BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A
[Candidatus Liberibacter asiaticus str. psy62]
         (753 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040030|gb|ACT56826.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 753

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 753/753 (100%), Positives = 753/753 (100%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA
Sbjct: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN
Sbjct: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT
Sbjct: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV
Sbjct: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED
Sbjct: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI
Sbjct: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR
Sbjct: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR
Sbjct: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL
Sbjct: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ
Sbjct: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH
Sbjct: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN
Sbjct: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS
Sbjct: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753


>gi|221632669|ref|YP_002521890.1| DNA gyrase subunit A [Thermomicrobium roseum DSM 5159]
 gi|221155840|gb|ACM04967.1| DNA gyrase, A subunit [Thermomicrobium roseum DSM 5159]
          Length = 836

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/771 (35%), Positives = 426/771 (55%), Gaps = 31/771 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +S         V+ +S+   ++  YL YA+S I +RA+PD+RDG KPV RRI++ 
Sbjct: 1   MDGGAMSEQQI---GRVRVISIEEEMKRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYG 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMGL   A ++KSA IVGEV+   HPHGD +VYD+LVR+ QPF  RYPLI GQGNFG+
Sbjct: 58  MYEMGLRPNAKYRKSAGIVGEVLKSYHPHGDSAVYDALVRMVQPFTMRYPLIDGQGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTEAR+  +AE +L  +D+  VDF   Y++   EP V P++ PNLL NG 
Sbjct: 118 VDGDSAAAMRYTEARLAPIAEELLADIDKQTVDFVPNYDDSTREPSVLPARLPNLLVNGA 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +A + LIDNPE ++E+L+E + GPDFPTGGII+  RE I+
Sbjct: 178 SGIAVGMATNIPPHNLGEVVDALVYLIDNPEATVEELVERLPGPDFPTGGIIL-GREGIL 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   VRAR  +EE GRG   I+VTE+PYQV K+ LIE+IAEL+ + R+  + D
Sbjct: 237 AAYATGRGRIVVRARAHIEETGRGRTSIIVTELPYQVNKAALIERIAELVKSGRLEGIHD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   ++    R   P  ++ ++F  + ++T F +NM  L  G +P+V+ L  +
Sbjct: 297 LRDESDRDGMRIVIELKRDAQPKTVLNNLFKHTQLQTTFGVNMLALVDGVLPRVLTLKRL 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVM 417
           L+ +L HR++V+ RR+ F ++  +RR  +L+GL IA  ++DE+   I   R+ +  +  +
Sbjct: 357 LQLYLEHRQQVIRRRTEFDLRQAERRAHVLEGLKIALDHLDEVISTIRNARSAEDARQQL 416

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++RF+LTE Q +AIL+++LR L  LE  +I+ E   LLA   ++ +LL    +    +  
Sbjct: 417 MARFNLTEIQANAILDMQLRRLAALERQKIEDEYRELLARIAELRALLADAAKILAVVRK 476

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+KE +        RRT   E   A      + ++ +  + V +++RG+++      
Sbjct: 477 ELLELKERYGDP-----RRTQIQE---ASSEISDEDLVPRVDVIVTLTSRGYVKRSTNGH 528

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE- 588
                     ++ +  ++ DS++  + A T D +L  +  G+ + LP   L     +   
Sbjct: 529 FRVQHRGGRGVNGMAVRDEDSIQHIVLASTHDSLLFFTNRGRVFQLPTYELPDVGRNARG 588

Query: 589 -AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I   ++L   +++ T      + +   L   + +G    V   E       G   + +
Sbjct: 589 LPIVNFLNLQPGEEVTTLLPVRDFSTATFLFFCTRQGRVKRVRLEEFSNVRASGLIAMSL 648

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            + +++  V   +G D V +V  + + + F  D +  M R   GV      +G       
Sbjct: 649 DAGDELAWVRPTSGSDEVILVTAHGQAIRFPEDDVRPMGRQAGGVIGVRLDEGDAVIAAE 708

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               EG   +  +   Y +  +        RGG G +  K  PR+G   ++
Sbjct: 709 VVRPEGDLLL-VSQYGYGKRTSLDEFRTQGRGGSGVIAMKVTPRTGHVAAA 758



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 6/170 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A+    GD L        +D ++L++  G+A   P  ++           + + L+ 
Sbjct: 642 GLIAMSLDAGDELAWVRPTSGSDEVILVTAHGQAIRFPEDDVRPMGRQA-GGVIGVRLDE 700

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV--SSEEKMKLVV 654
              ++ A V      LL+VS  G        E     R   G   +KV   +       V
Sbjct: 701 GDAVIAAEVVRPEGDLLLVSQYGYGKRTSLDEFRTQGRGGSGVIAMKVTPRTGHVAAATV 760

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
               D V +V    ++++  + QIP   R  +GV +   ++G     +  
Sbjct: 761 AREEDTVVLVSRRGRMILVPVAQIPRQGRHTQGVSVMRLQEGDEVASVAV 810


>gi|182627055|ref|ZP_02954780.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
 gi|177907581|gb|EDT70220.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
          Length = 839

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 406/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     + K     + A+  KE
Sbjct: 479 DERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  L   T   +L  +T GK Y + A  +       +      ++ L  ++ I T 
Sbjct: 539 DDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
             +        L + +  G        +     + G   L +   +++       GD  +
Sbjct: 599 LSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
             V ++   + F+   +  M R   GV+  S ++G ++  +   + E    +  +   Y 
Sbjct: 659 IFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDIAV-EDEKLLVVSENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RGG+G +  K   ++GK + +
Sbjct: 718 KRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 12/165 (7%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I+ ++ DG A      ++        +    I L      V   +     KLLVVS  G 
Sbjct: 658 IIFVTQDGNAIRFNETDVRPMGRTA-SGVKAISLREGDVAVCMDIAVEDEKLLVVSENGY 716

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                  E     R G   +     +K   +         D + ++      +  ++  I
Sbjct: 717 GKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVAIRINVSDI 776

Query: 679 PEMSR-GKGVRLQS-YKDGGISDVICFK-----ICEGLTWIDSAG 716
              SR   GV+L    +D  +  +           E +T +D + 
Sbjct: 777 SVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLDESE 821


>gi|168207730|ref|ZP_02633735.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
 gi|169343478|ref|ZP_02864478.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
 gi|169298430|gb|EDS80519.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
 gi|170660932|gb|EDT13615.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
          Length = 839

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 406/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKSKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     + K     + A+  KE
Sbjct: 479 DERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  L   T   +L  +T GK Y + A  +       +      ++ L  ++ I T 
Sbjct: 539 DDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
             +        L + +  G        +     + G   L +   +++       GD  +
Sbjct: 599 LSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
             V ++   + F+   +  M R   GV+  S ++G ++  +   + E    +  +   Y 
Sbjct: 659 IFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDIAV-EDEKLLVVSENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RGG+G +  K   ++GK + +
Sbjct: 718 KRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 12/165 (7%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I+ ++ DG A      ++        +    I L      V   +     KLLVVS  G 
Sbjct: 658 IIFVTQDGNAIRFNETDVRPMGRTA-SGVKAISLREGDVAVCMDIAVEDEKLLVVSENGY 716

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                  E     R G   +     +K   +         D + ++      +  ++  I
Sbjct: 717 GKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVAIRINVSDI 776

Query: 679 PEMSR-GKGVRLQS-YKDGGISDVICFK-----ICEGLTWIDSAG 716
              SR   GV+L    +D  +  +           E +T +D + 
Sbjct: 777 SVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLDESE 821


>gi|168218300|ref|ZP_02643925.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
 gi|182379686|gb|EDT77165.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
          Length = 839

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 406/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     + K     + A+  KE
Sbjct: 479 DERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  L   T   +L  +T GK Y + A  +       +      ++ L  ++ I T 
Sbjct: 539 DDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
             +        L + +  G        +     + G   L +   +++       GD  +
Sbjct: 599 LSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
             V ++   + F+   +  M R   GV+  S ++G ++  +   + E    +  +   Y 
Sbjct: 659 IFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDIAV-EDEKLLVVSENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RGG+G +  K   ++GK + +
Sbjct: 718 KRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 12/165 (7%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I+ ++ DG A      ++        +    I L      V   +     KLLVVS  G 
Sbjct: 658 IIFVTQDGNAIRFNETDVRPMGRTA-SGVKAISLREGDVAVCMDIAVEDEKLLVVSENGY 716

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                  E     R G   +     +K   +         D + ++      +  ++  I
Sbjct: 717 GKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVAIRINVSDI 776

Query: 679 PEMSR-GKGVRLQS-YKDGGISDVICFK-----ICEGLTWIDSAG 716
              SR   GV+L    +D  +  +           E +T +D + 
Sbjct: 777 SVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLDESE 821


>gi|168212010|ref|ZP_02637635.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
 gi|170710062|gb|EDT22244.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
          Length = 829

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/753 (33%), Positives = 406/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L     PQV+ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQVLNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     + K     + A+  KE
Sbjct: 479 DERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  L   T   +L  +T GK Y + A  +       +      ++ L  ++ I T 
Sbjct: 539 DDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
             +        L + +  G        +     + G   L +   +++       GD  +
Sbjct: 599 LSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
             V ++   + F+   +  M R   GV+  S ++G ++  +   + E    +  +   Y 
Sbjct: 659 IFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDIAV-EDEKLLVVSENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RGG+G +  K   ++GK + +
Sbjct: 718 KRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 7/154 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I+ ++ DG A      ++        +    I L      V   +     KLLVVS  G 
Sbjct: 658 IIFVTQDGNAIRFNETDVRPMGRTA-SGVKAISLREGDVAVCMDIAVEDEKLLVVSENGY 716

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                  E     R G   +     +K   +         D + ++      +  ++  I
Sbjct: 717 GKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVAIRINVSDI 776

Query: 679 PEMSR-GKGVRLQS-YKDGGISDVICFKICEGLT 710
              SR   GV+L    +D  +  +          
Sbjct: 777 SVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEE 810


>gi|110801534|ref|YP_697358.1| DNA gyrase subunit A [Clostridium perfringens SM101]
 gi|110682035|gb|ABG85405.1| DNA gyrase, A subunit [Clostridium perfringens SM101]
          Length = 839

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 406/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKSKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     + K     + A+  KE
Sbjct: 479 DERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  L   T   +L  +T GK Y + A  +       +      ++ L  ++ I T 
Sbjct: 539 DDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
             +        L + +  G        +     + G   L +   +++       GD  +
Sbjct: 599 LSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
             V ++   + F+   +  M R   GV+  S ++G ++  +   + E    +  +   Y 
Sbjct: 659 IFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDIAV-EDEKLLVVSENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RGG+G +  K   ++GK + +
Sbjct: 718 KRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 51/163 (31%), Gaps = 12/163 (7%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I+ ++ DG A      ++        +    I L      V   +     KLLVVS  G 
Sbjct: 658 IIFVTQDGNAIRFNETDVRPMGRTA-SGVKAISLREGDVAVCMDIAVEDEKLLVVSENGY 716

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                  E     R G   +     +K   +         D + ++      +  ++  I
Sbjct: 717 GKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVAIRINVSDI 776

Query: 679 PEMSR-GKGVRLQS-YKDGGISDVICFK-----ICEGLTWIDS 714
              SR   GV+L    +D  +  +           E +T +D 
Sbjct: 777 SVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLDE 819


>gi|18308989|ref|NP_560923.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
 gi|18143664|dbj|BAB79713.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
          Length = 763

 Score =  713 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 406/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     + K     + A+  KE
Sbjct: 479 DERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  L   T   +L  +T GK Y + A  +       +      ++ L  ++ I T 
Sbjct: 539 DDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
             +        L + +  G        +     + G   L +   +++       GD  +
Sbjct: 599 LSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
             V ++   + F+   +  M R   GV+  S ++G ++  +   + E    +  +   Y 
Sbjct: 659 IFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDIAV-EDEKLLVVSENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RGG+G +  K   ++GK + +
Sbjct: 718 KRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750


>gi|110800886|ref|YP_694482.1| DNA gyrase subunit A [Clostridium perfringens ATCC 13124]
 gi|168215273|ref|ZP_02640898.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
 gi|110675533|gb|ABG84520.1| DNA gyrase, A subunit [Clostridium perfringens ATCC 13124]
 gi|170713335|gb|EDT25517.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
          Length = 839

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/753 (32%), Positives = 406/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NID++I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDDVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     + K     + A+  KE
Sbjct: 479 DERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  L   T   +L  +T GK Y + A  +       +      ++ L  ++ I T 
Sbjct: 539 DDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
             +        L + +  G        +     + G   L +   +++       GD  +
Sbjct: 599 LSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
             V ++   + F+   +  M R   GV+  S ++G ++  +   + E    +  +   Y 
Sbjct: 659 IFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDIAV-EDEKLLVVSENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RGG+G +  K   ++GK + +
Sbjct: 718 KRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 12/165 (7%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I+ ++ DG A      ++        +    I L      V   +     KLLVVS  G 
Sbjct: 658 IIFVTQDGNAIRFNETDVRPMGRTA-SGVKAISLREGDVAVCMDIAVEDEKLLVVSENGY 716

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                  E     R G   +     +K   +         D + ++      +  ++  I
Sbjct: 717 GKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVAIRINVSDI 776

Query: 679 PEMSR-GKGVRLQS-YKDGGISDVICFK-----ICEGLTWIDSAG 716
              SR   GV+L    +D  +  +           E +T +D + 
Sbjct: 777 SVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLDESE 821


>gi|307610121|emb|CBW99663.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 130b]
          Length = 863

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/785 (33%), Positives = 400/785 (50%), Gaps = 47/785 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            + + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   
Sbjct: 3   YLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 123 TEVRMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A +AL+D P+ S+E L+E I GPDFPT   I+  R  I+E YR G+G   
Sbjct: 183 PPHNLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAA-IINGRAGIIEGYRTGKGRVV 241

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +   
Sbjct: 242 IRARTEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R+   D+++ ++F  + M+  F +NM  L     P+ + L  IL+ ++ HRRE
Sbjct: 302 RVVIELKRNEVADVVLNNLFAHTQMQNVFGINMVALVD-GQPRTLNLKQILEYFIKHRRE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                
Sbjct: 361 VVTRRTIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLV 420

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    + + L+E Q  AIL LRL  L  LE+ +I +E + 
Sbjct: 421 KAMLEKAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL   +++  +L S ++    I  E+ E+K  F          +                
Sbjct: 481 LLNLIKELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVV 540

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V        ++ +      SA H K+ D ++  + A T D +L  S  GK Y
Sbjct: 541 VTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLY 600

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L A  L        G  I  ++ L   ++I        Y     + + + KG    V  
Sbjct: 601 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +        G   + +  ++ +  V    G   + +  +  K++ F   ++  M R  +G
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 720

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    +       +      G T + +    Y +  +     +  RGG G +  +   R
Sbjct: 721 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 747 SGKFL 751
           +GK +
Sbjct: 781 NGKVV 785



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 77/248 (31%), Gaps = 15/248 (6%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
            ++  +   +     GR       ++  ++      + E +  + V          K   
Sbjct: 601 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S  + A+  +E DSL           I+L +  GK        +         
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 720

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----S 645
           ++ +             V  S   +L  +  G        E   + R G+  + +     
Sbjct: 721 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI--C 702
           + + ++ +     D   ++ +   L+ F ++++  + R  +GVRL +   G     +   
Sbjct: 781 NGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKI 840

Query: 703 FKICEGLT 710
             + E L 
Sbjct: 841 VDLGEELE 848


>gi|56418541|ref|YP_145859.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
 gi|261417506|ref|YP_003251188.1| DNA gyrase subunit A [Geobacillus sp. Y412MC61]
 gi|297528382|ref|YP_003669657.1| DNA gyrase subunit alpha [Geobacillus sp. C56-T3]
 gi|319765164|ref|YP_004130665.1| DNA gyrase subunit alpha [Geobacillus sp. Y412MC52]
 gi|56378383|dbj|BAD74291.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
 gi|261373963|gb|ACX76706.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC61]
 gi|297251634|gb|ADI25080.1| DNA gyrase, A subunit [Geobacillus sp. C56-T3]
 gi|317110030|gb|ADU92522.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC52]
          Length = 818

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/756 (33%), Positives = 416/756 (55%), Gaps = 29/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKS
Sbjct: 8   RIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEAR
Sbjct: 68  ARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAVGMAT+IP H 
Sbjct: 128 MSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQ 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A LAL  NPE+++  L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+
Sbjct: 188 LGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+   G   I+VTE+PYQV K++LIE+IAEL+  K+I  + D+RDES      ++  
Sbjct: 247 AEIEQQPNGKETIIVTELPYQVNKAKLIERIAELVRDKKIDGITDLRDESDRSGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++ +++  + ++T F +NM  L     P+V+ L   L+ +L H++ V+ RR
Sbjct: 307 VRRDANAKVVLNNLYKHTALQTSFGINMLALV-NGEPKVLNLKECLEHYLNHQKTVIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           ++F ++  + R  IL+GL IA  ++DE+I +IR        +  +++RFSL+E Q  AIL
Sbjct: 366 TAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMARFSLSERQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E  +L+    ++  +L   ++    I  E+ E+KE F+     
Sbjct: 426 DMRLQRLTGLEREKIEQEYQDLVRLIAELRGVLADEEKVLQIIRDELSEIKERFNDE--- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT       A +    + +I +E + + ++++G+I+          K     +  +H
Sbjct: 483 --RRTEIVS--GAVEQFDDEDLIPQEHVVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMH 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             E D ++  L   T D +L  +  GK Y      +       +   I  L++L+ ++ I
Sbjct: 539 TAEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDEWI 598

Query: 603 VTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    +     L+  + +G A     S        G   + +   +++  V    G
Sbjct: 599 NAMIPIESEFSDERYLVFATKQGIAKRSPLSAFAHIRNNGLIAIHLREGDELISVRLTDG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             H+ +  +N  L+ F    +  M R   GV+  +  DG     +   + +    +    
Sbjct: 659 KKHLIIGTKNGMLIRFPETDVRAMGRSATGVKAITLDDGDEVVGMEI-LEDHHDVLVVTK 717

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + + +        +  RGG G        ++G  ++
Sbjct: 718 KGFGKRTPASEYRVQSRGGKGLKTCNVTDKNGPVVA 753



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 14/215 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTD 561
               ++    E   V  + +G  +           +  L A+H +EGD L          
Sbjct: 601 MIPIESEFSDERYLVFATKQGIAKRSPLSAFAHIRNNGLIAIHLREGDELISVRLTDGKK 660

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +++ + +G     P  ++ +       +   I L+   ++V   + +    +LVV+ KG
Sbjct: 661 HLIIGTKNGMLIRFPETDVRAMGRSATGV-KAITLDDGDEVVGMEILEDHHDVLVVTKKG 719

Query: 622 NAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
                  SE    +R GK      +   +   + +   V  + V V+     L+  ++  
Sbjct: 720 FGKRTPASEYRVQSRGGKGLKTCNVTDKNGPVVAVTTVVGNEDVMVITTGGVLIRIAVSD 779

Query: 678 IPEMSR-GKGVRLQSY--KDGGISDVICFKICEGL 709
           I    R  +GV+L     +DG        K+ E  
Sbjct: 780 ISRTGRIAQGVKLIRLSGEDGHECVATVAKVPEEE 814


>gi|54297327|ref|YP_123696.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Paris]
 gi|53751112|emb|CAH12523.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Paris]
          Length = 863

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/785 (33%), Positives = 401/785 (51%), Gaps = 47/785 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            + + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   
Sbjct: 3   YLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 123 TEVRMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A +AL+D P+ S+E L+E I GPDFPT   I+  R  I+E YR G+G   
Sbjct: 183 PPHNLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAA-IINGRAGIIEGYRTGKGRVV 241

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E +   G   I++ E+PYQV K+RLIE+IAEL+  K++  +  +RDES +   
Sbjct: 242 IRARTEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKVEGISGLRDESDKQGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R+   D+++ ++F  + M+  F +NM  L     P+ + L  IL+ ++ HRRE
Sbjct: 302 RVVIELKRNEVADVVLNNLFAHTQMQNVFGINMVALVD-GQPRTLNLKQILEYFIKHRRE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                
Sbjct: 361 VVTRRTIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLV 420

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    + + L+E Q  AIL LRL  L  LE+ +I +E + 
Sbjct: 421 KAMLEKAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL   +++  +L S ++    I  E+ E+K  F          +                
Sbjct: 481 LLNLIKELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVV 540

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V        ++ +      SA H K+ D ++  + A T D +L  S  GK Y
Sbjct: 541 VTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLY 600

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L A  L        G  I  ++ L   ++I        Y     + + + KG    V  
Sbjct: 601 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +        G   + +  ++ +  V    G   + +  +  K++ F  +++  M R  +G
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGTRDIMLFTDAGKVIRFDENKVRPMGRTARG 720

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    +       +      G T + +    Y +  +     +  RGG G +  +   R
Sbjct: 721 VRGIRVEKDQAVKSLVVVDPNGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 747 SGKFL 751
           +GK +
Sbjct: 781 NGKVV 785



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 83/249 (33%), Gaps = 17/249 (6%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
            ++  +   +     GR       ++  ++      + E +  + V          K   
Sbjct: 601 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S  + A+  +E DSL        T  I+L +  GK        +         
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGTRDIMLFTDAGKVIRFDENKVRPMGRTARG 720

Query: 590 IQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---- 644
           ++  I +  +Q + +  V D     +L  +  G        E   + R G+  + +    
Sbjct: 721 VRG-IRVEKDQAVKSLVVVDPNGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTE 779

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI-- 701
            + + ++ +     D   ++ +   L+ F ++++  + R  +GVRL +   G     +  
Sbjct: 780 RNGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGETVVGMQK 839

Query: 702 CFKICEGLT 710
              + E L 
Sbjct: 840 IVDLGEELE 848


>gi|54294303|ref|YP_126718.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Lens]
 gi|53754135|emb|CAH15608.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Lens]
          Length = 863

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/785 (33%), Positives = 400/785 (50%), Gaps = 47/785 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            + + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   
Sbjct: 3   YLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 123 TEVRMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A +AL+D P+ S+E L+E I GPDFPT   I+  R  I+E YR G+G   
Sbjct: 183 PPHNLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAA-IINGRAGIIEGYRTGKGRVV 241

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +   
Sbjct: 242 IRARTEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R+   D+++ ++F  + M+  F +NM  L     P+ + L  IL+ ++ HRRE
Sbjct: 302 RVVIELKRNEVADVVLNNLFAHTQMQNVFGINMVALVD-GQPRTLNLKQILEYFIKHRRE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                
Sbjct: 361 VVTRRTIFELKKARNRAHLLEGLGIALANIDEMIALIKQSSTPQDAKSALLSKIWQPGLV 420

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    + + L+E Q  AIL LRL  L  LE+ +I +E + 
Sbjct: 421 KAMLEKAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL   +++  +L S ++    I  E+ E+K  F          +                
Sbjct: 481 LLNLIKELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVV 540

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V        ++ +      SA H K+ D ++  + A T D +L  S  GK Y
Sbjct: 541 VTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLY 600

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L A  L        G  I  ++ L   ++I        Y     + + + KG    V  
Sbjct: 601 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +        G   + +  ++ +  V    G   + +  +  K++ F   ++  M R  +G
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 720

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    +       +      G T + +    Y +  +     +  RGG G +  +   R
Sbjct: 721 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 747 SGKFL 751
           +GK +
Sbjct: 781 NGKVV 785



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 77/248 (31%), Gaps = 15/248 (6%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
            ++  +   +     GR       ++  ++      + E +  + V          K   
Sbjct: 601 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S  + A+  +E DSL           I+L +  GK        +         
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 720

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----S 645
           ++ +             V  S   +L  +  G        E   + R G+  + +     
Sbjct: 721 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI--C 702
           + + ++ +     D   ++ +   L+ F ++++  + R  +GVRL +   G     +   
Sbjct: 781 NGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKI 840

Query: 703 FKICEGLT 710
             + E L 
Sbjct: 841 VDLGEELE 848


>gi|319787325|ref|YP_004146800.1| DNA gyrase subunit alpha [Pseudoxanthomonas suwonensis 11-1]
 gi|317465837|gb|ADV27569.1| DNA gyrase, A subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 868

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/787 (33%), Positives = 389/787 (49%), Gaps = 47/787 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T + + +  V+L   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G     
Sbjct: 2   TDLAKEIIPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGAHSNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYYKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++   ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+
Sbjct: 122 YTEARMSRLTHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALID PE+ ++ L++YI GPDFPT G I+     I  +YR GRG  
Sbjct: 182 IPPHNLTEVVNGLLALIDEPELDVDALMQYIPGPDFPTAG-IINGVGGIQLAYRTGRGRV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R+RA+  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 241 RIRAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R    ++++ +++  + +E+ F +NM  L     PQ++ L  IL+ +L HRRE
Sbjct: 301 RIYIEVKRGESAEVVLNNLYQQTQLESVFGINMVALVD-GRPQLVNLKQILEAFLRHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-------- 422
           V+ RR+ F ++    R  +L+GL +A  NIDE+I +I+  D P+                
Sbjct: 360 VVTRRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSDNPQVAKERMLDRTWEPGLV 419

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        LTE Q   IL +RL  L  LE+ ++  E   
Sbjct: 420 GALLAATGAEASRPDDLPAGVGLVEGRYRLTEVQAQQILEMRLHRLTGLEQEKLTEEYRQ 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L   +     I  E+ E+K  F        R +          A     
Sbjct: 480 LLETIRALIEILEDPEVLLQVIRTELNELKAEFGDDRRSEIRASEEDLDILDLIAPEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                R+ K      SA   K+ D +      +T D +L  ++ GK +
Sbjct: 540 VTLSHAGYAKRQPVSAYRAQKRGGRGRSAAATKDEDFIDRLWLVNTHDTLLTFTSSGKVF 599

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            LP   L        G  I   I L   + +        Y     +   +  G       
Sbjct: 600 WLPVHQLPEAGSNARGRPIINWIPLEEGEQVQAVLPVREYAEGFFVFFATRNGTVKKTPL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E      +GK  + +   + +  V    G   V +   N K + F   ++  M R   G
Sbjct: 660 TEFAFRLARGKIAINLDDGDNLVGVALTDGGRDVMLFASNGKAVRFDESEVRAMGRTATG 719

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR     +G     +     EG   + ++ R Y +           RG  G +  +   R
Sbjct: 720 VRGIRLAEGEEVVSLVVPDGEGD-ILTASERGYGKRTPLSEYPKKGRGTQGVIAIQTSER 778

Query: 747 SGKFLSS 753
           +G+ + +
Sbjct: 779 NGRLVGA 785



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 59/144 (40%), Gaps = 6/144 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++L +++GKA       + +       ++  I L   +++V+  V D    +L  S +G 
Sbjct: 693 VMLFASNGKAVRFDESEVRAMGRTATGVRG-IRLAEGEEVVSLVVPDGEGDILTASERGY 751

Query: 623 AFIVEESEIIANTRK--GKTFLKVSS-EEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
                 SE     R   G   ++ S    ++   ++++  H V ++ +   L+     +I
Sbjct: 752 GKRTPLSEYPKKGRGTQGVIAIQTSERNGRLVGAIQLSEQHEVLLISDGGTLVRTRASEI 811

Query: 679 PEMSR-GKGVRLQSYKDGGISDVI 701
            ++ R  +GV L    +G     +
Sbjct: 812 SQVGRNTQGVTLIRLGEGESLQAV 835



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           S  G     P           + +  +     N  +V A       ++L++S  G     
Sbjct: 747 SERGYGKRTPLSEYPKKGRGTQGVIAIQTSERNGRLVGAIQLSEQHEVLLISDGGTLVRT 806

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
             SEI    R   G T +++   E ++ V +V 
Sbjct: 807 RASEISQVGRNTQGVTLIRLGEGESLQAVERVD 839


>gi|148358948|ref|YP_001250155.1| DNA gyrase subunit A [Legionella pneumophila str. Corby]
 gi|296106997|ref|YP_003618697.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280721|gb|ABQ54809.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Corby]
 gi|295648898|gb|ADG24745.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 863

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/785 (33%), Positives = 400/785 (50%), Gaps = 47/785 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            + + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   
Sbjct: 3   YLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 123 TEVRMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A +AL+D P+ S+E L+E I GPDFPT   I+  R  I+E YR G+G   
Sbjct: 183 PPHNLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAA-IINGRAGIIEGYRTGKGRVV 241

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +   
Sbjct: 242 IRARTEIETDENSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R+   D+++ ++F  + M+  F +NM  L     P+ + L  IL+ ++ HRRE
Sbjct: 302 RVVIELKRNEVADVVLNNLFAHTQMQNVFGINMVALVD-GQPRTLNLKQILEYFIKHRRE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                
Sbjct: 361 VVTRRTIFELKKARNRAHLLEGLGIALANIDEMIALIKQSPTPQDAKNALLSKIWQPGLV 420

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    + + L+E Q  AIL LRL  L  LE+ +I +E + 
Sbjct: 421 KAMLEKAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL   +++  +L S ++    I  E+ E+K  F          +                
Sbjct: 481 LLNLIKELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVV 540

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V        ++ +      SA H K+ D ++  + A T D +L  S  GK Y
Sbjct: 541 VTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLY 600

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L A  L        G  I  ++ L   ++I        Y     + + + KG    V  
Sbjct: 601 WLKAYQLPQASRTSRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +        G   + +  ++ +  V    G   + +  +  K++ F   ++  M R  +G
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 720

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    +       +      G T + +    Y +  +     +  RGG G +  +   R
Sbjct: 721 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 747 SGKFL 751
           +GK +
Sbjct: 781 NGKVV 785



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 75/237 (31%), Gaps = 13/237 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
            ++  +   +  T  GR       ++  ++      + E +  + V          K   
Sbjct: 601 WLKAYQLPQASRTSRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S  + A+  +E DSL           I+L +  GK        +         
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 720

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----S 645
           ++ +             V  S   +L  +  G        E   + R G+  + +     
Sbjct: 721 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           + + ++ +     D   ++ +   L+ F ++++  + R  +GVRL +   G     +
Sbjct: 781 NGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGETVVGM 837


>gi|312109157|ref|YP_003987473.1| DNA gyrase subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|311214258|gb|ADP72862.1| DNA gyrase, A subunit [Geobacillus sp. Y4.1MC1]
          Length = 824

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/766 (32%), Positives = 418/766 (54%), Gaps = 32/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +       ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G
Sbjct: 1   MSENQHP---RIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+
Sbjct: 58  MTADKPYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAV
Sbjct: 118 AAAMRYTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +A LAL  NP++++  L+E+I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQII-GRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+V E+PYQV K++LIE+IAEL+  K+I  + D+RDES
Sbjct: 237 GRGSITLRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +  +++ +++  + M+T F +NM  L     P+V+ L   L+ +L
Sbjct: 297 DRSGMRIVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVD-GQPKVLNLKECLQHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA   +DE+I +IR+       +  ++ +FS
Sbjct: 356 DHQKTVIRRRTAYELKKAEARAHILEGLRIALDYLDEVINLIRSSKTTEIAREGLMQQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+
Sbjct: 416 LSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKAILADEEKVLQIIRDELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +I +E I + ++++G+I+          K
Sbjct: 476 KERFNDE-----RRTEIV--AGGAEEFEDEDLIPRENIVITLTHKGYIKRLPVSTYKSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +H  E D ++  L   T D +L  +  GK Y      +       +   +  
Sbjct: 529 RGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPEFGRTAKGIPLIN 588

Query: 593 LIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L++L+ ++ I T       +D    L   + +G A     S        G   + +   +
Sbjct: 589 LLELDKDEWINTIIPIDNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGD 648

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++       G  H+ V  +N  L+ F    +  M R   GV+  + +DG     +   + 
Sbjct: 649 ELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAMGRSATGVKAITLEDGDEVVGMEI-LE 707

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +      Y +        +  RGG G        ++G  ++
Sbjct: 708 DGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVA 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 6/167 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+H +EGD L  A     +  I++ + +G     P  ++ +       +   
Sbjct: 633 HIRNNGLIAIHLREGDELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAMGRSATGV-KA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L    ++V   + +  C +LVV+  G       SE    +R GK      +   +   
Sbjct: 692 ITLEDGDEVVGMEILEDGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPI 751

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           + +      + + ++  +  L+  ++  I  M R  +GV+L    D 
Sbjct: 752 VAVKTVTGEEDLMLITASGILIRIAVSDISRMGRNTQGVKLIRLSDD 798


>gi|295402118|ref|ZP_06812077.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975801|gb|EFG51420.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93]
          Length = 824

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/766 (32%), Positives = 419/766 (54%), Gaps = 32/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +       ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G
Sbjct: 1   MSENQHP---RIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+
Sbjct: 58  MTADKPYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAV
Sbjct: 118 AAAMRYTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +A LAL  NP++++  L+E+I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQII-GRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+V E+PYQV K++LIE+IAEL+  K+I  + D+RDES
Sbjct: 237 GRGSITLRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +  +++ +++  + M+T F +NM  L     P+V+ L   L+ +L
Sbjct: 297 DRSGMRIVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVD-GQPKVLNLKECLQHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       +  ++ +FS
Sbjct: 356 DHQKTVIRRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSKTTEIAREGLMQQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+
Sbjct: 416 LSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKAILADEEKVLQIIRDELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +I +E I + ++++G+I+          K
Sbjct: 476 KERFNDE-----RRTEIV--AGGAEEFEDEDLIPRENIVITLTHKGYIKRLPVSTYKSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +H  E D ++  L   T D +L  +  GK Y      +       +   +  
Sbjct: 529 RGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPEFGRTAKGIPLIN 588

Query: 593 LIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L++L+ ++ I T       +D    L   + +G A     S        G   + +   +
Sbjct: 589 LLELDKDEWINTIIPIDNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGD 648

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++       G  H+ V  +N  L+ F    +  M R   GV+  + +DG     +   + 
Sbjct: 649 ELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAMGRSATGVKAITLEDGDEVVGMEI-LE 707

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +      Y +        +  RGG G        ++G  ++
Sbjct: 708 DGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVA 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 6/167 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+H +EGD L  A     +  I++ + +G     P  ++ +       +   
Sbjct: 633 HIRNNGLIAIHLREGDELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAMGRSATGV-KA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L    ++V   + +  C +LVV+  G       SE    +R GK      +   +   
Sbjct: 692 ITLEDGDEVVGMEILEDGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPI 751

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           + +      + + ++  +  L+  ++  I  M R  +GV+L    D 
Sbjct: 752 VAVKTVTGEEDLMLITASGILIRIAVSDISRMGRNTQGVKLIRLSDD 798


>gi|138893685|ref|YP_001124138.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
 gi|134265198|gb|ABO65393.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
          Length = 822

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/755 (33%), Positives = 416/755 (55%), Gaps = 28/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKS
Sbjct: 8   RIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEAR
Sbjct: 68  ARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAVGMAT+IP H 
Sbjct: 128 MSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQ 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A LAL  NPE+++  L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+
Sbjct: 188 LGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+   G   I+V+E+PYQV K++LIE+IAEL+  ++I  + D+RDES  +   ++  
Sbjct: 247 AEIEQHANGKETIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++ +++  + ++T F +NM  L     P+V+ L   L+ +L H++ V+ RR
Sbjct: 307 VRRDANAKVVLNNLYKYTALQTSFGINMLALV-NGEPKVLNLKECLEHYLNHQKTVIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           ++F ++  + R  IL+GL IA  ++DE+I +IR        +  ++ RFSL+E Q  AIL
Sbjct: 366 TAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMERFSLSERQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E  +++    ++ ++L   ++    I  E+ E+KE F+     
Sbjct: 426 DMRLQRLTGLEREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFNDE--- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT       A +    + +I  E I + ++++G+I+          K     +  +H
Sbjct: 483 --RRTEIV--VGAVEQLDDEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMH 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             E D ++  L   T D +L  +  GK Y      +       +   I  L++L+ ++ I
Sbjct: 539 TSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDEWI 598

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   +D    L+  + +G A     S        G   + +   +++  V    G 
Sbjct: 599 NAMIPIETFDDERYLVFSTKQGIAKRSSLSSFAHIRNNGLIAIHLREGDELISVRLTDGQ 658

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            H+ +  +N  L+ F    +  M R   GV+  +  D      +   + +    +    +
Sbjct: 659 KHLIIGTKNGMLIRFPETDVRTMGRSATGVKAITLDDNDEVVSMEI-LEDHHDVLVVTKK 717

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +        +  RGG G        R+G  ++
Sbjct: 718 GFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVA 752



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+H +EGD L           +++ + +G     P  ++ +       +   
Sbjct: 632 HIRNNGLIAIHLREGDELISVRLTDGQKHLIIGTKNGMLIRFPETDVRTMGRSATGV-KA 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L+ N ++V+  + +    +LVV+ KG       SE    +R GK      +   +   
Sbjct: 691 ITLDDNDEVVSMEILEDHHDVLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSV 750

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           + +   V  + + V+  +  L+  S+  I    R  +GV+L         + + 
Sbjct: 751 VAVTTVVGNEDLMVITTSGVLIRISVSDISRTGRVAQGVKLIRLSGEDEHECVA 804


>gi|196249899|ref|ZP_03148595.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
 gi|196210775|gb|EDY05538.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
          Length = 822

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/755 (33%), Positives = 416/755 (55%), Gaps = 28/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKS
Sbjct: 8   RIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEAR
Sbjct: 68  ARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAVGMAT+IP H 
Sbjct: 128 MSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQ 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A LAL  NPE+++  L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+
Sbjct: 188 LGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+   G   I+V+E+PYQV K++LIE+IAEL+  ++I  + D+RDES  +   ++  
Sbjct: 247 AEIEQHANGKATIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++ +++  + ++T F +NM  L     P+V+ L   L+ +L H++ V+ RR
Sbjct: 307 VRRDANAKVVLNNLYKYTALQTSFGINMLALV-NGEPKVLNLKECLEHYLNHQKTVIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           ++F ++  + R  IL+GL IA  ++DE+I +IR        +  ++ RFSL+E Q  AIL
Sbjct: 366 TAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMERFSLSERQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E  +++    ++ ++L   ++    I  E+ E+KE F+     
Sbjct: 426 DMRLQRLTGLEREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFNDE--- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT       A +    + +I  E I + ++++G+I+          K     +  +H
Sbjct: 483 --RRTEIV--VGAVEQLDDEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMH 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             E D ++  L   T D +L  +  GK Y      +       +   I  L++L+ ++ I
Sbjct: 539 TSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDEWI 598

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   +D    L+  + +G A     S        G   + +   +++  V    G 
Sbjct: 599 NAMIPIETFDDERYLVFSTKQGIAKRSSLSSFAHIRNNGLIAIHLREGDELISVRLTDGQ 658

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            H+ +  +N  L+ F    +  M R   GV+  +  D      +   + +    +    +
Sbjct: 659 KHLIIGTKNGMLIRFPETDVRTMGRSATGVKAITLDDNDEVVSMEI-LEDHHDVLVVTKK 717

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +        +  RGG G        R+G  ++
Sbjct: 718 GFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVA 752



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+H +EGD L           +++ + +G     P  ++ +       +   
Sbjct: 632 HIRNNGLIAIHLREGDELISVRLTDGQKHLIIGTKNGMLIRFPETDVRTMGRSATGV-KA 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L+ N ++V+  + +    +LVV+ KG       SE    +R GK      +   +   
Sbjct: 691 ITLDDNDEVVSMEILEDHHDVLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSV 750

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           + +   V  + + V+  +  L+  S+  I    R  +GV+L         + + 
Sbjct: 751 VAVTTVVGNEDLMVITTSGVLIRISVSDISRTGRVAQGVKLIRLSGEDEHECVA 804


>gi|52841647|ref|YP_095446.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52628758|gb|AAU27499.1| DNA gyrase, A subunit [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 871

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/785 (33%), Positives = 399/785 (50%), Gaps = 47/785 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            + + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   
Sbjct: 11  YLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELSNDWNKP 70

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RY
Sbjct: 71  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRY 130

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 131 TEVRMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNI 190

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A +AL+D P+ S+E L+E I GPDFPT   I+  R  I+E YR G+G   
Sbjct: 191 PPHNLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAA-IINGRAGIIEGYRTGKGRVV 249

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +   
Sbjct: 250 IRARTEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGM 309

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R+   D+++ ++F  + M+  F +NM  L     P+ + L  IL+ ++ HRRE
Sbjct: 310 RVVIELKRNEVADVVLNNLFAHTQMQNVFGINMVALVD-GQPRTLNLKQILEYFIKHRRE 368

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                
Sbjct: 369 VVTRRTIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLV 428

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    S + L+E Q  AIL LRL  L  LE+ +I +E + 
Sbjct: 429 KAMLEKAGSNASRPDDLTEEYGLHESGYKLSEAQAQAILELRLHRLTALEQDKIINEFEE 488

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL   +++  +L S ++    I  E+ E+K  F          +                
Sbjct: 489 LLNLIKELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVV 548

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V        ++ +      SA H K+ D ++  + A T D +L  S  GK Y
Sbjct: 549 VTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLY 608

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L A  L        G  I  ++ L   ++I        Y     + + + KG    V  
Sbjct: 609 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 668

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +        G   + +  ++ +  V    G   + +  +  K++ F   ++  M R  +G
Sbjct: 669 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 728

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    +       +      G T + +    Y +  +     +  RGG G +  +   R
Sbjct: 729 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 788

Query: 747 SGKFL 751
           +GK +
Sbjct: 789 NGKVV 793



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 77/248 (31%), Gaps = 15/248 (6%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
            ++  +   +     GR       ++  ++      + E +  + V          K   
Sbjct: 609 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 668

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S  + A+  +E DSL           I+L +  GK        +         
Sbjct: 669 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 728

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----S 645
           ++ +             V  S   +L  +  G        E   + R G+  + +     
Sbjct: 729 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 788

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI--C 702
           + + ++ +     D   ++ +   L+ F ++++  + R  +GVRL +   G     +   
Sbjct: 789 NGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKI 848

Query: 703 FKICEGLT 710
             + E L 
Sbjct: 849 VDLGEELE 856


>gi|296131559|ref|YP_003638806.1| DNA gyrase, A subunit [Thermincola sp. JR]
 gi|296030137|gb|ADG80905.1| DNA gyrase, A subunit [Thermincola potens JR]
          Length = 814

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/757 (33%), Positives = 402/757 (53%), Gaps = 13/757 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N        +  +++   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AMSE+G
Sbjct: 1   MKNLTEFEHGKILPININDEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSAR+VGEV+GK HPHGD +VYD++VR+AQ F  RYPL+ G GNFG+IDGDS
Sbjct: 61  MTPDKPHKKSARLVGEVLGKYHPHGDTAVYDAMVRMAQDFACRYPLVDGHGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM ++ + +L  +D+D VDF   +++   EPVV P++ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMAKITQEMLADIDKDTVDFVPNFDDTLKEPVVLPARIPNLLINGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ EI +  + LIDNP+ + ++L+  + GPDFPTGG I+  RE I  +Y+ 
Sbjct: 181 GMATNIPPHNLGEIIDGVIMLIDNPDATPQELMMAVKGPDFPTGG-IIMGREGIKSAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  R+RA+  +E +  G   I+V E+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 240 GRGAIRIRAKTTIETMSNGKSRILVHELPYQVNKARLIEKIAELVRDKKIDGITDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +P +++  +F  + ++  F + M  L     P+V+ L   L  +L
Sbjct: 300 DRMGMQIVIELRKDANPQVVLNQLFKHTQLQETFGVIMLALVD-GQPKVLNLRDALFYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+++V+ RR+ F +   + R  IL+GL IA  ++DE+I  IR        +  ++ +F 
Sbjct: 359 EHQKDVITRRTRFELDKAEARAHILEGLKIALDHLDEVIKTIRESRTVEIARNALMDKFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +++ E  NLL     + ++L +       I  E+  +
Sbjct: 419 LSEKQAQAILDMRLQKLTGLEREKLEEEYKNLLERIAYLKAVLANEHMVLGIIKEELLVI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE ++               +    A     +       +        R+ K     ++A
Sbjct: 479 KEKYNDPRRTEISINDVNIDTEDLIAEEDMVITITHLGYIKRIALDTYRNQKRGGRGVTA 538

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           +  KE D ++      T   +L  +  GK Y L   N+       +  AI  L+ ++ ++
Sbjct: 539 MGTKEEDFVEHLFITTTHHYLLFFTNKGKVYKLKVHNIPEAGRQAKGTAIVNLLYISGDE 598

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +D+   LL ++ KG        E  +  + G   L +   +++  V    
Sbjct: 599 KITAVIPVRSFDTEEYLLTITRKGVIKKTPLVEYGSTRKDGIIALSLDENDELIDVKLTN 658

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G + V +  +  K + F+ +++  M R  +GVR  S  +     +    I +G   +   
Sbjct: 659 GKNEVIIGTKEGKAIRFAEEEVRSMGRAARGVRGISLSEKDEV-IGIDTIEQGADVLVVT 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + +  +        RGG G +  +   R+G  + 
Sbjct: 718 EKGFGKRSHVDDYRRQGRGGKGIMTIRPTKRNGHLVG 754



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKM 650
           I L+   +++     +    +LVV+ KG        +     R GK  + +        +
Sbjct: 693 ISLSEKDEVIGIDTIEQGADVLVVTEKGFGKRSHVDDYRRQGRGGKGIMTIRPTKRNGHL 752

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
             +  V  GD + ++     ++   +D I  M R  +GVRL    +  
Sbjct: 753 VGIKVVKPGDELMLITAEGIIIRLDVDGISTMGRSTQGVRLMRLDEND 800


>gi|258510026|ref|YP_003183460.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476752|gb|ACV57071.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 820

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/766 (33%), Positives = 409/766 (53%), Gaps = 37/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ ++     +  V +   L   +L YA+S I  RAIPD+RDG KPVHRRI++AM E G
Sbjct: 1   MADESS--SRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKS+RIVG+V+GK HPHGD +VY++LVRLAQ F  RYPLI G GNFG+IDGD+
Sbjct: 59  MTPDKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDA 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+RM+ +A  +L+ ++++ VDF   Y+E++ EPVV PS+FPNLL NG+SGIAV
Sbjct: 119 AAAMRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+ +  + LID+P+ +++ L+  I GPDFPTGG+I+  RE I ++Y  
Sbjct: 179 GMATNIPPHNLREVIDGVVMLIDHPDATLDDLMTVIKGPDFPTGGVIL-GREGIRKAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA    EE+  G   IVVTEIPYQ  K+R++EKIAEL   K+I  + D+RDES
Sbjct: 238 GRGSITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    R + P +++ ++F  + ++T F +    L     P+V+ L   L+ +L
Sbjct: 298 DRRGMRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALV-NGEPKVLTLRETLEHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            H+R+V+ RR+ + +   + R  IL+GL IA  ++DE+I++IR+            S F 
Sbjct: 357 NHQRDVVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLISTFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I++E   L     ++ ++L   K     I  EI E+
Sbjct: 417 LSEEQAQAILDMRLQRLTGLEREKIEAEYQELQQRIAELKAILADPKLLDGVIRQEILEI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F        RRT       A+    ++ +I    + + I++RG+I+          +
Sbjct: 477 KERFGDE-----RRTRIV---NAEGEISEEDLIPVHDVVIAITHRGYIKRLPLSTYHSQR 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
                ++ ++  E D +       T D +L  +  G+ Y + A ++     +  G  I  
Sbjct: 529 RGGRGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVPEFGRQARGTPIVN 588

Query: 593 LIDLNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           L+++   + +       S          L   + +G       +E     + G   + + 
Sbjct: 589 LLNIEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYSNVRKNGLIAINLR 648

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
            ++ +  V    G   + +V  N   + F    +  M R   GV+  S  +G   +VI  
Sbjct: 649 DDDDLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPMGRAATGVKGISLSEGD--EVIAM 706

Query: 704 KICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            + E     +    R Y +           RGG G       P++G
Sbjct: 707 DVAEDDHDVLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKNG 752



 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 63/153 (41%), Gaps = 6/153 (3%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I++++ +G A   P  ++         +   I L+   +++   V +    +LVV+S+G 
Sbjct: 665 IMMVTRNGLAIRFPETDVRPMGRAATGV-KGISLSEGDEVIAMDVAEDDHDVLVVTSRGY 723

Query: 623 AFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 SE  A +R GK    +     +   +++ +    D V +V +    +   +  +
Sbjct: 724 GKRTPVSEYRAQSRGGKGIKTLNCTPKNGHAIEMCMVTEDDDVMIVTQAGVAIRIHVRDV 783

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
             +SR  +GVRL +  +G     +   + +   
Sbjct: 784 STLSRNTQGVRLINVDEGVEVASVSRVVKDDDE 816


>gi|218291099|ref|ZP_03495122.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
 gi|218238984|gb|EED06191.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
          Length = 820

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/766 (34%), Positives = 411/766 (53%), Gaps = 37/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ ++     +  V +   L   +L YA+S I  RAIPD+RDG KPVHRRI++AM E G
Sbjct: 1   MADESS--SRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKS+RIVG+V+GK HPHGD +VY++LVRLAQ F  RYPLI G GNFG+IDGD+
Sbjct: 59  MTPDKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDA 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+RM+ +A  +L+ ++++ VDF   Y+E++ EPVV PS+FPNLL NG+SGIAV
Sbjct: 119 AAAMRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+ +  + LIDNP+ +++ L+  I GPDFPTGG+I+  RE I ++Y  
Sbjct: 179 GMATNIPPHNLREVIDGVVMLIDNPDATLDDLMTVIKGPDFPTGGVIL-GREGIRKAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA    EE+  G   IVVTEIPYQ  K+R++EKIAEL   K+I  + D+RDES
Sbjct: 238 GRGSITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    R + P +++ ++F  + ++T F +    L     P+V+ L   L+ +L
Sbjct: 298 DRRGMRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALV-NGEPKVLTLRETLEHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            H+R+V+ RR+ + +   + R  IL+GL IA  ++DE+I++IR+            S F 
Sbjct: 357 NHQRDVVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLISTFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I++E   L+    ++ ++L   K   + I  EI E+
Sbjct: 417 LSEEQAQAILDMRLQRLTGLEREKIEAEYQELIQRIAELKAILADPKLLDSVIRQEILEI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F        RRT       A+    ++ +I    + + I++RG+I+          +
Sbjct: 477 KERFGD-----DRRTRIV---NAEGEISEEDLIPVHDVVIAITHRGYIKRLPLSTYHSQR 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
                ++ ++  E D +       T D +L  +  G+ Y + A ++     +  G  I  
Sbjct: 529 RGGRGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVPEFGRQARGTPIVN 588

Query: 593 LIDLNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           L+++   + +       S          L   + +G       +E     + G   + + 
Sbjct: 589 LLNIEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYSNVRKNGLIAINLR 648

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
            ++ +  V    G   + +V  N   + F    +  M R   GV+  S  +G   +VI  
Sbjct: 649 DDDDLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPMGRAATGVKGISLSEGD--EVIAM 706

Query: 704 KICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            + E     +    R Y +           RGG G       P++G
Sbjct: 707 DVAEDDHDVLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKNG 752



 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 63/153 (41%), Gaps = 6/153 (3%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I++++ +G A   P  ++         +   I L+   +++   V +    +LVV+S+G 
Sbjct: 665 IMMVTRNGLAIRFPETDVRPMGRAATGV-KGISLSEGDEVIAMDVAEDDHDVLVVTSRGY 723

Query: 623 AFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 SE  A +R GK    +     +   +++ +    D + +V +    +   +  +
Sbjct: 724 GKRTPVSEYRAQSRGGKGIKTLNCTPKNGHAIEMCMVTPEDDIMIVTQAGVAIRIHVRDV 783

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
             +SR  +GVRL +  +G     +   + +   
Sbjct: 784 STLSRNTQGVRLINVDEGVEVASVSRVVKDDDE 816


>gi|78045002|ref|YP_361486.1| DNA gyrase subunit A [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997117|gb|ABB16016.1| DNA gyrase, A subunit [Carboxydothermus hydrogenoformans Z-2901]
          Length = 812

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/747 (33%), Positives = 395/747 (52%), Gaps = 13/747 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM  +G+      +KS
Sbjct: 6   KVLPVKLEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHILGMTPDKPHRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVGEV+GK HPHGD +VYD++VR+AQ F  RYPLI G GNFG++DGDSAAA RYTEAR
Sbjct: 66  AHIVGEVLGKFHPHGDVAVYDAMVRMAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D++ VDF   Y+    EPVV PS+ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 126 MAKITVEMLRDIDKETVDFMPNYDNSTKEPVVLPSRIPNLLVNGSSGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+ +  + +ID+PE+ I +L++ I GPDFPTGG I   R+ I ++Y  GRG  +VRA 
Sbjct: 186 LREVIDGVVKMIDDPEVEIGELMKIIKGPDFPTGGKI-MGRQGIRQAYTTGRGTIKVRAV 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              E++  G   I+VTE+PYQV K++LIEKIAEL+  K+I  + D+RDES      ++  
Sbjct: 245 TTFEKLSGGKTAIIVTELPYQVNKAKLIEKIAELVRDKKIDGIADLRDESDRKGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P +++  +F  + ++  F + M  L     P+++ L  IL  +L H+++V+ RR
Sbjct: 305 LKRDANPQVVLNQLFKHTQLQDTFGIIMLALVD-NQPRILNLKEILFYYLEHQKDVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           + + +   + R  IL+GL IA  N+DE+I IIR        +  ++SRF LTE Q  AIL
Sbjct: 364 TRYDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLMSRFGLTEKQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I  E   L+ + E  +S+L   +     I  E+ E+KE +  +   
Sbjct: 424 DMRLQRLTALEREKIDEEYRELIKKIEYFNSILADERVLLGVIRQELLEIKEKYGDARRT 483

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                          A     +       +        ++ +     ++A+  KE D ++
Sbjct: 484 QITNEESIFDEEDLIAEEDMVITITHQGYIKRLPVDTYKNQRRGGRGVTAMATKEEDFVR 543

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV--- 607
                 T + +L  +  GK Y L    +       +   I  L+ ++ ++ I        
Sbjct: 544 HLFVTSTHNYLLFFTNKGKVYRLKVHEIPEAGRQAKGTPIVNLLYVDQDERITAIIPVKE 603

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     L +V+  G       SE  ++ R G   L +   +K+  V   TG + V +  +
Sbjct: 604 FTDDHYLFMVTKNGIVKKTVLSEYDSSRRDGIIALSLEEGDKLIDVKLSTGQEEVIIGTK 663

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
               + FS   +  M R  +GV+  +   G    +    + E    +    + + +    
Sbjct: 664 KGMAIRFSETDVRPMGRTARGVKGITLSPGDEV-IGLEVVDEQAELLTVTSKGFGKKTPF 722

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  RGG G +  K   ++G+ + 
Sbjct: 723 SEYRVQGRGGKGIINMKVTQKNGEVVG 749



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEK 649
           I L+   +++   V D   +LL V+SKG       SE     R GK  + +     + E 
Sbjct: 688 ITLSPGDEVIGLEVVDEQAELLTVTSKGFGKKTPFSEYRVQGRGGKGIINMKVTQKNGEV 747

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY-KDGGISDVICFKICE 707
           + +V     D V  +     ++     +I    R  +GV L    KD  ++ V      E
Sbjct: 748 VGIVAVRPEDEVMAISGEGIMIRVKAAEISTQGRATQGVTLMKLNKDDQLTAVAKIAAQE 807

Query: 708 GLT 710
              
Sbjct: 808 DEE 810



 Score = 47.1 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 10/182 (5%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
             D  RR              +   +   +   ++ + +G         V         +
Sbjct: 626 EYDSSRRDGIIALSLEEGDKLIDVKLSTGQEEVIIGTKKGMAIRFSETDVRPMGRTARGV 685

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
             +    GD +           +L +++ G     P          G+ I  +     N 
Sbjct: 686 KGITLSPGDEVIGLEVVDEQAELLTVTSKGFGKKTPFSEYRVQGRGGKGIINMKVTQKNG 745

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
           ++V         +++ +S +G    V+ +EI    R   G T +K++ ++++  V K+  
Sbjct: 746 EVVGIVAVRPEDEVMAISGEGIMIRVKAAEISTQGRATQGVTLMKLNKDDQLTAVAKIAA 805

Query: 659 DH 660
             
Sbjct: 806 QE 807


>gi|331270700|ref|YP_004397192.1| DNA gyrase subunit A [Clostridium botulinum BKT015925]
 gi|329127250|gb|AEB77195.1| DNA gyrase, A subunit [Clostridium botulinum BKT015925]
          Length = 849

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/759 (32%), Positives = 407/759 (53%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            + N+  + +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     +
Sbjct: 3   NQGNIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+V+GK HPHGD +VYD+LVR+AQ F  RY L+ G GNFG++DGD AAA RYT
Sbjct: 63  RKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP
Sbjct: 123 EAKMTKVTLELLRDINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+       IDNP+IS+ +L+  I GPDFPT GIIV  +  I ++Y  GRG   +
Sbjct: 183 PHNLTEVINGINKYIDNPDISVAELMTEIKGPDFPTAGIIV-GKSGIRKAYETGRGKVIL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +EE   G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES  +   +
Sbjct: 242 RSKAEIEEEK-GRSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRI 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++  ++  + M+  F + M  L     P+V+ L  +LK ++  + EV+
Sbjct: 301 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALV-NGEPKVLSLKEVLKHYIKFQEEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F +     R  IL+GL IA  +IDE+I +IR      + +  ++SRF L+E Q  
Sbjct: 360 TRRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRGSKTTGEAREGLMSRFGLSEKQAT 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L+ L  LE  +I+ E   L+   +    +L+        I  E+ E+K  +   
Sbjct: 420 AILDMKLQRLTGLEREKIEEEYAKLMENIKYFRQILSDKSLLLKIIKDELNEIKVKYGDE 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RR+   +          + +IE++ + + +++ G+I+          K     + 
Sbjct: 480 -----RRSEIIQ--GEGNDIDIEDLIEEKDVVITLTHAGYIKRLPVETYSAQKRGGRGIQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHN 599
           A+  KE D ++  + A T D IL  +  G+ Y L A  +       + +    LI L+  
Sbjct: 533 AMTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEAGRTAKGMNLINLIPLDKE 592

Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I        +     L++ + KG        +  +  + G   + +  ++++      
Sbjct: 593 EKIQNVIYLKEFKKDKFLIMGTKKGLIKKTSLDKYASIRKNGLNAINLREDDELVSARVT 652

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           TGD ++    +N   + F  + +  M R   GV+  + ++      +     E   ++  
Sbjct: 653 TGDCNIIYATKNGYAIRFHENDVRPMGRTATGVKAITLREDDEVVSMEVA-SENRDFLVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   Y +        L KRGG G +  K   ++G  + +
Sbjct: 712 SENGYGKRTPIDQYTLQKRGGKGVITYKISEKTGLLIGA 750


>gi|253681297|ref|ZP_04862095.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
 gi|253562535|gb|EES91986.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
          Length = 842

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/759 (33%), Positives = 408/759 (53%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            + N+  + +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     +
Sbjct: 3   NQGNIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+V+GK HPHGD +VYD+LVR+AQ F  RY L+ G GNFG++DGD AAA RYT
Sbjct: 63  RKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP
Sbjct: 123 EAKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+       IDNPEIS+ +L+  I GPDFPT GIIV  +  I ++Y  GRG   +
Sbjct: 183 PHNLTEVINGINKFIDNPEISVAELMTEIKGPDFPTSGIIV-GKSGIRKAYETGRGKVIL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R  +EE   G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES  +   +
Sbjct: 242 RSRAEIEEDK-GKSRIVVTEIPYQVNKARLIENIANLVKDKRINGISDLRDESDREGMRI 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++  ++  + M+  F + M  L     P+V+ L  +L+ ++  + EV+
Sbjct: 301 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALV-NGEPKVLSLKEVLRHYIKFQEEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F +     R  IL+GL IA  +IDE+I +IR      + K  ++S+F L+E Q  
Sbjct: 360 TRRTQFDLDKALARAHILEGLRIALDHIDEVIRLIRGSKTTGEAKEGLMSKFGLSEKQAT 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L+ L  LE  +I+ E   L+   +    +L+        I  E+ E+K  +   
Sbjct: 420 AILDMKLQRLTGLEREKIEEEYAKLMENVKYFRQILSDKSLLLKIIKDELNEIKTKYGDE 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                R++   +          + +IE++ + + +++ G+I+          K     + 
Sbjct: 480 -----RKSEIIQ--DEGNDIDIEDLIEEKDVVITLTHAGYIKRLPVETYSAQKRGGRGIQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHN 599
           A+  KE D ++  + A T D IL  +  G+ Y L A  +       + +    LI L+  
Sbjct: 533 AMTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEAGRTAKGMNLINLIPLDKE 592

Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I        +     L++ + KG        +  +  + G   + +  ++++  V   
Sbjct: 593 EKIQNVIYLKEFKEDTFLIMGTKKGLIKKTSLDKYASIRKNGLNAINLREDDELISVRVT 652

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           TGD +V    +N   + F  + +  M R   GV+  + ++      +     E    +  
Sbjct: 653 TGDCNVIYATKNGYAIRFDENDVRPMGRTATGVKAITLREDDEVVSMEVA-SENRDLLVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   Y +  +     L +RGG G +  K   ++G  + +
Sbjct: 712 SENGYGKRTHIDQYTLQRRGGKGVITYKISEKTGLLIGA 750



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 7/175 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L+A++ +E D L           ++  + +G A      ++         +   I L  
Sbjct: 634 GLNAINLREDDELISVRVTTGDCNVIYATKNGYAIRFDENDVRPMGRTATGV-KAITLRE 692

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVK 655
           + ++V+  V      LLVVS  G        +     R GK  +     EK   +     
Sbjct: 693 DDEVVSMEVASENRDLLVVSENGYGKRTHIDQYTLQRRGGKGVITYKISEKTGLLIGARF 752

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICE 707
           V   D + ++ ++   +  ++  I   SR   GV L     +  +  +    I E
Sbjct: 753 VEDKDELMLINDSGIAIRINVSDISTTSRNAMGVTLMRTVNNEKVVTMAKVNISE 807


>gi|239825590|ref|YP_002948214.1| DNA gyrase subunit A [Geobacillus sp. WCH70]
 gi|239805883|gb|ACS22948.1| DNA gyrase, A subunit [Geobacillus sp. WCH70]
          Length = 825

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/766 (33%), Positives = 418/766 (54%), Gaps = 32/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +       ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G
Sbjct: 1   MSENQNP---RIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSA IVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+
Sbjct: 58  MTADKPYKKSAHIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYVLVDGHGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAV
Sbjct: 118 AAAMRYTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +A LAL  NP++++  L+EYI GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVVDAILALSKNPDMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+V E+PYQV K++LIE+IAEL+  K+I  + D+RDES
Sbjct: 237 GRGSITLRAKVEIEQQSNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  +  +++ +++  + ++T F +NM  L     P+V+ L   L+ +L
Sbjct: 297 DRSGMRIVIEVRRDANSKVILNNLYKHTALQTNFGINMLALVD-GQPKVLNLKECLQHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       +  ++ +FS
Sbjct: 356 DHQKTVIRRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTEIAREGLMRQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ E+
Sbjct: 416 LSERQAQAILDMRLQRLTGLEREKIEQEYQDLIRLIAELKAILADEEKVLQIIRDELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT         +    + +I +E I + ++++G+I+          K
Sbjct: 476 KERFNDE-----RRTEIV--IGGIEEFDDEDLIPRENIVITLTHKGYIKRLPVSTYKSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQL 592
                +  +H  E D ++  L   T D +L  +  GK Y      +        G  I  
Sbjct: 529 RGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPEFGRTARGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L++L+ ++ I T       +D    L   + +G A     S        G   + +   +
Sbjct: 589 LLELDKDEWINTIIPINNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGD 648

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  V    G  H+ V  +N  L+ F    +  M R   GV+  + +DG     +   + 
Sbjct: 649 ELISVKLTDGSKHIIVGTKNGMLIRFPETDVRTMGRSATGVKAITLEDGDEVVGMEI-LE 707

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    +      Y +        +  RGG G        ++G  ++
Sbjct: 708 DDCDVLVVTKNGYGKRTPASEYRIQSRGGKGLKTCNITEKNGSVVA 753



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 8/170 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+H +EGD L        +  I++ + +G     P  ++ +       +   
Sbjct: 633 HIRNNGLIAIHLREGDELISVKLTDGSKHIIVGTKNGMLIRFPETDVRTMGRSATGV-KA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L    ++V   + +  C +LVV+  G       SE    +R GK      +   +   
Sbjct: 692 ITLEDGDEVVGMEILEDDCDVLVVTKNGYGKRTPASEYRIQSRGGKGLKTCNITEKNG-S 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
           +  V  VTG+  + ++     L+  ++  I  M R  +GV+L    D   
Sbjct: 751 VVAVKTVTGEEDLMLITAGGILIRIAVSDISRMGRNTQGVKLIRLSDDDE 800


>gi|302872929|ref|YP_003841562.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B]
 gi|307687882|ref|ZP_07630328.1| DNA gyrase subunit A [Clostridium cellulovorans 743B]
 gi|302575786|gb|ADL49798.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B]
          Length = 837

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/758 (33%), Positives = 402/758 (53%), Gaps = 18/758 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N+    E     V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+G
Sbjct: 1   MNNN----EGKTLPVDISNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      +K ARIVG+V+GK HPHGD SVYD+LVRLAQ F  RY L+ G GNFG++DGD 
Sbjct: 57  ITPDKPHRKCARIVGDVLGKYHPHGDSSVYDALVRLAQDFSMRYTLVDGHGNFGSVDGDG 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM ++A  +++ ++++ VDF   Y+ ++ EP V PS+FPNLL NG+SGIAV
Sbjct: 117 AAAMRYTEARMDKMANEMVRDINKNTVDFIPNYDGDEQEPTVIPSRFPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +    LI+NPE ++  L+  I GPDFPT G I+  +  I E+Y  
Sbjct: 177 GMATNIPPHNLTEVIDGVNLLIENPEATVLDLMTKIKGPDFPTAG-IIMGKSGIREAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA   +EE G G   I+VTEIPYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 236 GRGKVVVRANATIEEDG-GRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R  +P++++  ++  + ++  F + M  L     P+V+ L  +L  +L
Sbjct: 295 DRDGMRIVIELKRDANPNVILNQLYKHTKLQDSFGIIMLALVD-NQPKVLNLKEVLVHYL 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             ++EV+ RR+ F ++  + R  IL+GL IA  NIDE+I+IIR+    ++ K  +  RF+
Sbjct: 354 NFQKEVITRRTQFELEKAEARAHILEGLKIALDNIDEVISIIRSSKSTNEAKERLQERFA 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AI+ +RLRSL  LE  +I+ EL  L+A   K+  +L +     N I  E+ E+
Sbjct: 414 LSEKQSTAIVEMRLRSLTGLERQKIEDELSELMALINKLKEILANEALILNIIRDELNEI 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K  F          +             +  +       +         + K     + A
Sbjct: 474 KGRFGDERRTAIEASQNDINIEDLIQEHKVVVTLTRAGYIKRIAESTYSAQKRGGKGIQA 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQ 600
              KE D ++      T D IL  S  G+ YTL    +       +      L+ L   +
Sbjct: 534 ATTKEDDIVENIFVTSTHDHILFFSNFGRVYTLKGYEIPEAGRTAKGTNVINLLLLRPEE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        ++ +  L+  + KG        +     + G   + +  ++++  V   +
Sbjct: 594 KIQAVITLSEFEKSQYLVFGTKKGIIKKTTLEDFSNIRKNGLNAVGLREDDELISVRLSS 653

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G D + +V +N   + F  + +  M R   GV+  S +D      +   + E +  +  +
Sbjct: 654 GEDQIIMVTQNGYSIRFKEEDVRPMGRTATGVKGISLRDEDNVVSMEI-VDESMDILVVS 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              Y +           RGG+G +  K   ++GK +++
Sbjct: 713 ENGYGKRTPIGEYKCQNRGGMGIITYKVSEKTGKVVAA 750



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 6/156 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D+I++++ +G +      ++         +   I L    ++V+  + D +  +LVVS  
Sbjct: 656 DQIIMVTQNGYSIRFKEEDVRPMGRTATGV-KGISLRDEDNVVSMEIVDESMDILVVSEN 714

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGDH-VAVVGENRKLLIFSID 676
           G        E     R G   +     E   K+     V  +H + ++     ++  +  
Sbjct: 715 GYGKRTPIGEYKCQNRGGMGIITYKVSEKTGKVVAATMVNDEHEIMIINSADIVIRINSK 774

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           +I    R   GV L    D      I   I +    
Sbjct: 775 EISTTGRSAMGVTLMRNNDETKVLAIAKVISDDEEI 810


>gi|262274466|ref|ZP_06052277.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886]
 gi|262221029|gb|EEY72343.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886]
          Length = 875

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/792 (33%), Positives = 396/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P++ PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPEVMPTRIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA I+N +I+IE+L+ +I GPDFPT  +I   R+ I ++YR 
Sbjct: 177 GMATNIPPHNLTEVVNGCLAYIENEDITIEELMTHIPGPDFPTAAMIN-GRKGIEDAYRT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   IVVTEIPYQV K+RLIEKIAEL+  K+I  +  +RDES
Sbjct: 236 GRGKIYLRSKADIETDKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKIEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVAEVILNNLYAQTQLQTSFGINMVALD-NNQPRLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-------------- 411
            HRREV+ RR+ F ++    R  IL+GL IA  NIDEII +IRN                
Sbjct: 355 NHRREVVTRRTIFELRKARDRAHILEGLAIALANIDEIIELIRNAQTPAVAREALQNRGW 414

Query: 412 -----------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      V   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGTVAVMLEATGVDAARPEWLEDEFGVRDGKYYLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL    ++  +L+S ++    I  E+  V++ F           +          
Sbjct: 475 DEYKELLTLIGELMFILSSPERLMEVIREELEAVRDGFGDERRTEITAASADIDIEDLIN 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D IL  ST
Sbjct: 535 QEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATRMKEEDFIERLLVANTHDTILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L   S    G+ I  L+ L  ++ I        Y+    + + +S G  
Sbjct: 595 RGRMYWLKVYQLPLASRTARGKPIVNLLPLEQDERITAILPVKEYEDDKFVFMATSDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +   + +  V    GD  V +  ++ K++ F   Q+  M 
Sbjct: 655 KKTPLTDFSRPRSAGIIAVNLREGDSLIGVDITWGDNDVMLFSKSGKVVRFHESQVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     +G     +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGIKLAEGDKVVSLIVPHNEGD-VLTVTENGYGKRTELCEYPAKSRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGCVVGA 785



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 103/338 (30%), Gaps = 21/338 (6%)

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
              E     ++         +   + +++   +   +      + + +       S T  
Sbjct: 512 FGDERRTEITAASADIDIEDLINQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATRM 571

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           + +  +   L  +    +  +       +   +     L S   +   I   +       
Sbjct: 572 KEEDFIERLL--VANTHDTILCFSTRGRMYWLKVYQLPLASRTARGKPIVNLL------- 622

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
               +   R T    V        +   +     TV  +        +  S  + A++ +
Sbjct: 623 --PLEQDERITAILPVKE--YEDDKFVFMATSDGTVKKTPLTDFSRPR--SAGIIAVNLR 676

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGDSL         + ++L S  GK        + +      A    I L     +V+  
Sbjct: 677 EGDSLIGVDITWGDNDVMLFSKSGKVVRFHESQVRAMGRTA-AGVRGIKLAEGDKVVSLI 735

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVA 662
           V  +   +L V+  G     E  E  A +R   G   +KVS      +  V   TG    
Sbjct: 736 VPHNEGDVLTVTENGYGKRTELCEYPAKSRATQGVVSIKVSERNGCVVGAVQVDTGYEFM 795

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           ++     L+   + ++ ++ R  +GVRL    +G    
Sbjct: 796 MITNGGTLVRTRVAEVSQVGRNTQGVRLIRTSEGERVV 833


>gi|150014899|ref|YP_001307153.1| DNA gyrase subunit A [Clostridium beijerinckii NCIMB 8052]
 gi|149901364|gb|ABR32197.1| DNA gyrase, A subunit [Clostridium beijerinckii NCIMB 8052]
          Length = 828

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/753 (33%), Positives = 405/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  V  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++++ E+GL    
Sbjct: 2   DFNEGKVIPVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQELGLTPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS+FPNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  + LIDNPE ++ +L+  I GPDFPTG   +  +  I  +Y  G+G  
Sbjct: 182 IPPHNLAEIIDGTIMLIDNPESTVLELMTKITGPDFPTGA-TIMGKAGIRAAYETGKGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA   +EE   G   I+VTEIPYQV K++L+E IA+L+  K+I  + D+RDES  D  
Sbjct: 241 IVRANAEIEEEN-GRHSIIVTEIPYQVNKAKLVENIADLVKDKKITGISDLRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P +++  ++  + ++  F + M  L     P+V+ L  IL+ ++  ++E
Sbjct: 300 RIVIELKRDANPSVVLNLLYKHTKLQDTFGIIMLALV-NNEPKVLNLKQILENYVEFQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +   + R  IL+GL IA  NIDE+I+IIRN +     K  ++ RF L+E Q
Sbjct: 359 VITRRTIFDLNKAEARAHILEGLKIALDNIDEVISIIRNSNTTEIAKNTLMERFELSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I+ E + L+ + E + S+L S ++  + I  E+ E+K  +S
Sbjct: 419 SQAILEMRLRRLTGLERGKIEEEYNELMKQIEYLKSILASEEKLLDVIKEELLEIKNRYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     S +     + A+  KE
Sbjct: 479 DERKSKIEKIVNEIDIEDLIQEEDVVITLTHSGYIKRISADTYSSQRRGGKGIQAMSTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  +   T   +L  +  G+ Y L A  +       +      LI +  ++ I T 
Sbjct: 539 DDFVEHLMITSTHSDVLFFTNKGRVYKLRAYEVHDAGRQAKGTNLINLIAIEPDEKIQTV 598

Query: 606 FVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                  K   L + + +G       SE     + G   + +   +++  V    GD ++
Sbjct: 599 LTVTDEKKEGFLFMGTKQGIVKKTPLSEFKNLRKNGLIAISLKDGDELLKVKNTYGDANI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            VV +N   + F+   +  M R   GV+  + K+  I+  +   + +G   +  +   Y 
Sbjct: 659 MVVTQNGYAVKFNERDVRSMGRTASGVKAINLKEDDIAVCMDIAV-DGEELLVISENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +        L  RGGVG +  K   ++GK   +
Sbjct: 718 KRTPIAEYKLQNRGGVGLITYKISEKTGKLAGA 750



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 6/169 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A+  K+GD L    + +    I++++ +G A      ++ S      +    I+L  
Sbjct: 634 GLIAISLKDGDELLKVKNTYGDANIMVVTQNGYAVKFNERDVRSMGRTA-SGVKAINLKE 692

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVK 655
           +   V   +     +LLV+S  G       +E     R G   +     EK   +     
Sbjct: 693 DDIAVCMDIAVDGEELLVISENGYGKRTPIAEYKLQNRGGVGLITYKISEKTGKLAGATI 752

Query: 656 VT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               D + ++  +   +  ++  I   SR   GV L    +      I 
Sbjct: 753 CKVDDELMLINSSGVAIRINVADISVTSRSAMGVTLMRTNEDEKVVAIA 801


>gi|83588882|ref|YP_428891.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073]
 gi|83571796|gb|ABC18348.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073]
          Length = 814

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/762 (31%), Positives = 385/762 (50%), Gaps = 13/762 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +            +  V L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MAKEGGKYLALETSGKIMPVILEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E GL     +KKSA +VG V+ + HPHGD +VY+++VRLAQ F  RYPLI G GNFG+
Sbjct: 61  MYEEGLTPDKPYKKSAVVVGTVLARYHPHGDAAVYETMVRLAQDFACRYPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDS AA RYTEAR++++A  +L  +D+D VDF D Y+    EPVV P++ P LL NG+
Sbjct: 121 VDGDSPAAMRYTEARLSKLALTMLADIDKDTVDFVDNYDGSLKEPVVLPARIPQLLVNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E+ +A + LID P+  ++++ + I GPDFPT G ++  RE I 
Sbjct: 181 AGIAVGMATNIPPHNLGEVIDALVLLIDKPDADLKEITKIIKGPDFPTAG-LIIGREGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +YR GRG  +VRA+  VE +  G   IVVTEIPYQV K+RL++ I +L+  K+I  + D
Sbjct: 240 NAYRTGRGSIKVRAKAQVETLSNGKSQIVVTEIPYQVNKARLVQSIGDLVREKKIDGIVD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES      ++    R + P +++  ++  + M+  F + M  L     P+V+ L  +
Sbjct: 300 LRDESDRTGMRIVIELRRDVQPKVILNQLYKHTQMQENFGVIMLALVD-GRPRVLNLREM 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VM 417
           L  +L H++EV+ RR+ + +   + R  I+ GL IA   +DE+I IIR           +
Sbjct: 359 LTLYLDHQKEVITRRTRYLLAQAEARAHIVAGLRIAIQFLDEVIRIIRQAPNEPEACRGL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF L++ Q  AI+++RL  L  LE  +++ E   L         +L S  + +  +  
Sbjct: 419 MERFQLSDKQAKAIVDMRLGRLTALEREKLEEEWQELQKRIAYYQEVLASEARVYAIVRD 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K  F+                    A     +       +        RS K   
Sbjct: 479 ELLEIKRKFADPRRTQIVLEEENLELEDLIAREDIVVTLTHRGYIKRQPVDTYRSQKRGG 538

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
             + A+  +E D ++      T   +L  +  G+ + L    +     +  G  +  L+ 
Sbjct: 539 RGIQAMGTREEDIVRDIFVTTTHHYLLFFTNQGRVFRLRGHEIPEAGRQARGTPLVNLLY 598

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           LN  + I         +    LL+ + KG        E   + R G   + +  ++ +  
Sbjct: 599 LNKGETITAVIPIRELEEDSYLLMATRKGIVKKTSLGEYHTSRRDGLLAINLDEDDDLVG 658

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V++  G + V +V    K + F  D++  M R  +GVR  +  D  +  V   K+ E   
Sbjct: 659 VLRTEGNNEVMLVTRRGKAIRFGEDEVRPMGRAARGVRGIALDDDDMV-VGLVKVREDAE 717

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + R + +           RGG G +      R+G   +
Sbjct: 718 LVVVSERGFGKRTTLEEYRPQGRGGKGIITMNVTDRTGPVAA 759



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 64/185 (34%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++          S    L A++  E D L   L     + ++L++  GKA       +  
Sbjct: 628 IVKKTSLGEYHTSRRDGLLAINLDEDDDLVGVLRTEGNNEVMLVTRRGKAIRFGEDEVRP 687

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  ++  I L+ +  +V         +L+VVS +G        E     R GK  +
Sbjct: 688 MGRAARGVRG-IALDDDDMVVGLVKVREDAELVVVSERGFGKRTTLEEYRPQGRGGKGII 746

Query: 643 KVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            ++  ++   V  V      D + ++     L+   ++ I    R  +GV L   +    
Sbjct: 747 TMNVTDRTGPVAAVAVVKLEDELMLISAEGILIRLGVEDISRQGRNTQGVTLMRLEPSDR 806

Query: 698 SDVIC 702
              + 
Sbjct: 807 VVAMA 811


>gi|118445174|ref|YP_879292.1| DNA gyrase subunit A [Clostridium novyi NT]
 gi|118135630|gb|ABK62674.1| DNA gyrase, A subunit [Clostridium novyi NT]
          Length = 843

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/759 (33%), Positives = 406/759 (53%), Gaps = 28/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     +
Sbjct: 3   NEGNIIPVDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+V+GK HPHGD +VYD+LVR+AQ F  RY L+ G GNFG++DGD AAA RYT
Sbjct: 63  RKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP
Sbjct: 123 EAKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+       IDNP+IS+ +L+  I GPDFPT GIIV  +  I  +Y  GRG   +
Sbjct: 183 PHNLTEVINGISKYIDNPDISVAELMAEIKGPDFPTAGIIV-GKSGIKRAYETGRGKVVI 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +EE  +G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES      +
Sbjct: 242 RSKAEIEEDEKGKSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDRQGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++  ++  + M+  F + M  L     P+V+ L  +LK ++  + EV+
Sbjct: 302 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALV-NGEPRVLSLKEVLKHYIKFQEEVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F +     R  IL+GL IA  +IDE+I +IR+     + +  ++S+F+L+E Q +
Sbjct: 361 TRRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLMSKFNLSEKQAN 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L+ L  LE  +I+ E   L+   +    +L++       I  E+ E+K  +   
Sbjct: 421 AILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILSNKDLLLKIIKDELNEIKIKYGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT              + +IE++ + + +++ G+I+          +     + 
Sbjct: 481 -----RRTEIV--HGDGNDIDIEDLIEEKDVVITLTHAGYIKRLPVETYSAQRRGGRGIQ 533

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHN 599
           A+  KE D ++  + + T D IL  S  G+ Y L A  +       + +    L+ L  N
Sbjct: 534 AMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEAGRTAKGMNLINLLPLEKN 593

Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I        +     L++ +  G        +  +  + G   + +   +++  V   
Sbjct: 594 EKIQNVIYLKEFKPDRYLIMGTKNGLIKKTSLDQYSSIRKNGLNAINLRENDELISVRVT 653

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           TGD ++    +N   + F  +    M R   GV+  + +D      +     E    +  
Sbjct: 654 TGDCNIIYATKNGYAIKFDENDARPMGRNATGVKAITLRDDDEVVSMEVASDERD-LLVV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   Y +        L KRGG G +  K   ++G  + +
Sbjct: 713 SENGYGKRTPIKEYTLQKRGGKGVITYKISEKTGLLIGA 751


>gi|237808193|ref|YP_002892633.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187]
 gi|237500454|gb|ACQ93047.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187]
          Length = 862

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  +++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+ 
Sbjct: 1   MSD----LAKEIIPINIEDELRNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELS 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMDRIAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LAL++N E++I++L++ I GPDFPTGG I+  R  I+++YR 
Sbjct: 177 GMATNIPPHNLTEVVDGCLALMENSELTIDELIQLIPGPDFPTGG-IINGRSGILDAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRAR  +E +   G   I+VTE+PY V K+RL+EKIAEL+  K+I  +  +RDE
Sbjct: 236 GRGKIYVRARTEIETDEKNGKESIIVTELPYTVNKARLVEKIAELVKDKKIEGITALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   V+    R    ++++ +++  + M+  F +NM  L     P+ + L  IL  +
Sbjct: 296 SDKDGMRVVIELRRGELTEVMLNNLYTHTQMQNVFGINMVALV-NGQPKTLNLKEILAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID +I +I+N   P           
Sbjct: 355 IDHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIKNSSSPAEAKQGLVARG 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LTE Q  AIL+LRL  L  LE  +I
Sbjct: 415 WALGAVAEMLERAGGDAARPEWLEPEFGIRDDHYFLTEQQAQAILDLRLHKLTGLEHEKI 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL E  ++  +L S ++    I  E+  VK  F        +  +         
Sbjct: 475 LDEYRELLGEIAELLRILASPERLMEVIREELEFVKSQFGDKRRTEIQAASIEINMEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      +A   K+ D ++  L A+T D IL  S
Sbjct: 535 TPEDVVVTLSHEGYVKYQPLSDYEAQRRGGRGKAAAKVKDEDFVEQLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           T GK Y L    L        G  I  L+ L+ N+ I        YD    +   +  G 
Sbjct: 595 TQGKVYWLKVYQLPEASRTARGRPIINLLPLDENERITAILPVKSYDDDKYVFFATGDGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
               E S        G   + ++  + +  V    G+  + +  +  K++ F+   +  M
Sbjct: 655 VKKTELSAYSRPLSSGIRAINLNEGDSLIGVAITDGNSEIMLFSDAGKVVRFNESDVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +     V       G   + +    Y +  +     +  R  +G + 
Sbjct: 715 GRTATGVRGMKLGETDKV-VSLIVPQNGGAILTATENGYGKRTDLAEYPVKSRATLGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            +   R+GK + +
Sbjct: 774 IQVTERNGKVVGA 786



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/366 (12%), Positives = 101/366 (27%), Gaps = 23/366 (6%)

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              L  +++E L   +     +    +QA    + +   +    + +             
Sbjct: 495 PERLMEVIREELEFVKSQFGDKRRTEIQAASIEINMEDLITPEDVVVTLSHEGYVKYQPL 554

Query: 414 KPVMVSRFSLTENQVDAILNLRLR---SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                 R          + +        +    +  +       +   +       S   
Sbjct: 555 SDYEAQRRGGRGKAAAKVKDEDFVEQLLVANTHDTILCFSTQGKVYWLKVYQLPEASRTA 614

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
           +   I   +           D   R T    V        +         TV  +     
Sbjct: 615 RGRPIINLL---------PLDENERITAILPVKS--YDDDKYVFFATGDGTVKKTELSAY 663

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                 S  + A++  EGDSL           I+L S  GK       ++ S       +
Sbjct: 664 SR--PLSSGIRAINLNEGDSLIGVAITDGNSEIMLFSDAGKVVRFNESDVRSMGRTATGV 721

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSE 647
           + +  L     +V+  V  +   +L  +  G     + +E    +R     + +      
Sbjct: 722 RGM-KLGETDKVVSLIVPQNGGAILTATENGYGKRTDLAEYPVKSRATLGVISIQVTERN 780

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFK 704
            K+   ++V   D + ++     L+   + ++  + R   GVRL    +D  +  +    
Sbjct: 781 GKVVGAIQVDESDEIMLITNAGTLVRTRVSEVGLIGRNTAGVRLIRTAEDEKLVSLERVA 840

Query: 705 ICEGLT 710
             EG  
Sbjct: 841 EPEGDE 846


>gi|254520690|ref|ZP_05132746.1| subunit A [Clostridium sp. 7_2_43FAA]
 gi|226914439|gb|EEH99640.1| subunit A [Clostridium sp. 7_2_43FAA]
          Length = 848

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 399/753 (52%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V ++ +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+ +MSE+GL    
Sbjct: 2   SLNEGKVISIDINKEMKRCYIDYAMSVIVGRALPDVRDGLKPVHRRILFSMSELGLAPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ + ++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIAAEMLRDISKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  + LIDNPE ++ +L+  I GPDFPTG   +  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPETTVLELMTAIKGPDFPTGA-TIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE       I+VTEIPYQV K++LIE IA+L+  K+I  + D+RDES  D  
Sbjct: 241 IVRAKAEIEEEN-NRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  +P++++  ++  + M+  F + M  L     PQV+ L  +L  ++  ++E
Sbjct: 300 RIVIELKKDANPNVILNLLYKHTKMQDTFGVIMLALV-NNEPQVLNLKQVLANYIEFQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +   + R  IL+GL IA  NIDE+I IIR+       K  ++ RF L+E Q
Sbjct: 359 VVTRRTVFELNKAEARAHILEGLRIALDNIDEVINIIRSSKTTEIAKNTLIERFQLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I+ E   L+   + ++S+L S ++  + I  E+ E+K  ++
Sbjct: 419 AQAILEMRLRRLTGLERDKIEEEFAELMKLIDYLNSILASEEKLLSVIKDELIEIKNRYN 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +              +  +       +   +     S +     + A+  KE
Sbjct: 479 DERRTSIEKVVNDIDIEDLIQEEEVVITLTHSGYIKRISADTYSSQRRGGRGIQAMSTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++      T   +L  +  G+ Y L A  +       +      LI +  ++ I T 
Sbjct: 539 DDFVEHVNVVSTHSDVLFFTNRGRVYKLRAYEIPDAGRTAKGTNIINLIAIEQDEKIETV 598

Query: 606 FVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                      L + + +G       SE     + G   + +   +++  V    GD  +
Sbjct: 599 LSVKDDVNEGFLFMGTKQGLVKKTPLSEFKNLRKNGLIAINLRDGDELLKVKITRGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V ++   + F+   +  M R   GVR  + +   I+  +   + EG   +  +   + 
Sbjct: 659 VIVTQDGNAIRFNETDVRPMGRTASGVRSINLRKDDIAVCMDIAV-EGEDLLVISENGFG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +          KRGG G +  K   ++GK + +
Sbjct: 718 KRTPITEYKRQKRGGTGLITYKLSEKTGKVIGA 750



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 11/162 (6%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I++++ DG A      ++        +    I+L  +   V   +      LLV+S  G 
Sbjct: 658 IVIVTQDGNAIRFNETDVRPMGRTA-SGVRSINLRKDDIAVCMDIAVEGEDLLVISENGF 716

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQI 678
                 +E     R G   +     EK   +         D + ++  +   +  ++  I
Sbjct: 717 GKRTPITEYKRQKRGGTGLITYKLSEKTGKVIGATICKIDDELMLINTSGVAIRINVSDI 776

Query: 679 PEMSRGK-GVRLQSYKDGGISDVI-----CFKICEGLTWIDS 714
              SR   GV L    +      I          E    +DS
Sbjct: 777 SVTSRSTMGVTLMRTTEEEKIAAITKISGSIDDKEEQLTLDS 818


>gi|221134590|ref|ZP_03560895.1| DNA gyrase, A subunit [Glaciecola sp. HTCC2999]
          Length = 885

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/787 (32%), Positives = 393/787 (49%), Gaps = 47/787 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF  
Sbjct: 2   TDRAKEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  +L  +D++ V+F   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMSKIAHELLADLDKETVNFVPNYDGTEKIPEVMPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALI+NP  +IE+L+EYI GPDFPT  II   R+ I E+YR GRG  
Sbjct: 182 IPPHNLTEVINGCVALIENPACTIEELIEYIPGPDFPTAAIIS-GRKGIEEAYRTGRGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR  +E    G   I+V E+PYQV K++LIEKIAEL+  KRI  +  +RDES +D  
Sbjct: 241 YLRARAEIEREDNGKETIIVNELPYQVNKAKLIEKIAELVKEKRIEGVSALRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R+   ++L+  ++  + ++T F +NM  L     P+V  L   L+ ++ HRRE
Sbjct: 301 RIVIEVKRNESAEVLLNHLYANTQLQTVFGINMVALD-NNQPKVFNLKDTLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ + ++    R  +L+GL IA  NID +I +I+    P                 
Sbjct: 360 VVTRRTVYELKKARDRAHLLEGLAIALANIDPVIELIKASPSPSEAKLKLTAQGWALGDV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +    + LTE Q  AIL+LRL  L  LE  +I SE  +
Sbjct: 420 AEMLERAGDDAARPDWLEPEYGIRDGLYYLTEQQAQAILDLRLHKLTGLEHDKILSEYKD 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL    ++  +L S ++    I  E+  +++ F           +               
Sbjct: 480 LLDVIAELLRILGSSERLMEVIREELEAIRDEFGDDRRTEITAASHDIDLEDLIEREDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + K      SA   K+ D ++  L A+T D IL  ST G+ Y
Sbjct: 540 VTLSHEGYVKYQKLSDYEAQKRGGKGKSATKMKDEDFIEKLLVANTHDHILCFSTRGRLY 599

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  ++ L   + I        +     + + ++ G     E 
Sbjct: 600 WLKVYQLPLASRNARGRPIVNILPLEEGERITAILPIKEFVDGKYVFMATTNGTVKKTEL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           ++       G   + ++   ++  V    GD  + +  +  K++ F  +Q+  M R   G
Sbjct: 660 TQYSRPRANGIIAVNLNDGNELIGVDLTDGDSEIMLFSDAGKVVRFHEEQVRPMGRTATG 719

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    ++      +     EG   + +    Y +  +        R   G +  K   R
Sbjct: 720 VRGIRLEEDQKVVSLIVPQGEGA-VLTATENGYGKRTDIAEYPAKSRATKGVVSIKVSER 778

Query: 747 SGKFLSS 753
           +G  + +
Sbjct: 779 NGLVVGA 785


>gi|308171898|ref|YP_003918603.1| DNA gyrase subunit A [Bacillus amyloliquefaciens DSM 7]
 gi|307604762|emb|CBI41133.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens DSM 7]
 gi|328551707|gb|AEB22199.1| DNA gyrase subunit A [Bacillus amyloliquefaciens TA208]
 gi|328909966|gb|AEB61562.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens LL3]
          Length = 819

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/764 (33%), Positives = 421/764 (55%), Gaps = 31/764 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  NT     V+ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQNTP---QVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  +  +++ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 297 DRNGMRVVIELRRDANAHVILNNLYKQTALQTSFGINLLALVD-GQPKVLSLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+A   ++  +L + ++    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEERVLEIIREELNEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +IE+E I + +++ G+++          K
Sbjct: 476 KERFNDE-----RRTEIV--TSGLETIEDEDLIERENIVITLTHNGYVKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +       +   I  
Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEYGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +D    L   + +G +     S+       G   L +  +++
Sbjct: 589 LLEVEKGEWINAIIPVSTFDEELYLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F  + + +M R   GV+  +  D  +   +   + E
Sbjct: 649 LMAVRLTDGKKQIIIGTKNGLLIRFPEEDVRQMGRTAAGVKGITLTDDDVVVGMEI-LEE 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        +  RGG G    K    +G  +
Sbjct: 708 DSHVLIVTENGYGKRTPASEYRVQSRGGKGLKTCKITDSNGPLV 751



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 6/176 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL  +E D L          +I++ + +G     P  ++        A    
Sbjct: 632 NIRNNGLIALGLREDDELMAVRLTDGKKQIIIGTKNGLLIRFPEEDVRQMGRTA-AGVKG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L  +  +V   + +    +L+V+  G       SE    +R GK        +    +
Sbjct: 691 ITLTDDDVVVGMEILEEDSHVLIVTENGYGKRTPASEYRVQSRGGKGLKTCKITDSNGPL 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
             V    G+  + ++  +  L+   I+ I    R  +GVRL    D      +   
Sbjct: 751 VTVKATRGEEDLMIITASGVLIRMDINDISTTGRVTQGVRLIRMSDQEHVATVALV 806


>gi|168187271|ref|ZP_02621906.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
 gi|169294765|gb|EDS76898.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
          Length = 846

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/759 (33%), Positives = 402/759 (52%), Gaps = 28/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E N+    +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     +
Sbjct: 3   NEGNIIPRDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+V+GK HPHGD +VYDSLVR+AQ F  RY L+ G GNFG++DGD AAA RYT
Sbjct: 63  RKSARIVGDVLGKYHPHGDTAVYDSLVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP
Sbjct: 123 EAKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+       IDNP+IS+ +L+  I GPDFPT GIIV  +  I ++Y  GRG   +
Sbjct: 183 PHNLTEVINGINKYIDNPDISVAELMAEIKGPDFPTAGIIV-GKSGIKKAYETGRGKVII 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +EE  +G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES  +   +
Sbjct: 242 RSKAEIEEDEKGKNRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++  ++  + M+  F + M  L     P+V+ L  +LK ++  + EV+
Sbjct: 302 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALV-NGEPRVLSLKEVLKHYIKFQEEVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
            RR+ F +     R  IL+GL IA  +IDE+I +IR+            S+F+L+E Q +
Sbjct: 361 TRRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLISKFNLSEKQAN 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L+ L  LE  +I+ E   L+   +    +L+        I  E+ E+K  +   
Sbjct: 421 AILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILSDKDLLLKIIKDELNEIKVKYGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT              + +IE+  + + +++ G+I+          +     + 
Sbjct: 481 -----RRTEIV--HGDGNDIDIEDLIEETDVVITLTHAGYIKRLPVETYSAQRRGGRGIQ 533

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHN 599
           A+  KE D ++  + + T D IL  S  G+ Y L A  +       + +    L+ L  +
Sbjct: 534 AMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEAGRTAKGMNLVNLLPLEKD 593

Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I        +     L++ +  G        +  +  + G   + +   +++  V   
Sbjct: 594 EKIQNVIYLKEFKPDRYLIMGTKNGLIKKTSLDKYSSIRKNGLNAINLRENDELISVRVT 653

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           TGD ++    +N   + F  + +  M R   GV+  + +D      +     E    +  
Sbjct: 654 TGDCNIIYATKNGYAIKFDENDVRPMGRNATGVKAITLRDDDEVVSMEVASDERD-LLVV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   Y +        L KRGG G +  K   ++G  + +
Sbjct: 713 SENGYGKRTPIKEYTLQKRGGKGVITYKISEKTGLLIGA 751


>gi|20806553|ref|NP_621724.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20514991|gb|AAM23328.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 807

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/748 (33%), Positives = 399/748 (53%), Gaps = 14/748 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V +   +   Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+EMGL     +KK
Sbjct: 6   DKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RYTEA
Sbjct: 66  SVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP H
Sbjct: 126 RLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDNP I++++L++YI GPDFPTGGII+  R+ I E+Y  GRG   VRA
Sbjct: 186 NLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIIVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   IV+TEIPY V K++LIEKIAEL+  K+I  + D+RDES  +   ++ 
Sbjct: 245 KAEIEEHK-GKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++P +++  ++M + M+  F   M  L     P+++ L  I+++++ H+ +V+ R
Sbjct: 304 ELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYVDHQADVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA   IDE+I IIR+       K  ++ RF L++ Q  AI
Sbjct: 363 RTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFGLSDKQAQAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K  ++    
Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKNKYASPRK 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                                 +       +        +S K     +  +  +E D +
Sbjct: 483 TVIVAKEEELDFEDLVQLEDVVVTMTHYGYIKRMPLDTYKSQKRGGKGILGISTREDDFV 542

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY- 608
           +      T DR+L  +  GK Y+L   ++       +  AI  LI ++  + +       
Sbjct: 543 EDIFITTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEKVTAVIPLK 602

Query: 609 --DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665
             D    +L+ + KG        E  +  R G   + +   +++  V    G+  V +  
Sbjct: 603 KSDDIKYVLMCTKKGIIKKTSIEEFKSIKRNGIIAITLDENDELINVKLTNGEREVIIGT 662

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
                + F+   +  M R  +GV   S ++      +     +G   +    + + +  +
Sbjct: 663 AKGYAIRFNEKDVRPMGRVARGVMAISLREDDEVVEMDLVHPDGE-VLTVTEKGFGKRTD 721

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +  R G G +  K   ++GK +S
Sbjct: 722 LEEYRIQGRAGKGIIAMKLSKKTGKLVS 749



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 64/480 (13%), Positives = 148/480 (30%), Gaps = 23/480 (4%)

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + A    E        I+   + +Q        K       +R  +LE ++       
Sbjct: 330 AIMLALVDGEPKILNLKQIIEKYVDHQADVVTRRTKFDLKKAEERAHILEGLKIALDYID 389

Query: 310 RIVLFPKNRSLDP--DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            ++   ++   +      +   F LSD + +  ++M +  +  + +   ++  LKE +  
Sbjct: 390 EVINIIRSSKTEAIAKENLMKRFGLSDKQAQAIVDMRLGRLTGLERQ-KVEDELKELIEK 448

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-VMVSRFSLTEN 426
            +E+    +  R      + E+L+           +I     E   +  V +    +T  
Sbjct: 449 IKELKEILADERKVLEIIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMT 508

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
               I  + L + +  +         +   +    D  + +   +      + +      
Sbjct: 509 HYGYIKRMPLDTYKSQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRT 568

Query: 487 SKSTDLGRRRT-------TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
               + GR+                   A +     +     ++ + +G I+        
Sbjct: 569 IDIPESGRQAKGTAIVNLIQISQGEKVTAVIPLKKSDDIKYVLMCTKKGIIKKTSIEEFK 628

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   E D L      +    +++ +  G A      ++         +   
Sbjct: 629 SIKRNGIIAITLDENDELINVKLTNGEREVIIGTAKGYAIRFNEKDVRPMGRVARGVM-A 687

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKV-SSEEKM 650
           I L  + ++V   +     ++L V+ KG     +  E     R GK    +K+     K+
Sbjct: 688 ISLREDDEVVEMDLVHPDGEVLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSKKTGKL 747

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +  V   D   ++  N  L+   +  I +M R  +GV L   +DG           E 
Sbjct: 748 VSIRCVQPEDEFMIISANGILIRMKVKDISKMHRDTQGVTLMKLEDGDRVVSTARIESEE 807


>gi|152973860|ref|YP_001373377.1| DNA gyrase subunit A [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022612|gb|ABS20382.1| DNA gyrase, A subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 821

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG+IDGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSIDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M++++  +L+ + ++ +D++D Y+  + EPVV P++FPNLL NG +GIAV
Sbjct: 119 AAAMRYTEAKMSKISMELLRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGATGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NPEI+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSRNPEITIAELMEYIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSITLRAKVEIEEKANGRQSIIVTEIPYQVNKARLIEKIAELVRDKKIDGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++L+ +++  + ++T F +NM  L     P+V+ L   L  +L
Sbjct: 298 DRRGLRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVD-GEPKVLNLKQTLYYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF+
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFA 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   LL    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQELLKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+       RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFNDE-----RRTEIT--IGGIESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILYFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++++ ++ +        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLEVDKDEWVNAIIPIREFGDDQFLFFTTKQGISKRTPLSSFSNIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLDEDDHVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        +  RGG G        ++GK ++
Sbjct: 709 NMNVLIVTKNGYGKRTPIEEYRIQSRGGKGLKTCNITEKNGKLVA 753



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 68/175 (38%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L+ +  +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLDEDDHVVGMEIVEENMNVLIVTKNGYGKRTPIEEYRIQSRGGKGLKTCNITEKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   ++QI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVEQISQMGRNTQGVRLIRLEDDQEVATVA 805


>gi|210624031|ref|ZP_03294148.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
 gi|210153238|gb|EEA84244.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
          Length = 816

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/758 (33%), Positives = 407/758 (53%), Gaps = 15/758 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +        +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++M+E+ 
Sbjct: 1   MQDEKNTS--RILPIEIASEMKKSYIEYSMSVIVGRALPDVRDGLKPVHRRILYSMNELN 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     ++KSARIVG+V+GK HPHGD SVY ++V++AQ F  R PL+ G GNFG++DGDS
Sbjct: 59  LSPDKPYRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRVPLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM++++  +L+ +D++ VDF   ++E   EP+V P++FPNLL NG++GIAV
Sbjct: 119 PAAMRYTEARMSKLSMELLRDIDKETVDFGPNFDESLKEPLVLPARFPNLLVNGSNGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN+ E+ +A + LID P+  +E+L+ Y+ GPDFPTG  I+   ESI E+YR 
Sbjct: 179 GMATSIPPHNLGEVIDATVHLIDRPDADVEELMGYVKGPDFPTGA-IIMGTESIKEAYRT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRAR  +EE+ +G   IVVTEIPYQV K+RL+E+IAEL+  K+I  + D+RDES
Sbjct: 238 GRGKIKVRARAEIEELPKGKQQIVVTEIPYQVNKARLVERIAELVKDKKIEGISDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R ++ ++++ +++  S ME    + M  L     P+ + L  +L  ++
Sbjct: 298 NRNGMRIVIELKRDVNANIILNNLYKHSQMEETISVIMIALV-NGEPKCLNLKEVLHYYI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H+++V+ RR+ + +   + R  IL+GL IA  NID +I  IR+     + K  +V RF 
Sbjct: 357 EHQKDVVTRRTKYELNKAEARAHILEGLKIALDNIDAVIETIRSSKTSSEAKEKLVERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL +RL  L  LE  +I +E D L+ +  ++  +L S +     I  EI E+
Sbjct: 417 LTEIQAQAILEMRLNRLTGLEREKIDAEYDELMKKIAELKEILASEEVLLGVIKDEIIEI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K  ++       +               + A+       +        RS K     +SA
Sbjct: 477 KNKYTDERRTEIQHAEGEIDVIDLIDEEEIAITLTHFGYIKRLPADTYRSQKRGGRGISA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           L  +E D +K  +   T  R+L  +  G+ + L A  +  G+   +  AI  L+ L   +
Sbjct: 537 LTTREEDFVKHLISTTTHSRLLFFTNRGRVFRLNAYEIPEGKRQAKGTAIVNLLQLGPGE 596

Query: 601 DIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I T    D       LL+ + KG     + S+     + G   + +   +++  V    
Sbjct: 597 KIATLIDVDGKEENKYLLIATKKGMVKKTKISDFKNINKSGLISIGLKEGDEVIGVKLTD 656

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G+  V +V  N   + FS   +  M R   GV+  +  +G     +     EG   +  +
Sbjct: 657 GEQDVMLVTRNGMSIRFSEKDVRGMGRTAMGVKGITLGEGDTVVSMSLA-SEGTDMLVVS 715

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +  +        R G G        ++G  + +
Sbjct: 716 ENGFGKRTDLEEYRSQIRAGKGIKTYNISEKTGSIVGA 753



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 70/199 (35%), Gaps = 12/199 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E+    ++ + +G ++  K           L ++  KEGD +           ++L++ 
Sbjct: 607 KEENKYLLIATKKGMVKKTKISDFKNINKSGLISIGLKEGDEVIGVKLTDGEQDVMLVTR 666

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           +G +      ++         +   I L     +V+  +      +LVVS  G     + 
Sbjct: 667 NGMSIRFSEKDVRGMGRTAMGV-KGITLGEGDTVVSMSLASEGTDMLVVSENGFGKRTDL 725

Query: 629 SEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
            E  +  R GK      +   +   +   +    D + ++  +  L+   +++I    R 
Sbjct: 726 EEYRSQIRAGKGIKTYNISEKTGSIVGAEMVAEDDEMMIINSDGVLIRIKVNEISIFGRV 785

Query: 684 GKGVRLQSYKDGGISDVIC 702
             GV+L +  +      I 
Sbjct: 786 TSGVKLMNVDEEVSIVSIA 804


>gi|254478919|ref|ZP_05092281.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
 gi|214035141|gb|EEB75853.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
          Length = 807

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/748 (33%), Positives = 400/748 (53%), Gaps = 14/748 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V +   +   Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+EMGL     +KK
Sbjct: 6   DKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RYTEA
Sbjct: 66  SVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP H
Sbjct: 126 RLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDNP I++++L++YI GPDFPTGGII+  R+ I E+Y  GRG   VRA
Sbjct: 186 NLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIIVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   IV+TEIPY V K++LIEKIAEL+  K+I  + D+RDES  +   ++ 
Sbjct: 245 KAEIEEHK-GKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++P +++  ++M + M+  F   M  L     P+++ L  I+++++ H+ +V+ R
Sbjct: 304 ELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYVDHQADVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA   IDE+I IIR+       K  ++ RF L++ Q  AI
Sbjct: 363 RTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFGLSDKQAQAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K  ++    
Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKNKYASPRK 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                                 +       +        +S K     +  +  +E D +
Sbjct: 483 TVIVAKEEELDFEDLVQLEDVVVTMTHYGYIKRMPLDTYKSQKRGGKGILGISTREDDFV 542

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY- 608
           +      T DR+L  +  GK Y+L   ++       +  AI  LI ++  + +       
Sbjct: 543 EDIFITTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEKVTAVIPLK 602

Query: 609 --DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665
             D    +L+ + KG        E  +  R G   + +   +++  V    G+  V +  
Sbjct: 603 KSDDIKYVLMCTKKGIIKKTSIEEFKSIKRNGIIAITLDENDELINVKLTNGEREVIIGT 662

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
               ++ F+   +  M R  +GV   S ++      +     +G   +    + + +  +
Sbjct: 663 AKGYVIRFNEKDVRPMGRVARGVMAISLREDDEVVEMDLVHPDGE-VLTVTEKGFGKRTD 721

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +  R G G +  K   ++GK +S
Sbjct: 722 LEEYRIQGRAGKGIIAMKLSKKTGKLVS 749



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 63/480 (13%), Positives = 147/480 (30%), Gaps = 23/480 (4%)

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + A    E        I+   + +Q        K       +R  +LE ++       
Sbjct: 330 AIMLALVDGEPKILNLKQIIEKYVDHQADVVTRRTKFDLKKAEERAHILEGLKIALDYID 389

Query: 310 RIVLFPKNRSLDP--DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            ++   ++   +      +   F LSD + +  ++M +  +  + +   ++  LKE +  
Sbjct: 390 EVINIIRSSKTEAIAKENLMKRFGLSDKQAQAIVDMRLGRLTGLERQ-KVEDELKELIEK 448

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-VMVSRFSLTEN 426
            +E+    +  R      + E+L+           +I     E   +  V +    +T  
Sbjct: 449 IKELKEILADERKVLEIIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMT 508

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
               I  + L + +  +         +   +    D  + +   +      + +      
Sbjct: 509 HYGYIKRMPLDTYKSQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRT 568

Query: 487 SKSTDLGRRRT-------TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
               + GR+                   A +     +     ++ + +G I+        
Sbjct: 569 IDIPESGRQAKGTAIVNLIQISQGEKVTAVIPLKKSDDIKYVLMCTKKGIIKKTSIEEFK 628

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   E D L      +    +++ +  G        ++         +   
Sbjct: 629 SIKRNGIIAITLDENDELINVKLTNGEREVIIGTAKGYVIRFNEKDVRPMGRVARGVM-A 687

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKV-SSEEKM 650
           I L  + ++V   +     ++L V+ KG     +  E     R GK    +K+     K+
Sbjct: 688 ISLREDDEVVEMDLVHPDGEVLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSKKTGKL 747

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +  V   D   ++  N  L+   +  I +M R  +GV L   +DG           E 
Sbjct: 748 VSIRCVQPEDEFMIISANGILIRMKVKDISKMHRDTQGVTLMKLEDGDRVVSTARIESEE 807


>gi|53804242|ref|YP_113878.1| DNA gyrase subunit A [Methylococcus capsulatus str. Bath]
 gi|53758003|gb|AAU92294.1| DNA gyrase, A subunit [Methylococcus capsulatus str. Bath]
          Length = 860

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/788 (31%), Positives = 396/788 (50%), Gaps = 49/788 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   + +  V+L   +++ YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+  
Sbjct: 2   TAFAKEIIPVNLEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD  AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  +D++ VDF   Y++ + EP V P++ PNLL NG++GIAVGMAT+
Sbjct: 122 YTEVRMARIAHDLLADLDKETVDFVPNYDDSEREPSVLPTRIPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +A LALI+NPE  ++ L+ ++ GPDFPT G I+     I E+Y  GRG  
Sbjct: 182 IPPHNLREVVDACLALIENPEAGVQDLMAFVPGPDFPTAG-IINGAAGIREAYLTGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR   E    G   I+V E+PYQV K+RL+EKIAEL+   ++  +  +RDES +D  
Sbjct: 241 YLRARCQFEGEEGGRQSIIVNELPYQVNKARLLEKIAELVKEGKLEGISALRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++ +++  + M++ F +NM  L +   P++M L  ++  ++ HRRE
Sbjct: 301 RMVIELRRGEAPEVVLNNLYQQTQMQSVFGINMVAL-LNGRPRLMNLRDLIAAFIDHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+   ++    R  +L+GL +A  NIDE+I +I++   P                 
Sbjct: 360 VVTRRTLHELRKARERAHVLEGLAVALANIDEVIELIKSSPSPAEAKERLVSRAWRPGVV 419

Query: 420 ---------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+  Q  AIL+LRL  L  LE+ +I +E  
Sbjct: 420 TELLERADAAEASRPRDLDPVYGLREGAYRLSPIQAQAILDLRLHRLTGLEQDKIIAEYR 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            LL +   +  +L    +    I  E+  ++E F                +         
Sbjct: 480 ALLEQIADLLDILAKDTRLMQVIRDELVAIREQFGDPRRTEIIADRLDLSAEDLITEEDM 539

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            +       V        R+ +       A   KE D ++  + A+T D IL  S+ GK 
Sbjct: 540 VVTVSHEGYVKAQPLSDYRAQRRGGRGKQAAATKEEDYIEKLVVANTHDTILCFSSSGKV 599

Query: 573 YTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y L    L   S    G     L+ L   + I        +D    + + ++ G    V 
Sbjct: 600 YWLKVYELPVASRTARGRPFVNLLPLEEGERINAILPIREFDEAHFIFMATASGTVKKVA 659

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GK 685
            SE       GK  +++  ++++  V    G+  V +   + K++ F    +  M R   
Sbjct: 660 LSEFERPRPSGKIAIELRDDDRLVDVAITNGEQDVMLFSSDGKVVCFHETDVRAMGRTAA 719

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR  + ++G    VI   I    T ++     Y +          +RGG G +  +   
Sbjct: 720 GVRGMTLQEGR--KVIALIIASEGTVLNITENGYGKRTRLEEFPRHRRGGQGVIAIQTSA 777

Query: 746 RSGKFLSS 753
           R+G  + +
Sbjct: 778 RNGAVVGA 785



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 61/184 (33%), Gaps = 7/184 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +         +       A+  ++ D L      +    ++L S+DGK       ++ +
Sbjct: 654 TVKKVALSEFERPRPSGKIAIELRDDDRLVDVAITNGEQDVMLFSSDGKVVCFHETDVRA 713

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 A    + L   + ++   +      +L ++  G        E   + R G+  +
Sbjct: 714 MGRTA-AGVRGMTLQEGRKVIALIIASEGT-VLNITENGYGKRTRLEEFPRHRRGGQGVI 771

Query: 643 KV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            +     +   +   +    D + ++ +   L+   + +I  +SR  +GV +     G  
Sbjct: 772 AIQTSARNGAVVGAALVEDEDEIMLITDAGTLVRTRVSEISVLSRNTQGVTVIRLNPGEK 831

Query: 698 SDVI 701
              +
Sbjct: 832 VVGM 835


>gi|127512877|ref|YP_001094074.1| DNA gyrase, A subunit [Shewanella loihica PV-4]
 gi|126638172|gb|ABO23815.1| DNA gyrase subunit A [Shewanella loihica PV-4]
          Length = 879

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/795 (34%), Positives = 413/795 (51%), Gaps = 63/795 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALID P +SIE+L+E+I GPDFPT   IV  R+ I ++Y+ GRG  
Sbjct: 182 IPPHNLSEVISGCLALIDEPSLSIEQLMEHIPGPDFPTAA-IVNGRKGIEDAYKTGRGKA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR  VE    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRARATVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + ++T F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEVKRGEVGEVILNNLYAQTQLQTSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKTKLVSQGWALGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +    + LTE Q  AIL+LRL  L  LE  +I SE + 
Sbjct: 420 QGMLEKAGDDAARPEWLSAEFGIRDGLYYLTEQQAQAILDLRLHKLTGLEHEKILSEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E++EV E+F        RRT   E++ +      + 
Sbjct: 480 LLELIAALLYILRSPERLMEVIKEELQEVLEVFGDE-----RRT---ELNASAVDISLED 531

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+         ++ +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S +  G  I  L+ L   + I        YD+   +++ +S 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRQARGRPIINLLPLAEGERITAILPVREYDADKYVIMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G        +       G   + +   +++  V    GD  V +     K++ FS DQ+ 
Sbjct: 652 GTVKKTSLDQYSRPRANGIIAVNLKDGDQLIGVDITNGDNEVMLFSNEGKVVRFSEDQVR 711

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R   GVR    +DG     +     +G   +      Y +           R   G 
Sbjct: 712 GMGRTATGVRGIKLEDGQSVVSLIVPKNDGA-ILTVTENGYGKRTELDEYPAKSRATKGV 770

Query: 739 LVPKGFPRSGKFLSS 753
           +  K   R+G  + +
Sbjct: 771 VSIKVSERNGAVVGA 785


>gi|164686441|ref|ZP_02210469.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM
           16795]
 gi|164604452|gb|EDQ97917.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM
           16795]
          Length = 811

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/760 (33%), Positives = 419/760 (55%), Gaps = 19/760 (2%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N+  +N      +    +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M+E+
Sbjct: 2   NMEENN-----RIIPAEISKEMKDSYIDYAMSVIAGRALPDVRDGLKPVHRRILYSMNEL 56

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD
Sbjct: 57  NLTPDKPYRKSARIVGDVLGKYHPHGDSAVYLAMVRMAQDFSTRGLLVDGHGNFGSVDGD 116

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA+M++++  +L+ +D++ VDF   ++E   EP V P++FPNLL NG++GIA
Sbjct: 117 SPAAMRYTEAKMSKLSLELLRDIDKETVDFGPNFDESLKEPTVLPARFPNLLVNGSNGIA 176

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMATSIP HN+ E  +A + LIDNP+  +++L++YI GPDFPTG  I+  ++SI E+YR
Sbjct: 177 VGMATSIPPHNLGETIDATVHLIDNPDCDVDELMQYIQGPDFPTGA-IIMGKDSIAEAYR 235

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  +VR+R  +EE+ +G   IVVTEIPYQV K++L+E+IAEL+  KRI  + D+RDE
Sbjct: 236 TGRGKVKVRSRAEIEELPKGKQQIVVTEIPYQVNKAKLVERIAELVKDKRIEGISDLRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R ++ ++++ +++  S +E  F + M  L    VP+++ L  IL  +
Sbjct: 296 SNRNGMRIVIELKRDVNANIVLNNLYKHSQLEDTFSIIMLSLV-NGVPRILNLKQILHYY 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRF 421
           + H+++V+ RR+ F +     R  IL+GL IA   IDE+I++IR+    +      + +F
Sbjct: 355 VEHQKDVVTRRTKFELNKAQARAHILEGLRIALDYIDEVISLIRSSANTQIAKSGLMDKF 414

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q  AIL++RL+ L  LE  ++++E + L+ + E ++S+L   +     I  EI E
Sbjct: 415 KLSEIQAQAILDMRLQKLTGLEREKVEAEYNELMKKIEYLESILADEQLLLGVIKDEILE 474

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           +K+ +S +     R        +      +  +       +        +S +     +S
Sbjct: 475 IKKKYSDARRTEIRHAEGEIDIKDLIDDEEITITLTHFGYIKRLPLDTYKSQRRGGRGIS 534

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
           AL  +E D +K  +   T +R+L  +  G+ + L A  +  G+   +  AI  L+ L  N
Sbjct: 535 ALTVREEDFVKHLITTRTHNRLLFFTNRGRVFRLDAFEVPEGKRQAKGTAIVNLLQLGPN 594

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I T        D    LL+ + KG     + SE     + G   + +  ++++  V  
Sbjct: 595 EKIATLIEVDGRADDDSYLLLATKKGIVKKTKRSEFKNINKSGLIAIGLRDDDELIDVKT 654

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
             G+  V +V  N   + F    I  M R   GV+  +  +G     +     EG   + 
Sbjct: 655 TNGEKDVLLVTSNGMSIRFDEKDIRPMGRTAMGVKGITLSEGDKVVSMSLS-DEGEDLLV 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   Y +  +        R G G        ++G+ + +
Sbjct: 714 VSQNGYGKRTDINEYRSQIRAGKGIKTYNMSEKTGEIVGA 753



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 6/192 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++           +   L A+  ++ D L      +    +LL++++G +      ++  
Sbjct: 621 IVKKTKRSEFKNINKSGLIAIGLRDDDELIDVKTTNGEKDVLLVTSNGMSIRFDEKDIRP 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                  +   I L+    +V+  + D    LLVVS  G     + +E  +  R GK   
Sbjct: 681 MGRTAMGV-KGITLSEGDKVVSMSLSDEGEDLLVVSQNGYGKRTDINEYRSQIRAGKGIK 739

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
              +   + E +   +    D + ++  +  L+   +D I    R   GV+L    D   
Sbjct: 740 TYNMSEKTGEIVGATMVNNEDELMLINSDGVLIRLRVDDISVFGRITSGVKLMKTDDEVN 799

Query: 698 SDVICFKICEGL 709
              I     E  
Sbjct: 800 VVSIAKIDTEEE 811


>gi|289577275|ref|YP_003475902.1| DNA gyrase subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289526988|gb|ADD01340.1| DNA gyrase, A subunit [Thermoanaerobacter italicus Ab9]
          Length = 805

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/751 (32%), Positives = 402/751 (53%), Gaps = 14/751 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     
Sbjct: 1   MSEDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RY
Sbjct: 61  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+I
Sbjct: 121 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGG+I+  R+ I E+Y  GRG   
Sbjct: 181 PPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVIL-GRDGIKETYETGRGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   
Sbjct: 240 VRAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMK 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    + ++P +++  ++M + M+  F   M  L     P+++ L  I+++++ H+ +V
Sbjct: 299 VVIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYVDHQADV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F L+E Q 
Sbjct: 358 VTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K+ ++ 
Sbjct: 418 QAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILADERKVLEIIKKELLEIKDKYAT 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                                    +       +        ++ K     +  +  +E 
Sbjct: 478 PRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTRED 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++      T DR+L  +  GK Y+L   ++       +  AI  LI +   + +    
Sbjct: 538 DFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVI 597

Query: 607 VYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
               +     +++ + KG        E  +  R G   + +   +++       G+  + 
Sbjct: 598 PLKKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEENDELINTKLTNGEREII 657

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +       + F+   I  M R  KGV   S ++     V    +  G   +    + + +
Sbjct: 658 IGTAKGYAIRFNEKDIRPMGRVAKGVIAISLREDDEV-VEMDLVHPGSEILVVTEKGFGK 716

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +     L  R G G +  +   ++GK +S
Sbjct: 717 RTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 747



 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A      ++       + +   I L  + ++V   +     ++LVV+ KG     
Sbjct: 660 TAKGYAIRFNEKDIRPMGRVAKGVI-AISLREDDEVVEMDLVHPGSEILVVTEKGFGKRT 718

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS 682
           +  E    TR GK  + +   EK   +  +  V   D   ++  N  L+   + +I +M 
Sbjct: 719 DLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSEISKMH 778

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R  +GV L    DG           E 
Sbjct: 779 RDTRGVTLMKLDDGDRVVSTARIENEE 805



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 62/193 (32%), Gaps = 18/193 (9%)

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           ++   IA  + E  E+ +     G R               ++ +               
Sbjct: 629 KRNGIIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKDIRPMG----------- 677

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  +  + A+  +E D +      H    IL+++  G                G+ 
Sbjct: 678 -----RVAKGVIAISLREDDEVVEMDLVHPGSEILVVTEKGFGKRTDLEEYRLQTRAGKG 732

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           I  +        +V+    +   + +++S+ G    ++ SEI    R  +G T +K+   
Sbjct: 733 IIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDG 792

Query: 648 EKMKLVVKVTGDH 660
           +++    ++  + 
Sbjct: 793 DRVVSTARIENEE 805


>gi|119897357|ref|YP_932570.1| DNA gyrase subunit A [Azoarcus sp. BH72]
 gi|119669770|emb|CAL93683.1| DNA topoisomerase (ATP-hydrolysing) [Azoarcus sp. BH72]
          Length = 877

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/797 (30%), Positives = 396/797 (49%), Gaps = 64/797 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEKEPLILPARIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+++PE  +E L+E +  PDFPT G ++     + E YR GRG  
Sbjct: 182 IPPHNLGEVVDACLKLLEDPETDLEALIEIVKAPDFPTAG-LIYGLHGVHEGYRTGRGRV 240

Query: 251 RVRARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +RAR  +E +G+      I+V E+PYQV K  L+E+IAEL+  K++  + +IRDES + 
Sbjct: 241 VMRARTHIEPIGKNSDREAIIVDELPYQVNKRTLLERIAELVNEKKVEGISEIRDESDKS 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R+  P++++ +++  + ++  F +NM  L     P+++ L  +L  +L HR
Sbjct: 301 GMRVVIELKRNEMPEVVLNNLYKHTQLQDTFGMNMVALVD-GKPRLLNLKQMLVCFLEHR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------- 415
           REV+ RR+ F ++    R  IL+GL +A  N+DEIIA+I+    P               
Sbjct: 360 REVVTRRTIFELKKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRGLMERTWRSP 419

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q  AIL LRL+ L  LE+ +I  E 
Sbjct: 420 LVEEMLSRALADSYRPEGLDPEFGFSAQGYKLSDAQAQAILELRLQRLTGLEQDKIVGEY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++     +  +L   ++    I  E+  ++  F        RR+       +      
Sbjct: 480 REVMDLITDLLDILARPERITAIIVEELTAIRNQFGDP-----RRSEIV---LSTAEINI 531

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  E + V +S+ G+ +          +       A   K+ D +     A+T D +
Sbjct: 532 EDLITPEDMVVTLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTV 591

Query: 564 LLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+AY L    +        G+ I  L  L   + I        +D    + + +
Sbjct: 592 LCFSSRGRAYWLKVYEVPEGTRNSRGKPIVNLFPLIEGEKITAVLPVQTFDEEHFVFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
           S+G       +      + G   + +   + +  V    G+  V +  +  K + F+   
Sbjct: 652 SEGTVKKTALTAFANPRKAGIIAVNLDDGDHLIGVAITDGECDVMLFSDAGKAVRFAESD 711

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR  + +DG     +     E  + + +    Y +           RG  
Sbjct: 712 VRPMGREARGVRGMTLEDGQRVIAMLVAKGETQSVLTATENGYGKRTPVAEYTRHGRGTK 771

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK + +
Sbjct: 772 GMIAIQTSDRNGKLVGA 788



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 71/221 (32%), Gaps = 10/221 (4%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           +   ++  +        +               + A++  +GD L           ++L 
Sbjct: 639 QTFDEEHFVFMATSEGTVKKTALTAFANPRKAGIIAVNLDDGDHLIGVAITDGECDVMLF 698

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFI 625
           S  GKA      ++         ++ +  L   Q ++   V    T  +L  +  G    
Sbjct: 699 SDAGKAVRFAESDVRPMGREARGVRGM-TLEDGQRVIAMLVAKGETQSVLTATENGYGKR 757

Query: 626 VEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM 681
              +E   + R  K  + + + ++   +   V V   D V ++     L+   +  I E+
Sbjct: 758 TPVAEYTRHGRGTKGMIAIQTSDRNGKLVGAVLVDPTDEVMLISTGAVLIRTKVQDIREL 817

Query: 682 SRG-KGVRLQSYKDGGI---SDVICFKICEGLTWIDSAGRS 718
            R  +GV L +  +G      + +     E    ++     
Sbjct: 818 GRATQGVTLINLDEGTYLAGIEKVAESGAEADELVEGGEEG 858


>gi|52078498|ref|YP_077289.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580]
 gi|52783862|ref|YP_089691.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580]
 gi|319648525|ref|ZP_08002741.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
 gi|52001709|gb|AAU21651.1| DNA gyrase (subunit A) [Bacillus licheniformis ATCC 14580]
 gi|52346364|gb|AAU38998.1| GyrA [Bacillus licheniformis ATCC 14580]
 gi|317389604|gb|EFV70415.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
          Length = 822

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 419/764 (54%), Gaps = 31/764 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  +      V+ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQHKP---QVQEVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+  NP+I++ +L+E I GPDFPT G ++  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAG-LILGRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 297 DRNGMRIVIELRRDANANVLLNNLYKQTALQTSFGINLLALVD-GQPKVLSLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR++F ++  + R  IL+GL +A  ++DE+I++IRN       K  ++ +FS
Sbjct: 356 DHQKVVIRRRTAFELRKAEARAHILEGLRVALDHLDEVISLIRNSQTAEIAKNGLIEKFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVELIAELKAILADEEKVLEIIREELTEV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +I +E I V +++ G+I+          K
Sbjct: 476 KERFNDE-----RRTEIV--TSGLETIEDEDLITRENIVVTLTHNGYIKRLPSSTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +       +   I  
Sbjct: 529 RGGKGIQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +D    L   +  G +     S+       G   L +  E++
Sbjct: 589 LLEVEKGEWINAIIPVGEFDDESYLFFTTKHGISKRTPLSQFANIRNNGLIALSLRDEDE 648

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G+  + +  +N  L+ F    + +M R   GV+  +  D  +   +   + E
Sbjct: 649 LIAVRLTDGNKQIIIGTKNGLLIRFPETDVRQMGRTAAGVKGINLTDDDVVVGMEI-LEE 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +    + Y +        +  RGG G    K    +G  +
Sbjct: 708 DSHVLIVTEKGYGKLTPASEYRVQSRGGKGLKTCKITENNGSLV 751



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 12/222 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E      A +     + E      +  G  +              L AL  ++ D L 
Sbjct: 591 EVEKGEWINAIIPVGEFDDESYLFFTTKHGISKRTPLSQFANIRNNGLIALSLRDEDELI 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                    +I++ + +G     P  ++        A    I+L  +  +V   + +   
Sbjct: 651 AVRLTDGNKQIIIGTKNGLLIRFPETDVRQMGRTA-AGVKGINLTDDDVVVGMEILEEDS 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENR 668
            +L+V+ KG   +   SE    +R GK         +   +  V   TG+  + ++  + 
Sbjct: 710 HVLIVTEKGYGKLTPASEYRVQSRGGKGLKTCKITENNGSLVTVKATTGEEDLMIITASG 769

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            ++   I  I    R  +GVRL    +      +     +  
Sbjct: 770 VIIRMDIKDISTTGRVTQGVRLIRLGEQEHVATVALVEKDEE 811


>gi|260888797|ref|ZP_05900060.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|330839812|ref|YP_004414392.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|260861433|gb|EEX75933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|329747576|gb|AEC00933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
          Length = 809

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/752 (33%), Positives = 388/752 (51%), Gaps = 13/752 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  +  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+  G 
Sbjct: 2   DFGEGKIVPVNLASEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSGK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGD AAA R
Sbjct: 62  PYKKSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM++VAEL+LQ +D++ VDF   Y+E   EP V P+KFP LLANGT+GIAVGMAT+
Sbjct: 122 YTEVRMSKVAELMLQDIDKETVDFAPNYDESLKEPTVLPAKFPQLLANGTAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +  L LID P+ ++E+L+  I GPDFPT G ++   E I ++Y  GRG  
Sbjct: 182 IPPHNMREVIDGTLMLIDRPDATVEELMTVIKGPDFPTAG-LILGTEGIRQAYTTGRGVI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RAR  +E    G   I+VTE+PYQV K+RL+EKIAEL+  K I  +  + DES     
Sbjct: 241 KLRARVHIETTSSGRSRIIVTELPYQVNKARLVEKIAELVRDKAIEGITALNDESDRSGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  + ++++  ++  + ++  F + M  L     P+V+ L  +L  ++ H+++
Sbjct: 301 RIVIDVRRDANANVILNQLYKHTQLQDSFGVIMLALVD-GSPRVLTLKEVLHYYIKHQQD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ + +   + R  IL+GL IA  ++D +I  IR        +  ++  F L+E Q
Sbjct: 360 VITRRTKYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARERLMEDFKLSEKQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+LRL+ L  LE  +I+ E   +L   + + S+L    +    I  E+  V+E + 
Sbjct: 420 AQAILDLRLQRLTGLEREKIEEEYQEVLKMIDWLKSVLADEGKIDKIIKDELLAVREKYG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                     T         A     +       +        R  K   V ++ +  KE
Sbjct: 480 DERRTEITIDTSEINVEDLIAQEDVVITLTHNNYIKRMPLDTYRRQKRGGVGVTGMGTKE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  L   T   IL  +  G+ Y L A  +       +  AI  L+ L   + I   
Sbjct: 540 ADFVENILVTTTHHTILFFTNRGRVYCLKAYEINEASRQAKGTAIINLLQLESEEKITAV 599

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                +     L + + KG       SE  +  R G   + +  ++ +  V    G+ HV
Sbjct: 600 IQVKEFLPERYLFMATKKGIVKKTSLSEFQSIRRGGLNAINLDEDDDLIGVKFTDGEKHV 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +       + F+ D +  M R  +GV+  + K G +  V    +      +      Y 
Sbjct: 660 ILGTAGGMAVAFAEDDVRSMGRTARGVKGINLKAGDVV-VGMDNLARNAEVLTITAEGYG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        L  RGG G +  K   ++G  + 
Sbjct: 719 KRTATSEYRLQTRGGKGLINMKVTEKTGAVIG 750



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 5/143 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           ++ ++L T G      A + +   G        I+L     +V         ++L ++++
Sbjct: 656 EKHVILGTAGGMAVAFAEDDVRSMGRTARGVKGINLKAGDVVVGMDNLARNAEVLTITAE 715

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV----VKVTGDHVAVVGENRKLLIFSID 676
           G       SE    TR GK  + +   EK   V    V   G  + ++  +  ++   +D
Sbjct: 716 GYGKRTATSEYRLQTRGGKGLINMKVTEKTGAVIGLKVVRPGQELILITTDGIVIRTKVD 775

Query: 677 QIPEMSR-GKGVRLQSYKDGGIS 698
           +I  +SR  +GV++    +G  +
Sbjct: 776 EISVISRNTQGVKVVRLGEGDKA 798



 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 2/90 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  +        ++   V     +L+++++ G   
Sbjct: 711 TITAEGYGKRTATSEYRLQTRGGKGLINMKVTEKTGAVIGLKVVRPGQELILITTDGIVI 770

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKL 652
             +  EI   +R   G   +++   +K   
Sbjct: 771 RTKVDEISVISRNTQGVKVVRLGEGDKAAS 800


>gi|297543508|ref|YP_003675810.1| DNA gyrase subunit A [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296841283|gb|ADH59799.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 805

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/751 (32%), Positives = 402/751 (53%), Gaps = 14/751 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     
Sbjct: 1   MSEDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RY
Sbjct: 61  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+I
Sbjct: 121 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGG+I+  R+ I E+Y  GRG   
Sbjct: 181 PPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVIL-GRDGIKETYETGRGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   
Sbjct: 240 VRAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMK 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    + ++P +++  ++M + M+  F   M  L     P+++ L  I+++++ H+ +V
Sbjct: 299 VVIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYVDHQADV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F L+E Q 
Sbjct: 358 VTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K+ ++ 
Sbjct: 418 QAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILADERKVLEIIKKELLEIKDKYAT 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                                    +       +        ++ K     +  +  +E 
Sbjct: 478 PRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTRED 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++      T DR+L  +  GK Y+L   ++       +  AI  LI +   + +    
Sbjct: 538 DFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIGQGEKVTAVI 597

Query: 607 VYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
               +     +++ + KG        E  +  R G   + +   +++       G+  + 
Sbjct: 598 PLKKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEENDELINTKLTNGEREII 657

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +       + F+   I  M R  KGV   S ++     V    +  G   +    + + +
Sbjct: 658 IGTAKGYAIRFNEKDIRPMGRVAKGVIAISLREDDEV-VEMDLVHPGSEILVVTEKGFGK 716

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +     L  R G G +  +   ++GK +S
Sbjct: 717 RTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 747



 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A      ++       + +   I L  + ++V   +     ++LVV+ KG     
Sbjct: 660 TAKGYAIRFNEKDIRPMGRVAKGVI-AISLREDDEVVEMDLVHPGSEILVVTEKGFGKRT 718

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS 682
           +  E    TR GK  + +   EK   +  +  V   D   ++  N  L+   + +I +M 
Sbjct: 719 DLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSEISKMH 778

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R  +GV L    DG           E 
Sbjct: 779 RDTRGVTLMKLDDGDRVVSTARIENEE 805



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 62/193 (32%), Gaps = 18/193 (9%)

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           ++   IA  + E  E+ +     G R               ++ +               
Sbjct: 629 KRNGIIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKDIRPMG----------- 677

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  +  + A+  +E D +      H    IL+++  G                G+ 
Sbjct: 678 -----RVAKGVIAISLREDDEVVEMDLVHPGSEILVVTEKGFGKRTDLEEYRLQTRAGKG 732

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           I  +        +V+    +   + +++S+ G    ++ SEI    R  +G T +K+   
Sbjct: 733 IIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDG 792

Query: 648 EKMKLVVKVTGDH 660
           +++    ++  + 
Sbjct: 793 DRVVSTARIENEE 805


>gi|228994213|ref|ZP_04154113.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
 gi|228765665|gb|EEM14319.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
          Length = 822

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 422/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQEQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +L+ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQTLYYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQQVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++++  + +        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLEVDKGEWVNAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 8/183 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   ++      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQKD 810

Query: 708 GLT 710
              
Sbjct: 811 EEE 813


>gi|228995402|ref|ZP_04155074.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
 gi|229003016|ref|ZP_04160875.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
 gi|228758244|gb|EEM07430.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
 gi|228764355|gb|EEM13230.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
          Length = 821

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 422/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQEQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +L+ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQTLYYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQQVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++++  + +        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLEVDKGEWVNAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 8/183 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   ++      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQKD 810

Query: 708 GLT 710
              
Sbjct: 811 EED 813


>gi|313902778|ref|ZP_07836175.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
 gi|313466898|gb|EFR62415.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
          Length = 810

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+ AM E G     
Sbjct: 3   EYTHGKILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILFAMREGGNTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSAR VG+V+GK HPHGD +VYD+LVR+AQ F  RYPLI G GNFG+IDGD  AA R
Sbjct: 63  PFKKSARTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++ +A  +++ +D+D VDF   ++E + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARLSPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E  +  + LID P+ +   L++ I GPDFPTGGIIV  RE I ++Y  GRG  
Sbjct: 183 IPPHNLREAIDGVIHLIDYPDATDRDLMKVIKGPDFPTGGIIV-GREGIRQAYTTGRGII 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   +E    G   IVVTEIPY+V KS++IEKIAEL+  +RI  + D+RDE+     
Sbjct: 242 TIRAHAQIETAASGKARIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGL 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  +P++++  ++  + M+  + +    L     P+V+ L  +L+ +L H+++
Sbjct: 302 RVVIELARGANPNVILNQLYKFTPMQVSYGIIQLALVD-GQPRVLTLKQLLRHYLDHQKD 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+   +   + R  IL+GL IA  +ID +I +IR            +  F+LTE Q
Sbjct: 361 VIVRRTRHDLAKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLMENFNLTEKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +++ E   LL E E + ++LNS K   + I  E+ E+++ F 
Sbjct: 421 AQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRAVLNSEKMVLDIIKQELGEIRDRFG 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                  RRT              + +I +E + + +++RG+I+ L   +          
Sbjct: 481 D-----DRRTKIV---AGAAEFEVEDLIAEEDVVITLTHRGYIKRLPVDTYRSQRRGGRG 532

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           ++ +  +E D +     A T + +L  +  GK Y      +        G A+  LI++ 
Sbjct: 533 ITGIQTREEDFVSQLFIATTHENLLFFTNRGKVYHRRVHEVPEASRTARGTAVVNLIEIG 592

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ +        +     LL+ + +G       +E     R G   L +   +++  V 
Sbjct: 593 QDEQVTAVIPVRDFGEDRDLLMCTRRGVVKRTALAEFGHIRRGGLIALSLDPGDELVAVQ 652

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V ++    + + F + ++  M R  +GV     ++G     +     E    +
Sbjct: 653 LTDGRGDVLLLTRQGQAIRFPVAEVRTMGRTARGVMGIRLEEGDEVVGMEVADDE-AHLL 711

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               R Y +           RGG G        R+G+   
Sbjct: 712 VITDRGYGKRTPVREFRAQGRGGKGIRAITLTARNGQVAG 751



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L AL    GD L           +LLL+  G+A   P   + +       +   I L  
Sbjct: 636 GLIALSLDPGDELVAVQLTDGRGDVLLLTRQGQAIRFPVAEVRTMGRTARGVMG-IRLEE 694

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV 656
             ++V   V D    LLV++ +G        E  A  R  KG   + +++        +V
Sbjct: 695 GDEVVGMEVADDEAHLLVITDRGYGKRTPVREFRAQGRGGKGIRAITLTARNGQVAGFEV 754

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
              G+ V ++ +   +L   +DQ+    R  +GV +   + G     +      G 
Sbjct: 755 VRPGEEVMLISQGGIVLRVPVDQVSIQGRAAQGVTVMRLEPGDRVSAVATVAQRGD 810


>gi|317120856|ref|YP_004100859.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
 gi|315590836|gb|ADU50132.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
          Length = 810

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 399/760 (52%), Gaps = 29/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G     
Sbjct: 3   EYTHGKILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILYAMREGGNTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSAR VG+V+GK HPHGD +VYD+LVR+AQ F  RYPLI G GNFG+IDGD  AA R
Sbjct: 63  PFKKSARTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++ +A  +++ +D+D VDF   ++E + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARLSPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E  +  + LID+P+     L++ I GPDFPTGGIIV  RE I ++Y  GRG  
Sbjct: 183 IPPHNLREAIDGVIHLIDHPDAGDRDLMKVIKGPDFPTGGIIV-GREGIRQAYTTGRGII 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   +E    G   IVVTEIPY+V KS++IEKIAEL+  +RI  + D+RDE+     
Sbjct: 242 TIRAHAQIETSASGKTRIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGL 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  +P++++  ++  + M+  + + +  L     P+V+ L  +L+ +L H+++
Sbjct: 302 RVVIELARGANPNVILNQLYKFTPMQVSYGIILLALVD-GQPRVLTLKQLLRHYLDHQKD 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+   ++  + R  IL+GL IA  +ID +I +IR            +  FSLTE Q
Sbjct: 361 VILRRTRHDLEKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLMESFSLTEKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +++ E   LL E E + ++LNS K   + I  E+ E+++ F 
Sbjct: 421 AQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRAVLNSEKMVLDIIKQELAEIRDRFG 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                  RRT              + +I +E + + +++RG+I+ +  ++          
Sbjct: 481 D-----DRRTKIV---SGAADFEVEDLIAEEDVVITLTHRGYIKRMPVNTYRSQRRGGRG 532

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           ++ +  +E D +     A T + +L  +  GK Y      +        G A+  LI++ 
Sbjct: 533 VTGIQTREEDFVAQLFIATTHENLLFFTNRGKVYHRRVHEIPEAGRTARGTAVVNLIEIE 592

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ +        +     LL+ + +G       +E     R G   L +   +++  V 
Sbjct: 593 RDEQVTAVIPVRDFGEDRDLLMCTRRGVVKRTALAEFSHIRRGGLIALALDPGDELVAVE 652

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V VV    + + F + ++  M R  +GV      +G     +     E    +
Sbjct: 653 LTDGRGDVLVVTRLGQAIRFPVAEVRTMGRAARGVMGIRLDEGDEVVGMEVADDE-AHLL 711

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +           RGG G        R+G+   
Sbjct: 712 VITDLGFGKRTPVREFRAQGRGGKGIRAISLTARNGRVAG 751



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 6/176 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L AL    GD L           +L+++  G+A   P   + +       +   I L+ 
Sbjct: 636 GLIALALDPGDELVAVELTDGRGDVLVVTRLGQAIRFPVAEVRTMGRAARGVMG-IRLDE 694

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV--SSEEKMKLVV 654
             ++V   V D    LLV++  G        E  A  R  KG   + +   +       V
Sbjct: 695 GDEVVGMEVADDEAHLLVITDLGFGKRTPVREFRAQGRGGKGIRAISLTARNGRVAGFEV 754

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
              G+ V ++ +   +L   +DQ+    R  +GV +   + G     +     +G 
Sbjct: 755 VRPGEEVMLISQGGIVLRVPVDQVSVQGRAAQGVTVMRLEPGDRVSAVATVAHKGD 810


>gi|83647663|ref|YP_436098.1| DNA gyrase subunit A [Hahella chejuensis KCTC 2396]
 gi|83635706|gb|ABC31673.1| DNA gyrase, A subunit [Hahella chejuensis KCTC 2396]
          Length = 879

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/786 (31%), Positives = 400/786 (50%), Gaps = 48/786 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G D+  ++
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKSY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +D++ VDF   Y+  +  PVV P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMEKIAHEMLADLDKETVDFAPNYDGSEQIPVVLPTKVPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA +DN +I+I++L+E+I GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLTEVVNGCLAYLDNSDITIDELMEFIPGPDFPTAA-IINGRAGILEAYRTGRGRIYI 242

Query: 253 RARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR+ +E+  +     IV+TEIPYQV K++L+EKIAEL+  K++  + ++RDES+++   
Sbjct: 243 RARYEIEQDKKTSKETIVITEIPYQVNKAKLVEKIAELVKEKKVEGITELRDESSKEGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  + D+LM ++F L+ +ET F +NM  L     P+++ L   ++ ++ HRREV
Sbjct: 303 VVIELRRGENADVLMNNLFALTPLETVFGINMVALI-NGEPKLLNLKDCIECFVRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419
           + RR+ + ++    R  IL+G  +A  NID +IA+I+                       
Sbjct: 362 VTRRTIYELRKARERGHILEGQAVALANIDPVIAVIKASSTGAEAKERLMAQGWAPGAVT 421

Query: 420 -------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+E Q  +IL+LRL+ L  LE  +I  E  ++
Sbjct: 422 GMLERAGEDACRPDDLAPEFGLREGLYYLSEVQAQSILDLRLQKLTGLEIEKINDEYRSI 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           + +  ++  +L + ++    I  E+  V+E F          +          A     +
Sbjct: 482 IEQIAELLEILQNPERLMAVIREELEAVREEFGDVRVTEITASKRDLTIADLIAEEDMVV 541

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
                           ++ K      +A   ++ D ++  L A++ D IL  ++ GK Y 
Sbjct: 542 TLSHKGYAKTQPLEAYQAQKRGGKGKAATAIRDEDFVEKLLIANSHDTILCFTSHGKLYW 601

Query: 575 LPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEES 629
           L    +        G  I  ++ L  N+ I T            + + + +G        
Sbjct: 602 LKTYEIPQASRISRGRPIVNILPLAENERITTMLPVREYTADHYVFMATRQGTVKKTPLE 661

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
                   G   L +   + +       G   V +   + K + F+ D +  M R  +GV
Sbjct: 662 NFSRPRSSGLIALALDEGDMLIGAAITDGKKDVMLFSSSGKAIRFNEDDVRPMGRTARGV 721

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      G    V      E    + ++ + Y +        +  RGG G +  +   R+
Sbjct: 722 RGIRLAQGQTV-VSLIIPQEDAYILTASRKGYGKRTAVSEFPVYGRGGQGVIAIQCSERN 780

Query: 748 GKFLSS 753
           G  +S+
Sbjct: 781 GDLVSA 786



 Score = 94.8 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 104/361 (28%), Gaps = 22/361 (6%)

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
                 +   ++ +       +   + +++   +            + +       + T 
Sbjct: 512 EFGDVRVTEITASKRDLTIADLIAEEDMVVTLSHKGYAKTQPLEAYQAQKRGGKGKAATA 571

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            + +  +   L  +    +  +       L   +  +    S   +   I   +      
Sbjct: 572 IRDEDFVEKLL--IANSHDTILCFTSHGKLYWLKTYEIPQASRISRGRPIVNIL------ 623

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
                    R TT   V            +     TV  +        +  S  L AL  
Sbjct: 624 ---PLAENERITTMLPVRE--YTADHYVFMATRQGTVKKTPLENFSRPR--SSGLIALAL 676

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            EGD L  A        ++L S+ GKA      ++         ++  I L   Q +V+ 
Sbjct: 677 DEGDMLIGAAITDGKKDVMLFSSSGKAIRFNEDDVRPMGRTARGVRG-IRLAQGQTVVSL 735

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHV 661
            +      +L  S KG       SE     R G+  + +     + + +  V  ++GD +
Sbjct: 736 IIPQEDAYILTASRKGYGKRTAVSEFPVYGRGGQGVIAIQCSERNGDLVSAVQVISGDQL 795

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSY 719
            ++     L+    D++  + R  +GVRL    +   +  V      E            
Sbjct: 796 MLISNQGTLVRTRSDEVSIVGRNTQGVRLIRLSESEDLVGVERIAEPEEDESDFQGEEGE 855

Query: 720 N 720
            
Sbjct: 856 G 856


>gi|229159055|ref|ZP_04287111.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
 gi|228624474|gb|EEK81245.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
          Length = 823

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|52145203|ref|YP_081625.1| DNA gyrase subunit A [Bacillus cereus E33L]
 gi|51978672|gb|AAU20222.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus cereus E33L]
          Length = 823

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|319651105|ref|ZP_08005239.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
 gi|317397275|gb|EFV77979.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
          Length = 841

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/765 (32%), Positives = 418/765 (54%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++       VK +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G
Sbjct: 1   MADTP---NSQVKEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD+
Sbjct: 58  MHSDKPFKKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +L+ +++D +D++D Y+  + EPVV P++FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARMSKISMELLRDINKDTIDYQDNYDGAEKEPVVMPARFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+   P++++++L+E I GPDFPT G ++  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDGVLAISQEPDLTVQELMEIIPGPDFPTAG-LILGRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+V EIPYQV K++LIEKIAEL+  KRI  + D+RDES
Sbjct: 237 GRGSITLRAKVEIEQKSNGKEVIIVNEIPYQVNKAKLIEKIAELVRDKRIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    +  + ++L+ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 297 DRNGMRIVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVD-GQPKVLNLKQCLQHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H++ V+ RR+ F ++  + R  IL+GL IA  ++DE+I +IR+       +  ++++F+
Sbjct: 356 DHQKVVIRRRTEFELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTDIAREGLMTKFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+A   ++ ++L   ++    I  E+ EV
Sbjct: 416 LSEKQAQAILDMRLQRLTGLEREKIEDEYSSLVALIAELKAILADEEKVLEIIREELTEV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+      +RRT     +   +    + +I +E I + ++++G+I+          K
Sbjct: 476 KERFND-----KRRTEIV--AGGIEQIEDEDLIPRENIVLTLTHKGYIKRLPVSTYRAQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  +   T D IL  +  GK Y      +       +   I  
Sbjct: 529 RGGRGIQGMGTNEDDFVEHLITTSTHDTILFFTNKGKVYRAKGYEIPEFSRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++ ++ +        +     L   + +G +     S        G   L +  +++
Sbjct: 589 LLGVDKDEWVNAIIPVEEFADDWFLFFTTKQGISKRSPLSSFANIRNNGLIALNLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +   +  L+ F  + +  M R   GV+  S   G    V    + +
Sbjct: 649 LISVRLTDGSKEIIIGTSHGMLIRFPEEDVRSMGRTATGVKGISLSAGDEV-VGMEVLED 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        +  RGG G        ++G  +S
Sbjct: 708 DSQILIVTKNGYGKRTPAGEYRVQGRGGKGIKTCNITDKNGSLVS 752



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 6/176 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL+ +E D L        +  I++ ++ G     P  ++ S       +   
Sbjct: 632 NIRNNGLIALNLREDDELISVRLTDGSKEIIIGTSHGMLIRFPEEDVRSMGRTATGV-KG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L+   ++V   V +   ++L+V+  G        E     R GK      +   +   
Sbjct: 691 ISLSAGDEVVGMEVLEDDSQILIVTKNGYGKRTPAGEYRVQGRGGKGIKTCNITDKNGSL 750

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           + +      + V ++     L+  +++ I  M R  +GVRL    +     V    
Sbjct: 751 VSMKAVTGEEDVMLITTGGVLIRMAVNDISTMGRNTQGVRLIRINEDADEAVSTVA 806


>gi|33469290|gb|AAQ19682.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 894

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 403/762 (52%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   DLPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+MT++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L L  NP+++I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++RAR  +EE G G   IVVT+IPYQV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRARAEIEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  + ++++ +++  + ++T F +NM  L     P+++ L   L E+L H++
Sbjct: 302 VRVVIDVRKDANANVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKQALVEYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  +        +  RF L+E 
Sbjct: 361 TVVRRRTEYNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++ +L   +     +  E+ ++KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIENEYNELLGYISELEEILADDEVLLQLVRDELTDIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQHRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++++ I T        D    L+  +  G       S      + GK  +    ++++  
Sbjct: 594 DNDETISTMIAVRNLEDEDSYLVFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V    G+   ++   +  L+ F+   +  + R   GVR  S ++  +   +     +   
Sbjct: 654 VRLTDGNQDILIGTSHASLIRFAETSLRPLGRTAAGVRGISLREDDVVVGLDVAHADSED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G    K   R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNIV 755



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 9/119 (7%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVV 664
           DS  ++LVV+  G       SE   + R GK      +   +   + +      + + +V
Sbjct: 710 DSEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNIVCITTVNGEEDLMIV 769

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG----ISDVICFKICEGLTWIDSAGRS 718
             +  ++   ++ I +  R  +GVRL    D      ++ VI     E  T        
Sbjct: 770 TNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEAAQTENG 828



 Score = 45.9 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA + D +L+++ +G     P          G+ I+       N +IV     +    L+
Sbjct: 708 HADSEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNIVCITTVNGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV---TGDHV---AVVGEN 667
           +V++ G    +E  +I  N R   G   +K+  ++ +  V KV   T D     A   EN
Sbjct: 768 IVTNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEAAQTEN 827

Query: 668 R 668
            
Sbjct: 828 G 828


>gi|56475927|ref|YP_157516.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1]
 gi|56311970|emb|CAI06615.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1]
          Length = 876

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/796 (30%), Positives = 387/796 (48%), Gaps = 63/796 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TPFAKETLPISLEDEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEREPLILPAKIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L++NP+  IE+L+  +  PDFPT   ++     + + YR GRG  
Sbjct: 182 IPPHNLGEVLDACLKLLENPDTDIEELIALVKAPDFPTAA-LIYGLSGVHDGYRTGRGRV 240

Query: 251 RVRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   E++       I+V E+PYQV K  L+E+IAEL+  K+I  + +IRDES +  
Sbjct: 241 VMRARTHFEDLEKGNRQAIIVDELPYQVNKRTLLERIAELVNEKKIEGISEIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R+  P++++ ++F  + ++  F +NM  L     P+ + L  +L  +L+HRR
Sbjct: 301 MRVVIELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVD-GKPRTLNLKQMLDCFLSHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII-----------------AIIRNEDK 412
           EV+ RR+ F ++    R  IL+GL +A  N+DEII                     +   
Sbjct: 360 EVITRRTVFELRKARERGHILEGLAVALSNVDEIIALIKAAPAPADAKRGLMERTWHSAL 419

Query: 413 PKPV--------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
            + +                        + L++ Q  AIL LRL+ L  LE+ +I +E  
Sbjct: 420 VEEMLARALAASYRPDSLAPEFGLSAQGYGLSDAQAQAILELRLQRLTGLEQDKIVTEYR 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++     +  +L +  +    I  E+  ++  F        RR+              +
Sbjct: 480 EVMDVITDLLDILANPPRITAIIVEELGAIRHQFDDP-----RRSEIV---LNTAEINIE 531

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+ +                  A   K+ D +     A+T D IL
Sbjct: 532 DLIAPEDMVVTLSHAGYFKRQPLTDYRAQRRGGRGKQATGMKDDDFIDRLFVANTHDYIL 591

Query: 565 LLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S+ G+ Y L    +        G  I  L  L   + I        +D    + + ++
Sbjct: 592 CFSSRGRVYWLKVYEVPEGTRNSRGRPIVNLFPLMEGEKINAVLPVQAFDDDHFVFMATA 651

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
           +G       +      + G     +   +++  V    G+  V +  +  K + F    +
Sbjct: 652 EGTVKKTALTAFSNPRKAGIIAANLDDGDRLIGVAITDGNSDVMLFSDAGKAVRFPEGDV 711

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             M R  +GVR  + ++G     +     E L+ + +    Y +           RG  G
Sbjct: 712 RPMGREARGVRGMNLEEGQRVIAMLVAKDEELSVLTATENGYGKRTPVAEYTRHGRGTKG 771

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK + +
Sbjct: 772 MIAIQTSDRNGKLVGA 787



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 7/179 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A +  +GD L           ++L S  GKA   P G++  
Sbjct: 654 TVKKTALTAFSNPRKAGIIAANLDDGDRLIGVAITDGNSDVMLFSDAGKAVRFPEGDVRP 713

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                  ++ + +L   Q ++   V  D    +L  +  G       +E   + R  K  
Sbjct: 714 MGREARGVRGM-NLEEGQRVIAMLVAKDEELSVLTATENGYGKRTPVAEYTRHGRGTKGM 772

Query: 642 LKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           + + + ++   +     V   D V ++     L+   +  I E+ R  +GV L +  +G
Sbjct: 773 IAIQTSDRNGKLVGACLVEESDEVMLISTGGVLIRTRVQDIRELGRATQGVTLINLDEG 831



 Score = 42.5 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G     P           + +  +   + N  +V A + + + +++++S+ G     
Sbjct: 749 TENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRNGKLVGACLVEESDEVMLISTGGVLIRT 808

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
              +I    R   G T + +     +  + KV    V
Sbjct: 809 RVQDIRELGRATQGVTLINLDEGTSLAGIEKVAESEV 845


>gi|229094605|ref|ZP_04225672.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
 gi|300118804|ref|ZP_07056524.1| DNA gyrase subunit A [Bacillus cereus SJ1]
 gi|228688852|gb|EEL42683.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
 gi|298723772|gb|EFI64494.1| DNA gyrase subunit A [Bacillus cereus SJ1]
          Length = 823

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|307265428|ref|ZP_07546984.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919542|gb|EFN49760.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 807

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/757 (32%), Positives = 402/757 (53%), Gaps = 18/757 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G
Sbjct: 1   MSEE----KEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD 
Sbjct: 57  LTPDKPYKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAV
Sbjct: 117 PAAMRYTEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGGII+  R+ I E+Y  
Sbjct: 177 GMATNIPPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIIL-GRDGIKETYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES
Sbjct: 236 GRGKIVVRAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R ++P +++  ++M + M+  F   M  L     P+++ L  I+++++
Sbjct: 295 DRNGMKIVIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYV 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F 
Sbjct: 354 DHQADVVTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AI+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+
Sbjct: 414 LSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEI 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ ++                          +       +        ++ K     +  
Sbjct: 474 KDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           +  +E D ++      T DR+L  +  GK Y+L   ++       +  AI  LI +   +
Sbjct: 534 ISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGE 593

Query: 601 DIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +         +    +++ + KG        E  +  R G   + +   +++  V    
Sbjct: 594 KVTAVIPLKKSEDIKYIVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTN 653

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G+  + +       + F+   I  M R  KGV   S ++     V    +      +   
Sbjct: 654 GEREIIIGTARGYAIRFNEKDIRPMGRVAKGVIAISLREDDEV-VEMDLVHPNSEILVVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + +  +     L  R G G +  +   ++GK +S
Sbjct: 713 ENGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 749



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A      ++       + +   I L  + ++V   +     ++LVV+  G     
Sbjct: 662 TARGYAIRFNEKDIRPMGRVAKGVI-AISLREDDEVVEMDLVHPNSEILVVTENGFGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS 682
           +  E    TR GK  + +   EK   +  +  V   D   ++  N  L+   +  I +M 
Sbjct: 721 DLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMH 780

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R  +GV L    DG           E 
Sbjct: 781 RDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 54/140 (38%), Gaps = 2/140 (1%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +  N   IR +   +  + A+  +E D +      H    IL+++ +G            
Sbjct: 668 IRFNEKDIRPMGRVAKGVIAISLREDDEVVEMDLVHPNSEILVVTENGFGKRTDLEEYRL 727

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKT 640
               G+ I  +        +V+    +   + +++S+ G    ++ S+I    R  +G T
Sbjct: 728 QTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMHRDTRGVT 787

Query: 641 FLKVSSEEKMKLVVKVTGDH 660
            +K+   +++    ++  + 
Sbjct: 788 LMKLDDGDRVVSTARIENEE 807


>gi|326390354|ref|ZP_08211913.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
 gi|325993631|gb|EGD52064.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
          Length = 807

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/757 (32%), Positives = 401/757 (52%), Gaps = 18/757 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G
Sbjct: 1   MSEE----KEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD 
Sbjct: 57  LTPDKPYKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAV
Sbjct: 117 PAAMRYTEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGGII+  R+ I E+Y  
Sbjct: 177 GMATNIPPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIIL-GRDGIKETYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES
Sbjct: 236 GRGKIVVRAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R ++P +++  ++M + M+  F   M  L     P+++ L  I+++++
Sbjct: 295 DRNGMKIVIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYV 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F 
Sbjct: 354 DHQADVVTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AI+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+
Sbjct: 414 LSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEI 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ ++                          +       +        ++ K     +  
Sbjct: 474 KDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           +  +E D ++      T DR+L  +  GK Y+L   ++       +  AI  LI +   +
Sbjct: 534 ISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGE 593

Query: 601 DIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +         +    +++ + KG        E  +  R G   + +   +++  V    
Sbjct: 594 KVTAVIPLKKSEDIKYIVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTN 653

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G+  + +       + F    I  M R  KGV   S ++     V    +      +   
Sbjct: 654 GEREIIIGTARGYAIRFDEKDIRPMGRVAKGVIAISLREDDEV-VEMDLVHPNSEILVVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + +  +     L  R G G +  +   ++GK +S
Sbjct: 713 ENGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 749



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A      ++       + +   I L  + ++V   +     ++LVV+  G     
Sbjct: 662 TARGYAIRFDEKDIRPMGRVAKGVI-AISLREDDEVVEMDLVHPNSEILVVTENGFGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS 682
           +  E    TR GK  + +   EK   +  +  V   D   ++  N  L+   +  I +M 
Sbjct: 721 DLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMH 780

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R  +GV L    DG           E 
Sbjct: 781 RDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+  +E D +      H    IL+++ +G                G+ I  +    
Sbjct: 683 KGVIAISLREDDEVVEMDLVHPNSEILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE 742

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVK 655
               +V+    +   + +++S+ G    ++ S+I    R  +G T +K+   +++    +
Sbjct: 743 KTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTAR 802

Query: 656 VTGDH 660
           +  + 
Sbjct: 803 IENEE 807


>gi|229164445|ref|ZP_04292373.1| DNA gyrase subunit A [Bacillus cereus R309803]
 gi|228619050|gb|EEK75948.1| DNA gyrase subunit A [Bacillus cereus R309803]
          Length = 823

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 419/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EPVV P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEERANGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K+ F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KDRFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811



 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                ++  N   +RS+  ++  + A+   E D +           +L+++ +G     P
Sbjct: 666 TSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTP 725

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                     G+ ++     + N  +V          ++++++ G    +   +I    R
Sbjct: 726 VEEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGR 785

Query: 637 K--GKTFLKVSSEEKMKLVVKVTGDH 660
              G   +++  E+++  V K   D 
Sbjct: 786 NTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|224372704|ref|YP_002607076.1| DNA gyrase subunit A [Nautilia profundicola AmH]
 gi|223588774|gb|ACM92510.1| DNA gyrase, A subunit [Nautilia profundicola AmH]
          Length = 816

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/749 (33%), Positives = 410/749 (54%), Gaps = 15/749 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  VS+   L + YL Y++S I  RA+PD+RDG KPVHRRI++AM +MG+  G+A+KKS
Sbjct: 2   QVIPVSIEETLSKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMHKMGITAGSAYKKS 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD +VY++LVR+AQPF  R PLI GQGNFG+IDGD+AAA RYTEAR
Sbjct: 62  ARIVGDVIGKYHPHGDSAVYEALVRMAQPFSMRMPLIDGQGNFGSIDGDNAAAMRYTEAR 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++AE +L+ +D+D VDF   Y+  + EPVV P++FPNLL NG+SGIAVGMAT+IP HN
Sbjct: 122 LTKIAEELLKDIDKDTVDFIPNYDGTEREPVVLPARFPNLLVNGSSGIAVGMATNIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+ +A + +IDN + ++E +L+++ GPDFPTGG I   +  I+E+Y+ GRG  ++RA+
Sbjct: 182 LEELIDALIYMIDNKDATLEDILQFVKGPDFPTGGTIF-GKSGIIEAYKTGRGSIKIRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             + E       IV+ E+P+QV K++LIEKI++L+  K +  + ++RDES  +   V+  
Sbjct: 241 HHI-EHKGNKEVIVIDELPFQVNKAKLIEKISDLVKDKVVEGISEVRDESDREGIRVVIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +    ++++ +++  + M+  F +NM  +   + P++  L  +L  ++ HR+ V+ RR
Sbjct: 300 LKKDAMSEIILNNLYKHTQMQVSFGINMLGIYD-KQPKLFNLFELLDIFIKHRKTVVIRR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           + + ++   +R  IL+GLLIA  NIDE++ II+  +     K  +++RF LT+ Q  AIL
Sbjct: 359 TIYELEEAKKRAHILEGLLIALANIDEVVEIIKKSNDTKEAKENLINRFELTDVQAQAIL 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  ++++E   L+ + E ++S+L         I  E+ E+K+ +      
Sbjct: 419 DMRLARLTSLEVEKLENEYKELMEKIEYLNSILKDENILNGVIKDELLEIKKKYPTPRLT 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                             +  +       V                   AL   E D ++
Sbjct: 479 NIEEDYDAIDIEDLIPNEEMVVTITHRGYVKRVPLKAYERQNRGGKGKKALTIYEDDFIE 538

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF---V 607
               A++ D +++++  G+ + L    +        G+AI  LI+L+ ++ I T      
Sbjct: 539 DFYVANSHDTLMIITDRGQLHWLKVYRIPEGSRTSKGKAIVNLINLDKDEKIQTIIKTED 598

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVG 665
           +D +  L   +  G       SE       G   + +   +++     V      + +V 
Sbjct: 599 FDESKSLAFFTKNGIVKRTNLSEFKNIRSTGVRAITIDEGDELVTAKIVEPGDKELFIVT 658

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           +    + F +D + EM R  +GV    +K +G           E    +  + + + +  
Sbjct: 659 KKGMAIRFPVDTVREMGRTARGVTGIRFKIEGDEVVGALALQDENQEILTLSEKGFGKRT 718

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              L  L  RGG G +  K   ++G  + 
Sbjct: 719 EANLYRLTNRGGKGVIAMKLTNKTGDLVG 747



 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 67/467 (14%), Positives = 149/467 (31%), Gaps = 29/467 (6%)

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS-LDPDLLM 326
           I +      V +  + E       A  +  L  +   +  D  + +  K+    +    +
Sbjct: 346 IFIKHRKTVVIRRTIYELEEAKKRAHILEGL--LIALANIDEVVEIIKKSNDTKEAKENL 403

Query: 327 ESIFMLSDMETR--FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
            + F L+D++ +    + +  L+   V ++      L E + +   +L   +       D
Sbjct: 404 INRFELTDVQAQAILDMRLARLTSLEVEKLENEYKELMEKIEYLNSILKDENILNGVIKD 463

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +EI K      L    I       D    +      +T      +  + L++  +   
Sbjct: 464 ELLEIKKKYPTPRL--TNIEEDYDAIDIEDLIPNEEMVVTITHRGYVKRVPLKAYERQNR 521

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-----EIREVKEIFSKSTDLGRRRTTF 499
                +   +  +    D  + +       I        ++  +      T  G+     
Sbjct: 522 GGKGKKALTIYEDDFIEDFYVANSHDTLMIITDRGQLHWLKVYRIPEGSRTSKGKAIVNL 581

Query: 500 C--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +     +  ++    ++       +  G ++              + A+   EGD L
Sbjct: 582 INLDKDEKIQTIIKTEDFDESKSLAFFTKNGIVKRTNLSEFKNIRSTGVRAITIDEGDEL 641

Query: 552 KIALHAHTTDR-ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-D 609
             A      D+ + +++  G A   P   +         +  +       ++V A    D
Sbjct: 642 VTAKIVEPGDKELFIVTKKGMAIRFPVDTVREMGRTARGVTGIRFKIEGDEVVGALALQD 701

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKV--SSEEKMKLVVKVTGDH-VAVV 664
              ++L +S KG     E +      R GK    +K+   + + +  VV    DH + V+
Sbjct: 702 ENQEILTLSEKGFGKRTEANLYRLTNRGGKGVIAMKLTNKTGD-LVGVVATEKDHDLMVL 760

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
             + K++  SID I +  +  +GVR+    DG     +     E   
Sbjct: 761 TSSGKMIRVSIDSISKTGKNTQGVRVVKLDDGDKVVSLAKTPSEKEE 807


>gi|254468943|ref|ZP_05082349.1| DNA gyrase, A subunit [beta proteobacterium KB13]
 gi|207087753|gb|EDZ65036.1| DNA gyrase, A subunit [beta proteobacterium KB13]
          Length = 855

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/788 (31%), Positives = 398/788 (50%), Gaps = 63/788 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+   +   +KKSARI
Sbjct: 10  PVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSYNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD + YD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM++
Sbjct: 70  VGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++  +L  +D+D VDF   Y+  ++EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 ISHELLADIDKDTVDFGPNYDGSENEPLIMPTRIPNLLINGSSGIAVGMATNIPPHNLTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A + ++DNP ISI++LL +I GPDFPT G I+     I E YR GRG   +RAR   
Sbjct: 190 VINACVEILDNPNISIDELLNFIPGPDFPTAG-IIHGNSGIKEGYRTGRGRVVMRARTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE  +G    I++ E+PYQV K  L+EKIAEL+  K++  + D+RDES +    V+    
Sbjct: 249 EETDKGKREAIIIDELPYQVNKKNLLEKIAELVNDKKLEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   PD+++ +++  + ++  F +NM  L     P+++ L  +L  +L HRREV+ RR+ 
Sbjct: 309 RGEIPDVVLNNLYKQTQLQDSFGINMVALID-GQPKLLNLKQVLDAFLNHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  IL+GL +A  N+DE+I II++   P                        
Sbjct: 368 FELRKARERGHILEGLAVALENVDEMIKIIKSSPSPVEAKTELMQREWKSSVVSSMLKQG 427

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L++ Q   IL +RL+ L  LE+ +I +E   ++     
Sbjct: 428 DATQYRPEGLLSVYGLKENGYKLSDIQAQEILQMRLQRLTGLEQDKIVNEYKEIMDVIAD 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LN   +  + I  E+ E+KE +        RR+   E +        + +I  + +
Sbjct: 488 LIDILNKPDRVTSIIKTELEEIKETYGD-----DRRSEIVENAED---LSIEDLIAPQDM 539

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G+         R+ K       A   K+ D +     A++ D IL  S+ G+ 
Sbjct: 540 VVTLSHTGYIKAQALDDYRAQKRGGRGKQATATKDDDFIDQMFVANSHDNILCFSSRGQV 599

Query: 573 YTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVE 627
           Y L    +        G+ I  L  L   + I              + + ++KG      
Sbjct: 600 YWLKVYEVPQGSRVSRGKPIVNLFPLMPGEKINAILTVKEFVDNEYIFMATAKGTVKKTP 659

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GK 685
            S+     + G   +K+ + + +       G+  + +V  + K + F    +  M R  +
Sbjct: 660 LSDFSNPRKSGIIAIKLDNGDYLIGAGITKGENDIVLVSNHGKAVWFGESDVRSMGRNAR 719

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR     DGG    +     E  + + +    Y +           RG  G    +   
Sbjct: 720 GVRGMKLTDGGEVLSLLIAENEAQSVMVATENGYGKRTLLSEFRRSGRGTQGVKAIQVSD 779

Query: 746 RSGKFLSS 753
           R+G+ + +
Sbjct: 780 RNGQVVGA 787



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 5/168 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+    GD L  A      + I+L+S  GKA      ++ S   +   ++ +
Sbjct: 665 NPRKSGIIAIKLDNGDYLIGAGITKGENDIVLVSNHGKAVWFGESDVRSMGRNARGVRGM 724

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKM 650
              +  + +      +    ++V +  G       SE   + R   G   ++VS    ++
Sbjct: 725 KLTDGGEVLSLLIAENEAQSVMVATENGYGKRTLLSEFRRSGRGTQGVKAIQVSDRNGQV 784

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
                V   D + ++     L+   + +I E+ R  +GV L +  D  
Sbjct: 785 VGAKLVGDHDELMLITTGGVLIRTRVSEIRELGRATQGVTLINLSDDE 832


>gi|225862063|ref|YP_002747441.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
 gi|225790276|gb|ACO30493.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
          Length = 823

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|206970103|ref|ZP_03231056.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
 gi|218231332|ref|YP_002364861.1| DNA gyrase subunit A [Bacillus cereus B4264]
 gi|228924239|ref|ZP_04087510.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228955744|ref|ZP_04117739.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228961758|ref|ZP_04123361.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229051163|ref|ZP_04194707.1| DNA gyrase subunit A [Bacillus cereus AH676]
 gi|229072959|ref|ZP_04206155.1| DNA gyrase subunit A [Bacillus cereus F65185]
 gi|229077282|ref|ZP_04209966.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
 gi|229112907|ref|ZP_04242438.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
 gi|229130740|ref|ZP_04259693.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
 gi|229148044|ref|ZP_04276383.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
 gi|229153653|ref|ZP_04281829.1| DNA gyrase subunit A [Bacillus cereus m1550]
 gi|229181740|ref|ZP_04309063.1| DNA gyrase subunit A [Bacillus cereus 172560W]
 gi|229193745|ref|ZP_04320686.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
 gi|296500844|ref|YP_003662544.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
 gi|206734680|gb|EDZ51849.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
 gi|218159289|gb|ACK59281.1| DNA gyrase, A subunit [Bacillus cereus B4264]
 gi|228589770|gb|EEK47648.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
 gi|228601773|gb|EEK59271.1| DNA gyrase subunit A [Bacillus cereus 172560W]
 gi|228629839|gb|EEK86492.1| DNA gyrase subunit A [Bacillus cereus m1550]
 gi|228635469|gb|EEK91960.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
 gi|228652757|gb|EEL08642.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
 gi|228670586|gb|EEL25899.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
 gi|228706026|gb|EEL58330.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
 gi|228710205|gb|EEL62183.1| DNA gyrase subunit A [Bacillus cereus F65185]
 gi|228722226|gb|EEL73627.1| DNA gyrase subunit A [Bacillus cereus AH676]
 gi|228797952|gb|EEM44962.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228803972|gb|EEM50596.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228835457|gb|EEM80827.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|296321896|gb|ADH04824.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
          Length = 823

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGVSKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   ++      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVA 805


>gi|116623071|ref|YP_825227.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
 gi|116226233|gb|ABJ84942.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
          Length = 824

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/752 (31%), Positives = 407/752 (54%), Gaps = 23/752 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   +++ YL YA+S I  RA+PD+RDG KPVHRRI++ M EMGL       KS
Sbjct: 10  NMIPVNIEDEMKQSYLDYAMSVIVGRALPDIRDGLKPVHRRILYGMHEMGLAPNRPTTKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+I G+V+GK HPHGD ++YDSLVR+AQPF  RYPL+ GQGNFG++DGD  AA RYTEAR
Sbjct: 70  AKITGQVMGKYHPHGDSAIYDSLVRMAQPFAMRYPLVDGQGNFGSVDGDPPAAMRYTEAR 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++ A  +L+ +D++ VDF+  Y++ +SEP V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 130 LSKFATALLEDIDKETVDFKPNYDDTESEPEVLPTRVPNLLVNGSSGIAVGMATNIPPHN 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI  A + LI +P  ++ K++E++ GPDFPTGG I+  R+ I++++  GRG  ++RA+
Sbjct: 190 LTEIINATIHLIQHPTANLAKIMEFVQGPDFPTGGFIL-GRQGILDAFIRGRGQLKLRAK 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++G+    I+VTEIPYQV KSRLIE  + L+  K++  + DIRDES  D   ++F 
Sbjct: 249 AAIEKMGKDREQIIVTEIPYQVNKSRLIEAASALVNEKKLEGIGDIRDESDRDGMRIVFE 308

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F + M  +     P+ + L  ++K ++ HR EV+ RR
Sbjct: 309 LKRGEQAEVILNNLYKHTQLQVGFGIIMLSIV-NGQPRELGLVDMIKHFIDHRIEVVRRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + ++    R  IL G   A  ++DE+I +IR        +  +++ F  ++ Q  AI+
Sbjct: 368 TEYELRKARDREHILLGFQKALDHLDEVIRLIRASKSPKDARDSLITTFQFSDKQAQAII 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L+ L  +E  +I  EL  +     +   +L S K   + I  E++EV++ +      
Sbjct: 428 ELQLQRLTGMERQKILDELGEIQRRIAEYVEILGSDKVLRDLIIKELKEVQKNYGDE--- 484

Query: 493 GRRRTTFCEVSRADK-----ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
             RRT   E +   +     A    A+       +  ++    R           +  + 
Sbjct: 485 --RRTQIIEDTGEIRLEDLVAVEDVAITVTRGGYLKRTSVDTYRRQTRGGKGRIGMGTRA 542

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQD---I 602
            D ++  + A T   +L+ +T G+ Y L A  +        G+ +  LI+L  +++    
Sbjct: 543 EDFVERLIVASTHSYLLIFTTRGRVYWLKAYEIPDATTIGKGKHLTNLINLQGDEEAKAF 602

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
           ++   + +   +++V+  G     E +E      +G   + +   +++       GD ++
Sbjct: 603 LSVKDFVANQYIVMVTKHGVIKKSELTEFDNPLSRGIIAVSLDEGDELIGAKITMGDNYI 662

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +     + + F  + +  M R  +GVR  S  DG     +     +GL  +  A   Y 
Sbjct: 663 FLGSHEGQAIRFREEDVRAMGRQARGVRAMSLADGDYLVGMEVVEKDGL-ILSIAENGYG 721

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        L  RGG G +  K   ++G+ + 
Sbjct: 722 KRTPLEDYRLTSRGGKGVINMKTTNKTGRVVG 753



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 6/191 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           VI            S  + A+   EGD L  A      + I L S +G+A      ++ +
Sbjct: 622 VIKKSELTEFDNPLSRGIIAVSLDEGDELIGAKITMGDNYIFLGSHEGQAIRFREEDVRA 681

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  ++  + L     +V   V +    +L ++  G        +    +R GK  +
Sbjct: 682 MGRQARGVR-AMSLADGDYLVGMEVVEKDGLILSIAENGYGKRTPLEDYRLTSRGGKGVI 740

Query: 643 KVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            +       ++  ++ V  D  + +V +N K++      I +  R  +GVRL + +    
Sbjct: 741 NMKTTNKTGRVVGILSVKEDSELMIVSQNGKMIRIESSTIRQAGRSTQGVRLVNLEPDDK 800

Query: 698 SDVICFKICEG 708
                      
Sbjct: 801 VAAASVIPESD 811



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 2/148 (1%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      +R++   +  + A+   +GD L           IL ++ +G     P
Sbjct: 666 SHEGQAIRFREEDVRAMGRQARGVRAMSLADGDYLVGMEVVEKDGLILSIAENGYGKRTP 725

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +       G+ +  +   N    +V         +L++VS  G    +E S I    R
Sbjct: 726 LEDYRLTSRGGKGVINMKTTNKTGRVVGILSVKEDSELMIVSQNGKMIRIESSTIRQAGR 785

Query: 637 K--GKTFLKVSSEEKMKLVVKVTGDHVA 662
              G   + +  ++K+     +    V 
Sbjct: 786 STQGVRLVNLEPDDKVAAASVIPESDVV 813


>gi|224477951|ref|YP_002635557.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222422558|emb|CAL29372.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 892

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 406/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   EYPESRIIERNISNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L+ +++D +DF D Y+  + EP V P++FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMTKLATELLRDINKDTIDFIDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNMTEVINGVLSLSHNPDITISELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++RAR  +EE G G   IVV+EIP+QV K+R+IEKIAEL   K++  + D+RDE++    
Sbjct: 242 QMRARAEIEERGGGRQRIVVSEIPFQVNKARMIEKIAELAREKKVDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++ L+ ++T F +NM  L     P+++ L   L E+L H++
Sbjct: 302 VRVVIDIRKDANASVILNNLYKLTPLQTSFGVNMIALI-NGRPKLINLKEALVEYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
            V+ RR+ + ++  + R  IL+GL IA  +IDEII+ IR  +   +    +  RF L+E 
Sbjct: 361 VVVRRRTEYNLKKAEDRAHILEGLRIALDHIDEIISTIRESETDKEAMERLQGRFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + L+A  E++ ++L   ++    +  E+ EV+E F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELIAYIEELRAILADEEKLLELVREELTEVRERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RR+              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRSEI--QLGGLDQIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQIVTMSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T    +        L+  +  G       S      R GK  +    E+++  
Sbjct: 594 ENDESISTMIAVNDLEKEDAYLVFATKNGIVKRSSLSNFSHINRNGKIAINFRDEDELVA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
           V    G   V +   +  L+ F   ++  + R   GV+  + ++G  +  +         
Sbjct: 654 VRLTDGTKDVLLGTSHASLIRFKESKLRPLGRTAAGVKGITLREGDELVGLAVATEDSED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        +  RGG G        ++G  +
Sbjct: 714 EVLVVTENGYGKRTPLNEYRISNRGGKGIKTATITEKNGDIV 755



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 7/126 (5%)

Query: 589 AIQLLIDLNHNQDIV--TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L    ++V       DS  ++LVV+  G       +E   + R GK      +
Sbjct: 688 AGVKGITLREGDELVGLAVATEDSEDEVLVVTENGYGKRTPLNEYRISNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
              + + + +      + + +V     ++   +D I +  R  +GVRL    +      +
Sbjct: 748 TEKNGDIVCITTVTGEEDIMIVTNQGVIIRIDVDDISQNGRAAQGVRLIRLGEEQFVSTV 807

Query: 702 CFKICE 707
                +
Sbjct: 808 AKVQED 813



 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 2/101 (1%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D +L+++ +G     P          G+ I+       N DIV          +++V+++
Sbjct: 713 DEVLVVTENGYGKRTPLNEYRISNRGGKGIKTATITEKNGDIVCITTVTGEEDIMIVTNQ 772

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           G    ++  +I  N R   G   +++  E+ +  V KV  D
Sbjct: 773 GVIIRIDVDDISQNGRAAQGVRLIRLGEEQFVSTVAKVQED 813


>gi|229014661|ref|ZP_04171775.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
 gi|229170198|ref|ZP_04297884.1| DNA gyrase subunit A [Bacillus cereus AH621]
 gi|228613299|gb|EEK70438.1| DNA gyrase subunit A [Bacillus cereus AH621]
 gi|228746672|gb|EEL96561.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
          Length = 823

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/765 (33%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EPVV P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +A   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 LISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D L           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|229100796|ref|ZP_04231615.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
 gi|228682625|gb|EEL36683.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
          Length = 822

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 419/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|229099921|ref|ZP_04230844.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
 gi|229118984|ref|ZP_04248329.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
 gi|228664509|gb|EEL20005.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
 gi|228683536|gb|EEL37491.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
          Length = 823

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 419/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|293376412|ref|ZP_06622646.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
 gi|325839310|ref|ZP_08166776.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
 gi|292644968|gb|EFF63044.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
 gi|325490592|gb|EGC92907.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
          Length = 833

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/756 (32%), Positives = 409/756 (54%), Gaps = 28/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + VK  ++   ++  ++ YA+S I  RA+PD+RDG KPVHRRI+++M+++G+     +KK
Sbjct: 5   DQVKPHNIAKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYSMNDLGMHSDKPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VI K HPHGD SVYD++VR+AQ F  RYPL+ G GNFG+IDGD AAA RYTEA
Sbjct: 65  SARIVGDVIAKYHPHGDSSVYDAMVRMAQDFSYRYPLVDGHGNFGSIDGDGAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +++ ++++ +DF+  ++ E+ EPVV P++FP+LL NGT+GIAVGMAT+IP H
Sbjct: 125 RMSKLAMEMMRDINKNTIDFQPNFDGEEHEPVVLPARFPSLLVNGTTGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A LA ++NPEI +  L+E+I GPD PTG  ++   + I  +Y  G G   +R+
Sbjct: 185 NLTEVINACLAYMENPEIDVLGLMEHIKGPDLPTGA-LILGTKGIRNAYETGNGSIMMRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E   G + I+VTEIPYQV + RLIEKIAEL+  KR+  + D+R+ES  +   ++ 
Sbjct: 244 KCEIIEGHGGKYSILVTEIPYQVNRERLIEKIAELVKEKRLDGITDLRNESNREGTRIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++P +++ ++F L+ ++  + +NM  L     P+V+ L  I+  ++ H+ EV+ R
Sbjct: 304 ELRKDVNPQVMLNNLFKLTQLQVSYGINMLALQD-GQPKVLNLKEIIAAYIKHQVEVIVR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAI 431
           R+ F +   + R  IL+G  IA  +ID IIAIIR     +     ++S FS +E Q  AI
Sbjct: 363 RTQFDLNKAEDRAHILEGFRIALDHIDRIIAIIRGSSNDEEALNNLISEFSFSERQGKAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RLR L  LE  +I+ E  NL+     +  +L +  +    I  E+ EV         
Sbjct: 423 LEMRLRRLTGLERDKIEDEYQNLVTLIADLKDILANEYRVHGIIRDELTEVMIKHGD--- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RRT       +D     + +I +E + + ++N G+I+     +          +  +
Sbjct: 480 --DRRTEIV--RGSDFDIEDEDLIPEEQVIITLTNNGYIKRQPISTYRSQNRGGRGVQGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
              + D +K  L   T D +L  +  GK Y   A  +       +   I  +I++  +++
Sbjct: 536 GTHDDDYVKELLSTSTHDYLLFFTNKGKVYQKKAYTIPEYGRTAKGLPIVNIIEIAQDEE 595

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I        ++    L   +  G       S        G   L +  ++++  V K TG
Sbjct: 596 ISAIIPVKEFNENEFLFFATRTGVVKRTTLSAFGNIRTNGLIALSLREDDELIGVRKTTG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            + + +     KL+ F  DQ+  M R   GVR  + ++G ++  +   + E    +  + 
Sbjct: 656 SNDIVIASSGGKLVWFEEDQVRSMGRTAAGVRGINLEEGEVAVGMEI-VTEDQEILIVSE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + + +           RGG G        ++G  ++
Sbjct: 715 KGFGKRTPISEYRKTSRGGKGVKTINITDKNGSLVA 750



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 67/467 (14%), Positives = 135/467 (28%), Gaps = 32/467 (6%)

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
               I+   I +QV+      +        R  +LE  R       RI+   +  S D +
Sbjct: 344 NLKEIIAAYIKHQVEVIVRRTQFDLNKAEDRAHILEGFRIALDHIDRIIAIIRGSSNDEE 403

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            L   I      E  F        +    + +      K    ++  V        + A 
Sbjct: 404 ALNNLI-----SEFSFSERQGKAILEMRLRRLTGLERDKIEDEYQNLVTLIADLKDILAN 458

Query: 384 DRRVE-------ILKGLLIAYLNIDEIIAIIRNEDKPKP-VMVSRFSLTENQVDAILNLR 435
           + RV            +        EI+     + + +  +   +  +T      I    
Sbjct: 459 EYRVHGIIRDELTEVMIKHGDDRRTEIVRGSDFDIEDEDLIPEEQVIITLTNNGYIKRQP 518

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           + + R         +      +    + L  S          + +  ++      + GR 
Sbjct: 519 ISTYRSQNRGGRGVQGMGTHDDDYVKELLSTSTHDYLLFFTNKGKVYQKKAYTIPEYGRT 578

Query: 496 -------RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF--- 545
                              A +      +       +  G ++     +      +    
Sbjct: 579 AKGLPIVNIIEIAQDEEISAIIPVKEFNENEFLFFATRTGVVKRTTLSAFGNIRTNGLIA 638

Query: 546 ---KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
              +E D L        ++ I++ S+ GK       + +   G   A    I+L   +  
Sbjct: 639 LSLREDDELIGVRKTTGSNDIVIASSGGKLVWFE-EDQVRSMGRTAAGVRGINLEEGEVA 697

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD 659
           V   +     ++L+VS KG       SE    +R GK    ++  +K   +  +  VTG+
Sbjct: 698 VGMEIVTEDQEILIVSEKGFGKRTPISEYRKTSRGGKGVKTINITDKNGSLVAMKTVTGE 757

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFK 704
             + +V     ++   I QI +  R  +GV L    D      +   
Sbjct: 758 EDLLIVTNKGIIIRTPISQISQTGRATQGVTLIRLTDDQFVSSVALV 804


>gi|260778824|ref|ZP_05887716.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604988|gb|EEX31283.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 880

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/792 (33%), Positives = 397/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   IVVTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEADKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAPTPAEAKEGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL+ L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ F  +                  A
Sbjct: 475 DEYKQLLEEIAELMHILASTERLMEVIREELEAVRDGFGDARRTEITAAIHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    L        G+ I  ++ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRLKVYQLPQASRTARGKPIVNILPLEENERITAILPVSEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V    GD  + +  +  K++ FS D++  M 
Sbjct: 655 KKTSLDQFANVRSNGLIAVNLREDDSLIGVDITDGDSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGSVVGA 785


>gi|293395209|ref|ZP_06639495.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera
           DSM 4582]
 gi|291422386|gb|EFE95629.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera
           DSM 4582]
          Length = 921

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/783 (33%), Positives = 389/783 (49%), Gaps = 48/783 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKS
Sbjct: 48  EITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 107

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 108 ARVVGDVIGKYHPHGDSAVYDTIVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 167

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 168 MSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHN 227

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    LA ID+  ISIE L+E+I GPDFPT   I+  R  I E+YR GRG   +RAR
Sbjct: 228 LSEVISGCLAYIDDENISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRAR 286

Query: 256 WCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++ 
Sbjct: 287 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVV 346

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL+ ++ HRREV+ R
Sbjct: 347 EVKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-HQGQPKLLNLKDILQAFVRHRREVVTR 405

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R+ F ++    R  IL+ L IA  NID II +IR    P                     
Sbjct: 406 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVGAML 465

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                             +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 466 ERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNF 525

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V++ F           +               +   
Sbjct: 526 IAELIFILQSPDRLMEVIREELEAVRDQFGDQRRTEITANSSDINIEDLINQEDVVVTLS 585

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               V         + +      SA   KE D +   L A+T D IL  S+ G+ Y +  
Sbjct: 586 HQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKV 645

Query: 578 GNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
             L        G  I  L+ L  ++ I        Y+    + + ++ G       +E  
Sbjct: 646 YQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHVFMATASGTVKKTALTEFS 705

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
                G   + ++  +++  V    G + V +   N K++ F   Q+  M R   GVR  
Sbjct: 706 RPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPESQVRSMGRTATGVRGI 765

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  +G     +     EG   +      Y +           R   G +  K   R+G+ 
Sbjct: 766 NLGEGDSVISLIVPRGEGD-ILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERNGQV 824

Query: 751 LSS 753
           + +
Sbjct: 825 VGA 827


>gi|229015411|ref|ZP_04172417.1| DNA gyrase subunit A [Bacillus cereus AH1273]
 gi|229026935|ref|ZP_04183258.1| DNA gyrase subunit A [Bacillus cereus AH1272]
 gi|228734393|gb|EEL85064.1| DNA gyrase subunit A [Bacillus cereus AH1272]
 gi|228745890|gb|EEL95886.1| DNA gyrase subunit A [Bacillus cereus AH1273]
          Length = 823

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 418/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR           ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRGSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 LISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D L           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|326937803|gb|AEA13699.1| DNA gyrase subunit A [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 816

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 419/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 8/183 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 GLT 710
              
Sbjct: 811 EEE 813


>gi|121997372|ref|YP_001002159.1| DNA gyrase subunit A [Halorhodospira halophila SL1]
 gi|121588777|gb|ABM61357.1| DNA gyrase subunit A [Halorhodospira halophila SL1]
          Length = 856

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/784 (32%), Positives = 397/784 (50%), Gaps = 50/784 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V+L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+   +KKS
Sbjct: 7   EILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VRLAQ F  RY L+ GQGNFG+IDGDS AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDAAVYDTIVRLAQSFSMRYRLVDGQGNFGSIDGDSPAAMRYTEVR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  +D++ VDF D Y+  + EP V P++ PNLL NG SGIAVGMAT+IP HN
Sbjct: 127 MARLAHELLADIDKETVDFVDNYDGSEQEPHVLPTRLPNLLVNGGSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+ +A +AL+D+PE+ +E L+EY+  PD PTGG I+     I +++R GRG   +RAR
Sbjct: 187 LREVIDACVALVDDPELPVESLIEYVPAPDLPTGG-IIFGTAGIHQAFRTGRGRMVLRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VEE+      IVVTE+PYQV K+RL+EKIAEL+  +R+  + ++RDES ++   ++  
Sbjct: 246 AEVEEMTADRERIVVTELPYQVNKARLVEKIAELVKERRLEGISELRDESDKEGIRIVLE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+T F +N+  L     P+ + L  +L+ ++ HRREV+ RR
Sbjct: 306 LKRGEAGEIVLNNLYRHTQMQTVFGINVVAL-HEGQPRTLNLRQVLEAFIRHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           + + ++    R  +L+GL +A  NIDE+IA+I+    P                      
Sbjct: 365 TIYELRKARERAHVLEGLAVALANIDEVIALIKGSSGPAEAKAELVAREWRPGVVTEMLE 424

Query: 420 -----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+E Q  AIL+LRL  L  +E+ +I  E  NLL 
Sbjct: 425 RAGAAATRPEDLADHFGLDADSGIYRLSEAQAQAILDLRLHRLTAMEQDKIVEEYSNLLE 484

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++  +L+SG++    I  E+  +++ +        R  T         +     +  
Sbjct: 485 RIAELIHILDSGERLMEVIREELVAIRDQYGDERKTEIREDTAELSLEDLISEEDMVVTL 544

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                V        R+ +      SA   K+ D +     A+T D +L  S+ GK Y   
Sbjct: 545 SHHGYVKAQPLDGYRAQRRGGRGKSATAMKDEDFIDKLFIANTHDTLLCFSSTGKCYWRK 604

Query: 577 AGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI 631
              L        G  +  L+ L  ++ I        +D    + + +  G       S  
Sbjct: 605 VYELPQGSRTSRGRPMVNLLPLEEDERINAVVPVREFDEDHFVFMATRNGTVKKTPLSHF 664

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
                 G   +++  ++ +       GD  V ++ +  K L F    +  M R   GVR 
Sbjct: 665 SRPRSSGIIAVELRGDDTLVDAEITNGDREVMLLSDAGKALRFHESDVRAMGRTAGGVRG 724

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
              + G    VI   I      + +    Y +           RGG+G +  +   R+G+
Sbjct: 725 IRLESGQR--VIALLILGEGDILTATEHGYGKRTPVEDYPRRGRGGMGVICIRTTERNGR 782

Query: 750 FLSS 753
            + +
Sbjct: 783 VVGA 786



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 8/121 (6%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---- 649
           I L   Q ++   +      +L  +  G        +     R G   + + + E+    
Sbjct: 725 IRLESGQRVIALLIL-GEGDILTATEHGYGKRTPVEDYPRRGRGGMGVICIRTTERNGRV 783

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +  V     D + +V  +  L+   +  +  + R  +GV+L S  +     ++  +  EG
Sbjct: 784 VGAVQAAEDDEIMLVSRSGTLVRTPVADVSRVGRNTQGVKLISLDEAE--QLVGLERVEG 841

Query: 709 L 709
           L
Sbjct: 842 L 842


>gi|163938019|ref|YP_001642903.1| DNA gyrase subunit A [Bacillus weihenstephanensis KBAB4]
 gi|229065154|ref|ZP_04200447.1| DNA gyrase subunit A [Bacillus cereus AH603]
 gi|229136320|ref|ZP_04265067.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
 gi|163860216|gb|ABY41275.1| DNA gyrase, A subunit [Bacillus weihenstephanensis KBAB4]
 gi|228647192|gb|EEL03280.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
 gi|228716183|gb|EEL67902.1| DNA gyrase subunit A [Bacillus cereus AH603]
          Length = 823

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/765 (33%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EPVV P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +A   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 LISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D L           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|228942643|ref|ZP_04105175.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975573|ref|ZP_04136125.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982209|ref|ZP_04142498.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
 gi|228777561|gb|EEM25839.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
 gi|228784183|gb|EEM32210.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817069|gb|EEM63162.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 823

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 419/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|30018284|ref|NP_829915.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
 gi|29893824|gb|AAP07116.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
          Length = 824

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 2   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 60  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 120 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 180 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAG-LILGRSGIRRAYET 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 239 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 299 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 358 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 418 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 478 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 530

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 531 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 590

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 591 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGVSKRTPLSSFANIRTNGLIAISLREEDE 650

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 651 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 709

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 710 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 754



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 634 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 692

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 693 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 751

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   ++      + 
Sbjct: 752 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVA 806


>gi|308049654|ref|YP_003913220.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
 gi|307631844|gb|ADN76146.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
          Length = 876

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/792 (32%), Positives = 395/792 (49%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++  T     +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G
Sbjct: 1   MTDLAT----EITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMDRIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKVPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  L LIDN   +I++L+E I GPDFPTGG I+  R+ I E+YR 
Sbjct: 177 GMATNIPPHNLTEVVDGCLHLIDNEHATIDELIEIIPGPDFPTGG-IINGRKGIFEAYRT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  VE    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES
Sbjct: 236 GRGKIYVRAKTEVETDKNGREAIIVNEIPYQVNKARLIEKIAELVKDKKIEGISGLRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R   P++++ +++  + M+T F +NM  L     P++  L  +L+ ++
Sbjct: 296 DKDGMRIVIELKRGEVPEVVLNNLYAQTQMQTVFGMNMVAL-ANGQPKIFNLKEMLEAFI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ + ++    R  IL+GL IA  NID II +IR    P            
Sbjct: 355 RHRREVVTRRTVYELRKARERAHILEGLAIALANIDPIIELIRQSPTPAEAREALLSQGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LT  Q  AIL+LRL+ L  LE   I 
Sbjct: 415 DLGNVAGMLEKAGDDAARPEWLTPEYGIRDGKYYLTLEQAKAILDLRLQKLTGLEHEAIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E  +LL +  ++  +L S ++    I  E+  VK  +           +          
Sbjct: 475 DEYKSLLEQIAELLHILGSTERLMEVIREELEAVKTQYGDERMTEISAASADISMEDLIT 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y +    L   S    G  I  L+ L   + I      +       +L  ++KG  
Sbjct: 595 IGKVYWMRVFQLPLASRTARGRPIVNLLPLGEGERITAILPVEEYSADKFILFATAKGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +        G   + ++ ++++  V    G + V +  +  K++ F+ DQ+  M 
Sbjct: 655 KKTALNAYSRPLSSGIRAINLADDDELIGVNITEGNNEVMLFSDAGKVVRFNEDQVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR  +  +G    V      E    +      + +           R   G +  
Sbjct: 715 RTATGVRGINL-EGSDRVVSLIVPDEDGAILTVTENGFGKRTPQQEYPTKSRATKGVISI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGLVVGA 785



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 104/358 (29%), Gaps = 22/358 (6%)

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
             +  E +   S+         +   + +++   +        +     +         +
Sbjct: 510 TQYGDERMTEISAASADISMEDLITQEDVVVTLSHQG--YVKYQPLTDYEAQRRGGKGKS 567

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             ++     +    +    +  +       +         L S   +   I   +     
Sbjct: 568 ATKMKDEDFIERLLVANTHDTILCFSSIGKVYWMRVFQLPLASRTARGRPIVNLL----- 622

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
                   G R T        + +  +  +      TV  +           S  + A++
Sbjct: 623 ----PLGEGERITAIL--PVEEYSADKFILFATAKGTVKKTALNAYSR--PLSSGIRAIN 674

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
             + D L         + ++L S  GK        + +       ++  I+L  +  +V+
Sbjct: 675 LADDDELIGVNITEGNNEVMLFSDAGKVVRFNEDQVRAMGRTATGVRG-INLEGSDRVVS 733

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK--LVVKVTGDH 660
             V D    +L V+  G      + E    +R  KG   +KVS    +    V     D 
Sbjct: 734 LIVPDEDGAILTVTENGFGKRTPQQEYPTKSRATKGVISIKVSERNGLVVGAVQVGENDE 793

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAG 716
           + ++     L+   + ++ E+ R  +GVRL    +G  +  +      E    +    
Sbjct: 794 IMLITNRGTLVRTRVSEVSEVGRNTQGVRLIRTAEGEQVVGLERIDEVEVDESLLEGE 851


>gi|164510800|emb|CAK18882.1| topoisomerase II subunit A [Staphylococcus intermedius]
          Length = 882

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/762 (34%), Positives = 416/762 (54%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSV 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA+  +E  G G   IVVTEIP+QV K+R+IEKIA+L+  K+I  + D+RDE++    
Sbjct: 242 IMRAKAEIESRGGGRERIVVTEIPFQVNKARMIEKIADLVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     PQ++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPQLINLKQALYHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ + ++    R  IL+GL IA  +IDEII IIR  D        + SRF+L+E 
Sbjct: 361 EVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESDTDKVAMESLQSRFALSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT              + +I +E I + +S+  +I+ L + +         
Sbjct: 481 GDE-----RRTEI--QLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GVQGMNTLEDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + ++ I T             L+ V+ KG       S      R GK  +K   ++++  
Sbjct: 594 DQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIA 653

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V    GD H+ +      L+ F    +  MSR   GV+    +DG     +     +   
Sbjct: 654 VRLTDGDKHILIGTAQASLIRFKETDVRAMSRIAAGVKGIRLRDGDEVIGLDVADDDNKD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +    + Y +  +     L  RGG+G    K   R+G+ +
Sbjct: 714 EILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLV 755



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 70/217 (32%), Gaps = 14/217 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
               + +  +E   V ++ +G I+        + +     A+ F++ D L          
Sbjct: 602 MIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGDK 661

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSS 619
            IL+ +           ++ +      A    I L    +++   V D   K  +LVV+ 
Sbjct: 662 HILIGTAQASLIRFKETDVRAMSRIA-AGVKGIRLRDGDEVIGLDVADDDNKDEILVVTE 720

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSI 675
           KG        +   + R G         E+   +  +  V GD  + VV     ++   +
Sbjct: 721 KGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIRMEV 780

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             I    R  +GVRL    D      +     E    
Sbjct: 781 SNISVNGRMAQGVRLIRLDDEQYVSTVAKVKKEPEDL 817



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 52/378 (13%), Positives = 109/378 (28%), Gaps = 29/378 (7%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           EK+ EL+  +   + E   DE   ++++    +    D     + +  LS       L  
Sbjct: 463 EKLLELVREELTEIKEKFGDERRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPA 522

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
           +            + G+         +++   +       D  +       +  L   E+
Sbjct: 523 STYRAQNR-GGRGVQGMNTLEDDFVSQLVTTSTH------DHVLFFTNKGRVYKLKGYEV 575

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
             + R       V        E     I    L S      +  K  L    A       
Sbjct: 576 PELSRQSKGIPIVNAIELDQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNF--- 632

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
              +   +  +IA + R+  E+ +     G +         +     +  +       + 
Sbjct: 633 ---NRINRNGKIAIKFRDDDELIAVRLTDGDKHILIGTAQASLIRFKETDVRAMS--RIA 687

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
              +G         + L                    D IL+++  G        +    
Sbjct: 688 AGVKGIRLRDGDEVIGLDVADDDN------------KDEILVVTEKGYGKRTSIEDYRLS 735

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTF 641
              G  ++       N  +V     +    L+VV+++G    +E S I  N R  +G   
Sbjct: 736 NRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRL 795

Query: 642 LKVSSEEKMKLVVKVTGD 659
           +++  E+ +  V KV  +
Sbjct: 796 IRLDDEQYVSTVAKVKKE 813


>gi|161609265|ref|NP_890006.2| DNA gyrase subunit A [Bordetella bronchiseptica RB50]
 gi|161610385|ref|NP_885309.2| DNA gyrase subunit A [Bordetella parapertussis 12822]
          Length = 893

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/791 (31%), Positives = 391/791 (49%), Gaps = 58/791 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NPE SI++L+E I  PDFPTGG ++     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPECSIDELIELIPAPDFPTGG-VIYGITGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++       IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L     P+++ L  +++ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVD-GQPRLLNLKQLIEYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F+++    R  +L+GL +A  NID+ IAII+    P                        
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARV 427

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC---EVSRADKATL 510
           ++A    +  +L   ++    I+ E++ +K  FS S    RR        E+   D  T 
Sbjct: 488 VMATIADLLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITP 547

Query: 511 QQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
              ++       + S         K       A   KE D +     A+T D +L  S  
Sbjct: 548 MDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNR 607

Query: 570 GKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    +        G+ I  +  L   + +        +     + + +S+G   
Sbjct: 608 GRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDHYVFMATSRGTVK 667

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               S+     + G   + +   + +       G H V +  +  K + F  + +  M R
Sbjct: 668 KTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGR 727

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR    ++G     +     E  + + +    Y +           RG  G +  +
Sbjct: 728 NARGVRGMMLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 787

Query: 743 GFPRSGKFLSS 753
              R+G+ + +
Sbjct: 788 TSSRNGRVVGA 798



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 5/167 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   +GD L  A        ++L S  GKA      ++     +   ++ +
Sbjct: 676 NPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRGM 735

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKM 650
           +       I      D T  +L  +  G       +E   + R  K  + +   S   ++
Sbjct: 736 MLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGRV 795

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
              V V   D + ++     L+   + +I EM R  +GV L S  DG
Sbjct: 796 VGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDG 842


>gi|223043397|ref|ZP_03613443.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
 gi|222443186|gb|EEE49285.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
          Length = 890

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 403/762 (52%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRIVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  +        +  RF L+E 
Sbjct: 361 TVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLDDIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEHYLVFATKRGIVKRSALSNFSRINKNGKIAIGFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ F    +  + R   GV+  + ++G +   +     E   
Sbjct: 654 VRLTTGNEDILIGTSHASLIRFPESALRPLGRTAAGVKGITLREGDVVVGLDVAHAESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVV 664
           +S  ++LVV+  G        E   + R GK      +   +   + +      + + VV
Sbjct: 710 ESEDEVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVV 769

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
                ++   ++ I +  R  +GVRL    +G     +     E  
Sbjct: 770 TNAGVIIRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVAKVKEEED 815


>gi|163856193|ref|YP_001630491.1| DNA gyrase subunit A [Bordetella petrii DSM 12804]
 gi|163259921|emb|CAP42222.1| DNA gyrase subunit A [Bordetella petrii]
          Length = 885

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/795 (31%), Positives = 395/795 (49%), Gaps = 66/795 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDSAAAMRYTEVRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NPE S+++L+E I  PDFPTGG I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPECSVDELIELIPAPDFPTGG-IIYGMSGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++       IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L     P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVILNNLYKNTQLQDTFGMNLVALVD-GQPRLLNLKQLIHYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F+++    R  +L+GL +A  NID+ IAII+    P                        
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMSRAWDSSLVREMLSRA 427

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DLDAVGGPAAFRPDDLHESFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A    +  +L   ++    I  E++ +K  FS      RR     E+         + 
Sbjct: 488 VMATIADLLDILAKPERITTIIGEELQAIKAEFSTGAKDTRRS----EIEFNATELDTED 543

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+         RS K       A   KE D +     A+T + +L 
Sbjct: 544 LITPTDMVVTLSHAGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHNYLLC 603

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +        G  I  +  L   + I        +     + + +S+
Sbjct: 604 FSDRGRVYWLKVWEVPQGTRGSRGRPIVNMFPLADGEKITVVLPVKEFSEDNYVFMATSR 663

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       S+     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 664 GTVKKTPLSDFSNPRKAGIIAVGLDEGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVR 723

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR  + +DG     +     E  + + +    Y +  +        RG  G 
Sbjct: 724 PMGRNARGVRGMTLEDGQSVIALLVAGDESQSVLTATENGYGKRTSIAEYTRHGRGTKGM 783

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+GK + +
Sbjct: 784 IAIQTSSRNGKVVGA 798



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 61/167 (36%), Gaps = 5/167 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   EGD L  A        ++L S  GKA      ++     +   ++ +
Sbjct: 676 NPRKAGIIAVGLDEGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRGM 735

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEK 649
              +    I      D +  +L  +  G       +E   + R  K  + +     + + 
Sbjct: 736 TLEDGQSVIALLVAGDESQSVLTATENGYGKRTSIAEYTRHGRGTKGMIAIQTSSRNGKV 795

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           +  V+ +  D + ++     L+   + +I EM R  +GV L S  DG
Sbjct: 796 VGAVLVMPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDG 842


>gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221307816|ref|ZP_03589663.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312138|ref|ZP_03593943.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221317071|ref|ZP_03598365.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221321334|ref|ZP_03602628.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. SMY]
 gi|121881|sp|P05653|GYRA_BACSU RecName: Full=DNA gyrase subunit A
 gi|40019|emb|CAA26222.1| unnamed protein product [Bacillus subtilis]
 gi|467397|dbj|BAA05243.1| A subunit of DNA gyrase [Bacillus subtilis]
 gi|2632274|emb|CAB11783.1| DNA gyrase (subunit A) [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482377|dbj|BAI83452.1| DNA gyrase subunit A [Bacillus subtilis subsp. natto BEST195]
          Length = 821

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/765 (32%), Positives = 419/765 (54%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  NT     V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQNTP---QVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 297 DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKVLTLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +IE+E I V +++ G+++          K
Sbjct: 476 KERFNDE-----RRTEIV--TSGLETIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +       +   I  
Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +++   L   +  G +     S+       G   L +  +++
Sbjct: 589 LLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F    + EM R   GV+  +  D  +   +   + E
Sbjct: 649 LMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGMEI-LEE 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +    + Y +           RGG G    K    +G+ ++
Sbjct: 708 ESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVA 752



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 6/176 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL  +E D L        T +I++ + +G     P  ++        A    
Sbjct: 632 NIRNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTA-AGVKG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           I L  +  +V   + +    +L+V+ KG        E    +R GK         +  ++
Sbjct: 691 ITLTDDDVVVGMEILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQL 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
             V    G+  + ++  +  L+   I+ I    R  +GVRL    +      +   
Sbjct: 751 VAVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806


>gi|323703935|ref|ZP_08115565.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
 gi|323531093|gb|EGB21002.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
          Length = 820

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/754 (33%), Positives = 399/754 (52%), Gaps = 24/754 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI++++ E+GL     F+KS
Sbjct: 7   KVIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKPFRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVG+V+   HPHGD ++YDS+VRLAQ F  RYPLI G GNFG+IDGD  AA RYTEAR
Sbjct: 67  AGIVGKVMQDFHPHGDMAIYDSMVRLAQDFSSRYPLIEGHGNFGSIDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L  +D++ VDF   Y+    EPV+ P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MAKITLEMLADIDKETVDFAPNYDNRTKEPVILPAKIPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + +IDNP ++ ++L++ I GPDFPTG  I   R+ I  +YR GRG  ++RA+
Sbjct: 187 IGEVIDGVIMMIDNPNVTPDELMKVIKGPDFPTGAKI-MGRDGIRAAYRTGRGSIKIRAQ 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   I+V EIP+QV K++L+EKIAEL+  K+I  + D+RDES      ++  
Sbjct: 246 ATIETKNNGRSAIIVNEIPFQVNKAKLVEKIAELVKDKKIEGISDLRDESDRRGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P++++  ++  + M+  F + M  L     P+V+ L  +L  +L H+++V+ RR
Sbjct: 306 LKKDANPNVILNQLYKFTQMQESFGIIMLALV-NNQPKVLNLAQVLFYYLEHQKDVITRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAIL 432
           + + ++  + R  I++GL IA  ++DE+I IIR     +       + F+LTE Q +AI+
Sbjct: 365 TKYELKKAEARAHIVEGLRIALAHLDEVIKIIRESRTTEEAKQGLVTNFNLTEVQAEAIV 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLRSL  LE  +++ E  +LLA+ + + S+L   K+    I  E+ EVK+ F+     
Sbjct: 425 EMRLRSLTGLEVEKLEKEYKDLLAKIDYLRSVLADEKKVLGIIKDELTEVKKKFADP--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIE------KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             RRT     +  D         E           +   +    RS +     ++A+  K
Sbjct: 482 --RRTVISNEAAGDFDIEDLIDEEGMVVTITNQGYIKRISLDTYRSQRRGGKGITAMGTK 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D +K    A T   +L  +  GKAY L    +       +   +  L+ ++  + + T
Sbjct: 540 EEDFVKHLFVASTHHYLLFFTNQGKAYRLKVHEIPEAGRTAKGTPLVNLLYISSGEYVTT 599

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                 +     L + + +G       SE   + R G   + +   +++  V    G + 
Sbjct: 600 VIPIKDFTEEAYLFMATKQGVVKKTNLSEYDTSRRDGINAINLDESDELVAVELTHGREE 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +       + F  + +  M R  +GV+  +   G  S V    + +G   +      Y
Sbjct: 660 IILSTREGMAIRFPEEDVRPMGRTARGVKGITL-TGDDSVVNMDVVKDGGDLLVVTANGY 718

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  N        RGG G +  K  PR+G  + +
Sbjct: 719 GKRTNLDEYRTQTRGGKGIINIKTSPRNGPVVGA 752



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 6/200 (3%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
              ++A +       V+          S    ++A++  E D L      H  + I+L +
Sbjct: 605 DFTEEAYLFMATKQGVVKKTNLSEYDTSRRDGINAINLDESDELVAVELTHGREEIILST 664

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            +G A   P  ++         +   I L  +  +V   V      LLVV++ G      
Sbjct: 665 REGMAIRFPEEDVRPMGRTARGV-KGITLTGDDSVVNMDVVKDGGDLLVVTANGYGKRTN 723

Query: 628 ESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
             E    TR GK  + +     +   +  +V    D + ++     ++  +   +    R
Sbjct: 724 LDEYRTQTRGGKGIINIKTSPRNGPVVGALVVKDDDEIMMISAEGIMIRLAAKDVSTFGR 783

Query: 684 -GKGVRLQSYKDGGISDVIC 702
             +GV L    +      + 
Sbjct: 784 NTQGVTLMKVAENDHIVAVA 803


>gi|196036123|ref|ZP_03103523.1| DNA gyrase, A subunit [Bacillus cereus W]
 gi|195991290|gb|EDX55258.1| DNA gyrase, A subunit [Bacillus cereus W]
          Length = 823

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|218895147|ref|YP_002443558.1| DNA gyrase, A subunit [Bacillus cereus G9842]
 gi|228905438|ref|ZP_04069393.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
 gi|228968647|ref|ZP_04129630.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218544417|gb|ACK96811.1| DNA gyrase, A subunit [Bacillus cereus G9842]
 gi|228791076|gb|EEM38694.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228854258|gb|EEM98961.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
          Length = 823

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 419/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|2731385|gb|AAB95117.1| DNA gyrase [Serratia marcescens]
          Length = 880

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/793 (33%), Positives = 396/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----LAREITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLAEVVNGCLAYIDDENISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYLRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL+ +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYALTQLQVTFGINMVAL-HQGQPKLLNLKDILEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVSAMLERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L S ++    I  E+  VKE+++          T         
Sbjct: 475 LDEYKELLNFIAELIFILESPERLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +   N K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +  +G     +     EG   +      + +           R   G + 
Sbjct: 715 GRTATGVRGINLGEGDSVISLIVPRGEGD-ILTVTQNGFGKRTAVTEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G+ + +
Sbjct: 774 IKVSERNGQVVGA 786


>gi|291614526|ref|YP_003524683.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1]
 gi|291584638|gb|ADE12296.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1]
          Length = 849

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/788 (31%), Positives = 399/788 (50%), Gaps = 63/788 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 11  PVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRAYKKSARI 70

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 71  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMRYTEIRMAK 130

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP+VFP++FPNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 131 IAHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATNIPPHNMTE 190

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LAL+ NP++ IE+L+E +  PDFPT G  +     + E YR GRG   +RAR   
Sbjct: 191 VVDACLALLKNPDMDIEQLIELVPAPDFPTAG-FIYGLAGVKEGYRTGRGRVVMRARTHF 249

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++G+G    I++ E+PYQV K+ L+ KI E++  KRI  + +IRDES +     +    
Sbjct: 250 EDIGKGDRQAIIIDELPYQVNKANLLMKIGEMVREKRIEGVSEIRDESDKSGMRAVIELK 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  + D+++  ++  + M+  F +NM  +     P++  L  +++ +L HRREV+ RR+ 
Sbjct: 310 RGENADVILNQLYKDTQMQDSFGINMVAIVD-GQPKLCNLKDVIEAFLRHRREVVTRRTI 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  IL+GL +A  N+DEIIA+I+    P        +               
Sbjct: 369 FELRKARERGHILEGLAVALSNVDEIIALIKAAPTPPDAKRELMARGWRSSLVEDMLSRV 428

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L++ Q  AIL LRL+ L  LE+ +I  E   ++ +   
Sbjct: 429 DEASRPEGLAPEFGLVKGTGYFLSDAQAQAILELRLQRLTGLEQDKIVGEYREVMDKITD 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L    +    I  E+  ++  F       +RR+     ++       + +I  E +
Sbjct: 489 LLDILAKPARVTQIIGDELITIRSQFGD-----KRRSEIVTHTQDMS---MEDLIAPEDV 540

Query: 521 TVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G++++ K               A   KE D +     A+T D IL  S  G+ 
Sbjct: 541 VVTMSHGGYMKAQKLDEYRAQKRGGRGKQATATKEDDFIDNLFIANTHDYILCFSNRGRV 600

Query: 573 YTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y L   ++        G+ I  L+ L   + I        +     +   +S+G      
Sbjct: 601 YWLKVYDVPQGTRISRGKPIVNLLPLEAGEKINAILPVKQFAEDQFIFFATSEGTVKKTP 660

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GK 685
            S+     + G   + +   + +  V    G H V +  +  + + F  D +  M R  +
Sbjct: 661 LSDFANPRKAGIIAISLDEGDFLIGVAITDGKHDVMLFSDEGRAVRFDEDDVRGMGRTAR 720

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR  +   GG    +     E  + + +    Y +           RG  G +  +   
Sbjct: 721 GVRGMNLAKGGKVIALLVAENEEQSVLTATENGYGKRTPISEYTRHGRGTQGMIAIQTSE 780

Query: 746 RSGKFLSS 753
           R+GK +++
Sbjct: 781 RNGKVVAA 788



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 5/168 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   EGD L           ++L S +G+A      ++         ++ +
Sbjct: 666 NPRKAGIIAISLDEGDFLIGVAITDGKHDVMLFSDEGRAVRFDEDDVRGMGRTARGVRGM 725

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKM 650
                 + I      +    +L  +  G       SE   + R   G   ++ S    K+
Sbjct: 726 NLAKGGKVIALLVAENEEQSVLTATENGYGKRTPISEYTRHGRGTQGMIAIQTSERNGKV 785

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
                V   D + ++G +  L+   +++I EM R  +GV L +  +G 
Sbjct: 786 VAATLVKPEDEIMLIGTSGVLIRTRVNEIREMGRATQGVTLMNVGEGE 833


>gi|125974846|ref|YP_001038756.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405]
 gi|256003897|ref|ZP_05428884.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
 gi|281418699|ref|ZP_06249718.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
 gi|125715071|gb|ABN53563.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405]
 gi|255992235|gb|EEU02330.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
 gi|281407783|gb|EFB38042.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
 gi|316941968|gb|ADU76002.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 1313]
          Length = 827

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/769 (32%), Positives = 414/769 (53%), Gaps = 32/769 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  + ++ +  V++   +++ ++ YA+S I +RA+PD+RDG KPVHRRI++AM  +G
Sbjct: 1   MSDTKDVKQQRIIPVNIETEMKKSFIDYAMSVIVDRALPDVRDGLKPVHRRILYAMYGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                A++K A  VGEV+GK HPHGD +VYDSLVR+AQ F  RY  I G GNFG+IDGD 
Sbjct: 61  FTPDKAYRKCATTVGEVLGKYHPHGDAAVYDSLVRMAQNFSLRYTQIDGHGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+++++  +L+ +++D VDF+  ++E   EPVV PS+FPNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARLSKISMEMLRDINKDTVDFKPNFDEHHMEPVVLPSRFPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  + +ID+P +++++L++ I GPDFPT GIIV  ++ I ++Y  
Sbjct: 181 GMATNIPPHNLVEVIDGVIKVIDDPNVTLDELMKIIKGPDFPTAGIIV-GKQGIRDAYAT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA   +E++      IVVTE+PYQV K++LIE+IAEL+  KRI  + D+RDES
Sbjct: 240 GKGKIIVRAVATIEQMPGNKQRIVVTELPYQVNKAKLIERIAELVKEKRIDSISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQVMPLDGIL 361
            +D   ++    +  + ++++  ++  + M+  F +NM  L +       P+V+ L   +
Sbjct: 300 DKDGMRIVIELKKDANANVVLNQLYKNTQMQDAFNVNMVALVLNNEKKFEPRVLNLRQAI 359

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMV 418
             ++ H+ +V+ RR+ F +   + R  IL+GL IA  N+DE+I IIR+       K  ++
Sbjct: 360 DYYIKHQEDVIVRRTKFDLDKAEARAHILEGLRIAIDNLDEVINIIRSSRNESDAKEALI 419

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RF  +E Q  AI+++RL  L  LE  +I +E   LL E +    +L +     + I  E
Sbjct: 420 QRFGFSEKQAQAIVDMRLGRLTALEREKIDNEYKELLKEIKYYKDVLANKSMVLDIIKKE 479

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           + E+K+ +        RRT              + +IE E   V +++ G+I+       
Sbjct: 480 LEEIKQKYGDE-----RRTKIIPDEDE---IEIEDLIEVEENVVTLTHFGYIKRLPTSTY 531

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
              K     +  L  +E D ++      T D IL  +  GK Y L    +       +  
Sbjct: 532 KSQKRGGKGVIGLSTREEDFVEQLFITSTHDYILFFTNKGKVYRLKTYEIPEAGRQAKGT 591

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           AI  L+ L+ N+ I T      Y     L + +  G     +  E     + G T + + 
Sbjct: 592 AIVNLLQLDQNEKITTVIPISEYKEGLYLFMATKHGIVKKTDLMEFDNIRKGGLTAVSLR 651

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             +++  V    G  ++ +V  N   + F+   +  + R  +GV+  + ++      +  
Sbjct: 652 ENDELIDVRLTDGTKNILLVTRNGMSIRFNEKDVRPLGRAAQGVKGITLEEDDEVVGMSA 711

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            I E  + +    R + +        +  RGG G L  +   ++GK   
Sbjct: 712 DI-ENASVLVVTERGFGKRTELDEYKVQIRGGKGILTYRVTEKTGKVAG 759



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 63/185 (34%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++     +         L+A+  +E D L        T  ILL++ +G +      ++  
Sbjct: 628 IVKKTDLMEFDNIRKGGLTAVSLRENDELIDVRLTDGTKNILLVTRNGMSIRFNEKDVRP 687

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                + +   I L  + ++V          +LVV+ +G     E  E     R GK  L
Sbjct: 688 LGRAAQGV-KGITLEEDDEVVGMSADIENASVLVVTERGFGKRTELDEYKVQIRGGKGIL 746

Query: 643 KVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
                EK   V         D V ++  +  ++      I  + R  +GV L    +G  
Sbjct: 747 TYRVTEKTGKVAGMKLVSEDDDVMMISSDGSIIRIKAKDISLLGRATQGVTLMRMDEGVS 806

Query: 698 SDVIC 702
              + 
Sbjct: 807 VVSVA 811


>gi|30260201|ref|NP_842578.1| DNA gyrase subunit A [Bacillus anthracis str. Ames]
 gi|42779087|ref|NP_976334.1| DNA gyrase subunit A [Bacillus cereus ATCC 10987]
 gi|47525260|ref|YP_016609.1| DNA gyrase subunit A [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183045|ref|YP_026297.1| DNA gyrase subunit A [Bacillus anthracis str. Sterne]
 gi|49476687|ref|YP_034366.1| DNA gyrase subunit A [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65317474|ref|ZP_00390433.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bacillus anthracis str. A2012]
 gi|165873036|ref|ZP_02217657.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
 gi|167641756|ref|ZP_02399999.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
 gi|170689477|ref|ZP_02880667.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
 gi|170707601|ref|ZP_02898054.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
 gi|177655272|ref|ZP_02936826.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
 gi|190569281|ref|ZP_03022175.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196041934|ref|ZP_03109221.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
 gi|196045484|ref|ZP_03112715.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
 gi|227812684|ref|YP_002812693.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684]
 gi|228918106|ref|ZP_04081634.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229187723|ref|ZP_04314859.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
 gi|229199682|ref|ZP_04326325.1| DNA gyrase subunit A [Bacillus cereus m1293]
 gi|229604222|ref|YP_002864663.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248]
 gi|254687065|ref|ZP_05150923.1| DNA gyrase subunit A [Bacillus anthracis str. CNEVA-9066]
 gi|254724152|ref|ZP_05185937.1| DNA gyrase subunit A [Bacillus anthracis str. A1055]
 gi|254735168|ref|ZP_05192878.1| DNA gyrase subunit A [Bacillus anthracis str. Western North America
           USA6153]
 gi|254755968|ref|ZP_05208000.1| DNA gyrase subunit A [Bacillus anthracis str. Vollum]
 gi|254761352|ref|ZP_05213374.1| DNA gyrase subunit A [Bacillus anthracis str. Australia 94]
 gi|301051747|ref|YP_003789958.1| DNA gyrase subunit A [Bacillus anthracis CI]
 gi|30253522|gb|AAP24064.1| DNA gyrase, A subunit [Bacillus anthracis str. Ames]
 gi|42735002|gb|AAS38942.1| DNA gyrase, A subunit [Bacillus cereus ATCC 10987]
 gi|47500408|gb|AAT29084.1| DNA gyrase, A subunit [Bacillus anthracis str. 'Ames Ancestor']
 gi|49176972|gb|AAT52348.1| DNA gyrase, A subunit [Bacillus anthracis str. Sterne]
 gi|49328243|gb|AAT58889.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|164711248|gb|EDR16804.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
 gi|167510310|gb|EDR85713.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
 gi|170127597|gb|EDS96471.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
 gi|170666579|gb|EDT17352.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
 gi|172080199|gb|EDT65291.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
 gi|190559588|gb|EDV13579.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196023691|gb|EDX62367.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
 gi|196027189|gb|EDX65809.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
 gi|227006418|gb|ACP16161.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684]
 gi|228583777|gb|EEK41952.1| DNA gyrase subunit A [Bacillus cereus m1293]
 gi|228595791|gb|EEK53475.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
 gi|228841586|gb|EEM86702.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229268630|gb|ACQ50267.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248]
 gi|300373916|gb|ADK02820.1| DNA gyrase subunit A [Bacillus cereus biovar anthracis str. CI]
          Length = 823

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|228911334|ref|ZP_04075138.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
 gi|228848352|gb|EEM93202.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
          Length = 822

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 419/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAELKAILADEEKVLEIIREELIEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|242243250|ref|ZP_04797695.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
 gi|242233199|gb|EES35511.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
          Length = 893

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/762 (33%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G +V  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LVLGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D        +  RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ FS   +  + R   GV+  S ++G     +     E   
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVADSESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L     +V   V DS    ++LVV+  G       SE   + R GK      +
Sbjct: 688 AGVKGISLREGDTVVGLDVADSESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
              +   + +      + + VV     ++   +  I +  R  +GVRL    DG     +
Sbjct: 748 TERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTV 807

Query: 702 CFKICEGL 709
                E  
Sbjct: 808 AKVKEEDD 815


>gi|228949216|ref|ZP_04111484.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228810499|gb|EEM56852.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 823

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKTQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|319399909|gb|EFV88155.1| DNA gyrase, A subunit [Staphylococcus epidermidis FRI909]
          Length = 893

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/762 (33%), Positives = 405/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G +V  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LVLGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D        +  RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
           V   TG+   ++   +  L+ FS   +  + R   GV+  S ++G  + D+         
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDNVVDLDVADSESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVV 664
           +S  ++LVV+  G       SE   + R GK      +   +   + +      + + VV
Sbjct: 710 ESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVV 769

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
                ++   +  I +  R  +GVRL    DG     +     E  
Sbjct: 770 TNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVKEEDD 815


>gi|33592101|ref|NP_879745.1| DNA gyrase subunit A [Bordetella pertussis Tohama I]
 gi|33571745|emb|CAE41246.1| DNA gyrase subunit A [Bordetella pertussis Tohama I]
 gi|332381517|gb|AEE66364.1| DNA gyrase subunit A [Bordetella pertussis CS]
          Length = 893

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/791 (31%), Positives = 390/791 (49%), Gaps = 58/791 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NPE SI++L+E I  PDFPTGG ++     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPECSIDELIELIPAPDFPTGG-VIYGITGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++       IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L     P+++ L  +++ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVD-GQPRLLNLKQLIEYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F+++    R  +L+GL +A  NID+ IAII+    P                        
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARV 427

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC---EVSRADKATL 510
           ++A    +  +L    +    I+ E++ +K  FS S    RR        E+   D  T 
Sbjct: 488 VMATIADLLDILARPDRITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITP 547

Query: 511 QQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
              ++       + S         K       A   KE D +     A+T D +L  S  
Sbjct: 548 MDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNR 607

Query: 570 GKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    +        G+ I  +  L   + +        +     + + +S+G   
Sbjct: 608 GRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDHYVFMATSRGTVK 667

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               S+     + G   + +   + +       G H V +  +  K + F  + +  M R
Sbjct: 668 KTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGR 727

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR    ++G     +     E  + + +    Y +           RG  G +  +
Sbjct: 728 NARGVRGMMLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 787

Query: 743 GFPRSGKFLSS 753
              R+G+ + +
Sbjct: 788 TSSRNGRVVGA 798



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 5/167 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   +GD L  A        ++L S  GKA      ++     +   ++ +
Sbjct: 676 NPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRGM 735

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKM 650
           +       I      D T  +L  +  G       +E   + R  K  + +   S   ++
Sbjct: 736 MLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGRV 795

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
              V V   D + ++     L+   + +I EM R  +GV L S  DG
Sbjct: 796 VGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDG 842


>gi|218901212|ref|YP_002449046.1| DNA gyrase, A subunit [Bacillus cereus AH820]
 gi|228930500|ref|ZP_04093500.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931512|ref|ZP_04094422.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228988723|ref|ZP_04148808.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229124997|ref|ZP_04254171.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
 gi|218539391|gb|ACK91789.1| DNA gyrase, A subunit [Bacillus cereus AH820]
 gi|228658498|gb|EEL14164.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
 gi|228771035|gb|EEM19516.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228828155|gb|EEM73879.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228829219|gb|EEM74856.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 823

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/765 (32%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IRN       K  ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRNSKTAEIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|317492550|ref|ZP_07950977.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919300|gb|EFV40632.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 882

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/801 (33%), Positives = 404/801 (50%), Gaps = 68/801 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSARIVG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  I++E L+++I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLNEVINGCLAYIDDENITVEGLMQHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RA+  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRAKAEVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++  ++ L+ M+  F +NM  L     P+++ L   L+ +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-HQGQPKLLTLKDCLQAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEGLAIALSNIDPIIELIRHAPNPAEAKALLVARG 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WALGTVAAMLERAGDNAARPEWLEPQFGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +   +  +L S  +    I  E+  V++ F  +     RRT   E +    
Sbjct: 475 LDEYKELLEQIAALIFILESPDRLMEVIREELIAVRDQFGDA-----RRTEITENTAD-- 527

Query: 508 ATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S++G+          + +      SA   KE D +   L A+T
Sbjct: 528 -INIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANT 586

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        Y+    +
Sbjct: 587 HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEANERITAILPVREYEEGRHV 646

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
            + ++ G       ++       G   + ++  +++  V    G + V +     K++ F
Sbjct: 647 FMATASGTVKKTALTDFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAAGKVVRF 706

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
              Q+  M R   GVR  +         +     EG   +      Y +           
Sbjct: 707 PESQVRSMGRTATGVRGINLNGEDRVVSLIIPRGEGD-ILTVTENGYGKRTGVAEYPTKS 765

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           R   G +  K   R+G  + +
Sbjct: 766 RATQGVISIKVSERNGNVVGA 786


>gi|167038685|ref|YP_001661670.1| DNA gyrase subunit A [Thermoanaerobacter sp. X514]
 gi|300913755|ref|ZP_07131072.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
 gi|307723228|ref|YP_003902979.1| DNA gyrase subunit A [Thermoanaerobacter sp. X513]
 gi|166852925|gb|ABY91334.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514]
 gi|300890440|gb|EFK85585.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
 gi|307580289|gb|ADN53688.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X513]
          Length = 807

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/757 (32%), Positives = 405/757 (53%), Gaps = 18/757 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G
Sbjct: 1   MSEE----KEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD 
Sbjct: 57  LTPDKPYKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAV
Sbjct: 117 PAAMRYTEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGG+I+  R+ I E+Y  
Sbjct: 177 GMATNIPPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVIL-GRDGIKETYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES
Sbjct: 236 GRGKIVVRAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    + ++P +++  ++M + M+  F   M  L     P+++ L  I+++++
Sbjct: 295 DRNGMKVVIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYV 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F 
Sbjct: 354 DHQADVVTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AI+++RL  L  LE  +++ EL+ L+ + +++  +L   ++    I  E+ E+
Sbjct: 414 LSEKQAQAIVDMRLGRLTGLERQKVEDELEELMEKIKELKGILADERKVLEIIKKELLEI 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ ++                          +       +        ++ K     +  
Sbjct: 474 KDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           +  +E D ++      T DR+L  +  GK Y+L   ++       +  AI  LI +   +
Sbjct: 534 ISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIGQGE 593

Query: 601 DIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +        +     +++ + KG        E  +  R G   + +   +++  V    
Sbjct: 594 KVTAVIPLKKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTN 653

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G+  + +       + F+   I  M R  KGV   S ++     V    +  G   +   
Sbjct: 654 GEREIIIGTARGYAIRFNEKDIRPMGRVAKGVIAISLREDDEV-VEMDLVHPGSEILVVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + +  +     L  R G G +  +   ++GK +S
Sbjct: 713 EKGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 749



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A      ++       + +   I L  + ++V   +     ++LVV+ KG     
Sbjct: 662 TARGYAIRFNEKDIRPMGRVAKGVI-AISLREDDEVVEMDLVHPGSEILVVTEKGFGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS 682
           +  E    TR GK  + +   EK   +  +  V   D   ++  N  L+   +  I +M 
Sbjct: 721 DLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMH 780

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R  +GV L    DG           E 
Sbjct: 781 RDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 53/140 (37%), Gaps = 2/140 (1%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +  N   IR +   +  + A+  +E D +      H    IL+++  G            
Sbjct: 668 IRFNEKDIRPMGRVAKGVIAISLREDDEVVEMDLVHPGSEILVVTEKGFGKRTDLEEYRL 727

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKT 640
               G+ I  +        +V+    +   + +++S+ G    ++ S+I    R  +G T
Sbjct: 728 QTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMHRDTRGVT 787

Query: 641 FLKVSSEEKMKLVVKVTGDH 660
            +K+   +++    ++  + 
Sbjct: 788 LMKLDDGDRVVSTARIENEE 807


>gi|206975819|ref|ZP_03236730.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
 gi|217957587|ref|YP_002336129.1| DNA gyrase subunit A [Bacillus cereus AH187]
 gi|222093780|ref|YP_002527827.1| DNA gyrase subunit a [Bacillus cereus Q1]
 gi|229142243|ref|ZP_04270767.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
 gi|206745913|gb|EDZ57309.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
 gi|217063216|gb|ACJ77466.1| DNA gyrase, A subunit [Bacillus cereus AH187]
 gi|221237825|gb|ACM10535.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus cereus Q1]
 gi|228641261|gb|EEK97568.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
 gi|324324000|gb|ADY19260.1| DNA gyrase subunit A [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 823

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTGD  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGDEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|308066846|ref|YP_003868451.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
 gi|305856125|gb|ADM67913.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
          Length = 854

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/766 (33%), Positives = 420/766 (54%), Gaps = 35/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ N      +    +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G
Sbjct: 1   MADQN---NSQIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 58  MSPDKPYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDM 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +L+ ++++ VDF   Y+ E+SEPVV P+++PNLL NG  GIAV
Sbjct: 118 AAAMRYTEARLSKIAMEMLRDLNKETVDFMPNYDGEESEPVVLPARYPNLLVNGVGGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +   ALI+NP+I+  +L++YI GPDFPT G I+  R  I ++Y+ 
Sbjct: 178 GMATNIPPHNLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYIL-GRSGIRQAYQT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE+G  +  I+V E+PYQV K+RL+EKIAEL+  KRI  + D+RDES
Sbjct: 237 GRGSVTMRAKTTIEEIGNKA-RIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    R ++P++++ ++F  + M++ F +NM  +     P+++ L  +L  +L
Sbjct: 296 DRTGMRVVIELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIV-NNEPKILNLKDVLYHYL 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H+ EV+ RR+ F ++  + R  IL+GL IA  ++DE+IA+IR+       +  ++ RFS
Sbjct: 355 KHQVEVIRRRTEFDLKKAEARAHILEGLRIALDHLDEVIALIRSSQTAEAAREGLIERFS 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT  Q  AIL++RL+ L  LE  +I++E + L+ +  +   +L +     N I+ E+ E+
Sbjct: 415 LTLEQSQAILDMRLQRLTGLEREKIENEYNELIQKIAEYREILANEHLVLNIISEELNEL 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT   E++  +++ L + +I +E + + +++ G+I+          K
Sbjct: 475 KERFAD-----DRRT---EITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQK 526

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                +  +  K+ D ++     ++   +L  +  GK Y + A  +        G  I  
Sbjct: 527 RGGRGVVGMDTKDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIIN 586

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI +   + I        +     L   +  G        +     + G   + +  ++ 
Sbjct: 587 LIQIEQGESINAVIPIEEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDA 646

Query: 650 MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G    ++       + F    +  M R   GV+  +  +     VI   I +
Sbjct: 647 LIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSMGRSATGVKGINLDESD--AVIGMDIVD 704

Query: 708 -GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             L  +    + Y +    +   +  RGG G        ++G  + 
Sbjct: 705 TSLDILIVTAKGYGKRTPVVDYRIQSRGGKGIKTINVTDKNGPVVG 750



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 107/323 (33%), Gaps = 19/323 (5%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               EI     +      +      +T      I  L + + R  +         +   E
Sbjct: 481 DRRTEITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDE 540

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEI-FSKSTDLGRRRTTFC------EVSRADKATL 510
                  + +          + +  +   +         R T        E   +  A +
Sbjct: 541 DFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVI 600

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRIL 564
                 ++      +  G I+              L A++ +E D+L           ++
Sbjct: 601 PIEEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMI 660

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + +  G +   P  ++ S       +   I+L+ +  ++   + D++  +L+V++KG   
Sbjct: 661 IGTAQGMSIRFPESDVRSMGRSATGV-KGINLDESDAVIGMDIVDTSLDILIVTAKGYGK 719

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE 680
                +    +R GK    ++  +K   +  +  V T + + ++  +  L+  S+ +I  
Sbjct: 720 RTPVVDYRIQSRGGKGIKTINVTDKNGPVVGLKVVKTEEDLMIITASGTLIRTSMGEIST 779

Query: 681 MSR-GKGVRLQSYKDGGISDVIC 702
           M R  +GVRL + +D      +C
Sbjct: 780 MGRNTQGVRLINIRDDDSVATVC 802



 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 104/326 (31%), Gaps = 20/326 (6%)

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
           ++L    +P+   +  +       R  V   RS  R       ++      + +L I   
Sbjct: 492 SILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDEDFVEHLFITNS 551

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
              +        V   +     +         + +L ++E+ +  + +  +         
Sbjct: 552 HHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVIPIEEFV----- 606

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
                +  +   A +   +K+         R+        R D A ++  + + +   ++
Sbjct: 607 -----EDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMII 661

Query: 524 ISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            + +G         V         +  ++  E D++       T+  IL+++  G     
Sbjct: 662 GTAQGMSIRFPESDVRSMGRSATGVKGINLDESDAVIGMDIVDTSLDILIVTAKGYGKRT 721

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
           P  +       G+ I+ +   + N  +V   V  +   L+++++ G        EI    
Sbjct: 722 PVVDYRIQSRGGKGIKTINVTDKNGPVVGLKVVKTEEDLMIITASGTLIRTSMGEISTMG 781

Query: 636 RK--GKTFLKVSSEEKMKLVVKVTGD 659
           R   G   + +  ++ +  V +   +
Sbjct: 782 RNTQGVRLINIRDDDSVATVCRANKN 807


>gi|314934955|ref|ZP_07842314.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
 gi|313652885|gb|EFS16648.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
          Length = 891

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 403/762 (52%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 4   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 64  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 124 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 184 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSI 242

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 243 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 302

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 303 VRIVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  +        +  RF L+E 
Sbjct: 362 TVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSER 421

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 422 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERF 481

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + +I +E I + +S+  +I+               
Sbjct: 482 GDE-----RRTEI--QLGGLDDIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 534

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 535 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 594

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 595 ENDETISTMIAVKDLESEEHYLVFATKRGIVKRSALSNFSRINKNGKIAIGFKEDDELIA 654

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ F    +  + R   GV+  + ++G +   +     E   
Sbjct: 655 VRLTTGNEDILIGTSHASLIRFPESALRPLGRTAAGVKGITLREGDVVVGLDVAHAESED 714

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 715 EVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERNGNIV 756



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVV 664
           +S  ++LVV+  G        E   + R GK      +   +   + +      + + VV
Sbjct: 711 ESEDEVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVV 770

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
                ++   ++ I +  R  +GVRL    +G     +     E  
Sbjct: 771 TNAGVIIRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVAKVKEEED 816


>gi|149189884|ref|ZP_01868163.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
 gi|148836199|gb|EDL53157.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
          Length = 885

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/792 (32%), Positives = 391/792 (49%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I N +I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLNEVIDGCLAYIKNEDITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +EE   G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIEEDKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYSQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDE+I +I+N   P            
Sbjct: 355 DHRREVVTRRTIFELRKARDRAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +    + LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 ELGSVASMLERAGTDAARPDWLEDQYGIRDGLYYLTEQQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V+  +                     A
Sbjct: 475 DEYKALLEEIAELMHILASTERLMEVITEELELVQATYGDERRSEITAAVHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I        +     + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V    G   + +  +  K++ FS D++  M 
Sbjct: 655 KKTSLDQFSNVRANGLIAVNLRDDDSLIGVDITDGQSDIMLFSKQGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     +G   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADEDQVVSLIVPSNQGD-ILTVTQNGYGKRTELEEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|319790113|ref|YP_004151746.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
 gi|317114615|gb|ADU97105.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
          Length = 809

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/758 (33%), Positives = 411/758 (54%), Gaps = 30/758 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M ++GL     FKK
Sbjct: 2   ERIVPVPIEEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLMPDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGE +GK HPHGD +VYD+LVR+AQ F  RYPLI GQGNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGETLGKFHPHGDTAVYDALVRMAQDFSMRYPLIEGQGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +++D VDF+  ++    EP V P+KFPNLL NG SGIAVGMAT+IP H
Sbjct: 122 RLSKIALELLKDIEKDTVDFKPNFDGSLEEPEVLPAKFPNLLVNGASGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+C+A   L+D+PE + E+L+++I GPDFPTG  ++   E + + Y+ GRG   +RA
Sbjct: 182 NISEVCKAVQYLVDHPEATTEELMQFIKGPDFPTGAEVINP-EELPKIYKKGRGSVTIRA 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV      IV+TE+PYQV K+ LI+KIAEL+  K+I  + DIRDES  +   V+ 
Sbjct: 241 KHTIEEVR-KRSAIVITELPYQVNKADLIKKIAELVKEKKIDGIADIRDESDREGIRVVI 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P +++  ++ L+ ++T F  NM  L     P+++ L   L+E++  RREV+ R
Sbjct: 300 ELKRDATPQVVLNRLYKLTPLQTNFNFNMIALV-NGEPKLLNLKRYLEEFIGFRREVILR 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAI 431
           R+++ ++  + R+ IL+GL  A  NID ++ +++    P+     +  +F L+E Q  AI
Sbjct: 359 RTAYLLRKAEARLHILEGLRKALENIDAVVKLVKEAPSPQEALEGLREKFELSEAQAKAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I  E   L  E      ++ S ++Q   I  E+ ++ E F     
Sbjct: 419 LDMKLQRLTGLEREKIDQEHAALTEEANYYRFVMESDQEQRRLIKEEMAQIIEKFGD--- 475

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
             +RRT              ++MIE E + + ++++G++  + + +          +  +
Sbjct: 476 --QRRTKIVSKESE---IDIESMIEDEEVIIFLTHKGFVARVSAGTYRTQSRSGTGVRGI 530

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ--- 600
             +EGD +K  + A + D +L+ +  GK Y L A  +           +   L       
Sbjct: 531 KTREGDFVKDMITASSKDYLLIFTNQGKVYWLKAYEIPKMERPSRGHSIRNFLPGMAGNE 590

Query: 601 ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
               I+    +     +  V+ +G        E       G   + +   +++  V  V+
Sbjct: 591 IVSRIIPVKEFSLNKDVFFVTQRGYVKRTPLKEFSNPRSTGINAINLEPGDRLVYVGLVS 650

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             D++ ++ +N + + F +  + +M R  +GVR                  E    +   
Sbjct: 651 DKDNIILISKNGRAIKFPVADVRQMGRNARGVRGILLDPDDSVVAAAVVEPEDRFLLIVT 710

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + Y +        L +RGG G +  K   ++GK   +
Sbjct: 711 EKGYGKRVEIEEFHLQRRGGKGLIAAKLSEKTGKVADA 748



 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 6/182 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  ++A++ + GD L         D I+L+S +G+A   P  ++     +   ++ +
Sbjct: 626 NPRSTGINAINLEPGDRLVYVGLVSDKDNIILISKNGRAIKFPVADVRQMGRNARGVRGI 685

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KM 650
           +    +  +  A V      LL+V+ KG    VE  E     R GK  +     E   K+
Sbjct: 686 LLDPDDSVVAAAVVEPEDRFLLIVTEKGYGKRVEIEEFHLQRRGGKGLIAAKLSEKTGKV 745

Query: 651 KLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
                +  D  + +V +  K++      IP   R  +GVR+Q   +   +  V      E
Sbjct: 746 ADATTLKDDEPIILVSKKGKIIRVKSADIPVYGRHTRGVRIQKLAEDDAVVSVSKVTEAE 805

Query: 708 GL 709
             
Sbjct: 806 EE 807


>gi|27466923|ref|NP_763560.1| DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
 gi|251811369|ref|ZP_04825842.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874726|ref|ZP_06283605.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
 gi|293367575|ref|ZP_06614228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|82592835|sp|P0C0R0|GYRA_STAES RecName: Full=DNA gyrase subunit A
 gi|27314465|gb|AAO03602.1|AE016744_5 DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
 gi|251805118|gb|EES57775.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296442|gb|EFA88957.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
 gi|291318288|gb|EFE58681.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724140|gb|EGG60658.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU144]
          Length = 893

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/762 (33%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G +V  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LVLGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D        +  RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ FS   +  + R   GV+  S ++G     +     E   
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVADSESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L     +V   V DS    ++LVV+  G       SE   + R GK      +
Sbjct: 688 AGVKGISLREGDTVVGLDVADSESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
              +   + +      + + VV     ++   +  I +  R  +GVRL    DG     +
Sbjct: 748 TERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTV 807

Query: 702 CFKICEGL 709
                E  
Sbjct: 808 AKVNEEDD 815


>gi|321313674|ref|YP_004205961.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
 gi|320019948|gb|ADV94934.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
          Length = 821

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/765 (32%), Positives = 419/765 (54%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  NT     V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQNTP---QVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 297 DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKVLTLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +IE+E I V +++ G+++          K
Sbjct: 476 KERFNDE-----RRTEIV--TSGLETIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +       +   I  
Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +++   L   +  G +     S+       G   L +  +++
Sbjct: 589 LLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALGLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F    + EM R   GV+  +  D  +   +   + E
Sbjct: 649 LMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGMEI-LEE 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +    + Y +           RGG G    K    +G+ ++
Sbjct: 708 ESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVA 752



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 6/176 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL  +E D L        T +I++ + +G     P  ++        A    
Sbjct: 632 NIRNNGLIALGLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTA-AGVKG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           I L  +  +V   + +    +L+V+ KG        E    +R GK         +  ++
Sbjct: 691 ITLTDDDVVVGMEILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQL 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
             V    G+  + ++  +  L+   I+ I    R  +GVRL    +      +   
Sbjct: 751 VAVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806


>gi|242372597|ref|ZP_04818171.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
 gi|242349652|gb|EES41253.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
          Length = 891

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 402/762 (52%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  +  +++ +++  + +++ F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRIVIDVRKDANASVILNNLYKQTPLQSSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  +        +  RF L+E 
Sbjct: 361 VVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVRNLESEDDYLVFATKRGIVKRSALSNFSRINKNGKIAISFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ F    +  + R   GV+  + ++G     +     E   
Sbjct: 654 VRLTTGNEDILIGTSHASLIRFPESALRPLGRTAAGVKGITLREGDEVVGLDVAHAESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 7/121 (5%)

Query: 589 AIQLLIDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L    ++V       +S  ++LVV+  G       SE   + R GK      +
Sbjct: 688 AGVKGITLREGDEVVGLDVAHAESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
              +   + +      + + VV     ++   ++ I +  R  +GVRL    +G     +
Sbjct: 748 TERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVEDISQNGRAAQGVRLMKLGEGQFVSTV 807

Query: 702 C 702
            
Sbjct: 808 A 808


>gi|307129982|ref|YP_003881998.1| DNA gyrase subunit A [Dickeya dadantii 3937]
 gi|306527511|gb|ADM97441.1| DNA gyrase subunit A [Dickeya dadantii 3937]
          Length = 877

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 397/793 (50%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLSDLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA ID+  IS+E L+ +I GPDFPT   I+  +  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIDDENISVEGLMTHIPGPDFPTAA-IINGKRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++  ++  + M+  F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNHLYSQTQMQVSFGINMVAL-HQGQPKLMTLKEILSAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARERAHILEGLAIALANIDPIIELIRHASTPADAKAALVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WALGGVAAMLERAGDDAARPEWLEPEFGIHDGYYHLTELQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LLA+  ++  +L S ++    I  E+  ++E ++ +        +         
Sbjct: 475 LDEYKELLAQIAELLFILRSPERLMEVIREELVAIREQYNDARRTEITHNSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQENVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y L    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWLKVYQLPEASRGARGRPIINLLPLEPDERITAILPVREYEEGMNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ FS   +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  + +D      +     EG   +      + +        +  R   G + 
Sbjct: 715 GRTATGVRGINLQDDDRVVSLIVPRGEGD-ILTVTQNGFGKRTAVTEYPVKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 59/166 (35%), Gaps = 17/166 (10%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV  +   +R++   +  +  ++ ++ D +   +       IL ++ +G
Sbjct: 692 NEVMLFSAEGKVVRFSESAVRTMGRTATGVRGINLQDDDRVVSLIVPRGEGDILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                            + +  +     N  +V A   DS  ++++++  G       SE
Sbjct: 752 FGKRTAVTEYPVKSRATKGVISIKVSERNGKVVGAVQVDSADQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSE---------------EKMKLVVKVTGD 659
           +    R   G T ++ + +               +++  VV V G+
Sbjct: 812 VSIVGRNTQGVTLIRTAEDEQVVGLQRVAEPVEDDELDSVVPVDGE 857


>gi|282163381|ref|YP_003355766.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
 gi|282155695|dbj|BAI60783.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
          Length = 812

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/758 (34%), Positives = 403/758 (53%), Gaps = 30/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E V  V +   + + Y+ YA+S I  RA+PD+RDG KPVHRR+++ M E+G  +   +
Sbjct: 3   TQETVLPVKIEEEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYGMYELGNTYDKPY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+V+GK HPHGD ++YD++VR+ Q F  RYPLI GQGNFG++DGDSAAA RYT
Sbjct: 63  KKSARVVGDVMGKYHPHGDMAIYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A+ +L  +D++ V+F   ++E   EP V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 123 EVRMAKIADEMLDDLDKETVNFVPNFDESLKEPSVLPAKLPNLLINGSSGIAVGMATNIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALI++P I   +LL+ I GPDFPTG  I   RE I ++Y  GRG  ++
Sbjct: 183 PHNISEVIDGTVALINDPAIEPLELLKLITGPDFPTGAYIY-GREGIKDAYLTGRGSIKI 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E G G   I+VTEIPY V K++LIE IA+L+  K++  + D+RDES  D   +
Sbjct: 242 RAKAEITEEG-GRNVILVTEIPYMVNKAKLIENIADLVRDKKLEGISDLRDESDRDGMRI 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  + ++L+  ++  + MET F +N   L     P+ + L   L+ +L HR+EV+
Sbjct: 301 VIELKKGANANVLLNQLYRHTQMETTFGVNNLALVD-NQPRTLSLKETLEYYLKHRQEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RRS F ++    R  IL GLL+A  NID+ + I+R     D  K V +S++ L+E Q  
Sbjct: 360 TRRSQFELKKAQAREHILAGLLVALDNIDDFVNILRRSASADDAKAVFMSKYGLSEEQSK 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+ E   L+     +  +L S +   + I  E+ E++  +   
Sbjct: 420 AILDMRLRGLTGLERRKIEDERAELIKLIAHLKEVLASPQMVLDIIKNELLELRAKYGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT   E   +D   + + +I  E + V ISN G+I+     +          + 
Sbjct: 479 ----GRRTIIKE---SDGEIVDEDLIPVENVVVTISNTGYIKRQPVDTYRTQRRGGMGIM 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHN 599
            +  KE D +     A T D +L  +  G+ Y L    +     +  G+AI  L+ L  N
Sbjct: 532 GMETKEEDFVVDVFTASTHDHLLFFTNKGRVYVLKVYEIPEASRQSRGKAIVNLLTLMPN 591

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + +        +D    L++ + +G       S      R G   + +   +++  V   
Sbjct: 592 ESVNAMIPIKEFDEKHYLIMCTREGTIKKTALSSFQNIRRTGIIAIGLDEGDELISVKLT 651

Query: 657 T-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             G  V +   N K   FS  ++  M R   GV      +     +    + E  + +  
Sbjct: 652 NGGQEVLIATRNGKANRFSESEVRPMGRQAGGVIGIRLTEKDKV-IGMEVVSESASILTV 710

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + +           RGG G +  K   R+G  ++
Sbjct: 711 CENGFGKRTAISEYTPHHRGGQGMINIKTTLRNGGVVA 748



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK----VSSEEK 649
           I L     ++   V   +  +L V   G       SE   + R G+  +     + +   
Sbjct: 687 IRLTEKDKVIGMEVVSESASILTVCENGFGKRTAISEYTPHHRGGQGMINIKTTLRNGGV 746

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           + +      D + VV  +  ++  ++  I E+SR  +GV++ + K    + V   K+   
Sbjct: 747 VAIASVTDDDQLLVVTRDGIMMRINVKDISEISRNTQGVKIITLKSENDAVVGVAKLVSE 806


>gi|83749097|ref|ZP_00946102.1| DNA gyrase subunit A [Ralstonia solanacearum UW551]
 gi|83724218|gb|EAP71391.1| DNA gyrase subunit A [Ralstonia solanacearum UW551]
          Length = 1016

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/796 (30%), Positives = 385/796 (48%), Gaps = 63/796 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 141 PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARI 200

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 201 VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 260

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ V+F   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E
Sbjct: 261 IAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLRE 320

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NP+ ++++L+E I  PDFPT G I+     + E YR GRG   +RA+   
Sbjct: 321 VVDGCLHLLRNPDATVDELIELIPAPDFPTAG-IIYGISGVREGYRTGRGRVVMRAKTHF 379

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KR+  + DIRDES +    V+    
Sbjct: 380 EDIDRGQRQSIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVIELK 439

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 440 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVD-GQPRLLNLRQMLECFLLHRREVVTRRTV 498

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  IL+GL +A  NIDE IAII+    P                        
Sbjct: 499 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVRDMLSRA 558

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 559 ESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 618

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F                +          
Sbjct: 619 VMAQIADLLDILARPERITAIIVEELTLIRSEFGDERRSQIEHNATELDTEDLITPQDLV 678

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 679 VTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLY 738

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    +        G  I  +  L+  + I        +D    + + +SKG       
Sbjct: 739 WLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKGTVKKTAL 798

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E     + G   + +   + +       G H V +  +  K + F  + +  M R  +G
Sbjct: 799 TEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG 858

Query: 687 VRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           VR  + ++G     +     E           + + +    Y +           RG  G
Sbjct: 859 VRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYTRHGRGTKG 918

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK +++
Sbjct: 919 MIAIQTSERNGKVVAA 934



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 792 TVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP 851

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L   Q ++   V  +             +L  +  G       SE  
Sbjct: 852 MGRQARGVRGM-NLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYT 910

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     + + +   +    D + ++     L+   +D+I EM R  +GV
Sbjct: 911 RHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGV 970

Query: 688 RLQSYKDG 695
            L +  +G
Sbjct: 971 TLIAVGEG 978


>gi|329735767|gb|EGG72048.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU028]
          Length = 894

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/762 (33%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G +V  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LVLGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D        +  RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ FS   +  + R   GV+  S ++G     +     E   
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVADSESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L     +V   V DS    ++LVV+  G       SE   + R GK      +
Sbjct: 688 AGVKGISLREGDTVVGLDVADSESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
              +   + +      + + VV     ++   +  I +  R  +GVRL    DG     +
Sbjct: 748 TERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTV 807

Query: 702 CFKICEGL 709
                E  
Sbjct: 808 AKVNEEDD 815


>gi|228474188|ref|ZP_04058925.1| DNA gyrase, A subunit [Staphylococcus hominis SK119]
 gi|314935206|ref|ZP_07842559.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80]
 gi|228271883|gb|EEK13220.1| DNA gyrase, A subunit [Staphylococcus hominis SK119]
 gi|313656541|gb|EFS20280.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80]
          Length = 884

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/764 (33%), Positives = 410/764 (53%), Gaps = 30/764 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +++L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+  
Sbjct: 2   ADSLPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA
Sbjct: 62  DKPYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+MT++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMA
Sbjct: 122 MRYTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  L L  NP+++I +L+E I GPDFPT G ++  +  I  +Y  GRG
Sbjct: 182 TNIPPHNLTEVIDGVLRLSQNPDVTISELMEDIQGPDFPTSG-LILGKSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
             ++RAR  +EE G G   IVVTEIPYQV K+R+IEKIAEL   KRI  + D+RDE++  
Sbjct: 241 SIQMRARASIEERGGGRQRIVVTEIPYQVNKARMIEKIAELAREKRIEGITDLRDETSLR 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               V+    +  + ++++ +++  + ++T F +NM  L     P+++ L   L E+L H
Sbjct: 301 TGVRVVIDVRKDANANVILNNLYKHTPLQTSFGVNMIALV-NGRPKLINLKEALVEYLEH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLT 424
           ++ V+ RR+ + ++    R  IL+GL IA  +IDEII+IIR  D        +  RF L+
Sbjct: 360 QKTVVRRRTEYNLKKAKDRAHILEGLRIALDHIDEIISIIRESDTDKVAMETLQERFKLS 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AIL++RLR L  LE  +I++E + LL+   +++ +L + +     +  E+ E+KE
Sbjct: 420 ERQAQAILDMRLRRLTGLERDKIENEYNELLSYIAELEEILANEEVLLQLVRDELTEIKE 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            F        RRT              + +I +E I + +S+  +I+             
Sbjct: 480 RFGDE-----RRTEI--QLGGLDHLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I
Sbjct: 533 GRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAI 592

Query: 595 DLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +L +++ I T        D    L+  + KG       S      + GK  +    ++++
Sbjct: 593 ELENDEVISTMIAVRDLEDENSFLVFATKKGIVKRSALSNFSHINKNGKIAIGFKEDDEL 652

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE- 707
             V    G   + +   +  L+ F  + +  + R   GVR  S ++  +   +     E 
Sbjct: 653 IAVRLTDGKQDILLGTAHASLIRFPENSLRPLGRTASGVRGISLRENDVVVGLDVAYAES 712

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +    + Y +        L  RGG G    K   R+G  +
Sbjct: 713 EDEVLVVTEKGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNVV 756



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG----DHVAVV 664
           +S  ++LVV+ KG       SE   + R GK        E+   VV +T     + + +V
Sbjct: 711 ESEDEVLVVTEKGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNVVCITTVSGQEDLMIV 770

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE 707
            +   ++   ++ I +  R  +GVRL    D      +   I +
Sbjct: 771 TDGGIIIRLQVEDISQNGRATQGVRLMKLGDNQAVSTVAKVIDK 814


>gi|118475784|ref|YP_892935.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
 gi|118415009|gb|ABK83428.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
          Length = 824

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 2   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 60  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 120 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 180 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 239 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 299 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF 
Sbjct: 358 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 418 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 478 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 530

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 531 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 590

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 591 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 650

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 651 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 709

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 710 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 754



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 634 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 692

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 693 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 751

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 752 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 811

Query: 708 G 708
            
Sbjct: 812 D 812


>gi|167036442|ref|YP_001664020.1| DNA gyrase subunit A [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256751446|ref|ZP_05492324.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|320114867|ref|YP_004185026.1| DNA gyrase subunit A [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855276|gb|ABY93684.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749665|gb|EEU62691.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|319927958|gb|ADV78643.1| DNA gyrase, A subunit [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 807

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/757 (32%), Positives = 402/757 (53%), Gaps = 18/757 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G
Sbjct: 1   MSEE----KEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG++DGD 
Sbjct: 57  LTPDKPYKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAV
Sbjct: 117 PAAMRYTEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGGII+  R+ I E+Y  
Sbjct: 177 GMATNIPPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIIL-GRDGIKETYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES
Sbjct: 236 GRGKIVVRAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R ++P +++  ++M + M+  F   M  L     P+++ L  I+++++
Sbjct: 295 DRNGMKIVIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYV 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F 
Sbjct: 354 DHQADVVTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AI+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+
Sbjct: 414 LSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEI 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ ++                          +       +        ++ K     +  
Sbjct: 474 KDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           +  +E D ++      T DR+L  +  GK Y+L   ++       +  AI  LI +   +
Sbjct: 534 ISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGE 593

Query: 601 DIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +         +    +++ + KG        E  +  R G   + +   +++  V    
Sbjct: 594 KVTAVIPLKKSEDIKYIVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTN 653

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G+  + +       + F+   I  M R  KGV   S ++     V    +      +   
Sbjct: 654 GEREIIIGTARGYAIRFNEKDIRPMGRVAKGVIAISLREDDEV-VEMDLVHPNSEILVVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + +  +     L  R G G +  +   ++GK +S
Sbjct: 713 ENGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 749



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A      ++       + +   I L  + ++V   +     ++LVV+  G     
Sbjct: 662 TARGYAIRFNEKDIRPMGRVAKGVI-AISLREDDEVVEMDLVHPNSEILVVTENGFGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS 682
           +  E    TR GK  + +   EK   +  +  V   D   ++  N  L+   +  I +M 
Sbjct: 721 DLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMH 780

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R  +GV L    DG           E 
Sbjct: 781 RDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 54/140 (38%), Gaps = 2/140 (1%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +  N   IR +   +  + A+  +E D +      H    IL+++ +G            
Sbjct: 668 IRFNEKDIRPMGRVAKGVIAISLREDDEVVEMDLVHPNSEILVVTENGFGKRTDLEEYRL 727

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKT 640
               G+ I  +        +V+    +   + +++S+ G    ++ S+I    R  +G T
Sbjct: 728 QTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMHRDTRGVT 787

Query: 641 FLKVSSEEKMKLVVKVTGDH 660
            +K+   +++    ++  + 
Sbjct: 788 LMKLDDGDRVVSTARIENEE 807


>gi|284009348|emb|CBA76530.1| DNA gyrase subunit A [Arsenophonus nasoniae]
          Length = 881

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/803 (33%), Positives = 410/803 (51%), Gaps = 66/803 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +S ++ +    +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ 
Sbjct: 1   MRDSGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNV 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DG
Sbjct: 61  LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSMRYMLVDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM ++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGI
Sbjct: 121 DSAAAMRYTEVRMAKIAHELLADLDKETVDFIPNYDGTEQIPDVMPTRIPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  LA ID+  ISIE LLEYI GPDFPT   I+  R  I+++Y
Sbjct: 181 AVGMATNIPPHNLSEVIDGCLAYIDDENISIEGLLEYIPGPDFPTAA-IINGRRGIIDAY 239

Query: 244 RLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           R GRG   +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +R
Sbjct: 240 RTGRGKVYIRARANIEVDDKNGRETIIVNEIPYQVNKARLIEKIAELVKDKRVEGISALR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL+
Sbjct: 300 DESDKDGMRIVIEVKRDAVAEVVLNNLYSLTQLQVSFGINMVALYD-GQPRLLNLKEILE 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------- 415
            ++ HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P         
Sbjct: 359 AFVRHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRQASTPNEAKLALIA 418

Query: 416 ------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                         V   ++ LTE Q  AIL+LRL+ L  LE  
Sbjct: 419 RPWQLGNVSAMLASAGDNAARPEWLEPQYGVREGQYYLTEPQAQAILDLRLQKLTSLEHD 478

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I  E   LL +   +  +L S ++    I  E+  VKE +        RRT   E S  
Sbjct: 479 KILDEYRELLKQIAALLYILTSPERLMEVIREELEAVKEQYRD-----VRRTEITENSAD 533

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I +E + V +S++G+          + +      SA   KE D ++  L A
Sbjct: 534 ---INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVA 590

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
           +T D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        +D   
Sbjct: 591 NTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQNERITAILPVREFDDGH 650

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            + + ++ G        +       G   + ++  +++  V    G + V +     K++
Sbjct: 651 YVFMATASGTVKKTSLKDFSRPRSAGIIAVNLNEGDELIGVDLTAGKNEVMLFSAGGKVV 710

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F+ + +  M R   GVR      G     +     EG   +      Y +         
Sbjct: 711 RFAENAVRPMGRTATGVRGIKLHAGDKVVSLIVPRGEGD-ILTVTENGYGKRTEQSEYPT 769

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+G  + +
Sbjct: 770 KSRATQGVISIKVSERNGNVVGA 792


>gi|57865926|ref|YP_190089.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
 gi|81672841|sp|Q5HK04|GYRA_STAEQ RecName: Full=DNA gyrase subunit A
 gi|57636584|gb|AAW53372.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
          Length = 893

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/762 (33%), Positives = 405/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G +V  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LVLGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L   R P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNSR-PKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D        +  RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ FS   +  + R   GV+  S ++G     +     E   
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVADSESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L     +V   V DS    ++LVV+  G       SE   + R GK      +
Sbjct: 688 AGVKGISLREGDTVVGLDVADSESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
              +   + +      + + VV     ++   +  I +  R  +GVRL    DG     +
Sbjct: 748 TERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTV 807

Query: 702 CFKICEGL 709
                E  
Sbjct: 808 AKVNEEDD 815


>gi|188584650|ref|YP_001916195.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349337|gb|ACB83607.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 807

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/758 (34%), Positives = 412/758 (54%), Gaps = 18/758 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++   +   V  + ++  +E  +L YA+S I  RA+PD+RDG KPVHRRI+ AM ++G
Sbjct: 1   MSDT---MRGKVVPIDIQEEMENSFLDYAMSVIVSRALPDVRDGLKPVHRRILFAMHDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSAR+VGEV+GK HPHGD ++YD++VR+AQ F  RYPL+ G GNFG++DGDS
Sbjct: 58  ITPEKPYKKSARVVGEVLGKYHPHGDVALYDAMVRMAQDFSTRYPLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM +++  +L+ +D++ +D++  ++E   EPVV PS+FPNLL NG++GIAV
Sbjct: 118 AAAMRYTEVRMAKISTELLKDIDKETIDYQQNFDETLEEPVVLPSRFPNLLVNGSAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +A+I+NPEI+ E L+ YI GPDFPTGGII+  R  I ++Y  
Sbjct: 178 GMATNIPPHNLDEVIDGIVAMIENPEIADEDLMNYIKGPDFPTGGIIL-GRNGIKDAYST 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RA+  +E +      I+VTEIPYQV K++LIE IA L+  K+I  + D+RDES
Sbjct: 237 GRGKLKIRAKTEIENLKGNKHRILVTEIPYQVNKAKLIESIASLVREKKIEGISDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R ++P++L+  ++  + +E  F + +  L     P+V+ L  IL  +L
Sbjct: 297 DRDGLRVVIELKRDVNPNVLLNQLYKYTTLEQSFGIILLALV-NGEPKVLSLREILDHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
             ++EV+ RR+ + ++  + R  IL+GL IA  N+D +I +IR     K      ++ FS
Sbjct: 356 EFQKEVIIRRTKYLLRKAEARAHILEGLKIALNNLDAVIKLIRQSKTVKEAKEGLMNNFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL+ L  LE  +I+ E   LL + +  + +L   +   N I  EI+E+
Sbjct: 416 LSDKQAQAILDMRLQKLTALERDKIEEEYSELLKKIDYYNRVLGDEQLVLNIIKEEIQEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +S S        T            +  +       V        R+ K     +S 
Sbjct: 476 KEKYSDSRRTLITNKTDELDEEDLIPDEEVIITLTHQGYVKRVPLSTYRNQKRGGRGISG 535

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
           +  K  D ++      T + IL  +  GK Y L    +     +  G AI  L+ ++ ++
Sbjct: 536 MTTKNDDFVEHLFATSTHNYILFFTNKGKVYRLKVYEIPEASRQARGTAIVNLLAIDPDE 595

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +     L  V+ +G A  V  SE+ A  + G   + ++ ++++  V    
Sbjct: 596 HITAVIPIQEFTEDDYLFFVTKQGVAKKVILSELKAYRKDGLIAINLNEDDELIDVHLTD 655

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDS 714
           G   + +  E    + FS +++  M R  +GV+  S KD     VI   I  E    +  
Sbjct: 656 GKQEIILGTEQGLAIKFSEEEVRSMGRNSRGVKGISLKDNDR--VIGMDIAQENSDLLIV 713

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +   Y +           RGG G    K   +SG    
Sbjct: 714 SENGYGKRTPVSEYRTQSRGGKGIYTFKPSEKSGNLAG 751



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 63/508 (12%), Positives = 143/508 (28%), Gaps = 24/508 (4%)

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L    + +  +    II      G   V S   I++ Y   +    +R R         +
Sbjct: 317 LNQLYKYTTLEQSFGIILLALVNGEPKVLSLREILDHYLEFQKEVIIR-RTKYLLRKAEA 375

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELII--AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
              ++  +   +     + K+        +    L +    S +  + +L  + + L   
Sbjct: 376 RAHILEGLKIALNNLDAVIKLIRQSKTVKEAKEGLMNNFSLSDKQAQAILDMRLQKLTAL 435

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
              +     S++  +      VL   ++   +  + I +    +        ++   +  
Sbjct: 436 ERDKIEEEYSELLKKIDYYNRVLGDEQLVLNIIKEEIQEIKEKYSDSRRTLITNKTDELD 495

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           +  +   + ++I   +   +  +       +        ++         +         
Sbjct: 496 EEDLIPDEEVIITLTHQGYVKRV--PLSTYRNQKRGGRGISGMTTKNDDFVEHLFATSTH 553

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
            Y +       +   +  +    S + +   I   +           +         E +
Sbjct: 554 NYILFFTNKGKVYRLKVYEIPEASRQARGTAIVNLLAI------DPDEHITAVIPIQEFT 607

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
             D           + + +                 L A++  E D L           I
Sbjct: 608 EDDYLFFVTKQGVAKKVILSELKAYRKD-------GLIAINLNEDDELIDVHLTDGKQEI 660

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +L +  G A       + S   +   +   I L  N  ++   +      LL+VS  G  
Sbjct: 661 ILGTEQGLAIKFSEEEVRSMGRNSRGV-KGISLKDNDRVIGMDIAQENSDLLIVSENGYG 719

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
                SE    +R GK        EK   +   + V  D  + +V     +    ++ I 
Sbjct: 720 KRTPVSEYRTQSRGGKGIYTFKPSEKSGNLAGCIVVNEDEEIILVTAQGVINRQQVEGIS 779

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +MSR  +GVRL   KD      +     
Sbjct: 780 QMSRRTQGVRLIKLKDDDQVVSLAIPES 807


>gi|238753719|ref|ZP_04615080.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
 gi|238707955|gb|EEQ00312.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
          Length = 889

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 395/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++ +I+IE L+E+I GPDFPTG  I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDEDITIEGLMEHIPGPDFPTGA-IINGRRGIDEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYVRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE ++ +        T         
Sbjct: 475 LDEYKELLTLIGELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +   + K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSTDGKVVRFPEGQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|293604169|ref|ZP_06686577.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter
           piechaudii ATCC 43553]
 gi|292817394|gb|EFF76467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter
           piechaudii ATCC 43553]
          Length = 891

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/791 (31%), Positives = 390/791 (49%), Gaps = 58/791 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NP  ++++L+E I  PDFPTGG I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPACTVDELIEIIPAPDFPTGG-IIYGMSGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++       IV+  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVIDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L     P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVD-GQPRLLNLKQMIDYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F+++    R  +L+GL +A  NID+ IAII+    P                        
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVRDMLSRA 427

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC---EVSRADKATL 510
           +++    +  +L   ++    I+ E++ +K  FS +T   RR        E+   D  T 
Sbjct: 488 IMSTIADLLDILARPERITTIISDELQAIKAEFSTNTKDSRRSEIELNATELDTEDLITP 547

Query: 511 QQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
              ++       + S         K       A   KE D +     A+T D +L  S  
Sbjct: 548 TDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDYLLCFSNR 607

Query: 570 GKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    +        G+ I  +  L   + I        +     + + +S+G   
Sbjct: 608 GRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFSEDHYVFMATSRGTVK 667

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               S+     + G   + +   + +       G H V +  ++ K + F  + +  M R
Sbjct: 668 KTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVRPMGR 727

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR    ++      +     E  T + +    Y +           RG  G +  +
Sbjct: 728 NARGVRGMMLEETQTVIALLVAGDETQTVLTATENGYGKRTPIGEYTRHGRGTKGMIAIQ 787

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 788 TTSRNGKVVGA 798



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 9/187 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   +GD L  A        ++L S  GKA      ++     +   ++ +
Sbjct: 676 NPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVRPMGRNARGVRGM 735

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKM 650
           +       I      D T  +L  +  G        E   + R  K  + +   S   K+
Sbjct: 736 MLEETQTVIALLVAGDETQTVLTATENGYGKRTPIGEYTRHGRGTKGMIAIQTTSRNGKV 795

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG----GISDVICFK 704
              V V   D + ++     L+   + +I EM R  +GV L +  DG    G+  V+   
Sbjct: 796 VGAVLVNPTDEIMLITTGGVLVRTRVAEIREMGRATQGVTLINVDDGSTLSGVRRVVESD 855

Query: 705 ICEGLTW 711
             +    
Sbjct: 856 ADDDGEL 862


>gi|229176170|ref|ZP_04303662.1| DNA gyrase subunit A [Bacillus cereus MM3]
 gi|228607329|gb|EEK64659.1| DNA gyrase subunit A [Bacillus cereus MM3]
          Length = 823

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQSLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|167635125|ref|ZP_02393442.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
 gi|254742122|ref|ZP_05199809.1| DNA gyrase subunit A [Bacillus anthracis str. Kruger B]
 gi|167529599|gb|EDR92349.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
          Length = 823

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|153835279|ref|ZP_01987946.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
 gi|148868215|gb|EDL67361.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
          Length = 879

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/792 (32%), Positives = 395/792 (49%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDE+I +I+N   P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +    + LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 DLGNVASMLERAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ +  +        T         A
Sbjct: 475 DEYKALLDEIAELMHILASTERLMEVIREELEAVRDGYGDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L        G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +  ++ +  V    GD  + +  +  K++ FS D++  M 
Sbjct: 655 KKTPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADEDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|330445625|ref|ZP_08309277.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489816|dbj|GAA03774.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 876

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/792 (32%), Positives = 405/792 (51%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++ +I+I++L+EYI GPDFPT  +I   R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYINDEDITIDQLMEYIPGPDFPTAAMIS-GRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E    G   IVV EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRAKAEIEADKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALD-NGQPKIFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ + ++    R  IL+GL +A  NIDEII ++R    P            
Sbjct: 355 NHRREVVTRRTIYELRKARDRAHILEGLALALANIDEIIELVRRAPTPAEAKAGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +  +++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEAQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L+S ++    I  E+  VKE FS +        +          
Sbjct: 475 EEYKALLDEIAELMHILSSSERLMEVIREELELVKEQFSDARRTEITAASHDIDMEDLIT 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      +A   KE D ++  L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHEGYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L   S    G+ I  ++ L  N+ I        Y++   + + ++ G  
Sbjct: 595 RGRMYWLKVYQLPLASRTARGKPIVNILPLEENERITAILPVREYEADKFVFMATADGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +  E+ +  V    G + + +  +  K++ FS +Q+  M 
Sbjct: 655 KKTPLTDFSRPRSAGIIAVNLRDEDTLIGVDITDGQNDIMLFSKAGKVVRFSEEQVRGMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     +      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGIKLAESDKVVSLIVPHNEGD-VLTVTENGYGKRTELAEYPAKSRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGSVVGA 785


>gi|229035152|ref|ZP_04189098.1| DNA gyrase subunit A [Bacillus cereus AH1271]
 gi|228728218|gb|EEL79248.1| DNA gyrase subunit A [Bacillus cereus AH1271]
          Length = 823

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|323463207|gb|ADX75360.1| DNA gyrase, A subunit [Staphylococcus pseudintermedius ED99]
          Length = 878

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/762 (34%), Positives = 417/762 (54%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSV 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA+  +E  G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 IMRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     PQ++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPQLINLKQALYHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ + ++    R  IL+GL IA  +IDEII IIR  +        + SRF+L+E 
Sbjct: 361 EVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT              + +I +E I + +S+  +I+ L + +         
Sbjct: 481 GD-----DRRTEI--QLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I  +I+L
Sbjct: 534 GVQGMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + ++ I T             L+ V+ KG       S      R GK  +K   ++++  
Sbjct: 594 DQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIA 653

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V    G+ H+ +      L+ F    +  MSR   GV+    +DG     +     +   
Sbjct: 654 VCLTDGEKHILIGTAQASLIRFKETDVRAMSRIAAGVKGIRLRDGDEVIGLDVADDDNQD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +    + Y +  +     L  RGG+G    K   R+G+ +
Sbjct: 714 EILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLV 755



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 14/217 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
               + +  +E   V ++ +G I+        + +     A+ F++ D L          
Sbjct: 602 MIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVCLTDGEK 661

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSS 619
            IL+ +           ++ +      A    I L    +++   V D   +  +LVV+ 
Sbjct: 662 HILIGTAQASLIRFKETDVRAMSRIA-AGVKGIRLRDGDEVIGLDVADDDNQDEILVVTE 720

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSI 675
           KG        +   + R G         E+   +  +  V GD  + VV     ++   +
Sbjct: 721 KGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIRMEV 780

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             I    R  +GVRL    +      +     E    
Sbjct: 781 SNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDI 817


>gi|319893735|ref|YP_004150610.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
 gi|317163431|gb|ADV06974.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
          Length = 878

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/762 (34%), Positives = 418/762 (54%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ETSESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSV 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA+  +E  G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 IMRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     PQ++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPQLINLKQALYHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ + ++    R  IL+GL IA  +IDEII IIR  +        + SRF+L+E 
Sbjct: 361 EVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT              + +I +E I + +S+  +I+ L + +         
Sbjct: 481 GD-----DRRTEI--QLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D++L  +  G+ Y L    +       +   I  +I+L
Sbjct: 534 GVQGMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + ++ I T             L+ V+ KG       S      R GK  +K   ++++  
Sbjct: 594 DQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIA 653

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V    G+ H+ +      L+ F    +  MSR   GV+    +DG     +     +   
Sbjct: 654 VRLTDGEKHILIGTAQASLIRFKETDVRAMSRIAAGVKGIRLRDGDEVIGLDVADDDNQD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +    + Y +  +     L  RGG+G    K   R+G+ +
Sbjct: 714 EILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLV 755



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 14/217 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
               + +  +E   V ++ +G I+        + +     A+ F++ D L          
Sbjct: 602 MIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEK 661

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSS 619
            IL+ +           ++ +      A    I L    +++   V D   +  +LVV+ 
Sbjct: 662 HILIGTAQASLIRFKETDVRAMSRIA-AGVKGIRLRDGDEVIGLDVADDDNQDEILVVTE 720

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSI 675
           KG        +   + R G         E+   +  +  V GD  + VV     ++   +
Sbjct: 721 KGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIRMEV 780

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             I    R  +GVRL    +      +     E    
Sbjct: 781 SNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDI 817


>gi|28898706|ref|NP_798311.1| DNA gyrase subunit A [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839549|ref|ZP_01992216.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810]
 gi|260363695|ref|ZP_05776479.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030]
 gi|260879738|ref|ZP_05892093.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898788|ref|ZP_05907229.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901601|ref|ZP_05909996.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|28806924|dbj|BAC60195.1| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746930|gb|EDM57918.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810]
 gi|308086608|gb|EFO36303.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|308093282|gb|EFO42977.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|308108685|gb|EFO46225.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|308113396|gb|EFO50936.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030]
          Length = 878

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/792 (32%), Positives = 399/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   LL E  ++  +L S ++    I  E+  V++ F+ +        +         A
Sbjct: 475 AEYKELLEEIAELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSADKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V   TG   + +  +  K++ FS D++  M 
Sbjct: 655 KKTSLDQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|253573847|ref|ZP_04851189.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846324|gb|EES74330.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 840

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/756 (33%), Positives = 409/756 (54%), Gaps = 30/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             +    +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMS++G+     FKK
Sbjct: 7   SQIIDRDINVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSDLGMHPDKPFKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGEVIGKYHPHGDSAVYETMVRMAQDFSMRYMLVEGHGNFGSVDGDMAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ ++++ +DF   Y+ E+ EPVV PS+FPNLL NG SGIAVGMAT+IP H
Sbjct: 127 RLSKIAMEMLRDINKETIDFMPNYDGEEQEPVVLPSRFPNLLVNGVSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   ALI NPEIS  +L++YI GPDFPT   I+  R  I ++Y  GRG   +RA
Sbjct: 187 NLGEVIDGVQALIKNPEISSLELMDYIKGPDFPTAAYIL-GRSGIRQAYTTGRGSITMRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE    +  IVV E+PYQV K+RL+EKIAEL+  K+I  + D+RDES      V+ 
Sbjct: 246 KTTIEEHNNKA-RIVVEELPYQVNKARLVEKIAELVREKKIDGITDLRDESDRTGMRVVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++P++++ +++  + +++ F +NM  +     P+++ L  +L  +L H+ EV+ R
Sbjct: 305 ELRRDVNPNVVLNNLYKHTALQSTFGINMLAIV-NNEPKILTLKDVLSHYLQHQVEVVRR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  +IDE+IA+IR  +  +       +RF L+  Q  AI
Sbjct: 364 RTEFDLKKAEARAHILEGLRIALDHIDEVIALIRGSNSDEEAREGLITRFGLSLEQAQAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I+ E + LL +  +   +L + +     I  E++E++E ++    
Sbjct: 424 LDMRLRRLTGLEREKIEDEYNELLQKIAEYREILANEQLVLKIIGEELQEIRERYADE-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT   E++  +++ L + +I +E + + I++ G+I+          K     +  +
Sbjct: 482 ---RRT---EITIGEESILDEDLIPQEEVVITITHTGYIKRLPVTTYRSQKRGGRGVVGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQD 601
             K+ D ++     ++   ++  +  GKAY L A  +        G  I  LI +   + 
Sbjct: 536 DTKDNDFVEHLFVTNSHHYLMFFTDRGKAYRLKAYEIPELGRTARGTPIINLIQIEQGET 595

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +        +D    L   + +G        + I   + G   + +  ++ +  V    G
Sbjct: 596 VNAVIEVERFDDNKYLFFATKQGIVKKTPIEDYINIRKGGLIAVNLREDDTLIDVKLTDG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            + V +       + F    +  M R   GV+  +  +G     +   +  G   +    
Sbjct: 656 NEEVIMGTAQGMSIRFPESDVRSMGRAATGVKGITLDEGDSVIGMDVVVP-GQDVLIVTA 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +           RGG G        ++G  + 
Sbjct: 715 NGYGKRTPISEYRTQSRGGKGIKTINVTEKNGTVVG 750



 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/320 (13%), Positives = 101/320 (31%), Gaps = 19/320 (5%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
            EI     +      +      +T      I  L + + R  +         +       
Sbjct: 484 TEITIGEESILDEDLIPQEEVVITITHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDNDFV 543

Query: 461 IDSLLNSGKQQWNQIACEIREVKEI-FSKSTDLGRRRTTFC------EVSRADKATLQQA 513
               + +            +  +   +         R T        E      A ++  
Sbjct: 544 EHLFVTNSHHYLMFFTDRGKAYRLKAYEIPELGRTARGTPIINLIQIEQGETVNAVIEVE 603

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLS 567
             +        + +G ++              L A++ +E D+L         + +++ +
Sbjct: 604 RFDDNKYLFFATKQGIVKKTPIEDYINIRKGGLIAVNLREDDTLIDVKLTDGNEEVIMGT 663

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
             G +   P  ++ S       +   I L+    ++   V      +L+V++ G      
Sbjct: 664 AQGMSIRFPESDVRSMGRAATGV-KGITLDEGDSVIGMDVVVPGQDVLIVTANGYGKRTP 722

Query: 628 ESEIIANTRKGKTF--LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSR 683
            SE    +R GK    + V+ +    + +KV    + + ++  +  L+  S++ I  M R
Sbjct: 723 ISEYRTQSRGGKGIKTINVTEKNGTVVGLKVVKDEEDLMIITASGTLIRTSMEGISTMGR 782

Query: 684 -GKGVRLQSYKDGGISDVIC 702
             +GV+L + ++      +C
Sbjct: 783 NTQGVKLINIREDDTVATVC 802



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/346 (11%), Positives = 97/346 (28%), Gaps = 8/346 (2%)

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
                +    +   +             ++L    +PQ   +  I       R  V   R
Sbjct: 464 LKIIGEELQEIRERYADERRTEITIGEESILDEDLIPQEEVVITITHTGYIKRLPVTTYR 523

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R       ++      + +L +      +            +               
Sbjct: 524 SQKRGGRGVVGMDTKDNDFVEHLFVTNSHHYLMFFTDRGKAYRLKAYEIPELGRTARGTP 583

Query: 436 LRSLRKLEEYQIKSE--LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           + +L ++E+ +  +         + + +      G  +   I   I              
Sbjct: 584 IINLIQIEQGETVNAVIEVERFDDNKYLFFATKQGIVKKTPIEDYIN--IRKGGLIAVNL 641

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           R   T  +V   D    ++ ++       +      +RS+   +  +  +   EGDS+  
Sbjct: 642 REDDTLIDVKLTDGN--EEVIMGTAQGMSIRFPESDVRSMGRAATGVKGITLDEGDSVIG 699

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    +L+++ +G     P     +    G+ I+ +     N  +V   V      
Sbjct: 700 MDVVVPGQDVLIVTANGYGKRTPISEYRTQSRGGKGIKTINVTEKNGTVVGLKVVKDEED 759

Query: 614 LLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           L+++++ G         I    R   G   + +  ++ +  V +  
Sbjct: 760 LMIITASGTLIRTSMEGISTMGRNTQGVKLINIREDDTVATVCRTD 805


>gi|288554612|ref|YP_003426547.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
 gi|288545772|gb|ADC49655.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
          Length = 855

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 423/760 (55%), Gaps = 30/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              +  VK +++   ++  ++ YA+S I  RA+PD RDG KPVHRRI++AM+E+G+    
Sbjct: 3   EQDQSRVKEINISQEMKSSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNELGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGD+AAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M++++  +L+ +++D +D++D Y+  + EP+V P++FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEAKMSKISMELLRDINKDTIDYQDNYDGSEREPIVMPARFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP H + E+ +A LAL  NP+ISI +L+EYI GPDFPTG  I+  R  I ++Y+ GRG  
Sbjct: 183 IPPHQLGEVIDAVLALSKNPDISIPELMEYIPGPDFPTGAEIL-GRSGIRKAYQTGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE   G   I+V+E+PYQV K++LIEKIAEL+  K+I  + D+RDES  +  
Sbjct: 242 TLRAQTEIEEYK-GKPRILVSELPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  + ++L+ +++  + ++T F +N+  L     P+V+ L   L+ +L H+ +
Sbjct: 301 RIVIELRRDANANVLLNNLYKQTALQTSFGINLLALV-EGQPKVLTLKECLEHYLGHQVQ 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR++F ++  + R  IL+GL IA  ++DE+I++IR+       +  ++ +FSL+  Q
Sbjct: 360 VIRRRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMEQFSLSYEQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I++E   L+A+  ++ ++L  G++    I  E+ EVKE F+
Sbjct: 420 AQAILDMRLQRLTGLERDKIENEYKELIAKIAELKAILADGEKVLEIIREELIEVKEKFN 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                  RRT     S  +     + +I ++ + + +++ G+I+ +        +     
Sbjct: 480 DE-----RRTVI---SMNEDHLEDEDLIPRQNVVITLTHHGYIKRMPISTYRSQRRGGKG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +   + D ++     ++   IL  +  GK Y L    +       +   I  L+ + 
Sbjct: 532 IQGMGTNDDDFMQHLFTTNSHHTILFFTNKGKVYRLKGYEIPELGRTAKGIPIINLLQIE 591

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T      +D    L  ++  G A   + S      R G   + +  ++++  V 
Sbjct: 592 QDETISTVIPIEEFDDNSYLFFLTKHGIAKRTQLSSFANIRRGGLFAITLRGDDELHGVR 651

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
               G  V +  ++   + F    +  M R   GV+  S  D      +   + E    +
Sbjct: 652 LTDGGQEVIIGTKHGMAIRFHETDVRLMGRTAGGVKGISLSDDDHVVGMDI-LEENHQVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +        +  RGG G        ++G  +S
Sbjct: 711 IVTENGYGKRTPIEEYRVQNRGGKGIKTCNITEKNGSLVS 750



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 63/214 (29%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E        +     +       ++  G  +  +  S        L A+  +  D L  
Sbjct: 590 IEQDETISTVIPIEEFDDNSYLFFLTKHGIAKRTQLSSFANIRRGGLFAITLRGDDELHG 649

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    +++ +  G A      ++             I L+ +  +V   + +   +
Sbjct: 650 VRLTDGGQEVIIGTKHGMAIRFHETDVRLMGRTA-GGVKGISLSDDDHVVGMDILEENHQ 708

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRK 669
           +L+V+  G        E     R GK      +   +   + L V      + ++  +  
Sbjct: 709 VLIVTENGYGKRTPIEEYRVQNRGGKGIKTCNITEKNGSLVSLKVVSDEHDIMIITASGI 768

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   ++ I    R  +GV L    +      + 
Sbjct: 769 IIRMHVEGISTTGRNTQGVTLIRVNEKEEVATVA 802


>gi|254507989|ref|ZP_05120117.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16]
 gi|219549097|gb|EED26094.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16]
          Length = 877

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/792 (32%), Positives = 396/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALN-NGQPQLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ F           +         A
Sbjct: 475 DEYKALLEEIAELMHILASTERLMEVIREELETVRDAFGDVRRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIINILPLEEGERITAILPVDEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V    GD  + +  +  K++ F+ D++  M 
Sbjct: 655 KKTSLDQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADEDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|164510803|emb|CAK18884.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
          Length = 878

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/762 (34%), Positives = 417/762 (54%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ETSESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSV 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA+  +E  G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 IMRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     PQ++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPQLINLKQALYHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ + ++    R  IL+GL IA  +IDEII IIR  +        + SRF+L+E 
Sbjct: 361 EVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT              + +I +E I + +S+  +I+ L + +         
Sbjct: 481 GD-----DRRTEI--QLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I  +I+L
Sbjct: 534 GVQGMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + ++ I T             L+ V+ KG       S      R GK  +K   ++++  
Sbjct: 594 DQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIA 653

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V    G+ H+ +      L+ F    +  MSR   GV+    +DG     +     +   
Sbjct: 654 VRLTDGEKHILIGTAQASLIRFKETDVRAMSRIAAGVKGIRLRDGDEVIGLDVADDDNQD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +    + Y +  +     L  RGG+G    K   R+G+ +
Sbjct: 714 EILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLV 755



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 14/217 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
               + +  +E   V ++ +G I+        + +     A+ F++ D L          
Sbjct: 602 MIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEK 661

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSS 619
            IL+ +           ++ +      A    I L    +++   V D   +  +LVV+ 
Sbjct: 662 HILIGTAQASLIRFKETDVRAMSRIA-AGVKGIRLRDGDEVIGLDVADDDNQDEILVVTE 720

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSI 675
           KG        +   + R G         E+   +  +  V GD  + VV     ++   +
Sbjct: 721 KGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIRMEV 780

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             I    R  +GVRL    +      +     E    
Sbjct: 781 SNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDI 817


>gi|238760197|ref|ZP_04621343.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
 gi|238701576|gb|EEP94147.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
          Length = 884

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LALI++  I+I+ L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLALIEDENITIDGLMEFIPGPDFPTAA-IINGRRGIDEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYVRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKEILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVAAMLERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE ++ +        T         
Sbjct: 475 LDEYKELLTLIAELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|116251375|ref|YP_767213.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256023|emb|CAK07104.1| putative topoisomerase IV subunit [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 751

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/739 (65%), Positives = 618/739 (83%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +++++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+
Sbjct: 13  DDHIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPNSAFR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE
Sbjct: 73  KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++MT V+EL+L+G+D+DAVDFRDTY+E +SEPVV P  FPNLLANG+SGIAVGMATSIPS
Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPS 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII+++RESI+ESYR GRGGFRVR
Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDNRESIIESYRTGRGGFRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+R+VL
Sbjct: 253 AKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRVVL 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL 
Sbjct: 313 VPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVLKEWLDHRREVLQ 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS FR+ AIDRR+EIL GLL+AYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN
Sbjct: 373 RRSRFRLAAIDRRLEILSGLLVAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LRKLEE++I+ E D L  EK +I++LL+S  +QW  +A EI EVK+ F+K+T++G
Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIEALLSSDDKQWQTVAWEIGEVKKKFAKATEVG 492

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRT F +    D+  +QQAMIEKEPITVVIS +GWIR+LK H  D +AL FKEGD LKI
Sbjct: 493 RRRTQFADAPETDEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTAALTFKEGDGLKI 552

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q ++TAFV+D + K
Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIIVDMDNDQAVLTAFVHDPSRK 612

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L+VS+ GN F+V E+E++ANTRKGK  + V   E+ +L+V V+GDHVAVVGENRKLL+F
Sbjct: 613 QLIVSTAGNGFVVPEAELVANTRKGKQIMNVGLPEETQLLVPVSGDHVAVVGENRKLLVF 672

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + Q+PEMSRGKGVRLQ YKDGGISDV CF I +GL W DSAGR++ +S+++L+ WL  R
Sbjct: 673 PLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISDGLVWEDSAGRTFTKSKDELVEWLADR 732

Query: 734 GGVGSLVPKGFPRSGKFLS 752
              G  VPKGFPRSGKF  
Sbjct: 733 ATAGRTVPKGFPRSGKFAG 751


>gi|239996349|ref|ZP_04716873.1| DNA gyrase, A subunit [Alteromonas macleodii ATCC 27126]
          Length = 904

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/812 (32%), Positives = 395/812 (48%), Gaps = 71/812 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+ 
Sbjct: 1   MSDNAK----EILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELK 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            DF   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    +ALI +P I+I+ L+ +I GPDFPT  +I   R+ I ++YR 
Sbjct: 177 GMATNIPPHNLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAMIS-GRKGIEDAYRT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E    G   IVV EIPYQV K+RLIEKIAEL+  KRI  +  +RDES
Sbjct: 236 GRGKIYLRAKAEIETDSNGKETIVVNEIPYQVNKARLIEKIAELVKEKRIEGVSALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R+   ++L+  ++  + ++T F +NM  L     P+V  L   L+ ++
Sbjct: 296 DKDGMRIVIEVKRNESAEVLLNHLYANTQLQTVFGINMVALD-NGQPKVFNLKETLECFI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL IA  NID II +I+    P            
Sbjct: 355 LHRREVVTRRTVFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGDVAQMLERAGDDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL    ++  +LNS ++    I  E+ +V++ F           +          
Sbjct: 475 EEYKQLLEIIAELLHILNSPERLMEVIQEELEKVRDEFGDERRTEITAASHDIDIEDLIE 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 QEDVVVTLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDFIERLLVANTHDHILCFST 594

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L        G  I  ++ L  N+ I        ++    +L+ ++ G  
Sbjct: 595 RGRLYWLKVYQLPFASRNARGRPIVNILPLEENERITAILPIKEFEEGKFVLMATANGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID------ 676
              + S        G   + ++  +++  V    G D + +  +  K++ F+        
Sbjct: 655 KKTDLSLYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSET 714

Query: 677 --------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
                          +  M R   GVR    +DG     +     +G   + +    + +
Sbjct: 715 GEVKRDPETGEELLALRPMGRTATGVRGIRLQDGQKVVSLIVPKGDGP-ILTATENGFGK 773

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      R   G +  K   R+GK + +
Sbjct: 774 RTPLEDYPAKSRATQGVVSIKVSERNGKVVGA 805


>gi|156975008|ref|YP_001445915.1| DNA gyrase subunit A [Vibrio harveyi ATCC BAA-1116]
 gi|156526602|gb|ABU71688.1| hypothetical protein VIBHAR_02730 [Vibrio harveyi ATCC BAA-1116]
          Length = 878

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/792 (32%), Positives = 395/792 (49%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAFINNEEITIDQLMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDE+I +I+N   P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +    + LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 DLGNVASMLERAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ +  +        T         A
Sbjct: 475 DEYKALLDEIAELMHILASTERLMEVIREELEAVRDGYGDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L        G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +  ++ +  V    GD  + +  +  K++ FS D++  M 
Sbjct: 655 KKTPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADEDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|269102944|ref|ZP_06155641.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162842|gb|EEZ41338.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 873

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/792 (32%), Positives = 405/792 (51%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN EI+I++L+EYI GPDFPT  +I   R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMIS-GRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEADKNGRETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 NHRREVVTRRTIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +  + + LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 ELGNVAAMLERAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L+S ++    I  E+  VKE F+ +        T          
Sbjct: 475 DEYKTLLEEIAELLHILSSAERLMEVIREELELVKEQFNDARRTEITAATHDIDLEDLIN 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      +A   K+ D ++  L A+T D IL  ST
Sbjct: 535 QEDVVVTLSHEGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L   S    G+ I  ++ L  N+ I        Y++   + + ++ G  
Sbjct: 595 RGRMYWLKVYQLPLASRTARGKPIVNILPLEENERITAILPVKEYEADKFVFMATADGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +  E+ +  V    G + + +  +  K++ F+  Q+  M 
Sbjct: 655 KKTPLTDFSRPRSAGIIAVNLRDEDTLIGVDITDGNNDIMLFSKAGKVVRFNEGQVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     +      +     +G   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGIKLAESDNVVSLIVPHNDGD-VLTVTENGYGKRTELEEYPAKSRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGSVVGA 785


>gi|300704758|ref|YP_003746361.1| DNA gyrase subunit A [Ralstonia solanacearum CFBP2957]
 gi|299072422|emb|CBJ43767.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum CFBP2957]
          Length = 885

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/796 (30%), Positives = 385/796 (48%), Gaps = 63/796 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E
Sbjct: 130 IAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLRE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NPE ++++L+E I  PDFPT G I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLRNPEATVDELIELIPAPDFPTAG-IIYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KR+  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVD-GQPRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  IL+GL +A  NIDE IAII+    P                        
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVRDMLSRA 427

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F                +          
Sbjct: 488 VMAQIADLLDILARPERITAIIVEELTLIRSEFGDERRSQIEHNATELDTEDLITPQDLV 547

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 548 VTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLY 607

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    +        G  I  +  L+  + I        +D    + + +SKG       
Sbjct: 608 WLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKGTVKKTAL 667

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E     + G   + +   + +       G H V +  +  K + F  + +  M R  +G
Sbjct: 668 TEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG 727

Query: 687 VRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           VR  + +DG     +     E           + + +    Y +           RG  G
Sbjct: 728 VRGMNLEDGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYTRHGRGTKG 787

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK +++
Sbjct: 788 MIAIQTSERNGKVVAA 803



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 661 TVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP 720

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L   Q ++   V  +             +L  +  G       SE  
Sbjct: 721 MGRQARGVRGM-NLEDGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYT 779

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     + + +   +    D + ++     L+   +D+I EM R  +GV
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGV 839

Query: 688 RLQSYKDG 695
            L +  +G
Sbjct: 840 TLIAVGEG 847


>gi|238794992|ref|ZP_04638588.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909]
 gi|238725695|gb|EEQ17253.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909]
          Length = 890

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LALI++  I+IE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLALIEDENITIEGLMEFIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANS 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   R+ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEAEYGIRDGRYFLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L +  +    I  E+  +KE ++ +        T         
Sbjct: 475 LDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|318606419|emb|CBY27917.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 885

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  I+IE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVGL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVAAMLERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE+++ +        T         
Sbjct: 475 LDEYKELLTVIAELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|237747594|ref|ZP_04578074.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13]
 gi|229378956|gb|EEO29047.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13]
          Length = 877

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/807 (30%), Positives = 400/807 (49%), Gaps = 70/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               +   ++SL   + + YL YA+S I  RA+PD+RDG KPVHRR++  M EM   +  
Sbjct: 2   DQFAKETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNAWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + K AR+VGEV+GK HPHGDQS+YD+LVR+AQ F  RY L+ GQGNFG+IDGD+AAA R
Sbjct: 62  PYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ +++E +L  +D++ +DF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTECRLDRISEEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+   AL L+  P+ +I++L++ I  PDFPTGG I+     + E YR GRG  
Sbjct: 182 IPPHNLVEVINGALQLLHQPDCTIDELIDIIPAPDFPTGG-IIYGVSGVREGYRTGRGRV 240

Query: 251 RVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   EE GR G   I+V E+PYQV K  L+E+IAE +  K++  + DIRDES +  
Sbjct: 241 VMRAKTHFEEYGREGRQAIIVDELPYQVNKKNLLERIAESVREKKLDGISDIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R+  P++++ ++F  + ++  F +NM  L     P+++ L  +L+ +LAHRR
Sbjct: 301 MRVVIELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVD-GQPKLLNLKQMLECFLAHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------- 414
           EV+ RR+ F ++    R  IL+GL +A  NID+ IAIIR    P                
Sbjct: 360 EVVTRRTIFELRKARERGHILEGLAVALANIDDFIAIIRAAPTPPIARQELMSRSWNSSL 419

Query: 415 -----------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L+E Q   IL +RL+ L  LE+ 
Sbjct: 420 VKSMLERTGADHANSVDDFRPEGLPKMFGIQSDGLYKLSEEQATEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E  +++A+  ++  +L   ++    I  E+++V   + +     RR     E+   
Sbjct: 480 KILNEYGDVMAQIAELLDILAKPERVLAIIDDELKQVIGEYGEKAKDVRRS----EIELN 535

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I  + + V +S+ G+ +S         K       A   KE D +     A
Sbjct: 536 ASDLETEDLITPQDMVVTLSHTGYFKSQPLSEYRAQKRGGRGRMATATKEDDWVDQLFIA 595

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------Y 608
           +T D IL  S  G+ Y L    +        G+ I  +  L  ++ I            +
Sbjct: 596 NTHDYILCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGDEKITVILPLSGENRNF 655

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
                + + +S+G       ++     + G   + +   + +       G H V +  + 
Sbjct: 656 PDNHYIFMATSQGTVKKTSLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDA 715

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            K + F  + +  M R  +GVR  + +D      +     E  + + +    + +     
Sbjct: 716 GKAVRFDENDVRPMGRTARGVRGMNLEDDQKVIAMLVAGDESQSVLTATENGFGKRTPIA 775

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  +   R+GK +++
Sbjct: 776 EYTRHGRGTKGMIAIQTSERNGKVVAA 802



 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 79/262 (30%), Gaps = 14/262 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       +   +  +    S   +   I                   + T 
Sbjct: 594 IANTHDYILCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMF---------PLQGDEKITV 644

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              +S  ++       I        +               + A+   EGD L  A    
Sbjct: 645 ILPLSGENRNFPDNHYIFMATSQGTVKKTSLTDFSNPRKAGIIAVGLDEGDYLIGAALTD 704

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               ++L S  GKA      ++         ++ +   +  + I      D +  +L  +
Sbjct: 705 GKHDVMLFSDAGKAVRFDENDVRPMGRTARGVRGMNLEDDQKVIAMLVAGDESQSVLTAT 764

Query: 619 SKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVT-GDHVAVVGENRKLLIFS 674
             G       +E   + R  KG   ++ S    K+     V   D + ++     L+   
Sbjct: 765 ENGFGKRTPIAEYTRHGRGTKGMIAIQTSERNGKVVAATLVNENDEIMLITTGGVLIRTR 824

Query: 675 IDQIPEMSRG-KGVRLQSYKDG 695
           + ++ EM R  +GV L + ++G
Sbjct: 825 VSEVREMGRATQGVTLIAVEEG 846


>gi|332162346|ref|YP_004298923.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325666576|gb|ADZ43220.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 885

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  I+IE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVAAMLERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE+++ +        T         
Sbjct: 475 LDEYKELLTVIAELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|157371506|ref|YP_001479495.1| DNA gyrase subunit A [Serratia proteamaculans 568]
 gi|157323270|gb|ABV42367.1| DNA gyrase, A subunit [Serratia proteamaculans 568]
          Length = 882

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/793 (33%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G
Sbjct: 1   MSD----LAREITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVINGCLAYIDDENISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYLRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL+ +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-HQGQPKLLNLKDILQAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL     +  +L +  +    I  E+  +KE ++          T         
Sbjct: 475 LDEYKELLTAIAALIFILENPDRLMEVIREELVAIKEQYNDGRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 ++       G   + ++  +++  V    G + V +   N K++ F   Q+  M
Sbjct: 655 VKKTALTDFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +  +G     +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLGEGDSVISLIVPRGEGD-ILTVTQNGYGKRTAVTEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G+ + +
Sbjct: 774 IKVSERNGQVVGA 786


>gi|242238485|ref|YP_002986666.1| DNA gyrase subunit A [Dickeya dadantii Ech703]
 gi|242130542|gb|ACS84844.1| DNA gyrase, A subunit [Dickeya dadantii Ech703]
          Length = 878

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/793 (33%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMARIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA ID+  IS+E L+ YI GPDFPT   I+  +  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIDDENISVEGLMTYIPGPDFPTAA-IINGKRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++  ++  + M+  F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNHLYSQTQMQVSFGINMVAL-HQGQPKLMTLKEILAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL +A +NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARERAHILEGLAVALVNIDPIIELIRHASTPADAKAALVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGSVAAMLERAGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +   +  +L S ++    I  E+  +KE ++          +         
Sbjct: 475 LDEYKELLTQIAALLFILRSPERLMEVIREELEAIKEQYNDQRRTEITHNSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDQLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y L    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWLKVYQLPEASRGARGRPIINLLPLEQNERITAILPVREYEEGLNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ FS   +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  + +D      +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLQDDDRVVSLIVPRGEGD-ILTVTENGYGKRTAINDYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVSERNGNVVGA 786



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 65/169 (38%), Gaps = 17/169 (10%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV  +   +R++   +  +  ++ ++ D +   +       IL ++ +G
Sbjct: 692 NEVMLFSAEGKVVRFSESAVRTMGRTATGVRGINLQDDDRVVSLIVPRGEGDILTVTENG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                   +  +     + +  +     N ++V A   D+T ++++++  G       SE
Sbjct: 752 YGKRTAINDYPTKSRATKGVISIKVSERNGNVVGAVQVDTTDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSS---------------EEKMKLVVKVTGDHVA 662
           +    R   G T ++ +                ++++  VV V G+ +A
Sbjct: 812 VSIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDDELDGVVAVDGEELA 860


>gi|328543510|ref|YP_004303619.1| DNA topoisomerase IV subunit A [polymorphum gilvum SL003B-26A1]
 gi|326413254|gb|ADZ70317.1| DNA topoisomerase IV subunit A [Polymorphum gilvum SL003B-26A1]
          Length = 745

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/739 (60%), Positives = 570/739 (77%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ V+LR ALEERYLAYALSTI  RA+PD+RDG KPVHRR+++AM  + LD GA 
Sbjct: 2   IPPGGIEGVNLREALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGAG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKK AR+VG+VIGK HPHGDQ+VY++LVRLAQ F QRYPLI GQGNFGNIDGDSAAA RY
Sbjct: 62  FKKCARVVGDVIGKYHPHGDQAVYEALVRLAQDFAQRYPLIDGQGNFGNIDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +L G+DEDAVDFR+TY+ ED EP+V P  FPNLLANG+SGIAVGMATSI
Sbjct: 122 TEARLTDIARRLLDGLDEDAVDFRETYDGEDREPIVLPGGFPNLLANGSSGIAVGMATSI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN  E+CEAA  LI NP      LL++I GPDFPTGG++V+    ++E+Y  GRG FR
Sbjct: 182 PPHNAFELCEAAQHLIRNPNADTRALLQFIKGPDFPTGGLLVDDPVGLLETYETGRGSFR 241

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRARW +E++GRG W +VVTEIPYQVQKSRLIEKIAEL++A+++PLL+DIRDESAEDVRI
Sbjct: 242 VRARWAIEDLGRGQWVVVVTEIPYQVQKSRLIEKIAELLMARKLPLLDDIRDESAEDVRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++R++D  LLMES+F L+D+E+RFPLNMNVLS G+VP VM +  +L+EWL HR+ V
Sbjct: 302 VLVPRSRNVDAALLMESLFKLTDLESRFPLNMNVLSHGKVPMVMGVRQVLREWLDHRKAV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RRS  R+  I+ R+E+L G L+AYLN+DE+I IIR ED+PK  ++  F LT+ Q +AI
Sbjct: 362 LIRRSQHRLDQIEHRLEVLDGYLVAYLNLDEVIRIIREEDEPKAELMRTFGLTDVQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RLRSLRKLEE +I+ E D L AE++++ +LL S  +QW +I  +I EV + +   T 
Sbjct: 422 LNMRLRSLRKLEEMEIRKEHDKLSAERDELKALLGSEARQWTRIGKDIAEVGKAYGPETP 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           LGRRRT F E    D   LQQAMIEKEPITVVIS++GWIR+LK H  DLS+L FK+GD L
Sbjct: 482 LGRRRTGFSEAPGHDVEDLQQAMIEKEPITVVISDKGWIRALKGHQQDLSSLAFKQGDKL 541

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K+A HA TTD+IL+ ST GK +TL A  L  GRGHGE I+L++D+   QD+V+AFV+   
Sbjct: 542 KLAFHAETTDKILVFSTGGKFFTLGADRLPGGRGHGEPIRLMVDMEEGQDVVSAFVHKPG 601

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
            KLLV S +   F+V E++++ANTRKGK  L +++  +  L +   GDHVAV+G+NRKLL
Sbjct: 602 RKLLVASDEARGFVVPETDVVANTRKGKQVLNLTAPNEAVLCIAAEGDHVAVIGQNRKLL 661

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F + Q+PEM RG+GVRLQ Y+DG ++D + F   +GLTWIDS+GRS+NRS +DL  W G
Sbjct: 662 VFPLAQVPEMGRGRGVRLQRYRDGHLADAVVFDGAQGLTWIDSSGRSFNRSLDDLADWRG 721

Query: 732 KRGGVGSLVPKGFPRSGKF 750
            RG  G L P GFPRS +F
Sbjct: 722 DRGQAGRLPPTGFPRSNRF 740


>gi|302388607|ref|YP_003824428.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
 gi|302199235|gb|ADL06805.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
          Length = 809

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/755 (33%), Positives = 408/755 (54%), Gaps = 29/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V++   +++ Y+ YA+S I  RA+PD+RDG KP+HRRI++AMSE+ L      +KS
Sbjct: 7   KVVPVTIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPIHRRILYAMSELNLTPDRPHRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVG+V+GK HPHGD ++YD++VRLAQ F  RYPLI G GNFG+IDGD  AA RYTEAR
Sbjct: 67  ATIVGDVMGKYHPHGDAAIYDAMVRLAQDFSIRYPLIDGHGNFGSIDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D+D VDF   +++   EP V PS+FPNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 LSRIALEMLSDIDKDTVDFIPNFDDTLKEPAVLPSRFPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + +I+NP+++ ++L+  I GPDFPTGGII+  RE I E Y  GRG   VRA+
Sbjct: 187 LSEVIDGVVMMIENPDVTSQELMAAIKGPDFPTGGIIL-GREGIREMYTTGRGSIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY V K+RLIEKIAEL+  K +  + D+RDES  +   ++  
Sbjct: 246 ATIEPMEGGKQRIVVTEIPYMVNKARLIEKIAELVRDKHLDGISDLRDESDRNGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++  ++  + M+  F   M  L     PQV+ L  ++  +L H++EV+ RR
Sbjct: 306 LKRDANAHVILNQLYKHTQMQVTFGAIMLALV-ENKPQVLTLREMIYHYLRHQQEVVVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAIL 432
           + + +   + RV IL+GL IA  ++DE+IA+IR           ++  F LTE Q   IL
Sbjct: 365 TKYELARAEERVHILEGLRIALNHLDEVIALIRKSKDVPTAREGLMKNFGLTEKQAQVIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E   LL + +    +L   K  +  I  E+ ++KE F      
Sbjct: 425 DMRLQRLTALERQKIEDEYRELLEKIDYYKRVLGDEKLVFAIIKEELLKIKERFGDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALH 544
             RRT         K   +Q +I +E + + ++  G+++ +        K     ++ + 
Sbjct: 482 --RRTRIV---AEVKDFDEQDLIPEEDVVITMTYMGYVKRMPLSSYRSQKRGGKGVTGIT 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
            +E D ++  L A T   +L  +  G  Y L A  +       +  AI  L+ L   + +
Sbjct: 537 TREEDFVERILVATTHHVVLFFTNQGNVYRLKAHEIPEAGRTAKGTAIVNLLPLKPQEKV 596

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TG 658
                   +     L++V+ +G       SE  ++ + G   + ++S +++  V  V   
Sbjct: 597 NAVIPIKDFGEASYLVMVTKRGLVKKTLLSEYESSRKTGIIAITLTSGDELIGVKLVGKK 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D + +   +   + FS++ +    R  +GV+  +  +G     +      G   +    +
Sbjct: 657 DELILGTSHGMSIRFSVEDVTPTGRTARGVKAITLGEGDEVASMDVTSV-GSDVLVITEK 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +        +  RGG G +  +    +G+ + 
Sbjct: 716 GFGKRTPLDEYRIQTRGGRGIITQRVTDTTGRLVG 750



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 6/156 (3%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             D ++L ++ G +      ++         +   I L    ++ +  V      +LV++
Sbjct: 655 KKDELILGTSHGMSIRFSVEDVTPTGRTARGV-KAITLGEGDEVASMDVTSVGSDVLVIT 713

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKV-TGDHVAVVGENRKLLIFS 674
            KG        E    TR G+  +     +   ++  +  V  GD + +   +  ++   
Sbjct: 714 EKGFGKRTPLDEYRIQTRGGRGIITQRVTDTTGRLVGLRVVAEGDDIILCTASGMMIRLE 773

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           +  I  MSR  +GV L   ++G     +        
Sbjct: 774 VSGISSMSRNTRGVTLMKLEEGDQVSAVAVIRESED 809



 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 2/125 (1%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD +           +L+++  G     P          G  I      +
Sbjct: 684 RGVKAITLGEGDEVASMDVTSVGSDVLVITEKGFGKRTPLDEYRIQTRGGRGIITQRVTD 743

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVK 655
               +V   V      +++ ++ G    +E S I + +R   G T +K+   +++  V  
Sbjct: 744 TTGRLVGLRVVAEGDDIILCTASGMMIRLEVSGISSMSRNTRGVTLMKLEEGDQVSAVAV 803

Query: 656 VTGDH 660
           +    
Sbjct: 804 IRESE 808


>gi|269963959|ref|ZP_06178268.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
 gi|269831302|gb|EEZ85452.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
          Length = 879

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/792 (32%), Positives = 394/792 (49%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDE+I +I+N   P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +    + LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 DLGNVASMLERAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ +           T         A
Sbjct: 475 DEYKALLDEIAELMHILASTERLMEVIREELEAVRDGYGDVRRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L        G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +  ++ +  V    GD  + +  +  K++ FS D++  M 
Sbjct: 655 KKTPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADEDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|255527580|ref|ZP_05394444.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|296186778|ref|ZP_06855179.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|255508713|gb|EET85089.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|296048492|gb|EFG87925.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
          Length = 823

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 415/760 (54%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     
Sbjct: 2   FNEGKILPVDISHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPDKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VYD+LVRLAQ F  RY L++G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVNGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++   +L+ ++++ VDF   ++ E+ EP V P++FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMNKITLEMLRDINKNTVDFVPNFDGEEQEPSVIPARFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+      LIDNPE++I +L+  I GPDFPT GII+  +  I ++Y  GRG   
Sbjct: 182 PPHNLTEVINGISMLIDNPEVTITELMTEIKGPDFPTAGIIL-GKLGIRDAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +EE   G   I+VTEIPYQV K++LIE IA+L+  K+I  + DIRDES  +   
Sbjct: 241 VRAKTDIEEEK-GRHRIIVTEIPYQVNKAKLIESIADLVKDKKIEGISDIRDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + M+  F + M  L     P+V+ L  IL  +L  ++EV
Sbjct: 300 IVIELKRDANPNVILNQLYKHTKMQDTFGIIMLALV-NNKPEVLNLKQILVHYLEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR+    +      ++ F+L+E Q 
Sbjct: 359 IRRRTKFDLDKALARAHILEGLRIALDHIDEVINLIRSSKNGEEAKNGLMNSFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  +I++E   L      +  +L   +     I  E+ E+K  +  
Sbjct: 419 QAILDMRLQRLTGLEREKIENEYKELENTIAYLKDVLAKEELVLKIIKEELTEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT   E+ + D     + +I+++ + V +++ G+I+          K     +
Sbjct: 479 -----DRRT---EIQKNDNEISIEDLIQEQEVVVTLTHAGYIKRIAADTYSAQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNH 598
            A+  KE D ++      T + IL  +  G+ Y L    L       + +    L+ +  
Sbjct: 531 QAMTTKEDDFVEHMFVTSTHNNILFFTNRGRVYKLKGYELPDAGRTAKGVNLINLLPIET 590

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I        +D T   ++ + +G     + S+  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQAVITFKEFDKTNYFIMGTRQGLIKKTQVSQYSSIRKNGLNAINLREDDELIGVRM 650

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
            TG+  + V  +N   + F+   +  M R   GV+  + +   I+  +   +CEG   + 
Sbjct: 651 TTGESEILVFTKNGYAIRFNERDVRPMGRTATGVKAITLRKEDIAVAMDI-VCEGQDVLV 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +          +RGG G +  K   ++G  + +
Sbjct: 710 ISENGFGKRTPVSEYTPHRRGGKGMITYKITEKTGAIVGA 749



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 12/215 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E +   +A +     +K    ++ + +G I+  +           L+A++ +E D L 
Sbjct: 587 PIETNEKIQAVITFKEFDKTNYFIMGTRQGLIKKTQVSQYSSIRKNGLNAINLREDDELI 646

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     IL+ + +G A      ++         +   I L      V   +     
Sbjct: 647 GVRMTTGESEILVFTKNGYAIRFNERDVRPMGRTATGV-KAITLRKEDIAVAMDIVCEGQ 705

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENR 668
            +LV+S  G       SE   + R GK  +     EK   +     V   D + +V  + 
Sbjct: 706 DVLVISENGFGKRTPVSEYTPHRRGGKGMITYKITEKTGAIVGARVVKDEDEMMLVNSSN 765

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  ++  I   SR   GV L    +      I 
Sbjct: 766 VAIRLNVSGISTTSRNAMGVTLMRTDEEQKVVAIA 800


>gi|70725007|ref|YP_251921.1| DNA gyrase subunit A [Staphylococcus haemolyticus JCSC1435]
 gi|68445731|dbj|BAE03315.1| DNA gyrase (topoisomerase II) subunit A [Staphylococcus
           haemolyticus JCSC1435]
          Length = 899

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 403/762 (52%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   DLPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDLSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+MT++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L L  NP+++I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++RAR  +EE G G   IVVT+IPYQV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRARAEIEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  + ++++ +++  + ++T F +NM  L     P+++ L   L E+L H++
Sbjct: 302 VRVVIDVRKDANANVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKQALVEYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  +        +  RF L+E 
Sbjct: 361 TVVRRRTEYNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++ +L   +     +  E+ ++KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIENEYNELLGYISELEEILADDEVLLQLVRDELTDIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQHRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++++ I T        D    L+  +  G       S      + GK  +    ++++  
Sbjct: 594 DNDETISTMIAVRNLEDEDSYLVFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V    G+   ++   +  L+ F+   +  + R   GVR  S ++  +   +     +   
Sbjct: 654 VRLTDGNQDILIGTSHASLIRFAETSLRPLGRTAAGVRGISLREDDVVVGLDVAHADSED 713

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G    K   R+G  +
Sbjct: 714 GVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNIV 755



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 9/119 (7%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVV 664
           DS   +LVV+  G       SE   + R GK      +   +   + +      + + +V
Sbjct: 710 DSEDGVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNIVCITTVNGEEDLMIV 769

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG----ISDVICFKICEGLTWIDSAGRS 718
             +  ++   ++ I +  R  +GVRL    D      ++ VI     E  T        
Sbjct: 770 TNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEAAQTENG 828



 Score = 45.1 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA + D +L+++ +G     P          G+ I+       N +IV     +    L+
Sbjct: 708 HADSEDGVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNIVCITTVNGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV---TGDHV---AVVGEN 667
           +V++ G    +E  +I  N R   G   +K+  ++ +  V KV   T D     A   EN
Sbjct: 768 IVTNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEAAQTEN 827

Query: 668 R 668
            
Sbjct: 828 G 828


>gi|28209862|ref|NP_780806.1| DNA gyrase subunit A [Clostridium tetani E88]
 gi|28202297|gb|AAO34743.1| DNA gyrase subunit A [Clostridium tetani E88]
          Length = 813

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/760 (31%), Positives = 400/760 (52%), Gaps = 18/760 (2%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + ++N+    E  V  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E
Sbjct: 2   NYMNNN----EGKVLEVDIKQEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYE 57

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    +++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DG
Sbjct: 58  LGLSPEKSYRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDG 117

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTEA+M ++   +L+ ++++ VDF   ++  + EP V PS+FPNLL NG+SGI
Sbjct: 118 DSAAAMRYTEAKMGKITIEMLRDINKNTVDFTPNFDGSEKEPSVIPSRFPNLLVNGSSGI 177

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +    LI++P+ +I +L+  I GPDFPT G I+  +  I  +Y
Sbjct: 178 AVGMATNIPPHNLCEVIDGINMLIEDPDTTILELMSKIKGPDFPTAG-IIMGKSGIRSAY 236

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +RA+  +EE   G + I+VTE+PYQV K++LIE +AEL+  KRI  + DIRD
Sbjct: 237 ETGRGKVIMRAKAEIEEEK-GRYRIIVTELPYQVNKAKLIENMAELVKDKRIDGISDIRD 295

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   ++    R  +P++++  ++  + M+  F + M  L     P+V+ L  IL  
Sbjct: 296 ESDREGMRIVVEIKRDSNPNVVLNQLYKHTKMQDTFGVIMIALVD-NEPKVLNLKEILVN 354

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSR 420
           ++  ++E++ RR+ F +     R  IL+GL IA  +IDE+I++IR+           +++
Sbjct: 355 YIEFQKEIIRRRTKFDLDKALARAHILEGLRIALDHIDEVISLIRSSKNADEARNGLMTK 414

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSLTE Q  AIL++RL+ L  LE  +I+ E + L+   + +  +LN+       I  E+ 
Sbjct: 415 FSLTEKQAQAILDMRLQRLTGLERDKIEEEYNQLMETIKYLRDILNNEDLVLKIIKEELH 474

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           E+K  +                        +  +       +   +     S K     +
Sbjct: 475 EIKNKYGDERKTEIELNINEISIEDLIEEEEVVVTLTNSGYIKRISSDAYSSQKRGGKGI 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNH 598
            A+  KE D ++      T   +L  +  GK Y L A  +       +      L+ ++ 
Sbjct: 535 QAMTTKEDDFVERVFITSTHSDLLFFTNIGKVYKLKAYEIPEAGRTAKGTNIVNLLPVDA 594

Query: 599 NQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ +              L++ + +G       ++     + G   + +  E+++  V  
Sbjct: 595 NEHVREVIALKKDLEEGYLIIGTKQGLIKKTSLNQFKNIRKNGIIAINLKDEDELLKVKV 654

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             GD  + +V +N   + FS   +  M R   GV+  S +   ++  +   + E    + 
Sbjct: 655 TRGDAEIIIVTQNGYAIRFSEKDVRPMGRNSTGVKAISLRKDDVAVSMDIVV-EDEYVLT 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +        L  R G G +  +   ++GK +S+
Sbjct: 714 VTENGFGKRTLASEYTLQNRNGKGLITHRVTDKTGKIVSA 753



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 7/154 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I++++ +G A      ++     +   +   I L  +   V+  +      +L V+  G 
Sbjct: 661 IIIVTQNGYAIRFSEKDVRPMGRNSTGV-KAISLRKDDVAVSMDIVVEDEYVLTVTENGF 719

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                 SE     R GK  +     +K   +         D + ++  +   +   +  +
Sbjct: 720 GKRTLASEYTLQNRNGKGLITHRVTDKTGKIVSARVAKDSDELMLINSSNTAIRICVSDV 779

Query: 679 PEMSR-GKGVRLQS-YKDGGISDVICFKICEGLT 710
              +R   GV L   Y++  I  +      E   
Sbjct: 780 SITNRSAMGVTLMRTYEEEKILAIAKISSDEDSE 813


>gi|328474729|gb|EGF45534.1| DNA gyrase subunit A [Vibrio parahaemolyticus 10329]
          Length = 878

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/792 (32%), Positives = 399/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   LL E  ++  +L S ++    I  E+  V++ F+ +        +         A
Sbjct: 475 AEYKELLEEIAELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSADKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V   TG   + +  +  K++ FS D++  M 
Sbjct: 655 KKTSLDQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|124267425|ref|YP_001021429.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1]
 gi|124260200|gb|ABM95194.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1]
          Length = 873

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/803 (30%), Positives = 389/803 (48%), Gaps = 62/803 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D+  VDF   Y+  + EP+V P++ PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLADLDKGTVDFGPNYDGSEKEPLVMPTRLPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A L L+ NPE SI++L+E I  PDFPT G I+     + E YR GRG  
Sbjct: 182 IPPHNLNETVDACLHLLKNPEASIDELMEIIPAPDFPTAG-IIYGLNGVREGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V EIPYQV K  L+E++AEL+  K++  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDKGARQSIIVDEIPYQVNKKTLLERMAELVHEKKLEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  L     P++  L  +++ +L HRR
Sbjct: 301 MRVVIELKRGEVPEVVLNNLYKQTQLQDSFGINMVALVD-GQPKLCNLRDLVEVFLEHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------- 412
           EV+ RR+ F ++    R  +L+GL +A  NIDE I II+N                    
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIEIIKNSPTPPLAKQGLMDKSWDSSL 419

Query: 413 ---------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L+++Q   IL +RL+ L  LE+ 
Sbjct: 420 VREMLVRAASDTPGGRDAFRPEGLPAVYGMQADGLYRLSDDQAQEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT---FCEV 502
           +I  E   ++A    +  +L+  ++    I  E+  VK+ F ++    RR        E+
Sbjct: 480 KIIGEYKEVMAHIADLLDILSKPERVTTIIGEELVAVKQEFGQTKLGARRSVIEHNVQEL 539

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
              D  T    ++       V S         +       A   K+ D ++    A+T D
Sbjct: 540 GTEDLITPTDMVVTLSHTGYVKSQPLAEYRAQRRGGRGKQATQTKDDDWIEQLFIANTHD 599

Query: 562 RILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTC 612
            +L  S  G+ Y L    +        G+ I  +  L  N+ I            + S  
Sbjct: 600 WMLCFSNRGRVYWLKVWEVPQGGRAARGKPIVNMFPLQPNEKITVVLPLTGEFRTFPSDH 659

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLL 671
            + + ++ G        E     + G   + +   + +       G H V +  +  K +
Sbjct: 660 YIFMSTALGTVKKTALDEFSNPRKAGIIAVDLDEGDHLIGAALTDGKHDVMLFSDGGKAV 719

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F  D +  M R  +GVR  + + G     +     E  + + +    Y +  +      
Sbjct: 720 RFDEDDVRPMGRNARGVRGMALEPGQNVIAMLVAEDESQSVLTATENGYGKRTSITEYTR 779

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             RG  G +  +   R+G+ +++
Sbjct: 780 HGRGTKGMIAIQQTERNGRVVAA 802



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 5/212 (2%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 + T    ++   +       I        +               + A+   EG
Sbjct: 635 PLQPNEKITVVLPLTGEFRTFPSDHYIFMSTALGTVKKTALDEFSNPRKAGIIAVDLDEG 694

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L  A        ++L S  GKA      ++     +   ++ +        I      
Sbjct: 695 DHLIGAALTDGKHDVMLFSDGGKAVRFDEDDVRPMGRNARGVRGMALEPGQNVIAMLVAE 754

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVV 664
           D +  +L  +  G       +E   + R  K  + +   E+   VV  T     D + ++
Sbjct: 755 DESQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQQTERNGRVVAATLVRPEDEIMLI 814

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            +   L+   + +I E+ R  +GV L S  DG
Sbjct: 815 TDRGVLVRTRVSEIRELGRATQGVTLISLDDG 846



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/204 (9%), Positives = 61/204 (29%), Gaps = 11/204 (5%)

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
               +  ++  +  VK+         R+              +  A+ + +   ++ S+ 
Sbjct: 656 PSDHYIFMSTALGTVKKTALDEFSNPRKAGIIAVDLDEGDHLIGAALTDGKHDVMLFSDG 715

Query: 528 GWIRSLKSHSVDLSALH---------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           G         V     +             + + + +    +  +L  + +G        
Sbjct: 716 GKAVRFDEDDVRPMGRNARGVRGMALEPGQNVIAMLVAEDESQSVLTATENGYGKRTSIT 775

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK- 637
                    + +  +     N  +V A +     ++++++ +G       SEI    R  
Sbjct: 776 EYTRHGRGTKGMIAIQQTERNGRVVAATLVRPEDEIMLITDRGVLVRTRVSEIRELGRAT 835

Query: 638 -GKTFLKVSSEEKMKLVVKVTGDH 660
            G T + +    ++  + ++  + 
Sbjct: 836 QGVTLISLDDGSQLGGLQRIVEND 859


>gi|270262776|ref|ZP_06191047.1| DNA gyrase subunit A [Serratia odorifera 4Rx13]
 gi|270043460|gb|EFA16553.1| DNA gyrase subunit A [Serratia odorifera 4Rx13]
          Length = 883

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/793 (33%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G
Sbjct: 1   MSD----LAREITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVINGCLAYIDDENISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYLRARAEVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL+ +
Sbjct: 296 SDKDGMRIVVEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-HQGQPKLLNLKDILQAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAGLVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVGAMLERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L +  +    I  E+  VKE+++          T         
Sbjct: 475 LDEYKELLTFIAELIFILENPDRLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +   N K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +  +G     +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLGEGDGVISLIVPRGEGD-ILTVTQNGYGKRTAVTEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G+ + +
Sbjct: 774 IKVSERNGQVVGA 786


>gi|271499645|ref|YP_003332670.1| DNA gyrase subunit A [Dickeya dadantii Ech586]
 gi|270343200|gb|ACZ75965.1| DNA gyrase, A subunit [Dickeya dadantii Ech586]
          Length = 877

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 397/793 (50%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  IS+E L+ +I GPDFPT   I+  +  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVINGCLAYIDDENISVEGLMAHIPGPDFPTAA-IINGKRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIDGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++  ++  + M+  F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNHLYSQTQMQVSFGINMVAL-HQGQPKLMTLKDILAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA +NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARERAHILEGLAIALVNIDPIIELIRHASTPADAKTALVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGSVAAMLERAGDDAARPEWLEPEFGIHDGKYRLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S ++    I  E+  ++E ++ +        +         
Sbjct: 475 LDEYKELLTQIAELLFILRSPERLMEVIREELEAIREQYNDARRTEITHNSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y L    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWLKVYQLPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ FS   +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  + +D      +     +G   +      + +        +  R   G + 
Sbjct: 715 GRTATGVRGINLQDDDRVVSLIVPRGDGD-ILTVTQNGFGKRTAVTEYPVKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 59/166 (35%), Gaps = 17/166 (10%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV  +   +R++   +  +  ++ ++ D +   +       IL ++ +G
Sbjct: 692 NEVMLFSAEGKVVRFSESAVRTMGRTATGVRGINLQDDDRVVSLIVPRGDGDILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                            + +  +     N  +V A   D+  ++++++  G       SE
Sbjct: 752 FGKRTAVTEYPVKSRATKGVISIKVSERNGKVVGAVQVDTADQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSS---------------EEKMKLVVKVTGD 659
           +    R   G T ++ +                ++++  VV V G+
Sbjct: 812 VSIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDDELDSVVPVDGE 857


>gi|268317740|ref|YP_003291459.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252]
 gi|262335274|gb|ACY49071.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252]
          Length = 853

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/786 (33%), Positives = 409/786 (52%), Gaps = 58/786 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+GL   A +KKS
Sbjct: 7   RIIPVNIEEEMKSSYIDYSMSVIVGRALPDVRDGLKPVHRRVLYGMYELGLTASAPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEAR
Sbjct: 67  ARIVGEVLGKYHPHGDAAVYDTMVRMAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++AE +L+ +D+D VDF+D ++    EPVV P+  PNL+ NG  GIAVGMAT IP HN
Sbjct: 127 LTRLAEEMLRDIDKDTVDFQDNFDGSLKEPVVLPAALPNLIVNGADGIAVGMATKIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +A+IDNP+IS+++LL+++  PDFPTGG I+     + E+Y  GRG   +RAR
Sbjct: 187 LGEAVDALVAMIDNPDISLDELLKHLPAPDFPTGG-IIYGYSGVKEAYATGRGRILIRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              EE+  G   +V+TEIPYQV KS LIEKIA L+  +RI  + DIRDES  +   V+  
Sbjct: 246 IHEEEIRPGRMALVITEIPYQVNKSSLIEKIAHLVRERRIDGITDIRDESDREGLRVVLE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +   P ++   ++  +  +  F +NM  L     P+ + L  +++ +L HR EV+ RR
Sbjct: 306 LRKDAVPLVIQNQLYKYTPCQQTFGVNMVALV-NGRPRTLTLKELMRHYLDHRHEVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           + F ++  + R  IL+GL IA  ++D +I IIR    P                      
Sbjct: 365 TRFELRKAEERAHILEGLKIALDHLDLVINIIRYSADPDEARQRLMEGVLPERLTPEQRE 424

Query: 420 ----------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      F+LTE Q +AIL LRL  L  LE  +++ E   LL E E++ S+L S  
Sbjct: 425 RLGLPVEQISHFTLTEAQANAILALRLSRLTGLERQKLEEEYRALLQEIERLRSILASEP 484

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
            +W  I  E+ E+K+ ++ +     RRT              + +IE E + V +S++G 
Sbjct: 485 LRWQIIREELLELKQKYADA-----RRTEI--DYAGGGDFAIEDLIEDEQVVVTLSHQGL 537

Query: 530 IRSLKSH--------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+    H         V + A   +E D ++        D +L  +  G+ Y L   ++ 
Sbjct: 538 IKRTPVHIYRQQGRGGVGMKASGMREDDYIEHLFACKNHDYLLFFTDHGRCYWLRVYDIP 597

Query: 582 SGRGHG--EAIQLLIDLNHNQDIVTAFV----------YDSTCKLLVVSSKGNAFIVEES 629
            G       +I+ LI +  +  +               +  T  +L+ + +G     E  
Sbjct: 598 EGSRTSLGRSIRNLIQIAPDDRVRAVLNIRKEDFENPEFLRTHYVLMATRQGLVKKTELE 657

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
                   G   +  +  +++   V   G  HV +     +++ F    +  M R  +GV
Sbjct: 658 AFSRPRADGIIAIAFAEGDELIEAVLTDGRAHVLLASSGGRVVRFDESDVRPMGRNTRGV 717

Query: 688 RLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R  + + G  +  ++          +  +   Y +        + +RGG G    K  PR
Sbjct: 718 RGIALETGEQVVGMVAVSPEASPCILSISANGYGKRTPLEEYPVHRRGGKGVWTMKITPR 777

Query: 747 SGKFLS 752
           +G+ ++
Sbjct: 778 TGRLIA 783



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 82/244 (33%), Gaps = 10/244 (4%)

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               + +  +     +   IR + +I               +    +       ++    
Sbjct: 589 YWLRVYDIPEGSRTSLGRSIRNLIQIAPDDRVRAVLNIRKEDFENPEFLRTHYVLMATRQ 648

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             V  +        ++    + A+ F EGD L  A+       +LL S+ G+       +
Sbjct: 649 GLVKKTELEAFSRPRAD--GIIAIAFAEGDELIEAVLTDGRAHVLLASSGGRVVRFDESD 706

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRK 637
           +     +   ++  I L   + +V            +L +S+ G        E   + R 
Sbjct: 707 VRPMGRNTRGVRG-IALETGEQVVGMVAVSPEASPCILSISANGYGKRTPLEEYPVHRRG 765

Query: 638 GKTF--LKVSSE-EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
           GK    +K++    ++  +  V   D + ++ +N  ++   +  I  M R  +GVRL   
Sbjct: 766 GKGVWTMKITPRTGRLIAIKAVQDTDDLMIITQNGLMIRIHVADISRMGRHTQGVRLIQL 825

Query: 693 KDGG 696
           K G 
Sbjct: 826 KPGD 829


>gi|171057647|ref|YP_001789996.1| DNA gyrase subunit A [Leptothrix cholodnii SP-6]
 gi|170775092|gb|ACB33231.1| DNA gyrase, A subunit [Leptothrix cholodnii SP-6]
          Length = 885

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/803 (30%), Positives = 390/803 (48%), Gaps = 62/803 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF   Y+  + EP+V PS+ PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRLAKIAHEMLADLDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSTGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+ NPE SIE+L+E I  PDFPT G I+     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLMKNPEASIEELMEIIPAPDFPTAG-IIYGINGVREGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKVHFEDIDRGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L     P++  L  +L+ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALID-GQPKLCNLKQLLEIFLEHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------- 414
           EV+ RR+ F ++    R  +L+GL +A  NIDE I  I+N   P                
Sbjct: 360 EVVTRRTVFELRKARDRGHVLEGLAVALANIDEFIETIKNSPTPPVAKLALMSKSWDSSV 419

Query: 415 -----------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L+++Q   IL +RL+ L  LE+ 
Sbjct: 420 VREMLTRAEGDTPGGRAAFRPEGLAPQFGMQADGLYRLSDDQAGEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR---TTFCEV 502
           +I  E  +++A+   +  +L    +    I  E+  V++ F +S    RR        E+
Sbjct: 480 KIVGEYKDVMAQIADLLDILAKPARVTVIIGDELTAVRQEFGQSKIGVRRSVVEHNVQEL 539

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
              D  T    ++       + S         K       A   K+ D +     A+T D
Sbjct: 540 GTEDLITPTDMVVTLSHTGYIKSQPLAEYRAQKRGGRGKQATATKDDDWVDELFIANTHD 599

Query: 562 RILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTC 612
            +L  S  G+ Y L    +        G+ I  +  L  ++ I            + +  
Sbjct: 600 WMLCFSNRGRVYWLKVWEVPQGGRNSRGKPIVNMFPLQPDEKINVVLPLTGANRSFPADH 659

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLL 671
            + + +++G        +     + G   + +   + +       G H V +  +  K +
Sbjct: 660 YIFMCTARGTVKKTALDDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAV 719

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F  + +  + R  +GVR  +  +G     +     E  + + +    Y +  + L    
Sbjct: 720 RFDEEDVRPLGRQARGVRGMALDEGQSVIAMLVAEDETQSVLTATENGYGKRTSILEYTR 779

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             RG  G +  +   R+GK +++
Sbjct: 780 HGRGTKGMIAIQQTERNGKVVAA 802



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 5/178 (2%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 669 TVKKTALDDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAVRFDEEDVRP 728

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  ++ +        I      D T  +L  +  G        E   + R  K  +
Sbjct: 729 LGRQARGVRGMALDEGQSVIAMLVAEDETQSVLTATENGYGKRTSILEYTRHGRGTKGMI 788

Query: 643 KVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            +   E+   VV  T     D + ++ +   L+   + +I E+ R  +GV L +  +G
Sbjct: 789 AIQQTERNGKVVAATLVRPNDEIMLITDRGVLVRTRVAEIRELGRATQGVTLIALDEG 846



 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 36/104 (34%), Gaps = 2/104 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
            T  +L  + +G                 + +  +     N  +V A +     ++++++
Sbjct: 756 ETQSVLTATENGYGKRTSILEYTRHGRGTKGMIAIQQTERNGKVVAATLVRPNDEIMLIT 815

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
            +G       +EI    R   G T + +    K+  + ++  + 
Sbjct: 816 DRGVLVRTRVAEIRELGRATQGVTLIALDEGAKLSGLQRIVEND 859


>gi|300853239|ref|YP_003778223.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
 gi|300433354|gb|ADK13121.1| DNA gyrase, subunit A [Clostridium ljungdahlii DSM 13528]
          Length = 823

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/752 (32%), Positives = 399/752 (53%), Gaps = 14/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     
Sbjct: 2   FDEGKILPVDISREMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLTPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VYD+LVRLAQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++   +L+G++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMNKITLEMLRGINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    + +IDNP+I+I +L+  I GPDFPT G I+     I  +Y  GRG   
Sbjct: 182 PPHNLTEVINGVIMIIDNPDITISELMTSIKGPDFPTAG-IIIGTSGIRSAYETGRGKIL 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +EEV  G   I++TEIPYQV KS+LIE +A+L+  K+I  + DIRDES  D   
Sbjct: 241 VRAKAEIEEVK-GRNRIIITEIPYQVNKSKLIENMADLVKNKKIDGISDIRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++ +  ++  + M+  F + M  L     P+V+ L  +L  +L  + E+
Sbjct: 300 IVIELKRDANPNVTLNQLYKHTRMQDTFGIIMISLV-NNEPKVLNLKQMLVYYLQFQEEI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR+    +      +S FSL+E Q 
Sbjct: 359 VTRRTKFDLDKAQARAHILEGLKIALDHIDEVIHLIRSSKTAENARNGLMSEFSLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  +I++E + L+   + +  +L + +     I  E+ E+++ +  
Sbjct: 419 QAILDMRLQRLTGLEREKIENEYNELMETIKHLKEILENKELLLKIIKDELIEIRDKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 + +             +  +       +   +     S +     + A+  KE 
Sbjct: 479 ERKTEIQISNDDINIEDLIEEQEVVITLTHSGYIKRISADTYSSQRRGGKGIQAMSTKED 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAF 606
           D ++      T + IL  +  GK Y L    +       +      LI L  ++ I    
Sbjct: 539 DFVEHIFITSTHNNILFFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLIPLQGDEQIQAVI 598

Query: 607 VY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
            +   D     ++ +  G     + S+  +  + G   + +  E+++  V   TG+  + 
Sbjct: 599 SFKEVDKDNYFIMATRCGLIKKTKISQYASIRKNGLNAINLKDEDELIGVRMTTGESEIL 658

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +  +N   + FS D +    R   GVR  + + G I+  +   + +    +  +   + +
Sbjct: 659 IFTKNGYAIRFSEDDVRPTGRNTTGVRAITLRTGDIAVAMDI-VDKSQDVLVISENGFGK 717

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   + +RGG G +  K   ++G  + +
Sbjct: 718 RTPVSEYTIHRRGGKGIITYKVTEKTGLIVGA 749



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 6/216 (2%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +   + K   +           +I      +        L+A++ K+ D L        
Sbjct: 594 IQAVISFKEVDKDNYFIMATRCGLIKKTKISQYASIRKNGLNAINLKDEDELIGVRMTTG 653

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
              IL+ + +G A      ++     +   ++  I L      V   + D +  +LV+S 
Sbjct: 654 ESEILIFTKNGYAIRFSEDDVRPTGRNTTGVR-AITLRTGDIAVAMDIVDKSQDVLVISE 712

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSI 675
            G       SE   + R GK  +     EK   +     V   D + ++  +   +  ++
Sbjct: 713 NGFGKRTPVSEYTIHRRGGKGIITYKVTEKTGLIVGARVVKDEDEMMLINSSNVAIRLNV 772

Query: 676 DQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
            +I   +R   GV L    +      I    C   T
Sbjct: 773 SEISVTNRNTMGVTLMRTDEEQRVVAIAKINCSDDT 808


>gi|118587954|ref|ZP_01545364.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614]
 gi|118439576|gb|EAV46207.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614]
          Length = 750

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/745 (58%), Positives = 573/745 (76%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     +++++L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRR+++AM  + 
Sbjct: 1   MGKETTPPPSGIESINLKNALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLK 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD G+ FKK AR+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPLI GQGNFGN+DGD+
Sbjct: 61  LDPGSGFKKCARVVGDVIGKYHPHGDQAVYDALVRLAQDFAQRYPLIDGQGNFGNVDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT  A+ +L G+DE+AVDFR+TY+ ED EP+V P  FPNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTDTAKRLLDGLDENAVDFRETYDGEDKEPIVLPGGFPNLLGNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN  E+CEA   LI NP     +LLEYI GPDFPTGG++V  + SI E+Y  
Sbjct: 181 GMATSIPPHNAFELCEACQHLIKNPNAETGELLEYIKGPDFPTGGLLVSDQGSIREAYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FRVRARW VE++GRG W IVVTEIPYQVQKSRLIEKIAEL+ A+++PLL+D+RDES
Sbjct: 241 GRGSFRVRARWEVEDLGRGQWAIVVTEIPYQVQKSRLIEKIAELLTARKLPLLDDVRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AED+RIVL P++R++D ++LMES+F L+D+E RF LNMNVLSMG+VP VM L  +L+EWL
Sbjct: 301 AEDIRIVLVPRSRNVDANILMESLFKLTDLENRFSLNMNVLSMGKVPMVMGLKQVLREWL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HR+EVL RRS +R+  I+ R+E+L+G L+AYLN+DE+I IIR ED+PK  ++  F L++
Sbjct: 361 DHRKEVLIRRSEYRLGQINHRLEVLEGYLVAYLNLDEVIRIIREEDEPKAELMQTFELSD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE +I+ E D L AEK+ +  LL S  +QW +I+ EI ++ ++
Sbjct: 421 VQAEAILNMRLRSLRKLEEMEIRKEHDKLSAEKDDLTKLLGSDARQWTKISKEIADISKV 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +   T++G+RRT   E    D   +QQAMIEKEPITV+IS +GWIR++K H  DLS + F
Sbjct: 481 YGPETEIGKRRTDKSEAPETDLIDIQQAMIEKEPITVIISEKGWIRAMKGHQTDLSGVVF 540

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD LK++LHA TTD+ILL ST GK +TL A  L  GRGHGE I+L+++++  QD+V A
Sbjct: 541 KQGDKLKLSLHAETTDKILLFSTGGKFFTLGADRLPGGRGHGEPIRLMVEMDEAQDVVNA 600

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+     LL+ +++   F+V E +++ANTRKGK  L +S+  +  + V+ +GDHVA++G
Sbjct: 601 FVHKPGRNLLLATTEARGFVVSEDDVVANTRKGKQVLNLSAPAEASICVEASGDHVAIIG 660

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRKLL+F + QIP+M RG+GVRLQ Y+DG ISD+  FK  +GLTW DS+GRS+ RS ++
Sbjct: 661 ENRKLLVFPLVQIPQMGRGRGVRLQRYRDGNISDIRVFKGEDGLTWTDSSGRSFTRSLDE 720

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  W G+RG  G L P GFPRS KF
Sbjct: 721 LADWRGERGQAGRLPPTGFPRSNKF 745


>gi|17545620|ref|NP_519022.1| DNA gyrase subunit A [Ralstonia solanacearum GMI1000]
 gi|17427913|emb|CAD14603.1| probable dna gyrase (subunit a)(type II topoisomerase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 885

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/796 (30%), Positives = 385/796 (48%), Gaps = 63/796 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E
Sbjct: 130 IAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLRE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NP+ ++++L+E I  PDFPT G I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLRNPDATVDELIELIPAPDFPTAG-IIYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVD-GQPRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  IL+GL +A  NIDE IAII+    P                        
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLVREMLSRA 427

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F                +          
Sbjct: 488 VMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLITPQDLV 547

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 548 VTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLY 607

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    +        G  I  +  L+  + I        +D    + + +SKG       
Sbjct: 608 WLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKGTVKKTAL 667

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E     + G   + +   + +       G H V +  +  K + F  + +  M R  +G
Sbjct: 668 TEFSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG 727

Query: 687 VRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           VR  + ++G     +     E           + + +    Y +           RG  G
Sbjct: 728 VRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYTRHGRGTKG 787

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK +++
Sbjct: 788 MIAIQTSERNGKVVAA 803



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   +GD L  A        ++L S  GKA      ++  
Sbjct: 661 TVKKTALTEFSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP 720

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L   Q ++   V  +             +L  +  G       SE  
Sbjct: 721 MGRQARGVRGM-NLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYT 779

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     + + +   +    D + ++     L+   +D+I EM R  +GV
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGV 839

Query: 688 RLQSYKDG 695
            L +  +G
Sbjct: 840 TLIAVGEG 847


>gi|238788613|ref|ZP_04632405.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641]
 gi|238723208|gb|EEQ14856.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641]
          Length = 884

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE ++ +        T         
Sbjct: 475 LDEYKELLTIIGELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|69246711|ref|ZP_00604079.1| DNA gyrase, subunit A [Enterococcus faecium DO]
 gi|258615265|ref|ZP_05713035.1| DNA gyrase, A subunit [Enterococcus faecium DO]
 gi|293563256|ref|ZP_06677708.1| DNA gyrase, A subunit [Enterococcus faecium E1162]
 gi|293569154|ref|ZP_06680460.1| DNA gyrase, A subunit [Enterococcus faecium E1071]
 gi|68195125|gb|EAN09584.1| DNA gyrase, subunit A [Enterococcus faecium DO]
 gi|291588123|gb|EFF19965.1| DNA gyrase, A subunit [Enterococcus faecium E1071]
 gi|291604795|gb|EFF34277.1| DNA gyrase, A subunit [Enterococcus faecium E1162]
          Length = 823

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 398/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|237653702|ref|YP_002890016.1| DNA gyrase subunit A [Thauera sp. MZ1T]
 gi|237624949|gb|ACR01639.1| DNA gyrase, A subunit [Thauera sp. MZ1T]
          Length = 883

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/796 (30%), Positives = 385/796 (48%), Gaps = 63/796 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  + EP+V P++ PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEKEPLVLPARIPNLLINGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +A L L+  P+  IE L++ +  PDFPT G ++     + E YR GRG  
Sbjct: 182 IPPHNLGEIVDACLKLLAEPDTDIEALIDIVQAPDFPTAG-LIYGLAGVREGYRTGRGRV 240

Query: 251 RVRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   E +       I+V E+PYQV K  L E++AEL+  K+I  + +IRDES +  
Sbjct: 241 IMRARTHFEPIGKTDRQAIIVDELPYQVNKRTLQERMAELVNEKKIEGISEIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++  +F  + ++  F +NM  L     P+++ L  +L  +L HRR
Sbjct: 301 MRLVIELKRGEMPEVVLNKLFKHTQLQDSFGMNMVALVD-GKPRLLNLKQMLVCFLEHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------- 416
           EV+ RR+ F ++    R  IL+GL +A  N+DEIIA+I+    P                
Sbjct: 360 EVVTRRTIFELRKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRELMAREWRSAL 419

Query: 417 ------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+E Q  AIL LRL+ L  LE+ +I  E  
Sbjct: 420 VEEMLSRALADSYRPEGLDPQYGLQAQGYRLSEAQAQAILELRLQRLTGLEQDKIVGEYR 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++     +  +L   ++    I  E+  ++  F        RR+   E+         +
Sbjct: 480 EVMDVITDLLDILARPERITAIIVEELGAIRNQFGDP-----RRS---ELVMNTAEINIE 531

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+ +          +       A   K+ D +     A+T D +L
Sbjct: 532 DLITPEDMVVTLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVL 591

Query: 565 LLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S  G+ Y L    +        G+ I  L  L   + I        +D    + + +S
Sbjct: 592 CFSNRGRCYWLKVYEVPEGTRNSRGKPIVNLFPLVEGEKITAVLPIKEFDEEHFVFMATS 651

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
           +G       +      + G   + +   + +  V    G   V +  +  K + F+   +
Sbjct: 652 EGTVKKTALTAFSNPRKAGIIAVNLDDGDHLIGVAITDGQCDVMLFSDAGKAVRFAETDV 711

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             M R  +GVR  + +DG     +     E  + + +    Y +           RG  G
Sbjct: 712 RPMGRDARGVRGMTLEDGQAVIAMLVAKDESQSVLTATENGYGKRTPVAEYTRHGRGTKG 771

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+G+ + +
Sbjct: 772 MIAIQTSDRNGRLVGA 787



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 65/192 (33%), Gaps = 5/192 (2%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
             ++  +        +               + A++  +GD L           ++L S 
Sbjct: 640 FDEEHFVFMATSEGTVKKTALTAFSNPRKAGIIAVNLDDGDHLIGVAITDGQCDVMLFSD 699

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GKA      ++         ++ +   +    I      D +  +L  +  G       
Sbjct: 700 AGKAVRFAETDVRPMGRDARGVRGMTLEDGQAVIAMLVAKDESQSVLTATENGYGKRTPV 759

Query: 629 SEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR- 683
           +E   + R  K  + + + ++   +   V V   D V ++     L+  S++ I EM R 
Sbjct: 760 AEYTRHGRGTKGMIAIQTSDRNGRLVGAVLVEPSDEVMLISTGGVLIRTSVESIREMGRS 819

Query: 684 GKGVRLQSYKDG 695
            +GV L +  +G
Sbjct: 820 TQGVTLINLDEG 831


>gi|253996361|ref|YP_003048425.1| DNA gyrase subunit A [Methylotenera mobilis JLW8]
 gi|253983040|gb|ACT47898.1| DNA gyrase, A subunit [Methylotenera mobilis JLW8]
          Length = 862

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/788 (31%), Positives = 394/788 (50%), Gaps = 63/788 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDYNKPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  +L+ NPE ++E+L+E +  PDFPT G I+     + E YR GRG   +R R   
Sbjct: 190 VLDACFSLLKNPETTVEELIELVPAPDFPTAG-IIYGTVGVKEGYRTGRGRVVMRGRTHF 248

Query: 259 EE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E+    G   I++ E+PYQV K  LIEKIAEL+  K+I  + D+RDES +    V+    
Sbjct: 249 EDMDKGGRQSIIIDELPYQVNKKTLIEKIAELVNEKKIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   PD+++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEIPDVVLNNLYKQTQLQDTFGMNMVALLD-GQPRLLNLKQMLEAFLRHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-------------------- 417
           F ++    R  +L+GL +A  N+DE+IAII+    P                        
Sbjct: 368 FELRKARERGHVLEGLAVALANVDEMIAIIKAAPTPPEAKKDLMAKSWQSPVVEEMLKRA 427

Query: 418 -----------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                             + + L++ Q   IL +RL+ L  LE+ +I +E   ++     
Sbjct: 428 AMEAARPEGLAVNFGLTPNGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVIAD 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L +  +    I  E+ E++  F       +RR+   E ++       + +I  + +
Sbjct: 488 LLDILATAARVTAIITDELTEIRRQFGD-----KRRSEIVENAQD---LSLEDLIAPQDV 539

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G+         R+ K       A   KE D +     A+T D IL  S  G+ 
Sbjct: 540 VVTLSHTGYIKSQPLDEYRAQKRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSNRGRV 599

Query: 573 YTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVE 627
           Y L    +        G+ I  L  L  N+ I        +D    + + +S G      
Sbjct: 600 YWLKVYEVPQGSRTSRGKPIVNLFPLEENEKINAILSVKSFDENHFIFMATSLGTVKKTA 659

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-K 685
            +E     R G   + +   + +       G + V +V    K + F  D++ +M R  +
Sbjct: 660 LTEFANPRRSGIIAINLDEGDYLIGAEITNGSNDVVLVSNGGKAVWFDEDEVRQMGRATR 719

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR     +      +     +  T + +    Y +           RG  G        
Sbjct: 720 GVRGMKLAEDQQVLSLLIASNDQQTVMVATENGYGKRTVLADFRRSGRGTQGVKAIAVSE 779

Query: 746 RSGKFLSS 753
           R+G  +++
Sbjct: 780 RNGLVVAA 787



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 65/184 (35%), Gaps = 5/184 (2%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A++  EGD L  A   + ++ ++L+S  GKA       +  
Sbjct: 654 TVKKTALTEFANPRRSGIIAINLDEGDYLIGAEITNGSNDVVLVSNGGKAVWFDEDEVRQ 713

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKT 640
                  ++ +      Q +      +    ++V +  G       ++   + R   G  
Sbjct: 714 MGRATRGVRGMKLAEDQQVLSLLIASNDQQTVMVATENGYGKRTVLADFRRSGRGTQGVK 773

Query: 641 FLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
            + VS    + +  K+    D + ++     L+   + +I E+ R  +GV L +  +G  
Sbjct: 774 AIAVSERNGLVVAAKLVSDEDEIMLITTGGVLIRTRVSEIRELGRATQGVTLINLGEGEK 833

Query: 698 SDVI 701
              I
Sbjct: 834 LSGI 837



 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
               +   I S+ +  +  +  +A  +  VK+         RR              +  
Sbjct: 626 EENEKINAILSVKSFDENHFIFMATSLGTVKKTALTEFANPRRSGIIAINLDEGDYLIGA 685

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH---------AHTTDRI 563
            +       V++SN G         V       +    +K+A           ++    +
Sbjct: 686 EITNGSNDVVLVSNGGKAVWFDEDEVRQMGRATRGVRGMKLAEDQQVLSLLIASNDQQTV 745

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           ++ + +G        +        + ++ +     N  +V A +     +++++++ G  
Sbjct: 746 MVATENGYGKRTVLADFRRSGRGTQGVKAIAVSERNGLVVAAKLVSDEDEIMLITTGGVL 805

Query: 624 FIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV--TGDH 660
                SEI    R   G T + +   EK+  + K+  T D 
Sbjct: 806 IRTRVSEIRELGRATQGVTLINLGEGEKLSGIEKIVETDDE 846


>gi|148978903|ref|ZP_01815223.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
 gi|145962101|gb|EDK27387.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
          Length = 880

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/800 (33%), Positives = 413/800 (51%), Gaps = 67/800 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LALI+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVVDGCLALINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKADIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-------------- 411
            HRREV+ RR+ F ++    R  IL+ L +A  NIDEII +IRN                
Sbjct: 355 DHRREVVTRRTIFELKKARDRAHILEALSLALANIDEIIELIRNAPTPADAKAGLVARGW 414

Query: 412 -----------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 DLGNVASMLERAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V+EI+        RRT   E++ A   
Sbjct: 475 DEYKALLEEIAELMHILASTERLMEVIREELEAVREIYGDE-----RRT---EITAAVHD 526

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              + +I +E + V +SN G+          + +      SA   K+ D ++  L A+T 
Sbjct: 527 IDMEELIAQEDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTH 586

Query: 561 DRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
           D IL  ST GK Y L    L   S    G+ I  ++ L   + I        + +   + 
Sbjct: 587 DNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIF 646

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + +  G        +       G   + +  ++ +  V    GD  + +  ++ K++ F+
Sbjct: 647 MATGDGTVKKTSLDQFANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKSGKVVRFN 706

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            D++  M R   GVR     +      +     EG   +      Y +           R
Sbjct: 707 EDKVRAMGRTASGVRGMKLPEDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGR 765

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
              G +  K   R+G  + +
Sbjct: 766 ATQGVVSIKVSERNGPVVGA 785


>gi|319762552|ref|YP_004126489.1| DNA gyrase, a subunit [Alicycliphilus denitrificans BC]
 gi|330824569|ref|YP_004387872.1| DNA gyrase subunit A [Alicycliphilus denitrificans K601]
 gi|317117113|gb|ADU99601.1| DNA gyrase, A subunit [Alicycliphilus denitrificans BC]
 gi|329309941|gb|AEB84356.1| DNA gyrase, A subunit [Alicycliphilus denitrificans K601]
          Length = 896

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/808 (30%), Positives = 398/808 (49%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  
Sbjct: 19  TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 78

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 79  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 138

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF   Y+  + EP+V PS+ PNLL NG++GIAVGMAT+
Sbjct: 139 YTEIRLAKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSAGIAVGMATN 198

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+ NPE SI++L+E I  PDFPT G I+   + + + YR GRG  
Sbjct: 199 IPPHNLNEVVDACLHLLRNPESSIDELMEIIPAPDFPTAG-IIYGIQGVKDGYRTGRGKV 257

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K++  +  I+DES +  
Sbjct: 258 VMRAKVHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSG 317

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L     P++  L  +++ +L HRR
Sbjct: 318 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVD-GQPKLCNLKELIEVFLQHRR 376

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------------ 411
           EV+ RR+ F ++    R  +L+GL +A  NIDE I IIR                     
Sbjct: 377 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQL 436

Query: 412 ---------------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                      +        + L++ Q   IL +RL+ L  LE+
Sbjct: 437 VREMLTRTREDGGVVNADDYRPEGLEREFGMQESGLYRLSDTQAQEILQMRLQRLTGLEQ 496

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  +++A  E +  +L    +    I  E+  +++ F ++    RR T       
Sbjct: 497 DKIVAEYKDVMAVIENLLDILAKPARVSTIIGEELSALRQEFGQTRLGARRSTIE----H 552

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+         R+ K       A   KE D +     
Sbjct: 553 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFI 612

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 613 ANTHDYILCFSNRGRLYWLKVWEVPAGSRNSRGRPIVNMFPLQEGEKINVVLPLTGEMRS 672

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G+H V +  +
Sbjct: 673 FPADRYVFMATSMGTVKKTALDEFSNPRKAGIIAVGLDEGDYLIGAALTDGEHDVMLFSD 732

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           + K + F  + +  M R  +GV+    +DG     +     E  + + +    Y +  + 
Sbjct: 733 SGKAVRFDENDVRPMGRNARGVKGMQLEDGQSVIAMLVAEDENQSVLTATENGYGKRTSI 792

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RG  G +  +   R+G+ +++
Sbjct: 793 TEYTRHGRGTKGMIAIQQSERNGRVVAA 820



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 78/262 (29%), Gaps = 14/262 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G +   
Sbjct: 612 IANTHDYILCFSNRGRLYWLKVWEVPAGSRNSRGRPIVNMF---------PLQEGEKINV 662

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++   ++      +        +               + A+   EGD L  A    
Sbjct: 663 VLPLTGEMRSFPADRYVFMATSMGTVKKTALDEFSNPRKAGIIAVGLDEGDYLIGAALTD 722

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               ++L S  GKA      ++     +   ++ +   +    I      D    +L  +
Sbjct: 723 GEHDVMLFSDSGKAVRFDENDVRPMGRNARGVKGMQLEDGQSVIAMLVAEDENQSVLTAT 782

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFS 674
             G       +E   + R  K  + +   E+   VV  T     D + ++ +   L+   
Sbjct: 783 ENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGRVVAATLVHADDEIMLITDTGVLVRTR 842

Query: 675 IDQIPEMSRG-KGVRLQSYKDG 695
           + +I E+ R  +GV L S  +G
Sbjct: 843 VSEIRELGRATQGVTLISLDEG 864



 Score = 40.9 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               +L  + +G                 + +  +     N  +V A +  +  ++++++
Sbjct: 774 ENQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGRVVAATLVHADDEIMLIT 833

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
             G       SEI    R   G T + +    K+  + ++  + 
Sbjct: 834 DTGVLVRTRVSEIRELGRATQGVTLISLDEGAKLSGLQRIVEND 877


>gi|261206922|ref|ZP_05921611.1| DNA gyrase subunit A [Enterococcus faecium TC 6]
 gi|289566501|ref|ZP_06446925.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF]
 gi|294616654|ref|ZP_06696425.1| DNA gyrase, A subunit [Enterococcus faecium E1636]
 gi|260078550|gb|EEW66252.1| DNA gyrase subunit A [Enterococcus faecium TC 6]
 gi|289161710|gb|EFD09586.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF]
 gi|291590474|gb|EFF22212.1| DNA gyrase, A subunit [Enterococcus faecium E1636]
          Length = 823

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 398/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTISGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|237747506|ref|ZP_04577986.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS]
 gi|229378857|gb|EEO28948.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS]
          Length = 872

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/807 (29%), Positives = 397/807 (49%), Gaps = 70/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               +   ++SL   + + YL YA+S I  RA+PD+RDG KPVHRR++  M EM   +  
Sbjct: 2   DQFAKETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNTWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + K AR+VGEV+GK HPHGDQS+YD+LVR+AQ F  RY L+ GQGNFG+IDGD+AAA R
Sbjct: 62  PYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A+ +L  +D++ +DF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTECRLDKIADEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+   +L L+ +P+ +I++L++ I  PDFPTGG ++     + E YR GRG  
Sbjct: 182 IPPHNLAEVIRGSLHLLHHPDCTIDELIDIIPAPDFPTGG-LIYGVTGVREGYRTGRGRV 240

Query: 251 RVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   EE GR G   I++ E+PYQV K  L+E+IAE +  K++  + DIRDES +  
Sbjct: 241 VMRARTHFEEHGRDGRQAIIIDELPYQVNKKTLLERIAESVREKKLDGISDIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R+   ++++ ++F  + ++  F +NM  L     P+++ L  +L+ +LAHRR
Sbjct: 301 MRVVIELKRNEVAEVVLNNLFKQTQLQDTFGMNMVALVD-GQPKLLNLKQMLECFLAHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------- 412
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAIIR                     
Sbjct: 360 EVVTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIARQELMARSWDSSL 419

Query: 413 ---------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L+E Q   IL +RL+ L  LE+ 
Sbjct: 420 VRSMLERTGNEHTNSVDDFRPEGLPKIYGIQSDGLYKLSEEQATEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E  +++ +  ++  +L   ++    I  E+  V   +++     RR     E+   
Sbjct: 480 RILNEYGDVMRQIAELLDILARPERVLEIIDTELTAVIGEYAEKAKDTRRS----EIELN 535

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I  + + V +S+ G+         R+ K       A   KE D +     A
Sbjct: 536 ASDLETEDLITPQDMVVTLSHSGYIKSQPLSEYRAQKRGGRGRQATSTKEDDWVDQLFIA 595

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------Y 608
           +T D IL  S  G+ Y L    +        G+ I  +  L   + I            +
Sbjct: 596 NTHDYILCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGEEKITVILPLSGENRNF 655

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
                + + +S+G       ++     + G   + +   + +       G+H V +  + 
Sbjct: 656 PENHYIFMATSQGTVKKTPLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGNHDVMLFSDA 715

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            K + F  + +  M R  +GV+  + +D      +     E  + + +    + +     
Sbjct: 716 GKAVRFDENDVRPMGRTARGVKGMNLEDEQKVIALLVAGDENQSVLTATENGFGKRTPIA 775

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  +   R+GK +++
Sbjct: 776 EYTRHGRGTKGMIAIQTSERNGKVVAA 802



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 78/262 (29%), Gaps = 14/262 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       +   +  +    S   +   I                   + T 
Sbjct: 594 IANTHDYILCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMF---------PLQGEEKITV 644

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              +S  ++   +   I        +               + A+   EGD L  A    
Sbjct: 645 ILPLSGENRNFPENHYIFMATSQGTVKKTPLTDFSNPRKAGIIAVGLDEGDYLIGAALTD 704

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               ++L S  GKA      ++         ++ +   +  + I      D    +L  +
Sbjct: 705 GNHDVMLFSDAGKAVRFDENDVRPMGRTARGVKGMNLEDEQKVIALLVAGDENQSVLTAT 764

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
             G       +E   + R  K  + +     + + +   +    D + ++     L+   
Sbjct: 765 ENGFGKRTPIAEYTRHGRGTKGMIAIQTSERNGKVVAATLVSENDEIMLITTGGVLIRTR 824

Query: 675 IDQIPEMSRG-KGVRLQSYKDG 695
           + +I EM R  +GV L S ++G
Sbjct: 825 VSEIREMGRATQGVTLISIEEG 846


>gi|188587904|ref|YP_001919472.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43]
 gi|188498185|gb|ACD51321.1| DNA gyrase, A subunit [Clostridium botulinum E3 str. Alaska E43]
          Length = 849

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/761 (33%), Positives = 406/761 (53%), Gaps = 30/761 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  + +V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M  +GL    
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  + LIDNPE SI +L+  I GPDFPTG   +     I  +Y  GRG  
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGA-TIMGHAGIRSAYETGRGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+ TEIPYQV K++LIE IAEL+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKSEIEEEN-GRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++++  ++  + ++  F + M  L      +V+ L  +L  ++  ++E
Sbjct: 300 RIVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNET-KVLNLKEVLVHYIDFQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR++F +   + R  IL+GL IA  NID +I+IIRN       K  ++  F+L+E Q
Sbjct: 359 VITRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFNLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL ++LR L  LE  +I  E + LL + E + S+L S ++    I  E+ E+K  + 
Sbjct: 419 SQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLGVIKDELLEIKAKYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   +          + +I++E + + ++  G+I+          +     
Sbjct: 479 DE-----RRTDIEQ---DMNEINIEDLIQEEDVVITLTKSGYIKRISADVYSAQRRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLN 597
           + A+  KE D +       T   +L  +  G+ Y L A  +       +      LI + 
Sbjct: 531 IQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIAIE 590

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T            L + + +G       +E     + G   + +   +++  V 
Sbjct: 591 ADEKIQTVLTVTDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLKVK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD +V  V +N   L F+   +  M R   GV+  + KD  I+  +   + E    +
Sbjct: 651 ITYGDANVMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKDDDIAVCMDIAVDEEE-LL 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +        +  RGGVG +  K   ++GK + +
Sbjct: 710 VISENGFGKRTPVSEYKIQHRGGVGLITYKISEKTGKLVGA 750



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 61/199 (30%), Gaps = 6/199 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               L A++ +E D L      +    ++ ++ +G A      ++  
Sbjct: 618 IVKKTHLNEFRNLRKNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVRH 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 +    I L  +   V   +     +LLV+S  G       SE     R G   +
Sbjct: 678 MGRTA-SGVKAITLKDDDIAVCMDIAVDEEELLVISENGFGKRTPVSEYKIQHRGGVGLI 736

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
                EK   +         D + ++  N   +  ++  I + SR   GV L    +   
Sbjct: 737 TYKISEKTGKLVGATVCKVDDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEK 796

Query: 698 SDVICFKICEGLTWIDSAG 716
              I   +      ++   
Sbjct: 797 IVAIAKILKSDDEDLEENE 815


>gi|329736159|gb|EGG72432.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU045]
          Length = 893

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/762 (33%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDFSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G +V  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LVLGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D        +  RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ FS   +  + R   GV+  S ++G     +     E   
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVADSESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L     +V   V DS    ++LVV+  G       SE   + R GK      +
Sbjct: 688 AGVKGISLREGDTVVGLDVADSESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
              +   + +      + + VV     ++   +  I +  R  +GVRL    DG     +
Sbjct: 748 TERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTV 807

Query: 702 CFKICEGL 709
                E  
Sbjct: 808 AKVNEEDD 815


>gi|312621136|ref|YP_004022749.1| DNA gyrase subunit A [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201603|gb|ADQ44930.1| DNA gyrase, A subunit [Caldicellulosiruptor kronotskyensis 2002]
          Length = 809

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/751 (33%), Positives = 406/751 (54%), Gaps = 23/751 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVDIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+DN   S++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   IVVTE+PY V K+RLIEKIAEL+  KRI  + DIRDES ++   ++  
Sbjct: 246 ATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L     P+V+ L  +L  ++ H++EV+ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVD-NQPKVLTLMDMLNLYIEHQKEVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+             RF  TE Q  AIL
Sbjct: 365 TKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISRFQFTEVQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIE------KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             RRT   +    D    +    +           +        +S K     ++ +  +
Sbjct: 482 --RRTKIIQDEHEDFEEEELIQEQETVITLTHFGYIKRLPLDTYKSQKRGGRGITGISTR 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D ++      T   IL  +  G+ + L A  +  G    +  AI  LI +  ++ I  
Sbjct: 540 EEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKITA 599

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
                      L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D +
Sbjct: 600 TMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGNDEI 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V  N   ++F+ + +  M R  +GV+  + +DG    V   K  +G   +      + 
Sbjct: 660 VLVSSNGYCVVFNENDVRSMGRTAQGVKGMTLEDGDFI-VGMEKASDGKYLLCVTENGFG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +          KRG  G L  K   ++G+ +
Sbjct: 719 KRSEIEEYRKTKRGAKGVLTYKVTDKTGRIV 749



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              A+   + DSL         D I+L+S++G        ++ S     + +   + L  
Sbjct: 635 GKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSMGRTAQGV-KGMTLED 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVK 655
              IV          LL V+  G     E  E     R  K  L     +   ++  +  
Sbjct: 694 GDFIVGMEKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTDKTGRIVDIKM 753

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           V   D + +       +   + QIP   R  +GV+L    DG    V    
Sbjct: 754 VNDEDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRI-DGDNIKVSSIA 803


>gi|56961789|ref|YP_173511.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
 gi|56908023|dbj|BAD62550.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
          Length = 830

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/765 (34%), Positives = 421/765 (55%), Gaps = 33/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  +      ++   +   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++AM E+G
Sbjct: 1   MAEEDVP---RLRERQIDEEMKESFIDYAMSVIVSRALPDVRDGMKPVHRRILYAMFELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L++G GNFG+IDGDS
Sbjct: 58  MTPDKPYKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQDFSYRYMLVNGHGNFGSIDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE++M++++  +++ +++D VDF D Y+  + EP V PS+FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTESKMSKISMELVRDLNKDTVDFIDNYDGTEREPKVMPSRFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+ISI +L+EYI GPDFPTGG I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDGVLALAKNPDISIPELMEYIPGPDFPTGGEIL-GRSGIRKAYST 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  + E   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + ++RD S
Sbjct: 237 GRGSITVRAKTEIVENK-GKQSIIVTELPYQVNKARLIEKIAELVRDKKIDGITELRDSS 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P++++ ++F  + ++T F +NM  L     P+V+ L   L+++L
Sbjct: 296 DRNGMNIVIDVRRDANPNVILNNLFKQTALQTSFGINMLALV-NGRPEVLNLKQTLEQYL 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
           AH+ EV+ RR+ F +   + R  IL+GL IA  +IDEIIA+IR  D     +  ++ RF 
Sbjct: 355 AHQVEVIRRRTQFDLNKAEARAHILEGLRIALDHIDEIIALIRGSDTAEIARNGLIERFE 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+ +Q  AIL++RL+ L  LE  +++ E  ++LA   ++ ++L S ++  + I  EI  +
Sbjct: 415 LSYDQAQAILDMRLQRLTGLERDKLEQEYKDVLARIAELRAILASDEKVIDVIQEEILAI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     S +++    + +I ++ I + I++ G+I+          K
Sbjct: 475 KEKFNDE-----RRTVI---SASEEHLEDEDLIPRQNIVITITHNGYIKRLPISTYRAQK 526

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++     +T   +L+ +  GKAY L    +       +      
Sbjct: 527 RGGKGVQGMGTNDDDFVQHLFTTNTHHTVLVFTNKGKAYRLKGYEIPELGRTAKGIPAIN 586

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+  +  + I T      +D    L  V+  G A   + S      + G   + +   + 
Sbjct: 587 LLPFDPGETISTVIPIECFDDDSYLFFVTEHGIAKRTKLSAFANIRKGGLFAINLREGDS 646

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  V    G+  V +  +    + F    +  M R   GV+  +  +     V    + E
Sbjct: 647 LHGVRLTDGNREVMIGTKQGMAIRFPETDVRLMGRTAGGVKGITLSENDGV-VGMEVVDE 705

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + +    + Y +        +  RGG G        ++G  +S
Sbjct: 706 NQSVLVVTEKGYGKRTPLDEYRVQSRGGKGIKTCNITDKNGPLVS 750



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 63/169 (37%), Gaps = 6/169 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A++ +EGDSL           +++ +  G A   P  ++             I L+ 
Sbjct: 635 GLFAINLREGDSLHGVRLTDGNREVMIGTKQGMAIRFPETDVRLMGRTA-GGVKGITLSE 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVV 654
           N  +V   V D    +LVV+ KG        E    +R GK      +   +   + L +
Sbjct: 694 NDGVVGMEVVDENQSVLVVTEKGYGKRTPLDEYRVQSRGGKGIKTCNITDKNGPLVSLKM 753

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               D + +V  N  ++  ++D I    R  +GV L    +G     + 
Sbjct: 754 VADEDDIMIVTANGIIIRTNVDGISTTGRNTQGVTLIRVNEGEEVATVA 802


>gi|323494793|ref|ZP_08099892.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546]
 gi|323310986|gb|EGA64151.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546]
          Length = 876

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/792 (32%), Positives = 397/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ + ++    R  IL+GL +A  NIDEII +IRN   P            
Sbjct: 355 DHRREVVTRRTIYELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKAGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPDWLEEQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V+E F  +        +         A
Sbjct: 475 DEYKALLDEIAELMHILASTERLMEVIREELESVREAFGDARRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I        +     + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIINILPLEEGERITAILPVSEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V    G   + +  +  K++ FS D++  M 
Sbjct: 655 KKTSLDQFANVRSNGLIAVNLRDDDSLIGVDITDGQSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|312792290|ref|YP_004025213.1| DNA gyrase subunit A [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179430|gb|ADQ39600.1| DNA gyrase, A subunit [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 809

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/751 (33%), Positives = 405/751 (53%), Gaps = 23/751 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSRIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+DN   +++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DIRDES ++   ++  
Sbjct: 246 TTIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L     P+V+ L  +L  ++ H++EV+ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVD-NQPKVLTLMDMLNLYIEHQKEVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+             RF  TE Q  AIL
Sbjct: 365 TRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISRFQFTEAQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIE------KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             RRT   +    D    +    +           +        +S K     ++ +  +
Sbjct: 482 --RRTKIIQDEHEDFEEEELIQEQETVITLTHFGYIKRLPLDTYKSQKRGGRGITGISTR 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D ++      T   IL  +  G+ + L A  +  G    +  AI  LI +  ++ I  
Sbjct: 540 EEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKITA 599

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
                      L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D +
Sbjct: 600 TMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGNDEI 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V  N   ++F+ + +  M R  +GV+  + +DG    V   K  +G   +      + 
Sbjct: 660 VLVSSNGYCVVFNENDVRVMGRSAQGVKGMTLEDGDFI-VGMEKASDGKYLLCVTENGFG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +          KRG  G L  K   ++GK +
Sbjct: 719 KRSEIEEYRKTKRGAKGVLTYKVTDKTGKIV 749



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 6/176 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              A+   + DSL         D I+L+S++G        ++       + +   + L  
Sbjct: 635 GKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRVMGRSAQGV-KGMTLED 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656
              IV          LL V+  G     E  E     R  K  L     +K   +V +  
Sbjct: 694 GDFIVGMEKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTDKTGKIVDIKM 753

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
               D + +       +   + Q+P   R  +GV+L     G I      +I    
Sbjct: 754 VNDDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDTGNIKVSSIARIKAEE 809


>gi|229542309|ref|ZP_04431369.1| DNA gyrase, A subunit [Bacillus coagulans 36D1]
 gi|229326729|gb|EEN92404.1| DNA gyrase, A subunit [Bacillus coagulans 36D1]
          Length = 824

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/765 (33%), Positives = 418/765 (54%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++    E N+  V+L   +   +L YA+S I  RAIPD+RDG KPVHRRI++AM ++G
Sbjct: 1   MADTP---ESNIVEVNLTQEMRTSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYAMHDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 58  MTPDKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDP 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +L+ +++D +DF+D Y+  + EP V PS+FPNLL NG+SGIAV
Sbjct: 118 AAAMRYTEARMSKISLELLRDINKDTIDFQDNYDGSEKEPAVLPSRFPNLLVNGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  +P+I+I++L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 178 GMATNIPPHQLGEVIDGILALSKDPDITIQELMEYIPGPDFPTAG-LIVGRSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RAR  +E+   G   I+VTE+PYQV K++LIE+IAEL+  KRI  + D+RDES
Sbjct: 237 GRGSITLRARVEIEQRSNGKESIIVTELPYQVNKAKLIERIAELVHEKRIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++++ +++  + M+T F +N+  L     P+V+ L   LK +L
Sbjct: 297 DRNGMRMVIEVRRDANANVILNNLYKHTAMQTTFGINLLALV-AGQPKVLNLKQALKFYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ EV+ RR++F ++  + R  IL+GL IA  +ID II +IR+       +  ++ +FS
Sbjct: 356 DHQEEVIRRRTAFELKKAEARAHILEGLRIALDHIDAIIQLIRSSQTTDIARTGLMEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+
Sbjct: 416 LSEKQAQAILDMRLQRLTGLEREKIEEEYRGLIQLIAELKAVLADEEKVLEIIREELLEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     + +      + +I +E I + +++ G+I+          K
Sbjct: 476 KERFNDE-----RRTEII--AASVDQIEDEDLIPQESIAITLTHNGYIKRLPISTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 529 RGGRGVQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKVYKKKGYEIPEYGRTAKGIPIVN 588

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++++ ++ I T      +     L   + KG +     +E       G   + +  E++
Sbjct: 589 LLEIDKDEWINTMIRVEDFVEDWFLFFTTKKGISKRTPVTEFANIRTNGLIAIHLKEEDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F    +  M R   GV+  +   G    V    + E
Sbjct: 649 LISVKLTDGHKDIIIGTKNGMLIRFPETDVRSMGRSATGVKGITL-SGDDEVVGMEILEE 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        +  RGG G        ++G  ++
Sbjct: 708 NDDVLIVTKNGYGKRTKGSEYRIQSRGGKGLKTCNITSKNGPLVA 752



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 8/183 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+H KE D L           I++ + +G     P  ++ S       +   
Sbjct: 632 NIRTNGLIAIHLKEEDELISVKLTDGHKDIIIGTKNGMLIRFPETDVRSMGRSATGV-KG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L+ + ++V   + +    +L+V+  G     + SE    +R GK      +   +   
Sbjct: 691 ITLSGDDEVVGMEILEENDDVLIVTKNGYGKRTKGSEYRIQSRGGKGLKTCNITSKNGP- 749

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     L+  ++  I  + R   GV+L    D      +     +
Sbjct: 750 LVAVKTVTGEEDIMLITAGGVLIRMAVGDISVLGRNTMGVKLIRLGDEEYVATVAKVEKD 809

Query: 708 GLT 710
              
Sbjct: 810 EEE 812


>gi|255658729|ref|ZP_05404138.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
 gi|260849121|gb|EEX69128.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
          Length = 808

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/752 (32%), Positives = 387/752 (51%), Gaps = 13/752 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              +  +  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+    
Sbjct: 2   DFGQGKIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGD AAA R
Sbjct: 62  PYKKSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++AEL+LQ +D++ VDF   Y+E   EP V P+KFP LL NGTSGIAVGMAT+
Sbjct: 122 YTEVRMSKIAELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L LID+P+ +I+ L++ I GPDFPT G ++  ++ I ++Y  GRG  
Sbjct: 182 IPPHNMCEVIDGTLMLIDHPDATIDDLMKVIKGPDFPTAG-LILGQDGIRQAYTTGRGVI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RA   +E +  G   I+VTE+PYQV K+RL+EKIA+L+  K+I  +  + DES     
Sbjct: 241 KMRANARIETLSNGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDRGGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  + ++++  ++  + ++  F + M  L     P+++ L  +L  ++AH+ +
Sbjct: 301 RIVIDLRRDANANVILNQLYKHTQLQDSFGVIMLALVD-GKPKILNLKEVLHYYIAHQED 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ + ++  + R  IL+GL IA  ++D +I  IR        +  ++S F L+E Q
Sbjct: 360 VITRRTRYDLKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALISGFKLSEKQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+LRL+ L  LE  +I+ E   +L   E+  ++L    +    I  E++ VK  F 
Sbjct: 420 AQAILDLRLQRLTGLEREKIEEEYQEVLKAIEEYKAILADEGRILAIIKDELKAVKAKFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
            +        T         A     +       +        R        +  +  KE
Sbjct: 480 DARRTRLTVDTSEIDVEDLIAEEDVVITLTHNNYIKRMALDTYRRQNRGGKGIKGMPTKE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  L   T   IL  +  G+ Y L A  +       +  AI  L+ L  ++ I   
Sbjct: 540 KDFVENLLITTTHHTILFFTNRGRVYHLKAYEIAEASRAAKGTAIINLLQLEKDEKITAV 599

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
                ++    L + + KG        E     + G   + +  ++++  V    G+   
Sbjct: 600 IQVKGFNPDAYLFMATKKGIVKKTSLVEFKNLHKGGLNAINLDDDDELIGVKFTDGERDM 659

Query: 663 VVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           ++G      ++F  D +  M R  +GV+  S  DG    +    +      +      Y 
Sbjct: 660 ILGTKWGMAIVFGEDDVRAMGRAARGVKGISLNDGDEV-IGMDTLSPNAEVLTVTAEGYG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +           RGG G +  K   ++G  + 
Sbjct: 719 KRTETSEYRAQNRGGKGLINLKVTEKTGDVIG 750



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 71/191 (37%), Gaps = 6/191 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++     +     H   L+A++  + D L           ++L +  G A      ++ +
Sbjct: 619 IVKKTSLVEFKNLHKGGLNAINLDDDDELIGVKFTDGERDMILGTKWGMAIVFGEDDVRA 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   I LN   +++         ++L V+++G     E SE  A  R GK  +
Sbjct: 679 MGRAARGV-KGISLNDGDEVIGMDTLSPNAEVLTVTAEGYGKRTETSEYRAQNRGGKGLI 737

Query: 643 KVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            +     + + + L V      + ++     ++  +I  I  +SR  +GV+L S  +  I
Sbjct: 738 NLKVTEKTGDVIGLRVVHPDQELMLITTEGIVIRTNISDISVISRNTQGVKLMSTGENDI 797

Query: 698 SDVICFKICEG 708
              +     + 
Sbjct: 798 VASMAVMDQKN 808


>gi|182416729|ref|ZP_02948128.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
 gi|182379386|gb|EDT76881.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
          Length = 835

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/754 (33%), Positives = 402/754 (53%), Gaps = 14/754 (1%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++++  +GL   
Sbjct: 2   DIFNEGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPE 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA 
Sbjct: 62  KGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS+FPNLL NG+SGIAVGMAT
Sbjct: 122 RYTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +  + LIDNPE+++  L+  I GPDFPTG   +  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLGEIIDGTIMLIDNPELTVLDLMTKIQGPDFPTGA-TIMGKAGIRAAYETGRGK 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA   +EE   G   IVVTEIPYQV K++LIE IA+L+  K+I  + D+RDES  D 
Sbjct: 241 IVVRADAEIEEEN-GRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  +P++++  ++  + ++  F + M  L     P+V+ +  IL  ++ +++
Sbjct: 300 MRIVVELKRDANPNVVLNLLYKHTKLQDSFGVIMLALV-NNEPRVLNIKEILSNYIDYQK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ F +   + R  IL+GL IA  NIDE+I+IIR+       K  ++ +F+L++ 
Sbjct: 359 EVITRRTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEKFALSDK 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RLR L  LE  +I+ E   L+ + E + S+L S ++    I  E+ ++K  +
Sbjct: 419 QATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILASEEKLLGVIKDELSDIKAKY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           S        +                 +       +   +     + +     + A+  K
Sbjct: 479 SDERRTKIEKVVNEIDIEDLIQEEDVVITLTNSGYIKRISADTYSAQRRGGKGIQAMTTK 538

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVT 604
           E D ++  +   T   +L  +  G+ Y L A  +       +      LI +  ++ I T
Sbjct: 539 EDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNVINLIAIEPDEKIQT 598

Query: 605 AFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                   K   L + +  G       SE     + G   L +   +++  V    GD +
Sbjct: 599 VLTVSDGKKEGFLFMATKNGIVKKTHISEFKNLRKNGLIALSLKDNDELLKVKNTYGDAN 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   + F+   +  M R   GV+  + KD  ++  +   + +G   +  +   +
Sbjct: 659 IMIVTQNGYAVRFNEKNVRAMGRTASGVKAINLKDDDVAVCMDIAV-DGEELLVISENGF 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +        +  RGGVG +  K   ++GK   +
Sbjct: 718 GKRTPVSEYKVQNRGGVGLITYKISEKTGKLTGA 751



 Score = 71.0 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               L AL  K+ D L    + +    I++++ +G A      N+ +
Sbjct: 619 IVKKTHISEFKNLRKNGLIALSLKDNDELLKVKNTYGDANIMIVTQNGYAVRFNEKNVRA 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 +    I+L  +   V   +     +LLV+S  G       SE     R G   +
Sbjct: 679 MGRTA-SGVKAINLKDDDVAVCMDIAVDGEELLVISENGFGKRTPVSEYKVQNRGGVGLI 737

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
                EK   +         D + ++  +   +  ++  I   +R   GV L    +   
Sbjct: 738 TYKISEKTGKLTGATICKVDDELMLINSSGVAIRINVADISVTNRSAMGVTLMRTTEDEK 797

Query: 698 SDVIC 702
              I 
Sbjct: 798 VVAIA 802


>gi|310639479|ref|YP_003944237.1| DNA gyrase, a subunit [Paenibacillus polymyxa SC2]
 gi|309244429|gb|ADO53996.1| DNA gyrase, A subunit [Paenibacillus polymyxa SC2]
          Length = 854

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 417/765 (54%), Gaps = 33/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ N      +    +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G
Sbjct: 1   MADQN---NSQIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 58  MSPDKPYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDM 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +L+ ++++ VDF   Y+ E++EPVV P+++PNLL NG  GIAV
Sbjct: 118 AAAMRYTEARLSKIAMEMLRDLNKETVDFMPNYDGEENEPVVLPARYPNLLVNGVGGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +   ALI+NP+I+  +L++YI GPDFPT G I+  R  I ++Y+ 
Sbjct: 178 GMATNIPPHNLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYIL-GRSGIRQAYQT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE+G  +  I+V E+PYQV K+RL+EKIAEL+  KRI  + D+RDES
Sbjct: 237 GRGSVTMRAKTTIEEIGNKA-RIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R ++P++++ ++F  + M++ F +NM  +     P+++ L  +L  +L
Sbjct: 296 DRTGMRIVIELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIV-NNEPKILNLKDVLYYYL 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H+ EV+ RR+ F ++  + R  IL+GL IA  ++DE+I++IR+       +  ++ RFS
Sbjct: 355 KHQIEVIRRRTEFDLKKAEARAHILEGLRIALDHLDEVISLIRSSQTAEAAREGLIERFS 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT  Q  AIL++RL+ L  LE  +I++E + L+ +  +   +L +     N I+ E+ E+
Sbjct: 415 LTLEQAQAILDMRLQRLTGLEREKIENEYNELIQKIMEYREILANEHLVLNIISEELNEL 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           K  F+       RRT   E++  +++ L + +I +E + + +++ G+I+          K
Sbjct: 475 KGRFAD-----DRRT---EITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQK 526

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                +  +  K+ D ++     ++   +L  +  GK Y + A  +        G  I  
Sbjct: 527 RGGRGVVGMDTKDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIIN 586

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI +   + I        +     L   +  G        +     + G   + +  ++ 
Sbjct: 587 LIQIEQGESINAVIPIEEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDA 646

Query: 650 MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G    ++       + F    +  M R   GV+  S  +      +     +
Sbjct: 647 LIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSMGRSATGVKGISLDESDAVIGMDIVNTD 706

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            L  +    + Y +    +   +  RGG G        ++G  + 
Sbjct: 707 -LDILIVTAKGYGKRTPAVDYRIQSRGGKGIKTINVTDKNGPVVG 750



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 104/323 (32%), Gaps = 19/323 (5%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               EI     +      +      +T      I  L + + R  +         +   E
Sbjct: 481 DRRTEITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDE 540

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEI-FSKSTDLGRRRTTFC------EVSRADKATL 510
                  + +          + +  +   +         R T        E   +  A +
Sbjct: 541 DFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVI 600

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRIL 564
                 ++      +  G I+              L A++ +E D+L           ++
Sbjct: 601 PIEEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMI 660

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + +  G +   P  ++ S       +   I L+ +  ++   + ++   +L+V++KG   
Sbjct: 661 IGTAQGMSIRFPESDVRSMGRSATGV-KGISLDESDAVIGMDIVNTDLDILIVTAKGYGK 719

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE 680
                +    +R GK    ++  +K   +  +  V   + + ++  +  L+  S+ +I  
Sbjct: 720 RTPAVDYRIQSRGGKGIKTINVTDKNGPVVGLKVVKAEEDLMIITASGTLIRTSMGEIST 779

Query: 681 MSR-GKGVRLQSYKDGGISDVIC 702
           M R  +GVRL + +D      +C
Sbjct: 780 MGRNTQGVRLINIRDDDSVATVC 802



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 104/326 (31%), Gaps = 20/326 (6%)

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
           ++L    +P+   +  +       R  V   RS  R       ++      + +L I   
Sbjct: 492 SILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDEDFVEHLFITNS 551

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
              +        V   +     +         + +L ++E+ +  + +  +         
Sbjct: 552 HHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVIPIEEFV----- 606

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
                +  +   A +   +K+         R+        R D A ++  + + +   ++
Sbjct: 607 -----EDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMII 661

Query: 524 ISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            + +G         V         +  +   E D++      +T   IL+++  G     
Sbjct: 662 GTAQGMSIRFPESDVRSMGRSATGVKGISLDESDAVIGMDIVNTDLDILIVTAKGYGKRT 721

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
           PA +       G+ I+ +   + N  +V   V  +   L+++++ G        EI    
Sbjct: 722 PAVDYRIQSRGGKGIKTINVTDKNGPVVGLKVVKAEEDLMIITASGTLIRTSMGEISTMG 781

Query: 636 RK--GKTFLKVSSEEKMKLVVKVTGD 659
           R   G   + +  ++ +  V +   +
Sbjct: 782 RNTQGVRLINIRDDDSVATVCRANKN 807


>gi|311070654|ref|YP_003975577.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
 gi|310871171|gb|ADP34646.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
          Length = 821

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/764 (33%), Positives = 418/764 (54%), Gaps = 31/764 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  NT     V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQNTP---QVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +  +++ +++  + ++T F +N+  L     P+V+ L   L  +L
Sbjct: 297 DRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVD-GEPKVLNLKQCLVHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARNGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L + ++    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKEILANEEKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+      +RRT     +   +    + +IE+E I V +++ G+I+          K
Sbjct: 476 KERFND-----KRRTEIV--TAGLETIEDEDLIERENIVVTLTHNGYIKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +     D ++  +   T D IL  S  GK Y      +       +   I  
Sbjct: 529 RGGKGVQGMGTNGDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEFGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +D    L   +  G +     S+       G   L +  +++
Sbjct: 589 LLEVEKGEWINAIIPVSEFDEKLYLFFTTKHGISKRTTLSQFANIRNNGLIALGLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F    + EM R   GV+  +  D  I   +   + +
Sbjct: 649 LMAVRLTDGTKQIIIGTKNGLLIRFPESDVREMGRTAAGVKGITLTDDDIVVGMEI-LED 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +           RGG G    K    +G+ +
Sbjct: 708 DSHVLIVTENGYGKRTPAEDYRTQSRGGKGLKTCKITENNGRLV 751



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 65/180 (36%), Gaps = 7/180 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL  +E D L        T +I++ + +G     P  ++        A    
Sbjct: 632 NIRNNGLIALGLREDDELMAVRLTDGTKQIIIGTKNGLLIRFPESDVREMGRTA-AGVKG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           I L  +  +V   + +    +L+V+  G        +    +R GK         +  ++
Sbjct: 691 ITLTDDDIVVGMEILEDDSHVLIVTENGYGKRTPAEDYRTQSRGGKGLKTCKITENNGRL 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICE 707
             V    G+  + ++  +  L+   I+ I    R  +GVRL    +   ++ V   +  +
Sbjct: 751 VTVKATKGEEDLMIITASGVLIRMDIEDISITGRVTQGVRLIRMGEQEHVATVALVEKND 810


>gi|260466877|ref|ZP_05813061.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029379|gb|EEW30671.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 750

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/736 (61%), Positives = 582/736 (79%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+    F K
Sbjct: 14  DHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQGFAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVGEV+GK HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 74  CARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNIDGDNAAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT VA  +L G+ EDAVD+R TYNEED EPVV P  FPNLLANG+SGIAVGMATSIP H
Sbjct: 134 RMTDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI++ +  + KL++++ GPDFPTGGIIV+SR SI+E+Y  GRGGFRVR+
Sbjct: 194 NAAELCDAALHLIEHRDAPVAKLMDFVQGPDFPTGGIIVDSRASILEAYETGRGGFRVRS 253

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E+ GRG+W IVVTEIPY VQK+RLIEKIAEL++A+++PLLEDIRDESAED+R+VL 
Sbjct: 254 RWSQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDIRDESAEDIRVVLV 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+RS+DP +LMES+F L+++E+RFPLNMNVLS G+VP V+ L G+L+EWL HRR+VL R
Sbjct: 314 PKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVLQEWLDHRRDVLVR 373

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+  I+RR+EIL G LIAYLNIDE+I IIR ED+PK VM++R+SLT+ Q +AILN+
Sbjct: 374 RSKHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEPKQVMMARWSLTDTQAEAILNM 433

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LRKLEE++I+ E D L  EK++I++LL S  +QW+ I  E+  +++ F   T+LG+
Sbjct: 434 RLRALRKLEEFEIRKEFDGLTTEKKQIEALLASDAKQWSTIKWEVTSIRDKFGPETELGK 493

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F +    D   +  AMIE+EP+TVV+S +GW+R++K H  DLS L FKEGDSLK+A
Sbjct: 494 RRTQFADAPEHDLTDIAHAMIEREPVTVVVSEKGWLRAMKGHLADLSTLTFKEGDSLKLA 553

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
            HA TTD++L+ +T GK YT+ A  L  GRGHGE I++++D++++QDIVTAFV+D   KL
Sbjct: 554 FHAQTTDKVLVFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQDIVTAFVHDPKRKL 613

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S   N FIV E E++ANTRKGK  + V + ++ K  V +TGDH+A+VGENRK+L+F+
Sbjct: 614 LLASYDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCVPLTGDHLAIVGENRKMLVFA 673

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +  IPEM RGKGVRLQ YKDGG+ D+  F +  GL+W DSA R++ RS  +L  W+G R 
Sbjct: 674 LSDIPEMGRGKGVRLQKYKDGGLLDLKPFTLETGLSWQDSADRTFTRSREELAEWIGARA 733

Query: 735 GVGSLVPKGFPRSGKF 750
             G +VPKGFPR+GKF
Sbjct: 734 SAGRMVPKGFPRTGKF 749


>gi|187477845|ref|YP_785869.1| DNA gyrase subunit A [Bordetella avium 197N]
 gi|115422431|emb|CAJ48956.1| DNA gyrase subunit A [Bordetella avium 197N]
          Length = 883

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/791 (31%), Positives = 391/791 (49%), Gaps = 58/791 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + E  L  + NPE +I++LLE I  PDFPTGG I+     + E YR GRG   +RA+   
Sbjct: 190 VVEGCLYCLRNPECTIDELLEIIPAPDFPTGG-IIYGMVGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G+   IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMDKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L     P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVD-GQPRLLNLKQLISYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F+++    R  +L+GL +A  NID+ IAII+    P                        
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARNWDSSLVREMLARA 427

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+E Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDVVGGRQAFRPEDLPEGFGLQGDGQYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC---EVSRADKATL 510
           ++     +  +L   ++    I  E++ +K  FS      RR        E+   D  T 
Sbjct: 488 VMDTIADLLDILARPERITTIIGEELQAIKAEFSSGAKDSRRSEIELNATELDTEDLITP 547

Query: 511 QQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
              ++       + S         K       A   KE D +     A+T D +L  S  
Sbjct: 548 MDMVVTMSHGGYIKSQPLSEYRSQKRGGRGKQATQMKENDWVDQLFIANTHDYLLCFSNR 607

Query: 570 GKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    +        G+ I  +  L   + I        +     + + +S+G   
Sbjct: 608 GRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFSDDHYVFMATSRGTVK 667

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               S+     + G   + +   + +       G H V +  ++ K + F  + +  M R
Sbjct: 668 KTALSDFSNPRKAGIIAVDLDEGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVRPMGR 727

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR    +D      +     E  + + +    Y +  +        RG  G +  +
Sbjct: 728 AARGVRGMMLEDSQSVIALLVAGDESQSVLTATENGYGKRTSIAEYTRHGRGTKGMIAIQ 787

Query: 743 GFPRSGKFLSS 753
              R+G+ + +
Sbjct: 788 TSSRNGRVVGA 798



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 5/178 (2%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 665 TVKKTALSDFSNPRKAGIIAVDLDEGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVRP 724

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  ++ ++  +    I      D +  +L  +  G       +E   + R  K  +
Sbjct: 725 MGRAARGVRGMMLEDSQSVIALLVAGDESQSVLTATENGYGKRTSIAEYTRHGRGTKGMI 784

Query: 643 KV---SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            +   S   ++   V V   D + ++     L+   + +I EM R  +GV L S  DG
Sbjct: 785 AIQTSSRNGRVVGAVLVNPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDG 842


>gi|319784192|ref|YP_004143668.1| DNA topoisomerase IV subunit alpha [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170080|gb|ADV13618.1| DNA topoisomerase IV, A subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 750

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/736 (61%), Positives = 585/736 (79%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+    F K
Sbjct: 14  DHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQGFAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVGEV+GK HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 74  CARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNIDGDNAAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT VA  +L G+ EDAVD+R TYNEED EPVV P  FPNLLANG+SGIAVGMATSIP H
Sbjct: 134 RMTDVATELLSGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI+N +  + KL++++ GPDFPTGGIIV+SR SI+E+Y  GRGGFRVR+
Sbjct: 194 NAAELCDAALHLIENRDAPVAKLMDFVQGPDFPTGGIIVDSRASILEAYETGRGGFRVRS 253

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+ GRG+W IVVTEIPY VQK+RLIEKIAEL++A+++PLLEDIRDESAEDVR+VL 
Sbjct: 254 KWFQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDIRDESAEDVRVVLV 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+RS+DP +LMES+F L+++E+RFPLNMNVLS G+VP V+ L G+L+EWL HRR+VL R
Sbjct: 314 PKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVLQEWLEHRRDVLVR 373

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+  I+RR+EIL G LIAYLNIDE+I IIR ED+PK VM++R+SLT+ Q +AILN+
Sbjct: 374 RSKHRLGEIERRLEILAGYLIAYLNIDEVIRIIREEDEPKQVMMARWSLTDTQAEAILNM 433

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LRKLEE++I+ E D L AEK++I++LL S ++QW  I  E+  +++ F   T+LG+
Sbjct: 434 RLRALRKLEEFEIRKEFDGLSAEKKQIEALLASNEKQWATIKWEVTNIRDKFGPETELGK 493

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F +    D   +  AMIE+EP+TVV+S +GW+R++K H  DLS L FKEGDSLK+A
Sbjct: 494 RRTQFADAPEHDLTDIAHAMIEREPVTVVVSEKGWLRAMKGHLADLSTLTFKEGDSLKLA 553

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
            HA TTD++L+ +T GK YT+ A  L  GRGHGE I++++D++++QDIVTAFV+D+  KL
Sbjct: 554 FHAQTTDKVLVFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQDIVTAFVHDAKRKL 613

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S   N FIV E E++ANTRKGK  + V + ++ K  + VTGDH+A+VGENRK+L+F+
Sbjct: 614 LLASHDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCIPVTGDHLAIVGENRKMLVFA 673

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + +IPEM RGKGVRLQ YKDGG+ D+  F +  GL+W DSA R++ RS  +L  W+G R 
Sbjct: 674 LAEIPEMGRGKGVRLQKYKDGGLLDLKPFTLESGLSWQDSADRTFTRSREELAEWIGARA 733

Query: 735 GVGSLVPKGFPRSGKF 750
             G +VPKGFPR+GKF
Sbjct: 734 SAGRMVPKGFPRTGKF 749


>gi|91793303|ref|YP_562954.1| DNA gyrase, A subunit [Shewanella denitrificans OS217]
 gi|91715305|gb|ABE55231.1| DNA gyrase subunit A [Shewanella denitrificans OS217]
          Length = 908

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/815 (32%), Positives = 405/815 (49%), Gaps = 83/815 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALID P +SIE+L+EYI GPDFPT   I   R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIDEPSLSIEQLMEYIPGPDFPTAASIN-GRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R++  +E    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRSKAEIETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKLQLVAQGWELGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +   ++ LTE Q  AIL LRL  L  LE  +I SE + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPEYGIRDGQYFLTEQQAQAILELRLHRLTGLEHEKILSEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ EV E +        RRT   E          + 
Sbjct: 480 LLIVIAGLLLILRSPERLMEVIKEELEEVLEQYGD-----VRRTIINENEIDMSL---ED 531

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+         ++ +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHTGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L+  + I        Y     +++ ++ 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYADDKFIIMATAH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID--- 676
           G       +        G   + +   +++  V    G D + +     K++ F+     
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITDGSDDIMLFSNEGKVVRFNEKARD 711

Query: 677 -----------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
                             +  M R   GVR    +DG     +     +G   +      
Sbjct: 712 SETGEVKIDAETGEEIIALRPMGRTATGVRGIKLEDGQKVVSLIVPKGDGA-ILTVTENG 770

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +           RG  G +  K   R+G  + +
Sbjct: 771 YGKRTELNEYPAKSRGTKGVVSIKVTERNGAVVGA 805


>gi|312795448|ref|YP_004028370.1| DNA gyrase subunit A [Burkholderia rhizoxinica HKI 454]
 gi|312167223|emb|CBW74226.1| DNA gyrase subunit A (EC 5.99.1.3) [Burkholderia rhizoxinica HKI
           454]
          Length = 867

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/787 (30%), Positives = 385/787 (48%), Gaps = 54/787 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +++P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGSETQPQVLPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+++P+ SI++L+E +  PDFPT G IV   + + + YR GRG   +RA+   
Sbjct: 190 VVDACQHLLNHPQASIDELIEIVPAPDFPTAG-IVYGVQGVRDGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K+I  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L+HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALID-GQPKLLNLRELLECFLSHRREVVTRRTL 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 YELRRARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQALMTRAWDSALVRDMLSRA 427

Query: 415 ---------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I +E   
Sbjct: 428 QGETPGGRDAFRPDGLAPIFGMQSDGLYKLSDTQAQEILQMRLQRLTGLEQDKITAEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    IA E+  +K  F                +          
Sbjct: 488 VMAQIADLLDILAKPERIRTIIADELVAIKAEFGDPRRSQIELNATELGTEDLITPQDMV 547

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A+  K+ D ++    A+T D IL  S  G+ Y
Sbjct: 548 VTMSHAGYIKSQPLSEYRAQKRGGRGKQAIVMKDDDWIETLFIANTHDYILCFSNRGRVY 607

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    +        G  I  +  L   + I        + +   + + +S G       
Sbjct: 608 WLKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFVFLATSLGTVKKTPL 667

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
                  RKG   + +   + +       G H V +  +  K + F  + +  M R  +G
Sbjct: 668 EAFSRPLRKGIIAVGLDDGDFLIGAQITDGQHDVMLFSDAGKAVRFDENDVRPMGREARG 727

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    ++G     +     E  + + +    Y +           RG  G +  +   R
Sbjct: 728 VRGMQLEEGQQVIALLVAGGESQSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSER 787

Query: 747 SGKFLSS 753
           +G+ +++
Sbjct: 788 NGRVVAA 794



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +    
Sbjct: 676 KGIIAVGLDDGDFLIGAQITDGQHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLEE 735

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I        +  +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 736 GQQVIALLVAGGESQSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRVVAAT 795

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V  D  + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 796 LVEPDSEIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 838


>gi|254498050|ref|ZP_05110810.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           drancourtii LLAP12]
 gi|254352715|gb|EET11490.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           drancourtii LLAP12]
          Length = 871

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/785 (32%), Positives = 397/785 (50%), Gaps = 48/785 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            + + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   
Sbjct: 3   YLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 123 TEVRMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A +AL+DNPE+S+++++E I GPDFPT   I+  R  I++ YR G+G   
Sbjct: 183 PPHNLTEVVNACIALVDNPELSLDEIMEIIPGPDFPTAA-IINGRAGIIQGYRTGKGRVV 241

Query: 252 VRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E         I++ E+PYQV K+RL+E+IAEL+  K+I  +  +RDES +   
Sbjct: 242 IRARTEIETDKDTNRQAIIIHELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R+   D+++ +++  + M+  F +NM  L     P+ + L  IL+ ++ HRRE
Sbjct: 302 RVVIEIKRNEVADVILNNLYAHTQMQNVFGINMVALVD-GQPRTLNLKQILEYFIKHRRE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------- 417
           V+ RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                
Sbjct: 361 VVTRRTLFELKKARARAHLLEGLGIALANIDEMIALIKQSPTPQDAKEGLLAKAWQPGMV 420

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    + + L+  Q  AIL LRL  L  LE+ +I  E + 
Sbjct: 421 KSMLERAGSNASRPDDLAAEFGLSDAGYRLSAAQAQAILELRLHRLTALEQDKILGEFEE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL   +++  +L S ++    I  E+ E+K  F          +                
Sbjct: 481 LLILIKELLDILASPERLMQVIRDELLEIKTQFGDERRTEITASQEDLTIEDLITEENVV 540

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V        ++ +      SA + K+ D +   + A T D +L  S  GK Y
Sbjct: 541 VTLSHQGYVKYQPLTAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNHGKLY 600

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEE 628
            L A  L   S    G  I  ++ L   ++I              + + +  G    V  
Sbjct: 601 WLKAYQLPLASRISRGRPIINILPLAEGEEINAMLPVREYQEGFYVFMATRNGTVKKVPL 660

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +        G   + +   +++  V    G   + +  +  K++ F   ++    R  +G
Sbjct: 661 NAFSRPRSNGIIAVDLDENDRLVGVDITDGTRDIMLFTDAGKVIRFDESKVRPTGRTARG 720

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    ++      +      G T + +    Y +  +     +  RGG G +  +   R
Sbjct: 721 VRGIRIEEDQAVISLIVAHPNG-TILTATEHGYGKRTDIDEYRVSGRGGQGVISIQVTER 779

Query: 747 SGKFL 751
           +GK +
Sbjct: 780 NGKVV 784



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 78/237 (32%), Gaps = 14/237 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
            ++  +   +     GR       ++  ++      + E +    V          K   
Sbjct: 601 WLKAYQLPLASRISRGRPIINILPLAEGEEINAMLPVREYQEGFYVFMATRNGTVKKVPL 660

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S  + A+   E D L        T  I+L +  GK        +         
Sbjct: 661 NAFSRPRSNGIIAVDLDENDRLVGVDITDGTRDIMLFTDAGKVIRFDESKVRPTGRTARG 720

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----S 645
           ++  I +  +Q +++  V      +L  +  G     +  E   + R G+  + +     
Sbjct: 721 VRG-IRIEEDQAVISLIVAHPNGTILTATEHGYGKRTDIDEYRVSGRGGQGVISIQVTER 779

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           + + ++ V     D   ++ +   L+ F + ++  + R  +GVRL +   G +   +
Sbjct: 780 NGKVVRSVQVNDSDEAMLITDKGTLVRFRVSELSIIGRNTQGVRLINVSSGELVVGM 836



 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 69/220 (31%), Gaps = 18/220 (8%)

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           +  +      +       +K+     S  +    IA ++ E   +       G R     
Sbjct: 638 REYQEGFYVFMATRNGTVKKVPLNAFSRPRSNGIIAVDLDENDRLVGVDITDGTR----- 692

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
                        M+  +   V+  +   +R     +  +  +  +E  ++   + AH  
Sbjct: 693 -----------DIMLFTDAGKVIRFDESKVRPTGRTARGVRGIRIEEDQAVISLIVAHPN 741

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             IL  +  G                G+ +  +     N  +V +   + + + ++++ K
Sbjct: 742 GTILTATEHGYGKRTDIDEYRVSGRGGQGVISIQVTERNGKVVRSVQVNDSDEAMLITDK 801

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
           G       SE+    R   G   + VSS E +  + K+  
Sbjct: 802 GTLVRFRVSELSIIGRNTQGVRLINVSSGELVVGMQKIED 841


>gi|260558232|ref|ZP_05830428.1| DNA gyrase subunit A [Enterococcus faecium C68]
 gi|260075406|gb|EEW63712.1| DNA gyrase subunit A [Enterococcus faecium C68]
          Length = 823

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 397/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|251790599|ref|YP_003005320.1| DNA gyrase subunit A [Dickeya zeae Ech1591]
 gi|247539220|gb|ACT07841.1| DNA gyrase, A subunit [Dickeya zeae Ech1591]
          Length = 877

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 398/793 (50%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  IS+E L+E+I GPDFPT   I+  +  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVINGCLAYIDDENISVEGLMEHIPGPDFPTAA-IINGKRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++  ++  + M+  F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNHLYSQTQMQVSFGINMVAL-HQGQPKLMTLKEILAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA +NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARERAHILEGLAIALVNIDPIIELIRHASTPAEAKIALVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LT+ Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGSVAAMLERAGDDAARPEWLEPEFGIHDGKYHLTDQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S ++    I  E+  ++E+++ +        +         
Sbjct: 475 LDEYKELLTQIAELLFILRSPERLMEVIREELVAIRELYNDARRTEITHNSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y L    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWLKVYQLPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ FS   +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  + +D      +     EG   +      + +        +  R   G + 
Sbjct: 715 GRTATGVRGINLQDDDRVVSLIVPRGEGD-ILTVTQNGFGKRTAVTEYPVKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVSERNGNVVGA 786



 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 17/166 (10%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV  +   +R++   +  +  ++ ++ D +   +       IL ++ +G
Sbjct: 692 NEVMLFSAEGKVVRFSESAVRTMGRTATGVRGINLQDDDRVVSLIVPRGEGDILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                            + +  +     N ++V A   DS  ++++++  G       SE
Sbjct: 752 FGKRTAVTEYPVKSRATKGVISIKVSERNGNVVGAVQVDSADQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSE---------------EKMKLVVKVTGD 659
           +    R   G T ++ + +               +++  VV V G+
Sbjct: 812 VSIVGRNTQGVTLIRTAEDERVVGLQRVAEPVEDDELDSVVPVDGE 857


>gi|220934707|ref|YP_002513606.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996017|gb|ACL72619.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 864

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/792 (33%), Positives = 415/792 (52%), Gaps = 65/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V+L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+   +KK
Sbjct: 6   KEVLHVNLEDEMRQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VDF D Y+  + EP VFP++ PNLL NG++GIAVGMAT+IP H
Sbjct: 126 RMAKLAHQLLADIDKETVDFVDNYDGSEREPSVFPTRLPNLLINGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +A +ALID+P I I +L+E++ GPDFPT   ++     I E+Y  GRG   +RA
Sbjct: 186 NMREVVDACVALIDDPSIGIPQLMEHLPGPDFPTAA-VINGATGIHEAYHTGRGRIYLRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE + G G   +VVTE+PYQV K+RL+EKIAEL+  K++  + ++RDES +D   ++
Sbjct: 245 RSHVETDEGSGRQSLVVTELPYQVNKARLLEKIAELVKEKKLEGISELRDESDKDGMRMV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P++++ +++  + M+  F +NM  L     P+++ L  +L+ +L HRREV+ 
Sbjct: 305 IELKRGEVPEVILNNLYQHTQMQNVFGINMVALVD-GQPRLLDLKQVLEAFLRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------ 415
           RR+ + ++    R  +L+GL +A  NIDE+IA+I+    P                    
Sbjct: 364 RRTIYDLRKARERAHVLEGLAVALANIDEVIALIKASASPAEAKAGLMGRAWKSGVVDEM 423

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                              +    + L++ Q  AIL+LRL  L  LE+ ++ SE   LL 
Sbjct: 424 LARAGAATSRPEDLDAAFGIHADGYYLSDAQAQAILDLRLHRLTGLEQEKVVSEYKELLE 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           + + +  +L S  +    I  E+ E++E F        RRT   E   +      + +I 
Sbjct: 484 KIDDLLDILGSPDRLMRVIRDELLEMREQFGDE-----RRTEIIE---SRLDLTLEDLIT 535

Query: 517 KEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+         R+ K      SA  FK+ D +   +   T D IL  S+
Sbjct: 536 EEDVVVTLSHAGYAKYQPVSAYRAQKRGGRGKSATSFKDEDFVDRLVVCSTHDTILCFSS 595

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNA 623
            GKAY L    L        G+ I  L+ L   + I              + + +S G  
Sbjct: 596 RGKAYWLKVYELPQGSRAARGKPIVNLLPLEEGERINAILPVREYLEDLYVFMSTSSGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +   +++  V    G   V ++    K + FS +Q+  M 
Sbjct: 656 KKTPLVDFSRPRSNGIIAVDLRDGDQLVDVAITDGSRDVMLLTSAGKAIRFSEEQVRPMG 715

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     +     VI   I +  T + +    Y +        +  RGG G +  
Sbjct: 716 RTACGVRGVRLAEDQR--VISLIIVDEGTVLIATENGYGKRTPPDDFPVHGRGGQGVIAI 773

Query: 742 KGFPRSGKFLSS 753
           +   R+G  + +
Sbjct: 774 QTGGRNGAVVGA 785


>gi|238751208|ref|ZP_04612702.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380]
 gi|238710482|gb|EEQ02706.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380]
          Length = 888

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  I+IE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE ++          T         
Sbjct: 475 LDEYKELLTIIGELIFILENPERLMEVIREELMAIKEQYNDPRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDKVVSLIIPRGDGD-ILTVTENGYGKRTEVTEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|157690805|ref|YP_001485267.1| DNA gyrase subunit A [Bacillus pumilus SAFR-032]
 gi|157679563|gb|ABV60707.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bacillus pumilus
           SAFR-032]
          Length = 839

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 413/765 (53%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  +T    NV+ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQHTP---NVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     FKKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 58  MTSDKPFKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  IL+ + +D +D++D Y+  + EP+V P++FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARLSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+  NPE++ ++L++ I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQII-GRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   IV+ EIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITLRAKSNIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +  +L+ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 297 DRNGMRIVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVD-GQPKVLSLKQCLEYYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ ++ RR+++ ++  + R  IL+GL IA  ++DE+IA+IR        +  ++  +S
Sbjct: 356 EHQKVIIRRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLMENYS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+
Sbjct: 416 LSEKQAQAILDMRLQRLTGLEREKIEDEYKGLVDLIAELKAILADNEKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +I  E I + +++ G+I+          K
Sbjct: 476 KERFND-----TRRTEIV--TAGIETIEDEDLIPVENIVITLTHNGYIKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +       +   I  
Sbjct: 529 RGGKGVQGMGTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +D    L   +  G +     S+       G   L +  E++
Sbjct: 589 LLEVEKGEWINAIIPVSEFDENSYLFFTTRHGVSKRTTLSQFANIRNNGLIALSLRDEDE 648

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G+  + +  +   L+ F    + EM R   GV+  +  +  I   +     +
Sbjct: 649 LMAVRLTNGEKQIIIGTKKGMLIRFDETDVREMGRTAAGVKGITLSEDDIVVGMEILEPD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +    + Y +   +    +  RGG G    K    +G  ++
Sbjct: 709 -ANVLIVTEKGYGKLTPEKEYRVQSRGGKGLKTCKITDNNGPLVA 752



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 8/178 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL  ++ D L      +   +I++ +  G        ++        A    
Sbjct: 632 NIRNNGLIALSLRDEDELMAVRLTNGEKQIIIGTKKGMLIRFDETDVREMGRTA-AGVKG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L+ +  +V   + +    +L+V+ KG   +  E E    +R GK        +    +
Sbjct: 691 ITLSEDDIVVGMEILEPDANVLIVTEKGYGKLTPEKEYRVQSRGGKGLKTCKITDNNGPL 750

Query: 651 KLVVKVT---GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
             V        + + ++  +  ++  ++  I    R  +GVRL    D      +   
Sbjct: 751 VAVKATNAEAEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEEHVATVALV 808


>gi|149928283|ref|ZP_01916526.1| DNA gyrase subunit A [Limnobacter sp. MED105]
 gi|149823012|gb|EDM82254.1| DNA gyrase subunit A [Limnobacter sp. MED105]
          Length = 870

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/788 (30%), Positives = 383/788 (48%), Gaps = 55/788 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+ +L  +D++ VDF   Y+  + EP V P++ PNLL NG+SGIAVGMAT++P HN++E
Sbjct: 130 IAQEMLLDIDKETVDFGPNYDGSEREPKVLPARLPNLLVNGSSGIAVGMATNMPPHNLKE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A L  ID PE +++ L+E I  PDFPT G I+   + + E YR GRG   +RA+   
Sbjct: 190 VVAACLYAIDAPECTVDDLIELIPAPDFPTAG-IIYGIQGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E+    G   I+V E+PYQV K  L+E+IAEL+  K+I  + DIRDES +D   V+    
Sbjct: 249 EDMDKGGRQSIIVDELPYQVNKKTLLERIAELVSEKKIEGISDIRDESDKDGIRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVILNNLYKNTQLQDTFGINMVALVD-GQPRLLNLRDLIFYFLRHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------------- 415
           F ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 FELRKARDRGHVLEGLAVALANIDEFIAIIKAAPTPPVAKADLVAKSWDSSIVREMLSRT 427

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q   ILN+RL+ L  LE+ +I +E   
Sbjct: 428 ELGDSGGAKAFRPEGLPARLGLQDDGMYRLSEVQAQEILNMRLQRLTGLEQDKILNEYKE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++ +   +  +L+  ++    I  E+  +   F+               +          
Sbjct: 488 VIDQIADLLDILSKPERINQIIKDELTSIGNEFADERRSMIEFNATELGTEDLITPQDMV 547

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 548 VTLSHSGYIKSQPLTEYRAQKRGGRGKQAATTKEDDWIDYLFVANTHDTILYFSNAGRVY 607

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVE 627
            L    +        G  I  +  L   + I          D    + + +S G     +
Sbjct: 608 WLKVYEVPQGSRTSRGRPIINMFPLAEGEKITAVLPVKSFEDEDKYVFMATSLGTVKKSK 667

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GK 685
            S+     ++G   + +   + +       G + V +  ++ K + F  + +  M R  +
Sbjct: 668 LSDFSRPMKRGIIAVNLDEGDFLIGAAMTNGTNDVMLFSDSGKAVRFDENDVRAMGRNAR 727

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR  + ++G     +     E  + + +    + +           RG  G +  +   
Sbjct: 728 GVRGMNLEEGQRVIAMLVAESEQQSVLTATENGFGKRTPVSEYTRHGRGTKGMIAIQTSE 787

Query: 746 RSGKFLSS 753
           R+GK +S+
Sbjct: 788 RNGKVVSA 795



 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 79/203 (38%), Gaps = 8/203 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +         +     + A++  EGD L  A   + T+ ++L S  GKA      ++ +
Sbjct: 662 TVKKSKLSDFSRPMKRGIIAVNLDEGDFLIGAAMTNGTNDVMLFSDSGKAVRFDENDVRA 721

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEIIANTR--KGK 639
              +   ++ + +L   Q ++   V +S  + +L  +  G       SE   + R  KG 
Sbjct: 722 MGRNARGVRGM-NLEEGQRVIAMLVAESEQQSVLTATENGFGKRTPVSEYTRHGRGTKGM 780

Query: 640 TFLKVSS-EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
             ++ S    K+   V V   D + ++     L+   + +I EM R  +GV L S  +G 
Sbjct: 781 IAIQTSERNGKVVSAVLVNPTDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDEGT 840

Query: 697 -ISDVICFKICEGLTWIDSAGRS 718
            +S +      +     ++    
Sbjct: 841 WLSGLQRIVESDAEDLGETDENG 863


>gi|317402978|gb|EFV83517.1| DNA gyrase subunit A [Achromobacter xylosoxidans C54]
          Length = 889

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/791 (31%), Positives = 386/791 (48%), Gaps = 58/791 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NP  S+++L+E I  PDFPTGG ++     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPACSVDELMEIIPAPDFPTGG-VIYGMSGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++       IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L     P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVD-GQPRLLNLKQMIDYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F+++    R  +L+GL +A  NID+ IAII+    P        +               
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVREMLSRA 427

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDTPGGRAAFRPDDLGAEFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC---EVSRADKATL 510
           +++    +  +L   ++    I  E++ +K  FS      RR        E+   D  T 
Sbjct: 488 IMSTIADLLDILARPERITTIIGEELQAIKAEFSTGAKDTRRSEIELNATELDTEDLITP 547

Query: 511 QQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
              ++       + S         K       A   KE D +     A+T D +L  S  
Sbjct: 548 TDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLCFSNR 607

Query: 570 GKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    +        G+ I  +  L   + I        +     + + +S+G   
Sbjct: 608 GRVYWLKVWEVPQGTRNSRGKPIVNMFPLAEGEKITVVLPVKEFSEDHYVFMATSRGTVK 667

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               S+     + G   + +   + +       G H V +  +  K + F  + +  M R
Sbjct: 668 KTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGR 727

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR    +D      +     E  + + +    Y +           RG  G +  +
Sbjct: 728 NARGVRGMMLEDTQNVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 787

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 788 TSSRNGKVVGA 798



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 62/167 (37%), Gaps = 5/167 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   +GD L  A        ++L S  GKA      ++     +   ++ +
Sbjct: 676 NPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRGM 735

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEK 649
           +  +    I      D T  +L  +  G       +E   + R  K  + +     + + 
Sbjct: 736 MLEDTQNVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGKV 795

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           +  V+ +  D + ++     L+   + +I EM R  +GV L +  DG
Sbjct: 796 VGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLINVDDG 842



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
              T  +L  + +G     P           + +  +   + N  +V A +   + ++++
Sbjct: 750 GDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGKVVGAVLVMPSDEIML 809

Query: 617 VSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +++ G       +EI    R   G T + V     +  V +V
Sbjct: 810 ITTGGVLVRTRVAEIREMGRATQGVTLINVDDGSSLSGVRRV 851


>gi|253989038|ref|YP_003040394.1| DNA gyrase subunit A [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253780488|emb|CAQ83650.1| dna gyrase subunit a [Photorhabdus asymbiotica]
          Length = 879

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/798 (32%), Positives = 395/798 (49%), Gaps = 54/798 (6%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG  ++S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MG--SMSD----IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 54

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MS +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 55  MSVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 114

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+
Sbjct: 115 VDGDSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPAKVPNLLINGS 174

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +  LA ID+  ISIE L+++I GPDFPT   I+  R  I 
Sbjct: 175 SGIAVGMATNIPPHNLSEVIDGCLAYIDDENISIEGLMQFIPGPDFPTAA-IINGRRGIQ 233

Query: 241 ESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           E+YR GRG   +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  + 
Sbjct: 234 EAYRTGRGKIYIRARAEIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGIS 293

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            +RDES +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  
Sbjct: 294 ALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKLLNLKD 352

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---- 415
           I+  ++ HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P      
Sbjct: 353 IISAFVCHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRHAPTPAEAKAA 412

Query: 416 ---------------------------------VMVSRFSLTENQVDAILNLRLRSLRKL 442
                                            V   ++ LTE Q  AIL+LRL+ L  L
Sbjct: 413 LVAQPWELGNVASMLERAGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGL 472

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  ++  E   LL    ++  +L S ++    I  E+  +K  ++ +        T    
Sbjct: 473 EHEKLLDEYRELLTLIGELLFILESPERLMEVIREELLAIKAQYNDARRTELTENTADIN 532

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      +       V         + +      SA   KE D ++  L A+T D 
Sbjct: 533 IEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIEKLLVANTHDT 592

Query: 563 ILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVV 617
           IL  S+ G+ Y +    L        G  I  L+ L  ++ I        Y+    + + 
Sbjct: 593 ILCFSSRGRLYWMKVYQLPEASRSARGRPIINLLPLEQDERITAILPVREYEDGLYVFMA 652

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           ++ G        +       G   + ++  +++  V    G + V +     K++ F  D
Sbjct: 653 TASGTVKKTALQDFSRPRSAGILAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFEED 712

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            +  M R   GVR            +     EG   +      Y +   +    +  R  
Sbjct: 713 AVRAMGRTATGVRGIKLNGKDKVVSLIIPRGEGE-ILTVTENGYGKRTAENEYPIKSRAT 771

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +  K   R+G  + +
Sbjct: 772 QGVISIKVSERNGNVVGA 789


>gi|226327847|ref|ZP_03803365.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198]
 gi|225203551|gb|EEG85905.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198]
          Length = 881

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/804 (32%), Positives = 411/804 (51%), Gaps = 67/804 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +S ++ +    +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ 
Sbjct: 1   MRDSGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNV 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DG
Sbjct: 61  LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGI
Sbjct: 121 DSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTEHIPAVMPTRIPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  LA +DN +I+IE+L+E+I GPDFPT   I+  R  I+++Y
Sbjct: 181 AVGMATNIPPHNLGEVIDGCLAYVDNEDITIEELMEHITGPDFPTAA-IINGRRGILDAY 239

Query: 244 RLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           R GRG   +RA+  +E +   G   I+VTEIPYQV K+RLIEKIAEL+  KRI  +  +R
Sbjct: 240 RTGRGKIYIRAQADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R    ++++  +F  + M+  F +NM  L     P+++ L  I+ 
Sbjct: 300 DESDKDGMRIVVEIKRDAVGEVVLNHLFSQTQMQVSFGINMVAL-HQGQPKLLNLKEIIS 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------- 415
            ++ HRREV+ RR+ + ++    R  IL+ L +A  NID +I +IR    P         
Sbjct: 359 AFIRHRREVVTRRTIYELRKARDRAHILEALAVALANIDPVIEMIRQAPNPAEAKAALIA 418

Query: 416 -------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                          V   ++ LTE Q  AIL+LRL+ L  LE 
Sbjct: 419 QPWDLGSVSTMLERAGDSNVARPEWLEPQYGVHDGKYYLTEQQAQAILDLRLQKLTGLEH 478

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            ++  E  +LL +  ++  +L S ++    I  E+  +K+ ++       RRT   E + 
Sbjct: 479 EKLLDEYRDLLLQIAELLHILRSPERLMEVIREELNAIKDQYNDP-----RRTEITENTA 533

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
                  + +I +E + V +S++G+          + +      SA   KE D +   L 
Sbjct: 534 D---INIEDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLV 590

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDST 611
           A+T D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        Y+  
Sbjct: 591 ANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQNERITAILPVREYEEG 650

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKL 670
             + + ++ G        +       G   + ++  +++  V      + V +   + K+
Sbjct: 651 KFVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNEGDELIGVDLTDSTNEVMLFSADGKV 710

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           + F+ D +  M R   GVR     D      +     +G   +      Y +        
Sbjct: 711 VRFAEDCVRPMGRTATGVRGMKLSDDDKVVSLIIPRGDGD-ILTVTENGYGKRTAQSEYP 769

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              R   G +  K   R+GK + +
Sbjct: 770 TKNRATQGVISIKVSERNGKVVGA 793



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 6/171 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S  + A++  EGD L       +T+ ++L S DGK        +         ++ +
Sbjct: 672 RPRSAGIIAVNLNEGDELIGVDLTDSTNEVMLFSADGKVVRFAEDCVRPMGRTATGVRGM 731

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKM 650
             L+ +  +V+  +      +L V+  G      +SE     R   G   +KVS    K+
Sbjct: 732 -KLSDDDKVVSLIIPRGDGDILTVTENGYGKRTAQSEYPTKNRATQGVISIKVSERNGKV 790

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
              ++V   D + ++     L+   + ++  + R  +GV L    +G +  
Sbjct: 791 VGAIQVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEGELVV 841


>gi|238761953|ref|ZP_04622926.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638]
 gi|238699681|gb|EEP92425.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638]
          Length = 888

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  I+IE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYVRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEEEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE+++ +        T         
Sbjct: 475 LDEYKELLTVIGELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|188026161|ref|ZP_02961100.2| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827]
 gi|188021857|gb|EDU59897.1| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827]
          Length = 873

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/803 (33%), Positives = 415/803 (51%), Gaps = 66/803 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +S ++ +    +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ 
Sbjct: 1   MRDSGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNV 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+   +KKSARIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DG
Sbjct: 61  LGNDWNKPYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGI
Sbjct: 121 DSAAAMRYTEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I+++Y
Sbjct: 181 AVGMATNIPPHNLGEVISGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIIDAY 239

Query: 244 RLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           R GRG   +RAR  VE +   G   I+V+EIPYQV K+RLIEKIAEL+  KR+  +  +R
Sbjct: 240 RTGRGKVYIRARAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  I+ 
Sbjct: 300 DESDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKILNLKDIIA 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------- 415
            ++ HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P         
Sbjct: 359 AFVRHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRRAPTPAEAKAGLIA 418

Query: 416 ------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                         V   ++ LTE Q  AIL+LRL+ L  LE  
Sbjct: 419 RPWDLGNVAAMLERAGDDAARPEWLEEQYGVHDGQYYLTEQQAQAILDLRLQKLTGLEHE 478

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++  E  +LL + E++  +L S ++    I  E+  ++E+++ +     RRT   E +  
Sbjct: 479 KLLEEYRDLLKQIEELLYILRSPERLMEVIREELEAIRELYNDA-----RRTEITENTAD 533

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I +E + V +S++G+          + +      SA   KE D ++  L A
Sbjct: 534 ---INIEDLISQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVA 590

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
           +T D IL  S+ G+ Y +    L        G  I  L+ L  ++ I        Y+   
Sbjct: 591 NTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY 650

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            + + ++ G        +       G   + ++  +++  V    G + V +     K++
Sbjct: 651 YVFMATASGTVKKTALQDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVV 710

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F+ D +  M R   GVR     D      +     EG   +      Y +   +     
Sbjct: 711 RFAEDAVRPMGRTATGVRGIRLADEDKVVSLIIPRGEG-HILTVTENGYGKRTAEQEYPT 769

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+G  + +
Sbjct: 770 KSRATQGVISIKVSERNGNVVGA 792


>gi|323342249|ref|ZP_08082481.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463361|gb|EFY08555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 835

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/764 (33%), Positives = 423/764 (55%), Gaps = 31/764 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
             NT   + +K  ++   +++ +++YA+S I  RA+PD+RDG KPVHRRI++AM+++G+ 
Sbjct: 2   EDNTQSYDKIKQRNISEEMKKSFVSYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEVIGK HPHGD +VYDS+VR+AQ F  RY LI G GNFG+IDGD AA
Sbjct: 62  SDKPYKKSARIVGEVIGKYHPHGDTAVYDSMVRMAQEFSYRYMLIDGHGNFGSIDGDGAA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM++++  +++ ++++ VDF D Y+ E+ EPVV PS+FPN+L NG +GIAVGM
Sbjct: 122 AMRYTEARMSKISMELIRDINKNTVDFIDNYDGEEREPVVLPSRFPNVLVNGGTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           AT+IP HN+ E+ +A +ALIDNP+I+I++ + +YI GPDFPTG  ++  R  I  ++  G
Sbjct: 182 ATNIPPHNLGEVIDATIALIDNPDITIKELMEDYIFGPDFPTGA-LLLGRSGIKSAFETG 240

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +RA+  +EE+  G   I+++EIPYQV K+ L+EKIA L+  K I  + D+RDES 
Sbjct: 241 RGSVVMRAKVDIEEMKNGKPRIIISEIPYQVNKATLVEKIATLVRDKEIDGITDLRDESN 300

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +   ++    R +  ++++  ++ L+ +++ F +NM  L     P+++ L  +L  +  
Sbjct: 301 REGIRIVVELRREVQAEVVLNQLYRLTALQSSFGVNMLALV-NGRPELLNLLQVLSHYRD 359

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSL 423
           H+ E++ RR+ F ++  + R  IL+GL+IA  +IDE+I+IIR+          +   F L
Sbjct: 360 HQIEIVTRRTQFELKKAEDRAHILQGLMIALDHIDEVISIIRSSKDDPEAITRLNEAFDL 419

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TE Q  A+L+++LR L  L+  ++++E + L      +  +L +  +    I  E+ E+K
Sbjct: 420 TEIQSKAVLDMQLRRLTGLQRDKVENEFNELTILIVDLKDILANHDRLLTIIKDELIEIK 479

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
             F        RR+   E   AD   L + +I  E I V ++  G+I+            
Sbjct: 480 TKFGD-----DRRSEIVE---ADIDMLDEDLIPVEDIVVTMTMNGYIKRTTVDSFNTQNR 531

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLL 593
               +  +   + D++   +   T D +LL +  GK Y +   N+ S     +   +  L
Sbjct: 532 GGKGVRGISTYDEDTVDQFIAMSTHDYLLLFTNLGKVYRIRGFNVPSSSRTSKGIPVVNL 591

Query: 594 IDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           ++L   + + T       D +     V+ +G    VE  E  +  + GK  + +  ++++
Sbjct: 592 LNLTEGETVKTLVKVAKDDESKYAFFVTKQGIVKRVEVQEFESIRQNGKIAITLREDDEL 651

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V    GD  + + G N K + F  +++  M R   GV   +  +G +  +      EG
Sbjct: 652 VGVRMTNGDNEIIIGGSNGKAVRFDENEVRSMGRTASGVIGFNVDEGEVVGIAT--DREG 709

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    + Y +  +       KRG  G        ++G  +S
Sbjct: 710 QYILAVTEKGYGKRTDIAEYRRTKRGAKGVKTVNITEKNGNLVS 753



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 5/108 (4%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT 657
           ++V          +L V+ KG     + +E     R  K    V+       +  +  V 
Sbjct: 699 EVVGIATDREGQYILAVTEKGYGKRTDIAEYRRTKRGAKGVKTVNITEKNGNLVSLRAVN 758

Query: 658 GDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
           GD  A++      ++   I  I    R   GVRL +  +      +  
Sbjct: 759 GDEEALIISNEGTVIRTEISNIGIYGRSTIGVRLINVGETDSVSQVAI 806


>gi|270160083|ref|ZP_06188739.1| DNA gyrase A subunit [Legionella longbeachae D-4968]
 gi|289165138|ref|YP_003455276.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           longbeachae NSW150]
 gi|269988422|gb|EEZ94677.1| DNA gyrase A subunit [Legionella longbeachae D-4968]
 gi|288858311|emb|CBJ12179.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           longbeachae NSW150]
          Length = 866

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/793 (33%), Positives = 417/793 (52%), Gaps = 64/793 (8%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            + + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+   
Sbjct: 3   YLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM++VA  +L  ++++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 123 TEVRMSKVAHALLADLEKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A +AL+D+PEI ++++++ I GPDFPT   I+  R  I++ YR G+G   
Sbjct: 183 PPHNLTEVINACIALVDDPEIGLDEIMQIIPGPDFPTAA-IINGRAGIIQGYRTGKGRAI 241

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E +   G   I++TE+PYQV K+RL+E+IAEL+  K+I  +  +RDES +   
Sbjct: 242 IRARTEIETDEDTGRQSIIITELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R    D+++ +++  + M+  F +NM  L     P+ + L  IL+ ++ HRRE
Sbjct: 302 RVVIELKRQEIADVILNNLYTQTQMQNVFGINMVALVD-GQPRTLNLKQILEYFIKHRRE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------ 418
           V+ RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                
Sbjct: 361 VVTRRTLFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKQALLAKLWQPGLV 420

Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q  AIL LRL  L  LE+ +I  E + 
Sbjct: 421 KTMLERAGSDASRPDDLAAEFGLSTEGYKLSEAQAQAILELRLHRLTALEQDKILDEFEE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL    ++  +L S ++    I  E  E+K  F        RRT   E   + +    + 
Sbjct: 481 LLKLIRELLEILASPERLMQVIRDEFVEIKTQFGDE-----RRTEIIE---SQEDLTIED 532

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S++G+         ++ +      SA + K+ D +   + A T D +L 
Sbjct: 533 LITEENVVVTLSHQGYVKYQPISAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLC 592

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSK 620
            S  GK Y L A  L   S    G  I  ++ L   ++I              + + + K
Sbjct: 593 FSNHGKLYWLKAYELPLASRISRGRPIINILPLAEGEEINAMLPVREYLDGYYVFMATKK 652

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679
           G    V  +        G   + +  ++ +  V    G   + +  +  K++ F  +++ 
Sbjct: 653 GTVKKVPLNAFSRPRSNGIIAVDLDDDDSLVGVDITDGSKDIMLFTDAGKVVRFDENKVR 712

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR    ++      +     +G T + +    Y +  +     +  RGG G 
Sbjct: 713 PMGRTARGVRGIRIEEEQAVISLVVAHPDG-TILTATENGYGKRTSIDEYRVSGRGGQGV 771

Query: 739 LVPKGFPRSGKFL 751
           +  +   R+GK +
Sbjct: 772 ISIQVNERNGKVV 784



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 76/237 (32%), Gaps = 14/237 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
            ++  +   +     GR       ++  ++      + E      V          K   
Sbjct: 601 WLKAYELPLASRISRGRPIINILPLAEGEEINAMLPVREYLDGYYVFMATKKGTVKKVPL 660

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S  + A+   + DSL        +  I+L +  GK        +         
Sbjct: 661 NAFSRPRSNGIIAVDLDDDDSLVGVDITDGSKDIMLFTDAGKVVRFDENKVRPMGRTARG 720

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----S 645
           ++  I +   Q +++  V      +L  +  G        E   + R G+  + +     
Sbjct: 721 VRG-IRIEEEQAVISLVVAHPDGTILTATENGYGKRTSIDEYRVSGRGGQGVISIQVNER 779

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           + + ++ V     D   ++ +   L+ F ++++  + R  +GVRL +   G     +
Sbjct: 780 NGKVVRSVQVTDADEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEKVVGM 836



 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 2/139 (1%)

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV  +   +R +   +  +  +  +E  ++   + AH    IL  + +G           
Sbjct: 703 VVRFDENKVRPMGRTARGVRGIRIEEEQAVISLVVAHPDGTILTATENGYGKRTSIDEYR 762

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GK 639
                G+ +  +     N  +V +       + ++++ KG     + +E+    R   G 
Sbjct: 763 VSGRGGQGVISIQVNERNGKVVRSVQVTDADEAMLITDKGTLVRFKVNELSVIGRNTQGV 822

Query: 640 TFLKVSSEEKMKLVVKVTG 658
             + VSS EK+  + K+  
Sbjct: 823 RLINVSSGEKVVGMQKIED 841


>gi|158319066|ref|YP_001511573.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs]
 gi|158139265|gb|ABW17577.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs]
          Length = 819

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/748 (31%), Positives = 402/748 (53%), Gaps = 13/748 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E+G+      KKS
Sbjct: 7   NIVPINIEKEMKNSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGITPDKPHKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD +VYD++VRLAQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 67  ARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDGAAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +++ +++D VD+R  ++E   EP V PSKFPNLL NG++GIAVGMAT+IP HN
Sbjct: 127 LSKMAMEMIRDINKDTVDYRPNFDESLKEPSVLPSKFPNLLVNGSNGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LIDN E  +E L+E+I GPDFPT    +   E I E+Y  GRG  +VRA+
Sbjct: 187 LGEVIDGVVTLIDNSEAQVEDLMEHIKGPDFPTAA-TIMGTEGIKEAYTTGRGRIKVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EEV +G   I++TEIPYQV K+RLIEKIAEL+  K++  + D+RDES  +   ++  
Sbjct: 246 ASIEEVNKGRQQIIITEIPYQVNKARLIEKIAELVRDKKVEGISDLRDESDREGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++  ++  + +E  F + M  +     P+V+ L  +L  +L H+++++ RR
Sbjct: 306 LKRDANANVVLNKLYKHTQLEDTFGVIMLAIV-NGEPKVLNLKEVLTHYLDHQKDIITRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GL IA  N+DE+I +IR  +  +     ++  F+L+E Q  AIL
Sbjct: 365 TQFDLNKAEERAHILEGLKIAIDNLDEVIKLIRGSENTQIAKTGLMETFTLSEKQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +++ E ++L+        +L + +   N I  E+ E+KE +      
Sbjct: 425 DMRLQKLTGLEIEKVEEEYEDLIKLINHFKEILANERLMLNIIKDELIEIKEKYGDERRT 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
              R              +  +       +        +S K     ++AL  +E D ++
Sbjct: 485 EITRAIGEINIEDMITEEEVVITLTHFGYIKRLPADTYKSQKRGGKGIAALTTREEDFVE 544

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY-- 608
             + + + D +L  +  G+ Y L    +   R   +  AI  LI L+ N+ +        
Sbjct: 545 NLITSSSHDYLLFFTNFGRVYKLNVYEIPEARRQAKGTAIVNLIPLSPNETVAATIPVGR 604

Query: 609 -DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGE 666
              +  L++ +  G     + S+  +  + G   + +  ++++  V     D  + ++  
Sbjct: 605 QFDSKYLVLATKNGIIKKTQLSQFESTRKSGLIAISIREDDELIKVKLTDEDSEIILITA 664

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
               + F    + +M R   GV+  +         +   + E    +  + + + +  + 
Sbjct: 665 QGMSIRFKEQDVRDMGRSAMGVKGINLSPKDHVVSMEI-VEENKDLLVISEKGFGKRTDT 723

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               L  RGG G        ++G  + +
Sbjct: 724 SEYRLQTRGGKGIKTYNVTGKTGPLVGA 751



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 6/186 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +I      +   +    L A+  +E D L           I+L++  G +      ++  
Sbjct: 619 IIKKTQLSQFESTRKSGLIAISIREDDELIKVKLTDEDSEIILITAQGMSIRFKEQDVRD 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   I+L+    +V+  + +    LLV+S KG     + SE    TR GK   
Sbjct: 679 MGRSAMGV-KGINLSPKDHVVSMEIVEENKDLLVISEKGFGKRTDTSEYRLQTRGGKGIK 737

Query: 643 KV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
                  +   +   +    D V ++     ++  ++  I ++ R  KGV L   ++   
Sbjct: 738 TYNVTGKTGPLVGAKIVTDEDEVLLINNYGTVIRLNVSNISKLGRNTKGVTLMRMEEDQS 797

Query: 698 SDVICF 703
              I  
Sbjct: 798 IITIAL 803


>gi|257899276|ref|ZP_05678929.1| DNA gyrase subunit A [Enterococcus faecium Com15]
 gi|293553552|ref|ZP_06674179.1| DNA gyrase, A subunit [Enterococcus faecium E1039]
 gi|293572723|ref|ZP_06683687.1| DNA gyrase, A subunit [Enterococcus faecium E980]
 gi|257837188|gb|EEV62262.1| DNA gyrase subunit A [Enterococcus faecium Com15]
 gi|291602307|gb|EFF32532.1| DNA gyrase, A subunit [Enterococcus faecium E1039]
 gi|291607215|gb|EFF36573.1| DNA gyrase, A subunit [Enterococcus faecium E980]
          Length = 823

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 398/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKEDQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGNEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 801 VVTMAAVEPE 810


>gi|212637855|ref|YP_002314375.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
 gi|212559335|gb|ACJ32390.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
          Length = 816

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/758 (32%), Positives = 410/758 (54%), Gaps = 28/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E VK VS+   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +
Sbjct: 1   MSERVKEVSISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYT
Sbjct: 61  KKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM++++  +L+ +++D +D++D Y+  + EP+V P++FPNLL NG+SGIAVGMAT+IP
Sbjct: 121 EARMSKISMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSSGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H + E+ +A L L+ +P+++I +L+EY+ GPDFPTG  I+  R  I ++Y  GRG   +
Sbjct: 181 PHQLGEVIDALLELMKDPDMTIAELMEYLPGPDFPTGAQII-GRGGIRKAYETGRGSITL 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E+   G   I+V E+PYQV K++LIEKIAEL+  K+I  + D+RDES      +
Sbjct: 240 RAKAEIEQKENGKEVIIVRELPYQVNKAKLIEKIAELVREKKIDGITDLRDESDRSGMRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++  + ++T F +NM  L     P+V+ L   L+ +L H++ V+
Sbjct: 300 VIEVRRDVSAHVVLNNLYKQTALQTGFGINMLALVD-GQPKVLNLKQCLQHYLDHQKIVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
            RR+ F +   + R  IL+GL IA  ++DE+I +IR           ++++F L+E Q  
Sbjct: 359 RRRTQFELNKAEARAHILEGLRIALDHLDEVIELIRQSATVDVAKEGLMTKFQLSEKQAQ 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I+ E + L+     + ++L   ++    I  E+ E+KE F+  
Sbjct: 419 AILDMRLQRLTGLEREKIEQEYEELVKLIAHLKAILADEQKVLQIIRDELLEIKEKFNDY 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT     +   +    + +I +E I V +++RG+I+          +     + 
Sbjct: 479 -----RRTEIV--NGGLETIDDEDLITRENIVVTLTHRGYIKRLPVSTYRSQRRGGRGIQ 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            ++  E D ++  +   T D +L  +  GK Y      +       +   I  L+++  +
Sbjct: 532 GMNTNEDDFVEHLVITSTHDIVLFFTNKGKVYKAKGYEIPEFSRTAKGIPIVNLLNIEKD 591

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I T      +     L   + +G A     S        G   + +   +++  V   
Sbjct: 592 EVINTVIAIEQFREDAFLFFTTKQGIAKRSPLSSFANIRNHGLIAIHLHEGDELISVKLT 651

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            G  H+ V  +N  L+ F    +  M R   GV+  +   G    V    +      +  
Sbjct: 652 DGHKHIIVGTKNGMLIRFPETDVRSMGRTAAGVKAITLCSGDEV-VGMESLNGDEEILIV 710

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +        +  RGG G        ++G  ++
Sbjct: 711 TRNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGDVVA 748



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/396 (12%), Positives = 118/396 (29%), Gaps = 20/396 (5%)

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           + +        +    + +  L+     ++      L + +AH + +L           D
Sbjct: 407 MTKFQLSEKQAQAILDMRLQRLTGLEREKIEQEYEELVKLIAHLKAILADEQKVLQIIRD 466

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +EI +     Y   + +   +   D    +      +T      I  L + + R    
Sbjct: 467 ELLEIKEKFN-DYRRTEIVNGGLETIDDEDLITRENIVVTLTHRGYIKRLPVSTYRSQRR 525

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI-FSKSTDLGRRRTTFC--- 500
                +  N   +      ++ S          + +  K   +         +       
Sbjct: 526 GGRGIQGMNTNEDDFVEHLVITSTHDIVLFFTNKGKVYKAKGYEIPEFSRTAKGIPIVNL 585

Query: 501 ---EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E        +      ++      + +G  +     S        L A+H  EGD L
Sbjct: 586 LNIEKDEVINTVIAIEQFREDAFLFFTTKQGIAKRSPLSSFANIRNHGLIAIHLHEGDEL 645

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++ + +G     P  ++ S      A    I L    ++V     +  
Sbjct: 646 ISVKLTDGHKHIIVGTKNGMLIRFPETDVRSMGRTA-AGVKAITLCSGDEVVGMESLNGD 704

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGEN 667
            ++L+V+  G       SE    +R GK      +   + + + +      + + ++  +
Sbjct: 705 EEILIVTRNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGDVVAVKTVTGEEDLMLMTAS 764

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++  ++  I  M R  +GV+L    +    + + 
Sbjct: 765 GVMIRMAVSDISIMGRNTQGVKLIRLDEENEQEYVA 800


>gi|257888090|ref|ZP_05667743.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733]
 gi|257824144|gb|EEV51076.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733]
          Length = 823

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 398/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKEDQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 801 VVTMAAVEPE 810


>gi|251781168|ref|ZP_04824088.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085483|gb|EES51373.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 849

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/761 (33%), Positives = 406/761 (53%), Gaps = 30/761 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  + +V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M  +GL    
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  + LIDNPE SI +L+  I GPDFPTG   +     I  +Y  GRG  
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGA-TIMGHAGIRSAYETGRGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+ TEIPYQV K++LIE IAEL+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKSEIEEEN-GRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++++  ++  + ++  F + M  L      +V+ L  +L  ++  ++E
Sbjct: 300 RIVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNET-KVLNLKEVLVHYIDFQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR++F +   + R  IL+GL IA  NID +I+IIRN       K  ++  F+L+E Q
Sbjct: 359 VITRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFNLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL ++LR L  LE  +I  E + LL + E + S+L S ++    I  E+ E+K  + 
Sbjct: 419 SQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLGVIKDELLEIKAKYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   +          + +I++E + + ++  G+I+          +     
Sbjct: 479 DE-----RRTDIEQ---DMNEINIEDLIQEEDVVITLTKSGYIKRISADVYSAQRRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLN 597
           + A+  KE D +       T   +L  +  G+ Y L A  +       +      LI + 
Sbjct: 531 IQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIAIE 590

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T            L + + +G       +E     + G   + +   +++  V 
Sbjct: 591 ADEKIQTVLTITDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLKVK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD +V  V +N   L F+   +  M R   GV+  + KD  I+  +   + E    +
Sbjct: 651 ITYGDANVMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKDDDIAVCMDIAVDEEE-LL 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +        +  RGGVG +  K   ++GK + +
Sbjct: 710 VISENGFGKRTPVSEYKIQHRGGVGLITYKISEKTGKLVGA 750



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 58/185 (31%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               L A++ +E D L      +    ++ ++ +G A      ++  
Sbjct: 618 IVKKTHLNEFRNLRKNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVRH 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 +    I L  +   V   +     +LLV+S  G       SE     R G   +
Sbjct: 678 MGRTA-SGVKAITLKDDDIAVCMDIAVDEEELLVISENGFGKRTPVSEYKIQHRGGVGLI 736

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
                EK   +         D + ++  N   +  ++  I + SR   GV L    +   
Sbjct: 737 TYKISEKTGKLVGATVCKVDDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEK 796

Query: 698 SDVIC 702
              I 
Sbjct: 797 IVAIA 801


>gi|322832014|ref|YP_004212041.1| DNA gyrase, A subunit [Rahnella sp. Y9602]
 gi|321167215|gb|ADW72914.1| DNA gyrase, A subunit [Rahnella sp. Y9602]
          Length = 883

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/793 (32%), Positives = 395/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPSVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA I++  ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIEDENISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++T F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKILGLKEILSAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRAAPTPAEAKAGLVARS 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVSAMLASAGDDAARPEWLEPQFGIHDGKYFLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L++  +    I  E+  +++ ++          T         
Sbjct: 475 LDEYKELLVQIAELLFILSNPDRLMEVIREELEAIRDQYNDPRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL+ S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILMFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 ++       G   + ++  +++  V    G D V +     K++ FS + +  M
Sbjct: 655 VKKTALTDFSRPRSAGIIAINLNEGDELIGVDLTDGKDEVMLFSAAGKVVRFSEEAVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +G     +     +G   +      + +           R   G + 
Sbjct: 715 GRTATGVRGIRLGEGDSVVSLIIPRGDGC-ILTVTQNGFGKRTESTEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVSERNGPVIGA 786


>gi|13476904|ref|NP_108473.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099]
 gi|14027665|dbj|BAB53934.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099]
          Length = 750

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/736 (61%), Positives = 584/736 (79%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+    F K
Sbjct: 14  DHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQGFAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVGEV+GK HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 74  CARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNIDGDNAAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT VA  +L G+ EDAVD+R TYNEED EPVV P  FPNLLANG+SGIAVGMATSIP H
Sbjct: 134 RMTDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI++ +  + KL++++ GPDFPTGGIIV+SR SI+E+Y  GRGGFRVR+
Sbjct: 194 NAAELCDAALHLIEHRDAPVSKLMDFVQGPDFPTGGIIVDSRASILEAYETGRGGFRVRS 253

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+ GRG+W IVVTEIPY VQK+RLIEKIAEL++A+++PLLEDIRDESAED+R+VL 
Sbjct: 254 KWSQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDIRDESAEDIRVVLV 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+RS+DP +LMES+F L+++E+RFPLNMNVLS G+VP V+ L G+L+EWL HRR+VL R
Sbjct: 314 PKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVLQEWLDHRRDVLIR 373

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+  I+RR+EIL G LIAYLNIDE+I IIR ED+PK VM++R+SLT+NQ +AILN+
Sbjct: 374 RSRHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEPKQVMMARWSLTDNQAEAILNM 433

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LRKLEE++I+ E D L AEK++I++LL S  +QW+ I  E+  +++ F   T+LG+
Sbjct: 434 RLRALRKLEEFEIRKEFDGLSAEKKQIEALLASDAKQWSTIKWEVTNIRDKFGPETELGK 493

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F +    D   +  AMIE+EP+TVV+S +GW+R++K H  DLS L FKEGDSLK+A
Sbjct: 494 RRTQFADAPEHDLTDIAHAMIEREPVTVVVSEKGWLRAMKGHLADLSTLTFKEGDSLKLA 553

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
            HA TTD++L+ +T GK YT+ A  L  GRGHGE I++++D++++QDIVTAFV+D   KL
Sbjct: 554 FHAQTTDKVLVFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQDIVTAFVHDPKRKL 613

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S   N FIV E E++ANTRKGK  + V + ++ K  V + GDH+A+VGENRK+L+F+
Sbjct: 614 LLASYDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCVPLIGDHLAIVGENRKMLVFA 673

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + +IPEM RGKGVRLQ YKDGG+ D+  F +  GL+W DSA R++ RS  +L  W+G R 
Sbjct: 674 LSEIPEMGRGKGVRLQKYKDGGLLDLKPFTLETGLSWQDSADRTFTRSREELAEWIGARA 733

Query: 735 GVGSLVPKGFPRSGKF 750
             G +VPKGFPR+GKF
Sbjct: 734 SAGRMVPKGFPRTGKF 749


>gi|4886573|dbj|BAA77788.1| DNA gyrase [Vibrio parahaemolyticus]
          Length = 878

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/792 (32%), Positives = 398/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFP    ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYINNEEITIDELMDYIPGPDFPAAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   LL E  ++  +L S ++    I  E+  V++ F+ +        +         A
Sbjct: 475 AEYKELLEEIAELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSADKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V   TG   + +  +  K++ FS D++  M 
Sbjct: 655 KKTSLDQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|292492652|ref|YP_003528091.1| DNA gyrase subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581247|gb|ADE15704.1| DNA gyrase, A subunit [Nitrosococcus halophilus Nc4]
          Length = 846

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/796 (32%), Positives = 413/796 (51%), Gaps = 65/796 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
             + + V  V++   +++ YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+  
Sbjct: 2   EEIAQEVFPVNIEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMQELGNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD  AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDAAVYDAIVRMAQPFSMRYPLVDGQGNFGSIDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+E + EP V P++ PNLLANG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKIAHELLADLNKETVDFVPNYDESEYEPAVLPTRIPNLLANGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+  A +ALID+P + I  ++ +I GPDFPT GI+  SR  I E+Y  GRG  
Sbjct: 182 IPPHNLGEVLSACIALIDDPSLDIAGIMAHIPGPDFPTAGIVNGSR-GIQEAYLTGRGRI 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  VE +   G   I+VTE+PY V K+RL+EKI EL+  K+I  +  +RDES ++ 
Sbjct: 241 FLRARTHVETDEASGRQSIIVTELPYMVNKARLLEKIGELVKEKKIEGIVGLRDESDKEG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R+  P++++  +++ + ++T F +NM  L     PQV+ L   L+ +L HR+
Sbjct: 301 MRMVVELRRNEMPEVVLNHLYLHTQLQTVFGINMVALVD-GQPQVLNLKLALEAFLRHRQ 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------- 416
           EV+ RR+ F ++    R  +L+GL IA  NID +IA+I+    P                
Sbjct: 360 EVVTRRTVFELRKARERAHVLEGLAIALTNIDPVIALIKASSSPSEARDGLIARSWPPGV 419

Query: 417 ------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+  Q  AIL++RL  L  LE+ +I  E  
Sbjct: 420 VIDMLQRAGAESSRPEGLEAVYGLQEGGYRLSPAQAQAILDMRLHRLTGLEQGKIIDEYQ 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++    ++  +L + ++    I  E+ E+++ + +      RRT   E+         +
Sbjct: 480 QVIELISELLEILANPERLMAVIREELVEMRQQYGE-----LRRT---EIQYNHVDLRLE 531

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I++E + V +S+ G+         RS K      SA   KE D +     A+T D +L
Sbjct: 532 DLIQEENVVVTLSHTGYAKYQALDAYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLL 591

Query: 565 LLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S+ GK Y      L        G+ I  L+ L   + I T      ++    + +V++
Sbjct: 592 CFSSRGKVYWKKVYELPQGTRTARGKPIVNLLPLEEGERINTVLPIREFEEGKYVFMVTA 651

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
            G       +        G   L++   +++       G+  + +     K++ FS  ++
Sbjct: 652 SGVVKKTSLAVFSRPRPSGIIALELREGDQLVGADLTDGEQEIMLFSSGGKVIRFSEQKV 711

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             M R  +GV+           VI   I    T + +    Y +        L  RGG G
Sbjct: 712 RPMGRTARGVKGMELPPEHR--VIALIIARNGTILTATELGYGKRTAIAEYRLQGRGGQG 769

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +  PR+G+ + +
Sbjct: 770 IISIQTTPRNGQVVGA 785



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 7/154 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S+ GK        +         +   ++L     ++   +      +L  +  
Sbjct: 692 QEIMLFSSGGKVIRFSEQKVRPMGRTARGV-KGMELPPEHRVIALIIAR-NGTILTATEL 749

Query: 621 GNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       +E     R G+  + +     + + +  V     D + ++     L+   + 
Sbjct: 750 GYGKRTAIAEYRLQGRGGQGIISIQTTPRNGQVVGAVQVEEEDEIVLITNRGTLIRTPVC 809

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            I  M R  +GV+L +  +G     +   + +G 
Sbjct: 810 DISLMGRNTQGVKLINLLEGERLVGVERIVEDGE 843



 Score = 44.8 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           Q+ M+      V+  +   +R +   +  +  +       +   + A     IL  +  G
Sbjct: 692 QEIMLFSSGGKVIRFSEQKVRPMGRTARGVKGMELPPEHRVIALIIA-RNGTILTATELG 750

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                           G+ I  +     N  +V A   +   ++++++++G        +
Sbjct: 751 YGKRTAIAEYRLQGRGGQGIISIQTTPRNGQVVGAVQVEEEDEIVLITNRGTLIRTPVCD 810

Query: 631 --IIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
             ++    +G   + +   E++  V ++  D  A +
Sbjct: 811 ISLMGRNTQGVKLINLLEGERLVGVERIVEDGEAAI 846


>gi|37526938|ref|NP_930282.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786371|emb|CAE15424.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 878

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/801 (32%), Positives = 406/801 (50%), Gaps = 68/801 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM +VA  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKVAHELLADLEKETVDFVPNYDGTEQIPEVMPTKVPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  ISIE L++YI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENISIEGLMQYIPGPDFPTAA-IINGRRGIQEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKIYIRARAEIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGVSALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKLLNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P           
Sbjct: 355 VCHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRFASTPAEAKAALVAQP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGSVATMLERAGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +K  +S +     RRT   E +    
Sbjct: 475 LDEYRELLTLIGELLFILENPERLMEVIREELLAIKAQYSDA-----RRTEITENTAD-- 527

Query: 508 ATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S++G+          + +      SA   KE D +   L A+T
Sbjct: 528 -INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDKLLVANT 586

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        Y+    +
Sbjct: 587 HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQNERITAILPVREYEEGLYV 646

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
            + ++ G        +       G   + ++  +++  V    G + V +     K++ F
Sbjct: 647 FMATASGTVKKTALQDFSRPRSAGILAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRF 706

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           + + +  M R   GVR            +     EG   +      Y +   +    +  
Sbjct: 707 AEEAVRSMGRTATGVRGIKLNGEDKVVSLIIPRGEGE-ILTVTENGYGKRTAENEYPIKS 765

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           R   G +  K   R+G  + +
Sbjct: 766 RATQGVISIKVSERNGNVIGA 786


>gi|237669626|ref|ZP_04529604.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|237654860|gb|EEP52422.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 835

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/754 (33%), Positives = 402/754 (53%), Gaps = 14/754 (1%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++++  +GL   
Sbjct: 2   DIFNEGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPE 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA 
Sbjct: 62  KGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS+FPNLL NG+SGIAVGMAT
Sbjct: 122 RYTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +  + LIDNPE+++  L+  I GPDFPTG   +  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLGEIIDGTIMLIDNPELTVLYLMTKIQGPDFPTGA-TIMGKAGIRAAYETGRGK 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA   +EE   G   IVVTEIPYQV K++LIE IA+L+  K+I  + D+RDES  D 
Sbjct: 241 IVVRADAEIEEEN-GRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  +P++++  ++  + ++  F + M  L     P+V+ +  IL  ++ +++
Sbjct: 300 MRIVVELKRDANPNVVLNLLYKHTKLQDSFGVIMLALV-NNEPRVLNIKEILSNYIDYQK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ F +   + R  IL+GL IA  NIDE+I+IIR+       K  ++ +F+L++ 
Sbjct: 359 EVITRRTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEKFALSDK 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RLR L  LE  +I+ E   L+ + E + S+L S ++    I  E+ ++K  +
Sbjct: 419 QATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILASEEKLLGVIKDELSDIKAKY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           S        +                 +       +   +     + +     + A+  K
Sbjct: 479 SDERRTKIEKVVNEIDIEDLIQEEDVVITLTNSGYIKRISADTYSAQRRGGKGIQAMTTK 538

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVT 604
           E D ++  +   T   +L  +  G+ Y L A  +       +      LI +  ++ I T
Sbjct: 539 EDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNVINLIAIEPDEKIQT 598

Query: 605 AFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                   K   L + +  G       SE     + G   L +   +++  V    GD +
Sbjct: 599 VLTVSDGKKEGFLFMATKNGIVKKTHISEFKNLRKNGLIALSLKDNDELLKVKNTYGDAN 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   + F+   +  M R   GV+  + KD  ++  +   + +G   +  +   +
Sbjct: 659 IMIVTQNGYAVRFNEKNVRAMGRTASGVKAINLKDDDVAVCMDIAV-DGEELLVISENGF 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +        +  RGGVG +  K   ++GK   +
Sbjct: 718 GKRTPVSEYKVQNRGGVGLITYKISEKTGKLTGA 751



 Score = 71.0 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               L AL  K+ D L    + +    I++++ +G A      N+ +
Sbjct: 619 IVKKTHISEFKNLRKNGLIALSLKDNDELLKVKNTYGDANIMIVTQNGYAVRFNEKNVRA 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 +    I+L  +   V   +     +LLV+S  G       SE     R G   +
Sbjct: 679 MGRTA-SGVKAINLKDDDVAVCMDIAVDGEELLVISENGFGKRTPVSEYKVQNRGGVGLI 737

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
                EK   +         D + ++  +   +  ++  I   +R   GV L    +   
Sbjct: 738 TYKISEKTGKLTGATICKVDDELMLINSSGVAIRINVADISVTNRSAMGVTLMRTTEDEK 797

Query: 698 SDVIC 702
              I 
Sbjct: 798 VVAIA 802


>gi|312881692|ref|ZP_07741470.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370755|gb|EFP98229.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 871

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/792 (32%), Positives = 399/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVLNYDGTEQIPAVLPTKVPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    L  IDN +I+I++L+E+I GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLTEVINGCLEYIDNEDITIDELMEFIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   IVV+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKADIETDKNGKETIVVSEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALN-NGQPQLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKLGLTARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL+ L  LE  +I 
Sbjct: 415 NLGNVAAMLERAGTDAARPEWLEAQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ F           +         A
Sbjct: 475 DEYKTLLDEIAELMIILASTERLMEVIREELIAVRDGFGDERRTEITAASHDIDLEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRNARGKPIVNILPLEEGERITAILPVDQFCEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +  ++ +  V   TGD  + +  +  K++ FS D++  M 
Sbjct: 655 KKTPLTQFANVRANGLIAVNLRDDDSLIGVDITTGDSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     +G   +      Y +        +  R   G +  
Sbjct: 715 RTAAGVRGMKLNDDDQVVSLIVPANDGD-VLTVTQNGYGKRTQLSEYPVKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSDRNGPVVGA 785



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 115/352 (32%), Gaps = 22/352 (6%)

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
              E     ++         +   + +++   +   +   I ++ + +       S T+ 
Sbjct: 512 FGDERRTEITAASHDIDLEELIAREDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKM 571

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           + +  +   L  +    +  +           +     L S   +   I   +       
Sbjct: 572 KEEDYIERLL--VANTHDNILCFSTRGKTYRLKVYQLPLASRNARGKPIVNIL------- 622

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
               + G R T    V +  +       +     TV  +      +++++   L A++ +
Sbjct: 623 --PLEEGERITAILPVDQFCEDKFI--FMATGDGTVKKTPLTQFANVRAN--GLIAVNLR 676

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           + DSL           I+L S  GK       + +   G   A    + LN +  +V+  
Sbjct: 677 DDDSLIGVDITTGDSDIMLFSKAGKVVRFS-EDKVRAMGRTAAGVRGMKLNDDDQVVSLI 735

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVA 662
           V  +   +L V+  G     + SE     R   G   +KVS      +  V  V GD + 
Sbjct: 736 VPANDGDVLTVTQNGYGKRTQLSEYPVKGRATQGVVSIKVSDRNGPVVGAVQVVEGDEMM 795

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWI 712
           ++ +   L+   + ++ ++ R  +GV L    +   +  +      +    +
Sbjct: 796 MITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDELDETDLV 847


>gi|164510806|emb|CAK18886.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
          Length = 878

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/762 (34%), Positives = 418/762 (54%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSV 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA+  +E  G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 IMRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     PQ++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPQLINLKQALYHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ + ++    R  IL+GL IA  +IDEII IIR  +        + SRF+L+E 
Sbjct: 361 EVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT              + +I +E I + +S+  +I+ L + +         
Sbjct: 481 GD-----DRRTEI--QLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D++L  +  G+ Y L    +       +   I  +I+L
Sbjct: 534 GVQGMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + ++ I T             L+ V+ KG       S      R GK  +K   ++++  
Sbjct: 594 DQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIA 653

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V    G+ H+ +      L+ F    +  MSR   GV+    +DG     +     +   
Sbjct: 654 VRLTDGEKHILIGTAQASLIRFKEADVRAMSRIAAGVKGIRLRDGDEVIGLDVADDDNQD 713

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +    + Y +  +     L  RGG+G    K   R+G+ +
Sbjct: 714 KILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLV 755



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 70/217 (32%), Gaps = 14/217 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
               + +  +E   V ++ +G I+        + +     A+ F++ D L          
Sbjct: 602 MIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEK 661

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST--CKLLVVSS 619
            IL+ +           ++ +      A    I L    +++   V D     K+LVV+ 
Sbjct: 662 HILIGTAQASLIRFKEADVRAMSRIA-AGVKGIRLRDGDEVIGLDVADDDNQDKILVVTE 720

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSI 675
           KG        +   + R G         E+   +  +  V GD  + VV     ++   +
Sbjct: 721 KGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIRMEV 780

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             I    R  +GVRL    +      +     E    
Sbjct: 781 SNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDI 817


>gi|117920417|ref|YP_869609.1| DNA gyrase subunit A [Shewanella sp. ANA-3]
 gi|117612749|gb|ABK48203.1| DNA gyrase subunit A [Shewanella sp. ANA-3]
          Length = 918

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/812 (30%), Positives = 390/812 (48%), Gaps = 72/812 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI +P +SIE+L+E+I GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K++LIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRALAEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +    + LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+   +  +                        
Sbjct: 480 LLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +      +A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 540 VTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 599

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  L+ L+  + I        Y     +++ +S G       
Sbjct: 600 WLKVYQLPLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDKYIIMATSNGTVKKTAL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ---------- 677
           +        G   + +   +++  V    GD  + +     K++ F   +          
Sbjct: 660 TAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGN 719

Query: 678 ---------------IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
                          +  M RG  GVR    ++G     +     +G   +      Y +
Sbjct: 720 AVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQRVVSLIVPKGDGA-ILTVTENGYGK 778

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      R   G +  K   R+G  + +
Sbjct: 779 RTELSEYPSKSRATKGVVSIKVSERNGAVVGA 810


>gi|113970257|ref|YP_734050.1| DNA gyrase subunit A [Shewanella sp. MR-4]
 gi|113884941|gb|ABI38993.1| DNA gyrase subunit A [Shewanella sp. MR-4]
          Length = 946

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/812 (30%), Positives = 390/812 (48%), Gaps = 72/812 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 28  TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 87

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 88  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 147

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 148 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 207

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI +P +SIE+L+E+I GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 208 IPPHNLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 266

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K++LIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 267 VMRALAEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGM 326

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 327 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 385

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 386 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHV 445

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +    + LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 446 QGMLEKAGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 505

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+   +  +                        
Sbjct: 506 LLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVV 565

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +      +A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 566 VTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 625

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  L+ L+  + I        Y     +++ +S G       
Sbjct: 626 WLKVYQLPLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDKYIIMATSNGTVKKTAL 685

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ---------- 677
           +        G   + +   +++  V    GD  + +     K++ F   +          
Sbjct: 686 TAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVSVLDENGN 745

Query: 678 ---------------IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
                          +  M RG  GVR    ++G     +     +G   +      Y +
Sbjct: 746 PVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQKVVSLIVPKGDGA-ILTVTENGYGK 804

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      R   G +  K   R+G  + +
Sbjct: 805 RTELSEYPSKSRATKGVVSIKVSERNGAVVGA 836


>gi|300692121|ref|YP_003753116.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum PSI07]
 gi|299079181|emb|CBJ51849.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum PSI07]
          Length = 885

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/796 (30%), Positives = 384/796 (48%), Gaps = 63/796 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ V+F   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E
Sbjct: 130 IAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLRE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NP+ ++++L+E I  PDFPT G I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLRNPDATVDELIELIPAPDFPTAG-IIYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KR+  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVD-GQPRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  IL+GL +A  NIDE IAII+    P                        
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVREMLSRA 427

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTAGGRAAYRPEGLLPVFGMQDDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++ +   +  +L   ++    I  E+  ++  F                +          
Sbjct: 488 VMEQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLITPQDLV 547

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 548 VTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLY 607

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    +        G  I  +  L+  + I        +D    + + +SKG       
Sbjct: 608 WLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKGTVKKTAL 667

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E     + G   + +   + +       G H V +  +  K + F  + +  M R  +G
Sbjct: 668 TEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG 727

Query: 687 VRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           VR  + ++G     +     E           + + +    Y +           RG  G
Sbjct: 728 VRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYTRHGRGTKG 787

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK +++
Sbjct: 788 MIAIQTSERNGKVVAA 803



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 661 TVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP 720

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L   Q ++   V  +             +L  +  G       SE  
Sbjct: 721 MGRQARGVRGM-NLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYT 779

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     + + +   +    D + ++     L+   +D+I EM R  +GV
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGV 839

Query: 688 RLQSYKDG 695
            L +  +G
Sbjct: 840 TLIAVGEG 847


>gi|114047554|ref|YP_738104.1| DNA gyrase subunit A [Shewanella sp. MR-7]
 gi|113888996|gb|ABI43047.1| DNA gyrase subunit A [Shewanella sp. MR-7]
          Length = 944

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/812 (30%), Positives = 390/812 (48%), Gaps = 72/812 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 28  TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 87

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 88  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 147

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 148 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 207

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI +P +SIE+L+E+I GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 208 IPPHNLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 266

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K++LIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 267 VMRALAEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGM 326

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 327 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 385

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 386 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHV 445

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +    + LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 446 QGMLEKAGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 505

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+   +  +                        
Sbjct: 506 LLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVV 565

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +      +A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 566 VTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 625

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  L+ L+  + I        Y     +++ +S G       
Sbjct: 626 WLKVYQLPLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDKYIIMATSNGTVKKTAL 685

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ---------- 677
           +        G   + +   +++  V    GD  + +     K++ F   +          
Sbjct: 686 TAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGN 745

Query: 678 ---------------IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
                          +  M RG  GVR    ++G     +     +G   +      Y +
Sbjct: 746 PVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQKVVSLIVPKGDGA-ILTVTENGYGK 804

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      R   G +  K   R+G  + +
Sbjct: 805 RTELSEYPSKSRATKGVVSIKVSERNGAVVGA 836


>gi|294340564|emb|CAZ88949.1| DNA gyrase subunit A [Thiomonas sp. 3As]
          Length = 868

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/782 (29%), Positives = 382/782 (48%), Gaps = 49/782 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+   +   +KKSARI
Sbjct: 10  PISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+ NP  +IE+L+E +  PDFPT G I+     + ++YR GRG   +RAR   
Sbjct: 190 VLDACLHLLRNPGATIEELMERVPAPDFPTAG-IIYGTSGVRDAYRTGRGRVVMRARCHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    I+V E+PYQV K  L+E+IAEL+  K+I  +  I+DES +    V+    
Sbjct: 249 EDLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  ++  +L+HRRE++ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKQTQLQDTFGVNMVALVD-GQPRLLNLQQMIAAFLSHRREIITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------------- 416
           F ++    R  +L+GL +A  N+D +I +I+    P                        
Sbjct: 368 FDLRKARERGHVLEGLAVALANVDRMIELIKAAPTPPVAKERLLAQAWEPGEARAMLSRV 427

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q   IL +RL+ L  LE+ +I  E  +++ + 
Sbjct: 428 EGDITQFQPDDLDARYGLKPDGYYLSETQAQEILQMRLQRLTGLEQDKIVGEYKDVMEQI 487

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  ++  F  +         +              +    
Sbjct: 488 ADLLDILAKPERMTEIITTEMSALRAEFGDARRSHIEVNAYDIDVEDLITPQDLVVTISH 547

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ +       A   KE D ++    A+T D +L  S  G+ Y +   
Sbjct: 548 SGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRGRVYWMKVY 607

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
                     G+ +  L  L   + I T      +D    + + +++G       +  + 
Sbjct: 608 ESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFDEQHYVFMATARGTVKKTPLTAFVN 667

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
               G   + +  ++ +       G H V +  +  K + F    +  M R  +GVR   
Sbjct: 668 RRTAGIIAVALDEDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPMGREARGVRGMQ 727

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +       +     E  + + +    Y +  +        RG  G +  +   R+GK +
Sbjct: 728 LEADQSVIALLVAEDETQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQTSERNGKVV 787

Query: 752 SS 753
           ++
Sbjct: 788 AA 789



 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 66/185 (35%), Gaps = 8/185 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  + A+   E D L  A        ++L S  GKA      ++         ++ +
Sbjct: 667 NRRTAGIIAVALDEDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPMGREARGVRGM 726

Query: 594 IDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEE 648
             L  +Q ++   V  D T  +L  +  G       +E   + R  K  + +     + +
Sbjct: 727 -QLEADQSVIALLVAEDETQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQTSERNGK 785

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK-DGGISDVICFKIC 706
            +   +  T D + ++ +   L+   +++I EM R  +GV L +      +  V      
Sbjct: 786 VVAACLVRTSDEIMLITDTGVLVRTRVEEIREMGRATQGVTLIALDAKAHLIQVQPVVEA 845

Query: 707 EGLTW 711
           +    
Sbjct: 846 DDDEL 850


>gi|150396031|ref|YP_001326498.1| DNA topoisomerase IV subunit A [Sinorhizobium medicae WSM419]
 gi|150027546|gb|ABR59663.1| DNA topoisomerase IV, A subunit [Sinorhizobium medicae WSM419]
          Length = 758

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/745 (65%), Positives = 608/745 (81%), Gaps = 8/745 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMGL   ++FK
Sbjct: 12  DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE
Sbjct: 72  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P  FPNLLANG SGIAVGMATSIP 
Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191

Query: 194 HNVQEICEAALALIDNPEISI--------EKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           HN  E+C+AAL LI +P+  +              I GPDFPTGG+IVESR S++ESYR 
Sbjct: 192 HNAHELCDAALYLIRHPDAPLEALLFDPANPQRGGIEGPDFPTGGVIVESRTSMMESYRT 251

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES
Sbjct: 252 GRGGFRVRARWTVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 311

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL
Sbjct: 312 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 371

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           AHRREVL RRS  R+ AIDRR+EIL G LIAYLNIDE+I IIR ED+PK VM+ RF LT+
Sbjct: 372 AHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFGLTD 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE++I++E D L  EK +I++LL S  +QW  +A EI EVK+ 
Sbjct: 432 VQAEAILNMRLRSLRKLEEFEIRTEFDALSKEKAEIEALLASDDKQWQAVAWEIGEVKKK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+K+T+LG+RR+TF +   AD   +QQAMIEKEPITVVIS +GWIR+LK H  D ++L F
Sbjct: 492 FAKATELGKRRSTFADAPEADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTTSLQF 551

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD+LK++  A TTD+IL+ +T GK YTL +  L  GRGHGE +++++D+ ++QD++TA
Sbjct: 552 KDGDALKVSFPAQTTDKILIFTTGGKVYTLGSDKLPGGRGHGEPLRIMVDMENDQDVLTA 611

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+D   KL+V S+ GN F+V ES+I+ANTRKGK  + VS  ++ KLVV V GDH+AVVG
Sbjct: 612 FVHDPARKLVVSSTAGNGFVVTESDIVANTRKGKQVMNVSMPDEAKLVVPVKGDHLAVVG 671

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRK+L+F + Q+PEM+RGKGVRLQ YKDGGISD+ CF I EGLTW DSAGR + +++++
Sbjct: 672 ENRKMLVFPLAQVPEMARGKGVRLQRYKDGGISDIRCFSIAEGLTWEDSAGRVFTKTKDE 731

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           LL W+G R G G +VPKGFPRSGKF
Sbjct: 732 LLEWMGDRAGAGRVVPKGFPRSGKF 756


>gi|227550645|ref|ZP_03980694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257896292|ref|ZP_05675945.1| DNA gyrase subunit A [Enterococcus faecium Com12]
 gi|293379373|ref|ZP_06625517.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1]
 gi|227180224|gb|EEI61196.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257832857|gb|EEV59278.1| DNA gyrase subunit A [Enterococcus faecium Com12]
 gi|292641896|gb|EFF60062.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1]
          Length = 823

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 398/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKEDQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTSNITEKNGPLAG 753



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TSNITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 801 VVTMAAVEPE 810


>gi|153952677|ref|YP_001393442.1| DNA gyrase subunit A [Clostridium kluyveri DSM 555]
 gi|146345558|gb|EDK32094.1| GyrA1 [Clostridium kluyveri DSM 555]
          Length = 806

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 412/760 (54%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+G+     
Sbjct: 2   FDEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++   +L+G++++ VDF   ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    + +I+NPE++I +L+  I GPDFPT GIIV     I  +Y  GRG   
Sbjct: 182 PPHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIV-GTSGIKSAYETGRGKII 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  ++E   G   IV+TEIPYQV KS+LIE +A+L+  KRI  + DIRDES  D   
Sbjct: 241 VRAKTEIQEEK-GKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + ++ +  ++  + M+  F + M  L     P+V+ L  +L  +L  + E+
Sbjct: 300 IVVELKRDANANITLNQLYKHTRMQDTFGVIMLTLVD-NEPKVLNLKQMLVHYLKFQEEI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           L RR+ F +   + R  IL+GL IA   IDE+I +IR+       +  ++ +F+L+E Q 
Sbjct: 359 LTRRTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDKFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  +I++E + L+   + +  +L +     N I  E+ E+++ +  
Sbjct: 419 QAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEILENKSILLNMIKDELIEIRDKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT   E+  ++     + +IE+E + + +++ G+I+          +     +
Sbjct: 479 E-----RRT---EIQISNDDINIEDLIEEEEVVITLTHAGYIKRISADTYSSQRRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNH 598
            A+  KE D ++      T   IL  +  GK Y L    +       +      L+ L+ 
Sbjct: 531 QAMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLLPLDG 590

Query: 599 NQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ I     +   D     ++ + +G     E ++  +  + G   + +   +++  V  
Sbjct: 591 DEQIQAVISFKEIDDDNYFIMATKRGLVKKTEINQYASIRKNGLNAINLRDGDELIGVKM 650

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
            TGD  V +  +N   + FS   +    R   GV+  + +   I+  +     +    + 
Sbjct: 651 TTGDSEVLIFTKNGYAIRFSEKDVRPTGRNTTGVKAITLRKKDIAVAMDIASNKED-ILV 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +        + KRGG G +  K   ++G  + +
Sbjct: 710 VSENGFGKRTPVTEYTIHKRGGKGIITYKSTEKTGLIVGA 749



 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 67/208 (32%), Gaps = 6/208 (2%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +   + K               ++      +        L+A++ ++GD L        
Sbjct: 594 IQAVISFKEIDDDNYFIMATKRGLVKKTEINQYASIRKNGLNAINLRDGDELIGVKMTTG 653

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
              +L+ + +G A      ++     +   +   I L      V   +  +   +LVVS 
Sbjct: 654 DSEVLIFTKNGYAIRFSEKDVRPTGRNTTGV-KAITLRKKDIAVAMDIASNKEDILVVSE 712

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSI 675
            G       +E   + R GK  +   S EK   +     V   D + ++  +   +  ++
Sbjct: 713 NGFGKRTPVTEYTIHKRGGKGIITYKSTEKTGLIVGARVVKDEDEMMLINSSNVAIRLNV 772

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             I   SR   GV L   ++      I 
Sbjct: 773 SDISTTSRNAMGVTLMRTEEEQRVVAIA 800


>gi|298375677|ref|ZP_06985634.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19]
 gi|298268177|gb|EFI09833.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19]
          Length = 870

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/759 (30%), Positives = 397/759 (52%), Gaps = 23/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ +  +A ID   +I +E L++YI  PDFPTG  I      + +++  GRG   +
Sbjct: 184 HNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIY-GYAGVKDAFETGRGRIIL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  + EV      I++TEIPY V K+ LI+ IA+L+  KRI  + ++ DES      +
Sbjct: 243 RGKAEI-EVENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +  +++  ++ L+ +++ F +N   L     P+++ L  ++K ++ HR EV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALV-NGRPRLLNLKDLIKAFVEHRHEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ + ++  + R  IL+GL+IA  NIDE+IAII++     +    ++ RFSL+E Q  
Sbjct: 361 IRRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQAR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E + +      ++ +L +       I  E+ E+K+ F   
Sbjct: 421 AIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKFGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +         A  +  +       +  +     R+     V       ++ D
Sbjct: 481 RKTDIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETRDED 540

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF- 606
            ++    A     +L  +  GK Y L    +  G  + +  AIQ L+++  +  +     
Sbjct: 541 FVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPDDKVQAFIR 600

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  LL  + KG              + G   + +  ++ +  V    G
Sbjct: 601 VKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIQVCMTNG 660

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD---GGISDVICFKICEGLTWID 713
            + V +   N + + F    +  M R   GV+  +  +     +  +IC K  E  T + 
Sbjct: 661 NNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDKEKETVLV 720

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +  +     +  RGG G        ++GK ++
Sbjct: 721 VSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVA 759



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/458 (10%), Positives = 125/458 (27%), Gaps = 31/458 (6%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           K       +R  +LE +   S     ++   K+     + +   I   S  E +    + 
Sbjct: 365 KYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQARAIVE 424

Query: 345 VLSMGRVP----QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +           ++      +++ +A+  E+L           D  +EI           
Sbjct: 425 MRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKFGDERKTD 484

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDA---ILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +   N +          +++         +   R +    +     ++  ++ +  
Sbjct: 485 IVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETRDEDFVEY 544

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK-ATLQQAMIE 516
                                ++  +         GR       +   DK     +    
Sbjct: 545 IYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPDDKVQAFIRVKKL 604

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR--ILLLSTDGKAYT 574
                 + S+     + K          +       +       D   I +  T+G    
Sbjct: 605 TTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIQVCMTNGNNEV 664

Query: 575 LPAGNLLSGRGHGEA------------IQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSK 620
           + A          E+              + +D ++  ++V         K  +LVVS +
Sbjct: 665 IIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDKEKETVLVVSEQ 724

Query: 621 GNAFIVEESEIIANTRKGKTF--LKVSSE-EKMKLVV-KVTGDHVAVVGENRKLLIFSID 676
           G        +     R GK    + ++ +  K+  +      + + ++ ++   +   + 
Sbjct: 725 GYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIINKSGIAIRMKVA 784

Query: 677 QIPEMSRG-KGVRLQSY--KDGGISDVICFKICEGLTW 711
            +  + R  +GVRL +   ++  I+ V           
Sbjct: 785 DLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEEI 822


>gi|24373958|ref|NP_718001.1| DNA gyrase, A subunit [Shewanella oneidensis MR-1]
 gi|24348396|gb|AAN55445.1|AE015681_9 DNA gyrase, A subunit [Shewanella oneidensis MR-1]
          Length = 919

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/812 (30%), Positives = 388/812 (47%), Gaps = 72/812 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI +P +SIE+L++YI GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIADPALSIEQLMDYIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D  
Sbjct: 241 IMRALAEVETEENGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +    + LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPEYGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+   +  +                        
Sbjct: 480 LLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +       A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 540 VTLSHLGYAKYQPLSDYQAQRRGGKGKVATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 599

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  L+ L   + I        Y     +++ +S G       
Sbjct: 600 WLKVYQLPLASRTSRGRPIVNLLPLADGERITAILPVREYAEDKYIIMATSNGTVKKTAL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ---------- 677
           +        G   + +   +++  V    GD  + +     K++ F   +          
Sbjct: 660 TAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGN 719

Query: 678 ---------------IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
                          +  M RG  GVR    ++G     +     +G   +      Y +
Sbjct: 720 PVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQRVVSLIVPKDDGA-ILTVTENGYGK 778

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      R   G +  K   R+G  + +
Sbjct: 779 RTELSEYPSKSRATKGVVSIKVSERNGAVVGA 810


>gi|323497716|ref|ZP_08102731.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326]
 gi|323317192|gb|EGA70188.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326]
          Length = 877

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/792 (32%), Positives = 397/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEVEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ F  +        +         A
Sbjct: 475 DEYKALLDEIAELMHILASTERLMEVIREELETVRDAFGDARRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V    GD  + +  +  K++ F+ D++  M 
Sbjct: 655 KKTSLDQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADEDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|296330043|ref|ZP_06872527.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672705|ref|YP_003864376.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153082|gb|EFG93947.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305410948|gb|ADM36066.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 821

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 420/764 (54%), Gaps = 31/764 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  NT     V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MNEQNTP---QVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E+I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 297 DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKVLNLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +IE+E I V +++ G+I+          K
Sbjct: 476 KERFNDE-----RRTEIV--TAGLETIEDEDLIERENIVVTLTHNGYIKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +       +   I  
Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +++   L   +  G +     S+       G   L +  +++
Sbjct: 589 LLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F    + EM R   GV+  +  D  +   +   + E
Sbjct: 649 LMGVRLTDGTKQMIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGMEI-LEE 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +    + Y +           RGG G    K    +G+ +
Sbjct: 708 ESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLV 751



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 6/176 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL  +E D L        T ++++ + +G     P  ++        A    
Sbjct: 632 NIRNNGLIALSLREDDELMGVRLTDGTKQMIIGTKNGLLIRFPETDVREMGRTA-AGVKG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           I L  +  +V   + +    +L+V+ KG        E    +R GK         +  ++
Sbjct: 691 ITLTDDDVVVGMEILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQL 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
             V    G+  + ++  +  L+   I+ I    R  +GVRL    +      +   
Sbjct: 751 VTVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806


>gi|238797460|ref|ZP_04640959.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969]
 gi|238718731|gb|EEQ10548.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969]
          Length = 892

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/793 (32%), Positives = 392/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I++ EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARGEVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVAAMLERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE ++ +        T         
Sbjct: 475 LDEYKELLTAIAELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|149182284|ref|ZP_01860763.1| DNA gyrase subunit A [Bacillus sp. SG-1]
 gi|148849976|gb|EDL64147.1| DNA gyrase subunit A [Bacillus sp. SG-1]
          Length = 839

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/760 (32%), Positives = 413/760 (54%), Gaps = 28/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                NVK +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3   ETPRSNVKEINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  I++ +++D +D+RD Y+  + EP+V PS+FPNLL NG+SGIAVGMAT+
Sbjct: 123 YTEARMSKISMEIIRDINKDTIDYRDNYDGSEREPIVMPSRFPNLLVNGSSGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP H + E+ +  LAL  +PEI+I++L++YI GPDFPT G+IV  R  I  +Y  G+G  
Sbjct: 183 IPPHQLGEVIDGLLALSHDPEITIQELMDYIPGPDFPTAGMIV-GRSGIRRAYESGKGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +E    G   I+V EIPYQV K++LIEKIA+L+  K+I  + D+RDES  +  
Sbjct: 242 TMRAKVRIETKANGKETIIVDEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  + ++L+ +++  + ++T F +N+  L     P+V+ L   L  +L H++ 
Sbjct: 302 RIVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVD-GQPKVLNLKQCLYYYLEHQKV 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F ++  + R  IL+GL IA  +IDEIIA+IR        +  ++  FSL+E Q
Sbjct: 361 VIRRRTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTDIAREGLMENFSLSEKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I++E   L+    ++ ++L   ++    I  E+ E+KE F+
Sbjct: 421 AQAILDMRLQRLTGLERDKIENEYQELVKLIAELKAILADEEKVLEIIREELNEIKERFN 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT     +   +    + +I +E I + +++ G+I+          K     
Sbjct: 481 DE-----RRTEIV--AGGIEQIEDEDLIPRENIILTLTHNGYIKRLPVSTYRSQKRGGRG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +   E D ++  L   T D IL  +  GKA+      +       +   I  ++ ++
Sbjct: 534 IQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKAFKAKGYEIPEFSRTAKGIPIINMLGVD 593

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +     L   + +G +     S+       G   + +   +++  V 
Sbjct: 594 KGEWVNAMIRIEEFVDDWYLFFTTKQGISKRTPVSDFANIRTNGLIAINLRENDELISVK 653

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   + +  +   L+ F    +  M R   GV+  +     I   +   + E    +
Sbjct: 654 LTDGSKDIIIGTQKGMLIRFPETDVRSMGRTATGVKGINLDSEDIVVGMEI-LEEKDDVL 712

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + +        +  RGG G        R+G+ +S
Sbjct: 713 VVTEKGFGKRTPAEEYRIQTRGGKGLKTCNITDRNGELIS 752



 Score = 84.1 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 79/269 (29%), Gaps = 21/269 (7%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
               +  +         + +  +    S   +   I   +           +        
Sbjct: 551 TSTHDTILFFTNKGKAFKAKGYEIPEFSRTAKGIPIINMLGV------DKGEWVNAMIRI 604

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            E                +   V              +  L A++ +E D L        
Sbjct: 605 EEFVDDWYLFFTTKQGISKRTPVSDFAN-------IRTNGLIAINLRENDELISVKLTDG 657

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           +  I++ +  G     P  ++ S       +   I+L+    +V   + +    +LVV+ 
Sbjct: 658 SKDIIIGTQKGMLIRFPETDVRSMGRTATGV-KGINLDSEDIVVGMEILEEKDDVLVVTE 716

Query: 620 KGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           KG        E    TR GK      +   +  ++  V  VTG+  + ++  +  L+   
Sbjct: 717 KGFGKRTPAEEYRIQTRGGKGLKTCNITDRNG-ELISVKAVTGEEDLMLITAHGVLIRMD 775

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++ I    R  +GV+L    +      + 
Sbjct: 776 VNDISITGRNTQGVKLIRLDENSSVATVA 804


>gi|257885592|ref|ZP_05665245.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501]
 gi|257821448|gb|EEV48578.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501]
          Length = 823

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/759 (31%), Positives = 397/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    +      + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKGNQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 81.0 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKGNQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|150007732|ref|YP_001302475.1| DNA gyrase subunit A [Parabacteroides distasonis ATCC 8503]
 gi|255013563|ref|ZP_05285689.1| DNA gyrase A subunit [Bacteroides sp. 2_1_7]
 gi|256839992|ref|ZP_05545501.1| DNA gyrase, A subunit [Parabacteroides sp. D13]
 gi|262381760|ref|ZP_06074898.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B]
 gi|149936156|gb|ABR42853.1| DNA gyrase A subunit [Parabacteroides distasonis ATCC 8503]
 gi|256738922|gb|EEU52247.1| DNA gyrase, A subunit [Parabacteroides sp. D13]
 gi|262296937|gb|EEY84867.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B]
          Length = 870

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/759 (30%), Positives = 397/759 (52%), Gaps = 23/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ +  +A ID   +I +E L++YI  PDFPTG  I      + +++  GRG   +
Sbjct: 184 HNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIY-GYAGVKDAFETGRGRIIL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  + EV      I++TEIPY V K+ LI+ IA+L+  KRI  + ++ DES      +
Sbjct: 243 RGKAEI-EVENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +  +++  ++ L+ +++ F +N   L     P+++ L  ++K ++ HR EV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALV-NGRPRLLNLKDLIKAFVEHRHEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ + ++  + R  IL+GL+IA  NIDE+IAII++     +    ++ RFSL+E Q  
Sbjct: 361 IRRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQAR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E + +      ++ +L +       I  E+ E+K+ F   
Sbjct: 421 AIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKFGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +         A  +  +       +  +     R+     V       ++ D
Sbjct: 481 RKTDIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETRDED 540

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF- 606
            ++    A     +L  +  GK Y L    +  G  + +  AIQ L+++  +  +     
Sbjct: 541 FVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPDDKVQAFIR 600

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  LL  + KG              + G   + +  ++ +  V    G
Sbjct: 601 VKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIQVCMTNG 660

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD---GGISDVICFKICEGLTWID 713
            + V +   N + + F    +  M R   GV+  +  +     +  +IC K  E  T + 
Sbjct: 661 NNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDKEKETVLV 720

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +  +     +  RGG G        ++GK ++
Sbjct: 721 VSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVA 759



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/458 (10%), Positives = 125/458 (27%), Gaps = 31/458 (6%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           K       +R  +LE +   S     ++   K+     + +   I   S  E +    + 
Sbjct: 365 KYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQARAIVE 424

Query: 345 VLSMGRVP----QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +           ++      +++ +A+  E+L           D  +EI           
Sbjct: 425 MRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKFGDERKTD 484

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDA---ILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +   N +          +++         +   R +    +     ++  ++ +  
Sbjct: 485 IVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETRDEDFVEY 544

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK-ATLQQAMIE 516
                                ++  +         GR       +   DK     +    
Sbjct: 545 IYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPDDKVQAFIRVKKL 604

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR--ILLLSTDGKAYT 574
                 + S+     + K          +       +       D   I +  T+G    
Sbjct: 605 TTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIQVCMTNGNNEV 664

Query: 575 LPAGNLLSGRGHGEA------------IQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSK 620
           + A          E+              + +D ++  ++V         K  +LVVS +
Sbjct: 665 IIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDKEKETVLVVSEQ 724

Query: 621 GNAFIVEESEIIANTRKGKTF--LKVSSE-EKMKLVV-KVTGDHVAVVGENRKLLIFSID 676
           G        +     R GK    + ++ +  K+  +      + + ++ ++   +   + 
Sbjct: 725 GYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIINKSGIAIRMKVA 784

Query: 677 QIPEMSRG-KGVRLQSY--KDGGISDVICFKICEGLTW 711
            +  + R  +GVRL +   ++  I+ V           
Sbjct: 785 DLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEEI 822


>gi|329925102|ref|ZP_08280046.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
 gi|328940221|gb|EGG36553.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
          Length = 834

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/770 (33%), Positives = 416/770 (54%), Gaps = 38/770 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +N S         +K   +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MAEENFS--------QIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYA 52

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+G+      KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 53  MSELGMAPDKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGS 112

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR++++A  +L+ ++++ +DF   Y+ E+ EPVV P+++PNLL NG 
Sbjct: 113 IDGDMAAAMRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGV 172

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +   A+I NP+I+  +L+EYI GPDFPT G I+  RE I 
Sbjct: 173 SGIAVGMATNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYIL-GREGIR 231

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA+  +EE    +  IVV EIPYQV K+RL+EKIAEL+  KRI  + D
Sbjct: 232 QAYRTGRGSVTMRAKATIEENNNKA-RIVVHEIPYQVNKARLVEKIAELVREKRIDGITD 290

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   ++    R ++P++++ +++  + M++ F +NM  +     P+++ L  +
Sbjct: 291 LRDESDRNGMRIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIV-NNEPKILNLRDV 349

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L  +L H+  V+ RR+ F ++  + R  IL+GL +A  ++DE+IA+IR        +  +
Sbjct: 350 LFHYLEHQVTVIRRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGL 409

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF L+  Q  AIL++RL+ L  LE  +I++E   LLA   ++  +L +       I  
Sbjct: 410 MERFGLSHEQAQAILDMRLQRLTGLEREKIENEYQELLARIAELREILANEHLVLQIIND 469

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++E+KE F+       RRT   E++  + + L + +I +E + + I++ G+I+      
Sbjct: 470 ELQEIKERFADE-----RRT---EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANT 521

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
               K     +  +  K  D ++     ++   ++  +  GKAY L A  +        G
Sbjct: 522 YRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARG 581

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  LI +   + I        +DS   L   + +G        + +   + G   + +
Sbjct: 582 TPIINLIQIEQGESINAVIPVENFDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINL 641

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++ +  V    G   + +       + F    +  M R   GV+  +  D     +  
Sbjct: 642 REDDSLIEVKLTDGQQEIIMGTAQGMSIRFKESDVRSMGRSATGVKGITLDDNDEV-IGM 700

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + + L  +    + Y +           RGG G        ++G  ++
Sbjct: 701 DVVDQELDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVA 750



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 86/216 (39%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E   +  A +     + +      + +G ++              L A++ +E DSL
Sbjct: 588 IQIEQGESINAVIPVENFDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++ +  G +      ++ S       +   I L+ N +++   V D  
Sbjct: 648 IEVKLTDGQQEIIMGTAQGMSIRFKESDVRSMGRSATGV-KGITLDDNDEVIGMDVVDQE 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKV--TGDHVAVVGEN 667
             +L+V++KG       S+  + TR GK    + ++ +    + +KV  + + + ++  +
Sbjct: 707 LDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITAS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++  S++ I  M R  +GV+L + ++      +C
Sbjct: 767 GTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVC 802



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 110/386 (28%), Gaps = 7/386 (1%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRI---VLFPKNRSLDPDLLMESIFMLSDME 336
              ++++  L   K     +++    AE   I            D    ++  F      
Sbjct: 425 DMRLQRLTGLEREKIENEYQELLARIAELREILANEHLVLQIINDELQEIKERFADERRT 484

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
                  ++L    +P+   +  I       R      RS  R       ++      + 
Sbjct: 485 EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGGRGVVGMDTKSEDFVE 544

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           +L +      +            +               + +L ++E+ +  + +  +  
Sbjct: 545 HLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQIEQGESINAVIPVEN 604

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
                     + +    +   E               R   +  EV   D    Q+ ++ 
Sbjct: 605 FDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSLIEVKLTDGQ--QEIIMG 662

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      +RS+   +  +  +   + D +           IL+++T G     P
Sbjct: 663 TAQGMSIRFKESDVRSMGRSATGVKGITLDDNDEVIGMDVVDQELDILIVTTKGYGKRTP 722

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A +  S    G+ I+ +     N  +V   V  S   L+++++ G         I    R
Sbjct: 723 ASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITASGTIIRTSMEGISTMGR 782

Query: 637 --KGKTFLKVSSEEKMKLVVKVTGDH 660
             +G   + +  ++ +  V +     
Sbjct: 783 YAQGVKLINIREDDAVGTVCRADKSD 808


>gi|261403884|ref|YP_003240125.1| DNA gyrase subunit A [Paenibacillus sp. Y412MC10]
 gi|261280347|gb|ACX62318.1| DNA gyrase, A subunit [Paenibacillus sp. Y412MC10]
          Length = 834

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/770 (33%), Positives = 416/770 (54%), Gaps = 38/770 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +N S         +K   +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MAEENFS--------QIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYA 52

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+G+      KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 53  MSELGMAPDKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGS 112

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR++++A  +L+ ++++ +DF   Y+ E+ EPVV P+++PNLL NG 
Sbjct: 113 IDGDMAAAMRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGV 172

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +   A+I NP+I+  +L+EYI GPDFPT G I+  RE I 
Sbjct: 173 SGIAVGMATNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYIL-GREGIR 231

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA+  +EE    +  IVV EIPYQV K+RL+EKIAEL+  KRI  + D
Sbjct: 232 QAYRTGRGSVTMRAKATIEENNNKA-RIVVHEIPYQVNKARLVEKIAELVREKRIDGITD 290

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   ++    R ++P++++ +++  + M++ F +NM  +     P+++ L  +
Sbjct: 291 LRDESDRNGMRIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIV-NNEPKILNLRDV 349

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L  +L H+  V+ RR+ F ++  + R  IL+GL +A  ++DE+IA+IR        +  +
Sbjct: 350 LFHYLEHQVTVIRRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGL 409

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF L+  Q  AIL++RL+ L  LE  +I++E   LLA   ++  +L +       I  
Sbjct: 410 MERFGLSHEQAQAILDMRLQRLTGLEREKIENEYQELLARIAELREILANEHLVLQIIND 469

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++E+KE F+       RRT   E++  + + L + +I +E + + I++ G+I+      
Sbjct: 470 ELQEIKERFADE-----RRT---EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANT 521

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
               K     +  +  K  D ++     ++   ++  +  GKAY L A  +        G
Sbjct: 522 YRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARG 581

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  LI +   + I        +DS   L   + +G        + +   + G   + +
Sbjct: 582 TPIINLIQIEQGESINAVIPVENFDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINL 641

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++ +  V    G   + +       + F    +  M R   GV+  +  D     +  
Sbjct: 642 REDDSLIEVKLTDGQQEIIMGTAQGMSIRFKESDVRSMGRSATGVKGITLDDNDEV-IGM 700

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + + L  +    + Y +           RGG G        ++G  ++
Sbjct: 701 DVVDQELDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVA 750



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 86/216 (39%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E   +  A +     + +      + +G ++              L A++ +E DSL
Sbjct: 588 IQIEQGESINAVIPVENFDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++ +  G +      ++ S       +   I L+ N +++   V D  
Sbjct: 648 IEVKLTDGQQEIIMGTAQGMSIRFKESDVRSMGRSATGV-KGITLDDNDEVIGMDVVDQE 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKV--TGDHVAVVGEN 667
             +L+V++KG       S+  + TR GK    + ++ +    + +KV  + + + ++  +
Sbjct: 707 LDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITAS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++  S++ I  M R  +GV+L + ++      +C
Sbjct: 767 GTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVC 802



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 110/386 (28%), Gaps = 7/386 (1%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRI---VLFPKNRSLDPDLLMESIFMLSDME 336
              ++++  L   K     +++    AE   I            D    ++  F      
Sbjct: 425 DMRLQRLTGLEREKIENEYQELLARIAELREILANEHLVLQIINDELQEIKERFADERRT 484

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
                  ++L    +P+   +  I       R      RS  R       ++      + 
Sbjct: 485 EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGGRGVVGMDTKSEDFVE 544

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           +L +      +            +               + +L ++E+ +  + +  +  
Sbjct: 545 HLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQIEQGESINAVIPVEN 604

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
                     + +    +   E               R   +  EV   D    Q+ ++ 
Sbjct: 605 FDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSLIEVKLTDGQ--QEIIMG 662

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      +RS+   +  +  +   + D +           IL+++T G     P
Sbjct: 663 TAQGMSIRFKESDVRSMGRSATGVKGITLDDNDEVIGMDVVDQELDILIVTTKGYGKRTP 722

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A +  S    G+ I+ +     N  +V   V  S   L+++++ G         I    R
Sbjct: 723 ASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITASGTIIRTSMEGISTMGR 782

Query: 637 --KGKTFLKVSSEEKMKLVVKVTGDH 660
             +G   + +  ++ +  V +     
Sbjct: 783 YAQGVKLINIREDDAVGTVCRADKSD 808


>gi|315644306|ref|ZP_07897476.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
 gi|315280681|gb|EFU43970.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
          Length = 832

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/770 (33%), Positives = 417/770 (54%), Gaps = 38/770 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +N S         +K   +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MAEENFS--------QIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYA 52

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+G+      KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 53  MSELGMAPDKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGS 112

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR++++A  +L+ ++++ +DF   Y+ E+ EPVV P+++PNLL NG 
Sbjct: 113 IDGDMAAAMRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEHEPVVLPARYPNLLVNGV 172

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +   A+I NP+I+  +L+EYI GPDFPT G I+  RE I 
Sbjct: 173 SGIAVGMATNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGFIL-GREGIR 231

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA+  +EE    +  IVV EIPYQV K+RL+EKIAEL+  KRI  + D
Sbjct: 232 QAYRTGRGSVTMRAKATIEENNNKA-RIVVHEIPYQVNKARLVEKIAELVRDKRIDGITD 290

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   ++    R ++P++++ +++  + M++ F +NM  +     P+++ L  +
Sbjct: 291 LRDESDRNGMRIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIV-NNEPKILNLRDV 349

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L  +L H+  V+ RR+ F ++  + R  IL+GL IA  ++DE+IA+IR        +  +
Sbjct: 350 LFYYLEHQVIVIRRRTEFELRKAEARAHILEGLRIALDHLDEVIALIRASQTTEAAREGL 409

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF L++ Q  AIL++RL+ L  LE  +I++E   LLA+  ++  +L +       I  
Sbjct: 410 IERFGLSQEQAQAILDMRLQRLTGLEREKIENEYQELLAKIAELREILANEHLVLQIIND 469

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++E+KE FS       RRT   E++  + + L + +I +E + + I++ G+I+      
Sbjct: 470 ELQEIKERFSDE-----RRT---EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANT 521

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
               K     +  +  K  D ++     ++   ++  +  GKAY L A  +        G
Sbjct: 522 YRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARG 581

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  LI +   + I        +DS   L   + +G        + +   + G   + +
Sbjct: 582 TPIINLIQIEQGESINAVIPVENFDSDNFLFFATRQGVVKKTPLEDYVNIRKGGLIAINL 641

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++ +  V    G   + +       + F    +  M R   GV+  +  D      + 
Sbjct: 642 REDDSLIEVKLTDGQQEIIIGTAQGMSIRFKESDVRSMGRSATGVKGITLDDDDEVIGMD 701

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               E L  +    + Y +           RGG G        ++G  ++
Sbjct: 702 VVDRE-LDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVA 750



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 86/216 (39%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E   +  A +     + +      + +G ++              L A++ +E DSL
Sbjct: 588 IQIEQGESINAVIPVENFDSDNFLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++ +  G +      ++ S       +   I L+ + +++   V D  
Sbjct: 648 IEVKLTDGQQEIIIGTAQGMSIRFKESDVRSMGRSATGV-KGITLDDDDEVIGMDVVDRE 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKV--TGDHVAVVGEN 667
             +L+V++KG       S+  + TR GK    + ++ +    + +KV  + + + ++  +
Sbjct: 707 LDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITSS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++  S++ I  M R  +GV+L + ++      +C
Sbjct: 767 GTIIRTSMEGISTMGRYAQGVKLINIREDDSVGTVC 802



 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 47/383 (12%), Positives = 111/383 (28%), Gaps = 7/383 (1%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRI---VLFPKNRSLDPDLLMESIFMLSDME 336
              ++++  L   K     +++  + AE   I            D    ++  F      
Sbjct: 425 DMRLQRLTGLEREKIENEYQELLAKIAELREILANEHLVLQIINDELQEIKERFSDERRT 484

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
                  ++L    +P+   +  I       R      RS  R       ++      + 
Sbjct: 485 EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGGRGVVGMDTKSEDFVE 544

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           +L +      +            +               + +L ++E+ +  + +  +  
Sbjct: 545 HLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQIEQGESINAVIPVEN 604

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
                     + +    +   E               R   +  EV   D    Q+ +I 
Sbjct: 605 FDSDNFLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSLIEVKLTDGQ--QEIIIG 662

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      +RS+   +  +  +   + D +           IL+++T G     P
Sbjct: 663 TAQGMSIRFKESDVRSMGRSATGVKGITLDDDDEVIGMDVVDRELDILIVTTKGYGKRTP 722

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A +  S    G+ I+ +     N  +V   V  S   L++++S G         I    R
Sbjct: 723 ASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITSSGTIIRTSMEGISTMGR 782

Query: 637 --KGKTFLKVSSEEKMKLVVKVT 657
             +G   + +  ++ +  V +  
Sbjct: 783 YAQGVKLINIREDDSVGTVCRAD 805


>gi|312134089|ref|YP_004001427.1| DNA gyrase subunit A [Caldicellulosiruptor owensensis OL]
 gi|311774140|gb|ADQ03627.1| DNA gyrase, A subunit [Caldicellulosiruptor owensensis OL]
          Length = 809

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/751 (32%), Positives = 406/751 (54%), Gaps = 23/751 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + ++DN   +++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DIRDES ++   ++  
Sbjct: 246 TSIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L     P+V+ L  +L  ++ H++E++ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVD-NQPKVLTLMDMLNLYIEHQKEIIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+             RF  T+ Q  AIL
Sbjct: 365 TRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKDRLIQRFQFTDIQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASEAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIE------KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             RRT   +    D    +    +           +        +S K     ++ +  +
Sbjct: 482 --RRTKIIQDEHEDFEEEELIQEQETVITLTHFGYIKRLPLDTYKSQKRGGRGITGISTR 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D ++      T   IL  +  G+ + L A  +  G    +  AI  LI +  ++ I  
Sbjct: 540 EDDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKITA 599

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
                      L++ +  G    V  SE    TR GK  + ++ ++ +  V   +G D V
Sbjct: 600 TMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTRAGKKAITLADDDSLVDVKLTSGSDEV 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V  N   ++F+ + +  M R  +GV+  + +DG    V   K  +G   +      + 
Sbjct: 660 VLVSSNGYCVVFNENDVRVMGRSAQGVKGMTLEDGDFI-VGMEKASDGKYLLCVTENGFG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +          KRG  G L  +   ++GK +
Sbjct: 719 KRSEIEEYRKTKRGAKGVLTYRVTDKTGKIV 749



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              A+   + DSL        +D ++L+S++G        ++       + +   + L  
Sbjct: 635 GKKAITLADDDSLVDVKLTSGSDEVVLVSSNGYCVVFNENDVRVMGRSAQGV-KGMTLED 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVK 655
              IV          LL V+  G     E  E     R  K  L     +K   +  +  
Sbjct: 694 GDFIVGMEKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYRVTDKTGKIVDIKM 753

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           V   D + +       +   + Q+P   R  +GV+L    DG    V    
Sbjct: 754 VNDEDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRI-DGEDIKVSSIA 803


>gi|311104909|ref|YP_003977762.1| DNA gyrase subunit A [Achromobacter xylosoxidans A8]
 gi|310759598|gb|ADP15047.1| DNA gyrase, A subunit [Achromobacter xylosoxidans A8]
          Length = 889

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/791 (31%), Positives = 387/791 (48%), Gaps = 58/791 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NP  S+++L+E I  PDFPTGG I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPGCSVDELMELIPAPDFPTGG-IIYGMSGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++       IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L     P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVD-GQPRLLNLKQMIDYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F+++    R  +L+GL +A  NID+ IAII+    P                        
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVREMLSRA 427

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC---EVSRADKATL 510
           +++    +  +L   ++    I+ E++ +K  FS      RR        E+   D  T 
Sbjct: 488 IMSTIADLLDILARPERITTIISDELQAIKAEFSTGVKDTRRSDIELNATELDTEDLITP 547

Query: 511 QQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
              ++       + S         K       A   KE D +     A+T D +L  S  
Sbjct: 548 TDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLCFSNR 607

Query: 570 GKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    +        G+ I  +  L   + I        +     + + +S+G   
Sbjct: 608 GRVYWLKVWEVPQGTRNSRGKPIVNMFPLTEGEKITVVLPVKEFSEDHYVFMATSRGTVK 667

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               S+     + G   + +   + +       G H V +  +  K + F  + +  M R
Sbjct: 668 KTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGR 727

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR    +D      +     E  + + +    Y +           RG  G +  +
Sbjct: 728 NARGVRGMMLEDTQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 787

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 788 TSSRNGKVVGA 798



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 62/167 (37%), Gaps = 5/167 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   +GD L  A        ++L S  GKA      ++     +   ++ +
Sbjct: 676 NPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRGM 735

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEK 649
           +  +    I      D T  +L  +  G       +E   + R  K  + +     + + 
Sbjct: 736 MLEDTQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGKV 795

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           +  V+ +  D + ++     L+   + +I EM R  +GV L +  DG
Sbjct: 796 VGAVLVMPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLINVDDG 842



 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
              T  +L  + +G     P           + +  +   + N  +V A +   + ++++
Sbjct: 750 GDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGKVVGAVLVMPSDEIML 809

Query: 617 VSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +++ G       SEI    R   G T + V     +  V +V
Sbjct: 810 ITTGGVLVRTRVSEIREMGRATQGVTLINVDDGSSLSGVRRV 851


>gi|301310232|ref|ZP_07216171.1| DNA gyrase, A subunit [Bacteroides sp. 20_3]
 gi|300831806|gb|EFK62437.1| DNA gyrase, A subunit [Bacteroides sp. 20_3]
          Length = 870

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/759 (30%), Positives = 397/759 (52%), Gaps = 23/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ +  +A ID   +I +E L++YI  PDFPTG  I      + +++  GRG   +
Sbjct: 184 HNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIY-GYAGVKDAFETGRGRIIL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  + EV      I++TEIPY V K+ LI+ IA+L+  KRI  + ++ DES      +
Sbjct: 243 RGKAEI-EVENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +  +++  ++ L+ +++ F +N   L     P+++ L  ++K ++ HR EV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALV-NGRPRLLNLKDLIKAFVEHRHEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ + ++  + R  IL+GL+IA  NIDE+IAII++     +    ++ RFSL+E Q  
Sbjct: 361 IRRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQAR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E + +      ++ +L +       I  E+ E+K+ F   
Sbjct: 421 AIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKFGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +         A  +  +       +  +     R+     V       ++ D
Sbjct: 481 RKTDIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETRDED 540

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF- 606
            ++    A     +L  +  GK Y L    +  G  + +  AIQ L+++  +  +     
Sbjct: 541 FVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPDDKVQAFIR 600

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  LL  + KG              + G   + +  ++ +  V    G
Sbjct: 601 VKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIQVCMTNG 660

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD---GGISDVICFKICEGLTWID 713
            + V +   N + + F    +  M R   GV+  +  +     +  +IC K  E  T + 
Sbjct: 661 NNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDKEKETVLV 720

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +  +     +  RGG G        ++GK ++
Sbjct: 721 VSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVA 759



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/458 (10%), Positives = 125/458 (27%), Gaps = 31/458 (6%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           K       +R  +LE +   S     ++   K+     + +   I   S  E +    + 
Sbjct: 365 KYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQARAIVE 424

Query: 345 VLSMGRVP----QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +           ++      +++ +A+  E+L           D  +EI           
Sbjct: 425 MRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKFGDERKTD 484

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDA---ILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +   N +          +++         +   R +    +     ++  ++ +  
Sbjct: 485 IVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETRDEDFVEY 544

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK-ATLQQAMIE 516
                                ++  +         GR       +   DK     +    
Sbjct: 545 IYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPDDKVQAFIRVKKL 604

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR--ILLLSTDGKAYT 574
                 + S+     + K          +       +       D   I +  T+G    
Sbjct: 605 TTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIQVCMTNGNNEV 664

Query: 575 LPAGNLLSGRGHGEA------------IQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSK 620
           + A          E+              + +D ++  ++V         K  +LVVS +
Sbjct: 665 IIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDKEKETVLVVSEQ 724

Query: 621 GNAFIVEESEIIANTRKGKTF--LKVSSE-EKMKLVV-KVTGDHVAVVGENRKLLIFSID 676
           G        +     R GK    + ++ +  K+  +      + + ++ ++   +   + 
Sbjct: 725 GYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIINKSGIAIRMKVA 784

Query: 677 QIPEMSRG-KGVRLQSY--KDGGISDVICFKICEGLTW 711
            +  + R  +GVRL +   ++  I+ V           
Sbjct: 785 DLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEEI 822


>gi|315179992|gb|ADT86906.1| DNA gyrase, subunit A [Vibrio furnissii NCTC 11218]
          Length = 877

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/792 (32%), Positives = 401/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLTEVIDGCLAFIDNESITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NID+II +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 ALGNVAAMLERAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E++ V++ +  +        +         A
Sbjct: 475 DEYKQLLEEIAELMHILASTERLMEVIREELQAVRDGYGDARRTEITAASHDIDLEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEDNERITAILPVTEFSDDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V    GD  + +  ++ K++ F+ DQ+  M 
Sbjct: 655 KKTSLDQFSNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     +G     +     +G   +      Y +           R   G +  
Sbjct: 715 RTASGVRGMKLMEGDQVVSLIVPKTDGD-ILTVTENGYGKRTVLAEYPAKSRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G+ + +
Sbjct: 774 KVSERNGRVVGA 785


>gi|314940126|ref|ZP_07847306.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04]
 gi|314943043|ref|ZP_07849847.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C]
 gi|314953425|ref|ZP_07856343.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A]
 gi|314993836|ref|ZP_07859172.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B]
 gi|314998139|ref|ZP_07863021.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01]
 gi|313587851|gb|EFR66696.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01]
 gi|313591727|gb|EFR70572.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B]
 gi|313594528|gb|EFR73373.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A]
 gi|313598243|gb|EFR77088.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C]
 gi|313640631|gb|EFS05211.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04]
          Length = 823

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 398/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|257890534|ref|ZP_05670187.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410]
 gi|257826894|gb|EEV53520.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410]
          Length = 823

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 397/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDCAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|314948161|ref|ZP_07851557.1| DNA gyrase, A subunit [Enterococcus faecium TX0082]
 gi|313645415|gb|EFS09995.1| DNA gyrase, A subunit [Enterococcus faecium TX0082]
          Length = 823

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 397/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|257094472|ref|YP_003168113.1| DNA gyrase subunit A [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257046996|gb|ACV36184.1| DNA gyrase, A subunit [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 872

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/781 (30%), Positives = 378/781 (48%), Gaps = 48/781 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PVSLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNKPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMAR 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + EP+V P++ PNLL NG++GIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEEEPLVMPARIPNLLINGSAGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I +A LAL++N E++I++L++ + GPDFPT G I+     + E YR GRG   +R R   
Sbjct: 190 IIDACLALLNNAEVTIDELIDLVPGPDFPTAG-IIYGVAGVREGYRTGRGRVVMRGRTHF 248

Query: 259 EEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           E++ +G+    I++ E+PYQV K  L+EKI EL+  KRI  + D+RDES +    V+   
Sbjct: 249 EDMDKGNNRQAIIIDELPYQVNKRTLLEKIGELVNEKRIEGISDLRDESDKSGMRVVIEL 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++  ++  + ++  F +NM  L     P+++ L  +L+ +L HRREVL RR+
Sbjct: 309 KRGEVAEVVLNCLYKQTQLQDTFGMNMVALVD-GQPRLLNLKQMLECFLRHRREVLTRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-------------- 422
            F ++    R  I +GL +A  N+DEIIA+I+    P        S              
Sbjct: 368 VFELRKARERAHIQEGLAVALDNVDEIIALIKASPTPADARRGLMSRLWTSPTVAEMLQR 427

Query: 423 -----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  L+E Q  AIL LRL+ L  LE  +I ++   LLA   
Sbjct: 428 AALDATRPQGLGLEYGLSASGYLLSEAQAQAILELRLQRLTGLERDKIVADYGELLARIA 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +L   ++    I  E+  ++  F          +T           +   +     
Sbjct: 488 DLMDILARPERITEMIVEELTAIRAQFGDKRRSEIVISTQDLGIEDFITPVDMVVTLSHT 547

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             +        R+ +       A   K  D +     A+T D IL  +  G+ Y L    
Sbjct: 548 GYIKSQPLADYRAQRRGGRGKQAAAMKTDDFVDHLFVANTHDFILCFTNRGRVYWLKVYE 607

Query: 580 LLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +        G+ I  L      + I        +     + + +++G       S+    
Sbjct: 608 VPQGTRTSRGKPIVNLFPFEEGEKISAILPVKEFTDDRYIFMCTAQGTVKKTPLSDFSNP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
            + G   + +  E+ +       G   V +V +  K + F  + +  M R  +GVR    
Sbjct: 668 RKAGIIAVALDDEDVLIGAEITNGTQDVVLVSDAGKAVWFDEEDVRPMGRTARGVRGMRL 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            D      +     +  T + +    + +           RG  G +   G  R+G+ ++
Sbjct: 728 ADQQQVLSLLVADNDQQTVLVATENGFGKRTVLADFRHSGRGTQGVIAIAGSERNGRVVA 787

Query: 753 S 753
           +
Sbjct: 788 A 788



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 7/169 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   + D L  A   + T  ++L+S  GKA      ++         ++ +
Sbjct: 666 NPRKAGIIAVALDDEDVLIGAEITNGTQDVVLVSDAGKAVWFDEEDVRPMGRTARGVRGM 725

Query: 594 IDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEK 649
             L   Q +++  V D+  + +LV +  G       ++   + R   G   +  S    +
Sbjct: 726 R-LADQQQVLSLLVADNDQQTVLVATENGFGKRTVLADFRHSGRGTQGVIAIAGSERNGR 784

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
           +     V   D + ++     L+   + +I E+ R  +GV L +   G 
Sbjct: 785 VVAARLVRDEDEIMLITTGGVLIRTRVREIRELGRATQGVTLIALDAGE 833


>gi|219853350|ref|YP_002470472.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
 gi|219567074|dbj|BAH05058.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
          Length = 807

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/752 (31%), Positives = 397/752 (52%), Gaps = 14/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+G+     
Sbjct: 3   FDEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKG 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 63  YRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++   +L+G++++ VDF   ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+I
Sbjct: 123 TEAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    + +I+NPE++I +L+  I GPDFPT GIIV     I  +Y  GRG   
Sbjct: 183 PPHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIV-GTSGIKSAYETGRGKII 241

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  ++E   G   IV+TEIPYQV KS+LIE +A+L+  KRI  + DIRDES  D   
Sbjct: 242 VRAKTEIQEEK-GKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + ++ +  ++  + M+  F + M  L     P+V+ L  +L  +L  + E+
Sbjct: 301 IVVELKRDANANITLNQLYKHTRMQDTFGVIMLTLVD-NEPKVLNLKQMLVHYLKFQEEI 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           L RR+ F +   + R  IL+GL IA   IDE+I +IR+       +  ++ +F+L+E Q 
Sbjct: 360 LTRRTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDKFNLSEKQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  +I++E + L+   + +  +L +     N I  E+ E+++ +  
Sbjct: 420 QAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEILENKSILLNMIKDELIEIRDKYGD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 + +             +  +       +   +     S +     + A+  KE 
Sbjct: 480 ERRTEIQISNDDINIEDLIEEEEVVITLTHAGYIKRISADTYSSQRRGGKGIQAMTTKED 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAF 606
           D ++      T   IL  +  GK Y L    +       +      L+ L+ ++ I    
Sbjct: 540 DFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLLPLDGDEQIQAVI 599

Query: 607 VY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
            +   D     ++ + +G     E ++  +  + G   + +   +++  V   TGD  V 
Sbjct: 600 SFKEIDDDNYFIMATKRGLVKKTEINQYASIRKNGLNAINLRDGDELIGVKMTTGDSEVL 659

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +  +N   + FS   +    R   GV+  + +   I+  +     +    +  +   + +
Sbjct: 660 IFTKNGYAIRFSEKDVRPTGRNTTGVKAITLRKKDIAVAMDIASNKED-ILVVSENGFGK 718

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   + KRGG G +  K   ++G  + +
Sbjct: 719 RTPVTEYTIHKRGGKGIITYKSTEKTGLIVGA 750



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 67/208 (32%), Gaps = 6/208 (2%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +   + K               ++      +        L+A++ ++GD L        
Sbjct: 595 IQAVISFKEIDDDNYFIMATKRGLVKKTEINQYASIRKNGLNAINLRDGDELIGVKMTTG 654

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
              +L+ + +G A      ++     +   +   I L      V   +  +   +LVVS 
Sbjct: 655 DSEVLIFTKNGYAIRFSEKDVRPTGRNTTGV-KAITLRKKDIAVAMDIASNKEDILVVSE 713

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSI 675
            G       +E   + R GK  +   S EK   +     V   D + ++  +   +  ++
Sbjct: 714 NGFGKRTPVTEYTIHKRGGKGIITYKSTEKTGLIVGARVVKDEDEMMLINSSNVAIRLNV 773

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             I   SR   GV L   ++      I 
Sbjct: 774 SDISTTSRNAMGVTLMRTEEEQRVVAIA 801


>gi|257881317|ref|ZP_05660970.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502]
 gi|257893109|ref|ZP_05672762.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408]
 gi|294623764|ref|ZP_06702592.1| DNA gyrase, A subunit [Enterococcus faecium U0317]
 gi|257816975|gb|EEV44303.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502]
 gi|257829488|gb|EEV56095.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408]
 gi|291596718|gb|EFF27941.1| DNA gyrase, A subunit [Enterococcus faecium U0317]
          Length = 823

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD+++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|300312989|ref|YP_003777081.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
 gi|300075774|gb|ADJ65173.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
          Length = 881

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/807 (29%), Positives = 391/807 (48%), Gaps = 70/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               +    +SL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM EM   +  
Sbjct: 2   DQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F K AR+VGEV+GK HPHGD S+YD+LVR+AQ F  RY L+ GQGNFG+IDGD AAA R
Sbjct: 62  PFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ +++  +L  ++++ VDF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTECRLDKISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+   AL L+ N + +I++L+E +  PDFPTGG I+     + + YR GRG  
Sbjct: 182 IPPHNITEVINGALHLLANEQCTIDELIELVPAPDFPTGG-IIYGVSGVRDGYRTGRGRV 240

Query: 251 RVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   EE GR G   I+V E+PYQV K  L+E+IAEL+  K++  + D+RDES +  
Sbjct: 241 VMRAKTHFEEYGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L+HRR
Sbjct: 301 MRVVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVD-GQPRLLNLKQLLECFLSHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------- 412
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAIIR                     
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSRAWDSSM 419

Query: 413 ---------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L++ Q   IL +RL+ L  LE+ 
Sbjct: 420 VREMLARAGEANEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E  +++A+   +  +L    +    I  E+   K  F       RR T        
Sbjct: 480 KIVNEYKDVMAQIADLLDILAKPARVTAIITDELNAAKNDFGIGAKDERRSTIE----HN 535

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I  + + V +S+ G+++S         K       A+  K+ D +     A
Sbjct: 536 ATDLATEDLITPQDMVVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIA 595

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------Y 608
           +T D IL  S  G+ Y L    +        G+ I  +  L   + I            +
Sbjct: 596 NTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGANRSF 655

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
                + + +S G       S+     + G   + +   + +       G H V +  + 
Sbjct: 656 PDDRYVFMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDG 715

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            K + F  + +  M R  +GVR  + ++      +     E  + + +    + +     
Sbjct: 716 GKAVRFDENDVRPMGRTARGVRGMNLEETQQVIALLVAENEQQSVLTATENGFGKRTPIT 775

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  +   R+GK +++
Sbjct: 776 EYTRHGRGTKGMIAIQTSERNGKVVAA 802



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 86/263 (32%), Gaps = 16/263 (6%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G + T 
Sbjct: 594 IANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMF---------PLQDGEKITV 644

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              VS A+++      +        +               + A+   EGD L  A    
Sbjct: 645 ILPVSGANRSFPDDRYVFMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTD 704

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVV 617
               ++L S  GKA      ++         ++ + +L   Q ++   V ++  + +L  
Sbjct: 705 GQHDVMLFSDGGKAVRFDENDVRPMGRTARGVRGM-NLEETQQVIALLVAENEQQSVLTA 763

Query: 618 SSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  G       +E   + R  KG   ++ S    K+     V   D + ++     L+  
Sbjct: 764 TENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDSTDEIMLITTGGVLIRT 823

Query: 674 SIDQIPEMSRG-KGVRLQSYKDG 695
            + +I EM R  +GV L + +DG
Sbjct: 824 RVSEIREMGRATQGVTLIAVEDG 846


>gi|297538378|ref|YP_003674147.1| DNA gyrase subunit A [Methylotenera sp. 301]
 gi|297257725|gb|ADI29570.1| DNA gyrase, A subunit [Methylotenera sp. 301]
          Length = 882

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/780 (30%), Positives = 379/780 (48%), Gaps = 47/780 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDYNKPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNINE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  AL+ +PE+ IE+L+E +  PDFPT G I+     + E YR GRG   +R R  V
Sbjct: 190 VLDACFALLKDPEMGIEELIELVPAPDFPTAG-IIYGTVGVKEGYRTGRGRVVMRGRTHV 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++   G   ++V E+PYQV K   +EKIAEL+  K+I  + D+RDES +    V+    
Sbjct: 249 EDLERGGRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEIAEVVLNNLYKQTQLQDTFGMNMVALLD-GQPRLLNLKQMLEAFLRHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-------------------- 417
           F ++    R  IL+GL +A  N+DE+IAII+    P                        
Sbjct: 368 FELKKARARGHILEGLAVALANVDEMIAIIKAAPTPPEAKVALMAKAWNSPVVEEMLKRA 427

Query: 418 -----------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                             + + L++ Q   IL +RL+ L  LE+ ++ SE   ++     
Sbjct: 428 AMEASRPEGLSIEFGLLPNGYKLSDIQAQEILQMRLQRLTGLEQDKVVSEYKEVMDIIAD 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L +  +    I  E+ E+++ F                           +      
Sbjct: 488 LLDILATPARVTAIINDELTEIRKQFGDKRRSEIVANAQDLSLEDFITPQDVVVTLSHTG 547

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            V        R+ +       A   KE D +     A+T D IL  S+ G+ Y L    +
Sbjct: 548 YVKSQPLDEYRAQRRGGRGKQAAQTKEDDFIDKMFVANTHDYILCFSSRGQVYWLKVYEV 607

Query: 581 LS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
                 G G+ I  L  L   + I        +D    + + +S G       S+     
Sbjct: 608 PQGSRTGRGKPIVNLFPLEEGEKINAILSVKEFDENHFIFMATSLGTVKKTPLSDFANPR 667

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK 693
           + G   + +   + +       G + V +V    K + F+ D +  M R  +GVR     
Sbjct: 668 KSGIIAINLDEGDFLIGAEITNGANDVILVSNGGKAVWFTEDDVRSMGRATRGVRGMKLA 727

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           D      +     +  + + +    Y +           RG  G        R+G  +++
Sbjct: 728 DNQQVLSLLIADNDQQSVLVATENGYGKRTVLADFRHSGRGTQGVKAIAISERNGLVVAA 787



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 60/140 (42%), Gaps = 7/140 (5%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKG 621
           ++L+S  GKA      ++ S       ++ +  L  NQ +++  + D+  + +LV +  G
Sbjct: 694 VILVSNGGKAVWFTEDDVRSMGRATRGVRGM-KLADNQQVLSLLIADNDQQSVLVATENG 752

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQ 677
                  ++   + R   G   + +S    + +  K+    D + ++     L+   + +
Sbjct: 753 YGKRTVLADFRHSGRGTQGVKAIAISERNGLVVAAKLVNEDDEIMLITTGGVLIRTRVKE 812

Query: 678 IPEMSRG-KGVRLQSYKDGG 696
           I E+ R  +GV L +  +G 
Sbjct: 813 IRELGRATQGVTLINLGEGE 832



 Score = 37.4 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 68/220 (30%), Gaps = 12/220 (5%)

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
               +   I S+    +  +  +A  +  VK+         R+              +  
Sbjct: 626 EEGEKINAILSVKEFDENHFIFMATSLGTVKKTPLSDFANPRKSGIIAINLDEGDFLIGA 685

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH---------AHTTDRI 563
            +       +++SN G         V       +    +K+A +          +    +
Sbjct: 686 EITNGANDVILVSNGGKAVWFTEDDVRSMGRATRGVRGMKLADNQQVLSLLIADNDQQSV 745

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           L+ + +G        +        + ++ +     N  +V A + +   +++++++ G  
Sbjct: 746 LVATENGYGKRTVLADFRHSGRGTQGVKAIAISERNGLVVAAKLVNEDDEIMLITTGGVL 805

Query: 624 FIVEESEIIANTRK--GKTFLKVSSEEKMKLV-VKVTGDH 660
                 EI    R   G T + +   EK+  +   V  D 
Sbjct: 806 IRTRVKEIRELGRATQGVTLINLGEGEKLSGLEKIVESDD 845


>gi|114776320|ref|ZP_01451365.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
 gi|114553150|gb|EAU55548.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
          Length = 853

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/747 (31%), Positives = 386/747 (51%), Gaps = 14/747 (1%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            +V +   ++  YL YA+S I  RA+PD RDG KPVHRRI+ AM ++G  F   FKKSAR
Sbjct: 9   VSVLIEDEMKRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMQDLGSTFDKPFKKSAR 68

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD+LVR+AQP+  R+ L+ GQGNFG++DGDS AA RYTEARM+
Sbjct: 69  VVGDVIGKYHPHGDSAVYDALVRMAQPWSMRHVLVDGQGNFGSVDGDSPAAMRYTEARMS 128

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  +L  +D+D VDF   Y+E   EP V P+++PNLL NG+ GIAVGMAT+IP HN+ 
Sbjct: 129 RLAGELLADIDKDTVDFGPNYDESMREPKVLPARYPNLLINGSQGIAVGMATNIPPHNLA 188

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E   A +AL++NPEI  ++L++ + GPDFPTGG  +  R  I  ++  GRG   +RAR  
Sbjct: 189 ETINATIALVNNPEIDDDELMQIMPGPDFPTGG-FIYGRSGIRSAFMTGRGSVTMRARAI 247

Query: 258 VE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           VE         +++TE+PYQV K+ LIE IA  +  K++  + D+RDES  D   +    
Sbjct: 248 VEVNPRTHRQSLIITELPYQVNKANLIENIAHQVRDKKLEGITDLRDESDRDGMRIAIEL 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            ++  P++++ +++  + ++  F  N+  L     P++  +  +L  +L HRR+V+ RR 
Sbjct: 308 KKNEIPEVVLNNLYKHTQLQCNFGCNLLALLD-GQPKLCGVRELLLHFLDHRRQVVTRRC 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILN 433
            F +   + R  IL+GLLIA   IDE+I +IR            +  F L++ Q  AIL+
Sbjct: 367 LFDLAKAEARAHILEGLLIALDRIDEVIKLIRASQTGAEAKAGLMEHFGLSDLQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +IK+E + +      + ++L   K   N I  E+  V++ ++      
Sbjct: 427 MRLQRLTGLERDKIKAEYEEIQRLITHLKAILADEKLLMNVIVEEMEAVRDRYADPRRSE 486

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
               T               +       +  +     R+ +      +A+  K+ D +  
Sbjct: 487 IMDETAELSVEDLITEEDMVVTISNEGYIKRNATSLYRAQRRGGQGKTAMTTKDEDFVAQ 546

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---Y 608
            + A T D +L  S  G+ +      +        G+A+  L+ +  ++ I        +
Sbjct: 547 LMVASTHDYLLFFSDQGRVFRKKVYEVPQAGSTARGKALVNLLPVEKDERISATLAIREF 606

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGEN 667
           D    +++ +  G       SE       G   +K+  ++ +  V+   GD  V +    
Sbjct: 607 DENRFIIMATKNGVVKKTRLSEYQNIRANGIIAIKLDDDDGLISVLVSNGDEDVMLATSG 666

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            K + F+   +  M R  +GV       G  + +    + +  T +  +   + +  +  
Sbjct: 667 GKAIRFAESDVRPMGRSTRGVTGMRLP-GDCNVISMTLVSDEATLLAVSENGFGKRTSVS 725

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + KRGG G    K   R+G  +++
Sbjct: 726 EYNVQKRGGQGVFTLKTGGRNGDMVAA 752



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 76/190 (40%), Gaps = 7/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+            +  + A+   + D L   L ++  + ++L ++ GKA    A + + 
Sbjct: 620 VVKKTRLSEYQNIRANGIIAIKLDDDDGLISVLVSNGDEDVMLATSGGKAIRF-AESDVR 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             G        + L  + ++++  +      LL VS  G       SE     R G+   
Sbjct: 679 PMGRSTRGVTGMRLPGDCNVISMTLVSDEATLLAVSENGFGKRTSVSEYNVQKRGGQGVF 738

Query: 643 KVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            +     + + +  ++    D V ++ ++ +L+   ++ +  + R  +GV+L + K+G  
Sbjct: 739 TLKTGGRNGDMVAALLVHDDDQVMMMTDSGRLVRIRLNGVSVIGRNTQGVKLIACKEGER 798

Query: 698 SDVICFKICE 707
             +   ++ E
Sbjct: 799 V-IGAVRVAE 807


>gi|240850737|ref|YP_002972137.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup]
 gi|240267860|gb|ACS51448.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup]
          Length = 749

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/748 (62%), Positives = 602/748 (80%), Gaps = 2/748 (0%)

Query: 6   ISNSNTLV--EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+   L   +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  
Sbjct: 1   MSDKMNLPFDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRL 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L+ G ++ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LKLNPGQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EPVV P  FPNLLANG+SGI
Sbjct: 121 DNAAAMRYTEARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP HNV E+C+AAL LI +P+++ E+L ++++GPDFPTGGI+VE ++SI ESY
Sbjct: 181 AVGMATSIPPHNVAELCDAALHLIAHPDVNDEELNQFVLGPDFPTGGILVEPKKSIEESY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R+GRG FR+R+RW  E   RGS+ IVVTEIPYQ+QKSRLIEK AEL++A+R+P+LEDI+D
Sbjct: 241 RVGRGFFRLRSRWHQESGSRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDIQD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAED+RIVL PKNR++DP+LLMES+F L+D E RFPLN+NVLS+G++P V+ L   L++
Sbjct: 301 ESAEDIRIVLVPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLSLGKIPNVLSLRESLQQ 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL HR+EVL RRS +R+  ID R+EIL G LIAYLN+DE+I IIR ED+PK  ++SRF L
Sbjct: 361 WLEHRQEVLIRRSHYRLDQIDCRLEILHGYLIAYLNLDEVIQIIREEDEPKKQLISRFEL 420

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TENQ +AILN+RLRSLRKLEE++I+ E ++L AEKEK+ +LL S  +QW  I+ EI++V+
Sbjct: 421 TENQAEAILNMRLRSLRKLEEFEIRKEFESLKAEKEKLQNLLASPIKQWKIISEEIKKVR 480

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
             F   T LG+RRTTF E  R D   +QQAMIEKEPIT+VIS +GW+R+LK H  D  AL
Sbjct: 481 NTFGPETPLGKRRTTFEEAPRHDLDDIQQAMIEKEPITIVISEKGWMRALKGHLNDYKAL 540

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FKEGDSLK+A  A TTD+I+L+ST GK + + A +L  GRGHGE I+LL+D++   D++
Sbjct: 541 SFKEGDSLKLAFPAFTTDKIVLISTGGKFFAIGANSLPGGRGHGEPIRLLVDMDDEHDVL 600

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           TAFV+ +  KLL+VSS GN FIV  +E+IANTRKGK  + V + +K+KL V+V GDHVAV
Sbjct: 601 TAFVHHAEEKLLLVSSHGNGFIVSSAEVIANTRKGKQVMNVKAPDKVKLCVQVNGDHVAV 660

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           VGENRK+LIFSI+QIPEM+RGKGVRLQ YK+GG+ D   F + EGL+W D+A R +NR  
Sbjct: 661 VGENRKMLIFSIEQIPEMNRGKGVRLQRYKEGGVVDAKTFNLSEGLSWQDTAERIFNRQA 720

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +DL  W+G R GVG LVP+GFP+SGKF+
Sbjct: 721 DDLFEWMGMRAGVGRLVPRGFPKSGKFI 748


>gi|15888496|ref|NP_354177.1| DNA topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58]
 gi|15156198|gb|AAK86962.1| topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58]
          Length = 750

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 495/750 (66%), Positives = 612/750 (81%), Gaps = 2/750 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG D +  S    ++N+  V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHA
Sbjct: 1   MGKDLVPPSG--GDDNIHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMG+   +AFKK ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGN
Sbjct: 59  MSEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGN 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAAYRYTEARMT VA L+L+G+ EDAVDFR TYNEED EPVV P  FPNLLANG 
Sbjct: 119 IDGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGA 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIP HN  E+C+AAL LI +P+ ++EKL+E+I GPD PTGG+I+ESRE+I+
Sbjct: 179 SGIAVGMATSIPPHNAHELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENIL 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y+ GRGGFRVRA+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLED
Sbjct: 239 DAYKTGRGGFRVRAKWETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLED 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESAEDVRIVL PKNR++D  LLMES+F LSD+E+R PLNMNVLS+G+VP+VM L+ +
Sbjct: 299 VRDESAEDVRIVLVPKNRTVDATLLMESLFRLSDLESRLPLNMNVLSLGKVPKVMALNEV 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWLAHR++VL RRS  R+ AIDRR+EIL GLLIAYLN+DE+I IIR ED+PK VM++R
Sbjct: 359 LSEWLAHRKDVLVRRSRHRLAAIDRRLEILGGLLIAYLNLDEVIRIIREEDEPKQVMMAR 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           +SLT+NQ +AILN+RLR+LRKLEE++I+ E D+L  EK +I+ LL S  +QW  +A EI 
Sbjct: 419 WSLTDNQAEAILNMRLRNLRKLEEFEIRKEHDDLSKEKSEIEGLLASDDKQWQTVAWEIG 478

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVK+ ++K+T++GRRRT F +   AD   +QQAMIEKEP+T+VIS +GWIR+LK H  D 
Sbjct: 479 EVKKKYAKATEIGRRRTQFADAPDADIEAIQQAMIEKEPVTIVISQKGWIRALKGHMSDT 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           SAL FKEGD  K+A  A TTD++LLL+T GKAYTL A  L  GRGHGE I++++D+ ++Q
Sbjct: 539 SALTFKEGDGPKLAFPAQTTDKLLLLTTGGKAYTLGADKLPGGRGHGEPIRIMVDMENDQ 598

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           DI+TAFV+D + KLL+VS+ GN FIV ESE+IANTRKGK  + VS  ++ KL V VTGDH
Sbjct: 599 DILTAFVHDPSRKLLLVSTGGNGFIVAESEMIANTRKGKQIMNVSMPDEAKLAVPVTGDH 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLL F + Q+PEMSRGKGVRLQ YKDGG+ DV CF + +GL+W D+AGR++ 
Sbjct: 659 VAVVGENRKLLAFPLSQVPEMSRGKGVRLQRYKDGGVVDVKCFALADGLSWSDTAGRAFT 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +   +L  WL  R  VG  VPKGFPRSGKF
Sbjct: 719 KVGEELREWLADRATVGRTVPKGFPRSGKF 748


>gi|294619750|ref|ZP_06699155.1| DNA gyrase, A subunit [Enterococcus faecium E1679]
 gi|291594020|gb|EFF25489.1| DNA gyrase, A subunit [Enterococcus faecium E1679]
          Length = 823

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 397/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKEDQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|238785705|ref|ZP_04629680.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970]
 gi|238713390|gb|EEQ05427.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970]
          Length = 892

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/793 (32%), Positives = 392/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VD+   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDYVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I++ EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARGEVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVSAMLERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE +S +        T         
Sbjct: 475 LDEYKELLTAIAELIFILENPERLMEVIREELVAIKEQYSDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|120598757|ref|YP_963331.1| DNA gyrase subunit A [Shewanella sp. W3-18-1]
 gi|146293166|ref|YP_001183590.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32]
 gi|120558850|gb|ABM24777.1| DNA gyrase subunit A [Shewanella sp. W3-18-1]
 gi|145564856|gb|ABP75791.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32]
 gi|319426322|gb|ADV54396.1| DNA gyrase, A subunit [Shewanella putrefaciens 200]
          Length = 917

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/807 (30%), Positives = 388/807 (48%), Gaps = 67/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI+ P +SIE+L+EYI GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D  
Sbjct: 241 IMRALADIETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +   ++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+   +  +                        
Sbjct: 480 LLEFIAGLLFILRSPERLMEVIKEELEEILTEYGDARRTVINANEIDMSLEDLINEEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +      +A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 540 VTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 599

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  L+ L+  + I              +++ +S G       
Sbjct: 600 WLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYAADKYIIMATSNGTVKKTAL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID----------- 676
           +        G   + +   +++  V    GD  + +     K++ F              
Sbjct: 660 TAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKT 719

Query: 677 ---------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
                     +  M R   GVR    ++G     +     +G   +      Y +     
Sbjct: 720 DPETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVPKGDGA-ILTVTENGYGKRTQLS 778

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 R   G +  K   R+G  + +
Sbjct: 779 EYPAKSRATKGVVSIKVSERNGAVVGA 805


>gi|89101112|ref|ZP_01173948.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
 gi|89084167|gb|EAR63332.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
          Length = 844

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/760 (31%), Positives = 413/760 (54%), Gaps = 28/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 V  +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+    
Sbjct: 3   ETPSSRVTEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD+AAA R
Sbjct: 63  PYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+RM++++  +L+ +++D +D++D Y+ E+ EPVV P++FPNLL NGT+GIAVGMAT+
Sbjct: 123 YTESRMSKISMELLRDINKDTIDYQDNYDGEEREPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP H + EI +  LA+   P+I+I++L+E I GPDFPT G+I+  R  I ++Y  GRG  
Sbjct: 183 IPPHQLGEIIDGVLAISQEPDITIQELMEIIPGPDFPTAGMIL-GRSGIRKAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +E    G   I+V EIPYQV K+RLIEKIAEL+  K++  + D+RDES  +  
Sbjct: 242 TLRAKVDIETKSNGKETIIVHEIPYQVNKARLIEKIAELVRDKKVDGITDLRDESDRNGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  +  +++ +++ L+ ++T F +NM  L     P+V+ L   LK +L H++ 
Sbjct: 302 RIVIEVRKDANASVILNNLYKLTALQTSFGINMLALVD-GQPKVLNLKQCLKYYLDHQQV 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL IA  ++DE+I++IR+       +  ++++F L++ Q
Sbjct: 361 VIRRRTEFELRKAQARAHILEGLRIALDHLDEVISLIRSSQTTEIAREGLMTQFELSDKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E  +L+    +++++L   ++    I  E+ E+KE F+
Sbjct: 421 AQAILDMRLQRLTGLEREKIEDEYQSLVKLIAELEAILADEEKVLEIIREELTEIKERFN 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT     S   +    + +I +E I + +++ G+++          K     
Sbjct: 481 DE-----RRTEIV--SGGIEQIEDEDLIPRENIVITLTHNGYVKRLPVSTYRAQKRGGRG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +   E D ++  +   T + +L  +  GK Y      +       +   I  L+ +N
Sbjct: 534 IQGMGTNEDDFVEHLITTSTHNTLLFFTNKGKVYRAKGYEIPEFSRTAKGIPIINLLGIN 593

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ +      +       L   + +G +     +        G   L +   +++  V 
Sbjct: 594 KDEWVNAVIPVEEFVDEWFLFFTTKEGISKRSPLTSFGNIRNNGLIALNLREGDELISVR 653

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   + +  +N +L+ F    +  M R   GV+  +        V    + E    +
Sbjct: 654 LTDGSKEIIIGTKNGQLIRFPETDVRSMGRTATGVKGITLDSDDEV-VGMEVLEENSEIL 712

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +   ++   +  RGG G        ++G  ++
Sbjct: 713 MVTKKGYGKRTPEMEYRVQGRGGKGIKTGNITDKNGTIVA 752



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 8/142 (5%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G+    P  ++ S       +   I L+ + ++V   V +   ++L+V+ KG     
Sbjct: 665 TKNGQLIRFPETDVRSMGRTATGV-KGITLDSDDEVVGMEVLEENSEILMVTKKGYGKRT 723

Query: 627 EESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
            E E     R GK      +   +   +  V  VTG+  + ++     L+  ++  I  M
Sbjct: 724 PEMEYRVQGRGGKGIKTGNITDKNG-TIVAVKVVTGEEDIMLITTGGVLIRMAVGDISTM 782

Query: 682 SR-GKGVRLQSYKDGGISDVIC 702
            R  +GVRL    D     V  
Sbjct: 783 GRNTQGVRLIRINDSEGEYVAT 804


>gi|152980640|ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
 gi|151280717|gb|ABR89127.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
          Length = 873

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/807 (29%), Positives = 392/807 (48%), Gaps = 70/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               +    +SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM EM   +  
Sbjct: 2   DQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F K AR+VGE +GK HPHGD S+YD+LVR+AQPF  RY L+ GQGNFG+IDGD+AAA R
Sbjct: 62  PFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTECRLDKIAGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ + AL ++ N + ++++L+E I  PDFPTGG I+     + + YR GRG  
Sbjct: 182 IPPHNITEVIDGALHVLRNADATVDELIEIIPAPDFPTGG-IIYGVSGVRDGYRTGRGRV 240

Query: 251 RVRARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   EE        I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +  
Sbjct: 241 VMRAKTHFEEFGKENRAAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R+  P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L+HRR
Sbjct: 301 MRVVIELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVD-GQPKLLNLKQMLECFLSHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------- 412
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAII+                     
Sbjct: 360 EVVTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSV 419

Query: 413 ---------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L+++Q   IL +RL+ L  LE+ 
Sbjct: 420 VREMLARTGEEGVGGVNAFRPENLPKHYGIQADGLYKLSDDQAQEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E   ++ +   +  +L   ++    I  E+   K  +       RR T        
Sbjct: 480 KIVNEYKEVMEQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSTIEL----N 535

Query: 506 DKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I  + + V +S+ G++        R+ K       A+  K+ D +     A
Sbjct: 536 ATDLGTEDLITPQDMVVTLSHTGYMKAQPISEYRAQKRGGRGKQAMATKDDDWIDQLFIA 595

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------Y 608
           +T D IL  S  G+ Y L    +        G+ I  +  L   + I            +
Sbjct: 596 NTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPISGENRTF 655

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
                + + +S G       S+     + G   + +   + +       G H V +  ++
Sbjct: 656 PEDHYIFMATSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDS 715

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            K + F  + +  M R  +GVR  + ++G     +     E  + + +    + +     
Sbjct: 716 GKAVRFDENDVRPMGRTARGVRGMNLEEGQQVIALLVAENEQQSVLTATENGFGKRTPIT 775

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  +   R+GK +++
Sbjct: 776 EYTRHGRGTKGMIAIQTSERNGKVVAA 802



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 85/263 (32%), Gaps = 16/263 (6%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G + T 
Sbjct: 594 IANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMF---------PLQDGEKITV 644

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              +S  ++   +   I        +               + A+   +GD L  A    
Sbjct: 645 ILPISGENRTFPEDHYIFMATSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTD 704

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVV 617
               ++L S  GKA      ++         ++ + +L   Q ++   V ++  + +L  
Sbjct: 705 GKHDVMLFSDSGKAVRFDENDVRPMGRTARGVRGM-NLEEGQQVIALLVAENEQQSVLTA 763

Query: 618 SSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVT-GDHVAVVGENRKLLIF 673
           +  G       +E   + R  KG   ++ S    K+     V   D + ++     L+  
Sbjct: 764 TENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDASDEIMLITTGGVLIRT 823

Query: 674 SIDQIPEMSRG-KGVRLQSYKDG 695
            + +I EM R  +GV L + +DG
Sbjct: 824 RVAEIREMGRATQGVTLIAVEDG 846


>gi|121594805|ref|YP_986701.1| DNA gyrase subunit A [Acidovorax sp. JS42]
 gi|120606885|gb|ABM42625.1| DNA gyrase subunit A [Acidovorax sp. JS42]
          Length = 888

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/814 (29%), Positives = 397/814 (48%), Gaps = 71/814 (8%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + S   T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+
Sbjct: 7   HPSVDMTQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHEL 66

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
             D+   +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD
Sbjct: 67  NNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGD 126

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE R++++A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIA
Sbjct: 127 SAAAMRYTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIA 186

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +A L L+  P+ ++++L+E I  PDFPT G I+     + E YR
Sbjct: 187 VGMATNIPPHNLNEVVDACLHLLRQPDATVDELMEIIPAPDFPTAG-IIYGINGVKEGYR 245

Query: 245 LGRGGFRVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
            GRG   +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K++  +  I+D
Sbjct: 246 TGRGKVVMRAKCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQD 305

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES +    ++    R   P++++ +++  + ++  F +NM  L     P++  L  +++ 
Sbjct: 306 ESDKSGMRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVD-GQPKLCNLKDLIEV 364

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------ 411
           +L HRREV+ RR+ F ++    R  +L+GL +A  NIDE I IIR               
Sbjct: 365 FLQHRREVVTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMAR 424

Query: 412 ---------------------------------KPKPVMVSRFSLTENQVDAILNLRLRS 438
                                            +        + L++ Q   IL +RL+ 
Sbjct: 425 SWDSQLVREMLTRTRADGGVVNADDYRPEGLEREFGMQEGGLYRLSDTQAQEILQMRLQR 484

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE+ +I +E  ++++  E +  +L    +    I  E+  +++ F +S    RR T 
Sbjct: 485 LTGLEQDKIVAEYKDVMSVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSKVGARRSTI 544

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDS 550
                 + +    + +I    + V +S+ G+         R+ K       A   KE D 
Sbjct: 545 E----HSAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDW 600

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV- 607
           +     A+T D IL  S  G+ Y L    +   S    G  I  +  L   + I      
Sbjct: 601 IDQLFIANTHDYILCFSNRGRLYWLKVWEVPSGSRNSRGRPIVNMFPLAEGEKINVVLPL 660

Query: 608 ------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                 + +   + + +S G        E     + G   + +   + +       G H 
Sbjct: 661 TGGMRTFPADHYVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHD 720

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +  +  K + F  + +  + R  +GVR    +DG     +     E  + + +    Y
Sbjct: 721 VMLFSDGGKAVRFDENDVRPLGRQARGVRGMMLEDGQSVIAMLVAEDENQSVLTATENGY 780

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  + +      RG  G +  +   R+GK +++
Sbjct: 781 GKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAA 814



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 77/262 (29%), Gaps = 14/262 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G +   
Sbjct: 606 IANTHDYILCFSNRGRLYWLKVWEVPSGSRNSRGRPIVNMF---------PLAEGEKINV 656

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++   +       +        +               + A++  +GD L  A    
Sbjct: 657 VLPLTGGMRTFPADHYVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTD 716

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               ++L S  GKA      ++         ++ ++  +    I      D    +L  +
Sbjct: 717 GQHDVMLFSDGGKAVRFDENDVRPLGRQARGVRGMMLEDGQSVIAMLVAEDENQSVLTAT 776

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFS 674
             G        E   + R  K  + +   E+   VV  T     D + ++ +   L+   
Sbjct: 777 ENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRTR 836

Query: 675 IDQIPEMSRG-KGVRLQSYKDG 695
           + +I E+ R  +GV L S  +G
Sbjct: 837 VSEIRELGRATQGVTLISLDEG 858



 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               +L  + +G                 + +  +     N  +V A +  +  ++++++
Sbjct: 768 ENQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLIT 827

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
             G       SEI    R   G T + +    K+  + ++  + 
Sbjct: 828 DTGVLVRTRVSEIRELGRATQGVTLISLDEGAKLSGLQRIVEND 871


>gi|295702248|ref|YP_003595323.1| DNA gyrase subunit A [Bacillus megaterium DSM 319]
 gi|294799907|gb|ADF36973.1| DNA gyrase, A subunit [Bacillus megaterium DSM 319]
          Length = 836

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 411/765 (53%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+        ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSDKP---NSQIREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY LI G GNFG++DGD+
Sbjct: 58  MGSDKPYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++V+  +L+ +++D +D++D Y+  + EP+V P++FPNLL NG++GIAV
Sbjct: 118 AAAMRYTEARMSKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+  +P+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQIL-GRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+V E+PYQV K++LIEKIAEL   K+I  + D+RDES
Sbjct: 237 GKGSIIVRAKVEIEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++L+ +++  + ++T F +N   L     P+V+ L   L+ +L
Sbjct: 297 DRSGMRIVIEVRRDANANVLLNNLYKQTSLQTSFGINTLALVD-GQPKVLNLKQCLQYYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+  V+ RR+ F ++  + R  IL+GL IA  N+D +IA+IR        +  ++++FS
Sbjct: 356 DHQVVVIRRRTEFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I++E  +LLA   ++ ++L   ++    I  E+ EV
Sbjct: 416 LSEKQAQAILDMRLQRLTGLEREKIEAEYQSLLALIAELKAILADEEKVLEIIREELIEV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT              + +I ++ I + +++ G+I+          +
Sbjct: 476 KERFND-----GRRTEIVSGGAEI--IEDEDLIPRQDIVISLTHNGYIKRLPVSTYKSQR 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  ++  E D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 529 RGGRGIQGMNTNEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPEYGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++++  + +      D       L   + +G +     S        G   L +  E++
Sbjct: 589 LLEVDKGEWVNAIIRVDEFVDDWYLFFTTKQGISKRTPLSSFENIRNSGLIALNLREEDE 648

Query: 650 MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G    V+  +   L+ F+ + +  M R   GV+  +         +   + E
Sbjct: 649 LISVKLTDGKRDMVIGTKKGMLIRFNENDVRSMGRTATGVKGITLDSEDEVIGMEI-LEE 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        +  RGG G        ++G  ++
Sbjct: 708 QSDVLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVA 752



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 55/159 (34%), Gaps = 8/159 (5%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +++ +  G        ++ S       +   I L+   +++   + +    +L+++  G 
Sbjct: 661 MVIGTKKGMLIRFNENDVRSMGRTATGV-KGITLDSEDEVIGMEILEEQSDVLIITKNGY 719

Query: 623 AFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                  E    TR GK      +   + + + L      + + ++  +  L+  S+  I
Sbjct: 720 GKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVALKCVSQEEDIMLITVSGVLIRVSVSDI 779

Query: 679 PEMSR-GKGVRLQSYKDGGIS--DVICFKICEGLTWIDS 714
            +M R  +GV++    D              +    +D 
Sbjct: 780 SQMGRNTQGVKVIRLGDEEFVSTVAKVQTSEDEDEVLDE 818


>gi|30248349|ref|NP_840419.1| DNA gyrase subunit A [Nitrosomonas europaea ATCC 19718]
 gi|30138235|emb|CAD84243.1| DNA gyrase/topoisomerase IV, subunit A [Nitrosomonas europaea ATCC
           19718]
          Length = 848

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/790 (32%), Positives = 400/790 (50%), Gaps = 65/790 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PVSLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+AAA RYTE RM++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMSR 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+ +P++ I +L+  I  PDFPT G I+     I + Y+ GRG   +RAR   
Sbjct: 190 VIDACLLLLRDPDVDIAELMACIPAPDFPTAG-IIYGISGIKDGYQTGRGRVIMRARTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ +G+   I++ E+PYQV K+ L+ +I EL+  KRI  + D+RDES +    V+    
Sbjct: 249 EELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + M+  F +NM  L     P+++ L  +L  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKETQMQDTFGINMVALVD-GQPRLLNLKQMLDHFLRHRREVVTRRTL 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------------- 415
           F ++    R  +L+GL +A  N+DEIIA+I+    P                        
Sbjct: 368 FELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKKGLMARTWRSSLVEEMLLRA 427

Query: 416 -----------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                            +    + L++ Q  AIL+LRL+ L  LE+ +I SE   +L + 
Sbjct: 428 MIDAAVFRPETLAAGFGMSDQGYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYREILDKI 487

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L + ++    I  E+  +K  F        RR+   EV    +    + +I   
Sbjct: 488 RDLLDILANPERITTIIVEELTAIKGQFGDP-----RRS---EVVIDAQNLNTEDLITPA 539

Query: 519 PITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+         R+ K       A+  +E D +     A+T D IL  S+ G
Sbjct: 540 DMVVTLSHAGYIKSQLLDDYRAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLG 599

Query: 571 KAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +   N+        G  +  L+ L  N+ I        +D T  + + ++ G    
Sbjct: 600 RVYWIKVYNVPQGSRTSRGRPVNNLVPLEQNEKINAVLPVKSFDDTRYVFMSTAGGTVKK 659

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
              SE       G   + +   + +  V    G H V +  +  K + F  + +    R 
Sbjct: 660 TPLSEFSRPRTNGIIAIDLDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRPTGRN 719

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR      G     +     E +  + +    Y +           RG  G +    
Sbjct: 720 ARGVRGMKLGAGQQVISLLVADNENMAVLTATENGYGKRTPITEYTRHNRGTQGMIAINT 779

Query: 744 FPRSGKFLSS 753
             R+GK +++
Sbjct: 780 NVRNGKVVAA 789



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 64/169 (37%), Gaps = 7/169 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  +  + A+   EGD L           ++L S  GKA      ++     +   ++ +
Sbjct: 667 RPRTNGIIAIDLDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRPTGRNARGVRGM 726

Query: 594 IDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEIIANTRK--GKTFLK--VSSEE 648
             L   Q +++  V D+    +L  +  G       +E   + R   G   +   V + +
Sbjct: 727 -KLGAGQQVISLLVADNENMAVLTATENGYGKRTPITEYTRHNRGTQGMIAINTNVRNGK 785

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
            +   +  + D + ++     ++   + +I EM R  +GV L +   G 
Sbjct: 786 VVAAQLVESSDEIMLITTGGVMIRTRVSEIREMGRATQGVTLINLDAGE 834


>gi|307825274|ref|ZP_07655494.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96]
 gi|307733730|gb|EFO04587.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96]
          Length = 877

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/801 (33%), Positives = 406/801 (50%), Gaps = 69/801 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN        +  V+L   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G
Sbjct: 1   MSNFAK----EIIPVNLEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDTAVYDTMVRMAQNFSMRYMLIDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM+++A  +L  +D++ VDF   Y+E +SEP V P++ P LL NG+SGIAV
Sbjct: 117 PAAMRYTEVRMSKIAHELLADLDKETVDFAPNYDESESEPKVLPTRVPTLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A LA+ID P++++  L+ +I GPDFPT   I+     I  +Y  
Sbjct: 177 GMATNIPPHNLSEVISACLAMIDQPDLTVHDLMAHIPGPDFPTAA-IINGASGIYNAYTT 235

Query: 246 GRGGFRVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR   E++G      I+ TE+PYQV K+RL+EKIAEL+   ++  +  +RDE
Sbjct: 236 GRGKIYLRARCHFEDIGDSSRQAIITTELPYQVNKARLLEKIAELVKEGKLEGISGLRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R   P++++ +++  +  +T F +NM  L     P  M L  I+  +
Sbjct: 296 SDKDGMRMVIELRRGEMPEVVLNNLYKQTQFQTVFGINMVALLD-GRPHCMNLREIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRRE++ RR+ + ++    R  IL+GL IA  NIDE+IA+I+    P           
Sbjct: 355 INHRREIVTRRTIYNLRKARERAHILEGLAIALANIDEMIALIKAAATPADAKVGLLEKN 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + L+E Q  AIL LRL  L  LE+ +I
Sbjct: 415 WDAGLVAALLDRADADRSRPDDLPVEFGIHAGIYRLSETQAQAILELRLHRLTGLEQDKI 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
            +E   LL + ++   +L S  +    I  E+  +KE +S       RRT   +      
Sbjct: 475 VNEYKQLLEQIDEYLFILGSDVRLMEIIREELVAIKEQYSDE-----RRTEILQNHSD-- 527

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S+ G+++S                SA   KE D +   + A+T
Sbjct: 528 -LSDEDLITEEDMVVTMSHEGYVKSQPLSDYKAQRRGGRGKSATATKELDYVDKLIVANT 586

Query: 560 TDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  S+ GK Y L    L   S    G+    L+ L   + I        +  +  +
Sbjct: 587 HDTILCFSSRGKVYWLKVYQLPVASRAARGKPFVNLLPLEEGEKINAILPIREFTDSKFI 646

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIF 673
            + ++ G        E       GK  + +  ++ +  V    G   V +     K + F
Sbjct: 647 FMATTAGTVKKTPLKEFENQRANGKIAIDLREDDTLVGVAVTDGQQNVLLFSSTGKAVCF 706

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           +   +  M R   GVR    ++G    VI   I    T ++     Y +          K
Sbjct: 707 NEADVRSMGRTASGVRGIRLQEGQ--KVISLIIATEGTVLNITENGYGKRTKLEEFTCHK 764

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           RGG G +  +   R+G  + +
Sbjct: 765 RGGQGLIAIQTSARNGAVVGA 785



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 9/158 (5%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 +LL S+ GKA      ++ S      +    I L   Q +++  +      +L 
Sbjct: 688 TDGQQNVLLFSSTGKAVCFNEADVRSMGRTA-SGVRGIRLQEGQKVISLIIATEGT-VLN 745

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           ++  G     +  E   + R G+  + +     +   +  V+    D + ++ +   L+ 
Sbjct: 746 ITENGYGKRTKLEEFTCHKRGGQGLIAIQTSARNGAVVGAVLVNDNDEIMLITDGGTLVR 805

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             +D I  + R  +GV +     G    VI     EGL
Sbjct: 806 TPVDGISVVGRNTQGVTIIKL--GKNEKVIGVDRIEGL 841


>gi|222528065|ref|YP_002571947.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725]
 gi|222454912|gb|ACM59174.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725]
          Length = 809

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/751 (33%), Positives = 404/751 (53%), Gaps = 23/751 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSKIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+DN   S++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   +VVTE+PY V K+RLIEKIAEL+  KRI  + DIRDES ++   ++  
Sbjct: 246 ATIEQTSKGRQRLVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L     P+V+ L  +L  ++ H++EV+ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVD-NQPKVLTLMDMLNLYIEHQKEVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+             RF  TE Q  AIL
Sbjct: 365 TKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISRFQFTEVQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIRMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIE------KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             RRT   +    D    +    +           +        +S K     ++ +  +
Sbjct: 482 --RRTKIIQDEHEDFEEEELIQEQETVITLTHFGYIKRLPLDTYKSQKRGGRGITGISTR 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D ++      T   IL  +  G+ + L A  +  G    +  AI  LI +  ++ I  
Sbjct: 540 EEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKITA 599

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
                      L++ +  G    V  SE     + GK  + ++ ++ +  V   +G D +
Sbjct: 600 TMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTGKSGKKAITLADDDSLVDVKLTSGNDEI 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V  N   ++F+ + +  M R  +GV+  + +DG    V   K  +G   +      + 
Sbjct: 660 VLVSSNGYCVVFNENDVRSMGRSAQGVKGMTLEDGDFI-VGMEKASDGKYLLCVTENGFG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +          KRG  G L  K   ++G+ +
Sbjct: 719 KRSEIEEYRKTKRGAKGVLTYKVTEKTGRIV 749



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              A+   + DSL         D I+L+S++G        ++ S     + +   + L  
Sbjct: 635 GKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSMGRSAQGV-KGMTLED 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVK 655
              IV          LL V+  G     E  E     R  K  L     E   ++  +  
Sbjct: 694 GDFIVGMEKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTEKTGRIVDIKM 753

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           V   D + +       +   + QIP   R  +GV+L    DG    V    
Sbjct: 754 VNDEDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRI-DGDNIKVSSIA 803


>gi|82703307|ref|YP_412873.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196]
 gi|82411372|gb|ABB75481.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196]
          Length = 893

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/796 (31%), Positives = 389/796 (48%), Gaps = 50/796 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            S       +    +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+ 
Sbjct: 29  PSKVMDQFAKETLQISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELS 88

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+
Sbjct: 89  NDWNRPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDN 148

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM+++A  +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAV
Sbjct: 149 PAAMRYTEIRMSRIAHEMLADLDKETVDFGPNYDGTEKEPLILPTKIPNLLINGSSGIAV 208

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A LAL+ NPEI+IE L+E I GPDFPT   ++     + E YR 
Sbjct: 209 GMATNIPPHNLNEVTDACLALLKNPEIAIEDLIELIPGPDFPTAA-LIYGVTGVKEGYRT 267

Query: 246 GRGGFRVRARWCV--EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           GRG   +RAR      E G G   IV+ E+PYQV K+ L+ +I EL+  K+I  + D+RD
Sbjct: 268 GRGRVIMRARTHFEDMEKGGGRQSIVIDELPYQVNKANLLIRIGELVRDKKIEGISDLRD 327

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES +    V+    R+  P++++ +++  + M+  F +NM  L     P+++ L  +L+ 
Sbjct: 328 ESDKSGMRVVIELRRNEVPEVVLNNLYKETQMQDTFGMNMVALLD-GQPRLLNLKQMLEA 386

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------- 416
           +L HRREV+ RRS F ++    R  +L+GL +A  N+DE+IA+I+    P          
Sbjct: 387 FLRHRREVVTRRSVFELKKARERGHVLEGLAVALSNVDEVIALIKAAQTPAAAKEALMSR 446

Query: 417 --------------------------------MVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                               + L++ Q  AIL LRL+ L  LE+
Sbjct: 447 VWRSRLVEQMLARAAVDAKQFRPEGLAPEYGLFDDGYHLSDGQAQAILELRLQRLTGLEQ 506

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I SE  +++     +  +L   ++    I  E+  +K+ F           T      
Sbjct: 507 DKIVSEYRDVMERIADLLDILARPERITAIITEELVAMKQQFGDKRRSEIVINTQDLSME 566

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
              A+    +       +        R+ K       A   K+ D +     A+T D IL
Sbjct: 567 DLIASEDVVVTLSHNGYIKSQPLDDYRAQKRGGRGKQATGTKDDDFIDNLFIANTHDYIL 626

Query: 565 LLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S+ G+ Y +   ++        G  I  L+ L + + I        +D    + + +S
Sbjct: 627 CFSSRGRVYWIKVYSVPQGGRASRGRPIVNLMQLEYGEKINAVLPIKTFDDNRYVFMATS 686

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
            G       SE       G   + +  ++ +  V    G H V +  +  K + F  + +
Sbjct: 687 LGTVKKTPLSEFSRPRASGIIAVGLDEDDFLIGVALTEGKHDVMLFSDGGKAVRFDENDV 746

Query: 679 PEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             M RG +GVR  +   G     +     E    + +    Y +           RG  G
Sbjct: 747 RPMGRGARGVRGMTLGKGQKVISLLVAESEEQAVLTATENGYGKRTPISEYTRHGRGSQG 806

Query: 738 SLVPKGFPRSGKFLSS 753
            +  K   R+GK + +
Sbjct: 807 MIAIKTTQRNGKVVGA 822



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 62/169 (36%), Gaps = 7/169 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  +  + A+   E D L           ++L S  GKA      ++         ++ +
Sbjct: 700 RPRASGIIAVGLDEDDFLIGVALTEGKHDVMLFSDGGKAVRFDENDVRPMGRGARGVRGM 759

Query: 594 IDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEK 649
             L   Q +++  V +     +L  +  G       SE   + R  +  + + +     K
Sbjct: 760 -TLGKGQKVISLLVAESEEQAVLTATENGYGKRTPISEYTRHGRGSQGMIAIKTTQRNGK 818

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
           +     V   D + ++     L+   + ++ EMSR  +GV L +  +G 
Sbjct: 819 VVGARLVREDDEIMLITTGGVLIRTRVKEVREMSRATQGVILINLDEGE 867



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 3/97 (3%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G     P           + +  +     N  +V A +     +++++++ G     
Sbjct: 784 TENGYGKRTPISEYTRHGRGSQGMIAIKTTQRNGKVVGARLVREDDEIMLITTGGVLIRT 843

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLV-VKVTGDH 660
              E+   +R   G   + +   EK+  +   V  D 
Sbjct: 844 RVKEVREMSRATQGVILINLDEGEKLAGLERVVETDE 880


>gi|187934554|ref|YP_001884272.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B]
 gi|187722707|gb|ACD23928.1| DNA gyrase, A subunit [Clostridium botulinum B str. Eklund 17B]
          Length = 849

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/761 (32%), Positives = 407/761 (53%), Gaps = 30/761 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  + +V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M  +GL    
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  + LIDNPE S+ +L+  I GPDFPTG   +     I  +Y  GRG  
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSVLELMTKIKGPDFPTGA-TIMGHAGIRSAYETGRGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE   G   I+ TEIPYQV K+RLIE IAEL+  K+I  + D+RDES  D  
Sbjct: 241 VIRAKSNIEEEN-GRHKIIFTEIPYQVNKARLIENIAELVKDKKITGISDLRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  +P++++  ++  + ++  F + M  L      +V+ L  +L  ++  ++E
Sbjct: 300 RIVIELKKDANPNIILNLLYKHTKLQDSFGVIMLALVNNET-KVLNLKEVLVHYVDFQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR++F +   + R  IL+GL IA  NID +I+IIRN       K  ++  F+L+E Q
Sbjct: 359 VITRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFALSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL ++LR L  LE  +I  E + LL + E + S+L S ++    I  E+ E+K  + 
Sbjct: 419 SQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLEVIKNELLEIKAKYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT+  +          + +I++E + + ++  G+I+          +     
Sbjct: 479 DE-----RRTSIEQ---DMNEINIEDLIQEEDVVITLTKSGYIKRISADVYSAQRRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLN 597
           + A+  KE D +   +   T   +L  +  G+ Y L A  +       +      LI + 
Sbjct: 531 IQAMSTKEDDFVDHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIAIE 590

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T            L + + +G       +E     + G   + +   +++  V 
Sbjct: 591 PDEKIQTVLTVTDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLKVK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD +V  V +N   L F+   +  M R   GV+  + K   I+  +   + E    +
Sbjct: 651 ITYGDANVMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKGDDIAVCMDIAVDEEE-LL 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +        +  RGGVG +  K   ++GK + +
Sbjct: 710 VISENGFGKRTPVNEYKVQHRGGVGLITYKISEKTGKLVGA 750



 Score = 71.0 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 61/199 (30%), Gaps = 6/199 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               L A++ +E D L      +    ++ ++ +G A      ++  
Sbjct: 618 IVKKTHLNEFRNLRKNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVRH 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 +    I L  +   V   +     +LLV+S  G       +E     R G   +
Sbjct: 678 MGRTA-SGVKAITLKGDDIAVCMDIAVDEEELLVISENGFGKRTPVNEYKVQHRGGVGLI 736

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
                EK   +         D + ++  N   +  ++  I + SR   GV L    +   
Sbjct: 737 TYKISEKTGKLVGATICKLDDELMLINTNGVAIRINVSDISKTSRSAMGVTLMRTNEEEK 796

Query: 698 SDVICFKICEGLTWIDSAG 716
              I   +      ++   
Sbjct: 797 IVAIAKILKGDDEDLEQNE 815


>gi|73760122|dbj|BAE19968.1| DNA gyrase subunit A [Photobacterium damselae subsp. piscicida]
          Length = 874

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/793 (33%), Positives = 406/793 (51%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +++D VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN EI+I++L+EYI GPDFPT  +I   R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMIS-GRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +R++  +E E   G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDE
Sbjct: 236 GRGKIYMRSKAEIEVEDKNGKETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISRLRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK +
Sbjct: 296 SDKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALD-NGQPKLFNLKEMLKCF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P           
Sbjct: 355 VNHRREVVTRRTIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARG 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +  + + LTE Q  AIL+LRL  L  LE  +I
Sbjct: 415 WELGNVAAMLERAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKI 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL E  ++  +L+S ++    I  E+  VKE F+ +        T         
Sbjct: 475 LDEYKALLEEIAELLHILSSAERLMEVIREELELVKEQFNDARRTEITAATHDIDLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      +A   K+ D ++  L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHEGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           T G+ Y L    L   S    G+ I  ++ L  N+ I        Y++   + + ++ G 
Sbjct: 595 TRGRMYWLKVYQLPLASRTARGKPIVNILPLEENERITAILPVKEYEADKFVFMATADGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 ++       G   + + +E+ +  V    G + + +  +  K++ F+  Q+  M
Sbjct: 655 VKKTPLTDFSRPRSAGIIAVNLRNEDTLIGVDITDGNNDIMLFSKAGKVVRFNEGQVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +      +     +G   +      Y +           R   G + 
Sbjct: 715 GRTAAGVRGIKLAESDNVVSLIVPHNDGD-VLTVTENGYGKRTELEEYPAKSRATQGVVS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVSERNGSVVGA 786


>gi|294496881|ref|YP_003560581.1| DNA gyrase subunit A [Bacillus megaterium QM B1551]
 gi|294346818|gb|ADE67147.1| DNA gyrase, A subunit [Bacillus megaterium QM B1551]
          Length = 836

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 411/765 (53%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+        ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSDKP---NSQIREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY LI G GNFG++DGD+
Sbjct: 58  MGSDKPYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++V+  +L+ +++D +D++D Y+  + EP+V P++FPNLL NG++GIAV
Sbjct: 118 AAAMRYTEARMSKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+  +P+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQIL-GRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+V E+PYQV K++LIEKIAEL   K+I  + D+RDES
Sbjct: 237 GKGSIIVRAKVEIEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++L+ +++  + ++T F +N   L     P+V+ L   L+ +L
Sbjct: 297 DRSGMRIVIEVRRDANANVLLNNLYKQTSLQTSFGINTLALVD-GQPKVLNLKQCLQYYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+  V+ RR+ F ++  + R  IL+GL IA  N+D +IA+IR        +  ++++FS
Sbjct: 356 DHQVVVIRRRTEFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I++E  +LLA   ++ ++L   ++    I  E+ EV
Sbjct: 416 LSEKQAQAILDMRLQRLTGLEREKIEAEYQSLLALIAELKAILADEEKVLEIIREELIEV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT              + +I ++ I + +++ G+I+          +
Sbjct: 476 KERFND-----GRRTEIVSGGAEI--IEDEDLIPRQDIVISLTHNGYIKRLPVSTYKSQR 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  ++  E D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 529 RGGRGIQGMNTNEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPEYGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++++  + +      D       L   + +G +     S        G   L +  E++
Sbjct: 589 LLEVDKGEWVNAIIRVDEFVDDWYLFFTTKQGISKRTPLSSFENIRNSGLIALNLREEDE 648

Query: 650 MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G    V+  +   L+ F+ + +  M R   GV+  +         +   + E
Sbjct: 649 LISVKLTDGKRDMVIGTKKGMLIRFNENDVRSMGRTATGVKGITLDSEDEVIGMEI-LEE 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        +  RGG G        ++G  ++
Sbjct: 708 QSDVLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVA 752



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 55/159 (34%), Gaps = 8/159 (5%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +++ +  G        ++ S       +   I L+   +++   + +    +L+++  G 
Sbjct: 661 MVIGTKKGMLIRFNENDVRSMGRTATGV-KGITLDSEDEVIGMEILEEQSDVLIITKNGY 719

Query: 623 AFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                  E    TR GK      +   + + + L      + + ++  +  L+  S+  I
Sbjct: 720 GKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVALKCVSQEEDIMLITVSGVLIRVSVSDI 779

Query: 679 PEMSR-GKGVRLQSYKDGGIS--DVICFKICEGLTWIDS 714
            +M R  +GV++    D              +    +D 
Sbjct: 780 SQMGRNTQGVKVIRLGDEEFVSTVAKVQTSEDEDEVLDE 818


>gi|147676343|ref|YP_001210558.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum
           SI]
 gi|146272440|dbj|BAF58189.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum
           SI]
          Length = 808

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/759 (33%), Positives = 407/759 (53%), Gaps = 31/759 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   V  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM  +GL      
Sbjct: 4   MTGKVIPIDINEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHSLGLTPDRPH 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA IVGEV+ K HPHGD +VYD+LVRLAQ F  RYPL+ G GNFG++DGDSAAA RYT
Sbjct: 64  RKSAYIVGEVLAKYHPHGDVAVYDALVRLAQDFACRYPLVDGHGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM ++   +L  ++++ V+F   Y+ +  EP V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EARMARITLEMLADIEKETVNFIPNYDGKTVEPTVLPARIPNLLINGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  + LIDNP+ +I  L+  I GPDFPTGG I   RE I ++YR GRG  +V
Sbjct: 184 PHNLGEVIDGVIMLIDNPDANIRDLMSVIKGPDFPTGGKI-MGREGIWDAYRTGRGSIKV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E++G G   IVV+EIPYQV K+RLIEKIAEL+  K+I  + D+RDES      +
Sbjct: 243 RAQASIEKIGGGRHSIVVSEIPYQVNKARLIEKIAELVKDKKIDGISDLRDESDRRGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +P +++  ++  + M+  F + M  L     P+V+ L  +L  +L H+++V+
Sbjct: 303 VIELRRDANPQVVLNQLYKHTQMQDSFGVIMLALV-EGEPRVLNLKEVLFYYLQHQKDVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ F +   + R  I++GL IA  ++DE+I  IR+   P   +  ++ +F LTE Q +
Sbjct: 362 VRRTRFELNRAEARAHIVEGLRIAIAHLDEVIKTIRSSRTPEVARKALMEKFGLTEKQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE  +++ E   L+ +   + S+L+  ++    I  E+  VK+ F+  
Sbjct: 422 AIVEMRLRQLTGLEREKLEQEYRELVEKIAYLRSVLDDERKVLGIIKDELLAVKKKFADP 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT       A     ++ +I +E + + I+++G+I+ +   +          ++
Sbjct: 482 -----RRTAITSEEAA---FEEEDLIPEEDVVITITSQGYIKRIPLDTYRSQRRGGRGVT 533

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
           A+  KE D ++      T    L  +  GK Y L    +       +  AI  L+ +   
Sbjct: 534 AMGTKEEDFVRHLFITTTHHFFLFFTNQGKVYRLKVHEIPEAGRQAKGTAIVNLLYIGSE 593

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I T      +D    L + + +G       +E   + R G   + ++  + +  V   
Sbjct: 594 EKITTVIPVREFDPAQYLFMATKRGIVKKTPLNEYDTSRRDGIIAISLNEGDHLVDVKLT 653

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWID 713
            G + + +       + F  +++    R  +GV+  +   D  +  +   +  E    + 
Sbjct: 654 GGREEIILATRGGLAIRFLEEEVRPTGRVTQGVKGINLVGDDEVVGMEVARPDE--FLLS 711

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                + +           RGG G +  K   R+G  ++
Sbjct: 712 VTANGFGKRTRLSEYRAQARGGKGIINIKTTARNGPLVA 750



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 5/120 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I+L  + ++V   V      LL V++ G       SE  A  R GK  + + +  +   +
Sbjct: 689 INLVGDDEVVGMEVARPDEFLLSVTANGFGKRTRLSEYRAQARGGKGIINIKTTARNGPL 748

Query: 651 KLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
             +  V G+  V ++     ++      IP M R  +GV L     G           E 
Sbjct: 749 VAIQAVKGEEEVMMISAEGIIIRLKAQDIPVMGRATQGVTLMRLDRGDSLVAAAKVETEE 808


>gi|257878651|ref|ZP_05658304.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933]
 gi|257812879|gb|EEV41637.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933]
          Length = 823

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 398/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDYAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKEDQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|91776041|ref|YP_545797.1| DNA gyrase subunit A [Methylobacillus flagellatus KT]
 gi|91710028|gb|ABE49956.1| DNA gyrase subunit A [Methylobacillus flagellatus KT]
          Length = 864

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/801 (29%), Positives = 381/801 (47%), Gaps = 50/801 (6%)

Query: 1   MGVDNISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M + ++   + ++++       +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+
Sbjct: 1   MALSHLKADSKIMDQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRV 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGN
Sbjct: 61  LFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG++DGD+AAA RYTE RM ++A  +L  +D++ VDF   Y+  + EP++ P++ PNLL 
Sbjct: 121 FGSVDGDNAAAMRYTEIRMARIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLI 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG+SGIAVGMAT+IP HN+ E+  A LAL+ NPE ++++L+E I  PDFPT G I+    
Sbjct: 181 NGSSGIAVGMATNIPPHNLNEVIAACLALLKNPETTVDELIEIIPAPDFPTAG-IIYGTV 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
            + E YR GRG   +R R  VE++       ++V E+PYQV K   +EKIAEL+  K+I 
Sbjct: 240 GVREGYRTGRGRVVMRGRTHVEDLEKGNRQALIVDELPYQVNKKTFVEKIAELVNEKKIE 299

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES +    V+    R   P++++ +++  + ++  F +NM  L     P+++ 
Sbjct: 300 GISDLRDESDKSGMRVVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALLD-GQPRLLN 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           L  +L+ +L HRREV+ RR+ + ++    R  +L+GL +A  N+DE+IA+I+    P   
Sbjct: 359 LKQMLEAFLRHRREVVTRRTVYELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEA 418

Query: 417 M-------------------------------------VSRFSLTENQVDAILNLRLRSL 439
                                                    + L++ Q   IL +RL+ L
Sbjct: 419 KRELMARTWKSPVVEEMLKRAAMEASRPEGLAVNFGLTPDGYKLSDVQAQEILQMRLQRL 478

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE+ +I +E   ++     +  +L   ++    I  E+  +   F             
Sbjct: 479 TGLEQDKIVNEYKEIMDVIADLLDILARSERVTQIIVEELTAILNQFGDKRRSEIVHNAQ 538

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
                         +       V        R+ +       A   KE D +     A+T
Sbjct: 539 DLSLEDLITPQDVVVTLSHTGYVKSQPLEEYRAQRRGGRGKQAAATKEDDFIDKMFVANT 598

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  S+ G+ Y L    +        G+ I  L  L   + I        +D    +
Sbjct: 599 HDYILCFSSRGRVYWLKVYEVPQGSRVSRGKPIVNLFPLEDGEKINAILPVKEFDENHFV 658

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
            + ++KG       +E     R G   L +   + +       G + + +V    K + F
Sbjct: 659 FMATAKGTVKKTALTEFSNPRRSGIIALNLDDGDYLIGAEVTNGVNDIVLVSNGGKAVWF 718

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
             + +  M R  +GVR    +       +     +  T + +    Y +           
Sbjct: 719 DEEDVRPMGRAARGVRGMKLQGKQQVISLLIADNDKQTVLVATENGYGKRTVLADFRHSG 778

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           RG  G        R+G  + +
Sbjct: 779 RGTQGVKAIATSERNGIVVGA 799



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 67/180 (37%), Gaps = 7/180 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + AL+  +GD L  A   +  + I+L+S  GKA      ++  
Sbjct: 666 TVKKTALTEFSNPRRSGIIALNLDDGDYLIGAEVTNGVNDIVLVSNGGKAVWFDEEDVRP 725

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEIIANTRK--GK 639
                  ++ +  L   Q +++  + D+  + +LV +  G       ++   + R   G 
Sbjct: 726 MGRAARGVRGM-KLQGKQQVISLLIADNDKQTVLVATENGYGKRTVLADFRHSGRGTQGV 784

Query: 640 TFLKVSSEEK-MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
             +  S     +     V   D + ++     L+   + +I E+ R  +GV L +  +G 
Sbjct: 785 KAIATSERNGIVVGARLVGDDDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGEGE 844



 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 58/190 (30%), Gaps = 14/190 (7%)

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                 RR              +   +       V++SN G         V       + 
Sbjct: 673 TEFSNPRRSGIIALNLDDGDYLIGAEVTNGVNDIVLVSNGGKAVWFDEEDVRPMGRAARG 732

Query: 548 GDSLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              +K+          +  +    +L+ + +G        +        + ++ +     
Sbjct: 733 VRGMKLQGKQQVISLLIADNDKQTVLVATENGYGKRTVLADFRHSGRGTQGVKAIATSER 792

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL---V 653
           N  +V A +     +++++++ G        EI    R   G T + +   EK+     V
Sbjct: 793 NGIVVGARLVGDDDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGEGEKLSGLEKV 852

Query: 654 VKVTGDHVAV 663
           V+   D+ AV
Sbjct: 853 VETDDDNEAV 862


>gi|291326671|ref|ZP_06125386.2| DNA gyrase, A subunit [Providencia rettgeri DSM 1131]
 gi|291313392|gb|EFE53845.1| DNA gyrase, A subunit [Providencia rettgeri DSM 1131]
          Length = 898

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/803 (32%), Positives = 412/803 (51%), Gaps = 66/803 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +S ++ E    +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ 
Sbjct: 27  MRDSGSMSEIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNV 86

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+   +KKSARIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DG
Sbjct: 87  LGNDWNKPYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDG 146

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGI
Sbjct: 147 DSAAAMRYTEIRMAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGI 206

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+    LA I++ +ISIE L+E+I GPDFPT   I+  R  I+++Y
Sbjct: 207 AVGMATNIPPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAA-IINGRRGIIDAY 265

Query: 244 RLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           R GRG   +RA   VE +   G   I+V+EIPYQV K+RLIEKIAEL+  KR+  +  +R
Sbjct: 266 RTGRGKVYIRASAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKDKRVEGISALR 325

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  I+ 
Sbjct: 326 DESDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKILNLKDIIA 384

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------- 415
            ++ HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P         
Sbjct: 385 AFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRKAPTPAEAKAGLIA 444

Query: 416 ------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                         V   ++ LTE Q  AIL+LRL+ L  LE  
Sbjct: 445 RSWDLGNVAAMLERAGDDAARPEWLEPQFGVHEGQYFLTEQQAQAILDLRLQKLTGLEHE 504

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++  E  +LL + E +  +L S ++    I  E+  +++ ++       RRT   E +  
Sbjct: 505 KLLEEYRDLLVQIEALLFILRSPERLMEVIREELEIIRDTYNDP-----RRTEITENTAD 559

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I +E + V +S++G+          + +      SA   K+ D ++  L A
Sbjct: 560 ---INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARTKDEDFIERLLVA 616

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
           +T D IL  S+ G+ Y +    L        G  I  L+ L  ++ I        Y+   
Sbjct: 617 NTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY 676

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            + + ++ G        E       G   + ++  +++  V    G + V +     K++
Sbjct: 677 NVFMATASGTVKKTPLQEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAQGKVV 736

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F+ D +  M R   GVR     D      +     EG   +      Y +   +     
Sbjct: 737 RFAEDAVRPMGRTATGVRGIKLMDNDKVVSLIIPRGEG-HILTVTENGYGKRTEEAEYPT 795

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+G  + +
Sbjct: 796 KSRATQGVISIKVSERNGNVVGA 818


>gi|312126270|ref|YP_003991144.1| DNA gyrase subunit A [Caldicellulosiruptor hydrothermalis 108]
 gi|311776289|gb|ADQ05775.1| DNA gyrase, A subunit [Caldicellulosiruptor hydrothermalis 108]
          Length = 809

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/751 (33%), Positives = 403/751 (53%), Gaps = 23/751 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+DN    ++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   IVVTE+PY V K+RLIEKIAEL+  KRI  + DIRDES ++   ++  
Sbjct: 246 ATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L     P+V+ L  +L  ++ H++EV+ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVD-NQPKVLTLMDMLNLYIEHQKEVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+             +F  TE Q  AIL
Sbjct: 365 TKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISKFQFTEVQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIE------KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             RRT   +    D    +    +           +        +S K     ++ +  +
Sbjct: 482 --RRTKIVQDEHEDFEEEELIQEQETVITLTHFGYIKRLPLDTYKSQKRGGRGITGISTR 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D ++      T   IL  +  G+ + L A  +  G    +  AI  LI +  ++ I  
Sbjct: 540 EEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKITA 599

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
                      L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D +
Sbjct: 600 TMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGNDEI 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V  N   ++F+ + +  M R  +GV+  + +DG    V   K  +G   +      + 
Sbjct: 660 VLVSSNGYCVVFNENDVRSMGRTAQGVKGMTLEDGDFI-VGMEKASDGKYLLCVTENGFG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +          KRG  G L  K   ++G  +
Sbjct: 719 KRSEIEEYRKTKRGAKGVLTYKVTDKTGSIV 749



 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 59/176 (33%), Gaps = 8/176 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              A+   + DSL         D I+L+S++G        ++ S     + +   + L  
Sbjct: 635 GKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSMGRTAQGV-KGMTLED 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656
              IV          LL V+  G     E  E     R  K  L     +K   +V +  
Sbjct: 694 GDFIVGMEKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTDKTGSIVDIKM 753

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG--GISDVICFKICE 707
               D + +       +   + Q+P   R  +GV+L         +S +   K+ E
Sbjct: 754 VNDDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDSDNIKVSSIARIKVDE 809


>gi|222110596|ref|YP_002552860.1| DNA gyrase subunit a [Acidovorax ebreus TPSY]
 gi|221730040|gb|ACM32860.1| DNA gyrase, A subunit [Acidovorax ebreus TPSY]
          Length = 877

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/808 (30%), Positives = 395/808 (48%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+  P+ ++++L+E I  PDFPT G I+     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLLRQPDATVDELMEIIPAPDFPTAG-IIYGINGVKEGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K++  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L     P++  L  ++K +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVD-GQPKLCNLKDLIKVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------------ 411
           EV+ RR+ F ++    R  +L+GL +A  NIDE I IIR                     
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQL 419

Query: 412 ---------------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                      +        + L++ Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRADGGVVNADDYRPEGLEREFGMQDGGLYRLSDTQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  ++++  E +  +L    +    I  E+  +++ F +S    RR T       
Sbjct: 480 DKIVAEYKDVMSVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSKVGARRSTIE----H 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+         R+ K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPSGSRNSRGRPIVNMFPLAEGEKINVVLPLTGGMRT 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADHYVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  + R  +GVR    +DG     +     E  + + +    Y +  + 
Sbjct: 716 GGKAVRFDENDVRPLGRQARGVRGMMLEDGQSVIAMLVAEDENQSVLTATENGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      RG  G +  +   R+GK +++
Sbjct: 776 VEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 77/262 (29%), Gaps = 14/262 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G +   
Sbjct: 595 IANTHDYILCFSNRGRLYWLKVWEVPSGSRNSRGRPIVNMF---------PLAEGEKINV 645

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++   +       +        +               + A++  +GD L  A    
Sbjct: 646 VLPLTGGMRTFPADHYVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTD 705

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               ++L S  GKA      ++         ++ ++  +    I      D    +L  +
Sbjct: 706 GQHDVMLFSDGGKAVRFDENDVRPLGRQARGVRGMMLEDGQSVIAMLVAEDENQSVLTAT 765

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFS 674
             G        E   + R  K  + +   E+   VV  T     D + ++ +   L+   
Sbjct: 766 ENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRTR 825

Query: 675 IDQIPEMSRG-KGVRLQSYKDG 695
           + +I E+ R  +GV L S  +G
Sbjct: 826 VSEIRELGRATQGVTLISLDEG 847



 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               +L  + +G                 + +  +     N  +V A +  +  ++++++
Sbjct: 757 ENQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLIT 816

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
             G       SEI    R   G T + +    K+  + ++
Sbjct: 817 DTGVLVRTRVSEIRELGRATQGVTLISLDEGAKLSGLQRI 856


>gi|260768285|ref|ZP_05877219.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972]
 gi|260616315|gb|EEX41500.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972]
          Length = 878

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/792 (32%), Positives = 401/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLTEVIDGCLAFIDNESITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NID+II +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 ALGNVAAMLERAGTDAARPEWLELQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E++ V++ +  +        +         A
Sbjct: 475 DEYKQLLEEIAELMHILASTERLMEVIREELQAVRDGYGDARRTEITAASHDIDLEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEDNERITAILPVTEFSDDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V    GD  + +  ++ K++ F+ DQ+  M 
Sbjct: 655 KKTSLDQFSNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     +G     +     +G   +      Y +           R   G +  
Sbjct: 715 RTASGVRGMKLMEGDQVVSLIVPKTDGD-ILTVTENGYGKRTVLAEYPAKSRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G+ + +
Sbjct: 774 KVSERNGRVVGA 785


>gi|315122223|ref|YP_004062712.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495625|gb|ADR52224.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 753

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 641/750 (85%), Positives = 694/750 (92%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG D   NS+ LVEEN  +VSL+ ALEERYLAYALSTIKERAIPD RDGFKPVHRRIIHA
Sbjct: 1   MGSDKTPNSDDLVEENFNSVSLKSALEERYLAYALSTIKERAIPDSRDGFKPVHRRIIHA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMGLDF AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ FVQRYPLI GQGNFGN
Sbjct: 61  MSEMGLDFNAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQSFVQRYPLIRGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAAYRYTEARMTQVA+LILQGVDE+AVDFRDTYNEEDSEPVVFP KFPNLLANG+
Sbjct: 121 IDGDSAAAYRYTEARMTQVADLILQGVDENAVDFRDTYNEEDSEPVVFPGKFPNLLANGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIPSHNV+EICEAAL LI++PE S+EKLLE+IIGPDFPTGGIIVESRESI 
Sbjct: 181 SGIAVGMATSIPSHNVEEICEAALILINDPESSLEKLLEHIIGPDFPTGGIIVESRESIF 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ESYR GRGGFRVRA+WCVE++GRGSWCIVV+EIPYQVQKSRLIEKIA+LI+ KRIPLLED
Sbjct: 241 ESYRSGRGGFRVRAKWCVEDLGRGSWCIVVSEIPYQVQKSRLIEKIADLIMTKRIPLLED 300

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAED+RIVLFPKNRS+DPDLLMES+F+LSD+ETRFPLNMNVLSMGRVPQVM LDG+
Sbjct: 301 IRDESAEDIRIVLFPKNRSVDPDLLMESMFVLSDLETRFPLNMNVLSMGRVPQVMSLDGV 360

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKEWL HRREVL RRSSFRMQAIDRRVE+LKGL IAYLNIDEIIAIIRNEDKPK VM+SR
Sbjct: 361 LKEWLVHRREVLLRRSSFRMQAIDRRVEVLKGLSIAYLNIDEIIAIIRNEDKPKSVMISR 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSLTENQ DAILNLRLRSLRKLEEYQIKSELDNLL EK+ ++ LLNS K+QW+QIACEIR
Sbjct: 421 FSLTENQADAILNLRLRSLRKLEEYQIKSELDNLLLEKDNLNLLLNSEKKQWDQIACEIR 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKEIFSKSTDLGRRRT FCE  + DK  +QQAMIEKEP+TVVIS RGWIRSLK HS+DL
Sbjct: 481 EVKEIFSKSTDLGRRRTVFCEALKTDKVAVQQAMIEKEPVTVVISKRGWIRSLKGHSIDL 540

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           SAL+FKEGD LKIA HA+TT+RILL STDG+AYTLP GNLLSGRGHGEAIQLLID+NHNQ
Sbjct: 541 SALNFKEGDGLKIAFHAYTTERILLFSTDGRAYTLPVGNLLSGRGHGEAIQLLIDINHNQ 600

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           DI+ AFV D TCKLL VS+KGNAFIV+ES+II NTRKGK F KVSS + MKLVVKV GD+
Sbjct: 601 DIMAAFVQDPTCKLLFVSNKGNAFIVQESQIIPNTRKGKQFFKVSSGDSMKLVVKVIGDN 660

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLLIF IDQIPEM+RGKGVRLQSYKDGG+SDV+CF I EGLTW+DSAGRS+N
Sbjct: 661 VAVVGENRKLLIFPIDQIPEMNRGKGVRLQSYKDGGVSDVVCFNISEGLTWVDSAGRSFN 720

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           RS++DL+ WLGKRGG GSLVPKGFPRSG F
Sbjct: 721 RSKDDLIRWLGKRGGAGSLVPKGFPRSGNF 750


>gi|254446975|ref|ZP_05060442.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015]
 gi|198263114|gb|EDY87392.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015]
          Length = 867

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/791 (33%), Positives = 409/791 (51%), Gaps = 64/791 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  ++L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+  ++KK
Sbjct: 6   KEVFPINLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKSYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+ AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTMVRMAQDFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VDF D Y+  +SEP VFP++ P LL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKLAHEMLADIDKETVDFVDNYDGSESEPTVFPTRLPALLVNGGSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +ALID PE+ +  L+E+I GPDFPT G I+     I E+YR GRG   +RA
Sbjct: 186 NINEVIDGCVALIDEPELDVMGLMEHIPGPDFPTAG-IINGARGIREAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  VEE   G   IVVTEIPYQV K+RL+EKIAEL+  K+I  +  +RDES +D   ++ 
Sbjct: 245 RASVEEDKNGKPYIVVTEIPYQVNKARLLEKIAELVKEKKIEGITGLRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L     P++M L  +L+ ++AHRREV+ R
Sbjct: 305 ELRRGEVGEVILNNLYAQTQLQTVFGINMVALDK-GQPRLMNLKQVLEAFIAHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ + ++    R  IL+GL +A  NID IIA+I+    P                     
Sbjct: 364 RTLYELRKARERTHILEGLAVALSNIDPIIAMIKASTNPAEARQQLIDTVWEPGVVSGML 423

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+  Q  AIL+L+L  L  LE+ +I  E   LL +
Sbjct: 424 ERAGADATRPDTLEDGLGLLDDGYHLSPAQAQAILDLKLHRLTGLEQDKIVEEYGELLEK 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++ ++L +  +    +  E+ E+++ +        RRT   E+ +       + +I +
Sbjct: 484 IAELLNILRNPDRLTEVVRDELVELRDSYGDE-----RRT---EIYQNQSDLTVEDLINE 535

Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           + + V +S+ G+         ++ K      SA   K+ D ++    A T D +L  S+ 
Sbjct: 536 QDVVVTLSHAGYAKAQPLDDYKAQKRGGRGRSATKMKDEDFIEKLFVACTHDTLLCFSSY 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y      L   S    G+ I  L+ L   + I        +     + + ++ G   
Sbjct: 596 GKVYWKKVYELPIGSRNARGKPIVNLLPLEEGERISAVLPVREFTDDEFVFMATANGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               S        G   L +   +++  V +  G   + +  ++ K + F+   +  M R
Sbjct: 656 RTALSNFSRPRSNGIIALDIRDGDRLVGVARTDGQRDIMLFADSGKAIRFNEQDVRPMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     D     ++   I E    + +    Y +           RGG G L  K
Sbjct: 716 TAAGVRGIRLSDEQT--MVGLIIVEDGDILTATVNGYGKRTAIEDYPTQGRGGSGVLSIK 773

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 774 TSDRNGGVVGA 784


>gi|317048908|ref|YP_004116556.1| DNA gyrase subunit A [Pantoea sp. At-9b]
 gi|316950525|gb|ADU70000.1| DNA gyrase, A subunit [Pantoea sp. At-9b]
          Length = 879

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+    LA ID+  IS+E L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLREVINGCLAYIDDENISVEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I++ E+PYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARGEVEADAKSGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P++M L  IL+ +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKIMALKEILEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL I+  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEGLAISLANIDPIIELIRRAPTPAEAKAGLIAQS 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   R+ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S ++    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILASAERLMEVIREELEAMRDQFGDDRRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y     + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFNIFMATADGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                  E       G   + +  ++++  V    G D   +     K++ F+   +  M
Sbjct: 655 VKKTALQEFSRPRSAGIIAINLREDDELIGVALTNGSDETMLFSAAGKVVRFAEAAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +G     +     EG   +      Y +   +       R   G + 
Sbjct: 715 GRSASGVRGIKLAEGDKVVSLIVPREEGA-ILTVTQNGYGKRTANSEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGPVVGA 786



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 85/290 (29%), Gaps = 22/290 (7%)

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           +       R+   +    IL       L   ++  +       +   +      E     
Sbjct: 572 IKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI 631

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
              L +R   +         +       +K      S  +    IA  +RE  E+   + 
Sbjct: 632 TAILPVREYTEGFNI----FMATADGTVKKTALQEFSRPRSAGIIAINLREDDELIGVAL 687

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
             G                  + M+      VV      +R++   +  +  +   EGD 
Sbjct: 688 TNGS----------------DETMLFSAAGKVVRFAEAAVRAMGRSASGVRGIKLAEGDK 731

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           +   +       IL ++ +G           +     + +  +     N  +V A   D 
Sbjct: 732 VVSLIVPREEGAILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERNGPVVGAVQVDD 791

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
           + ++++++  G       SE+    R   G   ++ + +E +  + +V  
Sbjct: 792 SDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAE 841


>gi|120553949|ref|YP_958300.1| DNA gyrase, A subunit [Marinobacter aquaeolei VT8]
 gi|120323798|gb|ABM18113.1| DNA gyrase subunit A [Marinobacter aquaeolei VT8]
          Length = 856

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/786 (32%), Positives = 397/786 (50%), Gaps = 48/786 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+  A+
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +D++ VD+ D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMEKIAHSLLADLDKETVDYVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LALIDNP++++++L+E+I GPDFPT G I+  R  IVE+YR GRG   +
Sbjct: 184 PHNLTEVVNGCLALIDNPDLTVDELMEFIPGPDFPTQG-IINGRAGIVEAYRTGRGRIYI 242

Query: 253 RARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR  + ++   G   I++TE+PYQ+ K+RLIEKIAEL+  KR+  + ++RDES ++   
Sbjct: 243 RARHEIEQDKKTGRESIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  +PD+++ ++F  + +ET F +NM  L     P+ + L  +L  ++ HRREV
Sbjct: 303 VVIELRRGENPDVIINNLFAQTQLETVFGINMVALI-NGEPKTLNLKEMLDAFVRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------- 422
           + RR+ + ++    R  IL+GL +A  NIDEII +I+                       
Sbjct: 362 VTRRTIYELRKARERGHILEGLTVALANIDEIIELIKRSPSAAEAKEKLMDKGWAPGDVL 421

Query: 423 ----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                       L+  Q  AIL+LRL  L  LE  ++++E   +
Sbjct: 422 AMLERAGEDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEI 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L +   +  +L   ++    I  E+ E+   +          +                +
Sbjct: 482 LEKIADLLDILGDPERLMQVIRDELAEIVSQYGDERRTEITSSRRDLTIADLIDEEDLVV 541

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
                           ++ +      +A   K+ D ++  L A++ D IL  S  GK Y 
Sbjct: 542 TISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFIEKLLVANSHDTILCFSNKGKVYW 601

Query: 575 LPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEES 629
           L    +        G  +  ++ L+  + I T      Y     +L+ +S G        
Sbjct: 602 LRVFEIPRGSRGSRGRPMVNILPLDEGERITTFLPVRDYPEDQFVLMATSAGVVKKTPLP 661

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
                   G   L +   + +       G   V +     K + F  +Q+  MSR  +GV
Sbjct: 662 NFSRPRSSGLIALNLDEGDTLIGAAITDGSAEVMLFSSAGKAVRFQEEQVRPMSRTARGV 721

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R     +G    V      EG   + ++   Y +           RG  G +  +   R+
Sbjct: 722 RGIKMPEGHHV-VSLIIPQEGGVILTASEHGYGKRTAIDEFPAYSRGSQGVIAMQCSERN 780

Query: 748 GKFLSS 753
           G  +++
Sbjct: 781 GNLVTA 786



 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 6/149 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++L S+ GKA       +         ++  I +     +V+  +      +L  S  G 
Sbjct: 694 VMLFSSAGKAVRFQEEQVRPMSRTARGVRG-IKMPEGHHVVSLIIPQEGGVILTASEHGY 752

Query: 623 AFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                  E  A +R   G   ++ S      +  +    GD + ++ +   L+    D++
Sbjct: 753 GKRTAIDEFPAYSRGSQGVIAMQCSERNGNLVTALQLFDGDQMMLISDKGTLVRTRTDEV 812

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             +SR  +GVRL          V   +I 
Sbjct: 813 SVLSRNTQGVRLIRLAQEDERLVGVERIA 841


>gi|296136328|ref|YP_003643570.1| DNA gyrase, A subunit [Thiomonas intermedia K12]
 gi|295796450|gb|ADG31240.1| DNA gyrase, A subunit [Thiomonas intermedia K12]
          Length = 868

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/782 (29%), Positives = 382/782 (48%), Gaps = 49/782 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+   +   +KKSARI
Sbjct: 10  PISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+ NP  +IE+L+E +  PDFPT G I+     + ++YR GRG   +RAR   
Sbjct: 190 VLDACLHLLRNPGATIEELMERVPAPDFPTAG-IIYGTSGVRDAYRTGRGRVVMRARCHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    I+V E+PYQV K  L+E+IAEL+  K+I  +  I+DES +    V+    
Sbjct: 249 EDLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  ++  +L+HRRE++ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKQTQLQDTFGVNMVALVD-GQPRLLNLQQMIAAFLSHRREIITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------------- 416
           F ++    R  +L+GL +A  N+D +I +I+    P                        
Sbjct: 368 FDLRKARERGHVLEGLAVALANVDRMIELIKAAPTPPVAKERLLAQAWEPGEARAMLSRV 427

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q   IL +RL+ L  LE+ +I SE  +++ + 
Sbjct: 428 EGDITQFQPDDLDARYGLKPDGYYLSETQAQEILQMRLQRLTGLEQDKIVSEYKDVMEQI 487

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  ++  F  +         +              +    
Sbjct: 488 ADLLDILAKPERMTEIITTEMSALRAEFGDARRSHIEVNAYDIDVEDLITPQDLVVTISH 547

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ +       A   KE D ++    A+T D +L  S  G+ Y +   
Sbjct: 548 SGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRGRVYWMKVY 607

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
                     G+ +  L  L   + I T      +D    + + +++G       +    
Sbjct: 608 ESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFDEQHYVFMATARGTVKKTPLTAFAN 667

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
               G   + +  ++ +       G H V +  +  K + F    +  M R  +GVR   
Sbjct: 668 RRTAGIIAVGLDDDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPMGREARGVRGMQ 727

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +       +     E  + + +    + +  +        RG  G +  +   R+GK +
Sbjct: 728 LEADQSVIALLVAEDETQSVLTATENGFGKRTSITEYTRHGRGTKGMIAIQTSERNGKVV 787

Query: 752 SS 753
           ++
Sbjct: 788 AA 789



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 66/185 (35%), Gaps = 8/185 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  + A+   + D L  A        ++L S  GKA      ++         ++ +
Sbjct: 667 NRRTAGIIAVGLDDDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPMGREARGVRGM 726

Query: 594 IDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEE 648
             L  +Q ++   V  D T  +L  +  G       +E   + R  K  + +     + +
Sbjct: 727 -QLEADQSVIALLVAEDETQSVLTATENGFGKRTSITEYTRHGRGTKGMIAIQTSERNGK 785

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK-DGGISDVICFKIC 706
            +   +  T D + ++ +   L+   +++I EM R  +GV L +      +  V      
Sbjct: 786 VVAACLVRTSDEIMLITDTGVLVRTRVEEIREMGRATQGVTLIALDAKAHLIQVQPVVEA 845

Query: 707 EGLTW 711
           +    
Sbjct: 846 DDDEL 850


>gi|238026529|ref|YP_002910760.1| DNA gyrase subunit A [Burkholderia glumae BGR1]
 gi|37514955|dbj|BAC98434.1| GyrA protein [Burkholderia glumae]
 gi|237875723|gb|ACR28056.1| GyrA protein [Burkholderia glumae BGR1]
          Length = 869

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/789 (30%), Positives = 382/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE ++++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACHHLLANPEATVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L  +LAHRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDTFGMNMVALVD-GQPKLLNLKEMLVCFLAHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE I II+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       +++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSADKYVFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G+H V +  ++ K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  + + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+G+ +++
Sbjct: 788 ERNGRVVAA 796



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 738 GQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|114331560|ref|YP_747782.1| DNA gyrase subunit A [Nitrosomonas eutropha C91]
 gi|114308574|gb|ABI59817.1| DNA gyrase subunit A [Nitrosomonas eutropha C91]
          Length = 848

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/782 (31%), Positives = 389/782 (49%), Gaps = 49/782 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PVSLEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG+IDGD+AAA RYTE RM++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMSR 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATNIPPHNISE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+ +P+I I  L+  I  PDFPT G I+     I + Y+ GRG   +RAR   
Sbjct: 190 VIDACLLLLSDPDIDIAGLMACIPAPDFPTAG-IIYGISGIKDGYQTGRGRVIMRARTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ +G+   I++ E+PYQV K+ L+ +I EL+  KRI  + D+RDES +    V+    
Sbjct: 249 EELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + M+  F +NM  L     P+++ L  +L  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVILNNLYKETQMQDTFGINMVALVD-GQPRLLNLKQMLDYFLRHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------------- 415
           F ++    R  +L+GL +A  N+DEIIA+I+    P                        
Sbjct: 368 FELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKRGLMARTWRSSLVEEMLRRA 427

Query: 416 -----------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                            +    + L++ Q  AIL+LRL+ L  LE+ +I SE   +L + 
Sbjct: 428 MIDAAAFRPETLATGFGMSNQEYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYKEILDKI 487

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             + ++L + ++    I  E+  +K  F                +          +    
Sbjct: 488 RDLLNMLANSERITAIIIEELTAIKGQFGDPRRSEVVIDAQDLSTEDLITPTDMVVTLSH 547

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              +        ++ K       A+  +E D +     A+T D IL  S+ G+ Y +   
Sbjct: 548 AGYIKSQLLDDYQAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLGRVYWIKVY 607

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
           N+        G  I  L+ L  ++ I        +D T  + + ++ G       SE   
Sbjct: 608 NVPQGSRTSRGRPINNLVPLEQHEKINAVLPVKSFDDTRYVFMATAGGTVKKTPLSEFSR 667

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
               G   + +   + +  V    G H V +  +  K + F  + +    R  +GVR   
Sbjct: 668 PRTNGIIAVALDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRPTGRNARGVRGMK 727

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                    +     E +T + +    Y +  +        RG  G +      R+GK +
Sbjct: 728 LGAEQKVISLLVADSENMTVLTATENGYGKRTSITEYTRHNRGTQGMIAINTNKRNGKVV 787

Query: 752 SS 753
           ++
Sbjct: 788 AA 789



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 7/169 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  +  + A+   EGD L           ++L S  GKA      ++     +   ++ +
Sbjct: 667 RPRTNGIIAVALDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRPTGRNARGVRGM 726

Query: 594 IDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEK 649
             L   Q +++  V D     +L  +  G       +E   + R   G   +  +    K
Sbjct: 727 -KLGAEQKVISLLVADSENMTVLTATENGYGKRTSITEYTRHNRGTQGMIAINTNKRNGK 785

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
           +     V   D + ++     ++   + +I EM R  +GV L +   G 
Sbjct: 786 VVAAQLVEPNDEIMLITTGGVMIRTRVSEIREMGRATQGVILINLDAGE 834



 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 3/105 (2%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               +L  + +G                 + +  +     N  +V A + +   ++++++
Sbjct: 743 ENMTVLTATENGYGKRTSITEYTRHNRGTQGMIAINTNKRNGKVVAAQLVEPNDEIMLIT 802

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLV-VKVTGDH 660
           + G       SEI    R   G   + + + EK+  +   V  D 
Sbjct: 803 TGGVMIRTRVSEIREMGRATQGVILINLDAGEKLAGLERIVETDE 847


>gi|322417550|ref|YP_004196773.1| DNA gyrase subunit A [Geobacter sp. M18]
 gi|320123937|gb|ADW11497.1| DNA gyrase, A subunit [Geobacter sp. M18]
          Length = 837

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/746 (33%), Positives = 393/746 (52%), Gaps = 14/746 (1%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            +V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR + AM +M  D+   +KKSAR
Sbjct: 8   VSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSAR 67

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTE RM 
Sbjct: 68  VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRME 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           Q+A  +L  ++++ V +   Y++   EP+V PSKFPNLL NG++GIAVGMAT+IP HN+ 
Sbjct: 128 QLAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLS 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +  +A+I+NP+++ E+L+E I GPDFPTGG  +  RE I+++Y  GRG  ++RA+  
Sbjct: 188 EVIDGIVAIIENPQLTFEELVEMIPGPDFPTGG-FIYGREGIMKAYSTGRGIIQMRAKVQ 246

Query: 258 VE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           +E +       IVVTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES  +   V+   
Sbjct: 247 IETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  +P +L+  ++  + M++ F + M  +   R P+V+ L   +  ++ HR+E++ RR+
Sbjct: 307 KKDENPTILLNHLYKQTQMQSSFGIIMLAIVHNR-PRVLTLRETIDFFIEHRKEIVTRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  N+DE+IA+I+    P       + RF L++ Q  AIL+
Sbjct: 366 IFDLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKTGLMERFGLSDLQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +I  EL  +L    ++  +L S  +    I  E+ E+K+ F       
Sbjct: 426 MRLHRLTGLERDKIMEELREILKYIARLKEILASEAEILKIIVGELIELKDKFGDKRRSE 485

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
               T               +       +  +     R+ +      + +  KE D ++ 
Sbjct: 486 IVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTGMKTKEEDFVEQ 545

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS- 610
              A T D ++  +  GK Y L    +        G+AI  L++L  N+ I         
Sbjct: 546 LFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGKAIVNLLNLAANEKITAILPVKEF 605

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGEN 667
                +++ +  G        E       G   + +   +K+  V    G   V +   N
Sbjct: 606 VDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLDEGDKLISVALTDGKQDVLLATAN 665

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSEND 725
            K + F  D +  + R  +GVR  + +D  +  +          T        Y +    
Sbjct: 666 GKAIRFKEDDVRTVGRVSRGVRGMALEDDVVIGMAILNEHFTDSTIFTVTENGYGKRTEI 725

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFL 751
                  RGG G +  K   R+G+ +
Sbjct: 726 SEYRTQSRGGKGVITIKTTERNGQVV 751



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 71/194 (36%), Gaps = 7/194 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+     +         + A++  EGD L           +LL + +GKA      ++ +
Sbjct: 619 VVKKTNMMEYSHPRVGGIIAVNLDEGDKLISVALTDGKQDVLLATANGKAIRFKEDDVRT 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                  ++ +   +     +     + +   +  V+  G     E SE    +R GK  
Sbjct: 679 VGRVSRGVRGMALEDDVVIGMAILNEHFTDSTIFTVTENGYGKRTEISEYRTQSRGGKGV 738

Query: 642 LKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           + + + E+   +  + +V  D  + ++ +  K+L   +     + R  +GVRL   K+  
Sbjct: 739 ITIKTTERNGQVVDIKQVNDDNDLMLITDQGKILRVQVSGFSIIGRNTQGVRLM-VKEEN 797

Query: 697 ISDVICFKICEGLT 710
              V   ++ E   
Sbjct: 798 ERVVAVARLAEKEE 811


>gi|149774749|gb|ABR28421.1| DNA gyrase A subunit [Delftia tsuruhatensis]
          Length = 888

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/808 (30%), Positives = 402/808 (49%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VD+   Y+  + EP+V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+  P+ +I++L+E I  PDFPT G I+     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLLQTPQATIDELMEIIPAPDFPTAG-IIYGINGVKEGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++ L+ ++  F +NM  L     P++  L  +++ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVD-GQPKLCNLKDLVEVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------------ 411
           EV+ RR+ + ++    R  +L+GL +A  NID+ IAIIRN                    
Sbjct: 360 EVVTRRTVYELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRNWDSKL 419

Query: 412 ---------------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                      +        + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRTDGGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  ++++  E +  +L+  ++    I  E++++K  F +S    RR T       
Sbjct: 480 DKIVAEYKDVMSVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSKVGARRSTVE----Y 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+         RS K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D +L  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 596 ANTHDYLLCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGEYRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADHYVFMSTSMGTVKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  M R  +GV+  + ++G     +     E  + + +    Y +  + 
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVKGMTLEEGQSVIAMLVAEDESQSVLTATENGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      RG  G +  +   R+GK +++
Sbjct: 776 VEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 77/262 (29%), Gaps = 14/262 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G +   
Sbjct: 595 IANTHDYLLCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMF---------PLQDGEKINV 645

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++   ++      +        +               + A+   EGD L  A    
Sbjct: 646 VLPLTGEYRSFPADHYVFMSTSMGTVKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTD 705

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               ++L S  GKA      ++     +   ++ +        I      D +  +L  +
Sbjct: 706 GKHDVMLFSDGGKAVRFDENDVRPMGRNARGVKGMTLEEGQSVIAMLVAEDESQSVLTAT 765

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFS 674
             G        E   + R  K  + +   E+   VV  T     D + ++ +   L+   
Sbjct: 766 ENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRTR 825

Query: 675 IDQIPEMSRG-KGVRLQSYKDG 695
           + +I E+ R  +GV L S  +G
Sbjct: 826 VSEIRELGRATQGVTLISLDEG 847



 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 36/104 (34%), Gaps = 2/104 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
            +  +L  + +G                 + +  +     N  +V A +  +  ++++++
Sbjct: 757 ESQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLIT 816

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
             G       SEI    R   G T + +    K+  + ++  + 
Sbjct: 817 DTGVLVRTRVSEIRELGRATQGVTLISLDEGAKLGGLQRIVEND 860


>gi|162421768|ref|YP_001605843.1| DNA gyrase subunit A [Yersinia pestis Angola]
 gi|162354583|gb|ABX88531.1| DNA gyrase, A subunit [Yersinia pestis Angola]
          Length = 885

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L +  +    I  E+  +KE ++          T         
Sbjct: 475 LDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+  C + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGCHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVAEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|330685301|gb|EGG96962.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU121]
          Length = 892

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 405/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDISISELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDIRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +        +  RF L+E 
Sbjct: 361 TVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LLA  ++++++L   +     +  E+ E+KE +
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLAYIDELEAILADEEVLLQLVRDELTEIKERY 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + KG       S      + GK  +    ++++  
Sbjct: 594 ENDESISTMIAVKDLESEDDYLVFATRKGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
           V    G+   ++   +  L+ FS   +  + R   GV+  + ++G  +  +         
Sbjct: 654 VRLTDGEEDILIGTAHASLIRFSEKALRPLGRTAAGVKGITLREGDEVVGLDVAHANSED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERNGNIV 755



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 7/128 (5%)

Query: 589 AIQLLIDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L    ++V       +S  ++LVV+  G       ++   + R GK      +
Sbjct: 688 AGVKGITLREGDEVVGLDVAHANSEDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
              +   + +      + + VV     ++   +  I +  R  +GVRL    D      +
Sbjct: 748 TERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTV 807

Query: 702 CFKICEGL 709
                E  
Sbjct: 808 AKVKQEDD 815



 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 2/109 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N +IV          L+
Sbjct: 708 HANSEDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
           VV++ G    ++  +I  N R   G   +++  ++ +  V KV  +  A
Sbjct: 768 VVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVAKVKQEDDA 816


>gi|227328225|ref|ZP_03832249.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 879

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/793 (33%), Positives = 395/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  IS+E L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKIYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++T F +NM  L     P++MPL  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSQTQLQTSFGINMVAL-HQGQPKIMPLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   R+ LTE Q  AIL+LRL+ L  +E  ++
Sbjct: 415 WELGSVATMLERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LLAE  ++  +LNS ++    I  E+  +K  +S          T         
Sbjct: 475 LDEYKELLAEIAELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G D   +     K++ FS   +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  + +       +     EG   +      + +           R   G + 
Sbjct: 715 GRTATGVRGINLQGEDRVVSLIIPRGEGD-ILTVTQNGFGKRTAVSEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|311694251|gb|ADP97124.1| DNA gyrase subunit A-like protein [marine bacterium HP15]
          Length = 873

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/786 (32%), Positives = 394/786 (50%), Gaps = 48/786 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  A+
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMEKIAHSLLADLDKETVDFVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LALIDNP+++I++L+E+I GPDFPT G I+  R  IVE+YR GRG   +
Sbjct: 184 PHNLTEVVNGCLALIDNPDLTIDELMEFIPGPDFPTEG-IINGRAGIVEAYRTGRGRIYI 242

Query: 253 RARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR  +  +       I++TE+PYQ+ K+RLIEKIAEL+  KR+  + ++RDES ++   
Sbjct: 243 RARHEIEHDNKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  +PD+++ ++F  + +ET F +NM  L     P+ + L  +L  ++ HRREV
Sbjct: 303 VVIELRRGENPDVVVNNLFAQTQLETVFGINMVGLI-NGEPKTLNLKQLLDAFVRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419
           + RR+ + ++    R  IL+GL +A  NIDEII +I+                       
Sbjct: 362 VTRRTIYELRKARERGHILEGLTVALANIDEIIELIKASPSAAEAKEKLIAKGWSPGDVM 421

Query: 420 -------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+  Q  AIL+LRL  L  LE  ++++E   +
Sbjct: 422 AMLERAGQDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEI 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L +   +  +L   ++    I  E+  +   F          +                +
Sbjct: 482 LDKIADLLDILGDPERLLQVIREELEAIVTEFGDERRTEITSSRRDLTIADLIDEEDLVV 541

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
                           ++ +      +A   K+ D ++  L A++ D IL  S  GK Y 
Sbjct: 542 TISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYW 601

Query: 575 LPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEES 629
           L    +        G  +  ++ L+  + I T      Y     +L+ +S G        
Sbjct: 602 LRVFEIPRASRASRGRPMVNILPLDEGERITTFLPVRDYPEDQFVLMATSAGVVKKTPLP 661

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
                   G   L +   + +       GD  V +     K + F+ + +  MSR  +GV
Sbjct: 662 NFSRPRSSGLIALSLDEGDTLIGAAITKGDAEVMLFSTAGKAVRFNEEAVRPMSRTARGV 721

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      G    V      +G   + ++   Y +           RG  G +  +   R+
Sbjct: 722 RGIKMPQGHHV-VSLIIPQDGGVILTASENGYGKRTAIDEFPTYSRGSQGVIAMQCSERN 780

Query: 748 GKFLSS 753
           G  +++
Sbjct: 781 GNLVTA 786



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 59/377 (15%), Positives = 114/377 (30%), Gaps = 22/377 (5%)

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
                E     +S R       +   + L++   +          + + +       + T
Sbjct: 511 TEFGDERRTEITSSRRDLTIADLIDEEDLVVTISHSGYAKTQAVEDYQAQRRGGRGKAAT 570

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             + +  +   L  +    +  +       +      +    S   +   +   +     
Sbjct: 571 SMKDEDFVEKLL--VANSHDTILCFSNRGKVYWLRVFEIPRASRASRGRPMVNIL----- 623

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
                 D G R TTF  V    +      ++      V  +        +  S  L AL 
Sbjct: 624 ----PLDEGERITTFLPVRDYPEDQFV--LMATSAGVVKKTPLPNFSRPR--SSGLIALS 675

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
             EGD+L  A        ++L ST GKA       +         ++  I +     +V+
Sbjct: 676 LDEGDTLIGAAITKGDAEVMLFSTAGKAVRFNEEAVRPMSRTARGVRG-IKMPQGHHVVS 734

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDH 660
             +      +L  S  G        E    +R   G   ++ S      +  +    GD 
Sbjct: 735 LIIPQDGGVILTASENGYGKRTAIDEFPTYSRGSQGVIAMQCSERNGNLVTALQLFDGDE 794

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRS 718
           + ++ +   L+    D++  +SR  +GVRL          V   +I E     +DS G  
Sbjct: 795 MMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERIAETDDEELDSEGNP 854

Query: 719 YNRSENDLLGWLGKRGG 735
               E+   G  G+  G
Sbjct: 855 IVADESPEEGQEGESAG 871


>gi|239637291|ref|ZP_04678278.1| DNA gyrase, A subunit [Staphylococcus warneri L37603]
 gi|239597128|gb|EEQ79638.1| DNA gyrase, A subunit [Staphylococcus warneri L37603]
          Length = 892

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 405/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDISISELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDIRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +        +  RF L+E 
Sbjct: 361 TVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LLA  ++++++L   +     +  E+ E+KE +
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLAYIDELEAILADEEVLLQLVRDELTEIKERY 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + KG       S      + GK  +    ++++  
Sbjct: 594 ENDESISTMIAVKDLESEDDYLVFATRKGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
           V    G+   ++   +  L+ FS   +  + R   GV+  + ++G  +  +         
Sbjct: 654 VRLTDGEEDILIGTAHASLIRFSEKALRPLGRTAAGVKGITLREGDEVVGLDVAHANSED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERNGNIV 755



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 7/128 (5%)

Query: 589 AIQLLIDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L    ++V       +S  ++LVV+  G       ++   + R GK      +
Sbjct: 688 AGVKGITLREGDEVVGLDVAHANSEDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
              +   + +      + + VV     ++   +  I +  R  +GVRL    D      +
Sbjct: 748 TERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTV 807

Query: 702 CFKICEGL 709
                E  
Sbjct: 808 AKVKQEDD 815



 Score = 44.0 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 2/109 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N +IV          L+
Sbjct: 708 HANSEDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
           VV++ G    ++  +I  N R   G   +++  ++ +  V KV  +  A
Sbjct: 768 VVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVAKVKQEDDA 816


>gi|186894663|ref|YP_001871775.1| DNA gyrase subunit A [Yersinia pseudotuberculosis PB1/+]
 gi|186697689|gb|ACC88318.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 891

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 390/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L +  +    I  E+  +KE ++          T         
Sbjct: 475 LDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVAEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|51595600|ref|YP_069791.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953]
 gi|51588882|emb|CAH20496.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953]
          Length = 897

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 390/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L +  +    I  E+  +KE ++          T         
Sbjct: 475 LDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVAEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|153949955|ref|YP_001401731.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 31758]
 gi|152961450|gb|ABS48911.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis IP 31758]
          Length = 897

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 390/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L +  +    I  E+  +KE ++          T         
Sbjct: 475 LDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVAEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|160900151|ref|YP_001565733.1| DNA gyrase subunit A [Delftia acidovorans SPH-1]
 gi|151500324|gb|ABS12103.1| DNA gyrase A subunit [Delftia acidovorans]
 gi|160365735|gb|ABX37348.1| DNA gyrase, A subunit [Delftia acidovorans SPH-1]
          Length = 888

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/808 (30%), Positives = 402/808 (49%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+++++  +L  +D++ VD+   Y+  + EP+V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRLSKISHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+  P+ +I++L+E I  PDFPT G I+     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLLQTPQATIDELMEIIPAPDFPTAG-IIYGINGVKEGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++ L+ ++  F +NM  L     P++  L  +++ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVD-GQPKLCNLKDLVEVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------------ 411
           EV+ RR+ + ++    R  +L+GL +A  NID+ IAIIRN                    
Sbjct: 360 EVVTRRTVYELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRNWDSKL 419

Query: 412 ---------------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                      +        + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRTDGGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  ++++  E +  +L+  ++    I  E++++K  F +S    RR T       
Sbjct: 480 DKIVAEYKDVMSVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSKVGARRSTVE----Y 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+         RS K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D +L  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 596 ANTHDYLLCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGEYRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADHYVFMSTSMGTVKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  M R  +GV+  + ++G     +     E  + + +    Y +  + 
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVKGMNLEEGQSVIAMLVAEDESQSVLTATENGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      RG  G +  +   R+GK +++
Sbjct: 776 VEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 7/213 (3%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
               G +      ++   ++      +        +               + A+   EG
Sbjct: 636 PLQDGEKINVVLPLTGEYRSFPADHYVFMSTSMGTVKKTALDEFSNPRKAGIIAVGLDEG 695

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L  A        ++L S  GKA      ++     +   +   ++L   Q ++   V 
Sbjct: 696 DFLIGAALTDGKHDVMLFSDGGKAVRFDENDVRPMGRNARGV-KGMNLEEGQSVIAMLVA 754

Query: 609 -DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAV 663
            D +  +L  +  G        E   + R  K  + +   E+   VV  T     D + +
Sbjct: 755 EDESQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIML 814

Query: 664 VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           + +   L+   + +I E+ R  +GV L S  +G
Sbjct: 815 ITDTGVLVRTRVSEIRELGRATQGVTLISLDEG 847



 Score = 39.8 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 36/104 (34%), Gaps = 2/104 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
            +  +L  + +G                 + +  +     N  +V A +  +  ++++++
Sbjct: 757 ESQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLIT 816

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
             G       SEI    R   G T + +    K+  + ++  + 
Sbjct: 817 DTGVLVRTRVSEIRELGRATQGVTLISLDEGAKLGGLQRIVEND 860


>gi|170025070|ref|YP_001721575.1| DNA gyrase subunit A [Yersinia pseudotuberculosis YPIII]
 gi|169751604|gb|ACA69122.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis YPIII]
          Length = 897

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L +  +    I  E+  +KE ++          T         
Sbjct: 475 LDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+  C + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGCHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVAEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|22126849|ref|NP_670272.1| DNA gyrase subunit A [Yersinia pestis KIM 10]
 gi|45440760|ref|NP_992299.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001]
 gi|108806927|ref|YP_650843.1| DNA gyrase subunit A [Yersinia pestis Antiqua]
 gi|108812921|ref|YP_648688.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|145599746|ref|YP_001163822.1| DNA gyrase subunit A [Yersinia pestis Pestoides F]
 gi|149366793|ref|ZP_01888827.1| DNA gyrase subunit A [Yersinia pestis CA88-4125]
 gi|165924567|ref|ZP_02220399.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938316|ref|ZP_02226874.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009847|ref|ZP_02230745.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211545|ref|ZP_02237580.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400296|ref|ZP_02305809.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419713|ref|ZP_02311466.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424281|ref|ZP_02316034.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218928375|ref|YP_002346250.1| DNA gyrase subunit A [Yersinia pestis CO92]
 gi|229841160|ref|ZP_04461319.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843265|ref|ZP_04463411.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229894119|ref|ZP_04509305.1| DNA gyrase subunit A [Yersinia pestis Pestoides A]
 gi|229903351|ref|ZP_04518464.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|270487161|ref|ZP_06204235.1| DNA gyrase, A subunit [Yersinia pestis KIM D27]
 gi|294503230|ref|YP_003567292.1| DNA gyrase subunit A [Yersinia pestis Z176003]
 gi|21959880|gb|AAM86523.1|AE013898_6 DNA gyrase, subunit A, type II topoisomerase [Yersinia pestis KIM
           10]
 gi|45435618|gb|AAS61176.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001]
 gi|108776569|gb|ABG19088.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|108778840|gb|ABG12898.1| DNA gyrase subunit A [Yersinia pestis Antiqua]
 gi|115346986|emb|CAL19877.1| DNA gyrase subunit A [Yersinia pestis CO92]
 gi|145211442|gb|ABP40849.1| DNA gyrase subunit A [Yersinia pestis Pestoides F]
 gi|149291167|gb|EDM41242.1| DNA gyrase subunit A [Yersinia pestis CA88-4125]
 gi|165913694|gb|EDR32313.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923627|gb|EDR40759.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991243|gb|EDR43544.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207316|gb|EDR51796.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962454|gb|EDR58475.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050245|gb|EDR61653.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057130|gb|EDR66893.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679121|gb|EEO75224.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|229689612|gb|EEO81673.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697526|gb|EEO87573.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229704004|gb|EEO91017.1| DNA gyrase subunit A [Yersinia pestis Pestoides A]
 gi|262361269|gb|ACY57990.1| DNA gyrase subunit A [Yersinia pestis D106004]
 gi|262365194|gb|ACY61751.1| DNA gyrase subunit A [Yersinia pestis D182038]
 gi|270335665|gb|EFA46442.1| DNA gyrase, A subunit [Yersinia pestis KIM D27]
 gi|294353689|gb|ADE64030.1| DNA gyrase subunit A [Yersinia pestis Z176003]
 gi|320015942|gb|ADV99513.1| DNA gyrase subunit A [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 891

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L +  +    I  E+  +KE ++          T         
Sbjct: 475 LDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+  C + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGCHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVAEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|146295091|ref|YP_001178862.1| DNA gyrase, A subunit [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145408667|gb|ABP65671.1| DNA gyrase subunit A [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 809

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/753 (33%), Positives = 413/753 (54%), Gaps = 27/753 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+DN    ++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   IVVTE+PY V K+RLIEKIAEL+  KRI  + DIRDES ++   ++  
Sbjct: 246 ATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L     P+V+ L  +L  ++ H+++V+ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVD-NQPKVLTLLDMLNYYIEHQKDVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+             RF  TE Q  AIL
Sbjct: 365 TKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLIKRFGFTEVQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  LL   E   ++L +       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELLKMIEYYKNVLANEAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT         +   ++ +I+++   + +++ G+I+          K     ++ + 
Sbjct: 482 --RRTKII--QDEQEDFEEEELIQEQDTVITLTHFGYIKRLPLDTYKSQKRGGKGITGIS 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
            +E D ++      T   IL  +  GKAY L A  +       +  AI  LI +  ++ I
Sbjct: 538 TREEDFVEEVFVTTTHHYILFFTDKGKAYRLRAYEVPEASRQAKGTAIVNLIQIGKDEKI 597

Query: 603 VTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                        L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D
Sbjct: 598 TACMTVKDFKEGFLMMCTKNGTIKKVLLSEFENTTKAGKKAITLAEDDCLIDVKLTSGND 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V      ++F+ + +  M R  +GV+  + +DG    V   K  +G   +      
Sbjct: 658 EMVLVSSGGYCVVFNENDVRVMGRSAQGVKGMTLEDGDFV-VGMEKASDGKYLLCVTENG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + +  +       KRG  G L  K   ++G+ +
Sbjct: 717 FGKRSDIEEYRKTKRGAKGVLTYKVTEKTGRIV 749



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 53/175 (30%), Gaps = 6/175 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              A+   E D L         D ++L+S+ G        ++       + +   + L  
Sbjct: 635 GKKAITLAEDDCLIDVKLTSGNDEMVLVSSGGYCVVFNENDVRVMGRSAQGV-KGMTLED 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVK 655
              +V          LL V+  G     +  E     R  K  L     E   ++  +  
Sbjct: 694 GDFVVGMEKASDGKYLLCVTENGFGKRSDIEEYRKTKRGAKGVLTYKVTEKTGRIVDIKM 753

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           V   D + +       +   + Q+P   R  +GV+L       I      +I   
Sbjct: 754 VNDEDEIMLCSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDSDSIKVSSIARIKAE 808


>gi|134095749|ref|YP_001100824.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
 gi|133739652|emb|CAL62703.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
          Length = 871

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/807 (29%), Positives = 393/807 (48%), Gaps = 70/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               +    +SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM EM   +  
Sbjct: 2   DQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F K AR+VGE +GK HPHGD S+YD+LVR+AQPF  RY L+ GQGNFG+IDGD+AAA R
Sbjct: 62  PFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTECRLDKIAGELLADLDKETVDFVPNYDGKEREPSVLPTRIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ + AL ++ N E +I++L+E I  PDFPTGG I+     + + YR GRG  
Sbjct: 182 IPPHNITEVIDGALHVLRNAEATIDELIEIIPAPDFPTGG-IIYGVSGVRDGYRTGRGRV 240

Query: 251 RVRARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   EE        I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +  
Sbjct: 241 VMRAKTHFEEYGKENRSAIIVDELPYQVNKKSLLERIAELVRDKKLEGISDIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R+  P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L+HRR
Sbjct: 301 MRVVIELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVD-GQPKLLNLKQMLECFLSHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------- 412
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAII+                     
Sbjct: 360 EVVTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSV 419

Query: 413 ---------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L+++Q   IL +RL+ L  LE+ 
Sbjct: 420 VREMLARTGEEGVGGVNAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E   ++++   +  +L   ++    I  E+   K  +       RR +        
Sbjct: 480 KIVNEYKEVMSQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSSIEL----N 535

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I  + + V +S+ G+++S         K       A+  KE D +     A
Sbjct: 536 ATDLGTEDLITPQDMVVTLSHTGYMKSQPITEYRAQKRGGRGKQAMATKEDDWIDQLFIA 595

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------Y 608
           +T D IL  S  G+ Y L    +        G+ I  +  L   + I            +
Sbjct: 596 NTHDYILCFSNRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGENRTF 655

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
                + + +S G       S+     + G   + +   + +       G H V +  ++
Sbjct: 656 PEDRYIFMSTSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDS 715

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            K + F  + +  M R  +GVR  + ++G     +     E  + + +    + +     
Sbjct: 716 GKAVRFDENDVRPMGRTARGVRGMNLEEGQQVIALLVAENEQQSVLTATENGFGKRTPIT 775

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  +   R+GK +++
Sbjct: 776 EYTRHGRGTKGMIAIQTSERNGKVVAA 802



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 85/263 (32%), Gaps = 16/263 (6%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       +   +  +    S   +   I                 G + T 
Sbjct: 594 IANTHDYILCFSNRGRMYWLKVWEVPQGSRNSRGKPIVNMF---------PLQDGEKITV 644

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              VS  ++   +   I        +               + A+   +GD L  A    
Sbjct: 645 ILPVSGENRTFPEDRYIFMSTSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTD 704

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVV 617
               ++L S  GKA      ++         ++ + +L   Q ++   V ++  + +L  
Sbjct: 705 GKHDVMLFSDSGKAVRFDENDVRPMGRTARGVRGM-NLEEGQQVIALLVAENEQQSVLTA 763

Query: 618 SSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVT-GDHVAVVGENRKLLIF 673
           +  G       +E   + R  KG   ++ S    K+     V   D + ++     L+  
Sbjct: 764 TENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDAADEIMLITTGGVLIRT 823

Query: 674 SIDQIPEMSRG-KGVRLQSYKDG 695
            + +I EM R  +GV L + +DG
Sbjct: 824 RVAEIREMGRATQGVTLIAVEDG 846


>gi|227356091|ref|ZP_03840481.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906]
 gi|227163736|gb|EEI48648.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906]
          Length = 883

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/804 (32%), Positives = 411/804 (51%), Gaps = 67/804 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +S ++ +    +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ 
Sbjct: 1   MRDSGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNV 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DG
Sbjct: 61  LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM ++A  +L  ++++ VDF   Y+  ++ P V P++ PNLL NG+SGI
Sbjct: 121 DSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  LA +DN +I+IE+L+EYI GPDFPT   I+  R  I+++Y
Sbjct: 181 AVGMATNIPPHNLGEVIDGCLAYVDNEDITIEELMEYITGPDFPTAA-IINGRRGILDAY 239

Query: 244 RLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           R GRG   +RA+  +E +   G   I+VTEIPYQV K+RLIEKIAEL+  KRI  +  +R
Sbjct: 240 RTGRGKIYIRAQADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R    ++++  +F  + M+  F +NM  L     P+++ L  I+ 
Sbjct: 300 DESDKDGMRIVVEIKRDAVGEVVLNHLFSQTQMQVSFGINMVAL-HQGQPKLLNLKEIIA 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------- 415
            ++ HRREV+ RR+ F ++    R  IL+ L +A  NID +I +IR    P         
Sbjct: 359 AFIRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIA 418

Query: 416 -------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                          V   ++ LTE Q  AIL+LRL+ L  LE 
Sbjct: 419 QPWDLGSVSAMLERAGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEH 478

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            ++  E   LL +  ++  +L S ++  + I  E+  +K  ++       RRT   E + 
Sbjct: 479 EKLLDEYRELLLQIAELLHILRSPERLMDVIREELTAIKTQYNDP-----RRTEITENTA 533

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
                  + +I +E + V +S++G+          + +      SA   KE D +   L 
Sbjct: 534 D---INIEDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLV 590

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDST 611
           A+T D IL  S+ G+ Y +    L        G  I  L+ L  ++ I        Y+  
Sbjct: 591 ANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQDERITAILPVREYEEG 650

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKL 670
             + + ++ G        +       G   + ++  +++  V    G +   +   + K+
Sbjct: 651 KFVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKV 710

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           + F+ + +  M R   GVR     D      +     EG   +      Y +        
Sbjct: 711 VRFAEECVRPMGRTATGVRGMKLVDDDKVVSLIIPRGEGD-ILTVTENGYGKRTVQSEYP 769

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              R   G +  K   R+GK + +
Sbjct: 770 TKNRATQGVISIKVSERNGKVVGA 793



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S  + A++  +GD L        ++  +L S DGK        +         ++ +
Sbjct: 672 RPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVRFAEECVRPMGRTATGVRGM 731

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKM 650
             L  +  +V+  +      +L V+  G      +SE     R   G   +KVS    K+
Sbjct: 732 -KLVDDDKVVSLIIPRGEGDILTVTENGYGKRTVQSEYPTKNRATQGVISIKVSERNGKV 790

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
              ++V   D + ++     L+   + ++  + R  +GV L    +  +  
Sbjct: 791 VGAIQVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEDELVV 841


>gi|86148463|ref|ZP_01066753.1| DNA gyrase, subunit A [Vibrio sp. MED222]
 gi|85833760|gb|EAQ51928.1| DNA gyrase, subunit A [Vibrio sp. MED222]
          Length = 890

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/800 (33%), Positives = 414/800 (51%), Gaps = 67/800 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY+S+VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D+D VDF   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N +I+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R+R  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSRAEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  +  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYSQTQLQTTFGINMVALN-NGQPQLFNIKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDEII +I+N   P            
Sbjct: 355 DHRREVVTRRTIFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 DLGNVASMLERAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++I+        RRT   E++ A   
Sbjct: 475 DEYKALLEEIAELMHILASTERLMEVIREELEAVRDIYGDE-----RRT---EITAAVHD 526

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              + +I +E + V +SN G+          + +      SA   K+ D ++  L A+T 
Sbjct: 527 IDMEELIAQEDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTH 586

Query: 561 DRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
           D IL  ST GK Y L    L        G+ I  ++ L   + I        + +   + 
Sbjct: 587 DNILCFSTRGKTYRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIF 646

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + +  G        +       G   + +  ++ +  V    G+  + +  ++ K++ F+
Sbjct: 647 MATGDGTVKKTSLDQFANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFN 706

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            D++  M R   GVR     +      +     EG   +      Y +           R
Sbjct: 707 EDKVRPMGRTASGVRGMKLPEDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGR 765

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
              G +  K   R+G  + +
Sbjct: 766 ATQGVVSIKVSDRNGPVVGA 785


>gi|227114440|ref|ZP_03828096.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 879

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/793 (33%), Positives = 395/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  IS+E L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKIYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++T F +NM  L     P++MPL  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSQTQLQTSFGINMVAL-HQGQPKIMPLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKAALIAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   R+ LTE Q  AIL+LRL+ L  +E  ++
Sbjct: 415 WELGSVAAMLERAGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LLAE  ++  +LNS ++    I  E+  +K  +S          T         
Sbjct: 475 LDEYKALLAEIAELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G D   +     K++ FS   +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  + +       +     EG   +      + +           R   G + 
Sbjct: 715 GRTATGVRGINLQGEDRVVSLIIPRGEGD-ILTVTQNGFGKRTAVSEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|86357137|ref|YP_469029.1| DNA topoisomerase IV subunit A [Rhizobium etli CFN 42]
 gi|86281239|gb|ABC90302.1| DNA topoisomerase IV subunit A protein [Rhizobium etli CFN 42]
          Length = 751

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 482/739 (65%), Positives = 619/739 (83%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+
Sbjct: 13  DDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE
Sbjct: 73  KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++MT V+EL+L+G+D+DAVDFRDTY+E +SEPVV P  FPNLLANG+SGIAVGMATSIPS
Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPS 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVR
Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  E++GRG + I++TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+RIVL
Sbjct: 253 AKWQTEDLGRGGYQIIITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRIVL 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK+RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL 
Sbjct: 313 VPKSRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEWLDHRREVLQ 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS FR+ AID+R+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN
Sbjct: 373 RRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LRKLEE++I+ E D L  EK +I++LL S  +QW  +A EI EVK+ F+K+T++G
Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKSEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVG 492

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRT F E   AD+  +QQAMIEKEPITVVIS +GWIR+LK H  + + L FKEGD LK+
Sbjct: 493 RRRTQFAEAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHISETATLTFKEGDGLKV 552

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q ++TAFV+D T K
Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPTRK 612

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L+VS+ GN F+V E+E++ANTRKGK  + V+  E+ +L+V V+GDHVAVVGENRKLL+F
Sbjct: 613 QLIVSTAGNGFVVPEAELVANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVF 672

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + Q+PEMSRGKGVRLQ YKDGGISDV CF I +GL W DSAGR++ +++++L  WLG R
Sbjct: 673 PLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISDGLFWEDSAGRTFTKNKDELAEWLGDR 732

Query: 734 GGVGSLVPKGFPRSGKFLS 752
              G  VPKGFPRSGKF  
Sbjct: 733 ASAGRTVPKGFPRSGKFAG 751


>gi|256822117|ref|YP_003146080.1| DNA gyrase subunit A [Kangiella koreensis DSM 16069]
 gi|256795656|gb|ACV26312.1| DNA gyrase, A subunit [Kangiella koreensis DSM 16069]
          Length = 879

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/786 (33%), Positives = 408/786 (51%), Gaps = 48/786 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+
Sbjct: 4   LAKEILPINIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDYNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  ++++ VDF D Y+  +SEP V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMDKLAHQLLADLEKETVDFEDNYDGSESEPTVLPTRVPNLLINGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNP+I+I +L+EYI GPDFPT   I+  R  I+++Y  GRG   +
Sbjct: 184 PHNLTEVIDGCLALIDNPDITIPELMEYIKGPDFPTAA-IINGRAGIIDAYHTGRGKIYL 242

Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           R+R  VE +   G   IVVTE+PYQV K+RLIEKIAEL+  K+I  +  +RDES +D   
Sbjct: 243 RSRSHVETDEKSGKQSIVVTELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +   P++++ +++  S M+  F +NM  L     P++  L   +  ++ HRREV
Sbjct: 303 MVIELRKGEVPEVVLNNLYAQSQMQNVFGINMVALD-NNQPRLFNLKDAIDAFVTHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------- 415
           + RR+ F ++    +  +L+GL IA  NID II +I+    PK                 
Sbjct: 362 VTRRTIFELRKAREKAHVLEGLAIALANIDAIIELIKESPTPKEAKEGLMGRGWEPGQVS 421

Query: 416 ---------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L++ Q  AIL+LRL  L  LE  +I  E  +L
Sbjct: 422 TMLARAGTEACRPEELAAEFGFHDGFYKLSDAQAQAILDLRLHKLTGLEHDKILGEYKDL 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L   E++  +L S ++    I  E+ EV+E F          +                +
Sbjct: 482 LGLIEELLRILMSTERLLEVIREELEEVRENFGDERRSEILDSKLDLTIADLITEEDVVV 541

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
                  V        ++ +      SA   K+ D ++  L A T D IL  S+ GK Y 
Sbjct: 542 TLSHEGYVKYQALSEYKAQRRGGRGKSATKMKDEDFIEKLLVASTHDTILCFSSTGKVYW 601

Query: 575 LPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEES 629
           L    L +      G+ I  ++ L + + I        +     + + ++ G        
Sbjct: 602 LKVFELPNAGRGSRGKPIVNVLPLENGERINAILPIREFSEDKFVFMATANGTVKKTSLE 661

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
           +       G   L ++ ++++  VV+  G +H+ +  +  K++ F    +  M R  +GV
Sbjct: 662 QFSRPRSNGIIALTIADDDELIGVVETDGSNHIMMFSDAGKVIRFDEANVRGMGRTARGV 721

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R     +G     +     +G + + +    Y +        L  RGG G +  +   R+
Sbjct: 722 RGMKLPEGAKVIQMIVAEEDG-SVLTATENGYGKRTAMEDHPLRGRGGQGVISIQMSERN 780

Query: 748 GKFLSS 753
           G  +S+
Sbjct: 781 GAVVSA 786



 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 6/179 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +      +  +  S  + AL   + D L   +    ++ I++ S  GK       N+  
Sbjct: 654 TVKKTSLEQFSRPRSNGIIALTIADDDELIGVVETDGSNHIMMFSDAGKVIRFDEANVRG 713

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  ++ +  L     ++   V +    +L  +  G        +     R G+  +
Sbjct: 714 MGRTARGVRGM-KLPEGAKVIQMIVAEEDGSVLTATENGYGKRTAMEDHPLRGRGGQGVI 772

Query: 643 KV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
            +     +   +  V  + GD V ++ +   L+   +D I  M R  +GVRL    DG 
Sbjct: 773 SIQMSERNGAVVSAVPVIDGDEVMLISKGGTLIRTGVDDIRIMGRNTQGVRLIKLDDGE 831


>gi|123441724|ref|YP_001005708.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122088685|emb|CAL11487.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 885

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/793 (32%), Positives = 390/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  I+IE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASS 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVAAMLERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE ++          T         
Sbjct: 475 LDEYKELLTVIAELIFILENPERLMEVIREELVAIKEQYNDVRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|225181141|ref|ZP_03734587.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168110|gb|EEG76915.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 815

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/764 (31%), Positives = 403/764 (52%), Gaps = 31/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 +  + +   ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM E+G+    
Sbjct: 2   NFTHGKIMPMPIHDEVKNSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMYELGMWPDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             KKSAR+VGEV+GK HPHGD +VYD++VRLAQ F  RYPL+ G GNFG++DGD AAA R
Sbjct: 62  PHKKSARLVGEVLGKYHPHGDTAVYDAMVRLAQNFSSRYPLVDGHGNFGSVDGDRAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +L  + ++ +DFR  +++   EP V P++FPNLL NG++GIAVGMAT+
Sbjct: 122 YTEARMSKIATEMLSEIHKETIDFRPNFDDTLEEPEVLPARFPNLLLNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +A + +IDNPE    +++++I GPDFPTGG ++  RE I  +YR GRG  
Sbjct: 182 IPPHNLREVVDALVHMIDNPECEDTEIMQHITGPDFPTGG-LILGREGIRSAYRTGRGII 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RA+  +E +  G   IVVTE+PYQV K++ IEKIA+L+  K++  + D+RDES     
Sbjct: 241 KIRAKTQIERMENGKSRIVVTELPYQVNKAKTIEKIADLVREKKLEGITDLRDESDRTGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +  +L+  +F  + ++  F + M  L     PQV+ L  +L  +L H+++
Sbjct: 301 RIVIELKRETNAQVLLNQMFKFTQLQQTFGIIMLALV-NNKPQVLNLREMLGHYLEHQKD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+ F ++  + R  IL+GL IA  N+D +I +IR     +      +  F LT+ Q
Sbjct: 360 VITRRTRFDLRKAEERAHILEGLRIALKNLDAVIKLIRASKNTEEARTGLMENFGLTQIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +++ E   L+ +   +  +L + +  +  I  E+ E+++ + 
Sbjct: 420 AQAILDMRLQKLTGLERQKLEDEYLELIQKISYLKEILANERLVYQIIKDEMGEIRKKYG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT        +     + +I +E + V +++ G+I+          K     
Sbjct: 480 D-----DRRTAIV---IDEDDFAVEDLIAEEDMVVTLTHNGYIKRLPVTTYRVQKRGGRG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           ++ +  K  D ++    A T D +   +  GK Y      +        G AI  L+ + 
Sbjct: 532 ITGMSTKGDDFVEHVFVASTHDYLCCFTNRGKMYRKKVFEIPESGRTTRGVAIVNLLAVE 591

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +++   + + + +G        E I   + G   L ++  +++  V 
Sbjct: 592 PGEYVTAVIPVKDFNAGQFMFMCTRQGYVKKTPLEEFINARKGGLIALSLAENDELIDVR 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE---GL 709
              G   VA+V  +   + F+ + +  M R  +GVR  S   G     +     E     
Sbjct: 652 LTNGKYEVALVTYHGLSIRFAEENVRSMGRSARGVRGISLGPGDKVMSLEVLPPEMEQET 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + + +           RGG G    +   ++G  + +
Sbjct: 712 EMLVVTEKGFGKRTPFSEYRAQTRGGKGIYTIRILEKNGPVMGA 755



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 5/105 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKV-TGDHVAVV 664
           +   ++LVV+ KG       SE  A TR GK       +     +     V  GD V ++
Sbjct: 708 EQETEMLVVTEKGFGKRTPFSEYRAQTRGGKGIYTIRILEKNGPVMGAKMVRPGDEVMMI 767

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
                ++      I    R  +GV L    +G     +   + E 
Sbjct: 768 TARGVVIRQDAADISIQGRHTQGVTLIRLDEGDRVVSLARVVVEE 812



 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++  G     P     +    G+ I  +  L  N  ++ A +     ++++++++G 
Sbjct: 713 MLVVTEKGFGKRTPFSEYRAQTRGGKGIYTIRILEKNGPVMGAKMVRPGDEVMMITARGV 772

Query: 623 AFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV 656
               + ++I    R  +G T +++   +++  + +V
Sbjct: 773 VIRQDAADISIQGRHTQGVTLIRLDEGDRVVSLARV 808


>gi|148262090|ref|YP_001228796.1| DNA gyrase, A subunit [Geobacter uraniireducens Rf4]
 gi|146395590|gb|ABQ24223.1| DNA gyrase subunit A [Geobacter uraniireducens Rf4]
          Length = 832

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/753 (33%), Positives = 396/753 (52%), Gaps = 15/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L + N  AV++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM +MG D+   
Sbjct: 2   LTQTNKVAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RY
Sbjct: 62  YKKSARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM Q+A  +L  +D++ V+    Y++   EP+V P+KFPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEIRMYQLAHELLADLDKETVEMGPNYDDSLQEPLVLPAKFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A+I NP ++ E+L+E I GPDFPT G  +  RE IV +Y  GRG  +
Sbjct: 182 PPHNLSEVIDGIIAVIQNPLLTFEELIELIPGPDFPTAG-FIYGREGIVSAYGTGRGIIQ 240

Query: 252 VRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E   +     IVVTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES  +  
Sbjct: 241 MRARAMIETHKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  +P +L+  ++  + M++ F + M  +     P+V+ L   +  ++ HRRE
Sbjct: 301 RIVIELKKDENPQILLNHLYKQTQMQSSFGIIMLAIV-NNRPRVLTLRETINYFIDHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           ++ RR+ F ++  + R  IL+GL IA  N+DE+I +I++   P       +SRF L+E Q
Sbjct: 360 IVTRRTIFDLKKAEARAHILEGLKIALDNLDEVINLIKSSASPAEAKTGLMSRFGLSEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL  L  LE  +I +E   +L    ++  +L S  +  N I  E+RE+K+ F 
Sbjct: 420 AQAILDMRLHRLTGLERDKIVAEYLEILKYIARLKEILASETEILNIIVGELRELKDKFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                     T               +       +  +     R+ +      + +  KE
Sbjct: 480 DKRRTEIVSQTAEISLEDTIVEEDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTGMKTKE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D ++    A + D ++  +  GK Y L    +        G+AI  L++L+ N+ I   
Sbjct: 540 EDFVEQLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRATRGKAIVNLLNLSTNEKITAI 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
                      +++ +  G        E       G   + +   +K+  V    G   V
Sbjct: 600 LPVKEFTADKFIMMATRNGVVKKTPLLEYSHPRVGGIIAVNLDEGDKLITVALTDGRQDV 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE--GLTWIDSAGRS 718
            +  +N K + F    +  + R  +GVR  + +D  +   +          T        
Sbjct: 660 LLASKNGKSIRFKESDVRTVGRVSRGVRGMTLEDDDVVIGMEILNENFTDSTLFTVTENG 719

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + +           RGG G +  K   R+G  +
Sbjct: 720 FGKRTELSEYRCQSRGGKGVITIKTTERNGCVV 752



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 9/154 (5%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCK 613
                 +LL S +GK+      ++ +       ++ +  L  +  ++   + +       
Sbjct: 653 TDGRQDVLLASKNGKSIRFKESDVRTVGRVSRGVRGM-TLEDDDVVIGMEILNENFTDST 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRK 669
           L  V+  G     E SE    +R GK  + + + E+   +  + +VT +  + ++ +  K
Sbjct: 712 LFTVTENGFGKRTELSEYRCQSRGGKGVITIKTTERNGCVVDIKQVTDENDLMLITDQGK 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +L   +     + R  +GVRL   +D      + 
Sbjct: 772 ILRVPVAGFSIIGRNTQGVRLMVTEDEERIVAVA 805


>gi|39995115|ref|NP_951066.1| DNA gyrase subunit A [Geobacter sulfurreducens PCA]
 gi|39981877|gb|AAR33339.1| DNA gyrase, A subunit [Geobacter sulfurreducens PCA]
 gi|298504145|gb|ADI82868.1| DNA gyrase, A subunit [Geobacter sulfurreducens KN400]
          Length = 857

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/770 (33%), Positives = 384/770 (49%), Gaps = 40/770 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM +MG D+   +KKSAR+V
Sbjct: 11  VNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD + YD++VR+AQ F  RYPL+ GQGNFG++DGDS AA RYTE RM Q+
Sbjct: 71  GDVIGKYHPHGDAAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRMEQL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VD    Y+   +EP+V PSKFPNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLNDLEKETVDLGPNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               +A I+NP IS E+LL  I GPDFPTGG  +  RE I++ YR GRG  ++RAR  +E
Sbjct: 191 INGIIATIENPNISFEELLALIPGPDFPTGG-FIYGREGILQGYRTGRGIVQMRARASIE 249

Query: 260 EVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
              +     I+VTEIPYQV K+ LI KIAEL+  K++  + DIRDES  D   ++    R
Sbjct: 250 THKKTERQSIIVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVIDLKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +P +++  ++  + M+T F +NM  +     P+V+ L   +  ++ HRRE++ RR+ F
Sbjct: 310 DENPQVILNHLYKQTQMQTSFGINMLAIV-AGRPRVLTLRDAIGHFIDHRREIVTRRTIF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------------- 415
            ++  + R  IL+G  IA   +D +I +IR    P                         
Sbjct: 369 DLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAKEGLMSGLFSDEEWLRKMGLPL 428

Query: 416 -----VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                       LTE Q   ILNLRL  L  LE  +I  E D++L    ++  +L S  +
Sbjct: 429 PAIHSQYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYDDILKYIARLKEILASEAE 488

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E+RE+KE F           +               +       +  +     
Sbjct: 489 ILKIIVGELRELKEKFGDERRTEIVDRSAEISLEDTIVEEDVVVTVSHTGYIKRTAVSQY 548

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGE 588
           RS +      + +  KE D ++    A + D +L  +  GK Y +    +        G+
Sbjct: 549 RSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVYEIPEGGRATRGK 608

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           AI  L++L  N+ I        +D    +++ +  G        E       G   + + 
Sbjct: 609 AIVNLLNLQENEQITAILSVKGFDDDRNIIMATRLGVVKKSPLREYANIRSGGIIAVNLD 668

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             +K+  V    G   V +  +N K + F  D    M R  +GVR  S +D  +   +  
Sbjct: 669 DGDKLIAVALTDGRQDVLLASKNGKSIRFHEDDARPMGRVSRGVRGMSLEDDDVVIGMEI 728

Query: 704 KICE--GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 G T        + +        +  RGG G +  K   R+G  +
Sbjct: 729 INPNATGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERNGCVV 778



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/488 (11%), Positives = 142/488 (29%), Gaps = 25/488 (5%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R++I       R     R  + +++    +  +   +I        +IE I         
Sbjct: 348 RDAIGHFIDHRREIVTRRTIFDLKKAEARAHILEGYKIALD-WLDAVIELIRGSKTPAEA 406

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
                    S E+    +     ++               +    L ++ L+     +++
Sbjct: 407 KEGLMSGLFSDEEWLRKMGLPLPAIHSQYQKPVRLTEVQAQEILNLRLHRLTGLERDKIL 466

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
                + +++A  +E+L   +      +    E+ +          EI+           
Sbjct: 467 QEYDDILKYIARLKEILASEAEILKIIVGELRELKEKFGDERR--TEIVDRSAEISLEDT 524

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           ++     +T +    I    +   R                E       + S K      
Sbjct: 525 IVEEDVVVTVSHTGYIKRTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFF 584

Query: 476 ACEIREVKEI-FSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRG 528
               +  +   +         R          + +    A L     + +   ++ +  G
Sbjct: 585 TDAGKVYQIKVYEIPEGGRATRGKAIVNLLNLQENEQITAILSVKGFDDDRNIIMATRLG 644

Query: 529 WIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            ++              + A++  +GD L           +LL S +GK+      +   
Sbjct: 645 VVKKSPLREYANIRSGGIIAVNLDDGDKLIAVALTDGRQDVLLASKNGKSIRFHEDDARP 704

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGK 639
                  ++ +  L  +  ++   + +       +  V+  G     E  E    +R GK
Sbjct: 705 MGRVSRGVRGM-SLEDDDVVIGMEIINPNATGSTIFTVTENGFGKRTELDEYRVQSRGGK 763

Query: 640 TFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
             + + + E+    + ++     + + ++ +  K+L   + Q   + R  +GVRL + + 
Sbjct: 764 GIITIKTTERNGCVVDIMQVTDENDLMLITDQGKILRIPVAQFSVIGRNTQGVRLMTAEQ 823

Query: 695 GGISDVIC 702
                 + 
Sbjct: 824 NERIVAVA 831


>gi|302870740|ref|YP_003839376.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47]
 gi|302573599|gb|ADL41390.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47]
          Length = 809

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/751 (32%), Positives = 407/751 (54%), Gaps = 23/751 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSKIAVEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + ++DN   +++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   I++TE+PY V K+RLIEKIAEL+  K+I  + DIRDES ++   ++  
Sbjct: 246 TSIEQTSKGRQRIIITELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L     P+V+ L  +L  ++ H++E++ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVD-NQPKVLTLMDMLNLYIEHQKEIIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+             RF  T+ Q  AIL
Sbjct: 365 TRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVSEAKDRLIQRFKFTDVQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASEAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIE------KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             RRT   +    D    +    +           +        +S K     ++ +  +
Sbjct: 482 --RRTKIIQDEHEDFEEEELIQEQETVVTLTHFGYIKRLPLDTYKSQKRGGRGITGISTR 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D ++      T   IL  +  G+ + L A  +  G    +  AI  LI ++ ++ I  
Sbjct: 540 EDDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQISKDEKITA 599

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
                      L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D V
Sbjct: 600 TMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGNDEV 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V  N   ++F+ + +  M R  +GV+  + ++G    V   K  +G   +      + 
Sbjct: 660 VLVSGNGYCVVFNENDVRVMGRLAQGVKGMTLEEGDFI-VGMEKASDGKYLLCVTENGFG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +          KRG  G L  K   ++GK +
Sbjct: 719 KRSEIEEYRKTKRGAKGVLTYKVTDKTGKIV 749



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 6/176 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              A+   + DSL         D ++L+S +G        ++       + +   + L  
Sbjct: 635 GKKAITLADDDSLVDVKLTSGNDEVVLVSGNGYCVVFNENDVRVMGRLAQGV-KGMTLEE 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVK 655
              IV          LL V+  G     E  E     R  K  L     +K   +  +  
Sbjct: 694 GDFIVGMEKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTDKTGKIVDIKM 753

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           V   D + +       +   + Q+P   R  +GV+L       I      +I    
Sbjct: 754 VNDEDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDGEDIRVSSIARIKAEE 809


>gi|21672982|ref|NP_661047.1| DNA gyrase subunit A [Chlorobium tepidum TLS]
 gi|21646043|gb|AAM71389.1| DNA gyrase subunit A [Chlorobium tepidum TLS]
          Length = 826

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/752 (32%), Positives = 385/752 (51%), Gaps = 13/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E +  +S+   + + YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G  
Sbjct: 1   MQREKILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG++DGDS AA RY
Sbjct: 61  YKKSARVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +L+ +D++ VDF   +++   EP V P+  PNLL NG SGIAVGMAT+I
Sbjct: 121 TEVRMKAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPAAIPNLLVNGASGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+    +ALI+NPEI I  L++++  PDFPTGG I+   E + ++Y  GRG   
Sbjct: 181 PPHNMREVVSGLIALIENPEIEIGDLMKHVTAPDFPTGG-IIYGYEGVRQAYLTGRGKVV 239

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  VE     G   I+VTE+PYQV K RLIEKI EL+  K++  + DIRDES  +  
Sbjct: 240 IRARAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  + M+  F + M  L    VP+V+ L  +++ ++ HR E
Sbjct: 300 RLVIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVD-GVPRVLNLKEMMQYYIRHRNE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           ++ RR+ + + A ++R  IL+GL I   N+DE+I+ IR            + RF LTE Q
Sbjct: 359 IVLRRTQYDLNAAEKRAHILEGLKICLDNLDEVISTIRQSPDTPAAQSRLMDRFGLTEAQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RL+ L  +E  +I  E    LA  E++ S+L S  +Q   I  E+ +V +++ 
Sbjct: 419 SKAILEMRLQRLTGMERQKIDDEYRETLALIEELKSILESPAKQMEIIKAELLKVSDVYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  R            A     +       +        R        ++    K 
Sbjct: 479 DERRTELRPQEGDFSIEDMIAQEDVVITITHEGFIKRFPVSGYRRQHRGGRGVAGAQAKN 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDI--- 602
            D ++    A T + IL  +T G+ Y L    +        G ++  +++L   + I   
Sbjct: 539 EDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAGRAARGRSLANIMELPPGEKIRTY 598

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-V 661
           +    +D    +++ ++KG        E     R G   + +   +++       GDH +
Sbjct: 599 INVRNFDDPHFIIMATAKGIVKKTSLEEYSHPRRTGINAITIDEGDELIEARLTDGDHQI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +   +   + F   ++  M R   GV+  +  +      +        + +      Y 
Sbjct: 659 ILAKSSGYAVRFPESEVRSMGRTAMGVKGITLDEDERCISMVTTKRNDTSLLAVTDNGYG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        + KRG  G +  K   + G  + 
Sbjct: 719 KRSKVEDYRMTKRGARGVITIKAHEKIGNLVG 750



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 7/186 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               ++A+   EGD L  A       +I+L  + G A   P   + S
Sbjct: 618 IVKKTSLEEYSHPRRTGINAITIDEGDELIEARLTDGDHQIILAKSSGYAVRFPESEVRS 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                  +   I L+ ++  ++      +   LL V+  G     +  +     R  +  
Sbjct: 678 MGRTAMGV-KGITLDEDERCISMVTTKRNDTSLLAVTDNGYGKRSKVEDYRMTKRGARGV 736

Query: 642 LKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           + + + EK   +  ++ V   D + ++  N  ++   +  I  + R   GVRL     G 
Sbjct: 737 ITIKAHEKIGNLVGLLDVNDEDDLIIITTNGIVIRQHVSDIRVLGRNTSGVRLIRLDAGD 796

Query: 697 ISDVIC 702
                 
Sbjct: 797 RISATA 802



 Score = 45.9 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/215 (10%), Positives = 68/215 (31%), Gaps = 12/215 (5%)

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            + +       I    + + +  S       RRT    ++  +   L +A +      ++
Sbjct: 600 NVRNFDDPHFIIMATAKGIVKKTSLEEYSHPRRTGINAITIDEGDELIEARLTDGDHQII 659

Query: 524 ISNRGWI---------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAY 573
           ++              RS+   ++ +  +   E +     +     D  LL ++ +G   
Sbjct: 660 LAKSSGYAVRFPESEVRSMGRTAMGVKGITLDEDERCISMVTTKRNDTSLLAVTDNGYGK 719

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI-- 631
                +    +     +  +       ++V     +    L+++++ G       S+I  
Sbjct: 720 RSKVEDYRMTKRGARGVITIKAHEKIGNLVGLLDVNDEDDLIIITTNGIVIRQHVSDIRV 779

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           +     G   +++ + +++    +V         E
Sbjct: 780 LGRNTSGVRLIRLDAGDRISATARVPKSDDDSATE 814


>gi|212712305|ref|ZP_03320433.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM
           30120]
 gi|212685051|gb|EEB44579.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM
           30120]
          Length = 867

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/796 (32%), Positives = 407/796 (51%), Gaps = 64/796 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  
Sbjct: 2   SEIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LA I++ +ISIE L+E+I GPDFPT   I+  R  I+++YR GRG  
Sbjct: 182 IPPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAA-IINGRRGIIDAYRTGRGKV 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D 
Sbjct: 241 YIRARAEVEVDEKNGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  I+  ++ HRR
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKILNLKDIIAAFVRHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------- 415
           EV+ RR+ F ++    R  IL+ L +A  NID II +IR    P                
Sbjct: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLIARSWALGN 419

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                  V   ++ LTE Q  AIL+LRL+ L  LE  ++  E  
Sbjct: 420 VAAMLERAGDDAARPEWLEPQYGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYR 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            LL + E++  +L S ++    I  E+  +++ ++       RRT   E +        +
Sbjct: 480 ELLKQIEELLFILRSPERLMEVIREELEAIRDAYNDP-----RRTEITENTAD---INIE 531

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S++G+          + +      SA   KE D ++  L A+T D IL
Sbjct: 532 DLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTIL 591

Query: 565 LLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S+ G+ Y +    L        G  I  L+ L  ++ I        Y+    + + ++
Sbjct: 592 CFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGYYVFMATA 651

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
            G        +       G   + ++  +++  V    G + V +     K++ F+ D +
Sbjct: 652 SGTVKKTPLQDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAV 711

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             M R   GVR     D      +     EG   +      + +   +       R   G
Sbjct: 712 RAMGRTATGVRGIKLMDNDKVVSLIIPRGEG-HILTVTENGFGKRTEEAEYPTKSRATQG 770

Query: 738 SLVPKGFPRSGKFLSS 753
            +  K   R+G  + +
Sbjct: 771 VISIKVSERNGHVVGA 786


>gi|253687499|ref|YP_003016689.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754077|gb|ACT12153.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 879

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/793 (33%), Positives = 395/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  IS+E L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKIYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++T F +NM  L     P++MPL  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSQTQLQTSFGINMVAL-HQGQPKIMPLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKASLIAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   R+ LTE Q  AIL+LRL+ L  +E  ++
Sbjct: 415 WELGSVAAMLERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LLAE  ++  +LNS ++    I  E+  +K  +S          +         
Sbjct: 475 LDEYKALLAEIAELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G D   +     K++ FS   +  M
Sbjct: 655 VKKTSLTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  + +       +     EG   +      + +           R   G + 
Sbjct: 715 GRTATGVRGINLQGEDRVVSLIIPRGEGD-ILTVTQNGFGKRTAVNEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|89892752|ref|YP_516239.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51]
 gi|89332200|dbj|BAE81795.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51]
          Length = 828

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/764 (34%), Positives = 428/764 (56%), Gaps = 30/764 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +    +  + +   L++ ++ Y++S I  RA+PD+RDG KPVHRRII+ + E+G+  
Sbjct: 2   STEIQGGKILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VG+ +GK HPHGD S+YD++VRLAQ F  RYPLI G GNFG++DGDSAAA
Sbjct: 62  NKPYSKSARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM+++ + +L  +D+D VDF+  Y+E + EP V P+KFPNLL NG++GIAVGMA
Sbjct: 122 MRYTEARMSKITQYMLADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ E  +A IDNPEI I++L+ YI GPDFPTG  I    E I+ +YR G+G
Sbjct: 182 TNIPPHNLTEVIEGTIAQIDNPEIEIKELMTYIKGPDFPTGASI-MGTEGIISAYRTGKG 240

Query: 249 GFRVRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            FR RA+  VEE+   G   I+VTEIPY V K+RL+EKIAEL+  KRI  + D+RDES  
Sbjct: 241 SFRTRAKAHVEEMEKSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDR 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++    R ++P +L+  ++  + ME  F +N+  L     P+V+ L  I+  ++ H
Sbjct: 301 TGMRIVMELRRDVNPQVLLNQLYKHTQMEESFGVNILALVD-GQPKVLNLKQIIHYFIEH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           +++V+ RR+ F +   +    IL+GL IA   IDE+I+IIR     +     ++SRF L+
Sbjct: 360 QKDVIVRRTRFELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSRFGLS 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AI+++RL+ L  LE  +I+ +   +      + ++LNS +   N I  E++EVKE
Sbjct: 420 DKQSQAIVDMRLKRLTGLEREKIEEQYQKIQETIAYLKAVLNSEQMVLNIIKQELQEVKE 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------ 538
            F        RRT   E+S        + +I+ E + + +S+RG+I+ +  ++       
Sbjct: 480 KFGDE-----RRT---EISFDATHMNIEDLIDDEEVVITMSHRGYIKRMPLNTYKSQRRG 531

Query: 539 --DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  +  +E D ++      T   IL  +T GK Y L A  +      G+  A+  L+
Sbjct: 532 GKGVHGMATREEDFVEKIFTTSTHQYILFFTTRGKVYRLKAHEIPEAGRTGKGTALVNLL 591

Query: 595 DLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            +N +++ +TA +    Y+    L + + KG        E  +  + G   + +S ++++
Sbjct: 592 SINPSEEKITAVLSIRKYNEDFHLFMATRKGIVKKTLLKEYDSPRKDGLIAISLSGDDEL 651

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             V      +H+ +  +N   + F    + +M R   GV+  S +   +   +     E 
Sbjct: 652 IDVRLTKPDEHIIIATKNGLCIRFLESDVRQMGRTAHGVKGISLEKEDLVVSMDVIYEEE 711

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +      +++  +     +  RGG G +  K   ++GK + 
Sbjct: 712 AEILSMTELGFSKRTSLSEYRVQGRGGKGIIATKLNAKTGKLVG 755



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 64/212 (30%), Gaps = 7/212 (3%)

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
           + +   +   +       ++               L A+     D L         + I+
Sbjct: 605 SIRKYNEDFHLFMATRKGIVKKTLLKEYDSPRKDGLIAISLSGDDELIDVRLTKPDEHII 664

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA-FVYDSTCKLLVVSSKGNA 623
           + + +G        ++             I L     +V+   +Y+   ++L ++  G +
Sbjct: 665 IATKNGLCIRFLESDVRQMGRTA-HGVKGISLEKEDLVVSMDVIYEEEAEILSMTELGFS 723

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
                SE     R GK  +      K    + L V    + + ++ E+  ++   +  I 
Sbjct: 724 KRTSLSEYRVQGRGGKGIIATKLNAKTGKLVGLKVMRPENDMMIITEDGIIIRQEVSGIS 783

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           +  R  +GV      +  +  +      E   
Sbjct: 784 KQGRSAQGVMAMRTGESKVVAIAVVDNKEDAE 815


>gi|303240047|ref|ZP_07326568.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2]
 gi|302592316|gb|EFL62043.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2]
          Length = 845

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/769 (31%), Positives = 410/769 (53%), Gaps = 32/769 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ N + ++++  V +   ++  ++ YA+S I +RA+PD+RDG KPVHRRI++ M  +G
Sbjct: 1   MADINDVKDQSIIPVDIEAEMKNSFINYAMSVIVDRALPDVRDGLKPVHRRILYGMFGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                A +K A  VGEV+GK HPHGD +VYDS+VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  FTPDKAHRKCATTVGEVLGKYHPHGDAAVYDSMVRMAQDFSLRYRLVDGHGNFGSVDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ +++  +++ +++D VDF+  ++E + EPVV PS+FPNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARLAKISMEMIRDINKDTVDFKPNFDEHEIEPVVLPSRFPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP  N+ E+ +  + +I+ P+ +I++L + I GPDFPT GIIV  +  I ++YR 
Sbjct: 181 GMATNIPPQNLSEVIDGIVKVIEEPQTTIDELNKIIKGPDFPTAGIIV-GKSGIRDAYRT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA   +E++      IVVTE+PYQV K+RL+EKIA+L+  KRI  + D+RDES
Sbjct: 240 GRGRIIMRAVTNIEQMSPNKQRIVVTELPYQVNKARLVEKIADLVKEKRIENISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLDGIL 361
                 ++    R  + ++++  +F  + M+  F +NM  L         P V+ L   +
Sbjct: 300 DRTGMRIVIELKREANANIVLNQLFKFTQMQETFSVNMLALVQTPDKKFEPHVINLRQAI 359

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMV 418
             ++ H+++V+ RR+ F +   + R  IL+GL IA  N+DE+I IIR+       K  ++
Sbjct: 360 DHYVDHQKDVIVRRTRFELDKAEARAHILEGLKIAIDNLDEVIRIIRSSKNETNAKENLM 419

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RFS +E Q  AI+++RL  L  LE  ++++E   LLA+ +    +L +     + I  E
Sbjct: 420 ERFSFSEKQAQAIVDMRLGRLTALEREKLEAEYQELLAKIKYYKDVLANEFMVLDIIKEE 479

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           + E+K  F        RRT        +     + +IE++   + +++ G+++       
Sbjct: 480 LGEIKGKFGDE-----RRTKII---PDETDFDVEDLIEEQDSVITLTHFGYVKRLPTDTY 531

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
              +     +  L  +E D ++      T D I+  +  GK Y L    +       +  
Sbjct: 532 KSQRRGGKGIIGLSTREEDFVENLFTTSTHDYIMFFTNKGKVYRLKTYEIPEAGRQAKGT 591

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           AI  L+ L+  + + T      Y     L++ +  G     +  E     + G T + + 
Sbjct: 592 AIVNLLQLDQEEKVTTVIPIKEYKEGMYLILATKNGVVKKTDLMEYDHIRKGGLTAVALR 651

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             +++  V    G   + +V +N   + F+ + +  + R  +GVR     D  +   +  
Sbjct: 652 ENDELIDVRLTDGTKDILLVTKNGMSIRFNEEDVRPLGRVSQGVRGIKLDDDDVVIGMGV 711

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            I E  + +    R + +        +  RGG G L  +   ++GK   
Sbjct: 712 FI-EDTSLLVVTERGFGKRTELEEYKVQTRGGKGILTYRVTEKTGKIAG 759



 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 71/185 (38%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+     +         L+A+  +E D L        T  ILL++ +G +      ++  
Sbjct: 628 VVKKTDLMEYDHIRKGGLTAVALRENDELIDVRLTDGTKDILLVTKNGMSIRFNEEDVRP 687

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                + ++  I L+ +  ++   V+     LLVV+ +G     E  E    TR GK  L
Sbjct: 688 LGRVSQGVRG-IKLDDDDVVIGMGVFIEDTSLLVVTERGFGKRTELEEYKVQTRGGKGIL 746

Query: 643 KVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
                EK   +  +  V   D V ++  +  ++  +++ I  + R  +GV L    +   
Sbjct: 747 TYRVTEKTGKIAGMKLVNEKDDVMLISSDGTIIRINVNDISVLGRATQGVTLMRMDESVY 806

Query: 698 SDVIC 702
              I 
Sbjct: 807 LVGIA 811


>gi|241203990|ref|YP_002975086.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857880|gb|ACS55547.1| DNA topoisomerase IV, A subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 751

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/739 (64%), Positives = 616/739 (83%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +++++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+
Sbjct: 13  DDHIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPNSAFR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE
Sbjct: 73  KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++MT V+EL+L+G+D+DAVDFRDTY+E +SEPVV P  FPNLLANG+SGIAVGMATSIPS
Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPS 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVR
Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+R+VL
Sbjct: 253 AKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRVVL 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL 
Sbjct: 313 VPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVLKEWLDHRREVLQ 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS FR+ AIDRR+EIL GLL+AYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN
Sbjct: 373 RRSRFRLAAIDRRLEILSGLLVAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LRKLEE++I+ E D L  EK +I++LL+S  +QW  +A EI EVK+ F+K+T++G
Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIETLLSSDDKQWQTVAWEIGEVKKKFAKATEIG 492

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRT F +    D+  +QQAMIEKEPITVVIS +GWIR+LK H  D + L FKEGD LKI
Sbjct: 493 RRRTQFADAPETDEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKI 552

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+IL+L+T GKA+TL    L  GRGHGE +++++D++++Q ++TAFV+D + K
Sbjct: 553 AFPAQTTDKILILTTGGKAFTLGGDKLPGGRGHGEPLRIIVDMDNDQAVLTAFVHDPSRK 612

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L+VS+ GN F+V E+E++ANTRKGK  + V   E+ +L+V V+GDHVAVVGENRKLL+F
Sbjct: 613 QLIVSTAGNGFVVPEAELVANTRKGKQIMNVGLPEETQLLVPVSGDHVAVVGENRKLLVF 672

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + Q+PEMSRGKGVRLQ YKDGGISDV CF I +GL W DSAGR++ +++++L  WL  R
Sbjct: 673 PLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISDGLVWEDSAGRTFTKNKDELAEWLADR 732

Query: 734 GGVGSLVPKGFPRSGKFLS 752
              G  VPKGFPRSGKF  
Sbjct: 733 ATAGRTVPKGFPRSGKFAG 751


>gi|261822454|ref|YP_003260560.1| DNA gyrase subunit A [Pectobacterium wasabiae WPP163]
 gi|261606467|gb|ACX88953.1| DNA gyrase, A subunit [Pectobacterium wasabiae WPP163]
          Length = 879

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/793 (33%), Positives = 396/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +I++E L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVVNGCLAYIDDEDITLEGLMEHIKGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKIYIRARGEVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++T F +NM  L     P++MPL  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSQTQLQTSFGINMVAL-HQGQPKIMPLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LTE Q  AIL+LRL+ L  +E  ++
Sbjct: 415 WELGSVSTMLERAGDDAARPEWLEPEFGIRDGHYYLTEQQAQAILDLRLQKLTGMEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E  +LLAE  ++  +LNS ++    I  E+  +K  +S          T         
Sbjct: 475 LDEYKDLLAEIAELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G D   +     K++ FS   +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  + +       +     EG   +      + +           R   G + 
Sbjct: 715 GRTATGVRGINLQGEDRVVSLIIPRGEGD-ILTVTQNGFGKRTAVSEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|15612570|ref|NP_240873.1| DNA gyrase subunit A [Bacillus halodurans C-125]
 gi|4033397|sp|O50628|GYRA_BACHD RecName: Full=DNA gyrase subunit A
 gi|2760178|dbj|BAA24188.1| A subunit of DNA gyrase [Bacillus sp.]
 gi|5672653|dbj|BAA82691.1| 76%-identity [Bacillus halodurans]
 gi|10172619|dbj|BAB03726.1| DNA gyrase subunit A [Bacillus halodurans C-125]
          Length = 833

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/752 (32%), Positives = 403/752 (53%), Gaps = 14/752 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              +  VK +++   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G+    
Sbjct: 3   EQDQSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGD+AAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  +++ +++D +D++D Y+  + EPVV PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMSKISMELVRDINKDTIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP H + E+ +  LAL  NP+IS+ +L+E+I GPDFPTG  I+  R  I ++Y+ GRG  
Sbjct: 183 IPPHQLGEVIDGVLALSKNPDISVPELMEHIPGPDFPTGAEIL-GRSGIRKAYQTGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE   G   I+V EIPYQV K++LIEKIAEL+  K+I  + D+RDES  +  
Sbjct: 242 TLRAKTEIEEH-HGKQRIIVHEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  + ++L+ +++  + ++T F +N+  L     P+V+ L   L+ +LAH+  
Sbjct: 301 RIVIEVRKDANANVLLNNLYKQTALQTSFGINLLALV-EGQPKVLNLKECLEHYLAHQVI 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR++F ++  + R  IL+GL IA  ++DE+I++IR+       +  ++ RF L+  Q
Sbjct: 360 VIRRRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMERFELSYEQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I++E   L+    ++ ++L   ++  + I  E+ E+KE ++
Sbjct: 420 AQAILDMRLQRLTGLERDKIEAEYKELIERIAELKAILADHEKVLDIIREELLELKEKYN 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                    +                +       +        RS K     +  +   E
Sbjct: 480 DERKTAISASEDMFEDEDLIPRQNVVITLTHHGYIKRLPISTYRSQKRGGRGIQGMGTNE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++     ++   IL  +  GK Y L    +       +   I  L+ +  ++ I T 
Sbjct: 540 DDFVQHLFTTNSHHTILFFTNKGKVYRLKGYEIPELGRTAKGIPIINLLQIEQDEYISTI 599

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                +     L  ++  G A   + S      R G   + +   +++  V    GD  V
Sbjct: 600 IPIEEFTEDHYLFFMTKDGIAKRTQLSSFANIRRGGLFAINLREGDELHGVRLTNGDKEV 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            V       + F    +  M R   GV+  S   G    V    + +G   +    + + 
Sbjct: 660 IVGTRQGMAIRFHETDVRLMGRTATGVKGISL-TGDDHVVGMDIVEDGQDVLIVTEKGFG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        +  RGG G        ++G  +S
Sbjct: 719 KRTPIADYRIQTRGGKGIKTCNITEKNGPLVS 750



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/411 (10%), Positives = 109/411 (26%), Gaps = 15/411 (3%)

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
             S++   I         +         +   ++    L  + +       +  +  +  
Sbjct: 396 IRSSQTTEIARNGLMERFELSYEQAQAILDMRLQRLTGLERDKIEAEYKELIERIAELKA 455

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
               H + +   R            E    +  +    ++   I R              
Sbjct: 456 ILADHEKVLDIIREELLELKEKYNDERKTAISASEDMFEDEDLIPRQNVVITLTHHGYIK 515

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
                         R ++ +   +                    +  + +     EI E+
Sbjct: 516 RLPISTYRSQKRGGRGIQGMGTNEDDFVQHLFTTNSHHTILFFTNKGKVYRLKGYEIPEL 575

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
                 +  +        E        +      ++     ++  G  +  +  S     
Sbjct: 576 GR---TAKGIPIINLLQIEQDEYISTIIPIEEFTEDHYLFFMTKDGIAKRTQLSSFANIR 632

Query: 539 --DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
              L A++ +EGD L      +    +++ +  G A      ++         +   I L
Sbjct: 633 RGGLFAINLREGDELHGVRLTNGDKEVIVGTRQGMAIRFHETDVRLMGRTATGV-KGISL 691

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKL 652
             +  +V   + +    +L+V+ KG       ++    TR GK      +   +   + L
Sbjct: 692 TGDDHVVGMDIVEDGQDVLIVTEKGFGKRTPIADYRIQTRGGKGIKTCNITEKNGPLVSL 751

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            V      + ++  +  ++   +  I    R  +GV L    +G     + 
Sbjct: 752 KVVSVDHDLMIITASGIIIRLHVKDISVTGRITQGVTLIRVAEGEEVATVA 802


>gi|15964952|ref|NP_385305.1| DNA topoisomerase IV subunit A [Sinorhizobium meliloti 1021]
 gi|307301023|ref|ZP_07580792.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti BL225C]
 gi|7387990|sp|Q59749|PARC_RHIME RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|15074131|emb|CAC45778.1| Probable topoisomerase IV subunit A [Sinorhizobium meliloti 1021]
 gi|306903978|gb|EFN34564.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti BL225C]
          Length = 758

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 491/747 (65%), Positives = 610/747 (81%), Gaps = 8/747 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMGL   ++FK
Sbjct: 12  DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE
Sbjct: 72  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P  FPNLLANG SGIAVGMATSIP 
Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY--------IIGPDFPTGGIIVESRESIVESYRL 245
           HN  E+C+AAL LI +P+ ++E LL          I GPDFPTGG+IVESR S+ ESYR 
Sbjct: 192 HNAHELCDAALHLIKHPDATVEDLLFDPANPQRGGIEGPDFPTGGVIVESRASMAESYRT 251

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES
Sbjct: 252 GRGGFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 311

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL
Sbjct: 312 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 371

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           AHRREVL RRS  R+ AIDRR+EIL G LIAYLNIDE+I IIR ED+PK VM+ RF LT+
Sbjct: 372 AHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFGLTD 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE++I++E D+L  EK +I++LL SG +QW  +A EI EVK+ 
Sbjct: 432 VQAEAILNMRLRSLRKLEEFEIRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+K+T+LG+RR+TF +   AD   +QQAMIEKEPITVVIS +GWIR+LK H  D S+L F
Sbjct: 492 FAKATELGKRRSTFSDAPDADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTSSLQF 551

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD LK++  A TTD+IL+ +T GKAYTL    L  GRGHGE +++++D+ ++QD++TA
Sbjct: 552 KDGDGLKVSFPAQTTDKILIFTTGGKAYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTA 611

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+D   KL+V S+ GN F+V ES+I+ANTRKGK  + V+  ++ KLVV V GDH+AVVG
Sbjct: 612 FVHDPARKLIVSSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKGDHLAVVG 671

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRK+L+F + Q+PEM+RGKGVRLQ YKDGG+SD+  F I EGLTW DSAGR + ++ ++
Sbjct: 672 ENRKMLVFPLVQVPEMARGKGVRLQRYKDGGVSDIRSFAIAEGLTWEDSAGRVFTKTRDE 731

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           L+ W+G R G G +VPKGFPRSGKF  
Sbjct: 732 LIEWMGDRAGAGRVVPKGFPRSGKFSG 758


>gi|227821521|ref|YP_002825491.1| DNA topoisomerase IV subunit A [Sinorhizobium fredii NGR234]
 gi|227340520|gb|ACP24738.1| DNA topoisomerase IV subunit A [Sinorhizobium fredii NGR234]
          Length = 753

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 491/747 (65%), Positives = 608/747 (81%), Gaps = 8/747 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMGL   ++FK
Sbjct: 7   DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE
Sbjct: 67  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P  FPNLLANG SGIAVGMATSIP 
Sbjct: 127 AKMTEVAALLLEGIDQDAVDFRPTYNEEDEEPGVLPGAFPNLLANGASGIAVGMATSIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY--------IIGPDFPTGGIIVESRESIVESYRL 245
           HN  E+C+AAL LI +P+  +E LL          I GPDFPTGGIIVESR S++ESYR 
Sbjct: 187 HNAHELCDAALHLIRHPKAPLEDLLFDPANPQRGGIEGPDFPTGGIIVESRASMLESYRT 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES
Sbjct: 247 GRGGFRVRARWSVEDLGRGGYQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 306

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL
Sbjct: 307 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 366

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           AHRREVL RRS  R+ AIDRR+EIL G L+AYLNIDE+I IIR ED+PK +M+ RF+LT+
Sbjct: 367 AHRREVLQRRSRHRLAAIDRRLEILGGYLVAYLNIDEVIRIIREEDEPKAMMIERFALTD 426

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE++I++E D L  EK +I++LL S  +QW  +A EI EVK+ 
Sbjct: 427 VQAEAILNMRLRSLRKLEEFEIRTEFDALSKEKAEIEALLASDDKQWQAVAWEIGEVKKK 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+K+T+LG+RR+TF +   AD   +QQAMIEKEPITVVIS +GWIR+LK H  D SAL F
Sbjct: 487 FAKATELGKRRSTFADAPDADIEAIQQAMIEKEPITVVISEKGWIRALKGHISDTSALQF 546

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD+LK+A  A TTD+IL+ +T GK YTL    L  GRGHGE +++++D+ ++QD++TA
Sbjct: 547 KDGDALKVAFPAQTTDKILVFTTGGKVYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTA 606

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
            V+D   KL+V S+ GN F+V ES+I+ANTRKGK  + V   ++ KLVV   GDHVAVVG
Sbjct: 607 LVHDPARKLIVSSAAGNGFVVTESDIVANTRKGKQVMNVVMPDEAKLVVPTKGDHVAVVG 666

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +NRK+L+F + QIPEM+RGKGVRLQ YKDGGISD+ CF + EGLTW DSAGR + +++++
Sbjct: 667 DNRKMLVFPLAQIPEMARGKGVRLQRYKDGGISDIRCFTMAEGLTWEDSAGRVFTKTKDE 726

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           L+ WLG R G G LVPKGFPRSG+F  
Sbjct: 727 LVEWLGDRAGAGRLVPKGFPRSGRFSG 753


>gi|218709923|ref|YP_002417544.1| DNA gyrase, subunit A [Vibrio splendidus LGP32]
 gi|218322942|emb|CAV19119.1| DNA gyrase, subunit A [Vibrio splendidus LGP32]
          Length = 890

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/800 (33%), Positives = 414/800 (51%), Gaps = 67/800 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY+S+VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D+D VDF   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N +I+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R+R  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSRAEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  +  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYSQTQLQTTFGINMVALN-NGQPQLFNIKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDEII +I+N   P            
Sbjct: 355 DHRREVVTRRTIFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 DLGNVASMLERAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++I+        RRT   E++ A   
Sbjct: 475 DEYKALLEEIAELMHILASTERLMEVIREELEAVRDIYGDE-----RRT---EITAAVHD 526

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              + +I +E + V +SN G+          + +      SA   K+ D ++  L A+T 
Sbjct: 527 IDMEELIAQEDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTH 586

Query: 561 DRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
           D IL  ST GK Y L    L        G+ I  ++ L   + I        + +   + 
Sbjct: 587 DNILCFSTRGKTYRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIF 646

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + +  G        +       G   + +  ++ +  V    G+  + +  ++ K++ F+
Sbjct: 647 MATGDGTVKKTSLDQFANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFN 706

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            D++  M R   GVR     +      +     EG   +      Y +           R
Sbjct: 707 EDKVRPMGRTASGVRGMKLPEDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGR 765

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
              G +  K   R+G  + +
Sbjct: 766 ATQGVVSIKVSDRNGPVVGA 785


>gi|227537184|ref|ZP_03967233.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242899|gb|EEI92914.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 848

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/769 (29%), Positives = 399/769 (51%), Gaps = 20/769 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +  + +N      +  +++   ++  Y+ Y++S I  RA+PD RDG KPVHRR+++ 
Sbjct: 1   MAEETENENNLSANGRIIPINIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYG 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++G+  G  +KKSARIVG+V+GK HPHGD SVYD++VRLAQ +  RYPL+ GQGN+G+
Sbjct: 61  MLDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  AA RYTEAR+ ++AE +L  +++D VDF+  +++   EP V P++ PNLL NG 
Sbjct: 121 IDGDPPAAMRYTEARLKKIAEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E+ +  +A IDN EI I +L++YI GPDFPTGG I+     + 
Sbjct: 181 SGIAVGMATNMAPHNLSEVVDGTIAFIDNREIEISELMQYIKGPDFPTGG-IIYGYNGVK 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+   GRG   +RA+  +E    G  CI+VTEIPYQV K+ +I++ AEL+  K+I  + +
Sbjct: 240 EACETGRGRVVMRAKAEIETTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISE 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  +   V++   R  + ++++ +++  + ++T F +N   L     P +M L  +
Sbjct: 300 IRDESDREGFRVVYDIKRDANANVVLNNLYKYTALQTSFSVNNIALVK-GRPMMMNLKDM 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           + E++ HR EV+ RR+ F +   ++R  IL+G LIA  ++DE+I +IR     +  +  +
Sbjct: 359 IHEFVEHRHEVVIRRTKFELAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF+L++ Q  AIL++ LR L  LE  +IK E + L+   E +  +L+    +   I  
Sbjct: 419 MERFALSDLQARAILDMTLRRLTGLERDKIKEEYNELMKTIEYLKEVLSDEGLRMKIIKD 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K+ +          +             +  +       V  +     +      
Sbjct: 479 ELLEIKDKYGDERRSIIVHSAEDMRMEDFIDDEEIVITISHNSYVKRTPLSEYKRQGRGG 538

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
                 + +E D  +  + A   + +L  +  G+ + L A  +        G A+Q +I+
Sbjct: 539 RGSIGTNTREEDFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGSRTSRGRALQNIIN 598

Query: 596 LNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           +  ++ I             Y     +++ + KG                G   + ++  
Sbjct: 599 IPKDEKIKAYIKVINLKDQEYLENNFIIMCTKKGTIKKTSLEAYSRPRANGINAININEG 658

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICF 703
           +++       G   + +   + + + F+   +  M R   GVR  +   +   +  +I  
Sbjct: 659 DQLIEACLTDGSSEIVMALRSGRAIRFNESTVRPMGRTATGVRGITLAHEKDEVVGMISV 718

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              E +T +  + + Y +  +     +  RGG G        ++G+ ++
Sbjct: 719 NNPE-VTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTDKTGELVA 766



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/518 (10%), Positives = 150/518 (28%), Gaps = 21/518 (4%)

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES-RESIVESYRLGRGGFRV 252
           ++++    A + L +  + +  +    +       G  ++ + ++ I E           
Sbjct: 313 YDIKRDANANVVLNNLYKYTALQTSFSVNNIALVKGRPMMMNLKDMIHEFVEHRHEVVIR 372

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--AKRIPLLEDIRDESAEDVR 310
           R ++ + E  + +   ++      +     + K+             L +    S    R
Sbjct: 373 RTKFELAEAEKRAH--ILEGYLIALDHLDEVIKLIRASETPEDARTGLMERFALSDLQAR 430

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +L    R L      +     +++         VLS   +   +  D +L+    +  E
Sbjct: 431 AILDMTLRRLTGLERDKIKEEYNELMKTIEYLKEVLSDEGLRMKIIKDELLEIKDKYGDE 490

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
                               + ++I   +   +                    +      
Sbjct: 491 RRSIIVHSAEDMRMEDFIDDEEIVITISHNSYVKRT---PLSEYKRQGRGGRGSIGTNTR 547

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
             +     +       +    +                +         ++ +  I     
Sbjct: 548 EEDFTEHIITASAHNYMLFFTEAGRCF---WLRAFEIPEGSRTSRGRALQNIINIPKDEK 604

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                +    +     +          +  T+  ++       +++   ++A++  EGD 
Sbjct: 605 IKAYIKVINLKDQEYLENNFIIMC--TKKGTIKKTSLEAYSRPRAN--GINAININEGDQ 660

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD- 609
           L  A     +  I++    G+A       +         ++ +   +   ++V     + 
Sbjct: 661 LIEACLTDGSSEIVMALRSGRAIRFNESTVRPMGRTATGVRGITLAHEKDEVVGMISVNN 720

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTG-DHVAVVG 665
               +LVVS KG     +  +     R GK    ++  +   ++  +  VT  + + ++ 
Sbjct: 721 PEVTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTDKTGELVAIKDVTDSEDLMIIN 780

Query: 666 ENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
           ++  ++   +  +  M R  +GVRL + KD      I 
Sbjct: 781 KSGIVIRIGVADLRVMGRATQGVRLINLKDNDEIASIT 818


>gi|157961888|ref|YP_001501922.1| DNA gyrase subunit A [Shewanella pealeana ATCC 700345]
 gi|157846888|gb|ABV87387.1| DNA gyrase, A subunit [Shewanella pealeana ATCC 700345]
          Length = 903

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/807 (32%), Positives = 391/807 (48%), Gaps = 68/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RYPLI GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +VA  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI++P +SIE+L+EYI GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLNEVISGCLALIEDPALSIEQLMEYIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR  +EE   G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRARAEIEEEN-GRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 300 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 359 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHV 418

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +   ++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 419 KGMLEKAGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 478

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ EV   F                           
Sbjct: 479 LLEIIAALLFILGSPERLMEVIKEELEEVLTNFGDERRTVINANEVDMSLEDLINEEDVV 538

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +      +A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 539 VTLSHLGYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 598

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  L+ L   + I        Y     +++ +S G       
Sbjct: 599 WLKVYQLPLASRTARGRPIVNLLPLAEGERITAILPVREYAEDKYIIMATSHGTVKKTAL 658

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID----------- 676
           +        G   + +   +++  V    G D + +     K++ F+             
Sbjct: 659 TAYSNPRVNGIIAVNLKDGDQLIGVDITDGNDDIMLFSNEGKVVRFNEKARSSETGEVKI 718

Query: 677 ---------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
                     +  M R   GVR    +DG     +     EG   +      Y +  +  
Sbjct: 719 DPETGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPKGEGD-ILTVTENGYGKRTDLA 777

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  K   R+G  + +
Sbjct: 778 EYPAKSRGTKGVVSIKVSERNGAVVGA 804


>gi|119774866|ref|YP_927606.1| DNA gyrase subunit A [Shewanella amazonensis SB2B]
 gi|119767366|gb|ABL99936.1| DNA gyrase subunit A [Shewanella amazonensis SB2B]
          Length = 901

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/820 (32%), Positives = 409/820 (49%), Gaps = 88/820 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+
Sbjct: 122 YTEIRMEKLAHELLADLEKETVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI+ PE+SIE+L+EYI GPDFPT   I+  ++ I E+YR GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIEEPELSIEQLMEYIPGPDFPTAA-IINGKKGIEEAYRTGRGKA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR  VE    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 IMRARAEVEIEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M++ F +NM  L     P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQSSFGINMVAL-ANGQPKLFNLKEMLEAFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ + ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVYELRKARDRAHILEALAVALANIDPIIALIKASASPSDAKAGLIAKGWELGTV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +    + +TE Q  AIL+LRL  L  LE  +I  E + 
Sbjct: 420 KAMLEKAGDDAARPEWLEPEFGIRDGLYFMTEPQAQAILDLRLHKLTGLEHEKILQEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+  + E F        RRT   E++ +      + 
Sbjct: 480 LLEIIAGLLHILRSPERLMEVIKEELELILEQFGD-----NRRT---EINASAVDISLED 531

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+         ++ +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S +  G  I  L+ L   + I        Y+    +L+ +S 
Sbjct: 592 FSDFGKLYWLKVYQLPLASRQARGRPIVNLLPLQEGERITAILPVREYEEGKYILMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ-- 677
           G       +E       G   + +   +++  V    G   + +  +  K++ F   +  
Sbjct: 652 GTVKKTALTEYSRPRSNGIIAVNLKDGDQLIGVDITDGSSEIMLFSDAGKVVRFKEGEEV 711

Query: 678 -----------------------IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
                                  +  M RG  GVR  + ++G    V      +    + 
Sbjct: 712 AVVDENGNPVLDEEGKPQINFKGVRPMGRGATGVRGIALEEGQRV-VSLIVPKDDSAILT 770

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +           R   G +  K   R+G  + +
Sbjct: 771 VTANGFGKRTELAEYPAKSRATKGVVSIKVTERNGPVVGA 810


>gi|253999244|ref|YP_003051307.1| DNA gyrase subunit A [Methylovorus sp. SIP3-4]
 gi|313201333|ref|YP_004039991.1| DNA gyrase subunit A [Methylovorus sp. MP688]
 gi|253985923|gb|ACT50780.1| DNA gyrase, A subunit [Methylovorus sp. SIP3-4]
 gi|312440649|gb|ADQ84755.1| DNA gyrase, A subunit [Methylovorus sp. MP688]
          Length = 848

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/780 (29%), Positives = 376/780 (48%), Gaps = 47/780 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+ NPE ++++L++ I  PDFPT G I+     + E YR GRG   +R R  V
Sbjct: 190 VVDACLVLLKNPETTVDELIDIIPAPDFPTAG-IIYGTLGVKEGYRTGRGRVVMRGRTHV 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++       +++ E+PYQV K  LIEKIAEL+  K+I  + D+RDES +    V+    
Sbjct: 249 EDMEKGNRQALIIDELPYQVNKKTLIEKIAELVNDKKIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVILNNLYKQTQLQDTFGMNMVALLD-GQPRLLNLKQMLEAFLRHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------------- 415
           + ++    R  +L+GL +A  N+DE+IA+I+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMARTWVSPVVEEMLKRA 427

Query: 416 ---------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                          +  + + L++ Q   IL +RL+ L  LE+ +I +E   ++     
Sbjct: 428 AMEASRPDGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVIAD 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L   ++    I  E+  +++ F                           +      
Sbjct: 488 LLDILAKPERVTQMIVDELAAIRQQFGDERRSEIVHNAQDLSLEDLITPQDVVVTLSHTG 547

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            V        R+ +       A   KE D +     A+T D IL  S+ G+ Y L    +
Sbjct: 548 YVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVYWLKVYEV 607

Query: 581 LS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
                   G+ I  L  L   + I        +D    + + +++G        E     
Sbjct: 608 PQGSRISRGKPIVNLFPLEDGEKINAILPVKEFDENHFIFMATAQGTVKKTALVEFSNPR 667

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
           R G   + +   + +       G + + +V    K + F  + +  M R  +GVR     
Sbjct: 668 RAGIIAINLDDGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAMGRNTRGVRGMKLM 727

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  +     +  T + +    Y +           RG  G        R+G  +++
Sbjct: 728 AKQRVISLLIAEDDKQTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIATSERNGSVVAA 787



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 5/179 (2%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +     +         + A++  +GD L  A   +  + I+L+S  GKA      ++ +
Sbjct: 654 TVKKTALVEFSNPRRAGIIAINLDDGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRA 713

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKT 640
              +   ++ +  +   + I      D    +LV +  G       S+   + R   G  
Sbjct: 714 MGRNTRGVRGMKLMAKQRVISLLIAEDDKQTVLVATENGYGKRTVLSDFRHSGRGTQGVK 773

Query: 641 FLKVSS-EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
            +  S     +     V   D + ++     L+   + +I E+ R  +GV L +  +  
Sbjct: 774 AIATSERNGSVVAARLVSDEDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGENE 832


>gi|300772983|ref|ZP_07082852.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300759154|gb|EFK55981.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 848

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/769 (29%), Positives = 398/769 (51%), Gaps = 20/769 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +  + +N      +  +++   ++  Y+ Y++S I  RA+PD RDG KPVHRR+++ 
Sbjct: 1   MAEETENENNLSANGRIIPINIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYG 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++G+  G  +KKSARIVG+V+GK HPHGD SVYD++VRLAQ +  RYPL+ GQGN+G+
Sbjct: 61  MLDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  AA RYTEAR+ + AE +L  +++D VDF+  +++   EP V P++ PNLL NG 
Sbjct: 121 IDGDPPAAMRYTEARLKKFAEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E+ +  +A IDN EI I +L++YI GPDFPTGG I+     + 
Sbjct: 181 SGIAVGMATNMAPHNLSEVVDGTVAFIDNREIEISELMQYIKGPDFPTGG-IIYGYNGVK 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+   GRG   +RA+  +E    G  CI+VTEIPYQV K+ +I++ AEL+  K+I  + +
Sbjct: 240 EACETGRGRVVMRAKAEIETTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISE 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  +   V++   R  + ++++ +++  + ++T F +N   L     P +M L  +
Sbjct: 300 IRDESDREGFRVVYDIKRDANANVVLNNLYKYTALQTSFSVNNIALVK-GRPMMMNLKDM 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           + E++ HR EV+ RR+ F +   ++R  IL+G LIA  ++DE+I +IR     +  +  +
Sbjct: 359 IHEFVEHRHEVVIRRTKFELAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF+L++ Q  AIL++ LR L  LE  +IK E + L+   E +  +L+    +   I  
Sbjct: 419 MERFALSDLQARAILDMTLRRLTGLERDKIKEEYNELMKTIEYLKEVLSDEGLRMKIIKD 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K+ +          +             +  +       V  +     +      
Sbjct: 479 ELLEIKDKYGDERRSIIVHSAEDMRMEDFIDDEEIVITISHNSYVKRTPLSEYKRQGRGG 538

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
                 + +E D  +  + A   + +L  +  G+ + L A  +        G A+Q +I+
Sbjct: 539 RGSIGTNTREEDFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGSRTSRGRALQNIIN 598

Query: 596 LNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           +  ++ I             Y     +++ + KG                G   + ++  
Sbjct: 599 IPKDEKIKAYIKVINLKDQEYLENNFIIMCTKKGTIKKTSLEAYSRPRANGINAININEG 658

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICF 703
           +++       G   + +   + + + F+   +  M R   GVR  +   +   +  +I  
Sbjct: 659 DQLIEACLTDGSSEIVMALRSGRAIRFNESTVRPMGRTATGVRGITLAHEKDEVVGMISV 718

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              E +T +  + + Y +  +     +  RGG G        ++G+ ++
Sbjct: 719 NNPE-VTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTDKTGELVA 766



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/518 (10%), Positives = 150/518 (28%), Gaps = 21/518 (4%)

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES-RESIVESYRLGRGGFRV 252
           ++++    A + L +  + +  +    +       G  ++ + ++ I E           
Sbjct: 313 YDIKRDANANVVLNNLYKYTALQTSFSVNNIALVKGRPMMMNLKDMIHEFVEHRHEVVIR 372

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--AKRIPLLEDIRDESAEDVR 310
           R ++ + E  + +   ++      +     + K+             L +    S    R
Sbjct: 373 RTKFELAEAEKRAH--ILEGYLIALDHLDEVIKLIRASETPEDARTGLMERFALSDLQAR 430

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +L    R L      +     +++         VLS   +   +  D +L+    +  E
Sbjct: 431 AILDMTLRRLTGLERDKIKEEYNELMKTIEYLKEVLSDEGLRMKIIKDELLEIKDKYGDE 490

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
                               + ++I   +   +                    +      
Sbjct: 491 RRSIIVHSAEDMRMEDFIDDEEIVITISHNSYVKRT---PLSEYKRQGRGGRGSIGTNTR 547

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
             +     +       +    +                +         ++ +  I     
Sbjct: 548 EEDFTEHIITASAHNYMLFFTEAGRCF---WLRAFEIPEGSRTSRGRALQNIINIPKDEK 604

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                +    +     +          +  T+  ++       +++   ++A++  EGD 
Sbjct: 605 IKAYIKVINLKDQEYLENNFIIMC--TKKGTIKKTSLEAYSRPRAN--GINAININEGDQ 660

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD- 609
           L  A     +  I++    G+A       +         ++ +   +   ++V     + 
Sbjct: 661 LIEACLTDGSSEIVMALRSGRAIRFNESTVRPMGRTATGVRGITLAHEKDEVVGMISVNN 720

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTG-DHVAVVG 665
               +LVVS KG     +  +     R GK    ++  +   ++  +  VT  + + ++ 
Sbjct: 721 PEVTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTDKTGELVAIKDVTDSEDLMIIN 780

Query: 666 ENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
           ++  ++   +  +  M R  +GVRL + KD      I 
Sbjct: 781 KSGIVIRIGVADLRVMGRATQGVRLINLKDNDEIASIT 818


>gi|259047899|ref|ZP_05738300.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175]
 gi|259035576|gb|EEW36831.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175]
          Length = 861

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/765 (31%), Positives = 408/765 (53%), Gaps = 29/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      EE  ++  L   + + +L Y++S I  RA+PD+RDG KPVHRRI++ MSE+G
Sbjct: 1   MSEEVKHFEETFESTDLVQTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++YD++VR+AQ F  RYPLI G GNFG++DGD 
Sbjct: 61  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D ++FRD Y+  + EP V P++ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMSKIALEMLRDINKDTINFRDNYDSTEREPEVLPARIPNLLVNGATGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+ NP+++  +L+E + GPDFPTGGI++  +  I  +Y  
Sbjct: 181 GMATNIPPHNLAEVISALHLLMKNPDVTTTELMEALPGPDFPTGGIVL-GKSGIRRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VR R  +EE+  G   I++TE+PY V K+RL+E+IA+L   K+I  +  + DES
Sbjct: 240 GRGSITVRGRVQIEELKNGKERIIITELPYMVNKARLVERIAQLHHEKKIEGITYLNDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    R +   +++ +++ L+ +++ F  NM  +   + P+V+ L  IL+ +L
Sbjct: 300 DRVGMRVVIEVRRDVSASVVLNNLYKLTPLQSNFGFNMLAIV-NQEPKVLSLKEILRHYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H+ EV+ RRS F  +  + R  IL+GL IA  +ID I+AI+R+           ++ + 
Sbjct: 359 DHQEEVVRRRSLFDKKKAEDRAHILEGLQIALDHIDAIVAILRSSASGDIAKDRFMNEYG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++R+  L  LE  +I +E + L A  + ++ +L S + ++  I  E+ E+
Sbjct: 419 LSDKQAQAILDMRMVRLTGLEREKIDAEYNELQATIQYLEKVLASEELRYEIIEQELLEI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F        RRT          +   + +IE+E + + ++  G+I+          +
Sbjct: 479 QQRFDNP-----RRTELL--VGEALSLEDEDLIEQEDVVITLTKNGYIKRLANTEFKAQR 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  +   T D +L  +  GK Y      +       +   +  
Sbjct: 532 RGGRGVQGMSVHDDDYVENMISCSTHDSLLFFTNTGKVYQAKGYEIPEYSRTAKGLPVIN 591

Query: 593 LIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L++++  + I               L   + +G    V  SE       G   +++  ++
Sbjct: 592 LLNIDSAEKIQAIISVPESDETERYLFFTTLRGTVKRVRLSEFKNIRTNGLRAIQLREDD 651

Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  VV  +G+  + +   +   + F  D++  M R   GVR  S +DG     +     
Sbjct: 652 ELIRVVVTSGNDGIILGTYHGNAVSFHEDKVRAMGRTASGVRGVSLRDGDYVIGMDILTP 711

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +    +  + + Y +        L  RGG G    +   ++G  +
Sbjct: 712 DNE-VLVVSEKGYGKRTAASEYALKGRGGKGVRTLRITEKNGPLV 755



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 5/132 (3%)

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           + +   G   +    + L     ++   +     ++LVVS KG       SE     R G
Sbjct: 680 DKVRAMGRTASGVRGVSLRDGDYVIGMDILTPDNEVLVVSEKGYGKRTAASEYALKGRGG 739

Query: 639 KTFLKVS---SEEKMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSYK 693
           K    +        +  +  VTGD   ++      ++ F  + + +  RG  GVR+    
Sbjct: 740 KGVRTLRITEKNGPLVCLRTVTGDEDLLIMTNKGVIIRFHAEDVSQTGRGALGVRMMRLD 799

Query: 694 DGGISDVICFKI 705
              I   +    
Sbjct: 800 QDAIVSSLAIVD 811


>gi|307317757|ref|ZP_07597195.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti AK83]
 gi|306896519|gb|EFN27267.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti AK83]
          Length = 758

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 491/747 (65%), Positives = 610/747 (81%), Gaps = 8/747 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMGL   ++FK
Sbjct: 12  DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE
Sbjct: 72  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P  FPNLLANG SGIAVGMATSIP 
Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY--------IIGPDFPTGGIIVESRESIVESYRL 245
           HN  E+C+AAL LI +P+ ++E LL          I GPDFPTGG+IVESR S+ ESYR 
Sbjct: 192 HNAHELCDAALHLIKHPDATVEDLLFDPANPRRGGIEGPDFPTGGVIVESRASMAESYRT 251

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES
Sbjct: 252 GRGGFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 311

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL
Sbjct: 312 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 371

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           AHRREVL RRS  R+ AIDRR+EIL G LIAYLNIDE+I IIR ED+PK VM+ RF LT+
Sbjct: 372 AHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFGLTD 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE++I++E D+L  EK +I++LL SG +QW  +A EI EVK+ 
Sbjct: 432 VQAEAILNMRLRSLRKLEEFEIRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+K+T+LG+RR+TF +   AD   +QQAMIEKEPITVVIS +GWIR+LK H  D S+L F
Sbjct: 492 FAKATELGKRRSTFSDAPDADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTSSLQF 551

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD LK++  A TTD+IL+ +T GKAYTL    L  GRGHGE +++++D+ ++QD++TA
Sbjct: 552 KDGDGLKVSFPAQTTDKILIFTTGGKAYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTA 611

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+D   KL+V S+ GN F+V ES+I+ANTRKGK  + V+  ++ KLVV V GDH+AVVG
Sbjct: 612 FVHDPARKLIVSSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKGDHLAVVG 671

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRK+L+F + Q+PEM+RGKGVRLQ YKDGG+SD+  F I EGLTW DSAGR + ++ ++
Sbjct: 672 ENRKMLVFPLVQVPEMARGKGVRLQRYKDGGVSDIRSFAIAEGLTWEDSAGRVFTKTRDE 731

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           L+ W+G R G G +VPKGFPRSGKF  
Sbjct: 732 LIEWMGDRAGAGRVVPKGFPRSGKFSG 758


>gi|197285591|ref|YP_002151463.1| DNA gyrase subunit A [Proteus mirabilis HI4320]
 gi|194683078|emb|CAR43604.1| DNA gyrase subunit A [Proteus mirabilis HI4320]
          Length = 877

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/802 (32%), Positives = 409/802 (50%), Gaps = 69/802 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  ++++ VDF   Y+  ++ P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA +DN +I+IE+L+EYI GPDFPT   I+  R  I+++YR 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYVDNEDITIEELMEYITGPDFPTAA-IINGRRGILDAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RA+  +E +   G   I+VTEIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKIYIRAQADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++  +F  + M+  F +NM  L     P+++ L  I+  +
Sbjct: 296 SDKDGMRIVVEIKRDAVGEVVLNHLFSQTQMQVSFGINMVAL-HQGQPKLLNLKEIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID +I +IR    P           
Sbjct: 355 IRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQP 414

Query: 416 -----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
                                        V   ++ LTE Q  AIL+LRL+ L  LE  +
Sbjct: 415 WDLGSVSAMLERAGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEK 474

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           +  E   LL +  ++  +L S ++  + I  E+  +K  ++       RRT   E +   
Sbjct: 475 LLDEYRELLLQIAELLHILRSPERLMDVIREELTAIKTQYNDP-----RRTEITENTAD- 528

Query: 507 KATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAH 558
                + +I +E + V +S++G+          + +      SA   KE D +   L A+
Sbjct: 529 --INIEDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVAN 586

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCK 613
           T D IL  S+ G+ Y +    L        G  I  L+ L  ++ I        Y+    
Sbjct: 587 THDTILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQDERITAILPVREYEEGKF 646

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLI 672
           + + ++ G        +       G   + ++  +++  V    G +   +   + K++ 
Sbjct: 647 VFMATASGTVKKTPLQDFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVR 706

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           F+ + +  M R   GVR     D      +     EG   +      Y +          
Sbjct: 707 FAEECVRPMGRTATGVRGMKLVDDDKVVSLIIPRGEGD-ILTVTENGYGKRTVQSEYPTK 765

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            R   G +  K   R+GK + +
Sbjct: 766 NRATQGVISIKVSERNGKVVGA 787



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S  + A++  +GD L        ++  +L S DGK        +         ++ +
Sbjct: 666 RPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVRFAEECVRPMGRTATGVRGM 725

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKM 650
             L  +  +V+  +      +L V+  G      +SE     R   G   +KVS    K+
Sbjct: 726 -KLVDDDKVVSLIIPRGEGDILTVTENGYGKRTVQSEYPTKNRATQGVISIKVSERNGKV 784

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
              ++V   D + ++     L+   + ++  + R  +GV L    +  +  
Sbjct: 785 VGAIQVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEDELVV 835


>gi|313894729|ref|ZP_07828290.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976638|gb|EFR42092.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 815

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/752 (33%), Positives = 389/752 (51%), Gaps = 13/752 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  V  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM   G+    
Sbjct: 4   NFGEGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTK 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGDSAAA R
Sbjct: 64  PYKKSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM++++EL+L+ +D++ VDF D Y+  + EP V P+KFP LL NGT+GIAVGMAT+
Sbjct: 124 YTEVRMSKISELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATN 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L LIDNP+ ++E+L+  I GPDFPT G ++   E I ++Y  GRG  
Sbjct: 184 IPPHNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAG-LILGTEEIRKAYTTGRGVI 242

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RAR  +E +  G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES     
Sbjct: 243 KMRARAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++  ++  + ++  F + M  L     P +M L  +L  +++H+  
Sbjct: 303 RIVIELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVD-GQPVIMNLRSVLGHYISHQET 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ + +   + R  IL+GL IA  ++D +I  IR        +  ++  F LTE Q
Sbjct: 362 VITRRTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMEGFKLTEKQ 421

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+LRL+ L  LE  +I+ E   +LA  E+  S+L    +    I  E+ EV++ + 
Sbjct: 422 AQAILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILADRNKVLAIIKNELIEVRDKYG 481

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                           +   A     +       +        R  +   V +  +  KE
Sbjct: 482 DERRTEITFDASEMDIKDLIAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKGMGTKE 541

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D +   L   T   IL  +  G+A+ L A  +       +  AI  L+ +  ++ I   
Sbjct: 542 TDVVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADERITAV 601

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-V 661
                +     L + + KG       +E     + G   + +  ++++  V    G++ +
Sbjct: 602 IQVREFKPDRFLFLGTRKGVVKKTPLAEFANIRKSGLRAVNLDEDDELIGVKFTDGENRI 661

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +     K + F  D +  M R  +GVR  +  DG     +   +  G   +      Y 
Sbjct: 662 MLGTRLGKAITFPEDGVRSMGRIARGVRGITLSDGDEVVAMDI-LKSGSEVLTVTEGGYG 720

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +           RGG G +  K   ++G  + 
Sbjct: 721 KRTAADEYRTQTRGGKGLINMKVTEKTGPVVG 752



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 5/114 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L+   ++V   +  S  ++L V+  G        E    TR GK  + +   EK   +
Sbjct: 691 ITLSDGDEVVAMDILKSGSEVLTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTEKTGPV 750

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  V G   + ++     ++  ++D+I  +SR  +GV+L +  +      + 
Sbjct: 751 VGIRVVRGSQELMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASMA 804


>gi|260598668|ref|YP_003211239.1| DNA gyrase subunit A [Cronobacter turicensis z3032]
 gi|260217845|emb|CBA32359.1| DNA gyrase subunit A [Cronobacter turicensis z3032]
          Length = 878

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/793 (33%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  +D++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTSA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARAEVEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMALKEILAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARERAHILEGLAIALANIDPIIELIRRAPNPSEAKAGLIAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGTVSAMLERAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +G     +     EG   + +    Y +           R   G + 
Sbjct: 715 GRTATGVRGIRLGEGDSVVSLIVPRGEGA-ILTATQNGYGKRTAVEEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTDRNGPVVGA 786



 Score = 44.4 bits (103), Expect = 0.084,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R +   +  +  +   EGDS+   +       IL  + +G
Sbjct: 692 DEVMLFSAQGKVVRFKEDAVRPMGRTATGVRGIRLGEGDSVVSLIVPRGEGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +   + N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVEEYPTKSRATKGVISIKVTDRNGPVVGAVQVDDADQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|332971210|gb|EGK10173.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Desmospora sp. 8437]
          Length = 813

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/759 (31%), Positives = 402/759 (52%), Gaps = 29/759 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E+ +  +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M E+G+     
Sbjct: 2   PEEQRINEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYTMHELGMTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA +VG V+   HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGDS AA RY
Sbjct: 62  YRKSANVVGNVLASYHPHGDGAVYDTMVRMAQDFSYRYMLVDGHGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM  +   +L+ ++++ +DF   Y+    EPVV P++FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEARMAPITRELLRDIEKETIDFTPNYDGRLEEPVVLPARFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  LA+I NPEI+I++L+E+I GPDFPT G ++  R+ I ++YR GRG  +
Sbjct: 182 PPHNLTEVIDGLLAMIQNPEITIDELMEHIKGPDFPTAG-LILGRDGIKKAYRTGRGSIK 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           ++A+  +EE   G   IVV E+PYQV K++L+EKIAEL+  K+I  + D+RDES  +   
Sbjct: 241 MQAKTRIEEANNGKMRIVVEELPYQVNKAKLVEKIAELVRDKKIDGITDLRDESDRNGMR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R ++P +L+ +++  ++++T F +NM  L     P V+ L  +L  +L H+ EV
Sbjct: 301 VIIELRRDVNPKVLLNNLYKQTNLQTSFGVNMLALVD-GKPLVLNLKQVLHHYLEHQVEV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++  + R  IL+GL IA  +IDE+I +IR     +      + +F L++ Q 
Sbjct: 360 IRRRTQFDLRKAEERAHILEGLRIALDHIDEVIELIRGSRTTQEARDGLMEKFGLSDKQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  +I++E D LL    ++ ++L S ++    +  E+ EV++ +  
Sbjct: 420 QAILDMRLQRLTGLEREKIETEYDELLKTIAELKAILASEEKIRGVVRDELTEVRDKYGD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                 RR+              + +I ++ +T+++++RG+I+ +        +     +
Sbjct: 480 E-----RRSRI---MLNTGDIADEDLIPEDEVTILMTHRGYIKRMLLSGYRAQRRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNH 598
           S +  +E D ++     ++ + +L  S  GK Y + A  +        G  I  LI ++ 
Sbjct: 532 SGMGTREDDFVQHLFVTNSHNYLLFFSNKGKVYRMKAYEVPELSRTARGTPIINLIQIDQ 591

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + I        +     L   +  G        E     R G   + +   +++  V  
Sbjct: 592 GEYIEAVIPVREFSPDSYLFFGTKFGVVKKTPLEEFGHIRRNGLFAINLREGDELVGVRL 651

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+  + +       + F    + +M R   GV+  +         +     E    + 
Sbjct: 652 TDGEQEIMLGTRRGMSIRFPEQDVRQMGRTATGVKGIALGKDDEVVGMEVVDPERE-VVV 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +           RGG G          G  + 
Sbjct: 711 VTSKGYGKRTPLSEYRTQSRGGKGIKAQNVTKTKGHVVG 749



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 L A++ +EGD L           I+L +  G +   P  ++         +   
Sbjct: 629 HIRRNGLFAINLREGDELVGVRLTDGEQEIMLGTRRGMSIRFPEQDVRQMGRTATGV-KG 687

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKM 650
           I L  + ++V   V D   +++VV+SKG       SE    +R GK         ++  +
Sbjct: 688 IALGKDDEVVGMEVVDPEREVVVVTSKGYGKRTPLSEYRTQSRGGKGIKAQNVTKTKGHV 747

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  V+  + + +V ++  ++  +ID I  M R  +GV+L S K       + 
Sbjct: 748 VGLKVVSPDEDLMIVTDSGVVIRMNIDGISRMGRYAQGVKLISVKQDEEVASLA 801


>gi|238920518|ref|YP_002934033.1| DNA gyrase subunit A [Edwardsiella ictaluri 93-146]
 gi|238870087|gb|ACR69798.1| DNA gyrase, A subunit, putative [Edwardsiella ictaluri 93-146]
          Length = 878

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 386/793 (48%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG++GIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  I+IE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRAR  +E +       IVV EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYVRARAEIEVDDKNSRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + M+  F +NM  L     P+++ L   L+ +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQMQVSFGINMVAL-HQGQPKLLTLKECLEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA +NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARGRAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WALGNVAAMLARAGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +   +  +L S ++    I  E+  ++E F  +        T         
Sbjct: 475 LDEYKALLEQIAALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 EQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  ++ I        Y     + + ++ G 
Sbjct: 595 SRGRMYWMKVYQLPEASRGARGRPIINLLPLEADERITAILPVREYAEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G D V +     K++ F  D +  M
Sbjct: 655 VKKTALAEFSRPRAAGIIAVNLNDGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +  +        R   G + 
Sbjct: 715 GRTATGVRGIKLAGDDRVVSLIVPHGEGA-ILTVTQNGYGKRSSVAEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 54/158 (34%), Gaps = 6/158 (3%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
             + M+      VV      +R++   +  +  +     D +   +  H    IL ++ +
Sbjct: 691 NDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDRVVSLIVPHGEGAILTVTQN 750

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G           +     + +  +     N  +V A   + + ++++++  G       S
Sbjct: 751 GYGKRSSVAEYPTKSRATQGVISIKVTERNGSVVGAVQVEDSDQIMMITDAGTLVRTRVS 810

Query: 630 EIIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           E+    R   G   ++ + +E +      V  V  + +
Sbjct: 811 EVSIVGRNTQGVILIRTAEDEHVVGLQRVVEPVDDEDL 848


>gi|108802862|ref|YP_642799.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941]
 gi|108764105|gb|ABG02987.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941]
          Length = 852

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/754 (33%), Positives = 387/754 (51%), Gaps = 14/754 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                N++  S+   +   +L+YA+S I  RA+PD+RDG KPVHRR+++AM ++GL    
Sbjct: 3   DTFSGNIQPHSIEDEIRSSFLSYAMSVIVSRALPDVRDGLKPVHRRVLYAMHDLGLQPNR 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++KSA +VGEVIGK HPHGD +VYD+LVRLAQ F  R+PL+ GQGNFG++DGD AAA R
Sbjct: 63  PYRKSATVVGEVIGKYHPHGDAAVYDTLVRLAQDFSMRHPLVDGQGNFGSVDGDPAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+T++A  +L+ ++ D V+F   ++E   EP V P++FPNLL NG  GIAVGMAT 
Sbjct: 123 YTEARLTRIATEMLRDINADTVNFVPNFDESQREPEVLPARFPNLLVNGADGIAVGMATK 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A +ALI++PE+  E L  YI GPDFPTGGI+V     I E+ R GRG  
Sbjct: 183 IPPHNLGEVIDATVALIEDPELDDEGLARYIKGPDFPTGGIVV-GTRGIREAIRTGRGSV 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RVRA+   E++      IVVTE+PYQV K++L++KIAEL+  ++I  + D+RDES     
Sbjct: 242 RVRAKAHTEQIKGNRTQIVVTELPYQVNKAQLLQKIAELVKDRKISDIADLRDESDRGGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ ++F  + M+  F +N+  L    VP+ +     L+ ++AH+ E
Sbjct: 302 RIVIELKREAVPKVVLNNLFKHTQMQQSFGVNLVALVD-GVPKTLSYKEALRHYIAHQFE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQ 427
           V+ RR+   +     R  IL+GLLIA  N+DE++  IR     +    +   RF L+E Q
Sbjct: 361 VVTRRTRHELGRARARAHILEGLLIALSNLDEVVETIRRSRNVETARRNLVKRFRLSERQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+LRL+ L  LE  +++ +  +L+ + E ++ +L    + +  I  E+ E+K  ++
Sbjct: 421 AQAILDLRLQRLTALERRKVEQDHRDLVEKIEYLEGVLADESKVYGIIREELLEIKAAYA 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-SVDLSALHFK 546
                        E    D    ++ +I       + S        +    V ++ +  K
Sbjct: 481 DERRTAITAQEGAEFEVEDLIAEEEMVISISHEGYLKSVPIGSFRKQGRGGVGVAGMELK 540

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           EGD ++      T   +L  +  GK Y L    L       +   +  L+ L   + I  
Sbjct: 541 EGDYIEHLFITTTHHYMLFFTNRGKVYRLKVHQLPRMGRAAKGRHVANLLPLAPGERIAA 600

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKV-TGD 659
                 +D    LL  + +G        +     +  G   +K++  +++  V      D
Sbjct: 601 VISTRDFDEAEYLLFATRRGMVKKTPFRDYNTPLKNEGIIAIKLAGGDELIAVRHASDED 660

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V  V  + K L F    +  M R   GV+  + K       +     E         + 
Sbjct: 661 EVVFVTRDGKGLRFRQGDVRPMGRATAGVKGITLKGDDALLSMDVVSDEAADLFMVTEKG 720

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + +           RGG G +  K     GK   
Sbjct: 721 FGKRTAISEFRPQGRGGQGVIAMKVNGERGKIAG 754



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 8/192 (4%)

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           +V        +    +  + A+    GD L    HA   D ++ ++ DGK      G++ 
Sbjct: 621 MVKKTPFRDYNTPLKNEGIIAIKLAGGDELIAVRHASDEDEVVFVTRDGKGLRFRQGDVR 680

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-- 638
                  A    I L  +  +++   V D    L +V+ KG       SE     R G  
Sbjct: 681 PMG-RATAGVKGITLKGDDALLSMDVVSDEAADLFMVTEKGFGKRTAISEFRPQGRGGQG 739

Query: 639 KTFLKVS-SEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
              +KV+    K+  V  V      + +V      +    D +P   R  +GVR+ + ++
Sbjct: 740 VIAMKVNGERGKIAGVQVVRPGLHELVIVSNMGTTIRIDSDSVPRQGRAAQGVRVMNLRE 799

Query: 695 GGISDVICFKIC 706
           G     +   + 
Sbjct: 800 GDSVSALAKVVS 811


>gi|156933159|ref|YP_001437075.1| DNA gyrase subunit A [Cronobacter sakazakii ATCC BAA-894]
 gi|156531413|gb|ABU76239.1| hypothetical protein ESA_00969 [Cronobacter sakazakii ATCC BAA-894]
          Length = 878

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/793 (33%), Positives = 392/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  +D++ VDF D Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARAEVEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMTLKEILAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARERAHILEGLAIALANIDPIIELIRRAPTPSEAKAGLIAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGTVSAMLERAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +G     +     EG   + +    Y +           R   G + 
Sbjct: 715 GRTATGVRGIRLGEGDSVVSLIVPRGEGA-ILTATQNGYGKRTAVEEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTDRNGPVVGA 786



 Score = 44.4 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R +   +  +  +   EGDS+   +       IL  + +G
Sbjct: 692 DEVMLFSAQGKVVRFKEDAVRPMGRTATGVRGIRLGEGDSVVSLIVPRGEGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +   + N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVEEYPTKSRATKGVISIKVTDRNGPVVGAVQVDDADQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|150387860|ref|YP_001317909.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF]
 gi|149947722|gb|ABR46250.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF]
          Length = 830

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/751 (31%), Positives = 405/751 (53%), Gaps = 13/751 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++N+  +++   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E+G+      
Sbjct: 4   NKDNIVPINIESEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGVTPDKPH 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD +VYD++VRLAQ F  RY L+ G GNFG++DGD AAA RYT
Sbjct: 64  KKSARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYLLVDGHGNFGSVDGDGAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++ ++++ VD+R  ++E   EP V PS+FPNLL NG++GIAVGMAT+IP
Sbjct: 124 EARLSKISVEMIRDINKETVDYRPNFDETLKEPAVLPSRFPNLLVNGSNGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ ++ + LID+ E  IE  +E+I GPDFPTGGII+   E I ++Y  GRG  +V
Sbjct: 184 PHNLGEVIDSVVTLIDDSEAEIEDFMEHIKGPDFPTGGIIL-GTEGIKDAYTTGRGKIKV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE+ +G   I+V EIPYQV K+RLIEKIAEL+  K+I  + D+RDES  +   +
Sbjct: 243 RAKASIEEMSKGRQHIIVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDREGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++  ++  + +E  F + M  +     P+V+ L  +L  +L H+++++
Sbjct: 303 VIELKRDANANVVLNKLYKHTQLEDTFGVIMIAIVD-GQPKVLNLKEVLTHYLNHQKDII 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
            RR+ F +   + R  IL+GL IA  N+DE+I +IR  D  +     ++ +FSL+E Q  
Sbjct: 362 VRRTKFDLNKAEDRAHILEGLKIALDNLDEVIKLIRGSDNTQIAKAGLMEKFSLSEKQAQ 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +++ E   L+     +  +L + +   + I  E+ E++E ++  
Sbjct: 422 AILDMRLQKLTGLEIEKVEEEYKELIKIINHLKEILANERLLLDIIKEELLEIREKYADK 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                                   +       +        RS K     +S +  ++ D
Sbjct: 482 RRTEIAIDPGSINMIDLVDEEDVVITLTHFGYIKRLPIDTYRSQKRGGKGISGVTTRDED 541

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV 607
            ++      T   +L  +  GK Y L    +  GR   +  AI  L+ L+ N+ I     
Sbjct: 542 FVEKLTITSTHSPLLFFTNLGKVYKLNVYEIPEGRRQAKGTAIVNLLQLSANEKIAAVIP 601

Query: 608 YD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAV 663
            D   +   L++ + KG     E  +     + G   + +  ++++  V  +     + +
Sbjct: 602 VDRDCNEQYLVMATQKGIIKKTELCQFDNTRKTGLMAINIREDDELISVRLINKEQEIFM 661

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           +      + F  D + +M R   GV+  +  +      +   + +    +  +     + 
Sbjct: 662 ITSQGMSIRFKEDNVRDMGRTAMGVKGINLAEKDYVVAMEV-LEDNKDLLVVSENGLGKR 720

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     L  RGG G    K   ++G  + +
Sbjct: 721 TDLSEYRLQTRGGKGIKTYKVSKKTGNLIGA 751



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 66/211 (31%), Gaps = 6/211 (2%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
                +  +       +I      +   +    L A++ +E D L      +    I ++
Sbjct: 603 DRDCNEQYLVMATQKGIIKKTELCQFDNTRKTGLMAINIREDDELISVRLINKEQEIFMI 662

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           ++ G +      N+         +   I+L     +V   V +    LLVVS  G     
Sbjct: 663 TSQGMSIRFKEDNVRDMGRTAMGV-KGINLAEKDYVVAMEVLEDNKDLLVVSENGLGKRT 721

Query: 627 EESEIIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
           + SE    TR GK             +     V   D + ++     ++  ++  I +M 
Sbjct: 722 DLSEYRLQTRGGKGIKTYKVSKKTGNLIGAKIVEDHDEILLMTNEGIVIRLNVKGISKMG 781

Query: 683 RG-KGVRLQSYKDGGISDVICFKICEGLTWI 712
           R  +GV L +         I          I
Sbjct: 782 RATRGVTLMNTGTEKSIVSIAQIPYHEEVII 812


>gi|126652000|ref|ZP_01724192.1| DNA gyrase subunit A [Bacillus sp. B14905]
 gi|126591269|gb|EAZ85378.1| DNA gyrase subunit A [Bacillus sp. B14905]
          Length = 821

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/761 (32%), Positives = 411/761 (54%), Gaps = 28/761 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +      VK +++   +E  +L YA+S I  RA+PD+RDG KPVHRRI++ M E+G    
Sbjct: 2   SEQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTAD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE+RM+++A  +L+ +++D +D+ D Y+  + EP+V PS++PNLL NG +GIAVGMAT
Sbjct: 122 RYTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP H++ E  +A +AL +NP I+ E+L+E I GPDFPTGG ++  R  I  +Y  GRG 
Sbjct: 182 NIPPHHLGETIDAVIALSENPAITTEELMEIIPGPDFPTGG-LILGRSGIRRAYESGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  +E+   G   I+V E+PYQV K++LIEKIAEL+  K+I  + ++RDES    
Sbjct: 241 IIIRAKVEIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  + ++++ +++  + M++ F +NM  L     P+V+ L  +L  +L H++
Sbjct: 301 MRVVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLV-NGQPKVLGLKEMLYHYLEHQK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
            ++ RR+ F ++  + R  IL+GL IA  +IDEIIAIIR      + KP ++ RF+L+E 
Sbjct: 360 VIIRRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMERFNLSER 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +I++E   L     ++ ++L    +  + I  EI E+K+ +
Sbjct: 420 QAQAILDMRLVRLSGLEREKIEAEYQELQVLIAELKAILADEAKIVDIIRTEILELKDRY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           S       RRT              + +I  E   V +++ G+I+          K    
Sbjct: 480 SD-----IRRTEITSGGIEM--IEDEDLIPVENSVVTLTHNGYIKRLAANTYRSQKRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  +   E D ++  ++  T D IL  ++ GK +      +       +   I  L+++
Sbjct: 533 GVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPEYGRTAKGLPIVNLLNI 592

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  + +        +D     +  +  G       S+       G   + +  ++ +  V
Sbjct: 593 DKGEKVTAMIRVGSFDEDAYFIFTTKTGITKRTPVSQFANIRTNGLIAISLREDDDLISV 652

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
               GD  + +   +  L+ F  D I  M R   GVR    +DG     +   +  G   
Sbjct: 653 RLTDGDKQIIIGTRDGMLVRFQEDDIRSMGRTAGGVRGIKLRDGDEVVGMEI-VEPGQEI 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    + Y +  ++    L  RGGVG    +   ++G  ++
Sbjct: 712 LVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKNGPMVA 752



 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L    ++V   + +   ++LVV+ KG      E +    +R G     +   +K   M
Sbjct: 691 IKLRDGDEVVGMEIVEPGQEILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKNGPM 750

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             V  V G + + ++  N  L+   ++ I  + R  +GVRL    D  +   + 
Sbjct: 751 VAVKTVDGSEDLMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDEELVATVA 804



 Score = 37.4 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 2/143 (1%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +V      IRS+   +  +  +  ++GD +           IL+++  G      
Sbjct: 665 TRDGMLVRFQEDDIRSMGRTAGGVRGIKLRDGDEVVGMEIVEPGQEILVVTEKGYGKRTS 724

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +       G  ++ +   + N  +V     D +  L++++  G    ++ ++I    R
Sbjct: 725 EDDYRLQSRGGVGLKTMQITDKNGPMVAVKTVDGSEDLMLITINGMLIRMDVNDISLIGR 784

Query: 637 K--GKTFLKVSSEEKMKLVVKVT 657
              G   +++  EE +  V KV 
Sbjct: 785 STQGVRLIRLGDEELVATVAKVE 807


>gi|332980612|ref|YP_004462053.1| DNA gyrase subunit A [Mahella australiensis 50-1 BON]
 gi|332698290|gb|AEE95231.1| DNA gyrase subunit A [Mahella australiensis 50-1 BON]
          Length = 809

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/761 (31%), Positives = 415/761 (54%), Gaps = 29/761 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
               +  V  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL   
Sbjct: 2   PEEEQTKVIEVNLEEEMKHSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLMPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++KSARIVG+V+GK HPHG+ +VYDS+VR+AQ F  RYPL+ G GNFG+ID D  AA 
Sbjct: 62  KPYRKSARIVGDVLGKYHPHGEAAVYDSMVRMAQDFSMRYPLVDGHGNFGSIDNDPPAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++A  +L  +D++ VDF   ++E   EPVV PS+FPNLL NG++GIAVGMAT
Sbjct: 122 RYTEARLSRLAMEMLTDIDKETVDFIPNFDETLKEPVVLPSRFPNLLVNGSAGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN++E  +AA+ +ID+P+ISI++L++ + GPDFPTGG I+  R+ I ++Y  GRG 
Sbjct: 182 NIPPHNLKETIDAAIKVIDDPDISIDELMKTLKGPDFPTGG-IIMGRDGIKQAYHTGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VR +  +E +  G   I+VTEIPYQV K+ L+ +IA L+  K+I  + DIRDES ++ 
Sbjct: 241 IKVRGKTSIEPLPGGRSRIIVTEIPYQVTKADLVVQIANLVKDKKIDGIADIRDESDKEG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + +E  F + M  L     P+V+ +  +   ++ H++
Sbjct: 301 MRIAIDLKRDVNPNVVLNLLYKHTRLEDTFGIIMLALVD-NQPKVLNIKQMFYYYIDHQK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTEN 426
           +V+ RRS + ++  + R  IL+GL IA  +ID I+A+IR+    +     ++S+F+L++ 
Sbjct: 360 DVIVRRSRYDLEKAEARAHILEGLRIALDHIDAIVALIRSSKTDQIAKEALMSQFNLSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E   L++  E +  +L+     +  I  E++ ++  +
Sbjct: 420 QAQAILDMRLRRLTGLERDKIEEEYAQLMSTIEYLRRVLSDEGMVYKIIKDELKTIRNKY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT     +   +    + +I+ E + + +++ G+I+          +    
Sbjct: 480 GD-----DRRTQISSKADEME---IEDLIQDEEVAITLTHFGYIKRLPLDTYKSQRRGGK 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            ++ +  ++ D ++      T   +L  +  GK Y + A ++       +  AI  L++L
Sbjct: 532 GITGMQTRDEDFVEHIFVTSTHSYMLFFTNKGKVYMMRAYDVPEAGRQAKGTAIINLLNL 591

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  + I         D    L++ + +G        E     + G   + +   +++  V
Sbjct: 592 SGGEKISAVIPIRHIDDEKYLIMTTREGYIKKTSIEEYDNIHKNGLMAIGLGEGDELIGV 651

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
               G+  V +  +    + F  D +  M R  +GV+      G     +   + E    
Sbjct: 652 ELTNGENEVIISTKEGMAIRFPEDDVRSMGRTARGVKAIKLNQGDKVIDMEL-VDESADL 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +   Y +           RGG G +  K   ++G   +
Sbjct: 711 LMVSENGYGKRTPLKEYRSQSRGGKGIITMKITEKTGPLAA 751



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 6/207 (2%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           +    +  +        I           H   L A+   EGD L      +  + +++ 
Sbjct: 604 RHIDDEKYLIMTTREGYIKKTSIEEYDNIHKNGLMAIGLGEGDELIGVELTNGENEVIIS 663

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G A   P  ++ S       +   I LN    ++   + D +  LL+VS  G     
Sbjct: 664 TKEGMAIRFPEDDVRSMGRTARGV-KAIKLNQGDKVIDMELVDESADLLMVSENGYGKRT 722

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMS 682
              E  + +R GK  + +   EK   +  +  V   D + +V  +  ++   +  IP   
Sbjct: 723 PLKEYRSQSRGGKGIITMKITEKTGPLAAIKVVHEDDEIMMVTSDGIIIRLEVKGIPVQG 782

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R  +GV L   ++G     +     E 
Sbjct: 783 RNTQGVTLMKVENGQRIVSLAKFESED 809


>gi|269837749|ref|YP_003319977.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745]
 gi|269787012|gb|ACZ39155.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745]
          Length = 836

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/748 (34%), Positives = 396/748 (52%), Gaps = 13/748 (1%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ + +   +   YL YA+S I +RA+PD+RDG KPV RRI++AM EMGL   + F+KSA
Sbjct: 6   VRQIDIDVEMRRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYAMHEMGLRPQSRFRKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGEV+   HPH D +VYD+LVR+ QPF  RYPL+ GQGNFG++DGDSAAA RYTEA++
Sbjct: 66  GIVGEVLKLYHPHSDSAVYDALVRMVQPFSLRYPLVEGQGNFGSVDGDSAAAMRYTEAKL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++E +LQ +D++ VDF+  Y+ E  EPVV P+K PNLL NG +GIAVGMAT+IP HN+
Sbjct: 126 AAISEEMLQDIDKNTVDFKPNYDGEAQEPVVLPAKLPNLLVNGAAGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+  + LIDNPE + + LLE I GPDFPTGG+I+  RE I  +Y  G+G   +RAR 
Sbjct: 186 AEVCDGLIMLIDNPEATSDDLLEVIQGPDFPTGGVIL-GREGIRAAYATGKGRVVIRART 244

Query: 257 CVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +EE+ RG+ + I+VTE+PYQV K+ L+EKIAEL+ A RI  + D+RDES      ++  
Sbjct: 245 HIEEMPRGNRYQIIVTELPYQVNKAALLEKIAELVKAGRIEGIHDLRDESDRTGMRMVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P  ++ ++F  + ++  F +NM  L  G  P+V+ L  +L+ +L HR+EV+ RR
Sbjct: 305 LKRDAQPQRVLNALFKHTQLQQTFGVNMLALVDGTQPRVLTLRRLLQLYLDHRQEVVRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           +   +    RR  IL+GL IA  ++DE+I  IR        +  +++RF  TE Q +AIL
Sbjct: 365 TEHELGRARRRAHILEGLKIALDHLDEVIQTIRQSQTIESARTNLINRFGFTEVQANAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++LR L  LE ++I++E  +LL E   ++ LL    +    I  E+ ++++ F      
Sbjct: 425 DMQLRRLAALERHKIENEYRDLLKEIAGLEELLADPAKILAVIREELVQLRDKFGDERRT 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             +  +           +   ++      V     G  R        ++ +  +E D + 
Sbjct: 485 LIQDVSGEITDEDLIPDVSVLVMITNRGYVKRIADGTYRQQHRGGRGVTGMTLREEDGVH 544

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
             + A T D +L  +  G+ + L    L        G  +  LI +   + I        
Sbjct: 545 RIVAARTHDSLLFFTDRGRVFQLKVWELPDSGRTARGIPVINLIGIEPGETITALLPVRD 604

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           + S   L + +  G        +  +    G   + +   +++  V   +G D + +V E
Sbjct: 605 FASARYLFMCTRNGRVKRTRLDQFASVRSSGLIAIGLEEGDELAWVRLTSGNDELILVTE 664

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             + + F    +  M R   GV     + G           +    +  +   Y +    
Sbjct: 665 QGQAIRFKETDVRPMGRPAAGVIGIRMEPGDRVIAAEVVQPD-QDLLVVSANGYGKRTAL 723

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +  RGG G    K   R+G   ++
Sbjct: 724 SEFRVQGRGGQGVTAMKITERNGPVAAA 751



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 13/229 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E      A L            + +  G ++  +           L A+  +EGD L  
Sbjct: 590 IEPGETITALLPVRDFASARYLFMCTRNGRVKRTRLDQFASVRSSGLIAIGLEEGDELAW 649

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  D ++L++  G+A      ++        A  + I +     ++ A V      
Sbjct: 650 VRLTSGNDELILVTEQGQAIRFKETDVRPMGRPA-AGVIGIRMEPGDRVIAAEVVQPDQD 708

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSEEKMKLV--VKVTGDHVAVVGENRK 669
           LLVVS+ G       SE     R G   T +K++          V    D + +V     
Sbjct: 709 LLVVSANGYGKRTALSEFRVQGRGGQGVTAMKITERNGPVAAARVVTDTDSIMLVSLRGM 768

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAG 716
           ++    +QI  + R  +GV +   ++   ++ V   +  E     D   
Sbjct: 769 VIRVPAEQISRIGRMTQGVSIMRLQEQDQVASVTVIRTPEDAEMADLEE 817


>gi|212635285|ref|YP_002311810.1| DNA gyrase subunit A [Shewanella piezotolerans WP3]
 gi|212556769|gb|ACJ29223.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3]
          Length = 897

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/807 (32%), Positives = 393/807 (48%), Gaps = 67/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RYPLI GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +VA  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI++P +SIE+L+E+I GPDFPT   IV  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVIAGCLALIEDPALSIEQLMEHIPGPDFPTAA-IVNGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR  VE    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRARADVETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAQGWELGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +  +++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 KGMLEKAGDDAARPEWLEPEFGIRDNKYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L+S ++    I  E+ EV E F                           
Sbjct: 480 LLEVIAALLLILSSPQRLMEVITEELHEVLENFGDKRRTVINANEVDMSLEDLINEEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +      +A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 540 VTLSHLGYAKYQALSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 599

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  L+ L+  + I        Y     +++ +S G       
Sbjct: 600 WLKVYQLPLASRTARGRPIVNLLPLSEGERITAILPVREYADDKYIIMATSHGTVKKTAL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID----------- 676
           +        G   + +   +++  V    G D + +     K++ F+             
Sbjct: 660 TAYSNPRANGIIAVNLKDGDQLIGVDITDGNDDIMLFSNEGKVVRFNEKARNAETGEVKI 719

Query: 677 ---------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
                     +  M R   GVR    +DG     +     +G   +      Y +     
Sbjct: 720 DPETGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPKEDGA-ILTVTENGYGKRTALS 778

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  K   R+G  + +
Sbjct: 779 EYPAKSRGTKGVVSIKVSERNGAVVGA 805


>gi|169825627|ref|YP_001695785.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41]
 gi|168990115|gb|ACA37655.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41]
          Length = 821

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/761 (32%), Positives = 411/761 (54%), Gaps = 28/761 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +      VK +++   +E  +L YA+S I  RA+PD+RDG KPVHRRI++ M E+G    
Sbjct: 2   SEQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTAD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE+RM+++A  +L+ +++D +D+ D Y+  + EP+V PS++PNLL NG +GIAVGMAT
Sbjct: 122 RYTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP H++ E  +A +AL +NP I+ E+L+E I GPDFPTGG ++  R  I  +Y  GRG 
Sbjct: 182 NIPPHHLGETIDAVIALSENPAITTEELMEIIPGPDFPTGG-LILGRSGIRRAYESGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  +E+   G   I+V E+PYQV K++LIEKIAEL+  K+I  + ++RDES    
Sbjct: 241 IIIRAKVEIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  + ++++ +++  + M++ F +NM  L     P+V+ L  +L  +L H++
Sbjct: 301 MRVVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLV-NGQPKVLGLKEMLYHYLEHQK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
            ++ RR+ F ++  + R  IL+GL IA  +IDEIIAIIR      + KP ++ RF+L+E 
Sbjct: 360 VIIRRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMERFNLSER 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +I++E   L     ++ ++L    +  + I  EI E+K+ +
Sbjct: 420 QAQAILDMRLVRLSGLEREKIEAEYQELQVLIAELKAILADEAKIVDIIRTEILELKDRY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           S       RRT              + +I  E   V +++ G+I+          K    
Sbjct: 480 SD-----TRRTEITSGGIEM--IEDEDLIPVENSVVTLTHNGYIKRLAANTYRSQKRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  +   E D ++  ++  T D IL  ++ GK +      +       +   I  L+++
Sbjct: 533 GVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPEYGRTAKGLPIVNLLNI 592

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  + +        +D     +  +  G       S+       G   + +  ++ +  V
Sbjct: 593 DKGEKVTAMIRVGSFDEDAYFIFTTKTGITKRTPVSQFANIRTNGLIAISLREDDDLISV 652

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
               GD  + +   +  L+ F  D I  M R   GVR    +DG     +   +  G   
Sbjct: 653 RLTDGDKQIIIGTRDGMLVRFQEDDIRSMGRTAGGVRGIKLRDGDEVVGMEI-VEPGQEI 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    + Y +  ++    L  RGGVG    +   ++G  ++
Sbjct: 712 LVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKNGPMVA 752



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L    ++V   + +   ++LVV+ KG      E +    +R G     +   +K   M
Sbjct: 691 IKLRDGDEVVGMEIVEPGQEILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKNGPM 750

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             V  V G + + ++  N  L+   ++ I  + R  +GVRL    D  +   + 
Sbjct: 751 VAVKTVDGSEDIMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDDELVATVA 804


>gi|85711597|ref|ZP_01042654.1| DNA gyrase subunit A [Idiomarina baltica OS145]
 gi|85694457|gb|EAQ32398.1| DNA gyrase subunit A [Idiomarina baltica OS145]
          Length = 879

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/797 (32%), Positives = 397/797 (49%), Gaps = 55/797 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   V  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+ 
Sbjct: 1   MSD----LAREVSPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELR 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            DF   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VDF D Y+  +  P V P+K PNL+ NG+SGIAV
Sbjct: 117 AAAMRYTEIRMEKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTKVPNLMVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LALIDNPEISIE+L+E+I GPDFPT   I   R  IVE+Y+ 
Sbjct: 177 GMATNIPPHNLTEVINGTLALIDNPEISIEELMEFIPGPDFPTAASIS-GRSGIVEAYKT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RA+  VE +   G   I+V+EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGRIHLRAKAEVEVDEKSGRESIIVSEIPYQVNKARLIEKIAELVKEKRLEGISGLRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++  ++  + M+  F +NM  L     P++  L  +L  +
Sbjct: 296 SDKDGMRIVIEIRRGDVGEVVLNHLYANTQMQVVFGINMVALDK-GQPKLFNLYQVLDAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RRS + ++    R  IL+GL I+  NIDE+I +IR    P           
Sbjct: 355 VRHRREVVTRRSVYELRKARERAHILEGLAISLANIDEVIELIRRSPTPAEAKQGLVARG 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LTE Q  AIL+LRL  L  LE  +I
Sbjct: 415 WQLGNVAAMLESAGVDAARPEHLPEEYGIRDGSYYLTEEQAQAILDLRLHKLTGLEHEKI 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL + E++  +L S ++    I  E+ E+++ F  +                  
Sbjct: 475 LDEYKGLLKQIEELLHILRSTERLMEVIREELVEIRDNFGDARKTEITAAAHDISMEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      +A   K+ D ++    A+T D IL  S
Sbjct: 535 NEEDVVVTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDDDFVERLWVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           T G+ Y +    L   S    G+ I  L+ L  ++ I        Y     +++ +  G 
Sbjct: 595 TRGRIYWMKVYQLPLASRASRGKPIVNLLPLESDERITAILPTRDYPEDKFVIMATKHGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
                  E       G   L ++  +++  V    G+  + +  +  K++ F  DQ+  M
Sbjct: 655 VKKTPLPEYSRPRNGGIIALNLNEGDELIGVDITDGEQEIMLFSDGGKVVRFREDQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICF----KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
            R   GVR    ++G     +      +  +    +      + +           R   
Sbjct: 715 GRTATGVRGIRLEEGQKVVSLIVPGTYEDEQQAAILTVTENGFGKRTLVEEYPTKSRATK 774

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  K   R+G  + +
Sbjct: 775 GVVSIKVSERNGAVVGA 791



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 17/217 (7%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E      A L      ++   ++ +  G ++              + AL+  EGD L 
Sbjct: 624 PLESDERITAILPTRDYPEDKFVIMATKHGTVKKTPLPEYSRPRNGGIIALNLNEGDELI 683

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YD 609
                     I+L S  GK        + S       ++  I L   Q +V+  V   Y+
Sbjct: 684 GVDITDGEQEIMLFSDGGKVVRFREDQVRSMGRTATGVRG-IRLEEGQKVVSLIVPGTYE 742

Query: 610 STCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAV 663
              +  +L V+  G        E    +R  K  + +     +   +  +  V G+ + +
Sbjct: 743 DEQQAAILTVTENGFGKRTLVEEYPTKSRATKGVVSIKVSERNGAVVGAMEVVDGNEIML 802

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           +     L+   ++++  + R  +GVRL    D     
Sbjct: 803 ISNKGTLVRTRVNEVSMVGRNTQGVRLIRTGDDEQVV 839


>gi|253698661|ref|YP_003019850.1| DNA gyrase subunit alpha [Geobacter sp. M21]
 gi|251773511|gb|ACT16092.1| DNA gyrase, A subunit [Geobacter sp. M21]
          Length = 836

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/747 (33%), Positives = 393/747 (52%), Gaps = 15/747 (2%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            +V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR + AM +M  D+   +KKSAR
Sbjct: 8   VSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSAR 67

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTE RM 
Sbjct: 68  VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRME 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           Q+A  +L  ++++ V +   Y++   EP+V PSKFPNLL NG++GIAVGMAT+IP HN+ 
Sbjct: 128 QLAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLT 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +  +A+IDNP+++ E+L+E I GPDFPTGG  +  RE I+++Y  GRG  ++RA+  
Sbjct: 188 EVIDGIVAVIDNPQLTFEELVELIPGPDFPTGG-FIYGREGIMKAYSTGRGIIQMRAKVQ 246

Query: 258 VE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           +E +       IVVTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES  +   ++   
Sbjct: 247 IETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRIVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  +P +L+  ++  + M++ F + M  +   R P+V+ L   +  ++ HR+E++ RR+
Sbjct: 307 KKDENPTILLNHLYKQTQMQSSFGIIMLAIVNSR-PRVLTLRETIDFFIEHRKEIVTRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  N+DE+IA+I+    P       + RF L++ Q  AIL+
Sbjct: 366 IFDLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMERFGLSDLQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +I  EL  +L    ++  +L S  +    I  E+ E+K+ F       
Sbjct: 426 MRLHRLTGLERDKIMEELREILKYIARLKEILASEAEILKIIVGELVELKDKFGDKRRSE 485

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
               T               +       +  +     R+ +      + +  KE D ++ 
Sbjct: 486 IVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTGMKTKEEDFVEQ 545

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS- 610
              A T D ++  +  GK Y L    +        G+AI  L++L  N+ I T       
Sbjct: 546 LFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGKAIVNLLNLAANEKITTILPVKEF 605

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGEN 667
                +++ +  G        E       G   + +   +K+  V    G   V +   N
Sbjct: 606 VDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLDEGDKLITVALTDGKQDVLLASAN 665

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE--GLTWIDSAGRSYNRSEN 724
            K + F  + +  + R  +GVR  + +D  +   +          T        Y +   
Sbjct: 666 GKAIRFKEEDVRTVGRVSRGVRGMTLEDEDVVIGMEILNENFTDSTIFTVTENGYGKRTE 725

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                   RGG G +  K   R+G  +
Sbjct: 726 ISEYRSQSRGGKGVITIKTTERNGNVV 752



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 73/196 (37%), Gaps = 10/196 (5%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+     +         + A++  EGD L           +LL S +GKA      ++ +
Sbjct: 619 VVKKTNMMEYSHPRVGGIIAVNLDEGDKLITVALTDGKQDVLLASANGKAIRFKEEDVRT 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                  ++ +  L     ++   + +       +  V+  G     E SE  + +R GK
Sbjct: 679 VGRVSRGVRGM-TLEDEDVVIGMEILNENFTDSTIFTVTENGYGKRTEISEYRSQSRGGK 737

Query: 640 TFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
             + + + E+   +  + +V  D  + ++ +  K+L   +     + R  +GVRL   K+
Sbjct: 738 GVITIKTTERNGNVVDIKQVNDDNDLMLITDQGKILRVPVAGFSIIGRNTQGVRLM-VKE 796

Query: 695 GGISDVICFKICEGLT 710
                V   ++ E   
Sbjct: 797 ENERVVAVARLAEKEE 812


>gi|57651114|ref|YP_184917.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL]
 gi|161508272|ref|YP_001573931.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|258451361|ref|ZP_05699392.1| DNA gyrase, A subunit [Staphylococcus aureus A5948]
 gi|81695633|sp|Q5HJZ0|GYRA_STAAC RecName: Full=DNA gyrase subunit A
 gi|57285300|gb|AAW37394.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL]
 gi|160367081|gb|ABX28052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|257860891|gb|EEV83708.1| DNA gyrase, A subunit [Staphylococcus aureus A5948]
 gi|315197924|gb|EFU28257.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320141423|gb|EFW33266.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144406|gb|EFW36171.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 887

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLT 710
           +   
Sbjct: 813 DAED 816



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|219666077|ref|YP_002456512.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219536337|gb|ACL18076.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2]
          Length = 828

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/764 (34%), Positives = 427/764 (55%), Gaps = 30/764 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +    +  + +   L++ ++ Y++S I  RA+PD+RDG KPVHRRII+ + E+G+  
Sbjct: 2   STEIQGGKILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VG+ +GK HPHGD S+YD++VRLAQ F  RYPLI G GNFG++DGDSAAA
Sbjct: 62  NKPYSKSARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM ++ + +L  +D+D VDF+  Y+E + EP V P+KFPNLL NG++GIAVGMA
Sbjct: 122 MRYTEARMAKITQYMLADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ E  +A IDNPEI I++L+ YI GPDFPTG  I    E I+ +YR G+G
Sbjct: 182 TNIPPHNLTEVIEGTIAQIDNPEIEIKELMNYIKGPDFPTGASI-MGTEGIISAYRTGKG 240

Query: 249 GFRVRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            FR RA+  VEE+   G   I+VTEIPY V K+RL+EKIAEL+  KRI  + D+RDES  
Sbjct: 241 SFRTRAKAHVEEMEKSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDR 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++    R ++P +L+  ++  + ME  F +N+  L     P+V+ L  I+  ++ H
Sbjct: 301 TGMRIVMELRRDVNPQVLLNQLYKHTQMEESFGVNILALVD-GQPKVLNLKQIIHYFIEH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           +++V+ RR+ F +   +    IL+GL IA   IDE+I+IIR     +     ++SRF L+
Sbjct: 360 QKDVIVRRTRFELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSRFGLS 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AI+++RL+ L  LE  +I+ +   +      + ++LNS +   N I  E++EVKE
Sbjct: 420 DKQSQAIVDMRLKRLTGLEREKIEEQYQKIQETIAYLKAVLNSEQMVLNIIKQELQEVKE 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------ 538
            F        RRT   E+S        + +I+ E + + +S+RG+I+ +  ++       
Sbjct: 480 KFGDE-----RRT---EISFDATHMNIEDLIDDEEVVITMSHRGYIKRMPLNTYKSQRRG 531

Query: 539 --DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  +  +E D ++      T   IL  +T GK Y L A  +      G+  A+  L+
Sbjct: 532 GKGVHGMATREEDFVEKIFTTSTHQYILFFTTRGKVYRLKAHEIPEAGRTGKGTALVNLL 591

Query: 595 DLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            +N +++ +TA +    Y+    L + + KG        E  +  + G   + +S ++++
Sbjct: 592 SINPSEEKITAVLSIRKYNEDFHLFMATRKGIVKKTLLKEYDSPRKDGLIAISLSGDDEL 651

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             V      +H+ +  +N   + F    + +M R   GV+  S +   +   +     E 
Sbjct: 652 IDVRLTKPDEHIIIATKNGLCIRFLESDVRQMGRTAHGVKGISLEKEDLVVSMDVIYEEE 711

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +      +++  +     +  RGG G +  K   ++GK + 
Sbjct: 712 AEILSMTELGFSKRTSLSEYRVQGRGGKGIIATKLNAKTGKLVG 755



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 64/212 (30%), Gaps = 7/212 (3%)

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
           + +   +   +       ++               L A+     D L         + I+
Sbjct: 605 SIRKYNEDFHLFMATRKGIVKKTLLKEYDSPRKDGLIAISLSGDDELIDVRLTKPDEHII 664

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA-FVYDSTCKLLVVSSKGNA 623
           + + +G        ++             I L     +V+   +Y+   ++L ++  G +
Sbjct: 665 IATKNGLCIRFLESDVRQMGRTA-HGVKGISLEKEDLVVSMDVIYEEEAEILSMTELGFS 723

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
                SE     R GK  +      K    + L V    + + ++ E+  ++   +  I 
Sbjct: 724 KRTSLSEYRVQGRGGKGIIATKLNAKTGKLVGLKVMRPENDMMIITEDGIIIRQEVSGIS 783

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           +  R  +GV      +  +  +      E   
Sbjct: 784 KQGRSAQGVMAMRIGESKVVAIAVVDNKEDAE 815


>gi|33574094|emb|CAE38419.1| DNA gyrase subunit A [Bordetella parapertussis]
 gi|33576885|emb|CAE33965.1| DNA gyrase subunit A [Bordetella bronchiseptica RB50]
          Length = 877

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/784 (31%), Positives = 388/784 (49%), Gaps = 58/784 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ ++A  +L 
Sbjct: 61  YHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+ +  L 
Sbjct: 121 DIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEVVDGCLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV-GRG 264
            + NPE SI++L+E I  PDFPTGG ++     + E YR GRG   +RA+   E++    
Sbjct: 181 CLRNPECSIDELIELIPAPDFPTGG-VIYGITGVREGYRTGRGRVIMRAKTHFEDMEKGN 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    R   P++
Sbjct: 240 RQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +N+  L     P+++ L  +++ +L HRREV+ RR+ F+++   
Sbjct: 300 VLNNLYKNTQLQDTFGMNLVALVD-GQPRLLNLKQLIEYFLQHRREVVTRRTVFQLRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------------- 419
            R  +L+GL +A  NID+ IAII+    P                               
Sbjct: 359 ERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARVDGDAAGG 418

Query: 420 -------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+E Q   ILN+RL+ L  LE+ +I  E  +++A    
Sbjct: 419 VAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKDVMATIAD 478

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC---EVSRADKATLQQAMIEK 517
           +  +L   ++    I+ E++ +K  FS S    RR        E+   D  T    ++  
Sbjct: 479 LLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDMVVTL 538

Query: 518 EPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                + S         K       A   KE D +     A+T D +L  S  G+ Y L 
Sbjct: 539 SHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWLK 598

Query: 577 AGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI 631
              +        G+ I  +  L   + +        +     + + +S+G       S+ 
Sbjct: 599 VWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDHYVFMATSRGTVKKTPLSDF 658

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
               + G   + +   + +       G H V +  +  K + F  + +  M R  +GVR 
Sbjct: 659 SNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRG 718

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
              ++G     +     E  + + +    Y +           RG  G +  +   R+G+
Sbjct: 719 MMLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGR 778

Query: 750 FLSS 753
            + +
Sbjct: 779 VVGA 782



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 5/167 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   +GD L  A        ++L S  GKA      ++     +   ++ +
Sbjct: 660 NPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRGM 719

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKM 650
           +       I      D T  +L  +  G       +E   + R  K  + +   S   ++
Sbjct: 720 MLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGRV 779

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
              V V   D + ++     L+   + +I EM R  +GV L S  DG
Sbjct: 780 VGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDG 826


>gi|282600302|ref|ZP_05973771.2| DNA gyrase, A subunit [Providencia rustigianii DSM 4541]
 gi|282565780|gb|EFB71315.1| DNA gyrase, A subunit [Providencia rustigianii DSM 4541]
          Length = 874

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/803 (32%), Positives = 412/803 (51%), Gaps = 66/803 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +S ++ E    +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ 
Sbjct: 1   MRDSGSMSEIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNV 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+   +KKSARIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DG
Sbjct: 61  LGNDWNKPYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGI
Sbjct: 121 DSAAAMRYTEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+    LA I++ +ISIE L+E+I GPDFPT   I+  R  I+++Y
Sbjct: 181 AVGMATNIPPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAA-IINGRRGIIDAY 239

Query: 244 RLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           R GRG   +RAR  VE +   G   I+V+EIPYQV K+RLIEKIAEL+  KR+  +  +R
Sbjct: 240 RTGRGKVYIRARAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  I+ 
Sbjct: 300 DESDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKILNLKDIIA 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------- 415
            ++ HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P         
Sbjct: 359 AFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLIS 418

Query: 416 ------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                         V    + LTE Q  AIL+LRL+ L  LE  
Sbjct: 419 RSWALGTVAAMLERAGDDAARPEWLEPQYGVHNGEYFLTEQQAQAILDLRLQKLTGLEHE 478

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++  E  +LL + E++  +L S  +    I  E+  ++ +++ +     RRT   E +  
Sbjct: 479 KLLEEYRDLLKQIEELLFILRSPDRLMEVIREELEAIRNVYNDA-----RRTEITENTAD 533

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I +E + V +S++G+          + +      SA   KE D ++  L A
Sbjct: 534 ---INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVA 590

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
           +T D IL  S+ G+ Y +    L        G  I  L+ L  ++ I        Y+   
Sbjct: 591 NTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY 650

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            + + ++ G        +       G   + ++  +++  V    G + V +     K++
Sbjct: 651 YVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVV 710

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F+ D +  M R   GVR     D      +     EG   +      Y +   +     
Sbjct: 711 RFAEDAVRAMGRTATGVRGIKLMDDDKVVSLIIPRGEG-HILTVTENGYGKRTEEAEYPT 769

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+G  + +
Sbjct: 770 KSRATQGVISIKVSERNGHVVGA 792


>gi|151220217|ref|YP_001331040.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|150373017|dbj|BAF66277.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
          Length = 893

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 9   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 68

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 69  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 128

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 129 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 188

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 189 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 247

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 248 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 307

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 308 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 366

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 367 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 426

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 427 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 486

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 487 GD-----DRRTEI--QLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 539

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 540 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 599

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 600 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 659

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 660 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 719

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 720 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 761



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 699 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 758

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 759 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 818

Query: 707 EGLT 710
           +   
Sbjct: 819 DAED 822



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 714 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 773

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 774 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 819


>gi|253730405|ref|ZP_04864570.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725885|gb|EES94614.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 884

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLTW 711
           +    
Sbjct: 813 DADEV 817



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|153086|gb|AAA73952.1| DNA gyrase A subunit [Staphylococcus aureus]
          Length = 889

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHENSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V       ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHENSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLT 710
           +   
Sbjct: 813 DAED 816



 Score = 42.5 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 2/101 (1%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D +L+++ +G     P  +       G+ I+       N ++V          L++V++ 
Sbjct: 713 DEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNA 772

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 773 GVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|1346238|sp|P20831|GYRA_STAAU RecName: Full=DNA gyrase subunit A
          Length = 889

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLT 710
           +   
Sbjct: 813 DAED 816



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|21281735|ref|NP_644821.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2]
 gi|49484918|ref|YP_042139.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|88193829|ref|YP_498614.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|297209446|ref|ZP_06925844.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911470|ref|ZP_07128919.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|38604895|sp|Q8NKW8|GYRA_STAAW RecName: Full=DNA gyrase subunit A
 gi|59797749|sp|Q6GD84|GYRA_STAAS RecName: Full=DNA gyrase subunit A
 gi|114149316|sp|Q2G2Q0|GYRA_STAA8 RecName: Full=DNA gyrase subunit A
 gi|540542|dbj|BAA01370.1| DNA gyrase A [Staphylococcus aureus]
 gi|21203170|dbj|BAB93871.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2]
 gi|49243361|emb|CAG41778.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87201387|gb|ABD29197.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|296885907|gb|EFH24842.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300887649|gb|EFK82845.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|329731627|gb|EGG67987.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21189]
          Length = 887

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLT 710
           +   
Sbjct: 813 DAED 816



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|260913652|ref|ZP_05920128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis
           ATCC 43325]
 gi|260632191|gb|EEX50366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis
           ATCC 43325]
          Length = 901

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/821 (30%), Positives = 403/821 (49%), Gaps = 74/821 (9%)

Query: 5   NISNS-NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++       +++  +S+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E
Sbjct: 6   SMTDLVQDNTHQDISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHE 65

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G  +   ++KSARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 66  GGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSIDG 125

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGI
Sbjct: 126 DAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGI 185

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  LA I+N EI+I++L+ YI GPDFPT   ++  R+ I E+Y
Sbjct: 186 AVGMATNIPPHNLGEVLDGCLAYIENNEITIDELMTYIPGPDFPTAA-LINGRKGIEEAY 244

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG   VRA+  VE   +G   IVV EIPYQV K++LIEKIA+L+  K+I  +  I D
Sbjct: 245 KTGRGKIYVRAKAEVETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKIEGISAITD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            S +D   +     R    ++++ +++ L+ ++  F +N+  L     P+++ L  +++ 
Sbjct: 305 LSDKDGMRIEIKIKRDAVGEVVLNNLYALTQLQVTFGINIVALDK-GQPKLLNLKQLIEA 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------- 415
           ++ HRREV+ RR+ + ++    R  IL+GL IA  N+D II +IR    P+         
Sbjct: 364 FVLHRREVVTRRTVYELRKARERAHILEGLAIALANVDPIIELIRQAPNPETAKRELIAQ 423

Query: 416 -----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
                                        +    + LTE Q  AIL+LRL+ L  L   +
Sbjct: 424 PWKLGHVADMLAAAGVDAARPEELEEQYGIRDGMYYLTEVQAQAILDLRLQKLTNLGHDE 483

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I  E   LL    ++  +L S ++    I  E+ +++E F+         ++        
Sbjct: 484 ILDEYQKLLEVIGELLYILRSPERLMEVIREELEQIREQFNDPRRTEITASSGDINLEDL 543

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
            A     +       V         + +      SA   KE D ++  L A+T D IL  
Sbjct: 544 IAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILCF 603

Query: 567 STDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           S+ G+ Y L    L        G  I  ++ L+ N+ I        Y+    +++ ++ G
Sbjct: 604 SSRGRLYWLKVYQLPQASRGSRGRPIVNILPLDENERITAILPVTAYEEDKFVVMATAGG 663

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE 680
               +  +E       G   L +  E+++  V    G + + +     +++ FS   +  
Sbjct: 664 IVKKISLTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSAQGRVVRFSESAVRA 723

Query: 681 MSRGK-GVRLQSYK--------------------------DGGISDVICFKICEGL-TWI 712
           M R   GVR                               D  +  V+   I +     +
Sbjct: 724 MGRAATGVRGIKLALTNDLSDDESAVEIEDISDDNSDDILDLNVDKVVSLVIPKNQGAIL 783

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    Y +    +      R   G +  K   R+GK +++
Sbjct: 784 TATQNGYGKRTELVEYPTKSRNTKGVISIKVSERNGKVVAA 824


>gi|15925711|ref|NP_373244.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315]
 gi|258438585|ref|ZP_05689808.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299]
 gi|258443959|ref|ZP_05692297.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115]
 gi|269201696|ref|YP_003280965.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282894285|ref|ZP_06302515.1| DNA gyrase, A subunit [Staphylococcus aureus A8117]
 gi|296275681|ref|ZP_06858188.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MR1]
 gi|38605032|sp|Q99XG5|GYRA_STAAN RecName: Full=DNA gyrase subunit A
 gi|13699923|dbj|BAB41222.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315]
 gi|257848144|gb|EEV72136.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299]
 gi|257850843|gb|EEV74787.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115]
 gi|262073986|gb|ACY09959.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282763330|gb|EFC03460.1| DNA gyrase, A subunit [Staphylococcus aureus A8117]
          Length = 889

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLT 710
           +   
Sbjct: 813 DAED 816



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|258423232|ref|ZP_05686124.1| DNA gyrase subunit A [Staphylococcus aureus A9635]
 gi|257846561|gb|EEV70583.1| DNA gyrase subunit A [Staphylococcus aureus A9635]
          Length = 887

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL- 709
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G     +       + 
Sbjct: 654 VRLTSGQEDILIGTAHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSID 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSIDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLT 710
           +   
Sbjct: 813 DAED 816



 Score = 44.0 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSIDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|190891181|ref|YP_001977723.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CIAT 652]
 gi|190696460|gb|ACE90545.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CIAT 652]
          Length = 751

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/739 (64%), Positives = 618/739 (83%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+
Sbjct: 13  DDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE
Sbjct: 73  KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P  FPNLLANG+SGIAVGMATSIPS
Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIAVGMATSIPS 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVR
Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  E++GRG + IVVTEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+RIVL
Sbjct: 253 AKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRIVL 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK+R++DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL 
Sbjct: 313 VPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEWLDHRREVLQ 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS FR+ AID+R+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN
Sbjct: 373 RRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LRKLEE++I+ E D L  EK +I++LL S  +QW  +A EI EVK+ F+K+T++G
Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVG 492

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRT F +   AD+  +QQAMIEKEPITVVIS +GWIR+LK H  D + L FKEGD LK+
Sbjct: 493 RRRTQFADAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKV 552

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q ++TAFV+D   K
Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPARK 612

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L+VS+ GN F+V E+E+IANTRKGK  + V+  E+ +L+V V+GDHVAVVGENRKLL+F
Sbjct: 613 QLIVSTAGNGFVVAEAELIANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVF 672

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + Q+PEM+RGKGVRLQ YKDGGISDV CF + +GL W DSAGR++ +++++L  WLG R
Sbjct: 673 PLAQVPEMTRGKGVRLQRYKDGGISDVRCFAMSDGLVWEDSAGRTFTKNKDELAEWLGDR 732

Query: 734 GGVGSLVPKGFPRSGKFLS 752
              G  VPKGFPRSGKF  
Sbjct: 733 ASAGRTVPKGFPRSGKFAG 751


>gi|253733833|ref|ZP_04867998.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728136|gb|EES96865.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130]
 gi|329732398|gb|EGG68748.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21193]
          Length = 889

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLT 710
           +   
Sbjct: 813 DAED 816



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|257424202|ref|ZP_05600631.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257426879|ref|ZP_05603281.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429515|ref|ZP_05605902.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432162|ref|ZP_05608525.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435123|ref|ZP_05611174.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876]
 gi|282907053|ref|ZP_06314901.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910032|ref|ZP_06317840.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912280|ref|ZP_06320076.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282912920|ref|ZP_06320712.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282922548|ref|ZP_06330238.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101]
 gi|283959490|ref|ZP_06376931.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293497973|ref|ZP_06665827.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424]
 gi|293550172|ref|ZP_06672844.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|297589195|ref|ZP_06947836.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus MN8]
 gi|257273220|gb|EEV05322.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276510|gb|EEV07961.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279996|gb|EEV10583.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283041|gb|EEV13173.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285719|gb|EEV15835.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876]
 gi|282314769|gb|EFB45155.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101]
 gi|282323020|gb|EFB53339.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282323976|gb|EFB54292.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326098|gb|EFB56403.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329952|gb|EFB59473.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260]
 gi|283789082|gb|EFC27909.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919219|gb|EFD96295.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|291096904|gb|EFE27162.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424]
 gi|297577706|gb|EFH96419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312436853|gb|ADQ75924.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195232|gb|EFU25620.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus CGS00]
          Length = 886

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 7/116 (6%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             + +      + + +V     ++   +  I +  R  +GVRL    D      + 
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 808



 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKV 810


>gi|90412222|ref|ZP_01220228.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum 3TCK]
 gi|90326946|gb|EAS43331.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum 3TCK]
          Length = 892

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/799 (31%), Positives = 402/799 (50%), Gaps = 58/799 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLDKETVDYVPNYDGTEFIPAVMPTRVPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +I++E+L++YI GPDFPT   ++  R+ I+++Y  
Sbjct: 177 GMATNIPPHNLGEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAA-LINGRKGIIDAYHT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRAKASIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVVECKRDAVGEVILNNLYSQTQLQTTFGINMVALDH-GQPKLFSLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ + ++    R  +L+GL IA +NIDEII +I++   P+           
Sbjct: 355 NHRREVVTRRTIYELRKARERAHLLEGLAIALVNIDEIIELIKSAPTPQVAREELLARPW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 QLGDVAAMLERAGVDAARPEWLEPQFGIHGGQYFLTEPQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL   E++  +L S ++    I  E+  VKE F+          +          
Sbjct: 475 EEYKGLLDVIEELLLILGSPERLMEVIRDELYAVKEQFNDERRTEITAASHDIDLEDLIT 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +       A   K+ D ++  L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHEGYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L   S    G+ I  ++ L  ++ I        Y++   + + ++ G  
Sbjct: 595 RGRMYWLKVYQLPLASRTARGKPIVNILPLEEDERITAILPVREYEADKYVFMATADGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF--SIDQ--- 677
                ++       G   + +   + +  V      D + +  +  K++ F  S D+   
Sbjct: 655 KKTPLTDFSRPRSAGIIAVNLREGDSLIGVDITNSTDDIMLFSKFGKVVRFYESADENGK 714

Query: 678 --IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             +  M R   GVR     +G     +     EG   +      Y +           R 
Sbjct: 715 GGVRGMGRTAAGVRGMKLAEGDKVVSLIVPHNEGD-VLTVTENGYGKRTALTEYPAKSRA 773

Query: 735 GVGSLVPKGFPRSGKFLSS 753
             G +  K   R+G  + +
Sbjct: 774 TQGVVSIKVSDRNGSVVGA 792


>gi|302331778|gb|ADL21971.1| DNA topoisomerase (ATP-hydrolyzing) subunit A, GyrA [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 886

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLTW 711
           +    
Sbjct: 813 DADEV 817



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|320531050|ref|ZP_08032080.1| DNA gyrase, A subunit [Selenomonas artemidis F0399]
 gi|320136716|gb|EFW28668.1| DNA gyrase, A subunit [Selenomonas artemidis F0399]
          Length = 824

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/752 (33%), Positives = 391/752 (51%), Gaps = 13/752 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  V  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM   G+    
Sbjct: 13  NFGEGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTK 72

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGDSAAA R
Sbjct: 73  PYKKSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMR 132

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM++++EL+L+ +D++ VDF D Y+  + EP+V P+KFP LL NGT+GIAVGMAT+
Sbjct: 133 YTEVRMSKISELMLRDIDKETVDFTDNYDGSEKEPIVLPAKFPQLLVNGTAGIAVGMATN 192

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L LIDNP+ ++E+L+  I GPDFPT G ++   E I ++Y  GRG  
Sbjct: 193 IPPHNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAG-LILGTEEIRKAYTTGRGVI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RAR  +E +  G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES     
Sbjct: 252 KMRARAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGM 311

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++  ++  + ++  F + M  L     P +M L  +L  +++H+  
Sbjct: 312 RIVIELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVD-GQPVIMNLRSVLGHYISHQET 370

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ + +   + R  IL+GL IA  ++D +I  IR        +  ++  F LTE Q
Sbjct: 371 VITRRTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMEGFKLTEKQ 430

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+LRL+ L  LE  +I+ E   +LA  E+  S+L    +    I  E+ EV++ + 
Sbjct: 431 AQAILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILADRNKVLAIIKNELIEVRDKYG 490

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                           +   A     +       +        R  +   V +  +  KE
Sbjct: 491 DERRTEITFDASEMDIKDLIAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKGMGTKE 550

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D +   L   T   IL  +  G+A+ L A  +       +  AI  L+ +  ++ I   
Sbjct: 551 TDIVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADERITAV 610

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-V 661
                +     L + + KG       +E     + G   + +  ++++  V    G++ +
Sbjct: 611 IQVREFKPDRFLFLGTRKGVVKKTPLAEFANIRKSGLRAVNLDEDDELIGVKFTDGENRI 670

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +   + K + F  D +  M R  +GVR  +  DG     +   +  G   +      Y 
Sbjct: 671 MLGTRHGKAITFPEDGVRSMGRIARGVRGITLSDGDEVVAMDI-LKSGSEVLTVTEGGYG 729

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +           RGG G +  K   ++G  + 
Sbjct: 730 KRTAADEYRTQTRGGKGLINMKVTEKTGSVVG 761



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 6/169 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A++  E D L         +RI+L +  GKA T P  + +   G        I L+ 
Sbjct: 646 GLRAVNLDEDDELIGVKFTDGENRIMLGTRHGKAITFP-EDGVRSMGRIARGVRGITLSD 704

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVK 655
             ++V   +  S  ++L V+  G        E    TR GK  + +   EK   +  +  
Sbjct: 705 GDEVVAMDILKSGSEVLTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTEKTGSVVGIRV 764

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           V G   + ++     ++  ++D+I  +SR  +GV+L +  +      + 
Sbjct: 765 VRGSQELMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASMA 813


>gi|37514961|dbj|BAC98437.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/789 (30%), Positives = 383/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRLYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD++VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE ++++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACHHLLANPEATVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L  +LAHRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDTFGMNMVALVD-GQPKLLNLKEMLVCFLAHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE I II+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       +++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSADKYVFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G+H V +  ++ K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  + + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGVIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+G+ +++
Sbjct: 788 ERNGRVVAA 796



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVV 654
             Q I           +L  +  G       +E   + R  K  + + + E   ++    
Sbjct: 738 GQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGVIAIQTSERNGRVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|94323533|gb|ABF17878.1| DNA gyrase subunit A [Staphylococcus xylosus]
          Length = 903

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/762 (32%), Positives = 405/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ + E G+    
Sbjct: 3   ELPESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPLI GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLIDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMSKITLEMLRDINKDTIDFIDNYDGNEREPAVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+I++ +L+E + GPDFPT GII+  +  I  ++  GRG  
Sbjct: 183 IPPHNLTEVINGVLSLSYNPDITVAELMEDVQGPDFPTAGIIL-GKSGIRRAFETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTE+PYQV K+R+IEKIAEL   K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIEGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L+E+L H++
Sbjct: 302 VRVVIDIRKDANASVVLNNLYKQTPLQTSFGVNMIALV-NGRPKLISLKEALEEYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII +IR  +        +  +F L+E 
Sbjct: 361 VVVRRRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESETDKVAMASLQEQFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE   L+A  E++  +L   ++    +  E+ +++E +
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYIELIAYIEELKEILADEEKLLQIVRNELIDIRERY 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RR+              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRSEI--QLGGLDDIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQHRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++++ I T             L+  + KG       S      + GK  +   +++++  
Sbjct: 594 DNDESISTMIAVKDLESEDDYLVFATRKGRVKRSALSNFSHINKNGKIAISFKNDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V    G+   ++   +  L+ F+   +  + R   GV+  + ++      +     E   
Sbjct: 654 VRLTDGEQDILIGTSHASLIRFNETTLRPLGRTAAGVKGITLREDDKVIGLDVTNAESDE 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EILVVTENGYGKRTPVGDYRLSNRGGKGIKTATITERNGNIV 755



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 7/121 (5%)

Query: 589 AIQLLIDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L  +  ++       +S  ++LVV+  G        +   + R GK      +
Sbjct: 688 AGVKGITLREDDKVIGLDVTNAESDEEILVVTENGYGKRTPVGDYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
              +   + +      + + VV  +  ++   ++ I +  R  +GVRL    +      +
Sbjct: 748 TERNGNIVCITSVTGEEDLMVVTNSGVIIRIDVEDISQNGRAAQGVRLIKLGENQFVSTV 807

Query: 702 C 702
            
Sbjct: 808 A 808


>gi|91787677|ref|YP_548629.1| DNA gyrase subunit A [Polaromonas sp. JS666]
 gi|91696902|gb|ABE43731.1| DNA gyrase subunit A [Polaromonas sp. JS666]
          Length = 880

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/808 (31%), Positives = 401/808 (49%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGDQSVYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP+V P++ PNLL NG+ GIAVGMAT+
Sbjct: 122 YTEIRLSKIAHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L ++ NPE SI++L+E +  PDFPTGG I+     + + YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHMLKNPEASIDELMEIVPAPDFPTGG-IIYGINGVKDGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L     P++  L  +++ +L+HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALV-NGQPKLCNLKDLIQVFLSHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------- 414
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAIIRN   P                
Sbjct: 360 EVVTRRTVFTLRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMLRPWDSSL 419

Query: 415 ------------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                               + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRADGGVVNADDYRPDGLEKAFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E   ++AE + +  +L   ++    I  E+  +K  F + T LG RR+       
Sbjct: 480 DKIVAEYKEVMAEIDDLLDILAKPERVSIIIGEELSAIKLEFGQ-TKLGARRSQI---EH 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
           +      + +I    + V +S+ G+         R+ K       A   KE D +     
Sbjct: 536 SSFDLSTEDLITPTDMVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKITVVLPLTGEKRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADQYVFMATSMGTVKKTTLDEFSNPRKAGIIAVDLDDGDYLIGASLTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  M R  +GVR  + +DG     +     E  + + +    Y +  + 
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMTLEDGQGVIAMLVAEDEQQSVLTATQNGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RG  G +  +   R+GK +++
Sbjct: 776 TEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 78/262 (29%), Gaps = 14/262 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G + T 
Sbjct: 595 IANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMF---------PLQEGEKITV 645

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++   ++      +        +               + A+   +GD L  A    
Sbjct: 646 VLPLTGEKRSFPADQYVFMATSMGTVKKTTLDEFSNPRKAGIIAVDLDDGDYLIGASLTD 705

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               ++L S  GKA      ++     +   ++ +   +    I      D    +L  +
Sbjct: 706 GKHDVMLFSDGGKAVRFDENDVRPMGRNARGVRGMTLEDGQGVIAMLVAEDEQQSVLTAT 765

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFS 674
             G       +E   + R  K  + +   E+   VV  T     D + ++ +   L+   
Sbjct: 766 QNGYGKRTSITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHVDDEIMLITDKGVLVRTR 825

Query: 675 IDQIPEMSRG-KGVRLQSYKDG 695
           + +I EM R  +GV L    +G
Sbjct: 826 VSEIREMGRATQGVTLIGLDEG 847


>gi|88810645|ref|ZP_01125902.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231]
 gi|88792275|gb|EAR23385.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231]
          Length = 852

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/795 (32%), Positives = 409/795 (51%), Gaps = 66/795 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V + +  V+L   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +
Sbjct: 4   VAKEILPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELSNDWNRPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDAAVYDTIVRMAQVFAMRYPLIDGQGNFGSVDGDAAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +D++ VDF D Y+  + EP V P++ PN L NG SGIAVGMAT++P
Sbjct: 124 EIRMARIAHDLLADLDKETVDFVDNYDGSEQEPTVLPTRIPNFLVNGGSGIAVGMATNVP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A +ALID+  +++++L+ Y+ GPD PT   I+     I E+YR GRG   +
Sbjct: 184 PHNLGEVIDACMALIDDDSLTVDELMTYLPGPDLPTAA-IINGVAGIREAYRTGRGRMVI 242

Query: 253 RARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR   EE    G   ++VTE+PYQV K+RL+EKIA L+  KRI  + ++RDES +D   
Sbjct: 243 RARCEFEEEARSGKVSLIVTELPYQVNKARLLEKIAGLVKEKRIEGITELRDESDKDGIR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R   P++++ +++  + +E+   +NM  L+    P++  L  +L  +L HRREV
Sbjct: 303 VVIELRRGEVPEVVLNNLYQHTQLESVVGINMVALAK-GQPKLHSLRDVLDAFLRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------- 418
           + RR+ + ++    R  +L+GL +A  NIDE+IA+I+    P                  
Sbjct: 362 VTRRTVYELRKARERTHVLEGLAVALANIDEVIALIKASPGPAQAKAALLTRSWPPGSGI 421

Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    + + L+E Q  AIL+LRL+ L  LE+ +I  E  +
Sbjct: 422 TEMLQRAGAEVSKPEGLDASLGLVGAAYRLSETQAQAILDLRLQRLTGLEQNKIIEEYRD 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL    ++ ++L SG +    I  E+  +KE ++       RRT   E++        + 
Sbjct: 482 LLGSINELLAILGSGDRLMAVIREELLAIKEHYADP-----RRT---EITANRVDLTLED 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I+ E + V +S+ G+         ++        +A   K+ D +     A+T D +L 
Sbjct: 534 LIQPEDVVVTLSHGGYAKSQPLDSYQAQHRGGKGKAATKMKDEDFIDQLFLANTHDTLLC 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S+ GK Y L    L        G+ I  L+ L+  + I        +D    + + + K
Sbjct: 594 FSSHGKCYWLKVYELPHGSRGSRGKPIVNLLPLDPAERISAVVSIKEFDDQHFVFMATRK 653

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G       S+       G   + +  ++ +  V    G+  + ++ +  K + F  D + 
Sbjct: 654 GTVKKTPLSDFSRPRSSGIIAVNLQEDDWLVNVGITDGEREIMLLTDAGKAIRFPEDAVR 713

Query: 680 EMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R   GVR      G    VI   I      + +    Y +           RGG G 
Sbjct: 714 PMGRTAGGVRGIQLGTGQ--SVIQLLILGEGDILTATENGYGKRTPVAEYPRRSRGGRGV 771

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+G  + +
Sbjct: 772 ISIQTSERNGNVVGA 786



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/339 (10%), Positives = 100/339 (29%), Gaps = 23/339 (6%)

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
              ++ R+      +   + +++   +     +   +  + +       + T+ + +  +
Sbjct: 520 TEITANRVDLTLEDLIQPEDVVVTLSHGGYAKSQPLDSYQAQHRGGKGKAATKMKDEDFI 579

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +     L    +  +           +  +    S   +   I   +           + 
Sbjct: 580 DQLF--LANTHDTLLCFSSHGKCYWLKVYELPHGSRGSRGKPIVNLLPL------DPAER 631

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                +  E        +             +         +  S  + A++ +E D L 
Sbjct: 632 ISAVVSIKEFDDQHFVFMATRKG-------TVKKTPLSDFSRPRSSGIIAVNLQEDDWLV 684

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     I+LL+  GKA   P  + +   G        I L   Q ++   +     
Sbjct: 685 NVGITDGEREIMLLTDAGKAIRFP-EDAVRPMGRTAGGVRGIQLGTGQSVIQLLIL-GEG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENR 668
            +L  +  G       +E    +R G+  + +     +   +        D + ++    
Sbjct: 743 DILTATENGYGKRTPVAEYPRRSRGGRGVISIQTSERNGNVVGAAQVTEEDEIMLITNAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKI 705
            L+   + +I  +SR  +GV+L +   +  ++ V   + 
Sbjct: 803 TLVRIPVAEISIVSRNTQGVKLIALGGEERLAGVARIEP 841


>gi|315659990|ref|ZP_07912848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           lugdunensis M23590]
 gi|315494891|gb|EFU83228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           lugdunensis M23590]
          Length = 894

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/762 (33%), Positives = 405/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   DLPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+MT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L L  NP+I+I +L+E I GPDFPT GII+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++RAR  +EE G G   IVVTEIPYQV K+R+IEKIAEL+  K++  + D+RDE++    
Sbjct: 242 QMRARAEIEERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  + ++++ +++ L+ ++T F  NM  L     P+++ L   L ++L H++
Sbjct: 302 VRVVIDIRKDANANVILNNLYKLTPLQTSFGANMIALVD-GRPKLINLKEALVQYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +        +  RF LTE 
Sbjct: 361 VVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LLA  ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLAYIDELERILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGIDNIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T    +        L+  +  G       S      + GK  +    ++++  
Sbjct: 594 ANDESISTMIAVNDLESEGNYLIFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V    G    ++   +  L+ F+   +  + R   GV+  + ++G     +     E   
Sbjct: 654 VRLTDGQQDILIGTAHASLIRFAETSLRPLGRTAAGVKGITLREGDTVVGLDVAHSESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERNGNVV 755



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVV 664
           +S  ++LVV+  G        E   + R GK      +   +   + +      + + +V
Sbjct: 710 ESEDEVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIV 769

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT 710
                ++   +  I +  R  +GVRL    +      +     +   
Sbjct: 770 TNGGVIIRLDVQDISQNGRAAQGVRLMRLGNEQFVSTVAKVQNDSED 816


>gi|84393089|ref|ZP_00991854.1| DNA gyrase, subunit A [Vibrio splendidus 12B01]
 gi|84376246|gb|EAP93129.1| DNA gyrase, subunit A [Vibrio splendidus 12B01]
          Length = 895

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/800 (33%), Positives = 414/800 (51%), Gaps = 67/800 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY+S+VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D+D VDF   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N +I+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R+R  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSRANIEMEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  +  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYSQTQLQTTFGINMVALN-NGQPQLFNIKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDEII +I+N   P            
Sbjct: 355 DHRREVVTRRTIFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 DLGNVASMLERAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++I+        RRT   E++ A   
Sbjct: 475 DEYKALLEEIAELMHILASTERLMEVIREELEAVRDIYGDE-----RRT---EITAAVHD 526

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              + +I +E + V +SN G+          + +      SA   K+ D ++  L A+T 
Sbjct: 527 IDMEELIAQEDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTH 586

Query: 561 DRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
           D IL  ST GK Y L    L        G+ I  ++ L   + I        + +   + 
Sbjct: 587 DNILCFSTRGKTYRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIF 646

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + +  G        +       G   + +  ++ +  V    G+  + +  ++ K++ F+
Sbjct: 647 MATGDGTVKKTSLDQFANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFN 706

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            D++  M R   GVR     +      +     EG   +      Y +           R
Sbjct: 707 EDKVRPMGRTASGVRGMKLPEDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGR 765

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
              G +  K   R+G  + +
Sbjct: 766 ATQGVVSIKVSDRNGPVVGA 785


>gi|163868505|ref|YP_001609714.1| DNA topoisomerase IV subunit A [Bartonella tribocorum CIP 105476]
 gi|161018161|emb|CAK01719.1| topoisomerase IV subunit A [Bartonella tribocorum CIP 105476]
          Length = 749

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/747 (63%), Positives = 597/747 (79%), Gaps = 2/747 (0%)

Query: 6   ISNSNTLV--EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+   L   +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  
Sbjct: 1   MSDKMNLPFDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRL 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L+ G ++ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LKLNPGQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EPVV P  FPNLLANG+SGI
Sbjct: 121 DNAAAMRYTEARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP HNV E+C+AAL LI +P+   E L ++++GPDFPTGGI+VE +ESI ESY
Sbjct: 181 AVGMATSIPPHNVAELCDAALHLIAHPDTRDEDLNQFVLGPDFPTGGILVEPKESIEESY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R+GRG FR+R+RW  E   RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI+D
Sbjct: 241 RIGRGFFRLRSRWHQETGSRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIQD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAED+RIVL PKNRS+DP+LLMES+F L+D E RFPLN+NVLS+G++P V+ L   L++
Sbjct: 301 ESAEDIRIVLVPKNRSVDPELLMESLFKLTDFEVRFPLNLNVLSLGKIPNVLSLRESLQQ 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL HR+EVL RRS +R+  ID R+EIL G LIAYLN+DE+I IIR ED+PK  +++RF L
Sbjct: 361 WLVHRQEVLIRRSHYRLDQIDCRLEILHGYLIAYLNLDEVIQIIREEDEPKRKLINRFEL 420

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TENQ +AILN+RLRSLRKLEE++I+ E + L AEKEK+ +LL S  +QW  ++ EI++V+
Sbjct: 421 TENQAEAILNMRLRSLRKLEEFEIRKEFETLKAEKEKLQNLLASPIKQWKIVSEEIKKVR 480

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
             F   T LG+RRTTF E  R D   +QQAMIEKEP+TVVIS +GW+R+LK H  D  AL
Sbjct: 481 NTFGPETLLGKRRTTFEEAPRHDLDDIQQAMIEKEPVTVVISEKGWMRALKGHLNDYKAL 540

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FKEGDSLK+A  A TTD+I+L+ST GK + L A +L  GRGHGE I+LL+D++   D++
Sbjct: 541 SFKEGDSLKLAFPAFTTDKIVLISTGGKFFALGANSLPGGRGHGEPIRLLVDMDDEHDVL 600

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           TAFV+ +  KLL+VSS+GN FIV  +E+IANTRKGK  + V S +K+KL   V GDHVAV
Sbjct: 601 TAFVHHAEEKLLLVSSQGNGFIVPAAEVIANTRKGKQVMNVKSPDKVKLCAPVHGDHVAV 660

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           VGENRK+LIFSI+QIPEM+RGKGVRLQ YK+GGI D   F + EGL+W D+A R +NR  
Sbjct: 661 VGENRKMLIFSIEQIPEMNRGKGVRLQRYKEGGIVDAKTFNLSEGLSWQDTAERIFNRQA 720

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +DL+ W+G R GVG +VPKGFP+SGKF
Sbjct: 721 DDLIEWMGIRAGVGRMVPKGFPKSGKF 747


>gi|73661315|ref|YP_300096.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493830|dbj|BAE17151.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 897

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ + E G+    
Sbjct: 3   ELPESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMSKITLELLRDLNKDTIDFIDNYDGNEREPSVLPARFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+I+I +L+E I GPDFPT GII+  +  I  ++  GRG  
Sbjct: 183 IPPHNLTEVINGILSLSYNPDITIAELMEDIQGPDFPTAGIIL-GKSGIRRAFETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTE+PYQV K+R+IEKIAEL   K+I  + D+RDE++    
Sbjct: 242 QLRSRAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L E+L H++
Sbjct: 302 VRVVIDIRKDANASVVLNNLYKQTPLQTSFGVNMIALV-NGRPKLISLKDALVEYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII +IR  D        +  +F L+E 
Sbjct: 361 VVVRRRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESDNDKIAMASLQEQFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + L+A  E++ S+L   ++    +  E+ +V+E +
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELIAYIEELKSILADEEKLLQIVRDELIDVRERY 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   R+T              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RKTEI--QLGGLDDIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQHRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++++ I T             L+  + KG       S      + GK  +    ++++  
Sbjct: 594 DNDESISTMIAVKDLESEEDYLVFATQKGRVKRSALSNFSHINKNGKIAISFKQDDELIA 653

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V    G+  + +   +  L+ F    +  + R   GV+  + ++      +     E   
Sbjct: 654 VRLTDGETDILIGTSHASLIRFPETALRPLGRTAAGVKGITLREDDKVVGLDVTKAESDD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EILVVTENGYGKRTPVEDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 7/121 (5%)

Query: 589 AIQLLIDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L  +  +V       +S  ++LVV+  G        +   + R GK      +
Sbjct: 688 AGVKGITLREDDKVVGLDVTKAESDDEILVVTENGYGKRTPVEDYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
              +   + +      + + VV  +  ++   ++ I +  R  +GVRL    +      +
Sbjct: 748 TERNGNVVCITSVTGEEDLMVVTNSGVIIRIDVEDISQNGRAAQGVRLIKLGENQFVSTV 807

Query: 702 C 702
            
Sbjct: 808 A 808


>gi|323439693|gb|EGA97411.1| DNA gyrase subunit A [Staphylococcus aureus O11]
 gi|323443266|gb|EGB00883.1| DNA gyrase subunit A [Staphylococcus aureus O46]
          Length = 886

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLTW 711
           +    
Sbjct: 813 DADEV 817



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|149377385|ref|ZP_01895129.1| DNA gyrase, A subunit [Marinobacter algicola DG893]
 gi|149358309|gb|EDM46787.1| DNA gyrase, A subunit [Marinobacter algicola DG893]
          Length = 859

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/786 (32%), Positives = 394/786 (50%), Gaps = 48/786 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  A+
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMEKIAHSLLADLDKETVDFVANYDGTEQIPDVLPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI    LALIDNP+++I+ L+E+I GPDFPT G I+  R  IVE+YR GRG   +
Sbjct: 184 PHNLTEIVNGCLALIDNPDMTIDDLMEHIPGPDFPTQG-IINGRAGIVEAYRTGRGRIYI 242

Query: 253 RARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR  +  +       I++TE+PYQ+ K+RLIEKIAEL+  KR+  + ++RDES ++   
Sbjct: 243 RARHEIEHDKKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  +PD+++ ++F  + ++T F +NM  L     P+++ L  +L  ++ HRREV
Sbjct: 303 VVIELRRGENPDVVINNLFAHTQLQTVFGINMVALI-NGEPKILNLKEMLDAFVRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419
           + RR+ + ++    R  IL+GL +A  NIDEIIA+I+                       
Sbjct: 362 VTRRTIYELRKARERGHILEGLTVALANIDEIIALIKASPAAAEAKEKLMAQGWAPGDVL 421

Query: 420 -------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+  Q  AIL+LRL  L  LE  ++++E  ++
Sbjct: 422 AMLERAGEDACRPDDLPEIFGLRNGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKDI 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L +   +  +L    +    I  E+  V   F  +       +                +
Sbjct: 482 LEKIADLLEILGDPDRLMQVIREELEAVVSEFGDNRLTEITSSKRDLTIADLIDEEDLVV 541

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
                           ++ +      +A   K+ D ++  L A++ D IL  S  GK Y 
Sbjct: 542 TISHGGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYW 601

Query: 575 LPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEES 629
           L    +        G  +  ++ L   + I T      Y     +L+ +S G        
Sbjct: 602 LRVFEIPRASRASRGRPMVNILPLEEGERITTFLPVRDYPEDQYVLMATSAGVVKKTPLP 661

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
                   G   L +   + +       GD  V +     K + F+ + +  MSR  +GV
Sbjct: 662 NFSRPRSNGLIALSLDEGDTLIGTAITKGDAEVMLFSSAGKAVRFNEEAVRPMSRTARGV 721

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R     +G    V      E    + ++   Y +           RG  G +  +   R+
Sbjct: 722 RGIRMPEGHHV-VSLIIPQEDAVLLTASENGYGKRTTFDEFPTYSRGSQGVIAMQCSERN 780

Query: 748 GKFLSS 753
           G  +++
Sbjct: 781 GNLVTA 786



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 6/161 (3%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++L S+ GKA       +         ++  I +     +V+  +      LL  S  G 
Sbjct: 694 VMLFSSAGKAVRFNEEAVRPMSRTARGVRG-IRMPEGHHVVSLIIPQEDAVLLTASENGY 752

Query: 623 AFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                  E    +R   G   ++ S      +  +    GD + ++ +   L+    D++
Sbjct: 753 GKRTTFDEFPTYSRGSQGVIAMQCSERNGNLVTALQLFEGDEMMLISDKGTLVRTRTDEV 812

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
             +SR  +GVRL          V   +I E           
Sbjct: 813 SVLSRNTQGVRLIKLSQEDERLVGVERIAETDAEEVDGEEG 853


>gi|304379954|ref|ZP_07362683.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|304341534|gb|EFM07444.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
          Length = 886

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDASIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 7/116 (6%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             + +      + + +V     ++   +  I +  R  +GVRL    D      + 
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 808



 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKV 810


>gi|289551839|ref|YP_003472743.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01]
 gi|289181370|gb|ADC88615.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01]
          Length = 894

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/762 (33%), Positives = 405/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   DLPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+MT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L L  NP+I+I +L+E I GPDFPT GII+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++RAR  +EE G G   IVVTEIPYQV K+R+IEKIAEL+  K++  + D+RDE++    
Sbjct: 242 QMRARAEIEERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  + ++++ +++ L+ ++T F  NM  L     P+++ L   L ++L H++
Sbjct: 302 VRVVIDIRKDANANVILNNLYKLTPLQTSFGANMIALVD-GRPKLINLKEALVQYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +        +  RF LTE 
Sbjct: 361 VVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LLA  ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLAYIDELERILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGIDNIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T    +        L+  +  G       S      + GK  +    ++++  
Sbjct: 594 ANDESISTMIAVNDLESEGNYLIFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V    G    ++   +  L+ F+   +  + R   GV+  + ++G     +     E   
Sbjct: 654 VRLTDGQQDILIGTAHASLIRFAETSLRPLGRTAAGVKGITLREGDTVVGLDVAHSESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERNGNVV 755



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVV 664
           +S  ++LVV+  G        E   + R GK      +   +   + +      + + +V
Sbjct: 710 ESEDEVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIV 769

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT 710
                ++   +  I +  R  +GVRL    +      +     +   
Sbjct: 770 TNGGVIIRLDVQDISQNGRAAQGVRLMRLGNEQFVSTVAKVQNDSED 816


>gi|37514957|dbj|BAC98435.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/789 (30%), Positives = 381/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD++VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE ++++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACHHLLANPEATVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L  +LAHRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDTFGMNMVALVD-GQPKLLNLKEMLVCFLAHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE I II+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       +++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I              + + +S G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFLADKYVFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G+H V +  ++ K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  + + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+G+ +++
Sbjct: 788 ERNGRVVAA 796



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 738 GQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|109898785|ref|YP_662040.1| DNA gyrase, A subunit [Pseudoalteromonas atlantica T6c]
 gi|109701066|gb|ABG40986.1| DNA gyrase subunit A [Pseudoalteromonas atlantica T6c]
          Length = 897

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/803 (33%), Positives = 395/803 (49%), Gaps = 67/803 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KK
Sbjct: 6   QEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKISHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +ALID PE+SIE+L+EYI GPDFPT   I   R+ I E+YR GRG   +RA
Sbjct: 186 NLTEVVNGCIALIDKPELSIEELMEYIPGPDFPTAAFIS-GRKGIEEAYRTGRGKIYMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E    G   IVV EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++ 
Sbjct: 245 RAEIEREDNGKETIVVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R+   ++L+  ++  + M+T F +NM  L     P+V  L  IL+ ++ HRREV+ R
Sbjct: 305 EVKRNESGEVLLNHLYSQTQMQTVFGINMVALDKT-QPKVFNLLEILQAFVLHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R+ F ++    R  IL+GL IA  NID IIA+I+    P                     
Sbjct: 364 RTVFELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQGWALGDVSDML 423

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                             +    + LTE Q  AIL+LRL  L  LE  +I SE   LL  
Sbjct: 424 ERAGNDAARPDWLEPEFGIRDGLYYLTEQQAQAILDLRLNKLTGLEHEKILSEYKELLDL 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+ ++++ F           +            +  +   
Sbjct: 484 IAELLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDLIEREEVVVTLS 543

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               V         S +      SA   KE D ++  L A+T D IL  ST G+ Y L  
Sbjct: 544 REGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCFSTRGRLYWLKV 603

Query: 578 GNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
             L   S    G  I  ++ L  N+ I        ++    +L+ ++ G        +  
Sbjct: 604 YQLPLASRNARGRPIVNILPLEANERITAILPIQEFEEGKYVLMATANGTVKKTALVQYS 663

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID--------------- 676
                G   + ++  +++  V    G   + +  +  K++ F+                 
Sbjct: 664 RPRANGIIAVNLNDGDELIGVDITDGSSDIMLFSDAGKVVRFNEKARDSETGAVKIDPET 723

Query: 677 -----QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
                 +  M R   GVR    +DG     +     +G   + +    + +         
Sbjct: 724 GEEILALRPMGRTATGVRGIRLQDGQKVVSLIVPQGDGA-ILTATENGFGKRTPVEDYPA 782

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+GK + +
Sbjct: 783 KSRATQGVVSIKVSERNGKVVGA 805



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 5/111 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKM 650
           I L   Q +V+  V      +L  +  G        +  A +R   G   +KVS    K+
Sbjct: 743 IRLQDGQKVVSLIVPQGDGAILTATENGFGKRTPVEDYPAKSRATQGVVSIKVSERNGKV 802

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
              V+V   D + ++ +   L+   + ++  + R  +GVRL    +     
Sbjct: 803 VGAVQVNDSDEIMLISDQGTLVRTRVGEVSTVGRNTQGVRLIRTGEDEHVV 853


>gi|327192117|gb|EGE59094.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CNPAF512]
          Length = 751

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/739 (64%), Positives = 618/739 (83%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+
Sbjct: 13  DDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE
Sbjct: 73  KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P  FPNLLANG+SGIAVGMATSIPS
Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIAVGMATSIPS 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVR
Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  E++GRG + IVVTEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+RIVL
Sbjct: 253 AKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRIVL 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK+R++DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL 
Sbjct: 313 VPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEWLDHRREVLQ 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS FR+ AID+R+EIL GLL+AYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN
Sbjct: 373 RRSRFRLAAIDKRLEILGGLLVAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LRKLEE++I+ E D L  EK +I++LL S  +QW  +A EI EVK+ F+K+T++G
Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVG 492

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRT F +   AD+  +QQAMIEKEPITVVIS +GWIR+LK H  D + L FKEGD LK+
Sbjct: 493 RRRTQFADAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKV 552

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q ++TAFV+D   K
Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPARK 612

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L+VS+ GN F+V E+E+IANTRKGK  + V+  E+ +L+V V+GDHVAVVGENRKLL+F
Sbjct: 613 QLIVSTAGNGFVVAEAELIANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVF 672

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + Q+PEM+RGKGVRLQ YKDGGISDV CF + +GL W DSAGR++ +++++L  WLG R
Sbjct: 673 PLAQVPEMTRGKGVRLQRYKDGGISDVRCFAMSDGLVWEDSAGRTFTKNKDELAEWLGDR 732

Query: 734 GGVGSLVPKGFPRSGKFLS 752
              G  VPKGFPRSGKF  
Sbjct: 733 ASAGRTVPKGFPRSGKFAG 751


>gi|15893305|ref|NP_346654.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824]
 gi|18273029|sp|P94605|GYRA_CLOAB RecName: Full=DNA gyrase subunit A
 gi|15022824|gb|AAK77994.1|AE007513_7 DNA gyrase (topoisomerase II) A subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|325507414|gb|ADZ19050.1| DNA gyrase subunit A [Clostridium acetobutylicum EA 2018]
          Length = 830

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/751 (32%), Positives = 391/751 (52%), Gaps = 13/751 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     
Sbjct: 2   LNEGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD SVY +LVRLAQ F  RY ++ G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++A  +++ + ++ VDF   ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +    LIDNPE +I +L+  I GPDFPT G I+  +  I  +Y  GRG   
Sbjct: 182 PPHNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAG-IIMGKSGIRAAYETGRGKIT 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E    G   I++TEIPYQV K+RL+E IA+L+  KRI  + D+RDES  D   
Sbjct: 241 VRAKSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + ++++  ++  + ++  F +NM  L   R P+V+ L  IL+ ++  + +V
Sbjct: 301 IVIEIKKDANSNIILNQLYKHTRLQDTFGINMLALVDNR-PEVLNLKQILQHYIKFQEQV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL IA  +IDE+I++IR     +      + +F L+E Q 
Sbjct: 360 IRRRTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDKFGLSEKQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+L+L+ L  LE  +I+ E + L+    ++ S+L    +    I  E+ E+K  +  
Sbjct: 420 QAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSILADENKILAIIRDELNEIKAKYGD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                  R                 +       +   N     S K     + A+  KE 
Sbjct: 480 ERKTAIERAENDIDIEDLIQEENVVITLTHAGYIKRINADTYTSQKRGGRGIQAMTTKED 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAF 606
           D ++      T + IL  +  G+ Y L A  +       +      L+ L+ N+ I    
Sbjct: 540 DFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGRAAKGTNVVNLLQLDPNEKIQAVI 599

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVA 662
               +D    L++ + KG              + G   + ++ ++++  V    G D + 
Sbjct: 600 SIKEFDEESFLVMCTKKGIIKKTVVGMYKNIRKSGLIAINLNDDDELVSVRITKGDDDII 659

Query: 663 VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +V      + F+   +  + R   GV+  + K+     V      +    +  +   + +
Sbjct: 660 IVTNKGLAIRFNEVDVRPLGRNALGVKGITLKEDDFV-VGMEVPNQESDVLVVSENGFGK 718

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +        RGG G +  K   ++GK + 
Sbjct: 719 RTHVGEYKCQHRGGKGLITYKVSDKTGKLVG 749



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 6/222 (2%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +   + K   +++ +       +I               L A++  + D L        
Sbjct: 595 IQAVISIKEFDEESFLVMCTKKGIIKKTVVGMYKNIRKSGLIAINLNDDDELVSVRITKG 654

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
            D I++++  G A      ++     +   +   I L  +  +V   V +    +LVVS 
Sbjct: 655 DDDIIIVTNKGLAIRFNEVDVRPLGRNALGV-KGITLKEDDFVVGMEVPNQESDVLVVSE 713

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSI 675
            G        E     R GK  +     +K   +  V  V  GD + ++      +  ++
Sbjct: 714 NGFGKRTHVGEYKCQHRGGKGLITYKVSDKTGKLVGVRMVEDGDELMLINNLGIAIRINV 773

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             I   SR   GV L           +     +    ++ + 
Sbjct: 774 SDISTTSRNAMGVTLMRNNGDEKVLALAKINKDDSEQLEDSE 815


>gi|261253081|ref|ZP_05945654.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891]
 gi|260936472|gb|EEX92461.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891]
          Length = 874

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/792 (32%), Positives = 398/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAFIDNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDEII +IRN   P            
Sbjct: 355 DHRREVVTRRTIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLESAGTDAARPDWLEEQYGIRDGQYYLTETQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E +++  +L S ++    I  E+  V++ F           +         A
Sbjct: 475 DEYKALLDEIKELMHILASTERLMEVIREELETVRDAFGDVRRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVDEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +  ++ +  V    GD  + +  +  K++ F+ D++  M 
Sbjct: 655 KKTPLTQFANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFAEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     +      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLAEDDQVVSLIVPANEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSDRNGPVVGA 785


>gi|329900831|ref|ZP_08272599.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
 gi|327549359|gb|EGF33929.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
          Length = 884

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/807 (29%), Positives = 393/807 (48%), Gaps = 70/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               +    +SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM EM   +  
Sbjct: 2   DQFAKETIPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + K AR+VGEV+GK HPHGDQS+YD+LVR+AQ F  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  IL  +D+D VDF   Y+ ++ EP V P++ PNLL NG SGIAVGMAT+
Sbjct: 122 YTECRLDKIANEILADIDKDTVDFVPNYDGKEKEPTVLPTRIPNLLINGASGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ + AL ++ N + +I++L+E I  PDFPT G I+     + + YR GRG  
Sbjct: 182 IPPHNITEVIDGALHVLRNADCTIDELIEIIPAPDFPTAG-IIYGVSGVRDGYRTGRGRI 240

Query: 251 RVRARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   EE        I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +  
Sbjct: 241 VMRAKTHFEEYGKESRTAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R+  P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L+HRR
Sbjct: 301 MRVVIELKRAEVPEVVLNNLYKQTQLQDTFGMNMVALVD-GQPKLLNLKQMLQCFLSHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------- 412
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAII+                     
Sbjct: 360 EVVTRRTIFELRRARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKVELMARAWDSSV 419

Query: 413 ---------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L+++Q   IL +RL+ L  LE+ 
Sbjct: 420 VREMLVRTGEEALGGINAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E   ++A+   +  +L+  ++    I  E+   K  +       RR      +   
Sbjct: 480 KIVNEYKEVMAQIADLLDILSKPERVTIIIVDELTAAKMEYGIGNKDERRS----YIEHN 535

Query: 506 DKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I  + + V +S+ G++        RS K       A+  K+ D +     A
Sbjct: 536 ATDLGTEDLITPQDMVVTLSHTGYMKSQPISEYRSQKRGGRGKQAMATKDDDWIDQLFIA 595

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------Y 608
           +T D IL  S  G+ Y L    +        G+ I  +  L   + +            +
Sbjct: 596 NTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLLDGEKVTVILPVSGDNRSF 655

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
                + + +S G       S+     + G   + +   + +       G H V +  ++
Sbjct: 656 PEDRYIFMSTSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDS 715

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            K + F  + +  M R  +GVR  + ++G     +     E  + + +    Y +     
Sbjct: 716 GKAVRFDENDVRPMGRTARGVRGMNLEEGQQVIALLVAENEQQSVLTATENGYGKRTPIT 775

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  +   R+G+ +++
Sbjct: 776 EYTRHGRGTKGMIAIQTSERNGRVVAA 802



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 96/287 (33%), Gaps = 20/287 (6%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G + T 
Sbjct: 594 IANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMF---------PLLDGEKVTV 644

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              VS  +++  +   I        +               + A+   EGD L  A    
Sbjct: 645 ILPVSGDNRSFPEDRYIFMSTSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTD 704

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVV 617
               ++L S  GKA      ++         ++ + +L   Q ++   V ++  + +L  
Sbjct: 705 GQHDVMLFSDSGKAVRFDENDVRPMGRTARGVRGM-NLEEGQQVIALLVAENEQQSVLTA 763

Query: 618 SSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVT-GDHVAVVGENRKLLIF 673
           +  G       +E   + R  KG   ++ S    ++     V   D + ++     L+  
Sbjct: 764 TENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAATLVEPSDEIMLITTGGVLIRT 823

Query: 674 SIDQIPEMSRG-KGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            + +I EM R  +GV L + +DG    G+  ++   + EG   +D+ 
Sbjct: 824 RVAEIREMGRATQGVTLIAVEDGTKLSGLQRIVEPDVEEGDDAVDAT 870


>gi|1790876|gb|AAB41131.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824]
          Length = 829

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/751 (32%), Positives = 391/751 (52%), Gaps = 13/751 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     
Sbjct: 2   LNEGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD SVY +LVRLAQ F  RY ++ G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++A  +++ + ++ VDF   ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +    LIDNPE +I +L+  I GPDFPT G I+  +  I  +Y  GRG   
Sbjct: 182 PPHNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAG-IIMGKSGIRAAYETGRGKIT 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E    G   I++TEIPYQV K+RL+E IA+L+  KRI  + D+RDES  D   
Sbjct: 241 VRAKSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + ++++  ++  + ++  F +NM  L   R P+V+ L  IL+ ++  + +V
Sbjct: 301 IVIEIKKDANSNIILNQLYKHTRLQDTFGINMLALVDNR-PEVLNLKQILQHYIKFQEQV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL IA  +IDE+I++IR     +      + +F L+E Q 
Sbjct: 360 IRRRTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDKFGLSEKQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+L+L+ L  LE  +I+ E + L+    ++ S+L    +    I  E+ E+K  +  
Sbjct: 420 QAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSILADENKILAIIRDELNEIKAKYGD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                  R                 +       +   N     S K     + A+  KE 
Sbjct: 480 ERKTAIERAENDIDIEDLIQEENVVITLTHAGYIKRINADTYTSQKRGGRGIQAMTTKED 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAF 606
           D ++      T + IL  +  G+ Y L A  +       +      L+ L+ N+ I    
Sbjct: 540 DFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGRAAKGTNVVNLLQLDPNEKIQAVI 599

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVA 662
               +D    L++ + KG              + G   + ++ ++++  V    G D + 
Sbjct: 600 SIKEFDEESFLVMCTKKGIIKKTVVGMYKNIRKSGLIAINLNDDDELVSVRITKGDDDII 659

Query: 663 VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +V      + F+   +  + R   GV+  + K+     V      +    +  +   + +
Sbjct: 660 IVTNKGLAIRFNEVDVRPLGRNALGVKGITLKEDDFV-VGMEVPNQESDVLVVSENGFGK 718

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +        RGG G +  K   ++GK + 
Sbjct: 719 RTHVGEYKCQHRGGKGLITYKVSDKTGKLVG 749



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 7/222 (3%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +   + K   +++ +       +I               L A++  + D L        
Sbjct: 595 IQAVISIKEFDEESFLVMCTKKGIIKKTVVGMYKNIRKSGLIAINLNDDDELVSVRITKG 654

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
            D I++++  G A      ++     +   +   I L  +  +V   V +    +LVVS 
Sbjct: 655 DDDIIIVTNKGLAIRFNEVDVRPLGRNALGV-KGITLKEDDFVVGMEVPNQESDVLVVSE 713

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSI 675
            G        E     R GK  +     +K   +  V  V  GD + ++  N   +  ++
Sbjct: 714 NGFGKRTHVGEYKCQHRGGKGLITYKVSDKTGKLVGVRMVEDGDELMLI-NNLHSIRINV 772

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             I   SR   GV L           +     +    ++ + 
Sbjct: 773 SDISTTSRNAMGVTLMRNNGDEKVLALAKINKDDSEQLEDSE 814


>gi|307243420|ref|ZP_07525577.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678]
 gi|306493230|gb|EFM65226.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678]
          Length = 812

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/755 (31%), Positives = 408/755 (54%), Gaps = 17/755 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +  +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G+     +
Sbjct: 3   NKSKIIPIEISQEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIEQGITPDKPY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+V+GK HPHGD SVY ++V++AQ F  R  L+ GQGNFGN+DGDS AA RYT
Sbjct: 63  RKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFATRGLLVDGQGNFGNVDGDSPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ +D++ VDF   ++E   EP+V P+K+PNLL NG++GIAVGMATSIP
Sbjct: 123 EARMSRLATELLRDIDKETVDFGPNFDESLQEPLVLPAKYPNLLVNGSNGIAVGMATSIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A +  IDN + + E L+E+I GPDFPTG +I+   E I E+YR GRG  RV
Sbjct: 183 PHNLGEVIDATVHYIDNRDCTTEDLMEHISGPDFPTGAMII-GTEGIKEAYRTGRGKVRV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR  +EE+ +G   IV+TEIP+QV KSRL+E+IA+L+  K++  + D+RDE+      V
Sbjct: 242 RARAEIEELPKGKQQIVITEIPFQVNKSRLVERIADLVRDKKVEGISDLRDETNRHGIRV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R ++ ++++ +++  S +E  F +    +   + P+V+ L   L+ ++ H+++V+
Sbjct: 302 VIELKRDVNANIILNNLYKHSQLEETFSIINLAIVD-KTPKVLNLKQYLECYVDHQKDVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
            RR+ F ++    R  IL+GL IA  NID +I+IIR  +  +     ++  F+L++ Q  
Sbjct: 361 TRRTQFELKKAQARAHILEGLKIALDNIDRVISIIRGSENGQIAKEKLIEEFALSDIQAQ 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I +E   L+     ++S+L    + +  I  E+  +K+ ++  
Sbjct: 421 AILDMRLQRLTGLERDKIDNEYKELMERITYLESILADENKLFGVIKDEMLAIKDKYADP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                +        +      + A+       +        +S K     +SAL  +E D
Sbjct: 481 RRTEIKPAEGEIALKDLYEEEEIAITLTHLGYIKRLPADTYKSQKRGGRGISALTTREED 540

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV 607
            +   +   T   +L  +  G+ Y L A  +  G+   +  AI  L+ LN  + I     
Sbjct: 541 FVTDLISTTTHSLMLFFTNRGRVYKLNAYEVPEGKRTSKGTAIVNLLQLNPGEKIARTIS 600

Query: 608 YDST-------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
           +++          LL  +  G       S+     + G   + +   +++  V +  G +
Sbjct: 601 FNTDSKENEDLKYLLFATKSGIVKKTPISDFKNINKSGLIAINLKDGDELIGVNRTNGEE 660

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V EN   + F+ + +  M R   GV+  +   G     +   I  G   +  + + 
Sbjct: 661 DIILVTENGMSIRFNENDVRSMGRTATGVKGITLSKGDHVVSMDL-ISNGTDLLVVSEKG 719

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + +           R G G        ++GK + +
Sbjct: 720 FGKRTETEEYRPQIRAGKGIKTYNINSKTGKLVGA 754



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 8/182 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
             +   L A++ K+GD L      +  + I+L++ +G +      ++ S       +   
Sbjct: 633 NINKSGLIAINLKDGDELIGVNRTNGEEDIILVTENGMSIRFNENDVRSMGRTATGV-KG 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L+    +V+  +  +   LLVVS KG     E  E     R GK      +   +  K
Sbjct: 692 ITLSKGDHVVSMDLISNGTDLLVVSEKGFGKRTETEEYRPQIRAGKGIKTYNINSKTG-K 750

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +     V   D + ++  N  L+   +++I    R   GV+L    +      I     E
Sbjct: 751 LVGATLVDEDDEMMMINSNGVLIRIRVNEISIFGRVTSGVKLMKTDEEVEVVSIAKLKGE 810

Query: 708 GL 709
             
Sbjct: 811 EE 812



 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 57/152 (37%), Gaps = 2/152 (1%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +  ++  E    +  N   +RS+   +  +  +   +GD +           +L++S  G
Sbjct: 660 EDIILVTENGMSIRFNENDVRSMGRTATGVKGITLSKGDHVVSMDLISNGTDLLVVSEKG 719

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                           G+ I+     +    +V A + D   ++++++S G    +  +E
Sbjct: 720 FGKRTETEEYRPQIRAGKGIKTYNINSKTGKLVGATLVDEDDEMMMINSNGVLIRIRVNE 779

Query: 631 IIANTR--KGKTFLKVSSEEKMKLVVKVTGDH 660
           I    R   G   +K   E ++  + K+ G+ 
Sbjct: 780 ISIFGRVTSGVKLMKTDEEVEVVSIAKLKGEE 811


>gi|78221233|ref|YP_382980.1| DNA gyrase subunit A [Geobacter metallireducens GS-15]
 gi|78192488|gb|ABB30255.1| DNA gyrase subunit A [Geobacter metallireducens GS-15]
          Length = 857

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/770 (33%), Positives = 384/770 (49%), Gaps = 40/770 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM +MG D+   +KKSAR+V
Sbjct: 11  VNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD + YD++VR+AQ F  RYPL+ GQGNFG++DGDS AA RYTE RM Q+
Sbjct: 71  GDVIGKYHPHGDTAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRMEQL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VD    Y+   +EP+V PSKFPNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLNDLEKETVDLGFNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHNLSEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  +A I NP IS E+LL  + GPDFPTGG  +  RE I++ YR GRG  ++RAR  +E
Sbjct: 191 IDGIIATIGNPHISFEELLALVPGPDFPTGG-FIYGREGILQGYRTGRGIVQMRARASIE 249

Query: 260 EVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
              +     IVVTEIPYQV K+ LI KIAEL+  K++  + DIRDES  D   ++    R
Sbjct: 250 THKKTERQSIVVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVIDLKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +P +++  ++  + M+T F +NM  +     P+V+ L   +  ++ HRRE++ RR+ F
Sbjct: 310 DENPQVILNHLYKQTQMQTSFGINMLAIV-AGRPKVLTLQDAIGHFIDHRREIVTRRTIF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------------- 415
            ++  + R  IL+G  IA   +D +I +IR    P                         
Sbjct: 369 DLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAREGLMSGLFSDEEWLQKMGLPL 428

Query: 416 -----VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                       LTE Q   ILNLRL  L  LE  +I  E +++L    ++  +L S  +
Sbjct: 429 PAIHSQYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYEDILKYIARLKEILASEAE 488

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E+RE+KE F           +               +       +  +     
Sbjct: 489 ILKIIVGELRELKEKFGDERRTEIVDRSAEISLEDTIVEEDVVVTVSHTGYIKRTAVSQY 548

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGE 588
           RS +      + +  KE D ++    A + D +L  +  GK Y +    +        G+
Sbjct: 549 RSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVYEIPEGGRATRGK 608

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           AI  L++L  N+ I        +D    +L+ +  G        E       G   + + 
Sbjct: 609 AIVNLLNLQENEQITAILSVKGFDDERNILMATRLGVVKKSPLREYANIRSGGIIAVNLD 668

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            E+K+  V    G   V +   N K + F  +    M R  +GVR  + +D  +   +  
Sbjct: 669 EEDKLIAVALTDGRQDVLLASRNGKSIRFHEEDARPMGRVSRGVRGMTLEDDDVVIGMEV 728

Query: 704 KICE--GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 G T        + +        +  RGG G +  K   R+G  +
Sbjct: 729 INPSATGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERNGCVV 778



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 62/172 (36%), Gaps = 9/172 (5%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            + A++  E D L           +LL S +GK+      +          ++ +  L  
Sbjct: 661 GIIAVNLDEEDKLIAVALTDGRQDVLLASRNGKSIRFHEEDARPMGRVSRGVRGM-TLED 719

Query: 599 NQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MK 651
           +  ++   V +       +  V+  G     E  E    +R GK  + + + E+    + 
Sbjct: 720 DDVVIGMEVINPSATGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERNGCVVD 779

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++     + + ++ +  K+L   +     + R  +GVRL + +       + 
Sbjct: 780 IMQVTDENDLMLITDQGKILRIPVAPFSVIGRNTQGVRLMTAEQNERIVAVA 831


>gi|304408849|ref|ZP_07390470.1| DNA gyrase, A subunit [Shewanella baltica OS183]
 gi|307302852|ref|ZP_07582607.1| DNA gyrase, A subunit [Shewanella baltica BA175]
 gi|304352670|gb|EFM17067.1| DNA gyrase, A subunit [Shewanella baltica OS183]
 gi|306913212|gb|EFN43634.1| DNA gyrase, A subunit [Shewanella baltica BA175]
          Length = 916

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/815 (31%), Positives = 403/815 (49%), Gaps = 83/815 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI+ P +SIE+L+EYI GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D  
Sbjct: 241 IMRALADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +   ++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ ++ + +  +     RRT              + 
Sbjct: 480 LLEFIAGLLFILRSPERLMEVIKEELVQILDEYGDA-----RRTVINANEVDMSL---ED 531

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+         ++ +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L+  + I              +++ +S 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYAADKYIIMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID--- 676
           G       +        G   + +   +++  V    GD  + +     K++ F      
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRD 711

Query: 677 -----------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
                             +  M R   GVR    ++G     +     +G   +      
Sbjct: 712 SETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVPKGDGA-ILTVTENG 770

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +           R   G +  K   R+G  + +
Sbjct: 771 YGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGA 805


>gi|260584262|ref|ZP_05852009.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633]
 gi|260157780|gb|EEW92849.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633]
          Length = 850

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/767 (30%), Positives = 409/767 (53%), Gaps = 31/767 (4%)

Query: 6   ISNSNTL--VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S    L   EE  +   L   + + +L Y++S I  RA+PD+RDG KPVHRRI++ M E
Sbjct: 1   MSEEKDLEFFEEKFEPTDLAKTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+      KKSARIVG+V+GK HPHGD ++YD++VR+AQ F  RYPLI G GNFG++DG
Sbjct: 61  LGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DS AA RYTEARM+++A  +L+ +++D +++RD Y+  + EP V PS+ PNLL NG +GI
Sbjct: 121 DSPAAMRYTEARMSKIALEMLRDINKDTINYRDNYDSTEREPEVLPSRIPNLLVNGATGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP H++ E+  A   L+ NP+++  +L+E + GPDFPTGGI++  +  I  +Y
Sbjct: 181 AVGMATNIPPHHLGEVISALHLLMKNPDVTTAELMEVLPGPDFPTGGIVL-GKSGIRRAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   VR R  +EE+  G   I++TE+PY V K+RL+E+I++L   K+I  +  + D
Sbjct: 240 ETGRGSITVRGRVQIEELKNGKERIIITELPYMVNKARLVERISQLHHEKKIEGITYLND 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      V+    R +   +++ +++ L+ +++ F  NM  +  G+ P+++ L  IL+ 
Sbjct: 300 ESDRKGMRVVIEVRRDVSASVVLNNLYKLTPLQSNFGFNMLAIV-GQEPKILSLKEILRH 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSR 420
           +L H+ EV+ RRS F  +  + R  IL+GL +A  +ID I+AI+R+           ++ 
Sbjct: 359 YLNHQEEVIRRRSIFEKKKAEDRAHILEGLQVALDHIDAIVAILRSSASGDIAKERFMNE 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + L++ Q  AIL++R+  L  LE  +I +E  +L A  ++++ +L S ++++  I  E+ 
Sbjct: 419 YGLSDKQAQAILDMRMVRLTGLEREKIDAEYADLQALIKELNEILASEERRYEIIEQELL 478

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
           E+++ F        RRT          +   + +IE+E + + ++  G+I+         
Sbjct: 479 EIQQKFDNP-----RRTELL--VGEALSLEDEDLIEQEDVVITLTKNGYIKRLANSEFKT 531

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AI 590
            +     +  +   + D ++  +   T D +L  +  GK Y      +       +   +
Sbjct: 532 QRRGGRGVQGMSVHDDDFVENMISCSTHDSLLFFTNTGKVYQAKGYEIPEYSRTAKGLPV 591

Query: 591 QLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
             L++++  + I               L   + +G    V+ S+       G   +++  
Sbjct: 592 INLLNIDSTEKIQAIISVPESDETERFLFFTTLRGTVKRVKLSDFKNIRTNGLRAIQLRE 651

Query: 647 EEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           ++++  VV  +G   + +   +   + F  +++  M R   GVR  S +D      +   
Sbjct: 652 DDQLIRVVVTSGQDGIILGTYHGNAVTFHEEKVRAMGRTAAGVRGVSLRDDDYVIGMDIL 711

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             E    +  + + Y +        L  RGG G    +   ++G  +
Sbjct: 712 TPERE-VLVVSEKGYGKRTAASEYALKGRGGKGVKTLRITEKNGPLV 757



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 9/148 (6%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEK 649
           + L  +  ++   +     ++LVVS KG       SE     R GK    +     +   
Sbjct: 697 VSLRDDDYVIGMDILTPEREVLVVSEKGYGKRTAASEYALKGRGGKGVKTLRITEKNGPL 756

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI--C 706
           + L      + + ++     ++ F    + +  RG  GVR+       I   +       
Sbjct: 757 VCLRTVTGEEDLMIMTNKGVIIRFHASDVSQTGRGALGVRMMRLDQDAIVSSLAIVDREE 816

Query: 707 EGLTWIDSAGRSYN--RSENDLLGWLGK 732
           E    + S+  +    +   +L  +  +
Sbjct: 817 EAEETVTSSEETVVSEKVTENLQNFAQE 844


>gi|51891145|ref|YP_073836.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863]
 gi|51854834|dbj|BAD38992.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863]
          Length = 813

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/758 (32%), Positives = 385/758 (50%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +    ++  +E  YL Y++S I  RA+PD+RDG KPV RRI++AM E G      F+K
Sbjct: 7   QRILTKEIKHEMETSYLTYSMSVIVGRALPDVRDGLKPVQRRILYAMYESGNTADKPFRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+V+ K HPHGD +VYD++VR+AQ FV RYPL+ GQGNFG+IDGD  AA RYTEA
Sbjct: 67  SAKTVGDVLSKYHPHGDAAVYDTMVRMAQDFVLRYPLVEGQGNFGSIDGDPPAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  ++++ VDF D Y+  + EP V PS+FPNLL NG++GIAVGMAT+IP H
Sbjct: 127 RLSRLAHEMLADIEKNTVDFEDNYDNSEKEPTVLPSRFPNLLVNGSTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + LID P+ISIE+L   I GPDFPTG  ++   E I  +Y+ G+G   +RA
Sbjct: 187 NLGEVIDGIIRLIDQPDISIEELNRIIKGPDFPTGA-LILGHEGIRRAYQTGKGSITLRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   IVVTE+PY V K++LIE+IAEL   ++I  + D+RDES      +  
Sbjct: 246 RTQIETLQNGRNRIVVTELPYGVNKAKLIERIAELHRDRKIDGITDLRDESDRSGLRIAI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  +P +++  +F  + ++  F + M  L     P+++ L  +L  +L H+ EV+ R
Sbjct: 306 ELRRDANPHVILNQLFKYTALQQNFGIIMLALV-ENRPRLLNLKQMLHYYLQHQLEVIVR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAI 431
           R+ F +Q    R  IL+GLL A   IDE+I  IR+          ++S F  TE Q   I
Sbjct: 365 RTQFDLQKALDRAHILEGLLKALDIIDEVINTIRSSPTTDEARSRLMSNFGFTEVQAQHI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++LR L  LE  +++ E D L        ++L S K Q++ I  E+ E+K+ +     
Sbjct: 425 LDMQLRRLTALEREKLQEEYDELQDRIAYYRAVLASEKMQYDIIKQELGEIKKKYGDP-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT     +  D     + +I  E + V IS+ G+I+          +     +   
Sbjct: 483 ---RRTRI---TPDDGDIDIEDLIADEDVVVTISHSGYIKRVPLSTYRQQRRGGRGVQGA 536

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQD 601
             KE D ++      T   ++  +  G+ Y +    +     +  G AI  LI L   + 
Sbjct: 537 GTKEEDFIEHIFTTTTHHDMMFFTDQGRVYRIRCHEIPEASRQARGTAIVNLIPLLPGEK 596

Query: 602 IVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           + T             +   +  G       +E       G   +K+   + +       
Sbjct: 597 VNTVIPVKEGDQEEGYIFFATRSGWVKKTAVTEFQNVRSTGIIAIKLEEGDTLVGARLTR 656

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G D + +V      L F  D +  M R  +GV+  +        V    +  G   +  +
Sbjct: 657 GNDEIILVSSAGYALRFHEDDVRPMGRDTRGVKGITLGPDEYV-VGMDGVVPGADLLVVS 715

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
                +          KRG  G +  +  P R G+ + 
Sbjct: 716 ETGVGKRTPLTEYPTYKRGARGVITIQLLPERHGRLVG 753



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 7/194 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  + A+  +EGD+L  A      D I+L+S+ G A      ++  
Sbjct: 621 WVKKTAVTEFQNVRSTGIIAIKLEEGDTLVGARLTRGNDEIILVSSAGYALRFHEDDVRP 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKT 640
                  +   I L  ++ +V          LLVVS  G       +E     R  +G  
Sbjct: 681 MGRDTRGV-KGITLGPDEYVVGMDGVVPGADLLVVSETGVGKRTPLTEYPTYKRGARGVI 739

Query: 641 FLKVSSE--EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
            +++  E   ++  V  VT G+ + +V E   L+   ++++    R  +GV+L +     
Sbjct: 740 TIQLLPERHGRLVGVKAVTEGNDLMLVSEQGVLIRIPVEEVRRSGRNTQGVQLMNLDAND 799

Query: 697 ISDVICFKICEGLT 710
               +   +     
Sbjct: 800 RVSAVAQVVTRDEE 813


>gi|251794044|ref|YP_003008775.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2]
 gi|247541670|gb|ACS98688.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2]
          Length = 835

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/762 (33%), Positives = 413/762 (54%), Gaps = 30/762 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +       +K   +   + + ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+  
Sbjct: 2   AEEQQHSQIKDRDIGTEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVGEVIGK HPHGD SVY+++VR+AQ F  RY L+ G GNFG+IDGD AAA
Sbjct: 62  DKPYKKSARIVGEVIGKYHPHGDSSVYEAMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR++++A  +L+ ++++ VDF   Y+ E+ EP V PS+FPNLL NG +GIAVGMA
Sbjct: 122 MRYTEARLSKIAMEMLRDLNKETVDFVPNYDGEEKEPAVLPSRFPNLLVNGVTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +   ALI NPEI+  +L++Y+ GPDFPT G IV     I ++Y  GRG
Sbjct: 182 TNIPPHNLTEVIDGIQALIRNPEITPVELIDYVKGPDFPTAG-IVMGLSGIRQAYLTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RAR  +EE G  +  I+V E+PYQV K+RL+EKIAEL+  K+I  + D+RDES  +
Sbjct: 241 TVTMRARATIEENGNKA-RIIVYELPYQVNKARLVEKIAELVREKKIEGITDLRDESDRN 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R + P +++ +++  + M++ F +NM  L     P+ + +  +L  +L H+
Sbjct: 300 GMRVVIELRRDVTPSVVLNNLYKQTQMQSNFGINMLALV-NGEPKTLNIREMLYYYLQHQ 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            EV+ RR+ + ++  + R  IL+GL IA  ++DE+IA+IR        +  ++ RF+L+ 
Sbjct: 359 IEVIRRRTEYDLKKAEARAHILEGLRIALDHLDEVIALIRASQTADIAREGLIERFALSY 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I++E   L+ +  +  ++L   +   N I+ E+ E+KE 
Sbjct: 419 EQAQAILDMRLQRLTGLERDKIEAEYAELMKKIAEYKAILADEQLVLNIISDELNEIKER 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F        RRT   E++ +D+  L + +I +E + + I++ G+I+          K   
Sbjct: 479 FGDE-----RRT---EITVSDEEILDEDLIPREDVIISITHTGYIKRLPVTTYRSQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
             +  +  KE D ++    ++T   +L  +  GK Y L A  +        G  I  LI 
Sbjct: 531 KGVVGMDTKEHDFVEHLFVSNTHHYLLFFTNKGKVYRLKAYEIPDLSRTARGTPIINLIQ 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +   + I        +DS   L   + +G        + +   + G   + +  ++++  
Sbjct: 591 IEQGETINAVIPVESFDSESYLFFATRQGIVKKTPLDDYMNIRKVGLIAISIREDDELIG 650

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V    G+  + +       + FS   +  M R   GV+     D      +     E   
Sbjct: 651 VKLTDGNQEIVMGTAQGMSIRFSEQDVRSMGRSATGVKGIQLDDDDTVIDMDVVNPEND- 709

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    + Y +        +  RGG G        ++G  +S
Sbjct: 710 VLIVTAKGYGKRTPMSEYRIQNRGGKGIKTLNVTDKNGPIVS 751



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 67/175 (38%), Gaps = 6/175 (3%)

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +    V L A+  +E D L           I++ +  G +      ++ S       +  
Sbjct: 630 MNIRKVGLIAISIREDDELIGVKLTDGNQEIVMGTAQGMSIRFSEQDVRSMGRSATGV-K 688

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEE 648
            I L+ +  ++   V +    +L+V++KG       SE     R GK    +     +  
Sbjct: 689 GIQLDDDDTVIDMDVVNPENDVLIVTAKGYGKRTPMSEYRIQNRGGKGIKTLNVTDKNGP 748

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            + L V +  + + ++     L+  S++ I  M R  +GV+L + +D      + 
Sbjct: 749 IVSLKVVLNDEDLMIMTALGTLIRTSMEGISTMGRNTQGVKLINTRDDDTVSTVT 803



 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +++  G     P          G+ I+ L   + N  IV+  V  +   L+++++ G   
Sbjct: 712 IVTAKGYGKRTPMSEYRIQNRGGKGIKTLNVTDKNGPIVSLKVVLNDEDLMIMTALGTLI 771

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
                 I    R   G   +    ++ +  V +V
Sbjct: 772 RTSMEGISTMGRNTQGVKLINTRDDDTVSTVTRV 805


>gi|332306880|ref|YP_004434731.1| DNA gyrase, A subunit [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174209|gb|AEE23463.1| DNA gyrase, A subunit [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 897

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/803 (32%), Positives = 395/803 (49%), Gaps = 67/803 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KK
Sbjct: 6   QEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKISHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +ALID PE+SIE+L+EYI GPDFPT   I   R+ I E+YR GRG   +RA
Sbjct: 186 NLTEVVNGCIALIDKPELSIEELMEYIPGPDFPTAAFIS-GRKGIEEAYRTGRGKIYMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++ 
Sbjct: 245 RAEIEREDNGKETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R+   ++L+  ++  + M+T F +NM  L     P+V  L  ILK ++ HRREV+ R
Sbjct: 305 EVKRNESGEVLLNHLYSQTQMQTVFGINMVALDKT-QPKVFNLLDILKAFVLHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R+ F ++    R  IL+GL IA  NID IIA+I+    P                     
Sbjct: 364 RTVFELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQGWQLGDVSEML 423

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                             +    + LTE Q  AIL+LRL  L  LE  +I SE   LL  
Sbjct: 424 ERAGNDAARPDWLEPEFGIRDGLYYLTEQQAQAILDLRLNKLTGLEHEKILSEYKELLDL 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+ ++++ F           +            +  +   
Sbjct: 484 IAELLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDLIEREEVVVTLS 543

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               V         S +      SA   KE D ++  L A+T D IL  ST G+ Y L  
Sbjct: 544 REGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCFSTRGRLYWLKV 603

Query: 578 GNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
             L   S    G  I  ++ L  N+ I        ++    +L+ ++ G        +  
Sbjct: 604 YQLPLASRNARGRPIVNILPLEENERITAILPIQEFEEGKYVLMATANGTVKKTALVQYS 663

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID--------------- 676
                G   + ++  +++  V    G   + +  +  K++ F+                 
Sbjct: 664 RPRANGIIAVNLNDGDELIGVDITDGSSDIMLFSDAGKVVRFNEKARDSETGAVKIDPET 723

Query: 677 -----QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
                 +  M R   GVR    ++G     +     +G   + +    + +         
Sbjct: 724 GEEILALRPMGRTATGVRGIRLQEGQRVVSLIVPQGDGA-ILTATENGFGKRTPVEDYPA 782

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+GK + +
Sbjct: 783 KSRATQGVVSIKVSERNGKVVGA 805


>gi|319944279|ref|ZP_08018555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis
           ATCC 51599]
 gi|319742574|gb|EFV94985.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis
           ATCC 51599]
          Length = 905

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/807 (29%), Positives = 398/807 (49%), Gaps = 65/807 (8%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D++ + +   +E V  +SL   ++  +L YA+S I  RA+PD+RDG KPVHRR+++AM E
Sbjct: 6   DSM-DQDQFAKETV-PISLEQEMKRSFLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHE 63

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +   +   + KSAR+VG+V+GK HPHGD ++YD++VR+AQ F  RY L+ GQGNFG++DG
Sbjct: 64  LNNVWNRPYLKSARVVGDVMGKYHPHGDSAIYDTVVRMAQDFSLRYTLVDGQGNFGSVDG 123

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTE R+ ++A  ++  +++D VDF   Y+   SEP V P+K PNLL NG++GI
Sbjct: 124 DPPAAMRYTEIRLRKIASEMVVDIEKDTVDFGPNYDGSTSEPQVLPAKIPNLLINGSTGI 183

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AV MAT+IP HN+ E+  A L L++NP+ +I++L+E I  PDFPTG  ++     + E Y
Sbjct: 184 AVAMATNIPPHNLHEVVAACLLLLENPDATIDELIEKIPAPDFPTGA-LIYGVAGVREGY 242

Query: 244 RLGRGGFRVRARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           R GRG   +RA+   E++ +      I+V EIPYQV K+ L +KIAEL+  K+I  + DI
Sbjct: 243 RTGRGRVVMRAKTHFEDMDKAGNRQAIIVDEIPYQVNKAVLQQKIAELVNEKKIEGISDI 302

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES +    V+    R  + ++++ ++F L+ ++  F +NM  L     P+++ L  +L
Sbjct: 303 RDESDKQGMRVVIELKRGENAEVVLNNLFKLTQLQDSFGINMVALVD-GQPRLLNLKQVL 361

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + +LAHRREV+ RR+ + +     R  +L+GL +A +N+DE+I +I++   P        
Sbjct: 362 EAFLAHRREVVTRRTVYELNKARDRGHLLEGLAVAVVNVDEMIELIKSSPTPPVAKERLL 421

Query: 416 ----------------------------------VMVSRFSLTENQVDAILNLRLRSLRK 441
                                                  + L+E Q   IL +RL+ L  
Sbjct: 422 ARTWAAGIAAEMVERAAGDVSALRPEGIDPNAGLQPDGTYQLSEVQAGEILQMRLQRLTG 481

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE+ +I +E   ++     +  +L    +    I  E+  V E F       RR      
Sbjct: 482 LEQEKIVTEYREVVDRILDLLDILAKPARITAIIRDELTGVVEEFGGPEKDPRRSQIEL- 540

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKI 553
                     + +I  + + V +SN G+         RS +       A   K+ D +  
Sbjct: 541 ---NASEIDIEDLITPQDMVVTLSNSGYIKAQPLSEYRSQRRGGRGKQAASTKDDDWVDQ 597

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---Y 608
              A+T D IL  S  G+ Y L    +        G  I  +  L  N+ I        +
Sbjct: 598 LFIANTHDTILCFSDRGRVYWLKVWEVPQGSRASRGRPIVNMFPLAENEKITVVLPIKTF 657

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
           D    + + +S G       S+     + G   + +   + +       G+H V +  + 
Sbjct: 658 DDEHYVFMATSLGTVKKTALSDFSNPRKAGIIAVDLDEGDYLIGAAVTDGEHDVMLFSDA 717

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            K + FS   +  M R  +GVR  + ++G     +     E  + + +    Y +    +
Sbjct: 718 GKAVRFSEGDVRAMGRTARGVRGMALEEGQKVIAMLVADDERRSVLTATENGYGKRTPLI 777

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  +   R+G+ +++
Sbjct: 778 EHTRHGRGTKGMIAIQSSERNGRMVAA 804



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 8/215 (3%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +  +        +               + A+   EGD L  A        ++L S 
Sbjct: 657 FDDEHYVFMATSLGTVKKTALSDFSNPRKAGIIAVDLDEGDYLIGAAVTDGEHDVMLFSD 716

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVE 627
            GKA     G++ +       ++ +  L   Q ++   V D   + +L  +  G      
Sbjct: 717 AGKAVRFSEGDVRAMGRTARGVRGM-ALEEGQKVIAMLVADDERRSVLTATENGYGKRTP 775

Query: 628 ESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
             E   + R  K  + + S E+    +  ++   GD + ++     L+   +D+I EM R
Sbjct: 776 LIEHTRHGRGTKGMIAIQSSERNGRMVAAILVEEGDEIMLITTGGVLVRTRVDEIREMGR 835

Query: 684 G-KGVRLQSYKDGG-ISDVICFKICEGLTWIDSAG 716
             +GV L   ++G  +S V      +    + + G
Sbjct: 836 ATQGVTLIGVEEGDTLSRVQRVVGSDSPEVLAAVG 870


>gi|296396|emb|CAA50571.1| DNA gyrase [Staphylococcus aureus]
          Length = 886

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERNKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 GNDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLTW 711
           +    
Sbjct: 813 DADEV 817



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|160875516|ref|YP_001554832.1| DNA gyrase subunit A [Shewanella baltica OS195]
 gi|160861038|gb|ABX49572.1| DNA gyrase, A subunit [Shewanella baltica OS195]
 gi|315267703|gb|ADT94556.1| DNA gyrase, A subunit [Shewanella baltica OS678]
          Length = 916

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/815 (31%), Positives = 403/815 (49%), Gaps = 83/815 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI+ P +SIE+L+EYI GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D  
Sbjct: 241 IMRALADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +   ++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ ++ E +  +     RRT              + 
Sbjct: 480 LLEFIAGLLFILRSPERLMEVIKEELVQILEEYGDA-----RRTVINANEVDMSL---ED 531

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+         ++ +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L+  + I              +++ +S 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYAADKYIIMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID--- 676
           G       +        G   + +   +++  V    GD  + +     K++ F      
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRD 711

Query: 677 -----------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
                             +  M R   GVR    ++G     +     +G   +      
Sbjct: 712 SETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVPKGDGA-ILTVTENG 770

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +           R   G +  K   R+G  + +
Sbjct: 771 YGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGA 805


>gi|206561292|ref|YP_002232057.1| DNA gyrase subunit A [Burkholderia cenocepacia J2315]
 gi|198037334|emb|CAR53261.1| DNA Gyrase, subunit A [Burkholderia cenocepacia J2315]
          Length = 867

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/789 (31%), Positives = 379/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE +I++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLGNPEATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ESENAAAGGRSAYRPEGLNPAFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 RDVMAQIADLLDILARPERITTMIGEELTAVKAEFGDARRSRIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFIFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  ++ K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  T + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 788 ERNGKVVAA 796



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 738 GQQVIALLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|258620208|ref|ZP_05715247.1| DNA gyrase, subunit A [Vibrio mimicus VM573]
 gi|262171718|ref|ZP_06039396.1| DNA gyrase subunit A [Vibrio mimicus MB-451]
 gi|258587566|gb|EEW12276.1| DNA gyrase, subunit A [Vibrio mimicus VM573]
 gi|261892794|gb|EEY38780.1| DNA gyrase subunit A [Vibrio mimicus MB-451]
          Length = 893

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/817 (32%), Positives = 401/817 (49%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR+   P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E   +  +L S ++    I  E+  ++  FS +        T         A
Sbjct: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   L +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVV 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     EG   +    
Sbjct: 715 DENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKAEGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +  +        RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810


>gi|299541760|ref|ZP_07052083.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1]
 gi|298725498|gb|EFI66139.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1]
          Length = 821

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/761 (33%), Positives = 412/761 (54%), Gaps = 28/761 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +      VK +++   +E  +L YA+S I  RA+PD+RDG KPVHRRI++ M E+G    
Sbjct: 2   SEQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTAD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            A+KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KAYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE+RM+++A  +L+ +++D +D+ D Y+  + EP+V PS++PNLL NG +GIAVGMAT
Sbjct: 122 RYTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP H + E  +A +AL +NP I+ E+L+E I GPDFPTGG ++  R  I  +Y  GRG 
Sbjct: 182 NIPPHQLGETIDAVIALSENPAITTEELMEIIPGPDFPTGG-LILGRSGIRRAYETGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  +E+   G   I++ E+PYQV K++LIEKIAEL+  K+I  + ++RDES    
Sbjct: 241 IIIRAKVEIEQKANGKETILIHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  + ++++ +++  + M++ F +NM  L     P+V+ L  +L  +L H++
Sbjct: 301 MRVVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLV-NGQPKVLGLKEMLYHYLEHQK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
            ++ RR+ F ++  + R  IL+GL IA  +IDEIIAIIR      + KP ++ RFSL+E 
Sbjct: 360 VIIRRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMERFSLSER 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +I++E   L    +++ ++L   ++  + I  EI E+KE F
Sbjct: 420 QAQAILDMRLVRLSGLEREKIEAEYQELQVLIDELKAILADEEKIVDIIRTEILELKERF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           +       RRT              + +I  E   V +++ G+I+          K    
Sbjct: 480 ND-----TRRTEITSGGIEM--IEDEDLIPVENSVVTLTHNGYIKRLAANTYRSQKRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  +   E D ++  ++  T D IL  ++ GK +      +       +   I  L+++
Sbjct: 533 GVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPEFGRTAKGLPIVNLLNI 592

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + +        +D     +  +  G       S+       G   + +  ++ +  V
Sbjct: 593 EKGEKVTAMIRVASFDDDAYFIFTTKTGITKRTPVSQFANIRTNGLIAISLREDDDLISV 652

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
               G+  V +   +  L+ F  D I  M R   GVR    +DG     +   +  G   
Sbjct: 653 RLTDGEKQVIIGTRDGMLVRFQEDDIRSMGRTAGGVRGIKLRDGDEVVGMEI-VEPGQEI 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    + Y +  ++    L  RGGVG    +   ++G  ++
Sbjct: 712 LVVTEKGYGKRTSEEDYRLQSRGGVGLKTIQITDKNGPMVA 752



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 75/214 (35%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E      A ++ A  + +   +  +  G  +              L A+  +E D L  
Sbjct: 592 IEKGEKVTAMIRVASFDDDAYFIFTTKTGITKRTPVSQFANIRTNGLIAISLREDDDLIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                   ++++ + DG        ++ S           I L    ++V   + +   +
Sbjct: 652 VRLTDGEKQVIIGTRDGMLVRFQEDDIRSMGRTA-GGVRGIKLRDGDEVVGMEIVEPGQE 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRK 669
           +LVV+ KG      E +    +R G     +   +K   M  V  V G + + ++  N  
Sbjct: 711 ILVVTEKGYGKRTSEEDYRLQSRGGVGLKTIQITDKNGPMVAVKTVDGSEDLMLITINGM 770

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           L+   ++ I  + R  +GVRL    D  +   + 
Sbjct: 771 LIRMDVNDISLIGRSTQGVRLIRLGDDELVATVA 804


>gi|90581243|ref|ZP_01237041.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14]
 gi|90437614|gb|EAS62807.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14]
          Length = 887

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/803 (31%), Positives = 399/803 (49%), Gaps = 62/803 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA I++ +I+I++L+EYI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVINGCLAYINDEDITIDQLMEYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E    G   IVV EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRAKAEIEVEKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALD-NGQPKIFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ + ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 NHRREVVTRRTIYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +  +++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEEQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L+S ++    I  E+  VKE F+          +          
Sbjct: 475 EEYKALLDEIAELMYILSSSERLMEVIREELELVKEQFNDERRTEITAASHDIDMEDLIT 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      +A   KE D ++  L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHEGYVKYQVLSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L   S    G+ I  ++ L  N+ I        Y     + + ++ G  
Sbjct: 595 RGRMYWLKVYQLPLASRTARGKPIVNILPLEENERITAILPVREYTEDKFVFMATADGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID------ 676
                ++       G   + +   + +  V    GD  + +     K++ F         
Sbjct: 655 KKTPLTDFSRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAE 714

Query: 677 -----QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
                 +  M R   GVR     +G     +     +G   +      Y +         
Sbjct: 715 GNAKGGVRGMGRTAAGVRGIKLAEGDKVISLIVPHNDGD-VLTVTENGYGKRTELAEYPA 773

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+G+ + +
Sbjct: 774 KSRATQGVVSIKVSERNGRVVGA 796


>gi|258624431|ref|ZP_05719378.1| DNA gyrase, subunit A [Vibrio mimicus VM603]
 gi|262165509|ref|ZP_06033246.1| DNA gyrase subunit A [Vibrio mimicus VM223]
 gi|258583278|gb|EEW08080.1| DNA gyrase, subunit A [Vibrio mimicus VM603]
 gi|262025225|gb|EEY43893.1| DNA gyrase subunit A [Vibrio mimicus VM223]
          Length = 894

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/817 (32%), Positives = 401/817 (49%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR+   P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E   +  +L S ++    I  E+  ++  FS +        T         A
Sbjct: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   L +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVV 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     EG   +    
Sbjct: 715 DENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKAEGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +  +        RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810


>gi|78065625|ref|YP_368394.1| DNA gyrase subunit A [Burkholderia sp. 383]
 gi|77966370|gb|ABB07750.1| DNA gyrase subunit A [Burkholderia sp. 383]
          Length = 867

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/789 (31%), Positives = 379/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE +I++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLGNPEATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKAELMAKPWDSSLVREMLTRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                    +   + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ESENAAAGGRSAYRPEGLNPAFGMQVDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 REVMAQIADLLDILARPERITTMIGEELTSVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFIFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  ++ K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  T + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 788 ERNGKVVAA 796



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 738 GQQVIALLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|119385273|ref|YP_916329.1| DNA topoisomerase IV subunit A [Paracoccus denitrificans PD1222]
 gi|119375040|gb|ABL70633.1| DNA topoisomerase IV subunit A [Paracoccus denitrificans PD1222]
          Length = 747

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/753 (52%), Positives = 537/753 (71%), Gaps = 10/753 (1%)

Query: 1   MGVD-NISNS--NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  D N+ +       ++   +  L  A+ ERYL YALSTI  RA+PD RDG KPVHRRI
Sbjct: 1   MSDDPNVPDPTPPDPSQDQTTSEPLSRAIGERYLTYALSTIMNRALPDARDGLKPVHRRI 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + AM E+ L    AF+KSA+I G+V+G  HPHGD ++YD++ RLAQPF  RYPL+ GQGN
Sbjct: 61  LFAMRELRLSPTGAFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQPFAMRYPLVDGQGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FGNIDGD+ AA RYTEAR+T  AE +++G+ E+AVDFR  Y+    EP+V P+ FPNLL 
Sbjct: 121 FGNIDGDNPAASRYTEARLTAAAEALMEGLAENAVDFRPNYDGTLEEPIVLPAAFPNLLC 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG SGIAVGMAT++P HN+ E+ +A L LI  P+   + L+  + GPDFPTGG++VESRE
Sbjct: 181 NGASGIAVGMATNVPPHNLHEVIDACLHLIKAPDARDDTLVSIVPGPDFPTGGVLVESRE 240

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
           +I E+YR GRG  R+RARW VE++GRG W IVVTEIPYQVQKS+LIE++AE+I  K++P+
Sbjct: 241 TIAEAYRTGRGSLRLRARWSVEDLGRGQWQIVVTEIPYQVQKSKLIERLAEVIQLKKVPI 300

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           L D+RDESAED+RIVL P+ R++D + LM ++F +SD+E RF LNMNVL  GRVP+V  L
Sbjct: 301 LADVRDESAEDIRIVLEPRTRAVDAEQLMAALFRVSDLEVRFGLNMNVLIDGRVPKVCSL 360

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             +L+ +L HRREVL RRS+ R+  I  R+E+L+G +IA+LN+D +I IIR+ED PK VM
Sbjct: 361 KEVLRAFLDHRREVLVRRSNHRLDKIAARLEVLEGYMIAFLNLDRVIEIIRHEDDPKAVM 420

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++ F L++ QV+AILN+RLR+LR+LEE ++++E +NL  E+E + ++L     QW +IA 
Sbjct: 421 IAEFKLSDVQVEAILNMRLRALRRLEEIELRAEHENLTREREGLAAMLADEGAQWARIAE 480

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+RE +  F KS   G+RRT   E +         AMIE+EPITV++S  GWIR++K H 
Sbjct: 481 ELRETRAKFGKSASGGQRRTEIGE-AGEVAEIDMDAMIEREPITVILSKMGWIRAMKGHQ 539

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
              + + FK+GD   +ALHA TTD++++ + +G+ YTLPA NL  GRG GE ++L+IDL 
Sbjct: 540 PLDAEVKFKDGDGPFMALHAETTDKLMVFAANGRFYTLPANNLPGGRGMGEPLRLMIDLP 599

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           ++  ++  F +    + LV S  G+ F+V  ++I+A TR GK  L      +  L  +VT
Sbjct: 600 NDAAVIDMFPWRDGERYLVASKAGDGFVVAGADILAQTRAGKQVLN----GEAALCRRVT 655

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           GDHVAVVG+NRKLL+F + ++PEM+RGKGVRLQ YKDGG+SD +C  + EGL W ++ GR
Sbjct: 656 GDHVAVVGQNRKLLVFPLSELPEMARGKGVRLQKYKDGGLSDAVCITLAEGLRWQETGGR 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              RSE DL  WLGKR G G + P+GFPR  +F
Sbjct: 716 --TRSEPDLTEWLGKRAGAGYMAPRGFPRDNRF 746


>gi|126174283|ref|YP_001050432.1| DNA gyrase subunit A [Shewanella baltica OS155]
 gi|153000807|ref|YP_001366488.1| DNA gyrase subunit A [Shewanella baltica OS185]
 gi|217973234|ref|YP_002357985.1| DNA gyrase subunit A [Shewanella baltica OS223]
 gi|125997488|gb|ABN61563.1| DNA gyrase subunit A [Shewanella baltica OS155]
 gi|151365425|gb|ABS08425.1| DNA gyrase, A subunit [Shewanella baltica OS185]
 gi|217498369|gb|ACK46562.1| DNA gyrase, A subunit [Shewanella baltica OS223]
          Length = 916

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/815 (31%), Positives = 403/815 (49%), Gaps = 83/815 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI+ P +SIE+L+EYI GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D  
Sbjct: 241 IMRALADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +   ++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ ++ + +  +     RRT              + 
Sbjct: 480 LLEFIAGLLFILRSPERLMEVIKEELVQILDEYGDA-----RRTVINANEVDMSL---ED 531

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+         ++ +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L+  + I              +++ +S 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYAADKYIIMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID--- 676
           G       +        G   + +   +++  V    GD  + +     K++ F      
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRD 711

Query: 677 -----------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
                             +  M R   GVR    ++G     +     +G   +      
Sbjct: 712 SETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVPKGDGA-ILTVTENG 770

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +           R   G +  K   R+G  + +
Sbjct: 771 YGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGA 805


>gi|218260370|ref|ZP_03475726.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224561|gb|EEC97211.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii
           DSM 18315]
          Length = 869

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/759 (30%), Positives = 395/759 (52%), Gaps = 23/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY ++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ +  +A ID   E+ +  L++YI  PDFPTG  I      + +++  GRG   +
Sbjct: 184 HNLSEVLDGCMAFIDARGEMEVADLMQYIKAPDFPTGATIY-GYAGVKDAFETGRGRIIL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  + E       I++TEIPY V K+ LI+ IA+L+  KRI  + ++ DES      +
Sbjct: 243 RGKAEI-ETEGNHEKIIITEIPYLVNKAELIKYIADLVNEKRIEGISNVNDESDRSGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +  +++  ++ L+ +++ F +N   L     P+ + L  ++K ++ HR EV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALV-NGRPRQLNLKDLIKAFVDHRHEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ + ++  + R  IL+GL+IA  NIDE+IAII++     +    ++ RFSL+E Q  
Sbjct: 361 IRRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMERFSLSEIQSR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E + +      +  +L +       I  E++E+K+ +   
Sbjct: 421 AIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLKEILENDDLCMKVIKDELKEIKDKYGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +         A  +  +       +  +     R+     V       ++ D
Sbjct: 481 RKTDIVYASEELNPEDFYADDEMIITISHMGYIKRTPLSEFRAQGRGGVGAKGSETRDED 540

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF- 606
            ++    A     +L+ +  GK Y L    +  G  + +  AIQ L+++  +  +     
Sbjct: 541 FVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGAKNSKGRAIQNLLNIEPDDKVNAFIR 600

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  LL  + KG              + G   + +  ++ +  V    G
Sbjct: 601 VKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIEVCMTNG 660

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD---GGISDVICFKICEGLTWID 713
            + V +   N + + F  + +  M R   GVR  +  D     +  ++C K  E  T + 
Sbjct: 661 NNEVLIANRNGRAIRFHENAVRVMGRTASGVRGMTLDDDPNDEVVGMVCIKDKEKETVLV 720

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +  N     +  RGG G        ++GK ++
Sbjct: 721 VSEQGYGKRSNIEDYRITNRGGKGVKTINITEKTGKLVA 759


>gi|50120140|ref|YP_049307.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043]
 gi|49610666|emb|CAG74111.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043]
          Length = 879

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/793 (33%), Positives = 395/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----LAREITPVTIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSRIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRVPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  IS+E L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVVNGCLAYIDDENISLEGLMEHITGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKIYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++T F +NM  L     P++MPL  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSQTQLQTSFGINMVAL-HQGQPKIMPLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LTE Q  AIL+LRL+ L  +E  ++
Sbjct: 415 WELGTVATMLERAGDDAARPEWLEPEFGIREGHYYLTEQQAQAILDLRLQKLTGMEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E  +LLAE  ++  +LNS ++    I  E+  +K  +S          T         
Sbjct: 475 LDEYKDLLAEIAELLYILNSPERLMEVIREELEAIKTQYSDGRRTEITANTADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G D   +     K++ FS   +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  + +       +     EG   +      + +           R   G + 
Sbjct: 715 GRTATGVRGINLQGEDRVVSLIIPRGEGD-ILTVTQNGFGKRTAVSEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|282902637|ref|ZP_06310530.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160]
 gi|282918074|ref|ZP_06325824.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282921296|ref|ZP_06329014.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427]
 gi|283767796|ref|ZP_06340711.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19]
 gi|282315711|gb|EFB46095.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427]
 gi|282318359|gb|EFB48719.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282597096|gb|EFC02055.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160]
 gi|283461675|gb|EFC08759.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19]
 gi|298693328|gb|ADI96550.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED133]
          Length = 886

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 GNDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLTW 711
           +    
Sbjct: 813 DADEV 817



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|49474341|ref|YP_032383.1| DNA topoisomerase IV subunit A [Bartonella quintana str. Toulouse]
 gi|49239845|emb|CAF26238.1| Topoisomerase IV subunit a [Bartonella quintana str. Toulouse]
          Length = 749

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/748 (61%), Positives = 595/748 (79%), Gaps = 2/748 (0%)

Query: 6   ISNSNTLV--EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+   L   +E+++ + LRFAL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  
Sbjct: 1   MSDKMNLPFDKEHIEPIELRFALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRL 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L+   ++ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LKLNPEQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EPVV P  FPNLLANG+SGI
Sbjct: 121 DNAAAMRYTEARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP HN  E+C+AAL LI +P+ + EKL ++++GPDFPTGGI+VE ++SI ESY
Sbjct: 181 AVGMATSIPPHNAAELCDAALHLIAHPDANDEKLNQFVLGPDFPTGGILVEPKKSIEESY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R+GRG FR+R+RW  E   RGS+ I+VTEIPYQVQKSRLIEK AEL++A+R+P+LEDI D
Sbjct: 241 RIGRGFFRLRSRWHQETGSRGSYVIIVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAED+RIVL PKNR++DP+LLMES+F L+D E RFPLN+NVLS+G+VP V+ L   L++
Sbjct: 301 ESAEDIRIVLVPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLSLGKVPNVLSLRESLQQ 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL HR++VL RRS++R+  ID R+EIL G LIAYLN+DE+I IIR ED+PK  +++ F L
Sbjct: 361 WLEHRQQVLIRRSTYRLNEIDCRLEILHGYLIAYLNLDEVIQIIREEDEPKKELINCFEL 420

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TENQ +AILN+RLRSL KLEE++I+ E D L A+KEK+ +LL S  +QW  I+ EIR+V+
Sbjct: 421 TENQAEAILNMRLRSLHKLEEFEIRKEFDALKADKEKLQNLLASSTKQWKMISEEIRKVR 480

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           +IF   T LG+RRTTF E  R     + QAMIEKEP+T+VIS +GW+R+L+ H  D  AL
Sbjct: 481 KIFGPETLLGKRRTTFEEAPRHAIDDIHQAMIEKEPVTIVISEKGWMRALRGHLSDYKAL 540

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FKEGD LK+A  A TTD+I ++ST GK + + A +L  GRGHGE I++L+D++   DI+
Sbjct: 541 SFKEGDCLKLAFPAFTTDKITMISTGGKFFCINANDLPGGRGHGEPIRILVDMDDEHDIL 600

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           TAFV++   KLL++SS GN FIV  +E+IANTRKGK  + V   +K+KL + V GDH+AV
Sbjct: 601 TAFVHNVEEKLLLISSYGNGFIVPATEVIANTRKGKQVMNVKFLDKVKLCIPVKGDHLAV 660

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           +GENRK+LIF+I+QIPEMSRGKGVRLQ YK+GG+ D   F + EGL+W D+A RS+NR  
Sbjct: 661 IGENRKMLIFAIEQIPEMSRGKGVRLQRYKEGGVVDAKTFNLSEGLSWQDTAERSFNRQA 720

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +DL+ W+G R GVG +VPKGFP+SGKF+
Sbjct: 721 HDLIEWMGTRAGVGRMVPKGFPKSGKFI 748


>gi|197116407|ref|YP_002136834.1| DNA gyrase subunit A [Geobacter bemidjiensis Bem]
 gi|197085767|gb|ACH37038.1| DNA gyrase, A subunit [Geobacter bemidjiensis Bem]
          Length = 836

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/747 (33%), Positives = 392/747 (52%), Gaps = 15/747 (2%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            +V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR + AM +M  D+   +KKSAR
Sbjct: 8   VSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSAR 67

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTE RM 
Sbjct: 68  VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRME 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           Q+A  +L  +D++ V +   Y++   EP+V PSKFPNLL NG++GIAVGMAT+IP HN+ 
Sbjct: 128 QLAHELLADIDKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLS 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +  +A+IDNP+++ E+L+E I GPDFPTGG  +  RE I+++Y  GRG  ++RA+  
Sbjct: 188 EVIDGIVAIIDNPQLTFEELVELIPGPDFPTGG-FIYGREGIMKAYSTGRGIIQMRAKVQ 246

Query: 258 VE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           +E +       IVVTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES  +   V+   
Sbjct: 247 IETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  +P +++  ++  + M++ F + M  +   R P+V+ L   +  ++ HR+E++ RR+
Sbjct: 307 KKDENPTIILNHLYKQTQMQSSFGIIMLAIVNSR-PRVLTLRETIDFFIEHRKEIVTRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  N+DE+IA+I+    P       + RF L++ Q  AIL+
Sbjct: 366 IFDLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMERFGLSDLQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +I  EL  +L    ++  +L S  +    I  E+ E+K+ F       
Sbjct: 426 MRLHRLTGLEREKIMEELREILKYIARLKEILASEAEILKIIVGELVELKDKFGDKRRSE 485

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
               T               +       +  +     R+ +      + +  KE D ++ 
Sbjct: 486 IVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTGMKTKEEDFVEQ 545

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS- 610
              A T D ++  +  GK Y L    +        G+AI  L++L  N+ I T       
Sbjct: 546 LFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGKAIVNLLNLAANEKITTILPVKEF 605

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGEN 667
                +++ +  G        E       G   + +   +K+  V    G   V +   N
Sbjct: 606 VDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLDEGDKLITVALTDGKQDVLLASAN 665

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE--GLTWIDSAGRSYNRSEN 724
            K + F  + +  + R  +GVR  + +   +   +          T        Y +   
Sbjct: 666 GKAIRFKEEDVRTVGRVSRGVRGMTLEGEDVVIGMEILNENFTDSTIFTVTENGYGKRTE 725

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                   RGG G +  K   R+G  +
Sbjct: 726 ISEYRSQSRGGKGVITIKTTERNGNVV 752



 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 73/196 (37%), Gaps = 10/196 (5%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+     +         + A++  EGD L           +LL S +GKA      ++ +
Sbjct: 619 VVKKTNMMEYSHPRVGGIIAVNLDEGDKLITVALTDGKQDVLLASANGKAIRFKEEDVRT 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                  ++ +  L     ++   + +       +  V+  G     E SE  + +R GK
Sbjct: 679 VGRVSRGVRGM-TLEGEDVVIGMEILNENFTDSTIFTVTENGYGKRTEISEYRSQSRGGK 737

Query: 640 TFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
             + + + E+   +  + +V  D  + ++ +  K+L   +     + R  +GVRL   K+
Sbjct: 738 GVITIKTTERNGNVVDIKQVNDDNDLMLITDQGKILRVPVAGFSIIGRNTQGVRLM-VKE 796

Query: 695 GGISDVICFKICEGLT 710
                V   ++ E   
Sbjct: 797 ENERVVAVARLAEKEE 812


>gi|309781037|ref|ZP_07675775.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA]
 gi|308920103|gb|EFP65762.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA]
          Length = 889

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/796 (30%), Positives = 383/796 (48%), Gaps = 63/796 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR +++M E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ V+F   Y+  ++EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NPE ++++L+E I  PDFPT G I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLRNPEATVDELIELIPAPDFPTAG-IIYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVD-GQPRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           F ++    R  IL+GL +A  NIDE IAII+    P                        
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVRA 427

Query: 415 ---------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F                +          
Sbjct: 488 VMAQIADLLDILARPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLITPQDLV 547

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 548 VTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLY 607

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    +        G  I  +  L+  + I        +D    + + +SKG       
Sbjct: 608 WLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKGTVKKTAL 667

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E     + G   + +   + +       G H V +  +  K + F  + +  M R  +G
Sbjct: 668 TEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG 727

Query: 687 VRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           VR  + ++      +     E           + + +    Y +           RG  G
Sbjct: 728 VRGMNLEENQQVIAMLVAPAETAGEGAQSVAGSVLTATENGYGKRTPISEYTRHGRGTKG 787

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK +++
Sbjct: 788 MIAIQTSERNGKVVAA 803



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 661 TVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP 720

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L  NQ ++   V  +             +L  +  G       SE  
Sbjct: 721 MGRQARGVRGM-NLEENQQVIAMLVAPAETAGEGAQSVAGSVLTATENGYGKRTPISEYT 779

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     + + +   +    D + ++     L+   +D+I EM R  +GV
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGV 839

Query: 688 RLQSYKDG 695
            L S  +G
Sbjct: 840 TLISVGEG 847


>gi|329298018|ref|ZP_08255354.1| DNA gyrase subunit A [Plautia stali symbiont]
          Length = 876

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/793 (32%), Positives = 390/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G
Sbjct: 1   MSD----LAREIAPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VY+S+VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM +++  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKISSELLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA I++  IS+E L+E+I GPDFPT    +  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAFIEDENISVEGLMEHITGPDFPTAA-FINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARGEIETDAKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISGLRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P++M L  I++ +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKIMTLKEIIEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKSGLLAQS 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   R+ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S ++    I  E+  +++ F  +        +         
Sbjct: 475 LDEYKELLDQIAELIHILQSAERLMEVIREELVAMRDQFGDARRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQQLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y     + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFNIFMATADGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                  E       G   + +  ++++  V    G D   +     K++ F+   +  M
Sbjct: 655 VKKTALQEFSRPRSAGIIAINLREDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +G     +     EG   +      Y +   +       R   G + 
Sbjct: 715 GRSASGVRGIRLAEGDKVVSLIVPREEGA-ILTVTQNGYGKRTANSEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGPVVGT 786


>gi|206889694|ref|YP_002247895.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741632|gb|ACI20689.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 826

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/765 (34%), Positives = 404/765 (52%), Gaps = 29/765 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV  V++   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM   GL  G  + K 
Sbjct: 3   NVLKVNIEEEMKTSYLDYAMSVIIGRALPDVRDGLKPVQRRILYAMFREGLLAGKKYSKC 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+ K HPHGDQ+VYD+LVRLAQ F  RYPLI GQGNFG+IDGD  AAYRYTEAR
Sbjct: 63  AGVVGEVLKKYHPHGDQAVYDALVRLAQDFNMRYPLIDGQGNFGSIDGDPPAAYRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++AE +LQ +D++ V F   ++    EP+V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 123 LTKIAEELLQDIDKETVPFAPNFDATTQEPLVLPARIPNLLINGSSGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A + L++NP+IS+E+LLE++ GPDFPTGG I    E I + Y  GRG  R+RA+
Sbjct: 183 LNEIVDALIKLLENPQISMEELLEFVKGPDFPTGGTIY-GIEGIRDLYLTGRGLIRIRAK 241

Query: 256 WCVE------------------EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             +E                  E       I++TEIPYQV K++LIEKIAEL+  K+I  
Sbjct: 242 VKIERETKGKKSKEVPLFEIEPEGKAFKEKIIITEIPYQVNKAKLIEKIAELVREKKIEG 301

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + +IRDES  +   V+    +   P++++ +++  + MET F   +  +     P+++ L
Sbjct: 302 ITEIRDESNREGIRVVLELKKGEMPEVVLNNLYKHTQMETTFGGILLAIVD-GQPRILNL 360

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
              L E+L HR++V+ +R++F ++  + +  IL GL IA  N+DE+I+IIR    P+   
Sbjct: 361 KEALWEFLKHRKDVVIKRTAFDLKKAEHQAHILLGLKIAVENLDEVISIIRKSQNPEEAK 420

Query: 418 VSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
           +   +   LTE Q  AIL++RL+ L  LE  +I  + + +L E E++ ++L S +   N 
Sbjct: 421 MKLMNRFPLTEIQAQAILDMRLQRLTGLEREKIIQDYETILKEIERLKAILESEELVRNI 480

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  E+ E+K+ +           T               +       +  ++    RS K
Sbjct: 481 IKDELIEIKQKYGDERKTEIVTETKEINIEDLITQEDMVITLTHLGYIKRTSLSDYRSQK 540

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                L+ +     D L+  L   T D I+  S  G+ Y L    +        G+AI  
Sbjct: 541 RGGKGLTPMETVTDDYLESVLIGSTHDHIMFFSNFGRVYCLKVYQIPEAGRVSKGKAIVN 600

Query: 593 LIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L+ L   + I TA V        L++ + KG        E     +KG   + +   +++
Sbjct: 601 LLPLQEGEKITTALVCKDIEEGYLMMFTKKGFVKKTSLEEFKNIRQKGVIAIDLEEGDEL 660

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V K TG + + +  +    + FS   +  M R  +GV    + +     V    + EG
Sbjct: 661 ISVRKTTGNNQLIIATKMGMAVRFSEIDVRPMGRTARGVIGIRFSEPEDEVVSADVVSEG 720

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +    +   +        L  RGG G    K   ++G  +SS
Sbjct: 721 SFVLTITEKGIGKKTPIEEYRLQHRGGTGVKNIKLSLKTGNVVSS 765



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 62/210 (29%), Gaps = 6/210 (2%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
              +++  +        +               + A+  +EGD L         +++++ 
Sbjct: 616 CKDIEEGYLMMFTKKGFVKKTSLEEFKNIRQKGVIAIDLEEGDELISVRKTTGNNQLIIA 675

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A      ++         +  +       ++V+A V      +L ++ KG     
Sbjct: 676 TKMGMAVRFSEIDVRPMGRTARGVIGIRFSEPEDEVVSADVVSEGSFVLTITEKGIGKKT 735

Query: 627 EESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
              E     R G       L + +   +  +     D + +   + K++   + QI    
Sbjct: 736 PIEEYRLQHRGGTGVKNIKLSLKTGNVVSSLQVKEDDEIIICSSS-KMIRLKVSQIRPQG 794

Query: 683 RG-KGVRLQSYKDGGISDVICFKICEGLTW 711
           R   GVRL           +   +      
Sbjct: 795 RATTGVRLIDLSADDTVVSMGRILEGEDDV 824


>gi|70731664|ref|YP_261406.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf-5]
 gi|68345963|gb|AAY93569.1| DNA gyrase, A subunit [Pseudomonas fluorescens Pf-5]
          Length = 889

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/795 (32%), Positives = 413/795 (51%), Gaps = 65/795 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE+++++L++YI GPDFPT   I+  RE I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAA-IINGREGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + ++  F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQAVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++ +E   
Sbjct: 422 MTMVERAGADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +LNS  +    I  E+  ++  +        RRT   +   A        
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELEVIRAEYGD-----VRRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           MI +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +LL
Sbjct: 534 MIPEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSK 620
            S+ GK Y L    +        G  +  L+ L+  + I T    +       + + ++ 
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLDEGEYITTMLPVEEYTEGHYIFMATAN 653

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G                G   L++   + +       G+  V +  +  K+  F    + 
Sbjct: 654 GTVKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVR 713

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR     +G     +     EG   + ++ R + +          KRGG G 
Sbjct: 714 AMGRTARGVRGMRLAEGQKLISMLI-PEEGSQILTASERGFGKRTAIGEFPEYKRGGQGV 772

Query: 739 LVPKGFPRSGKFLSS 753
           +      R+G+ + +
Sbjct: 773 IAMVSNERNGRLVGA 787


>gi|304315546|ref|YP_003850691.1| DNA gyrase subunit alpha [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777048|gb|ADL67607.1| DNA gyrase, A subunit [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 815

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/758 (33%), Positives = 411/758 (54%), Gaps = 15/758 (1%)

Query: 6   ISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +S++NT  EE  V  V +   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++AM+ +
Sbjct: 1   MSDNNTNNEEMRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNGL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL     +KKS  +VGEV+GK HPHGD +VYD++VR+AQ F  R  L+ G GNFG+IDGD
Sbjct: 61  GLTPDKPYKKSVSVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDGD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPN+L NG+ GIA
Sbjct: 121 PAAAMRYTEARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNILVNGSQGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +A IDNP I+ E L++YI GPDFPTGG ++  ++ I E+Y 
Sbjct: 181 VGMATNIPPHNLGEVIDGIIAYIDNPYITTEGLMKYIKGPDFPTGG-LIVGKDGIRETYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   VRA+  +EE   G   IV+TE+PY V KS+L+EKIAEL+  K I  + D+RDE
Sbjct: 240 TGRGKIIVRAKAEIEEHN-GRNRIVITEVPYMVIKSKLVEKIAELVRDKHIEGISDLRDE 298

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R ++P +++  ++M + M+  F   M  L     P+++ L+ I++++
Sbjct: 299 SDRNGMRIVIELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVD-GAPKILSLNQIIEKY 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRF 421
           + H+ +V+ RR+ F +Q  + R  IL+GL IA  +IDE+I +IR+          ++ +F
Sbjct: 358 VDHQVDVITRRTRFELQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKKNLMDKF 417

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q  AI+++RL  L  LE  +++ EL+ L  + E++  +L   K+    I  E++E
Sbjct: 418 GLSDKQSQAIVDMRLGRLTGLERQKVEDELNELYRKIEELKGILADEKKVLEIIKKELKE 477

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           +K+ FS                          +       +        +S K     +S
Sbjct: 478 IKDKFSSERKTHIVAKVDEMDIEDLVQLEDAVVTMTHFGYIKRMPLDAYKSQKRGGKGIS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +  +E D ++      T DR+L  +  GK Y+L   ++       +  AI  LI ++ +
Sbjct: 538 GISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIVNLIQIDQD 597

Query: 600 QDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + +        +     +++ + KG     E  +     + G T +K+   +++  V+  
Sbjct: 598 EKVSAVIPIKKSVKAKYVVMCTKKGIIKKTEIDDFPKIKKSGNTAIKLDDGDELINVMLT 657

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            GD  + +   N   + F  + +  M R  +GV   S +D     V    I E    +  
Sbjct: 658 NGDREIIIGTANGYCIRFHENNLRPMGRQARGVIAISLRDDDYV-VEMDLINEDNEILVV 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +  +        R G G +  K   ++GK +S
Sbjct: 717 TENGYGKRSDVKEYRSQTRAGKGIIATKITQKTGKLVS 754



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 64/481 (13%), Positives = 149/481 (30%), Gaps = 21/481 (4%)

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + A             I+   + +QV       +       +R  +LE ++       
Sbjct: 335 AIMLALVDGAPKILSLNQIIEKYVDHQVDVITRRTRFELQKAEERAHILEGLKIALDHID 394

Query: 310 RIVLFPKNRSLDPDLLMESI--FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            ++   ++   +P      +  F LSD +++  ++M +  +  + +    D + + +   
Sbjct: 395 EVINVIRSSKTEPIAKKNLMDKFGLSDKQSQAIVDMRLGRLTGLERQKVEDELNELYRKI 454

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
                      ++  I ++         +      I+A +   D    V +    +T   
Sbjct: 455 EELKGILADEKKVLEIIKKELKEIKDKFSSERKTHIVAKVDEMDIEDLVQLEDAVVTMTH 514

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              I  + L + +  +         +   +    +    +   +      + +       
Sbjct: 515 FGYIKRMPLDAYKSQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTI 574

Query: 488 KSTDLGRRRT-------TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------LK 534
              + GR+            +      A +      K    V+ + +G I+        K
Sbjct: 575 DIPESGRQAKGTAIVNLIQIDQDEKVSAVIPIKKSVKAKYVVMCTKKGIIKKTEIDDFPK 634

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
                 +A+   +GD L   +  +    I++ + +G        NL         +   I
Sbjct: 635 IKKSGNTAIKLDDGDELINVMLTNGDREIIIGTANGYCIRFHENNLRPMGRQARGVI-AI 693

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMK 651
            L  +  +V   + +   ++LVV+  G     +  E  + TR GK  +         K+ 
Sbjct: 694 SLRDDDYVVEMDLINEDNEILVVTENGYGKRSDVKEYRSQTRAGKGIIATKITQKTGKLV 753

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            ++ V+  D + ++  N  L+   I  I +M R   GV L    DG           +  
Sbjct: 754 SIMSVSEKDELMIISANGILIRTRIADISKMHRDASGVTLMKLDDGDRVVSTAKIDNDDD 813

Query: 710 T 710
            
Sbjct: 814 Q 814


>gi|82749783|ref|YP_415524.1| DNA gyrase subunit A [Staphylococcus aureus RF122]
 gi|82655314|emb|CAI79694.1| DNA gyrase subunit A [Staphylococcus aureus RF122]
          Length = 886

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 403/762 (52%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G     IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGRRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLTW 711
           +    
Sbjct: 813 DADEV 817



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|114320084|ref|YP_741767.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226478|gb|ABI56277.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1]
          Length = 862

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/789 (33%), Positives = 411/789 (52%), Gaps = 63/789 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V+L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  ++KKS
Sbjct: 7   EILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDWNKSYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+AAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYMLVDGQGNFGSIDGDAAAAMRYTEVR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L  ++++ VD+ D Y+  +SEP V P++ PNLL NG SGIAVGMAT+IP HN
Sbjct: 127 MSRLAHELLADIEKETVDYLDNYDGSESEPTVLPTRVPNLLVNGGSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+ +A +ALID+  + ++ L++Y+ GPD PT G I+     I E+YR GRG   +RAR
Sbjct: 187 IREVIDACVALIDDDSLDVDALMQYLPGPDLPTAG-IINGTAGIHEAYRTGRGRMVMRAR 245

Query: 256 WCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +EE    G   I+V+E+PYQV K+RL+EKIAEL+  KR+  + ++RDES +D   V+ 
Sbjct: 246 ARIEEDDKSGKARIIVSELPYQVNKARLLEKIAELVKEKRVEGITELRDESDKDGIRVVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L     P+++ L  IL  ++ HRREV+ R
Sbjct: 306 ELRRGEVGEVVLNNLYQHTQLQTVFGINMVALVD-GQPKLLNLRQILDAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----------------- 417
           R+ F ++    R  +L+GL +A  NID +IA+I+    P                     
Sbjct: 365 RTIFELRKARNRAHVLEGLAVALANIDPVIALIKASPGPAEAKTALMSRVWAPGMVTDML 424

Query: 418 ------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                + L+  Q  AIL LRL  L  LE+ +I  E   LL +  
Sbjct: 425 ERADATTPDDLSPDVGLGEDGYRLSAAQAQAILELRLHRLTGLEQEKILEEYRGLLEQIG 484

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  +L SG++    I  E+  ++E +        RR+     +        + +I  + 
Sbjct: 485 ELIHILESGERLMEVIREELVAIREQYGDE-----RRSEIIPQALD---LTLEDLITPQD 536

Query: 520 ITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S+ G+ +S    S           SA   K+ D +     A+T D +L  S+ GK
Sbjct: 537 VVVTLSHSGYAKSQPLDSYRAQRRGGRGKSATAMKDADFVDKLFVANTHDTLLCFSSHGK 596

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L     +  G+ I  L+ L  ++ I        +D    + + +  G     
Sbjct: 597 CYWLKVYELPQGSRQSRGKPIVNLLPLEPDERINAVLPVQEFDDAHFVFMATHNGTVKKT 656

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-G 684
             S        G   L + +++ +  V    G   V +V +  K + F   Q+  M R  
Sbjct: 657 PLSHFSRPRSNGIIALDLRADDWLVDVAITDGSRDVMLVSDAGKAIRFEESQVRAMGRTA 716

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            GVR    + G    VI   I +    + +    Y +           RGG+G +  +  
Sbjct: 717 AGVRGIRLEPGQR--VIALLILDDGDILSATANGYGKRTPVEEYPRRGRGGMGVICIQTS 774

Query: 745 PRSGKFLSS 753
            R+G+ + +
Sbjct: 775 DRNGEVVGA 783



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 9/188 (4%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +     TV  +        +S+   + AL  +  D L        +  ++L+S  GKA 
Sbjct: 645 FMATHNGTVKKTPLSHFSRPRSN--GIIALDLRADDWLVDVAITDGSRDVMLVSDAGKAI 702

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 + +      A    I L   Q ++   + D    +L  ++ G        E   
Sbjct: 703 RFEESQVRAMGRTA-AGVRGIRLEPGQRVIALLILDDGD-ILSATANGYGKRTPVEEYPR 760

Query: 634 NTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
             R G   + +     + E +  V     D + ++  +  L+   +  I  +SR  +GV+
Sbjct: 761 RGRGGMGVICIQTSDRNGEVVGAVQVADEDEIMLITRHGTLVRTPVADISRLSRNTQGVK 820

Query: 689 LQSYKDGG 696
           L S  +  
Sbjct: 821 LISLDEDE 828



 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/93 (11%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G     P          G  +  +   + N ++V A       ++++++  G     
Sbjct: 745 TANGYGKRTPVEEYPRRGRGGMGVICIQTSDRNGEVVGAVQVADEDEIMLITRHGTLVRT 804

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
             ++I   +R   G   + +  +E +  + ++ 
Sbjct: 805 PVADISRLSRNTQGVKLISLDEDETLVGLERIE 837


>gi|326316784|ref|YP_004234456.1| DNA gyrase subunit A [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373620|gb|ADX45889.1| DNA gyrase, A subunit [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 884

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/808 (30%), Positives = 396/808 (49%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L ++ +P+ ++++++E I  PDFPT G I+     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHVLRHPDATVDEIMEIIPAPDFPTAG-IIYGINGVKEGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRARCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L     P++  L  ++  +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVD-GQPRLCNLRDLIVVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------------ 411
           EV+ RR+ F ++    R  +L+GL +A  NIDE I IIR                     
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQL 419

Query: 412 ---------------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                      +        + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  +++A  E +  +L+  ++    I  E+  +K  F +   LG RRT       
Sbjct: 480 DKIVAEYKDIMAVIEDLLDILSKPERVSVIIGDELTAIKAEFGQHK-LGMRRTLV---EH 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+         R+ K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRT 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADRFVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  + R  +GVR    +DG     +     E  + + +    Y +  + 
Sbjct: 716 GGKAVRFDENDVRPLGRAARGVRGMMLEDGQSVIAMLVAEDETQSVLTATENGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      RG  G +  +   R+GK +++
Sbjct: 776 VEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 78/262 (29%), Gaps = 14/262 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G +   
Sbjct: 595 IANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMF---------PLQEGEKINV 645

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++   +       +        +               + A++  +GD L  A    
Sbjct: 646 VLPLTGDMRTFPADRFVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTD 705

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               ++L S  GKA      ++         ++ ++  +    I      D T  +L  +
Sbjct: 706 GQHDVMLFSDGGKAVRFDENDVRPLGRAARGVRGMMLEDGQSVIAMLVAEDETQSVLTAT 765

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFS 674
             G        E   + R  K  + +   E+   VV  T     D + ++ +   L+   
Sbjct: 766 ENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEIMLITDKGVLVRTR 825

Query: 675 IDQIPEMSRG-KGVRLQSYKDG 695
           + +I E+ R  +GV L +  +G
Sbjct: 826 VAEIRELGRATQGVTLIALDEG 847



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 37/104 (35%), Gaps = 2/104 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
            T  +L  + +G                 + +  +     N  +V A +  +  ++++++
Sbjct: 757 ETQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEIMLIT 816

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
            KG       +EI    R   G T + +    K+  + ++  + 
Sbjct: 817 DKGVLVRTRVAEIRELGRATQGVTLIALDEGAKLSGLQRIVEND 860


>gi|157375440|ref|YP_001474040.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
 gi|157317814|gb|ABV36912.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 904

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/807 (31%), Positives = 390/807 (48%), Gaps = 67/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLVDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +VA  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKVAHQLLADLEKETVDFVPNYDGTEFIPSVLPTRIPTLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI+NP+++I +L+EYI GPDFPT   I+  R+ I+++Y  GRG  
Sbjct: 182 IPPHNINEVVSGCLALIENPDLTINELMEYIPGPDFPTAA-IINGRKGIIDAYHTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  VE    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRAKADVETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVVEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARDRAHILESLAIALANIDPIIALIKASPTPAEAKVKLIAEGWELGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +   R+ LTE Q  AIL+LRL  L  LE  +I  E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E++EV E F                           
Sbjct: 480 LLEIIAALLYILRSPERLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLINEEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +      +A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 540 VTLSHLGYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 599

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  ++ L+  + I        Y     +++ ++ G       
Sbjct: 600 WLKVYQLPLASRTARGRPIVNILPLSEGERITAILPVREYADDKYIIMATAHGTVKKTAL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID----------- 676
           +        G   + +   +++  V    G D + +  +  K++ F+             
Sbjct: 660 TAYSNPRANGIIAVNLKDGDQLIGVDITNGEDEIMLFSDAGKVVRFNEKVRDSETGQVKL 719

Query: 677 ---------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
                     +  M R   GVR    +D      +     +G   +      Y +  +  
Sbjct: 720 DPETGEEVLALRPMGRTATGVRGIRLEDDQKVVSLIVPKDDGA-ILTVTENGYGKRTDLS 778

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 R   G +  K   R+G  + +
Sbjct: 779 EYPAKSRATKGVVSIKISERNGAVVGA 805


>gi|118594749|ref|ZP_01552096.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181]
 gi|118440527|gb|EAV47154.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181]
          Length = 855

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/789 (30%), Positives = 395/789 (50%), Gaps = 63/789 (7%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             VSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  +F   +KKSAR
Sbjct: 9   IPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNNFNRPYKKSAR 68

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM+
Sbjct: 69  IVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMS 128

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           +++  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+ P HN+ 
Sbjct: 129 KISHEMLADIDKETVDFGPNYDGSEHEPLIMPTRIPNLLINGSSGIAVGMATNFPPHNLT 188

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+    LAL+  PE SI++L+E+I GPDFPT G I+     + + YR GRG   +R +  
Sbjct: 189 EVINGLLALLQKPETSIDELMEFIPGPDFPTSG-IIHGISGVRDGYRTGRGRVVMRGKTH 247

Query: 258 VEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           VE + RG+   I+V E+PYQV K   IEKIAEL+  K+I  + D+RDES +    V+   
Sbjct: 248 VESLERGNREAIIVDELPYQVNKKTFIEKIAELVGDKKIEGISDLRDESDKAGMRVVIEL 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +   P++++ +++  + ++  F +NM  L     P+++ L  IL  +L HRREV+ RR+
Sbjct: 308 KKGEIPEVILNNLYKQTQLQDNFGMNMVALID-GQPRLLNLREILDAFLKHRREVITRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-------------- 422
            + ++    R  IL+GL +A  N+DE+I II++   P                       
Sbjct: 367 VYELKKARERGHILEGLAVALANVDEMIKIIKSAPTPPDAKKELMERSWASDVVSSMLKK 426

Query: 423 -----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  L++ Q   IL LRL+ L  LE+ +I +E   ++    
Sbjct: 427 SSQDLSKPDGLSVLYGLKEDGYRLSDTQAQEILQLRLQRLTGLEQEKIVTEYHAIMVTII 486

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +LN  ++  + I+ E+ E++  +        RR+              + +I  + 
Sbjct: 487 DLLDILNKSERVTSIISEELTEIRSQYGD-----DRRSEIV---TDAYDLSIEDLIAPQD 538

Query: 520 ITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +SN G+         R+ K       A+  KE D ++    A++ D IL  S+ G+
Sbjct: 539 MVVTLSNSGYIKAQVLDDYRAQKRGGRGKQAMGTKEDDFIEQMFVANSHDNILCFSSRGQ 598

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    +        G+ I  L  L   + I        +     + + ++KG     
Sbjct: 599 VYWLKVYEVPQGSRISRGKPIVNLFPLMPGEKINAILAVKDFVDDEYIFMATAKGTVKKT 658

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-G 684
             S+     + G   +K+++ + +       G+  + ++    K + F    +  M R  
Sbjct: 659 PLSDFSNPRKSGIIAIKLANGDYLIGAGVTNGEQDIILISSGGKAVWFDEHDVRSMGRNA 718

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            GVR     D      +        + + +    Y +           RG  G    +  
Sbjct: 719 AGVRGMKLPDTEQVLSLLIASSNEESVLVATENGYGKRTVLSEFRKSGRGTQGVKAIQVS 778

Query: 745 PRSGKFLSS 753
            R+G  +++
Sbjct: 779 DRNGIVVAA 787



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 7/174 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+    GD L  A   +    I+L+S+ GKA      ++ S   +  A    
Sbjct: 665 NPRKSGIIAIKLANGDYLIGAGVTNGEQDIILISSGGKAVWFDEHDVRSMGRNA-AGVRG 723

Query: 594 IDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
           + L   + +++  +  S    +LV +  G       SE   + R   G   ++VS    +
Sbjct: 724 MKLPDTEQVLSLLIASSNEESVLVATENGYGKRTVLSEFRKSGRGTQGVKAIQVSDRNGI 783

Query: 651 KLVVKVTGDH--VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
            +  K+ GDH  + ++     L+   + +I E+ R  +GV L +  DG     I
Sbjct: 784 VVAAKLVGDHDEIMLITTGGVLIRTRVSEIRELGRATQGVTLINLSDGEKLSGI 837


>gi|254500997|ref|ZP_05113148.1| DNA topoisomerase IV, A subunit [Labrenzia alexandrii DFL-11]
 gi|222437068|gb|EEE43747.1| DNA topoisomerase IV, A subunit [Labrenzia alexandrii DFL-11]
          Length = 750

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 437/745 (58%), Positives = 569/745 (76%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     ++ ++L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRR+++AM  + 
Sbjct: 1   MGQEVTPPPSGIEGINLKDALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLK 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD G  FKK AR+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPLI GQGNFGN+DGD+
Sbjct: 61  LDPGQGFKKCARVVGDVIGKYHPHGDQAVYDALVRLAQDFAQRYPLIDGQGNFGNVDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT  A+ +L G+DEDAVD+R+TY+ ED EP+V P  FPNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTDTAKRLLDGLDEDAVDWRETYDGEDKEPIVLPGGFPNLLGNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN  E+C A   LI NP+  +++LLE+I GPDFPTGG++V  + SI E+Y  
Sbjct: 181 GMATSIPPHNAFELCNACQHLIKNPDAEVDELLEHIKGPDFPTGGLLVSDQGSIREAYAT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FRVRARW VEE+GRG W IVVTEIPYQVQKSRLIEKIAEL+IA+++PLL+D+RDES
Sbjct: 241 GRGSFRVRARWEVEELGRGQWAIVVTEIPYQVQKSRLIEKIAELLIARKLPLLDDVRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AED+R+VL P+++++D ++LMES+F L+D+E RF LNMNVLSMG+VP VM +  +L+EWL
Sbjct: 301 AEDIRVVLVPRSKNVDANILMESLFKLTDLENRFSLNMNVLSMGKVPMVMGVKQVLREWL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HR+ VL RRS  R+  I+ R+E+L G LIAYLN+DE+I IIR ED  K  ++  F LT+
Sbjct: 361 DHRKVVLVRRSEHRLGQINHRLEVLAGYLIAYLNLDEVIRIIREEDDAKASLIRTFELTD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE++I+ E D L  EK+++  LL S  +QW +I+ EI E+ ++
Sbjct: 421 VQAEAILNMRLRSLRKLEEFEIRKEHDKLTDEKDQLTKLLGSDARQWTKISKEIGEIAKV 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +   T++G+RRT   E   AD   +QQAMIEKEPITV+IS +GWIR+LK H  DLS+L F
Sbjct: 481 YGPETEIGKRRTDKAEAPEADLVDIQQAMIEKEPITVIISEKGWIRALKGHQADLSSLSF 540

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD LK++ HA TTD+IL+ ST GK +TL A  L  GRGHGE I+L+++++  QD+V+A
Sbjct: 541 KQGDKLKLSFHAETTDKILVFSTGGKFFTLGADRLPGGRGHGEPIRLMVEMDEAQDVVSA 600

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+     LL+ +++   F+V E +++ANTRKGK  L +++  +  L V  TGDHVA++G
Sbjct: 601 FVHKPGRNLLLSNNEARGFVVSEDDVVANTRKGKQVLNLTAPAEAALCVDATGDHVAIIG 660

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRKLL+F + QI +M RG+GVRLQ Y+DG +SD+  FK  +GLTW DS+GRS+ RS  +
Sbjct: 661 ENRKLLVFPLAQIAQMGRGRGVRLQRYRDGNVSDIRVFKGEDGLTWTDSSGRSFTRSLEE 720

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  WLG RG  G L P GFPRS KF
Sbjct: 721 LSEWLGDRGQAGRLPPTGFPRSNKF 745


>gi|255971554|ref|ZP_05422140.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|257418837|ref|ZP_05595831.1| DNA gyrase A gyrA [Enterococcus faecalis T11]
 gi|255962572|gb|EET95048.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|257160665|gb|EEU90625.1| DNA gyrase A gyrA [Enterococcus faecalis T11]
          Length = 813

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  +  V GD  + ++     ++ F++D + +  R   GVRL   +DG 
Sbjct: 741 TANITEKNGP-LAGLTTVNGDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGA 799

Query: 697 ISDVICFKICEG 708
               +     E 
Sbjct: 800 KVVTMAVVEPEE 811


>gi|167623965|ref|YP_001674259.1| DNA gyrase subunit A [Shewanella halifaxensis HAW-EB4]
 gi|167353987|gb|ABZ76600.1| DNA gyrase, A subunit [Shewanella halifaxensis HAW-EB4]
          Length = 908

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/807 (31%), Positives = 391/807 (48%), Gaps = 68/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RYPLI GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +VA  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI++P +SIE+L+EYI GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNINEVISGCLALIEDPALSIEQLMEYIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R+R  +EE   G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRSRAEIEEEN-GRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 300 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 359 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHV 418

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +   ++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 419 KGMLEKAGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 478

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ EV   F                           
Sbjct: 479 LLEIIAALLFILGSPQRLMEVIKEELEEVLANFGDERRTVINANEVDMSLEDLINEEDVV 538

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +      +A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 539 VTLSHLGYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 598

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  L+ L   + I        Y     +++ +S G       
Sbjct: 599 WLKVYQLPLASRTARGRPIVNLLPLAEGERITAILPVREYAEDKYIIMATSHGTVKKTAL 658

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID----------- 676
           +        G   + +   +++  V    G + + +     K++ F+             
Sbjct: 659 TAYSNPRANGIIAVNLKDGDQLIGVDITDGNNDIMLFSNEGKVVRFNEKARSSETGEVKI 718

Query: 677 ---------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
                     +  M R   GVR    +DG     +     EG   +      Y +  +  
Sbjct: 719 DPETGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPKGEGD-ILTVTENGYGKRTDLA 777

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  K   R+G  + +
Sbjct: 778 EYPAKSRGTKGVVSIKVSERNGAVVGA 804


>gi|254252934|ref|ZP_04946252.1| DNA gyrase subunit A [Burkholderia dolosa AUO158]
 gi|124895543|gb|EAY69423.1| DNA gyrase subunit A [Burkholderia dolosa AUO158]
          Length = 867

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/789 (30%), Positives = 378/789 (47%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +++P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NP+ ++++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLSNPDATVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------------------- 412
           + ++    R  +L+GL +A  NIDE IAII+                             
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMTKSWDSSLVREMLTRA 427

Query: 413 ---------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ESENAAAGGRAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 REVMAQIADLLDILARPERITTMIGDELTTVKAEFGDARRSRIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D +L  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWIKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFVFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  ++ K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  + + +    + +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQQVIALLVAGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 788 ERNGKVVAA 796



 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 738 GQQVIALLVAGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|126697572|ref|YP_001086469.1| DNA gyrase subunit A [Clostridium difficile 630]
 gi|255308725|ref|ZP_05352896.1| DNA gyrase subunit A [Clostridium difficile ATCC 43255]
 gi|115249009|emb|CAJ66820.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 808

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/751 (33%), Positives = 412/751 (54%), Gaps = 15/751 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
              +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++
Sbjct: 4   NNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATSIP 
Sbjct: 124 AKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A + LIDNPE S++ L++++ GPDFPT   I+  +ESI E+YR GRG  +VR
Sbjct: 184 HNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAA-IIMGKESIAEAYRTGRGKVKVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R  +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  +   ++
Sbjct: 243 SRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  S ME  F + M  L     P+V+ L  IL  ++ H+ +V+ 
Sbjct: 303 IELKRDANANIVLNNLYKHSQMEDTFSIIMLALVD-GQPRVLNLKQILYHYIKHQEDVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ F +   + R  IL+GL IA  NID +I++IR     +      + +F LTE Q  A
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFKLTEIQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +S   
Sbjct: 422 ILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDER 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               R        R   +  + A+       +        +S K     +SAL  +E D 
Sbjct: 482 RTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDF 541

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY 608
           ++  +   T  R+L  +  G+ + L A  +  G+   +  AI  L+ L+ ++ I T    
Sbjct: 542 VRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI 601

Query: 609 ---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664
              D    LL+ + KG     +  E     + G   + +  ++++  V    G   V +V
Sbjct: 602 DGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLV 661

Query: 665 GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRS 722
            +    + F  + I  M R   GV+  +        V+   +  +G   +  +   + + 
Sbjct: 662 TKEGMSIRFDENDIRYMGRTAMGVKGITLSKED--FVVSMNLCSKGTDVLVVSKNGFGKR 719

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            N        R G G        ++G  + +
Sbjct: 720 TNIEEYRSQIRAGKGIKTYNISEKTGTIVGA 750



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 65/192 (33%), Gaps = 7/192 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++           +   L A+  ++ D L           +LL++ +G +      ++  
Sbjct: 618 IVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRY 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   I L+    +V+  +      +LVVS  G        E  +  R GK   
Sbjct: 678 MGRTAMGV-KGITLSKEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIK 736

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG- 696
             +  EK   +     V   D + ++  +  L+   +++I    R   GV+L    D   
Sbjct: 737 TYNISEKTGTIVGADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVN 796

Query: 697 ISDVICFKICEG 708
           +  +    I E 
Sbjct: 797 VVSIAKINIEEE 808


>gi|255657643|ref|ZP_05403052.1| DNA gyrase subunit A [Clostridium difficile QCD-23m63]
 gi|296880072|ref|ZP_06904041.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP07]
 gi|296428939|gb|EFH14817.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP07]
          Length = 808

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/751 (33%), Positives = 413/751 (54%), Gaps = 15/751 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
              +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++
Sbjct: 4   NNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATSIP 
Sbjct: 124 AKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A + LIDNPE S++ L++++ GPDFPT   I+  +ESI E+YR GRG  +VR
Sbjct: 184 HNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAA-IIMGKESIAEAYRTGRGKVKVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R  +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  +   ++
Sbjct: 243 SRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  S ME  F + M  L     P+V+ L  IL  ++ H+ +V+ 
Sbjct: 303 IELKRDANANIVLNNLYKHSQMEDTFSIIMLALVD-GQPRVLNLKQILYHYIKHQEDVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ F +   + R  IL+GL IA  NID +I++IR     +      + +F+LTE Q  A
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFNLTEIQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +S   
Sbjct: 422 ILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDER 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               R        R   +  + A+       +        +S K     +SAL  +E D 
Sbjct: 482 RTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDF 541

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY 608
           ++  +   T  R+L  +  G+ + L A  +  G+   +  AI  L+ L+ ++ I T    
Sbjct: 542 VRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI 601

Query: 609 ---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664
              D    LL+ + KG     +  E     + G   + +  ++++  V    G   V +V
Sbjct: 602 DGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLV 661

Query: 665 GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRS 722
            +    + F  + I  M R   GV+  +        V+   +  +G   +  +   + + 
Sbjct: 662 TKEGMSIRFDENDIRYMGRTAMGVKGITLSKED--FVVSMNLCSKGTDVLVVSKNGFGKR 719

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            N        R G G        ++G  + +
Sbjct: 720 TNIEEYRSQIRAGKGIKTYNISEKTGTIVGA 750



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 65/192 (33%), Gaps = 7/192 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++           +   L A+  ++ D L           +LL++ +G +      ++  
Sbjct: 618 IVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRY 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   I L+    +V+  +      +LVVS  G        E  +  R GK   
Sbjct: 678 MGRTAMGV-KGITLSKEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIK 736

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG- 696
             +  EK   +     V   D + ++  +  L+   +++I    R   GV+L    D   
Sbjct: 737 TYNISEKTGTIVGADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVN 796

Query: 697 ISDVICFKICEG 708
           +  +    I E 
Sbjct: 797 VVSIAKINIEEE 808


>gi|241662455|ref|YP_002980815.1| DNA gyrase subunit A [Ralstonia pickettii 12D]
 gi|240864482|gb|ACS62143.1| DNA gyrase, A subunit [Ralstonia pickettii 12D]
          Length = 889

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/796 (30%), Positives = 383/796 (48%), Gaps = 63/796 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR +++M E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ V+F   Y+  ++EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NPE ++++L+E I  PDFPT G I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLRNPEATVDELIELIPAPDFPTAG-IIYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVD-GQPRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           F ++    R  IL+GL +A  NIDE IAII+    P                        
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVRA 427

Query: 415 ---------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F                +          
Sbjct: 488 VMAQIADLLDILAKPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLITPQDLV 547

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 548 VTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLY 607

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    +        G  I  +  L+  + I        +D    + + +SKG       
Sbjct: 608 WLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKGTVKKTAL 667

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E     + G   + +   + +       G H V +  +  K + F  + +  M R  +G
Sbjct: 668 TEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG 727

Query: 687 VRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           VR  + ++      +     E           + + +    Y +           RG  G
Sbjct: 728 VRGMNLEENQQVIAMLVAPAETAGEGAQSGAGSVLTATENGYGKRTPISEYTRHGRGTKG 787

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK +++
Sbjct: 788 MIAIQTSERNGKVVAA 803



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 661 TVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP 720

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L  NQ ++   V  +             +L  +  G       SE  
Sbjct: 721 MGRQARGVRGM-NLEENQQVIAMLVAPAETAGEGAQSGAGSVLTATENGYGKRTPISEYT 779

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     + + +   +    D + ++     L+   +D+I EM R  +GV
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGV 839

Query: 688 RLQSYKDG 695
            L S  +G
Sbjct: 840 TLISVGEG 847


>gi|312959698|ref|ZP_07774215.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6]
 gi|311286415|gb|EFQ64979.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6]
          Length = 884

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/795 (32%), Positives = 414/795 (52%), Gaps = 65/795 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE+++++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++ +E   
Sbjct: 422 VAMVERAGADSCRPETLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +LNS  +    I  E+  ++  +        RRT   +   A        
Sbjct: 482 ILNQIGELIRILNSAVRLMEVIREELEVIRAEYGD-----VRRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           MI +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +LL
Sbjct: 534 MIPEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSK 620
            S+ GK Y L    +        G  +  L+ L+ ++ I T    +       + + ++K
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFMATAK 653

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G                G   L++   + +       G+  V +  +  K+  F    + 
Sbjct: 654 GTVKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVR 713

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR     +G     +     EG   + ++ R Y +          KRGG G 
Sbjct: 714 AMGRTARGVRGMRLPEGQKLISMLI-PEEGSQILTASERGYGKRTAISEFPEYKRGGQGV 772

Query: 739 LVPKGFPRSGKFLSS 753
           +      R+G+ + +
Sbjct: 773 IAMVSNDRNGRLVGA 787


>gi|269926182|ref|YP_003322805.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798]
 gi|269789842|gb|ACZ41983.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798]
          Length = 809

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/755 (33%), Positives = 411/755 (54%), Gaps = 28/755 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V +   +   YL YA+S I  RA+PD+RDG KPV RR ++AM ++GL   A ++KSA
Sbjct: 6   VRPVDIDQEMRSSYLDYAMSVIMSRALPDVRDGLKPVQRRTLYAMYQLGLTQSARYRKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGEV+   HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG++DGDSAAA RYTEAR+
Sbjct: 66  GIVGEVLKLYHPHGDSAVYDTLVRMAQDFTLRYPLVDGQGNFGSVDGDSAAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T +AE +L+ +D+D VDF   Y++ + EPVV PS+ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 126 TGLAEELLRDIDKDTVDFVPNYDDSEREPVVLPSRIPNLLINGSSGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +EIC+  + LID+P+ +IE L + + GPDFPTGGII+  RE I+ +Y  G+G   VRA+ 
Sbjct: 186 REICDGLIYLIDHPDATIEDLSKIVQGPDFPTGGIIL-GREGILSAYGTGKGKIIVRAKA 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE+      I+VTE+PYQV K+ LIEKIAEL+  +RIP + DIRDES  +   ++   
Sbjct: 245 HIEELRGNRSAIIVTELPYQVNKAALIEKIAELVKEERIPSISDIRDESDRNGMRIVIEL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P  ++  ++  + M+T F +N   L  G VP+++ L  +++ ++ HR+ V+ RR+
Sbjct: 305 RREAQPLKVLNQLYKFTPMQTTFGVNSLALVDGTVPRMLTLKQMMRHYIEHRQIVIRRRT 364

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILN 433
            + +     R  +L+GL+IA  N+D +I  IRN          ++  F LTE Q  AIL+
Sbjct: 365 EYDLGKARARAHVLEGLMIALSNLDAVINTIRNSRSADAAKTKLMQDFGLTEVQAQAILD 424

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LR L  LE  +I+ EL  + A+  + +S+L S ++    +  +++E+++ +       
Sbjct: 425 MQLRRLAALERQKIEDELKEVRAQIREYESILASPEKVLAIVKSDLQEIRDKYGDE---- 480

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHF 545
            RRT   E   A      + +I    + V +++RG+I+ L   +             +  
Sbjct: 481 -RRTKIVE---ASGDIRDEDLIPNIEVAVSVTDRGYIKRLPPDTYRTQRRGGRGVNGVGV 536

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ--- 600
           K+ D ++  L  +T D +L  +  GK Y + A  +       +   +  LI+L  ++   
Sbjct: 537 KDSDVVEHLLVCNTMDSVLFFTNKGKVYQIKAHEIPDSSRTSKGLPLVNLINLEPHERVT 596

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGD 659
           +++    +     L  ++  G        E  +    G   + +   ++++ V  +   D
Sbjct: 597 EVIAVREFKPDRYLTTITKNGKIKRTSLEEYSSVRSNGLIAMSLEEGDELRDVRLLGDND 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + V+    + + F    +    R   GV      +G     +   +  G   +    + 
Sbjct: 657 DILVLTAKGQSIRFPASDVRPTGRQAIGVTAIRLSEGDEVVAMEV-VQSGAEILLVTKKG 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + +  +        R G G+   K   ++G   ++
Sbjct: 716 FGKRTSIDEFNRQARAGSGARAIKIDEKTGDLATA 750



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 75/215 (34%), Gaps = 12/215 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E        +     + +     I+  G I+              L A+  +EGD L+ 
Sbjct: 589 LEPHERVTEVIAVREFKPDRYLTTITKNGKIKRTSLEEYSSVRSNGLIAMSLEEGDELRD 648

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  D IL+L+  G++   PA ++         +   I L+   ++V   V  S  +
Sbjct: 649 VRLLGDNDDILVLTAKGQSIRFPASDVRPTGRQAIGV-TAIRLSEGDEVVAMEVVQSGAE 707

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE-EKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+ KG        E     R   G   +K+  +   +        D  V +   + +
Sbjct: 708 ILLVTKKGFGKRTSIDEFNRQARAGSGARAIKIDEKTGDLATARMAPEDSEVLIASASGQ 767

Query: 670 LLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICF 703
           ++    + I + S+  +GV L + K       +  
Sbjct: 768 VVRLKTNTISKQSKAARGVSLMTLKPNDSVTSLAI 802


>gi|332993179|gb|AEF03234.1| DNA gyrase, A subunit [Alteromonas sp. SN2]
          Length = 898

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/812 (31%), Positives = 395/812 (48%), Gaps = 71/812 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+ 
Sbjct: 1   MSDN----ANEILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELK 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            DF   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMAKIAHELLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    +ALI +P I+I+ L+ +I GPDFPT  +I   R+ I ++YR 
Sbjct: 177 GMATNIPPHNLTEVINGCIALIKDPSITIDDLMLHIPGPDFPTAAMIS-GRKGIDDAYRT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E    G   I++ EIPYQV K+RLIEKIAEL+  KRI  +  +RDES
Sbjct: 236 GRGKIYMRAKAEIETEDNGKETIIINEIPYQVNKARLIEKIAELVKEKRIEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R+   ++L+  ++  + ++T F +NM  L     P+V  L   L+ ++
Sbjct: 296 DKDGMRIVVEVKRNESAEVLLNHLYANTQLQTVFGINMVALD-NGQPKVFNLKETLEAFI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL IA  NID II +I+    P            
Sbjct: 355 LHRREVVTRRTVFELRKARDRAHILEGLAIALANIDPIIELIKASPGPADAKKALVAQGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGDVSQMLERAGDDAARPDWLMPEFGIRDGQYFLTEQQAQAILDLRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL    ++  +LNS ++    I  E+ +++E F  +        +          
Sbjct: 475 EEYKQLLEVIAELLHILNSPERLMEVIEEELEKIREEFGDARRTEITAASHDIDIEDLIE 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         S +      SA   K  D ++  L A+T D IL  ST
Sbjct: 535 QEDVVVTLSREGYVKYQKLNDYESQRRGGRGKSATKMKNEDFIEKLLVANTHDHILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L   S    G  I  ++ L  N+ I        ++    +L+ ++ G  
Sbjct: 595 RGRLYWLKVYQLPLASRNARGRPIVNILPLEDNERITAILPIKEFEEGKFVLMATANGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID------ 676
              + S        G   + ++  +++  V    G D + +  +  K++ F+        
Sbjct: 655 KKTDLSLYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSET 714

Query: 677 --------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
                          +  M R   GVR    +D      +     +G   + +    + +
Sbjct: 715 GNVKLDPETGEELLALRPMGRTATGVRGIRLQDDQRVVSLIVPRGDGP-ILTATENGFGK 773

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      R   G +  K   R+GK + +
Sbjct: 774 RTPLEDYPAKSRATQGVVSIKVSERNGKVVGA 805


>gi|37514963|dbj|BAC98438.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/789 (30%), Positives = 382/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE ++++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACHHLLANPEATVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L  +LAHRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDTFGMNMVALVD-GQPKLLNLKEMLVCFLAHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE I II+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       +++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSADKYVFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G+H V +  ++ K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  + + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQQVIPMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+G+ +++
Sbjct: 788 ERNGRVVAA 796



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 738 GQQVIPMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|254515159|ref|ZP_05127220.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3]
 gi|219677402|gb|EED33767.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3]
          Length = 871

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/783 (30%), Positives = 393/783 (50%), Gaps = 49/783 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKS
Sbjct: 7   EISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L  +D+D VD+ D Y+  +  PVV P++ PNLL NG++GIAVGMAT+IP HN
Sbjct: 127 MSKIAHALLADLDKDTVDYVDNYDGTEQIPVVLPTRVPNLLVNGSAGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  A LALI++ +I+I+ L+ Y+ GPDFPTG  I+  R  IV++YR GRG   VRA+
Sbjct: 187 LREVVNACLALINDSDITIDDLMRYLPGPDFPTGA-IINGRAGIVQAYRTGRGRIYVRAK 245

Query: 256 WC-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              + +   G   I++ EIPYQ+ K+RLIE+IAEL+  K++  + ++RDES +D   V+ 
Sbjct: 246 AEVITDEKTGRDTIIIHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +    D+++ +++  + ++  F +NM  L     P+V+ L  IL+ +L HRREV+ R
Sbjct: 306 ELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVD-GQPRVLNLKEILEAFLRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ + ++    R  +L+GL IA  NID +I +++    P                     
Sbjct: 365 RTLYLLRKARERGHVLEGLAIALANIDRVIELVKASPSPADARESLLAQSWMPGEVTSML 424

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+  Q  AIL+LRL  L  LE  ++  E  + L E
Sbjct: 425 ERAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKLIE 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L   ++    I  E+ E+   F        R +     +        + +   
Sbjct: 485 IADLMDILQDPERLLAVIREELEEITAEFGDERRTEIRDSQEDLTAEDLITPEDRVVTLS 544

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
                        +  +   +  +AL  K+ D ++  L A+T D +L  S  GK Y +  
Sbjct: 545 HGGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFSNFGKVYWIKV 604

Query: 578 GNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEII 632
             +        G  +  L+ L+  + + +    +       + + ++ G     + +   
Sbjct: 605 YQIPVAGRASRGRPMVNLLQLDEGERVTSILPLEEHTDDRFIFMATANGYVKKTDLASF- 663

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQ 690
           A    G   + +  ++ +       G   V +     K   FS   +  M R  +GVR  
Sbjct: 664 APRSAGLRAIVLGDDDVLVGTAITDGSQDVMLFSSEGKATRFSESAVRPMGRASRGVRGI 723

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  +G     +      G T +  +   Y +           RGG G +      R+G+ 
Sbjct: 724 NLAEGHRMISLLVPDATG-TVLTVSENGYGKRTAVDDFPTKGRGGKGVIAMASSQRNGRL 782

Query: 751 LSS 753
           + +
Sbjct: 783 VGA 785



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH- 536
            I+  +   +     GR      ++   ++ T    + E      +          K+  
Sbjct: 601 WIKVYQIPVAGRASRGRPMVNLLQLDEGERVTSILPLEEHTDDRFIFMATANGYVKKTDL 660

Query: 537 ------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                 S  L A+   + D L        +  ++L S++GKA       +         +
Sbjct: 661 ASFAPRSAGLRAIVLGDDDVLVGTAITDGSQDVMLFSSEGKATRFSESAVRPMGRASRGV 720

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---E 647
           +  I+L     +++  V D+T  +L VS  G        +     R GK  + ++S    
Sbjct: 721 RG-INLAEGHRMISLLVPDATGTVLTVSENGYGKRTAVDDFPTKGRGGKGVIAMASSQRN 779

Query: 648 EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
            ++   ++V +GD + ++     L+    DQ+ ++ R  +GVR+   K+G 
Sbjct: 780 GRLVGALQVFSGDELMLISNQGTLVRTQCDQVSQLGRNTQGVRIIRTKEGE 830


>gi|91784819|ref|YP_560025.1| DNA gyrase subunit A [Burkholderia xenovorans LB400]
 gi|91688773|gb|ABE31973.1| DNA gyrase subunit A [Burkholderia xenovorans LB400]
          Length = 882

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/789 (30%), Positives = 382/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE +I++L+E +  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLKNPEATIDELIEIVPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRALTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L  +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEMLSCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARAWDSSLVREMLSRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENATAGGREAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  +K  F  +             +       +
Sbjct: 488 REVMAQIADLLDILARPERITAIIVEELTSIKAEFGDARRSKIELNATELNTEDLITPQE 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + K       A   KE D +     A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y++    +        G  I  +  L   + I        + +   + + ++ G     
Sbjct: 608 VYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFSADKFVFMGTALGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-G 684
                    RKG   + +   + +       G H V +  ++ K + F  + +  M R  
Sbjct: 668 PLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  + + +    + +    +      RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPIIEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 788 ERNGKVVAA 796



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
               I      D    +L  +  G        E   + R  KG   ++ S    K+    
Sbjct: 738 GQNVIALLVAGDEQQSVLTATENGFGKRTPIIEYTRHGRGTKGMIAIQTSERNGKVVAAT 797

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V  +  + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|87160436|ref|YP_492728.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|282920725|ref|ZP_06328444.1| DNA gyrase, A subunit [Staphylococcus aureus A9765]
 gi|284023043|ref|ZP_06377441.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 132]
 gi|294849834|ref|ZP_06790574.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754]
 gi|93204587|sp|Q2FKQ0|GYRA_STAA3 RecName: Full=DNA gyrase subunit A
 gi|87126410|gb|ABD20924.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|282594133|gb|EFB99121.1| DNA gyrase, A subunit [Staphylococcus aureus A9765]
 gi|294823382|gb|EFG39811.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754]
          Length = 887

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLT 710
           +   
Sbjct: 813 DAED 816



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|226309598|ref|YP_002769492.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599]
 gi|226092546|dbj|BAH40988.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599]
          Length = 844

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/755 (32%), Positives = 401/755 (53%), Gaps = 29/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
               V +   + E +++YA+S I  RA+PD+RDG KPVHRRI++AM +MGL     F+KS
Sbjct: 7   RFPKVDISHEMRESFISYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGLTPDKPFRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+   HPHGD S+Y+++VR+AQ F  RY L+ GQGNFG++DGD AAA RYTE+R
Sbjct: 67  ANVVGEVMANYHPHGDSSIYEAMVRMAQDFNMRYMLVEGQGNFGSVDGDPAAAMRYTESR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
            +++A  +L+ +D++ VDF   Y+    EPVV PS+FPNLL NG SGIAVGMAT+IP HN
Sbjct: 127 FSKLALELLRDIDKETVDFIPNYDGRKEEPVVLPSRFPNLLLNGASGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +A+IDNP+I+I+ L++ I GPDFPT G I+     I  +Y  GRG   +RA+
Sbjct: 187 LTEVVDGVIAMIDNPDITIQDLMKIIKGPDFPTAGEIL-GYSGIRRAYETGRGSIIMRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE G+G   I+VTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES      ++  
Sbjct: 246 TQIEEDGKGKPRIIVTEIPYQVNKARLVEKIAELVREKKIEGITDLRDESDRKGMRIVME 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R + P +++ ++F  + M++ F +NM  L   R P+V+ L  +L  +L H+R ++ RR
Sbjct: 306 LRRDVIPKVVLNNLFKHTQMQSTFGVNMLALVDSR-PRVLNLRDMLYYYLEHQRVIIRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL IA  +IDEII++IR+    +      +  +SL+  Q  AIL
Sbjct: 365 TEYDLKQAEARAHILEGLRIALDHIDEIISLIRSSQTTEEARTGLMENYSLSYEQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I++E   L+ +  ++ ++L    + +  I  E+ E+KE F      
Sbjct: 425 DMRLQRLTGLEREKIENEYQELMVKIAELRAILADEAKIYAIIRDELGEIKEKFGDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   E++  +       +I +E + + +++ G+I+          K     +  L 
Sbjct: 482 --RRT---EITFDENHIEDADLIPEEDVVITLTHDGYIKRLPVSTYRSQKRGGRGVQGLG 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
            K+ D ++     ++ D I+  ++ GK Y L    +       +   I  LI +   + +
Sbjct: 537 TKDDDFVEHLYITNSHDYIMFFTSKGKVYRLKGFEIPDLSRTAKGTPIINLIQIEKGERV 596

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
                   +D    L   + KG              + G   + +  ++++  V    G 
Sbjct: 597 SAVIPVKEFDQEHYLFFATKKGIIKKTTLESYENIRKGGLIAVNLREDDELIGVRLTDGQ 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +       + F+   +  M R   GV+  +  D     +    I      +     
Sbjct: 657 QQIIMGTHKGMSVRFNEGDVRTMGRNATGVKGITLDD-DDDVIDMDVIKPNAEVLIVTAN 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +        +  RGG G        RSG  + 
Sbjct: 716 GYGKRTPVDEYRIQSRGGKGIKTHNVTDRSGPVVG 750



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 66/169 (39%), Gaps = 6/169 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A++ +E D L          +I++ +  G +     G++ +   +   +   I L+ 
Sbjct: 635 GLIAVNLREDDELIGVRLTDGQQQIIMGTHKGMSVRFNEGDVRTMGRNATGV-KGITLDD 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVK 655
           + D++   V     ++L+V++ G        E    +R GK     +  ++   +  +  
Sbjct: 694 DDDVIDMDVIKPNAEVLIVTANGYGKRTPVDEYRIQSRGGKGIKTHNVTDRSGPVVGLKV 753

Query: 656 VT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           V   + + ++  +  ++   +  I  M R  +GV+L    +      + 
Sbjct: 754 VEPEEDLMIITTSGIIIRTEMKGISVMGRYTQGVKLIRLSENEQVGSVA 802


>gi|319405615|emb|CBI79238.1| topoisomerase IV subunit A [Bartonella sp. AR 15-3]
          Length = 749

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/749 (61%), Positives = 591/749 (78%), Gaps = 2/749 (0%)

Query: 6   ISNS--NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+    +  +E+++++ LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  
Sbjct: 1   MSDEMIRSFDKEHIESIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRL 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L+ G  + K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDG
Sbjct: 61  LKLNPGQPYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EPVV P  FPNLLANG+SGI
Sbjct: 121 DNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDKEPVVLPGAFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP HNV E+C+AAL LI NP    E L ++++GPDFPTGGI+VE ++SI +SY
Sbjct: 181 AVGMATSIPPHNVAELCDAALYLIANPHADHEDLNQFVLGPDFPTGGILVEPKKSIEDSY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+R+RW  EE  RGS+ IVVTEIPYQ+QKSRLIEK AEL++A+R+P+LEDI D
Sbjct: 241 RTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDIHD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAED+RIVL PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP ++ L   L++
Sbjct: 301 ESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNLLSLRESLQQ 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL HR+EVL RRS +R+  ID R+EIL+G LIAYLN+DE++ IIR  D+PK  ++ RF L
Sbjct: 361 WLQHRKEVLIRRSDYRLNEIDCRLEILQGYLIAYLNLDEVLQIIRESDEPKKELILRFKL 420

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TENQ ++ILN+RLRSLRKLEE+QI+ E ++L  EKEK+ +LL S  +QW  IA EI  V+
Sbjct: 421 TENQAESILNMRLRSLRKLEEFQIRKEFESLKIEKEKLQNLLASNIKQWKIIAEEITRVR 480

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           +IF   T LG+RRTTF E  R D   + QAMIEKEP+T+VIS +GW+R+LK H  D   L
Sbjct: 481 KIFGPETFLGKRRTTFEEAPRHDVNDIHQAMIEKEPVTIVISEKGWMRALKGHLNDYKTL 540

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FKEGD LK+A  A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D+++  +I+
Sbjct: 541 SFKEGDCLKLAFSAFTTDKIIVISTGGKFFTISANILPGGRGHGEPIRILVDMDNEHNIL 600

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           TAFV+++  K L++SS GN FIV ES+IIANTRKGK  + V S + +KL + V GD++A+
Sbjct: 601 TAFVHNTQRKRLLISSYGNGFIVSESDIIANTRKGKQVMNVKSPDSLKLCIPVEGDYIAI 660

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           VGENRK+LIFSI+QIPEMSRGKGVRLQ YKD  + DV  F + EGL+W D+A RS+NR  
Sbjct: 661 VGENRKMLIFSIEQIPEMSRGKGVRLQRYKDSVVVDVKTFTLSEGLSWQDTAERSFNRRA 720

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           ++L+ W+G R G G LVPKGFP+SGKF  
Sbjct: 721 DELVEWMGTRAGAGRLVPKGFPKSGKFSG 749


>gi|260772916|ref|ZP_05881832.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14]
 gi|260612055|gb|EEX37258.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14]
          Length = 893

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/803 (32%), Positives = 398/803 (49%), Gaps = 62/803 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA I N +I+I++L+EYI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYISNEDITIDELMEYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIA+L+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIETEKNGKETIIVSEIPYQVNKARLIEKIADLVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECRRDAVAEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 NHRREVVTRRTIFELRKARERAHILEGLSLALANIDEIIDLIRKAPTPAEAKMGLVSRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGHVAAMLERAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHRLTGLEHGKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L++ ++    I  E+   ++ F  +        +         A
Sbjct: 475 DEYKALLDEIAELIHILSNTERLMEVIREELEMARDNFGDARRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQVLTDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSI----DQ- 677
                 +       G   + +  ++ +  V    G+  + +  ++ K++ F+     D  
Sbjct: 655 KKTSLDQFSNVRANGLIAVNLRDDDSLIGVEITDGESDIMLFSKSGKVVRFNEKPIVDDE 714

Query: 678 ------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
                 +  M R   GVR      G     +     +G   +      Y +         
Sbjct: 715 GNVKGGVRPMGRTASGVRGMKLVKGDQVVSLIVPKTDGD-ILTVTENGYGKRTQLSEYPA 773

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+GK + +
Sbjct: 774 KSRATQGVVSIKVSERNGKVVGA 796


>gi|330815890|ref|YP_004359595.1| GyrA protein [Burkholderia gladioli BSR3]
 gi|327368283|gb|AEA59639.1| GyrA protein [Burkholderia gladioli BSR3]
          Length = 871

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/789 (30%), Positives = 384/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +SEP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLVDIDKETVDFGPNYDGSESEPLILPARIPNLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NP+ SI++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACHHLLANPQASIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRATTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    ++V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAVIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +LAHRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDTFGMNMVALVD-GQPKLLNLKEMLECFLAHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NID+ I +I+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDDFIELIKAAPTPPIARQELMARSWDSSLVREMLARA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       +++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 EAENAAAGGREAYRPEGLNPAFGMQADGKYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 REVMAQIADLLDILARPERITTIIGEELTAVKSEFGDARRSRIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMGTSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G+H V +  ++ K + F  + +  M R  
Sbjct: 668 PLEAFSRPLKKGIIAVGLDEGDFLIGAAITDGEHDVMLFSDSGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  + + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 788 ERNGKVVAA 796



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDEGDFLIGAAITDGEHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 738 GQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V     + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVEPESEIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|74316966|ref|YP_314706.1| DNA gyrase subunit A [Thiobacillus denitrificans ATCC 25259]
 gi|74056461|gb|AAZ96901.1| DNA gyrase, subunit A [Thiobacillus denitrificans ATCC 25259]
          Length = 849

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/789 (31%), Positives = 397/789 (50%), Gaps = 64/789 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+  A+KKSAR+
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKAYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYPLIDGQGNFGSVDGDNAAAMRYTEVRMAR 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP+V P+K PNLL NG+SGIAVGMAT+IP HN+ +
Sbjct: 130 IAHELLADLDKETVDFGPNYDGSEQEPLVLPTKIPNLLINGSSGIAVGMATNIPPHNLTD 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           IC A  AL+D P   IE L+  +  PDFPT G I+     + + YR GRG   +RA   V
Sbjct: 190 ICNALFALLDAPATDIESLISIVQAPDFPTAG-IIYGLSGVRDGYRTGRGRVVMRATCHV 248

Query: 259 EEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           E++ +  G   I++ E+PYQV K+ L+ +I EL+  K+I  + D+RDES +    V    
Sbjct: 249 EDLDKSGGKQAIIIDELPYQVNKANLLIRIGELVRDKQIDGIADLRDESDKSGMRVYIEL 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + D+++ +++  + M+  F +NM  L     P+++ L  +L  +L HRREV+ RR+
Sbjct: 309 KRGENADVVLNNLYKQTQMQDTFGMNMVALID-GQPRLLNLKEMLDAFLRHRREVVTRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----------------------- 413
            F ++    R  IL+GL +A  N+DEI+ +I++ + P                       
Sbjct: 368 VFDLRKARERGHILEGLAVALANVDEIVELIKSSETPAIAKERLLGRAWKSAMVEEMLAR 427

Query: 414 --------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                           +    + L+E Q   IL ++L+ L  LE  +I +E   ++A+  
Sbjct: 428 IDPEYSRPVNMGPEFGLHADGYHLSEIQAQRILEMQLQRLTNLESDKILAEYKEIMAKIA 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +L +  +    I  E+ +V++ F        RR+T  E ++       + +I+ E 
Sbjct: 488 DLLDILANPARITQIIREELTQVRDQFGD-----GRRSTIVENAQDMS---MEDLIKPEE 539

Query: 520 ITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S+ G+++S                 A   K+ D ++    A+T D IL  S  G+
Sbjct: 540 MVVTLSHGGYMKSQPLDDYRAQKRGGRGKQAAGTKDEDFIEKMFVANTHDYILCFSNRGR 599

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L   N+        G+ I  L+ L   + I        +D    + + ++ G     
Sbjct: 600 LYWLKVYNVPQGGRAARGKPIVNLLPLEDGEKISALLPVKTFDDEHYVFMATANGIVKKT 659

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             SE       G   + +   + +       G   V +  ++ K + F  + +  M R  
Sbjct: 660 PLSEFSRPRTAGIIAVGLDDGDVLCGASITDGRHDVMLFSDSGKAVRFDENDVRPMGRAA 719

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GV       G     +     E    + +    Y +           R   G +  +  
Sbjct: 720 RGVIGMKLAKGAKLISLLVAEDENDFVLTATENGYGKRTPIAEYTRHARATQGMIAIQTS 779

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 780 ERNGKVVAA 788



 Score = 84.1 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 5/193 (2%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +  +       ++         +  +  + A+   +GD L  A        ++L S 
Sbjct: 641 FDDEHYVFMATANGIVKKTPLSEFSRPRTAGIIAVGLDDGDVLCGASITDGRHDVMLFSD 700

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GKA      ++         +  +      + I      D    +L  +  G       
Sbjct: 701 SGKAVRFDENDVRPMGRAARGVIGMKLAKGAKLISLLVAEDENDFVLTATENGYGKRTPI 760

Query: 629 SEIIANTRK--GKTFLKVSS-EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG 684
           +E   + R   G   ++ S    K+     V   D + ++     L+   + +I  MSR 
Sbjct: 761 AEYTRHARATQGMIAIQTSERNGKVVAANLVKADDEIMLITTGGVLIRTRVKEIRAMSRA 820

Query: 685 -KGVRLQSYKDGG 696
            +GV L +   G 
Sbjct: 821 TQGVTLINLDKGE 833


>gi|223983500|ref|ZP_03633686.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM
           12042]
 gi|223964672|gb|EEF68998.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM
           12042]
          Length = 849

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/764 (32%), Positives = 419/764 (54%), Gaps = 32/764 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N     N+K  ++   +   +L Y++S I  RA+PD+RDG KPVHRRI++AM+++G+ 
Sbjct: 2   DENNFNHGNIKTTNISSEMRTSFLDYSMSVIVARALPDVRDGMKPVHRRILYAMNDLGIV 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RYPL+ G GNFG++DGD AA
Sbjct: 62  ADKPHKKSARIVGEVIGKYHPHGDTAVYETMVRMAQDFSYRYPLVDGHGNFGSVDGDGAA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM++++  +L+ +++D VD+ D Y+ E+ EPVV P +FPNLL NGT+GIAVGM
Sbjct: 122 AMRYTEARMSKISMELLRDINKDTVDWMDNYDGEEHEPVVLPCRFPNLLVNGTTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           AT+IP HN+ E  +A  A++DNP+I++ + + +YI GPDFPTGG I+  R  I ++Y  G
Sbjct: 182 ATNIPPHNLGETIDAVFAVMDNPDITVMELMEDYISGPDFPTGGYIL-GRAGIKQAYETG 240

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +R++  VE++  G   I+VTEIPY V K+ L+EKIA L+  K I  + D+RDES 
Sbjct: 241 RGSIMIRSKVKVEDMPNGKKQIIVTEIPYVVNKAALVEKIASLVREKIIEGITDLRDESN 300

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +   ++    + +  D+++  ++ ++ ++T F +NM VL     PQ + L  +LK +L 
Sbjct: 301 MEGIRIVIELRKDVQSDVILNQLYRMTSLQTSFGVNMIVLVD-NAPQQLGLKDVLKCYLD 359

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           H+ +V  RR+ F ++  + R  IL+GL IA  +ID II++IR+          ++  F L
Sbjct: 360 HQIDVTVRRTRFELKKAEDRAHILEGLKIALDHIDAIISLIRSSKDTSIAMNGLMENFGL 419

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL+++ R L  LE  +I+ E D+L+A+   +  +LN+  +    I  E+ E+K
Sbjct: 420 SEIQAKAILDMQFRRLTGLERQKIEEEYDSLMAQITDLKDILNNHSRVLEIIRSELTEIK 479

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538
           E ++      +RR+   +   A+     + +I +E + + ++  G+++ +   +      
Sbjct: 480 EKYND-----KRRSEIID---AEIDMQDEDLIPQEDVVITMTVNGYVKRIPVDTYRLQNR 531

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLL 593
               +  +   E D +   L   T D +L+ +  GK Y +    +       +   I  L
Sbjct: 532 GGKGIKGMSMHEDDIVDQFLTMMTHDYLLMFTNQGKVYRIKGYQVPLASRTSKGIPIVNL 591

Query: 594 IDLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++L+ ++ ++     +        L  V+++G    V   E     + GK  + +   ++
Sbjct: 592 LNLDKDEKVLAMVPVERENSPAKFLFFVTAQGIVKRVPIEEFENIRQSGKIAINLREGDE 651

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +      TG   + +   N + + F+   +  M R   GV+  +     +  +      E
Sbjct: 652 LISAKPTTGSSQILIAAANGQAIRFNETDVRPMGRTATGVKGFNVNGSRVIGMTT--DFE 709

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           G   +    + Y +        +  RGG G    +   ++G  +
Sbjct: 710 GQYILSVTEKGYGKKSKLEDYRMTNRGGKGVKTIQVTDKNGPLV 753



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVT 657
            ++          +L V+ KG     +  +     R GK    +        +  +  V 
Sbjct: 700 RVIGMTTDFEGQYILSVTEKGYGKKSKLEDYRMTNRGGKGVKTIQVTDKNGPLVFLRAVN 759

Query: 658 GDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS--DVICFKICEGLTWID 713
           GD   ++      ++  S++++   SR  +GV+L S +D        I +K  +      
Sbjct: 760 GDEDCLIMTNEGIVIRISLEKVSVYSRNTQGVKLISVEDNQTVSTVAIVYKSEDDEETEG 819

Query: 714 SAGRSYNRSENDLL 727
                      D  
Sbjct: 820 DNENGELNQTTDQE 833


>gi|239500994|ref|ZP_04660304.1| DNA gyrase, A subunit [Acinetobacter baumannii AB900]
 gi|260556508|ref|ZP_05828726.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606]
 gi|193078102|gb|ABO13043.2| DNA gyrase [Acinetobacter baumannii ATCC 17978]
 gi|260409767|gb|EEX03067.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606]
          Length = 904

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/827 (30%), Positives = 409/827 (49%), Gaps = 95/827 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  DNP ISIE L+EYI GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++  
Sbjct: 240 IRGKYHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F+ + +E  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVVVNNLFLNTQLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ F ++    R  IL+GL +A  NIDEII  I+    P                 
Sbjct: 359 VVTRRTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGV 418

Query: 420 -------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV AIL LRL  L  LE+ ++ 
Sbjct: 419 VALLEKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN        I  E+ +V + +  +     RRT   E   +   
Sbjct: 479 AEYTEILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDA-----RRTEIVE---SRVD 530

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+         ++ +      SA   K+ D ++  + A   
Sbjct: 531 FCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             +L  +  GK Y L    +       +   I  L+ L+  + +        +     + 
Sbjct: 591 ATVLCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPENHYVF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + ++ G    VE  +       G   ++++ E+ +  V    G+  + +     K + F+
Sbjct: 651 MATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFA 710

Query: 675 IDQIPEMSR-GKGVRLQS-------YKDGGISD--------------------VICFKIC 706
              +  M R  KGVR            +                         V    + 
Sbjct: 711 ETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSADSSLVSRIVSLVVVP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 771 ETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT 657
            IV+  V   T ++L  S+ G       ++     R GK  + + + E   ++   V + 
Sbjct: 762 RIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSID 821

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICF 703
               + ++ +   L+     ++    R  +GVRL    ++  +  V+  
Sbjct: 822 ETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870


>gi|163803514|ref|ZP_02197384.1| DNA gyrase, subunit A [Vibrio sp. AND4]
 gi|159172690|gb|EDP57541.1| DNA gyrase, subunit A [Vibrio sp. AND4]
          Length = 907

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/817 (31%), Positives = 394/817 (48%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLVEVIDGCLAFINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDE+I +I+N   P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKIGLVSRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 DLGNVASMLERAGTDAARPEWLEEQYGIRDGQYYLTETQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++++           +         A
Sbjct: 475 DEYKTLLEEIAELMHILASTERLMEVIREELETVRDVYGDERRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L        G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPHATRTARGKPIVNILPLEDGERITAILPVDEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                ++       G   + +  ++ +  V    GD  + +  +  K++ F   +     
Sbjct: 655 KKTPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKAGKVVRFKEAEEIPVL 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     +      +     EG   +    
Sbjct: 715 DEQGKPVLDENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLIVPSNEGD-ILTVTQ 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +           RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTELSEYPTKGRGTQGVVSIKVSERNGPVVGA 810


>gi|315151296|gb|EFT95312.1| DNA gyrase, A subunit [Enterococcus faecalis TX0012]
          Length = 828

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKKLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  +  V GD  + ++     ++ F++D + +  R   GVRL   +DG 
Sbjct: 741 TANITEKNGP-LAGLTTVNGDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGA 799

Query: 697 ISDVIC 702
               + 
Sbjct: 800 KVVTMA 805


>gi|148266453|ref|YP_001245396.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH9]
 gi|150392486|ref|YP_001315161.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1]
 gi|253316844|ref|ZP_04840057.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|257793544|ref|ZP_05642523.1| DNA gyrase, A subunit [Staphylococcus aureus A9781]
 gi|258411150|ref|ZP_05681429.1| DNA gyrase subunit A [Staphylococcus aureus A9763]
 gi|258420946|ref|ZP_05683880.1| DNA gyrase, A subunit [Staphylococcus aureus A9719]
 gi|258446225|ref|ZP_05694385.1| DNA gyrase, A subunit [Staphylococcus aureus A6300]
 gi|258449116|ref|ZP_05697222.1| DNA gyrase, A subunit [Staphylococcus aureus A6224]
 gi|258454406|ref|ZP_05702374.1| DNA gyrase, A subunit [Staphylococcus aureus A5937]
 gi|282927756|ref|ZP_06335370.1| DNA gyrase, A subunit [Staphylococcus aureus A10102]
 gi|297245905|ref|ZP_06929767.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796]
 gi|147739522|gb|ABQ47820.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus JH9]
 gi|149944938|gb|ABR50874.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1]
 gi|257787516|gb|EEV25856.1| DNA gyrase, A subunit [Staphylococcus aureus A9781]
 gi|257840035|gb|EEV64500.1| DNA gyrase subunit A [Staphylococcus aureus A9763]
 gi|257843136|gb|EEV67551.1| DNA gyrase, A subunit [Staphylococcus aureus A9719]
 gi|257855051|gb|EEV77994.1| DNA gyrase, A subunit [Staphylococcus aureus A6300]
 gi|257857549|gb|EEV80444.1| DNA gyrase, A subunit [Staphylococcus aureus A6224]
 gi|257863500|gb|EEV86260.1| DNA gyrase, A subunit [Staphylococcus aureus A5937]
 gi|282590516|gb|EFB95594.1| DNA gyrase, A subunit [Staphylococcus aureus A10102]
 gi|285815733|gb|ADC36220.1| DNA gyrase subunit A [Staphylococcus aureus 04-02981]
 gi|297177270|gb|EFH36523.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796]
 gi|312828569|emb|CBX33411.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129549|gb|EFT85541.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CGS03]
 gi|329725940|gb|EGG62419.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21172]
          Length = 889

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLT 710
           +   
Sbjct: 813 DAED 816



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|325567636|ref|ZP_08144303.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           casseliflavus ATCC 12755]
 gi|325159069|gb|EGC71215.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           casseliflavus ATCC 12755]
          Length = 841

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/759 (31%), Positives = 395/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      ++N+  V+L   + E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---AKQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D VDF+  Y++ + EP V P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L++NPE++  +L+E + GPDFPTGG IV  +  I  +Y  
Sbjct: 178 GMATNIPPHNLNEVIAAIDLLMENPEVTTSELMEVLPGPDFPTGG-IVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR +  V E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRGKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ +++ F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVILNNLYKMTALQSSFGFNMLAIEK-GVPKILSLKRILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--- 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIA+IR  +       S      
Sbjct: 356 EHQQEVVTRRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNSMMERFK 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL     +  +L + ++    I  E++E+
Sbjct: 416 LSDRQAQAILDMRLRRLTGLERDKIENEYQGLLEFIADLTDILANPQRVLEIIQTELQEL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +    +   R+ +     + 
Sbjct: 476 GQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++ +
Sbjct: 536 GMGIHDEDFVKTLISCSTHDTLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLGIDSS 595

Query: 600 QDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I               L   +  G       +        G   + +   +++  V++
Sbjct: 596 ERIEAIISASGGPQEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDELVNVIE 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+ V ++   +   + F    + +M R   GVR    +DG    V    I E    + 
Sbjct: 656 THGEDVVIIGTHDGYSVTFKEALVRDMGRTAAGVRGIRLRDGDYV-VGAAVITEDSEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKGSEYPIKGRGGKGIKTANITAKNGPLAG 753



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 6/169 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A+  +E D L   +  H  D +++ + DG + T     +        A    I L  
Sbjct: 638 GLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFKEALVRDMGRTA-AGVRGIRLRD 696

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVV 654
              +V A V     ++LV++  G     + SE     R GK      +   +     L  
Sbjct: 697 GDYVVGAAVITEDSEVLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKNGPLAGLTT 756

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
               + + V+     L+ F++  + +  R   GVRL   ++      + 
Sbjct: 757 VSGEEDIMVITNKGVLIRFNVATVSQTGRATLGVRLMKMENNAKVVTMA 805


>gi|21518737|gb|AAM60780.1|AF516183_1 topoisomerase II subunit A [Corynebacterium urealyticum]
          Length = 887

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 403/762 (52%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLDDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L            +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYERPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLT 710
           +   
Sbjct: 813 DAED 816



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|311032262|ref|ZP_07710352.1| DNA gyrase subunit A [Bacillus sp. m3-13]
          Length = 830

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/756 (32%), Positives = 410/756 (54%), Gaps = 28/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            +VK +++   ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 5   SSVKEINISQEMKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTADKAYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VYD++VR+AQ F  RY LI G GNFG++DGD+AAA RYTEA
Sbjct: 65  SARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNFRYMLIDGHGNFGSVDGDAAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG SGIAVGMAT+IP H
Sbjct: 125 RMSKISMEILRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +  LA+  +P+I+I +L+E I GPDFPT G I+  R  I  +Y  GRG   VRA
Sbjct: 185 QLGEIIDGVLAVSKDPDITIPELMEIIPGPDFPTAGQIL-GRSGIRRAYETGRGSITVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V E+PYQV K++LIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 244 KVEIETKPNGREVILVHELPYQVNKAKLIEKIADLVRDKKIEGISDLRDESDRNGMRIVM 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + ++L+ +++  + ++T F +N+  L     P+V+ L   L  +L H++ V+ R
Sbjct: 304 EVKKDANANVLLNNLYKQTSLQTSFGINLLALV-NGEPKVLNLKQCLYYYLEHQKVVIKR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R++F ++  + R  IL+GL IA  ++D +I +IR+       +  +++ FSL+E Q  AI
Sbjct: 363 RTAFELRKAEARAHILEGLRIALDHLDAVITLIRSSQTADIAREGLMTEFSLSEKQAQAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ EVKE F+    
Sbjct: 423 LDMRLQRLTGLEREKIEEEYQGLMQLIAELKAILADEEKVLEIIREELTEVKERFND--- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT    +    +    + +I ++ + + +++ G+I+          +     +  +
Sbjct: 480 --TRRTEI--MVGGFENIEDEDLIPRQNVVITLTHNGYIKRLPLSTYRSQRRGGRGIQGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
              E D ++  L   T D +L  +  GK Y      +       +   I  L+++   + 
Sbjct: 536 GTNENDFVEHLLTTSTHDTLLFFTNKGKVYRAKGYEIPEFSRTAKGIPIINLLEVEKGEW 595

Query: 602 IVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +      +       L   +  G +     S+     + G   L +   +++  V    G
Sbjct: 596 VNAIIPVEDFVDDWYLFFTTKHGISKRSPLSQFANIRKGGLIALGLRESDELISVKLTDG 655

Query: 659 DHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
               ++  +   L+ F    +  M R   GV+  S  +      +   + EGL  +    
Sbjct: 656 TKEMIIGTKKGMLIRFHETDVRSMGRTATGVKGISISENDEVVGMEL-LDEGLDVLVVTK 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +        +  RGG G        R+G+ +S
Sbjct: 715 NGYGKRTPAEEYRVQSRGGKGIKTCNITDRNGELVS 750



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 57/152 (37%), Gaps = 6/152 (3%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +++ +  G        ++ S       +   I ++ N ++V   + D    +LVV+  G 
Sbjct: 659 MIIGTKKGMLIRFHETDVRSMGRTATGV-KGISISENDEVVGMELLDEGLDVLVVTKNGY 717

Query: 623 AFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                  E    +R GK      +   + E + +    T + + ++  +  L+  S+D I
Sbjct: 718 GKRTPAEEYRVQSRGGKGIKTCNITDRNGELVSVKTVTTEEDLMLITASGVLIRMSVDGI 777

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            +M R  +GV+L    +      +     E  
Sbjct: 778 SQMGRNTQGVKLIRLAENEFVTTVARVDKEEE 809


>gi|294140839|ref|YP_003556817.1| DNA gyrase subunit A [Shewanella violacea DSS12]
 gi|293327308|dbj|BAJ02039.1| DNA gyrase, A subunit [Shewanella violacea DSS12]
          Length = 905

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/815 (32%), Positives = 406/815 (49%), Gaps = 83/815 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RYPLI GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDFVPNYDGTEFIPAVMPTRIPTLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI+ P +SIE+L+EYI GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNMTEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R++  V+    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 IMRSKAEVQVEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +++ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMIECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARDRAHILESLAIALANIDPIIAMIKASPTPAEAKVKLVDQGWELGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +    + LT+ Q  AIL+LRL  L  LE  +I +E + 
Sbjct: 420 QAMLEKAGDDAARPEWLEPEYGIRDGLYYLTQPQAQAILDLRLHKLTGLEHEKILAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L+     +  +L S ++    I  E+ E+ E F        RRT              + 
Sbjct: 480 LIDIIAALLYILRSPERLLEVIKEELNEILENFGDE-----RRTVINANEVDMSL---ED 531

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+         ++ +      SA   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKSAAKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S +  G  I  L+ L+  + I        Y     +++ +S 
Sbjct: 592 FSDFGKLYWLKVYQLPLASRQARGRPIVNLLPLSEGEHITAILPVREYADDKYIIMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI---- 675
           G                G   + +   +++  V    G + + +  +  K++ F+     
Sbjct: 652 GTVKKTALKAYSNPRANGIIAVNLKDGDELIGVDITDGKNDIMLFSDAGKVVRFNEMVRD 711

Query: 676 DQ----------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            +                +  M R   GVR    +DG    V      E    +      
Sbjct: 712 SETGLVKLDPETNEELVALRPMGRTATGVRGIRLEDGQKV-VSLIVPKENGAILTVTENG 770

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +  +        R   G +  K   R+G  + +
Sbjct: 771 YGKRTSLEEYPAKSRATKGVVSIKVSERNGAVVGA 805


>gi|293400050|ref|ZP_06644196.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306450|gb|EFE47693.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 844

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/761 (34%), Positives = 417/761 (54%), Gaps = 31/761 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L ++ +K V +   + + +L Y++S I +RA+PD+RDG KPVHRRI+HAM+E+G+    
Sbjct: 2   DLNKDKLKEVDISKEMRKSFLDYSMSVIVDRALPDVRDGLKPVHRRILHAMNELGIVASK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  PFKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +L+ ++++ VDF   Y+ E++EP V P++FPNL+ NG  GIAVGMAT+
Sbjct: 122 YTEARMSKIAMELLRDINKNTVDFGPNYDGEETEPKVMPARFPNLIVNGAVGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ E  +A  A++D+P+I++ + +  YI GPDFPTGGII+  R  I ++Y  GRG 
Sbjct: 182 IPPHNLTETIDATFAVMDDPDITVMELMDNYIKGPDFPTGGIIL-GRSGIRQAYETGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
              R+++ VEE+G G   IVVTEIPYQV K+ LI KIA+L+  K++  +  + DES  D 
Sbjct: 241 IITRSKYHVEEMGNGKNRIVVTEIPYQVNKANLISKIADLVREKQVDGITYLNDESNRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    + +  +++M  +F L+ ++T F +NM  L     P+ M +  +L+ ++ H+ 
Sbjct: 301 IRIVIELRKDVQVEVVMNQLFRLTSLQTSFGVNMLALV-NGAPKQMGIKEMLQHYVDHQI 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
           +V+ RR+ F ++  + R  IL+GL IA  +IDEII +IR            + RF LTE 
Sbjct: 360 DVVVRRTQFDLKKAEDRAHILEGLRIALDHIDEIIRLIRESQNDAEARSGLMERFKLTEI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL +RLR L  LE  +I++E   LL     +  +L +  +    I  E+ EVK  F
Sbjct: 420 QANAILEMRLRRLTGLERDKIENEYQELLKTIADLKDILANHSRVIQIIKDELTEVKNRF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT   E   AD +   + +I  E + + ++  G+I+ +   +         
Sbjct: 480 GDP-----RRTEISE---ADYSMEDEDLIPVEDVVITMTTNGYIKRMPIDTYRTQNRGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  +   E D +++     T D ++L +  GK Y +    + S     +   +  L++L
Sbjct: 532 GVKGMSVNEDDIVELLTTMSTHDYLMLFTNLGKVYRMKGYKIPSAGRTAKGLPVVNLLNL 591

Query: 597 NHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  + +      +       LL V+  G       SE  +  + GK  + +  ++++  V
Sbjct: 592 DKEEKVRALVPVNPESESEYLLFVTQNGLVKRTPMSEFDSIRQNGKIAITLRDDDELMGV 651

Query: 654 VKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            + TGD  + + G N K + F  D I  M R   GV+  +    G   V      +G   
Sbjct: 652 KETTGDDEIIIAGSNGKAVRFHEDGIRAMGRTASGVKGFNV--DGSVVVGVATSRDGTHL 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +   Y +        L  RG  G        ++G  +S
Sbjct: 710 LAVSENGYGKRTAIEEYRLTTRGAKGVKTINITQKTGDLVS 750



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 7/114 (6%)

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVT 657
           +V          LL VS  G        E    TR  K      +   + + +  V  V 
Sbjct: 697 VVGVATSRDGTHLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINITQKTGD-LVSVRAVN 755

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           GD  V ++     ++  +++ I   SR  +GV+L +  +      I     E  
Sbjct: 756 GDEDVMIITNTGIIIRIAVENIGIYSRNTQGVKLINVGEDESVAKIAIVDKEEE 809



 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 36/103 (34%), Gaps = 2/103 (1%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L +S +G                 + ++ +       D+V+    +    ++++++ G
Sbjct: 708 HLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINITQKTGDLVSVRAVNGDEDVMIITNTG 767

Query: 622 NAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +    I   +   +G   + V  +E +  +  V  +  A
Sbjct: 768 IIIRIAVENIGIYSRNTQGVKLINVGEDESVAKIAIVDKEEEA 810


>gi|209548711|ref|YP_002280628.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534467|gb|ACI54402.1| DNA topoisomerase IV, A subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 751

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/739 (64%), Positives = 613/739 (82%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ ++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+
Sbjct: 13  DDYIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE
Sbjct: 73  KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++MT V+EL+L+G+D+DAVDFRDTY+E +SEP V P  FPNLLANG+SGIAVGMATSIPS
Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPTVLPGAFPNLLANGSSGIAVGMATSIPS 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVR
Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+R+VL
Sbjct: 253 AKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRVVL 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL 
Sbjct: 313 VPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVLKEWLDHRREVLQ 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS FR+ AIDRR+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R+ LT+ QV+AILN
Sbjct: 373 RRSRFRLAAIDRRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARWDLTDIQVEAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LRKLEE++I+ E D L  EK +I++LL S  +QW  +A EI EVK+ F+K+T++G
Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVG 492

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRT F +   AD+  +QQAMIEKEPITVVIS +GWIR+LK H  D + L FKEGD LKI
Sbjct: 493 RRRTQFADAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKI 552

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q ++TAFV+D + K
Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPSRK 612

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L+VS+ GN F+V E+E++ANTRKGK  + V+  E+ +L+V V+GDHVAVVGENRKLL+F
Sbjct: 613 QLIVSTAGNGFVVPEAELVANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVF 672

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + Q+PEMSRGKGVRLQ YKDGGISDV CF I  GL W DSAGR++ +++++L  WL  R
Sbjct: 673 PLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISGGLVWEDSAGRTFTKNKDELAEWLADR 732

Query: 734 GGVGSLVPKGFPRSGKFLS 752
              G  VPKGFPRSGKF  
Sbjct: 733 ATAGRTVPKGFPRSGKFAG 751


>gi|49482259|ref|YP_039483.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|221141521|ref|ZP_03566014.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|59797754|sp|Q6GKT9|GYRA_STAAR RecName: Full=DNA gyrase subunit A
 gi|49240388|emb|CAG39034.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|269939532|emb|CBI47890.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TW20]
 gi|302749917|gb|ADL64094.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 886

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 7/116 (6%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             + +      + + +V     ++   +  I +  R  +GVRL    D      + 
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 808



 Score = 40.9 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKV 810


>gi|116689063|ref|YP_834686.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424]
 gi|116647152|gb|ABK07793.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424]
          Length = 867

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/789 (31%), Positives = 378/789 (47%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE +I++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLGNPEATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ESENAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 RDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFIFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  +  K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  T + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 788 ERNGKVVAA 796



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 738 GQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + ++ EM R  +GV L S  +G
Sbjct: 798 LVDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEG 840


>gi|187927867|ref|YP_001898354.1| DNA gyrase subunit A [Ralstonia pickettii 12J]
 gi|187724757|gb|ACD25922.1| DNA gyrase, A subunit [Ralstonia pickettii 12J]
          Length = 889

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/796 (30%), Positives = 383/796 (48%), Gaps = 63/796 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR +++M E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ V+F   Y+  ++EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NPE ++++L+E I  PDFPT G I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLRNPEATVDELIELIPAPDFPTAG-IIYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVD-GQPRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           F ++    R  IL+GL +A  NIDE IAII+    P                        
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVRA 427

Query: 415 ---------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F                +          
Sbjct: 488 VMAQIADLLDILARPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLITPQDLV 547

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 548 VTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLY 607

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    +        G  I  +  L+  + I        +D    + + +SKG       
Sbjct: 608 WLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKGTVKKTAL 667

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E     + G   + +   + +       G H V +  +  K + F  + +  M R  +G
Sbjct: 668 TEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG 727

Query: 687 VRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           VR  + ++      +     E           + + +    Y +           RG  G
Sbjct: 728 VRGMNLEETQQVIAMLVAPAETEGEGAQSVAGSVLTATENGYGKRTPISEYTRHGRGTKG 787

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK +++
Sbjct: 788 MIAIQTSERNGKVVAA 803



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 661 TVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP 720

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L   Q ++   V  +             +L  +  G       SE  
Sbjct: 721 MGRQARGVRGM-NLEETQQVIAMLVAPAETEGEGAQSVAGSVLTATENGYGKRTPISEYT 779

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     + + +   +    D + ++     L+   +D+I EM R  +GV
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGV 839

Query: 688 RLQSYKDG 695
            L S  +G
Sbjct: 840 TLISVGEG 847


>gi|229515631|ref|ZP_04405090.1| DNA gyrase subunit A [Vibrio cholerae TMA 21]
 gi|229347400|gb|EEO12360.1| DNA gyrase subunit A [Vibrio cholerae TMA 21]
          Length = 894

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/817 (32%), Positives = 400/817 (48%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E   +  +L S ++    I  E+  ++  FS +        T         A
Sbjct: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   L +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVV 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     EG   +    
Sbjct: 715 DENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +  +        RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810


>gi|255094678|ref|ZP_05324156.1| DNA gyrase subunit A [Clostridium difficile CIP 107932]
 gi|255316432|ref|ZP_05358015.1| DNA gyrase subunit A [Clostridium difficile QCD-76w55]
 gi|255519092|ref|ZP_05386768.1| DNA gyrase subunit A [Clostridium difficile QCD-97b34]
 gi|260681775|ref|YP_003213060.1| DNA gyrase subunit A [Clostridium difficile CD196]
 gi|260207938|emb|CBA60051.1| DNA gyrase subunit A [Clostridium difficile CD196]
          Length = 808

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/751 (33%), Positives = 412/751 (54%), Gaps = 15/751 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
              +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++
Sbjct: 4   NNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATSIP 
Sbjct: 124 AKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A + LIDNPE S++ L++++ GPDFPT   I+  +ESI E+YR GRG  +VR
Sbjct: 184 HNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAA-IIMGKESIAEAYRTGRGKVKVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R  +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  +   ++
Sbjct: 243 SRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  S ME  F + M  L     P+V+ L  IL  ++ H+ +V+ 
Sbjct: 303 IELKRDANANIVLNNLYKHSQMEDTFSIIMLALVD-GQPRVLNLKQILYHYIKHQEDVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ F +   + R  IL+GL IA  NID +I++IR     +      + +F LTE Q  A
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEKFKLTEIQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +S   
Sbjct: 422 ILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKNEITIIKENYSDER 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               R        R   +  + A+       +        +S K     +SAL  +E D 
Sbjct: 482 RTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDF 541

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY 608
           ++  +   T  R+L  +  G+ + L A  +  G+   +  AI  L+ L+ ++ I T    
Sbjct: 542 VRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI 601

Query: 609 ---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664
              D    LL+ + KG     +  E     + G   + +  ++++  V    G   V +V
Sbjct: 602 DGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLV 661

Query: 665 GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRS 722
            +    + F  + I  M R   GV+  +        V+   +  +G   +  +   + + 
Sbjct: 662 TKEGMSIRFDENDIRYMGRTAMGVKGITLSKED--FVVSMNLCSKGTDVLVVSKNGFGKR 719

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            N        R G G        ++G  + +
Sbjct: 720 TNIEEYRSQIRAGKGIKTYNISEKTGTIVGA 750



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 65/192 (33%), Gaps = 7/192 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++           +   L A+  ++ D L           +LL++ +G +      ++  
Sbjct: 618 IVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRY 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   I L+    +V+  +      +LVVS  G        E  +  R GK   
Sbjct: 678 MGRTAMGV-KGITLSKEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIK 736

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG- 696
             +  EK   +     V   D + ++  +  L+   +++I    R   GV+L    D   
Sbjct: 737 TYNISEKTGTIVGADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVN 796

Query: 697 ISDVICFKICEG 708
           +  +    I E 
Sbjct: 797 VVSIAKINIEEE 808


>gi|332685541|ref|YP_004455315.1| DNA gyrase subunit A [Melissococcus plutonius ATCC 35311]
 gi|332369550|dbj|BAK20506.1| DNA gyrase subunit A [Melissococcus plutonius ATCC 35311]
          Length = 815

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/755 (31%), Positives = 394/755 (52%), Gaps = 15/755 (1%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  + EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+   
Sbjct: 2   DEEMRENIQDVNLTGEMKESFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY LI G GNFG++DGD AAA 
Sbjct: 62  KPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLIDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D VD+   Y++ + EP V P++FPNLL NGT+GIAVGMAT
Sbjct: 122 RYTEARMSKIALEMLRDINKDTVDYHGNYDDTEREPDVLPARFPNLLVNGTTGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ EA   L+D PE++  +L+E + GPDFPTGG +V  +  I  +Y  G+G 
Sbjct: 182 NIPPHNLAEVVEAIDLLMDKPEVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYETGKGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA+  + E+  G   I+VTE+PY V K+RLIE+I+EL   KRI  + D+RDES+ + 
Sbjct: 241 ITVRAKVELTELPNGKERILVTELPYMVNKARLIERISELHRDKRIEGITDLRDESSREG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R +   +++ +++ L+ ++T F  NM  +    VP+++ L  IL+ ++ H++
Sbjct: 301 MRIIIDVRRDVSASVVLNNLYKLTALQTSFGFNMLAIEK-GVPKILSLKQILENYVEHQK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
            V+ RR+ F  +    R  IL+GL IA  +IDEIIA IR          +   RF L++ 
Sbjct: 360 VVIKRRTIFDKKKAQSRAHILEGLRIALDHIDEIIATIRQSQSDDEAKSALIGRFELSDR 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E   LL     ++ +L S ++    I  E+ ++++ F
Sbjct: 420 QAQAILDMRLRRLTGLERDKIEQEYQELLKLISDLEDILASPERIVEIIKKELADIRDRF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHF 545
           S              +   D    ++ ++       +        R+ +     +  +  
Sbjct: 480 SDKRRTELLIGEVLSLEDEDLIEEEKMVVTLTNNGYIKRMANSEFRAQRRGGRGVQGMGV 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
              D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ N+ + 
Sbjct: 540 HADDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEVPEYGRTAKGIPIINLLGIDSNETVQ 599

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           T        +    L   +  G       +        G   + +  ++++  V+  +G+
Sbjct: 600 TIISVTGQAEEGHYLFFTTKNGTVKRTAVTAFSNIRSNGLIAIGLKEDDELVNVILTSGE 659

Query: 660 H-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +         F    + +M R   GVR    ++          + E    +     
Sbjct: 660 QNIIIGTHTGYSTTFKETAVRDMGRTASGVRGIRLRENDYVVGASL-LDENTEVLVITEN 718

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +    +   +  RGG G        ++G    
Sbjct: 719 GYGKRTKAIEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 12/222 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                            E+       +  G ++           S  L A+  KE D L 
Sbjct: 592 IDSNETVQTIISVTGQAEEGHYLFFTTKNGTVKRTAVTAFSNIRSNGLIAIGLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             +       I++ +  G + T     +        +    I L  N  +V A + D   
Sbjct: 652 NVILTSGEQNIIIGTHTGYSTTFKETAVRDMGRTA-SGVRGIRLRENDYVVGASLLDENT 710

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++  G     +  E     R GK      +   +     L      + + ++    
Sbjct: 711 EVLVITENGYGKRTKAIEYPVKGRGGKGIKTANITEKNGPLAGLATVRGDEDILLITNKG 770

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
            ++ F+   + +  R   GVRL   ++      +     E +
Sbjct: 771 IIIRFNAGSVSQTGRSTLGVRLIRMEETAKVVTMAVIDPEEI 812


>gi|229550694|ref|ZP_04439419.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200]
 gi|229304127|gb|EEN70123.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200]
          Length = 833

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTSVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTSVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  +  V GD  + ++     ++ F++D + +  R   GVRL   +DG 
Sbjct: 741 TANITEKNGP-LAGLTTVNGDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGA 799

Query: 697 ISDVIC 702
               + 
Sbjct: 800 KVVTMA 805


>gi|295317483|gb|ADF97860.1| DNA gyrase, A subunit [Clostridium botulinum F str. 230613]
          Length = 819

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/760 (31%), Positives = 410/760 (53%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LIDN +++I  L+  I GPDFPT G ++     I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFG-LIVGTRGIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE   G   IVVTEIPYQV KS+LIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEEK-GRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L     PQV+ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALV-NNQPQVLNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR+     + K  +++ F+L+E Q 
Sbjct: 359 IRRRTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + V +++ G+I+          K     +
Sbjct: 479 ERKT--------EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +       +      +I + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E S+  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G + + +V +N   + F+ + +  M R   GV+  + ++   +  +   + +    + 
Sbjct: 651 TKGNNEIIIVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVVLGDEA-LLS 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 710 ISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/480 (10%), Positives = 133/480 (27%), Gaps = 24/480 (5%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA--KR 294
           + I+ +Y   +     R R   +     +   ++  +   +     + K+        + 
Sbjct: 345 KEILVNYVEFQKEVIRR-RTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEA 403

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
              L +  + S +  + +L  K + L      +      ++  +      +L    +   
Sbjct: 404 KEGLMNNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLS 463

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           +  + +++    +  E                +   K +++   +   I  +  +    +
Sbjct: 464 IIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQ 523

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                    T  + D  +      +       +       + + +  +        +   
Sbjct: 524 KRGGKGIQATSTKQDDFIENMF--VTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTN 581

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I   I                     +     K               +I      +   
Sbjct: 582 IVNII-------------PIENNEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSS 628

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
                L+A++ +E D L         + I++++ +G        ++         +   I
Sbjct: 629 IRKGGLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGRVATGV-KGI 687

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MK 651
            L  +   V+  V      LL +S  G     +  E   + R GK  +     +K   + 
Sbjct: 688 TLREDDKAVSMEVVLGDEALLSISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIV 747

Query: 652 LVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
               V   D + +V      +  ++ +I + SR   GV+L    +      I     E +
Sbjct: 748 GARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDI 807


>gi|222148193|ref|YP_002549150.1| DNA topoisomerase IV subunit A [Agrobacterium vitis S4]
 gi|221735181|gb|ACM36144.1| DNA topoisomerase IV A subunit [Agrobacterium vitis S4]
          Length = 758

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/746 (65%), Positives = 603/746 (80%), Gaps = 8/746 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +NV  + L++ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMG+   +AFKK
Sbjct: 13  DNVTPIDLKYALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGIRPNSAFKK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGDSAAAYRYTEA
Sbjct: 73  CARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDSAAAYRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT VA L+L+G+++DAVDFR TYNEED EPVV P  FPNLLANG SGIAVGMATSIP H
Sbjct: 133 RMTDVAGLLLEGIEQDAVDFRPTYNEEDDEPVVLPGAFPNLLANGASGIAVGMATSIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEY--------IIGPDFPTGGIIVESRESIVESYRLG 246
           N  E+C+AAL LI N   S+E+L           I GPDFPTGGI++ESRES++E+YR G
Sbjct: 193 NAHELCDAALYLIKNRSASVEELFADPAHPQRGGIEGPDFPTGGIVIESRESMLETYRTG 252

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RGGFRVRA+W  E++GRG + IV+T+IP+QVQKSRLIEKIAEL+IAKR+PLLEDIRDESA
Sbjct: 253 RGGFRVRAKWETEDLGRGGYQIVITQIPFQVQKSRLIEKIAELLIAKRLPLLEDIRDESA 312

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           EDVR+VL PK+R++DP +LMES+F LS++E+R PLNMNVLS G+VP+VM L+ +L EWL 
Sbjct: 313 EDVRVVLVPKSRTVDPTILMESLFKLSELESRIPLNMNVLSQGKVPKVMALNEVLLEWLD 372

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           HR++VL RRS FR+ AIDRR+EIL GLLIAYLN+DE+I IIR ED+ K  +++RF LT+N
Sbjct: 373 HRKDVLVRRSRFRLAAIDRRLEILGGLLIAYLNLDEVIRIIREEDEAKDALIARFELTDN 432

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILN+RLR+LRKLEE++I+ E D L  EK +I++LL S   QW  IA EI EVK+ +
Sbjct: 433 QAEAILNMRLRNLRKLEEFEIRKEHDALSKEKAEIETLLASDDLQWGTIASEIGEVKKKY 492

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +K+TD+GRRRT F     AD   +QQAMIEKEPITVVIS +GWIR+LK HS D  +L FK
Sbjct: 493 AKATDIGRRRTLFANAPDADVDAIQQAMIEKEPITVVISEKGWIRALKGHSYDKVSLTFK 552

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD L++A  A TTD+ILL++T GK YTL    L  GRGHGE I++++D+ ++QD++TAF
Sbjct: 553 EGDGLRVAFPAQTTDKILLVTTGGKVYTLGGDKLPGGRGHGEPIRIMVDMENDQDVLTAF 612

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           V+D   KLL+ S+ GN FIV ES+I ANTRKGK  + V   ++ KLVV ++GDHVAVVGE
Sbjct: 613 VHDPARKLLIASTGGNGFIVAESDITANTRKGKQVMNVGMPDETKLVVPISGDHVAVVGE 672

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           NRK+++F + Q+PEMSRGKGVRLQ YKDGG+SD+ CF + +GL+W DSAGRS+ RS+++L
Sbjct: 673 NRKMVVFPLAQVPEMSRGKGVRLQRYKDGGVSDIKCFTLADGLSWEDSAGRSFTRSKDEL 732

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLS 752
           L WLG R G G  VPKGFPRSGKF  
Sbjct: 733 LEWLGDRAGPGRTVPKGFPRSGKFSG 758


>gi|153827297|ref|ZP_01979964.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2]
 gi|149738788|gb|EDM53130.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2]
          Length = 894

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/817 (32%), Positives = 400/817 (48%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E   +  +L S ++    I  E+  ++  FS +        T         A
Sbjct: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   L +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVV 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     EG   +    
Sbjct: 715 DENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +  +        RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810


>gi|149193745|ref|ZP_01870843.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2]
 gi|149135698|gb|EDM24176.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2]
          Length = 812

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/749 (33%), Positives = 398/749 (53%), Gaps = 15/749 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   L + YL Y++S I  RA+PD+RDG KPVHRRI++AM +MG+   + +KKS
Sbjct: 2   QVIPVKIEDTLAKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMYKMGITSSSPYKKS 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD +VY++LVR+AQ F  R PLI GQGNFG+IDGD+AAA RYTEAR
Sbjct: 62  ARIVGDVIGKYHPHGDTAVYEALVRMAQNFSMREPLIDGQGNFGSIDGDNAAAMRYTEAR 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++AE +L+ +D+D VDF   Y+  + EPVV P++FPNLL NG+SGIAVGMAT+IP HN
Sbjct: 122 LTKIAEELLKDIDKDTVDFIPNYDGTEKEPVVLPARFPNLLVNGSSGIAVGMATNIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +IDN E ++E +L++I GPDFPTGGII      + E+Y+ GRG  ++RA+
Sbjct: 182 LGELIDALVYMIDNKETNLEDILQFIKGPDFPTGGIIFGRGGIL-EAYKSGRGSIKIRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             + E       IV+ E+PYQV K++LIEKI+EL+  K I  + +IRDES  +   V+  
Sbjct: 241 HHI-EHRGNREIIVIDELPYQVNKAKLIEKISELVKDKIIDGISEIRDESDREGIRVVIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +    ++++ +++  + M+  F +NM  +   + P++  L  IL  ++  R+ V+ RR
Sbjct: 300 LKKDAMSEIILNNLYKHTQMQVSFGINMLAILD-KEPKLFNLMEILNTFIKFRKTVVIRR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + + ++   +R  IL+GLLIA  NIDE++ II+N    K    +   RF L+E Q  AIL
Sbjct: 359 TIYELEEAKKRAHILEGLLIALANIDEVVTIIKNSQSSKEAKTNLIERFDLSEVQAQAIL 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L  L  LE  +++ E D L  +   + S+L       N I  E  E+++ ++     
Sbjct: 419 DMKLSRLTSLETNKLQKEYDELQEKIAYLTSILKEESVLNNVIKEEFLEIRKKYANERKT 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                                +       V                   AL   E D ++
Sbjct: 479 EIVDDYDDIDIEDLIPNEDMVVTITHRGYVKRVPLKTYERQNRGGKGKKALTTYENDFIE 538

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF---V 607
               A   D +++++  G+ + L    +        G+AI  LI+L+ ++ I T      
Sbjct: 539 DFYIAKAHDTLMIITNKGQLHWLKVYKIPEGSRTSKGKAIVNLINLDKDEKIQTIIKTSD 598

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVG 665
           +D    L   +  G       SE       G   + +  ++++     V  D   + +V 
Sbjct: 599 FDENKSLAFFTKNGIVKRTNLSEFKNIRSTGVRAIVIDKDDELVTAKIVKEDDKYLFIVT 658

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           +    + F +D + EM R  +GV+  ++K +G           E    +  + + + +  
Sbjct: 659 KKGMAIRFPVDAVREMGRNARGVKGITFKIEGDEVVGALSLRDEKQEILSVSEKGFGKRT 718

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 L  RGG G +  K   ++G  + 
Sbjct: 719 EAEAYRLTNRGGKGVIAMKLTNKTGDLVG 747



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 8/160 (5%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSK 620
            + +++  G A   P   +     +   ++ +       ++V A    D   ++L VS K
Sbjct: 653 YLFIVTKKGMAIRFPVDAVREMGRNARGVKGITFKIEGDEVVGALSLRDEKQEILSVSEK 712

Query: 621 GNAFIVEESEIIANTRKGK--TFLKV--SSEEKMKLVVKVTGDH-VAVVGENRKLLIFSI 675
           G     E        R GK    +K+   + + +  VV    +H + ++    K++  SI
Sbjct: 713 GFGKRTEAEAYRLTNRGGKGVIAMKLTNKTGD-LVGVVATEENHDLMLLTSKGKMIRVSI 771

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           D I +  +  +GVRL    D      +     +    +  
Sbjct: 772 DSISKTGKNTQGVRLVRLDDDDKVVSVAKTPSQKEELLIE 811


>gi|330808287|ref|YP_004352749.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376395|gb|AEA67745.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 887

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/795 (32%), Positives = 412/795 (51%), Gaps = 65/795 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G DF   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE+++++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSTVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++ +E   
Sbjct: 422 VAMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +LNS  +    I  E+  ++  +        RRT   +   A        
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELEVIRAEYGD-----VRRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           MI +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +LL
Sbjct: 534 MIPEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSK 620
            S+ GK Y L    +        G  +  L+ L+  + I T    +       + + ++ 
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLDDGEYITTMLPVEEYTEGHYIFMATAN 653

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G                G   L++   + +       G+  V +  +  K+  F    + 
Sbjct: 654 GTVKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVR 713

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR     +G     +     EG   + ++ R Y +          KRGG G 
Sbjct: 714 AMGRTARGVRGMRLPEGQKLISMLI-PEEGSQILTASARGYGKRTAISEFPEYKRGGQGV 772

Query: 739 LVPKGFPRSGKFLSS 753
           +      R+G+ + +
Sbjct: 773 IAMVSNDRNGRLVGA 787


>gi|94309658|ref|YP_582868.1| DNA gyrase subunit A [Cupriavidus metallidurans CH34]
 gi|93353510|gb|ABF07599.1| DNA gyrase (type II topoisomerase), subunit A [Cupriavidus
           metallidurans CH34]
          Length = 897

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/802 (29%), Positives = 383/802 (47%), Gaps = 69/802 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +LQ +D++ VDF   Y+  + EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHEMLQDIDKETVDFEPNYDGSEKEPGILPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+ NP+ ++++L+E +  PDFPT G I+   + + E YR GRG   +RAR   
Sbjct: 190 VVDACLHLLRNPDATVDELIELVPAPDFPTAG-IIYGIQGVREGYRTGRGRVVMRARTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+  P++++ +++  + ++  F +NM  L     P+++ L  +L  +L+HRREV+ RR+ 
Sbjct: 309 RNEVPEVVLNNLYKNTQLQDTFGMNMVALVD-GQPRLLNLRQMLDAFLSHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           F ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 FELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKPWDSGLVREMLARA 427

Query: 415 ---------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTAGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++     +  +L   ++    I  E+  ++  F                +          
Sbjct: 488 VMGLIADLLDILARPERITTIITEELGAIRAEFGDERRSQIELNATELDTEDLITPQDMV 547

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 548 VTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFSNRGRLY 607

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    +        G  I  +  L   + I        +D+   + + +++G       
Sbjct: 608 WLKVYEVPQGSRNSRGRPIVNMFPLADGEKINVILPVRQFDAEHFIFMATARGTVKKTVL 667

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
           ++     + G   + +   + +       G H V +  +  K + F  + +  M R  +G
Sbjct: 668 TDFSNPRKAGIIAVDLDEGDFLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG 727

Query: 687 VRLQSYKDGGISDVICFKICEGL---------------TWIDSAGRSYNRSENDLLGWLG 731
           VR  +  +G     +     E                 + + +    Y +          
Sbjct: 728 VRGMNLDEGQAVIAMLVAPAESAETESSVAEGDVSPVGSVLTATENGYGKRTPISEYTRH 787

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            RG  G +  +   R+G+ +++
Sbjct: 788 GRGTKGMIAIQTSERNGRVVAA 809



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 22/160 (13%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC---- 612
                 ++L S  GKA      ++         ++ + +L+  Q ++   V  +      
Sbjct: 695 TDGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGM-NLDEGQAVIAMLVAPAESAETE 753

Query: 613 ------------KLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVT 657
                        +L  +  G       SE   + R  KG   ++ S    ++     V+
Sbjct: 754 SSVAEGDVSPVGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGRVVAAALVS 813

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
             D + ++     L+   + +I EM R  +GV L +  +G
Sbjct: 814 PEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEG 853


>gi|54309620|ref|YP_130640.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum SS9]
 gi|46914058|emb|CAG20838.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum SS9]
          Length = 894

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/799 (31%), Positives = 398/799 (49%), Gaps = 58/799 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  PVV P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLDKETVDYVPNYDGTEFIPVVMPTRVPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +I++E+L++YI GPDFPT   ++  R+ I+++Y  
Sbjct: 177 GMATNIPPHNLGEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAA-LINGRKGIIDAYHT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRAKANIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVVECKRDAVGEVILNNLYSQTQLQTTFGINMVALDH-GQPKLFGLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------- 412
            HRREV+ RR+ F ++    R  +L+GL IA +NID II +I++                
Sbjct: 355 NHRREVVTRRTIFELRKARERAHLLEGLAIALVNIDAIIELIKSAPTPQVAREGLLASPW 414

Query: 413 ------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 QLGDVAAMLERGGVDAARPEWLEPQYGIHGGQYFLTEPQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL   E++  +L S ++    I  E+  VKE F+          +          
Sbjct: 475 EEYKGLLDVIEELLLILGSPERLMEVIRDELHAVKEQFNDERRTEITAASHDIDLEDLIT 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +       A   K+ D ++  L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHEGYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L   S    G+ I  ++ L   + I        Y++   + + ++ G  
Sbjct: 595 RGRMYWLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVREYEADKYVFMATADGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF--SIDQ--- 677
                ++       G   + +   + +  V      D + +  +  K++ F  S D+   
Sbjct: 655 KKTPLTDFSRPRSAGIIAVNLRDGDSLIGVDITNSTDDIMLFSKFGKVVRFYESADENGK 714

Query: 678 --IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             +  M R   GVR      G     +     EG   +      Y +           R 
Sbjct: 715 GGVRGMGRTAAGVRGMKLAAGDKVVSLIVPHNEGD-VLTVTENGYGKRTALTEYPAKSRA 773

Query: 735 GVGSLVPKGFPRSGKFLSS 753
             G +  K   R+G  + +
Sbjct: 774 TQGVVSIKVSDRNGSVVGA 792


>gi|283469235|emb|CAQ48446.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ST398]
          Length = 889

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNVGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLT 710
           +   
Sbjct: 813 DADD 816



 Score = 41.7 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNVGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|110633477|ref|YP_673685.1| DNA topoisomerase IV subunit A [Mesorhizobium sp. BNC1]
 gi|110284461|gb|ABG62520.1| DNA topoisomerase IV subunit A [Chelativorans sp. BNC1]
          Length = 750

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/738 (61%), Positives = 586/738 (79%), Gaps = 2/738 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++   V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+H M  + L+    F K
Sbjct: 12  DSASPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHTMRLLRLNPEQGFAK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+V+GK HPHGDQS+YD+LVRLAQPF  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 72  CARIVGDVMGKFHPHGDQSIYDALVRLAQPFAMRYPLVDGQGNFGNIDGDNAAAMRYTEA 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+VA  +L G+ EDAVDFR TYNEED EP+V P  FPNLL NG+SGIAVGMATS+P H
Sbjct: 132 RMTEVAAELLSGITEDAVDFRPTYNEEDEEPIVLPGAFPNLLCNGSSGIAVGMATSVPPH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AALALID+P++ + +LL+++ GPDFPTGGIIVE R SI E+Y  GRGGFR+RA
Sbjct: 192 NAAEVCDAALALIDDPDVPVSRLLDFVQGPDFPTGGIIVEGRASIREAYETGRGGFRLRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E+ GRG+W +VVTEIPY VQKSRLIEKIAELI+A+++PLLED+RDESAED+R+VL 
Sbjct: 252 RWHKEDQGRGTWNVVVTEIPYGVQKSRLIEKIAELILARKLPLLEDVRDESAEDIRVVLV 311

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+R+++P+LLMES+F L+D+ETRFPLNMNVLS G+VP V+ L  +L+EWL HRREVL R
Sbjct: 312 PKSRAVEPELLMESLFRLTDLETRFPLNMNVLSRGKVPSVLSLKDVLREWLDHRREVLVR 371

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+  I++R+EIL G L+AYLNIDE+I IIR ED+PKPVM+ RF+LT+NQ +AILN+
Sbjct: 372 RSQHRLAEIEKRLEILAGYLVAYLNIDEVIGIIREEDEPKPVMMERFNLTDNQAEAILNM 431

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDL 492
           RLR+LRKLEE++I++E D L  EK +I++LL S  +QW  +  E+ +V++ F   K+  L
Sbjct: 432 RLRALRKLEEFEIRTEFDKLSEEKTQIEALLASEAKQWKTVRWEVAKVRQTFDPEKNPAL 491

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           GRRRTTF +    D   +QQAMIE+EPITV++S +GW+R++K H  DLS + FKEGDSLK
Sbjct: 492 GRRRTTFGDAPSHDLEDVQQAMIEREPITVILSEKGWLRAMKGHLTDLSTVVFKEGDSLK 551

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           ++ HA TTD+ILL +T GK YT+    L  GRGHGE +++++D+ ++Q +VTAF +D   
Sbjct: 552 LSFHAQTTDKILLFTTGGKFYTIGGDRLPGGRGHGEPVRIMVDMENDQAVVTAFAHDPER 611

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           +LL+ S  GN FIV E E++ANTRKGK  + V + ++ +L + V+GDH A+VGENRKLL+
Sbjct: 612 RLLIASYAGNGFIVPEKEVVANTRKGKQIMNVKTPDEARLCIPVSGDHAAIVGENRKLLV 671

Query: 673 FSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           F ++Q+PEM RGKGVRLQ YKDGGI+D+  F I +GLTW DSA R++ RS+++L  W+G 
Sbjct: 672 FPLEQVPEMVRGKGVRLQRYKDGGIADLKTFAIADGLTWQDSADRTFTRSKDELAEWIGD 731

Query: 733 RGGVGSLVPKGFPRSGKF 750
           R   G + PKGFPR+GKF
Sbjct: 732 RAAAGRMAPKGFPRTGKF 749


>gi|315633980|ref|ZP_07889269.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter
           segnis ATCC 33393]
 gi|315477230|gb|EFU67973.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter
           segnis ATCC 33393]
          Length = 885

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/810 (31%), Positives = 397/810 (49%), Gaps = 73/810 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +   ++K
Sbjct: 6   QDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG++DGD+ AA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L+ +I GPDFPT   ++  R+ I E+Y+ GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAA-LINGRKGIEEAYKTGRGKIYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E   +G   I+V EIPYQV K++LIEKIAE +  K+I  +  +RDES +D   ++ 
Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++ L+ M+  F +N+  L     P+++ L  +++ ++ HRREV+ R
Sbjct: 305 EIKRDAVGEVVLNNLYALTQMQVTFGINIVALDH-GQPKLLNLKQLIEAFVLHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED----------------------- 411
           R+ F ++    R  IL+GL IA  N+D II +IR                          
Sbjct: 364 RTIFELRKARERTHILEGLAIALANVDPIIELIRQAPNPESAKRELLARPWQLGHVAEML 423

Query: 412 --------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                         +   +    + LTE Q  AIL+LRL+ L  L   +I  E   LL  
Sbjct: 424 AATGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLEA 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+ +++E F+          +         A     +   
Sbjct: 484 IGELLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLS 543

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y L  
Sbjct: 544 HEGYVKYQPISDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKV 603

Query: 578 GNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
             L        G  I  ++ LN N+ I        Y+    +++ ++ G    +  +E  
Sbjct: 604 YQLPQASRGSRGRPIVNILPLNENERITAILPVTAYEEDKFVVMATAGGIVKKIALTEFS 663

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
                G   L +  E+++  V    G + + +     +++ FS   +  M R   GVR  
Sbjct: 664 RPRSSGIIALNLRDEDELIGVDITDGNNEIMLFSSQGRVVRFSESAVRAMGRLATGVRGI 723

Query: 691 SYK--------------------------DGGISDVICFKICEGL-TWIDSAGRSYNRSE 723
                                        D  I  V+   I +     + +    Y +  
Sbjct: 724 KLALTNDLNDDESAGEIEEVSDDNTEETLDLNIDKVVSLVIPKNDGEILTATQNGYGKRT 783

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    R   G +  K   R+GK +++
Sbjct: 784 KLEEYPTKSRNTKGVISIKVSERNGKVVAA 813



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLV 653
           +   +V+  +  +  ++L  +  G     +  E    +R  K  + +     + + +   
Sbjct: 755 NIDKVVSLVIPKNDGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERNGKVVAAT 814

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD----VICFKICEG 708
             V  D + ++ +   L+   + ++  + R  +GVRL    +         +      EG
Sbjct: 815 QVVDTDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSENEHVVSLERICDVDDEEG 874

Query: 709 LT 710
             
Sbjct: 875 EQ 876


>gi|255974527|ref|ZP_05425113.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|255967399|gb|EET98021.1| conserved hypothetical protein [Enterococcus faecalis T2]
          Length = 807

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 71/188 (37%), Gaps = 8/188 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  +  V GD  + ++     ++ F++D + +  R   GVRL   +DG 
Sbjct: 741 TANITEKNGP-LAGLTTVNGDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGA 799

Query: 697 ISDVICFK 704
               +   
Sbjct: 800 KVVTMAVV 807


>gi|325292532|ref|YP_004278396.1| DNA topoisomerase IV subunit A [Agrobacterium sp. H13-3]
 gi|325060385|gb|ADY64076.1| DNA topoisomerase IV subunit A [Agrobacterium sp. H13-3]
          Length = 750

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/737 (66%), Positives = 607/737 (82%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMG+   +AFK
Sbjct: 12  DDNIHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGIRPNSAFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD AAAYRYTE
Sbjct: 72  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGNIDGDGAAAYRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT VA L+L+G+ EDAVDFR TYNEED EPVV P  FPNLLANG SGIAVGMATSIP 
Sbjct: 132 ARMTDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGASGIAVGMATSIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ ++EKL+E+I GPD PTGG+I+ESRE+I+E+Y+ GRGGFRVR
Sbjct: 192 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENILEAYKTGRGGFRVR 251

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL++A+++PLLED+RDESAEDVRIVL
Sbjct: 252 AKWETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLLARKLPLLEDVRDESAEDVRIVL 311

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PKNR++D  LLMES+F LSD+E+R PLNMNVLS+GRVP+VM L+ +L EWLAHR++VL 
Sbjct: 312 VPKNRTVDATLLMESLFRLSDLESRLPLNMNVLSLGRVPKVMALNEVLSEWLAHRKDVLV 371

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS  R+ AIDRR+EIL GLL+AYLN+DE+I IIR ED+PK VM++++SLT+NQ +AILN
Sbjct: 372 RRSRHRLAAIDRRLEILGGLLVAYLNLDEVIRIIREEDEPKQVMMAKWSLTDNQAEAILN 431

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LRKLEE++I+ E D L +EK +I+ LL S ++QW  +A EI EVK+ ++K+T++G
Sbjct: 432 MRLRNLRKLEEFEIRKEFDELSSEKAEIEGLLASDEKQWQTVAWEIGEVKKKYAKATEIG 491

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRT F +   AD   +QQAMIEKEP+T+VIS +GWIR+LK H  D SAL FKEGD  K+
Sbjct: 492 RRRTQFADAPDADIEAIQQAMIEKEPVTIVISQKGWIRALKGHMSDTSALTFKEGDGPKL 551

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD++LLL+T GKAYTL A  L  GRGHGE I++++D+ ++QDI+TAFV+D + K
Sbjct: 552 AFPAQTTDKLLLLTTGGKAYTLGADKLPGGRGHGEPIRIMVDMENDQDILTAFVHDPSRK 611

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+VS+ GN FIV ESE++ANTRKGK  + V+  ++ KL V VTGDHVAVVGENRKLL F
Sbjct: 612 LLLVSTGGNGFIVAESEMVANTRKGKQIMNVAMPDEAKLAVPVTGDHVAVVGENRKLLAF 671

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + Q+PEMSRGKGVRLQ YKDGG+ DV CF + +GL+W D+AGR + +   +L  WL  R
Sbjct: 672 PLSQVPEMSRGKGVRLQRYKDGGVVDVKCFALADGLSWSDTAGRLFTKVGEELREWLADR 731

Query: 734 GGVGSLVPKGFPRSGKF 750
             VG  VPKGFPRSGKF
Sbjct: 732 ATVGRTVPKGFPRSGKF 748


>gi|260549312|ref|ZP_05823532.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
 gi|260407718|gb|EEX01191.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
          Length = 904

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/827 (30%), Positives = 409/827 (49%), Gaps = 95/827 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  DNP ISIE L+EYI GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++  
Sbjct: 240 IRGKYHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F+ + +E  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVVVNNLFLNTQLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ F ++    R  IL+GL +A  NIDEII  I+    P                 
Sbjct: 359 VVTRRTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGV 418

Query: 420 -------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV AIL LRL  L  LE+ ++ 
Sbjct: 419 VSLLEKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN        I  E+ +V + +  +     RRT   E   +   
Sbjct: 479 AEYTEILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDA-----RRTEIVE---SRVD 530

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+         ++ +      SA   K+ D ++  + A   
Sbjct: 531 FCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             +L  +  GK Y L    +       +   I  L+ L+  + +        +     + 
Sbjct: 591 ATVLCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPENHYVF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + ++ G    VE  +       G   ++++ E+ +  V    G+  + +     K + F+
Sbjct: 651 MATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFA 710

Query: 675 IDQIPEMSR-GKGVRLQS-------YKDGGISD--------------------VICFKIC 706
              +  M R  KGVR            +                         V    + 
Sbjct: 711 ETDVRAMGRTAKGVRGMRVSFASSTLSEEDAEVENDESDDNDDSADSSLVSRIVSLVVVP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 771 ETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT 657
            IV+  V   T ++L  S+ G       ++     R GK  + + + E   ++   V + 
Sbjct: 762 RIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSID 821

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICF 703
               + ++ +   L+     ++    R  +GVRL    ++  +  V+  
Sbjct: 822 ETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870


>gi|257088491|ref|ZP_05582852.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188]
 gi|312903112|ref|ZP_07762293.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635]
 gi|256997303|gb|EEU83823.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188]
 gi|310633503|gb|EFQ16786.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635]
 gi|315578844|gb|EFU91035.1| DNA gyrase, A subunit [Enterococcus faecalis TX0630]
 gi|327533859|gb|AEA92693.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           faecalis OG1RF]
          Length = 833

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 68/185 (36%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++     ++ F++D + +  R   GVRL   +DG  
Sbjct: 741 TANITEKNGPLAGLTTVNGNEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAK 800

Query: 698 SDVIC 702
              + 
Sbjct: 801 VVTMA 805


>gi|153938259|ref|YP_001389376.1| DNA gyrase subunit A [Clostridium botulinum F str. Langeland]
 gi|152934155|gb|ABS39653.1| DNA gyrase, A subunit [Clostridium botulinum F str. Langeland]
          Length = 831

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/760 (31%), Positives = 410/760 (53%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LIDN +++I  L+  I GPDFPT G ++     I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFG-LIVGTRGIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE   G   IVVTEIPYQV KS+LIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEEK-GRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L     PQV+ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALV-NNQPQVLNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR+     + K  +++ F+L+E Q 
Sbjct: 359 IRRRTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + V +++ G+I+          K     +
Sbjct: 479 ERKT--------EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +       +      +I + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E S+  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G + + +V +N   + F+ + +  M R   GV+  + ++   +  +   + +    + 
Sbjct: 651 TKGNNEIIIVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVVLGDEA-LLS 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 710 ISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/479 (10%), Positives = 132/479 (27%), Gaps = 24/479 (5%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA--KR 294
           + I+ +Y   +     R R   +     +   ++  +   +     + K+        + 
Sbjct: 345 KEILVNYVEFQKEVIRR-RTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEA 403

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
              L +  + S +  + +L  K + L      +      ++  +      +L    +   
Sbjct: 404 KEGLMNNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLS 463

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           +  + +++    +  E                +   K +++   +   I  +  +    +
Sbjct: 464 IIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQ 523

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                    T  + D  +      +       +       + + +  +        +   
Sbjct: 524 KRGGKGIQATSTKQDDFIENMF--VTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTN 581

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I   I                     +     K               +I      +   
Sbjct: 582 IVNII-------------PIENNEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSS 628

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
                L+A++ +E D L         + I++++ +G        ++         +   I
Sbjct: 629 IRKGGLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGRVATGV-KGI 687

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MK 651
            L  +   V+  V      LL +S  G     +  E   + R GK  +     +K   + 
Sbjct: 688 TLREDDKAVSMEVVLGDEALLSISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIV 747

Query: 652 LVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
               V   D + +V      +  ++ +I + SR   GV+L    +      I     E 
Sbjct: 748 GARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|262402399|ref|ZP_06078960.1| DNA gyrase subunit A [Vibrio sp. RC586]
 gi|262351181|gb|EEZ00314.1| DNA gyrase subunit A [Vibrio sp. RC586]
          Length = 894

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/817 (31%), Positives = 401/817 (49%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR+   P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E   +  +L S ++    I  E+  ++  FS +        T         A
Sbjct: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   + +  ++ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKFGKVVRFKESEETAVV 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     EG   +    
Sbjct: 715 DENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKAEGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +  +        RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810


>gi|315168225|gb|EFU12242.1| DNA gyrase, A subunit [Enterococcus faecalis TX1341]
          Length = 833

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDST 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  +  V GD  + ++     ++ F++D + +  R   GVRL   +DG 
Sbjct: 741 TANITEKNGP-LAGLTTVNGDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGA 799

Query: 697 ISDVIC 702
               + 
Sbjct: 800 KVVTMA 805


>gi|229589164|ref|YP_002871283.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25]
 gi|229361030|emb|CAY47892.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25]
          Length = 884

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/795 (32%), Positives = 414/795 (52%), Gaps = 65/795 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE+++++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSMIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALIKMPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++ +E   
Sbjct: 422 VAMVERAGADSCRPETLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +L+S  +    I  E+  ++  +        RRT   +   A        
Sbjct: 482 ILNQIGELIRILSSAVRLMEVIREELEVIRAEYGD-----VRRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           MI +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +LL
Sbjct: 534 MIPEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSK 620
            S+ GK Y L    +        G  +  L+ L+ ++ I T    +       + + ++K
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFMATAK 653

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G                G   L++   + +       G+  V +  +  K+  F    + 
Sbjct: 654 GTVKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVR 713

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR     +G     +     EG   + ++ R Y +          KRGG G 
Sbjct: 714 AMGRTARGVRGMRLPEGQKLISMLI-PEEGSQILTASERGYGKRTAISEFPEYKRGGQGV 772

Query: 739 LVPKGFPRSGKFLSS 753
           +      R+G+ + +
Sbjct: 773 IAMVSNDRNGRLVGA 787


>gi|226940755|ref|YP_002795829.1| DNA gyrase subunit A [Laribacter hongkongensis HLHK9]
 gi|226715682|gb|ACO74820.1| GyrA [Laribacter hongkongensis HLHK9]
          Length = 859

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/797 (31%), Positives = 402/797 (50%), Gaps = 63/797 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ L  +    VSL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+
Sbjct: 2   TDHLFAKETIPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDW 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG+IDGD+AAA
Sbjct: 62  NRPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYPLVDGQGNFGSIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM ++A  +L  ++++ VDF   Y+  + EP+V P+K PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEIRMAKIAHELLADIEKETVDFGPNYDGSEHEPLVLPAKIPNLLINGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +A LAL+ N +++I++L++ I  PDFPT G I+     + E YR GRG
Sbjct: 182 TNIPPHNLNEVVDALLALLANSDMTIDELIDIIPAPDFPTAG-IIYGLAGVREGYRSGRG 240

Query: 249 GFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +RAR  VE++GRG    +++ E+PYQV K+ L+ KI EL+  K I  + D+RDES +
Sbjct: 241 RVVIRARTHVEDIGRGDRQALIIDELPYQVNKANLLIKIGELVREKAIDGISDLRDESDK 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               V+    R   PD+++ +++  + ++  F +NM  L     P+++ L  IL+E+L H
Sbjct: 301 SGMRVVIELKRGEVPDVVLNNLYKQTQLQDSFGMNMVALVD-GQPRLLNLKQILEEFLRH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416
           RREV+ RR+ F ++    R  +L+GL +A  N+DEIIA+I+    P              
Sbjct: 360 RREVVTRRTIFELRKARERGHVLEGLAVALSNVDEIIALIKAAPTPPVAKAELMARQWRS 419

Query: 417 --------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                       + + L+E Q  AIL LRL+ L  LE+ +I +E
Sbjct: 420 PLVEEMLARVELDKARPDGLLPEFGLQANGYRLSETQAQAILELRLQRLTGLEQDKIVAE 479

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
             +++     +  +L   ++    IA E+ ++K  F        RR+             
Sbjct: 480 YRDVMDTIMDLLDILARPERVSQIIADELNQIKTQFGD-----TRRSEIEPFGGD---IN 531

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDR 562
            + +I  + + V +S+ G++++                 A   K+ D ++    A+T D 
Sbjct: 532 LEDLITPQDMVVTLSHTGYMKTQPVTDYQAQRRGGRGKQAAATKDEDFIENLFVANTHDF 591

Query: 563 ILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVV 617
           +L  S+ G+ Y L    L     +  G+ I  L+ L   + I        +  T  + + 
Sbjct: 592 LLCFSSAGRMYWLKVYELPQGSRQSRGKPIVNLLPLVEGEKINAILPVKGFSDTEYVFMA 651

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           +++G       S        G   + +   + +      +G+  V +  +  K + F   
Sbjct: 652 TARGTVKKTPLSAFSNRRSAGIIAVDLDEGDYLIGAAVTSGNSEVMLFSDAGKAVRFDEA 711

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            +  M R  +GVR     D      +     E    + +    Y +          +RG 
Sbjct: 712 DVRPMGRNARGVRGMELGDAQQVIGMLVSNEETSQVLTATANGYGKRTPIGDYRKSRRGT 771

Query: 736 VGSLVPKGFPRSGKFLS 752
            G +      R+G  ++
Sbjct: 772 QGVIAIDTGERNGALVA 788



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 5/168 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  + A+   EGD L  A        ++L S  GKA      ++     +   ++ +
Sbjct: 667 NRRSAGIIAVDLDEGDYLIGAAVTSGNSEVMLFSDAGKAVRFDEADVRPMGRNARGVRGM 726

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
              +  Q I      + T ++L  ++ G        +   + R  +  + + + E+   +
Sbjct: 727 ELGDAQQVIGMLVSNEETSQVLTATANGYGKRTPIGDYRKSRRGTQGVIAIDTGERNGAL 786

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
             V  V   D + ++     L+   + ++ E  R  +GVRL +   G 
Sbjct: 787 VAVALVADSDELMLMTTGGVLIRTRVSEVRETGRAAQGVRLINLDAGE 834


>gi|291618165|ref|YP_003520907.1| GyrA [Pantoea ananatis LMG 20103]
 gi|291153195|gb|ADD77779.1| GyrA [Pantoea ananatis LMG 20103]
 gi|327394560|dbj|BAK11982.1| DNA gyrase subunit A GyrA [Pantoea ananatis AJ13355]
          Length = 880

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHDLLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+    LA I++  ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLREVINGCLAYIEDENISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I++ E+PYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARGEVEVDAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++T F +NM  L     P++M L  IL+ +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKIMALKEILEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKAGLIAQS 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVSAMLERAGDDAARPEWLEAQFGIREGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S ++    I  E+  +++ F           +         
Sbjct: 475 LDEYKQLLDQIAELLHILGSSERLMEVIREELELMRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y     + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFNIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                  E       G   + +  ++++  V    G D   +     K++ F+   +  M
Sbjct: 655 VKKTGLQEFSRPRSAGIIAINLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +   +       R   G + 
Sbjct: 715 GRTASGVRGIKLAQNDRVVSLIVPREEGA-ILTVTQNGYGKRTANSEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGPVIGA 786


>gi|153212262|ref|ZP_01948050.1| DNA gyrase, subunit A [Vibrio cholerae 1587]
 gi|124116640|gb|EAY35460.1| DNA gyrase, subunit A [Vibrio cholerae 1587]
          Length = 894

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/817 (32%), Positives = 400/817 (48%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E   +  +L S ++    I  E+  ++  FS +        T         A
Sbjct: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   L +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVV 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     EG   +    
Sbjct: 715 DENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +  +        RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810


>gi|257081352|ref|ZP_05575713.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256989382|gb|EEU76684.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 838

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  +  V GD  + ++     ++ F++D + +  R   GVRL   +DG 
Sbjct: 741 TANITEKNGP-LAGLTTVNGDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGA 799

Query: 697 ISDVIC 702
               + 
Sbjct: 800 KVVTMA 805


>gi|153801315|ref|ZP_01955901.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3]
 gi|229529662|ref|ZP_04419052.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)]
 gi|124123140|gb|EAY41883.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3]
 gi|229333436|gb|EEN98922.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)]
          Length = 894

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/817 (32%), Positives = 400/817 (48%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E   +  +L S ++    I  E+  ++  FS +        T         A
Sbjct: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   L +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVV 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     EG   +    
Sbjct: 715 DENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +  +        RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810


>gi|29374667|ref|NP_813819.1| DNA gyrase, A subunit [Enterococcus faecalis V583]
 gi|229547124|ref|ZP_04435849.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322]
 gi|256618522|ref|ZP_05475368.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256761859|ref|ZP_05502439.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256854986|ref|ZP_05560347.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8]
 gi|256957010|ref|ZP_05561181.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|257078687|ref|ZP_05573048.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257084009|ref|ZP_05578370.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257087839|ref|ZP_05582200.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257421348|ref|ZP_05598338.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98]
 gi|294781254|ref|ZP_06746601.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1]
 gi|300862176|ref|ZP_07108256.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|307268922|ref|ZP_07550286.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248]
 gi|307274017|ref|ZP_07555227.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855]
 gi|307276494|ref|ZP_07557614.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134]
 gi|307284064|ref|ZP_07564234.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860]
 gi|307287176|ref|ZP_07567247.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109]
 gi|307296595|ref|ZP_07576415.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411]
 gi|312901291|ref|ZP_07760574.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470]
 gi|312951715|ref|ZP_07770609.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102]
 gi|15982568|dbj|BAB69479.1| DNA gyrase A subunit [Enterococcus faecalis]
 gi|29342125|gb|AAO79891.1| DNA gyrase, A subunit [Enterococcus faecalis V583]
 gi|229307706|gb|EEN73693.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322]
 gi|256598049|gb|EEU17225.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256683110|gb|EEU22805.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256709499|gb|EEU24546.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8]
 gi|256947506|gb|EEU64138.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256986717|gb|EEU74019.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256992039|gb|EEU79341.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256995869|gb|EEU83171.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257163172|gb|EEU93132.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98]
 gi|294451717|gb|EFG20172.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1]
 gi|295112345|emb|CBL30982.1| DNA gyrase subunit A [Enterococcus sp. 7L76]
 gi|300848701|gb|EFK76458.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|306495931|gb|EFM65519.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411]
 gi|306501774|gb|EFM71065.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109]
 gi|306503435|gb|EFM72684.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860]
 gi|306506821|gb|EFM75971.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134]
 gi|306509325|gb|EFM78385.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855]
 gi|306514730|gb|EFM83281.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248]
 gi|310630288|gb|EFQ13571.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102]
 gi|311291668|gb|EFQ70224.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470]
 gi|315026672|gb|EFT38604.1| DNA gyrase, A subunit [Enterococcus faecalis TX2137]
 gi|315030117|gb|EFT42049.1| DNA gyrase, A subunit [Enterococcus faecalis TX4000]
 gi|315033551|gb|EFT45483.1| DNA gyrase, A subunit [Enterococcus faecalis TX0017]
 gi|315036374|gb|EFT48306.1| DNA gyrase, A subunit [Enterococcus faecalis TX0027]
 gi|315143590|gb|EFT87606.1| DNA gyrase, A subunit [Enterococcus faecalis TX2141]
 gi|315148272|gb|EFT92288.1| DNA gyrase, A subunit [Enterococcus faecalis TX4244]
 gi|315153722|gb|EFT97738.1| DNA gyrase, A subunit [Enterococcus faecalis TX0031]
 gi|315155118|gb|EFT99134.1| DNA gyrase, A subunit [Enterococcus faecalis TX0043]
 gi|315158752|gb|EFU02769.1| DNA gyrase, A subunit [Enterococcus faecalis TX0312]
 gi|315170507|gb|EFU14524.1| DNA gyrase, A subunit [Enterococcus faecalis TX1342]
 gi|315174177|gb|EFU18194.1| DNA gyrase, A subunit [Enterococcus faecalis TX1346]
 gi|315573986|gb|EFU86177.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309B]
 gi|315581937|gb|EFU94128.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309A]
 gi|323479245|gb|ADX78684.1| DNA gyrase, A subunit [Enterococcus faecalis 62]
          Length = 833

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  +  V GD  + ++     ++ F++D + +  R   GVRL   +DG 
Sbjct: 741 TANITEKNGP-LAGLTTVNGDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGA 799

Query: 697 ISDVIC 702
               + 
Sbjct: 800 KVVTMA 805


>gi|302878364|ref|YP_003846928.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2]
 gi|302581153|gb|ADL55164.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2]
          Length = 879

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/791 (31%), Positives = 400/791 (50%), Gaps = 66/791 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP+VFP++FPNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LAL+ NPE+ IE+L+EY+  PDFPT G  +     + E YR GRG   +RAR   
Sbjct: 190 VIDACLALLKNPEMDIEELIEYVPAPDFPTAG-FIYGLAGVKEGYRTGRGRVIMRARCHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++G+G    I++ E+PYQV K+ L+ KI E++  KR+  + +IRDES +     +    
Sbjct: 249 EDIGKGERQAIIIDELPYQVNKANLLMKIGEMVREKRLEGISEIRDESDKSGMRAVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  + D+L+  ++  + M+  F +NM  +     P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGENADVLLNKLYKDTQMQDSFGINMVAIVD-GQPRLLNLKQVMDAFLRHRREVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------------- 415
           F ++    R  +L+GL +A  N+DEIIA+I+    P                        
Sbjct: 368 FELRKARERGHVLEGLAVALSNVDEIIALIKAAPAPSDAKRELMAKSWRSELVEDMLSRV 427

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L++ Q  AIL LRL+ L  +E+ +I  E   ++ +
Sbjct: 428 SDASRPDGLAPQFGLIVADNARFYHLSDAQAQAILELRLQRLTGMEQDKIIGEYREVMDK 487

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L   ++    I  E+  VK  F       +RR+     +        + +I  
Sbjct: 488 IADLLDILAKPERVTAIIGDELVAVKTQFGD-----KRRSEIVTHTHDMS---MEDLIPP 539

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G++++ K               A   K+ D +     A+T + IL  S  
Sbjct: 540 EDVVVTLSHGGYMKAQKMDDYQAQKRGGRGRQATRNKDDDFIDNLFVANTHNFILCFSNK 599

Query: 570 GKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y +   ++  G     G+ I  L+ L   + I        +     +   ++ G   
Sbjct: 600 GRVYWMKVYDVPQGSSGARGKPIVNLLPLEEGEKINAILPVTEFAEDKYVFFATANGTVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               ++     ++G   + +  ++ +  V    G H V +   + K + F    + E  R
Sbjct: 660 KTTLTDFSRPMKRGIIAINLDEDDYLIGVAITDGHHDVMLFSNSGKAVRFDEADVRETGR 719

Query: 684 G-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR     +      +     E  + + +    Y +           RG  G +  +
Sbjct: 720 ASRGVRGMKLHENQQVISMLVAENEQQSVLTATENGYGKRTPVGEYTRHGRGTQGMIAIQ 779

Query: 743 GFPRSGKFLSS 753
              R+GK +++
Sbjct: 780 TSERNGKVVAA 790



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 5/164 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A++  E D L           ++L S  GKA      ++         ++ +    
Sbjct: 672 RGIIAINLDEDDYLIGVAITDGHHDVMLFSNSGKAVRFDEADVRETGRASRGVRGMKLHE 731

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKMKLVV 654
           + Q I      +    +L  +  G        E   + R   G   ++ S    K+    
Sbjct: 732 NQQVISMLVAENEQQSVLTATENGYGKRTPVGEYTRHGRGTQGMIAIQTSERNGKVVAAT 791

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
            V   D + ++G N  L+   + +I EM R  +GV L + + G 
Sbjct: 792 LVNPEDEIMMIGTNGVLIRTRVREIREMGRTTQGVTLMNLEKGE 835


>gi|187924985|ref|YP_001896627.1| DNA gyrase subunit A [Burkholderia phytofirmans PsJN]
 gi|187716179|gb|ACD17403.1| DNA gyrase, A subunit [Burkholderia phytofirmans PsJN]
          Length = 878

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/789 (30%), Positives = 381/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE +I++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLKNPEATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRALTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMSIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L  +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEMLSCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENATAGGRDAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  +K  F  +             +       +
Sbjct: 488 REVMAQIADLLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQE 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + K       A   KE D +     A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y++    +        G  I  +  L   + I        + +   + + ++ G     
Sbjct: 608 VYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFSADKFVFMGTALGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-G 684
                    RKG   + +   + +       G H V +  ++ K + F  + +  M R  
Sbjct: 668 PLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  + + +    + +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 788 ERNGKVVAA 796



 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
               I      D    +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 738 GQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 797

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V  +  + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|15922996|ref|NP_370530.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50]
 gi|156978337|ref|YP_001440596.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3]
 gi|254663940|ref|ZP_05143412.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|38604966|sp|Q932M0|GYRA_STAAM RecName: Full=DNA gyrase subunit A
 gi|14245773|dbj|BAB56168.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720472|dbj|BAF76889.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3]
          Length = 889

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMKSLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLT 710
           +   
Sbjct: 813 DAED 816



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|227555690|ref|ZP_03985737.1| DNA gyrase, A subunit [Enterococcus faecalis HH22]
 gi|227175200|gb|EEI56172.1| DNA gyrase, A subunit [Enterococcus faecalis HH22]
          Length = 816

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  +  V GD  + ++     ++ F++D + +  R   GVRL   +DG 
Sbjct: 741 TANITEKNGP-LAGLTTVNGDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGA 799

Query: 697 ISDVIC 702
               + 
Sbjct: 800 KVVTMA 805


>gi|257871394|ref|ZP_05651047.1| DNA gyrase subunit A [Enterococcus gallinarum EG2]
 gi|257805558|gb|EEV34380.1| DNA gyrase subunit A [Enterococcus gallinarum EG2]
          Length = 825

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/751 (31%), Positives = 391/751 (52%), Gaps = 15/751 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   + E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 5   KQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 65  KSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D VDF+  Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP 
Sbjct: 125 ARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A   L++NPE++  +L+E + GPDFPTGG +V  +  I  +Y  G+G   VR
Sbjct: 185 HNLNEVIAAIELLMENPEVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYETGKGSITVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  V E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++
Sbjct: 244 GKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ +++ ++ +++ F  NM  +    VP+++ L  IL+ ++ H++EV+ 
Sbjct: 304 IDVRRDVSASVILNNLYKMTALQSSFGFNMLAIEK-GVPKILSLKRILENYIEHQQEVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDA 430
           RR+ F     + R  IL+GL IA  +IDEIIA+IR  +       +      L++ Q  A
Sbjct: 363 RRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNTMMERFSLSDRQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RLR L  LE  +I++E  +LL     +  +L + ++    I  E++E+ + F    
Sbjct: 423 ILDMRLRRLTGLERDKIENEYQSLLELIADLKDILANPQRVLEIIQTELQELGQRFGDER 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                      +   D    ++ +I       +        R+ +     +  +   + D
Sbjct: 483 RTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRVANSEFRAQRRGGRGVQGMGIHDED 542

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV 607
            +K  +   T D +L  +  GK Y      +       +   +  L+ ++ N+ I     
Sbjct: 543 FVKTLISCSTHDTLLFFTNMGKVYKAKGYEIPEYGRAAKGIPVINLLGIDSNERIEAIIS 602

Query: 608 YD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
                     L   +  G       +        G   + +   +++  VV+  G  V +
Sbjct: 603 ASGGPQEGRYLFFTTRLGIVKRTSVTAFSNIRANGLIAIGLRENDELVNVVETNGQDVMI 662

Query: 664 V-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +   N   + F  + + +M R   GVR    ++          I E    +      Y +
Sbjct: 663 IGTHNGYSVTFKEELVRDMGRTAAGVRGIRLREDDYVVGASV-IKEDSEVLVITENGYGK 721

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +  RGG G        ++G    
Sbjct: 722 RTKGSEYPIKGRGGKGIKTANITAKNGPLAG 752



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 6/173 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A+  +E D L   +  +  D +++ + +G + T     L+   G   A    I L  
Sbjct: 637 GLIAIGLRENDELVNVVETNGQDVMIIGTHNGYSVTFK-EELVRDMGRTAAGVRGIRLRE 695

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVV 654
           +  +V A V     ++LV++  G     + SE     R GK      +   +     L  
Sbjct: 696 DDYVVGASVIKEDSEVLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKNGPLAGLTT 755

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
               + + ++ +   ++ F+++ + +  R   GVRL   ++G     +     
Sbjct: 756 VSGKEDIMLITDKGVIIRFNVETVSQTGRATLGVRLMKMENGAKVVTMATVDP 808


>gi|295429303|ref|ZP_06821925.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|295127062|gb|EFG56706.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 887

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 403/762 (52%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 4   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 64  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 124 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 184 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 242

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 243 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 302

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 303 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +        +  RF L+E 
Sbjct: 362 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEK 421

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 422 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 481

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 482 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 534

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 535 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 594

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 595 ENDEIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 654

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 655 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 714

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 715 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 756



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 7/116 (6%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 694 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 753

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             + +      + + +V     ++   +  I +  R  +GVRL    D      + 
Sbjct: 754 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 809



 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 709 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 768

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV
Sbjct: 769 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKV 811


>gi|229521371|ref|ZP_04410790.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80]
 gi|229341469|gb|EEO06472.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80]
          Length = 895

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/817 (32%), Positives = 400/817 (48%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E   +  +L S ++    I  E+  ++  FS +        T         A
Sbjct: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   L +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVV 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     EG   +    
Sbjct: 715 DENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +  +        RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810


>gi|331005940|ref|ZP_08329286.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989]
 gi|330420235|gb|EGG94555.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989]
          Length = 869

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/786 (31%), Positives = 395/786 (50%), Gaps = 49/786 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +  +V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  A+
Sbjct: 4   LAHDVSPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG+IDGDSAAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSIDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMKKLAHELLADLEKETVDFVPNYDGSEQIPSVLPTRVPNLLINGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+    LA I+N +I+I++L+E I GPDFPTG  I   R  IV++YR GRG   V
Sbjct: 184 PHNLKEVVRGCLAFIENEDITIDELMEIIPGPDFPTGATIN-GRAGIVQAYRTGRGRIYV 242

Query: 253 RARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA+  V          I++TEIPYQ+ K++LIE+IAEL+  K+I  + ++RDES +D+R+
Sbjct: 243 RAKAHVERNDKTNKETIIITEIPYQLNKAKLIERIAELVKEKKIEGISELRDESTKDIRV 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V     R    D+++ +++  + ME  F +N+  L     P+++ L  +L+ ++ HRREV
Sbjct: 303 V-IELKRGEIGDVILNNLYAQTQMEGVFGINVVALVD-GQPKILNLKQLLECFVRHRREV 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------- 416
           + RR+ + ++    R  IL+GL +A  NIDE+I +I+N   P                  
Sbjct: 361 VTRRTIYLLRKARERGHILEGLAVAIANIDEVITLIKNSPSPAEAREGLLSRGWESASVA 420

Query: 417 ----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                    ++ L+  Q  AIL LRL  L  +E  ++  E    
Sbjct: 421 QFLERAGADACRPEGLGPEFGLRDEKYYLSPAQAQAILELRLHRLTGMEHDKLLDEYQEK 480

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +A   +   +L S  +    I  E+ E+++ +        + +              + +
Sbjct: 481 VARIAEFLEILGSSTRLMEVIREELEEIEKNYGDERRTDIQSSKRDLTIEDLITEEDRVV 540

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
                           ++ +      +A   K+ D ++  L A T D IL  +  GK Y 
Sbjct: 541 TISHGGYAKTQALSDYQAQRRGGTGKAATSVKDEDFVEHLLIASTHDTILCFTNAGKVYW 600

Query: 575 LPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEES 629
           L    +     +  G  I  L+ L+ ++ I +      YD    + + ++ G       +
Sbjct: 601 LKVFQIPLAGRQSRGRPIINLLPLDESERITSILPVREYDEDHFIFMATANGTVKKTPLT 660

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
           +       G   + +  +  +       G+  V +     K + F+ + +  M R  +GV
Sbjct: 661 QFARPRTSGLRAIDLEEDNHLVGTAVTDGNSDVMLFSSEGKAVRFNENDVRSMGRTSRGV 720

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R     +G     +     +G   +  +   Y +           R G G +  +   R+
Sbjct: 721 RGIRLAEGYEVISMVLPTEDGK-VLTVSENGYGKRTKVDEYATKGRAGKGMIAMQTSERN 779

Query: 748 GKFLSS 753
           GK + +
Sbjct: 780 GKVVGA 785



 Score = 94.1 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 112/371 (30%), Gaps = 23/371 (6%)

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  +++E L    +         +Q+  R + I   +      +              
Sbjct: 495 TRLMEVIREELEEIEKNYGDERRTDIQSSKRDLTIEDLITEEDRVVTISHGGYAKTQALS 554

Query: 415 PVMVSRFSLTENQVDAILNLRLR---SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                R   T     ++ +        +    +  +       +   +     L   + +
Sbjct: 555 DYQAQRRGGTGKAATSVKDEDFVEHLLIASTHDTILCFTNAGKVYWLKVFQIPLAGRQSR 614

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I   +           D   R T+   V   D+       +     TV  +      
Sbjct: 615 GRPIINLL---------PLDESERITSILPVREYDEDHFI--FMATANGTVKKTPLTQFA 663

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
             ++    L A+  +E + L           ++L S++GKA      ++ S       ++
Sbjct: 664 RPRTS--GLRAIDLEEDNHLVGTAVTDGNSDVMLFSSEGKAVRFNENDVRSMGRTSRGVR 721

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSE 647
            +      + I          K+L VS  G     +  E     R GK  + +     + 
Sbjct: 722 GIRLAEGYEVISMVLPT-EDGKVLTVSENGYGKRTKVDEYATKGRAGKGMIAMQTSERNG 780

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKI 705
           + +  V    GD + ++ +   ++   +D++    R  +GVR+   KDG  +  V   + 
Sbjct: 781 KVVGAVQVFDGDEIMLISDQGTMVRTHVDEVSVSGRNTQGVRVIKVKDGEHLMGVERIES 840

Query: 706 CEGLTWIDSAG 716
                 +D+A 
Sbjct: 841 IADDEIVDTAE 851


>gi|85059560|ref|YP_455262.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans']
 gi|84780080|dbj|BAE74857.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans']
          Length = 886

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G
Sbjct: 1   MSD----LAREITPVNIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLEKETVDYVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ EI +  LA ID+  IS+E L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLAEIIDGCLAYIDDENISVEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARAEVETDGKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISGLRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++PL  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKILPLKDILSAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR E  P           
Sbjct: 355 VRHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRQEPTPAEAKAALVARS 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WALGTVSAMLDRAGDDAARPEWLEPEYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L +       I  E+  +KE ++          T         
Sbjct: 475 LDEYKELLTQIAELIRILQNPDCLMEVIREELVAIKEQYNDPRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D ILL S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAASIKEEDFIDRLLVANTHDTILLFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRMYWMKVYQLPEASRGARGRPIVNLLPLESNERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                  E       G   + ++  +++  V    G + V +     K++ F  +Q+  M
Sbjct: 655 VKKTSLIEFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAYGKVVRFPENQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +  +G     +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLAEGDRVVSLIVPRGEGP-ILTVTQHGYGKRTAQAEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G+ + +
Sbjct: 774 IKVSERNGEVVGA 786


>gi|134295072|ref|YP_001118807.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4]
 gi|134138229|gb|ABO53972.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4]
          Length = 867

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/789 (31%), Positives = 377/789 (47%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +++P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L++NP  +I++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLNNPGATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE I II+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIAKQGLMERSWDSSLVREMLARA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGRAAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 REVMAQIADLLDILARPERITTMIGEELTSVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFVFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  +  K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  T + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 788 ERNGKVVAA 796



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDDGDFLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 738 GQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|121602784|ref|YP_989154.1| DNA topoisomerase IV subunit A [Bartonella bacilliformis KC583]
 gi|120614961|gb|ABM45562.1| DNA topoisomerase IV, A subunit [Bartonella bacilliformis KC583]
          Length = 745

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/745 (60%), Positives = 595/745 (79%), Gaps = 2/745 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   + EE+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRIIHAM  + 
Sbjct: 1   MSD--KIDEEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLK 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L+   ++ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDGD+
Sbjct: 59  LNPAQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLIDGQGNFGNIDGDN 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+VAEL+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+SGIAV
Sbjct: 119 AAAMRYTEARMTEVAELLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HNV E+C+AAL LI + + S E L ++++GPDFPTGGI+VE ++SI E+YR 
Sbjct: 179 GMATSIPPHNVAELCDAALHLIAHSDASHEDLNQFVLGPDFPTGGILVEPKKSIEEAYRT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FR+R+RW  E   R S+ IV+TEIPYQ+QKSRL+EK AEL++A+R+P+LEDI+DES
Sbjct: 239 GRGSFRLRSRWHQETGNRNSYVIVITEIPYQIQKSRLVEKTAELLLARRLPMLEDIQDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVRIVL PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+ P V+ L   L++WL
Sbjct: 299 AEDVRIVLTPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLTLGKTPNVLSLRESLQQWL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HR+EVL RRS+ R+  I+ R+EIL G LIAYLN+D++I IIR ED+PK  +++ F LTE
Sbjct: 359 EHRQEVLIRRSNHRLGQINSRLEILHGYLIAYLNLDKVIQIIREEDEPKKELLTHFQLTE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           NQ +AILN+RLRSLRKLEE++I+ E +NL AE+EK+ +LL S  +QW  I+ EI++V++ 
Sbjct: 419 NQAEAILNMRLRSLRKLEEFEIRKEFENLKAEEEKLQALLGSNVKQWQMISEEIKKVRKK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+  T LG+RRTTF +  + D   + QAMIEKEP+T+VIS +GW+R+LK H  D  AL F
Sbjct: 479 FAPETSLGKRRTTFEDSPKRDVDDIYQAMIEKEPVTIVISEKGWMRALKGHLNDYKALSF 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           KEGD LK+A  A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D+++  DI+TA
Sbjct: 539 KEGDCLKLAFPAFTTDKIVVVSTGGKFFTIGANTLPGGRGHGEPIRILVDMDNEHDILTA 598

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+++  KLL+VSS GN FI+ E+E+IANTRKGK  + V S +K+KL + V GDH+AV+G
Sbjct: 599 FVHNAQGKLLLVSSYGNGFIISETEVIANTRKGKQIMNVKSPDKVKLCIPVKGDHIAVIG 658

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRK+LIF I+QIPE+SRGKGVRLQ YKDG + D   F + EGL+W D+A RS+NR  ++
Sbjct: 659 ENRKMLIFPIEQIPEISRGKGVRLQRYKDGVVVDAKTFNLSEGLSWQDTAERSFNRQADE 718

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L+ W+G R G G L+P+GFP+SGKF
Sbjct: 719 LIEWMGTRAGAGRLLPRGFPKSGKF 743


>gi|15641271|ref|NP_230903.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121590733|ref|ZP_01678064.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80]
 gi|121729795|ref|ZP_01682231.1| DNA gyrase, subunit A [Vibrio cholerae V52]
 gi|147673690|ref|YP_001216823.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|227081430|ref|YP_002809981.1| DNA gyrase, subunit A [Vibrio cholerae M66-2]
 gi|229505155|ref|ZP_04394665.1| DNA gyrase subunit A [Vibrio cholerae BX 330286]
 gi|229518292|ref|ZP_04407736.1| DNA gyrase subunit A [Vibrio cholerae RC9]
 gi|229525857|ref|ZP_04415262.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229608175|ref|YP_002878823.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236]
 gi|254848382|ref|ZP_05237732.1| DNA gyrase [Vibrio cholerae MO10]
 gi|262159069|ref|ZP_06030181.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1]
 gi|262169427|ref|ZP_06037119.1| DNA gyrase subunit A [Vibrio cholerae RC27]
 gi|9655742|gb|AAF94417.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547414|gb|EAX57525.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80]
 gi|121628470|gb|EAX60960.1| DNA gyrase, subunit A [Vibrio cholerae V52]
 gi|146315573|gb|ABQ20112.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|227009318|gb|ACP05530.1| DNA gyrase, subunit A [Vibrio cholerae M66-2]
 gi|227013175|gb|ACP09385.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|229339438|gb|EEO04455.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229345007|gb|EEO09981.1| DNA gyrase subunit A [Vibrio cholerae RC9]
 gi|229357378|gb|EEO22295.1| DNA gyrase subunit A [Vibrio cholerae BX 330286]
 gi|229370830|gb|ACQ61253.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236]
 gi|254844087|gb|EET22501.1| DNA gyrase [Vibrio cholerae MO10]
 gi|262022240|gb|EEY40949.1| DNA gyrase subunit A [Vibrio cholerae RC27]
 gi|262029254|gb|EEY47906.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1]
          Length = 894

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/817 (32%), Positives = 399/817 (48%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E   +  +L S ++    I  E+  ++  FS +        T         A
Sbjct: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   L +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVV 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     EG   +    
Sbjct: 715 DENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +  +        RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810


>gi|15602706|ref|NP_245778.1| DNA gyrase subunit A [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|12721149|gb|AAK02925.1| GyrA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 899

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/821 (31%), Positives = 404/821 (49%), Gaps = 74/821 (9%)

Query: 5   NISNS-NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++     + +++  +S+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E
Sbjct: 6   SMTDLVQDTMHQDISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHE 65

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G  +   ++KSARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 66  GGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSIDG 125

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGI
Sbjct: 126 DAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGI 185

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  LA I+N EISI++L+ YI GPDFPT   ++  R+ I E+Y
Sbjct: 186 AVGMATNIPPHNLGEVLDGCLAYIENNEISIDELMTYIPGPDFPTAA-LINGRKGIEEAY 244

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG   VRA+  VE   +G   IVV EIPYQV K++LIEKIA+L+  K++  +  I D
Sbjct: 245 KTGRGKIYVRAKAEVETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKVEGISAITD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            S +D   +     R    ++++ +++ L+ ++  F +N+  L     P+++ L  +++ 
Sbjct: 305 LSDKDGMRIEIKIKRDAVGEVVLNNLYALTQLQVTFGINIVALDK-GQPKLLNLKQLIEA 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------ 411
           ++ HRREV+ RR+ + ++    R  IL+GL IA  N+D II +IRN              
Sbjct: 364 FVLHRREVVTRRTVYELRKARERAHILEGLAIALANVDPIIELIRNAPNPESAKRALLAQ 423

Query: 412 -------------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
                                    +   +    + LTE Q  AIL+LRL+ L  L   +
Sbjct: 424 AWELGHVSQMLAATGVDAARPEDLEEQYGIRDGMYYLTEVQAQAILDLRLQKLTNLGHDE 483

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I  E   LL    ++  +L S ++    I  E+ +++E F+         ++        
Sbjct: 484 ILDEYKKLLDVIGELLHILRSPERLMEVIREELEQIREQFNDPRRTEITASSADINLEDL 543

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
            A     +       V         + +      SA   KE D ++  L A+T D IL  
Sbjct: 544 IAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILCF 603

Query: 567 STDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           S+ G+ Y L    L        G  I  ++ L+ N+ I        Y+    +++ ++ G
Sbjct: 604 SSRGRLYWLKVYQLPQASRGARGRPIVNILPLDENERITAILPVTAYEEDKFVVMATAGG 663

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE 680
               +  +E       G   L +  E+++  V    G + + +     +++ FS + +  
Sbjct: 664 IVKKIALTEFSRPRSTGIIALNLRDEDELIGVDITDGQNEIMLFSAQGRVVRFSENAVRA 723

Query: 681 MSRGK-GVRLQSYK--------------------------DGGISDVICFKICEGL-TWI 712
           M R   GVR                               D  I  V+   I +     +
Sbjct: 724 MGRAATGVRGIKLALTNDLSDDESAVDMEEISDENTNDALDLNIDKVVSLVIPKNEGAIL 783

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    Y +           R   G +  K   R+GK +++
Sbjct: 784 TATQNGYGKRTELAEYPTKSRNTKGVISIKVSERNGKVVAA 824



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  +  +   +L  +  G     E +E    +R  K  + +       K+    
Sbjct: 766 NIDKVVSLVIPKNEGAILTATQNGYGKRTELAEYPTKSRNTKGVISIKVSERNGKVVAAT 825

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
           +V   D + ++ +   L+   +++I  + R  +GVRL  
Sbjct: 826 QVEESDQIMLITDAGTLVRTRVNEINIIGRNTQGVRLIR 864


>gi|326800751|ref|YP_004318570.1| DNA gyrase subunit alpha [Sphingobacterium sp. 21]
 gi|326551515|gb|ADZ79900.1| DNA gyrase, A subunit [Sphingobacterium sp. 21]
          Length = 862

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/770 (29%), Positives = 394/770 (51%), Gaps = 21/770 (2%)

Query: 1   MGVDNISNSN-TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  +  ++ N     + +  +S+   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++
Sbjct: 1   MADETENDDNLVPANDRIIPISIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            M ++G+  G  +KKSARIVG+V+GK HPHGD SVYD++VR+AQ +  RYPL+ GQGNFG
Sbjct: 61  GMLDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDTMVRMAQEWSLRYPLVDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGDS AA RYTEAR+ ++AE +L  +++D +D++  +++   EP V P+K PNLL NG
Sbjct: 121 SIDGDSPAAMRYTEARLKRIAEEMLADINKDTIDYQLNFDDSLQEPTVLPTKIPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            SGIAVGMAT++  HN+ E+ +  +A IDN +I++ +L+++I  PDFPTGG ++     +
Sbjct: 181 ASGIAVGMATNMAPHNLSEVIDGTVAYIDNRDITVAELMQHIKAPDFPTGG-VIYGYAGV 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            +++  GRG   +RA+  +E        I+VTEIPYQV K+ +I++ A+L+  K+I  + 
Sbjct: 240 QDAFETGRGRVVMRAKAEIEVSKNDKETIIVTEIPYQVNKAEMIKRTADLVNEKKIEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            IRDES  D   +++   R  +  +++ ++F  + ++T F +N   L     P ++ L  
Sbjct: 300 AIRDESDRDGMRIVYDIKRDANASIVLNNLFKYTALQTSFSVNNIALVH-GRPMLLNLKD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-- 417
           ++  ++ HR EV+ RR+ F +   ++R  IL+GLLIA  ++DE+I +IR+ + P+     
Sbjct: 359 MIHHFVEHRHEVIIRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSETPEDARVG 418

Query: 418 -VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            + +F L++ Q  AIL++ LR L  LE  +IK E   L+   E + S+L     +   I 
Sbjct: 419 LMEKFGLSDIQARAILDMTLRRLTGLERDKIKEEYAELMKTIEYLKSVLADEGLRMKIIK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ EVKE F          +             +  +       V  +     R     
Sbjct: 479 DELLEVKEKFGDERRSQIVHSAEDMRMEDFIDDEEIVITISHEGYVKRTPLTEYRLQARG 538

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI 594
                    KE D  +  + A   + +L  +  G+ + L A  +        G AIQ +I
Sbjct: 539 GKGSLGSTTKEEDFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGTRTSRGRAIQNII 598

Query: 595 DLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           ++   + I                   +++ +  G                G   + ++ 
Sbjct: 599 NIPKEEKIKAYIKVKNLKDQDYLENNFIIMCTKGGTIKKTSLEAYSRPRANGINAININE 658

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVIC 702
            +++       G+  + +  ++ + + F+   +  M R   GVR  +    D  +  +I 
Sbjct: 659 GDQLLEACLTNGNSEIVMALKSGRAIRFNESTVRPMGRTATGVRGVTLAGPDDEVVGMIS 718

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  T +  + + Y +  +     +  RGG G        ++G  ++
Sbjct: 719 VNTND-ATILVVSEKGYGKRTDIDDYRVTNRGGKGVKTLNVTEKTGLLVA 767



 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 76/200 (38%), Gaps = 6/200 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            I         +  +  ++A++  EGD L  A   +    I++    G+A       +  
Sbjct: 634 TIKKTSLEAYSRPRANGINAININEGDQLLEACLTNGNSEIVMALKSGRAIRFNESTVRP 693

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                  ++ +     + ++V     + +   +LVVS KG     +  +     R GK  
Sbjct: 694 MGRTATGVRGVTLAGPDDEVVGMISVNTNDATILVVSEKGYGKRTDIDDYRVTNRGGKGV 753

Query: 642 --LKVSSEEKMKLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
             L V+ +  + + +K     D + ++  +  ++  ++ Q+  M R  +GVRL + K+  
Sbjct: 754 KTLNVTEKTGLLVAIKDVTDNDDLMIINRSGIVIRIAVSQLRVMGRATQGVRLINLKEND 813

Query: 697 ISDVICFKICEGLTWIDSAG 716
               I     + +  +D   
Sbjct: 814 QIASITKVDHDEVEGLDVTE 833


>gi|254291709|ref|ZP_04962496.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226]
 gi|150422393|gb|EDN14353.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226]
          Length = 894

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/817 (32%), Positives = 400/817 (48%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYLLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E   +  +L S ++    I  E+  ++  FS +        T         A
Sbjct: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   L +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVV 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     EG   +    
Sbjct: 715 DENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +  +        RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810


>gi|120611936|ref|YP_971614.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1]
 gi|120590400|gb|ABM33840.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1]
          Length = 886

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/808 (30%), Positives = 395/808 (48%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L ++ +P+ ++++++E I  PDFPT G I+     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHVLRHPDATVDEIMEIIPAPDFPTAG-IIYGINGVKEGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRARCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L     P++  L  ++  +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVD-GQPRLCNLRDLIVVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------------ 411
           EV+ RR+ F ++    R  +L+GL +A  NIDE I IIR                     
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQL 419

Query: 412 ---------------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                      +        + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  +++A  E +  +L   ++    I  E+  +K  F +   LG RRT       
Sbjct: 480 DKIVAEYKDIMAVIEDLLDILAKPERVSVIIGDELTAIKAEFGQHK-LGMRRTLV---EH 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+         R+ K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRT 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADRFVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  + R  +GVR    +DG     +     E  + + +    Y +  + 
Sbjct: 716 GGKGVRFDENDVRPLGRAARGVRGMMLEDGQSVIAMLVAEDETQSVLTATENGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      RG  G +  +   R+GK +++
Sbjct: 776 VEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 77/262 (29%), Gaps = 14/262 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G +   
Sbjct: 595 IANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMF---------PLQEGEKINV 645

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++   +       +        +               + A++  +GD L  A    
Sbjct: 646 VLPLTGDMRTFPADRFVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTD 705

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               ++L S  GK       ++         ++ ++  +    I      D T  +L  +
Sbjct: 706 GQHDVMLFSDGGKGVRFDENDVRPLGRAARGVRGMMLEDGQSVIAMLVAEDETQSVLTAT 765

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFS 674
             G        E   + R  K  + +   E+   VV  T     D + ++ +   L+   
Sbjct: 766 ENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEIMLITDKGVLVRTR 825

Query: 675 IDQIPEMSRG-KGVRLQSYKDG 695
           + +I E+ R  +GV L +  +G
Sbjct: 826 VAEIRELGRATQGVTLIALDEG 847



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 37/104 (35%), Gaps = 2/104 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
            T  +L  + +G                 + +  +     N  +V A +  +  ++++++
Sbjct: 757 ETQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEIMLIT 816

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
            KG       +EI    R   G T + +    K+  + ++  + 
Sbjct: 817 DKGVLVRTRVAEIRELGRATQGVTLIALDEGAKLSGLQRIVEND 860


>gi|317126748|ref|YP_004093030.1| DNA gyrase subunit alpha [Bacillus cellulosilyticus DSM 2522]
 gi|315471696|gb|ADU28299.1| DNA gyrase, A subunit [Bacillus cellulosilyticus DSM 2522]
          Length = 843

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/765 (31%), Positives = 419/765 (54%), Gaps = 33/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  +   +  VK +++   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G
Sbjct: 1   MSEQD---QSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD+
Sbjct: 58  MTSDKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ +++D +D+++ Y+  ++EP+V P++FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARMSKISMELVRDINKDTIDYQENYDGSETEPIVLPARFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LAL +NP I+  +L+EYI GPDFPTG  IV     I  +Y  
Sbjct: 178 GMATNIPPHNLGEVIDGVLALSENPTITSTELMEYIPGPDFPTGAEIV-GVSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   +RA+  + E   G   I+VTEIPYQV K+RLIEKIAEL+  K++  + D+RDES
Sbjct: 237 GKGSITIRAKAEI-EDNNGKPRIIVTEIPYQVNKARLIEKIAELVRDKKLDGITDLRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R ++ ++L+ +++  + +++ F +NM  L     P+V+ +  +L  +L
Sbjct: 296 DRTGMRIVIELRRDVNANVLLNNLYKQTALQSSFGINMLALVD-GRPKVLSIKEVLYHYL 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+R V+ RR+ F ++  + R  IL+GL IA  +IDEIIA+IR        +  ++  FS
Sbjct: 355 EHQRVVIRRRTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTEIARQGLMENFS 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+ +Q  AIL++RL+ L  LE  +I++E   L+ + +++ ++L   ++    I  E+ ++
Sbjct: 415 LSHDQAQAILDMRLQRLTGLERDKIEAEYQELVEKIKELKAILADDEKVLAIIREELTDI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ ++       RRT     +  + +   + +I ++ + + +S+ G+I+          K
Sbjct: 475 RDRYNDE-----RRTII---TFGEDSMEDEDLIPRQNVVITLSHNGYIKRIPLSTYRSQK 526

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++     ++ D +L  +  GK Y L    + S     +   I  
Sbjct: 527 RGGRGVQGMGTHDDDFVQHLFITNSHDHLLFFTNKGKVYRLKGYEIPSFNRTAKGIPIIN 586

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ +  ++ + T      +D    L  ++  G A            R G   + +   + 
Sbjct: 587 LLQIEKDEYVSTVIPVDEFDEERYLFFMTKDGIAKRTALKVFSNIRRGGLFAINLREGDA 646

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   +         + F  + +  M R   GV+  + ++     V    I E
Sbjct: 647 LHGVRLTDGTKEIIAGTRKGMSIRFHENDVRLMGRTATGVKGVTLQENDQV-VGMDTIEE 705

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +    + + +        +  RGG G        ++G  +S
Sbjct: 706 DQAVLIVTEKGFGKRTPVSEYRIQTRGGKGIKTCNITDKNGPLIS 750



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 109/360 (30%), Gaps = 20/360 (5%)

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-VMVSR 420
           +E +   +E+    +         R E+             II    +  + +  +    
Sbjct: 444 QELVEKIKELKAILADDEKVLAIIREELTDIRDRYNDERRTIITFGEDSMEDEDLIPRQN 503

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             +T +    I  + L + R  +      +      +       + +          + +
Sbjct: 504 VVITLSHNGYIKRIPLSTYRSQKRGGRGVQGMGTHDDDFVQHLFITNSHDHLLFFTNKGK 563

Query: 481 EVKEI-FSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
             +   +   +     +          E        +     ++E     ++  G  +  
Sbjct: 564 VYRLKGYEIPSFNRTAKGIPIINLLQIEKDEYVSTVIPVDEFDEERYLFFMTKDGIAKRT 623

Query: 534 KSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
                       L A++ +EGD+L        T  I+  +  G +      ++       
Sbjct: 624 ALKVFSNIRRGGLFAINLREGDALHGVRLTDGTKEIIAGTRKGMSIRFHENDVRLMGRTA 683

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             +   + L  N  +V     +    +L+V+ KG       SE    TR GK     +  
Sbjct: 684 TGV-KGVTLQENDQVVGMDTIEEDQAVLIVTEKGFGKRTPVSEYRIQTRGGKGIKTCNIT 742

Query: 648 EK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +K   +  +  V+ DH + ++  +  ++   +++I    R  +GVRL    D      + 
Sbjct: 743 DKNGPLISLKVVSDDHDLMIITNSGVIIRMHVEEISTTGRNTQGVRLIRVGDEEHVSTVA 802


>gi|78485535|ref|YP_391460.1| DNA gyrase, A subunit [Thiomicrospira crunogena XCL-2]
 gi|78363821|gb|ABB41786.1| DNA gyrase subunit A [Thiomicrospira crunogena XCL-2]
          Length = 871

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/782 (32%), Positives = 400/782 (51%), Gaps = 50/782 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  +SL   +++ YL+YA+S I  RA+PD+RDG KPVHRR+++AM+E+G  +   +KKS
Sbjct: 7   EILPISLEDEMQQSYLSYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNSWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS AA RYTE R
Sbjct: 67  ARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSPAAMRYTEVR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L  ++++ V+F   Y+  +SEP V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MSKIAHELLADLEKETVNFTPNYDGSESEPDVLPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E   A +ALIDNPE++I +L+E++ GPDFPT G I+   + I E+Y  GRG  ++RAR
Sbjct: 187 LNETVSACIALIDNPELTISELMEFLPGPDFPTYG-IINGTKGIREAYETGRGRVQMRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE    G   I+V EIPYQV K++LIE+IAEL+  K+I  +  +RDES +D   ++  
Sbjct: 246 TSVETDKNGKSSIIVHEIPYQVNKAKLIERIAELVKEKKIEGISALRDESDKDGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P++L+ +++  + M+T F +NM  L     P+++ L  +L+ ++ HRREV+ RR
Sbjct: 306 VKRGEVPEVLINNLYKQTTMQTVFGINMVALINS-QPKLLNLKDVLEAFIRHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------------- 420
           + + ++    +  IL+GL +A  NIDE+I +I+    P                      
Sbjct: 365 TIYDLRKAREKAHILEGLALALNNIDEMIELIKASPSPSVAKERMLERDWSIGNVEQLLE 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+  Q  AIL +RL  L  LE+ +I +E  +L+ +
Sbjct: 425 KVEMKDVRPEDLPEGFGADGSGVYKLSPAQAQAILEMRLHRLTGLEQDKIIAEYRDLVLK 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +   +L +  +    +  E++EV E F          +     +    A   + +   
Sbjct: 485 IAEFLEILRNPDRLTEVVREELQEVVENFGDKRRTEIDHSYQDIDAEDLIAVENRIVTLS 544

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               +        ++ +      SA   KE D +   + A T D +L  S  GK Y    
Sbjct: 545 RDGYIKTQPLSDYQAQRRGGRGKSATQMKEDDEIGQMIVASTHDMLLCFSNRGKLYWQKT 604

Query: 578 GNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
             L   S    G+ I  ++ L   + I +      +     + + + +     V  S+  
Sbjct: 605 WQLPLASRGSKGKPIVNVLPLETGEHITSILPVSEFSEGYYVFMATKQSTVKRVALSDFS 664

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
                G   + +  ++++       G+  + +     K + F  + +  M R  +GVR  
Sbjct: 665 RPRANGIIAVDLLDDDELVGTAITDGEQDIMLFSNIGKAIRFDENDVRVMGRQARGVRGM 724

Query: 691 SYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
             KDG    +I  ++    T  + +    Y +           RGG G +  K   R+G 
Sbjct: 725 KLKDG--MSIISMQVARKDTLILTATEHGYGKCTPVDDYSTINRGGQGVISIKTSDRNGN 782

Query: 750 FL 751
            +
Sbjct: 783 VV 784



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 88/305 (28%), Gaps = 19/305 (6%)

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +         +  Q+     +    +    +  +       L  ++     L S   +
Sbjct: 556 DYQAQRRGGRGKSATQMKEDDEIGQMIVASTHDMLLCFSNRGKLYWQKTWQLPLASRGSK 615

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I   +           + G   T+   VS   +       +  +  TV         
Sbjct: 616 GKPIVNVL---------PLETGEHITSILPVSEFSEGYYV--FMATKQSTVKRVALSDFS 664

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
             +++   + A+   + D L           I+L S  GKA      ++         ++
Sbjct: 665 RPRAN--GIIAVDLLDDDELVGTAITDGEQDIMLFSNIGKAIRFDENDVRVMGRQARGVR 722

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-- 649
            +  L     I++  V      +L  +  G        +     R G+  + + + ++  
Sbjct: 723 GM-KLKDGMSIISMQVARKDTLILTATEHGYGKCTPVDDYSTINRGGQGVISIKTSDRNG 781

Query: 650 --MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             +  V       V ++     L+   + +I  + R  +GV+L +   G I   +     
Sbjct: 782 NVVYSVAVTPDQEVVLITNKGTLVRTRVSEISVVGRNTQGVKLINVGKGEIVVGLAVVDV 841

Query: 707 EGLTW 711
           +    
Sbjct: 842 QEDEL 846


>gi|264677567|ref|YP_003277473.1| DNA gyrase subunit alpha [Comamonas testosteroni CNB-2]
 gi|262208079|gb|ACY32177.1| DNA gyrase, A subunit [Comamonas testosteroni CNB-2]
          Length = 898

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/817 (30%), Positives = 397/817 (48%), Gaps = 80/817 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP+V PS+ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDFGPNYDGSEQEPLVLPSRLPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L L+ NPE SI++L+E I  PDFPT G I+     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDGCLHLLQNPEASIDELMEIIPAPDFPTAG-IIYGINGVKEGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++ L+ ++  F +NM  L     P++  L  +++ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALV-NGQPKLCNLKDLIQVFLEHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------------ 411
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAIIRN                    
Sbjct: 360 EVVTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKL 419

Query: 412 ---------------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                      +        + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRTDGGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  ++++  E +  +L   ++    I  E+  VK  F +S    RR T       
Sbjct: 480 DKIVAEYKDVMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVE----Y 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+         RS K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D +L  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 596 ANTHDYLLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMFPLQEGEKINVVLPLTGENRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           +     + + +S G       +E     + G   + +   + +       G H V +  +
Sbjct: 656 FPEDHFVFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT---------WIDSAG 716
             K + F  + +  M R  +GVR  + ++      +     +  T          + +  
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMNIEEHQNVIAMLVAEADDGTGNVVAGSQSVLTATE 775

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +           RG  G +  +   R+GK +++
Sbjct: 776 NGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAA 812



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 86/272 (31%), Gaps = 25/272 (9%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       +   +  +    S   +   I                 G +   
Sbjct: 595 IANTHDYLLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMF---------PLQEGEKINV 645

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++  +++  +   +        +               + A+   EGD L  A    
Sbjct: 646 VLPLTGENRSFPEDHFVFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTD 705

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST------- 611
               ++L S  GKA      ++     +   ++ + ++  +Q+++   V ++        
Sbjct: 706 GKHDVMLFSDGGKAVRFDENDVRPMGRNARGVRGM-NIEEHQNVIAMLVAEADDGTGNVV 764

Query: 612 ---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVV 664
                +L  +  G       SE   + R  K  + +     + + +   +    D + ++
Sbjct: 765 AGSQSVLTATENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAATLVAPEDEIMLI 824

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            +   L+   + +I E+ R  +GV L +  +G
Sbjct: 825 TDTGVLVRTRVAEIRELGRATQGVTLINLDEG 856



 Score = 42.5 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 59/229 (25%), Gaps = 8/229 (3%)

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L L    +         +   +   +K      S  ++   IA  + E   +   +   G
Sbjct: 647 LPLTGENRSFPEDHFVFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDG 706

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           +                +  +           N   +R +                    
Sbjct: 707 KHDVMLFSDGGKAVRFDENDVRPMGR------NARGVRGMNIEEHQNVIAMLVAEADDGT 760

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 +  +L  + +G                 + +  +     N  +V A +     +
Sbjct: 761 GNVVAGSQSVLTATENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAATLVAPEDE 820

Query: 614 LLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
           +++++  G       +EI    R   G T + +    K+  + ++  + 
Sbjct: 821 IMLITDTGVLVRTRVAEIRELGRATQGVTLINLDEGAKLIGLQRIVEND 869


>gi|325981795|ref|YP_004294197.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212]
 gi|325531314|gb|ADZ26035.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212]
          Length = 852

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/790 (31%), Positives = 394/790 (49%), Gaps = 65/790 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGD+AAA RYTE RM++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDNAAAMRYTEIRMSR 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y++ + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLVDLDKETVDFGPNYDDSEKEPLILPAKIPNLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + EA LAL+ N  ISI++L++ I  PDFPT G I+     + + YR GRG   +RAR   
Sbjct: 190 VVEACLALLKNSNISIDELIDLIPAPDFPTAG-IIYGVNGVRDGYRTGRGRVVMRARTHF 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++       I++ E+PYQV K+ L+ +I EL+  K+I  + D+RDES +    V+    
Sbjct: 249 EDLEKGNRQSIIIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + M+  F +NM  L     P+++ L  IL  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVILNNLYKETQMQDTFGMNMVALLD-GQPRLLNLKQILDAFLRHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-------------------------- 411
           F ++    R  +L+GL +A  N+DEIIA+I+                             
Sbjct: 368 FELKKARERGHLLEGLAVALSNVDEIIALIKAAPTPADAKEALMAKAWHSQLVEEMLTRA 427

Query: 412 -------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                            +    + L++ Q  AIL LRL+ L  LE+ +I +E  +++ + 
Sbjct: 428 MADANALRPEGLDDMFGLKAQGYHLSDAQAQAILELRLQRLTGLEQEKIVAEYKDVIEKI 487

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L + ++    I  E+  +K  F        RR+         +    + +I   
Sbjct: 488 IDYLDILANPERITQIITEELDAIKLQFGDE-----RRSEIV---VDTQDLSMEDLITPA 539

Query: 519 PITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+         R+ K       A   KE D +     A+T D IL  S+ G
Sbjct: 540 DVVVTLSHTGYIKSQLLDDYRAQKRGGRGKLATSTKEDDFIDKLFIANTHDYILCFSSLG 599

Query: 571 KAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    +     +  G+ I   + L   + I        +D    + + +S G    
Sbjct: 600 RVYWIKVYEVPQGGRQSRGKPIINWVQLEEGEKINAILPVKTFDENRFVFMATSFGTVKK 659

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
              SE       G   + +   + +  V    G H V +  +N K + FS + +  M R 
Sbjct: 660 TPLSEFSRPRNNGIIAIGLDEGDFLIGVELTEGKHDVMLFSDNGKAMRFSENDVRPMGRT 719

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR      G     +     E L  + +    Y +           RG  G +    
Sbjct: 720 ARGVRGMKLGPGHKVISMLVAENEDLAVLTATENGYGKRTPISEYTRHNRGTQGMIAIIT 779

Query: 744 FPRSGKFLSS 753
             R+GK +++
Sbjct: 780 SARNGKVVTA 789



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 66/185 (35%), Gaps = 9/185 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  +  + A+   EGD L           ++L S +GKA      ++         ++ +
Sbjct: 667 RPRNNGIIAIGLDEGDFLIGVELTEGKHDVMLFSDNGKAMRFSENDVRPMGRTARGVRGM 726

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
                ++ I      +    +L  +  G       SE   + R        +  +   K+
Sbjct: 727 KLGPGHKVISMLVAENEDLAVLTATENGYGKRTPISEYTRHNRGTQGMIAIITSARNGKV 786

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG----GISDVICFK 704
                V   D + ++     L+   ++++ EMSR  +GV L +   G    G+  V+  +
Sbjct: 787 VTAKLVKPDDEIMLITSGGVLIRTRVNEVREMSRATQGVTLINLDAGEKLAGLERVVESE 846

Query: 705 ICEGL 709
             +G 
Sbjct: 847 DDDGD 851


>gi|192360085|ref|YP_001982590.1| DNA gyrase subunit A [Cellvibrio japonicus Ueda107]
 gi|190686250|gb|ACE83928.1| DNA gyrase, A subunit [Cellvibrio japonicus Ueda107]
          Length = 883

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/801 (32%), Positives = 419/801 (52%), Gaps = 68/801 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  VS+   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+ 
Sbjct: 1   MSD----LAKEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELN 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDN 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  ++  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMAKIAHDLMADLDKETVDFVPNYDGTEQIPAVLPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA++DNP+I+I++L+EYI GPDFPTG  I+  R  IVE+YR 
Sbjct: 177 GMATNIPPHNLGEVVRGCLAMVDNPDITIDELMEYIPGPDFPTGA-IINGRAGIVEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RA+  +E +   G   I+VTEIPYQ+ K+RLIE+IAEL+  K++  + ++RDE
Sbjct: 236 GRGRVVMRAKAEIETDAKTGRETIIVTEIPYQINKARLIERIAELVKEKKVEGISELRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    ++   D+L+ ++F  + ++T F +NM  L     P+++ L  +L+ +
Sbjct: 296 SDKDGMRIVIEVKKTESGDVLLNNLFAQTQLQTTFGVNMVALDD-GQPKLLNLKDMLEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----- 419
           + HRREV+ RR+ + ++    R  IL+GL +A  NIDE+I +I+    P     S     
Sbjct: 355 IRHRREVVTRRTVYLLRKARERGHILEGLAVAIANIDEVIELIKRSPSPAEAKESLQARG 414

Query: 420 --------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                           R+ L+  Q  AIL+LRL  L  +E  ++
Sbjct: 415 WAADSVLPFLERAGDNACRPEDLEGNYGVIDGRYYLSAAQAQAILDLRLHRLTGMEHDKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
            +E D+ + E  +   +L +  +    I  E+ +V   F  +     RRT       +  
Sbjct: 475 LAEYDDKIKEIAEYLEILGNAIRLMEVIRAELEQVIADFGDA-----RRTEII---ASSL 526

Query: 508 ATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I  E   V IS+ G+         ++ +   +  SA   K+ D ++  L A T
Sbjct: 527 DLTTEDLIAVEDRVVTISHGGYAKSQPLADYQAQRRGGMGKSATAVKDEDFVEHLLIAST 586

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  ++ GK Y+L    +     +  G  +  L+ L   + I +      YD+   +
Sbjct: 587 HDTILCFTSVGKVYSLKVYMIPEAGRQSRGRPVVNLLPLEEGERITSILPVKSYDNDHFI 646

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIF 673
            + + KG       +E  +    GK  +++   + +       G   V +   + K   F
Sbjct: 647 FMATRKGTVKKTVLTEFQSLRANGKRAIELDEGDTLVGTAVTNGACDVILFSSSGKAARF 706

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
              Q+  M R  +GVR     +G     +   +  G   +  +   Y +           
Sbjct: 707 RESQVRAMGRSSRGVRGIRIAEGQFIVGMVIPLA-GGQVLTVSENGYGKRTPVDEFPAKG 765

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           RG  G +  +   R+G+ + +
Sbjct: 766 RGSQGVIGMQTTDRNGELVGA 786



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 10/218 (4%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             + G R T+   V   D          K  +   +                        
Sbjct: 624 PLEEGERITSILPVKSYDNDHFIFMATRKGTVKKTVLTEFQSLRANGKRAIELDEGDTLV 683

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
            +            ++L S+ GKA       + +       ++  I +   Q IV   + 
Sbjct: 684 GTAVTNGACD----VILFSSSGKAARFRESQVRAMGRSSRGVRG-IRIAEGQFIVGMVIP 738

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVV 664
            +  ++L VS  G        E  A  R  +  + +     + E +  V    G+ + ++
Sbjct: 739 LAGGQVLTVSENGYGKRTPVDEFPAKGRGSQGVIGMQTTDRNGELVGAVQVFDGEEIMLI 798

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            +   ++   +D++  +SR  +GVRL   KDG     I
Sbjct: 799 SDQGTMVRTRVDEVSLLSRNTQGVRLIKLKDGERMQGI 836



 Score = 46.7 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 53/135 (39%), Gaps = 2/135 (1%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
               +R++   S  +  +   EG  +   +      ++L +S +G     P     +   
Sbjct: 707 RESQVRAMGRSSRGVRGIRIAEGQFIVGMVIPLAGGQVLTVSENGYGKRTPVDEFPAKGR 766

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGKTFLK 643
             + +  +   + N ++V A       +++++S +G        E  +++   +G   +K
Sbjct: 767 GSQGVIGMQTTDRNGELVGAVQVFDGEEIMLISDQGTMVRTRVDEVSLLSRNTQGVRLIK 826

Query: 644 VSSEEKMKLVVKVTG 658
           +   E+M+ + ++  
Sbjct: 827 LKDGERMQGIERIEE 841


>gi|153829746|ref|ZP_01982413.1| DNA gyrase, A subunit [Vibrio cholerae 623-39]
 gi|148874780|gb|EDL72915.1| DNA gyrase, A subunit [Vibrio cholerae 623-39]
          Length = 848

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/817 (32%), Positives = 400/817 (48%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E   +  +L S ++    I  E+  ++  FS +        T         A
Sbjct: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   L +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVV 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     EG   +    
Sbjct: 715 DENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +  +        RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 5/117 (4%)

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
              +   G   A    + L     +V+  V  +   +L V+  G       SE     R 
Sbjct: 732 FKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRG 791

Query: 638 --GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
             G   +KVS      +  V    GD   ++     L+   + ++ ++ R  +GV L
Sbjct: 792 TQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTL 848


>gi|292488816|ref|YP_003531703.1| DNA gyrase subunit A [Erwinia amylovora CFBP1430]
 gi|292899967|ref|YP_003539336.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946]
 gi|291199815|emb|CBJ46938.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946]
 gi|291554250|emb|CBA21544.1| DNA gyrase, A subunit [Erwinia amylovora CFBP1430]
 gi|312172974|emb|CBX81229.1| DNA gyrase, A subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 878

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/793 (32%), Positives = 396/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA I +  I++E L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNITEVINGCLAYIADENITVEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARGEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++T F +NM  L     P++MPL  IL+ +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKIMPLKDILEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P           
Sbjct: 355 VRHRREVITRRTIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVSAMLERAGDNAARPEWLEEQYGIHNGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E  +LLA+  ++  +L S ++    I  E+  +++ F           T         
Sbjct: 475 LDEYKDLLAQIAELLRILASSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y     + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWNIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 ++       G   + +  ++++  V    G D   +     K++ F+   +  M
Sbjct: 655 VKKTALTDFSRPRSAGIIAVNLRDDDELIGVSLTNGSDEAMLFSAAGKVVRFAESAVRTM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +G     +     +G   +      Y +   ++      R   G + 
Sbjct: 715 GRTASGVRGIKLAEGDRVVSLIVPRDDGA-IMTVTQNGYGKRTANVEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGPVIGA 786


>gi|209695246|ref|YP_002263175.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238]
 gi|208009198|emb|CAQ79452.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238]
          Length = 885

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/802 (32%), Positives = 409/802 (50%), Gaps = 65/802 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +  ++ +  + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM  
Sbjct: 1   MRDIGSMSDLAKGITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDV 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 61  LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P++ PNLL NG+SGI
Sbjct: 121 DSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTRVPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+    LA I+N +I+I++L+ YI GPDFPT   ++  R+ IV++Y
Sbjct: 181 AVGMATNIPPHNLTEVVNGCLAFIENEDITIDELINYIPGPDFPTAA-LISGRKGIVDAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG   +R++  +E    G   I+VTEIPYQV K+R+IEKIAEL+  K++  +  +RD
Sbjct: 240 KTGRGKVYMRSKANIEADKNGKETIIVTEIPYQVNKARVIEKIAELVKDKKVEGISALRD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES +D   ++    R    ++++ ++F L+ ++T F +NM  L     P++  L  +LK 
Sbjct: 300 ESDKDGMRIVIECKRDAVGEVVLNNLFSLTQLQTTFGVNMVALD-NGQPKLFNLKEMLKC 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------- 415
           ++ HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +I+N   P          
Sbjct: 359 FVDHRREVVTRRTIFELRKARDRAHILEGLALALANIDEIIDLIKNAPSPAEAKQGLVAR 418

Query: 416 -----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
                                        +   ++ LTE Q  AIL LRL  L  LE  +
Sbjct: 419 GWDLGNVADMLERAGTDAARPDWLEPEFGIREGQYFLTEQQAQAILELRLHRLTGLEHEK 478

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I  E   LL E  ++  +L S ++    I  E+  V++ +        RRT   E+  A 
Sbjct: 479 ILDEYKALLDEIAELMHILASTERLMEIIRDELITVRDTYGDE-----RRT---EIGAAI 530

Query: 507 KATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAH 558
                + +I +E + V +S  G+          + +      SA   K+ D ++  L A+
Sbjct: 531 HDIDIEDLITQEDVVVTLSREGYVKYQILGDYEAQRRGGKGKSATKMKDTDYIERLLVAN 590

Query: 559 TTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCK 613
           T D IL  ST GKAY+L    L        G+ I  ++ L   + I        Y     
Sbjct: 591 THDNILCFSTRGKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKF 650

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLI 672
           + + +  G        +       G   + +  ++ +  V   TG + + +  +  K++ 
Sbjct: 651 IFMATGDGTVKKTSLDQFAKVRANGLIAVNLREDDSLIGVDITTGSNEIMLFSKAGKVVR 710

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           FS + +  M R   GVR            +     EG   +      Y +          
Sbjct: 711 FSEEHVRGMGRTASGVRGMKLTGEDQVVSLIVPSNEGD-ILTVTENGYGKRTKISEYPTK 769

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            R   G +  K   R+G  + +
Sbjct: 770 SRATQGVVSIKVSDRNGSVVGA 791


>gi|77460299|ref|YP_349806.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1]
 gi|77384302|gb|ABA75815.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1]
          Length = 887

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/795 (32%), Positives = 412/795 (51%), Gaps = 65/795 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G DF   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTELIPAVMPTRVPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE+++++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESTAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++ +E   
Sbjct: 422 VAMVERAGADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +LNS  +    I  E+  ++  +        RRT   +   A        
Sbjct: 482 ILNQIGELIRILNSAVRLMEVIREELEVIRAEYGD-----VRRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           MI +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +LL
Sbjct: 534 MIPEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSK 620
            S+ GK Y L    +        G  +  L+ L+  + I T    +       + + ++ 
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLDDGEYITTMLPVEEYTEGHYIFMATAN 653

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G                G   L++   + +       G+  V +  +  K+  F    + 
Sbjct: 654 GTVKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVR 713

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR     +G     +     EG   + ++ R Y +          KRGG G 
Sbjct: 714 AMGRTARGVRGMRLPEGQKLISMLI-PEEGSQILTASERGYGKRTAITEFPEYKRGGQGV 772

Query: 739 LVPKGFPRSGKFLSS 753
           +      R+G+ + +
Sbjct: 773 IAMVSNERNGRLVGA 787


>gi|23097462|ref|NP_690928.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831]
 gi|22775685|dbj|BAC11963.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831]
          Length = 837

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/766 (32%), Positives = 418/766 (54%), Gaps = 32/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ N      V  +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MADINRP---RVSEINISNEMRTSFLDYAMSVIVARALPDVRDGMKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MHSDKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQTFSYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +L+ +++D +D++D Y+  + EPVVFP++FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARMSKISMELLRDINKDTIDYQDNYDGTEREPVVFPARFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYR 244
           GMAT+IP H++ E  +A LA+  NP+I+I++++  ++ GPDFPT G I+  R  I ++Y 
Sbjct: 178 GMATNIPPHHLGETIDAVLAISQNPDITIDEIMENHLPGPDFPTAGQIL-GRSGIRKAYE 236

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   +RA+  +E+       I+VTE+PYQV K++LIEKIAEL+  K++  + D+RDE
Sbjct: 237 TGKGSITIRAKLNIEQGKNDKETIIVTELPYQVNKAKLIEKIAELVRDKKVEGITDLRDE 296

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R  + ++++ +++  + ++T F +NM  L     P+V+ +   L  +
Sbjct: 297 SDRNGMRIVIELRRDANANVVLNNLYKHTSLQTTFGINMLALVD-GQPRVLNIKQCLSYY 355

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           L H++ ++ RR+ F +   + R  IL+GL IA  ++DE+I +IR+       +  ++ RF
Sbjct: 356 LEHQKVIIKRRTQFELNKAEARAHILEGLRIALDHLDEVIELIRSSKTADIAREGLMERF 415

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q  AIL++RL+ L  LE  +I+ E   L A  E++ ++L   ++    I  E+ E
Sbjct: 416 KLSEKQAQAILDMRLQRLTGLEREKIEDEYKELQALIEELKAILADEEKVLEIIREELTE 475

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           +KE +        RRT     +        + +I +E I + ++++G+I+          
Sbjct: 476 IKEKY-----KEDRRTEIV--AGGAGFFEDEDLIPEENIVITLTHQGYIKRLPASTYRTQ 528

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
           K     +  +   E D ++  +   T D IL  +  GK Y      +       +   I 
Sbjct: 529 KRGGRGIQGMGTNEDDFVEHLVSTSTHDTILFFTNKGKVYKAKGYEIPEFSRTAKGIPII 588

Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+ +   + +        +D    L   +  G A      +     + G   + +  E+
Sbjct: 589 NLLQVEKGEWVNAVISVNQFDEEAYLFFTTKHGIAKRTSLEKFRNIRKGGLIAVGLREED 648

Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  V    G   + +  +N  L+ F   QI  M R   GV+  S +   +   +   I 
Sbjct: 649 ELISVRLTDGQKEMMIATKNGYLIRFEETQIRSMGRTAAGVKGISLRGDDVVVSMEI-IE 707

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            G   +    + + +  ++       RGG G    K   ++G  ++
Sbjct: 708 PGSKILHVTNKGFGKQTDESEYRRINRGGKGVFTCKLDEKTGNVVA 753



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 5/119 (4%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           A    I L  +  +V+  + +   K+L V++KG     +ESE     R GK       +E
Sbjct: 687 AGVKGISLRGDDVVVSMEIIEPGSKILHVTNKGFGKQTDESEYRRINRGGKGVFTCKLDE 746

Query: 649 K---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           K   +  V  V GD  + ++     L+   +  I +  R  KGV L   +DG     + 
Sbjct: 747 KTGNVVAVKAVNGDEDLMLITIAGVLIRIQVQDISQTGRNTKGVHLIRLQDGEEVATVT 805


>gi|332527566|ref|ZP_08403613.1| DNA gyrase subunit A [Rubrivivax benzoatilyticus JA2]
 gi|332111969|gb|EGJ11946.1| DNA gyrase subunit A [Rubrivivax benzoatilyticus JA2]
          Length = 894

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/806 (29%), Positives = 381/806 (47%), Gaps = 73/806 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+   +   +KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNHWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L+ +D++ VDF   Y+  + EP V P++ PNLL NG++GIAVGMAT+IP HN+ E
Sbjct: 130 IAHEMLEDIDKETVDFAPNYDGSEKEPTVLPARLPNLLVNGSAGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I +A L L+  PE +IE+L+E +  PDFPT G I+   E + E YR GRG   +RA+   
Sbjct: 190 IVDACLHLLKVPEATIEELMEIVPAPDFPTAG-IIYGLEGVREGYRTGRGRVVMRAKCHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V EIPYQV K  L+E+IAEL+  K+I  +  I+DES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDEIPYQVNKKTLLERIAELVNEKKIEGISHIQDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P++  L  +L  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKQTQLQDSFGINMVALVD-GQPRLCNLKQLLDIFLEHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------------- 415
           + ++    R  +L+GL +A  NIDE I  I+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIETIKTSPTPPVAKAALMSKAWDSSMVREMLARA 427

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E+Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 EESTAGGRAAYRPEGLPAGYGLQADGLYRLSEDQAQEILQMRLQRLTGLEQDKIIGEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF---CEVSRADKATL 510
           ++++   +  +L   ++    +  E+  +++ F ++    RR        E+   D  T 
Sbjct: 488 VMSQIADLLDILARPERVTAILVEELNALRQEFGQAKVGARRSVIERNALELGTEDLITP 547

Query: 511 QQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
              ++       + S         +       A   K+ D +     A+T D IL  S  
Sbjct: 548 TDMVVTLSHTGYIKSQPLTEYRAQRRGGRGKQATQTKDDDWIDQLFIANTHDWILCFSDR 607

Query: 570 GKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTCKLLVVSSK 620
           G+ Y L    +        G+ I  +  L   + I            + +   + + ++ 
Sbjct: 608 GRVYWLKVWEVPQGSRNSRGKPIVNMFPLQPGEKITVVLPLTGEFRSFPADHYVFMSTAL 667

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679
           G        E     + G   + +   + +       G   V +  +  K + F  D + 
Sbjct: 668 GTVKKTPLDEFSNPRKAGIIAVGLDEGDYLIGAALTDGRHDVMLFSDGGKAVRFDEDDVR 727

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL-----------TWIDSAGRSYNRSENDLL 727
            M R  +GVR  + + G     +                   + + +    + +      
Sbjct: 728 PMGRNARGVRGMALEPGQNVIAMLVSDRGDEARDVGEDSTRVSVLTATENGFGKRTPIGE 787

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLSS 753
                RG  G +  +   R+GK +++
Sbjct: 788 YTRHGRGTKGMIAIQQSERNGKVVAA 813



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 82/274 (29%), Gaps = 27/274 (9%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    ++ +       +   +  +    S   +   I                 G + T 
Sbjct: 594 IANTHDWILCFSDRGRVYWLKVWEVPQGSRNSRGKPIVNMF---------PLQPGEKITV 644

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++   ++      +        +               + A+   EGD L  A    
Sbjct: 645 VLPLTGEFRSFPADHYVFMSTALGTVKKTPLDEFSNPRKAGIIAVGLDEGDYLIGAALTD 704

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK----- 613
               ++L S  GKA      ++     +   ++ +  L   Q+++   V D   +     
Sbjct: 705 GRHDVMLFSDGGKAVRFDEDDVRPMGRNARGVRGM-ALEPGQNVIAMLVSDRGDEARDVG 763

Query: 614 -------LLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVA 662
                  +L  +  G        E   + R  K  + +     + + +   +    D + 
Sbjct: 764 EDSTRVSVLTATENGFGKRTPIGEYTRHGRGTKGMIAIQQSERNGKVVAATLVRETDEIM 823

Query: 663 VVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           ++ +   L+   + +I EM R  +GV L +  DG
Sbjct: 824 LITDRGVLVRTRVAEIREMGRATQGVTLIALDDG 857



 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G     P G         + +  +     N  +V A +   T ++++++ +G     
Sbjct: 775 TENGFGKRTPIGEYTRHGRGTKGMIAIQQSERNGKVVAATLVRETDEIMLITDRGVLVRT 834

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
             +EI    R   G T + +    K+  + ++  + 
Sbjct: 835 RVAEIREMGRATQGVTLIALDDGAKLSGLQRIVEND 870


>gi|315165722|gb|EFU09739.1| DNA gyrase, A subunit [Enterococcus faecalis TX1302]
          Length = 833

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  E+++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEEDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTAVTAFSNIRSNGLIAISLKEEDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  +  V GD  + ++     ++ F++D + +  R   GVRL   +DG 
Sbjct: 741 TANITEKNGP-LAGLTTVNGDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGA 799

Query: 697 ISDVIC 702
               + 
Sbjct: 800 KVVTMA 805


>gi|326794746|ref|YP_004312566.1| DNA gyrase subunit alpha [Marinomonas mediterranea MMB-1]
 gi|326545510|gb|ADZ90730.1| DNA gyrase, A subunit [Marinomonas mediterranea MMB-1]
          Length = 881

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/786 (31%), Positives = 394/786 (50%), Gaps = 48/786 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+E+  D+   +
Sbjct: 4   LAKEIIPVSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELKNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYT
Sbjct: 64  KKSARIVGDVIGKYHPHGDSAVYETIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM +++  +L  ++++ VDF   Y+E ++ P V P++ P LL NG++GIAVGMAT+IP
Sbjct: 124 EIRMDKISHHLLMDLEKETVDFVPNYDESETMPEVLPARIPGLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LALID PEI I++L+E+I GPDFPTG   +  R  IVE+Y+ GRG   +
Sbjct: 184 PHNLTEVINGCLALIDRPEIEIDELMEFIPGPDFPTGA-FINGRAGIVEAYKTGRGRIYM 242

Query: 253 RARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR  VE++       IV TEIPYQ+ K+++IEKIAEL+  K++  + ++RDES +D   
Sbjct: 243 RARHHVEDMEKGNRQAIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +PD+++ +IF  + +++ F +NM  L     P+++ L  IL+ ++ HRREV
Sbjct: 303 IVIELRRGENPDVVVNNIFTQTQLQSVFGINMVALVD-GRPELLNLKQILECFVRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------- 415
           + RR+ F ++    R  IL+GL +A  NID +I +IR                       
Sbjct: 362 VTRRTIFELRKARERGHILEGLAVALANIDRVIELIRTSPSSAEAREKLIAESWQPGDVM 421

Query: 416 ---------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+ +Q  AIL+LRL  L  LE  ++ SE  +L
Sbjct: 422 AMLERAGADACRPDDLDPQFGFNNGAYRLSPDQAQAILDLRLHRLTGLEHEKLLSEYKDL 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +A   ++  +L +  +    I  E+  V++ F          +                +
Sbjct: 482 IAVIAELLEILGNPTRLMEVICEELEAVRDQFGDERLTEILTSRQDLTIADLIDEAPMVV 541

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
              +            ++ +      S+   K+ D +   L   + D ++L S  GK Y 
Sbjct: 542 TISDTGYAKSQPLEEYKAQRRGGRGKSSATMKDEDHISHLLVTSSHDTVMLFSNFGKVYW 601

Query: 575 LPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEES 629
           L    +       +   I  L+ L   + I      +       + + ++ G        
Sbjct: 602 LRVFEIPVASRTAKGRPIVNLLPLAEGEHISALLPLNDEMEDSYIFMATANGTVKKTAVE 661

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
                   G   L +   +++  V + +G+  + +V  + K + F    +  M R   GV
Sbjct: 662 YFARPRSTGLIALSLDENDELVGVAQTSGENDIMLVSSSGKTIRFKESDVRAMGRTAAGV 721

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R     D     V      EG + + +    + +        +  RGG G +  +   R+
Sbjct: 722 RGIRLADEYKV-VSLIVPQEGCSVLFACENGFGKRTLTEDFPVYGRGGQGVIGIQVSERN 780

Query: 748 GKFLSS 753
           G  + +
Sbjct: 781 GPVVGA 786



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 9/193 (4%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +     TV  +   +    +  S  L AL   E D L         + I+L+S+ GK  
Sbjct: 647 FMATANGTVKKTAVEYFARPR--STGLIALSLDENDELVGVAQTSGENDIMLVSSSGKTI 704

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                ++ +      A    I L     +V+  V    C +L     G        +   
Sbjct: 705 RFKESDVRAMGRTA-AGVRGIRLADEYKVVSLIVPQEGCSVLFACENGFGKRTLTEDFPV 763

Query: 634 NTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
             R G+  + +   E+   +    +V   D + ++ +   L+     ++    R  +GV 
Sbjct: 764 YGRGGQGVIGIQVSERNGPVVGATQVEDTDEIMLISDQGTLVRTRASEVSCQGRNTQGVT 823

Query: 689 LQSY-KDGGISDV 700
           L     D  +  V
Sbjct: 824 LIRLMNDEHLVGV 836


>gi|221201254|ref|ZP_03574294.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M]
 gi|221206292|ref|ZP_03579305.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2]
 gi|221173601|gb|EEE06035.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2]
 gi|221179104|gb|EEE11511.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M]
          Length = 867

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/789 (30%), Positives = 379/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ P++ PNLL NG+SGIAVGMAT++P HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNVPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L++NP+ +I++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLNNPDATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 EAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 RDVMAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D +L  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWIKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  +  K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR     +G     +     E  + + +    + +           RG  G +  +  
Sbjct: 728 RGVRGMQLDEGQQVIALLVAGSEDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 788 ERNGKVVAA 796



 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +    
Sbjct: 678 KGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDE 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 738 GQQVIALLVAGSEDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|221213573|ref|ZP_03586547.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1]
 gi|221166362|gb|EED98834.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1]
          Length = 889

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/789 (30%), Positives = 379/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 32  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 91

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 92  VGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAK 151

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 152 IGHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNE 211

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L++NP+ +I++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 212 VVDACQHLLNNPDATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 270

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 271 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 330

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 331 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLSHRREVLTRRTV 389

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 390 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRA 449

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 450 EAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEY 509

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 510 RDVMAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTEDLITPQD 569

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D +L  S  G+
Sbjct: 570 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGR 629

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 630 VYWIKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMATSLGTVKKT 689

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  +  K + F  + +  M R  
Sbjct: 690 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREA 749

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR     +G     +     E  + + +    + +           RG  G +  +  
Sbjct: 750 RGVRGMQLDEGQQVIALLVAGSEDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTS 809

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 810 ERNGKVVAA 818



 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +    
Sbjct: 700 KGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDE 759

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 760 GQQVIALLVAGSEDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 819

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 820 LVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 862


>gi|295098107|emb|CBK87197.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 878

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNITEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKEILSAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKASLVARP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S ++    I  E+  V++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSAERLMEVIREELELVRDQFGDERRTEITANSSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NREDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  + +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +   +       RG  G + 
Sbjct: 715 GRTATGVRGIKLAGEDSVVSLIVPRGEGA-ILTVTQNGYGKRTAESEYPTKSRGTQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     DS+   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKENAVRAMGRTATGVRGIKLAGEDSVVSLIVPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAESEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|329576323|gb|EGG57838.1| DNA gyrase, A subunit [Enterococcus faecalis TX1467]
          Length = 833

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 398/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   +     R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRISIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFGKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  +  V GD  + ++     ++ F++D + +  R   GVRL   +DG 
Sbjct: 741 TANITEKNGP-LAGLTTVNGDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGA 799

Query: 697 ISDVIC 702
               + 
Sbjct: 800 KVVTMA 805


>gi|311278801|ref|YP_003941032.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1]
 gi|308747996|gb|ADO47748.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1]
          Length = 878

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  ISIE L+ +I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDENISIEGLMAHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  IL+ +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKEILEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARS 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVSAMLERAGDDAARPEWLEPQFGIHDGKYFLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  ++E F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREELELIREQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  + +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +   +       RG  G + 
Sbjct: 715 GRTATGVRGIKLAGEDSVVSLIIPRGEGA-ILTVTQNGYGKRTAEGEYPTKSRGTQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     DS+   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKENAVRAMGRTATGVRGIKLAGEDSVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                  G   +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDEHVVGLQRVAEPVDDEEL 848


>gi|296452675|ref|ZP_06894366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP08]
 gi|296258457|gb|EFH05361.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP08]
          Length = 808

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/751 (33%), Positives = 413/751 (54%), Gaps = 15/751 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
              +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++
Sbjct: 4   NNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATSIP 
Sbjct: 124 AKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A + LIDNPE S++ L++++ GPDFPT   I+  +ESI E+YR GRG  +VR
Sbjct: 184 HNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAA-IIMGKESIAEAYRTGRGKVKVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R  +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  +   ++
Sbjct: 243 SRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  S ME  F + M  L     P+V+ L  IL  ++ H+ +V+ 
Sbjct: 303 IELKRDANANIVLNNLYKHSQMEDTFSIIMLALVD-GQPRVLNLKQILYHYIKHQEDVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ F +   + R  IL+GL IA  NID +I++IR     +      + +F+LTE Q  A
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFNLTEIQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +S   
Sbjct: 422 ILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDER 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               R        R   +  + A+       +        +S K     +SAL  +E D 
Sbjct: 482 RTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDF 541

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY 608
           ++  +   T  R+L  +  G+ + L A  +  G+   +  AI  L+ L+ ++ I T    
Sbjct: 542 VRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI 601

Query: 609 ---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664
              D    LL+ + KG     +  E     + G   + +  ++++  V    G   V +V
Sbjct: 602 DGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLV 661

Query: 665 GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRS 722
            +    + F  + I  M R   GV+  +        V+   +  +G   +  +   + + 
Sbjct: 662 TKEGMSIRFDENDIRYMGRTAMGVKGITLSKED--FVVSMNLCSKGTDVLVVSKNGFGKR 719

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            N        R G G        ++G  + +
Sbjct: 720 TNIEEYRSQIRAGKGIKTYNISEKTGTIVGA 750



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 65/192 (33%), Gaps = 7/192 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++           +   L A+  ++ D L           +LL++ +G +      ++  
Sbjct: 618 IVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRY 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   I L+    +V+  +      +LVVS  G        E  +  R GK   
Sbjct: 678 MGRTAMGV-KGITLSKEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIK 736

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG- 696
             +  EK   +     V   D + ++  +  L+   +++I    R   GV+L    D   
Sbjct: 737 TYNISEKTGTIVGADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVN 796

Query: 697 ISDVICFKICEG 708
           +  +    I E 
Sbjct: 797 VVSIAKINIEEE 808


>gi|255102905|ref|ZP_05331882.1| DNA gyrase subunit A [Clostridium difficile QCD-63q42]
          Length = 808

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/751 (33%), Positives = 412/751 (54%), Gaps = 15/751 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
              +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++
Sbjct: 4   NNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATSIP 
Sbjct: 124 AKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A + LIDNPE S++ L++++ GPDFPT   I+  +ESI E+YR GRG  +VR
Sbjct: 184 HNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAA-IIMGKESIAEAYRTGRGKVKVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R  +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  +   ++
Sbjct: 243 SRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  S ME  F + M  L     P+V+ L  IL  ++ H+ +V+ 
Sbjct: 303 IELKRDANANIVLNNLYKHSQMEDTFSIIMLALVD-GQPRVLNLKQILYHYIKHQEDVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ F +   + R  IL+GL IA  NID +I++IR     +      + +F LTE Q  A
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFKLTEIQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +S   
Sbjct: 422 ILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDER 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               R        R   +  + A+       +        +S K     +SAL  +E D 
Sbjct: 482 RTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDF 541

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY 608
           ++  +   T  R+L  +  G+ + L A  +  G+   +  AI  L+ L+ ++ I T    
Sbjct: 542 VRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI 601

Query: 609 ---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664
              D    LL+ + KG     +  E     + G   + +  ++++  V    G   V +V
Sbjct: 602 DGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLV 661

Query: 665 GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRS 722
            +    + F  + I  M R   GV+  +        V+   +  +G   +  +   + + 
Sbjct: 662 TKEGMSIRFDENDIRYMGRTAMGVKGITLSKED--FVVSMNLCSKGTDVLVVSKNGFGKR 719

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            N        R G G        ++G  + +
Sbjct: 720 TNIEEYRSQIRAGKGIKTYNISEKTGTIVGA 750



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 65/192 (33%), Gaps = 7/192 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++           +   L A+  ++ D L           +LL++ +G +      ++  
Sbjct: 618 IVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRY 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   I L+    +V+  +      +LVVS  G        E  +  R GK   
Sbjct: 678 MGRTAMGV-KGITLSKEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIK 736

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG- 696
             +  EK   +     V   D + ++  +  L+   +++I    R   GV+L    D   
Sbjct: 737 TYNISEKTGTIVGADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVN 796

Query: 697 ISDVICFKICEG 708
           +  +    I E 
Sbjct: 797 VVSIAKINIEEE 808


>gi|326802622|ref|YP_004320440.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650616|gb|AEA00799.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a]
          Length = 880

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/749 (30%), Positives = 385/749 (51%), Gaps = 18/749 (2%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
              +   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKSARI
Sbjct: 10  PREISHEMRNSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR+++
Sbjct: 70  VGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMRYTEARLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +++ ++++ VDF   Y+ E+ EP V PS+FPNLL NG +GIAVGM T+IP HN+ E
Sbjct: 130 IALEMVRDINKNTVDFIPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMTTNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NP+ + + L+E + GPDFPT GI++  +  I ++Y  G+G   VRAR  +
Sbjct: 190 VIQALHILMKNPQATTQDLMEALPGPDFPTAGIVI-GKAGIKKAYETGKGRIIVRARAEI 248

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           + +  G   I+V+EIPY V K++L+E+IA+L   KRI  +  +RDE+      ++    +
Sbjct: 249 DTMASGKERIIVSEIPYMVNKAKLVERIADLARDKRIDGITAVRDETGRQGMRIVIECRK 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
                +++ ++F  + M+T F  NM  +    VP+ + L  IL+ +L H+ E++ RRS F
Sbjct: 309 DASASVILNNLFKQTQMQTNFNFNMVAID-QGVPKTLSLKQILRRYLDHQEEIIRRRSIF 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLR 435
             +  + R  IL+GL IA  +IDEI+ I+R+         + + ++ L++ Q  AIL++R
Sbjct: 368 EKEKAEARAHILEGLQIALDHIDEIVNILRSSKTGDQAKTIFMDQYGLSDKQAQAILDMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  +I +E  +L+AE   ++ +L S ++++  I  E+ E+++ F        R
Sbjct: 428 LVRLTGLEREKIDNEHKDLMAEIAYLNEVLASEEKRYEIIYQELLEIEKRFGDERRTEIR 487

Query: 496 RTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
                 +   D       +I       +        R+       +  +  ++GD +   
Sbjct: 488 VGEITNLEDEDLIEESNVLITLSRKGYIKRVEDSEYRTQNRGGRGVKGMALQDGDHIDAM 547

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY---- 608
           L   T D IL  +  G+ + +    +       +   I  L++L  ++ +          
Sbjct: 548 LSTSTHDVILCFTDRGRVFQIKGYEIPEYGRAAKGLPIVNLLNLQEDEQVRGVINVTPSD 607

Query: 609 ---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664
              DS      V+ +G        E       G   + +  ++++  V++ +G D++ + 
Sbjct: 608 KETDSEDYFFFVTKQGTVKRTPVEEYFNIRNNGLIAINLRDDDELVAVLQTSGEDNIILG 667

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
                 + F+ D +  M R   GVR                  +    +    + Y +  
Sbjct: 668 SHQGYAVSFAEDDVRSMGRTATGVRGIRLDQDDYVVGASILGPD-QDVLIVTEKGYGKRT 726

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 +  RGG G        ++G  + 
Sbjct: 727 PADEYSIKHRGGKGVKTVNITEKNGPLVG 755



 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 70/202 (34%), Gaps = 12/202 (5%)

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILL 565
               + E     ++ +G ++              L A++ ++ D L   L     D I+L
Sbjct: 607 DKETDSEDYFFFVTKQGTVKRTPVEEYFNIRNNGLIAINLRDDDELVAVLQTSGEDNIIL 666

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
            S  G A +  A + +   G        I L+ +  +V A +      +L+V+ KG    
Sbjct: 667 GSHQGYAVSF-AEDDVRSMGRTATGVRGIRLDQDDYVVGASILGPDQDVLIVTEKGYGKR 725

Query: 626 VEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
               E     R GK      +   +   + L      + + ++ +   ++ F    I + 
Sbjct: 726 TPADEYSIKHRGGKGVKTVNITEKNGPLVGLATVDLDEDIMLMTDEGVVIRFHSVDISQT 785

Query: 682 SRG-KGVRLQSYKDGGISDVIC 702
            R  +GVRL    +      + 
Sbjct: 786 GRATQGVRLMRLDEAAHVSTMA 807


>gi|257417431|ref|ZP_05594425.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257159259|gb|EEU89219.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 833

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLIFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  +  V GD  + ++     ++ F++D + +  R   GVRL   +DG 
Sbjct: 741 TANITEKNGP-LAGLTTVNGDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGA 799

Query: 697 ISDVIC 702
               + 
Sbjct: 800 KVVTMA 805


>gi|161525434|ref|YP_001580446.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
 gi|189349829|ref|YP_001945457.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
 gi|160342863|gb|ABX15949.1| DNA gyrase, A subunit [Burkholderia multivorans ATCC 17616]
 gi|189333851|dbj|BAG42921.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
          Length = 867

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/789 (30%), Positives = 379/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L++NP+ +I++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLNNPDATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 EAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 RDVMAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D +L  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWIKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  +  K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR     +G     +     E  + + +    + +           RG  G +  +  
Sbjct: 728 RGVRGMQLDEGQQVIALLVAGSEDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 788 ERNGKVVAA 796



 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +    
Sbjct: 678 KGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDE 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 738 GQQVIALLVAGSEDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|83949819|ref|ZP_00958552.1| DNA topoisomerase IV subunit A [Roseovarius nubinhibens ISM]
 gi|83837718|gb|EAP77014.1| DNA topoisomerase IV subunit A [Roseovarius nubinhibens ISM]
          Length = 768

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/770 (51%), Positives = 533/770 (69%), Gaps = 27/770 (3%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +++ +      + V    LR A+ ERYL YALSTI  RA+PD RDG KPVHRRII+AM E
Sbjct: 2   NDLLDDPDQAPQAVAE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRIIYAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLGSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT VAE +L+G+ E+AVDFRD Y+   +EPVV P+ FPNLLANG+SGI
Sbjct: 121 DNPAASRYTEARMTAVAEAMLEGLAENAVDFRDNYDGTLTEPVVLPASFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A L LI  P+   + LL Y+ GPDFPTGGIIVE RE+I E+Y
Sbjct: 181 AVGMATNIPPHNIPELVDACLHLIKVPDARDDTLLNYVPGPDFPTGGIIVEPRENIAEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+R R+ VE++GRG W IVVTEIPYQVQKS+LIEK+AE+I  K++P+L D+RD
Sbjct: 241 RTGRGAFRLRCRYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPILADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+D+R++L P+++++DP++LM  ++  +D+E RF LNMNVL  G  P+V  +  +L+ 
Sbjct: 301 ESADDIRVILEPRSKNVDPEVLMGMLYRSTDLEVRFSLNMNVLIDGVTPKVCSMKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------- 413
           +L  RREVL RRS  RM+ ID R+E+L+GL++A+LN+D +I IIR ++ P          
Sbjct: 361 FLDFRREVLQRRSVHRMEKIDHRLEVLEGLIVAFLNLDRVIDIIRYDEDPKAALMREDWG 420

Query: 414 -------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                         P   +   LTE Q +A+LN+RLR+LR+LEE  +  E D L+ E+  
Sbjct: 421 RDFVRAMDEADYVPPAPGAPDGLTEVQAEAVLNMRLRALRRLEEMALVKERDALMEERAG 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ LL S   QW  I+ ++RE K+ F K  + G RRTTF E +   +    +AMIE+EPI
Sbjct: 481 LEDLLESEDLQWAAISDQLREAKKTFGKDYEGGARRTTFAE-AGEVEEVPIEAMIEREPI 539

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV S  GWIR++  H      L FK+GD      HA TTDR+L+ ++ G+ YT+ A NL
Sbjct: 540 TVVCSQMGWIRAMTGHIDLGRELKFKDGDGPSFMFHAETTDRLLVFASTGRFYTISAANL 599

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L++DL +  +I+  F++    K+L+ SS G+ F+V E E++A TR GK 
Sbjct: 600 PGGRGMGEPLRLMVDLPNEAEIIDIFIHKPGGKMLLASSAGDGFVVPEEELLAQTRTGKQ 659

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700
            L V  + + ++   V+GDHVAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD 
Sbjct: 660 VLNVRGDTRARVCKPVSGDHVAVVGENRKVLVFPLDELPEMGRGKGVRLQKYKDGGLSDA 719

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             F + EGL+W+D AGR   R+E DL  WLGKR G G + P+GFPR  +F
Sbjct: 720 TTFTLAEGLSWLDPAGR--TRTETDLGEWLGKRAGTGRMAPRGFPRDNRF 767


>gi|190575028|ref|YP_001972873.1| DNA gyrase subunit A [Stenotrophomonas maltophilia K279a]
 gi|190012950|emb|CAQ46582.1| putative DNA gyrase subunit A [Stenotrophomonas maltophilia K279a]
          Length = 904

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/816 (32%), Positives = 385/816 (47%), Gaps = 77/816 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+       +
Sbjct: 4   TAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGDQSVYD+LVRLAQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 64  FKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP
Sbjct: 124 EARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALIDNPEI ++ L+EYI GPDFPT G I+     IV  YR GRG  R+
Sbjct: 184 PHNLSESINACIALIDNPEIDVDGLMEYIPGPDFPTAG-IINGTAGIVAGYRTGRGRVRI 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D   +
Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME+ F +NM  L     PQ+M L  +L+ ++ HRREV+
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVD-GRPQLMNLKQMLEAFVRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P                   
Sbjct: 362 TRRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGA 421

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + LTE Q   IL +RL  L  LE+ ++  E   LL
Sbjct: 422 MLGAAGAEASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
                +  +L    +    I  E+  VK  F        R +          A     + 
Sbjct: 482 EVIAGLIHILEDPDRLLQVIREELVSVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                 V        R+ +      SA   KE D ++     +T D +L  ++ GK + L
Sbjct: 542 VSHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
           P   L        G  I   I L   + +        Y     +   +  G        E
Sbjct: 602 PVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRDYADGQFVFFATKNGTVKKTPLGE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    G   + +   N K + F  D++  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDEGDALVGVGLTDGQRDILLFASNGKTVRFGEDKVRSMGRTATGVR 721

Query: 689 LQSYKDGGISDVICFKICEG-------------------------------LTWIDSAGR 717
                 G     +      G                                  + +   
Sbjct: 722 GIKMPAGEEVVSLIVAESAGGIEDENEDDSGVEEAAANGDAVIEGADDASVQYILTATEN 781

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RG  G +  +   R+GK +++
Sbjct: 782 GYGKRTPLPDYPRKGRGTQGVIGIQTTERNGKLVAA 817



 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 31/95 (32%), Gaps = 5/95 (5%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGEN 667
             +L  +  G        +     R  +  + +     + + +  V+  + D V ++ + 
Sbjct: 773 QYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERNGKLVAAVLMGSSDEVLLISDG 832

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
             L+     +I  + R  +GV L           +
Sbjct: 833 GTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAV 867


>gi|193211771|ref|YP_001997724.1| DNA gyrase subunit A [Chlorobaculum parvum NCIB 8327]
 gi|193085248|gb|ACF10524.1| DNA gyrase, A subunit [Chlorobaculum parvum NCIB 8327]
          Length = 826

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/752 (32%), Positives = 381/752 (50%), Gaps = 13/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E +  +S+   + + YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL     
Sbjct: 1   MQREKILPISIEEEMRDAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQSNKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSAR+VGEV+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG++DGDS AA RY
Sbjct: 61  HKKSARVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +L+ +D++ VDF   +++   EP V PS  PNLL NG SGIAVGMAT+I
Sbjct: 121 TEVRMKAIAGEMLKDLDKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+    +A+ID+PEI I  L++Y+  PDFPTGG I+   E + ++Y  GRG   
Sbjct: 181 PPHNMREVVSGLIAMIDDPEIEITDLMKYVTAPDFPTGG-IIYGYEGVRQAYLTGRGKVV 239

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  VE     G   I+VTE+PYQV K RLIEKI EL+  K+I  + DIRDES  +  
Sbjct: 240 IRARAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++  ++  + M+  F + M  L    VP+V+ L  +++ ++ HR E
Sbjct: 300 RLVIELKRDAVPKVVLNHLYKHTPMQDTFGVIMLALVD-GVPRVLNLKEMMQYYIRHRNE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQ 427
           ++ RR+ + + A ++R  IL+GL I   N+DE+I  IR              RF LTE Q
Sbjct: 359 IVLRRTQYDLNAAEKRAHILEGLKICLDNLDEVITTIRQSPDTPTAQSRLIDRFGLTEVQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RL+ L  +E  +I  E    +A  E++ S+L S  +Q   I  E+ +V E++ 
Sbjct: 419 AKAILEMRLQRLTGMERQKIDDEYKQTMALIEELKSILASPAKQMEIIKEELLKVSEVYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  R            A     +       +        R        ++    K 
Sbjct: 479 DERRTEMRPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQHRGGRGVAGAQAKN 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDI--- 602
            D ++    A T + IL  +T G+ Y L    +        G ++  +++L   + I   
Sbjct: 539 EDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAGRSARGRSLANIMELPPGEKIRTY 598

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-V 661
           +    +D    +++ ++ G     +  +     R G   + +   +++       GDH V
Sbjct: 599 INIRNFDDPHFIIMATANGIVKKTDLKQYSNPRRTGINAITIEEGDELIEARLTDGDHQV 658

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +   +   + F   ++  M R   GV+  +  +      +        + +      Y 
Sbjct: 659 ILAKSSGYAVRFPESEVRSMGRTAMGVKGITLDEAERCISMVTTKRNDTSLLAVTDNGYG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        + KRG  G +  K   + G  + 
Sbjct: 719 KRSKVEDYRMTKRGARGVITIKAHEKIGNLVG 750



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 86/277 (31%), Gaps = 15/277 (5%)

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
           +++ ++ +       +               ++  +   +  +  GR      E+   +K
Sbjct: 535 QAKNEDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAGRSARGRSLANIMELPPGEK 594

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHT 559
                 +   +    +I         K+            ++A+  +EGD L  A     
Sbjct: 595 IRTYINIRNFDDPHFIIMATANGIVKKTDLKQYSNPRRTGINAITIEEGDELIEARLTDG 654

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVS 618
             +++L  + G A   P   + S       +   I L+  +  ++      +   LL V+
Sbjct: 655 DHQVILAKSSGYAVRFPESEVRSMGRTAMGV-KGITLDEAERCISMVTTKRNDTSLLAVT 713

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFS 674
             G     +  +     R  +  + + + EK   +  ++ V   D + ++  N  ++   
Sbjct: 714 DNGYGKRSKVEDYRMTKRGARGVITIKAHEKIGNLVGLLDVNDEDDLIIITTNGIVIRQH 773

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           +  I  + R   GVRL     G               
Sbjct: 774 VSDIRVLGRNTSGVRLIRLDAGDRISATARVPKSDDE 810


>gi|300112890|ref|YP_003759465.1| DNA gyrase subunit A [Nitrosococcus watsonii C-113]
 gi|299538827|gb|ADJ27144.1| DNA gyrase, A subunit [Nitrosococcus watsonii C-113]
          Length = 846

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/796 (32%), Positives = 405/796 (50%), Gaps = 65/796 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
             + + V  V++   ++  YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+  
Sbjct: 2   DEIAQEVFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  R PLI GQGNFG+IDGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+E + EP V P++ PNLLANG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKIAHELLADLNKETVDFVPNYDESEHEPAVLPARIPNLLANGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+  A +ALID+P +SI  L+ +I GPDFPT G IV     I E+Y  GRG  
Sbjct: 182 IPPHNLGELLNACIALIDDPALSIAGLMAHIPGPDFPTAG-IVNGIRGIQEAYLTGRGRI 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  VE + G G   I+VTE+PY V K+RL+EKI  L+  K+I  +  +RDES +D 
Sbjct: 241 VMRARTHVETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKDKKIVGIVGLRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    RS  P++++  +++ + +++ F +NM  L     PQ++ L   L+ +L HR+
Sbjct: 301 MRMVVELRRSEMPEVVLNQLYLHTQLQSVFGINMVALVD-GQPQLLNLKLALEVFLRHRQ 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------- 416
           EV+ RR+ F ++    R  +L+GL IA  NID +IA+I+    P                
Sbjct: 360 EVVTRRTMFELRKARERAHVLEGLAIALTNIDSMIALIKASSSPAEARDGLIARFWPPGV 419

Query: 417 ------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+  Q  AIL +RL  L  LE+ +I  E +
Sbjct: 420 VIDMLQRAGAASSPPEELEAAYGLQRDGYRLSPAQAQAILEMRLHRLTGLEQSKIIDEYE 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++    ++  +L + ++    I  E+ E+ E +S       RRT   +          +
Sbjct: 480 QVIIFISELLEILANPERLMAVIREELMEMLEQYSAP-----RRTEIQDNYVD---LRLE 531

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I++E + V +S+ G+         RS K      SA   KE D +     A+T D +L
Sbjct: 532 DLIQEENVVVTLSHSGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLL 591

Query: 565 LLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S+ GK Y      L        G+    L+ L   + I T      ++    + +V++
Sbjct: 592 CFSSRGKVYWKKVYELPQGSRIARGKPFVNLLPLEEGERINTVLSIREFEKDKYIFMVTA 651

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
            G       ++       G   L +   +++       G+  + +     K++ FS   +
Sbjct: 652 LGVVKKTSLADFSRPRSSGIIALDLREGDQLVGADLTDGEQEIMLFSSGGKVIRFSERDV 711

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             + R  +GV+           VI   I    T + +    Y +        L  RGG G
Sbjct: 712 RPLGRTARGVKGMELPSKHR--VIALIIAASGTILTATELGYGKRTAIAEYRLQGRGGKG 769

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +  PR+G  + +
Sbjct: 770 IISIRTTPRNGAVVGA 785



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 7/154 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S+ GK       ++         +   ++L     ++   +  S   +L  +  
Sbjct: 692 QEIMLFSSGGKVIRFSERDVRPLGRTARGV-KGMELPSKHRVIALIIAASGT-ILTATEL 749

Query: 621 GNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       +E     R GK  + +     +   +  V     D V ++     L+   +D
Sbjct: 750 GYGKRTAIAEYRLQGRGGKGIISIRTTPRNGAVVGAVQVEKEDEVVLISNGGTLIRTPVD 809

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            I  M R  +GV+L + ++G     I   + +G 
Sbjct: 810 NISLMGRNTQGVKLINLQEGERLVGIERIVEDGE 843


>gi|187777361|ref|ZP_02993834.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC
           15579]
 gi|187774289|gb|EDU38091.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC
           15579]
          Length = 846

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/752 (30%), Positives = 395/752 (52%), Gaps = 14/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G ++     I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSG-LIVGTRGIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE   G   I+VTEIPYQV KS+LIE +A L+  K+I  + DIRDES      
Sbjct: 241 IRAKAEIEEEK-GKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L     PQV+ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALV-NNQPQVLNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR      + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                  +              +  +       +   +     S K     + A   K+ 
Sbjct: 479 ERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQD 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAF 606
           D ++      T   IL  +  GK Y L A  +       +      LI + +N+ I T  
Sbjct: 539 DFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIINLIPIENNEKIQTVI 598

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVA 662
                D     ++ +  G     E  +  +  + G   + +  ++++  V    G + + 
Sbjct: 599 GLKDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEII 658

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +V +N   + F+ + +  M R   GV+  + ++   +  +   + +    +  +   + +
Sbjct: 659 IVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVVLEDEA-LLSISENGFGK 717

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +     + +RGG G +  K   ++G  + +
Sbjct: 718 RTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/509 (10%), Positives = 139/509 (27%), Gaps = 25/509 (4%)

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
                  ++     I+         ++  +E +V      +   R R R+ +      + 
Sbjct: 316 QLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRRRTRFDL--DKALAR 373

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
             ++  +   +     + K+        +    L +  + S +  + +L  K + L    
Sbjct: 374 AHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLTGLE 433

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
             +      ++  +      +L    +   +  + +++    +  E              
Sbjct: 434 REKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDI 493

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +   K ++I   +   I  +  +    +         T  + D  +      +     
Sbjct: 494 EDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMF--VTSTHS 551

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +       + + +  +        +   I   I                     +   
Sbjct: 552 TILFFTNRGKVYKLKAYEIPEAGRTAKGTNIINLI-------------PIENNEKIQTVI 598

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
             K               +I      +        L+A++ +E D L         + I+
Sbjct: 599 GLKDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEII 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +++ +G        ++         +   I L  +   V+  V      LL +S  G   
Sbjct: 659 IVTQNGYCIRFNEEDVRPMGRVATGV-KGITLREDDKAVSMEVVLEDEALLSISENGFGK 717

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE 680
             +  E   + R GK  +     +K   +     V   D + +V      +  ++ +I +
Sbjct: 718 RTDIEEYPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISK 777

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEG 708
            SR   GV+L    +      I     E 
Sbjct: 778 TSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|51244502|ref|YP_064386.1| DNA gyrase, subunit A [Desulfotalea psychrophila LSv54]
 gi|50875539|emb|CAG35379.1| probable DNA gyrase, subunit A [Desulfotalea psychrophila LSv54]
          Length = 847

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/770 (33%), Positives = 405/770 (52%), Gaps = 33/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  N  V+E    +S+   L++ YL YA+S I  RA+PD+RDG KPVHRR + AM E+G
Sbjct: 1   MTTENEAVQEQFPQISIEKELQKSYLDYAMSVIIGRALPDVRDGLKPVHRRALFAMRELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           + +   + KSARIVG+VIGK HPHGD + YD++VR+AQ F  RYPL+ GQGNFG++DGDS
Sbjct: 61  IAYNRPYVKSARIVGDVIGKYHPHGDTAAYDTIVRMAQEFSLRYPLVDGQGNFGSLDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT++   I+  +D+D VDF   Y+   +EP V PS+ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTRIDTEIVSDLDKDTVDFVPNYDNSLTEPSVMPSRVPNLLINGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LAL D+P I++ +L+  I GPDFPTG  I   R  I E+Y  
Sbjct: 181 GMATNIPPHNIVEVIDGLLALADDPNITVHELMSLITGPDFPTGAYI-CGRSGIREAYET 239

Query: 246 GRGGFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RA   VE    G    I++TEIPYQ  K+ L+EKIA L+  K+I  + ++RDE
Sbjct: 240 GRGIVVMRALTHVETSKDGKRESIIITEIPYQQNKAVLVEKIAHLVKDKKIEAISEVRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V+    R+ + ++++  ++ ++ M+  F + +  +     P ++ L  IL+ +
Sbjct: 300 SDRHGTRVVIELKRNENSEVVINQLYKMTPMQRSFGIILLAIV-NNKPMILNLKQILEHF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421
           L HR+ V++RR++F +   + +  IL+GL +A  N+DE++ +I+    P     +   RF
Sbjct: 359 LVHRKVVVYRRTAFELGKAEEKAHILEGLNVAINNLDEVVTLIKKAQNPPEAKTNLVERF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+  Q   IL++RL+ L  LE  +I S+ +N+L E  ++ ++L         I  E  E
Sbjct: 419 ELSPIQAQTILDMRLQRLTGLERGKIASDYENVLQEITRLKTILADEALILGIIKDEFLE 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           ++E +        RRT   +   A    L + +I  E + V +++ G+I+          
Sbjct: 479 IRETYGDE-----RRTVIID---AVDDLLPEDLIAPEDMAVTVTHSGFIKRNPAALYRSQ 530

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
                 +S     E D +     A T D  L  +  GK +      L        G+AI 
Sbjct: 531 HRGGKGVSGAKNIEEDFISDLYVASTLDTFLFFTNYGKVFWRKVYQLPLVGRTARGKAIV 590

Query: 592 LLIDLNHNQDIVTAFV---YDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            L++L+ ++ +        ++   K   +L+V+ +G        E     RKGK  L ++
Sbjct: 591 NLLELDESEKLAAILPVTSFEDEDKSKTILMVTKQGRIKKTSLQEFRRPLRKGKRALTIN 650

Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             +++     + GD  V +     K + F    +  M R   GVR  +  +     V   
Sbjct: 651 EGDEIIGAYLLNGDDTVLLCTSKGKAIHFHESDVRTMGRTAAGVRGITLGEDDEV-VSAI 709

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 + +      Y +        + KRGG G +  K   R+G  +S+
Sbjct: 710 VASSNDSILVVTENGYGKRSPIEEYRIQKRGGKGIIGIKQSERNGDLISA 759



 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 72/179 (40%), Gaps = 7/179 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
               AL   EGD +  A   +  D +LL ++ GKA      ++ +      A    I L 
Sbjct: 642 KGKRALTINEGDEIIGAYLLNGDDTVLLCTSKGKAIHFHESDVRTMGRTA-AGVRGITLG 700

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLV 653
            + ++V+A V  S   +LVV+  G        E     R GK  + +     + + +   
Sbjct: 701 EDDEVVSAIVASSNDSILVVTENGYGKRSPIEEYRIQKRGGKGIIGIKQSERNGDLISAK 760

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLT 710
                + + ++ ++ K++  +++ +  + R  +GVRL + + D  +  +      E   
Sbjct: 761 QVSDEEEIMIIADSGKMIRMNLENVRIIGRSTQGVRLINLEGDEKVVSMDTVARDESDL 819


>gi|115350970|ref|YP_772809.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD]
 gi|115280958|gb|ABI86475.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD]
          Length = 867

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/789 (31%), Positives = 378/789 (47%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L++N E +I++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLNNSEATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRATTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 REVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFVFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  ++ K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  T + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 788 ERNGKVVAA 796



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 738 GQQVIALLVAGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGKVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|237732271|ref|ZP_04562752.1| DNA gyrase subunit A [Citrobacter sp. 30_2]
 gi|226907810|gb|EEH93728.1| DNA gyrase subunit A [Citrobacter sp. 30_2]
          Length = 879

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARS 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVSAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  ++E F  +        +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIREQFGDARRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +      +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAEKDSVVSLIVPRGEGA-ILTVTQNGYGKRTAAEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +   E DS+   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAEKDSVVSLIVPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   + T ++++++  G       SE
Sbjct: 752 YGKRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVEDTDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|188533369|ref|YP_001907166.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99]
 gi|188028411|emb|CAO96272.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99]
          Length = 878

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/793 (32%), Positives = 396/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  I++E L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNITEVINGCLAYIDDENITVEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARGEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++T F +NM  L     P++MPL  IL+ +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKIMPLKDILEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P           
Sbjct: 355 VRHRREVITRRTIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WALGNVSAMLERAGDNAARPEWLEEQYGIRDGQYHLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E  +LLA+  ++  +L S ++    I  E+  +++ F           +         
Sbjct: 475 LDEYKDLLAQIAELLRILASSERLMEVIREELELIRDQFGDKRRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y     + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWNIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + +  ++++  V    G D   +     K++ F+   +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLRDDDELIGVSLTDGSDEAMLFSAAGKVVRFAESAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +G     +     +G   +      Y +   +       R   G + 
Sbjct: 715 GRTASGVRGIKLAEGDRVVSLIVPRDDGA-IMTVTQNGYGKRTANAEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGPVIGA 786


>gi|261340635|ref|ZP_05968493.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316]
 gi|288317048|gb|EFC55986.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316]
          Length = 878

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/793 (33%), Positives = 392/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ EISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNITEVINGCLAYIDDEEISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKEILSAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAALVAQP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WALGNVSAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +   +  +L S  +    I  E+  V++ F           +         
Sbjct: 475 LDEYKELLEQIAGLLHILGSADRLMEVIREELELVRDQFGDERRTEITANSSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NREDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  + +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +   +       RG  G + 
Sbjct: 715 GRTATGVRGIKLAGEDAVVSLIVPRGEGA-ILTVTQNGYGKRTAESEYPTKSRGTQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D++   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKENAVRAMGRTATGVRGIKLAGEDAVVSLIVPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAESEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|328953221|ref|YP_004370555.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109]
 gi|328453545|gb|AEB09374.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109]
          Length = 808

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/758 (34%), Positives = 402/758 (53%), Gaps = 30/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +E  V  V++   + + YL YALS I  RA+PD+RDG KPVHRRI+ AMSE G D+   +
Sbjct: 1   MESRVVHVNIEDEIRKSYLEYALSVIIGRALPDVRDGLKPVHRRILFAMSEAGNDYNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG+IDGD+ AA RYT
Sbjct: 61  KKSARIVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPLVDGQGNFGSIDGDAPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  +D++ VDF   Y+    EP+V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 121 EVRMTRLAGELLLDLDKETVDFIPNYDGSMQEPLVLPARAPNLLINGSSGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+C A LA I NP+IS+ +L+  + GPDFPT G  +   + I E+YR G+G  R+
Sbjct: 181 PHNLAEVCNALLAFIKNPQISLAELMAIMPGPDFPTAG-FIYGSDGIAEAYRTGKGLIRL 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR    E   G   I++ E+PYQV K +LIE+I EL+  K+I  + DIRDES  +   V
Sbjct: 240 RART-FLEQRGGREYIIINELPYQVNKVKLIERIVELVKDKKIEGITDIRDESDREGMRV 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +      ++  +F  ++M+  + +N+  +     P+++ L  +L E+L HRREV+
Sbjct: 299 VIQLRKDELAQPILNQLFAHTNMQVTYGINLVAIV-NNRPELLSLKDLLTEFLKHRREVI 357

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ + ++  + R  IL GL IA  ++D+IIA+IR+   P         RF+LTE Q  
Sbjct: 358 VRRTLYELRKAEERAHILAGLKIALDHLDQIIALIRSAASPSTARSQLVERFTLTEVQAQ 417

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RL+ L  LE  +I  E + LL +  +   +L +    +  I  ++ ++++ +   
Sbjct: 418 AILEMRLQRLTGLERQKIIDEYEQLLKDIARFKEILANEALVYQLIEADLIDLRDRYGDP 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT              + +I  E + V +S++G+I+          +      +
Sbjct: 478 -----RRTEII---PETAELTLEDLIPDEDMVVTVSHQGYIKRNPLNLYRSQRRGGKGRT 529

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +  KE D +     A T +  L+ S  G+ Y L    +   S    G+AI  L++    
Sbjct: 530 GMSIKEDDFVSQLYIASTHNYFLVFSNLGRIYWLKVHEIPVGSPSARGKAIVNLLNFGSQ 589

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + + T      +     L++ + +G     E          G     +   +++  V   
Sbjct: 590 EKLTTILPIREFVPEHYLVMATKRGIIKKTELMNFSRPRSGGLIACTLDEGDELVSVALT 649

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            G+  V +     K++ F+   + +M R  +GVR  +  +      +     EG   +  
Sbjct: 650 DGNKEVFLGTSLGKIIRFAEQDVRDMGRSARGVRGMTVAEDDCIVGMEILSAEGA-ILTV 708

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +        L KRGG G L  +   R+G  + 
Sbjct: 709 TANGYGKRTRHEEYRLQKRGGSGLLALRITDRNGPVVG 746



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 77/248 (31%), Gaps = 14/248 (5%)

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
              ++  +      +  G+           +K T    + E  P   ++         K+
Sbjct: 560 IYWLKVHEIPVGSPSARGKAIVNLLNFGSQEKLTTILPIREFVPEHYLVMATKRGIIKKT 619

Query: 536 HSVDLSALHF--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             ++ S             EGD L           + L ++ GK       ++       
Sbjct: 620 ELMNFSRPRSGGLIACTLDEGDELVSVALTDGNKEVFLGTSLGKIIRFAEQDVRDMGRSA 679

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             ++ +  +  +  IV   +  +   +L V++ G        E     R G   L +   
Sbjct: 680 RGVRGM-TVAEDDCIVGMEILSAEGAILTVTANGYGKRTRHEEYRLQKRGGSGLLALRIT 738

Query: 648 EK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++    + ++     D + ++ +  K++   +  I  + R  +GV+L   +       I 
Sbjct: 739 DRNGPVVGIIQVTEDDEIMLITDRGKIIRLPVTGISLIGRVTQGVKLIDTEPEERVVSIA 798

Query: 703 FKICEGLT 710
               +G  
Sbjct: 799 RLAEKGDE 806


>gi|89074076|ref|ZP_01160577.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp.
           SKA34]
 gi|89050214|gb|EAR55725.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp.
           SKA34]
          Length = 887

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/803 (31%), Positives = 396/803 (49%), Gaps = 62/803 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA I++ +I+I++L+EYI GPDFPT  +I   R+ I+++Y  
Sbjct: 177 GMATNIPPHNLGEVINGCLAYINDEDITIDQLMEYIPGPDFPTAAMIS-GRKGIIDAYHT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E    G   I+V EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRAKADIEVEKNGKETIIVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALD-NGQPKIFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ + ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 NHRREVVTRRTIYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +  +++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVSAMLERAGTDAARPEWLEEQFGIRDNQYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L+S  +    I  E+  VKE F+          +          
Sbjct: 475 EEYKALLDEIAELMYILSSSDRLMEVIREELELVKEQFNDERRTEITAASHDIDLEDLIT 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      +A   KE D ++  L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHEGYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L   S    G+ I  ++ L  N+ I        Y     + + ++ G  
Sbjct: 595 RGRMYWLKVYQLPLASRTARGKPIVNILPLEENERITAILPVREYTEDKFVFMATADGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID------ 676
                ++       G   + +   + +  V    GD  + +     K++ F         
Sbjct: 655 KKTPLTDFSRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAE 714

Query: 677 -----QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
                 +  M R   GVR     +G     +     +G   +      Y +         
Sbjct: 715 GNAKGGVRGMGRTAAGVRGIKLAEGDKVISLIVPHNDGD-VLTVTENGYGKRTELAEYPA 773

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+G  + +
Sbjct: 774 KSRATQGVVSIKVSERNGSVVGA 796


>gi|107022118|ref|YP_620445.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054]
 gi|105892307|gb|ABF75472.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054]
          Length = 867

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/789 (31%), Positives = 378/789 (47%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE +I++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLGNPEATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ESENAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 RDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFIFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  +  K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  T + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 788 ERNGKVVAA 796



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 738 GQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + ++ EM R  +GV L S  +G
Sbjct: 798 LVDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEG 840


>gi|172059975|ref|YP_001807627.1| DNA gyrase subunit A [Burkholderia ambifaria MC40-6]
 gi|171992492|gb|ACB63411.1| DNA gyrase, A subunit [Burkholderia ambifaria MC40-6]
          Length = 867

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/789 (31%), Positives = 378/789 (47%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L++N E +I++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLNNSEATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRATTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 REVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  ++ K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  T + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 788 ERNGKVVAA 796



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 738 GQQVIALLVAGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGKVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|283786032|ref|YP_003365897.1| DNA gyrase subunit A [Citrobacter rodentium ICC168]
 gi|282949486|emb|CBG89099.1| DNA gyrase subunit A [Citrobacter rodentium ICC168]
          Length = 878

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F  +        +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREELELIRDQFGDARRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAGEDKVVSLIIPRGEGA-ILTVTQNGYGKRTAAEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGEDKVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|254977348|ref|ZP_05273820.1| DNA gyrase subunit A [Clostridium difficile QCD-66c26]
 gi|255652275|ref|ZP_05399177.1| DNA gyrase subunit A [Clostridium difficile QCD-37x79]
 gi|306521989|ref|ZP_07408336.1| DNA gyrase, A subunit [Clostridium difficile QCD-32g58]
          Length = 808

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/751 (33%), Positives = 412/751 (54%), Gaps = 15/751 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
              +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++
Sbjct: 4   NNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATSIP 
Sbjct: 124 AKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A + LIDNPE S++ L++++ GPDFPT   I+  +ESI E+YR GRG  +VR
Sbjct: 184 HNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAA-IIMGKESIAEAYRTGRGKVKVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R  +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  +   ++
Sbjct: 243 SRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  S ME  F + M  L     P+V+ L  IL  ++ H+ +V+ 
Sbjct: 303 IELKRDANANIVLNNLYKHSQMEDTFSIIMLALVD-GQPRVLNLKQILYHYIKHQEDVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ F +   + R  IL+GL IA  NID +I++IR     +      + +F LTE Q  A
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEKFKLTEIQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +S   
Sbjct: 422 ILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKNEITIIKENYSDER 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               R        R   +  + A+       +        +S K     +SAL  +E D 
Sbjct: 482 RTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDF 541

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY 608
           ++  +   T  R+L  +  G+ + L A  +  G+   +  AI  L+ L+ ++ I T    
Sbjct: 542 VRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI 601

Query: 609 ---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664
              D    LL+ + KG     +  E     + G   + +  ++++  V    G   V +V
Sbjct: 602 DGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLV 661

Query: 665 GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRS 722
            +    + F  + I  M R   GV+  +        V+   +  +G   +  +   + + 
Sbjct: 662 TKEGMSIRFDENDIRYMGRTAMGVKGITLSKED--FVVSMNLCSKGTDVLVVSKNGFGKR 719

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            N        R G G        ++G  + +
Sbjct: 720 TNIEEYRSQIRAGKGIKTYNISEKTGTIVGA 750



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 65/192 (33%), Gaps = 7/192 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++           +   L A+  ++ D L           +LL++ +G +      ++  
Sbjct: 618 IVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRY 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   I L+    +V+  +      +LVVS  G        E  +  R GK   
Sbjct: 678 MGRTAMGV-KGITLSKEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIK 736

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG- 696
             +  EK   +     V   D + ++  +  L+   +++I    R   GV+L    D   
Sbjct: 737 TYNISEKTGTIVGADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVN 796

Query: 697 ISDVICFKICEG 708
           +  +    I E 
Sbjct: 797 VVSIAKINIEEE 808


>gi|169795027|ref|YP_001712820.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii AYE]
 gi|88758890|emb|CAJ77862.1| DNA gyrase [Acinetobacter baumannii AYE]
 gi|169147954|emb|CAM85817.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii AYE]
          Length = 904

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/827 (30%), Positives = 409/827 (49%), Gaps = 95/827 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  DNP ISIE L+EYI GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++  
Sbjct: 240 IRGKYHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F+ + +E  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVVVNNLFLNTQLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ F ++    R  IL+GL +A  NIDEII  I+    P                 
Sbjct: 359 VVTRRTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGV 418

Query: 420 -------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV AIL LRL  L  LE+ ++ 
Sbjct: 419 VALLEKAGAISVRPDEIEGEDPNRPFGLSDSFYRLSPTQVGAILELRLHRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN        I  E+ +V + +  +     RRT   E   +   
Sbjct: 479 AEYTEILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDA-----RRTEIVE---SRVD 530

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+         ++ +      SA   K+ D ++  + A   
Sbjct: 531 FCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             +L  +  GK Y L    +       +   I  L+ L+  + +        +     + 
Sbjct: 591 ATVLCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPENHYVF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + ++ G    VE  +       G   ++++ E+ +  V    G+  + +     K + F+
Sbjct: 651 MATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFA 710

Query: 675 IDQIPEMSR-GKGVRLQS-------YKDGGISD--------------------VICFKIC 706
              +  M R  KGVR            +                         V    + 
Sbjct: 711 ETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSTDSSLVSRIVSLVVVP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 771 ETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT 657
            IV+  V   T ++L  S+ G       ++     R GK  + + + E   ++   V + 
Sbjct: 762 RIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSID 821

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICF 703
               + ++ +   L+     ++    R  +GVRL    ++  +  V+  
Sbjct: 822 ETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870


>gi|221068230|ref|ZP_03544335.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1]
 gi|220713253|gb|EED68621.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1]
          Length = 898

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/817 (30%), Positives = 398/817 (48%), Gaps = 80/817 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  +SEP+V PS+ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L L+ NP+ SI++L+E I  PDFPT G I+     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDGCLHLLQNPDASIDELMEIIPAPDFPTAG-IIYGINGVKEGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++ L+ ++  F +NM  L     P++  L  +++ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALV-NGQPKLCNLKDLIQVFLEHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------------ 411
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAIIRN                    
Sbjct: 360 EVVTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKL 419

Query: 412 ---------------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                      +        + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRTDGGVVNADDYRPEGLEVEFGMQGNGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  ++++  E +  +L   ++    I  E+  VK  F +S    RR T       
Sbjct: 480 DKIVAEYKDIMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVE----Y 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+         RS K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKLATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D +L  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 596 ANTHDYLLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMFPLQDGEKINVVLPLTGENRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           +     + + +S G       +E     + G   + +   + +       G H V +  +
Sbjct: 656 FPEDHYVFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT---------WIDSAG 716
             K + F  + +  M R  +GVR  + ++      +     +  T          + +  
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMNIEEHQNVIAMLVAEADDGTGNVVAGSQSVLTATE 775

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +           RG  G +  +   R+GK +++
Sbjct: 776 NGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAA 812



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 85/272 (31%), Gaps = 25/272 (9%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       +   +  +    S   +   I                 G +   
Sbjct: 595 IANTHDYLLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMF---------PLQDGEKINV 645

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++  +++  +   +        +               + A+   EGD L  A    
Sbjct: 646 VLPLTGENRSFPEDHYVFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTD 705

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST------- 611
               ++L S  GKA      ++     +   ++ + ++  +Q+++   V ++        
Sbjct: 706 GKHDVMLFSDGGKAVRFDENDVRPMGRNARGVRGM-NIEEHQNVIAMLVAEADDGTGNVV 764

Query: 612 ---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVV 664
                +L  +  G       SE   + R  K  + +     + + +   +    D + ++
Sbjct: 765 AGSQSVLTATENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAATLVAPEDEIMLI 824

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            +   L+   + +I E+ R  +GV L +   G
Sbjct: 825 TDTGVLVRTRVAEIRELGRATQGVTLINLDAG 856


>gi|34497753|ref|NP_901968.1| DNA gyrase subunit A [Chromobacterium violaceum ATCC 12472]
 gi|34103609|gb|AAQ59970.1| DNA gyrase, subunit A [Chromobacterium violaceum ATCC 12472]
          Length = 866

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/799 (31%), Positives = 404/799 (50%), Gaps = 64/799 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ L  +    +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+
Sbjct: 2   TDNLFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDW 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVG+VIGK HPHGD +VYD++VRLAQ F  RYPL+ GQGNFG++DGD+AAA
Sbjct: 62  NRAYKKSARIVGDVIGKYHPHGDTAVYDTIVRLAQDFSLRYPLVDGQGNFGSVDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM ++A  +L  ++++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEIRMARIAHELLADIEKETVDFGPNYDGSEHEPLILPAKIPNLLVNGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +A LAL+ N +++I++L++ I  PDFPT G I+     + E YR GRG
Sbjct: 182 TNIPPHNLNEVVDACLALLANSDLTIDELIDIIPAPDFPTAG-IIYGTAGVKEGYRTGRG 240

Query: 249 GFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +RAR   E +G+G    I+V EIPYQV K+RL+E+I+EL+  K+I  + D+RDES +
Sbjct: 241 RVIMRARTHTEPIGKGDREAIIVDEIPYQVNKARLLERISELVRDKQIEGISDLRDESDK 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               V+    R   P++++  +F ++ ++  F +NM  L     P+++ L  IL+E+L H
Sbjct: 301 SGMRVVIELKRGEMPEVVLNHLFKMTQLQDSFGMNMVALVD-GQPRLLNLKQILEEFLRH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
           RREV+ RR+ F ++    R  IL+GL +A  N+DEIIA+I+  + P              
Sbjct: 360 RREVVTRRTIFELKKARERGHILEGLAVALSNVDEIIALIKASEAPPQAKAALMARAWRS 419

Query: 416 -------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                    +    + L++ Q  AIL++RL+ L  LE+ +I  E
Sbjct: 420 SLVEDMLSRVEGDKARPENIDPAFGMKEDGYHLSDTQAQAILDMRLQRLTGLEQDKIVGE 479

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              ++     +  +L   ++    I  E+  ++  F        RR+             
Sbjct: 480 YREIMDVILDLLDILAKPERISQIIGEELTAIRAQFGDP-----RRSEIEPYGGD---IN 531

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDR 562
            + +I  + + V IS+ G+I++                 A   K+ D ++    A+T D 
Sbjct: 532 IEDLITPQDMVVTISHTGYIKAQPIDDYSSQRRGGRGKQAAATKDDDFIETLFVANTHDY 591

Query: 563 ILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVV 617
           +L  S+ G+ Y     +L     +  G+ +  ++ L   + I        +     + + 
Sbjct: 592 VLCFSSRGRCYWRKVYDLPQGGRQSRGKPMVNVLPLEEGEKINALLPVKEFRDDQFVFMC 651

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID 676
           ++ G        +       G   + +   + +  V    GD  + +  +  K + FS  
Sbjct: 652 TANGTVKKTPLVDFSRPRTAGIIAVNLDDGDNLIGVALTHGDDQIMLFSDAGKAVRFSET 711

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            +  M R   GVR     D      +     E    + ++   Y +           RG 
Sbjct: 712 DVRPMGRNATGVRGMMLGDDHQVISLLVSNSEQQMVLTASDGGYGKRTCVGDFRRTSRGT 771

Query: 736 VGSLVPKGFPRSG-KFLSS 753
            G +      ++G K +++
Sbjct: 772 QGVIAMDLTDKTGLKLVAA 790



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 70/192 (36%), Gaps = 7/192 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  +  + A++  +GD+L      H  D+I+L S  GKA      ++     +   ++ +
Sbjct: 667 RPRTAGIIAVNLDDGDNLIGVALTHGDDQIMLFSDAGKAVRFSETDVRPMGRNATGVRGM 726

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
           +  + +Q I           +L  S  G        +    +R   G   + ++ +  +K
Sbjct: 727 MLGDDHQVISLLVSNSEQQMVLTASDGGYGKRTCVGDFRRTSRGTQGVIAMDLTDKTGLK 786

Query: 652 LVVKV---TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKIC 706
           LV        D + ++     L+   + ++ E  R  +GVRL +  +G  +  +      
Sbjct: 787 LVAASLVEETDDIMLITTGGVLIRTKVAEVRETGRSAQGVRLINLDEGEKLIGLEIVAES 846

Query: 707 EGLTWIDSAGRS 718
           E           
Sbjct: 847 EAECAEGETEGG 858


>gi|283832330|ref|ZP_06352071.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220]
 gi|291071977|gb|EFE10086.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220]
          Length = 878

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARS 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WNLGNVSAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  ++E F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIREQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +      +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAESDSVVSLIVPRGEGA-ILTVTQNGYGKRTAAEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +   E DS+   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAESDSVVSLIVPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   + T ++++++  G       SE
Sbjct: 752 YGKRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVEDTDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|322804285|emb|CBZ01835.1| DNA gyrase subunit A [Clostridium botulinum H04402 065]
          Length = 831

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 409/760 (53%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G ++     I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSG-LIVGTRGIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE   G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L     PQ++ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALV-NNQPQILNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR      + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + V +++ G+I+          K     +
Sbjct: 479 ERKT--------EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +       +      LI + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E S+  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G D + VV +N   + F+ + +  M R   GV+  + +    +  +   I E  T + 
Sbjct: 651 TKGNDEIIVVTQNGYCIRFNEEDVRPMGRVATGVKAITLRKADKAVSMDVVI-EDETLLS 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 710 ISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 55/509 (10%), Positives = 138/509 (27%), Gaps = 25/509 (4%)

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
                  ++     I+         I+  +E +V      +   R R R+ +      + 
Sbjct: 316 QLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRRTRFDL--DKALAR 373

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
             ++  +   +     + K+        +    L +  + S +  + +L  K + L    
Sbjct: 374 AHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLTGLE 433

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
             +      ++  +      +L    +   +  + +++    +  E              
Sbjct: 434 REKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDI 493

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +   K +++   +   I  +  +    +         T  + D  +      +     
Sbjct: 494 EDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMF--VTSTHS 551

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +       + + +  +        +   I   I                     +   
Sbjct: 552 TILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLI-------------PIENNEKIQTVI 598

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
             K               +I      +        L+A++ +E D L         D I+
Sbjct: 599 GLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEII 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +++ +G        ++         +   I L      V+  V      LL +S  G   
Sbjct: 659 VVTQNGYCIRFNEEDVRPMGRVATGV-KAITLRKADKAVSMDVVIEDETLLSISENGFGK 717

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE 680
             +  E   + R GK  +     +K   +     V   D + +V      +  ++ +I +
Sbjct: 718 RTDIEEYPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISK 777

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEG 708
            SR   GV+L    +      I     E 
Sbjct: 778 TSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|296103860|ref|YP_003614006.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058319|gb|ADF63057.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 878

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNITEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKEILSAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S ++    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSAERLMEVIREELELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGKDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +   +       RG  G + 
Sbjct: 715 GRTATGVRGIKLAGEDSVVSLIIPRGEGA-ILTVTQNGYGKRTAEGEYPTKSRGTQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 41.3 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     DS+   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGEDSVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                  G   +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|71906869|ref|YP_284456.1| DNA gyrase subunit A [Dechloromonas aromatica RCB]
 gi|71846490|gb|AAZ45986.1| DNA gyrase subunit A [Dechloromonas aromatica RCB]
          Length = 879

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/781 (31%), Positives = 376/781 (48%), Gaps = 48/781 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNKAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L+ +D++ VDF   Y+  ++EP+V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHQMLEDLDKETVDFGPNYDGSENEPLVMPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    LAL++NP +SIE L+ YI  PDFPT G ++     + E Y+ GRG   +RAR   
Sbjct: 190 VIAGCLALLENPALSIEDLIAYIPAPDFPTAG-LIYGMTGVREGYQTGRGRVIMRARTHF 248

Query: 259 --EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
              E   G   ++V EIPYQV K  LIEKIAEL+  K+I  + DIRDES +    ++   
Sbjct: 249 EDMEKSNGRQALIVDEIPYQVNKKSLIEKIAELVNEKKIEGISDIRDESDKSGMRIVIEL 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ +++  + ++  F +NM  L     P+++ L  +L+ +L+HRREV+ RR+
Sbjct: 309 KRGEVGEVILNNLYKQTQLQDTFGMNMVALVD-GQPRLLNLKQMLECFLSHRREVITRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------------ 418
            + ++    R  IL+GL +A  N+DEII +I+    P                       
Sbjct: 368 VYELRKARERGHILEGLAVALSNVDEIITLIKAAPTPADAKRGLMERTWRSAVVEEMLVR 427

Query: 419 -------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                + L++ Q  AIL LRL+ L  LE+ +I  E  +++A+  
Sbjct: 428 AASDASRPEGLAPEFGLSAQGYRLSDAQAQAILELRLQRLTGLEQDKIVGEYKDVMAKIL 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +L   ++    I  E+  ++E F           T               +     
Sbjct: 488 DLLDILAKPERITEIIVTELVAIREQFGDERRSEIILQTHELSLEDLITPQDMVVTLSHG 547

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             +        R+ +       A   K+ D +     A+T D IL  S  G+ Y L    
Sbjct: 548 GYIKAQPLADYRAQRRGGRGKQAAAIKDEDFVDHLFMANTHDFILCFSNRGRCYWLKVYE 607

Query: 580 LLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIAN 634
                    G+ I  L  L   + I        +     + + +  G       S+    
Sbjct: 608 APQGSRVSRGKPIVNLFPLEEGERINAVLPVKEFADDKFIFMATRAGTVKKTPLSDFSNP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY 692
            + G   + +  ++ +  V   TG   + +V    K + F  + +  M RG +GVR    
Sbjct: 668 RKAGIIAVDLLDDDYLIGVELTTGQSDIVLVSNAGKAVWFDEEDVRPMGRGARGVRGMKL 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + G     +     +  T + +    + +           RG  G        R+G  + 
Sbjct: 728 QAGQAVISLLVAESDQQTVLVATENGFGKRTVLADFRHSGRGTQGVKAIADSERNGVVIG 787

Query: 753 S 753
           +
Sbjct: 788 A 788



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 14/175 (8%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LL 615
                 I+L+S  GKA      ++         ++ +  L   Q +++  V +S  + +L
Sbjct: 689 TTGQSDIVLVSNAGKAVWFDEEDVRPMGRGARGVRGM-KLQAGQAVISLLVAESDQQTVL 747

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM-KLVVKVTG-DHVAVVGENRKLL 671
           V +  G       ++   + R   G   +  S    +      V   D V ++     L+
Sbjct: 748 VATENGFGKRTVLADFRHSGRGTQGVKAIADSERNGVVIGAKLVDDNDEVMLITTGGVLI 807

Query: 672 IFSIDQIPEMSRG-KGVRLQSYKDGG-------ISDVICFKICEGLTWIDSAGRS 718
              + +I  M R  +GV L S  DG        +++ +     EG + + +    
Sbjct: 808 RTRVSEIRGMGRATQGVTLISLDDGEKLAGLEKVAESVAEAEVEGESEVVAPETG 862


>gi|298675299|ref|YP_003727049.1| DNA gyrase subunit A [Methanohalobium evestigatum Z-7303]
 gi|298288287|gb|ADI74253.1| DNA gyrase, A subunit [Methanohalobium evestigatum Z-7303]
          Length = 830

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 415/762 (54%), Gaps = 29/762 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T   E++  V +   +++ Y+ YA+S I  RA+PD RDG KPVHRRI+++M E G+ +
Sbjct: 18  QETDTGEDISPVLIEEEMKKSYIDYAMSVIVGRALPDARDGLKPVHRRILYSMKEAGITY 77

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSAR+VG+V+GK HPHGD +VYDSLVR+ Q F  RYPL+ GQGNFG+IDGDSAAA
Sbjct: 78  DKPYKKSARVVGDVLGKFHPHGDMAVYDSLVRMVQEFSMRYPLVDGQGNFGSIDGDSAAA 137

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM +++E +L  +D++ V F+  Y+   +EP V P+K PNL+ NG++GIAVGMA
Sbjct: 138 MRYTEVRMEKISEEMLVDIDKETVPFQPNYDGALTEPTVLPAKLPNLIVNGSTGIAVGMA 197

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN++E+ +  L +IDNP++SI +L   I GPDFPT G I+   E I  +Y  GRG
Sbjct: 198 TNIPPHNLKEVADGLLMMIDNPDVSIPELRTAIKGPDFPTAGTIL-GTEGIKSAYETGRG 256

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++R+   +EE+      IVV+E+PYQV K+ LIE IA L+  K+I  + D+RDES  +
Sbjct: 257 RIKIRSVADIEEMKNDKHRIVVSELPYQVNKANLIESIASLVRDKKIQGISDLRDESDRE 316

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R+ +P++++  ++  + ++  + +    L    VP+V+ L  +L+ +L HR
Sbjct: 317 GIRIVIELARNTNPNVILNQLYKHTQLQVTYGIINLALVD-GVPKVLNLYELLQIYLNHR 375

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTE 425
            +V+ +RS ++++  + R  IL GL I   N+DE+I+ IRN             +F L E
Sbjct: 376 MDVIQKRSQYQLRKAEERAHILDGLKICLGNLDEVISFIRNSKTTPEAKEGLIEKFQLDE 435

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL++L  +E+ +I+SE + L+ +   +  ++ S  +++N I  E+ E+KE 
Sbjct: 436 AQAKAILDMRLQNLTAIEQDKIESEYNELVEKIADLKEIIASDSRKYNIIKDELTELKEN 495

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           ++       RRT       +D+   ++ +I +E + + I+N G+I+              
Sbjct: 496 YADE-----RRTDI---QSSDEELSEEDLIPEEDVLITITNSGYIKRLPVTTYSKQHRGG 547

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
             ++ ++ K+ D ++    A T D +LL +  G+        +     +  G+A+  L +
Sbjct: 548 RGVAGINVKDDDFVEDVFVASTRDYLLLFTNKGRVNCKKVYEIPQGSKQSRGKALVNLFE 607

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L +++ + +      +     LL+ +  G       S      + G   + ++  +++  
Sbjct: 608 LENDEAVSSMITVKEFSDDWNLLMATKYGTVKKTPLSSFKTRKKSGLIAINLNENDELVN 667

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGL 709
           V+   G + + +V    K + F+   +  M R  +GVR      D  I  +      E  
Sbjct: 668 VILTDGQNDIILVSSTGKAIRFAETNVRPMGRAAQGVRGIRLNPDDRIISMDTISDDENA 727

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +           RGG G    +  PR+G  +
Sbjct: 728 KLLTITQNGYGKRTKFEEYRRMNRGGRGVTTIQMTPRNGPVV 769



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 8/123 (6%)

Query: 594 IDLNHNQDIVTA--FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEE 648
           I LN +  I++      D   KLL ++  G     +  E     R G+    +       
Sbjct: 707 IRLNPDDRIISMDTISDDENAKLLTITQNGYGKRTKFEEYRRMNRGGRGVTTIQMTPRNG 766

Query: 649 KMKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKI 705
            +  V  V  D   VV      ++   +  I    R  +GV++ + ++   +  V   K 
Sbjct: 767 PVVNVKTVRDDDDIVVTSYQGLVIRIPVKDIRVQGRNTQGVKIMNMRENDKVIGVARIKK 826

Query: 706 CEG 708
            + 
Sbjct: 827 DDD 829



 Score = 47.5 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 2/104 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
              ++L ++ +G                G  +  +     N  +V          ++V S
Sbjct: 725 ENAKLLTITQNGYGKRTKFEEYRRMNRGGRGVTTIQMTPRNGPVVNVKTVRDDDDIVVTS 784

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
            +G    +   +I    R   G   + +   +K+  V ++  D 
Sbjct: 785 YQGLVIRIPVKDIRVQGRNTQGVKIMNMRENDKVIGVARIKKDD 828


>gi|293390066|ref|ZP_06634400.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950600|gb|EFE00719.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 887

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/810 (31%), Positives = 398/810 (49%), Gaps = 73/810 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VSL   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +   ++K
Sbjct: 6   QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG++DGD+ AA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L+ +I GPDFPT   ++  R+ I E+Y+ GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAA-LINGRKGIEEAYKTGRGKIYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E   +G   I+V EIPYQV K++LIEKIAE +  K+I  +  +RDES +D   ++ 
Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKDKKIEGISGLRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++ L+ M+  F +N+  L     P+++ L  +++ ++ HRREV+ R
Sbjct: 305 EIKRDAVGEVVLNNLYALTQMQVTFGINIVALDH-GQPKLLNLKQLIEAFVLHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R+ F ++    R  IL+GL IA  N+D II +IR    P+                    
Sbjct: 364 RTIFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLARPWQLGHVADML 423

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                             +    + LTE Q  AIL+LRL+ L  L   +I  E   LL  
Sbjct: 424 AASGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDA 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             K+  +L S ++    I  E+ +++E F+          +         A     +   
Sbjct: 484 IGKLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLS 543

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y L  
Sbjct: 544 HEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKV 603

Query: 578 GNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
             L        G  I  ++ LN N+ I        Y+    +++ ++ G    +  +E  
Sbjct: 604 YQLPQASRGARGRPIVNILPLNENERITAILPVAAYEEDKFVVMATAGGIVKKIALTEFS 663

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
                G   L +  E+++  V    G + + +     +++ FS   +  M R   GVR  
Sbjct: 664 RPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAMGRLATGVRGI 723

Query: 691 SYK--------------------------DGGISDVICFKICE-GLTWIDSAGRSYNRSE 723
                                        D  I  V+   I +     + +    Y +  
Sbjct: 724 KLALTNDLSDDESAVEIEDVSDDNAEETLDLNIDKVVSLVIPKNNGEILTATQNGYGKRT 783

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    R   G +  K   R+GK +++
Sbjct: 784 KLDEYPTKSRNTKGVISIKVSERNGKVVAA 813


>gi|299532465|ref|ZP_07045856.1| DNA gyrase subunit A [Comamonas testosteroni S44]
 gi|298719550|gb|EFI60516.1| DNA gyrase subunit A [Comamonas testosteroni S44]
          Length = 898

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/817 (30%), Positives = 398/817 (48%), Gaps = 80/817 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  +SEP+V PS+ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L L+ NPE SI++L+E I  PDFPT G I+     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDGCLHLLQNPEASIDELMEIIPAPDFPTAG-IIYGINGVKEGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++ L+ ++  F +NM  L     P++  L  +++ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALV-NGQPKLCNLKDLIQVFLEHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------------ 411
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAIIRN                    
Sbjct: 360 EVVTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKL 419

Query: 412 ---------------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                      +        + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRTDGGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  ++++  E +  +L   ++    I  E+  VK  F +S    RR T       
Sbjct: 480 DKIVAEYKDVMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVE----Y 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+         RS K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D +L  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 596 ANTHDYLLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMFPLQEGEKINVVLPLTGENRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           +     + + +S G       +E     + G   + +   + +       G H V +  +
Sbjct: 656 FPEDHFVFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT---------WIDSAG 716
             K + F  + +  M R  +GVR  + ++      +     +  T          + +  
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMNIEEHQNVIAMLVAEADDGTGNVVAGSQSVLTATE 775

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +           RG  G +  +   R+GK +++
Sbjct: 776 NGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAA 812



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 86/272 (31%), Gaps = 25/272 (9%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       +   +  +    S   +   I                 G +   
Sbjct: 595 IANTHDYLLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMF---------PLQEGEKINV 645

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++  +++  +   +        +               + A+   EGD L  A    
Sbjct: 646 VLPLTGENRSFPEDHFVFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTD 705

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST------- 611
               ++L S  GKA      ++     +   ++ + ++  +Q+++   V ++        
Sbjct: 706 GKHDVMLFSDGGKAVRFDENDVRPMGRNARGVRGM-NIEEHQNVIAMLVAEADDGTGNVV 764

Query: 612 ---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVV 664
                +L  +  G       SE   + R  K  + +     + + +   +    D + ++
Sbjct: 765 AGSQSVLTATENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAATLVAPEDEIMLI 824

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            +   L+   + +I E+ R  +GV L +  +G
Sbjct: 825 TDTGVLVRTRVAEIRELGRATQGVTLINLDEG 856



 Score = 42.5 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 59/229 (25%), Gaps = 8/229 (3%)

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L L    +         +   +   +K      S  ++   IA  + E   +   +   G
Sbjct: 647 LPLTGENRSFPEDHFVFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDG 706

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           +                +  +           N   +R +                    
Sbjct: 707 KHDVMLFSDGGKAVRFDENDVRPMGR------NARGVRGMNIEEHQNVIAMLVAEADDGT 760

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 +  +L  + +G                 + +  +     N  +V A +     +
Sbjct: 761 GNVVAGSQSVLTATENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAATLVAPEDE 820

Query: 614 LLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
           +++++  G       +EI    R   G T + +    K+  + ++  + 
Sbjct: 821 IMLITDTGVLVRTRVAEIRELGRATQGVTLINLDEGAKLIGLQRIVEND 869


>gi|304437901|ref|ZP_07397848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369123|gb|EFM22801.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 832

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 396/760 (52%), Gaps = 29/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              +  +  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM   G+    
Sbjct: 21  DFGQGRIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSK 80

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGDSAAA R
Sbjct: 81  PYKKSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMR 140

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++AEL+L+ +D++ VDF D Y+  + EP V P+KFP LL NGT+GIAVGMAT+
Sbjct: 141 YTEVRMSKIAELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATN 200

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L LIDNP+ +I++L+  I GPDFPT G ++   E I ++Y  GRG  
Sbjct: 201 IPPHNMVEVINGTLMLIDNPDTTIDELMGVIKGPDFPTAG-LILGTEEIRKAYTTGRGVI 259

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RAR  +E +  G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES     
Sbjct: 260 KMRARAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGVTDLRDESDRSGM 319

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++  ++  + ++  F + M  L     P +M L  +L+ ++ H+  
Sbjct: 320 RIVIELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVD-GQPVIMNLKHVLEHYIDHQET 378

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ + +   + R  IL+GL IA  ++D +I  IR        +  ++  F LTE Q
Sbjct: 379 VITRRTRYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQ 438

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+LRL+ L  LE  +I+ E   +L   E++  +L    +    I  E+ EV++ + 
Sbjct: 439 AQAILDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILADRMKVLAIIKNELIEVRDKYG 498

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                 +RRT   E++        + +I +E + V ++   +I+ +   +          
Sbjct: 499 D-----KRRT---EITFDASEMDIKDLIAEEDVVVTLTLNNYIKRIPLDTYRRQRRGGVG 550

Query: 548 GDSLKIAL--------HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
              +               T   IL  +  G+A+ L +  +       +  AI  L+ + 
Sbjct: 551 VRGMGTKETDIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQAKGTAIVNLLAVE 610

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           +++ I        + +   L + +  G       SE     + G   + +  ++++  V 
Sbjct: 611 NDERITAVIQVKEFRADRYLFLGTKHGVVKKTPLSEFGNIRKNGLRAVNLDEDDELIGVK 670

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G++ + +     K + F  D +  M R  +GVR  +  DG     +     +    +
Sbjct: 671 FTDGENRIMLGTRGGKAITFPEDGVRSMGRVARGVRGITLADGDEVVAMDVLRSDSE-VL 729

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +           RGG G +  K   ++G  + 
Sbjct: 730 TVTEGGYGKRTTASEYRTQTRGGKGLINMKVTEKTGPVVG 769



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L    ++V   V  S  ++L V+  G       SE    TR GK  + +   EK   +
Sbjct: 708 ITLADGDEVVAMDVLRSDSEVLTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTEKTGPV 767

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  V     + ++     ++  S+D+I  +SR  +GV+L +  +      + 
Sbjct: 768 VGIRVVRENQELMLITTEGIVIRTSVDEISLISRNTQGVKLMTIAESDRVASMA 821


>gi|154492132|ref|ZP_02031758.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC
           43184]
 gi|154087357|gb|EDN86402.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC
           43184]
          Length = 869

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/759 (29%), Positives = 396/759 (52%), Gaps = 23/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY ++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ +  +A ID   E+ +  L++YI  PDFPTG  I      + +++  G+G   +
Sbjct: 184 HNLSEVLDGCMAYIDTRGEMEVADLMQYIKAPDFPTGATIY-GYAGVKDAFETGKGRIVL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  + E       I+++EIPY V K+ LI+ IA+L+  KRI  + ++ DES      +
Sbjct: 243 RGKAEI-ETENNHEKIIISEIPYGVNKAELIKYIADLVNEKRIDGISNVNDESDRQGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +  +++  ++ ++ +++ F +N   L     P+++ L  ++K ++ HR EV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKMTALQSSFSVNNIALV-NGRPKLLNLKDLIKAFVDHRHEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ + ++  + R  IL+GL+IA  NIDE+IAII++     +    ++ RFSL++ Q  
Sbjct: 361 IRRTKYDLKKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMERFSLSDIQSR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E + +      +  +L +       I  E++E+K+ +   
Sbjct: 421 AIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLKEILENDDLCMKVIKDELQEIKDKYGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +         A  +  +       +  +     R+     V       ++ D
Sbjct: 481 RKTDIVYASEELNPEDFYADDEMIITISHMGYIKRTPLSEFRAQGRGGVGAKGSETRDED 540

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF- 606
            ++    A     +L+ +  GK Y L    +  G  + +  AIQ L+++  +  +     
Sbjct: 541 FVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGAKNSKGRAIQNLLNIEPDDKVNAFIR 600

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  LL  + KG              + G   + +  ++ +  V    G
Sbjct: 601 VKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIEVCMTNG 660

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD---GGISDVICFKICEGLTWID 713
            + V +   N + + F  + +  M R   GVR  +  D     +  ++C K  E  T + 
Sbjct: 661 NNEVLIANRNGRAIRFHENAVRVMGRTASGVRGMTLDDDSNDEVVGMVCIKDKEKETVLV 720

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +  N     +  RGG G        ++GK ++
Sbjct: 721 VSEQGYGKRSNIEDYRITNRGGKGVKTINITEKTGKLVA 759


>gi|117617684|ref|YP_856853.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559091|gb|ABK36039.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 915

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/831 (32%), Positives = 399/831 (48%), Gaps = 90/831 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+E+G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM +++  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ EI    LALI+N +++I++L+ YI GPDFPTGG I+  R  IV++YR 
Sbjct: 177 GMATNIPPHNLTEIVNGCLALIENGDLTIDELMTYITGPDFPTGG-IINGRSGIVQAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRA+  VE +       I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDE
Sbjct: 236 GRGSVYVRAKAEVEVDEKTSRETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + M+T F +NM  L     P+VM L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRGESGEIVLNNLYKHTQMQTTFGINMVALD-NNQPKVMNLKEILDAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           L HRREV+ RR+ F ++    R  IL+GL +A  NID +I +IR+   P           
Sbjct: 355 LLHRREVVTRRTVFELRKARDRAHILEGLAVALANIDPVIELIRHSATPADAKAGLVARG 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LTE Q  AIL+LRL  L  LE  +I
Sbjct: 415 WELGNVASMLEKAGDDAARPEWLEPEFGIREGHYYLTEQQAQAILDLRLHKLTGLEHEKI 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E  +LL    ++  +L S  +    I  E+  V+E +          ++         
Sbjct: 475 LEEYQSLLDLIAELLFILASPVRLMEVIRDELLAVREQYGDERRTEISMSSAEINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D ++  L A+T D IL  S
Sbjct: 535 TPEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           T GK Y L    L        G  I  L+ L+  + I        YD+   +   ++ G 
Sbjct: 595 TRGKVYWLKVYQLPEASRGARGRPIINLLPLDEGERITAILPVKEYDADKYVFFATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI------ 675
                 S+       G   + +   +++  V    G + + +  +  K++ F+       
Sbjct: 655 VKKTSLSDFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFAEGSGRAD 714

Query: 676 ----DQ----------------------------IPEMSR-GKGVRLQSYKDGGISDVIC 702
               D+                            +  M R   GVR      G     + 
Sbjct: 715 ADATDEVDTDDDAGNDDDGSDNGEGTESKGTFKGVRPMGRTAAGVRGIKLGAGDKVVSLI 774

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +G   + +    Y +           RG  G +  K   R+GK + +
Sbjct: 775 VPRGDGA-ILTATENGYGKRTALDEYPTKSRGTQGVISIKVDERNGKVIDA 824


>gi|332290506|ref|YP_004421358.1| DNA gyrase subunit A [Gallibacterium anatis UMN179]
 gi|330433402|gb|AEC18461.1| DNA gyrase subunit A [Gallibacterium anatis UMN179]
          Length = 877

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/817 (31%), Positives = 404/817 (49%), Gaps = 75/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + +++  V++   ++  YL YA+S I  RA+PD+RDG KPVHRR++ AM+  G
Sbjct: 1   MSD----LAKDIIPVNIEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMAVGG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   ++KSARIVG+VIGK HPHGD +VYD+LVR+AQPF  RYPL+ GQGNFG+IDGDS
Sbjct: 57  NDYNKPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYPLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARMTQ+A  +L  +D++ VD++  Y+  +  P V P+K P LL NG+SGIAV
Sbjct: 117 PAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVLPTKVPALLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN +I+I++L+ YI GPDFPT   I+  +  I E+Y+ 
Sbjct: 177 GMATNIPPHNLGEVVDGCLAYIDNEQITIDELMSYIPGPDFPTAA-IINGKRGIEEAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E   +G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES
Sbjct: 236 GRGKIYIRAKADIETDDKGRESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISGLRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++ L+ ++  F +N+  L     P+++ L  +++ ++
Sbjct: 296 DKDGMRIVIEVKRDAVGEIVLNNLYALTQLQVTFGINIVALDH-GQPKLLNLKELIEAFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ + ++    R  IL+GL IA  NID II +IRN   P            
Sbjct: 355 LHRREVVTRRTVYELRKARERAHILEGLAIALANIDPIIELIRNAPTPAAAKEGLLSQPW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +    + L+E Q  AIL+LRL+ L  LE  +I 
Sbjct: 415 QLGNVEAMLAAAGVDAARPEDLDENLGIRGGVYHLSEAQAQAILDLRLQKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E  +LL    ++  +L+S  +    I  E+ ++K  ++         ++          
Sbjct: 475 DEYKSLLDVIAELLHILHSPARLMEVIREELEKIKAQYNDPRRTEITASSGDINLEDLIN 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  S+
Sbjct: 535 PEDVVVTLSHEGYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L        G  I  L+ L  N+ I        Y     +++ ++ G  
Sbjct: 595 RGRLYWLKVYQLPQASRGARGRPIVNLLPLEENERITAILPVKEYAEDKFIVMATAGGLV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + +  ++++  V    G + + +     +++ F  + +  M 
Sbjct: 655 KKTALTEFSRPRANGIIAVNLRDDDELIGVDITEGNNEIMLFSAQGRVVRFDENAVRAMG 714

Query: 683 R-GKGVRLQSYK------------------------DGGISDVICFKICE-GLTWIDSAG 716
           R   GVR                             D  I  V+   I +     + +  
Sbjct: 715 RTAAGVRGIKLALTNDISDEENDNEESGNDETDQSLDLSIDKVVSLVIPKTNGAILTATQ 774

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +  +        R   G +  K   R+GK +++
Sbjct: 775 NGYGKRTDLAEYPTKSRNTKGVISIKVSERNGKVVAA 811


>gi|153932201|ref|YP_001382417.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 19397]
 gi|153935617|ref|YP_001385969.1| DNA gyrase subunit A [Clostridium botulinum A str. Hall]
 gi|152928245|gb|ABS33745.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 19397]
 gi|152931531|gb|ABS37030.1| DNA gyrase, A subunit [Clostridium botulinum A str. Hall]
          Length = 841

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/752 (30%), Positives = 396/752 (52%), Gaps = 14/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G ++     I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSG-LIVGTRGIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE   G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L     PQ++ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALV-NNQPQILNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR      + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                  +              +  +       +   +     S K     + A   K+ 
Sbjct: 479 ERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQD 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAF 606
           D ++      T   IL  +  GK Y L A  +       +      +I + +N+ I T  
Sbjct: 539 DFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIENNEKIQTVI 598

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVA 662
                D     ++ +  G     E  +  +  + G   + +  ++++  V    G + + 
Sbjct: 599 GLKDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEII 658

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +V +N   + F+ + +  M R   GV+  + ++   +  +   + +    +  +   + +
Sbjct: 659 IVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVVLEDEA-LLSISENGFGK 717

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +     + +RGG G +  K   ++G  + +
Sbjct: 718 RTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/509 (10%), Positives = 139/509 (27%), Gaps = 25/509 (4%)

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
                  ++     I+         I+  +E +V      +   R R R+ +      + 
Sbjct: 316 QLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRRTRFDL--DKALAR 373

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
             ++  +   +     + K+        +    L +  + S +  + +L  K + L    
Sbjct: 374 AHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLTGLE 433

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
             +      ++  +      +L    +   +  + +++    +  E              
Sbjct: 434 REKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDI 493

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +   K ++I   +   I  +  +    +         T  + D  +      +     
Sbjct: 494 EDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMF--VTSTHS 551

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +       + + +  +        +   I   I                     +   
Sbjct: 552 TILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNII-------------PIENNEKIQTVI 598

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
             K               +I      +        L+A++ +E D L         + I+
Sbjct: 599 GLKDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEII 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +++ +G        ++         +   I L  +   V+  V      LL +S  G   
Sbjct: 659 IVTQNGYCIRFNEEDVRPMGRVATGV-KGITLREDDKAVSMEVVLEDEALLSISENGFGK 717

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE 680
             +  E   + R GK  +     +K   +     +   D + +V      +  ++ +I +
Sbjct: 718 RTDIEEYPIHRRGGKGVITYKITDKTGPIVGARFIKEDDELMLVNSGDVAIRINVSEISK 777

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEG 708
            SR   GV+L    +      I     E 
Sbjct: 778 TSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|148378018|ref|YP_001252559.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 3502]
 gi|148287502|emb|CAL81561.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502]
          Length = 836

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/752 (30%), Positives = 396/752 (52%), Gaps = 14/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G ++     I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSG-LIVGTRGIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE   G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L     PQ++ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALV-NNQPQILNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR      + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                  +              +  +       +   +     S K     + A   K+ 
Sbjct: 479 ERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQD 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAF 606
           D ++      T   IL  +  GK Y L A  +       +      +I + +N+ I T  
Sbjct: 539 DFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIENNEKIQTVI 598

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVA 662
                D     ++ +  G     E  +  +  + G   + +  ++++  V    G + + 
Sbjct: 599 GLKDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEII 658

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +V +N   + F+ + +  M R   GV+  + ++   +  +   + +    +  +   + +
Sbjct: 659 IVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVVLEDEA-LLSISENGFGK 717

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +     + +RGG G +  K   ++G  + +
Sbjct: 718 RTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/509 (10%), Positives = 139/509 (27%), Gaps = 25/509 (4%)

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
                  ++     I+         I+  +E +V      +   R R R+ +      + 
Sbjct: 316 QLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRRTRFDL--DKALAR 373

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
             ++  +   +     + K+        +    L +  + S +  + +L  K + L    
Sbjct: 374 AHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLTGLE 433

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
             +      ++  +      +L    +   +  + +++    +  E              
Sbjct: 434 REKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDI 493

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +   K ++I   +   I  +  +    +         T  + D  +      +     
Sbjct: 494 EDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMF--VTSTHS 551

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +       + + +  +        +   I   I                     +   
Sbjct: 552 TILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNII-------------PIENNEKIQTVI 598

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
             K               +I      +        L+A++ +E D L         + I+
Sbjct: 599 GLKDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEII 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +++ +G        ++         +   I L  +   V+  V      LL +S  G   
Sbjct: 659 IVTQNGYCIRFNEEDVRPMGRVATGV-KGITLREDDKAVSMEVVLEDEALLSISENGFGK 717

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE 680
             +  E   + R GK  +     +K   +     +   D + +V      +  ++ +I +
Sbjct: 718 RTDIEEYPIHRRGGKGVITYKITDKTGPIVGARFIKEDDELMLVNSGDVAIRINVSEISK 777

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEG 708
            SR   GV+L    +      I     E 
Sbjct: 778 TSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|163759186|ref|ZP_02166272.1| putative topoisomerase IV subunit [Hoeflea phototrophica DFL-43]
 gi|162283590|gb|EDQ33875.1| putative topoisomerase IV subunit [Hoeflea phototrophica DFL-43]
          Length = 748

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/736 (63%), Positives = 603/736 (81%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI++AMS+MGL  G +FKK
Sbjct: 12  DDIQGVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMSDMGLRSGGSFKK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVGEV+G  HPHGDQS+YD+LVRLAQ F  RYPL++GQGNFGNIDGD+AAA RYTE+
Sbjct: 72  CAKIVGEVMGNFHPHGDQSIYDALVRLAQDFAVRYPLVNGQGNFGNIDGDNAAAMRYTES 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +MT VAEL+++G+ EDAVDFR TY+EE+SEP V P  FPNLLANG +GIAVGMATSIP H
Sbjct: 132 KMTAVAELLIEGIGEDAVDFRTTYDEENSEPTVLPGAFPNLLANGATGIAVGMATSIPPH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI  P+ ++E LLE++ GPDFPTGGI++ESRE+++E+Y+ GRGGFRVRA
Sbjct: 192 NAAELCDAALLLIRKPDATVEDLLEHVQGPDFPTGGIVIESREAMLEAYKTGRGGFRVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+ GRG + IV+TE+PYQVQKSRLIEKIAEL+IA+R+PLL+D+RDESAEDVR+VL 
Sbjct: 252 KWETEDTGRGGYQIVITEMPYQVQKSRLIEKIAELLIARRLPLLDDVRDESAEDVRLVLI 311

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+RS+DP LLMES+F L+D+E+R PLN+NVLSMGRVP+VM L  +L EWLAHRREVL R
Sbjct: 312 PKSRSVDPTLLMESLFRLTDLESRIPLNLNVLSMGRVPKVMGLGEVLSEWLAHRREVLQR 371

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+ AI+RR+E+L G LIAYLN+DE+I IIR ED+PK  ++  F L++ Q +AILN+
Sbjct: 372 RSRHRLAAIERRLELLSGFLIAYLNLDEVIRIIREEDEPKLELMKTFELSDVQAEAILNM 431

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE +I+ E D L AEK +I+SLL S  +QW  +A E+  V++ FSK T+LG 
Sbjct: 432 RLRSLRKLEELEIRKEFDALTAEKAEIESLLASDAKQWQTVAWEVGNVRKTFSKETELGA 491

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F E   AD A ++QAMIEKEPITVVIS +GWIR +K H  D ++L FK+GD LK+A
Sbjct: 492 RRTNFAEAPVADLAAIEQAMIEKEPITVVISEKGWIRGMKGHLPDFASLQFKDGDGLKLA 551

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
            HA+TTD++++++T GKAYTL A  L  GRGHGE +++++D++++Q ++TAFV+DS  KL
Sbjct: 552 FHANTTDKLVIVTTGGKAYTLGADKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDSARKL 611

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S+ GN FIV ES+++ANTRKGK  + V   ++ +L V V+GDHVAV+GENRK+LIF+
Sbjct: 612 LMASTAGNGFIVAESDMVANTRKGKQIMNVGLPDETRLCVPVSGDHVAVIGENRKMLIFA 671

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + Q+PEMSRGKGVRLQ YKDGGI+D+ CF + +GLTW DSAGR++NR++ +L  W+  R 
Sbjct: 672 LSQLPEMSRGKGVRLQRYKDGGIADIRCFAMADGLTWEDSAGRAHNRTQAELTEWIADRA 731

Query: 735 GVGSLVPKGFPRSGKF 750
             G LVPKGFPRSGKF
Sbjct: 732 QAGRLVPKGFPRSGKF 747


>gi|167752029|ref|ZP_02424156.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216]
 gi|167660270|gb|EDS04400.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216]
          Length = 862

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/771 (30%), Positives = 396/771 (51%), Gaps = 22/771 (2%)

Query: 2   GVDNI---SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
             +N+      N  +E  +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+
Sbjct: 11  SKNNMLTEEEKNAGLEGKIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRIL 70

Query: 59  HAMS-EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + MS E+ L      +KSARIVG+V+GK HPHGD SVY+++VR+AQ +  RYPL+ GQGN
Sbjct: 71  YDMSAELNLYSDKPTRKSARIVGDVLGKFHPHGDSSVYEAMVRMAQDWSMRYPLVDGQGN 130

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG++DGDS AA RYTEARM ++ + ++  +D+D +D+   +++   EP V P+K P LL 
Sbjct: 131 FGSMDGDSPAAMRYTEARMQKITDEVMADIDKDTIDWTLNFDDTIPEPTVLPTKIPLLLV 190

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG SGIAVGMAT++  HN+ E+ +A  A +DNPEI+ E+LL+Y+ GPDFPTGG I+   E
Sbjct: 191 NGASGIAVGMATNMAPHNLGEVIDACCAFVDNPEIACEELLKYVKGPDFPTGG-IIYGYE 249

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            + E+   GRG   +RAR  +E    G  CIV+TEIPY V K+ +I+KIA+LI  K+I  
Sbjct: 250 GVREALLTGRGRVVMRARTEIEHTASGRECIVITEIPYMVNKAEMIKKIADLINEKKIEG 309

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           +  I DES  +   ++          +++ +++  + ++T F +N   L     P ++ L
Sbjct: 310 ISYINDESDRNGMRIIVILKHDAVASVVLNTLYKNTPLQTSFAVNNIALV-NGRPMMLNL 368

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--- 414
             +++ ++ HR +V+ RR+ F +   ++R+ I+ GLLIA  NIDEII IIR    P    
Sbjct: 369 LDLVQHFVEHRHDVIVRRTRFDLAKAEKRLHIVLGLLIAQDNIDEIIHIIRAAKNPDLAK 428

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             M+ RFSL++ Q  AI+ +RLR+L  LE  ++ +E + L A+    + +L S + Q   
Sbjct: 429 QAMMERFSLSDAQASAIIEMRLRALTGLEHDKLVAERNELEAQIAYFNDVLGSRELQMKI 488

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           +  E+ EVK  +           +         A  +  +       +  +     R+  
Sbjct: 489 VKDELLEVKAKYGDERRSEIVYASEEFNPEDFYADDEMVITISHLGYIKRTPLAEYRTQN 548

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       ++ D ++    A   + +L  +  G+ Y L    +  G    +  AIQ 
Sbjct: 549 RGGVGAKGSATRDEDFIEHIYMATMHNTMLFFTEKGRCYWLKVYEIPEGTRSSKGRAIQN 608

Query: 593 LIDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           +I +  +  +               +   +++ +  G     +        + G   + +
Sbjct: 609 VIQIEPDDKVRAYINVKRLDDAEYVNNNYIIMCTKDGTIKKTKLEAYSRPRQNGVNAIVI 668

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVI 701
              +++      +G   V +     K + F+ + +  + R G GVR  S  +G  +  +I
Sbjct: 669 REGDQLIEAKLTSGSAEVMIAAREGKAIRFNENTVRPIGRVGAGVRGISLDEGDEVVGMI 728

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           C +       +  +   Y +  +     +  RGG G        ++GK +S
Sbjct: 729 CIEPNSSQDVLVLSENGYGKRTDLDEYRITNRGGKGVKTINITEKTGKLIS 779



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 10/133 (7%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSE-E 648
           I L+   ++V     +      +LV+S  G     +  E     R GK    + ++ +  
Sbjct: 716 ISLDEGDEVVGMICIEPNSSQDVLVLSENGYGKRTDLDEYRITNRGGKGVKTINITEKTG 775

Query: 649 KMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG-ISDVICFKI 705
           K+  +      + + ++  +   +  ++DQI    R  +GVR+ + ++G  I+ VI    
Sbjct: 776 KLISIQAVTDENDLMIINRSGLTIRTAVDQIRVAGRATQGVRIINLREGDAIASVIAVPA 835

Query: 706 CEGLT--WIDSAG 716
            E      +D AG
Sbjct: 836 NEEEEPAVLDGAG 848


>gi|259907952|ref|YP_002648308.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96]
 gi|224963574|emb|CAX55064.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96]
 gi|283477833|emb|CAY73749.1| DNA gyrase, A subunit [Erwinia pyrifoliae DSM 12163]
 gi|310768139|gb|ADP13089.1| DNA gyrase subunit A [Erwinia sp. Ejp617]
          Length = 878

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA I +  I++E L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNITEVINGCLAYIADENITVEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARGEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++T F +NM  L     P++MPL  IL+ +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKIMPLKDILEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P           
Sbjct: 355 VRHRREVITRRTIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WVLGNVSAMLERAGDNAARPEWLEDQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S ++    I  E+  +++ F           T         
Sbjct: 475 LDEYKELLTQIAELLRILGSSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y     + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWNIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 ++       G   + +  ++++  V   +G D   +     K++ F+   +  M
Sbjct: 655 VKKTALTDFSRPRSAGIIAVNLRDDDELIGVSLTSGSDEAMLFSAAGKVVRFAESAVRTM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +G     +     +G   +      Y +   ++      R   G + 
Sbjct: 715 GRTASGVRGIKLAEGDRVVSLIVPRDDGA-IMTVTQNGYGKRTANVEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGPVIGA 786


>gi|215482575|ref|YP_002324767.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294]
 gi|301511582|ref|ZP_07236819.1| DNA gyrase, A subunit [Acinetobacter baumannii AB058]
 gi|332854274|ref|ZP_08435274.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013150]
 gi|332865651|ref|ZP_08436477.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013113]
 gi|213986072|gb|ACJ56371.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294]
 gi|332728090|gb|EGJ59479.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013150]
 gi|332735172|gb|EGJ66252.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013113]
          Length = 904

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/827 (30%), Positives = 409/827 (49%), Gaps = 95/827 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  DNP ISIE L+EYI GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++  
Sbjct: 240 IRGKYHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F+ + +E  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVVVNNLFLNTQLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ F ++    R  IL+GL +A  NIDEII  I+    P                 
Sbjct: 359 VVTRRTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGV 418

Query: 420 -------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV AIL LRL  L  LE+ ++ 
Sbjct: 419 VALLEKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN        I  E+ +V + +  +     RRT   E   +   
Sbjct: 479 AEYTEILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDA-----RRTEIVE---SRVD 530

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+         ++ +      SA   K+ D ++  + A   
Sbjct: 531 FCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             +L  +  GK Y L    +       +   I  L+ L+  + +        +     + 
Sbjct: 591 ATVLCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPENHYVF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + ++ G    VE  +       G   ++++ E+ +  V    G+  + +     K + F+
Sbjct: 651 MATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFA 710

Query: 675 IDQIPEMSR-GKGVRLQS-------YKDGGISD--------------------VICFKIC 706
              +  M R  KGVR            +                         V    + 
Sbjct: 711 ETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSTDSSLVSRIVSLVVVP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 771 ETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT 657
            IV+  V   T ++L  S+ G       ++     R GK  + + + E   ++   V + 
Sbjct: 762 RIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSID 821

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICF 703
               + ++ +   L+     ++    R  +GVRL    ++  +  V+  
Sbjct: 822 ETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870


>gi|184159189|ref|YP_001847528.1| Type IIA topoisomerase [Acinetobacter baumannii ACICU]
 gi|213158310|ref|YP_002320361.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057]
 gi|301345404|ref|ZP_07226145.1| DNA gyrase, A subunit [Acinetobacter baumannii AB056]
 gi|301594798|ref|ZP_07239806.1| DNA gyrase, A subunit [Acinetobacter baumannii AB059]
 gi|332876018|ref|ZP_08443804.1| DNA gyrase, A subunit [Acinetobacter baumannii 6014059]
 gi|183210783|gb|ACC58181.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii ACICU]
 gi|213057470|gb|ACJ42372.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057]
 gi|322509103|gb|ADX04557.1| gyrA [Acinetobacter baumannii 1656-2]
 gi|323519133|gb|ADX93514.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332735884|gb|EGJ66925.1| DNA gyrase, A subunit [Acinetobacter baumannii 6014059]
          Length = 904

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/827 (30%), Positives = 409/827 (49%), Gaps = 95/827 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  DNP ISIE L+EYI GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++  
Sbjct: 240 IRGKYHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F+ + +E  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVVVNNLFLNTQLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ F ++    R  IL+GL +A  NIDEII  I+    P                 
Sbjct: 359 VVTRRTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGV 418

Query: 420 -------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV AIL LRL  L  LE+ ++ 
Sbjct: 419 VALLEKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN        I  E+ +V + +  +     RRT   E   +   
Sbjct: 479 AEYTEILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDA-----RRTEIVE---SRVD 530

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+         ++ +      SA   K+ D ++  + A   
Sbjct: 531 FCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             +L  +  GK Y L    +       +   I  L+ L+  + +        +     + 
Sbjct: 591 ATVLCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPENHYVF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + ++ G    VE  +       G   ++++ E+ +  V    G+  + +     K + F+
Sbjct: 651 MATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFA 710

Query: 675 IDQIPEMSR-GKGVRLQS-------YKDGGISD--------------------VICFKIC 706
              +  M R  KGVR            +                         V    + 
Sbjct: 711 ETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSADSSLVSRIVSLVVVP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 771 ETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT 657
            IV+  V   T ++L  S+ G       ++     R GK  + + + E   ++   V + 
Sbjct: 762 RIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSID 821

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICF 703
               + ++ +   L+     ++    R  +GVRL    ++  +  V+  
Sbjct: 822 ETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870


>gi|167581047|ref|ZP_02373921.1| DNA gyrase subunit A [Burkholderia thailandensis TXDOH]
          Length = 866

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/789 (30%), Positives = 379/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACLYLLNNPQASVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-NQPKLLNLREILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------------- 409
           + ++    R  +L+GL +A  NIDE IAII+                             
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRA 427

Query: 410 ------------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 EAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 RDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + ++ G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTTALGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  +  K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR     DG     +     E  + + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLDDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+G+ +++
Sbjct: 788 ERNGRVVAA 796



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDD 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 738 GQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|295406870|ref|ZP_06816674.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819]
 gi|294968335|gb|EFG44360.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819]
          Length = 889

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 403/762 (52%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y ++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYKAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      + + +V     ++   +  I +  R  +GVRL    D      +     
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812

Query: 707 EGLT 710
           +   
Sbjct: 813 DAED 816



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|224824087|ref|ZP_03697195.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002]
 gi|224603506|gb|EEG09681.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002]
          Length = 861

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/794 (30%), Positives = 391/794 (49%), Gaps = 50/794 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++      +    +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+ 
Sbjct: 1   MTDQ--FFAKETIPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELS 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG++DGD+
Sbjct: 59  NDWNRAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSVDGDN 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  ++++ VDF   Y+  + EP++ P+K PNLL NG+SGIAV
Sbjct: 119 AAAMRYTEIRMARIAHELLADIEKETVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA++ + +I+I++L++ I  PDFPT G I+     + E YR 
Sbjct: 179 GMATNIPPHNLNEVIDGCLAVLASSDITIDELIDIIPAPDFPTAG-IIYGTAGVKEGYRT 237

Query: 246 GRGGFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR   E++G+G    I+V E+PYQV K+RL+E+I EL+  K+I  + D+RDE
Sbjct: 238 GRGRVIMRARTHFEDIGKGDRQAIIVDELPYQVNKARLLERIGELVRDKQIEGISDLRDE 297

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +    V+    R   P++++  ++ L+ ++  F +NM  L     P+++ L  IL+E+
Sbjct: 298 SDKSGMRVVIELKRGEMPEVVLNHLYKLTQLQDSFGINMVALVD-GQPRLLNLKQILEEF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------- 416
           L HRREV+ RR+ F ++    R  IL+GL +A  N+DEIIA+I+  + P           
Sbjct: 357 LRHRREVVTRRTIFELRKARERGHILEGLAVALSNVDEIIALIKASETPPVAKIALMERE 416

Query: 417 -----------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                            + L+E Q  AIL LRL+ L  LE+ +I
Sbjct: 417 WRSPLVEEMLARVDQDKARPDGLLPEFGLKEQGYKLSEVQAQAILELRLQRLTGLEQDKI 476

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   ++     +  +L   ++    I+ E+  +K  F  +                  
Sbjct: 477 VGEYREIMEVILDLIDILARPERINQIISDELNAIKTQFGDARRSEIEPFGGDINIEDLI 536

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       +        RS +       A   K+ D ++    A+T D +L  S
Sbjct: 537 TPQDMVVTVSHSGYIKTQPVDDYRSQRRGGRGKQAAATKDDDFIETLFVANTHDYVLCFS 596

Query: 568 TDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +   +L        G+ I  ++ L   + I        +     + + ++ G 
Sbjct: 597 SFGRCYWIKVYDLPQGGRNSRGKPIVNVLPLAEGEKINAMLPVKEFRDDQFVFMCTANGT 656

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM 681
                  +       G   + +   + +  V    GD  V +  +  K + FS   +  M
Sbjct: 657 VKKTPLVDFSRPRTAGIIAVNLDEGDNLIGVALTHGDDQVMLFSDAGKAVRFSETDVRAM 716

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +G     +     E    + ++   Y +           RG  G + 
Sbjct: 717 GRNATGVRGMMLGEGQQVISLLVTCSEDQMVLTASDGGYGKRTRAGEFRHTSRGTQGVIA 776

Query: 741 PKGFPRSG-KFLSS 753
                ++G K +++
Sbjct: 777 MDLTDKTGLKLVAA 790



 Score = 94.1 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 71/181 (39%), Gaps = 7/181 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  +  + A++  EGD+L      H  D+++L S  GKA      ++ +   +   ++ +
Sbjct: 667 RPRTAGIIAVNLDEGDNLIGVALTHGDDQVMLFSDAGKAVRFSETDVRAMGRNATGVRGM 726

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
           +     Q I           +L  S  G        E    +R   G   + ++ +  +K
Sbjct: 727 MLGEGQQVISLLVTCSEDQMVLTASDGGYGKRTRAGEFRHTSRGTQGVIAMDLTDKTGLK 786

Query: 652 LVVKV---TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           LV        D V ++     L+   + ++ E  R  +GVRL +  +G    +   K+ E
Sbjct: 787 LVAASLVEETDDVMLITTGGVLIRTKVSEVRETGRSAQGVRLINLDEGEKL-ISLVKVAE 845

Query: 708 G 708
           G
Sbjct: 846 G 846


>gi|289422510|ref|ZP_06424353.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L]
 gi|289157082|gb|EFD05704.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L]
          Length = 815

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/763 (32%), Positives = 416/763 (54%), Gaps = 33/763 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
               +  + +   + + Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G+     +
Sbjct: 3   TNNRIIPIEISEEMRKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMMEQGITPDKPY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+V+GK HPHGD SVY ++V++AQ F  R  L+ GQGNFG++DGDS AA RYT
Sbjct: 63  RKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRGLLVDGQGNFGSVDGDSPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF   ++E   EP+V P+++PNLL NG++GIAVGMATSIP
Sbjct: 123 EARMSKLALELLRDIEKETVDFGPNFDESLEEPIVLPARYPNLLVNGSNGIAVGMATSIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A +  IDN +  +++LL+Y+ GPDFPT   IV   + I ++Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATVHYIDNQDCDVDELLDYVKGPDFPTAATIV-GYDGIKQAYKTGRGKVKV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE+ +G   IVVTEIPYQV K+RL+EKIA+L+  K++  + D+RDE+  +   +
Sbjct: 242 RAKAEIEELPKGKQQIVVTEIPYQVNKARLVEKIADLVKEKKVEGISDLRDETNREGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++ +++  S +E  F + M  +     P+++ L  +L  +L H+++V+
Sbjct: 302 VIELKRDTNANIVLNNLYKHSQLEDTFSIIMLAIVD-GTPKILNLKQVLGYYLDHQKDVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
            RR+ F ++    R  IL+GL IA  NID +I+IIR+    +     ++  F+L+E Q  
Sbjct: 361 TRRTQFELRKAHARAHILEGLKIALDNIDRVISIIRSSKTGQIAKDRLIEEFALSEIQAQ 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I  E  +L+A  E ++S+L    +    I  E+  +K      
Sbjct: 421 AILDMRLQRLTGLEREKIDKEYKDLMARIEYLESILADELKLLGVIKEEMLAIKAKHEDP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT       A+     + + E+E + + +++ G+I+          K     ++
Sbjct: 481 -----RRTQII---PAEGEFDVKDLFEEEDVAITLTHLGYIKRLPADTYKSQKRGGRGIA 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
           AL  +E D ++  +   T   IL  +  G+ Y L A  +  G+   +  AI  L+ LN  
Sbjct: 533 ALTTREEDFVRELISTTTYSTILFFTNRGRVYKLNAYEVPEGKRTSKGTAIVNLLQLNPG 592

Query: 600 QDIVTAFVYDST-------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + +     ++S          LL+ +  G     + SE     + G   + +   +++  
Sbjct: 593 EKVARTITFNSDNDTGNESDYLLMATKNGIVKKTQISEFKNINKSGLIAINLKDGDELIG 652

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V    G+  V +V EN   + F+   +  M R   GV+  +         +   I EG  
Sbjct: 653 VNMTDGNQEVVLVTENAMSIRFNEADVRPMGRTATGVKGITLSKDDRVVSMNL-IGEGDN 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +   + +  +        RGG G        ++GK + S
Sbjct: 712 LLVVSQNGFGKRSDVEEYRPQIRGGKGIKTYNITSKTGKIVGS 754



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 6/193 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++           +   L A++ K+GD L           ++L++ +  +      ++  
Sbjct: 622 IVKKTQISEFKNINKSGLIAINLKDGDELIGVNMTDGNQEVVLVTENAMSIRFNEADVRP 681

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                  +   I L+ +  +V+  +      LLVVS  G     +  E     R GK   
Sbjct: 682 MGRTATGV-KGITLSKDDRVVSMNLIGEGDNLLVVSQNGFGKRSDVEEYRPQIRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
              +   + + +   +    D + ++  N  L+   +++I    R   GV+L    +   
Sbjct: 741 TYNITSKTGKIVGSSLVNEDDEMMMINSNGVLIRIRVNEISIFGRITSGVKLMRTDEEVE 800

Query: 698 SDVICFKICEGLT 710
              I     E + 
Sbjct: 801 VVSIAKIKAEDIE 813


>gi|83720946|ref|YP_442169.1| DNA gyrase subunit A [Burkholderia thailandensis E264]
 gi|257138358|ref|ZP_05586620.1| DNA gyrase subunit A [Burkholderia thailandensis E264]
 gi|83654771|gb|ABC38834.1| DNA gyrase, A subunit [Burkholderia thailandensis E264]
          Length = 866

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/789 (30%), Positives = 379/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACLYLLNNPQASVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-NQPKLLNLREILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------------- 409
           + ++    R  +L+GL +A  NIDE IAII+                             
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRA 427

Query: 410 ------------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 EAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 RDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + ++ G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTTALGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  +  K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR     DG     +     E  + + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLDDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+G+ +++
Sbjct: 788 ERNGRVVAA 796



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDD 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 738 GQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDTEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|237793327|ref|YP_002860879.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657]
 gi|229262824|gb|ACQ53857.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657]
          Length = 826

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/752 (30%), Positives = 395/752 (52%), Gaps = 14/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N ++SI  L+  I GPDFPT G ++     I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSG-LIVGTRGIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE   G   I+VTEIPYQV KS+LIE +A L+  K+I  + DIRDES      
Sbjct: 241 IRAKAEIEEEK-GKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L     PQV+ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALV-NNQPQVLNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR      + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                  +              +  +       +   +     S K     + A   K+ 
Sbjct: 479 ERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQD 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAF 606
           D ++      T   IL  +  GK Y L A  +       +      LI + +N+ I T  
Sbjct: 539 DFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIENNEKIQTVI 598

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVA 662
                D     ++ +  G     E  +  +  + G   + +  ++++  V    G + + 
Sbjct: 599 GLKDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEII 658

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +V +N   + F+ + +  M R   GV+  + ++   +  +   + +    +  +   + +
Sbjct: 659 IVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVVLEDEA-LLSISENGFGK 717

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +     + +RGG G +  K   ++G  + +
Sbjct: 718 RTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/509 (10%), Positives = 139/509 (27%), Gaps = 25/509 (4%)

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
                  ++     I+         ++  +E +V      +   R R R+ +      + 
Sbjct: 316 QLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRRRTRFDL--DKALAR 373

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
             ++  +   +     + K+        +    L +  + S +  + +L  K + L    
Sbjct: 374 AHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLTGLE 433

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
             +      ++  +      +L    +   +  + +++    +  E              
Sbjct: 434 REKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDI 493

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +   K ++I   +   I  +  +    +         T  + D  +      +     
Sbjct: 494 EDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMF--VTSTHS 551

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +       + + +  +        +   I   I                     +   
Sbjct: 552 IILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLI-------------PIENNEKIQTVI 598

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
             K               +I      +        L+A++ +E D L         + I+
Sbjct: 599 GLKDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEII 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +++ +G        ++         +   I L  +   V+  V      LL +S  G   
Sbjct: 659 IVTQNGYCIRFNEEDVRPMGRVATGV-KGITLREDDKAVSMEVVLEDEALLSISENGFGK 717

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE 680
             +  E   + R GK  +     +K   +     V   D + +V      +  ++ +I +
Sbjct: 718 RTDIEEYPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISK 777

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEG 708
            SR   GV+L    +      I     E 
Sbjct: 778 TSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|168183733|ref|ZP_02618397.1| DNA gyrase, A subunit [Clostridium botulinum Bf]
 gi|182673195|gb|EDT85156.1| DNA gyrase, A subunit [Clostridium botulinum Bf]
          Length = 821

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/752 (30%), Positives = 395/752 (52%), Gaps = 14/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N ++SI  L+  I GPDFPT G ++     I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSG-LIVGTRGIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE   G   I+VTEIPYQV KS+LIE +A L+  K+I  + DIRDES      
Sbjct: 241 IRAKAEIEEEK-GKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L     PQV+ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALV-NNQPQVLNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR      + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                  +              +  +       +   +     S K     + A   K+ 
Sbjct: 479 ERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQD 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAF 606
           D ++      T   IL  +  GK Y L A  +       +      LI + +N+ I T  
Sbjct: 539 DFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIENNEKIQTVI 598

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVA 662
                D     ++ +  G     E  +  +  + G   + +  ++++  V    G + + 
Sbjct: 599 GLKDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEII 658

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +V +N   + F+ + +  M R   GV+  + ++   +  +   + +    +  +   + +
Sbjct: 659 IVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVVLEDEA-LLSISENGFGK 717

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +     + +RGG G +  K   ++G  + +
Sbjct: 718 RTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/509 (10%), Positives = 139/509 (27%), Gaps = 25/509 (4%)

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
                  ++     I+         ++  +E +V      +   R R R+ +      + 
Sbjct: 316 QLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRRRTRFDL--DKALAR 373

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
             ++  +   +     + K+        +    L +  + S +  + +L  K + L    
Sbjct: 374 AHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLTGLE 433

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
             +      ++  +      +L    +   +  + +++    +  E              
Sbjct: 434 REKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDI 493

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +   K ++I   +   I  +  +    +         T  + D  +      +     
Sbjct: 494 EDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMF--VTSTHS 551

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +       + + +  +        +   I   I                     +   
Sbjct: 552 IILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLI-------------PIENNEKIQTVI 598

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
             K               +I      +        L+A++ +E D L         + I+
Sbjct: 599 GLKDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEII 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +++ +G        ++         +   I L  +   V+  V      LL +S  G   
Sbjct: 659 IVTQNGYCIRFNEEDVRPMGRVATGV-KGITLREDDKAVSMEVVLEDEALLSISENGFGK 717

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE 680
             +  E   + R GK  +     +K   +     V   D + +V      +  ++ +I +
Sbjct: 718 RTDIEEYPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISK 777

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEG 708
            SR   GV+L    +      I     E 
Sbjct: 778 TSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|291547632|emb|CBL20740.1| DNA gyrase subunit A [Ruminococcus sp. SR1/5]
          Length = 850

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/774 (30%), Positives = 397/774 (51%), Gaps = 39/774 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L   ++E Y+ YA+S I  RA+PD+RDG KPV RR++++M E+ 
Sbjct: 1   MEDN---IFDKVHEVDLEKTMKESYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +L  +++D VDF+  ++E + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E   A + +IDN      E ++E+LLE + GPDFPTG  I+     I 
Sbjct: 178 GMATNIPPHNLRETINAVVKIIDNIVEEDRETTMEELLEIVKGPDFPTGATIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D
Sbjct: 237 EAYRTGRGKIRVRAVTNIETLPNGKSRIVVTELPYLVNKARLIEKIAELVRDKKIDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR---VPQVMPL 357
           + D S+ +   +     +  + ++++  ++  + ++  F + M  L        P+V+ L
Sbjct: 297 LNDHSSREGMRICIDLRKDANANVILNLLYKHTQLQDTFGVIMLSLVPNHGSMEPKVLNL 356

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--- 414
             +L+ +L H+  V+ RR+ + +     R  IL+GLL A  NIDE+I IIR     +   
Sbjct: 357 KEMLEYYLEHQENVVRRRTQYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRNVQIAK 416

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++ RF LT+ Q  AI+++RLR+L  LE  ++++E   L+ +  K  ++L   K     
Sbjct: 417 QELIDRFELTDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRKFQAILADRKLLLRV 476

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  EI  + E +        R+T+             + +I +E   + ++  G+I+ + 
Sbjct: 477 IREEILAIAEKYGD-----DRKTSI---GYDVYDISTEDLIPRENTVIAMTKLGYIKRMT 528

Query: 535 SHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
             +          +  +   E D ++  L   T   ++  +  G+ Y L    +      
Sbjct: 529 VDNFRSQNRGGRGIKGMQTIEDDYIEELLMTTTHHYLMFFTNTGRVYRLKVYEIPEAGRT 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G AI  L+ L   + I        Y+    L++ + KG        +     + G T 
Sbjct: 589 ARGTAIINLLQLAPGEKITAVIPLRKYEEGHYLMMATKKGLVKKTPIKDYENVRKTGLTA 648

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
           + +  ++++  V     +  + +V  + + + F    +    R   GVR  +  DG    
Sbjct: 649 IVLRDDDELIEVKATDNNKDIILVTRDGQCIRFKETDVRSTGRASMGVRGMNLTDGDEVV 708

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     +G   +  +     +        +  RGG G    K   ++G  + +
Sbjct: 709 AMQLN-TQGDYLLVVSENGMGKRTAMSEFVVQNRGGKGVKCYKITEKTGNVVGA 761



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 59/176 (33%), Gaps = 6/176 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 I+L++ DG+       ++ S       ++ + +L    ++V   +      LLV
Sbjct: 663 TDNNKDIILVTRDGQCIRFKETDVRSTGRASMGVRGM-NLTDGDEVVAMQLNTQGDYLLV 721

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           VS  G       SE +   R GK      +   +   +        + + ++     ++ 
Sbjct: 722 VSENGMGKRTAMSEFVVQNRGGKGVKCYKITEKTGNVVGAKAVNEENEIMMITTEGIIIR 781

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
                I  + R   GV++ +  +G     I     +      +  ++   + ++  
Sbjct: 782 LQCADISVLGRITSGVKMINLTEGVTVASIAKVRDKDPEADTTTEKADGETGDNEE 837


>gi|121605684|ref|YP_983013.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2]
 gi|120594653|gb|ABM38092.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2]
          Length = 889

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/808 (30%), Positives = 400/808 (49%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGDQSVYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP+V P++ PNLL NG+ GIAVGMAT+
Sbjct: 122 YTEIRLSKIAHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+ NPE SI++L+E I  PDFPTGG I+     + + YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLLKNPEASIDELMEIIPAPDFPTGG-IIYGINGVKDGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L     P++  L  +++ +++HRR
Sbjct: 301 MRLVIDLKRGEVPEVVLNNLYKQTQLQDTFGINMVALI-NGQPKLCNLKDLIQVFISHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------- 414
           EV+ RR+ F ++    R  +L+GL +A  NIDE IAIIRN   P                
Sbjct: 360 EVVTRRTVFTLRKARERGHVLEGLAVALANIDEFIAIIRNAPTPPVAKAELMTRAWDSSL 419

Query: 415 ------------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                               + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRAHADGGVVNADDYRPDGLEKSFGMGSDGLYRLSETQTQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E   ++AE + +  +L   ++    I  E+  +K  F + T LG RR+       
Sbjct: 480 DKIVAEYKEVMAEIDDLLDILARPERVSTIIGQELAAIKLEFGQ-TKLGARRSHI---EH 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
           +      + +I    + V +S+ G+         R+ K       A   KE D +     
Sbjct: 536 SSFDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSDRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        +     + G   + +   + +       G H V +  +
Sbjct: 656 FPADQYVFMATSMGTVKKTPLDDFNNPRKGGIIAVALDEGDYLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  M R  +GVR  + ++G     +        + + +    + +  + 
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMNLEEGQGVIAMLVAEDGEQSVLTATQMGFGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RG  G +  +   R+GK +++
Sbjct: 776 SEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 89/286 (31%), Gaps = 17/286 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G + T 
Sbjct: 595 IANTHDYILCFSDRGRLYWLKVWEVPAGSRGSRGRPIVNMF---------PLQEGEKITV 645

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++   ++      +        +               + A+   EGD L  A    
Sbjct: 646 VLALTGEKRSFPADQYVFMATSMGTVKKTPLDDFNNPRKGGIIAVALDEGDYLIGAALTD 705

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVV 617
               ++L S  GKA      ++     +   ++ + +L   Q ++   V +     +L  
Sbjct: 706 GKHDVMLFSDGGKAVRFDENDVRPMGRNARGVRGM-NLEEGQGVIAMLVAEDGEQSVLTA 764

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIF 673
           +  G       SE   + R  K  + +   E+   VV  T     D + ++ +   L+  
Sbjct: 765 TQMGFGKRTSISEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDRGVLVRT 824

Query: 674 SIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +I EM R  +GV L    +G        +I E    +D   ++
Sbjct: 825 RVSEIREMGRATQGVTLIGLDEGSQLS-GLQRIVENDATLDDTEKT 869


>gi|194366351|ref|YP_002028961.1| DNA gyrase subunit A [Stenotrophomonas maltophilia R551-3]
 gi|194349155|gb|ACF52278.1| DNA gyrase, A subunit [Stenotrophomonas maltophilia R551-3]
          Length = 904

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/816 (32%), Positives = 386/816 (47%), Gaps = 77/816 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+       +
Sbjct: 4   TAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGDQSVYD+LVRLAQPF  RY L+ GQGNFG++DGDSAAA RYT
Sbjct: 64  FKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP
Sbjct: 124 EARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALIDNPEI ++ L+EYI GPDFPT G I+     I+  YR GRG  R+
Sbjct: 184 PHNLTESINACIALIDNPEIDVDGLMEYIPGPDFPTAG-IINGTAGIIAGYRTGRGRVRI 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D   +
Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME+ F +NM  L     PQ+M L  +L+ ++ HRREV+
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVD-GRPQLMNLKQMLEAFVRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P                   
Sbjct: 362 TRRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPAEARERMLARLWEPGLVGS 421

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + LTE Q   IL +RL  L  LE+ ++  E   LL
Sbjct: 422 MLGAAGAEASRPDDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTEEYKQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
                +  +L    +    I  E+  VK  F        R +          A     + 
Sbjct: 482 EVIAGLIHILEDPDRLLQVIREELISVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                 V        R+ +      SA   KE D ++     +T D +L  ++ GK + L
Sbjct: 542 VSHAGYVKRQPVSVYRAQRRGGRGRSAASTKEEDFIEQLWLVNTHDTLLTFTSSGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
           P   L        G  I   I L   + +        Y     +   +  G        E
Sbjct: 602 PVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYADGQFVFFATKNGTVKKTPLGE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    G+  + +   N K + F  D++  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDEGDALVGVGLTDGERDILLFASNGKTVRFGEDKVRSMGRTATGVR 721

Query: 689 LQSYKDGGISDVICFKICEG-------------------------------LTWIDSAGR 717
                 G     +      G                                  + +   
Sbjct: 722 GIKMPAGEEVVSLIVAESAGGSEDENEDDNGVEETAANGDAVIDGADDASVQYILTATEN 781

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RG  G +  +   R+GK +++
Sbjct: 782 GYGKRTPLPDYPRKGRGTQGVIGIQTTERNGKLVAA 817



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 8/106 (7%)

Query: 604 TAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKV 656
                        +L  +  G        +     R  +  + +     + + +  V+  
Sbjct: 762 AVIDGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERNGKLVAAVLMG 821

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +GD V ++ +   L+     +I  + R  +GV L           +
Sbjct: 822 SGDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAV 867


>gi|169830227|ref|YP_001716209.1| DNA gyrase subunit A [Candidatus Desulforudis audaxviator MP104C]
 gi|169637071|gb|ACA58577.1| DNA gyrase, A subunit [Candidatus Desulforudis audaxviator MP104C]
          Length = 812

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/755 (33%), Positives = 404/755 (53%), Gaps = 30/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM  +GL      +KS
Sbjct: 7   KIVPIDINEELKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHNLGLTADKPHRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+ KLHPHGD +VYD+LVRLAQ F  RYPL+ G GNFG+IDGD+AAA RYTE R
Sbjct: 67  AYVVGEVLSKLHPHGDAAVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAAAAMRYTEVR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L  +D++ VDF   Y+    EPVV PS+ PNLL NG++GIAVGMAT+IP HN
Sbjct: 127 MARITSQMLADIDKETVDFIPNYDGTGEEPVVLPSRIPNLLVNGSAGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+ +  + L D+P+  +E L+ +I GPDFPTGG I   R  IVE+YR GRG  ++R  
Sbjct: 187 LKEVIDGLVYLADHPDAELEDLMRFIPGPDFPTGGKI-MGRHGIVEAYRTGRGSIKMRGH 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              E VG     IV+TE+PYQV K+RL+EKIA L+  K+I  + D+RDES      V+  
Sbjct: 246 AEFERVGS-RTRIVITELPYQVNKARLVEKIAALVREKKIEGISDLRDESDRKGMRVVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R ++P++ +  ++  + ++  F + +  L     PQV+ L  IL  +L H+REV+ RR
Sbjct: 305 LRREVNPEITLNLLYKHTQLQDNFGVILLALVD-GQPQVLALKDILSHYLGHQREVITRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAIL 432
             + +     R+ I++GL IA  ++DE+I  IR            ++ F L+E Q  AIL
Sbjct: 364 CRYELSQAQARLHIVEGLRIALAHLDEVIQTIRRSRDVAEARLGLMAGFGLSEKQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  ++++E ++L+A  E++++LL   ++    +  E+  V++ F+     
Sbjct: 424 DMRLQRLTALERDKLENEFNDLVAAIERLEALLADEQKILAVVKEELLAVRDKFADP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALH 544
             RRT   E+   D     + +I +E   ++++N G+I+ +              ++ + 
Sbjct: 481 --RRT---ELVAEDADFNPEDLIPQEDAVIILTNDGYIKRMPPSVYRSQRRGGRGIAGVE 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDI 602
            K  D ++      T D +L  +  GK Y +    +     +  G A+  LI + + + +
Sbjct: 536 TKVQDFVRHLFVGKTHDYLLFFTERGKVYRVKVYEIPEAGRQARGTAVVNLIPVANGERV 595

Query: 603 VTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                         L +V+ KG        E  +  R G   L +   +++  V    G 
Sbjct: 596 TAVIPVTEYSGDAFLFMVTRKGIVKKTVLQEFDSARRDGLIALTLDEGDELVDVKITDGK 655

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             V +   N  ++ F   Q+  M R   GVR  S ++G +   +     +    +  + +
Sbjct: 656 SEVLLGTRNGMVIRFPEGQVRPMGRTAHGVRGISLREGDMVVGMDIVDPDD-QLLVVSEK 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +        +  RGG G +  +   R+G  +S
Sbjct: 715 GYGKVTPVKEFRVQSRGGFGLIAARVSGRNGPLVS 749



 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 6/147 (4%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G     P G +             I L     +V   + D   +LLVVS KG   + 
Sbjct: 662 TRNGMVIRFPEGQVRPMGRTA-HGVRGISLREGDMVVGMDIVDPDDQLLVVSEKGYGKVT 720

Query: 627 EESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
              E    +R G   +       +   + L +   G+ + +V ++  L+   ID+IP+  
Sbjct: 721 PVKEFRVQSRGGFGLIAARVSGRNGPLVSLSLVGRGEEILIVSKSGILIRMKIDEIPQFG 780

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R  +GVRL     G     + + + E 
Sbjct: 781 RQAQGVRLMRLAPGDAVVAVAWILPED 807


>gi|255009399|ref|ZP_05281525.1| DNA gyrase A subunit [Bacteroides fragilis 3_1_12]
 gi|313147158|ref|ZP_07809351.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135925|gb|EFR53285.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 845

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/758 (30%), Positives = 396/758 (52%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +DN ++++E+L+EY+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIY-GISGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  +   
Sbjct: 241 MRAKAEI-ESGQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++  ++ HR +V
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALV-NGRPKMLNLRDLIVYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF L+E Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMERFKLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E D ++ +   ++S+L   +     I  E+ EV+  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYDEVMKQIAYLESILADDEVCRKVIKDELLEVRAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    Y ++  +L  +  G        +     + G   + +  ++++  V    G
Sbjct: 599 RVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPRQNGVNAITIREDDRVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F    +  M R   GVR  +  D G   +  +IC K  E  + + 
Sbjct: 659 NNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDDDGQDEVIGMICIKDLETESVMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +  +        RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTMNITEKTGKLV 756


>gi|204928981|ref|ZP_03220124.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321525|gb|EDZ06724.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 878

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 392/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
            +E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LNEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|6006287|dbj|BAA84772.1| DNA gyrase A subunit [Bacteroides fragilis]
          Length = 845

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/758 (30%), Positives = 396/758 (52%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +DN ++++E+L+EY+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIY-GISGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  +   
Sbjct: 241 MRAKAEI-ESGQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++  ++ HR +V
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALV-NGRPKMLNLRDLIVYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMERFNLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     I  E+ EV+  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESILADDEVCRKVIKDELLEVRAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ  ++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNFLNIDSDDAVNAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    Y ++  +L  +  G        +     + G   + +  ++++  V    G
Sbjct: 599 RVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPRQNGVNAITIREDDRVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F    +  M R   GVR  +  D G   +  +IC K  E  + + 
Sbjct: 659 NNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDDDGQDEVIGMICIKDLETESVMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +  +        RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTMNITEKTGKLV 756


>gi|110678712|ref|YP_681719.1| DNA topoisomerase IV subunit A [Roseobacter denitrificans OCh 114]
 gi|109454828|gb|ABG31033.1| DNA topoisomerase IV, A subunit [Roseobacter denitrificans OCh 114]
          Length = 765

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/768 (51%), Positives = 532/768 (69%), Gaps = 27/768 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ +     ++    LR AL ERYL YALSTI  RA+PD RDG KPVHRRI++AM E+ 
Sbjct: 1   MNDVSDTKPVDLSE-PLRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELR 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+
Sbjct: 60  LSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDN 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARMT VAE +L+G++E+AVDFR+ Y+   +EPVV P++FPNLLANG+SGIAV
Sbjct: 120 PAASRYTEARMTAVAEAMLEGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+C+A + LI  P+   + LL+Y+ GPDFPTGG+IVE  E+I ++YR 
Sbjct: 180 GMATNIPPHNIAELCDACIHLIKTPDARDDTLLKYVPGPDFPTGGVIVEPPENIAQAYRT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+GGFR+R RW VE++GRG W IVVTEIPYQVQKS+LIEKIAELI  K+IP+L D+RDES
Sbjct: 240 GKGGFRLRCRWEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           A+D+R+++ P++RS+DPD+LM  +F   D+E RF LNMNVL  G  P+V  +  +L+ +L
Sbjct: 300 ADDIRMIIEPRSRSVDPDVLMGMLFRNCDLEVRFSLNMNVLIDGVTPKVCSMKEVLQAFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--- 422
            HR+EVL RRS+ R++ ID R+E+L+G +IA+LN+D +I IIR +D PK  +++      
Sbjct: 360 DHRQEVLQRRSTHRLEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMAEDWGRD 419

Query: 423 --------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                               LTE Q +AILN+RLRSLR+LEE ++  E + L+ E+  ++
Sbjct: 420 HPRALNEADYVPPVSTDDVTLTEVQAEAILNMRLRSLRRLEEMELVREQEALMEERAGLE 479

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            LL +   QW  I  ++R  K+ F K  D G RRTTF E +   +    +AMI++EPITV
Sbjct: 480 DLLENPGLQWASITEQLRATKKQFGKDWDGGARRTTFSE-AAVIEDVPIEAMIDREPITV 538

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V S  GW+R++  H      L FK+GD  +   HA TTDR+L+  ++G+ YT+ A +L  
Sbjct: 539 VCSQMGWVRAMTGHIDLGRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASSLPG 598

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           GRG GE ++L+IDL +  +IVT   +    KLLV SS G+ F+V E++++A TR GK  L
Sbjct: 599 GRGMGEPLRLMIDLPNEAEIVTILTHAPDRKLLVASSAGDGFVVPEADVVAQTRTGKQVL 658

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVIC 702
            V  + +  +   V GD VAVVGENRK+L+F ++ +PEM RGKGVRLQ YKDGG+SD   
Sbjct: 659 NVRGDTRAMICKPVNGDTVAVVGENRKVLVFPLEDLPEMGRGKGVRLQKYKDGGLSDATT 718

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           F   EGL+W+D AGR   RSE DL  W GKR   G + P+GFPR  KF
Sbjct: 719 FMRAEGLSWLDPAGR--TRSETDLAEWTGKRATAGRMAPRGFPRDNKF 764


>gi|269139681|ref|YP_003296382.1| DNA gyrase subunit A [Edwardsiella tarda EIB202]
 gi|267985342|gb|ACY85171.1| DNA gyrase subunit A [Edwardsiella tarda EIB202]
 gi|304559550|gb|ADM42214.1| DNA gyrase subunit A [Edwardsiella tarda FL6-60]
          Length = 878

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 387/793 (48%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG++GIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  I+IE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRAR  +E +   G   IVV EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYVRARAEIEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + M+  F +NM  L     P+++ L   L+ +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYTQTQMQVSFGINMVAL-HQGQPKLLTLKECLEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA +NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WALGNVAAMLARAGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +   +  +L S ++    I  E+  ++E F  +        T         
Sbjct: 475 LDEYKALLEQIAALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 EQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  ++ I        Y     + + ++ G 
Sbjct: 595 SRGRMYWMKVYQLPEASRGARGRPIINLLPLEADERITAILPVREYAEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRAAGIIAVNLNYGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAGEDRVVSLIVPHGEGA-ILTVTQNGYGKRSGVAEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 41.7 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 53/158 (33%), Gaps = 6/158 (3%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
             + M+      VV      +R++   +  +  +     D +   +  H    IL ++ +
Sbjct: 691 NDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGEDRVVSLIVPHGEGAILTVTQN 750

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G           +     + +  +     N  +V A   +   ++++++  G       S
Sbjct: 751 GYGKRSGVAEYPTKSRATQGVISIKVTERNGSVVGAVQVEDCDQIMMITDAGTLVRTRVS 810

Query: 630 EIIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           E+    R   G   ++ + +E +      V  V  + +
Sbjct: 811 EVSIVGRNTQGVILIRTAEDEHVVGLQRVVEPVDDEDL 848


>gi|261211022|ref|ZP_05925312.1| DNA gyrase subunit A [Vibrio sp. RC341]
 gi|260839997|gb|EEX66597.1| DNA gyrase subunit A [Vibrio sp. RC341]
          Length = 880

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/803 (32%), Positives = 402/803 (50%), Gaps = 62/803 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR+   P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E   +  +L S ++    I  E+  ++  FS +        T         A
Sbjct: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS----IDQ- 677
                 +       G   + +  ++ +  V    G+  + +  ++ K++ F+     D+ 
Sbjct: 655 KKTSLDQFANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKSGKVVRFNEKPIEDEE 714

Query: 678 ------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
                 +  M R   GVR     +G     +     +G   +      Y +         
Sbjct: 715 GNTKGGVRPMGRTAAGVRGIKLVEGDQVVSLIVPKNDGD-ILTVTENGYGKRTTLDEYPA 773

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+G  + +
Sbjct: 774 KSRATQGVVSIKVSERNGSVVGA 796


>gi|53713702|ref|YP_099694.1| DNA gyrase A subunit [Bacteroides fragilis YCH46]
 gi|60681973|ref|YP_212117.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343]
 gi|253565650|ref|ZP_04843105.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265764026|ref|ZP_06092594.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16]
 gi|52216567|dbj|BAD49160.1| DNA gyrase A subunit [Bacteroides fragilis YCH46]
 gi|60493407|emb|CAH08193.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343]
 gi|251945929|gb|EES86336.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263256634|gb|EEZ27980.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16]
 gi|301163411|emb|CBW22962.1| DNA gyrase A subunit [Bacteroides fragilis 638R]
          Length = 845

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/758 (30%), Positives = 397/758 (52%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +DN ++++E+L+EY+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIY-GISGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  +   
Sbjct: 241 MRAKAEI-ESGQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++  ++ HR +V
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALV-NGRPKMLNLRDLIVYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMERFNLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     I  E+ EV+  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESILADDEVCRKVIKDELLEVRAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    Y ++  +L  +  G        +     + G   + +  ++++  V    G
Sbjct: 599 RVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPRQNGVNAITIREDDRVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F    +  M R   GVR  +  D G   +  +IC K  E  + + 
Sbjct: 659 NNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDDDGQDEVIGMICIKDLETESVMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +  +        RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTMNITEKTGKLV 756


>gi|28189073|dbj|BAC56222.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   L+DNP+++  +++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F  + M+T F     +     VP+++ +  IL+ ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKQTQMQTNFSF-NMLAIQNGVPKILSVRQILESYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ RF L+E Q 
Sbjct: 359 VTRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMERFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELVALIADLTDILAKPERVVLIIKEELEEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTEL--MVGEVLSLEDEDLIEEADVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L  
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           N+ I T         +   L   + +G       +E     + G   L +  ++++  V 
Sbjct: 592 NESIQTIINVTKDQTADHYLFFATRQGIVKRTNVNEFSNIRQNGLKALNLKDDDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  M R   GVR    ++G         + +    +
Sbjct: 652 LTDGQADVIMGTKFGYSVRFAETDVRNMGRTATGVRGIKLREGDHLVGATI-VSDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   Y +           RGG G +  K   ++G    
Sbjct: 711 VLSENGYGKRTPASEYPTKGRGGKGIITLKVADKNGPLAG 750



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 70/221 (31%), Gaps = 12/221 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E                +      + +G ++    +         L AL+ K+ D L 
Sbjct: 589 LEENESIQTIINVTKDQTADHYLFFATRQGIVKRTNVNEFSNIRQNGLKALNLKDDDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +      ++ +       ++  I L     +V A +     
Sbjct: 649 NVFLTDGQADVIMGTKFGYSVRFAETDVRNMGRTATGVRG-IKLREGDHLVGATIVSDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV+S  G       SE     R GK  + +   +K   +  +  V GD  + V+ +  
Sbjct: 708 EVLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKNGPLAGLTTVQGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            ++  SI  I +  R   GV++    +              
Sbjct: 768 VIIRTSIANISQTGRSTMGVKVMRLDEEAKIMTFALVDAAD 808


>gi|327438157|dbj|BAK14522.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046]
          Length = 832

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/759 (32%), Positives = 413/759 (54%), Gaps = 28/759 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +   ++++ ++   ++  +L+YA+S I  RA+PD+RDG KPVHRRI++ M E+G    
Sbjct: 2   SDIQHGHIESRNITTEIKSSFLSYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTSD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKFHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE+RM+++A  +L+ +++D +D+   Y+  ++EP+V P+++PNLL NG SGIAVGMAT
Sbjct: 122 RYTESRMSKIAMEMLRDINKDTIDYGPNYDGSENEPLVLPARYPNLLVNGASGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP H++ E  +  LA+ DNP I+ E+L+E I GPDFPTGGII+  R  I  +Y  GRG 
Sbjct: 182 NIPPHHLGETIDGVLAVADNPSITTEELMEIIPGPDFPTGGIIL-GRSGIRRAYESGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  +E+   G   I+V E+PYQV K++LIEKIAEL+  K+I  + ++RDES  + 
Sbjct: 241 LTIRAKVEIEQASNGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRNG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  + ++++ ++F  + M++ F +NM  L     P+V+ L  +L  +L H++
Sbjct: 301 MRIVIEVRRDANANVVLNNLFKQTAMQSSFGVNMLALVD-GQPKVLSLKEVLYHYLEHQK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
            V+ RR++F ++  + R  IL+GL IA  +IDEII+IIR      + +P ++ RF+L+E 
Sbjct: 360 VVIKRRTAFELRKAEERAHILEGLRIALDHIDEIISIIRASRSGEEARPQLMERFNLSER 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +I++E   LL   +++ ++L    +    I  E+ ++KE +
Sbjct: 420 QAQAILDMRLVRLSGLEREKIEAEYQELLKLIDELKAILADEAKVVEIIRTEMTDIKERY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           S       RRT     +   +    + +I +E   + +++ G+I+          K    
Sbjct: 480 SDE-----RRTEIT--AGGLEMIEDEDLIPRENSVLTLTHNGYIKRLAANTYRSQKRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  +   E D ++  L   T D IL  ++ GK +      +       +   I  L+++
Sbjct: 533 GVQGMGTNEDDFVEHLLFTSTHDTILFFTSKGKVFRAKGYEIPEFGRQAKGLPIVNLLNI 592

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  + +        +      +  +  G        +       G   + +  ++ +  V
Sbjct: 593 DKGEHVTAMIRVTEFKEDAYFIFTTKTGVTKRTPVDQFANIRTNGLIAITLREDDDLISV 652

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
               G   + +   +  L+ F  D I  M R   GVR    ++G     +   +  G   
Sbjct: 653 HLTDGTKEIIIGTSDGMLVRFKEDDIRSMGRSAAGVRGIKLREGDFVVGMEI-LEPGQEI 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +      Y +   +    L  RGG+G    +   ++GK 
Sbjct: 712 LVVTENGYGKRTPESEYRLQSRGGLGLKTMQITDKNGKM 750



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 12/221 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A ++    +++   +  +  G  +              L A+  +E D L  
Sbjct: 592 IDKGEHVTAMIRVTEFKEDAYFIFTTKTGVTKRTPVDQFANIRTNGLIAITLREDDDLIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 T  I++ ++DG        ++ S      A    I L     +V   + +   +
Sbjct: 652 VHLTDGTKEIIIGTSDGMLVRFKEDDIRSMGRSA-AGVRGIKLREGDFVVGMEILEPGQE 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTG-DHVAVVGENRK 669
           +LVV+  G      ESE    +R G     +       KM  V  V G + + ++  N  
Sbjct: 711 ILVVTENGYGKRTPESEYRLQSRGGLGLKTMQITDKNGKMCAVKAVDGSEDIMLITINGM 770

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           L+   ++ I  + R  +GVRL    +G     +     E  
Sbjct: 771 LIRMDVNDISVIGRSTQGVRLIRLAEGEYVATVARVKKEED 811



 Score = 40.9 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 58/153 (37%), Gaps = 2/153 (1%)

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + +I      +V      IRS+   +  +  +  +EGD +           IL+++ +G 
Sbjct: 660 EIIIGTSDGMLVRFKEDDIRSMGRSAAGVRGIKLREGDFVVGMEILEPGQEILVVTENGY 719

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
               P          G  ++ +   + N  +      D +  +++++  G    ++ ++I
Sbjct: 720 GKRTPESEYRLQSRGGLGLKTMQITDKNGKMCAVKAVDGSEDIMLITINGMLIRMDVNDI 779

Query: 632 IANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
               R   G   ++++  E +  V +V  +  A
Sbjct: 780 SVIGRSTQGVRLIRLAEGEYVATVARVKKEEDA 812


>gi|292669307|ref|ZP_06602733.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia
           ATCC 43541]
 gi|292649148|gb|EFF67120.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia
           ATCC 43541]
          Length = 815

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/752 (33%), Positives = 383/752 (50%), Gaps = 13/752 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              +  V  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM   G+    
Sbjct: 4   DFGQGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSK 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGDSAAA R
Sbjct: 64  PYKKSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++AEL+L+ +D++ VDF D Y+  + EP V P+KFP LL NGT+GIAVGMAT+
Sbjct: 124 YTEVRMSKIAELMLRDIDKETVDFVDNYDGSEKEPSVLPAKFPQLLVNGTAGIAVGMATN 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L LIDNPE +IE+L+  I GPDFPT G ++   E I ++Y  GRG  
Sbjct: 184 IPPHNMVEVINGTLMLIDNPETTIEELMGVIKGPDFPTAG-LILGTEEIRKAYTTGRGVI 242

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RAR  +E +  G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES     
Sbjct: 243 KMRARAHIETMSSGKPRILVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++  ++  + ++  F + M  L     P +M L  IL  +++H+  
Sbjct: 303 RIVIELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVD-GQPVIMNLKQILGHYISHQEN 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ + +   + R  IL+GL IA  ++D +I  IR        +  ++  F LTE Q
Sbjct: 362 VITRRTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQ 421

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+LRL+ L  LE  +I+ E   +L   E++  +L    +    I  E+ EV++ + 
Sbjct: 422 AQAILDLRLQRLTGLEREKIEEEYQEVLRMIEELKGILADRMKVLAIIKDELIEVRDKYG 481

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                               A     +       +        R  +   V +  +  KE
Sbjct: 482 DERRTEITFDASEMDITDLIAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKGMGTKE 541

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D +   L   T   IL  +  G+ + L A  +       +  AI  L+ +  ++ I   
Sbjct: 542 TDIVSDLLITTTHHDILFFTNRGRVFVLKAYEIPESGRQAKGTAIINLLAVEADERITAV 601

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-V 661
                +     L + + +G       +E     + G   + +  E+++  V    G++ +
Sbjct: 602 IQVREFKPDRFLFLGTKRGVVKKTPLAEFANIRKSGLKAVNLDEEDELIGVKFTDGENRI 661

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +     K + F    +  M R  +GVR     DG     +     +    +      Y 
Sbjct: 662 MLGTRLGKAIAFPESGVRSMGRVTRGVRGIMLADGDEVVAMDILKSDSE-VLTVTEGGYG 720

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +           RGG G +  K   ++G  + 
Sbjct: 721 KRTAAGEYRTQTRGGKGLINMKVTEKTGPVVG 752



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L    ++V   +  S  ++L V+  G        E    TR GK  + +   EK   +
Sbjct: 691 IMLADGDEVVAMDILKSDSEVLTVTEGGYGKRTAAGEYRTQTRGGKGLINMKVTEKTGPV 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  V  D  + ++     ++  S+++I  +SR  +GVRL +  +      + 
Sbjct: 751 VGIRVVREDQELMLITTEGIVIRTSVNEISRISRNTQGVRLMTIAENDRVASMA 804


>gi|94264230|ref|ZP_01288025.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
 gi|93455341|gb|EAT05545.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
          Length = 850

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/778 (32%), Positives = 409/778 (52%), Gaps = 41/778 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I+++     E++  VS+   L + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+ 
Sbjct: 4   ITSNLPDSPEDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELN 63

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG++DGD 
Sbjct: 64  NYHNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSVDGDP 123

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARMT++ + ++  +D++ VDF  TY+   +EP+VFP++ PNLL NG++GIAV
Sbjct: 124 PAAMRYTEARMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSAGIAV 183

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+ +  + +I++P I++  L+E I GPDFPTGG  +  R  I E+Y  
Sbjct: 184 GMATNIPPHNLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGG-FICGRAGIREAYET 242

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R+R  +E+   G   IV+TEIPYQ  KS L+EKIA LI  KRI  + + RDES
Sbjct: 243 GRGSLLIRSRHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFRDES 302

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +    ++++  ++ ++ ++  F + M  +   R P+V+ L  IL+ ++
Sbjct: 303 DRHGMRIVIELKKDEIAEVVINQLYKMTPLQKSFGIIMLSIVNMR-PEVLNLRQILENFI 361

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            HR+ V++RR+++ ++  + +  +L+GL IA  N+DE++A+I+    P+       +RF 
Sbjct: 362 LHRKTVVYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINRFG 421

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q  AIL +RL  L  LE  +I  E D L+ E   +  +L         I  E   +
Sbjct: 422 LSAIQAQAILEMRLHRLTGLEREKIIEEYDALMKEIIWLRQVLGDESLVMKIIREEFEAI 481

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           +E +        RRT   +   A    L + MI +E + V +++ G+I+     +     
Sbjct: 482 RETYGD-----DRRTEIID---APDEILPEDMIAREEMVVTVTHAGYIKRNPVDTYRSQR 533

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                +      + D +     A T D +L  S  G+ +      +        G+A+  
Sbjct: 534 RGGKGIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFWRKVYEIPQAGRLARGKAVVN 593

Query: 593 LIDLNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           L++L   + +      DS          +L+ + KG       SE     ++GK  L + 
Sbjct: 594 LLELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKKTALSEFARPLKRGKIALTIR 653

Query: 646 SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG------- 696
            ++++      TGD  V ++      + F  D I  M RG  GVR  +   G        
Sbjct: 654 EDDEILGASLTTGDNEVLLLSRRGMAVRFHEDDIRAMGRGASGVRGITLAAGDEQKGIPA 713

Query: 697 --ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +         + +  +   + +        L +RGG G +  K   R+G+ + 
Sbjct: 714 DELIGLQVLSGDPEASILVVSENGFGKRSKVDEYRLIRRGGKGVMAIKASERNGEVVG 771



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDH 660
               D    +LVVS  G     +  E     R GK  + +     + E + +      D 
Sbjct: 721 VLSGDPEASILVVSENGFGKRSKVDEYRLIRRGGKGVMAIKASERNGEVVGMSQVCDDDQ 780

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           V ++    +++   +  I  + R  +GVRL +  +      +
Sbjct: 781 VMMITNRGQIIRMPMQGIRVIGRSTQGVRLFNLDNEEKVVAL 822


>gi|168229633|ref|ZP_02654691.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194468612|ref|ZP_03074596.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194454976|gb|EDX43815.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205335592|gb|EDZ22356.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 878

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|16765599|ref|NP_461214.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56412831|ref|YP_149906.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161613010|ref|YP_001586975.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167549737|ref|ZP_02343496.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|168242385|ref|ZP_02667317.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261717|ref|ZP_02683690.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168466034|ref|ZP_02699904.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168818000|ref|ZP_02830000.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194445296|ref|YP_002041533.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194450393|ref|YP_002046326.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197248208|ref|YP_002147228.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263978|ref|ZP_03164052.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361764|ref|YP_002141400.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|207857691|ref|YP_002244342.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224583243|ref|YP_002637041.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|17865733|sp|P37411|GYRA_SALTY RecName: Full=DNA gyrase subunit A
 gi|16420810|gb|AAL21173.1| DNA gyrase, subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56127088|gb|AAV76594.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161362374|gb|ABX66142.1| hypothetical protein SPAB_00716 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403959|gb|ACF64181.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408697|gb|ACF68916.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|195631306|gb|EDX49866.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197093240|emb|CAR58685.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197211911|gb|ACH49308.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197242233|gb|EDY24853.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205325309|gb|EDZ13148.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205338650|gb|EDZ25414.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205344910|gb|EDZ31674.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349514|gb|EDZ36145.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206709494|emb|CAR33838.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224467770|gb|ACN45600.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247480|emb|CBG25307.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994359|gb|ACY89244.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158830|emb|CBW18343.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|320086709|emb|CBY96481.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321223028|gb|EFX48099.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322617024|gb|EFY13930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617670|gb|EFY14569.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624700|gb|EFY21529.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630249|gb|EFY27019.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634430|gb|EFY31163.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639140|gb|EFY35832.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640137|gb|EFY36803.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645775|gb|EFY42299.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651550|gb|EFY47925.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656111|gb|EFY52410.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659463|gb|EFY55710.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665925|gb|EFY62108.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669837|gb|EFY65978.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673822|gb|EFY69919.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678580|gb|EFY74636.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683624|gb|EFY79638.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687700|gb|EFY83670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322715321|gb|EFZ06892.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130602|gb|ADX18032.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323196203|gb|EFZ81360.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198371|gb|EFZ83473.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204191|gb|EFZ89202.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208577|gb|EFZ93516.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212343|gb|EFZ97166.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218250|gb|EGA02960.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222992|gb|EGA07341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227427|gb|EGA11592.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323232245|gb|EGA16348.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235722|gb|EGA19806.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241118|gb|EGA25154.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244860|gb|EGA28862.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248571|gb|EGA32502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251591|gb|EGA35459.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323263082|gb|EGA46628.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323268142|gb|EGA51619.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270765|gb|EGA54203.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326628480|gb|EGE34823.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332989205|gb|AEF08188.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 878

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|37514959|dbj|BAC98436.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/789 (30%), Positives = 381/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+R G KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRGGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE ++++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACHHLLANPEATVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L  +LAHRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDTFGMNMVALVD-GQPKLLNLKEMLVCFLAHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE I II+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       +++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPMREFSADKYVFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G+H V +  ++ K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  + + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+G+ +++
Sbjct: 788 ERNGRVVAA 796



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 738 GQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|21228522|ref|NP_634444.1| DNA gyrase subunit A [Methanosarcina mazei Go1]
 gi|20907009|gb|AAM32116.1| DNA gyrase, subunit A [Methanosarcina mazei Go1]
          Length = 900

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/755 (32%), Positives = 402/755 (53%), Gaps = 29/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  + +   ++  Y+ YA+S I  RA+PD RDG KPVHRRI+ +M+E G+     +KKS
Sbjct: 17  GVTPILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMNESGITHDKPYKKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD +VYD++VR+ Q F  RYPLI GQGNFG+IDGDSAAA RYTE R
Sbjct: 77  ARIVGDVLGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEVR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++AE +L  ++++ V F   Y+    EP V P++ PNLL NG++GIAVGMAT++P HN
Sbjct: 137 MDRIAEEMLVDIEKETVPFIPNYDGSLKEPEVLPARLPNLLINGSTGIAVGMATNMPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  L LI+NPE  I +L+  I GPDFPTG  I+     I  +Y  GRG  R+RA 
Sbjct: 197 ISEVIDGILMLIENPETQISELMTVIKGPDFPTGAHIL-GTAGIRSAYMTGRGPIRMRAV 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             ++E+ +    I+VTE+PYQV K++LIE IA+L+  K I  + D+RDES  +   V+  
Sbjct: 256 AEIQELKKDRQQIIVTELPYQVNKAKLIENIAQLVREKVINGISDLRDESDREGIRVVVE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +R ++P++++  ++  + M T F +    L     P+ + L  +L+ +L +R E++ +R
Sbjct: 316 LSRGVNPNVVLNQLYKHTQMATTFGVINLALVD-GKPKELNLKQLLEIYLEYRMEIIQKR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAIL 432
           + + ++  + R  IL+GL IA  NID ++A+I+               F+L E Q  AIL
Sbjct: 375 TLYDLRKSEERAHILEGLRIALDNIDAVVALIKGSANADQAKQGLIDNFALDEVQAKAIL 434

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE  +I  EL+ L+ + E++  +L S + ++  I  E+ E+K+ +      
Sbjct: 435 EMRLQRLTGLETRKILDELEALVKQIEELRKILASDELKYEIIRTELSELKDKYGD---- 490

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALH 544
             RRT         +    + +I +E + V I+N G+I+ +   +          +  + 
Sbjct: 491 -IRRTRIV---HNTENVTDEDLIPEEDVVVTITNSGYIKRIPLDTYTMQRRGGRGIIGME 546

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDI 602
            KE D ++    + T + IL  +  G+ Y      +     +  G+AI  L++L   + +
Sbjct: 547 MKEEDFVENLFISSTHNYILFFTNRGRLYWQKVYEIPEGSRQSRGKAIVNLLELQEGEMV 606

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
                   +     L + +  G       SE     R G   + +   +++  V+   G 
Sbjct: 607 NAMISVEEFAEDKYLFMATRAGTVKKTPLSEFRNPRRAGIIAVSLDEGDELVKVLLTDGK 666

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +V +  K + FS + +  M R  +GVR  + +      V    + E  T +     
Sbjct: 667 QEIMMVSKKGKAIRFSEEDVRPMGRTARGVRGMTLEGPDDEVVSLDLVDETTTLLTVTDN 726

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +        + +RGG G +      R+G F+S
Sbjct: 727 GFGKRTEYSQYPVHRRGGKGVITIVTNLRNG-FVS 760



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 7/152 (4%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 I+++S  GKA      ++         ++ +     + ++V+  + D T  LL 
Sbjct: 663 TDGKQEIMMVSKKGKAIRFSEEDVRPMGRTARGVRGMTLEGPDDEVVSLDLVDETTTLLT 722

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFL----KVSSEEKMKLVVKV-TGDHVAVVGENRKLL 671
           V+  G     E S+   + R GK  +     + +   +  V  V   D +        ++
Sbjct: 723 VTDNGFGKRTEYSQYPVHRRGGKGVITIVTNLRNG-FVSNVKSVAEDDELMFTSAEGIII 781

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
                 I    R  +GVR+ + K G     + 
Sbjct: 782 RIPAKDISIQGRNTQGVRVMNIKSGDKVGGMA 813



 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 35/99 (35%), Gaps = 2/99 (2%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L ++ +G             R  G+ +  ++    N  +          +L+  S++G
Sbjct: 719 TLLTVTDNGFGKRTEYSQYPVHRRGGKGVITIVTNLRNGFVSNVKSVAEDDELMFTSAEG 778

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
               +   +I    R   G   + + S +K+  + ++  
Sbjct: 779 IIIRIPAKDISIQGRNTQGVRVMNIKSGDKVGGMARIKN 817


>gi|146312441|ref|YP_001177515.1| DNA gyrase subunit A [Enterobacter sp. 638]
 gi|145319317|gb|ABP61464.1| DNA gyrase subunit A [Enterobacter sp. 638]
          Length = 888

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  ++  +++D VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELMADLEKDTVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ EI++E L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNITEVINGCLAYIDDEEITVEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDILSAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAGLVAQP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WALGNVSAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V++ F  +        T         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREELELVRDQFGDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NREDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +        G   + ++  +++  V   +G D V +     K++ F  + +  M
Sbjct: 655 VKKTALTGFSRPRSAGIIAINLNEGDELIGVDLTSGSDDVMLFSAAGKVVRFKENAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +   +       RG  G + 
Sbjct: 715 GRTATGVRGIRLAGEDSVVSLIIPRGEGA-ILTVTQNGYGKRTAEGEYPTKSRGTQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              M+      VV      +R++   +  +  +     DS+   +       IL ++ +G
Sbjct: 692 DDVMLFSAAGKVVRFKENAVRAMGRTATGVRGIRLAGEDSVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                  G   +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|77163709|ref|YP_342234.1| DNA gyrase, subunit A [Nitrosococcus oceani ATCC 19707]
 gi|254435120|ref|ZP_05048627.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27]
 gi|76882023|gb|ABA56704.1| DNA gyrase subunit A [Nitrosococcus oceani ATCC 19707]
 gi|207088231|gb|EDZ65503.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27]
          Length = 846

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/796 (33%), Positives = 405/796 (50%), Gaps = 65/796 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
             + + V  V++   ++  YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+  
Sbjct: 2   DEIAQEVFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  R PLI GQGNFG+IDGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+E + EP V P++ PNLLANG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKIAHELLADLNKETVDFVPNYDESEHEPAVLPTRIPNLLANGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+  A +ALID+P +SI  L+ +I GPDFPT G IV     I E+Y  GRG  
Sbjct: 182 IPPHNLGELLSACIALIDDPALSIAGLMSHIPGPDFPTAG-IVNGARGIQEAYLTGRGRI 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  VE + G G   I+VTE+PY V K+RL+EKI  L+  K+I  +  +RDES +D 
Sbjct: 241 FMRARTHVETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKEKKIVGIVGLRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    RS  P++++  +++ + +++ F +NM  L     PQ++ L   L+ +L HR+
Sbjct: 301 MRMVVELRRSEMPEVVLNQLYLHTQLQSVFGINMVALVD-GQPQLLNLKLALEAFLRHRQ 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------- 416
           EV+ RR+ F ++    R  +L+GL IA  NID IIA+I+    P                
Sbjct: 360 EVVTRRTMFELRKARERAHVLEGLAIALANIDSIIALIKASSSPAEARDGLIARFWPPGV 419

Query: 417 ------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+  Q  AIL +RL  L  LE+ +I  E +
Sbjct: 420 VIDMLQRAGAESSQPEKLETAYGLQQDGYRLSPAQAQAILEMRLHRLTGLEQSKIIDEYE 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++     +  +L + ++    I  E  E++E +S       RRT   E+         +
Sbjct: 480 QVIIFILGLLEILANPERLMAVIREEFMEMREQYSTP-----RRT---EIQDNHVDLRLE 531

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I++E + V +S+ G+         RS K      SA   KE D +     A+T D +L
Sbjct: 532 DLIQEENVVVTLSHSGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLL 591

Query: 565 LLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S+ GK Y      L        G+    L+ L   + I T      ++    + +V++
Sbjct: 592 CFSSRGKVYWKKVYELPQGSRVARGKPFVNLLPLEEGERINTVLSIREFEKDKYIFMVTA 651

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
            G       ++       G   L +   +++       G   + +     K++ FS   +
Sbjct: 652 SGVVKKTSLADFSRPRSSGIIALDLREGDQLVGADLTDGVQEIMLFSSGGKVIRFSERDV 711

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             + R  +GV+           VI   I    T + +    Y +        L  RGG G
Sbjct: 712 RPVGRTARGVKGMELPSEHR--VIALIIAASGTILTATELGYGKRTAIAEYRLQGRGGRG 769

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +  PR+G+ + +
Sbjct: 770 IISIRTTPRNGEVVGA 785



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S+ GK       ++         +   ++L     ++   +  S   +L  +  
Sbjct: 692 QEIMLFSSGGKVIRFSERDVRPVGRTARGV-KGMELPSEHRVIALIIAASGT-ILTATEL 749

Query: 621 GNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       +E     R G+  + +     + E +  V     D V ++ +   L+   +D
Sbjct: 750 GYGKRTAIAEYRLQGRGGRGIISIRTTPRNGEVVGAVQVEKEDEVVLISDGGTLIRTPVD 809

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            I  M R  +GV+L + ++G     I   + +G 
Sbjct: 810 NISLMGRNTQGVKLINLQEGERLVGIERIVEDGE 843


>gi|315163336|gb|EFU07353.1| DNA gyrase, A subunit [Enterococcus faecalis TX0645]
          Length = 833

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 68/185 (36%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++     ++ F++D + +  R   GVRL   +DG  
Sbjct: 741 TANITEKNGPLAGLTTVNGNEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAK 800

Query: 698 SDVIC 702
              + 
Sbjct: 801 VVTMA 805


>gi|171316171|ref|ZP_02905395.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5]
 gi|171098680|gb|EDT43475.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5]
          Length = 867

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/789 (31%), Positives = 378/789 (47%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L++N + +I++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLNNADATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRATTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVRDMLTRA 427

Query: 415 -----------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +             +        
Sbjct: 488 REVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + +S G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMATSLGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  ++ K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    +DG     +     E  T + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 788 ERNGKVVAA 796



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 738 GQQVIALLVAGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGKVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|256960819|ref|ZP_05564990.1| DNA gyrase A subunit [Enterococcus faecalis Merz96]
 gi|256951315|gb|EEU67947.1| DNA gyrase A subunit [Enterococcus faecalis Merz96]
          Length = 832

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  +  V GD  + ++     ++ F++D + +  R   GVRL   +DG 
Sbjct: 741 TANITEKNGP-LAGLTTVNGDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGA 799

Query: 697 ISDVIC 702
               + 
Sbjct: 800 KVVTMA 805


>gi|227518103|ref|ZP_03948152.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104]
 gi|293382657|ref|ZP_06628585.1| DNA gyrase, A subunit [Enterococcus faecalis R712]
 gi|293387931|ref|ZP_06632467.1| DNA gyrase, A subunit [Enterococcus faecalis S613]
 gi|312908809|ref|ZP_07767748.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512]
 gi|312979549|ref|ZP_07791231.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516]
 gi|227074437|gb|EEI12400.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104]
 gi|291079963|gb|EFE17327.1| DNA gyrase, A subunit [Enterococcus faecalis R712]
 gi|291082668|gb|EFE19631.1| DNA gyrase, A subunit [Enterococcus faecalis S613]
 gi|310625247|gb|EFQ08530.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512]
 gi|311287731|gb|EFQ66287.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516]
          Length = 833

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  +  V GD  + ++     ++ F++D + +  R   GVRL   +DG 
Sbjct: 741 TANITEKNGP-LAGLTTVNGDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGA 799

Query: 697 ISDVIC 702
               + 
Sbjct: 800 KVVTMA 805


>gi|198243898|ref|YP_002216341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197938414|gb|ACH75747.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
          Length = 878

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|309774994|ref|ZP_07670010.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917248|gb|EFP62972.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53]
          Length = 837

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/761 (34%), Positives = 417/761 (54%), Gaps = 31/761 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +E +  V +   +   +L Y++S I +RA+PD+RDG KPVHRRI+HAM+E+G+    
Sbjct: 2   DLNKEKLIQVDISKEMRTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  PFKKSARIVGEVIGKYHPHGDIAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +++ ++++ VDF   Y+ E++EP V P++FPNLL NG+ GIAVGMAT+
Sbjct: 122 YTEARMSKIAMEMMKDINKNTVDFIPNYDNEETEPSVLPARFPNLLVNGSVGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ E  +A  A++DNP+IS+ + +  YI GPDFPTGGII+  R  I +++  GRG 
Sbjct: 182 IPPHNLTETIDATFAIMDNPDISVVELMDNYIKGPDFPTGGIIL-GRAGIRQAFETGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VR++  +E++G G   IVVTE+PYQV K+ LI KIA+L+  K+I  +  + DES  + 
Sbjct: 241 ILVRSKHHLEDMGNGKTRIVVTEVPYQVNKANLITKIADLVREKQIEGITYLNDESNREG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +   PD+++  ++ ++ ++T F +NM  L   + P+ M +   L+ ++ H+ 
Sbjct: 301 IRIVIELRKDAQPDVILNQLYRMTQLQTSFGVNMLALVD-KTPKQMGIREALQHYVDHQI 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
           +V  RR+ F ++  + R  IL+GL IA  +IDEII +IR+           + +F LTE 
Sbjct: 360 DVTVRRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARAGLMEQFKLTEI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL +RLR L  LE  +I++E   L+A    +  +L +  +  + I  E+ EVK  F
Sbjct: 420 QANAILEMRLRRLTGLERDKIENEYRELMATIADLRDILANHDRVLSIIRDELTEVKNRF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT   E   AD     + +I  E + + ++  G+I+ + + +         
Sbjct: 480 GDE-----RRTEISE---ADYDMQDEDLIPVEDVVITMTTNGYIKRMPTDTYRTQNRGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  +   E D + + +   T D ++L +  GK Y +    + +     +   +  L++L
Sbjct: 532 GVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSGRTAKGLPVVNLLNL 591

Query: 597 NHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  + +              LL V+  G       SE  +  + GK  + +   +++  V
Sbjct: 592 DKEEKVRALVPVRPDSESSFLLFVTKNGLVKRTPMSEFDSIRQNGKIAITLREFDELVGV 651

Query: 654 VKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            + TGD  + + G N K + F  D I  M R   GV+  +    G   V      EG   
Sbjct: 652 KETTGDDEIIIAGSNGKAVRFHEDDIRAMGRTASGVKGFNV--DGSIVVGAATSKEGTHL 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +   Y +        L  RG  G        ++G+ +S
Sbjct: 710 LAVSENGYGKRTAIEEYRLTTRGAKGVKTINVTNKTGELVS 750



 Score = 67.5 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 5/113 (4%)

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV-SSEEKMKLVVKVTG 658
           +V A        LL VS  G        E    TR  KG   + V +   ++  V  V G
Sbjct: 697 VVGAATSKEGTHLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINVTNKTGELVSVRAVNG 756

Query: 659 DHV-AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           D    +V ++  ++  S+  I   SR  +GV+L +         +     E  
Sbjct: 757 DEDAMIVTDSGIIIRISVGDIGIYSRNTQGVKLINVSGDESVAKVAIVEKEED 809


>gi|153812025|ref|ZP_01964693.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174]
 gi|149831924|gb|EDM87010.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174]
          Length = 848

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/774 (30%), Positives = 399/774 (51%), Gaps = 39/774 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + +  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+ 
Sbjct: 1   MEDN---IFDKIHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +L  +++D VDF+  ++E + EPVV PS++PNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E+  A + +IDN      + +IE+LLE + GPDFPTG  I+     I 
Sbjct: 178 GMATNIPPHNLREVISAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + D
Sbjct: 237 EAYRTGRGKIRVRAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKIDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR---VPQVMPL 357
           + D S+ +   +     +  + ++++  ++  + ++  F + M  L        P+V+ L
Sbjct: 297 LNDHSSREGMRICIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTL 356

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--- 414
             +LK +LAH+ +V+ RR+ + +     R  IL+GLL A  NIDE+I IIR     +   
Sbjct: 357 PEMLKHYLAHQEDVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAK 416

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++ RF LT+ Q  AI+++RLR+L  LE  ++++E   L+ +  K+ ++L         
Sbjct: 417 QELMDRFELTDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRKLKAILADRNTLLRV 476

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  EI  + E +        RRT              + MI +E   + ++  G+I+ + 
Sbjct: 477 IREEILAISEKYGD-----DRRTAI---GFDAFDISMEDMIPRENTVITMTKLGYIKRMT 528

Query: 535 SHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
             +          +  +   + D ++  +   T   ++  +  G+ Y L A  +      
Sbjct: 529 VDNFRSQNRGGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVYRLKAYEIPEAGRT 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G AI  L+ L   + I        ++    L++ + KG        +     + G   
Sbjct: 589 ARGTAIINLLQLMPGERITAVIPISKFEEGQYLMMATRKGLVKKTPIQDYANVRKIGLAA 648

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           + +  ++++  V        + +V +  + + F    +    R   GVR  +  DG    
Sbjct: 649 ISLRDDDELIEVKATDDKKDIILVTKYGQCIRFKESDVRSTGRVSMGVRGINLLDGDEVV 708

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     +G   +  +     +  +        RGG G    K   ++G  + +
Sbjct: 709 AMQLN-TQGYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCYKITEKTGNVIGA 761



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 59/170 (34%), Gaps = 6/170 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
               + L+A+  ++ D L           I+L++  G+       ++ S       ++ +
Sbjct: 640 NVRKIGLAAISLRDDDELIEVKATDDKKDIILVTKYGQCIRFKESDVRSTGRVSMGVRGI 699

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
             L+ ++ +V   +      LLVVS  G       SE     R GK      +   +   
Sbjct: 700 NLLDGDE-VVAMQLNTQGYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCYKITEKTGNV 758

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
           +        + + ++     ++      I  + R   GV+L +  DG   
Sbjct: 759 IGAKAVNEENEIMMITTEGIIIRLQCSDISILGRITSGVKLINLSDGVTV 808


>gi|220930857|ref|YP_002507765.1| DNA gyrase, A subunit [Halothermothrix orenii H 168]
 gi|219992167|gb|ACL68770.1| DNA gyrase, A subunit [Halothermothrix orenii H 168]
          Length = 816

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 406/760 (53%), Gaps = 30/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            +    V  V +   ++  YL YA+S I  RA+PD+RDG KPV RRI++A+ ++G+    
Sbjct: 4   DINNGKVLEVDIENEMKGAYLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPNK 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             KKSAR+VGEV+GK HPHGD +VYD++VR+AQ F  RYPL+ G GNFG+IDGDSAAA R
Sbjct: 64  PHKKSARVVGEVLGKYHPHGDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSIDGDSAAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L+ +D++ VDF   ++E   EP V P++ PNLL NG SGIAVGM+T+
Sbjct: 124 YTEVRMARLTTELLRDIDKNTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMSTN 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNP++ ++ L++ I GPDFPTGG I+  ++ I ++Y+ GRG  
Sbjct: 184 IPPHNLGEVIDGVVALIDNPDLEVKDLMKIIKGPDFPTGG-IIMGKDKIYQAYKTGRGRL 242

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VR +  +EE   G   I++TEIPYQV K+RL+EKIA L+  ++I  + D+RDES     
Sbjct: 243 KVRGKARIEEDKNGKSKIIITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRGL 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +   P +++  ++  + ++  + + M  L    +P+V+ L  +L  +L H++E
Sbjct: 303 RIVIELKKGTVPKVILNRLYKYTQLQVTYGVIMLALVD-GMPRVLTLKELLNHYLEHQKE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQ 427
           V+ RR+ +++   + R  IL+GL IA  NID+I+ +IR               F+LTE Q
Sbjct: 362 VVTRRTKYQLDKAEARAHILEGLRIALANIDDIVQLIREAPDVDTARRGLIENFNLTEKQ 421

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL +RL+ L  LE  +I++E   L  +     S+L    +    I  E+ E+KE F 
Sbjct: 422 AEAILRMRLQRLTGLERDKIEAEYKELKEKIAYYRSILADEGKLLGIIKDELLELKEKFQ 481

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                  RRT   E+S        + +I +E + + +++ G+I+ +        +     
Sbjct: 482 DE-----RRT---EISIQAVDLDVEDLIPEEQVVITLTHHGYIKRMPIDIYRSQRRGGKG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           +  ++ KE D ++      T    L  +  GK Y L    +     +  G AI  L++L 
Sbjct: 534 IIGINTKEEDFVEHVFTTSTHHYFLFFTNKGKVYRLRVFEIPQASRQARGTAIVNLLELE 593

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I T      +D    L++V+  G       +E  +    G   L +  E+++  V 
Sbjct: 594 EEERITTVIPIREFDEERYLVMVTRNGMIKKTPLAEYES-RYTGLIGLTLRDEDELIDVK 652

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
              G+  V +V    K + F  +++  M R   GV+  + +DG     +     EG   +
Sbjct: 653 YTDGNQSVIIVTHRGKAIHFKENEVRSMGRTAMGVKAITLEDGDYVVGMGV-DSEGDDLL 711

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        L  RGG G +      ++G    
Sbjct: 712 VITEKGYGKRTPLEEYRLQSRGGKGLITANITEKNGNLAG 751



 Score = 84.1 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 6/178 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L  L  ++ D L    +      +++++  GKA       + S       +   I L  
Sbjct: 636 GLIGLTLRDEDELIDVKYTDGNQSVIIVTHRGKAIHFKENEVRSMGRTAMGV-KAITLED 694

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVK 655
              +V   V      LLV++ KG        E    +R GK  +  +       +  V  
Sbjct: 695 GDYVVGMGVDSEGDDLLVITEKGYGKRTPLEEYRLQSRGGKGLITANITEKNGNLAGVKV 754

Query: 656 VTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
           V  DH + ++     ++   ++ I  + R   GV++   ++G     +     E    
Sbjct: 755 VREDHDLILITSEGIIIRTRVEGISRLGRNTLGVKVIRLEEGDRVVSLARISPEEKDI 812


>gi|110638083|ref|YP_678292.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406]
 gi|110280764|gb|ABG58950.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406]
          Length = 865

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/763 (30%), Positives = 394/763 (51%), Gaps = 18/763 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+       N+  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G
Sbjct: 1   MSDQPISGGTNIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMEDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           + +  A+KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RYP++ GQGNFG++DGDS
Sbjct: 61  VHYNKAYKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYPMVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ ++AE +L  +++D VDF+  +++   EP V PSK PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARLKRIAEEMLSDINKDTVDFQPNFDDSLQEPSVLPSKVPNLLINGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ E+ +  +A IDN +I+I +L+ ++ GPDFPTG  I    + I  ++  
Sbjct: 181 GMATNMAPHNITEVIDGVIAFIDNNDITIPELMVHVKGPDFPTGATIY-GYQGIRSAFET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R+R  +E    G   I+V+EIPY V K+ +IEKIA ++  K+I  + DIRDES
Sbjct: 240 GRGRIVLRSRSTIETTSTGKEQIIVSEIPYMVNKAAMIEKIAAMVNEKKIEGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++F   R    ++++ ++F  S +++ F +N   L     P  + L  ++  ++
Sbjct: 300 DREGMRIVFDLKRDAIANVVLNNLFKYSQLQSSFSVNNVCLVK-GRPMTLNLKEMIMYFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            HR EV+ RR+ F +   ++R  IL+G LIA  ++DE+I +IR    P+      ++ F 
Sbjct: 359 EHRHEVVTRRTQFELNEAEKRAHILQGYLIALDHLDEVIKLIRESRDPEAARIGLMTNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q  A+L+LRL+ L  +E  +I  E + ++A   ++  +L S + +   I  E+ E+
Sbjct: 419 MSEIQAKAVLDLRLQRLTGMERDKIIKEYEEIMALINRLKEILASKELRMEIIKQELDEM 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +           +            Q  +       +  +     R+     V    
Sbjct: 479 KERYGDKRRSDIVHASDDINIEDMIPEEQMVITISHEGYIKRTALSEYRTQGRGGVGSKG 538

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
              KE D  +    A T + +L  +  GK + L    +  G    +  AIQ +I +    
Sbjct: 539 AGSKESDFTEHLFVASTHNYLLFFTEYGKVFWLKVYEIPEGGKTTKGRAIQNVIQIEPGD 598

Query: 601 DIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            + T           Y +   L++ + +G                G   + +   +++  
Sbjct: 599 KVRTVINVKTLTDDDYINNNYLVMCTEQGVIKKTTLEAYSRPRSGGINAITIHEGDRLLD 658

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGL 709
           V   +G D + +   + + + F+  ++  M R   GV+  +   D  +   +        
Sbjct: 659 VKMTSGSDELVIALRSGRAIRFNESKVRPMGRTAAGVKGVTLAHDKDVVVGLVAVSSPDT 718

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           T +  + + Y +  +     +  RGG G        ++G  +S
Sbjct: 719 TLLVVSEKGYGKRSDIEDYRVTNRGGKGVKTLNISEKTGDLVS 761



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 77/214 (35%), Gaps = 8/214 (3%)

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT     +  D   +    +       VI         +  S  ++A+   EGD L    
Sbjct: 601 RTVINVKTLTDDDYINNNYLVMCTEQGVIKKTTLEAYSRPRSGGINAITIHEGDRLLDVK 660

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTCK 613
               +D +++    G+A       +        A    + L H++D+V     V      
Sbjct: 661 MTSGSDELVIALRSGRAIRFNESKVRPMGRTA-AGVKGVTLAHDKDVVVGLVAVSSPDTT 719

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRK 669
           LLVVS KG     +  +     R GK    ++  EK   +  ++ V     + ++ ++  
Sbjct: 720 LLVVSEKGYGKRSDIEDYRVTNRGGKGVKTLNISEKTGDLVSILGVNDQYQIMIINKSGI 779

Query: 670 LLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
            +  ++  +  M R  +GVRL   +DG     + 
Sbjct: 780 TIRMAVSDLRVMGRATQGVRLIKIQDGDSIASVA 813


>gi|169335584|ref|ZP_02862777.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258322|gb|EDS72288.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM
           17244]
          Length = 822

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/754 (32%), Positives = 401/754 (53%), Gaps = 13/754 (1%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                +   ++   +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++MSE+ L 
Sbjct: 5   EEIQDIHGRIEDRDIVEEMQTSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMSELNLS 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +   ++KSARIVG+ +GK HPHGD S+YD++VRLAQ F  RYPL+ G GNFG+IDGDS A
Sbjct: 65  YDKPYRKSARIVGDTMGKYHPHGDSSIYDAMVRLAQDFSTRYPLVDGHGNFGSIDGDSQA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA+MT++   +L+ + ++ VD+   ++E   EPVV PS+FPNLL NG++GIAVGM
Sbjct: 125 AMRYTEAKMTKMTGEMLRDISKETVDYAPNFDETLKEPVVLPSRFPNLLVNGSNGIAVGM 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN++E+ +A +ALI+NP I I  L++Y+ GPDFPTGG I+  +  I  +Y  GR
Sbjct: 185 ATNIPPHNLREVVDAIIALIENPNIEINDLIKYVKGPDFPTGG-IIMGKTGIYNAYTTGR 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++R++  +EE+ +    IVVTEIPY V K++++EKIA+L+  K++  + DIRDES  
Sbjct: 244 GRIKLRSKTHIEEISKKRQRIVVTEIPYMVNKAKMVEKIADLVRDKKVVGISDIRDESDR 303

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V     + ++  +++  ++  + ++  F +    L     P+V+ L  IL  +L H
Sbjct: 304 NGIRVAIDLRKDVNASIILNQLYKYTQLQDTFSVINLALVD-NQPKVLNLKEILVHYLNH 362

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-KPKPVMVSRFSLTEN 426
           +++++ RR+ + ++    R  I++GLLIA  NIDEII IIR      +  ++ RF L+E 
Sbjct: 363 QKDIIVRRTEYDLKKAKARAHIVEGLLIALDNIDEIIKIIRASYNDAEEKLMERFDLSEV 422

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR L+ LE  ++++E   LL   E ++S+L S +   + I  E+ E+K+ +
Sbjct: 423 QAKAIVDMRLRRLQGLEREKLENEYAELLKTIEYLESVLASDELVMSIIKEELSEIKDKY 482

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                                      +       V        ++ K     ++AL  +
Sbjct: 483 GDERRTAFEVDDEDFDMEDLIEEEDIVVTITHVGYVKRLPASTYKTQKRGGKGVTALSTR 542

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D +K      T   I+  +  GK Y L    +       +  AI  L+ L+  + I  
Sbjct: 543 ENDFVKHLFFTTTHHYIMFFTNKGKVYRLKGYEIPDASRIAKGTAIVNLLALDPGEKITA 602

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                 +     L++ +  G       +E  ++ + G   + ++ ++++  V    G+  
Sbjct: 603 VIPIKEFKDDEYLVMATRNGVFKKTSLTEYDSSRKNGIVAINLAEDDELIGVSLTDGNQN 662

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRS 718
           + +       + F+   +  + R  KGV+  S KD     +I   I  +    +    + 
Sbjct: 663 IILGTHKGLAIKFNEADVRAIGRVSKGVKGISLKDDDY--LIGMDIATDNAYVLSVTEKG 720

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +     L     R G G L  K   ++G    
Sbjct: 721 YGKITKTNLYPTQGRAGKGVLNYKLTKKTGALSG 754



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/516 (10%), Positives = 142/516 (27%), Gaps = 24/516 (4%)

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           ++  + +         ++     I          ++  +E +V      +     R  + 
Sbjct: 315 DVNASIILNQLYKYTQLQDTFSVINLALVDNQPKVLNLKEILVHYLNHQKDIIVRRTEYD 374

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +++    +   +V  +   +     I KI           L +  D S    + ++  + 
Sbjct: 375 LKKAKARAH--IVEGLLIALDNIDEIIKIIRASYNDAEEKLMERFDLSEVQAKAIVDMRL 432

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R L      +     +++        +VL+   +   +  + + +    +  E       
Sbjct: 433 RRLQGLEREKLENEYAELLKTIEYLESVLASDELVMSIIKEELSEIKDKYGDERRTAFEV 492

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
                    +   + +++   ++  +  +       K        +T         ++  
Sbjct: 493 DDEDFDMEDLIEEEDIVVTITHVGYVKRL--PASTYKTQKRGGKGVTALSTRENDFVKHL 550

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
                  Y +       +   +  +    S   +   I   +           +      
Sbjct: 551 FFTTTHHYIMFFTNKGKVYRLKGYEIPDASRIAKGTAIVNLLAL------DPGEKITAVI 604

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
              E    +   +            V           S    + A++  E D L      
Sbjct: 605 PIKEFKDDEYLVMATRNG-------VFKKTSLTEYDSSRKNGIVAINLAEDDELIGVSLT 657

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                I+L +  G A      ++ +     + +   I L  +  ++   +      +L V
Sbjct: 658 DGNQNIILGTHKGLAIKFNEADVRAIGRVSKGV-KGISLKDDDYLIGMDIATDNAYVLSV 716

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL-----VVKVTGDHVAVVGENRKLLI 672
           + KG   I + +      R GK  L     +K        V++   D + V+  +  ++ 
Sbjct: 717 TEKGYGKITKTNLYPTQGRAGKGVLNYKLTKKTGALSGMCVIEKEKDDIMVISIDGTVIR 776

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
                I +M R   GV++ +  +      I     +
Sbjct: 777 IDTSGISQMGRSTSGVKVMTLDEDVNISTIAKVPSQ 812


>gi|238895767|ref|YP_002920503.1| DNA gyrase subunit A [Klebsiella pneumoniae NTUH-K2044]
 gi|262043282|ref|ZP_06016413.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330000608|ref|ZP_08303751.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3]
 gi|238548085|dbj|BAH64436.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259039381|gb|EEW40521.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328537950|gb|EGF64129.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3]
          Length = 877

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/793 (32%), Positives = 389/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA +D+ +ISIE L+ +I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +      +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAENDSVVSLIIPRGEGA-ILTVTQNGYGKRTAAAEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
             + M+      VV      +R++   +  +  +   E DS+   +       IL ++ +
Sbjct: 691 QDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAENDSVVSLIIPRGEGAILTVTQN 750

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G      A    +     + +  +     N  +V A   D   ++++++  G       S
Sbjct: 751 GYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVS 810

Query: 630 EIIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           E+    R   G   ++ + +E +         V  + +
Sbjct: 811 EVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|288934292|ref|YP_003438351.1| DNA gyrase subunit alpha [Klebsiella variicola At-22]
 gi|288889021|gb|ADC57339.1| DNA gyrase, A subunit [Klebsiella variicola At-22]
          Length = 877

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/793 (32%), Positives = 389/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA +D+ +ISIE L+ +I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKVALVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +      +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAENDSVVSLIIPRGEGA-ILTVTQNGYGKRTAAAEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
             + M+      VV      +R++   +  +  +   E DS+   +       IL ++ +
Sbjct: 691 QDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAENDSVVSLIIPRGEGAILTVTQN 750

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G      A    +     + +  +     N  +V A   D   ++++++  G       S
Sbjct: 751 GYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVS 810

Query: 630 EIIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           E+    R   G   ++ + +E +         V  + +
Sbjct: 811 EVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|206578949|ref|YP_002237364.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342]
 gi|290508495|ref|ZP_06547866.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55]
 gi|206568007|gb|ACI09783.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342]
 gi|289777889|gb|EFD85886.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55]
          Length = 877

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/793 (32%), Positives = 389/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA +D+ +ISIE L+ +I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +      +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAENDSVVSLIIPRGEGA-ILTVTQNGYGKRTAAAEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
             + M+      VV      +R++   +  +  +   E DS+   +       IL ++ +
Sbjct: 691 QDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAENDSVVSLIIPRGEGAILTVTQN 750

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G      A    +     + +  +     N  +V A   D   ++++++  G       S
Sbjct: 751 GYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVS 810

Query: 630 EIIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           E+    R   G   ++ + +E +         V  + +
Sbjct: 811 EVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|251792152|ref|YP_003006872.1| DNA gyrase subunit A [Aggregatibacter aphrophilus NJ8700]
 gi|247533539|gb|ACS96785.1| DNA gyrase, A subunit [Aggregatibacter aphrophilus NJ8700]
          Length = 885

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/814 (30%), Positives = 395/814 (48%), Gaps = 73/814 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +  
Sbjct: 2   TDLVQDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++KSARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG++DGD+ AA R
Sbjct: 62  PYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I+N +I+I++L+ +I GPDFPT   ++  R+ I E+Y+ GRG  
Sbjct: 182 IPPHNLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAA-LINGRKGIEEAYKTGRGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +E   +G   I+V EIPYQV K++LIEKIAE +  K+I  +  +RDES +D  
Sbjct: 241 YVRAKAEIETDEKGRETIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++ L+ M+  F +N+  L     P+++ L  +++ ++ HRRE
Sbjct: 301 RIVIEIKRDAVGEVVLNNLYALTQMQVTFGINIVALDH-GQPKLLNLKQLIEAFVLHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  N+D II +IR    P+                
Sbjct: 360 VVTRRTIFELRKARERTHILEGLAIALANVDPIIELIRQAPNPETAKRELIARPWQLGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +    + LTE Q  AIL+LRL+ L  L   +I  E   
Sbjct: 420 ADMLAAAGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKK 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL    ++  +L S ++    I  E+ +++E F+          +         A     
Sbjct: 480 LLEAIGELLHILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +  
Sbjct: 600 WLKVYQLPQASRGSRGRPIVNILPLGENERITAILPVTAYEEDKFVIMATAGGVVKKIAL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E       G   L +  E+++  V    G + + +     +++ FS   +  M R   G
Sbjct: 660 TEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSETAVRAMGRLATG 719

Query: 687 VRLQSYK------DGG---------------------ISDVICFKICEGLTWIDSAGRSY 719
           VR           D                          V           + +    Y
Sbjct: 720 VRGIKLALTNDLSDDESAVEIEDVSDDNAEETLDLNIDKVVSLVVPKNNGEILTATQNGY 779

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           R   G +  K   R+GK +++
Sbjct: 780 GKRTKLEEYPTKSRNTKGVISIKVSERNGKVVAA 813



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLV 653
           +   +V+  V  +  ++L  +  G     +  E    +R  K  + +     + + +   
Sbjct: 755 NIDKVVSLVVPKNNGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERNGKVVAAT 814

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD----VICFKICEG 708
             +  D + ++ +   L+   + ++  + R  +GVRL    +         +      EG
Sbjct: 815 QVIDTDQIMLITDAGTLVRTRVSEVSIIGRNTQGVRLIRTSEDEHVVSLERICDVDDEEG 874

Query: 709 LT 710
             
Sbjct: 875 EQ 876


>gi|312886823|ref|ZP_07746429.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603]
 gi|311300650|gb|EFQ77713.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603]
          Length = 883

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/769 (29%), Positives = 402/769 (52%), Gaps = 21/769 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D   N +   ++ +  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRR+++ 
Sbjct: 1   MAEDT-ENGDNGSQDRIIPINIEEEMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYG 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  +GL+    +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGN+G+
Sbjct: 60  MLNLGLNSNKPYKKSARIVGEVLGKYHPHGDSSVYGTMVRMAQEWSLRYPLVDGQGNYGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+ AA RYTEAR+ ++AE +L  +++D +D++  +++ + EP V P+KFPNLL NG 
Sbjct: 120 IDGDNPAAMRYTEARLLKIAEEMLADINKDTIDYQLNFDDTEQEPTVLPAKFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E+  A +A ID+  I I +L++++ GPDFPTGG I+   E   
Sbjct: 180 SGIAVGMATNMAPHNLTEVINATMAYIDDRNIEITELMKFVKGPDFPTGG-IIYGFEGAR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+   GRG   +RAR  +E        I+VTEIPYQ+ KS +IE+ AEL+  K++  +  
Sbjct: 239 EASETGRGRIILRARAEIEVYNNDRERIIVTEIPYQINKSIMIERTAELVNEKKLEGISA 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   V++   R  +  +++ ++F  + ++T F +N   L     P ++ L  +
Sbjct: 299 MRDESNREGIRVVYEIKRDANAAIVLNNLFKYTSLQTSFSVNNIALVH-GRPMLLNLKDL 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           +  ++ HR EV+ RR+ F +   ++R  IL+GLLIA  ++DE+I +IR+ + P       
Sbjct: 358 IHHFVEHRHEVIVRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSNTPDEARDGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++RF+L++ Q  AIL++ LR L  LE  +IK+E + L+   + + S+L     +   I  
Sbjct: 418 MTRFNLSDIQARAILDMTLRRLTGLERDKIKAEYNELMKLIDYLKSILADEGLRMEIIKN 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+KE +          ++    +          +       +  +     R+     
Sbjct: 478 ELIEIKEKYGDERRTQIVHSSAEMQTEDFIEDENVVITISHEGYIKRTPLTEYRTQARGG 537

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID 595
                 + ++ D ++  L A   + +L  +  G+ + L    +  G    +  AIQ +I+
Sbjct: 538 KGSIGSNSRDADFIEHLLIASNHNYMLFFTESGQCFWLRVFEIPEGTRTSKGRAIQNIIN 597

Query: 596 LNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           +   ++I             Y     +++ + KG                G   + ++  
Sbjct: 598 IPKEENIKAYIKLTSLKDRDYLENNFIIMCTRKGVIKKTSLEAYSRPRANGINAININEG 657

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICF 703
           + +      TG   + +  ++ + + F+   +  M R   GVR  +   ++  +  +I  
Sbjct: 658 DTLLQATLTTGSSEIVMALKSGRAIRFNESTVRPMGRTATGVRGITLAGENDEVVGMIAI 717

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              E  T +  + + Y +  +     +  RGG G        ++G+ ++
Sbjct: 718 DDAE-TTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTEKTGQLVA 765



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/479 (12%), Positives = 151/479 (31%), Gaps = 28/479 (5%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--AK 293
           ++ I             R ++ + E  + +   ++  +   +     + ++        +
Sbjct: 355 KDLIHHFVEHRHEVIVRRTKFELAEAEKRAH--ILEGLLIALDHLDEVIQLIRSSNTPDE 412

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
               L    + S    R +L    R L      +     +++        ++L+   +  
Sbjct: 413 ARDGLMTRFNLSDIQARAILDMTLRRLTGLERDKIKAEYNELMKLIDYLKSILADEGLRM 472

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            +  + +++    +  E   +      +         + ++I   +   I      E + 
Sbjct: 473 EIIKNELIEIKEKYGDERRTQIVHSSAEMQTEDFIEDENVVITISHEGYIKRTPLTEYRT 532

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +         + ++    +   L  +     Y +              +    +   +  
Sbjct: 533 QARGGKGSIGSNSRDADFIEHLL--IASNHNYMLFFTESGQCFWLRVFEIPEGTRTSKGR 590

Query: 474 QIACEI----REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
            I   I     E  + + K T L  R                          +  ++   
Sbjct: 591 AIQNIINIPKEENIKAYIKLTSLKDRDYLENNFIIMC----------TRKGVIKKTSLEA 640

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
               +++   ++A++  EGD+L  A     +  I++    G+A       +         
Sbjct: 641 YSRPRAN--GINAININEGDTLLQATLTTGSSEIVMALKSGRAIRFNESTVRPMGRTATG 698

Query: 590 IQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSS 646
           ++ +     N ++V     D     +LVVS KG     +  +     R GK    + V+ 
Sbjct: 699 VRGITLAGENDEVVGMIAIDDAETTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTE 758

Query: 647 E-EKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
           +  ++  +  VT +H + ++  +  ++  S++Q+  M R  +GVRL S K+      + 
Sbjct: 759 KTGQLVAIKGVTDEHDLMIINRSGIIIRISMNQLRTMGRATQGVRLISLKENDSIASVA 817


>gi|239814627|ref|YP_002943537.1| DNA gyrase subunit A [Variovorax paradoxus S110]
 gi|239801204|gb|ACS18271.1| DNA gyrase, A subunit [Variovorax paradoxus S110]
          Length = 881

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/800 (31%), Positives = 394/800 (49%), Gaps = 71/800 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VRLAQ F  R+ L+ GQGNFG++DGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF+D Y+  + EP V PSK PNLL NG+ GIAVGMAT+IP HN+ E
Sbjct: 130 IAHEMLADIDKETVDFQDNYDGSEKEPKVLPSKLPNLLVNGSGGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+ NP+ +I++L+E +  PDFPT G I+     + + YR GRG   +RA+   
Sbjct: 190 VVDACLHLLRNPQATIDELMEIVPAPDFPTAG-IIYGINGVRDGYRTGRGKVVMRAKCHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P++  L  +++ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKQTQLQDTFGINMVALVD-GQPKLCNLKDLIEVFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-------------------------- 411
           F ++    R  +L+GL +A  NIDE I IIR                             
Sbjct: 368 FTLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLTRS 427

Query: 412 -------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                              +        + L+E Q   IL +RL+ L  LE+ +I +E  
Sbjct: 428 RADGGVVNADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++AE + +  +L   ++    I  E+  +K+ F +S    RR         +      +
Sbjct: 488 EVMAEIDDLLDILAKPERVSVIIGEELGTIKQEFGQSKLGARRSLVE----HSAYDLSTE 543

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I    + V +S+ G+         R+ K       A   KE D +     A+T D IL
Sbjct: 544 DLITPTDMVVTLSHSGYIKSQPLNEYRAQKRGGRGKQATVTKEDDWIDQLFIANTHDYIL 603

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTCKLL 615
             S  G+ Y L    +   S    G  I  +  L   + I  A         + +   + 
Sbjct: 604 CFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQYVF 663

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFS 674
           + +S G        E     + G   + +   + +       G H V +  +  K + F 
Sbjct: 664 MATSMGTVKKTTLDEFSNPRKGGIIAVNLDEGDYLIGAALTDGKHDVMLFSDGGKAVRFD 723

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + +  + R  +GVR  S   G     +     E  + + +    Y +  +        R
Sbjct: 724 EEDVRPLGRNARGVRGMSLDPGQGVIAMLVAEDEQQSVLTATENGYGKRTSITEYTRHGR 783

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
           G  G +  +   R+GK +++
Sbjct: 784 GTKGMIAIQQSERNGKVVAA 803



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 7/145 (4%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LL 615
                 ++L S  GKA      ++     +   ++ +  L+  Q ++   V +   + +L
Sbjct: 704 TDGKHDVMLFSDGGKAVRFDEEDVRPLGRNARGVRGM-SLDPGQGVIAMLVAEDEQQSVL 762

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLL 671
             +  G       +E   + R  K  + +   E+   VV  T     D + ++ +   L+
Sbjct: 763 TATENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDKGVLV 822

Query: 672 IFSIDQIPEMSRG-KGVRLQSYKDG 695
              + +I E+ R  +GV L    +G
Sbjct: 823 RTRVAEIRELGRATQGVTLIGLDEG 847


>gi|161502573|ref|YP_001569685.1| DNA gyrase subunit A [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863920|gb|ABX20543.1| hypothetical protein SARI_00617 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 878

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|226947229|ref|YP_002802320.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto]
 gi|226840756|gb|ACO83422.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto]
          Length = 846

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 409/760 (53%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G ++     I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSG-LIVGTRGIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE   G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L     PQ++ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALV-NNQPQILNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR      + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + V +++ G+I+          K     +
Sbjct: 479 ERKT--------EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +       +      LI + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E S+  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G D + VV +N   + F+ + +  M R   GV+  + +    +  +   I E  T + 
Sbjct: 651 TKGNDEIIVVTQNGYCIRFNEEDVRPMGRVATGVKAITLRKTDKAVSMDVVI-EDETLLS 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 710 ISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 55/509 (10%), Positives = 138/509 (27%), Gaps = 25/509 (4%)

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
                  ++     I+         I+  +E +V      +   R R R+ +      + 
Sbjct: 316 QLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRRTRFDL--DKALAR 373

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
             ++  +   +     + K+        +    L +  + S +  + +L  K + L    
Sbjct: 374 AHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLTGLE 433

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
             +      ++  +      +L    +   +  + +++    +  E              
Sbjct: 434 REKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDI 493

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +   K +++   +   I  +  +    +         T  + D  +      +     
Sbjct: 494 EDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMF--VTSTHS 551

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +       + + +  +        +   I   I                     +   
Sbjct: 552 TILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLI-------------PIENNEKIQTVI 598

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
             K               +I      +        L+A++ +E D L         D I+
Sbjct: 599 GLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEII 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +++ +G        ++         +   I L      V+  V      LL +S  G   
Sbjct: 659 VVTQNGYCIRFNEEDVRPMGRVATGV-KAITLRKTDKAVSMDVVIEDETLLSISENGFGK 717

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE 680
             +  E   + R GK  +     +K   +     V   D + +V      +  ++ +I +
Sbjct: 718 RTDIEEYPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISK 777

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEG 708
            SR   GV+L    +      I     E 
Sbjct: 778 TSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|256963988|ref|ZP_05568159.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256954484|gb|EEU71116.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
          Length = 833

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 400/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD+++Y+S+VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R +   +++ +++ ++ ++T F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEK-GVPKILSLKRILENYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ F     + R  IL+GL IA  +IDEIIAIIR            + RF 
Sbjct: 356 EHQKEVITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V
Sbjct: 416 FSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 RTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++       + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   +  +   ++++ +  G + T    N + 
Sbjct: 622 TVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFD-ENTVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L  N  +V A + D   ++LV++  G     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  +  V GD  + ++     ++ F++D + +  R   GVRL   +DG 
Sbjct: 741 TANITEKNGP-LAGLTTVNGDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGA 799

Query: 697 ISDVIC 702
               + 
Sbjct: 800 KVVTMA 805


>gi|149201652|ref|ZP_01878626.1| DNA topoisomerase IV subunit A [Roseovarius sp. TM1035]
 gi|149144700|gb|EDM32729.1| DNA topoisomerase IV subunit A [Roseovarius sp. TM1035]
          Length = 768

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/766 (51%), Positives = 529/766 (69%), Gaps = 27/766 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +   +  E V    LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L 
Sbjct: 6   DDPNMQPEAVSE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLS 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ A
Sbjct: 65  SSGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARMT  AE +L G+ EDAVDFRD Y+    EPVV P+ FPNLLANG+SGIAVGM
Sbjct: 125 ASRYTEARMTAFAEALLDGLAEDAVDFRDNYDGTLREPVVLPASFPNLLANGSSGIAVGM 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ +A L LI +P+   + LL+YI GPDFPTGG+IVE  ESI ++Y  GR
Sbjct: 185 ATNIPPHNIAELIDACLHLIKSPDARDDTLLQYIPGPDFPTGGVIVEPPESIAQAYLTGR 244

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G FR+R +W +E++GRG W IVVTEIPYQVQKS+LIE+IAELI  +++P+L D+RDESA+
Sbjct: 245 GAFRLRCKWELEDLGRGQWQIVVTEIPYQVQKSKLIERIAELIQTRKVPILADVRDESAD 304

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           DVR+VL P+++++DP++LM  ++  S++E RF LNMNVL  G  P+V  L  +L+ +L  
Sbjct: 305 DVRLVLEPRSKNVDPEVLMGMMYRNSELEVRFSLNMNVLIDGVTPKVCSLKEVLRAFLDF 364

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------- 413
           R++VL RRS  RM+ ID R+E+L+GL+IA+LN+D +I IIR ++ P              
Sbjct: 365 RQQVLLRRSVHRMEKIDHRLEVLEGLIIAFLNLDRVIDIIRYDEDPKAALMREDWGRTVP 424

Query: 414 ---------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                     P   +   LTE Q +AILN+RLRSLR+LEE ++++E D L+AE+  ++ L
Sbjct: 425 RAMSEADYVPPPPTAEAGLTEVQAEAILNMRLRSLRRLEEMELRAERDTLMAERAGLEDL 484

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L+    QW  +A +++EVK+ F K+  +G RRT F E + + +    +AMI++EPITVV 
Sbjct: 485 LDDVSLQWAAVADQLKEVKKTFGKTHPIGARRTQFAE-AGSVEDVPLEAMIDREPITVVC 543

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           S  GWIR++  H      L FK+GD  +   HA TTDRIL+  ++G+ YTL A NL  GR
Sbjct: 544 SQMGWIRAMTGHLDLSRELKFKDGDGPRFMFHAETTDRILVFGSNGRFYTLSASNLPGGR 603

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G GE ++L++DL +   IV   ++    KLLV S  G+ FIV E E+IA TR GK  L +
Sbjct: 604 GMGEPLRLMVDLPNEAGIVDLLIHKPGRKLLVASDAGDGFIVPEEEVIAQTRSGKQVLNL 663

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFK 704
               +  +   VTGDHVA VG+NRK+L+F++D++PE+ RGKGVRLQ YKDGG+SD   F 
Sbjct: 664 KEPARALVCRPVTGDHVACVGDNRKVLVFALDELPELGRGKGVRLQKYKDGGLSDATTFD 723

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  GLTW D AGR   R+E++L  WLGKR G G + P+GFPR  +F
Sbjct: 724 LAAGLTWRDPAGR--TRTESNLEEWLGKRAGSGRMAPRGFPRDNRF 767


>gi|170756835|ref|YP_001779633.1| DNA gyrase subunit A [Clostridium botulinum B1 str. Okra]
 gi|169122047|gb|ACA45883.1| DNA gyrase, A subunit [Clostridium botulinum B1 str. Okra]
          Length = 861

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 409/760 (53%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G ++     I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSG-LIVGTRGIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE   G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L     PQ++ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALV-NNQPQILNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR      + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + V +++ G+I+          K     +
Sbjct: 479 ERKT--------EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +       +      LI + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E S+  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G D + VV +N   + F+ + +  M R   GV+  + +    +  +   I E  T + 
Sbjct: 651 TKGNDEIIVVTQNGYCIRFNEEDVRPMGRVATGVKAITLRKTDKAVSMDVVI-EDETLLS 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 710 ISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/510 (10%), Positives = 139/510 (27%), Gaps = 25/510 (4%)

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
                  ++     I+         I+  +E +V      +   R R R+ +      + 
Sbjct: 316 QLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRRTRFDL--DKALAR 373

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
             ++  +   +     + K+        +    L +  + S +  + +L  K + L    
Sbjct: 374 AHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLTGLE 433

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
             +      ++  +      +L    +   +  + +++    +  E              
Sbjct: 434 REKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDI 493

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +   K +++   +   I  +  +    +         T  + D  +      +     
Sbjct: 494 EDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMF--VTSTHS 551

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +       + + +  +        +   I   I                     +   
Sbjct: 552 TILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLI-------------PIENNEKIQTVI 598

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
             K               +I      +        L+A++ +E D L         D I+
Sbjct: 599 GLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEII 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +++ +G        ++         +   I L      V+  V      LL +S  G   
Sbjct: 659 VVTQNGYCIRFNEEDVRPMGRVATGV-KAITLRKTDKAVSMDVVIEDETLLSISENGFGK 717

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE 680
             +  E   + R GK  +     +K   +     V   D + +V      +  ++ +I +
Sbjct: 718 RTDIEEYPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISK 777

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            SR   GV+L    +      I     E +
Sbjct: 778 TSRNAMGVKLMRTSEEEKIVAIAKIKSEDI 807


>gi|168181122|ref|ZP_02615786.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
 gi|182668086|gb|EDT80065.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
          Length = 856

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 409/760 (53%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G ++     I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSG-LIVGTRGIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE   G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L     PQ++ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALV-NNQPQILNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR      + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + V +++ G+I+          K     +
Sbjct: 479 ERKT--------EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +       +      LI + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E S+  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G D + VV +N   + F+ + +  M R   GV+  + +    +  +   I E  T + 
Sbjct: 651 TKGNDEIIVVTQNGYCIRFNEEDVRPMGRVATGVKAITLRKTDKAVSMDVVI-EDETLLS 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 710 ISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/510 (10%), Positives = 139/510 (27%), Gaps = 25/510 (4%)

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
                  ++     I+         I+  +E +V      +   R R R+ +      + 
Sbjct: 316 QLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRRTRFDL--DKALAR 373

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
             ++  +   +     + K+        +    L +  + S +  + +L  K + L    
Sbjct: 374 AHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLTGLE 433

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
             +      ++  +      +L    +   +  + +++    +  E              
Sbjct: 434 REKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDI 493

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +   K +++   +   I  +  +    +         T  + D  +      +     
Sbjct: 494 EDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMF--VTSTHS 551

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +       + + +  +        +   I   I                     +   
Sbjct: 552 TILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLI-------------PIENNEKIQTVI 598

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
             K               +I      +        L+A++ +E D L         D I+
Sbjct: 599 GLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEII 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +++ +G        ++         +   I L      V+  V      LL +S  G   
Sbjct: 659 VVTQNGYCIRFNEEDVRPMGRVATGV-KAITLRKTDKAVSMDVVIEDETLLSISENGFGK 717

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE 680
             +  E   + R GK  +     +K   +     V   D + +V      +  ++ +I +
Sbjct: 718 RTDIEEYPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISK 777

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            SR   GV+L    +      I     E +
Sbjct: 778 TSRNAMGVKLMRTSEEEKIVAIAKIKSEDI 807


>gi|308187583|ref|YP_003931714.1| DNA gyrase subunit A [Pantoea vagans C9-1]
 gi|308058093|gb|ADO10265.1| DNA gyrase subunit A [Pantoea vagans C9-1]
          Length = 890

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+    LA I++  ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLREVINGCLAYIEDENISIEALMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I++ E+PYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARGEVEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++T F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKIMALKEILDAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVSAMLERAGDDAARPEWLDPQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L+S ++    I  E+  +++ F           T         
Sbjct: 475 LDEYKALLEQIAELLHILSSAERLMEVIREELELMRDQFGDDRRTEITANTADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y     + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFNIFMATALGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                  E       G   + +  ++++  V    G D   +     K++ F+   +  M
Sbjct: 655 VKKTALKEFSRPRSAGIIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +G     +     EG   +      Y +   +       R   G + 
Sbjct: 715 GRTASGVRGIRLAEGDRVVSLIVPREEGA-IMTVTQNGYGKRTANSEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGPVIGA 786


>gi|222150259|ref|YP_002559412.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402]
 gi|222119381|dbj|BAH16716.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402]
          Length = 879

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/759 (31%), Positives = 412/759 (54%), Gaps = 30/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  +K  ++   +++ +L YA+S I  RA+PD+RDG KPVHRRI++ M+  G+     +K
Sbjct: 6   DSKLKEQNIVKEMKDSFLDYAMSVIVSRALPDVRDGMKPVHRRILYGMNNQGMTPDKPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RY L+ GQGNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYMLVDGQGNFGSMDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +++ +++D +DF D Y+  + EPVV PS+FPNLL NG SGIAVGMAT+IP 
Sbjct: 126 ARMSKIAMELMRDINKDTIDFTDNYDGNEREPVVLPSRFPNLLVNGASGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+    L L  NP+ISI +L+E I GPDFPT G ++  R  I  +Y  GRG   +R
Sbjct: 186 HNLTEVINGVLELSKNPDISIPELMELIQGPDFPTAG-LILGRSGIRRAYETGRGSVIMR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A+  +E    G   I+++EIPYQV K+RL+EKIAEL   K++  + D+RDE++ ++   +
Sbjct: 245 AKTLIETRPNGKETIIISEIPYQVNKARLVEKIAELARDKKVDGITDLRDETSLKEGVRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++ +++  + ++T F +NM  L     PQV+ +   +  +L H++ V+
Sbjct: 305 VIDVRRDANANVILNNLYKQTPLQTSFGVNMLALVD-GKPQVLNIKQAIYHYLEHQKTVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVD 429
            RR+++ ++  + R  IL+GL IA  +IDEIIA+IR  +        +  +F L+E Q  
Sbjct: 364 RRRTAYNLKKAEDRAHILEGLRIALDHIDEIIALIRASNNDAEALQGLQEQFKLSERQAQ 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE   LL   +++ ++L   ++    I  E+ E+++ +   
Sbjct: 424 AILDMRLRRLTGLERDKIESEYQELLKYIDELRAILADEEKLLQIIREELIEIRDKYGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT     +   +    + +I++E I + +S+  +I+                + 
Sbjct: 484 -----RRTEIV--AGGLEDLEDEDLIDEENIVITLSSNNYIKRLPASTYRAQHRGGRGIQ 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            ++  + D +   +   T D +L  +  G+ Y +    +       +   I  +IDL+ +
Sbjct: 537 GMNTLDEDFVSQMVTTSTHDNVLFFTNKGRVYKVKGYEIPELSRQSKGIPIVNVIDLDKD 596

Query: 600 QDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I T             ++  +  G       S      + GK  +    E+++  V  
Sbjct: 597 ESISTMIAVKNLEREDAYIVFATKHGLIKRSNLSHFSRINKNGKIAINFREEDELIAVRL 656

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWI 712
             G+  + +  ++  L+ F  +++  + R   GV+  S ++G  +  +   +  +    +
Sbjct: 657 TDGNKQLIIGTKHASLIRFEENKLRPLGRTAAGVKGISLREGDEVIGLDVIESNDEHEVL 716

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 Y +   +    +  RGG G        ++G  +
Sbjct: 717 VVTENGYGKRTKESEYRISNRGGKGIKTATITEKNGNLV 755



 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 8/135 (5%)

Query: 589 AIQLLIDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L    +++       +   ++LVV+  G     +ESE   + R GK      +
Sbjct: 688 AGVKGISLREGDEVIGLDVIESNDEHEVLVVTENGYGKRTKESEYRISNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
              +   + +      + + +V ++  ++   + +  +  R  +GVRL    +G      
Sbjct: 748 TEKNGNLVCITTVNGNEDIMIVTDHGVIIRLDVAEFSQNGRSAQGVRLIRLDEGQFV-AT 806

Query: 702 CFKICEGLTWIDSAG 716
             K+ +    +D   
Sbjct: 807 VAKVEKEEEVMDEDK 821


>gi|170758200|ref|YP_001785342.1| DNA gyrase subunit A [Clostridium botulinum A3 str. Loch Maree]
 gi|169405189|gb|ACA53600.1| DNA gyrase, A subunit [Clostridium botulinum A3 str. Loch Maree]
          Length = 831

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/760 (31%), Positives = 409/760 (53%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLSPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVRLAQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G ++     I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVTIMDLMTKIKGPDFPTSG-LIVGTRGIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE   G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKADIEEEK-GRNRIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L     PQV+ L  IL  +L  ++EV
Sbjct: 300 IVIELKRDANPNVVLNQLYKHTKLQDTFGIIMLALV-NNQPQVLNLKEILVNYLEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR+     + K  +++ F+L+E Q 
Sbjct: 359 IRRRTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+        +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMERIGYFRQILDKEELVLSIIKEELTEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT      + +     + +IE + + V +++ G+I+          K     +
Sbjct: 479 E-----RRTEIV---KGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +       +      +I + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E  +  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEIVKYSSIRKGGLIAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G + + +V +N   + F+   +  M R   GV+  + ++   +  +   + +    + 
Sbjct: 651 TKGNNEIIIVTQNGYCIRFNEKDVRPMGRTASGVKAITLREDDKAVSMDVVLEDEA-LLS 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 710 ISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/473 (10%), Positives = 130/473 (27%), Gaps = 24/473 (5%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA--KR 294
           + I+ +Y   +     R R   +     +   ++  +   +     + K+        + 
Sbjct: 345 KEILVNYLEFQKEVIRR-RTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEA 403

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
              L +  + S +  + +L  K + L      +      ++  R      +L    +   
Sbjct: 404 KEGLMNNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMERIGYFRQILDKEELVLS 463

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           +  + + +    +  E                +   K +++   +   I  +  +    +
Sbjct: 464 IIKEELTEIKNKYGDERRTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQ 523

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                    T  + D  +      +       +       + + +  +        +   
Sbjct: 524 KRGGKGIQATSTKQDDFIENMF--VTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTN 581

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I   I                     +     K               +I     ++   
Sbjct: 582 IVNII-------------PIENNEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEIVKYSS 628

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
                L A++ +E D L         + I++++ +G        ++        +    I
Sbjct: 629 IRKGGLIAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEKDVRPMGRTA-SGVKAI 687

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MK 651
            L  +   V+  V      LL +S  G     +  E   + R GK  +     +K   + 
Sbjct: 688 TLREDDKAVSMDVVLEDEALLSISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIV 747

Query: 652 LVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               V   D + +V      +  ++ +I + SR   GV+L    +      I 
Sbjct: 748 GARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIA 800


>gi|73542263|ref|YP_296783.1| DNA gyrase subunit A [Ralstonia eutropha JMP134]
 gi|72119676|gb|AAZ61939.1| DNA gyrase subunit A [Ralstonia eutropha JMP134]
          Length = 883

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/804 (29%), Positives = 389/804 (48%), Gaps = 63/804 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               +    VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  
Sbjct: 2   DPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP + P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLHDIDKETVDFDPNYDGSEKEPAILPARIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  L L+ NP+ ++++L+E I  PDFPT G I+   + + E YR GRG  
Sbjct: 182 IPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAG-IIYGIQGVREGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   E++ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +  
Sbjct: 241 VMRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R+  P++++ +++  + ++  F +NM  L   R P+++ L  +L+ +L HRR
Sbjct: 301 MRVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVD-RQPRLLNLKQMLEYFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------- 414
           EV+ RR+ F ++    R  +L+GL +A  NIDE IAII+    P                
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSGL 419

Query: 415 -----------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L+++Q   IL +RL+ L  LE+ 
Sbjct: 420 VREMLARAEADTPGGRASYRPDGLPAMFGMQGDGLYRLSDSQAQEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I  E  +++A    +  +L   ++    I+ E+  ++  F                +  
Sbjct: 480 KIVQEYRDVMAIIADLLDILARPERITTIISDELTAIRAEFGDERRSQIELNATELDTED 539

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
                   +       +        R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +        G  I  +  L+  + I        +D+   + + +++
Sbjct: 600 FSNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSDGEKINVILPVRQFDAEHFIFMATAR 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       +E     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGW 729
            M R  +GVR  +  +      +     E           + + +    Y +        
Sbjct: 720 PMGRQARGVRGMNLDESQTVIAMLVAPAETAEQTEAGSPGSVLTATENGYGKRTPIAEYT 779

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              RG  G +  +   R+G+ +++
Sbjct: 780 RHGRGTKGMIAIQTSERNGRVVAA 803



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 63/188 (33%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 661 TVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRP 720

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L+ +Q ++   V  +             +L  +  G       +E  
Sbjct: 721 MGRQARGVRGM-NLDESQTVIAMLVAPAETAEQTEAGSPGSVLTATENGYGKRTPIAEYT 779

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     +   +   +    D + ++     L+   + +I EM R  +GV
Sbjct: 780 RHGRGTKGMIAIQTSERNGRVVAAALVSPDDEIMLITTGGVLIRTRVAEIREMGRATQGV 839

Query: 688 RLQSYKDG 695
            L +  +G
Sbjct: 840 TLINVDEG 847


>gi|167563636|ref|ZP_02356552.1| DNA gyrase subunit A [Burkholderia oklahomensis EO147]
          Length = 866

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/789 (29%), Positives = 372/789 (47%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACLYLLNNPQASVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRATTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-NQPKLLNLKEILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNI------------------------------------- 400
           + ++    R  +L+GL +A  NI                                     
Sbjct: 368 YELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRA 427

Query: 401 ---------DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                     E                  + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F                +        
Sbjct: 488 RDVMAQIADLLDILARPERITVMIGEELNAVKVEFGDVRRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + ++ G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSADKYVFMTTALGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  +  K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR     +G     +     E  + + +    + +           RG  G +  +  
Sbjct: 728 RGVRGMQLDEGQQVIAMLVAGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+G+ +++
Sbjct: 788 ERNGRVVAA 796



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +    
Sbjct: 678 KGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDE 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 738 GQQVIAMLVAGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|53720131|ref|YP_109117.1| DNA gyrase subunit A [Burkholderia pseudomallei K96243]
 gi|76811820|ref|YP_334380.1| DNA gyrase subunit A [Burkholderia pseudomallei 1710b]
 gi|126440756|ref|YP_001059907.1| DNA gyrase subunit A [Burkholderia pseudomallei 668]
 gi|126453773|ref|YP_001067196.1| DNA gyrase subunit A [Burkholderia pseudomallei 1106a]
 gi|134277587|ref|ZP_01764302.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305]
 gi|167720674|ref|ZP_02403910.1| DNA gyrase subunit A [Burkholderia pseudomallei DM98]
 gi|167739661|ref|ZP_02412435.1| DNA gyrase subunit A [Burkholderia pseudomallei 14]
 gi|167825268|ref|ZP_02456739.1| DNA gyrase subunit A [Burkholderia pseudomallei 9]
 gi|167846771|ref|ZP_02472279.1| DNA gyrase subunit A [Burkholderia pseudomallei B7210]
 gi|167895358|ref|ZP_02482760.1| DNA gyrase subunit A [Burkholderia pseudomallei 7894]
 gi|167903745|ref|ZP_02490950.1| DNA gyrase subunit A [Burkholderia pseudomallei NCTC 13177]
 gi|167911993|ref|ZP_02499084.1| DNA gyrase subunit A [Burkholderia pseudomallei 112]
 gi|167919984|ref|ZP_02507075.1| DNA gyrase subunit A [Burkholderia pseudomallei BCC215]
 gi|226197855|ref|ZP_03793429.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9]
 gi|242315131|ref|ZP_04814147.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b]
 gi|254191969|ref|ZP_04898469.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|254261157|ref|ZP_04952211.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a]
 gi|52210545|emb|CAH36528.1| DNA Gyrase, subunit A [Burkholderia pseudomallei K96243]
 gi|76581273|gb|ABA50748.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710b]
 gi|126220249|gb|ABN83755.1| DNA gyrase, A subunit [Burkholderia pseudomallei 668]
 gi|126227415|gb|ABN90955.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106a]
 gi|134251237|gb|EBA51316.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305]
 gi|157987791|gb|EDO95556.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|225930043|gb|EEH26056.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9]
 gi|242138370|gb|EES24772.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b]
 gi|254219846|gb|EET09230.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a]
          Length = 866

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/789 (30%), Positives = 379/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACLYLLNNPQASVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-NQPKLLNLREILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------------- 409
           + ++    R  +L+GL +A  NIDE IAII+                             
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRA 427

Query: 410 ------------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F  +             +        
Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + ++ G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTTALGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  +  K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR     D      +     E  + + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+G+ +++
Sbjct: 788 ERNGRVVAA 796



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDD 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 738 AQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|238926628|ref|ZP_04658388.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531]
 gi|238885574|gb|EEQ49212.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531]
          Length = 824

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              +  +  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM   G+    
Sbjct: 13  DFGQGRIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSK 72

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGDSAAA R
Sbjct: 73  PYKKSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMR 132

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++AEL+L+ +D++ VDF D Y+  + EP V P+KFP LL NGT+GIAVGMAT+
Sbjct: 133 YTEVRMSKIAELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATN 192

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L LIDNP+ +I++L+  I GPDFPT G ++   E I ++Y  GRG  
Sbjct: 193 IPPHNMVEVINGTLMLIDNPDATIDELMGVIKGPDFPTAG-LILGTEEIRKAYTTGRGVI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RAR  +E +  G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES     
Sbjct: 252 KMRARAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGM 311

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++  ++  + ++  F + M  L     P +M L  +L+ ++ H+  
Sbjct: 312 RIVIELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVD-GQPVIMNLKHVLEHYIDHQEM 370

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ + +   + R  IL+GL IA  ++D +I  IR        +  ++  F LTE Q
Sbjct: 371 VITRRTRYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQ 430

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+LRL+ L  LE  +I+ E   +L   E++  +L    +    I  E+ EV++ + 
Sbjct: 431 AQAILDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILADRMKVLAIIKNELIEVRDKYG 490

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                 +RRT   E++        + +I +E + V ++   +I+ +   +          
Sbjct: 491 D-----KRRT---EITFDASEMDIKDLIAEEDVVVTLTLNNYIKRIPLDTYRRQRRGGVG 542

Query: 548 GDSLKIAL--------HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
              +               T   IL  +  G+A+ L +  +       +  AI  L+ + 
Sbjct: 543 VRGMGTKETDIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQAKGTAIINLLAVE 602

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           +++ I        + +   L + +  G       SE  +  R G   + +  ++++  V 
Sbjct: 603 NDERITAVIQVKEFRADRYLFLGTKHGVVKKTPLSEFGSIRRNGLKAVNLDEDDELIGVK 662

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G++ + +     K + F  + +  M R  +GVR  +  DG     +     +    +
Sbjct: 663 FTDGENRIMLGTRGGKAITFPEEGVRSMGRVARGVRGITLADGDEVVAMDVLRSDSE-VL 721

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +           RGG G +  K   ++G  + 
Sbjct: 722 TVTEGGYGKRTTASEYRTQTRGGKGLINMKVTEKTGPVVG 761



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L    ++V   V  S  ++L V+  G       SE    TR GK  + +   EK   +
Sbjct: 700 ITLADGDEVVAMDVLRSDSEVLTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTEKTGPV 759

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  V     + ++     ++  S+D+I  +SR  +GV+L +  +      + 
Sbjct: 760 VGIRVVRENQELMLITTEGIVIRTSVDEISLISRNTQGVKLMTIAESDRVASMA 813


>gi|119944871|ref|YP_942551.1| DNA gyrase, A subunit [Psychromonas ingrahamii 37]
 gi|119863475|gb|ABM02952.1| DNA gyrase subunit A [Psychromonas ingrahamii 37]
          Length = 898

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/809 (31%), Positives = 393/809 (48%), Gaps = 73/809 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            +V  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +  D+   +KK
Sbjct: 6   SDVSPINIEDELKTSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKLAHELLADLEKETVDFVPNYDGTEFIPEVMPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALI++ +I+I++L+E+I GPDFPT G I+  R+ I+++Y  GRG  +VRA
Sbjct: 186 NLGEVIDGCLALIEDADITIDQLIEFIPGPDFPTSG-IINGRKGIIDAYHTGRGKIKVRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +  +E     G   IVV E+PYQV K+RLIEKIAE +  K+I  +  +RDES +D   ++
Sbjct: 245 KADIEVNDKTGRETIVVHELPYQVNKARLIEKIAEFVKDKKIEGISALRDESDKDGMRMV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ +++  + M+  F +N   L     P++  L  +L+ ++ HRREV+ 
Sbjct: 305 VEVKRGEVGEVVLNNLYAQTQMQVTFGINAVALDH-GQPKLFNLKEMLEAFILHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------ 415
           RR+ F ++    R  IL+GL I+  NI+ IIA+IR+   P                    
Sbjct: 364 RRTVFELKKARERAHILEGLAISLANIEPIIALIRHSATPGEAKIALQAQGWNLGHVSAM 423

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                              V  +++ +TE Q  AIL+LRL+ L  LE  +I +E   LL 
Sbjct: 424 LEASGVDAARPDGLAIEFGVRDNQYFMTEVQAQAILDLRLQKLTGLEHEKILTEYKELLE 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
               +  +L + ++    I  E+ E+K  F+         +                +  
Sbjct: 484 IIAALLFILENPERLMEVIREELEEIKANFADPRRTEITASETDLSIEDLITEEDVVVTL 543

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                V         S +      +A   K+ D ++  L A T D IL  ST G+ Y L 
Sbjct: 544 SHEGYVKYQVLSDYESQRRGGKGKAATKMKDEDFIEKLLVASTHDTILCFSTRGRLYWLK 603

Query: 577 AGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI 631
              L   S +  G  I  ++ L   + I        Y     + + ++ G       S  
Sbjct: 604 VFQLPLASRQARGRPIVNILPLEEGERITAILPVRDYADDKFVFMATANGTVKKTALSAY 663

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ------------- 677
                 G   + ++ + ++  V    G + + +  +  K++ F   +             
Sbjct: 664 SRPRNSGLIAINLNEDNELIGVGITDGSNEIMIFSDAGKVVRFKEAEESAVLDENGAPVL 723

Query: 678 ------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
                       +  M R   GVR    K+G    V      E    + +    Y +   
Sbjct: 724 DEEGNPEIKVKGVRAMGRTATGVRGIKLKEGEKV-VSLIIPNETGHILTTTENGYGKRTP 782

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   R   G +  K   R+GK + +
Sbjct: 783 LEDYSSKSRATQGVISIKVSERNGKVVGA 811


>gi|262393882|ref|YP_003285736.1| DNA gyrase subunit A [Vibrio sp. Ex25]
 gi|262337476|gb|ACY51271.1| DNA gyrase subunit A [Vibrio sp. Ex25]
          Length = 906

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/825 (32%), Positives = 412/825 (49%), Gaps = 92/825 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVSAMLERAGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ F  +     RRT   E++ A   
Sbjct: 475 GEYKTLLEEIAELMHILASTERLMEVIREELEAVRDGFGDA-----RRT---EITAASHD 526

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              + +I +E + V +S+ G+          S +      SA   K+ D ++  L A+T 
Sbjct: 527 IDMEELIAREDVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTH 586

Query: 561 DRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLL 615
           D IL  ST GK Y L    L   S    G+ I  ++ L   + I        +     + 
Sbjct: 587 DNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDEFSEDKFIF 646

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + +  G       ++       G   + +  ++ +  V    G+  + +  +  K++ F 
Sbjct: 647 MATGDGTVKKTPLNQFANVRSNGLIAVNLREDDSLIGVDITNGENEIMLFSKAGKVVRFK 706

Query: 675 IDQ-------------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +                         +  M R   GVR     +      +     EG
Sbjct: 707 EAEEIPVLDENGKPVLDENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLIVPSHEG 766

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +      Y +           RG  G +  K   R+G  + +
Sbjct: 767 D-ILTVTENGYGKRTALSEYPTKGRGTQGVVSIKVSERNGPVVGA 810


>gi|255745655|ref|ZP_05419603.1| DNA gyrase subunit A [Vibrio cholera CIRS 101]
 gi|255736730|gb|EET92127.1| DNA gyrase subunit A [Vibrio cholera CIRS 101]
          Length = 894

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/817 (32%), Positives = 399/817 (48%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E   +  +L S ++    I  E+  ++  FS +        T         A
Sbjct: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   L +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVV 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     EG   +    
Sbjct: 715 DENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +  +        RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810


>gi|88859277|ref|ZP_01133917.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           tunicata D2]
 gi|88818294|gb|EAR28109.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           tunicata D2]
          Length = 899

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/813 (31%), Positives = 392/813 (48%), Gaps = 73/813 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T     +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDRANEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +V+  +L  ++++ VD+ D Y+  +  P V P+K PNLL NG SGIAVGMAT+
Sbjct: 122 YTEIRMARVSHELLADLEKETVDYVDNYDGTEKIPAVLPTKIPNLLVNGASGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI+NP+I+I++L++YI GPDFPT  II   ++ I ++Y+ GRG  
Sbjct: 182 IPPHNLNEVINGCLALINNPDITIDELIDYIPGPDFPTAAIIS-GKKGIEQAYKTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  VE   RG   I+V E+PYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 YIRAKAEVETDERGKETIIVHELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+T F +NM  L     P+++ L  +L  ++ HRRE
Sbjct: 301 RIVVEIKRGEVGEVVLNNLYAQTSMQTVFGMNMVALD-NGQPKLLNLKEMLHAFVVHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R   L+GL IA  NID II +IR    P                 
Sbjct: 360 VVTRRTVFDLRKARDRAHTLEGLAIALANIDPIIELIRRSPTPAEAKEALLARPWDLGHV 419

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                  +   ++ L+  Q  AIL LRL  L  LE  +I +E  
Sbjct: 420 QSMLERTGESNVARPEWLDAELGIRDGQYHLSPQQAQAILELRLHRLTGLEHEKILAEYQ 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            LL    ++  +L+S ++    I  E+   KE +                          
Sbjct: 480 ELLDLIAELLHILSSPERLLEVIRDELALAKEQYGDERRTVITAAAHDISLEDLINEEDV 539

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            +       V         + +      SA   K+ D ++  L A+T D IL  ST G+ 
Sbjct: 540 VVTLSHEGYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRL 599

Query: 573 YTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y L    L   S    G+ I  L+ L  N+ I        Y+    + + ++ G      
Sbjct: 600 YWLKVYQLPLASRAARGKPIINLLPLEANERITAILPVREYEENKYIFMATAFGTVKKTP 659

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--------- 677
            +        G   + ++  + +  V    G + + +  +  K++ F   +         
Sbjct: 660 LTAYSRQRSSGIIAVNLNEGDSLIGVDITDGTNEIMLFSDAGKVVRFKESEESEVLDENG 719

Query: 678 ----------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
                           +  M R   GVR     +G     +     +G + +      Y 
Sbjct: 720 NLVLDENGQPEIKFKGVRPMGRTATGVRGIKMGEGQRVVSLIVPKNDG-SILTVTENGYG 778

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N        R   G +  K   R+GK + +
Sbjct: 779 KRTNLEDYPSKSRATQGVVSIKVSERNGKVVGA 811


>gi|197335945|ref|YP_002156004.1| DNA gyrase, A subunit [Vibrio fischeri MJ11]
 gi|197317435|gb|ACH66882.1| DNA gyrase, A subunit [Vibrio fischeri MJ11]
          Length = 878

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/800 (33%), Positives = 407/800 (50%), Gaps = 67/800 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM  +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA I+N EI+I++L+ YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKANIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++ L+ ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYSLTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IRN   P            
Sbjct: 355 DHRREVVTRRTIFELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKEGLISRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 DLGNVASMLERAGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++++        RRT   E+  A   
Sbjct: 475 DEYKALLDEIAELMHILASTERLMEVIRDELVMVRDMYGDE-----RRT---EIGAAIHD 526

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              + +I +E + V +S  G+          + +      SA   K+ D ++  L A+T 
Sbjct: 527 IDMEDLITQEDVVVTLSREGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTH 586

Query: 561 DRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
           D IL  ST GKAY+L    L        G+ I  ++ L   + I        Y     + 
Sbjct: 587 DNILCFSTRGKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKFIF 646

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
           + +  G        +       G   + +  ++ +  V    G   + +  +  K++ F+
Sbjct: 647 MATGDGTVKKTSLDQFAKVRANGLIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVRFN 706

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            +Q+  M R   GVR            +     EG   +      Y +           R
Sbjct: 707 EEQVRGMGRTASGVRGMKLSGEDQVVSLIVPSNEGD-ILTVTQNGYGKRTVLSEYPAKSR 765

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
              G +  K   R+G  + +
Sbjct: 766 ATQGVVSIKVSERNGSVVGA 785


>gi|53724794|ref|YP_102248.1| DNA gyrase subunit A [Burkholderia mallei ATCC 23344]
 gi|124385239|ref|YP_001026943.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10229]
 gi|126450865|ref|YP_001079770.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10247]
 gi|254176796|ref|ZP_04883453.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399]
 gi|254360034|ref|ZP_04976304.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280]
 gi|52428217|gb|AAU48810.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 23344]
 gi|124293259|gb|ABN02528.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10229]
 gi|126243735|gb|ABO06828.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10247]
 gi|148029274|gb|EDK87179.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280]
 gi|160697837|gb|EDP87807.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399]
          Length = 866

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/789 (30%), Positives = 379/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACLYLLNNPQASVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-NQPKLLNLREILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------------- 409
           + ++    R  +L+GL +A  NIDE IAII+                             
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRA 427

Query: 410 ------------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F  +             +        
Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + ++ G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFSADKYVFMTTALGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  +  K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR     D      +     E  + + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+G+ +++
Sbjct: 788 ERNGRVVAA 796



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDD 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 738 AQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|299066868|emb|CBJ38063.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum CMR15]
          Length = 885

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/792 (30%), Positives = 383/792 (48%), Gaps = 63/792 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E
Sbjct: 130 IAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLRE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NP+ ++++L+E I  PDFPT G I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLHNPDATVDELIELIPAPDFPTAG-IIYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVD-GQPRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  IL+GL +A  NIDE IAII+    P                        
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLVREMLSRA 427

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F                +          
Sbjct: 488 VMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLITPQDLV 547

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 548 VTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLY 607

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    +        G  I  +  L+  + I        +D    + + +SKG       
Sbjct: 608 WLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMSTSKGTVKKTAL 667

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E     + G   + +   + +       G H V +  +  K + F  + +  M R  +G
Sbjct: 668 TEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG 727

Query: 687 VRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           VR  + ++G     +     E           + + +    Y +           RG  G
Sbjct: 728 VRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYTRHGRGTKG 787

Query: 738 SLVPKGFPRSGK 749
            +  +   R+GK
Sbjct: 788 MIAIQTSERNGK 799



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 661 TVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP 720

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L   Q ++   V  +             +L  +  G       SE  
Sbjct: 721 MGRQARGVRGM-NLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYT 779

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     + + +   +    D + ++     L+   +D+I EM R  +GV
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAAALVAAEDEIMLITTGGVLIRTRVDEIREMGRATQGV 839

Query: 688 RLQSYKDG 695
            L +  +G
Sbjct: 840 TLIAVGEG 847


>gi|291278437|ref|YP_003495272.1| DNA gyrase subunit A [Deferribacter desulfuricans SSM1]
 gi|290753139|dbj|BAI79516.1| DNA gyrase, A subunit [Deferribacter desulfuricans SSM1]
          Length = 802

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/753 (32%), Positives = 405/753 (53%), Gaps = 16/753 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ +  V++  +L++ YL YA+S I  RA+PD+RDG KPVHRR+++AM EMG+     
Sbjct: 1   MKEKGIIEVNIEDSLKDSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYEMGVLHNKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG+IDGDSAAA RY
Sbjct: 61  YKKSARIVGDVIGKYHPHGDSAVYDTLVRMAQDFSMRYPLVDGQGNFGSIDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RMT++AE +L  +D+D VDF   Y+    EPVV P++ PN+L NGTSGIAVGMAT+I
Sbjct: 121 TEVRMTKIAEEMLSDIDKDTVDFSPNYDGSLKEPVVLPTRIPNMLINGTSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A + +IDNP  + E++L +I GPDFPT G I+  ++ I+++Y+ G+G  +
Sbjct: 181 PPHNLTEVIDALVYIIDNPSNTDEEILNFIKGPDFPTYG-IIYGKDEILKAYKTGKGVIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+   E    G   +VVTE+PYQV K+ LIEKIA L   K+I  + D+RDES  D   
Sbjct: 240 VRAKVKKEITTTGKELLVVTELPYQVNKANLIEKIANLARDKKINGIVDLRDESDRDGIR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + D+++  ++  + ME  + +N+  +     P+ + L  +L+++L HR+ V
Sbjct: 300 IVIELKRGENADIIINQLYKFTQMEIAYGINLVGIV-NNKPKTLTLRDLLEQFLEHRKVV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F ++  + R+ IL+GL+ A  NIDE++A+I++     + K  +++RF L++ Q 
Sbjct: 359 VIRRTKFLLKKAEDRLHILEGLIKAVENIDEVVALIKSSKNAAEAKEKLMNRFELSDKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL  L  LE  ++++E    L   E   S+LN+       I  E+ ++K  +  
Sbjct: 419 QAILDMRLHRLTGLEIEKLRNEYKETLKNIEFYKSILNNKSVLMGIIKEELIDIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++            +  +       +  +     +S K      +     + 
Sbjct: 479 ERRTQIVNSSEEINIEDLIPDDEVVVTLSYQGFIKRTPLSNFKSQKRGGKGKTGAGNVKE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAF 606
           D +K  L       ++  +  G+ + L    L       +      LI L+ ++ +    
Sbjct: 539 DFIKDILVTTNHSTLMFFTNKGRIHYLKVYELPELARDAKGKYIANLISLDKDEKVAAMI 598

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVA 662
               +D    + + + +G           +  R G   +K+   +++     ++  D + 
Sbjct: 599 STKEFDRDRYIFMCTKEGIVKKTSLDAFSS-GRSGIIAIKLRDGDEIVDASLISKNDSIF 657

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYN 720
           +     K + F+  ++  M R   GV+  +  KD  +  +   K       +    + + 
Sbjct: 658 ISTRKGKCIQFNSSEVRNMGRNATGVKGITLTKDDKVVSMEAVKGDP--LILTVTTKGFG 715

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +S       +  RGG G  + K   R+G+ + +
Sbjct: 716 KSSLITDYRIQSRGGKGIKLSKVTERTGEIVGA 748



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 72/176 (40%), Gaps = 8/176 (4%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +  + +  S    + A+  ++GD +  A      D I + +  GK     +  + +   
Sbjct: 619 KKTSLDAFSSGRSGIIAIKLRDGDEIVDASLISKNDSIFISTRKGKCIQFNSSEVRNMGR 678

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           +   +   I L  +  +V+         +L V++KG       ++    +R GK  +K+S
Sbjct: 679 NATGV-KGITLTKDDKVVSMEAVKGDPLILTVTTKGFGKSSLITDYRIQSRGGKG-IKLS 736

Query: 646 S----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
                  ++    +V   D V ++ ++ K++  S+  IP + R  +GV+L    D 
Sbjct: 737 KVTERTGEIVGARQVKLEDDVMLISKSSKVIRLSVSDIPILGRDTQGVKLMGLDDE 792


>gi|59711811|ref|YP_204587.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri
           ES114]
 gi|59479912|gb|AAW85699.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri
           ES114]
          Length = 878

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/800 (33%), Positives = 407/800 (50%), Gaps = 67/800 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM  +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA I+N EI+I++L+ YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKANIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++ L+ ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYSLTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +I+N   P            
Sbjct: 355 DHRREVVTRRTIFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 DLGNVASMLERAGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++++        RRT   E+  A   
Sbjct: 475 DEYKALLDEIAELMHILASTERLMEVIRDELVMVRDMYGDE-----RRT---EIGAAIHD 526

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              + +I +E + V +S  G+          + +      SA   K+ D ++  L A+T 
Sbjct: 527 IDMEDLITQEDVVVTLSREGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTH 586

Query: 561 DRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
           D IL  ST GKAY+L    L        G+ I  ++ L   + I        Y     + 
Sbjct: 587 DNILCFSTRGKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKFIF 646

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
           + +  G        +       G   + +  ++ +  V    G   + +  +  K++ F+
Sbjct: 647 MATGDGTVKKTSLDQFAKVRANGLIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVRFN 706

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            +Q+  M R   GVR            +     EG   +      Y +           R
Sbjct: 707 EEQVRGMGRTASGVRGMKLSGEDQVVSLIVPSNEGD-ILTVTQNGYGKRTVLSEYPAKSR 765

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
              G +  K   R+G  + +
Sbjct: 766 ATQGVVSIKVSERNGSVVGA 785


>gi|300723734|ref|YP_003713041.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630258|emb|CBJ90909.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 879

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/814 (33%), Positives = 407/814 (50%), Gaps = 81/814 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA ID+  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIDDENISIEGLMEYIPGPDFPTAA-IINGRRGIQEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKIYIRARAEVEADEKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKLLNLKDILSAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID +I +IR    P           
Sbjct: 355 VCHRREVVTRRTIFELRKARERAHILEALAIALANIDPVIELIRRASTPAEAKASLVSQP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVAAMLEQAGDDAARPEWLEPEYGIHEGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE ++ +     RRT   E S    
Sbjct: 475 LDEYRELLKVIAELLFILENPERLMEVIREELLAIKEQYNDA-----RRTELTENSAD-- 527

Query: 508 ATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S++G+          + +      SA   KE D ++  L A+T
Sbjct: 528 -INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARTKEEDFIERLLVANT 586

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  S  GK Y +    L        G  I  L+ L  N+ I        Y+    +
Sbjct: 587 HDTILCFSNKGKMYWMKVYQLPEASRGARGRPIVNLLPLGQNERITAILPVREYEDGLNI 646

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
            + ++ G     + SE       G   + ++  +++  V    G + V +     K++ F
Sbjct: 647 FMATASGIVKKTKLSEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAQGKVVRF 706

Query: 674 -------------SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
                         +  +  M R   GVR      G     +     EG   +      Y
Sbjct: 707 LEEEEETLEDGTVRVKGVRAMGRTATGVRGIKLSAGDKVVSLIIPRGEGE-ILTVTENGY 765

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   +       R   G +  K   R+G  + +
Sbjct: 766 GKRTAESEYPTKSRATQGVISIKVSERNGNVIGA 799


>gi|157144816|ref|YP_001452135.1| DNA gyrase subunit A [Citrobacter koseri ATCC BAA-895]
 gi|157082021|gb|ABV11699.1| hypothetical protein CKO_00543 [Citrobacter koseri ATCC BAA-895]
          Length = 878

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+    LA ID+ +ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLKEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKEIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRS 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVASMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +   +       RG  G + 
Sbjct: 715 GRTATGVRGIKLAGEDSVVSLIIPRGEGA-ILTVTQNGYGKRTAEGEYPTKSRGTQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 41.3 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     DS+   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGEDSVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                  G   +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|229511173|ref|ZP_04400652.1| DNA gyrase subunit A [Vibrio cholerae B33]
 gi|229351138|gb|EEO16079.1| DNA gyrase subunit A [Vibrio cholerae B33]
          Length = 894

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/817 (32%), Positives = 400/817 (48%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E   +  +L S ++    I  E+  ++  FS +        T         A
Sbjct: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   L +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVV 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     EG   +    
Sbjct: 715 DENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +  +        RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810


>gi|124008334|ref|ZP_01693029.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134]
 gi|123986123|gb|EAY25959.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134]
          Length = 865

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/757 (31%), Positives = 398/757 (52%), Gaps = 20/757 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
               +  +++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++ MS++GL F   F
Sbjct: 4   SSSRIIPINIEDEMKSAYIDYAMSVIISRALPDVRDGLKPVHRRVLYGMSDLGLMFNKPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD SVYD++VR+AQP+  RYPL+ GQGNFG+IDGDS AA RYT
Sbjct: 64  KKSARIVGEVLGKYHPHGDASVYDTMVRMAQPWSLRYPLVDGQGNFGSIDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +VA+ +L  +++D +DF+  ++E   EP V P K P+LL NGTSGIAVGMAT++P
Sbjct: 124 EARLKRVADELLSDLNKDTIDFQPNFDESLKEPTVLPCKIPHLLINGTSGIAVGMATNMP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +A +DN +I++E+L++YI  PDFPTGG I+   + + ++   GRG   +
Sbjct: 184 PHNLTEVVDGIIAYLDNNDITVEELIQYIPAPDFPTGG-IIYGYQGVKKAMLTGRGRVVI 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R    +E    G   I+VTEIPY V K+ LIEK A L+  KRI  + DIRDES      +
Sbjct: 243 RGVAEIETTKSGRERIIVTEIPYLVNKANLIEKTAHLVQEKRIEGISDIRDESDRTGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           ++   R   P + +  ++  + +++ F +N   L     P+++ L  ++  ++ HR EV+
Sbjct: 303 VYELKRDAVPMVTLNQLYKYTALQSSFGVNNVALVK-GRPEILNLRDMIYHFVEHRHEVI 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
           +RR+ F ++    R  IL+GLLIA  NIDE+I +IR     +        +F L+E Q  
Sbjct: 362 YRRTQFELKEAKARQHILEGLLIALDNIDEVITLIRASKDGETAKNALIEKFELSEIQAK 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  +E  +I +E   +    ++++++L     + + I  E+ E+K+ +  +
Sbjct: 422 AILDIRLQRLTAMERDKIVAEHKQISELIKELEAILADKLLRVDIIKEELTEMKDRYGDA 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                                +  +       +  ++    R+     V       K+ D
Sbjct: 482 RRTDIEHMADDLTDEDMIPVEEMVITISHFGYIKRTSLDEYRTQNRGGVGSRGTSKKDDD 541

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF- 606
             +    A T D +L+ +  GK + +   N+       +  AIQ L+ +     I     
Sbjct: 542 FTEHLFVASTHDYLLIFTNSGKVFWIKGYNIPEVAKTAKGRAIQNLLQMEKGDSIRAVIN 601

Query: 607 -------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   Y+    L++ + KG              + G   + ++ ++++  V    G+
Sbjct: 602 VKQLQDPDYNQNHYLVMCTEKGIIKKTRLEAFSRPRQNGIHAITINEDDQLLDVKLTNGE 661

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG--ISDVICFKICEGLTWIDSA 715
            ++ +   + + + F  DQ+  M R   GVR  +       +  ++C    +  + +  +
Sbjct: 662 NNIILAIRSGRAIHFHEDQVRSMGRTAAGVRGITLDGDDNRVVGMVCVA-RDDASLLVVS 720

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +  +     +  RGG G +  +   ++G+ ++
Sbjct: 721 ETGYGKRSSIEDYRITNRGGKGVITMQITDKTGRLVA 757



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 71/237 (29%), Gaps = 7/237 (2%)

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           R ++ +         R     +  +         ++      ++          +     
Sbjct: 582 RAIQNLLQMEKGDSIRAVINVKQLQDPDYNQNHYLVMCTEKGIIK-KTRLEAFSRPRQNG 640

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           + A+   E D L      +  + I+L    G+A       + S       ++ +     +
Sbjct: 641 IHAITINEDDQLLDVKLTNGENNIILAIRSGRAIHFHEDQVRSMGRTAAGVRGITLDGDD 700

Query: 600 QDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVV- 654
             +V           LLVVS  G        +     R GK  + +   +   ++  +  
Sbjct: 701 NRVVGMVCVARDDASLLVVSETGYGKRSSIEDYRITNRGGKGVITMQITDKTGRLVAIKE 760

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT 710
            V  D + ++ +    +  S+  +  M R  +GVRL    +      +     E L 
Sbjct: 761 AVDTDDLILITKTGLAIRMSMSDMRVMGRATQGVRLIKLHEDDSIASVAKVDAESLL 817


>gi|304405882|ref|ZP_07387540.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
 gi|304345125|gb|EFM10961.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
          Length = 825

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 407/760 (53%), Gaps = 30/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 +K   +   + + ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+    
Sbjct: 3   EEQSSQIKDRDIGIEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  R  L+ G GNFG+IDGD AAA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRNMLVDGHGNFGSIDGDMAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A  +L+ +++D VDF   Y+ E+ EPVV PS++PNLL NG +GIAVGMAT+
Sbjct: 123 YTEARLSKIAMELLRDLNKDTVDFAPNYDGEEHEPVVLPSRYPNLLVNGVTGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +   ALI NP+I+  +L+EYI GPDFPT G +      I ++Y  GRG  
Sbjct: 183 IPPHNLREVIDGVQALIVNPDITSIELMEYIKGPDFPTYGYV-MGHSGIRQAYTTGRGSV 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR  + E   G   I+V E+PYQV K+RL+EKIAEL+  K+I  + D+RDES  +  
Sbjct: 242 TMRARA-IIEDNGGKARIIVHELPYQVIKARLVEKIAELVREKKIEGITDLRDESDRNGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R ++P++++ +++  + M++ F +NM  L   R P+V+ L  +L  +L H+ E
Sbjct: 301 RVVIELRRDVNPNVVLNNLYKQTQMQSTFGINMLALV-NREPKVLNLRDMLYHYLQHQIE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQ 427
           ++ RR+ + ++  + R  IL+GL IA  ++DE+IA+IR             +RFSL+  Q
Sbjct: 360 IIRRRTEYDLKKAEARAHILEGLRIALDHLDEVIALIRGSRTADEAREGLITRFSLSLEQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I++E   LLA+  +  ++L   +   + I+ E+ E+KE F 
Sbjct: 420 AQAILDMRLQRLTGLERDKIEAEYAELLAKIAEYKAILADEQLVLDIISTELNEIKERFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   E++  +   L + +I +E + + I++ G+++          +     
Sbjct: 480 D-----DRRT---EITIGEDEILDEDLIPREDVIISITHSGYVKRLPVTTYRSQRRGGRG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           +  +  K+ D ++    ++T   +L  +  GK Y L A  +        G  I  L+ + 
Sbjct: 532 VIGMDTKDDDFVEHLFVSNTHHYLLFFTDKGKVYRLKAYEIPDLSRTARGTPIINLLQIE 591

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +D+   L   + +G        +     + G   + +  ++ +  V 
Sbjct: 592 QGEVVNAVIPVEAFDNDKYLFFATRQGVVKKTPLDDYANIRKVGLIAISLREDDDLISVK 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G+  + +       + F    +  M R   GV+     +      +     E    +
Sbjct: 652 LTDGNQEIIMGTSQGMSIRFPEQDVRSMGRSATGVKGIQLDEEDKVIGMEIVHPEND-VL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        +  RGG G        ++G  + 
Sbjct: 711 IVTSKGYGKRTPVNEYRIQSRGGKGIKTLNVTDKNGTIVG 750



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 69/174 (39%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
               V L A+  +E D L           I++ ++ G +   P  ++ S       +   
Sbjct: 630 NIRKVGLIAISLREDDDLISVKLTDGNQEIIMGTSQGMSIRFPEQDVRSMGRSATGV-KG 688

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L+    ++   +      +L+V+SKG       +E    +R GK    ++  +K   +
Sbjct: 689 IQLDEEDKVIGMEIVHPENDVLIVTSKGYGKRTPVNEYRIQSRGGKGIKTLNVTDKNGTI 748

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  V  D  + ++  +  ++  S+D I  M R  +GV+L + ++      + 
Sbjct: 749 VGLKVVENDEDLMIMTASGTMIRTSMDGISTMGRNTQGVKLINIREDDAVSTVT 802



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 2/123 (1%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            +  +   E D +      H  + +L++++ G     P          G+ I+ L   + 
Sbjct: 685 GVKGIQLDEEDKVIGMEIVHPENDVLIVTSKGYGKRTPVNEYRIQSRGGKGIKTLNVTDK 744

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           N  IV   V ++   L+++++ G         I    R   G   + +  ++ +  V +V
Sbjct: 745 NGTIVGLKVVENDEDLMIMTASGTMIRTSMDGISTMGRNTQGVKLINIREDDAVSTVTRV 804

Query: 657 TGD 659
             +
Sbjct: 805 AKN 807


>gi|1170143|sp|P41513|GYRA_ERWCA RecName: Full=DNA gyrase subunit A
 gi|525202|emb|CAA56777.1| DNA topoisomerase (ATP-hydrolysing) [Pectobacterium carotovorum]
          Length = 878

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/793 (33%), Positives = 395/793 (49%), Gaps = 53/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  IS+E L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKIYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++T F +NM  L     P++MPL  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSQTQLQTSFGINMVAL-HQGQPKIMPLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   R+ LTE Q  AIL+LRL+ L  +E  ++
Sbjct: 415 WELGSVATMLERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LLAE  ++  +LNS ++    I  E+   K  +S          T         
Sbjct: 475 LDEYKELLAEIAELLYILNSPERLMEVIREELEAFKTQYSDERRTEITANTADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E  +    G   + ++  +++  V    G D   +     K++ FS   +  M
Sbjct: 655 VKKTALTEF-SRHVSGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM 713

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  + +       +     EG   +      + +           R   G + 
Sbjct: 714 GRTATGVRGINLQGEDRVVSLIIPRGEGD-ILTVTQNGFGKRTAVSEYPTKSRATKGVIS 772

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 773 IKVSERNGKVVGA 785


>gi|325922433|ref|ZP_08184201.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865]
 gi|325547090|gb|EGD18176.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865]
          Length = 903

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/819 (31%), Positives = 387/819 (47%), Gaps = 80/819 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM  +G     A+
Sbjct: 4   TAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHVLGAHSNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYT
Sbjct: 64  FKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP
Sbjct: 124 ESRMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALID PE+ +E L+EYI GPDFPT G I+     I   YR GRG  R+
Sbjct: 184 PHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAG-IINGTAGIAAGYRTGRGRVRM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +
Sbjct: 243 RAKADVEVADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME+ F +NM  L     PQ+M L  +L+ ++ HRREV+
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALID-GRPQLMNLKQMLQAFIRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P+                  
Sbjct: 362 TRRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGA 421

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + LTE Q   IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLGAAGAEASKPEDLPPGVGLIKGFYQLTEVQASQILEMRLHRLTGLEQEKLTDEYKQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
              + +  +L +       I  E+  ++E +        R +          +     + 
Sbjct: 482 EVIQGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLISPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ +      SA   KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
           P   L        G  I   I L   + +        Y     +   +  G       SE
Sbjct: 602 PVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    GD  V +   N K + F    +  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVR 721

Query: 689 LQSYKDG-------------------------------GISDVICFKICEGL---TWIDS 714
                 G                                ++D    ++ E       + +
Sbjct: 722 GIRLTKGEEVVSLIVAERAAGVESDVEEESVEDVVETTDVADAAVIEVAENDDTAYILTA 781

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+GK + +
Sbjct: 782 TENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 5/105 (4%)

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVT 657
           ++     D T  +L  +  G       +E     R  +  + +     + + ++ V+   
Sbjct: 766 VIEVAENDDTAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGG 825

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            D V ++ +   L+     +I  + R  +GV L     G     +
Sbjct: 826 TDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAV 870


>gi|91227187|ref|ZP_01261646.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01]
 gi|91188715|gb|EAS75003.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01]
          Length = 906

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/825 (32%), Positives = 412/825 (49%), Gaps = 92/825 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVSAMLERAGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ F  +     RRT   E++ A   
Sbjct: 475 GEYKTLLEEIAELMHILASTERLMEVIREELEAVRDGFGDA-----RRT---EITAASHD 526

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              + +I +E + V +S+ G+          S +      SA   K+ D ++  L A+T 
Sbjct: 527 IDMEELIAREDVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTH 586

Query: 561 DRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLL 615
           D IL  ST GK Y L    L   S    G+ I  ++ L   + I        +     + 
Sbjct: 587 DNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDEFSEDKFIF 646

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + +  G       ++       G   + +  ++ +  V    G+  + +  +  K++ F 
Sbjct: 647 MATGDGTVKKTPLNQFANVRSNGLIAVNLREDDSLIGVDITNGENEIMLFSKAGKVVRFK 706

Query: 675 IDQ-------------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +                         +  M R   GVR     +      +     EG
Sbjct: 707 EAEEIPVLDENGKPVLDENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLIVPSHEG 766

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +      Y +           RG  G +  K   R+G  + +
Sbjct: 767 D-ILTVTENGYGKRTALSEYPTKGRGTQGVVSIKVSERNGPVVGA 810


>gi|325123121|gb|ADY82644.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 904

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/827 (30%), Positives = 408/827 (49%), Gaps = 95/827 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  DNP ISIE L+EYI GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++  
Sbjct: 240 IRGKYHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F+ + +E  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVVVNNLFLNTQLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ F ++    R  IL+GL +A  NIDEII  I+    P                 
Sbjct: 359 VVTRRTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWADGGV 418

Query: 420 -------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV AIL LRL  L  LE+ ++ 
Sbjct: 419 VSLLEKAGAISVRPDEIEGEDPNRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN        I  E+  V + +        RRT   E   +   
Sbjct: 479 AEYTEILGQIAELTAILNDFNLLMAVIREELALVLQQYGD-----GRRTEIIE---SRID 530

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+         ++ +      SA   K+ D ++  + A   
Sbjct: 531 FSREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             +L  +  GK Y L    +       +   I  L+ L+ N+ +        +     + 
Sbjct: 591 ATVLCFTNVGKVYRLRVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLTEFPENHYVF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + ++ G    V+  +       G   ++++ E+ +  V    G+  + +     K + F+
Sbjct: 651 MATASGTVKRVDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFA 710

Query: 675 IDQIPEMSR-GKGVRLQS-------YKDGGISD--------------------VICFKIC 706
              +  M R  KGVR            +                         V    + 
Sbjct: 711 ETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDESDDNDDSADSNLVSRIVSLVVVP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 771 ETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT 657
            IV+  V   T ++L  S+ G       ++     R GK  + + + E   ++   V + 
Sbjct: 762 RIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSID 821

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFK 704
               + ++ +   L+     ++    R  +GVRL    ++  +  V+  +
Sbjct: 822 ETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871


>gi|209519336|ref|ZP_03268135.1| DNA gyrase, A subunit [Burkholderia sp. H160]
 gi|209500220|gb|EEA00277.1| DNA gyrase, A subunit [Burkholderia sp. H160]
          Length = 860

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/782 (30%), Positives = 379/782 (48%), Gaps = 56/782 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NPE +I++L+E I  PDFPT G I+     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  +L  +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEMLTCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------------------ 414
            R  +L+GL +A  NIDE IA+I+    P                               
Sbjct: 359 ERGHVLEGLAVALANIDEFIALIKAAPTPPIAKQELMSRAWDSSLVREMLSRAETDNASA 418

Query: 415 ----------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGREAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  +K  F  +             +       +  +    
Sbjct: 479 ADLLDILARPERISAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ K       A   KE D +     A+T D IL  S  G+ Y +   
Sbjct: 539 AGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVY 598

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G  I  +  L   + I        + +   + + ++ G            
Sbjct: 599 EVPQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSADKFVFMATALGTVKKTPLEAFSR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             RKG   + +   + +       G H V +  ++ K + F  + +  M R  +GVR   
Sbjct: 659 PLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQ 718

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +DG     +     E  + + +    + +           RG  G +  +   R+GK +
Sbjct: 719 LEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVV 778

Query: 752 SS 753
           ++
Sbjct: 779 AA 780



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 6/179 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 662 KGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 721

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
               I      D    +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 722 GQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 781

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG-GISDVICFKICEGLT 710
            V  +  + ++     L+   + +I EM R  +GV L S  +G  +S +      EG +
Sbjct: 782 LVDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEGES 840


>gi|315126544|ref|YP_004068547.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp.
           SM9913]
 gi|315015058|gb|ADT68396.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp.
           SM9913]
          Length = 899

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/814 (30%), Positives = 391/814 (48%), Gaps = 74/814 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDLANEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +++  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI NPE++I +L++YI GPDFPT   I+  ++ I ++Y+ GRG  
Sbjct: 182 IPPHNLTEVVNGCLALIQNPELTITELMDYIPGPDFPTAA-IINGKKGIEQAYQTGRGKV 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D 
Sbjct: 241 YMRARADIETDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++ +++  + ++T F +NM  L     P+   L  +L+E++ HRR
Sbjct: 301 MRIVIEIKRGDVGEVILNNLYSQTQLQTVFGMNMVALI-NNQPKCFNLKEMLEEFIIHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------- 415
           EV+ RR+ F ++    R   L+GL IA  NID II +IR    P                
Sbjct: 360 EVVTRRTVFDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKVALTARPWELGN 419

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ ++E Q  AIL+LRL  L  LE  +I +E 
Sbjct: 420 VKAMLDKAGEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +LL    ++  +L + ++    I  E+ E+KE +                         
Sbjct: 480 QSLLELIAELLFILANPERLMEVIRDELVEIKEQYGDERRTEINAAAHDISLEDLINEEN 539

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   K+ D ++  L A+T D IL  ST G+
Sbjct: 540 VVVTLSHEGYVKYQALTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGR 599

Query: 572 AYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L   S    G+ I  L+ L  ++ I        Y+    + + ++ G     
Sbjct: 600 LYWLKVYQLPLASRAARGKPIVNLLPLEADERITAILPVRDYEDDKYIFMATAFGTVKKT 659

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ-------- 677
             +        G   + ++  + +  V    G + + +  +  K++ F   +        
Sbjct: 660 PLTAYSRQRASGIIAVNLNEGDSLIGVDITDGSNEIMLFTDAGKVVRFKEAEETAVVDEN 719

Query: 678 -----------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
                            +  M R   GVR     D      +     +G   +      Y
Sbjct: 720 GNPVLDEEGKPEIRFKGVRPMGRTATGVRGIKMPDDQRVVSLIVPKNDGA-ILTVTENGY 778

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           R   G +  K   R+G  + +
Sbjct: 779 GKRTQLEDYPSKSRATQGVVSIKVSERNGAVVGA 812


>gi|254521504|ref|ZP_05133559.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14]
 gi|219719095|gb|EED37620.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14]
          Length = 904

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/816 (32%), Positives = 387/816 (47%), Gaps = 77/816 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+       +
Sbjct: 4   TAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGDQSVYD+LVRLAQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 64  FKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP
Sbjct: 124 EARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALIDNP+I ++ L+EYI GPDFPT G I+     IV  YR GRG  R+
Sbjct: 184 PHNLSESINACIALIDNPDIDVDGLMEYIPGPDFPTAG-IINGTAGIVAGYRTGRGRVRI 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D   +
Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME+ F +NM  L     PQ+M L  +L+ ++ HRREV+
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVD-GRPQLMNLKQMLEAFVRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P                   
Sbjct: 362 TRRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGA 421

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + LTE Q   IL +RL  L  LE+ ++  E   LL
Sbjct: 422 MLGAAGAEASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
                +  +L    +    I  E+  VK  F        R +          A     + 
Sbjct: 482 EVIAGLIHILEDPDRLLQVIREELVNVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                 V        R+ +      SA   KE D ++     +T D +L  ++ GK + L
Sbjct: 542 VSHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
           P   L        G  I   I L   + +        Y     +   +  G        E
Sbjct: 602 PVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYADGQFVFFATKNGTVKKTPLGE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V +  G+  + +   N K + F  D++  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDEGDALVGVGRTDGERDILLFASNGKTVRFGEDKVRSMGRTATGVR 721

Query: 689 LQSYKDGGISDVICFKICEG-------------------------------LTWIDSAGR 717
                 G     +      G                                  + +   
Sbjct: 722 GIKMPAGEEVVSLIVAESAGGIEDENEDDNGVEEIAANGDAVIDGADDASVQYILTATEN 781

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RG  G +  +   R+GK +++
Sbjct: 782 GYGKRTPLPDYPRKGRGTQGVIGIQTTERNGKLVAA 817



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 8/106 (7%)

Query: 604 TAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKV 656
                        +L  +  G        +     R  +  + +     + + +  V+  
Sbjct: 762 AVIDGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERNGKLVAAVLMG 821

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +GD V ++ +   L+     +I  + R  +GV L           +
Sbjct: 822 SGDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAV 867


>gi|315640351|ref|ZP_07895467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           italicus DSM 15952]
 gi|315483887|gb|EFU74367.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           italicus DSM 15952]
          Length = 823

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/759 (31%), Positives = 397/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      ++N+ +V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---AKQNIHSVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D VDF+  Y++ + EP V P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKLAVEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG IV  +  I  +Y  
Sbjct: 178 GMATNIPPHNLNEVIAAIDLLMDNPDVTTSELMEVLPGPDFPTGG-IVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR R  ++E+  G   I++TE+PY V K++LIE+I+EL   KRI  +  +RDES
Sbjct: 237 GKGSIIVRGRVEIDEMSNGKERILITELPYMVNKAKLIERISELHRDKRIEGITALRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +     ++    R +   +++ +I+ ++ +++ F  NM  +    VP+++ L  IL+ ++
Sbjct: 297 SRKGMRIVIEVRRDVSASVILNNIYKMTALQSSFGFNMLAIEK-GVPKILSLKRILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++EV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR           ++ RF 
Sbjct: 356 EHQKEVITRRTIFDKKKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDLAKATLIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RLR L  LE  +I++E   LLA    +  +L   ++    I  E+ ++
Sbjct: 416 FSDRQAQAILDMRLRRLTGLEREKIENEYQELLAFIADLTDILARPERVVQIIKEELLDL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F  +            +   D    ++ +I       +        R+ +     + 
Sbjct: 476 GKRFGDARRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRVANTEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +       +   +  L+ ++ +
Sbjct: 536 GMGVHDEDFVKTLVSCSTHDTLLFFTNAGKVYKAKGYEIPEYGRTAKGIPVINLLGIDSS 595

Query: 600 QDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I           +   L   +  G     +          G   + +  ++++  V++
Sbjct: 596 ERIQAIIAVKNHEAAEQYLFFTTKLGVVKRTDVQAFSNIRSNGLIAIGLKEQDELVNVLQ 655

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G D + +       + F+   + +M R   GVR    ++G           E    + 
Sbjct: 656 TKGSDTIIIGTHGGYSVTFAESVVRDMGRAAAGVRGIRLREGDYVVGTAILTPESE-VLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G       P++G    
Sbjct: 715 ITENGYGKRTASSEYPVKGRGGKGIKTANITPKNGPLAG 753



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 5/145 (3%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
            +++ T G      A +++   G   A    I L     +V   +     ++LV++  G 
Sbjct: 661 TIIIGTHGGYSVTFAESVVRDMGRAAAGVRGIRLREGDYVVGTAILTPESEVLVITENGY 720

Query: 623 AFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 SE     R GK      +   +     L      + + V+ +   ++ F++  +
Sbjct: 721 GKRTASSEYPVKGRGGKGIKTANITPKNGPLAGLTTVSGEEDILVITDKGVIIRFNVATV 780

Query: 679 PEMSRGK-GVRLQSYKDGGISDVIC 702
            +  R   GVRL   ++      + 
Sbjct: 781 SQTGRATLGVRLMKMENEAKVVTMA 805


>gi|167461557|ref|ZP_02326646.1| DNA gyrase subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 790

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/761 (31%), Positives = 414/761 (54%), Gaps = 30/761 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
                  VK V + F +   ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+   
Sbjct: 2   TEESRSQVKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGD AAA 
Sbjct: 62  KPHKKSARIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++A  +L+ ++++ +D+   Y+ E+ EPVV P++FPNL+ NG+SGIAVGMAT
Sbjct: 122 RYTEARLSKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  L LI+NP+++  +L+  I GPDFPTG  I+  RE I ++Y  GRG 
Sbjct: 182 NIPPHNLGEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYIL-GREGIRQAYSTGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  +EEV   +  I+V E+PYQV K+RLIEKIAEL+  K+I  + D+RDES  + 
Sbjct: 241 VTMRAKTTIEEVNNKA-RIIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R ++P++++ ++F  + +++ F +    L     P+V+ L  +L  +L H+R
Sbjct: 300 MRIVIELRRDVNPNVVLNNLFKHTALQSNFGIINIALV-NGEPKVLNLKEMLYYYLEHQR 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++  + R  IL+GL IA  ++DE+IA+IR+       +  ++ +F L+ +
Sbjct: 359 VVIRRRTEYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQFELSHD 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I++E   L+A+  ++ ++L   +     I+ E+++++  +
Sbjct: 419 QAQAILDMRLQRLTGLEREKIENEYKELMAKIAELKAILADEQLILKIISEELQQIRASY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT   E++  + A   + +I +E + + I++ G+++          +    
Sbjct: 479 GDE-----RRT---EITIGEDAIEDEDLIPREEVVITITHSGYVKRLPVSTYRSQRRGGR 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +  +  K  D ++     ++   ++  +  GK Y L A  +        G  I  LI +
Sbjct: 531 GVVGMDTKNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPELGRTARGTPIINLIQI 590

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + +        ++S   L   + +G        +     + G   + +  ++++  V
Sbjct: 591 EQGETVNAVIPIESFESGHFLFFATQQGIVKKTPLKDYNNIRKGGLIAINLREDDRLIGV 650

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
               G+ ++ +       + F    +  M R   GV+     +      +   + E  T 
Sbjct: 651 KLTDGNCNIIMGTRQGMSIHFPERDVRSMGRAATGVKGIHISEDDAVIDMDI-VDENNTV 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    + + +        +  RGG G        ++G  + 
Sbjct: 710 LIVTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSKNGPVVG 750


>gi|163748935|ref|ZP_02156186.1| DNA gyrase, A subunit [Shewanella benthica KT99]
 gi|161331311|gb|EDQ02199.1| DNA gyrase, A subunit [Shewanella benthica KT99]
          Length = 907

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/815 (31%), Positives = 405/815 (49%), Gaps = 83/815 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYTLIDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDFVPNYDGTEFIPEVMPTRIPTLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI+ P +SIE+L+EYI GPDFPT   I+  R+ I+E+Y+ GRG  
Sbjct: 182 IPPHNITEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAA-IINGRKGIIEAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R++  V+    G   I+V E+PYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 IMRSKADVQVEDNGRERIIVHELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILESLAIALANIDPIIAMIKASSTPAEAKVKLVAQGWELGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +   R+ LTE Q  AIL+LRL  L  LE  +I +E + 
Sbjct: 420 KAMLEKAGDDAARPEWLEPEYGIRDDRYYLTEQQAQAILDLRLHKLTGLEHEKILAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L+     +  +L+S ++    I  E+ E+ E F        RRT              + 
Sbjct: 480 LIEIIAALLYILHSPERLLEVIKEELNEILENFGDE-----RRTVINANEVDMSL---ED 531

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+         ++ +       A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKLAAKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S +  G  I  L+ L+  + I        Y     +++ +S 
Sbjct: 592 FSDFGKLYWLKVYQLPLASRQARGRPIVNLLPLSEGEHITAILPVRDYADDKYVIMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSI---- 675
           G                G   + +   +++  V    G   + +  +  K++ F+     
Sbjct: 652 GTVKKTALKAYSNPRANGIIAVNLKDGDQLIGVDITDGKSDIMLFSDAGKVVRFNEMVRD 711

Query: 676 DQ----------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            +                +  M R   GVR    +DG     +     +G   +      
Sbjct: 712 SETGLVKLDAETNEELVALRPMGRTATGVRGIRLEDGQKVVSLIVPKADGA-ILTITENG 770

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +           R   G +  K   R+G  + +
Sbjct: 771 YGKRTALDEYPAKSRATKGVVSIKVSERNGAVVGA 805


>gi|85705044|ref|ZP_01036144.1| DNA topoisomerase IV subunit A [Roseovarius sp. 217]
 gi|85670366|gb|EAQ25227.1| DNA topoisomerase IV subunit A [Roseovarius sp. 217]
          Length = 768

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/766 (51%), Positives = 531/766 (69%), Gaps = 27/766 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +   +  E V    LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L 
Sbjct: 6   DDPNMQPEAVSE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLS 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ A
Sbjct: 65  STGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARMT  AE +L G+ EDAVDFRD Y+    EP+V P+ FPNLLANG+SGIAVGM
Sbjct: 125 ASRYTEARMTAFAEALLDGLAEDAVDFRDNYDGTLREPIVLPASFPNLLANGSSGIAVGM 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ +A L LI +P+   E LL YI GPDFPTGG+IVE  ESI ++Y  GR
Sbjct: 185 ATNIPPHNIAELIDACLHLIKSPDARDETLLTYIPGPDFPTGGVIVEPPESIAQAYLTGR 244

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G FR+R +W +E++GRG W IVVTEIPYQVQKS+LIE+IAELI  +++P+L D+RDESA+
Sbjct: 245 GAFRLRCKWALEDLGRGQWQIVVTEIPYQVQKSKLIERIAELIQTRKVPILADVRDESAD 304

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           DVR+VL P+++++DP++LM  ++  S++E RF LNMNVL  G  P+V  L  +L+ +L  
Sbjct: 305 DVRLVLEPRSKNVDPEVLMGMMYRNSELELRFSLNMNVLIDGVTPKVCSLKEVLRAFLDF 364

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF------ 421
           R+EVL RRS+ RM+ ID R+E+L+GL++A+LN+D +I IIR +D PK  ++         
Sbjct: 365 RQEVLLRRSAHRMEKIDHRLEVLEGLIVAFLNLDRVIDIIRYDDDPKAALMREDWGRTVP 424

Query: 422 -----------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                             LT+ Q +AILN+RLRSLR+LEE ++++E D L+ E+  ++ L
Sbjct: 425 RAMSEADYVSPPPTDEPGLTDVQAEAILNMRLRSLRRLEEMELRAERDALMQERAGLEDL 484

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L     QW  +A +++EV++ F K+  +G RRT F E + + +    +AMI++EPITVV 
Sbjct: 485 LEDVSLQWAAVADQLKEVQKTFGKTHPIGARRTKFAE-AGSVEEVPLEAMIDREPITVVC 543

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           S  GWIR++  H      L FK+GD+ +   HA TTDRIL+  ++G+ YT+ A NL  GR
Sbjct: 544 SQMGWIRAMTGHLDLSRELKFKDGDAPRFMFHAETTDRILVFGSNGRFYTISASNLPGGR 603

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G GE ++L++DL +   IV   ++    KLLV S+ G+ FIV E E+IA TR GK  L +
Sbjct: 604 GMGEPLRLMVDLPNEAAIVDLLIHKPGRKLLVASTAGDGFIVPEDEVIAQTRSGKQVLNL 663

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFK 704
               +  +   VTGDHVA VG+NRK+L+FS+D++PE+ RGKGVRLQ YKDGG+SD   F 
Sbjct: 664 KDPARASVCRPVTGDHVACVGDNRKVLVFSLDELPELGRGKGVRLQKYKDGGLSDATTFN 723

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           + EGLTW D AGR   R+E++L  WLGKR G G + P+GFPR  +F
Sbjct: 724 LAEGLTWRDPAGR--TRTESNLEEWLGKRAGSGRMAPRGFPRDNRF 767


>gi|31323275|gb|AAP43927.1| DNA gyrase subunit A [Bacillus anthracis]
 gi|31323279|gb|AAP43928.1| DNA gyrase subunit A [Bacillus cereus]
          Length = 742

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/753 (32%), Positives = 415/753 (55%), Gaps = 30/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            +  +      Y +        L  RGG G   
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKT 741



 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 9/37 (24%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I E    I      Y +           RGG G    
Sbjct: 502 IPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGM 538


>gi|330829610|ref|YP_004392562.1| DNA gyrase subunit A [Aeromonas veronii B565]
 gi|328804746|gb|AEB49945.1| DNA gyrase, A subunit [Aeromonas veronii B565]
          Length = 915

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/831 (32%), Positives = 397/831 (47%), Gaps = 90/831 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM +++  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ EI    LALI+N +++I++L+ YI GPDFPTGG I+  R  IV++YR 
Sbjct: 177 GMATNIPPHNLTEIVNGCLALIENGDLTIDELMTYITGPDFPTGG-IINGRSGIVQAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRA+  VE +       I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDE
Sbjct: 236 GRGSIYVRAKAEVEVDEKTSRETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + M+T F +NM  L     P+VM L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRGESGEIVLNNLYKHTQMQTTFGINMVALD-NNQPKVMNLKEILDAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           L HRREV+ RR+ F ++    R  IL+GL +A  NID II +IR+   P           
Sbjct: 355 LLHRREVVTRRTVFELRKARDRAHILEGLAVALANIDPIIELIRHSATPADAKAGLVAKG 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL  L  LE  +I
Sbjct: 415 WELGNVAAMLEKAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHEKI 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E  +LL    ++  +L S  +    I  E+  V+E +          ++         
Sbjct: 475 LEEYQSLLDLIAELLHILASPARLMEVIRDELLAVREQYGDERRTEISMSSAEINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D ++  L A+T D IL  S
Sbjct: 535 TPEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           T GK Y L    L        G  I  L+ L   + I        YD+   +   ++ G 
Sbjct: 595 TRGKVYWLKVYQLPEASRGARGRPIINLLPLEEGERITAILPVKEYDAEKYVFFATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI------ 675
                 S+       G   + +   +++  V    G + + +  +  K++ F+       
Sbjct: 655 VKKTSLSDFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFAEGSGRAD 714

Query: 676 ----DQ----------------------------IPEMSR-GKGVRLQSYKDGGISDVIC 702
               D                             +  M R   GVR      G     + 
Sbjct: 715 ADVSDDVETDDDAGNDDDGSDNGEGTESKGTFKGVRPMGRTAAGVRGIKLGAGDKVVSLI 774

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               EG   + +    Y +           RG  G +  K   R+GK + +
Sbjct: 775 VPRGEGA-ILTATENGYGKRTALAEYPTKSRGTQGVISIKVDERNGKVIDA 824


>gi|260220859|emb|CBA28847.1| DNA gyrase subunit A [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 894

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/808 (31%), Positives = 396/808 (49%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGDQSVYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF   Y+  +SEP+V P++ PNLL NG+ GIAVGMAT+
Sbjct: 122 YTEIRLAKIAHELLADLDKETVDFGPNYDGSESEPLVMPTRIPNLLVNGSGGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+ NPE SI++L++ I  PDFPT G I+   + + + YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLLKNPEASIDELMDIIPAPDFPTAG-IIYGIQGVKDGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   E++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRARCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L     P++  L  +++ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALV-NGQPKLCNLKDLIEVFLNHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------------ 411
           EV+ RR+ F ++    R  +L+GL +A  NID+ I IIR                     
Sbjct: 360 EVVTRRTVFNLRKARERGHVLEGLAVALANIDDFIRIIRESPTPPVAKTELMNRPWDSKL 419

Query: 412 ---------------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                      +        + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRADGGVVNADDYRPEGLEKEFGMGNDGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  +++AE E +  +L    +    I  E+  VK+ F ++    RR         
Sbjct: 480 DKIVAEYKDVMAEIEDLLDILAKPARVAVIIGEELGHVKQEFGQTKIGARRSLVE----H 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALH 556
           +      + +I    + V +S+ G+I+S   H             A   KE D +     
Sbjct: 536 SSFDLSTEDLITPTDMVVTMSHSGYIKSQPLHEYRAQKRGGRGKQATATKEDDWVDQLFV 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF-------V 607
           A+T D IL  S  G+ Y L    +        G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRT 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADQYVFMSTSMGTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  M R  +GVR     +G     +     E  + + +    Y +  N 
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMMLDEGQSVIAMLVAEDEQQSVLTATENGYGKRTNI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RG  G +  +   R+GK +++
Sbjct: 776 TEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 80/255 (31%), Gaps = 16/255 (6%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G + T 
Sbjct: 595 VANTHDYILCFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMF---------PLQEGEKITV 645

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++   +       +        +               + A+   EGD L  A    
Sbjct: 646 VLALTGEKRTFPADQYVFMSTSMGTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTD 705

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVV 617
               ++L S  GKA      ++     +   ++ ++ L+  Q ++   V +   + +L  
Sbjct: 706 GKHDVMLFSDGGKAVRFDENDVRPMGRNARGVRGMM-LDEGQSVIAMLVAEDEQQSVLTA 764

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIF 673
           +  G       +E   + R  K  + +   E+   VV  T     D + ++ +   L+  
Sbjct: 765 TENGYGKRTNITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEIMLITDKGVLVRT 824

Query: 674 SIDQIPEMSRG-KGV 687
            + +I EM R  +GV
Sbjct: 825 RVSEIREMGRATQGV 839


>gi|329312729|gb|AEB87142.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus T0131]
          Length = 886

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/762 (32%), Positives = 403/762 (52%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+  QGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDDQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +        +  RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +         
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 7/116 (6%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 693 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             + +      + + +V     ++   +  I +  R  +GVRL    D      + 
Sbjct: 753 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 808



 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 708 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV
Sbjct: 768 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKV 810


>gi|313900989|ref|ZP_07834479.1| DNA gyrase, A subunit [Clostridium sp. HGF2]
 gi|312954409|gb|EFR36087.1| DNA gyrase, A subunit [Clostridium sp. HGF2]
          Length = 837

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/761 (34%), Positives = 416/761 (54%), Gaps = 31/761 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +E +  V +   ++  +L Y++S I +RA+PD+RDG KPVHRRI+HAM+E+G+    
Sbjct: 2   DLNKEKLIQVDISKEMKTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  PFKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +++ +++D VDF   Y+ E++EP V P++FPNLL NG+ GIAVGMAT+
Sbjct: 122 YTEARMSKIAMEMMKDINKDTVDFIPNYDNEETEPAVLPARFPNLLVNGSVGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ E  +A  A++DNPEIS+ + +  YI GPDFPTGGII+  R  I +++  GRG 
Sbjct: 182 IPPHNLTETIDATFAIMDNPEISVVELMDNYIKGPDFPTGGIIL-GRAGIRQAFETGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VR++  +E++G G   IVVTEIPYQV K+ LI KIA+L+  K+I  +  + DES  + 
Sbjct: 241 IMVRSKHHLEDMGNGKTRIVVTEIPYQVNKANLITKIADLVREKQIEGITYLNDESNREG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +   PD+++  ++ ++ ++T F +NM  L   + P+ M +   L+ ++ H+ 
Sbjct: 301 IRIVIELRKDAQPDVILNQLYRMTQLQTSFGVNMLALV-EKTPKQMGIREALQHYVNHQI 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
           +V  RR+ F ++  + R  IL+GL IA  +IDEII +IR+           + +F LTE 
Sbjct: 360 DVTVRRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARTGLMEQFKLTEI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL +RLR L  LE  +I++E   L+     +  +L +  +    I  E+ EVK  F
Sbjct: 420 QANAILEMRLRRLTGLERDKIENEYRELMNTIADLRDILANHDRVLGIIRDELTEVKNRF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT   E   AD     + +I  E + + ++  G+I+ + + +         
Sbjct: 480 GDE-----RRTEISE---ADYDMQDEDLIPVEDVVITMTTNGYIKRMPTDTYRTQNRGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  +   E D + + +   T D ++L +  GK Y +    + +     +   +  L++L
Sbjct: 532 GVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSGRTAKGLPVVNLLNL 591

Query: 597 NHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  + +              LL V+  G       SE  +  + GK  + +   +++  V
Sbjct: 592 DKEEKVRALVPVRPDSESSFLLFVTKNGLVKRTPMSEFDSIRQNGKIAITLREFDELVGV 651

Query: 654 VKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            + TGD  + + G N K + F  D I  M R   GV+  +    G   V      EG   
Sbjct: 652 KETTGDDEIIIAGSNGKAVRFHEDDIRAMGRTASGVKGFNV--DGSIVVGAATSKEGTHL 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +   Y +        L  RG  G        ++G+ +S
Sbjct: 710 LAVSENGYGKRTAIEEYRLTTRGAKGVKTINVTNKTGELVS 750



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/486 (13%), Positives = 141/486 (29%), Gaps = 24/486 (4%)

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +      G  + A         G    +   + +Q+  +    K        R  +LE
Sbjct: 322 RMTQLQTSFGVNMLALVEKTPKQMGIREALQHYVNHQIDVTVRRTKFELKKAEDRAHILE 381

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESI--FMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +R        I+   ++   D +     +  F L++++    L M +  +  + +    
Sbjct: 382 GLRIALDHIDEIIHLIRSSQNDAEARTGLMEQFKLTEIQANAILEMRLRRLTGLERDKIE 441

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
           +   +             +  R+  I R                EI     +      + 
Sbjct: 442 NEYRELMNTIADLRDILANHDRVLGIIRDELTEVKNRFGDERRTEISEADYDMQDEDLIP 501

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           V    +T      I  +   + R         +  ++  +      +  S    +  +  
Sbjct: 502 VEDVVITMTTNGYIKRMPTDTYRTQNRGGRGVKGMSVNEDDIVDLLITMS-THDYLMLFT 560

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT--------VVISNRGW 529
            + +V  I         R      V        ++ +    P+         + ++  G 
Sbjct: 561 NLGKVYRIKGYKVPNSGRTAKGLPVVNLLNLDKEEKVRALVPVRPDSESSFLLFVTKNGL 620

Query: 530 IRSLKSHSVDLSALHF------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           ++       D    +       +E D L         D I++  ++GKA      ++ + 
Sbjct: 621 VKRTPMSEFDSIRQNGKIAITLREFDELVGVKETTGDDEIIIAGSNGKAVRFHEDDIRAM 680

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTF 641
                 ++          +V A        LL VS  G        E    TR  KG   
Sbjct: 681 GRTASGVKGFNVDGSI--VVGAATSKEGTHLLAVSENGYGKRTAIEEYRLTTRGAKGVKT 738

Query: 642 LKV-SSEEKMKLVVKVTGDHV-AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
           + V +   ++  V  V GD    +V  +  ++  S+D I   SR  +GV+L +  D    
Sbjct: 739 INVTNKTGELVSVRAVNGDEDAMIVTNSGIIIRISVDDIGIYSRNTQGVKLINVADEESV 798

Query: 699 DVICFK 704
             +   
Sbjct: 799 AKVAIV 804


>gi|217420486|ref|ZP_03451991.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576]
 gi|237813301|ref|YP_002897752.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346]
 gi|254195657|ref|ZP_04902084.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13]
 gi|169652403|gb|EDS85096.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13]
 gi|217395898|gb|EEC35915.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576]
 gi|237503052|gb|ACQ95370.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346]
          Length = 888

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/789 (30%), Positives = 379/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 32  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 91

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 92  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 151

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 152 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 211

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 212 VVDACLYLLNNPQASVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 270

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 271 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 330

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 331 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-NQPKLLNLREILQCFLSHRREVLTRRTV 389

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------------- 409
           + ++    R  +L+GL +A  NIDE IAII+                             
Sbjct: 390 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRA 449

Query: 410 ------------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 450 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 509

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F  +             +        
Sbjct: 510 RDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQD 569

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 570 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 629

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + ++ G     
Sbjct: 630 VYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTTALGTVKKT 689

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  +  K + F  + +  M R  
Sbjct: 690 PLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREA 749

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR     D      +     E  + + +    Y +           RG  G +  +  
Sbjct: 750 RGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 809

Query: 745 PRSGKFLSS 753
            R+G+ +++
Sbjct: 810 ERNGRVVAA 818



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 700 KGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDD 759

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 760 AQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 819

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 820 LVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 862


>gi|320120272|gb|EFE27931.2| DNA gyrase, A subunit [Filifactor alocis ATCC 35896]
          Length = 812

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/761 (33%), Positives = 418/761 (54%), Gaps = 28/761 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S   + + +  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M +  L  
Sbjct: 2   SQEEMRDKIIEVDLKHEMEQSYIEYAMSVIVGRALPDVRDGLKPVHRRILYSMGQNNLTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KSA IVG+V+GK HPHGD +VYD+LV++AQ F  RYPL+ G GNFG+IDGDSAAA
Sbjct: 62  DKPYRKSATIVGDVLGKYHPHGDTAVYDALVKMAQDFSMRYPLVDGHGNFGSIDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+RM +++  +L+ ++++ VD    Y+E + EP V P+++PNLL NG++GIAVGMA
Sbjct: 122 MRYTESRMEKLSMEMLRDLNKETVDMVPNYDENEWEPSVLPARYPNLLVNGSNGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HN+ E+ +A + LIDN + ++E +L++I GPDFPTG  I     S++++YR GRG
Sbjct: 182 TSIPPHNLGEVIDAVVELIDNEDATLEDILKHIKGPDFPTGAHI-MGNSSMLQAYRTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
               RA+   EE+  G   IVVTEIPYQV K+RL+EKIAEL+  KRI  +  I DES   
Sbjct: 241 KVVQRAKTSFEEMSGGKTRIVVTEIPYQVNKARLVEKIAELMKDKRIDGITHIGDESNRK 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R ++PD+++  +F  S ++  F + M  L    +P+V+ L+ +L+ +L H+
Sbjct: 301 GMRIVIELRRDVNPDIVLNQLFKFSPLQQVFSIIMLALV-NNIPKVLTLEQMLRLYLKHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-KPKPVMVSRFSLTENQ 427
            EV+ RR+ F ++    R+ +++GLL A  +IDE+IAIIR+        ++ RF  +E Q
Sbjct: 360 EEVVTRRTQFDLKKAQDRIHLVEGLLKAIDHIDEVIAIIRSSYSDAMERLMERFDFSEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L+ LE+ +++ E  +L  + +    +L+      + I  EI E+K  + 
Sbjct: 420 AKAILDMQLRRLQGLEKEKLEDEQKDLQQKIDYYQEILSDRSLLLSIIKEEILEIKAKYG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRTTF     + +    + MI  + +TV +++ G+I+          K     
Sbjct: 480 NE-----RRTTFL---ASYEDIDIKDMIPDDEVTVTLTHLGYIKRVGIDTYKTQKRGGKG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLN 597
           ++++  ++ D +   L      +++  +  G+ Y L    +       +      ++ L 
Sbjct: 532 IASMSTRDEDFVDKLLLTSNHSKVIFFTNMGRIYRLNTYEIPESSRTAKGTNIVNILPLE 591

Query: 598 HNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             + + T             +++ + KG        E   + R G   + +  ++++  V
Sbjct: 592 DGEKVNTMLSIREEQASSGFVVMCTRKGIMKKTPLEEFQRSNRNGLIAISLKEDDELIGV 651

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
               G+ ++  V  N K ++F    I  M R  +GVR  + ++G     +     E    
Sbjct: 652 ELTDGNCNIICVARNGKAIMFDESDIRSMGRTAQGVRAMNLEEGDEIVSMMIADPEKD-V 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  + R Y +        L  RGG GS   K   ++G+ + 
Sbjct: 711 LIISERGYGKRTPIAEYNLQTRGGKGSRTYKITEKTGRLVG 751



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/427 (12%), Positives = 128/427 (29%), Gaps = 22/427 (5%)

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL--LMESIFMLSDMETRFPLNMNVLSMG 349
             RI L+E +         ++   ++   D     +    F     +    + +  L   
Sbjct: 375 QDRIHLVEGLLKAIDHIDEVIAIIRSSYSDAMERLMERFDFSEIQAKAILDMQLRRLQGL 434

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
              ++      L++ + + +E+L  RS       +  +EI                   +
Sbjct: 435 EKEKLEDEQKDLQQKIDYYQEILSDRSLLLSIIKEEILEIKAKYGNERRTTFLASYEDID 494

Query: 410 EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                P      +LT       + +      +    +  + +     +      L ++  
Sbjct: 495 IKDMIPDDEVTVTLTHLGYIKRVGIDTYK-TQKRGGKGIASMSTRDEDFVDKLLLTSNHS 553

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFC-------EVSRADKATLQQAMIEKEPITV 522
           +               +         + T         +  + +     +         V
Sbjct: 554 KVIFFTNMGRIYRLNTYEIPESSRTAKGTNIVNILPLEDGEKVNTMLSIREEQASSGFVV 613

Query: 523 VISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           + + +G ++              L A+  KE D L           I+ ++ +GKA    
Sbjct: 614 MCTRKGIMKKTPLEEFQRSNRNGLIAISLKEDDELIGVELTDGNCNIICVARNGKAIMFD 673

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             ++ S     + ++  ++L    +IV+  + D    +L++S +G       +E    TR
Sbjct: 674 ESDIRSMGRTAQGVR-AMNLEEGDEIVSMMIADPEKDVLIISERGYGKRTPIAEYNLQTR 732

Query: 637 KGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
            GK      +   +   +   V    D + +V  +  L+   +  I  +SR   GVRL  
Sbjct: 733 GGKGSRTYKITEKTGRLVGGKVVSNDDEIMIVNIDGTLIRMEVKGISVLSRVTSGVRLMK 792

Query: 692 YKDGGIS 698
             +    
Sbjct: 793 TAENQDI 799


>gi|121598728|ref|YP_993880.1| DNA gyrase subunit A [Burkholderia mallei SAVP1]
 gi|238561686|ref|ZP_04609705.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4]
 gi|251766982|ref|ZP_04819906.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20]
 gi|254203931|ref|ZP_04910291.1| DNA gyrase, A subunit [Burkholderia mallei FMH]
 gi|254208911|ref|ZP_04915259.1| DNA gyrase, A subunit [Burkholderia mallei JHU]
 gi|121227538|gb|ABM50056.1| DNA gyrase, A subunit [Burkholderia mallei SAVP1]
 gi|147745443|gb|EDK52523.1| DNA gyrase, A subunit [Burkholderia mallei FMH]
 gi|147750787|gb|EDK57856.1| DNA gyrase, A subunit [Burkholderia mallei JHU]
 gi|238524138|gb|EEP87573.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4]
 gi|243064219|gb|EES46405.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20]
          Length = 888

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/789 (30%), Positives = 379/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 32  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 91

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 92  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 151

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 152 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 211

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 212 VVDACLYLLNNPQASVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 270

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 271 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 330

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 331 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-NQPKLLNLREILQCFLSHRREVLTRRTV 389

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------------- 409
           + ++    R  +L+GL +A  NIDE IAII+                             
Sbjct: 390 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRA 449

Query: 410 ------------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 450 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 509

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F  +             +        
Sbjct: 510 RDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQD 569

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 570 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 629

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + ++ G     
Sbjct: 630 VYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFSADKYVFMTTALGTVKKT 689

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  +  K + F  + +  M R  
Sbjct: 690 PLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREA 749

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR     D      +     E  + + +    Y +           RG  G +  +  
Sbjct: 750 RGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 809

Query: 745 PRSGKFLSS 753
            R+G+ +++
Sbjct: 810 ERNGRVVAA 818



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 700 KGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDD 759

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 760 AQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 819

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 820 LVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 862


>gi|293609890|ref|ZP_06692192.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024]
 gi|292828342|gb|EFF86705.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024]
          Length = 904

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/827 (30%), Positives = 408/827 (49%), Gaps = 95/827 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  DNP ISIE L+EYI GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++  
Sbjct: 240 IRGKYHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F+ + +E  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVVVNNLFLNTQLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ F ++    R  IL+GL +A  NIDEII  I+    P                 
Sbjct: 359 VVTRRTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGV 418

Query: 420 -------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV AIL LRL  L  LE+ ++ 
Sbjct: 419 VSLLEKAGAISVRPDEIEGEDPNRPFGLTDSIYRLSPTQVGAILELRLHRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN        I  E+  V + +        RRT   E   +   
Sbjct: 479 AEYTEILGQIAELTAILNDFNLLMAVIREELALVLQQYGD-----GRRTEIIE---SRID 530

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+         ++ +      SA   K+ D ++  + A   
Sbjct: 531 FSREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             +L  +  GK Y L    +       +   I  L+ L+ N+ +        +     + 
Sbjct: 591 ATVLCFTNVGKVYRLRVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLNEFPENHYVF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + ++ G    V+  +       G   ++++ E+ +  V    G+  + +     K + F+
Sbjct: 651 MATASGTVKRVDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFA 710

Query: 675 IDQIPEMSR-GKGVRLQS-------YKDGGISD--------------------VICFKIC 706
              +  M R  KGVR            +                         V    + 
Sbjct: 711 ETDVRAMGRTAKGVRGMRVSFASSTLSEEDAEVENDESDDNDDSADSNLVSRIVSLVVVP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 771 ETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT 657
            IV+  V   T ++L  S+ G       ++     R GK  + + + E   ++   V + 
Sbjct: 762 RIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSID 821

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFK 704
               + ++ +   L+     ++    R  +GVRL    ++  +  V+  +
Sbjct: 822 ETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871


>gi|28189081|dbj|BAC56228.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   L+DNP+++  +++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIGGMTAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F  + M+T F     +     VP+++ +  IL+ ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKQTQMQTNFSF-NMLAIQNGVPKILSVRQILESYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ RF L+E Q 
Sbjct: 359 VTRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMERFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELVALIADLTDILAKPERVVLIIKEELEEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTEL--MVGEVLSLEDEDLIEEADVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L  
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           N+ I T         +   L   + +G       +E     + G   L +  ++++  V 
Sbjct: 592 NESIQTIINVTKDQTADHYLFFATRQGIVKRTNVNEFSNIRQNGLKALNLKDDDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  M R   GVR    ++G         + +    +
Sbjct: 652 LTDGQADVIMGTKFGYSVRFAETDVRNMGRTATGVRGIKLREGDHLVGATI-VSDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   Y +           RGG G +  K   ++G    
Sbjct: 711 VLSENGYGKRTPASEYPTKGRGGKGIITLKVADKNGPLAG 750



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 70/221 (31%), Gaps = 12/221 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E                +      + +G ++    +         L AL+ K+ D L 
Sbjct: 589 LEENESIQTIINVTKDQTADHYLFFATRQGIVKRTNVNEFSNIRQNGLKALNLKDDDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +      ++ +       ++  I L     +V A +     
Sbjct: 649 NVFLTDGQADVIMGTKFGYSVRFAETDVRNMGRTATGVRG-IKLREGDHLVGATIVSDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV+S  G       SE     R GK  + +   +K   +  +  V GD  + V+ +  
Sbjct: 708 EVLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKNGPLAGLTTVQGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            ++  SI  I +  R   GV++    +              
Sbjct: 768 VIIRTSIANISQTGRSTMGVKVMRLDEEAKIMTFALVDAAD 808


>gi|332284745|ref|YP_004416656.1| DNA gyrase subunit A [Pusillimonas sp. T7-7]
 gi|330428698|gb|AEC20032.1| DNA gyrase subunit A [Pusillimonas sp. T7-7]
          Length = 864

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/785 (31%), Positives = 385/785 (49%), Gaps = 59/785 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE R+ ++A  +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRLAKIAHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ E  L 
Sbjct: 121 DIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLAEVIEGCLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV-GRG 264
            + NP+ SIE+L+E I  PDFPTGG I+     + E YR GRG   +RA+   E++    
Sbjct: 181 CLRNPDCSIEELIELIPAPDFPTGG-IIYGMSGVREGYRTGRGRVIMRAKTHFEDMEKGN 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V  +PYQV K  L EKIA+L+  KRI  + DIRDES +D   ++    R   P++
Sbjct: 240 RQAIIVDALPYQVNKKTLQEKIADLVNDKRIEGISDIRDESDKDGMRLVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  I++ +L HRREV+ RR+ F+++   
Sbjct: 300 ILNNLYKNTQLQDTFGMNMVALVD-GQPRLLNLKQIVEYFLFHRREVVTRRTVFQLRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------------------- 415
            R  +L+GL +A  NID+ I II+    P                               
Sbjct: 359 ERGHVLEGLAVALANIDDFITIIKAAPTPPVARQELMARSWDSSLVREMLVRADDGVTPG 418

Query: 416 ----------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                + L+E Q   ILN+RL+ L  LE+ +I  E  +++    
Sbjct: 419 GRAAYRPEGLPQVFGLQDDGLYRLSEVQAQEILNMRLQRLTGLEQDKIVGEYKDIMTTIA 478

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF---CEVSRADKATLQQAMIE 516
            +  +L   ++    I+ E+  +K  FS S    RR        E+   D  T    ++ 
Sbjct: 479 DLLDILARPERITAIISDELLAIKAEFSTSAKDTRRSEIEHNATELDTEDLITPMDMVVT 538

Query: 517 KEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                 + S         K       A   KE D +     A+T D +L  S  G+ Y L
Sbjct: 539 LSQTGYIKSQPLSEYRAQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSDRGRVYWL 598

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               +        G  I  +  L  ++ I        +     + + +S+G       S+
Sbjct: 599 KVWEVPQGSRNSRGRPIVNMFPLVDDEKITVVLPVKEFSEDHYVFMATSRGTVKKTPLSD 658

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                + G   + +   + +       G   V +  ++ K + F  + +  M R  +GVR
Sbjct: 659 FSNPRKAGIIAVALDDNDFLIGADLTDGAHDVMLFSDSGKAVRFDENDVRPMGRTARGVR 718

Query: 689 LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               ++G +   +     E  + + +    + +  + +      RG  G +  +   R+G
Sbjct: 719 GMMLEEGQVVIAMLVAGDETQSVLTATENGFGKRTSIVEYTRHGRGTKGMIAIQTSARNG 778

Query: 749 KFLSS 753
           K + +
Sbjct: 779 KVVGA 783



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 9/162 (5%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             ++L S  GKA      ++         ++ ++       I      D T  +L  +  
Sbjct: 688 HDVMLFSDSGKAVRFDENDVRPMGRTARGVRGMMLEEGQVVIAMLVAGDETQSVLTATEN 747

Query: 621 GNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G        E   + R  K  + +     + + +  V+    D + ++     L+   + 
Sbjct: 748 GFGKRTSIVEYTRHGRGTKGMIAIQTSARNGKVVGAVLVRPSDEIMLITTGGVLVRTRVS 807

Query: 677 QIPEMSRG-KGVRLQSYKDG----GISDVICFKICEGLTWID 713
           +I EM R  +GV L S  D     G+  V+     + +  + 
Sbjct: 808 EIREMGRATQGVTLISVDDNSMLSGVRRVVESDADDDVEVLI 849


>gi|237716513|ref|ZP_04546994.1| subunit A [Bacteroides sp. D1]
 gi|262408111|ref|ZP_06084659.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22]
 gi|294645224|ref|ZP_06722942.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a]
 gi|294806091|ref|ZP_06764945.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b]
 gi|298484187|ref|ZP_07002353.1| DNA gyrase, A subunit [Bacteroides sp. D22]
 gi|229444160|gb|EEO49951.1| subunit A [Bacteroides sp. D1]
 gi|262354919|gb|EEZ04011.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22]
 gi|292639435|gb|EFF57735.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a]
 gi|294446708|gb|EFG15321.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b]
 gi|298269691|gb|EFI11286.1| DNA gyrase, A subunit [Bacteroides sp. D22]
          Length = 858

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/758 (31%), Positives = 397/758 (52%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+E++  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PPHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGG-FIYGVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D   
Sbjct: 241 MRAKAEI-ESGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALVH-GRPKTLNLRDLIKYFIEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRQVMKDELLEVKTKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ + ++    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDNVTAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  + KG        +     + G   + +  ++ +  V    G
Sbjct: 599 RVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  + + 
Sbjct: 659 NNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKDLETESVMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +           RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLV 756


>gi|167816867|ref|ZP_02448547.1| DNA gyrase subunit A [Burkholderia pseudomallei 91]
          Length = 866

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/789 (30%), Positives = 379/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACLYLLNNPQASVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-NQPKLLNLREILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------------- 409
           + ++    R  +L+GL +A  NID+ IAII+                             
Sbjct: 368 YELRKARERGHVLEGLAVALANIDKFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRA 427

Query: 410 ------------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F  +             +        
Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + ++ G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTTALGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  +  K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR     D      +     E  + + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+G+ +++
Sbjct: 788 ERNGRVVAA 796



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDD 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 738 AQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|88705960|ref|ZP_01103668.1| DNA gyrase, subunit A [Congregibacter litoralis KT71]
 gi|88699674|gb|EAQ96785.1| DNA gyrase, subunit A [Congregibacter litoralis KT71]
          Length = 885

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/783 (31%), Positives = 395/783 (50%), Gaps = 49/783 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKS
Sbjct: 7   EISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A ++L  +D+D VD+ D Y+  +  P V P++ PNLL NG++GIAVGMAT+IP HN
Sbjct: 127 MSKIAHMLLSDLDKDTVDYVDNYDGTERIPAVLPTRVPNLLVNGSAGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  A LALI +  ISI+ L+ Y+ GPDFPTG  I+  R  IV++YR GRG   VRAR
Sbjct: 187 LREVVNACLALIGDAHISIDDLMRYLPGPDFPTGA-IINGRAGIVQAYRTGRGRIYVRAR 245

Query: 256 WC-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              + +   G   I+V EIPYQ+ K+RLIE+IAEL+  K++  + ++RDES +D   V+ 
Sbjct: 246 AEVITDEKTGRDTIIVHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +    D+++ +++  + ++  F +NM  L     P+V+ L  IL+ +L HRREV+ R
Sbjct: 306 ELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVD-GQPRVLNLKEILEAFLRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  +L+GL IA  NID++I +++    P                     
Sbjct: 365 RTLFLLRKARERGHVLEGLAIALANIDKVIELVKASPSPAEARESLLAERWLPGEVTSML 424

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+  Q  AIL+LRL  L  LE  ++  E  + LAE
Sbjct: 425 ERAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKLAE 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L   ++    I  E+ E+   F        R +     +        + +   
Sbjct: 485 IADLLDILQDRERLLAVIREELEEIATEFGDERRTEIRDSQEDLTAEDLITPEDRVVTLS 544

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
                        +  +   +  +AL  K+ D ++  L A+T D +L  +  GK Y +  
Sbjct: 545 HGGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFTNLGKVYWIKV 604

Query: 578 GNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEII 632
             +        G  +  L+ L+  + + +    +       + + +++G     + +   
Sbjct: 605 YQIPVAGRSSRGRPMVNLLQLDEGERVTSILPLEEHSDDRFIFMATAQGYVKKTDLASF- 663

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQ 690
           A    G   + +  ++ +       G+  V +     K   FS   +  M R  +GVR  
Sbjct: 664 APRSAGLRAIVLGEDDVLVGTAITDGNQDVMLFSSEGKATRFSESAVRAMGRASRGVRGI 723

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  DG     +      G T +  +   Y +           RGG G +      R+G+ 
Sbjct: 724 NLADGHRMISLLVPDARG-TVLTVSENGYGKRTTVDDFPTKGRGGKGVIAMASSERNGRL 782

Query: 751 LSS 753
           + +
Sbjct: 783 VGA 785



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 91/253 (35%), Gaps = 20/253 (7%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH- 536
            I+  +   +  +  GR      ++   ++ T    + E      +          K+  
Sbjct: 601 WIKVYQIPVAGRSSRGRPMVNLLQLDEGERVTSILPLEEHSDDRFIFMATAQGYVKKTDL 660

Query: 537 ------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                 S  L A+   E D L           ++L S++GKA       + +       +
Sbjct: 661 ASFAPRSAGLRAIVLGEDDVLVGTAITDGNQDVMLFSSEGKATRFSESAVRAMGRASRGV 720

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
           +  I+L     +++  V D+   +L VS  G        +     R GK  + ++S E+ 
Sbjct: 721 RG-INLADGHRMISLLVPDARGTVLTVSENGYGKRTTVDDFPTKGRGGKGVIAMASSERN 779

Query: 650 --MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
             +   ++V +GD + ++     L+    DQ+ ++ R  +GVR+   K+G     +    
Sbjct: 780 GRLVGALQVFSGDELMLISNQGTLVRTQCDQVSQLGRNTQGVRIIRTKEGETLVRV---- 835

Query: 706 CEGLTWIDSAGRS 718
                 +DS    
Sbjct: 836 ---ERIVDSGEEG 845


>gi|254181083|ref|ZP_04887681.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655]
 gi|184211622|gb|EDU08665.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655]
          Length = 866

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/789 (30%), Positives = 379/789 (48%), Gaps = 56/789 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT G I+     + + YR GRG   +RA    
Sbjct: 190 VVDACLYLLNNPQASVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVD-NQPKLLNLREILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------------- 409
           + ++    R  +L+GL +A  NIDE IAII+                             
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLMRA 427

Query: 410 ------------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F  +             +        
Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQD 547

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V        R+ K       A   KE D ++    A+T D IL  S  G+
Sbjct: 548 MVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGR 607

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  +  L   + I        + +   + + ++ G     
Sbjct: 608 VYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFSADKYVFMTTALGTVKKT 667

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                    +KG   + +   + +       G   V +  +  K + F  + +  M R  
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREA 727

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR     D      +     E  + + +    Y +           RG  G +  +  
Sbjct: 728 RGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTS 787

Query: 745 PRSGKFLSS 753
            R+G+ +++
Sbjct: 788 ERNGRVVAA 796



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 678 KGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDD 737

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 738 AQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 797

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 798 LVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 840


>gi|307730628|ref|YP_003907852.1| DNA gyrase subunit A [Burkholderia sp. CCGE1003]
 gi|307585163|gb|ADN58561.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1003]
          Length = 862

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/782 (30%), Positives = 379/782 (48%), Gaps = 56/782 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NP+ SI++L+E +  PDFPT G I+     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLKNPDASIDELIEIVPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  +L  +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------------------ 414
            R  +L+GL +A  NIDE IAII+    P                               
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETENASA 418

Query: 415 ----------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGREAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  +K  F  +             +       +  +    
Sbjct: 479 ADLLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ K       A   KE D +     A+T D IL  S  G+ Y +   
Sbjct: 539 AGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVY 598

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G  I  +  L   + I        + +   + + ++ G            
Sbjct: 599 EVPQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSADKFVFMATALGTVKKTPLEAFSR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             RKG   + +   + +       G H V +  ++ K + F  + +  M R  +GVR   
Sbjct: 659 PLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQ 718

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +DG     +     E  + + +    + +           RG  G +  +   R+GK +
Sbjct: 719 LEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVV 778

Query: 752 SS 753
           ++
Sbjct: 779 AA 780



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 662 KGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 721

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
               I      D    +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 722 GQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 781

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V  +  + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 782 LVDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEG 824


>gi|238018253|ref|ZP_04598679.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748]
 gi|237864724|gb|EEP66014.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748]
          Length = 823

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/760 (33%), Positives = 396/760 (52%), Gaps = 16/760 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++       N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G
Sbjct: 1   MADQQ-WSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDS
Sbjct: 60  MTPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDS 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++ + +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAV
Sbjct: 120 AAAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+C     LIDNP++++E+L+  I GPDFPTG  ++  RE I ++Y  
Sbjct: 180 GMATNIPPHNLNEVCNGLTMLIDNPDVTVEELMTQIKGPDFPTGA-LILGREGIKKAYST 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RAR  +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES
Sbjct: 239 GRGSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++      + PD+++  ++  + ++  F + M  L     P+V+ L  +L  +L
Sbjct: 299 DRQGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVD-GHPRVLNLKEVLGYYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR +V+ RR+ F +   + R  IL+GLLIA  +IDE+IA IR+       +  ++ +F 
Sbjct: 358 DHRLDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RLR L  LE  +I+ E   LLA  E + ++L S  +Q   I  E+ ++
Sbjct: 418 LSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKEELEDM 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ +           T         A  +  +   +   +   N    R+       +  
Sbjct: 478 KKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIG 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---GRGHGEAIQLLIDLNHN 599
           +  KE D +   +H  T + +L  ++ G+ Y L A  +         G A+  ++ L   
Sbjct: 538 MKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVG 597

Query: 600 QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + + T    +       L +V+  G        E     R G   + +   +++  V   
Sbjct: 598 ESVTTMIDLERIHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDRLISVSVT 657

Query: 657 TGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT--WI 712
           TG+   ++  +    + FS   +  M R   GVR      G +         +       
Sbjct: 658 TGNQDILIGTKLGIAIRFSESDVRLMKRAAHGVRGIKLNTGDVVVGAGVLNADESEAQVF 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   + +  +     L KRGG GS   K   ++G  ++
Sbjct: 718 TISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVA 757



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVV 664
           +S  ++  +S +G     +        R GK      +   + + + + V    D V ++
Sbjct: 711 ESEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVAVEVVHNDDEVMLI 770

Query: 665 GENRKLLIFSIDQIPE-MSRG-KGVRLQSYKDGGISDVICFKICEGLT 710
            E  K++ F+++ I     +   GV+ Q+  +G     I       + 
Sbjct: 771 SEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIE 818


>gi|217978281|ref|YP_002362428.1| DNA topoisomerase IV subunit A [Methylocella silvestris BL2]
 gi|217503657|gb|ACK51066.1| DNA topoisomerase IV, A subunit [Methylocella silvestris BL2]
          Length = 750

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/750 (55%), Positives = 544/750 (72%), Gaps = 1/750 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   +S          + V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ 
Sbjct: 1   MGK-TVSPPAPPSSGGTEPVNLREALEERYLAYALSTIMGRALPDARDGLKPVHRRILYG 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + LD G AFKK A+IVG+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 60  MQILRLDPGTAFKKCAKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGN 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAAYRYTEARMT VA L+L+G+DED+VDFRD Y+ +  EPVV PS  PNLLANG 
Sbjct: 120 IDGDGAAAYRYTEARMTDVARLLLEGIDEDSVDFRDNYSGDQQEPVVLPSALPNLLANGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMATSIP HN+ E+C+AAL L+ + + S ++LL +  GPDFPTGG++VES++SI 
Sbjct: 180 QGIAVGMATSIPPHNLAELCDAALYLLSHSDASTDQLLSFAPGPDFPTGGVLVESKQSIA 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  R+RARW  EE  RG+W IVVTEIPY VQKSRLIEKIAEL+  K++PL+ D
Sbjct: 240 ETYRTGRGSLRLRARWSKEEAARGAWTIVVTEIPYMVQKSRLIEKIAELLNDKKLPLVAD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAEDVR+V+ PK+R++DP LLME +F L+++ETRFP+N+NVL  G  P+V+     
Sbjct: 300 IRDESAEDVRVVIEPKSRTVDPALLMEHLFRLTELETRFPVNLNVLVDGVAPRVVSFKEA 359

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L++WL HRREVL RR+  R+  I RR+E+L G+LI +LN+DE+I IIR ED+PK  +   
Sbjct: 360 LQQWLDHRREVLVRRARHRLAEIVRRLELLAGMLIVFLNLDEVIRIIREEDEPKERLQLA 419

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSL++ QV+ +L+ RLRSLR+LEE QI+ E + L  EK ++++LL    +QW +IA EIR
Sbjct: 420 FSLSDMQVNYVLDTRLRSLRRLEEMQIQREHEALEKEKLELEALLADEARQWKKIAAEIR 479

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           ++K+ +   T LGRRRT+F E     +     AM+E+EP+TVV+S +GWIR+LK    DL
Sbjct: 480 DLKKKYGPETKLGRRRTSFAEAPDVGEIDFASAMVEREPVTVVVSEKGWIRALKGQVADL 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S L FK  DSL I+  A TT +IL+LS DGK +TL AG L  GR  GE ++LL D+   +
Sbjct: 540 SGLQFKGDDSLHISFFAETTSKILVLSGDGKIFTLDAGKLPGGRSQGEPLRLLADIGEGE 599

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            +   F Y    K+LV +  G  F+V + E+I  TRKGK  L V      K++V   GDH
Sbjct: 600 SVAAVFPYAPGQKMLVATDDGRGFVVSQDEMIGGTRKGKLLLNVEKPGIAKIIVPADGDH 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VA++GENRKLL+F +DQ+PEM+RGKGVRLQ Y+DGG++D   F I EGL+W DSAGR + 
Sbjct: 660 VAIIGENRKLLVFPLDQVPEMARGKGVRLQKYRDGGVADAKVFSIVEGLSWKDSAGRVFV 719

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            ++ +L  W+G R   G L P+GFP++ +F
Sbjct: 720 VAKPELAEWIGNRAEAGRLPPRGFPKNNRF 749


>gi|171463936|ref|YP_001798049.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193474|gb|ACB44435.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 902

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/809 (30%), Positives = 393/809 (48%), Gaps = 76/809 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLRK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATNIPPHNLDE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A L ++ NPE +I++L+E I  PDFPT G I+   + + E YR GRG   +RA+   
Sbjct: 190 VVTACLHVLHNPECTIDELIEIIPAPDFPTAG-IIYGVQRVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    I+V E+PYQV K  L+E+IAEL+  K++  + D+RDES +    V+    
Sbjct: 249 EDLDKGTRQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDNFGMNMVALVD-NQPRLLNLKQMLEYFLQHRREVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410
           F ++    R   L+GL +A  NIDE IAII+                             
Sbjct: 368 FELRKARDRGHALEGLAVALANIDEFIAIIKAAANPVIAKQELMGKAWDSSMVREMLARA 427

Query: 411 -----------------DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                             +        + L+++Q   IL +RL+ L  LE+ +I +E   
Sbjct: 428 ETDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKIVNEYKE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC----EVSRADKAT 509
           ++AE   +  LL   ++    I  E++EV+  F  +     RR+       E+   D  T
Sbjct: 488 VMAEISDLLDLLAKPERVTQVIEAELKEVQSEFGVAGGDTGRRSFIEVNATELFTEDLIT 547

Query: 510 LQQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
            Q  ++       + S         K       A   K  D ++    A+T D IL  S 
Sbjct: 548 PQDLVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIETLFVANTHDTILCFSD 607

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    +        G+ I  +  L   + I        Y     + + +S G  
Sbjct: 608 RGRMYWLKVWEVPQGSRTSRGKPIVNMFPLIEGEKITVILPIKGYQDNQYVFMATSLGTV 667

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMS 682
                S+     + G   + ++  + +       G H V +  +  K + F  + +  M 
Sbjct: 668 KKTRLSDFSNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAGKAVRFDENDVRPMG 727

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG-----------------LTWIDSAGRSYNRSEN 724
           R  +GVR  +  +G     +     E                   + + +    Y +   
Sbjct: 728 RTARGVRGMNLGEGHQVIAMLVAPAEAAEGVEAAVVDANGIAIPSSVLTATENGYGKRTP 787

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   RG  G +  +   R+GK +++
Sbjct: 788 ITEYTRHGRGTKGMIAIQTSERNGKVVAA 816



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGEN 667
             +L  +  G       +E   + R  K  + +     + + +   +    D + ++   
Sbjct: 772 SSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAALVSPEDQIMLITTG 831

Query: 668 RKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
             L+   + +I EM R  +GV L +  +G
Sbjct: 832 GVLVRTRVSEIREMGRATQGVTLINVDEG 860



 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G     P           + +  +     N  +V A +     +++++++ G     
Sbjct: 778 TENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAALVSPEDQIMLITTGGVLVRT 837

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
             SEI    R   G T + V    ++  + ++
Sbjct: 838 RVSEIREMGRATQGVTLINVDEGTRLSGLQRI 869


>gi|241764515|ref|ZP_04762535.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN]
 gi|241366051|gb|EER60655.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN]
          Length = 885

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/808 (30%), Positives = 395/808 (48%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRLAKIAHEMLGDIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L ++ NPE SI++L+E I  PDFPT G I+     + + YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHMLRNPETSIDELMEIIPAPDFPTAG-IIYGINGVKDGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L     P++  L  ++  +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALID-GQPRLCNLKDLIVVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------------ 411
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAIIRN                    
Sbjct: 360 EVVTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRSWDSKL 419

Query: 412 ---------------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                      +        + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRADGGVVNADDYRPEGLEREFGMGQDGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E   ++A  E +  +L   ++    I  E+  +K+ F +     RR     E   
Sbjct: 480 DKIVAEYKEVMAVIEDLLDILAKPERVSTIIGEELTSIKQEFGQHKLGARRS--IIEY-- 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+         R+ K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGDMRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADRFVFMGTSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  + R  +GVR    +DG     +     E  + + +    Y +  + 
Sbjct: 716 GGKAVRFDENDVRPLGRAARGVRGMMLEDGQSVIAMLVAEDETQSVLTATENGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      RG  G +  +   R+GK +++
Sbjct: 776 VEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 84.1 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 79/262 (30%), Gaps = 14/262 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G +   
Sbjct: 595 IANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMF---------PLQDGEKINV 645

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++   ++      +        +               + A++  +GD L  A    
Sbjct: 646 VLPLTGDMRSFPADRFVFMGTSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTD 705

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               ++L S  GKA      ++         ++ ++  +    I      D T  +L  +
Sbjct: 706 GKHDVMLFSDGGKAVRFDENDVRPLGRAARGVRGMMLEDGQSVIAMLVAEDETQSVLTAT 765

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFS 674
             G        E   + R  K  + +   E+   VV  T     D + ++ +   L+   
Sbjct: 766 ENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDKGVLVRTR 825

Query: 675 IDQIPEMSRG-KGVRLQSYKDG 695
           + +I E+ R  +GV L +  +G
Sbjct: 826 VSEIRELGRATQGVTLIALDEG 847



 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 2/104 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
            T  +L  + +G                 + +  +     N  +V A +  +  ++++++
Sbjct: 757 ETQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLIT 816

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
            KG       SEI    R   G T + +    K+  + ++  + 
Sbjct: 817 DKGVLVRTRVSEIRELGRATQGVTLIALDEGSKLSGLQRIVEND 860


>gi|189423108|ref|YP_001950285.1| DNA gyrase subunit alpha [Geobacter lovleyi SZ]
 gi|189419367|gb|ACD93765.1| DNA gyrase, A subunit [Geobacter lovleyi SZ]
          Length = 848

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/779 (32%), Positives = 388/779 (49%), Gaps = 41/779 (5%)

Query: 13  VEENVKA---VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           ++E V     V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM++MG D+ 
Sbjct: 1   MQEQVTQKVAVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLYAMNDMGNDYN 60

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS AA 
Sbjct: 61  KPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSPAAM 120

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM Q+   +L  ++++ V F   Y+E   EP V P+KFPNLL NG+SGIAVGMAT
Sbjct: 121 RYTEIRMKQLTHELLADLEKETVPFTPNYDESLYEPAVLPAKFPNLLVNGSSGIAVGMAT 180

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +A +ALI NP +S E+LLE + GPDFPTGG I   R+ I++ Y  GRG 
Sbjct: 181 NIPPHNLGEIIDAIIALIHNPALSYEELLELVPGPDFPTGGTIY-GRQGIIDGYATGRGV 239

Query: 250 FRVRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            ++RA+  VE         IVVTEIPYQV K+RLI  IAEL+  K+I  + D+RDES  D
Sbjct: 240 IQIRAKAHVENSKKHDRESIVVTEIPYQVNKARLITSIAELVKEKKIEGISDLRDESDRD 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  + ++L+  ++  + M+T F +NM  +   R P++M L  ++  ++ HR
Sbjct: 300 GMRIVIDLKKDENAEVLLNQLYKHTQMQTSFGINMLAIVHNR-PKLMSLAEMMHYFIEHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------- 415
           RE++ +R+ F ++  + R  IL+GL IA   +D +I +IR    P               
Sbjct: 359 REMVTKRTLFELKKAEARAHILEGLKIALDWLDAVIELIRESKTPPEAKLGLMEGRFADP 418

Query: 416 ------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                              L+E Q  AIL +RL+ L  LE  +I +E +++L    ++  
Sbjct: 419 DYLQRLNLPRPAGYEKAVQLSEIQAQAILEMRLQRLTGLERDKIIAEYEDILRLIARLKE 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +    I  E+ E+KE F           T            +  +       + 
Sbjct: 479 ILGSDAEIMKIIVGELTEIKERFGDKRRTEIVHQTADISLEDTIEDAEMVVTVSHTGYIK 538

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS- 582
            S     R+ +      + +  +E D ++    A T D +L  S  G+ Y +    +   
Sbjct: 539 RSAVDLYRAQRRGGKGKTGMKTREEDFVEQLFIASTKDFLLFFSDMGRVYRIKVYEIPEG 598

Query: 583 -GRGHGEAIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRK 637
                G+A+  L+++   + I               LL+ +  G        E +     
Sbjct: 599 SRTTKGKAVVNLVNVQEGEKITAILPVKDLNREDLYLLMATRNGVVKKTPLVEYLNIRTT 658

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD- 694
           G   + +   +K+  V    G   V +   + K + F       M R  +GVR  + +  
Sbjct: 659 GINAVNLDEGDKLISVALTDGQKDVFLASRHGKAIRFPESDARPMGRVTRGVRGMNLEAR 718

Query: 695 GGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +        G T        + +  +        RGG G +  K   R+G  + 
Sbjct: 719 DEVIGMEVVDPTATGSTIFTLTENGFGKRTDLDEYRGQSRGGKGLITIKTTTRNGLVVG 777



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 66/177 (37%), Gaps = 9/177 (5%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  ++A++  EGD L           + L S  GKA   P  +          ++ +
Sbjct: 654 NIRTTGINAVNLDEGDKLISVALTDGQKDVFLASRHGKAIRFPESDARPMGRVTRGVRGM 713

Query: 594 IDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---E 647
            +L    +++   V D T     +  ++  G     +  E    +R GK  + + +    
Sbjct: 714 -NLEARDEVIGMEVVDPTATGSTIFTLTENGFGKRTDLDEYRGQSRGGKGLITIKTTTRN 772

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  V++V  +  + V+ +  K+L   +     + R  +GVR+   ++      + 
Sbjct: 773 GLVVGVMQVNDENQLMVITDQGKILRVPVAGFSVIGRNTQGVRVMVTEEQEKIVAVA 829


>gi|90407750|ref|ZP_01215928.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3]
 gi|90311110|gb|EAS39217.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3]
          Length = 906

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/808 (30%), Positives = 393/808 (48%), Gaps = 73/808 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +  D+   +KKS
Sbjct: 7   DVSPINIEDELKNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKIAHELLADLDKETVDFVPNYDGTELIPEVMPTKIPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI+NP+++I++L+EYI GPDFPT G I+  R+ I++ Y+ GRG  ++RA+
Sbjct: 187 LGEVIDGCLALINNPDLTIDQLIEYIPGPDFPTAG-IINGRKGIIDGYKTGRGKLKIRAK 245

Query: 256 WCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             VE     G   I+V E+PYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++ 
Sbjct: 246 ARVEVNEKTGRETIIVDELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRMVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + M++ F +NM  L     P+++ L  +L  ++ HRREV+ R
Sbjct: 306 EVKRGEVGEVILNNLYAQTQMQSSFGINMVALDH-GQPKLLNLKEMLHAFILHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R+ F ++    R  +L+GL I+  NI+ II +IR+   P                     
Sbjct: 365 RTVFELKKARARAHLLEGLAISLANIEPIIELIRHSSTPAEAKTALQAQGWKLGNVAAML 424

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                             +    + +T+ Q  AIL++RL  L  LE  +I +E   L+  
Sbjct: 425 EASGVDVARPDGLAIEFGMRDDLYFMTDTQAQAILDMRLHKLTGLEHEKILNEYKELIEI 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L +  +    I  E+ +V+  F+ +       +                +   
Sbjct: 485 ITALLFILENPHRLMEVITEELNDVRANFADARRTEITASETDLCMEDLITEEDVVVTLS 544

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               V         + +      SA   K+ D +   L A T D IL  ST G+ Y L  
Sbjct: 545 HEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIDKLLVASTHDTILCFSTRGRLYWLKV 604

Query: 578 GNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
             L   S +  G  I  ++ L   + I        YD    + + ++ G       S   
Sbjct: 605 FQLPLASRQARGRPIINILPLEQGERITAILPVRTYDDDKFVFMATANGTVKKTALSAYS 664

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ-------------- 677
                G   + ++ + ++   +   G+  + +  +  K++ F   +              
Sbjct: 665 RPRASGLIAINLNDDNELIGALITNGENEIMIFSDAGKVVRFKEAEETLVVDEQGNPVLD 724

Query: 678 -----------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
                      +  M R   GVR    K+G  +  +      G   +      Y +    
Sbjct: 725 ENGVQEIKFKGVRPMGRTATGVRGIKLKEGEKAVSLIVPNATG-HILTCTENGYGKRTPL 783

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  R   G +  K   R+GK + +
Sbjct: 784 SDYASKSRATQGVISIKVSERNGKVVGA 811



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKM 650
           I L   +  V+  V ++T  +L  +  G       S+  + +R   G   +KVS    K+
Sbjct: 749 IKLKEGEKAVSLIVPNATGHILTCTENGYGKRTPLSDYASKSRATQGVISIKVSERNGKV 808

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
              V+V   D + ++     L+   +  +  + R  +GV L   +D      +
Sbjct: 809 VGAVQVDENDEIMLISNRGTLVRTPVHGVSIVGRNTQGVTLIRTRDDEKIVAL 861


>gi|322381378|ref|ZP_08055381.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154954|gb|EFX47225.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 826

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/761 (31%), Positives = 414/761 (54%), Gaps = 30/761 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
                  VK V + F +   ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+   
Sbjct: 10  TEESRSQVKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPD 69

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGD AAA 
Sbjct: 70  KPHKKSARIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAM 129

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++A  +L+ ++++ +D+   Y+ E+ EPVV P++FPNL+ NG+SGIAVGMAT
Sbjct: 130 RYTEARLSKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMAT 189

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  L LI+NP+++  +L+  I GPDFPTG  I+  RE I ++Y  GRG 
Sbjct: 190 NIPPHNLGEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYIL-GREGIRQAYSTGRGS 248

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  +EEV   +  I+V E+PYQV K+RLIEKIAEL+  K+I  + D+RDES  + 
Sbjct: 249 VTMRAKTTIEEVNNKA-RIIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNG 307

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R ++P++++ ++F  + +++ F +    L     P+V+ L  +L  +L H+R
Sbjct: 308 MRIVIELRRDVNPNVVLNNLFKHTALQSNFGIINIALV-NGEPKVLNLKEMLYYYLEHQR 366

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++  + R  IL+GL IA  ++DE+IA+IR+       +  ++ +F L+ +
Sbjct: 367 VVIRRRTEYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQFELSHD 426

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I++E   L+A+  ++ ++L   +     I+ E+++++  +
Sbjct: 427 QAQAILDMRLQRLTGLEREKIENEYKELMAKIAELKAILADEQLILKIISEELQQIRASY 486

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT   E++  + A   + +I +E + + I++ G+++          +    
Sbjct: 487 GDE-----RRT---EITIGEDAIEDEDLIPREEVVITITHSGYVKRLPVSTYRSQRRGGR 538

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +  +  K  D ++     ++   ++  +  GK Y L A  +        G  I  LI +
Sbjct: 539 GVVGMDTKNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPELGRTARGTPIINLIQI 598

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + +        ++S   L   + +G        +     + G   + +  ++++  V
Sbjct: 599 EQGETVNAVIPIESFESGHFLFFATQQGIVKKTPLKDYNNIRKGGLIAINLREDDRLIGV 658

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
               G+ ++ +       + F    +  M R   GV+     +      +   + E  T 
Sbjct: 659 KLTDGNCNIIMGTRQGMSIHFPERDVRSMGRAATGVKGIHISEDDAVIDMDI-VDENNTV 717

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    + + +        +  RGG G        ++G  + 
Sbjct: 718 LIVTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSKNGPVVG 758



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 6/151 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 I++ +  G +   P  ++ S       +   I ++ +  ++   + D    +L+
Sbjct: 661 TDGNCNIIMGTRQGMSIHFPERDVRSMGRAATGV-KGIHISEDDAVIDMDIVDENNTVLI 719

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENRKLLI 672
           V+SKG       SE    TR GK    ++       +  +  V  D  + ++  +  ++ 
Sbjct: 720 VTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSKNGPVVGLKVVEEDEDLMIITASGTVIR 779

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            S+  I  M R  +GVRL + ++      + 
Sbjct: 780 TSMSGISIMGRNTQGVRLINTREDDEVATVT 810



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            +  +H  E D++         + +L++++ G     P          G+ I+ L   + 
Sbjct: 693 GVKGIHISEDDAVIDMDIVDENNTVLIVTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSK 752

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVKV 656
           N  +V   V +    L+++++ G       S   I+    +G   +    ++++  V +V
Sbjct: 753 NGPVVGLKVVEEDEDLMIITASGTVIRTSMSGISIMGRNTQGVRLINTREDDEVATVTRV 812


>gi|261868281|ref|YP_003256203.1| DNA gyrase subunit A [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413613|gb|ACX82984.1| DNA gyrase, A subunit [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 887

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/810 (31%), Positives = 397/810 (49%), Gaps = 73/810 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VSL   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +   ++K
Sbjct: 6   QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG++DGD+ AA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L+ +I GPDFPT   ++  R+ I E+Y+ GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAA-LINGRKGIEEAYKTGRGKIYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E   +G   I+V EIPYQV K++LIEKIA+ +  K+I  +  +RDES +D   ++ 
Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++ L+ M+    +N+  L     P+++ L  +++ ++ HRREV+ R
Sbjct: 305 EIKRDAVGEVVLNNLYALTQMQVTLGINIVALDH-GQPKLLNLKQLIEAFVLHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R+ F ++    R  IL+GL IA  N+D II +IR    P+                    
Sbjct: 364 RTIFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLTHPWQLGHVADML 423

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                             +    + LTE Q  AIL+LRL+ L  L   +I  E   LL  
Sbjct: 424 AASGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDA 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             K+  +L S ++    I  E+ +++E F+          +         A     +   
Sbjct: 484 IGKLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLS 543

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y L  
Sbjct: 544 HEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKV 603

Query: 578 GNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
             L        G  I  ++ LN N+ I        Y+    +++ ++ G    +  +E  
Sbjct: 604 YQLPQASRGARGRPIVNILPLNENERITAILPVAAYEEDKFVVMATAGGIVKKITLTEFS 663

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
                G   L +  E+++  V    G + + +     +++ FS   +  M R   GVR  
Sbjct: 664 RPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAMGRLATGVRGI 723

Query: 691 SYK--------------------------DGGISDVICFKICE-GLTWIDSAGRSYNRSE 723
                                        D  I  V+   I +     + +    Y +  
Sbjct: 724 KLALTNDLNDDESAVEIEDVSDDNAEETLDLNIDKVVSLVIPKNNGEILTATQNGYGKRT 783

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    R   G +  K   R+GK +++
Sbjct: 784 KLDEYPTKSRNTKGVISIKVSERNGKVVAA 813


>gi|295108650|emb|CBL22603.1| DNA gyrase subunit A [Ruminococcus obeum A2-162]
          Length = 851

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/774 (30%), Positives = 399/774 (51%), Gaps = 39/774 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + +  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+ 
Sbjct: 1   MEDN---IFDKIHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +L  +++D VDF+  ++E + EPVV P+++PNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPARYPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E+  A + +IDN      + +IE+LLE + GPDFPTG  I+     I 
Sbjct: 178 GMATNIPPHNLREVIGAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + D
Sbjct: 237 EAYRTGRGKIRVRAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVREKKIDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR---VPQVMPL 357
           + D S+ +   +     +  + ++++  ++  + ++  F + M  L        P+V+ L
Sbjct: 297 LNDHSSREGMRICIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTL 356

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--- 414
             +LK +LAH+ +V+ RR+ + +     R  IL+GLL A  NIDE+I IIR     +   
Sbjct: 357 PEMLKYYLAHQEDVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAK 416

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++ RF LT+ Q  AI+++RLR+L  LE  ++++E   L+ +  K+ ++L         
Sbjct: 417 QELMDRFELTDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRKLKAILADRNTLLRV 476

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  EI  + E +        RRT              + MI +E   + ++  G+I+ + 
Sbjct: 477 IREEILAISEKYGD-----DRRTAI---GFDAYDISMEDMIPRENTVITMTKLGYIKRMT 528

Query: 535 SHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
             +          +  +   + D ++  +   T   ++  +  G+ Y L A  +      
Sbjct: 529 VDNFRSQNRGGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVYRLKAYEIPEAGRT 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G AI  L+ L   + I        ++    L++ + KG        +     + G   
Sbjct: 589 ARGTAIINLLQLMPGERITAVIPISKFEEGHYLMMATRKGLVKKTPIQDYANVRKIGLAA 648

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           + +  ++++  V        V +V +  + + F    +    R   GVR  +  DG    
Sbjct: 649 ISLRDDDELIEVKATNDKKDVILVTKYGQCIRFKETDVRSTGRVSMGVRGINLLDGDEVV 708

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     +G   +  +     +  +        RGG G    K   ++G  + +
Sbjct: 709 AMQLN-TQGYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCYKITEKTGNVIGA 761



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 6/170 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
               + L+A+  ++ D L      +    ++L++  G+       ++ S       ++ +
Sbjct: 640 NVRKIGLAAISLRDDDELIEVKATNDKKDVILVTKYGQCIRFKETDVRSTGRVSMGVRGI 699

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
             L+ ++ +V   +      LLVVS  G       SE     R GK      +   +   
Sbjct: 700 NLLDGDE-VVAMQLNTQGYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCYKITEKTGNV 758

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
           +        + + ++     ++      I  + R   GV+L +  DG   
Sbjct: 759 IGAKAVNEENEIMMITTEGIIIRLQCSDISILGRITSGVKLINLSDGVTV 808


>gi|295677285|ref|YP_003605809.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002]
 gi|295437128|gb|ADG16298.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002]
          Length = 860

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/782 (30%), Positives = 379/782 (48%), Gaps = 56/782 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NPE +I++L+E I  PDFPT G I+     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  +L  +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEMLTCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------------------ 414
            R  +L+GL +A  NIDE IA+I+    P                               
Sbjct: 359 ERGHVLEGLAVALANIDEFIALIKAAPTPPIAKQELMSRSWDSSLVREMLSRAETDNASA 418

Query: 415 ----------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGREAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  +K  F  +             +       +  +    
Sbjct: 479 ADLLDILARPERISAIIVEELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ K       A   KE D +     A+T D IL  S  G+ Y +   
Sbjct: 539 AGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVY 598

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G  I  +  L   + I        + +   + + ++ G            
Sbjct: 599 EVPQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSADKFVFMATALGTVKKTPLEAFSR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             RKG   + +   + +       G H V +  ++ K + F  + +  M R  +GVR   
Sbjct: 659 PLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQ 718

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +DG     +     E  + + +    + +           RG  G +  +   R+G+ +
Sbjct: 719 LEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGRVV 778

Query: 752 SS 753
           ++
Sbjct: 779 AA 780



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 6/185 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 662 KGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 721

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
               I      D    +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 722 GQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 781

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG-GISDVICFKICEGLTW 711
            V  +  + ++     L+   + +I EM R  +GV L S  +G  +S +      EG + 
Sbjct: 782 LVDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEGESE 841

Query: 712 IDSAG 716
           IDS G
Sbjct: 842 IDSDG 846


>gi|170726654|ref|YP_001760680.1| DNA gyrase subunit A [Shewanella woodyi ATCC 51908]
 gi|169812001|gb|ACA86585.1| DNA gyrase, A subunit [Shewanella woodyi ATCC 51908]
          Length = 905

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/807 (31%), Positives = 392/807 (48%), Gaps = 67/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY LI GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLIDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +VA  +L  ++++ VD+   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKVAHQLLADLEKETVDYVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI+NP+++I +L+EYI GPDFPT G I+  R+ I+++Y  GRG  
Sbjct: 182 IPPHNLNEVVSGCLALIENPDLTINELMEYIPGPDFPTAG-IINGRKGIIDAYHTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  VE    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRAKAEVEIEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M++ F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVVEIKRGEVGEVVLNNLYAQTQMQSSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILESLAIALANIDPIIALIKASPTPAEAKVKLVAEGWELGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +   R+ LTE Q  AIL+LRL  L  LE  +I  E + 
Sbjct: 420 QSMLEKAGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S  +    I  E++EV E F                           
Sbjct: 480 LLEIIAALLYILRSSVRLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLINEEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +      +A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 540 VTLSHLGYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 599

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  ++ L+  + I        Y     +++ +S G       
Sbjct: 600 WLKVYQLPLASRTARGRPIVNILPLSEGERITAILPVREYAEDKYIIMATSHGTVKKTAL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID----------- 676
           +        G   + +   +++  V    G + + +     K++ F+             
Sbjct: 660 TAYSNPRANGIIAVNLKDGDQLIGVDITDGSNDIMLFSNEGKVVRFNEKARNSETGEVKL 719

Query: 677 ---------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
                     +  M R   GVR    +DG     +     EG   +      + +  +  
Sbjct: 720 DPETGEEMIALRAMGRTATGVRGIKLEDGQQVVSLIVPKGEGD-ILTVTENGFGKRTDLA 778

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  K   R+G  + +
Sbjct: 779 EYPAKSRGTKGVVSIKVSERNGAVVGA 805


>gi|300717615|ref|YP_003742418.1| DNA gyrase subunit A [Erwinia billingiae Eb661]
 gi|299063451|emb|CAX60571.1| DNA gyrase subunit A [Erwinia billingiae Eb661]
          Length = 887

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTRVPNLLINGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  I++E L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVISGCLAYIDDENITVEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I++ EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARGEVETDAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRLEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++T F +NM  L     P++MPL  IL+ +
Sbjct: 296 SDKDGMRIVVEVKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKIMPLKDILEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  N+D II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANLDPIIELIRHAANPAEAKAGLVARP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WALGNVAAMLERAGDNAARPEWLEDEFGIRDGEYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S ++    I  E+  +++ F           T         
Sbjct: 475 LDEYKELLDQIAELIRILESSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y     + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWNIFMATACGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + +  E+++  V    G D   +     K++ F+   +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLRDEDELIGVSLTNGADEAMLFSAAGKVVRFAETAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +      +     EG   +      Y +  N        R   G + 
Sbjct: 715 GRTASGVRGIKLAENDRVVSLIVPQEEGA-IMTVTQNGYGKRTNTSEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGPVIGA 786



 Score = 37.4 bits (85), Expect = 10.0,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 53/150 (35%), Gaps = 2/150 (1%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            +AM+      VV      +R++   +  +  +   E D +   +       I+ ++ +G
Sbjct: 692 DEAMLFSAAGKVVRFAETAVRAMGRTASGVRGIKLAENDRVVSLIVPQEEGAIMTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  ++ A     + ++++++  G       SE
Sbjct: 752 YGKRTNTSEYPTKSRATQGVISIKVTERNGPVIGAVQVVDSDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
           +    R   G   ++ + +E +  + +V  
Sbjct: 812 VSVVGRNTQGVILIRTAEDENVVGLQRVAE 841


>gi|194016311|ref|ZP_03054925.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061]
 gi|194011784|gb|EDW21352.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061]
          Length = 833

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/764 (32%), Positives = 413/764 (54%), Gaps = 31/764 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  +T    NV+ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQHTP---NVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     FKKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 58  MTSDKPFKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  IL+ + +D +D++D Y+  + EP+V P++FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARLSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+  NPE++ ++L++ I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQII-GRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   IV+ EIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITLRAKSDIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +  +L+ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 297 DRNGMRIVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVD-GQPKVLSLKQCLEYYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ ++ RR+++ ++  + R  IL+GL IA  ++DE+IA+IR        +  ++  +S
Sbjct: 356 EHQKVIIRRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLMENYS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+
Sbjct: 416 LSEKQAQAILDMRLQRLTGLEREKIEDEYKGLVDLIAELKAILADNEKVLEIIREELIEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +I  E I + +++ G+I+          K
Sbjct: 476 KERFND-----TRRTEIV--TAGIETIEDEDLIPVENIVITLTHNGYIKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +       +   I  
Sbjct: 529 RGGKGVQGMGTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +D    L   +  G +     S+       G   L +  E++
Sbjct: 589 LLEVEKGEWINAIIPVSEFDENSYLFFTTRHGVSKRTTLSQFANIRNNGLIALSLRDEDE 648

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G+  + +  +   L+ F+   + EM R   GV+  +  +  I   +     +
Sbjct: 649 LMAVRLTNGEKQIIIGTKKGMLIRFAETDVREMGRTAAGVKGITLSEDDIVVGMEILEPD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +    R Y +   +    +  RGG G    K    +G  +
Sbjct: 709 -ANVLIVTERGYGKLTPEKEYRVQTRGGKGLKTCKITDNNGPLV 751



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 8/178 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL  ++ D L      +   +I++ +  G        ++        A    
Sbjct: 632 NIRNNGLIALSLRDEDELMAVRLTNGEKQIIIGTKKGMLIRFAETDVREMGRTA-AGVKG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L+ +  +V   + +    +L+V+ +G   +  E E    TR GK        +    +
Sbjct: 691 ITLSEDDIVVGMEILEPDANVLIVTERGYGKLTPEKEYRVQTRGGKGLKTCKITDNNGPL 750

Query: 651 KLVVKVT---GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
             V        + + ++  +  ++  ++  I    R  +GVRL    D      +   
Sbjct: 751 VTVKATNAEAEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEEHVATVALV 808


>gi|119472399|ref|ZP_01614517.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales
           bacterium TW-7]
 gi|119444921|gb|EAW26219.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales
           bacterium TW-7]
          Length = 891

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/806 (31%), Positives = 390/806 (48%), Gaps = 66/806 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDLANEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +++  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTKVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI NP+++I +L++YI GPDFPT   I+  ++ I ++Y+ GRG  
Sbjct: 182 IPPHNLTEVINGCLALIVNPDLTITELMDYIPGPDFPTAA-IINGKKGIEQAYQTGRGKV 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D 
Sbjct: 241 YMRARADIETDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++ +++  + ++T F +NM  L     P+   L  +L+E++ HRR
Sbjct: 301 MRIVIEIKRGDVGEVILNNLYAQTQLQTVFGMNMVALI-NNQPKCFNLKEMLEEFIIHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------- 415
           EV+ RR+ F ++    R  +L+GL IA  NID II +IR    P                
Sbjct: 360 EVVTRRTVFDLRKARDRAHMLEGLAIALANIDPIIELIRKSPTPAEAKIALTARSWELGN 419

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ ++E Q  AIL+LRL  L  LE  +I SE 
Sbjct: 420 VKAMLEKAGEANVARPDWLADDLGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILSEY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             LL    ++  +L S ++    I  E+ E+K  +                         
Sbjct: 480 QTLLDLIAELLHILASPERLMEVIRDELVEIKAQYGDERRTEINAAAHDISLEDLITEEN 539

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   K+ D ++  L A+T D IL  ST G+
Sbjct: 540 VVVTLSHEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGR 599

Query: 572 AYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L   S    G+ I  L+ L  ++ I        Y+    + + ++ G     
Sbjct: 600 LYWLKVYQLPLASRAARGKPIVNLLPLEADERITAILPVREYEEDKYIFMATAFGTVKKT 659

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ-------- 677
             +        G   + ++  + +  V    G + + +  +  K++ F   +        
Sbjct: 660 PLTAYSRQRASGIIAVNLNEGDSLIGVDITDGTNEIMLFTDAGKVVRFKEAEESAVVDEN 719

Query: 678 ---------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
                    +  M R   GVR     D      +     +G   +      Y +      
Sbjct: 720 GNPEIRFKGVRPMGRTATGVRGIKMTDEQRVVSLIVPKTDGA-ILTVTENGYGKRTQLED 778

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLSS 753
                R   G +  K   R+G  + +
Sbjct: 779 YPSKSRATQGVVSIKVSERNGAVVGA 804


>gi|147921291|ref|YP_684895.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured
           methanogenic archaeon RC-I]
 gi|110620291|emb|CAJ35569.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured
           methanogenic archaeon RC-I]
          Length = 826

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/757 (33%), Positives = 396/757 (52%), Gaps = 31/757 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++ M E+G      +KK
Sbjct: 19  ETLLPVQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKK 78

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGD ++YD++VR+AQ F  RY L+ GQGNFG+IDGD AAA RYTE 
Sbjct: 79  SARVVGDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEV 138

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++AE IL  +D++ VDF   ++E   EPVV P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 139 RLERIAEEILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPPH 198

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  +A+IDNPEI   +LL Y+ GPDFPT G  +  +E I E+Y  GRG  R+RA
Sbjct: 199 NLGEIVDGTIAVIDNPEIEPIELLNYVKGPDFPTAG-FIYGKEGIKEAYLTGRGSIRMRA 257

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + +   G   I+VTEIPY V K+RLIE IA+L+  K+I  + D+RDES  D   ++ 
Sbjct: 258 KAEIVDEN-GKMSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMRIVI 316

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              ++ + ++++  +F  + ME+ F +N   L     P  + L   +  ++ HR+EV+ R
Sbjct: 317 ELKKAANANVILNQLFKHTQMESTFGVNNIALVD-NTPMTLSLKETIGYFIKHRQEVVTR 375

Query: 375 RSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           RS F ++    R  IL GLLI      +   II    N D+ K  ++ ++ L++ Q  AI
Sbjct: 376 RSQFELKKAQAREHILAGLLIALTNIDDFVRIIRGSANADEAKATLMEKYGLSDEQSRAI 435

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL  L  LE  +I  E  +L+ E   ++ +L S +   + I  E+ ++K  +     
Sbjct: 436 LDMRLARLTALERQKIDDERADLIKEIAHLNEVLASPQMVLDIIKAELLDMKAKYGDE-- 493

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RRT   E +      + + +I  E + V ISN G+I+ +   +          +  +
Sbjct: 494 ---RRTKIVESAGE---IVDEDLIPVENVVVTISNTGYIKRMPVDTYRTQRRGGVGIVGM 547

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---GRGHGEAIQLLIDLNHNQ 600
             KE D +     A T D IL  S  GK Y+L    +      +  G+AI  LI++   +
Sbjct: 548 ETKEEDFVVDLFVASTHDNILFFSNKGKVYSLKVYEIPPAASRQARGKAIINLINIEPGE 607

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +D    L++ + +G       S        G   + + S +++  V    
Sbjct: 608 AINAMIPIKTFDDQHFLVMCTREGTIKKTALSAFQNIRSTGIIAIGLESGDELISVKMTN 667

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G   V +   N K   FS  ++  M R   GV      +      +   +  G + +   
Sbjct: 668 GSQEVLIATRNGKCNRFSESEVRTMGRPAMGVIGIRLTENDKVIAMEI-VSPGQSVLTIC 726

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + +           RGG G +  K   R+G  ++
Sbjct: 727 ENGFGKRTPIEEYTAHHRGGQGMINIKTTLRNGAVVA 763



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 76/220 (34%), Gaps = 12/220 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKI 553
            E   A  A +     + +   V+ +  G I+           S  + A+  + GD L  
Sbjct: 603 IEPGEAINAMIPIKTFDDQHFLVMCTREGTIKKTALSAFQNIRSTGIIAIGLESGDELIS 662

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
               + +  +L+ + +GK        + +       +   I L  N  ++   +      
Sbjct: 663 VKMTNGSQEVLIATRNGKCNRFSESEVRTMGRPAMGVIG-IRLTENDKVIAMEIVSPGQS 721

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK----VSSEEKMKLVVKVTGDHVAVVGENRK 669
           +L +   G        E  A+ R G+  +     + +   + ++  +  D + +  +   
Sbjct: 722 VLTICENGFGKRTPIEEYTAHHRGGQGMINIKTTLRNGAVVAVISVMPDDQIVIASKEGM 781

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +   ++  IPE+ R  +GVR+   +       +   + E 
Sbjct: 782 MTRMNVTDIPEIGRNTQGVRVMKMRPEDSVVAVARLVSEK 821


>gi|319956757|ref|YP_004168020.1| DNA gyrase subunit a [Nitratifractor salsuginis DSM 16511]
 gi|319419161|gb|ADV46271.1| DNA gyrase subunit A [Nitratifractor salsuginis DSM 16511]
          Length = 843

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/752 (34%), Positives = 400/752 (53%), Gaps = 15/752 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E V+ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+E+GL   AA+
Sbjct: 7   NSEGVEQVKIEESIQGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTHRAAY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYT
Sbjct: 67  KKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRYT 126

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARMT++AE +L+ +D+D VDF   Y++   EP V PS+ PNLL NG++GIAVGMAT+IP
Sbjct: 127 EARMTKLAEELLRDIDKDTVDFVPNYDDSLREPDVLPSRVPNLLLNGSAGIAVGMATNIP 186

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H + E+ +A L  ++NPE  +E+L++ + GPDFPTGG ++  ++ I+++Y  GRG  +V
Sbjct: 187 PHRLDELIDAHLIRLENPEAEVEELMQVLKGPDFPTGG-VIFGKKGIIDAYSTGRGRIKV 245

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E+       IV+ E+PYQV KSRLIE IA+L+  K+I  + +IRDES  +   V
Sbjct: 246 RAKTHIEQHK-NREAIVIDELPYQVNKSRLIETIAQLVRDKQIEGISEIRDESDREGIRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R    D+++ ++F  + M+T F + M  +   + P+V  L  +L  ++ HR+ V+
Sbjct: 305 VIELKRDAMSDIVLNNLFKSTQMQTTFGIIMLAIV-NKEPKVFTLPELLDLFINHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVD 429
            RR+ F ++    R  IL+GL IA  NIDE+I IIR           ++SRF L+E Q  
Sbjct: 364 IRRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASADDSEARANLMSRFDLSEIQAR 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RLR L  LE  +I+SEL  L    E ++S+L S       I  E+ EVKE FS  
Sbjct: 424 AILEMRLRRLTGLEIEKIESELAELRKTIEYLESILKSETMIEEIIKKELLEVKEAFSDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                                   +       +           +      +A+   E D
Sbjct: 484 RRTEIVDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPVKQYEKQRRGGKGKTAVTTYEDD 543

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV 607
            ++    ++T D ++ ++  G+ Y L    +        G+A+  LI+L+ ++ I     
Sbjct: 544 FIERFFISNTHDTLMFVTDKGQLYWLKVYRIPEGSRTAKGKAVVNLINLDKDEKIKAIIP 603

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVA 662
              ++    L+  +  G       SE       G   + +   +++     +  D   + 
Sbjct: 604 TQDFNEDKSLVFFTRNGIVKRTNLSEYSNIRSVGVRAINLDENDELIDAKIIKPDTKWLF 663

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYN 720
           VV +    + F +  + E+ R  +GV    +K DG           E    +  + +   
Sbjct: 664 VVTKKGMCIRFPVSDVREIGRVARGVTAIKFKIDGDYVCGATTIENEEDEILIVSEKGMG 723

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +           R G G +  K  P++G  + 
Sbjct: 724 KRTPASEYREQSRAGKGVIAMKLTPKTGDVVG 755


>gi|169632683|ref|YP_001706419.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii SDF]
 gi|169151475|emb|CAP00226.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii]
          Length = 904

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/827 (30%), Positives = 407/827 (49%), Gaps = 95/827 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RMT++A  +L  +++D VD+   Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMTKLAHELLADLEKDTVDWEGNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  DNP ISIE L+EYI GPDFPT G I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYADNPNISIEGLMEYITGPDFPTSG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++  
Sbjct: 240 IRGKYHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F+ + +E  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVVVNNLFLNTQLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ F ++    R  IL+GL +A  NIDEII  I+    P                 
Sbjct: 359 VVTRRTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGV 418

Query: 420 -------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV AIL LRL  L  LE+ ++ 
Sbjct: 419 VALLEKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN        I  E+ +V + +  +     RRT   E   +   
Sbjct: 479 AEYTEILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDA-----RRTEIVE---SRVD 530

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+         ++ +      SA   K+ D ++  + A   
Sbjct: 531 FCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             +L  +  GK Y L    +       +   I  L+ L+  + +        +     + 
Sbjct: 591 ATVLCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFLENHYVF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + ++ G    VE  +       G   ++++ E+ +  V    G+  + +     K + F+
Sbjct: 651 MATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFA 710

Query: 675 IDQIPEMSR-GKGVRLQS-------YKDGGISD--------------------VICFKIC 706
              +  M R  KGVR            +                         V    + 
Sbjct: 711 ETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSADSSLVSRIVSLVVVP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 771 ETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT 657
            IV+  V   T ++L  S+ G       ++     R GK  + + + E   ++   V + 
Sbjct: 762 RIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSID 821

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICF 703
               + ++ +   L+     ++    R  +GVRL    ++  +  V+  
Sbjct: 822 ETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870


>gi|319404169|emb|CBI77762.1| topoisomerase IV subunit A [Bartonella rochalimae ATCC BAA-1498]
          Length = 749

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/747 (62%), Positives = 594/747 (79%), Gaps = 2/747 (0%)

Query: 6   ISNS--NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+    +  +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRIIHAM  
Sbjct: 1   MSDEMIRSFDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRL 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L+ G A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDG
Sbjct: 61  LRLNPGQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GI
Sbjct: 121 DNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSAGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP HNV E+C+AAL LI NP    + L ++++GPDFPTGGI+VE ++SI +SY
Sbjct: 181 AVGMATSIPPHNVAELCDAALYLIANPHADHKDLSQFVLGPDFPTGGILVEPKKSIEDSY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+R+RW  EE  RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI D
Sbjct: 241 RTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAED+RIVL PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP V+ L   L++
Sbjct: 301 ESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQ 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL HR+EVL RRS++R+  ID R+EIL+G LIAYLN++E+I IIR  D+PK  ++ RF L
Sbjct: 361 WLQHRKEVLIRRSNYRLNEIDCRLEILQGYLIAYLNLNEVIQIIREHDEPKKELILRFKL 420

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TENQ ++ILN+RLRSLRKLEE+Q++ E D+L  EKEK+ +LLNS  +QW  IA EI  V+
Sbjct: 421 TENQAESILNMRLRSLRKLEEFQLRKEFDSLKIEKEKLQNLLNSNIKQWKVIAEEITRVR 480

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           +IF   T LG+RRTTF +  R D+  + QAMIEKEP+T+VIS +GW+R+LK H  D   L
Sbjct: 481 KIFGPETFLGKRRTTFEDAPRHDENDIHQAMIEKEPVTIVISEKGWVRALKGHLNDYKTL 540

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FKEGD LK+A  A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D+N+  DI+
Sbjct: 541 SFKEGDGLKLAFPAFTTDKIIVISTGGKFFTISANTLPGGRGHGEPIRILVDMNNEHDIL 600

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           TAFV++   K L++SS GN FIV E++IIANTRKGK  + V S + +KL + V GD++A+
Sbjct: 601 TAFVHNVQGKRLLISSYGNGFIVSETDIIANTRKGKQVMNVKSLDSLKLCIPVEGDYIAI 660

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           VGENRK+LIFSI+QIPEMSRGKGVRLQ YKDGGI D   F + EGL+W D+A RS+NR  
Sbjct: 661 VGENRKMLIFSIEQIPEMSRGKGVRLQRYKDGGIVDAKTFTLSEGLSWQDTAERSFNRQA 720

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           N+L+ W+G R G G LVPKGFP+SGKF
Sbjct: 721 NELVEWMGTRAGTGRLVPKGFPKSGKF 747


>gi|294626374|ref|ZP_06704976.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294665966|ref|ZP_06731230.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292599375|gb|EFF43510.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292604269|gb|EFF47656.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 899

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/819 (31%), Positives = 384/819 (46%), Gaps = 80/819 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     A+
Sbjct: 4   TAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYT
Sbjct: 64  FKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP
Sbjct: 124 ESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALID PE+ +E L+EYI GPDFPT G I+     I   YR GRG  R+
Sbjct: 184 PHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAG-IINGTAGIAAGYRTGRGRVRI 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  VE    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME  F +NM  L     PQ+M L  +L+ ++ HRREV+
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALID-GRPQLMNLKQMLEAFIRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P+                  
Sbjct: 362 TRRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGA 421

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + L+E Q   IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
              E +  +L +       I  E+  ++E +        R +          A     + 
Sbjct: 482 GVIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ +      SA   KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
           P   L        G  I   I L   + +        Y     +   +  G       SE
Sbjct: 602 PVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    GD  V +   N K + F    +  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVR 721

Query: 689 LQSYKDGGISDVICFKICEG----------------------------------LTWIDS 714
                 G     +      G                                     + +
Sbjct: 722 GIRLTKGEEVVSLIVAERAGGVEEEIEGDEVDDVVEATDGSESAVIEVADDGNVAYILTA 781

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+GK + +
Sbjct: 782 TENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGEN 667
             +L  +  G       +E     R  +  + +     + + ++ V+    D V ++ + 
Sbjct: 776 AYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGATDEVLLISDG 835

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
             L+     +I  + R  +GV L     G     +
Sbjct: 836 GTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAV 870


>gi|21242381|ref|NP_641963.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107819|gb|AAM36499.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306]
          Length = 899

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/819 (31%), Positives = 384/819 (46%), Gaps = 80/819 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     A+
Sbjct: 4   TAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYT
Sbjct: 64  FKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP
Sbjct: 124 ESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALID PE+ +E L+EYI GPDFPT G I+     I   YR GRG  R+
Sbjct: 184 PHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAG-IINGTAGIAAGYRTGRGRVRI 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  VE    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME  F +NM  L     PQ+M L  +L+ ++ HRREV+
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALID-GRPQLMNLKQMLEAFIRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P+                  
Sbjct: 362 TRRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGA 421

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + L+E Q   IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLGAAGAEASKPEDLPPGVGLIQGFYQLSEVQAAQILEMRLHRLTGLEQEKLTDEYKQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
              E +  +L +       I  E+  V+E +        R +          A     + 
Sbjct: 482 GVIEGLIRILENPDVLLQVIRDELINVREEYGDERRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ +      SA   KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
           P   L        G  I   I L   + +        Y     +   +  G       SE
Sbjct: 602 PVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    GD  V +   N K + F    +  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVR 721

Query: 689 LQSYKDGGISDVICFKICEG----------------------------------LTWIDS 714
                 G     +      G                                     + +
Sbjct: 722 GIRLTKGEEVVSLIVAERAGGVEEEIEGDEVDDVVEATDGGESAVIEVADDGNVAYILTA 781

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+GK + +
Sbjct: 782 TENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGEN 667
             +L  +  G       +E     R  +  + +     + + ++ V+    D V ++ + 
Sbjct: 776 AYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGATDEVLLISDG 835

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
             L+     +I  + R  +GV L     G     +
Sbjct: 836 GTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAV 870


>gi|304398195|ref|ZP_07380069.1| DNA gyrase, A subunit [Pantoea sp. aB]
 gi|304354061|gb|EFM18434.1| DNA gyrase, A subunit [Pantoea sp. aB]
          Length = 890

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 392/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+    LA I+N +ISIE+L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLREVINGCLAYIENEDISIEELMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I++ E+PYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARGEVEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++T F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKIMALKEILDAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVSAMLERAGDDAARPEWLDPQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L+   +    I  E+  +++ F           T         
Sbjct: 475 LDEYKGLLEQIAELLRILSDADRLMEVIREELELMRDQFGDERRTEITANTADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y     + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFNIFMATALGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                  E       G   + +  ++++  V    G D   +     K++ F+   +  M
Sbjct: 655 VKKTALKEFSRPRSAGIIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAETAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +G     +     EG   +      Y +   +       R   G + 
Sbjct: 715 GRTASGVRGIRLAEGDRVVSLIVPREEGA-IMTVTQNGYGKRTANSEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGPVIGA 786


>gi|323526962|ref|YP_004229115.1| DNA gyrase subunit A [Burkholderia sp. CCGE1001]
 gi|323383964|gb|ADX56055.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1001]
          Length = 862

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/782 (30%), Positives = 379/782 (48%), Gaps = 56/782 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NPE +I++L+E I  PDFPT G I+     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  +L  +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------------------ 414
            R  +L+GL +A  NIDE IAII+    P                               
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETENASA 418

Query: 415 ----------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRDAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  +K  F  +             +       +  +    
Sbjct: 479 ADLLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ K       A   KE D +     A+T D IL  S  G+ Y +   
Sbjct: 539 AGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVY 598

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G  I  +  L   + I        + +   + + ++ G            
Sbjct: 599 EVPQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSADKFVFMATALGTVKKTPLEAFSR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             RKG   + +   + +       G H V +  ++ K + F  + +  M R  +GVR   
Sbjct: 659 PLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQ 718

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +DG     +     E  + + +    + +           RG  G +  +   R+GK +
Sbjct: 719 LEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVV 778

Query: 752 SS 753
           ++
Sbjct: 779 AA 780



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 662 KGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 721

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
               I      D    +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 722 GQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 781

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V  +  + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 782 LVDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEG 824


>gi|200387865|ref|ZP_03214477.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199604963|gb|EDZ03508.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 878

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|16761200|ref|NP_456817.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|213646449|ref|ZP_03376502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|25292862|pir||AF0790 DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503499|emb|CAD07504.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 878

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|126668593|ref|ZP_01739546.1| DNA gyrase, A subunit [Marinobacter sp. ELB17]
 gi|126626923|gb|EAZ97567.1| DNA gyrase, A subunit [Marinobacter sp. ELB17]
          Length = 895

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/786 (32%), Positives = 399/786 (50%), Gaps = 48/786 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMS +  D+  A+
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLNNDWNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +D++ VDF   Y+  +  PVV P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMKKIAHSLLADLDKETVDFVPNYDGTEQIPVVMPTRVPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALID+P++SI++L+E+I GPDFPT G I+  R  IVE+YR GRG   +
Sbjct: 184 PHNLTEVVKGCLALIDDPDLSIDQLMEFIPGPDFPTEG-IINGRAGIVEAYRTGRGRVYI 242

Query: 253 RARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR  V  +       +++TE+PYQ+ KSRLIEKIAEL+  KR+  + ++RDES ++   
Sbjct: 243 RARHEVEHDAKTKRDAVIITELPYQLNKSRLIEKIAELVKEKRLEGITELRDESNKEGIR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  +PD+++ ++F  + +ET F +NM  L     P+++ L  +L  ++ HRREV
Sbjct: 303 VVIELRRGENPDVIINNLFKQTQLETVFGINMVALID-GEPRILNLKEMLDAFIRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419
           + RR+ F ++    R  IL+GL +A  NIDEIIA+I+                       
Sbjct: 362 VTRRTIFELRKARERGHILEGLAVALANIDEIIALIKASPSAAEAKEKLIAQGWGSEDVM 421

Query: 420 -------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                    ++ L+  Q  AIL+LRL  L  LE  ++++E   +
Sbjct: 422 AMLERAGEDACRPDDLPEIYGLRNGKYHLSPEQAQAILDLRLHRLTGLETEKLQNEYREI 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L     +  +L + ++    I  E++ + E F          +             +  +
Sbjct: 482 LERIADLLDILGNPERLMQVIRDELQAIVEEFGDERRTEITSSRRDLTVADLIDEEELVV 541

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
                           ++ +      +A   K+ D ++  L A++ D IL  S  GK Y 
Sbjct: 542 TISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYW 601

Query: 575 LPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEES 629
           L    +        G  +  ++ L+  + I T      Y     +L+ +S G        
Sbjct: 602 LRVFEIPRASRASRGRPMVNILPLDEGERITTFLPVRDYPEDQFVLMATSAGVVKKTPLP 661

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
                   G   L +   + +       G   + +     K + F  + +  MSR  +GV
Sbjct: 662 NFSRPRSSGLIALSLDEGDTLIGAAITDGSAEIMLFSTAGKAVRFKEEAVRPMSRTARGV 721

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R     +G    V      +    + ++   Y +  N        RG  G +  +   R+
Sbjct: 722 RGIRMAEGHHV-VSLIIPQDDAVLLMASEHGYGKRTNLNEFPTYGRGSQGVIAMQCSDRN 780

Query: 748 GKFLSS 753
           G  +++
Sbjct: 781 GNLVTA 786



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 106/349 (30%), Gaps = 21/349 (6%)

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
               E     +S R       +   + L++   +          + + +       + T 
Sbjct: 512 EFGDERRTEITSSRRDLTVADLIDEEELVVTISHSGYAKTQAVEDYQAQRRGGRGKAATS 571

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            + +  +   L  +    +  +       +      +    S   +   +   +      
Sbjct: 572 MKDEDFVEKLL--VANSHDTILCFSNRGKVYWLRVFEIPRASRASRGRPMVNIL------ 623

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
                D G R TTF  V    +      ++      V  +        +  S  L AL  
Sbjct: 624 ---PLDEGERITTFLPVRDYPEDQFV--LMATSAGVVKKTPLPNFSRPR--SSGLIALSL 676

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            EGD+L  A     +  I+L ST GKA       +         ++  I +     +V+ 
Sbjct: 677 DEGDTLIGAAITDGSAEIMLFSTAGKAVRFKEEAVRPMSRTARGVRG-IRMAEGHHVVSL 735

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHV 661
            +      LL+ S  G       +E     R   G   ++ S      +  +    GD +
Sbjct: 736 IIPQDDAVLLMASEHGYGKRTNLNEFPTYGRGSQGVIAMQCSDRNGNLVTALQLFDGDEM 795

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            ++ +   L+    D++  +SR  +GVRL          V   +I E  
Sbjct: 796 MLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERIAETD 844


>gi|254492429|ref|ZP_05105601.1| DNA gyrase, A subunit [Methylophaga thiooxidans DMS010]
 gi|224462321|gb|EEF78598.1| DNA gyrase, A subunit [Methylophaga thiooxydans DMS010]
          Length = 859

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/783 (31%), Positives = 383/783 (48%), Gaps = 48/783 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            + ++ +   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G  + + +KKS
Sbjct: 7   ELDSIGIETEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNSWNSPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE R
Sbjct: 67  ARIVGDVIGKYHPHGDTAVYDTMVRMAQPFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L  ++++ VDF   Y+E + EP V P+K P LL NG+SGIAVGMAT+IP HN
Sbjct: 127 MAKITHEMLADLEKETVDFIANYDESEHEPSVLPTKIPALLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  AA+A+IDNPEI I +L+E+I GPDFPT   I+     I E+Y  GRG   +RAR
Sbjct: 187 LTEVLNAAIAMIDNPEIGIPELMEHIPGPDFPTSA-IINGARGIAEAYATGRGRVHIRAR 245

Query: 256 WCVEEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +E     G   IVV E+PYQV K+RL+EKIAEL+  K+I  +  +RDES +D   ++ 
Sbjct: 246 ADIETNDATGQQSIVVNELPYQVNKARLLEKIAELVKEKKIDGITALRDESDKDGMRMVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + M+T F +NM  +     P+ + L  +L  ++ HRREV+ R
Sbjct: 306 VLRRGEVPEVVLNNLYQQTQMQTVFGINMVAIVD-GQPRTLNLKDVLAAFIRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----------------- 417
           RS F ++    R  IL+GL  A  NIDE+I +I+    P                     
Sbjct: 365 RSIFDLRKARDRAHILEGLATALANIDEVIELIKASPNPAEAKEALLSRGWASEMILEML 424

Query: 418 --------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+  Q  AIL++RL  L  LE+ +I  E   +L  
Sbjct: 425 GEAGAEASRPEDLEAEFGLVDKLYHLSPAQAQAILDMRLHRLTGLEQDKILQEYREVLDL 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++ ++L+        I  E+  +   +                        +  +   
Sbjct: 485 IGELLAILSDPDNLMAVIRDELVAINAEYGDERRTEILANHLDLTLEDLITEEEMVVTLS 544

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
                        ++ K      +A   K+ D ++    A+T D +L  S+ GK Y    
Sbjct: 545 HAGYAKTQQLDTYQAQKRGGKGKAATSMKDEDFIEHLFIANTHDTLLCFSSTGKVYWKKV 604

Query: 578 GNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
             L        G+ I  L+ L   + I        +++   + + ++ G        +  
Sbjct: 605 YELPQGGRTARGKPIVNLLPLEEGERINAVLSIREFEADKFIFMATASGTVKKTPLVDYS 664

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
                G   + +  ++++  V    G   + +     K++ F    +  M R  +GVR  
Sbjct: 665 RPRANGIIAVDLKDDDQLVDVAVTDGMSDIMLFSSTGKVIRFPEADVRSMGRVSRGVRGM 724

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              D      +     EG   + +    Y +  N     +  RGG G +  +   R+G  
Sbjct: 725 RIADNEKIISLIIAQEEGA-ILTATEFGYGKRTNLAEYRVQGRGGQGIISIQTSDRNGSV 783

Query: 751 LSS 753
           + +
Sbjct: 784 VGA 786



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 67/182 (36%), Gaps = 7/182 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  +  + A+  K+ D L           I+L S+ GK    P  ++ S       ++ +
Sbjct: 665 RPRANGIIAVDLKDDDQLVDVAVTDGMSDIMLFSSTGKVIRFPEADVRSMGRVSRGVRGM 724

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---- 649
             +  N+ I++  +      +L  +  G       +E     R G+  + + + ++    
Sbjct: 725 R-IADNEKIISLIIAQEEGAILTATEFGYGKRTNLAEYRVQGRGGQGIISIQTSDRNGSV 783

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICE 707
           +  V     D + ++     L+   +  +  + R  +GVRL +  K+  +  V      E
Sbjct: 784 VGAVQVCDEDQIMLITNGGTLVRTPVKDVSLVGRNTQGVRLINLSKNEKLVGVERVLEDE 843

Query: 708 GL 709
             
Sbjct: 844 ED 845


>gi|153806299|ref|ZP_01958967.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185]
 gi|149130976|gb|EDM22182.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185]
          Length = 856

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/758 (31%), Positives = 396/758 (52%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+ ++  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLVEVIEACDAYIDNPEITVEELMNFVKAPDFPTGGYIY-GVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E+G+    IV+TEIPY V K+ LI+ IA+L+  KRI  + +  DES  +   
Sbjct: 241 MRAKAEI-EIGQTHDKIVITEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTALQTSFGVNNVALVH-GRPKTLNLRDLIKYFIEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+LTE Q 
Sbjct: 359 VIRRTEFDLRKARERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ + ++    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDNVTAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + +   +L  + KG        +     + G   + +  ++ +  V    G
Sbjct: 599 RVKNLDDSEFINNHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  + + 
Sbjct: 659 NNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKDLETESVMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +           RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLV 756


>gi|28189077|dbj|BAC56225.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPDVTTREIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F  + M+T F     +     VP+++ +  IL+ ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKQTQMQTNFSF-NMLAIQNGVPKILSVRQILESYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ RF L+E Q 
Sbjct: 359 VTRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMERFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELVALIADLTDILAKPERVVLIIKEELEEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTEL--MVGEVLSLEDEDLIEEADVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L  
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           N+ I T         +   L   + +G       +E     + G   L +  ++++  V 
Sbjct: 592 NESIQTIINVTKDQTAEHYLFFATRQGIVKRANVNEFSNIRQNGLKALNLKDDDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  M R   GVR    ++G         + +    +
Sbjct: 652 LTDGQADVIMGTKFGYSVRFAETDVRNMGRTATGVRGIKLREGDHLVGATI-VSDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   Y +           RGG G +  K   ++G    
Sbjct: 711 VLSENGYGKRTPASEYPTKGRGGKGIITLKVADKNGPLAG 750



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 70/211 (33%), Gaps = 12/211 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E                E      + +G ++    +         L AL+ K+ D L 
Sbjct: 589 LEENESIQTIINVTKDQTAEHYLFFATRQGIVKRANVNEFSNIRQNGLKALNLKDDDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +      ++ +       ++  I L     +V A +     
Sbjct: 649 NVFLTDGQADVIMGTKFGYSVRFAETDVRNMGRTATGVRG-IKLREGDHLVGATIVSDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV+S  G       SE     R GK  + +   +K   +  +  V GD  + V+ +  
Sbjct: 708 EVLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKNGPLAGLTTVQGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
            ++  SI  I +  R   GV++    +    
Sbjct: 768 VIIRTSIANISQTGRSTMGVKVMRLDEEAKI 798


>gi|299769083|ref|YP_003731109.1| DNA gyrase, A subunit [Acinetobacter sp. DR1]
 gi|298699171|gb|ADI89736.1| DNA gyrase, A subunit [Acinetobacter sp. DR1]
          Length = 904

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/827 (30%), Positives = 408/827 (49%), Gaps = 95/827 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMTKLAHELLADLEKDTVDWEDNYDGSERIPQVLPTRVPNLLINGAAGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  DNP IS+E L+EYI GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYADNPNISVEGLMEYITGPDFPTGG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES +D  
Sbjct: 240 IRGKYHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F+ + +E  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVVVNNLFLNTQLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ F ++    R  IL+GL +A  NIDEII  I+    P                 
Sbjct: 359 VVTRRTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGV 418

Query: 420 -------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV AIL LRL  L  LE+ ++ 
Sbjct: 419 ISLLEKAGAISVRPDEIEGENPDRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN        I  E+ +V + +        RRT   E   +   
Sbjct: 479 AEYTEILGQIAELTAILNDFNLLMAVIREELAQVLQQYGD-----GRRTEIIE---SRID 530

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+         ++ +      SA   K+ D ++  + A   
Sbjct: 531 FSREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             +L  +  GK Y L    +       +   I  L+ L+ N+ +        +     + 
Sbjct: 591 ATVLCFTNVGKVYRLRVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLTEFPENHYVF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + ++ G    V+  +       G   ++++ E+ +  V    G+  + +     K + F+
Sbjct: 651 MATASGTVKRVDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFA 710

Query: 675 IDQIPEMSR-GKGVRLQS-------YKDGGISD--------------------VICFKIC 706
              +  M R  KGVR            +                         V    + 
Sbjct: 711 ETDVRSMGRTAKGVRGMRVSFASSTLSEEDAEVENDESDDNEDSADLNVVSRIVSLVVVP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 771 ETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 6/116 (5%)

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMK 651
           DLN    IV+  V   T ++L  S+ G       ++     R GK  + + + E   ++ 
Sbjct: 756 DLNVVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELV 815

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFK 704
             V +     + ++ +   L+     ++    R  +GVRL    ++  +  V+  +
Sbjct: 816 GAVSIDESKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871


>gi|150005805|ref|YP_001300549.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482]
 gi|294777724|ref|ZP_06743173.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510]
 gi|149934229|gb|ABR40927.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482]
 gi|294448424|gb|EFG16975.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510]
          Length = 855

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/759 (30%), Positives = 400/759 (52%), Gaps = 21/759 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L++Y+  PDFPTGG I      + ++Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E       I+V EIPY V K  LIE IA L+  K+I  +  + DES  +   
Sbjct: 241 MRAKAEI-ETHTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  +F ++ ++T F +N   L     P+++ L  +++ ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLFKMTALQTSFGVNNIALVH-GRPKMLNLKDLIRYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q 
Sbjct: 359 VIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELVEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           +       ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 ARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDSDDVVTAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  +  G        +     + G   + +  ++K+  V    G
Sbjct: 599 RVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNG 658

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
           D  + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  + + 
Sbjct: 659 DNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +  +        RGG G        ++GK ++
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 109/386 (28%), Gaps = 30/386 (7%)

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           Q+      + + +A+  E+L      +    D  VE+ +    A     EI+      + 
Sbjct: 436 QLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELVEVKEKYGDARR--SEIVYSSEEFNP 493

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                  +  +T + +  I    L   R      + S+      E         +     
Sbjct: 494 EDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTM 553

Query: 473 NQIAC-----EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                      ++  +         GR       +   D  T    +        + S+ 
Sbjct: 554 MFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHY 613

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL--STDGKAYTLPAGNLLSGRG 585
               +            +       +       D  ++    T+G    + A        
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 586 HGEA------------IQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEI 631
             E+              + +D +   +++            ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVV-KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KG 686
               R GK    ++  +K   +  +      + + ++ ++   +   + ++  M R  +G
Sbjct: 734 RKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLKVAEVRIMGRATQG 793

Query: 687 VRLQSY--KDGGISDVICFKICEGLT 710
           VRL +   ++  I  V      E +T
Sbjct: 794 VRLINLEKRNDQIGSVCKVTSEEEVT 819


>gi|205353389|ref|YP_002227190.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205273170|emb|CAR38131.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 878

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|91772466|ref|YP_565158.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242]
 gi|91711481|gb|ABE51408.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242]
          Length = 830

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/781 (33%), Positives = 423/781 (54%), Gaps = 45/781 (5%)

Query: 4   DNISNSN--------------TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDG 49
           DN++N                T   E +  + ++  ++  Y+ YA+S I  RA+PD RDG
Sbjct: 3   DNMNNEPGDVQPNDEPLDIKPTDTSERIVPILIQDEMKNSYIDYAMSVIVGRALPDARDG 62

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPVHRRI++AM E G+ +  A+KKSAR+VG+V+GK HPHGD +VYDSLVR+ Q F  RY
Sbjct: 63  LKPVHRRILYAMKEAGMTYDKAYKKSARVVGDVLGKYHPHGDTAVYDSLVRMVQEFSLRY 122

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           PLI GQGNFG+IDGDSAAA RYTE+RM +++  +L  +D++ V +R  Y+    EP V P
Sbjct: 123 PLIDGQGNFGSIDGDSAAAMRYTESRMDRISNEMLADIDKETVLYRPNYDGSLKEPTVLP 182

Query: 170 SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTG 229
           ++ PNLL NG++GIAVGMAT++  HN+ E+ +A L LI++PE  I  L+E + GPDFPTG
Sbjct: 183 ARLPNLLINGSTGIAVGMATNMAPHNLGEVIDATLMLIEDPETPISSLMEIVKGPDFPTG 242

Query: 230 GIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL 289
           G+I+   + I  +Y  GRG  ++RA   +EE+      IVV+E+PYQV KSRLIE IA L
Sbjct: 243 GVIL-GHQGIKSAYETGRGPIKIRAVTSIEEMKNDKKRIVVSELPYQVNKSRLIENIAAL 301

Query: 290 IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
           +  K+I  + D+RDES  D   V     R+ +P++++  ++  + M+T F +    L   
Sbjct: 302 VREKKIVGISDLRDESDRDGIRVSIELTRNTNPEVILNQLYKHTQMQTTFGIINLALVD- 360

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
            +P+ + L  +L+ +L HR +V+ +RS F M+  D +  ILKGL+IA  +IDE+IA+IR 
Sbjct: 361 NIPRELTLKELLQIYLEHRIDVILKRSMFDMRKADEKAHILKGLMIALDHIDEVIALIRG 420

Query: 410 ED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
            +   + K  +++RF L E Q  AIL++RL+ L  LE  +I+ E   L+   E +  ++ 
Sbjct: 421 SNAVDEAKEGLMTRFGLDEVQAKAILDMRLQKLTGLERQKIEDEHGELVKLIEDLKDIIE 480

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S +++++ I  E+  ++E F+      +RRT   E++ +      + +I  E + V I+N
Sbjct: 481 SDERKYSIIKEELHAIRERFAD-----KRRT---EITGSHVEFEDEDLIPVEEVIVTITN 532

Query: 527 RGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+ +              +  +  KE D ++    + T D ++  +  GK +     
Sbjct: 533 SGYIKRMPVDTYSQQHRGGKGVIGMETKEQDVVEDIFISSTHDYLMFFTNRGKVHWKKVY 592

Query: 579 --NLLSGRGHGEAIQLLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                S +  G+A+  L+DL  N+ +   +T   ++    L + +  G       S+   
Sbjct: 593 GLPEGSRQSKGKAVVNLLDLAENESVTATITVKEFEEDKFLFMATRMGTVKKTPLSDFSN 652

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             + G   LK+   +++  V    G   + +V  + K + F    +  M R  +GVR   
Sbjct: 653 VRKAGIIALKLDEGDELVNVALTDGSKEIMMVSRHGKAIRFCERDVRPMGRTARGVRGMR 712

Query: 692 YKDGGISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                I  V+   I +     +      Y +          KRGG G +      R+G  
Sbjct: 713 LTGDDI--VVSLDIVDLSTKLLTITENGYGKRTTFDEYRGMKRGGQGVITIVTSLRNGPV 770

Query: 751 L 751
           +
Sbjct: 771 I 771



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 5/120 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK----VSSEEK 649
           + L  +  +V+  + D + KLL ++  G        E     R G+  +     + +   
Sbjct: 711 MRLTGDDIVVSLDIVDLSTKLLTITENGYGKRTTFDEYRGMKRGGQGVITIVTSLRNGPV 770

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           + +      D V V       +   +  I    R  +GV++ + + G     +     E 
Sbjct: 771 INVKAVKEEDEVMVTSSEGIFIRIPVKDIRAQGRNTQGVKIMNVRPGDKVVGVARIKNEE 830


>gi|212693188|ref|ZP_03301316.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855]
 gi|237725403|ref|ZP_04555884.1| DNA gyrase A subunit [Bacteroides sp. D4]
 gi|212664293|gb|EEB24865.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855]
 gi|229436090|gb|EEO46167.1| DNA gyrase A subunit [Bacteroides dorei 5_1_36/D4]
          Length = 852

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/759 (30%), Positives = 400/759 (52%), Gaps = 21/759 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L++Y+  PDFPTGG I      + ++Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E       I+V EIPY V K  LIE IA L+  K+I  +  + DES  +   
Sbjct: 241 MRAKAEI-ETHTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  +F ++ ++T F +N   L     P+++ L  +++ ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLFKMTALQTSFGVNNIALVH-GRPKMLNLKDLIRYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q 
Sbjct: 359 VIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELIEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           +       ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 ARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDSDDVVTAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  +  G        +     + G   + +  ++K+  V    G
Sbjct: 599 RVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNG 658

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
           D  + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  + + 
Sbjct: 659 DNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +  +        RGG G        ++GK ++
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/392 (11%), Positives = 108/392 (27%), Gaps = 29/392 (7%)

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           Q+      + + +A+  E+L      +    D  +E+ +    A     EI+      + 
Sbjct: 436 QLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELIEVKEKYGDARR--SEIVYSSEEFNP 493

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                  +  +T + +  I    L   R      + S+      E         +     
Sbjct: 494 EDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTM 553

Query: 473 NQIAC-----EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                      ++  +         GR       +   D  T    +        + S+ 
Sbjct: 554 MFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHY 613

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL--STDGKAYTLPAGNLLSGRG 585
               +            +       +       D  ++    T+G    + A        
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 586 HGEA------------IQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEI 631
             E+              + +D +   +++            ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVV-KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KG 686
               R GK    ++  +K   +  +     G+ + ++ ++   +   + ++  M R  +G
Sbjct: 734 RKTNRGGKGVKTLNITDKTGKLVAIKSVTDGNDLMIINKSGITIRLKVAEVRIMGRATQG 793

Query: 687 VRLQSYKD-GGISDVICFKICEGLTWIDSAGR 717
           VRL + +        +C    E     D    
Sbjct: 794 VRLINLEKRNDQIGSVCKVTSEEEEITDENSN 825


>gi|313674616|ref|YP_004052612.1| DNA gyrase subunit a [Marivirga tractuosa DSM 4126]
 gi|312941314|gb|ADR20504.1| DNA gyrase subunit A [Marivirga tractuosa DSM 4126]
          Length = 839

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/763 (31%), Positives = 406/763 (53%), Gaps = 34/763 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E +  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRRI+  M E+GL     +K
Sbjct: 6   NEKIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMQELGLAHNRPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD +VYD++VR+AQP+  RY ++ GQGNFG+IDGDS AA RYTE
Sbjct: 66  KSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQMVDGQGNFGSIDGDSPAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++AE +L  ++++ VDF+  +++   EP V P+K PNLL NG SGIAVGMAT++  
Sbjct: 126 ARLKRIAEEMLTDINKNTVDFQFNFDDSLKEPTVLPAKVPNLLLNGASGIAVGMATNMAP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+     A IDN +I++ +L+E+I  PDFPTG   +   + +  ++  GRG   +R
Sbjct: 186 HNLTEVVNGINAYIDNNDITVAELMEHISAPDFPTGA-AIYGYQGVKAAFETGRGRIVMR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E +  G   ++VTEIPY V K+ +IEK A L+  K+I  + DIRDES  +   ++
Sbjct: 245 AKAEIEVLKSGRERVIVTEIPYLVNKANMIEKTAALVNEKKIEGISDIRDESDRNGLRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           +   +   P++++ +++  + ++T F +N   L     P+ + L  ++K ++ HR +V+ 
Sbjct: 305 YEIRKDAIPNVVLNNLYKYTQLQTSFSVNNVALVK-GRPETLNLKDMIKHYVEHRHDVIV 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ + ++   +R  IL+G LIA  N+DE+I +IR    P   +  ++ +F L+E Q  A
Sbjct: 364 RRTKYELEEAQKRAHILEGYLIALDNLDEVIKLIRESRDPEIARNGLMDKFKLSEIQAKA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I  E + +    E ++S+L     + N I  E++E+++ +    
Sbjct: 424 ILDMRLQRLTGLEREKIIQEYEEIKKLIEYLESVLADEGLRMNIIKDEMQEIQDRYGDE- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT       + +    + MI  E + + +S++G+I+              V    
Sbjct: 483 ----RRTEII---HSAEEFTDEDMIPNEDVVITLSHQGYIKRTLLNEYKTQGRGGVGSKG 535

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
              K+ D  ++   A T + +L+ +  GK Y +    L  G    +  AIQ LI++    
Sbjct: 536 AGSKDDDFTELLFVAKTHNYLLIFTELGKVYWIKVYRLPEGSKTSKGRAIQNLINIESED 595

Query: 601 DIVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +      +        +   L++ + KG                G   + ++  +++  
Sbjct: 596 SVRAVINVENLDDADYINNNFLVMCTEKGTIKKTTLEAYSRPRANGINAISINEGDRLLN 655

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGL 709
           V    GD ++ +   + + + F    +  M R   GVR  + KDG    V    I  E  
Sbjct: 656 VKLTNGDNNIIIAARSGRAIRFHESNVRPMGRTAAGVRGITLKDGKDIVVEMVAITRENA 715

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +  +     + KRGG G        ++G+ ++
Sbjct: 716 NLLVVSEKGYGKRSDIEDYRITKRGGKGVKTLNVTEKTGELVA 758



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 65/478 (13%), Positives = 150/478 (31%), Gaps = 28/478 (5%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           ++ I             R ++ +EE  + +  +    I         ++++ +LI   R 
Sbjct: 348 KDMIKHYVEHRHDVIVRRTKYELEEAQKRAHILEGYLIAL-----DNLDEVIKLIRESRD 402

Query: 296 P-----LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
           P      L D    S    + +L  + + L      + I    +++       +VL+   
Sbjct: 403 PEIARNGLMDKFKLSEIQAKAILDMRLQRLTGLEREKIIQEYEEIKKLIEYLESVLADEG 462

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
           +   +  D + +    +  E          +  D  +   + ++I   +   I   + NE
Sbjct: 463 LRMNIIKDEMQEIQDRYGDERRTEIIHSAEEFTDEDMIPNEDVVITLSHQGYIKRTLLNE 522

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            K +           ++ D    L   +                  +  ++     + K 
Sbjct: 523 YKTQGRGGVGSKGAGSKDDDFTELLFVAKTHNYLLIFTELGKVYWIKVYRLPEGSKTSKG 582

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                    R ++ + +  ++   R     E            ++        I      
Sbjct: 583 ---------RAIQNLINIESEDSVRAVINVENLDDADYINNNFLVMCTEKG-TIKKTTLE 632

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
              +  +  ++A+   EGD L      +  + I++ +  G+A      N+        A 
Sbjct: 633 AYSRPRANGINAISINEGDRLLNVKLTNGDNNIIIAARSGRAIRFHESNVRPMGRTA-AG 691

Query: 591 QLLIDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---- 644
              I L   +DIV     +      LLVVS KG     +  +     R GK    +    
Sbjct: 692 VRGITLKDGKDIVVEMVAITRENANLLVVSEKGYGKRSDIEDYRITKRGGKGVKTLNVTE 751

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
            + E + +   +  D + ++ ++   +  +++ +  M R  +GVRL    +      +
Sbjct: 752 KTGELVAIKEVIDSDDLMIINKSGITIRMAVESLRVMGRATQGVRLIKVNENDSISSV 809


>gi|163733835|ref|ZP_02141277.1| DNA topoisomerase IV subunit A [Roseobacter litoralis Och 149]
 gi|161392946|gb|EDQ17273.1| DNA topoisomerase IV subunit A [Roseobacter litoralis Och 149]
          Length = 768

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/770 (51%), Positives = 532/770 (69%), Gaps = 28/770 (3%)

Query: 6   ISNSNTLVEENVKAV--SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+ + + ++    +   LR AL ERYL YALSTI  RA+PD RDG KPVHRRI++AM E
Sbjct: 1   MSDQDDITDKEPADLSEPLRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT VAE +L G++E+AVDFR+ Y+   +EPVV P++FPNLLANG+SGI
Sbjct: 121 DNPAASRYTEARMTAVAEAMLDGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+CEA + LI  P+   + LL+Y+ GPDFPTGG+IVE  E+I ++Y
Sbjct: 181 AVGMATNIPPHNIAELCEACIHLIKTPDARDDTLLKYVPGPDFPTGGVIVEPPENIAQAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R G+GGFR+R RW VE++GRG W IVVTEIPYQVQKS+LIEKIAELI  K+IP+L D+RD
Sbjct: 241 RTGKGGFRLRCRWEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+DVR+++ P++RS+D D+LM  +F   D+E RF LNMNVL  G  P+V  +  +L+ 
Sbjct: 301 ESADDVRMIIEPRSRSVDADVLMGMLFRYCDLELRFSLNMNVLIDGVTPKVCSMKEVLQA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           +L HR+EVL RRS  R++ ID R+E+L+G +IA+LN+D +I IIR +D PK  +++    
Sbjct: 361 FLDHRQEVLQRRSQHRLEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMAEDWG 420

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 LTE Q +AILN+RLRSLR+LEE ++  E + L+AE+  
Sbjct: 421 KDHPRALNEADYVPPVPTDDVTLTEVQAEAILNMRLRSLRRLEEMELVREQEALMAERAA 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ LL S + QW  I  ++R  K+ F K  D G RRTTF E +   +    +AMI++EPI
Sbjct: 481 LEDLLESPELQWASITEQLRATKKQFGKDWDGGARRTTFSE-ATVIEDVPIEAMIDREPI 539

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV S  GW+R++  H      L FK+GD  +   HA TTDR+L+  ++G+ YT+ A +L
Sbjct: 540 TVVCSEMGWVRAMTGHIDLTRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASSL 599

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L+IDL +  +I+T   +    KLLV SS G+ F+V E++++A TR GK 
Sbjct: 600 PGGRGMGEPLRLMIDLPNEAEIITILTHAPNRKLLVASSAGDGFVVPEADVVAQTRTGKQ 659

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700
            L V  + +  +   V GD VAVVGENRK+L+F + ++PEM RGKGVRLQ YKDGG+SD 
Sbjct: 660 VLNVRGDTRAMICKAVQGDTVAVVGENRKVLVFPVGELPEMGRGKGVRLQKYKDGGLSDA 719

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             F   +GL+W D AGR   RSE +L  W GKR   G + P+GFPR  KF
Sbjct: 720 TTFMQADGLSWQDPAGR--TRSETELAEWTGKRATAGRMAPRGFPRDNKF 767


>gi|94266204|ref|ZP_01289913.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
 gi|93453211|gb|EAT03669.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
          Length = 850

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/778 (32%), Positives = 408/778 (52%), Gaps = 41/778 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I+++     E++  VS+   L + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+ 
Sbjct: 4   ITSNLPDSPEDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELN 63

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG++DGD 
Sbjct: 64  NYHNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSVDGDP 123

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARMT++ + ++  +D++ VDF  TY+   +EP+VFP++ PNLL NG++GIAV
Sbjct: 124 PAAMRYTEARMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSAGIAV 183

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+ +  + +I++P I++  L+E I GPDFPTGG  +  R  I E+Y  
Sbjct: 184 GMATNIPPHNLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGG-FICGRAGIREAYET 242

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R+R  +E+   G   IV+TEIPYQ  KS L+EKIA LI  KRI  + + RDES
Sbjct: 243 GRGSLLIRSRHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFRDES 302

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +    ++++  ++ ++ ++  F + M  +   R P+V+ L  IL+ ++
Sbjct: 303 DRHGMRIVIELKKDEIAEVVINQLYKMTPLQKSFGIIMLSIVNMR-PEVLNLRQILENFI 361

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            HR+ V++RR+++ ++  + +  +L+GL IA  N+DE++A+I+    P+       +RF 
Sbjct: 362 LHRKTVVYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINRFG 421

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q  AIL +RL  L  LE  +I  E D L+ E   +  +L         I  E   +
Sbjct: 422 LSAIQAQAILEMRLHRLTGLEREKIIEEYDALMKEIIWLRQVLGDESLVMKIIREEFEAI 481

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           +E +        RRT   +   A    L + MI +E + V +++ G+I+     +     
Sbjct: 482 RETYGD-----DRRTEIID---APDEILPEDMIAREEMVVTVTHAGYIKRNPVDTYRSQR 533

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                +      + D +     A T D +L  S  G+ +      +        G+A+  
Sbjct: 534 RGGKGIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFWRKVYEIPQAGRLARGKAVVN 593

Query: 593 LIDLNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           L++L   + +      DS          +L+ + KG       SE     ++GK  L + 
Sbjct: 594 LLELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKKTALSEFARPLKRGKIALTIR 653

Query: 646 SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG------- 696
            ++++      TGD  V ++      + F    I  M RG  GVR  +   G        
Sbjct: 654 EDDEILGASLTTGDNEVLLLSRRGMAVRFHEGDIRAMGRGASGVRGITLAAGDEQKGIPA 713

Query: 697 --ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +         + +  +   + +        L +RGG G +  K   R+G+ + 
Sbjct: 714 DELIGLQVLSGDPEASILVVSENGFGKRSKVGEYRLIRRGGKGVMAIKASERNGEVVG 771



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDH 660
               D    +LVVS  G     +  E     R GK  + +     + E + +      D 
Sbjct: 721 VLSGDPEASILVVSENGFGKRSKVGEYRLIRRGGKGVMAIKASERNGEVVGMSQVCDDDQ 780

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           V ++    +++   +  I  + R  +GVRL +  +      +
Sbjct: 781 VMMITNRGQIIRMPMQGIRVIGRSTQGVRLFNLDNEEKVVAL 822


>gi|258593677|emb|CBE70018.1| DNA gyrase, subunit A, type II topoisomerase [NC10 bacterium 'Dutch
           sediment']
          Length = 841

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/747 (31%), Positives = 390/747 (52%), Gaps = 13/747 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+   +   +   Y+ YA+S I  RA+PD+RDG KPVHRR+++AM E+GL  G ++KK+
Sbjct: 15  EVRPTDIHEEMRRSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGLSAGRSYKKA 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VYD++VRL Q F  RYPLI GQGNFG++DGD+ AA RYTE R
Sbjct: 75  ARIVGEVLGKYHPHGDTAVYDTIVRLVQDFSMRYPLIDGQGNFGSVDGDAPAAMRYTEVR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++A+ +L+ +D++ VD    ++E   EP + P+  PNLL NG+SGIAVGMAT+IP HN
Sbjct: 135 LAKIAQEMLRDIDKETVDLAPNFDETLEEPTLLPAALPNLLVNGSSGIAVGMATNIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A L L+++P+ + ++L+  + GPDFPTG  I   R  I ++Y  GRG  R+RA+
Sbjct: 195 LSETVDALLILLEDPDATPDRLMAVLPGPDFPTGAYIY-GRTGIRDAYLTGRGLIRMRAK 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE+       I+V+E+PYQV K++LIE+IAEL+  ++I  + D+RDES  +   ++  
Sbjct: 254 AFVEKSRGAREAIIVSELPYQVNKAKLIERIAELVRDRKIEGIADLRDESDREGMRIVIE 313

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +      ++  +F  + M++ F   M  L     P+V+ L   L  ++ HR+ ++ RR
Sbjct: 314 LKKEQPAPPILNQLFKHTAMQSTFGAIMLALV-EGQPKVLALKEALSHFIEHRKTIVIRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           + F ++  + R  IL+G  IA  ++D +IA+IR        +  ++ +F +++ Q  AIL
Sbjct: 373 TRFDLRKAEERAHILEGYRIALDHLDAVIALIRRSRSADDARAGLMEQFGMSQIQAQAIL 432

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            LRL+ L +LE  +I+ E    +A  E+  ++L S       I  E+  +KE +      
Sbjct: 433 ELRLQRLTQLERQKIQDEYSETIAAIERYRAILASEALVCQIIKEELLAIKETYGDLRRT 492

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                T         A  +  +       +  SN    RS +     ++ +  KE D ++
Sbjct: 493 EILEETTEIELEDMLADEEMVIPITHGGYIKRSNLNAYRSQRRGGKGMTGMATKEEDYVE 552

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A T   +LL +  GK + L    L        G+A+   + L   + I T      
Sbjct: 553 HLFVATTHSHLLLFTNQGKVHWLKVYGLPQLGHAAKGKALANFLQLGVGEQITTVIPIRQ 612

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           ++    LL+ + +G     E +        G   + +   +++  V    GD  + +   
Sbjct: 613 FEVDRYLLMATRRGIVKKTELNAYGNPRAGGIIAITLDGGDELIAVRLTKGDDEILLGTR 672

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
               + F  D++    R  +GV+  S  +GG   V    + +G   +    R Y +  + 
Sbjct: 673 QGMAIRFKEDEVRSAGRAARGVKGISL-EGGDEVVGAEVVAQGAAVLTVTERGYGKRTDP 731

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               L  RGG G +  +   R+G  + 
Sbjct: 732 EEYRLQSRGGKGIINIRATDRNGPAVG 758



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 6/178 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            + A+    GD L         D ILL +  G A      + +   G        I L  
Sbjct: 643 GIIAITLDGGDELIAVRLTKGDDEILLGTRQGMAIRFK-EDEVRSAGRAARGVKGISLEG 701

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVK 655
             ++V A V      +L V+ +G     +  E    +R GK  + + + ++      V+ 
Sbjct: 702 GDEVVGAEVVAQGAAVLTVTERGYGKRTDPEEYRLQSRGGKGIINIRATDRNGPAVGVML 761

Query: 656 V-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTW 711
           V +GD + ++ +  ++    +D+I  + R  +GVRLQ  +       +   + +    
Sbjct: 762 VQSGDQIMMISQEGRITRMRVDEISLIGRATQGVRLQGLEPTDRVAAVTRLVSDDEGV 819


>gi|319407186|emb|CBI80825.1| topoisomerase IV subunit A [Bartonella sp. 1-1C]
          Length = 749

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/747 (62%), Positives = 594/747 (79%), Gaps = 2/747 (0%)

Query: 6   ISNS--NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+    +  +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  
Sbjct: 1   MSDEMIRSFDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRL 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L+ G A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDG
Sbjct: 61  LRLNPGQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GI
Sbjct: 121 DNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSAGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP HNV E+C+AAL LI NP    + L ++++GPDFPTGGI+VE ++SI +SY
Sbjct: 181 AVGMATSIPPHNVAELCDAALYLIANPHADHKDLSQFVLGPDFPTGGILVEPKKSIEDSY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+R+RW  EE  RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI D
Sbjct: 241 RTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAED+RIVL PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP V+ L   L++
Sbjct: 301 ESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQ 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL HR+EVL RRS++R+  ID R+EIL+G LIAYLN++E+I IIR  D+PK  ++ RF L
Sbjct: 361 WLQHRKEVLIRRSNYRLNEIDCRLEILQGYLIAYLNLNEVIQIIREHDEPKKELILRFKL 420

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TENQ ++ILN+RLRSLRKLEE+Q++ E D+L  EKEK+ SLLNS  +QW  IA EI  V+
Sbjct: 421 TENQAESILNMRLRSLRKLEEFQLRKEFDSLKIEKEKLQSLLNSNIKQWKVIAEEITRVR 480

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           +IF   T LG+RRTTF +  R D+  + QAMIEKEP+T+VIS +GW+R+LK H  D   L
Sbjct: 481 KIFGPETFLGKRRTTFEDAPRHDENDIHQAMIEKEPVTIVISEKGWVRALKGHLNDYKTL 540

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FKEGD LK+A  A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D+N+  DI+
Sbjct: 541 SFKEGDGLKLAFPAFTTDKIIVISTGGKFFTISANTLPGGRGHGEPIRILVDMNNEHDIL 600

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           TAFV++   K L++SS GN FIV E++IIANTRKGK  + V S + +KL + V GD++A+
Sbjct: 601 TAFVHNVQGKRLLISSYGNGFIVSETDIIANTRKGKQVMNVKSLDSLKLCIPVEGDYIAI 660

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           VGENRK+LIFSI+QIPEMSRGKGVRLQ YKDGGI D   F + EGL+W D+A RS+NR  
Sbjct: 661 VGENRKMLIFSIEQIPEMSRGKGVRLQRYKDGGIVDAKTFTLSEGLSWQDTAERSFNRQA 720

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           N+L+ W+G R G G LVPKGFP+SGKF
Sbjct: 721 NELVEWMGTRAGTGRLVPKGFPKSGKF 747


>gi|78047228|ref|YP_363403.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78035658|emb|CAJ23349.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 900

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/819 (31%), Positives = 386/819 (47%), Gaps = 80/819 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     A+
Sbjct: 4   TAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYT
Sbjct: 64  FKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP
Sbjct: 124 ESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALID PE+ +E L+EYI GPDFPT G I+     I   YR GRG  R+
Sbjct: 184 PHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAG-IINGTAGIAAGYRTGRGRVRI 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  VE    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME  F +NM  L     PQ+M L  +L+ ++ HRREV+
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALID-GRPQLMNLKQMLEAFIRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P+                  
Sbjct: 362 TRRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGA 421

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + L+E Q   IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
              E +  +L +       I  E+  ++E +        R +          A     + 
Sbjct: 482 GVIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ +      SA   KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
           P   L        G  I   I L   + +        Y     +   +  G       SE
Sbjct: 602 PVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    GD  V +   N K + F    +  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVR 721

Query: 689 LQSYKDGGIS-------------------------------DVICFKICEG---LTWIDS 714
                 G                                  +    ++ +       + +
Sbjct: 722 GIRLTKGEEVVSLIVAERAGGVEEEIEGEEVDDVVEATDGGESAVIEVADDGNVAYILTA 781

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+GK + +
Sbjct: 782 TENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 8/113 (7%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGEN 667
             +L  +  G       +E     R  +  + +     + + ++ V+    D V ++ + 
Sbjct: 776 AYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGATDEVLLISDG 835

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC---FKICEGLTWIDSAG 716
             L+     +I  + R  +GV L     G     +      + E    +D AG
Sbjct: 836 GTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVDEVVDEAG 888


>gi|29141106|ref|NP_804448.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|29136732|gb|AAO68297.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 878

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/801 (33%), Positives = 406/801 (50%), Gaps = 68/801 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F        RRT   E++    
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSA 526

Query: 508 ATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S++G+          + +      SA   KE D +   L A+T
Sbjct: 527 DINIEDLISQENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANT 586

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        Y+    +
Sbjct: 587 HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNV 646

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
            + ++ G       +E       G   + ++  +++  V   +G D V +     K++ F
Sbjct: 647 FMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRF 706

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
             D +  M R   GVR            +     EG   +      Y +           
Sbjct: 707 KEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKS 765

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           R   G +  K   R+G  + +
Sbjct: 766 RATQGVISIKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|326624091|gb|EGE30436.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 878

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|295084194|emb|CBK65717.1| DNA gyrase subunit A [Bacteroides xylanisolvens XB1A]
          Length = 858

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/758 (31%), Positives = 397/758 (52%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+E++  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PPHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGG-FIYGVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D   
Sbjct: 241 MRAKAEI-ESGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALVH-GRPKTLNLRDLIKYFIEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRQVMKDELLEVKTKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ + ++    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDNVTAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  + KG        +     + G   + +  ++ +  V    G
Sbjct: 599 RVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F    +  M R   GVR  +  + G   +  +IC K  +  + + 
Sbjct: 659 NNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKDLKTESVMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +           RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLV 756


>gi|21231028|ref|NP_636945.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768967|ref|YP_243729.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188992081|ref|YP_001904091.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21112653|gb|AAM40869.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574299|gb|AAY49709.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733841|emb|CAP52047.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris]
          Length = 899

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/819 (31%), Positives = 386/819 (47%), Gaps = 80/819 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G     A+
Sbjct: 4   TAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYT
Sbjct: 64  FKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLMVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM+++A  ++  ++++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP
Sbjct: 124 ESRMSRLAHELMADIEKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALID PE+ IE L+EYI GPDFPT G I+     I   YR GRG  R+
Sbjct: 184 PHNLTEAINACIALIDTPELDIEGLMEYIPGPDFPTAG-IINGTAGIAAGYRTGRGRVRI 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  VE    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME+ F +NM  L     PQ+M L  +L+ ++ HRREV+
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVD-GRPQLMNLKQMLEAFIRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P+                  
Sbjct: 362 TRRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGA 421

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + L+E Q   IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLGAAGAEASKPEDLAPGVGLSNGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
              + +  +L +       I  E+  ++E +  +     R +          A     + 
Sbjct: 482 EVIQGLIRILENPDVLLQVIRDELINIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ +      SA   KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
           P   L        G  I   I L   + +        Y     +   +  G       SE
Sbjct: 602 PVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    GD  V +   N K + F    +  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVR 721

Query: 689 LQSYKDGGISDVICFKICEG----------------------------------LTWIDS 714
                 G     +      G                                     + +
Sbjct: 722 GIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTA 781

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+GK + +
Sbjct: 782 TENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGEN 667
             +L  +  G       +E     R  +  + +     + + ++ V+  + D V ++ + 
Sbjct: 776 AYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVLLISDG 835

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
             L+     +I  + R  +GV L     G     +
Sbjct: 836 GTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAV 870


>gi|255693872|ref|ZP_05417547.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565]
 gi|260620314|gb|EEX43185.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565]
          Length = 859

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/758 (31%), Positives = 398/758 (52%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYLAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A IDNPEI++E+L+E++  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIDACDAYIDNPEITVEELMEFVKAPDFPTGGYIY-GVSGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  + E G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D   
Sbjct: 241 MRARAEI-ESGQAHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HRREV
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTALQTSFGVNNVALIH-GRPKTLNLRDLIKYFIEHRREV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+LTE Q 
Sbjct: 359 VIRRTQFELRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ + ++    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDNVTAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  + KG        +     + G   + +  ++ +  V    G
Sbjct: 599 RVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  + + 
Sbjct: 659 NNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKDLETESVMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +           RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLV 756


>gi|299145617|ref|ZP_07038685.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23]
 gi|298516108|gb|EFI39989.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23]
          Length = 858

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/758 (31%), Positives = 396/758 (52%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+E++  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIY-GVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D   
Sbjct: 241 MRAKAEI-ESGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALVH-GRPKTLNLRDLIKYFIEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +     RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIERFNLTEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRRVMKEELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 VRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ + ++    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDNVTAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  + KG        +     + G   + +  ++ +  V    G
Sbjct: 599 RVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  + + 
Sbjct: 659 NNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKDLETESVMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +           RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLV 756


>gi|260170231|ref|ZP_05756643.1| DNA gyrase subunit A [Bacteroides sp. D2]
 gi|315918594|ref|ZP_07914834.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692469|gb|EFS29304.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 858

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/758 (31%), Positives = 396/758 (52%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+E++  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIY-GVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D   
Sbjct: 241 MRAKAEI-ESGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALVH-GRPKTLNLRDLIKYFIEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +     RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIERFNLTEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRRVMKEELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 VRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ + ++    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDNVTAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  + KG        +     + G   + +  ++ +  V    G
Sbjct: 599 RVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  + + 
Sbjct: 659 NNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKDLETESVMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +           RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLV 756


>gi|145588680|ref|YP_001155277.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047086|gb|ABP33713.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 900

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/809 (30%), Positives = 393/809 (48%), Gaps = 76/809 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLRK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHDLLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATNIPPHNLDE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A L ++ NPE +I++L+E I  PDFPT G I+   + + E YR GRG   +RA+   
Sbjct: 190 VISACLHVLHNPECTIDELIEIIPAPDFPTAG-IIYGVQGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    I+V E+PYQV K  L+E+IAEL+  K++  + D+RDES +    V+    
Sbjct: 249 EDLDKGARQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDNFGMNMVALVD-NQPRLLNLKQMLEYFLQHRREVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410
           F ++    R  +L+GL +A  NIDE IAII+                             
Sbjct: 368 FELRKARDRGHVLEGLAVALANIDEFIAIIKAAANPVVAKQELMGKAWDSSMVREMLARA 427

Query: 411 -----------------DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                             +        + L+++Q   IL +RL+ L  LE+ +I +E   
Sbjct: 428 ETDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKIVNEYKE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC----EVSRADKAT 509
           +++E   +  LL   ++    I  E++EV+  F  +     RR+       E+   D  T
Sbjct: 488 VMSEISDLLDLLAKPERVTQVIETELKEVQAEFGVAGGDTGRRSFIEMNATELFTEDLIT 547

Query: 510 LQQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
            Q  ++       + S         K       A   K  D +     A+T D IL  S 
Sbjct: 548 PQDMVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIDTLFVANTHDIILCFSD 607

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    +        G+ I  +  L   + I        Y     + + +S G  
Sbjct: 608 RGRMYWLKVWEVPQGSRTSRGKPIVNMFPLIEGEKITVILPIKGYQDDHYVFMATSLGTV 667

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMS 682
                S+     + G   + ++  + +       G H V +  +  K + F  + +  M 
Sbjct: 668 KKTRLSDFSNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAGKAVRFDENDVRPMG 727

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG-----------------LTWIDSAGRSYNRSEN 724
           R  +GVR  +  DG     +     E                   + + +    Y +   
Sbjct: 728 RTARGVRGMNLGDGHQVIAMLVAPAEAAEGAEAAVVDANGAAIPSSVLTATENGYGKRTP 787

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   RG  G +  +   R+GK +++
Sbjct: 788 IAEYTRHGRGTKGMIAIQTTERNGKVVAA 816



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGEN 667
             +L  +  G       +E   + R  K  + +     + + +   +    D + ++   
Sbjct: 772 SSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTTERNGKVVAAALVSPEDQIMLITTG 831

Query: 668 RKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
             L+   + +I EM R  +GV L +  +G
Sbjct: 832 GILVRTRVSEIREMGRATQGVTLINVDEG 860



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G     P           + +  +     N  +V A +     +++++++ G     
Sbjct: 778 TENGYGKRTPIAEYTRHGRGTKGMIAIQTTERNGKVVAAALVSPEDQIMLITTGGILVRT 837

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
             SEI    R   G T + V    ++  + ++    
Sbjct: 838 RVSEIREMGRATQGVTLINVDEGTRLSGLQRIAESD 873


>gi|189502213|ref|YP_001957930.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497654|gb|ACE06201.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 816

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/757 (32%), Positives = 393/757 (51%), Gaps = 20/757 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +EN+  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+     F
Sbjct: 5   PQENIIPINIVDEMRTAYIDYSMSVIIARALPDVRDGLKPVHRRVLYGMHELGVTHNKPF 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RYPL+ GQGNFG+IDGD  AA RYT
Sbjct: 65  KKSARIVGEVLGKYHPHGDASVYDAMVRMAQDWSLRYPLVQGQGNFGSIDGDGPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ + AE +L  +++D VDF+  +++   EP V P+K P LL NG+SGIAVGMAT++P
Sbjct: 125 EARLARTAEEMLADLNKDTVDFQTNFDDSLQEPTVLPAKLPQLLINGSSGIAVGMATNMP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ E  +A I+N +I+IE+L++YI GPDFPT G I+   + I E+YR GRG   +
Sbjct: 185 PHNLTEVIEGIIAYINNNDITIEELMQYIQGPDFPTRG-IIYGSQGIREAYRTGRGKVLM 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E    G   I+VTEIPY V K+ LIE+ A+L+  K+I  + DIRDES +D   +
Sbjct: 244 RAKATIETTPTGKEQIIVTEIPYMVNKAMLIERTAQLVNEKKIEGISDIRDESDKDGLRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           ++   R     +++ +++  + ++  F +N   L     PQ + L  +++ ++AHR EVL
Sbjct: 304 VYDLKRDAIGQVVLNNLYKNTSLQFSFGVNNVALV-AGKPQTLNLKELIQHFVAHRHEVL 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
            R++ + +    +R+ IL+G LIA  N+D II++IR+    +         + L+E Q  
Sbjct: 363 LRKTKYELNQAQKRLHILEGYLIALDNLDAIISLIRSSRDAEAAKQGLIQTYQLSEQQAK 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL+ L  +E  +I  E        E++  +L+    Q   I  E+ E+KE +  +
Sbjct: 423 AILELRLQRLTGMERDKILQEHRETTQLIERLQLILSDRDLQMTLIKNELAELKEQYGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   T         A     +   +   +  +     R      V   +   KE D
Sbjct: 483 RRTVIEHNTDDITLEDMIAEEDMVITISQQGYIKRTPLSEYRIQNRGGVGARSTATKEDD 542

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF- 606
            +     A T   +L+ +T GK +      L  G    +  AIQ LI +     + +   
Sbjct: 543 YITHLFVASTHQYLLIFTTLGKVFWKKVYTLPEGSKSSKGRAIQNLIPIAPGDQVQSVIK 602

Query: 607 -------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   Y ++  +L+ + +G          I     G   +K++  +++  V    GD
Sbjct: 603 VRNLKDETYVNSRYILMCTVQGVIKKTPLDAYINPRTNGIQAIKINEGDRLLTVKLTKGD 662

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGLTWIDSA 715
            HV +   + + + F    +  M R   GVR  +    +  +  ++     + +  +  A
Sbjct: 663 NHVIIALRSGRAIHFHERDVRSMGRVSTGVRGITLAGPEDRVVGMVTVYKPD-IELLVVA 721

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +   +        + KRGG G        ++G   +
Sbjct: 722 EKGVGKRSAVADYRITKRGGKGVKTLNITEKTGALAA 758



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 7/182 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  + A+   EGD L         + +++    G+A      ++ S       ++ +
Sbjct: 636 NPRTNGIQAIKINEGDRLLTVKLTKGDNHVIIALRSGRAIHFHERDVRSMGRVSTGVRGI 695

Query: 594 IDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEE 648
                   +V    VY    +LLVV+ KG       ++     R GK    +     +  
Sbjct: 696 TLAGPEDRVVGMVTVYKPDIELLVVAEKGVGKRSAVADYRITKRGGKGVKTLNITEKTGA 755

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
              +      D + ++  +   +   +  +  M R  +GVRL    +G     I  KI E
Sbjct: 756 LAAIEAVTDADELLIINTSGIAIRIEVSTLRIMGRNTQGVRLIRLNEGDAITSIA-KITE 814

Query: 708 GL 709
            L
Sbjct: 815 NL 816


>gi|307545311|ref|YP_003897790.1| DNA gyrase subunit A [Halomonas elongata DSM 2581]
 gi|307217335|emb|CBV42605.1| DNA gyrase subunit A [Halomonas elongata DSM 2581]
          Length = 899

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/814 (32%), Positives = 414/814 (50%), Gaps = 86/814 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKS
Sbjct: 7   EILPVNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG+IDGD+AAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRHVLVDGQGNFGSIDGDNAAAMRYTEVR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  +++D VD+ D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MARLAHELLADLEKDTVDWVDNYDGTERIPDVLPTKLPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALID+  +S++ L+EYI GPDFPTGG I+  R  I+E+YR GRG   VRAR
Sbjct: 187 MVEVIDGCLALIDDYTLSVDDLMEYIPGPDFPTGG-IINGRAGILEAYRTGRGRIYVRAR 245

Query: 256 WCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +  +   G   I+VTE+PYQV K+RLIEKIAEL+  KRI  + ++RDES ++   V+ 
Sbjct: 246 HTIEHDEKTGRDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLRVVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ ++F  + ++  F +NM  L  G  P+ + +  +L+ ++ HRREV+ R
Sbjct: 306 EVKRGESGEVVVNNLFAQTQLQNVFGINMVALD-GGEPRTLNIKEVLEAFIRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418
           R+ F ++    R  IL+GL +A  NIDE+I +I+                          
Sbjct: 365 RTLFELKKARERGHILEGLTVAISNIDEVIELIKASPSANEAKEKLLERNWAPGQVTGML 424

Query: 419 -----------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + L+  Q  AIL LRL  L  LE  ++  E   +L
Sbjct: 425 ERAGATSCKPEDLEEGFGLDTAGKEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLGIL 484

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++ ++L S  +    I  E+  V++ F +      RRT   E+  +      + +I
Sbjct: 485 EKIAELTAILASADRLLEVIREELTAVRDQFGE-----TRRT---EIQASHLDLSIEDLI 536

Query: 516 EKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E + V +S  G+         ++ +      SA   K+ D ++  L A T D +LL S
Sbjct: 537 AEEDMVVTVSRSGYAKTQPLSDYQAQRRGGRGKSATSMKDEDVIEHLLVASTHDTVLLFS 596

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
             GK Y L    +   S    G+ +  L+ L  ++ I        YD    +   ++KG 
Sbjct: 597 NRGKVYWLKVYEMPAASRGSRGKPLVNLLPLEEDEAINAILPVHDYDPDSYIFFATAKGT 656

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 ++       G   + +   +++      +G DH  ++  N K + F    +  M
Sbjct: 657 VKRTSLAQFSRPRSVGLIAIDLEEGDRLVGAAITSGSDHAMLLSSNGKAIRFDESNVRAM 716

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICE---------------------GLTWIDSAGRSY 719
            R  +GVR     DG     +     +                      +  + ++   Y
Sbjct: 717 GRTARGVRGMRLLDGAEVISLIIPRSQLIDAEDQDDAAADSAEPLDAGQIYILTASENGY 776

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +        L  RGG G +  +   R+G  +++
Sbjct: 777 GKRTRLEEFPLRGRGGQGVIAMQTSERNGSLVAA 810


>gi|237709930|ref|ZP_04540411.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA]
 gi|229456023|gb|EEO61744.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA]
          Length = 852

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/759 (30%), Positives = 400/759 (52%), Gaps = 21/759 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ EI +A +A IDN +I IE L++Y+  PDFPTGG I      + ++Y  GRG   
Sbjct: 182 PTHNLSEIIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E       I+V EIPY V K  LIE IA L+  K+I  +  + DES  +   
Sbjct: 241 MRAKAEI-ETHTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  +F ++ ++T F +N   L     P+++ L  +++ ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLFKMTALQTSFGVNNIALVH-GRPKMLNLKDLIRYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q 
Sbjct: 359 VIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELIEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           +       ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 ARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDSDDVVTAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  +  G        +     + G   + +  ++K+  V    G
Sbjct: 599 RVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNG 658

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
           D  + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  + + 
Sbjct: 659 DNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +  +        RGG G        ++GK ++
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757



 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/392 (11%), Positives = 108/392 (27%), Gaps = 29/392 (7%)

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           Q+      + + +A+  E+L      +    D  +E+ +    A     EI+      + 
Sbjct: 436 QLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELIEVKEKYGDARR--SEIVYSSEEFNP 493

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                  +  +T + +  I    L   R      + S+      E         +     
Sbjct: 494 EDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTM 553

Query: 473 NQIAC-----EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                      ++  +         GR       +   D  T    +        + S+ 
Sbjct: 554 MFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHY 613

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL--STDGKAYTLPAGNLLSGRG 585
               +            +       +       D  ++    T+G    + A        
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 586 HGEA------------IQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEI 631
             E+              + +D +   +++            ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVV-KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KG 686
               R GK    ++  +K   +  +     G+ + ++ ++   +   + ++  M R  +G
Sbjct: 734 RKTNRGGKGVKTLNITDKTGKLVAIKSVTDGNDLMIINKSGITIRLKVAEVRIMGRATQG 793

Query: 687 VRLQSYKD-GGISDVICFKICEGLTWIDSAGR 717
           VRL + +        +C    E     D    
Sbjct: 794 VRLINLEKRNDQIGSVCKVTSEEEEITDENSN 825


>gi|160882761|ref|ZP_02063764.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483]
 gi|237720668|ref|ZP_04551149.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4]
 gi|293369438|ref|ZP_06616022.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f]
 gi|156111785|gb|EDO13530.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483]
 gi|229449503|gb|EEO55294.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4]
 gi|292635478|gb|EFF53986.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f]
          Length = 858

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/758 (31%), Positives = 396/758 (52%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+E++  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIY-GVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D   
Sbjct: 241 MRAKAEI-ESGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALVH-GRPKTLNLRDLIKYFIEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +     RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIERFNLTEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRRVMKEELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 VRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ + ++    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDNVTAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  + KG        +     + G   + +  ++ +  V    G
Sbjct: 599 RVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  + + 
Sbjct: 659 NNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKDLETESVMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +           RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLV 756


>gi|260891936|ref|YP_003238033.1| DNA gyrase, A subunit [Ammonifex degensii KC4]
 gi|260864077|gb|ACX51183.1| DNA gyrase, A subunit [Ammonifex degensii KC4]
          Length = 802

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/747 (33%), Positives = 394/747 (52%), Gaps = 14/747 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  + +   + + YL YA+S I  RA+PD+RDG KPVHRRI++AM  +G+      +KS
Sbjct: 3   KVIPIEITEEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHTLGMTPDRPHRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVGEV+ + HPHGD  VYD+LVRLAQ F  RYPL+ G GNFG+IDGD+ AA RYTEAR
Sbjct: 63  AYIVGEVLARYHPHGDAPVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++ A  +L+ +++D VDF   Y+    EP V PS+ PNLL NG++GIAVGMAT+IP HN
Sbjct: 123 LSRYALEMLRDINKDTVDFVPNYDGTTQEPAVLPSRLPNLLVNGSAGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALIDNP++S+E+L+ Y+ GPDFPTGGII+  RE I  +Y  GRGG  VR +
Sbjct: 183 LGEVIDGLLALIDNPDLSLEELMRYVPGPDFPTGGIIL-GREGIRTAYATGRGGIVVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             + E       IV+TEIPYQV K+RL+E+IAEL+  KR+  + D+RDES      V+  
Sbjct: 242 ATI-ERKGNRNLIVITEIPYQVNKARLLERIAELVKEKRLEGVADLRDESDRSGIRVVVE 300

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  DP +++  ++  + +E  F + M  L     P+V+ L  +++ +L H++EV+ RR
Sbjct: 301 LKRDADPQVILNRLYKHTQLEETFGVIMLALV-NGQPEVLSLKEMMRHYLNHQKEVVVRR 359

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAIL 432
             + ++    R+E+++GL++A  NID ++ +I+           ++S F LTE Q  AIL
Sbjct: 360 CQYELREAQLRLEVVEGLVVAVDNIDAVVQLIKTAPDVPTAKERLISTFGLTEKQAQAIL 419

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  ++ +EL  L  +   ++ +L    + W  +  E++ +KE F+     
Sbjct: 420 DMRLQRLTALEREKLVAELKELKEKIAYLEGVLADEAKVWGIVKEELKALKERFADPRRT 479

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                             Q  ++      +   ++   RS       ++ L  K+GD ++
Sbjct: 480 LIVDEEVTYRPEDLIPAEQVVVLLSHQGYIKRQDKSLYRSQHRGGRGVTGLKLKDGDFVR 539

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D +L  ++ G+ + L    +        G A+  L+ L+  + +        
Sbjct: 540 HLYLANTHDYLLFFTSAGRVHRLKVYEIPEAERAGRGTALPNLLQLSPEEQVTAIIPVAD 599

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV-KVTGDHVAVVGE 666
           +     +L+V+ +G    +   E+    R G   + +   +++         + V +V E
Sbjct: 600 FSEDKYVLLVTRQGVVKKLPLGELANIRRVGLNAISLDPGDELVAAALPGPEEEVLLVTE 659

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F   ++  M R  +GVR    + G     +      G   +      Y +    
Sbjct: 660 GGKAIRFRAAEVRPMGRAARGVRGMKLRPGDRVAGLAVLDGAGE-VLLVTAGGYGKRVKT 718

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               L  RGG+G         SG  + 
Sbjct: 719 ADFPLQGRGGMGVTALAVSKTSGPVVG 745



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 62/174 (35%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
               V L+A+    GD L  A      + +LL++  GKA    A  +         ++ +
Sbjct: 625 NIRRVGLNAISLDPGDELVAAALPGPEEEVLLVTEGGKAIRFRAAEVRPMGRAARGVRGM 684

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKM 650
             L     +    V D   ++L+V++ G    V+ ++     R G     +    +   +
Sbjct: 685 -KLRPGDRVAGLAVLDGAGEVLLVTAGGYGKRVKTADFPLQGRGGMGVTALAVSKTSGPV 743

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             V  V   + + +      L    + ++P M R  +GV L   +       + 
Sbjct: 744 VGVEVVRDEEEILLASAAGWLTRLKVKEVPVMGRQARGVVLMRLQPEDRLVALA 797


>gi|332798031|ref|YP_004459530.1| DNA gyrase subunit A [Tepidanaerobacter sp. Re1]
 gi|332695766|gb|AEE90223.1| DNA gyrase, A subunit [Tepidanaerobacter sp. Re1]
          Length = 807

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/750 (31%), Positives = 391/750 (52%), Gaps = 13/750 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +  +  V +   +++ Y+ Y++S I  RA+PD+RDG KP+HRRI++AMS++ L      
Sbjct: 4   PKGKIIPVKIEEEMKKSYIDYSMSVIVGRALPDVRDGLKPIHRRILYAMSQLSLTPDKPH 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA IVGEV+G  HPHGD ++YD++VRLAQ F  RY L+ G GNFG+IDGD AAA RYT
Sbjct: 64  RKSATIVGEVMGNYHPHGDAAIYDAMVRLAQDFSTRYLLVDGHGNFGSIDGDPAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARMT+++  +L  +++D VDF   Y+E   EP V P++FPNLL NG+SGIAVGMAT+IP
Sbjct: 124 EARMTRISLEMLSDLNKDTVDFIPNYDESLDEPSVLPARFPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  + +IDNP++++E+L++ I GPDFPTGG I++    I + Y  GRG   +
Sbjct: 184 PHNLSEVIDGVIMMIDNPDVTVEELMQVIKGPDFPTGG-IIKGYSGIKDMYTTGRGSVVM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +      I+VTEIPY V K+R++EKIAEL+  K+I  + D+RDES      +
Sbjct: 243 RAKATIEAMDATRHRIIVTEIPYMVNKARMVEKIAELVRDKKIEGISDLRDESDRKGIRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +P +++  ++  + M++ F   M  L   + P+V+ L  ++  +L H+++V+
Sbjct: 303 VMDLKRDANPHIILNQLYKHTQMQSTFGAIMLALVDNK-PRVLNLREMIYYYLEHQKDVI 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
            RR+ F +     R+ IL+GL IA  +IDE+IAIIR               F L+E Q  
Sbjct: 362 VRRTKFDLAKAQERIHILEGLKIALDHIDEVIAIIRGSKDDVTARDALIKNFGLSEKQAQ 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL++RL+ L  LE  +I  E   LL + +    +L+  K   + I  E+ ++K+ +   
Sbjct: 422 VILDMRLKRLTALEREKIDEEYAELLKKIDYYQKILSDEKIVLSIIKEELIQIKQKYGDE 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                                   + +     V        RS +     ++ +  +E D
Sbjct: 482 RRTHITHDEGDFDIEDLIVEEDIVITQTHFGYVKRQPISAYRSQRRGGRGVTGITTREED 541

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV 607
            ++      T   ++  +  G  Y L A  +        G AI  L+ L  ++ + T   
Sbjct: 542 FVEHIFVGTTHHVVMFFTNKGNVYKLKAYEIPDTSRTARGTAIVNLLPLKPDERVNTMIT 601

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAV 663
              +D    L+  +  G       SE  ++ R G   + +  ++++  V  V   + + +
Sbjct: 602 IKDFDEARYLIFATKNGIVKKTLLSEYASSRRTGLIAITLKDDDELIGVRLVDRNEEIIL 661

Query: 664 VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
              N   + FS++ +    R  +GV+  + +       +   + EG   +    + + + 
Sbjct: 662 GTHNGMSIRFSVNDVSSTGRTSQGVKGINLRSDDKVVSMDI-VREGHDVLVVTEKGFGKR 720

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            ++       RGG G ++ K   ++G    
Sbjct: 721 IDEKEFRCQARGGRGVIIQKITDKTGPLAG 750



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 59/156 (37%), Gaps = 6/156 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               + I+L + +G +      ++ S     + +   I+L  +  +V+  +      +LV
Sbjct: 653 VDRNEEIILGTHNGMSIRFSVNDVSSTGRTSQGV-KGINLRSDDKVVSMDIVREGHDVLV 711

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLI 672
           V+ KG    ++E E     R G+  +     +K   +  +  V   D + +   +  ++ 
Sbjct: 712 VTEKGFGKRIDEKEFRCQARGGRGVIIQKITDKTGPLAGLRVVGENDEIMLCTSSGIMIR 771

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
               +I +MSR   GV L   +       +     +
Sbjct: 772 LLTSEISKMSRNTMGVTLIKLEQDDFLASMAVVTED 807



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 60/181 (33%), Gaps = 10/181 (5%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
                RR        + D   +   ++++    ++ ++ G       + V         +
Sbjct: 627 EYASSRRTGLIAITLKDDDELIGVRLVDRNEEIILGTHNGMSIRFSVNDVSSTGRTSQGV 686

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
             ++ +  D +           +L+++  G    +           G  + +    +   
Sbjct: 687 KGINLRSDDKVVSMDIVREGHDVLVVTEKGFGKRIDEKEFRCQARGGRGVIIQKITDKTG 746

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
            +    V     ++++ +S G    +  SEI   +R   G T +K+  ++ +  +  VT 
Sbjct: 747 PLAGLRVVGENDEIMLCTSSGIMIRLLTSEISKMSRNTMGVTLIKLEQDDFLASMAVVTE 806

Query: 659 D 659
           D
Sbjct: 807 D 807


>gi|92114290|ref|YP_574218.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043]
 gi|91797380|gb|ABE59519.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043]
          Length = 907

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/816 (32%), Positives = 418/816 (51%), Gaps = 90/816 (11%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKS
Sbjct: 7   EILPVNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMHELGNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQEFSMRYVLVDGQGNFGSIDGDSAAAMRYTEVR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L  +++D VD+ D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN
Sbjct: 127 MSRLAHELLADLEKDTVDWVDNYDGTERIPEVLPTKVPNLLVNGASGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++EI +  LALID+  +SI+ L+ YI GPDFPTGG I+  R  I+E+YR GRG   VRAR
Sbjct: 187 MREIIDGCLALIDDYTLSIDDLMAYIPGPDFPTGG-IINGRAGILEAYRTGRGRIYVRAR 245

Query: 256 WCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +  +   G   I+VTE+PYQV K+RLIEKIAEL+  KRI  + ++RDES ++   V+ 
Sbjct: 246 HTIEHDEKTGRDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLRVVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    D+++ ++F  + ++T F +NM  L     P+++ L  IL+ ++ HRREV+ R
Sbjct: 306 EVKRGESGDVVVNNLFAHTQLQTVFGINMVALD-NGQPKILNLKEILEAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----------------- 417
           R+ F ++    R  IL+GL +A  NIDE+I +I+                          
Sbjct: 365 RTLFELKKARDRGHILEGLAVAISNIDEVIELIKASPSAAEAKEKLVARAWRPGQVTDML 424

Query: 418 ----------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                  + + L+  Q  AIL LRL  L  LE  ++  E  ++L
Sbjct: 425 ERAGATSCKPEDLEEGYGLAEGQNEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLSIL 484

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
               +++ +L S ++  + I  E++ +++ +              E+  +      + +I
Sbjct: 485 KRIAELNEILASPERLLDVIREELQAIRDQYGDERKT--------EIQASHLDLTIEDLI 536

Query: 516 EKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E + V IS  G+         ++ +      SA   K+ D ++  L A T D +LL S
Sbjct: 537 NEEDMVVTISRSGYAKTQPLSDYQAQRRGGRGKSATTMKDEDIIEHLLVASTHDTVLLFS 596

Query: 568 TDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
             GK Y L    + +      G+ +  L+ L+  + I        Y     +   ++KG 
Sbjct: 597 NRGKVYWLKVYEMPNASRGSRGKPLINLLPLDEGEAINAILPVREYREDSYIFFATAKGT 656

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                  +       G   + +  ++++      +G DH  ++  N K + F    +  M
Sbjct: 657 VKRTSLEQFSRPRSVGLIAIDLEEDDRLVGAAITSGNDHAMLLSSNGKAIRFEEGNVRAM 716

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLT-----------------------WIDSAGR 717
            R  +GVR    + G  ++VI   I + LT                        + ++  
Sbjct: 717 GRTARGVRGMRLQGG--AEVISLIIPQSLTIDAETDDDAEERPVETVGEDQVYILTASEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +        L  RGG G +  +   R+G  +++
Sbjct: 775 GYGKRTRLDEFPLRGRGGQGVIAMQTSQRNGALVAA 810


>gi|114563301|ref|YP_750814.1| DNA gyrase, A subunit [Shewanella frigidimarina NCIMB 400]
 gi|114334594|gb|ABI71976.1| DNA gyrase subunit A [Shewanella frigidimarina NCIMB 400]
          Length = 909

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/807 (30%), Positives = 388/807 (48%), Gaps = 67/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLIDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI++P +SIE+L+EYI GPDFPT   I   R+ I+++Y  GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIEDPSLSIEQLMEYIPGPDFPTAASIN-GRKGIIDAYNTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R++  +E    G   I+V EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D  
Sbjct: 241 IMRSKAEIETEENGRERIIVHEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYSQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  +L+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHVLEALAIALANIDPIIALIKASPTPAEAKAKLVAQGWELGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +   ++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPEFGIRDGQYYLTEQQAQAILELRLHRLTGLEHDKILAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L +  +    I  E+ E+ E +                           
Sbjct: 480 LLVLIAGLLFILRTPSRLMEVIKEELEEILEQYGDERRTIINANEIDMSLEDLINEEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +      +A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 540 VTLSHLGYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 599

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  L+ L+  + I        Y     +++ ++ G       
Sbjct: 600 WLKVYQLPLASRTARGRPIVNLLPLSDGEHITAILPVREYADDKYIIMATAHGTVKKTAL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID----------- 676
           +        G   + +   +++  V    G D + +     K++ F+             
Sbjct: 660 TAYSNPRANGIIAVNLKDGDQLIGVDITEGSDDIMLFSNEGKVVRFNEKARDSETGEVKI 719

Query: 677 ---------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
                     +  M R   GVR      G     +     +G   +      Y +     
Sbjct: 720 DAETGEEIIALRPMGRTATGVRGIKLDAGQKVVSLIVPKGDGA-ILTVTENGYGKRTELS 778

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  K   R+G+ + +
Sbjct: 779 EYPAKSRGTKGVVSIKVSERNGEVVGA 805


>gi|294495526|ref|YP_003542019.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219]
 gi|292666525|gb|ADE36374.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219]
          Length = 824

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/746 (31%), Positives = 387/746 (51%), Gaps = 13/746 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V ++  ++  Y+ Y++S I  RA+PD RDG KPVHRRI+H+M+E G+    A+KKS
Sbjct: 23  RVVPVLIQDEMKRSYIDYSMSVIVGRALPDARDGLKPVHRRILHSMNEAGITHDKAYKKS 82

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG++DGDSAAA RYTE R
Sbjct: 83  ARVVGDVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTEVR 142

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ + +  VDF+  Y+    EP V PSK PNLL NG++GIAVGMAT++  HN
Sbjct: 143 MDKITTEMLEDIKKGTVDFKPNYDGSLEEPEVLPSKLPNLLLNGSTGIAVGMATNMAPHN 202

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+PE  + +L + + GPDFPTGG I+     I  +Y  GR    +RA 
Sbjct: 203 LGEVVDATVKLIDDPETELAELRKIVKGPDFPTGG-IIMGTSGIKSAYETGRSPIYLRAV 261

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+    + IVV E+PYQV K+RL+E IA L+  K+I  + D+RDES  +   V+  
Sbjct: 262 TEIEEMKNDKYRIVVYELPYQVNKARLVESIANLVRDKKIEGISDLRDESGREGMRVVIE 321

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             ++ +P +L+  ++  + +ET F +    L    VP+V+ L  +++ +L HR +V+ RR
Sbjct: 322 LKKAANPKVLLNQLYKQTQLETTFGIINLALVD-GVPRVLNLRELIQIYLKHRIDVISRR 380

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAIL 432
           + F ++  + R  IL+GL +A  NIDE+I +IR     +       S F L E Q  AIL
Sbjct: 381 TVFDLRKAEERAHILQGLKVALDNIDEVIKLIRGSSTTEEAREGLISNFDLDEIQAKAIL 440

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L+ L  LE  +I  E + L+     +  +L + ++++  I  E+ E+K+ +      
Sbjct: 441 DMKLQRLTGLERQKIDEEYNGLIDTIADLKDILANDERKYAIIRDEVLELKDKYGDERRT 500

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             + +             +  +   +   +                 +  +  KE D++ 
Sbjct: 501 LIQSSREELADEDLIPEEEVVVTSTQSGYIKNIPLQTYNMQHRGGRGVRGMETKEDDTVG 560

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A T D IL  +  GK Y     ++     +  G+AI  L++L   + +        
Sbjct: 561 SIFVASTHDYILFFTNRGKVYWQKVYDIPRGSRQSRGKAIVNLLELAEGESVNAMIPVHD 620

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGE 666
           +++   L + +  G       S+     + G   + +   +++  V++  G+  + +   
Sbjct: 621 FENDRYLFMGTRDGTVKRCSLSDFSNPRKAGIIAISLKEGDELVNVLQTDGNQDIMLASR 680

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           + K L  S + +  M R  +GVR        +   +     +G T +      + +    
Sbjct: 681 HGKALRISEEDVRVMGRTARGVRGMKLAGPDVIVSLDVVDSDG-TLLTVTENGFGKRTPF 739

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 +RGG G +      R+G  +
Sbjct: 740 DEYRTLRRGGQGVITIFTDMRNGPVV 765



 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 46/125 (36%), Gaps = 2/125 (1%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             +  +     D +       +   +L ++ +G     P     + R  G+ +  +    
Sbjct: 700 RGVRGMKLAGPDVIVSLDVVDSDGTLLTVTENGFGKRTPFDEYRTLRRGGQGVITIFTDM 759

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVK 655
            N  +VT    +   ++++ SS G    +  ++I       KG   + +  ++K+  + +
Sbjct: 760 RNGPVVTVKTVEDDDEIILTSSAGIVMRIPVTDIRVQGRNTKGVKIMNIREKDKLVSLAR 819

Query: 656 VTGDH 660
           +  + 
Sbjct: 820 IKKEE 824


>gi|289663149|ref|ZP_06484730.1| DNA gyrase subunit A [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669584|ref|ZP_06490659.1| DNA gyrase subunit A [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 899

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/819 (31%), Positives = 388/819 (47%), Gaps = 80/819 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM E+G     A+
Sbjct: 4   TAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYT
Sbjct: 64  FKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM+++A  ++  ++++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP
Sbjct: 124 ESRMSRLAHELMADIEKETVDFQPNYDEKEQEPTVMPTRFPNLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALID PE+ +E L+EYI GPDFPT G I+     I   YR GRG  R+
Sbjct: 184 PHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAG-IINGTAGIAAGYRTGRGRVRI 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  VE    G   +VVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +
Sbjct: 243 RAKAEVEVADNGREAVVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME  F +NM  L     PQ+M L  +L+ ++ HRREV+
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALID-GRPQLMNLKQMLEAFIRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P+                  
Sbjct: 362 TRRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGA 421

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + L+E Q   IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLGAAGAEASKPEDLPPGVGLIKGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
              E +  +L +       I  E+  ++E +        R +          A     + 
Sbjct: 482 GVIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ +      SA   KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
           P   L        G  I   I L   + +        Y     +   +  G       SE
Sbjct: 602 PVHQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    GD  V +   N K + F    +  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVR 721

Query: 689 LQSY----------------------KDGGISDVI---------CFKICEG---LTWIDS 714
                                     +   + DV+           ++ +       + +
Sbjct: 722 GIRLTKGEEVVSLIVAERAGGVEEEIEADDVDDVVETTDGAEAAVIEVADDGNVAYILTA 781

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               + +           RG  G +  +   R+GK + +
Sbjct: 782 TENGFGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGEN 667
             +L  +  G       +E     R  +  + +     + + ++ V+    D V ++ + 
Sbjct: 776 AYILTATENGFGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGATDEVLLISDG 835

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
             L+     +I  + R  +GV L     G     +
Sbjct: 836 GTLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAV 870


>gi|325297763|ref|YP_004257680.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170]
 gi|324317316|gb|ADY35207.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170]
          Length = 843

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/757 (31%), Positives = 396/757 (52%), Gaps = 21/757 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   +++ Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +K
Sbjct: 4   QDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG+IDGDS AA RYTE
Sbjct: 64  KAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++ E ++Q + ++ VDF + +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +A IDN +I  + L++YI  PDFPTGG I      + E+Y  GRG   +R
Sbjct: 184 HNLSEVIDACVAYIDNSDIDTDGLMQYIKAPDFPTGGYIY-GVSGVREAYETGRGRIVMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       I+V EIPY V K  LIEKIA L+  K++  +  I DE+  +   ++
Sbjct: 243 AKTEI-ESHPTHDKIIVNEIPYNVNKKELIEKIASLVNEKKLDGISYINDETDREGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +  +++  +F ++++++ F +N   L     P+++ L  +++ ++ HR EV+ 
Sbjct: 302 IDVKRDANASVVLNKLFKMTELQSSFNVNNIALVH-GRPRLLSLKDLIRLFVEHRHEVVI 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF LTE Q  A
Sbjct: 361 RRTKFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAVTNLMDRFQLTEVQARA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RLR L  L + Q+ +E + L+ +    + +L++ +     I  E+ EVKE +    
Sbjct: 421 IVEMRLRQLTGLLQEQLHAEYEELMKQIAYYEEILSNEELCKKVIKDELLEVKEKYGDKR 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                 ++         A  +  +       +  +     R+     V       ++ D 
Sbjct: 481 RSEIVYSSEEFNPEDFYADDEMVITISHLGYIKRTPLSDFRTQHRGGVGAKGSETRDEDF 540

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF-- 606
           ++    A   + +L  +  GK Y L    +  G    +  AIQ L+++  +  +      
Sbjct: 541 IEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGNRTSKGRAIQNLLNIEADDKVTAYLRV 600

Query: 607 ------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
                  + ++  +L  +  G        +     + G   + +  ++++  V    GD 
Sbjct: 601 KNLNDTEFVNSHYVLFCTKNGVIKKTVLEQYSRPRQNGVNAITIREDDRVIEVRMTKGDN 660

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWIDSA 715
            + +   N + + F+   + EM R   GVR  +  + G   +  +IC K  +  T +  +
Sbjct: 661 DIVIANRNGRAIRFNETAVREMGRTATGVRGITLDEDGQDEVVGMICIKDPQKETIMVIS 720

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +  +        RGG G        ++GK ++
Sbjct: 721 EHGYGKRSDIEDYRKTNRGGKGVKTLNITEKTGKLVA 757


>gi|77917623|ref|YP_355438.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380]
 gi|77543706|gb|ABA87268.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380]
          Length = 835

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/760 (34%), Positives = 413/760 (54%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E+N K V++   L + Y+ YA+S I  RA+PD+RDG KPVHRR+++AM E+G  +   
Sbjct: 2   LTEQNKKTVNIEDELRKSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNAYNKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VRLAQ F  RYPL+ GQGNFG++DGDSAAA RY
Sbjct: 62  YKKSARVVGDVIGKYHPHGDSAVYDTIVRLAQDFAMRYPLVDGQGNFGSLDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM ++A  +L  ++++ VDF   Y++   EP+V P KFPNLL NG+ GIAVGMAT I
Sbjct: 122 TEVRMDKLAHELLADLEKETVDFGPNYDDSLQEPLVLPCKFPNLLVNGSEGIAVGMATKI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A+ID+P +  E L   I GPDFPT G I+  RE I ++Y  GRG  +
Sbjct: 182 PPHNLGEVIDGLVAIIDDPTLDDEDLFRLIPGPDFPTAGFIL-GREGIRKAYETGRGIVQ 240

Query: 252 VRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  VE+  R     IVVTEIPYQV K+RLIEKIAEL+ +++I  + D+RDES  +  
Sbjct: 241 MRARALVEKDRRTSREKIVVTEIPYQVNKARLIEKIAELVKSRKIEGISDLRDESDREGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    + + P++++  ++ ++ M++ F + M  +     P+V+ L  +L+ ++ HR+E
Sbjct: 301 RVVVELKKDVIPEVILNQLYKMTAMQSSFGIIMLAIV-NGQPRVLSLRAVLEHFIEHRKE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQ 427
           ++ RR  F ++  + +  IL+G  IA  N+DE+IAII+    P+     ++ RF+L+E Q
Sbjct: 360 IVTRRCIFELRKAEEKAHILEGFKIALENLDEVIAIIKQSANPREAKQRLMERFALSEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL  L  +E  +I +E   +LA   ++  +L S  +    I  E+ E++E F+
Sbjct: 420 AQAILDMRLHRLTGMERDKIMAEYREILALINRLKEILASEVEILKIIKSELSEIREKFA 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   +          + +I  E + V +S+ G+I+          +     
Sbjct: 480 DP-----RRTEIVDHRGD---LSLEDLIVDEDMVVTVSHSGYIKRNAVSLYRSQRRGGKG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           ++ +  KE D ++    A T   +L+ +  GK Y L    +        G+AI  L+ L 
Sbjct: 532 VTGMRPKEEDFVEQLFIASTHSFVLVFTDAGKVYWLKVHEIPQGGRASRGKAIVNLLQLQ 591

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             +++ +      +     ++  +  G     +          G   L +   +++    
Sbjct: 592 SGENVTSILPVREFTEGRYIIFATQNGIVKKTDLMAYANPRSGGIIALTIDEGDRLVSTR 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK-DGGISDVICFKICEGLTW 711
              G+  V +  +N K + F       M R  +GVR  + + D  +  +         T 
Sbjct: 652 LSDGEMDVLLASQNGKAIRFPEKDARAMGRTSRGVRGMALEGDDQVIGMEVVSDTTAATL 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +      Y +  N        RGG G +  K   R+GK +
Sbjct: 712 VTVTEHGYGKRTNLDEYRQQGRGGKGIITIKTSERNGKVV 751



 Score = 71.0 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFS 674
             G        E     R GK  + + + E+   +  +  +  D  +  + +  K+L   
Sbjct: 716 EHGYGKRTNLDEYRQQGRGGKGIITIKTSERNGKVVDIKLINDDFDLMFITDGGKVLRTR 775

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  +  + R  +GVRL   + G     + 
Sbjct: 776 VADLSVIGRNTQGVRLMVLEPGERIVAVA 804



 Score = 42.5 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            G                G+ I  +     N  +V   + +    L+ ++  G       
Sbjct: 717 HGYGKRTNLDEYRQQGRGGKGIITIKTSERNGKVVDIKLINDDFDLMFITDGGKVLRTRV 776

Query: 629 SEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
           +++    R   G   + +   E++  V K+    
Sbjct: 777 ADLSVIGRNTQGVRLMVLEPGERIVAVAKLAEKE 810


>gi|146318729|ref|YP_001198441.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33]
 gi|146320933|ref|YP_001200644.1| DNA gyrase subunit A [Streptococcus suis 98HAH33]
 gi|253751833|ref|YP_003024974.1| DNA gyrase subunit A [Streptococcus suis SC84]
 gi|253753656|ref|YP_003026797.1| DNA gyrase subunit A [Streptococcus suis P1/7]
 gi|253755463|ref|YP_003028603.1| DNA gyrase subunit A [Streptococcus suis BM407]
 gi|18253149|dbj|BAB83960.1| DNA gyrase subunit A [Streptococcus suis]
 gi|145689535|gb|ABP90041.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33]
 gi|145691739|gb|ABP92244.1| DNA gyrase subunit A [Streptococcus suis 98HAH33]
 gi|251816122|emb|CAZ51745.1| DNA gyrase subunit A [Streptococcus suis SC84]
 gi|251817927|emb|CAZ55705.1| DNA gyrase subunit A [Streptococcus suis BM407]
 gi|251819902|emb|CAR45950.1| DNA gyrase subunit A [Streptococcus suis P1/7]
 gi|292558403|gb|ADE31404.1| DNA gyrase subunit A [Streptococcus suis GZ1]
 gi|319758185|gb|ADV70127.1| DNA gyrase subunit A [Streptococcus suis JS14]
          Length = 814

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA   ++DNPE++  +++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F  + ++T F     +     VP+++ +  IL+ ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKQTQLQTNFSF-NMLAIQNGVPKILSVRQILESYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ +F L+E Q 
Sbjct: 359 VTRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTEL--MVGEVLSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T DR+L  +  G+ Y L    +       +   +  L+ L  
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           N+ I T        ++   L   + +G       SE     + G   L +  ++++  V 
Sbjct: 592 NEAIQTIINVTKDQEADSYLFFATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   + +  +    + F+   +  M R   GVR  + ++G         I +    +
Sbjct: 652 LTNGQADIIMGTKFGYSVRFTETDVRNMGRTATGVRGINLREGDQLVGATM-ISDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + +           RGG G    K   ++G    
Sbjct: 711 VLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKNGSLAG 750


>gi|194288904|ref|YP_002004811.1| DNA gyrase subunit a [Cupriavidus taiwanensis LMG 19424]
 gi|193222739|emb|CAQ68742.1| DNA gyrase, subunit A, type II topoisomerase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 892

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/805 (30%), Positives = 391/805 (48%), Gaps = 64/805 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               +    VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  
Sbjct: 2   DPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP + P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLHDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  L L+ NP+ ++++L+E I  PDFPT G I+   + + E YR GRG  
Sbjct: 182 IPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAG-IIYGIQGVREGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L+E+IAEL+  K+I  + DIRDES +  
Sbjct: 241 VMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R+  P++++ +++  + ++  F +NM  L   R P+++ L  +L+ +LAHRR
Sbjct: 301 MRVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVD-RQPRLLNLRQMLEYFLAHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------- 414
           EV+ RR+ F ++    R  +L+GL +A  NIDE IAII+    P                
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKAWDSAL 419

Query: 415 -----------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L++ Q   IL +RL+ L  LE+ 
Sbjct: 420 VREMLARAEGETPGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I  E  +++AE   +  +L   ++    I  E+  ++  F                +  
Sbjct: 480 KIVQEYRDIMAEIADLLDILARPERITTIIIDELTAIRAEFGDERRSQIELNATELDTED 539

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
                   +       +        R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +        G  I  +  L+  + I        +D+   + + +++
Sbjct: 600 FSNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSEGEKINVILPVRQFDAEHFIFMATAR 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       +E     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL----------TWIDSAGRSYNRSENDLLG 728
            M R  +GVR  + ++G     +     E            + + +    Y +       
Sbjct: 720 PMGRQARGVRGMNLEEGQAVIAMLVAPAETAEEAADAGVRGSVLTATENGYGKRTPIAEY 779

Query: 729 WLGKRGGVGSLVPKGFPRSGKFLSS 753
               RG  G +  +   R+G+ +++
Sbjct: 780 TRHGRGTKGMIAIQTSERNGRVVAA 804



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 61/189 (32%), Gaps = 17/189 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 661 TVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRP 720

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST-----------CKLLVVSSKGNAFIVEESEI 631
                  ++ + +L   Q ++   V  +              +L  +  G       +E 
Sbjct: 721 MGRQARGVRGM-NLEEGQAVIAMLVAPAETAEEAADAGVRGSVLTATENGYGKRTPIAEY 779

Query: 632 IANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KG 686
             + R  K  + +     +   +   +    D + ++     L+   + +I EM R  +G
Sbjct: 780 TRHGRGTKGMIAIQTSERNGRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQG 839

Query: 687 VRLQSYKDG 695
           V L +  +G
Sbjct: 840 VTLINVDEG 848


>gi|152971178|ref|YP_001336287.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150956027|gb|ABR78057.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 877

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/793 (32%), Positives = 389/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA +D+ +ISIE L+ +I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +      +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAENDSVVSLIIPRGEGA-ILTVTQNGYGKRTAAAEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
             + M+      VV      +R++   +  +  +   E DS+   +       IL ++ +
Sbjct: 691 QDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAENDSVVSLIIPRGEGAILTVTQN 750

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G      A    +     + +  +     N  +V A   D   ++++++  G       S
Sbjct: 751 GYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVS 810

Query: 630 EIIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           E+    R   G   ++ + +E +         V  + +
Sbjct: 811 EVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|253581065|ref|ZP_04858325.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847601|gb|EES75571.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 857

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/774 (30%), Positives = 401/774 (51%), Gaps = 39/774 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L   +++ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+ 
Sbjct: 1   MEDN---IFDKVHEVDLEKTMKDSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +L  +++D VDF+  ++E + EPVV PS++PNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E+ +A + +ID       E ++E++L+ + GPDFPTG +I+  R  I 
Sbjct: 178 GMATNIPPHNLREVVDAVVKIIDNIIEEQRETTMEEILDIVKGPDFPTGAMIL-GRRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   I+VTE+PY V K+RLI KIAEL+  K+I  + D
Sbjct: 237 EAYRTGRGKIRVRAVTNIETLPNGKSRIIVTELPYLVNKARLISKIAELVRDKKIDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR---VPQVMPL 357
           + D S+ +   +     +  + ++++  ++  + ++  F +NM  L        P+V+ L
Sbjct: 297 LNDHSSREGMRICIDLRKDANANVVLNLLYKHTQLQDTFGVNMLSLIPNNGSLEPKVLNL 356

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--- 414
             +L+ +LAH+ +V+ RR+ + +     R  IL+GLL A  NIDE+I IIR     +   
Sbjct: 357 KQMLEYYLAHQEDVVTRRTKYDLNKARERAHILEGLLKALDNIDEVIRIIRASQNVQIAK 416

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++ RF LT+ Q  AI+++RLR+L  LE  ++++E  +L+ +  K +++L         
Sbjct: 417 QELMDRFELTDVQAQAIVDMRLRALTGLEREKLEAEYADLMEKIRKYEAILADRSLLLRV 476

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  EI  + E +        R+T+             + +I +E   + ++  G+I+ + 
Sbjct: 477 IREEILAIAEKYGD-----DRKTSI---GYDVYDISTEDLIPRENTVITMTKLGYIKRMT 528

Query: 535 SHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
             +          +  +   E D ++  L   T   ++  +  G+ Y L A  +      
Sbjct: 529 VDNFRSQNRGGRGIKGMQTLEDDYIEELLMTTTHHYLMFFTNTGRVYRLKAYEIPEAGRT 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G AI  L+ L   + I        ++    L++ +  G        E     + G   
Sbjct: 589 ARGTAIINLLQLMPGECITAVIPLRKFEDGHYLMMATKNGLVKKTPIKEYANVRKNGLAA 648

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
           + +  ++++  V        + +V ++   + F    +    R   GVR  +  DG    
Sbjct: 649 ITLRDDDELIEVKLTDDKKDIILVTKDGMCIRFKETDVRSTGRTSMGVRGMNIDDGDEVV 708

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     +G   +  +     +  +        RGG G    K   ++G  + +
Sbjct: 709 AMQLN-SQGDCLLIVSANGMGKRTSMGEFTCQNRGGKGVKCYKITEKTGDVIGA 761



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 I+L++ DG        ++ S       ++ + +++   ++V   +      LL+
Sbjct: 663 TDDKKDIILVTKDGMCIRFKETDVRSTGRTSMGVRGM-NIDDGDEVVAMQLNSQGDCLLI 721

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLL 671
           VS+ G        E     R GK      +   + + +     V  D  V ++     ++
Sbjct: 722 VSANGMGKRTSMGEFTCQNRGGKGVKCYKITEKTGD-VIGARAVNEDNEVMLITTEGIII 780

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +   I  + R   GV+L +  +G     + 
Sbjct: 781 RIACADISILGRITSGVKLINLTEGVTVASVA 812


>gi|28189068|dbj|BAC56218.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA   ++DNPE++  +++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F  + ++T F     +     VP+++ +  IL+ ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKQTQLQTNFSF-NMLAIQNGVPKILSVRQILESYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ +F L+E Q 
Sbjct: 359 VTRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTEL--MVGEVLSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T DR+L  +  G+ Y L    +       +   +  L+ L  
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           N+ I T        ++   L   + +G       SE     + G   L +  ++++  V 
Sbjct: 592 NEAIQTIINVTKDQEADSYLFFATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   + +  +    + F+   +  M R   GVR  + ++G         I +    +
Sbjct: 652 LTNGQADIIMGTKFGYSVRFTETDVRNMGRTATGVRGINLREGDQLVGATM-ISDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + +           RGG G    K   ++G    
Sbjct: 711 VLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKNGSLAG 750



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E              E +      + +G ++              L AL+ KE D L 
Sbjct: 589 LEENEAIQTIINVTKDQEADSYLFFATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +    I++ +  G +      ++ +       ++  I+L     +V A +     
Sbjct: 649 NVFLTNGQADIIMGTKFGYSVRFTETDVRNMGRTATGVRG-INLREGDQLVGATMISDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE     R GK    +   +K   +  +  V+GD  + V+ +  
Sbjct: 708 EVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKNGSLAGLTTVSGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++    D   + ++ F + +     +   
Sbjct: 768 VIIRTSVANISQTGRSTMGVKVMRLNDE--AKIMTFALVDAAEIKEEKE 814


>gi|325915462|ref|ZP_08177776.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937]
 gi|325538344|gb|EGD10026.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937]
          Length = 902

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/819 (31%), Positives = 384/819 (46%), Gaps = 80/819 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM E+G     A+
Sbjct: 4   TAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYT
Sbjct: 64  FKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP
Sbjct: 124 ESRMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALID PE+ +E L+EYI GPDFPT G I+     I   YR GRG  R+
Sbjct: 184 PHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAG-IINGTAGIAAGYRTGRGRVRI 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  VE    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME+ F +NM  L     PQ+M L  +L+ ++ HRREV+
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALID-GRPQLMNLKQMLEAFIRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ + ++    R  +L+GL +A  NIDE+I +I+    P+                  
Sbjct: 362 TRRTIYELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGA 421

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + L+E Q   IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLGAAGAEASKPEDLAPGVGLANGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
              + +  +L +       I  E+  ++E +        R +          A     + 
Sbjct: 482 EVIQGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ +      SA   KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
           P   L        G  I   I L   + +        Y     +   +  G       SE
Sbjct: 602 PVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    GD  V +   N K + F    +  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDDGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVR 721

Query: 689 LQSYKDGGISDVICFKICEG----------------------------------LTWIDS 714
                 G     +      G                                     + +
Sbjct: 722 GIRMPKGEEVVSLIVSDPAGGIEIESDEDAADEVVDTTDGADAAVIDVADDGNVAYILTA 781

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+GK + +
Sbjct: 782 TENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 33/106 (31%), Gaps = 8/106 (7%)

Query: 604 TAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKV 656
                        +L  +  G       +E     R  +  + +     + + ++ V+  
Sbjct: 765 AVIDVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
             D V ++ +   L+     +I  + R  +GV L     G     +
Sbjct: 825 ATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAV 870


>gi|166711584|ref|ZP_02242791.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 898

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/819 (31%), Positives = 389/819 (47%), Gaps = 80/819 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM E+G     A+
Sbjct: 4   TAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYT
Sbjct: 64  FKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP
Sbjct: 124 ESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALID PE+ +E L+EYI GPDFPT G I+     I   YR GRG  R+
Sbjct: 184 PHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAG-IINGTAGIAAGYRTGRGRVRI 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +
Sbjct: 243 RAKADVEVADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME+ F +NM  L     PQ+M L  +L+ ++ HRREV+
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALID-GRPQLMNLKQMLEAFIRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P+                  
Sbjct: 362 TRRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGA 421

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + L+E Q   IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
              E +  +L +       I  E+  ++E +        R +          A     + 
Sbjct: 482 GVIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ +      SA   KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
           P   L        G  I   I L   + +        Y     +   +  G       SE
Sbjct: 602 PVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYVDNRYVFFATRNGTVKKTPLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    GD  V +   N K + F    +  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVR 721

Query: 689 LQSY----------------------KDGGISDVI---------CFKICEG---LTWIDS 714
                                     +   + DV+           ++ +       + +
Sbjct: 722 GIRLTKGEEVVSLIVAERAGGADEEIEADDVDDVVETTDGAETAVIEVADDGNVAYILTA 781

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+GK + +
Sbjct: 782 TENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 36/122 (29%), Gaps = 8/122 (6%)

Query: 603 VTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVK 655
                         +L  +  G       +E     R  +  + +     + + ++ V+ 
Sbjct: 764 TAVIEVADDGNVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLL 823

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
              D V ++ +   L+     +I  + R  +GV L     G     +           D 
Sbjct: 824 GATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVEDV 883

Query: 715 AG 716
           AG
Sbjct: 884 AG 885


>gi|28189058|dbj|BAC56210.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA   ++DNPE++  +++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F  + ++T F     +     VP+++ +  IL+ ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKQTQLQTNFSF-TMLAIQNGVPKILSVRQILESYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ +F L+E Q 
Sbjct: 359 VTRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTEL--MVGEVLSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T DR+L  +  G+ Y L    +       +   +  L+ L  
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           N+ I T        ++   L   + +G       SE     + G   L +  ++++  V 
Sbjct: 592 NEAIQTIINVTKDQEADSYLFFATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   + +  +    + F+   +  M R   GVR  + ++G         I +    +
Sbjct: 652 LTNGQADIIMGTKFGYSVRFTETDVRNMGRTATGVRGINLREGDQLVGATM-ISDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + +           RGG G    K   ++G    
Sbjct: 711 VLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKNGSLAG 750



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E              E +      + +G ++              L AL+ KE D L 
Sbjct: 589 LEENEAIQTIINVTKDQEADSYLFFATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +    I++ +  G +      ++ +       ++  I+L     +V A +     
Sbjct: 649 NVFLTNGQADIIMGTKFGYSVRFTETDVRNMGRTATGVRG-INLREGDQLVGATMISDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE     R GK    +   +K   +  +  V+GD  + V+ +  
Sbjct: 708 EVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKNGSLAGLTTVSGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++    D   + ++ F + +     +   
Sbjct: 768 VIIRTSVANISQTGRSTMGVKVMRLNDE--AKIMTFALVDAAEIKEEKE 814


>gi|254462505|ref|ZP_05075921.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206679094|gb|EDZ43581.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 767

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/769 (52%), Positives = 537/769 (69%), Gaps = 27/769 (3%)

Query: 6   ISNSNTLVEENVKAV--SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+  T    NV  +   LR AL +RYL YALSTI  RA+PD RDG KPVHRRI++AM E
Sbjct: 1   MSDDTTDENLNVPDLSEPLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LKLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT  AE +L+G+ E+AVDFR+ Y+   +EPVV P+ FPNLLANG+SGI
Sbjct: 121 DNPAAARYTEARMTLAAEALLEGLAENAVDFRENYDGTLTEPVVLPASFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+CEA L LI  P+   + LL ++ GPDFPTGG IVE +E+I E+Y
Sbjct: 181 AVGMATNIPPHNIAELCEACLHLIKTPDARDDTLLNFVPGPDFPTGGTIVEPKENIAEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+R ++ VE++GRG W IVVTEIPYQVQKS+LIEKIA+LI  K+IP+L DIRD
Sbjct: 241 RTGRGSFRLRCKYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIADLIQTKKIPILGDIRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAEDVRIVL P++++++PD+LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+ 
Sbjct: 301 ESAEDVRIVLEPRSKNVEPDILMSMLYRSSDLEVRFSLNMNVLIDGLTPKVCSMKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           +L HRR+VL RRS+ RM+ ID R+E+L+GL+IA+LN+D +I IIR +D PK  ++     
Sbjct: 361 FLDHRRDVLIRRSTHRMEKIDHRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMREDWG 420

Query: 423 ---------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                                LTE Q +AILN+RLRSLR+LEE ++K E D L+ E+  +
Sbjct: 421 RTFTRAMSEADYVGPPTGEGELTEVQAEAILNMRLRSLRRLEEMELKRERDALMEERAGL 480

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           D LLNS + QW+ IA +IRE K+ F K    G RR+ F E +   +    +AMI++EPIT
Sbjct: 481 DDLLNSVELQWSSIADQIRETKKQFGKDHPAGARRSQFAE-AGEVEEVPLEAMIDREPIT 539

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV S  GWIR++  H      L FK+GD  +   HA TTDR+L   ++G+ YT+ A NL 
Sbjct: 540 VVCSEMGWIRAMTGHIDLTRELKFKDGDGPRFIFHAETTDRLLAFGSNGRFYTVSAANLP 599

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG GE ++L++DL +   +V  F++ S  KLLV SS G+ F+V E +++A TR GK  
Sbjct: 600 GGRGMGEPLRLIVDLPNEAGLVDLFIHKSGRKLLVASSAGDGFVVPEDDVVAQTRSGKQV 659

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
           L V  + +  +   VTGD VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SDV 
Sbjct: 660 LNVRGDNRALVCKPVTGDSVAVVGENRKVLVFPLDELPEMGRGKGVRLQKYKDGGMSDVA 719

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            F + +GL+W+D AGR   R+E +L  W GKR G G + P+GFPR  +F
Sbjct: 720 TFTMADGLSWLDPAGR--TRTEVELAEWTGKRAGSGRMAPRGFPRDNRF 766


>gi|186475503|ref|YP_001856973.1| DNA gyrase subunit A [Burkholderia phymatum STM815]
 gi|184191962|gb|ACC69927.1| DNA gyrase, A subunit [Burkholderia phymatum STM815]
          Length = 859

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/782 (30%), Positives = 379/782 (48%), Gaps = 56/782 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   Y+ YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYIEYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF+  Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ EI +A   
Sbjct: 121 DIDKETVDFQPNYDGSENEPSILPARIPNLLINGSSGIAVGMATNIPPHNLSEIVDACHH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NPE SI++L+E +  PDFPT G I+     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLKNPEASIDELIEIVPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  +L  +L+HRREVL RR+ + ++   
Sbjct: 300 ILNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEMLSHFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---------------------- 422
            R  +L+GL +A  NID+ IAII+    P                               
Sbjct: 359 ERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMDRSWDSSIVREMLQRAETDNATS 418

Query: 423 ------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++  + I  E+  +K  F                +          +    
Sbjct: 479 ADLLDILARPERITSIIFDELTTIKSEFGDERRSKIEMNATELNTEDLITPQDMVVTMSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ K       A   KE D +     A+T D IL  S  G+ Y L   
Sbjct: 539 SGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIDTLFIANTHDHILCFSNRGRVYWLKVY 598

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G  I  +  L   + I        + +   + + ++ G            
Sbjct: 599 EVPQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSADKFVFMATALGTVKKTPLEAFSR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +KG   + +   + +       G+H V +  ++ K + F  + +  M R  +GVR   
Sbjct: 659 PLKKGIIAVGLDDGDYLIGAAITDGEHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQ 718

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +DG     +     E  + + +    Y +           RG  G +  +   R+GK +
Sbjct: 719 LEDGQSVIALLVAGDEQQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVV 778

Query: 752 SS 753
           ++
Sbjct: 779 AA 780



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 662 KGIIAVGLDDGDYLIGAAITDGEHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 721

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
               I      D    +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 722 GQSVIALLVAGDEQQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 781

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V  +  + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 782 LVDPEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEG 824


>gi|77360364|ref|YP_339939.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875275|emb|CAI86496.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 899

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/814 (30%), Positives = 390/814 (47%), Gaps = 74/814 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDLAHGILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +++  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI NPE+SI +L++YI GPDFPT   I+  ++ I ++Y  GRG  
Sbjct: 182 IPPHNLTEVVNGCLALIQNPELSILELMDYIPGPDFPTAA-IINGKKGIEQAYLTGRGKV 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  +E +       I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D 
Sbjct: 241 YMRARAEIEVDEKTHRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++ +++  + ++T F +NM  L     P+   L  +L+E++ HRR
Sbjct: 301 MRIVIEIKRGDVGEVILNNLYAQTQLQTVFGMNMVALI-NNQPKCFNLKEMLEEFIIHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------- 415
           EV+ RR+ F ++    R  +L+GL IA  NID II +IRN   P                
Sbjct: 360 EVVTRRTVFDLRKARDRAHMLEGLAIALANIDPIIELIRNSPTPAEAKVALTARSWELGN 419

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ ++E Q  AIL+LRL  L  LE  +I +E 
Sbjct: 420 VKAMLDKAGEDNVARPDWLAAELGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILTEY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +LL    ++  +L + ++    I  E+ E+K  +                         
Sbjct: 480 QSLLDLIAELLHILATPERLMEVIRDELVEIKAQYGDERRTEINAAAHDISLEDLITEEN 539

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   K+ D ++  L A+T D IL  ST G+
Sbjct: 540 VVVTLSHEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGR 599

Query: 572 AYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L   S    G+ I  L+ L  ++ I        Y     + + ++ G     
Sbjct: 600 LYWLKVYQLPLASRAARGKPIVNLLPLEADERITAILPVREYAEDKYIFMATAFGTVKKT 659

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ-------- 677
             +        G   + ++  + +  V    G + + +  +  K++ F   +        
Sbjct: 660 PLTAYSRQRASGIIAVNLNEGDSLIGVDVTDGSNEIMLFTDAGKVVRFKEAEETTVVDEN 719

Query: 678 -----------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
                            +  M R   GVR     +G     +     +G   +      Y
Sbjct: 720 GNPVLDEEGNPEIRFKGVRPMGRTATGVRGIKMPEGQRVVSLIVPKTDGA-ILTVTENGY 778

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           R   G +  K   R+G  + +
Sbjct: 779 GKRTLLEDYPAKSRATQGVVSIKVSERNGAVVGA 812


>gi|134297888|ref|YP_001111384.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1]
 gi|134050588|gb|ABO48559.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1]
          Length = 818

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/748 (32%), Positives = 395/748 (52%), Gaps = 14/748 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI++++ E+GL    +++KS
Sbjct: 7   KVIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKSYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVG+V+   HPHGD ++YD++VRLAQ F  RYPLI G GNFG+IDGD  AA RYTEAR
Sbjct: 67  AGIVGKVMQDFHPHGDSAIYDAMVRLAQDFASRYPLIQGHGNFGSIDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L  +D++ VDF   Y+    EP + PSK PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MAKITLEMLADIDKETVDFAPNYDNRTEEPTILPSKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  L +I +P ++ + L++ I GPDFPTG   +  ++ I ++YR GRG  ++RA+
Sbjct: 187 MGEVIDGVLMMIKDPNVTPDDLMKVIKGPDFPTGA-TIMGKDGIRQAYRTGRGSVKMRAQ 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   I+V EIPYQV K++LIEKIAEL+  K+I  + D+RDES      ++  
Sbjct: 246 TTIETKANGRPVIIVNEIPYQVNKAKLIEKIAELVKDKKIEGISDLRDESDRRGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P++++  ++  + M+  F + M  L     P+V+ L  ++  +L H+++V+ RR
Sbjct: 306 LKKDSNPNVILNLLYKHTQMQESFGIIMLALV-NNEPKVLNLAQVIFHYLEHQKDVITRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAIL 432
           + + ++  + R  I++GL IA  N+DE+I  IR     +        +F+LTE Q +AI+
Sbjct: 365 TRYELKKAEARAHIVEGLRIALANLDEVIKTIRESKNTEEARRGLVDKFNLTEIQAEAIV 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLRSL  LE  +++ E   LL + + + S+L   ++  N I  E+  VKE F+ +   
Sbjct: 425 EMRLRSLTALEVEKLEKEYKELLEKIDYLRSILADEQKVLNIIRDELLVVKEKFADARRT 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                   +    D    +  ++       +   +    RS K     ++A+  KE D +
Sbjct: 485 LISNVAAGDFDIEDLIDEEDMVVTITNQGYIKRISMDTYRSQKRGGKGITAMGTKEEDFV 544

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV-- 607
           +    A T   +L  +  GK Y L    +       +   I  L+  + ++ + T     
Sbjct: 545 RDLFIASTHHFLLFFTNKGKVYRLKVYEVPEASRTAKGTPIINLLSFDSDEYVTTVIPIK 604

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            ++ T  L + +  G       +E  ++ R G   + +  ++K+  V    G + + +  
Sbjct: 605 EFEETAYLFMATKHGIVKKTALTEYNSSRRDGLIAINLDEKDKLVAVELTHGKEEIIMCT 664

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           +    + FS + +  M R  +GV+  +        V    I EG + +      Y +   
Sbjct: 665 QEGIAIRFSEEDVRPMGRVTRGVKGITLSQNDHV-VKMDVIKEGASLLTVTANGYGKRTP 723

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +  RGG G +  K   R+G    
Sbjct: 724 MDEYRIQARGGKGIINIKTTKRNGAVTG 751



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 6/191 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++          S    L A++  E D L      H  + I++ + +G A      ++  
Sbjct: 620 IVKKTALTEYNSSRRDGLIAINLDEKDKLVAVELTHGKEEIIMCTQEGIAIRFSEEDVRP 679

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   I L+ N  +V   V      LL V++ G        E     R GK  +
Sbjct: 680 MGRVTRGV-KGITLSQNDHVVKMDVIKEGASLLTVTANGYGKRTPMDEYRIQARGGKGII 738

Query: 643 KVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            +     +     ++V    D V ++     ++  ++  +  M R  +GV L    +   
Sbjct: 739 NIKTTKRNGAVTGVLVVSEEDEVMMISAEGIIIRINVKDVSSMGRNTQGVTLMRTGENDH 798

Query: 698 SDVICFKICEG 708
              I   I E 
Sbjct: 799 IVAIAKVITEE 809


>gi|326424122|ref|NP_761835.2| DNA gyrase subunit A [Vibrio vulnificus CMCP6]
 gi|319999505|gb|AAO11362.2| DNA gyrase, A subunit [Vibrio vulnificus CMCP6]
          Length = 903

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/817 (31%), Positives = 400/817 (48%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDEII +IRN   P            
Sbjct: 355 DHRREVVTRRTIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLESAGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E +++  +L S ++    I  E+  V++ F           +         A
Sbjct: 475 DEYKALLDEIKELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  L+ L  ++ I        + +   + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIVNLLPLEESERITAILPVTEFSADKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   + +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFSNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPVL 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     +G   +    
Sbjct: 715 DENGNPALDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKNDGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +           RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTVLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810


>gi|21104366|dbj|BAB93453.1| DNA gyrase A [Actinobacillus actinomycetemcomitans]
          Length = 887

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/810 (31%), Positives = 398/810 (49%), Gaps = 73/810 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VSL   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +   ++K
Sbjct: 6   QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG++DGD+ AA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L+ +I GPDFPT   ++  R+ I E+Y+ GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAA-LINGRKGIEEAYKTGRGKIYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E   +G   I+V EIPYQV K++LIEKIA+ +  K+I  +  +RDES +D   ++ 
Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++ L+ M+  F +N+  L     P+++ L  +++ ++ HRREV+ R
Sbjct: 305 EIKRDAVGEVVLNNLYALTQMQVTFGINIVALDH-GQPKLLNLKQLIEAFVLHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R+ F ++    R  IL+GL IA  N+D II +IR    P+                    
Sbjct: 364 RTIFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLTHPWQLGHVADML 423

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                             +    + LTE Q  AIL+LRL+ L  L   +I  E   LL  
Sbjct: 424 AASGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDA 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             K+  +L S ++    I  E+ +++E F+          +         A     +   
Sbjct: 484 IGKLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLS 543

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y L  
Sbjct: 544 HEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKV 603

Query: 578 GNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
             L        G  I  ++ LN N+ I        Y+    +++ ++ G    +  +E  
Sbjct: 604 YQLPQASRGARGRPIVNILPLNENERITAILPVAAYEEDKFVVMTTAGGIVKKIALTEFS 663

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
                G   L +  E+++  V    G + + +     +++ FS   +  M R   GVR  
Sbjct: 664 RPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAMGRLATGVRGI 723

Query: 691 SYK--------------------------DGGISDVICFKICE-GLTWIDSAGRSYNRSE 723
                                        D  I  V+   I +     + +    Y +  
Sbjct: 724 KLALTNDLNDDESAVEIEDVSDDNAEETLDLNIDKVVSLVIPKNNGEILAATQNGYGKRT 783

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    R   G +  K   R+GK +++
Sbjct: 784 KLDEYPTKSRNTKGVISIKVSERNGKVVAA 813


>gi|168237286|ref|ZP_02662344.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194735318|ref|YP_002115344.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710820|gb|ACF90041.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289683|gb|EDY29046.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 878

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 390/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAAEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|307946581|ref|ZP_07661916.1| DNA topoisomerase IV, A subunit [Roseibium sp. TrichSKD4]
 gi|307770245|gb|EFO29471.1| DNA topoisomerase IV, A subunit [Roseibium sp. TrichSKD4]
          Length = 752

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 440/750 (58%), Positives = 575/750 (76%), Gaps = 3/750 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG + I        + V+ + LR ALEERYLAYALSTI  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MGNETIPPQGP---DGVQGIDLRTALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYA 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + LD G+ FKK AR+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPL+ GQGNFGN
Sbjct: 58  MRLLKLDPGSGFKKCARVVGDVIGKYHPHGDQAVYDALVRLAQTFAQRYPLVDGQGNFGN 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD+AAA RYTEAR+T+ A+ +L G+DE+A+DFR+TY+ ED EP+V P  FPNLLANG+
Sbjct: 118 VDGDNAAAMRYTEARLTETAKRLLDGLDENAIDFRETYDGEDKEPIVLPGGFPNLLANGS 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIP HN  E+CEA   LI NP+  ++ LL++I GPDFPTGG++V    SI 
Sbjct: 178 SGIAVGMATSIPPHNAHELCEACQHLIKNPDAEVDDLLQFIKGPDFPTGGLLVSDAASIR 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y  GRG FRVRA+W VE++GRG WC+V+TEIPYQVQKSRLIEKIAEL+ A+++PLL+D
Sbjct: 238 EAYATGRGSFRVRAKWEVEDLGRGQWCVVITEIPYQVQKSRLIEKIAELLTARKLPLLDD 297

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES ED+R+VL P++R++D  LLMES+F L+D+E RF LNMNVLS G+VP VM +  +
Sbjct: 298 VRDESTEDIRVVLVPRSRNVDATLLMESMFKLTDLENRFSLNMNVLSGGKVPMVMGVKQV 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+EWL HR+EVL RRS +R+  I+ R+E+L+G LIAYLN+DE+I IIR ED  K  ++  
Sbjct: 358 LREWLDHRKEVLIRRSEYRLGQINHRLEVLEGYLIAYLNLDEVIRIIREEDDAKAELIRT 417

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSLT+ Q +AILN+RLRSLRKLEE +I+ E D L  EK+++  LL S  +QW +I+ EI 
Sbjct: 418 FSLTDVQAEAILNMRLRSLRKLEELEIRKEHDKLTKEKDELTKLLGSDARQWTRISKEIA 477

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           E+ + +   T+LG+RRT   E    D   +QQAMIEKEPITV+IS +GWIR+LK H  DL
Sbjct: 478 EISKAYGPETELGKRRTEQAEAPDHDLGDIQQAMIEKEPITVIISEKGWIRALKGHQSDL 537

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S L FK+GD+LK++ HA TTD+IL+ ST GK +TL A NL  GRGHGE I+L+++++  Q
Sbjct: 538 STLSFKQGDALKLSFHAETTDKILVFSTGGKFFTLSAANLPGGRGHGEPIRLMVEMDEAQ 597

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           D+V AFV+ +  KLL+ S++   F+V E +++ANTRKGK  L +++  +  + V+  GDH
Sbjct: 598 DVVCAFVHKAGRKLLISSNEARGFVVGEDDVVANTRKGKQVLNLTAPAEATICVEADGDH 657

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAV+G+NRKLL+F + QI +M+RG+GVRLQ Y+DG I+DV  FK  +GLTW+DS+GRS+N
Sbjct: 658 VAVIGQNRKLLVFPMAQIAQMTRGRGVRLQRYRDGDIADVRVFKGEDGLTWVDSSGRSFN 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           RS  DL  W G RG  G L P GFPRS KF
Sbjct: 718 RSLEDLTDWRGDRGQAGRLPPTGFPRSNKF 747


>gi|323705856|ref|ZP_08117428.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534852|gb|EGB24631.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 812

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 423/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++    E  V  V +   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++AM+ +G
Sbjct: 1   MSDNTNNEELRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     +KKS  +VGEV+GK HPHGD +VYD++VR+AQ F  R  L+ G GNFG+IDGD 
Sbjct: 61  LTPDKPYKKSVTVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAV
Sbjct: 121 AAAMRYTEARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNLLVNGSQGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +A IDNP I+ ++L+ YI GPDFPTGG ++  ++ I E+Y  
Sbjct: 181 GMATNIPPHNLGEVIDGIIAYIDNPYIATDELMRYIKGPDFPTGG-LIVGKDGIRETYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +EE   G   IVVTE+PY V KS+L+EKIAEL+  K I  + D+RDES
Sbjct: 240 GRGKIIVRAKAEIEEHN-GRNRIVVTELPYMVIKSKLVEKIAELVRDKHIEGISDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R ++P +++  ++M + M+  F   M  L     P+++ L+ I+++++
Sbjct: 299 DRNGMRIVIELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVD-GAPKILSLNQIIEKYV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H+ +V+ RR+ F +Q  + R  IL+GL IA  +IDE+I +IR+          ++ +F 
Sbjct: 358 DHQVDVITRRTKFDLQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKNNLMDKFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AI+++RL  L  LE  +I+ EL++L  + +++ S+L+  K+  + I  E+++V
Sbjct: 418 LSDRQAQAIVDMRLGRLTGLERQKIEDELNDLYQKIKELKSILSDEKKVLDIIKKELKDV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------K 534
           K+ +S       RRT              + +++ E   V +++ G+I+ +        K
Sbjct: 478 KDKYS-----SGRRTHIVAKEDE---VDIEDLVQLEDAVVTMTHFGYIKRMPLDAYKAQK 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +S +  +E D ++      T DR+L  +  GK Y+L   ++       +  AI  
Sbjct: 530 RGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIIN 589

Query: 593 LIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI ++ ++ +        +     +++ +  G     E  +     + G T +K+   ++
Sbjct: 590 LIQIDQDEKVNAVIPIKKSHNAKYVVMCTKNGIIKKTEIDDFPKIKKSGNTAIKLDDGDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G+  + +   N   + F  D +  M R  +GV   + +D      +     +
Sbjct: 650 LINVMLTDGNREIIIGTANGFCIRFHEDNLRPMGRQARGVIAVTLRDDDYVVEMDLVDRD 709

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +  +        R G G +  K   ++GK +S
Sbjct: 710 KD-ILVVTENGYGKRSDANEYRSQTRAGKGIIAAKITKKTGKLVS 753



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/481 (13%), Positives = 146/481 (30%), Gaps = 23/481 (4%)

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + A             I+   + +QV       K       +R  +LE ++       
Sbjct: 334 AIMLALVDGAPKILSLNQIIEKYVDHQVDVITRRTKFDLQKAEERAHILEGLKIALDHID 393

Query: 310 RIVLFPKNRSLDPDLLMESI--FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            ++   ++   +P      +  F LSD + +  ++M +  +  + +   ++  L +    
Sbjct: 394 EVINVIRSSKTEPIAKNNLMDKFGLSDRQAQAIVDMRLGRLTGLERQ-KIEDELNDLYQK 452

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE-IIAIIRNEDKPKPVMVSRFSLTEN 426
            +E+    S  +      + E+              I+A     D    V +    +T  
Sbjct: 453 IKELKSILSDEKKVLDIIKKELKDVKDKYSSGRRTHIVAKEDEVDIEDLVQLEDAVVTMT 512

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
               I  + L + +  +         +   +    +    +   +      + +      
Sbjct: 513 HFGYIKRMPLDAYKAQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRT 572

Query: 487 SKSTDLGRRRT-------TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------L 533
               + GR+            +      A +           V+ +  G I+        
Sbjct: 573 IDIPESGRQAKGTAIINLIQIDQDEKVNAVIPIKKSHNAKYVVMCTKNGIIKKTEIDDFP 632

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K      +A+   +GD L   +       I++ + +G        NL         +   
Sbjct: 633 KIKKSGNTAIKLDDGDELINVMLTDGNREIIIGTANGFCIRFHEDNLRPMGRQARGVI-A 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           + L  +  +V   + D    +LVV+  G     + +E  + TR GK  +         K+
Sbjct: 692 VTLRDDDYVVEMDLVDRDKDILVVTENGYGKRSDANEYRSQTRAGKGIIAAKITKKTGKL 751

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             ++ V+  D + ++  N  L+   I  I +M R   GV L    +G           + 
Sbjct: 752 VSIMSVSEKDELMIISANGILIRTKIADISKMHRDTTGVMLMKLDEGDRVVSTARIANDE 811

Query: 709 L 709
            
Sbjct: 812 E 812


>gi|299140968|ref|ZP_07034106.1| DNA gyrase, A subunit [Prevotella oris C735]
 gi|298577934|gb|EFI49802.1| DNA gyrase, A subunit [Prevotella oris C735]
          Length = 867

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/772 (29%), Positives = 392/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDNDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG+IDGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDASVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN++E+ +   A IDNP+I ++ L++YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLREVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIY-GIQGVRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E       IVVTEIPY V K  LIE IA+L+   RI  + +  DES
Sbjct: 240 GRGRIVMRAKAEI-ESDESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVIDVKRDANANVILNKLFKMTALQSSFSVNCIALVK-GRPRLLSLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P     +   RF+
Sbjct: 358 EHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERFN 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L  +      +L+  +     +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYFQQILDDPELCKKVMKDELNEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           K+ +        RRT   E+  + +    +     +P+ + +S+ G+I+           
Sbjct: 478 KDKYGDE-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFHEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       +E D  +    A     +L  +  G+ Y L    +  G  + +  AIQ 
Sbjct: 530 RGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++++  +  I            +++++  ++  +  G                G   + +
Sbjct: 590 MLNIESDDAINAILRLTTLTDEIFNNSHYVIFATKNGTVKKTSLEAYSRPRANGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDV 700
           +  +++  V    G + + +   N + + F+ + I  M R   GVR       D  +  +
Sbjct: 650 ADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTMGRTATGVRGMRLDGGDDEVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     E  T +  + + Y +        +  RGG G        ++G+ +S
Sbjct: 710 VTVNEAETETVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTGRLVS 761



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/285 (10%), Positives = 93/285 (32%), Gaps = 16/285 (5%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             + +  +           +  +        +   I   +         + +   R TT 
Sbjct: 552 ATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKGRAIQNML---NIESDDAINAILRLTTL 608

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +    +   +       +  TV  ++       +++   + A++  +GD +      + 
Sbjct: 609 TDEIFNNSHYVI---FATKNGTVKKTSLEAYSRPRAN--GVIAINIADGDEVVDVRLTNG 663

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVV 617
            + +++ + +G+A       + +       ++ +     + ++V     +   T  ++VV
Sbjct: 664 RNELIMANRNGRAVRFNENTIRTMGRTATGVRGMRLDGGDDEVVGMVTVNEAETETVMVV 723

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVV-KVTGDHVAVVGENRKLLIF 673
           S +G     +  +     R GK    +       ++  +      + + ++ ++  ++  
Sbjct: 724 SEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTGRLVSIKNVTDENDLMIINKSGIVIRL 783

Query: 674 SIDQIPEMSRG-KGVRLQSY-KDGGISDVICFKICEGLTWIDSAG 716
            +  +  M R  +GVRL +  K   +   +C  +   L       
Sbjct: 784 VVADVRVMGRATQGVRLINLAKKNDVIASVCKVMSSELEATVEEE 828


>gi|90021793|ref|YP_527620.1| DNA gyrase subunit A [Saccharophagus degradans 2-40]
 gi|89951393|gb|ABD81408.1| DNA gyrase subunit A [Saccharophagus degradans 2-40]
          Length = 886

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/795 (31%), Positives = 411/795 (51%), Gaps = 65/795 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  A+
Sbjct: 4   IAKEILPVTIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM +++  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMAKISHELLADLDKETVDFVPNYDGTELIPAVLPTRVPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+ +  LALIDNPEI+I++L+E+I GPDFPTG  I+  R  I+++YR GRG   V
Sbjct: 184 PHNLREVIKGCLALIDNPEITIDELMEHIPGPDFPTGA-IINGRAGILQAYRTGRGRIYV 242

Query: 253 RARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA+  VE     G   IV+ EIPYQV K+RLIEKIAEL+  K+I  + +IRDES +D   
Sbjct: 243 RAQAEVETNEKTGRETIVINEIPYQVNKARLIEKIAELVKEKKIEGISEIRDESDKDGLR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R    ++++ +++  + ++  F +N+  L     P+++ L  +L+ ++ HRREV
Sbjct: 303 VVVEIKRGEMGEVVLNNLYAQTQLQNVFGINIVALVDD-QPKLLNLKELLEYFVKHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------- 420
           + RR+ + ++    R  +L+G  +A  NIDE+I +I++   P     +            
Sbjct: 362 VTRRTVYLLRKARERGHVLEGQAVAIANIDEVITLIKSSPTPADARDAMLARGWPVGAVS 421

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+  QV AIL+LRL  L  +E  ++ +E + 
Sbjct: 422 EFLDRAGENACRPDGLPEEFGLREDGSYYLSPVQVQAILDLRLHRLTGMEHDKLLAEYEE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
            L +      +L + ++  N I  E+  +   +        RRT      ++      + 
Sbjct: 482 KLIQIAGYLEILGNPERLMNVIREELEVIYNDYGDE-----RRTVI---QQSMTDLTHED 533

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+ +S    +           +A   K+ D ++  L A+T D +L 
Sbjct: 534 LISEEDRVVTISHGGYAKSQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYLLC 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            ++ GK + L    +     +  G  +  L+ L   + I +      +D    + + ++ 
Sbjct: 594 FTSVGKVFWLKVYQIPVAGRQSRGRPVVNLLPLEEGERITSILPVREFDDDHFIFMATAD 653

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679
           G       S+       G   + +   + +       G   + ++    K   FS + + 
Sbjct: 654 GTVKKTPLSQFARPRSVGLRAIDLVEGDHLVGTAITDGTKDIILLTSAGKAARFSEENVR 713

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR     D  +S +      EG   +  +   + +           RG  G 
Sbjct: 714 SMGRVSRGVRGVRMAD-DVSVIAMVVPEEGGKVLTVSENGFGKRTEVTEYPAKGRGSQGV 772

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+G  + +
Sbjct: 773 IAMQMSERNGCLVGA 787



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 81/213 (38%), Gaps = 10/213 (4%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             + G R T+   V   D        +     TV  +        +  SV L A+   EG
Sbjct: 625 PLEEGERITSILPVREFDDDHFI--FMATADGTVKKTPLSQFARPR--SVGLRAIDLVEG 680

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L        T  I+LL++ GKA      N+ S       ++  + +  +  ++   V 
Sbjct: 681 DHLVGTAITDGTKDIILLTSAGKAARFSEENVRSMGRVSRGVRG-VRMADDVSVIAMVVP 739

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKV-TGDHVAVV 664
           +   K+L VS  G     E +E  A  R   G   +++S     +    +V  GD + ++
Sbjct: 740 EEGGKVLTVSENGFGKRTEVTEYPAKGRGSQGVIAMQMSERNGCLVGATQVFEGDEIMLI 799

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
                L+    D++    R  +GVRL   K+G 
Sbjct: 800 SNQGTLVRTRADEVSLSGRNTQGVRLIRVKEGE 832


>gi|325928151|ref|ZP_08189360.1| DNA gyrase subunit A [Xanthomonas perforans 91-118]
 gi|325541447|gb|EGD12980.1| DNA gyrase subunit A [Xanthomonas perforans 91-118]
          Length = 900

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/819 (31%), Positives = 386/819 (47%), Gaps = 80/819 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     A+
Sbjct: 4   TAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYT
Sbjct: 64  FKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP
Sbjct: 124 ESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALID PE+ +E L+EYI GPDFPT G I+     I   YR GRG  R+
Sbjct: 184 PHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAG-IINGTAGIAAGYRTGRGRVRI 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  VE    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME  F +NM  L     PQ+M L  +L+ ++ HRREV+
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALID-GRPQLMNLKQMLEAFIRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P+                  
Sbjct: 362 TRRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGA 421

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + L+E Q   IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
              E +  +L +       +  E+  ++E +        R +          A     + 
Sbjct: 482 GVIEGLIRILENPDVLLQVVRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ +      SA   KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
           P   L        G  I   I L   + +        Y     +   +  G       SE
Sbjct: 602 PVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    GD  V +   N K + F    +  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVR 721

Query: 689 LQSYKDGGIS-------------------------------DVICFKICEG---LTWIDS 714
                 G                                  +    ++ +       + +
Sbjct: 722 GIRLTKGEEVVSLIVAERAGGVEEEIEGEEVDDVVEATDGGESAVIEVADDGNVAYILTA 781

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+GK + +
Sbjct: 782 TENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 8/113 (7%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGEN 667
             +L  +  G       +E     R  +  + +     + + ++ V+    D V ++ + 
Sbjct: 776 AYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGATDEVLLISDG 835

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC---FKICEGLTWIDSAG 716
             L+     +I  + R  +GV L     G     +      + E    +D AG
Sbjct: 836 GTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVDEVVDEAG 888


>gi|50085721|ref|YP_047231.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp.
           ADP1]
 gi|49531697|emb|CAG69409.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp.
           ADP1]
          Length = 909

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/826 (30%), Positives = 407/826 (49%), Gaps = 94/826 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RMT++   +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMTKLTHELLADLEKDTVDWVDNYDGSERIPDVLPTRIPNLLINGAAGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             H++ E+  A LA  DNP ISIE L+E+I GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHHLNEVIHACLAYADNPNISIEGLMEHITGPDFPTGG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES +D  
Sbjct: 240 IRGKYHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F+ + +E  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVIVNNLFLNTQLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------- 417
           V+ RR+ F ++    R  IL+GL +A  NID+II  I+    P                 
Sbjct: 359 VVTRRTMFELRKARERGHILEGLTVALANIDDIIETIKTSANPAEARERLQAGEWAGGGV 418

Query: 418 -----------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV AIL LRL  L  LE+ ++ 
Sbjct: 419 IALLEKAGSVSVRPDEIEGEDPARPFGLSEQVYRLSPTQVAAILELRLHRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN        I  E+  + + +        RRT   E   +   
Sbjct: 479 AEYTEILGQIAELTAILNDFNLLMGVIREELSLILQQYGDE-----RRTQIVE---SRID 530

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+         ++ +      SA   K+ D ++  + A   
Sbjct: 531 FCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             +L  +  GK Y L    +       +   +  L+ L+ N+ I        +     + 
Sbjct: 591 ATVLCFTNVGKVYRLKVFEVPQASRGAKGRPMVNLLPLDANESITAILPLTEFLENHYVF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
           + ++ G    VE  +       G   ++++ E+ +  V    G   + +     K + F+
Sbjct: 651 MATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGQQQIMLFSNEGKAIRFA 710

Query: 675 IDQIPEMSR-GKGVRLQS-------------YKDGGISD-------------VICFKICE 707
              +  M R  KGVR                     + D             V    + E
Sbjct: 711 ETDVRAMGRTAKGVRGMRVTLAAAVDSEDTELDHDELDDSEESTDSSVVSRIVSLVVVPE 770

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 771 TGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 816



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT 657
            IV+  V   T ++L  S+ G       ++     R GK  + + + E   ++   V + 
Sbjct: 761 RIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSID 820

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDS 714
           G   + ++ +   L+     ++    R  +GVRL    D   +  V+  +  E   +I+ 
Sbjct: 821 GTKELMLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSDAETLVGVVSIEAVEDDEFIEV 880

Query: 715 AG 716
             
Sbjct: 881 VE 882


>gi|319792463|ref|YP_004154103.1| DNA gyrase, a subunit [Variovorax paradoxus EPS]
 gi|315594926|gb|ADU35992.1| DNA gyrase, A subunit [Variovorax paradoxus EPS]
          Length = 881

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/800 (31%), Positives = 394/800 (49%), Gaps = 71/800 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VRLAQ F  R+ L+ GQGNFG++DGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF+D Y+  + EP V PS+ PNLL NG+ GIAVGMAT+IP HN+ E
Sbjct: 130 IAHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+ NP+ +I++L+E +  PDFPT G I+     + + YR GRG   +RA+   
Sbjct: 190 VVDACLHLLRNPQATIDELMEIVPAPDFPTAG-IIYGINGVKDGYRTGRGKVVMRAKCHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P++  L  +++ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKQTQLQDTFGINMVALV-NGQPKLCNLKDLIEVFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-------------------------- 411
           F ++    R  +L+GL +A  NIDE I IIR                             
Sbjct: 368 FTLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLTRS 427

Query: 412 -------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                              +        + L+E Q   IL +RL+ L  LE+ +I +E  
Sbjct: 428 RADGGVINADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           +++AE + +  +L   ++    I  E+  +K+ F +S    RR         +      +
Sbjct: 488 DVMAEIDDLLDILAKPERVSVIIGDELGTIKQEFGQSKLGARRSLVE----HSAFDLSTE 543

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I    + V +S+ G+         R+ K       A   KE D +     A+T D IL
Sbjct: 544 DLITPTDMVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYIL 603

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTCKLL 615
             S  G+ Y L    +   S    G  I  +  L   + I  A         + +   + 
Sbjct: 604 CFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQYVF 663

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFS 674
           + +S G        E     + G   + +   + +       G H V +  +  K + F+
Sbjct: 664 MSTSMGTVKKTALDEFNNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSDGGKAVRFA 723

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            D +  + R  +GVR  S   G     +     E  + + +    Y +  +        R
Sbjct: 724 EDDVRPLGRNARGVRGMSLDPGQGVIAMLVAEDEQQSVLTATENGYGKRTSITEYTRHGR 783

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
           G  G +  +   R+GK +++
Sbjct: 784 GTKGMIAIQQSERNGKVVAA 803



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 81/263 (30%), Gaps = 16/263 (6%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G +   
Sbjct: 595 IANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMF---------PLQEGEKINV 645

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++   +       +        +               + A++  +GD L  A    
Sbjct: 646 ALALTGEKRNFPADQYVFMSTSMGTVKKTALDEFNNPRKGGIIAVNLDDGDYLIGAALTD 705

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVV 617
               ++L S  GKA    A + +   G        + L+  Q ++   V +   + +L  
Sbjct: 706 GKHDVMLFSDGGKAVRF-AEDDVRPLGRNARGVRGMSLDPGQGVIAMLVAEDEQQSVLTA 764

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIF 673
           +  G       +E   + R  K  + +   E+   VV  T     D + ++ +   L+  
Sbjct: 765 TENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDKGVLVRT 824

Query: 674 SIDQIPEMSRG-KGVRLQSYKDG 695
            + +I E+ R  +GV L    +G
Sbjct: 825 RVAEIRELGRATQGVTLIGLDEG 847


>gi|170693711|ref|ZP_02884869.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M]
 gi|170141493|gb|EDT09663.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M]
          Length = 868

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/782 (30%), Positives = 378/782 (48%), Gaps = 56/782 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NPE +I++L+E +  PDFPT G I+     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLKNPEATIDELIEIVPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  +L  +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------------------ 414
            R  +L+GL +A  NIDE IAII+    P                               
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAEQENASA 418

Query: 415 ----------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGREAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  +K  F  +             +       +  +    
Sbjct: 479 ADLLDILARPERITAIIVDELTSIKSEFGDARRSKIELNATELNTEDLITPQEMVVTMSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ K       A   KE D +     A+T D IL  S  G+ Y +   
Sbjct: 539 AGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVY 598

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G  I  +  L   + I        + +   + + ++ G            
Sbjct: 599 EVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMATALGTVKKTPLEAFSR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             RKG   + +   + +       G H V +  ++ K + F  + +  M R  +GVR   
Sbjct: 659 PLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQ 718

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +G     +     E  + + +    + +           RG  G +  +   R+G+ +
Sbjct: 719 LDEGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGRVV 778

Query: 752 SS 753
           ++
Sbjct: 779 AA 780



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +    
Sbjct: 662 KGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLDE 721

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
               I      D    +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 722 GQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 781

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V  +  + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 782 LVDQEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEG 824


>gi|295694694|ref|YP_003587932.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912]
 gi|295410296|gb|ADG04788.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912]
          Length = 810

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/747 (31%), Positives = 391/747 (52%), Gaps = 13/747 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V +   L + +L YA+S I  RAIPD+RDG KPVHRRI++ M  +G+     +KKS
Sbjct: 6   KILPVDISEELRQSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYQMHLLGMTPDKPYKKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG+V+ K HPHGD +VYD+LVRLAQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 66  AWVVGQVLAKFHPHGDAAVYDALVRLAQDFSTRYLLVDGHGNFGSVDGDGAAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L+ + ++ VDF D Y+  + EP+V PS+FPN+L NG++GIAVGMAT+IP HN
Sbjct: 126 LSKIALELLRDIQKETVDFGDNYDGSEKEPLVLPSRFPNILVNGSTGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LID+P+  +E+L+++I GPDFPTG  ++  RE I+++YR GRG   +RA 
Sbjct: 186 LGEVIDGVIHLIDHPDAGVEELMQHIKGPDFPTGA-LILGREGILDAYRTGRGSIILRAA 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   IVVTEIPYQV K+RL+EKIAEL+  KRI  + D+RDES      ++  
Sbjct: 245 TQIEEASGGKTRIVVTEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRRGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R + P +++ ++F  + ++T + + M  L     P+V+ L  +L+ +L H+ +V+ RR
Sbjct: 305 LRRDVKPRVVLNNLFKHTALQTSYGVIMLCLVD-GRPRVLNLGEMLRYYLRHQEDVIRRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAIL 432
           +++ ++  + R  IL+GL IA  +ID +I +IR     +        +F L+E Q  AIL
Sbjct: 364 TTYDLKKAEARAHILEGLRIALDHIDAVIELIRGSKTVEEARTGLIEQFHLSEEQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I  E   L+ + +++ ++L   K+    I  E+ ++K  +      
Sbjct: 424 DMRLQRLTGLERQKIDEEYAELVEKIKELRAILADEKKILGVIREELLDIKAKYGDERRT 483

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                             + A+       +        +S +     ++A+  KE D ++
Sbjct: 484 RITAGEGEIEDEDLIPMEEVAVTLSHDGYIKRQPMSLYKSQRRGGRGITAMGTKEEDFVE 543

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV--- 607
                 +   +L  +  GK Y L A  +       +   I  L++++  + I        
Sbjct: 544 HLFITSSHHYLLFFTNKGKVYRLKAYEVPELGRAAKGTPIVNLLNVDQGEKISAVVPIRS 603

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGE 666
            D    L++ + +G        E     R G   + +   +++  V    G   + +   
Sbjct: 604 TDGGQYLIMATREGTIKKTPLDEFENIRRGGLVAISLRENDELIAVRMTDGSRELILGTR 663

Query: 667 NRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +   + F    +  M RG  GV+    + G +   +     +G   +    R + +    
Sbjct: 664 SGMAIRFPETDVRSMGRGAAGVKAVDLQGGDVVIDMDVVDPDGD-VLVVTNRGFGKRTPI 722

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  RGG G        R+G  +S
Sbjct: 723 TEYRHQSRGGKGIRTLHVTARTGSVVS 749



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 67/176 (38%), Gaps = 6/176 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A+  +E D L        +  ++L +  G A   P  ++ S      A    +DL  
Sbjct: 634 GLVAISLRENDELIAVRMTDGSRELILGTRSGMAIRFPETDVRSMGRGA-AGVKAVDLQG 692

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656
              ++   V D    +LVV+++G       +E    +R GK    +    +   VV +  
Sbjct: 693 GDVVIDMDVVDPDGDVLVVTNRGFGKRTPITEYRHQSRGGKGIRTLHVTARTGSVVSLKM 752

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
               + V V+      +   +D+I    R  +GV+L + K+      +   +C G 
Sbjct: 753 VRNDEDVMVITTTGIAIRMHVDEISVQGRNTQGVKLITLKEDEEVSTVAKVVCAGE 808


>gi|209884981|ref|YP_002288838.1| DNA topoisomerase IV, A subunit [Oligotropha carboxidovorans OM5]
 gi|209873177|gb|ACI92973.1| DNA topoisomerase IV, A subunit [Oligotropha carboxidovorans OM5]
          Length = 751

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/740 (55%), Positives = 545/740 (73%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               ++V+ V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD  +
Sbjct: 7   PPEPQDVQEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPSS 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSA+IVG+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AA R
Sbjct: 67  PFKKSAKIVGDVMGGFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAMR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+T VA L+L+G+DEDAV+FR +Y+  D EP V P  FPNLLANG  GIAVGMAT+
Sbjct: 127 YTESRLTDVARLLLEGLDEDAVEFRPSYDGSDKEPTVLPGGFPNLLANGAQGIAVGMATA 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+C+AAL LI  P    + LL Y+ GPDFPTGGI+V+ +ESI E+Y  GRG F
Sbjct: 187 IPPHNAAELCDAALHLIAKPATKTQGLLRYVKGPDFPTGGIVVDGQESIAEAYNTGRGAF 246

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RVRA+W  E+  RG+W IVVTEIP+ VQKSRLIE+IAEL+  K++ L+ DIRDESAED+R
Sbjct: 247 RVRAKWHQEDGARGTWHIVVTEIPWLVQKSRLIERIAELLNEKKLHLVGDIRDESAEDIR 306

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+ PK++++DP++LME++F  +D+E+R PLN+NVL  GRVP+V+ L   L+EWL H R+
Sbjct: 307 IVIEPKSKNVDPEVLMETLFKQTDLESRIPLNLNVLVKGRVPKVLGLAECLREWLDHLRD 366

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RRS+ R   I+ R+E+L G LIAYLN+D++I IIR ED+PKPV++  F LT+ Q D+
Sbjct: 367 VLVRRSNHRKNQIEHRLEVLGGYLIAYLNLDKVIKIIRTEDEPKPVLIRTFKLTDLQADS 426

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ILN+RLR+LRKLEE +I+ E  NL  E + I ++L S ++QW +++ ++++V+++F   T
Sbjct: 427 ILNMRLRNLRKLEEMEIRGEDKNLRTELKGIKAVLASEEEQWKKVSEQVKKVRDLFGPKT 486

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            LG+RRT F      D ATL++A +E+EPITVV+S++GW+R+LK H  DLS L FK  D 
Sbjct: 487 PLGKRRTQFANAPEHDLATLEEAFVEREPITVVVSDKGWVRTLKGHVEDLSNLTFKTDDR 546

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L I+  A TT ++LLL T G+ YTL A  L  GRGHG+ I+  IDL  + +IV+ FV   
Sbjct: 547 LGISFFAETTSKLLLLGTHGRFYTLDAQKLPGGRGHGDPIRSFIDLEGDANIVSLFVNTG 606

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
             K L+ S  G  F+V E + + NTRKGK  + V+   ++  +  V GD VAV+GENRK+
Sbjct: 607 GRKFLIASHDGQGFVVNEDDCVGNTRKGKQVMNVTMPNEVAAIATVEGDTVAVIGENRKM 666

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           LIF ++Q+PEM+RG+GVRLQ YKDGG+SDV  F   EGLTW DSAGR ++ S  +L  W 
Sbjct: 667 LIFPLEQVPEMARGRGVRLQRYKDGGLSDVTTFTAKEGLTWRDSAGREFSASWKELSDWR 726

Query: 731 GKRGGVGSLVPKGFPRSGKF 750
           G R   G L PKGFP+S KF
Sbjct: 727 GNRADAGRLPPKGFPKSNKF 746


>gi|227498780|ref|ZP_03928920.1| type IIA topoisomerase [Acidaminococcus sp. D21]
 gi|226904232|gb|EEH90150.1| type IIA topoisomerase [Acidaminococcus sp. D21]
          Length = 838

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/780 (32%), Positives = 397/780 (50%), Gaps = 39/780 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D  +   T+    V  V +   +++ Y+ YA+S I +RA+PD+RDG KPVHRRI++AM+
Sbjct: 2   DDQQNEGQTITAGKVIPVYVEEEMQKSYIDYAMSVIVQRALPDVRDGLKPVHRRILYAMN 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G+    A+KKSARIVG+V+GK HPHGD SVYD++VRLAQ F  RY ++ G GNFG+ID
Sbjct: 62  EAGMLPNKAYKKSARIVGDVLGKYHPHGDFSVYDAIVRLAQDFSTRYLMVDGHGNFGSID 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE RM ++A  +L+ +++D VDF   Y+E   EP V PSK P LL NG++G
Sbjct: 122 GDPPAAMRYTEVRMGKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPSKVPALLINGSAG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A + LID+P+ +IE L+  I GPDFPTG  I+     I ++
Sbjct: 182 IAVGMATNIPPHNLGEVVDALVMLIDHPDATIEDLMGAIKGPDFPTGAQIL-GVSGIRQA 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG  +VRA+  VE + +    IVVTEIPYQV K+RLIE IA L+  K +  + D+R
Sbjct: 241 YTTGRGVVKVRAKAHVEPMPKNKNRIVVTEIPYQVNKARLIESIAHLVQDKTLEGITDLR 300

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      ++      + P++++  ++  + M+  F +    L     P+++ L  IL 
Sbjct: 301 DESDRKGMRIVIELRSDIIPEIMLNKLYKHTQMQESFGIIQLALVK-GHPRILNLKEILV 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L H++EV+ R++ + +     R  IL GL IA  ++DE+IA IR+       +  ++S
Sbjct: 360 YYLEHQKEVITRKTRYELNKAKERAHILAGLKIALDHLDEVIATIRSSATAEIARASLIS 419

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F L+E Q  AIL++RL+ L  LE  +I+ E   ++A    ++S+L    +       + 
Sbjct: 420 KFGLSEKQAQAILDMRLQRLTGLERKKIEDEYTEVMATIAYLESVLADEHKIMGIAKDDF 479

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------ 533
            +VK+ F        RRT+    +        + +I +E I + IS++ +I+        
Sbjct: 480 LDVKKRFGDP-----RRTSIVPDAGE---IDAEDLIAEEDIVITISHQSYIKRQALTNFR 531

Query: 534 ----------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                           +   +   GD  +  L A T D IL  +  G+ Y      +   
Sbjct: 532 NQNRGGRGVKAGSGKIVKEDNKVTGDFSEHLLLASTHDNILFFTNQGRVYRQKGYEIPEA 591

Query: 584 RGHGEAIQ--LLIDLNHNQDIVTAFVY------DSTCKLLVVSSKGNAFIVEESEIIANT 635
               +      L+ L  N+ I            D    L + ++KG       SE     
Sbjct: 592 GRQAKGTFIRNLLPLVENEKITAIIAVKTGISEDENKFLFMATNKGVIKKTSVSEFKTAR 651

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK 693
           R G   + +  +E +  V   +G H + +   +   + F+   +  M R   GVR  + +
Sbjct: 652 RAGLIAINLDDDEDLIDVKLTSGHHDILLATRDGYAIRFNESDVRPMGRTAHGVRGITLR 711

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +   +     +    +        +  +     L  RGG G +  K   ++G  + S
Sbjct: 712 HHDVLVSMDSCEGDSGEVLTVTEGGLGKRTDISEYRLQTRGGKGIINLKVTNKTGDIVGS 771



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 62/189 (32%), Gaps = 7/189 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           VI          +    L A++  + + L           ILL + DG A      ++  
Sbjct: 638 VIKKTSVSEFKTARRAGLIAINLDDDEDLIDVKLTSGHHDILLATRDGYAIRFNESDVRP 697

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                      I L H+  +V+    +    ++L V+  G     + SE    TR GK  
Sbjct: 698 MGRTA-HGVRGITLRHHDVLVSMDSCEGDSGEVLTVTEGGLGKRTDISEYRLQTRGGKGI 756

Query: 642 LKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           + +     + + +   +      + ++     ++      I   SR  +GV++   + G 
Sbjct: 757 INLKVTNKTGDIVGSKLVNDHHDILLISAAGIIIRMKASDISSYSRNAQGVKMMDLEKGD 816

Query: 697 ISDVICFKI 705
               +    
Sbjct: 817 KVAALAIVD 825


>gi|319408644|emb|CBI82299.1| topoisomerase IV subunit A [Bartonella schoenbuchensis R1]
          Length = 749

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/742 (61%), Positives = 591/742 (79%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S    +E ++ V L  AL+ERYLAYALSTI  RA+PD+RDG KPVHRRIIHAM  + L+ 
Sbjct: 6   SQPFDKECIEPVELCSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLKLNP 65

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           G ++ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA
Sbjct: 66  GQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAA 125

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT+VA L+L+G++ED++DFR TYNEED EPVV P  FPNLLANG+SGIAVGMA
Sbjct: 126 MRYTEARMTEVAALLLEGINEDSIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HNV E+C+AAL LI +P  + E L ++++GPDFPTGGI+VE ++SI ESYR GRG
Sbjct: 186 TSIPPHNVAELCDAALHLIAHPNANNEDLNKFVLGPDFPTGGILVEPKKSIEESYRTGRG 245

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            FR+R+RW  E+  RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI DESAED
Sbjct: 246 LFRLRSRWHQEQSSRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDESAED 305

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIVL PKNR++D +LLMES+F L+D E RFPLN+NVL++G+VP V+ L   L++WL HR
Sbjct: 306 IRIVLVPKNRTVDAELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQWLEHR 365

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           +EVL RRSS+R+  I+RR+EIL G LIAYLN+D++I I+R ED+PK  ++  F LT+NQ 
Sbjct: 366 KEVLVRRSSYRLNEINRRLEILNGYLIAYLNLDKVIQILREEDEPKKELIEHFKLTDNQA 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AILN+RLRSLRKLEE++I+ E ++L  E+ ++ +LL S  +QW  I+ EI +V++IF  
Sbjct: 426 EAILNMRLRSLRKLEEFEIRKEFESLKTEEAQLQALLASNIKQWKMISDEITKVRKIFGP 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
            T LG+RRTTF +  + D   +QQAMIE+EP+T++IS +GW+R+LK H  D   L FKEG
Sbjct: 486 ETILGKRRTTFEDAPKHDVNDIQQAMIEREPVTIIISEKGWMRALKGHLNDYKMLSFKEG 545

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D LK+AL A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D++   DI+TAFV+
Sbjct: 546 DCLKLALPAFTTDKIVVVSTGGKFFTIGANVLPGGRGHGEPIRILVDMDGEHDILTAFVH 605

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++  K L+VS+ GN FIV E+E+IANTRKGK  + V S +K+KL V V GD+VAVVGENR
Sbjct: 606 NAQEKRLLVSAYGNGFIVSENEVIANTRKGKQIMHVKSPDKVKLCVPVNGDYVAVVGENR 665

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           KLLIF+I+QIPEMSRGKGVRLQ YKDGG+ D   F + EGL+W D+A RS+NR  ++L+ 
Sbjct: 666 KLLIFAIEQIPEMSRGKGVRLQRYKDGGVVDAKTFNLSEGLSWQDTAERSFNRQSDELIE 725

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
           W+G R GVG LVPKGFP+SGKF
Sbjct: 726 WMGTRAGVGRLVPKGFPKSGKF 747


>gi|213417579|ref|ZP_03350721.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 817

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/801 (33%), Positives = 406/801 (50%), Gaps = 68/801 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F        RRT   E++    
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSA 526

Query: 508 ATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S++G+          + +      SA   KE D +   L A+T
Sbjct: 527 DINIEDLISQENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANT 586

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        Y+    +
Sbjct: 587 HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNV 646

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
            + ++ G       +E       G   + ++  +++  V   +G D V +     K++ F
Sbjct: 647 FMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRF 706

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
             D +  M R   GVR            +     EG   +      Y +           
Sbjct: 707 KEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKS 765

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           R   G +  K   R+G  + +
Sbjct: 766 RATQGVISIKVTERNGSVVGA 786



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 90/336 (26%), Gaps = 21/336 (6%)

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  +++E +   R+         + A    + I   +    + +              
Sbjct: 496 DRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSHQGYVKYQPLT 555

Query: 415 PVMVSRFSLTENQVDAILNLRLR---SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                R          I          +    +  +       L   +       S   +
Sbjct: 556 DYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGAR 615

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I   +           +   R T    V   ++                +       
Sbjct: 616 GRPIVNLL---------PLEANERITAILPVREYEEGVNVFMATASG----TVKKTALTE 662

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
             +  S  + A++  +GD L        +D ++L S  GK       + +   G      
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFK-EDAVRAMGRTATGV 721

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EE 648
             I L  +  +V+  +      +L V+  G        E    +R   G   +KV+    
Sbjct: 722 RGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNG 781

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
            +   V+V   D + ++ +   L+   + +I  + R
Sbjct: 782 SVVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVGR 817


>gi|89900363|ref|YP_522834.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118]
 gi|89345100|gb|ABD69303.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118]
          Length = 880

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/804 (30%), Positives = 387/804 (48%), Gaps = 63/804 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    VSL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGDQSVYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP+V P++ PNLL NG+ GIAVGMAT+
Sbjct: 122 YTEIRLSKIAHELLADLDKETVDFGPNYDGSEKEPLVLPTRLPNLLVNGSGGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+ NPE SI++L+E I  PDFPT G I+   + + + YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLLRNPEASIDELMEIIPAPDFPTAG-IIYGIQGVKDGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKVHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L     P++  L  ++K +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALID-GQPKLCNLKDLIKVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------- 412
           EV+ RR+ F ++    R  +L+GL +A  NIDE IAIIRN                    
Sbjct: 360 EVVTRRTVFNLRKARERGHVLEGLAVALANIDEFIAIIRNAPTPPVAKVELMAKPWDSKL 419

Query: 413 ----------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                               + L++ Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRADGGVINADDYRPDGLEKMYGMGSDGLYRLSDTQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR----RTTFC 500
            +I +E   ++ E E +  +L   ++    I  E+  +K  F ++    RR     ++F 
Sbjct: 480 DKIVAEYKEVMGEIEDLLDILAKSERVSTIIYEELTAIKTEFGQTKLGARRSLVEHSSFD 539

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             +          +       +        R+ K       A   KE D +     A+T 
Sbjct: 540 LSTEDLITPTDMVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTH 599

Query: 561 DRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------YDST 611
           D IL  S  G+ Y L    +        G  I  +  L   + I            + + 
Sbjct: 600 DYILCFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKINVVLALTGEKRSFPAD 659

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKL 670
             + + +S G        E     + G   + +   + +       G H V +  +  K 
Sbjct: 660 QYVFMATSMGTVKKTPLDEFSNPRKGGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKA 719

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           + F  + +  M R  +GVR    +DG     +     E  + + +    Y +  +     
Sbjct: 720 VRFDENDVRPMGRNARGVRGMMLEDGQGVIAMLVAEDELQSVLTATVNGYGKRTSITEYT 779

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              RG  G +      R+GK +++
Sbjct: 780 RHGRGTKGMIAITQSERNGKVVAA 803



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 7/145 (4%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST-CKLL 615
                 ++L S  GKA      ++     +   ++ ++ L   Q ++   V +     +L
Sbjct: 704 TDGKHDVMLFSDGGKAVRFDENDVRPMGRNARGVRGMM-LEDGQGVIAMLVAEDELQSVL 762

Query: 616 VVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKV-TGDHVAVVGENRKLL 671
             +  G       +E   + R  KG   +  S    K+     V   D + ++ +   L+
Sbjct: 763 TATVNGYGKRTSITEYTRHGRGTKGMIAITQSERNGKVVAATLVHADDEIMLITDKGVLV 822

Query: 672 IFSIDQIPEMSRG-KGVRLQSYKDG 695
              + +I E+ R  +GV L    +G
Sbjct: 823 RTRVSEIRELGRATQGVTLIGLDEG 847


>gi|254481894|ref|ZP_05095137.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148]
 gi|214038023|gb|EEB78687.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148]
          Length = 886

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/794 (31%), Positives = 402/794 (50%), Gaps = 64/794 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   +++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  A+
Sbjct: 4   LAKEILPVNIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY ++ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYLMVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM +++  +L  +D++ VDF D Y+  +  P V P++ P LL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMKKISHQMLADLDKETVDFVDNYDGTERIPAVLPTRVPTLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LAL+ +P++++++L+E+I GPDFPTG  I+  R  I+++YR GRG   V
Sbjct: 184 PHNLTEVVSGCLALLGDPDLTVDELMEHIPGPDFPTGA-IINGRAGIIQAYRTGRGRIYV 242

Query: 253 RARWC-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR   + +  RG   I+V EIPYQ+ K++LIE+IAEL+  K+I  + ++RDES +D   
Sbjct: 243 RARAEVIHDEKRGKDIIIVHEIPYQLNKAKLIERIAELVKEKKIEGITELRDESDKDGLR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R    D+++ +++  + +++ F +NM  L     P+++ L  IL+ ++ HRREV
Sbjct: 303 VVIELRRGEVGDVVLNNLYAQTQLQSVFGINMVALVD-GQPKILNLKEILEAFVRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419
           + RR+ + ++    R  +L+GL IA  NID +I +I+                       
Sbjct: 362 VTRRTVYLLRKARERGHLLEGLAIALANIDPVIELIKASPSSAEAKEKLIARSWRPGDVT 421

Query: 420 -------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+  Q  AIL LRL  L  LE  ++ +E +  
Sbjct: 422 GMLERAGDDACRPDELDPQFGLRDGLYYLSPAQAQAILELRLHRLTGLEHEKLLNEYEEK 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L E  +   +L+   +    I  E+ E+   +        RRT   E++ +      + +
Sbjct: 482 LREIAEYLEILSDADRLKAVIREELEEIVTEYGDE-----RRT---EITASQHDLTVEDL 533

Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I +E   V IS+ G+         ++ +   +  SA   K+ D ++  L A T   IL  
Sbjct: 534 ITEEDRVVTISHGGYAKTQPLTDYQAQRRGGMGKSATAVKDEDFVEHLLIASTHATILCF 593

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKG 621
           S  GK Y L    +        G  +  L+ L   + + +    +       + + ++ G
Sbjct: 594 SNLGKVYWLKVYQIPLAGRNSRGRPMINLLPLEEGERVTSILPVEDYTEGHYIFMATASG 653

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
                           G   L++   + +      TGD  V ++    K + F    +  
Sbjct: 654 TVKKTALINFARQRSVGLRALELEEGDVLVGTAVTTGDCDVMLLSSEGKAVRFKEGDVRA 713

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           M R  +GVR     DG    +      EG   +  +   Y +           RG  G +
Sbjct: 714 MGRTARGVRGIKLGDGHEM-ISLIIPREGGRVLTVSENGYGKRTEMSEFPTKGRGTKGVI 772

Query: 740 VPKGFPRSGKFLSS 753
             +   R+G  + +
Sbjct: 773 AMQTSERNGTLVGA 786



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 120/385 (31%), Gaps = 22/385 (5%)

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
             +        + +LS     + +  + + +    +  E     ++ +       +   +
Sbjct: 478 YEEKLREIAEYLEILSDADRLKAVIREELEEIVTEYGDERRTEITASQHDLTVEDLITEE 537

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
             ++   +     A  +     +         +   V     +    +       +    
Sbjct: 538 DRVVTISHGG--YAKTQPLTDYQAQRRGGMGKSATAVKDEDFVEHLLIASTHATILCFSN 595

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
              +   +     L     +   +   +           + G R T+   V    +    
Sbjct: 596 LGKVYWLKVYQIPLAGRNSRGRPMINLL---------PLEEGERVTSILPVEDYTEGHYI 646

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
                       +     I   +  SV L AL  +EGD L           ++LLS++GK
Sbjct: 647 FMATASG----TVKKTALINFARQRSVGLRALELEEGDVLVGTAVTTGDCDVMLLSSEGK 702

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           A     G++ +       ++  I L    ++++  +     ++L VS  G     E SE 
Sbjct: 703 AVRFKEGDVRAMGRTARGVRG-IKLGDGHEMISLIIPREGGRVLTVSENGYGKRTEMSEF 761

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
               R  K  + + + E+   +   V+V  GD + ++     L+    D+I  + R  +G
Sbjct: 762 PTKGRGTKGVIAMQTSERNGTLVGAVQVFDGDQLMLISNQGTLVRTRADEISVLGRNTQG 821

Query: 687 VRLQSYK-DGGISDVICFKICEGLT 710
           VR+   K D  +  V   +  E   
Sbjct: 822 VRVIRTKTDESLVSVERIEEPEDDD 846


>gi|281424293|ref|ZP_06255206.1| DNA gyrase, A subunit [Prevotella oris F0302]
 gi|281401562|gb|EFB32393.1| DNA gyrase, A subunit [Prevotella oris F0302]
          Length = 867

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/772 (29%), Positives = 391/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDNDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG+IDGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN++E+ +   A IDNP+I ++ L++YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLREVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIY-GIQGVRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E       IVVTEIPY V K  LIE IA+L+   RI  + +  DES
Sbjct: 240 GRGRIVMRAKAEI-ESDESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVIDVKRDANANVILNKLFKMTALQSSFSVNCIALVK-GRPRLLSLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P     +   RF+
Sbjct: 358 EHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERFN 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L  +      +L+  +     +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYFQQILDDPELCKKVMKDELNEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           K+ +        RRT   E+  + +    +     +P+ + +S+ G+I+           
Sbjct: 478 KDKYGDE-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFHEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       +E D  +    A     +L  +  G+ Y L    +  G  + +  AIQ 
Sbjct: 530 RGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++++  +  I             ++++  ++  +  G                G   + +
Sbjct: 590 MLNIESDDAINAILRLTTLTDETFNNSHYVIFATKNGTVKKTSLEAYSRPRANGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDV 700
           +  +++  V    G + + +   N + + F+ + I  M R   GVR       D  +  +
Sbjct: 650 ADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTMGRTATGVRGMRLDGSDDEVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     E  T +  + + Y +        +  RGG G        ++G+ +S
Sbjct: 710 VTVNEAETETVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTGRLVS 761



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/285 (10%), Positives = 95/285 (33%), Gaps = 16/285 (5%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             + +  +           +  +        +   I   +         + +   R TT 
Sbjct: 552 ATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKGRAIQNML---NIESDDAINAILRLTTL 608

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            + +  +   +       +  TV  ++       +++   + A++  +GD +      + 
Sbjct: 609 TDETFNNSHYVI---FATKNGTVKKTSLEAYSRPRAN--GVIAINIADGDEVVDVRLTNG 663

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVV 617
            + +++ + +G+A       + +       ++ +     + ++V     +   T  ++VV
Sbjct: 664 RNELIMANRNGRAVRFNENTIRTMGRTATGVRGMRLDGSDDEVVGMVTVNEAETETVMVV 723

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVV-KVTGDHVAVVGENRKLLIF 673
           S +G     +  +     R GK    +       ++  +      + + ++ ++  ++  
Sbjct: 724 SEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTGRLVSIKNVTDENDLMIINKSGIVIRL 783

Query: 674 SIDQIPEMSRG-KGVRLQSY-KDGGISDVICFKICEGLTWIDSAG 716
           ++  +  M R  +GVRL +  K   +   +C  +   L       
Sbjct: 784 AVADVRVMGRATQGVRLINLAKKNDVIASVCKVMSSELEATVEEE 828


>gi|222085496|ref|YP_002544026.1| DNA topoisomerase IV, A subunit [Agrobacterium radiobacter K84]
 gi|221722944|gb|ACM26100.1| DNA topoisomerase IV, A subunit [Agrobacterium radiobacter K84]
          Length = 752

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/740 (64%), Positives = 614/740 (82%), Gaps = 1/740 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++++  V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI++AMSEMGL   AAF+
Sbjct: 13  DDSIVPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMSEMGLRPNAAFR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE
Sbjct: 73  KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P  FPNLLANG+SGIAVGMATSIPS
Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIAVGMATSIPS 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN  E+C+AAL LI + + ++E L+E YI GPDFPTGGII++ R SI+ESY+ GRGGFRV
Sbjct: 193 HNAHELCDAALHLIKDRDATVETLVELYIPGPDFPTGGIIIDDRRSIIESYKTGRGGFRV 252

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+W +E++GRG + IV+TEIP+QVQKSRLIEKIAEL++A+++PLLEDIRDESAED+R+V
Sbjct: 253 RAKWEIEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLLARKLPLLEDIRDESAEDIRVV 312

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L PK+R++D  +LMES+F LS++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL
Sbjct: 313 LIPKSRTVDATILMESMFKLSELESRFPLNMNVLSMGRIPKVMALNEVLKEWLDHRREVL 372

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RRS FR+ AI++R+EIL G LIAYLNIDE+IAIIR ED+PKPVM+ RF LT+NQV+AIL
Sbjct: 373 QRRSRFRLAAIEKRLEILGGFLIAYLNIDEVIAIIREEDEPKPVMMERFGLTDNQVEAIL 432

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           N+RLRSLRKLEE++I+ E D L  EK +I+ LL S ++QW  +A EI EVK+ F+K+T++
Sbjct: 433 NMRLRSLRKLEEFEIRKEFDGLSKEKSEIEVLLASDEKQWQTVAWEIGEVKKKFAKATEV 492

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           GRRRT F E   AD A LQQAMIEKEPITVV+S +GWIR+LK H  + S L FKEGD+LK
Sbjct: 493 GRRRTQFAEAPEADDAALQQAMIEKEPITVVVSEKGWIRALKGHISETSTLTFKEGDALK 552

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           +A  A TTD+IL+++T GKAYTL    L  GRGHGE +++++D+ ++QD++TAFV+D   
Sbjct: 553 VAFPAQTTDKILIITTGGKAYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTAFVHDPQR 612

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           K LV S+ GN F+V E+E++ANTRKGK  + +++ ++ KL+V V+GDHVAVVGENRK+++
Sbjct: 613 KQLVASTAGNGFVVAETELVANTRKGKQIMNLTTPDETKLLVPVSGDHVAVVGENRKMVV 672

Query: 673 FSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           F + QIPEMSRGKGVRLQ YKDGG+SD+ CF I +GLTW DSAGR++ +++++L  WLG 
Sbjct: 673 FPLSQIPEMSRGKGVRLQRYKDGGVSDIKCFAIADGLTWEDSAGRTFTKTKDELAEWLGD 732

Query: 733 RGGVGSLVPKGFPRSGKFLS 752
           R   G  VPKGFPR+G+F  
Sbjct: 733 RSAAGRAVPKGFPRTGRFSG 752


>gi|222053122|ref|YP_002535484.1| DNA gyrase, A subunit [Geobacter sp. FRC-32]
 gi|221562411|gb|ACM18383.1| DNA gyrase, A subunit [Geobacter sp. FRC-32]
          Length = 856

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/786 (32%), Positives = 397/786 (50%), Gaps = 56/786 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L + N  AV++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM +MG D+   
Sbjct: 2   LTQTNKVAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM Q+A  +L  +D++ V+    Y++   EP+V P+KFPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEIRMYQLAHELLADIDKETVEMGPNYDDSLKEPLVLPAKFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A+I NPE++ E+L+  I GPDFPT G  +  RE I+ +Y  GRG  +
Sbjct: 182 PPHNLAEVIDGIVAVIHNPELTFEELIALIPGPDFPTAG-FIYGREGILSAYSTGRGIIQ 240

Query: 252 VRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  VE   +     IVVTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES  +  
Sbjct: 241 MRARAIVETHKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    +  +P +++  ++  + M++ F + M  +     P+V+ L   +  ++ HRRE
Sbjct: 301 RVVVELKKDENPQIVLNHLYKQTQMQSSFGIIMLAIV-NNRPKVLTLRETINHFIDHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------------ 412
           ++ RR+ F ++  + R  IL+GL IA   +D +I +IR                      
Sbjct: 360 IVTRRTIFDLKKAEARAHILEGLKIALDWLDAVIELIRGSKNPAEAKEGLMSGIFSDEEW 419

Query: 413 ----------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                               L+E Q  AIL +RL  L  +E  +I  E   +L    ++ 
Sbjct: 420 LKKLGLSLPANHAEYAKPVMLSELQAQAILEMRLHRLTGMERDKIIDEYHEILRYIARLK 479

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L S  +    I  E+ E+KE F       +RRT   + +        +  I +E + V
Sbjct: 480 EILASETEILKIIVGELLELKEKFGD-----KRRTEIIDQTAE---ISLEDTIVEEDMVV 531

Query: 523 VISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            IS+ G+I+          +      + +  KE D ++    A + D ++  +  GK Y 
Sbjct: 532 TISHTGYIKRNAVTMYRAQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYW 591

Query: 575 LPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEES 629
           L    +        G+AI  L++L+ N+ I              +++ +  G        
Sbjct: 592 LKVYEIPEAGRATRGKAIVNLLNLSANEKITAILPVKEFAADKFIMMATRHGVVKKTPLM 651

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
           E       G   + +   +K+  V    G   V +   N K + F    +  + R  +GV
Sbjct: 652 EYSHPRLGGIIAVNLDEGDKLISVALTDGRQDVLLASRNGKSIRFKESDVRTVGRVSRGV 711

Query: 688 RLQSYKDGGISDVICFKICE--GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           R  + +D  +   +     E    T        + +           RGG G +  K   
Sbjct: 712 RGMTLEDDDVVIGMEIINEEYTDSTLFTVTENGFGKRTELGEYRCQSRGGKGIITIKTTE 771

Query: 746 RSGKFL 751
           R+G  +
Sbjct: 772 RNGCVV 777



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 63/514 (12%), Positives = 151/514 (29%), Gaps = 26/514 (5%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           RE+I       R     R  + +++    +  +   +I        +IE I         
Sbjct: 347 RETINHFIDHRREIVTRRTIFDLKKAEARAHILEGLKIALD-WLDAVIELIRGSKNPAEA 405

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
                    S E+    L     +   +     +      +    + ++ L+     +++
Sbjct: 406 KEGLMSGIFSDEEWLKKLGLSLPANHAEYAKPVMLSELQAQAILEMRLHRLTGMERDKII 465

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
                +  ++A  +E+L   +      +   +E+ +          EII           
Sbjct: 466 DEYHEILRYIARLKEILASETEILKIIVGELLELKEKF--GDKRRTEIIDQTAEISLEDT 523

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           ++     +T +    I    +   R                E       + S K      
Sbjct: 524 IVEEDMVVTISHTGYIKRNAVTMYRAQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFF 583

Query: 476 AC-----EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW- 529
                   ++  +   +     G+       +S  +K T    + E      ++      
Sbjct: 584 TDAGKVYWLKVYEIPEAGRATRGKAIVNLLNLSANEKITAILPVKEFAADKFIMMATRHG 643

Query: 530 -------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
                  +         + A++  EGD L           +LL S +GK+      ++ +
Sbjct: 644 VVKKTPLMEYSHPRLGGIIAVNLDEGDKLISVALTDGRQDVLLASRNGKSIRFKESDVRT 703

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                  ++ +  L  +  ++   + +       L  V+  G     E  E    +R GK
Sbjct: 704 VGRVSRGVRGM-TLEDDDVVIGMEIINEEYTDSTLFTVTENGFGKRTELGEYRCQSRGGK 762

Query: 640 TFLKVSSEEK---MKLVV-KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ-SYK 693
             + + + E+   +  +   V  + + ++ +  K+L   ++    + R  +GVRL  +  
Sbjct: 763 GIITIKTTERNGCVVDIKQVVDENDLMLITDQGKILRVPVEGFSIIGRNTQGVRLMVTED 822

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           D  +  V      E     +S     +    +  
Sbjct: 823 DERVVAVARLAEKEEDDADESTDGGLDTEVEEQE 856


>gi|113866815|ref|YP_725304.1| DNA gyrase subunit A [Ralstonia eutropha H16]
 gi|113525591|emb|CAJ91936.1| DNA gyrase subunit A [Ralstonia eutropha H16]
          Length = 888

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/804 (30%), Positives = 387/804 (48%), Gaps = 63/804 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               +    VSL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  
Sbjct: 2   DPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF   Y+  + EP + P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRLAKIAHEMLFDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  L L+ NP+ ++++L+E I  PDFPT G I+   + + E YR GRG  
Sbjct: 182 IPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAG-IIYGIQGVREGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L+E+IAEL+  K+I  + DIRDES +  
Sbjct: 241 VMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R+  P++++ +++  + ++  F +NM  L   R P+++ L  +L+ +LAHRR
Sbjct: 301 MRVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVD-RQPRLLNLRQMLEYFLAHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------- 414
           EV+ RR+ F ++    R  +L+GL +A  NIDE IAII+    P                
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSAL 419

Query: 415 -----------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L++ Q   IL +RL+ L  LE+ 
Sbjct: 420 VREMLARAEGETPGGRASYRPDGLPPVFGMQADGLYRLSDGQAQEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I  E  +++A    +  +L   ++    I  E+  ++  F                +  
Sbjct: 480 KIVQEYRDIMAVITDLLDILARPERITAIIVDELTAIRAEFGDERRSQIELNATELDTED 539

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
                   +       +        R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +        G  I  +  L+  + I        +D+   + + +++
Sbjct: 600 FSNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSEGEKINVILPVKQFDAEHFIFMATAR 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       +E     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGW 729
            M R  +GVR  + +DG     +     E           + + +    Y +        
Sbjct: 720 PMGRQARGVRGMNLEDGQTVIAMLVAPAETAEEAEAGMRGSVLTATENGYGKRTPIAEYT 779

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              RG  G +  +   R+G+ +++
Sbjct: 780 RHGRGTKGMIAIQTSERNGRVVAA 803



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 661 TVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRP 720

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L   Q ++   V  +             +L  +  G       +E  
Sbjct: 721 MGRQARGVRGM-NLEDGQTVIAMLVAPAETAEEAEAGMRGSVLTATENGYGKRTPIAEYT 779

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     +   +   +    D + ++     L+   + +I EM R  +GV
Sbjct: 780 RHGRGTKGMIAIQTSERNGRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGV 839

Query: 688 RLQSYKDG 695
            L +  +G
Sbjct: 840 TLINVDEG 847


>gi|58582029|ref|YP_201045.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623941|ref|YP_451313.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576360|ref|YP_001913289.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426623|gb|AAW75660.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367881|dbj|BAE69039.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520812|gb|ACD58757.1| DNA gyrase, A subunit [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 898

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/819 (31%), Positives = 389/819 (47%), Gaps = 80/819 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM E+G     A+
Sbjct: 4   TAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYT
Sbjct: 64  FKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP
Sbjct: 124 ESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALID PE+ +E L+EYI GPDFPT G I+     I   YR GRG  R+
Sbjct: 184 PHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAG-IINGTAGIAAGYRTGRGRVRI 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  VE    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME+ F +NM  L     PQ+M L  +L+ ++ HRREV+
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALID-GRPQLMNLKQMLEAFIRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P+                  
Sbjct: 362 TRRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGA 421

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + L+E Q   IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLGAAGAEASKPEDLPPGVGLIKGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
              E +  +L +       I  E+  ++E +        R +          A     + 
Sbjct: 482 GVIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ +      SA   KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
           P   L        G  I   I L   + +        Y     +   +  G       SE
Sbjct: 602 PVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYVDNRYVFFATRNGTVKKTSLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    GD  V +   N K + F    +  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDEGDALIGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVR 721

Query: 689 LQSY----------------------KDGGISDVI---------CFKICEG---LTWIDS 714
                                     +   + DV+           ++ +       + +
Sbjct: 722 GIRLTKGEEVVSLIVAERAGGADEEIEADDVDDVVETTDGAETAVIEVADDGNVAYILTA 781

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+GK + +
Sbjct: 782 TENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 36/122 (29%), Gaps = 8/122 (6%)

Query: 603 VTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVK 655
                         +L  +  G       +E     R  +  + +     + + ++ V+ 
Sbjct: 764 TAVIEVADDGNVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLL 823

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
              D V ++ +   L+     +I  + R  +GV L     G     +           D 
Sbjct: 824 GATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVEDV 883

Query: 715 AG 716
           AG
Sbjct: 884 AG 885


>gi|256848501|ref|ZP_05553943.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256714768|gb|EEU29747.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 836

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/773 (31%), Positives = 399/773 (51%), Gaps = 38/773 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  + +SN        +  V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ 
Sbjct: 1   MAEEEMSN-------RITDVKLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYG 53

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+     +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG+
Sbjct: 54  MNELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGS 113

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM+++A  +L+ +++D VDF+D Y+  + EP V P++FPNLL NG 
Sbjct: 114 VDGDGAAAMRYTEARMSKIAVEMLRDINKDTVDFQDNYDGTEKEPTVLPARFPNLLVNGA 173

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP+HN+ E+  A   L+DNP+ + E L++ + GPDFPTGG+++  +  I 
Sbjct: 174 SGIAVGMATNIPTHNLGEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVL-GKSGIR 232

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  G+G   VRA+  +EE   G   I+V EIPY V K++LIE+IAEL   K I  + D
Sbjct: 233 KAYETGKGTIIVRAKVDIEETKTGRQQIIVHEIPYMVNKAKLIERIAELAREKEIDGITD 292

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + DE+  +   ++    R    ++++ +++ ++ M+T F  NM  +     P+++ L  I
Sbjct: 293 VNDETDREGMRIVIDVRRDASAEVILNNLYKMTMMQTTFNFNMLAIVK-GAPKILSLKEI 351

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L  +L H+ EV+ RR+ F ++  + R  I++GL IA  +IDEII IIR        K  +
Sbjct: 352 LTYYLEHQEEVVRRRTEFELKKAESRAHIVEGLRIALDHIDEIIKIIRQSQTSEVAKSEL 411

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +S++ L++ Q  AIL++RL  L  LE  +I++E   L+        +L   ++    I  
Sbjct: 412 MSKYGLSDRQAQAILDMRLVRLTGLEREKIEAEYKKLMEAIADYKDILAHRERIQQIIYD 471

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++E++  F  +     RRT              + +IE++ I V +++ G+I+      
Sbjct: 472 ELKEIQRRFGDA-----RRTEL--QVGDITNLEDEDLIEQQDIVVTLTHNGYIKRLPVDE 524

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HG 587
                     +  +     D ++  + + T D +L  +  GK +++    +        G
Sbjct: 525 FKSQNRGGRGVKGMGVHSDDFIEHLISSSTHDMLLFFTNSGKVFSMKGYEIPEYGRSAQG 584

Query: 588 EAIQLLIDLNHNQDIVTAFVY------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             I  L+ ++  + I            D+   L  V+ +G        E       G   
Sbjct: 585 IPIINLLGIDAKEKINAVINVSNTAEEDADRDLFFVTKQGVVKRTAVEEFKNIRSNGLKA 644

Query: 642 LKVSSEEKMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           + +   +++  V  +  D   ++       + FS   +  M R   GVR    ++G    
Sbjct: 645 INLHDGDELIAVEIIDHDQNMIIGTHEGYAVSFSASAVRSMGRAAAGVRGVRLREGDFV- 703

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +   ++      +  + + + +        +  RGG G        ++G    
Sbjct: 704 IGAGQLNPDSRVLVISEKGFGKQTPAAEYPIKGRGGKGIKTVNVTEKNGPLAG 756



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 72/524 (13%), Positives = 152/524 (29%), Gaps = 34/524 (6%)

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A + L +  ++++ +            G   + S + I+  Y L      VR R   E
Sbjct: 312 ASAEVILNNLYKMTMMQTTFNFNMLAIVKGAPKILSLKEILTYY-LEHQEEVVRRRTEFE 370

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--SAEDVRIVLFPKN 317
                S   +V  +   +     I KI        +   E +     S    + +L  + 
Sbjct: 371 LKKAESRAHIVEGLRIALDHIDEIIKIIRQSQTSEVAKSELMSKYGLSDRQAQAILDMRL 430

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             L      +       +        ++L+     Q +  D + +               
Sbjct: 431 VRLTGLEREKIEAEYKKLMEAIADYKDILAHRERIQQIIYDELKEIQRRFGDARRTELQV 490

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-----VSRFSLTENQVDAIL 432
             +  ++    I +  ++  L  +  I  +  ++                 +++ ++ ++
Sbjct: 491 GDITNLEDEDLIEQQDIVVTLTHNGYIKRLPVDEFKSQNRGGRGVKGMGVHSDDFIEHLI 550

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKST 490
           +     +        K          E   S           I    +I  V  + + + 
Sbjct: 551 SSSTHDMLLFFTNSGKVFSMKGYEIPEYGRSAQGIPIINLLGIDAKEKINAVINVSNTAE 610

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           +   R   F       K T  +                        S  L A++  +GD 
Sbjct: 611 EDADRDLFFVTKQGVVKRTAVEEFK------------------NIRSNGLKAINLHDGDE 652

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L           +++ + +G A +  A  + S      A    + L     ++ A   + 
Sbjct: 653 LIAVEIIDHDQNMIIGTHEGYAVSFSASAVRSMGRAA-AGVRGVRLREGDFVIGAGQLNP 711

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGE 666
             ++LV+S KG       +E     R GK    V+       +  +  V GD  + +V  
Sbjct: 712 DSRVLVISEKGFGKQTPAAEYPIKGRGGKGIKTVNVTEKNGPLAGLTTVDGDEDIMLVTT 771

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
              ++ F ++ + E  R   GV L    DG     +     E  
Sbjct: 772 EGVIIRFGVETVSETGRATIGVHLIKLTDGSKVATMTRVAKEEA 815


>gi|170767272|ref|ZP_02901725.1| DNA gyrase, A subunit [Escherichia albertii TW07627]
 gi|170123606|gb|EDS92537.1| DNA gyrase, A subunit [Escherichia albertii TW07627]
          Length = 875

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   K+ D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKDEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVEEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 42.1 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVEEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ +  E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEGENVVGLQRVAEPVDDEDL 848


>gi|320156817|ref|YP_004189196.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O]
 gi|319932129|gb|ADV86993.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O]
          Length = 903

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/817 (31%), Positives = 400/817 (48%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDEII +IRN   P            
Sbjct: 355 DHRREVVTRRTIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLESAGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E +++  +L S ++    I  E+  V++ F           +         A
Sbjct: 475 DEYKALLDEIKELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        + +   + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSADKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   + +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFSNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPVL 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     +G   +    
Sbjct: 715 DENGNPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKNDGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +           RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTVLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810


>gi|313893473|ref|ZP_07827043.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441916|gb|EFR60338.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412]
          Length = 824

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/760 (33%), Positives = 394/760 (51%), Gaps = 16/760 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++       N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G
Sbjct: 1   MADQQ-WSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDS
Sbjct: 60  MTPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDS 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++ + +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAV
Sbjct: 120 AAAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+C     LIDNP++++++L+  I GPDFPTG  ++  RE I ++Y  
Sbjct: 180 GMATNIPPHNLNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGA-LILGREGIKKAYST 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RAR  +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES
Sbjct: 239 GRGSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++      + PD+++  ++  + ++  F + M  L     P+V+ L  +L  +L
Sbjct: 299 DRQGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVD-GHPRVLNLKEVLGYYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR  V+ RR+ F +   + R  IL+GLLIA  +IDE+IA IR+       +  ++ +F 
Sbjct: 358 DHRLNVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RLR L  LE  +I+ E   LLA  E + ++L+S  +Q   I  E+ ++
Sbjct: 418 LSEKQAVAILDMRLRRLTGLEREKIEDEYKELLALIEDLKAILSSEARQRQIIKDELDDM 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ +           T         A  +  +   +   +   N    R+       +  
Sbjct: 478 KKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIG 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---GRGHGEAIQLLIDLNHN 599
           +  KE D +   +H  T + +L  ++ G+ Y L A  +         G A+  ++ L   
Sbjct: 538 MKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVG 597

Query: 600 QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + + T    +       L +V+  G        E     R G   + +   + +  V   
Sbjct: 598 ESVTTMIDLERVQEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDHLISVNVT 657

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT--WI 712
            G   + +  +    + FS + +  M R   GVR      G +         +       
Sbjct: 658 NGSQDILLGTKLGIAIRFSENDVRLMKRAAHGVRGIKLNAGDVVVGAGVLNADESEAQVF 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   + +  +     L KRGG GS   K   ++G  +S
Sbjct: 718 TISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVS 757



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 70/197 (35%), Gaps = 10/197 (5%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+               L+A++  EGD L      + +  ILL +  G A      ++  
Sbjct: 623 VVKRTAIEEYRNIRRSGLNAINLDEGDHLISVNVTNGSQDILLGTKLGIAIRFSENDVRL 682

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGK 639
            +         I LN    +V A V ++     ++  +S +G     +        R GK
Sbjct: 683 MKRAA-HGVRGIKLNAGDVVVGAGVLNADESEAQVFTISEEGFGKRNDAEAYTLQKRGGK 741

Query: 640 TF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE-MSRG-KGVRLQSYK 693
                 +   + + + + V    D V ++ E  K++ F+++ I     +   GV+ Q+  
Sbjct: 742 GSKNFKITNKTGDVVSVEVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLD 801

Query: 694 DGGISDVICFKICEGLT 710
           +G     I       + 
Sbjct: 802 EGDKVASIAVIPGSEIE 818


>gi|297616220|ref|YP_003701379.1| DNA gyrase subunit alpha [Syntrophothermus lipocalidus DSM 12680]
 gi|297144057|gb|ADI00814.1| DNA gyrase, A subunit [Syntrophothermus lipocalidus DSM 12680]
          Length = 811

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/750 (32%), Positives = 396/750 (52%), Gaps = 13/750 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +  V  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++A  E G+      
Sbjct: 4   SQTKVLPIDIEKEVKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFYEQGMTPEKPH 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA +VG V+G+ HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGDS AA RYT
Sbjct: 64  RKSANLVGLVLGQYHPHGDAAVYDAMVRMAQDFSMRYCLVDGHGNFGSVDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T +A  +L+ +++D VDFR  Y++   EPVV P++ PNLL NG++GIAVGMATSIP
Sbjct: 124 EARLTALAVEMLRDIEKDTVDFRPNYDDTRQEPVVLPARLPNLLINGSTGIAVGMATSIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ E  + L++NPE ++++L+ YI GPDFPT G ++     + ++YR GRG   V
Sbjct: 184 PHNLTEVVEGLIHLLENPEATVDELMRYIKGPDFPTAG-LIMGTRGMRQAYRTGRGSVTV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R R  +EE   G   IVVTEIPY V K++L+E+IAEL+  K+I  + D+RDES      +
Sbjct: 243 RGRCEIEEKKGGRTSIVVTEIPYMVNKAKLVERIAELVKEKKIDGITDLRDESDRRGIRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R + P +++  ++  + ++  F + +  L     PQV+ L  +L ++L HRREV+
Sbjct: 303 VMDIRRDISPSVILNKLYRNTQLQDNFGITLLALVD-GEPQVLNLKEMLNQYLNHRREVI 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ F ++    R+ I++GL IA  N+DE++ IIRN       +  ++SRF LTE Q +
Sbjct: 362 RRRTEFDLKVARDRLHIVEGLKIALDNLDEVVDIIRNSPDVKTARNNLMSRFDLTEMQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE  +++ E   L+     ++ +L   ++    I  ++ ++K  F   
Sbjct: 422 AIVEMRLRQLTGLERNKLEEEYRELVGRISDLEDILRRPERVQAIIKEDLIDIKTRFGDK 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                R       +          +       +        RS +     ++    +  D
Sbjct: 482 RRTEIREEDASFEAEDLIEEESIVVTLSNRGYIKRQPLSTYRSQRRGGKGVTGTAIRSED 541

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV 607
                    T   +L  +  G+ Y+L A  +     +  G  +   + LN  + + T   
Sbjct: 542 FATDIFVTTTLSTLLFFTNHGRVYSLKAYQVPEASRQSRGTPVINFLRLNPGEKVNTVIS 601

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAV 663
              +D+   L++ +  G    V   E     R G   + + +++++  V K+  GD + +
Sbjct: 602 VNRFDAGQHLVMATRTGMVKKVPIDEFRQIRRSGIIAINLRNQDELVGVQKIYKGDRLVL 661

Query: 664 VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           V      ++F    +  M RG  GVR  S + G    +   K  EG   +    R Y + 
Sbjct: 662 VTGRGYSIVFDEGDVRVMGRGAAGVRGISLEQGDKV-IDIDKYKEGADMLLVTERGYGKR 720

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +     L KRGG G    +   ++G+ + 
Sbjct: 721 TSLQELRLQKRGGKGLKTIQISEKTGELVG 750


>gi|297570052|ref|YP_003691396.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925967|gb|ADH86777.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 837

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/756 (32%), Positives = 391/756 (51%), Gaps = 33/756 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   L + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+   +   F KSARIV
Sbjct: 13  ISIEKELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELNNYYNRPFLKSARIV 72

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG++DGD  AA RYTEARMT++
Sbjct: 73  GDVIGKYHPHGDSAVYDTLVRMAQSFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARMTRI 132

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            + ++  +D++ VDF   Y+   +EP+V P++ PNLL NG +GIAVGMAT+IP HN++E+
Sbjct: 133 DQDLISDLDKETVDFVPNYDNSMTEPLVLPARIPNLLINGAAGIAVGMATNIPPHNLREV 192

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  +A+I++P I++  L+E+I GPDFPTG  I   R  I E+Y  GRG   +R+R  VE
Sbjct: 193 IDGLIAMIEDPNITVSALMEHISGPDFPTGAYI-CGRAGIREAYETGRGSLMLRSRCEVE 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +   G   I++TEIPYQ  K+ LIE+IA L+  K+I  + ++RDES      ++    + 
Sbjct: 252 KQKNGRESIIITEIPYQQNKTTLIERIALLVKEKKIESISEVRDESDRQGMRIVLDLKKD 311

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + ++++  ++ ++ ++  + + +  +     P+++ L  IL+ ++ HR+ V++RR++  
Sbjct: 312 ENAEVVINQLYKMTPLQRGYGIILLSIV-NNRPEILNLRQILEHFILHRKTVVYRRTAHD 370

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAILNLRL 436
           ++  + +  IL+GL IA  N+DE++ +I++   P        +RF+L+  Q  AIL +RL
Sbjct: 371 LRKAEEKAHILEGLKIAITNLDEVVELIKSSANPNEAREGLINRFALSAIQAQAILEMRL 430

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L  LE  +I  E   L+ E E +  +L         I  E   ++E +        RR
Sbjct: 431 HRLTGLEREKIIEEYQALMKEIEWLRRVLADESLVLQIIRQEFEAIREQYGDE-----RR 485

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEG 548
           T   E   A    L + MI +E + V +++ G+I+                       + 
Sbjct: 486 TEIIE---APDEILPEDMIAREDMVVTVTHAGYIKRNPVDLYRAQRRGGKGIRGAGGIDD 542

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D +     A T D +L  +  G+ +      +        G+A+  L+DL   + +    
Sbjct: 543 DFISWMHVASTHDTLLFFTNRGRVFWRKVYEIPQAGRLARGKAVVNLLDLAPEEKLAAIL 602

Query: 607 VYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
              S        C +L+ + KG        E     R+GK  L    ++++       GD
Sbjct: 603 PVQSFEVPEGRECYILMATRKGVVKKTTIQEFSRPVRRGKIALTFREDDEILAAALTYGD 662

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWIDSAG 716
             + ++      + F    I  M RG  GVR  +      +  V         + +    
Sbjct: 663 NEILLLSRKGMAVRFHEGDIRPMGRGATGVRGINLGSADELVGVSVLSGDPETSILVVTE 722

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +        L +RGG G +  K   R+G  + 
Sbjct: 723 NGYGKRTLVDEYRLIRRGGKGVMAIKASERNGAVVG 758



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 6/170 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
               AL F+E D +  A   +  + ILLLS  G A     G++         ++ +   +
Sbjct: 640 RGKIALTFREDDEILAAALTYGDNEILLLSRKGMAVRFHEGDIRPMGRGATGVRGINLGS 699

Query: 598 HNQDI-VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV-- 654
            ++ + V+    D    +LVV+  G        E     R GK  + + + E+   VV  
Sbjct: 700 ADELVGVSVLSGDPETSILVVTENGYGKRTLVDEYRLIRRGGKGVMAIKASERNGAVVGM 759

Query: 655 --KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
                 D V ++    +++   +  +  + R  +GVRL +         +
Sbjct: 760 LQVTDEDQVMMITNAGQIIRMPMTDLRVIGRNTQGVRLFNLGAEEKVVAL 809


>gi|212703757|ref|ZP_03311885.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098]
 gi|212672725|gb|EEB33208.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098]
          Length = 851

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/768 (34%), Positives = 414/768 (53%), Gaps = 31/768 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  N+ +++    VS+   L + YL Y+LS I  RAIPD RDG KPVHRRI++A  E+ 
Sbjct: 1   MSEQNSGIQQP--QVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMYAQYELA 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
             +    KKSARIVG+VIGK HPHGD +VYD+LVRLAQ F  R PL+ GQGNFG+IDGD+
Sbjct: 59  NSYNRPHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDA 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A   L  +D++ VDFR  Y+    EP V P+K PNLL NG+SGIAV
Sbjct: 119 AAAMRYTEVRMSRLASEFLADIDKETVDFRPNYDNTLQEPSVLPTKVPNLLLNGSSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+C+A   L+D+P+ +I  L+E + GPDFPT G +   +  + ++Y  
Sbjct: 179 GMATNIPPHNLGELCDALQMLLDDPQCTISDLMEVVKGPDFPTRGFVYAGK-GLSDAYHT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VR R  VEE  +G   IV+ EIP+ + KS L+EKIA L+   +I  + D+RDES
Sbjct: 238 GRGTVKVRGRLEVEERKKGLQAIVIREIPFGLNKSSLVEKIAGLVNDHKIDGISDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    R   PD+++ S++  + +ET F +NM  +   R P ++ L   L  ++
Sbjct: 298 DRKGIRVVIDLKRGTIPDIVINSLYKYTPLETSFGINMLAVVDNR-PVLLNLKTALSCFV 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            HRREV+ RR+ + +Q  + R  IL+GL IA  +IDE++A+IR    P       + RF 
Sbjct: 357 DHRREVVIRRTRYDLQKAEARAHILEGLRIAIDHIDEVVALIRASASPDEARAGLMQRFE 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  L+  ++ +E   LL + E   S+L + +   +++  EIRE+
Sbjct: 417 LSEVQARAILDMRLQRLTGLQREELMAEYRELLEKIEFFKSVLENPEVLRSELKREIREI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +E F+       RRT     + A      + +I  E + + +S RG+++          K
Sbjct: 477 RETFATP-----RRTEVL--TDALGGIDIEDLIPDEEVVITLSRRGYMKRTSLENYQQQK 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                ++ALH  + D ++  L       + L +  G+ + L    +  G    +   I  
Sbjct: 530 RGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVPEGSRTAKGVHINN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + + T      +      L V+ +G       S      + G   + +  +++
Sbjct: 590 LLPLEEGEWVTTVLAVREFAEDKYFLFVTKRGMVKRSSASLYARCRKSGLMAVGLREDDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKI 705
           + +V  +  D H+ +   +   + F+   +  M R   GV+  + +  D  ++ VI  + 
Sbjct: 650 LVVVRPIREDSHIVLATADGYSIRFACKDVRPMGRVATGVKGIALRRQDVVVAGVILKEN 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    +  +   + +     L  L  RGG G +  K   ++G  + +
Sbjct: 710 DQTTEIMSISANGFGKRTRVDLYRLQSRGGKGIINFKVTSKTGPVVGA 757



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 66/195 (33%), Gaps = 11/195 (5%)

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            V  S+       +     L A+  +E D L +         I+L + DG +      ++
Sbjct: 622 MVKRSSASLYARCRKS--GLMAVGLREDDELVVVRPIREDSHIVLATADGYSIRFACKDV 679

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLVVSSKGNAFIVEESEIIANTRKG 638
                    ++ +     +  +    + ++    +++ +S+ G             +R G
Sbjct: 680 RPMGRVATGVKGIALRRQDVVVAGVILKENDQTTEIMSISANGFGKRTRVDLYRLQSRGG 739

Query: 639 KTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK 693
           K  +      K   +   + V  +  + ++    K++   ++ +    R   GV L    
Sbjct: 740 KGIINFKVTSKTGPVVGAMPVRDNDGLIMLTSANKVVRIGVEDVRSKGRATMGVMLVRLD 799

Query: 694 DGGISDVICFKICEG 708
           +G  + V+ F   + 
Sbjct: 800 EG--AHVVGFDRVDE 812


>gi|198274607|ref|ZP_03207139.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135]
 gi|198272054|gb|EDY96323.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135]
          Length = 848

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/757 (30%), Positives = 399/757 (52%), Gaps = 21/757 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG+IDGDSAAA RYTE
Sbjct: 64  KAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++ E ++Q + ++ VDF + +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLKKIGEEMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +A +A IDN EI ++ L++YI  PDFPTGG I      + ++Y  GRG   +R
Sbjct: 184 HNLREVIDACVAYIDNNEIDVDGLMQYIKAPDFPTGGYIY-GISGVRDAYETGRGRVVMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IVVTEIPY V K+ LI+ IA+L   K+I  + ++ DE+  +   ++
Sbjct: 243 AKAEI-ESHPTHDKIVVTEIPYGVNKAELIKSIADLSNDKKIEGISNVNDETDREGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR EV+ 
Sbjct: 302 IDIKRDANASVVLNKLYKMTMLQTSFGVNNVALVH-GRPRLLNLKELIKYFVEHRHEVVI 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDA 430
           RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      +++RF+L+E Q  A
Sbjct: 361 RRTRYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMARFNLSEIQARA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RLR L  L + Q+ +E ++L+ +    + +L++ +     I  E+ EVKE +  + 
Sbjct: 421 IVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEILSNEELCKKVIKDELLEVKEKYGDNR 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                  +         A  +  +       +  +     R+     V       +  D 
Sbjct: 481 RSEIVYASEEFNPEDFYADDEMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRNEDF 540

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF-- 606
           ++    A   + +L  +  GK Y L    +  G    +  AIQ L+++  +  +      
Sbjct: 541 IEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGNKTSKGRAIQNLLNIEADDVVTAYLRV 600

Query: 607 ------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                  + ++  +L  +  G        +     + G   + +  ++++  V    G +
Sbjct: 601 KNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGNN 660

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWIDSA 715
            + +   N + + F    + EM R   GVR  +  + G   +  +IC K  E  T +  +
Sbjct: 661 EIVIANRNGRAIRFHESAVREMGRTATGVRGITLDEDGQDEVIGMICIKDPETETIMVVS 720

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +  +        RGG G        ++G  ++
Sbjct: 721 ENGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGSLVA 757


>gi|295398130|ref|ZP_06808179.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans
           ATCC 11563]
 gi|294973649|gb|EFG49427.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans
           ATCC 11563]
          Length = 859

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/768 (30%), Positives = 392/768 (51%), Gaps = 34/768 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     ++E      +   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IKEQFPQREISQEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 58  VTSDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQ 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +++ +++D VDF   Y+ E+ EP V P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIAHEMVRDMNKDTVDFIPNYDGEEREPEVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP+HN+ E+  A   L+ N + +  +L+E + GPDFPTGGI++  +  I ++Y  
Sbjct: 178 GMTTNIPTHNLSEVIGAIKILMQNADATTNELMEALPGPDFPTGGIVI-GKSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E +  G   I+V EIPY V K++L+E+IAEL   KR+  +  +RDES
Sbjct: 237 GKGTIIVRAKLDIETLSSGKERIIVHEIPYMVNKAKLVERIAELARDKRVEGITAVRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    +     +++ +++  + ++T F +NM  +    VP+ + L  IL+ +L
Sbjct: 297 GREGMRVVIECRKDASASVIVNNLYKYTQLQTNFGINMVAIV-NGVPRTLSLKEILQNYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H+ EV+ RRS F     + R  IL+GL IA  +IDEI+ I+R            +  + 
Sbjct: 356 LHQEEVIRRRSIFEKNKAEARAHILEGLQIALDHIDEIVNILRTSRSGDEAKARFIEDYK 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +I  E   L+A+ + ++ +L S   ++  I  E+ E+
Sbjct: 416 LSDKQSQAILDMRLVRLTGLEREKIDKEHAELMAQIDYLNQVLGSETMRYQIIYDELIEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +  F        RRT    +         + +IE+  + V ++  G+I+           
Sbjct: 476 ESKFGD-----DRRTEL--MVGEIHNIDDEDLIEESNVIVTLTQNGYIKRIDDVEFRAQN 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D +L  +  G+ +      +       +   +  
Sbjct: 529 RGGTGVKGMSMNDDDFVETMLSTSTHDSVLFFTNTGRVFHSKGYEIPEFGRAAKGIPVVN 588

Query: 593 LIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           L++L  ++ +                 LL V+  G       S+       G   LK++ 
Sbjct: 589 LLNLQQDETVQAMINVTPIEDAEVKEHLLFVTKNGTVKRTNASDYFNIRNNGLIALKLAE 648

Query: 647 EEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++  VV  +GD  + +   +   + F    +  M R   GVR     DG     +   
Sbjct: 649 GDELVKVVLTSGDDNIIIASRDGYAVSFQETNVRSMGRTATGVRGIRLNDGDQVVGMSVL 708

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +    +    + Y +        +  RGG G        ++G  + 
Sbjct: 709 GPDD-NVLVVTEKGYGKQTPASEYGIKNRGGKGVKTINVTEKNGILVG 755



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 77/213 (36%), Gaps = 12/213 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E  +A          E +   + ++  G ++   +          L AL   EGD L   
Sbjct: 596 ETVQAMINVTPIEDAEVKEHLLFVTKNGTVKRTNASDYFNIRNNGLIALKLAEGDELVKV 655

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +     D I++ S DG A +    N+ S       ++  I LN    +V   V      +
Sbjct: 656 VLTSGDDNIIIASRDGYAVSFQETNVRSMGRTATGVRG-IRLNDGDQVVGMSVLGPDDNV 714

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEK-MKLVVKVTGD-HVAVVGENRKL 670
           LVV+ KG       SE     R GK    + V+ +   +  +  V+G+  + ++      
Sbjct: 715 LVVTEKGYGKQTPASEYGIKNRGGKGVKTINVTEKNGILVGLTTVSGEEDIMLMTNQGIA 774

Query: 671 LIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
           + F    I +  R  +GVRL    +      I 
Sbjct: 775 IRFHAKNISQTGRATQGVRLIRLAEDSYVSAIA 807


>gi|262278124|ref|ZP_06055909.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
 gi|262258475|gb|EEY77208.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
          Length = 904

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/827 (30%), Positives = 409/827 (49%), Gaps = 95/827 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMTKLAHELLADLEKDTVDWEDNYDGSERIPQVVPTRVPNLLINGAAGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  DNP ISIE L+EYI GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES +D  
Sbjct: 240 IRGKYHFEEDEKTGRITIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F+ + +E  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVIVNNLFLNTQLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ F ++    R  IL+GL +A  NIDEII  I+    P                 
Sbjct: 359 VVTRRTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGV 418

Query: 420 -------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV AIL LRL  L  LE+ ++ 
Sbjct: 419 VSLLEKAGAISVRPDEIEGENPDRPFGLSESIYRLSPTQVGAILELRLHRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN        I  E+ +V + +        RRT   E   +   
Sbjct: 479 AEYTEILGQIAELTAILNDFNLLMAVIREELAQVLQQYGD-----GRRTEIIE---SRID 530

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+         ++ +      SA   K  D ++  + A   
Sbjct: 531 FSREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKSDDFIQHLIVASNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             +L  +  GK Y L    +       +   I  L+ L+ N+ +        +     + 
Sbjct: 591 ATVLCFTNVGKVYRLRVFEVPQASRGAKGRPIINLLPLDANETVTAILPLTEFLENHYVF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + ++ G    V+  +       G   ++++ E+ +  V    G+  + +     K + F+
Sbjct: 651 MATASGTVKRVDLEQFSNIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFA 710

Query: 675 IDQIPEMSR-GKGVRLQS--------------YKDGGISD-------------VICFKIC 706
              +  M R  KGVR                  ++    D             V    + 
Sbjct: 711 ETDVRSMGRTAKGVRGMRVSIASNTLSEEDAEIENDESDDNEDSAELSVVSRIVSLVVVP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 771 ETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 47/116 (40%), Gaps = 6/116 (5%)

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMK 651
           +L+    IV+  V   T ++L  S+ G       ++     R GK  + + + E   ++ 
Sbjct: 756 ELSVVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELV 815

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFK 704
             V +     + ++ +   L+     ++    R  +GVRL    ++  +  V+  +
Sbjct: 816 GAVSIDESKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871


>gi|289208383|ref|YP_003460449.1| DNA gyrase subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288944014|gb|ADC71713.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 870

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/784 (34%), Positives = 405/784 (51%), Gaps = 49/784 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+   +KK
Sbjct: 6   KEIFPVNLEDEMQQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L  GQGNFG+IDGDS AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDAIVRMAQPFSMRYMLADGQGNFGSIDGDSPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VDF D Y+  ++EP V PSKFPNLL NG++GIAVGMAT+IP H
Sbjct: 126 RMARIAAELLADIDKETVDFIDNYDGSETEPAVLPSKFPNLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A +ALID+PEISIE L+E++ GPDFPT G I+   E + E+YR GRG   +RA
Sbjct: 186 NLREVINACVALIDDPEISIEGLMEHVPGPDFPTAG-IINGVEGVREAYRTGRGRVLIRA 244

Query: 255 RWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE +  G    IVVTE+PYQV K+RL EKIAEL+  KRI  + ++RDES +D   ++
Sbjct: 245 RSHVEPLEGGQREAIVVTELPYQVNKARLTEKIAELVKEKRIDGISELRDESDKDGMRLV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++  ++M + M+  F +N+  L     P+V+ L  +L+ +L HRREV+ 
Sbjct: 305 IELKRGEMAEVVLNHLYMHTQMQNVFGINIVALVD-GQPKVLDLRQVLESFLRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------- 417
           RR+ F ++    R  IL+GL IA  NID +I +IR    P                    
Sbjct: 364 RRTIFDLRKARERAHILEGLAIALANIDPVIELIRAAPNPAEAKAGLLARSWPLGVVSDM 423

Query: 418 ---------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+E Q  AIL+LRL  L  LE+ +I  E   LL 
Sbjct: 424 LDRAGASASRPEDLAADYGVGDDGYRLSEAQAQAILDLRLHRLTGLEQDKILDEYRELLD 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             E +  +L SG++   +I  E+  V E F        R                  +  
Sbjct: 484 LIEDLLDILGSGERLQQEIRNELLAVAEQFGDERRSEIRERQANLTLEDLIGEEDVVVTL 543

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                V        R+ +      +A  FKE D +   L A+T D +L  S+ G+ Y L 
Sbjct: 544 SHAGYVKYQPVADYRAQRRGGRGKAAASFKEEDFVDRLLVANTHDTVLCFSSRGRVYWLK 603

Query: 577 AGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI 631
              L        G+ I  L+ L  ++ I        YD    + +V+++G       ++ 
Sbjct: 604 VYELPQGSRASRGKPIVNLLPLEADERINAILPVREYDPDHYVFMVTARGTVKKTPLTDF 663

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
                 G   + +  ++ +  V    G   V +V    K + FS + +  M R   GVR 
Sbjct: 664 SRRRSTGIIAVDLRDDDYLVDVSLTDGQMDVMLVTTAGKAVRFSENDVRPMGRTACGVRG 723

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
              +      +    + EG   + +    Y +        + +RGG G +  +   R+G 
Sbjct: 724 VRMESDHRV-IALLNVAEGAALL-ATENGYGKRTRFDEFPVHRRGGQGVIGIQTEGRNGP 781

Query: 750 FLSS 753
            + +
Sbjct: 782 LVGA 785



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 7/168 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S  + A+  ++ D L           ++L++T GKA      ++         ++  
Sbjct: 665 RRRSTGIIAVDLRDDDYLVDVSLTDGQMDVMLVTTAGKAVRFSENDVRPMGRTACGVRG- 723

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEK 649
           + +  +  ++          LL  +  G        E   + R G+  + +     +   
Sbjct: 724 VRMESDHRVIALLNVAEGAALL-ATENGYGKRTRFDEFPVHRRGGQGVIGIQTEGRNGPL 782

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +     +  D   ++     L+   +DQIP + R  +GVRL    +G 
Sbjct: 783 VGAARVLEDDEAMLITTGGTLVRTPVDQIPLIGRNTQGVRLIRLDEGE 830


>gi|37679431|ref|NP_934040.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016]
 gi|37198175|dbj|BAC94011.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016]
          Length = 900

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/817 (31%), Positives = 400/817 (48%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDEII +IRN   P            
Sbjct: 355 DHRREVVTRRTIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLESAGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E +++  +L S ++    I  E+  V++ F           +         A
Sbjct: 475 DEYKALLDEIKELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        + +   + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSADKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   + +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFSNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPVL 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     +G   +    
Sbjct: 715 DENGNPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKNDGD-VLTVTE 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +           RG  G +  K   R+G  + +
Sbjct: 774 NGYGKRTVLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810


>gi|289824701|ref|ZP_06544200.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 878

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|62180845|ref|YP_217262.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128478|gb|AAX66181.1| DNA gyrase, subunit A, type II topoisomerase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|312913262|dbj|BAJ37236.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
          Length = 878

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F           +         
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|188495176|ref|ZP_03002446.1| DNA gyrase, A subunit [Escherichia coli 53638]
 gi|194436036|ref|ZP_03068138.1| DNA gyrase, A subunit [Escherichia coli 101-1]
 gi|253772846|ref|YP_003035677.1| DNA gyrase subunit A [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162242|ref|YP_003045350.1| DNA gyrase subunit A [Escherichia coli B str. REL606]
 gi|300931424|ref|ZP_07146753.1| DNA gyrase, A subunit [Escherichia coli MS 187-1]
 gi|188490375|gb|EDU65478.1| DNA gyrase, A subunit [Escherichia coli 53638]
 gi|194424764|gb|EDX40749.1| DNA gyrase, A subunit [Escherichia coli 101-1]
 gi|242377866|emb|CAQ32633.1| DNA gyrase, subunit A, subunit of DNA gyrase [Escherichia coli
           BL21(DE3)]
 gi|253323890|gb|ACT28492.1| DNA gyrase, A subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974143|gb|ACT39814.1| DNA gyrase subunit A [Escherichia coli B str. REL606]
 gi|253978310|gb|ACT43980.1| DNA gyrase subunit A [Escherichia coli BL21(DE3)]
 gi|300460794|gb|EFK24287.1| DNA gyrase, A subunit [Escherichia coli MS 187-1]
 gi|323961537|gb|EGB57145.1| hypothetical protein ERGG_01998 [Escherichia coli H489]
 gi|323973067|gb|EGB68261.1| hypothetical protein ERHG_00995 [Escherichia coli TA007]
          Length = 875

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     EG   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGEGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGEGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|20090441|ref|NP_616516.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina
           acetivorans C2A]
 gi|19915456|gb|AAM04996.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina
           acetivorans C2A]
          Length = 929

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/770 (32%), Positives = 399/770 (51%), Gaps = 31/770 (4%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
             +            V A+ +   ++  Y+ YA+S I  RA+PD RDG KPVHRRI+ +M
Sbjct: 58  SDETEDEGPEPDNNGVTAILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSM 117

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E G+     +KKSAR+VG+V+GK HPHGD +VYDS+VR+ Q F  RYPLI GQGNFG+I
Sbjct: 118 KESGITHDKPYKKSARVVGDVLGKYHPHGDAAVYDSIVRMVQDFSLRYPLIDGQGNFGSI 177

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTE RM ++AE +L  ++++ V FR  Y+    EP V P+K PNLL NG++
Sbjct: 178 DGDEAAAMRYTEVRMDRIAEEMLTDIEKETVPFRPNYDGSLEEPEVLPAKLPNLLINGST 237

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT++  HN+ E+ +  L LIDNPE  + +L+  + GPDFPTG  I+     I  
Sbjct: 238 GIAVGMATNMAPHNISEVIDGTLMLIDNPETPVSELMTVVKGPDFPTGAHIL-GTAGIRS 296

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  ++RA   ++E+ +    I+VTE+PYQV K+R+IE IA+L+  K I  + D+
Sbjct: 297 AYTTGRGPVKIRAVAEIQELKKDREQIIVTELPYQVNKARMIENIAQLVREKVISGISDL 356

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+   ++  +  +++  ++  + MET F +    L     PQ + L  +L
Sbjct: 357 RDESDREGIRVVIELSKGTNARVVLNQLYKHTQMETTFGVINLALVD-GKPQELNLKQLL 415

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + +L +R E++ +R+ + ++  + R  IL+GL IA  NID ++A+I+             
Sbjct: 416 EIYLEYRMEIVQKRTLYDLKKSEERAHILEGLRIALDNIDAVVALIKGSANADEARQGLM 475

Query: 422 S---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               L E Q  AIL++RL+ L  LE  +I  EL+NL+    ++  +L S + ++  I  E
Sbjct: 476 DNFTLDEVQAKAILDMRLQRLTGLETKKILEELENLIKLIAELKKILESDELKYEIIRTE 535

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +  +KE +        RRT     +        + +I +  + V I+N G+I+ +   + 
Sbjct: 536 LLGLKEKYGD-----VRRTKIVHYTEE---VTDEDLIPEADVVVTITNSGYIKRIPLDTY 587

Query: 539 --------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGE 588
                    +  +  KE D ++    + T + IL  +  G+ Y      +     +  G+
Sbjct: 588 SMQRRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNRGRLYWQKVYEIPEGSRQSRGK 647

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           AI  L++L   + +        +     LL+ +  G       SE     + G   + + 
Sbjct: 648 AIVNLLELREGEMVNAMIPVKEFAEDRYLLMATRAGTTKKTPLSEFRNPRKAGIIAVSLD 707

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             +++  V+   G   V +V +  K + FS D +  M R  +GVR     DG   +V+  
Sbjct: 708 EGDELVKVLLTDGKQEVLMVSKKGKAIRFSEDDVRPMGRTARGVRGMIL-DGPEDEVVSM 766

Query: 704 K-ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + E  T +      + +        + +RGG G +      R+G F++
Sbjct: 767 DLVDETTTLLSVTENGFGKRTEYSQYPMHRRGGKGVITIVTNLRNG-FVA 815



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 5/159 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 +L++S  GKA      ++         ++ +I      ++V+  + D T  LL 
Sbjct: 718 TDGKQEVLMVSKKGKAIRFSEDDVRPMGRTARGVRGMILDGPEDEVVSMDLVDETTTLLS 777

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFL----KVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           V+  G     E S+   + R GK  +     + +     +      D + +      ++ 
Sbjct: 778 VTENGFGKRTEYSQYPMHRRGGKGVITIVTNLRNGFVANVKSVAEDDELMITSSEGIIIR 837

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
                I    R  +GVR+ + K G     +     E   
Sbjct: 838 VPAKDISIQGRNTQGVRIMNMKSGDKVVGMARIKAEDED 876


>gi|303228520|ref|ZP_07315349.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a]
 gi|302516812|gb|EFL58725.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a]
          Length = 821

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/760 (33%), Positives = 398/760 (52%), Gaps = 16/760 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++       N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G
Sbjct: 1   MADQQ-WSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDS
Sbjct: 60  MTPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDS 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++ + +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAV
Sbjct: 120 AAAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+C     LIDNP++++++L+  I GPDFPTG  ++  RE I ++Y  
Sbjct: 180 GMATNIPPHNLNEVCNGLEMLIDNPDVTVDELMTQIKGPDFPTGA-LILGREGIKKAYST 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RAR  +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES
Sbjct: 239 GRGSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++      + PD+++  ++  + ++  F + M  L     P+V+ L  +L  +L
Sbjct: 299 DRQGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVD-GHPRVLNLKEVLGYYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR +V+ RR+ F +   + R  IL+GLLIA  +IDE+IA IR+       +  ++ +F 
Sbjct: 358 DHRLDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RLR L  LE  +I+ E   LLA  E + ++L S  +Q   I  E+ ++
Sbjct: 418 LSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDELEDM 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ +           T         A  +  +   +   +   N    R+       +  
Sbjct: 478 KKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIG 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---GRGHGEAIQLLIDLNHN 599
           +  KE D +   +H  T + +L  ++ G+ Y L A  +         G A+  ++ L   
Sbjct: 538 MKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVG 597

Query: 600 QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + + T    +       L +V+  G        E     R G   + +   +++  V+  
Sbjct: 598 ESVTTMIDLERIHENVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDDGDRLISVIVT 657

Query: 657 TGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT--WI 712
           TG+   ++  +    +  + + +  M R   GVR    K G +         +       
Sbjct: 658 TGNQDILIGTKLGMAIRCNEEDVRLMKRAAHGVRGIKLKTGDVVVGAGVLESDESEAQVF 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   Y +        + KRGG+G+   +   ++G  ++
Sbjct: 718 TISEEGYGKRNEADAYNVQKRGGIGTKNFRINDKTGDVVA 757



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 10/197 (5%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+               L+A++  +GD L   +       IL+ +  G A      ++  
Sbjct: 623 VVKRTAIEEYRNIRRSGLNAINLDDGDRLISVIVTTGNQDILIGTKLGMAIRCNEEDVRL 682

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGK 639
            +         I L     +V A V +S     ++  +S +G     E        R G 
Sbjct: 683 MKRAA-HGVRGIKLKTGDVVVGAGVLESDESEAQVFTISEEGYGKRNEADAYNVQKRGGI 741

Query: 640 TFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPE-MSRG-KGVRLQSYK 693
                   +K   VV V      D V ++ E  K++ F+++ I     +   GV+ Q+  
Sbjct: 742 GTKNFRINDKTGDVVAVEVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLD 801

Query: 694 DGGISDVICFKICEGLT 710
           +G     I       + 
Sbjct: 802 EGDKVASIAVIPASEIE 818


>gi|282849502|ref|ZP_06258886.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745]
 gi|282580439|gb|EFB85838.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745]
          Length = 823

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/760 (33%), Positives = 396/760 (52%), Gaps = 16/760 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++       N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G
Sbjct: 1   MADQQ-WSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDS
Sbjct: 60  MTPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDS 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++   +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAV
Sbjct: 120 AAAMRYTEVRMAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+C     LIDNP++++++L+  I GPDFPTG  ++  RE I ++Y  
Sbjct: 180 GMATNIPPHNLNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGA-LILGREGIKKAYST 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RAR  +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES
Sbjct: 239 GRGSVKMRARATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++      + PD+++  ++  + ++  F + M  L     P+V+ L  +L  +L
Sbjct: 299 DRQGMRIVIELRADVQPDIVLNKLYKHTQLQETFGVIMLALVD-GHPRVLNLKEVLGYYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR +V+ RR+ F +   + R  IL+GLLIA  +IDE+IA IR+       +  ++ +F 
Sbjct: 358 DHRLDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RLR L  LE  +I+ E   LLA  E + ++L S  +Q   I  E+ ++
Sbjct: 418 LSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDELDDM 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ +           T         A  +  +   +   +   N    R+       +  
Sbjct: 478 KKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIG 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---GRGHGEAIQLLIDLNHN 599
           +  KE D +   +H  T + +L  ++ G+AY L A  +         G A+  ++ L   
Sbjct: 538 MKTKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVG 597

Query: 600 QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + + T    +       L +V+  G        E     R G   + +   +++  V   
Sbjct: 598 ESVTTMIDLERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDRLISVNVT 657

Query: 657 TGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT--WI 712
           TG+   ++  +    + FS   +  M R   GVR      G +         +       
Sbjct: 658 TGNQDILIGTKLGIAIRFSEHDVRLMKRAAHGVRGIKLNAGDVVVGAGVLNNDESEAQVF 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   + +  +     L KRGG GS   K   ++G  ++
Sbjct: 718 TISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVA 757



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 67/192 (34%), Gaps = 10/192 (5%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+               L+A++  EGD L           IL+ +  G A      ++  
Sbjct: 623 VVKRTAIEEYRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRL 682

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGK 639
            +         I LN    +V A V ++     ++  +S +G     +        R GK
Sbjct: 683 MKRAA-HGVRGIKLNAGDVVVGAGVLNNDESEAQVFTISEEGFGKRNDAEAYTLQKRGGK 741

Query: 640 TF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE-MSRG-KGVRLQSYK 693
                 +   + + + + V    D V ++ E  K++ F+++ I     +   GV+ Q+  
Sbjct: 742 GSKNFKITNKTGDVVAVEVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLD 801

Query: 694 DGGISDVICFKI 705
           +G     I    
Sbjct: 802 EGDKVASIAVIP 813


>gi|319640978|ref|ZP_07995686.1| A subunit [Bacteroides sp. 3_1_40A]
 gi|317387423|gb|EFV68294.1| A subunit [Bacteroides sp. 3_1_40A]
          Length = 855

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/759 (30%), Positives = 400/759 (52%), Gaps = 21/759 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L++Y+  PDFPTGG I      + ++Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E       I+V EIPY V K  LIE IA L+  K+I  +  + DES  +   
Sbjct: 241 MRAKAEI-ETHTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  +F ++ ++T F +N   L     P+++ L  +++ ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLFKMTALQTSFGVNNIALVH-GRPKMLNLKDLIRYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q 
Sbjct: 359 VIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELVEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           +       ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 ARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDSDDVVTAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  +  G        +     + G   + +  ++K+  V    G
Sbjct: 599 RVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNG 658

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
           D  + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  + + 
Sbjct: 659 DNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +  +        RGG G        ++GK ++
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 109/386 (28%), Gaps = 30/386 (7%)

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           Q+      + + +A+  E+L      +    D  VE+ +    A     EI+      + 
Sbjct: 436 QLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELVEVKEKYGDARR--SEIVYSSEEFNP 493

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                  +  +T + +  I    L   R      + S+      E         +     
Sbjct: 494 EDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTM 553

Query: 473 NQIAC-----EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                      ++  +         GR       +   D  T    +        + S+ 
Sbjct: 554 MFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHY 613

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL--STDGKAYTLPAGNLLSGRG 585
               +            +       +       D  ++    T+G    + A        
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 586 HGEA------------IQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEI 631
             E+              + +D +   +++            ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVV-KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KG 686
               R GK    ++  +K   +  +      + + ++ ++   +   + ++  M R  +G
Sbjct: 734 RKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLKVAEVRIMGRATQG 793

Query: 687 VRLQSY--KDGGISDVICFKICEGLT 710
           VRL +   ++  I  V      E +T
Sbjct: 794 VRLINLEKRNDQIGSVCKVTSEEEVT 819


>gi|158520690|ref|YP_001528560.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3]
 gi|158509516|gb|ABW66483.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3]
          Length = 830

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/754 (34%), Positives = 406/754 (53%), Gaps = 30/754 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + +S+   + + YL YA+S I  RA+PD+RDG KPVHRRI+ AM E+  ++   +KKSAR
Sbjct: 9   EEISIEKEMRKSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMHELKNEWNKPYKKSAR 68

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS AA RYTE RM 
Sbjct: 69  VVGDVIGKYHPHGDTAVYDAIVRMAQDFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVRMQ 128

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A L+L+ +D++ VD    Y+E  SEP+V PS+ P LL NG+SGIAVGMAT+IP HN+ 
Sbjct: 129 KLAHLMLEDIDKETVDLGLNYDESLSEPLVLPSRLPTLLINGSSGIAVGMATNIPPHNLS 188

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A  ALIDNP++S+E L++++ GPDFPT   I+   + I E Y  GRG  RVR R  
Sbjct: 189 EVADAITALIDNPDMSVEALMQHVPGPDFPT-CGIIHGTDGIAEGYATGRGKIRVRGRVF 247

Query: 258 VEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           VE+        IVV E+PYQV K+RLIEK+AEL+  K I  +  +RDES ++   +    
Sbjct: 248 VEKGKDDHDETIVVDELPYQVNKARLIEKVAELVKDKVIDGIRYVRDESDKEGMRIAIGL 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R+   D+++  ++  + +E  F +NM  +     P+++ L  IL+ ++ HR+E++ RR+
Sbjct: 308 KRNQFADVVINQLYKHTQLENTFGINMLAVV-NNRPELLTLKEILEYFILHRKEIIVRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  N+DE++A+IR    P       + +F LT+ Q  AIL+
Sbjct: 367 RFDLRKAEERAHILEGLKIALDNLDEVVALIRRSASPAEARTGLMEQFGLTQIQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I  E    L +    + +L S +   + I  E+ ++K  F       
Sbjct: 427 MRLQKLTGLEREKIIEEYKETLKQIAWFNEILGSERIVLDLIKKELADLKAEFGDE---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT         K  L + MI +E + V +S  G+I+          +      +A+  
Sbjct: 483 -RRTQI---MGQKKEILLEDMIAREEMVVTVSRAGYIKRNPITLYRKQRRGGRGKTAMGT 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           +E D +     A + D  L  +  G+ +      +        G AI  L++ N  +D+ 
Sbjct: 539 REDDFVDRLFVASSHDTFLFFTNRGRVFWRKVYEIPQAGRASRGTAIVNLLNFNEGEDLA 598

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
           T      +     +L+ + KG     +  +       G   L ++  +++  V    G  
Sbjct: 599 TVLSVPEFSPGLFVLMATRKGMVKKTDIMDYSRPRSGGLIALGLADGDELIAVRITDGSW 658

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +V +  +N K + F    +  M R  +GV+  + +      V    +  G T +      
Sbjct: 659 NVFLGSQNGKSVRFLESDVRPMGRLARGVKGMTLEKDDHV-VGMEVLSHGNTLMTITENG 717

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +        + +RGG G +  K   R+GK ++
Sbjct: 718 YGKRTEIDEYPVNRRGGKGVITIKTTKRNGKVVA 751



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 5/110 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKM 650
           + L  +  +V   V      L+ ++  G     E  E   N R GK  + + +     K+
Sbjct: 690 MTLEKDDHVVGMEVLSHGNTLMTITENGYGKRTEIDEYPVNRRGGKGVITIKTTKRNGKV 749

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             ++ V   D + ++ +  KL+   +  +  +SR  +GVRL   ++G   
Sbjct: 750 VAILLVENDDELMIMTDRGKLIRIPVGGVSVISRNTQGVRLIGMEEGETV 799


>gi|325518448|gb|EGC98150.1| DNA gyrase subunit A [Burkholderia sp. TJI49]
          Length = 851

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/782 (30%), Positives = 378/782 (48%), Gaps = 56/782 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLS 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NPE +I++L+E I  PDFPT G I+     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNPEATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------------------ 414
            R  +L+GL +A  NIDE IAII+    P                               
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAESENAAA 418

Query: 415 ----------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRDAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  VK  F  +             +          +    
Sbjct: 479 ADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVVTMSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ K       A   KE D ++    A+T D +L  S  G+ Y +   
Sbjct: 539 AGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYWIKVY 598

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G  I  +  L   + I        + +   + + +S G            
Sbjct: 599 EVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMATSLGTVKKTPLEAFSR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +KG   + +   + +       G   V +  +  K + F  + +  M R  +GVR   
Sbjct: 659 PMKKGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQ 718

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +DG     +     E  + + +    + +           RG  G +  +   R+GK +
Sbjct: 719 LEDGQQVIALLVAGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVV 778

Query: 752 SS 753
           ++
Sbjct: 779 AA 780



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 662 KGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLED 721

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 722 GQQVIALLVAGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 781

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 782 LVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 824


>gi|265753581|ref|ZP_06088936.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA]
 gi|263235295|gb|EEZ20819.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA]
          Length = 852

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/759 (30%), Positives = 400/759 (52%), Gaps = 21/759 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L++Y+  PDFPTGG I      + ++Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E       I+V EIPY V K  LIE IA L+  K+I  +  + DES  +   
Sbjct: 241 MRAKAEI-ETHTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  +F ++ ++T F +N   L     P+++ L  +++ ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLFKMTALQTSFGVNNIALVH-GRPKMLNLKDLIRYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q 
Sbjct: 359 VIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELIEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           +       ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 ARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDSDDVVTAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  +  G        +     + G   + +  ++K+  V    G
Sbjct: 599 RVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNG 658

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
           D  + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  + + 
Sbjct: 659 DNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +  +        RGG G        ++GK ++
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/392 (11%), Positives = 108/392 (27%), Gaps = 29/392 (7%)

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           Q+      + + +A+  E+L      +    D  +E+ +    A     EI+      + 
Sbjct: 436 QLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELIEVKEKYGDARR--SEIVYSSEEFNP 493

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                  +  +T + +  I    L   R      + S+      E         +     
Sbjct: 494 EDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTM 553

Query: 473 NQIAC-----EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                      ++  +         GR       +   D  T    +        + S+ 
Sbjct: 554 MFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHY 613

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL--STDGKAYTLPAGNLLSGRG 585
               +            +       +       D  ++    T+G    + A        
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 586 HGEA------------IQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEI 631
             E+              + +D +   +++            ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVV-KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KG 686
               R GK    ++  +K   +  +     G+ + ++ ++   +   + ++  M R  +G
Sbjct: 734 RKTNRGGKGVKTLNITDKTGKLVAIKSVTDGNDLMIINKSGITIRLKVAEVRIMGRATQG 793

Query: 687 VRLQSYKD-GGISDVICFKICEGLTWIDSAGR 717
           VRL + +        +C    E     D    
Sbjct: 794 VRLINLEKRNDQIGSVCKVTSEEEEITDENSN 825


>gi|224025875|ref|ZP_03644241.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM
           18228]
 gi|224019111|gb|EEF77109.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM
           18228]
          Length = 854

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/757 (31%), Positives = 394/757 (52%), Gaps = 21/757 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++ E ++Q + ++ VDF++ +++   EPVV P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLKKIGEDMMQDLYKETVDFQNNFDDTLQEPVVMPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +A IDN EI I+ L++YI  PDFPTGG I      + ++Y  GRG   +R
Sbjct: 184 HNLSEVIDACVAYIDNNEIDIDGLMQYIKAPDFPTGGYIY-GISGVRDAYETGRGRVIMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IVV EIPY V K  LIE IA L+  K+I  +  + DES  +   ++
Sbjct: 243 AKAEI-ESHPTHDKIVVNEIPYNVNKKELIESIASLVNEKKIDGISYVNDESDREGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +  +++  +F ++ ++T F +N   L     P+++ L  +++ ++ HR EV+ 
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVH-GRPKLLNLKDLIQLFVEHRHEVII 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDA 430
           RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF L+E Q  A
Sbjct: 361 RRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMERFQLSEVQARA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RLR L  L + Q+ +E ++L+ +    + +L + +     I  E+ EVKE +    
Sbjct: 421 IVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEILVNEELCKKVIKDELIEVKEKYGDKR 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                  +         A  +  +       +  +     R+     V       ++ D 
Sbjct: 481 RSEIVYASEEFNPEDFYADDEMVITISHLGYIKRTPLSEFRAQNRGGVGSKGSETRDEDF 540

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF-- 606
           ++    A   + +L  +  GK Y L    +  G    +  AIQ L++++ +  +      
Sbjct: 541 IEHIYPATMHNTMLFFTQKGKCYWLKVYEIPEGNKTSKGRAIQNLLNIDADDVVTAYLRV 600

Query: 607 ------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                  + ++  +L  +  G        +     + G   + +  ++++  V    G +
Sbjct: 601 KNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGNN 660

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWIDSA 715
            + +   N + + F    + EM R   GVR  +  + G   +  +IC K     T +  +
Sbjct: 661 EIVIANRNGRAIRFHESAVREMGRTATGVRGITLDEDGQDEVIGMICIKDPLKETIMVVS 720

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +  +        RGG G        ++GK ++
Sbjct: 721 ENGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757


>gi|223932337|ref|ZP_03624340.1| DNA gyrase, A subunit [Streptococcus suis 89/1591]
 gi|302023856|ref|ZP_07249067.1| DNA gyrase subunit A [Streptococcus suis 05HAS68]
 gi|330832892|ref|YP_004401717.1| DNA gyrase subunit A [Streptococcus suis ST3]
 gi|28189063|dbj|BAC56214.1| DNA gyrase subunit A [Streptococcus suis]
 gi|223899018|gb|EEF65376.1| DNA gyrase, A subunit [Streptococcus suis 89/1591]
 gi|329307115|gb|AEB81531.1| DNA gyrase subunit A [Streptococcus suis ST3]
          Length = 814

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/760 (31%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA   ++DNPE++  +++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F  + ++T F     +     VP+++ +  IL+ ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKQTQLQTNFSF-NMLAIQNGVPKILSVRQILESYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ +F L+  Q 
Sbjct: 359 VTRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSVRQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTEL--MVGEVLSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T DR+L  +  G+ Y L    +       +   +  L+ L  
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           N+ I T        ++   L   + +G       SE     + G   L +  ++++  V 
Sbjct: 592 NEAIQTIINVTKDQEADSYLFFATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   + +  +    + F+   +  M R   GVR  + ++G         I +    +
Sbjct: 652 LTNGQADIIMGTKFGYSVRFTETDVRNMGRTATGVRGINLREGDQLVGATM-ISDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + +           RGG G    K   ++G    
Sbjct: 711 VLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKNGSLAG 750



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E              E +      + +G ++              L AL+ KE D L 
Sbjct: 589 LEENEAIQTIINVTKDQEADSYLFFATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +    I++ +  G +      ++ +       ++  I+L     +V A +     
Sbjct: 649 NVFLTNGQADIIMGTKFGYSVRFTETDVRNMGRTATGVRG-INLREGDQLVGATMISDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE     R GK    +   +K   +  +  V+GD  + V+ +  
Sbjct: 708 EVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKNGSLAGLTTVSGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++    D   + ++ F + +     +   
Sbjct: 768 VIIRTSVANISQTGRSTMGVKVMRLNDE--AKIMTFALVDAAEIKEEKE 814


>gi|313203303|ref|YP_004041960.1| DNA gyrase subunit a [Paludibacter propionicigenes WB4]
 gi|312442619|gb|ADQ78975.1| DNA gyrase subunit A [Paludibacter propionicigenes WB4]
          Length = 872

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/776 (28%), Positives = 397/776 (51%), Gaps = 38/776 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ +  V++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR++  M+E+G +    
Sbjct: 2   IDQDRIIKVNIDEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGMNELGNNSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD S+Y +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVMGKYHPHGDSSIYGTLVRMAQHWSMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ +++E +L  +++D VDF+  +++   EP V PS+ PNLL NG+SGIAVGMAT++
Sbjct: 122 TEARLRKLSEDMLVDINKDTVDFQLNFDDTLKEPTVLPSRIPNLLVNGSSGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+ +A +A IDN +I I ++L+YI  PDFPTGG I+     + E++  GRG   
Sbjct: 182 APHNLSEVVDATIAYIDNNDIEISEILKYIKAPDFPTGG-IIYGYAGVKEAFETGRGRIV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR++  +E   +G   IV+ EIPYQV K  LI+ +  L+  K++  +  I DES  +   
Sbjct: 241 VRSKVEIETDAQGREKIVINEIPYQVNKVELIKAVVALVEDKKVEGIAHINDESDREGMR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  +F  + +++ F +N   L     P+++ +  ++  ++ HR EV
Sbjct: 301 IVVDVKRDANSSVVLNKLFKYTALQSSFSVNNIALVH-GRPRMLNVKDLIHYFVEHRHEV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQV 428
           + RR+ F +   ++R  +L+G +I   N+DE I IIR+   P      ++ RF L+E Q 
Sbjct: 360 VIRRTRFELGEAEKRAHLLEGFMIILDNLDEAIQIIRDSKTPDEARTRLMERFGLSEIQS 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  +E+ ++++E + ++     +  +L   + +   I  E+ EVK  +  
Sbjct: 420 RAIVEMRLRQLTGMEQDKLRAEYEEVMKLIAHLKEILEKIELRMQIIKDELLEVKAKYGD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           +       ++         A  +  +       +  +     R+     V       ++ 
Sbjct: 480 ARRTQIVYSSEEFNPEDFYADDEMIITISHLGYIKRTALSEFRAQGRGGVGSKGSDSRDE 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + +L  ++ GK Y L   ++  G  + +  AIQ +++++++  +    
Sbjct: 540 DFIEYIYPASMHNTMLFFTSKGKCYWLKVYDIPEGSKNSKGRAIQNMLNIDNDDKVNAFI 599

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    Y  +  L+  +  G              + G   + +  ++++  V    G
Sbjct: 600 RVKGLNDPEYTKSHYLIFATKNGVIKKTSLEAYSRPRQNGVNAITIREDDQVIQVRLTDG 659

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
           +  V +   N + + F   ++ EM R   GVR  +  + G   +  +IC    +    + 
Sbjct: 660 NSEVLMANRNGRAIRFHESKVREMGRTATGVRGMTLDEDGEDELVGMICVNKEDNENIMV 719

Query: 714 SAGRSYNRSENDLL------------------GWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +                          +  RGG G        ++GK +
Sbjct: 720 VSQQGYGKRTLLDEVDDEGNLMLDENGETIPVYRVTNRGGKGVKTMNITDKTGKLV 775



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/395 (10%), Positives = 103/395 (26%), Gaps = 42/395 (10%)

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           ++      + + +AH +E+L +         D  +E+      A        +   N + 
Sbjct: 437 KLRAEYEEVMKLIAHLKEILEKIELRMQIIKDELLEVKAKYGDARRTQIVYSSEEFNPED 496

Query: 413 PKPVMVSRFSLTE---NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                    +++     +  A+   R +    +      S  ++ +              
Sbjct: 497 FYADDEMIITISHLGYIKRTALSEFRAQGRGGVGSKGSDSRDEDFIEYIYPASMHNTMLF 556

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
                    ++            GR       +   DK      +          S+   
Sbjct: 557 FTSKGKCYWLKVYDIPEGSKNSKGRAIQNMLNIDNDDKVNAFIRVKGLNDPEYTKSHYLI 616

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS--TDGKAYTLPAGNLLSGRGHG 587
             +        S   +       +       D  ++    TDG +  L A          
Sbjct: 617 FATKNGVIKKTSLEAYSRPRQNGVNAITIREDDQVIQVRLTDGNSEVLMANRNGRAIRFH 676

Query: 588 EA------------IQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESE--- 630
           E+              + +D +   ++V     +      ++VVS +G        E   
Sbjct: 677 ESKVREMGRTATGVRGMTLDEDGEDELVGMICVNKEDNENIMVVSQQGYGKRTLLDEVDD 736

Query: 631 ---------------IIANTRKGKTF--LKVSSE-EKMKLVV-KVTGDHVAVVGENRKLL 671
                               R GK    + ++ +  K+  +      + + ++ ++   +
Sbjct: 737 EGNLMLDENGETIPVYRVTNRGGKGVKTMNITDKTGKLVTIKNVTDENDLMIINKSGITI 796

Query: 672 IFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
              +     M R  +GVRL + +          K+
Sbjct: 797 RLKVADFRVMGRATQGVRLINLEKRNDEIASVCKV 831


>gi|269798887|ref|YP_003312787.1| DNA gyrase subunit alpha [Veillonella parvula DSM 2008]
 gi|269095516|gb|ACZ25507.1| DNA gyrase, A subunit [Veillonella parvula DSM 2008]
          Length = 822

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/760 (33%), Positives = 395/760 (51%), Gaps = 16/760 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++       N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G
Sbjct: 1   MADQQ-WSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDS
Sbjct: 60  MTPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDS 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++   +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAV
Sbjct: 120 AAAMRYTEVRMAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+C     LIDNP++++++L+  I GPDFPTG  ++  RE I ++Y  
Sbjct: 180 GMATNIPPHNLNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGA-LILGREGIKKAYST 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RAR  +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES
Sbjct: 239 GRGSVKMRARATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++      + PD+++  ++  + ++  F + M  L     P+V+ L  +L  +L
Sbjct: 299 DRQGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVD-GHPRVLNLKEVLGYYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR +V+ RR+ F +   + R  IL+GLLIA  +IDE+IA IR+       +  ++ +F 
Sbjct: 358 DHRLDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RLR L  LE  +I+ E   LLA  E + ++L S  +Q   I  E+ ++
Sbjct: 418 LSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILGSEARQRQIIKDELDDM 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ +           T         A  +  +   +   +   N    R+       +  
Sbjct: 478 KKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIG 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---GRGHGEAIQLLIDLNHN 599
           +  KE D +   +H  T + +L  ++ G+AY L A  +         G A+  ++ L   
Sbjct: 538 MKTKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVG 597

Query: 600 QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + + T    +       L +V+  G        E     R G   + +   +++  V   
Sbjct: 598 ESVTTMIDLERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDRLISVNVT 657

Query: 657 TGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF--KICEGLTWI 712
           TG+   ++  +    + FS   +  M R   GVR      G +                 
Sbjct: 658 TGNQDILIGTKLGIAIRFSEHDVRLMKRAAHGVRGIKLNAGDVVVGAGVLNTDESEAQVF 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   + +  +     L KRGG GS   K   ++G  ++
Sbjct: 718 TISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVA 757



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 10/197 (5%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+               L+A++  EGD L           IL+ +  G A      ++  
Sbjct: 623 VVKRTAIEEYRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRL 682

Query: 583 GRGHGEAIQLLIDLNHNQDIVT--AFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGK 639
            +         I LN    +V       D    ++  +S +G     +        R GK
Sbjct: 683 MKRAA-HGVRGIKLNAGDVVVGAGVLNTDESEAQVFTISEEGFGKRNDAEAYTLQKRGGK 741

Query: 640 TF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE-MSRG-KGVRLQSYK 693
                 +   + + + + V    D V ++ E  K++ F+++ I     +   GV+ Q+  
Sbjct: 742 GSKNFKITNKTGDVVAVEVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLD 801

Query: 694 DGGISDVICFKICEGLT 710
           +G     I       + 
Sbjct: 802 EGDKVASIAVIPGAEIE 818


>gi|324112768|gb|EGC06744.1| hypothetical protein ERIG_02373 [Escherichia fergusonii B253]
          Length = 878

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|218548315|ref|YP_002382106.1| DNA gyrase subunit A [Escherichia fergusonii ATCC 35469]
 gi|218355856|emb|CAQ88469.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia
           fergusonii ATCC 35469]
          Length = 878

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ S +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDL 848


>gi|152979411|ref|YP_001345040.1| DNA gyrase subunit A [Actinobacillus succinogenes 130Z]
 gi|150841134|gb|ABR75105.1| DNA gyrase, A subunit [Actinobacillus succinogenes 130Z]
          Length = 890

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/814 (30%), Positives = 389/814 (47%), Gaps = 73/814 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M + G     
Sbjct: 2   SELSQDITPVSIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNTHNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+ KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  AYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA IDN +ISI++L+++I GPDFPT   ++  R  I E+Y+ GRG  
Sbjct: 182 IPPHNLGEVMDGCLAYIDNEDISIDELMQFIPGPDFPTAA-LINGRRGIEEAYKTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +    +G   IVVTEIPYQV K++L+EKI ELI  K+I  +  I D S ++  
Sbjct: 241 YVRAKAEIVTNDKGREQIVVTEIPYQVNKAKLVEKIGELIREKKIEGISGILDLSNKEGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++ HRRE
Sbjct: 301 RLEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDH-GQPKLFNLKQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ + ++    R  IL+GL IA  NID +I +IR                      
Sbjct: 360 VVTRRTVYELRKARERAHILEGLAIALANIDPVINLIRASKTADEAREGLLARAWELGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V   ++ L+E Q  AIL LRL  L  LE  +I SE   
Sbjct: 420 APMLEAAGVDVSRPDDLPAECGVREGQYYLSETQARAILELRLHRLTGLEHEKIVSEYQE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  +   +L S ++    I  E+  VK  F+ +        +         A     
Sbjct: 480 ILVQIGEYLHILTSIERLREVIREELELVKTNFNDARRTEITTASSDINLEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L        G  I  ++ L  N+ I        YD    +L+ ++ G       
Sbjct: 600 WLKVYQLPEASRGARGRPIVNILPLEENERITAILPVASYDEDKFVLMATAGGIVKKTAL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E       G   + +  E+++  V    G + + +     +++ F+   +  M R   G
Sbjct: 660 TEFSRPRSNGIIAVNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESAVRAMGRTATG 719

Query: 687 VRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGRSY 719
           VR                               D  I  V+   + +     + +    Y
Sbjct: 720 VRGIKLALTNDLSDEESAVEIEEVSEDNSQESLDLNIDKVVSLVVPKNDGEILTATQNGY 779

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           R   G +  K   R+GK +++
Sbjct: 780 GKRTKLEEYPTKSRNTKGVISIKVSERNGKVVAA 813



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V  +  ++L  +  G     +  E    +R  K  + +       K+    
Sbjct: 755 NIDKVVSLVVPKNDGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERNGKVVAAT 814

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V   D + ++ +   L+   + ++  + R  +GVRL    +      +
Sbjct: 815 QVEEADQIMLITDAGTLVRTRVTEVSVVGRNTQGVRLIRTAEDEQVVSL 863


>gi|29346309|ref|NP_809812.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338204|gb|AAO76006.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482]
          Length = 858

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/758 (31%), Positives = 394/758 (51%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++   +EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A IDN EI++E+L+ Y+  PDFPTGG I      + E Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIY-GISGVREGYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  D   
Sbjct: 241 MRAKAEI-ETGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTALQTSFGVNNVALVH-GRPKTLNLRDMIKYFVEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDA 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDSVTAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    Y ++  +L  + KG        +     + G   + +  ++ +  V    G
Sbjct: 599 RVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  + + 
Sbjct: 659 NNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVIGMICIKDLETESVMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +           RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLV 756


>gi|158423631|ref|YP_001524923.1| DNA topoisomerase IV subunit A [Azorhizobium caulinodans ORS 571]
 gi|158330520|dbj|BAF88005.1| gram negative topoisomerase IV subunit A [Azorhizobium caulinodans
           ORS 571]
          Length = 745

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/745 (54%), Positives = 546/745 (73%), Gaps = 2/745 (0%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           + +      +V+ V L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI+HAM ++ L
Sbjct: 3   TKTLPPGGGSVEPVDLKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILHAMRQLKL 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D G+ FKK AR+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPL+ GQGNFGN+DGD+A
Sbjct: 63  DPGSGFKKCARVVGDVIGKFHPHGDQAVYDALVRLAQDFAQRYPLVDGQGNFGNVDGDNA 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T+ A L+L G+D+DAVDFR TY+  + EPVV P+ FPNLLANG+ GIAVG
Sbjct: 123 AAMRYTEARLTETARLLLDGIDDDAVDFRPTYDGSEEEPVVLPAAFPNLLANGSQGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MATSIP HN  E+ +A+L L+++P      LL+++ GPDFPTGGI+VE      E+Y  G
Sbjct: 183 MATSIPPHNAAELLDASLHLLEHPNAPASDLLQFVPGPDFPTGGILVEDPVGTAEAYATG 242

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG FRVRARW  EE GRG++ +VVTEIPY V KSRL+EKIAEL+  K++PLL D+RDESA
Sbjct: 243 RGAFRVRARWHKEETGRGTYVVVVTEIPYGVPKSRLVEKIAELLTDKKLPLLADVRDESA 302

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ED+R+VL P+ R++D ++LMES+F L+++E+R  LNMNVL  G+VP+V+ L   L+EWL 
Sbjct: 303 EDIRLVLEPRARTVDAEVLMESLFKLTELESRVSLNMNVLVRGQVPKVLSLADALREWLD 362

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           HRREVL RRS  R+  I  R+E+L G LIAYLN+DE+I IIR ED+PK  ++  F LT+ 
Sbjct: 363 HRREVLLRRSRNRLSQIAHRLEVLGGYLIAYLNLDEVIRIIREEDEPKVELMRTFELTDL 422

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q ++ILN+RLRSLR+LEE +++ E   L  E+E+++ L+ S   QW  I  EIRE ++ +
Sbjct: 423 QAESILNMRLRSLRRLEEMELRKEHAALTKEQEQLNKLVASEAAQWKAIGKEIRETRKTY 482

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
              T++GRRRT F       ++   +A++E+EPIT+V+S +GWIR+LK H  D++ + FK
Sbjct: 483 GPDTEIGRRRTDFAVPPDVHESAFTEALVEREPITIVMSAKGWIRALKGHVADVTGVPFK 542

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
             D+L  A +A TT +I++LS++G+ +TL A  L  GRGHGE ++L+I+L    +IV+ F
Sbjct: 543 GDDTLAHAFYAETTSKIMVLSSNGRFFTLDAAKLPGGRGHGEPVRLMIELEQEAEIVSVF 602

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
            +    KL+V S +G  F+V E + +ANTRKGK  L V + +   L V   GD VAV+G+
Sbjct: 603 AHRPGGKLIVASREGRGFVVAEDDCLANTRKGKQVLGVDAPDAAVLAVPADGDTVAVIGD 662

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           NRKLL+F I Q+PEM+RG+GVRLQ YK+GG+SD+  F   +GLTW DS+GR++  +E  L
Sbjct: 663 NRKLLLFPIAQVPEMTRGRGVRLQRYKEGGLSDLKVFNRADGLTWEDSSGRTWTVTE--L 720

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFL 751
           L W G+R   G L PKGFPR+ KF 
Sbjct: 721 LDWQGERASSGRLPPKGFPRNNKFA 745


>gi|320667814|gb|EFX34722.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. LSU-61]
          Length = 875

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIASF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|298385664|ref|ZP_06995222.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14]
 gi|298261805|gb|EFI04671.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14]
          Length = 858

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/758 (31%), Positives = 394/758 (51%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++   +EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A IDN EI++E+L+ Y+  PDFPTGG I      + E Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIY-GISGVREGYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  D   
Sbjct: 241 MRAKAEI-ETGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTALQTSFGVNNVALVH-GRPKTLNLRDMIKYFVEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDA 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDSVTAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    Y ++  +L  + KG        +     + G   + +  ++ +  V    G
Sbjct: 599 RVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  + + 
Sbjct: 659 NNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVIGMICIKDLETESVMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +           RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLV 756


>gi|317503406|ref|ZP_07961450.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae
           DSM 15606]
 gi|315665501|gb|EFV05124.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae
           DSM 15606]
          Length = 867

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/772 (29%), Positives = 391/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDNDRILRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG+IDGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E I+  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHIMDDLEKDTVDMTNNFDDTLVEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ E   A IDNP+I ++ L++YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNMPTHNLSEVIEGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIY-GIQGVRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E G     IVVTEIPY V K  LIE IA+L+   RI  + +  DES
Sbjct: 240 GRGRIVMRAKAEI-ESGESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVIDVKRDANANVILNKLFKMTALQSSFSVNNIALVK-GRPRLLSLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P         RF+
Sbjct: 358 EHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQRFN 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L  +   +  +L+  +     +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYLQQILDDPELCKKVMKDELNEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE +        RRT   E+  + +    +     +P+ + +S+ G+I+           
Sbjct: 478 KEKYGDE-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFREQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V   A   +E D  +    A     +L  +  G+ Y L    +  G  + +  AIQ 
Sbjct: 530 RGGVGAKAARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++++  +  I             ++++  ++  +  G                G   + +
Sbjct: 590 MLNIESDDAINAILRLTTLTDESFNNSHYVIFATKNGTVKKTSLEAYSRPRANGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDV 700
              +++  V    G + + +   N + + F+ + I  M R   GVR       D  +  +
Sbjct: 650 VDGDEVVDVRLTNGSNELIMANRNGRAVRFNENTIRTMGRTATGVRGMRLDGGDDEVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     E  + +  + + Y +        +  RGG G        ++G+ +S
Sbjct: 710 VTVNEAESESVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTGRLVS 761



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/285 (10%), Positives = 96/285 (33%), Gaps = 16/285 (5%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             + +  +           +  +        +   I   +         + +   R TT 
Sbjct: 552 ATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKGRAIQNML---NIESDDAINAILRLTTL 608

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            + S  +   +       +  TV  ++       +++   + A++  +GD +      + 
Sbjct: 609 TDESFNNSHYVI---FATKNGTVKKTSLEAYSRPRAN--GVIAINIVDGDEVVDVRLTNG 663

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVV 617
           ++ +++ + +G+A       + +       ++ +     + ++V     +   +  ++VV
Sbjct: 664 SNELIMANRNGRAVRFNENTIRTMGRTATGVRGMRLDGGDDEVVGMVTVNEAESESVMVV 723

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVV-KVTGDHVAVVGENRKLLIF 673
           S +G     +  +     R GK    +       ++  +      + + ++ ++  ++  
Sbjct: 724 SEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTGRLVSIKNVTDENDLMIINKSGVVIRL 783

Query: 674 SIDQIPEMSRG-KGVRLQSY-KDGGISDVICFKICEGLTWIDSAG 716
           ++  +  M R  +GVRL +  K   +   +C  +   L       
Sbjct: 784 AVADVRVMGRATQGVRLINLAKKNDVIASVCKVMSSELEATVEEE 828


>gi|157161714|ref|YP_001459032.1| DNA gyrase subunit A [Escherichia coli HS]
 gi|157067394|gb|ABV06649.1| DNA gyrase, A subunit [Escherichia coli HS]
          Length = 875

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|194433361|ref|ZP_03065641.1| DNA gyrase, A subunit [Shigella dysenteriae 1012]
 gi|194418455|gb|EDX34544.1| DNA gyrase, A subunit [Shigella dysenteriae 1012]
 gi|320178796|gb|EFW53759.1| DNA gyrase subunit A [Shigella boydii ATCC 9905]
 gi|332093869|gb|EGI98923.1| DNA gyrase, A subunit [Shigella boydii 5216-82]
 gi|332096157|gb|EGJ01160.1| DNA gyrase, A subunit [Shigella dysenteriae 155-74]
          Length = 875

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDGKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|218700698|ref|YP_002408327.1| DNA gyrase subunit A [Escherichia coli IAI39]
 gi|218370684|emb|CAR18495.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           IAI39]
          Length = 875

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 395/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L   +    G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPGATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|15832368|ref|NP_311141.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai]
 gi|168749632|ref|ZP_02774654.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113]
 gi|168754976|ref|ZP_02779983.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401]
 gi|168761339|ref|ZP_02786346.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501]
 gi|168767849|ref|ZP_02792856.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486]
 gi|168773053|ref|ZP_02798060.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196]
 gi|168780078|ref|ZP_02805085.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076]
 gi|168787135|ref|ZP_02812142.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869]
 gi|168798393|ref|ZP_02823400.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508]
 gi|195935604|ref|ZP_03080986.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC4024]
 gi|208809585|ref|ZP_03251922.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208814055|ref|ZP_03255384.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208818870|ref|ZP_03259190.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209395953|ref|YP_002271637.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115]
 gi|217326866|ref|ZP_03442949.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218705761|ref|YP_002413280.1| DNA gyrase subunit A [Escherichia coli UMN026]
 gi|254794122|ref|YP_003078959.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. TW14359]
 gi|261223316|ref|ZP_05937597.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259134|ref|ZP_05951667.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291283475|ref|YP_003500293.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615]
 gi|293405697|ref|ZP_06649689.1| DNA gyrase subunit A [Escherichia coli FVEC1412]
 gi|293410594|ref|ZP_06654170.1| A subunit [Escherichia coli B354]
 gi|293415524|ref|ZP_06658167.1| A subunit [Escherichia coli B185]
 gi|298381378|ref|ZP_06990977.1| DNA gyrase subunit A [Escherichia coli FVEC1302]
 gi|300936783|ref|ZP_07151676.1| DNA gyrase, A subunit [Escherichia coli MS 21-1]
 gi|331653665|ref|ZP_08354666.1| DNA gyrase, A subunit [Escherichia coli M718]
 gi|331673745|ref|ZP_08374508.1| DNA gyrase, A subunit [Escherichia coli TA280]
 gi|331683907|ref|ZP_08384503.1| DNA gyrase, A subunit [Escherichia coli H299]
 gi|13362583|dbj|BAB36537.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai]
 gi|187771122|gb|EDU34966.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196]
 gi|188016049|gb|EDU54171.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113]
 gi|189002080|gb|EDU71066.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076]
 gi|189357583|gb|EDU76002.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401]
 gi|189362953|gb|EDU81372.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486]
 gi|189368282|gb|EDU86698.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501]
 gi|189372927|gb|EDU91343.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869]
 gi|189378991|gb|EDU97407.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508]
 gi|208729386|gb|EDZ78987.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208735332|gb|EDZ84019.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208738993|gb|EDZ86675.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209157353|gb|ACI34786.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209765558|gb|ACI81091.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765560|gb|ACI81092.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765562|gb|ACI81093.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765564|gb|ACI81094.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765566|gb|ACI81095.1| DNA gyrase subunit A [Escherichia coli]
 gi|217319233|gb|EEC27658.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218432858|emb|CAR13752.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           UMN026]
 gi|254593522|gb|ACT72883.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. TW14359]
 gi|284922222|emb|CBG35304.1| DNA gyrase subunit A [Escherichia coli 042]
 gi|290763348|gb|ADD57309.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615]
 gi|291427905|gb|EFF00932.1| DNA gyrase subunit A [Escherichia coli FVEC1412]
 gi|291433172|gb|EFF06151.1| A subunit [Escherichia coli B185]
 gi|291471062|gb|EFF13546.1| A subunit [Escherichia coli B354]
 gi|298278820|gb|EFI20334.1| DNA gyrase subunit A [Escherichia coli FVEC1302]
 gi|300458113|gb|EFK21606.1| DNA gyrase, A subunit [Escherichia coli MS 21-1]
 gi|320192148|gb|EFW66793.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC1212]
 gi|320641057|gb|EFX10536.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. G5101]
 gi|320646446|gb|EFX15365.1| DNA gyrase subunit A [Escherichia coli O157:H- str. 493-89]
 gi|320651543|gb|EFX19923.1| DNA gyrase subunit A [Escherichia coli O157:H- str. H 2687]
 gi|320657295|gb|EFX25097.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320663122|gb|EFX30435.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. USDA 5905]
 gi|323168608|gb|EFZ54288.1| DNA gyrase, A subunit [Shigella sonnei 53G]
 gi|326339578|gb|EGD63389.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1125]
 gi|326344040|gb|EGD67801.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1044]
 gi|331048514|gb|EGI20590.1| DNA gyrase, A subunit [Escherichia coli M718]
 gi|331069018|gb|EGI40410.1| DNA gyrase, A subunit [Escherichia coli TA280]
 gi|331078859|gb|EGI50061.1| DNA gyrase, A subunit [Escherichia coli H299]
          Length = 875

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|26248619|ref|NP_754659.1| DNA gyrase subunit A [Escherichia coli CFT073]
 gi|91211524|ref|YP_541510.1| DNA gyrase subunit A [Escherichia coli UTI89]
 gi|117624425|ref|YP_853338.1| DNA gyrase subunit A [Escherichia coli APEC O1]
 gi|215487448|ref|YP_002329879.1| DNA gyrase subunit A [Escherichia coli O127:H6 str. E2348/69]
 gi|218559148|ref|YP_002392061.1| DNA gyrase subunit A [Escherichia coli S88]
 gi|218690394|ref|YP_002398606.1| DNA gyrase subunit A [Escherichia coli ED1a]
 gi|227887288|ref|ZP_04005093.1| DNA gyrase subunit A [Escherichia coli 83972]
 gi|237704706|ref|ZP_04535187.1| subunit A [Escherichia sp. 3_2_53FAA]
 gi|300983263|ref|ZP_07176502.1| DNA gyrase, A subunit [Escherichia coli MS 45-1]
 gi|301048980|ref|ZP_07195968.1| DNA gyrase, A subunit [Escherichia coli MS 185-1]
 gi|306814656|ref|ZP_07448818.1| DNA gyrase subunit A [Escherichia coli NC101]
 gi|331658310|ref|ZP_08359272.1| DNA gyrase, A subunit [Escherichia coli TA206]
 gi|26109024|gb|AAN81227.1|AE016763_186 DNA gyrase subunit A [Escherichia coli CFT073]
 gi|91073098|gb|ABE07979.1| DNA gyrase subunit A [Escherichia coli UTI89]
 gi|115513549|gb|ABJ01624.1| DNA gyrase subunit A [Escherichia coli APEC O1]
 gi|215265520|emb|CAS09923.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218365917|emb|CAR03659.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           S88]
 gi|218427958|emb|CAR08878.2| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           ED1a]
 gi|222033992|emb|CAP76733.1| DNA gyrase subunit A [Escherichia coli LF82]
 gi|226901072|gb|EEH87331.1| subunit A [Escherichia sp. 3_2_53FAA]
 gi|227835638|gb|EEJ46104.1| DNA gyrase subunit A [Escherichia coli 83972]
 gi|294491822|gb|ADE90578.1| DNA gyrase, A subunit [Escherichia coli IHE3034]
 gi|300299211|gb|EFJ55596.1| DNA gyrase, A subunit [Escherichia coli MS 185-1]
 gi|300408597|gb|EFJ92135.1| DNA gyrase, A subunit [Escherichia coli MS 45-1]
 gi|305852050|gb|EFM52502.1| DNA gyrase subunit A [Escherichia coli NC101]
 gi|307554297|gb|ADN47072.1| DNA gyrase [Escherichia coli ABU 83972]
 gi|307626231|gb|ADN70535.1| DNA gyrase subunit A [Escherichia coli UM146]
 gi|312946852|gb|ADR27679.1| DNA gyrase subunit A [Escherichia coli O83:H1 str. NRG 857C]
 gi|315285852|gb|EFU45292.1| DNA gyrase, A subunit [Escherichia coli MS 110-3]
 gi|315292186|gb|EFU51538.1| DNA gyrase, A subunit [Escherichia coli MS 153-1]
 gi|315298065|gb|EFU57334.1| DNA gyrase, A subunit [Escherichia coli MS 16-3]
 gi|320196099|gb|EFW70723.1| DNA gyrase subunit A [Escherichia coli WV_060327]
 gi|323188042|gb|EFZ73337.1| DNA gyrase, A subunit [Escherichia coli RN587/1]
 gi|323952025|gb|EGB47899.1| hypothetical protein ERKG_01737 [Escherichia coli H252]
 gi|323955999|gb|EGB51752.1| hypothetical protein ERLG_02778 [Escherichia coli H263]
 gi|324006614|gb|EGB75833.1| DNA gyrase, A subunit [Escherichia coli MS 57-2]
 gi|331056558|gb|EGI28567.1| DNA gyrase, A subunit [Escherichia coli TA206]
          Length = 875

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ S +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDL 848


>gi|170019456|ref|YP_001724410.1| DNA gyrase subunit A [Escherichia coli ATCC 8739]
 gi|169754384|gb|ACA77083.1| DNA gyrase, A subunit [Escherichia coli ATCC 8739]
          Length = 875

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NI  II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIAPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|319898853|ref|YP_004158946.1| topoisomerase IV subunit A [Bartonella clarridgeiae 73]
 gi|319402817|emb|CBI76368.1| topoisomerase IV subunit A [Bartonella clarridgeiae 73]
          Length = 749

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/747 (61%), Positives = 588/747 (78%), Gaps = 2/747 (0%)

Query: 6   ISNS--NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+    +  +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRIIHAM  
Sbjct: 1   MSDEMIRSFDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRL 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L+ G A+ K ARIVG+V+GKLHPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDG
Sbjct: 61  LRLNPGKAYTKCARIVGDVMGKLHPHGDVSIYDALVRLAQSFAVRYPLIDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+SGI
Sbjct: 121 DNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP HNV E+C+AAL LI NP    + L ++++GPDFPTGGI+VE ++SI +SY
Sbjct: 181 AVGMATSIPPHNVAELCDAALYLIANPHADHKDLNQFVLGPDFPTGGILVEPKKSIEDSY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+R+RW  EE  RGS+ IVVTEIPYQ+QKSRLIEK AEL++A+R+P+LEDI D
Sbjct: 241 RTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDIHD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAED+RIVL PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP V+ L   L++
Sbjct: 301 ESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQ 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL HR+EVL RRS++R+  ID R+EIL+G LIAYLN+DE++ IIR  D+PK  ++  F L
Sbjct: 361 WLQHRKEVLIRRSNYRLNEIDCRLEILQGYLIAYLNLDELVQIIRENDEPKKELIVCFKL 420

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TENQ ++ILN+RLRSLRKLEE++I+ E D+L  EKEK+ +LL S  +QW  IA EI  V+
Sbjct: 421 TENQAESILNMRLRSLRKLEEFEIRKEFDSLKIEKEKLQNLLASNIKQWKIIAEEITRVR 480

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F   T LG+RRTTF +  R D   + QAMIEKEP+T+VIS +GW+R+LK H  D   L
Sbjct: 481 KSFGPDTFLGKRRTTFEDAPRHDVNDIHQAMIEKEPVTIVISEKGWMRALKGHLNDYKTL 540

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FKEGD LK+A  A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D++   DI+
Sbjct: 541 SFKEGDCLKLAFPAFTTDKIIVISTGGKFFTISANTLPGGRGHGEPIRILVDMDKEHDIL 600

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           TAFVY+   K L++SS GN FIV E +IIANTRKGK  + + S + +KL + V GD++AV
Sbjct: 601 TAFVYNMEGKRLLISSYGNGFIVSEIDIIANTRKGKQVMNIKSPDSLKLCIPVKGDYIAV 660

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           VGENRK+LIFSI+QIPEMSRGKGVRLQ YKDGG+ D   F + EGL+W D+A RS+NR  
Sbjct: 661 VGENRKMLIFSIEQIPEMSRGKGVRLQRYKDGGVVDAKTFTLSEGLSWQDTAERSFNRQA 720

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           ++L+ W+G R G G  VPKGFP+SGKF
Sbjct: 721 DELVEWMGTRAGAGRFVPKGFPKSGKF 747


>gi|194427093|ref|ZP_03059644.1| DNA gyrase, A subunit [Escherichia coli B171]
 gi|194414714|gb|EDX30985.1| DNA gyrase, A subunit [Escherichia coli B171]
          Length = 875

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786


>gi|320183333|gb|EFW58187.1| DNA gyrase subunit A [Shigella flexneri CDC 796-83]
          Length = 875

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSLQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|323977572|gb|EGB72658.1| hypothetical protein ERFG_01094 [Escherichia coli TW10509]
          Length = 875

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.7 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ S +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDL 848


>gi|16130166|ref|NP_416734.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24113610|ref|NP_708120.1| DNA gyrase subunit A [Shigella flexneri 2a str. 301]
 gi|30063664|ref|NP_837835.1| DNA gyrase subunit A [Shigella flexneri 2a str. 2457T]
 gi|82544525|ref|YP_408472.1| DNA gyrase subunit A [Shigella boydii Sb227]
 gi|89109048|ref|AP_002828.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. W3110]
 gi|110642439|ref|YP_670169.1| DNA gyrase subunit A [Escherichia coli 536]
 gi|157154912|ref|YP_001463578.1| DNA gyrase subunit A [Escherichia coli E24377A]
 gi|170081849|ref|YP_001731169.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. DH10B]
 gi|187732271|ref|YP_001881059.1| DNA gyrase subunit A [Shigella boydii CDC 3083-94]
 gi|191166476|ref|ZP_03028306.1| DNA gyrase, A subunit [Escherichia coli B7A]
 gi|191169998|ref|ZP_03031552.1| DNA gyrase, A subunit [Escherichia coli F11]
 gi|193062390|ref|ZP_03043485.1| DNA gyrase, A subunit [Escherichia coli E22]
 gi|193068181|ref|ZP_03049145.1| DNA gyrase, A subunit [Escherichia coli E110019]
 gi|209919683|ref|YP_002293767.1| DNA gyrase subunit A [Escherichia coli SE11]
 gi|218554794|ref|YP_002387707.1| DNA gyrase subunit A [Escherichia coli IAI1]
 gi|218695837|ref|YP_002403504.1| DNA gyrase subunit A [Escherichia coli 55989]
 gi|238901404|ref|YP_002927200.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           BW2952]
 gi|256017607|ref|ZP_05431472.1| DNA gyrase subunit A [Shigella sp. D9]
 gi|260844827|ref|YP_003222605.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009]
 gi|260856281|ref|YP_003230172.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368]
 gi|260868961|ref|YP_003235363.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128]
 gi|293446574|ref|ZP_06662996.1| A subunit [Escherichia coli B088]
 gi|300822680|ref|ZP_07102818.1| DNA gyrase, A subunit [Escherichia coli MS 119-7]
 gi|300918607|ref|ZP_07135195.1| DNA gyrase, A subunit [Escherichia coli MS 115-1]
 gi|300981257|ref|ZP_07175434.1| DNA gyrase, A subunit [Escherichia coli MS 200-1]
 gi|301024225|ref|ZP_07187922.1| DNA gyrase, A subunit [Escherichia coli MS 196-1]
 gi|301328721|ref|ZP_07221774.1| DNA gyrase, A subunit [Escherichia coli MS 78-1]
 gi|301647679|ref|ZP_07247473.1| DNA gyrase, A subunit [Escherichia coli MS 146-1]
 gi|307138889|ref|ZP_07498245.1| DNA gyrase subunit A [Escherichia coli H736]
 gi|307311202|ref|ZP_07590846.1| DNA gyrase, A subunit [Escherichia coli W]
 gi|312973514|ref|ZP_07787686.1| DNA gyrase, A subunit [Escherichia coli 1827-70]
 gi|331642860|ref|ZP_08343995.1| DNA gyrase, A subunit [Escherichia coli H736]
 gi|331663736|ref|ZP_08364646.1| DNA gyrase, A subunit [Escherichia coli TA143]
 gi|332278618|ref|ZP_08391031.1| DNA gyrase subunit A [Shigella sp. D9]
 gi|84028817|sp|P0AES4|GYRA_ECOLI RecName: Full=DNA gyrase subunit A
 gi|84028818|sp|P0AES5|GYRA_SHIFL RecName: Full=DNA gyrase subunit A
 gi|41634|emb|CAA29919.1| unnamed protein product [Escherichia coli]
 gi|41636|emb|CAA29676.1| unnamed protein product [Escherichia coli]
 gi|1788562|gb|AAC75291.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1799575|dbj|BAA16048.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K12 substr. W3110]
 gi|24052667|gb|AAN43827.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a
           str. 301]
 gi|30041919|gb|AAP17645.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a
           str. 2457T]
 gi|81245936|gb|ABB66644.1| DNA gyrase, subunit A [Shigella boydii Sb227]
 gi|110344031|gb|ABG70268.1| DNA gyrase subunit A [Escherichia coli 536]
 gi|157076942|gb|ABV16650.1| DNA gyrase, A subunit [Escherichia coli E24377A]
 gi|169889684|gb|ACB03391.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. DH10B]
 gi|187429263|gb|ACD08537.1| DNA gyrase, A subunit [Shigella boydii CDC 3083-94]
 gi|190903436|gb|EDV63155.1| DNA gyrase, A subunit [Escherichia coli B7A]
 gi|190909514|gb|EDV69099.1| DNA gyrase, A subunit [Escherichia coli F11]
 gi|192932056|gb|EDV84655.1| DNA gyrase, A subunit [Escherichia coli E22]
 gi|192958460|gb|EDV88899.1| DNA gyrase, A subunit [Escherichia coli E110019]
 gi|209912942|dbj|BAG78016.1| DNA gyrase subunit A [Escherichia coli SE11]
 gi|218352569|emb|CAU98348.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           55989]
 gi|218361562|emb|CAQ99153.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           IAI1]
 gi|238860817|gb|ACR62815.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           BW2952]
 gi|257754930|dbj|BAI26432.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368]
 gi|257759974|dbj|BAI31471.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009]
 gi|257765317|dbj|BAI36812.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128]
 gi|291323404|gb|EFE62832.1| A subunit [Escherichia coli B088]
 gi|299880518|gb|EFI88729.1| DNA gyrase, A subunit [Escherichia coli MS 196-1]
 gi|300307621|gb|EFJ62141.1| DNA gyrase, A subunit [Escherichia coli MS 200-1]
 gi|300414259|gb|EFJ97569.1| DNA gyrase, A subunit [Escherichia coli MS 115-1]
 gi|300524880|gb|EFK45949.1| DNA gyrase, A subunit [Escherichia coli MS 119-7]
 gi|300844869|gb|EFK72629.1| DNA gyrase, A subunit [Escherichia coli MS 78-1]
 gi|301074209|gb|EFK89015.1| DNA gyrase, A subunit [Escherichia coli MS 146-1]
 gi|306908708|gb|EFN39205.1| DNA gyrase, A subunit [Escherichia coli W]
 gi|310332109|gb|EFP99344.1| DNA gyrase, A subunit [Escherichia coli 1827-70]
 gi|313651346|gb|EFS15744.1| DNA gyrase, A subunit [Shigella flexneri 2a str. 2457T]
 gi|315061531|gb|ADT75858.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli W]
 gi|315615492|gb|EFU96124.1| DNA gyrase, A subunit [Escherichia coli 3431]
 gi|320177201|gb|EFW52210.1| DNA gyrase subunit A [Shigella dysenteriae CDC 74-1112]
 gi|320199825|gb|EFW74414.1| DNA gyrase subunit A [Escherichia coli EC4100B]
 gi|323156508|gb|EFZ42662.1| DNA gyrase, A subunit [Escherichia coli EPECa14]
 gi|323171909|gb|EFZ57553.1| DNA gyrase, A subunit [Escherichia coli LT-68]
 gi|323176842|gb|EFZ62432.1| DNA gyrase, A subunit [Escherichia coli 1180]
 gi|323184151|gb|EFZ69528.1| DNA gyrase, A subunit [Escherichia coli 1357]
 gi|323377888|gb|ADX50156.1| DNA gyrase, A subunit [Escherichia coli KO11]
 gi|323936845|gb|EGB33130.1| hypothetical protein ERCG_02100 [Escherichia coli E1520]
 gi|323941075|gb|EGB37262.1| hypothetical protein ERDG_02479 [Escherichia coli E482]
 gi|323945040|gb|EGB41105.1| hypothetical protein EREG_03495 [Escherichia coli H120]
 gi|323967672|gb|EGB63084.1| hypothetical protein ERJG_00701 [Escherichia coli M863]
 gi|324013124|gb|EGB82343.1| DNA gyrase, A subunit [Escherichia coli MS 60-1]
 gi|324117886|gb|EGC11785.1| hypothetical protein ERBG_02182 [Escherichia coli E1167]
 gi|327252499|gb|EGE64158.1| DNA gyrase, A subunit [Escherichia coli STEC_7v]
 gi|331039658|gb|EGI11878.1| DNA gyrase, A subunit [Escherichia coli H736]
 gi|331059535|gb|EGI31512.1| DNA gyrase, A subunit [Escherichia coli TA143]
 gi|332094134|gb|EGI99186.1| DNA gyrase, A subunit [Shigella boydii 3594-74]
 gi|332100970|gb|EGJ04316.1| DNA gyrase subunit A [Shigella sp. D9]
 gi|332754876|gb|EGJ85241.1| DNA gyrase, A subunit [Shigella flexneri 4343-70]
 gi|332756160|gb|EGJ86511.1| DNA gyrase, A subunit [Shigella flexneri 2747-71]
 gi|332766049|gb|EGJ96259.1| DNA gyrase, A subunit [Shigella flexneri 2930-71]
 gi|333001373|gb|EGK20941.1| DNA gyrase, A subunit [Shigella flexneri VA-6]
 gi|333002596|gb|EGK22156.1| DNA gyrase, A subunit [Shigella flexneri K-272]
 gi|333016644|gb|EGK35973.1| DNA gyrase, A subunit [Shigella flexneri K-304]
 gi|333016790|gb|EGK36117.1| DNA gyrase, A subunit [Shigella flexneri K-227]
          Length = 875

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|331647885|ref|ZP_08348977.1| DNA gyrase, A subunit [Escherichia coli M605]
 gi|281179322|dbj|BAI55652.1| DNA gyrase subunit A [Escherichia coli SE15]
 gi|331043609|gb|EGI15747.1| DNA gyrase, A subunit [Escherichia coli M605]
          Length = 875

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.7 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ S +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDL 848


>gi|90960996|ref|YP_534912.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118]
 gi|301300485|ref|ZP_07206684.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820190|gb|ABD98829.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118]
 gi|300851932|gb|EFK79617.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 850

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/762 (31%), Positives = 390/762 (51%), Gaps = 32/762 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   +K V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +
Sbjct: 4   LPNRIKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYT
Sbjct: 64  KKSARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++   +L+ +++D +DF+  Y+  + EPVV P++FPNLL NG +GIAVGM T+IP
Sbjct: 124 EARMSKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+      L+ NP+++   L+E I GPDFPTG  IV  +  I ++Y  G+G   +
Sbjct: 184 PHNLGEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGA-IVMGKSGIRKAYETGKGTVTL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E   G   IVV E+PY V K+RLIE+IAEL   K+I  + D++DES  +   V
Sbjct: 243 RAKVEIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R +   +++ +++ L+ M+T F  NM  +     P+++ L  IL+ +L H+ EV+
Sbjct: 303 TIDVRRDVSASVVLNNLYKLTLMQTTFGFNMLAIV-NGTPKILSLKQILQYYLKHQEEVI 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
            RR+ F ++    R  IL+GL IA  +ID II IIR    P      +++ + L++ Q  
Sbjct: 362 RRRTEFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQLSDKQAQ 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE  ++++E    +A     + +L   ++    I  E+ E++E F   
Sbjct: 422 AILDMRLVRLTGLERDKVENEYSKTMAAIADYEDILAKPERIDKIIYEELLEIQEKFGDE 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT    +     +   + +IE+E + V +++ G+I+                + 
Sbjct: 482 -----RRTEL--MVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLPTSDFKAQNRGGRGVQ 534

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D ++  L   T D +L  +  GK Y + A  +       +   +  L+D++ +
Sbjct: 535 GMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRTAKGIPVINLLDISAD 594

Query: 600 QDIVTAFVYDSTC-------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + I T     +          L  ++ +G       SE     + G   + +   +++  
Sbjct: 595 EKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKNGLKAITLRDGDELIN 654

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+      ++ +       + F    I  M R   GVR    +D            E   
Sbjct: 655 VLATDDSKNIIIGTHQGYAVSFDEKDIRSMGRSAAGVRGIRLRDNDYVIGSAILEPESK- 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +   Y +        +  RGG G        ++G    
Sbjct: 714 VFVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKNGPLAG 755



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 7/122 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L  N  ++ + + +   K+ V+S  G       SE     R GK      +   +   
Sbjct: 694 IRLRDNDYVIGSAILEPESKVFVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKNGP- 752

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  +  V GD  + V+ +   ++ F I  + E  R   GVRL +     I   +     E
Sbjct: 753 LAGLTTVNGDEDIMVITDKGVMIRFKISDVSETGRATLGVRLINLGADSIVSTMTKVEPE 812

Query: 708 GL 709
             
Sbjct: 813 DE 814


>gi|300926335|ref|ZP_07142135.1| DNA gyrase, A subunit [Escherichia coli MS 182-1]
 gi|300417612|gb|EFK00923.1| DNA gyrase, A subunit [Escherichia coli MS 182-1]
          Length = 875

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTTEDENVVGLQRVAEPVDEEDL 848


>gi|258544709|ref|ZP_05704943.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826]
 gi|258520046|gb|EEV88905.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826]
          Length = 888

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/794 (30%), Positives = 383/794 (48%), Gaps = 52/794 (6%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            +S+        V  V L   +   YL YA+S I  RA+PD RDG KPVHRR++ +M + 
Sbjct: 29  TMSDFAK----EVLPVRLEDEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHKQ 84

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G  +   + KSA IVG+V+GK HPHGD ++YD+LVR+AQPF  RYPL+ GQGNFG++DGD
Sbjct: 85  GNAWNKKYVKSATIVGDVMGKYHPHGDSAIYDTLVRMAQPFSLRYPLVDGQGNFGSLDGD 144

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AAYRYTEARM ++A  +L  ++++ VDF   Y+    EP V P++ PNLL NG+SGIA
Sbjct: 145 PPAAYRYTEARMAKIAHSLLTDIEKETVDFAPNYDGSQQEPTVLPTRVPNLLVNGSSGIA 204

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++P HN+ E  +A L L+D+P+     L+ Y+ GPDFPTG  ++   + I E+Y 
Sbjct: 205 VGMATNVPPHNLGETLDACLHLLDHPDADTSALMRYLPGPDFPTGA-LINGAKGIREAYE 263

Query: 245 LGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
            GRG   +RA+  +E +   G   IVV E+PYQV K+ L+ KIAEL+  K+I  +  +RD
Sbjct: 264 TGRGRIYIRAKTHIETDDSNGKQTIVVDELPYQVNKANLLGKIAELVKEKKIDGITALRD 323

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES +D   ++    R    ++++ ++F L+ ++  F +NM  L  G  P+++ L   L+ 
Sbjct: 324 ESDKDGIRMVIELRRGEVAEVILNNLFQLTQLQIVFGINMMALV-GGQPRLLSLKEALQV 382

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------- 415
           ++AHRREV+ RRS + ++    R  IL+GL IA  NIDEII +IR    P          
Sbjct: 383 FIAHRREVVTRRSIYELRKARERAHILEGLAIALANIDEIIELIRASAGPAEAKEALLAR 442

Query: 416 -----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
                                        +    + L+  Q  AIL+LRL  L  LE+ +
Sbjct: 443 GWTPGQVVDMLARAGAENSRPDGLGKQYGMRGDAYHLSPEQAQAILDLRLHRLTGLEQDK 502

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I  E   ++ E E +  +L   ++    I  E+ ++K  F+         T         
Sbjct: 503 IIQEFQEIIHEIEALLEILQVPERLLAVIKEELLDIKNQFNDVRRTQILDTHLNLSLEDL 562

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
            A   + +       +         + +      SA   K+ D ++  + A+T D +L  
Sbjct: 563 IAEEDRVITLSHEGYIKAQPLADYEAQRRGGKGKSATAVKDEDFVEQLIVANTHDTMLCF 622

Query: 567 STDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           +  GK Y L    L        G+ +  L+     + +        Y     L+  +  G
Sbjct: 623 TNRGKVYWLKVYELPQAGRNAKGKPMVNLLPFEPGERLNAVLTTRDYPEDQYLIFATKSG 682

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
                  SE       G   + +  ++++  V +  G   + +  +  K + F+ + +  
Sbjct: 683 TVKKTPLSEYSRPRSIGIIAINLREDDELVDVARTDGSRDIMLFSDAGKAVRFNENSVRS 742

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           M R   GVR  +  DG     +C    +G   +      Y +           RG  G +
Sbjct: 743 MGRDSTGVRGMNLDDGQRVIALCVVEEQGD-ILTITENGYGKRTPVADYPQKGRGTKGVI 801

Query: 740 VPKGFPRSGKFLSS 753
                 R+G+ + +
Sbjct: 802 SIACSARNGQAVCA 815



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 71/182 (39%), Gaps = 6/182 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S+ + A++ +E D L        +  I+L S  GKA      ++ S       ++ +
Sbjct: 694 RPRSIGIIAINLREDDELVDVARTDGSRDIMLFSDAGKAVRFNENSVRSMGRDSTGVRGM 753

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEK 649
            +L+  Q ++   V +    +L ++  G       ++     R  K  + +     + + 
Sbjct: 754 -NLDDGQRVIALCVVEEQGDILTITENGYGKRTPVADYPQKGRGTKGVISIACSARNGQA 812

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +  V  +  +H+ +V +N  L+   + +I    R  +GVRL    D      +   + E 
Sbjct: 813 VCAVQVLEDEHIMLVTDNGTLVRTRVAEISTSGRNTQGVRLIRTTDSEKLIAVAKIVAES 872

Query: 709 LT 710
             
Sbjct: 873 ED 874



 Score = 44.4 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 18/192 (9%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    IA  +RE  E+   +   G R                  M+  +    V  N
Sbjct: 693 SRPRSIGIIAINLREDDELVDVARTDGSR----------------DIMLFSDAGKAVRFN 736

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +RS+   S  +  ++  +G  +           IL ++ +G     P  +       
Sbjct: 737 ENSVRSMGRDSTGVRGMNLDDGQRVIALCVVEEQGDILTITENGYGKRTPVADYPQKGRG 796

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
            + +  +     N   V A        +++V+  G       +EI  + R   G   ++ 
Sbjct: 797 TKGVISIACSARNGQAVCAVQVLEDEHIMLVTDNGTLVRTRVAEISTSGRNTQGVRLIRT 856

Query: 645 SSEEKMKLVVKV 656
           +  EK+  V K+
Sbjct: 857 TDSEKLIAVAKI 868


>gi|284047397|ref|YP_003397736.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731]
 gi|283951618|gb|ADB46421.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731]
          Length = 831

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/772 (30%), Positives = 394/772 (51%), Gaps = 23/772 (2%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D  ++  T+    V  V +   +++ Y+ YA+S I +RA+PD+RDG KPVHRRI++AM+
Sbjct: 2   DDQQNDKQTISAGKVIPVYVEDEMQKCYIDYAMSVIVQRALPDVRDGLKPVHRRILYAMN 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G+    A+KKSARIVG+V+GK HPHGD SVYD++VRLAQ F  RY ++ G GNFG++D
Sbjct: 62  EAGMLPNKAYKKSARIVGDVLGKYHPHGDSSVYDAIVRLAQDFSTRYLMVDGHGNFGSVD 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTE RM ++A  +L+ +++D VDF   Y+E   EP V P+K P LL NG++G
Sbjct: 122 GDPAAAMRYTEVRMGKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPAKVPALLINGSAG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A + LID+P+ ++E+L+  + GPDFPTG  I+     I ++
Sbjct: 182 IAVGMATNIPPHNLGEVVDACVMLIDHPDATVEQLMTAVKGPDFPTGAKIL-GLSGIRQA 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG  +VRA+  VE + +    IVVTEIPYQV K++LIE IA L+  K +  + D+R
Sbjct: 241 YTTGRGVVKVRAKTHVEPMPKNKNRIVVTEIPYQVNKAKLIENIAHLVQDKTLEGITDLR 300

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      ++      + P++++  ++  + ++  F + M  L     P+++ L  IL+
Sbjct: 301 DESDRKGMRIVIELRSDVVPEIMLNKLYKHTQLQDSFGIIMLALV-NGHPRILNLKQILE 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L H+++V+ R+  + ++    R  IL+GL IA  ++DE+IA IR        K  ++ 
Sbjct: 360 YYLDHQKDVITRKCRYELKKAKERAHILEGLKIALDHLDEVIATIRASANGEVAKAALME 419

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F L++ Q  AIL++RL+ L  LE  +I+ E   ++A    ++ +L+   +       ++
Sbjct: 420 KFGLSDRQAQAILDMRLQRLTGLERQKIEDEYKEVMATIAYLEDVLSDEHKIMGIAREDL 479

Query: 480 REVKEIFSKSTDLG--------RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
            +VK+ F  +                   E       + Q  +  +        NRG   
Sbjct: 480 LDVKKRFGDARRTSIVPDTGDLETEDLIAEEDVVITISHQSYIKRQALTNFRNQNRGGRG 539

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   +   +  +GD  +  L A T D IL  +  G+ Y      +       +   
Sbjct: 540 IKAGSGKIVKEDNKVKGDFSEHLLMASTHDNILFFTNRGRVYRQKGFEIPEASRTAKGTF 599

Query: 592 --LLIDLNHNQDIVTAFVY------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              L+ L  N+ +            D    L + ++ G       SE  +  + G   + 
Sbjct: 600 IRNLLPLEENEKVNAVIAVKSGISEDEKKFLFMATNLGYVKRTSVSEFKSARKGGLIAIN 659

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           +   E++  V   +G + + +   +   + F  D +  M R   GVR  S +       +
Sbjct: 660 LGEGEELIDVKLTSGHNDILLATRDGYAIHFLEDDVRPMGRTSHGVRGISLRPHDSVVSM 719

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    +    +   +  +     +  RGG G +  K   R+G  + S
Sbjct: 720 DSCVDDTGEVLTVTDKGQGKRTDISEYRVQTRGGKGIINLKVTDRTGLIVGS 771



 Score = 84.1 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 7/172 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A++  EG+ L         + ILL + DG A      ++             I L  
Sbjct: 654 GLIAINLGEGEELIDVKLTSGHNDILLATRDGYAIHFLEDDVRPMGRTS-HGVRGISLRP 712

Query: 599 NQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVV 654
           +  +V+     D T ++L V+ KG     + SE    TR GK  + +   ++   +    
Sbjct: 713 HDSVVSMDSCVDDTGEVLTVTDKGQGKRTDISEYRVQTRGGKGIINLKVTDRTGLIVGSK 772

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +   H + ++     ++  +   I    R  +GV+L   + G     +   
Sbjct: 773 FINETHDIMLISAAGIIIRMNAADISTYGRNAQGVKLMDLEAGDKVAALAIV 824


>gi|254785508|ref|YP_003072937.1| DNA gyrase subunit alpha [Teredinibacter turnerae T7901]
 gi|237684254|gb|ACR11518.1| DNA gyrase, A subunit [Teredinibacter turnerae T7901]
          Length = 856

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/786 (30%), Positives = 396/786 (50%), Gaps = 48/786 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  VS+   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +
Sbjct: 4   IAKEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDGAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM +++  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMQKLSHDLLADLDKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+    + LI+NP  +I+ L+E I GPDFPTGG I+  R  I+ +YR GRG   V
Sbjct: 184 PHNLREVITGCIRLIENPAATIDDLIEDIPGPDFPTGG-IINGRAGILMAYRTGRGRIYV 242

Query: 253 RARWC-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA+   V +       I++ EIPYQV K+RLIEKIAEL+  K+I  + +IRDES +D   
Sbjct: 243 RAKAEVVTDEKTNRDTILIHEIPYQVNKARLIEKIAELVKDKKIEGISEIRDESDKDGLR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R    D+++ +++  + +++ F +N+  L     P+V+ L  +L+ +++HRREV
Sbjct: 303 VVIEIKRGDMGDVVLNNLYAQTQLQSVFGINIVALVDD-QPKVLNLKQMLEHFISHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------- 415
           + RR+ + ++    R  +L+GL +A  NIDE+IA+I+    P                  
Sbjct: 362 VTRRTVYLLRKARERGHVLEGLAVAIANIDEVIALIKASQTPAEAREALLARGWGTNTIS 421

Query: 416 ---------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                +   ++ L+  QV AIL LRL  L  +E  ++ +E +  
Sbjct: 422 QFLERAGADACRPDDLGAEFGMRDGQYFLSPAQVQAILELRLHRLTGMEHDKLLAEYEEK 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L +  +   +L++  +    I  E+  V   +        + +              + +
Sbjct: 482 LQQISEYLEILSNAVRLMEVIREELEAVMAEYGDERRTDIQNSQQDLTVEDLINEEDRVV 541

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
                           ++ +   +  +A   K+ D ++  L A+T D IL  +  GK + 
Sbjct: 542 TISHGGYAKTQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYILCFTNAGKVFW 601

Query: 575 LPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEES 629
           L    +     +  G  +  L+ L   + I +      +D    +++ +S+G       S
Sbjct: 602 LKVYQIPVAGRQSRGRPMVNLLPLEEGERITSILPVREFDEDRFIVMATSQGTVKKTPLS 661

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
           +       G   + +   + +       G   + ++  + K   F+ +Q+  M R  +GV
Sbjct: 662 QFARPRSVGLRAIDLVEGDHLVGTAITDGQQDIMLLSSSGKAARFAEEQVRSMGRTSRGV 721

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R     D      +     +G   +  +   Y +  +        RG  G +  +   R+
Sbjct: 722 RGIRMADEHRVIAMVI-PADGGKVLTVSENGYGKRTDVDDFPTKGRGSQGVIAMQVSERN 780

Query: 748 GKFLSS 753
           G  + +
Sbjct: 781 GGLVGA 786



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 80/219 (36%), Gaps = 10/219 (4%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             + G R T+   V   D+      ++     TV  +        +  SV L A+   EG
Sbjct: 624 PLEEGERITSILPVREFDEDRFI--VMATSQGTVKKTPLSQFARPR--SVGLRAIDLVEG 679

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L           I+LLS+ GKA    A   +   G        I +     ++   + 
Sbjct: 680 DHLVGTAITDGQQDIMLLSSSGKAARF-AEEQVRSMGRTSRGVRGIRMADEHRVIAMVIP 738

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKMKLVVKV-TGDHVAVV 664
               K+L VS  G     +  +     R   G   ++VS     +   V++  GD + ++
Sbjct: 739 ADGGKVLTVSENGYGKRTDVDDFPTKGRGSQGVIAMQVSERNGGLVGAVQIFDGDELMMI 798

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            +   L+    D++  +SR  +GVRL   ++      + 
Sbjct: 799 SDQGTLVRTRGDEVSLLSRNTQGVRLIKVRESEHIVGVA 837


>gi|227891674|ref|ZP_04009479.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741]
 gi|227866477|gb|EEJ73898.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741]
          Length = 850

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/762 (31%), Positives = 390/762 (51%), Gaps = 32/762 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   +K V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +
Sbjct: 4   LPNRIKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYT
Sbjct: 64  KKSARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++   +L+ +++D +DF+  Y+  + EPVV P++FPNLL NG +GIAVGM T+IP
Sbjct: 124 EARMSKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+      L+ NP+++   L+E I GPDFPTG  IV  +  I ++Y  G+G   +
Sbjct: 184 PHNLGEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGA-IVMGKSGIRKAYETGKGTVTL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E   G   IVV E+PY V K+RLIE+IAEL   K+I  + D++DES  +   V
Sbjct: 243 RAKVEIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R +   +++ +++ L+ M+T F  NM  +     P+++ L  IL+ +L H+ EV+
Sbjct: 303 TIDVRRDVSASVVLNNLYKLTLMQTTFGFNMLAIV-NGTPKILSLKQILQYYLKHQEEVI 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
            RR+ F ++    R  IL+GL IA  +ID II IIR    P      +++ + L++ Q  
Sbjct: 362 RRRTEFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQLSDKQAQ 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE  ++++E    +A     + +L   ++    I  E+ E++E F   
Sbjct: 422 AILDMRLVRLTGLERDKVENEYSKTMAAIADYEDILAKPERIDKIIYEELLEIQEKFGDE 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT    +     +   + +IE+E + V +++ G+I+                + 
Sbjct: 482 -----RRTEL--MVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLPTSDFKAQNRGGRGVQ 534

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D ++  L   T D +L  +  GK Y + A  +       +   +  L+D++ +
Sbjct: 535 GMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRTAKGIPVINLLDISAD 594

Query: 600 QDIVTAFVYDSTC-------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + I T     +          L  ++ +G       SE     + G   + +   +++  
Sbjct: 595 EKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKNGLKAITLRDGDELIN 654

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+      ++ +       + F    I  M R   GVR    +D            E   
Sbjct: 655 VLATDDSKNIIIGTHQGYAVSFDEKDIRSMGRSAAGVRGIRLRDNDYVIGSAILEPESK- 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +   Y +        +  RGG G        ++G    
Sbjct: 714 VFVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKNGPLAG 755



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 7/122 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L  N  ++ + + +   K+ V+S  G       SE     R GK      +   +   
Sbjct: 694 IRLRDNDYVIGSAILEPESKVFVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKNGP- 752

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  +  V GD  + V+ +   ++ F I  + E  R   GVRL +     I   +     E
Sbjct: 753 LAGLTTVNGDEDIMVITDKGVMIRFKISDVSETGRATLGVRLINLGADSIVSTMTKVEPE 812

Query: 708 GL 709
             
Sbjct: 813 DE 814


>gi|323345556|ref|ZP_08085779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis
           ATCC 33269]
 gi|323093670|gb|EFZ36248.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis
           ATCC 33269]
          Length = 864

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/772 (30%), Positives = 386/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTMDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTNDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E I+  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHIMDDLEKDTVDMANNFDDTLQEPTVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNP I  + L+EYI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLNEVIDGCCAYIDNPAIDTDGLMEYIKAPDFPTGAYIY-GLQGVRDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + EVG     IV+TEIPY V K +LIE IA+L+   ++  + +  DES
Sbjct: 240 GRGRIVIRAKAEI-EVGENHDKIVITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVIDVKREANANVILNKLFKMTALQSSFSVNCIALVK-GRPRLLALKDCVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            HR EV  RR+ F ++    R  ILKGL+IA  NIDE++ IIR        +  + +RF 
Sbjct: 358 EHRHEVTIRRTQFELKKAQERAHILKGLIIACDNIDEVVHIIRASKTPADAQKNLENRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L      +  +L   +     +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERLIAHLQQILEDPELCKKVMKDELNEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE +        RRT       A+     +     +P+ + +S+ G+I+           
Sbjct: 478 KEKYGD-----DRRTKII---PAEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSEFREQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       +E D  +    A     +L  +  G+ Y L   N+  G    +  AIQ 
Sbjct: 530 RGGVGSKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGAKDAKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L+++  +  +             + ++  ++  +  G                G   + +
Sbjct: 590 LLNIESDDSVNAILRLRGLDDEEFINSHYVVFATKNGTVKKTSLEAYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG--ISDV 700
           ++ +++  V    G + + +   N + + F    I  M R   GVR      G   +  +
Sbjct: 650 ANGDEVVDVRLTNGHNELIMANRNGRAVRFDEKTIRTMGRTATGVRGIRLDKGDDQVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I        T +  +   Y +           RGG G        ++G+ ++
Sbjct: 710 IVVNDSVQETVMVVSENGYGKRSGVEDYRKTNRGGKGVKTMNITDKTGRLVA 761



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/453 (10%), Positives = 137/453 (30%), Gaps = 28/453 (6%)

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPK--NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
            +R  +L+ +         +V   +      D    +E+ F L +++++  ++M +  + 
Sbjct: 376 QERAHILKGLIIACDNIDEVVHIIRASKTPADAQKNLENRFELDELQSKAIVDMRLSQLT 435

Query: 350 RVP--QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            +   Q+      L+  +AH +++L      +    D   E+ +                
Sbjct: 436 GLRMDQLHAEYEELERLIAHLQQILEDPELCKKVMKDELNEVKEKYGDDRRTKIIPAEHE 495

Query: 408 RNEDKPKPVMVSRFSLTENQVDA---ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
            N +   P      +++         +   R ++   +     +    +           
Sbjct: 496 FNAEDFYPNDPVVITVSHLGYIKRTPLSEFREQARGGVGSKGARHREQDFTEFIYPATMH 555

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
                         ++            GR       +   D       +   +    + 
Sbjct: 556 QTMLFFTKKGRCYWLKCYNIPEGAKDAKGRAIQNLLNIESDDSVNAILRLRGLDDEEFIN 615

Query: 525 SNRGWIRSLKSHSV-------------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           S+     +                    + A++   GD +      +  + +++ + +G+
Sbjct: 616 SHYVVFATKNGTVKKTSLEAYSRPRTNGVIAINIANGDEVVDVRLTNGHNELIMANRNGR 675

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEES 629
           A       + +       ++ +     +  +V   V + +    ++VVS  G        
Sbjct: 676 AVRFDEKTIRTMGRTATGVRGIRLDKGDDQVVGMIVVNDSVQETVMVVSENGYGKRSGVE 735

Query: 630 EIIANTRKGKTF--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG- 684
           +     R GK    + ++ +  ++  +  VT D  + ++ ++   +  ++     M R  
Sbjct: 736 DYRKTNRGGKGVKTMNITDKTGRLVAIKNVTDDNDLMIINKSGITIRLAVADCRVMGRAT 795

Query: 685 KGVRLQSY-KDGGISDVICFKICEGLTWIDSAG 716
           +GVRL +  K   +   +C  +   L       
Sbjct: 796 QGVRLINLSKKNDVIASVCKTMSSELEATVEEE 828


>gi|297582345|ref|YP_003698125.1| DNA gyrase subunit A [Bacillus selenitireducens MLS10]
 gi|297140802|gb|ADH97559.1| DNA gyrase, A subunit [Bacillus selenitireducens MLS10]
          Length = 835

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/765 (31%), Positives = 416/765 (54%), Gaps = 33/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ +   +  V  +++   +   ++ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G
Sbjct: 1   MSDQD---QSRVTEINISQEMRTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  R  L+ G GNFG++DGDS
Sbjct: 58  ITSDKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRNMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +L+ +++D +D++D Y+  + EPVV P++FPNLL NG SGIAV
Sbjct: 118 AAAMRYTEARMSKISMELLRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LAL  NPEI+IE+L+E+I GPDFPTG  IV     I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDGVLALSKNPEITIEQLMEHISGPDFPTGAEIV-GISGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   +R+   + E   G   I+V E+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 237 GKGSIMIRSNARI-EDHNGKPWIIVDELPYQVNKARLIEKIAELVRDKKIDGITDLRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R ++ ++L+ +++  + ++T F +N   L     PQV+ L   L  +L
Sbjct: 296 DRTGMRIVIELRRDVNANVLLNNLYKQTALQTSFGINTLALV-NGRPQVLNLKETLVHYL 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+R V+ RR+ F ++  + R  IL+GL +A  ++DE+IA+IR        +  ++ +F 
Sbjct: 355 DHQRVVIRRRTEFELRKAEARAHILEGLRVALDHLDEVIALIRGSQTTDIARDGLMEQFD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+ +Q  AIL++RL+ L  LE  +I++E + L+A   ++ ++L   ++    I  E+ E+
Sbjct: 415 LSHDQAQAILDMRLQRLTGLERDKIENEYNELMARIAELKAILADDEKVLEIIREELLEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F        RRTT    +  + +   + +I ++ + + +S+ G+I+          K
Sbjct: 475 RDRFGD-----DRRTTI---TFGEDSMEDEDLIPRQNVVITVSHHGYIKRIPVSTYRSQK 526

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++     ++ D +L  +  GK Y +    +   +   +   I  
Sbjct: 527 RGGRGVQGMGTHDEDFVRHLFVTNSHDHMLFFTNKGKVYRMKGYEVPEQKRTSKGIPIIN 586

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ +  ++ I T      +D+   L+ ++  G +   E        + G   +K+   ++
Sbjct: 587 LLQIEKDEYISTVIPISEFDANHSLIFMTKYGVSKRTELDAFKNIRKGGLFAIKLREGDE 646

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + V  +    + FS   +  M R   GV+    +       +     +
Sbjct: 647 LHGVRLTDGSKELVVGTKKGMSIRFSETDVRLMGRTATGVKGLRLQSEDEVVGMDIIEPD 706

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      + +           RGG G        ++G+ +S
Sbjct: 707 SD-ILIVTENGFGKRTPIDEYRQQSRGGKGIKTCNITDKNGQLVS 750



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/469 (10%), Positives = 134/469 (28%), Gaps = 25/469 (5%)

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRIPLLE 299
            + L      +R R   E     +   ++  +   +     +  +             L 
Sbjct: 351 VHYLDHQRVVIRRRTEFELRKAEARAHILEGLRVALDHLDEVIALIRGSQTTDIARDGLM 410

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +  D S +  + +L  + + L      +     +++  R      +L+       +  + 
Sbjct: 411 EQFDLSHDQAQAILDMRLQRLTGLERDKIENEYNELMARIAELKAILADDEKVLEIIREE 470

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L+       +     +       D  +   + ++I   +   I  I  +  + +     
Sbjct: 471 LLEIRDRFGDDRRTTITFGEDSMEDEDLIPRQNVVITVSHHGYIKRIPVSTYRSQKRGGR 530

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
                    +  +      +    ++ +       +   +  +        +   I   +
Sbjct: 531 GVQGMGTHDEDFVRHLF--VTNSHDHMLFFTNKGKVYRMKGYEVPEQKRTSKGIPIINLL 588

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +  K+ +              E                +   +      +    K     
Sbjct: 589 QIEKDEY------ISTVIPISEFDANHSLIFMTKYGVSKRTEL----DAFKNIRKG---G 635

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           L A+  +EGD L        +  +++ +  G +      ++         +   + L   
Sbjct: 636 LFAIKLREGDELHGVRLTDGSKELVVGTKKGMSIRFSETDVRLMGRTATGV-KGLRLQSE 694

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVK 655
            ++V   + +    +L+V+  G        E    +R GK      +   +  ++  +  
Sbjct: 695 DEVVGMDIIEPDSDILIVTENGFGKRTPIDEYRQQSRGGKGIKTCNITDKNG-QLVSLKV 753

Query: 656 VTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           V  DH + ++  N  L+   +  I + SR  +GVRL    D      + 
Sbjct: 754 VGSDHDLMMITTNGVLIRIHVSDISKTSRNTQGVRLIRLGDEEFVSTVA 802



 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 51/407 (12%), Positives = 117/407 (28%), Gaps = 25/407 (6%)

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP---KNRSLD 321
                ++    Q      ++++  L   K      ++    AE   I+           +
Sbjct: 410 MEQFDLSHDQAQAILDMRLQRLTGLERDKIENEYNELMARIAELKAILADDEKVLEIIRE 469

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
             L +   F      T      ++     +P+   +  +       R  V   RS  R  
Sbjct: 470 ELLEIRDRFGDDRRTTITFGEDSMEDEDLIPRQNVVITVSHHGYIKRIPVSTYRSQKRGG 529

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
              + +       + +L +      +        V   +      Q      + + +L +
Sbjct: 530 RGVQGMGTHDEDFVRHLFVTNSHDHMLFFTNKGKVYRMKGYEVPEQKRTSKGIPIINLLQ 589

Query: 442 LEEYQIKSE---------LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +E+ +  S            +L+   +   S         N     +  +K         
Sbjct: 590 IEKDEYISTVIPISEFDANHSLIFMTKYGVSKRTELDAFKNIRKGGLFAIKLREGDELHG 649

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
            R      E+    K  +     E +   +  +              +  L  +  D + 
Sbjct: 650 VRLTDGSKELVVGTKKGMSIRFSETDVRLMGRTAT-----------GVKGLRLQSEDEVV 698

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     IL+++ +G     P          G+ I+     + N  +V+  V  S  
Sbjct: 699 GMDIIEPDSDILIVTENGFGKRTPIDEYRQQSRGGKGIKTCNITDKNGQLVSLKVVGSDH 758

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
            L+++++ G    +  S+I   +R   G   +++  EE +  V +V 
Sbjct: 759 DLMMITTNGVLIRIHVSDISKTSRNTQGVRLIRLGDEEFVSTVARVN 805


>gi|28376980|ref|NP_783872.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1]
 gi|300769111|ref|ZP_07079000.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179197|ref|YP_003923325.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28269811|emb|CAD62708.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1]
 gi|300493351|gb|EFK28530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308044688|gb|ADN97231.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 853

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/768 (32%), Positives = 398/768 (51%), Gaps = 33/768 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S+ L    +  V+L   +   +L+YA+S I  RA+PD+RDG KPVHRRI++ MSE+G
Sbjct: 1   MADSD-LSNNRISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 60  VTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDG 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D VD++  Y++ + EP V P++FPNLL NG +GIAV
Sbjct: 120 AAAMRYTEARMSKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+  A   L+DNP+ ++  L+E + GPDFPTGG IV  +  I ++Y+ 
Sbjct: 180 GMTTNIPPHNLAEVISAIHLLMDNPDATVADLMEVLPGPDFPTGG-IVMGKSGIRKAYQT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +++   G   I+VTE+PY V K++LIE+IA L   K I  + DI DES
Sbjct: 239 GRGNIIVRAKVDIQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R     +++ +++ ++ M+T F  NM  +     P+V+ L  IL  +L
Sbjct: 299 DREGMRIVIDVRRDASASVILNNLYKMTLMQTNFGFNMLAIVK-GAPKVLSLKQILIYYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ +V+ RR+ F ++    R  IL+GL IA  +IDEIIAIIR        K  ++  + 
Sbjct: 358 EHQEDVIRRRTEFDLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLMDNYG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +I+SE  +LL        +L S  +    I  E+ E+
Sbjct: 418 LSDKQAQAILDMRLVRLTGLEREKIESEYQDLLKAIADYKEILASKDRINQIIYEELMEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +  F       +RRT    +     +   + +IE+E + V +++ G+I+           
Sbjct: 478 QRKFGD-----KRRTEL--MVGEVLSIEDEDLIEEEEVAVTLTHNGYIKRLPTTEFKSQH 530

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D +L  +  GK Y + A  +       +   +  
Sbjct: 531 RGGRGIQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAYEIPEYGRTAKGIPVIN 590

Query: 593 LIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           L+ +N  + I            S   L   + KG        E       G   + +  +
Sbjct: 591 LLGVNSGEKIQAVVNVTGDASASDNYLFFTTVKGVVKRTPVQEFANIRSNGLKAITLKDD 650

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +++  V    G  +V +   +   + F    +  M R   GVR    +D     VI F +
Sbjct: 651 DELIGVTITDGHQNVIIGTHDGYAVSFDETTVRSMGRTASGVRGIRLRDDD--FVIGFDV 708

Query: 706 -CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       + Y +        +  RGG G        ++G    
Sbjct: 709 LKPDSNVFIITEKGYGKQTPAADYPIKGRGGKGIKTANVTEKNGHLAG 756



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 6/179 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  L A+  K+ D L           +++ + DG A +     + S      +    
Sbjct: 636 NIRSNGLKAITLKDDDELIGVTITDGHQNVIIGTHDGYAVSFDETTVRSMGRTA-SGVRG 694

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           I L  +  ++   V      + +++ KG       ++     R GK     +       +
Sbjct: 695 IRLRDDDFVIGFDVLKPDSNVFIITEKGYGKQTPAADYPIKGRGGKGIKTANVTEKNGHL 754

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
             +  V G + + V+     ++ F+I  + +  R   GVRL    D G    +     E
Sbjct: 755 AGLTTVDGQEDIMVMTNQGVMIRFNIATVSQTGRATLGVRLMRLGDDGQVATMAKVDPE 813


>gi|154247807|ref|YP_001418765.1| DNA topoisomerase IV subunit A [Xanthobacter autotrophicus Py2]
 gi|154161892|gb|ABS69108.1| DNA topoisomerase IV, A subunit [Xanthobacter autotrophicus Py2]
          Length = 745

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/744 (55%), Positives = 547/744 (73%), Gaps = 2/744 (0%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           + +    + +++ V+L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI+HAM ++ L
Sbjct: 3   TRTLPPGDGHIEKVTLKEALEERYLAYALSTIMHRALPDARDGLKPVHRRILHAMRQLRL 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D G  FKKSAR+VG+VIGK HPHGDQSVYD+LVRLAQ F QRYPL+ GQGNFGN+DGD+A
Sbjct: 63  DPGQGFKKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFAQRYPLVDGQGNFGNVDGDNA 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T+ A L+L G+DEDAVDFR TY+  + EP V P+ FPNLLANG+ GIAVG
Sbjct: 123 AAMRYTEARLTETARLLLDGIDEDAVDFRPTYDGSEEEPAVLPAAFPNLLANGSQGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MATSIP HN  E+ +AAL LID+PE     LL+++ GPDFPTGG++VE    + E+Y  G
Sbjct: 183 MATSIPPHNAAELLDAALHLIDHPEAPAFDLLQFVPGPDFPTGGVLVEDPVGVAEAYATG 242

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG FRVRARW  EE GRG++ +VVTEIPY V KSRL+EKIAEL+  K++PLL D+RDESA
Sbjct: 243 RGSFRVRARWEKEETGRGTYVVVVTEIPYGVAKSRLVEKIAELLTDKKLPLLADVRDESA 302

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ED+R+VL P+ R++D ++LMES+F L+++E R PLNMNVL  G+VP+V+ L   L+EWL 
Sbjct: 303 EDIRLVLEPRARTVDAEVLMESLFKLTELEARIPLNMNVLVRGQVPKVLSLSEALREWLD 362

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           HRR+VL RRS +R++ I  R+E+L G LIAYLN+DE+I IIR ED+PK  ++  F LT+ 
Sbjct: 363 HRRDVLLRRSRYRLEQIAHRLEVLGGYLIAYLNLDEVIRIIREEDEPKQELMRTFELTDV 422

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILN+RLRSLR+LEE +I+ E D L  E++ ++ L+ S   QW  IA EIRE ++ +
Sbjct: 423 QTEAILNMRLRSLRRLEEMEIRKEHDALSKEQDGLNKLVASEAAQWKSIAKEIRETRKTY 482

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
              T +GRRRTTF       +    +A++E+EP+T+V+S +GWIR+LK H  DLS L FK
Sbjct: 483 GPETAIGRRRTTFAAPPTFHEDAFTEALVEREPVTIVVSAKGWIRALKGHVQDLSNLQFK 542

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
             DSL  A  A TT ++++ +++G+ YTL A  L  GRGHGE ++L+IDL    +IV+ F
Sbjct: 543 GDDSLGHAFFAETTSKVMVFASNGRFYTLEAAKLPGGRGHGEPVRLMIDLEQEAEIVSVF 602

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
            Y    KLL+ S +G  F+V E + +ANTRKGK  L     +    V  V GD VAV+G+
Sbjct: 603 AYQPGRKLLLASKEGRGFVVGEDDCLANTRKGKQVLVTDPPDAALAVRFVEGDWVAVIGD 662

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           NRKLL+F ++Q+PEM+RG+GVR Q Y++GG+SD+  F +  GLTW D++GR++  +E  L
Sbjct: 663 NRKLLLFPLNQVPEMTRGRGVRFQRYREGGLSDLKAFSMASGLTWEDTSGRTWTVTE--L 720

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKF 750
           L W G+R   G L PKGFPRS KF
Sbjct: 721 LEWQGERASAGRLPPKGFPRSNKF 744


>gi|171779480|ref|ZP_02920444.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282097|gb|EDT47528.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 817

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/753 (31%), Positives = 402/753 (53%), Gaps = 15/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLASEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGA-LVMGKSGIRKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +     VP+++ L  I+ +++ H++EV
Sbjct: 300 FIIEVRRDASANVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLKQIIVDYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F     ++R  IL+GLLIA  ++DE+I+IIRN +         +SRF+L+E Q 
Sbjct: 359 IVRRTEFDKAKAEKRAHILEGLLIALDHLDEVISIIRNSETDVIAQGELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E D+LL     +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLEREKIQAEYDDLLTLIADLADILAKPERVITIIKEEMDEIKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
                        +   D    +  +I       +    +   R+ +     +      +
Sbjct: 479 PRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQRRGGRGVQGTGVND 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +  +T D I  ++  G+ Y L    +       +   I  L+ L+  + + T 
Sbjct: 539 DDFVRELVSTNTHDHIYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETVQTI 598

Query: 606 FVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                  D+   L  V+ +G     +ESE     + G   L +   +++  V++  G D 
Sbjct: 599 ISEKGSDDNENYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKEGDELINVIRTNGNDD 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +  +    + F+   +  MSR   GVR  + ++G    +   +I +    +    + Y
Sbjct: 659 IIIGTKTGYSVRFNESDVRSMSRSATGVRGVNLREGDEV-IGASRITDDQEVLVITEKGY 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +           RGG G        ++G+   
Sbjct: 718 GKRTLASEYPTKGRGGKGIKTANITEKNGQLAG 750



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 12/217 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E         ++   + E     ++ +G ++  K           L AL+ KEGD L 
Sbjct: 589 LDEGETVQTIISEKGSDDNENYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKEGDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             +  +  D I++ +  G +      ++ S       ++  ++L    +++ A       
Sbjct: 649 NVIRTNGNDDIIIGTKTGYSVRFNESDVRSMSRSATGVRG-VNLREGDEVIGASRITDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE     R GK     +      ++  +V V GD  + V+ +  
Sbjct: 708 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGQLAGLVTVNGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
            ++  S+  I +  R   GV++           +   
Sbjct: 768 VMIRTSVADISQTGRATLGVKIMRLDQDAKIMTLALV 804


>gi|170732351|ref|YP_001764298.1| DNA gyrase subunit A [Burkholderia cenocepacia MC0-3]
 gi|169815593|gb|ACA90176.1| DNA gyrase, A subunit [Burkholderia cenocepacia MC0-3]
          Length = 851

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/782 (31%), Positives = 376/782 (48%), Gaps = 56/782 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NPE +I++L+E I  PDFPT G I+     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLGNPEATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLSHRREVLTRRTIYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------------------ 414
            R  +L+GL +A  NIDE IAII+    P                               
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAESENAAA 418

Query: 415 ----------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  VK  F  +             +          +    
Sbjct: 479 ADLLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ K       A   KE D ++    A+T D IL  S  G+ Y +   
Sbjct: 539 AGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVY 598

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G  I  +  L   + I        + +   + + +S G            
Sbjct: 599 EVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFIFMATSLGTVKKTPLEAFSR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +KG   + +   + +       G   V +  +  K + F  + +  M R  +GVR   
Sbjct: 659 PMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQ 718

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +DG     +     E  T + +    Y +           RG  G +  +   R+GK +
Sbjct: 719 LEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVV 778

Query: 752 SS 753
           ++
Sbjct: 779 AA 780



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 662 KGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLED 721

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 722 GQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 781

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + ++ EM R  +GV L S  +G
Sbjct: 782 LVDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEG 824


>gi|332678777|gb|AEE87906.1| DNA gyrase subunit A [Francisella cf. novicida Fx1]
          Length = 868

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/781 (31%), Positives = 395/781 (50%), Gaps = 48/781 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +ALIDNP ++IE+L+EYI  PDFPTG  I    + I+E+Y+ GRG   +RA+  +
Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYIN-GTDGILEAYKTGRGRVIMRAKADI 248

Query: 259 EEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            E    G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR+EV+ RR+ 
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHRKEVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           F ++    R  IL+GLL++  NIDE+I +I+    P     S                  
Sbjct: 368 FELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGV 427

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                ++LTE Q DAIL LRL  L  LE+ +I +E   L+   +
Sbjct: 428 DVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIK 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            + S+L+   +    +  E+ E+++ +          +          A     +     
Sbjct: 488 YLISILSDINELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMD 547

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             V         + K   V  SA   KE DS+   + A T D +L  S+ G+ Y     +
Sbjct: 548 GYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYD 607

Query: 580 LLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIAN 634
                   +   I  ++ L  ++ I        ++    + + +  G    V+ SE    
Sbjct: 608 FPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
              GK  + ++  +++  V    GD  + +  +  K + F    +  M R   GV     
Sbjct: 668 RSTGKIAIGLNDGDELSYVALTDGDKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGMRL 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +     +    + +    Y +          KR   G +      R+GK + 
Sbjct: 728 HHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVV 787

Query: 753 S 753
           +
Sbjct: 788 A 788



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 7/181 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S    A+   +GD L          +I++ S  GKA      ++ +      A    
Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGDKQIMMFSDAGKAIRFDESDVRAMGRSA-AGVTG 724

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVV-SSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEK 649
           + L+HNQ IV+  V +    +++  +  G       SE     R   G   +  S    K
Sbjct: 725 MRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGK 784

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           + + V V  D  + ++ +N  L+  S D++ E  R  +GVRL + ++      +     +
Sbjct: 785 VVVAVLVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQD 844

Query: 708 G 708
            
Sbjct: 845 D 845



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G             +   + +  +     N  +V A + ++   +++++  G     
Sbjct: 750 TENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVMITDNGTLVRT 809

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
              E+    R   G   + + + EK+  +  V  D V
Sbjct: 810 SSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDV 846


>gi|254555175|ref|YP_003061592.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1]
 gi|254044102|gb|ACT60895.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1]
          Length = 853

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/768 (32%), Positives = 398/768 (51%), Gaps = 33/768 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S+ L    +  V+L   +   +L+YA+S I  RA+PD+RDG KPVHRRI++ MSE+G
Sbjct: 1   MADSD-LSNNRISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 60  VTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDG 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D VD++  Y++ + EP V P++FPNLL NG +GIAV
Sbjct: 120 AAAMRYTEARMSKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+  A   L+DNP+ ++  L+E + GPDFPTGG IV  +  I ++Y+ 
Sbjct: 180 GMTTNIPPHNLAEVISAIHLLMDNPDATVADLMEVLPGPDFPTGG-IVMGKSGIRKAYQT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +++   G   I+VTE+PY V K++LIE+IA L   K I  + DI DES
Sbjct: 239 GRGNIIVRAKVDIQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R     +++ +++ ++ M+T F  NM  +     P+V+ L  IL  +L
Sbjct: 299 DREGMRIVIDVRRDASASVILNNLYKMTLMQTNFGFNMLAIVK-GAPKVLSLKQILIYYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ +V+ RR+ F ++    R  IL+GL IA  +IDEIIAIIR        K  ++  + 
Sbjct: 358 EHQEDVIRRRTEFDLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLMDNYG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +I+SE  +LL        +L S  +    I  E+ E+
Sbjct: 418 LSDKQAQAILDMRLVRLTGLEREKIESEYQDLLKAIADYKEILASKDRINQIIYEELMEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +  F       +RRT    +     +   + +IE+E + V +++ G+I+           
Sbjct: 478 QRKFGD-----KRRTEL--MVGEVLSIEDEDLIEEEEVAVTLTHNGYIKRLPTTEFKSQH 530

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D +L  +  GK Y + A  +       +   +  
Sbjct: 531 RGGRGIQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAYEIPEYGRTAKGIPVIN 590

Query: 593 LIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           L+ +N  + I            S   L   + KG        E       G   + +  +
Sbjct: 591 LLGVNSGEKIQAVVNVTGDASASDNYLFFTTVKGVVKRTPVQEFANIRSNGLKAITLKDD 650

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +++  V    G  ++ +   +   + F    +  M R   GVR    +D     VI F +
Sbjct: 651 DELIGVTITDGHQNIIIGTHDGYAVSFDETTVRSMGRTASGVRGIRLRDDD--FVIGFDV 708

Query: 706 -CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       + Y +        +  RGG G        ++G    
Sbjct: 709 LKPDSNVFIITEKGYGKQTPAADYPIKGRGGKGIKTANVTEKNGHLAG 756



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 6/179 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  L A+  K+ D L           I++ + DG A +     + S      +    
Sbjct: 636 NIRSNGLKAITLKDDDELIGVTITDGHQNIIIGTHDGYAVSFDETTVRSMGRTA-SGVRG 694

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           I L  +  ++   V      + +++ KG       ++     R GK     +       +
Sbjct: 695 IRLRDDDFVIGFDVLKPDSNVFIITEKGYGKQTPAADYPIKGRGGKGIKTANVTEKNGHL 754

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
             +  V G + + V+     ++ F+I  + +  R   GVRL    D G    +     E
Sbjct: 755 AGLTTVDGQEDIMVMTNQGVMIRFNIATVSQTGRATLGVRLMRLGDDGQVATMAKVDPE 813


>gi|189345659|ref|YP_001942188.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245]
 gi|189339806|gb|ACD89209.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245]
          Length = 828

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 398/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E +  +S+   + + YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G  
Sbjct: 1   MQRERILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARIVGEV+GK HPHGD +VYDSLVRL Q F  RYPLI GQGNFG++DGDS AA RY
Sbjct: 61  HKKSARIVGEVLGKFHPHGDSAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +L+ +D++ VDF   +++   EP V PS  PNLL NG+SGIAVGMAT+I
Sbjct: 121 TEVRMKPIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P  N++E+ +  +A+I+NPEI I  +++++I PDFPTGG I+   E + ++Y  GRG   
Sbjct: 181 PPQNLREVVDGIIAVIENPEIEIADIMKHVIAPDFPTGG-IIYGYEGVRQAYLTGRGKVV 239

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  VE     G   I+VTE+PYQV K RLIEKI EL+  K++  + DIRDES  D  
Sbjct: 240 IRARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLDGIADIRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  + M+  F + M  L    VP+V+ L  ++  ++ HR E
Sbjct: 300 RLVIELKRDAVAKVVLNNLYKHTPMQETFGVIMLALVD-GVPRVLNLKEMMHYYVKHRNE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           ++ RR+ F + A ++R  IL+GL I   N+DE+I  IR        +  ++ RF L+E Q
Sbjct: 359 IVLRRTQFDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDTSTAQERLMERFGLSEIQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RL+ L  +E  +I +E    L   + + S+L S ++Q   I  E+ +V+E++ 
Sbjct: 419 SKAILEMRLQRLTGMERKKIDTEYQETLLLIDGLRSILASPQKQMQIIREELLKVREVYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVD 539
                  RRT              + MI +E + + I++ G+I+                
Sbjct: 479 DE-----RRTEIVPQEGD---FSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           ++    K  D ++    A T + IL  +  G+ Y L    +        G ++  +++L 
Sbjct: 531 VTGAQAKHDDFIEHMFIASTHNYILFFTNTGRCYWLKVYEIPEAGRAARGRSLANIMELR 590

Query: 598 HNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I   +    ++    +++ ++ G        +     R G   + +   +++    
Sbjct: 591 PTEQIKAYINIRNFEDPGYIVMATTNGIVKKTPLDDFSNPRRTGIAAITIEEGDELLDAR 650

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
              GDH + +   +   + F  ++I  M R   GV+  +  +G     +          +
Sbjct: 651 LTDGDHQIILAKSSAYAVRFPENEIRSMGRTAMGVKGITLDEGEKCISMVTTKRTDTALL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +        L +RG  G +  K   + G  + 
Sbjct: 711 AVTDNGFGKRSRVEDYRLTRRGARGVITLKAHEKIGALVG 750



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 65/223 (29%), Gaps = 7/223 (3%)

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           R T   +     +       I       ++               ++A+  +EGD L  A
Sbjct: 590 RPTEQIKAYINIRNFEDPGYIVMATTNGIVKKTPLDDFSNPRRTGIAAITIEEGDELLDA 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCK 613
                  +I+L  +   A   P   + S       +   I L+  +  ++      +   
Sbjct: 650 RLTDGDHQIILAKSSAYAVRFPENEIRSMGRTAMGV-KGITLDEGEKCISMVTTKRTDTA 708

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRK 669
           LL V+  G        +     R  +  + + + EK    + L+     D + ++  N  
Sbjct: 709 LLAVTDNGFGKRSRVEDYRLTRRGARGVITLKAHEKIGALVGLIDVNDDDDLIIITTNGI 768

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           +    +  +    R   GVRL     G     +          
Sbjct: 769 VNRQHVSDVRMTGRNTSGVRLIRLMAGDKISALARVPKSDEEV 811


>gi|300897701|ref|ZP_07116099.1| DNA gyrase, A subunit [Escherichia coli MS 198-1]
 gi|300358579|gb|EFJ74449.1| DNA gyrase, A subunit [Escherichia coli MS 198-1]
          Length = 875

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGEGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|296159970|ref|ZP_06842790.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1]
 gi|295889716|gb|EFG69514.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1]
          Length = 866

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/782 (30%), Positives = 379/782 (48%), Gaps = 56/782 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NPE +I++L+E +  PDFPT G I+     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLKNPEATIDELIEIVPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  +L  +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------------------ 414
            R  +L+GL +A  NIDE IAII+    P                               
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLARAETENASA 418

Query: 415 ----------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E   ++A+ 
Sbjct: 419 GGREAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  +K  F  +             +       +  +    
Sbjct: 479 ADLLDILARPERITAIIVEELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V         + K       A   KE D +     A+T D IL  S  G+ Y++   
Sbjct: 539 AGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILCFSNRGRVYSVKVY 598

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G  I  +  L   + I        + +   + + ++ G            
Sbjct: 599 EVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFSADKFVFMGTALGTVKKTPLEAFGR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             RKG   + +   + +       G H V +  ++ K + F  + +  M R  +GVR   
Sbjct: 659 VLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQ 718

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +DG     +     E  + + +    + +    +      RG  G +  +   R+GK +
Sbjct: 719 LEDGQNVIALLVAGDEQQSVLTATENGFGKRTPIIEYTRHGRGTKGMIAIQTSERNGKVV 778

Query: 752 SS 753
           ++
Sbjct: 779 AA 780



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 662 KGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 721

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
               I      D    +L  +  G        E   + R  KG   ++ S    K+    
Sbjct: 722 GQNVIALLVAGDEQQSVLTATENGFGKRTPIIEYTRHGRGTKGMIAIQTSERNGKVVAAT 781

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V  +  + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 782 LVDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEG 824


>gi|238915982|ref|YP_002929499.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
 gi|238871342|gb|ACR71052.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
          Length = 839

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/769 (31%), Positives = 402/769 (52%), Gaps = 36/769 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  + + V+ V ++  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+     
Sbjct: 2   DEHIFDKVQEVDMQKTMENYYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              +K ARIVG+ +GK HPHGD S+Y++LV+LAQ F  RYPL+ G GNFG++DGD AAA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++++  + + +++D VDF   ++E + EP V PS++PNLL NGTSGIAVGMAT
Sbjct: 122 RYTEARLSKISMEMTRDLNKDTVDFIPNFDETEKEPTVLPSRYPNLLCNGTSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           +IP HN++E+  A + +IDN      + +IE++L+ + GPDFPTGG I+  +  I E+YR
Sbjct: 182 NIPPHNLREVIGAVVKMIDNKVEEDRDTTIEEILDIVKGPDFPTGGTII-GKLGIEEAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GR   +VRA   +E +  G   IVVTE+PY V K++LIEKIAEL+  K+I  + D+RDE
Sbjct: 241 TGRAKIKVRAVTNIEPMNNGKNRIVVTELPYMVNKAKLIEKIAELVRDKKIDGITDLRDE 300

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   +     R ++P++++  ++  + ++  F + M  L     P+V+ L  +LK +
Sbjct: 301 SDREGMRIAIELRRDVNPNIVLNQLYKHTQLQDTFGVIMLALVD-NQPKVLNLYDMLKYY 359

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRF 421
           L H+ EV+ RR+ F +   + R  IL+GL+IA  NID +I+IIR     +     +++ F
Sbjct: 360 LLHQEEVVTRRTKFDLNKAEERAHILEGLMIALDNIDRVISIIRGSANVQIAKESLIAEF 419

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +L+E Q  AI+++RLR+L  LE  ++++EL  L  + ++  ++L   K     I  EI E
Sbjct: 420 ALSEAQAQAIVDMRLRALTGLERSKLEAELKELHEKIKEYKAILADKKLLLGVIKNEISE 479

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------- 533
           + + +        RRT+       +     + +I  EP  +  +N G+++ +        
Sbjct: 480 IADKYGD-----DRRTSI---GYDEYDISMEDLIPDEPCVIARTNLGYVKRMTPDNFKSQ 531

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQ 591
                 +  +   + D +K      +   +   +  G+AY L A  +        G AI 
Sbjct: 532 HRGGKGIKGMQTIDDDYIKDLFMTTSHHVLTFFTNTGRAYKLKAYEIPEASRTSRGTAII 591

Query: 592 LLIDLNHNQDIVTAFVYD-----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
            L+ L   + I             T  L + + KG        E     + G   + +  
Sbjct: 592 NLLQLAPGETITAVVPVKIDTLQDTDYLFMATKKGIVKKTPVKEFANIRKTGIQAINLRE 651

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           ++++  V        + +V    + + F    +    R   GV   S  D      +   
Sbjct: 652 DDELIEVKLTDDQAEILMVTMLGQCIRFKETDVRPTGRSAMGVIGMSLMDEDEVVGVQVS 711

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +G T +  +     +  +     +  RGG G    K   ++G  + +
Sbjct: 712 -TQGDTMLIVSENGMGKRTDIDEYTVQHRGGKGVKCYKITEKTGNVVGA 759



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 8/170 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            + A++ +E D L           IL+++  G+       ++         +  +  L  
Sbjct: 643 GIQAINLREDDELIEVKLTDDQAEILMVTMLGQCIRFKETDVRPTGRSAMGVIGM-SLMD 701

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVV 654
             ++V   V      +L+VS  G     +  E     R GK      +   +   +    
Sbjct: 702 EDEVVGVQVSTQGDTMLIVSENGMGKRTDIDEYTVQHRGGKGVKCYKITEKTGN-VVGAK 760

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            V     V ++     ++      I  + R   GV+L +  +G     I 
Sbjct: 761 AVDDSREVMLITTEGIIIRLQCSDISNLGRITSGVKLINLDEGIKVATIA 810



 Score = 41.7 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 49/124 (39%), Gaps = 2/124 (1%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
             ++ +  +   + D +     +   D +L++S +G                G+ ++   
Sbjct: 689 RSAMGVIGMSLMDEDEVVGVQVSTQGDTMLIVSENGMGKRTDIDEYTVQHRGGKGVKCYK 748

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKL 652
                 ++V A   D + ++++++++G    ++ S+I    R   G   + +    K+  
Sbjct: 749 ITEKTGNVVGAKAVDDSREVMLITTEGIIIRLQCSDISNLGRITSGVKLINLDEGIKVAT 808

Query: 653 VVKV 656
           + KV
Sbjct: 809 IAKV 812


>gi|255021281|ref|ZP_05293330.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756]
 gi|254969292|gb|EET26805.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756]
          Length = 847

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/772 (31%), Positives = 384/772 (49%), Gaps = 39/772 (5%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             VSL   + + YL YA+S I  RA+PD RDG KPVHRR+++AM EMG D+   +KKSAR
Sbjct: 9   IPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHEMGNDWNKPYKKSAR 68

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG++DGDS AA RYTE RM 
Sbjct: 69  VVGDVIGKYHPHGDVAVYDTIVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEVRMA 128

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  +L  ++ + VDF   Y+E++ EP V P++ PNLL NG++GIAVGMAT+IP HN+ 
Sbjct: 129 RIAHEMLADIERETVDFGPNYDEKEVEPQVLPARIPNLLINGSAGIAVGMATNIPPHNLT 188

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           EI  A +AL+D+ ++   +L   + GPDFPT GI++   E  +E+YR GRG   +RAR  
Sbjct: 189 EILNACIALVDDDDLPDSELFRLVPGPDFPTAGILL-GNEGAIEAYRSGRGRVVMRARAE 247

Query: 258 VE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           +E +   G   I V+E+PYQV K++LIE+IAE++  KR+  + D+RDES +    +    
Sbjct: 248 IETDAKSGRQTIAVSELPYQVNKAKLIERIAEMVKEKRLDGISDLRDESDKSGMRIAIEL 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++ +++  + +++ F +NM  L     PQ + L   LK +L HRREV+ RRS
Sbjct: 308 KRDANAEVVLNNLYQHTALQSVFNINMVALLD-GAPQTLGLRDALKAFLRHRREVVTRRS 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---------------- 420
            F ++    R  IL+GL +A +N+D +IA+IR    P                       
Sbjct: 367 IFDLKKARDRAHILEGLAVALVNLDPLIALIRAAASPAEAKAQMLARVWEPGLVAALLAE 426

Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                       + L+E Q  AIL+LRL  L  LE+ +I+ E   LL    ++  +L S 
Sbjct: 427 RGEPSAGLQADGYHLSEAQAQAILDLRLHRLTGLEQDKIREEYLGLLERIRELLEILGSD 486

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  E+  +++ +  +        T    +    A     +       +      
Sbjct: 487 ARLMAVIRAELVAIRDQYGDARRSEIVADTGVIANEDLIAEENMVVTFTHAGYIKAQPVT 546

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGH 586
              + +       A   KE D ++    A T   +L  S  GK +      L        
Sbjct: 547 TFNAQRRGGRGKVATTTKEEDFVERMFCASTHATVLFFSNLGKVFWQKVYQLPQSGRSAR 606

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ I  L+ L  ++ I T      +     + +V++ G        E      +G   + 
Sbjct: 607 GKPIVNLLSLAPSEGITTVLPVREFQEGQYVCMVTAHGVVKKTPLMEYSRPRSQGINAIN 666

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   +++  V    G     +       + F  D++  M R  +GVR  S          
Sbjct: 667 LDPGDRLVAVCLSDGQREFMLFTRKGMAVRFPEDKVRPMGRTARGVRGISLDADDRVISA 726

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +    + +  + Y +  N        RGG G +  +   R+G+ + +
Sbjct: 727 QIVDPD-QVILTATAKGYGKLTNVEEYRRTNRGGKGVIAIQTNARNGQVVGA 777



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 71/202 (35%), Gaps = 9/202 (4%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +      V  +        +S    ++A++   GD L     +      +L +  G A 
Sbjct: 638 CMVTAHGVVKKTPLMEYSRPRSQ--GINAINLDPGDRLVAVCLSDGQREFMLFTRKGMAV 695

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
             P   +         ++  I L+ +  +++A + D    +L  ++KG   +    E   
Sbjct: 696 RFPEDKVRPMGRTARGVRG-ISLDADDRVISAQIVDPDQVILTATAKGYGKLTNVEEYRR 754

Query: 634 NTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
             R GK  + + +  +   +   + V   D + +V     L+  ++  I    R  +GVR
Sbjct: 755 TNRGGKGVIAIQTNARNGQVVGALAVKESDELMLVSNGGTLIRIAVQGIRRTGRNAQGVR 814

Query: 689 LQSY-KDGGISDVICFKICEGL 709
           L     D  ++ +      +  
Sbjct: 815 LIQLAPDEQLAGLALIADAQEE 836


>gi|333030660|ref|ZP_08458721.1| DNA gyrase, A subunit [Bacteroides coprosuis DSM 18011]
 gi|332741257|gb|EGJ71739.1| DNA gyrase, A subunit [Bacteroides coprosuis DSM 18011]
          Length = 859

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/757 (29%), Positives = 391/757 (51%), Gaps = 21/757 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD++DGFKPVHRRI++ M E+G      +K
Sbjct: 4   QDRIIKINIEDEMKSSYIDYSMSVIVSRALPDVKDGFKPVHRRILYGMMELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYLAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++ E ++Q + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++P 
Sbjct: 124 ARLNKMGEEMMQDLYKETVDFDPNFDNTLQEPKVLPARIPNLLVNGASGIAVGMATNMPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A  A ++N EI +E L++Y+  PDFPTGG  +     + E++  GRG   +R
Sbjct: 184 HNLSEVIDACQAYLENTEIDVEGLMQYVKAPDFPTGG-FIYGMSGVKEAFETGRGRVVMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  + E G+    IV++EIPY V K+ LI+ IA+L+  KRI  + ++ DES      ++
Sbjct: 243 ARAEI-EAGQTHEKIVISEIPYNVNKADLIKHIADLVNEKRIEGIANVNDESDRSGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++  ++ ++ +++ F +N   L     P  + L  ++  ++ HR +V+ 
Sbjct: 302 VDCKRDANANVVLNKLYKMTALQSSFGVNNVALVD-GRPHTLNLRDLVANFVEHRHDVVI 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL+IA  NIDE+I IIR    P      +++RF L+E Q  A
Sbjct: 361 RRTQFDLRKAEERAHILEGLIIASDNIDEVIKIIRAAKNPNEAITNLMTRFELSEIQARA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RLR L  L + Q+  E   ++A   +   +LN+ ++    I  E++EVK+ +    
Sbjct: 421 IVEMRLRQLTGLMQDQLHGEYQEVMARIAEYKEILNNDEKCREVIKAELQEVKDKYGDER 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                 ++         +     +       +  +      S     V       ++ D 
Sbjct: 481 RSEIVYSSEEFNPEDFYSNDPMIITISHMGYIKRTPLSDFTSQNRGGVGSKGTDTRDQDF 540

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY 608
           ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ N  +      
Sbjct: 541 IEHIYPATMHNTMMFFTQMGKCYWLKVYEIPEGSKNSKGRAIQNLLNIDRNDAVNAYLRV 600

Query: 609 DS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
           +         +  ++  +  G        +     + G   + +  ++K+  V    G  
Sbjct: 601 EDLNDEEFINSHYVIFCTKHGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRLTNGKC 660

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWIDSA 715
           ++ +  +N + + F  + +  M R   GVR     + G   +  ++  +  E  T +  +
Sbjct: 661 NIVIANKNGRAIRFHEENVRPMGRTATGVRGIRLDEDGQDEVVGMVAIRDLETETIMVVS 720

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +        +  RGG G        ++GK + 
Sbjct: 721 EEGYGKRSEVEDYRITNRGGKGVKTMNITEKTGKLVG 757


>gi|281420205|ref|ZP_06251204.1| DNA gyrase, A subunit [Prevotella copri DSM 18205]
 gi|281405700|gb|EFB36380.1| DNA gyrase, A subunit [Prevotella copri DSM 18205]
          Length = 878

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/772 (29%), Positives = 389/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTMDHDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY LI GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYTLIDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E I+  +D++ VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHIMDDLDKETVDMTNNFDDTLQEPTVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNP+I  + L++YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNMPTHNLGEVIDGCCAYIDNPDIDTDGLMQYIPAPDFPTGATIY-GIQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA   + E       IV+TEIPY V K +L+  IA+L    R+  + ++ DES
Sbjct: 240 GRGRIVVRATAEI-ESSENHDKIVITEIPYGVNKEQLVMAIADLAKEGRVDGIANVNDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++L+  +F L+ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVLLNKLFKLTALQSSFSVNCIALV-NGRPRLLSLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  IL+GL+IA  NIDE++ IIR    P     +   RF 
Sbjct: 358 EHRHDVTIRRTQFELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSDAQRNLEKRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L+   + ++ +LN  +     +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRLEQLHNEFNELMKTIDYLNQILNDPELCKKVMKDELNEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE +  +     RRT        D     +     +P+ + +S+ G+I+           
Sbjct: 478 KEKYGDA-----RRTMI---KPDDHEFNPEDFYPNDPVVITVSHLGYIKRTPLSEFREQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       ++ D  +    A     +L  +  G+ Y L    +  G  + +  AIQ 
Sbjct: 530 RGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L+++  +  +             + +   ++  +  G                G   + +
Sbjct: 590 LLNIESDDQVNAFLRLRGLNDAEFINNHYVVFATKNGTVKKTCLEAYSRPRANGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG--ISDV 700
              +++  V    G + + +   N + + F  ++I  M R   GVR     +G   +  +
Sbjct: 650 VEGDEVVDVRLTNGHNELIIANRNGRAVRFDENEIRTMGRTSTGVRGMRLDEGDDAVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I     E  T +  + + Y +  + L   + KRGG G        ++G+ ++
Sbjct: 710 IVVNDPEKETVMVVSEQGYGKRSDVLDYRVTKRGGKGVKTLNITDKTGRLVA 761



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/541 (12%), Positives = 164/541 (30%), Gaps = 23/541 (4%)

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A + L    +++  +    +       G   + S +  V+ +   R    +R R   E
Sbjct: 313 ANANVLLNKLFKLTALQSSFSVNCIALVNGRPRLLSLKECVKYFVEHRHDVTIR-RTQFE 371

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                    ++  +         I+++  +I A + P   D +    +   +        
Sbjct: 372 LKKAQERAHILEGLIIAC---DNIDEVVHIIRASKTP--SDAQRNLEKRFELDELQSKAI 426

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +D  L   +   L  +   F   M  +       +   +   K       EV  +    R
Sbjct: 427 VDMRLSQLTGLRLEQLHNEFNELMKTIDYLNQ-ILNDPELCKKVMKDELNEVKEKYGDAR 485

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
              I               +   I        K  P+   R              R +  
Sbjct: 486 RTMIKPDDHEFNPEDFYPNDPVVITVSHLGYIKRTPLSEFREQARGGVGSKGARTRDKDF 545

Query: 440 RKLEEYQIKSELDNLLAEKEKIDS--LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            +        +      +K +          +   N     I+ +  I S        R 
Sbjct: 546 TEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKGRAIQNLLNIESDDQVNAFLRL 605

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                + A+       +   +  TV  +        +++   + A++  EGD +      
Sbjct: 606 RGL--NDAEFINNHYVVFATKNGTVKKTCLEAYSRPRAN--GVIAINIVEGDEVVDVRLT 661

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LL 615
           +  + +++ + +G+A       + +       ++ +     +  +V   V +   K  ++
Sbjct: 662 NGHNELIIANRNGRAVRFDENEIRTMGRTSTGVRGMRLDEGDDAVVGMIVVNDPEKETVM 721

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLL 671
           VVS +G     +  +     R GK    ++  +   ++  +  VT D  + ++ ++  ++
Sbjct: 722 VVSEQGYGKRSDVLDYRVTKRGGKGVKTLNITDKTGRLVAIKNVTDDNDLMIINQSGIVI 781

Query: 672 IFSIDQIPEMSRG-KGVRLQSY-KDGGISDVIC--FKICEGLTWIDSAGRSYNRSENDLL 727
             ++     M R  +GVRL +  K   +   +C         +  + +  ++ +   ++ 
Sbjct: 782 RLAVADCRVMGRATQGVRLINLAKKNDVIASVCKVMSSELEASVEEESRSAWAKKSEEIE 841

Query: 728 G 728
            
Sbjct: 842 N 842


>gi|94499388|ref|ZP_01305925.1| DNA gyrase subunit A [Oceanobacter sp. RED65]
 gi|94428142|gb|EAT13115.1| DNA gyrase subunit A [Oceanobacter sp. RED65]
          Length = 868

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/794 (32%), Positives = 410/794 (51%), Gaps = 64/794 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ Y+ YA+S I  RA+PD+RDG KPVHRR++HAM+ +  D+   +
Sbjct: 4   LSKEILPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNILNNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYTLVDGQGNFGSIDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +D++ V+F D Y+  +  P V P++ P+LL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMAKIAHEMLADIDKETVNFVDNYDGTEQIPEVLPTRIPSLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LALI+NPEI ++ L++YI GPDFPT   ++  R+ IV++YR GRG  ++
Sbjct: 184 PHNLTEVITGCLALIENPEIDVDGLMQYITGPDFPTAA-LINGRDGIVDAYRTGRGRIQM 242

Query: 253 RARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR     +   G   I+ TEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D   
Sbjct: 243 RARHHFEMDDKNGKESIIFTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKDGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R   P++++ ++F  + ++T F +N   L     P+++ L  +L+ ++ HRREV
Sbjct: 303 IVVELRRGEVPEVVLNNLFAQTQLQTVFGINTVALVD-GQPKILNLKDMLEAFVRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------- 415
           + RR+ + ++    R  IL+GL +A  NID +IA I+                       
Sbjct: 362 VTRRTIYDLRKARERGHILEGLAVALANIDPVIATIKASPTAAEAKDKLISTAWQPGDVM 421

Query: 416 ---------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+  Q  AIL++RL+ L  LE  ++  E    
Sbjct: 422 EMLERAGPDACRPDDLDPQFGFRDGNYYLSPAQAQAILDMRLQKLTGLEHDKLIDEYKVK 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           + E  +   +L S ++    I  E+  +K+ +        R T   E     +    + +
Sbjct: 482 VDEIAEYLQILASHERLMEVIREELESIKDEYGD-----GRLTEIVE---TRRHLTMEDL 533

Query: 515 IEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLL 566
           I +E + V +S+ G+ +                 SA   K+ D ++  L A+T D IL  
Sbjct: 534 IAEEDMVVTLSHGGYAKIQPVTDYQAQRRGGRGKSASAIKDEDFIEHLLVANTHDTILCF 593

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           S  GK Y L   ++   S +  G  I  L+ L  ++ I T      Y     + + +SKG
Sbjct: 594 SNAGKVYWLKVYDIPVASRQSRGRPIVNLLPLEQDEWITTILPVREYTEGHYIFMATSKG 653

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
                + +        G   L++   + +       G+  V ++ +  K + F+   +  
Sbjct: 654 TVKKTDLTAFSRPRSSGLIALELEEGDTLMGAEITDGNQDVLLMSDVGKAVRFAESNVRA 713

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           M R  +GVR    +D     V      EG T + ++   Y +  +        RG  G +
Sbjct: 714 MGRTARGVRGIKMQDDQKV-VSLMIPKEGATVLTASEHGYGKRTDVDEFPTKGRGTQGVI 772

Query: 740 VPKGFPRSGKFLSS 753
                 R+GK + +
Sbjct: 773 GMVTNDRNGKLVGA 786



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 74/203 (36%), Gaps = 7/203 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +         +  S  L AL  +EGD+L  A        +LL+S  GKA    A + + 
Sbjct: 654 TVKKTDLTAFSRPRSSGLIALELEEGDTLMGAEITDGNQDVLLMSDVGKAVRF-AESNVR 712

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             G        I +  +Q +V+  +      +L  S  G     +  E     R  +  +
Sbjct: 713 AMGRTARGVRGIKMQDDQKVVSLMIPKEGATVLTASEHGYGKRTDVDEFPTKGRGTQGVI 772

Query: 643 KVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG- 696
            + + ++   +   V+V  G+ + ++     L+   + ++  + R  +GV L   ++G  
Sbjct: 773 GMVTNDRNGKLVGAVQVFDGNEIMLITNQGTLVRTRVSEVSTLGRNTQGVTLIRVQEGER 832

Query: 697 ISDVICFKICEGLTWIDSAGRSY 719
           +  +      +         ++ 
Sbjct: 833 LVGIAPIMDEDEDMDSVVNEQTL 855


>gi|300213944|gb|ADJ78360.1| DNA gyrase subunit A [Lactobacillus salivarius CECT 5713]
          Length = 850

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/762 (31%), Positives = 389/762 (51%), Gaps = 32/762 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   +K V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +
Sbjct: 4   LPNRIKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYT
Sbjct: 64  KKSARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++   +L+ +++D +DF+  Y+  + EPVV P++FPNLL NG +GIAVGM T+IP
Sbjct: 124 EARMSKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+      L+ NP+++   L+E I GPDFPTG  IV  +  I ++Y  G+G   +
Sbjct: 184 PHNLGEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGA-IVMGKSGIRKAYETGKGTVTL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E   G   IVV E+PY V K+RLIE+IAEL   K+I  + D++DES  +   V
Sbjct: 243 RAKVEIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R +   +++ +++ L+ M+T F  NM  +     P+++ L  IL+ +L H+ EV+
Sbjct: 303 TIDVRRDVSASVVLNNLYKLTLMQTTFGFNMLAIV-NGTPKILSLKQILQYYLKHQEEVI 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
            RR+ F ++    R  IL+GL IA  +ID II IIR    P      +++ + L++ Q  
Sbjct: 362 RRRTEFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQLSDKQAQ 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE  ++++E    +      + +L   ++    I  E+ E++E F   
Sbjct: 422 AILDMRLVRLTGLERDKVENEYSKTMVAIADYEDILAKPERIDKIIYEELLEIQEKFGDE 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT    +     +   + +IE+E + V +++ G+I+                + 
Sbjct: 482 -----RRTEL--MVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLPTSDFKAQNRGGRGVQ 534

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D ++  L   T D +L  +  GK Y + A  +       +   +  L+D++ +
Sbjct: 535 GMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRTAKGIPVINLLDISAD 594

Query: 600 QDIVTAFVYDSTC-------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + I T     +          L  ++ +G       SE     + G   + +   +++  
Sbjct: 595 EKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKNGLKAITLRDGDELIN 654

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+      ++ +       + F    I  M R   GVR    +D            E   
Sbjct: 655 VLATDDSKNIIIGTHQGYAVSFDEKDIRSMGRSAAGVRGIRLRDNDYVIGSAILEPESK- 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +   Y +        +  RGG G        ++G    
Sbjct: 714 VFVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKNGPLAG 755



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L  N  ++ + + +   K+ V+S  G       SE     R GK      +   +   
Sbjct: 694 IRLRDNDYVIGSAILEPESKVFVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKNGP- 752

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  +  V GD  + V+ +   ++ F+I  + E  R   GVRL +     I   +     E
Sbjct: 753 LAGLTTVNGDEDIMVITDKGVMIRFNISDVSETGRATLGVRLINLGADSIVSTMTKVEPE 812

Query: 708 GL 709
             
Sbjct: 813 DE 814


>gi|332534567|ref|ZP_08410402.1| DNA gyrase subunit A [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035987|gb|EGI72466.1| DNA gyrase subunit A [Pseudoalteromonas haloplanktis ANT/505]
          Length = 899

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/814 (30%), Positives = 388/814 (47%), Gaps = 74/814 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDLANEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +++  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKMSHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI NP+++I +L++YI GPDFPT   I+  ++ I ++Y  GRG  
Sbjct: 182 IPPHNLTEVVNGCLALIQNPDLTILELMDYIPGPDFPTAA-IINGKKGIEQAYLTGRGKV 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D 
Sbjct: 241 YMRARADIETDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++ +++  + ++T F +NM  L     P+   L  +L+E++ HRR
Sbjct: 301 MRIVIEIKRGDVGEVILNNLYSQTQLQTVFGMNMVALI-NNQPKCFNLKEMLEEFIIHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------- 415
           EV+ RR+ F ++    R   L+GL IA  NID II +IR    P                
Sbjct: 360 EVVTRRTVFDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKIALTARPWELGN 419

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ ++E Q  AIL+LRL  L  LE  +I +E 
Sbjct: 420 VQGMLEKAGEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             LL    ++  +L + ++    I  E+ E+KE +                         
Sbjct: 480 QALLELIAELLYILATPERLMEVIRDELVEIKEQYGDERRTEINAAAHDISLEDLITEEN 539

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   K+ D ++  L A+T D IL  ST G+
Sbjct: 540 VVVTLSHEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGR 599

Query: 572 AYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L   S    G+ I  L+ L  ++ I        Y     + + ++ G     
Sbjct: 600 LYWLKVYQLPLASRAARGKPIVNLLPLEADERITAILPVREYAEDKYIFMATAFGTVKKT 659

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ-------- 677
             +        G   + ++  + +  V    G + + +  +  K++ F   +        
Sbjct: 660 PLTAYSRQRASGIIAVNLNDGDSLIGVDITDGSNEIMLFTDAGKVVRFKEAEETTVVDEN 719

Query: 678 -----------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
                            +  M R   GVR     D      +     +G   +      Y
Sbjct: 720 GNPVLDEEGNPEIRFKGVRPMGRTATGVRGIKMADDQRVVSLIVPKTDGA-ILTVTENGY 778

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           R   G +  K   R+G  + +
Sbjct: 779 GKRTQLEDYPSKSRATQGVVSIKVSERNGAVVGA 812


>gi|268318567|ref|YP_003292223.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785]
 gi|262396942|emb|CAX65956.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785]
          Length = 829

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 391/765 (51%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGG IV  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVIRGIHMLMDNPDVTTKDLIKVIPGPDFPTGG-IVMGRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVVTE+PY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +     P  + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIV-NGAPHFLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII IIR           ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E   L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQELQAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           ++ F        RRT   E      +   + +IE++ + + +++ G+I+ + +       
Sbjct: 479 QKRFGD-----DRRTKIAE--GEAVSIEDEDLIEQKDVLLTLTHNGYIKRMPADEFKVQN 531

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +  ++ D +   + + T D +L  +  GK Y+  A  +     + +   I  
Sbjct: 532 RGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++L+  + I              L  V+  G     + SE     R G   L +   ++
Sbjct: 592 LLELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDE 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+   +  M R   GVR  + +D     V    +  
Sbjct: 652 LNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSMGRTAAGVRGINLRDNDYV-VGSDILEP 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G        ++G    
Sbjct: 711 DSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAG 755



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 68/190 (35%), Gaps = 8/190 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               L AL  ++GD L   L       IL+ +  G A T    ++ S
Sbjct: 624 TVKRTKVSEFQNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRS 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                 A    I+L  N  +V + + +   ++LV+S KG       SE     R GK   
Sbjct: 684 MGRTA-AGVRGINLRDNDYVVGSDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIK 742

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  V  V GD  + ++     ++ F +D + +  R   GVRL    DG 
Sbjct: 743 TANITEKNGP-LAGVTVVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGA 801

Query: 697 ISDVICFKIC 706
               I     
Sbjct: 802 QVASITAVPK 811


>gi|323161692|gb|EFZ47575.1| DNA gyrase, A subunit [Escherichia coli E128010]
          Length = 875

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDSIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|288800089|ref|ZP_06405548.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333337|gb|EFC71816.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039]
          Length = 858

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/766 (29%), Positives = 392/766 (51%), Gaps = 36/766 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M ++G      
Sbjct: 2   IDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMRDIGNTSSNP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VGEV+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 62  YKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++  +D+D VD    ++E   EP V P+K PNLL NG +GIAVGMAT++
Sbjct: 122 TECRLEKIGEYVMDDLDKDTVDMVPNFDETLLEPTVMPTKIPNLLVNGGNGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +   A IDN EI+ E+L++YI  PDFPTGG I    + + ++Y  GRG   
Sbjct: 182 PTHNLSEVIDGCCAYIDNEEINTEELMQYIQAPDFPTGGYIY-GLQGVKDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E       I++TEIPY V K +LIE IA+L+   ++  + +  DES      
Sbjct: 241 MRAKAEI-ESDENQDKIIITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDESGRQGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + ++L+  +F ++ +++ F +N   L     P+++ L   +K ++ HR +V
Sbjct: 300 IVIDVKRDANANVLLNKLFKMTALQSSFSVNNIALVK-GRPRLLTLKDCIKYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
             RR+ F ++  + R  IL+G++IA  NIDE++ II+    P   +  +  RF+L E Q 
Sbjct: 359 TIRRTKFELKKAEERAHILEGMIIASDNIDEVVQIIKASRTPALARTNLEQRFNLDELQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+++RL  +  L+  ++ ++ D L      + S+L         +  E+ E+KE F  
Sbjct: 419 QAIVDMRLSQITGLKVEELHAQFDELQQRIAYLTSILTDDNLCKKVMKDELNELKEKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDL 540
                 RRT       A+     +     +P+ + +S+ G+I+              V  
Sbjct: 479 E-----RRTKII---PAEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSEFREQARGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
             +  +E D  +    A     +L  +  G+ Y L   N+  G    +  AIQ L++++ 
Sbjct: 531 KGVRHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTKDSKGRAIQNLLNIDP 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  ++  +  G                G   + ++  +++
Sbjct: 591 DDGLNAILRLRGLDDEEFVNSHNVVFATKNGTIKKTSLEAYSRPRANGVIAINIAEGDEV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKIC 706
             V    G + + +  +N + + F+ + +  M R   GVR       D  +  +I     
Sbjct: 651 VDVRLTNGKNEIIMANKNGRAVRFNEETVRAMGRTATGVRGMKLDGDDDQVVGMIVVNDA 710

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E    +  +   Y +  +     +  RGG G        ++G+ ++
Sbjct: 711 EAENVMVVSETGYGKRSSVEDYRVTNRGGKGVKTLNITEKTGRVVA 756



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 51/454 (11%), Positives = 133/454 (29%), Gaps = 28/454 (6%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP----DLLMESIFMLSDMETRFP 340
           K       +R  +LE +   S     +V   K          +L           +    
Sbjct: 364 KFELKKAEERAHILEGMIIASDNIDEVVQIIKASRTPALARTNLEQRFNLDELQSQAIVD 423

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           + ++ ++  +V ++      L++ +A+   +L   +  +    D   E+ +         
Sbjct: 424 MRLSQITGLKVEELHAQFDELQQRIAYLTSILTDDNLCKKVMKDELNELKEKFGDERRTK 483

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDA---ILNLRLRSLRKLEEYQIKSELDNLLAE 457
                   N +   P      +++         +   R ++   +    ++    +    
Sbjct: 484 IIPAEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSEFREQARGGVGSKGVRHREQDFTEF 543

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                                ++            GR       +   D       +   
Sbjct: 544 IYPATMHQTMLFFTKKGRCYWLKCYNIPEGTKDSKGRAIQNLLNIDPDDGLNAILRLRGL 603

Query: 518 EPITVVISNRGWIRSLKSHSV-------------DLSALHFKEGDSLKIALHAHTTDRIL 564
           +    V S+     +                    + A++  EGD +      +  + I+
Sbjct: 604 DDEEFVNSHNVVFATKNGTIKKTSLEAYSRPRANGVIAINIAEGDEVVDVRLTNGKNEII 663

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGN 622
           + + +G+A       + +       ++ +     +  +V   V +      ++VVS  G 
Sbjct: 664 MANKNGRAVRFNEETVRAMGRTATGVRGMKLDGDDDQVVGMIVVNDAEAENVMVVSETGY 723

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQI 678
                  +     R GK    ++  EK   VV +      + + ++ ++   +  ++ ++
Sbjct: 724 GKRSSVEDYRVTNRGGKGVKTLNITEKTGRVVAIKNVNDDNDLMIINKSGITIRLAVSEV 783

Query: 679 PEMSRG-KGVRLQSY-KDGGISDVICFKICEGLT 710
             M R  +GVRL +  K   +   +C  +   L 
Sbjct: 784 RVMGRATQGVRLINLSKKNDVIASVCKVMSSELE 817


>gi|189461351|ref|ZP_03010136.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136]
 gi|189431880|gb|EDV00865.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136]
          Length = 845

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/765 (30%), Positives = 401/765 (52%), Gaps = 37/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   +++ Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +K
Sbjct: 4   QDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++ E ++Q + ++ VDF + +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +A IDN +I ++ L+ YI  PDFPTGG I      + ++Y  GRG   +R
Sbjct: 184 HNLSEVIDACVAYIDNNDIDVDGLMHYIKAPDFPTGGYIY-GISGVRDAYETGRGRVVMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       I+V EIPY V K  LIE IA L+  K+I  +  + DES  +   ++
Sbjct: 243 AKTEI-ESHPTHDKIIVNEIPYNVNKKELIENIAALVNDKKIEGISYVNDESDREGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +  +++  +F ++ ++T F +N   L     P+++ L  +++ ++ HR EV+ 
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVH-GRPKLLNLKDLIRLFVEHRHEVVI 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF LTE Q  A
Sbjct: 361 RRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMDRFQLTEVQSRA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RLR L  L + Q+ +E + L+ +    + +L + +     I  E+ EVKE +    
Sbjct: 421 IVEMRLRQLTGLLQDQLHAEYEELMKQIAYFEEILTNEELCKKVIKDELIEVKEKYGD-- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
              +RR+       A +    +     + + + IS+ G+I+              V    
Sbjct: 479 ---QRRSEIV---YASEEFNPEDFYADDEMVITISHLGYIKRTPLSEFRAQHRGGVGSKG 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
              ++ D ++    A   + ++  +  GK Y L    +  G    +  AIQ L++++ + 
Sbjct: 533 SETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGNKTSKGRAIQNLLNIDSDD 592

Query: 601 DIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +             + ++  +L  +  G        +     + G   + +  ++++  
Sbjct: 593 VVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIE 652

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICE 707
           V    G + + +   N + + F    + EM R   GVR  +  + G   +  +IC K  +
Sbjct: 653 VRMTNGNNEIVIANRNGRAIRFHESAVREMGRTATGVRGITLDEDGTDEVIGMICIKNPQ 712

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             T +  +   Y +  +        RGG G        ++GK ++
Sbjct: 713 EETIMVISENGYGKRSDIEDYRKTNRGGKGVKTLSITEKTGKLVA 757


>gi|167586524|ref|ZP_02378912.1| DNA gyrase subunit A [Burkholderia ubonensis Bu]
          Length = 851

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/782 (30%), Positives = 378/782 (48%), Gaps = 56/782 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NPE +I++L+E I  PDFPT G I+     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLHNPEATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  IL+ +LAHRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLAHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------------------ 414
            R  +L+GL +A  NIDE IAII+    P                               
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAETENATA 418

Query: 415 ----------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRDAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L+  ++    I  E+  VK  F  +             +          +    
Sbjct: 479 ADLLDILSRPERITVMIGEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ K       A   KE D ++    A+T D +L  S  G+ Y +   
Sbjct: 539 SGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYWVKVY 598

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G  I  +  L   + I        + +   + + +S G            
Sbjct: 599 EVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMATSLGTVKKTPLEAFSR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +KG   + +   + +       G   V +  +  K + F  + +  M R  +GVR   
Sbjct: 659 PMKKGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQ 718

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +DG     +     E  + + +    Y +           RG  G +  +   R+GK +
Sbjct: 719 LEDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVV 778

Query: 752 SS 753
           ++
Sbjct: 779 AA 780



 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 662 KGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLED 721

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 722 GQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAT 781

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 782 LVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 824


>gi|309702541|emb|CBJ01868.1| DNA gyrase subunit A [Escherichia coli ETEC H10407]
          Length = 875

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQ+ K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQINKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|205371905|ref|ZP_03224725.1| DNA gyrase subunit A [Bacillus coahuilensis m4-4]
          Length = 805

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/745 (33%), Positives = 409/745 (54%), Gaps = 28/745 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK
Sbjct: 1   MKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGITSDKAYKKSARIVGEVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD+AAA RYTEARM++++  +++
Sbjct: 61  YHPHGDSAVYESMVRMAQNFNFRYMLVDGHGNFGSVDGDAAAAMRYTEARMSKISMELIR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +D++D Y+ ++ EP V P++FPNLL NG SGIAVGMAT+IP H + EI +  LA
Sbjct: 121 DINKDTIDYKDNYDGQEREPAVLPARFPNLLVNGASGIAVGMATNIPPHQLGEIIDGLLA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  N +I+I +L+E+I GPDFPT G ++  R  I  +Y  G+G   +RA+  +E+   G 
Sbjct: 181 LSKNRDITIPELMEFIHGPDFPTAG-LIVGRSGIRRAYETGKGSIMMRAKVEIEQKSNGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V EIPYQV K++LIEKIA+L+  K+I  + D+RDES  +   ++    R  + +++
Sbjct: 240 ETIIVNEIPYQVNKAKLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIEIRRDANANVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L     P+V+ L   L  +L H++ V+ RR+ + ++  + 
Sbjct: 300 LNNLYKQTALQTSFGINMLALVD-GQPKVLNLKQALDYYLDHQQIVIRRRTEYELRKAEA 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  +IDEIIA+IR           ++++F+L+E Q  AIL++RL+ L  L
Sbjct: 359 RAHILEGLRIALDHIDEIIALIRGSQTTDIAKEGLMTQFNLSEKQAQAILDMRLQRLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+ E  NL A   ++  +L   ++    I  E+ E+K+ F+       RRT     
Sbjct: 419 EREKIEEEYKNLQALIAELRGILADEEKVLEIIREELLEIKDRFND-----VRRTEIV-- 471

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIA 554
           +   +    + +I +E I + +++ G+I+          K     +  +   + D ++  
Sbjct: 472 AGGIENIEDEDLIPRENIVITLTHNGYIKRLPASTYRSQKRGGRGVQGMGTNDDDFVEHL 531

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF---VYD 609
           L+  T D IL  +  GKAY      +       +   I  L+ +  ++ I T      +D
Sbjct: 532 LYTSTHDTILFFTNKGKAYRAKGYEIPEFNRTAKGIPIINLLGIEKDEWINTMIRIEEFD 591

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               L   + KG +     S+       G   + +  ++++  V    GD  + +  +N 
Sbjct: 592 EESYLFFTTQKGISKRTPVSDFANIRTNGLIAINLREDDELISVKLTDGDKQILIGTKNG 651

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            L+ F    +  M R   GV+  +  +      +   I E    +      + +      
Sbjct: 652 LLIRFDEKDVRSMGRTATGVKGITLVNDDEVVSMEI-IEEDDHVLVITKHGFGKRTPASE 710

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
             L  RGG G        ++G  ++
Sbjct: 711 YRLQSRGGKGLKTCNITDKNGPLVA 735



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 78/219 (35%), Gaps = 12/219 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E        ++    ++E      + +G  +              L A++ +E D L  
Sbjct: 575 IEKDEWINTMIRIEEFDEESYLFFTTQKGISKRTPVSDFANIRTNGLIAINLREDDELIS 634

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                   +IL+ + +G        ++ S       +   I L ++ ++V+  + +    
Sbjct: 635 VKLTDGDKQILIGTKNGLLIRFDEKDVRSMGRTATGV-KGITLVNDDEVVSMEIIEEDDH 693

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRK 669
           +LV++  G       SE    +R GK     +  +K   +  V  VTG+  + ++  +  
Sbjct: 694 VLVITKHGFGKRTPASEYRLQSRGGKGLKTCNITDKNGPLVAVKSVTGEEDLMLITVHGV 753

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           L+   I  I    R  +GV+L S ++            E
Sbjct: 754 LIRMDIHAISITGRNTQGVKLISLREEEYVATAAKVAKE 792


>gi|332344011|gb|AEE57345.1| DNA gyrase, A subunit GyrA [Escherichia coli UMNK88]
          Length = 875

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAHGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|299135097|ref|ZP_07028288.1| DNA topoisomerase IV, A subunit [Afipia sp. 1NLS2]
 gi|298590074|gb|EFI50278.1| DNA topoisomerase IV, A subunit [Afipia sp. 1NLS2]
          Length = 751

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/740 (55%), Positives = 547/740 (73%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               ++++ V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD  +
Sbjct: 7   PPEPQDIQEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPSS 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSA+IVG+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGN+DGD+ AA R
Sbjct: 67  PFKKSAKIVGDVMGGFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNVDGDNPAAMR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+T VA L+L+G+DEDAV+FR TY+  D EPVV P  FPNLLANG  GIAVGMATS
Sbjct: 127 YTESRLTDVARLLLEGLDEDAVEFRPTYDGSDKEPVVLPGGFPNLLANGAQGIAVGMATS 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+C+AAL LID P      LL Y+ GPDFPTGGI+V+S++SI E+Y  GRGGF
Sbjct: 187 IPPHNAAELCDAALHLIDKPATKTRGLLRYVKGPDFPTGGIVVDSQDSIAEAYATGRGGF 246

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RVRA+W  E+  RG+W IVVTEIP+ VQKSRLIE+IAEL+  K++ L+ DIRDESAED+R
Sbjct: 247 RVRAKWHQEDGARGTWNIVVTEIPWLVQKSRLIERIAELLNEKKLHLVGDIRDESAEDIR 306

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+ PK++++DP++LME++F  +D+E+R PLN+NVL  GR+P+V+ L   L+EWL H R+
Sbjct: 307 IVIEPKSKNVDPEVLMETLFKQTDLESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRD 366

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RRS+ R   I+ R+E+L G LIAYLN+D++I IIR ED+PKPV++  F LT+ Q D+
Sbjct: 367 VLVRRSNHRKSQIEHRLEVLGGYLIAYLNLDKVIKIIRTEDEPKPVLIKTFKLTDIQADS 426

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ILN+RLR+LRKLEE +I+ E   L AE + + ++L S  +QW ++  ++++V+E+F   T
Sbjct: 427 ILNMRLRNLRKLEEMEIRGEDKKLRAELKDLKAVLASQDEQWKKVGEQVKKVRELFGPKT 486

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            LG+RRT F +    D A +++A+IE+EPITVV+S++GW+R+LK H  DLS L FK  D 
Sbjct: 487 ALGKRRTQFADAPEHDLAAIEEALIEREPITVVVSDKGWVRTLKGHVEDLSNLTFKTDDR 546

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L I+  A TT ++LLL T G+ YTL A  L  GRGHG+ I+  IDL  + +IV+ FV   
Sbjct: 547 LGISFFAETTSKLLLLGTHGRFYTLDAQKLPGGRGHGDPIRSFIDLEGDANIVSLFVNTG 606

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
             K L+ S  G  F+V E + + NTRKGK  L V++  +   +  V GD VAV+GENRK+
Sbjct: 607 GRKFLIASHDGQGFVVNEDDCVGNTRKGKQVLNVTAPNEAAAICTVAGDTVAVIGENRKM 666

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           LIF +DQ+PEM+RG+GVRLQ YKDGG+SD+  F   EGLTW DSAGR ++ +  +L  W 
Sbjct: 667 LIFPLDQVPEMARGRGVRLQRYKDGGLSDITTFTAKEGLTWKDSAGREFSATWKELSDWR 726

Query: 731 GKRGGVGSLVPKGFPRSGKF 750
           G R   G L PKGFP+S KF
Sbjct: 727 GNRADAGRLPPKGFPKSNKF 746


>gi|228477604|ref|ZP_04062237.1| DNA gyrase, A subunit [Streptococcus salivarius SK126]
 gi|228250748|gb|EEK09946.1| DNA gyrase, A subunit [Streptococcus salivarius SK126]
          Length = 822

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/754 (32%), Positives = 395/754 (52%), Gaps = 16/754 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGG-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +    VP+++ L  IL +++AH++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEK-GVPKILSLRQILADYIAHQQEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA   +DE+I IIRN           ++RF LTE Q 
Sbjct: 359 VVRRTQFDKDKAEARAHILEGLLIALDYLDEVITIIRNSQTDAEAQADLMARFELTERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E ++LLA    +  +L   ++    I  E+ E K  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILEKPERVIAIIKEELDESKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
           +            +   D    +  +I       +    +   RS K     +      +
Sbjct: 479 ARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRGVQGTGVND 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +  ++  G+ Y L    +       +   I  L+ L+  + I T 
Sbjct: 539 DDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETIQTV 598

Query: 606 FVYD-----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                        L+ V+ +G     +E+E     + G   LK+   +++  V   TG +
Sbjct: 599 INAKSDEASENNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTTGNE 658

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +  +    + F  D I  MSR   GV+  + +DG    V    I E    +    + 
Sbjct: 659 EIVIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGDQV-VGAAAITEDQEVLIITEKG 717

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +        RGG G        ++G    
Sbjct: 718 YGKRTSATEYPTKGRGGKGIKTANITEKNGNLAG 751



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 72/223 (32%), Gaps = 8/223 (3%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           D G    T       + +     +       V  +     ++++ +   L AL  +EGD 
Sbjct: 590 DEGETIQTVINAKSDEASENNHLVFVTRQGLVKRTKEAEFKNIRQN--GLIALKLREGDE 647

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L         + I++ +  G +       + S      A    + L     +V A     
Sbjct: 648 LINVFLTTGNEEIVIGTKFGYSVRFKEDTIRSMSRMA-AGVKGVTLRDGDQVVGAAAITE 706

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGE 666
             ++L+++ KG       +E     R GK      +   +     +V     + + V+ +
Sbjct: 707 DQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITEKNGNLAGIVTVSGDEDIMVITD 766

Query: 667 NRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
              ++  ++  I +  R  +GV++    D            E 
Sbjct: 767 TGVIIRTAVANISQTGRATQGVKVMRLDDSARIVTFALVEPEE 809


>gi|312897368|ref|ZP_07756792.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359]
 gi|310621429|gb|EFQ04965.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359]
          Length = 821

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/754 (31%), Positives = 384/754 (50%), Gaps = 14/754 (1%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +    + V  V L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+   
Sbjct: 2   DEQQFDKVLPVCLEHEMQNSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVGEV+GK HPHGD SVYD+ VRLAQ F  RYPL+ G GNFG++DGDSAAA 
Sbjct: 62  KPYKKSARIVGEVLGKYHPHGDSSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM ++   +L  +D++ VDF   Y+    EP V P+K PNLL NG++GIAVGMAT
Sbjct: 122 RYTEVRMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPAKIPNLLVNGSAGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  + +ID+P++++++L+  I GPDFPTG  I+  RE I+++Y  GRG 
Sbjct: 182 NIPPHNLGEVIDGLVMMIDDPDVTLDQLMTKIQGPDFPTGAKIL-GREGILKAYSTGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++R+   +E + +G   IV+TEIPYQV K+R+IE IA+L   K I  +  +RDES    
Sbjct: 241 VKMRSCAEIEPMSKGKNRIVITEIPYQVNKARVIESIADLSRNKDIDGITALRDESDRKG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++      ++PD+++  ++  + ++  F + M  L     P+V+ L  +L  +L HR+
Sbjct: 301 MRIVIELRADVNPDIILNKLYKHTQLQETFGVIMLALVD-GHPRVLTLREVLAYYLEHRK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR  F +     R  IL+GLLIA  +IDE+I  IR        K  ++S+F L+E 
Sbjct: 360 VVVTRRCRFELDKALARAHILEGLLIALDHIDEVIKTIRESATDEIAKNALMSKFDLSEK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E   L    + + S+L    +    I  E+ E K+ +
Sbjct: 420 QSIAILDMRLRRLTGLERDKIQEEYAELEKTIDYLRSVLADEHKLMGIIRDELLETKKKY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +          T            +  +       +   N     +       +  +  K
Sbjct: 480 ADKRRTQIEADTSELNVEDLIPNERMVLTLTRRGYIKRINANVYHTQNKGGRGIKGMATK 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---GRGHGEAIQLLIDLNHNQDIV 603
           + D++   L+    + +L  +  G+ Y L +  +         G A   L+ L+  + + 
Sbjct: 540 DEDAVNHLLYTSAHNTVLFFTNFGRVYRLKSYEIPEANSRNSKGIAAINLLPLSQGEKVN 599

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                   D    L + + +G        E     R G   + +   + +  V    GD 
Sbjct: 600 ALIDVDQVDPQANLFMATERGLVKKTSLQEFSNVRRNGLIAISLMDGDHLAKVRMTKGDQ 659

Query: 661 -VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +  +    + F    +  M R  +GVR  +  +  +  +    + +    +  +   
Sbjct: 660 NIILATKQGMAICFKETDVRPMGRNTRGVRGITLAEDDMV-IGADILADDSQVLTVSEEG 718

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + +  N     + +RGG G    K  P++G  + 
Sbjct: 719 FGKRNNVDAYKVQRRGGKGVKNFKITPKTGVIVG 752



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 60/178 (33%), Gaps = 7/178 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A+   +GD L           I+L +  G A      ++     +   ++  I L  
Sbjct: 637 GLIAISLMDGDHLAKVRMTKGDQNIILATKQGMAICFKETDVRPMGRNTRGVRG-ITLAE 695

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVV 654
           +  ++ A +     ++L VS +G              R GK      +   +   + + V
Sbjct: 696 DDMVIGADILADDSQVLTVSEEGFGKRNNVDAYKVQRRGGKGVKNFKITPKTGVIVGVEV 755

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
                 + ++  N  ++   I+ I     R   GV++Q  ++      +     EG  
Sbjct: 756 VRNTQELILITSNGIVIRTDIESIGVKKGRNTSGVKIQRLEENDKVAALDTISVEGSD 813



 Score = 37.4 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 54/175 (30%), Gaps = 11/175 (6%)

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RR               +  M + +   ++ + +G     K   V     + +    + +
Sbjct: 634 RRNGLIAISLMDGDHLAKVRMTKGDQNIILATKQGMAICFKETDVRPMGRNTRGVRGITL 693

Query: 554 ALHAH--------TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           A               ++L +S +G             R  G+ ++          IV  
Sbjct: 694 AEDDMVIGADILADDSQVLTVSEEGFGKRNNVDAYKVQRRGGKGVKNFKITPKTGVIVGV 753

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEI---IANTRKGKTFLKVSSEEKMKLVVKVT 657
            V  +T +L++++S G     +   I         G    ++   +K+  +  ++
Sbjct: 754 EVVRNTQELILITSNGIVIRTDIESIGVKKGRNTSGVKIQRLEENDKVAALDTIS 808


>gi|282879557|ref|ZP_06288288.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1]
 gi|281306505|gb|EFA98534.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1]
          Length = 872

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/772 (30%), Positives = 387/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTVDHDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++ E I+  +D+D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLAKMGEHIMDDLDKDTVDMANNFDDTLVEPTVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN++E+ +   A IDNP+I +E+L++YI  PDFPTGG I    + + ++Y  
Sbjct: 181 GMATNMPTHNLREVIDGCCAYIDNPDIELEELMQYIQAPDFPTGGYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E       IVVTEIPY V K +LIE IA L+   ++  + +  DES
Sbjct: 240 GRGRIILRAKAEI-ESDESHDKIVVTEIPYGVNKQQLIEYIANLVKEGKLDGIANANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVIDVKRDANANVILNKLFKMTALQSSFSVNNIALV-NGRPRLLSLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  ILKGL+IA  NIDE++ IIR    P     +   RF 
Sbjct: 358 EHRHDVTIRRTKFELKKAQDRAHILKGLIIACDNIDEVVHIIRGSKTPAEAQTNLEKRFD 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E D L      ++++L+  +     +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRLEQLHAEFDELEKLIAYLENILSDPELCKKVMKDELNEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE +        RRT              +     +P+ + +S+ G+I+           
Sbjct: 478 KEKYGD-----DRRTKIIPDEHE---FNAEDFYPNDPVVITVSHLGYIKRTPLSDFREQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       +  D  +    A     +L  +  G+ Y L   N+  G    +  AIQ 
Sbjct: 530 RGGVGSKGATHRNADFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTKDSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L+++  +  I             + ++  ++  +  G                G   + +
Sbjct: 590 LLNIESDDAINAILRLRGLDDEEFINSHYVVFATKNGTVKKTCLEAYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  +++  V    G+  + +   N + + F    I  M R   GVR     DG  + +  
Sbjct: 650 AEGDEVVDVRLTNGENELIMANRNGRAVRFDERTIRVMGRTATGVRGMRLDDGDDAVIGM 709

Query: 703 FKICE--GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + +    T +  +   Y +  +        RGG G        ++G+ ++
Sbjct: 710 IVVDDPINETVMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSITDKTGRLVA 761



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 93/296 (31%), Gaps = 15/296 (5%)

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++       +             +            K  ++    K    +    +  +
Sbjct: 534 GSKGATHRNADFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTKDSKGRAIQNLLNI 593

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           +   + +  L  R     E   +            +   +   +       +  +  + A
Sbjct: 594 ESDDAINAILRLRGLDDEEFINSHYVVFATKNGTVKKTCLEAYS-------RPRTNGVIA 646

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           ++  EGD +      +  + +++ + +G+A       +         ++ +   + +  +
Sbjct: 647 INIAEGDEVVDVRLTNGENELIMANRNGRAVRFDERTIRVMGRTATGVRGMRLDDGDDAV 706

Query: 603 VTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT 657
           +   V D      ++VVS  G        +     R GK    +S  +   ++  +  VT
Sbjct: 707 IGMIVVDDPINETVMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSITDKTGRLVAIKNVT 766

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY-KDGGISDVICFKICEGLT 710
            D  + ++ ++   +  S+ +   M R  +GVRL +  K   I   +C  +   L 
Sbjct: 767 DDNDLMIINKSGITIRLSVAECRVMGRATQGVRLINLSKKNDIIASVCRTMSSELE 822


>gi|71898266|ref|ZP_00680440.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|71732005|gb|EAO34062.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
          Length = 893

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/819 (31%), Positives = 394/819 (48%), Gaps = 80/819 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     ++
Sbjct: 4   TAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARI+GEV+GK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGD AAA RYT
Sbjct: 64  FKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM++++  ++  +D++ VDF+  Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP
Sbjct: 124 ESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALIDNPE+ I+ L+EYI GPDFPT G I+     IV  YR GRG  R+
Sbjct: 184 PHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAG-IINGTAGIVAGYRTGRGRVRM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E    G   IVVTEIPYQV K+RLIEKIAEL+  KRI  + ++RDES +D   +
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME+ F +NM  L     PQ++ L  IL+ ++ HRREV+
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTHMESVFGINMVALVD-GRPQLLNLKQILQAFIRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P+                  
Sbjct: 362 TRRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGT 421

Query: 420 ------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + LTE QV  IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
                +  +L S       I  E+ +++E +        R +          A     + 
Sbjct: 482 EIIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ K      +A+  KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               L        G  I   I L   + +        Y     +   + +G       SE
Sbjct: 602 SVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATRQGTVKKTPLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    G+  V +   N K + FS + +  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMGRTATGVR 721

Query: 689 LQSYKDGGISDVICFKI----------------------------------CEGLTWIDS 714
                +G     +                                       + L  + +
Sbjct: 722 GIKLTEGEEVVSLIIAEPATGVDMLEEAEETADDDIQTANTADSVHIGPTQDDILCILTA 781

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+G+ +++
Sbjct: 782 TENGYGKCTPLAHYPRKGRGTQGVIGIQTTERNGRLVAA 820



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 7/147 (4%)

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST-CKLLVVSSKGNAFIVEESEIIAN 634
           PA  +       E     I   +  D V           +L  +  G       +     
Sbjct: 739 PATGVDMLEEAEETADDDIQTANTADSVHIGPTQDDILCILTATENGYGKCTPLAHYPRK 798

Query: 635 TRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R  +  + +     +   +  V+    D V ++ +   L+     +I  + R  +GV L
Sbjct: 799 GRGTQGVIGIQTTERNGRLVAAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTL 858

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAG 716
               +G     +  ++   L+  D   
Sbjct: 859 IRLSNGEKLQAVE-RLDASLSIPDETE 884


>gi|49475728|ref|YP_033769.1| DNA topoisomerase IV subunit A [Bartonella henselae str. Houston-1]
 gi|49238535|emb|CAF27771.1| Topoisomerase IV subunit a [Bartonella henselae str. Houston-1]
          Length = 749

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/747 (61%), Positives = 595/747 (79%), Gaps = 2/747 (0%)

Query: 6   ISNSNTLV--EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+   L   +E+++++ LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  
Sbjct: 1   MSDKMNLPFDKEHIESIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRL 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L+ G ++ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LKLNPGHSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQNFAVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+SGI
Sbjct: 121 DNAAAMRYTEARMTEVAALLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP HNV E+C+AAL LI +P    E+L  +++GPDFPTGGI+VE ++SI ESY
Sbjct: 181 AVGMATSIPPHNVSELCDAALHLIAHPNARDEELNHFVLGPDFPTGGILVEPKKSIEESY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R+GRG FR+R+RW  E   RGS+ +VVTEIPYQVQKSRLIEK AEL++A+R+P+LEDIRD
Sbjct: 241 RVGRGFFRLRSRWHQETGNRGSYVLVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAED+RIVL PKNR++DP++LMES+F L+D E RFPLN+NVLS G+VP V+ L   LK+
Sbjct: 301 ESAEDIRIVLIPKNRTVDPEILMESLFKLTDFEIRFPLNLNVLSFGKVPNVLSLRESLKQ 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL HR+EVL RRS +++  I+RR+EIL G LI YLN+DE+I IIR ED+PK  ++ RF L
Sbjct: 361 WLEHRQEVLIRRSRYQLDEIERRLEILHGYLITYLNLDEVIQIIREEDEPKKKLIDRFEL 420

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TENQ +AILN+RLRSLRKLEE++I+ E + L AEKEK+ +LL+S  +QW  I+ EI +V+
Sbjct: 421 TENQAEAILNMRLRSLRKLEEFEIRKEFETLRAEKEKLQNLLDSRTKQWKIISEEIIKVR 480

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           ++F   T LG+RRTTF E  R D   + QAMIEKEP+T+VIS +GW+R+LK H  D +AL
Sbjct: 481 KVFGPHTLLGKRRTTFEEAPRHDFDDIYQAMIEKEPVTIVISEKGWMRALKGHLSDYNAL 540

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FKEGD LK+A  A TTD+I+++ST GK + + A +L  GRGHGE I++L+D++   D++
Sbjct: 541 SFKEGDCLKLAFPAFTTDKIVVISTGGKFFAIAANSLPGGRGHGEPIRILVDMDDEHDLL 600

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           TAFV+ +  KLL+VSS GN FIV  +E+IANTRKGK  + V   +K+KL V V GDHVAV
Sbjct: 601 TAFVHHTQEKLLLVSSHGNGFIVPATEVIANTRKGKQVMNVKFPDKVKLCVPVKGDHVAV 660

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           VGENRK+LIF+I+QIPEMSRGKGVRLQ YK GG+ DV  F + EGL+W D+A R +NR  
Sbjct: 661 VGENRKMLIFAIEQIPEMSRGKGVRLQRYKQGGVVDVKTFNLSEGLSWQDTAERCFNRQA 720

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +DL+ W+G R GVG +VPKGFP+SGKF
Sbjct: 721 SDLIEWMGVRSGVGRVVPKGFPKSGKF 747


>gi|110806200|ref|YP_689720.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401]
 gi|110615748|gb|ABF04415.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401]
          Length = 875

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I         +   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTECEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|27380168|ref|NP_771697.1| DNA topoisomerase IV subunit A [Bradyrhizobium japonicum USDA 110]
 gi|27353322|dbj|BAC50322.1| topoisomerase II [Bradyrhizobium japonicum USDA 110]
          Length = 751

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/735 (56%), Positives = 541/735 (73%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKKS
Sbjct: 12  EIHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEAR
Sbjct: 72  AKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L+G+DED V+FR  Y+ +  EP+V P  FPNLLANG  GIAVGMATSIP HN
Sbjct: 132 MTDVARLLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATSIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LI+ P+   + LL+++ GPDFPTGGI V+S+++I E+Y  GRG FRVRAR
Sbjct: 192 AAELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQAIAEAYTTGRGSFRVRAR 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE  RG+W +VVTEIP+ VQKSRLIEKIAEL   K++PL+ D+RDESAEDVRIV+ P
Sbjct: 252 WEQEEGARGTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLPLVGDVRDESAEDVRIVIEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K++++DP L+MES+F L+++E + PLN+NVL  GR+P+V+ L   L+EWL H R+VL RR
Sbjct: 312 KSKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVVGLAECLREWLDHLRDVLIRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S++R   I+ R+E+L G LIAYLNID++I IIR ED+PKP ++  F LTE Q +AILN+R
Sbjct: 372 SNYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIRTEDEPKPALMKAFKLTEVQAEAILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE +I++E  NL  E + I+++L S  +QW ++  ++ +V+++F   T LG+R
Sbjct: 432 LRSLRKLEEMEIRTEDKNLRNELKGINAVLASEAEQWKKVGEQVGKVRDMFGPKTPLGKR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RTTF +    D A +++A +E+EP+TVV+S++GWIR++K H  DLS L FK+ D L  A 
Sbjct: 492 RTTFADAPEHDLAAIEEAFVEREPVTVVVSDKGWIRTMKGHVEDLSGLAFKQDDRLGFAF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A TT ++LL +T+GK Y+L    L  GRGHGE I+L IDL      V  FV     K L
Sbjct: 552 FAETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQEAAPVALFVNKGGRKFL 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V S +G  F+V E + +  T+KGK  L V    + + V +V GD VAV+GENRK+L+F +
Sbjct: 612 VASHEGQGFVVNEDDCVGTTKKGKQVLNVDMPNEARTVTEVVGDTVAVIGENRKMLVFPL 671

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           DQIPEM+RG+GVRLQ YKDGG+SDV+ F    GLTW DSAGR ++ +  +L  W G R  
Sbjct: 672 DQIPEMARGRGVRLQKYKDGGLSDVVVFDAKAGLTWKDSAGREFSATMKELAEWQGTRAD 731

Query: 736 VGSLVPKGFPRSGKF 750
            G L PKGFP+S KF
Sbjct: 732 AGRLPPKGFPKSNKF 746


>gi|312863710|ref|ZP_07723948.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396]
 gi|311101246|gb|EFQ59451.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396]
          Length = 822

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/754 (32%), Positives = 396/754 (52%), Gaps = 16/754 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLAETIDAVELMMDNPEVTTRELMEVLPGPDFPTGG-LVMGRSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +    VP+++ L  IL +++AH++EV
Sbjct: 300 FIIEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEK-GVPKILSLRQILADYIAHQQEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+I IIRN           ++RF LTE Q 
Sbjct: 359 VVRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E ++LLA    +  +L   ++    I  E+ E K  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPERVIAIIKEELDESKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           +            +   D    +  +I       +    +   RS K     +      +
Sbjct: 479 ARRTELMVGEVVSLEDEDLIEEEDVVITLSSKGYIKRLAQDEFRSQKRGGRGVQGTGVND 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +  ++  G+ Y L    +       +   I  L+ L+  + I T 
Sbjct: 539 DDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETIQTV 598

Query: 606 FVYD-----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                        L+ V+ +G     +E+E     + G   LK+   +++  V   TG+ 
Sbjct: 599 INAKSDEASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTTGNE 658

Query: 661 VAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
             ++G      + F  D I  MSR   GV+  + +DG    V    I E    +    + 
Sbjct: 659 EIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGDQV-VGAAAITEDQEVLIVTEKG 717

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +        RGG G        ++G    
Sbjct: 718 YGKRTSATEYPTKGRGGKGIKTANITDKNGNLAG 751



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 81/231 (35%), Gaps = 10/231 (4%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           D G    T       + +     +       V  +     ++++ +   L AL  +EGD 
Sbjct: 590 DEGETIQTVINAKSDEASDNNHLVFVTRQGLVKRTKEAEFKNIRQN--GLIALKLREGDE 647

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L         + I++ +  G +       + S      A    + L     +V A     
Sbjct: 648 LINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMSRMA-AGVKGVTLRDGDQVVGAAAITE 706

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++L+V+ KG       +E     R GK     +  +K   +  +V V+GD  + V+ +
Sbjct: 707 DQEVLIVTEKGYGKRTSATEYPTKGRGGKGIKTANITDKNGNLAGIVTVSGDEDIMVITD 766

Query: 667 NRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              ++  ++  I +  R  +GV++        + ++ F + E         
Sbjct: 767 TGVIIRTAVANISQTGRATQGVKVMRL--DDTARIVTFALVEPEEVDQVTE 815



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 53/160 (33%), Gaps = 10/160 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
               ++ +  G+    K  ++         +  +  ++GD +  A        +L+++  
Sbjct: 657 NEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGDQVVGAAAITEDQEVLIVTEK 716

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G      A    +    G+ I+     + N ++           ++V++  G       +
Sbjct: 717 GYGKRTSATEYPTKGRGGKGIKTANITDKNGNLAGIVTVSGDEDIMVITDTGVIIRTAVA 776

Query: 630 EIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
            I    R   G   +++    ++     V  + V  V E+
Sbjct: 777 NISQTGRATQGVKVMRLDDTARIVTFALVEPEEVDQVTED 816


>gi|149693009|emb|CAK55539.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|149693015|emb|CAK55542.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 878

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/801 (33%), Positives = 405/801 (50%), Gaps = 68/801 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F        RRT   E++    
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSA 526

Query: 508 ATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S++G+          + +      SA   KE D +   L A+T
Sbjct: 527 DINIEDLISQENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANT 586

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        Y+    +
Sbjct: 587 HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNV 646

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
            + ++ G       +E       G   + ++  +++  V   +G D V +     K++ F
Sbjct: 647 FMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRF 706

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
             D +  M R   GVR            +     EG   +      Y +           
Sbjct: 707 KEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKS 765

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           R   G +  K   R+G  + +
Sbjct: 766 RATQGVISIKVTERNGSVVGA 786



 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 848


>gi|323487682|ref|ZP_08092940.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2]
 gi|323398416|gb|EGA91204.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2]
          Length = 852

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/758 (33%), Positives = 412/758 (54%), Gaps = 28/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
               V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +
Sbjct: 5   PSSGVEEINISTEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGITADKGY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYT
Sbjct: 65  KKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E++M++++  +L+ ++++ VD+RD Y+ ++ EP+V PS+FPNLL NGTSGIAVGMAT+IP
Sbjct: 125 ESKMSKISMELLRDLNKNTVDYRDNYDGQEKEPIVLPSRFPNLLVNGTSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H++ E  +A LAL DNP I+ E+L+E+I GPDFPTGGII+  R  I  +Y  G+G   +
Sbjct: 185 PHHLGETIDAVLALADNPAITTEELMEHIEGPDFPTGGIIL-GRSGIRRAYETGKGSVLI 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+   +E    G   I+V EIP+QV K+RLIEKIAEL+  K+I  + D+RDES  +   +
Sbjct: 244 RSVVDIETKPNGKEVIIVNEIPFQVNKARLIEKIAELVRDKKIDGITDLRDESDRNGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R     +L+ +++  + M+T F LNM  L     P+V+ L  IL  +L H++ V+
Sbjct: 304 VIEVRRDASASVLLNNLYKQTAMQTSFGLNMLALVD-GRPKVLSLKEILFHYLEHQKVVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F +   + R  IL+GL IA  +ID IIA+IR        +  +++ F+LTE Q  
Sbjct: 363 RRRTQFELTKAEDRAHILEGLRIALDHIDAIIALIRGSQTAEQARNGLMTDFNLTERQSQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I+ E   L+   E++  +L +  +    I  E+ E+K+ FS  
Sbjct: 423 AILDMRLQRLTGLERDKIEEEYQALVKLIEELRYILANEYRILEIIKEEMLEIKDRFSD- 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
               +RRT     +   +    + +I  E   + +++ G+I+          K     + 
Sbjct: 482 ----KRRTEIT--TGGAEMFEDEDLIPVEATVLTLTHNGYIKRLPANTYRSQKRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   E D ++  L+  T D IL  +  GK Y      +       +   +  L++++  
Sbjct: 536 GMGTNEDDFVEHLLYTSTHDTILFFTNKGKVYRKKGYQIPEYGRTAKGLPLVNLLEISKE 595

Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + +        +         + +G +     +      + G   + +  E+++  V   
Sbjct: 596 EKVTAVIRVKEFKEDSFFFFTTREGLSKRTPVTNYANIRQNGLIAISLREEDELISVKLT 655

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            G   + +  ++  L+ F    I  M R   GVR    ++G  + V    +      +  
Sbjct: 656 DGTKEMVIGTKDGALIRFPETDIRSMGRTASGVRGIRLREGD-AVVGMEILDPNDNVLVI 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +   +    +  RGG+G    +   ++G  ++
Sbjct: 715 TEKGYGKQTKESEYRVQSRGGMGIKTCQITDKNGPLVA 752



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 8/180 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 L A+  +E D L        T  +++ + DG     P  ++ S      +    
Sbjct: 632 NIRQNGLIAISLREEDELISVKLTDGTKEMVIGTKDGALIRFPETDIRSMGRTA-SGVRG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + D    +LV++ KG     +ESE    +R G       +   +   
Sbjct: 691 IRLREGDAVVGMEILDPNDNVLVITEKGYGKQTKESEYRVQSRGGMGIKTCQITDKNGP- 749

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  V G + + ++  N  L+   ++ I    R  +GVRL    D  +   +     +
Sbjct: 750 LVAVRTVNGTEDIMLITVNGILIRMDVNDISTTGRSTQGVRLIRLGDDEVVATVAKVKKD 809


>gi|332522461|ref|ZP_08398713.1| DNA gyrase, A subunit [Streptococcus porcinus str. Jelinkova 176]
 gi|332313725|gb|EGJ26710.1| DNA gyrase, A subunit [Streptococcus porcinus str. Jelinkova 176]
          Length = 836

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 401/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++PE +   L+E I GPDFPTG ++   R  I  +Y  G+G   
Sbjct: 181 PPHNLGESIDAVKMVMEHPECTTRDLMEVIPGPDFPTGAMV-MGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIEITKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +     VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKLTSLQTNFSF-NMLAIENGVPKILTLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLL+A  ++DE+IAIIRN       +  ++SRF L+E Q 
Sbjct: 359 ITRRTRFDKEKAEARAHILEGLLVALDHLDEVIAIIRNSQTDVIAQAELMSRFQLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+A    +  +L    +    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLIALIADLADILAKPDRISAIIIQEMDEIKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE E + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTEL--MVGEVLSLEDEDLIEVEDVLITLSNKGYIKRLAQDEFRSQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                 + D +K  +   T D +L  +  G+ Y L A  +       +   I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G       SE     + G   L +   +++  V+
Sbjct: 592 EETIQTIINARKEDIDNKFFFFTTRQGLVKRTNASEFGNIRQNGLRALNLKDGDELINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G + + +  ++   + F    I  M R   GVR    +D  +  V   +I +    +
Sbjct: 652 LTDGSEDIIIGTKSGYSVRFEEASIRNMGRSATGVRGVKLRDDDLV-VGASRISDNQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G+   
Sbjct: 711 IITEKGYGKRTPATEYPTKGRGGKGIKTANITAKNGQLAG 750



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 5/119 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           + L  +  +V A       ++L+++ KG       +E     R GK      +   + + 
Sbjct: 689 VKLRDDDLVVGASRISDNQEVLIITEKGYGKRTPATEYPTKGRGGKGIKTANITAKNGQL 748

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
             LV     + + ++     ++  SI  + +  R   GV++                 E
Sbjct: 749 AGLVTVTGHEDIMIITNKGVIIRTSIADVSQTGRSTMGVKVMRLDQDSKIVTFALVDPE 807


>gi|296876569|ref|ZP_06900620.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432562|gb|EFH18358.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
          Length = 818

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 400/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILGAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN           +++F L+E Q 
Sbjct: 359 VTRRTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLVALIADLADILAKPERVATIIKEELEEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 A-----RRTEL--MVGEVLSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   + +G       +E     + G   L +  E+++  V 
Sbjct: 592 GESIQTIINVEQDRSDEAYLFFTTRQGLVKRTNVAEFSNIRQNGLKALNLRDEDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G+  V +  +    + F+   +  M R   GVR  + ++G         + +    +
Sbjct: 652 LTDGNADVIIGTKYGYSVRFNEAVVRNMGRSATGVRGVNLREGDRVVGASV-VTDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTMASEYPTKGRGGKGIKTANITEKNGPLAG 750



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 66/212 (31%), Gaps = 12/212 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          +     E      + +G ++              L AL+ ++ D L 
Sbjct: 589 LDEGESIQTIINVEQDRSDEAYLFFTTRQGLVKRTNVAEFSNIRQNGLKALNLRDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + +       ++  ++L     +V A V     
Sbjct: 649 NVFLTDGNADVIIGTKYGYSVRFNEAVVRNMGRSATGVRG-VNLREGDRVVGASVVTDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++L+++ KG       SE     R GK      +   +     L+     + + ++ +  
Sbjct: 708 EVLIITEKGYGKRTMASEYPTKGRGGKGIKTANITEKNGPLAGLLTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
            ++   +  I +  R  +GV++          
Sbjct: 768 VMIRTGVANISQTGRSTQGVKVMRLDQDAKIV 799


>gi|322389479|ref|ZP_08063031.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 903]
 gi|321143857|gb|EFX39283.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 903]
          Length = 818

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 400/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILGAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN           +++F L+E Q 
Sbjct: 359 VTRRTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLVALIADLADILAKPERVATIIKEELEEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 A-----RRTEL--MIGEVLSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   + +G       +E     + G   L +  E+++  V 
Sbjct: 592 GESIQTIINVEQDRSDEAYLFFTTRQGLVKRTNVAEFSNIRQNGLKALNLRDEDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G+  V +  +    + F+   +  M R   GVR  + ++G         + +    +
Sbjct: 652 LTDGNADVIIGTKYGYSVRFNEAVVRNMGRSATGVRGVNLREGDKVVGASV-VTDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTMASEYPTKGRGGKGIKTANITEKNGPLAG 750



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 67/212 (31%), Gaps = 12/212 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          +     E      + +G ++              L AL+ ++ D L 
Sbjct: 589 LDEGESIQTIINVEQDRSDEAYLFFTTRQGLVKRTNVAEFSNIRQNGLKALNLRDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + +       ++  ++L     +V A V     
Sbjct: 649 NVFLTDGNADVIIGTKYGYSVRFNEAVVRNMGRSATGVRG-VNLREGDKVVGASVVTDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++L+++ KG       SE     R GK      +   +     L+     + + ++ +  
Sbjct: 708 EVLIITEKGYGKRTMASEYPTKGRGGKGIKTANITEKNGPLAGLLTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
            ++  S+  I +  R  +GV++          
Sbjct: 768 VMIRTSVGNISQTGRSTQGVKVMRLDQDAKIV 799


>gi|42518090|ref|NP_964020.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533]
 gi|41582374|gb|AAS07986.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533]
 gi|329666397|gb|AEB92345.1| DNA gyrase subunit A [Lactobacillus johnsonii DPC 6026]
          Length = 829

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 392/765 (51%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGG IV  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGG-IVMGRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVVTE+PY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +     P  + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIV-NGAPHFLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII IIR           ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E  +L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           ++ F        RRT   E      +   + +IE++ + + +++ G+I+ + +       
Sbjct: 479 QKRFGD-----DRRTKIAE--GEAVSIEDEDLIEQKDVLLTLTHNGYIKRMPADEFKVQN 531

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +  ++ D +   + + T D +L  +  GK Y+  A  +     + +   I  
Sbjct: 532 RGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++L+  + I              L  V+  G     + SE     R G   L +   ++
Sbjct: 592 LLELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDE 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+   +  M R   GVR  + +D     V    +  
Sbjct: 652 LNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSMGRTAAGVRGINLRDNDYV-VGSDILEP 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G        ++G    
Sbjct: 711 DSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAG 755



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 67/189 (35%), Gaps = 6/189 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               L AL  ++GD L   L       IL+ +  G A T    ++ S
Sbjct: 624 TVKRTKVSEFQNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRS 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 A    I+L  N  +V + + +   ++LV+S KG       SE     R GK   
Sbjct: 684 MGRTA-AGVRGINLRDNDYVVGSDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIK 742

Query: 643 KVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
             +       +  V  V GD  + ++     ++ F +D + +  R   GVRL    DG  
Sbjct: 743 TANITEKNGPLAGVTVVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQ 802

Query: 698 SDVICFKIC 706
              I     
Sbjct: 803 VASITAVPK 811


>gi|87119282|ref|ZP_01075180.1| DNA gyrase subunit A [Marinomonas sp. MED121]
 gi|86165673|gb|EAQ66940.1| DNA gyrase subunit A [Marinomonas sp. MED121]
          Length = 893

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/808 (31%), Positives = 400/808 (49%), Gaps = 77/808 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E   D+  A+
Sbjct: 4   LAKEITPVSIENELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEEKNDWNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGD+ AA RYT
Sbjct: 64  KKSARIVGNVIGKYHPHGDTAVYDAIVRLAQPFSMRYTLVDGQGNFGSVDGDNPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A   L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMEKIAHNFLMDLEKETVDFVPNYDGTEHMPEVMPTRIPGLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ + +LALIDN  I+I++L+EYI GPDFPT    +  R  IV++Y+ GRG   +
Sbjct: 184 PHNLSEVIDGSLALIDNEAITIDELMEYIPGPDFPTSA-FINGRAGIVDAYKTGRGKIYM 242

Query: 253 RARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR  +E +       IV TEIPYQ+ K+R+IEKIAEL+  K++  + ++RDES +D   
Sbjct: 243 RARHHIEPMEKGNREAIVFTEIPYQLNKARVIEKIAELVKDKKLEGISELRDESDKDGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + D+++ ++F+ + ++  F +NM  L     P+++ L  +L+ ++ HRREV
Sbjct: 303 IVIELRRGENADVVVNNLFIQTQLQGVFGINMVALVD-GRPELLNLKQVLECFVKHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------- 415
           + RR+ F ++    R  +L+GL +A  NI+EII +IR                       
Sbjct: 362 VTRRTIFELRKARERGHVLEGLAVALANIEEIIELIRQSPTSAEAKEKLVSKAWAPGDVS 421

Query: 416 ---------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+  Q  AIL+LRL  L  LE  ++++E   L
Sbjct: 422 AMLERAGTDACRPDDLPEEFGFKDGSYYLSPVQAQAILDLRLHRLTGLEHEKLQNEYKAL 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +    ++  +L S  +    I  E+ E+K  F        RRT       + +      +
Sbjct: 482 IELIAELLHILASPARLMEVIREELEEIKAQFGD-----VRRTEIL---TSRQDLTVADL 533

Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++ P+ V ISN G+         ++ +      S+   K+ D +   L   + D I+L 
Sbjct: 534 IDEAPMVVTISNTGYAKSQPLEEYQAQRRGGRGKSSSSMKDEDHISHLLVTSSHDTIMLF 593

Query: 567 STDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY---------------- 608
           S  GK Y L    +     + +   I  L+ L+  + I                      
Sbjct: 594 SNFGKVYWLRVFEIPVASRNAKGRPIVNLLPLSEGESISALLPLVAPEKSDAEDAETEVS 653

Query: 609 -DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
            D+   + + ++ G                G   L +   +++  V    G D + +V  
Sbjct: 654 EDAESFIFMATANGTVKKTAMQHFARPRSTGLIALSLDESDELVGVSITNGNDDIMLVSS 713

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F    +  M R   GVR       G   V      EG++ + +    Y +    
Sbjct: 714 TGKTIRFKESDVRAMGRTAAGVRGIKLAAEGAKVVSLIVPEEGMSVLTACEHGYGKRTAI 773

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +  RGG G +  +   R+G  + +
Sbjct: 774 DDFPVYGRGGQGVIGIQVSDRNGPVVGA 801



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 64/194 (32%), Gaps = 8/194 (4%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +     TV  +        +  S  L AL   E D L      +  D I+L+S+ GK  
Sbjct: 661 FMATANGTVKKTAMQHFARPR--STGLIALSLDESDELVGVSITNGNDDIMLVSSTGKTI 718

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                ++ +       ++ +        +V+  V +    +L     G        +   
Sbjct: 719 RFKESDVRAMGRTAAGVRGIKLAAEGAKVVSLIVPEEGMSVLTACEHGYGKRTAIDDFPV 778

Query: 634 NTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
             R G+  + +     +   +  V     D + ++ +   L+   + ++    R  +GV 
Sbjct: 779 YGRGGQGVIGIQVSDRNGPVVGAVQVADDDEIILITDQGTLVRTRVSEVSCQGRNTQGVT 838

Query: 689 LQSY-KDGGISDVI 701
           L     +  +  V+
Sbjct: 839 LIRLTNEEQLVGVV 852



 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
              G        +       G+ +  +   + N  +V A       ++++++ +G     
Sbjct: 763 CEHGYGKRTAIDDFPVYGRGGQGVIGIQVSDRNGPVVGAVQVADDDEIILITDQGTLVRT 822

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVK 655
             SE+    R   G T +++++EE++  VV+
Sbjct: 823 RVSEVSCQGRNTQGVTLIRLTNEEQLVGVVR 853


>gi|15839141|ref|NP_299829.1| DNA gyrase subunit A [Xylella fastidiosa 9a5c]
 gi|9107763|gb|AAF85349.1|AE004062_4 DNA gyrase subunit A [Xylella fastidiosa 9a5c]
          Length = 893

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/819 (31%), Positives = 394/819 (48%), Gaps = 80/819 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     ++
Sbjct: 4   TAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARI+GEV+GK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGD AAA RYT
Sbjct: 64  FKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM++++  ++  +D++ VDF+  Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP
Sbjct: 124 ESRMSRISHDLMADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALIDNPE+ ++ L+EYI GPDFPT G I+     IV  YR GRG  R+
Sbjct: 184 PHNLVESINACIALIDNPELDVDGLMEYIPGPDFPTAG-IINGTAGIVAGYRTGRGRVRM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E    G   IVVTEIPYQV K+RLIEKIAEL+  KRI  + ++RDES +D   +
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME+ F +NM  L     PQ++ L  IL+ ++ HRREV+
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVD-GRPQLLNLKQILQAFIRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P+                  
Sbjct: 362 TRRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGT 421

Query: 420 ------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + LTE QV  IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
                +  +L +       I  E+ +++E +        R +          A     + 
Sbjct: 482 EIIVGLIRILENPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ K      +A+  KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               L        G  I   I L   + +        Y     +   + +G       SE
Sbjct: 602 SVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATRQGTVKKTPLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    G+  V +   N K + FS + +  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMGRTATGVR 721

Query: 689 LQSYKDGGISDVICFKI----------------------------------CEGLTWIDS 714
                +G     +                                       + L  + +
Sbjct: 722 GIKLTEGEEVVSLIIAEPATGVDMLEEAEETADDDIQTANTADSVHIDPTQDDILCILTA 781

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+G+ +++
Sbjct: 782 TENGYGKCTPLAHYPRKGRGTQGVIGIQTTERNGRLVAA 820



 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 7/147 (4%)

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST-CKLLVVSSKGNAFIVEESEIIAN 634
           PA  +       E     I   +  D V           +L  +  G       +     
Sbjct: 739 PATGVDMLEEAEETADDDIQTANTADSVHIDPTQDDILCILTATENGYGKCTPLAHYPRK 798

Query: 635 TRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R  +  + +     +   +  V+    D V ++ +   L+     +I  + R  +GV L
Sbjct: 799 GRGTQGVIGIQTTERNGRLVAAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTL 858

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAG 716
               +G     +  ++   L+  D   
Sbjct: 859 IRLSNGEKLQAVE-RLDASLSIPDETE 884


>gi|322516558|ref|ZP_08069474.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           vestibularis ATCC 49124]
 gi|322124946|gb|EFX96366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           vestibularis ATCC 49124]
          Length = 822

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/754 (32%), Positives = 396/754 (52%), Gaps = 16/754 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGG-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +    VP+++ L  IL +++AH++EV
Sbjct: 300 FIIEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEK-GVPKILSLRQILADYIAHQQEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+I IIRN           ++RF LTE Q 
Sbjct: 359 VVRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E ++LLA    +  +L   ++    I  E+ E K  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPERVIAIIKEELDESKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           +            +   D    +  +I       +    +   RS K     +      +
Sbjct: 479 ARRTELMVGEVVSLEDEDLIEEEDVVITLSSKGYIKRLAQDEFRSQKRGGRGVQGTGVND 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +  ++  G+ Y L    +       +   I  L+ L+  + I T 
Sbjct: 539 DDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGESIQTV 598

Query: 606 FV-----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                        L+ V+ +G     +E+E     + G   LK+   +++  V   TG+ 
Sbjct: 599 INAKSDEGSDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTTGNE 658

Query: 661 VAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
             ++G      + F  D I  MSR   GV+  + +DG    V    I E    +    + 
Sbjct: 659 EIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGDQV-VGAAAITEDQEVLIVTEKG 717

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +        RGG G        ++G    
Sbjct: 718 YGKRTSATEYPTKGRGGKGIKTANITDKNGNLAG 751



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 81/231 (35%), Gaps = 10/231 (4%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           D G    T       + +     +       V  +     ++++ +   L AL  +EGD 
Sbjct: 590 DEGESIQTVINAKSDEGSDNNHLVFVTRQGLVKRTKEAEFKNIRQN--GLIALKLREGDE 647

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L         + I++ +  G +       + S      A    + L     +V A     
Sbjct: 648 LINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMSRMA-AGVKGVTLRDGDQVVGAAAITE 706

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++L+V+ KG       +E     R GK     +  +K   +  +V V+GD  + V+ +
Sbjct: 707 DQEVLIVTEKGYGKRTSATEYPTKGRGGKGIKTANITDKNGNLAGIVTVSGDEDIMVITD 766

Query: 667 NRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              ++  ++  I +  R  +GV++        + ++ F + E         
Sbjct: 767 TGVIIRTAVANISQTGRATQGVKVMRL--DDTARIVTFALVEPEEVDQVTE 815



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 53/160 (33%), Gaps = 10/160 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
               ++ +  G+    K  ++         +  +  ++GD +  A        +L+++  
Sbjct: 657 NEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGDQVVGAAAITEDQEVLIVTEK 716

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G      A    +    G+ I+     + N ++           ++V++  G       +
Sbjct: 717 GYGKRTSATEYPTKGRGGKGIKTANITDKNGNLAGIVTVSGDEDIMVITDTGVIIRTAVA 776

Query: 630 EIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
            I    R   G   +++    ++     V  + V  V E+
Sbjct: 777 NISQTGRATQGVKVMRLDDTARIVTFALVEPEEVDQVTED 816


>gi|56708601|ref|YP_170497.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110671072|ref|YP_667629.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457786|ref|ZP_03666259.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371233|ref|ZP_04987235.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033]
 gi|254875466|ref|ZP_05248176.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56605093|emb|CAG46208.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321405|emb|CAL09591.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151569473|gb|EDN35127.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033]
 gi|254841465|gb|EET19901.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159830|gb|ADA79221.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 868

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/781 (31%), Positives = 398/781 (50%), Gaps = 48/781 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +ALIDNP ++IE+L+EYI+ PDFPTG  I    + I+E+Y+ GRG   +RA+  +
Sbjct: 190 VINGTIALIDNPNLTIEELIEYILAPDFPTGSYIN-GTDGILEAYKTGRGRVIMRAKADI 248

Query: 259 EEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            E    G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR+EV+ RR+ 
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHRKEVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           F ++    R  IL+GLL++  NIDE+I +I+    P     S                  
Sbjct: 368 FELRKSKERAHILEGLLLSLANIDEMIKLIKASPSPADAKESMLARSWNGSMVKSMLEGV 427

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                ++LTE Q DAIL LRL  L  LE+ +I +E   L+   +
Sbjct: 428 DVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRVK 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            + S+L+  K+    +  E+ E+++ +          +          A     +     
Sbjct: 488 YLISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMD 547

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             V         + K   V  SA   KE DS+   + A T D +L  S+ G+ Y     +
Sbjct: 548 GYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYD 607

Query: 580 LLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIAN 634
                   +   I  ++ L  ++ I        ++    + + +  G    V+ SE    
Sbjct: 608 FPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
             KGK  + ++  +++  V    G+  + +  +  K + F    +  M R   GV     
Sbjct: 668 RSKGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGMRL 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +     +    + +    Y +          KR   G +      R+GK + 
Sbjct: 728 HHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVV 787

Query: 753 S 753
           +
Sbjct: 788 A 788



 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 7/181 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S    A+   +GD L          +I++ S  GKA      ++ +      A    
Sbjct: 666 RPRSKGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSA-AGVTG 724

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVV-SSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEK 649
           + L+HNQ IV+  V +    +++  +  G       SE     R   G   +  S    K
Sbjct: 725 MRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGK 784

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           + + V V  D  + ++ +N  L+  S D++ E  R  +GVRL + ++      +     +
Sbjct: 785 VVVAVLVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQD 844

Query: 708 G 708
            
Sbjct: 845 D 845



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G             +   + +  +     N  +V A + ++   +++++  G     
Sbjct: 750 TENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVMITDNGTLVRT 809

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
              E+    R   G   + + + EK+  +  V  D V
Sbjct: 810 SSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDV 846


>gi|206901654|ref|YP_002250993.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12]
 gi|206740757|gb|ACI19815.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12]
          Length = 808

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/757 (32%), Positives = 396/757 (52%), Gaps = 28/757 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  +  V L   +E  YL YA+S I  RA+PD RDG KPV RRII++M E G+     ++
Sbjct: 4   KNKIILVGLEREMESSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VG V+G+ HPHGD +VY++LVR+AQ F  RYPLI G GNFG+IDGD  AA RYTE
Sbjct: 64  KSAHVVGNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R++ +A  ++  +++D VDF   Y+    EPVV P+K P LL NG+SGIAVGMAT+IP 
Sbjct: 124 VRLSPIASELIADIEKDVVDFIPNYDNSLKEPVVLPTKIPQLLMNGSSGIAVGMATNIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A L LI+ PE  IE+LL +I GPDFPTGG I+   + I ESY  G+G   VR
Sbjct: 184 HNLGELIDALLYLIEKPEAEIEELLNFIKGPDFPTGGTII-GTKGIRESYLTGKGKLIVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +EE  +G   I++ EIPY V KS L+ +IAEL+  ++I  ++D+RDES      V+
Sbjct: 243 GKIAIEETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQERKITGIKDLRDESDRHGIRVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +DP +++  ++  + ++T F + + +  +   P+V  L  +L  +L HR+ V+ 
Sbjct: 303 IELKKDVDPQIVINQLYKHTQLQTTFGV-IMLAILDGQPKVFNLKELLNIFLEHRKNVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ + ++    R  IL+GLLIA  ++DE+IAIIR  +     +  ++ +F LT+ Q  A
Sbjct: 362 RRTKYDLEKARARAHILEGLLIALDHLDEVIAIIRQSENAEKAREKLMLKFKLTQIQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L +LE+ ++  E++ +     +++ +L   K+ W  I+ E++E+K  ++   
Sbjct: 422 ILDMRLHQLTRLEKEKLLEEMNQIKENIAQLEKILKDEKELWRVISEELKEIKRKYADE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               R+T   E          + ++   P  V I+   +I+          +     L+ 
Sbjct: 481 ----RKTLIEE--EEKSDITIEDILPDNPEVVCITQDSYIKRLPLSTYQLQRRGGKGLNT 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           L     D +   +   T   + L S  GK Y L    L       +   I+  +++++++
Sbjct: 535 LANNNDDVITSFVVTSTRSTLFLFSNKGKVYALKTYELDETSRQSKGVPIKEYLNIDNDE 594

Query: 601 DIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I      +          V+SKG        E     + G   +K+  E+ +  V   +
Sbjct: 595 KITEIISVNEFPKNLYFFFVTSKGIVKKTSIEEFENVRKSGIYAIKLGEEDYLVNVFLTS 654

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G D + +  +    + F    + EM R  +GV     +    S +      E    +   
Sbjct: 655 GNDEIMIFTKKGNAIRFHEKDVREMGRIAQGVIGIKLRKDD-SVIGGVIFKESKQIVLVT 713

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +  N     + KRGG+G    K  P++G  + 
Sbjct: 714 TYGIGKRVNPNEFSVQKRGGMGVRAIKITPKTGDLVG 750



 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 75/226 (33%), Gaps = 9/226 (3%)

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K            E+   ++              +V                + A+   E
Sbjct: 585 KEYLNIDNDEKITEIISVNEFPKNLYFFFVTSKGIVK-KTSIEEFENVRKSGIYAIKLGE 643

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            D L         D I++ +  G A      ++       + +   I L  +  ++   +
Sbjct: 644 EDYLVNVFLTSGNDEIMIFTKKGNAIRFHEKDVREMGRIAQGVIG-IKLRKDDSVIGGVI 702

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKV--SSEEKMKLVVKV-TGDHVA 662
           +  + ++++V++ G    V  +E     R G     +K+   + + +  V  V   D + 
Sbjct: 703 FKESKQIVLVTTYGIGKRVNPNEFSVQKRGGMGVRAIKITPKTGD-LVGVKNVSENDEIL 761

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  +  +++   ++ IP +SR  +GV+L    +      I     E
Sbjct: 762 ISTKRGQIIRIPVNNIPILSRNSQGVKLVKLNEDDYVVSIDLVENE 807


>gi|254373410|ref|ZP_04988898.1| hypothetical protein FTCG_01000 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571136|gb|EDN36790.1| hypothetical protein FTCG_01000 [Francisella novicida GA99-3549]
          Length = 868

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/781 (31%), Positives = 395/781 (50%), Gaps = 48/781 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +ALIDNP ++IE+L+EYI  PDFPTG  I    + I+E+Y+ GRG   +RA+  +
Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYIN-GTDGILEAYKTGRGRVIMRAKADI 248

Query: 259 EEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            E    G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR+EV+ RR+ 
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHRKEVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           F ++    R  IL+GLL++  NIDE+I +I+    P     S                  
Sbjct: 368 FELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGV 427

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                ++LTE Q DAIL LRL  L  LE+ +I +E   L+   +
Sbjct: 428 DVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIK 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            + S+L+   +    +  E+ E+++ +          +          A     +     
Sbjct: 488 YLISILSDINELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMD 547

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             V         + K   V  SA   KE DS+   + A T D +L  S+ G+ Y     +
Sbjct: 548 GYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYD 607

Query: 580 LLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIAN 634
                   +   I  ++ L  ++ I        ++    + + +  G    V+ SE    
Sbjct: 608 FPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
              GK  + ++  +++  V    G+  + +  +  K + F    +  M R   GV     
Sbjct: 668 RSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGMRL 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +     +    + +    Y +          KR   G +      R+GK + 
Sbjct: 728 HHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVV 787

Query: 753 S 753
           +
Sbjct: 788 A 788


>gi|115499631|dbj|BAF33489.1| DNA gyrase subunit A [Listonella anguillarum]
          Length = 907

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/817 (31%), Positives = 395/817 (48%), Gaps = 76/817 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ E  LA I+N +I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLTEVVEGCLAYINNEDITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKADIEVEKNGKETIIVREIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L    +P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALD-NGLPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARDRAHILEALALALANIDEIIELIRRAATPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 DLGNVASMLERAGTDAARPEWLEPEYGIRDGKYFLTEQQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ F  +        T         A
Sbjct: 475 DEYKALLEEIAELMHILASTERLMEVIREELETVRDAFGDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
               A+       V         + +      SA   KE D ++  L A+T D IL  ST
Sbjct: 535 REDVAVTLSHAGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDHILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I        +     + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVTEFSDDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                S        G   + +  ++ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLSSFANVRSNGLIAVNLREDDSLIGVDITDGNSEIMLFSKFGKVVRFKESEETPVL 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     +G     +     +G   +    
Sbjct: 715 DENGQPVLDEHGQPEIKFKGVRAMGRTASGVRGMKLAEGDQVVSLIVPSNDGD-ILTVTQ 773

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +           R   G +  K   R+G+   +
Sbjct: 774 NGYGKRTTLGEYPTKGRATQGVVSIKVSERNGQVAGA 810


>gi|170698422|ref|ZP_02889495.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10]
 gi|170136675|gb|EDT04930.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10]
          Length = 851

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/782 (31%), Positives = 376/782 (48%), Gaps = 56/782 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++N E +I++L+E I  PDFPT G I+     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNSEATIDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRATTHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVD-GQPKLLNLKEILQCFLSHRREVLTRRTIYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------------------ 414
            R  +L+GL +A  NIDE IAII+    P                               
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAETENASA 418

Query: 415 ----------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E   ++A+ 
Sbjct: 419 GGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  VK  F  +             +          +    
Sbjct: 479 ADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVVTMSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ K       A   KE D ++    A+T D IL  S  G+ Y +   
Sbjct: 539 AGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVY 598

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G  I  +  L   + I        + +   + + +S G            
Sbjct: 599 EVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFVFMATSLGTVKKTPLEAFSR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +KG   + +   + +       G   V +  ++ K + F  + +  M R  +GVR   
Sbjct: 659 PMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQ 718

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +DG     +     E  T + +    Y +           RG  G +  +   R+GK +
Sbjct: 719 LEDGQQVIALLVAGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGKVV 778

Query: 752 SS 753
           ++
Sbjct: 779 AA 780



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 662 KGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMGREARGVRGMQLED 721

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    K+    
Sbjct: 722 GQQVIALLVAGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGKVVAAT 781

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 782 LVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 824


>gi|254469959|ref|ZP_05083364.1| DNA topoisomerase IV, A subunit [Pseudovibrio sp. JE062]
 gi|211961794|gb|EEA96989.1| DNA topoisomerase IV, A subunit [Pseudovibrio sp. JE062]
          Length = 750

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/742 (57%), Positives = 555/742 (74%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              + ++  + ++L+ ALEERYL+YAL+TI  RA+PD+RDG KPVHRRI++ M  + LD 
Sbjct: 3   QEVIGQDGPETINLKDALEERYLSYALTTIMHRALPDVRDGLKPVHRRILYGMRLLKLDP 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              FKK AR+VG+V+GK HPHGD ++YD+LVRLAQ F  RYP++ GQGNFGNIDGDSAAA
Sbjct: 63  NQGFKKCARVVGDVMGKYHPHGDAAIYDALVRLAQDFSVRYPMVDGQGNFGNIDGDSAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT VA  IL G++E+AVDFR+TY+  DSEPVV P  FPNLLANG++GIAVGMA
Sbjct: 123 MRYTEARMTDVATRILDGLNENAVDFRETYDGLDSEPVVLPGSFPNLLANGSTGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HN  E+C A   LI  P+  +E+LLE+I GPDFPTGG IV  + SI+E+Y+ GRG
Sbjct: 183 TSIPPHNAHELCNACQLLISKPDAEVEELLEHIKGPDFPTGGTIVNDKGSILEAYKTGRG 242

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            FR RA+W  EE  RG++ IVVTEIPY VQKSRLIEKIAEL++A+++PLL+DIRDESAED
Sbjct: 243 SFRTRAKWHKEEGQRGTYNIVVTEIPYLVQKSRLIEKIAELLMARKLPLLDDIRDESAED 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           VR+VL P+N+++DP+LLM S+F L+D+E RF LNMNVLS G VP+VM L  +L+EWL H+
Sbjct: 303 VRVVLVPRNKNVDPELLMASLFKLTDLENRFSLNMNVLSKGVVPKVMSLKEVLQEWLEHQ 362

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           +EVL RRS+ R+  I+ R+E+L+G L+AYLNIDE+I IIR ED  K  ++  F LTE Q 
Sbjct: 363 KEVLVRRSNHRLDQINHRLEVLEGYLVAYLNIDEVIRIIREEDDAKASLIKAFDLTEVQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AILN+RLRSLRKLEE++IK E D L  EK  +++LL S K+QWN+++ ++ E+ + +  
Sbjct: 423 EAILNMRLRSLRKLEEFEIKKEHDKLSKEKAGLEALLASDKKQWNRVSKQVGEIGKAYGP 482

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
            T++G RRT F      D   + QAMIEKEPITVVIS +GWIR+LK H  D++ L FK+G
Sbjct: 483 ETEIGARRTDFGTADDRDLEEINQAMIEKEPITVVISEKGWIRTLKGHVQDVTNLAFKQG 542

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L ++ HA TT +IL+ ++ GK YTL A  L  GRGHGE I+L++D++  Q+I++AFV+
Sbjct: 543 DQLHLSFHAETTSKILIFTSGGKFYTLGADKLPGGRGHGEPIRLMLDMDETQEIISAFVH 602

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           D   KLL+ +     F+V+E ++IANTRKGK  L V++  K  L V   GD+VAV+G NR
Sbjct: 603 DPERKLLMSTDGAYGFVVQEKDVIANTRKGKQVLNVTAPAKAVLCVPAIGDYVAVIGHNR 662

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           KLL F + QI  M+RG+GVRLQ Y+DGGISD+  F   EGLTW D++GR + R+  ++  
Sbjct: 663 KLLTFPLAQIAVMTRGRGVRLQRYRDGGISDIKTFDSEEGLTWTDASGRIFKRTLEEMQD 722

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
           W G RG  G L P GFPR+ KF
Sbjct: 723 WRGDRGQAGRLPPNGFPRTNKF 744


>gi|310657322|ref|YP_003935043.1| DNA gyrase subunit a [Clostridium sticklandii DSM 519]
 gi|308824100|emb|CBH20138.1| DNA gyrase (type II topoisomerase), subunit A [Clostridium
           sticklandii]
          Length = 817

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/766 (32%), Positives = 415/766 (54%), Gaps = 29/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + + +  + +   + + Y+ YA+S I  RA+PD+RDG KPVHRRI+ AM+++G
Sbjct: 1   MSEEKNEMIDKIVDIEIEDEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRILFAMNDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    +++KSA +VG+V+GK HPHGD +VYD++V+LAQ F  RYPL++G GNFG+IDGDS
Sbjct: 61  LVPEKSYRKSATVVGDVLGKYHPHGDTAVYDAMVKLAQDFSTRYPLVNGHGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++   +L+ +D++ VDF   Y+E   EP V P+++PNLL NG++GIAV
Sbjct: 121 AAAMRYTEAKMQKLTLELLKDIDKETVDFTLNYDERLKEPSVLPARYPNLLVNGSNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN++E+ +A + LIDN E ++E ++++I GPDFPTG   +  + SI ++Y  
Sbjct: 181 GMATSIPPHNLREVIDAVVELIDNEEATVEDMMKHIKGPDFPTGA-TIMGKGSIRDAYMT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VR++  +EE+  G   I+VTEIPYQV K+R+IEKIA+L+  KRI  + D+RDES
Sbjct: 240 GRGKVTVRSKADIEELPNGKSQIIVTEIPYQVNKARMIEKIADLVKDKRIEGITDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R ++P++++ +++  S ++  F + M  L     P+V+ +  +L  +L
Sbjct: 300 NRDGIRIVIEVRRDVNPNIVLNNLYKHSQLQDVFSIIMLSLV-NGEPKVLNIRDMLVHYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+ + ++    R  IL+GL+IA  NID +I IIR  D     K  +   F 
Sbjct: 359 NHQKNVVRRRTEYDLRKAKERAHILEGLIIALDNIDRVIKIIRGSDNGSIAKEKLTEEFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL+ L  LE  +I+ E   L+      +S+L         I  E+ ++
Sbjct: 419 LSDIQSQAILDMRLQRLTGLERGKIEEEFAELMKNIAYYESILQDQSILLGIIKDEMLKI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           +E         +RRT   E   A         I  E +TV  ++ G+I+ +   +     
Sbjct: 479 REKHGD-----KRRTEITE---AADEINILDTIPDEEVTVTFTHYGYIKRIPMDTYKAQR 530

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--L 592
                ++++  ++ D ++  L       IL L+  G+ Y L A  +       +      
Sbjct: 531 RGGKGITSMTTRDDDFVEKLLLTTNHSLILFLTNRGRIYRLNAYEIPQSGRIAKGTNIVN 590

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  N+ + +        +   L++ + KG     + SE   +TR G   + +  +++
Sbjct: 591 LIPLEKNEKVTSFISIRDVPAENYLVMCTKKGVIKKTQISEFRKSTRNGLIAISLREDDE 650

Query: 650 MKLVVKVTGDHV-AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  V    G+    +V +    + F   Q+ +M R   GVR            +   +  
Sbjct: 651 LINVKTTDGEQDFIIVTKKGMAISFDEKQVRDMGRAAMGVRAIRLAPDDEVVAMEL-VDP 709

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +  + + Y +  N     L  RGG G    K   ++G  + +
Sbjct: 710 NKQLLVISEKGYGKRTNTKDYRLQTRGGKGVKTYKISEKTGILVGA 755



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 80/227 (35%), Gaps = 14/227 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSL 551
              E +    + +    +  E   V+ + +G I+        KS    L A+  +E D L
Sbjct: 592 IPLEKNEKVTSFISIRDVPAENYLVMCTKKGVIKKTQISEFRKSTRNGLIAISLREDDEL 651

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                       ++++  G A +     +         ++  I L  + ++V   + D  
Sbjct: 652 INVKTTDGEQDFIIVTKKGMAISFDEKQVRDMGRAAMGVR-AIRLAPDDEVVAMELVDPN 710

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGEN 667
            +LLV+S KG        +    TR GK        EK   +     V   + + ++  +
Sbjct: 711 KQLLVISEKGYGKRTNTKDYRLQTRGGKGVKTYKISEKTGILVGAKAVYKDEEIMIINSD 770

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC--FKICEGLTW 711
             L+  S++QI  +SR   GV++    +  +   +       E    
Sbjct: 771 GSLIRMSVNQISILSRVTSGVKVMRTDENSLVVALARIVVPKEDENI 817


>gi|187931170|ref|YP_001891154.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187712079|gb|ACD30376.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 868

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/781 (31%), Positives = 396/781 (50%), Gaps = 48/781 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +ALIDNP ++IE+L+EYI  PDFPTG  I    + I+E+Y+ GRG   +RA+  +
Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYIN-GTDGILEAYKTGRGRVIMRAKADI 248

Query: 259 EEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            E    G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR+EV+ RR+ 
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHRKEVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           F ++    R  IL+GLL++  NIDE+I +I+    P     S                  
Sbjct: 368 FELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGV 427

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                ++LTE Q DAIL LRL  L  LE+ +I +E   L+   +
Sbjct: 428 DVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIK 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            + S+L+  K+    +  E+ E+++ +          +          A     +     
Sbjct: 488 YLISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMD 547

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             V         + K   V  SA   KE DS+   + A T D +L  S+ G+ Y     +
Sbjct: 548 GYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYD 607

Query: 580 LLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIAN 634
                   +   I  ++ L  ++ I        ++    + + +  G    V+ SE    
Sbjct: 608 FPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
              GK  + ++  +++  V    G+  + +  +  K + F    +  M R   GV     
Sbjct: 668 RSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGMRL 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +     +    + +    Y +          KR   G +      R+GK + 
Sbjct: 728 HHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVV 787

Query: 753 S 753
           +
Sbjct: 788 A 788



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 7/181 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S    A+   +GD L          +I++ S  GKA      ++ +      A    
Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSA-AGVTG 724

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVV-SSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEK 649
           + L+HNQ IV+  V +    +++  +  G       SE     R   G   +  S    K
Sbjct: 725 MRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGK 784

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           + +   V  D  + ++ +N  L+  S D++ E  R  +GVRL + ++      +     +
Sbjct: 785 VVVAALVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQD 844

Query: 708 G 708
            
Sbjct: 845 D 845



 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G             +   + +  +     N  +V A + ++   +++++  G     
Sbjct: 750 TENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAALVENDEDIVMITDNGTLVRT 809

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
              E+    R   G   + + + EK+  +  V  D V
Sbjct: 810 SSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDV 846


>gi|118498055|ref|YP_899105.1| DNA gyrase, subunit A [Francisella tularensis subsp. novicida U112]
 gi|194323280|ref|ZP_03057064.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE]
 gi|208779535|ref|ZP_03246880.1| DNA gyrase, A subunit [Francisella novicida FTG]
 gi|254374873|ref|ZP_04990354.1| DNA gyrase [Francisella novicida GA99-3548]
 gi|118423961|gb|ABK90351.1| DNA gyrase, subunit A [Francisella novicida U112]
 gi|151572592|gb|EDN38246.1| DNA gyrase [Francisella novicida GA99-3548]
 gi|194322644|gb|EDX20124.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE]
 gi|208744496|gb|EDZ90795.1| DNA gyrase, A subunit [Francisella novicida FTG]
          Length = 868

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/781 (31%), Positives = 395/781 (50%), Gaps = 48/781 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +ALIDNP ++IE+L+EYI  PDFPTG  I    + I+E+Y+ GRG   +RA+  +
Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYIN-GTDGILEAYKTGRGRVIMRAKADI 248

Query: 259 EEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            E    G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR+EV+ RR+ 
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHRKEVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           F ++    R  IL+GLL++  NIDE+I +I+    P     S                  
Sbjct: 368 FELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGV 427

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                ++LTE Q DAIL LRL  L  LE+ +I +E   L+   +
Sbjct: 428 DVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIK 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            + S+L+   +    +  E+ E+++ +          +          A     +     
Sbjct: 488 YLISILSDINELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMD 547

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             V         + K   V  SA   KE DS+   + A T D +L  S+ G+ Y     +
Sbjct: 548 GYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYD 607

Query: 580 LLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIAN 634
                   +   I  ++ L  ++ I        ++    + + +  G    V+ SE    
Sbjct: 608 FPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
              GK  + ++  +++  V    G+  + +  +  K + F    +  M R   GV     
Sbjct: 668 RSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGMRL 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +     +    + +    Y +          KR   G +      R+GK + 
Sbjct: 728 HHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVV 787

Query: 753 S 753
           +
Sbjct: 788 A 788



 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 7/181 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S    A+   +GD L          +I++ S  GKA      ++ +      A    
Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSA-AGVTG 724

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVV-SSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEK 649
           + L+HNQ IV+  V +    +++  +  G       SE     R   G   +  S    K
Sbjct: 725 MRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGK 784

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           + + V V  D  + ++ +N  L+  S D++ E  R  +GVRL + ++      +     +
Sbjct: 785 VVVAVLVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQD 844

Query: 708 G 708
            
Sbjct: 845 D 845



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G             +   + +  +     N  +V A + ++   +++++  G     
Sbjct: 750 TENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVMITDNGTLVRT 809

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
              E+    R   G   + + + EK+  +  V  D V
Sbjct: 810 SSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDV 846


>gi|28199802|ref|NP_780116.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1]
 gi|182682554|ref|YP_001830714.1| DNA gyrase subunit A [Xylella fastidiosa M23]
 gi|28057923|gb|AAO29765.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1]
 gi|182632664|gb|ACB93440.1| DNA gyrase, A subunit [Xylella fastidiosa M23]
          Length = 893

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/819 (31%), Positives = 394/819 (48%), Gaps = 80/819 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     ++
Sbjct: 4   TAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARI+GEV+GK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGD AAA RYT
Sbjct: 64  FKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM++++  ++  +D++ VDF+  Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP
Sbjct: 124 ESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALIDNPE+ I+ L+EYI GPDFPT G I+     IV  YR GRG  R+
Sbjct: 184 PHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAG-IINGTAGIVAGYRTGRGRVRM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E    G   IVVTEIPYQV K+RLIEKIAEL+  KRI  + ++RDES +D   +
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME+ F +NM  L     PQ++ L  IL+ ++ HRREV+
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALVD-GRPQLLNLKQILQAFIRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P+                  
Sbjct: 362 TRRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGT 421

Query: 420 ------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + LTE QV  IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
                +  +L S       I  E+ +++E +        R +          A     + 
Sbjct: 482 EIIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ K      +A+  KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               L        G  I   I L   + +        Y     +   + +G       SE
Sbjct: 602 SVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATRQGTVKKTPLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    G+  V +   N K + FS + +  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMGRTATGVR 721

Query: 689 LQSYKDGGISDVICFKI----------------------------------CEGLTWIDS 714
                +G     +                                       + L  + +
Sbjct: 722 GIKLTEGEEVVSLIIAEPATGVDMLEEAEETADDDIQTANTAESVHIDPTQDDILCILTA 781

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+G+ +++
Sbjct: 782 TENGYGKCTPLAHYPRKGRGTQGVIGIQTTERNGRLVAA 820



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 44/147 (29%), Gaps = 7/147 (4%)

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST-CKLLVVSSKGNAFIVEESEIIAN 634
           PA  +       E     I   +  + V           +L  +  G       +     
Sbjct: 739 PATGVDMLEEAEETADDDIQTANTAESVHIDPTQDDILCILTATENGYGKCTPLAHYPRK 798

Query: 635 TRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R  +  + +     +   +  V+    D V ++ +   L+     +I  + R  +GV L
Sbjct: 799 GRGTQGVIGIQTTERNGRLVAAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTL 858

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAG 716
               +G     +  ++   L+  D   
Sbjct: 859 IRLSNGEKLQAVE-RLDASLSIPDETE 884


>gi|88800758|ref|ZP_01116316.1| DNA gyrase subunit A [Reinekea sp. MED297]
 gi|88776534|gb|EAR07751.1| DNA gyrase subunit A [Reinekea sp. MED297]
          Length = 881

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/794 (32%), Positives = 410/794 (51%), Gaps = 64/794 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+
Sbjct: 4   IAKEILHVNIEEELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDAAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  ++++ VD+ D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMEKLAHSLLADLEKETVDYVDNYDGTERIPDVLPTRVPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALI+NP++ ++ L+EYI GPDFPTG  I   R+ IVE+YR GRG   +
Sbjct: 184 PHNLGEVIDGTLALIENPDLDVDGLMEYIPGPDFPTGAYIN-GRKGIVEAYRTGRGRIYM 242

Query: 253 RARWC-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA+   V +   G   I+V EIPYQV K+RLIEKIAEL+  K+I  + ++RDES ++   
Sbjct: 243 RAKADVVVDEKTGRESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKEGLR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R    D+L+ +++  + +ET F +N   L     P+V+ L  +L+ ++ HRREV
Sbjct: 303 IAIDLKRGESGDVLLNNLYAQTQLETVFGINAVALVD-GQPKVLNLKEMLEAFIRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------- 420
           + RR+ F ++   +R  IL+GL +A  NIDE+I +IR+                      
Sbjct: 362 VTRRTVFDLRKARQRGHILEGLAVALANIDEMIELIRSSATGAEAKERMLARSWALGDVS 421

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+  Q   IL++RL+ L  LE  ++  E   +
Sbjct: 422 AMLERAGADVCRPEDLEEQFGVRDERYYLSPEQAQQILDMRLQKLTGLEHDKLIGEYKQI 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           + +  +   +LNS ++    I  E+ EVK+ F  +           E+  +      + +
Sbjct: 482 IDDIGEFLRILNSYERLMEVIREELMEVKDEFGDARKT--------EIMTSRLDLSMEDL 533

Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I +E + V IS+ G+          + K      SA   K+ D ++  L A + D IL  
Sbjct: 534 ITEEDMVVTISHSGYAKTQPLTDYEAQKRGGKGRSASALKDDDFIEHLLVASSHDTILCF 593

Query: 567 STDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           ST GK Y L    +        G  +  L+ L   + +        +D    + + ++ G
Sbjct: 594 STFGKVYWLRVFEIPQASRAARGRPMVNLLPLEAEERVTAILPIRNFDPDYFIFMATASG 653

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
                           G   L +   + +  V    G+  V ++ +  K++ F  + +  
Sbjct: 654 TVKKTSLDAFSRPRSSGLIALSLDEGDHLVGVACTDGEREVMLLSDAGKVVRFKEEHVRP 713

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           M R  +GVR  S +DG     +     EG   + ++ R Y +           RG  G +
Sbjct: 714 MGRTARGVRGISLEDGQSVISLIVPQEEGF-VLTASERGYGKRTVMTEFPTKGRGTKGVI 772

Query: 740 VPKGFPRSGKFLSS 753
                 R+GK + +
Sbjct: 773 AMVSNDRNGKLVGA 786



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 71/218 (32%), Gaps = 10/218 (4%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             +   R T    +   D                 +         +  S  L AL   EG
Sbjct: 624 PLEAEERVTAILPIRNFDPDYFIFMATASG----TVKKTSLDAFSRPRSSGLIALSLDEG 679

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L           ++LLS  GK       ++         ++  I L   Q +++  V 
Sbjct: 680 DHLVGVACTDGEREVMLLSDAGKVVRFKEEHVRPMGRTARGVRG-ISLEDGQSVISLIVP 738

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVV 664
                +L  S +G       +E     R  K  + + S ++   +    +V  GD V ++
Sbjct: 739 QEEGFVLTASERGYGKRTVMTEFPTKGRGTKGVIAMVSNDRNGKLVGAKQVFNGDEVMLI 798

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            +   L+   +D+I  + R  +GV+L    D      I
Sbjct: 799 SDQGTLVRTRVDEISSLGRNTQGVKLIRVADDEKLVSI 836


>gi|325496729|gb|EGC94588.1| DNA gyrase subunit A [Escherichia fergusonii ECD227]
          Length = 878

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|320355371|ref|YP_004196710.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032]
 gi|320123873|gb|ADW19419.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032]
          Length = 829

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/768 (32%), Positives = 400/768 (52%), Gaps = 33/768 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  +    +    +++   L + YL YA+S I  RA+PD+RDG KPVHRR + AM E+G
Sbjct: 1   MTEPSIESNQQ-PTIAISRELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRTLFAMRELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
             +   + KSARIVG+VIGK HPHGD + YD+LVR+AQ F  RYPL+ GQGNFG++DGDS
Sbjct: 60  NTYNRPYIKSARIVGDVIGKYHPHGDTAAYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDS 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT++ + ++  +D++ VDF   Y+    EP V PS+ PN+L NG+ GIAV
Sbjct: 120 AAAMRYTEARMTRLDQELVADLDKETVDFVPNYDNSLQEPAVLPSRIPNILINGSEGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP HN+ E+    +AL+DNPEI++ +L+E I GPDFPTGG  +  R  I E+Y  
Sbjct: 180 GMATKIPPHNLTEVINGLIALVDNPEITVHQLMEIITGPDFPTGG-FICGRAGIREAYET 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E+ G     IV+TEIP+Q  K+ L+EKIA L+  KRI  + +IRDES
Sbjct: 239 GRGVIVMRSKTHIEQRGSHGEAIVITEIPFQQNKAALVEKIALLMKEKRITSIAEIRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    +   PD+++  ++ ++ ++  F + +  +     P+++ L  IL+ +L
Sbjct: 299 DRHGVRVVLDLRKDEIPDIVINQLYKMTPLQKSFGIILLCIV-NNKPEILNLKQILQHFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
           AHR+ V++RR++F ++  + R  IL+GL IA  ++DE++ +IR    P         RF 
Sbjct: 358 AHRKTVVYRRTAFELRKAEERAHILEGLKIAITHLDEVVELIRGSANPAEAKEGLILRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q   IL++RL+ L  LE  +I S+ + + A+   +  +L         I  E  ++
Sbjct: 418 LSEIQAQTILDMRLQRLTGLERDKIISDYNEIQAKISWLKQVLADDNLVVQIIREEFEKI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +E +        RRT   +   A    L + +I  E + V +S+ G+I+          +
Sbjct: 478 REEYGD-----DRRTEIID---APDEILPEDLITPEEMVVTVSHTGYIKRNPLTLYRAQR 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +   E D +     A + D  L  +  G+ +      L        G+AI  
Sbjct: 530 RGGKGVKGMVTLEDDFVTSLYTASSLDTFLFFTNKGRVFWRKVYELPLAGRTARGKAIVN 589

Query: 593 LIDLNHNQDIVTAFVY------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           L++L  ++ +            D T  +L V+ +G       SE     RKGK  L +  
Sbjct: 590 LLELGEDEKVAAILPVADLANMDDTVSVLTVTKQGRVKKTFISEYKRPLRKGKFGLTIRD 649

Query: 647 EEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           ++++      +GD  + +V +    + F    +  M R   GV+  +  D      +   
Sbjct: 650 DDEILSAAITSGDDEIFLVTKKGLSIHFHESDVRAMGRLAAGVKGITLGDDDEVVGVAVL 709

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + +      Y +        L  RGG G    K   R+G  + 
Sbjct: 710 KSD-ASILTVTENGYGKRTAVSEYKLQSRGGKGVFTIKTSERNGNVVG 756



 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 6/188 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                   +        L  ++ D +  A      D I L++  G +      ++ +   
Sbjct: 628 KTFISEYKRPLRKGKFGLTIRDDDEILSAAITSGDDEIFLVTKKGLSIHFHESDVRAMGR 687

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              A    I L  + ++V   V  S   +L V+  G       SE    +R GK    + 
Sbjct: 688 LA-AGVKGITLGDDDEVVGVAVLKSDASILTVTENGYGKRTAVSEYKLQSRGGKGVFTIK 746

Query: 646 SEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           + E+   +  V+ V   D V +V  + K++   +D +  + R  +GVRL +  +G +   
Sbjct: 747 TSERNGNVVGVLPVVDEDQVMLVANSGKVIRMPMDTVRIIGRNTQGVRLINLDEGELVVD 806

Query: 701 ICFKICEG 708
           +     E 
Sbjct: 807 MSMLAREE 814


>gi|281601673|gb|ADA74657.1| DNA gyrase subunit A [Shigella flexneri 2002017]
          Length = 875

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|288905329|ref|YP_003430551.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34]
 gi|306831410|ref|ZP_07464569.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325978316|ref|YP_004288032.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732055|emb|CBI13620.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34]
 gi|304426470|gb|EFM29583.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178244|emb|CBZ48288.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 818

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/753 (31%), Positives = 401/753 (53%), Gaps = 15/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGA-LVMGKSGIRKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +     VP+++ L  I+ +++ H++EV
Sbjct: 300 FIIEVRRDASANVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLKQIIVDYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F     ++R  IL+GLL+A  ++DE+I+IIRN +         +SRF L+E Q 
Sbjct: 359 IVRRTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E D+LLA    +  +L   ++    I  E+ ++K  ++ 
Sbjct: 419 QAILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPERVVAIIKEEMDDIKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
                        +   D    +  +I       +    +   R+ K     +      +
Sbjct: 479 PRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVND 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +  ++  G+ Y L    +       +   I  L+ L+  + + T 
Sbjct: 539 DDFVRELVSTSTHDHVYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGEIVQTI 598

Query: 606 FV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                  D+   L  V+ +G     +ESE     + G   L +   +++  V++  G D 
Sbjct: 599 ISQSGHDDNESYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKDGDELINVIRTNGNDD 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +  +    + F+   +  MSR   GVR  + ++G    V   +I +    +    + Y
Sbjct: 659 IIIGTKTGYSVRFNESAVRSMSRSATGVRGVNLREGDEV-VGASRISDDQEVLVITEKGY 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +           RGG G        ++G+   
Sbjct: 718 GKRTLASEYPTKGRGGKGIKTANITEKNGQLAG 750



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 75/211 (35%), Gaps = 12/211 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E         Q    + E     ++ +G ++  K           L AL+ K+GD L 
Sbjct: 589 LDEGEIVQTIISQSGHDDNESYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKDGDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             +  +  D I++ +  G +       + S       ++  ++L    ++V A       
Sbjct: 649 NVIRTNGNDDIIIGTKTGYSVRFNESAVRSMSRSATGVRG-VNLREGDEVVGASRISDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE     R GK     +      ++  +  V GD  + V+ +  
Sbjct: 708 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGQLAGLATVNGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
            ++  ++  I +  R   GV++         
Sbjct: 768 VIIRTNVASISQTGRATLGVKIMRLDQDAKI 798


>gi|78188072|ref|YP_378410.1| DNA gyrase, subunit A [Chlorobium chlorochromatii CaD3]
 gi|78170271|gb|ABB27367.1| DNA gyrase subunit A [Chlorobium chlorochromatii CaD3]
          Length = 828

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 400/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E +  +S+   +   YL Y++S I  RA+PD+RDG KPVHRR++  M E+GL  G  
Sbjct: 1   MQRERIVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSAR+VGEV+GK HPHGD +VYDSLVRL Q F  RYPLI GQGNFG++DGDS AA RY
Sbjct: 61  HKKSARVVGEVLGKFHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +L+ ++++ VDF   +++   EP V PS  PNLL NG SGIAVGMAT++
Sbjct: 121 TEVRMKSIAGEMLKDLEKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNL 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN++E+    +ALI+ PEI I++L++++I PDFPTGG I+   E + ++Y  GRG   
Sbjct: 181 APHNLREVVNGIIALIEQPEIEIQELMKHVIAPDFPTGG-IIYGYEGVRQAYLTGRGKVV 239

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  VE     G   I+VTE+PYQV K RLIEKI EL+  K++  + DIRDES  +  
Sbjct: 240 IRARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  + M+  F +    L    VP+++ L  +++ ++ HR E
Sbjct: 300 RLVIELKRDAVAKVVLNNLYKHTPMQDTFGVINLALVD-GVPKILNLKEMMQYYVKHRNE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           ++ RR+ F + A +RR  IL+GL I   N+DE+I+ IR        +  ++ RF L+E Q
Sbjct: 359 IVLRRTRFDLAAAERRAHILEGLKICLDNLDEVISTIRQSPDTATAQERLIERFGLSEIQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RL+ L  +E  +I +E   +LA  E++  +LNS ++Q   I  E+ +VK+++ 
Sbjct: 419 AKAILEMRLQRLTGMERQKIDTEYIEVLALIEELRFILNSPEKQMEIIREELLKVKDVYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVD 539
                  RRT              + MI +E + + I++ G+I+                
Sbjct: 479 DE-----RRTEIVPQEGD---FSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           ++    K  D ++    A T + IL  +T G+ Y L    +        G ++  +++L 
Sbjct: 531 VTGAQAKNDDFIEHMFIASTHNYILFFTTSGRCYWLKVYEIPEAGRAARGRSLANIMELP 590

Query: 598 HNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I   +    ++    +++ ++ G        E     R G   + +   +++    
Sbjct: 591 PGEKIRTYINIRNFEEPGFIVMATTHGIVKKTALEEFSHPRRTGIAAITIDEGDELLDAR 650

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
              GDH + +   +  ++ F  +++  M R   GV+  +  +      +          +
Sbjct: 651 LTDGDHQIILAKNSGFVVRFPENEVRPMGRTAMGVKGITLDEDEKCIAMVTTRRMDTALL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +        L +RG  G +  K   + G  + 
Sbjct: 711 AVTDNGFGKRSRVEDYRLTRRGARGVITLKPHEKIGALVG 750



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 59/209 (28%), Gaps = 7/209 (3%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
                  +   +   I       ++               ++A+   EGD L  A     
Sbjct: 595 IRTYINIRNFEEPGFIVMATTHGIVKKTALEEFSHPRRTGIAAITIDEGDELLDARLTDG 654

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVS 618
             +I+L    G     P   +         +   I L+ ++  +           LL V+
Sbjct: 655 DHQIILAKNSGFVVRFPENEVRPMGRTAMGV-KGITLDEDEKCIAMVTTRRMDTALLAVT 713

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFS 674
             G        +     R  +  + +   EK   +  ++ V   D + ++  N  +    
Sbjct: 714 DNGFGKRSRVEDYRLTRRGARGVITLKPHEKIGALVGLLDVNDEDDLILITVNGIVNRQH 773

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  I    R   GVRL     G     + 
Sbjct: 774 VSDIRITGRNTSGVRLIRLMQGDSISALA 802


>gi|125718041|ref|YP_001035174.1| DNA gyrase subunit A [Streptococcus sanguinis SK36]
 gi|125497958|gb|ABN44624.1| DNA gyrase A subunit, putative [Streptococcus sanguinis SK36]
          Length = 826

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 394/760 (51%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +      L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPAVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  M R   GVR  + +DG         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMGRIATGVRGVNLRDGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|257866281|ref|ZP_05645934.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30]
 gi|257873203|ref|ZP_05652856.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10]
 gi|257800239|gb|EEV29267.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30]
 gi|257807367|gb|EEV36189.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10]
          Length = 824

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/739 (31%), Positives = 386/739 (52%), Gaps = 15/739 (2%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARIVG+V+GK
Sbjct: 1   MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D VDF+  Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP HN+ E+  A   
Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NPE++  +L+E + GPDFPTGG IV  +  I  +Y  G+G   VR +  V E+  G 
Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGG-IVMGKSGIRRAYETGKGSITVRGKVEVTEMPNGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++    R +   ++
Sbjct: 240 ERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVRRDVSASVI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++ ++ +++ F  NM  +    VP+++ L  IL+ ++ H++EV+ RR+ F     + 
Sbjct: 300 LNNLYKMTALQSSFGFNMLAIEK-GVPKILSLKRILENYIEHQQEVVTRRTQFDKNKAEA 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  +IDEIIA+IR  +       S      L++ Q  AIL++RLR L  L
Sbjct: 359 RAHILEGLRIALDHIDEIIALIRASNSDDEAKNSMMERFKLSDRQAQAILDMRLRRLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+SE   LL     +  +L + ++    I  E++E+ + F               +
Sbjct: 419 ERDKIESEYQGLLEFIADLTDILANPQRVLEIIQTELQELGQRFGDDRRTELLVGEVLSL 478

Query: 503 SRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
              D    ++ +I       +    +   R+ +     +  +   + D +K  +   T D
Sbjct: 479 EDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGGRGVQGMGIHDEDFVKTLVSCSTHD 538

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD----STCKLL 615
            +L  +  GK Y      +       +   +  L+ ++ ++ I               L 
Sbjct: 539 TLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLGIDSSERIEAIISASGGPQEGRYLF 598

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-GENRKLLIFS 674
             +  G       +        G   + +   +++  V++  G+ V ++   +   + F 
Sbjct: 599 FTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFK 658

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
              + +M R   GVR    +DG    V    I E    +      Y +        +  R
Sbjct: 659 EALVRDMGRTAAGVRGIRLRDGDYV-VGAAVITEDSEVLVITENGYGKRTKGSEYPIKGR 717

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           GG G        ++G    
Sbjct: 718 GGKGIKTANITAKNGPLAG 736



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 6/169 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A+  +E D L   +  H  D +++ + DG + T     +        A    I L  
Sbjct: 621 GLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFKEALVRDMGRTA-AGVRGIRLRD 679

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVV 654
              +V A V     ++LV++  G     + SE     R GK      +   +     L  
Sbjct: 680 GDYVVGAAVITEDSEVLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKNGPLAGLTT 739

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
               + + V+ +   L+ F++  + +  R   GVRL   ++      + 
Sbjct: 740 VSGEEDIMVITDKGVLIRFNVATVSQTGRATLGVRLMKMENNAKVVTMA 788


>gi|304413453|ref|ZP_07394926.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1]
 gi|304284296|gb|EFL92689.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1]
          Length = 866

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/809 (32%), Positives = 406/809 (50%), Gaps = 76/809 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G
Sbjct: 1   MSD----LAREITPVNIEAELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 PAAMRYTEIRMAKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ E  LA ID+  IS+E L+ +I GPDFPTG II   R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVIEGCLAYIDDENISVEALMRHIPGPDFPTGAIINGGR-GIAEAYRT 235

Query: 246 GRGGFRVRARWC-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR   V +       I+V EIPYQV K++LIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYLRARAEVVIDAKTQRETIIVHEIPYQVNKAKLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   V+    R    ++++ +++ L+ ++  F +NM  L     P+++PL  IL+ +
Sbjct: 296 SDKDGMRVVIEIKRDAVGEVVLNNLYSLTQLQITFGINMVAL-HAGQPKILPLKEILQSF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           ++HRREV+ RR+ F ++    R  IL+ L++A  +ID II +IR+               
Sbjct: 355 VSHRREVVTRRTMFELRKARDRAHILEALVVALAHIDTIIELIRHAPTAADAKNGLMENA 414

Query: 416 ------------------------------------VMVSRFSLTENQVDAILNLRLRSL 439
                                               +    + LTE Q  AIL+LRL+ L
Sbjct: 415 WPLSDVDEMLKRSSGDQITIGRNEDARPEWLEKEFGIHDESYHLTEQQAQAILDLRLQKL 474

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             +E  ++  E  +LL +  ++ S+L + ++    I  E+  +KE +        RRT  
Sbjct: 475 TGMEHDKLLDEYKDLLIKIVELISILKTPERLMEIIKDELNAIKEQYKDP-----RRTNI 529

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSL 551
              +        + +I +E + V +S++G+          + +      SA   K  D +
Sbjct: 530 IVNNLE---INNEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKGEDFI 586

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV-- 607
              L A+T D IL  S+ G  Y +    L        G  I  L+ L  N+ I       
Sbjct: 587 DQLLVANTHDTILCFSSKGSLYWMKVYQLPEASRGARGRPIINLLPLKENERITAILPVR 646

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            YD+   + + ++ G              + G   + ++  +++  V    G + V +  
Sbjct: 647 EYDAGHHVFMATACGIVKKTALDCFSRPRKDGIIAINLNEGDELIGVALTDGSNEVMLFS 706

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
            + K + FS  ++  + R   G+R     D      +     EG   +      Y +   
Sbjct: 707 TDGKAVRFSESKVRSVGRKAAGMRGIKLNDDDRLVSLIIPQKEGE-ILTITKNGYGKRTL 765

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   R   G L  K   R+G  +++
Sbjct: 766 AEEYPTKGRATKGVLSIKTSERNGNVVAA 794



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 68/184 (36%), Gaps = 7/184 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +     + A++  EGD L        ++ ++L STDGKA       + S      A    
Sbjct: 673 RPRKDGIIAINLNEGDELIGVALTDGSNEVMLFSTDGKAVRFSESKVRSVGRKA-AGMRG 731

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEK 649
           I LN +  +V+  +     ++L ++  G        E     R  K  L +     +   
Sbjct: 732 IKLNDDDRLVSLIIPQKEGEILTITKNGYGKRTLAEEYPTKGRATKGVLSIKTSERNGNV 791

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICE 707
           +  +  +T D + ++ +   L+   + +I    R  +GVRL    K+  +  +      +
Sbjct: 792 VAAIQVMTSDQIMIITDAGTLVRTRVSEINVQGRNTQGVRLIRTAKNEHVVGLQRVAEQD 851

Query: 708 GLTW 711
               
Sbjct: 852 DDIV 855


>gi|300362673|ref|ZP_07058849.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
 gi|300353664|gb|EFJ69536.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
          Length = 829

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/765 (30%), Positives = 393/765 (51%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGG IV  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGG-IVMGRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVV+E+PY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTNIETEKSGRERIVVSELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + ++  F +NM  +     P  + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQLQANFGMNMVAIV-NGAPHFLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII IIR           ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIRIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E  +L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           ++ F        RRT   E      +   + +IE++ + + +++ G+I+ + +       
Sbjct: 479 QKRFGD-----DRRTKIAE--GEAVSIEDEDLIEQKDVLLTLTHNGYIKRMPADEFKVQN 531

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +  ++ D +   + + T D +L  +  GK Y+  A  +     + +   I  
Sbjct: 532 RGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++L+  + I              L  V+  G     + SE     R G   L +   ++
Sbjct: 592 LLELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDE 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+ + +  M R   GVR  + +D     V    +  
Sbjct: 652 LNNVLTTDGKQNILIGTHLGYAVTFNENDVRSMGRTAAGVRGINLRDNDYV-VGSDILEP 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G        ++G    
Sbjct: 711 NSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAG 755



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 8/194 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               L AL  ++GD L   L       IL+ +  G A T    ++ S
Sbjct: 624 TVKRTKVSEFQNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRS 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                 A    I+L  N  +V + + +   ++LV+S KG       SE     R GK   
Sbjct: 684 MGRTA-AGVRGINLRDNDYVVGSDILEPNSEVLVISEKGYGKRTAASEYPVKGRGGKGIK 742

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  V  V GD  + ++     ++ F +D + +  R   GVRL    DG 
Sbjct: 743 TANITEKNGP-LAGVTVVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGA 801

Query: 697 ISDVICFKICEGLT 710
               I         
Sbjct: 802 QVASITAVPKANDE 815


>gi|71275186|ref|ZP_00651473.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon]
 gi|71899824|ref|ZP_00681974.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|170731177|ref|YP_001776610.1| DNA gyrase subunit A [Xylella fastidiosa M12]
 gi|71163995|gb|EAO13710.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon]
 gi|71730415|gb|EAO32496.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|167965970|gb|ACA12980.1| DNA gyrase subunit A [Xylella fastidiosa M12]
          Length = 893

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/819 (31%), Positives = 394/819 (48%), Gaps = 80/819 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     ++
Sbjct: 4   TAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARI+GEV+GK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGD AAA RYT
Sbjct: 64  FKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM++++  ++  +D++ VDF+  Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP
Sbjct: 124 ESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALIDNPE+ ++ L+EYI GPDFPT G I+     IV  YR GRG  R+
Sbjct: 184 PHNLVESINACIALIDNPELDVDGLMEYIPGPDFPTAG-IINGTAGIVAGYRTGRGRVRM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E    G   IVVTEIPYQV K+RLIEKIAEL+  KRI  + ++RDES +D   +
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++  + ME+ F +NM  L     PQ++ L  IL+ ++ HRREV+
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALVD-GRPQLLNLKQILQAFIRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            RR+ F ++    R  +L+GL +A  NIDE+I +I+    P+                  
Sbjct: 362 TRRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGT 421

Query: 420 ------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + LTE QV  IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
                +  +L +       I  E+ +++E +        R +          A     + 
Sbjct: 482 EIIVGLIRILENPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ K      +A+  KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               L        G  I   I L   + +        Y     +   + +G       SE
Sbjct: 602 SVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATRQGTVKKTPLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                 +GK  + +   + +  V    G+  V +   N K + FS + +  M R   GVR
Sbjct: 662 FAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMGRTATGVR 721

Query: 689 LQSYKDGGISDVICFKI----------------------------------CEGLTWIDS 714
                +G     +                                       + L  + +
Sbjct: 722 GIKLTEGEEVVSLIIAEPATGVDMLEEAEETADDDIQTANTADSVHIDPTQDDILCILTA 781

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+G+ +++
Sbjct: 782 TENGYGKCTPLAHYPRKGRGTQGVIGIQTTERNGRLVAA 820



 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 7/147 (4%)

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST-CKLLVVSSKGNAFIVEESEIIAN 634
           PA  +       E     I   +  D V           +L  +  G       +     
Sbjct: 739 PATGVDMLEEAEETADDDIQTANTADSVHIDPTQDDILCILTATENGYGKCTPLAHYPRK 798

Query: 635 TRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R  +  + +     +   +  V+    D V ++ +   L+     +I  + R  +GV L
Sbjct: 799 GRGTQGVIGIQTTERNGRLVAAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTL 858

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAG 716
               +G     +  ++   L+  D   
Sbjct: 859 IRLSNGEKLQAVE-RLDASLSIPDETE 884


>gi|312967532|ref|ZP_07781747.1| DNA gyrase, A subunit [Escherichia coli 2362-75]
 gi|312287729|gb|EFR15634.1| DNA gyrase, A subunit [Escherichia coli 2362-75]
          Length = 875

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ S +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDL 848


>gi|74312751|ref|YP_311170.1| DNA gyrase subunit A [Shigella sonnei Ss046]
 gi|73856228|gb|AAZ88935.1| DNA gyrase subunit A [Shigella sonnei Ss046]
          Length = 875

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|134301444|ref|YP_001121412.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049221|gb|ABO46292.1| DNA gyrase, A subunit [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 868

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/781 (31%), Positives = 397/781 (50%), Gaps = 48/781 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +ALIDNP ++IE+L+EYI+ PDFPTG  I    + I+E+Y+ GRG   +RA+  +
Sbjct: 190 VINGTIALIDNPNLTIEELIEYILAPDFPTGSYIN-GTDGILEAYKTGRGRVIMRAKADI 248

Query: 259 EEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            E    G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR+EV+ RR+ 
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHRKEVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           F ++    R  IL+GLL++  NIDE+I +I+    P     S                  
Sbjct: 368 FELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGV 427

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                ++LTE Q DAIL LRL  L  LE+ +I +E   L+   +
Sbjct: 428 DVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIK 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            + S+L+  K+    +  E+ E+++ +          +          A     +     
Sbjct: 488 YLISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMD 547

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             V         + K   V  SA   KE DS+   + A T D +L  S+ G+ Y     +
Sbjct: 548 GYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYD 607

Query: 580 LLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIAN 634
                   +   I  ++ L  ++ I        ++    + + +  G    V+ SE    
Sbjct: 608 FPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
              GK  + ++  +++  V    G+  + +  +  K + F    +  M R   GV     
Sbjct: 668 RSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGMRL 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +     +    + +    Y +          KR   G +      R+GK + 
Sbjct: 728 HHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVV 787

Query: 753 S 753
           +
Sbjct: 788 A 788



 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 7/181 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S    A+   +GD L          +I++ S  GKA      ++ +      A    
Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSA-AGVTG 724

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVV-SSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEK 649
           + L+HNQ IV+  V +    +++  +  G       SE     R   G   +  S    K
Sbjct: 725 MRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGK 784

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           + + V V  D  + ++ +N  L+  S D++ E  R  +GVRL + ++      +     +
Sbjct: 785 VVVAVLVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQD 844

Query: 708 G 708
            
Sbjct: 845 D 845



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G             +   + +  +     N  +V A + ++   +++++  G     
Sbjct: 750 TENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVMITDNGTLVRT 809

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
              E+    R   G   + + + EK+  +  V  D V
Sbjct: 810 SSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDV 846


>gi|257875898|ref|ZP_05655551.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20]
 gi|257810064|gb|EEV38884.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20]
          Length = 824

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/739 (31%), Positives = 387/739 (52%), Gaps = 15/739 (2%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARIVG+V+GK
Sbjct: 1   MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D VDF+  Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP HN+ E+  A   
Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NPE++  +L+E + GPDFPTGG IV  +  I  +Y  G+G   VR +  V E+  G 
Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGG-IVMGKSGIRRAYETGKGSITVRGKVEVTEMPNGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++    R +   ++
Sbjct: 240 ERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVRRDVSASVI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++ ++ +++ F  NM  +    VP+++ L  IL+ ++ H++EV+ RR+ F     + 
Sbjct: 300 LNNLYKMTALQSSFGFNMLAIEK-GVPKILSLKRILENYIEHQQEVVTRRTQFDKNKAEA 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  +IDEIIA+IR+ +       S      L++ Q  AIL++RLR L  L
Sbjct: 359 RAHILEGLRIALDHIDEIIALIRSSNSDDEAKNSMMERFKLSDRQAQAILDMRLRRLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I++E   LL     +  +L + ++    I  E++E+ + F               +
Sbjct: 419 ERDKIENEYQGLLEFIADLTDILANPQRVLEIIQTELQELGQRFGDDRRTELLVGEVLSL 478

Query: 503 SRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
              D    ++ +I       +    +   R+ +     +  +   + D +K  +   T D
Sbjct: 479 EDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGGRGVQGMGIHDEDFVKTLVSCSTHD 538

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD----STCKLL 615
            +L  +  GK Y      +       +   +  L+ ++ ++ I               L 
Sbjct: 539 TLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLGIDSSERIEAIISASGGPQEGRYLF 598

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-GENRKLLIFS 674
             +  G       +        G   + +   +++  V++  G+ V ++   +   + F 
Sbjct: 599 FTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFK 658

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
              + +M R   GVR    +DG    V    I E    +      Y +        +  R
Sbjct: 659 EALVRDMGRTAAGVRGIRLRDGDYV-VGAAVITEDSEVLVITENGYGKRTKGSEYPIKGR 717

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           GG G        ++G    
Sbjct: 718 GGKGIKTANITAKNGPLAG 736



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 6/169 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A+  +E D L   +  H  D +++ + DG + T     +        A    I L  
Sbjct: 621 GLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFKEALVRDMGRTA-AGVRGIRLRD 679

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVV 654
              +V A V     ++LV++  G     + SE     R GK      +   +     L  
Sbjct: 680 GDYVVGAAVITEDSEVLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKNGPLAGLTT 739

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
               + + V+ +   L+ F++  + +  R   GVRL   ++      + 
Sbjct: 740 VSGEEDIMVITDKGVLIRFNVATVSQTGRATLGVRLMKMENNAKVVTMA 788


>gi|300023036|ref|YP_003755647.1| DNA topoisomerase IV, subunit alpha [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524857|gb|ADJ23326.1| DNA topoisomerase IV, A subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 749

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/746 (56%), Positives = 553/746 (74%), Gaps = 2/746 (0%)

Query: 6   ISNSNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++    L  +  ++ V  R ALEERYLAYALSTI  RA+PD+RDG KPVHRRI++AM E+
Sbjct: 1   MTTKPILPGDGPIEPVEFRTALEERYLAYALSTIMNRALPDVRDGLKPVHRRILYAMREL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L+    + K A+IVGEV+G  HPHG+Q++YD+L RLAQ F  RYPL+ GQGNFGNIDGD
Sbjct: 61  RLNPEGGYIKCAKIVGEVMGDYHPHGNQAIYDALARLAQDFAVRYPLVDGQGNFGNIDGD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           + AA RYTEARMT+ A LIL+G+DED V+FR  Y+    EPVV P+ FPNLLANG SGIA
Sbjct: 121 NPAAERYTEARMTETAALILEGIDEDTVEFRPNYDGRVEEPVVLPAAFPNLLANGASGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HNV E+C A L LI +P  +IEKL+E + GPDFPTGG+IVE R++I+E+Y+
Sbjct: 181 VGMATNIPPHNVDELCAALLHLIKHPNATIEKLVEMVPGPDFPTGGVIVEPRDAILEAYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRGGFRVRARW  E+  RG + IVVTEIPY VQK++L+EKIAEL+  K++P L D+RDE
Sbjct: 241 TGRGGFRVRARWSKEDTARGGYQIVVTEIPYGVQKAKLVEKIAELMSDKKLPFLGDVRDE 300

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SAE++R+VL PK R +DP LLMES+F  S++E R  LNMNVLS G+VP V+ L  +L +W
Sbjct: 301 SAEEIRLVLEPKTRVVDPVLLMESMFRASELEVRVGLNMNVLSAGQVPNVLDLRDVLWQW 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L HR EVL RRS+ R++ I+ R+E+L G LIAYLNIDE+I IIR ED PK  ++++F L+
Sbjct: 361 LEHRIEVLVRRSTHRLKKIEHRLEVLDGYLIAYLNIDEVIRIIRREDDPKAKLIAKFKLS 420

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AILNLRLRSL +LEE +I+SE D L  E+ ++  LL S + QW  ++ E++  +E
Sbjct: 421 DVQAEAILNLRLRSLSRLEEVEIRSEHDKLSKERRELKQLLKSEELQWEHVSNEVKTTRE 480

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +SK T +GRRR+TF +    +        +EKEP+TV++S +GW+R+LK H  DLS L 
Sbjct: 481 AYSKKTAIGRRRSTFADAPEVEVDLATAL-VEKEPVTVILSEKGWVRTLKGHQDDLSKLD 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           FK+GD+LK A+ A TTD+++LL+T+GK +TL A  L  GRGHGE ++L+IDL  N DIV 
Sbjct: 540 FKQGDALKRAIKALTTDKLVLLTTNGKFFTLEANALPGGRGHGEPVRLMIDLEENHDIVE 599

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
            FV+D + KLLV S+ G  FIV E E+IA+TRKGK  L VS  ++ ++ V   GD+VA V
Sbjct: 600 VFVHDPSRKLLVASTAGYGFIVPEEEVIASTRKGKQVLNVSEPDEARVCVPAEGDYVATV 659

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           G+NRKLL+F ID++ EM+RGKGV LQ +KDG +SDV  FK  +GLTW+DSAGR +  +  
Sbjct: 660 GDNRKLLVFKIDEVNEMTRGKGVILQRFKDGSLSDVRVFKKSDGLTWVDSAGREFTLAWG 719

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKF 750
           ++  W+G+R   G +VP+GFPRS  F
Sbjct: 720 EMRDWVGERAQAGRVVPRGFPRSNSF 745


>gi|260448677|gb|ACX39099.1| DNA gyrase, A subunit [Escherichia coli DH1]
 gi|315136863|dbj|BAJ44022.1| DNA gyrase subunit A [Escherichia coli DH1]
 gi|333001821|gb|EGK21387.1| DNA gyrase, A subunit [Shigella flexneri K-218]
          Length = 875

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|167570796|ref|ZP_02363670.1| DNA gyrase subunit A [Burkholderia oklahomensis C6786]
          Length = 850

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/782 (29%), Positives = 371/782 (47%), Gaps = 56/782 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NP+ S+++L+E I  PDFPT G I+     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRATTHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVD-NQPKLLNLKEILQCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNI-------------------------------------------- 400
            R  +L+GL +A  NI                                            
Sbjct: 359 ERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAETENAAA 418

Query: 401 --DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
              E                  + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGREAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  VK  F  +             +          +    
Sbjct: 479 ADLLDILARPERITVMIGEELNAVKVEFGDARRSKIELNATELNTEDLITPQDMVVTMSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ K       A   KE D ++    A+T D IL  S  G+ Y +   
Sbjct: 539 AGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVY 598

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G  I  +  L   + I        + +   + + ++ G            
Sbjct: 599 EVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSADKYVFMTTALGTVKKTPLEAFSR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +KG   + +   + +       G   V +  +  K + F  + +  M R  +GVR   
Sbjct: 659 PMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQ 718

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +G     +     E  + + +    + +           RG  G +  +   R+G+ +
Sbjct: 719 LDEGQQVIAMLVAGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGRVV 778

Query: 752 SS 753
           ++
Sbjct: 779 AA 780



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD L  A        ++L S  GKA      ++         ++ +    
Sbjct: 662 KGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDE 721

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 722 GQQVIAMLVAGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 781

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 782 LVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 824


>gi|256022087|ref|ZP_05435952.1| DNA gyrase subunit A [Escherichia sp. 4_1_40B]
          Length = 875

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|330912061|gb|EGH40571.1| DNA gyrase subunit A [Escherichia coli AA86]
          Length = 875

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ S +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDL 848


>gi|116617180|ref|YP_817551.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096027|gb|ABJ61178.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 848

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/756 (31%), Positives = 387/756 (51%), Gaps = 16/756 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L +  +K  +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G    
Sbjct: 2   SELNDSRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R+ LI G GNFG++DGD AAA 
Sbjct: 62  KPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLIDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++VA  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP+HN+ E+  A   L++NPE +   L+E + GPDFPTGG IV  +  I  +Y  GRG 
Sbjct: 182 NIPTHNLAEVISALHILMNNPEATTADLMEALPGPDFPTGG-IVMGKSGIRRAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA+  +E++  G   IVVTE+PY V K+RLIE+I+EL   K+I  +  IRDES  + 
Sbjct: 241 VTVRAKVDIEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R     +++ +++  + ++T F  NM  +     P+ M L  IL  +LAH+R
Sbjct: 301 LRISIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDH-GAPKTMSLKEILVAYLAHQR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTEN 426
           EV+ RR+ F +Q    R  IL+GL IA  +IDEII IIR+    +       + ++L++ 
Sbjct: 360 EVIRRRTVFELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLINGYALSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +I+ E   L+A    +  +L   ++    I  E+ E++  F
Sbjct: 420 QAQAILDMRLVRLTGLERDKIEEEYQKLVALIADLKDILAHEERVDEIIYNELLEIQTKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHF 545
                   +      +   D    +  ++       +     G  ++       +  ++ 
Sbjct: 480 GDKRRTELQVGDVLSIEDEDLIEEEDVIVTLTNSGYIKRVATGEFKAQNRGGRGVQGMNV 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
            + D +   +   T D +L  +  GK Y +    +       +   +  L++   N+ I 
Sbjct: 540 HDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVNLLNFEGNEKIQ 599

Query: 604 TAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           T         +S   L  V+  G        E       G   L +  ++++  V    G
Sbjct: 600 TVINVRGEAGESNDYLFFVTRLGVVKRTAVKEFANIRTNGLKALTLHDDDEVLSVQITDG 659

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             ++ +   N   + F+ + +  M R   GVR    ++G +  V    + +    +    
Sbjct: 660 TQNIIIATHNGYSVSFAENDVRVMGRSAAGVRGIRLREGDLV-VGSDVLEKDHNVLIITE 718

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + Y +        +  RGG G        ++G    
Sbjct: 719 KGYGKQTPVSEYPIKGRGGKGIKTANITEKNGPLAG 754



 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 74/200 (37%), Gaps = 9/200 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL   + D +        T  I++ + +G + +  A N +   G   A    
Sbjct: 634 NIRTNGLKALTLHDDDEVLSVQITDGTQNIIIATHNGYSVSF-AENDVRVMGRSAAGVRG 692

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V + V +    +L+++ KG       SE     R GK      +   +   
Sbjct: 693 IRLREGDLVVGSDVLEKDHNVLIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKNGP- 751

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  +  V+G + + V      ++ F++D + +  R   GVRL    +G        K+  
Sbjct: 752 LAGMTIVSGQEDIMVTTTQGVMIRFNVDSVSQTGRATLGVRLIRL-EGNAKVATLAKVEH 810

Query: 708 GLTWIDSAGRSYNRSENDLL 727
                D +  + +++  D  
Sbjct: 811 EEVLEDVSRETSDKAPLDEQ 830


>gi|115314422|ref|YP_763145.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           OSU18]
 gi|115129321|gb|ABI82508.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 868

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/781 (31%), Positives = 396/781 (50%), Gaps = 48/781 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +ALIDNP ++IE+L+EYI  PDFPTG  I    + I+E+Y+ GRG   +RA+  +
Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYIN-GTDGILEAYKTGRGRVIMRAKADI 248

Query: 259 EEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            E    G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR+EV+ RR+ 
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHRKEVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           F ++    R  IL+GLL++  NIDE+I +I+    P     S                  
Sbjct: 368 FELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGV 427

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                ++LTE Q DAIL LRL  L  LE+ +I +E   L+   +
Sbjct: 428 DVKMYRKETLASYYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIK 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            + S+L+  K+    +  E+ E+++ +          +          A     +     
Sbjct: 488 YLISILSDIKELICVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMD 547

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             V         + K   V  SA   KE DS+   + A T D +L  S+ G+ Y     +
Sbjct: 548 GYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYD 607

Query: 580 LLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIAN 634
                   +   I  ++ L  ++ I        ++    + + +  G    V+ SE    
Sbjct: 608 FPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
              GK  + ++  +++  V    G+  + +  +  K + F    +  M R   GV     
Sbjct: 668 RSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGMRL 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +     +    + +    Y +          KR   G +      R+GK + 
Sbjct: 728 HHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVV 787

Query: 753 S 753
           +
Sbjct: 788 A 788



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 7/181 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S    A+   +GD L          +I++ S  GKA      ++ +      A    
Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSA-AGVTG 724

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVV-SSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEK 649
           + L+HNQ IV+  V +    +++  +  G       SE     R   G   +  S    K
Sbjct: 725 MRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGK 784

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           + + V V  D  + ++ +N  L+  S D++ E  R  +GVRL + ++      +     +
Sbjct: 785 VVVAVLVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQD 844

Query: 708 G 708
            
Sbjct: 845 D 845



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G             +   + +  +     N  +V A + ++   +++++  G     
Sbjct: 750 TENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVMITDNGTLVRT 809

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
              E+    R   G   + + + EK+  +  V  D V
Sbjct: 810 SSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDV 846


>gi|116628018|ref|YP_820637.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9]
 gi|116101295|gb|ABJ66441.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9]
          Length = 817

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/754 (32%), Positives = 395/754 (52%), Gaps = 16/754 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGG-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +    VP+++ L  IL +++AH++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEK-GVPKILSLRQILADYIAHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+I IIRN           ++RF LTE Q 
Sbjct: 359 VVRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E D+LLA    +  +L   ++    I  E+ E K  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
           +            +   D    +  +I       +    +   RS K     +      +
Sbjct: 479 ARRTELMVGEVVSLEDEDLIEEEDIVITLSNKGYIKRLAQDEFRSQKRGGRGVQGTGVND 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +  ++  G+ Y L    +       +   I  L+ L+  + I T 
Sbjct: 539 DDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETIQTV 598

Query: 606 FVYD-----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                        L+ V+ +G     +E+E     + G   LK+   +++  V    G+ 
Sbjct: 599 INAKSDEASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTNGNE 658

Query: 661 VAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
             ++G      + F  D I  MSR   GV+  + +DG    V    I E    +    + 
Sbjct: 659 EIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGDQV-VGAAAITEDQEVLIITEKG 717

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +        RGG G        ++G    
Sbjct: 718 YGKRTSATEYPTKGRGGKGIKTANITDKNGNLAG 751



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 8/229 (3%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           D G    T       + +     +       V  +     ++++ +   L AL  +EGD 
Sbjct: 590 DEGETIQTVINAKSDEASDNNHLVFVTRQGLVKRTKEAEFKNIRQN--GLIALKLREGDE 647

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L      +  + I++ +  G +       + S      A    + L     +V A     
Sbjct: 648 LINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMSRMA-AGVKGVTLRDGDQVVGAAAITE 706

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++L+++ KG       +E     R GK     +  +K   +  +V V+GD  + V+ +
Sbjct: 707 DQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKNGNLAGIVTVSGDEDIMVITD 766

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
              ++  ++  I +  R  +GV++    D            E +  +  
Sbjct: 767 TGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEIDQVTE 815



 Score = 39.8 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 54/160 (33%), Gaps = 10/160 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
               ++ +  G+    K  ++         +  +  ++GD +  A        +L+++  
Sbjct: 657 NEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGDQVVGAAAITEDQEVLIITEK 716

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G      A    +    G+ I+     + N ++           ++V++  G       +
Sbjct: 717 GYGKRTSATEYPTKGRGGKGIKTANITDKNGNLAGIVTVSGDEDIMVITDTGVIIRTAVA 776

Query: 630 EIIANTR--KGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
            I    R  +G   +++    ++     V  + +  V E+
Sbjct: 777 NISQTGRVTQGVKVMRLDDTARIVTFALVEPEEIDQVTED 816


>gi|241667990|ref|ZP_04755568.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876524|ref|ZP_05249234.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842545|gb|EET20959.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 864

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/781 (31%), Positives = 393/781 (50%), Gaps = 48/781 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +ALIDN +++IE L++YI  PDFPTG  I    + I+E+Y+ GRG   +RA+  +
Sbjct: 190 VINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYIN-GTDGILEAYKTGRGRVIMRAKADI 248

Query: 259 EEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            E    G   IV+TEIPYQV K++L+EKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 249 HEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR+EV+ RR+ 
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHRKEVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           F ++    R  IL+GLL++  NIDE+I +I+    P     S                  
Sbjct: 368 FELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSMLEGV 427

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                ++LTE Q +AIL LRL  L  LE+ +I +E   L+   +
Sbjct: 428 DVKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERIK 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +L+   +    +  E+ E+++ +          +                +     
Sbjct: 488 YLIGILSDVSELIRVVKEELVEIRDNYGDERKSEIIVSRLDLTREDLITEEDMVVTLSMD 547

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             V         + K   V  SA   KE DS+   + A T D +L  S+ G+ Y     +
Sbjct: 548 GYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYD 607

Query: 580 LLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIAN 634
                   +   I  ++ L+ N+ I        +     + + +  G    V+ SE    
Sbjct: 608 FPVASRISKGRPINNILPLDKNERITALMPISEFTEGWYVFMSTKLGRVKKVDLSEFARP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
              GK  + ++  +++  V    G+  + +  +  K + F    +  M R   GV     
Sbjct: 668 RSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGMRL 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            D      +     +    + +    Y +          KR   G +      R+GK + 
Sbjct: 728 HDNQKIVSVIVTNPDEGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVV 787

Query: 753 S 753
           +
Sbjct: 788 A 788



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 106/352 (30%), Gaps = 23/352 (6%)

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            +  E        R+      +   + +++            +               + 
Sbjct: 513 NYGDERKSEIIVSRLDLTREDLITEEDMVVTLSMDG--YVKTQPLSMYNAQKRGGVGKSA 570

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            +     ++    L    +  +       +   +  D  + S   +   I   +      
Sbjct: 571 TKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFPVASRISKGRPINNILPL---- 626

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
                +         E +      +   +   + + +           +  S    A+  
Sbjct: 627 --DKNERITALMPISEFTEGWYVFMSTKLGRVKKVDL-------SEFARPRSTGKIAIGL 677

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            +GD L          +I++ S  GKA      ++ +      A    + L+ NQ IV+ 
Sbjct: 678 NDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSA-AGVTGMRLHDNQKIVSV 736

Query: 606 FVYDSTCKLLVV-SSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKMKLVVKVTGD-H 660
            V +    +++  +  G       SE     R   G   +  S    K+ + V V  D  
Sbjct: 737 IVTNPDEGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVDNDED 796

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLT 710
           + ++ +N  L+  S DQ+ E  R  +GVRL + + +  +  +   K  +  T
Sbjct: 797 IVMITDNGTLVRTSSDQVRECGRSAQGVRLINLRNNEKLISLKVVKQEDEET 848


>gi|325103800|ref|YP_004273454.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145]
 gi|324972648|gb|ADY51632.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145]
          Length = 859

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/769 (31%), Positives = 406/769 (52%), Gaps = 21/769 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +   N +  +E+ +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ 
Sbjct: 1   MAEET-DNQSENIEDRIIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYG 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  +GL      KKSAR+VGEV+GK HPHGD SVYD++VR+AQP+  RY LI GQGNFG+
Sbjct: 60  MQGLGLQSNKPHKKSARVVGEVLGKYHPHGDSSVYDTMVRMAQPWSLRYMLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR+ ++AE +L  +++D VDFR  +++   EP V P++ PNLL NG+
Sbjct: 120 IDGDGAAAMRYTEARLRKIAEEMLIDINKDTVDFRLNFDDSLEEPTVLPARIPNLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+I  HN+ E+ +A +A ID+ EI+I+ L++++  PDFPTGG I+   E + 
Sbjct: 180 SGIAVGMATNIAPHNLSEVIDATIAYIDDKEIAIQDLMKHVKAPDFPTGG-IIYGYEGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E++  GRG   +RA+  +E        I+VTEIPYQV K+++IE+ AEL+  K+I  + +
Sbjct: 239 EAFETGRGRIVMRAKAEIESQSNEREKIIVTEIPYQVNKAQMIERTAELVNEKKIEGISE 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  D   +++   R  +  +++ +++  + ++T F +N   L     P ++ L  +
Sbjct: 299 IRDESDRDGLRIVYEIKRDANAAIVLNNLYKYTALQTSFSVNNIALVH-GRPMLLNLKDM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           +  ++ HR EV+ RR+ F +   ++R  IL+GLLIA  ++DE+I++IRN   P       
Sbjct: 358 IVHFVDHRHEVVVRRTKFELAEAEKRAHILEGLLIALDHLDEVISLIRNSSTPDEAREGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +S+F L++ Q  AIL++ LR L  LE  +IK E  +L+ + E + S+L     + + I  
Sbjct: 418 MSKFGLSDIQARAILDMTLRRLTGLERDKIKEEYADLMKQIEYLKSVLADESLRMSIIKE 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ EVKE +          +    ++          +       +  +     R+     
Sbjct: 478 ELVEVKEAYGDERRTEIVHSAAELMTEDFIEDENVVITISHEGYIKRTPLTEYRTQGRGG 537

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID 595
                 + ++ D ++    A   + +L  +  GK Y L    +  G    +  AIQ +I+
Sbjct: 538 KGAIGSNSRDEDFIEHIFVASNHNYLLFFTDQGKCYWLRVFEIPEGSRTSKGRAIQNIIN 597

Query: 596 LNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           ++  + I             Y     +++ + KG                G   + ++  
Sbjct: 598 IDKEEKIKAYIKVVNLKDQEYLENNFIIMCTKKGTIKKTTLEAYSRPRSNGINAININEG 657

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICF 703
           +++      TG+  + +   + + + F+   +  M R   GVR  S       +  +I  
Sbjct: 658 DELLEASLTTGNSEIVMALRSGRAIRFNESTVRPMGRTATGVRGISLAHDKDEVVGMISI 717

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              E  T +  + + Y +  +     +  RGG G        ++G+ ++
Sbjct: 718 DSPES-TVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINITDKTGQLVA 765



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S  ++A++  EGD L  A        I++    G+A       +         ++ +
Sbjct: 643 RPRSNGINAININEGDELLEASLTTGNSEIVMALRSGRAIRFNESTVRPMGRTATGVRGI 702

Query: 594 IDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK--- 649
              +   ++V     D     +LVVS KG     +  +     R GK    ++  +K   
Sbjct: 703 SLAHDKDEVVGMISIDSPESTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINITDKTGQ 762

Query: 650 MKLVV-KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
           +  +      D + ++  +  ++  ++D +  M R  +GVRL + K+      +
Sbjct: 763 LVAIKSVTDNDDLMIINRSGIVIRIAMDTLRVMGRATQGVRLITLKESDEIASV 816


>gi|310825641|ref|YP_003957998.1| DNA gyrase subunit A [Eubacterium limosum KIST612]
 gi|308737375|gb|ADO35035.1| DNA gyrase subunit A [Eubacterium limosum KIST612]
          Length = 834

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/761 (32%), Positives = 410/761 (53%), Gaps = 19/761 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              +  + +K V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+  
Sbjct: 2   DEIIEYDRIKEVNIEEEMKSCYVDYAMSVIIGRALPDVRDGLKPVHRRILYAMSELGMTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               +KSARIVGEV+GK HPHGD +VYD++VR+AQ F  RY  I GQGNFG+IDGD AAA
Sbjct: 62  DKPTRKSARIVGEVLGKYHPHGDTAVYDAMVRMAQEFSTRYMTIYGQGNFGSIDGDGAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+M+++A  +L+ +++D VDF   ++E + EP V P++ P+LL NG++GIAVGMA
Sbjct: 122 MRYTEAKMSKIALEMLRDINKDTVDFIPNFDESEMEPEVLPARVPHLLVNGSAGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  +A IDNP+I+I++L+ +I GPDFPT GI++  +  I E+YR GRG
Sbjct: 182 TNIPPHNLGEVVDGTIAYIDNPDITIDELMVHIKGPDFPTAGILL-GKSGIKEAYRTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
             ++R++  +E   +G   IVVTEIPY V KS+L+EKIAEL+  KR+  + D+RDE+  +
Sbjct: 241 RIKIRSKVEMETTKKGRKQIVVTEIPYMVNKSKLVEKIAELVKEKRVEGIADLRDETDLK 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS------MGRVPQVMPLDGIL 361
               ++    R  +  +++  ++  + ++  F + M  L           P+V+ L  +L
Sbjct: 301 KGIRIVIELKRDANETIILNQLYKHTQLQDTFGVIMLALVGNEYDKKKLEPKVLNLKQVL 360

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMV 418
             ++ H++E++ RR+ F ++  + R  IL+GL IA  NIDE+IA+IR     K     ++
Sbjct: 361 HYYVEHQKEIITRRTIFDLKKAEARAHILEGLRIALDNIDEVIALIRAAKDGKEAKVQLM 420

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RF+LTE Q  AIL++RL+ L  LE  +I+ E   L     +  ++L   +   N I  E
Sbjct: 421 ERFALTEIQAQAILDMRLQRLTGLEREKIEEEYAELQKMIAEYKAILADEQLVLNIIKDE 480

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+KE +                        +  +       V   +    RS K    
Sbjct: 481 LTEIKEKYGDERRTSFDIDVEDFDVEDLIEEEEVVITMTHIGYVKRISADTYRSQKRGGK 540

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            ++AL  +E D ++      T   +L  S  GK Y L A  +        G AI  ++ L
Sbjct: 541 GITALSTRENDFVEHLFTTTTHHFLLFFSNKGKVYRLKAFEVPEGGRTARGTAIVNILQL 600

Query: 597 NHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           + ++ I T            L++ + +G     + +E  ++ + G   + +   +++  V
Sbjct: 601 DPDEKITTMIPVKEFTADKCLIMATKQGIIKKTDLTEYDSSRKNGIIGINLREGDELINV 660

Query: 654 VKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
             V   + + +  +    + F+  ++  + R   GVR    +D  +   +   + + L  
Sbjct: 661 RLVEENEDIVMGTQKGYAIRFTSKEVRPLKRTSIGVRGIELRDDDVVVGMDI-VSDDLFV 719

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +   Y +  +       KRGG G    K   ++G+ + 
Sbjct: 720 LCVSDNGYGKLTSGDQYRSQKRGGKGVQTYKVTKKTGELVG 760



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 5/120 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I+L  +  +V   +      +L VS  G   +    +  +  R GK      +   + E 
Sbjct: 699 IELRDDDVVVGMDIVSDDLFVLCVSDNGYGKLTSGDQYRSQKRGGKGVQTYKVTKKTGEL 758

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +   V      + ++     ++    + I  + R  +GVRL   + G     I     E 
Sbjct: 759 VGFCVISRDGEIMMINNQGVVIKLEGNDISTVGRNTQGVRLMKLQAGEQIATISKVYKED 818



 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 67/183 (36%), Gaps = 10/183 (5%)

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
              D  R+        R     +   ++E+    V+ + +G+            K  S+ 
Sbjct: 636 TEYDSSRKNGIIGINLREGDELINVRLVEENEDIVMGTQKGYAIRFTSKEVRPLKRTSIG 695

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           +  +  ++ D +           +L +S +G           S +  G+ +Q        
Sbjct: 696 VRGIELRDDDVVVGMDIVSDDLFVLCVSDNGYGKLTSGDQYRSQKRGGKGVQTYKVTKKT 755

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
            ++V   V     ++++++++G    +E ++I    R   G   +K+ + E++  + KV 
Sbjct: 756 GELVGFCVISRDGEIMMINNQGVVIKLEGNDISTVGRNTQGVRLMKLQAGEQIATISKVY 815

Query: 658 GDH 660
            + 
Sbjct: 816 KED 818


>gi|300071040|gb|ADJ60440.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 829

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/752 (32%), Positives = 385/752 (51%), Gaps = 14/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G      
Sbjct: 1   MQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA RY
Sbjct: 61  HKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   L++NPE S+  L+  I GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGA-LVMGKSGIRRAYETGKGSIT 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  +   
Sbjct: 240 LRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R L   +++ ++F L+ ++T F  NM  +    +P+++ L  IL +++ H+ EV
Sbjct: 300 VVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEK-GIPKILSLKEILVDYIEHQIEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQV 428
           + RR++F     + R  IL+GL IA  NID II IIR          +      L+E Q 
Sbjct: 359 VERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDILAKPERVKKIIREELEEVKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
                        +   D    +  +I       +        R+       +  +   +
Sbjct: 479 KRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRGVQGMGMSD 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +L  +  G+ Y +    +       +   I  L+ L+  + I T 
Sbjct: 539 DDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLDDGEKIATI 598

Query: 606 FVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
              D       L   +  G       S+       G   LK+   +++  V++ +G D V
Sbjct: 599 INVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDEV 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +       + F    + +M R   GV+  + ++G    V   +I +    +  +     
Sbjct: 659 IIGTHLGYSVRFKGAIVRDMGRAAAGVKGVNLREGDFV-VGTSRIDDNQEVLVISENGLG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +           RGG G  V     R+GK   
Sbjct: 718 KRTQASEYPTKGRGGKGMKVMNVTERTGKLAG 749



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 72/190 (37%), Gaps = 8/190 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++      +     +  L AL  ++GD L   L     D +++ +  G +       +  
Sbjct: 618 IVKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRD 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--T 640
                 A    ++L     +V     D   ++LV+S  G     + SE     R GK   
Sbjct: 678 MGRAA-AGVKGVNLREGDFVVGTSRIDDNQEVLVISENGLGKRTQASEYPTKGRGGKGMK 736

Query: 641 FLKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
            + V+    K+  +  V GD  + V+ +   ++  ++  I +  R  +GV++        
Sbjct: 737 VMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRL--DDE 794

Query: 698 SDVICFKICE 707
           + ++ F + +
Sbjct: 795 AQIVTFALVD 804


>gi|294651105|ref|ZP_06728441.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822999|gb|EFF81866.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 910

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/826 (30%), Positives = 408/826 (49%), Gaps = 94/826 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM ++   IL  +++D VD+ D Y+  +  P V P++ PNLL NGT+GIAVGMAT++
Sbjct: 121 TEVRMQKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  +NP IS+E L+E+I GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYANNPNISVEGLMEHITGPDFPTGG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K++ IE+IAEL+  K++  + ++RDES ++  
Sbjct: 240 IRGKYHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F+ + ++  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVVVNNLFLHTQLQNSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ F ++    R  IL+GL +A  NIDEII  I+    P                 
Sbjct: 359 VVTRRTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLQAGEWAGGGV 418

Query: 420 -------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV AIL LRL  L  LE+ ++ 
Sbjct: 419 VALLEKAGAISVRPDEIEGEDPARPFGLTDDVYRLSPTQVAAILELRLHRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN      N I  E+  + + +        RRT   E   +   
Sbjct: 479 AEYTEILGQIAELTAILNDFNLLMNVIREELALILQQYGD-----GRRTEIVE---SGVD 530

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+         ++ +      SA   K+ D ++  + A   
Sbjct: 531 FCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATAMKDDDIIQHLIVASNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             +L  +  GK Y L    +       +   I  L+ L+ N+ +        +     + 
Sbjct: 591 ATVLCFTDVGKVYRLRVFEVPQASRGAKGRPIINLLPLDANETVTAILPLTEFPENHYVF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + ++ G    VE ++       G   ++++ E+ +  V    G+  + +     K + F+
Sbjct: 651 MATASGTVKRVELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFA 710

Query: 675 IDQIPEMSR-GKGVRLQS--YKDGGISD------------------------VICFKICE 707
              +  M R  KGVR           S+                        V    + E
Sbjct: 711 ETDVRAMGRTAKGVRGMRVTLAAAVDSEDADLDNDDSDDNDDSSDSNVLSRIVSLVVVPE 770

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 771 TGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 816



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT 657
            IV+  V   T ++L  S+ G       ++     R GK  + + + E   ++   V + 
Sbjct: 761 RIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSID 820

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFK 704
               + ++ +   L+     ++    R  +GVRL    D   +  V+   
Sbjct: 821 ETKELMLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSDAETLVGVVSID 870


>gi|89255940|ref|YP_513302.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           LVS]
 gi|156501933|ref|YP_001427998.1| DNA gyrase subunit A [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009155|ref|ZP_02274086.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367295|ref|ZP_04983322.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica
           257]
 gi|254368771|ref|ZP_04984784.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022]
 gi|290954615|ref|ZP_06559236.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295311958|ref|ZP_06802782.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143771|emb|CAJ78973.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           LVS]
 gi|134253112|gb|EBA52206.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica
           257]
 gi|156252536|gb|ABU61042.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121692|gb|EDO65862.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022]
          Length = 868

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/781 (31%), Positives = 396/781 (50%), Gaps = 48/781 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +ALIDNP ++IE+L+EYI  PDFPTG  I    + I+E+Y+ GRG   +RA+  +
Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYIN-GTDGILEAYKTGRGRVIMRAKADI 248

Query: 259 EEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            E    G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR+EV+ RR+ 
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHRKEVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           F ++    R  IL+GLL++  NIDE+I +I+    P     S                  
Sbjct: 368 FELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGV 427

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                ++LTE Q DAIL LRL  L  LE+ +I +E   L+   +
Sbjct: 428 DVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIK 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            + S+L+  K+    +  E+ E+++ +          +          A     +     
Sbjct: 488 YLISILSDIKELICVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMD 547

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             V         + K   V  SA   KE DS+   + A T D +L  S+ G+ Y     +
Sbjct: 548 GYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYD 607

Query: 580 LLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIAN 634
                   +   I  ++ L  ++ I        ++    + + +  G    V+ SE    
Sbjct: 608 FPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
              GK  + ++  +++  V    G+  + +  +  K + F    +  M R   GV     
Sbjct: 668 RSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGMRL 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +     +    + +    Y +          KR   G +      R+GK + 
Sbjct: 728 HHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVV 787

Query: 753 S 753
           +
Sbjct: 788 A 788



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 7/181 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S    A+   +GD L          +I++ S  GKA      ++ +      A    
Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSA-AGVTG 724

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVV-SSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEK 649
           + L+HNQ IV+  V +    +++  +  G       SE     R   G   +  S    K
Sbjct: 725 MRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGK 784

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           + + V V  D  + ++ +N  L+  S D++ E  R  +GVRL + ++      +     +
Sbjct: 785 VVVAVLVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQD 844

Query: 708 G 708
            
Sbjct: 845 D 845



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G             +   + +  +     N  +V A + ++   +++++  G     
Sbjct: 750 TENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVMITDNGTLVRT 809

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
              E+    R   G   + + + EK+  +  V  D V
Sbjct: 810 SSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDV 846


>gi|118578454|ref|YP_899704.1| DNA gyrase subunit A [Pelobacter propionicus DSM 2379]
 gi|118501164|gb|ABK97646.1| DNA gyrase subunit A [Pelobacter propionicus DSM 2379]
          Length = 843

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/774 (31%), Positives = 392/774 (50%), Gaps = 37/774 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             +N  AV++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM +M  D+   +
Sbjct: 4   TPQNKIAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMSNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD + YD++VR+AQ F  RY L+ GQGNFG+IDGD  AA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDRPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+ Q++  +L  +D++ V     YN+E  EP V PSKFPNLL NG++GIAVGMAT+IP
Sbjct: 124 EIRLRQLSHELLADLDKETVGMAPNYNDELLEPTVLPSKFPNLLINGSTGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +A+I+NP+++ E+LL  I GPDFPTG  I   R+ I ++Y  GRG  ++
Sbjct: 184 PHNLGEVIDGIIAVINNPDLAHEELLALIPGPDFPTGATIY-GRQGIRDAYTTGRGIIQI 242

Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA+  +E         I+VTE+PYQV K+RLIEKIAEL+  K+I  + +IRDES  +   
Sbjct: 243 RAKAHIEAAKKSERQSIIVTELPYQVNKARLIEKIAELVKEKKIEGIAEIRDESDREGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++L+  ++ L+ M+T F + +  +   R P+++ L  ++  ++ HR EV
Sbjct: 303 IVVEVKRDDNPEVLLNLLYKLTQMQTSFGIILLAIVHNR-PRILSLREMIDCFIEHRAEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------- 415
           + RR++F ++    R  IL+GL IA   +D +I +IR+   P                  
Sbjct: 362 VTRRTNFELKKALARAHILEGLKIALDWLDAVIELIRSSKTPPEAKQGLMEGAFADAEFL 421

Query: 416 ---------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           L+E Q  AIL +RL+ L  LE  +I SE + ++    ++  +L 
Sbjct: 422 ARLELPRPVGYDDGVHLSEIQAQAILEMRLQRLTGLERDKILSEYEEIMKLIARLREILA 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S ++ +N I  E+ E+++ F          TT            +  +       +  S 
Sbjct: 482 SDREIFNIIISELTEIRDKFGDIRRSEISDTTPDISLEDTIMDEEMVVTISHTGYIKRSA 541

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
               RS +      + +  +E D ++    A T D +L  +  G+ Y L    +   +  
Sbjct: 542 VDLYRSQRRGGKGKTGMKTREEDFVEQLFIASTKDYLLCFTDAGRMYWLKVYEIPEGNRT 601

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+A+  L+++   + I T      +     L + +  G        E       G   
Sbjct: 602 TKGKAVVNLVNVGMEEKITTILPVKEFSEHTFLFMATRNGVVKKTPLIEYSNVRSGGIIA 661

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           + +   +K+  V    G   V +   N K + FS   +  M R  +GVR  +  +     
Sbjct: 662 VNLDDGDKLIGVALTDGTKDVFLASRNGKAIRFSEQDVRSMGRVTRGVRGMNLNEDDHVI 721

Query: 700 VICFKICE--GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +     +  G T        Y +  +        RGG G +  K   R+G  +
Sbjct: 722 GMEIVHNDVVGSTIFTVCENGYGKRTDLDEYRDQSRGGKGIITIKTNARNGSVV 775



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 49/117 (41%), Gaps = 8/117 (6%)

Query: 594 IDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
           ++LN +  ++   +  +      +  V   G     +  E    +R GK  + + +  + 
Sbjct: 712 MNLNEDDHVIGMEIVHNDVVGSTIFTVCENGYGKRTDLDEYRDQSRGGKGIITIKTNARN 771

Query: 650 --MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  V++V+ D  + V+ +N K+L   +     + R  +GVRL + ++      + 
Sbjct: 772 GSVVNVMQVSNDNDLMVITDNGKILRVPVSGFSVIGRNTQGVRLITTEEKEKVVAVA 828


>gi|167627420|ref|YP_001677920.1| DNA topoisomerase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167597421|gb|ABZ87419.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 864

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/781 (31%), Positives = 393/781 (50%), Gaps = 48/781 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +ALIDN +++IE L++YI  PDFPTG  I    + I+E+Y+ GRG   +RA+  +
Sbjct: 190 VINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYIN-GTDGILEAYKTGRGRVIMRAKVDI 248

Query: 259 EEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            E    G   IV+TEIPYQV K++L+EKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 249 HEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR+EV+ RR+ 
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHRKEVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           F ++    R  IL+GLL++  NIDE+I +I+    P     S                  
Sbjct: 368 FELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSMLEGV 427

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                ++LTE Q +AIL LRL  L  LE+ +I +E   L+   +
Sbjct: 428 DVKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERIK 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +L+   +    +  E+ E+++ +          +                +     
Sbjct: 488 YLIGILSDVSELIRVVKEELVEIRDNYGDERKSEIIVSRLDLTREDLITEEDMVVTLSMD 547

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             V         + K   V  SA   KE DS+   + A T D +L  S+ G+ Y     +
Sbjct: 548 GYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYD 607

Query: 580 LLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIAN 634
                   +   I  ++ L+ N+ I        +     + + +  G    V+ SE    
Sbjct: 608 FPVASRISKGRPINNILPLDKNERITALMPISEFTEGWYVFMSTKLGRVKKVDLSEFARP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
              GK  + ++  +++  V    G+  + +  +  K + F    +  M R   GV     
Sbjct: 668 RSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGMRL 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            D      +     +    + +    Y +          KR   G +      R+GK + 
Sbjct: 728 HDNQKIVSVIVTNPDEGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVV 787

Query: 753 S 753
           +
Sbjct: 788 A 788



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 46/351 (13%), Positives = 103/351 (29%), Gaps = 22/351 (6%)

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            +  E        R+      +   + +++            +               + 
Sbjct: 513 NYGDERKSEIIVSRLDLTREDLITEEDMVVTLSMDG--YVKTQPLSMYNAQKRGGVGKSA 570

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            +     ++    L    +  +       +   +  D  + S   +   I   +      
Sbjct: 571 TKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFPVASRISKGRPINNILPL---- 626

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
                +         E +      +   +   + + +           +  S    A+  
Sbjct: 627 --DKNERITALMPISEFTEGWYVFMSTKLGRVKKVDL-------SEFARPRSTGKIAIGL 677

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            +GD L          +I++ S  GKA      ++ +      A    + L+ NQ IV+ 
Sbjct: 678 NDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSA-AGVTGMRLHDNQKIVSV 736

Query: 606 FVYDSTCKLLVV-SSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKMKLVVKVTGD-H 660
            V +    +++  +  G       SE     R   G   +  S    K+ + V V  D  
Sbjct: 737 IVTNPDEGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVDNDED 796

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           + ++ +N  L+  S DQ+ E  R  +GVRL + ++      +     E   
Sbjct: 797 IVMITDNGTLVRTSSDQVRECGRSAQGVRLINLRNNEKLISLKVVKQEDEE 847


>gi|288926995|ref|ZP_06420890.1| DNA gyrase, A subunit [Prevotella buccae D17]
 gi|288336241|gb|EFC74627.1| DNA gyrase, A subunit [Prevotella buccae D17]
          Length = 881

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/772 (29%), Positives = 389/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENLTIDHDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E ++  +++D VD  + +++  +EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNPEI +E L+ YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNMPTHNLGEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIY-GIQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E       IV+TEIPY V K++LIE IAEL+   +I  + +  DES
Sbjct: 240 GRGRVVMRAKAEI-ESDESHDKIVITEIPYGVNKAQLIEYIAELVKEGKIDGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVIDVKRDANANVILNKLFKMTALQSAFSVNNIALV-NGRPRLLSLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P     +   RF+
Sbjct: 358 EHRHDVTIRRTKYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERFN 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L    +  + +LN  +     +  E++EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRILNDPELCKQVMKDELQEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE +        RRT   E+  + +    +     +P+ + +S+ G+I+           
Sbjct: 478 KEKYGDP-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFREQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       +E D  +    A     +L  +  G+ Y L    +  G  + +  AIQ 
Sbjct: 530 RGGVGSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L+++  +  +             + ++  ++  +  G                G   + +
Sbjct: 590 LLNIEGDDQVNAFLRLRGLDDEEFINSHYVVFATKNGTVKKTLLEAYSRPRANGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG--ISDV 700
              +++  V    G + + +   N + + F    I  M R   GVR     +G   +  +
Sbjct: 650 VEGDEVVDVRLTNGNNELIIANRNGRAVRFHESTIRTMGRVSTGVRGMRLDEGDDAVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I     E    +  +   Y +        +  RGG G        ++G+ ++
Sbjct: 710 IVVNDSETENVMVVSENGYGKRSQVEDYRITNRGGKGVKTLSVTEKTGRLVA 761



 Score = 84.1 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 52/460 (11%), Positives = 140/460 (30%), Gaps = 28/460 (6%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPK--NRSLDPDLLMESIFMLSDMETRFPLN 342
           K       +R  +LE +         +V   +      D    +E  F L +++++  ++
Sbjct: 369 KYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERFNLDELQSKAIVD 428

Query: 343 MNVLSMGRVP--QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           M +  +  +   Q+      L+  + +   +L      +    D   E+ +         
Sbjct: 429 MRLSQLTGLRMDQLHAEYEELERMIDYYNRILNDPELCKQVMKDELQEVKEKYGDPRRTE 488

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDA---ILNLRLRSLRKLEEYQIKSELDNLLAE 457
            +  +   N +   P      +++         +   R ++   +     +    +    
Sbjct: 489 IKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFREQARGGVGSKGARHREQDFTEY 548

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                                ++  +         GR       +   D+      +   
Sbjct: 549 IYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKGRAIQNLLNIEGDDQVNAFLRLRGL 608

Query: 518 EPITVVISNRGWIRSLKSHSV-------------DLSALHFKEGDSLKIALHAHTTDRIL 564
           +    + S+     +                    + A++  EGD +      +  + ++
Sbjct: 609 DDEEFINSHYVVFATKNGTVKKTLLEAYSRPRANGVIAINIVEGDEVVDVRLTNGNNELI 668

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGN 622
           + + +G+A       + +       ++ +     +  +V   V +   T  ++VVS  G 
Sbjct: 669 IANRNGRAVRFHESTIRTMGRVSTGVRGMRLDEGDDAVVGMIVVNDSETENVMVVSENGY 728

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
               +  +     R GK    +S  E   ++  +  VT D  + ++ ++  ++  ++   
Sbjct: 729 GKRSQVEDYRITNRGGKGVKTLSVTEKTGRLVAIKNVTDDNDLMIINKSGVVIRLAVADC 788

Query: 679 PEMSRG-KGVRLQSY-KDGGISDVICFKICEGLTWIDSAG 716
             M R  +GVRL +  K   +   +C  +   L       
Sbjct: 789 RVMGRATQGVRLINLAKKNDVIASVCKVMSSELEATVEEE 828


>gi|227529857|ref|ZP_03959906.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350226|gb|EEJ40517.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 839

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/757 (30%), Positives = 387/757 (51%), Gaps = 16/757 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N L    +  V+L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+  
Sbjct: 3   ENDLSNNRITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG+IDGDS AA
Sbjct: 63  DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSIDGDSPAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+M+++A  +L+ ++++ VDF+D Y+  + EP V P++FPNLL NG SGIAVGMA
Sbjct: 123 MRYTEAKMSKIAVEMLRDINKNTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP+HN+ E+  A   L+DNP+ + E L++ + GPDFPTGG +V  +  I ++Y  GRG
Sbjct: 183 TNIPTHNLGEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGG-VVMGKSGIRKAYETGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +EE   G   IVV EIPY V K++LIE+IA+L   K I  + D+ DE+  +
Sbjct: 242 TIVVRAKVDIEERKNGRQQIVVHEIPYMVNKAKLIERIADLARNKEIEGITDVNDETDRE 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R    ++++ +++ ++ M+T F  NM  +     P+++ L  IL+ +L H+
Sbjct: 302 GMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIV-NGAPKILSLKEILQYYLEHQ 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTE 425
             V+ RR+ F ++  + R  I+ GL IA  +IDEII IIRN       K  ++  + L++
Sbjct: 361 ENVVRRRTEFDLKKAENRAHIVAGLRIALDHIDEIINIIRNSQTSEIAKNQLMENYGLSD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  LE  +I++E   L+A       +L   ++    I  E+ E+++ 
Sbjct: 421 RQAQAILDMRLVRLTGLEREKIEAEYKKLMAAIADYKDILAHQERINQIIYDELLEIQKK 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALH 544
           F        +      +   D    +  ++       +        +S       +  + 
Sbjct: 481 FGDKRRTELQVGDITNIEDEDLIEEESIIVTLTHNGYIKRLPVDEFKSQHRGGRGVKGMG 540

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDI 602
             + D ++  + + T D +L  +  GK Y++    +        G  I  L+ +++ + I
Sbjct: 541 VHKDDFIEQLISSDTHDLLLFFTNSGKVYSMKGYEIPEYGRSAQGIPIINLLGIDNKEKI 600

Query: 603 VTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                      D    L   + +G       +E       G   + +   +++  V  V 
Sbjct: 601 SAVINVSHETNDDDKFLFFTTKQGTVKRTPVTEFKNIRSNGLKAINLHDNDELIHVDIVK 660

Query: 658 GDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
                ++   +   L F+   +  M R   GVR    +D     +    + +    +  +
Sbjct: 661 DQQNMIIGTHHGYALSFNSSVVRSMGRSAAGVRGIRLRDDDYV-IGTAPLDDDSNVLVIS 719

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +        +  RGG+G        ++G  + 
Sbjct: 720 ELGYGKQTPASEYPIKGRGGLGVKTVNVTKKNGPLVG 756



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  L A++  + D L           +++ +  G A +  +  + S      A    
Sbjct: 636 NIRSNGLKAINLHDNDELIHVDIVKDQQNMIIGTHHGYALSFNSSVVRSMGRSA-AGVRG 694

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKM 650
           I L  +  ++     D    +LV+S  G       SE     R G     V        +
Sbjct: 695 IRLRDDDYVIGTAPLDDDSNVLVISELGYGKQTPASEYPIKGRGGLGVKTVNVTKKNGPL 754

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             +  V GD  + +V ++  ++ F ++ + +  R   GV L    +G     I 
Sbjct: 755 VGLTTVKGDEDIMLVTDHGVIIRFGVETVSQTGRSALGVHLIKMDNGTHVATIA 808


>gi|325694462|gb|EGD36371.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK150]
          Length = 826

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/760 (32%), Positives = 395/760 (51%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYLDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A    +DNPE +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLFMDNPEATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + +DG         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|41642|emb|CAA40461.1| DNA gyrase subunit A [Escherichia coli K-12]
          Length = 875

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I  PDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPEPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|262373151|ref|ZP_06066430.1| DNA gyrase, A subunit [Acinetobacter junii SH205]
 gi|262313176|gb|EEY94261.1| DNA gyrase, A subunit [Acinetobacter junii SH205]
          Length = 910

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/827 (29%), Positives = 407/827 (49%), Gaps = 95/827 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM ++   IL  +++D VD+ D Y+  +  P V P++ PNLL NGT+GIAVGMAT++
Sbjct: 121 TEVRMQKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  +NP ISIE L+E+I GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYANNPNISIEGLMEHITGPDFPTGG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K++ IE+IAEL+  K++  + ++RDES ++  
Sbjct: 240 IRGKYHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F+ + ++  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVIVNNLFLHTQLQNSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ + ++    R  IL+GL +A  NID II  I+    P                 
Sbjct: 359 VVTRRTMYELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGV 418

Query: 420 -------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV+AIL LRL  L  LE+ ++ 
Sbjct: 419 VALLEKAGAISVRPDEIEGEDPARPFGLSGEIYRLSPTQVNAILELRLHRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN      N I  E+  + + +  +     RRT   E   +   
Sbjct: 479 AEYTEILGQIAELTAILNDFNLLMNVIREELALILQQYGDA-----RRTEIVE---SGVD 530

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+         ++ +      SA   K+ D ++  + A   
Sbjct: 531 FCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             +L  +  GK Y L    +       +   +  L+ L  N+ I        +     + 
Sbjct: 591 ATVLCFTNVGKVYRLRVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFPENHYVF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFS 674
           + ++ G    VE  +       G   ++++ E+ +  V    G+  + +     K + F+
Sbjct: 651 MATASGTVKRVELEQFSNVRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFA 710

Query: 675 IDQIPEMSR-GKGVRLQSYK--------DGGISD-------------------VICFKIC 706
              +  M R  KGVR             +    +                   V    + 
Sbjct: 711 ETDVRAMGRTAKGVRGMRVSFASNTIDVEDAEVENDDSDDNDDSSDSNVVSRIVSLVVVP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    + +    Y +          KRGG G +  K   R+G+ +S+
Sbjct: 771 ETGEVLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELISA 817



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 6/135 (4%)

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +   +        +      D N    IV+  V   T ++L   + G        +    
Sbjct: 736 IDVEDAEVENDDSDDNDDSSDSNVVSRIVSLVVVPETGEVLCACANGYGKRTPVDDFPTK 795

Query: 635 TRKGKTFLKVSSEE---KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R GK  + + + E   ++   V +     + ++ +   L+     ++    R  +GVRL
Sbjct: 796 KRGGKGVIAIKTSERNGELISAVSIDETKELMLISDGGTLVRTRAAEVATTGRNAQGVRL 855

Query: 690 QSYKDGG-ISDVICF 703
               D   +  V+  
Sbjct: 856 IRLSDAETLVGVVSI 870


>gi|55823197|ref|YP_141638.1| DNA gyrase subunit A [Streptococcus thermophilus CNRZ1066]
 gi|55739182|gb|AAV62823.1| DNA gyrase A subunit [Streptococcus thermophilus CNRZ1066]
 gi|312278614|gb|ADQ63271.1| DNA gyrase A subunit [Streptococcus thermophilus ND03]
          Length = 811

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/754 (32%), Positives = 395/754 (52%), Gaps = 16/754 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGG-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +    VP+++ L  IL +++AH++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEK-GVPKILSLRQILADYIAHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+I IIRN           ++RF LTE Q 
Sbjct: 359 VVRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E D+LLA    +  +L   ++    I  E+ E K  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
           +            +   D    +  +I       +    +   RS K     +      +
Sbjct: 479 ARRTELMVGEVVSLEDEDLIEEEDIVITLSNKGYIKRLAQDEFRSQKRGGRGVQGTGVND 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +  ++  G+ Y L    +       +   I  L+ L+  + I T 
Sbjct: 539 DDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETIQTV 598

Query: 606 FVYD-----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                        L+ V+ +G     +E+E     + G   LK+   +++  V    G+ 
Sbjct: 599 INAKSDEASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTNGNE 658

Query: 661 VAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
             ++G      + F  D I  MSR   GV+  + +DG    V    I E    +    + 
Sbjct: 659 EIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGDQV-VGAAAITEDQEVLIITEKG 717

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +        RGG G        ++G    
Sbjct: 718 YGKRTSATEYPTKGRGGKGIKTANITDKNGNLAG 751



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 79/225 (35%), Gaps = 8/225 (3%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           D G    T       + +     +       V  +     ++++ +   L AL  +EGD 
Sbjct: 590 DEGETIQTVINAKSDEASDNNHLVFVTRQGLVKRTKEAEFKNIRQN--GLIALKLREGDE 647

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L      +  + I++ +  G +       + S      A    + L     +V A     
Sbjct: 648 LINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMSRMA-AGVKGVTLRDGDQVVGAAAITE 706

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++L+++ KG       +E     R GK     +  +K   +  +V V+GD  + V+ +
Sbjct: 707 DQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKNGNLAGIVTVSGDEDIMVITD 766

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
              ++  ++  I +  R  +GV++    D            E + 
Sbjct: 767 TGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEID 811


>gi|15802778|ref|NP_288805.1| DNA gyrase subunit A [Escherichia coli O157:H7 EDL933]
 gi|12516566|gb|AAG57360.1|AE005455_1 DNA gyrase, subunit A, type II topoisomerase [Escherichia coli
           O157:H7 str. EDL933]
          Length = 875

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/793 (32%), Positives = 392/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE  +E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGXMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G    +V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETXIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|315608754|ref|ZP_07883732.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae
           ATCC 33574]
 gi|315249604|gb|EFU29615.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae
           ATCC 33574]
          Length = 881

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/772 (29%), Positives = 389/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENLTIDHDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E ++  +++D VD  + +++  +EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNPEI +E L+ YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNMPTHNLGEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIY-GIQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E       IV+TEIPY V K++LIE IAEL+   +I  + +  DES
Sbjct: 240 GRGRVVMRAKAEI-ESDESHDKIVITEIPYGVNKAQLIEYIAELVKDGKIDGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVIDVKRDANANVILNKLFKMTALQSAFSVNNIALV-NGRPRLLSLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P     +   RF+
Sbjct: 358 EHRHDVTIRRTKYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERFN 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L    +  + +LN  +     +  E++EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRILNDPELCKQVMKDELQEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE +        RRT   E+  + +    +     +P+ + +S+ G+I+           
Sbjct: 478 KEKYGDP-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFREQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       +E D  +    A     +L  +  G+ Y L    +  G  + +  AIQ 
Sbjct: 530 RGGVGSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L+++  +  +             + ++  ++  +  G                G   + +
Sbjct: 590 LLNIEGDDQVNAFLRLRGLDDEEFINSHYVVFATKNGTVKKTLLEAYSRPRANGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG--ISDV 700
              +++  V    G + + +   N + + F    I  M R   GVR     +G   +  +
Sbjct: 650 VEGDEVVDVRLTNGNNELIIANRNGRAVRFHESTIRTMGRVSTGVRGMRLDEGDDAVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I     E    +  +   Y +        +  RGG G        ++G+ ++
Sbjct: 710 IVVNDSETENVMVVSENGYGKRSQVEDYRITNRGGKGVKTLAVTEKTGRLVA 761



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 50/460 (10%), Positives = 138/460 (30%), Gaps = 28/460 (6%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPK--NRSLDPDLLMESIFMLSDMETRFPLN 342
           K       +R  +LE +         +V   +      D    +E  F L +++++  ++
Sbjct: 369 KYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERFNLDELQSKAIVD 428

Query: 343 MNVLSMGRVP--QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           M +  +  +   Q+      L+  + +   +L      +    D   E+ +         
Sbjct: 429 MRLSQLTGLRMDQLHAEYEELERMIDYYNRILNDPELCKQVMKDELQEVKEKYGDPRRTE 488

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDA---ILNLRLRSLRKLEEYQIKSELDNLLAE 457
            +  +   N +   P      +++         +   R ++   +     +    +    
Sbjct: 489 IKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFREQARGGVGSKGARHREQDFTEY 548

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                                ++  +         GR       +   D+      +   
Sbjct: 549 IYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKGRAIQNLLNIEGDDQVNAFLRLRGL 608

Query: 518 EPITVVISNRGWIRSLKSHSV-------------DLSALHFKEGDSLKIALHAHTTDRIL 564
           +    + S+     +                    + A++  EGD +      +  + ++
Sbjct: 609 DDEEFINSHYVVFATKNGTVKKTLLEAYSRPRANGVIAINIVEGDEVVDVRLTNGNNELI 668

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGN 622
           + + +G+A       + +       ++ +     +  +V   V +   T  ++VVS  G 
Sbjct: 669 IANRNGRAVRFHESTIRTMGRVSTGVRGMRLDEGDDAVVGMIVVNDSETENVMVVSENGY 728

Query: 623 AFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
               +  +     R GK    +       ++  +  VT D  + ++ ++  ++  ++   
Sbjct: 729 GKRSQVEDYRITNRGGKGVKTLAVTEKTGRLVAIKNVTDDNDLMIINKSGVVIRLAVADC 788

Query: 679 PEMSRG-KGVRLQSY-KDGGISDVICFKICEGLTWIDSAG 716
             M R  +GVRL +  K   +   +C  +   L       
Sbjct: 789 RVMGRATQGVRLINLAKKNDVIASVCKVMSSELEATVEEE 828


>gi|239831581|ref|ZP_04679910.1| DNA topoisomerase IV, A subunit [Ochrobactrum intermedium LMG 3301]
 gi|239823848|gb|EEQ95416.1| DNA topoisomerase IV, A subunit [Ochrobactrum intermedium LMG 3301]
          Length = 787

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/764 (59%), Positives = 588/764 (76%), Gaps = 22/764 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+ 
Sbjct: 24  PPDDGEEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNP 83

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA
Sbjct: 84  DQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAA 143

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMA
Sbjct: 144 MRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMA 203

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDF 226
           T+IP HNV E+C +AL LI++PE  +E+L+                        + GPDF
Sbjct: 204 TNIPPHNVAELCSSALYLINHPEAPVEELVTSPEQWEELKREAETDPAALLKCKVRGPDF 263

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PTGGI+VE   +I+++YR GRG FRVRARW  EE  RG+W IV+TEIPYQVQKSRLIEKI
Sbjct: 264 PTGGILVEEHGNILDAYRTGRGAFRVRARWEKEEGNRGTWVIVITEIPYQVQKSRLIEKI 323

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           AEL++AK++PLL+D+RDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVL
Sbjct: 324 AELLLAKKLPLLDDVRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVL 383

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
           S G+VP V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL GLLIAYLN+DE+I I
Sbjct: 384 SHGKVPNVLSLGAVLREWLDHRKEVLVRRSQFRLAEIERRLEILGGLLIAYLNLDEVIRI 443

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L  EK  ++ LL 
Sbjct: 444 IREEDEPKQDLMRTFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTVEKTDLEGLLA 503

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           SG +QW +I+ EI+ V+E F   T+LG RRTTF +    D   + QAMIE+EP+T+V+S 
Sbjct: 504 SGTRQWKKISAEIKSVREKFGPKTELGARRTTFADAPTHDLEDIHQAMIEREPVTIVVSE 563

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGH
Sbjct: 564 KGWLRAMKGHLADFSTLAFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGH 623

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE I++L+D+ ++QDI+TAFV+D   KLL+VS +GN FIV ESE +ANTRKGK  + V +
Sbjct: 624 GEPIRILVDMENDQDILTAFVHDPAAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKA 683

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC 706
            ++ KL  +V+GDH+AVVGENRK+++F +  IPEM+RGKGVRLQ YKDGG+SDV  F I 
Sbjct: 684 PDEAKLCQRVSGDHIAVVGENRKMVVFPLSDIPEMTRGKGVRLQKYKDGGVSDVRTFAIA 743

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           EGL+W DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 744 EGLSWQDSAERTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 787


>gi|313889353|ref|ZP_07823001.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122185|gb|EFR45276.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026]
          Length = 836

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/760 (31%), Positives = 400/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++PE +   L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLGESIDAVKMVMEHPECTTRDLMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIELTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +     VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKLTSLQTNFSF-NMLAIENGVPKILTLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  ++DE+IAIIRN           +SRF L+E Q 
Sbjct: 359 ITRRTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRNSQTDIIAQGELMSRFQLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+A    +  +L    +    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLIALIADLADILAKPDRISAIIIQEMDEIKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE E + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTEL--MVGEVLSLEDEDLIEVEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                 + D +K  +   T D +L  +  G+ Y L A  +       +   I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G       SE     + G   L +   +++  V+
Sbjct: 592 EETIQTIINARKEDIDNKFFFFTTRQGLVKRTNASEFGNIRQNGLRALNLKDGDELINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G + + +  ++   + F    I  M R   GVR    +DG +  +   +I +    +
Sbjct: 652 LTDGSEDIIIGTKSGYSVRFEEASIRNMGRSATGVRGVKLRDGDLV-IGASRISDSQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G+   
Sbjct: 711 VITEKGYGKRTRATEYPTKGRGGKGIKTANITAKNGQLAG 750



 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 5/121 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           + L     ++ A     + ++LV++ KG       +E     R GK      +   + + 
Sbjct: 689 VKLRDGDLVIGASRISDSQEVLVITEKGYGKRTRATEYPTKGRGGKGIKTANITAKNGQL 748

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             LV     + + ++     ++  SI  + +  R   GV++                 E 
Sbjct: 749 AGLVTVTGHEDIMIITNKGVIIRTSIADVSQTGRSTMGVKVMRLDQDSKIVTFALVDPEA 808

Query: 709 L 709
            
Sbjct: 809 E 809


>gi|15673093|ref|NP_267267.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403]
 gi|12724070|gb|AAK05209.1|AE006343_5 DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403]
          Length = 829

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/752 (32%), Positives = 385/752 (51%), Gaps = 14/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G      
Sbjct: 1   MQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA RY
Sbjct: 61  HKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   L++NPE S+  L+  I GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGA-LVMGKSGIRRAYETGKGSIT 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  +   
Sbjct: 240 LRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R L   +++ ++F L+ ++T F  NM  +    +P+++ L  IL +++ H+ EV
Sbjct: 300 VVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEK-GIPKILSLKEILVDYIEHQIEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQV 428
           + RR++F     + R  IL+GL IA  NID II IIR          +      L+E Q 
Sbjct: 359 VERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIEAEYQDLVALIADLADILAKPERVKKIIREELEEVKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
                        +   D    +  +I       +        R+       +  +   +
Sbjct: 479 KRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRGVQGMGMSD 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +L  +  G+ Y +    +       +   I  L+ L+  + I T 
Sbjct: 539 DDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLDDGEKIATI 598

Query: 606 FVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
              D       L   +  G       S+       G   LK+   +++  V++ +G D V
Sbjct: 599 INVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDEV 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +       + F    + +M R   GV+  + ++G    V   +I +    +  +     
Sbjct: 659 IIGTHLGYSVRFKGAVVRDMGRAAAGVKGVNLREGDYV-VGTSRIDDSQEVLVISENGLG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +           RGG G  V     R+GK   
Sbjct: 718 KRTQASEYPTKGRGGKGMKVMNVTERTGKLAG 749



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 73/190 (38%), Gaps = 8/190 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++      +     +  L AL  ++GD L   L     D +++ +  G +       +  
Sbjct: 618 IVKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRD 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--T 640
                 A    ++L     +V     D + ++LV+S  G     + SE     R GK   
Sbjct: 678 MGRAA-AGVKGVNLREGDYVVGTSRIDDSQEVLVISENGLGKRTQASEYPTKGRGGKGMK 736

Query: 641 FLKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
            + V+    K+  +  V GD  + V+ +   ++  ++  I +  R  +GV++        
Sbjct: 737 VMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRL--DDE 794

Query: 698 SDVICFKICE 707
           + ++ F + +
Sbjct: 795 AQIVTFALVD 804


>gi|323351532|ref|ZP_08087186.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis VMC66]
 gi|322122018|gb|EFX93744.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis VMC66]
          Length = 826

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   I+VTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + ++G         I EG   +
Sbjct: 659 LTDGTADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLREGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|282852321|ref|ZP_06261663.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1]
 gi|282556063|gb|EFB61683.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1]
          Length = 829

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 393/765 (51%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGG IV  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGG-IVMGRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVV+E+PY V KS L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTNIETEKNGRERIVVSELPYLVNKSELVKKIADLAREKIIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +     P  + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIV-NGAPHFLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII IIR           ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E  +L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           ++ F        RRT   E      +   + +IE++ + + +++ G+I+ + +       
Sbjct: 479 QKRFGD-----DRRTKIAE--GEAVSIEDEDLIEQKDVLLTLTHNGYIKRMPADEFKVQN 531

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +  ++ D +   + + T D +L  +  GK Y+  A  +     + +   I  
Sbjct: 532 RGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++L+  + I              L  V+  G     + SE     R G   L +   ++
Sbjct: 592 LLELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDE 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+ + +  M R   GVR  + +D     V    +  
Sbjct: 652 LNNVLTTDGKQNILIGTHLGYAVTFNENDVRSMGRTAAGVRGINLRDNDYV-VGSDILEP 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G        ++G    
Sbjct: 711 DSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAG 755



 Score = 90.6 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 67/193 (34%), Gaps = 6/193 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               L AL  ++GD L   L       IL+ +  G A T    ++ S
Sbjct: 624 TVKRTKVSEFQNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRS 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 A    I+L  N  +V + + +   ++LV+S KG       SE     R GK   
Sbjct: 684 MGRTA-AGVRGINLRDNDYVVGSDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIK 742

Query: 643 KVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
             +       +  V  V GD  + ++     ++ F +D + +  R   GVRL    DG  
Sbjct: 743 TANITEKNGPLAGVTVVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQ 802

Query: 698 SDVICFKICEGLT 710
              I         
Sbjct: 803 VASITAVPKANDE 815


>gi|227889152|ref|ZP_04006957.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|227850381|gb|EEJ60467.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
          Length = 829

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/765 (30%), Positives = 390/765 (50%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGG IV  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGG-IVMGRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVVTE+PY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIIVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +     P  + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIV-NGAPHFLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII IIR           ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E  +L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLKAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           ++ F        RRT   E      +   + +IE++ + + +++ G+I+ + +       
Sbjct: 479 QKRFGD-----DRRTKIAE--GEAVSIEDEDLIEQKDVLLTLTHNGYIKRMSADEFKVQN 531

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +  ++ D +   + + T D +L  +  GK Y+  A  +     + +   I  
Sbjct: 532 RGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++L+  + I              L  V+  G     + SE     R G   L +   ++
Sbjct: 592 LLELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDE 651

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       + F+   +  M R   GVR  + +D     V    +  
Sbjct: 652 LNNVLTTDGKQNIIIGTHLGYAVTFNEKDVRSMGRTAAGVRGINLRDNDYV-VGSDILEP 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G        ++G    
Sbjct: 711 DSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAG 755



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 8/190 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               L AL  ++GD L   L       I++ +  G A T    ++ S
Sbjct: 624 TVKRTKVSEFQNIRRSGLIALTLRDGDELNNVLTTDGKQNIIIGTHLGYAVTFNEKDVRS 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                 A    I+L  N  +V + + +   ++LV+S KG       SE     R GK   
Sbjct: 684 MGRTA-AGVRGINLRDNDYVVGSDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIK 742

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +   +   +  V  V GD  + ++     ++ F +D + +  R   GVRL    DG 
Sbjct: 743 TANITEKNGP-LAGVTVVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGA 801

Query: 697 ISDVICFKIC 706
               I     
Sbjct: 802 QVASITAVPK 811


>gi|167766859|ref|ZP_02438912.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1]
 gi|167711407|gb|EDS21986.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1]
 gi|291558399|emb|CBL37199.1| DNA gyrase subunit A [butyrate-producing bacterium SSC/2]
          Length = 827

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/768 (31%), Positives = 393/768 (51%), Gaps = 35/768 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + NT+  + V  + L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+   
Sbjct: 2   DENTIF-DKVHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNG 60

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AA
Sbjct: 61  PDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAA 120

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+++++  +L  ++++ VDFR  ++E + EP V PS+FPNLL NGT GIAVGM
Sbjct: 121 AMRYTEARLSKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGM 180

Query: 188 ATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           AT+IP HN++E+  A + +IDN      E +IE+LLE I GPDFPTG  I+  R  I ++
Sbjct: 181 ATNIPPHNLREVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATIL-GRSGIDQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  +VRA   +E +  G   I+VTE+PY V K+RLIEKIA L+  K++  + ++R
Sbjct: 240 YRTGRGKIKVRAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      +     R  + ++++  ++  + ++  F + M  L     P+ M L  +L 
Sbjct: 300 DESDRSGMRICIELRRDANANVILNQLYKHTQLQDTFGVIMLALVD-GQPKTMNLHEMLD 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VS 419
            +L H+++V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR  +  +      + 
Sbjct: 359 YYLTHQKDVVTRRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKLELME 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L++ Q  AI+++RLR+L  LE  +++ E   L+    ++ ++L   K+    I  EI
Sbjct: 419 RFGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELMERIGELKAILADEKKLLGVIKDEI 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------ 533
             +++ +        RRT              + +I +E   + ++  G+I+ +      
Sbjct: 479 ALIRDKYGDE-----RRTQI---GFDVDDISMEDLIPRENTVITMTKLGYIKRMTVDNFK 530

Query: 534 --KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--A 589
                   +  +   + D ++      T   I+  +  G+ Y L A  +          A
Sbjct: 531 SQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLKAYEIPESGRTARGSA 590

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  L+ L   + I        Y+    LL+ +  G        E     + G   + +  
Sbjct: 591 IVNLLQLQPGEKITAVIPLVDYEEGKYLLMATKYGVVKKSSIMEYANIRKTGLAAITLKD 650

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           ++++  V     D  V +V +N + + F    +  + R   GVR  +   G    +    
Sbjct: 651 DDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRCIGRTSMGVRGINL-TGDDEVIGMQL 709

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +G   +  +     +           RGG G    K   ++G  + 
Sbjct: 710 DSQGEALLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITEKTGDVVG 757



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 71/194 (36%), Gaps = 8/194 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+     +         L+A+  K+ D L    +    + + L++ +G+       ++  
Sbjct: 626 VVKKSSIMEYANIRKTGLAAITLKDDDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRC 685

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                  ++  I+L  + +++   +      LL+VS+ G       SE     R GK   
Sbjct: 686 IGRTSMGVRG-INLTGDDEVIGMQLDSQGEALLIVSANGMGKRTLTSEFTTQHRGGKGIK 744

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              +   + + +  V  V  D  + ++     ++  ++D I  + R   GV++ +  +  
Sbjct: 745 CYKITEKTGD-VVGVKAVNDDNEIMMITTEGIIIRTAVDSISILGRNTSGVKVMNVGENV 803

Query: 697 ISDVICFKICEGLT 710
               I     E L 
Sbjct: 804 EVASIAKVREEKLE 817


>gi|152996872|ref|YP_001341707.1| DNA gyrase subunit A [Marinomonas sp. MWYL1]
 gi|150837796|gb|ABR71772.1| DNA gyrase, A subunit [Marinomonas sp. MWYL1]
          Length = 896

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/813 (30%), Positives = 408/813 (50%), Gaps = 83/813 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +
Sbjct: 4   LAKEIIPVSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYT
Sbjct: 64  KKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM +++  +L  ++++ VDF   Y+  +  P V P++ P LL NG++GIAVGMAT+IP
Sbjct: 124 EIRMAKISHHLLMDLEKETVDFVPNYDGTEFMPEVLPARVPGLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI +  LA+IDN +I+I++L+++I GPDFPTG   +  R  I+E+Y+ GRG   +
Sbjct: 184 PHNLGEIIDGCLAVIDNADITIDELIDHIPGPDFPTGA-FINGRAGIIEAYKTGRGRIYM 242

Query: 253 RARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR   E++       IV TEIPYQ+ K+++IEKIAEL+  K++  + ++RDES +D   
Sbjct: 243 RARHHFEDMEKGNRQSIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +PD+++ +IF  + +++ F +NM  L     PQ++ +  IL+ ++ HRREV
Sbjct: 303 IVIELRRGENPDVVVNNIFTQTQLQSVFGINMVALVD-GRPQLLNIKQILECFVKHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------- 420
           + RR+ F ++    R  IL+GL ++  NID +I +IR                       
Sbjct: 362 VTRRTIFELRKARERGHILEGLAVSLANIDRVIELIRTSPTSAEAKEKIVSESWEPGDVV 421

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+ +Q  AIL+LRL  L  LE  ++  E   L
Sbjct: 422 AMLERAGADACRPDDLEAGYGFVDGAYHLSPDQAQAILDLRLHRLTGLEHDKLLGEYKTL 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +    ++ ++L++  +    I  E++EVKE F  +     RRT       + +      +
Sbjct: 482 IELIGELLNILSNPDRLMEVIREELQEVKETFGDA-----RRTEIL---TSRQDLTIADL 533

Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++ P+ V ISN G+         ++ +      S+   K+ D ++  L   + D I+L 
Sbjct: 534 IDEAPMVVTISNTGYAKSQPLVEYQAQRRGGRGKSSASMKDEDHIEHLLVTSSHDTIMLF 593

Query: 567 STDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV----------------- 607
           S  GK Y L    +       +   I  L+ L   + I                      
Sbjct: 594 SNFGKVYWLRVFEIPVASRSAKGRPIVNLLPLREGESISALLPLPVVEAVEADSEADDDV 653

Query: 608 -----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                 +++  + + ++ G                G   L +   +++  V    G+  +
Sbjct: 654 SDDAIVEASSYIFMATANGTVKKTAMQHFARPRSTGLIALSLDETDELVGVSVTNGENDI 713

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V  + K + F    +  M R   GVR     +     V      +G   + +    Y 
Sbjct: 714 MLVSSSGKTIRFKESDVRAMGRTAAGVRGIRLGEDAKV-VSLIVPQDGSAVLMACENGYG 772

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +        +  RGG G +  +   R+G  + +
Sbjct: 773 KRTLVEDFPVYGRGGQGVIGIQVSERNGPVVGA 805



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 8/188 (4%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +     TV  +        +  S  L AL   E D L      +  + I+L+S+ GK  
Sbjct: 666 FMATANGTVKKTAMQHFARPR--STGLIALSLDETDELVGVSVTNGENDIMLVSSSGKTI 723

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                ++ +      A    I L  +  +V+  V      +L+    G        +   
Sbjct: 724 RFKESDVRAMGRTA-AGVRGIRLGEDAKVVSLIVPQDGSAVLMACENGYGKRTLVEDFPV 782

Query: 634 NTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
             R G+  + +     +   +        D + ++ +   L+   + ++    R  +GV 
Sbjct: 783 YGRGGQGVIGIQVSERNGPVVGAAQVDETDEIILITDQGTLVRTRVTEVSCQGRNTQGVT 842

Query: 689 LQSYKDGG 696
           L    +  
Sbjct: 843 LIRLTNDE 850


>gi|55821284|ref|YP_139726.1| DNA gyrase subunit A [Streptococcus thermophilus LMG 18311]
 gi|55737269|gb|AAV60911.1| DNA gyrase A subunit [Streptococcus thermophilus LMG 18311]
          Length = 811

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/754 (32%), Positives = 395/754 (52%), Gaps = 16/754 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGG-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +    VP+++ L  IL +++AH++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEK-GVPKILSLRQILADYIAHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+I IIRN           ++RF LTE Q 
Sbjct: 359 VVRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E D+L+A    +  +L   ++    I  E+ E K  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYDDLIALITDLADILAKPERVIAIIKEELDESKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
           +            +   D    +  +I       +    +   RS K     +      +
Sbjct: 479 ARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRGVQGTGVND 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +  ++  G+ Y L    +       +   I  L+ L+  + I T 
Sbjct: 539 DDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETIQTV 598

Query: 606 FVYD-----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                        L+ V+ +G     +E+E     + G   LK+   +++  V    G+ 
Sbjct: 599 INAKSDEASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTNGNE 658

Query: 661 VAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
             ++G      + F  D I  MSR   GV+  + +DG    V    I E    +    + 
Sbjct: 659 EIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGDQV-VGAAAITEDQEVLIITEKG 717

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +        RGG G        ++G    
Sbjct: 718 YGKRTSATEYPTKGRGGKGIKTANITDKNGNLAG 751



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 79/225 (35%), Gaps = 8/225 (3%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           D G    T       + +     +       V  +     ++++ +   L AL  +EGD 
Sbjct: 590 DEGETIQTVINAKSDEASDNNHLVFVTRQGLVKRTKEAEFKNIRQN--GLIALKLREGDE 647

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L      +  + I++ +  G +       + S      A    + L     +V A     
Sbjct: 648 LINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMSRMA-AGVKGVTLRDGDQVVGAAAITE 706

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++L+++ KG       +E     R GK     +  +K   +  +V V+GD  + V+ +
Sbjct: 707 DQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKNGNLAGIVTVSGDEDIMVITD 766

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
              ++  ++  I +  R  +GV++    D            E + 
Sbjct: 767 TGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEID 811


>gi|157151071|ref|YP_001450518.1| DNA gyrase subunit A [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075865|gb|ABV10548.1| DNA gyrase, A subunit [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 817

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR++F     + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 359 VTRRTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVLTIIREELDEVKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 E-----RRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G       ++     + G   L +  E+++  V 
Sbjct: 592 GETIQTIINVEQDHSQDSYLFFTTRLGVVKRTSVADFANIRQNGLKALNLKDEDELINVF 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + +DG         + +    +
Sbjct: 652 LTDGAADVIIGTKFGYSVRFNETAVRNMSRIATGVRGVNLRDGDQVVGAGV-VSDNDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 VITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGPLAG 750


>gi|125624259|ref|YP_001032742.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493067|emb|CAL98031.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363]
          Length = 836

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/753 (32%), Positives = 385/753 (51%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G     
Sbjct: 7   NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             KKSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA R
Sbjct: 67  PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+
Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A   L++NPE S+  L+  I GPDFPTG  +V  +  I  +Y  G+G  
Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGA-LVMGKSGIRRAYETGKGSI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  +  
Sbjct: 246 TLRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGI 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R L   +++ ++F L+ ++T F  NM  +    +P+++ L  IL +++ H+ E
Sbjct: 306 RVVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEK-GIPKILSLKEILVDYIEHQIE 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQ 427
           V+ RR++F     + R  IL+GL IA  NID II IIR          +      L+E Q
Sbjct: 365 VVERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+
Sbjct: 425 SQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDILAKPERVKKIIREELEEVKRKFA 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFK 546
                         +   D    +  +I       +        R+       +  +   
Sbjct: 485 DKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRGVQGMGMS 544

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           + D ++  +   T D +L  +  G+ Y +    +       +   I  L+ L+  + I T
Sbjct: 545 DDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLDDGEKIAT 604

Query: 605 AFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
               D       L   +  G       S+       G   LK+   +++  V++ +G D 
Sbjct: 605 IINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDE 664

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +       + F    + +M R   GV+  + ++G    V   +I +    +  +    
Sbjct: 665 VIIGTHLGYSVRFKGAIVRDMGRAAAGVKGVNLREGDFV-VGTSRIDDNQEVLVISENGL 723

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +           RGG G  V     R+GK   
Sbjct: 724 GKRTQASEYPTKGRGGKGMKVMNVTERTGKLAG 756



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 72/190 (37%), Gaps = 8/190 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++      +     +  L AL  ++GD L   L     D +++ +  G +       +  
Sbjct: 625 IVKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRD 684

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--T 640
                 A    ++L     +V     D   ++LV+S  G     + SE     R GK   
Sbjct: 685 MGRAA-AGVKGVNLREGDFVVGTSRIDDNQEVLVISENGLGKRTQASEYPTKGRGGKGMK 743

Query: 641 FLKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
            + V+    K+  +  V GD  + V+ +   ++  ++  I +  R  +GV++        
Sbjct: 744 VMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRL--DDE 801

Query: 698 SDVICFKICE 707
           + ++ F + +
Sbjct: 802 AQIVTFALVD 811


>gi|331700401|ref|YP_004397360.1| DNA gyrase subunit A [Lactobacillus buchneri NRRL B-30929]
 gi|329127744|gb|AEB72297.1| DNA gyrase, A subunit [Lactobacillus buchneri NRRL B-30929]
          Length = 850

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/761 (30%), Positives = 376/761 (49%), Gaps = 16/761 (2%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N  N +  +   V  V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M E+
Sbjct: 3   NKDNHDEPIAGRVTNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMHEL 62

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVG+V+GK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 63  GVTPDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGD 122

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR++++A  +L+ +++D +DF+  Y+  + EP V PS+FPNLL NG SGIA
Sbjct: 123 GAAAMRYTEARLSKIAMEMLRDINKDTIDFQPNYDGTEREPSVLPSRFPNLLVNGASGIA 182

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+  A   L+ NP+ +   L+E + GPDFPTGG +V  +  I ++Y 
Sbjct: 183 VGMATNIPPHNLSEVISAIHVLMKNPDATTADLMEALPGPDFPTGG-VVMGKSGIRKAYE 241

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VRA+  +E    G   I+ TE+PY V K++LIE+IAEL   KRI  + DI DE
Sbjct: 242 TGKGTIIVRAKVEIEGEAGGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDE 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   V+    R    ++++ +++ L+ M+T F  NM  +     P+++ L  IL  +
Sbjct: 302 SDREGMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVK-GTPKILSLKEILNYY 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRF 421
           L H+ EV+ RR+ + +     R  IL+GL IA  +IDEII IIR           ++  F
Sbjct: 361 LEHQVEVIQRRTKYELNKAQARAHILEGLRIALDHIDEIIKIIRGSQTGDVAKNQLIEGF 420

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L + Q  AIL++RL  L  LE  +I  E + L+ + E+  ++L S ++    I  E+ E
Sbjct: 421 GLDDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEEYKAILASRERVNEIIYQELLE 480

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDL 540
           ++  F               +   D    +  +I       +        ++       +
Sbjct: 481 IQNKFGDPRRTELLVGEVLSLEDEDLIEEEDVIISLTHNGYIKRLPTSEFKAQNRGGRGV 540

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
             +     D ++  +   T D +L  +  GK Y +    +       +   +  L+++ +
Sbjct: 541 QGMGVHNDDFVEHLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAKGIPVINLLNIGN 600

Query: 599 NQDIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           N+ I                L  V+  G       S+       G   + +  ++++  V
Sbjct: 601 NEKIQAVINVSDKNNDIEKDLFFVTLMGTVKRTPVSDFANIRSNGLKAINLKDDDQVSNV 660

Query: 654 VKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           +  + D  + +       + F+   +  M R   GVR    ++     V    +      
Sbjct: 661 LIASEDQNIIIGTHRGYAVSFNAADVRSMGRSATGVRGVRLRENDYV-VGSDILKPDSEV 719

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +   Y +        +  RGG G        ++G    
Sbjct: 720 FIISENGYGKRTPAAEYPIKGRGGKGIKTANITEKNGPLAG 760



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 67/182 (36%), Gaps = 6/182 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  L A++ K+ D +   L A     I++ +  G A +  A ++ S       ++  
Sbjct: 640 NIRSNGLKAINLKDDDQVSNVLIASEDQNIIIGTHRGYAVSFNAADVRSMGRSATGVRG- 698

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           + L  N  +V + +     ++ ++S  G       +E     R GK      +   +   
Sbjct: 699 VRLRENDYVVGSDILKPDSEVFIISENGYGKRTPAAEYPIKGRGGKGIKTANITEKNGPL 758

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             L      + + ++ +   ++ FS++ + +  R   GV L    DG     +     + 
Sbjct: 759 AGLTTVNGEEDIMLITDQGVMIRFSVEDVSQTGRATLGVHLIRMTDGAKVATMAKVEKQD 818

Query: 709 LT 710
            +
Sbjct: 819 DS 820


>gi|226952085|ref|ZP_03822549.1| DNA gyrase [Acinetobacter sp. ATCC 27244]
 gi|226837177|gb|EEH69560.1| DNA gyrase [Acinetobacter sp. ATCC 27244]
          Length = 909

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/826 (29%), Positives = 409/826 (49%), Gaps = 94/826 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM ++   IL  +++D VD+ D Y+  +  P V P++ PNLL NGT+GIAVGMAT++
Sbjct: 121 TEVRMQKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  +NP IS+E L+E+I GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYANNPNISVEGLMEHITGPDFPTGG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K++ IE+IAEL+  K++  + ++RDES ++  
Sbjct: 240 IRGKYHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F+ + ++  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVIVNNLFLHTQLQNSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ + ++    R  IL+GL +A  NID II  I+    P                 
Sbjct: 359 VVTRRTMYELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGV 418

Query: 420 -------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV+AIL LRL  L  LE+ ++ 
Sbjct: 419 VALLEKAGAISVRPDEIEGEDPARPFGLSGDIYRLSPTQVNAILELRLHRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN      N I  E+  + + +  +     RRT   E   +   
Sbjct: 479 AEYTEILGQIAELTAILNDFNLLMNVIREELALILQQYGDA-----RRTEIVE---SGVD 530

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+         ++ +      SA   K+ D ++  + A   
Sbjct: 531 FCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             +L  +  GK Y L    +       +   +  L+ L  N+ I        +     + 
Sbjct: 591 ATVLCFTNVGKVYRLRVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFPENHYVF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFS 674
           + ++ G    VE ++       G   ++++ E+ +  V    G+  + +     K + F+
Sbjct: 651 MATASGTVKRVELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFA 710

Query: 675 IDQIPEMSR-GKGVRLQSYK--------DGGISD------------------VICFKICE 707
              +  M R  KGVR             +    +                  ++   + E
Sbjct: 711 ETDVRAMGRTAKGVRGMRVSFASNTIDVEDAEVENDDSDDNDDSSDSNVVSRIVSLVVPE 770

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               + +    Y +          KRGG G +  K   R+G+ +S+
Sbjct: 771 TGEVLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELISA 816



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 7/135 (5%)

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +   +        +      D N    IV+  V   T ++L   + G        +    
Sbjct: 736 IDVEDAEVENDDSDDNDDSSDSNVVSRIVS-LVVPETGEVLCACANGYGKRTPVDDFPTK 794

Query: 635 TRKGKTFLKVSSEE---KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R GK  + + + E   ++   V +     + ++ +   L+     ++    R  +GVRL
Sbjct: 795 KRGGKGVIAIKTSERNGELISAVSIDETKELMLISDGGTLVRTRAAEVATTGRNAQGVRL 854

Query: 690 QSYKDGG-ISDVICF 703
               D   +  V+  
Sbjct: 855 IRLSDAETLVGVVSI 869


>gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656]
 gi|238874110|gb|ACR73817.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656]
          Length = 852

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/765 (30%), Positives = 396/765 (51%), Gaps = 33/765 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  + + ++ V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RR++++M E+G    
Sbjct: 2   DDKIFDQIQQVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELGNTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++++  +++ + ++ VDF   ++E + EP V PS++PNLL NGT+GIAVGMAT
Sbjct: 122 RYTEARLSKISLELIKDIGKNTVDFEPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           +IP HN++E+  A + LIDN     E +I++L++ + GPDFPTGGII+     I E+YR 
Sbjct: 182 NIPPHNLREVVNAVVRLIDNDIEDKETTIDELIDVVKGPDFPTGGIIL-GTSGIKEAYRT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL   K+I  + D+RDE+
Sbjct: 241 GRGKIRVRAVTNIEPMENGKNRIVVTELPYNVNKARLIEKIAELHKDKKIDGITDLRDET 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R ++P +++  +F  + ++  F +    L     P+V+ L  +L  +L
Sbjct: 301 SREGMRIVVELRRDVNPSVVLNLLFKHTQLQDTFGVINLALV-NGEPKVLNLYDLLNYYL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H+++V+ RR+ F +   + R  I++GL+IA  NIDE+I+IIR+    +     ++ RF 
Sbjct: 360 IHQKDVVTRRTKFDLDKAEARAHIVEGLIIAQDNIDEVISIIRSSQTTQQAKTRLMERFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q  AI+++RLR+L  LE  ++++E   L+A+  ++ ++L   K+    I  EI  +
Sbjct: 420 LTDEQSQAIVDMRLRALTGLEREKLEAEYKELMAQIAQLKAILADEKKLLGVIREEIIAI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------K 534
            + +              E+   +     + +I +    + ++  G+I+ +         
Sbjct: 480 ADKYGDDRKT--------EIGYDEYDMSMEDLIPETNTVITMTKVGYIKRMSTDNFKAQH 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                +  +   E D +   L   +   ++  +  G+ Y + A  +        G AI  
Sbjct: 532 RGGKGIKGMETIEDDYIVEMLMTTSHHYLMFFTNTGRVYRIKAYEIPEASRTSRGTAIIN 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  ++ I        Y+    L + +  G        +     + G   + +  ++K
Sbjct: 592 LIPLQPDEKITAMIPIKEYEDDKYLFMATRNGIVKKTPIKDYENIRKNGLAAINLREDDK 651

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  V      + + +  +  + + F    +    R   GV   +     +   +      
Sbjct: 652 LIEVKVTDNSEDILLFTKFGQCIRFKETDVRSTGRTTMGVIGMNLAPNDVIIAMQ-TASM 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           G   +  +     +           RGG G    K   +SG  + 
Sbjct: 711 GEAVLLVSSNGLGKRTRIDEFTTQNRGGKGVKCYKITEKSGNLVG 755



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 98/333 (29%), Gaps = 21/333 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY-QIKSELDNLLA 456
               EI     +      +  +   +T  +V  I  +   + +      +    ++ +  
Sbjct: 486 DRKTEIGYDEYDMSMEDLIPETNTVITMTKVGYIKRMSTDNFKAQHRGGKGIKGMETIED 545

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC------EVSRADKATL 510
           +      +  S                + +         R T        +      A +
Sbjct: 546 DYIVEMLMTTSHHYLMFFTNTGRVYRIKAYEIPEASRTSRGTAIINLIPLQPDEKITAMI 605

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRIL 564
                E +    + +  G ++              L+A++ +E D L        ++ IL
Sbjct: 606 PIKEYEDDKYLFMATRNGIVKKTPIKDYENIRKNGLAAINLREDDKLIEVKVTDNSEDIL 665

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           L +  G+       ++ S       +  + +L  N  I+          +L+VSS G   
Sbjct: 666 LFTKFGQCIRFKETDVRSTGRTTMGVIGM-NLAPNDVIIAMQTASMGEAVLLVSSNGLGK 724

Query: 625 IVEESEIIANTRKGKTF----LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIP 679
                E     R GK      +   S   +  V  V   D + ++     ++   +  + 
Sbjct: 725 RTRIDEFTTQNRGGKGVKCYKITEKSGN-LVGVKSVENDDELMLITTEGIIIRIQVSDVT 783

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            + R   GV+L + K+G     I   + +    
Sbjct: 784 VLGRITTGVKLINLKEGVSVASIAKVVEDKTLM 816


>gi|116628689|ref|YP_813861.1| DNA gyrase, A subunit [Lactobacillus gasseri ATCC 33323]
 gi|238853344|ref|ZP_04643724.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4]
 gi|116094271|gb|ABJ59423.1| DNA gyrase subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238834032|gb|EEQ26289.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4]
          Length = 829

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/765 (30%), Positives = 393/765 (51%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGG IV  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGG-IVMGRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVV+E+PY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTNIETEKNGRERIVVSELPYLVNKAELVKKIADLAREKIIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +     P  + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIV-NGAPHFLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII IIR           ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E  +L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           ++ F        RRT   E      +   + +IE++ + + +++ G+I+ + +       
Sbjct: 479 QKRFGD-----DRRTKIAE--GEAVSIEDEDLIEQKDVLLTLTHNGYIKRMPADEFKVQN 531

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +  ++ D +   + + T D +L  +  GK Y+  A  +     + +   I  
Sbjct: 532 RGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++L+  + I              L  V+  G     + SE     R G   L +   ++
Sbjct: 592 LLELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDE 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+ + +  M R   GVR  + +D     V    +  
Sbjct: 652 LNNVLTTDGKQNILIGTHLGYAVTFNENDVRSMGRTAAGVRGINLRDNDYV-VGSDILEP 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G        ++G    
Sbjct: 711 DSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAG 755



 Score = 90.6 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 67/193 (34%), Gaps = 6/193 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               L AL  ++GD L   L       IL+ +  G A T    ++ S
Sbjct: 624 TVKRTKVSEFQNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRS 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 A    I+L  N  +V + + +   ++LV+S KG       SE     R GK   
Sbjct: 684 MGRTA-AGVRGINLRDNDYVVGSDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIK 742

Query: 643 KVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
             +       +  V  V GD  + ++     ++ F +D + +  R   GVRL    DG  
Sbjct: 743 TANITEKNGPLAGVTVVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQ 802

Query: 698 SDVICFKICEGLT 710
              I         
Sbjct: 803 VASITAVPKANDE 815


>gi|119358427|ref|YP_913071.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266]
 gi|119355776|gb|ABL66647.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266]
          Length = 827

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E +  +S+   + + YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G  
Sbjct: 1   MQRERILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARIVGEV+GK HPHGD +VYDSLVRL Q F  RYPLI GQGNFG+IDGDS AA RY
Sbjct: 61  HKKSARIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSIDGDSPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +L+ +D++ VDF   +++   EP V PS  PNLL NG+SGIAVGMAT+I
Sbjct: 121 TEVRMKAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P  N++E+ +  +ALI+NP+I I  L++++I PDFPT G I+   E + ++Y  GRG   
Sbjct: 181 PPQNLREVVDGIIALIENPDIEIADLMKHVIAPDFPTAG-IIYGYEGVKQAYLTGRGKVV 239

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  VE     G   I+VTE+PYQV K RLIEKI EL+  K++  + DIRDES  D  
Sbjct: 240 IRARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  + M+  F + M  L    +P+V+ L  +++ ++ HR E
Sbjct: 300 RLVIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVD-GMPRVLNLKQMMEYYIRHRNE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           ++ RR+ + + A ++R  IL+GL I   N+DE+I  IR            + +F LTE Q
Sbjct: 359 IVLRRTQYDLTAAEKRAHILEGLKICLDNLDEVITTIRQSPDAPTAQSSLMEKFGLTEIQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RL+ L  +E  +I  E    L   +++ S+L + ++Q   I  E+ +VK+++ 
Sbjct: 419 SKAILEMRLQRLTGMERKKIDMEYQETLLLIDELRSILANPQKQMQIIREELLKVKDVYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVD 539
            +     RRT              + MI +E + + I++ G+I+                
Sbjct: 479 DA-----RRTEIVPQEGD---FSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           ++    K  D ++    A T + IL  +T G+ Y L    +        G ++  +++L 
Sbjct: 531 VAGAQAKHDDFVEHMFIASTHNYILFFTTRGRCYWLKVYEIPEAGRTARGRSLANIMELQ 590

Query: 598 HNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I   +    +D    +++ +  G        E     R G   + +   +++    
Sbjct: 591 PAEKIRAYINIRNFDEPGFIVMATGNGTVKKTGLDEFSRPRRNGIAAITIEENDELIDAR 650

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
              GDH + +   +  ++ F   +I  M R   GVR  +         +        T +
Sbjct: 651 LTDGDHQIILAKSSGYVVRFPESEIRSMGRTAMGVRGITLDADEKCISMVTTKRFDTTLL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +        L KRG  G +  K   ++G  + 
Sbjct: 711 AVTDNGFGKRSRVEDYRLTKRGARGVITLKAHEKTGAMVG 750



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 7/195 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +   G     +     ++A+  +E D L  A       +I+L  + G     P   + S
Sbjct: 618 TVKKTGLDEFSRPRRNGIAAITIEENDELIDARLTDGDHQIILAKSSGYVVRFPESEIRS 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                  ++  I L+ ++  ++          LL V+  G        +     R  +  
Sbjct: 678 MGRTAMGVRG-ITLDADEKCISMVTTKRFDTTLLAVTDNGFGKRSRVEDYRLTKRGARGV 736

Query: 642 LKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           + + + EK    + L+     D + ++  N  +    +  I    R   GVRL     G 
Sbjct: 737 ITLKAHEKTGAMVGLLDVNDEDDLIIITNNGIVNRQHVSDIRLTGRNTSGVRLIRLMAGD 796

Query: 697 ISDVICFKICEGLTW 711
           I   +          
Sbjct: 797 IISALARVPKSDEEI 811


>gi|160914818|ref|ZP_02077032.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991]
 gi|158433358|gb|EDP11647.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991]
          Length = 824

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/761 (33%), Positives = 417/761 (54%), Gaps = 31/761 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + ++ +  V +   ++  +L Y++S I ERA+PD+RDG KPVHRRI+HAM+E+G+    
Sbjct: 2   DINKDKLLQVDIAKEMKTSFLDYSMSVIVERALPDVRDGLKPVHRRILHAMNELGIVASK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  PFKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +L+ ++++ VDF   Y+ E+ EP V P++FPNLL NG+ GIAVGMAT+
Sbjct: 122 YTEARMSKIAMEMLKDINKNTVDFVPNYDGEEKEPSVMPARFPNLLVNGSVGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ E  +A  A++DNP+I++ + +  YI GPDFPTGG+I+  R  I ++Y  GRG 
Sbjct: 182 IPPHNLGETIDAIFAIMDNPDITVLELMDNYIFGPDFPTGGMIL-GRAGIRQAYETGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  +EE+  G   IVVTE+PYQV K+ LI KIA+L+  K+I  +  + DES  + 
Sbjct: 241 IMIRCKHHLEEMDNGKTRIVVTEVPYQVNKANLITKIADLVREKQIDGITYLNDESNREG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    + +  D+++  +F ++ ++T F +NM  L   R P+ M +  +L  ++ H+ 
Sbjct: 301 IRIVIELRKDVQVDVVLNQLFRMTSLQTSFGVNMLAL-HDRSPKQMGIKELLGHYIDHQI 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTEN 426
           +V  RR+ + ++  + R  IL+GL IA  +IDEII IIR+          ++  F L+E 
Sbjct: 360 DVTVRRTKYDLKKAEDRAHILEGLRIALDHIDEIIHIIRSSKNDSEARSRLMENFELSEI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL +RLR L  LE  +I++E   LLA    +  +L +  +    I  E+ EVK  +
Sbjct: 420 QANAILEMRLRRLTGLERDKIENEYQELLALIIDLKDILANHDRVLQIIRDELTEVKNKY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT   +   AD     + +I  E I + ++  G+I+ + + +         
Sbjct: 480 GDE-----RRTEISD---ADYDMQDEDLIPVEDIVITMTTNGYIKRMPTDTYHTQNRGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  +   E D +++ +   T D +LL +  GK Y +    + +     +   +  L++L
Sbjct: 532 GIKGMAVNEDDIVEMLVPMSTHDFLLLFTNIGKVYRIKGYKVPNASRTAKGLPVVNLLNL 591

Query: 597 NHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           + ++ +              L+ V+  G    V  +E  +  + GK  + +   +++  V
Sbjct: 592 DKDEKVKALVPMKVDHEAEYLMFVTKNGLVKRVPSAEFASIRQNGKIAITLREGDELVGV 651

Query: 654 VKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            + TGD  + + G N K + F  D +  M R   GV+  +    G   V      +G   
Sbjct: 652 KETTGDDEIIIAGSNGKAVRFHEDGVRPMGRSASGVKGFNV--DGAVVVGMATSRDGTHL 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +   Y +        +  RG  G       P++G  +S
Sbjct: 710 LAVSENGYGKRTAIDEYRMTTRGAKGVKTINITPKTGDLVS 750



 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVT 657
           +V          LL VS  G        E    TR  K      +   + + +  V  V 
Sbjct: 697 VVGMATSRDGTHLLAVSENGYGKRTAIDEYRMTTRGAKGVKTINITPKTGD-LVSVRAVN 755

Query: 658 GDHV-AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           GD    +V  +  ++   +D+I   SR  +GV+L +  +  +   +     +   
Sbjct: 756 GDEDAMIVTNSGIIIRIEVDKIGIYSRNTQGVKLINVAEHEVVAKVAIVEKQAEE 810


>gi|227508133|ref|ZP_03938182.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511157|ref|ZP_03941206.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227085639|gb|EEI20951.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227192362|gb|EEI72429.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 850

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/761 (30%), Positives = 381/761 (50%), Gaps = 16/761 (2%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N +N        +  V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+
Sbjct: 8   NETNQGGDFPGRITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNEL 67

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVG+V+GK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 68  GVTPDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVDGHGNFGSVDGD 127

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR++++A  +L+ ++++ +DF   Y+  + EP V PS+FPNLL NG SGIA
Sbjct: 128 GAAAMRYTEARLSKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIA 187

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+  A   L+DNP+ +   L+E + GPDFPTGG +V  +  I ++Y 
Sbjct: 188 VGMATNIPPHNLSEVISAIHVLMDNPDATTADLMEVLPGPDFPTGG-VVMGKSGIRKAYE 246

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E    G   I+ TE+PY V K++LIE+IAEL   KRI  + DI DE
Sbjct: 247 TGRGSIILRAKVEIEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDE 306

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   V+    R    ++++ +++ L+ M+T F  NM  +     P+++ L  IL+ +
Sbjct: 307 SDREGMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVK-GTPRILSLKEILQYY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           L H+ EV+ RR+ + +Q    R  IL+GL IA  +IDEII IIR        K  +++ F
Sbjct: 366 LEHQVEVITRRTKYELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLITGF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q  AIL++RL  L  LE  +I  E + L+ + E   ++L+S  +    I  E+ E
Sbjct: 426 GLSDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEDFKAILSSRDRVNQIIYEELLE 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDL 540
           +++ F               +   D    +  ++       +        ++       +
Sbjct: 486 IQKKFGDERRTELLVGEVLSLEDEDLIEEEDVIVSLTHNGYIKRLPTTEFKAQNRGGRGV 545

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
             +   + D ++  +   T D +L  +  GK Y +    +       +   I  L+++N 
Sbjct: 546 QGMGVHDDDFVEQLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAKGIPIVNLLNINS 605

Query: 599 NQDIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            + I                LL V+  G       S+       G   + +   +++   
Sbjct: 606 GEKIEAVINVSDRKNDVQKDLLFVTLYGTVKRTPVSDFANIRSNGLIAIHLKEGDQLINA 665

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           + +    +V +       + F+   +  M R   GVR    ++     V    +      
Sbjct: 666 LIIDQNQNVIIGTHLGYAMSFNASDVRSMGRSATGVRGIRLRENDYV-VGADVLNPDSEV 724

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + + + +        +  RGG G        ++G    
Sbjct: 725 FIISEKGFGKRTPAADYPIKGRGGKGVKTANITEKNGPLSG 765



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 6/165 (3%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               +++ +  G A +  A ++ S       ++  I L  N  +V A V +   ++ ++S
Sbjct: 670 QNQNVIIGTHLGYAMSFNASDVRSMGRSATGVRG-IRLRENDYVVGADVLNPDSEVFIIS 728

Query: 619 SKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
            KG       ++     R GK      +   +     L      + + ++ +   ++ F 
Sbjct: 729 EKGFGKRTPAADYPIKGRGGKGVKTANITEKNGPLSGLTTVSGNEDIMLITDKGVMIRFG 788

Query: 675 IDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           I+ + +  R   GV L    +      +     +       A + 
Sbjct: 789 IEDVSQTGRSTLGVHLIRIDEDSKVSTMAKVEKQEDEASSDASKG 833


>gi|332184599|gb|AEE26853.1| DNA gyrase subunit A [Francisella cf. novicida 3523]
          Length = 862

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/781 (31%), Positives = 392/781 (50%), Gaps = 48/781 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +ALIDN E++IE L+ YI  PDFPTG  I    + I+E+Y+ GRG   +RA+  +
Sbjct: 190 VINGTIALIDNSELTIEDLIHYIPAPDFPTGSYIN-GTDGILEAYKTGRGRVIMRAKADI 248

Query: 259 EEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            E    G   IVVTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 249 HEDEASGKAQIVVTEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR+EV+ RR+ 
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHRKEVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           F ++    R  IL+GLL++  NIDE+I +I+    P     S                  
Sbjct: 368 FELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGV 427

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                ++LTE Q +AIL LRL  L  LE+ +I +E   L+   +
Sbjct: 428 DVKMYRKETLASHYGIQSDSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERIK 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +L+   +    +  E+ E+++ +          +          A     +     
Sbjct: 488 YLIGILSDVNELIRVVKEELVEIRDNYGDERKSEIIESRLDLTREDLIAEENMVVTLSMD 547

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             V         + K   V  SA   KE DS+   + A T D +L  S+ G+ Y     +
Sbjct: 548 GYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYD 607

Query: 580 LLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIAN 634
                   +   I  ++ L  ++ I        ++    + + +  G    V+ SE    
Sbjct: 608 FPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMATRLGRVKKVDLSEFARP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
              GK  + ++  +++  V    G+  + +  +  K + F    +  M R   GV     
Sbjct: 668 RSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGMRI 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +     +    + +    Y +          KR   G +      R+GK + 
Sbjct: 728 HPDQKIVSMLVTNPDEGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVV 787

Query: 753 S 753
           +
Sbjct: 788 A 788



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 104/349 (29%), Gaps = 22/349 (6%)

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            +  E        R+      +   + +++            +               + 
Sbjct: 513 NYGDERKSEIIESRLDLTREDLIAEENMVVTLSMDG--YVKTQPLSMYNAQKRGGVGKSA 570

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            +     ++    L    +  +       +   +  D  + S   +   I   +      
Sbjct: 571 TKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFPVASRISKGRPINNIL------ 624

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
                +   R T    +S+ ++            +             +  S    A+  
Sbjct: 625 ---PLEKDERITAMMPISQFNEGWYVFMATRLGRVK----KVDLSEFARPRSTGKIAIGL 677

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            +GD L          +I++ S  GKA      ++ +      A    + ++ +Q IV+ 
Sbjct: 678 NDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSA-AGVTGMRIHPDQKIVSM 736

Query: 606 FVYDSTCKLLVV-SSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKMKLVVKVTGD-H 660
            V +    +++  +  G       SE     R   G   +  S    K+ + V V  D  
Sbjct: 737 LVTNPDEGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDED 796

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           + ++ +N  L+  S D++ E  R  +GVRL + ++      +     + 
Sbjct: 797 IVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDD 845



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G             +   + +  +     N  +V A + ++   +++++  G     
Sbjct: 750 TENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVMITDNGTLVRT 809

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
              E+    R   G   + + + EK+  +  V  D V
Sbjct: 810 SSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDV 846


>gi|310824712|ref|YP_003957070.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
 gi|309397784|gb|ADO75243.1| DNA gyrase, A subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 919

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/797 (29%), Positives = 385/797 (48%), Gaps = 63/797 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   +   YL Y++S I  RA+PD+RDG KPVHRR+++AM ++G     A+KKS
Sbjct: 23  ELIPVNIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHDLGNTHNRAYKKS 82

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD SVY+++VRLAQ +  RY L+ GQGNFG++DGDS AA RYTE R
Sbjct: 83  ARVVGDVIGKYHPHGDASVYEAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVR 142

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++AE +L  +D++ VDF   Y++  +EP+V P+KFPNLL NG++GIAVGM T+IP HN
Sbjct: 143 MDRLAEELLADIDKETVDFGPNYDDSLTEPLVMPTKFPNLLVNGSTGIAVGMTTNIPPHN 202

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  L LID+P+ ++  L+++I GPDFPT   I   RE I  +Y  GRG   +RAR
Sbjct: 203 MGEVIDGTLHLIDHPQATVRDLMQFIPGPDFPTAATIT-GREGIARAYETGRGQITIRAR 261

Query: 256 WCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +E   +G    I++TEIPYQV K+RLIEKIA+L+  K++  + DIRDES      +  
Sbjct: 262 TEIETSKKGDREAIIITEIPYQVNKARLIEKIADLVREKKLEGISDIRDESDRQGMRIFI 321

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ ++F ++ +ET F   + +   G  P+ + L  +L  +++HRR+V+ R
Sbjct: 322 ELKRDAISGVVLNNLFSMTPLETTFGA-VMLAIDGGQPRTLNLKELLDRFISHRRDVITR 380

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-------------------- 414
           R+ + ++    R+ I++GLL+A   ID ++++IR    P                     
Sbjct: 381 RTRYELRKALARLHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMHILSSELYEHERF 440

Query: 415 --------------------------------PVMVSRFSLTENQVDAILNLRLRSLRKL 442
                                                    +E Q   IL +RL+ L  L
Sbjct: 441 GNLPRIDYAQAKAQMEMLVSRARAEEPDYFGLEHKYEGQGFSEIQAQNILEMRLQRLTGL 500

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +  ++  EL  L+ +  ++  +L       N I  E+++++  +                
Sbjct: 501 QREELFKELLALVRDIARLRDILAHESSLLNVIKTELQDIRARYGDKRRTEITGEVSEIT 560

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           S    A     +       V  S     R+ K      +    KE D +     A T   
Sbjct: 561 SEDLIAEEDMVVTLSHTGYVKRSPLNEYRAQKRGGRGKTGATTKEDDFVTDLFVASTHAF 620

Query: 563 ILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVV 617
           ++ ++T GK Y+L    +        G+AI  L+    ++ +    V   +     +  V
Sbjct: 621 LMPITTKGKLYSLKVHQIPQASRTSRGKAIINLVKFEEDEKLAQVLVTRDFPENRFVFFV 680

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           + KG     + S        G   L +   +++  V    G   V +       + F  +
Sbjct: 681 TKKGVVKRTDLSAFANVRVSGIIALGIEEGDELVAVKITDGSKDVLLSTAQGMSIRFPEE 740

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           ++  M R   GV+  +  DG    V    + +  T +      Y +   +    +  RGG
Sbjct: 741 EVRSMGRQAYGVKGITLVDGDEV-VGADVVEKDATILTVTENGYGKRTQEAEYRVQGRGG 799

Query: 736 VGSLVPKGFPRSGKFLS 752
            G +  K   R+GK + 
Sbjct: 800 KGIIDIKTTERNGKVVG 816



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 98/327 (29%), Gaps = 19/327 (5%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
            EI   +        +      +T +    +    L   R  +             +   
Sbjct: 550 TEITGEVSEITSEDLIAEEDMVVTLSHTGYVKRSPLNEYRAQKRGGRGKTGATTKEDDFV 609

Query: 461 IDSLLNSGKQQWNQIACEIREVKEI-FSKSTDLGRRRTTFC------EVSRADKATLQQA 513
            D  + S       I  + +                R          E        L   
Sbjct: 610 TDLFVASTHAFLMPITTKGKLYSLKVHQIPQASRTSRGKAIINLVKFEEDEKLAQVLVTR 669

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLS 567
              +      ++ +G ++     +        + AL  +EGD L        +  +LL +
Sbjct: 670 DFPENRFVFFVTKKGVVKRTDLSAFANVRVSGIIALGIEEGDELVAVKITDGSKDVLLST 729

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
             G +   P   + S       +   I L    ++V A V +    +L V+  G     +
Sbjct: 730 AQGMSIRFPEEEVRSMGRQAYGV-KGITLVDGDEVVGADVVEKDATILTVTENGYGKRTQ 788

Query: 628 ESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           E+E     R GK  + + + E+    + LV     D V +V     L+     +I  + R
Sbjct: 789 EAEYRVQGRGGKGIIDIKTTERNGKVVGLVQVKDADEVLLVTNGGMLIRMKAREISVIGR 848

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGL 709
             +GVRL + ++G        K+ E  
Sbjct: 849 NTQGVRLIALENGTEKVTGISKLPESS 875


>gi|325689662|gb|EGD31666.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK115]
          Length = 826

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/760 (32%), Positives = 396/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDTSAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + +DG         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|298291625|ref|YP_003693564.1| DNA topoisomerase IV, subunit alpha [Starkeya novella DSM 506]
 gi|296928136|gb|ADH88945.1| DNA topoisomerase IV, A subunit [Starkeya novella DSM 506]
          Length = 744

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/747 (55%), Positives = 550/747 (73%), Gaps = 4/747 (0%)

Query: 6   ISNSNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +       ++  ++ + L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  +
Sbjct: 1   MGEPPIPTDDGTIEPIGLKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            LD G  F+KSA+IVG+V+G  HPHG+ ++YD++VRLAQ F QRYPL+ GQGNFGNIDGD
Sbjct: 61  RLDPGGGFRKSAKIVGDVMGSFHPHGNMAIYDAMVRLAQDFSQRYPLVDGQGNFGNIDGD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           +AAA RYTEAR+T+VA LIL G+DEDAVDFR  Y+    EPVV P  FPNLLANG++GIA
Sbjct: 121 NAAAERYTEARLTEVARLILDGIDEDAVDFRPNYDGTTEEPVVMPGAFPNLLANGSTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMATSIP HN  E+ +A+L LIDNP+ + + LL+++ GPDFPTGG+++ES  SI ++Y 
Sbjct: 181 VGMATSIPPHNAAELIDASLHLIDNPQATTDDLLQFVKGPDFPTGGVVIESPASIADAYA 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRGGFR+RARW  EE GRG++ +VVTEIPY V KSRL+EKIA+L+  K++PLL D+RDE
Sbjct: 241 TGRGGFRLRARWHKEETGRGTYVVVVTEIPYGVPKSRLVEKIADLLNEKKLPLLADVRDE 300

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SAEDVR+VL P+ R++D +L+MES+F L+++ETRFPLNMNVL  G+VP+V+ L   L+EW
Sbjct: 301 SAEDVRLVLEPRARNVDAELMMESLFRLTELETRFPLNMNVLVGGQVPKVVSLAEALREW 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           + HRREVL RRS  R++ I+ R+E+L G LIAYLN+DE+I IIR ED+PK  ++  F LT
Sbjct: 361 VDHRREVLLRRSRHRLKEIEHRLEVLGGYLIAYLNLDEVIRIIREEDEPKVELMRTFELT 420

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AILN+RLRSLRKLEE++I+ E D L  EK+ I+ LL S  +QW  +A E+ E ++
Sbjct: 421 DVQAEAILNMRLRSLRKLEEFEIRKEHDALSKEKDGIEKLLGSEARQWKTVAWELGETRK 480

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
           IF   T LGRRRT F E +  D   + +A++E+EPITVV+S +GWIR+LK H  DLSAL 
Sbjct: 481 IFGPDTPLGRRRTGFGEAAAHDADAVSEALVEREPITVVVSEKGWIRALKGHVADLSALA 540

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           FK  D L+I+    TT ++L+ +T+G+ YTL A  L  GRGHGE ++L I+L    DIV 
Sbjct: 541 FKGDDELRISFFTETTAKLLVFATNGRFYTLDASKLPGGRGHGEPLRLSIELEQEADIVD 600

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
              Y    KLLV + +G  F+V E E +ANTRKGK  L V  ++    V+   GD VAV+
Sbjct: 601 VLPYQGGRKLLVAAKEGRGFLVAEDECVANTRKGKQVLGVDGQD-AVKVIPAIGDSVAVI 659

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           GENRKLL+F + QIPEM+RG+GVRLQ YKDG +SDV  F   +GLTW D++GR++  +  
Sbjct: 660 GENRKLLVFPLSQIPEMTRGRGVRLQRYKDGQMSDVKVFSAADGLTWTDTSGRTWTVT-- 717

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           DL  W G+R   G L PKGFPR+ +F 
Sbjct: 718 DLTEWRGERAAAGRLPPKGFPRNNRFA 744


>gi|73670269|ref|YP_306284.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro]
 gi|72397431|gb|AAZ71704.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro]
          Length = 949

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/769 (32%), Positives = 410/769 (53%), Gaps = 31/769 (4%)

Query: 2   GVDNISNSN-TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
             D+  +      +  V ++ +   ++  Y+ YA+S I  RA+PD RDGFKPVHRR++ A
Sbjct: 57  ASDDPEDKGIEPGQSGVTSILIENEMKRSYINYAMSVIVGRALPDARDGFKPVHRRVLFA 116

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G+     +KKSAR+VG+V+GK HPHGD +VYD++VR+ Q F  RYPLI GQGNFG+
Sbjct: 117 MKEAGITHDKPYKKSARVVGDVLGKYHPHGDTAVYDTIVRMVQDFSLRYPLIDGQGNFGS 176

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAA RYTE RM ++AE +L  +D++ V F   Y+    EP V P+K PNLL NG+
Sbjct: 177 IDGDSAAAMRYTEVRMDRIAEEMLVDIDKETVPFMPNYDGSMEEPEVLPAKLPNLLVNGS 236

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT++  HN+ E+ +  L LI+NP+I+I +L+  I GPDFPTG  I+     I 
Sbjct: 237 TGIAVGMATNMAPHNIGEVIDGILMLIENPDITIPELMTVIKGPDFPTGAHIL-GTAGIK 295

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG  ++RA   ++E  +    I+VTE+PYQV K+R+IE IA+L+  K I  + D
Sbjct: 296 SAYMTGRGALKIRAVAEIQEFKKDRQRIIVTELPYQVNKARMIENIAQLVREKTIMGISD 355

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   V+   +R  +P +++  ++  + MET F +    L     P+ + L  +
Sbjct: 356 LRDESDREGIRVVIELSRGTNPKVVLNQLYKHTQMETTFGVINLALVD-GKPKELNLKEL 414

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           L+ +L +R E++ +R+ + ++  + R  IL GL IA  NIDE++A+I+            
Sbjct: 415 LEIYLEYRMEIIQKRTLYDLRKSEERAHILDGLKIALDNIDEVVALIKGSANADEAKKGL 474

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  F+L E Q  AIL++RL+ L  LE  ++  EL+ L+    +++ ++ S + ++  I  
Sbjct: 475 MENFALDEIQSKAILDMRLQRLTGLETKKVLEELEGLVKLIGELNKIIESDELKYEIIRN 534

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+KE +  +     RRT   +   A     ++ +I +E + V I+N G+I+      
Sbjct: 535 ELLELKEKYGDA-----RRTKIMQ---AASEVREEDLIHEEEVVVTITNGGYIKRIPLKT 586

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +  KE D ++    + T + IL  +  G+ Y      +     +  G
Sbjct: 587 YTMQHRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNLGRLYWEKVYEIPEGSRQSRG 646

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           +AI  L++L   + I        +D    LL+ + +G       SE     + G   + +
Sbjct: 647 KAIVNLLELKGGETINAMIPVKEFDKNHYLLMATREGTIKKTPLSEFKNPRKAGIIAVTL 706

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++++  V+   G   V +V +  K + FS   +  M R  +GVR  +  DG   +V+ 
Sbjct: 707 DEDDELVRVLLTDGKKEVLIVSKKGKAIRFSEKDVRPMGRTARGVRGMAL-DGPEDEVVS 765

Query: 703 FKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             I +   T +      + +          +RGG G +      R+G  
Sbjct: 766 LDIVDETTTLLTVTENGFGKRTEYSQYPAHRRGGKGVITIITNERNGPV 814



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 5/143 (3%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           ++S  GKA      ++         ++ +       ++V+  + D T  LL V+  G   
Sbjct: 726 IVSKKGKAIRFSEKDVRPMGRTARGVRGMALDGPEDEVVSLDIVDETTTLLTVTENGFGK 785

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPE 680
             E S+  A+ R GK  + + + E+   +  V  V  D   +    +  ++      I  
Sbjct: 786 RTEYSQYPAHRRGGKGVITIITNERNGPVSRVRSVADDDELIFTSADGIIIRIPAKDISI 845

Query: 681 MSR-GKGVRLQSYKDGGISDVIC 702
             R  +GVR+ + K G     I 
Sbjct: 846 QGRNTQGVRIINLKSGDKVAGIA 868



 Score = 41.7 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 11/104 (10%)

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           +G           + R  G+ +  +I    N  +          +L+  S+ G    +  
Sbjct: 781 NGFGKRTEYSQYPAHRRGGKGVITIITNERNGPVSRVRSVADDDELIFTSADGIIIRIPA 840

Query: 629 SEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
            +I    R   G   + + S +K+  + ++         +N K 
Sbjct: 841 KDISIQGRNTQGVRIINLKSGDKVAGIARI---------QNGKA 875


>gi|300172308|ref|YP_003771473.1| DNA gyrase subunit A [Leuconostoc gasicomitatum LMG 18811]
 gi|299886686|emb|CBL90654.1| DNA gyrase, A subunit [Leuconostoc gasicomitatum LMG 18811]
          Length = 851

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 388/760 (51%), Gaps = 19/760 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  N   +  +   +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MSEQN---DSRIHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R+ L+ G GNFG++DGDS
Sbjct: 58  NTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++VA  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+  A   L++NPE +   L+E + GPDFPTGG IV  +  I  +Y  
Sbjct: 178 GMATNIPTHNLAEVISALHILMNNPEATTMDLMEALPGPDFPTGG-IVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +E+   G   I+VTE+PY V K+RLIE+I+EL   KRI  +  IRDES
Sbjct: 237 GRGRVTVRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V     R     +++ +++  + ++T F  NM  ++ G  PQ M L  IL  +L
Sbjct: 297 DRDGLRVSIDVRRDASASVILNNLYKETLLQTNFSFNMLAIN-GGKPQTMSLKEILVAYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--- 422
            H+REV+ RR++F +Q    R  IL+GL IA  +IDEII+IIR+    +           
Sbjct: 356 IHQREVIRRRTAFDLQKAQARAHILEGLRIALDHIDEIISIIRSSATSEEAKTRLIDGYL 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +I+ E   L+A    +  +L   ++    I  E+ E+
Sbjct: 416 LSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALITDLKDILAHEERVDQIIYDELLEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +     +      +   D    +  ++       +    +   ++       + 
Sbjct: 476 QTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYIKRVPQAEFKAQNRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            ++  + D +   +   T D +L  +  GK Y +    +       +   +  L+    +
Sbjct: 536 GINVNDEDFVDQMIATSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVNLLKFEGD 595

Query: 600 QDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           + I T         +S   L  V+  G       SE       G   L +  ++++  V 
Sbjct: 596 EKIQTVINVRGEAGESKDYLFFVTRLGVVKRTAVSEFSNIRTNGLKALTLRDDDEVLSVQ 655

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   + +  ++   + F+ + +  M R   GVR    +DG +  +    +      +
Sbjct: 656 ITDGTQSIMIATKDGYSVRFTEEDVRIMGRAAAGVRGIRLRDGDLV-IGSDVVSLNDNVL 714

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        +  RGG G        ++G    
Sbjct: 715 VITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKNGTLAG 754



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 6/188 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL  ++ D +        T  I++ + DG +      ++        A    
Sbjct: 634 NIRTNGLKALTLRDDDEVLSVQITDGTQSIMIATKDGYSVRFTEEDVRIMGRAA-AGVRG 692

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           I L     ++ + V      +LV++ KG       SE     R GK     +       +
Sbjct: 693 IRLRDGDLVIGSDVVSLNDNVLVITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKNGTL 752

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             ++ V GD  + V      ++ F+ + + +  R   GVRL   +DG     +     E 
Sbjct: 753 AGMIIVHGDEDIMVTTTQGVMIRFTTESVSQTGRATLGVRLIRLEDGAKVATLAKVEHEE 812

Query: 709 LTWIDSAG 716
              +D+  
Sbjct: 813 SLVVDAKE 820


>gi|262282818|ref|ZP_06060585.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA]
 gi|262261070|gb|EEY79769.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA]
          Length = 824

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 398/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +   G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQGGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR++F     + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLEHDKIQSEYDELIALIADLADILAKPERVLTIIREELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 E-----RRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQDEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   I  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 598

Query: 599 NQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G       ++     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVEQDHSQDSYLFFTTRLGVVKRTSVADFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + +DG         + +    +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRNMSRIATGVRGVNLRDGDQVVGAGV-VSDNDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGPLAG 757


>gi|281491610|ref|YP_003353590.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis KF147]
 gi|281375328|gb|ADA64841.1| DNA gyrase, subunit A [Lactococcus lactis subsp. lactis KF147]
          Length = 836

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/753 (32%), Positives = 385/753 (51%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G     
Sbjct: 7   NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             KKSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA R
Sbjct: 67  PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+
Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A   L++NPE S+  L+  I GPDFPTG  +V  +  I  +Y  G+G  
Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGA-LVMGKSGIRRAYETGKGSI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  +  
Sbjct: 246 TLRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGI 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R L   +++ ++F L+ ++T F  NM  +    +P+++ L  IL +++ H+ E
Sbjct: 306 RVVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEK-GIPKILSLKEILVDYIEHQIE 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQ 427
           V+ RR++F     + R  IL+GL IA  NID II IIR          +      L+E Q
Sbjct: 365 VVERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+
Sbjct: 425 SQAILDMRLRRLTGLERDKIEAEYQDLVALIADLADILAKPERVKKIIREELEEVKRKFA 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFK 546
                         +   D    +  +I       +        R+       +  +   
Sbjct: 485 DKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRGVQGMGMS 544

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           + D ++  +   T D +L  +  G+ Y +    +       +   I  L+ L+  + I T
Sbjct: 545 DDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLDDGEKIAT 604

Query: 605 AFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
               D       L   +  G       S+       G   LK+   +++  V++ +G D 
Sbjct: 605 IINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDE 664

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +       + F    + +M R   GV+  + ++G    V   +I +    +  +    
Sbjct: 665 VIIGTHLGYSVRFKGAVVRDMGRAAAGVKGVNLREGDYV-VGTSRIDDSQEVLVISENGL 723

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +           RGG G  V     R+GK   
Sbjct: 724 GKRTQASEYPTKGRGGKGMKVMNVTERTGKLAG 756



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 73/190 (38%), Gaps = 8/190 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++      +     +  L AL  ++GD L   L     D +++ +  G +       +  
Sbjct: 625 IVKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRD 684

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--T 640
                 A    ++L     +V     D + ++LV+S  G     + SE     R GK   
Sbjct: 685 MGRAA-AGVKGVNLREGDYVVGTSRIDDSQEVLVISENGLGKRTQASEYPTKGRGGKGMK 743

Query: 641 FLKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
            + V+    K+  +  V GD  + V+ +   ++  ++  I +  R  +GV++        
Sbjct: 744 VMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRL--DDE 801

Query: 698 SDVICFKICE 707
           + ++ F + +
Sbjct: 802 AQIVTFALVD 811


>gi|303230598|ref|ZP_07317348.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6]
 gi|302514653|gb|EFL56645.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6]
          Length = 821

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/760 (33%), Positives = 398/760 (52%), Gaps = 16/760 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++       N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G
Sbjct: 1   MADQQ-WSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD+SVYD+ VRLAQ F  RY L+ G GNFG+IDGDS
Sbjct: 60  MTPNKPYKKSARIVGDVLGKYHPHGDRSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDS 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++ + +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAV
Sbjct: 120 AAAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+C     LIDNP++++++L+  I GPDFPTG  ++  RE I ++Y  
Sbjct: 180 GMATNIPPHNLNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGA-LILGREGIKKAYST 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RAR  +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES
Sbjct: 239 GRGSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++      + PD+++  ++  + ++  F + M  L     P+V+ L  +L  +L
Sbjct: 299 DRQGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVD-GHPRVLNLKEVLGYYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR  V+ RR+ F +   + R  IL+GLLIA  +IDE+IA IR+       +  ++ +F 
Sbjct: 358 DHRLNVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RLR L  LE  +I+ E   LLA  E + ++L S  +Q   I  E+ ++
Sbjct: 418 LSEKQAVAILDMRLRRLTGLEREKIEDEYKELLALIEDLKAILASEARQRQIIKDELDDM 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ +           T         A  +  +   +   +   N    R+       +  
Sbjct: 478 KKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIG 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---GRGHGEAIQLLIDLNHN 599
           +  KE D +   +H  T + +L  ++ G+ Y L A  +         G A+  ++ L   
Sbjct: 538 MKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVG 597

Query: 600 QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + + T    +       L +V+  G        E     R G   + +   +++  V+  
Sbjct: 598 ESVTTMIDLERIHENVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDDGDRLISVIVT 657

Query: 657 TGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT--WI 712
           TG+   ++  +    +  + + +  M R   GVR    K G +         +       
Sbjct: 658 TGNQDILIGTKLGMAIRCNEEDVRLMKRAAHGVRGIKLKTGDVVVGAGVLESDESEAQVF 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   Y +        + KRGG+G+   +   ++G  ++
Sbjct: 718 TISEEGYGKRNEADAYNVQKRGGIGTKNFRINDKTGDVVA 757



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 10/197 (5%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+               L+A++  +GD L   +       IL+ +  G A      ++  
Sbjct: 623 VVKRTAIEEYRNIRRSGLNAINLDDGDRLISVIVTTGNQDILIGTKLGMAIRCNEEDVRL 682

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGK 639
            +         I L     +V A V +S     ++  +S +G     E        R G 
Sbjct: 683 MKRAA-HGVRGIKLKTGDVVVGAGVLESDESEAQVFTISEEGYGKRNEADAYNVQKRGGI 741

Query: 640 TFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPE-MSRG-KGVRLQSYK 693
                   +K   VV V      D V ++ E  K++ F+++ I     +   GV+ Q+  
Sbjct: 742 GTKNFRINDKTGDVVAVEVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLD 801

Query: 694 DGGISDVICFKICEGLT 710
           +G     I       + 
Sbjct: 802 EGDKVASIAVIPASEIE 818


>gi|82777638|ref|YP_403987.1| DNA gyrase subunit A [Shigella dysenteriae Sd197]
 gi|309785078|ref|ZP_07679711.1| DNA gyrase, A subunit [Shigella dysenteriae 1617]
 gi|81241786|gb|ABB62496.1| DNA gyrase, subunit A [Shigella dysenteriae Sd197]
 gi|308927448|gb|EFP72922.1| DNA gyrase, A subunit [Shigella dysenteriae 1617]
          Length = 875

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    L  ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLVYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEMEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|317131015|ref|YP_004090329.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3]
 gi|315468994|gb|ADU25598.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3]
          Length = 846

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/752 (31%), Positives = 380/752 (50%), Gaps = 13/752 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +  V +R  +E+ +L Y++S I  RA+PD+RDG KPVHRRI++AM E  L    
Sbjct: 2   NFDGQKLIPVEIREEMEKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMYEDNLLPTN 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A++KSA  VG V+G+ HPHGD SVYD+LVR+AQ F  RYPL+ G GNFG+IDGD  AAYR
Sbjct: 62  AYRKSATTVGNVLGRYHPHGDASVYDALVRMAQSFSLRYPLVDGHGNFGSIDGDGPAAYR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  +LQ ++++ VDF+  +++   EP+V PS+FPN+L NG+SGIAVGMAT+
Sbjct: 122 YTEARMSRISLEMLQDIEKETVDFQPNFDDVRKEPIVIPSRFPNILVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +    LIDNP+ ++E+L  +I GPDFPTGG I+  R  I E+Y  GR   
Sbjct: 182 IPPHNLGEVIDGMALLIDNPDATLEELTAHIQGPDFPTGG-IIMGRAGIREAYVKGRSRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE   G   I+VTEIPY V K+R++E IAEL   KRI  + D+RDES  +  
Sbjct: 241 TLRAKATIEEDDNGRSRIIVTEIPYMVSKARIVEGIAELHKEKRIEGISDLRDESDREGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P +++  ++  S ++   P+ M  L     P+V+PL  IL E++  + +
Sbjct: 301 RIVVELKRDANPQVVLNRLYTYSQLQETVPVIMLALV-NGHPRVLPLRDILTEYIHFQEQ 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+ + ++  + R  IL+GL IA   IDE+I I+R            + RF L + Q
Sbjct: 360 VVTRRTQYDLRKAEERAHILEGLKIALDFIDEVIRILRASKSIPEGKAALMERFELDDIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RL  L  LE  +I+ EL  L  +     ++L   ++    +  E  EVK  F 
Sbjct: 420 AQAIVQMRLGQLTNLEREKIEEELAALETKIANFKAILADEQRILQIVKEEALEVKAKFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                     +               +       +         S +     ++ L  +E
Sbjct: 480 DERRTRIENVSGEVDVEDLIPVEDVVLTLTNFGYIKRLPAAAYHSQRRGGRGVNGLTRRE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D  +      T D +L  ++ G+ Y L    +  G    + +    ++ +  +++I   
Sbjct: 540 EDVARELFVCSTHDFVLFFTSHGRCYRLKGYEVPEGSRTSKGMNVANILPVAQDENITAM 599

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                ++  C L++V+ KG        E     + G   + +  ++++  V+   G  H+
Sbjct: 600 IKVPKFEEDCYLVMVTKKGIVKRTSLKEYDTARKAGVIGILLEEDDELVGVLLTDGSAHI 659

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            V   N   + F       M R   GV+  S + G     +      G   +      Y 
Sbjct: 660 LVGTRNGVAIRFVETDARPMGRAAHGVKAISLEGGDYVVGVTVPNGAGSLLL-ITENGYG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        +  RGG G        ++G    
Sbjct: 719 KRVPFEDFRVQNRGGKGLTSYNINEKTGPVAG 750



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 5/131 (3%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                   G        I L     +V   V +    LL+++  G    V   +     R
Sbjct: 672 VETDARPMGRAAHGVKAISLEGGDYVVGVTVPNGAGSLLLITENGYGKRVPFEDFRVQNR 731

Query: 637 KGKTFLKVSSEEKMKLV----VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
            GK     +  EK   V    V    D    +  +  ++   + +IP  SR  +GVR+  
Sbjct: 732 GGKGLTSYNINEKTGPVAGLRVVEESDDALFISSDGVVIRVPVAEIPVYSRYAQGVRVMR 791

Query: 692 YKDGGISDVIC 702
             +      + 
Sbjct: 792 VGEETKVVTVT 802


>gi|198283144|ref|YP_002219465.1| DNA gyrase subunit A [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666147|ref|YP_002425372.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247665|gb|ACH83258.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518360|gb|ACK78946.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 845

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/772 (30%), Positives = 380/772 (49%), Gaps = 39/772 (5%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             VSL   + + YL YA+S I  RA+PD RDG KPVHRR++ AM EM  D+   +KKSAR
Sbjct: 9   IPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHEMSNDWNKPYKKSAR 68

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG++DGDS AA RYTE RM+
Sbjct: 69  VVGDVIGKYHPHGDTAVYDTMVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEVRMS 128

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  +L  ++++ VDF   Y+E++ EP+V P++ PNLL NG++GIAVGMAT+IP HN+ 
Sbjct: 129 RIAHEMLADLEKETVDFGPNYDEKEMEPLVMPARIPNLLINGSAGIAVGMATNIPPHNLT 188

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+  A LAL+D+PE   E L   +  PDFPT G  +  R   +E+YR GRG   +RAR  
Sbjct: 189 EVISACLALVDDPETPDEDLFTLVPAPDFPTAG-FIHGRAGSIEAYRTGRGRVVMRARCE 247

Query: 258 VE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            E +       I+VTE+PYQV K++LIE+IAE++  KR+  + D+RDES +    +    
Sbjct: 248 FETDKKSNRQSIIVTELPYQVNKAKLIERIAEMVKEKRLEGISDLRDESDKSGMRIAIEL 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + D+++ +++  + M++ F +NM  L     P+ + L  +L+ ++ HRREV+ RR+
Sbjct: 308 KRDANADVVLNNLYQHTVMQSVFNINMVALLD-GAPRTLGLRDLLQAFIQHRREVVTRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------------- 415
            F ++    R  IL+GL +A +N+D +I++IR    P                       
Sbjct: 367 VFELKKARDRAHILEGLAVALVNLDPLISLIRAAASPAEAKAQMLAKSWEPGMVAALLVE 426

Query: 416 -------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                  +    + L+E Q  AIL+LRL  L  LE+ +I+ E   LL    ++  +L S 
Sbjct: 427 RGEPSEGMHADGYHLSELQAQAILDLRLHRLTGLEQDKIRDEYLALLDRIRELLEILGSK 486

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  E+  +++ +  +        T    +       +  +       +      
Sbjct: 487 TRLMEVIREELVAIRDQYGDARRSEIVADTGDISTEDLITEEEMVVTFTHAGYIKAQPVT 546

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGH 586
              + +       A   KE D ++    A T    L  S  GK +      L        
Sbjct: 547 VFNAQRRGGKGKMATTTKEEDFVERMFCASTHAYCLFFSNLGKVFWQKVYQLPQAGRGAK 606

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ I  ++ L   + I        +     + +V+S G        E      +G   + 
Sbjct: 607 GKPIVNMLSLAPTERITAVLPVRDFTEGQFVCMVTSLGVVKKTPVMEYSRPRSQGINAIN 666

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   +++  V    G     +   +   + F   ++  M R  +GVR  S ++     + 
Sbjct: 667 LDPGDRLVAVGLSDGQREFMLFTRHGMAVRFPEAKVRAMGRNARGVRGISLEENDRV-IS 725

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +      + +    Y +           RGG G +  +   R+G  + +
Sbjct: 726 AQWVDSSQVILTTTANGYGKLTKVDEYRRTNRGGKGVIAIQTNERNGDVVGA 777



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 63/154 (40%), Gaps = 7/154 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
            +L +  G A   P   + +   +   ++  I L  N  +++A   DS+  +L  ++ G 
Sbjct: 685 FMLFTRHGMAVRFPEAKVRAMGRNARGVRG-ISLEENDRVISAQWVDSSQVILTTTANGY 743

Query: 623 AFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
             + +  E     R GK  + +     + + +  +     D + +V ++  L+  +++ I
Sbjct: 744 GKLTKVDEYRRTNRGGKGVIAIQTNERNGDVVGALAVTERDELMLVSDHGTLIRIAVNSI 803

Query: 679 PEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLT 710
               R  +GVRL +  +G  ++ +      +   
Sbjct: 804 RRTGRNAQGVRLINLGEGEQLAGLALIADTDEEE 837


>gi|332366850|gb|EGJ44591.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1059]
          Length = 826

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/760 (32%), Positives = 396/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + +DG         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|254295615|ref|ZP_04963073.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e]
 gi|157805518|gb|EDO82688.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e]
          Length = 850

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/782 (30%), Positives = 377/782 (48%), Gaps = 56/782 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NP+ S+++L+E I  PDFPT G I+     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVD-NQPKLLNLREILQCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN----------------------------------- 409
            R  +L+GL +A  NIDE IAII+                                    
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETENAAA 418

Query: 410 -----------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+ +VK  F  +             +          +    
Sbjct: 479 ADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ K       A   KE D ++    A+T D IL  S  G+ Y +   
Sbjct: 539 AGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVY 598

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G  I  +  L   + I        + +   + + ++ G            
Sbjct: 599 EVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTTALGTVKKTPLEAFSR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +KG   + +   + +       G   V +  +  K + F  + +  M R  +GVR   
Sbjct: 659 PMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQ 718

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             D      +     E  + + +    Y +           RG  G +  +   R+G+ +
Sbjct: 719 LDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVV 778

Query: 752 SS 753
           ++
Sbjct: 779 AA 780



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 662 KGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDD 721

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 722 AQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 781

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 782 LVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 824


>gi|116511953|ref|YP_809169.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11]
 gi|116107607|gb|ABJ72747.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11]
          Length = 836

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/753 (32%), Positives = 385/753 (51%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G     
Sbjct: 7   NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             KKSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA R
Sbjct: 67  PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+
Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A   L++NPE S+  L+  I GPDFPTG  +V  +  I  +Y  G+G  
Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGA-LVMGKSGIRRAYETGKGSI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  +  
Sbjct: 246 TLRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGI 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R L   +++ ++F L+ ++T F  NM  +    +P+++ L  IL +++ H+ E
Sbjct: 306 RVVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEK-GIPKILSLKEILVDYIEHQIE 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQ 427
           V+ RR++F     + R  IL+GL IA  NID II IIR          +      L+E Q
Sbjct: 365 VVERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+
Sbjct: 425 SQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDILAKPERVKKIIREELEEVKRKFA 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFK 546
                         +   D    +  +I       +        R+       +  +   
Sbjct: 485 DKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRGVQGMGMS 544

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           + D ++  +   T D +L  +  G+ Y +    +       +   I  L+ L+  + I T
Sbjct: 545 DDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLDDGEKIAT 604

Query: 605 AFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
               D       L   +  G       S+       G   LK+   +++  V++ +G D 
Sbjct: 605 IINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDE 664

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +       + F    + +M R   GV+  + ++G    V   +I +    +  +    
Sbjct: 665 VIIGTHLGYSVRFKGAIVRDMGRAAAGVKGVNLREGDFV-VGTSRIDDSQEVLVISENGL 723

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +           RGG G  V     R+GK   
Sbjct: 724 GKRTQASEYPTKGRGGKGMKVMNVTERTGKLAG 756



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 73/190 (38%), Gaps = 8/190 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++      +     +  L AL  ++GD L   L     D +++ +  G +       +  
Sbjct: 625 IVKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRD 684

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--T 640
                 A    ++L     +V     D + ++LV+S  G     + SE     R GK   
Sbjct: 685 MGRAA-AGVKGVNLREGDFVVGTSRIDDSQEVLVISENGLGKRTQASEYPTKGRGGKGMK 743

Query: 641 FLKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
            + V+    K+  +  V GD  + V+ +   ++  ++  I +  R  +GV++        
Sbjct: 744 VMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRL--DDE 801

Query: 698 SDVICFKICE 707
           + ++ F + +
Sbjct: 802 AQIVTFALVD 811


>gi|197302274|ref|ZP_03167333.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC
           29176]
 gi|197298705|gb|EDY33246.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC
           29176]
          Length = 841

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/770 (31%), Positives = 400/770 (51%), Gaps = 37/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MEDN---IFDKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   +++D VDF   ++E + EP V PS+FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMEMTADINKDTVDFTPNFDETEKEPSVLPSRFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E+  A + +ID+      E +IE++L+ I GPDFPTG  I+     I 
Sbjct: 178 GMATNIPPHNLREVIAAVVKIIDDQIEDKEETTIEEILQIIKGPDFPTGAEIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   I+VTE+P+ V K+RLIEKIAEL+  K+I  + D
Sbjct: 237 EAYRTGRGKIRVRAITNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKIDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D+S+ +   +     R ++P++++  ++  + ++  F + M  L  G  P+VM L  +
Sbjct: 297 LSDQSSREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALV-GNQPKVMNLLEM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVM 417
           L  +L H+ +V+ RR+ + +     R  IL+GLLIA  NIDE+I IIR     +     +
Sbjct: 356 LNYYLKHQEDVVTRRTKYDLNKAQERAHILEGLLIALDNIDEVIKIIRGSQNVQIAKQEL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF L+E Q  AI+++RLR+L  LE  +I++E   L+ + E+  ++L   K     I  
Sbjct: 416 IKRFGLSEVQAQAIVDMRLRALTGLEREKIEAEYAELMKKIEEFKAILADKKLLLGVIKK 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           EI  + E +        RRT        +     + +I +E + + ++  G+I+ +   +
Sbjct: 476 EILVISEKYGD-----DRRTRI---GYDEFDISMEDLIPRENVVITMTKLGYIKRMTMDT 527

Query: 538 --------VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   E D ++      +   I+  +  G+ Y + A  +        G
Sbjct: 528 FKSQNRGGKGIKGMQTLEDDYIRELFVTTSHHYIMFFTNTGRVYRMKAYEIPEAGRTARG 587

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            AI  L+ L   + I        Y+    L + + KG        +     + G   + +
Sbjct: 588 TAIINLLQLMPEEKITAIIPLREYEEGKYLFMATEKGLVKKTPIQDYANVRKTGLAAIAL 647

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++++  V      + + +V  +   + F+   +    R   GVR  +  D  +  +  
Sbjct: 648 REDDRLIEVKVTDNTEDILLVTRDGMCIRFNETDVRSTGRVSMGVRGMNLTDNDVV-IGM 706

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +G   +  + +   +  N        RGG G    K   ++G  + 
Sbjct: 707 QTASQGTDLLIVSEKGMGKRTNMDEFTRQNRGGKGVKCYKITEKTGNVVG 756



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 8/152 (5%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
              T+ ILL++ DG        ++ S       ++ + +L  N  ++          LL+
Sbjct: 659 TDNTEDILLVTRDGMCIRFNETDVRSTGRVSMGVRGM-NLTDNDVVIGMQTASQGTDLLI 717

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLL 671
           VS KG        E     R GK      +   +   +  +  V  D  + ++     ++
Sbjct: 718 VSEKGMGKRTNMDEFTRQNRGGKGVKCYKITEKTGN-VVGMKAVDEDSEIMIINTEGIII 776

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
                 I    R   GV+L + K+      + 
Sbjct: 777 RMKCSDISVYGRITSGVKLINLKEKDKVASVA 808



 Score = 44.8 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 40/334 (11%), Positives = 104/334 (31%), Gaps = 4/334 (1%)

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++   +             ++     +P+   +  + K     R  +   +S  R     
Sbjct: 479 VISEKYGDDRRTRIGYDEFDISMEDLIPRENVVITMTKLGYIKRMTMDTFKSQNRGGKGI 538

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
           + ++ L+   I  L +      I        V   +               + +L +L  
Sbjct: 539 KGMQTLEDDYIRELFVTTSHHYIMFFTNTGRVYRMKAYEIPEAGRTARGTAIINLLQLMP 598

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +  + +  L   +E     + + K    +   +          +    R      EV  
Sbjct: 599 EEKITAIIPLREYEEGKYLFMATEKGLVKKTPIQDYANVRKTGLAAIALREDDRLIEVKV 658

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            D    +  ++       +  N   +RS    S+ +  ++  + D +     A     +L
Sbjct: 659 TDNT--EDILLVTRDGMCIRFNETDVRSTGRVSMGVRGMNLTDNDVVIGMQTASQGTDLL 716

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           ++S  G                G+ ++         ++V     D   ++++++++G   
Sbjct: 717 IVSEKGMGKRTNMDEFTRQNRGGKGVKCYKITEKTGNVVGMKAVDEDSEIMIINTEGIII 776

Query: 625 IVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV 656
            ++ S+I    R   G   + +  ++K+  V KV
Sbjct: 777 RMKCSDISVYGRITSGVKLINLKEKDKVASVAKV 810


>gi|41639|emb|CAA68611.1| gyrase alpha subunit [Escherichia coli]
          Length = 878

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786


>gi|306833523|ref|ZP_07466650.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis
           ATCC 700338]
 gi|304424293|gb|EFM27432.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis
           ATCC 700338]
          Length = 818

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/753 (31%), Positives = 400/753 (53%), Gaps = 15/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGA-LVMGKSGIRKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +     VP+++ L  I+ +++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLKQIIVDYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F     ++R  IL+GLL+A  ++DE+I+IIRN +         +SRF L+E Q 
Sbjct: 359 IVRRTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E D+LLA    +  +L   ++    I  E+ ++K  ++ 
Sbjct: 419 QAILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPERVVAIIKEEMDDIKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
                        +   D    +  +I       +    +   R+ K     +      +
Sbjct: 479 PRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVND 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +  ++  G+ Y L A  +       +   I  L+ L+  + + T 
Sbjct: 539 DDFVRELVSTSTHDHVYFMTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGEIVQTI 598

Query: 606 FV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                  D    L  V+ +G      ESE     + G   L +   +++  V++  G + 
Sbjct: 599 ISQSGHDDKESYLFFVTRQGVVKRTLESEFSNIRQNGLKALNLKDGDELINVIRTNGNND 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +  +    + F+   +  MSR   GVR  + ++G    V   +I +    +    + Y
Sbjct: 659 IIIGTKTGYSVRFNESAVRSMSRSATGVRGVNLREGDEV-VGASRISDDQEVLVITEKGY 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +           RGG G        ++G+   
Sbjct: 718 GKRTLASEYPTKGRGGKGIKTANITEKNGQLAG 750



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           ++L    ++V A       ++LV++ KG       SE     R GK     +      ++
Sbjct: 689 VNLREGDEVVGASRISDDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGQL 748

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
             +  V GD  + V+ +   ++  ++  I +  R   GV++      
Sbjct: 749 AGLATVNGDEDIMVITDTGVIIRTNVASISQTGRATLGVKIMKLDQD 795


>gi|167841639|ref|ZP_02468323.1| DNA gyrase subunit A [Burkholderia thailandensis MSMB43]
          Length = 850

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/782 (30%), Positives = 376/782 (48%), Gaps = 56/782 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NP+ S+++L+E I  PDFPT G I+     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVD-NQPKLLNLREILQCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN----------------------------------- 409
            R  +L+GL +A  NIDE IAII+                                    
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETENAAA 418

Query: 410 -----------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  VK  F  +             +          +    
Sbjct: 479 ADLLDILARPERITVMIGEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ K       A   KE D ++    A+T D IL  S  G+ Y +   
Sbjct: 539 AGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVY 598

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G  I  +  L   + I        + +   + + ++ G            
Sbjct: 599 EVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTTALGTVKKTPLEAFSR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +KG   + +   + +       G   V +  +  K + F  + +  M R  +GVR   
Sbjct: 659 PMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQ 718

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             D      +     E  + + +    Y +           RG  G +  +   R+G+ +
Sbjct: 719 LDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVV 778

Query: 752 SS 753
           ++
Sbjct: 779 AA 780



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 662 KGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDD 721

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 722 AQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 781

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 782 LVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 824


>gi|331083524|ref|ZP_08332636.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404217|gb|EGG83765.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 828

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/761 (30%), Positives = 383/761 (50%), Gaps = 34/761 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V L+  +EE Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKIQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ +DF   ++  + EP V PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++EI  A + +ID       E +I++LL  + GPDFPTG  I+     I E+YR GRG 
Sbjct: 187 NLREIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATIL-GTRGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DI D S  + 
Sbjct: 246 IRVRAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISDHSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R  + ++++  ++  + M+  F + M  L  G  P+VM L  +L+ +LAH+ 
Sbjct: 306 MRICITLRRDANANVILNRLYKHTQMQDTFGVIMLALV-GNTPKVMSLLEMLEHYLAHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
           EV+ RR+ + +   + R  I+ GLL A   ID+II IIR+    +      +  F  +E 
Sbjct: 365 EVVTRRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLMDTFGFSEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q   I+N+RL  L  +E  +++ E   L  +  ++ ++L+        I  EI  + E +
Sbjct: 425 QAQEIVNMRLYQLTGMERERLEKEFQELEIKIRELKAILSDRNLLLRVIRQEILAIAEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSV 538
                   RRT        +     + +I KE   + ++  G+I+ +             
Sbjct: 485 GD-----DRRTAI---GYDEFDISMEDLIPKENTVIAMTKLGYIKRMTVDNFRSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +  +   + D ++  L   T   ++  ++ G+ Y + A  +        G AI  L+ L
Sbjct: 537 GIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKAYEIPEASRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        +     L + +  G        +     + G   + +  ++++  V
Sbjct: 597 QPEEKITAVIPINEFKKGNYLFMATKNGLVKKTPIEDYENVRKTGLAAIALREDDELIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
                   + +V +  + + F+   +    R   GVR  +  +      +    C+G   
Sbjct: 657 KFTDNKKDIILVTKFGQCIRFNETDVRSTGRVSMGVRGINLLEEDEVIGMQLT-CQGDYL 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 716 LIVSEKGLGKRTSISEFTRQNRGGKGVKCYKITEKTGNVIG 756



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 8/184 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L+A+  +E D L           I+L++  G+       ++ S       ++ +  L  
Sbjct: 641 GLAAIALREDDELIEVKFTDNKKDIILVTKFGQCIRFNETDVRSTGRVSMGVRGINLLEE 700

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVV 654
           ++ I           LL+VS KG       SE     R GK      +   +   +  V 
Sbjct: 701 DEVIGMQLTCQGD-YLLIVSEKGLGKRTSISEFTRQNRGGKGVKCYKITEKTGN-VIGVK 758

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
            V   + + ++     ++    + I  + R   GV+L   KD      I     +     
Sbjct: 759 AVNSENEIMMITTEGIIIRLECEGISILGRITSGVKLMDLKDDITVASIAKVREKEEEIS 818

Query: 713 DSAG 716
           ++  
Sbjct: 819 ENTE 822


>gi|327489848|gb|EGF21638.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1058]
          Length = 826

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R +   +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDVSAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + +DG         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|324994501|gb|EGC26414.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK678]
          Length = 826

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 396/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ E+K  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEIKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + +DG         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|312869239|ref|ZP_07729411.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3]
 gi|311095260|gb|EFQ53532.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3]
          Length = 847

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/763 (30%), Positives = 392/763 (51%), Gaps = 30/763 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
              +   +  V L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 2   TEDMSNRITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGDSAAA 
Sbjct: 62  KPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D VDF   Y+  + EP V P++FPNLL NG SGIAVGMAT
Sbjct: 122 RYTEARMSKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP+HN+ E+  A   L++NP+++I +L++ + GPDFPTGG +V  +  I ++Y  GRG 
Sbjct: 182 NIPTHNLGEVISAIHMLMNNPDVTIPELMKALPGPDFPTGG-VVMGKAGIRKAYETGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA+  +EE   G   I+V EIPY V K+ LI +IA+L   K I  + D+ DE+  D 
Sbjct: 241 IIVRAKVDIEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++ +++ ++ M+T F  NM  +     P+++ L  IL+ +L H+ 
Sbjct: 301 MRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIV-NGAPKILSLKQILQYYLEHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
           +V+ RR+ F ++    R+ I++GL IA  +IDEII IIR     +      +  + L++ 
Sbjct: 360 DVVRRRTEFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELMGNYGLSDR 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +I++E   L         +L   ++    I  E+ E+++ F
Sbjct: 420 QAQAILDMRLVRLTGLEREKIEAEYKKLTEAIADYKDILAHRERINQIIYDELMEIQKKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                  +RRT              + +IE++ I V +++ G+I+               
Sbjct: 480 GD-----KRRTEL--QVGDITNIEDEDLIEEQDIIVTLTHNGYIKRLPVDEFKSQHRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDL 596
            +  +     D ++  + + T D +L  +  GK Y++    +        G  I  L+++
Sbjct: 533 GVKGMGVHNDDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPEYGRAAQGIPIINLLNI 592

Query: 597 NHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +  + I           D    L   +  G        E       G   + +  ++++ 
Sbjct: 593 DSKEKISAVINVSHETNDDDKFLFFTTKDGTVKRTPVPEFKNIRSNGLKAINLHDDDELI 652

Query: 652 LVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
            V  +      ++   N   L F+   +  M RG  GVR    +D   S +    + +  
Sbjct: 653 DVDVIEDQQTMIIGTRNGYALSFNSAVVRSMGRGAAGVRGIRLRDND-SVIGAAPLHQDD 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +   + +        +  RGG+G        ++G  + 
Sbjct: 712 NVLVISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKNGPLVG 754



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 8/225 (3%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           D   + +    VS       +      +  TV  +     ++++S+   L A++  + D 
Sbjct: 593 DSKEKISAVINVSHETNDDDKFLFFTTKDGTVKRTPVPEFKNIRSN--GLKAINLHDDDE 650

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L           +++ + +G A +  +  + S      A    I L  N  ++ A     
Sbjct: 651 LIDVDVIEDQQTMIIGTRNGYALSFNSAVVRSMGRGA-AGVRGIRLRDNDSVIGAAPLHQ 709

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGE 666
              +LV+S  G       +E     R G     V        +  +  V GD  + +V +
Sbjct: 710 DDNVLVISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKNGPLVGMTTVAGDEDIMLVTD 769

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
              ++ F I+ + +  R   GV L    DG     +     E  +
Sbjct: 770 QGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKVEKEDDS 814


>gi|332361161|gb|EGJ38965.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1056]
          Length = 826

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + +DG         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|327462166|gb|EGF08493.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1]
          Length = 826

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 396/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + +DG         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|63259384|gb|AAY40350.1| DNA gyrase subunit A [Edwardsiella tarda]
          Length = 878

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 383/793 (48%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG++GIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  I+IE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRAR  +E +   G   IVV EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYVRARAEIEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R      ++ +++  + M+  F +NM  L     P+++ L   L+ +
Sbjct: 296 SDKDGMRIVIEVKRDAVGRGVLNNLYTQTQMQVSFGINMVAL-HQGQPKLLDLKECLEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA +NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WALGNVAAMLARAGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +   +  +L S ++    I  E+  ++E F  +        T         
Sbjct: 475 LDEYKALLEQIAALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL   
Sbjct: 535 EQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDLIDRLLVANTHDTILCFF 594

Query: 568 TDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +        S    G  I  L+ L  ++ I        Y     + + ++ G 
Sbjct: 595 SRGRMYWMKMYQLAGASRGARGRPIINLLPLEADERITAILPVREYAEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   +  +  +++  V    G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRAAGIIAVNPNYGDELIGVDLTDGNDEVMLFSVAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR            +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGIKLAGEDRVVSLIVPHGEGA-ILTVTQNGYGKRSGVAEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGSVVGA 786


>gi|332360842|gb|EGJ38648.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK49]
          Length = 826

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/760 (32%), Positives = 396/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + +DG         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|317499300|ref|ZP_07957573.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893469|gb|EFV15678.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 840

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/768 (31%), Positives = 393/768 (51%), Gaps = 35/768 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + NT+  + V  + L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+   
Sbjct: 2   DENTIF-DKVHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNG 60

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AA
Sbjct: 61  PDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAA 120

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+++++  +L  ++++ VDFR  ++E + EP V PS+FPNLL NGT GIAVGM
Sbjct: 121 AMRYTEARLSKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGM 180

Query: 188 ATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           AT+IP HN++E+  A + +IDN      E +IE+LLE I GPDFPTG  I+  R  I ++
Sbjct: 181 ATNIPPHNLREVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATIL-GRSGIDQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  +VRA   +E +  G   I+VTE+PY V K+RLIEKIA L+  K++  + ++R
Sbjct: 240 YRTGRGKIKVRAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      +     R  + ++++  ++  + ++  F + M  L     P+ M L  +L 
Sbjct: 300 DESDRSGMRICIELRRDANANVILNQLYKHTQLQDTFGVIMLALVD-GQPKTMNLHEMLD 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VS 419
            +L H+++V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR  +  +      + 
Sbjct: 359 YYLTHQKDVVTRRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKIELME 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L++ Q  AI+++RLR+L  LE  +++ E   L+    ++ ++L   K+    I  EI
Sbjct: 419 RFGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELMERIGELKAILADEKKLLGVIKDEI 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------ 533
             +++ +        RRT              + +I +E   + ++  G+I+ +      
Sbjct: 479 ALIRDKYGDE-----RRTQI---GFDVDDISMEDLIPRENTVITMTKLGYIKRMTVDNFK 530

Query: 534 --KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--A 589
                   +  +   + D ++      T   I+  +  G+ Y L A  +          A
Sbjct: 531 SQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLKAYEIPESGRTARGSA 590

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  L+ L   + I        Y+    LL+ +  G        E     + G   + +  
Sbjct: 591 IVNLLQLQPGEKITAVIPLVDYEEGKYLLMATKYGVVKKSSIMEYANIRKTGLAAITLKD 650

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           ++++  V     D  V +V +N + + F    +  + R   GVR  +   G    +    
Sbjct: 651 DDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRCIGRTSMGVRGINL-TGDDEVIGMQL 709

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +G   +  +     +           RGG G    K   ++G  + 
Sbjct: 710 DSQGEALLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITEKTGDVVG 757



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 71/194 (36%), Gaps = 8/194 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+     +         L+A+  K+ D L    +    + + L++ +G+       ++  
Sbjct: 626 VVKKSSIMEYANIRKTGLAAITLKDDDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRC 685

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                  ++  I+L  + +++   +      LL+VS+ G       SE     R GK   
Sbjct: 686 IGRTSMGVRG-INLTGDDEVIGMQLDSQGEALLIVSANGMGKRTLTSEFTTQHRGGKGIK 744

Query: 642 ---LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              +   + + +  V  V  D  + ++     ++  ++D I  + R   GV++ +  +  
Sbjct: 745 CYKITEKTGD-VVGVKAVNDDNEIMMITTEGIIIRTAVDSISILGRNTSGVKVMNVGENV 803

Query: 697 ISDVICFKICEGLT 710
               I     E L 
Sbjct: 804 EVASIAKVREEKLE 817


>gi|146278585|ref|YP_001168744.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17025]
 gi|145556826|gb|ABP71439.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17025]
          Length = 767

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/769 (50%), Positives = 520/769 (67%), Gaps = 27/769 (3%)

Query: 6   ISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++     E     +  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 1   MTDTPEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEAR+T +AEL+++G+ E+AVDFR  Y+    EPVV P+ FP+LLANG SGI
Sbjct: 121 DNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPHLLANGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ E  LA+I +P I+ E L+  I GPDFPTGG+IVE +ESI+E Y
Sbjct: 181 AVGMATNIPPHNLDELIEGCLAMIRHPAIADEALVGLIPGPDFPTGGVIVEPKESILEGY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+RA+W  E++GRG+W IVVTEIPYQVQKS+LIE++AELI  K++P L D+RD
Sbjct: 241 RTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+DVRIVL P+ R++DP++LM  +F  SD+E RF +NMNVL  GR P+V  L  +L+ 
Sbjct: 301 ESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEVRFSMNMNVLIDGRTPKVCSLKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI-------------------- 403
           +L HRREVL RRS  RM+ ID R+E+L GL++A+LN+D +                    
Sbjct: 361 FLDHRREVLIRRSEHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDEEPKRALMAETWG 420

Query: 404 --IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                  +E            LTE Q +AILN+RLRSLR+LEE ++ +E D L AE+  +
Sbjct: 421 RKFKRATSEKDYVGPGAGPGELTEVQAEAILNMRLRSLRRLEEMELLAERDALTAERADL 480

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             L+ S  +QW +I  ++ E++++F K T  G RRT F E +   +    +AMIE+EPIT
Sbjct: 481 ADLVGSEPRQWERIGADLGEIRKLFGKWTVAGARRTQFAE-AGEVEEVPLEAMIEREPIT 539

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V+ S  GWIR++K H    S + FK+GD  +   HA TTDR+LL+ ++G+ YTL   +L 
Sbjct: 540 VICSKMGWIRAMKGHQPLGSEVKFKDGDGPRFMFHAETTDRLLLVGSNGRFYTLTGASLP 599

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG GE ++L++DL +  +I    ++    KLL+ SS G+ F+V   E++A TR GK  
Sbjct: 600 GGRGMGEPVRLMVDLPNEAEIADLIIWRPGEKLLLASSAGDGFVVPSEEVLAQTRAGKAV 659

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
           L +       +   + GDHVAVVG+NRKLL+F + ++PEM+RGKGVRLQ YKDGG+SD I
Sbjct: 660 LSMKDGVTTAVCRPIRGDHVAVVGQNRKLLVFPLSELPEMARGKGVRLQKYKDGGLSDAI 719

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            F++  GL+W D AGR   R+E DL  W G R G G + P+GFPR  +F
Sbjct: 720 TFELARGLSWKDPAGR--TRTETDLAEWTGARAGAGKMAPRGFPRDNRF 766


>gi|322385576|ref|ZP_08059220.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           cristatus ATCC 51100]
 gi|321270314|gb|EFX53230.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           cristatus ATCC 51100]
          Length = 816

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPMVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 359 VTRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVVAIIKEELDEVKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 592 GETIQTIINVQQDSSDNSYLFFTTRLGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + +DG         I EG   +
Sbjct: 652 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGDQVVGAGV-ITEGDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 750


>gi|325478817|gb|EGC81927.1| DNA gyrase, A subunit [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 814

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/756 (33%), Positives = 414/756 (54%), Gaps = 29/756 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L   +++ YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD     +
Sbjct: 4   DNNIINVDLEEKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD ++YD+LVRLAQ F  RYPL  GQGNFG+IDGD AAA RYTE
Sbjct: 64  KSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            +M+++A+ +L+ +++D VDF   ++EE+ EP V PS+FPNLL NG++GIAVGMAT++  
Sbjct: 124 VKMSKIAKEMLRDINKDTVDFMPNFDEEEMEPTVLPSRFPNLLVNGSNGIAVGMATNMAP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +A + NPEISIE+L + + GPDFPTG  I+  +  I ++Y+ GRG  ++R
Sbjct: 184 HNLGESIDACVAYMKNPEISIEELNKILPGPDFPTGAYIL-GKSGIKDAYQTGRGKVKLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A   +E   +    I+V+EIPYQV KSRLIEKIA+L+  K+I  + DIRDES      ++
Sbjct: 243 AVAKIEPFKKNRERIIVSEIPYQVNKSRLIEKIADLVKDKKIDGISDIRDESDRKGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  + +ET F +    L    +PQV+ L  +++ ++ H++EV+ 
Sbjct: 303 IEIKRDSNANIVLNNLYKYTQLETTFGIINLALVD-GIPQVLNLKELIEYYIDHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDA 430
           RR+SF +     R  I++GL+IA  NIDEII IIR+      +    F    LT+ Q  A
Sbjct: 362 RRTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEKFNLTDKQSQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  ++ +E   L      + S+LNS +     I  E+ E+K+ FS   
Sbjct: 422 ILDMQLKRLSGLEIDKLNAENKELEETISYLLSILNSEENLIKLIISEMEEIKDKFSD-- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+              + +IEKE + + ++N G+I+                ++A
Sbjct: 480 ---DRRSKIIPDEGE---IDIEELIEKEDVLLTLTNDGYIKRLPIDTYKVQNRGGKGIAA 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
            + KEGD +K     +T + +L  ++ GK Y+L    +     +  G AI  +++L   +
Sbjct: 534 GNTKEGDFIKKIKTTNTHEDLLFFTSLGKVYSLKTYEVPEGSRQSRGTAIINILNLESGE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I         +   ++++ +  G     E        + G   + +   +K+  V ++ 
Sbjct: 594 RITEMMTLSELNEDSQIVLQTKDGTIKKTEAENFTNIRKNGIIAISLKDGDKLISVRQID 653

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +  +    + F+   +  M R  +GVR     +G     +  K  +    +   
Sbjct: 654 KEEELIISTKKGMTIQFNSQDLRSMGRIAQGVRAIKLAEGDEVVSMNIK-GDETYLLVVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              + +  +        RGG G    K   ++GK +
Sbjct: 713 ENGFGKKTSFNNFKNQNRGGKGVKCHKVTDKTGKVV 748


>gi|167763108|ref|ZP_02435235.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC
           43183]
 gi|167699448|gb|EDS16027.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC
           43183]
          Length = 843

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/758 (30%), Positives = 392/758 (51%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACVAYIDNNDIDIEDLMTYVKAPDFPTGGYIY-GMSGVREAYMTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E       IVVTEIPY V K+ LI+ IA+L   K+I  + +  DES  +   
Sbjct: 241 MRAKAEI-ETSSTHDKIVVTEIPYGVNKAELIKSIADLANEKKIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVH-GRPRLLNLKDLIKYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF LTE Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ E+K  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIKTKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  +  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGSKGTETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  +  G        +     + G   + +  ++++  V    G
Sbjct: 599 RVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNG 658

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
           D  + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  T + 
Sbjct: 659 DNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPETETIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +  +        RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLV 756


>gi|331092117|ref|ZP_08340948.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402318|gb|EGG81889.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 826

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/771 (30%), Positives = 397/771 (51%), Gaps = 39/771 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MEDN---IFDKVHDVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   +++D VDF   ++E + EP V P++FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMELTADINKDTVDFVPNFDETEKEPAVLPARFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E+  A + +ID+      E +IE +L+ + GPDFPTG  I+     I 
Sbjct: 178 GMATNIPPHNLKEVINAVVKIIDDQIEETGETTIEDILQIVKGPDFPTGATIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D
Sbjct: 237 EAYRTGRGKIRVRAVTDIEPMQNGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D+S  +   +     R  + ++++  ++  + M+  F + M  L     P+VM L  +
Sbjct: 297 LSDQSNREGMRICIELRRDANANVILNQLYKHTQMQDTFGVIMLALV-NNEPRVMNLLDM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVM 417
           L  +L H+ EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR     +     +
Sbjct: 356 LNHYLKHQEEVVTRRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKTTQIAKEGL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++ F LTE Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K     I  
Sbjct: 416 IAAFDLTEVQAQAIVDMRLRALTGLEREKLETEYAELMKRIGELKAILADRKLLLGVIKE 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           EI  +++ +        RRT        +     + +I +E + + ++  G+I+ +    
Sbjct: 476 EIIVIRDKYGDE-----RRTAI---GFDEYDISMEDLIPREDVVITMTKLGYIKRMTVDT 527

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   E D ++      T   ++  +  G+ Y L A  +        G
Sbjct: 528 FKSQNRGGKGIKGMQTLEEDYIEDLFMTSTHHYVMFFTNTGRVYRLKAYEIPEAGRTARG 587

Query: 588 EAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            AI  L+ L   + I              L + + KG       ++     + G   + +
Sbjct: 588 TAIINLLQLMPEEKITAIIPIKEYVQGEYLFMATKKGLVKKTPITDYANVRKTGLAAITL 647

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             E+++  V     +  + +V +  + + F+   +    R   GVR  +   G   +V+ 
Sbjct: 648 REEDELIEVKATDNEKDIILVTKYGQCIRFNEKDVRSTGRTSMGVRGMNL--GDRDEVVG 705

Query: 703 FKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            ++  +G   +  + +   +           RGG G    K   ++G  + 
Sbjct: 706 MQLNTQGEHLLIVSEKGMGKRTEMSEFTSQNRGGKGVKCYKITEKTGNVVG 756



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 8/146 (5%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I+L++  G+       ++ S       ++ + +L    ++V   +      LL+VS KG 
Sbjct: 665 IILVTKYGQCIRFNEKDVRSTGRTSMGVRGM-NLGDRDEVVGMQLNTQGEHLLIVSEKGM 723

Query: 623 AFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
               E SE  +  R GK      +   +   +  V  V+ D  + ++     ++    + 
Sbjct: 724 GKRTEMSEFTSQNRGGKGVKCYKITEKTGN-VVGVKAVSEDNEIMIINTEGIIIRMECNS 782

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVIC 702
           I  + R   GV+L +  D      I 
Sbjct: 783 ISVLGRITSGVKLINLHDDEKVASIA 808


>gi|325696548|gb|EGD38438.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK160]
          Length = 826

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/760 (32%), Positives = 396/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTKIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDTSAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + +DG         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|290473791|ref|YP_003466665.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus bovienii
           SS-2004]
 gi|289173098|emb|CBJ79871.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus bovienii
           SS-2004]
          Length = 880

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/814 (32%), Positives = 407/814 (50%), Gaps = 81/814 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  ++KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKSYKKSARVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  ++++ V+F   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLEKETVNFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA ID+  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVVDGCLAYIDDENISIEGLMEYIPGPDFPTAA-IINGRRGIQEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  +E +   G   I+V EIPYQ+ K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKIYIRARAKIETDEKNGRETIIVNEIPYQINKARLIEKIAELVKDKRIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEVKRDAVAEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKLLNLKDILSAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A +NID  I +IR    P           
Sbjct: 355 INHRREVVTRRTIFELRKARERAHILEALAVALVNIDSAIELIRRASTPAEAKANLIAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVSAMLEQAGDDAARPEWLEPEYGIHDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +K+ ++ +     RRT   E S    
Sbjct: 475 LDEYRELLKLIGELLFILENPERLREVIREELLAIKDQYNDA-----RRTELTENSAD-- 527

Query: 508 ATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S++G+          + +      SA   KE D L+  L A+T
Sbjct: 528 -INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFLERLLVANT 586

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  S  GK Y +    L        G  I  L+ L   + I        Y+    +
Sbjct: 587 HDTILCFSNKGKMYWMKVYQLPEASRGARGRPIVNLLPLEQEERITAILPVREYEDGLNI 646

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
            + ++ G     + SE       G   +K+S  +++  V    G + V +     K++ F
Sbjct: 647 FMATASGTVKKTKLSEFSRPRSAGIIAVKLSDGDELIGVDLTDGSNEVMLFSAKGKVVRF 706

Query: 674 -------------SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
                         +  +  M R   GVR      G     +     EG   +      Y
Sbjct: 707 LEEDEETLEDGTIRVKGVRAMGRTAAGVRGIKLSAGDKVVSLIIPRGEGE-ILTVTENGY 765

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           R   G +  K   R+G  + +
Sbjct: 766 GKRTAQSEYPTKSRATQGVISIKVSERNGDVIGA 799


>gi|116754691|ref|YP_843809.1| DNA gyrase, A subunit [Methanosaeta thermophila PT]
 gi|116666142|gb|ABK15169.1| DNA gyrase subunit A [Methanosaeta thermophila PT]
          Length = 796

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/746 (32%), Positives = 392/746 (52%), Gaps = 17/746 (2%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+ F   +KKSAR
Sbjct: 4   IDVDVTEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGVTFDQPYKKSAR 63

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+V+GK HPHGD ++YD++VR+AQ F  RY LI GQGNFG++DGD  AA RYTE R++
Sbjct: 64  IVGDVMGKYHPHGDVAIYDTMVRMAQDFSMRYTLIDGQGNFGSVDGDPPAAMRYTEVRLS 123

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  +L  +++D VDF   Y+    EP V PS+ PNLL NG++GIAVGMAT+IP HN++
Sbjct: 124 KIAGEMLADIEKDTVDFVPNYDGSLKEPTVLPSRLPNLLVNGSTGIAVGMATNIPPHNLR 183

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+  A + LI+NP+ S+  L+ +I GPDFPTGG IV  R  I  +Y  GRG   +RAR  
Sbjct: 184 EVVYALIHLIENPDASVTDLMNFIRGPDFPTGGYIV-GRSGIESAYSTGRGTITIRARSE 242

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +EE  RGS  I+ TE+PYQV K++++E IAEL+ A R+  + +IRDES  +   ++    
Sbjct: 243 IEEGRRGS-RIIFTELPYQVNKAKVVEDIAELVKAGRVDGISEIRDESDREGIRLVVELK 301

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           + ++P +++  +   + +ET + +   VL     P+ + L   L++++ +R EV+ RR+ 
Sbjct: 302 QGVNPQVVLNQLHKHTQLETTYGIINLVLVD-GQPRTLTLKETLEQYINYRAEVIERRTR 360

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNL 434
           F ++  ++R  IL G+LIA  +IDE+IA+IR        + ++++RF L+E Q  AIL++
Sbjct: 361 FELEQAEKRAHILAGILIALRDIDEVIALIRGSPSPSDARNLLMNRFGLSEEQARAILDM 420

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE+ ++ SE   L +   ++  +L S  +  + I  E+RE+ EI+        
Sbjct: 421 RLQRLTGLEQEKVASEARELESTIARLKGILASRTEVLDIIKNELRELDEIYGDDRRTEI 480

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
             +             + A+I      +        R  +           K  D +   
Sbjct: 481 LESVESVRPEDLIQDEEVAVIITNNGYIKRQPLSVYRMQRRGGKGSIGAETKSEDFVTDI 540

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFVYDS-- 610
             A T D +++ +  GKA+ L    +        G  I  L+ L  N+ I  A   +S  
Sbjct: 541 FTASTLDYLMIFTDRGKAHWLRVYEIPMVSKVARGRPIASLLQLEENERITEAIPVESFG 600

Query: 611 -TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               +++ +  G+             R G   + +   + +       G   + V  +  
Sbjct: 601 TDEYIVLATRNGSIVKTPLRAFSNPRRGGIKAVNLR-GDSLVAARLTDGSRELIVATKKG 659

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           K + F    +    RG  GV+  +  +G     +   + EG T      + Y +      
Sbjct: 660 KAIRFHESDVRSSGRGSMGVKAINLSEGDELISMDV-VKEGETLFTITTQGYGKRTELSE 718

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLSS 753
             L +RGG G        R G  +++
Sbjct: 719 YPLQRRGGKGVKNIDT--RRGDVVAA 742



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 3/112 (2%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EEKMK 651
           I+L+   ++++  V      L  ++++G     E SE     R GK    + +   + + 
Sbjct: 682 INLSEGDELISMDVVKEGETLFTITTQGYGKRTELSEYPLQRRGGKGVKNIDTRRGDVVA 741

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
            +     D + +  +   ++  +   +    R  +GV++   K G     + 
Sbjct: 742 AITVSDDDGLLITTKEGVMIRIAASDVRVQGRATQGVKIMDVKPGDEISDVA 793


>gi|167619125|ref|ZP_02387756.1| DNA gyrase subunit A [Burkholderia thailandensis Bt4]
          Length = 850

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/782 (30%), Positives = 377/782 (48%), Gaps = 56/782 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM Q+   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAQIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NP+ S+++L+E I  PDFPT G I+     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAG-IIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L     P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVD-NQPKLLNLREILQCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN----------------------------------- 409
            R  +L+GL +A  NIDE IAII+                                    
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAEAENAAA 418

Query: 410 -----------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  VK  F  +             +          +    
Sbjct: 479 ADLLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ K       A   KE D ++    A+T D IL  S  G+ Y +   
Sbjct: 539 AGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVY 598

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G  I  +  L   + I        + +   + + ++ G            
Sbjct: 599 EVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTTALGTVKKTPLEAFSR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +KG   + +   + +       G   V +  +  K + F  + +  M R  +GVR   
Sbjct: 659 PMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQ 718

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             DG     +     E  + + +    Y +           RG  G +  +   R+G+ +
Sbjct: 719 LDDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVV 778

Query: 752 SS 753
           ++
Sbjct: 779 AA 780



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +   +
Sbjct: 662 KGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLDD 721

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I           +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 722 GQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAAT 781

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V   D + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 782 LVDTEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 824


>gi|319939082|ref|ZP_08013446.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV]
 gi|319812132|gb|EFW08398.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV]
          Length = 815

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 394/760 (51%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD  AA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++   L+E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FIIEVKRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +         ++R+ L+E Q 
Sbjct: 359 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMARYKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+     +  +L   ++    I  E+ E+K  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLMKLIADLADILAKPERVVAIIKEELEEIKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          +     +
Sbjct: 479 E-----RRTEL--MVGEVLSLEDEDLIEETDVLITLSNKGYIKRLNQDEFTAQRRGGRGI 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T       +D    L   +  G       +E     + G   L +  E+++  V 
Sbjct: 592 GETIQTIINVQAEHDDNSYLFFTTRYGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
              G   + +  +    + F+  Q+  M R   GVR  + + G         I +    +
Sbjct: 652 LTNGQADIIIGTKMGYAVRFNESQVRNMGRAATGVRGVNLRAGDHVVGASV-ISDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 VITEKGYGKRTLASEYATKSRGGKGMKTANITEKNGPLAG 750



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 5/127 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK---TFLKVSSEEKM 650
           ++L     +V A V     ++LV++ KG       SE    +R GK   T         +
Sbjct: 689 VNLRAGDHVVGASVISDDQEVLVITEKGYGKRTLASEYATKSRGGKGMKTANITEKNGPL 748

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             ++ V GD  + ++     ++  ++  I +  R   GV++     G           E 
Sbjct: 749 AGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKGAQIVTFTSVAAEN 808

Query: 709 LTWIDSA 715
              +D  
Sbjct: 809 EKEVDEG 815


>gi|332360261|gb|EGJ38074.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK355]
          Length = 826

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/760 (32%), Positives = 398/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +IDNPE +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVIDNPEATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVITIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GENIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + ++G         I EG   +
Sbjct: 659 LTDGVADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLREGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|260588812|ref|ZP_05854725.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583]
 gi|260540591|gb|EEX21160.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583]
          Length = 828

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/761 (30%), Positives = 383/761 (50%), Gaps = 34/761 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V L+  +EE Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKIQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ +DF   ++  + EP V PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++EI  A + +ID       E +I++LL  + GPDFPTG  I+     I E+YR GRG 
Sbjct: 187 NLREIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATIL-GTRGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DI D S  + 
Sbjct: 246 IRVRAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISDHSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R  + ++++  ++  + M+  F + M  L  G  P+VM L  +L+ +LAH+ 
Sbjct: 306 MRICITLRRDANANVILNRLYKHTQMQDTFGVIMLALV-GNTPKVMSLLEMLEHYLAHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
           EV+ RR+ + +   + R  I+ GLL A   ID+II IIR+    +      +  F  +E 
Sbjct: 365 EVVTRRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLMDTFDFSEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q   I+N+RL  L  +E  +++ E   L  +  ++ ++L+        I  EI  + E +
Sbjct: 425 QAQEIVNMRLYQLTGMERERLEKEFQELEIKIRELKAILSDRNLLLRVIRQEILAIAEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSV 538
                   RRT        +     + +I KE   + ++  G+I+ +             
Sbjct: 485 GD-----DRRTAI---GYDEFDISMEDLIPKENTVIAMTKLGYIKRMTVDNFRSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +  +   + D ++  L   T   ++  ++ G+ Y + A  +        G AI  L+ L
Sbjct: 537 GIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKAYEIPEASRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        +     L + +  G        +     + G   + +  ++++  V
Sbjct: 597 QPEEKITAVIPINEFKKGNYLFMATKNGLVKKTPIEDYENVRKTGLAAIALREDDELIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
                   + +V +  + + F+   +    R   GVR  +  +      +    C+G   
Sbjct: 657 KFTDNKKDIILVTKFGQCIRFNETDVRSTGRVSMGVRGINLLEEDEVIGMQLT-CQGDYL 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 716 LIVSEKGLGKRTSISEFTRQNRGGKGVKCYKITEKTGNVIG 756



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 8/184 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L+A+  +E D L           I+L++  G+       ++ S       ++ +  L  
Sbjct: 641 GLAAIALREDDELIEVKFTDNKKDIILVTKFGQCIRFNETDVRSTGRVSMGVRGINLLEE 700

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVV 654
           ++ I           LL+VS KG       SE     R GK      +   +   +  V 
Sbjct: 701 DEVIGMQLTCQGD-YLLIVSEKGLGKRTSISEFTRQNRGGKGVKCYKITEKTGN-VIGVK 758

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
            V   + + ++     ++    + I  + R   GV+L   KD      I     +     
Sbjct: 759 AVNSENEIMMITTEGIIIRLECEGISILGRITSGVKLMDLKDDITVASIAKVREKEEEIS 818

Query: 713 DSAG 716
           ++  
Sbjct: 819 ENTE 822


>gi|258406591|ref|YP_003199333.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692]
 gi|257798818|gb|ACV69755.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692]
          Length = 809

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/756 (31%), Positives = 406/756 (53%), Gaps = 28/756 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++++ +   +++ YL Y+LS I  RA+PD+RDG KPVHRRI++AM ++G  +   +KKSA
Sbjct: 2   LQSIHIEEEIKKSYLEYSLSVIIGRALPDVRDGLKPVHRRILYAMHDLGNTYNRPYKKSA 61

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD+LVR+AQ F  R+PL+ GQGNFG++DGD+ AA RYTE+RM
Sbjct: 62  RIVGDVIGKYHPHGDAAVYDALVRMAQDFNMRHPLVDGQGNFGSLDGDAPAAMRYTESRM 121

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++   L  +D+  V+FR  Y+    EP V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 122 ARISGEFLADIDKQTVNFRANYDNTLHEPEVLPTKVPNLLVNGASGIAVGMATNIPPHNL 181

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A LAL+D+P + +++LL YI GPDFPT   ++  R+ + ++Y  GRG  ++R+R 
Sbjct: 182 GEVTDALLALLDDPSLGLDQLLHYIKGPDFPTAA-LMYGRQGMRQAYATGRGSIKLRSRL 240

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VEE  +G   IV+TEIP+ + K+ L+EKIA+L+   ++  + D+RDES  +   ++   
Sbjct: 241 HVEESKKGRESIVITEIPFALNKASLVEKIAQLVNEGKLEGISDLRDESDRNGIRIVIDL 300

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R+   D+++ +++  + +ET + +N+  +     PQ++ L  IL+ +L HR+EV+ RRS
Sbjct: 301 KRNTLSDIVINTLYKYTALETSYGINLLAVV-NNRPQLLSLKQILELFLEHRKEVILRRS 359

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILN 433
            + +   ++R  IL+GL IA  NIDE++ +IR    P       + RF L+E Q  AIL+
Sbjct: 360 RYDLDKAEKRAHILEGLRIALDNIDEVVRLIRASATPAEAKAGLMQRFELSEVQSQAILD 419

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  ++  E   +L   E + S++   +     +  E++E+++ F+      
Sbjct: 420 MRLHRLTNLERDKLLEEYRAVLERIEYLKSIIEQSEVLRGVVRDELQELRKTFASP---- 475

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   E          + +I  E + + ++  G+I+          K     +S  + 
Sbjct: 476 -RRTEILE--SDPNEIDIEDLIPDEEVVITLTRNGYIKRTPLSAYQQQKRGGKGVSGANV 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
            + D +   +       +LL +  G+ + L    +        G  I  L+ L+  + + 
Sbjct: 533 AQKDFVTDLMTGTNHQYLLLFTNKGRMHQLKVYQIPEGRRTARGTHIANLLPLDKEEYVA 592

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
           T      +D+    L  + KG                G   + +   +++  V +V  + 
Sbjct: 593 TVLCMKDFDANHSFLFATKKGMVKRSAVHLYRNYRPHGLIAVNLRDGDELIAVREVDEES 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK-DGGISDVICFKICEGLTWIDSAGR 717
            + ++  +   + F+  ++  M RG  GV+  + + +  +   +          +  + +
Sbjct: 653 EIFLITHHGVAIRFACSEVRSMGRGAAGVKGIALRQEDAVVSCVIINGDGRDQLLTVSEQ 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RGG G +  +   ++G  L +
Sbjct: 713 GYGKRTAIDYYRQQSRGGKGIINMRLTSKTGGVLGA 748


>gi|152990238|ref|YP_001355960.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2]
 gi|151422099|dbj|BAF69603.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2]
          Length = 820

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/753 (33%), Positives = 420/753 (55%), Gaps = 31/753 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            ++++ + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+E+GL   AA+K
Sbjct: 8   NQDIQEIDIEESVKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSRAAYK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VY++LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYTE
Sbjct: 68  KSARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT +AE +L+ +D+D VDF   Y++  SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 ARMTPIAEELLRDIDKDTVDFIPNYDDTLSEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H + E+ +A + LI+NP+  + +++E+I GPDFPTGG I+  ++ I+ +Y+ GRG  +VR
Sbjct: 188 HRLDELIDALVLLIENPKAELHEVMEHIQGPDFPTGG-IIFGKQGILNAYKTGRGRIKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+V      IV+ EIPYQV K+RLIE+IA+++  K++  + +IRDES  +   V+
Sbjct: 247 AKTHIEKVK-NREVIVIDEIPYQVNKARLIEQIAQMVREKQLEGISEIRDESDREGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +  D+++ +++  + ME  F + +  +   + P+V  L  +L  +L HRR ++ 
Sbjct: 306 IELKKDVMSDIILNNLYKSTQMEVTFGIILLAIV-NKEPKVFTLLELLHLFLNHRRTIVI 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDA 430
           RR+ + ++    R  IL+GLL A  NIDE+IA I+  +        ++ +F LTE Q +A
Sbjct: 365 RRTIYELEKAKARAHILEGLLKALDNIDEVIATIKASEDTPTARVNLMEKFELTEIQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  ++++E   L+ E E++ ++L S ++    I  E+ E+KE F+   
Sbjct: 425 ILDMKLQRLTGLEREKLENEYKELMEEIERLSAILKSEEKLNEIIKTELLEIKEKFTTP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               R T   E   + +    + +I  EP+ V I++RG+I+          K      +A
Sbjct: 484 ----RLTEIVE---SYEEIDIEDLIPNEPMVVTITHRGYIKRVPLKQYEKQKRGGKGKTA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
           +   E D ++    ++T D ++ ++  G+ Y L    +        G+A+  L+ L  ++
Sbjct: 537 VTTYEDDFIEDFFISNTHDTLMFVTDRGQLYWLKVYKIPEAGRTAKGKAVVNLLQLQPDE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
            I        +     L   +  G       +E      KG   + +   +++     V 
Sbjct: 597 KIKAIIPTTDFSEDKSLAFFTKNGIVKRTNLAEFSNIRSKGVRAITLDESDELVEAKIVK 656

Query: 657 -TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWID 713
                + ++ +    + F +  + EM R  +GV    +K +G           E    + 
Sbjct: 657 PETKWLFIITKKGMCIRFPVHDVREMGRSARGVTGIRFKYEGDYVVGAETIAQEEQELLT 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            + +   +           RGG G +  K   +
Sbjct: 717 VSEKGIGKRTQASEYREQSRGGKGVIAMKLTHK 749


>gi|121884|sp|P14829|GYRA_KLEOX RecName: Full=DNA gyrase subunit A
 gi|43808|emb|CAA34724.1| unnamed protein product [Klebsiella pneumoniae]
          Length = 876

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/792 (32%), Positives = 388/792 (48%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+ GIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSFGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA +++ EISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGRLAYVEDEEISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   + AR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYICARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R     +++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGRVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKEIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+   ++    R +IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTILALRKARDRADILEALSIALANIDPIIELIRRAPTPAEAKAGLIARS 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      V   ++ LTE Q  AIL+LRL+ L  LE  ++ 
Sbjct: 415 WDLGNVSAMLEAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL +  ++  +L S  +    I  E+  V+E F  +        +          
Sbjct: 475 DEYKELLEQIAELLHILGSADRLMEVIREELELVREQFGDARRTDITANSVDINIEDLIT 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D +   L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHEGYVKYQPVNDYEAQRRGGKGKSAPRIKEEDFIDRLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y +    +        G  I  L+ L  N+          Y+    + + ++ G  
Sbjct: 595 RGRLYWMKVYQVPEASRGARGRPIVNLLPLEANERYTAILPVREYEEGVNVFMATASGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                 E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 655 KKTPADEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDDVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR            +     EG   + +    Y +           R   G +  
Sbjct: 715 RTATGVRGIKLAGEDKVVSLIVPRGEG-RILTATENGYRKRTAVAEYPTKSRATQGVISI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVTERNGSVVGA 785



 Score = 41.7 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 62/223 (27%), Gaps = 14/223 (6%)

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
                   I  +    +     +A     VK+  +      R               +  
Sbjct: 625 EANERYTAILPVREYEEGVNVFMATASGTVKKTPADEFSRPRSAGIIAVNLNEGDELIGV 684

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRIL 564
            +   +   ++ S  G +   K   V         +  +     D +   +      RIL
Sbjct: 685 DLTSGQDEVMLFSAAGKVVRFKEDDVRAMGRTATGVRGIKLAGEDKVVSLIVPRGEGRIL 744

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
             + +G           +     + +  +     N  +V A   D   ++++++  G   
Sbjct: 745 TATENGYRKRTAVAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLV 804

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
            +  SE+    R   G   ++ + +E +         V  + +
Sbjct: 805 RIRVSEVSIVGRNTQGVILIRTAEDENVVALQRVAEPVDDEEL 847


>gi|327469994|gb|EGF15458.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK330]
          Length = 826

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + +DG         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|81427622|ref|YP_394619.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K]
 gi|78609261|emb|CAI54308.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K]
          Length = 857

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/759 (30%), Positives = 385/759 (50%), Gaps = 16/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G
Sbjct: 1   MANENGQ-DGRIENVNLSKTMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD ++Y+++VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 60  VTPEKPYKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQEFSYRYMLVDGHGNFGSVDGDG 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ +D+   Y+E + EP V P++FPNLL NG +GIAV
Sbjct: 120 AAAMRYTEARMSKMAVEMLRDINKNTIDYVPNYDESEREPAVLPARFPNLLVNGATGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+  A   L+DNP+ +   L++ + GPDFPTGG +V  +  I  +Y  
Sbjct: 180 GMTTNIPPHNLAEVISAIHILMDNPDATTADLMDALPGPDFPTGG-LVMGKSGIRHAYES 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   +RA+  VE    G   I+VTEIPY V K++L+E+IAEL   KR+  + D+ DES
Sbjct: 239 GKGTITLRAKVDVEVKKNGRERIIVTEIPYMVNKAKLVERIAELARDKRLEGITDLNDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R +   +++ +++ L+ ++T F  NM  +     P+V+ L  IL+ +L
Sbjct: 299 DRDGMRIVIDVRRDMSASVILNNLYKLTPLQTSFSFNMVAIV-NGAPKVLSLKSILEHYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H+ EV+ RR+ F ++  + R  IL GL IA  +ID II IIR+           + R+ 
Sbjct: 358 VHQEEVIRRRTEFDLKKAEARAHILAGLRIALDHIDAIIQIIRSSKTGDTAKVLLMERYD 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  ++++E +NL+A    +  +L   ++    I  E+ E+
Sbjct: 418 LSDKQAQAILDMRLVRLTGLERDKVENEYNNLMALITDLKDILAKPERIKKIIYDELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F               +   D    +  +I       +        +        + 
Sbjct: 478 QSKFGDKRRTELLVGEVLSIEDEDLIEEEDVVIALTHNGYIKRLPASEFKVQNRGGRGIQ 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D ++  +   T + +L  +  GK Y      +       +   I  L+ +N +
Sbjct: 538 GMGVHDDDFIEHLISTSTHEVLLFFTNTGKVYRAKGYEIPEYGRTAKGIPIINLLGINSD 597

Query: 600 QDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + + T             L  ++  G        E       G   L +  ++++  V+ 
Sbjct: 598 ERVQTVVNIGKEVKPEQALFFITRLGTVKRTAVGEFANIRSNGLKALTLHEDDELSNVLM 657

Query: 656 VTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G   + +   N   + FS   +  M R   GVR    ++G    V    +  G   + 
Sbjct: 658 TDGQQNIFIGTHNGYAVSFSETAVRSMGRTAAGVRGIRLREGDYV-VGSDLLIPGQEILV 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +        +  RGG G        ++G    
Sbjct: 717 ISEKGYGKRTAVSDYPIKGRGGKGVKTANITEKNGPLAG 755



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 6/179 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  L AL   E D L   L       I + + +G A +     + S      A    
Sbjct: 635 NIRSNGLKALTLHEDDELSNVLMTDGQQNIFIGTHNGYAVSFSETAVRSMGRTA-AGVRG 693

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V + +     ++LV+S KG       S+     R GK      +   +   
Sbjct: 694 IRLREGDYVVGSDLLIPGQEILVISEKGYGKRTAVSDYPIKGRGGKGVKTANITEKNGPL 753

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
             +      + + ++ +   L+ F +  + +  R   GVRL    D      +     E
Sbjct: 754 AGIAAVTGEEDILLITDTGVLIRFKVANVSQTGRATLGVRLIRVDDEAKVATMATVEAE 812


>gi|160889572|ref|ZP_02070575.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492]
 gi|317480064|ref|ZP_07939175.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36]
 gi|156861089|gb|EDO54520.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492]
 gi|316903741|gb|EFV25584.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36]
          Length = 842

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/758 (30%), Positives = 395/758 (52%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++  ++++ VD ++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A I+N +I IE+L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  + E G     IVVTEIPY V K+ LI+ IA+L   K+I  + +  DES  +   
Sbjct: 241 MRARAEI-ETGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR +V
Sbjct: 300 IVIDVKRDANASIVLNKLYKMTMLQTSFGVNNVALVH-GRPRLLNLKDLIKHFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF L+E Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFQLSEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  +  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGSKGTETRDA 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  +  G        +     + G   + +  ++++  V    G
Sbjct: 599 RVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNG 658

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
           D  + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  T + 
Sbjct: 659 DNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPEAETIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +  +        RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLV 756


>gi|325687501|gb|EGD29522.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK72]
          Length = 826

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   I+VTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDSEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----NRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + ++G         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLREGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|226326151|ref|ZP_03801669.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758]
 gi|225205693|gb|EEG88047.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758]
          Length = 844

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/771 (30%), Positives = 398/771 (51%), Gaps = 37/771 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V ++  +EE Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MEDN---IFDKVHEVDMKKTMEEFYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYILVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   +++D VDF   ++E + EP V PS+FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMEMTADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E+  A + +ID+      E +IE+++E I GPDFPTG  I+     I 
Sbjct: 178 GMATNIPPHNLREVIGAVVKIIDDQIEDKDETTIEEIMEIIKGPDFPTGATIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D
Sbjct: 237 EAYRTGRGKIRVRAVSNIEPMQNGKHRIVVTELPYMVNKARLIEKIAELVRDKKIDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D+S+ +   V     R ++P++++  ++  + ++  F + M  L     P+VM L  I
Sbjct: 297 LSDQSSREGMRVCIELRRDVNPNVVLNQLYKHTQLQDTFGVIMLALV-NNEPKVMSLLEI 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVM 417
           L  +L H+ +V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR     +     +
Sbjct: 356 LNHYLKHQEDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIKIIRGSKTVQIAKAEL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +SRF+L++ Q  AI+++RLR+L  LE  ++++E   L  +  +  ++L   K     I  
Sbjct: 416 MSRFNLSDAQSQAIVDMRLRALTGLEREKLETEYAELEKKIAEYKAILADRKLLLGVIKK 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           EI  + E +        RRT        +     + +I +E + + ++  G+I+ +    
Sbjct: 476 EILVISEKYGD-----DRRTAI---GFDEYDISTEDLIPREDVVITMTKMGYIKRMSNDT 527

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   + D ++     +T   I+  +  G+ Y L    +        G
Sbjct: 528 FKSQNRGGKGIKGMQTLDEDYVEELFMTNTHQYIMFFTNTGRCYRLKGYEIPEAGRTSRG 587

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            AI  ++ L  ++ I        +     L + + KG        +     + G   + +
Sbjct: 588 TAIINILQLQPDEKITAMIPIKDFKEGDYLFMATKKGLVKKTPILDYANVRKTGLAAITL 647

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             ++++  V     +  V +V +  + + F    +    R   GVR  +  D      + 
Sbjct: 648 REDDELIEVKITDDERDVILVTQYGQCIRFHESDVRSTGRTSMGVRGMNLSDRDEVVAMQ 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +G   +  + +   +           RGG G    K   ++G  + +
Sbjct: 708 L-DAQGEELLIVSEKGMGKRTRMEEFTAQNRGGKGVKCYKITEKTGNVVGA 757



 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++L++  G+       ++ S       ++ + +L+   ++V   +     +LL+VS KG 
Sbjct: 665 VILVTQYGQCIRFHESDVRSTGRTSMGVRGM-NLSDRDEVVAMQLDAQGEELLIVSEKGM 723

Query: 623 AFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                  E  A  R GK      +   +   +        D + ++  +  ++      I
Sbjct: 724 GKRTRMEEFTAQNRGGKGVKCYKITEKTGNVVGAKAVGPDDEIMIINTDGIVIRMECAGI 783

Query: 679 PEMSR-GKGVRLQSYKDGGISDVIC 702
             + R   GV+L + K+      I 
Sbjct: 784 SVLGRITSGVKLINLKEHEEVASIA 808


>gi|90424143|ref|YP_532513.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB18]
 gi|90106157|gb|ABD88194.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB18]
          Length = 751

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/735 (56%), Positives = 547/735 (74%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKS
Sbjct: 12  EIHDVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEAR
Sbjct: 72  AKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNAAAYRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L G+DED V FR  Y+ +  EP+V P  FPNLLANG  GIAVGMAT+IP HN
Sbjct: 132 MTDVARLLLDGIDEDGVAFRANYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATAIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LI+ P+   + LL+++ GPDFPTGG+I++SRESI E+Y  GRG FR RA+
Sbjct: 192 AAELCDAALHLIEKPDAKSKTLLKWVKGPDFPTGGVIIDSRESIAEAYTTGRGSFRTRAK 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E+  RG+W + +TEIP+ VQKSRLIEKIAEL+  K++PL+ D+RDESAED+R+V+ P
Sbjct: 252 WHQEDGARGTWVVAITEIPWLVQKSRLIEKIAELLNEKKLPLVGDVRDESAEDIRVVIEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++DP+LLMES+F L+++E++ PLN+NVL  GR+P+V+ L   L+EWL H R+VL RR
Sbjct: 312 KSRAVDPELLMESLFRLTELESKIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            S+R   I+ R+E+L G LIAYLNID++I IIR ED+PKPV++  F+LT+ Q +AILN+R
Sbjct: 372 CSYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTDIQAEAILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE++I++E  NL AE + I+++L S  +QW ++A ++R+V+E+F   T LG+R
Sbjct: 432 LRSLRKLEEFEIRTEDKNLRAELKGINAILKSETEQWAKVAEQVRKVREMFGPKTALGKR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L FK  D L  A 
Sbjct: 492 RTMFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVADLSGLTFKTDDKLGQAF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A TT ++LL +T+G+ Y L    L  GRGHGE I++ IDL+ +  IV  FV+    K L
Sbjct: 552 FAETTSKLLLFATNGRFYALDVAKLPGGRGHGEPIRMFIDLDQDAAIVALFVHTGGRKFL 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V S  G  FIV E + + NTRKGK  L V    + + V  V+GD VAV+GENRKLLIF++
Sbjct: 612 VASHDGQGFIVNEDDCVGNTRKGKQILNVEMPNEARAVCTVSGDSVAVIGENRKLLIFAL 671

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           DQ+PEM+RG+GVRLQ YKDGG+SD+  F   +G +W DSAGR ++ S  +L  W G R  
Sbjct: 672 DQVPEMARGRGVRLQKYKDGGLSDIATFTAKDGFSWRDSAGREFSASIKELAEWRGNRAD 731

Query: 736 VGSLVPKGFPRSGKF 750
            G + PKGFP+S KF
Sbjct: 732 AGRMPPKGFPKSNKF 746


>gi|161830072|ref|YP_001596456.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331]
 gi|161761939|gb|ABX77581.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331]
          Length = 848

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/780 (34%), Positives = 412/780 (52%), Gaps = 63/780 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+    KKSARIVG+VIGK
Sbjct: 17  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE R+++ A  ++ 
Sbjct: 77  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++++E+L+ +I GPDFPT G I+  R  IV++Y+ GRG   VRA+  +E    G 
Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAG-IINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVV E+PYQV K+RL+EKI EL+  KRI  +  +RDES +    ++   +R  + +++
Sbjct: 256 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 315

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L     P+V+ L  +L  +L HRREV+ RR+ F ++    
Sbjct: 316 LNNLYAQTQLQTVFGINMVALD-NGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 374

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP-------------------------------- 413
           R  IL+GL +A  NIDE+IA+I+    P                                
Sbjct: 375 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTQPD 434

Query: 414 -----KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                  +    + L+  Q  AIL+LRL  L  LE  +I+ E   ++ + E++ ++++  
Sbjct: 435 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 494

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  E+  VKE F        RRT   +          + +I +E   V +S+ G
Sbjct: 495 DKLHEVIREELIAVKEQFGDE-----RRTVIID---DHSDLTHEDLIPEEHRVVTLSHEG 546

Query: 529 W--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +         ++         A   KE D +K  L A++ D IL  ST GK Y L    +
Sbjct: 547 YIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQV 606

Query: 581 LS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
                   G  I  L+ L  ++ I        YD +  + + +++G    V  +E     
Sbjct: 607 PQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPR 666

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
            KGK  L ++  +++  V    G   + +V +  K + F   ++ EM R  +GVR    K
Sbjct: 667 TKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKLK 726

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  +     +G   + +    Y +           RGG G +  +   R+GK +S+
Sbjct: 727 AKQNVIALIVVKPKG-NILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSA 785



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 6/179 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  +    AL   EGD L           I+L++  GKA       +         ++  
Sbjct: 664 QPRTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRG- 722

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEK 649
           I L   Q+++   V      +L  +  G        +  +  R G+  + +     + + 
Sbjct: 723 IKLKAKQNVIALIVVKPKGNILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKV 782

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +        D V ++ +   L+   +++I +M R  +GVRL       +   +     E
Sbjct: 783 VSAAQVFDDDDVLLISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAE 841


>gi|261855937|ref|YP_003263220.1| DNA gyrase subunit alpha [Halothiobacillus neapolitanus c2]
 gi|261836406|gb|ACX96173.1| DNA gyrase, A subunit [Halothiobacillus neapolitanus c2]
          Length = 864

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/789 (30%), Positives = 385/789 (48%), Gaps = 50/789 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +   + +  V+L   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+  
Sbjct: 2   SEFAQEIFKVNLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD+LVR+AQ F  RY LI GQGNFG++DGD+ AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDALVRMAQNFSMRYMLIDGQGNFGSVDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +VA  +   ++++ VDF D Y+  +SEP VFP+++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKVAHELQADLEKETVDFIDNYDGSESEPSVFPARYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI  A +ALID+P+   E LL ++ GPDFPT G I+     I E+Y  GRG  
Sbjct: 182 IPPHNLTEILNATIALIDDPDTDDETLLSHVPGPDFPTAG-IINGAAGIREAYLTGRGRV 240

Query: 251 RVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   EE  R G   I+VTE+PYQV K+RLIE+IAEL+  K+I  + ++RDES +D 
Sbjct: 241 VMRARTHFEEDDRAGKAIIIVTELPYQVNKARLIERIAELVREKKIEGITELRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   PD+++ +++  + M++ F +NM  +  G  P+ + L  IL  +L HRR
Sbjct: 301 MRIVIELRRGELPDVMLNNLYQQTQMQSVFGINMVAIV-GGQPRTLGLRDILTVFLRHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------- 415
           EV+ RR+ + ++    R  IL+GL +A  NID +IA+I+                     
Sbjct: 360 EVVTRRTIYDLRKARERAHILEGLAVALANIDAMIALIKAAPTSNEARTALMAQNWDSGL 419

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q  AIL +RL  L  LE+ +I  E 
Sbjct: 420 VHALLERADAAASRPESLTADFGLQPDRSYRLSQEQAQAILEMRLNRLTGLEQDKIVEEY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +LL +   +  +L S  +    I  E+  + E F  +                  A   
Sbjct: 480 RSLLEKIIDLLDILRSESRLMQVIRDELVAMIEEFGDARRTEIVFDYEDLSIEDLIAEED 539

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + +       +   +    +S +      S+   K+ D ++  + A T    L+ +  G+
Sbjct: 540 RVVTLSREGYIKTQSLSEYQSQRRGGRGKSSTRMKDEDVIEQLMVASTHAWALMFTNLGR 599

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y      L        G  +  ++ L   + +        +     +   ++ G     
Sbjct: 600 VYWRKVYQLPQGARGARGRPVVNILPLQEGERVNALLPVREFVDDHYIFFATATGQVKKT 659

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK 685
              +     + G   + +  ++++       G   + +     K + F+   +  M R  
Sbjct: 660 PLVDFSRPRQAGIIAIDLRDDDRLVGARLTDGSRELMLFSNAGKSIRFAEADVRSMGRTA 719

Query: 686 -GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            GVR     +  +  V+   +      + +    Y +        L  RGG G +  +  
Sbjct: 720 GGVRGIRMDE--MQRVVSLLVVGEGQVLTATEHGYGKRTPIDDFPLQGRGGQGVIAIQTS 777

Query: 745 PRSGKFLSS 753
            R+G  + +
Sbjct: 778 ERNGALVGA 786



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 11/156 (7%)

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +L S  GK+      ++ S           I ++  Q +V+  V     ++L  +  G  
Sbjct: 696 MLFSNAGKSIRFAEADVRSMGRTA-GGVRGIRMDEMQRVVSLLVV-GEGQVLTATEHGYG 753

Query: 624 FIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
                 +     R G+  + +     +   +   +    D V ++ +   L+   I QI 
Sbjct: 754 KRTPIDDFPLQGRGGQGVIAIQTSERNGALVGAALVQDEDEVILISDAGTLVRTEISQIS 813

Query: 680 EMSR-GKGVRLQSYKDGG----ISDVICFKICEGLT 710
            +SR  +GV L    D      ++ V    +     
Sbjct: 814 SVSRNTQGVILIRLSDDEKLVQLAAVSAMSVDSDAD 849


>gi|326406661|gb|ADZ63732.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis CV56]
          Length = 836

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/753 (32%), Positives = 385/753 (51%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G     
Sbjct: 7   NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             KKSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA R
Sbjct: 67  PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDRAAAMR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+
Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A   L++NPE S+  L+  I GPDFPTG  +V  +  I  +Y  G+G  
Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGA-LVMGKSGIRRAYETGKGSI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  +  
Sbjct: 246 TLRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGI 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R L   +++ ++F L+ ++T F  NM  +    +P+++ L  IL +++ H+ E
Sbjct: 306 RVVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEK-GIPKILSLKEILVDYIEHQIE 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQ 427
           V+ RR++F     + R  IL+GL IA  NID II IIR          +      L+E Q
Sbjct: 365 VVERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+
Sbjct: 425 SQAILDMRLRRLTGLERDKIEAEYQDLVALIADLADILAKPERVKKIIREELEEVKRKFA 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFK 546
                         +   D    +  +I       +        R+       +  +   
Sbjct: 485 DKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRGVQGMGMS 544

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           + D ++  +   T D +L  +  G+ Y +    +       +   I  L+ L+  + I T
Sbjct: 545 DDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLDDGEKIAT 604

Query: 605 AFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
               D       L   +  G       S+       G   LK+   +++  V++ +G D 
Sbjct: 605 IINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDE 664

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +       + F    + +M R   GV+  + ++G    V   +I +    +  +    
Sbjct: 665 VIIGTHLGYSVRFKGAVVRDMGRAAAGVKGVNLREGDYV-VGTSRIDDSQEVLVISENGL 723

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +           RGG G  V     R+GK   
Sbjct: 724 GKRTQASEYPTKGRGGKGMKVMNVTERTGKLAG 756



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 73/190 (38%), Gaps = 8/190 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++      +     +  L AL  ++GD L   L     D +++ +  G +       +  
Sbjct: 625 IVKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRD 684

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--T 640
                 A    ++L     +V     D + ++LV+S  G     + SE     R GK   
Sbjct: 685 MGRAA-AGVKGVNLREGDYVVGTSRIDDSQEVLVISENGLGKRTQASEYPTKGRGGKGMK 743

Query: 641 FLKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
            + V+    K+  +  V GD  + V+ +   ++  ++  I +  R  +GV++        
Sbjct: 744 VMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRL--DDE 801

Query: 698 SDVICFKICE 707
           + ++ F + +
Sbjct: 802 AQIVTFALVD 811


>gi|241889930|ref|ZP_04777228.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379]
 gi|241863552|gb|EER67936.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379]
          Length = 815

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/761 (33%), Positives = 419/761 (55%), Gaps = 29/761 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              + N+   ++   +E  +L Y++S I  RA+PD+RDG KPVHRRI++A +++GL +  
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSA +VGEV+ K HPHGD + Y ++VRLAQ F  RYPL+ GQGNFG+IDGDSAAA R
Sbjct: 62  PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +L+ +++D VD +D Y+    EP V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL DN EI+I +L+  I GPDFPTG  ++  R  IV++Y  GRG  
Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLL-GRSGIVKAYTTGRGSV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R +  +E++  G   I++TEIPYQV K++L+EKIAEL   K+I  + D+RDES     
Sbjct: 241 IMRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R ++ ++++ +++ L+ +++ F +NM  L    VP+++ L  +L  +L H++E
Sbjct: 301 RIVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALV-NGVPKLLNLKEVLYYYLEHQKE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL IA  NID II++IR     +      + +F LTE Q
Sbjct: 360 VVVRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQFGLTEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E   L+     ++ +L   ++    +  E+ EVKE F 
Sbjct: 420 AQAILDMRLQRLTGLERDKIEEEYSKLMELIADLEDILAKPERVIQIVKDELLEVKEKFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                 +RR+   E          + +IEKE I + +S+  +I+ L + +          
Sbjct: 480 D-----KRRSIIIEGQVD--QIENEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRGGRG 532

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           ++ +   + D++   L   T D IL  +  GK YTL    +       +   I  L+++ 
Sbjct: 533 VNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLEIE 592

Query: 598 HNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             + + +        +    L+  +  G     +  +  +  +KGK  LK+  ++ +  V
Sbjct: 593 KEEKVNSIIAISDLQEEGTNLIFSTKYGIIKKSKLGDYASILKKGKIALKLDEDDSLIDV 652

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            ++T D  + +V  N + +  + +++  M R  +GV+  +        V    + E    
Sbjct: 653 QRITDDQDIMIVTANGQAIRINAEKVRTMGRVSRGVKGITLSPDDYV-VGMEVVDESKKI 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        +        +  RGG G  V K   ++GK ++
Sbjct: 712 LTVTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVA 752



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 6/178 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
               AL   E DSL           I++++ +G+A  + A  + +       +   I L+
Sbjct: 636 KGKIALKLDEDDSLIDVQRITDDQDIMIVTANGQAIRINAEKVRTMGRVSRGV-KGITLS 694

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKV-SSEEKMKLVV 654
            +  +V   V D + K+L V+  G   I + +E     R GK     KV     K+  V 
Sbjct: 695 PDDYVVGMEVVDESKKILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVAVK 754

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            + G + + ++ +   ++   +  I  + R   GV++ +  D      +     E   
Sbjct: 755 SIAGNEDLMIMTDQGIIIRIDVSTISTLGRTATGVKVINLVDDQKVATVTLAAKEESY 812


>gi|90416545|ref|ZP_01224476.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207]
 gi|90331744|gb|EAS46972.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207]
          Length = 893

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/794 (31%), Positives = 403/794 (50%), Gaps = 64/794 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YLAYA+S I  RA+PD+RDG KPVHRR + AM+E+G D+  A+
Sbjct: 4   LAQEIVPVNIEDELKQSYLAYAMSVIVGRALPDVRDGLKPVHRRALFAMNELGNDWNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L+ +++D VDF   Y+E +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMTKIAHALLEDLEKDTVDFVPNYDETEQIPHVLPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LA+I+NPEI++++L+EYI GPDFPT   I+  R  I+++YR GRG   V
Sbjct: 184 PHNLTEVVKGCLAMIENPEITVDELMEYIPGPDFPTAA-IINGRAGIIQAYRTGRGRIYV 242

Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA+  +E         I++TEIPYQ+ K+RLIE+IAEL+  K++  + ++RDES +D   
Sbjct: 243 RAKADIEVNEKTRRETIIITEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R+   ++++ ++F  + +++ F +N+  L     P+++ L  ++  +L HRREV
Sbjct: 303 VVIEIKRTDVGEVVLNNLFAQTQLQSVFGINVVALVD-GQPKILNLQQLIHHFLRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-------------------- 411
           + RR+ + ++    R   L+G  IA  NIDEIIA+I+                       
Sbjct: 362 VTRRTIYLLKKARERAHTLEGFAIALGNIDEIIALIKASPSATEAREALVARGWNPGSVI 421

Query: 412 -----------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                +   ++ L+  Q   IL LRL  L  +E  +I +E    
Sbjct: 422 QMLDRAGAQATRPEWLEDHYGLRDGKYHLSPEQAKDILELRLHRLTGMEHDKIIAEFAVK 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L E  +   +L    +    I  E+  V E F        RRT   E   +      + +
Sbjct: 482 LEEIAEYQDILGDLTRLMTVIREELEAVVEEFGDE-----RRTEIIE---SLHDLTIEDL 533

Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I +E   V ISN G+         ++ +   +  SA   K+ D ++  L A T   IL  
Sbjct: 534 ITEEDRVVTISNGGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHATILCF 593

Query: 567 STDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKG 621
           +  GK Y L    +        G  +  L+ L   + I +    +       +++ ++ G
Sbjct: 594 TNLGKVYWLKVYQIPVAGRNSRGRPVINLLPLGEGERISSILPVEEYSADKFVIMATANG 653

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
                   +       G   + +   + +     +  D  V ++    K + F+      
Sbjct: 654 TVKKTSLEQYSRPRSVGLRAVDLVEGDHLVGTAIIDDDSDVMLLSSEGKAVRFASTDARS 713

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           M R  KGVR     +G     +     +G   +      Y +           RGG G +
Sbjct: 714 MGRVSKGVRGMRLPEGHEVISMVVPEEDGF-LLTVCENGYGKRTKVDEFPTKGRGGKGMI 772

Query: 740 VPKGFPRSGKFLSS 753
             +   R+G  + +
Sbjct: 773 AIQASERNGPLVGA 786



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 10/211 (4%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
               G R ++       + +  +  ++     TV  ++       +  SV L A+   EG
Sbjct: 624 PLGEGERISSIL--PVEEYSADKFVIMATANGTVKKTSLEQYSRPR--SVGLRAVDLVEG 679

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L           ++LLS++GKA    + +  S     + ++ +  L    ++++  V 
Sbjct: 680 DHLVGTAIIDDDSDVMLLSSEGKAVRFASTDARSMGRVSKGVRGMR-LPEGHEVISMVVP 738

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVV 664
           +    LL V   G     +  E     R GK  + +     +   +       GD + ++
Sbjct: 739 EEDGFLLTVCENGYGKRTKVDEFPTKGRGGKGMIAIQASERNGPLVGATQLFAGDEIMLI 798

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            +   ++    D++  + R  +GVR+   KD
Sbjct: 799 SDQGTMVRTRGDEVSVVGRNTQGVRIIRLKD 829


>gi|304310666|ref|YP_003810264.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium
           HdN1]
 gi|301796399|emb|CBL44607.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium
           HdN1]
          Length = 900

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/789 (30%), Positives = 395/789 (50%), Gaps = 50/789 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + + +  +++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SELAKEILPINIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNHWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQYFSLRYMLVDGQGNFGSIDGDNPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKIAHELLADLDKETVDFVPNYDGSEQMPSVLPTKVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A  A +D+ EI+IE L+++I GPDFPT G I+  R  I+E+YR GRG  
Sbjct: 182 IPPHNLGEVIDACFAFMDDSEITIEGLMKHIQGPDFPTYG-IINGRAGIIEAYRTGRGRI 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R+RAR  V  +   G   I+VTEIPYQ+ K+RLIE+IAEL+  K I  + ++RDES +++
Sbjct: 241 RIRARATVERDAKTGRDSIIVTEIPYQLNKARLIERIAELVKEKLIEGITELRDESDKNI 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV     R  + D+++ +++  + ME+ F +NM  L     P+++ L G+++ ++ HR+
Sbjct: 301 RIV-IEVRRGENADVVLNNLYSQTQMESVFGINMVALVD-GQPRLLNLRGVIEAFVRHRQ 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------- 419
           EV+ RR+ + ++    R  IL+GL +A  NID +I +I++                    
Sbjct: 359 EVVTRRTVYELRKARERAHILEGLAVALANIDPVIELIKSSASRAEAEERLLAQGWQPGN 418

Query: 420 ----------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL  L  LE  ++  E 
Sbjct: 419 VIAMLERAGEAHACRPEGLPAHYGLRNGLYYLSDVQAREILEMRLHRLTGLETEKLIQEY 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
              L    ++ ++L S ++    I  E+  ++E F+ +       +              
Sbjct: 479 QEKLEIIRELLAILASRERLMQVIRDELTAIREGFADARKTEIVASQLDINDEDLIPEET 538

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +                ++        +A   KE D ++  L   T D IL  ++ GK
Sbjct: 539 VVVTLSNDGYAKTQPLDHYQAQHRGGRGKAAAQVKEEDCIEHLLVVSTHDTILCFTSAGK 598

Query: 572 AYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            + L    +       +   I  L+ L  N+ I        YD    + + +S G    V
Sbjct: 599 VFWLKVYQIPQAGRQAKGRPIVNLLSLGENEKITAILPLRGYDGDRFVFMATSNGTVKKV 658

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
              E      +G   L++    ++  V    G   + ++    K + F  +++  M R  
Sbjct: 659 ALQEFSRPRSQGLIALELEENNRLVGVAITEGHQDIMLLSSEGKAVRFDENEVRAMGRTA 718

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR  +  +      +     +    + +    + +           RGG G +  +  
Sbjct: 719 RGVRGMNLPEDAAVIALIVPDPD-AQILTACENGFGKRTLVSEFPTKGRGGKGMIAIRTS 777

Query: 745 PRSGKFLSS 753
            R+GK + +
Sbjct: 778 ERNGKLMGA 786



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 7/171 (4%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 I+LLS++GKA       + +       ++ + +L  +  ++   V D   ++L 
Sbjct: 688 TEGHQDIMLLSSEGKAVRFDENEVRAMGRTARGVRGM-NLPEDAAVIALIVPDPDAQILT 746

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLI 672
               G       SE     R GK  + + + E+   +   V+V  G+ V ++ +   ++ 
Sbjct: 747 ACENGFGKRTLVSEFPTKGRGGKGMIAIRTSERNGKLMGAVQVNDGNEVMLISDQGTMVR 806

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNR 721
              D++  M R  +GV L    +G  +  +   +        ++      +
Sbjct: 807 IRADEVSLMGRDTQGVTLIRLNEGERLVGIEQVEEVSDAAVEEAKASGAKK 857


>gi|327460310|gb|EGF06647.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1057]
          Length = 826

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VIRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + ++G         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLREGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|301022397|ref|ZP_07186281.1| DNA gyrase, A subunit [Escherichia coli MS 69-1]
 gi|300397547|gb|EFJ81085.1| DNA gyrase, A subunit [Escherichia coli MS 69-1]
          Length = 875

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|328946262|gb|EGG40406.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1087]
          Length = 826

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/760 (32%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ +++D VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKDTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VTRRTAFDKEKAEARAHILAGLLIALDHIDEVILIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + ++G         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLREGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKARGGKGIKTANITDKNGPLAG 757


>gi|62289707|ref|YP_221500.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 1 str. 9-941]
 gi|82699636|ref|YP_414210.1| DNA topoisomerase IV subunit A [Brucella melitensis biovar Abortus
           2308]
 gi|189023956|ref|YP_001934724.1| DNA topoisomerase IV subunit A [Brucella abortus S19]
 gi|254697153|ref|ZP_05158981.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730049|ref|ZP_05188627.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260545538|ref|ZP_05821279.1| DNA topoisomerase IV subunit A [Brucella abortus NCTC 8038]
 gi|260757733|ref|ZP_05870081.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260761558|ref|ZP_05873901.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
 gi|62195839|gb|AAX74139.1| ParC, DNA topoisomerase IV, A subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615737|emb|CAJ10733.1| DNA gyrase/topoisomerase IV, subunit A:Gram negative topoisomerase
           IV, subunit A:DNA gyrase C-terminal repeat,
           beta-propeller [Brucella melitensis biovar Abortus 2308]
 gi|189019528|gb|ACD72250.1| DNA topoisomerase IV subunit A [Brucella abortus S19]
 gi|260096945|gb|EEW80820.1| DNA topoisomerase IV subunit A [Brucella abortus NCTC 8038]
 gi|260668051|gb|EEX54991.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260671990|gb|EEX58811.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 770

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 432 EPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRSFAIADGLSW 731

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|329954847|ref|ZP_08295864.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056]
 gi|328526951|gb|EGF53962.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056]
          Length = 842

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/758 (30%), Positives = 393/758 (51%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEDLMTYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E       I+VTEIPY V K+ LI+ IA+L   KRI  + +  DES  +   
Sbjct: 241 MRAKAEI-ETTSTHDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVH-GRPRLLNLKDLIKYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF LTE Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ E++  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIQNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  +  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGSKGTETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  +  G        +     + G   + +  ++++  V    G
Sbjct: 599 RVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F  + +  M R   GVR  +  + G   +  +IC K  E  T + 
Sbjct: 659 NNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPEAETIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +  +        RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLV 756


>gi|324992859|gb|EGC24779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK405]
          Length = 826

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVC 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VIRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + ++G         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLREGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|164685995|ref|ZP_01946409.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|165924109|ref|ZP_02219941.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334]
 gi|164601521|gb|EAX32985.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|165916448|gb|EDR35052.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334]
          Length = 848

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/780 (34%), Positives = 412/780 (52%), Gaps = 63/780 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+    KKSARIVG+VIGK
Sbjct: 17  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE R+++ A  ++ 
Sbjct: 77  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++++E+L+ +I GPDFPT G I+  R  IV++Y+ GRG   VRA+  +E    G 
Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAG-IINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVV E+PYQV K+RL+EKI EL+  KRI  +  +RDES +    ++   +R  + +++
Sbjct: 256 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 315

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L     P+V+ L  +L  +L HRREV+ RR+ F ++    
Sbjct: 316 LNNLYAQTQLQTVFGINMVALD-NGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 374

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP-------------------------------- 413
           R  IL+GL +A  NIDE+IA+I+    P                                
Sbjct: 375 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 434

Query: 414 -----KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                  +    + L+  Q  AIL+LRL  L  LE  +I+ E   ++ + E++ ++++  
Sbjct: 435 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 494

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  E+  VKE F        RRT   +          + +I +E   V +S+ G
Sbjct: 495 DKLHEVIREELIAVKEQFGDE-----RRTVIID---DHSDLTHEDLIPEEHRVVTLSHEG 546

Query: 529 W--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +         ++         A   KE D +K  L A++ D IL  ST GK Y L    +
Sbjct: 547 YIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQV 606

Query: 581 LS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
                   G  I  L+ L  ++ I        YD +  + + +++G    V  +E     
Sbjct: 607 PQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPR 666

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
            KGK  L ++  +++  V    G   + +V +  K + F   ++ EM R  +GVR    K
Sbjct: 667 TKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKLK 726

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  +     +G   + +    Y +           RGG G +  +   R+GK +S+
Sbjct: 727 AKQNVIALIVVKPKG-NILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSA 785



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 6/179 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  +    AL   EGD L           I+L++  GKA       +         ++  
Sbjct: 664 QPRTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRG- 722

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEK 649
           I L   Q+++   V      +L  +  G        +  +  R G+  + +     + + 
Sbjct: 723 IKLKAKQNVIALIVVKPKGNILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKV 782

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +        D V ++ +   L+   +++I +M R  +GVRL       +   +     E
Sbjct: 783 VSAAQVFDDDDVLLISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAE 841


>gi|327474471|gb|EGF19877.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK408]
          Length = 826

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGA-LVMGKSGIYRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VIRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + +DG         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|170681961|ref|YP_001744424.1| DNA gyrase subunit A [Escherichia coli SMS-3-5]
 gi|300903612|ref|ZP_07121530.1| DNA gyrase, A subunit [Escherichia coli MS 84-1]
 gi|300948925|ref|ZP_07162987.1| DNA gyrase, A subunit [Escherichia coli MS 116-1]
 gi|300958916|ref|ZP_07171019.1| DNA gyrase, A subunit [Escherichia coli MS 175-1]
 gi|301303309|ref|ZP_07209434.1| DNA gyrase, A subunit [Escherichia coli MS 124-1]
 gi|309793111|ref|ZP_07687539.1| DNA gyrase, A subunit [Escherichia coli MS 145-7]
 gi|170519679|gb|ACB17857.1| DNA gyrase, A subunit [Escherichia coli SMS-3-5]
 gi|300314419|gb|EFJ64203.1| DNA gyrase, A subunit [Escherichia coli MS 175-1]
 gi|300404348|gb|EFJ87886.1| DNA gyrase, A subunit [Escherichia coli MS 84-1]
 gi|300451621|gb|EFK15241.1| DNA gyrase, A subunit [Escherichia coli MS 116-1]
 gi|300841483|gb|EFK69243.1| DNA gyrase, A subunit [Escherichia coli MS 124-1]
 gi|308123397|gb|EFO60659.1| DNA gyrase, A subunit [Escherichia coli MS 145-7]
 gi|315255166|gb|EFU35134.1| DNA gyrase, A subunit [Escherichia coli MS 85-1]
 gi|324020903|gb|EGB90122.1| DNA gyrase, A subunit [Escherichia coli MS 117-3]
          Length = 875

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|154684525|ref|YP_001419686.1| DNA gyrase subunit A [Bacillus amyloliquefaciens FZB42]
 gi|154350376|gb|ABS72455.1| GyrA [Bacillus amyloliquefaciens FZB42]
          Length = 793

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/735 (34%), Positives = 406/735 (55%), Gaps = 28/735 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ++T F +N+  L     P+V+ L   L+ +L H++ V+ RR+++ ++  + R  IL+GL 
Sbjct: 300 LQTSFGINLLALVD-GQPKVLSLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLR 358

Query: 395 IAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           IA  ++D +I++IRN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E 
Sbjct: 359 IALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEY 418

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +L+A   ++  +L +  +    I  E+ E+KE F+       RRT     +   +    
Sbjct: 419 QSLVALIAELKDILANEARVLEIIREELNEIKERFNDE-----RRTEIV--TSGLETIED 471

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +IE+E I + +++ G+++          K     +  +   E D ++  +   T D I
Sbjct: 472 EDLIERENIVITLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTI 531

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  GK Y      +       +   I  L+++   + I        +D    L   +
Sbjct: 532 LFFSNKGKVYRSKGYEIPEYGRTAKGIPIINLLEVEKGEWINAIIPVSTFDEEQYLFFTT 591

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
            +G +     S+       G   L +  ++++  V    G   + +  +N  L+ F  + 
Sbjct: 592 KQGVSKRTALSQFANIRNNGLIALGLREDDELMAVRLTDGKKQIIIGTKNGLLIRFPEED 651

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           + +M R   GV+  +  D  +   +   + E    +      Y +        +  RGG 
Sbjct: 652 VRQMGRTAAGVKGITLTDDDVVVGMEI-LEEDSHVLIVTENGYGKRTPASEYRVQSRGGK 710

Query: 737 GSLVPKGFPRSGKFL 751
           G    K    +G  +
Sbjct: 711 GLKTCKITDSNGPLV 725



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 71/217 (32%), Gaps = 12/217 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
             E      A +  +  ++E      + +G  +           +  L AL  +E D L 
Sbjct: 565 EVEKGEWINAIIPVSTFDEEQYLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDELM 624

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                    +I++ + +G     P  ++        A    I L  +  +V   + +   
Sbjct: 625 AVRLTDGKKQIIIGTKNGLLIRFPEEDVRQMGRTA-AGVKGITLTDDDVVVGMEILEEDS 683

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
            +L+V+  G       SE    +R GK        +    +  V    G+  + ++  + 
Sbjct: 684 HVLIVTENGYGKRTPASEYRVQSRGGKGLKTCKITDSNGPLVTVKATKGEEDLMIITASG 743

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            L+   I+ I    R  +GVRL    D      +   
Sbjct: 744 VLIRMDINDISTTGRVTQGVRLIRMSDQEHVATVALV 780


>gi|302390805|ref|YP_003826625.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501]
 gi|302202882|gb|ADL11560.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501]
          Length = 811

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/753 (32%), Positives = 400/753 (53%), Gaps = 14/753 (1%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             L ++   +V++   ++E Y+ YA+S I  RA+PD+RDG KPVHRRI++AM ++G+   
Sbjct: 2   PELKKQEATSVNIENEMKESYMDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQLGITPN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            + KKSARIVGEV+GK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGDSAAA 
Sbjct: 62  KSHKKSARIVGEVLGKYHPHGDTAVYDTMVRMAQNFSYRYMLVDGHGNFGSVDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM++++  +L  +++D VDF+  +++   EP V PS+ PNLL NG+SGIAVGM+T
Sbjct: 122 RYTEARMSKLSTELLSDINKDTVDFKPNFDDTLKEPEVLPSRLPNLLINGSSGIAVGMST 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +A+IDNP++ I +L++ I GPDFPTGG ++  R+ I +++  G+G 
Sbjct: 182 NIPPHNLTEVIDGLIAMIDNPDLDIIELMKIIKGPDFPTGG-LIMGRKGIKKAFETGKGK 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA+  +EE G     I+V E+PYQV K++L+EK A L+    +  + D+RDES  + 
Sbjct: 241 VKVRAKTEIEEFGNNRERIIVNELPYQVNKAKLVEKTANLVRDGEVEGIADLRDESDRNG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     +S +P +++  +F  + ++  F + M  L     P+V+ L  +L+ +L H++
Sbjct: 301 MRISIDLRKSANPKIVLNKLFKHTQLQRTFGIIMLALVD-GEPEVLSLKEVLQHYLEHQK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ + +     RV IL+GL  A+ NID ++  IR+ +     +  ++S F LT+ 
Sbjct: 360 EVVTRRTKYNLDKAQSRVHILEGLKTAFNNIDAVVKTIRSSESKNVAQERLISDFDLTKK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RL+ L  LE  +I+SE   L+ E E + S+L S ++  + I  EI  +KE +
Sbjct: 420 QAKAILRMRLQRLTGLEIEKIESEYQKLIEEIEYLKSILASEEKLLDIIKDEILVLKEKY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                                   +  +   +   +        RS       +  ++  
Sbjct: 480 KDERRTKIVDQEIDLAVEDLIEEEEILITITDNNYIKRIPLDTYRSQHRGGRGIIGINPD 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
             DS++      T D +L  +  G+ Y L    +       +  AI  L+D+  N+ +  
Sbjct: 540 AKDSVEQLYTTSTHDYLLFFTNQGRTYRLKGYQIPDASRQAKGTAIINLLDMEPNERVTA 599

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
               +       LL+V+ +G     E  E       G   L +   +++  V   TG + 
Sbjct: 600 VIPVEDFDLDDYLLMVTEQGIVKRTELQEF-NTNYTGLIALDLQQNDELIEVRLTTGQED 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +  E    + F+  ++  M R  +GV+           V    I +G   +    + Y
Sbjct: 659 IILGTELGLAIRFNESEVRSMGRTARGVKGIDLASQDKV-VGADIIKDGGKLLVVTDKGY 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +           R G G L  K   ++GK  +
Sbjct: 718 GKQTPLNKYRRQSRAGKGLLTIKRTDKNGKLTA 750



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           IDL     +V A +     KLLVV+ KG       ++    +R GK  L +   +K   +
Sbjct: 689 IDLASQDKVVGADIIKDGGKLLVVTDKGYGKQTPLNKYRRQSRAGKGLLTIKRTDKNGKL 748

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +  V   D V ++ +   ++  S+ +I   SR  +GV L S  +G     +     E 
Sbjct: 749 TALKVVEEDDEVMLISKEGIVIRMSVSEISSTSRNTQGVNLMSLVEGDRVVSLAHIEDED 808


>gi|255034822|ref|YP_003085443.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053]
 gi|254947578|gb|ACT92278.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053]
          Length = 875

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/755 (30%), Positives = 396/755 (52%), Gaps = 20/755 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G+ +  A KK
Sbjct: 7   ENIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLYGMDDLGVSYNRAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVY+++VR+AQP+  RYPL+ GQGNFG++DGD+ AA RYTEA
Sbjct: 67  SARIVGEVLGKYHPHGDSSVYNTMVRMAQPWSLRYPLVDGQGNFGSVDGDNPAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++A+ +L  +++D VDF+  +++  SEP V P+KFPNLL NG+SGIAVGMAT++  H
Sbjct: 127 RLKRIADELLADLNKDTVDFQPNFDDSLSEPSVLPAKFPNLLVNGSSGIAVGMATNMAPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN EI+I +L+E++  PDFPTGG I+     +  +   GRG   +R+
Sbjct: 187 NLGEVVDGVLAYIDNNEITIPELMEHVKAPDFPTGG-IIYGYNGVRSAMETGRGSIIMRS 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E    G   I+VTEIPY + K+ +IE+IA LI  K++  + DIRDES  +   ++F
Sbjct: 246 KAQFEVSKTGREQIIVTEIPYMINKAAMIERIASLINDKKLEGISDIRDESDREGMRIVF 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +   P++++  +F  + ++T F +N   L     P ++ L  ++K ++ HR  V+ R
Sbjct: 306 DLKKDAIPNIVLNHLFKYTPLQTSFGVNNVALVK-GRPVLLNLKDLIKHYVDHRIVVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           R+ + ++  ++R  IL+GLLIA  N+D +IA+IR    P+      + +F L+E Q  AI
Sbjct: 365 RTEYELREAEKRAHILQGLLIALDNLDAVIALIRAARDPETAKTGLMEQFELSEIQARAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I  E + ++     +  +L +  +++  I  E+ ++KE +  +  
Sbjct: 425 LDMRLQRLTGLEREKIVKEYEEIMILIADLKDILANEYRKYEIIKTELTDIKERYGDARR 484

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                +          A  +  +   +   +  +     R+     V    +  K+ D  
Sbjct: 485 TQIEFSAEEFSDEDMIADEEMLITISKEGYIKRTPLSEYRTQTRGGVGSRGVKTKDTDFT 544

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF--- 606
           +    A   + +L+ +  GK + +    +  G    +   IQ LI L     I +     
Sbjct: 545 EHLFSATMLNYLLIFTEYGKLFWMKVYEVPEGSKTSKGRPIQNLISLESGDSIRSVINVK 604

Query: 607 -----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                 Y +   L++ + +G                G   + ++  +++  V    GD  
Sbjct: 605 TLSDEDYINNNYLIMCTEQGTIKKTLLEAYSRPRTNGIIAISINEGDRLLNVALTNGDND 664

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGLTWIDSAGR 717
           + +     + + F+   +  M R   GVR  +    D  +  ++C    E    +  +  
Sbjct: 665 IVIASAAGRAVRFNEKGVRPMGRTAAGVRGINLNDPDNKVIGMVCIS-REDAQLLVVSEN 723

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +        +  RGG G        + GK ++
Sbjct: 724 GFGKRSAIDSYRVTNRGGKGVSTMNATDKVGKLVA 758



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 8/143 (5%)

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK--- 649
            ++   N+ I    +     +LLVVS  G              R GK    +++ +K   
Sbjct: 696 NLNDPDNKVIGMVCISREDAQLLVVSENGFGKRSAIDSYRVTNRGGKGVSTMNATDKVGK 755

Query: 650 MKLVV-KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC---FK 704
           +  +      D + ++  N   +  S+  I +  R  +GV+L           +      
Sbjct: 756 LVAIREVTEEDDLMIITRNGIAIRMSVLDIRQAGRNTQGVKLIRLSSSDEITSVTRILKD 815

Query: 705 ICEGLTWIDSAGRSYNRSENDLL 727
             E    +D  G    +    + 
Sbjct: 816 PDEKAEELDEDGNVVAKPVAQVE 838



 Score = 37.8 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 46/412 (11%), Positives = 117/412 (28%), Gaps = 24/412 (5%)

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPD 323
                ++EI  +      ++++  L   K +   E+I    +     +    +   +   
Sbjct: 411 MEQFELSEIQARAILDMRLQRLTGLEREKIVKEYEEIMILIADLKDILANEYRKYEIIKT 470

Query: 324 LLMESIFMLSDMET--------RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            L +      D            F     +     +  +     I +  L+  R      
Sbjct: 471 ELTDIKERYGDARRTQIEFSAEEFSDEDMIADEEMLITISKEGYIKRTPLSEYRTQTRGG 530

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
              R                  LN   I             +      ++      +   
Sbjct: 531 VGSRGVKTKDTDFTEHLFSATMLNYLLIFTEY--GKLFWMKVYEVPEGSKTSKGRPIQNL 588

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           +          + +       +    + L+   +Q    I   + E    +S+    G  
Sbjct: 589 ISLESGDSIRSVINVKTLSDEDYINNNYLIMCTEQ--GTIKKTLLE---AYSRPRTNGII 643

Query: 496 RTTFCEVSR----ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
             +  E  R    A        +I       V  N   +R +   +  +  ++  + D+ 
Sbjct: 644 AISINEGDRLLNVALTNGDNDIVIASAAGRAVRFNEKGVRPMGRTAAGVRGINLNDPDNK 703

Query: 552 KIALHAHTTD--RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            I +   + +  ++L++S +G        +       G+ +  +   +    +V      
Sbjct: 704 VIGMVCISREDAQLLVVSENGFGKRSAIDSYRVTNRGGKGVSTMNATDKVGKLVAIREVT 763

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
               L++++  G A  +   +I    R   G   +++SS +++  V ++  D
Sbjct: 764 EEDDLMIITRNGIAIRMSVLDIRQAGRNTQGVKLIRLSSSDEITSVTRILKD 815


>gi|153009866|ref|YP_001371081.1| DNA topoisomerase IV subunit A [Ochrobactrum anthropi ATCC 49188]
 gi|151561754|gb|ABS15252.1| DNA topoisomerase IV, A subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 770

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/764 (59%), Positives = 587/764 (76%), Gaps = 22/764 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+ 
Sbjct: 7   PPDDGEEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNP 66

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA
Sbjct: 67  DQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAA 126

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMA
Sbjct: 127 MRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMA 186

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDF 226
           T+IP HNV E+C +AL +I++P+  +E+L+                        + GPDF
Sbjct: 187 TNIPPHNVAELCSSALYIINHPDAPVEELVTSPEQWEELKREAETDPAALLKCKVRGPDF 246

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PTGGI+VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKI
Sbjct: 247 PTGGILVEEHGNILEAYRTGRGAFRVRARWEKEEGNRGTWVIVVTEIPYQVQKSRLIEKI 306

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           AEL++AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVL
Sbjct: 307 AELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVL 366

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
           S G+VP V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL G LIAYLN+DE+I I
Sbjct: 367 SHGKVPNVLSLGSVLREWLDHRKEVLVRRSQFRLAEIERRLEILGGFLIAYLNLDEVIRI 426

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L  EK  ++ LL 
Sbjct: 427 IREEDEPKQDLMRTFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTVEKTDLEGLLA 486

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           SG +QW +I+ EI+ V+E F   T+LG RRTTF +    D   + QAMIE+EP+T+V+S 
Sbjct: 487 SGTRQWKKISAEIKSVREKFGPKTELGARRTTFADAPTHDLEDIHQAMIEREPVTIVVSE 546

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGH
Sbjct: 547 KGWLRAMKGHLADFSTLAFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGH 606

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE I++L+D+ ++QDI+TAFV+D   KLL+VS +GN FIV ESE +ANTRKGK  + V +
Sbjct: 607 GEPIRILVDMENDQDILTAFVHDPAAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKA 666

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC 706
            ++ KL  +V+GDH+AVVGENRK+++F +  IPEM+RGKGVRLQ YKDGG+SDV  F I 
Sbjct: 667 PDEAKLCQRVSGDHIAVVGENRKMVVFPLSDIPEMTRGKGVRLQKYKDGGVSDVRTFAIA 726

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFPRSG+F
Sbjct: 727 DGLSWQDSAERTFNRSKEELVEWIGARASAGRLVPKGFPRSGRF 770


>gi|189499116|ref|YP_001958586.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1]
 gi|189494557|gb|ACE03105.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1]
          Length = 828

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/752 (31%), Positives = 391/752 (51%), Gaps = 13/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + +  +S+   + + YL Y++S I  RA+PD+RDG KPVHRR++  M E+GL  G  
Sbjct: 1   MQRDKILPISIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG++DGDS AA RY
Sbjct: 61  YKKSARVVGEVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +L+ ++++ V F   +++   EP V PS  PN+L NG SGIAVGMAT+I
Sbjct: 121 TEVRMKNIAGEMLKDLEKETVGFSLNFDDSLEEPTVLPSAMPNMLVNGASGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P  N+ E+    +A+I+NPEI+I++++E+II PDFPT G I+   E + ++Y  GRG   
Sbjct: 181 PPQNLSEVVNGLIAMIENPEITIDEIMEHIIAPDFPTAG-IIYGYEGVKQAYHTGRGKVV 239

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  VE     G   I+VTE+PYQV K RLIEKI ELI  K+I  + DIRDES  D  
Sbjct: 240 IRARAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELIHLKKIEGIADIRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++  ++  + M+  F + +  L    VP+V+ L  +++ +L HR E
Sbjct: 300 RLVIELKRDAVAKVVLNHLYKHTPMQDTFGVILLALVD-GVPKVLNLKEMMEAYLKHRNE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           ++ RR+++ + A +++  IL+GL I   N+DE+I+ IR        +  ++ +F LTE Q
Sbjct: 359 IVLRRTTYELAAAEKKAHILEGLKICLDNLDEVISTIRESPNAGVAQEKLMEKFGLTELQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             A+L +RL+ L  +E  +I+ + +  LA  E++  +L + +++   I  E+ +VK+++ 
Sbjct: 419 SKAVLEMRLQRLTGMERDKIEKDYNETLALIEELRFILANPEKRMQIIKDELLKVKQVYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  R            A     +       +        R        ++    + 
Sbjct: 479 DERRTEIRPQEGEFSIEDMIAQEDVVITITHETFIKRFPVSGYRRQARGGKGVTGAQARH 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDI--- 602
            D ++    A T + IL  +  G+ + L    +        G ++  +++L   + I   
Sbjct: 539 EDFVEHMFVASTHNYILFFTNKGRCHWLKVYEIPEAGRAARGRSLANIMELQPGEKIKAY 598

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
           +    +D    +++ ++KG+    E        R G   + +   +++       G+H  
Sbjct: 599 INVKTFDDPLFIIMATAKGSIKKTEIEAFSRPRRNGIAAITIEDGDELIDARLTDGEHDI 658

Query: 663 VVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           ++ +N    + F+   +  M R   GV+  S  +G     +        + +      + 
Sbjct: 659 ILAKNTGYAVRFAEKDVRPMGRTAMGVKGISLDEGETCISMVTSKRPDTSLLAVTDNGFG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        L +RG  G +  K   + G  + 
Sbjct: 719 KRSKVEDYRLTRRGAKGVITLKAHEKVGHLVG 750


>gi|288927538|ref|ZP_06421385.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330372|gb|EFC68956.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108]
          Length = 871

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/772 (29%), Positives = 384/772 (49%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VG+V+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E I+  +++D VD  + ++    EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKLGERIMDDLEKDTVDMEENFDATLQEPQVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNPEI  E L+ +I  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNMPTHNLAEVLDGCCAYIDNPEIDTEGLMLHIKAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E       IV++EIPY V K++LIE IA+L+   R+  + +  DES
Sbjct: 240 GRGRIVLRAKAEI-ESDESHDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVVLNKLFKMTQLQSSFSVNNIALVK-GRPRLLTLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  IL+GL+IA  NIDE++ IIRN   P     +   RF 
Sbjct: 358 EHRHDVTIRRTKFDLKKAQERAHILEGLIIACDNIDEVVQIIRNSKTPSEAQRNLEKRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E   L     ++  +L+  ++    +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRIEQLHAEYQELEELIARLQLILDDPEECKRVMKAELEEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE F        RRT              +     +P+ + +S+ G+I+           
Sbjct: 478 KEKFGDE-----RRTEIIPDEHE---FNAEDFYPNDPVVITVSHLGYIKRTPLSEFHEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V     + ++ D  +    A     +L  +  G+ + L    +  G    +  AIQ 
Sbjct: 530 RGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCHWLKCYEIPEGDKTSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L++++ +  +             +     ++  +  G                G   + +
Sbjct: 590 LLNIDADDSVNAFLRVKGLNDVDFIKNHFIVFATKNGTVKKTSLEAYSRPRTNGVNAITI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDV 700
           +  +++  V    G + + +   N + + F  + +  M R   GVR       D  +  +
Sbjct: 650 AEGDEVVDVRLTNGKNQLIMANRNGRAVYFDENTVRTMGRTATGVRGMRLDGGDDAVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I     E  T +  +   Y +           RGG G        ++GK ++
Sbjct: 710 IVVNNPETETVMVVSETGYGKRSIVSDYRQTNRGGKGVKTLNITDKTGKLVA 761



 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 92/271 (33%), Gaps = 16/271 (5%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             + +  +           +  +        +   I   +         + D        
Sbjct: 552 ATMHQTMLFFTKKGRCHWLKCYEIPEGDKTSKGRAIQNLLNI------DADDSVNAFLRV 605

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
             ++  D       +   +  TV  ++       +++   ++A+   EGD +      + 
Sbjct: 606 KGLNDVDFIKNHFIVFATKNGTVKKTSLEAYSRPRTN--GVNAITIAEGDEVVDVRLTNG 663

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVV 617
            +++++ + +G+A       + +       ++ +     +  +V   V +   T  ++VV
Sbjct: 664 KNQLIMANRNGRAVYFDENTVRTMGRTATGVRGMRLDGGDDAVVGMIVVNNPETETVMVV 723

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIF 673
           S  G       S+     R GK    ++  +K   +  +  VT D  + ++ ++   +  
Sbjct: 724 SETGYGKRSIVSDYRQTNRGGKGVKTLNITDKTGKLVAIKNVTDDNDLMIINKSGIAIRL 783

Query: 674 SIDQIPEMSRG-KGVRLQSY-KDGGISDVIC 702
           ++     M R  +GVRL +  K   +   +C
Sbjct: 784 AVANFRVMGRATQGVRLINLSKKNDVIASVC 814


>gi|322392034|ref|ZP_08065497.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           peroris ATCC 700780]
 gi|321145132|gb|EFX40530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           peroris ATCC 700780]
          Length = 822

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/760 (31%), Positives = 398/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTREMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ ++L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETVDAVKLVMDNPEVTTKELMEVLPGPDFPTGA-LVMGKSGIYKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEVTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FIIEVKRDASANVILNNLFKMTQMQTSFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +  +      +S+F L+E Q 
Sbjct: 359 VTRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L    +    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPDRVAQIIKEELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +         + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----KRRTEL--MVGEVLTLEDEDLIEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    D        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVDSERSDDAYLFFTTRAGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GVR  + ++G         I +    +
Sbjct: 652 LTQEDMDIIIGTKLGYAVRFNQSTVRSMSRSATGVRGVNLREGDTVVGASV-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVTDKNGPLAG 750


>gi|212212978|ref|YP_002303914.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212]
 gi|212011388|gb|ACJ18769.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212]
          Length = 850

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/780 (34%), Positives = 412/780 (52%), Gaps = 63/780 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+    KKSARIVG+VIGK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE R+++ A  ++ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++++E+L+ YI GPDFPT G I+  R  IV++Y+ GRG   VRA+  +E    G 
Sbjct: 199 LIENPDLNVEELMRYIPGPDFPTAG-IINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVV E+PYQV K+RL+EKI EL+  KRI  +  +RDES +    ++   +R  + +++
Sbjct: 258 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 317

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L     P+V+ L  +L  +L HRREV+ RR+ F ++    
Sbjct: 318 LNNLYAQTQLQTVFGINMVALD-NGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 376

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP-------------------------------- 413
           R  IL+GL +A  NIDE+IA+I+    P                                
Sbjct: 377 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 436

Query: 414 -----KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                  +    + L+  Q  AIL+LRL  L  LE  +I+ E   ++ + E++ ++++  
Sbjct: 437 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 496

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  E+  VKE F        RRT   +          + +I +E   V +S+ G
Sbjct: 497 DKLHEVIREELIAVKEQFGDE-----RRTVIID---DHSDLTHEDLIPEEHRVVTLSHEG 548

Query: 529 W--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +         ++         A   KE D +K  L A++ D IL  ST GK Y L    +
Sbjct: 549 YIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQV 608

Query: 581 LS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
                   G  I  L+ L  ++ I        YD +  + + +++G    V  +E     
Sbjct: 609 PQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPR 668

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
            KGK  L ++  +++  V    G   + +V +  K + F   ++ EM R  +GVR    K
Sbjct: 669 TKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKLK 728

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  +     +G   + +    Y +           RGG G +  +   R+GK +S+
Sbjct: 729 AKQNVIALIVVKPKG-NILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSA 787



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 6/179 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  +    AL   EGD L           I+L++  GKA       +         ++  
Sbjct: 666 QPRTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRG- 724

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEK 649
           I L   Q+++   V      +L  +  G        +  +  R G+  + +     + + 
Sbjct: 725 IKLKAKQNVIALIVVKPKGNILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKV 784

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +        D V ++ +   L+   +++I +M R  +GVRL       +   +     E
Sbjct: 785 VSAAQVFDDDDVLLISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAE 843


>gi|254689018|ref|ZP_05152272.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|256257268|ref|ZP_05462804.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
 gi|260754512|ref|ZP_05866860.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|260883541|ref|ZP_05895155.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
 gi|260674620|gb|EEX61441.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|260873069|gb|EEX80138.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
          Length = 770

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 432 EPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 731

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|227432901|ref|ZP_03914845.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351334|gb|EEJ41616.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 848

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/756 (31%), Positives = 386/756 (51%), Gaps = 16/756 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L +  +K  +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G    
Sbjct: 2   SELNDSRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  R+ LI G GNFG++DGD AAA 
Sbjct: 62  KPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQHFSYRHMLIDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++VA  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP+HN+ E+  A   L++NPE +   L+E + GPDFPTGG IV  +  I  +Y  GRG 
Sbjct: 182 NIPTHNLAEVIFALHILMNNPEATTADLMEALPGPDFPTGG-IVMGKSGIRRAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA+  +E++  G   IVVTE+PY V K+RLIE+I+EL   K+I  +  IRDES  + 
Sbjct: 241 VTVRAKVDIEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R     +++ +++  + ++T F  NM  +     P+ M L  IL  +LAH+R
Sbjct: 301 LRISIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDH-GAPKTMSLKEILVAYLAHQR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTEN 426
           EV+ RR+ F +Q    R  IL+GL IA  +IDEII IIR+    +       + ++L++ 
Sbjct: 360 EVIRRRTVFELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLINGYALSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +I+ E   L+A    +  +L   ++    I  E+ E++  F
Sbjct: 420 QAQAILDMRLVRLTGLERDKIEEEYQKLVALIADLKDILAHEERVDEIIYNELLEIQTKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHF 545
                   +      +   D    +  ++       +     G  ++       +  ++ 
Sbjct: 480 GDKRRTELQVGDVLSIEDEDLIEEEDVIVTLTNSGYIKRVATGEFKAQNRGGRGVQGMNV 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
            + D +   +   T D +L  +  GK Y +    +       +   +  L++   N+ I 
Sbjct: 540 HDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVNLLNFEGNEKIQ 599

Query: 604 TAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           T         +S   L  V+  G        E       G   L +  ++++  V    G
Sbjct: 600 TVINVRGEAGESNDYLFFVTRLGVVKRTAVKEFANIRTNGLKALTLHDDDEVLSVQITDG 659

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             ++ +   N   + F+ + +  M R   GVR    ++G +  V    + +    +    
Sbjct: 660 TQNIIIATHNGYSVSFAENDVRVMGRSAAGVRGIRLREGDLV-VGSDVLEKDHNVLIITE 718

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + Y +        +  RGG G        ++G    
Sbjct: 719 KGYGKQTPVSEYPIKGRGGKGIKTANITEKNGPLAG 754



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 74/200 (37%), Gaps = 9/200 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL   + D +        T  I++ + +G + +  A N +   G   A    
Sbjct: 634 NIRTNGLKALTLHDDDEVLSVQITDGTQNIIIATHNGYSVSF-AENDVRVMGRSAAGVRG 692

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V + V +    +L+++ KG       SE     R GK      +   +   
Sbjct: 693 IRLREGDLVVGSDVLEKDHNVLIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKNGP- 751

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  +  V+G + + V      ++ F++D + +  R   GVRL    +G        K+  
Sbjct: 752 LAGMTIVSGQEDIMVTTTQGVMIRFNVDSVSQTGRATLGVRLIRL-EGNAKVATLAKVEH 810

Query: 708 GLTWIDSAGRSYNRSENDLL 727
                D +  + +++  D  
Sbjct: 811 EEVLEDVSRETSDKAPLDEQ 830


>gi|23501641|ref|NP_697768.1| DNA topoisomerase IV subunit A [Brucella suis 1330]
 gi|161618723|ref|YP_001592610.1| DNA topoisomerase IV subunit A [Brucella canis ATCC 23365]
 gi|163843026|ref|YP_001627430.1| DNA topoisomerase IV subunit A [Brucella suis ATCC 23445]
 gi|225852271|ref|YP_002732504.1| DNA topoisomerase IV subunit A [Brucella melitensis ATCC 23457]
 gi|254693501|ref|ZP_05155329.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|254701530|ref|ZP_05163358.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|254704079|ref|ZP_05165907.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|254713872|ref|ZP_05175683.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|254717071|ref|ZP_05178882.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|256044443|ref|ZP_05447347.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113287|ref|ZP_05454155.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159485|ref|ZP_05457253.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|256254771|ref|ZP_05460307.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|256264222|ref|ZP_05466754.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369187|ref|YP_003106695.1| DNA topoisomerase IV subunit A [Brucella microti CCM 4915]
 gi|260168497|ref|ZP_05755308.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|260563794|ref|ZP_05834280.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260566673|ref|ZP_05837143.1| DNA topoisomerase IV subunit A [Brucella suis bv. 4 str. 40]
 gi|261213760|ref|ZP_05928041.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|261218881|ref|ZP_05933162.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|261221951|ref|ZP_05936232.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|261321620|ref|ZP_05960817.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|261752079|ref|ZP_05995788.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|261754738|ref|ZP_05998447.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|261757966|ref|ZP_06001675.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|265990864|ref|ZP_06103421.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994700|ref|ZP_06107257.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|265997914|ref|ZP_06110471.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|294852118|ref|ZP_06792791.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|23347560|gb|AAN29683.1| DNA topoisomerase IV, A subunit [Brucella suis 1330]
 gi|161335534|gb|ABX61839.1| DNA topoisomerase IV, A subunit [Brucella canis ATCC 23365]
 gi|163673749|gb|ABY37860.1| DNA topoisomerase IV, A subunit [Brucella suis ATCC 23445]
 gi|225640636|gb|ACO00550.1| DNA topoisomerase IV, A subunit [Brucella melitensis ATCC 23457]
 gi|255999347|gb|ACU47746.1| DNA topoisomerase IV subunit A [Brucella microti CCM 4915]
 gi|260153810|gb|EEW88902.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260156191|gb|EEW91271.1| DNA topoisomerase IV subunit A [Brucella suis bv. 4 str. 40]
 gi|260915367|gb|EEX82228.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|260920535|gb|EEX87188.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|260923970|gb|EEX90538.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|261294310|gb|EEX97806.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|261737950|gb|EEY25946.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|261741832|gb|EEY29758.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|261744491|gb|EEY32417.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|262552382|gb|EEZ08372.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|262765813|gb|EEZ11602.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001648|gb|EEZ14223.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094467|gb|EEZ18289.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 2 str.
           63/9]
 gi|294820707|gb|EFG37706.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|326408776|gb|ADZ65841.1| DNA topoisomerase IV subunit A [Brucella melitensis M28]
 gi|326538494|gb|ADZ86709.1| DNA topoisomerase IV, A subunit [Brucella melitensis M5-90]
          Length = 770

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 731

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|116491824|ref|YP_803559.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745]
 gi|116101974|gb|ABJ67117.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745]
          Length = 843

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/763 (30%), Positives = 381/763 (49%), Gaps = 22/763 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     +   +  V+L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---LSGRITDVNLSSQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 58  VTPEKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++   +L+ ++++ VDF++ Y+  + EP + P++FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKITLEMLRDINKNTVDFQENYDGTEREPSILPARFPNLLVNGATGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+  A   L++N + +   L+E + GPDFPTGG IV  +  I ++Y  
Sbjct: 178 GMTTNIPPHNLSEVISAIHILMNNEDATTADLMEAVPGPDFPTGG-IVMGKSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G G   +RA+  +E    G   IV TE+PY V K++LIE+IAEL   KRI  + D+ DES
Sbjct: 237 GHGTIILRAKVDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R +   +++ +++ ++ M+T F  NM  +     P+V+ L  IL+ +L
Sbjct: 297 DRDGLRVVIDVRRDVSASVVLNNLYKMTLMQTTFGFNMLAIV-NGAPKVLGLKEILQHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H+ EV+ RR+ F ++  + R  IL+GL IA  +IDEIIAIIRN       K  +++ +S
Sbjct: 356 VHQEEVIRRRTEFDLKKAEARAHILEGLRIALDHIDEIIAIIRNSQTAEVAKDKLMNNYS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q  AIL++RL  L  LE  +++ E + ++A       +L   ++    I  E+ E+
Sbjct: 416 LSSKQAQAILDMRLVRLTGLEREKVEDEYNKVMAAITDYRDILAHRERINEIIYKELLEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +E F               +   D    +  M+       +        ++       + 
Sbjct: 476 QERFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGYIKRMATSEFKTQNRGGRGIQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D ++  +   T D +L  +  GK Y +    +       +   +  L+ ++  
Sbjct: 536 GMGVHDDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVINLLGISSG 595

Query: 600 QDIVTAFVY--------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           ++I              +    L   +  G       +E +     G   + +   +++ 
Sbjct: 596 ENIQAVINIGRDNGDEDNENRYLFFTTLNGVTKRTPVAEFLNIRSNGLKAISLKENDEVI 655

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            VV   G+  + +   N   + F    +  M R   GVR    +D            E  
Sbjct: 656 NVVITDGEQNIIIGTHNGYAVSFKEADVRSMGRSATGVRGIRLRDEDYVVGSAILKPESK 715

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +    + Y +        +  RGG G        ++G    
Sbjct: 716 -VLVITEKGYGKQTPASEYPIKGRGGKGIKTANITEKNGPLAG 757



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 6/178 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  L A+  KE D +   +       I++ + +G A +    ++ S       ++  
Sbjct: 637 NIRSNGLKAISLKENDEVINVVITDGEQNIIIGTHNGYAVSFKEADVRSMGRSATGVRG- 695

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V + +     K+LV++ KG       SE     R GK      +   +   
Sbjct: 696 IRLRDEDYVVGSAILKPESKVLVITEKGYGKQTPASEYPIKGRGGKGIKTANITEKNGPL 755

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
             LV     + V ++ +   ++ F ++ +    R   GV +    +      +     
Sbjct: 756 AGLVTVEGTEDVMLITDRGVMIRFDVNNVSTTGRATLGVHVIKTDENSKVATMAIVDE 813


>gi|317051764|ref|YP_004112880.1| DNA gyrase subunit A [Desulfurispirillum indicum S5]
 gi|316946848|gb|ADU66324.1| DNA gyrase, A subunit [Desulfurispirillum indicum S5]
          Length = 821

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/763 (33%), Positives = 406/763 (53%), Gaps = 25/763 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S   TL  E+++ V ++  +E  Y+ YA+S I  RA+PD+RDG KPVHRR++ AM E+G
Sbjct: 1   MSEE-TLFPEDIQVVDIKREMESAYIDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           + +   +KKSARIVG+VIGK HPHGD +VYD++VR+ Q F  RYPLI GQGNFG++DGDS
Sbjct: 60  VAYNKPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDS 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++++ +L  ++++ V+F+  Y++   EP + P++ PNLL NG+SGIAV
Sbjct: 120 AAAMRYTEVRLKRISDELLTDLEKNTVEFQSNYDDTIQEPKLLPARIPNLLINGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  L L+D PE  I ++++ I GPDFPT G I   ++ I+++YR 
Sbjct: 180 GMATNIPPHNLGEVVDGLLLLLDKPEADIAEIMQLIKGPDFPTAGFIT-GKQGIIDAYRT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  R+RAR  +E    G   I+VTEIPYQV KSRL+EKI EL+  KRI  + D+RDES
Sbjct: 239 GRGRIRMRARAQIETSKSGRETIIVTEIPYQVNKSRLLEKIVELVKEKRIEGIADLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R    + ++  ++  + ME  F +    L     P+V+ L  IL+ ++
Sbjct: 299 DREGMRIVVEIKRGEHAESILNRLYKFTPMEGTFGVINLALV-NNSPRVLNLKEILEYFI 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            HRRE++  R  F +    ++  IL+GL +A  N+DE+I  IR      + K  +++RF 
Sbjct: 358 EHRREIVIARIKFELANAIKKAHILEGLKVAIENLDEVIERIRASATGKEAKEDLIARFQ 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AIL++RL+ L  LE  +I  + + +LA  + +  +L +  +  + I  E+ E+
Sbjct: 418 FSDEQAQAILDMRLQRLTGLEIEKIIRDYEEVLALIDDLQDILANDSRVIDIIRTELHEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-----KEPITVVISNRGWIRSLKSHS 537
           +E ++       RRT   +           A             V  +     +S     
Sbjct: 478 REKYADP-----RRTIIIDDHEEIDLEDLIADEPTVITLTNDGYVKRTPADTYKSQHRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
                L  KEGD +       T + +++ +  G+ Y + A N+        G+AI   +D
Sbjct: 533 KGKVGLDIKEGDFVTDIFVCSTHEYLMIFTDRGRVYWIKAYNIPEQGRNSRGKAIVNFVD 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I T F    +     LL ++  G A     SE     +KG   + +  ++++  
Sbjct: 593 LEKDEKISTVFPVREFSEDKFLLFITKNGIAKKTPLSEYANIRKKGVNAINLDDDDELIQ 652

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV--ICFKICEG 708
           V+   G + V V       + F   ++  + R  +GV+  +  +           K  + 
Sbjct: 653 VMHTNGSNSVMVTTRFGASIHFEEQEVRAVGRVSRGVKGITLVNNDYVVSAETISKDIDP 712

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              +      Y +        L  RGG G+L  K   ++G  +
Sbjct: 713 SYILTVTDLGYGKRTITDEYRLQSRGGKGNLTIKTTTKNGLVV 755



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 69/186 (37%), Gaps = 10/186 (5%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 ++A++  + D L   +H + ++ +++ +  G +       + +       +   
Sbjct: 633 NIRKKGVNAINLDDDDELIQVMHTNGSNSVMVTTRFGASIHFEEQEVRAVGRVSRGV-KG 691

Query: 594 IDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----S 646
           I L +N  +V+A           +L V+  G        E    +R GK  L +     +
Sbjct: 692 ITLVNNDYVVSAETISKDIDPSYILTVTDLGYGKRTITDEYRLQSRGGKGNLTIKTTTKN 751

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFK 704
              ++ +  V GD + ++ +  K++      I    R  +GV+L    +D  I  V   K
Sbjct: 752 GLVVRGLQVVDGDEILLLSKEGKIIRLDSKHIRITGRNTQGVKLVDLSRDDRIISVAVAK 811

Query: 705 ICEGLT 710
             +   
Sbjct: 812 TDDEEE 817


>gi|3550423|gb|AAC34892.1| DNA gyrase A subunit [Methylovorus sp. SS1]
          Length = 846

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/779 (29%), Positives = 376/779 (48%), Gaps = 47/779 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LAL+ NPE ++++L+E I  PDFPT G I+     + E+YR GRG   +R R  V
Sbjct: 190 VVDACLALLKNPETTVDELIEIIPAPDFPTAG-IIYGTMGVKEAYRTGRGRVVMRGRTHV 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++       +++ E+PYQV K  LIEKIAEL+  K+I  + D+RDES +    V+    
Sbjct: 249 EDMEKGNRQALIIDELPYQVNKKSLIEKIAELVNEKKIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +  HRREV+ RR+ 
Sbjct: 309 RGEVPEVILNNLYKQTQLQDTFGMNMVALLD-GQPRLLNLKQMLEAFFGHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------------- 415
           F +   + R  +L+GL +A  N+DE+IA+I+    P                        
Sbjct: 368 FELGKAE-RGHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMSRTWTSPVVEEMLKRA 426

Query: 416 ---------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                          +  + + L++ Q   IL +RL+ L  LE+ +I +E   ++     
Sbjct: 427 AMEASRPEGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVIAD 486

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L   ++    I  E+  +++ F  S                        +      
Sbjct: 487 LLDILAKPERVTQMIVDELATIRQQFGDSCRSEIVHNAQDLSLEDLITPQDVVVTLSHTG 546

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP-AGN 579
            V        R+ +       A   KE D +     A+T D IL  S+ G+ Y L     
Sbjct: 547 YVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVYWLKYTKC 606

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +     +A +  +     ++         +D    + + +++G        E     R
Sbjct: 607 RKAAASAVQAYRQPLPAGRGREDQCHLPVKEFDENHFIFMATAQGTVKKTALVEFSNPRR 666

Query: 637 KGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            G   + +   + +       G + + +V    K + F  + +  M R  +GVR      
Sbjct: 667 AGIIAINLDEGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAMGRNTRGVRGMKLMP 726

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +     +  T + +    Y +           RG  G        R+G  + +
Sbjct: 727 KQRVISLLIAEDDKQTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIATSDRNGSVVGA 785



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 77/218 (35%), Gaps = 7/218 (3%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + + +    GR R   C +   +        +     TV  +      + +     + A+
Sbjct: 615 QAYRQPLPAGRGREDQCHLPVKEFDENHFIFMATAQGTVKKTALVEFSNPRR--AGIIAI 672

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
           +  EGD L  A   +  + I+L+S  GKA      ++ +   +   ++ +  +   + I 
Sbjct: 673 NLDEGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAMGRNTRGVRGMKLMPKQRVIS 732

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKMKLVVKVTG-D 659
                D    +LV +  G       S+   + R   G   +  S     +     V   D
Sbjct: 733 LLIAEDDKQTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIATSDRNGSVVGARLVNDED 792

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
            + ++     L+   + +I E+ R  +GV L +  +  
Sbjct: 793 EIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGENE 830


>gi|227523344|ref|ZP_03953393.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC
           8290]
 gi|227089450|gb|EEI24762.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC
           8290]
          Length = 850

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/761 (30%), Positives = 382/761 (50%), Gaps = 16/761 (2%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N +N        +  V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+
Sbjct: 8   NETNQGGDFPGRITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNEL 67

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVG+V+GK HPHGD +VY+S+VR+AQ F  RY L++G GNFG++DGD
Sbjct: 68  GVTPDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVNGHGNFGSVDGD 127

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR++++A  +L+ ++++ +DF   Y+  + EP V PS+FPNLL NG SGIA
Sbjct: 128 GAAAMRYTEARLSKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIA 187

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+  A   L+DNP+ +   L+E + GPDFPTGG +V  +  I ++Y 
Sbjct: 188 VGMATNIPPHNLSEVISAIHVLMDNPDATTADLMEVLPGPDFPTGG-VVMGKSGIRKAYE 246

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E    G   I+ TE+PY V K++LIE+IAEL   KRI  + DI DE
Sbjct: 247 TGRGSIILRAKVEIEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDE 306

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   V+    R    ++++ +++ L+ M+T F  NM  +     P+++ L  IL+ +
Sbjct: 307 SDREGMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVK-GTPRILSLKEILQYY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           L H+ EV+ RR+ + +Q    R  IL+GL IA  +IDEII IIR        K  +++ F
Sbjct: 366 LEHQVEVITRRTKYELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLITGF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q  AIL++RL  L  LE  +I  E + L+ + E   ++L+S  +    I  E+ E
Sbjct: 426 GLSDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEDFKAILSSRDRVNQIIYEELLE 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDL 540
           +++ F               +   D    +  ++       +        ++       +
Sbjct: 486 IQKKFGDERRTELLVGEVLSLEDEDLIEEEDVIVSLTHNGYIKRLPTTEFKAQNRGGRGV 545

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
             +   + D ++  +   T D +L  +  GK Y +    +       +   I  L+++N 
Sbjct: 546 QGMGVHDDDFVEQLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAKGIPIVNLLNINS 605

Query: 599 NQDIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            + I                LL V+  G       S+       G   + +   +++   
Sbjct: 606 GEKIEAVINVSDRKNDVQKDLLFVTLYGTVKRTPVSDFANIRSNGLIAIHLKEGDQLINA 665

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           + +    +V +       + F+   +  M R   GVR    ++     V    +      
Sbjct: 666 LIIDQNQNVIIGTHLGYAMSFNASDVRSMGRSATGVRGIRLRENDYV-VGADVLNPDSEV 724

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + + + +        +  RGG G        ++G    
Sbjct: 725 FIISEKGFGKRTPAADYPIKGRGGKGVKTANITEKNGPLSG 765



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 6/165 (3%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               +++ +  G A +  A ++ S       ++  I L  N  +V A V +   ++ ++S
Sbjct: 670 QNQNVIIGTHLGYAMSFNASDVRSMGRSATGVRG-IRLRENDYVVGADVLNPDSEVFIIS 728

Query: 619 SKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
            KG       ++     R GK      +   +     L      + + ++ +   ++ F 
Sbjct: 729 EKGFGKRTPAADYPIKGRGGKGVKTANITEKNGPLSGLTTVSGNEDIMLITDKGVMIRFG 788

Query: 675 IDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           I+ + +  R   GV L    +      +     +       A + 
Sbjct: 789 IEDVSQTGRSTLGVHLIRIDEDSKVSTMAKVEKQEDEASSDASKG 833


>gi|291541868|emb|CBL14978.1| DNA gyrase subunit A [Ruminococcus bromii L2-63]
          Length = 856

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/764 (31%), Positives = 400/764 (52%), Gaps = 30/764 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +  N      +  V L+  + + +L Y++S I  RA+PD+RDG KPVHRRI++ M+++GL
Sbjct: 3   NEQNQNKNSRIIDVDLQNEMRKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMNQIGL 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D    + K A  VG+V+G  HPHGD SVYD++VRLAQ F  RY L+ G GNFG++DGD  
Sbjct: 63  DPSKPYHKCADTVGQVLGSYHPHGDASVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDPP 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AAYRYTEARM++++  +L  ++++ VDF   Y++   EP V PS+FPNLL NG+SGIAVG
Sbjct: 123 AAYRYTEARMSKISLEMLTDIEKNTVDFMSNYDDRLKEPTVLPSRFPNLLVNGSSGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN+ E  +A   LIDNP+  + +++E + GPDFPTGG I+  R  I  +Y  G
Sbjct: 183 MATEIPPHNLGETIDAVCTLIDNPDAELAEIMECMPGPDFPTGG-IIMGRSGIRAAYATG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   VRA+  + E   G + I+VTE+PY+V K+RLIE IA+L+  KRI  + +I D S 
Sbjct: 242 RGKITVRAKTEIIEAKNGRYKIIVTELPYKVNKARLIENIADLVKDKRIEGISNIEDHSD 301

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                +     R   P +++  +F  + ++T F   M  +     P+++ L  +L+ ++ 
Sbjct: 302 RKGMHIEIDIKRDASPQIVLNQLFSYTQLQTTFGAIMLSIVD-GEPKILSLKEMLQCYIE 360

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
            + EV+ RR+ F ++    R  IL+GL IA   IDE+I IIRN       K  ++ RF L
Sbjct: 361 FQAEVIRRRTDFDLKKARDRAHILEGLKIALDFIDEVIKIIRNSKDTASAKAGLMERFGL 420

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            + Q  AI+ +RL  L  +E+ +I+ E+  L A+ E+   +L S  +Q   +  EI +++
Sbjct: 421 DDVQAQAIVQMRLGQLTNMEQTKIEDEIAALHAKIEEYLEILASEPRQLEIVKEEIMQIR 480

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
             ++       RRT  C           + +I +E   + ++  G+++          + 
Sbjct: 481 NKYADP-----RRTEIC---AVSGEVDIEDLIPQEECVLTLTQFGYVKRLSADTYKIQRR 532

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LL 593
               +S +  +E D        ++ D +L  +  G+ Y L    +  G    + +    L
Sbjct: 533 GGRGVSGMSRREEDIAAEMFVINSHDYVLFFTDKGRVYRLKCYEVPEGSRQSKGVNIANL 592

Query: 594 IDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           I ++ ++ + +      +D    L++V+ +G    +E +    + + G   L+++  +++
Sbjct: 593 IPISPDEKVTSMIRVPEFDEEKYLVMVTRQGIIKRIELNAYNTSRKGGLIALELNEGDEL 652

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V    G+  V +  +    + F+   I  M R  +GV+  + K+G     +   + EG
Sbjct: 653 AWVRMTDGNSQVIIATKKGMAIRFNETDIRAMGRQARGVKAMALKEGDCVVGMSV-VREG 711

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  +   Y R  +     +  RGG G        + G   +
Sbjct: 712 GLVLTVSETGYGRLSSPDDYRVQSRGGKGLTNYH-TEKYGDVAA 754



 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 78/261 (29%), Gaps = 57/261 (21%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                     + ++    ++E   V+++ +G I+                          
Sbjct: 593 IPISPDEKVTSMIRVPEFDEEKYLVMVTRQGIIKR------------------------- 627

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                                 L +     +   + ++LN   ++    + D   ++++ 
Sbjct: 628 --------------------IELNAYNTSRKGGLIALELNEGDELAWVRMTDGNSQVIIA 667

Query: 618 SSKGNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS 674
           + KG A    E++I A     +G   + +   + +  +  V  G  V  V E     + S
Sbjct: 668 TKKGMAIRFNETDIRAMGRQARGVKAMALKEGDCVVGMSVVREGGLVLTVSETGYGRLSS 727

Query: 675 IDQIPEMSR-GKGVRLQSY---KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            D     SR GKG  L +Y   K G ++ +    + + +     +              +
Sbjct: 728 PDDYRVQSRGGKG--LTNYHTEKYGDVAAIKVVNLDDDII--IISEEGIIIRIAAESIRV 783

Query: 731 GKRGGVGSLVPKGFPRSGKFL 751
             R   G  V K      + +
Sbjct: 784 CARPSKGVTVMKVNG-DDRVV 803


>gi|259502125|ref|ZP_05745027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri
           DSM 16041]
 gi|259169938|gb|EEW54433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri
           DSM 16041]
          Length = 835

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/760 (30%), Positives = 391/760 (51%), Gaps = 30/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   +  V L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +
Sbjct: 1   MSNRITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGDSAAA RYT
Sbjct: 61  KKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ +++D VDF   Y+  + EP V P++FPNLL NG SGIAVGMAT+IP
Sbjct: 121 EARMSKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  A   L++NP+++I +L++ + GPDFPTGG +V  +  I ++Y  GRG   V
Sbjct: 181 THNLGEVISAIHMLMNNPDVTIPELMKALPGPDFPTGG-VVMGKAGIRKAYETGRGSIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE   G   I+V EIPY V K+ LI +IA+L   K I  + D+ DE+  D   +
Sbjct: 240 RAKVDIEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R    ++++ +++ ++ M+T F  NM  +     P+++ L  IL+ +L H+ +V+
Sbjct: 300 VIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIV-NGAPKILSLKQILQYYLEHQEDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVD 429
            RR+ F ++    R+ I++GL IA  +IDEII IIR     +      +  + L++ Q  
Sbjct: 359 RRRTEFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELMGNYGLSDRQAQ 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE  +I++E   L         +L   ++    I  E+ E+++ F   
Sbjct: 419 AILDMRLVRLTGLEREKIEAEYQKLTEAIADYKDILAHKERINQIIYDELMEIQKKFGD- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
               +RRT              + +IE++ I V +++ G+I+                + 
Sbjct: 478 ----KRRTEL--QVGDITNIEDEDLIEEQDIIVTLTHNGYIKRLPVDEFKSQHRGGRGVK 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHN 599
            +     D ++  + + T D +L  +  GK Y++    +        G  I  L++++  
Sbjct: 532 GMGVHNDDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPEYGRSAQGIPIINLLNIDSQ 591

Query: 600 QDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           + I           D    L   +  G        E       G   + +  ++++  V 
Sbjct: 592 EKISAVINVSHETNDDDKFLFFTTKYGTVKRTPVPEFKNIRSNGLKAINLHDDDELMDVD 651

Query: 655 KVTGDHVAVV-GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWI 712
            +      ++   N   L F+   +  M RG  GVR    +D     +    + +    +
Sbjct: 652 VIEDQQTMIIGTRNGYALSFNSAVVRSMGRGAAGVRGIRLRDHDFV-IGAAPLHQDDNVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   + +        +  RGG+G        ++G  + 
Sbjct: 711 VISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKNGPLVG 750



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/494 (9%), Positives = 129/494 (26%), Gaps = 41/494 (8%)

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + +       + +     ++   + I +         +    +   + A+    ++ 
Sbjct: 318 KMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQEDVVRRRTEFDLKKAQSRLHIVE 377

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE-----WLAHRR 369
               +LD    + +I   S         +         Q   +  +              
Sbjct: 378 GLRIALDHIDEIINIIRQSQTSEVAKGELMGNYGLSDRQAQAILDMRLVRLTGLEREKIE 437

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               + +       D      +   I Y  + EI     ++ + +  +    ++ +  + 
Sbjct: 438 AEYQKLTEAIADYKDILAHKERINQIIYDELMEIQKKFGDKRRTELQVGDITNIEDEDLI 497

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL---LNSGKQQWNQIACEIREVKEIF 486
              ++ + +L      +     +     +         +++       I+    ++   F
Sbjct: 498 EEQDI-IVTLTHNGYIKRLPVDEFKSQHRGGRGVKGMGVHNDDFIEQLISSSTHDLLLFF 556

Query: 487 ----------SKSTDLGRRRTT---------FCEVSRADKATLQQAMIEKEPITVVISNR 527
                             R                 +             +   +  + +
Sbjct: 557 TNSGKVYSMKGYEVPEYGRSAQGIPIINLLNIDSQEKISAVINVSHETNDDDKFLFFTTK 616

Query: 528 GWIRSL-------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
                           S  L A++  + D L           +++ + +G A +  +  +
Sbjct: 617 YGTVKRTPVPEFKNIRSNGLKAINLHDDDELMDVDVIEDQQTMIIGTRNGYALSFNSAVV 676

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
            S      A    I L  +  ++ A        +LV+S  G       +E     R G  
Sbjct: 677 RSMGRGA-AGVRGIRLRDHDFVIGAAPLHQDDNVLVISENGFGKQTPAAEYPIKGRGGLG 735

Query: 641 FLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
              V        +  +  V GD  + +V +   ++ F I+ + +  R   GV L    DG
Sbjct: 736 VKTVNVTKKNGPLVGMTTVAGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDG 795

Query: 696 GISDVICFKICEGL 709
                +     E  
Sbjct: 796 AKVATMAKVEKEDD 809


>gi|304382901|ref|ZP_07365383.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii
           DSM 16973]
 gi|304335926|gb|EFM02174.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii
           DSM 16973]
          Length = 863

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/764 (28%), Positives = 376/764 (49%), Gaps = 20/764 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDQDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMQGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VG+V+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E I+  +++D VD  D ++    EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHIMDDLEKDTVDMDDNFDGTLKEPRVMPTKVPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNP+I  E L+ YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPDIDTEGLMHYIKAPDFPTGAYIY-GIQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   +RA+  + E       IVVTEIPY V K++LIE IA+L+   +I  + ++ DES
Sbjct: 240 GKGRVVIRAKAEI-ESHESHDKIVVTEIPYGVNKAQLIEYIADLVKEGKIDGISNVNDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALV-NGRPRLLTLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            HR +V  RR+ F ++    R  IL+GL+IA  NIDE++ +IR    P         RF 
Sbjct: 358 EHRHDVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVHLIRASKAPSDAQRALEKRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L      + S+L+  +     +  E++ V
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMEQLHAEYEELEKLIAYLQSILDDPELCKKVMKDELQAV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +        + ++               +       +  +     +      V    
Sbjct: 478 KEKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHLGYIKRTALSEFKEQARGGVGSRG 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
              +E D  +    A   + +L  +  G+ Y L    +  G    +  AIQ +++++ + 
Sbjct: 538 SRTREEDFTEFIYPATMHNTMLFFTRKGRCYWLKCYEIPEGTKDSKGRAIQNMLNIDSDD 597

Query: 601 DIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +             + ++  ++  +  G                G   + +   +++  
Sbjct: 598 SVNAFLRLKGLDDEAFLNSHYVVFATKNGVVKKTLLKAYSRPRANGVNAINIVDGDEVVN 657

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEG 708
           V    G + + +   N + + F    +  M R   GVR       D  +  ++     + 
Sbjct: 658 VRLTNGSNELILANRNGRAVRFDEKAVRTMGRVSTGVRGMRLDGGDDEVVGMVVVNEADK 717

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +  +   Y +  +        RGG G        ++G+ +S
Sbjct: 718 ESVMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSITDKTGRLVS 761



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 599 NQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLV 653
           + ++V   V +   K  ++VVS  G        +     R GK    +S  +   ++  +
Sbjct: 703 DDEVVGMVVVNEADKESVMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSITDKTGRLVSI 762

Query: 654 V-KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY-KDGGISDVICFKICEGLT 710
                 + + ++ ++   +  ++  +  M R  +GVRL +  K   +   +C  +   L 
Sbjct: 763 KNVTDENDLMIINKSGITIRLAVSNVRVMGRATQGVRLINLTKKNDVIASVCKVMSSELE 822


>gi|224370718|ref|YP_002604882.1| GyrA [Desulfobacterium autotrophicum HRM2]
 gi|223693435|gb|ACN16718.1| GyrA [Desulfobacterium autotrophicum HRM2]
          Length = 870

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/761 (33%), Positives = 397/761 (52%), Gaps = 31/761 (4%)

Query: 12  LVEENVKA-VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           L +E +   +S+   +++ YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  
Sbjct: 2   LNQEEITNTISIETEMKKSYLEYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELRNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+E  +EP V P+KFP LL NG+SGIAVGM T+
Sbjct: 122 YTEVRMKKIAHQMLADLEKETVDFIPNYDETMAEPSVLPTKFPALLVNGSSGIAVGMTTN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL++ P+I+IE+L+ +I GPDFPT G I   R+ I E+Y  GRG  
Sbjct: 182 IPPHNIGEVVQGLIALLEKPDITIEELMIHIPGPDFPTYGKIY-GRKGIHEAYTTGRGII 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            VRA+  VE      +  IVVTE+PYQV K++L+EKIAEL+ AK I     +RDES    
Sbjct: 241 TVRAKVEVEVNSKTKAETIVVTELPYQVNKAKLVEKIAELMRAKVIEGASYVRDESDRQG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R   PD+++  ++  ++M T F +    +     P++  L  +L+++L HRR
Sbjct: 301 MRIAIGLKRDQFPDVVINQLYKHTNMHTSFGIIFLAVV-NNRPELFTLKELLEQFLNHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ F  +    R  IL+GL+ A  N+D ++A+IR    P+      V  F LT+ 
Sbjct: 360 SVIIRRTLFDQKKAMDRAHILEGLIKALDNLDAVVALIRASQSPEEAKAGLVQSFELTQI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RL+ L  LE  +I  E   LL +      +L+S +   + I  E+ E+K+ +
Sbjct: 420 QAQAILEMRLQRLTGLERDKINEEYAQLLKDLAWYQEILSSDQVVRDIIKQELTELKDEY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT   E   A      + +I +E + V ++  G+I+               
Sbjct: 480 QD-----DRRTQIVE---ATGEINIEDLIAEEDMVVTVTRSGYIKRNPITLYASQHRGGK 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
             +A+  K+ D ++    A T    L ++  GK Y      L        G+AI  L++ 
Sbjct: 532 GKTAMGTKDEDFVEHLFVASTHHTFLFITNLGKVYQSKVYELPMAGRTSLGKAIVNLLNF 591

Query: 597 NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + + T            +++ +  G     +          G   +K++ ++++   
Sbjct: 592 EQGEKLATVLTVPEFVEDRYVVMATKLGRVKKTDLMAYSRPRSGGLIGIKLADDDELIAA 651

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
               G   + +  E  K++ F  + +   +RG  GVR      G    V    +  G T 
Sbjct: 652 GITDGKTDIFLGSEGGKVIRFDENDVRTTARGSMGVRGMRIDPGSCV-VGMEVLNHGQTL 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +      Y +           RGG G    +   R+GK ++
Sbjct: 711 LTVTENGYGKRTLIQEYRSQTRGGKGVFSIRTSERNGKMVA 751



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 5/108 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---- 649
           + ++    +V   V +    LL V+  G        E  + TR GK    + + E+    
Sbjct: 690 MRIDPGSCVVGMEVLNHGQTLLTVTENGYGKRTLIQEYRSQTRGGKGVFSIRTSERNGKM 749

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           + L++    D + +V +  KL+   I  I  +SR  +GV+L +   G 
Sbjct: 750 VALLLVEDEDELMLVTDGGKLIRTGIQDISVISRNTQGVKLINLSPGE 797


>gi|300728031|ref|ZP_07061406.1| DNA gyrase, A subunit [Prevotella bryantii B14]
 gi|299774719|gb|EFI71336.1| DNA gyrase, A subunit [Prevotella bryantii B14]
          Length = 876

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/772 (29%), Positives = 393/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   +++ Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDNDRILRINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                A+KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSNNAYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYLLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E I+  +D+D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHIMDDLDKDTVDMTNNFDDTLKEPSVMPTKIPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNP+I ++ L++YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIY-GIQGVRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E       IVVTEIPY V K++LIE IAEL+   +I  + ++ DES
Sbjct: 240 GRGRVVMRAKAEI-ESDDNHDKIVVTEIPYGVNKAQLIEYIAELVKEGKIDGISNVNDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDLKRDSNANVILNKLFKMTALQSSFSVNCIALVK-GRPRLLGLKDCVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P         RF 
Sbjct: 358 EHRHDVTIRRTQYELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L    +  + +L+  +     +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNQILSDPELCKKVMKDELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE +  +     RRT   E+  + +    +     +P+ + +S+ G+I+           
Sbjct: 478 KEKYGDA-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHLGYIKRTPLSDFREQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       +E D  +    A     +L+ +  G+ Y L    +  G  + +  AIQ 
Sbjct: 530 RGGVGSKGARTREQDFTENIYPATMHQTMLIFTKKGRCYWLKCYEIPEGDRNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++++  +  +             + ++  ++  +  G                G   + +
Sbjct: 590 MLNIEKDDAVNGFLRLRTLTDEEFINSHYVIFATKNGTVKKTCLEAYSRPRANGVIAINL 649

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDV 700
           +  +++  V    G+  + +   N +   F  + I  M R   GVR       D  +  +
Sbjct: 650 AEGDELVDVRLTNGENELIIANRNGRACRFHENTIRTMGRTATGVRGMKLDGDDDAVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     +  T +  + + Y +        +  RGG G        ++G+ ++
Sbjct: 710 VPVNNADVETVMVVSEQGYGKRSQVEDYRITNRGGKGVKTLAITEKTGRLVA 761



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/454 (10%), Positives = 140/454 (30%), Gaps = 28/454 (6%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPK--NRSLDPDLLMESIFMLSDMETRFPLN 342
           +       +R  +LE +         +V   +      D    +E  F L +++++  ++
Sbjct: 369 QYELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQRFELDELQSKAIVD 428

Query: 343 MNVLSMGRVP--QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           M +  +  +   Q+      L+  + +  ++L      +    D  +E+ +    A    
Sbjct: 429 MRLSQLTGLRMDQLHAEYEELERMIDYYNQILSDPELCKKVMKDELLEVKEKYGDARRTE 488

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDA---ILNLRLRSLRKLEEYQIKSELDNLLAE 457
            +  +   N +   P      +++         + + R ++   +     ++   +    
Sbjct: 489 IKYSSEEFNPEDFYPNDPVVITVSHLGYIKRTPLSDFREQARGGVGSKGARTREQDFTEN 548

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                                ++  +         GR       + + D       +   
Sbjct: 549 IYPATMHQTMLIFTKKGRCYWLKCYEIPEGDRNSKGRAIQNMLNIEKDDAVNGFLRLRTL 608

Query: 518 EPITVVISNRGWIRSLKSHSV-------------DLSALHFKEGDSLKIALHAHTTDRIL 564
                + S+     +                    + A++  EGD L      +  + ++
Sbjct: 609 TDEEFINSHYVIFATKNGTVKKTCLEAYSRPRANGVIAINLAEGDELVDVRLTNGENELI 668

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLVVSSKGN 622
           + + +G+A       + +       ++ +     +  +V     ++     ++VVS +G 
Sbjct: 669 IANRNGRACRFHENTIRTMGRTATGVRGMKLDGDDDAVVGMVPVNNADVETVMVVSEQGY 728

Query: 623 AFIVEESEIIANTRKGKTFLKV---SSEEKMKLVV-KVTGDHVAVVGENRKLLIFSIDQI 678
               +  +     R GK    +       ++  +      + + ++ ++   +  S+  +
Sbjct: 729 GKRSQVEDYRITNRGGKGVKTLAITEKTGRLVAIKNVTDENDLMIINKSGIAIRLSVADV 788

Query: 679 PEMSRG-KGVRLQSY-KDGGISDVICFKICEGLT 710
             M R  +GVRL +  K   I   +C  +   L 
Sbjct: 789 RVMGRATQGVRLINLSKKNDIIASVCKVMSSELE 822


>gi|86142208|ref|ZP_01060718.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217]
 gi|85830960|gb|EAQ49417.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217]
          Length = 845

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/754 (30%), Positives = 389/754 (51%), Gaps = 19/754 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D+D VD    +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEEMLADIDKDTVDHTLNFDDTLKEPTVLPTRIPGLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +A I+N +I I++L+++I  PDFPTGG I    + + E+++ GRG   +RA
Sbjct: 185 NLTEVVNGTIAYIENNDIEIDELMQHITAPDFPTGGTIY-GYDGVREAFKTGRGRVVLRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV  G  CI+V+EIPYQV K+ +I+K A+L+  K+I  +  IRDES      +++
Sbjct: 244 KAIIEEVK-GRECIIVSEIPYQVNKADMIKKTADLVNEKKIDGIASIRDESDRKGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  + +++ F +N   L     P+++ L  ++  ++ HR EV+ R
Sbjct: 303 VLKRDAIPNIVLNTLFKYTALQSSFSVNNIALVK-GRPEMLNLKDMIHHFVDHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IA+IR     +        RF LTE Q  AI
Sbjct: 362 RTEYELKKAEDRAHILEGLIIASDNIDEVIALIRASSNAEEARQKLIDRFELTEIQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++ E + LL   E +  +L   +++ + I  E+ E++  +     
Sbjct: 422 VEMRLRQLTGLEQDKLREEYEELLKTIEDLKDILARKERRMDIIKEELEEIRAKYGDERR 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                              +  +       V  ++    ++     V       +  D L
Sbjct: 482 TDIDIAGGDVSITDLIPDEKVVLTISHAGYVKRTSLMEYKTQNRGGVGQKGSTTRNEDFL 541

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD 609
           +          ++  +  GK + +    +  G    +  AIQ LI++  +  +      +
Sbjct: 542 EHLFVGTNHQYLIFFTEKGKCFWVRVFEIPEGSKTSKGRAIQNLINIEPDDKVKAFICTN 601

Query: 610 S--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                    +  +++ + KG        +       G   + +   +++      TGD  
Sbjct: 602 DLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEGDELLAAKLTTGDSQ 661

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRS 718
           V +  ++ K + F  ++   M R   GVR  +  D     +    + +     +  +   
Sbjct: 662 VMLAVKSGKAIRFEEEKTRPMGRNASGVRGITLADDNDEVIGMVAVNDPESNVLVVSENG 721

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +        +  RGG G        ++G  ++
Sbjct: 722 YGKRSLVEDYRVTNRGGKGVKTISVTEKTGNLVA 755



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 75/217 (34%), Gaps = 8/217 (3%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           ++   +       ++  +   V  ++       +++   ++A+  KEGD L  A      
Sbjct: 602 DLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPRTN--GINAITIKEGDELLAAKLTTGD 659

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSS 619
            +++L    GKA             +   ++ +   + N +++      D    +LVVS 
Sbjct: 660 SQVMLAVKSGKAIRFEEEKTRPMGRNASGVRGITLADDNDEVIGMVAVNDPESNVLVVSE 719

Query: 620 KGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
            G        +     R GK    +     +   + +      D + ++ ++   +   +
Sbjct: 720 NGYGKRSLVEDYRVTNRGGKGVKTISVTEKTGNLVAINNVTDEDDLMIINKSGIAIRMEV 779

Query: 676 DQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTW 711
            ++  M R  +GVRL + K G     +     +    
Sbjct: 780 SELRVMGRATQGVRLINLKKGDTIAAVTKVKKDEDDI 816


>gi|254487742|ref|ZP_05100947.1| DNA topoisomerase IV, A subunit [Roseobacter sp. GAI101]
 gi|214044611|gb|EEB85249.1| DNA topoisomerase IV, A subunit [Roseobacter sp. GAI101]
          Length = 773

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/774 (51%), Positives = 536/774 (69%), Gaps = 32/774 (4%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +I++ + L   NV    LR AL +RYL YALSTI  RA+PD RDG KPVHRRI++AM E+
Sbjct: 3   DITDPSDLDPRNVSE-PLRLALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMREL 61

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD
Sbjct: 62  RLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGD 121

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           + AA RYTEARMT VAE +L+G++E+AVDFR+ Y+   +EPVV P++FPNLLANG+SGIA
Sbjct: 122 NPAASRYTEARMTAVAEAMLEGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGIA 181

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +A + LI  PE   + LL ++ GPDFPTGGIIVE  E+I  +YR
Sbjct: 182 VGMATNIPPHNISELVDACIHLIKTPEARDDTLLNFVPGPDFPTGGIIVEPPENIANAYR 241

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+GGFR+R RW VE++GRG W IV+TEIPYQVQKS+LIEKIAELI  K+IP+L D+RDE
Sbjct: 242 TGKGGFRLRCRWNVEDLGRGVWQIVITEIPYQVQKSKLIEKIAELIQLKKIPILGDVRDE 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SAED+R+++ P+++++DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+ +
Sbjct: 302 SAEDIRLIIEPRSKNVDPEVLMGMLYRSSDLEVRFSLNMNVLIDGLTPKVCSMKEVLRAF 361

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-- 422
           L HRREVL RRS+ R++ ID R+E+L+G +IA+LN+D +I IIR +  PK  +++     
Sbjct: 362 LDHRREVLQRRSAHRLEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDADPKAALMAEDWGK 421

Query: 423 ---------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                                LTE Q DAILN+RLRSLR+LEE ++  E   L+AE+  +
Sbjct: 422 KHSRATDESDYVPPAPTTENSLTEIQADAILNMRLRSLRRLEEMELLREQSELMAERAGL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDL-----GRRRTTFCEVSRADKATLQQAMIE 516
           + LL+S   QW+ I  ++R  K+ F K   L     G RRTTF E +   +    +AMI+
Sbjct: 482 EDLLDSEALQWDSIIEQLRATKKQFGKDWKLDGVNVGLRRTTFAE-AGEIEDVPLEAMID 540

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           +EPITVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+  ++G+ YT+ 
Sbjct: 541 REPITVVCSEMGWIRAMTGHIDLNRELKFKDGDGPRFVFHAETTDRLLVFGSNGRFYTIG 600

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A +L  GRG GE ++L++DL ++  IV  F++    KLLV SS G+ F+V E E++A TR
Sbjct: 601 AVSLPGGRGMGEPLRLMVDLPNDVQIVDIFIHKPGRKLLVASSAGDGFVVPEDEVLAQTR 660

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG 696
            GK  L V  + K  +   + G+ VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG
Sbjct: 661 SGKQVLNVRGDAKAMICAPIKGEAVAVVGENRKVLVFGLDELPEMGRGKGVRLQKYKDGG 720

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +SD   F + EGL+W+D AGR   R+E+DL  W GKR   G + P+GFPR  +F
Sbjct: 721 MSDATTFTLSEGLSWLDPAGR--TRTESDLTEWTGKRASAGRMAPRGFPRDNRF 772


>gi|237815195|ref|ZP_04594193.1| DNA topoisomerase IV, A subunit [Brucella abortus str. 2308 A]
 gi|237790032|gb|EEP64242.1| DNA topoisomerase IV, A subunit [Brucella abortus str. 2308 A]
          Length = 775

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 436

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 437 EPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 496

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 497 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 556

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 557 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 616

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 617 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 676

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 677 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRSFAIADGLSW 736

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 737 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775


>gi|240145737|ref|ZP_04744338.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|257202153|gb|EEV00438.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|291536985|emb|CBL10097.1| DNA gyrase subunit A [Roseburia intestinalis M50/1]
 gi|291539811|emb|CBL12922.1| DNA gyrase subunit A [Roseburia intestinalis XB6B4]
          Length = 874

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/766 (31%), Positives = 401/766 (52%), Gaps = 34/766 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  + + +  V L+  +E  Y+ YA+S I +RA+PD+RDG KPV RR++++M E+     
Sbjct: 2   DDKIFDQIHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++++  +L  + +D VDF   ++E + EP V PS++PNLL NGT+GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADIGKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           +IP HN++E+  A + +IDN      +  IE+LL  + GPDFPTGG+I+     I E+YR
Sbjct: 182 NIPPHNLREVINAVVKIIDNKVEEDRDTDIEELLSIVKGPDFPTGGMIL-GTAGINEAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K++  + D+RDE
Sbjct: 241 TGRGKVRVRAITDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKVDGITDLRDE 300

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      +     R ++P++++  ++  + ++  F + M  L     P+V+ L  +LK +
Sbjct: 301 SDRQGMRICIELRRDVNPNVVLNLLYKHTQLQDTFGVIMLALV-NNEPKVLNLYDMLKYY 359

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRF 421
           L H+ EV+ RR+ + +   + R  IL+GLLIA  NIDE+I+IIR+    +     ++ RF
Sbjct: 360 LIHQEEVVTRRTKYELNKAEERAHILEGLLIALDNIDEVISIIRSSQNTQEAKSRLMERF 419

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL++ Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K+    I  EI  
Sbjct: 420 SLSDAQSQAIVDMRLRALTGLEREKLEAEYAELMDRIAELRAILADKKKLLGVIRTEILL 479

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------- 533
           + + +        RRT+       +     + +I      + ++  G+I+ +        
Sbjct: 480 IADKYGD-----DRRTSI---GFDEYDISMEDLIPVTNTVITMTKLGYIKRMSLDNFRAQ 531

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQ 591
                 +  +   + D ++  L   +   ++  +  G+ Y + A  +        G AI 
Sbjct: 532 NRGGKGIKGMETIDDDYIEELLMTTSHHYMMFFTNTGRVYRIKAYEIPEASRTARGTAIV 591

Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+ L   + I        Y     L + + KG       ++     + G   + +  ++
Sbjct: 592 NLLQLQPGEKITAVIPIREYTEGHFLFMATKKGIVKKTPITDYANVRKTGLAAISLREDD 651

Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
           ++  V K   +  V +V +  + + F    + +  R   GV   +  DG     +  +  
Sbjct: 652 ELIEVKKTDNNQDVFLVTKYGQCIRFKETDVRKTGRTSMGVIGMNLTDGDEVIGMQMQ-S 710

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +  + +   +           RGG G    K   ++G  + 
Sbjct: 711 QGDALMIVSEKGLGKCTLISEFTTQNRGGKGVKCYKITEKTGNIVG 756



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 76/279 (27%), Gaps = 21/279 (7%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +     Y +       +   +  +    S   +   I   ++       +  +       
Sbjct: 554 MTTSHHYMMFFTNTGRVYRIKAYEIPEASRTARGTAIVNLLQL------QPGEKITAVIP 607

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
             E +      +       +   +                 L+A+  +E D L       
Sbjct: 608 IREYTEGHFLFMATKKGIVKKTPITDYANVRKT-------GLAAISLREDDELIEVKKTD 660

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               + L++  G+       ++         +  + +L    +++   +      L++VS
Sbjct: 661 NNQDVFLVTKYGQCIRFKETDVRKTGRTSMGVIGM-NLTDGDEVIGMQMQSQGDALMIVS 719

Query: 619 SKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIF 673
            KG       SE     R GK      +   +   +  V  V  D  + ++     ++  
Sbjct: 720 EKGLGKCTLISEFTTQNRGGKGVKCYKITEKTGN-IVGVKAVNQDNELMLITTEGIIIRI 778

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +     + R   GV+L +  +      I     +    
Sbjct: 779 KVSDTTLLGRITSGVKLINLDENVTVASIAKVREDKSLI 817


>gi|210614353|ref|ZP_03290172.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787]
 gi|210150697|gb|EEA81706.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787]
          Length = 814

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/770 (30%), Positives = 395/770 (51%), Gaps = 37/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  + L+  +EE Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MEDN---IFDKVHDIDLKKTMEESYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   ++++ VDF   ++E + EP V P++FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMELTADINKNTVDFTPNFDETEKEPSVLPARFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN+ E+  A + +ID+      E +IE +L+ I GPDFPTG +I+     I 
Sbjct: 178 GMATNIPPHNLHEVISAVVKIIDDQIDENGETTIEDILQIIKGPDFPTGAMIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D
Sbjct: 237 EAYRTGRGKIRVRAVTDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D+S  +   +     R ++ ++++  ++  + ++  F + M  L     P+VM +  +
Sbjct: 297 LSDQSNREGMRICIELRRDVNANVILNQLYKHTQLQDTFGVIMLALV-NNEPKVMNILDM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVM 417
           L  +L H+ EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR     +     +
Sbjct: 356 LNYYLKHQEEVVTRRTQYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKNTQIAKEGL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  F LTE Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K     I  
Sbjct: 416 IEAFELTEVQAQAIVDMRLRALTGLEREKLETEYAELMKRIGELKAILADRKLLLGVIKE 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           EI  +   +S       RRT+       +     + +I ++ + + ++  G+I+ +    
Sbjct: 476 EILIIDGKYSDE-----RRTSI---GFDEFDISMEDLIPRQDVVITMTKLGYIKRMTVDT 527

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   + D ++      T   I+  +  G+ Y L    +        G
Sbjct: 528 FKSQNRGGKGIKGMQTIDEDYVEELFMTSTHHYIMFFTNTGRVYRLKGYEIPEASRTARG 587

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            AI  L+ L  ++ I        Y     L + + KG       ++     + G   + +
Sbjct: 588 TAIINLLQLMPDEKITAMIPIDEYKEGQYLFMATKKGLVKKTPITDYANVRKTGLAAITL 647

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             E+++  V     D  + +V +  + + F+   +    R   GVR  +  D      + 
Sbjct: 648 REEDELIEVKFTDQDQDIILVTKYGQCIRFNEKDVRATGRTSMGVRGMNLADRDEVVGMQ 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +G   +  + +   +           RGG G    K   ++G  + 
Sbjct: 708 L-HTQGTHLLIVSEKGMGKRTAMEEFTSQNRGGKGVKCYKITEKTGNVVG 756



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 79/270 (29%), Gaps = 21/270 (7%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +     Y +       +   +  +    S   +   I   ++ +        +       
Sbjct: 554 MTSTHHYIMFFTNTGRVYRLKGYEIPEASRTARGTAIINLLQLM------PDEKITAMIP 607

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
             E        +       +   +                 L+A+  +E D L       
Sbjct: 608 IDEYKEGQYLFMATKKGLVKKTPITDYANVRKT-------GLAAITLREEDELIEVKFTD 660

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               I+L++  G+       ++ +       ++ + +L    ++V   ++     LL+VS
Sbjct: 661 QDQDIILVTKYGQCIRFNEKDVRATGRTSMGVRGM-NLADRDEVVGMQLHTQGTHLLIVS 719

Query: 619 SKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIF 673
            KG        E  +  R GK      +   +   +  V  V  D  + ++     ++  
Sbjct: 720 EKGMGKRTAMEEFTSQNRGGKGVKCYKITEKTGN-VVGVKAVNEDNEIMIINTEGIVIRM 778

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             + I  + R   GV+L +  D      I 
Sbjct: 779 ECNSISVLGRITSGVKLINLNDNATVASIA 808


>gi|324991112|gb|EGC23046.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK353]
          Length = 826

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGA-LVMGKSGIYRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +         +++F L+E Q 
Sbjct: 366 VIRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  MSR   GVR  + +DG         I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGDQVVGAGV-IAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757


>gi|212218851|ref|YP_002305638.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154]
 gi|215918987|ref|NP_819556.2| DNA gyrase subunit A [Coxiella burnetii RSA 493]
 gi|206583872|gb|AAO90070.2| DNA gyrase subunit A [Coxiella burnetii RSA 493]
 gi|212013113|gb|ACJ20493.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154]
          Length = 850

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/780 (34%), Positives = 412/780 (52%), Gaps = 63/780 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+    KKSARIVG+VIGK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE R+++ A  ++ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++++E+L+ +I GPDFPT G I+  R  IV++Y+ GRG   VRA+  +E    G 
Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAG-IINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVV E+PYQV K+RL+EKI EL+  KRI  +  +RDES +    ++   +R  + +++
Sbjct: 258 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 317

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L     P+V+ L  +L  +L HRREV+ RR+ F ++    
Sbjct: 318 LNNLYAQTQLQTVFGINMVALD-NGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 376

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP-------------------------------- 413
           R  IL+GL +A  NIDE+IA+I+    P                                
Sbjct: 377 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 436

Query: 414 -----KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                  +    + L+  Q  AIL+LRL  L  LE  +I+ E   ++ + E++ ++++  
Sbjct: 437 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 496

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  E+  VKE F        RRT   +          + +I +E   V +S+ G
Sbjct: 497 DKLHEVIREELIAVKEQFGDE-----RRTVIID---DHSDLTHEDLIPEEHRVVTLSHEG 548

Query: 529 W--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +         ++         A   KE D +K  L A++ D IL  ST GK Y L    +
Sbjct: 549 YIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQV 608

Query: 581 LS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
                   G  I  L+ L  ++ I        YD +  + + +++G    V  +E     
Sbjct: 609 PQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPR 668

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
            KGK  L ++  +++  V    G   + +V +  K + F   ++ EM R  +GVR    K
Sbjct: 669 TKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKLK 728

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  +     +G   + +    Y +           RGG G +  +   R+GK +S+
Sbjct: 729 AKQNVIALIVVKPKG-NILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSA 787



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 6/179 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  +    AL   EGD L           I+L++  GKA       +         ++  
Sbjct: 666 QPRTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRG- 724

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEK 649
           I L   Q+++   V      +L  +  G        +  +  R G+  + +     + + 
Sbjct: 725 IKLKAKQNVIALIVVKPKGNILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKV 784

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +        D V ++ +   L+   +++I +M R  +GVRL       +   +     E
Sbjct: 785 VSAAQVFDDDDVLLISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAE 843


>gi|306841998|ref|ZP_07474672.1| DNA topoisomerase IV, A subunit [Brucella sp. BO2]
 gi|306287926|gb|EFM59343.1| DNA topoisomerase IV, A subunit [Brucella sp. BO2]
          Length = 770

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/759 (60%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIERRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 492 WKKISAEIKAVREKFGPTTRLGKRRTTFAHAPMHDLEDIHQAMIEREPVTIVVSEKGWLR 551

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 731

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|209364105|ref|YP_001424883.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111]
 gi|207082038|gb|ABS77442.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111]
          Length = 850

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/780 (34%), Positives = 411/780 (52%), Gaps = 63/780 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+    KKSARIVG+VIGK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE R+++ A  ++ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++++E+L+ +I GPDFPT G I+  R  IV++Y+ GRG   VRA+  +E    G 
Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAG-IINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV  E+PYQV K+RL+EKI EL+  KRI  +  +RDES +    ++   +R  + +++
Sbjct: 258 SLIVAHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 317

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L     P+V+ L  +L  +L HRREV+ RR+ F ++    
Sbjct: 318 LNNLYAQTQLQTVFGINMVALD-NGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 376

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP-------------------------------- 413
           R  IL+GL +A  NIDE+IA+I+    P                                
Sbjct: 377 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 436

Query: 414 -----KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                  +    + L+  Q  AIL+LRL  L  LE  +I+ E   ++ + E++ ++++  
Sbjct: 437 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 496

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  E+  VKE F        RRT   +          + +I +E   V +S+ G
Sbjct: 497 DKLHEVIREELIAVKEQFGDE-----RRTVIID---DHSDLTHEDLIPEEHRVVTLSHEG 548

Query: 529 W--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +         ++         A   KE D +K  L A++ D IL  ST GK Y L    +
Sbjct: 549 YIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQV 608

Query: 581 LS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
                   G  I  L+ L  ++ I        YD +  + + +++G    V  +E     
Sbjct: 609 PQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPR 668

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
            KGK  L ++  +++  V    G   + +V +  K + F   ++ EM R  +GVR    K
Sbjct: 669 TKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKLK 728

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  +     +G   + +    Y +           RGG G +  +   R+GK +S+
Sbjct: 729 AKQNVIALIVVKPKG-NILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSA 787



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 6/179 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  +    AL   EGD L           I+L++  GKA       +         ++  
Sbjct: 666 QPRTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRG- 724

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEK 649
           I L   Q+++   V      +L  +  G        +  +  R G+  + +     + + 
Sbjct: 725 IKLKAKQNVIALIVVKPKGNILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKV 784

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +        D V ++ +   L+   +++I +M R  +GVRL       +   +     E
Sbjct: 785 VSAAQVFDDDDVLLISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAE 843


>gi|167759583|ref|ZP_02431710.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704]
 gi|167662810|gb|EDS06940.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704]
          Length = 828

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/770 (31%), Positives = 402/770 (52%), Gaps = 37/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MEDN---IFDKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   +++D VDF   ++E + EPVV P++FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMELTADINKDTVDFAPNFDETEKEPVVLPARFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN+ EI  A + +ID+      E +IE++L+ I GPDFPTGG+I+     I 
Sbjct: 178 GMATNIPPHNLNEIINAVVKIIDDQIEDKEETTIEEILKIIKGPDFPTGGMIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   I+VTE+PY V K+RLIEKIAE++  K+I  + D
Sbjct: 237 EAYRTGRGKIRVRAVTDIETMPNGKSRIIVTELPYMVNKARLIEKIAEMVRDKKIDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D+S+ +   V+    + ++ ++L+  ++  + ++  F + M  L     P+VM +  +
Sbjct: 297 LSDQSSREGMRVVIELRKDVNANVLLNQLYKHTQLQDTFGVIMLALV-NNEPRVMNILDM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVM 417
           L  +L H+ EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR     +     +
Sbjct: 356 LNYYLQHQEEVVTRRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSQTVQIAKAEL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF L+E Q  AI+++RLR+L  LE  ++++E   L+ +  ++ ++L   K     I  
Sbjct: 416 MERFGLSEVQSQAIVDMRLRALTGLEREKLENEYQELMKQIRELKAILADRKLLLGVIKE 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           EI  +++ +        RRT+       +     + +I KE + + ++  G+I+ +    
Sbjct: 476 EILIIRDKYGDE-----RRTSI---GFDEFDISMEDLIPKEDVVITMTKLGYIKRMSHDT 527

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   + D ++     HT   I+  +  G+ Y +    +        G
Sbjct: 528 FKSQNRGGKGIKGMQTLKEDYVEELFMTHTHHYIMFFTNTGRVYRMKGYEIPEASRTSRG 587

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            AI  L+ L   + I        Y     L + + KG       +E     + G   + +
Sbjct: 588 TAIVNLLQLMPGEKISAVIPIEEYKDGEYLFMATKKGLVKKTPITEYAHVRKTGLAAITL 647

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             E+++  V     D  V +V +  + + F    +    R   GVR  +  D      + 
Sbjct: 648 REEDELIEVKYTDNDRDVLLVTKYGQCIRFDEKDVRPTGRTSMGVRGMNLADRDEVIGMQ 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +G   +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 708 L-DSQGCDLLIVSEKGMGKRTSIEEFTCQNRGGKGVKCYKITEKTGNVVG 756



 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 82/270 (30%), Gaps = 21/270 (7%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +     Y +       +   +  +    S   +   I   ++ +        +       
Sbjct: 554 MTHTHHYIMFFTNTGRVYRMKGYEIPEASRTSRGTAIVNLLQLM------PGEKISAVIP 607

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
             E    +   +       +   +                 L+A+  +E D L    +  
Sbjct: 608 IEEYKDGEYLFMATKKGLVKKTPITEYA-------HVRKTGLAAITLREEDELIEVKYTD 660

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               +LL++  G+       ++         ++ + +L    +++   +    C LL+VS
Sbjct: 661 NDRDVLLVTKYGQCIRFDEKDVRPTGRTSMGVRGM-NLADRDEVIGMQLDSQGCDLLIVS 719

Query: 619 SKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIF 673
            KG        E     R GK      +   +   +  V  V   D V ++     ++  
Sbjct: 720 EKGMGKRTSIEEFTCQNRGGKGVKCYKITEKTGN-VVGVKAVNHDDEVMIINTEGIIIRM 778

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             + I  + R   GV+L + ++G I   I 
Sbjct: 779 KCEGISVLGRVTSGVKLINLQEGDIVASIA 808


>gi|319902117|ref|YP_004161845.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108]
 gi|319417148|gb|ADV44259.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108]
          Length = 842

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/758 (30%), Positives = 395/758 (52%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD ++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLQKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A ++ IDN EI IE+L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACISYIDNNEIDIEELMSYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E G     IVVTEIPY V K+ LI+ IA+L   K+I  + +  DES  +   
Sbjct: 241 MRAKAEI-ETGSTHDKIVVTEIPYGVNKAELIKSIADLANEKKIEGIANANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVH-GRPRLLNLKDLIKYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +     RF LTE Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLIERFQLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ E+K+ +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAHLEEILVNDELCRKVIKDELIEIKDKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  +  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGSKGTETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  ++  +  G        +     + G   + +  ++++  V    G
Sbjct: 599 RVKNLNDQDFINSHYVVFCTKNGIVKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNG 658

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
           D  + +   N + + F    +  M R   GVR  +  + G   +  +IC K  +  T + 
Sbjct: 659 DNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPDTETIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +  +        RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLV 756


>gi|156888525|gb|ABU96667.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/756 (31%), Positives = 392/756 (51%), Gaps = 21/756 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +     VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRRDASANVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q 
Sbjct: 359 ITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                R      EV   +   L +             +    +   R+ K     +    
Sbjct: 479 P---RRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTG 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             + D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L   + I
Sbjct: 536 VNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETI 595

Query: 603 VTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            T                 + +G     E SE     + G   L +   +++  V+   G
Sbjct: 596 QTIINARKEETAGKSFFFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            D + +  ++   + F+   I  M R   GVR  S ++     V   +I +    +    
Sbjct: 656 QDDIIIGTQSGYSVRFNEASIRNMGRSATGVRGVSLREDDRV-VGASRINDHQEVLVITE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +           RGG G       P++G+   
Sbjct: 715 NGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 57/160 (35%), Gaps = 8/160 (5%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            +  D I++ +  G +      ++ +       ++  + L  +  +V A   +   ++LV
Sbjct: 653 TNGQDDIIIGTQSGYSVRFNEASIRNMGRSATGVRG-VSLREDDRVVGASRINDHQEVLV 711

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           ++  G     E +E     R GK      +   +  ++  +V V G + + V+     ++
Sbjct: 712 ITENGYGKRTEATEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVII 770

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
             ++  I +  R   GV++                 +   
Sbjct: 771 RTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEE 810


>gi|218778344|ref|YP_002429662.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01]
 gi|218759728|gb|ACL02194.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01]
          Length = 811

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/757 (32%), Positives = 397/757 (52%), Gaps = 30/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  +S+   +++ YL YA+S I  RA+PD+RDG KPVHRR++  M E+  D+   +KK
Sbjct: 5   ENMLEISIESEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFTMHELKNDYNKPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGD ++YD++VR+AQ F  RYPL+ GQGNFG+IDGD AAA RYTE 
Sbjct: 65  SARVVGDVMGKYHPHGDAAIYDTMVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  IL+ +D++ VDF   Y+E   EP V P++ PNLL NG++GIAVGMAT+IP H
Sbjct: 125 RMQKMAHAILEDLDKETVDFIPNYDETIQEPTVLPTRIPNLLVNGSAGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +A  ALI+NP++  E+LL+Y+ GPDFPTGG I+  R  I  +Y  GRG  ++RA
Sbjct: 185 NLGEITDALCALIENPKLMPEELLQYVPGPDFPTGG-IIYGRAGIHSAYSTGRGIIKIRA 243

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE +   G   +VVTE+PYQV K+R+IEKIA L+  K I  L  +RDES  +   + 
Sbjct: 244 RIMVEKDNRTGKETLVVTELPYQVNKARVIEKIAHLMKDKVIEGLAFVRDESDREGMRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +     +++  ++  + +E  F + +  +     P+++ L   L+ ++AHR+ V+ 
Sbjct: 304 MGLKKDEMASIIINKLYKHTQLENSFGIILLSIV-NNRPELLNLKETLQYFIAHRKVVVI 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ + +   + R  IL+G  IA  N+DE++ +IR    P   +  +++RF LT+ Q  A
Sbjct: 363 RRTKYELAKAEARAHILEGYKIAIDNLDEVVKLIRASSTPLEAREGLMARFDLTQIQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +++ E   L+    +   +L S +     +  E+ EV+  +    
Sbjct: 423 ILDMRLQKLTGLEIEKVEEEYRELIKAIARYKEILASDQLVLEIVRDELLEVRTEYVDE- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT   +          + MI +E + V IS+RG+I+          +        
Sbjct: 482 ----RRTEIVDDEGE---ITIEDMIVEEDMVVTISHRGYIKRNPLTLYHSQRRGGKGKIG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQ 600
           +   + D +     A T + +L  +  G+ Y      +       +      L++L  ++
Sbjct: 535 MGTGDEDFVSRLFVASTHNTLLFFTNLGRVYWRKVYEIPQAGRAAKGKFISNLLNLAPDE 594

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            + T      ++    +++ +  G     +          G   L +   +++       
Sbjct: 595 QLATVLDVKEFEPGYNIIMATKDGIIKKTDLLAYSNPRSNGIIALSLGEGDQLIAARISD 654

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G  +V +     K + F    +  M R  +GV+  +   G    V    +  G T     
Sbjct: 655 GTQNVFLGSAFGKSIRFHESDVRAMGRVSRGVKGMTLAAGDHL-VGMEVLTHGKTLFSCT 713

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + +  +     L KRGG G +  +   R+G  +S
Sbjct: 714 ENGFGKRTSLDEYPLQKRGGKGVITIRTHERNGAVVS 750



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 6/179 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +I     +      S  + AL   EGD L  A  +  T  + L S  GK+      ++ +
Sbjct: 619 IIKKTDLLAYSNPRSNGIIALSLGEGDQLIAARISDGTQNVFLGSAFGKSIRFHESDVRA 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   + L     +V   V      L   +  G        E     R GK  +
Sbjct: 679 MGRVSRGV-KGMTLAAGDHLVGMEVLTHGKTLFSCTENGFGKRTSLDEYPLQKRGGKGVI 737

Query: 643 KV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
            +     +   + ++V    D + ++ +  K++   +  I  +SR   GVRL   + G 
Sbjct: 738 TIRTHERNGAVVSILVVSNDDDLMLMTDAGKIIRMPMGDISVISRNTMGVRLMGMEPGE 796


>gi|297248114|ref|ZP_06931832.1| DNA topoisomerase IV, A subunit [Brucella abortus bv. 5 str. B3196]
 gi|297175283|gb|EFH34630.1| DNA topoisomerase IV, A subunit [Brucella abortus bv. 5 str. B3196]
          Length = 775

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 436

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 437 EPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 496

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 497 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 556

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 557 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 616

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 617 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 676

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 677 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 736

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 737 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775


>gi|17987483|ref|NP_540117.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|225627254|ref|ZP_03785291.1| DNA topoisomerase IV, A subunit [Brucella ceti str. Cudo]
 gi|17983180|gb|AAL52381.1| topoisomerase iv subunit a [Brucella melitensis bv. 1 str. 16M]
 gi|225617259|gb|EEH14304.1| DNA topoisomerase IV, A subunit [Brucella ceti str. Cudo]
          Length = 775

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 436

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 437 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 496

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 497 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 556

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 557 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 616

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 617 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 676

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 677 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 736

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 737 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775


>gi|312142415|ref|YP_003993861.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
 gi|311903066|gb|ADQ13507.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
          Length = 832

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/748 (32%), Positives = 385/748 (51%), Gaps = 14/748 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ + +   +   YL YA+S I  RA+PD+RDG KPVHRRI++A++++G+      KKS
Sbjct: 7   RVEKIDIDKEMRGSYLDYAMSVIVGRALPDVRDGLKPVHRRILYALNDLGMTPNKPHKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VYD++VR+AQ F  RYPLI G GNFG++DGDSAAA RYTEAR
Sbjct: 67  ARIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYPLIDGHGNFGSVDGDSAAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+ +   +L  ++++ VDF   ++E   EP V P++FPNLL NG++GIAVGM+TSIP HN
Sbjct: 127 MSSITTELLTDINKETVDFTPNFDESLEEPQVLPARFPNLLVNGSAGIAVGMSTSIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LI  PEI+ ++L+  I GPDFPTGG I   R SI ++Y+ GRG   VRA+
Sbjct: 187 LGEVIDGVVKLITKPEITTKELMTIIKGPDFPTGGQI-MGRGSIYKAYKTGRGKLTVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++      I+V E+P+QV K+RLI+KIA L+  ++I  + DIRDES  D   ++  
Sbjct: 246 TRIEDLKVNRKQIIVDELPFQVNKARLIKKIANLVKDEKIDAISDIRDESDRDGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P++++  ++  S ++  F   M  L     P+V+ L  IL+ +L H+++V+ RR
Sbjct: 306 LKREATPEVVLNQLYKHSRLQITFSTIMIALV-NNEPKVLSLKEILEHYLEHQKKVITRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAIL 432
           + + +     R  IL+G  IA  NIDEI+ +I+  +         +  + L+E Q +AIL
Sbjct: 365 TKYDLDKALDRAHILEGYKIALANIDEIVEMIKEAEDVDTARIALMDDYELSEIQANAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+SL  LE  +I +E D L A+  +  S+L    +  N +  EI E+K+ ++     
Sbjct: 425 RMRLQSLTGLERNKIDTEYDELQAKITRYRSILADEDKLLNIVKKEILEIKDKYNDKRRT 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                             Q  +       +        RS +     +  +  KE D ++
Sbjct: 485 KIMDKVTDLEIEDLIEEEQIVITMTHQGYIKRMALDLYRSQRRGGKGVIGISTKEEDFVE 544

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
                 T  + L  S  G+ Y L    +     +  G AI  L++L   + I        
Sbjct: 545 NIFTTTTHHKFLFFSNQGRVYRLKGYQIPEAGRQARGTAIINLLELKEEERITAVIPVKE 604

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           +     L++ +  G            N   G   + +   +++  V  +  D  + +V +
Sbjct: 605 FPEDAYLIMATKNGLIKKTSLDAYDTNY-TGLIGINLRENDELIGVRIIDEDENIILVSK 663

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           N K + F+   +  + R   GVR     +      +      G   +      Y +    
Sbjct: 664 NAKAIHFNESDVRSVGRNSYGVRGIRLSEEDYVIDMGIDSA-GEHLLVITENGYGKKTPL 722

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +  RGG G L      ++G+  ++
Sbjct: 723 TEYRIQNRGGKGILTANITEKNGQLAAA 750



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           I L+    ++   +  +   LLV++  G       +E     R GK  L  +      ++
Sbjct: 688 IRLSEEDYVIDMGIDSAGEHLLVITENGYGKKTPLTEYRIQNRGGKGILTANITEKNGQL 747

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
                V     + V+     ++    ++I    R   GV++ + ++     V   +I E 
Sbjct: 748 AAAKIVDANSEMMVITHEGIIIRVQAEEISTTGRNTIGVKIINVEEDDKV-VSLARINED 806

Query: 709 LTW 711
              
Sbjct: 807 EIV 809



 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 2/130 (1%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S  +  +   E D +         + +L+++ +G     P          G+ I    
Sbjct: 680 RNSYGVRGIRLSEEDYVIDMGIDSAGEHLLVITENGYGKKTPLTEYRIQNRGGKGILTAN 739

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
               N  +  A + D+  +++V++ +G    V+  EI    R   G   + V  ++K+  
Sbjct: 740 ITEKNGQLAAAKIVDANSEMMVITHEGIIIRVQAEEISTTGRNTIGVKIINVEEDDKVVS 799

Query: 653 VVKVTGDHVA 662
           + ++  D + 
Sbjct: 800 LARINEDEIV 809


>gi|85857849|ref|YP_460051.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB]
 gi|85720940|gb|ABC75883.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB]
          Length = 833

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/745 (34%), Positives = 402/745 (53%), Gaps = 17/745 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +++ Y+ YA+S I  RAIPD+RDG KPVHRR++ AMSEMG  +   +KKSARIV
Sbjct: 12  VNIEDEMKKSYMDYAMSVIIGRAIPDVRDGLKPVHRRVLFAMSEMGNRWNKPYKKSARIV 71

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G++IGK HPHGD + YD++VRLAQ F  RYPLI GQGNFG+ID D  AA RYTE RM ++
Sbjct: 72  GDIIGKYHPHGDAAAYDTIVRLAQDFSMRYPLIDGQGNFGSIDDDPPAAMRYTEVRMARI 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            E IL  +++D VDF   Y+E   EP + PS+ P LL NGT+GIAVG+AT+IP HNV E+
Sbjct: 132 TEEILADLEKDTVDFVPNYDESLMEPSILPSRIPTLLLNGTAGIAVGVATNIPPHNVTEV 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               +ALI NPE+++E+++++I GPDFPT G  +  RE I+ +YR GRG  R+RA+  +E
Sbjct: 192 LSGTIALIRNPEMTLEEIMQFIPGPDFPTAG-FINGREGIISAYRTGRGIIRLRAKVVIE 250

Query: 260 E-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           +        IVVTEIPYQV K+ LIEKI+EL+  K+I  + D+RDES  +   ++    R
Sbjct: 251 KNERNDRESIVVTEIPYQVNKAALIEKISELVKEKKITGISDLRDESDREGIRIVIDLKR 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + ++++  ++  + ME+ F + + +      P V  L  ILK ++  R+ V+ RR++F
Sbjct: 311 DENSNVILNQLYKHTQMESTFGI-IMLAIENGQPHVFNLIEILKSFIEFRKVVIVRRTTF 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLR 435
            +     R  IL+GL+IA  NIDE++A+I+    P+       SRFSLT+ Q  AIL++R
Sbjct: 370 EVNKARERAHILEGLIIALDNIDEVVAVIKASKSPQEAASALCSRFSLTDIQARAILDMR 429

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE+ +IK E D LL E E++  +L+  ++    I  E+ E+ + +         
Sbjct: 430 LQRLTGLEQSKIKEEFDALLKEIERLQGILDDPRKVLEVIISEMEEIIDRYGDERRTEIV 489

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
            ++         A  +  +   +   +  +     R+ +        +  KE D ++   
Sbjct: 490 ASSEDIDIEDMIAEEEMVVTYSQGGYIKRNPSSLYRTQRRGGRGKVGMMTKEEDVVERLF 549

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDS 610
            A T D +L+ +  G+ Y L    +        G+ I  LI++  ++ +        ++ 
Sbjct: 550 IASTHDYVLIFTNAGRLYWLKVYQIPQAGRMAKGKPIVNLINIGPDERVAAVLPVRSFEE 609

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
              +++ +  G     + +        G   L +   +++  V    GD  V +     K
Sbjct: 610 GQAVIMATRAGIVKKTDLTAYSNPRSGGIIALSIDEGDELVDVKLTGGDQDVFLATRKGK 669

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLL 727
            + F  D I  M R  +GVR  S        VI   I  EG   +  + +   +      
Sbjct: 670 AIRFKEDDIRTMGRTARGVRGISMDSDD--AVIGMDIPREGNAIVTVSEKGCGKRTAVSE 727

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
             L KRGG G +  +  P+ G  ++
Sbjct: 728 YRLQKRGGKGMINLRIVPKGG-LVA 751



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 71/188 (37%), Gaps = 7/188 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++            S  + AL   EGD L           + L +  GKA      ++ +
Sbjct: 621 IVKKTDLTAYSNPRSGGIIALSIDEGDELVDVKLTGGDQDVFLATRKGKAIRFKEDDIRT 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  ++  I ++ +  ++   +      ++ VS KG       SE     R GK  +
Sbjct: 681 MGRTARGVRG-ISMDSDDAVIGMDIPREGNAIVTVSEKGCGKRTAVSEYRLQKRGGKGMI 739

Query: 643 KVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGG 696
            +        +  +++VTG+  + ++  + K++   ++ +P + R  +GV+L     +  
Sbjct: 740 NLRIVPKGGLVADILQVTGEEDLLLMSNSGKIIRMKVEDVPLIHRVTQGVKLIELDAEEQ 799

Query: 697 ISDVICFK 704
           +  +   +
Sbjct: 800 LVGMTSAE 807


>gi|329767179|ref|ZP_08258706.1| DNA gyrase A subunit [Gemella haemolysans M341]
 gi|328836846|gb|EGF86493.1| DNA gyrase A subunit [Gemella haemolysans M341]
          Length = 815

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/761 (33%), Positives = 418/761 (54%), Gaps = 29/761 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              + N+   ++   +E  +L Y++S I  RA+PD+RDG KPVHRRI++A +++GL +  
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSA +VGEV+ K HPHGD + Y ++VRLAQ F  RYPL+ GQGNFG+IDGD AAA R
Sbjct: 62  PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +L+ +++D VD +D Y+    EP V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL DN EI+I +L+  I GPDFPTG  ++  R  IV++Y  GRG  
Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLL-GRSGIVKAYTTGRGSV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R +  +E++  G   IV+TEIPYQV K++L+EKIAEL   K+I  + D+RDES     
Sbjct: 241 IMRGKTEIEQMKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R ++ ++++ +++ L+ +++ F +NM  L    VP+++ L  +L  +L H++E
Sbjct: 301 RIVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALV-NGVPKLLNLKEVLYYYLEHQKE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL IA  NID II++IR     +      + +F LTE Q
Sbjct: 360 VVVRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQFGLTEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E   L+     ++ +L   ++    +  E+ EVKE F 
Sbjct: 420 AQAILDMRLQRLTGLERDKIEEEYSKLMELIADLEDILAKPERVIQIVKDELLEVKEKFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                 +RR+   E          + +IEKE I + +S+  +I+ L + +          
Sbjct: 480 D-----KRRSVIIEGQVD--QIENEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRGGRG 532

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           ++ +   + D++   L   T D IL  +  GK YTL    +       +   I  L+++ 
Sbjct: 533 VNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLEIE 592

Query: 598 HNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             + + +        +    L+  +  G     +  +  +  +KGK  LK+  ++ +  V
Sbjct: 593 KEEKVNSIIAISDLQEEGTSLIFSTKYGIIKKSKLGDYASILKKGKIALKLDEDDSLIDV 652

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            ++T D  + +V  N + +  + +++  M R  +GV+  +        V    + E    
Sbjct: 653 QRITDDQDIMIVTANGQAIRINAEKVRTMGRVSRGVKGITLSPDDYV-VGMEVVDESKKI 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        +        +  RGG G  V K   ++GK ++
Sbjct: 712 LTVTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVA 752



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
               AL   E DSL           I++++ +G+A  + A  + +       +   I L+
Sbjct: 636 KGKIALKLDEDDSLIDVQRITDDQDIMIVTANGQAIRINAEKVRTMGRVSRGV-KGITLS 694

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKV-SSEEKMKLVV 654
            +  +V   V D + K+L V+  G   I + +E     R GK     KV     K+  V 
Sbjct: 695 PDDYVVGMEVVDESKKILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVAVK 754

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            + G + + ++ +   ++   +  I  + R   GV++ +  D      +     E + 
Sbjct: 755 SIAGNEDLMIMTDQGIIIRIDVSTISTLGRTATGVKVINLVDDQKVATVTLAAKEEIY 812


>gi|306843699|ref|ZP_07476299.1| DNA topoisomerase IV, A subunit [Brucella sp. BO1]
 gi|306276009|gb|EFM57718.1| DNA topoisomerase IV, A subunit [Brucella sp. BO1]
          Length = 770

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/759 (60%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIERRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 492 WKKISAEIKAVREKFGPTTRLGKRRTTFAHAPMHDLEDIHQAMIEREPVTIVVSEKGWLR 551

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKTPDEAK 671

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 731

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|34556798|ref|NP_906613.1| DNA gyrase subunit A [Wolinella succinogenes DSM 1740]
 gi|34482513|emb|CAE09513.1| DNA GYRASE SUBUNIT A [Wolinella succinogenes]
          Length = 828

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/767 (34%), Positives = 425/767 (55%), Gaps = 32/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+  +   E++K V++  +++E YL Y++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MSDLLS-NNEDIKEVNIEDSVKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +   AA+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 60  VGARAAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMTQ +E IL+ ++++ VDF   Y++   EP V PS+ PNLL NG++GIAV
Sbjct: 120 AAAMRYTEARMTQASEEILRDIEKETVDFVSNYDDTLKEPDVLPSRIPNLLVNGSNGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ EA + LID+P+  +E L+ ++ GPDFPTGG I+  ++ I+E+YR 
Sbjct: 180 GMATNIPPHRLDEVVEALIHLIDHPQAELEDLMGFVEGPDFPTGG-IIYGKQGIIEAYRT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  RVRA+  + E  +    IV+ E+PYQ  K+RL+E+IAEL   K I  + ++RDES
Sbjct: 239 GRGRIRVRAKTHI-EKNKTKDVIVIDEVPYQTNKARLVEQIAELAKEKVIEGIAEVRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    +    ++++  +F  + MET F + + +    + P++  L  +L  +L
Sbjct: 298 DREGIRVVIELKKDAMSEIVLNHLFKSTAMETTFGI-ILLAIHNKEPKIFTLLELLNLFL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            HR+ V+ RR+ F ++    R  IL+GL IA  +IDEI+++IR     K      ++RF 
Sbjct: 357 NHRKTVVIRRTIFELEKAKARAHILEGLRIALDHIDEIVSLIRASSDAKEAKEGLMARFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I++E   LL E E++ ++L S ++    I  E+ E+
Sbjct: 417 LSEIQSQAILDMRLQRLTGLEREKIENEYQELLKEIERLTAILRSEEKLNEIIKQELIEI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +E FS      +R+TT  E   +      + +I  EP  V +S+RG+++           
Sbjct: 477 REKFST-----KRKTTIEEDYES---IDIEDLIPNEPTVVTMSHRGYVKRVPLRSYEKQN 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  + +  + D ++    ++T D IL ++  G+ Y L    +        G+A+  
Sbjct: 529 RGGKGKISGNTHDDDFIESFFVSNTHDTILFITDKGQLYWLKVYRIPEAGRTAIGKAVVN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI +  ++ I+       ++    L+  +  G       SE       G   + +   ++
Sbjct: 589 LIQIGADEKIMATITTQDFNEDKSLMFFTKNGIVKRSNLSEFKNIRSVGIRAINLDDNDE 648

Query: 650 MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI- 705
           +     +  +   + V       + F ++ I E+ R  +GV    +K+          I 
Sbjct: 649 LVTARIIDSNVKEIFVATYKGMCIRFPVEDIREIGRVARGVTGIRFKEDEDYVAGATTIG 708

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E    +  + +   +        L  RGG G +  K  P++G+ + 
Sbjct: 709 DEKEELLTVSEKGIGKRTEAEEYRLQSRGGKGVIAMKLTPKTGQLVG 755


>gi|270289887|ref|ZP_06196113.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4]
 gi|270281424|gb|EFA27256.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4]
          Length = 843

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/759 (30%), Positives = 381/759 (50%), Gaps = 19/759 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
              +   +  V+L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+   
Sbjct: 2   PEDMSGRITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPE 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++   +L+ ++++ VDF++ Y+  + EP V PS+FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKITLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+  A   L++N + +   L+E + GPDFPTGG IV  +  I ++Y  GRG 
Sbjct: 182 NIPPHNLSEVIAAIHILMNNEDATTADLMEALPGPDFPTGG-IVMGKSGIRKAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  +E    G   IV TE+PY V K++LIE+IAEL   KRI  + D+ DES  D 
Sbjct: 241 IILRAKVDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R +   +++ +++ ++ M+T F  NM  +     P+V+ L  IL+ +L H+ 
Sbjct: 301 LRVVIDVRRDVSASVVLNNLYKMTLMQTTFGFNMLAIV-NGAPKVLSLKQILQYYLQHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ F ++  + R  IL+GL IA  +IDEIIAIIR        K  +++ +SL+  
Sbjct: 360 EVVRRRTEFDLKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLMNNYSLSSK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++ E   ++A       +L   ++    I  E+ E++E F
Sbjct: 420 QAQAILDMRLVRLTGLEREKVEDEYRKVMAAIADYRDILAHTERIHEIIYNELLEIQEKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHF 545
                          +   D    +  M+       +        ++       +  +  
Sbjct: 480 GDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGYIKRMPTSEFKTQNRGGRGIQGMGV 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
            E D ++  +   T D +L  +  GK Y +    +       +   +  L+ ++  + I 
Sbjct: 540 HEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVINLLGIDSGESIQ 599

Query: 604 TAFVY--------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
                        +    L   + +G A     +E +     G   + +   +++  VV 
Sbjct: 600 AVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEFMNIRSNGLKAINLKDGDEVINVVI 659

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F   ++  M R   GVR    ++     V    +      + 
Sbjct: 660 TDGHQNIIIGTHNGYAISFKEGEVRSMGRSATGVRGIRLRENDYV-VGSAVLAPESKVMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 719 ITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKNGPLAG 757



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 6/177 (3%)

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   S  L A++ K+GD +   +       I++ + +G A +   G + S       ++ 
Sbjct: 636 MNIRSNGLKAINLKDGDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSMGRSATGVRG 695

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEE 648
            I L  N  +V + V     K++V++ KG        E     R GK      +   +  
Sbjct: 696 -IRLRENDYVVGSAVLAPESKVMVITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKNGP 754

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              LV     + V ++ +   ++ F++D +    R   GV +    +      +   
Sbjct: 755 LAGLVTVEGNEDVMLITDRGVMIRFNVDNVSTTGRSTLGVHVIKTDENSKVATMAIV 811


>gi|258507001|ref|YP_003169752.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
 gi|257146928|emb|CAR85901.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
 gi|259648371|dbj|BAI40533.1| DNA gyrase A subunit [Lactobacillus rhamnosus GG]
          Length = 870

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/762 (30%), Positives = 393/762 (51%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E   A   L+D+P+ +   L++ + GPDFPTGG +V  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGG-VVMGKSGIRHAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D 
Sbjct: 241 IVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++ L+ ++T F  NM  +     P+V+ L  IL+ +L H+ 
Sbjct: 301 MRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIV-NGAPKVLSLKQILQYYLDHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII IIR+ +       +++ +F+L++ 
Sbjct: 360 NVIRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F
Sbjct: 420 QSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                  +RRT          +   + +IE+E + + +S+ G+++               
Sbjct: 480 GD-----KRRTELL--VGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D ++  +   T D +L  +  GK Y      +       +   I  L+ +
Sbjct: 533 GIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLLGV 592

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              + I T        +    L  V+  G        E       G   L +  ++++  
Sbjct: 593 GAGEKIQTVINVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNN 652

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+  +G D++ +       + F    +  M R   GVR    +D     V    +     
Sbjct: 653 VILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYV-VGSDILKPDSE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + Y +        +  RGG G        ++G    
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKNGPLAG 753



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  L AL+ K+ D L   +     D IL+ +  G +      ++ S       ++  
Sbjct: 633 NIRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRG- 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L  +  +V + +     ++ V+S KG        E     R GK      +   +   
Sbjct: 692 IRLRDHDYVVGSDILKPDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKNGP- 750

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +  V  V G + + V+ ++  ++ F+I  + +  R   GVRL    D      + 
Sbjct: 751 LAGVTTVDGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMA 805


>gi|304385860|ref|ZP_07368204.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus
           acidilactici DSM 20284]
 gi|304328364|gb|EFL95586.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus
           acidilactici DSM 20284]
          Length = 843

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/759 (30%), Positives = 381/759 (50%), Gaps = 19/759 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
              +   +  V+L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+   
Sbjct: 2   PEDMSGRITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPE 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++   +L+ ++++ VDF++ Y+  + EP V PS+FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKITLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+  A   L++N + +   L+E + GPDFPTGG IV  +  I ++Y  GRG 
Sbjct: 182 NIPPHNLSEVIAAIHILMNNEDATTADLMEALPGPDFPTGG-IVMGKSGIRKAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  +E    G   IV TE+PY V K++LIE+IAEL   KRI  + D+ DES  D 
Sbjct: 241 IILRAKVDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R +   +++ +++ ++ M+T F  NM  +     P+V+ L  IL+ +L H+ 
Sbjct: 301 LRVVIDVRRDVSASVVLNNLYKMTLMQTTFGFNMLAIV-NGAPKVLSLKQILQYYLQHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ F ++  + R  IL+GL IA  +IDEIIAIIR        K  +++ +SL+  
Sbjct: 360 EVVRRRTEFDLKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLMNNYSLSSK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++ E   ++A       +L   ++    I  E+ E++E F
Sbjct: 420 QAQAILDMRLVRLTGLEREKVEDEYRKVMAAIADYRDILAHTERIHEIIYNELLEIQEKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHF 545
                          +   D    +  M+       +        ++       +  +  
Sbjct: 480 GDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGYIKRMPTSEFKTQNRGGRGIQGMGV 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
            E D ++  +   T D +L  +  GK Y +    +       +   +  L+ ++  + I 
Sbjct: 540 HEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVINLLGIDSGESIQ 599

Query: 604 TAFVY--------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
                        +    L   + +G A     +E +     G   + +   +++  VV 
Sbjct: 600 AVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEFMNIRSNGLKAINLKDGDEVINVVI 659

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F   ++  M R   GVR    ++     V    +      + 
Sbjct: 660 TDGHQNIIIGTHNGYAISFKEGEVRSMGRSATGVRGIRLRENDYV-VGSAVLAPESKVMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 719 ITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKNGPLAG 757



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 6/177 (3%)

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   S  L A++ K+GD +   +       I++ + +G A +   G + S       ++ 
Sbjct: 636 MNIRSNGLKAINLKDGDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSMGRSATGVRG 695

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEE 648
            I L  N  +V + V     K++V++ KG        E     R GK      +   +  
Sbjct: 696 -IRLRENDYVVGSAVLAPESKVMVITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKNGP 754

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              LV     + V ++ +   ++ F++D +    R   GV +    +      +   
Sbjct: 755 LAGLVTVEGNEDVMLITDRGVMIRFNVDNVSTTGRSTLGVHVIKTDENSKVATMAIV 811


>gi|312867801|ref|ZP_07728007.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405]
 gi|311096864|gb|EFQ55102.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405]
          Length = 818

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 399/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFADNYDASEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H+ EV
Sbjct: 300 FVIEVRRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILGAYIEHQTEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN           +++F L+E Q 
Sbjct: 359 VTRRTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSRTDAEAQAELMAKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+A    +  +L+  ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLVALIADLADILSKPERVATIIKEELEEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 A-----RRTEL--MIGEVLSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   + KG       +E     + G   L +  E+++  V 
Sbjct: 592 GESIQTIINVEQDRSDEAYLFFTTRKGLVKRTNVAEFSNIRQNGLKALNLRDEDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G+  V +  +    + F+   +  M R   GVR  + ++G         + +    +
Sbjct: 652 LTDGNTDVIIGTKYGYSVRFNEAVVRNMGRSATGVRGVNLREGDKVVGASV-VTDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           R G G        ++G    
Sbjct: 711 IITEKGYGKRTMAGEYPTKGRAGKGIKTANITEKNGPLAG 750



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 71/228 (31%), Gaps = 13/228 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          +     E      + +G ++              L AL+ ++ D L 
Sbjct: 589 LDEGESIQTIINVEQDRSDEAYLFFTTRKGLVKRTNVAEFSNIRQNGLKALNLRDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + +       ++  ++L     +V A V     
Sbjct: 649 NVFLTDGNTDVIIGTKYGYSVRFNEAVVRNMGRSATGVRG-VNLREGDKVVGASVVTDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++L+++ KG        E     R GK      +   +     L+     + + ++ +  
Sbjct: 708 EVLIITEKGYGKRTMAGEYPTKGRAGKGIKTANITEKNGPLAGLLTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDS 714
            ++  S+  I +  R  +GV++     D  I      +  +    +  
Sbjct: 768 VMIRTSVGNISQTGRSTQGVKVMRLDQDAKIVTFTTVQPDDKDEEVVE 815


>gi|331086962|ref|ZP_08336038.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409623|gb|EGG89062.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 835

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/770 (30%), Positives = 398/770 (51%), Gaps = 37/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MEDN---IFDKVHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   +++D VDF   ++E + EP V P++FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E+  A + +ID+      E SIE +L+ + GPDFPTG +I+     I 
Sbjct: 178 GMATNIPPHNLREVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D
Sbjct: 237 EAYRTGRGKIRVRAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D+S  +   +     R ++ ++++  ++  + ++  F + M  L     P+VM +  +
Sbjct: 297 LSDQSNREGMRICIELRRDVNANVVLNQLYKHTQLQDTFGVIMLALV-NNEPKVMNILEM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVM 417
           L  +L H+ EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIRN    +     +
Sbjct: 356 LNYYLRHQEEVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKEGL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  F LT+ Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K     I  
Sbjct: 416 IEAFQLTDVQAQAIVDMRLRALTGLEREKLENEYKELMERIGELRAILADRKLLLGVIKE 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           EI  +   +        RRT+       +     + +I ++ + + ++  G+I+ +    
Sbjct: 476 EILVISGKYGD-----DRRTSI---GFDELDLSTEDLIPEQDVVITMTKLGYIKRMTTDT 527

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   E D ++      T + I+  +  G+ Y +    +        G
Sbjct: 528 FKSQNRGGKGIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRVYRMKGYEIPEAGRTARG 587

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            AI  L+ L  ++ I        Y+    L + + KG       ++     + G   + +
Sbjct: 588 TAIINLLQLMPDEKITAMIPIREYEDGKYLFMATKKGLVKKTPITDYANVRKTGLAAITL 647

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             ++++  V     +  + +V +  + + F    +    R   GVR  +  D      + 
Sbjct: 648 REDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVRSTGRTSMGVRGMNLSDRDEVIGMQ 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +G   + ++ +   +           RGG G    K   ++G  + 
Sbjct: 708 L-HTQGDYLLIASEKGMGKRTAIEEFTCQNRGGKGVKCYKITEKTGNVIG 756



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/270 (11%), Positives = 75/270 (27%), Gaps = 21/270 (7%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +     Y +       +   +  +        +   I   ++ +        +       
Sbjct: 554 MTSTHNYIMFFTNTGRVYRMKGYEIPEAGRTARGTAIINLLQLM------PDEKITAMIP 607

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
             E        +       +   +                 L+A+  +E D L       
Sbjct: 608 IREYEDGKYLFMATKKGLVKKTPITDYANVRKT-------GLAAITLREDDELIEVKITD 660

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               I++++  G+       ++ S       ++ + +L+   +++   ++     LL+ S
Sbjct: 661 NEKDIIMVTKYGQCIRFKEQDVRSTGRTSMGVRGM-NLSDRDEVIGMQLHTQGDYLLIAS 719

Query: 619 SKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIF 673
            KG        E     R GK      +   +   +  V  V  D  + ++     ++  
Sbjct: 720 EKGMGKRTAIEEFTCQNRGGKGVKCYKITEKTGN-VIGVKAVNEDNEIMIINTEGIVIRM 778

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               I  + R   GV+L +         I 
Sbjct: 779 ECAGISILGRVASGVKLINLDSNTKVASIA 808


>gi|319779311|ref|YP_004130224.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9]
 gi|317109335|gb|ADU92081.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9]
          Length = 895

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/793 (29%), Positives = 381/793 (48%), Gaps = 63/793 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL+Y++S I  RA+PD+RDG KPVHRR+++AM E+   +   +KKSARI
Sbjct: 10  PVSLEEEMRRSYLSYSMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSWNKPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGD AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDGAAAMRYTEIRLEK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++  +L  ++++ VDF   Y+  + EP + P+K P LL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 ISHEMLADLEKETVDFAPNYDGSEFEPKILPTKIPGLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NP+ SI++L+EYI  PDFPTGG I+     + E YR GRG   +RA+  +
Sbjct: 190 VIDGCLFCLKNPDCSIDELIEYIPAPDFPTGG-IIYGYSGVREGYRTGRGRVIMRAKTHI 248

Query: 259 EE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E+        I++ EIPYQV K  L EKIA+L+  KRI  + DIRDES +D   ++    
Sbjct: 249 EDFEKGNRQAIIIDEIPYQVNKKTLQEKIADLVNEKRIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    D+++ ++F L+ ++  F +N+  L     P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVADVVLNNLFKLTQLQDTFGMNLVALV-NGQPKLLNLKELVVYFLQHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------------- 415
           F ++        L+GL +A  NIDE I II+    P                        
Sbjct: 368 FELRKAREEGHKLEGLAVALANIDEFIQIIKTSASPDEALERLMSRGWDSSLVKSLLSRV 427

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+ +Q   ILN+ LR L  LE+ +I S  +
Sbjct: 428 DEDKALGGFKAYRPEGLPEEYGLRNDGLYYLSYDQTREILNMNLRRLTGLEQEKIISSYE 487

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF----CEVSRADKA 508
             +     +  +L+  ++    I  E+  +K  +   T    RR+       E    D  
Sbjct: 488 AAMDAITDLLDILSKPERITAIIGEELIAIKNEY---TIKDARRSQIEYNAVEFETEDLI 544

Query: 509 TLQQAMIEKEPITVVISNR-GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           T    ++       + S      ++         A   K+ D ++    A+T D +L  S
Sbjct: 545 TPMDMVVTLSNEGYIKSQPLSEYQAQNRGGKGKKATEMKDNDFVQQLFIANTHDYVLCFS 604

Query: 568 TDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ + L    +  G  + +   I  L +L  N+ I        +     + + ++KG 
Sbjct: 605 SLGRLHRLKVWEVPQGGRNSKGRPIVNLFELQENEKITVVLPIKQFSDDQFIFLATAKGV 664

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
                 S+  +  +     + +  ++ +       G+  + +     K + F    +   
Sbjct: 665 VKKTALSQYSSTRKMAVIAVTLDEDDYLVGAELTDGNSDIMLFSNAGKAVRFDESSVRAT 724

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R  +GV     ++G     +     E    + +    Y +    +      RG  G + 
Sbjct: 725 GRSSRGVLGMRLEEGQSIISLIVSKNENAYVLTATENGYGKRTPVVEYTRHGRGTKGMIA 784

Query: 741 PKGFPRSGKFLSS 753
            +   R+GK +++
Sbjct: 785 IQTSERNGKVVAA 797



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 47/144 (32%), Gaps = 5/144 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 I+L S  GKA      ++ +       +  +        I      +    +L 
Sbjct: 698 TDGNSDIMLFSNAGKAVRFDESSVRATGRSSRGVLGMRLEEGQSIISLIVSKNENAYVLT 757

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLI 672
            +  G        E   + R  K  + +     + + +  V+    D + ++  +  ++ 
Sbjct: 758 ATENGYGKRTPVVEYTRHGRGTKGMIAIQTSERNGKVVAAVLVDESDEIMLITTDGIVVR 817

Query: 673 FSIDQIPEMSRG-KGVRLQSYKDG 695
             +  I E+ R  +GV+L    + 
Sbjct: 818 TKVAPIRELGRATQGVKLIRIDND 841



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           +    +L  + +G     P           + +  +     N  +V A + D + +++++
Sbjct: 750 NENAYVLTATENGYGKRTPVVEYTRHGRGTKGMIAIQTSERNGKVVAAVLVDESDEIMLI 809

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVK 655
           ++ G     + + I    R   G   +++ ++ K+K V +
Sbjct: 810 TTDGIVVRTKVAPIRELGRATQGVKLIRIDNDTKLKGVQR 849


>gi|219849213|ref|YP_002463646.1| DNA gyrase subunit A [Chloroflexus aggregans DSM 9485]
 gi|219543472|gb|ACL25210.1| DNA gyrase, A subunit [Chloroflexus aggregans DSM 9485]
          Length = 824

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/755 (33%), Positives = 403/755 (53%), Gaps = 27/755 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ VS+   +   YL+YA+S I  RA+PD RDG KPV RRI++ M +MG      +KKSA
Sbjct: 6   VRPVSITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK+HPHGD +VYD+L R+AQP+  RYPLI GQGNFG+IDGD  AA RYTEAR+
Sbjct: 66  RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +AE +L  +D+D VDFRD ++    EPVV P+  PNLL NG SGIAVGMAT+IP HN+
Sbjct: 126 APIAEELLSEIDKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A   LID+PE ++E+L+E I GPDFPT G ++   E I+ +Y  GRG   +RA+ 
Sbjct: 186 GELCDAISYLIDHPEATVEELMEIIPGPDFPTAG-LILGTEGILAAYSTGRGQITLRAKT 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE GRG++ IVVTE+PYQV K+RL E+IAEL+  ++I  + D+RDES  +   ++   
Sbjct: 245 HIEEAGRGAYMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRNGMRLVILL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   P  ++ +++  + M+T F +NM  L   GR P+V+ L  +L+E++ HR+EV+ RR
Sbjct: 305 KQDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYINHRQEVIRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F +     R  IL+GL IA  N+D +I  IR+       +  ++  FSLTE Q  AIL
Sbjct: 365 TEFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMRNFSLTERQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+LR L  LE  +I+ E   ++    +++ +L + ++  + I  ++  +KE +      
Sbjct: 425 ELQLRRLAALERQKIEEEYREVIKLIAELEDILANPRKVLHLIKEDLSRLKEKYGDP--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT              + +I    + + +++RG+I+          +     +  + 
Sbjct: 482 --RRTRIIPDVTG--EVSDEDLIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGRGIKGML 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
            +E D ++  L  ++ D +L  +  GK Y + A  +       +   +  L+ L   + +
Sbjct: 538 TREQDIVRHLLTCNSLDNLLFFTDRGKVYQIKAHEVPDSSRTAKGLPLVNLVSLEPGEQV 597

Query: 603 VTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
            +           L++ + +G     +  E       G   + +   + +  V    G +
Sbjct: 598 TSMLAVREFDAEYLVMATVRGKIKRTQLREYSQVRSNGLIAIGLEEGDVLGWVRVSHGHE 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +     + L F   ++  M R   GV   +  +G     +     EG   +    R 
Sbjct: 658 DILLTTARGQTLRFEQSEVRPMGRPATGVIGINLAEGDRVVSMDLA-EEGADLLVVTARG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +        L  R   G +  K    + +  ++
Sbjct: 717 IGKRTALSEYPLKGRATGGVITIKLRNETDEVAAA 751


>gi|317477005|ref|ZP_07936247.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA]
 gi|316906798|gb|EFV28510.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA]
          Length = 842

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/758 (30%), Positives = 394/758 (51%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEALMTYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E       I+VTEIPY V K+ LI+ IA+L   KRI  + +  DES  +   
Sbjct: 241 MRAKAEI-ETTSTHDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVH-GRPRLLNLKELIKYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF LTE Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ E+K+ +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIKDKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  +  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGSKGTETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  +  G        +     + G   + +  ++++  V    G
Sbjct: 599 RVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F  + +  M R   GVR  +  + G   +  +IC K  E  T + 
Sbjct: 659 NNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPEAETIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +  +        RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLV 756


>gi|218131112|ref|ZP_03459916.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697]
 gi|217986632|gb|EEC52966.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697]
          Length = 842

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/758 (30%), Positives = 394/758 (51%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIESLMTYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E       I+VTEIPY V K+ LI+ IA+L   KRI  + +  DES  +   
Sbjct: 241 MRAKAEI-ETTSTHDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVH-GRPRLLNLKELIKYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF LTE Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ E+K+ +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIKDKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  +  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGSKGTETRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  +  G        +     + G   + +  ++++  V    G
Sbjct: 599 RVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F  + +  M R   GVR  +  + G   +  +IC K  E  T + 
Sbjct: 659 NNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPEAETIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +  +        RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLV 756


>gi|104773263|ref|YP_618243.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103422344|emb|CAI96852.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 823

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/765 (30%), Positives = 396/765 (51%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGG I+  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGG-ILMGRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+T F +NM  +     P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQTNFAMNMVAIVD-GAPKFLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN +        ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------K 534
           ++ F       +RRT     +        + +IE++   + +S++G+++ +         
Sbjct: 479 QKRFGD-----KRRTQIT--ASEVVTIEDEDLIEEQDALLTLSHQGYVKRMLIDDFKTQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +  ++GD ++  L++ T D +   +  GK Y   A  +       +   I  
Sbjct: 532 RGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L+  + I T               ++  G     +  E       G   L +   ++
Sbjct: 592 LLQLDKGEHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDE 651

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       + F+ D +  M R   GVR  + ++G           E
Sbjct: 652 LSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMGRSAAGVRGINLREGDYVVGSGILKPE 711

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G    K   ++G    
Sbjct: 712 DE-VLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAG 755



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 6/192 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  K+GD L   L       IL+ +  G A T    ++ +
Sbjct: 624 TVKRTKIREFENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRA 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 A    I+L     +V + +     ++L +S KG       SE     R GK   
Sbjct: 684 MGRSA-AGVRGINLREGDYVVGSGILKPEDEVLTISEKGYGKRTAASEYPVKGRGGKGIQ 742

Query: 643 KVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
                EK   +  V  V G   + ++  +  ++ F    + +  R   GVRL    DG  
Sbjct: 743 TAKIGEKNGPLAGVAVVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNA 802

Query: 698 SDVICFKICEGL 709
              +     E  
Sbjct: 803 VASMAVVPAEAE 814


>gi|121610061|ref|YP_997868.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2]
 gi|121554701|gb|ABM58850.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2]
          Length = 914

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/808 (29%), Positives = 393/808 (48%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ +M E+  D+  
Sbjct: 31  TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHELHNDWNR 90

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++KSAR VG+V+GK HPHGD ++YD++VR+AQ F  R+ LI GQGNFG++DGD+AAA R
Sbjct: 91  PYRKSARAVGDVMGKYHPHGDTAIYDTIVRMAQSFSLRHMLIDGQGNFGSVDGDNAAAMR 150

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+
Sbjct: 151 YTEIRLAKIAHEMLADIDKETVDFGPNYDGNEKEPLVLPSKLPNLLVNGSAGIAVGMATN 210

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+ +P+ SI++L+E I  PDFPT G I+     + + YR GRG  
Sbjct: 211 IPPHNLNEVVDACLHLLHHPDASIDELMEIIPAPDFPTAG-IIYGINGVKDGYRTGRGKV 269

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K++  +  I+DES +  
Sbjct: 270 VMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLDGISHIQDESDKSG 329

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L     P++  L  ++  +L HRR
Sbjct: 330 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALID-GQPRLCNLKDLVSVFLQHRR 388

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------- 414
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAIIRN   P                
Sbjct: 389 EVVTRRTVFELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAGLMAQSWDSQL 448

Query: 415 ------------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                              R+ L++ Q   IL +RL+ L  LE+
Sbjct: 449 VREMLTRTRADGAQVNADDYRPEGLDQELGMGRDGRYRLSDTQAQEILQMRLQRLTGLEQ 508

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  + +   + +  +L   ++    I  E+  +++ F +     RR     E   
Sbjct: 509 DKIVAEYKDAMDVVDDLLDILAKPERVSIIIGQELAAIRQEFGQHKLSARRS--IIEH-- 564

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+         R+ K       A   KE D +     
Sbjct: 565 SAQDLCTEDLITPTDMVVTLSHTGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFI 624

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 625 ANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGAMRS 684

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G     +   + +       G H V +  +
Sbjct: 685 FPADRYVFMATSMGTVKKTALDEFSNPRKGGIIAGHLDDGDYLIGAALTDGQHDVMLFSD 744

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  +SR  +GVR    ++G     +     E  + + +    Y +    
Sbjct: 745 GGKAVRFDENDVRPLSRQARGVRGMLLEEGQSVIAMLVAEDETQSVLTATENGYGKRTGI 804

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      RG  G +  +   R+GK +++
Sbjct: 805 VEYTRHGRGTKGMIAIQQSGRNGKVVAA 832



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 77/262 (29%), Gaps = 14/262 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G +   
Sbjct: 624 IANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMF---------PLQDGEKINV 674

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++ A ++      +        +               + A H  +GD L  A    
Sbjct: 675 VLPLTGAMRSFPADRYVFMATSMGTVKKTALDEFSNPRKGGIIAGHLDDGDYLIGAALTD 734

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               ++L S  GKA      ++         ++ ++       I      D T  +L  +
Sbjct: 735 GQHDVMLFSDGGKAVRFDENDVRPLSRQARGVRGMLLEEGQSVIAMLVAEDETQSVLTAT 794

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
             G        E   + R  K  + +     + + +   +    D + ++ +   L+   
Sbjct: 795 ENGYGKRTGIVEYTRHGRGTKGMIAIQQSGRNGKVVAATLVHADDEIMLITDKGVLVRTR 854

Query: 675 IDQIPEMSRG-KGVRLQSYKDG 695
           + +I E+ R  +GV L +  +G
Sbjct: 855 VSEIRELGRATQGVTLIALDEG 876



 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 2/104 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
            T  +L  + +G                 + +  +     N  +V A +  +  ++++++
Sbjct: 786 ETQSVLTATENGYGKRTGIVEYTRHGRGTKGMIAIQQSGRNGKVVAATLVHADDEIMLIT 845

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
            KG       SEI    R   G T + +    K+  + ++  + 
Sbjct: 846 DKGVLVRTRVSEIRELGRATQGVTLIALDEGAKLSGLQRIVEND 889


>gi|225575719|ref|ZP_03784329.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037062|gb|EEG47308.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM
           10507]
          Length = 834

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/770 (31%), Positives = 397/770 (51%), Gaps = 37/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RR++++M E+ 
Sbjct: 1   MEDN---IFDKVHDVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +L  ++++ VDF   ++E + EPVV PS++PNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMEMLADINKNTVDFVPNFDETEREPVVLPSRYPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E+ +  + +IDN      + S+E++L+ I GPDFPTG  I+     I 
Sbjct: 178 GMATNIPPHNLKEVIDGVVKIIDNIIEEDRDTSLEEILQVIKGPDFPTGATIL-GTHGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K++  + D
Sbjct: 237 EAYRTGRGKIRVRAVTDIESLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKVEGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D S  +   +     +  + ++++  ++  + ++  F + M  L     P++M L  +
Sbjct: 297 LNDHSNREGMRICIDLKKDANANVVLNQLYKHTQLQDTFGVIMLALI-NNQPKIMNLLEM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVM 417
           LK +LAH+ EV+ RR+ + +     R  IL+GLL A  NIDE+I IIR    P+     +
Sbjct: 356 LKHYLAHQEEVVTRRTQYELNKAQERAHILEGLLKALDNIDEVIRIIRGARTPQTAKEQL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF LTE Q  AI+++RLR+L  LE  ++++E   L+ +  K  ++L         +  
Sbjct: 416 MERFGLTEVQAQAIIDMRLRALTGLEREKLEAEYAELMEKIRKYKAILADRNLLLRVVRE 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           EI  + E +        RRT        +     + +I K+   + ++  G+I+ +    
Sbjct: 476 EILLISEKYGD-----DRRTQI---GFDEFDISMEDLIPKQNTVITMTKLGYIKRMTVDN 527

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   E D ++  L   T   ++  +  GK Y L A  +        G
Sbjct: 528 FRSQNRGGKGIKGMQTIENDYIEELLMTTTHHYLMFFTNTGKVYRLKAYEIPEAGRTARG 587

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            AI  L+ L   + I        ++    L++V+ KG        +     + G   + +
Sbjct: 588 TAIINLLQLAPGEKITAVIPLNKFEEGKYLMMVTKKGLVKRTPILDYEHVRKTGLAAIVL 647

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             E+++  V       H+ +V +    + F  + +    R   GVR  +  D      + 
Sbjct: 648 RDEDELIEVKYTDNKKHIILVTKEGMCIRFKENDVRSTGRVSMGVRGMNLSDSDEVVGMQ 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +G   +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 708 L-DTQGDCLLFVSEKGMGKRTSISEFTCQNRGGKGVKCYKITEKTGNVIG 756



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 11/169 (6%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           +      I+L++ +G        ++ S       ++ + +L+ + ++V   +      LL
Sbjct: 658 YTDNKKHIILVTKEGMCIRFKENDVRSTGRVSMGVRGM-NLSDSDEVVGMQLDTQGDCLL 716

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKL 670
            VS KG       SE     R GK      +   +   +  V  V  +  V ++     +
Sbjct: 717 FVSEKGMGKRTSISEFTCQNRGGKGVKCYKITEKTGN-VIGVKAVNEENEVMMITTEGII 775

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC---FKICEGLTWIDSA 715
           +      I  + R   GV+L +  +G     +     K+ E    + S 
Sbjct: 776 IRLQCSDISMLGRITSGVKLINLDEGVKVASVAKVREKVEESAQVLTSN 824


>gi|199598228|ref|ZP_03211649.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001]
 gi|199590831|gb|EDY98916.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001]
          Length = 870

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/762 (30%), Positives = 393/762 (51%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E   A   L+D+P+ +   L++ + GPDFPTGG +V  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGG-VVMGKSGIRHAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D 
Sbjct: 241 IVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++ L+ ++T F  NM  +     P+V+ L  IL+ +L H+ 
Sbjct: 301 MRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIV-NGAPKVLSLKQILQYYLDHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII IIR+ +       +++ +F+L++ 
Sbjct: 360 NVIRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F
Sbjct: 420 QSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                  +RRT          +   + +IE+E + + +S+ G+++               
Sbjct: 480 GD-----KRRTELL--VGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D ++  +   T D +L  +  GK Y      +       +   I  L+ +
Sbjct: 533 GIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLLGV 592

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              + I T        +    L  V+  G        E       G   L +  ++++  
Sbjct: 593 GAGEKIQTVINVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNN 652

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+  +G D++ +       + F    +  M R   GVR    +D     V    +     
Sbjct: 653 VILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYV-VGSDILKPDSE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + Y +        +  RGG G        ++G    
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKNGPLAG 753



 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  L AL+ K+ D L   +     D IL+ +  G +      ++ S       ++  
Sbjct: 633 NIRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRG- 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L  +  +V + +     ++ V+S KG        E     R GK      +   +   
Sbjct: 692 IRLRDHDYVVGSDILKPDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKNGP- 750

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +  V  V G + + V+ ++  ++ F+I  + +  R   GVRL    D      + 
Sbjct: 751 LAGVTTVDGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMA 805


>gi|116513234|ref|YP_812140.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|116092549|gb|ABJ57702.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
          Length = 823

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/765 (29%), Positives = 397/765 (51%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGG I+  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGG-ILMGRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M++ F +NM  +     P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVD-GAPKFLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN +        ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------K 534
           ++ F       +RRT     +        + +IE++ + + +S++G+++ +         
Sbjct: 479 QKRFGD-----KRRTQIT--ASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +  ++GD ++  L++ T D +   +  GK Y   A  +       +   I  
Sbjct: 532 RGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L+  + I T               ++  G     +  E       G   L +   ++
Sbjct: 592 LLQLDKGEHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDE 651

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       + F+ D +  M R   GVR  + ++G           E
Sbjct: 652 LSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMGRSAAGVRGINLREGDYVVGSGILKPE 711

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G    K   ++G    
Sbjct: 712 DE-VLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAG 755



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 6/192 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  K+GD L   L       IL+ +  G A T    ++ +
Sbjct: 624 TVKRTKIREFENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRA 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 A    I+L     +V + +     ++L +S KG       SE     R GK   
Sbjct: 684 MGRSA-AGVRGINLREGDYVVGSGILKPEDEVLTISEKGYGKRTAASEYPVKGRGGKGIQ 742

Query: 643 KVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
                EK   +  V  V G   + ++  +  ++ F    + +  R   GVRL    DG  
Sbjct: 743 TAKIGEKNGPLAGVAVVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNA 802

Query: 698 SDVICFKICEGL 709
              +     E  
Sbjct: 803 VASMAVVPAEAE 814


>gi|255283819|ref|ZP_05348374.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
 gi|255265702|gb|EET58907.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
          Length = 818

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/766 (31%), Positives = 403/766 (52%), Gaps = 37/766 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHEVDLKKTMEQSYIEYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQP+  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQPWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF+  ++E + EPVV PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFKPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      E  IE++L+ I GPDFPTG  I+     I E+YR GRG 
Sbjct: 187 NLREVIAAVVKIIDNRIEEDRETKIEEILKIIKGPDFPTGAQIL-GTRGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIA+L+  K+I  +  + DES+ + 
Sbjct: 246 IRVRAVTNIETMPNGKSHIIVTELPYLVNKARLIEKIADLVKEKKIDGITALTDESSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQVMPLDGILKEWL 365
             +     R ++ ++++  ++  + ++  F + M  +         P+V+ L  +L  +L
Sbjct: 306 MRINIELRRDVNANVILNQLYKHTQLQDTFGVIMLAVVSRGNDILQPKVLNLLEMLDYYL 365

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H+ +V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR     +     +++RF 
Sbjct: 366 KHQEDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIHIIRGSRSTQIAKESLMARFE 425

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K     I  EI E+
Sbjct: 426 LTDAQAQAIVDMRLRTLTGLERERLEAEYAELMKRIGELKAILADEKLLLGVIKKEITEI 485

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS----- 537
            + +        R+T+       +     + +I +E + + ++  G+I+ +   +     
Sbjct: 486 SDKYGD-----DRKTSI---GFDEFDFTVEDLIPEENVVITMTRLGYIKRMTPDNFKSQN 537

Query: 538 ---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                +  +   + D+++      T + ++  +  GK Y L A  +        G AI  
Sbjct: 538 RGGKGIKGMQTIDEDNIEELFMTSTHEYLMFFTNLGKVYRLKAYEIPEAGRTARGTAIIN 597

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + I        Y+    L + + KG       ++     + G   + +  +++
Sbjct: 598 LLQLAPEEKITAVIPIREYNEDHYLFMATKKGLVKKTPITDYANVRKTGLAAISLREDDE 657

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V        + +V    + + F    +    R   GV   +  DG     +    C+
Sbjct: 658 LIEVKFTDNHKDILLVTAYGQCIRFHETDVRSTGRVSMGVIGINLMDGDEVVGMQL-DCQ 716

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G   +  + +   +        +  RGG G    K   ++G  +++
Sbjct: 717 GEYMLIVSEKGMGKLTAMEEFKVQNRGGKGVKCYKILEKTGNVIAA 762



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 6/169 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L+A+  +E D L           ILL++  G+       ++ S       +   I+L  
Sbjct: 646 GLAAISLREDDELIEVKFTDNHKDILLVTAYGQCIRFHETDVRSTGRVSMGVIG-INLMD 704

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL---KVSSEEKMKLVVK 655
             ++V   +      +L+VS KG   +    E     R GK       +     +     
Sbjct: 705 GDEVVGMQLDCQGEYMLIVSEKGMGKLTAMEEFKVQNRGGKGVKCYKILEKTGNVIAAKA 764

Query: 656 VT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           V     + ++     ++      I  ++R   GV+L + +       I 
Sbjct: 765 VNYDSDIMIINTEGIIIQMPCSDISVLNRITSGVKLMNLEKDVQVASIT 813


>gi|191636830|ref|YP_001985996.1| DNA gyrase, A subunit [Lactobacillus casei BL23]
 gi|190711132|emb|CAQ65138.1| DNA gyrase, A subunit [Lactobacillus casei BL23]
 gi|327380869|gb|AEA52345.1| DNA gyrase, A subunit [Lactobacillus casei LC2W]
 gi|327384033|gb|AEA55507.1| DNA gyrase, A subunit [Lactobacillus casei BD-II]
          Length = 873

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/762 (30%), Positives = 393/762 (51%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E   A   L+DNP+ +   L++ + GPDFPTGG +V  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGG-VVMGKSGIRHAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D 
Sbjct: 241 IVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++ L+ ++T F  NM  +     P+V+ L  IL+ +L H+ 
Sbjct: 301 MRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIV-NGAPKVLSLKQILQYYLDHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTEN 426
            V+ RR+ F ++    R  IL+GL IA  +IDEII IIR+ +       +++ +F L++ 
Sbjct: 360 NVIRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F
Sbjct: 420 QSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                  +RRT          +   + +IE+E + + +S+ G+++               
Sbjct: 480 GD-----KRRTELL--VGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D ++  +   T D +L  +  GK Y      +       +   I  L+ +
Sbjct: 533 GIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLLGV 592

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              + I T        +    L  V+ KG        E       G   L +  E+++  
Sbjct: 593 GAGEKIQTVINVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNN 652

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+  +G D++ +       + F    +  M R   GVR    ++     V    +     
Sbjct: 653 VILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREHDYV-VGSDILKPDSE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + Y +        +  RGG G        ++G    
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGPLAG 753



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  L AL+ K+ D L   +     D IL+ +  G + T    ++ S       ++  
Sbjct: 633 NIRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRG- 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L  +  +V + +     ++ V+S KG        E     R GK      +   +   
Sbjct: 692 IRLREHDYVVGSDILKPDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGP- 750

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  V  V G + + V+ ++  ++ F+I  + +  R   GVRL    D      +     E
Sbjct: 751 LAGVTTVDGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPE 810

Query: 708 GLT 710
              
Sbjct: 811 SDD 813


>gi|227533500|ref|ZP_03963549.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188829|gb|EEI68896.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 873

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/762 (30%), Positives = 393/762 (51%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E   A   L+DNP+ +   L++ + GPDFPTGG +V  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGG-VVMGKSGIRHAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D 
Sbjct: 241 IVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++ L+ ++T F  NM  +     P+V+ L  IL+ +L H+ 
Sbjct: 301 MRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIV-NGAPKVLSLKQILQYYLDHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTEN 426
            V+ RR+ F ++    R  IL+GL IA  +IDEII IIR+ +       +++ +F L++ 
Sbjct: 360 NVIRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F
Sbjct: 420 QSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                  +RRT          +   + +IE+E + + +S+ G+++               
Sbjct: 480 GD-----KRRTELL--VGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D ++  +   T D +L  +  GK Y      +       +   I  L+ +
Sbjct: 533 GIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLLGV 592

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              + I T        +    L  V+ KG        E       G   L +  E+++  
Sbjct: 593 GAGEKIQTVINVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNN 652

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+  +G D++ +       + F    +  M R   GVR    ++     V    +     
Sbjct: 653 VILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREHDYV-VGSDILKPDSE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + Y +        +  RGG G        ++G    
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGPLAG 753



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  L AL+ K+ D L   +     D IL+ +  G + T    ++ S       ++  
Sbjct: 633 NIRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRG- 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L  +  +V + +     ++ V+S KG        E     R GK      +   +   
Sbjct: 692 IRLREHDYVVGSDILKPDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGP- 750

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  V  V G + + V+ ++  ++ F+I  + +  R   GVRL    D      +     E
Sbjct: 751 LAGVTTVDGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPE 810

Query: 708 GLT 710
              
Sbjct: 811 SDD 813


>gi|300818170|ref|ZP_07098382.1| DNA gyrase, A subunit [Escherichia coli MS 107-1]
 gi|300529314|gb|EFK50376.1| DNA gyrase, A subunit [Escherichia coli MS 107-1]
          Length = 875

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       GK  +K+   +++  V   +G D V +     K++ F    +  M
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714

Query: 682 S-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                GVR     +G     +     +G   + +    Y +           R   G + 
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGLVVGA 786



 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848


>gi|260911414|ref|ZP_05918005.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634461|gb|EEX52560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 871

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/772 (29%), Positives = 385/772 (49%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VG+V+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E I+  +D+D VD  + ++    EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKLGERIMDDLDKDTVDMDENFDATLQEPQVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNP+I  E L++YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNMPTHNLAEVLDGCCAYIDNPDIDTEGLMQYIKAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E       IV++EIPY V K++LIE IA+L+   R+  + +  DES
Sbjct: 240 GRGRIVLRAKAEI-ESDESHDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVVLNKLFKMTQLQSSFSVNNIALVK-GRPRLLTLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR  + P     +   RF 
Sbjct: 358 EHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVQIIRKSETPSEAQRNLEKRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E   L     ++  +L+  ++    +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRIEQLHAEYKELEELIARLQLILDDPEECKRVMKLELEEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE F        RRT              +     +P+ + +S+ G+I+           
Sbjct: 478 KEKFGD-----VRRTEIIPDEHE---FNAEDFYPNDPVVITVSHLGYIKRTPLSEFHEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V     + ++ D  +    A     +L  +  G+ Y L    +  G    +  AIQ 
Sbjct: 530 RGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDKTSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L++++ +  +             +     ++  +  G                G   + +
Sbjct: 590 LLNIDADDSVNAFLRVKGLNDVDFIKNHYIVFATKNGTVKKTSLEAYSRPRTNGVNAITI 649

Query: 645 SSEEKMKLVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDV 700
           +  +++  V    G ++ +    N + + F  + +  M R   GVR       D  +  +
Sbjct: 650 AEGDEVVDVRLTNGKNLLIMANRNGRAVYFDENTVRTMGRTATGVRGMRLDGGDDAVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I     E  T +  +   Y +           RGG G        ++GK ++
Sbjct: 710 IVVNDPETETVMVVSETGYGKRSFVADYRKTNRGGKGVKTLNITDKTGKLVA 761



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 87/251 (34%), Gaps = 12/251 (4%)

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
                    +         I+ +  I +  +     R          K      +   + 
Sbjct: 568 YWLKCYEIPEGDKTSKGRAIQNLLNIDADDSVNAFLRVKGLNDVDFIKNHYI--VFATKN 625

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            TV  ++       +++   ++A+   EGD +      +  + +++ + +G+A       
Sbjct: 626 GTVKKTSLEAYSRPRTN--GVNAITIAEGDEVVDVRLTNGKNLLIMANRNGRAVYFDENT 683

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRK 637
           + +       ++ +     +  +V   V +   T  ++VVS  G       ++     R 
Sbjct: 684 VRTMGRTATGVRGMRLDGGDDAVVGMIVVNDPETETVMVVSETGYGKRSFVADYRKTNRG 743

Query: 638 GKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY 692
           GK    ++  +K   +  +  VT D  + ++ ++   +  ++     M R  +GVRL + 
Sbjct: 744 GKGVKTLNITDKTGKLVAIKNVTDDNDLMIINKSGIAIRLAVANFRVMGRATQGVRLINL 803

Query: 693 -KDGGISDVIC 702
            K   +   +C
Sbjct: 804 SKKNDVIASVC 814


>gi|145298929|ref|YP_001141770.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851701|gb|ABO90022.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 934

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/841 (31%), Positives = 394/841 (46%), Gaps = 100/841 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G
Sbjct: 1   MSD----LAREITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VRLAQ F  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM +++  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ EI    LALI+N  ++I++L+ YI GPDFPTG  I+  R  IV++YR 
Sbjct: 177 GMATNIPPHNLTEIVNGCLALIENGNLTIDELMTYITGPDFPTGA-IINGRAGIVQAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRA+  VE +       I+V E+PYQV K+RLIEKIAEL+  K++  +  +RDE
Sbjct: 236 GRGSVYVRAKAEVEVDDKTSRETIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++T F +NM  L     P+VM L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRGESGEIVLNNLYKHTQLQTTFGINMVALD-NNQPKVMNLKDILDAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           L HRREV+ RR+ F ++    R  IL+GL +A  NID II +IR+ D P           
Sbjct: 355 LLHRREVVTRRTVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARG 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL  L  LE  +I
Sbjct: 415 WELGNVAAMLEKAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGKI 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E  +LL    ++  +L S ++    I  E+  V+E +          ++         
Sbjct: 475 LEEYQSLLDLIAELLFILASPERLMEVIRDELLAVREQYGDERRTEISASSAEINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D ++  L A+T D IL  S
Sbjct: 535 TPEDVVVTLSHQGYVKYQPITDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           T GK Y L    L        G  I  L+ L   + I        Y     +   ++ G 
Sbjct: 595 TRGKVYWLKVYQLPEASRGARGRPIINLLPLEEGERITAILPVKEYADDKYVFFATADGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI------ 675
                 S        G   + +   +++  V    G + + +  +  K++ F+       
Sbjct: 655 VKKTSLSAFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSGRAD 714

Query: 676 ----------------------DQ--------------------IPEMSRGK-GVRLQSY 692
                                 D                     +  M R   GVR    
Sbjct: 715 AADADVSDDVDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPMGRTAGGVRGIRL 774

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +G     +     EG   + +    Y +           RG  G    K   R+GK + 
Sbjct: 775 LNGDKVVSLIVPRGEGA-ILTATENGYGKRTALTEYPTKSRGTQGVRSIKVDERNGKVID 833

Query: 753 S 753
           +
Sbjct: 834 A 834



 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 2/114 (1%)

Query: 634 NTRKGKTFLKVSSEEKMKL-VVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS 691
            T  G   +++ + +K+   +V      +    EN      ++ + P  SRG +GVR   
Sbjct: 764 RTAGGVRGIRLLNGDKVVSLIVPRGEGAILTATENGYGKRTALTEYPTKSRGTQGVRSIK 823

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +     +   ++ +    +                 +  R   G  + +   
Sbjct: 824 VDERNGKVIDAIQVDDTDQIMLITNGGTLVRTRVSEVSIIGRNTGGVRLIRTGE 877


>gi|116493580|ref|YP_805314.1| DNA gyrase, A subunit [Lactobacillus casei ATCC 334]
 gi|116103730|gb|ABJ68872.1| DNA gyrase subunit A [Lactobacillus casei ATCC 334]
          Length = 873

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/762 (30%), Positives = 394/762 (51%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E   A   L+DNP+ +   L++ + GPDFPTGG +V  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGG-VVMGKSGIRHAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D 
Sbjct: 241 IVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++ L+ ++T F  NM  +     P+V+ L  IL+ +L H+ 
Sbjct: 301 MRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIV-NGAPKVLSLKQILQYYLDHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTEN 426
            V+ RR+ F ++  + R  IL+GL IA  +IDEII IIR+ +       +++ +F L++ 
Sbjct: 360 NVIRRRTQFDLRKANAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F
Sbjct: 420 QSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                  +RRT          +   + +IE+E + + +S+ G+++               
Sbjct: 480 GD-----KRRTELL--VGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D ++  +   T D +L  +  GK Y      +       +   I  L+ +
Sbjct: 533 GIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLLGV 592

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              + I T        +    L  V+ KG        E       G   L +  E+++  
Sbjct: 593 GAGEKIQTVINVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNN 652

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+  +G D++ +       + F    +  M R   GVR    ++     V    +     
Sbjct: 653 VILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREHDYV-VGSDILKPDSE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + Y +        +  RGG G        ++G    
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGPLAG 753



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  L AL+ K+ D L   +     D IL+ +  G + T    ++ S       ++  
Sbjct: 633 NIRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRG- 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L  +  +V + +     ++ V+S KG        E     R GK      +   +   
Sbjct: 692 IRLREHDYVVGSDILKPDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGP- 750

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  V  V G + + V+ ++  ++ F+I  + +  R   GVRL    D      +     E
Sbjct: 751 LAGVTTVDGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPE 810

Query: 708 GLT 710
              
Sbjct: 811 SDD 813


>gi|225028833|ref|ZP_03718025.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353]
 gi|224953829|gb|EEG35038.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353]
          Length = 852

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/771 (30%), Positives = 395/771 (51%), Gaps = 38/771 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +SN    + +  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MDDSNIF--DKIHEVDLKNTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRILYSMIELN 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD 
Sbjct: 59  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQDWSTRYPLVDGHGNFGSVDGDG 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   + +D VDF   ++E + EP + PS+FPNLL NG  GIAV
Sbjct: 119 AAAMRYTEARLSKISMEMTADIYKDTVDFVPNFDETEKEPSILPSRFPNLLVNGAQGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E  +  + +IDN      +  I++LLE + GPDFPTG  I+  R+ I 
Sbjct: 179 GMATNIPPHNLRETIDGVVKIIDNQVEEDRDTEIDELLEIVKGPDFPTGAAIL-GRKGID 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG  +VRA   +E +  G   I+VTE+PY V K+RLIEKIA+L+  KRI  + +
Sbjct: 238 QAYRTGRGKIKVRAVTNIEPMKNGKQRIIVTELPYMVNKARLIEKIADLVKEKRIDGITE 297

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES      +     + ++ ++L++ +F  + ++  F + M  L     P+V+ L  +
Sbjct: 298 LRDESDRSGMRICIETRKDVNANVLLKQLFKHTQLQDTFGVIMLALVD-NQPKVLNLKEM 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           L  +L H+++V+ RR+ + +     R  IL+GLL A   IDE+I IIR          + 
Sbjct: 357 LVHYLNHQKDVVTRRTKYELNKAKERAHILEGLLKALDYIDEVIEIIRASKNVAEARDNL 416

Query: 420 --RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             RF  ++ Q  AI+++RLR+L  LE  ++++E D L  +  +++++L   K     I  
Sbjct: 417 IKRFEFSQAQAQAIVDMRLRALTGLEREKLQNEYDELEKKIAELEAILADEKVLLGVIRE 476

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           EI  +++ +        RRT+        +    +A+I ++   +  S  G+I+ +   +
Sbjct: 477 EILLIRDKYGD-----DRRTSI---EMDMEDLSDEALIPRKDAIITFSKLGYIKRMTPDN 528

Query: 538 --------VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  ++  + D ++      T + I+  +  G+ Y L    +        G
Sbjct: 529 FHSQNRGGKGIKGMNVIDEDHIEDLFMTSTHNYIMFFTNKGRVYRLKGYEIPESSRTARG 588

Query: 588 EAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  L+ L   + I              L++ +  G        E     + G   + +
Sbjct: 589 VNIINLLQLQPEEKITAIIPLSEDGKQHYLVMATRNGIVKKTGFDEYKNVRKNGLAAISL 648

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              +++  V +    + + +V    + + F +  + E  R   GV   +   G   +V+ 
Sbjct: 649 REGDELIEVKQTDENEDIFLVSREGQCIRFKLQDVRETGRVSMGVIGMNL--GDTDEVVG 706

Query: 703 FKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +I  EG   +  + +   +        +  RGG G    K   ++G  + 
Sbjct: 707 MQIHSEGDDLLIVSEKGMGKRTPLDEFTVQHRGGKGLRCYKITEKTGYVIG 757



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 64/188 (34%), Gaps = 8/188 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++   G+          L+A+  +EGD L         + I L+S +G+       ++  
Sbjct: 626 IVKKTGFDEYKNVRKNGLAAISLREGDELIEVKQTDENEDIFLVSREGQCIRFKLQDVRE 685

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                  +  + +L    ++V   ++     LL+VS KG        E     R GK   
Sbjct: 686 TGRVSMGVIGM-NLGDTDEVVGMQIHSEGDDLLIVSEKGMGKRTPLDEFTVQHRGGKGLR 744

Query: 642 ---LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              +   +   +  V  +   + + ++     ++    D I  + R   GV+L +     
Sbjct: 745 CYKITEKTG-YVIGVKTIKPEEEIMLITTEGIVIRMKSDSISVIGRNTSGVKLINIDADS 803

Query: 697 ISDVICFK 704
              V    
Sbjct: 804 DIKVASVA 811


>gi|239630810|ref|ZP_04673841.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301065133|ref|YP_003787156.1| DNA gyrase subunit A [Lactobacillus casei str. Zhang]
 gi|239527093|gb|EEQ66094.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300437540|gb|ADK17306.1| DNA gyrase, A subunit [Lactobacillus casei str. Zhang]
          Length = 873

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/762 (30%), Positives = 393/762 (51%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E   A   L+DNP+ +   L++ + GPDFPTGG +V  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGG-VVMGKSGIRHAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D 
Sbjct: 241 IVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++ L+ ++T F  NM  +     P+V+ L  IL+ +L H+ 
Sbjct: 301 MRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIV-NGAPKVLSLKQILQYYLDHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTEN 426
            V+ RR+ F ++    R  IL+GL IA  +IDEII IIR+ +       +++ +F L++ 
Sbjct: 360 NVIRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F
Sbjct: 420 QSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                  +RRT          +   + +IE+E + + +S+ G+++               
Sbjct: 480 GD-----KRRTELL--VGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D ++  +   T D +L  +  GK Y      +       +   I  L+ +
Sbjct: 533 GIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLLGV 592

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              + I T        +    L  V+ KG        E       G   L +  E+++  
Sbjct: 593 GAGEKIQTVINVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNN 652

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+  +G D++ +       + F    +  M R   GVR    ++     V    +     
Sbjct: 653 VILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREHDYV-VGSDILKPDSE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + Y +        +  RGG G        ++G    
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGPLAG 753



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  L AL+ K+ D L   +     D IL+ +  G + T    ++ S       ++  
Sbjct: 633 NIRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRG- 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L  +  +V + +     ++ V+S KG        E     R GK      +   +   
Sbjct: 692 IRLREHDYVVGSDILKPDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGP- 750

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  V  V G + + V+ ++  ++ F+I  + +  R   GVRL    D      +     E
Sbjct: 751 LAGVTTVDGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPE 810

Query: 708 GLT 710
              
Sbjct: 811 SDD 813


>gi|327480943|gb|AEA84253.1| DNA gyrase subunit A [Pseudomonas stutzeri DSM 4166]
          Length = 935

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/835 (30%), Positives = 414/835 (49%), Gaps = 105/835 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDN +I+I++L+++I GPDFPT G I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAG-IINGRAGIIEAYRTGRGRIYI 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 243 RARADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+ + L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALVD-GQPRTLNLKELLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ + ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL+LRL  L  LE  ++ +E   
Sbjct: 422 EAMVERAGADACRPENLDPQYGLRDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +L +  +    I  E+  VK  F  +     RRT   E   +        
Sbjct: 482 ILTQIGELIRILTNPVRLMEVIREELEGVKRDFGDA-----RRTEILE---SRLDLTLAD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      +A   KE D ++  L A++   +LL
Sbjct: 534 LITEEERVVTISHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD-------------- 609
            S+ GK Y L    +        G  +  L+ L+  + I      D              
Sbjct: 594 FSSKGKVYWLKTYEIPEASRTSRGRPLVNLLPLDEGERITAMLQVDLEALRKQAAEGDEE 653

Query: 610 -----------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                                        +   + + ++KG        +       G  
Sbjct: 654 LDDAEGLVIEHDDVDDVEGDDDSDEKDEPTGAYIFMATAKGTVKKTPLVQFSRPRTSGLI 713

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            LK+   + +       G   V +  +  K++ F   ++  M R  +GVR     +G   
Sbjct: 714 ALKLEEGDTLIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIMGRNARGVRGMRLPEGQRI 773

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      G   + ++ R Y +           RGG G +      R+G  + +
Sbjct: 774 ISMLI-PEPGAQILTASVRGYGKRTAMEEFPRRGRGGQGVIAMVTNERNGPLVGA 827



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 59/158 (37%), Gaps = 7/158 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +++ S  GK        +     +   ++ +  L   Q I++  + +   ++L  S +
Sbjct: 733 QEVMMFSDGGKVIRFKESKVRIMGRNARGVRGMR-LPEGQRIISMLIPEPGAQILTASVR 791

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G        E     R G+  + + + E+    +  V  + G+ + ++ +   L+   +D
Sbjct: 792 GYGKRTAMEEFPRRGRGGQGVIAMVTNERNGPLVGAVQVLEGEEIMLISDQGTLVRTRVD 851

Query: 677 QIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWI 712
           ++  + R  +GV L     G  +  +   +       +
Sbjct: 852 EVSSLGRNTQGVTLIKLSKGEHLVGLERVQEPSEEEVL 889


>gi|148559566|ref|YP_001258735.1| DNA topoisomerase IV subunit A [Brucella ovis ATCC 25840]
 gi|148370823|gb|ABQ60802.1| DNA topoisomerase IV, A subunit [Brucella ovis ATCC 25840]
          Length = 775

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/759 (59%), Positives = 587/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++ +EIL G LIAYLN+DE+I IIR ED
Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKCLEILGGFLIAYLNLDEVIRIIREED 436

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 437 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 496

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 497 WKKISTEIKAVREKFGPTTRLGKRRTTFTHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 556

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 557 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 616

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 617 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 676

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 677 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 736

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 737 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775


>gi|270296695|ref|ZP_06202894.1| DNA gyrase, A subunit [Bacteroides sp. D20]
 gi|270272682|gb|EFA18545.1| DNA gyrase, A subunit [Bacteroides sp. D20]
          Length = 842

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/758 (30%), Positives = 395/758 (52%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDLSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++  ++++ VD ++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A I+N +I IE+L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  + E G     IVVTEIPY V K+ LI+ IA+L   K+I  + +  DES  +   
Sbjct: 241 MRARAEI-ETGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR +V
Sbjct: 300 IVIDVKRDANASIVLNKLYKMTMLQTSFGVNNVALVH-GRPRLLNLKDLIKHFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF L+E Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFQLSEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  +  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGSKGTETRDA 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  +  G        +     + G   + +  ++++  V    G
Sbjct: 599 RVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNG 658

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
           D  + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  T + 
Sbjct: 659 DNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPEAETIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +  +        RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLV 756


>gi|221641196|ref|YP_002527458.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides KD131]
 gi|221161977|gb|ACM02957.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides KD131]
          Length = 767

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/769 (50%), Positives = 524/769 (68%), Gaps = 27/769 (3%)

Query: 6   ISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++     E     +  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 1   MTDTPEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEAR+T +AEL+++G+ E+AVDFR  Y+    EPVV P+ FPNLLANG SGI
Sbjct: 121 DNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ E  LALI +P I+ + L+  I GPDFPTGG+IVE +E I+E+Y
Sbjct: 181 AVGMATNIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+RA+W  E++GRG+W IVVTEIPYQVQKS+LIE++AELI  K++P L D+RD
Sbjct: 241 RTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+DVRIVL P+ R++DP++LM  +F  SD+E RF LNMNVL  GR P+V  L  +L+ 
Sbjct: 301 ESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI-------------------- 403
           +L HRR+VL RRS  RM+ ID R+E+L GL++A+LN+D +                    
Sbjct: 361 FLDHRRDVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWE 420

Query: 404 --IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                  +E            L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+  +
Sbjct: 421 RRFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADL 480

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           ++L+ S + QW++I  ++ E++++F K T  G RRT F E +   +    +AMIE+EPIT
Sbjct: 481 EALIGSERLQWDRIGHDLGEIRKLFGKWTVAGARRTQFAE-AGEVEEVPLEAMIEREPIT 539

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V+ S  GWIR++K H    +   FK+GD  +   HA TTDR+LL+ ++G+ YTL   +L 
Sbjct: 540 VICSQMGWIRAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLP 599

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG GE ++L++DL +  +I   FV+    KLL+ SS G+ F+V   E++A TR GK  
Sbjct: 600 GGRGMGEPVRLMVDLPNEAEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAV 659

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
           L +    +  +   V GDHVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I
Sbjct: 660 LSMKEGVRTAVCRPVRGDHVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAI 719

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            F+I  GL+W D AGR   R+E +L  W   R G G + P+GFPR  +F
Sbjct: 720 TFEIARGLSWKDPAGR--TRTETELAEWTAARAGAGKMAPRGFPRDNRF 766


>gi|126461103|ref|YP_001042217.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17029]
 gi|126102767|gb|ABN75445.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17029]
          Length = 767

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/769 (50%), Positives = 524/769 (68%), Gaps = 27/769 (3%)

Query: 6   ISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++     E     +  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 1   MTDTPEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEAR+T +AEL+++G+ E+AVDFR  Y+    EPVV P+ FPNLLANG SGI
Sbjct: 121 DNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ E  LALI +P I+ + L+  I GPDFPTGG+IVE +E I+E+Y
Sbjct: 181 AVGMATNIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+RA+W  E++GRG+W IVVTEIPYQVQKS+LIE++AELI  K++P L D+RD
Sbjct: 241 RTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+DVRIVL P+ R++DP++LM  +F  SD+E RF LNMNVL  GR P+V  L  +L+ 
Sbjct: 301 ESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI-------------------- 403
           +L HRR+VL RRS  RM+ ID R+E+L GL++A+LN+D +                    
Sbjct: 361 FLDHRRDVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWG 420

Query: 404 --IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                  +E            L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+  +
Sbjct: 421 RKFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADL 480

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           ++L+ S + QW++I  ++ E++++F K T  G RRT F E +   +    +AMIE+EPIT
Sbjct: 481 EALIGSERLQWDRIGHDLGEIRKLFGKWTVAGARRTQFAE-AGEVEEVPLEAMIEREPIT 539

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V+ S  GWIR++K H    +   FK+GD  +   HA TTDR+LL+ ++G+ YTL   +L 
Sbjct: 540 VICSQMGWIRAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLP 599

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG GE ++L++DL +  +I   FV+    KLL+ SS G+ F+V   E++A TR GK  
Sbjct: 600 GGRGMGEPVRLMVDLPNEAEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAV 659

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
           L +    +  +   V GDHVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I
Sbjct: 660 LSMKEGVRTAVCRPVRGDHVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAI 719

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            F+I  GL+W D AGR   R+E +L  W   R G G + P+GFPR  +F
Sbjct: 720 TFEIARGLSWKDPAGR--TRTETELAEWTAARAGAGKMAPRGFPRDNRF 766


>gi|229551098|ref|ZP_04439823.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258538198|ref|YP_003172697.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705]
 gi|229315559|gb|EEN81532.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257149874|emb|CAR88846.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705]
          Length = 870

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/762 (30%), Positives = 393/762 (51%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPE 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E   A   L+D+P+ +   L++ + GPDFPTGG +V  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGG-VVMGKSGIRHAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D 
Sbjct: 241 IVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++ L+ ++T F  NM  +     P+V+ L  IL+ +L H+ 
Sbjct: 301 MRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIV-NGAPKVLSLKQILQYYLDHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII IIR+ +       +++ +F+L++ 
Sbjct: 360 NVIRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F
Sbjct: 420 QSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                  +RRT          +   + +IE+E + + +S+ G+++               
Sbjct: 480 GD-----KRRTELL--VGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D ++  +   T D +L  +  GK Y      +       +   I  L+ +
Sbjct: 533 GIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLLGV 592

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              + I T        +    L  V+  G        E       G   L +  ++++  
Sbjct: 593 GAGEKIQTVINVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNN 652

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+  +G D++ +       + F    +  M R   GVR    +D     V    +     
Sbjct: 653 VILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYV-VGSDILKPDSE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + Y +        +  RGG G        ++G    
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKNGPLAG 753



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  L AL+ K+ D L   +     D IL+ +  G +      ++ S       ++  
Sbjct: 633 NIRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRG- 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L  +  +V + +     ++ V+S KG        E     R GK      +   +   
Sbjct: 692 IRLRDHDYVVGSDILKPDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKNGP- 750

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +  V  V G + + V+ ++  ++ F+I  + +  R   GVRL    D      + 
Sbjct: 751 LAGVTTVDGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMA 805


>gi|332560122|ref|ZP_08414444.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides WS8N]
 gi|332277834|gb|EGJ23149.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides WS8N]
          Length = 767

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/769 (50%), Positives = 525/769 (68%), Gaps = 27/769 (3%)

Query: 6   ISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++     E     +  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 1   MTDTPEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEAR+T +AEL+++G+ E+AVDFR  Y+    EPVV P+ FPNLLANG SGI
Sbjct: 121 DNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ E  LALI +P I+ + L+  I GPDFPTGG+IVE +E I+E+Y
Sbjct: 181 AVGMATNIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRGGFR+RA+W  E++GRG+W IVVTEIPYQVQKS+LIE++AELI  K++P L D+RD
Sbjct: 241 RTGRGGFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+DVRIVL P+ R++DP++LM  +F  SD+E RF LNMNVL  GR P+V  L  +L+ 
Sbjct: 301 ESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI-------------------- 403
           +L HRR+VL RRS  RM+ ID R+E+L GL++A+LN+D +                    
Sbjct: 361 FLDHRRDVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWG 420

Query: 404 --IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                  +E            L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+  +
Sbjct: 421 RRFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADL 480

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           ++L+ S + QW++I  ++ E++++F K T  G RRT F E +   +    +AMIE+EPIT
Sbjct: 481 EALIGSERLQWDRIGHDLGEIRKLFGKWTVAGARRTQFAE-AGEVEEVPLEAMIEREPIT 539

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V+ S  GWIR++K H    +   FK+GD  +   HA TTDR+LL+ ++G+ YTL   +L 
Sbjct: 540 VICSQMGWIRAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLP 599

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG GE ++L++DL +  +I   FV+    KLL+ SS G+ F+V   E++A TR GK  
Sbjct: 600 GGRGMGEPVRLMVDLPNEAEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAV 659

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
           L +    +  +   V GDHVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I
Sbjct: 660 LSMKEGVRTAVCRPVRGDHVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAI 719

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            F+I  GL+W D AGR   R+E +L  W   R G G + P+GFPR  +F
Sbjct: 720 TFEIARGLSWKDPAGR--TRTETELAEWTAARAGAGKMAPRGFPRDNRF 766


>gi|323137539|ref|ZP_08072616.1| DNA topoisomerase IV, A subunit [Methylocystis sp. ATCC 49242]
 gi|322397165|gb|EFX99689.1| DNA topoisomerase IV, A subunit [Methylocystis sp. ATCC 49242]
          Length = 754

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/733 (55%), Positives = 541/733 (73%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V LR ALEERYL YALSTI +RA+PD RDG KPVHRRI++ M  + LD GA FKK A+
Sbjct: 21  TPVDLREALEERYLRYALSTITDRALPDARDGLKPVHRRILYGMHVLRLDPGAPFKKCAK 80

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGNIDGDSAAAYRYTEARMT
Sbjct: 81  IVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDSAAAYRYTEARMT 140

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            VA  +L+G+DEDA+DF+  Y+ E+ EP+V PS  PN+LANG  GIAVGMATSIP HN+ 
Sbjct: 141 SVARGLLEGIDEDAIDFKPNYSGEEKEPIVLPSALPNMLANGAQGIAVGMATSIPPHNLA 200

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C+AAL LI +   + E+LL ++ GPDFPTGGIIV+ RE IVE+YR GRG FRVRARW 
Sbjct: 201 ELCDAALYLISHRNATSEQLLTFVQGPDFPTGGIIVDRREEIVEAYRTGRGSFRVRARWT 260

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            EE+ RG W  VVTEIPY VQKSRLIEK+AELI  +++PL+ D+RDESAEDVRIVL P++
Sbjct: 261 KEELPRGGWVAVVTEIPYGVQKSRLIEKLAELISERKLPLVADVRDESAEDVRIVLEPRS 320

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R++D  L+ME++F LS++ETRF +NMNVL  G  P+V+ LD  L++WL HRREVL RRS 
Sbjct: 321 RNIDAALMMETLFKLSELETRFGMNMNVLVDGVTPRVVSLDEALRQWLDHRREVLQRRSR 380

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
            R+ AI RR+E L+G++I +LN+DE+I IIR ED  K  +   F LT+ QVD IL+ RLR
Sbjct: 381 HRLAAILRRIEQLEGMIIVFLNLDEVIRIIREEDDAKGELKKAFKLTDLQVDYILDTRLR 440

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
           SLRKLEE +++ EL  L  E+  I++LL    +QW  IA ++RE+K+I+   T++G+RRT
Sbjct: 441 SLRKLEEMELRRELKELTDERADIEALLADDGRQWKTIAAQVRELKKIYGPQTEIGKRRT 500

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           TF +   A    L +AMIE+EPITVV+S +GWIR+LK H  DLS L FK  D L  +  A
Sbjct: 501 TFEDAPAAVDLDLAEAMIEREPITVVVSKKGWIRALKGHVQDLSTLQFKGDDELDTSFFA 560

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
            TT +IL+L+T+GKAYTL A  L  GRGHGE I+L  D++ +  +     ++    LL+V
Sbjct: 561 QTTSKILVLATNGKAYTLDASKLPGGRGHGEPIRLFADIDEDASVARVLPHEPQASLLLV 620

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
           +  G  F+V + +++++T+KG+  L V    ++K+V +  GDHVA++GENRKLL+F +++
Sbjct: 621 ADDGRGFVVAQDDLLSSTKKGRAVLNVEPPARLKVVTEAAGDHVAIIGENRKLLVFPLEE 680

Query: 678 IPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
            P M+RGKGVR+Q YKDGG++D   F + +GLTW DS+GR +   + +L  W+G R   G
Sbjct: 681 APRMARGKGVRMQRYKDGGVADAKVFSLADGLTWTDSSGRVFTVEKLELKEWIGHRAEAG 740

Query: 738 SLVPKGFPRSGKF 750
            L P+GFPR+ +F
Sbjct: 741 RLPPRGFPRNNRF 753


>gi|307708736|ref|ZP_07645199.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261]
 gi|307615310|gb|EFN94520.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261]
          Length = 822

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 399/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L   KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLXQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLI+  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLISLDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----QRRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRIAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GV+  + +DG         I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYSIRFNQSAVRGMSRIATGVKGVNLRDGDTVVGASV-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGSLAG 750


>gi|329963590|ref|ZP_08301069.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057]
 gi|328528579|gb|EGF55550.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057]
          Length = 848

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/758 (30%), Positives = 396/758 (52%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQP+  RY ++ GQGNFG++DGDSAAA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMMVDGQGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD ++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPNRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN EI IE+L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACVAYIDNNEIDIEELMNYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E G     IVVTEIPY V K+ LI+ IA+L   K+I  + +  DES  +   
Sbjct: 241 MRAKAEI-ETGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  +++ ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVH-GRPRLLNLKDLIRYFIEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF LTE Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLMERFQLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELVEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  +  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGSRGTDTRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  ++  +  G        +     + G   + +  ++++  V    G
Sbjct: 599 RVKNLNDQEFINSHYVVFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNG 658

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
           D  + +   N + + F    +  M R   GVR  +  + G   +  +IC K  +  T + 
Sbjct: 659 DNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPDTETIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +  +        RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLV 756


>gi|167748048|ref|ZP_02420175.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662]
 gi|317472424|ref|ZP_07931749.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
 gi|167652528|gb|EDR96657.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662]
 gi|316900144|gb|EFV22133.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
          Length = 828

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/768 (31%), Positives = 391/768 (50%), Gaps = 35/768 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + NT+  + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+   
Sbjct: 2   DENTIF-DKVHDVDLKQTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNG 60

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AA
Sbjct: 61  PDKPHRKCARIVGDAMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAA 120

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+++++  +L  + +D V+F   ++E + EP V PS+FPNLL NGT GIAVGM
Sbjct: 121 AMRYTEARLSKISMELLADIGKDTVNFIPNFDETEKEPQVLPSRFPNLLVNGTQGIAVGM 180

Query: 188 ATSIPSHNVQEICEAALALI-----DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           AT+IP HN+ E+  A + +I      N    IE+LL+ + GPDFPTG  I+  +  I ++
Sbjct: 181 ATNIPPHNLTEVINAVVKIIDDQVERNQVTDIEELLDIVKGPDFPTGATIL-GKAGISQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  +VRA   +E +  G   IVVTE+PY V K+RLI+KIAEL+  K++  + +IR
Sbjct: 240 YRTGRGKIKVRAVTDIEPMANGKQRIVVTELPYMVNKARLIQKIAELVKDKKVDGITEIR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      +     R  + ++++  +F  + M+  F + M  L     P+++ L  +L 
Sbjct: 300 DESDRTGMRICIELRRDANANVVLNRLFKHTQMQDTFGVIMLSLV-NNEPKILNLFDMLN 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVS 419
            +L H+++V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR           ++ 
Sbjct: 359 YYLEHQKDVVTRRTKYELNKAEERAHILEGLLIAQDNIDEVIKIIRAAANITEAKTQLME 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+LT+ Q  AI+++RLR+L  LE  +++ E + L+A+  ++ ++L   K     I  E+
Sbjct: 419 RFALTDAQAQAIVDMRLRALNGLERAKLEKEYNELMAKITELKAILADEKLLLGVIKDEL 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------ 533
             +++ +        RRT+             + +I +E   + ++  G+I+ +      
Sbjct: 479 VLIRDKYGDE-----RRTSI---GFDVDDISMEDLIPRENTIITMTKLGYIKRMTVDTFK 530

Query: 534 --KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEA 589
                   +  +   + D ++      +   I+  +  G+ Y + A  +        G A
Sbjct: 531 SQNRGGKGIKGMQTIDEDYIEELFMTTSHHYIMFFTNMGRVYRMKAYEIPESSRTARGTA 590

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  LI L   + I        Y     L + +  G        E     + G   + +  
Sbjct: 591 IVNLIQLQPEEKITAVIPINEYKEDHYLFMATKSGVVKKSPIMEYANIRKTGLLAITLKE 650

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
            +++  V     D  V +V +N + + F    +  + R   GVR  +  DG    +    
Sbjct: 651 NDELIEVKFTDNDQDVFLVTKNGQCIRFHETDVRSIGRTAMGVRGINL-DGDDEVIGMQL 709

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +G   +  +     +           RGG G    K   ++G  + 
Sbjct: 710 NSQGEALLFVSENGMGKRTAMTEFTPQHRGGKGIRCYKITEKTGDVVG 757



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 89/299 (29%), Gaps = 21/299 (7%)

Query: 423 LTENQVDAILNLRLRSL-RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +T  ++  I  + + +   +    +    +  +  +  +   +  S              
Sbjct: 513 ITMTKLGYIKRMTVDTFKSQNRGGKGIKGMQTIDEDYIEELFMTTSHHYIMFFTNMGRVY 572

Query: 482 VKEIFSKSTDLGRRRTTFC--------EVSRADKATLQQAMIEKEPITVVIS----NRGW 529
             + +         R T          E        + +   +        S        
Sbjct: 573 RMKAYEIPESSRTARGTAIVNLIQLQPEEKITAVIPINEYKEDHYLFMATKSGVVKKSPI 632

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +         L A+  KE D L           + L++ +G+       ++ S       
Sbjct: 633 MEYANIRKTGLLAITLKENDELIEVKFTDNDQDVFLVTKNGQCIRFHETDVRSIGRTAMG 692

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVS 645
           ++  I+L+ + +++   +      LL VS  G       +E     R GK      +   
Sbjct: 693 VRG-INLDGDDEVIGMQLNSQGEALLFVSENGMGKRTAMTEFTPQHRGGKGIRCYKITEK 751

Query: 646 SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           + + +  V  V  +  V ++     ++   +D I  + R   GV+L +  D  I   + 
Sbjct: 752 TGD-VVGVKAVDEENEVMMITTEGVVIRMGVDGISMLGRNTSGVKLMNLDDNVIVASLA 809



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/414 (11%), Positives = 120/414 (28%), Gaps = 8/414 (1%)

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA   + E          +T+   Q      +  +  L  AK      ++  +  E  
Sbjct: 402 IIRAAANITEAKTQLMERFALTDAQAQAIVDMRLRALNGLERAKLEKEYNELMAKITELK 461

Query: 310 RIVLFPKN---RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            I+   K       D  +L+   +      +      ++     +P+   +  + K    
Sbjct: 462 AILADEKLLLGVIKDELVLIRDKYGDERRTSIGFDVDDISMEDLIPRENTIITMTKLGYI 521

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R  V   +S  R     + ++ +    I  L +      I        V   +      
Sbjct: 522 KRMTVDTFKSQNRGGKGIKGMQTIDEDYIEELFMTTSHHYIMFFTNMGRVYRMKAYEIPE 581

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
                    + +L +L+  +  + +  +   KE     + +      +            
Sbjct: 582 SSRTARGTAIVNLIQLQPEEKITAVIPINEYKEDHYLFMATKSGVVKKSPIMEYANIRKT 641

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                  +      EV   D    Q   +  +    +  +   +RS+   ++ +  ++  
Sbjct: 642 GLLAITLKENDELIEVKFTDND--QDVFLVTKNGQCIRFHETDVRSIGRTAMGVRGINLD 699

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
             D +         + +L +S +G                G+ I+         D+V   
Sbjct: 700 GDDEVIGMQLNSQGEALLFVSENGMGKRTAMTEFTPQHRGGKGIRCYKITEKTGDVVGVK 759

Query: 607 VYDSTCKLLVVSSKGNAFI--VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
             D   ++++++++G      V+   ++     G   + +     +  + KV  
Sbjct: 760 AVDEENEVMMITTEGVVIRMGVDGISMLGRNTSGVKLMNLDDNVIVASLAKVRD 813


>gi|302035398|ref|YP_003795720.1| DNA gyrase subunit A [Candidatus Nitrospira defluvii]
 gi|300603462|emb|CBK39792.1| DNA gyrase, subunit A [Candidatus Nitrospira defluvii]
          Length = 820

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/753 (32%), Positives = 398/753 (52%), Gaps = 14/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             +E +  +++   +   YL YA+S I  RA+PD+RDG KPVHRRI+H M+EMGL     
Sbjct: 2   PPDERLGQIAIEDEMRSSYLDYAMSVIVGRALPDVRDGLKPVHRRILHGMNEMGLAANRP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+IVGE++G  HPHGD ++YD+LVR+AQ F  RY L+ GQGN+G++DGD+AAA RY
Sbjct: 62  YRKSAKIVGEIMGNYHPHGDSAIYDTLVRMAQNFNMRYMLVDGQGNYGSMDGDAAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T++AE +L  ++++ VDF   Y+E   EP+V PS+ PNLL NG  GIAVG AT+I
Sbjct: 122 TEARLTKLAEELLADIEKETVDFGPNYDESRVEPLVLPSRVPNLLVNGAGGIAVGYATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ E  L L++NPE++I +L++ I GPDFPT G  +     I ++Y  GRG   
Sbjct: 182 PTHNLGEVIEGLLLLLENPEVTIAQLMKKIPGPDFPTAG-FIYGTSGIKDAYETGRGLLT 240

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           VRA+  +E +       +++TEIPYQV KS+LIEKIA+L    R+  + DIRDES  +  
Sbjct: 241 VRAKVAIETDERTDRERLIITEIPYQVNKSKLIEKIADLAQEDRVTGISDIRDESDREGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R+  P +++ +++  S ++T F +NM  L     P+V+ L  IL+ ++ HRRE
Sbjct: 301 RVVIELKRNEIPLVVLNNLYKHSQLQTTFGVNMLALV-NNRPEVLNLKRILEAFVEHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+++ ++  + R  IL+GL IA  N+D +IA+IR    P   +  ++ +F L+E Q
Sbjct: 360 VVVRRTAYDLRKAEERAHILEGLKIALDNLDAVIALIRRSQSPDVARTGLMQQFRLSEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL +RL+ L +LE  ++  E   +L   E + S+L S       I  E+ E+KE + 
Sbjct: 420 ANAILEMRLQRLTQLERDKLVEEYREVLKTIEYLRSVLGSEALVRKIIRDELTEIKEKYQ 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +           A  +  +       +  +     R+ +       A+  KE
Sbjct: 480 DERRTKIVKEEAELTLEDLIAEEEVVVTISHAGYIKRNAVTLYRAQRRGGKGKIAMGIKE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D ++    A T D +L  +  GK Y L    +        G+A+  L+ L+ ++ +   
Sbjct: 540 EDFVETLFTASTHDSLLFFTDAGKVYWLKVHEIPEASRAAKGKALVNLLALSKDEKVTAT 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                      +++ + +G     E S      + G   L + + +K+  V    G   +
Sbjct: 600 LPVKEYRADRFVIMGTKQGVIKKTELSAYSNPRQGGIIALSLDAGDKLIGVDLTDGQREI 659

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSY 719
            +  +    + F  + +  M R   GVR  + + G  +  +           +      Y
Sbjct: 660 LLGTKQGITIRFKEEDVRAMGRTAHGVRGITLEPGDEVIGMETITPDSTTAILTVTEGGY 719

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +        +  RGG G +  K   R+G  + 
Sbjct: 720 GKRTPVNEYRVQGRGGKGIISVKTTERNGPAVG 752



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 8/148 (5%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA--FVYDSTCKLLVVSSKGNAF 624
           +  G        ++ +           I L    +++       DST  +L V+  G   
Sbjct: 663 TKQGITIRFKEEDVRAMGRTA-HGVRGITLEPGDEVIGMETITPDSTTAILTVTEGGYGK 721

Query: 625 IVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680
               +E     R GK  + V     +   +  +     D + ++    K+L   +D I E
Sbjct: 722 RTPVNEYRVQGRGGKGIISVKTTERNGPAVGFLQVRDEDEIMLMAAQGKVLRCKVDDIRE 781

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICE 707
           + R  +GVRL          V   ++ E
Sbjct: 782 IGRNTQGVRLLDMDGDEDRVVAVVRLVE 809


>gi|114565582|ref|YP_752736.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114336517|gb|ABI67365.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 812

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/748 (32%), Positives = 401/748 (53%), Gaps = 14/748 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V  + +   +++ +L Y++S I  RA+PD+RDG KPVHRRI++A+ E G+      KK
Sbjct: 8   EKVIPIDIEKEVKKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYALHEQGMTHDKPHKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+GK HPHGD ++Y ++V+LAQ F  RYPL+ G GNFG+IDGD+AAA RYTE+
Sbjct: 68  SANIVGEVMGKYHPHGDAAIYQTMVKLAQEFAMRYPLVDGHGNFGSIDGDAAAAMRYTES 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ +D+D VD+R  Y+E   EP V P++ PNLL NG++GIAVGMAT+IP H
Sbjct: 128 RMSRIAAELLKDIDKDTVDWRPNYDESREEPQVLPARIPNLLLNGSAGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI +     IDNP+I+IE+L++ I GPDFPTGGI+      I ++Y  GRG  R RA
Sbjct: 188 NLREIVKGIKEYIDNPDITIEELMQSIPGPDFPTGGILE--ARGIRQAYETGRGTIRTRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R+ +EE   G + IVVTEIPYQV K+RL+EKIAEL+  K++  + D+RDES      ++ 
Sbjct: 246 RYEIEEKKGGKFSIVVTEIPYQVNKARLVEKIAELVRDKKVEGIVDLRDESDRKGIRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ ++++  +F  + ME  F + M  L     P+++ L  +++ ++ HR+EV+ R
Sbjct: 306 ELRKDVNVNVILNKLFRHTQMEDSFGIIMLSLV-NGEPRILNLKEMIQYYVEHRQEVINR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           R+++ +     R  IL+GL IA  N+DEII +IRN    +       SRF+L+E Q +AI
Sbjct: 365 RTTYELNLAKNRKHILEGLKIALDNLDEIINLIRNSRDRENARGELQSRFNLSEIQANAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL  L  LE  ++++E + +L      + +L   ++  + I  ++ ++++ +  +  
Sbjct: 425 LDMRLVQLTGLERSKVENEYEEVLLRIADYEDILARPERVLSMIKEDLDDIEKRYGDNRR 484

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               +              +  +       V        RS K     +SA   +  D  
Sbjct: 485 TEISQEESSYEEEDFIDDHEVVITLSNRGYVKRQPLDTYRSQKRGGKGVSATTIRAEDFA 544

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF--- 606
              L       +L  +  G+ +T  A  +       +   +   ++L   + + T     
Sbjct: 545 HDVLVTSALATLLFFTNQGRVFTTRAFQIPESSRQAKGMPLVNFLELRPGEKVTTIVGAR 604

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
            ++    LL+V+ KG              + G   + +  ++++  V++V TG  V +  
Sbjct: 605 EFNREHHLLMVTKKGIIKKTALKAFQNVRKSGLIAVNLREDDELVGVIRVKTGSKVMIAN 664

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
                ++F   Q+  M R   GV+  +        V   +  EG   +    + Y +   
Sbjct: 665 SRGISIMFDEKQVRSMGRTAAGVKAINLSKDDYV-VGLDRYREGADVLLVTEKGYGKRTA 723

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                L  RGG G    +   R+GK ++
Sbjct: 724 LSEFKLQNRGGKGLKAIEITRRNGKLVA 751



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 75/222 (33%), Gaps = 7/222 (3%)

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           R           +   ++  +       +I               L A++ +E D L   
Sbjct: 592 RPGEKVTTIVGAREFNREHHLLMVTKKGIIKKTALKAFQNVRKSGLIAVNLREDDELVGV 651

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +   T  ++++ ++ G +       + S      A    I+L+ +  +V    Y     +
Sbjct: 652 IRVKTGSKVMIANSRGISIMFDEKQVRSMGRTA-AGVKAINLSKDDYVVGLDRYREGADV 710

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           L+V+ KG       SE     R GK      +   + + +   +    D + ++     +
Sbjct: 711 LLVTEKGYGKRTALSEFKLQNRGGKGLKAIEITRRNGKLVAFQIVSKEDELVILTSEGNI 770

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLT 710
           +   ++ I +  R  +GV L    +   I  V  FKI +   
Sbjct: 771 IRLEVEDISQQKRYSRGVLLMRLPEEDRIVGVARFKIEKEED 812


>gi|225377590|ref|ZP_03754811.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM
           16841]
 gi|225210566|gb|EEG92920.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM
           16841]
          Length = 871

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/766 (31%), Positives = 395/766 (51%), Gaps = 34/766 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  + + +  V L+  +E  Y+ YA+S I +RA+PD+RDG KPV RR++++M E+     
Sbjct: 2   DDKIFDQIHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++++  +L  +++D VDF   ++E + EP V PS++PNLL NGT+GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           +IP HN++E+  A + +IDN         IE+LL  + GPDFPTG +I+     I E+YR
Sbjct: 182 NIPPHNLREVIHAVVKIIDNEVLEDRGTDIEELLSIVKGPDFPTGAMIL-GTTGINEAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D+RDE
Sbjct: 241 TGRGKIRVRAITNIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLRDE 300

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      +     R ++P++++  ++  + M+  F + M  L     P+V+ L  +L  +
Sbjct: 301 SDRQGMRICIELRRDVNPNVVLNLLYKHTQMQDTFGVIMLALVD-NQPKVLNLQEMLGYY 359

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421
           L H+++V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR+             RF
Sbjct: 360 LDHQKDVVTRRTKYDLNKAEERAHILEGLLIALDNIDEVINIIRSSANTPEAKNRLIERF 419

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SLT+ Q  AI+++RLR+L  LE  +I++E   L+    ++ ++L   K+    I  EI  
Sbjct: 420 SLTDVQAQAIVDMRLRALTGLEREKIEAEYAELMDRIAELKAILADEKKLLGVIREEILL 479

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------- 533
           + E +        RRT+       +     + +I      + ++  G+I+ +        
Sbjct: 480 IAEKYGDE-----RRTSI---GFDEYDISMEDLIPVTNTVIAMTKLGYIKRMSLDNFRAQ 531

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQ 591
                 +  +   + D ++  L   +   ++  +  G+ Y + A  +        G AI 
Sbjct: 532 NRGGKGIKGMETIDEDYIEELLMTTSHHYMMFFTNTGRVYRMKAYEIPEAGRTARGTAII 591

Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+ L   + I        Y     L + +  G       ++     + G   + +  ++
Sbjct: 592 NLLQLQPGEKITAVIPIKEYTEGHYLFMATKNGIVKKTPITDYANVRKTGLAAITLREDD 651

Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
           ++  V K   +  + +V +  + + F+   +    R   GV   +  DG     +  +  
Sbjct: 652 ELIEVKKTDNEQDIFLVTKYGQCIRFNERDVRSTGRTSMGVIGMNLTDGDKVVGMQME-S 710

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +  + +   +           RGG G    K   ++G  + 
Sbjct: 711 QGDALMIVSEKGLGKCTLASEFTAQNRGGKGVKCYKITEKTGNIVG 756



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 76/279 (27%), Gaps = 21/279 (7%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +     Y +       +   +  +        +   I   ++       +  +       
Sbjct: 554 MTTSHHYMMFFTNTGRVYRMKAYEIPEAGRTARGTAIINLLQL------QPGEKITAVIP 607

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
             E +      +       +   +                 L+A+  +E D L       
Sbjct: 608 IKEYTEGHYLFMATKNGIVKKTPITDYANVRKT-------GLAAITLREDDELIEVKKTD 660

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               I L++  G+       ++ S       +  + +L     +V   +      L++VS
Sbjct: 661 NEQDIFLVTKYGQCIRFNERDVRSTGRTSMGVIGM-NLTDGDKVVGMQMESQGDALMIVS 719

Query: 619 SKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIF 673
            KG       SE  A  R GK      +   +   +  V  V   D + ++     ++  
Sbjct: 720 EKGLGKCTLASEFTAQNRGGKGVKCYKITEKTGN-IVGVKAVNQDDEMMLITTEGIIIRI 778

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +     + R   GV+L +  D      I     +    
Sbjct: 779 KVSDTALLGRVTSGVKLMNLADDVTVASIAKVREDKSLM 817


>gi|329117185|ref|ZP_08245902.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020]
 gi|326907590|gb|EGE54504.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020]
          Length = 842

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/753 (31%), Positives = 387/753 (51%), Gaps = 15/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF++ Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQENYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NPE++   L+E I GPDFPTG ++   R  I  +Y  GRG   
Sbjct: 181 PPHNLGESIDAVKLVMENPEVTTRDLMEVIPGPDFPTGAMV-MGRSGIHRAYDTGRGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKNGRERIVVTEFPYGVNKTKVHEHIVRLAQDKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +     VP+++ L  I+  ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLRQIIDNYILHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIR        +  ++ RF L+E Q 
Sbjct: 359 ITRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRKSQTDVIAQAELMQRFELSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L+  ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDALIALIADLADILSKPERVQTIIIEEMDEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
           +            +   D    +  +I    +  +    +   R+ K     +      +
Sbjct: 479 ARRTELMVGEVLSLEDEDLIEEEDVLITLSNMGYIKRLAQDEFRAQKRGGRGVQGTGVND 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L+  + I T 
Sbjct: 539 DDFVRELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDDGETIQTI 598

Query: 606 FVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                   +       +  G       SE     + G   L +  ++++  V+   G + 
Sbjct: 599 INARKVEVADKYFFFTTKGGVVKRTSASEFNNIRQNGLRALNLKEDDELINVLLTDGTED 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +   +   + F+   I  M R   GVR    +D  +  V   +I +    +      Y
Sbjct: 659 IIIGTRSGYSVRFNESSIRNMGRSATGVRGVKLRDEDMV-VGASRITDDQEVLIITENGY 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +           RGG G        ++G    
Sbjct: 718 GKRTAASEYPTKGRGGKGIKTANITAKNGPLAG 750



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 5/111 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           + L     +V A       ++L+++  G       SE     R GK      +   +   
Sbjct: 689 VKLRDEDMVVGASRITDDQEVLIITENGYGKRTAASEYPTKGRGGKGIKTANITAKNGPL 748

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
             L      + + ++     ++  SI  + +  R   GVR+          
Sbjct: 749 AGLTTVSGDEDMMIITNKGVIIRTSISNVSQTGRATLGVRVMRLDQDSKIV 799


>gi|156888533|gb|ABU96671.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|323127219|gb|ADX24516.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 834

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/756 (31%), Positives = 393/756 (51%), Gaps = 21/756 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +     VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRRDASANVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q 
Sbjct: 359 ITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA- 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
             +  R      EV   +   L +             +    +   R+ K     +    
Sbjct: 478 --NSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTG 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             + D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L   + I
Sbjct: 536 VNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETI 595

Query: 603 VTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            T                 + +G     E SE     + G   L +   +++  V+   G
Sbjct: 596 QTIINARKEETAGKSFFFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            D + +  ++   + F+   I  M R   GVR  S ++     V   +I +    +    
Sbjct: 656 QDDIIIGTQSGYSVRFNEASIRNMGRSATGVRGVSLREDDRV-VGASRINDHQEVLVITE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +           RGG G       P++G+   
Sbjct: 715 NGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 57/160 (35%), Gaps = 8/160 (5%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            +  D I++ +  G +      ++ +       ++  + L  +  +V A   +   ++LV
Sbjct: 653 TNGQDDIIIGTQSGYSVRFNEASIRNMGRSATGVRG-VSLREDDRVVGASRINDHQEVLV 711

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           ++  G     E +E     R GK      +   +  ++  +V V G + + V+     ++
Sbjct: 712 ITENGYGKRTEATEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVII 770

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
             ++  I +  R   GV++                 +   
Sbjct: 771 RTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEE 810


>gi|111013719|gb|ABH03380.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824]
          Length = 829

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/763 (34%), Positives = 421/763 (55%), Gaps = 31/763 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L+ ++++ V++  +++E YL Y++S I  RA+PD RDG KPVHRRI++AM E+G+   
Sbjct: 2   SDLLNQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSK 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           A +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGDSAAA 
Sbjct: 62  AKYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+MTQ AE +L+ +D+D VDF   Y++   EP + PS+ PNLL NG++GIAVGMAT
Sbjct: 122 RYTEAKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP H V EI +A + LIDNP+  + ++L+++ GPDFPTGG I+  +  I E+Y  GRG 
Sbjct: 182 NIPPHRVDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGG-IIYGKNGIREAYETGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA+  +E+       IV+ EIPYQV K+RL+E+IAEL   K I  + ++RDES  + 
Sbjct: 241 IKVRAKTHIEKTKTK-DIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    ++++  +F  + ME+ F + + +    + P++  L  +L  +++HR+
Sbjct: 300 IRVVIELKREAMSEIVLNHLFKSTPMESTFGI-ILLAIYNKEPKIFTLLELLGLFISHRK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ F ++    R  IL+GL IA  NIDEI+++IR+   P   K  ++S+F+L+E 
Sbjct: 359 SVVIRRTIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQFNLSEI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I++E   LL E E ++S+L S       I  E+ EVKE F
Sbjct: 419 QAQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILRSEDLLNKIIKEELLEVKEKF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           S      +R T   E   +      + +I  E + V +S+RG+++               
Sbjct: 479 ST-----KRLTAIEEDYES---IDMEDLIPNEAVVVTMSHRGYVKRVPVRTYEKQNRGGK 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
              + +  + D ++    + T D I+ ++  G+ Y L    +        G+A+  LI+L
Sbjct: 531 GKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIGKAVVNLINL 590

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I+       ++    +   +  G       SE       G   + +   +++   
Sbjct: 591 APDEKIMATITTKDFNEDKSIAFFTKNGIIKRTNLSEFKNIRSVGVRAINLDENDELVTA 650

Query: 654 VKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGL 709
             ++     + VV      + FS+D + E+ R  +GV    +K              E  
Sbjct: 651 KIISPAIQQILVVTYEGMCVRFSVDNVREIGRVARGVTAIKFKIPKDYVIGATVVSNENE 710

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + +   +        +  RGG G +  K   ++GK + 
Sbjct: 711 EILSVSEKGIGKRTEINEYRITNRGGKGVIAMKLTSKTGKLVG 753



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 123/364 (33%), Gaps = 24/364 (6%)

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----M 417
            E+    +E+ +  S  R + +  ++   + L +      + +  I  + +   +     
Sbjct: 441 NEYQELLKEIEYLNSILRSEDLLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDMEDLIP 500

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                +T +    +  + +R+  K           N   +       ++        I  
Sbjct: 501 NEAVVVTMSHRGYVKRVPVRTYEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITN 560

Query: 478 -----EIREVKEIFSKSTDLGRRRTTFCEVSRADKAT--LQQAMIEKEPITVVISNRGWI 530
                 ++  K   +  T +G+       ++  +K    +      ++      +  G I
Sbjct: 561 KGQLYWLKVYKIPEASRTAIGKAVVNLINLAPDEKIMATITTKDFNEDKSIAFFTKNGII 620

Query: 531 RS------LKSHSVDLSALHFKEGDS-LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           +           SV + A++  E D  +   + +    +IL+++ +G        N+   
Sbjct: 621 KRTNLSEFKNIRSVGVRAINLDENDELVTAKIISPAIQQILVVTYEGMCVRFSVDNVREI 680

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGK--T 640
                 +  +        ++ A V  +   ++L VS KG     E +E     R GK   
Sbjct: 681 GRVARGVTAIKFKIPKDYVIGATVVSNENEEILSVSEKGIGKRTEINEYRITNRGGKGVI 740

Query: 641 FLKV-SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
            +K+ S   K+  VV V  +  + V+  + K++   +  I +  R   GV + +  D  +
Sbjct: 741 AMKLTSKTGKLVGVVNVDENMDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVNVDDDKV 800

Query: 698 SDVI 701
             + 
Sbjct: 801 VSIA 804


>gi|313159353|gb|EFR58717.1| DNA gyrase, A subunit [Alistipes sp. HGB5]
          Length = 851

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/763 (30%), Positives = 393/763 (51%), Gaps = 19/763 (2%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS-EMG 65
              N  +   +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI++ MS E+ 
Sbjct: 5   EEKNAGLVGRIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRILYDMSAELN 64

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L      +KSARIVG+V+GK HPHGD SVYD++VRLAQ +  RYPL+ GQGNFG++DGDS
Sbjct: 65  LYSDKPTRKSARIVGDVLGKFHPHGDTSVYDAMVRLAQDWSMRYPLVDGQGNFGSMDGDS 124

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM ++ + ++  +D++ VD+   +++   EP V P+K P L+ NG SGIAV
Sbjct: 125 PAAMRYTEARMKKITDEVMADIDKETVDWTLNFDDTIPEPTVLPTKIPLLIVNGASGIAV 184

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ E+ +A  A IDNPEI+ E++L+YI GPDFPTGG I+   E + E+   
Sbjct: 185 GMATNMAPHNLSEVVDACCAYIDNPEITGEEMLQYIKGPDFPTGG-IIYGYEGVREAMLT 243

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E    G  CIV+TEIPY + K+ +I+KIA++I  K+I  +  I DES
Sbjct: 244 GRGRVMMRAKTDIEHTPSGRECIVITEIPYMINKAEMIKKIADMINEKKIEGISYINDES 303

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++          +++ ++F  + ++T F +N   L     PQ++P+  ++K ++
Sbjct: 304 DRNGLRIIIILKHDAVASVVLNTLFKNTPLQTSFAVNNIALV-NGRPQMLPMRDLVKHFV 362

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            HR +V+ RR+ F ++  + R+ I++GLLIA  NIDEI+ IIR+   P     +    F+
Sbjct: 363 DHRHDVVVRRARFDLKKAEERLHIVQGLLIAQDNIDEIVHIIRSSQTPDAAKQTMIERFN 422

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AI+ +RLR+L  LE  ++ +E D L  +   +  +L +   Q   I  E+ E+
Sbjct: 423 LSDIQASAIIEMRLRALTGLEYGKLIAERDELTKQIAYLKEVLENVGMQMQIIKDELLEI 482

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +          ++         A     +       +  +     R+     V    
Sbjct: 483 KEKYGDERRSEIVYSSEEFNPEDFYADDDMVITISHMGYIKRTPLAEYRTQNRGGVGAKG 542

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
              ++ D ++    A   + +L  +  G+ + L    +  G    +  AIQ +I +  + 
Sbjct: 543 SATRDEDFIEHIYVASMHNTMLFFTEKGRCFWLKVYEIPEGARSSKGRAIQNVIQIEPDD 602

Query: 601 DIVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +               +   +++ +  G     +        + G   + +   +++  
Sbjct: 603 KVRAYINVKRLNDEEYVNNNFIIMCTKDGTIKKTKLEAYSRPRQNGVNAIVIREGDQLIE 662

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGL 709
               +G   V +   + K + F+   +  + R G GVR  S ++   +  +IC +     
Sbjct: 663 AKLTSGQAEVMIAARDGKAIRFNESTVRPIGRVGAGVRGISIEESDEVVGMICVEPDSKQ 722

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +   Y +  +     +  RGG G        ++GK +S
Sbjct: 723 DVLVLSENGYGKRTDLDEYRITNRGGKGVKTINVTEKTGKLIS 765



 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/435 (12%), Positives = 133/435 (30%), Gaps = 25/435 (5%)

Query: 301 IRDESAEDVRIVLFPKNRSLDP-DLLMESIFMLSDMETR--FPLNMNVLSMGRVPQVMPL 357
           +  +   D  + +   +++ D     M   F LSD++      + +  L+     +++  
Sbjct: 391 LIAQDNIDEIVHIIRSSQTPDAAKQTMIERFNLSDIQASAIIEMRLRALTGLEYGKLIAE 450

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
              L + +A+ +EVL           D  +EI +       +     +   N +      
Sbjct: 451 RDELTKQIAYLKEVLENVGMQMQIIKDELLEIKEKYGDERRSEIVYSSEEFNPEDFYADD 510

Query: 418 VSRFSLTENQVDA---ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
               +++         +   R ++   +      +  ++ +                   
Sbjct: 511 DMVITISHMGYIKRTPLAEYRTQNRGGVGAKGSATRDEDFIEHIYVASMHNTMLFFTEKG 570

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
               ++  +      +  GR      ++   DK      +        V +N   + +  
Sbjct: 571 RCFWLKVYEIPEGARSSKGRAIQNVIQIEPDDKVRAYINVKRLNDEEYVNNNFIIMCTKD 630

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILL---LSTDGKAYTLPAGNLLSGRGHGE--- 588
                     +       +          L+   L++      + A +  + R +     
Sbjct: 631 GTIKKTKLEAYSRPRQNGVNAIVIREGDQLIEAKLTSGQAEVMIAARDGKAIRFNESTVR 690

Query: 589 ------AIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKT 640
                 A    I +  + ++V     +   K  +LV+S  G     +  E     R GK 
Sbjct: 691 PIGRVGAGVRGISIEESDEVVGMICVEPDSKQDVLVLSENGYGKRTDLDEYRITNRGGKG 750

Query: 641 F--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
              + V+ +  K+  +  VT D  + ++  +   +  ++ QI    R  +GVR+ + ++G
Sbjct: 751 VKTINVTEKTGKLISIQAVTDDNDLMIINRSGLTIRTAVSQIRLAGRATQGVRIINLREG 810

Query: 696 GISDVICFKICEGLT 710
                +      G  
Sbjct: 811 DAIASVMAVPAAGDE 825


>gi|332638147|ref|ZP_08417010.1| DNA gyrase subunit A [Weissella cibaria KACC 11862]
          Length = 865

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/757 (29%), Positives = 385/757 (50%), Gaps = 16/757 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                   +K   L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+  
Sbjct: 3   EEEQNNSRIKPAKLGEQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTP 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG+IDGD AAA
Sbjct: 63  DKQHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSIDGDPAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR++++A  +L+ +++D +DF D Y+  D EPVV P++FPNLL NG +GIAVGMA
Sbjct: 123 MRYTEARLSKIATEMLRDINKDTIDFADNYDGTDREPVVLPARFPNLLVNGANGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+  A   L++NP+++  +L+E + GPDFPTG  IV  +  I ++Y  G+G
Sbjct: 183 TNIPPHNLGEVISAIHMLMNNPDVTTAELMEAVPGPDFPTGA-IVMGKSGIRKAYETGKG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +E    G   I+VTE+PY V K++LIE+IAEL   KRI  +  + DES + 
Sbjct: 242 VVTVRAKVEIETEKSGKERIIVTELPYMVNKAKLIERIAELGREKRIEGITAVNDESDQT 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R +   +++ +++  + M+T F  NM  +     P+++ L  +L  +L H+
Sbjct: 302 GYRIAIDIRRDVSASVVLNNLYKNTLMQTGFSFNMLAVQD-GRPKLLGLKAMLVAYLEHQ 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTE 425
           + V+ RR+ F ++  + R  IL+GL IA  +ID II+IIR  +     K  +++ ++L++
Sbjct: 361 QIVVRRRTEFELRKAEARAHILEGLRIALDHIDAIISIIRGSETSEIAKNRLMTDYALSD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  LE  +I+ E   L+        +L   ++    I  E+ E++E 
Sbjct: 421 KQAQAILDMRLVRLTGLERGKIEDEYQGLMTAIADYKDILAKPERIDEIIYTELLEIQEK 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALH 544
           +        +      +   D    +  ++       +    +   R+       +  + 
Sbjct: 481 YGDERRTELQIGDVTSIEDEDLIEEEDIIVSLTSAGYIKRMAQTEFRAQNRGGRGVQGMG 540

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             + D +   +   T D +L  +  GK Y +    +       +   +  L+ +   + +
Sbjct: 541 VNDDDFIDQLIGTSTHDTLLFFTNAGKVYKMKGYEIPEYGRSAKGIPVVNLLGIEAGESV 600

Query: 603 VTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            T         +S   L   +  G       S+       G   + ++ ++++  V+   
Sbjct: 601 QTVINVRGEASESEDFLFFTTRYGKVKKTPVSDFSNIRTHGLKAITLNDDDELINVMITD 660

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G +++ +       + F+ D +  M R   GVR  + +D     +    + +  + +   
Sbjct: 661 GTENLLIGTHGGYAVSFNADAVRSMGRSAAGVRGITLRDDDFV-IGAEILKDDASVLVIT 719

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG G    +   ++G    
Sbjct: 720 EKGYGKQTPVDQYPIKGRGGKGIKTAQITEKNGPLAG 756



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 8/225 (3%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           + G    T   V      +            V  +      ++++H   L A+   + D 
Sbjct: 595 EAGESVQTVINVRGEASESEDFLFFTTRYGKVKKTPVSDFSNIRTH--GLKAITLNDDDE 652

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L   +    T+ +L+ +  G A +  A + +   G   A    I L  +  ++ A +   
Sbjct: 653 LINVMITDGTENLLIGTHGGYAVSFNA-DAVRSMGRSAAGVRGITLRDDDFVIGAEILKD 711

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGE 666
              +LV++ KG        +     R GK      +   +     L V    + + +   
Sbjct: 712 DASVLVITEKGYGKQTPVDQYPIKGRGGKGIKTAQITEKNGPLAGLAVVDGSEDIMLTTN 771

Query: 667 NRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT 710
              ++ F++D + E  R  +GVR+    D  I         E  T
Sbjct: 772 KGVMIRFTVDSVSETGRATQGVRVIRLDDDAIVATFAKVEHEEDT 816


>gi|225868522|ref|YP_002744470.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
 gi|225701798|emb|CAW99217.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
          Length = 831

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/756 (30%), Positives = 392/756 (51%), Gaps = 21/756 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++++  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E + GPDFPTG  +V  R  I ++Y  G+G   
Sbjct: 181 PPHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGA-LVMGRSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY + K+++ E I  L   KRI  +  +RDES+     
Sbjct: 240 LRSRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +   G +P+++ L  I+  ++ H+++V
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSF-NMLAIEGGIPKILSLRQIIDNYILHQKDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 ITRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILARPERIEAIIKEEMEEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                R      EV   +   L +             +    +   RS K     +    
Sbjct: 479 P---RRTELMIGEVLSLEDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQGTG 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             + D ++  +   T D +L  +  G+ Y L A  +       +   +  L+ L+  + I
Sbjct: 536 VNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLKLDDGETI 595

Query: 603 VTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            T                 + +G     E SE     + G   L +   +++  V+   G
Sbjct: 596 QTIINAKKEDILDKYFFFTTKQGIVKRTEVSEFSNIRQNGLRALNLKEGDELINVLLTNG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            + + +   +   + F+   I  M R   GVR    ++     V   +I +    +    
Sbjct: 656 QEDIIIGTRSGYSVRFNEATIRGMGRSATGVRGVKLREEDWV-VGASRINDNQEVLVITE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +  +        RGG G        ++G+   
Sbjct: 715 NGYGKRTSAAEYPTKGRGGKGIKTANITAKNGQLAG 750



 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 7/121 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           + L     +V A   +   ++LV++  G       +E     R GK      +   +  +
Sbjct: 689 VKLREEDWVVGASRINDNQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKNG-Q 747

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  ++ V G + + V+     ++  ++  I +  R   GV++                 E
Sbjct: 748 LAGLMTVDGSEDIMVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVTFTLVQAE 807

Query: 708 G 708
            
Sbjct: 808 D 808


>gi|251782323|ref|YP_002996625.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390952|dbj|BAH81411.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 834

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/756 (31%), Positives = 393/756 (51%), Gaps = 21/756 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +     VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRRDASANVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q 
Sbjct: 359 ITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA- 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
             +  R      EV   +   L +             +    +   R+ K     +    
Sbjct: 478 --NSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTG 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             + D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L   + I
Sbjct: 536 VNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETI 595

Query: 603 VTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            T                 + +G     E SE     + G   L +   +++  V+   G
Sbjct: 596 QTIINARKEETAGKSFFFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            D + +  ++   + F+   I  M R   GVR  S ++     V   +I +    +    
Sbjct: 656 QDDIIIGTQSGYSVRFNEASIRNMGRSATGVRGVSLREDDRV-VGASRINDHQEVLVITE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +           RGG G       P++G+   
Sbjct: 715 NGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 57/160 (35%), Gaps = 8/160 (5%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            +  D I++ +  G +      ++ +       ++  + L  +  +V A   +   ++LV
Sbjct: 653 TNGQDDIIIGTQSGYSVRFNEASIRNMGRSATGVRG-VSLREDDRVVGASRINDHQEVLV 711

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           ++  G     E +E     R GK      +   +  ++  +V V G + + V+     ++
Sbjct: 712 ITENGYGKRTEATEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVII 770

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
             ++  I +  R   GV++                 +   
Sbjct: 771 RTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEE 810


>gi|312114153|ref|YP_004011749.1| DNA topoisomerase IV, subunit alpha [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219282|gb|ADP70650.1| DNA topoisomerase IV, A subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 750

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/745 (56%), Positives = 559/745 (75%), Gaps = 3/745 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++   L    ++ + L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRR++ AM ++ 
Sbjct: 1   MADETILAPPPIEPIRLKDALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLFAMRQLK 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD    FKK AR+VG+VIGK HPHGDQSVYD+LVRLAQ F QRYPL+ GQGNFGNIDGD+
Sbjct: 61  LDPAGGFKKCARVVGDVIGKYHPHGDQSVYDALVRLAQSFSQRYPLVDGQGNFGNIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT +A  +L G+DED VDFR+TY+ E+ EPVV P+ FPNLLANG+SGIAV
Sbjct: 121 AAAMRYTEARMTAIAAALLDGIDEDTVDFRETYDGEEEEPVVLPAAFPNLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN  E+C+AAL LI +P+ S+E LL Y+ GPDFPTGG++V+    +VE+YR 
Sbjct: 181 GMATSIPPHNADEVCDAALYLIKHPKASVETLLTYLPGPDFPTGGVLVDDTAGLVEAYRT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FR+RARW  E+ GRG + I+VTEIPY VQKSRLIEK+A+L+ AK++PLL DI DES
Sbjct: 241 GRGSFRLRARWHTEDTGRGGYQIIVTEIPYGVQKSRLIEKMADLLQAKKLPLLGDIDDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AED+RIV+ PK+R++D  LLME +F L+++E R PLNM VLS G+VPQV+ L  +L+EWL
Sbjct: 301 AEDIRIVIEPKSRNVDAALLMEQLFRLTELEARIPLNMTVLSKGQVPQVLGLAQVLQEWL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HRR VL RRS  R++ ID R+E+L GLLIAYLN+DE+I IIRNED+PKP +++RF+LT+
Sbjct: 361 DHRRVVLRRRSEHRLREIDHRLEVLGGLLIAYLNLDEVIRIIRNEDEPKPALIARFALTD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE +I++E D L  E+E +  LL S + QW++I+ EI+ +K+ 
Sbjct: 421 VQAEAILNMRLRSLRKLEEIEIRAENDRLTTEREGLVELLGSDEMQWDRISAEIKGIKKQ 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F K+T LG+R+T            +++A+I+KEP+TVV+S +GWIR+LK H  DL+ L F
Sbjct: 481 FGKATPLGKRKTVTA-ALPDIDVAVEEALIDKEPVTVVLSEKGWIRALKGHDGDLAKLTF 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K  D LK+A+ A TTD+I+L +T+GK YTL A  L  GRG GE ++L+IDL+   +++  
Sbjct: 540 KTDDVLKVAIKAQTTDKIVLFATNGKFYTLEASELPGGRGQGEPVRLMIDLDEADELLET 599

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+    KL+V SS GN F+V E E++A TRKGK  L +   E+  L     GD VAVVG
Sbjct: 600 FVHKPGRKLVVASSVGNGFVVTEDEVVAQTRKGKQVLNLGDGERALLCRPAEGDAVAVVG 659

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENR+LL+F + ++ E++RG+GVRLQ YKDGG++DV  F    GL   D++GR   R+  +
Sbjct: 660 ENRRLLVFPLAELNELTRGRGVRLQKYKDGGLADVQVFTAATGLKLSDTSGR--VRTVTE 717

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  + G R   GS VPKG+P+SG+F
Sbjct: 718 LDEFKGARAAAGSAVPKGWPKSGRF 742


>gi|319947106|ref|ZP_08021340.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           australis ATCC 700641]
 gi|319747154|gb|EFV99413.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           australis ATCC 700641]
          Length = 820

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 395/760 (51%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDNNLVDVNLASEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF   Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVANYDANEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLMMDNPDVTTRELMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLREILGSYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN           +S+F L+E Q 
Sbjct: 359 VTRRTIFDKEKAEARAHILEGLLIALDHIDEVIKIIRNSQTDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLIALIADLADILAKPERVVAIIKEELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTEL--MVGEVLSLEDEDLIEETNVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T DR+L  +  G+ Y L    +       +   I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDD 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 592 GESIQTIINVAQDRSEDAYLFFTTRSGLVKRTSVAEFANIRQNGLKALNLKDEDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G+  V +  +    + F    +  M R   GVR  + + G         I +    +
Sbjct: 652 LTDGNTDVIIGTKFGYSVRFKESVVRNMGRSATGVRGVNLRPGDQVVGASV-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTRADEYPTKGRGGKGIKTANVADKNGPLAG 750


>gi|306829648|ref|ZP_07462838.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis
           ATCC 6249]
 gi|304428734|gb|EFM31824.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis
           ATCC 6249]
          Length = 822

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 399/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEIKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKDELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +         + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----KRRTEL--MVGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    D        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVDSESSDDAYLFFTTRHGVVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASV-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSG 750


>gi|94988622|ref|YP_596723.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429]
 gi|94992445|ref|YP_600544.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096]
 gi|94542130|gb|ABF32179.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429]
 gi|94545953|gb|ABF36000.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096]
          Length = 828

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/753 (31%), Positives = 390/753 (51%), Gaps = 15/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ ++T F     +     VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRREASATVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 IIRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +   L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDTLAKPERIITIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
                        +   D    +  +I       +    +   R+ K     +       
Sbjct: 479 PRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNN 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L   + I T 
Sbjct: 539 DDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTI 598

Query: 606 FVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                           + +G     E SE     + G   LK+   +++  V+  +G D 
Sbjct: 599 INARKEETAGKSFFFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDD 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +   +   + F+   I  M R   GVR    ++     V   +I +    +      +
Sbjct: 659 IIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDDRV-VGASRIQDNQEVLVITENGF 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +        RGG G       P++G+   
Sbjct: 718 GKRTSATDYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           + L  +  +V A       ++LV++  G       ++     R GK      +   +  +
Sbjct: 689 VKLREDDRVVGASRIQDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKNG-Q 747

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  +V V G + + V+     ++  ++  I +  R   GV++                 E
Sbjct: 748 LAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPE 807

Query: 708 GLTW 711
             + 
Sbjct: 808 DSSI 811


>gi|300811997|ref|ZP_07092453.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497023|gb|EFK32089.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 823

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/765 (29%), Positives = 396/765 (51%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+ 
Sbjct: 1   MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELA 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGG I+  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGG-ILMGRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M++ F +NM  +     P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVD-GAPKFLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN +        ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------K 534
           ++ F       +RRT     +        + +IE++ + + +S++G+++ +         
Sbjct: 479 QKRFGD-----KRRTQIT--ASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +  ++GD ++  L++ T D +   +  GK Y   A  +       +   I  
Sbjct: 532 RGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L+  + I T               ++  G     +  E       G   L +   ++
Sbjct: 592 LLQLDKGEHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDE 651

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       + F+ D +  M R   GVR  + ++G           E
Sbjct: 652 LSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMGRSAAGVRGINLREGDYVVGSGILKPE 711

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G    K   ++G    
Sbjct: 712 DE-VLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAG 755



 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 6/192 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  K+GD L   L       IL+ +  G A T    ++ +
Sbjct: 624 TVKRTKIREFENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRA 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 A    I+L     +V + +     ++L +S KG       SE     R GK   
Sbjct: 684 MGRSA-AGVRGINLREGDYVVGSGILKPEDEVLTISEKGYGKRTAASEYPVKGRGGKGIQ 742

Query: 643 KVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
                EK   +  V  V G   + ++  +  ++ F    + +  R   GVRL    DG  
Sbjct: 743 TAKIGEKNGPLAGVAVVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNA 802

Query: 698 SDVICFKICEGL 709
              +     E  
Sbjct: 803 VASMAVVPAEAE 814


>gi|110834612|ref|YP_693471.1| DNA gyrase subunit A [Alcanivorax borkumensis SK2]
 gi|110647723|emb|CAL17199.1| DNA gyrase, subunit A [Alcanivorax borkumensis SK2]
          Length = 920

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/841 (30%), Positives = 413/841 (49%), Gaps = 109/841 (12%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +   V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TDLAREVTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA R
Sbjct: 62  AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKIAHELLADLDKETVDFVDNYDGTERIPDVMPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALID+  ++ + L+EYI GPDFPT G I+  R  IV++YR GRG  
Sbjct: 182 IPPHNLGEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAG-IINGRAGIVQAYRTGRGRV 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  +E     G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES ++ 
Sbjct: 241 YMRARAEIEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  + ++++ +++  + ME+ F +N   L     P+++ L  +L  ++ HRR
Sbjct: 301 MRIVIELRRGENAEVVLNNLYQQTQMESVFGINTVALVD-GQPKILNLRELLDAFIRHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------- 419
           EV+ RR+ + ++    +  +L+GL +A  NID +I +I+                     
Sbjct: 360 EVVTRRTVYELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGD 419

Query: 420 ----------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L+  Q  AIL+LRL+ L  LE  ++ ++ 
Sbjct: 420 VLQMLERAGGENAARPDGLDEQYGLVDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             LL +  ++  +L + ++    I  E++ V+E ++       RR+       + +    
Sbjct: 480 QELLEQIAELLKILGNPERLMEVIREELQAVREEYADE-----RRSEIV---ASRQDFSM 531

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +SN G+ +     +           SA   K+ D ++  L A T D +
Sbjct: 532 EDLIAEETVVVTLSNGGYAKMQPIDTYRAQKRGGRGKSAGQLKDQDYVEHLLVAGTHDTL 591

Query: 564 LLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID-LNHNQDIVTAFVYDSTC-------- 612
           LL +  GK + L    L        G+ I  L+  L  ++ I      D+          
Sbjct: 592 LLFTNAGKVFWLRTFELPQGGRASRGKPIVNLLPALGADERITAILRLDADMVRQQKAGG 651

Query: 613 --------------------------------------KLLVVSSKGNAFIVEESEIIAN 634
                                                  + + +S G       +     
Sbjct: 652 EEDIVDVDDAADVIEDETDSDVEVEGEVEAVTDTVPGPFIFMATSSGIVKRTALANFARP 711

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
              G   +K+   E +  V    G + + +V  N K + F   ++  MSR  +GVR    
Sbjct: 712 RSSGLIAVKLQEGEHLVNVAITQGHEDIMLVARNGKAVRFHQSKVRVMSRLARGVRGIKL 771

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +G +  +      E    + ++   Y +           RGG G +      R+G+ + 
Sbjct: 772 AEG-VDVISLIVPEENGQILTASEHGYGKRTPLTDYPTKGRGGQGVIAMVINERNGELVG 830

Query: 753 S 753
           +
Sbjct: 831 A 831



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 66/168 (39%), Gaps = 6/168 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S  L A+  +EG+ L         + I+L++ +GKA       +         ++  
Sbjct: 710 RPRSSGLIAVKLQEGEHLVNVAITQGHEDIMLVARNGKAVRFHQSKVRVMSRLARGVRG- 768

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKM 650
           I L    D+++  V +   ++L  S  G       ++     R   G   + ++    ++
Sbjct: 769 IKLAEGVDVISLIVPEENGQILTASEHGYGKRTPLTDYPTKGRGGQGVIAMVINERNGEL 828

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
               +V G + + ++     L+   ++Q+    R  +GVRL    DG 
Sbjct: 829 VGATQVFGEEDIMLISNQGTLVRTGVNQVSTSGRNTQGVRLIRLADGE 876


>gi|296447775|ref|ZP_06889689.1| DNA topoisomerase IV, A subunit [Methylosinus trichosporium OB3b]
 gi|296254694|gb|EFH01807.1| DNA topoisomerase IV, A subunit [Methylosinus trichosporium OB3b]
          Length = 750

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/750 (53%), Positives = 539/750 (71%), Gaps = 1/750 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M        +    E +  V LR ALEERYL YALSTI  RA+PD RDG KPVHRRI++ 
Sbjct: 1   MAKSGTPAGDAGGGEALIPVELREALEERYLTYALSTITGRALPDARDGLKPVHRRILYG 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L   A FKK A+IVG+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 61  MQTLRLAPDAPFKKCAKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD+AAAYRYTEARMT VA L+L+G+DEDA+DFR  Y+ E+ EPVV P+  PNLLANG 
Sbjct: 121 VDGDAAAAYRYTEARMTAVARLLLEGIDEDAIDFRPNYSGEEQEPVVLPAALPNLLANGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMATS+P HN+ E+C+AAL LI + E + E+L+ ++ GPDFPTGG++V+ R  IV
Sbjct: 181 QGIAVGMATSVPPHNLAELCDAALYLISHREATAEQLMNFVQGPDFPTGGVVVDPRPQIV 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG FR+RARW  EE  RG W  VVTEIPY VQKSRLIEK+AELI+ K+ PL  D
Sbjct: 241 ETYRTGRGSFRLRARWHKEETARGQWVAVVTEIPYGVQKSRLIEKLAELIVDKKAPLAGD 300

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESAEDVR+V+ P+ R++DP L+ME++F LS++E RFP+NMNVL  G VP+V+ LD  
Sbjct: 301 VRDESAEDVRVVIEPRARAVDPALMMETLFKLSELEIRFPVNMNVLVDGAVPRVVSLDEA 360

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L++WL HRREVL RRS  R+ AI RR+E+L G++I +LN+DE+I IIR ED+PK  + S 
Sbjct: 361 LRQWLDHRREVLERRSRHRLAAIIRRLEVLDGMIIVFLNLDEVIRIIREEDEPKQALKSA 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F LT+ QVD IL+ RLR+LR+LEE +++ E + L+ E+ +I+ LL    +QW  I  +IR
Sbjct: 421 FDLTDVQVDYILDTRLRALRRLEEMELRKEREKLIEERAEIEGLLAEEAKQWKAITAQIR 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           E+K+       L +RRTTF +   A    L +A+IE+EPITVV+S +GWIR+LK H  DL
Sbjct: 481 ELKKTVGDPR-LAKRRTTFEDAPEATDIDLAEALIEREPITVVVSQKGWIRALKGHVSDL 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S L FK  D+L  +  A TT ++L L+++GKA+TL A  L  GRGHGE I+L+ +++ + 
Sbjct: 540 SQLQFKGDDALDFSFFAQTTSKVLALASNGKAFTLDASKLPGGRGHGEPIRLMAEIDEDA 599

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            IV  F++     LL+VS  G  F+V +++++A TRKG+    V    K+K+V    GDH
Sbjct: 600 AIVKVFLHTPDALLLLVSDDGRGFVVSQNDLVATTRKGRAVFNVDPPAKLKIVAPAEGDH 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VA++GENRKLL+F + + P+M+RGKGVRLQ YKDGG++D   F + +GLTW D++ R + 
Sbjct: 660 VAIIGENRKLLVFPLSEAPQMARGKGVRLQRYKDGGVADAKVFALADGLTWTDTSARVHT 719

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             + +L  W+  R   G L P+GFP++ +F
Sbjct: 720 VDKRELAEWVAHRAEAGRLPPRGFPKNNRF 749


>gi|146282687|ref|YP_001172840.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501]
 gi|145570892|gb|ABP79998.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501]
          Length = 954

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/835 (30%), Positives = 414/835 (49%), Gaps = 105/835 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +
Sbjct: 23  LAKEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 82

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYT
Sbjct: 83  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYT 142

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 143 EVRMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIP 202

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDN +I+I++L+++I GPDFPT G I+  R  I+E+YR GRG   +
Sbjct: 203 PHNLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAG-IINGRAGIIEAYRTGRGRIYI 261

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 262 RARADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 321

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+ + L  +L+ ++ HRRE
Sbjct: 322 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALVD-GQPRTLNLKELLEAFVRHRRE 380

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ + ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 381 VVTRRTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAV 440

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL+LRL  L  LE  ++ +E   
Sbjct: 441 EAMVERAGADACRPENLDPQYGLRDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQE 500

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +L +  +    I  E+  VK  F  +     RRT   E   +        
Sbjct: 501 ILTQIGELIRILTNPVRLMEVIREELEGVKRDFGDA-----RRTEILE---SRLDLTLAD 552

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      +A   KE D ++  L A++   +LL
Sbjct: 553 LITEEERVVTISHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLL 612

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD-------------- 609
            S+ GK Y L    +        G  +  L+ L+  + I      D              
Sbjct: 613 FSSKGKVYWLKTYEIPEASRTSRGRPLVNLLPLDEGERITAMLQVDLEALRKQAAEGDEE 672

Query: 610 -----------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                                        +   + + ++KG        +       G  
Sbjct: 673 LDDAEGLVIEHDDVDDVEGDDDSDEKDEPTGAYIFMATAKGTVKKTPLVQFSRPRTSGLI 732

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            LK+   + +       G   V +  +  K++ F   ++  M R  +GVR     +G   
Sbjct: 733 ALKLEEGDTLIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIMGRNARGVRGMRLPEGQRI 792

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +     +    + ++ R Y +           RGG G +      R+G  + +
Sbjct: 793 ISMLIPEPD-AQILTASVRGYGKRTAMEEFPRRGRGGQGVIAMVTNERNGPLVGA 846



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 59/158 (37%), Gaps = 7/158 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +++ S  GK        +     +   ++ +  L   Q I++  + +   ++L  S +
Sbjct: 752 QEVMMFSDGGKVIRFKESKVRIMGRNARGVRGMR-LPEGQRIISMLIPEPDAQILTASVR 810

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G        E     R G+  + + + E+    +  V  + G+ + ++ +   L+   +D
Sbjct: 811 GYGKRTAMEEFPRRGRGGQGVIAMVTNERNGPLVGAVQVLEGEEIMLISDQGTLVRTRVD 870

Query: 677 QIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWI 712
           ++  + R  +GV L     G  +  +   +       +
Sbjct: 871 EVSSLGRNTQGVTLIKLSKGEHLVGLERVQEPSEEEVL 908


>gi|303236064|ref|ZP_07322667.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN]
 gi|302483937|gb|EFL46929.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN]
          Length = 867

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/773 (28%), Positives = 389/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDQDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ ++ E ++  ++++ VD    +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLAKMGEHVMDDIEKETVDMVSNFDDTLKEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNPEI++E+L++YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNMPTHNLSEVLDGCCAYIDNPEITVEELMQYIPAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E       IVVTEIPY V K++LIE IA+L+   ++  + ++ DE+
Sbjct: 240 GRGRIIMRAKAEI-ESDDTHDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANIILNKLFKMTALQSSFSVNCIALVK-GRPRLLSLQECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            HR +V  RR+ F ++    R  IL+GL+IA  NIDE++ IIR        +  +  RF 
Sbjct: 358 EHRHDVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVRIIRASQTPADAQANLEKRFD 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AI+++RL  L  L   ++ +E D ++   + +  +LN+ ++    +  E++EV
Sbjct: 418 LDKLQSKAIVDMRLSQLTGLRMEELHAEYDEIMQTIKDLQEILNNPERCKEVMKEELQEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE +        RRT              +     +P+ + IS+ G+I+           
Sbjct: 478 KEKYGD-----VRRTEIIPDEHE---FNAEDFYPNDPVVITISHLGYIKRTPLADFKEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       +E D  +    A     +L  +  G+ + +   ++  G    +  AIQ 
Sbjct: 530 RGGVGSKGARTREKDFTEFIYPATMHQTMLFFTKKGRCFWMKCYDIPEGDKTAKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++ L+ +  +             +  +  ++  +  G                G   + +
Sbjct: 590 MLALDPDDSVNAFLRIQGLNDEEFLDSHYVVFATKCGLVKKTSLRHYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD---GGISD 699
           +  +++  V    G + + +   N +   F  D +  M R   GVR     D    G+  
Sbjct: 650 NEGDEVVDVRLTNGNNELIIANRNGRACRFHEDAVRTMGRVSTGVRGMRLDDDGEDGVIG 709

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +I     E  T +  +   Y +        L  RGG G        ++GK ++
Sbjct: 710 MIVVNDTEKETVMVVSEEGYGKRSMVEDYRLTNRGGKGVKTLNITEKTGKLVA 762



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 100/300 (33%), Gaps = 19/300 (6%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             + +  +           +  D        +   I   +           D        
Sbjct: 552 ATMHQTMLFFTKKGRCFWMKCYDIPEGDKTAKGRAIQNMLAL------DPDDSVNAFLRI 605

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
             ++  +       +   +   V  ++       +++   + A++  EGD +      + 
Sbjct: 606 QGLNDEEFLDSHYVVFATKCGLVKKTSLRHYSRPRTN--GVIAININEGDEVVDVRLTNG 663

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-IVTAFVYDSTCK--LLV 616
            + +++ + +G+A       + +       ++ +   +  +D ++   V + T K  ++V
Sbjct: 664 NNELIIANRNGRACRFHEDAVRTMGRVSTGVRGMRLDDDGEDGVIGMIVVNDTEKETVMV 723

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVV-KVTGDHVAVVGENRKLLI 672
           VS +G        +     R GK    ++  EK   +  +      + + ++ ++  ++ 
Sbjct: 724 VSEEGYGKRSMVEDYRLTNRGGKGVKTLNITEKTGKLVAIKNVTDENDLMIINQSGIVIR 783

Query: 673 FSIDQIPEMSRG-KGVRLQSY-KDGGISDVIC--FKICEGLTWIDSAGRSYNRSENDLLG 728
            ++ +   M R  +GVRL +  K   +   +C            + +   +N++  ++  
Sbjct: 784 LAVAECRVMGRATQGVRLINLAKKNDVIASVCKVMNAELEEELEEESRSKFNKTNEEIEN 843


>gi|77462241|ref|YP_351745.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides 2.4.1]
 gi|77386659|gb|ABA77844.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides 2.4.1]
          Length = 767

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/769 (50%), Positives = 523/769 (68%), Gaps = 27/769 (3%)

Query: 6   ISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++     E     +  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 1   MTDTPEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEAR+T +AEL+++G+ E+AVDFR  Y+    EPVV P+ FPNLLANG SGI
Sbjct: 121 DNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ E  LALI +P I+ + L+  I GPDFPTGG+IVE +E I+E+Y
Sbjct: 181 AVGMATNIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+RA+W  E++GRG+W IVVTEIPYQVQKS+LIE++AELI  K++P L D+RD
Sbjct: 241 RTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+DVRIVL P+ R++DP++LM  +F  SD+E RF LNMNVL  GR P+V  L  +L+ 
Sbjct: 301 ESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI-------------------- 403
           +L HRR VL RRS  RM+ ID R+E+L GL++A+LN+D +                    
Sbjct: 361 FLDHRRNVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWG 420

Query: 404 --IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                  +E            L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+  +
Sbjct: 421 RRFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADL 480

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           ++L+ S + QW++I  ++ E++++F K T  G RRT F E +   +    +AMIE+EPIT
Sbjct: 481 EALIGSERLQWDRIGHDLGEIRKLFGKWTVAGARRTQFAE-AGEVEEVPLEAMIEREPIT 539

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V+ S  GWIR++K H    +   FK+GD  +   HA TTDR+LL+ ++G+ YTL   +L 
Sbjct: 540 VICSQMGWIRAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLP 599

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG GE ++L++DL +  +I   FV+    KLL+ SS G+ F+V   E++A TR GK  
Sbjct: 600 GGRGMGEPVRLMVDLPNEAEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAV 659

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
           L +    +  +   V GDHVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I
Sbjct: 660 LSMKEGVRTAVCRPVRGDHVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAI 719

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            F+I  GL+W D AGR   R+E +L  W   R G G + P+GFPR  +F
Sbjct: 720 TFEIARGLSWKDPAGR--TRTETELAEWTAARAGAGKMAPRGFPRDNRF 766


>gi|153854250|ref|ZP_01995549.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814]
 gi|149753025|gb|EDM62956.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814]
          Length = 837

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/770 (31%), Positives = 405/770 (52%), Gaps = 37/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MEDN---IFDKVHEVDLKQTMETSYIDYAMSVIASRALPDVRDGLKPVQRRIMYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   ++++ VDF   ++E + EP V PS+FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMELTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E+  A + +ID+      E +IE++L+ I GPDFPTGG+I+     I 
Sbjct: 178 GMATNIPPHNLREVINAVVQIIDDQIEDKEETTIEEILKIIKGPDFPTGGMIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   I+V+E+PY V K+RLIEKIAEL+  K+I  + D
Sbjct: 237 EAYRTGRGKIRVRAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D+S+ +   V+    R  + ++++  ++  + ++  F + M  L  G  P+VM L  +
Sbjct: 297 LSDQSSREGMRVVIELRRDANANVILNQLYKHTQLQDTFGVIMLALV-GNEPKVMNLMEM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVM 417
           L  +L H+ EV+ RR+ + +   + R  ILKGLLIA  NIDE+I IIR     +     +
Sbjct: 356 LNYYLKHQEEVVTRRTQYELNKAEERAHILKGLLIALDNIDEVIKIIRGSQTVQIAKSEL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF LT+ Q  AI+++RLR+L  LE  ++++E   L+ + E + ++L   K     I  
Sbjct: 416 MERFGLTDVQSQAIVDMRLRALTGLEREKLEAEYKALMEQIEHLRAILADRKLLLGVIKE 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           EI  +++ +        RRT+       +     + +I +E + + ++  G+I+ +    
Sbjct: 476 EILVIRDKYGDE-----RRTSI---GFDEFDISMEDLIPREDVVITMTKLGYIKRMSHDT 527

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   + D ++     +T   ++  +  G+ Y + A  +        G
Sbjct: 528 FKAQNRGGKGIKGMQKLDEDYVEELFMTNTHHYLMFFTNTGRVYRMKAYEIPEASRTSRG 587

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            AI  L+ L   + I        Y+    LL+ + KG        E     + G   + +
Sbjct: 588 TAIVNLLQLMPGEKISAVIPIEKYNDDEYLLMATKKGLIKKTPIKEYANVRKTGLAAITL 647

Query: 645 SSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             E+++  V     DH V +V +  + + F+   +    R   GVR  +  D      + 
Sbjct: 648 REEDELIEVKYTDSDHDVFMVTKYGQCIRFNESDVRPTGRTSMGVRGMNLVDRDEVIGMQ 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +G   +  +     +  +        RGG G    K   ++G  + 
Sbjct: 708 I-DSQGTELLIVSEYGMGKRTSIDEFTAQNRGGKGVKCYKITEKTGNVVG 756



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 63/170 (37%), Gaps = 8/170 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L+A+  +E D L    +  +   + +++  G+       ++         ++ + +L  
Sbjct: 641 GLAAITLREEDELIEVKYTDSDHDVFMVTKYGQCIRFNESDVRPTGRTSMGVRGM-NLVD 699

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVV 654
             +++   +     +LL+VS  G        E  A  R GK      +   +   +  V 
Sbjct: 700 RDEVIGMQIDSQGTELLIVSEYGMGKRTSIDEFTAQNRGGKGVKCYKITEKTGN-VVGVK 758

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            V  D  + ++     ++    D I E+ R   GV+L +  +G     I 
Sbjct: 759 AVDEDNEIMIINTEGIIIRMKCDGISELGRVTSGVKLINLPEGDKVACIA 808



 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 43/424 (10%), Positives = 125/424 (29%), Gaps = 15/424 (3%)

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +R    V+           +T++  Q      +  +  L   K     + + ++     
Sbjct: 401 IIRGSQTVQIAKSELMERFGLTDVQSQAIVDMRLRALTGLEREKLEAEYKALMEQIEHLR 460

Query: 310 RIVLFPKN---RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            I+   K       +  L++   +      +      ++     +P+   +  + K    
Sbjct: 461 AILADRKLLLGVIKEEILVIRDKYGDERRTSIGFDEFDISMEDLIPREDVVITMTKLGYI 520

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R      ++  R     + ++ L    +  L +      +        V   +      
Sbjct: 521 KRMSHDTFKAQNRGGKGIKGMQKLDEDYVEELFMTNTHHYLMFFTNTGRVYRMKAYEIPE 580

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
                    + +L +L   +  S +  +    +    L+ + K    +   +        
Sbjct: 581 ASRTSRGTAIVNLLQLMPGEKISAVIPIEKYNDDEYLLMATKKGLIKKTPIKEYANVRKT 640

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             +    R      EV      +     +  +    +  N   +R     S+ +  ++  
Sbjct: 641 GLAAITLREEDELIEVK--YTDSDHDVFMVTKYGQCIRFNESDVRPTGRTSMGVRGMNLV 698

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           + D +           +L++S  G           +    G+ ++         ++V   
Sbjct: 699 DRDEVIGMQIDSQGTELLIVSEYGMGKRTSIDEFTAQNRGGKGVKCYKITEKTGNVVGVK 758

Query: 607 VYDSTCKLLVVSSKGNAFIVE---ESEIIANTRKGKTFLKVSSEEKMKLVVKV-----TG 658
             D   ++++++++G    ++    SE+   T  G   + +   +K+  + KV     + 
Sbjct: 759 AVDEDNEIMIINTEGIIIRMKCDGISELGRVT-SGVKLINLPEGDKVACIAKVRRGDESE 817

Query: 659 DHVA 662
           D + 
Sbjct: 818 DDLV 821


>gi|145218988|ref|YP_001129697.1| DNA gyrase subunit A [Prosthecochloris vibrioformis DSM 265]
 gi|145205152|gb|ABP36195.1| DNA gyrase subunit A [Chlorobium phaeovibrioides DSM 265]
          Length = 827

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 396/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + +  V++   +   YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G  
Sbjct: 1   MQRQRILPVTIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSAR+VGEV+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG++DGDS AA RY
Sbjct: 61  HKKSARVVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +L+ +D++ V++   +++   EP V PS  PNLL NG SGIAVGMAT+I
Sbjct: 121 TEVRMKAIAGEMLKDLDKETVEYSLNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P  N++E+ +   ALIDNP+I IE+L++++I PDFPTGG I+   E +  +Y  GRG   
Sbjct: 181 PPQNLREVVDGMTALIDNPDIEIEELMKHVIAPDFPTGG-IIYGYEGVRLAYTTGRGKVV 239

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  VE     G   IVVTE+PYQV K RLIEKI EL+  K++  + DIRDES  D  
Sbjct: 240 IRARALVEVTQKNGRESIVVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  + M+  F + M  L    VP+V+ L  +++ ++ HR E
Sbjct: 300 RLVIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVD-GVPRVLNLKEMMQFYIQHRNE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQ 427
           ++ RR+ + + A ++R  IL+GL I   N+DE+I  IR              RF L+E Q
Sbjct: 359 IVLRRTRYDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDANTAQARLIERFGLSELQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RL+ L  +E  +I  E    +A  E++  +L S ++Q   I  E+ +V+E++ 
Sbjct: 419 SKAILEMRLQRLTGMERKKIDLEYAETIALIEELRDILASPERQMQIIRTELLKVREVYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVD 539
                  RRT              + MI +E + + I++ G+I+                
Sbjct: 479 DE-----RRTEIVPQEGD---FSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           ++    K  D ++    A T + IL  +++G+ Y L    +        G ++  +++LN
Sbjct: 531 VTGAQAKNDDFIEHMFVASTHNYILFFTSNGRCYWLKVYEIPEAGRAARGRSLANIMELN 590

Query: 598 HNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I   +    +D    +++ ++ G        E     R G   + + + + +    
Sbjct: 591 PGETIKTYINIRNFDEPGFIMMATADGIVKKTALEEFSRPRRNGIAAITIDTGDALLDAR 650

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
              GDH V +   +  ++ F   Q+  M R   GV+  +   G     +          +
Sbjct: 651 LTDGDHQVILAKSSGLVVRFPESQVRPMGRTAMGVKGITLDRGEKCISMVTTKRLDTALL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +        L KRG  G +  K   + G  + 
Sbjct: 711 AVTDNGFGKRSKVEDYRLTKRGARGVITLKAHEKIGALVG 750



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 63/208 (30%), Gaps = 9/208 (4%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           M+      V  +        + +   ++A+    GD+L  A       +++L  + G   
Sbjct: 611 MMATADGIVKKTALEEFSRPRRN--GIAAITIDTGDALLDARLTDGDHQVILAKSSGLVV 668

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEII 632
             P   +         +   I L+  +  ++          LL V+  G     +  +  
Sbjct: 669 RFPESQVRPMGRTAMGV-KGITLDRGEKCISMVTTKRLDTALLAVTDNGFGKRSKVEDYR 727

Query: 633 ANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
              R  +  + + + EK+  +V        D + ++  +  +    +  I    R   GV
Sbjct: 728 LTKRGARGVITLKAHEKIGALVGLLDVNDDDDLIIITSHGIVNRQHVSDIRITGRNTSGV 787

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSA 715
           RL    +G     +              
Sbjct: 788 RLVRLMEGDAVSALARVPKTDEDTDTET 815


>gi|256060873|ref|ZP_05451033.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
 gi|261324871|ref|ZP_05964068.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
 gi|261300851|gb|EEY04348.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
          Length = 770

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/759 (59%), Positives = 587/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YK GG+ DV  F I +GL+W
Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKGGGVCDVRTFAIADGLSW 731

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|332702341|ref|ZP_08422429.1| DNA gyrase, A subunit [Desulfovibrio africanus str. Walvis Bay]
 gi|332552490|gb|EGJ49534.1| DNA gyrase, A subunit [Desulfovibrio africanus str. Walvis Bay]
          Length = 827

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/760 (33%), Positives = 400/760 (52%), Gaps = 33/760 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS++  +E+ YL Y+LS I  RAIPD+RDG KPVHRRI++AM E+G  +  A+KKSAR+V
Sbjct: 7   VSIKSEIEKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNSYNRAYKKSARVV 66

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQ F  R  ++ GQGNFG+IDGD+AAA RYTE RM+++
Sbjct: 67  GDVIGKYHPHGDQSVYDALVRMAQDFSMRDLVVDGQGNFGSIDGDAAAAMRYTEVRMSRL 126

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L  ++++ VDFR  Y+    EP V P+K PNLL NGTSGIAVGMAT+IP HN+ E+
Sbjct: 127 ASEFLADIEKETVDFRPNYDNSLQEPAVLPTKVPNLLLNGTSGIAVGMATNIPPHNLGEL 186

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+DNPE +   L  ++ GPDFPT       R  ++++Y  GRG  ++R    VE
Sbjct: 187 MDATLHLLDNPECTPRDLTAFVKGPDFPTAASCYGGR-GLMDAYETGRGSIKIRGTVAVE 245

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E   G   IV++EIP+ + KS L+EKIA LI  KRI  + D+RDES      ++    + 
Sbjct: 246 EKKGGRESIVISEIPFALNKSSLVEKIAALINDKRIDGVSDLRDESDRKGIRIVLDLKKG 305

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             PD+++  ++  + +E+ F +NM  +  G  P ++ L  IL  +L HRREV+ RR+ F 
Sbjct: 306 AIPDIIINMLYKFTPLESSFGINMMAVV-GSRPMLLNLKSILDYFLQHRREVILRRTRFD 364

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNLRL 436
           +   ++R  IL+GLLIA  NIDE++ IIR+          ++ RF L++ Q  AIL++RL
Sbjct: 365 LDKAEKRAHILEGLLIALDNIDEVVRIIRSSATALEAKSRLMERFGLSDVQSQAILDMRL 424

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE+ +++ E   LL + E + S+L + +     I  E+ EV+ IF+       R+
Sbjct: 425 QRLVNLEQEKLREEFAELLKKIEYLKSILTNEEVLKGVIREELSEVRRIFATP-----RK 479

Query: 497 TTFCEVSRADKATLQQAMIEK------EPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           T   E              E+          +  +     +  K     +S +   + D 
Sbjct: 480 TVILEQDLDSIDIEDLIADEEVVLTLSRRGYIKRTTLDSYQQQKRGGKGISGVLTGDDDF 539

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV- 607
           +           +LL +  G+ + L    +  G  + +   I  L+ L+ ++ + TA   
Sbjct: 540 VHTFCSTSNHQYLLLFTNRGRMHQLKVHQVPEGGRYAKGSHIANLLPLDKDEHVTTALTV 599

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664
             +      + V+ +G       S        G   + +  ++++ +V ++ G D + +V
Sbjct: 600 REFAEHNYFMFVTKRGMIKKTSASLYANVRSSGVRAVNLRDDDELIMVREINGRDELILV 659

Query: 665 GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL----------TWID 713
                 + F+  +I  + RG  GV+  + +             +              + 
Sbjct: 660 TAEGTSIRFTSAEIRPIGRGATGVKGIALRGSDEVVAGVVVRPDEEAVDASGEDRRLVLT 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + + Y +           RGG G +  K  P++G+ + +
Sbjct: 720 ISEKGYGKRTPVNQYRGQSRGGKGIINMKVTPKTGRVVGA 759



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 87/278 (31%), Gaps = 31/278 (11%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
               +Y +       + + +           + + IA  +   K+    +    R     
Sbjct: 546 TSNHQYLLLFTNRGRMHQLKVHQVPEGGRYAKGSHIANLLPLDKDEHVTTALTVREFAEH 605

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
                  K  + +         V  S              + A++ ++ D L +    + 
Sbjct: 606 NYFMFVTKRGMIKKTSASLYANVRSS-------------GVRAVNLRDDDELIMVREING 652

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------ 613
            D ++L++ +G +    +  +         +   I L  + ++V   V     +      
Sbjct: 653 RDELILVTAEGTSIRFTSAEIRPIGRGATGV-KGIALRGSDEVVAGVVVRPDEEAVDASG 711

Query: 614 -----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKV--TGDHVAV 663
                +L +S KG       ++    +R GK  + +       ++   V    + + V +
Sbjct: 712 EDRRLVLTISEKGYGKRTPVNQYRGQSRGGKGIINMKVTPKTGRVVGAVVTYESKEEVIL 771

Query: 664 VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDV 700
           +    K++  S + I  + R  +GVRL   ++      
Sbjct: 772 LTSGNKVIRLSSEDISVIGRATQGVRLVRMEEEDRVAA 809


>gi|320546782|ref|ZP_08041093.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           equinus ATCC 9812]
 gi|320448661|gb|EFW89393.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           equinus ATCC 9812]
          Length = 809

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/753 (30%), Positives = 402/753 (53%), Gaps = 15/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGA-LVMGKSGIRKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +     VP+++ L  I+ +++ H++EV
Sbjct: 300 FIIEVRRDASANVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLKQIIIDYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     ++R  IL+GLLIA  ++D++I+IIRN +     +  ++SRF+L+E Q 
Sbjct: 359 IVRRTEFDKAKAEKRAHILEGLLIALDHLDDVISIIRNSETDVIAQSELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E D+LLA    +  +L    +    I  E+ E+K  +  
Sbjct: 419 QAILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPDRVITIIKEEMDEIKRKYVD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
                        +   D    +  +I       +    +   R+ +     +      +
Sbjct: 479 PRRTELMVGEVLSIEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQRRGGRGVQGTGVND 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +  +T D +  ++  G+ Y L    +       +   I  L+ L+  + + T 
Sbjct: 539 DDFVRELVSTNTHDHVYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETVQTI 598

Query: 606 FVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
                  ++   L  V+ +G     +ESE     + G   L +   +++  V++  GD  
Sbjct: 599 ISEKGNDETENYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKESDELINVIRTNGDDD 658

Query: 662 AVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            ++  +    + F+   +  MSR   GVR  + ++G    V   +I      +    + Y
Sbjct: 659 IIIGTKTGYSVRFNESSVRSMSRSATGVRGVNLREGDEV-VGASRITNDQEVLVITEKGY 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +           RGG G        ++GK   
Sbjct: 718 GKRTLASEYPTKGRGGKGIKTVNITKKNGKLAG 750



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 12/222 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E         ++   E E     ++ +G ++  K           L AL+ KE D L 
Sbjct: 589 LDEGETVQTIISEKGNDETENYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKESDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             +  +  D I++ +  G +      ++ S       ++  ++L    ++V A    +  
Sbjct: 649 NVIRTNGDDDIIIGTKTGYSVRFNESSVRSMSRSATGVRG-VNLREGDEVVGASRITNDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE     R GK    V       K+  +V V GD  + V+ +  
Sbjct: 708 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTVNITKKNGKLAGLVTVNGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
            ++  ++  I +  R   GV++    +      +     E  
Sbjct: 768 VMIRTNVADISQTGRATLGVKIMRLDENAKIMTLALVQAEEE 809


>gi|326789145|ref|YP_004306966.1| DNA gyrase subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326539909|gb|ADZ81768.1| DNA gyrase, A subunit [Clostridium lentocellum DSM 5427]
          Length = 844

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/768 (33%), Positives = 402/768 (52%), Gaps = 29/768 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           ++N +  + +    +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++MSE+GL 
Sbjct: 2   DTNDVTYDRIIHRDINDEMQNCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMSELGLG 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               ++KSARIVG+ +GK HPHGD S+Y ++VR+AQ F  RYPL+ GQGNFG+IDGDS A
Sbjct: 62  SDKQYRKSARIVGDTMGKYHPHGDSSIYGAMVRMAQEFSTRYPLVDGQGNFGSIDGDSPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++  L+L  +D+D V+FR  ++E   EP V PS+FPNLL NG+SGIAVGM
Sbjct: 122 AMRYTEARMSKMTALMLADIDKDTVEFRPNFDESSKEPCVLPSRFPNLLVNGSSGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALAL----------IDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           AT+IP HN+ E+    + +           +  E  IE+L+  I GPDFPTG  I   R 
Sbjct: 182 ATNIPPHNLTEVVNGVIRMIDNYMGENEEHEVRETEIEELMAIIEGPDFPTGATIY-GRY 240

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++YR GRG  +V+A+  +E +  G   IVVTEIPY V KS LIEK+A+L+  ++I  
Sbjct: 241 GIDQAYRTGRGKVKVKAKAEIEAMQGGKNRIVVTEIPYMVNKSSLIEKMADLVKERKIDG 300

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + DIRDES  +   ++    R ++P +++  ++  + ++  F +NM  L   + P+V+ L
Sbjct: 301 ITDIRDESDRNGISMVIELRRDVNPTVILNQLYKYTQLQDTFSINMLALVDDK-PKVLNL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL+E+L H++EV+ RR+ F +   + R  IL+GL  A  NID ++++IR     +   
Sbjct: 360 KQILEEYLKHQKEVVTRRTQFELNKAEARAHILEGLRKALDNIDLVVSLIRESANVQEAK 419

Query: 418 VSRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                   LTE Q  AI+ +RLR+L  LE  +I  E   LL + E + S+L S  +  + 
Sbjct: 420 DKLMEAIELTEIQAQAIVEMRLRALTGLEREKIDQEYAELLEKIEYLKSILASEYKLLSV 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR---GWIR 531
           I  EI EVK+ +       R   T  E     +  + +  I      +    R      +
Sbjct: 480 IKDEITEVKQKYGD---GRRTDITIDEDEYDIEDLIDEENIVVTITQLGYIKRIPLDTYK 536

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEA 589
           +       +  ++  E D +K        + I+  +  GKAY +    +        G A
Sbjct: 537 NQNRGGKGIIGVNTIEDDFIKQLFVTTNFNYIMFFTNKGKAYRIKGYRIPEAGRTARGTA 596

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  L++L+ ++ I   F    ++    L +V+ KG        +     + G   L ++ 
Sbjct: 597 IVNLLELDKDEKITAVFPIKEFEDNTFLTMVTKKGQIKKTPLKDFRNIRKGGLIALSLNE 656

Query: 647 EEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           E+++  V + T    + V   N + ++F    +  M R  +GVR  +  +          
Sbjct: 657 EDELVDVHQTTSKDAILVATRNGQGIMFDATDVRPMGRTARGVRAINLGETDEVIGATV- 715

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             EG   + +  +   +          KRGG G  + K   ++G  + 
Sbjct: 716 PKEGEQILTTTEKGLGKRTQIEAFRAQKRGGKGLRINKITEKTGCIIG 763



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 8/178 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L AL   E D L       + D IL+ + +G+     A ++         ++  I+L  
Sbjct: 648 GLIALSLNEEDELVDVHQTTSKDAILVATRNGQGIMFDATDVRPMGRTARGVR-AINLGE 706

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVV 654
             +++ A V     ++L  + KG     +     A  R GK      +   +   + +  
Sbjct: 707 TDEVIGATVPKEGEQILTTTEKGLGKRTQIEAFRAQKRGGKGLRINKITEKTGCIIGVAS 766

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
               D + ++     ++   + QI  + R  +GV+L +  D     V+C +       
Sbjct: 767 VSEEDELLLITSQGIIIRIKVAQISSIGRNAQGVKLINVADD--VQVVCMEKVNEEFI 822


>gi|114704845|ref|ZP_01437753.1| DNA topoisomerase IV subunit A [Fulvimarina pelagi HTCC2506]
 gi|114539630|gb|EAU42750.1| DNA topoisomerase IV subunit A [Fulvimarina pelagi HTCC2506]
          Length = 750

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/738 (57%), Positives = 563/738 (76%), Gaps = 1/738 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V LR ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + LD G A+KK 
Sbjct: 13  EIQPVDLREALEERYLAYALSTIMGRALPDVRDGLKPVHRRIVHAMRVLRLDPGQAYKKC 72

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+G+ HPHGD ++YD+LVRLAQ F  RYPL+ GQGNFGN+DGDSAAA RYTEAR
Sbjct: 73  ARIVGDVMGRFHPHGDAAIYDALVRLAQDFSVRYPLVDGQGNFGNVDGDSAAAMRYTEAR 132

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+VA L+L+G+DE+AVDFR TYNEED EPVV P  FPNLLANG+SGIAVGMAT+IP HN
Sbjct: 133 MTEVATLLLRGIDENAVDFRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATNIPPHN 192

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL +I+NP+ ++++LL  I GPDFPTGG+IV++R +I ++Y  GRG FRVRAR
Sbjct: 193 AAELCDAALKIIENPDATVDQLLRSIEGPDFPTGGVIVDNRATIRQAYETGRGSFRVRAR 252

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E+  RG W +VV EIPYQVQKSRLIEKIAEL+ A+++PLL DIRDESAED+RIVL P
Sbjct: 253 WEREDATRGQWFVVVHEIPYQVQKSRLIEKIAELLQARKLPLLADIRDESAEDIRIVLEP 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K++++DP++LMES+F L+D+E+R PLNMNVLS G+VP+V+ L  +L EWLAH+REVL RR
Sbjct: 313 KSKTVDPEILMESLFRLTDLESRIPLNMNVLSGGKVPKVLSLKEVLAEWLAHQREVLERR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           +  R+  I+RR+EIL G LI +LNID++I IIR ED+PK  ++  F+L++ Q +A+LN+R
Sbjct: 373 ARHRLAQIERRLEILAGYLIVFLNIDDVIRIIREEDEPKQELMRFFTLSDVQAEAVLNMR 432

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE++++ E D L  EK + ++LL S ++QW+ +A E+R V+E FSK T LG+R
Sbjct: 433 LRSLRKLEEFELRREFDQLTVEKAEKEALLGSTEKQWSAVAEEVRAVRETFSKKTKLGKR 492

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +    D   +  A+IEKE +T+V+S +G++R +K H  D S L F+EGD L IA 
Sbjct: 493 RTRFADAPDHDIGDITTALIEKESVTIVLSKKGFLRGMKGHLADFSNLTFREGDGLNIAF 552

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA TTD++L +S  G+ +T+ A  L  GRG G+ I+L  DL    DI  AF  +   + L
Sbjct: 553 HAMTTDKLLFVSKHGRVFTMQADKLPGGRGQGDPIRLAFDLEDKDDIAAAFTAEPERRRL 612

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS 674
           +VSS+G  F+  E ++I+ TRKGK  + V     ++L  ++  GD VA+VGENRKLL+F 
Sbjct: 613 MVSSEGTGFVATEGDMISGTRKGKQLMNVGKGSVVELAQEIGEGDTVAIVGENRKLLVFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + Q+P+M+RGKGVRLQ YKDGG+SD   FK+ EGLTW DSAGR++ RS+ +L+ W G R 
Sbjct: 673 LSQVPQMARGKGVRLQRYKDGGVSDAKVFKLSEGLTWSDSAGRAFLRSDEELMEWKGDRA 732

Query: 735 GVGSLVPKGFPRSGKFLS 752
             G LVPKGFP++ KF  
Sbjct: 733 QAGRLVPKGFPKTNKFAG 750


>gi|189465631|ref|ZP_03014416.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM
           17393]
 gi|189437905|gb|EDV06890.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM
           17393]
          Length = 856

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/758 (30%), Positives = 394/758 (51%), Gaps = 21/758 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY ++ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMVVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD ++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A I+N +I IE+L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  + E       IV+TEIPY V K+ LI+ IA+L   K+I  + +  DES  +   
Sbjct: 241 MRARAEI-ETSSTHDKIVITEIPYGVNKAELIKNIADLANDKKIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR EV
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTLLQTSFSVNNVALVH-GRPRLLNLKDMIKYFVEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF LTE Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLMERFQLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++      + +L++ +     I  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKLIAYYEEILSNDELCRKVITDELIEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  +  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGSKGTDTRDA 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  +L  +  G        +     + G   + +  ++++  V    G
Sbjct: 599 RVKNLSDTDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNG 658

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
           D  + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  T + 
Sbjct: 659 DNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPEAETIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +  +        RGG G        ++GK +
Sbjct: 719 VSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLV 756


>gi|330502868|ref|YP_004379737.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01]
 gi|328917154|gb|AEB57985.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01]
          Length = 922

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/841 (31%), Positives = 416/841 (49%), Gaps = 112/841 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LAL+DN E+++++L++YI GPDFPT G I+  R  I+E+YR GRG   V
Sbjct: 184 PHNLTEVIDGCLALMDNAELTVDELMQYIPGPDFPTAG-IINGRAGIIEAYRTGRGRIYV 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   +VVTE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 243 RARVEVEDIDKVGGRQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + M++ F +N+  L     P+ M L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQMQSVFGINVVALVD-GQPKTMNLKDMLEVFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ + ++    R  IL+G  +A  NID +I +I++   P                 
Sbjct: 362 VVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWASSAV 421

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++  E   
Sbjct: 422 EAMVERAGADSCRPEGLDAQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +LA   ++  +L + ++    I  E+ +VK  F  +     RRT       + +      
Sbjct: 482 ILALIGELIRILTNPERLMEVIREELEKVKAEFGDA-----RRTEII---ASRQDLTIAD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+          + +      SA   K+ D ++  L A++   +LL
Sbjct: 534 LITEEERVVTISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD-------------- 609
            S+ GK Y L    +        G  +  L+ L+  + I      D              
Sbjct: 594 FSSKGKVYWLRTFEIPEASRAARGRPLVNLLPLDEGERITAMLQIDLEALQQSAGADEDL 653

Query: 610 ----------------------------------STCKLLVVSSKGNAFIVEESEIIANT 635
                                             +   + + ++ G        +     
Sbjct: 654 DDEGVVIEGEATEVVEAEEVEEVEGETPELVAEPTGAFIFMATAFGTVKKTPLVQFSRPR 713

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
             G   LK+   + +       G   V +  +  K+L F+  ++  M R  +GVR     
Sbjct: 714 SAGLIALKLEEGDTLIAAAITDGAKEVMLFSDAGKVLRFAESKVRTMGRTARGVRGMRL- 772

Query: 694 DGGISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            G    +I   I E G   + ++ R + +           RGG G +      R+GK + 
Sbjct: 773 -GKDQQLISMLIPESGAQILTASERGFGKRTGLGKFPRRGRGGQGVIAMVTSERNGKLVG 831

Query: 753 S 753
           +
Sbjct: 832 A 832


>gi|322387956|ref|ZP_08061563.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           infantis ATCC 700779]
 gi|321141229|gb|EFX36727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           infantis ATCC 700779]
          Length = 822

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 400/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKMTQMQTSFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +  +      +S+F L+E Q 
Sbjct: 359 VTRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDQEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  +  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKYED 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +         + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----KRRTEL--MVGEVLTLEDEDLIEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        +   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINIESERSDDAYIFFTTRAGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GV+  + ++G  + V    I +    +
Sbjct: 652 LTQEDTDIIIGTKLGYAVRFNQSSVRSMSRSATGVKGVNLREGD-AVVGARVITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           R G G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRAGKGMKTANITDKNGHLAG 750


>gi|195978144|ref|YP_002123388.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974849|gb|ACG62375.1| DNA gyrase subunit A GyrA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 831

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/753 (30%), Positives = 390/753 (51%), Gaps = 15/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++++  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E + GPDFPTG  +V  R  I ++Y  G+G   
Sbjct: 181 PPHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGA-LVMGRSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY + K+++ E I  L    RI  +  +RDES+     
Sbjct: 240 LRSRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQENRIEGITAVRDESSRQGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +   G +P+++ L  I+  ++ H+++V
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSF-NMLAIEGGIPKILSLRQIIDNYILHQKDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 ITRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERIEAIIKEEMEEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                        +   D    +  +I       +    +   RS K     +      +
Sbjct: 479 PRRTELMVGEVLSLEDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQGTGVND 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +L  +  G+ Y L A  +       +   +  L+ L+  + I T 
Sbjct: 539 DDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLKLDDGETIQTI 598

Query: 606 FVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                           + +G     E SE     + G   L +   +++  V+   G + 
Sbjct: 599 INAKKEDILDKYFFFTTKQGIVKRTEVSEFSNIRQNGLRALNLKEGDELINVLLTNGQED 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +   +   + F+   I  M R   GVR    ++     V   +I +    +      Y
Sbjct: 659 IIIGTRSGYSVRFNEATIRGMGRSATGVRGVKLREEDWV-VGASRINDKQEVLVITENGY 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +        RGG G        ++G+   
Sbjct: 718 GKRTSAAEYPTKGRGGKGIKTANITAKNGQLAG 750



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 7/121 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           + L     +V A   +   ++LV++  G       +E     R GK      +   +  +
Sbjct: 689 VKLREEDWVVGASRINDKQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKNG-Q 747

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  ++ V G + + V+     ++  ++  I +  R   GV++                 E
Sbjct: 748 LAGLMTVDGNEDIVVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVTFTLVQAE 807

Query: 708 G 708
            
Sbjct: 808 D 808


>gi|94990497|ref|YP_598597.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270]
 gi|94544005|gb|ABF34053.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270]
          Length = 828

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/753 (31%), Positives = 391/753 (51%), Gaps = 15/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHLLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ ++T F     +     VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRREASATVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 IIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
                        +   D    +  +I       +    +   R+ K     +       
Sbjct: 479 PRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNN 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L   + I T 
Sbjct: 539 DDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTI 598

Query: 606 FVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                           + +G     E SE     + G   LK+   +++  V+  +G D 
Sbjct: 599 INARKEETAGKSFFFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDD 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +   +   + F+   I  M R   GVR    ++     V   +I +    +      +
Sbjct: 659 IIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDDRV-VGASRIQDNQEVLVITENGF 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +        RGG G       P++G+   
Sbjct: 718 GKRTSATDYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           + L  +  +V A       ++LV++  G       ++     R GK      +   +  +
Sbjct: 689 VKLREDDRVVGASRIQDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKNG-Q 747

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  +V V G + + V+     ++  ++  I +  R   GV++                 E
Sbjct: 748 LAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPE 807

Query: 708 GLTW 711
             + 
Sbjct: 808 DSSI 811


>gi|312129654|ref|YP_003996994.1| DNA gyrase subunit a [Leadbetterella byssophila DSM 17132]
 gi|311906200|gb|ADQ16641.1| DNA gyrase subunit A [Leadbetterella byssophila DSM 17132]
          Length = 837

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/761 (30%), Positives = 394/761 (51%), Gaps = 17/761 (2%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +N N     ++  +++   +   Y+ Y++S I  RA+PD+RDGFKPVHRR++  MSE+G+
Sbjct: 4   NNENAEWGGSIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGMSELGV 63

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                +KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RYPL+ GQGNFG++DGDS 
Sbjct: 64  YHNRPYKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSVDGDSP 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+ ++AE +L  ++++ VDFR  +++   EP V PS+ PNLL NGTSGIAVG
Sbjct: 124 AAMRYTEARLRRIAEEMLADINKETVDFRGNFDDSLQEPTVLPSRIPNLLLNGTSGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++  HN+ E+ E   A IDNPEI+IE+L+ +I  PDFPTGGII      +  ++  G
Sbjct: 184 MATNMAPHNLSEVTEGITAYIDNPEITIEELMHFIKAPDFPTGGIIYG-YGGVKAAFETG 242

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +R+    E    G   IVVTEIPY V K+ +IEK AEL+  K+I  +  IRDES 
Sbjct: 243 RGRVVIRSVANFEVSKTGKEQIVVTEIPYLVNKAAMIEKTAELVNDKKIEGISGIRDESD 302

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                +++   +   P++++ +++  + ++T F +N   L     P+ + L  +++ ++ 
Sbjct: 303 RQGLRIVYDLKKDAVPNVVLNNLYKYTQLQTSFSINNVALVH-GKPETLNLKQLIEHYVK 361

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSL 423
           HR +V+ RR+ + ++  ++R  IL+GLLIA  ++DE+I++IR+   P       + +F+L
Sbjct: 362 HRLDVITRRTQYDLREAEKRAHILEGLLIALDHLDEVISLIRSSKDPDEARNGLMEKFAL 421

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL++RL+ L  LE  +I  E   + A  E+++++L S +++ + I  ++ ++K
Sbjct: 422 SEIQARAILDMRLQRLTGLERDKITEEYKQIKALIEELNAILASEEKKKDLIKADLLDIK 481

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
             +                        +  +       +  +N    +S          +
Sbjct: 482 TKYGDERRSKIEMVGGEFNIEDMIPDDEMLVTVTSQGYIKRTNLSEYKSQSRGGTGSRGV 541

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             K+ D  +    A   + +L  +  G+ Y L    +  G    +  AIQ LI++  +  
Sbjct: 542 KTKDDDYTEHLFMATNHNYLLFFTEKGRLYWLRVFEVPEGNKTSKGRAIQNLINIESDDK 601

Query: 602 IVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I             Y     +++ +  G              + G   + ++  +++  V
Sbjct: 602 IRAVLNVKTLSDEDYIKNNYIVMCTQNGIVKKTLLEMYSRPRQNGIIAININEGDQLIDV 661

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
               G D++ +     K + F    I  M RG  GV+  S  +   +  +          
Sbjct: 662 ALTNGNDYIIIAAGQGKAVRFHESGIRPMGRGATGVKGISLAEDDKAIGMICVNRPDAQL 721

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  + + Y +  +     +  RG  G        + G  ++
Sbjct: 722 LVVSEKGYGKRSDIEDYRITSRGAKGVKTLNMSEKVGNLVA 762



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 78/228 (34%), Gaps = 6/228 (2%)

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           R ++ + +  +D   R     +    +       ++      +V      + S    +  
Sbjct: 588 RAIQNLINIESDDKIRAVLNVKTLSDEDYIKNNYIVMCTQNGIVKKTLLEMYSRPRQN-G 646

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           + A++  EGD L      +  D I++ +  GKA       +         ++ +     +
Sbjct: 647 IIAININEGDQLIDVALTNGNDYIIIAAGQGKAVRFHESGIRPMGRGATGVKGISLAEDD 706

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----K 655
           + I    V     +LLVVS KG     +  +    +R  K    ++  EK+  +V     
Sbjct: 707 KAIGMICVNRPDAQLLVVSEKGYGKRSDIEDYRITSRGAKGVKTLNMSEKVGNLVAIKEV 766

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              D + ++      +   +  +  M R  +GVRL    D      I 
Sbjct: 767 TDEDDLMIITTRGIAIRMHVSDLRVMGRNTQGVRLIKLNDKDGIASIT 814


>gi|21910346|ref|NP_664614.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315]
 gi|28895921|ref|NP_802271.1| DNA gyrase subunit A [Streptococcus pyogenes SSI-1]
 gi|71903513|ref|YP_280316.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180]
 gi|73919726|sp|Q8K7H2|GYRA_STRP3 RecName: Full=DNA gyrase subunit A
 gi|21904542|gb|AAM79417.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315]
 gi|28811171|dbj|BAC64104.1| putative DNA gyrase A subunit [Streptococcus pyogenes SSI-1]
 gi|71802608|gb|AAX71961.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180]
          Length = 828

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/753 (31%), Positives = 391/753 (51%), Gaps = 15/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ ++T F     +     VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRREASATVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 IIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
                        +   D    +  +I       +    +   R+ K     +       
Sbjct: 479 PRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNN 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L   + I T 
Sbjct: 539 DDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTI 598

Query: 606 FVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                           + +G     E SE     + G   LK+   +++  V+  +G D 
Sbjct: 599 INARKEETAGKSFFFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDD 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +   +   + F+   I  M R   GVR    ++     V   +I +    +      +
Sbjct: 659 IIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDDRV-VGASRIQDNQEVLVITENGF 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +        RGG G       P++G+   
Sbjct: 718 GKRTSATDYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           + L  +  +V A       ++LV++  G       ++     R GK      +   +  +
Sbjct: 689 VKLREDDRVVGASRIQDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKNG-Q 747

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  +V V G + + V+     ++  ++  I +  R   GV++                 E
Sbjct: 748 LAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPE 807

Query: 708 GLTW 711
             + 
Sbjct: 808 DSSI 811


>gi|325685101|gb|EGD27232.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 823

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/765 (29%), Positives = 396/765 (51%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+ 
Sbjct: 1   MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELA 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGG I+  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGG-ILMGRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M++ F +NM  +     P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVD-GAPKSLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN +        ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------K 534
           ++ F       +RRT     +        + +IE++ + + +S++G+++ +         
Sbjct: 479 QKRFGD-----KRRTQIT--ASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +  ++GD ++  L++ T D +   +  GK Y   A  +       +   I  
Sbjct: 532 RGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L+  + I T               ++  G     +  E       G   L +   ++
Sbjct: 592 LLQLDKGEHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDE 651

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       + F+ D +  M R   GVR  + ++G           E
Sbjct: 652 LSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMGRSAAGVRGINLREGDYVVGSGILKPE 711

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G    K   ++G    
Sbjct: 712 DE-VLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAG 755



 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 6/192 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  K+GD L   L       IL+ +  G A T    ++ +
Sbjct: 624 TVKRTKIREFENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRA 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 A    I+L     +V + +     ++L +S KG       SE     R GK   
Sbjct: 684 MGRSA-AGVRGINLREGDYVVGSGILKPEDEVLTISEKGYGKRTAASEYPVKGRGGKGIQ 742

Query: 643 KVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
                EK   +  V  V G   + ++  +  ++ F    + +  R   GVRL    DG  
Sbjct: 743 TAKIGEKNGPLAGVAVVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNA 802

Query: 698 SDVICFKICEGL 709
              +     E  
Sbjct: 803 VASMAVVPAEAE 814


>gi|225570330|ref|ZP_03779355.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM
           15053]
 gi|225160862|gb|EEG73481.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM
           15053]
          Length = 833

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/770 (31%), Positives = 399/770 (51%), Gaps = 37/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MEDN---IFDKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   +++D VDF   ++E + EPVV P++FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMELTADINKDTVDFIPNFDETEKEPVVLPARFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN+ E+  A + +ID+      E +IE +L+ I GPDFPTGG+I+     I 
Sbjct: 178 GMATNIPPHNLAEVINAVVKIIDDQIEENEETTIEDILKIIKGPDFPTGGMIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   I+V+E+PY V K+RLIEKIAEL+  K+I  + D
Sbjct: 237 EAYRTGRGKVRVRAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D+S  +   V     R  + ++++  ++  + ++  F + M  L     P+VM L  +
Sbjct: 297 LSDQSNREGMRVCIELRRDANANVILNQLYKHTQLQDTFGVIMLSLI-NNEPRVMNLLDM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           L  +L H+ EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR  D  +      
Sbjct: 356 LNYYLEHQEEVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRGSDNVQAAKAEL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF L++ Q  AI+++RLR+L  LE  ++++E   L+ +  ++ ++L   K     I  
Sbjct: 416 MERFGLSDVQSQAIVDMRLRALTGLEREKLENEYKELMEKIGELKAILADRKLLLGVIKE 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           EI  +++ +        RRT+       +     + +I ++ + + ++  G+I+ +    
Sbjct: 476 EIIIIRDKYGDE-----RRTSI---GFDEFDISMEDLIPRQDVVITMTKLGYIKRMSNDT 527

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   E D ++     +T   I+  +  G+ Y L A  +        G
Sbjct: 528 FKAQHRGGKGIKGMQTLEEDYVEELFMTNTHHYIMFFTNTGRVYRLKAYEIPEASRTSRG 587

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            AI  L+ L   + I        Y     L + + KG       ++     + G   + +
Sbjct: 588 TAIINLLQLMPEEKITAVIPIEEYKEGEYLFMSTKKGLVKKTPITDYANVRKTGLAAITL 647

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             E+++  V     +  + ++ +  + + F+   +    R   GVR  +  D      + 
Sbjct: 648 REEDELIEVKYTNNERDIILITKYGQCIRFNERDVRSTGRTSMGVRGMNLADRDEVIGMQ 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +G   +  + +   +           RGG G    K   ++G  + 
Sbjct: 708 L-DSQGTHLLIVSEKGMGKRTGMDEFTSQNRGGKGVKCYKITEKTGNVVG 756



 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 82/270 (30%), Gaps = 21/270 (7%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +     Y +       +   +  +    S   +   I   ++ +        +       
Sbjct: 554 MTNTHHYIMFFTNTGRVYRLKAYEIPEASRTSRGTAIINLLQLM------PEEKITAVIP 607

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
             E    +   +       +   +                 L+A+  +E D L    + +
Sbjct: 608 IEEYKEGEYLFMSTKKGLVKKTPITDYANVRKT-------GLAAITLREEDELIEVKYTN 660

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               I+L++  G+       ++ S       ++ + +L    +++   +      LL+VS
Sbjct: 661 NERDIILITKYGQCIRFNERDVRSTGRTSMGVRGM-NLADRDEVIGMQLDSQGTHLLIVS 719

Query: 619 SKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIF 673
            KG        E  +  R GK      +   +   +  V  V   D + ++     ++  
Sbjct: 720 EKGMGKRTGMDEFTSQNRGGKGVKCYKITEKTGN-VVGVKAVDLDDEIMIINTGGIIIRM 778

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             D I  + R   GV+L +  DG     I 
Sbjct: 779 KCDNISSLGRVTSGVKLINLPDGETVASIA 808


>gi|15675129|ref|NP_269303.1| DNA gyrase subunit A [Streptococcus pyogenes M1 GAS]
 gi|71910687|ref|YP_282237.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005]
 gi|18203224|sp|Q9L7Q5|GYRA_STRP1 RecName: Full=DNA gyrase subunit A
 gi|7532887|gb|AAF63266.1| DNA gyrase A subunit [Streptococcus pyogenes]
 gi|13622289|gb|AAK34024.1| DNA gyrase A subunit [Streptococcus pyogenes M1 GAS]
 gi|71853469|gb|AAZ51492.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005]
          Length = 828

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/753 (31%), Positives = 391/753 (51%), Gaps = 15/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ ++T F     +     VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRREASATVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 IIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
                        +   D    +  +I       +    +   R+ K     +       
Sbjct: 479 PRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNN 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L   + I T 
Sbjct: 539 DDFVRELISTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTI 598

Query: 606 FVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                           + +G     E SE     + G   LK+   +++  V+  +G D 
Sbjct: 599 INARKEETAGKSFFFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDD 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +   +   + F+   I  M R   GVR    ++     V   +I +    +      +
Sbjct: 659 IIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDDRV-VGASRIQDNQEVLVITENGF 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +        RGG G       P++G+   
Sbjct: 718 GKRTSATDYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           + L  +  +V A       ++LV++  G       ++     R GK      +   +  +
Sbjct: 689 VKLREDDRVVGASRIQDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKNG-Q 747

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  +V V G + + V+     ++  ++  I +  R   GV++                 E
Sbjct: 748 LAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPE 807

Query: 708 GLTW 711
             + 
Sbjct: 808 DSSI 811


>gi|254427390|ref|ZP_05041097.1| DNA gyrase, A subunit [Alcanivorax sp. DG881]
 gi|196193559|gb|EDX88518.1| DNA gyrase, A subunit [Alcanivorax sp. DG881]
          Length = 935

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/840 (31%), Positives = 413/840 (49%), Gaps = 108/840 (12%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +   V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TDLAREVTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA R
Sbjct: 62  AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKIAHELLADLDKETVDFVDNYDGTEKIPDVMPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALID+  ++ + L+EYI GPDFPT G I+  R  IV++YR GRG  
Sbjct: 182 IPPHNLGEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAG-IINGRAGIVQAYRTGRGRV 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  +E     G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES ++ 
Sbjct: 241 YMRARAEIEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R  + ++++ +++  + ME+ F +N   L     P+++ L  +L  ++ HRR
Sbjct: 301 MRVVIELRRGENAEVVLNNLYQQTQMESVFGINTVALVD-GQPKILNLRELLDAFIRHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------- 419
           EV+ RR+ F ++    +  +L+GL +A  NID +I +I+                     
Sbjct: 360 EVVTRRTVFELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGD 419

Query: 420 ----------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L+  Q  AIL+LRL+ L  LE  ++ ++ 
Sbjct: 420 VLQMLERAGGENAARPDGLDEQYGLVDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             LL +  ++  +L + ++    I  E++ V+E ++       RR+       + +    
Sbjct: 480 QELLEQIAELLKILGNPERLMEVIREELQAVREEYADE-----RRSEIV---ASRQDFSM 531

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +SN G+ +     +           SA   K+ D ++  L A T D +
Sbjct: 532 EDLIAEETVVVTLSNGGYAKMQPIDTYRAQKRGGRGKSAGQLKDEDYVEHLLVAGTHDTL 591

Query: 564 LLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID-LNHNQDIVTAFVYDSTC-------- 612
           LL +  GK + L    L        G+ I  L+  L + + I      D+          
Sbjct: 592 LLFTDAGKVFWLRTFELPQGGRASRGKPIVNLLPALGNEERITAILRLDAEMVRQQKAGG 651

Query: 613 -------------------------------------KLLVVSSKGNAFIVEESEIIANT 635
                                                 + + +S G       +      
Sbjct: 652 EEEEIVDADDVIDAVDDEADSEVEGDVETVAETVPGPFIFMATSSGIVKRTALANFARPR 711

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
             G   +K+   E +  V    G + + +V  N K + F   ++  MSR  +GVR     
Sbjct: 712 SSGLIAVKLQEGEHLVNVAITQGHEDIMLVARNGKAVRFHQSKVRVMSRLARGVRGIKLA 771

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +G +  +      E    + ++   Y +           RGG G +      R+G+ + +
Sbjct: 772 EG-VDLISLIVPEENGQILTASEHGYGKRTPLTDYPTKGRGGQGVIAMVINERNGELVGA 830



 Score = 81.4 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 66/168 (39%), Gaps = 6/168 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S  L A+  +EG+ L         + I+L++ +GKA       +         ++  
Sbjct: 709 RPRSSGLIAVKLQEGEHLVNVAITQGHEDIMLVARNGKAVRFHQSKVRVMSRLARGVRG- 767

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKM 650
           I L    D+++  V +   ++L  S  G       ++     R   G   + ++    ++
Sbjct: 768 IKLAEGVDLISLIVPEENGQILTASEHGYGKRTPLTDYPTKGRGGQGVIAMVINERNGEL 827

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
               +V G + + ++     L+   ++Q+    R  +GVRL    DG 
Sbjct: 828 VGATQVFGEEDIMLISNQGTLVRTGVNQVSTSGRNTQGVRLIRLADGE 875


>gi|295134436|ref|YP_003585112.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87]
 gi|294982451|gb|ADF52916.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87]
          Length = 846

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/754 (30%), Positives = 397/754 (52%), Gaps = 19/754 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+    ++KK
Sbjct: 5   EKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRSYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSMRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++  +EPVV P++ PNLL NG SGIAVGMAT++  H
Sbjct: 125 RMRKISEDMLADIDKETVDTQLNFDDSLNEPVVMPTRIPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A ID+ +I I++L+++I  PDFPTGG I+   + + E+++ GRG   +RA
Sbjct: 185 NLSEVIDGTVAYIDDHDIEIDELMQHIKAPDFPTGG-IIYGYDGVREAFKTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV  G  CI+VTEIPYQV K+ +I+K A+LI  K+I  +  IRDES      +++
Sbjct: 244 KSSLEEVN-GKECIIVTEIPYQVNKADMIKKTADLINDKKIEGISLIRDESDRHGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  + +++ F +N   L     P+++ L  I+  ++ HR EV+ R
Sbjct: 303 QLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVK-GRPEMLNLKDIIYHFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IA+IR+ +  +        RF L+E Q  AI
Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIALIRSSNNAEEARQKLIDRFELSELQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D ++   + +  +L   +++   I  E+ EVKE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDEIIETIKDLKDILARKERRMQVIKDELLEVKEKYGDGRR 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                              +  +       +  ++    +      V     + +  D L
Sbjct: 482 STIEYAGGDLSIEDMIPDERVIITISHAGYIKRTSLNEYKRQNRGGVGQKGSNTRNEDFL 541

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD 609
           +          +L  +  GK + +    +  G    +  AIQ LI++  +  +       
Sbjct: 542 EYLFSGTNHQYMLFFTQKGKCFWMRVYEIPEGSKSSKGRAIQNLINIEQDDRVKAFICTQ 601

Query: 610 S--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                       +++ + KG        +       G   + +  ++++      TGD  
Sbjct: 602 DLKDEEYVNNHFVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEDDELLEAKLTTGDSQ 661

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRS 718
           V +  ++ K + F   +   M R   GVR  +  D     V    + +     +  +   
Sbjct: 662 VMLAVKSGKAIRFEEGKTRPMGRNASGVRGITLADDNDEVVGMISVDDMESNILVVSENG 721

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +     +  RGG G        ++G  ++
Sbjct: 722 YGKRSSLEDYRITNRGGKGVKTISITEKTGNLVA 755



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 96/318 (30%), Gaps = 16/318 (5%)

Query: 391 KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
           + ++I   +   I     NE K +         +  + +  L           +Y +   
Sbjct: 500 ERVIITISHAGYIKRTSLNEYKRQNRGGVGQKGSNTRNEDFLEYLFSG--TNHQYMLFFT 557

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
                      +    S   +   I   +  +++       +  +     E        +
Sbjct: 558 QKGKCFWMRVYEIPEGSKSSKGRAIQN-LINIEQDDRVKAFICTQDLKDEEYVNNHFVIM 616

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                  +   V  ++       +++   ++A+  KE D L  A       +++L    G
Sbjct: 617 -----ATKKGQVKKTSLEQYSRPRTN--GINAITIKEDDELLEAKLTTGDSQVMLAVKSG 669

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEES 629
           KA     G       +   ++ +   + N ++V     D     +LVVS  G        
Sbjct: 670 KAIRFEEGKTRPMGRNASGVRGITLADDNDEVVGMISVDDMESNILVVSENGYGKRSSLE 729

Query: 630 EIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG- 684
           +     R GK      +   +   + +      D + ++ ++   +   +  +  M R  
Sbjct: 730 DYRITNRGGKGVKTISITEKTGNLVAIKNVTDDDDLMIINKSGIAIRLEVSDLRVMGRAT 789

Query: 685 KGVRLQSYKDGGISDVIC 702
           +GVRL + K       + 
Sbjct: 790 QGVRLINLKGKDSIAAVA 807


>gi|325265437|ref|ZP_08132160.1| DNA gyrase, A subunit [Clostridium sp. D5]
 gi|324029295|gb|EGB90587.1| DNA gyrase, A subunit [Clostridium sp. D5]
          Length = 833

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/761 (31%), Positives = 398/761 (52%), Gaps = 34/761 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKDTVDFIPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID+      +  IE +L+ I GPDFPTG  I+     I E+YR GRG 
Sbjct: 187 NLREVISAVVKIIDDQIEENGDTVIEDILKIIKGPDFPTGAEIL-GTRGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K++  + D+ D+S  + 
Sbjct: 246 IRVRAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L     P+VM +  +L+ +L H+ 
Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALV-NNEPKVMNILDMLRLYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTEN 426
           EV+ RR+ + +   + R  ILKGLLIA  +IDE+I IIR     +     +++RF LT+ 
Sbjct: 365 EVVTRRTKYELNKAEERAHILKGLLIALDHIDEVIKIIRASKNVQIAKEELIARFDLTDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +++SE + L+ +  ++ ++L   K   + I  EI  + + +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLESEYEELMKKIGELKAILADRKLLLSVIREEILIINDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSV 538
                   RRT+       +     + +I +E + + ++  G+I+ +             
Sbjct: 485 GDE-----RRTSI---GFDEFDISMEDLIPRENVVITMTKLGYIKRMTVDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +  +   + D +K      T   I+  +  G+ Y +    +        G AI  ++ L
Sbjct: 537 GIKGMQTLDEDYIKELFITSTHHYIMFFTNTGRVYRIKGYEIPEASRTARGTAIINILQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y+    L + + KG       ++     + G   + +  ++++  V
Sbjct: 597 MPDEKITAMIPIKEYEDGKFLFMATEKGLVKKTPITDYANVRKTGLAAITLREDDRLIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
                 + + +V +  + + FS   +    R   GVR  +  D      +     +G   
Sbjct: 657 KITDNEEDIVLVTKYGQCIRFSEKDVRATGRTSMGVRGMNLSDRDEVIAMQMS-TQGSDL 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  + +   +  N        RGG G    K   ++G  + 
Sbjct: 716 LIVSDKGMGKRTNLDEFTTQNRGGKGVKCYKITEKTGNVVG 756



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 79/270 (29%), Gaps = 21/270 (7%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +     Y +       +   +  +    S   +   I   ++ +        +       
Sbjct: 554 ITSTHHYIMFFTNTGRVYRIKGYEIPEASRTARGTAIINILQLM------PDEKITAMIP 607

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
             E        +       +   +                 L+A+  +E D L       
Sbjct: 608 IKEYEDGKFLFMATEKGLVKKTPITDYANVRKT-------GLAAITLREDDRLIEVKITD 660

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             + I+L++  G+       ++ +       ++ + +L+   +++   +      LL+VS
Sbjct: 661 NEEDIVLVTKYGQCIRFSEKDVRATGRTSMGVRGM-NLSDRDEVIAMQMSTQGSDLLIVS 719

Query: 619 SKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIF 673
            KG        E     R GK      +   +   +  +  V  D  + ++     ++  
Sbjct: 720 DKGMGKRTNLDEFTTQNRGGKGVKCYKITEKTGN-VVGMKAVNEDSEIMIINTEGIIIRM 778

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               I  + R   GV+L +  +G     + 
Sbjct: 779 QCSDISVLGRVTSGVKLINLAEGDTVASVA 808



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 47/412 (11%), Positives = 129/412 (31%), Gaps = 8/412 (1%)

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA   V+           +T++  Q      +  +  L   K     E++  +  E  
Sbjct: 401 IIRASKNVQIAKEELIARFDLTDVQAQAIVDMRLRALTGLEREKLESEYEELMKKIGELK 460

Query: 310 RIVLFPK---NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            I+   K   +   +  L++   +      +      ++     +P+   +  + K    
Sbjct: 461 AILADRKLLLSVIREEILIINDKYGDERRTSIGFDEFDISMEDLIPRENVVITMTKLGYI 520

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R  V   +S  R     + ++ L    I  L I      I        V   +      
Sbjct: 521 KRMTVDTFKSQNRGGKGIKGMQTLDEDYIKELFITSTHHYIMFFTNTGRVYRIKGYEIPE 580

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
                    + ++ +L   +  + +  +   ++     + + K    +            
Sbjct: 581 ASRTARGTAIINILQLMPDEKITAMIPIKEYEDGKFLFMATEKGLVKKTPITDYANVRKT 640

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             +    R      EV   D       ++ K    +  S +    + ++ S+ +  ++  
Sbjct: 641 GLAAITLREDDRLIEVKITDNE-EDIVLVTKYGQCIRFSEKDVRATGRT-SMGVRGMNLS 698

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           + D +     +     +L++S  G           +    G+ ++         ++V   
Sbjct: 699 DRDEVIAMQMSTQGSDLLIVSDKGMGKRTNLDEFTTQNRGGKGVKCYKITEKTGNVVGMK 758

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV 656
             +   ++++++++G    ++ S+I    R   G   + ++  + +  V KV
Sbjct: 759 AVNEDSEIMIINTEGIIIRMQCSDISVLGRVTSGVKLINLAEGDTVASVAKV 810


>gi|193213726|ref|YP_001994925.1| DNA gyrase subunit A [Chloroherpeton thalassium ATCC 35110]
 gi|193087203|gb|ACF12478.1| DNA gyrase, A subunit [Chloroherpeton thalassium ATCC 35110]
          Length = 841

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/759 (33%), Positives = 401/759 (52%), Gaps = 29/759 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E +  +++   + + YL Y++S I  RA+PD+RDG KPVHRR++  M+E+GL  G +
Sbjct: 1   MQREKIIPINIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMNELGLQAGRS 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD +VYDS+VR+ Q F  RYPL+ GQGNFG++DGD+ AA RY
Sbjct: 61  YKKSARVVGEVLGKYHPHGDSAVYDSIVRMVQNFSLRYPLVDGQGNFGSVDGDAPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM +++  IL+ +D++ +DF   +++   EP+V P+ FPNLL NG SGIAVGMAT+I
Sbjct: 121 TEVRMMRISSEILRDLDKNTIDFAPNFDDSLEEPIVLPAAFPNLLINGASGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A I+NPEI+IE+L+ YI  PDFPT G I+     + ++Y  GRG   
Sbjct: 181 PPHNLTEVIDGVIAYINNPEITIEELMTYIKAPDFPTAG-IIYGYNGVRDAYLTGRGKIV 239

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RA+  VE     G   I++TE+PYQV K+RLIEKIA L+  K++  + D+RDES  D  
Sbjct: 240 LRAKVQVEVTPKNGRESIIITELPYQVNKARLIEKIAGLVQQKKVEGIADLRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    +     +++  +F L+ ++  F + M  L  G +P+V+ L   ++ ++ HR E
Sbjct: 300 RVVIELKKDAVTQVVINRLFKLTQLQETFGVIMLALV-GGIPRVLTLKETIQYYVNHRHE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +   +RR  IL+GL I   N+DEIIA IR        +  +++ FSL++ Q
Sbjct: 359 VILRRTRFELDEAERRAHILEGLKICLDNLDEIIATIRQSPDTETARERLMATFSLSDLQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E   LL   E + ++L + K Q   I  E+ ++K+ + 
Sbjct: 419 AKAILDMRLQRLTGLERQKIEDEYLELLKTIEGLRAILANEKLQMQLIKKELLQIKKTYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---- 543
                  RRT         +    + MI +E + + I+++G+I+                
Sbjct: 479 DE-----RRTQIV---YETEDFSVEDMIAEEDVVITITHQGYIKRFPVSGYRRQGRGGRG 530

Query: 544 ----HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
                 +E D ++    A T   IL  ++ GK Y L    +        G +I  LI+  
Sbjct: 531 ISGVSAREDDFIEHMFIASTHHYILFFTSHGKCYWLKVHEIPEAGRTARGRSITNLIEFA 590

Query: 598 HNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I   +    ++ T  +++ +  G       SE     R G   + ++  +++    
Sbjct: 591 TGEKIKASINVKEFNDTQFIVMATKNGTIKKTPLSEYSNPRRSGIIAINITDNDELVGAS 650

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
              G H + +       + F    +  M R   GV+  S         +        T +
Sbjct: 651 LTDGSHQIVLAKNTGYAVRFPEQNVRPMGRNSIGVKGASISGDEAIISMVSTPRNDATLL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 Y +        + KRG  G +  K   + GK +
Sbjct: 711 AITDNGYGKRSAIEDYRMTKRGANGVITLKANEKVGKLV 749



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 98/343 (28%), Gaps = 21/343 (6%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
           +MQ I + +  +K           +        +   +      +T      I    +  
Sbjct: 462 QMQLIKKELLQIKKTYGDERRTQIVYETEDFSVEDM-IAEEDVVITITHQGYIKRFPVSG 520

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI-----ACEIREVKEIFSKSTDLG 493
            R+           +   +       + S                ++  +   +  T  G
Sbjct: 521 YRRQGRGGRGISGVSAREDDFIEHMFIASTHHYILFFTSHGKCYWLKVHEIPEAGRTARG 580

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHF 545
           R  T   E +  +K      + E      ++         K             + A++ 
Sbjct: 581 RSITNLIEFATGEKIKASINVKEFNDTQFIVMATKNGTIKKTPLSEYSNPRRSGIIAINI 640

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            + D L  A     + +I+L    G A   P  N+     +   ++    ++ ++ I++ 
Sbjct: 641 TDNDELVGASLTDGSHQIVLAKNTGYAVRFPEQNVRPMGRNSIGVKGA-SISGDEAIISM 699

Query: 606 FVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDH 660
                +   LL ++  G        +     R     + + + EK+  +V       G+ 
Sbjct: 700 VSTPRNDATLLAITDNGYGKRSAIEDYRMTKRGANGVITLKANEKVGKLVDMLEVNDGED 759

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           + ++     +    I  I  M R   GVRL    +      + 
Sbjct: 760 IIIITNKGIVNRQHIADIRVMGRNTSGVRLIRLDEDDFVSAVA 802


>gi|169351627|ref|ZP_02868565.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552]
 gi|169291849|gb|EDS73982.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552]
          Length = 820

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/764 (32%), Positives = 406/764 (53%), Gaps = 36/764 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ V L   ++  ++ YA+S I  RA+PD+RDG KPV RRII+ MS++G   G  
Sbjct: 1   MEERGIRKVKLTSEMKNSFMQYAMSVIVARALPDVRDGLKPVQRRIIYGMSDLGCTPGTP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD S+Y++LVR+AQ F  RY L+ G GNFG+IDGD AAA RY
Sbjct: 61  YKKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  +++ + ED +DF   Y+ E+ EP V P++ PNLL NG++GIAVGMAT+I
Sbjct: 121 TEARMSKISSELVRDLKEDTIDFIPNYDGEEQEPSVLPARIPNLLINGSTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN+ E+ +A LA+  NP+ISI + +  YI GPDFPTGG I+  + +I ++Y  G G  
Sbjct: 181 PPHNLGEVIDAILAVAKNPDISIVELMENYIQGPDFPTGGYIL-GKSAIKKAYETGNGLI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  + E       I+VTE+PY V K+R+IEK+++L+  K+I  + +IRDES  D  
Sbjct: 240 VMRAKTEI-EEKGNKKVIIVTELPYMVNKARMIEKMSQLVRDKKIEGITEIRDESNRDGI 298

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R + P++++  ++ L+ ++T F  N   L     P+ + L  ++  +L H+ E
Sbjct: 299 RVVIELRRDIQPEVILNQLYKLTSLQTTFGANCIALV-NNEPKTLNLKEMISLYLEHQEE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR+   + R  IL+GL  A   ID II +IR+       +  ++  F++++ Q
Sbjct: 358 VIRRRTKFRLNKAEDRAHILEGLKRALDQIDAIIELIRSSRTTDIIQTRLMEEFNMSDKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI  ++L+ L  LE  +I+ +L+ LL     +  +L + ++  + I  E+ E+K+ + 
Sbjct: 418 AKAIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDILENRERLLSIIHDELEEIKDKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                 +RRT   +          + +I  E + + ++N G+I+ +   +          
Sbjct: 478 D-----KRRTEIIQ---GTFDLEDEDLIPVEDVIISLTNNGYIKRMPVDTYKSQNRGGRG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +     D +   ++  T D +L  +  GK Y L   N+       +   +  L+DL+
Sbjct: 530 IKGMSTNNDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFGRSAKGLPVVNLLDLD 589

Query: 598 HNQDIVTAFVYDSTC-------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + I +    D           L  V+  G    V  +E     + GK  + +   +++
Sbjct: 590 KEESIKSMINIDRKQIQQNSNYYLFFVTKDGIVKRVHINEFQLIRQSGKIAICLKDNDQL 649

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V   +G D + +   N KL+ F    +  M R   GV+  +     +  +      EG
Sbjct: 650 VQVKLTSGNDQILIAASNGKLVRFEESNVRPMGRISSGVKGINVDGSEVVGMTT--DKEG 707

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    R Y +        L  RGG G        R+GK ++
Sbjct: 708 KYILVVTERGYGKMSPLEEYRLSNRGGKGVKTIHTTERNGKIVA 751



 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 80/218 (36%), Gaps = 14/218 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVI-SNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
           E  ++     ++ + +     +   +  G ++ +  +           A+  K+ D L  
Sbjct: 592 ESIKSMINIDRKQIQQNSNYYLFFVTKDGIVKRVHINEFQLIRQSGKIAICLKDNDQLVQ 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  D+IL+ +++GK       N+        +    I+++ ++ +V          
Sbjct: 652 VKLTSGNDQILIAASNGKLVRFEESNVRPMGRIS-SGVKGINVDGSE-VVGMTTDKEGKY 709

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRK 669
           +LVV+ +G   +    E   + R GK    +       K+  +  V GD  + ++ ++  
Sbjct: 710 ILVVTERGYGKMSPLEEYRLSNRGGKGVKTIHTTERNGKIVALRAVNGDEDLLIITDDGI 769

Query: 670 LLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
           ++   ++Q+    R  +GVRL    +      +     
Sbjct: 770 MIRLPMEQVTTAGRATQGVRLIKVNENNKVSSVEVVEK 807


>gi|325124861|gb|ADY84191.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 823

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/765 (29%), Positives = 397/765 (51%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRIMYGMNELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGG I+  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGG-ILMGRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M++ F +NM  +     P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVD-GAPKFLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN +        ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------K 534
           ++ F       +RRT     +        + +IE++ + + +S++G+++ +         
Sbjct: 479 QKRFGD-----KRRTQIT--ASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +  ++GD ++  L++ T D +   +  GK Y   A  +       +   I  
Sbjct: 532 RGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L+  + I T               ++  G     +  E       G   L +   ++
Sbjct: 592 LLQLDKGEHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDE 651

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       + F+ D +  M R   GVR  + ++G           E
Sbjct: 652 LSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMGRSAAGVRGINLREGDYVVGSGILKPE 711

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G    K   ++G    
Sbjct: 712 DE-VLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAG 755



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 6/192 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  K+GD L   L       IL+ +  G A T    ++ +
Sbjct: 624 TVKRTKIREFENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRA 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 A    I+L     +V + +     ++L +S KG       SE     R GK   
Sbjct: 684 MGRSA-AGVRGINLREGDYVVGSGILKPEDEVLTISEKGYGKRTAASEYPVKGRGGKGIQ 742

Query: 643 KVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
                EK   +  V  V G   + ++  +  ++ F    + +  R   GVRL    DG  
Sbjct: 743 TAKIGEKNGPLAGVAVVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNA 802

Query: 698 SDVICFKICEGL 709
              +     E  
Sbjct: 803 VASMAVVPAEAE 814


>gi|222153032|ref|YP_002562209.1| DNA gyrase subunit A [Streptococcus uberis 0140J]
 gi|222113845|emb|CAR41948.1| DNA gyrase subunit A [Streptococcus uberis 0140J]
          Length = 837

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/756 (31%), Positives = 388/756 (51%), Gaps = 21/756 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA   ++ NP+ +   L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLGESIEAVKMVMQNPDCTTRDLMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTSTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLDGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +     VP+++ L  I+  ++ H+ EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSF-NMLAIENGVPKILTLRQIIDNYIKHQIEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 ITRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+A    +  +L + ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLIALIADLTDILANPERVKAIIIEEMDEIKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
           +    R      EV   +   L +             +    +   R+ K     +    
Sbjct: 479 A---RRTELMIGEVLSLEDEDLIEEEDVLITFSNKGYIKRLAQDEFRAQKRGGRGVQGTG 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             + D +K  +   T D +L  +  G+ Y L A  +       +   +  L+ L+  + I
Sbjct: 536 VNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEVPEYGRTAKGLPVVNLLKLDEEETI 595

Query: 603 VTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            T                 + +G       SE     + G   L +   +++  V+   G
Sbjct: 596 QTIIKAKREDIEGKYFFFTTRQGLVKRTNASEFHNIRQNGLRALNLKEGDELINVLMTNG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            + + +       + F+   I +M R   GVR    +D  +  V   +I +    +    
Sbjct: 656 QEDIIIGTRLGYSVRFNESSIRQMGRSATGVRGVKLRDQDLV-VGAARITDDQEVLIITE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +           RGG G        ++G    
Sbjct: 715 NGYGKKTLASEYPTKGRGGKGIKTANITAKNGPIAG 750



 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 6/190 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                         L AL+ KEGD L   L  +  + I++ +  G +      ++     
Sbjct: 622 RTNASEFHNIRQNGLRALNLKEGDELINVLMTNGQEDIIIGTRLGYSVRFNESSIRQMGR 681

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
               ++  + L     +V A       ++L+++  G       SE     R GK      
Sbjct: 682 SATGVRG-VKLRDQDLVVGAARITDDQEVLIITENGYGKKTLASEYPTKGRGGKGIKTAN 740

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           +   +     LV     + + ++     ++   I  + +  R   GV++           
Sbjct: 741 ITAKNGPIAGLVTVSGQEDIMIITNKGVIIRTHISDVSQTGRATLGVKVMRLDQDAKIVT 800

Query: 701 ICFKICEGLT 710
                 E  T
Sbjct: 801 FALVEAEAET 810


>gi|225870526|ref|YP_002746473.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047]
 gi|225699930|emb|CAW93866.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047]
          Length = 831

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/756 (30%), Positives = 392/756 (51%), Gaps = 21/756 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++++  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E + GPDFPTG  +V  R  I ++Y  G+G   
Sbjct: 181 PPHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGA-LVMGRSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY + K+++ E I  L   KRI  +  +RDES+     
Sbjct: 240 LRSRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +   G +P+++ L  I+  ++ H+++V
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSF-NMLAIEGGIPKILSLRQIIDNYILHQKDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 ITRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILARPERIEAIIKEEMEEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                R      EV   +   L +             +    +   RS K     +    
Sbjct: 479 P---RRTELMIGEVLSLEDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQGTG 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             + D ++  +   T D +L  +  G+ Y L A  +       +   +  L+ L+  + I
Sbjct: 536 VNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLKLDDGETI 595

Query: 603 VTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            T                 + +G     E SE     + G   L +   +++  V+   G
Sbjct: 596 QTIINAKKEDILDKYFFFTTKQGIVKRTEVSEFSNIRQNGLRALNLKEGDELINVLLTNG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            + + +   +   + F+   I  M R   GVR    ++     V   +I +    +    
Sbjct: 656 QEDIIIGTRSGYSVRFNEATIRGMGRSATGVRGVKLREEDWV-VGASRINDKQEVLVITE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +  +        RGG G        ++G+   
Sbjct: 715 NGYGKRTSAAEYPTKGRGGKGIKTANITAKNGQLAG 750



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 7/121 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           + L     +V A   +   ++LV++  G       +E     R GK      +   +  +
Sbjct: 689 VKLREEDWVVGASRINDKQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKNG-Q 747

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  ++ V G + + V+     ++  ++  I +  R   GV++                 E
Sbjct: 748 LAGLMTVDGSEDIMVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVTFTLVQAE 807

Query: 708 G 708
            
Sbjct: 808 D 808


>gi|229083322|ref|ZP_04215683.1| DNA gyrase subunit A [Bacillus cereus Rock3-44]
 gi|228699988|gb|EEL52612.1| DNA gyrase subunit A [Bacillus cereus Rock3-44]
          Length = 795

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/736 (33%), Positives = 406/736 (55%), Gaps = 28/736 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR+++AM+++G+    A+KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+++VR+AQ F QRY L+ G GNFG++DGDSAAA RYTEARM++++  +++ + ++ +D+
Sbjct: 61  YETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMELIRDITKNTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EP+V P++FPNLL NGT+GIAVGMAT+IP H + E+ +  LAL  NP+I+I
Sbjct: 121 QDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPHQLGEVIDGVLALSHNPDITI 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            +L+E I GPDFPT G ++  R  I  +Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 AELMECIPGPDFPTAG-LILGRSGIRRAYETGRGSIILRAKVEIEEKPNGKQTIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIAEL+  K+I  + D+RDES  +   ++    R  + ++L+ +++  + 
Sbjct: 240 YQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIVMEVRRDANANVLLNNLYKHTA 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ++T F +NM  L     PQV+ L   L  +L H++ V+ RR+++ ++  + R  IL+GL 
Sbjct: 300 LQTSFGINMLSLV-NGEPQVLNLKQNLYHYLEHQKVVIRRRTAYELEKAEARAHILEGLR 358

Query: 395 IAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           IA  ++DE+I +IR+       +  ++ RF L+E Q  AIL++RL+ L  LE  +I+ E 
Sbjct: 359 IALDHLDEVITLIRSSKTADIARQGLMERFGLSEKQAQAILDMRLQRLTGLEREKIEQEY 418

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +L+    ++ ++L   ++    I  E+ EVKE F+      +RRT         ++   
Sbjct: 419 QDLMKLIAELKAILADEEKVLEIIREELTEVKERFND-----KRRTEIT--IGGMESIED 471

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRI 563
           + +I ++ I + +++ G+I+ L + +          +  +   + D ++  L   T D I
Sbjct: 472 EDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEQLLTTSTHDHI 531

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  +  GK Y      +       +   I  L+ ++  + +        +     L   +
Sbjct: 532 LFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWVNAIIPIREFGDDQYLFFTT 591

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
             G +     S        G   + +  E+++  V   +GD  + V   N  L+ F+   
Sbjct: 592 KYGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQD 651

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R   GV+  +  D      +   + E +  +      Y +        L  RGG 
Sbjct: 652 VRSMGRNAAGVKAITLGDEDQVVGMEI-VEEDMNVLIVTKNGYGKRTPIEEYRLQSRGGK 710

Query: 737 GSLVPKGFPRSGKFLS 752
           G        ++GK ++
Sbjct: 711 GLKTCNITDKNGKLVA 726



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 67/182 (36%), Gaps = 8/182 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 606 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 664

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 665 ITLGDEDQVVGMEIVEEDMNVLIVTKNGYGKRTPIEEYRLQSRGGKGLKTCNITDKNG-K 723

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   ++      +     +
Sbjct: 724 LVAVKSVTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQKD 783

Query: 708 GL 709
             
Sbjct: 784 ED 785


>gi|322373141|ref|ZP_08047677.1| DNA gyrase, A subunit [Streptococcus sp. C150]
 gi|321278183|gb|EFX55252.1| DNA gyrase, A subunit [Streptococcus sp. C150]
          Length = 823

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/754 (32%), Positives = 394/754 (52%), Gaps = 16/754 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVKLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++ A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKFALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLSETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGG-LVMGKTGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +    VP+++ L  IL +++AH++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEK-GVPKILSLRQILADYIAHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN           ++RF LTE Q 
Sbjct: 359 VVRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSQTDSEAQAELMARFELTERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E ++LLA    +  +L    +    I  E+ E K  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPGRVIAIIKEELDESKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
           +            +   D    +  +I       +    +   RS K     +      +
Sbjct: 479 ARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRGVQGTGVND 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +  ++  G+ Y L    +       +   I  L+ L+  + I T 
Sbjct: 539 DDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETIQTV 598

Query: 606 FVYD-----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                        L+ V+ +G     +E+E     + G   LK+   +++  V   TG+ 
Sbjct: 599 INAKSDEASENNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTTGNE 658

Query: 661 VAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
             ++G      + F  + I  MSR   GV+  + +DG    V    I +    +  + + 
Sbjct: 659 EIIIGTKFGYSVRFKENTIRSMSRMAAGVKGVTLRDGDQV-VGAAAITDDQEVLIISEKG 717

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +        RGG G        ++G    
Sbjct: 718 YGKRTSATEYPTKGRGGKGIKTANITDKNGHLAG 751



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 81/227 (35%), Gaps = 10/227 (4%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           D G    T       + +     +       V  +     ++++ +   L AL  +EGD 
Sbjct: 590 DEGETIQTVINAKSDEASENNHLVFVTRQGLVKRTKEAEFKNIRQN--GLIALKLREGDE 647

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L         + I++ +  G +       + S      A    + L     +V A     
Sbjct: 648 LINVFLTTGNEEIIIGTKFGYSVRFKENTIRSMSRMA-AGVKGVTLRDGDQVVGAAAITD 706

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGE 666
             ++L++S KG       +E     R GK     +  +K   +  +  V+G + + V+ +
Sbjct: 707 DQEVLIISEKGYGKRTSATEYPTKGRGGKGIKTANITDKNGHLAGIATVSGNEDIMVMTD 766

Query: 667 NRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWI 712
              ++  ++  I +  R  +GV++        + ++ F + E    +
Sbjct: 767 TGVIIRTAVANISQTGRATQGVKVMRL--DNSARIVTFALVEPEEVV 811


>gi|312865217|ref|ZP_07725445.1| DNA gyrase, A subunit [Streptococcus downei F0415]
 gi|311099328|gb|EFQ57544.1| DNA gyrase, A subunit [Streptococcus downei F0415]
          Length = 829

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/753 (30%), Positives = 388/753 (51%), Gaps = 15/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALDMLRDINKNTVDFQDNYDGSEKEPLVLPSRFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++D PE + ++++E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLGEAIDAVKLVMDKPEATTKEIMEVMPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +    VP+++ L  I+  ++ H++EV
Sbjct: 300 FIIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEK-GVPKILSLRQIIDNYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  ++DE+IAIIR           ++SRF L+E Q 
Sbjct: 359 IVRRTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRGSQTDAEAQAQLMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E ++LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPERVVTIIKDEMDEIKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
                        +   D    +  +I       +    +   RS K     +      +
Sbjct: 479 PRRTELMVGEVLSLEDEDLIEEENVLITLSNKGYIKRLAQDEFRSQKRGGRGVQGTGVND 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L   + I T 
Sbjct: 539 DDFVRDLVSTSTHDVVLFFTNQGRVYRLKGYEIPEYGRTAKGLPVVNLLKLTDGETIQTI 598

Query: 606 FVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
              +        L   + +G       SE     + G   L +   +++  V+  TG D 
Sbjct: 599 ISLNQNEIDEKSLFFTTRQGLVKRTSISEFTNIRQNGLRALNLKDGDELINVLLTTGQDE 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +       + F  + +  M RG  GV+  + +D          I +    +    + Y
Sbjct: 659 IIIGTHFGYSVRFKEEVVRNMGRGATGVKGITLRDADQVVGASV-IRDDQEVLVITEKGY 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +           RGG G        ++G    
Sbjct: 718 GKRTLASEYPTKGRGGKGIKTANITDKNGSLAG 750



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 6/148 (4%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               D I++ +  G +       + +       +   I L     +V A V     ++LV
Sbjct: 653 TTGQDEIIIGTHFGYSVRFKEEVVRNMGRGATGV-KGITLRDADQVVGASVIRDDQEVLV 711

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           ++ KG       SE     R GK      +   +     LV     + + ++ +   ++ 
Sbjct: 712 ITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGSLAGLVTVDGHEDIMIMTDTGVIIR 771

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGISD 699
             +  I +  R   GV++    +     
Sbjct: 772 TGVSNISQTGRSTMGVKVMRLDENAKIV 799


>gi|313122781|ref|YP_004033040.1| DNA gyrase subunit a [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312279344|gb|ADQ60063.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 823

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/765 (29%), Positives = 396/765 (51%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+ 
Sbjct: 1   MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELA 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGG I+  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTNKELMKAIPGPDFPTGG-ILMGRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M++ F +NM  +     P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVD-GAPKSLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN +        ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------K 534
           ++ F       +RRT     +        + +IE++ + + +S++G+++ +         
Sbjct: 479 QKRFGD-----KRRTQIT--ASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +  ++GD ++  L++ T D +   +  GK Y   A  +       +   I  
Sbjct: 532 RGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L+  + I T               ++  G     +  E       G   L +   ++
Sbjct: 592 LLQLDKGEHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDE 651

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       + F+ D +  M R   GVR  + ++G           E
Sbjct: 652 LSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMGRSAAGVRGINLREGDYVVGSGILKPE 711

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G    K   ++G    
Sbjct: 712 DE-VLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAG 755



 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 6/192 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  K+GD L   L       IL+ +  G A T    ++ +
Sbjct: 624 TVKRTKIREFENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRA 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 A    I+L     +V + +     ++L +S KG       SE     R GK   
Sbjct: 684 MGRSA-AGVRGINLREGDYVVGSGILKPEDEVLTISEKGYGKRTAASEYPVKGRGGKGIQ 742

Query: 643 KVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
                EK   +  V  V G   + ++  +  ++ F    + +  R   GVRL    DG  
Sbjct: 743 TAKIGEKNGPLAGVAVVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNA 802

Query: 698 SDVICFKICEGL 709
              +     E  
Sbjct: 803 VASMAVVPAEAE 814


>gi|156888527|gb|ABU96668.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/756 (31%), Positives = 391/756 (51%), Gaps = 21/756 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y ++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +     VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRRDASANVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q 
Sbjct: 359 ITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                R      EV   +   L +             +    +   R+ K     +    
Sbjct: 479 P---RRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTG 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             + D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L   + I
Sbjct: 536 VNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETI 595

Query: 603 VTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            T                 + +G     E SE     + G   L +   +++  V+   G
Sbjct: 596 QTIINARKEETAGKSFFFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            D + +  ++   + F+   I  M R   GVR  S ++     V   +I +    +    
Sbjct: 656 QDDIIIGTQSGYSVRFNEASIRNMGRSATGVRGVSLREDDRV-VGASRINDHQEVLVITE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +           RGG G       P++G+   
Sbjct: 715 NGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 57/160 (35%), Gaps = 8/160 (5%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            +  D I++ +  G +      ++ +       ++  + L  +  +V A   +   ++LV
Sbjct: 653 TNGQDDIIIGTQSGYSVRFNEASIRNMGRSATGVRG-VSLREDDRVVGASRINDHQEVLV 711

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           ++  G     E +E     R GK      +   +  ++  +V V G + + V+     ++
Sbjct: 712 ITENGYGKRTEATEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVII 770

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
             ++  I +  R   GV++                 +   
Sbjct: 771 RTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEE 810


>gi|146306879|ref|YP_001187344.1| DNA gyrase subunit A [Pseudomonas mendocina ymp]
 gi|145575080|gb|ABP84612.1| DNA gyrase subunit A [Pseudomonas mendocina ymp]
          Length = 922

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/841 (31%), Positives = 415/841 (49%), Gaps = 112/841 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDN +++++ L++YI GPDFPT G I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLSEVIDGCLALIDNADLTVDDLMQYIPGPDFPTAG-IINGRAGIIEAYRTGRGRIYI 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   +VVTE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 243 RARVEVEDIDKVGGRQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   PD+++ +++  + M++ F +N+  L     P+ M L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPDVVLNNLYAQTQMQSVFGINVVALVD-GQPKTMNLKDMLEVFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ + ++    R  IL+G  +A  NID +I +I+    P                 
Sbjct: 362 VVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWESSAV 421

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++ +E   
Sbjct: 422 EAMVERAGADSCRPEGLDPQYGLREGKYYLSPEQAQAILELRLHRLTGLEHEKLLAEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L+   ++  +L S ++    I  E+ +VK  F  +     RRT       + +      
Sbjct: 482 ILSLIGELIRILTSPERLMEVIREELEKVKAEFGDA-----RRTEII---ASRQDLTIAD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+          + +      SA   K+ D ++  L A++   +LL
Sbjct: 534 LITEEERVVTISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD-------------- 609
            S+ GK Y L    +        G  +  L+ L+  + I      D              
Sbjct: 594 FSSKGKVYWLRTFEIPEASRAARGRPLVNLLPLDEGERITAMLQIDLEALQQSAGADEDL 653

Query: 610 ----------------------------------STCKLLVVSSKGNAFIVEESEIIANT 635
                                             +   + + ++ G        +     
Sbjct: 654 DDEGLVIEGEATEVVEAEEVEEVEGETPELVAEPTGAFIFMATAFGTVKKTPLVQFSRPR 713

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
             G   LK+   + +       G   V +  +  K+L F+  ++  M R  +GVR     
Sbjct: 714 SAGLIALKLEEGDTLIAAAITDGAKEVMLFSDAGKVLRFAESKVRTMGRTARGVRGMRL- 772

Query: 694 DGGISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            G    +I   I E G   + ++ R + +           RGG G +      R+GK + 
Sbjct: 773 -GKDQRLISMLIPESGAQILTASERGFGKRTGLGKFPRRGRGGQGVIAMVTSERNGKLVG 831

Query: 753 S 753
           +
Sbjct: 832 A 832


>gi|50914216|ref|YP_060188.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394]
 gi|94994419|ref|YP_602517.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750]
 gi|139473757|ref|YP_001128473.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo]
 gi|306827344|ref|ZP_07460631.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           pyogenes ATCC 10782]
 gi|73919727|sp|Q5XC58|GYRA_STRP6 RecName: Full=DNA gyrase subunit A
 gi|50903290|gb|AAT87005.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394]
 gi|94547927|gb|ABF37973.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750]
 gi|134272004|emb|CAM30243.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo]
 gi|304430491|gb|EFM33513.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           pyogenes ATCC 10782]
          Length = 828

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/753 (31%), Positives = 391/753 (51%), Gaps = 15/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ ++T F     +     VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRREASATVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 IIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
                        +   D    +  +I       +    +   R+ K     +       
Sbjct: 479 PRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNN 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L   + I T 
Sbjct: 539 DDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTI 598

Query: 606 FVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                           + +G     E SE     + G   LK+   +++  V+  +G D 
Sbjct: 599 INARKEETAGKSFFFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDD 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +   +   + F+   I  M R   GVR    ++     V   +I +    +      +
Sbjct: 659 IIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDDRV-VGASRIRDNQEVLVITENGF 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +        RGG G       P++G+   
Sbjct: 718 GKRTSATDYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           + L  +  +V A       ++LV++  G       ++     R GK      +   +  +
Sbjct: 689 VKLREDDRVVGASRIRDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKNG-Q 747

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  +V V G + + V+     ++  ++  I +  R   GV++                 E
Sbjct: 748 LAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPE 807

Query: 708 GLTW 711
             + 
Sbjct: 808 DSSI 811


>gi|316934136|ref|YP_004109118.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris DX-1]
 gi|315601850|gb|ADU44385.1| DNA topoisomerase IV, A subunit [Rhodopseudomonas palustris DX-1]
          Length = 753

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/737 (56%), Positives = 542/737 (73%), Gaps = 2/737 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKS
Sbjct: 12  EIHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEAR
Sbjct: 72  AKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L G+DED V FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN
Sbjct: 132 MTDVARLLLDGIDEDGVAFRPNYDGQAKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LI+ P+     LL ++ GPDFPTGGII++S+ESI E+Y  GRG FR RA+
Sbjct: 192 AAELCDAALHLIEKPDAKSRALLRFVKGPDFPTGGIIIDSKESIAEAYTTGRGAFRTRAK 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE  RG+W +VVTEIP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVRIV+ P
Sbjct: 252 WAQEEGARGTWSVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRIVIEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+RS+DP L+MES+F L+++E+R  LN+NVL  GR+P+V+ L   L+EWL H R+VL RR
Sbjct: 312 KSRSVDPALMMESLFRLTELESRISLNLNVLIKGRIPKVVGLAEALREWLDHLRDVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S+ R   I+ R+E+L G LIAYLNIDE+I IIR ED+PKPV++  F+LTE Q +AILN+R
Sbjct: 372 SNHRKTQIEHRLEVLGGYLIAYLNIDEVIRIIRTEDEPKPVLMKTFNLTEIQAEAILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE++IK E  +L AE + I+++L S  +QW ++  ++R+V+E+F   T LG+R
Sbjct: 432 LRSLRKLEEFEIKKEDKDLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L+FK+ D L  + 
Sbjct: 492 RTQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDKLGQSF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A TT ++LLL+T+G+ Y L    L  GRGHGE I++ ID+  +  IVT FV+    K L
Sbjct: 552 FAETTSKLLLLATNGRFYALDVAKLPGGRGHGEPIRMFIDMEQDAAIVTVFVHTGGRKFL 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+V E E + +TRKGK  L V   +E +   VV    D VAV+G+NRK++IF
Sbjct: 612 IASHDGQGFVVNEDECVGSTRKGKQILNVDIPNEARALTVVSEGDDSVAVIGDNRKMVIF 671

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            +DQ+PEM+RG+GVRLQ YKDGG+SDV  F   +GL W DSAGR ++ +  +L  W G R
Sbjct: 672 PLDQVPEMTRGRGVRLQKYKDGGLSDVATFSSKQGLGWRDSAGREFSATMKELAEWRGNR 731

Query: 734 GGVGSLVPKGFPRSGKF 750
              G L PKGFP+S KF
Sbjct: 732 ADAGRLPPKGFPKSNKF 748


>gi|328543836|ref|YP_004303945.1| DNA gyrase, A subunit [polymorphum gilvum SL003B-26A1]
 gi|326413580|gb|ADZ70643.1| DNA gyrase, A subunit [Polymorphum gilvum SL003B-26A1]
          Length = 912

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/851 (31%), Positives = 406/851 (47%), Gaps = 108/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   + S S   +  +++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++
Sbjct: 1   MADQDSSVSGGGLPSDIRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G ++   ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG+
Sbjct: 61  MHENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTE R+ +VA  +L  +D+D VDF+D Y+  +SEPVV P+KFPNLL NG 
Sbjct: 121 VDGDPAAAMRYTECRLQKVAHKLLDDIDKDTVDFQDNYDNSESEPVVLPAKFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +AA+A+++NP +++ +LLE I GPDFPTGGII+  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDAAIAMMENPAMTLNELLEIIPGPDFPTGGIIL-GRSGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +R +  VEE+  G   ++V+EIPYQV K+ +IEKIAEL+  KRI  + D
Sbjct: 240 SAYETGRGSVVMRGKVEVEEIRAGREALIVSEIPYQVNKATMIEKIAELVREKRIEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES      V+    +    D+++  ++  S ++T F  NM  L+ G  P+ M L  +
Sbjct: 300 IRDESDRLGMRVVIELKKDAVADVILNQLYRFSALQTSFGCNMVALN-GGRPEQMLLSDM 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LK ++A R EV+ RR+ F +     R  +L GL IA  NIDE+I +IR    P       
Sbjct: 359 LKAFIAFREEVIGRRTRFLLAKARDRAHVLVGLAIAVANIDEVIHLIRTAPDPATARAQL 418

Query: 421 FS-----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                          L+E Q  AIL+LRL+ L  L   +I  EL
Sbjct: 419 MQRNWPAMDVAPLILLIDDPRHTVNEDGTYRLSEEQARAILDLRLQRLTALGRDEIGDEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + L  E      +L S  +    I  E+ E++  F+       R+T   E          
Sbjct: 479 NKLGEEIADYLEILRSRPRIQQIIREELLEIRNEFATP-----RKTEIVE---GGADLED 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+I+          +      S +  K+ D +     A+T   +
Sbjct: 531 EDLIQREDMVVTVSHTGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPV 590

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G  Y +    L        G+A+  L+ L   + I +               ++
Sbjct: 591 LFFSSRGIVYKMKVWRLPLGGPTSRGKALVNLLPLEAGEQISSIMPLPENEDSWADLDVM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFS 674
             +++G     + S+     R GK  +K+   + +  V      D V +     + + F 
Sbjct: 651 FATTRGTVRRNKLSDFTQVNRNGKIAMKLDEGDGIIGVYTCTENDDVLLTTAAGQCIRFP 710

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFK---------------------------- 704
           +  +     R   GVR  +  +      +                               
Sbjct: 711 VTDVRVFAGRNSVGVRGINLAEDDHLISMSILRHFEADAEERVTYLKRRRLMRGETEDAG 770

Query: 705 ----------------------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                                        +  +   Y +  +     +  RGG G     
Sbjct: 771 VEDEAEEAGAEGHLSLERYAEMSAAEQIILTVSENGYGKRTSSFEYRVTGRGGKGITAMA 830

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 831 VTRRNGPLVAA 841



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 6/115 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV-SSEEKMKLVVKVTG-DHVAVVG 665
           +   +L VS  G        E     R  KG T + V      +     V   D + +V 
Sbjct: 795 AEQIILTVSENGYGKRTSSFEYRVTGRGGKGITAMAVTRRNGPLVAAFPVEDSDQIMLVT 854

Query: 666 ENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDVICFKICEGLTWIDSAGRS 718
           +  +L+   +D I    R  +GV + +  +D  +  V      E       +   
Sbjct: 855 DGGQLIRCPVDGIRVAGRATQGVIVFNTAEDEKVVAVERVSEDEDGDTGAESENG 909


>gi|323141427|ref|ZP_08076317.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067]
 gi|322414083|gb|EFY04912.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067]
          Length = 816

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/760 (31%), Positives = 388/760 (51%), Gaps = 30/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
               V  V +   +++ Y+ YA+S I +RA+PD+RDG KPVHRRI++AM E G+     +
Sbjct: 6   TTGKVLPVYIEEEMQKSYIDYAMSVIIQRALPDVRDGLKPVHRRILYAMQEAGMTPTKPY 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVYD++VRLAQ F  RY ++ G GNFG+IDGDS AA RYT
Sbjct: 66  KKSARIVGDVLGKYHPHGDISVYDAIVRLAQDFSTRYLMVDGHGNFGSIDGDSPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++AE +L+ +++D VDF   Y+E   EP V PSK P LL NG++GIAVGMAT+IP
Sbjct: 126 EVRMAKIAEAMLEDIEKDTVDFVPNYDESLKEPSVLPSKVPALLINGSAGIAVGMATNIP 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    + LIDNP++ I +L+  I GPDFPTG  I+  +E I  +Y  GRG  ++
Sbjct: 186 PHNLCEVVNGLVMLIDNPDVEIPQLMTAIKGPDFPTGACIL-GKEGITSAYNTGRGVVKI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  +    +G   IV+TEIPYQV K+ LI+ IA L     I  +  + D S+ +D   
Sbjct: 245 RAKAEIVPANKGKHHIVITEIPYQVNKANLIKDIANLAKDGVIEGITKVDDFSSLKDGMK 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++        PD+++  ++  + +++ F + M  L     P+V+ L  +L+ +L H+++V
Sbjct: 305 IVVELKSDAVPDVVLNRLYKHTALQSSFGIIMLALV-NGQPRVLNLKQVLEYYLEHQKDV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ + +     R  IL+GL IA  NID +I+ IR        +  ++  F L++ Q 
Sbjct: 364 ITRRTRYELGKAKDRAHILEGLKIALDNIDAVISTIRGSATAEIARTALMENFKLSQRQA 423

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  +I  E  +LL   + ++S+L    +  N I  +++E+K+ F  
Sbjct: 424 QAILDMRLQRLTGLERKKIDEEYVDLLETIDWLESVLADEHKVMNIIKEDLQEMKKRFGD 483

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE- 547
                 RRT   E+S        + +I +E I V IS++G+I+     +           
Sbjct: 484 E-----RRT---EISIDSSEMDIEDLIAEEDIVVTISHQGYIKRQTLDNFRSQKRGGVGK 535

Query: 548 --------GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
                    DS +    + T   IL  +  G+ Y      +       +  AI  L+ L 
Sbjct: 536 TGGSGKKIDDSAEHLFLSTTHHNILFFTNRGRVYRQKGYEIPEASRTAKGTAIINLLALM 595

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I        +     + + ++KG    +   ++ +  + G   + +  +E +  V 
Sbjct: 596 PGEKITAVIPVKEFREEQYMFMATNKGTVKKINLKDLESVRKNGMIAINLDDDEDLIGVE 655

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
              G+  + +   N   + F    +  M R   GV+  S   G     +     E    +
Sbjct: 656 LTDGNSEIILATRNGIAIRFDEQDVRTMGRTAHGVKGISLNYGDEVVAMDSVSDEDSEVL 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +      +           RGG G +  K   ++G  + 
Sbjct: 716 TATEFGMGKRTEVKEYRKQTRGGKGIINMKITEKTGLVIG 755



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 7/177 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            + A++  + + L           I+L + +G A      ++ +           I LN+
Sbjct: 639 GMIAINLDDDEDLIGVELTDGNSEIILATRNGIAIRFDEQDVRTMGRTA-HGVKGISLNY 697

Query: 599 NQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVV 654
             ++V    V D   ++L  +  G     E  E    TR GK  + +   EK   +  + 
Sbjct: 698 GDEVVAMDSVSDEDSEVLTATEFGMGKRTEVKEYRKQTRGGKGIINMKITEKTGLVIGMK 757

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            +  D  + ++     ++   +DQI +  R  +GV+L +  D      +     E  
Sbjct: 758 VINPDQEIMMITAAGLIIRTDVDQISQYGRNTQGVKLMTLNDDDKVVSLAAIHHEED 814



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/98 (10%), Positives = 34/98 (34%), Gaps = 2/98 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G                G+ I  +        ++   V +   +++++++ G     
Sbjct: 718 TEFGMGKRTEVKEYRKQTRGGKGIINMKITEKTGLVIGMKVINPDQEIMMITAAGLIIRT 777

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
           +  +I    R   G   + ++ ++K+  +  +  +  A
Sbjct: 778 DVDQISQYGRNTQGVKLMTLNDDDKVVSLAAIHHEEDA 815


>gi|322411690|gb|EFY02598.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 834

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/756 (31%), Positives = 393/756 (51%), Gaps = 21/756 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKT 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +     VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRRDASANVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q 
Sbjct: 359 ITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                R      EV   +   L +             +    +   R+ K     +    
Sbjct: 479 P---RRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTG 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             + D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L   + I
Sbjct: 536 VNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETI 595

Query: 603 VTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            T                 + +G     E SE     + G   L +   +++  V+   G
Sbjct: 596 QTIINARKEETAGKSFFFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            D + +  ++   + F+   I  M R   GVR  S ++     V   +I +    +    
Sbjct: 656 QDDIIIGTQSGYSVRFNEASIRNMGRSATGVRGVSLREDDRV-VGASRINDHQEVLVITE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +    +      RGG G       P++G+   
Sbjct: 715 NGYGKRTEAIEYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 56/160 (35%), Gaps = 8/160 (5%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            +  D I++ +  G +      ++ +       ++  + L  +  +V A   +   ++LV
Sbjct: 653 TNGQDDIIIGTQSGYSVRFNEASIRNMGRSATGVRG-VSLREDDRVVGASRINDHQEVLV 711

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           ++  G     E  E     R GK      +   +  ++  +V V G + + V+     ++
Sbjct: 712 ITENGYGKRTEAIEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVII 770

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
             ++  I +  R   GV++                 +   
Sbjct: 771 RTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEE 810


>gi|307565408|ref|ZP_07627897.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A]
 gi|307345858|gb|EFN91206.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A]
          Length = 854

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/773 (30%), Positives = 391/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++ T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MEDNQTIDHDRIMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++ E ++  +D+D VD  + +++  +EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLAKMGERVMDDIDKDTVDMVNNFDDTLTEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNP IS E+L++YI  PDFPTG  I    + +  +Y  
Sbjct: 181 GMATNIPTHNLSEVIDGCCAYIDNPAISTEELMQYIPAPDFPTGAYIY-GLQGVKNAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E G     IVVTEIPY V K++LIE IA+L+   ++  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEI-ESGETHDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANIILNKLFKMTALQSSFSVNCIALV-NGRPRLLNLQECIKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  IL+GLLIA  NIDE++ IIR    P     +   RF+
Sbjct: 358 EHRHDVTIRRTRFDLKKAQERAHILEGLLIACDNIDEVVHIIRASKTPSEAQTNLEKRFN 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+  E + L+   + +  +L++ ++    +  E+ ++
Sbjct: 418 LDELQSKAIVDMRLAQLTGLRMDQLHEEYEELMQTIKNLQEILDNPERCKEVMKNELYDI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE +        RRT              +     +P+ + IS+ G+I+           
Sbjct: 478 KEKYGDE-----RRTEIIPDEHE---FNAEDFYPNDPVVITISHLGYIKRTPLTDFKEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       +E D  +    A     +L  + +G+ Y +   ++  G    +  AIQ 
Sbjct: 530 RGGVGSKGARTREKDFTEYIYSATMHQTMLFFTKEGRCYWMKCYDIPEGDKSSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++ L     +             +  T  ++ V+ KG                G   + +
Sbjct: 590 MLSLEPGDAVNAFLRIRGLDNEEFLDTHYVVFVTKKGLVKKTLLRAYSRPRNNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISD 699
           +  +++  V    G D + +  +N +   F  + +  M R   GVR     + G   +  
Sbjct: 650 NDGDEVVDVRLTNGSDELIIADKNGRACRFHENNVRTMGRVSTGVRGMKLDEDGEDEVIG 709

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           ++     E  T +  +   Y +        L  RGG G        ++GK ++
Sbjct: 710 MVVVNDSENETVMVVSEEGYGKRSLVSDYRLTNRGGKGVKTLNITEKTGKLVA 762


>gi|300711736|ref|YP_003737550.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3]
 gi|299125419|gb|ADJ15758.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3]
          Length = 813

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/770 (32%), Positives = 400/770 (51%), Gaps = 33/770 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D  S    +    +  V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MSSDVPS--PNIDAARIDTVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMG+   +A +KS+ +VGE +G  HPHGD ++YD+LVR++Q F  RYPL+ GQGNFG+
Sbjct: 59  MHEMGVSSRSAHRKSSSVVGETMGDYHPHGDSAIYDTLVRMSQDFSMRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM+ ++E +L  ++++ VDF   Y++   EP V P+  PNLL NG+
Sbjct: 119 VDGDPAAAMRYTEARMSPISEELLTDIEKETVDFTANYDDRLEEPEVLPAAIPNLLVNGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGM+T++P HN++E+ +A + LID+PE SI  L+E++ GPDFPTG  IV  RE+I 
Sbjct: 179 SGIAVGMSTNVPPHNLREVIDATIHLIDDPECSIPDLMEHVKGPDFPTGANIV-GREAIH 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG  RVRA +   E       IV+TE+P+Q  KSRL+E+IAE +   +I  + D
Sbjct: 238 SAYTTGRGRLRVRAEFE-REQADKRERIVITELPFQQNKSRLVERIAENVNEGKIEGISD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   +     R  + D++  +  +   +E  F +    L     PQV+ L   
Sbjct: 297 LRDESDRDGIRIAIDLKRGANADVVE-NQLLEHHLERTFGVINLALVD-GQPQVLDLKET 354

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVM 417
           L+ ++ HR++V+ RRS + +   + R  IL+G L A  N+D ++ +IR  +        +
Sbjct: 355 LEHYVEHRKDVVRRRSEYDLGEAEDRAHILEGRLKALDNVDSVVELIRGAEDRNGAKEAL 414

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              F  +E Q + I+ ++L SL  LE  +I  E D L+ E E+++++L +  +    I  
Sbjct: 415 SDEFDFSEAQAEHIVRMQLGSLTSLERNEIDEEYDALVEEIERLETILANESELLGVIKE 474

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
           E+RE++E +        RRT+  E        L + +I +E   ++++   +++ +    
Sbjct: 475 ELREIREEYGD-----DRRTSIIE---GGDTVLHEDLIPEEDSLILVTEDDYVKRMPVSA 526

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HG 587
                     +   + KEGD +     A+T D +L  +  GKAY +   ++        G
Sbjct: 527 FDPQGRGGKGIIGANLKEGDRVSKVFRANTHDYLLCFTNHGKAYQIRGFDVPEMSRTARG 586

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++   ++DL+ ++++        +D    L +V+  G     E S        G     +
Sbjct: 587 KSAVNILDLDPDEELTAVVNTDDFDDEEFLTMVTENGYVKRTEASAFERVRSSGLIAASL 646

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              +++  V    G   + +   N   + F   +   M R  +GV     + GG S V  
Sbjct: 647 EEGDRLVDVTVTDGSADLLIATRNGMAIRFPESEARAMGRTARGVNGIKLQ-GGDSVVGL 705

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               E  + +      Y +           R G G +  K   R+G   +
Sbjct: 706 VTADESRSLLTITENGYGKRTPFSEYRTQSRYGKGLIDIKTGNRNGPVAA 755



 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 6/145 (4%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G A   P     +       +   I L     +V     D +  LL ++  G     
Sbjct: 668 TRNGMAIRFPESEARAMGRTARGV-NGIKLQGGDSVVGLVTADESRSLLTITENGYGKRT 726

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMS 682
             SE    +R GK  + + +  +   V  V      D + V+ ++ +++      +  + 
Sbjct: 727 PFSEYRTQSRYGKGLIDIKTGNRNGPVAAVESVSEDDDLVVMSDDAQIMRIHAADVSRVG 786

Query: 683 R-GKGVRLQSYKDGGISDVICFKIC 706
           R  KGV +           +     
Sbjct: 787 RNTKGVIVMRLAGDDRVASVDVIPE 811


>gi|149923365|ref|ZP_01911772.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1]
 gi|149815779|gb|EDM75303.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1]
          Length = 898

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/797 (30%), Positives = 387/797 (48%), Gaps = 59/797 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E+   +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++      A+
Sbjct: 1   MAESKSTLNIEDEMRSSFLDYAMSVIISRALPDVRDGLKPVHRRILYAMHQLKNTHTQAY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPL+ GQGNFG+IDGDS AA RYT
Sbjct: 61  KKSARVVGDVIGKYHPHGDSAVYDALVRLAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +++  VD+   Y+E++ EP V P+K PNLL NG  GIAVGMAT+IP
Sbjct: 121 EVRMQKLASELLADLEKQTVDWVPNYDEKELEPGVLPTKVPNLLLNGAVGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A++ALID+P I + +L  Y+ GPDFPTGG+I+     I  +Y  GRG  +V
Sbjct: 181 PHNLTELLDASIALIDDPSIGVAELCSYVKGPDFPTGGVIL-GTAGIRSAYLTGRGSVKV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR  +EE  +G   I+VTEIPYQV K+RLIE+IA L+  K++  + DI+D S      +
Sbjct: 240 RARCEIEEDKKGRESIIVTEIPYQVNKTRLIERIAGLVRDKKLEGISDIQDYSDRTGMRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +     +++  ++ +SD++T F +NM  +     P+V+ L+  L+ ++ HRR V+
Sbjct: 300 WIQVKKDHAAQIVLNKLYKMSDLQTSFGVNMIAIV-NGRPEVLNLEKCLRHFIDHRRTVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------- 415
            RR  + +     R EI++GL +A  +ID +I +IR    P                   
Sbjct: 359 TRRCRYELAKAMARREIVEGLGVAVDSIDRVIELIRGSKDPDEAKAKLMAEPLDGFAKFL 418

Query: 416 ------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                            + L E Q  AIL++RL+ L  LE  +++ E   L     +++S
Sbjct: 419 ERCERPAEEIEKANQGPYRLNERQAKAILDMRLQRLTGLERDKVEGEYRELCEIIGELES 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKS-------TDLGRRRTTFCEVSRADKATLQQAMIE 516
           +L    +    I  E+  ++  +             G + +   E+   +       ++ 
Sbjct: 479 ILTDPDKLMAVIREELLAIRYEYGDPEGRDSGDGAEGSKGSRRTELMADELEIQPIDLVA 538

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSAL---------HFKEGDSLKIALHAHTTDRILLLS 567
            E + V+I+ + +++ L +    +               + D +     A     +LL +
Sbjct: 539 DESMVVMITAQSYVKRLPTDEYRVQNRGGVGLKSGSRRDDDDQIIELFEASAHAFVLLFT 598

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY-----DSTCKLLVVSSK 620
             G+ +          +     +A+   +DL   + I+    Y     D    +++ S +
Sbjct: 599 NTGRVFRKRVFEFPLGTRGQRPKALVNFLDLKEGEQILEMVAYREEEVDDDHFVVLASRQ 658

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G       SE       G     V   + +       G   + +     + + F    + 
Sbjct: 659 GYIKRTSLSEFQNIRSSGLIAANVVEGDMLIDAKLTNGGCDIIMASREGQAIRFDEADVR 718

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL---TWIDSAGRSYNRSENDLLGWLGKRGG 735
            M R  +GVR    +DG     I     E      ++    + Y +           R G
Sbjct: 719 PMGRTARGVRGMGLRDGDEVVNILVLDRENEGEVGFLTVCEKGYGKRTPASEYRSQSRSG 778

Query: 736 VGSLVPKGFPRSGKFLS 752
           +G    K   R+GK + 
Sbjct: 779 LGLKTIKVSERNGKVVG 795



 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 16/215 (7%)

Query: 510 LQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
            ++  ++ +   V+ S +G+I+           S  L A +  EGD L  A   +    I
Sbjct: 641 YREEEVDDDHFVVLASRQGYIKRTSLSEFQNIRSSGLIAANVVEGDMLIDAKLTNGGCDI 700

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK----LLVVSS 619
           ++ S +G+A      ++         ++ +  L    ++V   V D   +     L V  
Sbjct: 701 IMASREGQAIRFDEADVRPMGRTARGVRGM-GLRDGDEVVNILVLDRENEGEVGFLTVCE 759

Query: 620 KGNAFIVEESEIIANTRKGKTF--LKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           KG       SE  + +R G     +KVS    + + +V     D + VV    K++   +
Sbjct: 760 KGYGKRTPASEYRSQSRSGLGLKTIKVSERNGKVVGMVKVREADQLMVVTSQGKIIRTPV 819

Query: 676 DQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
             I E+ R  +GVRL    D  +   +        
Sbjct: 820 AGISELGRATQGVRLIRLNDEEVVVGLARVDDPSD 854


>gi|55981324|ref|YP_144621.1| DNA gyrase subunit A [Thermus thermophilus HB8]
 gi|9622087|gb|AAF89614.1|AF167401_1 gyrase subunit A [Thermus thermophilus]
 gi|55772737|dbj|BAD71178.1| DNA gyrase subunit A [Thermus thermophilus HB8]
          Length = 805

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/757 (33%), Positives = 408/757 (53%), Gaps = 32/757 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   L++ ++ YA+S I +RA+PD+RDG KPV RRI+    + G+  G    KS
Sbjct: 3   QVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEV+GK HPHGD ++YD+LVR+AQP+  RYPLI GQGNFG+IDGD  AA RYTEAR
Sbjct: 63  AKIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++ +   +L  +D+D VDFR  Y+    EP V P+  PNLL NG SGIAVGMATS+P HN
Sbjct: 123 LSPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A+I+NP I++E+++ ++ GPDFPTGG +  S++ I E+Y  GRG  +VRA+
Sbjct: 183 LSEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGKL--SKKGIKEAYATGRGSLKVRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VEE       +VVTEIPYQV K+ LI +IA L+ AK+I  +  +RDES      +   
Sbjct: 241 VRVEE-KGQRPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P +++  ++  + ++T F +N+  +     P+V+ L  +++ +L HR+EV+ RR
Sbjct: 300 LKRGANPQVVLNQLYKHTALQTSFTVNLLAIVD-GEPKVLSLLDLMRHYLDHRKEVVRRR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAIL 432
           S F ++  + R  +L+GLLIA  +IDE+IA+IR  +         + RF L+E Q  AIL
Sbjct: 359 SLFELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMERFGLSEAQAQAIL 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  ++  E   L+ E  ++ ++L    +   ++  ++  VKE +  +   
Sbjct: 419 DMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEARLLAEVKADLLRVKEKYGDA--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALH 544
             RRT   E          + +IE EP+ + ++ +G+++ L   S          L A  
Sbjct: 476 --RRTLITEFEETFNP---EDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAGR 530

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602
            KE D       A   D +LL +  G+ Y L    L     +  G  ++ L+ L  ++++
Sbjct: 531 TKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARGVHVKSLLPLAEDEEV 590

Query: 603 VTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-G 658
                    D    L+  + +G        E     + G   +++   +++  V      
Sbjct: 591 AALLSVRGLDQEGYLVFATERGLVKRTALKEYQNLGQAGLIAIRLQEGDRLVGVALSDPE 650

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSA 715
           D   +  +  + + F ++++    R  +GV    +K  +  +  ++  K  E +  +  +
Sbjct: 651 DEAILATQEGQAIRFPLEEVRATGRDTQGVIGVRFKKPEDRVVSLVVVKPGEMVDLLSVS 710

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            R Y +        L  RGG+G +      + G+  +
Sbjct: 711 TRGYGKRTPLSEYPLQGRGGMGVITYAVSTKVGRLAA 747



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 7/157 (4%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLV 616
             D  +L + +G+A   P   + +     + +  +        +V+  V        LL 
Sbjct: 649 PEDEAILATQEGQAIRFPLEEVRATGRDTQGVIGVRFKKPEDRVVSLVVVKPGEMVDLLS 708

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           VS++G       SE     R G   +             L+    G+ + V+      + 
Sbjct: 709 VSTRGYGKRTPLSEYPLQGRGGMGVITYAVSTKVGRLAALLKVRGGEDLLVLSRRGLAIR 768

Query: 673 FSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
             + +I + SR   GVR+ +  +            E 
Sbjct: 769 TPVAEIRQYSRATAGVRVMNLPEDDEVASAFVVEEEK 805


>gi|162446894|ref|YP_001620026.1| DNA gyrase subunit A [Acholeplasma laidlawii PG-8A]
 gi|161985001|gb|ABX80650.1| DNA gyrase, subunit A [Acholeplasma laidlawii PG-8A]
          Length = 867

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/764 (30%), Positives = 391/764 (51%), Gaps = 29/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +   + + +K V++   ++  +L YA+S I  RA+P+ +DG KPV RRI++ M E  
Sbjct: 1   MSENTDKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD S+YD++VR+AQPF  R PL+ G GNFG++DGD 
Sbjct: 61  MYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +++ +D++ V+F D Y+  + EP V PS++PNLL NG++GIAV
Sbjct: 121 AAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  A +DNP+I++ +L++YI GPDFPTGG I+     + ++Y  
Sbjct: 181 GMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYIKGPDFPTGGQIL-GITGLRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E    +  I+ TEIPYQV K+ LIE+IAE++  K I  + D+RDES
Sbjct: 240 GKGIIAVRAQHEIVETKNRTELII-TEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +P + + +++  + ++T F +NM  L     P+++ L   L  ++
Sbjct: 299 NRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVD-GQPRLLSLKDALTHYI 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           AH+ E++ RR+ F ++  + R+ IL+ L+       N+ +II   +N +  +  +++ + 
Sbjct: 358 AHQIEIITRRTQFDLEKAEARMHILEALVKALNDVDNVIKIIKDAKNPEDARNNLIATYD 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            TE Q  +IL ++L+ L  LE  +I  E DNL  +  +   +L     +   I  E++E+
Sbjct: 418 FTEIQARSILTMQLQRLTGLEIDKIHEEADNLAHKITEYKQILGDEDLKIEIIKSELQEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K+ +                   D     + +I  E I V ++N G+I+ +         
Sbjct: 478 KDKYDDPR-------MSEVNLYEDLDIDNEDLIPVEDIVVTVTNNGYIKRMNLDEYKLQN 530

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +S +   + D ++      T D  L  +  G+ + L    L SG    +   I  
Sbjct: 531 RGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVFKLKGYTLPSGSRQSKGVPIVN 590

Query: 593 LIDLNHNQD---IVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            ++    +      T   +D     L  V+ +G       +      + G   + +  ++
Sbjct: 591 YLNFQPGEKLASFTTIKDFDAEDHYLFFVTKRGIVKRTHINNYKNIRQNGIIAISLREDD 650

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++ +     G  H+ +   N K + F    I E+ R   GVR     D            
Sbjct: 651 ELLVTKSTNGHKHILLGASNGKAIHFLETDIREIGRTATGVRGMDIPDDEEIVGFAVVDG 710

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                +      Y +  +     L  RGG G        ++GK 
Sbjct: 711 IEDDILVITENGYGKRTSITEYRLQNRGGKGVKTLNVTDKNGKL 754



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 100/277 (36%), Gaps = 19/277 (6%)

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
           ++    ++ +       + + +       S + +   I   +        +  +     T
Sbjct: 551 AMTSTHDFHLFFTNLGRVFKLKGYTLPSGSRQSKGVPIVNYLNF------QPGEKLASFT 604

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           T  +    D           +   V  ++    ++++ +   + A+  +E D L +    
Sbjct: 605 TIKDFDAEDHYLF----FVTKRGIVKRTHINNYKNIRQN--GIIAISLREDDELLVTKST 658

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLV 616
           +    ILL +++GKA      ++         ++ + D+  +++IV   V D     +LV
Sbjct: 659 NGHKHILLGASNGKAIHFLETDIREIGRTATGVRGM-DIPDDEEIVGFAVVDGIEDDILV 717

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLI 672
           ++  G       +E     R GK    +       K+K + KVT D  + VV +    + 
Sbjct: 718 ITENGYGKRTSITEYRLQNRGGKGVKTLNVTDKNGKLKTLRKVTNDEDIIVVSDRGITIR 777

Query: 673 FSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
             IDQI +  R  +GVR+ + K       I     + 
Sbjct: 778 MPIDQISQTKRATQGVRIITLKGDQKVSTIAIVDHQE 814


>gi|315222945|ref|ZP_07864824.1| DNA gyrase, A subunit [Streptococcus anginosus F0211]
 gi|315187895|gb|EFU21631.1| DNA gyrase, A subunit [Streptococcus anginosus F0211]
          Length = 815

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 395/760 (51%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD  AA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++   L+E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLCETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGA-LVMGKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FIIDVKRDASAHVILNNLFKLTQMQTNFSF-NMLAIQNGVPKILSLREILLAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +         ++R+ L+E Q 
Sbjct: 359 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMARYELSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+     +  +L   ++    I  E+ E+K  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLMKLIADLADILAKPERVVAIIKEELEEIKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          +     +
Sbjct: 479 E-----RRTEL--MVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQDEFTAQRRGGRGI 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T DR+L  +  G+ Y L    +       +   I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T       +D    L   +  G       +E     + G   L +  E+++  V 
Sbjct: 592 GETIQTIINVQAEHDDHSYLFFTTRYGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
              G   + +  +    + F+ +Q+  M R   GVR  + +           I +    +
Sbjct: 652 LTNGHADIIIGTKMGYAVRFNENQVRNMGRAATGVRGVNLRTNDYVVGASV-ISDNQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 VITEKGYGKRTLASEYATKGRGGKGMKTANITEKNGPLAG 750



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 6/181 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 L AL+ K+ D L      +    I++ +  G A       + +       ++  
Sbjct: 630 NIRQNGLKALNLKDEDELINVFLTNGHADIIIGTKMGYAVRFNENQVRNMGRAATGVRG- 688

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK---TFLKVSSEEKM 650
           ++L  N  +V A V     ++LV++ KG       SE     R GK   T         +
Sbjct: 689 VNLRTNDYVVGASVISDNQEVLVITEKGYGKRTLASEYATKGRGGKGMKTANITEKNGPL 748

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             ++ V GD  + V+     ++  ++  I +  R   GV++     G           E 
Sbjct: 749 AGLMAVNGDEDLMVITNTGVIIRTNVANISQTGRATLGVKVMRLDKGAQIVTFTSVAAEN 808

Query: 709 L 709
            
Sbjct: 809 E 809


>gi|254281687|ref|ZP_04956655.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B]
 gi|219677890|gb|EED34239.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B]
          Length = 865

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/800 (31%), Positives = 407/800 (50%), Gaps = 63/800 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++ T +   V  V++   L++ Y+ YA+S I  RA+PD+RDG KPVHRR++ AM+E+ 
Sbjct: 1   MADTPTQIAREVLPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS
Sbjct: 61  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM++VA  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEIRMSKVAHALLADLDKETVDFVDNYDGTERIPSVLPTRVPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+    LA +DN +I+I++L++YI GPDFPTG  I+  R  IV++YR 
Sbjct: 181 GMATNIPPHNMREVIAGCLAYLDNSDITIDQLMDYIPGPDFPTGA-IINGRAGIVQAYRT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  V    +G   I+V EIPYQ+ K+RLIE+IAEL+  K+I  + ++RDES
Sbjct: 240 GRGRIYVRARAEVVSDSKGKDTIIVHEIPYQLNKARLIERIAELVKEKKIEGITELRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   V+    R    D+++ +++  + +++   +NM  L     P+V+ L  ++  ++
Sbjct: 300 DKDGLRVVIELRRGEVGDVVLNNLYAQTALQSVVGMNMVALVD-GQPKVLNLKEMIAAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------- 412
            HRREV+ RR+ + ++    R  +L+GL +A  NIDE+I +I++                
Sbjct: 359 RHRREVVTRRTVYLLKKARERGHVLEGLAVALANIDEVIEMIKSSPTAADARERLIDAAW 418

Query: 413 ------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      ++   + L+  Q  AIL+LRL  L  LE  ++ 
Sbjct: 419 APGDVNAMLERAGAAACRPDDLDVCYGLVEGAYHLSPAQAQAILDLRLHRLTGLEHEKLL 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E  + L E      +L   ++    I  E+ E    F              E++ +   
Sbjct: 479 QEYADKLTEIADYLDILEDSERLKRVIREELEETVAEFGDER--------MTEITDSAHD 530

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTT 560
              + +I +E   V IS+ G+ ++                SA   K+ D ++  L A T 
Sbjct: 531 LTVEDLITEEDRVVTISHGGYAKTQPLTDYQAQRRGGTGRSATAVKDEDFVEHLLIASTH 590

Query: 561 DRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             IL  S  GK Y L   N+   S    G  +  L+ L+  + + +      Y++   + 
Sbjct: 591 STILCFSNLGKVYWLRVFNIPVASRNSRGRPMVNLLPLDDGERVTSILPVEGYEAGSYIF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + ++KG     E ++       G   +++   + +       G   V +     K + F+
Sbjct: 651 MATAKGTVKKTEMTQFARQRSVGLRAIELEEGDHLVGTAVTDGSCDVMLFSSEGKAVRFN 710

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
              +  M R  KGVR      G  S +      +    +  +   Y +        +  R
Sbjct: 711 EAAVRPMGRTAKGVRGIRLG-GDYSLISLIIPKQQGRILTVSENGYGKRSETADFPVRGR 769

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
           G +G +      R+G  + +
Sbjct: 770 GTMGVIAMSTSDRNGALVGA 789



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/389 (12%), Positives = 119/389 (30%), Gaps = 21/389 (5%)

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
            + +   +D  T     +++L      + +  + + +       E +   +         
Sbjct: 475 EKLLQEYADKLTEIADYLDILEDSERLKRVIREELEETVAEFGDERMTEITDSAHDLTVE 534

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
            +   +  ++   +     A  +     +         +   V     +    +      
Sbjct: 535 DLITEEDRVVTISHGG--YAKTQPLTDYQAQRRGGTGRSATAVKDEDFVEHLLIASTHST 592

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
            +       +      +  + S   +   +   +           D G R T+   V   
Sbjct: 593 ILCFSNLGKVYWLRVFNIPVASRNSRGRPMVNLL---------PLDDGERVTSILPVEGY 643

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +  +       K      +      +  +  SV L A+  +EGD L        +  ++L
Sbjct: 644 EAGSYIFMATAKG----TVKKTEMTQFARQRSVGLRAIELEEGDHLVGTAVTDGSCDVML 699

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
            S++GKA       +       + ++  I L  +  +++  +     ++L VS  G    
Sbjct: 700 FSSEGKAVRFNEAAVRPMGRTAKGVRG-IRLGGDYSLISLIIPKQQGRILTVSENGYGKR 758

Query: 626 VEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM 681
            E ++     R     + +S+ ++   +    +V  GD + ++      +   ID+I   
Sbjct: 759 SETADFPVRGRGTMGVIAMSTSDRNGALVGAEQVWDGDEIMLISNQGTAVRTRIDEISLQ 818

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGL 709
            R  +GVR+   +D      I     +  
Sbjct: 819 GRNTQGVRVIRTRDEESLVSISRIAEDDD 847


>gi|284036916|ref|YP_003386846.1| DNA gyrase subunit alpha [Spirosoma linguale DSM 74]
 gi|283816209|gb|ADB38047.1| DNA gyrase, A subunit [Spirosoma linguale DSM 74]
          Length = 838

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/776 (30%), Positives = 408/776 (52%), Gaps = 40/776 (5%)

Query: 6   ISNSNTLVEE--NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +++    +E   N+  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRR++  M+E
Sbjct: 1   MADETPDLESPSNIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLFGMAE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+++    KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RYPL+ GQGNFG+IDG
Sbjct: 61  LGVNYNKPHKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DS AA RYTEAR+ ++A+ +L  + ++ VDF+  +++   EP V P+K PNLL NG+SGI
Sbjct: 121 DSPAAMRYTEARLKRIADELLTDIYKETVDFQGNFDDSLQEPTVMPAKLPNLLLNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT++  HN+ E+ +  LA ++N EI++E+L++++  PDFPTG  I    E +  ++
Sbjct: 181 AVGMATNMAPHNLTEVVDGILAYLENSEITVEELMQFVKAPDFPTGATIY-GMEGVKSAF 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG   +RA   + E  RG   I+VT++PY V K+ ++EK AELI  K+I  +   RD
Sbjct: 240 KTGRGRVVMRAHATI-EENRGKTQIIVTDVPYMVNKAVMLEKTAELINDKKIEGIMAFRD 298

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  D   V++   +   P++++ +++  + +++ F +N   L     P ++ L  ++K 
Sbjct: 299 ESDRDGLRVVYDLRKDAIPNVVLNNLYKHTALQSSFSINNVALVK-GRPMMLNLKDMMKY 357

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           ++ HR EV+ RR+ + ++  ++R  IL+GLLIA  NID +I +IR+   P   +  ++ R
Sbjct: 358 YVEHRFEVITRRTQYELREAEKRAHILEGLLIALDNIDAVIELIRSSRDPEVARTGLMER 417

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSL++ Q  AIL +RL+ L  LE  ++++E D L+ E   +  +L S +++   I  E+ 
Sbjct: 418 FSLSDLQAKAILEMRLQRLTGLERDKLQAEYDELMTEIADLKEILASEERKRQVIKEELT 477

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------ 534
           +++  +        RRT        D      ++I  E + + IS+ G+I+         
Sbjct: 478 DIRARYGDE-----RRTEI--NPLGDGNISDLSLIADEDMVITISHEGYIKRTPTTEYRS 530

Query: 535 --SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AI 590
                V   A   KE D  +    A   + +L  +  G+ Y LP   L  G    +   +
Sbjct: 531 QGRGGVGAKAASTKEEDFTEHLFTATMHNTLLAFTQKGRMYWLPVYELPEGSRTSKGRPL 590

Query: 591 QLLIDLNHNQDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
              I++  +  +                   +++ + KG              + G   +
Sbjct: 591 ANFINIESDDKVRAVINVTDLKNEDYINNNYIVMCTRKGTIKKTMLEAYSRPRQNGIIAI 650

Query: 643 KVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---- 696
            +  ++++  V    GD  + +     K + F   ++  M R   GVR  S  +      
Sbjct: 651 TIDEDDQLLGVCMTNGDNDIVIASSAGKAVRFHESRVRPMGRTAAGVRGISLDEEDPTDH 710

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  ++C    +    +  +   Y +  +     +  RG  G    K   + G+ ++
Sbjct: 711 VIGMVCIS-SQDAQLLVVSQNGYGKRSDIDGYRITNRGAKGVGTLKITEKVGRLVA 765



 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 9/201 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG---KAYTLPAGN 579
            I         +     + A+   E D L      +  + I++ S+ G   + +      
Sbjct: 630 TIKKTMLEAYSRPRQNGIIAITIDEDDQLLGVCMTNGDNDIVIASSAGKAVRFHESRVRP 689

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           +         I L  +   +  I    +     +LLVVS  G     +        R  K
Sbjct: 690 MGRTAAGVRGISLDEEDPTDHVIGMVCISSQDAQLLVVSQNGYGKRSDIDGYRITNRGAK 749

Query: 640 TFLKVSSEE---KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
               +   E   ++  V+ V   D + ++ ++   +   +D I  + R  +GVRL    +
Sbjct: 750 GVGTLKITEKVGRLVAVLDVADNDDLMIINKSGIAIRTPVDAINVIGRNTQGVRLIKLNE 809

Query: 695 GGISDVIC-FKICEGLTWIDS 714
           G     +   K  EG     +
Sbjct: 810 GDEISSVTKIKKEEGEEIATA 830



 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 77/290 (26%), Gaps = 21/290 (7%)

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
              +  +   +   + +L + E+    R                +     I    L++  
Sbjct: 556 TMHNTLLAFTQKGRMYWLPVYELPEGSRTSKGRPLANFINIESDDKVRAVINVTDLKN-- 613

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           +         +       +K      S  +Q   IA  I E  ++       G       
Sbjct: 614 EDYINNNYIVMCTRKGTIKKTMLEAYSRPRQNGIIAITIDEDDQLLGVCMTNGDNDIVIA 673

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             +       +  +                    +    +S       D +   +   + 
Sbjct: 674 SSAGKAVRFHESRVRPM-------------GRTAAGVRGISLDEEDPTDHVIGMVCISSQ 720

Query: 561 D-RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           D ++L++S +G                 + +  L        +V          L++++ 
Sbjct: 721 DAQLLVVSQNGYGKRSDIDGYRITNRGAKGVGTLKITEKVGRLVAVLDVADNDDLMIINK 780

Query: 620 KGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV---TGDHVAVV 664
            G A       I    R   G   +K++  +++  V K+    G+ +A  
Sbjct: 781 SGIAIRTPVDAINVIGRNTQGVRLIKLNEGDEISSVTKIKKEEGEEIATA 830


>gi|330995639|ref|ZP_08319537.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841]
 gi|329574698|gb|EGG56259.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841]
          Length = 855

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/759 (30%), Positives = 398/759 (52%), Gaps = 21/759 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  V++   + + Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LDQDRIIKVNIETEMRKSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMRELGNTHDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK ARIVGEV+GK HPHGD SVY +LVR+AQ +  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 62  YKKCARIVGEVLGKYHPHGDSSVYGALVRMAQEWSMRYTLVDGQGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+  + E ++  ++++ VD  + +++   EP V P+K PNLL NG SGIAVGMAT+I
Sbjct: 122 TEARLQLMGEAMMDDLEKETVDMMNNFDDTLREPTVMPTKIPNLLVNGASGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I I+ L+E++  PDFPTGG  +   + + E+Y  GRG   
Sbjct: 182 PTHNLGEVIDACVAYIDNRDIDIDGLMEHVKAPDFPTGG-FIYGMQGVREAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  + E G     IV+TEIPY V K+ LI++IA+L+  K+I  + +  DES  +   
Sbjct: 241 MRARAEI-EPGENHDKIVITEIPYGVNKAELIKQIADLVNEKKIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + ++++  +F ++ ++T F +N   L     P+++ L   +  ++ HR +V
Sbjct: 300 IVVDVKRDANANVVLNKLFKMTPLQTSFSVNCIALVK-GRPRLLSLKDCISNFVNHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQV 428
           + RR+ + ++  + R  IL+GL+IA  NIDE++ IIR+   P+     ++SRF L E Q 
Sbjct: 359 VIRRTQYDLRKAEERAHILQGLIIASDNIDEVVHIIRSAQNPQAAIEGLMSRFELDEVQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+++E D LL + E    +L+        I  E+ EVKE F  
Sbjct: 419 KAIVEMRLRQLTNLMQEQLRNEYDELLKQIEYFKQILSDEDLCMKVIKDELIEVKEQFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  +  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDEMVITISHMGYIKRTPLAEFRAQARGGVGSKGTSTRDT 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + +L  +  G+ + +    +  G  + +  AIQ +++++ +  I    
Sbjct: 539 DFVEYIYPATMHNTMLFFTQKGRCFWMKVYEIPEGAKNSKGRAIQNMLNIDPDDAINVCL 598

Query: 607 VYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
              +        +  ++  +  G        E       G   + +  ++++  V    G
Sbjct: 599 RIKNLNDAEFCRSHYVVFCTKNGIIKKTCLQEYSRPRANGVNAITIREDDRVIGVRLTNG 658

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
           +  + +   N + + F   ++  M R   GVR  +  + G   +  ++C    +  T + 
Sbjct: 659 ENEIIIANRNGRAIRFHESKVRAMGRTATGVRGMTIDEDGSDEVVGMVCVNDPQTETIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +  +     +  RG  G        ++GK ++
Sbjct: 719 VSEQGYGKRSDIEDYRVTNRGAKGVKTLNITEKTGKLVA 757


>gi|218887174|ref|YP_002436495.1| DNA gyrase subunit alpha [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758128|gb|ACL09027.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 812

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/756 (33%), Positives = 405/756 (53%), Gaps = 29/756 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + VS+   L + YL Y+LS I  RAIPD RDG KPVHRRI+ A  E+G  +    KKSAR
Sbjct: 3   QQVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQHELGNGYTRPPKKSAR 62

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYTE RM+
Sbjct: 63  VVGDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 122

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A   L  +D++ VDFR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 123 RLAGEFLADIDKETVDFRPNYDNTLLEPSVLPTKVPNLLLNGSSGIAVGMATNIPPHNLG 182

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C A L ++D P  ++E L++++ GPDFPT G +    + + ++Y  GRG  +VR +  
Sbjct: 183 ELCGALLHIVDEPGCTVEDLMDHVKGPDFPTAGFVYAG-QGLYDAYTTGRGTVKVRGKVE 241

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +EE  +G   IV+ EIP+ + KS L+EKIA L+  ++I  + D+RDES      V+    
Sbjct: 242 IEERKKGLQAIVIREIPFALNKSSLVEKIAALVNERKIDGVADLRDESDRKGIRVVIDLK 301

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   PD+++ +++  + +E+ F +NM  +  G  PQ++ L   L+ +L HRREV+ RR+ 
Sbjct: 302 RGTIPDIVVNALYKYTPLESSFGINMLAVV-GNRPQLLNLKQALEIFLEHRREVIIRRTR 360

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNL 434
           + ++  + R  IL+GL IA  NIDE++A+IR    P+    +      L+E Q  AIL++
Sbjct: 361 YDLRKAEARAHILEGLRIALDNIDEVVALIRASKTPQDAKDALMGRFTLSEAQAQAILDM 420

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE  ++  E + LL + E   S+L + +   + I  EI E+++ F+      +
Sbjct: 421 RLQRLTNLEHEKLIEEYNELLKKIEFFRSVLENPEVLRSVIREEIGELRDTFAT-----K 475

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT   E          + +I  E + + +S RG+I+          +     ++ +H  
Sbjct: 476 RRTEVLE--EELDGIDIEDLIPDEDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGVHTS 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D ++  L       +LL +  G+ + +    +  G    +   I  L+ L+ ++ +  
Sbjct: 534 EDDFVQDFLTTTNHQYLLLFTNHGRMHQIKVHRVPEGSRTAKGVHIANLVQLDKDELVTN 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                 +      L V+ +G       S      + G   + +  ++++ +V +V    H
Sbjct: 594 VLTVREFAEDRYFLFVTRRGMVKRSSASLYAKCRKTGLIAVGLRPDDELIMVREVDEHCH 653

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT--WIDSAGR 717
           + +   +   + F  + +  M R   GV+  + +             E  T   +  +  
Sbjct: 654 IVLTTGDGMAIRFQCEDVRPMGRSATGVKGIALRGKDRVVACVILAEEDTTSMIMSVSAN 713

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +     L  +  RGGVG    K  P++G  + +
Sbjct: 714 GFGKRTKADLYRVQSRGGVGVKNFKVTPKTGDVIGA 749



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 66/187 (35%), Gaps = 13/187 (6%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A+  +  D L +         I+L + DG A      ++         +   I L  
Sbjct: 630 GLIAVGLRPDDELIMVREVDEHCHIVLTTGDGMAIRFQCEDVRPMGRSATGV-KGIALRG 688

Query: 599 NQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMK 651
              +V   +    D+T  ++ VS+ G     +       +R G           + + + 
Sbjct: 689 KDRVVACVILAEEDTTSMIMSVSANGFGKRTKADLYRVQSRGGVGVKNFKVTPKTGD-VI 747

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
             + V  D  + ++    K+L   ++ +  + R  +GVRL    +G +  V+ F   +  
Sbjct: 748 GAMPVRDDDALVLLTSTNKILRMGLNDVRSVGRATQGVRLVRLDEGAL--VVGFDRIDER 805

Query: 710 TWIDSAG 716
             +D   
Sbjct: 806 EVVDGEE 812


>gi|94971797|ref|YP_593845.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345]
 gi|94553847|gb|ABF43771.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345]
          Length = 865

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/790 (29%), Positives = 394/790 (49%), Gaps = 61/790 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             +N++ +++   ++  YL Y++S I  RA+PD+RDG KPVHRRI++AM +MGL      
Sbjct: 19  NPQNIQPINIEEEMKRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMHDMGLLHNRKH 78

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            K A++VGEV+GK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG++DGD  AAYRYT
Sbjct: 79  VKCAKVVGEVLGKYHPHGDSAVYDAMVRMAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYT 138

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARMT +AE +L  +D+D VDF   +++  +EP++ P+K PNLL NG++GIAVGMAT+IP
Sbjct: 139 EARMTAIAEELLADIDKDTVDFVANFDDTSAEPLLLPTKVPNLLINGSNGIAVGMATNIP 198

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI +A + +++NP+ +++ +L+++ GPDFPTGG  +  +  I  +Y+ GRG F +
Sbjct: 199 PHNLTEIVDACITIVNNPKSTLDDVLKFVQGPDFPTGG-FIHGKGGIKNAYQNGRGRFMM 257

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  VE +      IVVTEIPYQV KS LI+KIA+L+  K I  + D+RDES  D   +
Sbjct: 258 RAKVAVEHL-PNKDAIVVTEIPYQVNKSTLIKKIADLVNDKTIDEISDVRDESDRDGMRI 316

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    RS  P++++  ++  + M+  F +    +     P+ M L   L  ++ HR +V+
Sbjct: 317 VIELKRSAQPEIVLNQLYKHTQMQESFSMIFLAVV-NNQPKEMGLVQALNHFIDHRIDVV 375

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------- 413
            RR+ + +Q    R  IL+G L+A  ++D +IAIIR                        
Sbjct: 376 RRRTFYLLQKAKDREHILEGYLMALDHLDNVIAIIRGSSNRADARENLVAYFTGKKITIN 435

Query: 414 ----KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                P +      +  Q DAIL L+L  L +L   +I SEL ++     + +S+L S K
Sbjct: 436 TTGKAPKVDPEKPFSTRQADAILELQLHRLTRLSIDEITSELKDVRERIAEYESILASEK 495

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +  + I  E+ ++++ +        RRT   +          + +I  E + V +S+ G+
Sbjct: 496 KLRSVIVKELEQIRKDYGDE-----RRTIIQD---EAAELSLEDLIADEQVAVTVSHSGY 547

Query: 530 IRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           ++     +             +  ++ D +++   A T   +L+ +  G+ Y L    + 
Sbjct: 548 LKRTPISTYRQQRRGGTGRKGMSTRDEDFVEMMFVASTHAYLLIFTNTGRVYWLKVYEVP 607

Query: 582 SGRG--HGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT 635
                  G+ I  L+ L   + +          + +  +   + KG        +     
Sbjct: 608 EIAAAGKGKHIGNLVALQPGESVRAILPVKSLEEESRYVFFTTRKGTVKKTALVDFSNVM 667

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
            +G   + +  ++++        + +  +       + F    +  M R   GVR     
Sbjct: 668 ARGIIAIGIDKDDELVAAQLTDSNQIVFLASHEGLAIRFDEADVRIMGRPAYGVRGMDIG 727

Query: 694 DGGISDVICFKICE-----------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                  +     E               +      Y +  +     L  RGG G +  K
Sbjct: 728 AKDYIVGMAITPKERKKGKNGGADTANLILSVTENGYGKRTDVDEYRLQTRGGKGVINVK 787

Query: 743 GFPRSGKFLS 752
              R+GK ++
Sbjct: 788 TTERNGKVVA 797



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 610 STCKLLV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVV 664
            T  L++ V+  G     +  E    TR GK  + V + E+   +  ++ VT D    V+
Sbjct: 751 DTANLILSVTENGYGKRTDVDEYRLQTRGGKGVINVKTTERNGKVVAIMLVTEDAEAMVI 810

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            +  K++  S D I E  R  +GVRL   + G           + 
Sbjct: 811 SQYGKIIRTSTDSIREAGRSTQGVRLLHLEPGDKVAAAVVIPDDE 855


>gi|300814727|ref|ZP_07094975.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511114|gb|EFK38366.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 809

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/758 (32%), Positives = 403/758 (53%), Gaps = 14/758 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++    E  +  V +   +   YL Y++S I  RA+PD+RDG KPVHRRI++ MSE+ 
Sbjct: 1   MTDTKEF-ENGIFDVDISKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELN 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  G ++KKSAR+VG+V+GK HPHGD S+Y++ VRLAQ F  RYPL+ GQGNFGNIDGD 
Sbjct: 60  LVSGGSYKKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDG 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE +MT++AE +L+ +++D V+F   ++ +  EP + PS+FPNLL NG+SGIAV
Sbjct: 120 AAAMRYTEVKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+ +  +  ID+ +ISI  L E I GPDFPTG  ++  R+ I ++Y+ 
Sbjct: 180 GMATNMPPHNMNEVIDGIVKYIDDDDISISDLQEVIKGPDFPTGA-LIMGRDGINKAYKT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA   + E  +G   I++TE+PYQV KS L+ KIAEL   K I  +  I D S
Sbjct: 239 GRGKITVRAVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSS 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    ++    +  + ++++  ++  + ++  + +    L     PQ++ L  +++ ++
Sbjct: 299 NKRGIRIVIDLKKDANANVVLNKLYKETQLQITYGIINLALV-NGRPQILNLKELIRYYV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ EV+ RR+ F +   + R  I++GL IA  NID +I IIR+              FS
Sbjct: 358 DHQVEVITRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKFDREFS 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q  AIL++RL+ L  LE  ++++E D LL + ++   +L +       I  E+ E+
Sbjct: 418 LTQIQSQAILDMRLKRLTGLEREKLQNEYDKLLEDIKRFKEILENNHVLMELIKTELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ +        + +                +   +   +     G  +  K     ++A
Sbjct: 478 KDKYGDLRRTVIKSSESDIDIEDIIKEEDVIITLTQFGYIKRMPEGTYKPQKRGGRGITA 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           L  KE D +K      T DR+L  +  GK Y L A  +     + +  A+  L++L+  +
Sbjct: 538 LTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFEVPEAGRNAKGTAVVNLLNLDKGE 597

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I +      +D    LL+V+ KG        E     + G   +K+  ++K+  V  V 
Sbjct: 598 KITSVINVEEFDPDHYLLMVTEKGLIKKTSNKEFKNIRQNGLIGIKLRDDDKLISVHLVR 657

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           GD  + +V +  K + FS D++ +  R   GV+  +  +     V    + +G   +  +
Sbjct: 658 GDEEIILVTKEGKSIRFSTDELRDQGRNTMGVKSMNLDEDDTI-VSSDIVGDGNYLLTVS 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +           RGG G    K   ++GK  ++
Sbjct: 717 ENGFGKLTELKEYRPQNRGGKGIFTYKISEKTGKVSAA 754



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 6/181 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                         L  +  ++ D L         + I+L++ +GK+       L     
Sbjct: 625 KTSNKEFKNIRQNGLIGIKLRDDDKLISVHLVRGDEEIILVTKEGKSIRFSTDELRDQGR 684

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           +   ++ + +L+ +  IV++ +      LL VS  G   + E  E     R GK      
Sbjct: 685 NTMGVKSM-NLDEDDTIVSSDIVGDGNYLLTVSENGFGKLTELKEYRPQNRGGKGIFTYK 743

Query: 646 SEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
             EK   V   +     D + ++ ++  ++   ID I   SR   GV+L +  D  I  +
Sbjct: 744 ISEKTGKVSAASVVNKSDDIMLIADSGIIIRLLIDDISVTSRNTMGVKLMNLNDSKIVAI 803

Query: 701 I 701
            
Sbjct: 804 A 804


>gi|307706659|ref|ZP_07643466.1| DNA gyrase, A subunit [Streptococcus mitis SK321]
 gi|307618114|gb|EFN97274.1| DNA gyrase, A subunit [Streptococcus mitis SK321]
          Length = 822

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 400/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----QRRTEL--MVGEVLSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASV-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITDKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGSLAG 750


>gi|289167850|ref|YP_003446119.1| DNA gyrase, subunit A [Streptococcus mitis B6]
 gi|288907417|emb|CBJ22254.1| DNA gyrase, subunit A [Streptococcus mitis B6]
          Length = 822

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 401/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +  +      +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----QRRTEL--MVGEVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 SESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GV+  + +DG         I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSTVRGMSRIATGVKGVNLRDGDTVVGASV-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSG 750


>gi|282878900|ref|ZP_06287664.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310]
 gi|281298899|gb|EFA91304.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310]
          Length = 857

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/759 (29%), Positives = 381/759 (50%), Gaps = 36/759 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +       +KK AR+
Sbjct: 2   KINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGISNTSDKPYKKCARV 61

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDSAAA RYTE R+++
Sbjct: 62  VGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRLSK 121

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           + E ++  +D+D VD  + +++   EP V P++ PNLL NG +GIAVGMAT++P+HN++E
Sbjct: 122 MGEHVMDDLDKDTVDMANNFDDTLQEPTVMPTRIPNLLVNGGNGIAVGMATNMPTHNLRE 181

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + E   A IDNPEI +++L+++I  PDFPTG  I    + + ++Y  GRG   +RA+  +
Sbjct: 182 VIEGCCAYIDNPEIELDELMKHIQAPDFPTGAYIY-GLQGVKDAYETGRGRIIIRAKAEI 240

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E       IVVTEIPY V K +LIE IA L+   ++  + ++ DES      ++    R
Sbjct: 241 -ESDESHDKIVVTEIPYGVNKQQLIEYIAALVKEGKLDGISNVNDESGRQGMRIVIDIKR 299

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + ++++  +F ++ +++ F +N   L     P+++ L   +K ++ HR +V  RR+ F
Sbjct: 300 DANANVILNKLFKMTALQSSFSVNNIALVK-GRPRLLSLKECVKYFVEHRHDVTIRRTKF 358

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLR 435
            ++    R  IL+GL+IA  NIDE++ IIR    P     +   RF L   Q  AI+++R
Sbjct: 359 ELKKAQERAHILEGLIIACDNIDEVVHIIRGSKTPSEAQTNLEKRFDLDNLQSKAIVDMR 418

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  L   Q+ +E D L      ++++L+  +     +  E+ EVKE +        R
Sbjct: 419 LSQLTGLRMDQLHAEYDELEKLIAYLENILSDPELCKKVMKDELNEVKEKYGD-----DR 473

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKE 547
           RT              +     +P+ + +S+ G+I+              V       ++
Sbjct: 474 RTKIIPDEHE---FNAEDFYPNDPVVITVSHLGYIKRTPLSDFREQARGGVGSKGATHRD 530

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D  +    A     +L  +  G+ Y L   N+  G    +  AIQ L++++ +  I   
Sbjct: 531 QDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGAKDSKGRAIQNLLNIDSDDAINAI 590

Query: 606 F--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                     + ++  ++  +  G                G   + ++  +++  V    
Sbjct: 591 LRLRGLNDEEFINSHYVVFATKNGTVKKTSLEAYSRPRTNGVIAINIAEGDEVVDVRLTN 650

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG--ISDVICFKICEGLTWID 713
           G+  + +   N + + F  + +  M R   GVR     DG   +  +I        T + 
Sbjct: 651 GENELIMANRNGRAVRFDENTVRTMGRTATGVRGMRLDDGDDAVVGMIVVNDPVNETVMV 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +   Y +           RGG G        ++G+ ++
Sbjct: 711 VSENGYGKRSLVEDYRKTNRGGKGVKTLSITDKTGRLVA 749



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 95/279 (34%), Gaps = 16/279 (5%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             + +  +           +  +    +   +   I   +  +    + +  L  R    
Sbjct: 540 ATMHQTMLFFTKKGRCYWLKCYNIPEGAKDSKGRAIQN-LLNIDSDDAINAILRLRGLND 598

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            E   +            +  TV  ++       +++   + A++  EGD +      + 
Sbjct: 599 EEFINSHYVVF-----ATKNGTVKKTSLEAYSRPRTN--GVIAINIAEGDEVVDVRLTNG 651

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVV 617
            + +++ + +G+A       + +       ++ +   + +  +V   V +      ++VV
Sbjct: 652 ENELIMANRNGRAVRFDENTVRTMGRTATGVRGMRLDDGDDAVVGMIVVNDPVNETVMVV 711

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIF 673
           S  G        +     R GK    +S  +   ++  +  VT D  + ++ ++   +  
Sbjct: 712 SENGYGKRSLVEDYRKTNRGGKGVKTLSITDKTGRLVAIKNVTDDNDLMIINKSGITIRL 771

Query: 674 SIDQIPEMSRG-KGVRLQSY-KDGGISDVICFKICEGLT 710
           ++ +   M R  +GVRL +  K   +   +C  +   L 
Sbjct: 772 AVSECRVMGRATQGVRLINLSKKNDVIASVCKTMSSELE 810


>gi|229824640|ref|ZP_04450709.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271]
 gi|229786011|gb|EEP22125.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271]
          Length = 838

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/758 (31%), Positives = 392/758 (51%), Gaps = 14/758 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S      N + V+L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+EMG
Sbjct: 1   MSESFDHTPHNYEVVNLSNEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMNEMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD ++Y+++VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D VDF+D Y++E+ EPV  PS+FPN+L NG +GIAV
Sbjct: 121 AAAMRYTEARMSKIAMEMLKDINKDTVDFKDNYSQEEKEPVTLPSRFPNVLVNGAAGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E  +A   L+ NP++S+ +L+E + GPDFPTGG IV  +  I ++Y+ 
Sbjct: 181 GMATNIPPHNLGETIDALSLLMKNPDVSVNELMEALPGPDFPTGG-IVMGKSGIRKAYQT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR+R  +E++      IVVTEIPY V K++L+E+IAEL   K+I  +  + DES
Sbjct: 240 GKGKIIVRSRVEIEQMAHDKERIVVTEIPYGVNKAKLVERIAELAREKKIEGITYVADES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R    ++++ +++  + ++  F  NM  +    VP++M L  IL ++L
Sbjct: 300 GREGMRIVVEVRRDTSANVVLNNLYKYTALQVTFGFNMLAIDK-GVPKIMSLKEILTKYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            ++ EV+ RR+ F  +  + R  IL+GL  A   IDEIIAIIR        K  ++ RF 
Sbjct: 359 EYQIEVIRRRTEFEKRKAEDRAHILEGLRKALDFIDEIIAIIRGSHDTEVAKAQLIERFE 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +  Q  AIL++RL  L  LE  +I++E ++L+    ++  +L+S       I  E+ ++
Sbjct: 419 FSPIQAQAILDMRLARLTGLEREKIEAEYNDLMELIRRLTEILSSEANIMAIIEDELADI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           K  F        R      +   D    +  +I       +    +   +        + 
Sbjct: 479 KNRFPGERRTELRVGELTSIEDEDLIEEEDVLIALTSNGYIKRMTQDEFQVQNRGGRGVK 538

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   + D+++  +   T D +L  +  GK Y     ++       +   +  L+++   
Sbjct: 539 GMGMSDNDNIQTLVSCSTHDSLLFFTNKGKVYQSKGYDIPEYGRTAKGIPVVNLLNIEKE 598

Query: 600 Q---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           +   +I+     D    L  V+  G     + S        G   L +  ++++  V+  
Sbjct: 599 EYVKEIIVLHPSDEDQYLFFVTKNGIVKRSDVSAYANIRNNGLIALNMREDDELINVLVT 658

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            G   + +   N   + F+      M R   GVR    ++G           E    +  
Sbjct: 659 NGQQNIIIGSHNGYAMTFAETDARIMGRTATGVRGMKLREGDYVVGAAVLNPES-NVLVV 717

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             R Y +        +  RGG G        +SG+   
Sbjct: 718 TERGYGKQTPASEYAVKNRGGKGIKTSNISAKSGQLAG 755



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 82/231 (35%), Gaps = 16/231 (6%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E     K  +     +++     ++  G ++     +        L AL+ +E D L  
Sbjct: 595 IEKEEYVKEIIVLHPSDEDQYLFFVTKNGIVKRSDVSAYANIRNNGLIALNMREDDELIN 654

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            L  +    I++ S +G A T    +          ++ +  L     +V A V +    
Sbjct: 655 VLVTNGQQNIIIGSHNGYAMTFAETDARIMGRTATGVRGM-KLREGDYVVGAAVLNPESN 713

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENR 668
           +LVV+ +G       SE     R GK      +   S  ++  +V   GD  + V+ +  
Sbjct: 714 VLVVTERGYGKQTPASEYAVKNRGGKGIKTSNISAKSG-QLAGIVSTEGDEDLMVMTDQG 772

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC--FKICEGLTWIDSAG 716
            ++ F+I  I   SR   GV++    DG     I    K  E    +    
Sbjct: 773 VVIRFNIASISVTSRATLGVKMIRLDDGAKVSSITKIMKTGEETQELAETE 823


>gi|118574934|gb|ABL07044.1| DNA gyrase subunit A [Arcobacter skirrowii]
          Length = 857

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/764 (33%), Positives = 407/764 (53%), Gaps = 31/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  +++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ L  
Sbjct: 2   ENLFENQDIIDINIEDSVKTSYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG++DGDSAAA
Sbjct: 62  KVAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMREPAVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A L LIDNP      L+E+I GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLDAILHLIDNPTAEAIDLMEFIQGPDFPTGGTIF-GRRGIIDAYTTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA+  + E       IV+ E+PYQV K+RLIE+IA+L   K+I  + ++RDES  +
Sbjct: 241 RVKIRAKHHI-ESKSKKDVIVIDELPYQVNKARLIEQIADLAKDKQIEGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKDAMAEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPEILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR     +    +   RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRASANDQEAKDNLSSRFGLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+   ++++ +L S  +    I  E+ E+KE 
Sbjct: 419 IQAQAILDMRLGRLTGLQRDKLEAEYQELMILIDQLELILRSEDRLNEIIKEELNEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           FS       RRT   +   +      + +I  EP+ V I++ G+            K   
Sbjct: 479 FSNP-----RRTEIED---SYDEIDVEDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +        G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEGSRTAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D    L   +  G       SE       G   + +  ++++  
Sbjct: 591 LRADEKIMAIIPTSDFDEAKSLTFFTKNGIVKRTSLSEFSNIRSNGVRAIVLDDDDEIVT 650

Query: 653 VVK--VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEG 708
                V   ++ V     + + F +D+  E  R  +GVR   +K D  I         E 
Sbjct: 651 AKIATVDTKYLMVFTSLGQCIRFEVDKAREQGRSTRGVRAIKFKIDSDIVVDAEIIDSED 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  + +   +        L  R G G +  K  P++G  + 
Sbjct: 711 QEILTVSEKGIGKRTTVEEYRLTNRAGSGVIAMKLSPKTGNVIG 754



 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 3/121 (2%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               IL +S  G                G  +  +       +++   + D T  L++++
Sbjct: 709 EDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVIAMKLSPKTGNVIGEVLVDDTQDLMLLT 768

Query: 619 SKGNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI 675
           S G    V+   I        G   + +  ++K+  + K    D    + E   ++ ++ 
Sbjct: 769 SIGKMIRVDMQTIRKAGRNTSGVIIVNMDKDDKVVSIAKCPKEDEEIELDEFGNVIRYNE 828

Query: 676 D 676
           D
Sbjct: 829 D 829


>gi|332879627|ref|ZP_08447322.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682593|gb|EGJ55495.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 855

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/759 (30%), Positives = 398/759 (52%), Gaps = 21/759 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  V++   + + Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LDQDRIIKVNIETEMRKSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMRELGNTHDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK ARIVGEV+GK HPHGD SVY +LVR+AQ +  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 62  YKKCARIVGEVLGKYHPHGDSSVYGALVRMAQEWSMRYTLVDGQGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+  + E ++  ++++ VD  + +++   EP V P+K PNLL NG SGIAVGMAT+I
Sbjct: 122 TEARLQLMGEAMMDDLEKETVDMMNNFDDTLREPTVMPTKIPNLLVNGASGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I I+ L+EYI  PDFPTGG  +   + + ++Y  GRG   
Sbjct: 182 PTHNLGEVIDACVAYIDNRDIDIDGLMEYIKAPDFPTGG-FIYGMQGVRDAYETGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  + E G     IV+TEIPY V K+ LI++IA+L+  K+I  + +  DES  +   
Sbjct: 241 MRARAEI-EPGENHDKIVITEIPYGVNKAELIKQIADLVNDKKIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + ++++  +F ++ ++T F +N   L     P+++ L   +  ++ HR +V
Sbjct: 300 IVVDVKRDANANVVLNKLFKMTPLQTSFSVNCIALVK-GRPKLLSLKDCISNFVNHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQV 428
           + RR+ + ++  + R  IL+GL+IA  NIDE++ IIR+   P+     +++RF L E Q 
Sbjct: 359 VIRRTQYDLRKAEERAHILQGLIIASDNIDEVVHIIRSAQNPQAAIEGLMNRFELDEVQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+++E D LL + E    +L+        I  E+ EVKE F  
Sbjct: 419 KAIVEMRLRQLTNLMQEQLRNEYDELLKQIEYFKQILSDEDLCMKVIKDELIEVKEQFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  +  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDEMVITISHMGYIKRTPLAEFRAQARGGVGSKGTSTRDT 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + +L  +  G+ + +    +  G  + +  AIQ +++++ +  I    
Sbjct: 539 DFVEYIYPATMHNTMLFFTQKGRCFWMKVYEIPEGAKNSKGRAIQNMLNIDPDDAINVCL 598

Query: 607 VYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
              +        +  ++  +  G        E       G   + +  ++++  V    G
Sbjct: 599 RIKNLNDAEFCRSHYVVFCTKNGIIKKTCLQEYSRPRTNGVNAITIREDDRVIGVRLTNG 658

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
           +  + +   N + + F   ++  M R   GVR  +  + G   +  ++C    +  T + 
Sbjct: 659 ENEIIIANRNGRAIRFHESKVRAMGRTATGVRGMTIDEDGSDEVVGMVCVNDPQTETIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +  +     +  RG  G        ++GK ++
Sbjct: 719 VSEQGYGKRSDIEDYRVTNRGAKGVKTLNITEKTGKLVA 757


>gi|107102698|ref|ZP_01366616.1| hypothetical protein PaerPA_01003764 [Pseudomonas aeruginosa PACS2]
 gi|116051157|ref|YP_790012.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296388348|ref|ZP_06877823.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAb1]
 gi|115586378|gb|ABJ12393.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 921

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/839 (30%), Positives = 412/839 (49%), Gaps = 110/839 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LAL+DNP++++++L++YI GPDFPT G I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAG-IINGRAGIIEAYRTGRGRIYI 242

Query: 253 RARWCVEEV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VEE+  G G   I++TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R    ++++ +++  + +++ F +N+  L     P+ + L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVD-GQPRTLNLKDMLEVFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ + ++    R  IL+G  +A  NID +I +I++   P                 
Sbjct: 362 VVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAV 421

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++ SE   
Sbjct: 422 EAMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L    ++  +L +  +    I  E+  VK  F  +     RRT       +        
Sbjct: 482 ILNLIGELIRILTNPARLMEVIREELEAVKAEFGDA-----RRTEIV---ASQVDLTIAD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D ++  L A++   +LL
Sbjct: 534 LITEEDRVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD-------------- 609
            S+ GK Y L    +        G  +  L+ L+  + I      D              
Sbjct: 594 FSSKGKVYWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDL 653

Query: 610 --------------------------------STCKLLVVSSKGNAFIVEESEIIANTRK 637
                                           +   + + ++ G        +       
Sbjct: 654 DEAEGAVLEGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSS 713

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   LK+   + +       G   V +     K++ F+   +  M R  +GVR      G
Sbjct: 714 GLIALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRLGKG 773

Query: 696 GISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +I   I E G   + ++ R + +           RGG G +      R+G  +++
Sbjct: 774 Q--QLISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAA 830



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 55/142 (38%), Gaps = 6/142 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++L S+ GK     A +++   G        + L   Q +++  + +S  ++L  S +G 
Sbjct: 738 VMLFSSAGKVIRF-AESVVRIMGRNARGVRGMRLGKGQQLISMLIPESGAQILTASERGF 796

Query: 623 AFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 S+     R G+  + +     +   +  V    G+ + ++ +   L+   +D++
Sbjct: 797 GKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEV 856

Query: 679 PEMSR-GKGVRLQSYKDGGISD 699
               R  +GV L       +  
Sbjct: 857 SLSGRNTQGVTLIKLASDEVLV 878


>gi|15598364|ref|NP_251858.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAO1]
 gi|254236130|ref|ZP_04929453.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719]
 gi|254241856|ref|ZP_04935178.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192]
 gi|313108480|ref|ZP_07794484.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016]
 gi|1346237|sp|P48372|GYRA_PSEAE RecName: Full=DNA gyrase subunit A
 gi|9949285|gb|AAG06556.1|AE004741_1 DNA gyrase subunit A [Pseudomonas aeruginosa PAO1]
 gi|459929|gb|AAA68625.1| gyrase A subunit [Pseudomonas aeruginosa PAO1]
 gi|126168061|gb|EAZ53572.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719]
 gi|126195234|gb|EAZ59297.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192]
 gi|310880986|gb|EFQ39580.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016]
          Length = 923

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/839 (30%), Positives = 412/839 (49%), Gaps = 110/839 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LAL+DNP++++++L++YI GPDFPT G I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAG-IINGRAGIIEAYRTGRGRIYI 242

Query: 253 RARWCVEEV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VEE+  G G   I++TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R    ++++ +++  + +++ F +N+  L     P+ + L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVD-GQPRTLNLKDMLEVFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ + ++    R  IL+G  +A  NID +I +I++   P                 
Sbjct: 362 VVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAV 421

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++ SE   
Sbjct: 422 EAMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L    ++  +L +  +    I  E+  VK  F  +     RRT       +        
Sbjct: 482 ILNLIGELIRILTNPARLMEVIREELEAVKAEFGDA-----RRTEIV---ASQVDLTIAD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D ++  L A++   +LL
Sbjct: 534 LITEEDRVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD-------------- 609
            S+ GK Y L    +        G  +  L+ L+  + I      D              
Sbjct: 594 FSSKGKVYWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDL 653

Query: 610 --------------------------------STCKLLVVSSKGNAFIVEESEIIANTRK 637
                                           +   + + ++ G        +       
Sbjct: 654 DEAEGAVLEGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSS 713

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   LK+   + +       G   V +     K++ F+   +  M R  +GVR      G
Sbjct: 714 GLIALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRLGKG 773

Query: 696 GISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +I   I E G   + ++ R + +           RGG G +      R+G  +++
Sbjct: 774 Q--QLISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAA 830



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 55/142 (38%), Gaps = 6/142 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++L S+ GK     A +++   G        + L   Q +++  + +S  ++L  S +G 
Sbjct: 738 VMLFSSAGKVIRF-AESVVRIMGRNARGVRGMRLGKGQQLISMLIPESGAQILTASERGF 796

Query: 623 AFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 S+     R G+  + +     +   +  V    G+ + ++ +   L+   +D++
Sbjct: 797 GKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEV 856

Query: 679 PEMSR-GKGVRLQSYKDGGISD 699
               R  +GV L       +  
Sbjct: 857 SLSGRNTQGVTLIKLASDEVLV 878


>gi|148543249|ref|YP_001270619.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016]
 gi|184152661|ref|YP_001841002.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112]
 gi|227364312|ref|ZP_03848405.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3]
 gi|325683511|ref|ZP_08163027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri MM4-1A]
 gi|148530283|gb|ABQ82282.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016]
 gi|183224005|dbj|BAG24522.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112]
 gi|227070625|gb|EEI08955.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3]
 gi|324977861|gb|EGC14812.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri MM4-1A]
          Length = 834

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/765 (30%), Positives = 387/765 (50%), Gaps = 23/765 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   ++ N        +  V+L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ 
Sbjct: 1   MAEQDMPN-------RITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYG 53

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+     +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG+
Sbjct: 54  MNELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGS 113

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEA+M+++A  +L+ +++D VDF D Y+  + EP V P++FPNLL NG 
Sbjct: 114 VDGDGAAAMRYTEAKMSKIAVEMLRDINKDTVDFHDNYDGTEKEPDVLPARFPNLLVNGA 173

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP+HN+ E+      L+++P+I+ E L++ I GPDFPTGG +V  +  I 
Sbjct: 174 SGIAVGMATNIPTHNLGEVINGLHMLMNDPDITTEGLMKAIPGPDFPTGG-VVMGKSGIR 232

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   VRA+  +EE   G   I+V EIPY V K++LIE+IAEL   K I  + D
Sbjct: 233 KAYETGRGTIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITD 292

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + DE+  D   ++    R    ++++ +++ ++ M+T F  NM  +     P+++ L  I
Sbjct: 293 VNDETDRDGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIV-NGAPKILSLKQI 351

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L+ +L H+  V+ RR+ F ++    R  I+ GL IA  +IDEII IIRN       K  +
Sbjct: 352 LQYYLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNEL 411

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++ + L++ Q  AIL++RL  L  LE  +I+ E   L+A       +L   ++    I  
Sbjct: 412 MNNYGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKLMAAIADYKDILAHRERINQIIYD 471

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSH 536
           E+ E+++ F        +      +   D    +  ++       +        +S    
Sbjct: 472 ELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDIIVALTHNGYIKRLPVDEFKSQHRG 531

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLI 594
              +  +   + D ++  + + T D +L  +  GK Y++    +        G  I  L+
Sbjct: 532 GRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQGIPIINLL 591

Query: 595 DLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            +N+ + I           D    L   +  G       +E       G   L +   ++
Sbjct: 592 GINNKEKISAVINVSHETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNGLKALNLHENDE 651

Query: 650 MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  ++ D   ++   N   L F    +  M R   GVR    +D     +    +  
Sbjct: 652 LIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMGRSAAGVRGIRLRDEDYV-IGAAPLNS 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  +   + +  +     +  RGG+G        ++G  + 
Sbjct: 711 DSKVLVISENGFGKQTSASEYPIKGRGGLGVKTVNVTAKNGPLVG 755



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L AL+  E D L           +++ + +G A +  +  + S
Sbjct: 624 TVKRTAVTEFKNIRSNGLKALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRS 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 A    I L     ++ A   +S  K+LV+S  G       SE     R G    
Sbjct: 684 MGRSA-AGVRGIRLRDEDYVIGAAPLNSDSKVLVISENGFGKQTSASEYPIKGRGGLGVK 742

Query: 643 KVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
            V+       +  +  V GD  + +V +   ++ F I+ + +  R   GV L    +G  
Sbjct: 743 TVNVTAKNGPLVGLTTVNGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDNGAR 802

Query: 698 SDVICFKICE 707
              I     E
Sbjct: 803 VATIAKVDKE 812


>gi|323486744|ref|ZP_08092063.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum
           WAL-14163]
 gi|323694886|ref|ZP_08109036.1| A subunit [Clostridium symbiosum WAL-14673]
 gi|323399883|gb|EGA92262.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum
           WAL-14163]
 gi|323500976|gb|EGB16888.1| A subunit [Clostridium symbiosum WAL-14673]
          Length = 850

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/762 (31%), Positives = 396/762 (51%), Gaps = 34/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  + L+  +E  Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        +K
Sbjct: 7   DKVHDIDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF   ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFAPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+    + +IDN      E S+E++LE + GPDFPTG  I+  R  I E+YR GRG 
Sbjct: 187 NLREVIAGVVKIIDNRVEEGRETSLEEILEIVKGPDFPTGATIL-GRAGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA + +E +  G   IVVTE+PY V K+RLIEKIAEL+  K++  + D+RDES  + 
Sbjct: 246 IRVRAVYDIETLANGKNRIVVTELPYMVNKARLIEKIAELVKEKKVDGITDLRDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V     R ++ ++LM  +   + ++  F + M  L     P+++ L  +L+ +L H+ 
Sbjct: 306 MRVCIELRRDVNANVLMNRLLKHTQLQDTFGVIMLALV-NNEPRILNLKQMLEYYLQHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GL+ A  +IDE+I IIR        K  ++ RF+L+E 
Sbjct: 365 EVVTRRTKYDLNKAEERAHILEGLIKALDHIDEVIKIIRGSANVADAKAQLMERFALSEI 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+A+  ++ ++L   K+    I  EI  + + +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLENEYRELMAKIAELKAILADEKKLLGVIREEIIVISDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSV 538
                   RRT        +     + +I  + + V ++N G+I+ +             
Sbjct: 485 GDE-----RRTAI---GYDEYDMSAEDLIPDDDVVVAMTNFGYIKRMSSDNFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +  +   + D ++  L       ++  +  G+ Y L A  +        G AI  L+ L
Sbjct: 537 GIKGMQTIDEDYIEDLLMTTNHHYVMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I +      ++    L + +  G        E     + G   + +   +++  V
Sbjct: 597 MPGEKITSIIAMKEFEDDKYLFMATRNGMVKKTSLKEYENVRKNGLQAIVLRENDELIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +    + + +V +    + F    +    R   GV    + +      +     +G   
Sbjct: 657 KRTDNTEDIFLVTKKGMCIRFHETDVRVTGRVSMGVIGMKFDEDDEVIGMQMS-SQGECL 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + ++   Y +           RGG G    K   ++G  + +
Sbjct: 716 LVASEYGYGKRTPIEEFNCQNRGGKGVRCYKIIDKTGDLIGA 757



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 60/211 (28%), Gaps = 8/211 (3%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
                A K       +       ++               L A+  +E D L        
Sbjct: 602 ITSIIAMKEFEDDKYLFMATRNGMVKKTSLKEYENVRKNGLQAIVLRENDELIEVKRTDN 661

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           T+ I L++  G        ++         +  +   + + +++   +      LLV S 
Sbjct: 662 TEDIFLVTKKGMCIRFHETDVRVTGRVSMGVIGM-KFDEDDEVIGMQMSSQGECLLVASE 720

Query: 620 KGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
            G        E     R GK      +   + + +     V     + ++     ++  S
Sbjct: 721 YGYGKRTPIEEFNCQNRGGKGVRCYKIIDKTGD-LIGAKLVDNSREIMLITNEGIIIKMS 779

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           ++ I  + R   GV+L S        V    
Sbjct: 780 VNDISIIGRNTSGVKLMSIDPDSGIAVASIA 810


>gi|194467408|ref|ZP_03073395.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23]
 gi|194454444|gb|EDX43341.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23]
          Length = 834

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/765 (30%), Positives = 387/765 (50%), Gaps = 23/765 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   ++ N        +  V+L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ 
Sbjct: 1   MAEQDMPN-------RITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYG 53

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+     +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG+
Sbjct: 54  MNELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGS 113

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEA+M+++A  +L+ ++++ VDF D Y+  + EP V P++FPNLL NG 
Sbjct: 114 VDGDGAAAMRYTEAKMSKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGA 173

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP+HN+ E+      L++NP+I+ E L++ I GPDFPTGG +V  +  I 
Sbjct: 174 SGIAVGMATNIPTHNLGEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGG-VVMGKSGIR 232

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   VRA+  +EE   G   I+V EIPY V K++LIE+IAEL   K I  + D
Sbjct: 233 KAYETGRGTIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITD 292

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + DE+  D   ++    R    ++++ +++ ++ M+T F  NM  +     P+++ L  I
Sbjct: 293 VNDETDRDGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIV-NGAPKILSLKQI 351

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L+ +L H+  V+ RR+ F ++    R  I+ GL IA  +IDEII IIRN       K  +
Sbjct: 352 LQYYLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNEL 411

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++ + L++ Q  AIL++RL  L  LE  +I+ E   L+A       +L   ++    I  
Sbjct: 412 MNNYGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKLMAAIADYKDILAHRERINQIIYD 471

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSH 536
           E+ E+++ F        +      +   D    +  ++       +        +S    
Sbjct: 472 ELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDIIVALTHNGYIKRLPVDEFKSQHRG 531

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLI 594
              +  +   + D ++  + + T D +L  +  GK Y++    +        G  I  L+
Sbjct: 532 GRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQGIPIINLL 591

Query: 595 DLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            +N+ + I           D    L   +  G       +E       G   L +   ++
Sbjct: 592 GINNKEKISAVINVSHETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNGLKALNLHENDE 651

Query: 650 MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  ++ D   ++   N   L F    +  M R   GVR    +D     +    +  
Sbjct: 652 LIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMGRSAAGVRGIRLRDEDYV-IGAAPLNS 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  +   + +  +     +  RGG+G        ++G  + 
Sbjct: 711 DSKVLVISENGFGKQTSASEYPIKGRGGLGVKTVNVTAKNGPLVG 755



 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L AL+  E D L           +++ + +G A +  +  + S
Sbjct: 624 TVKRTAVTEFKNIRSNGLKALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRS 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 A    I L     ++ A   +S  K+LV+S  G       SE     R G    
Sbjct: 684 MGRSA-AGVRGIRLRDEDYVIGAAPLNSDSKVLVISENGFGKQTSASEYPIKGRGGLGVK 742

Query: 643 KVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
            V+       +  +  V GD  + +V +   ++ F I+ + +  R   GV L    +G  
Sbjct: 743 TVNVTAKNGPLVGLTTVNGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKIDNGAR 802

Query: 698 SDVIC 702
              I 
Sbjct: 803 VATIA 807


>gi|242310771|ref|ZP_04809926.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489]
 gi|239523169|gb|EEQ63035.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489]
          Length = 829

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/763 (34%), Positives = 421/763 (55%), Gaps = 31/763 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L+ ++++ V++  +++E YL Y++S I  RA+PD RDG KPVHRRI++AM E+G+   
Sbjct: 2   SDLLNQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSK 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           A +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGDSAAA 
Sbjct: 62  AKYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+MTQ AE +L+ +D+D VDF   Y++   EP + PS+ PNLL NG++GIAVGMAT
Sbjct: 122 RYTEAKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP H V EI +A + LIDNP+  + ++L+++ GPDFPTGG I+  +  I E+Y  GRG 
Sbjct: 182 NIPPHRVDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGG-IIYGKNGIREAYETGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA+  +E+       IV+ EIPYQV K+RL+E+IAEL   K I  + ++RDES  + 
Sbjct: 241 IKVRAKTHIEKTKTK-DIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    ++++  +F  + ME+ F + + +    + P++  L  +L  +++HR+
Sbjct: 300 IRVVIELKREAMSEIVLNHLFKSTPMESTFGI-ILLAIYNKEPKIFTLLELLGLFISHRK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ F ++    R  IL+GL IA  NIDEI+++IR+   P   K  ++S+F+L+E 
Sbjct: 359 SVVIRRTIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQFNLSEI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I++E   LL E E ++S+L S       I  E+ EVKE F
Sbjct: 419 QAQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILRSEDLLNKIIKEELLEVKEKF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           S      +R T   E   +      + +I  E + V +S+RG+++               
Sbjct: 479 ST-----KRLTAIEEDYES---IDMEDLIPNEAVVVTMSHRGYVKRVPVRTYEKQNRGGK 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
              + +  + D ++    + T D I+ ++  G+ Y L    +        G+A+  LI+L
Sbjct: 531 GKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIGKAVVNLINL 590

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I+       ++    +   +  G       SE       G   + +   +++   
Sbjct: 591 APDEKIMATITTKDFNEDKSIAFFTKNGIIKRTNLSEFKNIRNVGVRAINLDENDELVTA 650

Query: 654 VKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGL 709
             ++     + VV      + FS+D + E+ R  +GV    +K              E  
Sbjct: 651 KIISPAIQQILVVTYEGMCVRFSVDNVREIGRVARGVTAIKFKIPKDYVIGATVVSNENE 710

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + +   +        +  RGG G +  K   ++GK + 
Sbjct: 711 EILSVSEKGIGKRTEINEYRITNRGGKGVIAMKLTSKTGKLVG 753



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 117/364 (32%), Gaps = 24/364 (6%)

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----M 417
            E+    +E+ +  S  R + +  ++   + L +      + +  I  + +   +     
Sbjct: 441 NEYQELLKEIEYLNSILRSEDLLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDMEDLIP 500

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                +T +    +  + +R+  K           N   +       ++        I  
Sbjct: 501 NEAVVVTMSHRGYVKRVPVRTYEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITN 560

Query: 478 -----EIREVKEIFSKSTDLGRRRTTFCEVSRADKAT--LQQAMIEKEPITVVISNRGWI 530
                 ++  K   +  T +G+       ++  +K    +      ++      +  G I
Sbjct: 561 KGQLYWLKVYKIPEASRTAIGKAVVNLINLAPDEKIMATITTKDFNEDKSIAFFTKNGII 620

Query: 531 RSLKSHSVDLSALH-------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           +                     +  + +   + +    +IL+++ +G        N+   
Sbjct: 621 KRTNLSEFKNIRNVGVRAINLDENDELVTAKIISPAIQQILVVTYEGMCVRFSVDNVREI 680

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGK--T 640
                 +  +        ++ A V  +   ++L VS KG     E +E     R GK   
Sbjct: 681 GRVARGVTAIKFKIPKDYVIGATVVSNENEEILSVSEKGIGKRTEINEYRITNRGGKGVI 740

Query: 641 FLKV-SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
            +K+ S   K+  VV V  +  + V+  + K++   +  I +  R   GV + +  D  +
Sbjct: 741 AMKLTSKTGKLVGVVNVDENMDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVNVDDDKV 800

Query: 698 SDVI 701
             + 
Sbjct: 801 VSIA 804


>gi|325860076|ref|ZP_08173202.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A]
 gi|327314678|ref|YP_004330115.1| DNA gyrase subunit A [Prevotella denticola F0289]
 gi|325482361|gb|EGC85368.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A]
 gi|326944311|gb|AEA20196.1| DNA gyrase, A subunit [Prevotella denticola F0289]
          Length = 860

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/773 (29%), Positives = 384/773 (49%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E I+  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHIMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNPEI+ + L+E+I  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPEITTDGLMEFIPAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E       IVVTEIPY V K +LIE IA+L+   ++  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEI-ESDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALV-GGRPRLLSLRECIKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  IL+ L+ A  NIDE++ +IR    P     +   RF 
Sbjct: 358 EHRHDVTIRRTRFDLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEKRFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
             E Q  AI+++RL  L  L   Q+  E D L+   + +  +L++ ++    +  E++EV
Sbjct: 418 FDELQSKAIVDMRLSQLTGLRLDQLHQEFDELMQTIKDLQEILDNPERCREVMKAELQEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE +        RRT              +     +P+ + IS+ G+I+           
Sbjct: 478 KEKYGDE-----RRTEIIPDEHE---FNAEDFYPNDPVVITISHLGYIKRTPLADFKEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       +E D  +    A     +L  +  G+ Y +   ++  G  + +  AIQ 
Sbjct: 530 RGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNAKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++ L     +             +  +  ++  + +G                G   + +
Sbjct: 590 MLSLEAGDAVNAFLRIRGLDDDAFLDSHFVVFATKQGIVKKTSLRAYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISD 699
           +  +++  V    G + + +   N +   F    I  M R   GVR     + G   +  
Sbjct: 650 NEGDEVVDVRLTNGKNELIMADRNGRACRFDESNIRTMGRVSTGVRGMRLDEDGQDEVVG 709

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +I        T +  +   Y +        L  RGG G        ++GK ++
Sbjct: 710 MIVVNDPVNETVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNITEKTGKLVA 762



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 96/286 (33%), Gaps = 17/286 (5%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             + +  +           +  D        +   I   +         + +   R    
Sbjct: 552 ATMHQTMLFFTRKGRCYWMKCYDIPEGDKNAKGRAIQNML---SLEAGDAVNAFLR---I 605

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
             +           +   +   V  ++       +++   + A++  EGD +      + 
Sbjct: 606 RGLDDDAFLDSHFVVFATKQGIVKKTSLRAYSRPRTN--GVIAININEGDEVVDVRLTNG 663

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDS--TCKLLV 616
            + +++   +G+A      N+ +       ++ + +D +   ++V   V +      ++V
Sbjct: 664 KNELIMADRNGRACRFDESNIRTMGRVSTGVRGMRLDEDGQDEVVGMIVVNDPVNETVMV 723

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLI 672
           VS +G     +  +     R GK    ++  EK   +  +  VT  + + ++ ++  ++ 
Sbjct: 724 VSEEGYGKRSQVEDYRLTNRGGKGVKTLNITEKTGKLVAIKNVTDANDLMIINKSGIVIR 783

Query: 673 FSIDQIPEMSRG-KGVRLQSY-KDGGISDVICFKICEGLTWIDSAG 716
            S+ +   M R  +GVRL +  K   +   +C  +   +       
Sbjct: 784 MSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSEMETQVEEE 829


>gi|307709379|ref|ZP_07645837.1| DNA gyrase, A subunit [Streptococcus mitis SK564]
 gi|307619962|gb|EFN99080.1| DNA gyrase, A subunit [Streptococcus mitis SK564]
          Length = 822

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/760 (31%), Positives = 399/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKEELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----QRRTEL--MVGEVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASV-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSG 750


>gi|144899858|emb|CAM76722.1| Gram negative topoisomerase IV, subunit A [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 741

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/743 (53%), Positives = 537/743 (72%), Gaps = 5/743 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +   V  +++  SL  AL ERYLAYA+STI  R++PD+RDG KPVHRR++ AM ++ LD 
Sbjct: 2   TQPAVSGDIRDTSLSEALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAMRQLKLDP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              FKK AR+VG+VIGK HPHGD SVYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAA
Sbjct: 62  EGGFKKCARVVGDVIGKYHPHGDMSVYDAMVRLAQDFAVRYPLVEGQGNFGNIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++T VA  +++ +D+D VDFR TY+  + EPVV P+ FPNLLANG +GIAVGMA
Sbjct: 122 MRYTEAKLTAVAAALMENLDDDTVDFRPTYDGSEEEPVVMPAAFPNLLANGAAGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HNV EIC A   LI  P+  ++ L+ ++ GPDFPTGG++VES+ SI E+YR GRG
Sbjct: 182 TNIPPHNVGEICNALTHLIAAPDCPVDDLVRHMPGPDFPTGGVLVESQASIHEAYRSGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            FR+RA+W VE++  G + I+VTEIPYQVQKS++IEKIAEL+  K++PLL DIRDESAED
Sbjct: 242 SFRLRAKWEVEKLSHGLYQIIVTEIPYQVQKSKVIEKIAELLNEKKLPLLADIRDESAED 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           VR+VL P+NR+++ ++LME +F  +D+E R  LNMNVL    VP VM L  +L+ +L HR
Sbjct: 302 VRVVLEPRNRTVEAEMLMEQLFRQTDLEVRVSLNMNVLDRDAVPSVMNLKQVLQAFLDHR 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            EVL RRS FR+  I+RR+E+L+G L+AYLN+DE+I IIR ED+PK VM+  F LTE Q 
Sbjct: 362 MEVLERRSRFRLDKIERRLEVLEGYLVAYLNLDEVIRIIREEDEPKAVMMRTFGLTEVQT 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AILN+RLRSLRKLEE++I+ E D L AEK  +++LL    ++W+ IA ++   ++ F  
Sbjct: 422 EAILNMRLRSLRKLEEFEIRKEHDQLSAEKSDLEALLADESRRWSTIAAQVAATRKAFGP 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
            T LG RRT   +   A      +A +E+EPIT+++S +GWIR++K H   L  + FKEG
Sbjct: 482 GTPLGDRRTQLADAPSA-VVVPIEAFVEREPITLLLSEKGWIRAMKGHVDQLDGVKFKEG 540

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D LK+AL A TTD++L+ ++DG+ YT+    L SGRG GE ++L+ID+ ++ +++  F +
Sbjct: 541 DQLKLALKAETTDKLLVFTSDGRFYTIGGDKLPSGRGFGEPLRLMIDMANDAEVLCVFAH 600

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTGDHVAVVGEN 667
               KLL+ SS G  FIVEE+E++A T+ GK  L +    EK    +   GD VA++G+N
Sbjct: 601 KPGRKLLLSSSGGRGFIVEEAEVLAQTKAGKMVLNLGDEGEKAAFCLPAEGDAVAIIGDN 660

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           RKLL+F  ++IP M+RG+GV LQ Y+DGG++D+  F + +GL+W  S  R   R+E DL 
Sbjct: 661 RKLLVFMAEEIPVMARGRGVLLQKYRDGGVADIKVFTLADGLSWK-SGER--TRTEQDLT 717

Query: 728 GWLGKRGGVGSLVPKGFPRSGKF 750
            WLGKR  VG L P GFPR+ KF
Sbjct: 718 PWLGKRASVGRLPPTGFPRANKF 740


>gi|322375381|ref|ZP_08049894.1| DNA gyrase, A subunit [Streptococcus sp. C300]
 gi|321279644|gb|EFX56684.1| DNA gyrase, A subunit [Streptococcus sp. C300]
          Length = 822

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/760 (31%), Positives = 395/760 (51%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +++F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMNKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +         + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----KRRTEL--MIGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GVR  + ++G           +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRGVNLREGDTVVGASVITNQDE-VL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKNGPLAG 750


>gi|257065526|ref|YP_003151782.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548]
 gi|256797406|gb|ACV28061.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548]
          Length = 814

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/758 (33%), Positives = 413/758 (54%), Gaps = 29/758 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V L   +++ YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD    
Sbjct: 2   IEDNNIINVDLEKKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            +KSAR+VG+V+GK HPHGD ++YD+LVRLAQ F  RYPL  GQGNFG+IDGD AAA RY
Sbjct: 62  TRKSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM+++A+ +L+ +++D VDF   ++EE+ EPVV PS+FPNLL NG++GIAVGMAT++
Sbjct: 122 TEVRMSKIAKEMLRDINKDTVDFMPNFDEEELEPVVLPSRFPNLLVNGSNGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E  +A +A + +PEISIE L + I GPDFPTG  I+  +  I ++Y  GRG  +
Sbjct: 182 APHNLGESIDACIAYMKDPEISIEDLNKIIPGPDFPTGAYIL-GKAGIKDAYSTGRGKVK 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA   +E   +    IV+TEIPYQV KSRLIEKIA+L+  KRI  + DIRDES      
Sbjct: 241 LRAVCKIEPFKKNRERIVITEIPYQVNKSRLIEKIADLVKDKRIDGISDIRDESDRKGMR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + ++++ +++  + +ET F +    L    VP+V+ L  +++ ++ H+++V
Sbjct: 301 IVIEIKRDSNANIVLNNLYKYTQLETTFGIINLALVD-GVPKVLNLKELIEYYIEHQKDV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQV 428
           + RR+SF +     R  I++GL+IA  NIDEII IIR+         +   +F LT+ Q 
Sbjct: 360 VTRRTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEKFGLTDKQS 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  ++ +E   L      + S+LNS +   N I  E+ E+KE FS 
Sbjct: 420 QAILDMQLKRLSGLEIDKLNAENKELEETIAYLLSILNSEENLLNLIIDEMEEIKEKFSD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+              + +IEKE + + ++  G+I+                +
Sbjct: 480 -----DRRSKIIPDEGE---IDIEELIEKEDVLLTLTKDGYIKRLPIDTYKVQNRGGKGI 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNH 598
           +A + KEGD +K     +T + +L  ++ GK Y+L    +     +  G AI  ++ L  
Sbjct: 532 AAGNTKEGDFIKKIKTTNTHEDLLFFTSFGKVYSLKTYEVPEGSRQSRGIAIINILKLES 591

Query: 599 NQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + I             ++++ +  G     +        + G   + +   +++  V +
Sbjct: 592 GEKITEMMTLSELNKDSQIVLQTKMGTIKKTDAENFTNIRKNGIIAISLKEYDRLISVRQ 651

Query: 656 VT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
           +   + + +  +N   + F+   +  M R  +GVR            +  K  +    + 
Sbjct: 652 IDKEEELIISTKNGMTIQFNSADLRSMGRIAQGVRAIKLDKDDEVVSMNIK-GDETYLLV 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +Y +  +        RGG G    K   ++GK +
Sbjct: 711 VTENAYGKKTSFNNFKNQNRGGKGVKCHKVTEKTGKII 748


>gi|229497118|ref|ZP_04390821.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406]
 gi|229315935|gb|EEN81865.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406]
          Length = 869

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/762 (31%), Positives = 396/762 (51%), Gaps = 23/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
             +E+ +  + +   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR+++AM+EMG  +  
Sbjct: 2   EDIEDRIIKIDIETEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNEMGNVYSQ 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             +KSA+ VGEV+ K HPHGD +VY +LVRLAQP+  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PTRKSAKAVGEVLAKYHPHGDSAVYMTLVRLAQPWNLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+T++A  +L+ +D++ VDF++ +++   EP V P++FPNLL NG SGIAVGMAT+
Sbjct: 122 YTEARLTELAGEMLRDIDKETVDFQNNFDDTTQEPTVLPTRFPNLLVNGASGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEI-SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +  HN++E  +  +A ID      +  L+ YI  PDFPTGG  +     + E++  GRG 
Sbjct: 182 MAPHNLRECIDGCVAYIDAGGALEVADLMRYIKAPDFPTGG-FIYGYAGVKEAFETGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
             +RAR  +E    G   I+VTEIPYQV K++L+  IA+L+  +RI  + +I DES+ + 
Sbjct: 241 IVLRARTEIETDSNGRENIIVTEIPYQVNKAQLVSDIAQLVNERRIEGISNISDESSGKG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  +  +++  +F L+ +++ F +N   L     P ++ L  ++ E++ HR
Sbjct: 301 GMRIVIEVKRDANASVVLNHLFKLTPLQSYFNVNNIALVK-GRPCLLNLKQLIGEFVDHR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RRS F ++    R  IL+GLLIA  NIDE+I IIR+     + +  +  RF L+E
Sbjct: 360 HDVVRRRSIFDLRKARERAHILEGLLIAVDNIDEVIHIIRSSENAQEAQERLRERFELSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AI+++RLR+L  LE  ++++E D L+   + ++ LL         +  E+ EVKE 
Sbjct: 420 LQARAIVDMRLRALTGLESDKLRAEFDELMKTIQYLEGLLADDNLLMQVVKDELLEVKEK 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F          ++         A  +  +       +  +     RS     V       
Sbjct: 480 FGDPRRTEIVFSSEEFNPEDFYADDEMIITISHLGYIKRTPLRDFRSQARGGVGSKGSTT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
           +E D ++    A     +LL +T G+ + LP   +  G    +  AIQ ++++  +  I 
Sbjct: 540 REEDFIEYIYSASMHATLLLFTTKGRCFWLPVYKIPEGAKSTKGRAIQNILNIEADDRIT 599

Query: 604 TAF---------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
                        + ++  L+  + +G               KG   +K++  + +  V 
Sbjct: 600 ACIRIKKLQKDPEFVASHYLVFATLQGMIKKTPLEAYSNPRSKGVFAIKLNEGDSVVSVR 659

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGL 709
              G   + +  +  + + F   ++  M R   GVR     +GG   I  ++  K  E  
Sbjct: 660 LTNGKTEILLANKGGRAIRFPESKVRSMGRVTTGVRGMILDEGGEDAIVGMVALKDPEKE 719

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           T +  +   Y +        +  RGG G    +   ++G  +
Sbjct: 720 TILVVSECGYGKRTTLDSYRITNRGGKGVKTMQITEKTGSLV 761



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 11/183 (6%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  + A+   EGDS+      +    ILL +  G+A   P   + S       ++ +
Sbjct: 638 NPRSKGVFAIKLNEGDSVVSVRLTNGKTEILLANKGGRAIRFPESKVRSMGRVTTGVRGM 697

Query: 594 IDLNHNQD-IVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSS 646
           I     +D IV         K  +LVVS  G              R GK      +   +
Sbjct: 698 ILDEGGEDAIVGMVALKDPEKETILVVSECGYGKRTTLDSYRITNRGGKGVKTMQITEKT 757

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD-GGISDVICF 703
              +     VT +  + ++  +   +   +  I  + R  +GV+L +    G     +C 
Sbjct: 758 G-SLVDFRSVTDELDLMIINRSGVAIRMPMSSINVIGRATQGVKLINLSSRGDEIASVCI 816

Query: 704 KIC 706
              
Sbjct: 817 VAS 819


>gi|315613309|ref|ZP_07888218.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis ATCC 49296]
 gi|315314544|gb|EFU62587.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis ATCC 49296]
          Length = 822

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 395/760 (51%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +         + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----KRRTEL--MIGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GVR  + ++G           +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRGVNLREGDTVVGASVITNQDE-VL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKNGPLAG 750


>gi|156888523|gb|ABU96666.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/756 (31%), Positives = 391/756 (51%), Gaps = 21/756 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +     VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRRDASANVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q 
Sbjct: 359 ITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                R      EV   +   L +             +    +   R+ K     +    
Sbjct: 479 P---RRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTG 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             + D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L   + I
Sbjct: 536 VNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETI 595

Query: 603 VTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            T                 + +G     E SE     + G   L +   + +  V+   G
Sbjct: 596 QTIINARKEETAGKSFFFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDLLINVLLTNG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            D + +  ++   + F+   I  M R   GVR  S ++     V   +I +    +    
Sbjct: 656 QDDIIIGTQSGYSVRFNEASIRNMGRSATGVRGVSLREDDRV-VGASRINDHQEVLVITE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +           RGG G       P++G+   
Sbjct: 715 NGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 57/160 (35%), Gaps = 8/160 (5%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            +  D I++ +  G +      ++ +       ++  + L  +  +V A   +   ++LV
Sbjct: 653 TNGQDDIIIGTQSGYSVRFNEASIRNMGRSATGVRG-VSLREDDRVVGASRINDHQEVLV 711

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           ++  G     E +E     R GK      +   +  ++  +V V G + + V+     ++
Sbjct: 712 ITENGYGKRTEATEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVII 770

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
             ++  I +  R   GV++                 +   
Sbjct: 771 RTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEE 810


>gi|225011966|ref|ZP_03702404.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A]
 gi|225004469|gb|EEG42441.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A]
          Length = 831

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/761 (31%), Positives = 405/761 (53%), Gaps = 35/761 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    A KK
Sbjct: 5   DKIIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIRANTAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMQKISEDLLADIDKETVDLQLNFDDTLKEPTVLPTRVPNLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +  I+N +I+IE+L++ I  PDFPTGG I    + + E++  GRG   +RA
Sbjct: 185 NLTEVVDGTIQYIENNDITIEELIKTIKAPDFPTGGTIY-GYDGVREAFLTGRGRIVIRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV  G  CI+VTEIPYQV K+ +I K AE++  K++  +  IRDES  +   +++
Sbjct: 244 KANIEEVN-GRECIIVTEIPYQVNKAEMIRKTAEMVNDKKVEGISSIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L     PQ++ L  ++  ++ HR +V+ R
Sbjct: 303 ILKRDAVPNIVLNKLYKYTALQSSFSVNNIALVK-GRPQMLNLKEMIHHFVEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+I IIR        +  ++ +F L+E Q  AI
Sbjct: 362 RTQFELRKAEDRAHILEGLIIASDNIDEVIKIIRASQSADAARENLIKQFKLSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E ++LL     +  +L+  +++   I  E+ E+K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRTEYNDLLVTIADLKDILDKKERRMEIIKLELVEIKDKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+       A      + MI  E + + IS+ G+I+              V   A 
Sbjct: 480 ---RRSNI---EYAGGDFSMEDMIPDEQVVITISHAGYIKRTPLIEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             ++ D L+          +L  +  GK + +    +  G    +  AIQ LI++  +  
Sbjct: 534 TTRDEDFLQDLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSKTAKGRAIQNLINIEQDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y +   +++ + KG        +       G   + V  ++++   
Sbjct: 594 VQAFICTQDLKDEEYINNHYVIMATKKGQVKKTSLEQYSRPRANGINAINVREDDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE-GLT 710
               G+ HV +  ++ K + F   +   M RG  GVR  +  D     V    + +    
Sbjct: 654 KLTNGNSHVMLAVKSGKAIRFEESKTRPMGRGASGVRGITLADSKDEVVGMVAVNDMDAN 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  +   Y +  +     +  RGG G        ++GK +
Sbjct: 714 ILVVSENGYGKRSSLDDYRITNRGGKGVKTISITDKTGKLV 754



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 8/221 (3%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           ++   +       ++  +   V  ++       +++   ++A++ +E D L  A   +  
Sbjct: 602 DLKDEEYINNHYVIMATKKGQVKKTSLEQYSRPRAN--GINAINVREDDELLEAKLTNGN 659

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSS 619
             ++L    GKA                 ++ +   +   ++V     +     +LVVS 
Sbjct: 660 SHVMLAVKSGKAIRFEESKTRPMGRGASGVRGITLADSKDEVVGMVAVNDMDANILVVSE 719

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSI 675
            G        +     R GK    +S  +K   +  +  VT  D + ++ ++   +   +
Sbjct: 720 NGYGKRSSLDDYRITNRGGKGVKTISITDKTGKLVTIKTVTDTDDLMIINKSGIAIRMEV 779

Query: 676 DQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             +  M R  +GVRL + K       +   + +     D  
Sbjct: 780 AALRVMGRATQGVRLINLKGDDTIAAVAKVMNDDTPIEDVN 820


>gi|303233441|ref|ZP_07320109.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4]
 gi|302480449|gb|EFL43541.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4]
          Length = 986

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/764 (30%), Positives = 398/764 (52%), Gaps = 29/764 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + + +    +K   L   ++  +L Y++S I  RA+PD+RDG KPVHRRI++AM+E  + 
Sbjct: 123 DLSDIHGGTLKPTDLSEEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIV 182

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                KKSA  VGEV+GK HPHGD S+Y+++VR+AQ F  R PLI G GNFG+IDGD AA
Sbjct: 183 PSRPHKKSAWTVGEVMGKYHPHGDSSIYEAMVRMAQDFSMRLPLIDGHGNFGSIDGDPAA 242

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+R+T  A  +L+ +D++ VD +  Y+E   EP V P++FPNLL NG++GIAVGM
Sbjct: 243 AMRYTESRLTHAAMDMLRDLDKETVDLQPNYDESLQEPAVLPARFPNLLVNGSNGIAVGM 302

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN+QE+  A   +IDNP  ++E L+  + GPDFPTGG I+   + I ++Y+ GR
Sbjct: 303 ATNVPPHNLQEVARAVCCMIDNPNSTLEDLMACLPGPDFPTGG-IIMGTDGIKDAYKTGR 361

Query: 248 GGFRVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           G   +R++  +E  GR G   +V+TEIPYQV KS L E+IA+ +  K+I  + D+RDES 
Sbjct: 362 GTLTIRSKVHIENTGRAGRQRLVITEIPYQVNKSLLQERIAQQVNEKKIEGISDMRDESN 421

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++    +   P +++ +++  + ++T F +    L    VP+ + L  +++ ++ 
Sbjct: 422 RKGMRIVIDLKQGAVPQVVLNNLYKRTQLQTSFSVIDIALVD-GVPRTLSLHDMIRYYIK 480

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FSL 423
           H+++V+ RR+ F +    +RV IL+GLLIA  NIDE++ IIR+              F +
Sbjct: 481 HQQDVVTRRTKFDLARAQKRVHILEGLLIAVDNIDEVVHIIRSSKDDAEAKSRMSERFGI 540

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            + Q +AIL +RLR L  L   ++ +++D L  +   +  LL + ++    I  E+ ++ 
Sbjct: 541 DDIQGEAILQMRLRRLTGLARDELAAQIDELYKQIAYLTDLLQNPEKMLEVIKEELMQIA 600

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           E ++       RRT     +   +    + +I +E + + +++  +I+          K 
Sbjct: 601 ERYASP-----RRTKI--STNEAQILDVEDLITEEDMVITVTHSSYIKRLPVATYRAQKR 653

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLL 593
               +  L  K+ D ++    A T D +L  +  GK Y L    L  G       A+  +
Sbjct: 654 GGKGVQGLSLKDNDFVEDLFVASTHDYVLFFTNKGKVYRLKVHELPVGSRTSRGSALVNV 713

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + L  ++          +     L+  + +G       +E   + R G   + +   +++
Sbjct: 714 LPLAEDEHPTAVITTRDFPDNQYLVFATKQGMVKKTAIAEYDKSRRDGLIAINLKDGDEL 773

Query: 651 KLVVK-VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V +   G+ + +     K ++FS + +   SR   GV+  S K+      +     +G
Sbjct: 774 VNVRRVCEGNRIILCTSAGKAIMFSEEDVRPTSRNTSGVKGISLKNNAYMLGMEISNGKG 833

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +      Y +        L  RGG G        + G  ++
Sbjct: 834 D-LLVITENGYGKRTPISEYSLQHRGGQGVTTIAMTSKKGALVA 876



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 61/183 (33%), Gaps = 8/183 (4%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                   KS    L A++ K+GD L         +RI+L ++ GKA      ++     
Sbjct: 748 KTAIAEYDKSRRDGLIAINLKDGDELVNVRRVCEGNRIILCTSAGKAIMFSEEDVRP-TS 806

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG----KTF 641
              +    I L +N  ++   + +    LLV++  G       SE     R G       
Sbjct: 807 RNTSGVKGISLKNNAYMLGMEISNGKGDLLVITENGYGKRTPISEYSLQHRGGQGVTTIA 866

Query: 642 LKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD 699
           +       +     V   H + ++ E   ++      I    R  +GV++ +        
Sbjct: 867 MTSKKGA-LVACRVVGPQHELMIMSEEGVMIRVKSMDISSSGRATQGVKIMNLSSTDHVS 925

Query: 700 VIC 702
            + 
Sbjct: 926 AMA 928


>gi|119505049|ref|ZP_01627125.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080]
 gi|119459031|gb|EAW40130.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080]
          Length = 876

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/793 (31%), Positives = 399/793 (50%), Gaps = 48/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ +   +   V  V++   L++ Y+ YA+S I  RA+PD+RDG KPVHRR++ AM+E+ 
Sbjct: 1   MAETPKEIAREVLPVNIEDELKQSYMEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGDS
Sbjct: 61  NDWNKAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VDF D Y+  +  PVV P++ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEIRMSKLAHALLADLDKETVDFVDNYDGSEQIPVVLPTRAPNLLINGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+    LA IDNPEI ++ L+EYI GPDFPTG  I+  R  IV++YR 
Sbjct: 181 GMATNIPPHNLREVVAGCLAFIDNPEIDVDGLMEYIPGPDFPTGA-IINGRAGIVQAYRT 239

Query: 246 GRGGFRVRARWC-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRAR   + +  RG   I++ EIPYQ+ K+RLIE+IAEL+  K++  + ++RDE
Sbjct: 240 GRGRIYVRARAEVITDESRGKDTIIIHEIPYQLNKARLIERIAELVKEKKLEGITELRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   V+    R    D+++ +++  + +++   +NM  L     P+ + L  +++ +
Sbjct: 300 SDKDGLRVVIELRRGEMGDVVLNNLYAQTQLQSVVGINMVALVD-GQPRTLNLLEMIEAF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------- 416
           + HRREV+ RR+ + ++    R  +L+GL IA +NIDEII +I+    P           
Sbjct: 359 VRHRREVVTRRTVYLLRKARERGHVLEGLAIALVNIDEIIELIKTSPTPADAKAGLVAKP 418

Query: 417 -----------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                          S + L+  Q  AIL LRL  L  LE  ++
Sbjct: 419 WQSGEVTGMLERAGEDACRPDDLPKEFGLHGSEYFLSPAQAQAILELRLHRLTGLEHEKL 478

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E  + L E      +L    +    I  E++E+ E F          +T         
Sbjct: 479 LQEYSDKLVEIAGYLEILQDPDRLRQVIRDELKELVEEFGDDRLTEITDSTHDLSVEDLI 538

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
               + +           +    ++ +      SA   K+ D ++  L A T   IL  S
Sbjct: 539 TEEDRVVTISHGGYAKTQSLSDYQAQRRGGTGRSATAVKDEDFVEHLLIASTHATILCFS 598

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
             GK Y L   ++   S    G  +  L+ L+  + I +      Y+    + + +++G 
Sbjct: 599 DLGKVYWLKVFHIPLASRNARGRPMVNLLPLDEGERITSILPVEGYEEGHFIFMATARGI 658

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
               +  +       G   L++ +++ +       G   V ++    K + F    +  M
Sbjct: 659 VKKTDMQQFARQRSVGLRALELEADDWLVGTAVTDGSCDVMLLSSEGKAVRFQEQAVRAM 718

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R  +GVR     D      +     +  T +  + + Y +  +        RG  G + 
Sbjct: 719 GRTARGVRGIKLGDEHRLISLIVPQADS-TILTVSEKGYGKRTDTEEFPCKGRGTKGVIA 777

Query: 741 PKGFPRSGKFLSS 753
                ++G  + +
Sbjct: 778 MATTAKNGPLVGA 790



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/351 (12%), Positives = 105/351 (29%), Gaps = 21/351 (5%)

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
               + L   +          +   +  ++   +     A  ++    +         + 
Sbjct: 516 EFGDDRLTEITDSTHDLSVEDLITEEDRVVTISHGG--YAKTQSLSDYQAQRRGGTGRSA 573

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
             V     +    +       +       +   +     L S   +   +   +      
Sbjct: 574 TAVKDEDFVEHLLIASTHATILCFSDLGKVYWLKVFHIPLASRNARGRPMVNLL------ 627

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
                D G R T+   V   ++         +  +      +   +     SV L AL  
Sbjct: 628 ---PLDEGERITSILPVEGYEEGHFIFMATARGIVKKTDMQQFARQR----SVGLRALEL 680

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           +  D L        +  ++LLS++GKA       + +       ++  I L     +++ 
Sbjct: 681 EADDWLVGTAVTDGSCDVMLLSSEGKAVRFQEQAVRAMGRTARGVRG-IKLGDEHRLISL 739

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHV 661
            V  +   +L VS KG     +  E     R  K  + +     +   +  V   TGD +
Sbjct: 740 IVPQADSTILTVSEKGYGKRTDTEEFPCKGRGTKGVIAMATTAKNGPLVGAVQVSTGDEI 799

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            ++ +    +   +++I  + R  +GVR+   ++      +   + +    
Sbjct: 800 MLISDQGTAVRTRVEEISTLGRNTQGVRVIKTREDEKLVRLSRIVEDDDAV 850


>gi|283797180|ref|ZP_06346333.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
 gi|291075138|gb|EFE12502.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
          Length = 855

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/762 (31%), Positives = 387/762 (50%), Gaps = 34/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  + L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VDF   ++E + EPVV PS+FPNLLANGTSGIAVGMAT+IP H
Sbjct: 127 RLSRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      + SIE+L+E + GPDFPTG  I+  +  I E+YR GRG 
Sbjct: 187 NLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATIL-GKAGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTEIPY V K+RLIEKIAEL+  KR+  + D+RDES  + 
Sbjct: 246 IRVRAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  +   + ++  F +NM  L     P+V+ L  +L  +L H++
Sbjct: 306 MRICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALV-NNEPKVLNLHQMLTYYLDHQK 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
           +V+ RR+ + +   + R  IL+GLL A   IDE+I IIR            + RF L++ 
Sbjct: 365 DVVTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMERFELSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++ +E   L     ++  +L    +    I  EI+ + + +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLLNEYQELEKRIAELRGILADENKLLTVIKEEIQLISDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSV 538
                   RRT        +     + +I  E + V I+N G+I+ +             
Sbjct: 485 GD-----DRRTKI---GYDEFDMSAEDLIPDEDVVVAITNLGYIKRMSSDNFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +  +   + D ++  L   T   ++  +  G+ Y L A  +        G AI  LI L
Sbjct: 537 GIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLIQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        +D    L + +  G        E     + G   + +  ++++  V
Sbjct: 597 QPGEKITATVPMKEFDEDKFLFMATKNGMVKRTPMKEYENVRKNGLQAIVLREDDELIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
                 + + +V +    + F    +    R   GV    +        +     +G   
Sbjct: 657 KATDNTEDIFLVTKKGMCIRFHETDVRITGRVSMGVIGMKFDSDDEIIGMQMA-SQGECL 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +     +           RGG G    +   ++G  + +
Sbjct: 716 LVVSEYGLGKRTPIEEFTSQLRGGKGVRCYRITEKTGYLVGA 757



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 64/203 (31%), Gaps = 10/203 (4%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +  +   V  +      +++ +   L A+  +E D L        T+ I L++  G   
Sbjct: 618 FMATKNGMVKRTPMKEYENVRKN--GLQAIVLREDDELIEVKATDNTEDIFLVTKKGMCI 675

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                ++         +  +   + + +I+   +      LLVVS  G        E  +
Sbjct: 676 RFHETDVRITGRVSMGVIGM-KFDSDDEIIGMQMASQGECLLVVSEYGLGKRTPIEEFTS 734

Query: 634 NTRKGKTF----LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
             R GK      +   +   +     V  G  + ++     ++   ++ I  + R   GV
Sbjct: 735 QLRGGKGVRCYRITEKTG-YLVGAKLVDEGRQIMLITNEGIIIKMRVNTISIIGRNTSGV 793

Query: 688 RLQSYKDGGISDVICFKICEGLT 710
           +L          V         +
Sbjct: 794 KLMDIDPESGVVVASIAKVRESS 816


>gi|126724334|ref|ZP_01740177.1| DNA topoisomerase IV subunit A [Rhodobacterales bacterium HTCC2150]
 gi|126705498|gb|EBA04588.1| DNA topoisomerase IV subunit A [Rhodobacterales bacterium HTCC2150]
          Length = 769

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/771 (50%), Positives = 533/771 (69%), Gaps = 29/771 (3%)

Query: 6   ISNSNTLVEENVKAV--SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++   V+     +   LR AL +RYL YALSTI  RA+PD RDG KPVHRRI++AM+ 
Sbjct: 1   MNDTIDPVDTPETEITEPLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMNR 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSASGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT VAE +L+G+ E+AVD+RD Y+    EPVV P+ FPNLLANG++GI
Sbjct: 121 DNPAASRYTEARMTVVAEAMLEGLSENAVDYRDNYDGRLEEPVVLPASFPNLLANGSTGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HNV E+C+A L LI +P    E LL+Y+ GPDFPTGG+IVE +E+I+E+Y
Sbjct: 181 AVGMATNIPPHNVAELCDACLHLIKSPNARDETLLDYVPGPDFPTGGVIVEPKENILEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+R +W  E++GRG W IVVTEIPYQVQKS+LIEK+AE+I  K+IP+L D+RD
Sbjct: 241 RTGRGSFRLRCKWETEDLGRGMWQIVVTEIPYQVQKSKLIEKLAEVIHLKKIPILGDVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+DVRI+L PK++++DPD+LM  ++  SD+E RF LNMNVL  G  P+V  L  +L+ 
Sbjct: 301 ESADDVRIILEPKSKNVDPDVLMNMLYRSSDLEVRFSLNMNVLIDGLTPKVCSLKDVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           ++ HR++VL RRS  R+  ID R+E+L+G +IA+LN+D +I IIR +D PK  ++     
Sbjct: 361 FIDHRQDVLKRRSQHRIDKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMRENWA 420

Query: 423 -----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  L+E Q +AILN+RLRSLR+LEE ++  E D L+ E+ 
Sbjct: 421 QEFVRATSESDYRSPAVADDEGELSEVQAEAILNMRLRSLRRLEEMELVRERDALMEERA 480

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +D LL+  + QW +I+ ++RE ++ F K+ + G RR+ F E +   +    +AMIE+EP
Sbjct: 481 NLDDLLSDERLQWAKISEQLRETRKTFGKNYEGGARRSQFAE-AGEVEEVPIEAMIEREP 539

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           ITVV S  GW+R+LK H+   S + FK+GD  +   HA TTDR+L+  ++G+ YTL A N
Sbjct: 540 ITVVCSKMGWVRALKGHADLTSKVKFKDGDEARFMFHAETTDRLLIFGSNGRFYTLGANN 599

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L  GRG GE ++L++DL +  +IV   ++    KLLV S+ G+ FIV E+++IA TR GK
Sbjct: 600 LPGGRGMGEPLRLMVDLPNEAEIVDILIHQPDRKLLVASTAGDGFIVPENDVIAQTRSGK 659

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
             L V    +  ++  V GDH+A VGENRK+L F + ++PEM RGKGVRLQ YKDGG+SD
Sbjct: 660 QVLNVKEGVRAFVLSPVKGDHLACVGENRKVLAFPLTELPEMGRGKGVRLQKYKDGGLSD 719

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              F + +GL+W D AGR   R+E +L  W+GKR   G + P+GFPR  +F
Sbjct: 720 ATFFTLADGLSWKDPAGR--TRTETELTEWMGKRASAGRMAPRGFPRDNRF 768


>gi|220903292|ref|YP_002478604.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867591|gb|ACL47926.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 855

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/755 (33%), Positives = 410/755 (54%), Gaps = 29/755 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +S+   L + YL Y+LS I  RAIPD RDG KPVHRRI+ A  E+  ++    KKSARI
Sbjct: 8   QISIETELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNRPHKKSARI 67

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+LVRLAQ F  R PL+ GQGNFG+IDGD+ AA RYTE RM++
Sbjct: 68  VGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDAPAAMRYTEVRMSR 127

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+  L  +D++ VDFR  Y+    EP V PSK PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 128 LAQEFLGDLDKNTVDFRPNYDNTLQEPTVMPSKVPNLLLNGSSGIAVGMATNIPPHNLGE 187

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +C+A   L+D+P+ SI+ L+E++ GPDFPT G +   +  + ++Y  GRG  +VR R  +
Sbjct: 188 LCDALQLLLDDPQCSIDDLMEHVKGPDFPTSGYVYAGK-GLYDAYHTGRGTVKVRGRMEI 246

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+  + +  IV+ EIPY + KS L+EKIA L+  ++I  + D+RDES      V+    R
Sbjct: 247 EDRKKSAQSIVIREIPYGLNKSSLVEKIAALVNDRKIDGITDLRDESDRRGIRVVIDLKR 306

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + +E+ F +NM  +   R PQ++ L   L  ++ HRREV+ RR+ +
Sbjct: 307 GTIPEIVINALYKFTPLESSFGINMLAVVDNR-PQLLNLKSALTCFVDHRREVVIRRTRY 365

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL +A  NIDE++A+IR    P       + RF L+E Q  AIL +R
Sbjct: 366 DLEKAEARAHILEGLRVAIDNIDEVVALIRASASPDEARAALMKRFELSELQAKAILEMR 425

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  L+  ++ +E  +LL + E   S+L + +    ++  EIRE++E F+       R
Sbjct: 426 LQRLTGLQREELMAEYKDLLQKIEFYRSILENTEVLRGELKREIREIRETFATP-----R 480

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           RT       A      + +I  E + + +S RG+++          K     ++AL+  +
Sbjct: 481 RTEVL--REALTDIDIEDLIPDEDVVITLSRRGYMKRTGLENYQQQKRGGKGIAALYTSD 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  L       + L +  G+ + L    +  G    +   I  L+ L   + + T 
Sbjct: 539 DDYVQEFLSTTNHQFLCLFTNKGRMHQLKVHQVPEGSRTAKGVHINNLLPLEDGEWVTTV 598

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                +      L V+ +G       S      + G   + +  ++++ +V  +  D H+
Sbjct: 599 LALREFAEDKYFLFVTKRGMVKRSSASLYARCRKTGLMAVGLREDDELVVVRPIRNDSHI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSAGRS 718
            +   +   + FS   +  M R   GV+  + +  D  ++ VI  +  +    +  +   
Sbjct: 659 VLATADGIAIRFSCKDVRPMGRVATGVKGIALRRQDFVVAGVIVKETDQTTEIMSISANG 718

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + +  +  L  L  RGG G +  K   ++G  + +
Sbjct: 719 FGKRTSIELYRLQSRGGKGIINFKVTGKTGPVVGA 753



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 11/195 (5%)

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            V  S+       +     L A+  +E D L +         I+L + DG A      ++
Sbjct: 618 MVKRSSASLYARCRKT--GLMAVGLREDDELVVVRPIRNDSHIVLATADGIAIRFSCKDV 675

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFV--YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                    ++ +     +  +    V   D T +++ +S+ G             +R G
Sbjct: 676 RPMGRVATGVKGIALRRQDFVVAGVIVKETDQTTEIMSISANGFGKRTSIELYRLQSRGG 735

Query: 639 KTFLKVS---SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK 693
           K  +          +   + V  D  + ++    K++   +D++    R   GV L    
Sbjct: 736 KGIINFKVTGKTGPVVGAMPVRDDDSLILLTSANKIVRIGLDEVRSKGRATMGVMLVRLD 795

Query: 694 DGGISDVICFKICEG 708
           +G  + V+ F   + 
Sbjct: 796 EG--AHVVGFDRVDE 808


>gi|295090283|emb|CBK76390.1| DNA gyrase subunit A [Clostridium cf. saccharolyticum K10]
          Length = 855

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/762 (30%), Positives = 387/762 (50%), Gaps = 34/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  + L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VDF   ++E + EPVV PS+FPNLLANGTSGIAVGMAT+IP H
Sbjct: 127 RLSRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      + SIE+L+E + GPDFPTG  I+  +  I E+YR G+G 
Sbjct: 187 NLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATIL-GKAGIEEAYRTGKGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTEIPY V K+RLIEKIAEL+  KR+  + D+RDES  + 
Sbjct: 246 IRVRAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  +   + ++  F +NM  L     P+V+ L  +L  +L H++
Sbjct: 306 MRICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALV-NNEPKVLNLHQMLTYYLDHQK 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
           +V+ RR+ + +   + R  IL+GLL A   IDE+I IIR            + RF L++ 
Sbjct: 365 DVVTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMERFELSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++ +E   L     ++  +L    +    I  EI+ + + +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLLNEYQELEKRIAELRGILADENKLLTVIKEEIQLISDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSV 538
                   RRT        +     + +I  E + V I+N G+I+ +             
Sbjct: 485 GD-----DRRTKI---GYDEFDMSAEDLIPDEDVVVAITNLGYIKRMSSDNFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +  +   + D ++  L   T   ++  +  G+ Y L A  +        G AI  LI L
Sbjct: 537 GIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLIQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        +D    L + +  G        E     + G   + +  ++++  V
Sbjct: 597 QPGEKITATVPMKEFDEDKFLFMATKNGMVKRTPMKEYENVRKNGLQAIVLREDDELIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
                 + + +V +    + F    +    R   GV    +        +     +G   
Sbjct: 657 KATDNTEDIFLVTKKGMCIRFHETDVRITGRVSMGVIGMKFDSDDEIIGMQMA-SQGECL 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +     +           RGG G    +   ++G  + +
Sbjct: 716 LVVSEYGLGKRTPIEEFTSQLRGGKGVRCYRITEKTGYLVGA 757



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 64/203 (31%), Gaps = 10/203 (4%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +  +   V  +      +++ +   L A+  +E D L        T+ I L++  G   
Sbjct: 618 FMATKNGMVKRTPMKEYENVRKN--GLQAIVLREDDELIEVKATDNTEDIFLVTKKGMCI 675

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                ++         +  +   + + +I+   +      LLVVS  G        E  +
Sbjct: 676 RFHETDVRITGRVSMGVIGM-KFDSDDEIIGMQMASQGECLLVVSEYGLGKRTPIEEFTS 734

Query: 634 NTRKGKTF----LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
             R GK      +   +   +     V  G  + ++     ++   ++ I  + R   GV
Sbjct: 735 QLRGGKGVRCYRITEKTG-YLVGAKLVDEGRQIMLITNEGIIIKMRVNTISIIGRNTSGV 793

Query: 688 RLQSYKDGGISDVICFKICEGLT 710
           +L          V         +
Sbjct: 794 KLMDIDPESGVVVASIAKVRESS 816


>gi|46199292|ref|YP_004959.1| DNA gyrase subunit A [Thermus thermophilus HB27]
 gi|46196917|gb|AAS81332.1| DNA gyrase subunit A [Thermus thermophilus HB27]
          Length = 805

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/757 (33%), Positives = 408/757 (53%), Gaps = 32/757 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   L++ ++ YA+S I +RA+PD+RDG KPV RRI+    + G+  G    KS
Sbjct: 3   QVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEV+GK HPHGD ++YD+LVR+AQP+  RYPLI GQGNFG+IDGD  AA RYTEAR
Sbjct: 63  AKIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++ +   +L  +D+D VDFR  Y+    EP V P+  PNLL NG SGIAVGMATS+P HN
Sbjct: 123 LSPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A+I+NP I++E+++ ++ GPDFPTGG +  S++ I E+Y  GRG  +VRA+
Sbjct: 183 LSEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGKL--SKKGIKEAYATGRGSLKVRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VEE       +VVTEIPYQV K+ LI +IA L+ AK+I  +  +RDES      +   
Sbjct: 241 VRVEE-KGQRPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P +++  ++  + ++T F +N+  +     P+V+ L  +++ +L HR+EV+ RR
Sbjct: 300 LKRGANPQVVLNQLYKHTALQTSFTVNLLAIVD-GEPKVLSLLDLMRHYLDHRKEVVRRR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAIL 432
           S F ++  + R  +L+GLLIA  +IDE+IA+IR  +         + RF L+E Q  AIL
Sbjct: 359 SLFELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMERFGLSEAQAQAIL 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  ++  E   L+ E  ++ ++L    +   ++  ++  VKE +  +   
Sbjct: 419 DMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEARLLAEVKADLLRVKEKYGDA--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALH 544
             RRT   E          + +IE EP+ + ++ +G+++ L   S          L A  
Sbjct: 476 --RRTLITEFEETFNP---EDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAGR 530

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602
            KE D       A   D +LL +  G+ Y L    L     +  G  ++ L+ L  ++++
Sbjct: 531 TKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARGVHVKSLLPLAEDEEV 590

Query: 603 VTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-G 658
                    D    L+  + +G        E     + G   +++   +++  V      
Sbjct: 591 AALLSVRGLDQEGHLVFATERGLVKRTALKEYQNLGQAGLIAIRLQEGDRLVGVALSDPE 650

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSA 715
           D   +  +  + + F ++++    R  +GV    +K  +  +  ++  K  E +  +  +
Sbjct: 651 DEAILATQEGQAIRFPLEEVRATGRDTQGVIGVRFKKPEDRVVSLVVVKPGEMVDLLSVS 710

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            R Y +        L  RGG+G +      + G+  +
Sbjct: 711 TRGYGKRTPLSEYPLQGRGGMGVITYAVSTKVGRLAA 747



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 7/157 (4%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLV 616
             D  +L + +G+A   P   + +     + +  +        +V+  V        LL 
Sbjct: 649 PEDEAILATQEGQAIRFPLEEVRATGRDTQGVIGVRFKKPEDRVVSLVVVKPGEMVDLLS 708

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           VS++G       SE     R G   +             L+    G+ + V+      + 
Sbjct: 709 VSTRGYGKRTPLSEYPLQGRGGMGVITYAVSTKVGRLAALLKVRGGEDLLVLSRRGLAIR 768

Query: 673 FSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
             + +I + SR   GVR+ +  +            E 
Sbjct: 769 TPVAEIRQYSRATAGVRVMNLPEDDEVASAFVVEEEK 805


>gi|238898606|ref|YP_002924287.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466365|gb|ACQ68139.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 844

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/790 (32%), Positives = 391/790 (49%), Gaps = 50/790 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + + +  +++   L + YL YA+S I  RA+PD+RDGFKPVHRR+++AM  +G D+  
Sbjct: 2   SQLAKEIIPINIEQELTDSYLEYAMSVIIGRALPDVRDGFKPVHRRVLYAMKVLGNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  AYKKSARVVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYMLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  IL  +D+D V+F   Y+E +  P V P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMSKIAHEILADLDKDTVNFVPNYDETEQIPEVMPTKIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+  A LA ID+  IS+E L++++ GPDFPT G I+   + I ++Y  GRG  
Sbjct: 182 IPPHNISEVIAACLAYIDDENISVEHLMKHMPGPDFPTAG-IIYGSKGIEQAYGTGRGRI 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  +E +   G   I+V EIPYQV K++LIEKIAEL+  KR+  +  +RDES ++ 
Sbjct: 241 YIRAKANIEVDEKSGRQSIIVDEIPYQVNKTKLIEKIAELVKEKRLEGISCLRDESDKEG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +L    R    ++++  ++ L+ ++  F +NM  L     P+VM L  IL+ ++ HRR
Sbjct: 301 MRILIELKRDAIAEVILNQLYSLTQLQVSFGINMVALDH-GQPKVMTLKDILRAFIRHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------- 415
           EV+ RR+ F ++    R  IL+ L +A  NID II +IRN   P                
Sbjct: 360 EVVTRRTLFELRKARDRAHILEALAVALANIDVIIQLIRNAGNPTQAKTGLLAQAWPLGH 419

Query: 416 -------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                    +    +  TE Q  AIL+LRL+ L  LE   + +E
Sbjct: 420 VTSMLDCVGDEKDIARPEWLEARFGIHNGEYHFTEQQAQAILDLRLQKLTGLEHDNLLNE 479

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              LL    ++  +L+   +    I  E   +K  +        +  T            
Sbjct: 480 YKELLNAIHELQKILSDPDRLLEVIREEFLSIKAQYHDPRRTEIKINTADIHLEDLIPQE 539

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              +       +         +        SA   K+ D ++  L A+T D IL  S+ G
Sbjct: 540 DVVVTLSHQGYIKYQPLSDYEAQHRGGKGKSAARTKDEDFIERLLVANTHDNILCFSSRG 599

Query: 571 KAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y L    L        G  I  L+ LN ++ I        Y++   + + ++ G    
Sbjct: 600 RLYWLKVYQLPEASRGSRGRPIVNLLPLNPDERITAILPIKNYETGQYVFMATACGVVKK 659

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
           +   E       G   L +   +++  V    G + V +     K++ FS D +  M R 
Sbjct: 660 IALLEFSRPRSTGIYTLNLDDGDELIGVDLTDGTNEVMLFSSKGKVIRFSEDDVRAMGRT 719

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GV             +     +G   +      Y +  +        R G+G +  K 
Sbjct: 720 ARGVGGIRLAQEDRVVSLIIPRGDGD-ILTVTANGYGKKTSKEEYPTRSRNGMGVISIKV 778

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 779 NGRNGNVVGA 788


>gi|294792425|ref|ZP_06757572.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27]
 gi|294456324|gb|EFG24687.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27]
          Length = 803

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/740 (34%), Positives = 388/740 (52%), Gaps = 15/740 (2%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKSARIVG+V+GK
Sbjct: 1   MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITTEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+C     
Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP++++++L+  I GPDFPTG  ++  RE I ++Y  GRG  ++RAR  +EE+ +G 
Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGA-LILGREGIKKAYSTGRGSVKMRARATIEEMSKGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVVTEIPYQV K+R+IE IA L   K I  +  +RDES      ++      + PD++
Sbjct: 240 HKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++  F + M  L     P+V+ L  +L  +L HR +V+ RR+ F +   + 
Sbjct: 300 LNKLYKHTQLQETFGVIMLALVD-GHPRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEA 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GLLIA  +IDE+IA IR+       +  ++ +F L+E Q  AIL++RLR L  L
Sbjct: 359 RAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAILDMRLRRLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+ E   LLA  E + ++L S  +Q   I  E+ ++K+ +           T    
Sbjct: 419 EREKIEEEYKELLALIEDLKAILASEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLD 478

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                A  +  +   +   +   N    R+       +  +  KE D +   +H  T + 
Sbjct: 479 VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNT 538

Query: 563 ILLLSTDGKAYTLPAGNLLS---GRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLV 616
           +L  ++ G+AY L A  +         G A+  ++ L   + + T    +       L +
Sbjct: 539 LLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDLERVHEDVNLFM 598

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-GENRKLLIFSI 675
           V+  G        E     R G   + +   +++  V   TG+   ++  +    + FS 
Sbjct: 599 VTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSE 658

Query: 676 DQIPEMSRGK-GVRLQSYKDGGISDVICF--KICEGLTWIDSAGRSYNRSENDLLGWLGK 732
             +  M R   GVR      G +                   +   + +  +     L K
Sbjct: 659 HDVRLMKRAAHGVRGIKLNAGDVVVGAGVLNTDESEAQVFTISEEGFGKRNDAEAYTLQK 718

Query: 733 RGGVGSLVPKGFPRSGKFLS 752
           RGG GS   K   ++G  ++
Sbjct: 719 RGGKGSKNFKITNKTGDVVA 738



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 10/197 (5%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+               L+A++  EGD L           IL+ +  G A      ++  
Sbjct: 604 VVKRTAIEEYRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRL 663

Query: 583 GRGHGEAIQLLIDLNHNQDIVT--AFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGK 639
            +         I LN    +V       D    ++  +S +G     +        R GK
Sbjct: 664 MKRAA-HGVRGIKLNAGDVVVGAGVLNTDESEAQVFTISEEGFGKRNDAEAYTLQKRGGK 722

Query: 640 TF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE-MSRG-KGVRLQSYK 693
                 +   + + + + V    D V ++ E  K++ F+++ I     +   GV+ Q+  
Sbjct: 723 GSKNFKITNKTGDVVAVEVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLD 782

Query: 694 DGGISDVICFKICEGLT 710
           +G     I       + 
Sbjct: 783 EGDKVASIAVIPGAEIE 799


>gi|266620983|ref|ZP_06113918.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479]
 gi|288867364|gb|EFC99662.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479]
          Length = 840

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/762 (31%), Positives = 393/762 (51%), Gaps = 34/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        +K
Sbjct: 7   DKVHEVDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++V+  +L  + ++ VDF   ++E + EPVV P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKVSMEMLADIGKNTVDFTPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAA-----LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A        + +N E  +E++LE I GPDFPTG  I+  +  I E+YR GRG 
Sbjct: 187 NLREVIGAVVKIIDNHVEENRETEMEEVLEIIKGPDFPTGATIL-GKMGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEK+AEL   K+I  + D+RDES    
Sbjct: 246 IRVRAVTDIETLPNGKSRIIVTELPYMVNKARLIEKMAELAKEKKIDGITDLRDESDRSG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R ++ ++++  +   + ++  F + M  L     P+V+ L  +LK +L H++
Sbjct: 306 MRIVIELRRDVNANVILNQLLKHTQLQDTFGVIMLALV-NNEPRVLNLMQMLKLYLEHQK 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIRN    +     ++ RF L++ 
Sbjct: 365 EVVTRRTQYDLNKAEERAHILQGLLIALDNIDEVIKIIRNSQNVQIAKAELMERFGLSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L A+ E++ ++L   K+    I  EI  + + +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLENEFKELEAKIEELRAILADEKKLLGVIREEIMLISDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSV 538
                   RRT+       +     + +I  E   V ++  G+I+ +             
Sbjct: 485 GD-----DRRTSI---GFDEFDMSMEDLIPDENTIVAMTKLGYIKRMSVDNFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP--AGNLLSGRGHGEAIQLLIDL 596
            +  +   + D ++  +       I+  +  G+ Y L   A    S    G AI  L+ L
Sbjct: 537 GIKGMQTIDQDYIEDLIMTTNHHYIMFFTNTGRVYRLKTYAIPEGSRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        YD    L + +  G        E     + G   + +  ++++  V
Sbjct: 597 LPGESITAIIPMKEYDDDKFLFMATKNGMVKKTPMMEYANVRKNGLQAIVLREDDELIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
                   + ++ +  + + F+   +    R   GV      D      +     +G   
Sbjct: 657 KATDNSKDIFLITKMGQCIRFNETDVRVTGRVSMGVIGMKLNDDDEVVGMQM-DTQGEKL 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +     +          KRGG G L  K   ++GK + +
Sbjct: 716 LIVSENGMGKRTPIDEFTPQKRGGKGVLCYKITEKTGKIVGA 757



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 86/276 (31%), Gaps = 19/276 (6%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +     Y +       +   +       S   +   I   ++ +          G   T 
Sbjct: 554 MTTNHHYIMFFTNTGRVYRLKTYAIPEGSRTARGTAIINLLQLL---------PGESITA 604

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              +        +   +  +   V  +      +++ +   L A+  +E D L       
Sbjct: 605 IIPMKE--YDDDKFLFMATKNGMVKKTPMMEYANVRKN--GLQAIVLREDDELIEVKATD 660

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
            +  I L++  G+       ++         +  +  LN + ++V   +     KLL+VS
Sbjct: 661 NSKDIFLITKMGQCIRFNETDVRVTGRVSMGVIGM-KLNDDDEVVGMQMDTQGEKLLIVS 719

Query: 619 SKGNAFIVEESEIIANTRKGKTFL--KVSSE-EKMKLVVKVTGDH-VAVVGENRKLLIFS 674
             G        E     R GK  L  K++ +  K+     V  DH + ++     ++  S
Sbjct: 720 ENGMGKRTPIDEFTPQKRGGKGVLCYKITEKTGKIVGAKLVHDDHDIMIITNEGIVIRIS 779

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           ++ I  + R   GV+L +        V         
Sbjct: 780 VEDISVIGRNTSGVKLMNIDQESDIRVASIAKVRDD 815


>gi|224541293|ref|ZP_03681832.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525797|gb|EEF94902.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM
           15897]
          Length = 815

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/762 (31%), Positives = 406/762 (53%), Gaps = 33/762 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +K + L   +++ ++ YA+S I  RA+PD +DG KPV RRIIH M+E+G      
Sbjct: 1   MEQRGIKDIQLTGEMKKSFMEYAMSVIVARALPDAKDGLKPVQRRIIHGMNELGCYSDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD S+Y++LVR+AQ F  RY L+ G GNFG+IDGD AAA RY
Sbjct: 61  YKKSARIVGEVMGKYHPHGDSSIYEALVRMAQGFSYRYMLVDGHGNFGSIDGDGAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RM+++A  +++ +++D VDF   Y+ E+ EP V PS+ PNLL NG++GIAVGMAT+I
Sbjct: 121 TESRMSKIAMEMVRDINKDTVDFVPNYDGEEKEPNVLPSRIPNLLINGSTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           PSHN+ E+ +A LA+  NP+I+I + +  YI GPDFPTG  I+  R +I ++Y  G G  
Sbjct: 181 PSHNLGEVVDAILAVSKNPDITITELMDNYIPGPDFPTGAYIL-GRGAIKKAYETGNGLI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +E++G     I+VTE+PY V K+RLIEKIA  +  K I  + ++RDES  +  
Sbjct: 240 VMRAKTDIEDIGSNKKAIIVTELPYMVNKARLIEKIAAHVKEKNIDGITELRDESDREGI 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R + P++++  ++ L+ ++T F +N   L     P+ + L  ++  +L H+ +
Sbjct: 300 RIVIELRRDVQPEVILNQLYKLTALQTTFGVNNIALV-NGEPKTLSLKEMINVYLEHQED 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F ++  + R  IL GL  A   ID II +IR+       +  ++  F ++E Q
Sbjct: 359 VIRRRTLFDLKKAEDRAHILDGLKRAIDQIDAIINLIRSSRTTEIIQQRLMDEFDMSERQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI  ++L+ L  LE  +I++EL+ LL     +  +L + ++    I  E+ E+K  + 
Sbjct: 419 AKAIREMQLQRLAGLEREKIENELNTLLETIADLKDILANKERIIAIIDQELLEIKAKYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                 +RRT   +          + +I +E + + ++N G+++ +   +          
Sbjct: 479 D-----KRRTEIIQ---GSFDIEDEDLIPEEDVVISLTNNGYVKRMPIDTYKAQNRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +     D +   ++  T D +L+ +  GK Y +   N+       +   I  L++++
Sbjct: 531 IKGMSTNNDDVVDSLMNMSTHDDLLIFTNFGKVYRMKGYNIPEFGRQAKGLPIINLLNMD 590

Query: 598 HNQDIVTAFV-----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            ++ + T         D +  L  V+  G        E     + GK  L +   +++  
Sbjct: 591 KDEQVKTMISITPSEVDESHFLFFVTKDGLVKRTGLPEFENIRQSGKLALTLREGDELVD 650

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V    G   + +   N K + F  + +  M R   GV+  +  D  I  V      EG  
Sbjct: 651 VKLTNGKSEILLAAANGKAIRFDENDVRPMGRSASGVKGMNVDDSHIIGVTT--NTEGQN 708

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    + Y +        L KRGG G        ++G+ +S
Sbjct: 709 ILIITEKGYGKMSPLEEYRLSKRGGKGVKTVNITEKNGELVS 750



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 5/111 (4%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT 657
            I+          +L+++ KG   +    E   + R GK    V+      ++  +  V 
Sbjct: 696 HIIGVTTNTEGQNILIITEKGYGKMSPLEEYRLSKRGGKGVKTVNITEKNGELVSIKAVE 755

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
           G + + ++     ++   ++Q+    R  +GVRL    +G     I     
Sbjct: 756 GNEDLMIITNEGIIIRLPMEQVKSAGRATQGVRLIKVGEGASVSSITVVDK 806


>gi|39935769|ref|NP_948045.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris CGA009]
 gi|39649622|emb|CAE28144.1| DNA topoisomerase IV subunitA [Rhodopseudomonas palustris CGA009]
          Length = 753

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/737 (56%), Positives = 545/737 (73%), Gaps = 2/737 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKS
Sbjct: 12  EIHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEAR
Sbjct: 72  AKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L G+DED V FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN
Sbjct: 132 MTDVARLLLDGIDEDGVAFRANYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LI+ P+   + LL ++ GPDFPTGGII++S+ESI E+Y  GRG FR RA+
Sbjct: 192 AAELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAEAYTTGRGAFRTRAK 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE  RG+W +VVT+IP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVRIV+ P
Sbjct: 252 WEQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRIVIEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+RS+DP L+MES+F L+++E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL RR
Sbjct: 312 KSRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S +R   I+ R+E+L G LIAYLNID++I IIR ED+PKPV++  F+LTE Q +AILN+R
Sbjct: 372 SEYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTEIQAEAILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE++I++E  NL AE + I+++L S  +QW ++  ++R+V+E+F   T LG+R
Sbjct: 432 LRSLRKLEEFEIRTEDKNLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L+FK+ D L  + 
Sbjct: 492 RTQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDKLGQSF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A TT ++LLL+T+G+ Y L    L  GRGHGE I++ ID+  +  IVT FV+    K L
Sbjct: 552 FAETTSKLLLLATNGRFYALDVAKLPGGRGHGEPIRMFIDMEQDAAIVTVFVHTGGRKFL 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+V E E + +TRKGK  L V   +E +   VV    D +AV+G+NRK++IF
Sbjct: 612 IASHDGQGFVVNEDECVGSTRKGKQILNVDVPNEARALTVVSEGDDSIAVIGDNRKMVIF 671

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            +DQ+PEM+RG+GVRLQ YKDGG+SD+  F   +GL W DSAGR ++ +  +L  W G R
Sbjct: 672 PLDQVPEMTRGRGVRLQKYKDGGLSDIATFSSKQGLGWRDSAGREFSATMKELAEWRGNR 731

Query: 734 GGVGSLVPKGFPRSGKF 750
              G L PKGFP+S KF
Sbjct: 732 ADAGRLPPKGFPKSNKF 748


>gi|325287312|ref|YP_004263102.1| DNA gyrase subunit A [Cellulophaga lytica DSM 7489]
 gi|324322766|gb|ADY30231.1| DNA gyrase, A subunit [Cellulophaga lytica DSM 7489]
          Length = 851

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 411/762 (53%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKIIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A+ +L  +++D VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKIADDMLADIEKDTVDHQLNFDDSLKEPTVLPARIPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L+ +I  PDFPTGG I+   + + E+++ GRG   +RA
Sbjct: 185 NLSEVVDGTVAYIDNKDIEIDELITHIKAPDFPTGG-IIYGYDGVREAFKTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G   IVVTEIPYQV K+ +I+K A+LI  K+I  +  IRDES  +   +++
Sbjct: 244 KATFEEV-QGRESIVVTEIPYQVNKADMIKKTADLINDKKIEGISTIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  + ++T F +N   L     PQ++ +  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNTLFKYTALQTSFSVNNIALV-NGRPQLLNVKEMIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IAIIR     D+ +  ++ RF L+E Q  AI
Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIAIIRGSSNADEARENLIKRFELSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D ++     +  +L + +++   I  E+ EVKE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDEIIKTIADLKDILANEERRMQIIKDELLEVKEKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+   E++ A      + MI  E + + IS+ G+I+              V   A 
Sbjct: 480 ---RRS---EINFAGGDLSIEDMIPDEQVVITISHAGYIKRTPLSEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             +  D L+          +L  +  GK + +    +  G    +  AIQ LI++  +  
Sbjct: 534 STRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSKTSKGRAIQNLINIEQDDK 593

Query: 602 IVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           ++               +  +++ + KG        +       G   + +   +++   
Sbjct: 594 VMAFICTQDLKDEEYVNSHYVIMATKKGTVKKTSLEQYSRPRLNGINAIGIKEGDELLEA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
              TG   + +  ++ K + F   +   M R   GVR  +  D     V    +      
Sbjct: 654 KLTTGTSQIFLGLKSGKAIRFEESKTRPMGRNASGVRGITLADDNDEVVGMVSVHNFDDD 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + + Y +  +     +  RGG G        ++G  ++
Sbjct: 714 ILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVTDKTGGLVA 755



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 90/258 (34%), Gaps = 10/258 (3%)

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               +    +         I+ +  I      +    T   ++   +       ++  + 
Sbjct: 563 FWMRVYEIPEGSKTSKGRAIQNLINIEQDDKVMAFICTQ--DLKDEEYVNSHYVIMATKK 620

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            TV  ++       + +   ++A+  KEGD L  A     T +I L    GKA       
Sbjct: 621 GTVKKTSLEQYSRPRLN--GINAIGIKEGDELLEAKLTTGTSQIFLGLKSGKAIRFEESK 678

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                 +   ++ +   + N ++V    V++    +LVVS KG        +     R G
Sbjct: 679 TRPMGRNASGVRGITLADDNDEVVGMVSVHNFDDDILVVSEKGYGKRSSLEDYRITNRGG 738

Query: 639 KTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK 693
           K    +S  +K   +  +  VT  D + ++ ++   +   ++ +  M R  +GVRL + K
Sbjct: 739 KGVKTISVTDKTGGLVAIKNVTDSDDLMIINKSGIAIRMGVEDLRVMGRATQGVRLINIK 798

Query: 694 DGGISDVICFKICEGLTW 711
                  +   + +    
Sbjct: 799 GKDSIAAVAKVMKDEDAV 816


>gi|86749737|ref|YP_486233.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris HaA2]
 gi|86572765|gb|ABD07322.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris HaA2]
          Length = 753

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/737 (56%), Positives = 548/737 (74%), Gaps = 2/737 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKS
Sbjct: 12  EIHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEAR
Sbjct: 72  AKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L G+DED V FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN
Sbjct: 132 MTDVARLLLDGIDEDGVAFRPNYDGQAKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LID P+   + LL ++ GPDFPTGGI+++S+ESI E+Y  GRG FR RA+
Sbjct: 192 AAELCDAALHLIDKPDAKTKALLRFVKGPDFPTGGIVIDSKESIAEAYTTGRGAFRTRAK 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE  RG+W +VVTEIP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVR+V+ P
Sbjct: 252 WMQEEGARGTWVVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRVVIEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++DP L+MES+F L+++E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL RR
Sbjct: 312 KSRAVDPALMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S++R   I+ R+E+L G LIAYLNID++I IIR ED+PKPV++  F+LT+ Q +AILN+R
Sbjct: 372 SNYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTDVQAEAILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE++I++E  NL AE + I+++L S  +QW ++  ++R+V+E+F   T LG+R
Sbjct: 432 LRSLRKLEEFEIRTEDKNLRAELKGINAILKSETEQWAKVGEQVRKVREMFGPKTPLGKR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L+FK+ D L  A 
Sbjct: 492 RTQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVADLSGLNFKQDDKLDRAF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A TT ++LLL+T+G+ Y+L    L  GRGHGE I++ ID+  +  IV  FV+    K L
Sbjct: 552 FAETTSKLLLLATNGRFYSLEVAKLPGGRGHGEPIRMFIDMEQDAAIVAMFVHKGGRKFL 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+V E + +  TRKGK  + V   +E +   VV    D+VAV+G+NRK+LIF
Sbjct: 612 IASHDGQGFVVGEDDCVGTTRKGKQIINVEMPNEARALTVVGDGSDNVAVIGDNRKMLIF 671

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            +DQ+PEM+RG+GVRLQ YKDGG+SD++ F   EGL+W DSAGR ++ +  +L  W G R
Sbjct: 672 PLDQVPEMARGRGVRLQKYKDGGLSDIVTFVAKEGLSWRDSAGREFSATMKELAEWRGNR 731

Query: 734 GGVGSLVPKGFPRSGKF 750
              G + PKGFP+S KF
Sbjct: 732 ADAGRMPPKGFPKSNKF 748


>gi|113461306|ref|YP_719375.1| DNA gyrase subunit A [Haemophilus somnus 129PT]
 gi|170717841|ref|YP_001784900.1| DNA gyrase subunit A [Haemophilus somnus 2336]
 gi|112823349|gb|ABI25438.1| DNA gyrase subunit A [Haemophilus somnus 129PT]
 gi|168825970|gb|ACA31341.1| DNA gyrase, A subunit [Haemophilus somnus 2336]
          Length = 881

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/819 (30%), Positives = 401/819 (48%), Gaps = 77/819 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++       NV  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +  
Sbjct: 1   MTDFTP----NVTPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSS 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
             +  A+ KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+
Sbjct: 57  NTYNKAYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDA 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAV
Sbjct: 117 PAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPTLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA +DN EISI++L++YI GPDFPT   ++  R+ I E+Y+ 
Sbjct: 177 GMATNIPPHNLNEVLDGCLAYVDNEEISIDELMQYIPGPDFPTAA-LINGRKGIEEAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +E   +G   IVVTEIPYQV K++L+EKIAEL+  K+I  + ++RD S
Sbjct: 236 GRGKIYVRAKAEIETNDKGRETIVVTEIPYQVNKAKLVEKIAELVREKKIEGISNVRDVS 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   V     R    ++++ +++ L+ M+  F +NM  L     P+++ L  I++ ++
Sbjct: 296 NKEGNRVEVEVKRDAVGEVVLNNLYALTQMQVTFGINMVALDH-GQPKLLNLKQIIEAFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IR                 
Sbjct: 355 RHRREVITRRTVFELRKARERAHILEGLAIALANIDPVIELIRASKTADEARVGLLSQAW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      ++  ++ L++ Q  AIL+LRL+ L  LE  +I 
Sbjct: 415 ELGNVATMLSATGVDSSRPDNLADNLGIIDGKYYLSDEQARAILDLRLQRLTGLEHEKIV 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L E  K+  +LNS  +    +  E+ +VKE F  +        +          
Sbjct: 475 TEYQEILIEIGKLLHILNSADRLKEVLCEELEKVKEEFGDARRTEITSASGDINLEDLIT 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  S+
Sbjct: 535 QEDVIVTLSHAGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G  
Sbjct: 595 RGRLYWLKVYQLPQANRGARGRPIVNILPLQENERITAILPVAAYEEDKFIVMATAGGLV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
             +  +E       G   L +  E+++  V    G + + +     +++ F  + +  M 
Sbjct: 655 KKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGTNEIMLFSSQGRVVRFEENAVRAMG 714

Query: 683 R-GKGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDS 714
           R   GVR                               D  +  V+   I +     + +
Sbjct: 715 RLATGVRGIKLALTNDISDDESAVEIEDISDEDTKEPLDLNVDKVVSLVIPKNDGAILTA 774

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           R   G +  K   R+GK +++
Sbjct: 775 TQNGYGKRTALSEYPTKSRNTKGVISIKVSDRNGKVVAA 813



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 8/120 (6%)

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
             +V+  +  +   +L  +  G       SE    +R  K  + +   ++   VV  T  
Sbjct: 757 DKVVSLVIPKNDGAILTATQNGYGKRTALSEYPTKSRNTKGVISIKVSDRNGKVVAATQV 816

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKICEGLTW 711
              D + ++ +   L+   + +I  + R  +GVRL    +         +C    +    
Sbjct: 817 EENDQIMLITDAGTLVRTRVSEISIVGRNTQGVRLIRTAETEQVVSLERVCDTDEDEENI 876


>gi|293365593|ref|ZP_06612302.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307703544|ref|ZP_07640486.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037]
 gi|291315961|gb|EFE56405.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307622951|gb|EFO01946.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037]
          Length = 822

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 395/760 (51%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +         + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----KRRTEL--MIGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRYGVVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GVR  + ++G           +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRGVNLREGDTVVGASVITNQDE-VL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKNGPLAG 750


>gi|303258855|ref|ZP_07344834.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293]
 gi|303261539|ref|ZP_07347486.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292]
 gi|303264209|ref|ZP_07350129.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397]
 gi|303266160|ref|ZP_07352053.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457]
 gi|303268113|ref|ZP_07353913.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458]
 gi|302637119|gb|EFL67607.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292]
 gi|302639798|gb|EFL70254.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293]
 gi|302642330|gb|EFL72677.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458]
 gi|302644330|gb|EFL74584.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457]
 gi|302646021|gb|EFL76248.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397]
          Length = 822

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDTYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|282881768|ref|ZP_06290426.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B]
 gi|281298378|gb|EFA90816.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B]
          Length = 809

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/758 (32%), Positives = 404/758 (53%), Gaps = 14/758 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++    E  +  V +   +   YL Y++S I  RA+PD+RDG KPVHRRI++ MSE+ 
Sbjct: 1   MTDTKEF-ENGIFDVDISKKMRASYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELN 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  G ++KKSAR+VG+V+GK HPHGD S+Y++ VRLAQ F  RYPL+ GQGNFGNIDGD 
Sbjct: 60  LVSGGSYKKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDG 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE +MT++AE +L+ +++D V+F   ++ +  EP + PS+FPNLL NG+SGIAV
Sbjct: 120 AAAMRYTEVKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+ +  +  IDN +ISI +L E I GPDFPTG  ++  R+ I ++Y+ 
Sbjct: 180 GMATNMPPHNMNEVIDGIVKYIDNDDISISELQEVIKGPDFPTGA-LIMGRDGINKAYKT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA   + E  +G   I++TE+PYQV KS L+ KIAEL   K I  +  I D S
Sbjct: 239 GRGKITVRAVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSS 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    ++    +  + ++++  ++  + ++  + +    L     PQ++ L  +++ ++
Sbjct: 299 NKRGIRIVIDLKKDANANVVLNKLYKETQLQITYGIINLALV-NGRPQILNLKELIRYYV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ EV+ RR+ F +   + R  I++GL IA  NID +I IIR+              FS
Sbjct: 358 DHQVEVITRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKFDREFS 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q  AIL++RL+ L  LE  ++++E D LL + ++   +L +       I  E+ E+
Sbjct: 418 LTQIQSQAILDMRLKRLTGLEREKLQNEYDKLLEDIKRFKEILENNHVLMELIKTELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ +        + +                +   +   +     G  +  K     ++A
Sbjct: 478 KDKYGDLRRTVIKSSESDIDIEDIIKEEDVIITLTQMGYIKRMPEGTYKPQKRGGRGITA 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           L  KE D +K      T DR+L  +  GK Y L A  +     + +  A+  L++L+  +
Sbjct: 538 LTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFEVPEAGRNAKGTAVVNLLNLDKGE 597

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I +      +D    LL+V+ KG        E     + G   +K+  ++K+  V  V 
Sbjct: 598 KITSVINVEEFDPNYYLLMVTEKGLIKKTSNKEFKNIRQNGLIGIKLRDDDKLISVHLVR 657

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           GD  + +V +  K + FS D++ +  R   GV+  +  +     V    + +G   +  +
Sbjct: 658 GDEEIILVTKEGKSIRFSTDELRDQGRNTMGVKSMNLDEDDTI-VSSDIVGDGNYLLTVS 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +           RGG G    K   ++GK  ++
Sbjct: 717 ENGFGKLTELKEYRPQNRGGKGIFTYKISEKTGKVSAA 754



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 6/181 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                         L  +  ++ D L         + I+L++ +GK+       L     
Sbjct: 625 KTSNKEFKNIRQNGLIGIKLRDDDKLISVHLVRGDEEIILVTKEGKSIRFSTDELRDQGR 684

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           +   ++ + +L+ +  IV++ +      LL VS  G   + E  E     R GK      
Sbjct: 685 NTMGVKSM-NLDEDDTIVSSDIVGDGNYLLTVSENGFGKLTELKEYRPQNRGGKGIFTYK 743

Query: 646 SEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
             EK   V   +     D + ++ ++  ++   ID I   SR   GV+L +  D  +  +
Sbjct: 744 ISEKTGKVSAASVVNKSDDIMLIADSGIIIRLLIDDISVTSRNTMGVKLMNLNDSKVVAI 803

Query: 701 I 701
            
Sbjct: 804 A 804


>gi|19746099|ref|NP_607235.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS8232]
 gi|73919728|sp|Q8P116|GYRA_STRP8 RecName: Full=DNA gyrase subunit A
 gi|19748272|gb|AAL97734.1| DNA gyrase A subunit [Streptococcus pyogenes MGAS8232]
          Length = 828

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/753 (31%), Positives = 391/753 (51%), Gaps = 15/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ ++T F     +     VP+++ L  I+  ++++++EV
Sbjct: 300 FVIEIRREASATVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLRQIIDNYISYQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 IIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
                        +   D    +  +I       +    +   R+ K     +       
Sbjct: 479 PRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNN 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L   + I T 
Sbjct: 539 DDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTI 598

Query: 606 FVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                           + +G     E SE     + G   LK+   +++  V+  +G D 
Sbjct: 599 INARKEETAGKSFFFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDD 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +   +   + F+   I  M R   GVR    ++     V   +I +    +      +
Sbjct: 659 IIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDDRV-VGASRIRDNQEVLVITENGF 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +        RGG G       P++G+   
Sbjct: 718 GKRTSATDYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           + L  +  +V A       ++LV++  G       ++     R GK      +   +  +
Sbjct: 689 VKLREDDRVVGASRIRDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKNG-Q 747

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  +V V G + + V+     ++  ++  I +  R   GV++                 E
Sbjct: 748 LAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPE 807

Query: 708 GLTW 711
             + 
Sbjct: 808 DSSI 811


>gi|194332984|ref|YP_002014844.1| DNA gyrase subunit A [Prosthecochloris aestuarii DSM 271]
 gi|194310802|gb|ACF45197.1| DNA gyrase, A subunit [Prosthecochloris aestuarii DSM 271]
          Length = 826

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 402/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + +  +S+   +   YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G  
Sbjct: 1   MQRDKILPISIEEEMRGAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG+IDGDS AA RY
Sbjct: 61  YKKSARIVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSIDGDSPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +L+ +D++ VDF   +++   EP V PS  PN+L NG SGIAVGMAT+I
Sbjct: 121 TEVRMKSIAGEMLKDLDKETVDFSLNFDDSLEEPRVLPSAMPNMLVNGASGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P  N+ E+    +A+I+NPEI++++++E+II PDFPTGG I+   E + ++YR GRG   
Sbjct: 181 PPQNLNEVVGGLIAMIENPEITVDEIMEHIIAPDFPTGG-IIYGYEGVKQAYRTGRGKVV 239

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  VE     G   IVVTE+PYQV K RLIEKI +L+  K+I  + DIRDES  D  
Sbjct: 240 IRARAVVEVTQKNGRESIVVTELPYQVNKVRLIEKIVDLVHQKKIEGIADIRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++  ++  + M+  F + +  L    VP+V+ +  +++ ++ HR E
Sbjct: 300 RLVIELKRDAVAKVVLNHLYKHTPMQDTFGVILLALVD-GVPKVLTIKEMMEAYILHRNE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           ++ RR+ + + A +++  IL+GL I   N+DE+I+ IR        +  ++ RF+LTE Q
Sbjct: 359 IVLRRTRYDLSAAEKKAHILEGLKICLDNLDEVISTIRQSPNASVAQERLMERFALTEVQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RL+ L  +E  +I ++    LA  E++  +L + ++Q   I  E+  VK +F 
Sbjct: 419 SKAILEMRLQRLTGMERSKIDNDYKETLAHIEELRFILANPERQMEIIKEELLRVKAVFG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVD 539
                  RRT              + MI +E + + +++ G+I+                
Sbjct: 479 DE-----RRTEIVPQEGE---FSIEDMIAQEDVVITVTHDGFIKRFPVSGYRRQARGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           ++    K  D ++    A T + IL  ++ G+ + L    +        G ++  +++L 
Sbjct: 531 VTGAQAKLDDFVEHMFIASTHNYILFFTSMGRCHWLKVYEIPEAGRTARGRSLANIMELQ 590

Query: 598 HNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I   +    +D    +++ +++G     E        R G   + +   +++    
Sbjct: 591 KGETIRAYINVKTFDDPLFIVMATARGLIKKTEIEAFSRPRRNGIAAISIEDGDELIEAR 650

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
              G+H  ++ +N    + F+   +  M R   GV+  +  D      +        + +
Sbjct: 651 LTDGEHDIIMAKNSGYAVRFAERDVRAMGRTAMGVKGITLDDDEYCISMVTSKRSDTSLL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +        L +RG  G +  K   + G  + 
Sbjct: 711 AVTDNGFGKRSLVDDYRLTRRGARGVITLKAHEKVGNLVG 750



 Score = 71.0 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 7/127 (5%)

Query: 594 IDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           I L+ ++  ++      S   LL V+  G        +     R  +  + + + EK+  
Sbjct: 688 ITLDDDEYCISMVTSKRSDTSLLAVTDNGFGKRSLVDDYRLTRRGARGVITLKAHEKVGN 747

Query: 653 VV----KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC-FKIC 706
           +V       GD + ++  N  +    +  I    R   GVRL     G            
Sbjct: 748 LVGLLDVNDGDDLIIITANGIVNRQHVSNIRLTGRNTSGVRLIRLMQGDKISATARVPKT 807

Query: 707 EGLTWID 713
           +    ID
Sbjct: 808 DDPDVID 814


>gi|329894505|ref|ZP_08270319.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088]
 gi|328923030|gb|EGG30355.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088]
          Length = 858

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/794 (32%), Positives = 404/794 (50%), Gaps = 64/794 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  A+
Sbjct: 4   LAKEIFPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMRKIAHAMLADLDKETVDFVDNYDGTEKIPAVLPTRIPNLLINGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A +AL++NPEI+I++L+E+I GPDFPTG II   R  I+++YR GRG   V
Sbjct: 184 PHNMTEVVSACMALLNNPEITIDELMEHIPGPDFPTGAIIS-GRAGILQAYRTGRGRIYV 242

Query: 253 RARWC-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA+   + +  +    I++ EIPYQ+ K+RLIE+IAEL+  K+I  + ++RDES +D   
Sbjct: 243 RAKAEVITDEAKNRDTIIIHEIPYQLNKARLIERIAELVKEKKIEGISELRDESDKDGLR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R    D+++ +++  + +++ F +NM  L     P+VM L  I+  +L HRREV
Sbjct: 303 VVIELKRGEMGDVVLNNLYAQTQLQSVFGINMVAL-ENGQPKVMNLKEIIDAFLRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-------------------- 411
           + RR+ + ++    R  +L+GL IA  NID II +I+N                      
Sbjct: 362 VTRRTIYLLRKARERGHLLEGLAIALANIDPIIELIKNSPSPADAREGLLAKVWSPGDVV 421

Query: 412 -----------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                +    + L+  Q  AIL LRL  L  LE  ++ +E    
Sbjct: 422 AMLEQAGEDACRPDGLEDHYGLHDGMYRLSPAQAQAILELRLHRLTGLEHEKLLNEYQEK 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L E      +L    +    I  E+ EV E F              E+  +      + +
Sbjct: 482 LKEIADYLHILGDSDRLKQVIREELEEVVEEFGDER--------LTEIVDSQHDLSVEDL 533

Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I  E   V IS+ G+         ++ +   +  SA   K+ D ++  L A T   IL  
Sbjct: 534 ITPEDRVVTISHGGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHSTILCF 593

Query: 567 STDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           +  GK Y L    +     +  G  +  L+ L+  + + +      Y     + + ++KG
Sbjct: 594 TNLGKVYWLKVYQIPVAGRQSRGRPMVNLLPLDPGERVTSILPVAEYTEDHYIFMATAKG 653

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
                  ++       G   L+++ ++ +       G+  V ++    K + F+   +  
Sbjct: 654 IVKKTALTDFSRPRSVGLRALELAEDDVLVGTAITHGESDVMLMSSAGKAVRFAEQDVRP 713

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           M R  +GVR     D      +     EG   + ++   Y +           RG  G +
Sbjct: 714 MGRTARGVRGIRMGDEDEMIALII-PQEGSYVLTASANGYGKKTMASEFPRKGRGTKGVI 772

Query: 740 VPKGFPRSGKFLSS 753
                 R+G  + +
Sbjct: 773 AMVTNDRNGPLVGA 786



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 82/227 (36%), Gaps = 11/227 (4%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             D G R T+   V+   +         K     ++         +  SV L AL   E 
Sbjct: 624 PLDPGERVTSILPVAEYTEDHYIFMATAKG----IVKKTALTDFSRPRSVGLRALELAED 679

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L      H    ++L+S+ GKA      ++         ++  I +    +++   + 
Sbjct: 680 DVLVGTAITHGESDVMLMSSAGKAVRFAEQDVRPMGRTARGVRG-IRMGDEDEMIALIIP 738

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVV 664
                +L  S+ G       SE     R  K  + + + ++   +   V+V   D + ++
Sbjct: 739 QEGSYVLTASANGYGKKTMASEFPRKGRGTKGVIAMVTNDRNGPLVGAVQVGEADELMLI 798

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEGL 709
                ++   + +I  + R  +GVR+   K+G  +  +   +  + L
Sbjct: 799 SNQGTMVRTRVSEISTLGRNTQGVRVIRLKEGEELVRITQIEESDEL 845


>gi|148998650|ref|ZP_01826089.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70]
 gi|149019212|ref|ZP_01834574.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|168493141|ref|ZP_02717284.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06]
 gi|168577201|ref|ZP_02723010.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016]
 gi|221231915|ref|YP_002511067.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|225854686|ref|YP_002736198.1| DNA gyrase subunit A [Streptococcus pneumoniae JJA]
 gi|307067869|ref|YP_003876835.1| type IIA topoisomerase subunit A [Streptococcus pneumoniae AP200]
 gi|4138535|emb|CAA06715.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916128|gb|AAZ92932.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916138|gb|AAZ92937.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916188|gb|AAZ92962.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916190|gb|AAZ92963.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916200|gb|AAZ92968.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916210|gb|AAZ92973.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147755487|gb|EDK62535.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70]
 gi|147931082|gb|EDK82061.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|183576584|gb|EDT97112.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06]
 gi|183577212|gb|EDT97740.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016]
 gi|220674375|emb|CAR68925.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|225723522|gb|ACO19375.1| DNA gyrase, A subunit [Streptococcus pneumoniae JJA]
 gi|301801924|emb|CBW34648.1| DNA gyrase subunit A [Streptococcus pneumoniae INV200]
 gi|306409406|gb|ADM84833.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus pneumoniae AP200]
 gi|332200667|gb|EGJ14739.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA41317]
          Length = 822

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|78355051|ref|YP_386500.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217456|gb|ABB36805.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 811

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/754 (34%), Positives = 398/754 (52%), Gaps = 28/754 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++   L++ YL Y+LS I  RAIPD+RDG KPVHRRI+ A  E+G  +  A KKSAR+
Sbjct: 4   QVTIEDELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNGYNRAPKKSARV 63

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+LVR+AQ F  R PL++GQGNFG+IDGDSAAA RYTE RM++
Sbjct: 64  VGDVIGKYHPHGDFAVYDALVRMAQDFSMRDPLVTGQGNFGSIDGDSAAAMRYTEVRMSR 123

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A   +  +D++ V+FR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 124 LASEFMADIDKETVEFRPNYDNTLQEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGE 183

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  +D+PE ++  L   + GPDFPTGG     R  + ++Y  GRG  ++R R  V
Sbjct: 184 LVDGLLLELDSPECTVADLAGLVKGPDFPTGGFCYAGR-GLRDAYETGRGTVKIRGRVEV 242

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE  +G   IV+ EIPY + KS L+EKIA L   +RI  + D+RDES      V+    R
Sbjct: 243 EERKKGFQSIVIREIPYALNKSSLVEKIAALANERRIEGITDLRDESDRRGIRVVIDLKR 302

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + +ET F +NM  +  G  PQ++ L  + + +L HRREV+ RR+ +
Sbjct: 303 GTIPEIVINQLYKYTPLETSFGINMLAVV-GNRPQLLTLKKVFECFLQHRREVIIRRTHY 361

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNLR 435
            ++  + R  IL+GL IA  NIDE++ +IR    P            L+E Q  AIL++R
Sbjct: 362 DLRKAEARAHILEGLRIALDNIDEVVELIRASKTPPEAKERLMQRFSLSEVQAQAILDMR 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  ++  E   LL + E   S+L + +     I  E++E+KE ++       R
Sbjct: 422 LQRLTNLEHEKLIEEYRELLKKIEYFKSILENEEVLRGVIRDELKELKETYATP-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKE 547
           RT   E          + +I  E + + +S RG+I+     S          ++ +H  +
Sbjct: 477 RTEMLEDELE--GIDIEDLIPDEDVVITLSRRGYIKRTPLDSYQQQRRGGKGIAGVHTGD 534

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
           GD ++  L       +LL +  G+ + L    +  G    +   I  L+ +  N+ + TA
Sbjct: 535 GDFVQDFLVTTNHQYLLLFTNKGRMFQLKVHQVPEGSRTAKGMHINNLLPMEENEWVNTA 594

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                +      L  + KG       S      R G   + +   +++ +V +V  +  V
Sbjct: 595 LTIREFTEEKYFLFSTRKGMVKRSSASLYAKARRTGLIAVGLREGDELIMVREVDDNCEV 654

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSY 719
            +  E    + F    +  M R   GV+  +  +D  +   +  +       +  +   Y
Sbjct: 655 VLTTEKGIAIRFGCGDVRPMGRSATGVKGIALSQDDSVVACVTVQGGLESEIMTVSRYGY 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +        +  RGG G +  K  P++G+ L +
Sbjct: 715 GKRTLIDRYRVQSRGGKGVINFKVTPKTGEVLGA 748



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 14/214 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
             E +      L      +E   +  + +G ++        K+    L A+  +EGD L 
Sbjct: 584 PMEENEWVNTALTIREFTEEKYFLFSTRKGMVKRSSASLYAKARRTGLIAVGLREGDELI 643

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-- 610
           +         ++L +  G A     G++         +   I L+ +  +V         
Sbjct: 644 MVREVDDNCEVVLTTEKGIAIRFGCGDVRPMGRSATGV-KGIALSQDDSVVACVTVQGGL 702

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGE 666
             +++ VS  G             +R GK  +       + E +  +  V+ D + ++  
Sbjct: 703 ESEIMTVSRYGYGKRTLIDRYRVQSRGGKGVINFKVTPKTGEVLGAMTVVSNDQLILLTS 762

Query: 667 NRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD 699
             K++   + ++  + R  +GVRL    +G    
Sbjct: 763 TNKIIRIGVKEVRSVGRATQGVRLVWLDEGDHVV 796


>gi|257783821|ref|YP_003179038.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469]
 gi|257472328|gb|ACV50447.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469]
          Length = 901

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 401/764 (52%), Gaps = 29/764 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + + +    +K   L   ++  +L Y++S I  RA+PD+RDG KPVHRRI++AMSE G+ 
Sbjct: 43  DLSDIHGGTLKPTDLSSEMKTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMSEAGIT 102

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                KKSA  VGEV+GK HPHGD ++YDS+VR++Q F  R PLI G GNFG+IDGD  A
Sbjct: 103 PNRPHKKSAWAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPA 162

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T+ A  +L  ++++ VD +  Y+E  +EP V P++FPNLL NG+SGIAVGM
Sbjct: 163 AMRYTEARLTRSAMEMLAELNKNTVDLQPNYDESLTEPAVLPARFPNLLVNGSSGIAVGM 222

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ +A   +IDNPE++ E+L+  + GPDFPTGG I+   + I ++Y  GR
Sbjct: 223 ATNIPPHNLGEVTDAVCMMIDNPEVTTEELMTVLPGPDFPTGG-IIMGTQGIKDAYETGR 281

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  VE+V  G   +VVTEIPYQV K  L EKIA+ +  K+I  + D+RDES  
Sbjct: 282 GSITVRAKVHVEQVKSGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNR 341

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++    R   P +++ +++  + +++ F +    L    VP+ + L  IL+ ++ H
Sbjct: 342 KGMRIVIDLKRDAVPQVVLNNLYKKTQLQSNFGIIDLALVD-GVPRTLSLREILRHYIDH 400

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLT 424
           + +V+ RR+ F +    +RV IL+GLL A  NIDEI+ IIR+          M  RF L 
Sbjct: 401 QIDVVRRRTEFDLDKAQKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKKRMNERFGLD 460

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AIL +RLR L  L    +  E+  L  +    + LL   ++    IA E+RE+  
Sbjct: 461 EIQGEAILQMRLRRLTGLARQDLVDEISQLRLDIAYYEDLLAHEEKILAVIADELREISN 520

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            ++      +RRT   E  +  +    + +I +E + V +++ G+++          K  
Sbjct: 521 RYAD-----KRRTQISE--QDIQNLDVEDLIAEEDMVVTVTHAGYVKRVPVEIYRSQKRG 573

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
              +  +  KE D ++    A T D +L  +  GK Y L    L  G    +   ++  +
Sbjct: 574 GKGVQGVSLKENDFVENLFVASTHDYVLFFTNLGKVYRLKVHELPVGSRTTKGSAIINVI 633

Query: 597 NHNQD------IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
               +      ++T   +     L+  + +G       SE     + G   + +   +++
Sbjct: 634 ETLAEGEKVKAVITTRDFPEDNYLMFATKQGMVKKTAMSEYDRTRKDGLIAINLKDGDEL 693

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
             V +V  GD V +   + K ++F   +   M RG  GVR  + K       +      G
Sbjct: 694 VNVRRVHPGDKVVLCSSDGKAILFDEAEARSMGRGTSGVRGITLKGNATMLGMEITNGNG 753

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             ++    + Y +        + KRGG G        + G  ++
Sbjct: 754 DLFV-ITEKGYGKRTAISEYPVHKRGGQGVFTITMTEKKGNLVA 796



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 8/194 (4%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           M   +   V  +        +     L A++ K+GD L      H  D+++L S+DGKA 
Sbjct: 658 MFATKQGMVKKTAMSEYDRTRKD--GLIAINLKDGDELVNVRRVHPGDKVVLCSSDGKAI 715

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                   S    G +    I L  N  ++   + +    L V++ KG       SE   
Sbjct: 716 LFDEAEARSMG-RGTSGVRGITLKGNATMLGMEITNGNGDLFVITEKGYGKRTAISEYPV 774

Query: 634 NTRKGKTFLKV---SSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           + R G+    +     +  +     V   H + ++ E   ++      I ++ R  +GV+
Sbjct: 775 HKRGGQGVFTITMTEKKGNLVACRVVGPQHEIMIMSEEGVVIRVKAGDISKLGRSTQGVK 834

Query: 689 LQSYKDGGISDVIC 702
           + +     +   + 
Sbjct: 835 VMNLSGSDVVSAVA 848


>gi|145636871|ref|ZP_01792536.1| DNA gyrase subunit A [Haemophilus influenzae PittHH]
 gi|145269952|gb|EDK09890.1| DNA gyrase subunit A [Haemophilus influenzae PittHH]
          Length = 880

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/816 (31%), Positives = 400/816 (49%), Gaps = 73/816 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPRLFNLKEIIEAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F           +         A   
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQED 535

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   KE D ++  L A+T D IL  S+ G+
Sbjct: 536 VVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGR 595

Query: 572 AYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +
Sbjct: 596 LYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKI 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +E       G   L +  E+++  V    G + + +     +++ F+ + +  M R  
Sbjct: 656 TLTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLA 715

Query: 685 KGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGR 717
            GVR                               D  I  V+   + +G    + +   
Sbjct: 716 TGVRGIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEGEILTATQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK +++
Sbjct: 776 GYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 7/125 (5%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V     ++L  +  G     + SE    +R  K  + +       K+    
Sbjct: 753 NIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 812

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI--CFKICEGLT 710
           +V   D + ++ +   L+   I ++  + R  +GVRL    D      +       E  +
Sbjct: 813 QVEETDQIMLITDAGTLVRTRISEVSIVGRNTQGVRLIRTADDEHVVSLERVCDADEEDS 872

Query: 711 WIDSA 715
             +  
Sbjct: 873 LEEIG 877


>gi|168491140|ref|ZP_02715283.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04]
 gi|73916126|gb|AAZ92931.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916144|gb|AAZ92940.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|183574384|gb|EDT94912.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04]
          Length = 822

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 VITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|73916170|gb|AAZ92953.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916206|gb|AAZ92971.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|301800141|emb|CBW32746.1| DNA gyrase subunit A [Streptococcus pneumoniae OXC141]
          Length = 822

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQT 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 VITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|95929990|ref|ZP_01312730.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684]
 gi|95133959|gb|EAT15618.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684]
          Length = 833

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/752 (32%), Positives = 393/752 (52%), Gaps = 14/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++N  +V++   + + Y+ YA+S I  RA+PD+RDG KPVHRR++ AM E+G ++   
Sbjct: 2   LSQQNKVSVNIENEMRKSYMDYAMSVIIGRALPDIRDGLKPVHRRVLFAMHELGNEYNKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  R PL+ GQGNFG+IDGDSAAA RY
Sbjct: 62  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQSFSMRNPLVDGQGNFGSIDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM +++  +L  ++++ VDF   Y++  SEP+V P KFPNLL NG+ GIAVGMAT I
Sbjct: 122 TEVRMAKLSHELLADIEKETVDFGPNYDDSLSEPIVLPCKFPNLLVNGSEGIAVGMATKI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    +++ID+P ++ E L++ I GPDFPT G I+   E + E+YR GRG  +
Sbjct: 182 PPHNLGEVINGLVSIIDDPTLTFEDLIQIIPGPDFPTAGFIL-GHEDVQEAYRTGRGIIQ 240

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RA+  VE +       IV+ EIPYQV K++LIEKIA LI  K+I  + D+RDES  D  
Sbjct: 241 MRAKAMVEIDRRTSRESIVINEIPYQVNKAKLIEKIANLIKEKKIEGISDLRDESDRDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++  ++ ++ M++ F + M  +  G  P+++ L  +L +++ HR+E
Sbjct: 301 RIVIDLKREAVAGVVLNQLYKMTAMQSSFGIIMLAIV-GGQPKILTLREVLDQFIDHRKE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE---IIAIIRNEDKPKPVMVSRFSLTENQ 427
           ++ RR  F ++  + R  IL+GL IA  N+DE   II    N  + K  ++ RF+ ++ Q
Sbjct: 360 IVTRRCVFELKKAEARAHILEGLKIALENLDELIQIIKTSANSQEAKARLIERFTFSDIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL  L  LE  +I +E + +LA+  ++  +L S  +    I  E+ EVKE + 
Sbjct: 420 AQAILDMRLHRLTGLERDKIINEYNEVLAQIARLKEILGSEVEILKIIRAELIEVKENYD 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                     T               +       +  +     RS +      + +  KE
Sbjct: 480 DPRRTEIIAKTKDLSIEDLIVEEDMVVTVSHSGYIKRNAVSLYRSQRRGGKGKTGMRPKE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D ++    A T   IL+ +  GK Y L    +        G+AI  L+ L   + ++T 
Sbjct: 540 EDFVEKLFIASTHSYILVFTDQGKVYWLKVHEIPQGGRAARGKAIVNLLQLAPEERVMTI 599

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                +     ++  +  G     E        + G   + +   + +       G   V
Sbjct: 600 LPVKEFVEDKYIIAATKNGVVKKTELMAYANPRQGGIISMTIDEGDSLVATRITDGSMDV 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSY 719
            +   + K + F+   +  M R  +GVR    + D  I  +         + +      Y
Sbjct: 660 LLASHHGKSIRFAETDVRPMGRTARGVRGMQLEGDDTIIGMEVVNDNTSASLVSVTENGY 719

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  N     +  R G G +  K   R+G  +
Sbjct: 720 GKRTNLSEYRVQSRSGKGIITIKTSDRNGYVV 751



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 70/196 (35%), Gaps = 8/196 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+     +         + ++   EGDSL        +  +LL S  GK+      ++  
Sbjct: 619 VVKKTELMAYANPRQGGIISMTIDEGDSLVATRITDGSMDVLLASHHGKSIRFAETDVRP 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                  ++ +  L  +  I+   V +      L+ V+  G       SE    +R GK 
Sbjct: 679 MGRTARGVRGM-QLEGDDTIIGMEVVNDNTSASLVSVTENGYGKRTNLSEYRVQSRSGKG 737

Query: 641 FLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            + + + ++   +  +  VT  + +  + +  K+L   +  +  + R  +GVRL   +D 
Sbjct: 738 IITIKTSDRNGYVVDIKLVTDEEDLMFITDRGKILRTRVGSLSIIGRNTQGVRLMVLEDD 797

Query: 696 GISDVICFKICEGLTW 711
                +     +    
Sbjct: 798 ERIVAVAKLAEKEEEL 813


>gi|163793045|ref|ZP_02187021.1| Type IIA topoisomerase, A subunit [alpha proteobacterium BAL199]
 gi|159181691|gb|EDP66203.1| Type IIA topoisomerase, A subunit [alpha proteobacterium BAL199]
          Length = 744

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/746 (53%), Positives = 537/746 (71%), Gaps = 4/746 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ ++      +    L  AL +RYLAYALSTI  R++PD+RDG KPVHRR++ AM ++ 
Sbjct: 1   MTTTSVEDPPPIHDTWLADALSQRYLAYALSTIMSRSLPDVRDGLKPVHRRLLFAMRQLR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD G+ FKKSAR+VG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+
Sbjct: 61  LDPGSGFKKSARVVGDVMGKFHPHGDSSIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T+VA L+L G+DED VDFR TY+ E  EPVV PS FPNLLANG  GIAV
Sbjct: 121 AAAMRYTEARLTEVAALLLDGIDEDTVDFRQTYDGEGEEPVVLPSAFPNLLANGAQGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HNV E+C A   LI +PE   E L+E + GPD PTGG++VE+RES++E+YR 
Sbjct: 181 GMATSIPPHNVDELCTALQHLIKHPEARDETLVEMVPGPDLPTGGVLVEARESVLEAYRT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FRVRA+W VE +  G+W IVVTEIPYQVQKSRL+E++AEL+  +++ LL+DIRDES
Sbjct: 241 GRGSFRVRAKWEVEPLKNGTWQIVVTEIPYQVQKSRLVERMAELLQNRKLTLLDDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           A D+R+VL PK+R++DPD+LMES+F  +D+E+R  LN+NVL    VP+VM L   L+ +L
Sbjct: 301 AMDIRLVLEPKSRNVDPDVLMESLFRQTDLESRISLNLNVLDKDNVPRVMSLREALQAFL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HR++VL RR+  R++ I  R+E+L G LIAYLN+DEII I+R ED+PK VM+  F L++
Sbjct: 361 DHRQDVLVRRTRHRLEKIAHRLEVLGGYLIAYLNLDEIIRIVREEDEPKAVMMRTFELSD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLR+LR+LEE +I+ E +NL AE++ + +LLN   +QW  ++ ++ E++  
Sbjct: 421 VQAEAILNMRLRALRRLEEIEIRKEFENLSAERDDLTALLNDDARQWRAVSDQLGEIRRG 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F K+T++GRRRT              +A++E+EPITV+ S +GWIR+LK H      + +
Sbjct: 481 FGKTTEIGRRRTVIGSTPN-PVVVPTEALVEREPITVICSEKGWIRALKGHIGLDQEVKY 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           KEGD  +  LHA TTD+IL+ +TDG+ YT+    L SGRGHGE ++L+IDL +++D+V  
Sbjct: 540 KEGDGERFRLHAETTDKILVFATDGRFYTIGGDKLPSGRGHGEPLRLMIDLANDEDVVAI 599

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
             Y +  +LLV SS+G  F+V   +++A TR GK  L V S  +  + V V GD VAVVG
Sbjct: 600 RPYRTGDRLLVASSEGRGFVVPVDDVVAQTRAGKQVLVVDSGARANICVTVAGDTVAVVG 659

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSEN 724
            NRKLL+F    IPEM RGKGV LQ YK GG ++D + FK  +GL+W+   GR   R+E 
Sbjct: 660 TNRKLLVFDAADIPEMVRGKGVILQKYKPGGHLADAVVFKAEDGLSWVLQGGR--RRTEP 717

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DL  W GKR G G   P GFPR  +F
Sbjct: 718 DLGVWRGKRAGAGKNPPTGFPRPPRF 743


>gi|307704847|ref|ZP_07641740.1| DNA gyrase, A subunit [Streptococcus mitis SK597]
 gi|307621597|gb|EFO00641.1| DNA gyrase, A subunit [Streptococcus mitis SK597]
          Length = 822

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 400/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----KRRTEL--MVGEVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASV-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSG 750


>gi|145630895|ref|ZP_01786672.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|144983555|gb|EDJ91023.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
          Length = 880

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/816 (31%), Positives = 400/816 (49%), Gaps = 73/816 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSW 415

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F           +         A   
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQED 535

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   KE D ++  L A+T D IL  S+ G+
Sbjct: 536 VVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGR 595

Query: 572 AYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +
Sbjct: 596 LYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKI 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +E       G   L +  E+++  V    G + + +     +++ F+ + +  M R  
Sbjct: 656 ALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENAVRAMGRLA 715

Query: 685 KGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGR 717
            GVR                               D  I  V+   + +G    + +   
Sbjct: 716 TGVRGIKLALTNDISDDESAVEIEDISDDNAEALLDLNIDKVVSLVVPKGEGEILTATQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK +++
Sbjct: 776 GYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V     ++L  +  G     + SE    +R  K  + +       K+    
Sbjct: 753 NIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 812

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V   D + ++ +   L+   + ++  + R  +GVRL    D      +
Sbjct: 813 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSL 861


>gi|73916182|gb|AAZ92959.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           +++I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DENIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|166362461|gb|ABY87166.1| DNA gyrase A [Xanthomonas albilineans]
          Length = 935

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/856 (30%), Positives = 393/856 (45%), Gaps = 117/856 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G      +
Sbjct: 4   SAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGDSAAA RYT
Sbjct: 64  YKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++   ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP
Sbjct: 124 EARMSRLTHELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALIDNP+I ++ L+EYI GPDFPT G IV     I+  YR GRG  R+
Sbjct: 184 PHNLTESINACIALIDNPQIDVDGLMEYIPGPDFPTAG-IVNGTAGIIAGYRTGRGRVRM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR  +E    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +
Sbjct: 243 RARAEIEIQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    D+++ +++  + ME+ F +NM  L     PQ++ L  +L+ ++ HRREV+
Sbjct: 303 YIEVKRGEAADVVLNNLYQQTQMESVFGINMVALVD-GRPQLLNLKQLLEAFVRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ F ++    R  IL+GL +A  NIDE+I +I+    P                   
Sbjct: 362 TRRTIFELRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGA 421

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + LTE Q   IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLSAAGAEASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
                +  +L +       I  E+  ++E +  +     R +          A     + 
Sbjct: 482 EAISGLIRILENPDVLLEVIREELVSIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ +      SA   KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
           P   L        G  +   I L   + +        Y     +   + KG       SE
Sbjct: 602 PVYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVREYADGHYVFFATRKGMVKKTPLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSI-------------- 675
                ++GK  + +   + +  V    G+  V +   N K + FS               
Sbjct: 662 FAYQLKRGKVAINLDEGDALVDVALTDGERDVLLFASNGKTVRFSERPKDEEADEVAVDE 721

Query: 676 ------------------DQ-----------IPEMSR-GKGVRLQSY-KDGGISDVICFK 704
                             D+           +    R  +GVR     K   +  +I  +
Sbjct: 722 AAADDALAADDEATGEDGDETRGARRKSRGGVKPTGRSSRGVRGIRLAKSEYVVSLIVAE 781

Query: 705 ICEG---------------------------LTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             EG                              + +    Y +           RG  G
Sbjct: 782 PAEGQDEDADDADLAQEAEADAQTRTADDADAYILTATENGYGKRTPLGEYPRKGRGTQG 841

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK + +
Sbjct: 842 VIGIQTSERNGKLVGA 857



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKMKLVVKVT-GDHVAVV 664
           D+   +L  +  G        E     R   G   ++ S    K+   V ++  D V ++
Sbjct: 810 DADAYILTATENGYGKRTPLGEYPRKGRGTQGVIGIQTSERNGKLVGAVLLSVKDEVLLI 869

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            +   L+     +I  + R  +GV L     G     +
Sbjct: 870 SDGGTLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAV 907


>gi|302340766|ref|YP_003805972.1| DNA gyrase subunit alpha [Spirochaeta smaragdinae DSM 11293]
 gi|301637951|gb|ADK83378.1| DNA gyrase, A subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 818

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/753 (33%), Positives = 401/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
             ++  V  +S+   +   YL YA+S I  RA+PD+RDG KPVHRRI+++M+EMGL    
Sbjct: 2   EEIKGQVIPISIEEEVRGSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMNEMGLRSDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           AFKK  RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP++  QGNFG++DGD  AA R
Sbjct: 62  AFKKCGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSMRYPVVRPQGNFGSVDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M +VAE +L+ + ++ VD+   Y++   EP+V P  FP LL NG SGIAVGMAT+
Sbjct: 122 YTEAKMDRVAEEMLKDIKKETVDYGPNYDDSMQEPLVLPGAFPYLLTNGASGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +  HN++E+C A +A I++  ISI+ L++YI GPDFPTGG I+  R  I +++R G+G  
Sbjct: 182 MAPHNLREVCAAIVAYINDANISIDDLMKYIKGPDFPTGG-IIFGRRGIKQAFRTGKGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR+++ +E    G   I+VTEIPY V K+ LI KIA+L+  KRI  + D+RDES  D  
Sbjct: 241 TVRSKFVIETTKSGKDRIIVTEIPYAVNKANLIVKIADLVKEKRIDGISDLRDESDRDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++  +F  + ++  F +    L    +P+ + L  ++  ++ HR E
Sbjct: 301 RIVIELKRGTVPKVVLNQLFSHTALQQNFNVTNLALVD-GMPKQLNLKELVHYFVRHRVE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQ 427
           V+ RR+ + ++  + R  IL+GL IA  NIDE++ II++ +        ++ RF L+E Q
Sbjct: 360 VVTRRTRYDLKKAEERAHILEGLKIALDNIDEVVQIIKSSNDVNQARERLMERFKLSERQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ EL  +LA    +  LL+S ++    +  E  E+ + + 
Sbjct: 420 SQAILDMRLQKLTSLETKKIEEELREVLALIAYLKDLLSSEQKILGVVRDETEEIAQKYG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-SVDLSALHFK 546
                        E++  D    +  ++       +          +       S+    
Sbjct: 480 DDRKTEIVADEVEEINIEDLIQKEDMVVLVSNKGFIKRVPVSSYRNQGRGGKGSSSAKLI 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
             D +K    A T D IL ++ +GKAY +    +        G  I+ L++++ N+DI T
Sbjct: 540 NEDFIKHLFIASTHDYILFVTNEGKAYWMKVHEIPEGSRASRGTHIKALLEISANEDITT 599

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                 +     L + +++G    V+ S+      +G   +K+ + + +   V   GD  
Sbjct: 600 IVSLQEFSEEHYLFMATARGIVKKVKTSDFRNARTRGIIAIKLDNGDTLITAVLTRGDSE 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V  N   L F  DQ+  M R  +GV     +          ++ +    +  +    
Sbjct: 660 IVIVSRNGNALRFHEDQVRAMGRASRGVTGIRLQSDDEL-AGILRVEDNEKMLLLSENGL 718

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +        L  RG  G +  K   RSG+ + 
Sbjct: 719 GKRVEYDHFSLHGRGTRGQIAYKTSERSGEIVG 751



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KM 650
           I L  + ++      +   K+L++S  G    VE      + R  +G+   K S    ++
Sbjct: 690 IRLQSDDELAGILRVEDNEKMLLLSENGLGKRVEYDHFSLHGRGTRGQIAYKTSERSGEI 749

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL--QSYKDGGISDVICFKIC 706
             V+ V   D +  +      +   +  +P   +  +GV +   +  D  +         
Sbjct: 750 VGVLSVLEEDDLVCITSQGNTIKLHVSDVPVQGKTAQGVNIVTITAPDVVVDVARVMNDK 809

Query: 707 EGLT 710
           +   
Sbjct: 810 DEEE 813


>gi|73916136|gb|AAZ92936.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQVLSLEDEDLIEELDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEHGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDSSDDAYLFFTTRHGIVKRTSIKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|91977126|ref|YP_569785.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB5]
 gi|91683582|gb|ABE39884.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB5]
          Length = 753

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/737 (56%), Positives = 548/737 (74%), Gaps = 2/737 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKS
Sbjct: 12  EIHDVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEAR
Sbjct: 72  AKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L G+DED V FR  Y+ +  EP+V P  FPNLLANG  GIAVGMAT+IP HN
Sbjct: 132 MTDVARLLLDGIDEDGVAFRPNYDGQSKEPMVLPGGFPNLLANGAQGIAVGMATAIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LI+ P+   + LL ++ GPDFPTGGI+++S+ESI E+Y  GRG FR RA+
Sbjct: 192 AAELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIVIDSKESIAEAYTTGRGAFRTRAK 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE  RG+W +VVTEIP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVR+V+ P
Sbjct: 252 WAQEEGARGTWVVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRVVIEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++DP+L+MES+F L+++E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL RR
Sbjct: 312 KSRTVDPELMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S++R   I+ R+E+L G LIAYLNID++I IIRNED+PKPV++  FSLT+ Q +AILN+R
Sbjct: 372 SNYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRNEDEPKPVLMKTFSLTDIQAEAILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE++I++E  NL AE + I+++L S  +QW ++  ++R+V+E+F   T LG+R
Sbjct: 432 LRSLRKLEEFEIRTEDKNLRAELKGINAILKSETEQWAKVGEQVRKVREMFGPKTPLGKR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L+FK+ D L  + 
Sbjct: 492 RTQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDRLGQSF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A TT ++LLL+T+G+ Y+L    L  GRGHGE I++ ID+  +  IV  FVY    K L
Sbjct: 552 FAETTSKLLLLATNGRFYSLDVAKLPGGRGHGEPIRMFIDMEQDAAIVAVFVYKGGRKFL 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  FIV E + +  TRKGK  + V   +E +   VV    D VAV+GENRK+LIF
Sbjct: 612 IASHDGQGFIVGEDDCVGTTRKGKQIINVDMPNEARALTVVGEGSDSVAVIGENRKMLIF 671

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            +DQ+PEM+RG+GVRLQ YKDGG+SD+  F   +GL+W DSAGR ++ +  DL  W G R
Sbjct: 672 PMDQVPEMTRGRGVRLQKYKDGGLSDIATFVSKQGLSWRDSAGREFSATMKDLAEWRGNR 731

Query: 734 GGVGSLVPKGFPRSGKF 750
              G L PKGFP+S KF
Sbjct: 732 ADAGRLPPKGFPKSNKF 748


>gi|86130322|ref|ZP_01048922.1| DNA gyrase subunit A [Dokdonia donghaensis MED134]
 gi|85818997|gb|EAQ40156.1| DNA gyrase subunit A [Dokdonia donghaensis MED134]
          Length = 848

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/754 (30%), Positives = 400/754 (53%), Gaps = 19/754 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +++D VD +  +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEDMLADIEKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   A IDN +++I++L+E++  PDFPTGG I    + + E+++ GRG   +RA
Sbjct: 185 NLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIY-GYDGVREAFKTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV  G  CI+VTEIPYQV K+ +I+K A++I  K+I  +  IRDES  +   +++
Sbjct: 244 KAEFEEVK-GRECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  +F  + +++ F +N   L     P+++ L  ++  ++ HR EV+ R
Sbjct: 303 VIKRDAVPNIVLNKLFKYTALQSSFSVNNIALV-NGRPEMLNLKDMIHHFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IAIIR          +   RF L+E Q  AI
Sbjct: 362 RTEFELKKAEARAHILEGLIIASDNIDEVIAIIRASANGDEARQNLIERFKLSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++SE + ++   E +  +L   +++ + I  E++E+K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDILAKKERRMSIIREELQEIKDKYGDERR 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                              +  +       +  ++    ++     V   A   +  D L
Sbjct: 482 SIIEYAGGDVSITDLIPDKKVVITISNAGYIKRTSLTEYKTQNRGGVGTKASTTRNEDFL 541

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV-- 607
           +          +L  +  GK + +    +  G    +  AIQ LI++  + ++       
Sbjct: 542 EHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTSKGRAIQNLINIEQDDEVKAFVCTG 601

Query: 608 ------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                 Y +   +++ + KG        +       G   + +   +++      TG+  
Sbjct: 602 DLKDEDYINNHYIIMATKKGQVKKTALEQYSRPRTNGINAITIKDNDELLSAKLTTGESQ 661

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRS 718
           V +  ++ K + F   +   M R   GVR  +  +     V    + +  +  +  + + 
Sbjct: 662 VMLALKSGKAIRFEESKTRPMGRNASGVRGITLANDEDEVVGMVSVNDTESNILVVSEKG 721

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +     +  RGG G        ++G+ +S
Sbjct: 722 YGKRSSLEDYRITNRGGKGVKTISVTEKTGELVS 755



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 75/208 (36%), Gaps = 8/208 (3%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           ++   D       ++  +   V  +        +++   ++A+  K+ D L  A      
Sbjct: 602 DLKDEDYINNHYIIMATKKGQVKKTALEQYSRPRTN--GINAITIKDNDELLSAKLTTGE 659

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSS 619
            +++L    GKA             +   ++ +   N   ++V     +     +LVVS 
Sbjct: 660 SQVMLALKSGKAIRFEESKTRPMGRNASGVRGITLANDEDEVVGMVSVNDTESNILVVSE 719

Query: 620 KGNAFIVEESEIIANTRKGKTF--LKVSSE-EKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
           KG        +     R GK    + V+ +  ++  +  VT  D + ++ ++   +   +
Sbjct: 720 KGYGKRSSLEDYRITNRGGKGVKTISVTEKTGELVSIKNVTDADDLMIINKSGIAIRMEV 779

Query: 676 DQIPEMSRG-KGVRLQSYKDGGISDVIC 702
             +  M R  +GVRL + K       + 
Sbjct: 780 ASLRVMGRATQGVRLINLKGNDSIAAVA 807


>gi|332529392|ref|ZP_08405353.1| DNA gyrase subunit A [Hylemonella gracilis ATCC 19624]
 gi|332041190|gb|EGI77555.1| DNA gyrase subunit A [Hylemonella gracilis ATCC 19624]
          Length = 890

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/818 (30%), Positives = 390/818 (47%), Gaps = 81/818 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDGFKPVHRR++ AM E+  D+  
Sbjct: 2   TEFAKETLPISLEEEMRRSYLDYAMSVIIGRALPDARDGFKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGDQSVYD++VR+AQ F  R+ L+ GQGNFG++DGD AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDPAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A   L  +D++ VDF   Y+  + EP+V P++ PNLL NG+ GIAVGMAT+
Sbjct: 122 YTEIRLAKIAHEALADIDKETVDFGPNYDGSEKEPLVLPTRVPNLLVNGSGGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L ++ NP  SI++L+E I  PDFPT G I+   + + + YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHVLKNPGASIDELMEIIPAPDFPTAG-IIYGMQGVKDGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   E++ +G    I+V E+PYQV K  L+E+IAEL+  K+I  +  I+DES +  
Sbjct: 241 VMRARCHFEDIDKGQRQSIIVDELPYQVNKKSLLERIAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  L  G  P++  L  ++  +L HRR
Sbjct: 301 MRVVIELKRGELPEVVLNNLYKQTQLQDTFGMNMVALV-GGQPKLCNLKDLIVVFLDHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------------ 411
           EV+ RR+ F ++    R  +L+GL +A  NIDE I IIR                     
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRAWDSKL 419

Query: 412 ---------------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                      +        + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRSRADGGVINADDYRPEGLEREFGMQNDGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  +++AE E +  +L   ++    +  E+  +K+ F ++    RR         
Sbjct: 480 DKIVAEYKDVMAEIENLLDILARPERVAAIVGEELAGIKQEFGQTKLGARRSVVE----H 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
             +    + +I  E   V +S+ G+         R+ K       A   KE D +     
Sbjct: 536 NAQDLATEDLIAPEDKVVTLSHAGYIKSQPLSEYRAQKRGGRGKQATQTKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    +        G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPEGSRNSRGRPIVNMFPLAEGEKITVVLPLTGEFSS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           + S   + + +  G        E     + G   + + + + +       G   V +  +
Sbjct: 656 FPSDHYVFMATRMGTVKKTSLDEFNNPRKAGIIAVDLDAGDFLIGAALTDGRHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL----------TWIDSA 715
             K + F  + +  M R  +GVR     DG     +     E            + + + 
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMMLDDGQSVIAMLVAQDETQNDVNGEAARTSVLTAT 775

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              Y +           RG  G +  +   R+GK +++
Sbjct: 776 ENGYGKRTPIAEYTRHGRGTKGMIAIQQSERNGKVVAA 813



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 83/273 (30%), Gaps = 26/273 (9%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G + T 
Sbjct: 595 IANTHDYILCFSNRGRLYWLKVWEVPEGSRNSRGRPIVNMF---------PLAEGEKITV 645

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++    +      +        +               + A+    GD L  A    
Sbjct: 646 VLPLTGEFSSFPSDHYVFMATRMGTVKKTSLDEFNNPRKAGIIAVDLDAGDFLIGAALTD 705

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK----- 613
               ++L S  GKA      ++     +   ++ ++ L+  Q ++   V     +     
Sbjct: 706 GRHDVMLFSDGGKAVRFDENDVRPMGRNARGVRGMM-LDDGQSVIAMLVAQDETQNDVNG 764

Query: 614 ------LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKV-TGDHVAV 663
                 +L  +  G       +E   + R  KG   ++ S    K+     V T D + +
Sbjct: 765 EAARTSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQQSERNGKVVAATLVHTDDEIML 824

Query: 664 VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           + +   L+   + +I EM R  +GV L +  DG
Sbjct: 825 ITDKGVLVRTRVSEIREMGRATQGVTLIALDDG 857



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G     P           + +  +     N  +V A +  +  ++++++ KG     
Sbjct: 775 TENGYGKRTPIAEYTRHGRGTKGMIAIQQSERNGKVVAATLVHTDDEIMLITDKGVLVRT 834

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
             SEI    R   G T + +    ++  + ++  + 
Sbjct: 835 RVSEIREMGRATQGVTLIALDDGTQLSGLQRIVEND 870


>gi|325577977|ref|ZP_08148171.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160210|gb|EGC72338.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 881

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/816 (31%), Positives = 401/816 (49%), Gaps = 73/816 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   +  ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M + G
Sbjct: 1   MTDS---IHSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +  G  + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  ITAGKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+VTE+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNIIDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDH-GQPRLFNLKQIIEAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+I IIR   + K           
Sbjct: 356 MHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEVIDIIRQSKERKEAAEKLISRPW 415

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +  S + L+  QVDAIL LRL  L  L   ++ +E 
Sbjct: 416 KLNNEILGLLDAAARPAELAAEFGIKGSDYYLSPEQVDAILELRLHRLTGLATEEVINEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             LL +  ++  ++NS ++    I  E+ +V+  F+          +         A   
Sbjct: 476 KELLVKIAELLHIINSPERLMEVIREELEQVRAQFADERRTEITAASGDIDLEDLIAQED 535

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   K+ D ++  L A+T D IL  S+ G+
Sbjct: 536 VVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSRGR 595

Query: 572 AYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +
Sbjct: 596 LYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEEDKFVIMATAGGIVKKI 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +E       G   L +  E+++  V    G + + +     +++ F+   +  M R  
Sbjct: 656 ALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESAVRAMGRLA 715

Query: 685 KGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGR 717
            GVR                               D  I  V+   + +     + +   
Sbjct: 716 TGVRGIKLALTNDIADDESAVEIEEVSDDNAEETLDLNIDKVVSLVVPKNDGAILTATQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK +++
Sbjct: 776 GYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 10/129 (7%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V  +   +L  +  G     + SE    +R  K  + +       K+    
Sbjct: 753 NIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 812

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI-----CFKICE 707
           +V   D + ++ +   L+   + ++  + R  +GVRL    +      +          E
Sbjct: 813 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHVVSLERVCDVDDEDE 872

Query: 708 GLTWIDSAG 716
           G   + S  
Sbjct: 873 GSEDVTSEE 881


>gi|110598903|ref|ZP_01387151.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031]
 gi|110339480|gb|EAT58007.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031]
          Length = 828

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 396/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E +  +S+   +   YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G  
Sbjct: 1   MQRERILPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARIVGEV+GK HPHGD +VYDSLVRL Q F  RYPLI GQGNFG++DGDS AA RY
Sbjct: 61  HKKSARIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSVDGDSPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +L+ +D+  VDF   +++   EP V PS  PNLLANG+SGIAVGMAT+I
Sbjct: 121 TEVRMKAIAGEMLKDLDKGTVDFALNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P  N++EI +  +ALI NPE+ +  L++++I PDFPTGG I+   E +  +Y  GRG   
Sbjct: 181 PPQNLREIVDGMIALIANPELEVADLMKFVIAPDFPTGG-IIYGYEGVRNAYMTGRGKVV 239

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  VE     G   I+VTE+PYQV K RLIEKI EL+  K++  + DIRDES  D  
Sbjct: 240 IRARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  + M+  F + M  L    VP+V+ L  ++  ++ HR E
Sbjct: 300 RLVIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVD-GVPRVLNLKEMMIYYIKHRNE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           ++ RR+ F +   ++R  IL+GL I   N+DE+I  IR        +  ++ RF L+E Q
Sbjct: 359 IVLRRTKFDLDTAEKRAHILEGLKICLDNLDEVITTIRQSPDANTAQEKLMERFGLSELQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RL+ L  +E  +I  E    LA  E +  +L+S ++Q   I  E+ +V+E++ 
Sbjct: 419 SKAILEMRLQRLTGMERKKIDMEYTETLALIEALKFILSSPEKQMEIIREELLKVREVYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
            +     RRT              + MI +E + + I++ G+I+                
Sbjct: 479 DA-----RRTEIVPQEGD---FSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGQG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           ++    K  D ++    A T + IL  +  G+ Y L    +        G A+  +++L 
Sbjct: 531 VTGAQAKHDDFIEHMFIASTHNYILFFTNRGRCYWLKVYEIPEAGRAARGRALANIMELQ 590

Query: 598 HNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I   +    +D    +++ ++ G        +     R G   + +   +++    
Sbjct: 591 PGEKIRAYINIRNFDEPGFIVMATTNGIVKKTPLDDFSHPRRNGLAAITIEEHDELLDAR 650

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
              G+H + +   +  ++ F+  +I  M R   GV+  +  +G     +          +
Sbjct: 651 LTDGEHQIILAKSSGFVVRFAEAEIRSMGRTAMGVKGITLDEGEKCISMVTTKRFDTALL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +        L +RG  G +  K   + G  + 
Sbjct: 711 AVTDNGFGKRSRVEDYRLTRRGARGVITLKAHEKIGALVG 750



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 6/123 (4%)

Query: 594 IDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           I L+  +  ++          LL V+  G        +     R  +  + + + EK+  
Sbjct: 688 ITLDEGEKCISMVTTKRFDTALLAVTDNGFGKRSRVEDYRLTRRGARGVITLKAHEKIGA 747

Query: 653 VV----KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +V        D + ++  +  +    +  I    R   GVRL     G +   +      
Sbjct: 748 LVGLLDVNDDDDLIIITTHGIVNRQHVSDIRLTGRNTSGVRLIRLMAGDVISALARVPKS 807

Query: 708 GLT 710
              
Sbjct: 808 DDE 810


>gi|83593183|ref|YP_426935.1| DNA topoisomerase IV subunit A [Rhodospirillum rubrum ATCC 11170]
 gi|83576097|gb|ABC22648.1| DNA topoisomerase IV subunit A [Rhodospirillum rubrum ATCC 11170]
          Length = 743

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/745 (53%), Positives = 537/745 (72%), Gaps = 4/745 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S         ++   L  AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM  + 
Sbjct: 1   MSKGPVPEPLEIRETPLSEALSERYLAYALSTIVSRSLPDVRDGLKPVHRRLLYAMRMLK 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD G+ FKK AR+VG+VIGK HPHGD +VY+++VRLAQ F  RYPL+ GQGNFGNIDGD+
Sbjct: 61  LDPGSGFKKCARVVGDVIGKYHPHGDAAVYEAMVRLAQEFAVRYPLVEGQGNFGNIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T VA  +++G+D+DAVDFR TY+ ED EPVV P+ FPNLLANG+SGIAV
Sbjct: 121 AAAMRYTEARLTAVASALMEGLDDDAVDFRPTYDGEDHEPVVMPAAFPNLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HNV E+CEA L LI  P    E LL ++ GPDFPTGG++ E  ++I E+YR 
Sbjct: 181 GMATNIPPHNVGELCEALLHLIKVPACPPEALLSFVKGPDFPTGGVLAEHPQAIAEAYRT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  R+RARW  E +  G + IV+TEIPYQ+QK++L+E+IAELI  +++P+L D+RDES
Sbjct: 241 GRGAMRLRARWEKENLSHGLYQIVITEIPYQIQKAKLVERIAELINGRKLPILADVRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           A+D+R+VL P+NR++D + LME +F L+D+E RF LNMNVL    VP+V+ L   L  +L
Sbjct: 301 ADDLRLVLEPRNRTVDAETLMEQLFRLTDLEIRFNLNMNVLDGDGVPKVLGLKEALVAFL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HR  VL RRS  R+  I+ R+E+L G LIAYLN+DE+I IIR ED+PKP +++ F L++
Sbjct: 361 DHRLVVLGRRSRHRLGKIEHRLEVLAGTLIAYLNLDEVIRIIREEDEPKPALMAAFGLSD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLR+LEE +I+ E D L AEK  +++LL      W  IA +IRE ++ 
Sbjct: 421 VQTEAILNMRLRSLRRLEEMEIRREHDALSAEKAGLEALLADEGLCWKVIAKQIRETRKT 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F   T LGRRRT       A      +A++E+EPITV++S RGW+R++K H        F
Sbjct: 481 FGGDTALGRRRTELGSAPTA-VIVPIEALVEREPITVLLSERGWLRAVKGHQEPGEENKF 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           KEGD+L +ALHA TTD++L+L + G+ +TLPA  L  GRG GE ++L++DL ++ DIV+ 
Sbjct: 540 KEGDALLLALHAQTTDKLLILDSTGRFFTLPADKLARGRGFGEPVRLMLDLPNDADIVSL 599

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
            V+D   +L++ +S G  F+VEE +++A TR GK  + V + E+  L  +V GDHVAV+G
Sbjct: 600 LVHDPARRLILAASGGRGFVVEEKDVLAQTRAGKQVMTVDAGERALLCREVRGDHVAVIG 659

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +NRKLL+F + Q+P ++RGKGV LQ YKDGGI+D+  F I +GLTW  S  R   R+E+D
Sbjct: 660 QNRKLLVFPLTQVPVLARGKGVILQRYKDGGIADIKTFAIADGLTWK-SGER--TRTESD 716

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  WLG R G+G L P+GFPR+  F
Sbjct: 717 LTAWLGDRAGLGRLPPQGFPRTNSF 741


>gi|254707020|ref|ZP_05168848.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|254709871|ref|ZP_05171682.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|256031363|ref|ZP_05444977.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
 gi|261314487|ref|ZP_05953684.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|261317413|ref|ZP_05956610.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|265988450|ref|ZP_06101007.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
 gi|261296636|gb|EEY00133.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|261303513|gb|EEY07010.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|264660647|gb|EEZ30908.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
          Length = 770

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/759 (59%), Positives = 587/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLA  F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLALDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 731

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|331266217|ref|YP_004325847.1| DNA gyrase, subunit A [Streptococcus oralis Uo5]
 gi|326682889|emb|CBZ00506.1| DNA gyrase, subunit A [Streptococcus oralis Uo5]
          Length = 822

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 396/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +         + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----KRRTEL--MIGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRYGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GVR  + ++G         I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYSVRFNQSAVRGMSRIATGVRGVNLREGDTVVGASV-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKNGPLAG 750


>gi|194335275|ref|YP_002017069.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307752|gb|ACF42452.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1]
          Length = 827

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/752 (32%), Positives = 381/752 (50%), Gaps = 13/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E +  +S+   +   YL Y++S I  RA+PD+RDG KPVHRR++  M E+GL  G  
Sbjct: 1   MQRERIVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSAR+VGEV+GK HPHGD +VYDSLVRL Q F  RYPLI GQGNFG++DGDS AA RY
Sbjct: 61  HKKSARVVGEVLGKFHPHGDTAVYDSLVRLVQEFSMRYPLIDGQGNFGSVDGDSPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +L+ +D+  VDF   +++   EP V PS  PNLLANG+SGIAVGMAT+I
Sbjct: 121 TEVRMKSIAGEMLKDLDKATVDFSLNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P  N++E+ +  +ALI NPE+ +  L++Y+I PDFPTGG I+   E +  +Y  GRG   
Sbjct: 181 PPQNLREVVDGMIALIANPELEVADLMKYVIAPDFPTGG-IIYGYEGVRSAYMTGRGKVV 239

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  VE         IVVTE+PYQV K RLIEKI EL+  K+I  + DIRDES  D  
Sbjct: 240 IRARAIVEITPKNSRESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  + M+  F + M  L    VP+++ L  ++  ++ HR E
Sbjct: 300 RLVIELKRDAVAMVVLNNLYKHTPMQDTFGVIMLALVD-GVPRILNLKEMMVYYIKHRNE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           ++ RR+ F +   ++R  IL+GL I   N+DE+I+ IR        +  ++ RF L+E Q
Sbjct: 359 IVLRRTQFDLATAEKRAHILEGLKICLDNLDEVISTIRESPDASTAQERLIERFGLSELQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RL+ L  +E  +I  E   +LA  E++  +L S ++Q   I  E+ +V+E++ 
Sbjct: 419 SKAILEMRLQRLTGMERKKIDLEYTEVLAFIEELRFILGSPEKQMQIIREELLKVREVYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                               A     +       +        R        ++    K 
Sbjct: 479 DERRTEIVPQEGDFSIEDMIAQEDVVITITHEGFIKRFPVSGYRRQARGGKGVTGAQAKH 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDI--- 602
            D ++    A T + IL  +  G+ + L    +        G A+  +++L   + I   
Sbjct: 539 DDFVEHMFIASTHNYILFFTNRGRCHWLKVYEIPEAGRAARGRALANIMELQQGEKIRAY 598

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-V 661
           +    +D    +++ ++ G        +     + G   + +   +++       GDH +
Sbjct: 599 INIRNFDEPGFIVMATTNGIVKKTPLEDFSHPRKNGIAAITIDEHDELLDARLTDGDHQI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +   +  ++ F   +I  M R   GV+  +  +G     +          +      + 
Sbjct: 659 ILAKNSGFVVRFPEAEIRSMGRTAMGVKGITLDEGEKCISMVTTKRFDTALLAVTDNGFG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        L +RG  G +  K   + G  + 
Sbjct: 719 KRSRVEDYRLTRRGARGVITLKAHEKVGALIG 750



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 7/184 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 ++A+   E D L  A       +I+L    G     P   + S       +   
Sbjct: 629 HPRKNGIAAITIDEHDELLDARLTDGDHQIILAKNSGFVVRFPEAEIRSMGRTAMGV-KG 687

Query: 594 IDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           I L+  +  ++          LL V+  G        +     R  +  + + + EK+  
Sbjct: 688 ITLDEGEKCISMVTTKRFDTALLAVTDNGFGKRSRVEDYRLTRRGARGVITLKAHEKVGA 747

Query: 653 VV----KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           ++        D + ++     +    +  I    R   GVRL     G I   +      
Sbjct: 748 LIGLLDVNDDDDLIIITAQGIVNRQHVSDIRLTGRNTSGVRLVRLMAGDIISALARVPKS 807

Query: 708 GLTW 711
               
Sbjct: 808 DEEV 811


>gi|68250206|ref|YP_249318.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP]
 gi|229845342|ref|ZP_04465474.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1]
 gi|68058405|gb|AAX88658.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP]
 gi|229811795|gb|EEP47492.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1]
          Length = 880

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/816 (31%), Positives = 400/816 (49%), Gaps = 73/816 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F           +         A   
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQED 535

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   KE D ++  L A+T D IL  S+ G+
Sbjct: 536 VVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGR 595

Query: 572 AYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +
Sbjct: 596 LYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKI 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +E       G   L +  E+++  V    G + + +     +++ F+ + +  M R  
Sbjct: 656 ALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLA 715

Query: 685 KGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGR 717
            GVR                               D  I  V+   + +G    + +   
Sbjct: 716 TGVRGIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEGEILTATQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK +++
Sbjct: 776 GYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V     ++L  +  G     + SE    +R  K  + +       K+    
Sbjct: 753 NIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 812

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V   D + ++ +   L+   + ++  + R  +GVRL    D      +
Sbjct: 813 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSL 861


>gi|313679781|ref|YP_004057520.1| DNA gyrase subunit a [Oceanithermus profundus DSM 14977]
 gi|313152496|gb|ADR36347.1| DNA gyrase subunit A [Oceanithermus profundus DSM 14977]
          Length = 804

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/757 (32%), Positives = 397/757 (52%), Gaps = 31/757 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             V  V +   +++ ++ YA+S I  RA+PD+RDG KPV RRI++AM + GL  G    K
Sbjct: 2   SQVLPVEITEEVKQSFINYAMSVIVNRALPDVRDGLKPVQRRILYAMYQEGLLPGRKHSK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA +VGEVI K HPHGDQ+VYD++VRLAQ +  RYPLI GQGNFG+IDGD AAAYRYTEA
Sbjct: 62  SAGVVGEVIKKYHPHGDQAVYDAMVRLAQEWNLRYPLIDGQGNFGSIDGDPAAAYRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D+D VDF + ++    EP V P+ FPNLLANG++GIAVGMATSIP H
Sbjct: 122 RLSPIALELLRDIDKDTVDFVENFDGTAEEPTVLPAGFPNLLANGSTGIAVGMATSIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A  A+ID+PEI+++ +++++ GPDFPTGG +  +R  +  +Y  G+G  R+RA
Sbjct: 182 NLGELINALAAMIDDPEITLDGVMQHLPGPDFPTGGRL--NRVGLKRAYETGKGSLRLRA 239

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R    E   G   +VVTEIPYQV K+ LI +IA L+ AK++  +  +RDES      ++ 
Sbjct: 240 RVR-TEERGGRKMLVVTEIPYQVNKASLISQIASLVRAKKLEDISGLRDESDRQGMRIVI 298

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  +PD+++  +F  ++++T F +NM  +     P+V+PL  +++ +L HRREV+ R
Sbjct: 299 ELKRGANPDVVLNQLFKQTNLQTSFTINMLAIV-NGEPRVLPLLAMMRAYLDHRREVVVR 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           R+ F ++  + R  +L+GLLIA  ++DE+IA+IR            + RF+L+E Q  AI
Sbjct: 358 RTRFDLKKAEDRAHVLEGLLIALDHLDEVIALIRASRDGAEAKAGLMQRFALSEVQAQAI 417

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++++E   L      + ++L    + W  +  E+  ++E F+    
Sbjct: 418 LDMRLQRLTGLEREKLQAEYRELQETIAYLRAILADETRLWGVVKDELLAIREKFADE-- 475

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RRT   E +        + +IE EP+ + ++  G+++                  A 
Sbjct: 476 ---RRTLITEFAEGFNP---EDLIEDEPMVITMTAAGFLKRTPLEDYRAQGRGGMGAKAG 529

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
             K+ D       A   D +L  +  G+ Y      L        G  ++  + L   ++
Sbjct: 530 RTKDEDEATRVFVAQMHDDLLFFTNRGRVYREKVFELPEAQRTARGTHVKSFLPLEEGEE 589

Query: 602 IVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-T 657
           I               +  + KG        +       G   + +   + +  V    +
Sbjct: 590 IKALLSLRSLTDPGYFVFATRKGVVKKTAIRDYQNLNASGLIAINLVEGDDLVDVRIAGS 649

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE-GLTWIDSA 715
           G  V +     K + F +D++    R  +GVR    K+G     +     +     +  +
Sbjct: 650 GAQVVMATRGGKAIRFPLDEVRATGRASQGVRGIRLKEGDEVVSLIVVPKDWEGDLLAIS 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +        L  RGG G +  K   + G   +
Sbjct: 710 SHGYGKRTPLEEYPLQGRGGQGVITFKLNEKVGHLTA 746



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 8/193 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+           ++  L A++  EGD L     A +  ++++ +  GKA   P   + +
Sbjct: 613 VVKKTAIRDYQNLNASGLIAINLVEGDDLVDVRIAGSGAQVVMATRGGKAIRFPLDEVRA 672

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                + ++  I L    ++V+  V        LL +SS G        E     R G+ 
Sbjct: 673 TGRASQGVRG-IRLKEGDEVVSLIVVPKDWEGDLLAISSHGYGKRTPLEEYPLQGRGGQG 731

Query: 641 FLKVSSEEK---MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            +     EK   +  ++ V GD   +V       +   +  I + SR   GV++ +   G
Sbjct: 732 VITFKLNEKVGHLTALLAVDGDEDLLVLSRGGLAIRTRVRTISQYSRPTSGVKVMNLAAG 791

Query: 696 GISDVICFKICEG 708
                        
Sbjct: 792 DEIASAFVIKPHD 804


>gi|317495093|ref|ZP_07953464.1| DNA gyrase, subunit A [Gemella moribillum M424]
 gi|316914800|gb|EFV36275.1| DNA gyrase, subunit A [Gemella moribillum M424]
          Length = 815

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/761 (32%), Positives = 415/761 (54%), Gaps = 29/761 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              + N+   ++   +E  +L Y++S I  RA+PD+RDG KPVHRRI++A +E+GL    
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNELGLTHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++KSA +VGEV+ K HPHGD + Y ++VRLAQ F  RYP++ GQGNFG+IDGD AAA R
Sbjct: 62  PYRKSAAVVGEVMAKYHPHGDLATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +L+ +++D VD ++ Y+    EP V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEARMSKIASEMLRDINKDTVDMQENYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL DN EI+I +L+  I GPDFPTG  ++  R  IV++Y  GRG  
Sbjct: 182 IPPHNLGEVIDGVVALADNSEITIAELMTKIKGPDFPTGAHLL-GRSGIVKAYTTGRGSI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R +  +E++  G   IV+TEIPYQV K++L+EKIAEL   K+I  + D+RDES     
Sbjct: 241 IMRGKTEIEQIKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R ++ ++++ +++ L+ +++ F +NM  L    VP+++ L   L  +L H++E
Sbjct: 301 RIVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALV-NGVPKLLNLKEALYHYLEHQKE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL IA  NID II++IR     +      + +FSLT+ Q
Sbjct: 360 VVVRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKTGLMEQFSLTDVQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E   L+     ++ +L   ++    +  E+ E+K+ + 
Sbjct: 420 AQAILDMRLQRLTGLERDKIEEEYKKLMELIADLEDILAKPERVIEIVKEELLEIKDKYG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                 +RR+   E          + +IEKE I + +S+  +I+ L + +          
Sbjct: 480 D-----KRRSVIIEGQID--QIDNEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRGGRG 532

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           ++ +   + D++   L   T D IL  +  GK YTL    +       +   I  L+++ 
Sbjct: 533 VNGMTTNDEDNIAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLEIE 592

Query: 598 HNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             + + +        +    L+  +  G     +  +  +  +KGK  LK+   + +  V
Sbjct: 593 KEEKVNSIIAISDLQEEDTSLIFSTKFGIIKKSKLGDYASILKKGKIALKLDDGDSLIDV 652

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            ++T D  + +V  N + +  +  ++ +M R  +GV+  +        V    + E    
Sbjct: 653 QRITDDQDIMIVTANGQAIRINAKKVRQMGRVSRGVKGITLSPDDYV-VGMEVVDESKKI 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        +        +  RGG G  V K   ++GK ++
Sbjct: 712 LTVTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVA 752



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 6/176 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
               AL   +GDSL           I++++ +G+A  + A  +         +   I L+
Sbjct: 636 KGKIALKLDDGDSLIDVQRITDDQDIMIVTANGQAIRINAKKVRQMGRVSRGV-KGITLS 694

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKV-SSEEKMKLVV 654
            +  +V   V D + K+L V+  G   I + +E     R GK     KV     K+  V 
Sbjct: 695 PDDYVVGMEVVDESKKILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVAVK 754

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            +TG + + ++ +   ++   I  I  + R   GV++ +  D      +     E 
Sbjct: 755 SITGNEDLMIMTDQGIIIRIDISTISTLGRTATGVKVINLVDDQKVATVTLAEKEE 810


>gi|285018500|ref|YP_003376211.1| DNA gyrase, subunit a protein [Xanthomonas albilineans GPE PC73]
 gi|283473718|emb|CBA16221.1| probable dna gyrase, subunit a protein [Xanthomonas albilineans]
          Length = 935

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/856 (30%), Positives = 393/856 (45%), Gaps = 117/856 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G      +
Sbjct: 4   SAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGDSAAA RYT
Sbjct: 64  YKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++   ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP
Sbjct: 124 EARMSRLTHELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +ALIDNP+I ++ L+EYI GPDFPT G IV     I+  YR GRG  R+
Sbjct: 184 PHNLTESINACIALIDNPQIDVDGLMEYIPGPDFPTAG-IVNGTAGIIAGYRTGRGRVRM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR  +E    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +
Sbjct: 243 RARAEIEIQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    D+++ +++  + ME+ F +NM  L     PQ++ L  +L+ ++ HRREV+
Sbjct: 303 YIEVKRGEAADVVLNNLYQQTQMESVFGINMVALVD-GRPQLLNLKQMLEAFVRHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ F ++    R  IL+GL +A  NIDE+I +I+    P                   
Sbjct: 362 TRRTIFELRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGA 421

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + LTE Q   IL +RL  L  LE+ ++  E   LL
Sbjct: 422 LLSAAGAEASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLL 481

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
                +  +L +       I  E+  ++E +  +     R +          A     + 
Sbjct: 482 EAISGLIRILENPDVLLEVIREELVSIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVT 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                          R+ +      SA   KE D +      +T D +L  ++ GK + L
Sbjct: 542 LSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFWL 601

Query: 576 PAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
           P   L        G  +   I L   + +        Y     +   + KG       SE
Sbjct: 602 PVYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVREYADGHYVFFATRKGMVKKTPLSE 661

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSI-------------- 675
                ++GK  + +   + +  V    G+  V +   N K + FS               
Sbjct: 662 FAYQLKRGKVAINLDEGDALVDVALTDGERDVLLFASNGKTVRFSERPKDEEVDEVAVDE 721

Query: 676 ------------------DQ-----------IPEMSR-GKGVRLQSY-KDGGISDVICFK 704
                             D+           +    R  +GVR     K   +  +I  +
Sbjct: 722 AAADDALAADDEAAGEDGDETRGARRKSRGGVKPTGRSSRGVRGIRLAKSEYVVSLIVAE 781

Query: 705 ICEG---------------------------LTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             EG                              + +    Y +           RG  G
Sbjct: 782 PAEGQDEDADDADLAQEAEADAQTRTADDADAYILTATENGYGKRTPLGEYPRKGRGTQG 841

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK + +
Sbjct: 842 VIGIQTSERNGKLVGA 857



 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKMKLVVKVT-GDHVAVV 664
           D+   +L  +  G        E     R   G   ++ S    K+   V ++  D V ++
Sbjct: 810 DADAYILTATENGYGKRTPLGEYPRKGRGTQGVIGIQTSERNGKLVGAVLLSVKDEVLLI 869

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            +   L+     +I  + R  +GV L     G     +
Sbjct: 870 SDGGTLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAV 907


>gi|229846834|ref|ZP_04466941.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1]
 gi|229810323|gb|EEP46042.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1]
          Length = 884

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/816 (31%), Positives = 400/816 (49%), Gaps = 73/816 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F           +         A   
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQED 535

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   KE D ++  L A+T D IL  S+ G+
Sbjct: 536 VVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGR 595

Query: 572 AYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +
Sbjct: 596 LYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKI 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +E       G   L +  E+++  V    G + + +     +++ F+ + +  M R  
Sbjct: 656 ALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLA 715

Query: 685 KGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGR 717
            GVR                               D  I  V+   + +G    + +   
Sbjct: 716 TGVRGIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEGEILTATQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK +++
Sbjct: 776 GYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V     ++L  +  G     + SE    +R  K  + +       K+    
Sbjct: 753 NIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 812

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V   D + ++ +   L+   + ++  + R  +GVRL    D      +
Sbjct: 813 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSL 861


>gi|182684052|ref|YP_001835799.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14]
 gi|182629386|gb|ACB90334.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14]
          Length = 841

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 20  MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 79

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 80  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 139

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 140 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 199

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 200 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 258

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 259 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 318

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 319 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 377

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 378 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 437

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 438 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 497

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 498 -----KRRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 550

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 551 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 610

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 611 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 670

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 671 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 729

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 730 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 769


>gi|148825854|ref|YP_001290607.1| DNA gyrase subunit A [Haemophilus influenzae PittEE]
 gi|319896958|ref|YP_004135153.1| DNA gyrase (type ii topoisomerase), subunit a [Haemophilus
           influenzae F3031]
 gi|148716014|gb|ABQ98224.1| DNA gyrase subunit A [Haemophilus influenzae PittEE]
 gi|317432462|emb|CBY80818.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae F3031]
          Length = 882

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/816 (31%), Positives = 400/816 (49%), Gaps = 73/816 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F           +         A   
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQED 535

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   KE D ++  L A+T D IL  S+ G+
Sbjct: 536 VVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGR 595

Query: 572 AYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +
Sbjct: 596 LYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKI 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +E       G   L +  E+++  V    G + + +     +++ F+ + +  M R  
Sbjct: 656 ALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLA 715

Query: 685 KGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGR 717
            GVR                               D  I  V+   + +G    + +   
Sbjct: 716 TGVRGIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEGEILTATQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK +++
Sbjct: 776 GYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V     ++L  +  G     + SE    +R  K  + +       K+    
Sbjct: 753 NIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 812

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V   D + ++ +   L+   + ++  + R  +GVRL    D      +
Sbjct: 813 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSL 861


>gi|145638835|ref|ZP_01794443.1| DNA gyrase subunit A [Haemophilus influenzae PittII]
 gi|145271807|gb|EDK11716.1| DNA gyrase subunit A [Haemophilus influenzae PittII]
 gi|309750818|gb|ADO80802.1| DNA gyrase subunit A [Haemophilus influenzae R2866]
          Length = 880

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/816 (31%), Positives = 400/816 (49%), Gaps = 73/816 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSW 415

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F           +         A   
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQED 535

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   KE D ++  L A+T D IL  S+ G+
Sbjct: 536 VVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGR 595

Query: 572 AYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +
Sbjct: 596 LYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKI 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +E       G   L +  E+++  V    G + + +     +++ F+ + +  M R  
Sbjct: 656 ALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLA 715

Query: 685 KGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGR 717
            GVR                               D  I  V+   + +G    + +   
Sbjct: 716 TGVRGIKLALTNDISDDESAVEIEEISDDNAEASLDLNIDKVVSLVVPKGEGAILTATQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK +++
Sbjct: 776 GYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V      +L  +  G     + SE    +R  K  + +       K+    
Sbjct: 753 NIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 812

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V   D + ++ +   L+   + ++  + R  +GVRL    D      +
Sbjct: 813 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSL 861


>gi|218890640|ref|YP_002439504.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58]
 gi|218770863|emb|CAW26628.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58]
          Length = 923

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/839 (30%), Positives = 412/839 (49%), Gaps = 110/839 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LAL+DNP++++++L++YI GPDFPT G I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAG-IINGRAGIIEAYRTGRGRIYI 242

Query: 253 RARWCVEEV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VEE+  G G   I++TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R    ++++ +++  + +++ F +N+  L     P+ + L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVD-GQPRTLNLKDMLEVFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ + ++    R  IL+G  +A  NID +I +I++   P                 
Sbjct: 362 VVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAV 421

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++ SE   
Sbjct: 422 EAMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L    ++  +L +  +    I  E+  VK  F  +     RRT       +        
Sbjct: 482 ILNLIGELIRILTNPARLMEVIREELEAVKAEFGDA-----RRTEIV---ASQVDLTIAD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D ++  L A++   +LL
Sbjct: 534 LITEEDRVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD-------------- 609
            S+ GK Y L    +        G  +  L+ L+  + I      D              
Sbjct: 594 FSSKGKVYWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDL 653

Query: 610 --------------------------------STCKLLVVSSKGNAFIVEESEIIANTRK 637
                                           +   + + ++ G        +       
Sbjct: 654 DEAEGAVLEGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSS 713

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   LK+   + +       G   V +     K++ F+   +  M R  +GVR      G
Sbjct: 714 GLIALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRLGKG 773

Query: 696 GISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +I   I E G   + ++ R + +           RGG G +      R+G  +++
Sbjct: 774 Q--QLISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAA 830



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 55/142 (38%), Gaps = 6/142 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++L S+ GK     A +++   G        + L   Q +++  + +S  ++L  S +G 
Sbjct: 738 VMLFSSAGKVIRF-AESVVRIMGRNARGVRGMRLGKGQQLISMLIPESGAQILTASERGF 796

Query: 623 AFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 S+     R G+  + +     +   +  V    G+ + ++ +   L+   +D++
Sbjct: 797 GKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEV 856

Query: 679 PEMSR-GKGVRLQSYKDGGISD 699
               R  +GV L       +  
Sbjct: 857 SLSGRNTQGVTLIKLASDEVLV 878


>gi|152985032|ref|YP_001347342.1| DNA gyrase subunit A [Pseudomonas aeruginosa PA7]
 gi|150960190|gb|ABR82215.1| DNA gyrase, A subunit [Pseudomonas aeruginosa PA7]
          Length = 921

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/839 (30%), Positives = 412/839 (49%), Gaps = 110/839 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LAL+DNP++++++L++YI GPDFPT G I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAG-IINGRAGIIEAYRTGRGRIYI 242

Query: 253 RARWCVEEV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VEE+  G G   I++TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R    ++++ +++  + +++ F +N+  L     P+ + L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVD-GQPRTLNLKDMLEVFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ + ++    R  IL+G  +A  NID +I +I++   P                 
Sbjct: 362 VVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAV 421

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++ SE   
Sbjct: 422 EAMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L    ++  +L +  +    I  E+  VK  F  +     RRT       +        
Sbjct: 482 ILNLIGELIRILTNPARLMEVIREELEAVKAEFGDA-----RRTEIV---ASQVDLTIAD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D ++  L A++   +LL
Sbjct: 534 LITEEDRVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD-------------- 609
            S+ GK Y L    +        G  +  L+ L+  + I      D              
Sbjct: 594 FSSKGKVYWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDL 653

Query: 610 --------------------------------STCKLLVVSSKGNAFIVEESEIIANTRK 637
                                           +   + + ++ G        +       
Sbjct: 654 DEAEGAVLEGEVVEAAEIEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSS 713

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   LK+   + +       G   V +     K++ F+   +  M R  +GVR      G
Sbjct: 714 GLIALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRLGKG 773

Query: 696 GISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +I   I E G   + ++ R + +           RGG G +      R+G  +++
Sbjct: 774 Q--QLISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAA 830



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 56/142 (39%), Gaps = 6/142 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++L S+ GK     A +++   G        + L   Q +++  + +S  ++L  S +G 
Sbjct: 738 VMLFSSAGKVIRF-AESVVRIMGRNARGVRGMRLGKGQQLISMLIPESGAQILTASERGF 796

Query: 623 AFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 S+     R G+  + +     +   +  V    G+ + ++ +   L+   +D++
Sbjct: 797 GKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEV 856

Query: 679 PEMSR-GKGVRLQSYKDGGISD 699
              SR  +GV L       +  
Sbjct: 857 SLSSRNTQGVTLIKLASDEVLV 878


>gi|184154482|ref|YP_001842822.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956]
 gi|183225826|dbj|BAG26342.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956]
          Length = 836

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/757 (30%), Positives = 386/757 (50%), Gaps = 16/757 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               +   +  V+L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+  
Sbjct: 2   PEQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA
Sbjct: 62  DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+M+++A  +L+ +++D VDF+D Y+  + EP V P++FPNLL NG SGIAVGMA
Sbjct: 122 MRYTEAKMSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP+HN+ E+  A   L++NP++++ +L++ + GPDFPTGG +V  +  I ++Y  G+G
Sbjct: 182 TNIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGG-VVMGKAGIRQAYESGQG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +EE   G   IVV EIPY V K++LIE+IA L   K I  + D+ DE+  +
Sbjct: 241 SIIVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDRE 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R    ++++ +++ ++ M+T +  NM  +     P+++ L  IL+ +L H+
Sbjct: 301 GMRIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVK-GAPKILSLKEILQYYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTE 425
            EV+ RR+ F ++    R  I+ GL IA  +ID II IIR+ +     K  ++  +SL++
Sbjct: 360 EEVVRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSD 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+LRL  L  LE  +I+ E   L+A       +L   ++    I  E+ E++  
Sbjct: 420 RQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADYKDILAHQERINQIIYDELMEIQNK 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALH 544
           F        +      +   D    +  ++       V        ++       +  + 
Sbjct: 480 FGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNGYVKRLPVDEFKAQNRGGRGVKGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDI 602
               D ++  + + T D +L  +  GK + +    +        G  I  L+D++  + +
Sbjct: 540 VHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIPEYGRAAQGIPIINLLDVDGKEKV 599

Query: 603 VTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                      D    L  V+ +G       +E       G   + +   +++  V  V 
Sbjct: 600 TAVINVAQREDDLQKDLFFVTRQGTVKRTPVTEFKNIRSNGIKAINLHEGDELINVAIVD 659

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D   ++G +      F +  +  M R   GVR    +DG    +    + E    +  +
Sbjct: 660 DDQNMILGTHLGHAATFKVSAVRSMGRSAAGVRGARLRDGDYL-IGAAPLNEDDQVLVIS 718

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG+G        ++G    
Sbjct: 719 EKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPLAG 755



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 61/183 (33%), Gaps = 6/183 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  + A++  EGD L           ++L +  G A T     + S      A    
Sbjct: 635 NIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSMGRSA-AGVRG 693

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
             L     ++ A   +   ++LV+S KG       SE     R G     V+       +
Sbjct: 694 ARLRDGDYLIGAAPLNEDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPL 753

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             +  V GD  + VV +   ++ F ++ + +  R   GV L       +   +     E 
Sbjct: 754 AGLTTVQGDEDLMVVTDKGVIIRFGVESVSQTRRSAIGVHLIKMDADSVVATMTKVEKET 813

Query: 709 LTW 711
              
Sbjct: 814 AET 816


>gi|255263069|ref|ZP_05342411.1| DNA topoisomerase IV, A subunit [Thalassiobium sp. R2A62]
 gi|255105404|gb|EET48078.1| DNA topoisomerase IV, A subunit [Thalassiobium sp. R2A62]
          Length = 771

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/773 (50%), Positives = 528/773 (68%), Gaps = 26/773 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M      N+    E       LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++A
Sbjct: 1   MSDLTDDNNMDPPETGEVLEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGN
Sbjct: 61  MRELRLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+ AA RYTEARMT  AE +L+G++E+AVD+R+ Y+   +EPVV P+ FPNLLANG+
Sbjct: 121 IDGDNPAASRYTEARMTAAAEALLEGLNENAVDYRENYDGTLTEPVVLPATFPNLLANGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +A L LI  P    E L+E + GPDFPTGG+IVE +E+I+
Sbjct: 181 SGIAVGMATNIPPHNIPELVDACLHLIKAPNARDETLIEMVPGPDFPTGGVIVEPKENIL 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG FR+R +W +E++ RG W IVVTEIPYQVQKS+LIEKIAE+I  K+IP+L D
Sbjct: 241 NAYATGRGSFRLRCKWEIEKLDRGQWQIVVTEIPYQVQKSKLIEKIAEVIQLKKIPILAD 300

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESA+DVR+V+ PK++++DP++LM  ++  SD+E RF +NMNVL  G  P+V  L  +
Sbjct: 301 VRDESADDVRMVIEPKSKNVDPEVLMNMLYRNSDLEVRFSMNMNVLIDGLTPKVCSLKEV 360

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------ 414
           L+ +L HRREVL RRS  RM  ID R+E+L+G ++A+LN+D +I IIR +D PK      
Sbjct: 361 LRAFLDHRREVLIRRSQHRMAKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDPKAALIRE 420

Query: 415 -----------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                            P +     L+E Q +AILN+RLRSLR+LEE ++  E   L+ E
Sbjct: 421 DWSLTHKRAMDETDYLSPALRDEEGLSEVQAEAILNMRLRSLRRLEELELLREQSALMEE 480

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           + +++ LL+S   QW++I+ ++RE ++ F K+   G RRT F E +   +    +AMIE+
Sbjct: 481 RAELEDLLDSDDLQWSRISEQLRETRKQFGKNYKGGARRTLFAE-AAEVEDVPIEAMIER 539

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           EPIT+V S  GW+R+L  H      L FK+GD  +   HA TTDR+L+  T+G+ YT+ A
Sbjct: 540 EPITIVCSKMGWVRALSGHVDLARELKFKDGDEARFMFHAETTDRLLVFGTNGRFYTVSA 599

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            NL  GRG GE ++L++DL +  DIV  F++    KLLV SS G+ FIV E+++IA TR 
Sbjct: 600 SNLPGGRGMGEPLRLMVDLPNEADIVDFFIHQPERKLLVASSAGDGFIVPEADVIAQTRT 659

Query: 638 GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI 697
           GK  L V      K+ + VTGDHVA VGENRK+L+F I+++PEM RGKGVRLQ YKDGG+
Sbjct: 660 GKQVLNVKDGVMAKVCITVTGDHVACVGENRKVLVFPIEELPEMGRGKGVRLQKYKDGGL 719

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           SDV  F +  GL+W D AGR   R+E +L  W GKR   G + P+GFPR  +F
Sbjct: 720 SDVATFTMAGGLSWQDPAGR--TRTETELAEWAGKRASAGRMAPRGFPRDNRF 770


>gi|306825077|ref|ZP_07458419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304432513|gb|EFM35487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 822

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/760 (31%), Positives = 391/760 (51%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ + ++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDISKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +              L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMGKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +         + +IE+  + + +S++G+I+          K     +
Sbjct: 479 -----KRRTEL--MVGEVLTLEDEDLIEETDVLITLSDKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GVR  + +DG         I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRGVNLRDGDTVVGASV-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKNGPLAG 750


>gi|192291356|ref|YP_001991961.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris TIE-1]
 gi|192285105|gb|ACF01486.1| DNA topoisomerase IV, A subunit [Rhodopseudomonas palustris TIE-1]
          Length = 753

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/737 (56%), Positives = 545/737 (73%), Gaps = 2/737 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKS
Sbjct: 12  EIHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEAR
Sbjct: 72  AKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L G+DED V FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN
Sbjct: 132 MTDVARLLLDGIDEDGVAFRANYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LI+ P+   + LL ++ GPDFPTGGII++S+ESI E+Y  GRG FR RA+
Sbjct: 192 AAELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAEAYTTGRGAFRTRAK 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE  RG+W +VVT+IP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVRIV+ P
Sbjct: 252 WEQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRIVIEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+RS+DP L+MES+F L+++E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL RR
Sbjct: 312 KSRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S +R   I+ R+E+L G LIAYLNID++I IIR ED+PKPV++  F+LTE Q +AILN+R
Sbjct: 372 SEYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTEIQAEAILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE++I++E  NL AE + I+++L S  +QW ++  ++R+V+E+F   T LG+R
Sbjct: 432 LRSLRKLEEFEIRTEDKNLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L+FK+ D L  + 
Sbjct: 492 RTQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDKLGQSF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A TT ++LLL+T+G+ Y L    L  GRGHGE I++ ID+  +  IVT FV+    K L
Sbjct: 552 FAETTSKLLLLATNGRFYALDVAKLPGGRGHGEPIRMFIDMEQDAAIVTVFVHTGGRKFL 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+V E E + +TRKGK  L V   +E +   VV    D VAV+G+NRK++IF
Sbjct: 612 IASHDGQGFLVNEDECVGSTRKGKQILNVDVPNEARALTVVSEGDDSVAVIGDNRKMVIF 671

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            +DQ+PEM+RG+GVRLQ YKDGG+SD+  F   +GL W DSAGR ++ +  +L  W G R
Sbjct: 672 PLDQVPEMTRGRGVRLQKYKDGGLSDIATFSSKQGLGWRDSAGREFSATMKELAEWRGNR 731

Query: 734 GGVGSLVPKGFPRSGKF 750
              G L PKGFP+S KF
Sbjct: 732 ADAGRLPPKGFPKSNKF 748


>gi|270292591|ref|ZP_06198802.1| DNA gyrase, A subunit [Streptococcus sp. M143]
 gi|270278570|gb|EFA24416.1| DNA gyrase, A subunit [Streptococcus sp. M143]
          Length = 827

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 6   MQDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 66  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 125

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 126 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 185

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 186 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 244

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KR+  +  +RDES  +   
Sbjct: 245 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRLEGITAVRDESNREGVR 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 305 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 364 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFRLSERQS 423

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 424 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILVKPERVAQIIKEELDEVKRKFGD 483

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +         + +IE+  + + +SN+G+I+          K     +
Sbjct: 484 -----KRRTEL--MVGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 536

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 537 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 596

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 597 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 656

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GVR  + ++G         I +    +
Sbjct: 657 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRGVNLREGDTVVGASV-ITDQDEVL 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 716 IITEKGYGKRTLATEYPTKCRGGKGMKTANVAEKNGPLAG 755


>gi|170016364|ref|YP_001727283.1| DNA gyrase, A subunit [Leuconostoc citreum KM20]
 gi|169803221|gb|ACA81839.1| DNA gyrase, A subunit [Leuconostoc citreum KM20]
          Length = 851

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/760 (31%), Positives = 385/760 (50%), Gaps = 19/760 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  N      ++  +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MSEQNDT---RIRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R+ L+ G GNFG++DGDS
Sbjct: 58  NTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++VA  +++ +++D V+F   Y+ E+ EP V PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARLSKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPSRFPNLLVNGATGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+  A   L++NP+ +   L++ + GPDFPTGG IV  +  I  +Y  
Sbjct: 178 GMATNIPTHNLGEVISALHVLMNNPDATTTDLMDVLPGPDFPTGG-IVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +E+   G   I+VTE+PY V K+RLIE+I+EL   KRI  +  IRDES
Sbjct: 237 GRGRVTVRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   +     R     +++ +++  + ++T F  NM  ++ G  PQ M L  IL  +L
Sbjct: 297 DRDGLRISIDVRRDTSASVILNNLYKETLLQTNFSFNMLAIN-GGKPQTMSLKDILVAYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            H+REV+ RR++F +Q    R  IL+GL IA  +ID II IIR+    +         ++
Sbjct: 356 THQREVIRRRTAFDLQKAQARAHILEGLRIALDHIDAIINIIRSSATSEEAKTRLIDGYA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +I+ E   L+A    +  +L   ++    I  E+ E+
Sbjct: 416 LSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALIADLKDILAHQERVDQIIYDELLEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +     +      +   D    +  ++       +    +   ++       + 
Sbjct: 476 QTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYIKRVPQAEFKAQNRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            ++  + D +   L   T D +L  +  GK Y +    +       +   +  L++   +
Sbjct: 536 GMNVNDEDFVDQMLATSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVNLLNFEDD 595

Query: 600 QDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           + I           +S   L  V+  G       SE       G   L +   +++  V 
Sbjct: 596 EKIQAVISVRGEASESKDYLFFVTRLGVVKRTAVSEFANIRTNGLKALTLHDGDEVLSVQ 655

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   + +  +    + F+ D +  M R   GVR    +D  +  +    +      +
Sbjct: 656 ITNGTQSILIATQAGYSVRFAEDSVRVMGRSAAGVRGIRLRDNDVV-IGADVVTSSDNVL 714

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + +        +  RGG G        ++G    
Sbjct: 715 VITEKGFGKQTPASEYPIKGRGGKGIKTANITDKNGVLAG 754



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 6/181 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL   +GD +      + T  IL+ +  G +    A + +   G   A    
Sbjct: 634 NIRTNGLKALTLHDGDEVLSVQITNGTQSILIATQAGYSVRF-AEDSVRVMGRSAAGVRG 692

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L  N  ++ A V  S+  +LV++ KG       SE     R GK     +  +K   +
Sbjct: 693 IRLRDNDVVIGADVVTSSDNVLVITEKGFGKQTPASEYPIKGRGGKGIKTANITDKNGVL 752

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             +  + G + + V      ++ F+ D + +  R   GVRL   ++G     +     E 
Sbjct: 753 AGMTIIHGHEDIMVTTTQGVMIRFAADSVSQTGRATLGVRLIRLEEGTKVATLTKVDQED 812

Query: 709 L 709
           L
Sbjct: 813 L 813


>gi|114570117|ref|YP_756797.1| DNA topoisomerase IV subunit A [Maricaulis maris MCS10]
 gi|114340579|gb|ABI65859.1| DNA topoisomerase IV subunit A [Maricaulis maris MCS10]
          Length = 758

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/745 (52%), Positives = 529/745 (71%), Gaps = 2/745 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +       ++   +   AL  RYLAYALSTI +RA+PD RDG KPVHRR+++AM E+ 
Sbjct: 1   MGDHFDPDGGHIIEETFNEALSRRYLAYALSTITQRALPDARDGLKPVHRRLLYAMRELK 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L+   AFKKSAR+VG+VIGK HPHGDQSVY++LVRLAQ F  RYPL+ GQGNFGNIDGD 
Sbjct: 61  LNPDQAFKKSARVVGDVIGKYHPHGDQSVYEALVRLAQDFASRYPLVEGQGNFGNIDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T+ AEL+LQ +D+  VDF +TY+  + EP+V P  FPNLLANG++GIAV
Sbjct: 121 AAAMRYTEARLTKAAELLLQDIDQGTVDFEETYDGSEREPLVLPGAFPNLLANGSTGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATS+P HNV EIC AALALID PE   E LL++I GPD PTGG IVE  E+I  +Y  
Sbjct: 181 GMATSVPPHNVAEICAAALALIDKPETETEALLKHIKGPDLPTGGTIVEPPEAIRSAYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFRVRA+W  E++GRG W IVVTEIPY VQKS+L+E+IA+L+ AK++PLL+D+ DES
Sbjct: 241 GRGGFRVRAKWEKEDIGRGMWRIVVTEIPYLVQKSKLVERIAQLMDAKKLPLLDDVLDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ED+R+VL PK++ +DPD+LMES+F L+D+ETR  LN+NVL    VP+VM L  +L+ WL
Sbjct: 301 TEDIRLVLEPKSKLVDPDMLMESLFKLTDLETRVSLNLNVLDPRGVPRVMGLREVLQIWL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HRREV  RR++ R+  ++ R+E+L G LI Y ++DE+I IIR ED+PK  +++ F LTE
Sbjct: 361 EHRREVAVRRATTRLAKVEDRLEVLAGYLIVYADLDEVIRIIRFEDEPKAKLMAHFELTE 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLR+LRKLEE +I+ E  NL AE++ +  L+ S   QW+++  E++ + EI
Sbjct: 421 RQAEAILNMRLRALRKLEELEIRKEDTNLRAERKTLKELIGSTALQWDKVRGEVKSLGEI 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           ++++T LG+RRT F +          +A + +EPIT V+S RGW+R+LK H  D++ L F
Sbjct: 481 YAETTPLGKRRTVFDKAPDISGEAPIEAFVVREPITAVLSERGWVRALKGHINDVTELKF 540

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           KEGD    A+   TTDR+L+ +TDGK YTL A  L  GRGHGE ++L +DL  +   +  
Sbjct: 541 KEGDKSAFAVKCETTDRLLMFATDGKFYTLEASKLPGGRGHGEPVRLHVDLPDDAAPIGL 600

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           F YD    LLV S   + F ++E + +A  + GK  L ++  ++  L +  TGD VA++G
Sbjct: 601 FKYDPERTLLVASDGNSGFRIQEKDCLALKKGGKQILNLAEGDEAFLCIPATGDRVALIG 660

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           EN+KLL+F +++IP MSRGKGV+L   K   ++D   F   +GLTW+D AGR +N   +D
Sbjct: 661 ENKKLLVFELEEIPVMSRGKGVKLLGGKGAKLADATVFNAEDGLTWLDGAGRRFNL--DD 718

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
            L W  KR   G + P+GFPRS +F
Sbjct: 719 WLLWTAKRAQAGKMAPRGFPRSLRF 743


>gi|154253317|ref|YP_001414141.1| DNA topoisomerase IV subunit A [Parvibaculum lavamentivorans DS-1]
 gi|154157267|gb|ABS64484.1| DNA topoisomerase IV, A subunit [Parvibaculum lavamentivorans DS-1]
          Length = 748

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/733 (58%), Positives = 552/733 (75%), Gaps = 3/733 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
              E    ++LR ALEERYLAYALSTI  RA+PD+RDG KPVHRR++ AM ++ LD G+ 
Sbjct: 6   PPPEPEHEINLREALEERYLAYALSTIMHRALPDVRDGLKPVHRRVLFAMRQLKLDPGSG 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSAR+VG+VIG+ HPHGDQSVYD+LVRLAQ F  RYPL+ GQGNFGN+DGD+AAA RY
Sbjct: 66  FKKSARVVGDVIGRYHPHGDQSVYDALVRLAQSFSVRYPLVDGQGNFGNVDGDNAAAMRY 125

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T+VA  +L G+DED VDFRDTY+ EDSEP V P  FP LLANG +GIAVGMATSI
Sbjct: 126 TEARLTEVAAQLLNGIDEDTVDFRDTYDGEDSEPTVLPGAFPQLLANGAAGIAVGMATSI 185

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN  E+C+AAL LI +P    EKL+E++ GPDFPTGGIIVE R +++E+Y  GRGGFR
Sbjct: 186 PPHNAAELCDAALYLIKHPNAKTEKLVEFVKGPDFPTGGIIVEPRAAMLEAYETGRGGFR 245

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRARW  EE+ RG + IVVTEIPYQVQKS+L+EKIAEL+ A+++PLLED+RDESAE++R+
Sbjct: 246 VRARWEQEELPRGGYQIVVTEIPYQVQKSKLVEKIAELLQARKLPLLEDVRDESAEEIRL 305

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL PK R++DP  LMES+F  +++E RFPLNMNVLS G+VP VM L G+L+ WL HR+ V
Sbjct: 306 VLVPKARTVDPAHLMESLFRSTELENRFPLNMNVLSAGQVPGVMSLRGVLRAWLEHRKVV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RRS+FR+  I++R+E+L+G L AYLN+DE+I IIR ED+PKP ++ +F LT+NQ +AI
Sbjct: 366 LVRRSNFRLDKIEKRLEVLEGYLKAYLNLDEVIRIIRQEDEPKPALIKKFKLTDNQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RLRSLRKLEE +I+ E   L AE++ + SL+ S  +QW ++A EI+EVK +F   T 
Sbjct: 426 LNMRLRSLRKLEEMEIRGEHKELSAEQKALKSLVKSEDKQWARVADEIKEVKALFGPKTA 485

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           LG RRT F + + A +    +AMIEKEP+TVV S +GWIR++K H    + + FKEGD+ 
Sbjct: 486 LGARRTKFSD-APAIEYVPMEAMIEKEPVTVVCSKKGWIRTMKGHVGPDTEIKFKEGDAG 544

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           +  LHA TTD++LL +TDG+ YTL    L  GRG+GE ++L+IDL+ + ++V  FV+   
Sbjct: 545 RFLLHAETTDKVLLFATDGRFYTLDVTKLPGGRGNGEPVRLMIDLDESHEVVELFVHQPG 604

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
            KL+V S +GN FIV E E++A  R GK  L V+ +++      V G HVAV+G+NRKLL
Sbjct: 605 RKLIVASHEGNGFIVPEDEVVAMRRAGKQVLNVTGKDEAIACAPVQGTHVAVIGDNRKLL 664

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           IF + ++ EM+RGKGVRLQ Y DGG++DV  F + EGLT  D +GR   R+  DL  W+G
Sbjct: 665 IFPVKEVNEMTRGKGVRLQRYADGGLADVKTFNLKEGLTVYDKSGR--QRNFPDLKDWVG 722

Query: 732 KRGGVGSLVPKGF 744
            R   G L PKGF
Sbjct: 723 ARAQAGRLPPKGF 735


>gi|227543724|ref|ZP_03973773.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300908789|ref|ZP_07126252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri SD2112]
 gi|154705552|gb|ABS84202.1| DNA gyrase A subunit [Lactobacillus reuteri]
 gi|227186292|gb|EEI66363.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300894196|gb|EFK87554.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri SD2112]
          Length = 829

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/765 (30%), Positives = 386/765 (50%), Gaps = 23/765 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   ++ N        +  V+L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ 
Sbjct: 1   MAEQDMPN-------RITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYG 53

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+     +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG+
Sbjct: 54  MNELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGS 113

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEA+M+++A  +L+ ++++ VDF D Y+  + EP V P++FPNLL NG 
Sbjct: 114 VDGDGAAAMRYTEAKMSKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGA 173

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP+HN+ E+      L++NP+I+ E L++ I GPDFPTGG +V  +  I 
Sbjct: 174 SGIAVGMATNIPTHNLGEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGG-VVMGKSGIR 232

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   VRA+  +EE   G   I+V EIPY V K++LIE+IAEL   K I  + D
Sbjct: 233 KAYETGRGTIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITD 292

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + DE+  D   ++    R    ++++ +++ ++ M+T F  NM  +     P+++ L  I
Sbjct: 293 VNDETDRDGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIV-NGAPKILSLKQI 351

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L+ +L H+  V+ RR+ F ++    R  I+ GL IA  +IDEII IIRN       K  +
Sbjct: 352 LQYYLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNEL 411

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++ + L++ Q  AIL++RL  L  LE  +I+ E   L+A       +L   ++    I  
Sbjct: 412 MNNYGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKLMAAIADYKDILAHRERINQIIYD 471

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSH 536
           E+ E+++ F        +      +   D    +  ++       +        +S    
Sbjct: 472 ELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDIIVALTHNGYIKRLPVDEFKSQHRG 531

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLI 594
              +  +   + D ++  + + T D +L  +  GK Y++    +        G  I  L+
Sbjct: 532 GRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQGIPIINLL 591

Query: 595 DLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            +N+ + I           D    L   +  G       +E       G   L +   ++
Sbjct: 592 GINNKEKISAVINVSHETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNGLKALNLHENDE 651

Query: 650 MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  ++ D   ++   N   L F    +  M R   GVR    +D     +    +  
Sbjct: 652 LIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMGRSAAGVRGIRLRDEDYV-IGAAPLNS 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  +   + +        +  RGG+G        ++G  + 
Sbjct: 711 DSKVLVISENGFGKQTPASEYPIKGRGGLGVKTVNVTVKNGPLVG 755



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L AL+  E D L           +++ + +G A +  +  + S
Sbjct: 624 TVKRTAVTEFKNIRSNGLKALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRS 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 A    I L     ++ A   +S  K+LV+S  G       SE     R G    
Sbjct: 684 MGRSA-AGVRGIRLRDEDYVIGAAPLNSDSKVLVISENGFGKQTPASEYPIKGRGGLGVK 742

Query: 643 KVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
            V+       +  +  V GD  + +V +   ++ F I+ + +  R   GV L    +G  
Sbjct: 743 TVNVTVKNGPLVGLTTVNGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDNGAR 802

Query: 698 SDVIC 702
              I 
Sbjct: 803 VATIA 807


>gi|301156556|emb|CBW16027.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           parainfluenzae T3T1]
          Length = 881

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/816 (31%), Positives = 401/816 (49%), Gaps = 73/816 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   +  ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M + G
Sbjct: 1   MTDS---IHSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +  G  + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  ITAGKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+VTE+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNIIDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDH-GQPRLFNLKQIIEAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RRS F ++    R  IL+GL +A  NIDEII IIR   + K           
Sbjct: 356 MHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEIIDIIRQSKERKEAAEKLISRPW 415

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +  S + L+  QVDAIL LRL  L  L   ++ +E 
Sbjct: 416 KLNNEILGLLDAAARPAELAAEFGIKGSDYYLSPEQVDAILELRLHRLTGLATEEVINEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             LL +  ++  ++NS ++    I  E+ +V+  F+          +         A   
Sbjct: 476 KELLVKIAELLHIINSPERLMEVIREELEQVRAQFADERRTEITAASGDIDLEDLIAQED 535

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   K+ D ++  L A+T D IL  S+ G+
Sbjct: 536 VVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSRGR 595

Query: 572 AYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +
Sbjct: 596 LYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEEDKFVIMATAGGIVKKI 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +E       G   L +  E+++  V    G + + +     +++ F+   +  M R  
Sbjct: 656 ALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESAVRAMGRLA 715

Query: 685 KGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGR 717
            GVR                               D  I  V+   + +     + +   
Sbjct: 716 TGVRGIKLALTNDIADDESAVEIEEVSDDNAEETLDLNIDKVVSLVVPKNDGAILTATQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK +++
Sbjct: 776 GYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V  +   +L  +  G     + SE    +R  K  + +       K+    
Sbjct: 753 NIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 812

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKICEGL 709
           +V   D + ++ +   L+   + ++  + R  +GVRL    +         +C    E  
Sbjct: 813 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHVVSLERVCDVDDEDE 872

Query: 710 TWIDSA 715
              D  
Sbjct: 873 GTEDVT 878


>gi|160878168|ref|YP_001557136.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg]
 gi|160426834|gb|ABX40397.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg]
          Length = 899

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/766 (30%), Positives = 384/766 (50%), Gaps = 33/766 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  + + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+     
Sbjct: 2   DENIFDKVHDVDLKKTMETSYIEYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNGPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              +K ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++++  +L  +++D VDF   ++E + EP+V P+++PNLL NGTSGIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLSDINKDTVDFAPNFDETEKEPLVLPARYPNLLVNGTSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRL 245
           +IP HN++EI  A + +IDN     E  +    E + GPDFPTG +I+     I E+YR 
Sbjct: 182 NIPPHNMREIIGAVVRIIDNKIEEKETTIEELLEIVKGPDFPTGAMIL-GTRGIEEAYRT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + ++RDES
Sbjct: 241 GRGKIRVRAVTNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITELRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   +     R ++ ++++  ++  + ++  F + M  L     P+V+ L  +L  +L
Sbjct: 301 DREGMRICIELRRDVNANVILNQLYKHTQLQDTFGVIMLALV-NNQPKVLTLLEMLSYYL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ EV+ RR ++ +     R  IL+GLL A   IDE+I IIR        K  ++ RF 
Sbjct: 360 KHQEEVVTRRITYDLNKAKERAHILEGLLKALDFIDEVINIIRASKNGAMAKERLIERFE 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
             + Q  AI+++RLR+L  LE  +++ E   L     + +++L   K     I  EI+ +
Sbjct: 420 FDDIQAQAIIDMRLRALTGLEREKLQDEFAELQRRIAEFEAILADEKLLLGVIKGEIQVI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------K 534
            + F        RRT+       +     + +I  E   + ++  G+I+ +         
Sbjct: 480 NDKFGDE-----RRTSI---GFDEFDISMEDLIPDENTVIAMTRLGYIKRMTIDNFKSQH 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                +  +   + D ++      T   I+  +  G+ Y L A  +        G AI  
Sbjct: 532 RGGKGIKGMQTIDEDFIEDLFMTTTHHYIMFFTNKGRVYRLKAYEIPESSRTARGTAIVN 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + I        Y     L + +  G     +  E     + G   + +  +++
Sbjct: 592 LLQLLPEERITAIIALKEYKDNRYLFMATKDGIVKKTKIKEYQNIRKTGLQAINLREDDE 651

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  V        + +V +N   + F    +    R   GV   +  +G     +     +
Sbjct: 652 LIEVKTTNSQKDIVLVTKNGMCIRFHEKDVRNTGRASMGVIGMNLTNGDEVVAMQI-HTQ 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G   +  +     +  +       +RGG G    K   ++G  + +
Sbjct: 711 GKYLLTVSEYGLGKLTDLDEFTPQRRGGKGVKCYKITEKTGNVVGA 756



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 68/195 (34%), Gaps = 8/195 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               L A++ +E D L      ++   I+L++ +G        ++ +
Sbjct: 624 IVKKTKIKEYQNIRKTGLQAINLREDDELIEVKTTNSQKDIVLVTKNGMCIRFHEKDVRN 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                  +  + +L +  ++V   ++     LL VS  G   + +  E     R GK   
Sbjct: 684 TGRASMGVIGM-NLTNGDEVVAMQIHTQGKYLLTVSEYGLGKLTDLDEFTPQRRGGKGVK 742

Query: 642 ---LKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              +   +   +     V  +H V ++     ++   ++ I  + R   GV+L +   G 
Sbjct: 743 CYKITEKTGN-VVGAKAVNEEHEVMIITNEGIIIRLEVNGISILGRITSGVKLINIDAGK 801

Query: 697 ISDVICFKICEGLTW 711
              V      +  + 
Sbjct: 802 DIRVASLAKVKESSM 816


>gi|16273182|ref|NP_439419.1| DNA gyrase subunit A [Haemophilus influenzae Rd KW20]
 gi|260581180|ref|ZP_05849000.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW]
 gi|1170144|sp|P43700|GYRA_HAEIN RecName: Full=DNA gyrase subunit A
 gi|1574722|gb|AAC22917.1| DNA gyrase, subunit A (gyrA) [Haemophilus influenzae Rd KW20]
 gi|260092208|gb|EEW76151.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW]
          Length = 880

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/816 (31%), Positives = 399/816 (48%), Gaps = 73/816 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID  EI+I++L+++I GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDKNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPRLFNLKEIIEAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSW 415

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F           +         A   
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQED 535

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   KE D ++  L A+T D IL  S+ G+
Sbjct: 536 VVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGR 595

Query: 572 AYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +
Sbjct: 596 LYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKI 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +E       G   L +  E+++  V    G + + +     +++ F+ + +  M R  
Sbjct: 656 ALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLA 715

Query: 685 KGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGR 717
            GVR                               D  I  V+   + +G    + +   
Sbjct: 716 TGVRGIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEGAILTATQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK +++
Sbjct: 776 GYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V      +L  +  G     + SE    +R  K  + +       K+    
Sbjct: 753 NIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 812

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V   D + ++ +   L+   + ++  + R  +GVRL    D      +
Sbjct: 813 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSL 861


>gi|329770364|ref|ZP_08261746.1| A subunit protein [Gemella sanguinis M325]
 gi|328836487|gb|EGF86147.1| A subunit protein [Gemella sanguinis M325]
          Length = 814

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/761 (32%), Positives = 413/761 (54%), Gaps = 29/761 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              + N+   ++   +E  +L Y++S I  RA+PD+RDG KPVHRRI++A +++GL +  
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSA +VGEV+ K HPHGD + Y ++VRLAQ F  RYP++ GQGNFG+IDGD AAA R
Sbjct: 62  PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +L+ +++D VD +D Y+    EP V PS+ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEARMSKIASEMLRDINKDTVDMQDNYDGTKQEPKVLPSRIPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL DN EI+I +L+  I GPDFPTG  ++  R  IV++Y  GRG  
Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMTKIKGPDFPTGAYLL-GRSGIVKAYTTGRGSV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R +  +E++  G   I++TEIPYQV K++L+EKIAEL   K+I  + D+RDES     
Sbjct: 241 IMRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGITDLRDESNLKGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R ++ ++++ +++ L+ ++  F +NM  L    VP+++ L  +L  +L H++E
Sbjct: 301 RIVIELRRDVNSNVILNNLYKLTPLQGSFGVNMIALVD-GVPKLLNLKEVLYYYLEHQKE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQ 427
           V+ RR+ F +     R  IL+GL IA  NID II++IR     +       + FSL+E Q
Sbjct: 360 VVVRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKSGLINEFSLSEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E   L+   E ++ +L   ++    +  E+ EVKE F 
Sbjct: 420 AQAILDMRLQRLTGLERDKIEEEYKKLMELIEDLEDILAKPERVLEIVKEELLEVKEKFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                 +RR+   E          + +IEKE I + +S+  +I+ L + +          
Sbjct: 480 D-----KRRSVIIEGQVD--QIENEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRGGRG 532

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           ++ +   + D++   L   T D IL  +  GK YTL    +       +   I  L+++ 
Sbjct: 533 VNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLEIE 592

Query: 598 HNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             + + +        +    L+  +  G     +  +  +  +KGK  LK+   + +  V
Sbjct: 593 KEEKVNSIIAISDLQEEGTSLMFSTRFGIVKKSKLGDYASILKKGKIALKLDEGDSLIDV 652

Query: 654 -VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
                   + +V  N + +  + +++ +M R  +GV+  +        +    + E    
Sbjct: 653 QRITDEQDIMIVTANGQAIRINAEKVRQMGRVSRGVKGITLSPDDYV-IGMEVVDESKKI 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        +        +  RGG G  V K   ++GK ++
Sbjct: 712 LTVTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVA 752



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 6/178 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
               AL   EGDSL           I++++ +G+A  + A  +         +   I L+
Sbjct: 636 KGKIALKLDEGDSLIDVQRITDEQDIMIVTANGQAIRINAEKVRQMGRVSRGV-KGITLS 694

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKV-SSEEKMKLVV 654
            +  ++   V D + K+L V+  G   I + +E     R GK     KV     K+  V 
Sbjct: 695 PDDYVIGMEVVDESKKILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVAVK 754

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            V+G + + ++ +   ++   +  I  + R   GV++ +  D      +     E + 
Sbjct: 755 SVSGNEDLMIMTDQGIIIRIDVSAISTLGRTATGVKVINLVDDQKVATVTLAAKEEIY 812


>gi|148993829|ref|ZP_01823231.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|149007122|ref|ZP_01830791.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74]
 gi|168489047|ref|ZP_02713246.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195]
 gi|169833929|ref|YP_001694651.1| DNA gyrase subunit A [Streptococcus pneumoniae Hungary19A-6]
 gi|225859001|ref|YP_002740511.1| DNA gyrase subunit A [Streptococcus pneumoniae 70585]
 gi|307127192|ref|YP_003879223.1| DNA gyrase subunit A [Streptococcus pneumoniae 670-6B]
 gi|73916162|gb|AAZ92949.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916164|gb|AAZ92950.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916166|gb|AAZ92951.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916168|gb|AAZ92952.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147761426|gb|EDK68392.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74]
 gi|147927654|gb|EDK78679.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|168996431|gb|ACA37043.1| DNA gyrase, A subunit [Streptococcus pneumoniae Hungary19A-6]
 gi|183572398|gb|EDT92926.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195]
 gi|225720597|gb|ACO16451.1| DNA gyrase, A subunit [Streptococcus pneumoniae 70585]
 gi|306484254|gb|ADM91123.1| DNA gyrase, A subunit [Streptococcus pneumoniae 670-6B]
 gi|332073556|gb|EGI84035.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17570]
 gi|332074551|gb|EGI85025.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17545]
 gi|332203068|gb|EGJ17136.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA47901]
          Length = 822

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|329123315|ref|ZP_08251881.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           aegyptius ATCC 11116]
 gi|327471411|gb|EGF16861.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           aegyptius ATCC 11116]
          Length = 880

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/816 (31%), Positives = 400/816 (49%), Gaps = 73/816 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHNDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F           +         A   
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQED 535

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   KE D ++  L A+T D IL  S+ G+
Sbjct: 536 VVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGR 595

Query: 572 AYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +
Sbjct: 596 LYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKI 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +E       G   L +  E+++  V    G + + +     +++ F+ + +  M R  
Sbjct: 656 ALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENAVRAMGRLA 715

Query: 685 KGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGR 717
            GVR                               D  I  V+   + +G    + +   
Sbjct: 716 TGVRGIKLALTNDISDDESAVEIEEISDDNAEASLDLNIDKVVSLVVPKGEGAILTATQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK +++
Sbjct: 776 GYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V      +L  +  G     + SE    +R  K  + +       K+    
Sbjct: 753 NIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 812

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V   D + ++ +   L+   + ++  + R  +GVRL    D      +
Sbjct: 813 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSL 861


>gi|160946609|ref|ZP_02093812.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270]
 gi|158446993|gb|EDP23988.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270]
          Length = 809

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/756 (33%), Positives = 395/756 (52%), Gaps = 14/756 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++    +  N+  V +   +++ YL YA+S I  RA+PD+RDG KPVHRRII+AM  +G
Sbjct: 1   MADIENKM--NIVDVDIEKEMKKSYLEYAMSVIVARALPDVRDGLKPVHRRIIYAMQGLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     +KKS+R+VGEV+GK HPHGD ++YD+ VRLAQ F  RYPL+ GQGNFG IDGD 
Sbjct: 59  LLPDKPYKKSSRLVGEVMGKYHPHGDSAIYDATVRLAQDFNLRYPLVDGQGNFGTIDGDG 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L+ +++D VDF   Y+E + EPVV PSKFPNLL NG +GIAV
Sbjct: 119 AAAPRYTEVRMQKLALEMLRDINKDTVDFAPNYDENEKEPVVLPSKFPNLLVNGAAGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+ +A    IDN +IS+++L++++ GPDFPTG  I    E I ++Y  
Sbjct: 179 GMATNMPPHNLNEVIDATCEYIDNFDISVDELMKFVKGPDFPTGANI-MGLEGIKQAYHT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA   +EE       I+VTEIPYQV K+ LI KI ELI  KRI  + D+RDES
Sbjct: 238 GRGKITVRAVANIEEHN-NKTRIIVTEIPYQVNKTNLIMKIVELIKDKRIEGISDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  +P++++ +++  + M+T F +    L     P+V+ L  ++  ++
Sbjct: 297 NMKGIRIVIELKRDANPNIILNNLYKHTQMQTTFGVINLALV-NGEPKVLNLKELIGHYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-KPKPVMVSRFSLT 424
            H+R+V+ RR  F ++  + R  I++GLL A  +IDEII IIR      +  ++ RF  T
Sbjct: 356 EHQRDVITRRCRFELKKAEDRAHIVEGLLKAIDHIDEIIKIIRASYSDAQEKLMERFGFT 415

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q ++IL +RLR L+ LE  +++ E ++L+ E  ++  +L + +   N I  E+ E+KE
Sbjct: 416 KIQAESILEMRLRRLQGLEREKLQDEYNSLIKEIARLKEILGNERLILNIIKEELIEIKE 475

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            F        +                  +   +   +        +        + AL 
Sbjct: 476 KFGDDRRTEIKPNFDEIEIEELIKEEDVVITLTKQGYIKRIPSDTYKVQNRGGKGVVALT 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDI 602
            KE D +       T   IL  +  G+ Y L A  +  G+   +      L++L H + +
Sbjct: 536 TKEDDYVDSLFVTSTHSLILFFTNKGRVYKLKAYEIPEGKRQAKGQNIINLLELMHGEKV 595

Query: 603 VTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-G 658
                         L++ + KG           A  + G   + +  ++++  V   T  
Sbjct: 596 NAVIPVKDAGSDEYLIMATKKGTIKRTSVELFKAIRKVGMKAINLVDDDELIQVRVSTVE 655

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D   +V +    + F +  I E+ R G+GVR            +     EG   +  +  
Sbjct: 656 DSAMLVTKKGLAIKFELSDIREIGRTGQGVRGIKLDKDDEVVSMNLA-SEGKHLLVISEY 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +        +  RGG G    K   ++G  +SS
Sbjct: 715 GYGKRTLASNYKVQNRGGKGVKTYKVTDKTGFVVSS 750


>gi|322376501|ref|ZP_08050994.1| DNA gyrase, A subunit [Streptococcus sp. M334]
 gi|321282308|gb|EFX59315.1| DNA gyrase, A subunit [Streptococcus sp. M334]
          Length = 821

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 399/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKAGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----QRRTEL--MVGEVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F    +  MSRG  GV+  + ++G         I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFKQSVVRGMSRGATGVKGVNLREGDTVVGASV-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGSLSG 750



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 5/128 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK---TFLKVSSEEKM 650
           ++L     +V A V     ++L+++ KG       +E     R GK   T         +
Sbjct: 689 VNLREGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGSL 748

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             ++ V GD  + ++ +   ++  ++  I +  R   GV++                 E 
Sbjct: 749 SGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVTAEK 808

Query: 709 LTWIDSAG 716
                   
Sbjct: 809 EEVGTENE 816


>gi|163756042|ref|ZP_02163158.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Kordia algicida OT-1]
 gi|161323916|gb|EDP95249.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Kordia algicida OT-1]
          Length = 849

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/754 (30%), Positives = 390/754 (51%), Gaps = 19/754 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGVRSSSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++++ +L  +D+D VD    +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISDDMLADIDKDTVDHSLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   A IDN +I I++L++++  PDFPTGG I+   + + E+++ GRG   +R 
Sbjct: 185 NLSEVVDGIHAYIDNNDIEIDELIQHVKAPDFPTGG-IIYGYDGVREAFKTGRGRIVMRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  V E  +G  CI+VTEIPYQV K+ +I+K A+LI  K+I  +  IRDES      +++
Sbjct: 244 KA-VMEEVQGRECIIVTEIPYQVNKADMIKKTADLINDKKIDGISSIRDESDRKGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L     PQ++ L  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNKLYKYTALQSSFSVNNIALVH-GRPQLLNLKDMIHYFVEHRHEVVTR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IAIIR        +  ++ RF LTE Q  AI
Sbjct: 362 RTQYELKKAEERAHILEGLIIASDNIDEVIAIIRGSQNAEDARNNLIKRFELTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D+++   E    +L +  ++ N I  E+  +K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDDIMKSIEDYRDILANKSRRMNIIKEELEVIKDKYGDERR 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                              +  +       +  ++    +      V       +  D L
Sbjct: 482 SMIEYAGGDVSIEDLIPDEKVVITISHAGYIKRTSLTEYKRQNRGGVGQKGSATRNEDFL 541

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV-- 607
           +          +L  +  GK + +    +  G    +  AIQ LI++  +  +       
Sbjct: 542 EHLFVGTNHQYMLFFTQQGKCFWMRVYEIPEGSKTSKGRAIQNLINIEKDDKVKAFICTQ 601

Query: 608 ------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                 Y +   +++ + KG        +       G   + +   +++      TG+  
Sbjct: 602 NLKDEEYINNHYVIMATKKGQVKKTPLEQYSRPRTNGINAITIKDGDELLEAKLTTGNSQ 661

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRS 718
           V +  ++ K + F  ++   M R   GVR     D     V    + +     +  +   
Sbjct: 662 VMLAVKSGKAIRFEEEKTRPMGRNASGVRGIRLADDNDEVVGMVAVNDMESNILVVSENG 721

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +     +  RGG G        ++G+ ++
Sbjct: 722 YGKRSSLEDYRITNRGGKGVKTISVTEKTGQLVA 755



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 100/323 (30%), Gaps = 16/323 (4%)

Query: 391 KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
           + ++I   +   I      E K +         +  + +  L           +Y +   
Sbjct: 500 EKVVITISHAGYIKRTSLTEYKRQNRGGVGQKGSATRNEDFLEHLFVG--TNHQYMLFFT 557

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
                      +    S   +   I   +  +++       +  +     E        +
Sbjct: 558 QQGKCFWMRVYEIPEGSKTSKGRAIQN-LINIEKDDKVKAFICTQNLKDEEYINNHYVIM 616

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                  +   V  +        +++   ++A+  K+GD L  A       +++L    G
Sbjct: 617 -----ATKKGQVKKTPLEQYSRPRTN--GINAITIKDGDELLEAKLTTGNSQVMLAVKSG 669

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEES 629
           KA             +   ++ +   + N ++V     +     +LVVS  G        
Sbjct: 670 KAIRFEEEKTRPMGRNASGVRGIRLADDNDEVVGMVAVNDMESNILVVSENGYGKRSSLE 729

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG- 684
           +     R GK    +S  EK   +  +  VT +  + ++ ++   +  ++  +  M R  
Sbjct: 730 DYRITNRGGKGVKTISVTEKTGQLVAIKNVTDEDGLMIINKSGIAIRMAVADLRVMGRAT 789

Query: 685 KGVRLQSYKDGGISDVICFKICE 707
           +GVRL + K       +     E
Sbjct: 790 QGVRLINIKGKDSIAAVAKVRNE 812


>gi|15903142|ref|NP_358692.1| DNA gyrase subunit A [Streptococcus pneumoniae R6]
 gi|116516676|ref|YP_816548.1| DNA gyrase subunit A [Streptococcus pneumoniae D39]
 gi|168486542|ref|ZP_02711050.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00]
 gi|30913085|sp|Q8DPM2|GYRA_STRR6 RecName: Full=DNA gyrase subunit A
 gi|15458723|gb|AAK99902.1| DNA gyrase subunit A [Streptococcus pneumoniae R6]
 gi|73916134|gb|AAZ92935.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916208|gb|AAZ92972.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916220|gb|AAZ92978.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|116077252|gb|ABJ54972.1| DNA gyrase, A subunit [Streptococcus pneumoniae D39]
 gi|183570436|gb|EDT90964.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00]
          Length = 822

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|301170002|emb|CBW29606.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae 10810]
          Length = 880

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/816 (31%), Positives = 400/816 (49%), Gaps = 73/816 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPRLFNLKEIIEAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F           +         A   
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQED 535

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   KE D ++  L A+T D IL  S+ G+
Sbjct: 536 VVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGR 595

Query: 572 AYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +
Sbjct: 596 LYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKI 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +E       G   L +  E+++  V    G + + +     +++ F+ + +  M R  
Sbjct: 656 ALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENAVRAMGRLA 715

Query: 685 KGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGR 717
            GVR                               D  I  V+   + +G    + +   
Sbjct: 716 TGVRGIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEGAILTATQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK +++
Sbjct: 776 GYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V      +L  +  G     + SE    +R  K  + +       K+    
Sbjct: 753 NIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 812

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V   D + ++ +   L+   + ++  + R  +GVRL    D      +
Sbjct: 813 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSL 861


>gi|182678910|ref|YP_001833056.1| DNA topoisomerase IV subunit A [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634793|gb|ACB95567.1| DNA topoisomerase IV, A subunit [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 752

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/733 (56%), Positives = 556/733 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKK A+IV
Sbjct: 20  VNLREALEERYLAYALSTITGRALPDARDGLKPVHRRILYGMQILRLDPGTAFKKCAKIV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGNIDGDSAAAYRYTEARMT++
Sbjct: 80  GDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDSAAAYRYTEARMTEI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L+G+DEDA+DFR+ Y+ +  EP+V P+  PNLLANG  GIAVGMATSIP HN+ E+
Sbjct: 140 ARLLLEGIDEDAIDFRENYSGDQKEPIVLPAALPNLLANGAQGIAVGMATSIPPHNLSEL 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+AAL LI + + + ++LL ++ GPDFPTGGI+V+S ESI E+YR GRG FR+RARW  E
Sbjct: 200 CDAALYLISHRDATSDQLLTFVRGPDFPTGGILVDSPESIAETYRTGRGAFRLRARWERE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E  RG++ IVVTEIPY VQKSRLIEK+AEL+  K++PL+ DIRDESAEDVRIV+ PK+R+
Sbjct: 260 EGTRGTYVIVVTEIPYMVQKSRLIEKLAELLNDKKLPLVGDIRDESAEDVRIVIEPKSRA 319

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           ++P+LLMES+F L+++ETRFP+NMNVL  G VP+V+ LD  L++WL HRREVL RRS  R
Sbjct: 320 VEPELLMESLFKLTELETRFPVNMNVLVDGVVPRVVSLDEALRQWLDHRREVLLRRSRHR 379

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           +  I+RR+E+L G+LI +LN+DE+I IIR ED+PK V+ + F+L++ Q + IL+ RLRSL
Sbjct: 380 LAEIERRLEVLAGMLIVFLNLDEVIRIIREEDEPKEVLKATFTLSDIQANYILDTRLRSL 439

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
           R+LEE +++ E +NL  EK +I+ LL S  +QW +I+ +IR++K+ + ++T LGRRRTTF
Sbjct: 440 RRLEEMELRREYENLEKEKSEIEGLLASESKQWKEISSQIRDLKKRYGEATPLGRRRTTF 499

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
             V       +  A+IE+EP+T+V+S +GWIR+LK H  DLS L FK  D L     A T
Sbjct: 500 GNVPDVGAVDVATALIEREPVTIVVSEKGWIRALKGHVADLSTLTFKGDDQLAFQFFAET 559

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           T +ILL ++DGK +TL A  L  GRGHGE ++L++DL   +++ +   Y++  KLL+ +S
Sbjct: 560 TSKILLFASDGKVFTLEASKLPGGRGHGEPLRLMVDLGEGEEVTSIIPYETGAKLLLTAS 619

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
            G  FIV + ++I  TRKGK  L   +  K+  +V   GDH+A++GENRKLLIF + QI 
Sbjct: 620 DGRGFIVGQDDLIGTTRKGKQVLNCDAPAKLSHIVPAAGDHLAIIGENRKLLIFPLVQIA 679

Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           EM+RGKGVRLQ YKDGG+SD     I  GL+W D+AGRS++ ++ DL  W+G+RG  G L
Sbjct: 680 EMTRGKGVRLQKYKDGGVSDAKVIFIDAGLSWQDAAGRSFHLAKADLADWIGQRGEAGRL 739

Query: 740 VPKGFPRSGKFLS 752
            P+GFP++ +F  
Sbjct: 740 PPRGFPKNNRFTG 752


>gi|303326107|ref|ZP_07356550.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302864023|gb|EFL86954.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 857

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/768 (32%), Positives = 417/768 (54%), Gaps = 32/768 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +       +   ++   L + YL Y+LS I  RAIPD RDG KPVHRRI+ A  E+ 
Sbjct: 1   MSEAQDGQHPQI---NIEKELRQSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELA 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            ++    KKSARIVG+VIGK HPHGD +VYD+LVRLAQ F  R PL+ GQGNFG+IDGDS
Sbjct: 58  NNYNRPHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQEFSMRDPLVDGQGNFGSIDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A+  L  +D++ VDFR  Y+    EP V P+K PNLL NG+SGIAV
Sbjct: 118 AAAMRYTEVRMSRLAQEFLGDLDKNTVDFRPNYDNTLQEPSVMPTKVPNLLLNGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+C+A   L+DNP+ S++ L+EY+ GPDFPT G +   +  + ++Y  
Sbjct: 178 GMATNIPPHNLGELCDALQLLLDNPQCSVDDLMEYVKGPDFPTAGFVYAGK-GLYDAYHT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++R R  +EE  +G   +V+ EIP+ + KS L+EKIA L+  ++I  + D+RDES
Sbjct: 237 GRGTVKMRGRVEIEERKKGLQSVVIREIPFGLNKSSLVEKIAALVNDRKIDGIADLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R + PD+++ +++  + +E+ F +NM  +   R P ++ L   L  ++
Sbjct: 297 DRKGIRIVIDLKRGVIPDIVVNALYKFTPLESSFGINMLAVVDNR-PVLLTLKSALSCFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            HRREV+ RR+ + ++  + R  IL+GL IA  +ID+++A+IR    P+      ++ F 
Sbjct: 356 DHRREVVIRRTRYDLEKAEARAHILEGLRIAIDHIDQVVALIRASANPEEARQGLMATFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  L+  ++ +E  +LL + E   S+L++ +   +++  EIRE+
Sbjct: 416 LSEIQARAILDMRLQRLTGLQREELLAEYKDLLQKIEFYKSVLDNSEVLRSEMKREIREI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +E F        RRT     + A      + +I  + + + +S RG+++          K
Sbjct: 476 RETFVTP-----RRTEVL--TEALGGIDIEDLIPDDEVVITLSRRGYMKRTNLENYQQQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                ++ALH  + D ++  L       + L +  G+ + L    +  G    +   I  
Sbjct: 529 RGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVPEGSRTAKGVHINN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + + T      +      L V+ +G       S      + G   + +  +++
Sbjct: 589 LLPLEEGEWVTTVLALREFAEDKYFLFVTRRGMVKRSSASLYARCRKTGLMAVGLREDDE 648

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKI 705
           + +V  +   +H+ +   +   + FS   I  M R   GV+  + +  D  ++ V+   +
Sbjct: 649 LVVVRPIREDNHIVLATADGFAIRFSCGDIRPMGRVATGVKGIALRRQDSVVAGVVLKDV 708

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    +  +   Y +     L  L  RGG G +  K   ++G  + +
Sbjct: 709 DQTTEIMSISANGYGKRTRVDLYRLQSRGGKGIINFKVTAKTGPVVGA 756



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 70/200 (35%), Gaps = 12/200 (6%)

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            V  S+       +     L A+  +E D L +       + I+L + DG A     G++
Sbjct: 621 MVKRSSASLYARCRKT--GLMAVGLREDDELVVVRPIREDNHIVLATADGFAIRFSCGDI 678

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
                    +   I L     +V   V    D T +++ +S+ G             +R 
Sbjct: 679 RPMGRVATGV-KGIALRRQDSVVAGVVLKDVDQTTEIMSISANGYGKRTRVDLYRLQSRG 737

Query: 638 GKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
           GK  +      K   +   + V  +  + ++    K++   +D++    R   GV L   
Sbjct: 738 GKGIINFKVTAKTGPVVGAMPVRDNDGLILLTSANKIVRIGVDEVRSKGRATMGVMLVRL 797

Query: 693 KDGGISDVICFKICEGLTWI 712
            +G    V   ++ EG   +
Sbjct: 798 DEGARV-VGFDRVDEGGQIV 816


>gi|15901081|ref|NP_345685.1| DNA gyrase subunit A [Streptococcus pneumoniae TIGR4]
 gi|111657851|ref|ZP_01408566.1| hypothetical protein SpneT_02000974 [Streptococcus pneumoniae
           TIGR4]
 gi|149012271|ref|ZP_01833340.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|168484884|ref|ZP_02709829.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00]
 gi|225860947|ref|YP_002742456.1| DNA gyrase subunit A [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649922|ref|ZP_04524174.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974]
 gi|237822529|ref|ZP_04598374.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230359|ref|ZP_06964040.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254316|ref|ZP_06977902.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|17377446|sp|P72524|GYRA_STRPN RecName: Full=DNA gyrase subunit A
 gi|14972699|gb|AAK75325.1| DNA gyrase, A subunit [Streptococcus pneumoniae TIGR4]
 gi|73916148|gb|AAZ92942.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916154|gb|AAZ92945.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916174|gb|AAZ92955.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916178|gb|AAZ92957.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916180|gb|AAZ92958.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916212|gb|AAZ92974.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916218|gb|AAZ92977.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147763597|gb|EDK70532.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|172041968|gb|EDT50014.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00]
 gi|225728315|gb|ACO24166.1| DNA gyrase, A subunit [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389455|gb|EGE87800.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA04375]
 gi|332201683|gb|EGJ15753.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA47368]
          Length = 822

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|73916122|gb|AAZ92929.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L   ++       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYDIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGFLAG 750


>gi|260576309|ref|ZP_05844301.1| DNA topoisomerase IV, A subunit [Rhodobacter sp. SW2]
 gi|259021577|gb|EEW24881.1| DNA topoisomerase IV, A subunit [Rhodobacter sp. SW2]
          Length = 767

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/768 (49%), Positives = 517/768 (67%), Gaps = 29/768 (3%)

Query: 9   SNTLVEENVKAV----SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +    +  ++       LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E+
Sbjct: 2   TKAPQDPKIEPQEHSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMREL 61

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L   +AF+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD
Sbjct: 62  KLSPTSAFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGD 121

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           + AA RYTEAR+T +AE +++G+ E+AVDFR  Y+    EPVV P+ FP+LLANG+SGIA
Sbjct: 122 NPAASRYTEARLTAIAEALMEGLAENAVDFRPNYDGTLEEPVVMPAAFPHLLANGSSGIA 181

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  LALI +P++    L++ I GPDFPTGG+IVE R SI++SYR
Sbjct: 182 VGMATNIPPHNLHELIDGCLALIKHPDLPDAALVDLIPGPDFPTGGVIVEPRASILDSYR 241

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG FR+RARW VE++GRG W IVVTEIPYQVQKS+LIE++AELI  K+ PLL D+RDE
Sbjct: 242 TGRGSFRLRARWAVEDLGRGQWQIVVTEIPYQVQKSKLIERLAELIQTKKTPLLADVRDE 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  DVR++L P+ R++DPD+LM ++F  SD+E RF LNMNVL  GR P+V  L  +L+ +
Sbjct: 302 STADVRLILEPRVRTVDPDMLMGTLFRNSDLELRFSLNMNVLIDGRTPKVCSLREVLRAF 361

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI--------------------- 403
           L H+REVL RRS  R++ ID R+EIL+G +I +LN+D +                     
Sbjct: 362 LDHKREVLQRRSRHRLEKIDHRLEILEGFIITFLNLDRVIDIIRYDADPKRALMAEDWGK 421

Query: 404 -IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                 +E    P       LTE Q +AILN+RLRSLR+LEE ++ +E D L+ E+  ++
Sbjct: 422 KHRRATSEKDYVPPAPGEGELTEVQAEAILNMRLRSLRRLEELELIAERDALMVERAGLE 481

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            LL S   QW +I  ++ EV++ F K++  G RR+TF E   A +    +AMIE+EPITV
Sbjct: 482 DLLASDALQWKRIGKDLAEVQKTFGKASKGGARRSTFAEAGEA-EEVPYEAMIEREPITV 540

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           + S  GWIR++K H    S   FK+GD  +   HA TTDRI+L+ ++G+ YTL   NL  
Sbjct: 541 ICSKMGWIRAMKGHVALDSEQKFKDGDEGRFLFHAETTDRIILIGSNGRVYTLLGANLPG 600

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           GRG GE ++L++DL ++ +I+   ++    KLL+ S+ G+ F++   E++A T+ GK  L
Sbjct: 601 GRGMGEPVRLMVDLPNDAEIIDLMIHRPGLKLLIASTAGDGFVLPSDEVVAQTKAGKQVL 660

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVIC 702
            V    K  L   V GD VAVVG+NRK+L+F +  +PEM+RGKGVRLQ YKDGG++D   
Sbjct: 661 VVREGVKTALCRPVKGDAVAVVGDNRKMLVFPLADLPEMARGKGVRLQKYKDGGLADATT 720

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           F + +GL+W D AGR   R+E DL  W   R   G + P+GFPR  +F
Sbjct: 721 FVLAQGLSWKDPAGR--TRTETDLAEWQAARATAGRMAPRGFPRDNRF 766


>gi|92117770|ref|YP_577499.1| DNA topoisomerase IV subunit A [Nitrobacter hamburgensis X14]
 gi|91800664|gb|ABE63039.1| DNA topoisomerase IV subunit A [Nitrobacter hamburgensis X14]
          Length = 749

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/735 (56%), Positives = 540/735 (73%), Gaps = 1/735 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G+AFKKS
Sbjct: 12  EIHDVQLRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGSAFKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEAR
Sbjct: 72  AKIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNIDGDNPAAYRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L+G+DEDAV+FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN
Sbjct: 132 MTDVARLLLEGIDEDAVEFRPNYDGQTREPVVLPGGFPNLLANGAQGIAVGMATAIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LID P+ + + LL ++ GPDFPTGGII++S+ESI E+Y  GRG FR RA+
Sbjct: 192 AAELCDAALHLIDKPDATSKSLLRWVKGPDFPTGGIIIDSKESITEAYMTGRGAFRTRAK 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE  RG+W IVVTEIP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAED+R+V+ P
Sbjct: 252 WNQEEGARGTWVIVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDIRVVIEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++DP+L+MES+F L+++E+R  LN+NVL  G++P+V+ L   L+EWL H R+VL RR
Sbjct: 312 KSRNVDPELVMESLFKLTELESRISLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S++R   I+ R+E+L G LIAYLNID++I IIR ED+PKP ++  F LTE Q +AILN+R
Sbjct: 372 SAYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPALMKAFKLTEVQAEAILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE +I++E  NL AE + I+++L S  +QW ++A ++R V+++F   T LG+R
Sbjct: 432 LRSLRKLEEMEIRTEDKNLRAELKGINAVLGSEARQWEKVAEQVRTVRDMFGPKTPLGKR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +    D A L+++++E+EP+TVV+S++GW+R+LK H  DLS+L FK  D L  A 
Sbjct: 492 RTVFADAPEHDLAALEESLVEREPVTVVLSDKGWVRTLKGHVEDLSSLSFKTNDKLGFAF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A TT ++LL +T+GK Y+L    L  GRGHGE I+L ID+  +  IV+ FV     K L
Sbjct: 552 FAETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDMEQDAAIVSLFVNTGGRKFL 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           + S +G  FIV E + +  TRKGK  L V    + K +V V GD VAV+G N K++IF +
Sbjct: 612 IASHEGQGFIVNEDDCVGTTRKGKQVLNVEMPNEAKAIVTVAGDQVAVIGTNHKMVIFPL 671

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           DQ+PEM+RG+GVRLQ YKD G+SDV  F    GLTW DSAGR       DL  W G R  
Sbjct: 672 DQVPEMARGRGVRLQKYKDAGLSDVAVFDSKAGLTWKDSAGREQGLRWKDLSDWRGNRAD 731

Query: 736 VGSLVPKGFPRSGKF 750
            G L   G P+S +F
Sbjct: 732 AGRLAH-GLPKSNRF 745


>gi|308234054|ref|ZP_07664791.1| DNA gyrase, A subunit [Atopobium vaginae DSM 15829]
 gi|328943451|ref|ZP_08240916.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae
           DSM 15829]
 gi|327491420|gb|EGF23194.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae
           DSM 15829]
          Length = 945

 Score =  663 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/764 (31%), Positives = 395/764 (51%), Gaps = 29/764 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + + +    +K   L   ++  +L Y++S I  RA+PD+RDG KPVHRRI++AM+E  + 
Sbjct: 88  DLSDIHGGALKPTDLSSEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIV 147

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                KKSA  VGEV+GK HPHGD S+YD++VR+AQ F  R PL+ G GNFG+IDGD  A
Sbjct: 148 PTRPHKKSAWTVGEVMGKYHPHGDSSIYDAMVRMAQEFSMRLPLVDGHGNFGSIDGDPPA 207

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+R+T  A  +L+ +D++ VD +  Y+E   EP V P++FPNLL NG++GIAVGM
Sbjct: 208 AMRYTESRLTHAAMQMLRDLDKETVDLQPNYDESLQEPSVLPARFPNLLVNGSNGIAVGM 267

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN+ E+  A   +IDNP+ ++E L++ + GPDFPTGG I+   + I ++Y  GR
Sbjct: 268 ATNVPPHNLAEVSRAVCMMIDNPDATVEDLMQVLPGPDFPTGG-IIMGTDGIRDAYTTGR 326

Query: 248 GGFRVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           G   +R++  VE VGR G   +V+TEIPYQV K  L E+IA+ +  KRI  + D+RDES 
Sbjct: 327 GSITIRSKVHVENVGRGGRQRLVITEIPYQVNKGLLQERIAQQVNEKRIEGISDMRDESN 386

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P +++ +++  + ++  F +    L    VP+ + L  ++  ++ 
Sbjct: 387 RKGMRIVIDLKSGAVPQVVLNNLYKRTQLQVSFGVIDLALVD-GVPRTLTLREMIYYYIE 445

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FSL 423
           H+++++ RR+ F +    +RV IL+GLLIA  NIDE++ IIR+    +         F +
Sbjct: 446 HQKDIVTRRTQFDLDKALKRVHILEGLLIAVDNIDEVVHIIRSSHDDQEAKQRMNERFGI 505

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            + Q +AIL +RLR L  L   ++ +++  L    E    LL   ++    I  E+ E+ 
Sbjct: 506 DDIQGEAILQMRLRRLTGLAREELAAQIAELYKSIEYYRDLLAHPQKLLEVIKEELTEIS 565

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
             FS      +RRT     +   +    + +I +E + + +++  +I+          K 
Sbjct: 566 TRFSD-----KRRTQI--SALGVQNLDIEDLIAEEDMVITVTHASYIKRLPVATYKSQKR 618

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLL 593
               +  L  K+ D ++    A T D +L  +  GK Y L    L  G  H    A+  +
Sbjct: 619 GGKGVQGLSLKDNDFVENMFVASTHDYVLFFTNKGKVYRLKVHELPVGSRHARGSALINV 678

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + L+  +          + +   L+  +  G       S+   + R G   + +   +++
Sbjct: 679 LPLSEGEYPTAVITTRDFPAEEHLMFATKSGMVKKTAMSDYDKSRRDGLIAINLKDGDEL 738

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
             V +V   ++V +     K ++F    I    RG  GVR  + KDG     +     +G
Sbjct: 739 VNVRRVKESEYVILCSSAGKAIMFEESDIRPTGRGTSGVRGITLKDGATMLGMEISNGKG 798

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +      Y +        L KRGG+G        + GK  +
Sbjct: 799 D-LLVVTEHGYGKRTPVSEYPLQKRGGLGVNTIAMTQKKGKLSA 841



 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 8/183 (4%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                   KS    L A++ K+GD L        ++ ++L S+ GKA      ++    G
Sbjct: 713 KTAMSDYDKSRRDGLIAINLKDGDELVNVRRVKESEYVILCSSAGKAIMFEESDIRP-TG 771

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK----TF 641
            G +    I L     ++   + +    LLVV+  G       SE     R G       
Sbjct: 772 RGTSGVRGITLKDGATMLGMEISNGKGDLLVVTEHGYGKRTPVSEYPLQKRGGLGVNTIA 831

Query: 642 LKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD 699
           +      K+     V   H + +V E   ++      I  +SR  +GV++ +  +     
Sbjct: 832 MTQKKG-KLSACRVVGPQHELMIVSEEGVMIRVQSQDISLLSRATQGVKIMNLAESDSVS 890

Query: 700 VIC 702
            + 
Sbjct: 891 ALA 893


>gi|260582929|ref|ZP_05850713.1| DNA gyrase, A subunit [Haemophilus influenzae NT127]
 gi|260094029|gb|EEW77933.1| DNA gyrase, A subunit [Haemophilus influenzae NT127]
          Length = 880

 Score =  663 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/816 (31%), Positives = 399/816 (48%), Gaps = 73/816 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSW 415

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ +VK  F           +         A   
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEDVKAQFGDDRLTEITAASGDIDLEDLIAQED 535

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   KE D ++  L A+T D IL  S+ G+
Sbjct: 536 VVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGR 595

Query: 572 AYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +
Sbjct: 596 LYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKI 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +E       G   L +  E+++  V    G + + +     +++ F+ + +  M R  
Sbjct: 656 ALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLA 715

Query: 685 KGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGR 717
            GVR                               D  I  V+   + +G    +     
Sbjct: 716 TGVRGIKLALTNDISDDESAVEIEEISDDNAEASLDLNIDKVVSLVVPKGEGAILTVTQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK +++
Sbjct: 776 GYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V      +L V+  G     + SE    +R  K  + +       K+    
Sbjct: 753 NIDKVVSLVVPKGEGAILTVTQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 812

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V   D + ++ +   L+   + ++  + R  +GVRL    D      +
Sbjct: 813 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSL 861


>gi|330718066|ref|ZP_08312666.1| DNA gyrase subunit A [Leuconostoc fallax KCTC 3537]
          Length = 851

 Score =  663 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/760 (30%), Positives = 386/760 (50%), Gaps = 19/760 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  N +    +K  +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MSERNDM---RIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  R+ LI G GNFG++DGDS
Sbjct: 58  NTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRHMLIDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++++A  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG SGIAV
Sbjct: 118 PAAMRYTEARLSKIAMEMIRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGASGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP+HN+ E+  A   L+DNP+++  +L+  + GPDFPTG  IV  +  I  +Y  
Sbjct: 178 GMATSIPTHNLGEVISALHMLMDNPDVTTSELMTALPGPDFPTGA-IVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +E+   G   I+VTE+PY V K+RLIE+++EL+  KRI  +  IRDES
Sbjct: 237 GRGTVTVRAKVDIEQTKSGREQIIVTELPYMVNKARLIERVSELVRDKRIEGITGIRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V     R     +++ +++  + ++T F  NM  +     P+ + L  IL  +L
Sbjct: 297 DREGLRVSIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDH-GKPKTLNLKEILVAYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H+REV+ RR++F ++    R  IL+GL IA  +ID II+IIR+          ++  +S
Sbjct: 356 EHQREVIRRRTAFDLKKAQARAHILEGLRIALDHIDAIISIIRSSKTSDEAKGRLIESYS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +I+ E   L A    +  +L    +    I  E+ ++
Sbjct: 416 LSDKQAQAILDMRLVRLTGLERDKIEDEYRKLEALITDLKDILAHSARVDKIIYNELLDI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           ++ F        +      +   D    +  ++       +        ++       + 
Sbjct: 476 QQKFGDERRTELQVGDVTNIEDEDLIEEEDVIVTLTSNGYIKRVPTAEFKAQNRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            ++  + D ++  +   T + +L  +  GK Y +    +     H +   +  L++ +++
Sbjct: 536 GMNVHDDDVIEQMVSTSTHNALLFFTNKGKVYRMKGYEIPEYGRHAKGIPVVNLLNFDND 595

Query: 600 QDIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           + I T              L  V+  G        +       G   L +  ++++  V+
Sbjct: 596 EKIQTLISVSDQTAASESYLFFVTQLGVVKRTAVKDFSNIRTNGLKALTLHDDDEVLNVM 655

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G+  + +   +   + FS   +  M R   GVR    +D  I  +    +      +
Sbjct: 656 ITNGEQNIIIATHDGYSVSFSESDVRVMGRSAAGVRGIRLRDDDIV-IGADILNPKANVL 714

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +        +  RGG G        ++G  + 
Sbjct: 715 VITENGYGKQTAATEYPIKGRGGKGIKTANITAKNGSLVG 754



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 64/184 (34%), Gaps = 8/184 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL   + D +   +  +    I++ + DG + +    ++        A    
Sbjct: 634 NIRTNGLKALTLHDDDEVLNVMITNGEQNIIIATHDGYSVSFSESDVRVMGRSA-AGVRG 692

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L  +  ++ A + +    +LV++  G       +E     R GK      +   +   
Sbjct: 693 IRLRDDDIVIGADILNPKANVLVITENGYGKQTAATEYPIKGRGGKGIKTANITAKNG-S 751

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  +  V GD  + +      ++ F+ D + +  R   GVRL   +       +     E
Sbjct: 752 LVGMTIVDGDEDIMLTTNQGVMIRFTADSVSQTGRATLGVRLIRLEKETKVATLAKVDPE 811

Query: 708 GLTW 711
            L  
Sbjct: 812 TLDT 815


>gi|309388288|gb|ADO76168.1| DNA gyrase subunit A [Halanaerobium praevalens DSM 2228]
          Length = 864

 Score =  663 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/748 (32%), Positives = 387/748 (51%), Gaps = 14/748 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            VK + +   +   YL Y++S I  RA+PD+RDG KPVHRRI++A+ ++G+      KKS
Sbjct: 7   RVKKIDIDQEMRTSYLDYSMSVIVGRALPDVRDGLKPVHRRILYALDDLGMTHKKPHKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 67  ARIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYMLVDGHGNFGSIDGDSAAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+ +A  ++  + ++ VDF   ++E   EP V P++FPNLL NG+SGIAVGM+TSIP HN
Sbjct: 127 MSPIASEMMTDIKKETVDFVPNFDESLEEPEVLPARFPNLLVNGSSGIAVGMSTSIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LI+ PEI+ ++L+  I GPDFPTGG I   R SI ++Y+ GRG   VRA+
Sbjct: 187 LGEVIDGVIKLINKPEINTKELMGTIKGPDFPTGGQI-MGRGSIYKAYKNGRGKLTVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE++      I+V E+PYQV K+RLI+KIA+L+  +++  + DIRDES  D   ++  
Sbjct: 246 TRVEDLSTSRKQIIVDELPYQVNKARLIKKIADLVKNEKLEAISDIRDESDRDGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P +++  ++  S ++  F + M  L   + P+V+ L  IL+ +L H++EV+ RR
Sbjct: 306 LKREATPKVVLNQLYKHSRLQVTFSVIMIALVD-KEPKVLSLKQILEHYLEHQKEVVRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAIL 432
           + + +     R  IL+G  IA  NIDEI+ +I+N D+       ++  + L+E Q +AIL
Sbjct: 365 TQYDLDKALDRAHILEGYKIALANIDEIVEMIKNADQVDTARINLMENYKLSETQANAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+SL  LE  +I+SE  +L  +     S+L S ++    I  EI  +K  ++     
Sbjct: 425 RMRLQSLTGLERDKIESEYTDLQEQITYYRSILASEEKLLEIIKEEILAIKAKYNDERRT 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                             Q  +       +        RS +     +  +  KE D ++
Sbjct: 485 SIMNRATDLELEDLIEEEQIVVTMTNQGYIKRMPLDLYRSQRRGGKGVIGISTKEEDFVE 544

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
                 T  + L  +  G+ Y L    +     +  G AI  L++L   + I        
Sbjct: 545 NIFTTTTHYKFLFFTNQGRVYRLKGYQIPETGRQARGTAIINLLELEEGEKINAVIPIKE 604

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   L++ +  G        E       G   + +   +++  V  +     + +V  
Sbjct: 605 FPADAYLIMATKNGLIKKTALEEY-NTNYTGLIAINLRENDELIGVRVIEAKENIFLVTR 663

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           N K + FS   +  + R   GV+  + +       +      G   +      Y +    
Sbjct: 664 NAKAIHFSEADVRSVGRNSYGVKGINLETEDEVIDLGIDSA-GDELLVITENGYGKRTLI 722

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +  RGG G L      ++G+  ++
Sbjct: 723 SEYRVQNRGGKGILTANLTEKNGQLAAA 750



 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 2/127 (1%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S  +  ++ +  D +         D +L+++ +G                G+ I    
Sbjct: 680 RNSYGVKGINLETEDEVIDLGIDSAGDELLVITENGYGKRTLISEYRVQNRGGKGILTAN 739

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
               N  +  A + D + +++ ++  G    V  SEI    R   G   + V  E+++  
Sbjct: 740 LTEKNGQLAAARIVDDSLEMMAITQAGIIIRVAASEISTTGRNTMGVKIINVGEEDQVVS 799

Query: 653 VVKVTGD 659
           + ++  D
Sbjct: 800 LARINDD 806


>gi|294675703|ref|YP_003576318.1| DNA topoisomerase IV subunit A [Rhodobacter capsulatus SB 1003]
 gi|294474523|gb|ADE83911.1| DNA topoisomerase IV, A subunit [Rhodobacter capsulatus SB 1003]
          Length = 767

 Score =  663 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/755 (50%), Positives = 529/755 (70%), Gaps = 12/755 (1%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            +S+ +        A  L  A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E+
Sbjct: 15  TMSSDDETPTSATHAEPLSRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMREL 74

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGN+GNIDGD
Sbjct: 75  KLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAMRYPLVDGQGNYGNIDGD 134

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+   AE +L+G+ ED+VDFR  Y+   +EPVV P+ FPNLLANG SGIA
Sbjct: 135 GPAASRYTEARLASPAEALLEGLAEDSVDFRPNYDGTLTEPVVLPAAFPNLLANGASGIA 194

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++P HN+ E+ +  LA+I +P I   +L++ I GPDFPTGG+IVE + +I+E+YR
Sbjct: 195 VGMATNVPPHNLDELVDGCLAMIADPAIEEARLVDLIPGPDFPTGGVIVEPKANILEAYR 254

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG FR+RARW +E++GRG W IVVTEIPYQVQK++LIE++AELI  K++P L D+RDE
Sbjct: 255 TGRGAFRLRARWALEDLGRGQWQIVVTEIPYQVQKAKLIERLAELIETKKVPALADVRDE 314

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SAEDVRIVL P+ R+++P  LM  +F  S++E RF LNMNVL  GRVP+V  L  +L+ +
Sbjct: 315 SAEDVRIVLEPRARTVEPAQLMGMLFRNSELEVRFSLNMNVLIDGRVPKVCSLKEVLRAF 374

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---------PKP 415
           L HRREVL RRS  R++ I  R+E+L+G +IA+LN+D +I IIR ED             
Sbjct: 375 LDHRREVLCRRSRHRLEKIANRLEVLEGYIIAFLNLDRVIEIIRTEDDPKAALMAENWAA 434

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
              +   LTE Q +AILN+RLRSLR+LEE ++++E D+LL E+  +++LL S   QW QI
Sbjct: 435 EAGAVVHLTEVQAEAILNMRLRSLRRLEEMELRAERDDLLKERAGLEALLASEVAQWAQI 494

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           + E+ ++++ + K+T +G RRT F E +   +    +AMIE+EPITV++S  GW+R++K 
Sbjct: 495 SSELEDLRKTWGKATKIGARRTDFAE-AGEVEEVPIEAMIEREPITVILSKMGWVRAMKG 553

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H    + + FK+GD    ALHA TTDRI+L+ ++G+A+TL   NL  GRG GE ++L+++
Sbjct: 554 HQPLDAEVKFKDGDGQAFALHAETTDRIVLMGSNGRAWTLLGANLPGGRGMGEPVRLMLE 613

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + +  ++    V     K L+ SS+G+ FI    E+IA+TR GK  L +S   + ++   
Sbjct: 614 MPNEVEVTHVLVPKPGEKYLLASSEGDGFIAPAEELIASTRTGKQVLNMSDGVRTRVCRV 673

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            +GD VA VGENRKLL+F ++++PEM+RGKGVRLQ +KDGG+SD I F++ EGL+W D A
Sbjct: 674 ASGDAVACVGENRKLLVFPLEELPEMARGKGVRLQKFKDGGLSDAITFRLAEGLSWKDPA 733

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           GR   R+E DL  WLGKR   G + P+GFPR  +F
Sbjct: 734 GR--TRTEADLSEWLGKRASAGRMAPRGFPRDNRF 766


>gi|56695629|ref|YP_165980.1| DNA topoisomerase IV subunit A [Ruegeria pomeroyi DSS-3]
 gi|56677366|gb|AAV94032.1| DNA topoisomerase IV, A subunit [Ruegeria pomeroyi DSS-3]
          Length = 782

 Score =  663 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/783 (50%), Positives = 525/783 (67%), Gaps = 38/783 (4%)

Query: 3   VDNISNSNTLVEENVKAV--SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            D I + N   +     V   LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++A
Sbjct: 2   SDTIDDPNMKQDGGGHQVSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYA 61

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGN
Sbjct: 62  MRELRLSSSGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGN 121

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+ AA RYTEARMT VAE +L G++EDAVDFRD Y+   +EPVV P++FPNLLANG+
Sbjct: 122 IDGDNPAASRYTEARMTIVAEALLDGLNEDAVDFRDNYDGTLTEPVVLPAQFPNLLANGS 181

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+C+A L LI  P+   + LL Y+ GPDFPTGGIIVE  ESI 
Sbjct: 182 SGIAVGMATNIPPHNIAELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPPESIA 241

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG FR+R ++ VE++GRG W IVVTEIPYQVQKS+LIEK+AE+I  K++P+L D
Sbjct: 242 QAYRTGRGSFRLRCKYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPILAD 301

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESA+D+R++L P+ +++DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +
Sbjct: 302 VRDESADDIRLILEPRTKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEV 361

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+ +L HR+EVL RRS  R+  ID R+E+L+G +IA+LN+D +I IIR ++ PK  ++  
Sbjct: 362 LRAFLDHRQEVLLRRSRHRLGKIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAALMRE 421

Query: 421 FS----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   L+E Q +AILN+RLRSLR+LEE ++  E D L+AE+
Sbjct: 422 EWGIDHPRALNEADYVSPAPGEGELSEVQAEAILNMRLRSLRRLEEMELIRERDALMAER 481

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            +I+ LL     QW +I+ +++E K+ F K    G RRT F E +   +    +AMIE+E
Sbjct: 482 AEIEDLLADPALQWARISDQLKETKKTFGKDFPGGARRTRFAE-AGEVEEVPLEAMIERE 540

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           PITVV S  GW+R++  H      L FK+GD  +   HA TTD++L+ +++G+ YT+ A 
Sbjct: 541 PITVVCSQMGWVRAMTGHIDLTRELKFKDGDGPRFIFHAETTDKLLVFASNGRFYTIGAA 600

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG GE ++L++DL +  +IV   ++    KLLV S+ GN F+V E+E++A TR G
Sbjct: 601 NLPGGRGMGEPLRLMVDLPNEAEIVDILIHQPERKLLVASTAGNGFVVPETEVVAQTRTG 660

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK----- 693
           K  L V  +E+  + V V GDHVAVV +N K L+F +D++PEM RGKGVRLQ Y      
Sbjct: 661 KQVLNVRDDERALICVPVAGDHVAVVSQNGKFLVFPLDEMPEMGRGKGVRLQKYNMARGK 720

Query: 694 ------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DGG+SDV  F   EGL W  S G    R E DL  WL KR  VG   P GFPRS
Sbjct: 721 QGALELDGGLSDVTTFTWAEGLKW--SMGGDKTRHETDLSQWLAKRASVGKRPPYGFPRS 778

Query: 748 GKF 750
            KF
Sbjct: 779 YKF 781


>gi|194397830|ref|YP_002037821.1| DNA gyrase subunit A [Streptococcus pneumoniae G54]
 gi|194357497|gb|ACF55945.1| DNA gyrase, A subunit [Streptococcus pneumoniae G54]
          Length = 822

 Score =  663 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 402/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHXAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVT  PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTXFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|299782690|gb|ADJ40688.1| DNA gyrase subunit A [Lactobacillus fermentum CECT 5716]
          Length = 836

 Score =  663 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/757 (30%), Positives = 386/757 (50%), Gaps = 16/757 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               +   +  V+L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+  
Sbjct: 2   PEQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA
Sbjct: 62  DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+M+++A  +L+ +++D VDF+D Y+  + EP V P++FPNLL NG SGIAVGMA
Sbjct: 122 MRYTEAKMSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP+HN+ E+  A   L++NP++++ +L++ + GPDFPTGG +V  +  I ++Y  G+G
Sbjct: 182 TNIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGG-VVMGKAGIRQAYESGQG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +EE   G   IVV EIPY V K++LIE+IA L   K I  + D+ DE+  +
Sbjct: 241 SIIVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDRE 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R    ++++ +++ ++ M+T +  NM  +     P+++ L  IL+ +L H+
Sbjct: 301 GMRIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVK-GAPKILSLKEILQYYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTE 425
            EV+ RR+ F ++    R  I+ GL IA  +ID II IIR+ +     K  ++  +SL++
Sbjct: 360 EEVVRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSD 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+LRL  L  LE  +I+ E   L+A       +L   ++    I  E+ E++  
Sbjct: 420 RQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADYKDILAHQERINQIIYDELMEIQNK 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALH 544
           F        +      +   D    +  ++       V        ++       +  + 
Sbjct: 480 FGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNGYVKRLPVDEFKAQNRGGRGVKGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDI 602
               D ++  + + T D +L  +  GK + +    +        G  I  L+D++  + +
Sbjct: 540 VHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIPEYGRAAQGIPIINLLDVDGKEKV 599

Query: 603 VTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                      D    L  V+ +G       +E       G   + +   +++  V  V 
Sbjct: 600 TAVINIAQREDDLQKDLFFVTRQGTVKRTPVTEFKNIRSNGIKAINLHEGDELINVAIVD 659

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D   ++G +      F +  +  M R   GVR    +DG    +    + E    +  +
Sbjct: 660 DDQNMILGTHLGHAATFKVSAVRSMGRSAAGVRGARLRDGDYL-IGAAPLNEDDQVLVIS 718

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG+G        ++G    
Sbjct: 719 EKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPLAG 755



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 61/183 (33%), Gaps = 6/183 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  + A++  EGD L           ++L +  G A T     + S      A    
Sbjct: 635 NIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSMGRSA-AGVRG 693

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
             L     ++ A   +   ++LV+S KG       SE     R G     V+       +
Sbjct: 694 ARLRDGDYLIGAAPLNEDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPL 753

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             +  V GD  + VV +   ++ F ++ + +  R   GV L       +   +     E 
Sbjct: 754 AGLTTVQGDEDLMVVTDKGVIIRFGVESVSQTGRSAIGVHLIKMDADSVVATMTKVEKET 813

Query: 709 LTW 711
              
Sbjct: 814 AET 816


>gi|157803253|ref|YP_001491802.1| DNA topoisomerase IV subunit A [Rickettsia canadensis str. McKiel]
 gi|157784516|gb|ABV73017.1| DNA topoisomerase IV subunit A [Rickettsia canadensis str. McKiel]
          Length = 738

 Score =  663 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/742 (50%), Positives = 528/742 (71%), Gaps = 4/742 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKQAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDGAVYDTLVRLAQYFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT++  L++  +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTEICMLLMDDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LID+P+  +  ++ +I GPDFPTGGII++  E I  +Y  GRG  R
Sbjct: 181 PPHNLHELCDALIHLIDHPKAEVNDIMNFIKGPDFPTGGIIIDKAEVINAAYSTGRGSLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWKKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R+ DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRNCDPQVVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLDHRQSI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EIL+GL IAYLN DEII IIR ED+PK +M++ F LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIQHRLEILEGLRIAYLNFDEIIKIIREEDEPKAIMINWFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSL +LEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLHRLEEQKIINEHSNLKKQQVILEEILNNPKELWKVVKKEIKTVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT F EV+  ++     A I KEPIT++ S  GW+RS K H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTYFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSFKGHNNDLSNIKYKEGDTE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD++L++S++G+ +TL A N+  G+G  E+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILKAYTTDKLLIVSSEGRFFTLLADNISKGKGTEESIKLLVDIGNN-DITNILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E+IA T+ GK  + V +       +   GD VA +GE+RKLL
Sbjct: 600 QLLLLASSIGKGFLVNSNEVIAQTKTGKQIMNVPNGHICITCLPANGDSVACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +KD  + DV  F   +GL W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKDAKLLDVKIFNKEDGLGW---NNNGKVKLEKNIITFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
           KRGG G L P GFP++ +F SS
Sbjct: 717 KRGGAGKLPPMGFPKNNRFSSS 738


>gi|225016751|ref|ZP_03705943.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum
           DSM 5476]
 gi|224950419|gb|EEG31628.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum
           DSM 5476]
          Length = 868

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/767 (31%), Positives = 398/767 (51%), Gaps = 31/767 (4%)

Query: 6   ISNSNTLVEE--NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +SN  T       V  V +   +++ +L Y++S I  RA+PD+RDG KPVHRRI++ + E
Sbjct: 1   MSNEITFDPNIGKVIPVDIEREMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G+    A++KSA  VG V+G+ HPHGD SVYD+LVR+AQ F  RYPL+ G GNFG++DG
Sbjct: 61  NGIFPDKAYRKSADTVGSVLGRYHPHGDASVYDALVRMAQDFSLRYPLVDGHGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AAYRYTEA+M++++  +L  ++++ V+F   Y++   EP+V P++FPNLL NG++GI
Sbjct: 121 DPPAAYRYTEAKMSKISMEMLTDINKETVEFGMNYDDRLKEPLVLPARFPNLLVNGSTGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN++E+ +A   LIDNP+  +  ++  I GPDFPT G I+  +  I  +Y
Sbjct: 181 AVGMATNIPPHNLREVIDAISLLIDNPDAELYDIMSCIKGPDFPTAG-IIMGQSGIRAAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  +VRAR  +EE+  G + IVVTE+PYQV K+RLIE IA  +  KRI  +  +RD
Sbjct: 240 ATGRGKIQVRARAEIEEMNNGRFRIVVTELPYQVNKARLIESIANHVKDKRIEGISALRD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   ++    R  +P +++  ++  + M+  F +    L    VP+VM L  +L+ 
Sbjct: 300 ESNREGMRIVIELKRDANPQIILNKLYSFTQMQETFGVINLALV-NGVPKVMTLKEMLEH 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSR 420
           ++  + EV+ +R+ + ++    R  IL+GL IA   IDE+I  IR      + K  ++ R
Sbjct: 359 YIEFQSEVIRKRTEYDLRKAREREHILEGLKIALDFIDEVIKTIRASKTIAESKENLIER 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L E Q DAI+ +RL  L  LE  +I+ EL  LL + ++ +++L         +  E+ 
Sbjct: 419 FGLDELQADAIVKMRLGQLSGLERMKIEEELAGLLEKIKEYETILGDDALILVIVREELA 478

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
            +++ F        RRT              + +I +E   V +++ G+I+         
Sbjct: 479 AIRDKFGDE-----RRTEIL---AVSGEVDIEDLIPEEDCVVTLTHYGYIKRQPTDIYKT 530

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ- 591
            K     ++ +  +E D  +    A T D +L ++  G+ Y L    +  G    +    
Sbjct: 531 QKRGGRGVAGMKQREEDFAEELFIASTHDNVLFITNRGRMYKLKCYEIPEGGRTSKGTNI 590

Query: 592 -LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+ +  ++ + +      +D    L++V+  G              + G   + +   
Sbjct: 591 VNLLPIEGDEKVTSMIRITDFDPDQYLVMVTKSGMIKRTVLDAYKNVRKNGLIAISLLEG 650

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +++  V    G+  + V   N   + F  +    +SR  KGVR    + G    V   ++
Sbjct: 651 DELAWVRLTNGNSQLIVATRNGMAIRFDENDARPLSRSAKGVRAIKLR-GDDEVVGMARL 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            EG T +    R   R        +  RGG G +        G  ++
Sbjct: 710 REGATVMTVTDRGLGRRTKIEDYRIQTRGGYGKINYHVSDEKGHVVA 756



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 79/220 (35%), Gaps = 14/220 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E      + ++    + +   V+++  G I+     +        L A+   EGD L 
Sbjct: 595 PIEGDEKVTSMIRITDFDPDQYLVMVTKSGMIKRTVLDAYKNVRKNGLIAISLLEGDELA 654

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +   ++++ + +G A      +        + ++  I L  + ++V         
Sbjct: 655 WVRLTNGNSQLIVATRNGMAIRFDENDARPLSRSAKGVR-AIKLRGDDEVVGMARLREGA 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVT-GDHVAVVGENR 668
            ++ V+ +G     +  +    TR G   +       +  +  V  V   D + ++  + 
Sbjct: 714 TVMTVTDRGLGRRTKIEDYRIQTRGGYGKINYHVSDEKGHVVAVKVVDEDDDLILISNDG 773

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            ++   +  +  MSR   GV++   +  G + V+ F   +
Sbjct: 774 VIIRIRVSDVNVMSRYAGGVKVMRVQ--GDARVVTFARAD 811


>gi|226943698|ref|YP_002798771.1| DNA gyrase subunit A [Azotobacter vinelandii DJ]
 gi|226718625|gb|ACO77796.1| DNA gyrase, A subunit [Azotobacter vinelandii DJ]
          Length = 910

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/830 (29%), Positives = 404/830 (48%), Gaps = 92/830 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +D++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALID+PE++I++L++YI GPDFPT G I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLTEVIDGCLALIDDPELTIDQLMQYIPGPDFPTAG-IINGRAGIIEAYRTGRGRIYI 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  +E++ +  G   IVVTE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 243 RARAEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINVVALVD-GQPRLLNLKDMLEVFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ + ++    R  IL+G  +A  NID +I +I+    P                 
Sbjct: 362 VVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWASSAV 421

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL+LRL  L  LE  ++ +E   
Sbjct: 422 EAMVERAGADACRPEELGPQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +L S ++    I  E+ ++K  F  +       +             ++ 
Sbjct: 482 ILGQIGELIRILTSPERLLEVIREELEKIKAEFGDARRTEIVASQVDLTIADLITEEERV 541

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +      +A   K+ D ++  L A++   +LL S+ GK Y
Sbjct: 542 VTISHGGYAKSQPLAAYQAQRRGGKGKAATGVKDEDYVEHLLVANSHTTLLLFSSKGKVY 601

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD---------------------- 609
            L    +        G  +  L+ L+  + I      D                      
Sbjct: 602 WLKTYEIPEASRTSRGRPLVNLLPLDEGEGITAMLQVDLEALQQQNGADDELDEAEGALL 661

Query: 610 ------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
                                   +   + + ++ G    V   +     + G   L + 
Sbjct: 662 EGEVVETAETEEVEGETAELVAEPTGAYIFMATAFGTVKKVPLVQFSRPRKAGLIALDLV 721

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             + +       G   V +  +  K++ F+   +  M R  +GVR      G     +  
Sbjct: 722 EGDTLIAAATTDGAKEVMLFSDAGKVIRFAERVVRTMGRNARGVRGMKLGKGQRLISMLI 781

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               G   + ++ R Y +           RGG G +      R+G  + +
Sbjct: 782 -PESGAQILTASERGYGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIGA 830



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 61/144 (42%), Gaps = 7/144 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++L S  GK     A  ++   G        + L   Q +++  + +S  ++L  S +G 
Sbjct: 738 VMLFSDAGKVIRF-AERVVRTMGRNARGVRGMKLGKGQRLISMLIPESGAQILTASERGY 796

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                 S+     R G+  + + + E+   +   V+V  G+ + ++ +   L+   +D++
Sbjct: 797 GKRTPLSKFPRRGRGGQGVIAMVTNERNGALIGAVQVREGEEIMLISDQGTLVRTRVDEV 856

Query: 679 PEMSR-GKGVRLQSY-KDGGISDV 700
             + R  +GV L    +D  +  +
Sbjct: 857 SSLGRNTQGVMLIKLARDETLVGL 880


>gi|260437694|ref|ZP_05791510.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
 gi|292809920|gb|EFF69125.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
          Length = 835

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/766 (32%), Positives = 398/766 (51%), Gaps = 34/766 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  + + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+ +MSE+G    
Sbjct: 2   DEHIFDKVHEVDLKKTMEDSYIDYAMSVIAARALPDVRDGLKPVQRRILFSMSELGNGPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              +K ARIVG+ +GK HPHGD S+Y++LV+LAQ F  RYPL+ G GNFG+IDGD AAA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSIDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+T+++  +L  + +D VDF   ++E + EPVV PS++PNLL NGTSGIAVGMAT
Sbjct: 122 RYTEARLTKLSMEMLADIGKDTVDFIPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           +IP HN++E+ +A L +IDN      + +I++L+E + GPDFPTG  I+  +  I E+YR
Sbjct: 182 NIPPHNLREVIKAVLKIIDNRVLEDKDTTIDELMEIVKGPDFPTGATIL-GKSGIEEAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  RVRA   +  +  G   I++TE+PY V K+ LI+KIAEL+  K+I  +  I D+
Sbjct: 241 TGRGKIRVRAVSEINTLPNGKTEIIITELPYMVNKALLIQKIAELVKDKKIDGITGIIDQ 300

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V     R ++ ++++  ++  + ++  F +NM  L     P+V+ L  +L  +
Sbjct: 301 SNMQGIRVSIELRRDVNANVILNQLYKHTQLQDTFGVNMLALV-NNEPKVLNLHQMLTYY 359

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRF 421
           L H+ EV+ RR+ + +     R  IL+GLLIA  NIDE+I+IIR  +        ++ RF
Sbjct: 360 LEHQEEVVTRRTKYELNKAQERAHILEGLLIALDNIDEVISIIRGSESVNVAKQKLIERF 419

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q  AI+++RLR+L  LE  +I++E + L+   +++ ++L   K+    I  E+  
Sbjct: 420 GLSDAQSQAIVDMRLRTLTGLEREKIEAEYNELMKRIDELKAILADNKKLLMVIREELSI 479

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--- 538
           + + +        RRT        +     + MI  E   + ++N G+I+ +   +    
Sbjct: 480 IMDKYGD-----DRRTAI---GYDEFDISMEDMIPNESTVITMTNLGYIKRMTPDNFRSQ 531

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQ 591
                 +  +   + D ++  L   T + +L  +  G+ Y L A  +        G AI 
Sbjct: 532 NRGGRGIKGMQTIDDDYIEDILMTTTHNIVLFFTNKGRVYKLKAYEIPEAGRTARGTAIV 591

Query: 592 LLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+ L   + I      D       L + + +G        E     + G   + +   +
Sbjct: 592 NLLTLQAGEKISAIVPVDGIKDNEYLFMATKQGIVKKTYCKEYANIRKTGIQAITLRDND 651

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  V        + +V +    + F    +    R   GV   +  +G     +     
Sbjct: 652 ELIEVKATDSTKEIFLVTKYGYCIRFKETDVRPTGRSAMGVIGMNILEGDEVVGMQLN-T 710

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G T +  +     +        L  RGG G    K   +SG  + 
Sbjct: 711 QGDTLLIVSENGLGKRTPIEEFNLQNRGGKGVKCYKINEKSGNVIG 756



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 8/184 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            + A+  ++ D L       +T  I L++  G        ++         +  +  L  
Sbjct: 641 GIQAITLRDNDELIEVKATDSTKEIFLVTKYGYCIRFKETDVRPTGRSAMGVIGMNILEG 700

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVV 654
           ++ +V   +      LL+VS  G        E     R GK      +   S   +  V 
Sbjct: 701 DE-VVGMQLNTQGDTLLIVSENGLGKRTPIEEFNLQNRGGKGVKCYKINEKSGN-VIGVK 758

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
            V+    + ++     ++   +  I  + R   GV+L +  DG     +     E ++  
Sbjct: 759 AVSNTREIMLITTEGIIIRMEVAGISTLGRITSGVKLINLDDGVKVAKVAKVREEDVSDE 818

Query: 713 DSAG 716
             + 
Sbjct: 819 TESE 822



 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 74/204 (36%), Gaps = 10/204 (4%)

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
              ++  +A +   VK+ + K     R+        R +   ++    +      +++  
Sbjct: 612 KDNEYLFMATKQGIVKKTYCKEYANIRKTGIQAITLRDNDELIEVKATDSTKEIFLVTKY 671

Query: 528 GWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+    K   V         +  ++  EGD +         D +L++S +G     P   
Sbjct: 672 GYCIRFKETDVRPTGRSAMGVIGMNILEGDEVVGMQLNTQGDTLLIVSENGLGKRTPIEE 731

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--K 637
                  G+ ++       + +++      +T ++++++++G    +E + I    R   
Sbjct: 732 FNLQNRGGKGVKCYKINEKSGNVIGVKAVSNTREIMLITTEGIIIRMEVAGISTLGRITS 791

Query: 638 GKTFLKVSSEEKMKLVVKVTGDHV 661
           G   + +    K+  V KV  + V
Sbjct: 792 GVKLINLDDGVKVAKVAKVREEDV 815


>gi|256424423|ref|YP_003125076.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588]
 gi|256039331|gb|ACU62875.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588]
          Length = 859

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/764 (29%), Positives = 395/764 (51%), Gaps = 20/764 (2%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            N+    +  +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M+E+G 
Sbjct: 3   ENTENQQDGRIIQINIEEQMKTAYIDYSMSVIVGRALPDVRDGLKPVHRRVLFGMNELGN 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           +    +KKSARIVGEV+GK HPHGD S+YD++VR+AQP+  RY L+ GQGNFG++DGD  
Sbjct: 63  NSNKPYKKSARIVGEVMGKFHPHGDASIYDTIVRMAQPWSLRYMLVDGQGNFGSVDGDMP 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE R+ ++AE +L+ +D++ VDF   +++   EP V P++ PNLL NG SGIAVG
Sbjct: 123 AAMRYTEIRLQRMAEAMLEDIDKETVDFTLNFDDTLEEPTVLPTRIPNLLINGASGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+I  HN+ E+ +  +A IDN +I+IE+L++++  PDFPTGG I+   E + + +  G
Sbjct: 183 MATNIMPHNLSEVVDGLIAYIDNRDITIEELIKHVKAPDFPTGG-IIYGYEGVKQGFETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   VR +  VE    G   +V+ E+PYQ+ K+ L +KIA+L   K I  + + RDES 
Sbjct: 242 RGRVVVRGKVNVETSKAGRERLVIYELPYQINKAALHQKIAQLADDKIIEGISEARDESD 301

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            D   ++    R    ++++  ++  S+++T + +N   L     P+V+ L  +L E++ 
Sbjct: 302 RDGMRLVIDLKREAIANVVINQLYKYSELQTSYGINNVALVK-GRPRVLNLKDMLSEFVD 360

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSL 423
            R EV+ RR+ F ++  + +  IL+G LIA  ++DE+IA+IR    P+      ++RF L
Sbjct: 361 FRHEVVVRRTRFDLRKAEEKAHILQGYLIALDHLDEVIALIRASRTPEEAKEGLMTRFEL 420

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL LRL+ L  +E  +IK E D ++     +  +L+    ++  I  E+ +VK
Sbjct: 421 SEIQSKAILELRLQRLTGMERDKIKEEYDEVMKLIAYLKEILSDEGLRFKIIKDELEDVK 480

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F        +            A     +       +  ++    R  K         
Sbjct: 481 KRFGDERKTEIQYLASEMRMEDIIAEEDVVITISHLGYIKRTSAYDYRQQKRGGRGALGG 540

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             +E D ++    A T   +L  +  G+ Y L    +  G   G+  AIQ LI+L  +  
Sbjct: 541 KTREEDYIEHLFVASTHHTMLFFTEKGRCYWLKVYEIPEGEKSGKGRAIQNLINLPTDDK 600

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I             + S+  +++ ++ G        +     + G   + ++  +++   
Sbjct: 601 IRAIIDIKDLGDKEFISSHYIVLCTANGIIKKTLLEDFSRPRQNGVNAITINEGDQLLEA 660

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY--KDGGISDVICFKICEGL 709
               G+  + +  ++ + + F  + + +  RG  GVR          +  +IC    +  
Sbjct: 661 KLTNGNSQIMMAIKSGRAIRFPENTVRDTGRGAIGVRGIEVDNDKDEVVGMICVNKEDET 720

Query: 710 -TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            T +  + + + +  +     +  RGG G        ++G  ++
Sbjct: 721 RTVLVVSEKGFGKRTDIEEYRITNRGGKGVKTINITEKTGSLIA 764



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 81/243 (33%), Gaps = 9/243 (3%)

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           R ++ + +  TD   R     +     +      ++      ++          +     
Sbjct: 587 RAIQNLINLPTDDKIRAIIDIKDLGDKEFISSHYIVLCTANGIIK-KTLLEDFSRPRQNG 645

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           ++A+   EGD L  A   +   +I++    G+A   P   +         ++ +   N  
Sbjct: 646 VNAITINEGDQLLEAKLTNGNSQIMMAIKSGRAIRFPENTVRDTGRGAIGVRGIEVDNDK 705

Query: 600 QDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKL 652
            ++V        D T  +LVVS KG     +  E     R GK      +   +   + +
Sbjct: 706 DEVVGMICVNKEDETRTVLVVSEKGFGKRTDIEEYRITNRGGKGVKTINITEKTGSLIAI 765

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTW 711
           +     D + +  ++   +  ++  I E  R  +GVRL    D      +     +    
Sbjct: 766 LDVTEKDDLMITCKSGITIRMAVADIREAGRATQGVRLIRLDDSDEIAAVARLDEQEEQR 825

Query: 712 IDS 714
           +D 
Sbjct: 826 LDE 828


>gi|227485762|ref|ZP_03916078.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236317|gb|EEI86332.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
          Length = 815

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/748 (32%), Positives = 398/748 (53%), Gaps = 13/748 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            +N+  + L   ++  YL Y++S I  RA+PD+RDG KPVHRRI++ M ++GLD     +
Sbjct: 4   NQNIINIDLEKKMKSSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMQQLGLDPNKPTR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD ++YD+LVRLAQ F  RYPL  GQGNFG+IDGD AAA RYTE
Sbjct: 64  KSARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDQAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM+++A+ +L+ + +D VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT++  
Sbjct: 124 VRMSKIAKEMLRDIGKDTVDFIPNFDGEEMEPSVLPSRFPNLLVNGSNGIAVGMATNMAP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +A + NPEISI+ L+++I GPDFPTG  ++  +  I E+Y  GRG  + R
Sbjct: 184 HNLGESIDACIAYMRNPEISIDDLIKFIPGPDFPTGA-LILGKTGIKEAYTTGRGKIKQR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A   +E   +    I+++EIPYQV K+RLIEKIA+L+  KRI  + DIRDES      ++
Sbjct: 243 AVCRIEPFKKNRERIIISEIPYQVNKARLIEKIADLVKEKRIDGISDIRDESDRKGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  + +E  F +    L  G  P+++ L  +++ ++ H++EV+ 
Sbjct: 303 VEIKRDSNANIVLNNLYKYTQLENTFGIINLALV-GGEPKILNLKELIEYYVDHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDA 430
           RR++F +     R  I++GL+IA  +IDEII IIR+      +    F    L++ Q  A
Sbjct: 362 RRTNFDLSRARERKHIVEGLIIAIDHIDEIIKIIRSSYDNDEIKKIFFDRYKLSDAQSQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  ++ +E   L    E + S+LNS +   N I  EI E+KE +S   
Sbjct: 422 ILDMQLKRLSGLEIEKLNAENKELADTIEYLLSILNSEENLINLIIDEITEIKEKYSDER 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +   +   +        +        ++A + KEGD 
Sbjct: 482 RTKIVPDEGEIDITELIEEEDILINLTKDGYIKRLPIDTYKVQNRGGKGIAAGNTKEGDF 541

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVY 608
           +K  +  +T + +L  ++ GK Y+L A  +        G+AI  +++L   + I      
Sbjct: 542 IKKIITTNTHEDLLFFTSLGKVYSLEAYKIPEGSRTSRGQAIINILNLETGEKITEMMTL 601

Query: 609 DS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV- 664
                  +L++ + +G     +        R G   + +   +K+  V ++  D   ++ 
Sbjct: 602 SELSKNSQLVLQTQQGQIKKTDAENFTNIRRNGIIAISLKDWDKLISVRQIDKDEELIIS 661

Query: 665 GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
            +N   + F+   +  M R   GVR            +  K  E    +      + +  
Sbjct: 662 TQNGMTIQFNTKDVRSMGRSAVGVRAIRLDKDDAVVSMNIK-GEETYLLVVTENGFGKKT 720

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +        RGG G    K   ++GK +
Sbjct: 721 SFSNFKNQNRGGKGVRCHKVSEKTGKVV 748


>gi|163846815|ref|YP_001634859.1| DNA gyrase subunit A [Chloroflexus aurantiacus J-10-fl]
 gi|222524636|ref|YP_002569107.1| DNA gyrase subunit A [Chloroflexus sp. Y-400-fl]
 gi|163668104|gb|ABY34470.1| DNA gyrase, A subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222448515|gb|ACM52781.1| DNA gyrase, A subunit [Chloroflexus sp. Y-400-fl]
          Length = 822

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/755 (33%), Positives = 403/755 (53%), Gaps = 27/755 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V++   +   YL+YA+S I  RA+PD RDG KPV RRI++ M +MG      +KKSA
Sbjct: 6   VRPVNITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK+HPHGD +VYD+L R+AQP+  RYPLI GQGNFG+IDGD  AA RYTEAR+
Sbjct: 66  RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +AE +L  +++D VDFRD ++    EPVV P+  PNLL NG SGIAVGMAT+IP HN+
Sbjct: 126 APIAEELLSEIEKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A   LI++PE ++E+L++ I GPDFPT G ++   E I+ +Y  GRG   +RA+ 
Sbjct: 186 GELCDAISYLIEHPEATVEELMKIIPGPDFPTAG-LILGTEGILAAYSTGRGQITLRAKT 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE GRG++ IVVTE+PYQV K+RL E+IAEL+  ++I  + D+RDES      ++   
Sbjct: 245 HIEEAGRGAFMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRTGMRLVILL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   P  ++ +++  + M+T F +NM  L   GR P+V+ L  +L+E++ HR+EV+ RR
Sbjct: 305 KQDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYITHRQEVIRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F +     R  IL+GL IA  N+D +I  IR+       +  ++S FSLTE Q  AIL
Sbjct: 365 TEFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMSNFSLTERQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +L+LR L  LE  +I+ E   ++    +++ +L + ++  + I  ++  +KE +      
Sbjct: 425 DLQLRRLAALERKKIEDEYREVIKLIAELEDILANPRKVLHLIQQDLTRLKEKYGDP--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT              + +I    + + +++RG+I+          +     +  + 
Sbjct: 482 --RRTRIIPDVTG--EVSDEDLIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGRGIKGML 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
            +E D ++  L  ++ D +L  +  GK Y L A  +       +   +  LI L   + +
Sbjct: 538 TREQDIVRHLLTCNSLDNLLFFTDRGKVYQLKAHEVPDSSRTAKGLPLVNLISLEPGEQV 597

Query: 603 VTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
            +           L++ + +G     +  E       G   + +   + +  V    G +
Sbjct: 598 TSMLAVREFDAEYLVMATVRGKIKRTQLREYSQVRSNGLIAIGLEEGDVLGWVRVSHGHE 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +     + L F   ++  M R   GV   +  DG     +     EG   +    R 
Sbjct: 658 DILLTTARGQTLRFEQSEVRPMGRPATGVIGINLADGDRVVSMDLA-EEGADLLVVTARG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +        +  R   G +  K      +  ++
Sbjct: 717 IGKRTALSEYPVKGRATGGVITIKLRNDLDEVAAA 751


>gi|298502785|ref|YP_003724725.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238380|gb|ADI69511.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 841

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 20  MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 79

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 80  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 139

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 140 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 199

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 200 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 258

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 259 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 318

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 319 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 377

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 378 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 437

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 438 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 497

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 498 -----KRRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 550

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 551 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 610

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 611 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 670

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 671 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 729

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 730 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 769


>gi|254438270|ref|ZP_05051764.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 307]
 gi|198253716|gb|EDY78030.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 307]
          Length = 804

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/773 (50%), Positives = 534/773 (69%), Gaps = 31/773 (4%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++S+     + N     LR AL +RYL YALSTI  RA+PD RDG KPVHRRI++AM E+
Sbjct: 35  SMSDDAPDPKMNPTET-LRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMREL 93

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD
Sbjct: 94  KLASKGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGD 153

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           + AA RYTEARMT  AE +L+G++E+AVDFR+ Y+    EPVV P+ FPNLLANG+SGIA
Sbjct: 154 NPAAARYTEARMTAAAEALLEGLNENAVDFRENYDGTLEEPVVLPAAFPNLLANGSSGIA 213

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN++E+  A L LI  P+   E L+ YI GPDFPTGG+IVE +E+I E+YR
Sbjct: 214 VGMATNIPPHNLEELIGACLHLIKTPDARDETLMNYIPGPDFPTGGVIVEPKENIAEAYR 273

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+GGFR+R ++ VE++GRG W ++VTEIPYQVQKSRLIEK+AE+I  K++P+L D+RDE
Sbjct: 274 TGKGGFRLRCKYEVEDLGRGQWQVIVTEIPYQVQKSRLIEKLAEVIELKKVPILADVRDE 333

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SAED+RIVL PK++++D ++LM  ++  S++ETRF LNMNVL  G  P+V  L  +L+ +
Sbjct: 334 SAEDIRIVLEPKSKNVDVEVLMGMLYRNSELETRFSLNMNVLIDGLTPKVCSLKEVLRAF 393

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------ 418
           L HRR+VL RRS+ RM  ID R+E+L+G +IA+LN+D +I IIR ++ PK  ++      
Sbjct: 394 LDHRRDVLIRRSTHRMVKIDHRLEVLEGFIIAFLNLDRVIDIIRYDNDPKKALMAEDWGK 453

Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                    LT+ Q +AILN+RLRSLR+LEE ++  E D L+ E
Sbjct: 454 THVRAMDEADYVSPLTALVGEPEMGLTDVQAEAILNMRLRSLRRLEEIELVKERDALMLE 513

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           +  ++ LL+S   QW  IA ++RE +++F  ++  G RRT F E +   +    +AMI+K
Sbjct: 514 RAGLEDLLDSDDLQWKTIAEQLRETRKLFGSNSKGGARRTAFAE-AGVIEDVPLEAMIDK 572

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           EP+TVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+  ++G+ YTL A
Sbjct: 573 EPVTVVCSKMGWIRAMTGHIDLARELKFKDGDEGRFVFHAQTTDRLLVFGSNGRFYTLGA 632

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
             L  GRG GE ++L++DL +  +IV  F++ +  +L++VSS G+ FIV E ++IA TR 
Sbjct: 633 STLPGGRGMGEPLRLMVDLPNEAEIVALFIHRAGNRLMIVSSAGDGFIVPEDDVIAQTRA 692

Query: 638 GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI 697
           GK  L V  + + K+   V GDHVA VGENRK+L+F +D++PEM RGKGVRLQ YKDGG+
Sbjct: 693 GKQALNVKGDVRAKVCSTVIGDHVACVGENRKVLLFPLDELPEMGRGKGVRLQKYKDGGL 752

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           SD   F + +GL+W+D AGR   R++ +L  W  KR G G + P+GFPR  +F
Sbjct: 753 SDATTFTLADGLSWLDPAGR--TRTQTELGEWAAKRAGAGRMAPRGFPRDNRF 803


>gi|73916146|gb|AAZ92941.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDXP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|294794230|ref|ZP_06759366.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44]
 gi|294454560|gb|EFG22933.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44]
          Length = 803

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/740 (34%), Positives = 389/740 (52%), Gaps = 15/740 (2%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKSARIVG+V+GK
Sbjct: 1   MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA RYTE RM ++ + +L 
Sbjct: 61  YHPHGDISVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITQEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+C     
Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP++++++L+  I GPDFPTG  ++  RE I ++Y  GRG  ++RAR  +EE+ +G 
Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGA-LILGREGIKKAYSTGRGSVKMRARATIEEMSKGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVVTEIPYQV K+R+IE IA L   K I  +  +RDES      ++      + PD++
Sbjct: 240 HKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++  F + M  L     P+V+ L  +L  +L HR +V+ RR+ F +   + 
Sbjct: 300 LNKLYKHTQLQETFGVIMLALVD-GHPRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEA 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GLLIA  +IDE+IA IR+       +  ++ +F L+E Q  AIL++RLR L  L
Sbjct: 359 RAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAILDMRLRRLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+ E   LLA  E + ++L +  +Q   I  E+ ++K+ +           T    
Sbjct: 419 EREKIEEEYKELLALIEDLKAILANEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLD 478

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                A  +  +   +   +   N    R+       +  +  KE D +   +H  T + 
Sbjct: 479 VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNT 538

Query: 563 ILLLSTDGKAYTLPAGNLLS---GRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLV 616
           +L  ++ G+AY L A  +         G A+  ++ L   + + T    +       L +
Sbjct: 539 LLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDLERVHEDVNLFM 598

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-GENRKLLIFSI 675
           V+  G        E     R G   + +   +++  V   TG+   ++  +    + FS 
Sbjct: 599 VTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSE 658

Query: 676 DQIPEMSRGK-GVRLQSYKDGGISDVICF--KICEGLTWIDSAGRSYNRSENDLLGWLGK 732
             +  M R   GVR      G +                   +   + +  +     L K
Sbjct: 659 HDVRLMKRAAHGVRGIKLNAGDVVVGAGVLNTDESEAQVFTISEEGFGKRNDAEAYTLQK 718

Query: 733 RGGVGSLVPKGFPRSGKFLS 752
           RGG GS   K   ++G  ++
Sbjct: 719 RGGKGSKNFKITNKTGDVVA 738



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 10/197 (5%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+               L+A++  EGD L           IL+ +  G A      ++  
Sbjct: 604 VVKRTAIEEYRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRL 663

Query: 583 GRGHGEAIQLLIDLNHNQDIVT--AFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGK 639
            +         I LN    +V       D    ++  +S +G     +        R GK
Sbjct: 664 MKRAA-HGVRGIKLNAGDVVVGAGVLNTDESEAQVFTISEEGFGKRNDAEAYTLQKRGGK 722

Query: 640 TF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE-MSRG-KGVRLQSYK 693
                 +   + + + + V    D V ++ E  K++ F+++ I     +   GV+ Q+  
Sbjct: 723 GSKNFKITNKTGDVVAVEVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLD 782

Query: 694 DGGISDVICFKICEGLT 710
           +G     I       + 
Sbjct: 783 EGDKVASIAVIPGAEIE 799


>gi|42521655|ref|NP_967035.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100]
 gi|39574185|emb|CAE77689.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100]
          Length = 827

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/764 (31%), Positives = 395/764 (51%), Gaps = 29/764 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N   E+ V  V +   +   YL Y++S I  RA+PD+RDG KPVHRR++ A SEM    
Sbjct: 2   ENNQEEKGVTLVDISKEMRGAYLQYSMSVIVGRALPDVRDGLKPVHRRVLFAQSEMNNRH 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VG+VIGK HPHGD SVYD++VR+AQ F  RYPL  GQGNFG+IDGDS AA
Sbjct: 62  NRPYLKSARVVGDVIGKYHPHGDASVYDTMVRMAQDFSLRYPLEDGQGNFGSIDGDSPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE R+T +AE +L  ++++ V F   Y++    P V PSKFPNLL NG++GIAVGMA
Sbjct: 122 MRYTEIRLTALAEELLNDLEKETVSFGPNYDDSLLIPTVLPSKFPNLLVNGSAGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  + LI NP+  IE L+++I GPDFPT   ++  RE I+++Y+ GRG
Sbjct: 182 TNIPPHNLGEVIDGCIHLIGNPDCQIEDLMQHIKGPDFPT-CGVIAGREGILQAYKKGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              ++A   + +V      I++TEIPYQV K++LIE +A+L+  K+I  + DIRDES+ +
Sbjct: 241 IVTIKAVAEIVQVK-DREEIIITEIPYQVNKAKLIESMADLVRDKQIEGISDIRDESSRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  +  +++  ++  + M+T F + M  L     P    L G+L+ ++ HR
Sbjct: 300 GMRIVVVLKRGENASVILNRLYKYTQMQTSFGIIMLALDAKNQPVTFDLKGMLEAFVDHR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTE 425
           R+V+ +R  F ++    R  IL+GL  A  +I+E+I  IR   +       ++S+F  +E
Sbjct: 360 RDVVTKRCIFELKKAQERAHILEGLKKALDHIEEVIKTIRASKEANAAREALMSKFEFSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL +RL+ L  LE  +I +EL  L+ + + +  +L+  ++ +  I  E+ +VK+ 
Sbjct: 420 RQAVAILEMRLQRLTGLERDKIVAELAELMKQIDWLKFVLSDVREIYKIIVSELEDVKKR 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           ++       RRT     +        + +I  E + V ++N G I+          K   
Sbjct: 480 YADP-----RRTQI---TGDLSDLEDEDLIADEQMVVTVTNTGLIKRIPVEEYRVQKRGG 531

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             L  +  KE D +     A T   +L+ +  GK Y      L   +    G+++  ++ 
Sbjct: 532 KGLKGMETKEEDYVTDIFSASTKTMLLVFTDKGKVYWCKVHRLPLGTRTSKGKSLANVVQ 591

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L++ + +        +      ++++ KG                G   L    ++ +  
Sbjct: 592 LSNGESVRAILPVNEFSENKYAVMLTEKGVIKKTSLDAFANPRTAGIIALTTDLDDGVID 651

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI-CFKICEGL 709
           V    G   + +  +    + F+   + EM R  +GV+  +     +   +   +     
Sbjct: 652 VKISDGQSDIFIATKEGMSIRFNEADVREMGRTARGVKAITLAKDDVVVAMEVLEKNTKD 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           T +    + Y +        +  RGGVG +  K   + G  + +
Sbjct: 712 TILMVTSKGYGKRSETGEYRIQSRGGVGIITQKTTDKVGLVIGT 755



 Score = 81.0 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 69/200 (34%), Gaps = 8/200 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           VI            +  + AL     D +     +     I + + +G +      ++  
Sbjct: 621 VIKKTSLDAFANPRTAGIIALTTDLDDGVIDVKISDGQSDIFIATKEGMSIRFNEADVRE 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKT 640
                  +   I L  +  +V   V +   K  +L+V+SKG     E  E    +R G  
Sbjct: 681 MGRTARGV-KAITLAKDDVVVAMEVLEKNTKDTILMVTSKGYGKRSETGEYRIQSRGGVG 739

Query: 641 FLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            +   + +K+ LV+          + +  +  +++   +  I  + R  +GVRL +  + 
Sbjct: 740 IITQKTTDKVGLVIGTKKVADNMELILSTDKGQVIRMKVTDISVLGRNTQGVRLINIDEK 799

Query: 696 GISDVICFKICEGLTWIDSA 715
             +      + E  T  +  
Sbjct: 800 DETVTGVAVVAEDETATEET 819


>gi|313500067|gb|ADR61433.1| DNA gyrase subunit A [Pseudomonas putida BIRD-1]
          Length = 919

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/838 (30%), Positives = 413/838 (49%), Gaps = 108/838 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE++I++L+++I GPDFPT G I+  R+ I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPEVTIDELMQFIPGPDFPTAG-IINGRQGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVD-GRPRLLNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL+LRL  L  LE  ++ +E   
Sbjct: 422 QVMVERAGADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +L+S ++    I  E+  ++  +        RRT       A        
Sbjct: 482 ILEQIGELIRILSSAERLMEVIREELEAIRAEYGD-----VRRTEIL---NASHDLNYGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           MI +E   V IS+ G+         ++ +      SA   K+ D ++  L A++   +LL
Sbjct: 534 MIPEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD-------------- 609
            S+ GK Y      +        G  +  L+ L   + I      D              
Sbjct: 594 FSSKGKVYWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDELL 653

Query: 610 --------------------------------STCKLLVVSSKGNAFIVEESEIIANTRK 637
                                           +   + + ++ G        +       
Sbjct: 654 DEADDTVLEGELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSN 713

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   LK+   + +       G   V +  +  K++ F+   + EM R  +GVR      G
Sbjct: 714 GLIALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRNARGVRGMKLGKG 773

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +      G   + ++ R + +           RGG G +      R+G  + +
Sbjct: 774 QRIISMLI-PESGSQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGA 830



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +++ S  GK     A +++   G        + L   Q I++  + +S  ++L  S +G 
Sbjct: 738 VMMFSDAGKVIRF-AESVVREMGRNARGVRGMKLGKGQRIISMLIPESGSQILTASERGF 796

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK--LVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 S+     R   G   +       +    +    G+ + ++ +   L+   + ++
Sbjct: 797 GKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEV 856

Query: 679 PEMSR-GKGVRLQSYKDGG 696
             +SR  +GV L       
Sbjct: 857 SSLSRNTQGVTLIKLAADE 875


>gi|156888529|gb|ABU96669.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888531|gb|ABU96670.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/756 (31%), Positives = 391/756 (51%), Gaps = 21/756 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y ++V +AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYGAMVCMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F     +     VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRRDASANVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q 
Sbjct: 359 ITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA- 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
             +  R      EV   +   L +             +    +   R+ K     +    
Sbjct: 478 --NSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTG 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             + D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L   + I
Sbjct: 536 VNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETI 595

Query: 603 VTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            T                 + +G     E SE     + G   L +   +++  V+   G
Sbjct: 596 QTIINARKEETAGKSFFFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            D + +  ++   + F+   I  M R   GVR  S ++     V   +I +    +    
Sbjct: 656 QDDIIIGTQSGYSVRFNEASIRNMGRSATGVRGVSLREDDRV-VGASRINDHQEVLVITE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +           RGG G       P++G+   
Sbjct: 715 NGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 57/160 (35%), Gaps = 8/160 (5%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            +  D I++ +  G +      ++ +       ++  + L  +  +V A   +   ++LV
Sbjct: 653 TNGQDDIIIGTQSGYSVRFNEASIRNMGRSATGVRG-VSLREDDRVVGASRINDHQEVLV 711

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           ++  G     E +E     R GK      +   +  ++  +V V G + + V+     ++
Sbjct: 712 ITENGYGKRTEATEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVII 770

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
             ++  I +  R   GV++                 +   
Sbjct: 771 RTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEE 810


>gi|3550980|dbj|BAA32701.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETFDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRCV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|153815429|ref|ZP_01968097.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756]
 gi|145847288|gb|EDK24206.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756]
          Length = 853

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/770 (31%), Positives = 399/770 (51%), Gaps = 37/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MEDN---IFDKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   +++D VDF   ++E + EPVV PS+FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E+  A + +ID+      E SIE +L+ I GPDFPTG  I+     I 
Sbjct: 178 GMATNIPPHNLREVINAVVKIIDDQIDENGETSIEDILQIIKGPDFPTGAEIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   I+VTE+P+ V K+RLIEKIAEL+  K++  + D
Sbjct: 237 EAYRTGRGKIRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D+S+ +   +     R ++P++++  ++  + ++  F + M  L     P+VM +  +
Sbjct: 297 LSDQSSREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALV-NNEPKVMNILDM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           LK +L H+ EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR     +      
Sbjct: 356 LKYYLKHQEEVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAEL 415

Query: 420 --RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             RF L+E Q  AI+++RLR+L  LE  ++++E   L+ + E+  ++L   K     I  
Sbjct: 416 ISRFDLSEVQAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAILADRKLLLGVIRK 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           EI  + E +        RRT        +     + +I +E + + ++N G+I+ +    
Sbjct: 476 EILVISEKYGDE-----RRTHI---GYDEFDISMEDLIPRENVVITVTNMGYIKRMSMDT 527

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   E D ++      +   I+  +  G+ Y L A  +        G
Sbjct: 528 FKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAGRTARG 587

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            A+  L+ L  ++ I        Y+    L + + KG        + +   + G   + +
Sbjct: 588 TAVINLLQLMPDEKITATIPIKEYEDGKYLFMATKKGLVKKTPIQDYMNVRKTGLAAISL 647

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++ +  V        + +V +  + + F+   +    R   GVR  +  D      + 
Sbjct: 648 REDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRSTGRVSMGVRGMNLSDNDEIIGMQ 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +G   +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 708 MS-SQGKDMLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITEKTGNVVG 756



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 6/147 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             ILL++  G+       ++ S       ++ + +L+ N +I+   +      +L+VS K
Sbjct: 663 QDILLVTKYGQCIRFNEKDVRSTGRVSMGVRGM-NLSDNDEIIGMQMSSQGKDMLIVSEK 721

Query: 621 GNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G        E     R GK      +   +   + +        + ++     ++     
Sbjct: 722 GMGKRTSMEEFTKQNRGGKGVKCYKITEKTGNVVGMKAVDEESEIMIINTEGIVIRMKCS 781

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVIC 702
            I +  R   GV+L +  +      + 
Sbjct: 782 DISQYGRITSGVKLINLPEKERVASVA 808



 Score = 40.9 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 52/136 (38%), Gaps = 9/136 (6%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S+ +  ++  + D +     +     +L++S  G                G+ ++     
Sbjct: 689 SMGVRGMNLSDNDEIIGMQMSSQGKDMLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKIT 748

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVV 654
               ++V     D   ++++++++G    ++ S+I    R   G   + +  +E++  V 
Sbjct: 749 EKTGNVVGMKAVDEESEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKERVASVA 808

Query: 655 K-------VTGDHVAV 663
           K       + G+ V +
Sbjct: 809 KVRTASAEIDGEEVEI 824


>gi|146341364|ref|YP_001206412.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. ORS278]
 gi|146194170|emb|CAL78191.1| DNA topoisomerase IV, subunit A [Bradyrhizobium sp. ORS278]
          Length = 750

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/735 (54%), Positives = 539/735 (73%), Gaps = 1/735 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKKS
Sbjct: 12  EIHEVALRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEAR
Sbjct: 72  AKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L+G+DED V+FR  Y+ +  EPVV P  FPNLLANG  GIAVGMATSIP HN
Sbjct: 132 MTDVARLLLEGIDEDGVEFRPNYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATSIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LI+ P+     LL ++ GPDFPTGG +++S+ESI+E+Y  GRG FRVRA+
Sbjct: 192 AAELCDAALHLIEKPDAKSRALLRWVKGPDFPTGGTVIDSKESIIEAYTTGRGSFRVRAK 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE  RG+W +V+TEIP+ VQKSRL+EKIAEL+  K++PL+ D+RDESAEDVR+V+ P
Sbjct: 252 WKQEEGNRGTWVVVITEIPFLVQKSRLVEKIAELLNEKKLPLVGDVRDESAEDVRLVIEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K++++DP L+MES+F L+D+E++ PLN+NVL  G++P+V+ L   L+EWL H R+VL RR
Sbjct: 312 KSKNVDPALMMESLFRLTDLESKIPLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S++R + I+ R+EIL G LIAYLNIDE+I IIR ED+PKPV++  F LTE Q +AILN+R
Sbjct: 372 SNYRKKQIENRLEILGGYLIAYLNIDEVIRIIRTEDEPKPVLMKTFKLTEVQAEAILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE +I++E  NL  E + I+ LL S   QW ++  +++ V+++F   T LG+R
Sbjct: 432 LRSLRKLEEMEIRTEDKNLRGELKGINELLGSEPLQWAKVGEQVKTVRDMFGPKTPLGKR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +    D A +++A IE+EP+TVV+S +GW+R+LK H  DLS L FK  D L  + 
Sbjct: 492 RTNFADAPEHDLAAIEEAFIEREPVTVVVSEKGWVRTLKGHVADLSNLQFKTDDQLGQSF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A  T ++LL +T+GK Y+L  G L  GRGHGE I++ IDL+ +  IV+ FV     K L
Sbjct: 552 FAENTSKVLLFATNGKFYSLDVGKLPGGRGHGEPIRMFIDLDQDASIVSMFVTKGERKFL 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V +S G  F+V+E + ++NTRKGK  L V++  + + +  VTGD VAV+G N K+++F +
Sbjct: 612 VAASDGQGFVVKEEDCVSNTRKGKQVLNVTAPAEARAICTVTGDQVAVIGTNHKMVVFGL 671

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           DQ+PEM+RG+GVRLQ Y    +SDV  F+  +GL W DSAGR    S  +L  + G R  
Sbjct: 672 DQVPEMARGRGVRLQKYTSAQLSDVTTFEQKQGLAWKDSAGRDQGLSWKELADYRGNRAD 731

Query: 736 VGSLVPKGFPRSGKF 750
            G +  +G P+S KF
Sbjct: 732 AGRIA-QGLPKSNKF 745


>gi|302341705|ref|YP_003806234.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075]
 gi|301638318|gb|ADK83640.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075]
          Length = 834

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/755 (34%), Positives = 400/755 (52%), Gaps = 30/755 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + V +   +   YL YA+S I  RA+PD RDG KPVHRRI+ AM E+  DF   +KKSAR
Sbjct: 9   EDVRIEEEIRRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMRELRNDFNKPYKKSAR 68

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD+LVR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM 
Sbjct: 69  VVGDVIGKYHPHGDSAVYDALVRMAQDFAMRYTLVDGQGNFGSVDGDAAAAMRYTEVRMA 128

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  +L  +D+D VDF D Y+    EPVV P+K P LL NG+SGIAVGMAT+IP HN+ 
Sbjct: 129 KLANELLADIDKDTVDFTDNYDGSLKEPVVLPTKAPALLINGSSGIAVGMATNIPPHNLG 188

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+  A +AL+DNP+I + +L+ ++ GPDFPT G  +   E I ++YR GRG  ++RA+  
Sbjct: 189 EVARALVALLDNPDIGVRELMRHVPGPDFPTRG-FIHGAEGIEQAYRDGRGSIQIRAKAN 247

Query: 258 VEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           +E V       I+VTE+PYQV K+RL+EK+AEL+  K+I  + D+RDES  D   V+F  
Sbjct: 248 IETVARTKKTSIIVTELPYQVNKARLLEKVAELVKDKKIEGISDLRDESDRDGMRVVFDL 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P +++  +F  + M+T F +NM  +     P++M L  +L+ ++ HRRE++ RR+
Sbjct: 308 RRDAVPQVVLNQLFKFTQMQTTFGINMLAID-RGRPRLMGLKDVLELFIEHRREIVLRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILN 433
           +F +   + R  IL+GL IA  N+DE+I +IR    P       +SRFSL+E Q  AIL 
Sbjct: 367 AFDLAKAEARAHILEGLRIALDNLDEVIELIRAAKNPAEAKDGLMSRFSLSEKQAQAILE 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I +E   ++ E  ++  +L S ++    I  E   + E F       
Sbjct: 427 MRLQRLTGLERDKIMAEYREVIKEIARLRHILESDEEVRRIIREETLLLAEEFGD----- 481

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
           +RRT              + MI +E + V +S+ G+I+          +        +  
Sbjct: 482 KRRTEIVGRVSD---IELEDMIAEEEMVVTLSHGGYIKRTPTSLYRAQRRGGKGSRGMAT 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           K+ D ++    A T   +L+ +  G+ Y L    +        G+AI  L+ +  ++ + 
Sbjct: 539 KDEDFVEDLFTASTHSYLLIFTDAGRLYWLKVHEIPQAGRASRGKAIVNLVQMLPDESVS 598

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
           T      +    ++++ + KG     E          G   + ++  + +       G+ 
Sbjct: 599 TVLAVREFVEGRQVIMATQKGVIKKTELMSFSRPRAGGIIAINLAEGDHLVSARLTDGEM 658

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +     + + F   Q+  M R   GV+    +       +   +    T +      
Sbjct: 659 EVFLATRQGQAIRFHESQVRSMGRAAAGVKGIDVEHDDQVVAME-AVAGAPTMLTITENG 717

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + +           R G G +  K   R+G  +S+
Sbjct: 718 FGKRTRMDEYPARNRAGKGVITIKTTTRNGHVVSA 752



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 5/133 (3%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS--- 645
           A    ID+ H+  +V          +L ++  G        E  A  R GK  + +    
Sbjct: 685 AGVKGIDVEHDDQVVAMEAVAGAPTMLTITENGFGKRTRMDEYPARNRAGKGVITIKTTT 744

Query: 646 -SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +   +  +V    D V ++ +  K++   +  I  + R  +GV+L   + G     +  
Sbjct: 745 RNGHVVSALVVGDDDEVMLITDVGKVIRMKVGGISVIGRNTQGVKLIDLEPGERLVAVAR 804

Query: 704 KICEGLTWIDSAG 716
               G   +++  
Sbjct: 805 LAEPGDDEVEAGE 817


>gi|255994574|ref|ZP_05427709.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989]
 gi|255993287|gb|EEU03376.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989]
          Length = 818

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/764 (33%), Positives = 423/764 (55%), Gaps = 29/764 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           ++N +V EN+    +   ++E YL YA+S I  RA+PD+RDG KPVHRRI++ M  +G+ 
Sbjct: 2   DNNKIVGENIIQNEIYSEMKESYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMHNLGIT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                KKSAR VGEV+ K HPHGD S+YD++VR+AQ F  RY L+ G GNFG+I+GD AA
Sbjct: 62  PDKPHKKSARTVGEVMAKYHPHGDSSIYDAMVRMAQDFSIRYMLVDGHGNFGSIEGDGAA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+ +A  +L+ +D+  VDF   +++E+ EP V PS+FP LL NG++GIAVGM
Sbjct: 122 AMRYTEARMSHLALQMLRDIDKKTVDFVPNFDDEEEEPSVLPSRFPQLLVNGSNGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           ATSIP HN+ E+ +A + LID+ E S+E+L + I GPDFPTG  I+  R  I E Y  G+
Sbjct: 182 ATSIPPHNLGEVIDATVKLIDDRETSVEELAKIIKGPDFPTGAKIL-GRAGIREGYLTGQ 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++R+   +E+  +G   +VV+EIPYQV K+RL+EKI EL+  K I  + +IRDE+ +
Sbjct: 241 GKIKIRSTIDIEQTKKGKEQLVVSEIPYQVNKTRLMEKIGELVKEKIIEGISEIRDETNK 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    R  +  +++  ++  + ++    + M  L     P+ + L  IL E++ H
Sbjct: 301 EGIRIVIELKRDANASIVLNKLYKHTSLQESMSMIMIALV-NGEPKKLTLLQILNEYIKH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-VSRFSLTEN 426
           ++E++ RR+ F ++  + R  IL+GL IA  NIDEII IIR+         +  FSL+E 
Sbjct: 360 QKEIVTRRTQFDLEKAENRAHILEGLRIALDNIDEIIKIIRSSYDDAKQKLMDTFSLSEV 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++L  L+ LE  +I++E   L  +      +L++     N I  E+ E+KE +
Sbjct: 420 QTQAILDMKLARLQGLEREKIENEYSELQKKISYYKEILSNEGLLMNVIKEELLEIKEKY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSV 538
           +       RRT   +    D    ++ +IE++ +T+ ++++G+ + +        K    
Sbjct: 480 ADE-----RRTQIVD---DDTNIEEEDLIERKNVTITLTHKGYAKRMDVDEYKTQKRGGK 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            ++ L  +E D +K  ++  T D +L  +  GKA+ + A  +       +   I   ++L
Sbjct: 532 GITGLKTRENDFVKNIINTSTHDDLLFFTNYGKAHKIKAYQIPEATRTAKGIPIINFVNL 591

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  ++I        +     L+ V+S+G    V+ SE  +N + G   +K+   +K+  +
Sbjct: 592 DKTEEITAVIPIDEFREDKYLIAVTSQGLIKKVKLSEFESNRKSGLIAVKLHDGDKLIAI 651

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
            K  G D V +V      + F+ + +    R   GV+  + K G    +    + +G   
Sbjct: 652 EKTNGDDDVLIVTRKGMSIRFNENDVRATGRQSIGVKAITLK-GDDEIISMQLVSKGKEL 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVP--KGFPRSGKFLSS 753
           +  + + Y +        L  RGG G+     K F  +G+   +
Sbjct: 711 LVVSKKGYGKRTGTDKYTLQTRGGKGNKTYDNKKFDVTGELTGA 754



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 63/484 (13%), Positives = 159/484 (32%), Gaps = 25/484 (5%)

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              + A    E        I+   I +Q +      +        R  +LE +R      
Sbjct: 333 SMIMIALVNGEPKKLTLLQILNEYIKHQKEIVTRRTQFDLEKAENRAHILEGLRIALDNI 392

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW--LA 366
             I+   ++   D    +   F LS+++T+  L+M +  +  + +    +   +    ++
Sbjct: 393 DEIIKIIRSSYDDAKQKLMDTFSLSEVQTQAILDMKLARLQGLEREKIENEYSELQKKIS 452

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           + +E+L           +  +EI +          +I+    N ++   +     ++T  
Sbjct: 453 YYKEILSNEGLLMNVIKEELLEIKEKYADERR--TQIVDDDTNIEEEDLIERKNVTITLT 510

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI- 485
                  + +   +  +                  + +  S            +  K   
Sbjct: 511 HKGYAKRMDVDEYKTQKRGGKGITGLKTRENDFVKNIINTSTHDDLLFFTNYGKAHKIKA 570

Query: 486 FSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
           +         +          + +    A +      ++   + ++++G I+ +K     
Sbjct: 571 YQIPEATRTAKGIPIINFVNLDKTEEITAVIPIDEFREDKYLIAVTSQGLIKKVKLSEFE 630

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 L A+   +GD L      +  D +L+++  G +      ++ +       +   
Sbjct: 631 SNRKSGLIAVKLHDGDKLIAIEKTNGDDDVLIVTRKGMSIRFNENDVRATGRQSIGV-KA 689

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE----- 648
           I L  + +I++  +     +LLVVS KG        +    TR GK      +++     
Sbjct: 690 ITLKGDDEIISMQLVSKGKELLVVSKKGYGKRTGTDKYTLQTRGGKGNKTYDNKKFDVTG 749

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
           ++   + V   D + ++  +  ++     +IP +SR  KGVR+    +      +   + 
Sbjct: 750 ELTGALIVDEEDDIMLINSDGIVIRIKAKEIPNLSRATKGVRIMKVGEDANIISLAKVMN 809

Query: 707 EGLT 710
           E  +
Sbjct: 810 EEDS 813


>gi|149002587|ref|ZP_01827519.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|147759198|gb|EDK66191.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69]
          Length = 787

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMK 651
           ++L     +V A +     ++L+++ KG       +E     R GK     K++ +  + 
Sbjct: 689 VNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLL 748

Query: 652 LVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
             +      + + ++ +   ++  ++  I +  R   GV
Sbjct: 749 AGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGV 787


>gi|52424913|ref|YP_088050.1| DNA gyrase subunit A [Mannheimia succiniciproducens MBEL55E]
 gi|52306965|gb|AAU37465.1| GyrA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 888

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/814 (30%), Positives = 390/814 (47%), Gaps = 73/814 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M++ G  +  
Sbjct: 2   TELVQDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMNQSGNTYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++ KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  SYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P+LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQRITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPSLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA +DN +ISI++L+++I GPDFPT   ++  R  I E+Y+ GRG  
Sbjct: 182 IPPHNLGEVMDGCLAYMDNEDISIDELMQFIPGPDFPTAA-LINGRRGIEEAYKTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   I++TEIPYQV K++L+EKI EL+  K+I  +  + D S ++  
Sbjct: 241 YVRAKASVEINDKGREQIIITEIPYQVNKAKLVEKIGELVRDKKIEGIAGVLDLSNKEGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++ HRRE
Sbjct: 301 RLEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDH-GQPRLFNLKQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ + ++    R  IL+GL IA  NID +I +IR                      
Sbjct: 360 VVTRRTVYELRKARERAHILEGLAIALANIDPVIELIRASKTADEARENLLSRAWSLGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPDGLAAELGAHDGQYFLSETQARAILELRLHRLTGLEHEKIVEEYHE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +L S  +    I  E+  VK  ++          +         A     
Sbjct: 480 ILLQIGELIRILTSSVRLNEVIREELELVKSTYNDERRTEITAASGDINLEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEDDFIERLLVANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L        G  I  ++ L  N+ I        YD    +++ ++ G       
Sbjct: 600 WLKVYQLPEASRGARGRPIVNILPLEDNERITAILPVASYDEDKFVVMATACGIVKKTAL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E       G   + +  E+++  V    G + + +     +++ F+   +  M R   G
Sbjct: 660 TEFSRPRANGIIAVNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAEAAVRAMGRTATG 719

Query: 687 VRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGRSY 719
           VR                               D  I  V+   I +     + +    Y
Sbjct: 720 VRGIKLALTNDISDDESAVEIEEISDDNAEDTLDLNIDKVVSLVIPKNEGAILTATQNGY 779

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           R   G +  K   R+GK +++
Sbjct: 780 GKRTALNEYPTKSRNTKGVISIKVSERNGKVVAA 813



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  +  +   +L  +  G       +E    +R  K  + +       K+    
Sbjct: 755 NIDKVVSLVIPKNEGAILTATQNGYGKRTALNEYPTKSRNTKGVISIKVSERNGKVVAAT 814

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V   D + ++ +   L+   + ++  + R  +GVRL    +      +
Sbjct: 815 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHVVSL 863


>gi|167770846|ref|ZP_02442899.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM
           17241]
 gi|167666886|gb|EDS11016.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM
           17241]
          Length = 857

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/766 (30%), Positives = 396/766 (51%), Gaps = 33/766 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              L+E+ +  V +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ + E GL  
Sbjct: 16  DPVLIEQRIHNVDIEHEMKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTP 75

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++K A  VG V+G+ HPHGD SVYD++VRLAQ F  RYPL+ G GNFG++DGD  AA
Sbjct: 76  DKPYRKCADTVGSVLGRYHPHGDASVYDAMVRLAQDFSMRYPLVDGHGNFGSVDGDPPAA 135

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           YRYTE+RM++++  +L  ++++ VDF   Y++   EP V PS+FPNLL NG++GIAVGMA
Sbjct: 136 YRYTESRMSKMSLSMLTDIEKETVDFTGNYDDRLQEPTVLPSRFPNLLCNGSTGIAVGMA 195

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +A   LIDNP+  +++++++I GPDFPTGG ++  R  I  +Y  GR 
Sbjct: 196 TNIPPHNLGEVIDAVNLLIDNPDAGLDEIMQHIKGPDFPTGG-VIMGRAGIRAAYATGRA 254

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RAR  +EE+  G   IVVTEIPY V K+RLIE IA+L+  KRI  + D+RDES  D
Sbjct: 255 RLTLRARTEIEEMANGRERIVVTEIPYMVNKARLIESIADLVKDKRIDQISDLRDESDRD 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  +  +++  ++  S ++    + M  L  G VP+VMPL  +L  ++  +
Sbjct: 315 GMRIVIELKRDANAQVVLNRLYSYSQLQDTVGVIMLALV-GGVPKVMPLKDVLTHYIDFQ 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTE 425
            E++ RR+ + ++    R  IL+GL +   N DE+I+IIR+        V+   RF +T+
Sbjct: 374 GEIVTRRTKYDLRRAKEREHILEGLKLVCDNTDEVISIIRHSKDRPDSKVNLIARFGITD 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AI+ ++L  L  LE  +I+ EL  +L   ++ +++L    +  + +  E+  ++  
Sbjct: 434 IQATAIVAMQLGQLSGLERIRIEEELAKILERVKEYEAILGDYTRVMSIVKEELGVLRAK 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
           ++       RRT              + +I  E   + +++ G+++     +        
Sbjct: 494 YADE-----RRTEIV---AVSGEVDIEDLIPVEDCVITLTHFGYLKRQPVDAYRTQRRGG 545

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
             +S +  +E D ++      T D I+  ++ G+ + L    +        G  I  L+ 
Sbjct: 546 RGVSGMTRREEDFVEELFICSTHDFIMFFTSKGRCFRLKGYEISEGSRTSRGTNIVNLLS 605

Query: 596 LNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ ++ +                 L++V+ KG              R G   + +   ++
Sbjct: 606 MDSDEKVTALIKVTPDEYEREDRCLVMVTRKGIIKRTPLGAYKNVRRMGLIAIGLDDGDE 665

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKIC 706
           +  V +  G   + +  +N   + F       +SR  +GV+  + +DG  +  +   +  
Sbjct: 666 LAWVRQTDGTSELIIATKNGMAIRFDEQDARPLSRTARGVKAITLEDGDEVVGMARVRKE 725

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            G T +  +     R        L  RGG G        ++G    
Sbjct: 726 SGATLLTVSESGLGRRTEVSQYRLQSRGGKGIRNYYV-DKNGPVAG 770


>gi|89094106|ref|ZP_01167049.1| DNA gyrase subunit A [Oceanospirillum sp. MED92]
 gi|89081581|gb|EAR60810.1| DNA gyrase subunit A [Oceanospirillum sp. MED92]
          Length = 866

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/794 (33%), Positives = 416/794 (52%), Gaps = 64/794 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G D+  A+
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM +++  +L  ++++ VDF D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMDKISHELLADLEKETVDFVDNYDGTEKIPAVLPNRVPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    +ALI+N ++S++ L+E+I GPDFPTGG I+  R  I+++YR GRG   V
Sbjct: 184 PHNLSEVVRGCIALIENSDLSVDDLMEFIPGPDFPTGG-IINGRAGILQAYRTGRGRIYV 242

Query: 253 RARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA+  VEE    G   +++TEIPYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   
Sbjct: 243 RAKHHVEEDQKSGKASLIITEIPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R   PD+++ ++F  + ME+ F +NM  L     P+++ L   L+ ++ HRREV
Sbjct: 303 IVIELRRGEMPDVVINNLFAQTQMESVFGINMVALVD-GQPKILDLKTALECFIRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419
           + RR+ + ++    R  IL+GL +A  NID +I +I+    P                  
Sbjct: 362 VTRRTVYLLRKARERGHILEGLAVALANIDPVIELIKTSPTPAEAKERLIAEAWTPGDVI 421

Query: 420 -------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                    +++L+  Q  AIL LRL  L  LE  ++ +E   L
Sbjct: 422 QMLERAGEDACRPEDLEEQYGLREGKYNLSPAQAQAILELRLHRLTGLEHEKLIAEYKEL 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L    ++  +L S ++    I  E+  + E +        RRT   E++ + K      +
Sbjct: 482 LERIAELLKILGSHERLMEVIREELEAILEEYGDE-----RRT---EITASRKDLTVADL 533

Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I +E + V IS+ G+         +S +      SA   K+ D ++  L A+T D IL  
Sbjct: 534 ITEEDMVVTISHGGYAKTQPLTDYQSQRRGGKGKSAAAIKDEDFIEHLLIANTHDTILCF 593

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           +  GK Y L    +   S    G  I  ++ L+  + I T      Y+    + + ++ G
Sbjct: 594 TDRGKVYWLRVFEIPVASRTARGRPIVNILPLDEGERISTILPVGGYEEDKFIFMATASG 653

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE 680
                  +        G   L +  ++ +       G D V ++    K + F  + +  
Sbjct: 654 TVKKTALTNFSRPRASGLIALDLLDDDHLIGAAITNGEDDVMLMTSAGKSMRFREEDVRP 713

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           M R  +GVR     DG +  +      EG   + ++   Y +        +  RGG G +
Sbjct: 714 MGRTARGVRGVKMDDG-VKVISLIIPQEGGKILTASENGYGKKTAVDDFPVKGRGGQGVI 772

Query: 740 VPKGFPRSGKFLSS 753
             +   R+G    +
Sbjct: 773 AQQCSDRNGSLAGA 786



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/353 (11%), Positives = 103/353 (29%), Gaps = 22/353 (6%)

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            +  E     ++ R       +   + +++   +     A  +     +         + 
Sbjct: 512 EYGDERRTEITASRKDLTVADLITEEDMVVTISHGG--YAKTQPLTDYQSQRRGGKGKSA 569

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
             +     +    +    +  +       +      +  + S   +   I   +      
Sbjct: 570 AAIKDEDFIEHLLIANTHDTILCFTDRGKVYWLRVFEIPVASRTARGRPIVNIL------ 623

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
                D G R +T   V   ++                +         +  +  L AL  
Sbjct: 624 ---PLDEGERISTILPVGGYEEDKFIFMATASG----TVKKTALTNFSRPRASGLIALDL 676

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            + D L  A   +  D ++L+++ GK+      ++         ++  + ++    +++ 
Sbjct: 677 LDDDHLIGAAITNGEDDVMLMTSAGKSMRFREEDVRPMGRTARGVRG-VKMDDGVKVISL 735

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHV 661
            +     K+L  S  G        +     R G+  +       +      V    GD V
Sbjct: 736 IIPQEGGKILTASENGYGKKTAVDDFPVKGRGGQGVIAQQCSDRNGSLAGAVQVFDGDDV 795

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWI 712
            ++ +   L+    D+I E+ R  +GV L    D   +  V   +  E    +
Sbjct: 796 MLISDQGTLVRTGGDEISELGRNTQGVTLIRVADDERLVSVARIEEPEEDELL 848


>gi|148549153|ref|YP_001269255.1| DNA gyrase subunit A [Pseudomonas putida F1]
 gi|148513211|gb|ABQ80071.1| DNA gyrase subunit A [Pseudomonas putida F1]
          Length = 919

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/838 (30%), Positives = 413/838 (49%), Gaps = 108/838 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE++I++L+++I GPDFPT G I+  R+ I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPEVTIDELMQFIPGPDFPTAG-IINGRQGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVD-GRPRLLNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL+LRL  L  LE  ++ +E   
Sbjct: 422 QVMVERAGADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +L+S ++    I  E+  ++  +        RRT       A        
Sbjct: 482 ILEQIGELIRILSSAERLMEVIREELEAIRAEYGD-----VRRTEIL---NASHDLNYGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           MI +E   V IS+ G+         ++ +      SA   K+ D ++  L A++   +LL
Sbjct: 534 MIPEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD-------------- 609
            S+ GK Y      +        G  +  L+ L   + I      D              
Sbjct: 594 FSSKGKVYWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEEL 653

Query: 610 --------------------------------STCKLLVVSSKGNAFIVEESEIIANTRK 637
                                           +   + + ++ G        +       
Sbjct: 654 DEADDTVLEGELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSN 713

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   LK+   + +       G   V +  +  K++ F+   + EM R  +GVR      G
Sbjct: 714 GLIALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRNARGVRGMKLGKG 773

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +      G   + ++ R + +           RGG G +      R+G  + +
Sbjct: 774 QRIISMLI-PESGSQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGA 830



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +++ S  GK     A +++   G        + L   Q I++  + +S  ++L  S +G 
Sbjct: 738 VMMFSDAGKVIRF-AESVVREMGRNARGVRGMKLGKGQRIISMLIPESGSQILTASERGF 796

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK--LVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 S+     R   G   +       +    +    G+ + ++ +   L+   + ++
Sbjct: 797 GKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEV 856

Query: 679 PEMSR-GKGVRLQSYKDGG 696
             +SR  +GV L       
Sbjct: 857 SSLSRNTQGVTLIKLAADE 875


>gi|311747258|ref|ZP_07721043.1| DNA gyrase, A subunit [Algoriphagus sp. PR1]
 gi|126578969|gb|EAZ83133.1| DNA gyrase, A subunit [Algoriphagus sp. PR1]
          Length = 852

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/757 (31%), Positives = 395/757 (52%), Gaps = 21/757 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            EN+  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRRI+  M E+G+      K
Sbjct: 6   NENIIPINIEEEMRGAYIDYSMSVIVSRALPDVRDGMKPVHRRILFGMQELGVLHNKPHK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD +VYD++VR+AQP+  RY L+ GQGNFG+IDGD+ AA RYTE
Sbjct: 66  KSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQLVDGQGNFGSIDGDNPAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++AE +L  +++D VD++  +++   EPVV P+K P LL NG SGIAVGMAT++  
Sbjct: 126 ARLKRIAEEMLVDINKDTVDYQFNFDDSLKEPVVLPAKVPALLLNGASGIAVGMATNMAP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+    +A I+N EI+I +L+EY+I PDFPTGG I+     +  ++  GRG   +R
Sbjct: 186 HNLGEVISGIIAYIENREITIPELMEYVIAPDFPTGG-IIYGYNGVKAAFETGRGRIVMR 244

Query: 254 ARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
            +  +E    G+   IV+TEIPY V K+ ++EK A+LI  K+I  +  IRDES      +
Sbjct: 245 GKANIETKDGGNKEMIVITEIPYLVNKASMVEKTAQLINEKKIDGISAIRDESDRSGMRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           ++   R   P +++ +++  + ++T F +N   L     P  + L  ++  ++ HR EV+
Sbjct: 305 VYELKRDAIPSVILNNLYKHTQLQTSFSVNNVALVK-GRPYTLNLKDLIVHYVDHRHEVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
            RR+ + ++  ++R  IL+G LIA  ++DE+I++IRN   P+        RF L+E Q  
Sbjct: 364 IRRTQYELKEAEKRAHILQGYLIALDHLDEVISLIRNSADPETARNGLIERFDLSEIQAR 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  +E  +I  E   ++A  E++  +L +  ++   I  E+ E+K+ ++  
Sbjct: 424 AILDMRLQRLTGMEREKIIQEYKEIMALIEELKEILENEDKRMEIIKTELTEMKDRYADD 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                                +  +       V  +     R+     V    +  KE D
Sbjct: 484 RRTEIEHNAEDFSYEDMIPNEEVIITVSHQGYVKRTALTEYRTQGRGGVGSRGVSTKEDD 543

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV 607
             +    A T + +L+ +  GK + L A  +  G    +   IQ LI++  +  I +   
Sbjct: 544 FTEYLFTASTHNYLLIFTDQGKLFWLKAYAIPEGNKTSKGRPIQNLINIQSDDRIRSIIQ 603

Query: 608 YDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +            L++V+ KG        +       G   L +  ++++  V    GD
Sbjct: 604 VNDLNDADYINNHFLVMVTKKGVIKKTTLEQYSRPRTNGIIALNIREDDQLVNVKMTNGD 663

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGLTWIDSA 715
            H+ +  ++ + + F    +  M R   GV+  +   +D  +  ++C    +  T +  +
Sbjct: 664 QHIVIAAKSGRAIHFPETAVRPMGRTATGVKAITLTGQDDFVIGMVCAS-EDTATLLVVS 722

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +        +  RGG G        ++G  ++
Sbjct: 723 ENGYGKRSYLNEYRITNRGGKGVKAMNVTDKTGALVA 759



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/472 (11%), Positives = 129/472 (27%), Gaps = 16/472 (3%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           ++ IV            R ++ ++E  + +  +    I        +             
Sbjct: 349 KDLIVHYVDHRHEVVIRRTQYELKEAEKRAHILQGYLIALDHLDEVISLIRNSADPETAR 408

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             L +  D S    R +L  + + L      + I    ++         +L        +
Sbjct: 409 NGLIERFDLSEIQARAILDMRLQRLTGMEREKIIQEYKEIMALIEELKEILENEDKRMEI 468

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
               + +    +  +                +   + ++I   +   +      E + + 
Sbjct: 469 IKTELTEMKDRYADDRRTEIEHNAEDFSYEDMIPNEEVIITVSHQGYVKRTALTEYRTQG 528

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
                      + D        +           +        +       +   +   I
Sbjct: 529 RGGVGSRGVSTKEDDFTEYLFTASTHNYLLIFTDQGKLF--WLKAYAIPEGNKTSKGRPI 586

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
              I              R R+        D   +    +       VI      +  + 
Sbjct: 587 QNLINI--------QSDDRIRSIIQVNDLNDADYINNHFLVMVTKKGVIKKTTLEQYSRP 638

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
            +  + AL+ +E D L      +    I++ +  G+A   P   +         ++ +  
Sbjct: 639 RTNGIIALNIREDDQLVNVKMTNGDQHIVIAAKSGRAIHFPETAVRPMGRTATGVKAITL 698

Query: 596 LNHNQDIVTAFVYDST-CKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKL 652
              +  ++           LLVVS  G       +E     R GK    + V+ +    +
Sbjct: 699 TGQDDFVIGMVCASEDTATLLVVSENGYGKRSYLNEYRITNRGGKGVKAMNVTDKTGALV 758

Query: 653 VVK--VTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
            +K     D + ++ ++  ++  S+D +  M R  +GVRL    D      +
Sbjct: 759 AIKEVTDADDLMIINKSGIIIRISMDTLRIMGRATQGVRLIKVGDSDQISSV 810


>gi|20530727|gb|AAM27206.1|AF503576_1 DNA gyrase GyrA [Streptococcus pneumoniae]
          Length = 822

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|302346561|ref|YP_003814859.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845]
 gi|302150295|gb|ADK96556.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845]
          Length = 859

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/773 (29%), Positives = 383/773 (49%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNPEIS + L+E+I  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E       IVVTEIPY V K +LIE IA+L+   ++  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEI-ESDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALV-AGRPRLLSLRECIKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  IL+ L+ A  NIDE++ IIR    P     +   RF 
Sbjct: 358 EHRHDVTIRRAQFDLKKAQERAHILEALIKACDNIDEVVRIIRASKTPSDAQRNLEKRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
             E Q  AI+++RL  L  L   Q+  E + L+   + +  +LN+ ++    +  E++EV
Sbjct: 418 FDELQSRAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERCKEVMKEELQEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE +        RRT              +     +P+ + IS+ G+I+           
Sbjct: 478 KEKYGD-----VRRTEIIPDEHE---FNAEDFYPNDPVVITISHLGYIKRTPLADFKEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       +E D  +    A     +L  +  G+ Y +   ++  G  + +  AIQ 
Sbjct: 530 RGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++ L     +             +  +  ++  + +G                G   + +
Sbjct: 590 MLSLEPGDSVNAFLRIQGLDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISD 699
           +  +++  V    G + + +   N +   F    I  M R   GVR     + G   +  
Sbjct: 650 NEGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTMGRVSTGVRGMRLDEDGQDEVVG 709

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +I        T +  +   Y +        L  RGG G        ++GK ++
Sbjct: 710 MIVVNDPVNETVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNITDKTGKLVA 762



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 94/272 (34%), Gaps = 17/272 (6%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             + +  +           +  D        +   I   +        +  D        
Sbjct: 552 ATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQNMLSL------EPGDSVNAFLRI 605

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
             +   D       +   +   V  ++       +++   + A++  EGD +      + 
Sbjct: 606 QGLDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTN--GVIAININEGDEVVDVRLTNG 663

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDS--TCKLLV 616
            + +++   +G+A      N+ +       ++ + +D +   ++V   V +      ++V
Sbjct: 664 HNELIIADRNGRACRFDESNIRTMGRVSTGVRGMRLDEDGQDEVVGMIVVNDPVNETVMV 723

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLI 672
           VS +G     +  +     R GK    ++  +K   +  +  VT D  + ++ ++  ++ 
Sbjct: 724 VSEEGYGKRSQVEDYRLTNRGGKGVKTLNITDKTGKLVAIKNVTDDNDLMIINKSGIVIR 783

Query: 673 FSIDQIPEMSRG-KGVRLQSY-KDGGISDVIC 702
            S+ +   M R  +GVRL +  K   +   +C
Sbjct: 784 MSVAECRVMGRATQGVRLINLAKKNDVIASVC 815


>gi|73916140|gb|AAZ92938.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIA 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|167032370|ref|YP_001667601.1| DNA gyrase subunit A [Pseudomonas putida GB-1]
 gi|166858858|gb|ABY97265.1| DNA gyrase, A subunit [Pseudomonas putida GB-1]
          Length = 921

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/838 (30%), Positives = 414/838 (49%), Gaps = 108/838 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNP+++I++L+++I GPDFPT G I+  R+ I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPDVTIDELMQFIPGPDFPTAG-IINGRQGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVD-GRPRLLNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL+LRL  L  LE  ++ +E   
Sbjct: 422 QVMVERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +L+S ++    I  E+  ++  +  +     RRT       A        
Sbjct: 482 ILEQIGELIRILSSAERLMEVIREELEAIRAEYGDA-----RRTEIL---NASHDLNYGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           MI +E   V IS+ G+         ++ +      SA   K+ D ++  L A++   +LL
Sbjct: 534 MIPEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD-------------- 609
            S+ GK Y      +        G  +  L+ L   + I      D              
Sbjct: 594 FSSKGKVYWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEEL 653

Query: 610 --------------------------------STCKLLVVSSKGNAFIVEESEIIANTRK 637
                                           +   + + ++ G        +       
Sbjct: 654 EEADDTVLEGELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSN 713

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   LK+   + +       G   V +  +  K++ F+   + EM R  +GVR      G
Sbjct: 714 GLIALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRNARGVRGMKLGKG 773

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +      G   + ++ R + +           RGG G +      R+G  + +
Sbjct: 774 QRIISMLI-PESGSQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGA 830



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +++ S  GK     A +++   G        + L   Q I++  + +S  ++L  S +G 
Sbjct: 738 VMMFSDAGKVIRF-AESVVREMGRNARGVRGMKLGKGQRIISMLIPESGSQILTASERGF 796

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK--LVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 S+     R   G   +       +    +    G+ + ++ +   L+   + ++
Sbjct: 797 GKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEV 856

Query: 679 PEMSR-GKGVRLQSYKDGG 696
             +SR  +GV L       
Sbjct: 857 SSLSRNTQGVTLIKLAADE 875


>gi|167755160|ref|ZP_02427287.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402]
 gi|237733417|ref|ZP_04563898.1| DNA gyrase subunit A gyrA [Mollicutes bacterium D7]
 gi|167705210|gb|EDS19789.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402]
 gi|229383452|gb|EEO33543.1| DNA gyrase subunit A gyrA [Coprobacillus sp. D7]
          Length = 819

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/764 (31%), Positives = 408/764 (53%), Gaps = 36/764 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ V L   ++  ++ YA+S I  RA+PD+RDG KPV RRII+ MS++G   G  
Sbjct: 1   MEERGIRKVKLTSEMKNSFMQYAMSVIVSRALPDVRDGLKPVQRRIIYGMSDLGCTPGTP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD S+Y++LVR+AQ F  RY L+ G GNFG+IDGD AAA RY
Sbjct: 61  YKKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  +++ + ED +DF   Y+ E+ EP V P++ PNLL NG++GIAVGMAT+I
Sbjct: 121 TEARMSKISSELVRDLKEDTIDFIPNYDGEEQEPAVLPARIPNLLINGSTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN+ E+ EA LA+  +P+I+I + +  YI GPDFPTGG I+  + +I ++Y  G G  
Sbjct: 181 PPHNLVEVIEAILAVAKDPDITIMELMENYIQGPDFPTGGYIL-GKTAIKKAYETGNGLI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  + E       IVVTEIPY V K+R+IEK+++L+  K+I  + +IRDES  D  
Sbjct: 240 VMRAKTEI-EEKGSKKVIVVTEIPYMVNKARMIEKMSQLVREKKIEGITEIRDESNRDGI 298

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R + P++++  ++ L+ ++T F  N   L     P+ + L  ++  +L H+ E
Sbjct: 299 RVVIELRRDIQPEVILNQLYKLTSLQTTFGANCIALV-NNEPKTLNLKEMITLYLDHQEE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR+   + R  IL+GL  A   ID II +IR+       +  ++  F++++ Q
Sbjct: 358 VIKRRTKFRLTKAEDRAHILEGLKRALDQIDAIIDLIRSSRTTEIIQTRLMEEFNMSDKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI  ++L+ L  LE  +I+ +L+ LL     +  +L + ++  + I  E+ E+K+ + 
Sbjct: 418 AKAIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDILENRERLLSIIHDELEEIKDKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                 +RRT   +          + +I  E + + ++N G+++ +   +          
Sbjct: 478 D-----KRRTEIIQ---GTFDLEDEDLIPVEDVIISLTNNGYVKRMPVDTYKTQNRGGRG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +     D +   ++  T D +L  +  GK Y L   N+       +   +  L++L+
Sbjct: 530 IKGMATNSDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFGRSAKGLPVVNLLNLD 589

Query: 598 HNQDIVTAFVY-------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + + +           ++   L  V++ G    V  +E     + GK  + +  ++++
Sbjct: 590 KEEQVKSMISINRKQIEENNDYYLFFVTASGLVKRVHINEFERIRQSGKIAISLRDDDQL 649

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V    G D + +   N KL+ F    +  M R   GV+  +     +  +      EG
Sbjct: 650 VSVKLTGGNDQILIAASNGKLVRFEETNVRPMGRSASGVKGINVDGSEVIGMTT--DKEG 707

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    R Y +        L  RGG G        R+G+ ++
Sbjct: 708 KYIMVVTERGYGKMSPLEEYRLSNRGGKGVKTINATERNGQIVA 751



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 83/218 (38%), Gaps = 14/218 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVI-SNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
           E  ++  +  ++ + E     +   +  G ++ +  +           A+  ++ D L  
Sbjct: 592 EQVKSMISINRKQIEENNDYYLFFVTASGLVKRVHINEFERIRQSGKIAISLRDDDQLVS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  D+IL+ +++GK       N+        +    I+++ ++ ++          
Sbjct: 652 VKLTGGNDQILIAASNGKLVRFEETNVRPMGRSA-SGVKGINVDGSE-VIGMTTDKEGKY 709

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRK 669
           ++VV+ +G   +    E   + R GK    +++ E+   +  +  V GD  + ++ ++  
Sbjct: 710 IMVVTERGYGKMSPLEEYRLSNRGGKGVKTINATERNGQIVALRAVNGDEDLLIITDDGI 769

Query: 670 LLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
           ++   ++Q+    R  +GVRL           +     
Sbjct: 770 MIRLPMEQVKTAGRATQGVRLIKVNAENKVSSVEVVEK 807


>gi|225856887|ref|YP_002738398.1| DNA gyrase subunit A [Streptococcus pneumoniae P1031]
 gi|225726307|gb|ACO22159.1| DNA gyrase, A subunit [Streptococcus pneumoniae P1031]
 gi|301794303|emb|CBW36728.1| DNA gyrase subunit A [Streptococcus pneumoniae INV104]
          Length = 822

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIA 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|241895512|ref|ZP_04782808.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
 gi|241871258|gb|EER75009.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
          Length = 858

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/757 (29%), Positives = 381/757 (50%), Gaps = 16/757 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                   +K+  L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+  
Sbjct: 3   EEEQTNSRIKSAKLGEQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTP 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA
Sbjct: 63  DKQHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDPAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR++++A  +L+ +++D +DF++ Y+  D EPVV P++FPNLL NG +GIAVGMA
Sbjct: 123 MRYTEARLSKIATEMLRDINKDTIDFQENYDGTDREPVVLPARFPNLLVNGANGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+      L+ NP+++  +L+E I GPDFPTG  IV  +  I ++Y  G+G
Sbjct: 183 TNIPPHNLGEVISGLHMLMKNPDVTTAELMEAIPGPDFPTGA-IVMGKSGIRKAYETGKG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +E    G   I+VTE+PY V K++LIE+IAEL   KRI  +  + DES ++
Sbjct: 242 VVTVRAKTEIETEKSGKEHIIVTELPYMVNKAKLIERIAELGRDKRIEGITGVNDESDQE 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R +   +++ +++  + M+T F  NM  +     P+++ L  +L  +L H+
Sbjct: 302 GNRIAIEIRRDVSASVVLNNLYKNTLMQTGFSFNMLAVQD-GRPKLLSLKDMLVAYLDHQ 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTE 425
           ++V+ RR+ F ++    R  IL+GL IA  +ID II IIR+ +     K  ++  ++L++
Sbjct: 361 QKVVRRRTEFELRKAQARAHILEGLRIALDHIDAIINIIRHSETSEIAKQKLMVDYALSD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  LE  +I+ E   LL        +L   ++    I  E+ EV+  
Sbjct: 421 KQSQAILDMRLVRLTGLERDKIEKEYQGLLTAIADFQDILAKPERIDEIIYTELLEVQSK 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALH 544
           +        +      +   D    +  ++       +    +   R+       +  + 
Sbjct: 481 YGDERRTELQIGDVTSIEDEDLIEEEDIIVSLTHAGYIKRMLQSEFRAQNRGGRGIQGMG 540

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             + D +   +   T D +L  +  GK Y +    +       +   +  L+ +   + I
Sbjct: 541 VNDDDFIDELIGTSTHDTLLFFTNSGKVYKMKGYEVPEYGRTAKGIPVVNLLGIESGESI 600

Query: 603 VTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            T         +S+  L   + +G       +E       G   + +   +++  V+   
Sbjct: 601 QTVINVRGDASESSDYLFFTTRQGVVKRTPVNEFGNIRAHGLKAINLHDGDELINVLVTD 660

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           GD  + +       + F+ + +  M R   GVR  + +      V    + +    +   
Sbjct: 661 GDQNIIIGTHGGYAVSFNSEAVRSMGRSAAGVRGITLRPDDYV-VGAQVLIDNGHVLIIT 719

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG G    +   ++G    
Sbjct: 720 EKGYGKQTPVDQYPIKGRGGKGIKTAQVTEKNGPLAG 756



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 69/217 (31%), Gaps = 17/217 (7%)

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALH-----FKEGDSLKIALHAHTTDRILLLSTDG 570
           E        + +G ++    +       H             I +     D+ +++ T G
Sbjct: 612 ESSDYLFFTTRQGVVKRTPVNEFGNIRAHGLKAINLHDGDELINVLVTDGDQNIIIGTHG 671

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                     +   G   A    I L  +  +V A V      +L+++ KG        +
Sbjct: 672 GYAVSFNSEAVRSMGRSAAGVRGITLRPDDYVVGAQVLIDNGHVLIITEKGYGKQTPVDQ 731

Query: 631 IIANTRKGKTFLKV---SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-K 685
                R GK             +  +  V G + + +      ++ F++D I E  R  +
Sbjct: 732 YPIKGRGGKGIKTAQVTEKNGPLAGLKVVDGSEDIMLTTNKGVMIRFTVDSISETGRATQ 791

Query: 686 GVRLQSYKDG-------GISDVICFKICEGLTWIDSA 715
           GVR+    D         +  V+  ++ +  T +  A
Sbjct: 792 GVRVIRLDDDSAVATFAKVEHVVAEEVDDEDTDLSEA 828


>gi|218283251|ref|ZP_03489312.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989]
 gi|218216006|gb|EEC89544.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989]
          Length = 822

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/765 (34%), Positives = 414/765 (54%), Gaps = 32/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +   N    + V+ V +   +   +L Y++S I  RA+PD+RDG KPVHRRI+HAM+++G
Sbjct: 1   MEEENKRY-DYVEDVEISKEMRTAFLDYSMSVIVSRALPDVRDGMKPVHRRILHAMNQLG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +  G A KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RYPL+ G GNFG++DGD 
Sbjct: 60  ITSGVAHKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYPLVDGHGNFGSLDGDG 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + +D VDF   Y+ E++EPVV PS+ PNLL NG  GIAV
Sbjct: 120 AAAMRYTEARMSKISMEMMRDIQKDTVDFIPNYDGEENEPVVLPSRIPNLLINGAVGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E  +A  A++DNP+I++ +L+E I GPDFPTGGII+  R+ I +++  
Sbjct: 180 GMATNIPPHNLSETIQAIFAVMDNPDITVPQLMEVIKGPDFPTGGIIL-GRKGIRQAFET 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R+++ VEE+  G   I+  EIPYQV K+ LI K+A LI  K I  +  + DES
Sbjct: 239 GRGSIMIRSKYRVEELTNGKKQIIFYEIPYQVNKANLITKMASLIRDKAIQGVTYLNDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    +    ++++  +F L+ ++T F +NM  L     P+ +PL  I+ +++
Sbjct: 299 NREGIRIVMELKKDAQEEVILNQLFRLTPLQTSFGINMLAL-ENGRPKQLPLKDIIHDYI 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSRF 421
            H+ +V+ R++ F ++    R  IL+GL IA  +IDE+I +IR+  K +      +   F
Sbjct: 358 DHQVDVVVRKTQFELKKAQDRAHILEGLRIAMDHIDEVIHMIRSSKKDEAGLSQDLCDAF 417

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+  Q  AIL ++LR L  LE  +I++E   LL   E +  +L +  +    I  ++ E
Sbjct: 418 GLSMIQAKAILAMQLRRLSGLERDKIENEYQQLLLTIEDLKDILANHDRVLQIIRDDLNE 477

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           + + +        RRT   +   A      + +I  E + + ++  G+I+          
Sbjct: 478 IDQKYGDE-----RRTEISD---ASVDMEDEDLIPVEDVIITLTESGYIKRQLVDTYRAQ 529

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
                 + +L   E DS+   +   T D +LL +  G+ Y L   N+ SG    +   I 
Sbjct: 530 NRGGRGIKSLTLNEEDSIDTMISMSTHDFLLLFTDKGRVYRLKGYNVPSGSRTSKGIPIV 589

Query: 592 LLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+ L   + +   V     D +  LL V+  G       SE     R GK  + +  ++
Sbjct: 590 NLMTLEKGEKVNVLVAVPKDDESETLLFVTKNGIVKRTSVSEFENINRNGKIAISLKPDD 649

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +++ V   TG D V + G N K + F+ DQ+  M R   GV   +    G   V      
Sbjct: 650 ELRFVKLTTGQDEVIISGSNGKAVRFNEDQVRIMGRSASGVLGFNC--DGSEVVGAALSS 707

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           EG T +  +   Y +        L  RG  G        ++GK +
Sbjct: 708 EGDTVLVVSENGYGKRSKFEDYRLTSRGKKGVSTINITEKTGKLM 752



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 70/188 (37%), Gaps = 7/188 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++           +     A+  K  D L+        D +++  ++GKA      + + 
Sbjct: 623 IVKRTSVSEFENINRNGKIAISLKPDDELRFVKLTTGQDEVIISGSNGKAVRFN-EDQVR 681

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKT 640
             G   +  L  + + ++ +  A        +LVVS  G     +  +    +  +KG +
Sbjct: 682 IMGRSASGVLGFNCDGSEVVGAALS-SEGDTVLVVSENGYGKRSKFEDYRLTSRGKKGVS 740

Query: 641 FLKVSSE-EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            + ++ +  K+  +  VTG +   +V  +  ++  +++ +    R  +GVRL +      
Sbjct: 741 TINITEKTGKLMCMRAVTGKEDAMIVASDGIMIRVALENVGIYGRNTQGVRLINLNGDAK 800

Query: 698 SDVICFKI 705
              +    
Sbjct: 801 VTRMTLVD 808


>gi|317486104|ref|ZP_07944952.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6]
 gi|316922653|gb|EFV43891.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6]
          Length = 812

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/754 (33%), Positives = 409/754 (54%), Gaps = 27/754 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + V++   + + YL Y+LS I  RAIPD+RDG KPVHRRI+ A  E+   +    KK AR
Sbjct: 3   QNVNIEHEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELANSYNRPPKKCAR 62

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+VIGK HPHGD +VY++LVRLAQ F  R PL  GQGNFG+IDGD+AAA RYTE RM+
Sbjct: 63  IVGDVIGKYHPHGDSAVYNALVRLAQDFSMRDPLEDGQGNFGSIDGDAAAAMRYTEVRMS 122

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A   L  +D++ VDFR  Y+   +EPVV P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 123 RLASEFLNDIDKETVDFRPNYDNTLAEPVVLPTKVPNLLLNGSSGIAVGMATNIPPHNLS 182

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A L LID PE S+E L++ + GPDFPTGG +    + + ++Y  GRG  +VR +  
Sbjct: 183 ELSDALLMLIDAPESSVEDLMDVVQGPDFPTGGYVYAG-QGLYDAYTTGRGTVKVRGKVE 241

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +E+  +G   +++ EIP+ + KS L+EKIA LI  ++I  + D+RDES      V+    
Sbjct: 242 IEDRKKGFQSLIIREIPFGLNKSSLVEKIAALINDRKIDGVSDLRDESDRRGIRVVIELK 301

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ S++  + +ET F +NM  +   R P ++ L   L  +L HRREV+ RR+ 
Sbjct: 302 RGTMPEIVINSLYKYTPLETSFGINMLAVVDNR-PVLLNLKTALAYFLDHRREVVVRRTK 360

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNL 434
           F ++  + R  IL+GLL A  +IDE++++IR+     + K  ++ RF L+E Q  AIL++
Sbjct: 361 FELRKAEARAHILEGLLKALDHIDEVVSLIRSSATPPEAKERLMQRFELSEVQAQAILDM 420

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE  +I+ EL +LL++     S+L      W  I  E+  +K+ +S       
Sbjct: 421 RLQRLTGLERGKIEEELRDLLSKIAWYQSILGDASVLWGVIRDEVEYIKQTYSTP----- 475

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT       A      + ++  + + + +S RG+I+          +     ++ +H  
Sbjct: 476 RRTEVI--REALSNIDIEDLLPDDDVVITLSRRGYIKRTSLGIYQQQRRGGKGVAGVHTG 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D ++  +       +L+ +  G+ + L    +  G    +   I  L+ +  ++ + T
Sbjct: 534 EDDFVQEFITTTNHQFLLMFTNKGRMHQLKVHQVPEGSRTAKGVHIANLVPMEKDEWVNT 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                 +      L  + +G       +    + + G   + +  ++++ +V ++T D  
Sbjct: 594 ILTVREFAEDKSFLFATRRGMVKRSSAALYARSRKGGLIAVGLREDDELIMVREITDDDF 653

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +   +   + FS   +  M RG  GV+  + + G           +    +  +   +
Sbjct: 654 VVLATADGIAIRFSCRDVRNMGRGATGVKGIALRHGDTVVACLVLKEDSPAIMTISALGF 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  N  L  +  RGG G +  K  P++G  + +
Sbjct: 714 GKRTNVDLYRVQSRGGKGIINFKVTPKTGPVIGA 747



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 69/213 (32%), Gaps = 13/213 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E        L      ++   +  + RG ++   +          L A+  +E D L 
Sbjct: 584 PMEKDEWVNTILTVREFAEDKSFLFATRRGMVKRSSAALYARSRKGGLIAVGLREDDELI 643

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           +       D ++L + DG A      ++ +       +   I L H   +V   V     
Sbjct: 644 MVREITDDDFVVLATADGIAIRFSCRDVRNMGRGATGV-KGIALRHGDTVVACLVLKEDS 702

Query: 613 K-LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGDH-VAVVGEN 667
             ++ +S+ G             +R GK  +          +     V  D  + ++   
Sbjct: 703 PAIMTISALGFGKRTNVDLYRVQSRGGKGIINFKVTPKTGPVIGAKSVLDDEALVLLTST 762

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
            K++   +D+I  + R   GVRL    DG    
Sbjct: 763 NKIIRMGVDEIRSVGRATIGVRLVKLDDGARVV 795


>gi|296110749|ref|YP_003621130.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154]
 gi|295832280|gb|ADG40161.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154]
          Length = 849

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 385/760 (50%), Gaps = 19/760 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  N   +  +   +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MSEQN---DSRIHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R+ L+ G GNFG++DGDS
Sbjct: 58  NTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++VA  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+  A   L++NPE +   L+E + GPDFPTGG IV  +  I  +Y  
Sbjct: 178 GMATNIPTHNLGEVISALHVLMNNPEATTLDLMEALPGPDFPTGG-IVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +E+   G   I+VTE+PY V K+RLIE+I+EL   KRI  +  IRDES
Sbjct: 237 GRGRVTVRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V     R     +++ +++  + ++T F  NM  ++ G  PQ M L  IL  +L
Sbjct: 297 DRDGLRVSIDVRRDASASVILNNLYKETLLQTNFSFNMLAIN-GGKPQTMSLKEILVAYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--- 422
           +H+REV+ RR++F +Q    R  IL+GL IA  +ID II IIR+    +           
Sbjct: 356 SHQREVIRRRTAFDLQKAQARAHILEGLRIALDHIDAIIGIIRSSATSEEAKTRLIDGYS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +I+ E   L+A    +  +L   ++    I  E+ E+
Sbjct: 416 LSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALIADLKDILAHEERVDQIIYDELLEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F  +     +      +   D    +  ++       +    +   ++       + 
Sbjct: 476 QTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYIKRVPQAEFKAQNRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            ++  + D +   +   T D +L  +  GK Y +    +       +   +  L+    +
Sbjct: 536 GMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVNLLKFEGD 595

Query: 600 QDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           + I T         +S   L  V+  G       +E       G   L +  ++++  V 
Sbjct: 596 EKIQTVINVRGEAGESKDYLFFVTRLGVVKRTAVNEFSNIRTNGLRALTLRDDDEVLSVQ 655

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   + +  ++   + F+ D +  M R   GVR    +  G   V    +      +
Sbjct: 656 ITDGTQSILIATKDGYSVRFTEDDVRIMGRSAAGVRGIRLR-DGDVVVGSDVVNPNDNVL 714

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        +  RGG G        ++G    
Sbjct: 715 VITEKGYGKQTPVSEYPIKGRGGKGIKTVNITEKNGALAG 754



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 6/198 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL  ++ D +        T  IL+ + DG +      ++        A    
Sbjct: 634 NIRTNGLRALTLRDDDEVLSVQITDGTQSILIATKDGYSVRFTEDDVRIMGRSA-AGVRG 692

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           I L     +V + V +    +LV++ KG       SE     R GK    V+       +
Sbjct: 693 IRLRDGDVVVGSDVVNPNDNVLVITEKGYGKQTPVSEYPIKGRGGKGIKTVNITEKNGAL 752

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             +  + GD  + V      ++ F+   + +  R   GVRL   +DG     +     E 
Sbjct: 753 AGMTIIHGDEDIMVTTTQGVMIRFTASSVSQTGRATLGVRLIRLEDGAKVATLAKVDHEE 812

Query: 709 LTWIDSAGRSYNRSENDL 726
           +       ++ +R     
Sbjct: 813 VVVSAETSQNVSRETPLD 830


>gi|296535957|ref|ZP_06898105.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Roseomonas cervicalis
           ATCC 49957]
 gi|296263705|gb|EFH10182.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Roseomonas cervicalis
           ATCC 49957]
          Length = 745

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/747 (53%), Positives = 539/747 (72%), Gaps = 6/747 (0%)

Query: 6   ISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +  T + E   V+   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR++ AM +
Sbjct: 1   MPDDLTTLPEGGEVRPTHLADALSERYLAYAMSTITARSLPDVRDGLKPVHRRLLWAMHQ 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + LD  A FKK ARIVG+V+GK HPHGD ++YD++VRLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLDPAAGFKKCARIVGDVMGKYHPHGDAAIYDAMVRLAQEFAARYPLVEGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEAR+T++A+ +L+G++E+AVDFR TY+ E+ EP+V P+ FPNLLANG +GI
Sbjct: 121 DNAAAMRYTEARLTEIAKAMLEGIEENAVDFRATYDGEEQEPIVLPAAFPNLLANGAAGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP HN  E+C AAL LIDNP+  +++LL  + GPDFPTGG++VES E+I E+Y
Sbjct: 181 AVGMATSIPPHNAGELCAAALVLIDNPKAELDELLAVMPGPDFPTGGVLVESPEAIREAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRGGFR+RARW  E++  G+W I+VTEIPYQV KSRLIE+IA+L+  K++PLL D+RD
Sbjct: 241 ATGRGGFRIRARWAEEKLKNGAWQIIVTEIPYQVAKSRLIEQIAQLMEEKKLPLLADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES + VRIVL PK+R+++P +LME++F  + +E RFPLNMNVL   R P+VM L  +L+ 
Sbjct: 301 ESTDVVRIVLEPKSRTVEPAVLMETLFRATSLEARFPLNMNVLDASRTPRVMGLREVLRC 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL HR  VL RRS  R+ AI RR+EIL+G LI YLN+DE+I IIR ED PKP +++RF+L
Sbjct: 361 WLDHRHVVLVRRSEHRLAAIARRLEILEGYLIVYLNLDEVIRIIREEDHPKPALMARFAL 420

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TE Q +AILN+RLRSLRKLEE +I+ E   L AE++ + +LL S  ++W +IA EI   +
Sbjct: 421 TETQAEAILNMRLRSLRKLEEMEIRKEHKKLSAEQKSLQALLGSEGKRWKRIAEEIAATR 480

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
             F + T+LGRRR+T  + + A     ++A +E+E ITV++S +GWIR++K H    +  
Sbjct: 481 ARFGEETELGRRRSTL-DAAPAAVVIDERAFVEREMITVILSEKGWIRAVKGHLPPETEH 539

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FKEGD L+ ALHA TTDRI L +T+GK +TL A  +  GRG G+ ++L++DL +  ++V
Sbjct: 540 KFKEGDRLRAALHAETTDRICLFATNGKCFTLKADAIPRGRGDGQPVRLMVDLTNEDEVV 599

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           + FV+    K LV +S G  F+V+  ++ A  R GK  L V S  +   ++   GD VA+
Sbjct: 600 SLFVWRPERKFLVAASDGRGFVVKSEDLTAEKRTGKQVLLVDSPVEAARLIPAEGDTVAI 659

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           +GENRKLL+F ++Q+PEM RG+GV LQ YKDGG++DV  F   EGLTW     R   R E
Sbjct: 660 IGENRKLLVFPLEQVPEMVRGRGVTLQGYKDGGMADVKVFSAREGLTWK-IGER--VRME 716

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DL  W G R G G   P GFP++ +F
Sbjct: 717 TDLTTWRGNRAGAGRQPPNGFPKTNRF 743


>gi|84499895|ref|ZP_00998161.1| DNA topoisomerase IV subunit A [Oceanicola batsensis HTCC2597]
 gi|84391829|gb|EAQ04097.1| DNA topoisomerase IV subunit A [Oceanicola batsensis HTCC2597]
          Length = 769

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/771 (51%), Positives = 532/771 (69%), Gaps = 29/771 (3%)

Query: 6   ISN--SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+   +  +  +  A  L  A+ +RYL YALSTI  RA+PD RDG KPVHRRI++AM E
Sbjct: 1   MSDLIDDPNMGGDTSAEPLSRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L  G  F+KS++I G+V+G  HPHGDQ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSAGGRFRKSSKISGDVMGNFHPHGDQAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEAR+T +AE +++G+ E+AVDFRD Y+   +EPVV P+  PNLLANG SGI
Sbjct: 121 DNPAASRYTEARLTAIAEAMMEGLAENAVDFRDNYDGTLTEPVVLPAAIPNLLANGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN++E+C AAL LI  P+   E LL Y+ GPDFPTGG +VE R ++ E+Y
Sbjct: 181 AVGMATNIPPHNIEELCNAALHLIKTPDARDETLLNYVPGPDFPTGGTMVEPRVNVAEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+RA+W  E++GRG W IVVTEIPYQVQKSRLIEKIAELI  KR+P+L DIRD
Sbjct: 241 RTGRGSFRLRAKWEKEDLGRGQWQIVVTEIPYQVQKSRLIEKIAELIQTKRVPILADIRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+D+R++L P+++++DPD+LM  +F  SD+E RF LNMNVL  G  P+V  L  +L+ 
Sbjct: 301 ESADDIRMILEPRSKAVDPDVLMNMLFRNSDLEVRFSLNMNVLIDGVTPKVCSLKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           +L HRREVL RRS  RM+ ID R+E+L+G +IA+LN+D +I IIR +D PK  +++    
Sbjct: 361 FLDHRREVLLRRSRHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMAEDWS 420

Query: 423 -----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  L+E Q +AILN+RLRSLR+LEE ++  E D L+ E+ 
Sbjct: 421 VKRGRAASEADYVSPIGLDAAGELSEVQAEAILNMRLRSLRRLEELELIRERDALMEERA 480

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            ++ LL S   QW +I+ +IREV++ F   ++ G RRT   E +   +    +AMIE+EP
Sbjct: 481 GLEDLLESEDLQWVRISDQIREVRKTFGAKSEGGARRTLIEE-AGEVEEVPLEAMIEREP 539

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           ITVV S  GW+R++K H      L FK+GD  + A HA TTDR+L+  T+G+ YT+ A N
Sbjct: 540 ITVVCSRMGWVRAMKGHIDLTQKLKFKDGDEGRFAFHAETTDRLLVFGTNGRFYTVSASN 599

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L  GRG GE ++L+ID  +  DIV   ++    KL+V SS G+ F+V E +++A TR GK
Sbjct: 600 LPGGRGMGEPLRLMIDFPNEADIVDILIHKPGRKLVVASSAGDGFLVSEDDVLAQTRSGK 659

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
             L V  +    +   V GD VAVVGENRK+L+F ++ +PEM+RGKGVRLQ YKDGG+SD
Sbjct: 660 QVLNVRGDATALVCKPVQGDTVAVVGENRKVLVFPVEDLPEMARGKGVRLQKYKDGGLSD 719

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           V  F + EGL+W D AGR   R +++L  W G+R G G + P+GFPR  KF
Sbjct: 720 VTTFNLAEGLSWFDPAGR--RRVQSELAEWTGRRAGSGRMAPRGFPRDNKF 768


>gi|260662543|ref|ZP_05863438.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553234|gb|EEX26177.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 836

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/757 (30%), Positives = 386/757 (50%), Gaps = 16/757 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               +   +  V+L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+  
Sbjct: 2   PEQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA
Sbjct: 62  DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+M+++A  +++ +++D VDF+D Y+  + EP V P++FPNLL NG SGIAVGMA
Sbjct: 122 MRYTEAKMSKIAVEMVRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP+HN+ E+  A   L++NP++++ +L++ + GPDFPTGG +V  +  I ++Y  G+G
Sbjct: 182 TNIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGG-VVMGKAGIRQAYESGQG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +EE   G   IVV EIPY V K++LIE+IA L   K I  + D+ DE+  +
Sbjct: 241 SIIVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDRE 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R    ++++ +++ ++ M+T +  NM  +     P+++ L  IL+ +L H+
Sbjct: 301 GMRIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVK-GAPKILSLKEILQYYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTE 425
            EV+ RR+ F ++    R  I+ GL IA  +ID II IIR+ +     K  ++  +SL++
Sbjct: 360 EEVVRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSD 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+LRL  L  LE  +I+ E   L+A       +L   ++    I  E+ E++  
Sbjct: 420 RQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADYKDILAHQERINQIIYDELMEIQNK 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALH 544
           F        +      +   D    +  ++       V        ++       +  + 
Sbjct: 480 FGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNGYVKRLPVDEFKAQNRGGRGVKGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDI 602
               D ++  + + T D +L  +  GK + +    +        G  I  L+D++  + +
Sbjct: 540 VHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIPEYGRAAQGIPIINLLDVDGKEKV 599

Query: 603 VTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                      D    L  V+ +G       +E       G   + +   +++  V  V 
Sbjct: 600 TAVINVAQREDDLQKDLFFVTRQGTVKRTPVTEFKNIRSNGIKAINLHEGDELINVAIVD 659

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D   ++G +      F +  +  M R   GVR    +DG    +    + E    +  +
Sbjct: 660 DDQNMILGTHLGHAATFKVSAVRSMGRSAAGVRGARLRDGDYL-IGAAPLNEDDQVLVIS 718

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG+G        ++G    
Sbjct: 719 EKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPLAG 755



 Score = 74.8 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 61/183 (33%), Gaps = 6/183 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  + A++  EGD L           ++L +  G A T     + S      A    
Sbjct: 635 NIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSMGRSA-AGVRG 693

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
             L     ++ A   +   ++LV+S KG       SE     R G     V+       +
Sbjct: 694 ARLRDGDYLIGAAPLNEDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPL 753

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             +  V GD  + VV +   ++ F ++ + +  R   GV L       +   +     E 
Sbjct: 754 AGLTTVQGDEDLMVVTDKGVIIRFGVESVSQTGRSAIGVHLIKMDADSVVATMTKVEKET 813

Query: 709 LTW 711
              
Sbjct: 814 AET 816


>gi|73916184|gb|AAZ92960.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y ++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|227514124|ref|ZP_03944173.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|227087495|gb|EEI22807.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
          Length = 831

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/753 (30%), Positives = 386/753 (51%), Gaps = 16/753 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   +  V+L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +
Sbjct: 1   MPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYT
Sbjct: 61  KKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M+++A  +L+ +++D VDF+D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP
Sbjct: 121 EAKMSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  A   L++NP++++ +L++ + GPDFPTGG +V  +  I ++Y  G+G   V
Sbjct: 181 THNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGG-VVMGKAGIRQAYESGQGSIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE   G   IVV EIPY V K++LIE+IA L   K I  + D+ DE+  +   +
Sbjct: 240 RAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R    ++++ +++ ++ M+T +  NM  +     P+++ L  IL+ +L H+ EV+
Sbjct: 300 VIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVK-GAPKILSLKEILQYYLEHQEEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ F ++    R  I+ GL IA  +ID II IIR+ +     K  ++  +SL++ Q  
Sbjct: 359 RRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSDRQAQ 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+LRL  L  LE  +I+ E   L+A       +L   ++    I  E+ E++  F   
Sbjct: 419 AILDLRLVRLTGLEREKIEDEYQKLVAAIADYKDILAHQERINQIIYDELMEIQNKFGDE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                +      +   D    +  ++       V        ++       +  +     
Sbjct: 479 RRTELQVGDISNIEDEDLIEEEDIIVTLTHNGYVKRLPVDEFKAQNRGGRGVKGMGVHSD 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAF 606
           D ++  + + T D +L  +  GK + +    +        G  I  L+D++  + +    
Sbjct: 539 DFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIPEYGRAAQGIPIINLLDVDGKEKVTAVI 598

Query: 607 VY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
                  D    L  V+ +G       +E       G   + +   +++  V  V  D  
Sbjct: 599 NVAQREDDLQKDLFFVTRQGTVKRTLVTEFKNIRSNGIKAINLHEGDELINVAIVDDDQN 658

Query: 662 AVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            ++G +      F +  +  M R   GVR    +DG    +    + E    +  + + Y
Sbjct: 659 MILGTHLGHAATFKVSAVRSMGRSAAGVRGARLRDGDYL-IGAAPLNEDDQVLVISEKGY 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +        +  RGG+G        ++G    
Sbjct: 718 GKKTPASEYPIKGRGGLGIKTVNVTEKNGPLAG 750



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 62/194 (31%), Gaps = 6/194 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  + A++  EGD L           ++L +  G A T     + S
Sbjct: 619 TVKRTLVTEFKNIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRS 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 A      L     ++ A   +   ++LV+S KG       SE     R G    
Sbjct: 679 MGRSA-AGVRGARLRDGDYLIGAAPLNEDDQVLVISEKGYGKKTPASEYPIKGRGGLGIK 737

Query: 643 KVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
            V+       +  +  V GD  + VV +   ++ F ++ + +  R   GV L       +
Sbjct: 738 TVNVTEKNGPLAGLTTVQGDEDLMVVTDKGVIIRFGVESVSQTRRSAIGVHLIKMDADSV 797

Query: 698 SDVICFKICEGLTW 711
              +     E    
Sbjct: 798 VATMTKVEKETAET 811


>gi|332654826|ref|ZP_08420568.1| DNA gyrase, A subunit [Ruminococcaceae bacterium D16]
 gi|332516169|gb|EGJ45777.1| DNA gyrase, A subunit [Ruminococcaceae bacterium D16]
          Length = 852

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/764 (31%), Positives = 394/764 (51%), Gaps = 28/764 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
                  ++ +K   L   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E GL
Sbjct: 9   PEEIRFPDQVIKTAPLVKEMEDSYIEYAMSVIVGRALPDVRDGLKPVHRRILYAMYEDGL 68

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                FKKSA  VG+V+G+ HPHGDQSVYD+LVRL Q F  RY L+ G GNFG+IDGD  
Sbjct: 69  TSDKPFKKSATCVGDVLGRYHPHGDQSVYDALVRLGQDFSMRYVLVDGHGNFGSIDGDPP 128

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AAYRYTEARM++++  +L+ ++++ VD+   ++E   EP V PS+FPNLL NG+SGIAVG
Sbjct: 129 AAYRYTEARMSKLSNEMLRDIEKETVDWDPNFDESRKEPRVLPSRFPNLLVNGSSGIAVG 188

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+  A + ++DN   +++ L+E+I GPDFPT G+I   R  I  +Y  G
Sbjct: 189 MATNIPPHNLTEVINAVICVLDNENATLDDLMEHIQGPDFPTKGMI-MGRSGIRAAYATG 247

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +G  RVRAR   EE G+    I+VTEIPYQV K  LI+ +A+ +  KR+  + DIRDES 
Sbjct: 248 KGHIRVRARTEFEEFGKDRTRIIVTEIPYQVNKRMLIKNMADQVEDKRLEGISDIRDESD 307

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWL 365
            +   ++    R  +P +++  +   + ++  F +NM  L    + P+++ L  IL E++
Sbjct: 308 RNGMRIVIELKRDANPQVVLNRLIAQTQLQVTFAINMLALVHDQKQPKILTLREILDEYI 367

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-KPVMVSRFSLT 424
           A + +++ RR+ +  +    R  +L+GLLIA  NIDE+I IIR      K  +++RF L 
Sbjct: 368 AFQEQIITRRTIYDRRKAQERAHLLEGLLIAQDNIDEVIKIIRTSYDNAKERLMTRFGLD 427

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL++L+ L+  ++++E   L       D LL+        +  E+ E+++
Sbjct: 428 DVQAQAILDMRLKALQGLDREKLEAEYKELEERIAYYDKLLSDEGLLRQVLKDELTEIRD 487

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------ 538
            +              E++  +     + +IE+E     ++  G+I+             
Sbjct: 488 KYGDQRKT--------EIAFVEDDLDIEDLIEEEQCVFTLTQAGYIKRTPVSEYAAQSKG 539

Query: 539 --DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLI 594
                 +  ++ D +     A T D +   +  GK Y      +       +      ++
Sbjct: 540 GQGRKGITTRDEDCVVDVFTASTHDYLFFFTDTGKVYRKKGYQIPESGKTAKGTNIVNIL 599

Query: 595 DLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            +   + + T        +    L++V+  G    +  + +      G   L++   +++
Sbjct: 600 QVEQGEKVQTMIHTRELDNPDLYLVMVTRNGTVKRLPVTALKNIRNSGIRALRLEEGDQL 659

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V +  G   + +   +   + F  + +  M R   GVR    ++G    V   +   G
Sbjct: 660 ISVRETDGTKKILIATHDGMAVCFDENDVRPMGRDAVGVRGIRLREGDYV-VSAARATAG 718

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            T +    + Y +        +  RGG+G        ++GK + 
Sbjct: 719 RTVLTITEKGYGKRTPVEDYRITNRGGIGIKNYAVTEKTGKIVG 762



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 7/188 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  + AL  +EGD L        T +IL+ + DG A      ++         ++  
Sbjct: 642 NIRNSGIRALRLEEGDQLISVRETDGTKKILIATHDGMAVCFDENDVRPMGRDAVGVRG- 700

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKM 650
           I L     +V+A    +   +L ++ KG        +     R G             K+
Sbjct: 701 IRLREGDYVVSAARATAGRTVLTITEKGYGKRTPVEDYRITNRGGIGIKNYAVTEKTGKI 760

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
             +  V G + + +V +   L+   +D I E  R  +GV +  +K+ G   VI   + E 
Sbjct: 761 VGIKVVDGSEDLLLVTQAGILIRTHVDAIREAGRATQGVIVMRFKEEG-DKVISLALAER 819

Query: 709 LTWIDSAG 716
               + A 
Sbjct: 820 EETAEVAQ 827


>gi|83941524|ref|ZP_00953986.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. EE-36]
 gi|83847344|gb|EAP85219.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. EE-36]
          Length = 775

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/775 (50%), Positives = 532/775 (68%), Gaps = 33/775 (4%)

Query: 6   ISNSNTL--VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+  T    +    +  LR AL +RYL YALSTI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 3   MSDVTTPADPDSRNSSEPLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L+    F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 63  LRLNSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT VAE +L+G++E+AVDFR+ Y+   +EP V P++FPNLLANG+SGI
Sbjct: 123 DNPAASRYTEARMTAVAEAMLEGLNENAVDFRENYDGTLTEPAVLPAQFPNLLANGSSGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A + LI  P+   + LL+Y+ GPDFPTGGIIVE  E+I  +Y
Sbjct: 183 AVGMATNIPPHNISELVDACIHLIKTPDARDDTLLKYVPGPDFPTGGIIVEPPENIANAY 242

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R G+GGFR+R RW  E++GRG+W IV+TEIPYQVQKS+LIEKIAELI  K+IP+L D+RD
Sbjct: 243 RTGKGGFRLRCRWETEDLGRGAWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILGDVRD 302

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+D+R+++ P+++++DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+ 
Sbjct: 303 ESADDIRLIIEPRSKNVDPEVLMGMLYRSSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRA 362

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------- 413
           +L HRREVL RRS++RM+ ID R+E+L+G ++A+LN+D +I IIR ++ P          
Sbjct: 363 FLDHRREVLQRRSTYRMEKIDHRLEVLEGFIVAFLNLDRVIDIIRYDEDPKSALMAEDWG 422

Query: 414 -------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                         P   +  SL+E Q DAILN+RLRSLR+LEE ++  E   L+ E+  
Sbjct: 423 KDHVRAMDEASYVPPAPSAENSLSEVQADAILNMRLRSLRRLEEIELLREQAALMEERSG 482

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKS-----TDLGRRRTTFCEVSRADKATLQQAMI 515
           ++ LL +   QW+ I  ++RE K+ F K       ++GRRRT+F E +   +    +AMI
Sbjct: 483 LEDLLENEGTQWDTIIDQLRETKKQFGKDWSLDGKNIGRRRTSFSE-AGVIEEVPLEAMI 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++EPITVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+  ++G+ YT+
Sbjct: 542 DREPITVVCSQMGWIRAMTGHIDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTV 601

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            A  L  GRG GE ++L++DL +   IV   ++ +  KLLV SS G+ FIV E +++A T
Sbjct: 602 SASTLPGGRGMGEPLRLMVDLPNEVQIVDILIHKAGRKLLVASSAGDGFIVPEDDVLAQT 661

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695
           R GK  L V  + K  +   VTGD VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDG
Sbjct: 662 RGGKQVLNVRGDAKAMICAPVTGDAVAVVGENRKVLVFGLDELPEMGRGKGVRLQKYKDG 721

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           G+SD I F    GL+W D AGR   R+E DL  W GKR   G + P+GFPR  +F
Sbjct: 722 GMSDAITFSRENGLSWQDPAGR--TRTEADLTEWTGKRATAGRMAPRGFPRDNRF 774


>gi|300781944|ref|YP_003762235.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
 gi|299791458|gb|ADJ41833.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
          Length = 845

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/775 (30%), Positives = 389/775 (50%), Gaps = 38/775 (4%)

Query: 6   ISNS--NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++ +       + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR++++M +
Sbjct: 1   MTETLPPAPDHDRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVHRRVLYSMFD 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      + K +R+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   
Sbjct: 61  SGFRPDRGYNKCSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPGN 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE+R+  +A  +L  ++ED VDF D Y+    EP V PS+FPNLL NG SGI
Sbjct: 121 DPAAAMRYTESRLAPLAMQMLADIEEDTVDFSDNYDGRTQEPDVLPSRFPNLLVNGGSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+ E  +  ++NPE + ++LL      I GPDFPT  +I+     I
Sbjct: 181 AVGMATNIPPHNLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMIL-GTSGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG  R+RA   VEE  +G   +VV+E+PYQV    L+E IA L+   ++  + 
Sbjct: 240 EDAYRTGRGSVRMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIANLVRDGKLTGIS 299

Query: 300 DIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           DI DES       ++    R     +++ ++F  + ++  F +NM  L    VP+ + LD
Sbjct: 300 DIADESNSRSGMRIVVTIKRDAVAKVVLNNLFKHTQLQQNFGVNMLALVD-GVPRTLRLD 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            I++ ++ H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR          
Sbjct: 359 QIIRHYVKHQMDVIVRRTRYRLRKKEERAHILRGLVKALDALDEVIALIRRSPSADEARP 418

Query: 419 SRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           +      + E Q  AIL+++LR L  LE  +I  EL  +  E   +  +L   ++Q   I
Sbjct: 419 ALMTLLDIDEIQAVAILDMQLRRLAALERQRIIDELAEIEIEIADLKDILEKPERQRAII 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+  + + +        RRT     S        + +I  E + V I+  G+ +    
Sbjct: 479 RDELMAIVDKYGD-----DRRTKIIGFSGD---VTDEELIAVEDVVVTITRTGYAKRTKT 530

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRG 585
                 K     +     K+ D ++      T D IL  +  G+ Y   A  L   +   
Sbjct: 531 DLYRSQKRGGKGVQGATLKQDDIVQHFFVCSTHDWILFFTNKGRVYRTKAYELPEANRNA 590

Query: 586 HGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ +  L+    ++ I        Y+    L++ + +G     + ++  +N   G   +
Sbjct: 591 RGQHVANLMAFQPDEQIAQVIQIKNYEVAPYLVLATKRGLVKKTKLTDFDSNRSGGLIAI 650

Query: 643 KVSSEEKMKLVVK-VTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGIS 698
            +   +++   V     D + +V    + + F      +  M R   GV    + DG   
Sbjct: 651 NLREGDELVGAVLAAAEDDLLLVSAEGQSIRFHATDEALRPMGRPTSGVMGMRFNDGDEL 710

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             I   + EG   + +    Y++        +  RGG G L  +   + G+ + +
Sbjct: 711 LGISV-VKEGKFLLVATDGGYSKRTAIEDYPVQGRGGKGVLTIQHDRKRGRLVGA 764



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLL 566
              E  P  V+ + RG ++  K    D +        + +EGD L  A+ A   D +LL+
Sbjct: 614 KNYEVAPYLVLATKRGLVKKTKLTDFDSNRSGGLIAINLREGDELVGAVLAAAEDDLLLV 673

Query: 567 STDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
           S +G++    A +      G   +  + +  N   +++   V      LLV +  G +  
Sbjct: 674 SAEGQSIRFHATDEALRPMGRPTSGVMGMRFNDGDELLGISVVKEGKFLLVATDGGYSKR 733

Query: 626 VEESEIIANTRKGKTFLKV---SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM 681
               +     R GK  L +       ++   + V   D +  +  +  ++      + + 
Sbjct: 734 TAIEDYPVQGRGGKGVLTIQHDRKRGRLVGALIVDAEDELYAITSSGGVIRTPAGDVRKA 793

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            R  KGVRL +  +G     +     E    
Sbjct: 794 GRQTKGVRLMNLGEGTTLLAVARNADEPSDV 824


>gi|9230559|gb|AAF85900.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    + ++L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLANILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|291294835|ref|YP_003506233.1| DNA gyrase A subunit [Meiothermus ruber DSM 1279]
 gi|290469794|gb|ADD27213.1| DNA gyrase, A subunit [Meiothermus ruber DSM 1279]
          Length = 806

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/759 (31%), Positives = 388/759 (51%), Gaps = 33/759 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             V  V +   +++ ++ YA+S I +RA+PD+RDG KPV RRI++   + G+       K
Sbjct: 2   SQVLPVEITDEVKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYGAYQDGVLPSRKHVK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVGEV+GK HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG++DGD  AA RYTEA
Sbjct: 62  CAKIVGEVMGKFHPHGDAAIYDTLVRLAQPWNLRYPLIDGQGNFGSVDGDPPAAQRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +   +LQ +D++ V F   Y+    +P V P+  PNLL NG++GIAVGMATS+P H
Sbjct: 122 RLSNIGLELLQDLDKETVPFVPNYDGTQEQPEVLPAALPNLLVNGSAGIAVGMATSLPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +IDNPE+++E++++ + GPDFPTG  +  SR  I E+Y  GRG  +VRA
Sbjct: 182 NLGEVVDALVLMIDNPEVTLEEVMKVLPGPDFPTGAKL--SRRGIKEAYATGRGSLKVRA 239

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R    E   G   +V TEIPYQV K+ LI +IA L+  K I  +  +RDES      +  
Sbjct: 240 RVR-NEDKNGRAMLVFTEIPYQVNKADLIAQIASLVRNKVIDEIAALRDESDRQGMRIAV 298

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  +P +++  ++  S ++T F +N+  +     P+V+ L  +++ +L HR  V+ +
Sbjct: 299 ELKRGANPQVVLNKLYKHSRLQTSFTVNLLAIVK-GEPKVLTLLELMRHYLDHRGLVVRK 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAI 431
           R+ + ++    R  +L+GLLIA  +IDE+IA+IR                 LTE Q  AI
Sbjct: 358 RTEYELRKARERAHVLEGLLIALDHIDEVIALIRGSQDAAEARAGLMGRFSLTEVQAQAI 417

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++++E   L+ E  +++++L   K+ W  +  E+  +K+ +     
Sbjct: 418 LDMRLQRLVGLERDKLQAEYRELMEEIGRLEAILGDEKRLWRVVRDELLAIKDKYGD--- 474

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
             +RRT   E          + +IE EP+ + ++++G+++     +            A 
Sbjct: 475 --QRRTQITEFEEGFSL---EDLIEDEPMVITLTSQGFVKRTPLEAYRAQGRGGMGAQAG 529

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQD 601
             KE D       A   D +L+ +  G+ Y      L     +  G  I  L+ L   ++
Sbjct: 530 KTKEEDEAISVFVASMHDTLLIFTNRGRVYGEKVHELPEASRQARGTHIVSLLPLQEGEE 589

Query: 602 IVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-T 657
           +               +  +  G     E  E    +  G   + +   + +  V     
Sbjct: 590 VAALLNVRDLTQEGYFVFATKNGLIKKTEIKEYQNLSSAGLIAINLLENDALVGVAIAQE 649

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKI---CEGLTWID 713
           GD V +  ++ + + F +  +    R  +GV    +K+G    V+   I    E    + 
Sbjct: 650 GDQVMLATQSGQAIRFELSDVRATGRASQGVTGIRFKEGRDDRVVSLVILPKGEESEVLA 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        L  RGG+G +      + G+  +
Sbjct: 710 VGSHGYGKRTPISEYPLQGRGGMGVITFNTNEKVGQLAA 748



 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 8/191 (4%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                      S  L A++  E D+L     A   D+++L +  G+A      ++ +   
Sbjct: 616 KTEIKEYQNLSSAGLIAINLLENDALVGVAIAQEGDQVMLATQSGQAIRFELSDVRATGR 675

Query: 586 HGEAIQLLIDLNHNQD-IVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             + +  +       D +V+  +       ++L V S G       SE     R G   +
Sbjct: 676 ASQGVTGIRFKEGRDDRVVSLVILPKGEESEVLAVGSHGYGKRTPISEYPLQGRGGMGVI 735

Query: 643 KVSSEEKM----KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
             ++ EK+     L+     + + V+      +   +  I +  R   GVR+ +  D   
Sbjct: 736 TFNTNEKVGQLAALMRVQGNEDLLVLSRRGNAIRTKVSSIAQYGRATSGVRVMNLSDKDE 795

Query: 698 SDVICFKICEG 708
                    + 
Sbjct: 796 IASAFVIAPQD 806


>gi|26988498|ref|NP_743923.1| DNA gyrase subunit A [Pseudomonas putida KT2440]
 gi|24983263|gb|AAN67387.1|AE016365_2 DNA gyrase, subunit A [Pseudomonas putida KT2440]
          Length = 923

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/838 (30%), Positives = 413/838 (49%), Gaps = 108/838 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE++I++L+++I GPDFPT G I+  R+ I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPEVTIDELMQHIPGPDFPTAG-IINGRQGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVD-GRPRLLNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL+LRL  L  LE  ++ +E   
Sbjct: 422 QVMVERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +L+S ++    I  E+  ++  +        RRT       A        
Sbjct: 482 ILEQIGELIRILSSAERLMEVIREELEAIRAEYGD-----VRRTEIL---NASHDLNYGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           MI +E   V IS+ G+         ++ +      SA   K+ D ++  L A++   +LL
Sbjct: 534 MIPEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD-------------- 609
            S+ GK Y      +        G  +  L+ L   + I      D              
Sbjct: 594 FSSKGKVYWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEEL 653

Query: 610 --------------------------------STCKLLVVSSKGNAFIVEESEIIANTRK 637
                                           +   + + ++ G        +       
Sbjct: 654 DEAEDTVLEGELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSN 713

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   LK+   + +       G   V +  +  K++ F+   + EM R  +GVR      G
Sbjct: 714 GLIALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRNARGVRGMKLGKG 773

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +      G   + ++ R + +           RGG G +      R+G  + +
Sbjct: 774 QRIISMLI-PESGSQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGA 830



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +++ S  GK     A +++   G        + L   Q I++  + +S  ++L  S +G 
Sbjct: 738 VMMFSDAGKVIRF-AESVVREMGRNARGVRGMKLGKGQRIISMLIPESGSQILTASERGF 796

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK--LVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 S+     R   G   +       +    +    G+ + ++ +   L+   + ++
Sbjct: 797 GKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEV 856

Query: 679 PEMSR-GKGVRLQSYKDGG 696
             +SR  +GV L       
Sbjct: 857 SSLSRNTQGVTLIKLAADE 875


>gi|325276957|ref|ZP_08142639.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51]
 gi|324097912|gb|EGB96076.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51]
          Length = 921

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/838 (30%), Positives = 414/838 (49%), Gaps = 108/838 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLSDLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE+++++L+++I GPDFPT G I+  R+ I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPEVTVDELMQFIPGPDFPTAG-IINGRQGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 243 RARSEVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVD-GRPRLLNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL+LRL  L  LE  ++ +E   
Sbjct: 422 QVMVERAGAEACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +LNS ++    I  E+  ++  +  +     RRT       A        
Sbjct: 482 ILEQIGELIRILNSAERLMEVIREELEAIRAEYGDA-----RRTEIL---NASHDLNYGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           MI +E   V IS+ G+         ++ +      SA   K+ D ++  L A++   +LL
Sbjct: 534 MIPEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD-------------- 609
            S+ GK Y      +        G  +  L+ L   + I      D              
Sbjct: 594 FSSKGKVYWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQVDLEALQQNADLDEEL 653

Query: 610 --------------------------------STCKLLVVSSKGNAFIVEESEIIANTRK 637
                                           +   + + ++ G        +       
Sbjct: 654 EDADDTVLEGELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSN 713

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   LK+   + +       G   V +  +  K++ F+   + EM R  +GVR      G
Sbjct: 714 GLIALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRNARGVRGMKLGKG 773

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +      G   + ++ R + +           RGG G +      R+G  + +
Sbjct: 774 QQIISMLI-PESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGA 830



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 58/139 (41%), Gaps = 6/139 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +++ S  GK     A +++   G        + L   Q I++  + +S  ++L  S +G 
Sbjct: 738 VMMFSDAGKVIRF-AESVVREMGRNARGVRGMKLGKGQQIISMLIPESGAQILTASERGF 796

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                 S+     R G+  + + ++ +   +   ++V  G+ + ++ +   L+   + ++
Sbjct: 797 GKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVHEGEEIMLISDQGTLVRTRVGEV 856

Query: 679 PEMSR-GKGVRLQSYKDGG 696
             +SR  +GV L       
Sbjct: 857 SSLSRNTQGVTLIKLAADE 875


>gi|114771233|ref|ZP_01448653.1| DNA topoisomerase IV subunit A [alpha proteobacterium HTCC2255]
 gi|114548158|gb|EAU51045.1| DNA topoisomerase IV subunit A [alpha proteobacterium HTCC2255]
          Length = 748

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/743 (52%), Positives = 538/743 (72%), Gaps = 3/743 (0%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N+      +  +  LR A+ +RYL YALSTI  RA+PD RDG KPVHRRI++AM  + L 
Sbjct: 8   NNEDDGGGSTLSEPLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMYRLKLV 67

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYP++ GQGNFGNIDGD+ A
Sbjct: 68  SNGKFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFSVRYPMVDGQGNFGNIDGDNPA 127

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARMT VAE +L G++E+AVDF+D Y+   +EP V P+ FPNLLANG++GIAVGM
Sbjct: 128 AARYTEARMTAVAEAMLIGMEENAVDFQDNYDGRLTEPSVLPASFPNLLANGSTGIAVGM 187

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ +A++ LI  P    E LL+++ GPDFPTGGI+VE R+S++E+YR GR
Sbjct: 188 ATNIPPHNIGELLDASIHLIKAPNARDETLLDFVPGPDFPTGGILVEPRDSLLETYRTGR 247

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+R++W +E++ RG W IVVTEIPYQVQKS+LIEKIAELI  K++P+L D+RDESAE
Sbjct: 248 GPMRLRSKWEIEDLPRGLWQIVVTEIPYQVQKSKLIEKIAELIQLKKLPILADVRDESAE 307

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D+R+VL P+ +++DP +LME++F +SD+E RF LN+N L  GR P+V  +  +L+ ++ H
Sbjct: 308 DIRLVLEPRAKTVDPTVLMETLFRMSDLEVRFNLNLNTLIDGRTPKVCSMKEVLRAFIDH 367

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           +R+VL RRS  RM  ID R+E+L+G ++A+LN+D +I IIRNED+PK +M+  FSL++ Q
Sbjct: 368 KRDVLLRRSKHRMDKIDHRLEVLEGYIVAFLNLDRVIEIIRNEDEPKKIMMKEFSLSDVQ 427

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           V+AILN+RLRSLRKLEE ++++ELD+L  E+  +D LL S K QW +I  E+RE +++F 
Sbjct: 428 VEAILNMRLRSLRKLEEIELRTELDSLQLERADLDDLLASEKMQWERIINELRETRKVFG 487

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K++D G RRT   E +   +    +AMIEKEPITVV S+ GW+R++K H      L +K+
Sbjct: 488 KNSDSGNRRTELAE-APDFEEVPIEAMIEKEPITVVCSSMGWLRAMKGHVDLSQELKYKD 546

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD  +   HA TTD++L+   +G+ YT+    L  GRG GE I+L++DL ++ ++V  F+
Sbjct: 547 GDEKRFVFHAETTDKLLMFGGNGRFYTMSCSELPGGRGMGEPIRLIVDLPNDANMVDLFI 606

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
           +    KLL+ SS G+ F+VEE++I+A TR GK  L V  +    +   V GD+VA VG+N
Sbjct: 607 HQPDRKLLLASSAGDGFVVEENDIVAQTRTGKQALNVKGDITALICKPVVGDYVATVGQN 666

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           RK+LIF ID++P MSRGKGVR+Q YKDGG++D   F   +GL+W+D AGR   R E +L 
Sbjct: 667 RKVLIFPIDELPVMSRGKGVRMQKYKDGGLNDATTFHFIDGLSWLDPAGR--RRIETELA 724

Query: 728 GWLGKRGGVGSLVPKGFPRSGKF 750
            W+GKR G G + P+GFPR  KF
Sbjct: 725 DWIGKRAGAGRMAPRGFPRENKF 747


>gi|330986666|gb|EGH84769.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 928

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/834 (30%), Positives = 412/834 (49%), Gaps = 104/834 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE++I++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++  E   
Sbjct: 422 VEMVERAGADSCRPENLNPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +LNS  +    I  E+  ++  +  +     RRT   +   A        
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELEVIRSEYGDA-----RRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +L+
Sbjct: 534 LITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLM 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----------- 612
            S+ GK Y L    +        G  +  L+ L+  + I T    D              
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEA 653

Query: 613 -------------------------------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                                           + + ++ G                G   
Sbjct: 654 LEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIA 713

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           L++   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    
Sbjct: 714 LELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLI 773

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLI-PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++L  S +
Sbjct: 732 QEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMR-LPEGQKLISMLIPEEGSQILTASER 790

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L+   + 
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVG 850

Query: 677 QIPEMSR-GKGVRLQSYKDGG 696
           ++  + R  +GV L       
Sbjct: 851 EVSSLGRNTQGVTLIKLASDE 871


>gi|317500892|ref|ZP_07959103.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897690|gb|EFV19750.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 853

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/770 (31%), Positives = 399/770 (51%), Gaps = 37/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MEDN---IFDKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   +++D VDF   ++E + EPVV PS+FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E+  A + +ID+      E S+E +L+ I GPDFPTG  I+     I 
Sbjct: 178 GMATNIPPHNLREVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   I+VTE+P+ V K+RLIEKIAEL+  K++  + D
Sbjct: 237 EAYRTGRGKIRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D+S+ +   +     R ++P++++  ++  + ++  F + M  L     P+VM +  +
Sbjct: 297 LSDQSSREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALV-NNEPKVMNILDM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           LK +L H+ EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR     +      
Sbjct: 356 LKYYLKHQEEVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAEL 415

Query: 420 --RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             RF L+E Q  AI+++RLR+L  LE  ++++E   L+ + E+  ++L   K     I  
Sbjct: 416 ISRFDLSEVQAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAILADRKLLLGVIRK 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           EI  + E +        RRT        +     + +I +E + + ++N G+I+ +    
Sbjct: 476 EILVISEKYGDE-----RRTHI---GYDEFDISMEDLIPRENVVITVTNMGYIKRMSMDT 527

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   E D ++      +   I+  +  G+ Y L A  +        G
Sbjct: 528 FKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAGRTARG 587

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            A+  L+ L  ++ I        Y+    L + + KG        + +   + G   + +
Sbjct: 588 TAVINLLQLMPDEKITATIPIKEYEDGKYLFMATKKGLVKKTPIQDYMNVRKTGLAAISL 647

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++ +  V        + +V +  + + F+   +    R   GVR  +  D      + 
Sbjct: 648 REDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRSTGRVSMGVRGMNLSDNDEIIGMQ 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +G   +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 708 MS-SQGKDMLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITEKTGNVVG 756



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 6/147 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             ILL++  G+       ++ S       ++ + +L+ N +I+   +      +L+VS K
Sbjct: 663 QDILLVTKYGQCIRFNEKDVRSTGRVSMGVRGM-NLSDNDEIIGMQMSSQGKDMLIVSEK 721

Query: 621 GNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G        E     R GK      +   +   + +        + ++     ++     
Sbjct: 722 GMGKRTSMEEFTKQNRGGKGVKCYKITEKTGNVVGMKAVDEESEIMIINTEGIVIRMKCS 781

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVIC 702
            I +  R   GV+L +  +      + 
Sbjct: 782 DISQYGRITSGVKLINLPEKEKVASVA 808



 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 52/136 (38%), Gaps = 9/136 (6%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S+ +  ++  + D +     +     +L++S  G                G+ ++     
Sbjct: 689 SMGVRGMNLSDNDEIIGMQMSSQGKDMLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKIT 748

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVV 654
               ++V     D   ++++++++G    ++ S+I    R   G   + +  +EK+  V 
Sbjct: 749 EKTGNVVGMKAVDEESEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKEKVASVA 808

Query: 655 K-------VTGDHVAV 663
           K       + G+ V +
Sbjct: 809 KVRTASAEIDGEEVEI 824


>gi|331089208|ref|ZP_08338110.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330405760|gb|EGG85289.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 853

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/770 (31%), Positives = 399/770 (51%), Gaps = 37/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MEDN---IFDKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   +++D VDF   ++E + EPVV PS+FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E+  A + +ID+      E S+E +L+ I GPDFPTG  I+     I 
Sbjct: 178 GMATNIPPHNLREVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   I+VTE+P+ V K+RLIEKIAEL+  K++  + D
Sbjct: 237 EAYRTGRGKIRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D+S+ +   +     R ++P++++  ++  + ++  F + M  L     P+VM +  +
Sbjct: 297 LSDQSSREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALV-NNEPKVMNILDM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           LK +L H+ EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR     +      
Sbjct: 356 LKYYLKHQEEVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAEL 415

Query: 420 --RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             RF L+E Q  AI+++RLR+L  LE  ++++E   L+ + E+  ++L   K     I  
Sbjct: 416 ISRFDLSEVQAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAILADRKLLLGVIRK 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           EI  + E +        RRT        +     + +I +E + + ++N G+I+ +    
Sbjct: 476 EILVISEKYGDE-----RRTHI---GYDEFDISMEDLIPRENVVITVTNMGYIKRMSMDT 527

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   E D ++      +   I+  +  G+ Y L A  +        G
Sbjct: 528 FKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAGRTARG 587

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            A+  L+ L  ++ I        Y+    L + + KG        + +   + G   + +
Sbjct: 588 TAVINLLQLMPDEKITATIPIKEYEDGKYLFMATKKGLVKKTPIQDYMNVRKTGLAAISL 647

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++ +  V        + +V +  + + F+   +    R   GVR  +  D      + 
Sbjct: 648 REDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRSTGRVSMGVRGMNLSDNDEIIGMQ 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +G   +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 708 MS-SQGKDMLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITEKTGNVVG 756



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 6/147 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             ILL++  G+       ++ S       ++ + +L+ N +I+   +      +L+VS K
Sbjct: 663 QDILLVTKYGQCIRFNEKDVRSTGRVSMGVRGM-NLSDNDEIIGMQMSSQGKDMLIVSEK 721

Query: 621 GNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G        E     R GK      +   +   + +        + ++     ++     
Sbjct: 722 GMGKRTSMEEFTKQNRGGKGVKCYKITEKTGNVVGMKAVDEESEIMIINTEGIVIRMKCS 781

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVIC 702
            I +  R   GV+L +  +      + 
Sbjct: 782 DISQYGRITSGVKLINLPEKERVASVA 808



 Score = 40.9 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 52/136 (38%), Gaps = 9/136 (6%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S+ +  ++  + D +     +     +L++S  G                G+ ++     
Sbjct: 689 SMGVRGMNLSDNDEIIGMQMSSQGKDMLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKIT 748

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVV 654
               ++V     D   ++++++++G    ++ S+I    R   G   + +  +E++  V 
Sbjct: 749 EKTGNVVGMKAVDEESEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKERVASVA 808

Query: 655 K-------VTGDHVAV 663
           K       + G+ V +
Sbjct: 809 KVRTASAEIDGEEVEI 824


>gi|269118650|ref|YP_003306827.1| DNA gyrase subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268612528|gb|ACZ06896.1| DNA gyrase, A subunit [Sebaldella termitidis ATCC 33386]
          Length = 819

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/749 (33%), Positives = 400/749 (53%), Gaps = 18/749 (2%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           K + +   ++  YL Y++S I  RA+PD+RDG KPVHRRI+ AM+E+G+ +   +KKSAR
Sbjct: 12  KPIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNELGMTYDKPYKKSAR 71

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVGEV+GK HPHGD +VY ++VRLAQ F  RY LI+G GN+G+IDGD AAA RYTEARM 
Sbjct: 72  IVGEVLGKYHPHGDSAVYGAMVRLAQEFNTRYLLINGHGNYGSIDGDGAAAMRYTEARMA 131

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           +++  +L+ +D++ +DFR  ++E   EP V P+K PNLL NG +GIAVGMAT+IP HN  
Sbjct: 132 KISNELLEDIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNAG 191

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C+  +A+I+NP+I+I++L+ YI GPDFPTGG I+  R  I+E+Y+ GRG  RV  +  
Sbjct: 192 EVCDGIVAMIENPDITIDELITYITGPDFPTGG-IINGRSGIIEAYKTGRGKVRVAGKIK 250

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +EE   G   I+V E+PYQV K+RLIE+IAEL+  K++  + D+RDES  D   V+    
Sbjct: 251 IEESKNGKESIIVNELPYQVNKARLIERIAELVRNKKLTGISDLRDESDRDGIRVVIELK 310

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  + +L++ S++  +D++  F +    L     P+V+ L  IL+ +L HR  V+ RR+ 
Sbjct: 311 RGEESELILNSLYKYTDLQNTFGIIFLALVD-NAPRVLNLKEILQNYLKHRYSVVTRRTK 369

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNL 434
           F +   ++R  IL+G  IA  NIDE+I IIR            ++ F+ +E Q  AIL++
Sbjct: 370 FELDKAEKRAHILEGFKIALDNIDEVIKIIRGSQDGNEAKDKLMAGFAFSEVQAKAILDM 429

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE  +I+ E   L+   E++ ++L+   + +  I  E++++KE FS       
Sbjct: 430 RLQRLTGLERGKIEEEYKELMLLIEELKAILSDPDKIYAIIKEEVKKIKEDFSDPRRTEI 489

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           R               +  +   +   V  +     R+ K   + +SA +  E D +K  
Sbjct: 490 RDARVEIGIEDLIKDEEVVVTLTDKGYVKRTPIDVYRAQKRGGIGVSATNILEDDIIKDM 549

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-----IVTAFVYD 609
             A   D +L+ +T GK + +    +           +   +   +D     I+    ++
Sbjct: 550 YIAKNLDSLLIFTTKGKVHDIKVYEIPEASKQARGRLISNIIKLQEDEMVSTIIKVREFE 609

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGE 666
               +  V+ KG           +  + G   + +  ++++      +G   D + +   
Sbjct: 610 KDKDIFFVTRKGVVKKTNLELFASINKAGIKAIGLKDDDELIFAGLTSGTLKDEIFLATR 669

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF----KICEGLTWIDSAGRSYNR 721
               + FS + +  M R   GV+  + +   +          +   G T +  +   Y +
Sbjct: 670 EGFAIRFSENDVRSMGRTASGVKGITLRPEDVIVAGAIIYASEDLSGKTILTISEEGYGK 729

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                   L  RGG G    K   ++GK 
Sbjct: 730 RTKLEEYRLQSRGGKGITNLKKNTKTGKI 758



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 61/205 (29%), Gaps = 9/205 (4%)

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
                     V  +N     S+    +    L   +             D I L + +G 
Sbjct: 613 DIFFVTRKGVVKKTNLELFASINKAGIKAIGLKDDDELIFAGLTSGTLKDEIFLATREGF 672

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVE 627
           A      ++ S       ++ +     +  +  A +Y S       +L +S +G     +
Sbjct: 673 AIRFSENDVRSMGRTASGVKGITLRPEDVIVAGAIIYASEDLSGKTILTISEEGYGKRTK 732

Query: 628 ESEIIANTRKGKTFLKVSSE---EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
             E    +R GK    +       K+  V  V     + ++     L+   ++ I  + R
Sbjct: 733 LEEYRLQSRGGKGITNLKKNTKTGKISDVKIVDDSSEIMLITSEGTLIRTQVNSISIIGR 792

Query: 684 G-KGVRLQSYKDGGISDVICFKICE 707
              GVR+   ++            E
Sbjct: 793 ATSGVRIMKVRENEKVASTVKITPE 817


>gi|254453718|ref|ZP_05067155.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 238]
 gi|198268124|gb|EDY92394.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 238]
          Length = 803

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/773 (49%), Positives = 535/773 (69%), Gaps = 31/773 (4%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++++     + N     LR AL +RYL YALSTI  RA+PD RDG KPVHRRI++AM E+
Sbjct: 34  SMNDDALDPKMNPTET-LRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMREL 92

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD
Sbjct: 93  KLASKGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGD 152

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           + AA RYTEARMT  AE +L+G++E+AVDFR+ Y+    EPVV P+ FPNLLANG+SGIA
Sbjct: 153 NPAAARYTEARMTAAAEALLEGLNENAVDFRENYDGTLEEPVVLPAAFPNLLANGSSGIA 212

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN++E+  A L LI +P    E LL+YI GPDFPTGG+IVE +E+I E+YR
Sbjct: 213 VGMATNIPPHNLEELIGACLHLIKSPNARDETLLDYIPGPDFPTGGVIVEPKENIAEAYR 272

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+GGFR+R ++ VE++GRG W +++TEIPYQVQKSRLIEK+AE+I  K++P+L D+RDE
Sbjct: 273 TGKGGFRLRCKYEVEDLGRGQWQVIITEIPYQVQKSRLIEKLAEIIELKKVPILADVRDE 332

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SAED+RIVL PK++++D ++LM  ++  S++ETRF LNMNVL  G  P+V  L  +L+ +
Sbjct: 333 SAEDIRIVLEPKSKNVDVEVLMGMLYRNSELETRFSLNMNVLIDGLTPKVCSLKEVLRAF 392

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------ 418
           L HRR+VL RRS+ RM  ID R+E+L+G +IA+LN+D +I IIR ++ PK  ++      
Sbjct: 393 LDHRRDVLIRRSTHRMVKIDHRLEVLEGFIIAFLNLDRVIDIIRYDNDPKKALMAEDWGK 452

Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                    LT+ Q +AILN+RLRSLR+LEE ++  E D L+ E
Sbjct: 453 THARAMDEADYVSPLTGLVSEPEMGLTDVQAEAILNMRLRSLRRLEEIELVKERDALMLE 512

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           +  ++ LL+S   QW  IA ++RE +++F  +++ G RRT F  V+   +    +AMI+K
Sbjct: 513 RAGLEDLLDSEDLQWKTIADQLRETRKLFGSNSEGGARRTAFA-VAGVVEDVPLEAMIDK 571

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           EP+TVV S  GWIR+L  H      L FK+GD  +   HA TTDR+L+  ++G+ YT+  
Sbjct: 572 EPVTVVCSKMGWIRALTGHIDLARELKFKDGDEGRFVFHAQTTDRLLVFGSNGRFYTMGT 631

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
             L  GRG GE ++L++DL +  +IV  F++ +  KLLV SS G+ F+V E ++IA TR 
Sbjct: 632 STLPGGRGMGEPLRLMVDLPNEAEIVALFIHRAGNKLLVASSAGDGFVVPEDDVIAQTRA 691

Query: 638 GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI 697
           GK  L V  + + ++   VTGD+VA VGENRK+L+F +D++PEM RGKGVRLQ YKDGG+
Sbjct: 692 GKQVLNVKGDVRARVCSTVTGDYVACVGENRKVLLFPLDELPEMGRGKGVRLQKYKDGGL 751

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           SD   F + +GL+W+D AGR   R++ +L  W  KR G G + P+GFPR  +F
Sbjct: 752 SDATTFTLADGLSWLDPAGR--TRTQTELAEWAAKRAGAGRMAPRGFPRDNRF 802


>gi|154503044|ref|ZP_02040104.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149]
 gi|153796285|gb|EDN78705.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149]
          Length = 837

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/771 (31%), Positives = 407/771 (52%), Gaps = 39/771 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MEDN---IFDKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   ++++ VDF   ++E + EP V P++FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMEMTADINKNTVDFAPNFDETEKEPTVLPARFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++EI  A + +ID+      E SI+ +L+ + GPDFPTG  I+     I 
Sbjct: 178 GMATNIPPHNLREIIGAVVKIIDDQIDENGETSIDDILKIVKGPDFPTGAEIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K++  + D
Sbjct: 237 EAYRTGRGKIRVRAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D+S+ +   +     R ++P++++  ++  + ++  F + M  L     P+VM +  +
Sbjct: 297 LSDQSSREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALV-NNEPKVMNILDM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVM 417
           LK +L H+ EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR     +     +
Sbjct: 356 LKHYLKHQEEVVTRRTQYELNRAEERAHILQGLLIALDNIDEVIRIIRGSKNVQTAKEEL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++RF LTE Q  AI+++RLR+L  LE  ++++E + L+ +  ++ ++L   K     I  
Sbjct: 416 MARFDLTEVQASAIVDMRLRALTGLEREKLEAEYEELMKKIGELKAILADRKLLLGVIKK 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           EI  + E +        RRT+       +     + +I +E + + ++  G+I+ +    
Sbjct: 476 EILVISEKYGDE-----RRTSI---GFDEFDISMEDLIPRENVVITMTKMGYIKRMSMDT 527

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   + D +K      T   I+  +  G+ Y L    +        G
Sbjct: 528 FKSQNRGGKGIKGMQILDDDYIKELFITTTHHYIMFFTNTGRVYRLKGYEIPEASRTARG 587

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            AI  L+ L  ++ I        Y+    LL+ + KG        +     + G   + +
Sbjct: 588 TAIINLLQLMPDEKITAMIPIREYEDGQYLLMATEKGLVKKTPIKDYANVRKTGLAAIVL 647

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++K+  V     +  V +V +    + FS   +    R   GVR  +   G   +VI 
Sbjct: 648 REDDKLIEVKITDDEQDVILVTKYGMCIRFSEKDVRPTGRVSMGVRGMNL--GDHDEVIG 705

Query: 703 FKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +I + G   + ++ +   +  +        RGG G    K   ++G  + 
Sbjct: 706 MQISDQGKYLLIASEKGMGKLTDMDEFTRQNRGGKGVKCYKITEKTGDVVG 756



 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 8/152 (5%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 ++L++  G        ++         ++ + +L  + +++   + D    LL+
Sbjct: 659 TDDEQDVILVTKYGMCIRFSEKDVRPTGRVSMGVRGM-NLGDHDEVIGMQISDQGKYLLI 717

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLL 671
            S KG   + +  E     R GK      +   + + +  +  V  D  + ++     ++
Sbjct: 718 ASEKGMGKLTDMDEFTRQNRGGKGVKCYKITEKTGD-VVGMKAVDEDSEIMMINTEGIVI 776

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
                 I    R   GV+L +  +      I 
Sbjct: 777 RMKCSDISVYGRITSGVKLINLPENEKVASIA 808



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 46/122 (37%), Gaps = 2/122 (1%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S+ +  ++  + D +     +     +L+ S  G                G+ ++     
Sbjct: 689 SMGVRGMNLGDHDEVIGMQISDQGKYLLIASEKGMGKLTDMDEFTRQNRGGKGVKCYKIT 748

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVV 654
               D+V     D   ++++++++G    ++ S+I    R   G   + +   EK+  + 
Sbjct: 749 EKTGDVVGMKAVDEDSEIMMINTEGIVIRMKCSDISVYGRITSGVKLINLPENEKVASIA 808

Query: 655 KV 656
           KV
Sbjct: 809 KV 810


>gi|73916150|gb|AAZ92943.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916152|gb|AAZ92944.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916158|gb|AAZ92947.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916186|gb|AAZ92961.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916194|gb|AAZ92965.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916196|gb|AAZ92966.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916198|gb|AAZ92967.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916204|gb|AAZ92970.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916214|gb|AAZ92975.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916236|gb|AAZ92986.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|323341106|ref|ZP_08081354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           ruminis ATCC 25644]
 gi|323091527|gb|EFZ34151.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           ruminis ATCC 25644]
          Length = 835

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/751 (31%), Positives = 392/751 (52%), Gaps = 30/751 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKSARIVG+
Sbjct: 1   MSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSARIVGD 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEARM+++A 
Sbjct: 61  VMGKYHPHGDSAIYESMVRMAQDFSYRYLLVDGHGNFGSVDGDGAAAMRYTEARMSKIAL 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+ +++D VDF+  Y+E + EPVV PS+FPNLL NG +GIAVGM T+IP HN++E+  
Sbjct: 121 EMLRDINKDTVDFQPNYDETEREPVVLPSRFPNLLVNGATGIAVGMTTNIPPHNLREVIS 180

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
               L++NP+ +  +L+E I GPDFPTG  IV  +  I ++Y  G G   +RA+  +EE 
Sbjct: 181 GLHLLMENPDATTAELMEAIPGPDFPTGA-IVMGKSGIRKAYETGHGTVTLRAKVDIEEQ 239

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   I+V EIPY V K+ LI +IA+L   K+I  + DI DES  +   +     R + 
Sbjct: 240 SNGKSRIIVHEIPYMVNKANLITRIADLAREKKIDGITDINDESDREGMRITIDIRRDVS 299

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P +++ +++ L+ M++ F  NM  +     PQV+ L  IL+ +L H+ +V+ RR++F ++
Sbjct: 300 PSVVLNNLYKLTLMQSSFTFNMLAIVD-GTPQVLGLKQILQYYLKHQEDVIRRRTAFDLK 358

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRS 438
               R  IL+GL IA  +ID II+IIRN       K  +++ + L++ Q  AIL++RL  
Sbjct: 359 KAQARAHILEGLKIALDHIDAIISIIRNSQSGEVAKDRLMNEYELSDKQAQAILDMRLVR 418

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE  ++ +E    L        +L   ++  + I  E+ E++E F        RRT 
Sbjct: 419 LTGLEREKVDAEYKKTLEAIADFKDILAHEERVNSIIYQELLEIQEKFGD-----DRRTE 473

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDS 550
              +     +   + +IE+E + + +++ G+I+          +     +  +   + D 
Sbjct: 474 L--MVGEVLSIEDEDLIEEENVVIALTHNGYIKRLPTSDFKTQRRGGRGVQGMGVHDDDF 531

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY 608
           ++  +   T D +L  +  GK Y +    +       +   +  L+DL+  + I T    
Sbjct: 532 IEHLITTSTHDEVLFFTNIGKVYRMKGYEVPEYGRAAKGIPVINLLDLSEGEKIQTVINV 591

Query: 609 DST-----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VA 662
           D         L   + +G       +E     + G   + +   +++  V    G+  + 
Sbjct: 592 DPEKRNDSHFLFFTTVQGVVKRTSVTEFGNIRKNGLKAITLREGDELLNVSITDGNQNII 651

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +       + FS + + +M R   GVR    +D   + V    +         + + Y +
Sbjct: 652 IGTHGGYAVSFSENAVRQMGRTASGVRGIRLRDDDYA-VGSDVLKPDSNVFVISEKGYGK 710

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +  RGG G        ++G    
Sbjct: 711 QTPASDYPIKGRGGKGIKTSNITEKNGSLAG 741



 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 7/150 (4%)

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +++ T G      + N +   G   +    I L  +   V + V      + V+S KG  
Sbjct: 650 IIIGTHGGYAVSFSENAVRQMGRTASGVRGIRLRDDDYAVGSDVLKPDSNVFVISEKGYG 709

Query: 624 FIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
                S+     R GK      +   +   +  +  V G + + V+ +   ++ F++  +
Sbjct: 710 KQTPASDYPIKGRGGKGIKTSNITEKNG-SLAGLTIVDGTEDIMVITDKGVMIRFNVKSV 768

Query: 679 PEMSRGK-GVRLQSYKDGGISDVICFKICE 707
               R   GV L +  D      I     E
Sbjct: 769 STTGRSTMGVHLINLDDDAKVSTIAKVEPE 798



 Score = 42.1 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 2/104 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               + ++S  G     PA +       G+ I+       N  +    + D T  ++V++
Sbjct: 696 PDSNVFVISEKGYGKQTPASDYPIKGRGGKGIKTSNITEKNGSLAGLTIVDGTEDIMVIT 755

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
            KG         +    R   G   + +  + K+  + KV  + 
Sbjct: 756 DKGVMIRFNVKSVSTTGRSTMGVHLINLDDDAKVSTIAKVEPEQ 799


>gi|319776149|ref|YP_004138637.1| DNA gyrase subunit A [Haemophilus influenzae F3047]
 gi|317450740|emb|CBY86960.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae F3047]
          Length = 880

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/816 (31%), Positives = 400/816 (49%), Gaps = 73/816 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ ++F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETINFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F           +         A   
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQED 535

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   KE D ++  L A+T D IL  S+ G+
Sbjct: 536 VVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGR 595

Query: 572 AYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +
Sbjct: 596 LYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKI 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +E       G   L +  E+++  V    G + + +     +++ F+ + +  M R  
Sbjct: 656 ALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLA 715

Query: 685 KGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGR 717
            GVR                               D  I  V+   + +G    + +   
Sbjct: 716 TGVRGIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEGAILTATQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK +++
Sbjct: 776 GYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 8/121 (6%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V      +L  +  G     + SE    +R  K  + +       K+    
Sbjct: 753 NIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 812

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKICEGL 709
           +V   D + ++ +   L+   + ++  + R  +GVRL    D         +C    E  
Sbjct: 813 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLERVCDADEEDS 872

Query: 710 T 710
            
Sbjct: 873 L 873


>gi|239624128|ref|ZP_04667159.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520514|gb|EEQ60380.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 853

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/762 (31%), Positives = 398/762 (52%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHDVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  + +D VDF   ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADIGKDTVDFVPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++EI  A + +IDN      E S+E+++E + GPDFPTG  I+  R SI E+YR GR  
Sbjct: 187 NLREIISAVVKMIDNQVEEDRETSLEEIMEIVKGPDFPTGATIL-GRRSIEEAYRTGRAK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA   +E +  G   I+VTE+PY V K+RLIEKIA+L+  K+I  +  I DES  + 
Sbjct: 246 IKVRAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  +   + ++  F + M  L     P+V+ L  +L E+L H+ 
Sbjct: 306 MRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALID-NQPKVLNLHQMLDEYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  ILKGLLIA  +IDE+I IIR        K  ++ RF L++ 
Sbjct: 365 EVVRRRTQYDLNKAEERAHILKGLLIALDHIDEVIRIIRGSSNVADAKNQLMERFGLSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   LLA+ E++ ++L   K+    I  EI+ + + +
Sbjct: 425 QSQAIVDMRLRALTGLEREKLENEYKELLAKIEELQAILADVKKLLTVIKEEIQIIADKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSV 538
                   RRT        D     + +I  E   + +++ G+I+ +             
Sbjct: 485 GD-----DRRTAI----GYDDDVSMEDLIPDEDTVIAMTHLGYIKRMDVDNFRSQNRGGK 535

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +  +   E D ++  L       ++  +  G+ Y L A  +        G AI  L+ L
Sbjct: 536 GIKGMQTIEEDYIEDLLMTTNHHFMMFFTNKGRVYRLKAYEIPEAGRTARGTAIINLLQL 595

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y+    L + +  G        E     + G   + +  ++++  V
Sbjct: 596 QPDEKITAIIPMREYNEDKYLFMATRNGMVKKTPMVEYEHVRKNGLQAIVLREDDELIEV 655

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
                +  + +V      + F+   +    R   GV    +++      +  +  +G + 
Sbjct: 656 KATDNNQDIFLVTRKGMCIRFNETDVRVTGRVSMGVIGMRFEEDDEVIGMQME-SQGESL 714

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +     +           RGG G +  K   ++G  + +
Sbjct: 715 LIVSENGMGKRTVISEFSAQNRGGKGVICYKCTEKTGNIVGA 756



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 62/204 (30%), Gaps = 6/204 (2%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
            +   +   +       ++     +         L A+  +E D L           I L
Sbjct: 607 MREYNEDKYLFMATRNGMVKKTPMVEYEHVRKNGLQAIVLREDDELIEVKATDNNQDIFL 666

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
           ++  G        ++         +  +     + +++   +      LL+VS  G    
Sbjct: 667 VTRKGMCIRFNETDVRVTGRVSMGVIGMR-FEEDDEVIGMQMESQGESLLIVSENGMGKR 725

Query: 626 VEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM 681
              SE  A  R GK  +     EK   +     V  G  + ++     ++  S+D I  +
Sbjct: 726 TVISEFSAQNRGGKGVICYKCTEKTGNIVGAKLVNDGREIMLITTEGIVIRMSVDDISII 785

Query: 682 SR-GKGVRLQSYKDGGISDVICFK 704
            R   GV+L +        V    
Sbjct: 786 GRNTSGVKLMNIDQESDIKVASIA 809


>gi|9230557|gb|AAF85899.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           +++I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DENIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|332520258|ref|ZP_08396720.1| DNA gyrase, A subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332043611|gb|EGI79806.1| DNA gyrase, A subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 843

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/763 (31%), Positives = 403/763 (52%), Gaps = 36/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRASSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN EI I++L+++I  PDFPTGG I    + + E++  GRG   +R 
Sbjct: 185 NLTEVVDGTIAYIDNHEIEIDELMQHIKAPDFPTGGTIY-GYDGVKEAFHTGRGRIVMRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +EEV +G  CI+VTEIPYQV K+ +I+K A+LI  K++  +  IRDES  +   +++
Sbjct: 244 NANIEEV-QGRECIIVTEIPYQVNKADMIKKTADLINDKKLEGISSIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L     PQ++ L  ++  ++ HR EV+ R
Sbjct: 303 VLKRDAIPNIVLNKLYKYTALQSSFSVNNIALV-NGKPQLLNLKELIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IA+IR              RF L+E Q  AI
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEARSKLIERFELSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E + L+   E +  +L+   ++ + I  E++ V++ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEELMKTIEDLKDILDKKDRRMSIIKEELQLVRDKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+       A      + MI  E + + IS+ G+I+              V   A 
Sbjct: 480 ---RRSKI---EYAGGDLSIEDMIPDEKVVITISHAGYIKRTSLTEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             +  D L+          +L  +  GK + +    +  G    +  AIQ LI++  +  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSKTSKGRAIQNLINIEQDDK 593

Query: 602 IVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           ++                  +++ + KG        +       G   + +  ++ +   
Sbjct: 594 VMAFICTQDLKDEEYVNNHYVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEDDVLLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT- 710
              TG+  V +  ++ K + F   +   M RG  GVR    +D    +VI       +  
Sbjct: 654 KLTTGESQVMLALKSGKAIRFEEAKTRPMGRGASGVRGIRLQDEKTDEVIGMIAVNDMDS 713

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +   Y +  +     +  RGG G        ++G  +S
Sbjct: 714 NILVVSENGYGKRSSLEDYRITNRGGKGVKTISITEKTGNLVS 756



 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 80/262 (30%), Gaps = 9/262 (3%)

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               +    +         I+ +  I      +    T   ++   +       ++  + 
Sbjct: 563 FWMRVYEIPEGSKTSKGRAIQNLINIEQDDKVMAFICTQ--DLKDEEYVNNHYVIMATKK 620

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             V  ++       +++ ++   +   +   L+  L    +  +L L +        A  
Sbjct: 621 GQVKKTSLEQYSRPRTNGINAITIKEDDVL-LEAKLTTGESQVMLALKSGKAIRFEEAKT 679

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKG 638
              GRG      + +      +++     +     +LVVS  G        +     R G
Sbjct: 680 RPMGRGASGVRGIRLQDEKTDEVIGMIAVNDMDSNILVVSENGYGKRSSLEDYRITNRGG 739

Query: 639 KTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK 693
           K      +   +   + +      D + ++ ++   +  ++  +  M R  +GV+L + K
Sbjct: 740 KGVKTISITEKTGNLVSIKNVTDEDDLMIINKSGIAIRMAVADLRVMGRATQGVKLINLK 799

Query: 694 DGGISDVICFKICEGLTWIDSA 715
                  +   + E    +D  
Sbjct: 800 GKDSIAAVAKVMHEEEEVVDET 821


>gi|330998923|ref|ZP_08322650.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859]
 gi|329576137|gb|EGG57656.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859]
          Length = 955

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/790 (28%), Positives = 379/790 (47%), Gaps = 53/790 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
              + +SL   ++  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+   +    KK
Sbjct: 68  NKAEPISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQHKK 127

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD + Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTE 
Sbjct: 128 SARVVGDVIGKYHPHGDAAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRYTEV 187

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +++  +L+G+DEDAVDF   Y+    EP V P+ FP LL NG++GIAVGMAT+IP H
Sbjct: 188 RLKKLSSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNIPPH 247

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E   A L ++ NPE +I+++++ +  PDFPTGGI+      + E+YR GRG   +RA
Sbjct: 248 NLRETVNACLLVLRNPECTIDEIIKVMPAPDFPTGGILY-GLSDVHEAYRTGRGKAIIRA 306

Query: 255 RWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +  +EE   G+   I++ EIPYQV K  L+EKIA+L+  K+I  +  +RDES ++    +
Sbjct: 307 KTHIEEWDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMRGV 366

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++  ++  + ++  F +N+  L     P+ + +  IL E+L+ RREV+ 
Sbjct: 367 IELKRGANANVVLNLLYKNTQLQDSFGINLVALV-NGQPKQLNIKEILVEFLSFRREVVT 425

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLN-----------------IDEIIAIIRNEDKPKPV 416
           R + FR      RV +++G  IA  N                  + ++       +   +
Sbjct: 426 RVTMFRRDKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAEM 485

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+  Q   IL +RL+SL  LE+ +I +E   
Sbjct: 486 IKRANLDKKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEYKE 545

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L+     +  +L   ++    IA  +  V   F                ++      +  
Sbjct: 546 LVDTIIDLTDILAKPERVTAIIADSLETVAAEFGDERKTQIVANAENVKTKDLIPLREMV 605

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +   +   +        R+ K       A   KEGD +     A T D +L  +  G+ +
Sbjct: 606 VTLTDTGYIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLCFTNKGRLH 665

Query: 574 TLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIV 626
            L   ++  G    +   I  +++L  ++ +                + + ++ G     
Sbjct: 666 WLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAVLPISDEDYAKDLYIFMATADGTVKKT 725

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK 685
              +     R G   + +   + +       G H V +  +N K++ FS D++  M R  
Sbjct: 726 PIGDFKNQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEVRAMGRAA 785

Query: 686 -GVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            GVR     +G  +  ++     E +T + +    Y +           RG  G +  + 
Sbjct: 786 TGVRGMRLDEGQKVISMLVCGDDEDVTVLTATEFGYGKRSPLAEYTRHGRGTKGIISIQT 845

Query: 744 FPRSGKFLSS 753
             R+GK +S+
Sbjct: 846 TERNGKVVSA 855



 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 62/475 (13%), Positives = 151/475 (31%), Gaps = 25/475 (5%)

Query: 231 IIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
            +VE +   + +        R  A   + E           E    ++++ L +K     
Sbjct: 440 YLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAEMIKRANLDKKFLRPE 499

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
                  L D        ++     + R      L +     ++ +      +++  +  
Sbjct: 500 DEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKI-HAEYKELVDTIIDLTDILA 558

Query: 351 VPQVMPL---DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            P+ +     D +         E   +  +       + +  L+ +++   +   I +  
Sbjct: 559 KPERVTAIIADSLETVAAEFGDERKTQIVANAENVKTKDLIPLREMVVTLTDTGYIKSQA 618

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
             E + +          + +   I+N     +    +  +       L      D    S
Sbjct: 619 SIEYRAQKRGGQGKRAAQMKEGDIINQLF--VATTHDVLLCFTNKGRLHWLNVWDVPEGS 676

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
              +   I   +    +          + T    +S  D A      +     TV  +  
Sbjct: 677 SSSKGRPIVNMLELTDDE---------KVTAVLPISDEDYAKDLYIFMATADGTVKKTPI 727

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           G  ++ +     ++A++  EGD L  A        ++L S +GK        + +     
Sbjct: 728 GDFKNQRR--AGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEVRAMGRAA 785

Query: 588 EAIQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
             ++ +  L+  Q +++  V   D    +L  +  G       +E   + R  K  + + 
Sbjct: 786 TGVRGMR-LDEGQKVISMLVCGDDEDVTVLTATEFGYGKRSPLAEYTRHGRGTKGIISIQ 844

Query: 646 SEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           + E+   +   + V   D + ++    KL+   +++I  + R  +GV L S ++G
Sbjct: 845 TTERNGKVVSALLVKENDEIILLTSTGKLVRTRVNEIRVLGRNTQGVTLISMEEG 899


>gi|257485847|ref|ZP_05639888.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320323352|gb|EFW79440.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327549|gb|EFW83561.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|331012936|gb|EGH92992.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 928

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/834 (30%), Positives = 412/834 (49%), Gaps = 104/834 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE++I++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++  E   
Sbjct: 422 VEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +LNS  +    I  E+  ++  +  +     RRT   +   A        
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELEVIRSEYGDA-----RRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +L+
Sbjct: 534 LITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLM 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----------- 612
            S+ GK Y L    +        G  +  L+ L+  + I T    D              
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEA 653

Query: 613 -------------------------------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                                           + + ++ G                G   
Sbjct: 654 LEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIA 713

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           L++   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    
Sbjct: 714 LELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLI 773

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLI-PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++L  S +
Sbjct: 732 QEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMR-LPEGQKLISMLIPEEGSQILTASER 790

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L+   + 
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVG 850

Query: 677 QIPEMSR-GKGVRLQSYKDGG 696
           ++  + R  +GV L       
Sbjct: 851 EVSSLGRNTQGVTLIKLASDE 871


>gi|291548763|emb|CBL25025.1| DNA gyrase subunit A [Ruminococcus torques L2-14]
          Length = 849

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/770 (31%), Positives = 398/770 (51%), Gaps = 37/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MEDN---IFDKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   ++++ VDF   ++E + EP V PS+FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMEMTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E+  A + +ID+      E +IE++LE + GPDFPTG  I+     I 
Sbjct: 178 GMATNIPPHNLREVISAVVQIIDDQIADKEETTIEEILEIVKGPDFPTGAEIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + D
Sbjct: 237 EAYRTGRGKIRVRAVTNIEPMQNGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D+S  +   +     R ++P++++  ++  + ++  F + M  L     P+VM L  +
Sbjct: 297 LSDQSNREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVD-NQPKVMNLLEM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           L+ +L H+ +V+ RR+ + +     R  IL+GLLIA  NIDE+I IIR     +      
Sbjct: 356 LQYYLRHQEDVVTRRTQYDLNKAQERAHILEGLLIALDNIDEVIRIIRGSKNVQEAKAEL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF L++ Q  AI+++RLR+L  LE  +I++E   L+ + E+  ++L   K     I  
Sbjct: 416 IKRFGLSDVQAQAIVDMRLRALTGLEREKIEAEYAELMKKIEEYKAILADKKLLLGVIKK 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           EI  + E +        RRT        +     + +I +E + + ++  G+I+ +    
Sbjct: 476 EILVIAEKYGD-----DRRTKI---GFDEFDISMEDLIPRENVVITMTKLGYIKRMSMDT 527

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   E D ++      +   I+  +  G+ Y L A  +        G
Sbjct: 528 FKSQNRGGKGIKGMQTLEDDYIRELFITTSHHYIMFFTNTGRVYRLKAYEIPEAGRTARG 587

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            AI  L+ L   + I        Y+    L + + KG        +     + G   + +
Sbjct: 588 TAIINLLQLMPEEKITAIIPLREYEEGKYLFMATEKGLVKKTPIQDYANVRKTGLAAIVL 647

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++K+  V      + + +V +    + F+   +    R   GVR  +  D  +   + 
Sbjct: 648 REDDKLIEVKITDNTEDIFLVTKYGMCIRFNETDVRSTGRVSMGVRGMNLTDNDVVIGMQ 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +G   +  + R   +  +        RGG G    K   ++G  + 
Sbjct: 708 IE-SQGKDMLIVSERGMGKRTDMDEFTRQNRGGKGVKCYKITEKTGNVVG 756



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 8/152 (5%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
              T+ I L++  G        ++ S       ++ + +L  N  ++   +      +L+
Sbjct: 659 TDNTEDIFLVTKYGMCIRFNETDVRSTGRVSMGVRGM-NLTDNDVVIGMQIESQGKDMLI 717

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLL 671
           VS +G     +  E     R GK      +   +   +  +  V  D  + ++     ++
Sbjct: 718 VSERGMGKRTDMDEFTRQNRGGKGVKCYKITEKTGN-VVGMKAVDEDSEIMIINTEGIII 776

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
                 I    R   GV+L + K+      + 
Sbjct: 777 RMKCSDISVYGRITSGVKLINLKENDTVASVA 808



 Score = 44.4 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 47/436 (10%), Positives = 129/436 (29%), Gaps = 16/436 (3%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + ++   R  +     +A               + ++  +       EKI          
Sbjct: 396 DEVIRIIRGSKNVQEAKAELIKRFGLSDVQAQAIVDMRLRALTGLEREKIEAEYAELMKK 455

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + E     + + + + +  K   +  +   +        +       ++     +P+   
Sbjct: 456 IEEYKAILADKKLLLGVIKKEILVIAEKYGDDRRTKIGFD-----EFDISMEDLIPRENV 510

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           +  + K     R  +   +S  R     + ++ L+   I  L I      I        V
Sbjct: 511 VITMTKLGYIKRMSMDTFKSQNRGGKGIKGMQTLEDDYIRELFITTSHHYIMFFTNTGRV 570

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              +               + +L +L   +  + +  L   +E     + + K    +  
Sbjct: 571 YRLKAYEIPEAGRTARGTAIINLLQLMPEEKITAIIPLREYEEGKYLFMATEKGLVKKTP 630

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            +          +  + R      EV   D    +   +  +    +  N   +RS    
Sbjct: 631 IQDYANVRKTGLAAIVLREDDKLIEVKITDNT--EDIFLVTKYGMCIRFNETDVRSTGRV 688

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S+ +  ++  + D +           +L++S  G                G+ ++     
Sbjct: 689 SMGVRGMNLTDNDVVIGMQIESQGKDMLIVSERGMGKRTDMDEFTRQNRGGKGVKCYKIT 748

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVV 654
               ++V     D   ++++++++G    ++ S+I    R   G   + +   + +  V 
Sbjct: 749 EKTGNVVGMKAVDEDSEIMIINTEGIIIRMKCSDISVYGRITSGVKLINLKENDTVASVA 808

Query: 655 K-------VTGDHVAV 663
           K       + G+ V +
Sbjct: 809 KVRKASAEIDGEEVEI 824


>gi|312871293|ref|ZP_07731391.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311093307|gb|EFQ51653.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 815

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/765 (29%), Positives = 400/765 (52%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQN--QDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+ +L+  I GPDFPTGG I+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGG-IIMGRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +     P V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVD-GSPHVLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR           +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISD--SEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 LHF--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                      +  D +   ++ +T D +L  +  GK Y+  +  +       +   I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   +++         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGENVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-M 650
           I L  N  +V + + D   ++LV+S KG       SE    +R   G     V+ +   +
Sbjct: 692 IKLRANDYVVGSSIVDDNSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPL 751

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKICE 707
             V  V G + + ++ +   ++   +D + +  R   GVRL     G  ++ +   K  +
Sbjct: 752 VGVTVVDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811

Query: 708 GLTW 711
               
Sbjct: 812 NSEI 815


>gi|9230555|gb|AAF85898.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/760 (31%), Positives = 399/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----QRRTEL--MVGEVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRYGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASV-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSG 750


>gi|256830857|ref|YP_003159585.1| DNA gyrase subunit A [Desulfomicrobium baculatum DSM 4028]
 gi|256580033|gb|ACU91169.1| DNA gyrase, A subunit [Desulfomicrobium baculatum DSM 4028]
          Length = 848

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/754 (33%), Positives = 406/754 (53%), Gaps = 28/754 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +S+   L++ YL Y+LS I  RAIPD+RDG KPVHRRI+ AM E+G  +  A+KKSAR+
Sbjct: 3   NISIEKELQKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELGNTYNRAYKKSARV 62

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+IDGDSAAA RYTE RM++
Sbjct: 63  VGDVIGKFHPHGDSAVYDALVRMAQEFNMRDPLVDGQGNFGSIDGDSAAAMRYTEVRMSK 122

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A   L  +++D V+FR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 123 LAGSFLADIEKDTVEFRPNYDNSLQEPSVLPTKVPNLLVNGSSGIAVGMATNIPPHNLGE 182

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+D+P++SI++L++YI  PDFPTG  ++  +  I E+YR GRG  R+R+R  +
Sbjct: 183 VVDGTLRLLDDPQMSIDELMQYIKAPDFPTGA-LIYGKAGIREAYRTGRGSVRIRSRIEI 241

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+       IVV EIPY + KS L+EKIA L+  ++I  + D+RDES      ++    +
Sbjct: 242 EKRKGDLESIVVKEIPYALNKSTLVEKIAMLVNERKIEGISDLRDESDMKGIRIVMDLKK 301

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +  D+++  +F  + +ET F +NM  +     PQ++ +  +L+ +L +RREV+ RRS F
Sbjct: 302 GVFSDVIVNQLFKFTSLETSFGINMMAVV-NNRPQLLNVKQVLEYFLDYRREVVIRRSRF 360

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLR 435
            ++    R  IL+GL IA   IDE++A+IR    P+     +  RF L+E Q  AIL++R
Sbjct: 361 DLRKAQHRAHILEGLRIALDFIDEVVALIRASKTPQEAKERLRERFGLSEIQAQAILDMR 420

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  ++  E   LL + E + S++ + +   + I  E++++++ F+       R
Sbjct: 421 LQRLTNLEREKLLEEYAELLKQIEYLTSVIENTEVLKSVIRQELQDLRDNFATP-----R 475

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKE 547
           ++     +    +   + +I  EP+ + +S  G+++     +          ++ +   E
Sbjct: 476 KSEIL--AHDPDSIDIEDIIPDEPVVITLSRNGYLKRTSLDNYRQQRRGGTGITGVQVAE 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D +   L       + L S  GK Y +    +        G+ +  L+ L+ N+ I  A
Sbjct: 534 EDFITFILTTSNHQYMNLFSNKGKMYQVKVHQIPEGGRTARGKHVANLLPLDSNEYIAAA 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHV 661
                 D        +  G                G   L +  ++++  V +V T D +
Sbjct: 594 MTCRDLDQEKFYFFYTKLGVVKRSSVHLYRNIRAVGLIALGMRDDDELIGVREVETNDEM 653

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSY 719
            +V  +   + F+   +  M R   GV+  + + G  +   +          +  A   Y
Sbjct: 654 VLVTVDGYSIRFACSDVRAMGRTATGVKGLALRKGDQVVAGVVVNKDTQQELLTIAENGY 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           RGG G +  +  P++GK + +
Sbjct: 714 GKRTQVEHFRAQSRGGKGIINMRITPKTGKVVGA 747



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +V L AL  ++ D L       T D ++L++ DG +      ++ +       +   
Sbjct: 624 NIRAVGLIALGMRDDDELIGVREVETNDEMVLVTVDGYSIRFACSDVRAMGRTATGV-KG 682

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEE 648
           + L     +V   V +     +LL ++  G     +     A +R GK  + +       
Sbjct: 683 LALRKGDQVVAGVVVNKDTQQELLTIAENGYGKRTQVEHFRAQSRGGKGIINMRITPKTG 742

Query: 649 KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD 699
           K+   + V   D + ++    K++   I  I  + R  +GVRL   +D     
Sbjct: 743 KVVGAMMVYPTDELILLTSGSKIIRIGISDISLVGRATQGVRLVRLEDEQTVV 795


>gi|218961618|ref|YP_001741393.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans]
 gi|167730275|emb|CAO81187.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans]
          Length = 874

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/774 (33%), Positives = 405/774 (52%), Gaps = 41/774 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +      N+  V +   L++ YL Y++S I  RA+PD+RDG KP  RRII+AM E+ 
Sbjct: 1   MSETT-----NIIPVQIEEQLKQAYLDYSMSVIVSRALPDIRDGLKPSQRRIIYAMHELN 55

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  G+ F+K A+I G+  G  HPHG+Q VY +LVRLAQP++ RYPLI GQGNFG+IDGD 
Sbjct: 56  LTPGSHFRKCAKIAGDTSGNYHPHGEQVVYPTLVRLAQPWIMRYPLIEGQGNFGSIDGDP 115

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ ++   +L  +++D V+FR  Y+E   EP VFP++FPNLL NG+SGIAV
Sbjct: 116 PAAMRYTEARLQKITMEMLTELEKDTVEFRSNYDETRQEPTVFPARFPNLLVNGSSGIAV 175

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+C+A +ALIDNP++    LLEYI GPDFPTGG I+   E I E +  
Sbjct: 176 GMATNMPPHNIGEVCDAIIALIDNPDLQPLDLLEYIKGPDFPTGGFIL-GTEGIREYFET 234

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R    +E +      I++  IPYQ+  S+LIE++ EL+  K+I  + DIRDES
Sbjct: 235 GRGKIIMRGETEIETLPNDIEQIIIRSIPYQLSTSQLIERMVELVKDKKIEGISDIRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R+ D  ++   ++  + +++ F +    L    VPQV+ +  +L+ ++
Sbjct: 295 GRDGMRIVIQVKRNHDAQVVRNLLYKYTQLQSTFGVINLCLID-GVPQVVNMKEMLQNFI 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
             R EV+ RR+ F ++    R+ IL+GL IA  N+DE+IA+IR    P         +F 
Sbjct: 354 DFRHEVVLRRTQFDLRNAKERLHILEGLKIALDNLDEVIALIRASQTPNDASVGLQEKFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I++E   LL    ++  L+   + + N I  E  E+
Sbjct: 414 LSEIQAKAILDMRLQRLTGLERDKIETEYQELLIIIARLTELVEHKELRMNLIKEETAEI 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           ++ F+      +R TT         +   + +I  E + V I++ G+++ L   +     
Sbjct: 474 RDKFAD-----KRLTTIIPAPAG--SFNMEDLIADEMVVVTITHDGYVKRLPVDTYKVQA 526

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                LSA + KE D ++    A T   ILL +  G  Y L    +        G+AI  
Sbjct: 527 RGGKGLSASNLKEEDFIQYLFVASTHSYILLFTDHGMCYWLKVFEIPEASRTARGKAIVN 586

Query: 593 LIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L     I   VT   +     +++ +  G       +        G   +K+   ++
Sbjct: 587 LVKLAEGDRIKAFVTLKDFHPEQNIVMCTRNGLVKKTPLTAFSHPRSIGIKAIKLREGDE 646

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +        GD + +   + K   FS  +I  M R  +GV+    ++G     +     +
Sbjct: 647 LIDARICEAGDDILLATHDGKCNRFSESEIRSMRRFSQGVKGIRLRNGDYVISMTIATAQ 706

Query: 708 G---------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                      T +  + + Y +        + +RG +G +  K   R+G   +
Sbjct: 707 DQLENGKPNSSTILAISEKGYGKRSPISSYSVTRRGSMGVITLKTNERNGYLAA 760



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 69/191 (36%), Gaps = 20/191 (10%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S+ + A+  +EGD L  A      D ILL + DGK        + S R   + +   
Sbjct: 630 HPRSIGIKAIKLREGDELIDARICEAGDDILLATHDGKCNRFSESEIRSMRRFSQGV-KG 688

Query: 594 IDLNHNQDIVTAFVYDSTCKL----------LVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           I L +   +++  +  +  +L          L +S KG       S      R     + 
Sbjct: 689 IRLRNGDYVISMTIATAQDQLENGKPNSSTILAISEKGYGKRSPISSYSVTRRGSMGVIT 748

Query: 644 VSSEEK------MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           + + E+      + LV     D + ++ +   ++   + +I  + R   GVRL +     
Sbjct: 749 LKTNERNGYLAALMLVR--DDDDLMIITQGGMIIRQRVSEISVVGRNTLGVRLINLAPND 806

Query: 697 ISDVICFKICE 707
           +   I     E
Sbjct: 807 VVRDISLVHSE 817


>gi|309805915|ref|ZP_07699947.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b]
 gi|308167691|gb|EFO69838.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b]
          Length = 815

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/765 (29%), Positives = 400/765 (52%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQN--QDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+++L+  I GPDFPTGG I+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGG-IIMGRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +     P V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVD-GSPHVLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR           +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISD--SEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 LHF--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                      +  D +   ++ +T D +L  +  GK Y+  +  +       +   I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTTNVTEKNGPLVG 753



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-M 650
           I L  N  +V + + D   ++LV+S KG       SE    +R   G     V+ +   +
Sbjct: 692 IKLRANDYVVGSSIVDDNSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTTNVTEKNGPL 751

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKICE 707
             V  V G + + ++ +   ++   +D + +  R   GVRL     G  ++ +   K  +
Sbjct: 752 VGVTVVDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811

Query: 708 GLTW 711
               
Sbjct: 812 NSEI 815


>gi|302384450|ref|YP_003820272.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1]
 gi|302195078|gb|ADL02649.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1]
          Length = 853

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/758 (30%), Positives = 380/758 (50%), Gaps = 21/758 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHDVDLKKTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF   ++E + EP V PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFSPNFDETEREPDVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      E ++E++LE I GPDFPTG  I+  +  I E+YR GRG 
Sbjct: 187 NLREVISAVVHIIDNQVEENRETTMEEILEIIKGPDFPTGATIL-GKRGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K++  + D+RDES    
Sbjct: 246 IRVRAVSDIEAMANGKNRIIVTELPYMVNKARLIEKIAELVKDKKVDGITDLRDESDRSG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQVMPLDGILKEWL 365
             +     R  + ++++  +   + ++  F + M  L         P+V+ +  +L  +L
Sbjct: 306 MRICIELRRDANANVVLNQLIKHTQLQDTFGVIMLALVKNSAGVLEPKVLNILQMLNYYL 365

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H++EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR  +  +      +SRF 
Sbjct: 366 DHQKEVVTRRTRYDLNKAEERAHILQGLLIALDNIDEVIRIIRGSENVQAAKAELMSRFG 425

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AI+++RLR+L  LE  ++++E   L A   ++ S+L   K+    I  EI  +
Sbjct: 426 LSDVQSQAIVDMRLRALTGLEREKLENEYRELEARIAELKSILADEKKLLGVIKEEISII 485

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +            F              +   +   +   +    ++       +  
Sbjct: 486 SAKYGDDRRTSIGFDEFDMSMEDLIPDESTIVAMTKLGYIKRMSVDNFKNQNRGGRGIKG 545

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
           +   + D ++  +   T   ++  +  G+ Y L    +        G AI  L+ +   +
Sbjct: 546 MQTIDQDYIEDLMMTTTHHYLMFFTNTGRVYRLKTYMIPEGSRTSRGTAIVNLLQMLPGE 605

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        YD    L + +  G        E     + G   + +   +++  V    
Sbjct: 606 SITAIIPMKEYDDDKFLFMATRNGMVKKTPMMEYANVRKNGLQAIVLRENDELIEVKATD 665

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + +V +  + + F    +    R   GV      +     V   K  +G   +  +
Sbjct: 666 DTKDIFLVTKKGQCIRFHEKDVRITGRVSMGVIGMKLNEDDQV-VGMQKESQGPKLLIVS 724

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +          +RGG G L  K   ++G  + +
Sbjct: 725 ANGMGKRTPIEEFTPQRRGGKGVLCYKITEKTGDIVGA 762



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 81/278 (29%), Gaps = 21/278 (7%)

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            +     Y +       +   +       S   +   I   ++ +          G   T
Sbjct: 558 MMTTTHHYLMFFTNTGRVYRLKTYMIPEGSRTSRGTAIVNLLQML---------PGESIT 608

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
               +        +   +      V  +      +++ +   L A+  +E D L      
Sbjct: 609 AIIPMKE--YDDDKFLFMATRNGMVKKTPMMEYANVRKN--GLQAIVLRENDELIEVKAT 664

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
             T  I L++  G+       ++         +  +  LN +  +V         KLL+V
Sbjct: 665 DDTKDIFLVTKKGQCIRFHEKDVRITGRVSMGVIGM-KLNEDDQVVGMQKESQGPKLLIV 723

Query: 618 SSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDH-VAVVGENRKLLI 672
           S+ G        E     R GK      +   + + +     V  DH + ++     ++ 
Sbjct: 724 SANGMGKRTPIEEFTPQRRGGKGVLCYKITEKTGD-IVGAKLVEDDHDLLLITTEGIVIR 782

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            S++ I  + R   GV+L +        V         
Sbjct: 783 ISVNDISVIGRNTSGVKLMNIDQDSDITVASIAKVRDD 820


>gi|327405246|ref|YP_004346084.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823]
 gi|327320754|gb|AEA45246.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823]
          Length = 861

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/761 (29%), Positives = 400/761 (52%), Gaps = 26/761 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR+++ M ++G+     +KK
Sbjct: 5   EKIIQINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMQDLGVYSNRPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRMAQSWSLRYPLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++AE +L  ++++ VDF   +++   EP V PSK PNLL NG SGIAVGMAT++  H
Sbjct: 125 RLRKIAEEMLDDLEKETVDFAPNFDDSLQEPTVLPSKIPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A +  +DN +I  E+LL+++  PDFPTGG I+   +   ++   GRG   +RA
Sbjct: 185 NLGEVVDAIIGYVDNKDIEDEELLQFVKAPDFPTGG-IIYGVDGARDALLTGRGRIVIRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE G G   I+VTEIPYQV K+ +I+K A+L+  K+I  + DIRDES  +   +++
Sbjct: 244 KAEIEESG-GREQIIVTEIPYQVNKADMIKKTADLVNDKKIEGISDIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L     P+++ L  ++ E++  R EV+ R
Sbjct: 303 ELKRDAIPNVVLNKLYKYTSLQSSFSINNICLVD-GRPRLLNLREMITEFVKFRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IAIIR+    ++ +  ++ RF+L++ Q  AI
Sbjct: 362 RTKYDLRKAEERAHILEGLIIASDNIDEVIAIIRSSKSPEEARERLMERFALSDLQSRAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E  +L+A    +  +L   +++   I  E+ +++  +  +  
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYADLMALITDLKDILAREERRMQIIKDELIDIRTKYGDARR 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                +             +  +       +  +N    +      +       ++ D L
Sbjct: 482 SRIEYSASEMKIEDLIPDEEVVITISHAGYIKRTNLDEFKVQSRGGMGSKGSTTRDKDFL 541

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD 609
           +    A   + +L+ +  G+ + +    +  G    +  AIQ L+++  +  I       
Sbjct: 542 EHLFVATNHNYLLIFTEKGRCFWMRVFEVPEGNKTAKGRAIQNLLNIEQDDKIKAYVKVK 601

Query: 610 S--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                       +++ + +G                G   + +   +++       G + 
Sbjct: 602 DLTDKEYVQNNFIVMCTKEGIIKKTSLEAYSRPRANGINAITIRENDELLEARLTDGTNE 661

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-LTWIDSAGRS 718
           + +  +  + + F+  ++  M R   GVR  + ++     V    + +   T +  + + 
Sbjct: 662 MVLATKAGRAIRFNEAKVRPMGRNASGVRAVTLQNDTDEVVGMICVKDNTETIMVVSEKG 721

Query: 719 YNRSENDLL-------GWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +               +  RGG G        ++G  L+
Sbjct: 722 YGKRSFLNDPEDGEPVYRITNRGGKGVKTINITDKTGPLLA 762



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 90/277 (32%), Gaps = 21/277 (7%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +     Y +              +    +   +   I   +   ++   K+    +  T 
Sbjct: 546 VATNHNYLLIFTEKGRCFWMRVFEVPEGNKTAKGRAIQNLLNIEQDDKIKAYVKVKDLTD 605

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              V               +   +  ++       +++   ++A+  +E D L  A    
Sbjct: 606 KEYVQNNFIVMC------TKEGIIKKTSLEAYSRPRAN--GINAITIRENDELLEARLTD 657

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVV 617
            T+ ++L +  G+A       +     +   ++ +   N   ++V      D+T  ++VV
Sbjct: 658 GTNEMVLATKAGRAIRFNEAKVRPMGRNASGVRAVTLQNDTDEVVGMICVKDNTETIMVV 717

Query: 618 SSKGNAFIVEESE-------IIANTRKGKTF--LKVSSEEKMKLVVKV--TGDHVAVVGE 666
           S KG       ++            R GK    + ++ +    L +K     D + ++ +
Sbjct: 718 SEKGYGKRSFLNDPEDGEPVYRITNRGGKGVKTINITDKTGPLLAIKTVADEDDLMIITK 777

Query: 667 NRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
               +   ID I  M R  +GVRL + K       + 
Sbjct: 778 AGVTIRMHIDGIRVMGRAAQGVRLINLKGTAAIAAVA 814


>gi|73916216|gb|AAZ92976.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916222|gb|AAZ92979.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916224|gb|AAZ92980.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916226|gb|AAZ92981.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|153007330|ref|YP_001381655.1| DNA gyrase subunit A [Anaeromyxobacter sp. Fw109-5]
 gi|152030903|gb|ABS28671.1| DNA gyrase, A subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 891

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/788 (31%), Positives = 401/788 (50%), Gaps = 63/788 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++   + + YL Y++S I  RA+PD+RDG KPVHRR+++AM   GL     + K A +
Sbjct: 27  QVAIEDEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 86

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+ K HPHGD SVYD+LVRLAQ +  RYPLI GQGNFG++DGD AAAYRYTE+R+ +
Sbjct: 87  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTESRLER 146

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+ +L  +D++ VD+   +++   EP+V P++FPNLL NG++GIAVGMAT+IP HN+ E
Sbjct: 147 LADFLLADIDKETVDWGPNFDDSTVEPLVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   LI+NP+++I +L+ +I GPDFPT G I++ R+ I  +Y  GRG  +VRAR  +
Sbjct: 207 VLDAVEHLIENPKVTIPELMRFIPGPDFPTAG-IIQGRDGIRAAYEKGRGTIQVRARASI 265

Query: 259 E-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E         IVVTEIPYQV K++L+E IA+L+  KR+  + D+RDES+ +   V+    
Sbjct: 266 EVHPKTERESIVVTEIPYQVNKAKLVEHIADLVREKRLEGISDLRDESSREGMRVVIELK 325

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R     +++ +++  + M+T F + +  +  G  P+++ L  +L+ ++AHRR+V+ RR+ 
Sbjct: 326 RDAVAQVVLNNLYAHTQMQTGFGVTLLAID-GGQPRILNLKELLERFVAHRRDVVTRRTR 384

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAILNL 434
           F ++    R  IL GL IA  ++DEII +IR             +RF+L+E Q  AIL +
Sbjct: 385 FELRKAREREHILLGLQIALDHLDEIIELIRKAPDRDAARDGLITRFALSELQAKAILEM 444

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L+ L  LE  +I  EL  +     ++  +L S K     IA E+REVK++F+       
Sbjct: 445 QLQRLTGLERQKILDELAEVQKIILRLKEILASEKVLMEVIAGELREVKQLFADE----- 499

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT              + +I +E + V +S+ G+++          +      +    +
Sbjct: 500 RRTEIL---GEATDYSTEDLIAEEEMVVTVSHAGYVKRNPVSLYRAQRRGGRGKTGAATR 556

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           + D L+    A T   +L+ S  GK Y L    +        G+ I  L+ L+  + +  
Sbjct: 557 DEDFLESIFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRAARGKPIVNLVQLSQGEKVAA 616

Query: 605 AFVY-------------------------------DSTCKLLVVSSKGNAFIVEESEIIA 633
                                              +    + + + +G        +   
Sbjct: 617 ILPVRRLPEPAGIVEEAEAAAGAEGAEPVEPAAPGEGGQYVFMATRRGLIKKTRLEQFSR 676

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQS 691
               G   L +   +++     + G  HV +       + F    +  M R   GV+  +
Sbjct: 677 PRAAGIIALGIEEADELIAARLIDGKSHVLLSTAQGMAIRFEESDVRAMGRTAYGVKGIT 736

Query: 692 YKDGGISDV---ICFKICEGL---TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            + G        I     +G    T +      Y +        +  RGG G +  K   
Sbjct: 737 LEPGDAVVSAETIPAAPPQGEPAPTILTVTRNGYGKRTELAEYRVQSRGGKGIITIKTTE 796

Query: 746 RSGKFLSS 753
           R+G  +++
Sbjct: 797 RNGPVVAA 804



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 600 QDIVTAFV-YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVK 655
           + I  A    +    +L V+  G     E +E    +R GK  + + + E+   +     
Sbjct: 747 ETIPAAPPQGEPAPTILTVTRNGYGKRTELAEYRVQSRGGKGIITIKTTERNGPVVAAAL 806

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVI 701
           V+  + V ++     L+      I  + R  +GVRL +   K+  +  V 
Sbjct: 807 VSDVEEVMLITNGGMLIRMPAKGISVIGRNTQGVRLITLESKEEEVVGVA 856


>gi|166032885|ref|ZP_02235714.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC
           27755]
 gi|166027242|gb|EDR45999.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC
           27755]
          Length = 846

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/770 (31%), Positives = 407/770 (52%), Gaps = 37/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MEDN---IFDKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +KSARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKSARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   +++D VDF   ++E + EPVV P++FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSKISMELTADINKDTVDFMPNFDETEKEPVVLPARFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E+ +A + +IDN      E ++E++LE I GPDFPTGG I+     I 
Sbjct: 178 GMATNIPPHNLREVIDAVVRIIDNKIADKDETTMEEILEIIKGPDFPTGGEIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K++  + D
Sbjct: 237 EAYRTGRGKIRVRAVTNIETMPNGKSRIIVTELPYMVNKARLIEKIAELVRDKKVDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D+S+ +   ++    + ++ ++L+  ++  + ++  F + M  L  G+ P+VM +  +
Sbjct: 297 LSDQSSREGMRIVIELRKDVNANVLLNQLYKHTQLQDTFGVIMLALV-GKQPKVMNILEL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           L  +L H+ +V+ RR+ + +     R  ILKGLLIA  NIDE+I IIR     +      
Sbjct: 356 LGYYLKHQEDVVTRRTKYELNKAKERAHILKGLLIALDNIDEVIRIIRGSSTVQAAKAEL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + +F L + Q  AI+++RLR+L  LE  +++ E   L+A+ E+++++L   K     I  
Sbjct: 416 MEKFELDDVQAQAIVDMRLRALTGLEREKLEKEYAELMAQIERLEAILADEKLLLGVIRE 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           EI  +K+ +        RRT+       +     + +I KE I + ++  G+I+ +    
Sbjct: 476 EILVIKDKYGD-----DRRTSI---GFDEYDISMEDLIPKENIVITMTKLGYIKRMSDDT 527

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   + D ++     +T   I+  +  G+ Y L    +        G
Sbjct: 528 FKAQNRGGKGIKGMQTLDEDYVEELFMTNTHHYIMFFTNTGRVYRLKGYEIPEASRTSRG 587

Query: 588 EAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            AI  L+ L   + I      D       L++ + KG        E +   + G   + +
Sbjct: 588 TAIINLLQLMPGEKITAVIPIDYYRDQDYLIMATKKGLVKKTSLREYMNVRKTGLAAITL 647

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             E+++  V     +  + +  +  + + F+   +    R   GVR  +  D      + 
Sbjct: 648 RDEDELIEVKFTDNNQEIILATKYGQCIRFNETDVRATGRNSMGVRGINLADRDEVIGMQ 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + +G   +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 708 L-VTQGHDLLIVSEKGMGKRTDIHEFTAQNRGGKGVKCYKITEKTGNVIG 756



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 63/182 (34%), Gaps = 6/182 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                  +      L+A+  ++ D L           I+L +  G+       ++ +   
Sbjct: 628 KTSLREYMNVRKTGLAAITLRDEDELIEVKFTDNNQEIILATKYGQCIRFNETDVRATGR 687

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
           +   ++  I+L    +++   +      LL+VS KG     +  E  A  R GK      
Sbjct: 688 NSMGVRG-INLADRDEVIGMQLVTQGHDLLIVSEKGMGKRTDIHEFTAQNRGGKGVKCYK 746

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           +   +   + +      D + ++  +  ++      I  + R   GV+L + KD      
Sbjct: 747 ITEKTGNVIGIKAVDEDDEIMIINTDGIIIRMLCSGISVLGRITSGVKLINLKDKETVAS 806

Query: 701 IC 702
           I 
Sbjct: 807 IA 808


>gi|187250429|ref|YP_001874911.1| DNA gyrase subunit A [Elusimicrobium minutum Pei191]
 gi|186970589|gb|ACC97574.1| DNA gyrase, A subunit [Elusimicrobium minutum Pei191]
          Length = 840

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/775 (33%), Positives = 413/775 (53%), Gaps = 37/775 (4%)

Query: 6   ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +S       +   N+K+  +   ++  Y+ YA+S I  RA+PD+RDG KP+HRR+++ M+
Sbjct: 1   MSEKENQSVDLFGNIKSRDIGEEMKRSYIDYAMSVIVGRALPDVRDGLKPIHRRLLYGMN 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           EMGL +  +FKKSAR+VG+V+GK HPHGD ++YDSLVRLAQ F  R  L+ GQGNFG++D
Sbjct: 61  EMGLKYNKSFKKSARVVGDVMGKYHPHGDSAIYDSLVRLAQDFSLRDTLVDGQGNFGSVD 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTE R+ ++A+ +L  +D++ V F D Y+    EP V P+K PNLL NG+SG
Sbjct: 121 GDMAAAMRYTEVRLERIADEMLNDIDKNTVKFMDNYDGSMQEPSVLPAKMPNLLVNGSSG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP+HN+ E+C+A + +I NP ++ ++L+  I GPDFPTG  I+  R+ I + 
Sbjct: 181 IAVGMATNIPTHNLSEVCDAVIEVIKNPGVTTKELMNIIKGPDFPTGA-IICGRKGIFDY 239

Query: 243 YRLGRGGFRVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +  G+G  +V+AR  +EE GR G   IVVTEIPYQV K+ LIE IA L+  K++  + DI
Sbjct: 240 FETGKGSVKVQARAEIEEGGRGGRSAIVVTEIPYQVNKTNLIEAIAGLVKDKKVTDIADI 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      ++    R  D  +++  ++  + ++T F +NM  +     P+++P+  ++
Sbjct: 300 RDESDRRGMRLVIEVKRDGDARVVLNHLYKHTQLQTSFSVNMLAIVD-GRPRILPIKEVM 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--- 418
           K ++ HR+EV+  R+ F +    +R  IL+GLLIA  N+D++I IIR    P        
Sbjct: 359 KCYVKHRKEVVTARTRFDLNKAQKREHILQGLLIAIANLDKVIKIIREAQDPTEAKFALI 418

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             F+L+E Q  AIL++RL  L +L    I+ E   LLA   ++  +L   ++    I  E
Sbjct: 419 REFALSEPQSQAILDMRLHQLTQLSSASIEKEQKELLALIAELKGILEDPQKVLAIIVDE 478

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           ++ +K+ +          T   +++        + +IE+E + + +SN G+ + +   + 
Sbjct: 479 LKGLKKDYGTERKTEISNTELSDMT-------MEDLIEEEDVVITLSNDGYAKRIPLDTY 531

Query: 539 --------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGE 588
                    +     KE D ++      T   IL+ +T G+ ++L A  +  G     G+
Sbjct: 532 RTQNRGGKGVIGGKTKEEDFIEHLFVTSTHATILMFTTRGRVFSLRAYEIPEGNRLSKGK 591

Query: 589 AIQLLIDLNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           AI  L+ +++ + I +A   +           L + +  G    VE  +     + G   
Sbjct: 592 AIVNLLQISNEEKITSAVAIEDFDPKNSGETYLTMCTRFGLIKRVELGDFANIRKSGIIA 651

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           + +   + +  V    G   + +   + K + F  +QI  M R  KGVR        I  
Sbjct: 652 IGLEDGDVLTSVQMTHGKSDLIIATRDGKAIRFDEEQIRAMGRQAKGVRGIRLGKDDIVV 711

Query: 700 VI--CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    K   G   +      Y +           RGG G++  K   R+GK + 
Sbjct: 712 GMEHALKDAPGPDVLSVCENGYGKRTEFTEYRKQNRGGSGTITIKTTERNGKVVG 766



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-D 659
            A        +L V   G     E +E     R G   + + + E+   +  +  V    
Sbjct: 715 HALKDAPGPDVLSVCENGYGKRTEFTEYRKQNRGGSGTITIKTTERNGKVVGIKLVDESK 774

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            + V+ EN   +    ++I  + R  +GVRL    +      I   I +   
Sbjct: 775 DLMVITENGMAVRIRCEEIRSVGRNAQGVRLVKLAESDKIARIAPVIKDNDE 826


>gi|325913623|ref|ZP_08175985.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B]
 gi|325476982|gb|EGC80132.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B]
          Length = 815

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/765 (29%), Positives = 400/765 (52%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQN--QDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+++L+  I GPDFPTGG I+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGG-IIMGRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +     P V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVD-GSPHVLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR           +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISD--SEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 LHF--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                      +  D +   ++ +T D +L  +  GK Y+  +  +       +   I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-M 650
           I L  N  +V + + D   ++LV+S KG       SE    +R   G     V+ +   +
Sbjct: 692 IKLRANDYVVGSSIVDDNSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPL 751

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKICE 707
             V  V G + + ++ +   ++   +D + +  R   GVRL     G  ++ +   K  +
Sbjct: 752 VGVTVVDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811

Query: 708 GLTW 711
               
Sbjct: 812 NSEI 815


>gi|148989241|ref|ZP_01820621.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73]
 gi|147925219|gb|EDK76298.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73]
          Length = 822

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +    ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDVVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|254882014|ref|ZP_05254724.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA]
 gi|254834807|gb|EET15116.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA]
          Length = 840

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/745 (31%), Positives = 393/745 (52%), Gaps = 21/745 (2%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A+KKSARIVGEV+GK
Sbjct: 1   MKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAYKKSARIVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RYTEAR+ ++ E ++Q
Sbjct: 61  YHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTEARLKKIGEEMMQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++P+HN+ E+ +A +A
Sbjct: 121 DLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPTHNLSEVIDACIA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            IDN +I IE L++Y+  PDFPTGG I      + ++Y  GRG   +RA+  + E     
Sbjct: 181 YIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVVMRAKAEI-ETHTTH 238

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V EIPY V K  LIE IA L+  K+I  +  + DES  +   ++    R  +  ++
Sbjct: 239 DKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIVIDVKRDANASVV 298

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F ++ ++T F +N   L     P+++ L  +++ ++ HR +V+ RR+ + ++    
Sbjct: 299 LNKLFKMTALQTSFGVNNIALVH-GRPKMLNLKDLIRYFVEHRHDVVIRRTQYDLRKAQE 357

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q  AI+ +RLR L  L
Sbjct: 358 RAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQARAIVEMRLRQLTGL 417

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
            + Q+ +E + ++ +    + +L++ +     I  E+ EVKE +  +       ++    
Sbjct: 418 MQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELVEVKEKYGDARRSEIVYSSEEFN 477

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                A  Q  +       +  +     R+     V       ++ D ++    A   + 
Sbjct: 478 PEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNT 537

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF--------VYDSTC 612
           ++  +  GK Y L    +  G  + +  AIQ L++++ +  +             + ++ 
Sbjct: 538 MMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSH 597

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLL 671
            +L  +  G        +     + G   + +  ++K+  V    GD  + +   N + +
Sbjct: 598 YVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAI 657

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            F    +  M R   GVR  +  + G   +  +IC K  E  + +  + + Y +  +   
Sbjct: 658 RFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQGYGKRSDIED 717

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
                RGG G        ++GK ++
Sbjct: 718 YRKTNRGGKGVKTLNITDKTGKLVA 742



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 109/386 (28%), Gaps = 30/386 (7%)

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           Q+      + + +A+  E+L      +    D  VE+ +    A     EI+      + 
Sbjct: 421 QLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELVEVKEKYGDARR--SEIVYSSEEFNP 478

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                  +  +T + +  I    L   R      + S+      E         +     
Sbjct: 479 EDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTM 538

Query: 473 NQIAC-----EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                      ++  +         GR       +   D  T    +        + S+ 
Sbjct: 539 MFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHY 598

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL--STDGKAYTLPAGNLLSGRG 585
               +            +       +       D  ++    T+G    + A        
Sbjct: 599 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIR 658

Query: 586 HGEA------------IQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEI 631
             E+              + +D +   +++            ++VVS +G     +  + 
Sbjct: 659 FHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQGYGKRSDIEDY 718

Query: 632 IANTRKGKTFLKVSSEEK---MKLVV-KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KG 686
               R GK    ++  +K   +  +      + + ++ ++   +   + ++  M R  +G
Sbjct: 719 RKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLKVAEVRIMGRATQG 778

Query: 687 VRLQSY--KDGGISDVICFKICEGLT 710
           VRL +   ++  I  V      E +T
Sbjct: 779 VRLINLEKRNDQIGSVCKVTSEEEVT 804


>gi|260592374|ref|ZP_05857832.1| DNA gyrase, A subunit [Prevotella veroralis F0319]
 gi|260535668|gb|EEX18285.1| DNA gyrase, A subunit [Prevotella veroralis F0319]
          Length = 862

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/773 (29%), Positives = 384/773 (49%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNPEIS + L+E+I  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E       IVVTEIPY V K +LIE IA+L+   ++  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEI-ESDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALV-AGRPRLLSLRECIKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  IL+ L+ A  NIDE++ IIR    P     +   RF 
Sbjct: 358 EHRHDVTIRRAQFDLKKAQERAHILEALIKACDNIDEVVHIIRASKTPSDAQRNLEKRFD 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
             E Q  AI+++RL  L  L   Q+  E + L+   + +  +LN+ ++    +  E++EV
Sbjct: 418 FDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERCKEVMKEELQEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE +        RRT              +     +P+ + IS+ G+I+           
Sbjct: 478 KEKYGD-----DRRTEIIPDEHE---FNAEDFYPNDPVVITISHLGYIKRTPLADFKEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       +E D  +    A     +L  +  G+ Y +   ++  G  + +  AIQ 
Sbjct: 530 RGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++ L+    +             +  +  ++  + +G                G   + +
Sbjct: 590 MLSLDPGDSVNAFLRIQGLDDDEFLDSHYVVFATKQGVVKKTSLRAYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISD 699
           +  +++  V    G + + +   N +   F    I  M R   GVR     + G   +  
Sbjct: 650 NDGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTMGRVSTGVRGMRLDEDGQDEVIG 709

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +I        T +  +   Y +        L  RGG G        ++GK ++
Sbjct: 710 MIVVNDPVNETVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNITDKTGKLVA 762



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 93/272 (34%), Gaps = 17/272 (6%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             + +  +           +  D        +   I   +           D        
Sbjct: 552 ATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQNMLSL------DPGDSVNAFLRI 605

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
             +   +       +   +   V  ++       +++   + A++  +GD +      + 
Sbjct: 606 QGLDDDEFLDSHYVVFATKQGVVKKTSLRAYSRPRTN--GVIAININDGDEVVDVRLTNG 663

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDS--TCKLLV 616
            + +++   +G+A      N+ +       ++ + +D +   +++   V +      ++V
Sbjct: 664 HNELIIADRNGRACRFDESNIRTMGRVSTGVRGMRLDEDGQDEVIGMIVVNDPVNETVMV 723

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLI 672
           VS +G     +  +     R GK    ++  +K   +  +  VT D  + ++ ++  ++ 
Sbjct: 724 VSEEGYGKRSQVEDYRLTNRGGKGVKTLNITDKTGKLVAIKNVTDDNDLMIINKSGIVIR 783

Query: 673 FSIDQIPEMSRG-KGVRLQSY-KDGGISDVIC 702
            S+ +   M R  +GVRL +  K   I   +C
Sbjct: 784 MSVAECRVMGRATQGVRLINLAKKNDIIASVC 815


>gi|170720560|ref|YP_001748248.1| DNA gyrase subunit A [Pseudomonas putida W619]
 gi|169758563|gb|ACA71879.1| DNA gyrase, A subunit [Pseudomonas putida W619]
          Length = 923

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/839 (30%), Positives = 416/839 (49%), Gaps = 110/839 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L + YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE+++++L+++I GPDFPT G I+  R+ I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPEVTVDELMQFIPGPDFPTAG-IINGRQGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  +E++ +  G   IVVTE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 243 RARSEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++ +++  + +++ F +N+  L     P+V+ L  +L+ ++ HRRE
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALID-GRPRVLNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P     +           
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAREALIATAWESSAV 421

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL+LRL  L  LE  ++ +E   
Sbjct: 422 QVMVERAGADSCRPEDLPEQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +L+S ++    I  E+  ++  +  +     RRT       A        
Sbjct: 482 ILEQIGELIRILSSAERLMEVIREELEAIRAEYGDA-----RRTEIL---NASHDLNYGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           MI +E   V IS+ G+         ++ +      SA   K+ D ++  L A++   +LL
Sbjct: 534 MIPEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD-------------- 609
            S+ GK Y      +        G  +  L+ L   + I      D              
Sbjct: 594 FSSKGKVYWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQSADPDEEL 653

Query: 610 --------------------------------STCKLLVVSSKGNAFIVEESEIIANTRK 637
                                           +   + + ++ G        +       
Sbjct: 654 EDGDEGVIEGEVVEAEEIDEEEGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSN 713

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   LK+   + +       G   V +  +  K++ F+   + EM R  +GVR      G
Sbjct: 714 GLIALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRTARGVRGMKLGKG 773

Query: 696 GISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +I   I E G   + ++ R + +           RGG G +      R+G  + +
Sbjct: 774 Q--QIISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGA 830



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +++ S  GK     A +++   G        + L   Q I++  + +S  ++L  S +G 
Sbjct: 738 VMMFSDAGKVIRF-AESVVREMGRTARGVRGMKLGKGQQIISMLIPESGAQILTASERGF 796

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK--LVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 S+     R   G   +       +    +    G+ + ++ +   L+   + ++
Sbjct: 797 GKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEV 856

Query: 679 PEMSR-GKGVRLQSYKDGG 696
             +SR  +GV L       
Sbjct: 857 SSLSRNTQGVTLIKLAADE 875


>gi|90419529|ref|ZP_01227439.1| DNA topoisomerase IV, A subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336466|gb|EAS50207.1| DNA topoisomerase IV, A subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 750

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/736 (60%), Positives = 571/736 (77%), Gaps = 1/736 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ + L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + LD G  +KK 
Sbjct: 13  DIEPIDLKAALEERYLAYALSTIMGRALPDVRDGLKPVHRRIVHAMRILRLDPGQGYKKC 72

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD+LVRL+Q F  RYPLI GQGNFGN+DGDS AA RYTEAR
Sbjct: 73  ARIVGDVMGKFHPHGDASIYDALVRLSQDFAIRYPLIDGQGNFGNVDGDSPAAMRYTEAR 132

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L+G+DEDAVDF+ TYNEE+ EP+V P  FPNLLANG+SGIAVGMATSIP HN
Sbjct: 133 MTDVATLLLRGIDEDAVDFKKTYNEEEEEPIVLPGAFPNLLANGSSGIAVGMATSIPPHN 192

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LI+NP+ + + LL ++ GPD PTGG+IV+++  I E+Y  GRG FRVRAR
Sbjct: 193 AAELCDAALKLIENPDATTDALLRFVQGPDLPTGGVIVDNQAQIREAYDTGRGSFRVRAR 252

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E+ GRG + +VVTEIPYQVQKSRLIEKIAEL++A+++PLL DIRDESAEDVRIV+ P
Sbjct: 253 WETEDQGRGGYVVVVTEIPYQVQKSRLIEKIAELLLARKLPLLGDIRDESAEDVRIVIEP 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++DP+LLMES+F L+D+E+R PLNMNVLS G+VP+VM L  +L EWLAH+R+VL RR
Sbjct: 313 KSRTVDPELLMESLFRLTDLESRIPLNMNVLSGGKVPRVMSLKDVLAEWLAHQRDVLVRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S FR+  I+RR+EIL G LIA+LN+DE+I IIR ED+PK  ++  F LT+ Q +AILN+R
Sbjct: 373 SRFRLAQIERRLEILSGYLIAFLNLDEVIRIIREEDEPKTELMRTFELTDTQAEAILNMR 432

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE+++K E D L  EK + ++LL S ++QW  IA E+REV+E +SK T +GRR
Sbjct: 433 LRSLRKLEEFELKREFDTLTGEKAEKEALLASDERQWAGIAAEVREVRETYSKKTKIGRR 492

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +        +  A+IEKEPITVV+S +G++R +K H  D S+L F+EGD L++A 
Sbjct: 493 RTMFADAPNRALDDITVALIEKEPITVVLSKKGFLRGMKGHLADFSSLAFREGDGLQLAF 552

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA TTD++L LST G+A+T  A  L  GRG GE I+L  +L  +QDI  AFV D   + L
Sbjct: 553 HAMTTDKLLFLSTGGRAFTHGADKLPGGRGQGEPIRLAFELEDDQDIALAFVADPERRRL 612

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS 674
           +VSS GN F+  E++++ANTRKGK  + V+ + K+ L   V  GDHVA+VGENRKLL+F 
Sbjct: 613 LVSSDGNGFVASEADMLANTRKGKQLMNVAGKTKLALAAPVGAGDHVAIVGENRKLLVFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + Q+P+M+RGKGVRLQ YKDGG+SD   F + +GLTW DSAGRS+ RSE +LL W G R 
Sbjct: 673 LVQVPQMTRGKGVRLQRYKDGGLSDARVFAMADGLTWTDSAGRSFTRSETELLEWRGDRA 732

Query: 735 GVGSLVPKGFPRSGKF 750
             G LVPKGFP++ +F
Sbjct: 733 QAGRLVPKGFPKTNRF 748


>gi|220930840|ref|YP_002507749.1| DNA gyrase subunit alpha [Clostridium cellulolyticum H10]
 gi|220001168|gb|ACL77769.1| DNA gyrase, A subunit [Clostridium cellulolyticum H10]
          Length = 840

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/760 (29%), Positives = 389/760 (51%), Gaps = 19/760 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ + E+ +  + +   +++ ++ YA+S I +RA+PD+RDG KPVHRRI++ M   G   
Sbjct: 2   ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KS   VGE +   HPHGD +VYDSLVR+AQ F  R+PL+ G GNFG+ DGDSAAA
Sbjct: 62  EKPYRKSVATVGEALKSYHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+ +++  +L  +++D VDF+  ++E + EPVV PS+FPNLL NG+SGIAVGMA
Sbjct: 122 MRYTEARLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPSRFPNLLVNGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E  +   A++DNPEI+I++L++YI GPDFPT   I+  +  I E+++ GRG
Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELMKYIKGPDFPTAAKII-GKRGIREAFKTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VR+   +EE+      I++TEIPY V K+RL+EKIA+L+  KRI  +  I+DES  +
Sbjct: 241 KLVVRSEAVIEEMHGNRHRIIITEIPYLVNKARLVEKIAQLVKDKRIDGISFIQDESGRE 300

Query: 309 V-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLDGILKE 363
               ++    R  +P++++  ++  + ++  F +NM  +         P+V+ L  I+  
Sbjct: 301 EPVRIVIDLKRDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRVLNLRQIIDY 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           ++AH+ +V+ RR+ F +   + R  IL+GL  A  ++DE+I  IRN       K  +  R
Sbjct: 361 YIAHQEDVIRRRTKFELDKAEARAHILEGLKKALDHLDEVIKTIRNSKTEAIAKENLSER 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F  ++ Q  AI+++RL  L  LE  ++++E + LL + +    +L +       I  E+ 
Sbjct: 421 FGFSDKQAQAIVDMRLGRLTGLEREKLETEYNELLEKIKYYKDVLANEILVHQIIKDELS 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
            +K  ++                       +  +       +        +S +     +
Sbjct: 481 VIKNKYADERRTKIEIDEDEIDIEDLIQEEESVITMTHFGYIKRLPADTYKSQRRGGKGI 540

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
             L  +E D +K      T   I+  +  G+ Y L A  +       +  AI  L+ L+ 
Sbjct: 541 IGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYRLKAYEIPESGRQAKGTAIVNLLQLDG 600

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ + T      Y     L++ +  G     +  E     + G   + +   +++  V  
Sbjct: 601 DEKVTTVIPIQEYKEGLYLIMATKNGLVKKTDLMEYDNIRKGGLAAVSLRENDQLIDVQL 660

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWI 712
             G+  + +   N   + F       + R  +GV+     +G    VI  ++  +  T +
Sbjct: 661 TDGNQDIILSTVNGMAIRFRETDARPIGRVSQGVKGIELDEGD--FVIGMEVCTDNTTLL 718

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +        +  RGG G L  +   ++GK + 
Sbjct: 719 VVTENGFGKRTELDEYKVQTRGGKGVLTYRITEKTGKSIG 758



 Score = 81.4 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 6/182 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
               +         L+A+  +E D L           I+L + +G A      +      
Sbjct: 630 KTDLMEYDNIRKGGLAAVSLRENDQLIDVQLTDGNQDIILSTVNGMAIRFRETDARPIGR 689

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV- 644
             + +   I+L+    ++   V      LLVV+  G     E  E    TR GK  L   
Sbjct: 690 VSQGV-KGIELDEGDFVIGMEVCTDNTTLLVVTENGFGKRTELDEYKVQTRGGKGVLTYR 748

Query: 645 ---SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDV 700
               + + + +++    D + ++  +  ++   + +I  + R  +GV L    +G     
Sbjct: 749 ITEKTGKSIGMLLVSEEDDIMLISSDGSIIRMKVSEISILGRATQGVTLMRMSEGNNVVS 808

Query: 701 IC 702
           + 
Sbjct: 809 VA 810


>gi|148256016|ref|YP_001240601.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. BTAi1]
 gi|146408189|gb|ABQ36695.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. BTAi1]
          Length = 750

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/735 (54%), Positives = 540/735 (73%), Gaps = 1/735 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKKS
Sbjct: 12  EIHEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEAR
Sbjct: 72  AKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNIDGDNAAAYRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L+G+DED V+FR  Y+ +  EPVV P  FPNLLANG  GIAVGMATSIP HN
Sbjct: 132 MTDVARLLLEGIDEDGVEFRPNYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATSIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LI+ P+     LL ++ GPDFPTGG +++S+ESI+E+Y  GRG FRVRA+
Sbjct: 192 AAELCDAALHLIEKPDAKSRALLRWVKGPDFPTGGTVIDSKESIIEAYTTGRGSFRVRAK 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE  RG+W +V+TEIPY VQKSRL+EKIAEL+  K++PL+ D+RDESAEDVR+V+ P
Sbjct: 252 WKQEEGNRGTWIVVITEIPYLVQKSRLVEKIAELLNEKKLPLVGDVRDESAEDVRLVIEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K++++DP L+MES+F L+D+E++ PLN+NVL  G++P+V+ L   L+EWL H R+VL RR
Sbjct: 312 KSKNVDPALMMESLFRLTDLESKIPLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S++R + I+ R+EIL G LIAYLNIDE+I IIR ED+PKPV++  F LTE Q +AILN+R
Sbjct: 372 SNYRKKQIENRLEILGGYLIAYLNIDEVIRIIRTEDEPKPVLMKTFKLTEVQAEAILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE +I++E  NL  E + I+ LL S + QW ++  +++ V+++F   T LGRR
Sbjct: 432 LRSLRKLEEMEIRTEDKNLRGELKGINELLASEQVQWAKVGEQVKTVRDLFGPKTPLGRR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +    D A +++A IE+EP+TVV+S +GW+R+LK H  DLS L FK  D L  A 
Sbjct: 492 RTNFADAPEHDLAAIEEAFIEREPVTVVVSEKGWVRTLKGHVADLSNLQFKTDDQLGQAF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A  T ++LL +++GK Y+L  G L  GRGHGE I++ IDL+ +  IV+ FV     K L
Sbjct: 552 FAENTSKVLLFASNGKFYSLDVGKLPGGRGHGEPIRMFIDLDQDASIVSMFVSKGERKFL 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           + +S G  F+V+E + ++NTRKGK  L V++  + + +  V GD VAV+G N K+++F +
Sbjct: 612 IAASDGQGFVVKEEDCVSNTRKGKQVLNVTAPAEARAITTVQGDQVAVIGTNHKMVVFGL 671

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           DQ+PEM+RG+GVRLQ Y    +SDV  F+  +GL W DSAGR    S  +L  + G R  
Sbjct: 672 DQVPEMARGRGVRLQKYTSAQLSDVTTFEQKQGLAWKDSAGRDQGLSWKELADYRGNRAD 731

Query: 736 VGSLVPKGFPRSGKF 750
            G +  +G P+S KF
Sbjct: 732 AGRIA-QGLPKSNKF 745


>gi|289623731|ref|ZP_06456685.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648173|ref|ZP_06479516.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488015|ref|ZP_07006052.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298157294|gb|EFH98377.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330866098|gb|EGH00807.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 928

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/834 (30%), Positives = 412/834 (49%), Gaps = 104/834 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE+++++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++  E   
Sbjct: 422 VEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +LNS  +    I  E+  ++  +  +     RRT   +   A        
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELEVIRSEYGDA-----RRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +L+
Sbjct: 534 LITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLM 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----------- 612
            S+ GK Y L    +        G  +  L+ L+  + I T    D              
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEA 653

Query: 613 -------------------------------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                                           + + ++ G                G   
Sbjct: 654 LEGELDDAENSSETEEERKVRIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIA 713

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           L++   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    
Sbjct: 714 LELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLI 773

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLI-PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++L  S +
Sbjct: 732 QEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMR-LPEGQKLISMLIPEEGSQILTASER 790

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L+   + 
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVG 850

Query: 677 QIPEMSR-GKGVRLQSYKDGG 696
           ++  + R  +GV L       
Sbjct: 851 EVSSLGRNTQGVTLIKLASDE 871


>gi|73916202|gb|AAZ92969.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQT 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 VITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|118587498|ref|ZP_01544923.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163]
 gi|71466854|emb|CAH41001.1| DNA gyrase subunit A [Oenococcus oeni]
 gi|118432148|gb|EAV38889.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163]
          Length = 866

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/765 (30%), Positives = 390/765 (50%), Gaps = 18/765 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +   N+N   +  +K   L   +   +L+YA+S I  RA+PD+RDG KPVHRRI+  
Sbjct: 1   MADE--ENNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFG 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+      KKSARIVG+V+GK HPHGD ++Y+SLVR+AQPF  RYPL+ G GNFG+
Sbjct: 59  MNELGVTPDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEAR++++A  +L+ +++  VDF+ +Y+ ++ EPVV PS+FPNLL NG 
Sbjct: 119 VDGDPAAAMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGA 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP+HN++E+  A   L+ NP+ ++  L+E + GPDFPTG  IV  +  I 
Sbjct: 179 QGIAVGMATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGA-IVMGKSGIR 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   VR++  +E    G   I V+E+PY V K++LIE+I EL++ K++  +  
Sbjct: 238 RAYETGRGSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITA 297

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES ++   +     R  + ++++ +++  + ++T F  NM  ++    P+ M L  I
Sbjct: 298 IRDESDQNGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINH-GKPETMSLKQI 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L  +L H+RE++ RR+ F ++    R  IL+GL IA  +ID II +IR+ +     K  +
Sbjct: 357 LVAYLEHQREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNEL 416

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++R+ L++ Q  AIL++RL  L  LE  +I++E  +LL   E    +L   ++    I  
Sbjct: 417 INRYQLSDKQAQAILDMRLVRLTGLERGKIEAEYTDLLKSIEDFKDILAKPERIDQIIYQ 476

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSH 536
           E+ ++   F        +      +   D    ++ +I       +   +     +    
Sbjct: 477 ELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVLISLTHKGYIKRLSTSEFHTQNRG 536

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  ++  + D ++  +   T D +L  S  GK Y +    +       +   +  L+
Sbjct: 537 GRGVQGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAKGIPVINLL 596

Query: 595 DLNHNQDIVTAFVYDST-----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            L+  + +                L   +  G       SE     + G   + +  ++ 
Sbjct: 597 GLDAGERVQAVINVRGDAATSKDFLFFTTKLGTVKRTAVSEFTNIRQSGLRAINLRDDDS 656

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +   +   + F+   +  M R   GVR  + +D          I  
Sbjct: 657 LISVLLTNGKQNIVIASHSGYAVSFAESDVRAMGRTASGVRGMNLRDKDYVVGADLLIP- 715

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           G   +    + Y +        +  RGG G        ++G    
Sbjct: 716 GDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKNGPLAG 760



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 80/232 (34%), Gaps = 8/232 (3%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           D G R      V      +        +  TV  +      +++     L A++ ++ DS
Sbjct: 599 DAGERVQAVINVRGDAATSKDFLFFTTKLGTVKRTAVSEFTNIR--QSGLRAINLRDDDS 656

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L   L  +    I++ S  G A +  A + +   G   +    ++L     +V A +   
Sbjct: 657 LISVLLTNGKQNIVIASHSGYAVSF-AESDVRAMGRTASGVRGMNLRDKDYVVGADLLIP 715

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGE 666
              +L+++ KG        E     R GK +    +   +     L V    + + +  +
Sbjct: 716 GDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKNGPLAGLAVVSGDEDIMITTD 775

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           +  ++ F+   +    R   GV +   ++G     +     E    I +  +
Sbjct: 776 SGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEKEEDEEIPATDQ 827


>gi|300777850|ref|ZP_07087708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium
           gleum ATCC 35910]
 gi|300503360|gb|EFK34500.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium
           gleum ATCC 35910]
          Length = 865

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/757 (29%), Positives = 387/757 (51%), Gaps = 22/757 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  +G+     + K
Sbjct: 6   ERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNRKYLK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVYD++VR+AQ +  RYP + GQGNFG++DGD  AA RYTEA
Sbjct: 66  SARIVGDVLGKYHPHGDSSVYDAMVRMAQDWSLRYPQVDGQGNFGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++++ +L  +D++ VDF++ +++   EP V P+K PNLL NGTSGIAVGMAT++  H
Sbjct: 126 RLKKISDEVLSDLDKETVDFQNNFDDSLQEPTVMPTKIPNLLVNGTSGIAVGMATNMAPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A  A IDN EI+I++L+++II PDFPTGG I+   + + +++  GRG   +RA
Sbjct: 186 NLSESVDAICAYIDNKEITIDELMQHIIAPDFPTGG-IIYGYDGVRDAFHTGRGRVVLRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   +E+G     I+VTEIPYQV K+ +I + AEL+  ++IP + +IRDES      +++
Sbjct: 245 KVNFDEIG-NRNAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIHEIRDESDRKGLRIVY 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                  P++++  ++  + ++T F +N   L     P+ + L  I+  ++ HR EV+ R
Sbjct: 304 ELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVH-GRPEQLNLKDIIHHFVEHRHEVIVR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAY------LNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ F ++    R  IL+G +              II    N    K  ++  F L++ Q 
Sbjct: 363 RTQFELKKAKERAHILEGFMKVIGTQDALDRAISIIRHSANPQAAKEGLIEAFELSDIQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+LRL  L  +E  +I+ E D ++ E   ++ +L +  +++  I  E+ E+KE +  
Sbjct: 423 QAILDLRLARLTGMELDKIRDEYDAIMKEIANLEDILANEPRRFQIIKEELLEIKEKYGD 482

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   +                +       +  ++    +      V   A   ++ 
Sbjct: 483 ERRTEIDYSGGEMSIEDIIPNESVVLTISHAGYIKRTSLSEYKIQSRGGVGNKAATTRDS 542

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D L+  + A     +L  +  G+ Y L    +  G    +  A+Q LI++  +  I    
Sbjct: 543 DFLEYIVSATNHQYMLFFTEKGRCYWLRVFEIPEGSKTAKGRAVQNLINIEPDDKIKAYI 602

Query: 607 ---VYDSTCK-----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                  +       +++V+  G                G   +++   +++       G
Sbjct: 603 RTNNLKDSEYVNQMSVVMVTKNGTIKKTSLEAYSRPRVNGVNAIEIRDNDQLLGAYLTNG 662

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI-SDVICFKICEGLTWIDSA 715
           +  + +  +N K + F  +++ E+ RG  GVR    +DG     +I     E  T +  +
Sbjct: 663 NSQIMIATKNGKCIRFPEEKVREVGRGSIGVRGILLEDGDEAIGMIVVNDVENETVLVVS 722

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG G +      ++G  ++
Sbjct: 723 EKGYGKRTAVEDYRITNRGGKGVITLNITEKTGNLIA 759



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 79/205 (38%), Gaps = 8/205 (3%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
            ++       ++  +  T+  ++       + + V+   +   +   L  A   +   +I
Sbjct: 609 DSEYVNQMSVVMVTKNGTIKKTSLEAYSRPRVNGVNAIEIRDNDQ--LLGAYLTNGNSQI 666

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGN 622
           ++ + +GK    P   +         ++ ++  + ++ I    V D     +LVVS KG 
Sbjct: 667 MIATKNGKCIRFPEEKVREVGRGSIGVRGILLEDGDEAIGMIVVNDVENETVLVVSEKGY 726

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
                  +     R GK  + ++  EK   +  +  VT +  + ++ ++   +   +D++
Sbjct: 727 GKRTAVEDYRITNRGGKGVITLNITEKTGNLIAIQNVTDEDGLMIINKSGVAIRMGMDEM 786

Query: 679 PEMSR-GKGVRLQSYKDGGISDVIC 702
             M R  +GV+L + K       I 
Sbjct: 787 RVMGRNTQGVKLINLKKNDEIAAIA 811



 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 2/103 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             + +L++S  G        +       G+ +  L       +++          L++++
Sbjct: 714 ENETVLVVSEKGYGKRTAVEDYRITNRGGKGVITLNITEKTGNLIAIQNVTDEDGLMIIN 773

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
             G A  +   E+    R   G   + +   +++  + KV  D
Sbjct: 774 KSGVAIRMGMDEMRVMGRNTQGVKLINLKKNDEIAAIAKVEMD 816


>gi|160893406|ref|ZP_02074191.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50]
 gi|156864801|gb|EDO58232.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50]
          Length = 849

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/760 (30%), Positives = 388/760 (51%), Gaps = 18/760 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +  + + +  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+H+M E+    
Sbjct: 2   DDDKIFDKISEVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               +K ARIVG+ +GK HPHGD S+YD+LV+LAQ +  RYPL+ G GNFG+ DGD AAA
Sbjct: 62  DKPHRKCARIVGDTMGKYHPHGDSSIYDALVKLAQDWNTRYPLVDGHGNFGSEDGDGAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+++++  +L  +++D VDF   ++E + EP V PS+FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARLSKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           T+IP HN++E+  A + +IDN      E SI+++++ I GPDFP G  I+     I E+Y
Sbjct: 182 TNIPPHNLKEVIGATVKIIDNRIEEDRETSIDEIMQIIKGPDFPMGAEIL-GHRGIKEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG  +VRA   +E +  G   IVVTE+PY V K+ LI+KI EL+  KR+  + D+RD
Sbjct: 241 RTGRGKIKVRAVTDIEAMPNGKHKIVVTELPYMVNKALLIQKIVELVKTKRVEGITDVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES+ +   V+    +  + ++L+  ++  + ++  F +NM  L    VP+++ +  +L  
Sbjct: 301 ESSREGIRVVIELKKDTNANVLLNQLYKHTQLQDTFGVNMLALVD-GVPKILNISQMLGY 359

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           +L H+ +V+ RR+ + +   + R  ILKGLLIA  NIDE+I IIR+       K  ++ R
Sbjct: 360 YLKHQEDVVTRRTKYDLNKAEERAHILKGLLIALDNIDEVINIIRSSKSVQDAKNSLIER 419

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F LTE Q  AI+++RLR+L  LE  ++++E   L+ +   + ++L   K+    I  E+ 
Sbjct: 420 FGLTEIQAQAIVDMRLRALTGLEREKLEAEYKELMDKISYLKAILADEKKLLGVIKDELL 479

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
            + + +         R                 +   +   +        ++       +
Sbjct: 480 VISQKYGDERRTALGRDVDEVTDEELIERENIVITMTKLGYIKRMPEDIFKAQNRGGKGI 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNH 598
             +   + D ++  +   T + ++  +  G+ Y L    +        G AI  L+ L  
Sbjct: 540 RGMQTIDEDYIESMIVTTTHNYLMFFTNTGRVYRLKGYEIPEAGRTARGVAIVNLLQLQA 599

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + I        Y+    L + +  G     + SE     + G T + +   +++  V  
Sbjct: 600 GEKITAVIPLKSYEDGKYLFMATRNGMVKKTDISEYQNVRKTGLTAIVLRDNDELIEVKA 659

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
             G D + ++ +    + F+   + +  R   GV+        I   +     +G   + 
Sbjct: 660 TNGEDDIFLITKKGMTIRFNEKNVRQTGRTSMGVKGIHLGKDDIVISMQMS-SQGEKILL 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  +        +  RGG G    K   ++G  + +
Sbjct: 719 VTENGMGKRTLISEFNVQNRGGKGVKCYKITDKTGDLVGA 758



 Score = 81.4 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 61/191 (31%), Gaps = 6/191 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                         L+A+  ++ D L      +  D I L++  G        N+     
Sbjct: 629 KTDISEYQNVRKTGLTAIVLRDNDELIEVKATNGEDDIFLITKKGMTIRFNEKNVRQTGR 688

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
               +   I L  +  +++  +     K+L+V+  G       SE     R GK      
Sbjct: 689 TSMGV-KGIHLGKDDIVISMQMSSQGEKILLVTENGMGKRTLISEFNVQNRGGKGVKCYK 747

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           +   + + +   +    + + ++     ++  S + I  + R   GV++ +        V
Sbjct: 748 ITDKTGDLVGAKIVTDENDIMIITTEGIIIRTSCEGISTLGRVTSGVKVINLNYDNNVKV 807

Query: 701 ICFKICEGLTW 711
                 +   +
Sbjct: 808 ASMTEVQKEEF 818


>gi|25011002|ref|NP_735397.1| DNA gyrase subunit A [Streptococcus agalactiae NEM316]
 gi|77413228|ref|ZP_00789425.1| DNA gyrase, A subunit [Streptococcus agalactiae 515]
 gi|23095402|emb|CAD46607.1| DNA gyrase A subunit [Streptococcus agalactiae NEM316]
 gi|77160688|gb|EAO71802.1| DNA gyrase, A subunit [Streptococcus agalactiae 515]
          Length = 819

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/755 (31%), Positives = 395/755 (52%), Gaps = 21/755 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGA-LVMGRSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +    VP+++ L  I+  ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEK-GVPKILSLRQIIDNYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLL+A  ++DE+I IIRN +     +  ++SRF L+E Q 
Sbjct: 359 IVRRTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSRFELSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
           +    R      EV   +   L +             +    +   R+ K     +    
Sbjct: 479 A---RRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTG 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
               D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L+  + I
Sbjct: 536 VNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETI 595

Query: 603 VTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
            T         +       + +G       SE     + G   + +   +++  V+ +  
Sbjct: 596 QTIINARKEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDE 655

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            + V +       + F ++ +  M R   GVR  + ++G    V   +I  G   +    
Sbjct: 656 NEDVIIGTRTGYSVRFKVNAVRNMGRTATGVRGVNLREGDKV-VGASRIVNGQEVLIITE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + Y +           RGG G        ++G   
Sbjct: 715 KGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLA 749



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 66/190 (34%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               L A++ KE D L   L     + +++ +  G +       + +
Sbjct: 619 IVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRN 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                  ++  ++L     +V A    +  ++L+++ KG     E SE     R GK   
Sbjct: 679 MGRTATGVRG-VNLREGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIK 737

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +    +LV     + + V+ +   ++  ++  I +  R   GV++        
Sbjct: 738 TANITAKNGPLARLVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAK 797

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 798 IVTVALVEQE 807


>gi|259500772|ref|ZP_05743674.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           DSM 13335]
 gi|302190777|ref|ZP_07267031.1| DNA gyrase, A subunit [Lactobacillus iners AB-1]
 gi|259167466|gb|EEW51961.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           DSM 13335]
          Length = 815

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/765 (29%), Positives = 400/765 (52%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQN--QDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+ +L+  I GPDFPTGG I+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGG-IIMGRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +     P V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVD-GSPHVLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR           +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISD--SEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 LHF--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                      +  D +   ++ +T D +L  +  GK Y+  +  +       +   I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   +++         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGENVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTTNVTEKNGPLVG 753



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-M 650
           I L  N  +V + + D   ++LV+S KG       SE    +R   G     V+ +   +
Sbjct: 692 IKLRANDYVVGSSIVDDNSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTTNVTEKNGPL 751

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKICE 707
             V  V G + + ++ +   ++   +D + +  R   GVRL     G  ++ +   K  +
Sbjct: 752 VGVTVVDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811

Query: 708 GLTW 711
               
Sbjct: 812 NSEI 815


>gi|66046876|ref|YP_236717.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae B728a]
 gi|63257583|gb|AAY38679.1| DNA gyrase, subunit A [Pseudomonas syringae pv. syringae B728a]
 gi|330897204|gb|EGH28623.1| DNA gyrase subunit A [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 925

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/834 (30%), Positives = 412/834 (49%), Gaps = 104/834 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE+++++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++  E   
Sbjct: 422 VEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +LNS  +    I  E+  ++  +  +     RRT   +   A        
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +L+
Sbjct: 534 LITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLM 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----------- 612
            S+ GK Y L    +        G  +  L+ L+  + I T    D              
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEA 653

Query: 613 -------------------------------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                                           + + ++ G                G   
Sbjct: 654 LEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIA 713

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           L++   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    
Sbjct: 714 LELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLI 773

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLI-PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++L  S +
Sbjct: 732 QEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMR-LPEGQKLISMLIPEEGSQILTASER 790

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L+   + 
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVG 850

Query: 677 QIPEMSR-GKGVRLQSYKDGG 696
           ++  + R  +GV L       
Sbjct: 851 EVSSLGRNTQGVTLIKLASDE 871


>gi|262039493|ref|ZP_06012795.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264]
 gi|261746474|gb|EEY34011.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264]
          Length = 853

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/773 (33%), Positives = 409/773 (52%), Gaps = 26/773 (3%)

Query: 3   VDNISNSNTLVEENVKAVS--------LRFALEERYLAYALSTIKERAIPDLRDGFKPVH 54
            +   + + +V E +K  +        +   ++  YL Y++S I  RA+PD+RDG KPVH
Sbjct: 17  EETNDDDSDIVVEEIKETNMTNEVNIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVH 76

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI+ AM+EMG+     FKKSARIVGEV+GK HPHGD SVY+++VRLAQ F  RY L+ G
Sbjct: 77  RRILFAMNEMGMTHDKPFKKSARIVGEVLGKYHPHGDSSVYNAMVRLAQDFNMRYLLVDG 136

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            GNFG++DGD AAA RYTEARM ++   +L  +D++ +DFR  ++E   EP V P+K PN
Sbjct: 137 HGNFGSVDGDEAAAMRYTEARMAKITAELLADIDKNTIDFRKNFDESLDEPTVLPAKLPN 196

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
           LL NG++GIAVGMAT+IP HN+ EIC+  +ALIDN EIS+++L+ YI GPDFPTGG I+ 
Sbjct: 197 LLLNGSTGIAVGMATNIPPHNLSEICDGIVALIDNREISVDELINYIKGPDFPTGG-IIN 255

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            ++ I E+YR GRG  +V  +  +E    G   I+VTE+PYQV K+RLIEKIAEL+  K+
Sbjct: 256 GKQGIYEAYRTGRGKIKVAGKVKIETSKTGKESIIVTELPYQVNKARLIEKIAELVRHKK 315

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           +  + D+RDES  +   ++    +  + +L++ S++  +D++  F + M  L     P+V
Sbjct: 316 LTGISDLRDESDREGIRIVIELKKGEESELILNSLYKFTDLQNTFGIIMLALV-NNAPRV 374

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           + L  IL+ +L HR  V+ RR  F +   + R  IL+G  IA  NIDE+I IIR      
Sbjct: 375 LNLKQILENYLEHRYNVITRRVQFELNKAENRAHILEGFKIALDNIDEVIRIIRGSKDAN 434

Query: 415 PVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                    F  +E Q  AIL++RL+ L  LE  +I+ E   L+   E++ S+L    ++
Sbjct: 435 EAREKLIASFGFSEIQAKAILDMRLQRLTGLERDKIEQEYRELMLLIEELRSILADDSKK 494

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           +  I  E+ ++KE F        +                  +   E   V  ++     
Sbjct: 495 YRIIKDEVIKLKEDFGDKRRTEIKEARVEIGIEDLIKDEDVVVTLTEKGYVKRTSIDTYH 554

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEA 589
           S +   + ++A +  E D +K    A   D +L+ +T GK +++    +     +  G+ 
Sbjct: 555 SQRRGGIGVNATNTVEDDVIKDMYIAKNLDTLLIFTTKGKVFSMKVYEIPEAGKQARGKL 614

Query: 590 IQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  LI L+ ++ + T      ++    +  ++  G     + +      + G   L +  
Sbjct: 615 ISNLIKLSEDERVSTVIRVREFEKDKAIFFITKDGVVKKTDLTLFANINKTGIRALTLRD 674

Query: 647 EEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           E+++K     +G   D + +   N   + F  + +  M R   GV+  + +D        
Sbjct: 675 EDELKFAGLTSGSEKDEIFIATRNGISIRFCEEDVRVMGRTAAGVKGITLRDKDYVVAAV 734

Query: 703 F----KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                KI E L+ +      Y +        +  RGG G +  K   ++GK +
Sbjct: 735 IINPEKISEELSVMTITEEGYGKRTALSEYKVQSRGGKGIINLKINEKTGKIV 787



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 12/202 (5%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            +   V  ++     ++    +    L  ++             D I + + +G +    
Sbjct: 646 TKDGVVKKTDLTLFANINKTGIRALTLRDEDELKFAGLTSGSEKDEIFIATRNGISIRF- 704

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEI 631
               +   G   A    I L     +V A + +         ++ ++ +G       SE 
Sbjct: 705 CEEDVRVMGRTAAGVKGITLRDKDYVVAAVIINPEKISEELSVMTITEEGYGKRTALSEY 764

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
              +R GK  + +   EK   +  V  V     + ++     L+   +D +  + R   G
Sbjct: 765 KVQSRGGKGIINLKINEKTGKIVDVKIVDDKTEIMLITSEGTLIRTKVDTVSVIGRATSG 824

Query: 687 VRLQSYKDGGISDVICFKICEG 708
           VR+   ++         KI E 
Sbjct: 825 VRIMKVRNEEKV-ASAVKIAEN 845


>gi|330972345|gb|EGH72411.1| DNA gyrase subunit A [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 925

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/834 (30%), Positives = 412/834 (49%), Gaps = 104/834 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE+++++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++  E   
Sbjct: 422 VEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +LNS  +    I  E+  ++  +  +     RRT   +   A        
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +L+
Sbjct: 534 LITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLM 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----------- 612
            S+ GK Y L    +        G  +  L+ L+  + I T    D              
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEA 653

Query: 613 -------------------------------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                                           + + ++ G                G   
Sbjct: 654 LEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIA 713

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           L++   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    
Sbjct: 714 LELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLI 773

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLI-PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++L  S +
Sbjct: 732 QEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMR-LPEGQKLISMLIPEEGSQILTASER 790

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L+   + 
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVG 850

Query: 677 QIPEMSR-GKGVRLQSYKDGG 696
           ++  + R  +GV L       
Sbjct: 851 EVSSLGRNTQGVTLIKLASDE 871


>gi|319744965|gb|EFV97294.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           agalactiae ATCC 13813]
          Length = 819

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/752 (31%), Positives = 394/752 (52%), Gaps = 15/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGA-LVMGRSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +    VP+++ L  I+  ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEK-GVPKILSLRQIIDNYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLL+A  ++DE+I IIRN +     +  ++SRF L+E Q 
Sbjct: 359 IVRRTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSRFELSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
           +            +   D    +  +I       +    +   R+ K     +       
Sbjct: 479 ARRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNN 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L+  + I T 
Sbjct: 539 DDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTI 598

Query: 606 FVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH 660
                   +       + +G       SE     + G   + +   +++  V+ +   + 
Sbjct: 599 INARKEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENED 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +       + F ++ +  M R   GVR  + ++G    V   +I  G   +    + Y
Sbjct: 659 VIIGTRTGYSVRFKVNAVRNMGRTATGVRGVNLREGDKV-VGASRIVNGQEVLIITEKGY 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +           RGG G        ++G   
Sbjct: 718 GKRTEASEYPTKGRGGKGIKTANITAKNGPLA 749



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 66/190 (34%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               L A++ KE D L   L     + +++ +  G +       + +
Sbjct: 619 IVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRN 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                  ++  ++L     +V A    +  ++L+++ KG     E SE     R GK   
Sbjct: 679 MGRTATGVRG-VNLREGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIK 737

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +    +LV     + + V+ +   ++  ++  I +  R   GV++        
Sbjct: 738 TANITAKNGPLARLVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAK 797

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 798 IVTVALVEQE 807


>gi|72160413|ref|YP_288070.1| DNA gyrase subunit A [Thermobifida fusca YX]
 gi|71914145|gb|AAZ54047.1| DNA gyrase subunit A [Thermobifida fusca YX]
          Length = 848

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/778 (31%), Positives = 399/778 (51%), Gaps = 37/778 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           V+    +       ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVH+R+++AM 
Sbjct: 4   VNTTPEAPDNTGGRIEPVDLQVEMQRSYLDYAMSVIIGRALPDVRDGLKPVHQRVLYAMY 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G      + K AR+VG+V+G  HPHGD ++Y++LVRLAQP+  R PL+ G GNFG+  
Sbjct: 64  DSGYRPDRGYFKCARVVGDVMGNYHPHGDSAIYETLVRLAQPWAMRMPLVDGNGNFGSPG 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE ++  +A  +L+ +D++ VDFR  Y+    EPVV P++FPNLL NG+SG
Sbjct: 124 NDPAAAMRYTECKLAPLAMEMLRDIDKETVDFRPNYDGRSQEPVVLPARFPNLLVNGSSG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ E     +D+P+ S E+    L+E I GPDFPT G IV  R  
Sbjct: 184 IAVGMATNIPPHNLREVAEGVYWYLDHPDASDEELLDALIERIKGPDFPTRGRIV-GRRG 242

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I E+YR GRG   +RA   +EE  RG  C+VVTE+PYQV    L  KIAEL+   +I  +
Sbjct: 243 IEETYRTGRGSITMRAVVEIEEDKRGRQCLVVTELPYQVNPDNLALKIAELVKEGKISGI 302

Query: 299 EDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            D++DES+    + ++    R     +++ +++  + ++  F  NM  L    VP+ + L
Sbjct: 303 ADVKDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVD-GVPRTLRL 361

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +++ W+AH+ EV+ RR+ + ++  + R  IL+ LL A   IDE+IA+IR     D  K
Sbjct: 362 DQMIRHWVAHQIEVIVRRTRYLLRKAEERAHILRALLKAIDRIDEVIALIRGSASADDAK 421

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++   ++ + Q  AIL+++LR L  LE  Q+ SE D L+A+    + +L S ++Q   
Sbjct: 422 NGLMELLAIDDVQARAILDMQLRKLAALERQQLTSEYDELMAQIADYNEILESPERQRRI 481

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           I  E+ E+ E +        RRT         +    +  I +E I V I+  G+ +   
Sbjct: 482 IRDELAEIVEKYGD-----DRRTEIVPYEGDMR---MEDFIAEEDIVVTITRGGYAKRTR 533

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
                  K     +     K+ D ++      T   IL  +  G+ Y   A  L      
Sbjct: 534 LDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHHWILFFTNKGRVYRTKAYELPELARD 593

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G  +  L+    +++I        YD+   L++ +  G     + +E  +    G   
Sbjct: 594 SRGHHVANLVPFLPDEEIAQVLALRDYDAAPYLVLATRSGLVKKTKLAEFDSARSSGIIA 653

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGG- 696
           + +  ++++     V   D + ++  N + + F      +  M R   GV    + +G  
Sbjct: 654 INLREDDELIAARLVYPTDDLLLISSNAQAIRFPASDDSLRPMGRATSGVIGMRFAEGDY 713

Query: 697 ISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +   +  EG T  + +    Y +        + KRGG G L  +     GK + +
Sbjct: 714 LLSMDVIREGEGATDVLVATEGGYAKRTPADQYPVQKRGGKGVLTARIVESRGKLVGA 771



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 11/187 (5%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                    + S  + A++ +E D L  A   + TD +LL+S++ +A   PA +    R 
Sbjct: 637 KTKLAEFDSARSSGIIAINLREDDELIAARLVYPTDDLLLISSNAQAIRFPASDDSL-RP 695

Query: 586 HGEAIQLLIDLNHNQ-----DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
            G A   +I +   +      +      +    +LV +  G A      +     R GK 
Sbjct: 696 MGRATSGVIGMRFAEGDYLLSMDVIREGEGATDVLVATEGGYAKRTPADQYPVQKRGGKG 755

Query: 641 FLK---VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
            L    V S  K+   + V   D +  +  N  ++     +I +  R   GVRL     G
Sbjct: 756 VLTARIVESRGKLVGALMVDPEDEILAITSNGGVIRTKCAEIKQSQRATMGVRLMHLSKG 815

Query: 696 GISDVIC 702
                I 
Sbjct: 816 NHVVAIA 822



 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 5/136 (3%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +    S  + +         S+ +         +L+ +  G A   PA      +  G+ 
Sbjct: 696 MGRATSGVIGMRFAEGDYLLSMDVIREGEGATDVLVATEGGYAKRTPADQYPVQKRGGKG 755

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           +     +     +V A + D   ++L ++S G     + +EI  + R   G   + +S  
Sbjct: 756 VLTARIVESRGKLVGALMVDPEDEILAITSNGGVIRTKCAEIKQSQRATMGVRLMHLSKG 815

Query: 648 EKMKLVVKVT---GDH 660
             +  + + T   GD 
Sbjct: 816 NHVVAIARNTEGMGDD 831


>gi|260062506|ref|YP_003195586.1| DNA gyrase subunit A [Robiginitalea biformata HTCC2501]
 gi|88784071|gb|EAR15241.1| DNA gyrase A subunit [Robiginitalea biformata HTCC2501]
          Length = 848

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/762 (32%), Positives = 410/762 (53%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSTSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VRLAQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRLAQDWSMRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++AE +L  +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKIAEEMLADIDKETVDHQLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A ID+ +I+IE L+++I  PDFPTGG I+   + + E++  GRG   +RA
Sbjct: 185 NLSEVVDGTIAYIDDRDITIEGLMQHIKAPDFPTGG-IIYGYDGVKEAFETGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G  CIVVTEIPYQV K+ +I+K  +LI  K+I  +  IRDES      +++
Sbjct: 244 KATFEEV-QGRECIVVTEIPYQVNKADMIKKTVDLINEKKIEGIATIRDESNRKGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  S +++ F +N   L  G  P+++ L  ++  ++ HR +V+ R
Sbjct: 303 VLKRDAIPNIVLNMLYKYSALQSSFSVNNIALV-GGRPELLNLKDLIVHFVDHRHKVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAI 431
           RS + ++  + R  IL+GL+IA  NIDE+IAIIR     +     ++ RF L+E Q  AI
Sbjct: 362 RSEYELRKAEERAHILEGLIIASDNIDEVIAIIRGSANAEEARANLIKRFELSEVQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++SE + +LA  E +  +L   +++   I  E+REV++ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEVLATIEDLKDILAREERRMEIIKDELREVRDKYGD--- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+   E++ A      + MI  E + + IS+ G+I+              V   A 
Sbjct: 479 --DRRS---EINYAGGDLSIEDMIPDEQVVITISHAGYIKRTPLTEYKTQHRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             +  D L+          +L  +  G+ Y L    +  G    +  AIQ LI++  +  
Sbjct: 534 ATRNEDFLEHLFVGTNHQYMLFFTQKGQCYWLRVFEIPEGSRTSKGRAIQNLINIEQDDK 593

Query: 602 IVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +                +  +++ + KG        +     + G   + +   +++   
Sbjct: 594 VKAFICTQDLKDEEYVNSHFVIMATKKGVVKKTSLEQYSRPRQNGIIAIGIREGDELLEA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
              TG   + +  ++ K + F   +   M R   GVR  +  D     +    + +    
Sbjct: 654 RLTTGSSQIFLGLKSGKAIRFEESKTRPMGRSASGVRGITLADDNDEVIGMVSVHDFDED 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +   Y +  +     +  RGG G        ++G  ++
Sbjct: 714 ILVVSENGYGKRSSLDDYRITNRGGKGVKTISISKKTGGLVA 755



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLV 653
           ++++ I    V+D    +LVVS  G        +     R GK    +        +  +
Sbjct: 697 DNDEVIGMVSVHDFDEDILVVSENGYGKRSSLDDYRITNRGGKGVKTISISKKTGGLVAI 756

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
             V+  D + ++ ++   +  S++ +  M R  +GVRL + KD      + 
Sbjct: 757 KNVSDSDDLMIINKSGIAIRMSVEDLRTMGRATQGVRLINLKDNDSIAAVA 807


>gi|282860323|ref|ZP_06269392.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010]
 gi|282586920|gb|EFB92156.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010]
          Length = 863

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/773 (30%), Positives = 387/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDHDRIMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKFHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++ E ++  +++D VD  + +++  SEP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLAKMGERVMDDIEKDTVDMVNNFDDTLSEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNPEI+ E L+++I  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLSEVIDGCCAYIDNPEITTEGLMQFIPAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E G     IVVTEIPY V K++LIE IA+L+   R+  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEI-EAGDSHDKIVVTEIPYGVNKAQLIEYIADLVKEGRLEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L     P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALV-NGRPRLLNLRECIKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  IL+GL+IA  NIDE++ IIR    P     +   RF 
Sbjct: 358 EHRHDVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSEAQTNLEKRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+  E + L+   + +  +L++ ++    +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLAQLTGLRMDQLHEEYEQLMQTIKSLQEILDNPERCKEVMKEELNEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE +        RRT              +     +P+ + IS+ G+I+           
Sbjct: 478 KEKYGD-----DRRTEIIPDEHE---FNAEDFYPNDPVVITISHLGYIKRTPLTDFKEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       +E D  +    A     +L  + +G+ Y +   ++  G  + +  AIQ 
Sbjct: 530 RGGVGSKGARTREKDFTEYIYPATMHQTMLFFTKNGRCYWMKCYDIPEGDKNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++ L     +             +     ++ V+ KG                G   + +
Sbjct: 590 MLSLEPGDSVNAFLRIRGLDNEEFLDKHYVVFVTKKGLVKKTSLRAYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD---GGISD 699
           +  +++  V    G D + +   N +   F    +  M R   GVR     D     +  
Sbjct: 650 NESDEVVDVRLTNGNDELIIANRNGRACRFHEKHVRTMGRVSTGVRGMKLDDDCEDEVIG 709

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           ++     E  T +  +   Y +        L  RGG G        ++GK ++
Sbjct: 710 MVVVNDAENETVMVVSEEGYGKRSLVDDYRLTNRGGKGVKTLNITEKTGKLVA 762



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 93/272 (34%), Gaps = 17/272 (6%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             + +  +    +      +  D        +   I   +        +  D        
Sbjct: 552 ATMHQTMLFFTKNGRCYWMKCYDIPEGDKNSKGRAIQNMLSL------EPGDSVNAFLRI 605

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
             +   +       +   +   V  ++       +++   + A++  E D +      + 
Sbjct: 606 RGLDNEEFLDKHYVVFVTKKGLVKKTSLRAYSRPRTN--GVIAININESDEVVDVRLTNG 663

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYD--STCKLLV 616
            D +++ + +G+A      ++ +       ++ + +D +   +++   V +      ++V
Sbjct: 664 NDELIIANRNGRACRFHEKHVRTMGRVSTGVRGMKLDDDCEDEVIGMVVVNDAENETVMV 723

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLI 672
           VS +G        +     R GK    ++  EK   +  +  VT D  + ++ ++  ++ 
Sbjct: 724 VSEEGYGKRSLVDDYRLTNRGGKGVKTLNITEKTGKLVAIKTVTDDNDLMIINKSGIVIR 783

Query: 673 FSIDQIPEMSRG-KGVRLQSY-KDGGISDVIC 702
            ++ +   M R  +GVRL +  K       +C
Sbjct: 784 MAVAKCRVMGRATQGVRLINLSKKNDTIASVC 815


>gi|225386348|ref|ZP_03756112.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme
           DSM 15981]
 gi|225047530|gb|EEG57776.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme
           DSM 15981]
          Length = 850

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/762 (30%), Positives = 388/762 (50%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        +K
Sbjct: 7   DKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D V+F   ++E + EPVV PS++PNLL NG SGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVNFVPNFDETEREPVVLPSRYPNLLVNGASGIAVGMATNIPPH 186

Query: 195 NVQEICEAALAL-----IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +      ++ E ++E+L+E + GPDFPTG  I+  R +I ++YR GR  
Sbjct: 187 NLREVVGAVVKMIDNRVQEDRETTMEELMEIVKGPDFPTGATIL-GRRAIEQAYRTGRSK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA   +E +  G   I+V+E+PY V K+RLIEKIA+L+  K+I  +  I DES  + 
Sbjct: 246 IKVRAVTNIETMANGKSRIIVSELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  +   + ++  F + M  L     P+V+ L  +L  +L H+ 
Sbjct: 306 MRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVDS-QPKVLNLHQMLDYYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTEN 426
           +V+ RR+ + +   + R  IL+GLLIA  +IDE+I+IIR              RF L++ 
Sbjct: 365 DVVRRRTQYDLNKAEERAHILEGLLIALDHIDEVISIIRGSANVSEAKRLLTERFGLSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +I++E   L A   ++ ++L   K+    I  EI  + + +
Sbjct: 425 QAQAIVDMRLRALTGLEREKIENEYKELQARISELKAILADEKKLLTVIKDEITVIADKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSV 538
                   RRT        D     + +I  E   + +++ G+I+ +             
Sbjct: 485 GD-----DRRTAI----GYDDDMSMEDLIPDEDTVIAMTHLGYIKRMDVDNFRSQNRGGK 535

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +  +   E D ++  L       ++  +  G+ Y L A  +        G AI  L+ L
Sbjct: 536 GIKGMQTIEEDYIEDLLMTTNHHYVMCFTNTGRVYRLKAYEIPEAGRTARGTAIVNLLQL 595

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y+    L + +  G        E     + G   + +   +++  V
Sbjct: 596 QPEEKITAIIPMREYNEDKYLFMATKGGMVKKTPMCEYENVRKNGLQAIVLRENDELIEV 655

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
                 + + ++ +N   + F    +    R   GV    ++DG     +     +G + 
Sbjct: 656 KATDNQEDIFLITKNGMCIRFHETDVRVTGRVSMGVIGMRFEDGDEVIGMQMA-SQGDSL 714

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +     +           RGG G +  K   ++G  + +
Sbjct: 715 LVVSENGMGKRTVINEFSAQNRGGKGVICYKITEKTGCLIGA 756



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 58/192 (30%), Gaps = 6/192 (3%)

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
                      L A+  +E D L         + I L++ +G        ++        
Sbjct: 630 MCEYENVRKNGLQAIVLRENDELIEVKATDNQEDIFLITKNGMCIRFHETDVRVTGRVSM 689

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            +  +       +++   +      LLVVS  G       +E  A  R GK  +     E
Sbjct: 690 GVIGMR-FEDGDEVIGMQMASQGDSLLVVSENGMGKRTVINEFSAQNRGGKGVICYKITE 748

Query: 649 K---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           K   +     V  G  + ++     ++   +D I  + R   GV+L +        V   
Sbjct: 749 KTGCLIGAKLVDDGREIMMITTEGIVIRMVVDDISVIGRNTSGVKLMAIDHDSDIKVASI 808

Query: 704 KICEGLTWIDSA 715
                    DS 
Sbjct: 809 AKVRESVTKDSN 820



 Score = 40.9 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 48/412 (11%), Positives = 128/412 (31%), Gaps = 9/412 (2%)

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +R    V E  R  +    +++   Q      +  +  L   K     ++++   +E  
Sbjct: 401 IIRGSANVSEAKRLLTERFGLSDAQAQAIVDMRLRALTGLEREKIENEYKELQARISELK 460

Query: 310 RIVLFPKN---RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            I+   K       D   ++   +   D  T    + ++     +P    +  +      
Sbjct: 461 AILADEKKLLTVIKDEITVIADKYGD-DRRTAIGYDDDMSMEDLIPDEDTVIAMTHLGYI 519

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R +V   RS  R     + ++ ++   I  L +      +        V   +      
Sbjct: 520 KRMDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHYVMCFTNTGRVYRLKAYEIPE 579

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
                    + +L +L+  +  + +  +    E     + +      +      E     
Sbjct: 580 AGRTARGTAIVNLLQLQPEEKITAIIPMREYNEDKYLFMATKGGMVKKTPMCEYENVRKN 639

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                + R      EV   D    +   +  +    +  +   +R     S+ +  + F+
Sbjct: 640 GLQAIVLRENDELIEVKATDNQ--EDIFLITKNGMCIRFHETDVRVTGRVSMGVIGMRFE 697

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           +GD +     A   D +L++S +G           +    G+ +           ++ A 
Sbjct: 698 DGDEVIGMQMASQGDSLLVVSENGMGKRTVINEFSAQNRGGKGVICYKITEKTGCLIGAK 757

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           + D   ++++++++G    +   +I    R   G   + +  +  +K+    
Sbjct: 758 LVDDGREIMMITTEGIVIRMVVDDISVIGRNTSGVKLMAIDHDSDIKVASIA 809


>gi|73916172|gb|AAZ92954.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|261879213|ref|ZP_06005640.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis
           DSM 17361]
 gi|270334161|gb|EFA44947.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis
           DSM 17361]
          Length = 878

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/780 (29%), Positives = 389/780 (49%), Gaps = 43/780 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDHDRIMKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMLGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E I+  +D+D VD  + +++  +EP V P++ PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHIMDDIDKDTVDMVNNFDDTLTEPAVMPTRVPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNPEI  E L++YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAFIDNPEIDTEGLMQYIPAPDFPTGAYIY-GIQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E       IVVTEIPY V K +LIE IAEL+   +I  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEI-ESDESHDRIVVTEIPYGVNKQQLIEYIAELVKEGKIEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR------VPQVMPLDG 359
                 ++    R  +  +++  +F ++ +++ F +N   L   +       P+++ L  
Sbjct: 299 GRQGMRIVVDVKRDANARVILNKLFKMTALQSSFSVNNIALIPNKSNHAQLRPKLLSLRE 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---V 416
            +  ++ HR EV  RR+ F ++    R  ILKGL+IA  NIDE++ IIR    P      
Sbjct: 359 CISYFIDHRHEVTIRRTKFDLRKAQERAHILKGLIIACDNIDEVVHIIRGSKTPAEAQAN 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +  RF L   Q  AI+++RL  L  L   Q+ +E ++L+   +++ S+L+  ++    + 
Sbjct: 419 LEKRFELDNLQSKAIVDMRLSQLTGLRMDQLHAEYEDLMKLIDELQSVLDDPEKCKEVMK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-- 534
            E++ VK  +        RRT        +     +     +P+ + +S+ G+I+     
Sbjct: 479 TELQAVKAKYGDE-----RRTRII---LDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLS 530

Query: 535 ------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
                    V     H ++ D  +    A     ++  +  G+ Y L   ++  G    +
Sbjct: 531 DFREQARGGVGSKGAHTRDKDFTEYIYPATMHQTMMFFTKKGRCYWLHCYDIPEGDKTSK 590

Query: 589 --AIQLLIDLNHNQDIVTAF----------VYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             AIQ L++++ +  +               + ++  ++  +  G        E      
Sbjct: 591 GRAIQNLLNIDPDDSVNAFLRLRGRGFEDEEFVNSHYVVFATKNGTVKKTNLKEYSRPRA 650

Query: 637 KGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            G   + +   +++  V    G + + +   N + + F    I  M R   GVR     D
Sbjct: 651 NGVIAINIVEGDEVVDVRLTNGNNELILANRNGRAVRFDEQAIRSMGRVSTGVRGMRIDD 710

Query: 695 --GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  +I     E  T +  +   Y +  +        RGG G        ++G+ ++
Sbjct: 711 EGDAVVGMIVVNNAETETVMVVSEEGYGKRSDVADYRKTNRGGKGVKTMSITEKTGRLVA 770


>gi|328950542|ref|YP_004367877.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884]
 gi|328450866|gb|AEB11767.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884]
          Length = 804

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/757 (33%), Positives = 406/757 (53%), Gaps = 31/757 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             V  V +   +++ ++ YA+S I +RA+PD+RDG KPV RRI++AM + GL       K
Sbjct: 2   SQVLPVEITEEVKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMLQEGLLPNRKHSK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA +VGEVI K HPHGDQ+VYD++VRLAQ +  RYPL+ GQGNFG+IDGD AAAYRYTEA
Sbjct: 62  SAGVVGEVIKKYHPHGDQAVYDAMVRLAQDWNLRYPLVDGQGNFGSIDGDPAAAYRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q+A  +L+ +D++ VDF+  ++   +EP V P+ FPNLL NG++GIAVGMATS+P H
Sbjct: 122 RLSQIALELLRDIDKETVDFKPNFDGTTTEPEVLPAGFPNLLVNGSAGIAVGMATSLPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A +A+ID PEI++++++ Y+ GPDFPTGG + +    I E+Y  GRG  ++RA
Sbjct: 182 NLSEVIDALVAMIDRPEITLDEVMTYLPGPDFPTGGRLHKG--GIREAYATGRGSLKLRA 239

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   +E   G   +VVTEIPYQV K+ LI +IA L+ AK+I  +  +RDES      +  
Sbjct: 240 KVR-QEEKNGRVVLVVTEIPYQVNKAHLISQIASLVKAKKIEDIAALRDESDRQGLRIAI 298

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  +PD+++  +F  ++++T F +NM  +     P+V+PL  +++ +L HRR+V+ R
Sbjct: 299 ELKRGANPDVVLNQLFKHTNLQTSFTVNMLAIVD-GEPRVLPLLELMRHYLEHRRQVVTR 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           R+ F ++  + R  +L+GLLIA  N+DE+IA+IR            ++RF LTE Q  AI
Sbjct: 358 RTRFELKKAEERAHVLEGLLIALDNLDEVIALIRGSQDGAEAKAGLIARFGLTEVQAQAI 417

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I++E   L      + ++L    + W  +  E+  VKE       
Sbjct: 418 LDMRLQRLTGLEREKIQAEHRELQETIAYLRAILEDEARLWGVVKEELLAVKERHGD--- 474

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSAL 543
              RRT   E +        + +IE EP+ + ++  G+++              V + A 
Sbjct: 475 --TRRTVINEFAGGFNP---EDLIEDEPMVITMTAAGFLKRTPLEAYRAQGRGGVGVQAS 529

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQD 601
             K+ D       A+  D +L  +  G+ Y      L     +  G  I+ ++ L  +++
Sbjct: 530 RSKDEDEATRLFVANMHDDLLFFTNKGRVYREKVFELPEASRQARGVHIRSILPLAEDEE 589

Query: 602 IVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           + T             +  + +G        E    T  G   + +   + +  V     
Sbjct: 590 VATLLSVRGLTIPGHFVFATRRGLIKKTPIREYQNLTASGLIAINLVDGDTLIQVGVAQE 649

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE-GLTWIDSA 715
           D  V +   N + + F++ ++    R  +GVR    KDG     +           +   
Sbjct: 650 DAEVILATRNGQAIRFALTEVRATGRASQGVRGVRLKDGDEVVSLIVVPKGWTGDLLAVG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            R Y +           RGG+G L  +  P+ G+  +
Sbjct: 710 TRGYGKRTPVEEYPTQGRGGLGVLTFRSTPKVGQLAA 746



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 7/122 (5%)

Query: 594 IDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-- 649
           + L    ++V+  V     T  LL V ++G        E     R G   L   S  K  
Sbjct: 683 VRLKDGDEVVSLIVVPKGWTGDLLAVGTRGYGKRTPVEEYPTQGRGGLGVLTFRSTPKVG 742

Query: 650 -MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
            +  ++ V GD   +V       +   +DQ+ + SR   GV++ + ++            
Sbjct: 743 QLAALLAVEGDEDLLVLSRRGLAIRTRVDQVAQYSRATSGVKIMNLQEEDEIAACFVIRP 802

Query: 707 EG 708
           + 
Sbjct: 803 QD 804


>gi|89053044|ref|YP_508495.1| DNA topoisomerase IV subunit A [Jannaschia sp. CCS1]
 gi|88862593|gb|ABD53470.1| DNA topoisomerase IV subunit A [Jannaschia sp. CCS1]
          Length = 775

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/757 (52%), Positives = 521/757 (68%), Gaps = 27/757 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            +  L  A+  RYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L     F+KSA+
Sbjct: 21  ISEPLSRAIGSRYLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLASNGGFRKSAK 80

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           I G+V+G  HPHGD ++YD++ RLAQ FV RYPL+ GQGNFGNIDGD+ AA RYTEARMT
Sbjct: 81  ISGDVMGNYHPHGDAAIYDAMARLAQDFVIRYPLVDGQGNFGNIDGDNPAAARYTEARMT 140

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            VAE +L+G+ EDAV+FRD Y+    EP V P++ PNLLANG+SGIAVGMAT+IP HN+ 
Sbjct: 141 AVAEALLEGLSEDAVNFRDNYDGTLQEPEVLPAQVPNLLANGSSGIAVGMATNIPPHNLD 200

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+  A L LI  P+   E LL Y+ GPDFPTGG+IVE RES+ E+YR G+GGFRVRA   
Sbjct: 201 ELIAACLHLIKTPDARDETLLNYVQGPDFPTGGVIVEPRESMAETYRTGKGGFRVRATHE 260

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +E++GRG W IVVTEIPYQVQKS+LIEK+AELI  K++P+L D+RDESA+D+RIVL P++
Sbjct: 261 IEDLGRGQWQIVVTEIPYQVQKSKLIEKLAELIQLKKMPILADVRDESADDIRIVLEPRS 320

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +++DPD+LM +++  SD+E RF LNMNVL  GR P+V  L  +L+ +L HR++VL RRS 
Sbjct: 321 KTVDPDVLMAALYRQSDLENRFSLNMNVLIDGRTPKVCSLKEVLRAFLDHRQDVLMRRSR 380

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
            RM  ID R+E+L+G LIA+LN+D +I IIR +D PK  ++                   
Sbjct: 381 HRMAQIDHRLEVLEGFLIAFLNLDRVIDIIRYDDSPKAALMREDWGQDFVRAMSEADYVS 440

Query: 423 -------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
                  LTE QV+AILN+RLRSLR+LEE ++++E D L+ E+  ++ LL     QW +I
Sbjct: 441 PKPGEGELTEVQVEAILNMRLRSLRRLEEMELQAERDRLMEERAGLEDLLAEESLQWGRI 500

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           A E+REV++ F    D G RRT F E     +    +AMIE+EP+T+V S  GWIR++K 
Sbjct: 501 AEELREVRKKFGSRADGGARRTQFAEAGN-IEEVSLEAMIEREPVTIVCSQMGWIRAMKG 559

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H      + F++GD  + A+HA TTD++L+L + G+ YTL A  L  GRG GE ++L++D
Sbjct: 560 HVDLSQEMKFRDGDGPRFAIHAETTDKLLILGSQGRVYTLGANGLPGGRGLGEPLRLMVD 619

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           L +   IV  FV+    K L+ SS G+ F+V E +I+A TR GK  L V       +   
Sbjct: 620 LPNEVQIVDLFVHHPGAKRLMASSAGDGFLVAEEDILAQTRSGKQVLNVKDGVTASVCRA 679

Query: 656 V--TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
           V    DHVAVVGENRKLL+F + ++PEM RGKGVRLQ YKDGG+SD   F++ +GL W+D
Sbjct: 680 VAPEDDHVAVVGENRKLLVFPLTELPEMGRGKGVRLQKYKDGGLSDARTFRLEDGLVWLD 739

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            AGR   R+E +L  W  KR G G + P+GFPR  +F
Sbjct: 740 PAGR--TRTEVELGEWAAKRAGAGRMAPRGFPRDNQF 774


>gi|115525023|ref|YP_781934.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisA53]
 gi|115518970|gb|ABJ06954.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisA53]
          Length = 753

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/737 (55%), Positives = 553/737 (75%), Gaps = 2/737 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKS
Sbjct: 12  EIHEVQLRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEAR
Sbjct: 72  AKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNAAAYRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L+G+DED V FR  Y+ +  EP+V P  FPNLLANG  GIAVGMAT+IP HN
Sbjct: 132 MTDVARLLLEGIDEDGVAFRANYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATAIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LID P+   + LL+++ GPDFPTGG+I++SRESI E+Y  GRG FR RA+
Sbjct: 192 AAELCDAALHLIDKPDAKSKALLKWVKGPDFPTGGVIIDSRESIAEAYSTGRGAFRTRAK 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE  RG+W +V+TEIP+ VQKSRLIEKIAEL+  K++PL+ D+RDESAED+R+V+ P
Sbjct: 252 WSQEEGARGTWVVVITEIPWLVQKSRLIEKIAELLNEKKLPLVGDVRDESAEDIRLVIEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++DP+LLMES+F L+++E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL RR
Sbjct: 312 KSRTVDPELLMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S++R   I+ R+E+L G LIAYLNID++I IIR ED+PKPV++  F LT+ Q +AILN+R
Sbjct: 372 SNYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMRTFKLTDIQAEAILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE++I++E  NL AE + I+++L S K+QW ++  ++R+V+++F   T LG+R
Sbjct: 432 LRSLRKLEEFEIRTEDKNLRAELKGINAILASEKEQWAKVGEQVRKVRDLFGPKTALGKR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT+F +    D A +++A +E+EP+T+V+S++GW+R+LK H  DLS+L FK+ D L    
Sbjct: 492 RTSFADAPEHDLAAIEEAFVEREPVTIVVSDKGWVRTLKGHVADLSSLAFKQDDKLGTTF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A TT +++L +T+G+ Y+L    L  GRGHGE I++ IDL+ +  IV+ FV     + L
Sbjct: 552 FAETTSKLMLFATNGRFYSLEVAKLPGGRGHGEPIRMFIDLDQDAAIVSLFVSTGDRRFL 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           V S  G  F+V E++ ++NTRKGK  L V   +E +   VV    D VAV+GENRK+L+F
Sbjct: 612 VASHDGQGFVVGEADCVSNTRKGKQVLNVEMPNEARALTVVGEGADTVAVIGENRKMLLF 671

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            +DQ+PEM++G+GVRLQ YKDGG+SD++ F    GLTW DSAGR ++ +  +L  W G R
Sbjct: 672 PLDQVPEMAKGRGVRLQKYKDGGLSDIVAFNAKAGLTWRDSAGREFSATIKELAEWRGNR 731

Query: 734 GGVGSLVPKGFPRSGKF 750
              G L PKGFP+S KF
Sbjct: 732 ADAGRLPPKGFPKSNKF 748


>gi|159042777|ref|YP_001531571.1| DNA topoisomerase IV subunit A [Dinoroseobacter shibae DFL 12]
 gi|157910537|gb|ABV91970.1| DNA topoisomerase IV, A subunit [Dinoroseobacter shibae DFL 12]
          Length = 777

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/771 (51%), Positives = 528/771 (68%), Gaps = 24/771 (3%)

Query: 3   VDNISNSNTLVEENVK-AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
             N+ + +       + +  LR A+  RYL YALSTI  RA+PD RDG KPVHRRI++AM
Sbjct: 7   DPNMDDPDAEEPGAAQTSEPLRRAIGARYLQYALSTIMHRALPDARDGLKPVHRRILYAM 66

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNI
Sbjct: 67  RELRLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 126

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD+ AA RYTEAR+T  AE +++G+ E+AVDFRD Y+   +EP V P+ FPNLLANG+S
Sbjct: 127 DGDNPAASRYTEARLTAAAEALMEGLAENAVDFRDNYDGTLTEPEVLPAAFPNLLANGSS 186

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  L LI  P    E LLE I GPDFPTGG+IVE +ESI +
Sbjct: 187 GIAVGMATNIPPHNLHELIDGCLHLIRAPNARDETLLEMIPGPDFPTGGVIVEPKESIAQ 246

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG FR+RARW  E++GRG W IV+TEIPYQVQKS+LIEKIA+LI  K++P+L DI
Sbjct: 247 AYATGRGAFRLRARWAREDLGRGQWQIVITEIPYQVQKSKLIEKIADLIQTKKVPILADI 306

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDESA+DVRI+L P+++++DP++LM ++F LS++ETRF LNMNVL  GR P+V  L  +L
Sbjct: 307 RDESADDVRIILEPRSKNVDPEVLMGTLFRLSELETRFSLNMNVLIDGRTPKVCSLREVL 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + +L HRR+VL RRS  R+  ID R+E+L+G L+A+LN+D +I IIR ++ PK  ++   
Sbjct: 367 RAFLDHRRDVLGRRSRHRLAKIDHRLEVLEGFLVAFLNLDRVIDIIRYDEDPKAALMRED 426

Query: 422 S----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  LTE Q +AILN+RLRSLR+LEE ++ SE D L+AE+ 
Sbjct: 427 WSLKHVRATDEADYKTPAPGEGELTEVQAEAILNMRLRSLRRLEEMELISERDALMAERA 486

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           +++ LL     QW +IA E+REV++ F K T LG+RRT F  V+        + MIE+EP
Sbjct: 487 ELEDLLADEALQWARIADELREVRKQFGKGTALGKRRTDFA-VATEMAEVSLEDMIEREP 545

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           ITVV S  GWIR++K H     AL FK+GD  +   HA TTD++L    +G+ YTL    
Sbjct: 546 ITVVCSKMGWIRAMKGHVALDQALKFKDGDEGRFIFHAETTDKLLAFGANGRFYTLSCAA 605

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L  GRG GE I+L++DL +  ++V  F++    +L+V S  G+ FIV E+E++A TR GK
Sbjct: 606 LPGGRGMGEPIRLMVDLPNEAELVDLFLHVPGRRLIVASDAGDGFIVPETEVLAQTRTGK 665

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
             L V S  +  L   V GD +A VGENRKLL+F+ D++PEM RGKGVRLQ YKDGG+SD
Sbjct: 666 QVLNVKSPHRALLARPVAGDAIAAVGENRKLLVFAADELPEMGRGKGVRLQKYKDGGLSD 725

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  F   +GL W+D+ GR+   ++ +L  W GKR G G + P+GFPR  KF
Sbjct: 726 LRSFDRAQGLQWLDAGGRTRTVADPELAEWSGKRAGTGRMAPRGFPRDNKF 776


>gi|298372913|ref|ZP_06982903.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275817|gb|EFI17368.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058]
          Length = 853

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/774 (30%), Positives = 387/774 (50%), Gaps = 37/774 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  +  V +   +   Y+ Y++S I  RA+PD+RDGFKPVHRR+++ M+E+G      +K
Sbjct: 4   QGKLIRVDIEEQMRSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMNELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y +LVRLAQP+  RYPL+ GQGNFG++DGD  AA RYTE
Sbjct: 64  KSARIVGEVMGKYHPHGDSSIYGTLVRLAQPWAMRYPLVDGQGNFGSLDGDEPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++AE +L  +D++ VDF+  ++E   EPVV P++ PNLL NG+SGIAVGMAT++  
Sbjct: 124 ARLMKLAEEMLSDIDKNTVDFQPNFDETLKEPVVLPARVPNLLVNGSSGIAVGMATNMAP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +A I NP+I+IE+L+ +I  PDFPTGG I+     + E++  GRG   +R
Sbjct: 184 HNLSETIDAIVAYIRNPQITIEELMHHIKAPDFPTGG-IIYGYAGVREAFETGRGRIIIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E    G   IVVTEIPY V ++ LI+ IA L   K++  + +I DES      ++
Sbjct: 243 SKCEIETSANGHDKIVVTEIPYMVNRAELIKAIAALAEEKKVEGIANINDESDRQGLRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++  ++  S +++ F +N   L     P+ + L  ++  ++ HR EV+ 
Sbjct: 303 IDIKRDGNANVILNKLYKYSQLQSSFSVNNVALVK-GRPRTLNLIDLISNFVEHRHEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F +     R E+L+GL+I   N+DE I IIRN   P   +  +++RFSLTE Q   
Sbjct: 362 RRTQFELDKALERAELLEGLMIILDNLDEAIQIIRNSKTPAEAQERLIARFSLTERQAAY 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ++ LRLR L  +E+ ++++E + LL   E +  +L   +++   I  E+ E+   F    
Sbjct: 422 VVELRLRQLTAMEQDKLRTEYEELLKRIEDLRDILAKVERRMKIIEDELMELGSKFGDKR 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                  T         A  Q  +       +  +     ++     V       K+ D 
Sbjct: 482 RTEIVYATEDMNPEDFYADDQMIITISHQGYIKRTALAEFKAQNRGGVGSKGGATKDEDF 541

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF-- 606
           ++    A   + +L  +  G+ Y L   ++  G    +  A+Q ++++  +  I      
Sbjct: 542 IEYIYPATMHNYMLFFTQKGRCYWLKVYDIPEGSKTSKGRAVQNMLNIEADDKINAFIRV 601

Query: 607 ------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
                  Y+S   L+  +  G              + G   + +   +++  V    G+ 
Sbjct: 602 KNLQDPDYNSKHYLVFCTQNGIIKKTCLEAYSRPRQNGVNAITIRENDQVIQVRLTDGNS 661

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD--GGISDVICFKICEGLTWIDSAG 716
            + +     + + F   ++ EM R   GV   +     G     +     +  T +  + 
Sbjct: 662 EIVIANRQGRAIRFHESKVREMGRTATGVNAMAIDKANGDEVVGMVAVADKTETVLVVSE 721

Query: 717 RSYNRSENDLL------------------GWLGKRGGVGSLVPKGFPRSGKFLS 752
           + Y +                          +  RGG G        ++GK +S
Sbjct: 722 KGYGKRSQLDELDENGNIKLDENGEPIAIYRVTNRGGKGVKTMNITEKTGKLVS 775



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 24/155 (15%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN------------------TRKG 638
           N ++ +    V D T  +LVVS KG     +  E+  N                   R G
Sbjct: 699 NGDEVVGMVAVADKTETVLVVSEKGYGKRSQLDELDENGNIKLDENGEPIAIYRVTNRGG 758

Query: 639 KTF--LKVSSE-EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY- 692
           K    + ++ +  K+  +  V   + + ++ ++   +   +  I  M R  +GVRL +  
Sbjct: 759 KGVKTMNITEKTGKLVSIKLVDDSNDIMIINKSGMAIRMHVSDIRVMGRATQGVRLINLE 818

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           +       +C    +     DS   + +++ N   
Sbjct: 819 RRNDEIAAVCKVDADIEEENDSVDNTDDKTTNVSE 853


>gi|126663630|ref|ZP_01734626.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38]
 gi|126624213|gb|EAZ94905.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38]
          Length = 851

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/763 (30%), Positives = 395/763 (51%), Gaps = 28/763 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G++  +A KK
Sbjct: 5   EKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVNSRSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VDF+  +++   EP V P+K P LL NG SGIAVGMAT++  H
Sbjct: 125 RMKKISEEMLADIDKETVDFQLNFDDTLQEPTVMPTKVPTLLINGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN +I I++L+ YI  PDFPTGG I+   E + E+++ GRG   +RA
Sbjct: 185 NLTEVVDGILAYIDNNDIEIDELINYIKAPDFPTGG-IIYGYEGVREAFKTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV  G   I+VTEIPYQV K+ +I+  A+L+  K+I  + +IRDES  +   V++
Sbjct: 244 KVGFEEVN-GREAIIVTEIPYQVNKANMIKHTADLVNDKKIEGISNIRDESDRNGMRVVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L     PQ++ L  ++  ++ HR +V+ R
Sbjct: 303 ELKRDAVPNVVLNTLYKYTQLQSSFSVNNIALVK-GRPQMLNLKDLIYHFVEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+I IIR              RF L+E Q  AI
Sbjct: 362 RAQFDLRKAEERAHILEGLIIASDNIDEVIKIIRASKDGDEARSSLIERFKLSEIQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E + ++     +  LL S + +   I  E+ E+++ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEEIMKLITYLKELLASKEMRMQVIKDELAEIRDKYGDERR 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                +          A     +       +  ++    ++     V   +   ++ D L
Sbjct: 482 SQIEYSGGDVSIEDLIADESVVITISHAGYIKRTSLSEYKTQNRGGVGQKSAGTRDQDFL 541

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD 609
           +    A     ++  +  GK Y +    +  G    +  AIQ LI++  +  +       
Sbjct: 542 EHLFVATNHQYLMYFTQKGKCYWMRVYEIPEGTKASKGRAIQNLINIESDDKVKAFICTQ 601

Query: 610 S--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                    +  L++V+ +G        +       G   + +   +++       G   
Sbjct: 602 DLKDQDYIKSHNLIMVTKQGQVKKTSLEKYSKPRVNGVAAITIKEGDELLGAKLTNGSSQ 661

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD--GGISDVICFKICE--GLTWIDSA 715
           V + G++ K++ F  ++   M R   GVR  +  D    +  ++     +      +   
Sbjct: 662 VLIAGKSGKMVRFEEEKTRPMGRTASGVRGITLADENDEVIGIVTVNKEDVNETQILVVT 721

Query: 716 GRSYNRSENDLL------GWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +    +         +  RGG G        ++G  ++
Sbjct: 722 ENGYGKRTKLVEEDGVDVYRITNRGGKGVKTLNITEKTGALIA 764



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 67/202 (33%), Gaps = 15/202 (7%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                +  K     ++A+  KEGD L  A   + + ++L+    GK              
Sbjct: 625 KTSLEKYSKPRVNGVAAITIKEGDELLGAKLTNGSSQVLIAGKSGKMVRFEEEKTRPMGR 684

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESE------IIANT 635
               ++ +   + N +++     +       ++LVV+  G     +  E           
Sbjct: 685 TASGVRGITLADENDEVIGIVTVNKEDVNETQILVVTENGYGKRTKLVEEDGVDVYRITN 744

Query: 636 RKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQ 690
           R GK    +     +   + +      D + ++ ++   +   +  +  M R  +GV+L 
Sbjct: 745 RGGKGVKTLNITEKTGALIAINNVTDDDDLMIINKSGLTIRMMVSDLRVMGRATQGVKLI 804

Query: 691 SYKDGGISDVICFKICEGLTWI 712
           + K       +   + E    +
Sbjct: 805 NIKGNDSIAAVTKVLREDEEIV 826


>gi|157826447|ref|YP_001495511.1| DNA topoisomerase IV subunit A [Rickettsia bellii OSU 85-389]
 gi|157801751|gb|ABV78474.1| DNA topoisomerase IV subunit A [Rickettsia bellii OSU 85-389]
          Length = 736

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/739 (50%), Positives = 534/739 (72%), Gaps = 4/739 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT++  L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTEICTLLMEDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LID+P+  I  ++ +I GPDFPTGGII++  + I  +Y  GRG FR
Sbjct: 181 PPHNLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRARW  EE+  G + IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRARWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  +L+E+L+HR+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI
Sbjct: 361 ITRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMQRFQLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIITEHSNLQKQQAILEEILNNPKELWKVVKKEIKAVQAKFGLNTT 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F +V+  ++     A I KEPIT++ S  GW+RSLK H+ DLS++ +KEGD+ 
Sbjct: 481 IGARRTSFEQVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNNDLSSIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIISSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITEILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD VA +GE+RKLL
Sbjct: 600 HLLLLASSIGKGFVVNSNEVMAQTKSGKQIMNVPDGHTCIACLPVNGDSVACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL+W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNREDGLSW---NSGGKVKLEKNIIAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           KRG  G L P GFP++ +F
Sbjct: 717 KRGSTGKLPPMGFPKNNRF 735


>gi|73916176|gb|AAZ92956.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|328956388|ref|YP_004373774.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4]
 gi|328672712|gb|AEB28758.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4]
          Length = 859

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/754 (31%), Positives = 383/754 (50%), Gaps = 15/754 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              +EN+K + L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+    
Sbjct: 3   EEFKENIKGIELSHEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ +  RYPL+ G GNFG++DGD AAA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQNWSYRYPLVDGHGNFGSVDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L+ +++D +D+ D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+  A   L+ NP+ +   L+E I GPDFPTGG +V  +  I ++Y  G+G  
Sbjct: 183 IPPHNLTEVISALHILMKNPDATTADLMEAIPGPDFPTGG-LVMGKSGIRKAYETGKGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +E +  G   I+V E+PY V K+RL+E+IA+L   KRI  + D+ DES  D  
Sbjct: 242 MVRAKVEIEILKNGKERIIVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R +   +++ +++ L+ ++T F  NM  +    VP+V+ L  IL+E+L H+  
Sbjct: 302 RVVIDVRRDVSASVVLNNLYKLTSLQTSFGFNMLAIV-NGVPKVLSLKSILEEYLKHQEI 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQ 427
           V+ RR+++  +  + R  IL+GL IA  +IDEII IIR           ++  + L+E Q
Sbjct: 361 VIRRRTAYDKRKAEARAHILEGLRIALDHIDEIIRIIRGSKTGDIAKTTLIETYGLSEKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++R+  L  LE  +I++E   L+A    +  +L + ++    I  E+ EV+E F 
Sbjct: 421 SQAILDMRMVRLTGLERDKIEAEYTELMALIADMADILANPERVHTIIETELLEVQERFG 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            +            +   D    +  +I       +        +S +     +  +   
Sbjct: 481 DARRTELLVGEVLSLEDEDLIEEEDIVITLTSKGYIKRLPSSEFKSQRRGGRGVQGMGVH 540

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           + D ++  +   T D +L  + +GK Y      +       +   +  L+ ++  + +  
Sbjct: 541 DDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPEYGRTAKGIPVINLLGVDSGETVQA 600

Query: 605 AFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                   +    L   +  G     +          G   + +   +++  V    GD 
Sbjct: 601 VINVRGEAEEGLYLFFTTRLGTVKRTDVKAFSNIRSNGLKAIVLKENDELMSVSVTNGDQ 660

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +       + F    +  M R   GVR    ++     +    + E    +    + 
Sbjct: 661 NIIIGTHMGYAVSFHEKDVRNMGRTAGGVRGIRLRENDYV-IGVDLLTEDSEVLIITEKG 719

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +        +  RGG G        ++G    
Sbjct: 720 YGKRTKASEYAIKGRGGKGIKTANITSKNGNLAG 753



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 62/190 (32%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L      +    I++ +  G A +    ++ +
Sbjct: 622 TVKRTDVKAFSNIRSNGLKAIVLKENDELMSVSVTNGDQNIIIGTHMGYAVSFHEKDVRN 681

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                      I L  N  ++   +     ++L+++ KG     + SE     R GK   
Sbjct: 682 MGRTA-GGVRGIRLRENDYVIGVDLLTEDSEVLIITEKGYGKRTKASEYAIKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++     ++ F++  + +  R   GVR+    +   
Sbjct: 741 TANITSKNGNLAGLTTVKGDEDIMLITNTGVIIRFNVSAVSQTGRATLGVRVIRVAEDVK 800

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 801 VSTMAKVDAE 810


>gi|302187665|ref|ZP_07264338.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae 642]
          Length = 926

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/834 (30%), Positives = 412/834 (49%), Gaps = 104/834 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE+++++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++  E   
Sbjct: 422 VEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +LNS  +    I  E+  ++  +  +     RRT   +   A        
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +L+
Sbjct: 534 LITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLM 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----------- 612
            S+ GK Y L    +        G  +  L+ L+  + I T    D              
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEA 653

Query: 613 -------------------------------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                                           + + ++ G                G   
Sbjct: 654 LEGELDDAENSSESEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIA 713

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           L++   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    
Sbjct: 714 LELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLI 773

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLI-PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++L  S +
Sbjct: 732 QEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMR-LPEGQKLISMLIPEEGSQILTASER 790

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L+   + 
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVG 850

Query: 677 QIPEMSR-GKGVRLQSYKDGG 696
           ++  + R  +GV L       
Sbjct: 851 EVSSLGRNTQGVTLIKLASDE 871


>gi|73916156|gb|AAZ92946.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916232|gb|AAZ92984.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|325279425|ref|YP_004251967.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712]
 gi|324311234|gb|ADY31787.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712]
          Length = 840

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/761 (29%), Positives = 387/761 (50%), Gaps = 33/761 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+GL  G  +KK
Sbjct: 6   EKIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMDELGLTSGKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTEA
Sbjct: 66  SARIVGEVLGKYHPHGDSSVYMAMVRMAQEWSLRYPLVDGQGNFGSVDGDSPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ E +L  +D+D VD  D ++    EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 126 RMAKITEDMLVDIDKDTVDMMDNFDGSLKEPTVLPTRIPYLLVNGASGIAVGMATNMPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+++  +A  A IDN +I IE+L++ I  PDFPTGG I      + ESY  GRG   +R 
Sbjct: 186 NIKDAIDAICAYIDNNDIDIEELIKIIKAPDFPTGGTIY-GYSGVRESYLTGRGRVVIRP 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +  G   ++V EIPY V K+ LI +IA+LI  K+I  + +I DES  +   ++ 
Sbjct: 245 KTSVEVMPNGREKLIVHEIPYMVNKAELISRIADLINEKKIDGISNINDESDREGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +    ++++ ++   + +++ F +N   L     P+++ L  I++ ++ HR +V+ R
Sbjct: 305 DIKKDAISNVVLNTLLKHTALQSSFGVNNVALVH-GRPRLLNLKDIIRYFVEHRHDVVVR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  +IDE+I +IR    P+    +      LT+ Q  AI
Sbjct: 364 RTQFELRKAEERAHILEGLIIASDHIDEVIRLIRASKTPQDAQAALMDAFSLTDKQAAAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RL  L  LE+ ++++E +++      ++ +L   + +   I  E+  VK  +     
Sbjct: 424 VAMRLGQLTGLEQDKLRAEYEDIEKLIAHLNDVLAHVELRMEIIKNELLAVKAQYGD--- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT       A +    +     E + + IS+ G+I+              V     
Sbjct: 481 --DRRTDIV---YASEEFNPEDFYADEEMVITISHMGYIKRTPLSEYKVQNRGGVGSKGS 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             ++ D L+  + A   + +L  +  GK + L    +  G    +  AIQ L+++  +  
Sbjct: 536 ATRDEDFLEHMIMATMHNTMLFFTEKGKCFWLKVYEIPEGTKQSKGRAIQNLLNIEPDDK 595

Query: 602 IVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y ++  +++ + KG              + G   + +   +++   
Sbjct: 596 VKAYINLLDLKDYDYINSNYIVLCTKKGIIKKTTLEAYSRPRQNGVNAITIKEGDQLLEA 655

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
               G+  + +  ++ K + F   ++  M R   GVR     D   +  +          
Sbjct: 656 KLTNGENDIMIAVKSGKAIRFPESKVRPMGRTASGVRGIWMDDDDEAIGMVCVEPNNANI 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +   + +        +  RGG G        ++G  ++
Sbjct: 716 LVVSENGFGKRSAIEDYRITNRGGKGVKTINMTEKTGNLIA 756



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/493 (10%), Positives = 140/493 (28%), Gaps = 22/493 (4%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I+  +   R    VR R   E         ++  +         + ++       +  
Sbjct: 347 KDIIRYFVEHRHDVVVR-RTQFELRKAEERAHILEGLIIASDHIDEVIRLIRASKTPQDA 405

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM--LSDMETRFPLNMNVLSMGRVPQV 354
               +   S  D +       R      L +        D+E       +VL+   +   
Sbjct: 406 QAALMDAFSLTDKQAAAIVAMRLGQLTGLEQDKLRAEYEDIEKLIAHLNDVLAHVELRME 465

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           +  + +L     +  +          +         + ++I   ++  I     +E K +
Sbjct: 466 IIKNELLAVKAQYGDDRRTDIVYASEEFNPEDFYADEEMVITISHMGYIKRTPLSEYKVQ 525

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                    +  + +  L   +  +  +    +           +  +    + + +   
Sbjct: 526 NRGGVGSKGSATRDEDFLEHMI--MATMHNTMLFFTEKGKCFWLKVYEIPEGTKQSKGRA 583

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I   +        +  D  +      ++   D       ++  +   +  +        +
Sbjct: 584 IQNLLNI------EPDDKVKAYINLLDLKDYDYINSNYIVLCTKKGIIKKTTLEAYSRPR 637

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            + V+   +   +   L  A   +  + I++    GKA   P   +         ++ + 
Sbjct: 638 QNGVNAITIKEGDQ--LLEAKLTNGENDIMIAVKSGKAIRFPESKVRPMGRTASGVRGIW 695

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKM 650
             + ++ I    V  +   +LVVS  G        +     R GK      +   +   +
Sbjct: 696 MDDDDEAIGMVCVEPNNANILVVSENGFGKRSAIEDYRITNRGGKGVKTINMTEKTGNLI 755

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI---- 705
            L+     D++ ++  +   +   +  +  M R  +GV+L + ++      +        
Sbjct: 756 ALIDVTDEDNLMIINRSGLTIRLEVSSLRVMGRNTQGVKLINLRNEDSIAAVAKVSAAKE 815

Query: 706 CEGLTWIDSAGRS 718
            E    +    R 
Sbjct: 816 EENSEVVAEEERG 828


>gi|270308878|ref|YP_003330936.1| DNA gyrase, A subunit [Dehalococcoides sp. VS]
 gi|270154770|gb|ACZ62608.1| DNA gyrase, A subunit [Dehalococcoides sp. VS]
          Length = 809

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/755 (32%), Positives = 399/755 (52%), Gaps = 18/755 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V  N + +++   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM+++G+     
Sbjct: 1   MVTGNTRPINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVYD++VR+AQPF  RYPL+ GQGNFG++D D AAA RY
Sbjct: 61  YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ Q+AE +L  +D++ VDF   ++    EP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 121 TEARLAQIAEQLLTDIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A   LIDNP+  +++L++++ GPDFPTGG I+   + I  +Y  G+G   
Sbjct: 181 PPHNLAELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTIL-GTDGIKSAYATGKGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           ++A+  + EV      I VTEIPYQV K+ L+ KIAEL+  +++  + D+RDES      
Sbjct: 240 IQAKAHIGEVD-NRKAIFVTEIPYQVNKAELVAKIAELVKDRKLVGISDLRDESDRQGMR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  +P  ++ S++  ++M T F +NM  L     PQV+ L  +LK ++  R  +
Sbjct: 299 VVIELKRDAEPQQVLNSLYKHTNMRTSFFVNMLALVD-GQPQVLSLKEVLKNFIDFRHLI 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RRS F ++A   R  IL+GL  A   ID IIAIIR+    D  +  +++ F  +  Q 
Sbjct: 358 ITRRSQFELKAAKDRAHILEGLKKALDFIDRIIAIIRSSENGDTARKNLMAEFDFSAIQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+L+LR L  LE  +I  E   L+     ++ LL+  ++ +  +  + ++++  + +
Sbjct: 418 QAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLRGSYGQ 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKE 547
                       E    D       ++       +      +          +  +  +E
Sbjct: 478 PRATEISNQGVIEFREEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTGIMGMPTRE 537

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH---GEAIQLLIDLNHNQDIVT 604
            D+++    + T D +L  +  GK ++L   ++         G AI  LI +  ++ I  
Sbjct: 538 ADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPVTQDERITA 597

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                 + +   LL+ ++KG        E  A    G   + +++ +++   V+ T +  
Sbjct: 598 ILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDELVAAVETTEEKD 657

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRS 718
           + +     + + F + ++    R   GV+      G   +V+   +  EG   I      
Sbjct: 658 ILLATRLGQSIRFPVSELRTSLRASGGVKAIVLSKGD--EVVSMDVAQEGTLVITVTENG 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +           R G G +  K   ++G+ ++S
Sbjct: 716 AGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVAS 750



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 67/225 (29%), Gaps = 16/225 (7%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 R T   ++              K  I                S  L A+     
Sbjct: 588 PVTQDERITAILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVR----SSGLIAMDLATS 643

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L  A+       ILL +  G++   P   L +           I L+   ++V+  V 
Sbjct: 644 DELVAAVETTEEKDILLATRLGQSIRFPVSELRTSLRAS-GGVKAIVLSKGDEVVSMDVA 702

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVV 664
                ++ V+  G   +    E     R G   +       + E +   V    D + ++
Sbjct: 703 QEGTLVITVTENGAGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVASKVVSETDQMMLI 762

Query: 665 GENRKLLIFSIDQ------IPEMSRG-KGVRLQSYKDGGISDVIC 702
             +  +    + +      IP M R  +GVR+   ++G     + 
Sbjct: 763 SADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAVA 807


>gi|73916230|gb|AAZ92983.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916234|gb|AAZ92985.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|330889346|gb|EGH22007.1| DNA gyrase subunit A [Pseudomonas syringae pv. mori str. 301020]
          Length = 928

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/834 (30%), Positives = 413/834 (49%), Gaps = 104/834 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE++I++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++  E   
Sbjct: 422 VEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +LNS  +    I  E+  ++  +  +     RRT   +   A        
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELEVIRSEYGDA-----RRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +L+
Sbjct: 534 LITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLM 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----------- 612
            S+ GK Y L    +        G  +  L+ L+  + I T    D              
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEA 653

Query: 613 -------------------------------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                                           + + ++ G                G   
Sbjct: 654 LEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIA 713

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           L++   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    
Sbjct: 714 LELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLI 773

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     EG   + ++ R Y +          KRGG+G +      R+G+ + +
Sbjct: 774 SMLI-PEEGSQILTASERGYGKRTAISEFPEYKRGGLGVIAMVSNERNGRLVGA 826



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 54/141 (38%), Gaps = 6/141 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++L  S +
Sbjct: 732 QEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMR-LPEGQKLISMLIPEEGSQILTASER 790

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       SE     R G   + + S E+    +  V  + G+ + ++ +   L+   + 
Sbjct: 791 GYGKRTAISEFPEYKRGGLGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVG 850

Query: 677 QIPEMSR-GKGVRLQSYKDGG 696
           ++  + R  +GV L       
Sbjct: 851 EVSSLGRNTQGVTLIKLASDE 871


>gi|116332687|ref|YP_794214.1| DNA gyrase, A subunit [Lactobacillus brevis ATCC 367]
 gi|116098034|gb|ABJ63183.1| DNA gyrase subunit A [Lactobacillus brevis ATCC 367]
 gi|238767640|dbj|BAH66655.1| DNA gyrase subunit A [Lactobacillus brevis]
          Length = 844

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/767 (31%), Positives = 401/767 (52%), Gaps = 32/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ + L    V  V L   +   +L YA+S I +RA+PD+RDG KPVHRRI++ M E+G
Sbjct: 1   MADQDYL--GRVTDVDLSQTMRTSFLDYAMSVIVQRALPDVRDGLKPVHRRILYDMHELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     F+KSAR+VG+V+GK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 59  ITPDKPFRKSARMVGDVLGKYHPHGDSAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDG 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +L+ +++D +DF+D Y+  + EPVV PS+FPNLL NG SGIAV
Sbjct: 119 AAAMRYTEARLSKIAMEMLRDINKDTIDFQDNYDGSEREPVVLPSRFPNLLVNGASGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+ NP+ S+  L+E + GPDFPTGG IV  + +I  +Y  
Sbjct: 179 GMATNIPPHNLTEVISALHILMKNPDASLADLMEALPGPDFPTGG-IVMGKAAIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   +RA+  +EE   G   IV TEIPY V K++LIE+IAEL   KRI  + D+ DE+
Sbjct: 238 GKGTITLRAKVDIEEEKNGKQRIVATEIPYMVNKAKLIERIAELARDKRIEGITDVNDET 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R    ++++ +++ ++ M+T F +NM  +     P+V+ L  IL+ +L
Sbjct: 298 DRTGMRIVIDVRRDASAEVILNNLYKMTLMQTSFGINMLAIV-NGAPKVLGLKAILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
             + EV+ RR+ F ++  + R  IL+GL IA  +IDEII IIR           +++RFS
Sbjct: 357 EFQLEVIRRRTEFDLRKAEARAHILEGLRIALDHIDEIITIIRQSQTADVAKQELITRFS 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +++ E  +++A  +    +L S ++Q   I  E+ E+
Sbjct: 417 LSDKQSQAILDMRLVRLTGLEREKVEKEYADVMANIKDYKEILASKERQQAIIYEELLEI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +  F        RRT    +     +   + +I +E + V +++ G+I+           
Sbjct: 477 QNKFGD-----DRRTEL--MVGEVLSLEDEDLIAEEDVVVSLTHNGYIKRLPTSEFKAQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  +   T D +L  +  GK Y +    +       +   +  
Sbjct: 530 RGGKGVQGMGVHDDDFIEHLVATSTHDMLLFFTNTGKVYRMKGYEIPEYGRTAKGIPVIN 589

Query: 593 LIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           L+ +N+N+ +           +    L   + +G        E       G   + +  +
Sbjct: 590 LLGINNNEHVQAVINVANPGENDNRDLFFTTVQGTVKRTPVDEFANIRSNGLKAINLKED 649

Query: 648 EKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +++  V  +  D   ++G +    + F+   +  M R   GVR    ++           
Sbjct: 650 DELIDVDIINADANMIIGTHLGYAVSFAATDVRSMGRSATGVRGIRLREHDYVIGASVLK 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +       + + Y +        +  RGG G        ++G    
Sbjct: 710 PDSK-VFVISEKGYGKQTAAAEYPIKGRGGKGIKTVNVSTKNGPLAG 755



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 66/523 (12%), Positives = 152/523 (29%), Gaps = 31/523 (5%)

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A + L +  ++++ +    I       G   V   ++I++ Y   +     R R   +
Sbjct: 312 ASAEVILNNLYKMTLMQTSFGINMLAIVNGAPKVLGLKAILQYYLEFQLEVIRR-RTEFD 370

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--AKRIPLLEDIRDESAEDVRIVLFPKN 317
                +   ++  +   +     I  I             L      S +  + +L  + 
Sbjct: 371 LRKAEARAHILEGLRIALDHIDEIITIIRQSQTADVAKQELITRFSLSDKQSQAILDMRL 430

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             L      +     +D+         +L+     Q +  + +L+       +       
Sbjct: 431 VRLTGLEREKVEKEYADVMANIKDYKEILASKERQQAIIYEELLEIQNKFGDDRRTELMV 490

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-----VSRFSLTENQVDAIL 432
             + +++    I +  ++  L  +  I  +   +                  ++ ++ ++
Sbjct: 491 GEVLSLEDEDLIAEEDVVVSLTHNGYIKRLPTSEFKAQNRGGKGVQGMGVHDDDFIEHLV 550

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
                 +        K          E   +           I                 
Sbjct: 551 ATSTHDMLLFFTNTGKVYRMKGYEIPEYGRTAKGIPVINLLGINNN-------------- 596

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                    V+   +   +         TV  +      +++S+   L A++ KE D L 
Sbjct: 597 -EHVQAVINVANPGENDNRDLFFTTVQGTVKRTPVDEFANIRSN--GLKAINLKEDDELI 653

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +    +++ +  G A +  A ++ S       ++  I L  +  ++ A V     
Sbjct: 654 DVDIINADANMIIGTHLGYAVSFAATDVRSMGRSATGVRG-IRLREHDYVIGASVLKPDS 712

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENR 668
           K+ V+S KG       +E     R GK    V+       +  +  + GD  + +V    
Sbjct: 713 KVFVISEKGYGKQTAAAEYPIKGRGGKGIKTVNVSTKNGPLAGLTTLDGDEDIMLVTNKG 772

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
            ++ FS   + E  R   GV L    D      +     E  T
Sbjct: 773 VMIRFSASDVSETGRATLGVHLIRLADDTAVATMAKVAKEDET 815


>gi|301063847|ref|ZP_07204331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2]
 gi|300442050|gb|EFK06331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2]
          Length = 807

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/752 (32%), Positives = 398/752 (52%), Gaps = 29/752 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +++ YL Y++S I  RA+PD+RDG KPVHRR++ AM+++   F   FKKSAR+V
Sbjct: 10  VNIEDEMKKSYLEYSMSVIVGRALPDIRDGLKPVHRRVLFAMNDLKNFFNRPFKKSARVV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD  AA RYTE RMT+ 
Sbjct: 70  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYCLVDGQGNFGSVDGDPPAAMRYTEVRMTRT 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE  L  ++++ VDF  TY+    EP+V P+K PNLL NG+SGIAVGMAT+IP HN+ EI
Sbjct: 130 AEDFLADLEKETVDFVPTYDGTLLEPLVLPTKVPNLLINGSSGIAVGMATNIPPHNLMEI 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C     ++DNP IS+ +L+  I GPDFPT G I+  ++ I+++Y  GRG  ++R+R  VE
Sbjct: 190 CRGIEKVVDNPNISLGELMGVIPGPDFPTAGFIL-GKQGIIDAYSTGRGIIKIRSRAFVE 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       I+V+EIPYQV K +L+EKIA  +  K+I  + +IRDES  D   ++    R 
Sbjct: 249 KFAHNKERIIVSEIPYQVNKGKLLEKIAAQVREKKIEGISEIRDESDRDGMRIVIEIKRD 308

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
               +++  ++  + ME  F + +  +     P+++ L G++  ++ HRRE++ RR+ F 
Sbjct: 309 AYALVILNQLYKFTQMEVSFGIILLAIV-NGRPEILTLKGMIDHFIKHRREIIVRRTIFD 367

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNLRL 436
           ++  + R  IL+GL  A   +DE+I +IR+    K     +++ F  +E Q  AIL++RL
Sbjct: 368 LKKAEARAHILEGLKKALDFLDEVIELIRSSSDAKEAKSRLMAEFQFSEIQAQAILDMRL 427

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  +I +E + LL +     ++L +     + I  E+ E++  +        RR
Sbjct: 428 QRLTGLEREKIHAEYEALLKDIAHYKAILATPSMVLDIIKEELLEIRNAYGDE-----RR 482

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEG 548
           +   + +        + +I +E + V +S++G+I+          +     L+    KE 
Sbjct: 483 SEIIDDAEE---IDMEDLIAEEDMVVTVSHQGYIKRNPISLYRAQRRGGKGLTGAKPKEE 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D ++    A + D  L  +  G+ Y      +        G+AI  L+DL   + + T  
Sbjct: 540 DFVEHLFVASSHDYFLFFTNKGRVYWKKVHEIPEGGRMSRGKAIVNLLDLKKGERLATIL 599

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
               Y+    +++ +  G     E          G   LK+   +++  V   +GD  + 
Sbjct: 600 PVRDYEEGKYVVMATKMGFVKKTELKAYSHPRSVGTIGLKIRENDELIAVRVSSGDQDIF 659

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +  +  K + F   ++  M R   G      + G    V    + EG T +      + +
Sbjct: 660 LTTKEGKSIRFKESELRSMGRVAAGNIGIKMETGNEV-VGMETLGEGATILTVTENGFGK 718

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             N        R G G +  K   R+G  + +
Sbjct: 719 RTNREEYPTQARAGKGVITIKTSERNGLVVYA 750



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 62/188 (32%), Gaps = 6/188 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                      SV    L  +E D L     +     I L + +GK+       L S   
Sbjct: 621 KTELKAYSHPRSVGTIGLKIRENDELIAVRVSSGDQDIFLTTKEGKSIRFKESELRSMGR 680

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              A  + I +    ++V          +L V+  G        E     R GK  + + 
Sbjct: 681 VA-AGNIGIKMETGNEVVGMETLGEGATILTVTENGFGKRTNREEYPTQARAGKGVITIK 739

Query: 646 SEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           + E+  LVV        D + ++  + K++      I  + R  +GV+L    +G     
Sbjct: 740 TSERNGLVVYAYEVTDQDELMIITGHGKIIRIRAADISVIGRNTQGVKLIDLGEGEKVVG 799

Query: 701 ICFKICEG 708
           +   + + 
Sbjct: 800 VAKIMEDD 807



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 2/152 (1%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           Q   +  +    +      +RS+   +     +  + G+ +           IL ++ +G
Sbjct: 656 QDIFLTTKEGKSIRFKESELRSMGRVAAGNIGIKMETGNEVVGMETLGEGATILTVTENG 715

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +    G+ +  +     N  +V A+      +L++++  G    +  ++
Sbjct: 716 FGKRTNREEYPTQARAGKGVITIKTSERNGLVVYAYEVTDQDELMIITGHGKIIRIRAAD 775

Query: 631 IIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
           I    R   G   + +   EK+  V K+  D 
Sbjct: 776 ISVIGRNTQGVKLIDLGEGEKVVGVAKIMEDD 807


>gi|310777812|ref|YP_003966145.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926]
 gi|309747135|gb|ADO81797.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926]
          Length = 819

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/746 (33%), Positives = 401/746 (53%), Gaps = 14/746 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N+    +   +++ YL Y++S I  RA+PD+RDG KPVHRRI+ AMSEMG+     FKK
Sbjct: 2   SNINVRYIEEEMKQSYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMSEMGMTHDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY+++VR+AQ F  RY LI G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYNTMVRMAQDFNFRYQLIDGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L  +D++ +D+R  +++   EP V P+K PNLL NG +GIAVGMAT+IP H
Sbjct: 122 RMAKITSELLVDIDKNTIDYRKNFDDSLDEPQVLPAKLPNLLLNGATGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALI+N EI+ E+L+EY+ GPDFPTGGII    + I E+Y  GRG  RVR 
Sbjct: 182 NLGELLDGVLALIENKEITPEELMEYVTGPDFPTGGIID-GTKGIYEAYTTGRGRVRVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
           +  +EE+  G   I++TEIP+QV K+RLIEKIAEL+  K+I  + D+RDES+  +   ++
Sbjct: 241 KVDIEELKNGKSNIIITEIPFQVNKARLIEKIAELVKEKKITGITDLRDESSAREGMRIV 300

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +P++++  I+  ++++  F + +  L    +P+V+ L  IL  ++ HR +V+ 
Sbjct: 301 VELKRDEEPEIVLNKIYKYTELQNTFGIILLALVD-NMPKVLNLKEILSHYINHRFDVIT 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDA 430
           RR+ + ++  + R  IL+G  +A  NID II IIR           ++ ++S ++ Q  +
Sbjct: 360 RRTKYDLEKSENRAHILEGFRVALENIDRIIEIIRGSKDGNTAREHLIEKYSFSDIQARS 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  ++++E   L+   +++  +L++ ++ ++ I  +  E+KE +S   
Sbjct: 420 ILDMKLQRLTGLEREKVENEYTALMEHIKELKDILSNDQRVYDIIKEDCEELKEKYSDER 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                               +  +       V   N    ++ K     +S  +  EGD 
Sbjct: 480 RTQIEEERLDINIEDLIKDEKVIVTLTNKGYVKRMNLDKYKAQKRGGKGVSTQNTVEGDF 539

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAF-- 606
           L+    A   D +++ +  GK Y L    +         + I  LI+L  N+ + +    
Sbjct: 540 LENMYTASNLDTLMIFTDTGKVYNLKVYEIPEFSKQSRGKLIANLINLQENEKVKSIIKT 599

Query: 607 -VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAV 663
             +  T  LL V+ +G       SE     R G   +K+   + +  V  V    D V +
Sbjct: 600 REFSDTQDLLFVTKEGLVKKTVLSEFKNLNRSGLRAIKLKDGDDLIFVGLVESPNDQVFI 659

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
             +N   + F  +    M R   GVR  + +             +  T +      Y + 
Sbjct: 660 ATKNGYSIKFPHENARNMGRATIGVRGINLRKDDDVVSAVIIKRDDTTILTVTENGYGKR 719

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSG 748
             +    L  R G G +  +   ++G
Sbjct: 720 TREDEYPLQSRSGKGVINLRCNEKTG 745



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 7/150 (4%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVV 617
             D++ + + +G +   P        G        I+L  + D+V    +      +L V
Sbjct: 653 PNDQVFIATKNGYSIKFP-HENARNMGRATIGVRGINLRKDDDVVSAVIIKRDDTTILTV 711

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           +  G      E E    +R GK  + +     +   +++      + +  +  N  ++  
Sbjct: 712 TENGYGKRTREDEYPLQSRSGKGVINLRCNEKTGVVVEVTSVTEEEELMAITSNGIVIRT 771

Query: 674 SIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
             D I  + R  +GVR+   ++      I 
Sbjct: 772 PADTISLIGRATQGVRIMRVEEDEKLVSIV 801


>gi|297624155|ref|YP_003705589.1| DNA gyrase subunit A [Truepera radiovictrix DSM 17093]
 gi|297165335|gb|ADI15046.1| DNA gyrase, A subunit [Truepera radiovictrix DSM 17093]
          Length = 827

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/762 (33%), Positives = 409/762 (53%), Gaps = 33/762 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  V  V +   ++  ++ YA+S I +RA+PD+RDG KPV RRI++AM E+GL     
Sbjct: 5   LNEGQVVPVVITDEIKTSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMQELGLFPRNK 64

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSA +VGEVI K HPHGD ++YD++VR+AQ +  RY L+ GQGNFG+IDGD AAAYRY
Sbjct: 65  YVKSAGVVGEVIKKYHPHGDTAIYDAMVRMAQDWNVRYTLVDGQGNFGSIDGDPAAAYRY 124

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT VAE IL  +D++ VDF++ ++    EP V PS  PN+L NG SGIAVGMAT+I
Sbjct: 125 TEARMTSVAEAILADIDKETVDFKENFDGTTVEPEVLPSAVPNMLVNGASGIAVGMATNI 184

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  LA++DNPEI++++L+E+I GPDFPTGG  V SR  I +++  GRG  R
Sbjct: 185 PPHNLGEVVDGLLAMLDNPEITLDELMEHIKGPDFPTGG--VMSRTGIRQAFETGRGSIR 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+   EE GRG   IVVTEIPYQV K+ LI+  A L+ +KRI  + +IRDES      
Sbjct: 243 LRAKVRFEERGRG-TSIVVTEIPYQVNKTSLIQTAAGLVRSKRIEDIANIRDESDRQGMR 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++F   R   P+L++  ++  + +++ F +N   +   R P+V+PL   L  +L HR +V
Sbjct: 302 IVFELKRGAHPELVLNQLYKYTQLQSTFSVNNLAIVD-RSPRVLPLKDALALFLDHRADV 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQV 428
           + RR++F ++    R  IL+G LIA   +DE+IA+IR           +V+ F LTE Q 
Sbjct: 361 VRRRTTFELRKARERAHILEGYLIALERLDEVIALIRGSADGPTAREGLVAEFGLTEVQA 420

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            A+L++RL+ L  LE  +++ E   L AE  +++++L    +    I  E+REVK+ F+ 
Sbjct: 421 QAVLDMRLQRLTGLEREKLQGEYRELQAEIARLEAILGDANELRKVIKRELREVKKNFAD 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDL 540
           +     RRT   +         ++ +I +E + V ++  G+I+                +
Sbjct: 481 A-----RRTQISDNDSD---ISKEDLIAEEHMVVTLTRGGYIKRTPLAAYRAQARGGRGV 532

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
           +A   KE D   + +  +T D +L  +  G+ Y     +L           ++ ++ L  
Sbjct: 533 NAQKAKEDDINSMLIVGNTHDYLLFFTDRGRVYREKIYDLPEAERAARGSHLRNILPLAE 592

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ + T      +++    +  + +G        E       G   + +   +++  V  
Sbjct: 593 DERVATVLSVRDFNAEGYFVFATRQGMIKKTAIREYGNLNASGLIAINLIEGDELVSVRH 652

Query: 656 -VTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE---GLT 710
              G HV +     + + F    + +  R  +GVR    K       +     E      
Sbjct: 653 GWDGAHVVLATREGQAIRFPEADVRDTGRATQGVRGIRLKPNDALVSLSVIAGEHLGDAE 712

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +      Y +        +  RGG G +  +  P++G  +S
Sbjct: 713 LLAVTECGYGKRTPLSDYPVQGRGGQGVITLRVTPKTGPLVS 754



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 10/197 (5%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +I           ++  L A++  EGD L    H      ++L + +G+A   P  ++  
Sbjct: 619 MIKKTAIREYGNLNASGLIAINLIEGDELVSVRHGWDGAHVVLATREGQAIRFPEADVRD 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKG 638
                + ++  I L  N  +V+  V         +LL V+  G       S+     R G
Sbjct: 679 TGRATQGVRG-IRLKPNDALVSLSVIAGEHLGDAELLAVTECGYGKRTPLSDYPVQGRGG 737

Query: 639 KTFLKVS---SEEKMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
           +  + +        +  +  V GD   +V  E   L+   + ++    R  +GV +    
Sbjct: 738 QGVITLRVTPKTGPLVSLDYVRGDEELLVLSEGGVLIRTRVGEVSRYGRPSQGVTIMRLG 797

Query: 694 DGGISDVICFKICEGLT 710
           DG     +   + E   
Sbjct: 798 DGDRVVSVMVMLAEETL 814


>gi|326692336|ref|ZP_08229341.1| DNA gyrase subunit A [Leuconostoc argentinum KCTC 3773]
          Length = 840

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/760 (31%), Positives = 383/760 (50%), Gaps = 19/760 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  N      ++  +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MSEQNDA---RIRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R+ L+ G GNFG++DGD 
Sbjct: 58  NTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++VA  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARLSKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGATGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+  A   L++NP  +   L+E + GPDFPTGG IV  +  I  +Y  
Sbjct: 178 GMATNIPTHNLGEVISAIHVLMNNPTATTSDLMEALPGPDFPTGG-IVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +E+   G   I+VTE+PY V K+RLIE+I+EL   KRI  +  IRDES
Sbjct: 237 GRGRVTVRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   +     R     +++ +++  + ++T F  NM  ++ G  PQ M L  IL+ +L
Sbjct: 297 DRDGLRISIDVRRDASASVILNNLYKETLLQTNFSFNMLAIN-GGKPQTMSLKAILEAYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            H+REV+ RR++F +Q    R  IL+GL IA  +ID II IIR+    +         ++
Sbjct: 356 THQREVIRRRTAFDLQKAQARAHILEGLRIALDHIDAIITIIRSSATSEEAKTRLIDGYA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +I+ E   L+     +  +L   ++    I  E+ E+
Sbjct: 416 LSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVELIADLKDILAHQERVDQLIYDELLEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
           +  F        +      +   D    +  +I       +    +   ++       + 
Sbjct: 476 QTKFGDERRTELQVGDVTTLEDEDLIEEEDVIITLTRNGYIKRVPQAEFKAQNRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            ++  + D +   +   T D +L  +  GK Y +    +       +   +  L+    +
Sbjct: 536 GMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVNLLHFEGD 595

Query: 600 QDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           + I T         DS   L  V+  G       SE       G   L +  ++++  V 
Sbjct: 596 EKIQTVINVRGEATDSHDYLFFVTRLGVVKRTAVSEFANIRTNGLKALTLHDDDEVLSVQ 655

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  ++   + F    +  M R   GVR    ++  +  +    + +    +
Sbjct: 656 ITDGTQSVLIATKDGYSVRFVEADVRIMGRAAAGVRGIRLRENDLV-IGADVVDDTENVL 714

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        +  RGG G        ++G    
Sbjct: 715 VITEKGYGKQTPATEYPIKGRGGKGIKTANITDKNGVLAG 754



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 10/230 (4%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           +   +  T   V      +            V  +      +++++   L AL   + D 
Sbjct: 593 EGDEKIQTVINVRGEATDSHDYLFFVTRLGVVKRTAVSEFANIRTN--GLKALTLHDDDE 650

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           +        T  +L+ + DG +        +   G   A    I L  N  ++ A V D 
Sbjct: 651 VLSVQITDGTQSVLIATKDGYSVRF-VEADVRIMGRAAAGVRGIRLRENDLVIGADVVDD 709

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
           T  +LV++ KG       +E     R GK     +  +K   +  +  V GD  + V   
Sbjct: 710 TENVLVITEKGYGKQTPATEYPIKGRGGKGIKTANITDKNGVLAGMTIVRGDEDIMVTTT 769

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
              ++ F++  + +  R   GVRL   +DG  + V      E  T  D +
Sbjct: 770 QGVMIRFAVASVSQTGRATLGVRLIRLEDG--AKVATLAKVEHETTEDVS 817


>gi|303256830|ref|ZP_07342844.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47]
 gi|302860321|gb|EFL83398.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47]
          Length = 955

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/790 (28%), Positives = 379/790 (47%), Gaps = 53/790 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
              + +SL   ++  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+   +    KK
Sbjct: 68  NKAEPISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQHKK 127

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD + Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTE 
Sbjct: 128 SARVVGDVIGKYHPHGDVAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRYTEV 187

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +++  +L+G+DEDAVDF   Y+    EP V P+ FP LL NG++GIAVGMAT+IP H
Sbjct: 188 RLKKLSSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNIPPH 247

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E   A L ++ NPE +I+++++ +  PDFPTGGI+      + E+YR GRG   +RA
Sbjct: 248 NLRETVNACLLVLRNPECTIDEIIKVMPAPDFPTGGILY-GLSDVHEAYRTGRGKAIIRA 306

Query: 255 RWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +  +EE   G+   I++ EIPYQV K  L+EKIA+L+  K+I  +  +RDES ++    +
Sbjct: 307 KTHIEEWDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMRGV 366

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++  ++  + ++  F +N+  L     P+ + +  IL E+L+ RREV+ 
Sbjct: 367 IELKRGANANVVLNLLYKNTQLQDSFGINLVALV-NGQPKQLNIKEILVEFLSFRREVVT 425

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLN-----------------IDEIIAIIRNEDKPKPV 416
           R + FR      RV +++G  IA  N                  + ++       +   +
Sbjct: 426 RVTMFRRDKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAEM 485

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+  Q   IL +RL+SL  LE+ +I +E   
Sbjct: 486 IKRANLDKKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEYKE 545

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L+     +  +L   ++    IA  +  V   F                ++      +  
Sbjct: 546 LVDTIIDLTDILAKPERVTAIIADSLETVAAEFGDERKTQIVANAENVKTKDLIPLREMV 605

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +   +   +        R+ K       A   KEGD +     A T D +L  +  G+ +
Sbjct: 606 VTLTDTGYIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLCFTNKGRLH 665

Query: 574 TLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIV 626
            L   ++  G    +   I  +++L  ++ +                + + ++ G     
Sbjct: 666 WLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAVLPISDEDYAKDLYIFMATADGTVKKT 725

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK 685
              +     R G   + +   + +       G H V +  +N K++ FS D++  M R  
Sbjct: 726 PIGDFKNQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEVRAMGRAA 785

Query: 686 -GVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            GVR     +G  +  ++     E +T + +    Y +           RG  G +  + 
Sbjct: 786 TGVRGMRLDEGQKVISMLVCGDDEDVTVLTATEFGYGKRSPLAEYTRHGRGTKGIISIQT 845

Query: 744 FPRSGKFLSS 753
             R+GK +S+
Sbjct: 846 TERNGKVVSA 855



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 62/475 (13%), Positives = 151/475 (31%), Gaps = 25/475 (5%)

Query: 231 IIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
            +VE +   + +        R  A   + E           E    ++++ L +K     
Sbjct: 440 YLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAEMIKRANLDKKFLRPE 499

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
                  L D        ++     + R      L +     ++ +      +++  +  
Sbjct: 500 DEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKI-HAEYKELVDTIIDLTDILA 558

Query: 351 VPQVMPL---DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            P+ +     D +         E   +  +       + +  L+ +++   +   I +  
Sbjct: 559 KPERVTAIIADSLETVAAEFGDERKTQIVANAENVKTKDLIPLREMVVTLTDTGYIKSQA 618

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
             E + +          + +   I+N     +    +  +       L      D    S
Sbjct: 619 SIEYRAQKRGGQGKRAAQMKEGDIINQLF--VATTHDVLLCFTNKGRLHWLNVWDVPEGS 676

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
              +   I   +    +          + T    +S  D A      +     TV  +  
Sbjct: 677 SSSKGRPIVNMLELTDDE---------KVTAVLPISDEDYAKDLYIFMATADGTVKKTPI 727

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           G  ++ +     ++A++  EGD L  A        ++L S +GK        + +     
Sbjct: 728 GDFKNQRR--AGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEVRAMGRAA 785

Query: 588 EAIQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
             ++ +  L+  Q +++  V   D    +L  +  G       +E   + R  K  + + 
Sbjct: 786 TGVRGMR-LDEGQKVISMLVCGDDEDVTVLTATEFGYGKRSPLAEYTRHGRGTKGIISIQ 844

Query: 646 SEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           + E+   +   + V   D + ++    KL+   +++I  + R  +GV L S ++G
Sbjct: 845 TTERNGKVVSALLVKENDEIILLTSTGKLVRTRVNEIRVLGRNTQGVTLISMEEG 899


>gi|330964797|gb|EGH65057.1| DNA gyrase subunit A [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 928

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/834 (30%), Positives = 413/834 (49%), Gaps = 104/834 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE++I++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIVEDLDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++  E   
Sbjct: 422 VEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +LA+  ++  +LNS  +    I  E+  ++  +  +     RRT   +   A        
Sbjct: 482 ILAQIGELIRILNSATRLMEVIREELELIRAEYGDA-----RRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +L+
Sbjct: 534 LITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLM 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----------- 612
            S+ GK Y L    +        G  +  L+ L+  + I T    D              
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEA 653

Query: 613 -------------------------------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                                           + + ++ G                G   
Sbjct: 654 LEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIA 713

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           L++   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    
Sbjct: 714 LELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLI 773

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     EG   + ++ R + +          KRGG G +      R+G+ + +
Sbjct: 774 SMLI-PEEGSQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 6/168 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  SV L AL   EGD L  A        I+L S  GK       ++ +       ++ +
Sbjct: 705 RQRSVGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGM 764

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---- 649
             L   Q +++  + +   ++L  S +G       SE     R G+  + + S E+    
Sbjct: 765 R-LPEGQKLISMLIPEEGSQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRL 823

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +  V  + G+ + ++ +   L+   + ++  + R  +GV L       
Sbjct: 824 VGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTLIKLASDE 871


>gi|224418336|ref|ZP_03656342.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|253827657|ref|ZP_04870542.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|313141867|ref|ZP_07804060.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491]
 gi|253511063|gb|EES89722.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|313130898|gb|EFR48515.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491]
          Length = 831

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/755 (33%), Positives = 402/755 (53%), Gaps = 15/755 (1%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L+ ++++ V++  +++E YL Y++S I  RA+PD RDG KPVHRRI++AM E+G+   
Sbjct: 2   SDLLNQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSK 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           A +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGDSAAA 
Sbjct: 62  AKYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+MTQ AE +L+ +D+D VDF   Y++   EP + PS+ PNLL NG++GIAVGMAT
Sbjct: 122 RYTEAKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP H + EI +A + LID+P+  + ++L++I GPDFPTGG I+  +  I E+Y  GRG 
Sbjct: 182 NIPPHRIDEIIDALVYLIDHPKAELNEILQFIEGPDFPTGG-IIYGKNGIKEAYETGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++RA+  +E+       IV+ EIPYQV K+RL+E+IAEL   K I  + ++RDES  D 
Sbjct: 241 IKIRAKTHIEKTKTK-DIIVIDEIPYQVNKARLVEQIAELAKEKVIEGIAEVRDESDRDG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    ++++  +F  + ME+ F + + +    + P++  L  +L  +++HR+
Sbjct: 300 IRVVVELKREAMSEIVLNHLFKSTPMESTFGI-ILLAIYNKEPKIFTLLELLALFISHRK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ F ++    R  IL+GL IA  NIDEI+A+IR+   P   K  ++ +F+L+E 
Sbjct: 359 SVVIRRTIFELEKAKARAHILEGLRIALENIDEIVALIRSSSDPKVAKEGLIEKFNLSEI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I++E   L+ E E + S+L S +     I  E+ EVKE F
Sbjct: 419 QAQAILDMRLQRLTGLERDKIENEYQELIKEIEYLSSILRSEELLNKIIKEELLEVKEKF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           S                          +       V                   + +  
Sbjct: 479 STKRLTAIEEDYESIDVEDLIPNEAVVVTMSHRGYVKRVPVRTYEKQNRGGKGKISANTH 538

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           + D ++    + T D I+ ++  G+ Y L    +        G+A+  LI L  ++ I+ 
Sbjct: 539 DDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIGKAVVNLISLAPDEKIMA 598

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
                 ++    +   +  G       SE       G   + +  ++++     +  +  
Sbjct: 599 TITTKDFNEDKSIAFFTKNGIIKRTNLSEFKNIRSVGVKAINLDGDDELVTAKIIHPEIQ 658

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGR 717
            + VV      + F +D + E+ R  +GV    +K              E    +  + +
Sbjct: 659 QILVVTYEGMCVRFGVDNVREIGRVARGVTAIKFKIPKDYVIGATVVSSENEEILSVSEK 718

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +        +  RGG G +  K   ++GK + 
Sbjct: 719 GIGKRTEVNEYRITNRGGKGVIAMKLTSKTGKLVG 753


>gi|254469835|ref|ZP_05083240.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062]
 gi|211961670|gb|EEA96865.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062]
          Length = 930

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/837 (30%), Positives = 394/837 (47%), Gaps = 86/837 (10%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   ++S     +  +++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++
Sbjct: 1   MADQDLSTPPGGLPSDIRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G ++   ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F  R PLI+GQGNFG+
Sbjct: 61  MHENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQDFSMRLPLINGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTE R+ +VA   L  +D+D V+F + Y+  + EP V P+++PNLL NG 
Sbjct: 121 IDGDRAAAMRYTECRLEKVAHTQLSDIDKDTVNFHENYDGSEQEPEVLPARYPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +  +A+I+ PEI++ +L+E I GPDFPTGGII+  R  I 
Sbjct: 181 GGIAVGMATNIPPHNMGEVIDGTIAMIERPEITLPELMEIIPGPDFPTGGIIL-GRAGIK 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +R++   EE+  G   I+V+EIPYQV KS +IEKIAEL+  KRI  + D
Sbjct: 240 AAYENGRGSVIMRSKVDTEEIRAGRMAIIVSEIPYQVNKSAMIEKIAELVREKRIEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES      V+    +   PD+++  ++  S ++  F  NM  L+ G  P+ + L  +
Sbjct: 300 IRDESDRQGMRVVIELKKDAVPDVIVNQLYRYSQLQQSFGCNMVALN-GGRPEQLALKDM 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----- 415
           LK ++A R EV+ RR+ F +     R  +L GL +A  NID++I +IR    P       
Sbjct: 359 LKAFIAFREEVVGRRTRFLLAKARDRAHVLVGLAVATANIDDVIHLIRTAPDPATARRQL 418

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        F L+E+Q  AIL+LRL+ L  L   +I  EL
Sbjct: 419 MERNWPAKDIEPLIQLIDDPRYAIQEDGTFKLSEDQARAILDLRLQRLTALGRDEIGDEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L AE +    +L S ++    +  E+ EV++ F+                        
Sbjct: 479 DKLAAEIKDYLDILKSRERILEIVRTELEEVRDEFATPRRTEITDGGGDLDDEDLIQRED 538

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       +        R+ +      S +  K+ D +     A+T   +L  S+ G 
Sbjct: 539 MVVTVSHSGYIKRVPLDTYRAQRRGGKGRSGMQTKDEDFVTRLFVANTHTPVLFFSSRGI 598

Query: 572 AYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNA 623
           AY +    L     +  G A+  ++ L   + I +               +L  + +G  
Sbjct: 599 AYKMKVWRLPLAGPQARGNALVNMLPLEQGERITSILPLPENEETWAELDVLFATKRGTI 658

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVK-VTGDHVAVVGENRKLLIFSIDQIPEM- 681
              + S+     + GK  +K+   + +  V+     D V +       + F    +    
Sbjct: 659 RRNKLSDFAQINKNGKIAMKLEEGDGIVNVMTSTEDDDVLLTTSAGMCIRFPTTDVRVFS 718

Query: 682 SRGK-GVRLQSYKDGGISDVI---------------------CFKICEGLT--------- 710
            R   GVR  +  +G     +                          EG           
Sbjct: 719 GRNSVGVRGINLAEGDHVISMTILRHFDCDSDERTAYLKLSRAMSGEEGAESVSFEDAGM 778

Query: 711 --------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                          +  +   Y +  +        RGG G        R+G+ ++S
Sbjct: 779 TKERFEAMDENAEVILTVSENGYGKRTSSYEYRTTGRGGKGIAAMTVNDRNGRLVAS 835



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 10/162 (6%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV-VSSK 620
           R     +D +   L     +SG    E++         +        D   ++++ VS  
Sbjct: 743 RHFDCDSDERTAYLKLSRAMSGEEGAESVSFEDAGMTKERFEAM---DENAEVILTVSEN 799

Query: 621 GNAFIVEESEIIANTR--KGKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G        E     R  KG   + V+      +        D + +V    +L+   + 
Sbjct: 800 GYGKRTSSYEYRTTGRGGKGIAAMTVNDRNGRLVASFRSEESDEIMLVTNGGQLIRCPVH 859

Query: 677 QIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDSAG 716
            I    R  +GV + +   D  +  V      +    +++ G
Sbjct: 860 GIRVAGRSTQGVIVFNTSADEKVVAVERISEADDDENVEAEG 901


>gi|303246811|ref|ZP_07333088.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ]
 gi|302491828|gb|EFL51708.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ]
          Length = 814

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/745 (31%), Positives = 390/745 (52%), Gaps = 13/745 (1%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   L++ YL Y+LS I  RAIPD+RDG KPVHRRI++AM E+   F   +KKSAR+V
Sbjct: 5   INIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELSNTFNRPYKKSARVV 64

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQ F  R P++ GQGNFG+IDGD+AAA RYTE RM+++
Sbjct: 65  GDVIGKYHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L  ++++ V FR  Y+   +EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 125 ASEFLADIEKETVGFRPNYDNSLNEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+  L  +DNP   I +LL  + GPDFPTG  I   +  ++E+Y  GRG  ++R +  +E
Sbjct: 185 CDGLLHQLDNPTCDINELLALVKGPDFPTGASIYGGK-GLIEAYTTGRGSIKIRGKAEIE 243

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E  +    +V+ EIPY + KS L+EKIA LI   RI  + D+RDES      ++    + 
Sbjct: 244 ERKKDHQSVVIREIPYALNKSSLVEKIAALINEGRIEGVSDLRDESDRKGIRIVLDLKKG 303

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           + PD+++ +++  + +ET F +   ++     P ++ +  +L+ +L+HRREV+ RR++F 
Sbjct: 304 VIPDIVINALYKYTPLETSFGI-NMLVVADNRPALLNIQQVLEHFLSHRREVVLRRTAFD 362

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRL 436
           ++  + R  IL+GL IA  NIDE+++IIR      + +  ++ RF L+E Q  AIL++RL
Sbjct: 363 LRKSEERAHILEGLRIALDNIDEVVSIIRASKNAIEARERLMERFGLSERQAQAILDMRL 422

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  ++  E + L+   E + S+L + +     I  EI E+K+ ++         
Sbjct: 423 QRLTNLERQKLIDEYNELIKLIEYLRSILENEEVLRGVIRDEITEIKDKYATPRKTEILE 482

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
                            +       +  +     +  K     ++ +     D ++    
Sbjct: 483 DLEGINILDLIPDEDVVITLSRRGYIKRTKVDSYQQQKRGGKGVAGVSTSGDDFVQSFCA 542

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDST 611
                ++LL +  G+ + LP   +  G+   +   I  L+ ++  + + TA     +   
Sbjct: 543 TTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATALAIREFSFE 602

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKL 670
              L V+ KG                G   + +   +++  V ++  +  V +       
Sbjct: 603 RYFLFVTRKGMVKRSCTDLYKNCRSTGIIAVTLKEGDELLTVKEIDDNAEVLLATNQGLS 662

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
             F I  I    R   GV+  + K    ++  +          +  +   Y +  +    
Sbjct: 663 NRFHISGIRPTGRAAAGVKGIALKGQDRVAAGVIMTGNGRNEVLTISAHGYGKRTSIEHY 722

Query: 729 WLGKRGGVGSLVPKGFPRSGKFLSS 753
            L  RGG G +  +  P++G+ + +
Sbjct: 723 PLRNRGGSGVINMRVTPKTGQVIGA 747



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDH 660
               +   ++L +S+ G              R G   + +       ++   V V   D 
Sbjct: 696 IMTGNGRNEVLTISAHGYGKRTSIEHYPLRNRGGSGVINMRVTPKTGQVIGAVMVNADDE 755

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE 707
           + ++    K++  S+  I  + R  +GV L      G   V  F + +
Sbjct: 756 LLLLTSANKIIRLSVSDISAVGRATQGVMLVRM--EGEVTVTGFDLVD 801


>gi|329919804|ref|ZP_08276755.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G]
 gi|328937151|gb|EGG33579.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G]
          Length = 815

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/765 (29%), Positives = 400/765 (52%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQN--QDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+++L+  I GPDFPTGG I+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGG-IIMGRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +     P V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVD-GSPHVLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR           +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISD--SEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 LHF--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                      +  D +   ++ +T D +L  +  GK Y+  +  +       +   I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-M 650
           I L  N  +V + + D   ++LV+S KG       SE    +R   G     V+ +   +
Sbjct: 692 IKLRANDYVVGSSIVDDHSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPL 751

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKICE 707
             V  V G + + ++ +   ++   +D + +  R   GVRL     G  ++ +   K  +
Sbjct: 752 VGVTVVDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811

Query: 708 GLTW 711
               
Sbjct: 812 NSEI 815


>gi|315654136|ref|ZP_07907052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           ATCC 55195]
 gi|315488832|gb|EFU78478.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           ATCC 55195]
          Length = 815

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/765 (29%), Positives = 399/765 (52%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQN--QDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+ +L+  I GPDFPTGG I+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGG-IIMGRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +     P V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVD-GSPHVLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR           +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISD--SEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 LHF--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                      +  D +   ++ +T D +L  +  GK Y+  +  +       +   I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-M 650
           I L  N  +V + + D   ++LV+S KG       SE    +R   G     V+ +   +
Sbjct: 692 IKLRANDYVVGSSIVDDHSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPL 751

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKICE 707
             V  V G + + ++ +   ++   +D + +  R   GVRL     G  ++ +   K  +
Sbjct: 752 VGVTVVDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811

Query: 708 GLTW 711
               
Sbjct: 812 NSEI 815


>gi|148244447|ref|YP_001219141.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA]
 gi|146326274|dbj|BAF61417.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA]
          Length = 861

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/792 (31%), Positives = 409/792 (51%), Gaps = 50/792 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           + ++T  E N   V++   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM  +G 
Sbjct: 5   TENSTNFESNFPIVTIESEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAMDVLGN 64

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  ++KKSARIVG+VIGK HPHGD +VYD++VR+AQPF  R  LI GQGNFG++DGDSA
Sbjct: 65  DYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSVDGDSA 124

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM +++  +LQ +++D VDF D Y+  +SEP V P++ PNLLANG+SGIAVG
Sbjct: 125 AAMRYTEIRMAKLSHELLQDLEKDTVDFVDNYDGSESEPSVLPARVPNLLANGSSGIAVG 184

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ EA L  I+N +I+I++LLE + GPDFPT G I+     I ++Y  G
Sbjct: 185 MATNIPPHNLNEVIEACLKTIENEDITIDELLEIMPGPDFPTAG-IINGTSGIRQAYETG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +G   +R    +   G     I+VTE+PYQV K++LI KIAEL+  KRI  +  +RDES 
Sbjct: 244 KGKIYLRCVSHI--EGEEKRSIIVTELPYQVNKAKLIGKIAELVKDKRIDGITGLRDESD 301

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   ++    R   P++++ +++ L++M+T F +NM  +    +P++M L  IL+ ++A
Sbjct: 302 KDGMSMVIELRRGEVPEVILNNLYKLTEMQTVFGINMVAIDK-GIPKLMTLKDILEAFIA 360

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------- 415
           HRR+V+ RRS F +     RV +L+GL +A  NID I+ +I++                 
Sbjct: 361 HRRDVVTRRSIFDLNKARNRVHLLEGLSVALYNIDNIVELIKSAPSSTDARSILIAKTWR 420

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                       M   + L++ QV AIL+L+L  L   E+ +I 
Sbjct: 421 SSVIIELVGNRDMAMFKPENLPKELGLQMSGDYQLSQKQVQAILDLKLHRLTGFEKDKIF 480

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E + LL   + +  +L + ++    I  E+ +++  +  +                  A
Sbjct: 481 DEFNELLERIKYLLDILQTPERLMQVICEELIDIQSNYGNARMTQILEHNIDLTLEDLIA 540

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
             ++ +       V   +    ++        SA   K+ D +     A++ D +L  S+
Sbjct: 541 QEERVVTLSHGGYVKAQSLSDYQAQCRGGKGKSATKVKDEDFVDQLFIANSHDIVLCFSS 600

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L   +L        G+ I  L+ L   + I        +D    + + +S G  
Sbjct: 601 FGKVYWLKVYDLPMASRISRGKPIINLLPLEKKEIINAILPILKFDENHFVFMATSSGTC 660

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMS 682
                +      + G   +++ + +++  V   +G+H + +   N K + F    +  + 
Sbjct: 661 KKTALTNFSKPRKGGIIAIELRNNDQLIGVEITSGEHDIMLFSANGKSIRFKESDVRIVG 720

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     DG    V      +    + +  + + +  +     +  RGG G +  
Sbjct: 721 RTAIGVRGIKLVDGDKV-VSLIVTNQDSPVLTATEKGFGKRTHLNEYRVQSRGGSGVISI 779

Query: 742 KGFPRSGKFLSS 753
           K   R+GK + +
Sbjct: 780 KTSDRNGKIIGA 791



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 67/229 (29%), Gaps = 7/229 (3%)

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            +              +   +     +            K     + A+  +  D L   
Sbjct: 631 EKKEIINAILPILKFDENHFVFMATSSGTCKKTALTNFSKPRKGGIIAIELRNNDQLIGV 690

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S +GK+      ++         ++  I L     +V+  V +    +
Sbjct: 691 EITSGEHDIMLFSANGKSIRFKESDVRIVGRTAIGVRG-IKLVDGDKVVSLIVTNQDSPV 749

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  + KG       +E    +R G   + + + ++    +  +     D + ++     L
Sbjct: 750 LTATEKGFGKRTHLNEYRVQSRGGSGVISIKTSDRNGKIIGAIQVTNEDEMMLISNKGIL 809

Query: 671 LIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGR 717
           +      +  + R  +GV L +  KD  +  +      E       +  
Sbjct: 810 VRARAADVSIIGRNTQGVILINISKDEKLVSIAKVVETEDDKSESKSKN 858



 Score = 40.9 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 16/189 (8%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538
             FSK    G       E+   D+    +    +  I +  S  G     K   V     
Sbjct: 666 TNFSKPRKGG---IIAIELRNNDQLIGVEITSGEHDIML-FSANGKSIRFKESDVRIVGR 721

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
               +  +   +GD +   +  +    +L  +  G                G  +  +  
Sbjct: 722 TAIGVRGIKLVDGDKVVSLIVTNQDSPVLTATEKGFGKRTHLNEYRVQSRGGSGVISIKT 781

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLV 653
            + N  I+ A    +  +++++S+KG       +++    R   G   + +S +EK+  +
Sbjct: 782 SDRNGKIIGAIQVTNEDEMMLISNKGILVRARAADVSIIGRNTQGVILINISKDEKLVSI 841

Query: 654 VKV--TGDH 660
            KV  T D 
Sbjct: 842 AKVVETEDD 850


>gi|330877041|gb|EGH11190.1| DNA gyrase subunit A [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 928

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/834 (30%), Positives = 413/834 (49%), Gaps = 104/834 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE++I++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++  E   
Sbjct: 422 VEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +LA+  ++  +LNS  +    I  E+  ++  +  +     RRT   +   A        
Sbjct: 482 ILAQIGELIRILNSATRLMEVIREELELIRAEYGDA-----RRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +L+
Sbjct: 534 LITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLM 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----------- 612
            S+ GK Y L    +        G  +  L+ L+  + I T    D              
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEA 653

Query: 613 -------------------------------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                                           + + ++ G                G   
Sbjct: 654 LEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIA 713

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           L++   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    
Sbjct: 714 LELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLI 773

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     EG   + ++ R + +          KRGG G +      R+G+ + +
Sbjct: 774 SMLI-PEEGSQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 6/168 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  SV L AL   EGD L  A        I+L S  GK       ++ +       ++ +
Sbjct: 705 RQRSVGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGM 764

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---- 649
             L   Q +++  + +   ++L  S +G       SE     R G+  + + S E+    
Sbjct: 765 R-LPEGQKLISMLIPEEGSQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRL 823

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +  V  + G+ + ++ +   L+   + ++  + R  +GV L       
Sbjct: 824 VGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTLIKLASDE 871


>gi|312874805|ref|ZP_07734824.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311089550|gb|EFQ47975.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b]
          Length = 815

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/765 (29%), Positives = 399/765 (52%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQN--QDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+ +L+  I GPDFPTGG I+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGG-IIMGRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +     P V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVD-GSPHVLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR           +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISD--SEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 LHF--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                      +  D +   ++ +T D +L  +  GK Y+  +  +       +   I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-M 650
           I L  N  +V + + D   ++LV+S KG       SE    +R   G     V+ +   +
Sbjct: 692 IKLRANDYVVGSSIVDDHSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPL 751

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKICE 707
             V  V G + + ++ +   ++   +D + +  R   GVRL     G  ++ +   K  +
Sbjct: 752 VGVTVVDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811

Query: 708 GLTW 711
               
Sbjct: 812 NSEI 815


>gi|145634404|ref|ZP_01790114.1| DNA gyrase subunit A [Haemophilus influenzae PittAA]
 gi|145268384|gb|EDK08378.1| DNA gyrase subunit A [Haemophilus influenzae PittAA]
          Length = 882

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/816 (31%), Positives = 398/816 (48%), Gaps = 73/816 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D+  V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPRLFNLKEIIEAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F           +         A   
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQED 535

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   KE D ++  L A+T D IL  S+ G+
Sbjct: 536 VVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGR 595

Query: 572 AYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +
Sbjct: 596 LYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKI 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +E       G   L +  E+++  V      + + +     +++ F+ + +  M R  
Sbjct: 656 ALTEFSRPRSNGIIALNLRDEDELIGVDITNSSNEIMLFSSQGRVVRFAENAVRAMGRLA 715

Query: 685 KGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGR 717
            GVR                               D  I  V+   + +G    + +   
Sbjct: 716 TGVRGIKLALTNDISDDESAVEIEDISDDNTEASLDLNIDKVVSLVVPKGEGEILTATQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK +++
Sbjct: 776 GYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V     ++L  +  G     + SE    +R  K  + +       K+    
Sbjct: 753 NIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 812

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V   D + ++ +   L+   + ++  + R  +GVRL    D      +
Sbjct: 813 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSL 861


>gi|330464884|ref|YP_004402627.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032]
 gi|328807855|gb|AEB42027.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032]
          Length = 839

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/767 (30%), Positives = 382/767 (49%), Gaps = 36/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      
Sbjct: 22  VSHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRG 81

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RY
Sbjct: 82  YVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRY 141

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT I
Sbjct: 142 TECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKI 201

Query: 192 PSHNVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN++EI  A    +++PE     ++E LLE + GPDFPT G ++  +  I ++YR GR
Sbjct: 202 PPHNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHG-LIVGQSGIQDAYRTGR 260

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G  R+RA   VEE  RG   +VV+E+PYQV    L E+IAELI   ++  + DIRDES+ 
Sbjct: 261 GSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSG 320

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++    R     +++ +++  + ++  F  NM  L    VP+ + L   ++ ++ 
Sbjct: 321 RTGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVD-GVPRTLNLAQFIRYYVE 379

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSL 423
           H+ EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     +           +
Sbjct: 380 HQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIRLLEI 439

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q  AIL+++LR L  LE  +I  +L  L  E   +  +L   ++Q   ++ E+ E+ 
Sbjct: 440 DEIQATAILDMQLRRLAALERQRILDDLAKLELEIADLKDILAKPERQRRIVSEELGEIV 499

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------S 535
             +        RRT              + +I +E + V I+  G+ +  K         
Sbjct: 500 AKWGDE-----RRTKIIPFDGE---VSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRR 551

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLL 593
               +S    ++ D +       T D IL  +  G+ Y   A  L       +   +  L
Sbjct: 552 GGKGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANL 611

Query: 594 IDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +    ++ I       +      L++ +  G        E  +N   G   + +  E+++
Sbjct: 612 LAFQPDEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDEL 671

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
                V   D + +V +N + + F+     +  M R   GV    + D      +   + 
Sbjct: 672 VGAALVGPTDDLLLVSKNAQAIRFNATDEALRPMGRATSGVIGMRFSDEDELLAMEV-VR 730

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           EGL  + +    Y +        +  RGG G L  K   R G  + +
Sbjct: 731 EGLDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGA 777



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 13/220 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           +        ++    +  P  V+ +  G ++  +    D      + A++ ++ D L  A
Sbjct: 615 QPDEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDELVGA 674

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                TD +LL+S + +A    A +      G   +  + +  +   +++   V      
Sbjct: 675 ALVGPTDDLLLVSKNAQAIRFNATDEALRPMGRATSGVIGMRFSDEDELLAMEVVREGLD 734

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRK 669
           +LV ++ G A      E     R GK  L     E+   +   V +   D +  +  N  
Sbjct: 735 VLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPDDELFAITSNGG 794

Query: 670 LLIFSIDQIPEMS-RGK-GVRLQSYKDGGISDVICFKICE 707
           ++   +  +     R   GV+L    DG     I     E
Sbjct: 795 VIRTPVKPVRRTRDRNTMGVKLMDLPDGVTIVAIARNADE 834


>gi|309972999|gb|ADO96200.1| DNA gyrase subunit A [Haemophilus influenzae R2846]
          Length = 882

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/816 (31%), Positives = 398/816 (48%), Gaps = 73/816 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D+  V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRA 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPRLFNLKEIIEAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                   +   ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F           +         A   
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQED 535

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V         + +      SA   KE D ++  L A+T D IL  S+ G+
Sbjct: 536 VVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGR 595

Query: 572 AYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    +
Sbjct: 596 LYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKI 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +E       G   L +  E+++  V      + + +     +++ F+ + +  M R  
Sbjct: 656 ALTEFSRPRSNGIIALNLRDEDELIGVDITNSSNEIMLFSSQGRVVRFAENAVRAMGRLA 715

Query: 685 KGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAGR 717
            GVR                               D  I  V+   + +G    + +   
Sbjct: 716 TGVRGIKLALTNDISDDESAVEIEDISDDNTEASLDLNIDKVVSLVVPKGEGEILTATQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK +++
Sbjct: 776 GYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V     ++L  +  G     + SE    +R  K  + +       K+    
Sbjct: 753 NIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 812

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V   D + ++ +   L+   + ++  + R  +GVRL    D      +
Sbjct: 813 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSL 861


>gi|309804847|ref|ZP_07698909.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c]
 gi|309809733|ref|ZP_07703587.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D]
 gi|308165786|gb|EFO68007.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c]
 gi|308169912|gb|EFO71951.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D]
          Length = 815

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/765 (29%), Positives = 400/765 (52%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQN--QDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+++L+  I GPDFPTGG I+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGG-IIMGRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +     P V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVD-GSPHVLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR           +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISD--SEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 LHF--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                      +  D +   ++ +T D +L  +  GK Y+  +  +       +   I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-M 650
           I L  N  +V + + D   ++LV+S KG       SE    +R   G     V+ +   +
Sbjct: 692 IKLRANDYVVGSSIVDDHSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPL 751

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKICE 707
             V  V G + + ++ +   ++   +D + +  R   GVRL     G  ++ +   K  +
Sbjct: 752 VGVTVVDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811

Query: 708 GLTW 711
               
Sbjct: 812 NSEI 815


>gi|167629195|ref|YP_001679694.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1]
 gi|167591935|gb|ABZ83683.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1]
          Length = 812

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/757 (31%), Positives = 378/757 (49%), Gaps = 17/757 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   V  + L   +++ +L Y++S I  RA+PD+RDG KPVHRRI++ + E G
Sbjct: 1   MSD----MVGKVVPIKLEEEMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYETG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSA +VG+V+G+ HPHGD ++YD+ VRLAQ F  RY LI G GNFG+IDGD 
Sbjct: 57  RAPDKPYSKSAGLVGDVMGRYHPHGDSAIYDATVRLAQDFSTRYMLIDGHGNFGSIDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++   IL  +D++ VDF+  Y+++  EP V PS+ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTELRMAKITSYILADIDKNTVDFKPNYDDKREEPTVLPSRVPNLLLNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ EI +A + +I+NP+ ++E L+  + GPDFPTG  ++  RE I ++Y  
Sbjct: 177 GMATNIPPHNLAEIIDAVIMMIENPKATVEDLMRVVKGPDFPTGA-LIMGREGIRQAYTT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E++      I+V EIPYQV KS+L+E+IAEL+  KR+  + D+RDES
Sbjct: 236 GRGSIIMRAKARIEKMNGNKMRILVHEIPYQVNKSKLLERIAELVRDKRVDGITDLRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R ++P +++  +F  + M+  F + M  L    VP+V+ L  +L  +L
Sbjct: 296 DRRGMQIVIELRRDVNPQIVLNQLFKYTQMQETFGVIMLALVD-GVPKVLNLRDMLYYYL 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--- 422
            H+++V+ RR+ + ++  + R  IL+GL IA  NID II IIR                 
Sbjct: 355 EHQKDVIVRRTRYDLEKAEARAHILEGLRIAIDNIDRIIEIIRTSRDEDEARPILMGEFN 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I++E   LL+      ++L+S K   + I  EI E+
Sbjct: 415 LSEKQAQAILDMRLKRLAGLEREKIENEYQELLSSIAYYRAVLHSEKMVLDIIKKEISEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE F+         +          A     +       +        ++ +     ++ 
Sbjct: 475 KEKFADPRRTEITSSGADIDVEDLIAEEDAVITITHNGYIKRLPVNTYKAQRRGGRGVTG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           +  KE D ++      T   +L  +  GK Y L    +       +  AI  L+ +  ++
Sbjct: 535 MGTKEDDFVEHLFVTTTHHTLLFFTDRGKVYRLKTHEIPEASRTAKGTAIVNLLAITGDE 594

Query: 601 DIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +              L   +  G              ++G   L +   +++  V    
Sbjct: 595 KVNAVIPVKEFAADQYLFTATRSGIVKKTSLQHYDTVRKEGLIALTLDEGDELIGVKLTD 654

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G   + +   N   + F+   + EM R  +GV+      G    V    + +    +   
Sbjct: 655 GKSDILLATRNGMAVRFNETNVREMGRTARGVKGIELTQGDFV-VALDAVKDDDELLMIT 713

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +           RGG G L  +   ++G    
Sbjct: 714 ELGMGKRTPLSEYRKQNRGGKGILAMRLTNKTGLMAG 750


>gi|320527133|ref|ZP_08028320.1| DNA gyrase, A subunit [Solobacterium moorei F0204]
 gi|320132461|gb|EFW25004.1| DNA gyrase, A subunit [Solobacterium moorei F0204]
          Length = 860

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/768 (31%), Positives = 400/768 (52%), Gaps = 31/768 (4%)

Query: 3   VDNIS-NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            D +  + +     ++    L   +   +L Y++S I  RA+PD+RDG KPV RRI+++M
Sbjct: 4   DDFMEFDESNFDPGHITETELTKEIRRDFLEYSMSVIVSRALPDVRDGLKPVQRRILYSM 63

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            EM +    A++KSARIVG+ +GK HPHGD S+Y +LV LAQP+  R  L+ G GNFG++
Sbjct: 64  HEMNIGPDKAYRKSARIVGDTMGKYHPHGDSSIYGALVYLAQPWNMRTVLVDGHGNFGSM 123

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTEARM+++A  +L+ +++D VD  D Y+ ++ EP V PS++PNL+ NG+S
Sbjct: 124 DGDDPAAMRYTEARMSKIAVEMLRDLEKDTVDMIDNYDGQEKEPTVLPSRYPNLIVNGSS 183

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT++  HN+ E  +   A++DNPEI+  +L+ Y+ GPDFPTG  I+  R  I +
Sbjct: 184 GIAVGMATNVAPHNLGETIDGIFAVMDNPEITATELMNYMKGPDFPTGAYIL-GRSGIRQ 242

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           ++  GRG   +RA+  +EE+  G   IVV E+PY V K+ L+E+IA L+  K I  + D+
Sbjct: 243 AFETGRGSVIMRAKTKIEEMPNGKSRIVVYELPYMVNKASLVERIATLVRDKVIEGITDL 302

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    + + PD+++  ++  + +++ F +N  VL    VP+   +  +L
Sbjct: 303 RDESNMDGIRVVIELRKDIQPDVMLNQLYRSTPLQSNFGVNNVVLF-NGVPRQASMIDLL 361

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMV 418
           K ++A + EV+ RR+ F ++    R  IL+GL IA  N+D II  IR+   P    P ++
Sbjct: 362 KGYIAFQDEVIVRRTQFDLKKAQDRAHILEGLRIAVDNLDAIIHTIRDSRDPNEAMPRLM 421

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             F L E Q  AIL+++ R L  LE  +I++E  +LL +      +L++  +    I  E
Sbjct: 422 EGFGLDEIQAKAILDMQFRRLTGLEREKIENEYQDLLIKIADFQDILSNHARVLQIIRDE 481

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           + EVK  F+       RR+   +   A      + +I  E I + +S+ G+I+       
Sbjct: 482 LSEVKAKFNDP-----RRSEIID---AIADVEDEDLIPVENIIITLSSNGYIKRLTTDTY 533

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
                    +  +   + D +   +   T D +L+ +  GK Y +   N+       +  
Sbjct: 534 HVQNRGGKGIKGMELHKDDIIDQFISMSTHDHLLVFTDKGKVYRIKGYNVPEFSRTSKGI 593

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
               LI +   ++I     Y        L  V+ +G        E     + GK  +K++
Sbjct: 594 PAINLISMEKTENIRALVPYSQDHDSKFLFFVTKQGIIKRTTFDEYENINKNGKIAIKLN 653

Query: 646 SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            ++++  V    G+  + + G N K + F  + +  + R  +GV+  +   G +  +   
Sbjct: 654 EDDELAFVRSTDGNAEIIIAGSNGKAVRFLENTVRPLGRTARGVKGFNVDGGYVIGLAT- 712

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              EG   +      + +  +     + +RG  G        +SGK +
Sbjct: 713 -NLEGEYILTITENGFGKKSSLADYRMTRRGARGVKTVNVTQKSGKLV 759



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 5/111 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVG 665
               +L ++  G       ++     R  +    V+      K+  +  V GD    ++ 
Sbjct: 715 EGEYILTITENGFGKKSSLADYRMTRRGARGVKTVNVTQKSGKLVCMRAVRGDEDCMIMT 774

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               ++  S+ Q+   SR  +GV++ + KD  +S V   +  E    +D +
Sbjct: 775 AGGIVIRISLKQVSVYSRSAQGVKVINVKDDIVSSVAILEPEEDSEVVDIS 825


>gi|225010734|ref|ZP_03701203.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C]
 gi|225005105|gb|EEG43058.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C]
          Length = 850

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/762 (32%), Positives = 412/762 (54%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    A KK
Sbjct: 5   EKLIKINIDDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRATGAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A+ +L  +D+D VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKIADDMLIDIDKDTVDHQLNFDDTLEEPKVLPTRIPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A I+NP I I++L+ +I  PDFPTGG ++   E + E++  GRG   VRA
Sbjct: 185 NLSEVVDGTIAYIENPNIEIDELITHIKAPDFPTGG-VIFGYEGVKEAFHTGRGRVVVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV +G  CI+VTEIPYQV K+ +I+K A+L+  K+I  +  IRDES  +   +++
Sbjct: 244 KAIIEEV-QGKECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L     PQ + +  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNTLYKYTSLQSSFSVNNIALV-NGRPQQLNVKEMIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+I +IR     D+ +  ++ RF L+E Q  AI
Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIKLIRASSSPDEARESLMERFKLSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E ++++A    +  +L   +++ + I  E++EVK  +  +  
Sbjct: 422 VEMRLRQLTGLEQDKLRTEYNDIIATIADLKDILGDKERRMSIIKEELQEVKTKYGDA-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+   E++ A  +   + MI  E + + IS+ G+I+              V   A 
Sbjct: 480 ---RRS---EINYAGGSLSIEDMIPDEQVVITISHAGYIKRTALSEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-HNQDI 602
             +  D L+          +L  +  GK + +    +  G    +   +   +N   +D 
Sbjct: 534 ATRNEDFLEHLFVGTNHQYMLFFTQSGKCFWMRVYEIPEGSRTSKGRAIQNLINISQEDK 593

Query: 603 VTAFVYDST---------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           V AF+               +++ + KG        +       G   + V   +++   
Sbjct: 594 VKAFICTQDLKDEEYVNSHYVIMATKKGIVKKTTLEQYSRPRTNGINAIGVREGDELLEA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLT 710
              TG   V +  ++ K + F   +   M RG  GVR  S  +     +    +  E   
Sbjct: 654 KLTTGTSQVFLGLKSGKAIRFEESKTRPMGRGASGVRGVSLANDQDEVIGMITVHNEEDH 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + + Y +  +     +  RGG G        ++G  ++
Sbjct: 714 ILVVSEKGYGKRSSMEDYRVTNRGGKGVKTISITEKTGGLVA 755



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 104/332 (31%), Gaps = 17/332 (5%)

Query: 391 KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
           + ++I   +   I     +E K +         +  + +  L           +Y +   
Sbjct: 500 EQVVITISHAGYIKRTALSEYKTQNRGGVGQKASATRNEDFLEHLFVG--TNHQYMLFFT 557

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
                      +    S   +   I   +  + +       +  +     E   +    +
Sbjct: 558 QSGKCFWMRVYEIPEGSRTSKGRAIQN-LINISQEDKVKAFICTQDLKDEEYVNSHYVIM 616

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                  +   V  +        +++   ++A+  +EGD L  A     T ++ L    G
Sbjct: 617 -----ATKKGIVKKTTLEQYSRPRTN--GINAIGVREGDELLEAKLTTGTSQVFLGLKSG 669

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEES 629
           KA                 ++ +   N   +++    V++    +LVVS KG        
Sbjct: 670 KAIRFEESKTRPMGRGASGVRGVSLANDQDEVIGMITVHNEEDHILVVSEKGYGKRSSME 729

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG- 684
           +     R GK    +S  EK   +  +  VT  D + ++ ++   +   ++ +  M R  
Sbjct: 730 DYRVTNRGGKGVKTISITEKTGGLVAIKNVTDSDDLMIINKSGIAIRLGVEDLRVMGRAT 789

Query: 685 KGVRLQSYKDGGISDVIC-FKICEGLTWIDSA 715
           +GV+L + ++      +      E    +   
Sbjct: 790 QGVKLINIRENDSIAAVAKVMKEEEEEILSDG 821


>gi|22537121|ref|NP_687972.1| DNA gyrase subunit A [Streptococcus agalactiae 2603V/R]
 gi|76787978|ref|YP_329676.1| DNA gyrase subunit A [Streptococcus agalactiae A909]
 gi|76798726|ref|ZP_00780946.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|77411034|ref|ZP_00787389.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111]
 gi|22533982|gb|AAM99844.1|AE014235_17 DNA gyrase, A subunit [Streptococcus agalactiae 2603V/R]
 gi|76563035|gb|ABA45619.1| DNA gyrase, A subunit [Streptococcus agalactiae A909]
 gi|76585927|gb|EAO62465.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|77162958|gb|EAO73914.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111]
          Length = 819

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/755 (31%), Positives = 395/755 (52%), Gaps = 21/755 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGA-LVMGRSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R+   ++++ ++F L+ ++T F  NM  +    VP+++ L  I+  ++ H++EV
Sbjct: 300 FVIEVRRAASANVILNNLFKLTSLQTNFSFNMLAIEK-GVPKILSLRQIIDNYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F       R  IL+GLL+A  ++DE+I IIRN +     +  ++SRF L+E Q 
Sbjct: 359 IVRRTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSRFELSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
           +    R      EV   +   L +             +    +   R+ K     +    
Sbjct: 479 A---RRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTG 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
               D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L+  + I
Sbjct: 536 VNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETI 595

Query: 603 VTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
            T         +       + +G       SE     + G   + +   +++  V+ +  
Sbjct: 596 QTIINARKEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDE 655

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            + V +       + F ++ +  M R   GVR  + ++G    V   +I  G   +    
Sbjct: 656 NEDVIIGTRTGYSVRFKVNAVRNMGRTATGVRGVNLREGDKV-VGASRIVNGQEVLIITE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + Y +           RGG G        ++G   
Sbjct: 715 KGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLA 749



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 66/190 (34%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               L A++ KE D L   L     + +++ +  G +       + +
Sbjct: 619 IVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRN 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                  ++  ++L     +V A    +  ++L+++ KG     E SE     R GK   
Sbjct: 679 MGRTATGVRG-VNLREGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIK 737

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +    +LV     + + V+ +   ++  ++  I +  R   GV++        
Sbjct: 738 TANITAKNGPLARLVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAK 797

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 798 IVTVALVEQE 807


>gi|332074830|gb|EGI85302.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA41301]
          Length = 822

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 399/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT---ENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +          S     E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLYERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|309804049|ref|ZP_07698130.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d]
 gi|308163817|gb|EFO66083.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d]
          Length = 815

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/765 (29%), Positives = 401/765 (52%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQN--QDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+++L+  I GPDFPTGG I+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGG-IIMGRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +     P V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVD-GSPHVLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR           +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISD--SEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 LHF--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                      +  D +   ++ +T D +L  +  GK Y+  +  +       +   I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   +++         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGENVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-M 650
           I L  N  +V + + D   ++LV+S KG       SE    +R   G     V+ +   +
Sbjct: 692 IKLRANDYVVGSSIVDDHSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPL 751

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKICE 707
             V  V G + + ++ +   ++   +D + +  R   GVRL     G  ++ +   K  +
Sbjct: 752 VGVTVVDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811

Query: 708 GLTW 711
               
Sbjct: 812 NSEI 815


>gi|150024841|ref|YP_001295667.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86]
 gi|149771382|emb|CAL42851.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86]
          Length = 871

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/754 (30%), Positives = 398/754 (52%), Gaps = 19/754 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G+   +A KK
Sbjct: 5   EKLIPINIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGITSKSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDISVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E I+  ++++ VDF+  +++   EP V P+K P LL NG +GIAVGMAT++P H
Sbjct: 125 RMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLINGATGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA ++N +I I++L+++I  PDFPTGG I+   E + E+++ GRG   +RA
Sbjct: 185 NLTEVINGTLAYLENNDIEIDELMQHIKAPDFPTGG-IIYGYEGVREAFKTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV  G  CI+V+EIPYQV K+ +I++ A+L+  K+I  + +IRDES  +   +++
Sbjct: 244 KVGFEEVD-GRECIIVSEIPYQVNKADMIKRTADLVNEKKIEGISNIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L     PQ++ L  ++  ++ HR +V+ R
Sbjct: 303 ILKRDATPNVVLNTLYKYTQLQSSFSVNNIALVK-GRPQMLNLKDLIHYFVEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IA+IR+             RF L++ Q  AI
Sbjct: 362 RTKFDLRKAEERAHILEGLIIASDNIDEVIALIRSSKNTDEAKEKLIERFKLSDIQSRAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E + L+   E + +LL     +   I  E+ +++  +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEELMKLIEHLKALLADVNLRTALIKEELEDMRAKYGDERR 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                +          A     +       +  +N    ++     V   +   ++ D L
Sbjct: 482 SQIEYSGGDVSIEDLIADENVVITISHAGYIKRTNLNEYKTQNRGGVGQKSAGTRDADFL 541

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD 609
           +    A     ++  +  GK Y +    +  G    +  A+Q LI++  +  +       
Sbjct: 542 EHMYVATNHQYMMFFTQKGKCYWMRVYEIPEGSKTAKGRALQNLINIESDDKVKAFICTQ 601

Query: 610 S--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                    +  L++V+ KG        +       G   + +   +++       G+  
Sbjct: 602 DLKDKDYTTSHNLIMVTKKGMVKKTSLDKYSKPRVNGVAAITIKEGDELLSAQLTDGNSQ 661

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRS 718
           + +  ++ KLL F   +   M R   GVR    KD     +    + +     +  A   
Sbjct: 662 IIIAVKSGKLLRFEETKTRPMGRTASGVRGIRLKDESDEVIGLVSVNDMNSEILVVAENG 721

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +     +  RGG G        ++G+ +S
Sbjct: 722 YGKRSSLDEYRITNRGGKGVKTLNITEKTGQLIS 755



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 71/200 (35%), Gaps = 8/200 (4%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                +  K     ++A+  KEGD L  A       +I++    GK              
Sbjct: 625 KTSLDKYSKPRVNGVAAITIKEGDELLSAQLTDGNSQIIIAVKSGKLLRFEETKTRPMGR 684

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
               ++ +   + + +++     +    ++LVV+  G        E     R GK    +
Sbjct: 685 TASGVRGIRLKDESDEVIGLVSVNDMNSEILVVAENGYGKRSSLDEYRITNRGGKGVKTL 744

Query: 645 SSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD 699
           +  EK   +  +  VT  D + ++ ++   +  +++ +  M R  +GV+L + K      
Sbjct: 745 NITEKTGQLISINTVTDADDLMIINKSGLTIRMAVEDLRVMGRATQGVKLINLKGKDSIA 804

Query: 700 VI--CFKICEGLTWIDSAGR 717
            +    K       +D  G 
Sbjct: 805 AVTKVMKDDVEEILLDEDGN 824


>gi|28868951|ref|NP_791570.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968721|ref|ZP_03396863.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1]
 gi|301381336|ref|ZP_07229754.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato Max13]
 gi|302060238|ref|ZP_07251779.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato K40]
 gi|302130027|ref|ZP_07256017.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852191|gb|AAO55265.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926654|gb|EEB60207.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1]
 gi|331016841|gb|EGH96897.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 928

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/834 (30%), Positives = 413/834 (49%), Gaps = 104/834 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE++I++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++  E   
Sbjct: 422 VEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +LA+  ++  +LNS  +    I  E+  ++  +  +     RRT   +   A        
Sbjct: 482 ILAQIGELIRILNSATRLMEVIREELELIRAEYGDA-----RRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +L+
Sbjct: 534 LITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLM 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----------- 612
            S+ GK Y L    +        G  +  L+ L+  + I T    D              
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEA 653

Query: 613 -------------------------------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                                           + + ++ G                G   
Sbjct: 654 LEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIA 713

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           L++   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    
Sbjct: 714 LELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLI 773

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     EG   + ++ R + +          KRGG G +      R+G+ + +
Sbjct: 774 SMLI-PEEGSQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 6/168 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  SV L AL   EGD L  A        I+L S  GK       ++ +       ++ +
Sbjct: 705 RQRSVGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGM 764

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---- 649
             L   Q +++  + +   ++L  S +G       SE     R G+  + + S E+    
Sbjct: 765 R-LPEGQKLISMLIPEEGSQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRL 823

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +  V  + G+ + ++ +   L+   + ++  + R  +GV L       
Sbjct: 824 VGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTLIKLASDE 871


>gi|71279745|ref|YP_269051.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H]
 gi|71145485|gb|AAZ25958.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H]
          Length = 908

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/813 (31%), Positives = 396/813 (48%), Gaps = 72/813 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM  +G
Sbjct: 1   MSD----LAKQIVPVNIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  IL  +D++ VDF   Y+  +  P V P++ PNLL NGTSGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHSILADLDKETVDFVPNYDGTEHIPAVMPTRVPNLLVNGTSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A LALIDN E++ E++LE+I GPDFPT GII   R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINACLALIDNSELTFEEILEHIPGPDFPTAGIIS-GRAGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG  ++RAR  ++     G   I+V E+PYQV K+RLIEK+AEL+  KR+  +  +RDE
Sbjct: 236 GRGKIKIRARASIDVHETTGKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ M+  F LNM  L+    P++  +  +L+ +
Sbjct: 296 SDKDGMRMVIEIKRGEVGEVVLNNLYKLTQMQVSFGLNMVALT-NGQPKIFNIKEMLEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +I+N +  K          
Sbjct: 355 VLHRREVVTRRTIFELRKARDRAHILEGLSIALANIDPIIEMIKNSNNRKESEEKLISQG 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LT  Q  AI++L+L  L  +E  +I
Sbjct: 415 WELGNVANMLSEAGNDAARPEWLEPEYGIRDGLYYLTAEQAKAIVDLQLYKLSGMEHDKI 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
            SE   LL    ++  +L +  +    I  E+  +++ F           +         
Sbjct: 475 LSEYKALLDLIAELMHILATPARLMEVICEELVAIRDEFGDERRTEITNASHDLSLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      +A   KE D ++  L A+T D IL  S
Sbjct: 535 TEEDVVVTLSHEGYVKYQVLSDYEAQRRGGKGKAATKMKEEDFIERLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
             GK Y L    L   S    G  I  ++ L  ++ I        Y     +++ ++ G 
Sbjct: 595 DRGKLYWLKVFQLPLASRTARGRPIVNILPLESDERITAILPVRDYADDKYIVMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID----- 676
                          G   L +  ++ +  V    G + V +  +  K++ F+       
Sbjct: 655 VKKTRLDAYSNQRANGIIALNLRDDDTLIGVDITDGTNDVMLFSDAGKVVRFNEKVRDSE 714

Query: 677 ---------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
                           +  + R G GVR    +       +     +G   +      + 
Sbjct: 715 TGEIKLDPETGEQRWALKPIGRTGTGVRGIKLEGEQKVVSLIIPKNDGP-ILTITENGFG 773

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +        R   G +  K   R+GK + +
Sbjct: 774 KRTDLAEYPAKSRATKGVVSIKVSERNGKVVGA 806



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKM 650
           I L   Q +V+  +  +   +L ++  G     + +E  A +R  KG   +KVS    K+
Sbjct: 744 IKLEGEQKVVSLIIPKNDGPILTITENGFGKRTDLAEYPAKSRATKGVVSIKVSERNGKV 803

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
              V+V   D + ++ ++  L+   ++++  + R  +GVRL    D      +
Sbjct: 804 VGAVQVEDLDEIMLITDSGTLVRTRVNEVSVIGRNTQGVRLIRTADDEHVVAL 856


>gi|315500828|ref|YP_004079715.1| DNA gyrase, a subunit [Micromonospora sp. L5]
 gi|315407447|gb|ADU05564.1| DNA gyrase, A subunit [Micromonospora sp. L5]
          Length = 839

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/765 (30%), Positives = 382/765 (49%), Gaps = 36/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      + 
Sbjct: 24  HDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYV 83

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RYTE
Sbjct: 84  KCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRYTE 143

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT IP 
Sbjct: 144 CKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKIPP 203

Query: 194 HNVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           HN++EI  A    +++PE     ++E LLE + GPDFPT G ++  +  I ++YR GRG 
Sbjct: 204 HNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHG-LIVGQAGIQDAYRTGRGS 262

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            R+RA   VEE  RG   +VV+E+PYQV    L E+IAELI   ++  + DIRDES+   
Sbjct: 263 IRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSGRT 322

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R     +++ +++  + ++  F  NM  L    VP+ + L   ++ ++ H+
Sbjct: 323 GMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVD-GVPRTLNLAQFIRYYVEHQ 381

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTE 425
            EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     +           + E
Sbjct: 382 IEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIRLLDIDE 441

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  L  E   +  +L   ++Q   ++ E+ E+   
Sbjct: 442 VQATAILDMQLRRLAALERQRILDDLAKLEVEIADLKDILAKPERQRRIVSEELGEIVAK 501

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHS 537
           +        RRT              + +I +E + V I+  G+ +  K           
Sbjct: 502 WGD-----DRRTKIVPFDGE---VSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGG 553

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID 595
             +S    ++ D +       T D IL  +  G+ Y   A  L       +   +  L+ 
Sbjct: 554 KGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLA 613

Query: 596 LNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              ++ I       +      L++ +  G        E  +N   G   + +  E+++  
Sbjct: 614 FQPDEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDELVG 673

Query: 653 VVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
            V V   D + +V +N + + F+     +  M R   GV    +  G    +    + EG
Sbjct: 674 AVLVAPEDDLLLVSKNAQAIRFNATDEALRPMGRATSGVIGMRF-SGEDELLAVEVVREG 732

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           L  + +    Y +        +  RGG G L  K   R G  + +
Sbjct: 733 LDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGA 777



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 78/223 (34%), Gaps = 19/223 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           +        ++    +  P  V+ +  G ++  +    D      + A++ ++ D L  A
Sbjct: 615 QPDEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDELVGA 674

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           +     D +LL+S + +A    A +      G   +  + +  +   +++   V      
Sbjct: 675 VLVAPEDDLLLVSKNAQAIRFNATDEALRPMGRATSGVIGMRFSGEDELLAVEVVREGLD 734

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRK 669
           +LV ++ G A      E     R GK  L     E+   +   V +   D +  +  N  
Sbjct: 735 VLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPEDELFAITSNGG 794

Query: 670 LLIFSIDQIPEMSRGK-----GVRLQSYKDGGISDVICFKICE 707
           ++   +  +    R +     GV+L    DG     I     E
Sbjct: 795 VIRTPVKPVR---RTRDRNTMGVKLMDLPDGVTIVAIARNADE 834


>gi|330960545|gb|EGH60805.1| DNA gyrase subunit A [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 928

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/834 (30%), Positives = 412/834 (49%), Gaps = 104/834 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE++I++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEGLIKTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++  E   
Sbjct: 422 VEMVERAGADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +LNS  +    I  E+  ++  +  +     RRT   +   A        
Sbjct: 482 ILTQIGELIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +L+
Sbjct: 534 LITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLM 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----------- 612
            S+ GK Y L    +        G  +  L+ L+  + I T    D              
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEA 653

Query: 613 -------------------------------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                                           + + ++ G                G   
Sbjct: 654 LEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIA 713

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           L++   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    
Sbjct: 714 LELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLI 773

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLI-PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 6/168 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  SV L AL   EGD L  A        I+L S  GK       ++ +       ++ +
Sbjct: 705 RQRSVGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGM 764

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---- 649
             L   Q +++  + +   ++L  S +G       SE     R G+  + + S E+    
Sbjct: 765 R-LPEGQKLISMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRL 823

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +  V  + G+ + ++ +   L+   + ++  + R  +GV L       
Sbjct: 824 VGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTLIKLASDE 871


>gi|116750116|ref|YP_846803.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB]
 gi|116699180|gb|ABK18368.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB]
          Length = 813

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/747 (32%), Positives = 393/747 (52%), Gaps = 15/747 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++K +++   ++  YL YA+S I  RAIPD+RDG KPVHRRI +AM E+  DF   +KKS
Sbjct: 2   DLKTINIEDEIKLSYLDYAMSVIIGRAIPDVRDGLKPVHRRIFYAMHELRNDFNKPYKKS 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD +VYD+LVR+AQ F  RY L+ GQGNFG++DGD  AA RYTE R
Sbjct: 62  ARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRYQLVDGQGNFGSVDGDPPAAMRYTEVR 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++    ++ ++++ + F+  Y+    EPVV P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 122 MNRIGHEFMRDIEKETIPFQPNYDNTILEPVVLPARIPNLLLNGSSGIAVGMATNIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+C   LA++D+P+I++  L+ YI GPDFPT G  +     I ++Y  GRG  ++RAR
Sbjct: 182 LRELCAGLLAMLDDPDITVRDLMRYIPGPDFPTAG-FICGCVGIKDAYETGRGTIKMRAR 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VEE GR    +++TE+PYQV K+RL+E+IAEL+  K+I  ++DIRDES  +   V+  
Sbjct: 241 VEVEESGR-RNHLIITELPYQVNKARLLERIAELVKQKKIEGIQDIRDESDREGMRVVLT 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P ++   ++  + +E+ F + M  +   + P+V+ L G+L  +L  RR V+ RR
Sbjct: 300 LRQGDEPRVIENQLYKHTALESSFGVIMLAVVDNK-PEVLNLKGVLNNFLDFRRLVIIRR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAIL 432
           + + +   ++R  IL+GL  A  ++DE+I++IR    P       + RF  ++ Q  AIL
Sbjct: 359 TQYELAQAEKRAHILEGLKRALDHLDEVISLIRAAKTPPEAKQGLMERFEFSDVQAQAIL 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE  +I  E   ++ E E++  +L+S       I  EI+E+ + +      
Sbjct: 419 EMRLQRLTGLEREKIIEEYQEIIKEIERLRQILSSAALVDQVIREEIKELTDQYGDLRKT 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                          A  +  +       +  +     RS +      + +  +E D + 
Sbjct: 479 EILAEAGELCIEDLIAAEEMVVTISRAGYIKRTPLSVYRSQRRGGKGRTGMSTREEDLVT 538

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFV--- 607
               A T D +L+ +  G+ Y L    +        G+AI  L+ +  ++ I T      
Sbjct: 539 SLFTASTHDYLLVFTNRGQVYWLKVYEIPEVGPSALGKAIVNLLPVQKDERIQTVLPVKE 598

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           +      ++ +  G     + S        G   + +  ++++  V    G H + ++  
Sbjct: 599 FKEGFFAVMATRNGVIKKTDLSAYSNPRSTGIRAIVLDDDDELISVCVTDGSHDLFLMSR 658

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K +  +  +   + R  +GVR       G   V    I EG   +    + + +  N 
Sbjct: 659 AGKSIRVNEREFRPLGRVSRGVRGMKL--DGSRMVGMDVIEEGKAILVITEKGFGKRTNA 716

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  RGG G L  +   R+G  + 
Sbjct: 717 EEYRCQSRGGKGVLNIRVTERNGSVVG 743



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 66/188 (35%), Gaps = 7/188 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           VI            S  + A+   + D L        +  + L+S  GK+  +       
Sbjct: 613 VIKKTDLSAYSNPRSTGIRAIVLDDDDELISVCVTDGSHDLFLMSRAGKS--IRVNEREF 670

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 +  +         +V   V +    +LV++ KG        E    +R GK  L
Sbjct: 671 RPLGRVSRGVRGMKLDGSRMVGMDVIEEGKAILVITEKGFGKRTNAEEYRCQSRGGKGVL 730

Query: 643 KVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            +   E+   +    +V  D  + ++ ++ +L+   + QI  + R  +GV+L +  +G  
Sbjct: 731 NIRVTERNGSVVGFRQVGEDEQILMITDHGRLIRMPVAQISRIGRVTQGVKLMNLNEGEK 790

Query: 698 SDVICFKI 705
              +    
Sbjct: 791 VVDVAVLP 798


>gi|290889526|ref|ZP_06552616.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429]
 gi|290480724|gb|EFD89358.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429]
          Length = 866

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/765 (30%), Positives = 390/765 (50%), Gaps = 18/765 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +   N+N   +  +K   L   +   +L+YA+S I  RA+PD+RDG KPVHRRI+  
Sbjct: 1   MADE--ENNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFG 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+      KKSARIVG+V+GK HPHGD ++Y+SLVR+AQPF  RYPL+ G GNFG+
Sbjct: 59  MNELGVTPDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEAR++++A  +L+ +++  VDF+ +Y+ ++ EPVV PS+FPNLL NG 
Sbjct: 119 VDGDPAAAMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGA 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP+HN++E+  A   L+ NP+ ++  L+E + GPDFPTG  IV  +  I 
Sbjct: 179 QGIAVGMATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGA-IVMGKSGIR 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   VR++  +E    G   I V+E+PY V K++LIE+I EL++ K++  +  
Sbjct: 238 RAYETGRGSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITA 297

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES ++   +     R  + ++++ +++  + ++T F  NM  ++    P+ M L  I
Sbjct: 298 IRDESDQNGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINH-GKPETMSLKQI 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L  +L H+RE++ RR+ F ++    R  IL+GL IA  +ID II +IR+ +     K  +
Sbjct: 357 LVAYLEHQREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNEL 416

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++R+ L++ Q  AIL++RL  L  LE  +I++E  +LL   E    +L   ++    I  
Sbjct: 417 INRYQLSDKQAQAILDMRLVRLTGLERGKIETEYTDLLKSIEDFKDILAKPERIDQIIYQ 476

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSH 536
           E+ ++   F        +      +   D    ++ +I       +   +     +    
Sbjct: 477 ELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVLISLTHKGYIKRLSTSEFHTQNRG 536

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  ++  + D ++  +   T D +L  S  GK Y +    +       +   +  L+
Sbjct: 537 GRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAKGIPVINLL 596

Query: 595 DLNHNQDIVTAFVYDST-----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            L+  + +                L   +  G       SE     + G   + +  ++ 
Sbjct: 597 GLDAGERVQAVINVRGDAATSKDSLFFTTKLGTVKRTAVSEFTNIRQSGLRAINLRDDDS 656

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +   +   + F+   +  M R   GVR  + +D          I  
Sbjct: 657 LISVLLTNGKQNIVIASHSGYAVSFAESDVRAMGRTASGVRGMNLRDKDYVVGADLLIP- 715

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           G   +    + Y +        +  RGG G        ++G    
Sbjct: 716 GDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKNGPLAG 760



 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 80/232 (34%), Gaps = 8/232 (3%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           D G R      V      +        +  TV  +      +++     L A++ ++ DS
Sbjct: 599 DAGERVQAVINVRGDAATSKDSLFFTTKLGTVKRTAVSEFTNIR--QSGLRAINLRDDDS 656

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L   L  +    I++ S  G A +  A + +   G   +    ++L     +V A +   
Sbjct: 657 LISVLLTNGKQNIVIASHSGYAVSF-AESDVRAMGRTASGVRGMNLRDKDYVVGADLLIP 715

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGE 666
              +L+++ KG        E     R GK +    +   +     L V    + + +  +
Sbjct: 716 GDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKNGPLAGLAVVSGDEDIMITTD 775

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           +  ++ F+   +    R   GV +   ++G     +     E    I +  +
Sbjct: 776 SGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEKEEDEEIPATDQ 827


>gi|312872702|ref|ZP_07732767.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|311091744|gb|EFQ50123.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1]
          Length = 815

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/765 (29%), Positives = 400/765 (52%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQN--QDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+++L+  I GPDFPTGG I+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGG-IIMGRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +     P V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVD-GSPHVLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR           +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISD--SEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 LHF--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                      +  D +   ++ +T D +L  +  GK Y+  +  +       +   I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-M 650
           I L  N  +V + + D   ++LV+S KG       SE    +R   G     V+ +   +
Sbjct: 692 IKLRANDYVVGSSIVDDHSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPL 751

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKICE 707
             V  V G + + ++ +   ++   +D + +  R   GVRL     G  ++ +   K  +
Sbjct: 752 VGVTVVDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811

Query: 708 GLTW 711
               
Sbjct: 812 NSEI 815


>gi|119476907|ref|ZP_01617188.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143]
 gi|119449714|gb|EAW30951.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143]
          Length = 858

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/801 (31%), Positives = 410/801 (51%), Gaps = 64/801 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+        +  V++   L++ YL Y++S I  RA+PD+RDG KPVHRR++ AMSE+ 
Sbjct: 1   MSDLTNAPSNQILPVNIEDELKQSYLDYSMSVIVGRALPDVRDGLKPVHRRVLFAMSELN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  ++KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDS
Sbjct: 61  NDWNKSYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQHFSLRYMLVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM +++  IL  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEIRMRKISHEILADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLINGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A LALIDNP+I+I++L+E I GPDFPT   I+  R  IV++YR 
Sbjct: 181 GMATNIPPHNLNEVVTACLALIDNPDITIDELIEIIPGPDFPTAA-IINGRAGIVQAYRT 239

Query: 246 GRGGFRVRARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           G+G   +R+R  VE     G   I+++E+PYQV K+RLIEKIAEL+  K+I  + ++RDE
Sbjct: 240 GKGRIYIRSRAVVETNEKTGKDTIIISELPYQVNKARLIEKIAELVKEKKIEGIAELRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   V+    R    ++ + +++  + +E  F +N+  L     P+++ L  +L+ +
Sbjct: 300 SDKDGLRVVIEMKRGEMGEVCLNNLYSQTQLENVFGINIVALVD-GQPRLLNLKQLLEYF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ + ++    R  +L+GL +A  NID +I +I++ D             
Sbjct: 359 VRHRREVVTRRTVYLLRRARERGHLLEGLAVAISNIDRMIELIKSSDTTAEAKEKLSAQG 418

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                        +  ++ L+  QV AIL++RL+ L  LE  ++
Sbjct: 419 WELGDVSQMLARAGESACRPDDLPENYGYIDGKYHLSPAQVQAILDMRLQKLTGLEHEKL 478

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E    L E  +  S+L    +    I  E+  +   +        RR+   E   + +
Sbjct: 479 LKEYQEKLEEIAEYLSILGDAVKLMTVIREELDAIVNEYGDE-----RRSEIIE---STR 530

Query: 508 ATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E   V IS+ G+         ++ +   +  SA   K+ D ++  + A T
Sbjct: 531 DLTAEDLITEEDRVVTISHGGYAKTQSLSDYQAQRRGGMGKSATAVKDEDFVEHLMIAST 590

Query: 560 TDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  S  GK Y L   ++   S    G  +  L+ L  ++ I +      Y     +
Sbjct: 591 HDTILCFSNVGKVYWLKVFHIPLASRNARGRPMVNLLPLGEDERITSILPVKEYTEGHYI 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIF 673
            + ++ G     E +        G   L++   + +       G   V +   + K + F
Sbjct: 651 FMATANGTVKKTELTNFARQRSVGLRALELEEGDVLIGTAVTNGTCDVMLFSSSGKAVRF 710

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           + + +  M R  KGVR     DG    +      +G   +  +   Y +           
Sbjct: 711 NENDVRAMGRTAKGVRGIRMADGQ-KMISLLVPKDGGRMLSVSENGYGKRSEFAEFATKG 769

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           RG  G +  +   R+G+ + +
Sbjct: 770 RGNKGMIFMQASERNGEIIGA 790



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 105/312 (33%), Gaps = 20/312 (6%)

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
            A  ++    +         +   V     +    +    +  +       +   +    
Sbjct: 552 YAKTQSLSDYQAQRRGGMGKSATAVKDEDFVEHLMIASTHDTILCFSNVGKVYWLKVFHI 611

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            L S   +   +   +               R T+   V    +       +     TV 
Sbjct: 612 PLASRNARGRPMVNLL---------PLGEDERITSILPVKEYTEGHYI--FMATANGTVK 660

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
            +        +  SV L AL  +EGD L      + T  ++L S+ GKA      ++ + 
Sbjct: 661 KTELTNFARQR--SVGLRALELEEGDVLIGTAVTNGTCDVMLFSSSGKAVRFNENDVRAM 718

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTF 641
               + ++  I +   Q +++  V     ++L VS  G     E +E     R  KG  F
Sbjct: 719 GRTAKGVRG-IRMADGQKMISLLVPKDGGRMLSVSENGYGKRSEFAEFATKGRGNKGMIF 777

Query: 642 LKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-I 697
           ++ S    E +  V    GD + ++ +   ++    D+I  + R  +GVR+   K+G  +
Sbjct: 778 MQASERNGEIIGAVQVFDGDELMMISDQGTMVRTRTDEISVLGRNTQGVRVIRLKEGEHV 837

Query: 698 SDVICFKICEGL 709
             V   +  E +
Sbjct: 838 VGVERIEEPEEI 849



 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 45/128 (35%), Gaps = 3/128 (2%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             +  +   +G  +   L      R+L +S +G           +     + +  +    
Sbjct: 723 KGVRGIRMADGQKMISLLVPKDGGRMLSVSENGYGKRSEFAEFATKGRGNKGMIFMQASE 782

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVK 655
            N +I+ A       +L+++S +G        EI    R   G   +++   E +  V +
Sbjct: 783 RNGEIIGAVQVFDGDELMMISDQGTMVRTRTDEISVLGRNTQGVRVIRLKEGEHVVGVER 842

Query: 656 VTG-DHVA 662
           +   + +A
Sbjct: 843 IEEPEEIA 850


>gi|315925616|ref|ZP_07921826.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621157|gb|EFV01128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 832

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 407/760 (53%), Gaps = 16/760 (2%)

Query: 6   ISNSNTL--VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +  + T+  V  N++ V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM +
Sbjct: 1   MDENETMLTVAHNLRNVKIEDEMKNCYIDYAMSVIIGRALPDVRDGLKPVHRRILYAMHQ 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MG+     F+KSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY  ++GQGNFG++DG
Sbjct: 61  MGMTPDKPFRKSARIVGEVLGKYHPHGDSSVYDAMVRMAQDFSTRYMTVNGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEARM++++  +L+ ++++ VDF D ++  + EPVV PS+FP+LL NG+ GI
Sbjct: 121 DGAAAMRYTEARMSRISLEMLRDINKETVDFMDNFDGSEQEPVVLPSRFPHLLVNGSQGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  +A ID+P+IS++ L+ +I GPDFPT G+I+  +  I E+Y
Sbjct: 181 AVGMATNIPPHNLGEVIDGTIAYIDDPDISVDDLMTHIKGPDFPTAGVIL-GKSGIREAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  ++R++  V+ + +G   IV++EIPY V K++LI+KIAEL+  KR+  + DIRD
Sbjct: 240 ETGRGRIKIRSKVAVKNMTKGKKQIVISEIPYMVNKAKLIQKIAELVKDKRVEGITDIRD 299

Query: 304 ESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           E+  +    ++    R  +  +++  ++  + ++  + +    L     P+V+ L  IL 
Sbjct: 300 ETDLKHGIRIVVELKRDTNATIVLNQLYKHTQLQDTYGVINLALVD-GQPKVLSLKQILH 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            ++AH++E++ RR+ F ++  + R  IL+G  IA  NIDE+I IIR        K  ++ 
Sbjct: 359 YYVAHQKEIIVRRTKFDLKKAEARAHILEGYRIALDNIDEVIQIIRESRDAKIAKTHLMD 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+LT+ Q  AIL++RL+ L  LE  +I++E   L+ +  +  ++L   K     I  E+
Sbjct: 419 RFALTDIQAQAILDMRLQRLTGLEREKIETEYAELMQKIAEYKAILADEKLVLGIIKDEL 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E+K+ +                        +  +       V        R+       
Sbjct: 479 TEIKDKYGDDRRTSFDIDVEDFDVEDLIKEEEVVVTMTHVGYVKRIAADTYRAQNRGGKG 538

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           +SAL  +E D ++      T D +L  +  GK Y L A  +        G AI  ++ L+
Sbjct: 539 ISALSTRENDFIEHIFTTSTHDDLLFFTNKGKYYRLKAYEIPVGGRTSRGTAIVNILQLD 598

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T      +++    ++ +  G       ++  ++ + G   + +   +++  V 
Sbjct: 599 PDESITTMIQVKTFEADKYFVMATRHGLIKKTAMTDYESSRKNGINGINLRDGDELIKVQ 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
                + V +       + F +  +    R   GVR    +       +   I +    +
Sbjct: 659 ISDDTEDVVMGTHLGYAIRFKVRDVNATGRMSMGVRGIGLRADDHVVGMDLLIADN-NVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             A + Y +  +     + KRGG G    K   ++G  + 
Sbjct: 718 CVAEKGYGKRTSADQYRVQKRGGKGIQTYKCTKKTGNLVG 757



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 65/188 (34%), Gaps = 6/188 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                    S    ++ ++ ++GD L     +  T+ +++ +  G A      ++ +   
Sbjct: 629 KTAMTDYESSRKNGINGINLRDGDELIKVQISDDTEDVVMGTHLGYAIRFKVRDVNATGR 688

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
               ++  I L  +  +V   +  +   +L V+ KG        +     R GK      
Sbjct: 689 MSMGVRG-IGLRADDHVVGMDLLIADNNVLCVAEKGYGKRTSADQYRVQKRGGKGIQTYK 747

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
               +   +   V   G  + ++  +  ++    D I ++ R  +GVRL   K       
Sbjct: 748 CTKKTGNLVGFSVLEDGGEIMMINNDGIVIKLKGDDISQIGRSTQGVRLMKLKGDERIAT 807

Query: 701 ICFKICEG 708
           IC    E 
Sbjct: 808 ICKVQNEE 815



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 55/154 (35%), Gaps = 10/154 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
                V+ ++ G+    K   V         +  +  +  D +         + +L ++ 
Sbjct: 662 DTEDVVMGTHLGYAIRFKVRDVNATGRMSMGVRGIGLRADDHVVGMDLLIADNNVLCVAE 721

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            G      A      +  G+ IQ         ++V   V +   +++++++ G    ++ 
Sbjct: 722 KGYGKRTSADQYRVQKRGGKGIQTYKCTKKTGNLVGFSVLEDGGEIMMINNDGIVIKLKG 781

Query: 629 SEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
            +I    R   G   +K+  +E++  + KV  + 
Sbjct: 782 DDISQIGRSTQGVRLMKLKGDERIATICKVQNEE 815


>gi|120435858|ref|YP_861544.1| DNA gyrase subunit A [Gramella forsetii KT0803]
 gi|117578008|emb|CAL66477.1| DNA gyrase subunit A [Gramella forsetii KT0803]
          Length = 843

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/762 (31%), Positives = 407/762 (53%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+    A+KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRAYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKFHPHGDSSVYDTMVRMAQHWSMRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++  SEPVV P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEDMLADLDKETVDTQLNFDDSLSEPVVMPTRVPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A I+N +I I++L++YI  PDFPTGG I+   + + E+++ GRG   +RA
Sbjct: 185 NLTEVIDGTIAYIENHDIDIDELIQYIKAPDFPTGG-IIYGYDGVREAFKTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE+G G   +VVTEIPYQV K+ +I+K A+L+  K+I  +  IRDES  +   V++
Sbjct: 244 KSHMEEIG-GREYLVVTEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRVVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  + +++ F +N   L     P+++ L  ++  ++ HR +V+ R
Sbjct: 303 QLKRDAIPNIVLNTLFKHTALQSSFSVNNIALV-NGRPEMLNLKDLIYHFVEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R+ + ++    R  IL+GL+IA  NIDE+IA+IR     +        RF L+E Q  AI
Sbjct: 362 RTEYELRKAKERAHILEGLIIASDNIDEVIALIRASSNAEEARNKLIERFELSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++ E D +L   E ++ +L   +++   I  E+ EVKE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRGEYDEILNTIEDLEVILARKERRMQVIKDELLEVKEKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+       A      + MI  E + + IS+ G+I+              V     
Sbjct: 480 ---RRSQI---EYAGGDLSIEDMIPDEKVVITISHAGYIKRTSLSEYKTQNRGGVGQKGS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
           + +  D L+          +L  + +GK Y +    +  G    +  AIQ LI+++    
Sbjct: 534 NTRNEDFLEYLFVGTNHQYMLFFTQNGKCYWMRVYEIPEGSKASKGRAIQNLINIDPEDK 593

Query: 602 IVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +                   +++ + KG        +       G   + +   +++   
Sbjct: 594 VNAFICTQDLKDEKYVNDHFVIMATKKGQVKKTRLEKYSRPRTNGINAITIKEGDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
              TG+  V +   + K + F   +   M R   GVR  +  D     V    + +    
Sbjct: 654 KLTTGNSQVMLGLRSGKAIRFEESKTRPMGRNASGVRGITLADDKDEVVGMIAVNDFESD 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +   Y +  +     +  RGG G        ++G+ ++
Sbjct: 714 ILVVSENGYGKRSSLEDYRITNRGGKGVKTISVTEKTGQLVA 755



 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 102/327 (31%), Gaps = 16/327 (4%)

Query: 391 KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
           + ++I   +   I     +E K +         +  + +  L           +Y +   
Sbjct: 500 EKVVITISHAGYIKRTSLSEYKTQNRGGVGQKGSNTRNEDFLEYLFVG--TNHQYMLFFT 557

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
            +         +    S   +   I   I           D         ++        
Sbjct: 558 QNGKCYWMRVYEIPEGSKASKGRAIQNLINI------DPEDKVNAFICTQDLKDEKYVND 611

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              ++  +   V  +        +++   ++A+  KEGD L  A       +++L    G
Sbjct: 612 HFVIMATKKGQVKKTRLEKYSRPRTN--GINAITIKEGDELLEAKLTTGNSQVMLGLRSG 669

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEES 629
           KA             +   ++ +   +   ++V     +     +LVVS  G        
Sbjct: 670 KAIRFEESKTRPMGRNASGVRGITLADDKDEVVGMIAVNDFESDILVVSENGYGKRSSLE 729

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG- 684
           +     R GK    +S  EK   +  +  V+  D + ++ ++  ++  +++ +  M R  
Sbjct: 730 DYRITNRGGKGVKTISVTEKTGQLVAIKNVSDIDDLMIINKSGIVIRMAVEDLRVMGRAT 789

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTW 711
           +GVRL + K       +   + +    
Sbjct: 790 QGVRLINLKGNDAIAAVAKVLHDEDDL 816


>gi|283852479|ref|ZP_06369747.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B]
 gi|283572087|gb|EFC20079.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B]
          Length = 816

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/747 (31%), Positives = 391/747 (52%), Gaps = 13/747 (1%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + +++   L++ YL Y+LS I  RAIPD+RDG KPVHRRI+ AM E+   +   +KKSAR
Sbjct: 7   EQINIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELSNSYNRPYKKSAR 66

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGDQSVYD+LVR+AQ F  R P++ GQGNFG+IDGD+AAA RYTE RM+
Sbjct: 67  VVGDVIGKYHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A   L  ++++ V FR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 127 RLAGEFLADIEKETVGFRPNYDNSLQEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLG 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C+  L  +DNP   I++++  I GPDFPTG  I   R  + ++Y  GRG  ++R R  
Sbjct: 187 ELCDGLLHQLDNPGCDIKEIITLIHGPDFPTGASIYGGR-GLYDAYTTGRGSIKIRGRVE 245

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           VEE  +    +V+ EIPY + KS L+EKIA LI   RI  + D+RDES      ++    
Sbjct: 246 VEERKKDYQSLVIREIPYALNKSSLVEKIAALINDHRIEGVSDLRDESDRKGIRIVLDLK 305

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           + +  D++  +++  + +ET F +   ++     P  + +  +L+ +LAHRREV+ RR++
Sbjct: 306 KGVIADIITNALYKYTPLETSFGI-NMMVVADNRPATLNIQQMLEHFLAHRREVILRRTA 364

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNL 434
           + ++  + R  IL+GL IA  NIDE++AIIR      + +  ++ RF L+E Q  AIL++
Sbjct: 365 YDLRKSEERAHILEGLRIALDNIDEVVAIIRASKNAVEARENLMERFGLSERQAQAILDM 424

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE  ++  E + L+   E + S+LN+ +     I  EI+E+++ ++       
Sbjct: 425 RLQRLTNLERQKLIDEYNELIRLIEYLRSILNNDEVLRGVIRDEIKEIQDRYATPRKTEV 484

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
                              +       +  +     +  K     ++ +     D ++  
Sbjct: 485 LEDLEGINILDLIPDEDVVITLSRRGYIKRTKIDNYQQQKRGGKGVAGVSTSADDFVQSF 544

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YD 609
                  ++LL +  G+ + LP   +  G+   +   I  L+ ++  + + TA     + 
Sbjct: 545 CATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATALAIREFS 604

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
           S    L V+ +G                G   + +   +++  V ++  +  V +  +  
Sbjct: 605 SERYFLFVTKRGMVKRSCTELYKNCRSTGIIAVSLKEGDELLTVKEIDDNAEVLLATQQG 664

Query: 669 KLLIFSIDQIPEMSRG-KGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
               F I  I    RG  GV+  + K    ++  +          +  +   Y +  +  
Sbjct: 665 LSNRFHISGIRPTGRGAAGVKGIALKGADRVAAGVIMTGNGRNEVLTVSANGYGKRTSIE 724

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              L  RGG G +  +  P++G+ + +
Sbjct: 725 HYPLRNRGGSGVINMRVTPKTGQVIGA 751



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDH 660
               +   ++L VS+ G              R G   + +     + + +  V+ +  D 
Sbjct: 700 IMTGNGRNEVLTVSANGYGKRTSIEHYPLRNRGGSGVINMRVTPKTGQVIGAVMVLPEDD 759

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGIS 698
           + ++    K++  S+  I  + R  +GV L   ++    
Sbjct: 760 LLLLTSANKIIRLSVSGISSVGRATQGVMLVRMENDDTV 798


>gi|152993202|ref|YP_001358923.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1]
 gi|151425063|dbj|BAF72566.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1]
          Length = 840

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/759 (32%), Positives = 392/759 (51%), Gaps = 16/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+       NV+ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++ 
Sbjct: 1   MSDLFD-DNHNVEEVLIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLS 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L   + +KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  + PL+ GQGNFG++DGD+
Sbjct: 60  LSHRSPYKKSARIVGDVIGKYHPHGDNSVYDALVRMAQDFSMQAPLVDGQGNFGSVDGDN 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT++AE +L  +++D VDF   Y++  SEP V PS+ PNLL NG+SGIAV
Sbjct: 120 AAAMRYTEARMTKIAEELLSDLEKDTVDFVPNYDDSMSEPDVLPSRVPNLLLNGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +A +  IDNPE SIE +++ + GPDFPTGG I+  R+ I ++Y  
Sbjct: 180 GMATNIPPHRLNELIDALVVRIDNPEASIEDMMKIVQGPDFPTGG-IIFGRKGITDAYTT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  + E       I++ E+P+QV KSRLIE IA+L+  K I  + +IRDES
Sbjct: 239 GRGRIKVRAKTHI-EQKGNKEIIIIDELPFQVNKSRLIENIAQLVRDKHIEGISEIRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++ ++F  + M+  F + + +    + P+V  L  +   +L
Sbjct: 298 DREGIRVVMELKRDAMSEIVLNNLFKSTQMQVTFGI-IMLAIHNKEPKVFNLMELFDLFL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ V+ RR+ F ++    R  IL+GL IA  NIDE+I IIR        +  ++SRFS
Sbjct: 357 NHRKTVIIRRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASSDDVEARENLMSRFS 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RLR L  LE  +I++EL  LL     ++ +L S ++    I  E+ E+
Sbjct: 417 LSEIQAKAILEMRLRRLTGLEIEKIENELAELLKTIAYLEGILKSEEKINQIIREELIEI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +                           +       +                  +A
Sbjct: 477 GEKYRTPRRTEIVDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPVKLYEKQHRGGKGKTA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
           +   + D ++    ++T D ++ ++  G+ Y L    +        G+A+  LI+L  ++
Sbjct: 537 VTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYRIPEGSRTAKGKAVVNLINLQPDE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
            I+       +     L+  +  G       SE       G   + +   +++     V 
Sbjct: 597 KIMAIIPTTDFSEEKGLVFFTRNGIVKRTNLSEYSNIRSNGVRAINLDENDELVEAKIVK 656

Query: 657 -TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWID 713
                + V  +    + F ++   E+ R  +GV    +K DG           E    + 
Sbjct: 657 PETKWLFVATKKGLCIRFKVEDAREIGRVSRGVTAIKFKIDGDYVCGAATLESEEDEILM 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +   +           R G G +  K   ++G  + 
Sbjct: 717 LSEKGLGKRTTASEYREQNRAGKGVISMKLTSKTGDVVG 755


>gi|13357638|ref|NP_077912.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170761893|ref|YP_001752161.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171920319|ref|ZP_02931663.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508667|ref|ZP_02958161.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701885|ref|ZP_02971542.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|11386848|sp|Q9PR63|GYRA_UREPA RecName: Full=DNA gyrase subunit A
 gi|11270992|pir||F82937 DNA topoisomerase chain A, DNA gyrase A subunit UU082 [imported] -
           Ureaplasma urealyticum
 gi|6899033|gb|AAF30487.1|AE002107_11 DNA topoisomerase chain A - DNA gyrase A subunit [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827470|gb|ACA32732.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902737|gb|EDT49026.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182676135|gb|EDT88040.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701192|gb|EDU19474.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 840

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/753 (34%), Positives = 407/753 (54%), Gaps = 27/753 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K  S+   +E  +L Y++S I  RA+PD+RDGFKPVHRR + A  E G+     +KKSA
Sbjct: 25  IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGDQ+VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR+
Sbjct: 85  RWVGDVIGKYHPHGDQAVYQTIVRMAQDFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +D++ VDF   Y+  + EP V PS FPNLL NGT+GIAVGMAT+IP HN+
Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A  A   N  ++I +++EY+ GPDFPTG  I      I++ +  GRG   +R+++
Sbjct: 205 TEVCQAIKAYAKNHNVTISEIMEYLKGPDFPTGAEIY-GDSGIIKYFNTGRGSVTIRSKY 263

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E++G+G   IVVTEIPY V K+ LIEKI EL+  K+I  + D+RDES+ D   ++   
Sbjct: 264 EIEDIGQGRVAIVVTEIPYMVNKANLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEV 323

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R + P++L+  +F  + ++T F +N   L    VP V+ +  ++K +  H+ E+L RR+
Sbjct: 324 KRDVIPEVLLNKLFKTTPLQTNFSVNNLALV-NGVPMVLNIKEMIKYYFEHQIEILVRRT 382

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILN 433
           +F ++    R+ I++GL+IA  NIDE+I II+           ++ RF LTE Q  AIL 
Sbjct: 383 NFDLKKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKSLIQRFDLTELQTKAILE 442

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+L  L   ++K E ++L+   + ++ +LN+  +Q N I   +  + E F       
Sbjct: 443 MRLRALTGLNIDKLKKEYEDLILVIKDLEDVLNNYNRQVNIICENLDYLIEKFGDE---- 498

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT    +         + +I  E I V +S RG+ +          +   V +  L  
Sbjct: 499 -RRTEI--MYGVSSHIDDEDLIPVEDIVVTMSKRGYFKRLPIDTYKNQRRGGVGVQGLKT 555

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
            E D ++  L A+T   +L  S  G+ Y L    +  G    +       + +  ++ I+
Sbjct: 556 YEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSKGIPAINFLPIEKSESIL 615

Query: 604 TAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
           T    D      L   +SKG       S+  +    GK  + +   +K+  V++  G D 
Sbjct: 616 TILPIDNYDQGSLFFTTSKGIIKRANLSDFESIRANGKIAITLKDGDKLFSVMQTLGNDE 675

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +   N  ++ F+ +   EM R   GV+  + ++             G   +    +  
Sbjct: 676 VFIGASNGNVIRFNENDAREMGRIATGVKGINLENDEYVVGTGLS-SHGEYVLAVGSKGL 734

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +     L KRG  G    K   ++G  +S
Sbjct: 735 GKLTDINDYRLTKRGAKGVNTLKVNDKTGNLVS 767



 Score = 74.8 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 115/358 (32%), Gaps = 20/358 (5%)

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           E +    + ++  I   ++ L          + +  +  + D    + V    +T ++  
Sbjct: 471 EDVLNNYNRQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVVTMSKRG 530

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
               L + + +      +  +      + +    L+ +        +  +  V  +    
Sbjct: 531 YFKRLPIDTYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSD-LGRVYRLRGHE 589

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----------- 538
             LG R++              ++++   PI        +  + K               
Sbjct: 590 VPLGSRQSKGIPAINFLPIEKSESILTILPIDNYDQGSLFFTTSKGIIKRANLSDFESIR 649

Query: 539 --DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
                A+  K+GD L   +     D + + +++G        +          +   I+L
Sbjct: 650 ANGKIAITLKDGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREMGRIATGV-KGINL 708

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLV 653
            +++ +V   +      +L V SKG   + + ++     R  K    +   +K   +  +
Sbjct: 709 ENDEYVVGTGLSSHGEYVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVNDKTGNLVSI 768

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             V   +   ++  + K++  SI  I  + R   GV+L S ++      I     E +
Sbjct: 769 KVVNREEEALIITTSGKVIRLSIKDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEI 826


>gi|239904643|ref|YP_002951381.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1]
 gi|239794506|dbj|BAH73495.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1]
          Length = 813

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/745 (31%), Positives = 388/745 (52%), Gaps = 13/745 (1%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +   L++ YL Y+LS I  RAIPD+RDG KPVHRRI++AM ++   +   +KKSAR+V
Sbjct: 5   IQIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLSNTYNRPYKKSARVV 64

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQ F  R  ++ GQGNFG+IDGD+AAA RYTE RM+++
Sbjct: 65  GDVIGKYHPHGDQSVYDALVRMAQDFSMRDAIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L  ++++ VDFR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 125 AGEFLADIEKETVDFRPNYDNSLEEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+  L L+D P   +  ++  + GPDFPTG  I   +  + E+Y  GRG  ++R R  VE
Sbjct: 185 CDGLLHLLDTPSCPVTDIIGLVKGPDFPTGAAIYGGK-GLTEAYTTGRGTIKIRGRAEVE 243

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E  +    +V+ EIPY + KS L+EKIA LI   RI  + D+RDES      ++    + 
Sbjct: 244 ERKKDYVSVVIREIPYALNKSSLVEKIAALINDGRIEGVSDLRDESDRKGIRIVLDLKKG 303

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           + PD+++ +++  + +ET F +   ++     P ++ +  +L+ +L HRR+V+ RR+ F 
Sbjct: 304 VIPDIVINALYKYTPLETSFGI-NMLVVADNRPALLNIKQVLEHFLTHRRDVILRRTRFD 362

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRL 436
           ++  + R  IL+GL IA  NIDE+++IIR      + +  ++ RF L+E Q  AIL++RL
Sbjct: 363 LRKSEERAHILEGLRIALDNIDEVVSIIRASKNAVEARERLMERFGLSERQAQAILDMRL 422

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  ++  E + L+   E + S+L + +     I  EI+E+++ ++         
Sbjct: 423 QRLTNLERQKLIDEYNELIKLIEYLRSILENDEVLRGVIRDEIKEIQDRYATPRKTEILE 482

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
                            +       +  +     +  K     ++ +     D ++    
Sbjct: 483 DLEGINILDLIPDEDVVITLSRRGYIKRTKIDNYQQQKRGGKGIAGVATAGDDFVQSFCA 542

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDST 611
                ++LL +  G+ + LP   +  G+   +   I  L+ ++  + + TA     +   
Sbjct: 543 TTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATALSIREFSEE 602

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKL 670
              L V+ KG                G   + +   +++  V ++  +  V +  +    
Sbjct: 603 RYFLFVTRKGMVKRTCTDLYKNCRSTGIIAVGLKENDELLTVKEIDDETEVLLATQQGLS 662

Query: 671 LIFSIDQIPEMSRG-KGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
             F I  +    RG  GV+  + K +  ++  +          +  +   Y +  +    
Sbjct: 663 NRFHISGVRPTGRGAAGVKGIALKGNDRVAAGVVITSVSRSEVLTVSANGYGKRTSIEHY 722

Query: 729 WLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  RGG G +  +  P++G+ + +
Sbjct: 723 PIRNRGGSGVINMRVTPKTGQVIGA 747



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 5/104 (4%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKV-TGDHVAVVGEN 667
            ++L VS+ G              R G   + +       ++   V V   D + ++   
Sbjct: 703 SEVLTVSANGYGKRTSIEHYPIRNRGGSGVINMRVTPKTGQVIGAVMVGDDDELLLLTSA 762

Query: 668 RKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT 710
            K++  S+  I  + R  +GV L    +              L 
Sbjct: 763 NKIIRLSVSGISSVGRATQGVMLVRMDENDTVMGFDLVDPSDLD 806


>gi|254361818|ref|ZP_04977953.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia
           haemolytica PHL213]
 gi|153093353|gb|EDN74349.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia
           haemolytica PHL213]
          Length = 898

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/821 (31%), Positives = 386/821 (47%), Gaps = 81/821 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +  
Sbjct: 2   SELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I+N +IS+E+L+ YI GPDFPTG  I+  R+ I E+YR GRG  
Sbjct: 182 IPPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGA-IINGRKGIEEAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I D S +   
Sbjct: 241 YVRAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRRE
Sbjct: 301 SIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALD-NGQPKVLNLRQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IR     +                
Sbjct: 360 VVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V    + L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +L S ++    I  E+  VK  F+          +         A     
Sbjct: 480 LLTEIGELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+   +  M R
Sbjct: 660 KVSLDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAMGR 719

Query: 684 -GKGVRLQSYK------------------------------DGGISDVICFKICEGLTWI 712
              GVR                                   D      +     EG   +
Sbjct: 720 TATGVRGIKLSTTEISSEEIEEAEIIETDNEEAEDSSSVSLDKDRVVSLVIPRTEGD-IL 778

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 Y +        +  R   G +  K   R+GK +++
Sbjct: 779 TVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAA 819



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 47/138 (34%), Gaps = 8/138 (5%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLV 653
               +V+  +  +   +L V+  G       SE    +R  K  + +   E+    +  V
Sbjct: 761 DKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAAV 820

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKICEGL 709
                D + ++ +   L+   + ++  + R  +GVR+    +         +C    +  
Sbjct: 821 QVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPEDDEN 880

Query: 710 TWIDSAGRSYNRSENDLL 727
             +D+   +     +   
Sbjct: 881 ESLDALENAETAETSTEE 898


>gi|312873306|ref|ZP_07733361.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|325912221|ref|ZP_08174618.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D]
 gi|311091186|gb|EFQ49575.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|325475880|gb|EGC79049.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D]
          Length = 815

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/765 (29%), Positives = 400/765 (52%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQN--QDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+++L+  I GPDFPTGG I+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGG-IIMGRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +     P V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVD-GSPHVLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR           +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISD--SEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 LHF--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                      +  D +   ++ +T D +L  +  GK Y+  +  +       +   I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-M 650
           I L  N  +V + + D   ++LV+S KG       SE    +R   G     V+ +   +
Sbjct: 692 IKLRANDYVVGSSIVDDHSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPL 751

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKICE 707
             V  V G + + ++ +   ++   +D + +  R   GVRL     G  ++ +   K  +
Sbjct: 752 VGVTVVDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811

Query: 708 GLTW 711
               
Sbjct: 812 NSEI 815


>gi|57233707|ref|YP_182324.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195]
 gi|57224155|gb|AAW39212.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195]
          Length = 809

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/755 (32%), Positives = 394/755 (52%), Gaps = 18/755 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V  N + +++   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM+++G+     
Sbjct: 1   MVTGNTRPINIEEEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVYD++VR+AQPF  RYPL+ GQGNFG++D D  AA RY
Sbjct: 61  YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ Q+AE +L  +D++ VDF   ++    EP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 121 TEARLAQIAEQLLTDIDKNTVDFMPNFDASLEEPTVLPARIPNLLMNGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A   LIDNP+  ++ L++++ GPDFPTGG I+   + I  +Y  G+G   
Sbjct: 181 PPHNLAELCQAICYLIDNPDCGVDDLMQFVSGPDFPTGGTIL-GTDGIKSAYATGKGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           ++A+  + EV      I VTEIPYQV K+ L+ KIAEL+  ++I  + D+RDES      
Sbjct: 240 IQAKAHIGEVD-NRKAIFVTEIPYQVNKAELVVKIAELVKDRKIVGISDLRDESDRQGMR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  +P  ++ S++  ++M T F +NM  L     PQV+ L  +LK ++  R  +
Sbjct: 299 VVIELKRDAEPQQVLNSLYKHTNMRTSFFVNMLALVD-GQPQVLSLKEVLKNFIDFRHLI 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS F ++A   R  IL+GL  A   ID IIAIIRN +       +    F  +  Q 
Sbjct: 358 ITRRSQFELKAAKDRAHILEGLKKALDFIDRIIAIIRNSENGDTARKNLVAEFDFSVIQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+L+LR L  LE  +I  E   L+     ++ LL+  ++ +  +  + +++K  + +
Sbjct: 418 QAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLKGSYGQ 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKE 547
                       E    D       ++       +      +          +  +  +E
Sbjct: 478 PRATEISSQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTGIMGMPTRE 537

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH---GEAIQLLIDLNHNQDIVT 604
            D+++    + T D +L  +  GK ++L   ++         G AI  LI +  ++ I  
Sbjct: 538 ADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPVTQDERITA 597

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                 + +   LL+ ++KG        E  A    G   + +++ +++   V+ T +  
Sbjct: 598 ILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDELVAAVETTEEKD 657

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRS 718
           + +     + + F + ++    R   GV+      G   +V+   +  EG   I      
Sbjct: 658 ILLATRMGQSIRFPVSELRTSLRASGGVKAIVLSKGD--EVVSMDVAQEGTLVITVTENG 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +           R G G +  K   ++G+ ++S
Sbjct: 716 AGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVAS 750



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 67/225 (29%), Gaps = 16/225 (7%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 R T   ++              K  I                S  L A+     
Sbjct: 588 PVTQDERITAILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVR----SSGLIAMDLATS 643

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L  A+       ILL +  G++   P   L +           I L+   ++V+  V 
Sbjct: 644 DELVAAVETTEEKDILLATRMGQSIRFPVSELRTSLRAS-GGVKAIVLSKGDEVVSMDVA 702

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVV 664
                ++ V+  G   +    E     R G   +       + E +   V    D + ++
Sbjct: 703 QEGTLVITVTENGAGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVASKVVSETDQMMLI 762

Query: 665 GENRKLLIFSIDQ------IPEMSRG-KGVRLQSYKDGGISDVIC 702
             +  +    + +      IP M R  +GVR+   ++G     + 
Sbjct: 763 SADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAVA 807


>gi|261494960|ref|ZP_05991429.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309369|gb|EEY10603.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 898

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/821 (31%), Positives = 386/821 (47%), Gaps = 81/821 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +  
Sbjct: 2   SELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I+N +IS+E+L+ YI GPDFPTG  I+  R+ I E+YR GRG  
Sbjct: 182 IPPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGA-IINGRKGIEEAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I D S +   
Sbjct: 241 YVRAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRRE
Sbjct: 301 SIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALD-NGQPKVLNLRQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IR     +                
Sbjct: 360 VVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V    + L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +L S ++    I  E+  VK  F+          +         A     
Sbjct: 480 LLTEIGELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+   +  M R
Sbjct: 660 KVSLDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAMGR 719

Query: 684 -GKGVRLQSYK------------------------------DGGISDVICFKICEGLTWI 712
              GVR                                   D      +     EG   +
Sbjct: 720 TATGVRGIKLSTTEISSEEIEEAEIIETDNEEAEDSSSVSLDKDRVVSLVIPRTEGD-IL 778

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 Y +        +  R   G +  K   R+GK +++
Sbjct: 779 TVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAA 819



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 47/138 (34%), Gaps = 8/138 (5%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLV 653
               +V+  +  +   +L V+  G       SE    +R  K  + +   E+    +  V
Sbjct: 761 DKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAAV 820

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKICEGL 709
                D + ++ +   L+   + ++  + R  +GVR+    +         +C    +  
Sbjct: 821 QVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPEDDEN 880

Query: 710 TWIDSAGRSYNRSENDLL 727
             +D+   +     +   
Sbjct: 881 ESLDALENAETVETSTEE 898


>gi|75676105|ref|YP_318526.1| DNA topoisomerase IV subunit A [Nitrobacter winogradskyi Nb-255]
 gi|74420975|gb|ABA05174.1| DNA topoisomerase IV subunit A [Nitrobacter winogradskyi Nb-255]
          Length = 749

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/735 (56%), Positives = 538/735 (73%), Gaps = 1/735 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G+AFKKS
Sbjct: 12  EIAEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGSAFKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEAR
Sbjct: 72  AKIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNIDGDNPAAYRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L G+DEDAV+FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN
Sbjct: 132 MTDVARLLLDGIDEDAVEFRPNYDGQSREPVVLPGGFPNLLANGAQGIAVGMATAIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LID P+     LL+++ GPDFPTGGII++S+ESI E+Y  GRG FR RA+
Sbjct: 192 AAELCDAALHLIDKPDAKSTSLLKWVKGPDFPTGGIIIDSKESIAEAYATGRGAFRTRAK 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE  RG+W IVVTEIP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAED+R+V+ P
Sbjct: 252 WHREEGARGTWVIVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDIRVVIEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++DP+L+MES+F L+++E+R  LN+NVL  G++P+V+ L   L+EWL H R+VL RR
Sbjct: 312 KSRNVDPELVMESLFRLTELESRISLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S+ R   I+ R+E+L G LIAYLNIDE+I IIR ED+PKP ++  F LTE Q +AILN+R
Sbjct: 372 SAHRKAQIEHRLEVLGGYLIAYLNIDEVIRIIRTEDEPKPALIKAFKLTEVQAEAILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE +I++E  +L AE + I+++L S  +QW ++  ++R V+++F   T LG+R
Sbjct: 432 LRSLRKLEEMEIRTEDKDLRAELKGINAVLGSEARQWEKVGEQVRNVRDMFGPRTPLGKR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +    D A L+++++E+EP+TVV+S++GW+R+LK H  DLS L FK  D L  A 
Sbjct: 492 RTVFADAPEHDLAALEESLVEREPVTVVVSDKGWVRTLKGHVEDLSNLSFKTDDKLGFAF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A TT ++LL +T+GK Y+L    L  GRGHGE I+L IDL  +  IV+ FV+    K L
Sbjct: 552 FAETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQDAAIVSLFVHTGGRKFL 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           + S +G  F+V E + ++ TRKGK  L V    + K +  V GD VAV+G N K+++F +
Sbjct: 612 IASHEGQGFVVNEDDCVSTTRKGKQVLNVEMPNEAKAITTVAGDQVAVIGTNHKMVVFPL 671

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           DQ+PEM+RG+GVRLQ YKD G+SDV  F    GLTW DSAGR  + S  DL  W G R  
Sbjct: 672 DQVPEMARGRGVRLQKYKDAGLSDVAVFNSKIGLTWKDSAGREQSLSWKDLSDWRGNRAD 731

Query: 736 VGSLVPKGFPRSGKF 750
            G L   G P+S KF
Sbjct: 732 AGRLAH-GLPKSNKF 745


>gi|298243499|ref|ZP_06967306.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963]
 gi|297556553|gb|EFH90417.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963]
          Length = 852

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/757 (34%), Positives = 402/757 (53%), Gaps = 29/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K V++   +   YL Y++S I  RA+PD+RDG KPVHRRI++AM +MGL     ++K 
Sbjct: 5   NIKTVNIVEQMTGAYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMEQMGLQSNRTYRKC 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A  VGEV+   HPHGD SVY++LVR+AQP+  RYPL+ GQGNFG+ D D  AA RYTEA+
Sbjct: 65  AGTVGEVLKSYHPHGDASVYEALVRMAQPWSMRYPLVLGQGNFGSQDDDPPAAMRYTEAK 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A+ +L+ +D+D VDF   Y+ +  EPVVFP++ PNLL NGT+GIAVGMAT+IP HN
Sbjct: 125 MAAIADELLRDIDKDTVDFVPNYDNQAKEPVVFPARLPNLLLNGTTGIAVGMATNIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EIC+  + LI+NPE + E L   + GPDFPTGG +++ RE I  +Y  GRG   +RAR
Sbjct: 185 LHEICDGIIHLIENPEATTEDLARIVRGPDFPTGG-LIQGREGIRNTYANGRGRIVIRAR 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE  RG   I+ TE+PYQV K+ L++KIAEL   KRI  + ++RDES      ++  
Sbjct: 244 THIEENERGRASIITTELPYQVNKADLVKKIAELARDKRIEGISEVRDESDRQGMRMVVE 303

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P  ++ S+F  + M++ F  NM  L     PQ + L   L+ ++ HR +V+ RR
Sbjct: 304 LKRDANPRSILNSLFKYTAMQSSFNTNMLALVDS-QPQTLTLKKFLQHYITHREQVITRR 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----PVMVSRFSLTENQVDAI 431
           + F ++  + R  IL+GL IA  N+DE+I IIR   +        +   F  +  Q  A+
Sbjct: 363 TQFELRKAEARKHILEGLKIAMDNLDEVINIIRGSRRETAGLAEELQQTFGFSNEQARAV 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL SL  L+  +++ EL ++L   +    LL+   +    I  +++E+KE F  +  
Sbjct: 423 LDMRLASLAALQRQKVEDELRDVLQHIDYYHKLLSDINEIRGIIMADLKELKEKFGDA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RRT   E     +    + +I  E + V ++ +G+I+ L S +          ++ +
Sbjct: 481 ---RRTEIEE--GEVRDFKDEDLIPNEEVVVTLTEKGYIKRLPSGTYRAQRRGGRGVTGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQD 601
             +E D+++  L  HT D +L  +  G+ + L    L        GE +  LI +   + 
Sbjct: 536 ATREDDTVRHLLVPHTHDSLLFFTDRGRVFQLRVYELPDTSRTARGEHLINLISIEQRER 595

Query: 602 IVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +              L+V + KG       S+     R G   + +  ++++     V  
Sbjct: 596 VTAIVYVPKGHTHDFLVVATKKGEVKKTAMSDFEVVRRSGLIAMNLEDDDELIGAKLVGP 655

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           +  V ++  +   + F +DQ+   SR   GVR     D      +   I  G   +    
Sbjct: 656 EADVLLITLHGHAIRFGVDQLRSASRTSGGVRGIRLTDDDTVVSLNAVIP-GGELLVVTE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +           RGG G L  K   ++GK  S+
Sbjct: 715 HGYGKRTPIDEYPTYNRGGSGVLTSKVTEKTGKVASA 751



 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 68/220 (30%), Gaps = 11/220 (5%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           +   R T    V +           +K  +     +   +         L A++ ++ D 
Sbjct: 591 EQRERVTAIVYVPKGHTHDFLVVATKKGEVKKTAMSDFEVVRRS----GLIAMNLEDDDE 646

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L  A        +LL++  G A      + L            I L  +  +V+      
Sbjct: 647 LIGAKLVGPEADVLLITLHGHAIRFGV-DQLRSASRTSGGVRGIRLTDDDTVVSLNAVIP 705

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT--GDHVAVVG 665
             +LLVV+  G        E     R G   L     EK   +     VT   + + ++ 
Sbjct: 706 GGELLVVTEHGYGKRTPIDEYPTYNRGGSGVLTSKVTEKTGKVASARMVTEEDNDLMLIS 765

Query: 666 ENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFK 704
            +  ++   +  + +  R  +GV L +  +      +   
Sbjct: 766 ASGVVIRTDVSLVRQAGRATQGVTLMNLAEDDKVVAVAVA 805


>gi|313205817|ref|YP_004044994.1| DNA gyrase subunit a [Riemerella anatipestifer DSM 15868]
 gi|312445133|gb|ADQ81488.1| DNA gyrase subunit A [Riemerella anatipestifer DSM 15868]
 gi|325336743|gb|ADZ13017.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Riemerella anatipestifer RA-GD]
          Length = 841

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/765 (29%), Positives = 392/765 (51%), Gaps = 38/765 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  +G+     + K
Sbjct: 6   ERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKKYLK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RYTEA
Sbjct: 66  SARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++++ IL  +D++ VDF++ +++   EP V P+K PNLL NGTSGIAVGMAT++  H
Sbjct: 126 RLKKISDEILSDLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNMAPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A  A IDN  I I++L++YII PDFPTGG I+   + + +++  GRG   +RA
Sbjct: 186 NLSESVDAICAYIDNKNIEIDELMKYIIAPDFPTGG-IIYGYDGVRDAFHTGRGRIVLRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EE+G     I+VTEIPY V K+ +I + +EL+   +I  + +IRDES      V++
Sbjct: 245 KVAFEEIG-NRNAIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRVVY 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                  P++++  ++  + ++T F +N   L     PQ + L  I+  ++ HR E++ R
Sbjct: 304 ELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVK-GRPQQLNLKDIIVHFVEHRHEIVIR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAY------LNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + ++    R  IL+G +              II         K  +++ F L++ Q 
Sbjct: 363 RTQYELKKARERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLIAEFELSDIQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+LRL  L  +E  +I+ E   ++     ++ +L +  + +  I  E+ EVKE +  
Sbjct: 423 QAILDLRLARLTGMELDKIRDEYKAIMDLINDLEDILANEARCYQIIKDELLEVKEKYGD 482

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT   E+  +      +  I  E + + IS+ G+I+              V  
Sbjct: 483 E-----RRT---EIDYSGGEMSIEDFIPNEEVVLTISHAGYIKRTLLSEYKTQSRGGVGN 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
            A   ++ D L+  + A     +L  +  GK Y L    +  G    +  AIQ LI++  
Sbjct: 535 RAASTRDEDFLEYIVSATNHQYMLFFTEKGKCYWLRVFEIPEGSKTAKGRAIQNLINIEP 594

Query: 599 NQDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  I      +            +++++  G                G   +++  ++++
Sbjct: 595 DDKIKAYIRTNDLKDSEYVKQMYVVMITKNGTIKKTSLEAYSRPRTNGIHAIEIREDDQL 654

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD-GGISDVICFKICE 707
                  G+  + +  +N K + F  ++   + R   GVR  S +D   +  +I     E
Sbjct: 655 LGARLTNGNSEIMIATKNGKCIRFPEEKARAVGRTSIGVRGISLEDNDEVIGMIVVNDME 714

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             T +  + + Y +        +  RGG G +      ++G+ ++
Sbjct: 715 NETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGQLIA 759



 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 8/194 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            I         +  +  + A+  +E D L  A   +    I++ + +GK    P     +
Sbjct: 626 TIKKTSLEAYSRPRTNGIHAIEIREDDQLLGARLTNGNSEIMIATKNGKCIRFPEEKARA 685

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                  ++  I L  N +++   V +      +LVVS KG        +     R GK 
Sbjct: 686 VGRTSIGVRG-ISLEDNDEVIGMIVVNDMENETVLVVSEKGYGKRTAVEDYRVTNRGGKG 744

Query: 641 FLKVSSEEK---MKLVV-KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            + ++  EK   +  +   V G+ + ++ ++   +  S+D +  M R  +GVRL + K+ 
Sbjct: 745 VITLNITEKTGQLIAIQSVVDGNDLMIINKSGVAIRMSVDNMRVMGRNTQGVRLINLKNN 804

Query: 696 GISDVICFKICEGL 709
                +     E  
Sbjct: 805 DEIAAVAKVEAEKD 818


>gi|237799018|ref|ZP_04587479.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021872|gb|EGI01929.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 928

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/834 (30%), Positives = 412/834 (49%), Gaps = 104/834 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE++I++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++  E   
Sbjct: 422 VEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +LNS  +    I  E+  ++  +  +     RRT   +   A        
Sbjct: 482 ILTQIGELIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +L+
Sbjct: 534 LITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLM 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----------- 612
            S+ GK Y L    +        G  +  L+ L+  + I T    D              
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEA 653

Query: 613 -------------------------------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                                           + + ++ G                G   
Sbjct: 654 LEAELDDAENSNETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIA 713

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           L++   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    
Sbjct: 714 LELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLI 773

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLI-PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 6/168 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  SV L AL   EGD L  A        I+L S  GK       ++ +       ++ +
Sbjct: 705 RQRSVGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGM 764

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---- 649
             L   Q +++  + +   ++L  S +G       SE     R G+  + + S E+    
Sbjct: 765 R-LPEGQKLISMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRL 823

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +  V  + G+ + ++ +   L+   + ++  + R  +GV L       
Sbjct: 824 VGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTLIKLASDE 871


>gi|71737548|ref|YP_275809.1| DNA gyrase subunit A [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558101|gb|AAZ37312.1| DNA gyrase, A subunit [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 928

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/834 (30%), Positives = 412/834 (49%), Gaps = 104/834 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE++I++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D  
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL LRL  L  LE  ++  E   
Sbjct: 422 VEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +LNS  +    I  E+  ++  +  +     RRT   +   A        
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELEVIRSEYGDA-----RRTEILD---ARLDLTLGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+         ++ +      SA   K+ D +   L A++   +L+
Sbjct: 534 LITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLM 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----------- 612
            S+ GK Y L    +        G  +  L+ L+  + I T    D              
Sbjct: 594 FSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEA 653

Query: 613 -------------------------------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                                           + + ++ G                G   
Sbjct: 654 LEGELDDAENSSETEEERKACIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIA 713

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           L++   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    
Sbjct: 714 LELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLSEGQKLI 773

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLI-PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 56/141 (39%), Gaps = 6/141 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S  GK       ++ +       ++ +  L+  Q +++  + +   ++L  S +
Sbjct: 732 QEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMR-LSEGQKLISMLIPEEGSQILTASER 790

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L+   + 
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVG 850

Query: 677 QIPEMSR-GKGVRLQSYKDGG 696
           ++  + R  +GV L       
Sbjct: 851 EVSSLGRNTQGVTLIKLASDE 871


>gi|313671975|ref|YP_004050086.1| DNA gyrase subunit a [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938731|gb|ADR17923.1| DNA gyrase subunit A [Calditerrivibrio nitroreducens DSM 19672]
          Length = 805

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/745 (34%), Positives = 393/745 (52%), Gaps = 30/745 (4%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +  YL YA+S I  RA+PD+RDG KPVHRR+++AM EMGL     +KKSAR+VG+VIGK 
Sbjct: 18  KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYEMGLSHNKPYKKSARVVGDVIGKF 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD +VYD+LVRLAQ F  RYPL+ GQGNFG++DGDSAAA RYTE RM ++ + +L  
Sbjct: 78  HPHGDSAVYDTLVRLAQDFSMRYPLVDGQGNFGSVDGDSAAAMRYTEVRMAKITDELLLD 137

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+D VDF   Y+    EP+V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A +  
Sbjct: 138 IDKDTVDFAPNYDGSIEEPLVLPTRVPNLLINGSSGIAVGMATNIPPHNLGEVVDALIHR 197

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           IDNPE +++ +L++I GPDFPT G I+     +  +Y  GRG  ++RAR  ++++  G  
Sbjct: 198 IDNPESTLDDILKFIKGPDFPTAG-ILMGVSDLKTAYLTGRGAIKIRARAEIQQLKSGKE 256

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            IV+TEIPYQV KS LIEKIAEL+  K I  + ++RDES  D   V+    +   PD+++
Sbjct: 257 QIVITEIPYQVNKSSLIEKIAELVRDKVIVGITELRDESDRDGIRVVIEIKKGELPDVIL 316

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             ++  + ME  F +N   L     PQ +PL  IL E++ HR  ++ RR+ F ++  + R
Sbjct: 317 NQLYKFTQMEVTFGINTVALV-NGRPQTLPLLKILDEFIGHRITIVTRRTKFLLRKAEER 375

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNLRLRSLRKLE 443
           + IL+GL  A  NIDE+IAII+     K            ++ QV AIL+++L+ L  LE
Sbjct: 376 LHILEGLKTAVENIDEVIAIIKGSADVKEAKAKLIDRFSFSDLQVSAILDMKLQKLTGLE 435

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             ++  E    L   E   S+LN+ +     I  E+ E+K+ ++      +RRT      
Sbjct: 436 IEKLVEEYKETLKNIEYYKSILNNHQILMGIIKDELLEIKDKYAD-----KRRTEIV--- 487

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
                   + +I    + V I+N+G+I+          K      SA   K  D ++  +
Sbjct: 488 YDHNELSIEDLIPDTEMVVTITNQGYIKRTPLSFFSSQKRGGKGKSATLSKGEDFIETLI 547

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS--- 610
                 ++L  +  GK + L    L        G  I  L+  +  + I +         
Sbjct: 548 VTSNHSKLLFFTNQGKIHFLKVYELPESAPGTRGRHISNLLSFSQGEYIASVVTLSDLDH 607

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL-VVKVTGDHVAVVGENRK 669
              + + +  G        E  +  R G   +K+   +++   V+    D++ +   N K
Sbjct: 608 DKYIFMCTKYGIVKKTAVEEFKS-GRSGIVAMKLRENDELVSTVITTDNDNITIATRNGK 666

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            + F   ++ +M R   GVR  + ++      +   +      +      Y +       
Sbjct: 667 TIQFESKEVRDMGRTATGVRGITLEEDDYVVSMEV-LTGAPFILTVTSNGYGKCSLVSDY 725

Query: 729 WLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  RGG G  + K  P++G  + +
Sbjct: 726 RIQSRGGKGLKLSKVTPKTGPIVGA 750



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 71/187 (37%), Gaps = 8/187 (4%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +  +   KS    + A+  +E D L   +     D I + + +GK     +  +     
Sbjct: 621 KKTAVEEFKSGRSGIVAMKLRENDELVSTVITTDNDNITIATRNGKTIQFESKEVRDMGR 680

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV- 644
               ++  I L  +  +V+  V      +L V+S G       S+    +R GK  LK+ 
Sbjct: 681 TATGVRG-ITLEEDDYVVSMEVLTGAPFILTVTSNGYGKCSLVSDYRIQSRGGKG-LKLS 738

Query: 645 ---SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
                   +    +V   D V ++ +  K++  ++  IP + R  +GV+L S  D  I  
Sbjct: 739 KVTPKTGPIVGAKQVKLEDDVMLMSKTGKIIRIAVSDIPVLGRDTQGVKLMSVADDEIVS 798

Query: 700 VICFKIC 706
               K  
Sbjct: 799 FAIVKEE 805


>gi|304391955|ref|ZP_07373897.1| DNA topoisomerase IV, A subunit [Ahrensia sp. R2A130]
 gi|303296184|gb|EFL90542.1| DNA topoisomerase IV, A subunit [Ahrensia sp. R2A130]
          Length = 765

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/741 (58%), Positives = 565/741 (76%), Gaps = 5/741 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ + L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+  A F K A
Sbjct: 25  IEPIDLKTALEERYLAYALSTIMGRALPDVRDGMKPVHRRILHAMRLLRLNPEAGFAKCA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD S+YD+LVRL+Q F  RYPL+ GQGNFGN+DGD+ AA RYTEARM
Sbjct: 85  RIVGDVMGKFHPHGDASIYDALVRLSQSFAVRYPLVDGQGNFGNVDGDNPAAMRYTEARM 144

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A  +L+G+ EDAVDFR TYNEED EP+V P+ FPNLLANG++GIAVGMAT+IP HNV
Sbjct: 145 TPAAMSLLEGITEDAVDFRATYNEEDEEPIVLPAAFPNLLANGSAGIAVGMATNIPPHNV 204

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+C+AAL LI  P    +KL+E++ GPDFPTGGIIVES  S++E+Y+ G+GGFR+RARW
Sbjct: 205 EELCDAALHLIKFPNAGFDKLMEFVPGPDFPTGGIIVESPASMLETYKTGKGGFRLRARW 264

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             E++GRG W IVVTEIPYQV KS+LIEK AEL++AK++PLL+DI DESAED+R+VL PK
Sbjct: 265 EKEDLGRGQWQIVVTEIPYQVGKSKLIEKTAELLLAKKLPLLDDINDESAEDIRVVLTPK 324

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +RS+DP LLME +F L+D+ETRFPLNMNVL  G+VP+VM +  +L+ WL HR+ VL RR+
Sbjct: 325 SRSIDPALLMEQLFRLTDLETRFPLNMNVLDGGKVPKVMSIRDVLRAWLEHRKVVLVRRN 384

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+  I++R+E+L G +IAYLNIDE+I IIR ED PK  +++RF LT+ Q +A+LNLRL
Sbjct: 385 RNRLAQIEKRLEVLGGYIIAYLNIDEVIRIIRTEDHPKQALIARFELTDAQAEAVLNLRL 444

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R+L KLEE +++ E  +L  EK  I+ LL S + QW  IA E+ + K+ FSK+TDLG RR
Sbjct: 445 RALHKLEEMELRKEFSDLKEEKASIEGLLASDELQWKTIAWEVGQTKKKFSKATDLGARR 504

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           TTF      D   +  AMIEKEP+T+V+S +GWIR+LK H+ D +AL FKEGD L  A H
Sbjct: 505 TTFETAMEVDLDAVAAAMIEKEPVTIVVSQKGWIRALKGHAPDFAALTFKEGDKLLTAFH 564

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TTD++L+ +T GK YTL A  L  GRGHGE +++++D++++ DI++ F++    K ++
Sbjct: 565 AETTDKLLMFTTAGKFYTLAADKLPGGRGHGEPVRIMVDMDNDADILSLFIHKPGRKRML 624

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-----GDHVAVVGENRKLL 671
           VSS GN F+V E+++IANTRKGK  L V+   + KL          GDHVAVVGENRKLL
Sbjct: 625 VSSLGNGFVVAETDLIANTRKGKQSLNVAMPVEAKLCPATDHEGEAGDHVAVVGENRKLL 684

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           IF +DQ+PEM RGKGVRLQ YKDGG+ D   FK+ +GL+W DSAGR++ R+ ++L  ++ 
Sbjct: 685 IFPLDQVPEMGRGKGVRLQRYKDGGVKDARLFKLADGLSWTDSAGRTHTRTADELKEYIA 744

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
            R   G +VPKGFP+SG F  
Sbjct: 745 DRAQAGRMVPKGFPKSGTFAG 765


>gi|298529210|ref|ZP_07016613.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510646|gb|EFI34549.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1]
          Length = 813

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/754 (34%), Positives = 413/754 (54%), Gaps = 28/754 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +S+   +++ YL Y+LS I  RAIPD+RDG KPVHRRI++AM E+G  +   +KKSAR+
Sbjct: 3   NISIEQEIKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRPYKKSARV 62

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+IDGD+ AA RYTEARM++
Sbjct: 63  VGDVIGKYHPHGDSAVYDALVRMAQDFNMRDPLVDGQGNFGSIDGDAPAAMRYTEARMSR 122

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A   L  ++++ V+FR  Y+   +EP V P++ PN+L NG+SGIAVGMAT+IP HN+ E
Sbjct: 123 LAGEFLADIEKNTVNFRANYDNTLTEPEVLPARVPNILVNGSSGIAVGMATNIPPHNLGE 182

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+DNPE +I +L+++I  PD PTG  I  + + ++E+YR GRG F++R+R  V
Sbjct: 183 VIDALLQLLDNPETNISQLMQHIKAPDLPTGAYIY-NLKGVLEAYRTGRGSFKIRSRLDV 241

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E   RG   IV+ E+PY + K+ L+EKIA L+  K+I  + D+RDES  +   ++    +
Sbjct: 242 ETRSRGHESIVINEVPYALNKANLVEKIAGLVNDKKIEGISDLRDESDRNGIRIVIDLKK 301

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++  ++ L+ +ET F +NM  +     PQ++ L  +L+ +L HR+EV+ RRS  
Sbjct: 302 GAISDVIINKLYKLTALETSFGINMMAVV-NNRPQLLNLKQVLEYFLEHRKEVILRRSRH 360

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL IA  NIDE++ +IR+     + +  ++S FSL++ Q  AIL++R
Sbjct: 361 DLEKAEHRAHILEGLQIALDNIDEVVRLIRSSSTGAEAREKLISNFSLSQVQAQAILDMR 420

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  +E  ++  E   LL + E + S+L +      +I  E++E+K+ +S       R
Sbjct: 421 LQRLTNMEREKLMQEYRELLQQIEFLKSILENIDILKGEIKKELQEIKKTYSTP-----R 475

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           RT   E      +     +I    + V +S  G+I+          K     ++  +  +
Sbjct: 476 RTQILEQDPD--SIEMLDLIPDHDVVVTLSRNGYIKRTLLEYYHQQKRGGKGIAGANVGD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D +           I L S  GK+Y L A  +        G  I+ L+ L++ + I TA
Sbjct: 534 KDFITTLFTTSNHKDIYLFSNTGKSYLLKAYEIPEGSRTARGVHIKNLLPLDNEEYIATA 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                +      L V+ KG                G   + +   +++  V  V  +  V
Sbjct: 594 LSERNFHQRHYFLFVTKKGMVKKTSIEMFKNMRSLGLIAVNLKPGDELIGVKVVKDESEV 653

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSY 719
            +   +   + F+  ++  M R   GV+  S + G  +         E       + + +
Sbjct: 654 IITTHDGLAIRFACRELRAMGRNAAGVKGISLRQGDEVVSGAVLDPGEARELFTISEKGF 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +  +  L  RGG G +  K   ++GK +SS
Sbjct: 714 GKKTSLDMYKLQARGGKGLINMKVTSKTGKVVSS 747



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 7/142 (4%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIAN 634
           A   L   G   A    I L    ++V+  V D     +L  +S KG             
Sbjct: 666 ACRELRAMGRNAAGVKGISLRQGDEVVSGAVLDPGEARELFTISEKGFGKKTSLDMYKLQ 725

Query: 635 TRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R GK  + +       K+   + V+  + + +     K++      I  + R  +GV++
Sbjct: 726 ARGGKGLINMKVTSKTGKVVSSMPVSDQEELIIFTSANKIIRLGTSDIRSVGRSTQGVKM 785

Query: 690 QSYKDGGISDVICFKICEGLTW 711
              ++          I E    
Sbjct: 786 VDLENDQKVICADLIIPEQHLL 807


>gi|108759045|ref|YP_629032.1| DNA gyrase subunit A [Myxococcus xanthus DK 1622]
 gi|108462925|gb|ABF88110.1| DNA gyrase, A subunit [Myxococcus xanthus DK 1622]
          Length = 942

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/805 (31%), Positives = 401/805 (49%), Gaps = 79/805 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   +   YL Y++S I  RA+PD+RDG KPVHRR+++AM+++G     A+KKS
Sbjct: 23  ELIPVNIEDEMRRSYLDYSMSVIVGRALPDVRDGLKPVHRRVLYAMNDLGNLHNRAYKKS 82

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD SVYD++VRLAQ +  RY L+ GQGNFG++DGDS AA RYTE R
Sbjct: 83  ARVVGDVIGKYHPHGDSSVYDAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVR 142

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++AE +L  +D++ VDF   Y++   EP+V PSKFPNLL NG+SGIAVGM T+IP HN
Sbjct: 143 MERLAEDLLADIDKETVDFGPNYDDSLEEPLVLPSKFPNLLVNGSSGIAVGMTTNIPPHN 202

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    L LIDNP  ++  L+E+I GPDFPTG II   RE IV +Y  GRG   +RAR
Sbjct: 203 MTEVISGTLHLIDNPGCTVRDLMEFITGPDFPTGAIIT-GREGIVRAYETGRGQVTIRAR 261

Query: 256 WCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +E   RG    I+ +EIPYQV K+RLIEKIAEL+  K++  + DIRDES      ++ 
Sbjct: 262 SDIETSKRGDREAIIFSEIPYQVNKARLIEKIAELVREKKLEGISDIRDESDRQGMRIVI 321

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ +++ ++ +ET F   + +   G  P+ + L  +L  ++AHRR+V+ R
Sbjct: 322 ELKRDAISQVVLNNLYAMTSLETTFGA-VMLAIDGGQPRTLNLKEMLDRFIAHRRDVVTR 380

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R+ + ++    R+ I++GLL+A   ID ++++IR    P                     
Sbjct: 381 RTRYELRKALARMHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMNILSPSLYEHERF 440

Query: 416 ---------------------------------VMVSRFSLTENQVDAILNLRLRSLRKL 442
                                                    +E Q   IL +RL+ L  L
Sbjct: 441 ATLQRIDYDKAKAQMELLVSRARNEEPSYAGLAHKYEGAGFSEGQAQNILEMRLQRLTGL 500

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +  ++  EL  L+ +  ++  +L + +   N I  E+ E++E +       +RRT   E+
Sbjct: 501 QREELFRELIGLVRDIARLQDILANERSLLNVIKTELVEIRERYGD-----KRRT---EI 552

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIA 554
           + A      + +I +E + V +S+ G+I+          K      +    KE D +   
Sbjct: 553 TGAVDEMTSEDLIAEETMVVTLSHTGYIKRSPLTEYRAQKRGGRGKTGAATKEDDFVSKL 612

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YD 609
             A T   ++ ++T GK Y+L    +        G+A+  L+     + +    V   + 
Sbjct: 613 FVASTHAYLMPITTKGKLYSLKVHQVPQASRTSRGKAMVNLVQFGEGERLAQVLVTRDFP 672

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENR 668
               +  V+ +G     + S        G   L +   +++  V+   G   + +   + 
Sbjct: 673 ENRYVFFVTKRGVVKRTDLSAFENVRSSGIIALGIDDGDELVAVMITDGSKDILLSTASG 732

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
             + F   ++  M R   GV+  + +DG    V    +      +      Y +   +  
Sbjct: 733 MSIRFPETEVRSMGRQAYGVKGITLEDGDEV-VGADVVETDAAILTVTENGYGKRTQEAE 791

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
                RGG G +  K   R+GK + 
Sbjct: 792 YRQQGRGGKGIIDIKTTERNGKVVG 816



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 6/182 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  + AL   +GD L   +    +  ILL +  G +   P   + S       +   
Sbjct: 696 NVRSSGIIALGIDDGDELVAVMITDGSKDILLSTASGMSIRFPETEVRSMGRQAYGV-KG 754

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---- 649
           I L    ++V A V ++   +L V+  G     +E+E     R GK  + + + E+    
Sbjct: 755 ITLEDGDEVVGADVVETDAAILTVTENGYGKRTQEAEYRQQGRGGKGIIDIKTTERNGKV 814

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           + L+     D V +V     L+   + +I  + R  +GVRL + ++     +   K+ E 
Sbjct: 815 VGLLQVKEADEVMLVTNGGMLIRMRVKEISVIGRNTQGVRLIALENEQEKVMAISKLPES 874

Query: 709 LT 710
             
Sbjct: 875 DE 876


>gi|225873680|ref|YP_002755139.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196]
 gi|225793961|gb|ACO34051.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196]
          Length = 861

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/792 (28%), Positives = 379/792 (47%), Gaps = 57/792 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  +++   +   YL Y++S I  RA+PD+RDGFKPVHRRI++AM EMGL     + K 
Sbjct: 2   NLVPINIEEEMRRSYLDYSMSVIIGRALPDVRDGFKPVHRRILYAMHEMGLQHNKKYTKC 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VG+ +G  HPHGD ++YD+LVRLAQPF  RYP+I GQGNFG++DGD  AA RYTE R
Sbjct: 62  AKVVGQAMGVYHPHGDSAIYDTLVRLAQPFSLRYPMIDGQGNFGSVDGDPPAAMRYTECR 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  +D + VDF   Y+E   EP V P+K PNL+ NG++GIAVGMAT+IP HN
Sbjct: 122 MMRIAGEMLADIDMETVDFTPNYDESTLEPTVLPTKIPNLIVNGSNGIAVGMATNIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A + +++NP   + ++L+++ GPDFPTGG  +  R  I  +YR GRG F +RA+
Sbjct: 182 LTEVINATIEMVNNPHAGLAEVLQHVQGPDFPTGG-FIYGRSGIANAYRTGRGRFLMRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++ +G   I+VTEIPYQV K++LIE++A+L+  K I  + DIRDES  D   ++  
Sbjct: 241 ASIEQLPQGRSAIIVTEIPYQVNKAKLIERVADLVNDKVIDEISDIRDESDRDGMRIVIE 300

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++  ++  + M+  F +    +     P+ +PL   ++ ++ HR +V+ RR
Sbjct: 301 LKRGAEAQIVLNQLYKHTQMQESFSMIFLAVV-NGQPRELPLPDAIRHFIDHRVDVVRRR 359

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL------------ 423
           +++ ++    R  IL G  IA  ++D +I IIR          + F              
Sbjct: 360 TAYLLRKAREREHILLGYQIALDHLDHVIKIIRGSSSRADARENLFQFFSGRTITVRDEA 419

Query: 424 -------------------------TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                    +  Q+DAIL L+L  L +L   ++  EL  +    
Sbjct: 420 LAGVKLDPQKYAIDPATMIEATLTLSYRQIDAILELQLYRLTQLSIDELLKELAEVRERI 479

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            + +S+L S K+  + I  E+ +V++ +           T         A  Q A+    
Sbjct: 480 AEYESILASEKKLRSVIVKELEDVRKAYGDERRTQIVDETAELQLEDLIADEQVAVTVSH 539

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              +  +     R  K        +  +E D ++  L   T   +L  +  G+ Y L   
Sbjct: 540 SGYLKRTPISTYRQQKRGGTGRMGMKTREEDFVQQLLVDSTHAYLLCFTNTGRVYWLKIY 599

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEII 632
            +      G G++I  L++L   + +          +    +   +  G        +  
Sbjct: 600 EIPDVGAAGKGKSIASLLNLQPGEQVRAIMAVRDLTEEGKFIFFATRNGTVKKTPLKDFS 659

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
               +G   + +  E+++       G  +  +       + F  + +  M R  +GVR  
Sbjct: 660 NVMARGIIAIGIDEEDELMGATITDGSQIVFLATHEGMAIRFDENDVRSMGRPARGVRGI 719

Query: 691 SY-KDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
              K   +  +       G+           +      Y +  +     L  RGG G + 
Sbjct: 720 DLGKKDHVVGMAATPKDRGVGDDGKACACLILSVTQNGYGKRTDVDEYRLQTRGGKGVIN 779

Query: 741 PKGFPRSGKFLS 752
            K   ++GK +S
Sbjct: 780 VKTTAKNGKVVS 791



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRK 669
           +L V+  G     +  E    TR GK  + V       K+  +  V     + V+ +  K
Sbjct: 750 ILSVTQNGYGKRTDVDEYRLQTRGGKGVINVKTTAKNGKVVSIQLVDDTSELMVISQYGK 809

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           ++      +    R  +GVRL +            
Sbjct: 810 IIRIDTKGVRAAGRSTQGVRLLNLDTEDKVAAAVV 844


>gi|294673551|ref|YP_003574167.1| DNA gyrase subunit A [Prevotella ruminicola 23]
 gi|294473256|gb|ADE82645.1| DNA gyrase, A subunit [Prevotella ruminicola 23]
          Length = 843

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/769 (28%), Positives = 382/769 (49%), Gaps = 36/769 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T   + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +    
Sbjct: 2   DQTFDNDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMNINNVS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KK AR+VGEV+GK HPHGD SVY +LVR+AQ +  RY L+ GQGNFG++DGDS AA
Sbjct: 62  TQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMAQDWNMRYTLVDGQGNFGSVDGDSPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE R++++ E I+  +D++ VD    +++   EP V P+K PNLL NG +GIAVGMA
Sbjct: 122 MRYTECRLSKMGEHIMDDLDKETVDMAPNFDDSLEEPTVMPTKIPNLLVNGGNGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++P+HN+ E+ +   A IDNP+I  E L++YI GPDFPTG  I    + + ++Y  GRG
Sbjct: 182 TNMPTHNLGEVIDGCCAYIDNPDIDTEGLMQYIPGPDFPTGAYIY-GLQGVKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  + E G     IVVTEIPY V K+ L+  IA+L    +I  + ++ DES   
Sbjct: 241 RIVMRAKAEI-ESGDTHDKIVVTEIPYGVNKADLVAYIADLANQHKIEGVANVNDESGRQ 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+  +F ++ +++ F +N   L     P+++ L   +K ++ HR
Sbjct: 300 GMRIVVDCKRDANANVLLNKLFKMTALQSSFSVNNIALVK-GRPRLLSLKECVKYFVEHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTE 425
            +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIRN   P     +   RF L E
Sbjct: 359 HDVTIRRTKYDLRKAQERAHILEGLIIAVNNIDEVVHIIRNSKTPTDAQRNLEARFELDE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AI+++RL  L  L   Q+  E D+L     ++  +L++ ++    +  +++EVKE 
Sbjct: 419 LQSKAIVDMRLAQLTGLRVDQLHQEFDDLQKLIAELQEILDNPERCKEVMKADLQEVKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
           +        RRT              +     +P+ + IS+ G+I+              
Sbjct: 479 YGDE-----RRTEIIPFDHE---FNAEDFYPDDPVVITISHMGYIKRTPLSEFHEQGRGG 530

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID 595
               A   ++ D  +    A   + +L  +  G+ Y      +  G  + +  AIQ +++
Sbjct: 531 MGSKAARHRDNDFTEYIYPATMHNTLLFFTQKGRCYWQKCYEIPEGDKNSKGRAIQNMLN 590

Query: 596 LNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           +  +  I             + ++  ++  + +G                G   + ++  
Sbjct: 591 IEPDDAINAVLRIKNFNDTEFLNSHYVVFATKQGIIKKTCLEAYSRPRANGVIAININEG 650

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICF 703
           +++  V    G + + +   N + + F  + +  M R   GV        D  +  ++C 
Sbjct: 651 DQVVGVRLTNGHNELLLANRNGRAVRFDENDVRVMGRVSTGVIGMRLDGGDDEVVGMVCV 710

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 T +  +   Y +           RG  G        ++G+ ++
Sbjct: 711 NDPNTETIMVVSENGYGKRSEVEDYRKTSRGAKGVKTLSITEKTGRLVA 759



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 86/271 (31%), Gaps = 16/271 (5%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             +    +          ++  +        +   I   +        +  D        
Sbjct: 550 ATMHNTLLFFTQKGRCYWQKCYEIPEGDKNSKGRAIQNMLNI------EPDDAINAVLRI 603

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
              +  +       +   +   +  +        +++   + A++  EGD +      + 
Sbjct: 604 KNFNDTEFLNSHYVVFATKQGIIKKTCLEAYSRPRAN--GVIAININEGDQVVGVRLTNG 661

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVV 617
            + +LL + +G+A      ++         +  +     + ++V     +   T  ++VV
Sbjct: 662 HNELLLANRNGRAVRFDENDVRVMGRVSTGVIGMRLDGGDDEVVGMVCVNDPNTETIMVV 721

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLV-VKVTGDHVAVVGENRKLLIF 673
           S  G     E  +    +R  K    +S  E   ++  + V    + + ++ ++  L+  
Sbjct: 722 SENGYGKRSEVEDYRKTSRGAKGVKTLSITEKTGRLVAIKVVTDENDLMIINKSGVLIRL 781

Query: 674 SIDQIPEMSRG-KGVRLQSY-KDGGISDVIC 702
            +  +  M R  +GVRL +  K       +C
Sbjct: 782 KVADVRVMGRATQGVRLINLTKKNDSIASVC 812


>gi|313887643|ref|ZP_07821325.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846252|gb|EFR33631.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 809

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/758 (32%), Positives = 388/758 (51%), Gaps = 14/758 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +N ++E  +  V +   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M  + 
Sbjct: 1   MSENN-IIESGILDVDINKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMQGLN 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     ++KSAR+VG+V+GK HPHGD S+Y++ VRLAQ F  RY L+ GQGNFGNIDGD 
Sbjct: 60  LASNGPYRKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNTRYTLVDGQGNFGNIDGDG 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RMT++AE +L+ ++++ VDF   ++E + EP + P++FPNLL NG+SGIAV
Sbjct: 120 AAAMRYTEVRMTKLAEEMLRDINKETVDFVPNFDENEKEPTILPARFPNLLVNGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ E  +  +A IDN EISI +L + I GPDFPTG  I    E I E+Y  
Sbjct: 180 GMATNMAPHNMNESIDGIIAYIDNDEISISELNQIIKGPDFPTGAQI-MGTEGIKEAYET 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA   ++        IV+TE+PYQV KS LI KIAEL   K I  + +I D S
Sbjct: 239 GRGKITVRAVAEIKSFKNNREKIVITELPYQVNKSALIMKIAELAKNKDIDGISNITDAS 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  ++  + M+T F +    L     P+++ L  I++ ++
Sbjct: 299 NRKGINIIVELKRDANAEVVLNKLYKNTQMQTTFGIINLALV-NGRPEILNLKQIIRYYV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ EV+ RR+ F +   ++R  I++GL IA  NID II I+R        K      F 
Sbjct: 358 DHQVEVVTRRTKFDLDKAEKRAHIVEGLFIALDNIDRIIKIVRGSKDDKEAKEKFYEEFK 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++R+R L  LE  ++++E + L A+ +    +L +     N I  E+ E+
Sbjct: 418 LTEEQSQAILDMRIRRLTGLERDRLEAEYEKLQADIKWFKEILENNDVLMNLIKEELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +                           +   +   +   + G  +  K     +S+
Sbjct: 478 KEKYGDLRRTVISHARTDIEIEDIIKKEDVVITLTQFGYIKRMSEGTYKPQKRGGRGVSS 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQ 600
            + ++ D +K      T D IL  ++ G  + L A  +          AI  L+DL+ ++
Sbjct: 538 GNMRDKDFVKELFVTSTHDMILFFTSLGNVFKLKAYEIPEDSRTSRGTAIINLLDLDEDE 597

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            + +      YD     L+V+ KG        +     + G   +K++  +K+  V    
Sbjct: 598 RVTSIIPVKEYDPDLNFLMVTEKGLIKRTPFKDYKNIRKSGIIAIKLNEGDKLIDVHLTK 657

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D  V +V +    + F+ +Q+ +  R   GV+        I  V    + +    +  +
Sbjct: 658 DDEDVILVTKKGLSIRFNEEQVRKSGRNSMGVKSMDLDKDDIV-VSSDLVVDDKYLLVIS 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              Y +           RGG G L  K   ++G   S+
Sbjct: 717 ENGYGKLTEIDKYRPQNRGGKGLLTYKITNKTGDVASA 754



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 59/485 (12%), Positives = 146/485 (30%), Gaps = 27/485 (5%)

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +      G    A             I+   + +QV+      K       KR  ++E
Sbjct: 324 KNTQMQTTFGIINLALVNGRPEILNLKQIIRYYVDHQVEVVTRRTKFDLDKAEKRAHIVE 383

Query: 300 DIRDESAEDVRIVLFPKNRSLD----PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            +        RI+   +    D         E        +    + +  L+     ++ 
Sbjct: 384 GLFIALDNIDRIIKIVRGSKDDKEAKEKFYEEFKLTEEQSQAILDMRIRRLTGLERDRLE 443

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
                L+  +   +E+L           +  +EI +           +I+  R + + + 
Sbjct: 444 AEYEKLQADIKWFKEILENNDVLMNLIKEELLEIKEKYG---DLRRTVISHARTDIEIED 500

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           ++     +        +        K ++   +      + +K+ +  L  +        
Sbjct: 501 IIKKEDVVITLTQFGYIKRMSEGTYKPQKRGGRGVSSGNMRDKDFVKELFVTSTHDMILF 560

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP--------ITVVISNR 527
              +  V ++ +       R +    +         + +    P          ++++ +
Sbjct: 561 FTSLGNVFKLKAYEIPEDSRTSRGTAIINLLDLDEDERVTSIIPVKEYDPDLNFLMVTEK 620

Query: 528 GWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           G I+              + A+   EGD L         + ++L++  G +       + 
Sbjct: 621 GLIKRTPFKDYKNIRKSGIIAIKLNEGDKLIDVHLTKDDEDVILVTKKGLSIRFNEEQVR 680

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
               +   ++ + DL+ +  +V++ +      LLV+S  G   + E  +     R GK  
Sbjct: 681 KSGRNSMGVKSM-DLDKDDIVVSSDLVVDDKYLLVISENGYGKLTEIDKYRPQNRGGKGL 739

Query: 642 LKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           L       + +     V    D V ++  +  ++    + I    R   GV+L +  D  
Sbjct: 740 LTYKITNKTGDVASAAVVEKEDDVMIIANSGIIIRILTEDISVQGRNTSGVKLMNLTDAK 799

Query: 697 ISDVI 701
           +  V 
Sbjct: 800 VVAVA 804


>gi|310817029|ref|YP_003964993.1| DNA topoisomerase IV subunit A [Ketogulonicigenium vulgare Y25]
 gi|308755764|gb|ADO43693.1| DNA topoisomerase IV subunit A [Ketogulonicigenium vulgare Y25]
          Length = 769

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/774 (49%), Positives = 532/774 (68%), Gaps = 35/774 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALE----ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    ++ +    L   L     +RYL YALSTI  RA+PD RDG KPVHRRI++AM
Sbjct: 1   MTDTP---DDPLNPQELTETLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 57

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+ L  G  F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNI
Sbjct: 58  RELRLASGGGFRKSAKIAGDVMGNFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 117

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGDS AA RYTEARMT  AE +L G+DE+AVD+R  Y+    EPVV P+ FPNLLANG+S
Sbjct: 118 DGDSPAASRYTEARMTAAAEALLAGLDENAVDYRGNYDGTQEEPVVLPAAFPNLLANGSS 177

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+  A L LI  P    + LL +I GPDFPTGG+IVE  E+I +
Sbjct: 178 GIAVGMATNIPPHNLDEVISACLHLIRAPSADDDSLLAFIPGPDFPTGGVIVEDPENIRQ 237

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG FR+RA+W +E++GRG W I+VTEIPYQVQKS+LIE++AELI  K++P L D+
Sbjct: 238 AYRTGRGAFRLRAKWEIEDLGRGQWQIIVTEIPYQVQKSKLIERLAELIALKKVPALADV 297

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDESA+DVRIV+ P+ R+++P++LM  +F  S++E RF +NMNVL  G  P+V  L  +L
Sbjct: 298 RDESADDVRIVIEPRVRTIEPEMLMGMLFKNSELEIRFNMNMNVLIDGVTPKVCSLKEVL 357

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + +L HRREVL RR++ R++ ID R+E+L G + AYLN+D +I IIR ++ PK       
Sbjct: 358 RAFLDHRREVLQRRTTHRLEKIDHRLEVLAGFITAYLNLDRVIDIIRYDEDPKAALQAED 417

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                V+   LTE Q DAILN+RLRSLR+LEE ++ +E D L A
Sbjct: 418 WGLKIPRAADESRYVSPLGRPVAAGGLTEVQADAILNMRLRSLRRLEEIELVNERDALQA 477

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E+  + +L+   K QW++I+ E+++V++ F K++  G RRT F E  +       +AMIE
Sbjct: 478 ERAGLHALMGDEKLQWSRISDELKDVRKQFGKTSKGGARRTAFGE-GKEVADVPLEAMIE 536

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           +EP+TV+ S+ GWIR++K H      + FK+GD  + A HA TTDR+L  +++G+ YT+ 
Sbjct: 537 REPVTVICSDMGWIRAMKGHIALDQEMKFKDGDKARFAFHAETTDRLLAFASNGRFYTVL 596

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A NL  GRG GE ++L++DL ++  IV   ++    KL++ SS G+ FIV E ++IA TR
Sbjct: 597 AANLPGGRGTGEPLRLMVDLPNDAQIVDLLIHRPGQKLILASSAGDGFIVAEDDVIAQTR 656

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG 696
            GK  L +S      +V  V GDHVA VG+NRK+L+F++D++PEM+RGKGV+LQ +KDGG
Sbjct: 657 AGKQVLNLSEGASALIVKPVQGDHVACVGDNRKMLVFALDELPEMARGKGVKLQKFKDGG 716

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +SD++   + +GL+W +S GR   RSE DL  WLGKR G G + P+GFPR  +F
Sbjct: 717 LSDLVTLTLAQGLSWKESGGR--TRSEPDLSEWLGKRAGTGRMAPRGFPRDNRF 768


>gi|104780668|ref|YP_607166.1| DNA gyrase subunit A [Pseudomonas entomophila L48]
 gi|95109655|emb|CAK14356.1| DNA gyrase, subunit A, type II topoisomerase [Pseudomonas
           entomophila L48]
          Length = 920

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/838 (30%), Positives = 414/838 (49%), Gaps = 108/838 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  + ++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDN +I++++L+++I GPDFPT G ++  R+ I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNSDITVDELMQFIPGPDFPTAG-LINGRQGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RAR  +E++ +  G   IVVTE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 243 RARSEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRRE
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINIVALID-GRPRLLNLKDLLEAFVRHRRE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P                 
Sbjct: 362 VVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTAWESSAV 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+  Q  AIL+LRL  L  LE  ++ +E   
Sbjct: 422 QVMVERAGADSCRPEDLPEQYGLREGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +L+S ++    I  E+  ++  +  +     RRT   +   A        
Sbjct: 482 ILEQIGELIRILSSAERLMEVIREELEAIRAEYGDA-----RRTEILD---ARHDLNYGD 533

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           MI +E   V IS+ G+         ++ +      SA   K+ D ++  L A++   +LL
Sbjct: 534 MIPEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLL 593

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD-------------- 609
            S+ GK Y L   ++        G  +  L+ L   + I      D              
Sbjct: 594 FSSKGKVYWLKTYDIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQHADPEEEL 653

Query: 610 --------------------------------STCKLLVVSSKGNAFIVEESEIIANTRK 637
                                           +   + + ++ G        +       
Sbjct: 654 EDGDDGVIEGELVEVEEADEEDGDTPEWAAEPTGAYIFMATASGTVKKTPLVQFARPRSN 713

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   LK+   + +       G   V +  +  K++ F+   + EM R  +GVR      G
Sbjct: 714 GLIALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRTARGVRGMKLGKG 773

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +      G   + ++ R + +           RGG G +      R+G    +
Sbjct: 774 QRIISMLI-PESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLTGA 830



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 54/155 (34%), Gaps = 7/155 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +++ S  GK     A +++   G        + L   Q I++  + +S  ++L  S +G 
Sbjct: 738 VMMFSDAGKVIRF-AESVVREMGRTARGVRGMKLGKGQRIISMLIPESGAQILTASERGF 796

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK--LVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 S+     R   G   +       +    +    G+ + ++ +   L+   + ++
Sbjct: 797 GKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLTGAIQVQEGEEIMLISDQGTLVRTRVGEV 856

Query: 679 PEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTW 711
             + R  +GV L     D  +  V   +       
Sbjct: 857 SSLGRNTQGVTLIKLAADETLVGVERVQEPSEEEL 891


>gi|255532057|ref|YP_003092429.1| DNA gyrase subunit A [Pedobacter heparinus DSM 2366]
 gi|255345041|gb|ACU04367.1| DNA gyrase, A subunit [Pedobacter heparinus DSM 2366]
          Length = 869

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/770 (30%), Positives = 406/770 (52%), Gaps = 35/770 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +      + +  + +   +   Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++GL
Sbjct: 3   EDLENQENDKIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLDLGL 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                +KKSARIVGEV+GK HPHGD SVY+++VR+AQ +  RY ++ GQGN+G+IDGDS 
Sbjct: 63  ANNKPYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSIDGDSP 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR  ++AE +L  +++D VDF+  +++   EP V PSK PNLL NG+SGIAVG
Sbjct: 123 AAMRYTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSSGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++P HN+ E   A +A IDN EI+I +L+++I  PDFPTG  I+     + E++  G
Sbjct: 183 MATNMPPHNITETINATIAYIDNNEITIAELMKFIKAPDFPTGA-IIYGYTGVQEAFETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +RA+  + E  +    I+VTEIPYQV K+++IE+ AEL+  K++  + +I+DES 
Sbjct: 242 RGRIVMRAKAEI-EAAKDREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIKDESN 300

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   +++   R  +  +++ ++F  + ++T F +N   L     PQ++ L  ++  ++ 
Sbjct: 301 KDGIRIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVK-GRPQLLNLRDLIHYFVE 359

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSL 423
           HR EV+ RR+ F +    +R  IL+GLLIA  ++DE+I +IR+ D     +  ++ +F L
Sbjct: 360 HRHEVVVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLMEKFGL 419

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q  AIL++ LR L  LE  +IK E + L+   E + S+L+   ++   I  E+ E+K
Sbjct: 420 SDIQARAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQSILDDESKRMQIIKDELTEMK 479

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           E +        RRTT      + +    +  IE E + + IS+ G+I+   +        
Sbjct: 480 EKYGDE-----RRTTIV---HSAEDMSMEDFIEDEEVVITISHEGYIKRTPATEYRTQGR 531

Query: 544 HF--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLL 593
                     +  D ++  L A   + +L  +  G+ + L    +  G    +  AIQ +
Sbjct: 532 GGKGSKGSDSRNEDFIEHLLIASNHNYMLFFTETGRCFWLRVYEIPEGTRLSKGRAIQNI 591

Query: 594 IDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           I++   + I                   +++ + KG                G   + ++
Sbjct: 592 INIPKEEKIKAFIKVKNLKDQEYLENNYIIMCTKKGTIKKTSLEAYSRPRVNGINAININ 651

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVIC 702
             +++      TG   + +   + + + F+ +++  M R   GVR  +   +      + 
Sbjct: 652 EGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPMGRTATGVRGVTLAHEKDEVVGMI 711

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                G T +  + + Y +  +     +  RGG G        ++G  ++
Sbjct: 712 AVDDPGATILVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTDKTGNLVA 761



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/476 (11%), Positives = 139/476 (29%), Gaps = 22/476 (4%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--AK 293
           R+ I             R ++ + E  + +   ++  +   +     + K+         
Sbjct: 351 RDLIHYFVEHRHEVVVRRTKFELAEAKKRAH--ILEGLLIALDHLDEVIKLIRSSDTPED 408

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
               L +    S    R +L    R L      +     +++        ++L       
Sbjct: 409 ARTGLMEKFGLSDIQARAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQSILDDESKRM 468

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            +  D + +    +  E                    + ++I   +   I      E + 
Sbjct: 469 QIIKDELTEMKEKYGDERRTTIVHSAEDMSMEDFIEDEEVVITISHEGYIKRTPATEYRT 528

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL-AEKEKIDSLLNSGKQQW 472
           +         ++++ +  +   L +                     E  +    S  +  
Sbjct: 529 QGRGGKGSKGSDSRNEDFIEHLLIASNHNYMLFFTETGRCFWLRVYEIPEGTRLSKGRAI 588

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             I    +E K          + +                     +  T+  ++      
Sbjct: 589 QNIINIPKEEKIKAFIKVKNLKDQEYLENNYIIMC---------TKKGTIKKTSLEAYSR 639

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
            + +   ++A++  EGD L  A     +  I++    G+A       +         ++ 
Sbjct: 640 PRVN--GINAININEGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPMGRTATGVRG 697

Query: 593 LIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-- 649
           +   +   ++V     D     +LVVS KG     +  +     R GK    ++  +K  
Sbjct: 698 VTLAHEKDEVVGMIAVDDPGATILVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTDKTG 757

Query: 650 -MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
            +  +  VT  D + ++ ++  ++   + ++  M R  +GVRL + K       + 
Sbjct: 758 NLVAIKSVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDEIASVA 813



 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            IL++S  G        +       G+ ++ +   +   ++V          L++++  G
Sbjct: 719 TILVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTDKTGNLVAIKSVTDADDLMIINKSG 778

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
               +  SE+    R   G   + +   +++  V ++
Sbjct: 779 IVIRIVVSELRVMGRATQGVRLINLKGNDEIASVARI 815


>gi|240949001|ref|ZP_04753355.1| DNA gyrase subunit A [Actinobacillus minor NM305]
 gi|240296588|gb|EER47206.1| DNA gyrase subunit A [Actinobacillus minor NM305]
          Length = 885

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/819 (31%), Positives = 387/819 (47%), Gaps = 78/819 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I++ +ISIE+L+ +I GPDFPTG  I+  R+ I E+YR GRG  
Sbjct: 182 IPPHNLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGA-IINGRKGIEEAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I D S +   
Sbjct: 241 YVRAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRRE
Sbjct: 301 SIVIEVKRDAVAEVVLNHLYSLTQMQVTFGINMVALD-NGQPKVLNLKQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IR                      
Sbjct: 360 VVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V   ++ L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPEDLPEELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKA 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +L S ++    I  E+  VK  F           +         A     
Sbjct: 480 LLVEIGELLHILTSPERLMEVIREELERVKSEFGDERRTEITAASGDINIEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPVPNGEFSADKFIFMATASGTVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+  Q+  M R
Sbjct: 660 KVSLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETQVRGMGR 719

Query: 684 -GKGVRLQSYK----DGGISDVICFKICEGLT------------------------WIDS 714
              GVR            + DV    +    T                         +  
Sbjct: 720 VATGVRGIKLATTEISDEVEDVEIETVENEDTEETSSVNLTTDKVVSLVIPHTQGEILTV 779

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +        +  R   G +  K   R+GK +++
Sbjct: 780 TQNGYGKRTALSEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVV 654
              +V+  +  +  ++L V+  G       SE    +R  K  + +   E+    +  V 
Sbjct: 761 TDKVVSLVIPHTQGEILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERNGKVVAAVQ 820

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
               D + ++ +   L+   ++++  + R  +GVR+    D      +
Sbjct: 821 VEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTADDEHVVSL 868


>gi|227500981|ref|ZP_03931030.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
 gi|227216754|gb|EEI82152.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
          Length = 814

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/756 (32%), Positives = 412/756 (54%), Gaps = 29/756 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            +N+  + L   ++  YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD     +
Sbjct: 4   NQNIMNIDLESKMKSSYLEYSMSVIVARALPDVRDGLKPVHRRILYDMQLLGLDPNKPTR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD ++YD+LVRLAQ F  RYPL  GQGNFG+IDGD+AAA RYTE
Sbjct: 64  KSARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDAAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM+++A+ +L+ + +D VDF   ++EE+ EP V PS+FPNLL NG++GIAVGMAT++  
Sbjct: 124 VRMSKIAKEMLRDIGKDTVDFMPNFDEEELEPTVLPSRFPNLLVNGSNGIAVGMATNMAP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +A + +PEISI+ L+E I GPDFPTG  ++  +  I E+Y+ GRG  + R
Sbjct: 184 HNLGEAIDACIAYMKDPEISIDDLIEIIPGPDFPTGA-LILGKSGIKEAYKTGRGKIKQR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A   +E   +    I++TEIPYQV K+RLIEKIA+L+  KR+  + DIRDES      ++
Sbjct: 243 AVAKIEPFKKNRERIIITEIPYQVNKARLIEKIADLVKEKRVDGISDIRDESDRKGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +P++++ +++  + +E  F +    L     P+++ L  +++ ++ H++EV+ 
Sbjct: 303 VEIKRDSNPNIVLNNLYKYTQLENTFGIINLALV-AGEPKILNLKELIEYYVDHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDA 430
           RR++F +     R  I++GL+IA  +IDEII IIR+      +    +    LTE Q  A
Sbjct: 362 RRTTFDLSKARDRKHIVEGLIIAIDHIDEIIKIIRSSYDNDQIKKIFYDKFKLTEVQSQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  ++ +E D L    + + S+LNS +   N I  E+ E+KE ++   
Sbjct: 422 ILDMQLKRLSGLEIEKLNAENDELARMIDYLLSILNSEETLINLIIDEMTEIKEKYAD-- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT                + E+E I + ++  G+I+                ++A
Sbjct: 480 ---DRRTQIVPDEGE---IEISELFEREDILITLTKDGYIKRLPIDTYKVQNRGGKGIAA 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
            + KEGD +K  +  +T + +L  ++ GK ++L A  +        G+AI  +++L   +
Sbjct: 534 GNTKEGDFIKKIITTNTHEELLFFTSMGKVFSLEAYMIPEASRTSRGQAIINILNLESGE 593

Query: 601 DIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I             ++++ +  G     +        + G   + +   +K+  V ++ 
Sbjct: 594 RITEMMTLSDLHKNSQIVLQTKNGTIKKTDAENFANIRKNGIIAISLQENDKLISVRQID 653

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +  +N   + F+   +  M R  +GV+            +  K  E    +   
Sbjct: 654 KEEELLISTKNGMTIQFNSKDLRSMGRIAQGVKAIKLDKDDEVVSMNIK-GEETYLLVVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +Y +  +        RGG G    K   ++GK +
Sbjct: 713 ENAYGKKTSFNNFKNQNRGGKGVKCHKVTEKTGKVV 748


>gi|25026571|ref|NP_736625.1| DNA gyrase subunit A [Corynebacterium efficiens YS-314]
 gi|259508295|ref|ZP_05751195.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens
           YS-314]
 gi|23491850|dbj|BAC16825.1| putative DNA gyrase subunit A [Corynebacterium efficiens YS-314]
 gi|259164113|gb|EEW48667.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens
           YS-314]
          Length = 863

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/773 (29%), Positives = 398/773 (51%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ N    + ++ + +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G
Sbjct: 1   MSDDNNETFDRIQPIDINEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRVLYAMYDNG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                ++ KSA+ V + +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPDRSYVKSAKPVADTMGNYHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ V+F   Y+ + +EP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTTEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ +A   L++NP+      +EK +E++ GPDFPT G ++   + I +
Sbjct: 181 GMATNIPPHNLNELADAIFWLLENPDADEATALEKCMEFVKGPDFPTAG-LIIGDKGIHD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+PYQV    LI  IAE +   ++  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEEEG-NRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R   P +++ ++F  S +++ F  NM  +    VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVPRVVLNNLFKHSQLQSNFGANMLSIVD-GVPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+ ++AH+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     +      
Sbjct: 358 LRYYVAHQIEVIVRRTQYRLDQAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEARDGL 417

Query: 421 F---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + + Q DAIL ++LR L  LE  +I +EL+ L      +  +L S ++Q   +  
Sbjct: 418 MSLLDVDQIQADAILEMQLRRLAALEREKIVNELNELETIIADLKDILASPERQRAIVRD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+ E +        RR+       A     ++ +I +E + V I++ G+ +      
Sbjct: 478 ELAEIVEKYGDE-----RRSQII---AATGDVSEEDLIARENVVVTITSTGYAKRTKVDA 529

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
               K     +     K+ D ++    + T D IL  +  G+ Y L A  L        G
Sbjct: 530 YKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNFGRVYRLKAYELPEASRTARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ +++G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEERIAQVIQIQTYEDAPYLVLATAQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  +++     V  GD + +  E  + + F+ D   +  M R   GV+   +++G     
Sbjct: 650 NDGDRLIGAALVDEGDDILLTSEYGQAIRFTADDEQLRPMGRATAGVKGMRFREGDQLLA 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   + +G   + +    Y +           RGG+G +  K  P+ G+ + +
Sbjct: 710 MSV-VRDGEFLLVATSGGYGKRTPISEYSTQGRGGLGVVTFKYTPKRGRLIGA 761



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 50/147 (34%), Gaps = 6/147 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           D ILL S  G+A    A +      G   A    +       ++   V      LLV +S
Sbjct: 665 DDILLTSEYGQAIRFTADDEQLRPMGRATAGVKGMRFREGDQLLAMSVVRDGEFLLVATS 724

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI 675
            G       SE     R G   +         ++   + V   D +  +     ++   +
Sbjct: 725 GGYGKRTPISEYSTQGRGGLGVVTFKYTPKRGRLIGALAVEEDDEIFAITSAGGVIRTEV 784

Query: 676 DQIPEMSRGK-GVRLQSYKDGGISDVI 701
           +QI   SR   GVRL + +D      I
Sbjct: 785 NQIRPSSRATMGVRLVNLQDDVELLAI 811


>gi|209559434|ref|YP_002285906.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131]
 gi|209540635|gb|ACI61211.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131]
          Length = 828

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/753 (31%), Positives = 390/753 (51%), Gaps = 15/753 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNF ++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFCSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG  +V  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGA-LVMGRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ ++T F     +     VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRREASATVILNNLFKLTSLQTNFSF-NMLAIENGVPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 IIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKE 547
                        +   D    +  +I       +    +   R+ K     +       
Sbjct: 479 PRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNN 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  +   T D +L  +  G+ Y L A  +       +   I  L+ L   + I T 
Sbjct: 539 DDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTI 598

Query: 606 FVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                           + +G     E SE     + G   LK+   +++  V+  +G D 
Sbjct: 599 INARKEETAGKSFFFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDD 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +   +   + F+   I  M R   GVR    ++     V   +I +    +      +
Sbjct: 659 IIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDDRV-VGASRIRDNQEVLVITENGF 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +        RGG G       P++G+   
Sbjct: 718 GKRTSATDYPTKGRGGKGIKTANIIPKNGQLAG 750



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 5/123 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKM 650
           + L  +  +V A       ++LV++  G       ++     R GK       +    ++
Sbjct: 689 VKLREDDRVVGASRIRDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANIIPKNGQL 748

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             +V V G + + V+     ++  ++  I +  R   GV++                 E 
Sbjct: 749 AGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808

Query: 709 LTW 711
            + 
Sbjct: 809 SSI 811


>gi|305667582|ref|YP_003863869.1| DNA gyrase subunit A [Maribacter sp. HTCC2170]
 gi|88709632|gb|EAR01865.1| DNA gyrase A subunit [Maribacter sp. HTCC2170]
          Length = 844

 Score =  658 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/762 (32%), Positives = 405/762 (53%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A+ +L  +D+D VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKIADDMLADIDKDTVDHQLNFDDSLQEPTVLPTRVPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L+ +I  PDFPTGG I+   + + E++  GRG   +RA
Sbjct: 185 NLSEVVDGTVAYIDNNDIEIDELITHIKAPDFPTGG-IIYGYDGVKEAFHTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV +G  CI+VTEIPYQV K+ +I+K A+L+  K+I  +  IRDES      V++
Sbjct: 244 KAVIEEV-QGRECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRKGMRVVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L     PQ++ +  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNMLYKYTALQSSFSVNNIALV-NGRPQMLNVKEMIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IAIIR        +  ++ RF LTE Q  AI
Sbjct: 362 RTKYELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADQARENLMERFKLTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++SE + ++     +  +L+  +++   I  E+ EVK+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEVIKTIADLKDILDRKERRMQIIKDELLEVKDKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+   E++ A      + MI  E + + IS+ G+I+              V   A 
Sbjct: 480 ---RRS---EINFAGGDLSIEDMIPNEQVVITISHAGYIKRTPLSEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             +  D L+          +L  +  GK + +    +  G    +  AIQ LI++  +  
Sbjct: 534 STRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSRTSKGRAIQNLINIEQDDK 593

Query: 602 IVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +                   +++ + KG        +     + G   + +   +++   
Sbjct: 594 VKAFICTQDLKDEDYVNNHFVIMATKKGTVKKTSLEQYSRPRQNGINAIGIRENDELLEA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
              TG   + +  ++ K + F   +   M R   GVR     D     +    +      
Sbjct: 654 KLTTGTSEIFLGLKSGKAIRFEESKTRPMGRNASGVRGIRLADDNDEVIGMVSVNNFEDN 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +   Y +  N     +  RGG G        ++G  +S
Sbjct: 714 ILVVSENGYGKRSNIDDYRVTNRGGKGVKTISITEKTGGLVS 755



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 70/195 (35%), Gaps = 6/195 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +      +  +     ++A+  +E D L  A     T  I L    GKA          
Sbjct: 622 TVKKTSLEQYSRPRQNGINAIGIRENDELLEAKLTTGTSEIFLGLKSGKAIRFEESKTRP 681

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
              +   ++ +   + N +++     ++    +LVVS  G        +     R GK  
Sbjct: 682 MGRNASGVRGIRLADDNDEVIGMVSVNNFEDNILVVSENGYGKRSNIDDYRVTNRGGKGV 741

Query: 642 LKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
             +S  EK   +  +  V+  D + ++ ++   +  S++ +  M R  +GV+L + K   
Sbjct: 742 KTISITEKTGGLVSIKNVSDADDLMIINKSGIAIRMSVEDLRVMGRATQGVKLINIKGAD 801

Query: 697 ISDVICFKICEGLTW 711
               +   + +    
Sbjct: 802 SIAAVAKVMKDDDAV 816


>gi|91214852|ref|ZP_01251825.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755]
 gi|91187279|gb|EAS73649.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755]
          Length = 840

 Score =  658 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/761 (31%), Positives = 400/761 (52%), Gaps = 26/761 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    + KK
Sbjct: 5   EQLIPINIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMQELGIFSNKSHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYQLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VDF   +++   EP V P++ PNLL NG SGIAVGMAT++  H
Sbjct: 125 RMKKISEEMLADIDKETVDFVFNFDDTIEEPTVLPTRVPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+     A I+N +I IE+L+ +I  PDFPTGG I+   E + +++  GRG   +RA
Sbjct: 185 NLSEVINGVNAYINNRDIEIEELMTHIKAPDFPTGG-IIYGYEGVRDAFMTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VEEV  G  CI++TEIPYQV K+ +I+K A+L+  K+I  +  IRDES  +   +++
Sbjct: 244 KSSVEEVN-GRECIIITEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +   P++++ ++F  + +++ F +N   L     PQ++ L  I+  ++ HR EV+ R
Sbjct: 303 ILKKDSLPNVVLNTLFKHTALQSTFSVNNIALVK-GRPQMLNLKDIIYNFVEHRHEVVIR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+I++IR      + +  +V RF L+E QV AI
Sbjct: 362 RTKYLLRKAEERAHILEGLIIASDNIDEVISLIRGSQNAEEAREKLVERFQLSEIQVKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++ E D L+   E +  +L+S  ++   I  E+ E+KE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRFEYDELMITIEDLKDILSSEDRRMEIIQTELLEIKEKYGDDRR 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                                 +       +  +     +      V   A   ++ D L
Sbjct: 482 SEINMVGGDFSMEDMIPNESVVLTISHAGYIKRTPLKEYKIQNRGGVGQKASTTRDEDFL 541

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD 609
           +          IL  +  GK + +    +  G    +  AIQ L++L+ +  I    + +
Sbjct: 542 EYIFSGTNHQYILFFTQKGKCFWMRVFEIPEGSKTSKGRAIQNLMNLDPDDRINAFILVE 601

Query: 610 --------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                   +   +L+V+ KG        +       G   + V   +++   V   G+  
Sbjct: 602 NLSNEDYINNHYVLMVTKKGQVKKTILEQYSRPRINGINAISVRDGDELLSAVLTDGENQ 661

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY--KDGGISDVICFKICEGLTWIDSAGR 717
           V +   + K L F    I  M RG  GV+  +   +   +  +IC K  +  T +  + +
Sbjct: 662 VMLGLRSGKALRFEEKHIRPMGRGAAGVKGITLASEKDEVIGMICVKNPQEETVLVVSEK 721

Query: 718 SYNRSENDLL------GWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +              +  RGG G        ++G+ ++
Sbjct: 722 GYGKRTFIDDVDGEPVYRITNRGGKGVKTISISEKTGQLVA 762



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 79/236 (33%), Gaps = 15/236 (6%)

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
              D          +S  D       ++  +   V  +        + +   ++A+  ++
Sbjct: 589 DPDDRINAFILVENLSNEDYINNHYVLMVTKKGQVKKTILEQYSRPRIN--GINAISVRD 646

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD L  A+     ++++L    GKA      ++         ++ +   +   +++    
Sbjct: 647 GDELLSAVLTDGENQVMLGLRSGKALRFEEKHIRPMGRGAAGVKGITLASEKDEVIGMIC 706

Query: 608 Y--DSTCKLLVVSSKGNAFIVEESE------IIANTRKGKTF--LKVSSEEKMKLVVKV- 656
                   +LVVS KG        +           R GK    + +S +    + +K  
Sbjct: 707 VKNPQEETVLVVSEKGYGKRTFIDDVDGEPVYRITNRGGKGVKTISISEKTGQLVAMKTV 766

Query: 657 -TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
              D + ++ ++   +  S+  I  M R  +GVRL S K       +   I E   
Sbjct: 767 HDEDDLMIIKKSGVAIRMSVSDIRTMGRSTQGVRLISLKGDDEIAAVAKIINEDED 822


>gi|116490132|ref|YP_809657.1| DNA gyrase subunit A [Oenococcus oeni PSU-1]
 gi|116090857|gb|ABJ56011.1| DNA gyrase subunit A [Oenococcus oeni PSU-1]
          Length = 866

 Score =  658 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/765 (30%), Positives = 390/765 (50%), Gaps = 18/765 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +   N+N   +  +K   L   +   +L+YA+S I  RA+PD+RDG KPVHRRI+  
Sbjct: 1   MADE--ENNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFG 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+      KKSARIVG+V+GK HPHGD ++Y+SLVR+AQPF  RYPL+ G GNFG+
Sbjct: 59  MNELGVTPDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEAR++++A  +L+ +++  VDF+ +Y+ ++ EPVV PS+FPNLL NG 
Sbjct: 119 VDGDPAAAMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGA 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP+HN++E+  A   L+ NP+ ++  L+E + GPDFPTG  IV  +  I 
Sbjct: 179 QGIAVGMATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGA-IVMGKSGIR 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   VR++  +E    G   I V+E+PY V K++LIE+I EL++ K++  +  
Sbjct: 238 RAYETGRGSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITA 297

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES ++   +     R  + ++++ +++  + ++T F  NM  ++    P+ M L  I
Sbjct: 298 IRDESDQNGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINH-GKPETMSLKQI 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L  +L H+RE++ RR+ F ++    R  IL+GL IA  +ID II +IR+ +     K  +
Sbjct: 357 LVAYLEHQREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNEL 416

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++R+ L++ Q  AIL++RL  L  LE  +I++E  +LL   E    +L   ++    I  
Sbjct: 417 INRYQLSDKQAQAILDMRLVRLTGLERGKIETEYTDLLKSIEDFKDILAKPERIDQIIYQ 476

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSH 536
           E+ ++   F        +      +   D    ++ +I       +   +     +    
Sbjct: 477 ELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVLISLTHKGYIKRLSTSEFHTQNRG 536

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  ++  + D ++  +   T D +L  S  GK Y +    +       +   +  L+
Sbjct: 537 GRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAKGIPVINLL 596

Query: 595 DLNHNQDIVTAFVYDST-----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            L+  + +                L   +  G       SE     + G   + +  ++ 
Sbjct: 597 GLDAGERVQAVINVRGDAATSKDFLFFTTKLGTVKRTAVSEFTNIRQLGLRAINLRDDDS 656

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +   +   + F+   +  M R   GVR  + +D          I  
Sbjct: 657 LISVLLTNGKQNIVIASHSGYAVSFAESDVRAMGRTASGVRGMNLRDKDYVVGADLLIP- 715

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           G   +    + Y +        +  RGG G        ++G    
Sbjct: 716 GDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKNGPLAG 760



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 81/232 (34%), Gaps = 8/232 (3%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           D G R      V      +        +  TV  +      +++   + L A++ ++ DS
Sbjct: 599 DAGERVQAVINVRGDAATSKDFLFFTTKLGTVKRTAVSEFTNIR--QLGLRAINLRDDDS 656

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L   L  +    I++ S  G A +  A + +   G   +    ++L     +V A +   
Sbjct: 657 LISVLLTNGKQNIVIASHSGYAVSF-AESDVRAMGRTASGVRGMNLRDKDYVVGADLLIP 715

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGE 666
              +L+++ KG        E     R GK +    +   +     L V    + + +  +
Sbjct: 716 GDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKNGPLAGLAVVSGDEDIMITTD 775

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           +  ++ F+   +    R   GV +   ++G     +     E    I +  +
Sbjct: 776 SGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEKEEDEEIPATDQ 827


>gi|167856405|ref|ZP_02479129.1| DNA gyrase subunit A [Haemophilus parasuis 29755]
 gi|167852465|gb|EDS23755.1| DNA gyrase subunit A [Haemophilus parasuis 29755]
          Length = 888

 Score =  658 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/820 (30%), Positives = 388/820 (47%), Gaps = 79/820 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  +S+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M + G     
Sbjct: 2   SELAKDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT   I+  R+ I ++YR GRG  
Sbjct: 182 IPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAA-IINGRKGIEDAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  +  I D S +   
Sbjct: 241 YVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  I++ ++ HRRE
Sbjct: 301 SIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDH-GQPKIFNLKQIIEAFVMHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IRN                     
Sbjct: 360 VVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V   ++ L+E+Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPEDLASEFGVRDGQYYLSEDQARAILELRLHRLTGLEHEKIVDEYKE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +LNS ++    I  E+ ++K  F           +         A     
Sbjct: 480 LLVEISELLHILNSSERLMEVIREELEKIKAEFGDERRTEITAASGDINLEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSCGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKGENERITAILPVPNGEFSADKFIFMATASGTVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+   +  M R
Sbjct: 660 KVSLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVRGMGR 719

Query: 684 -GKGVRLQSY-------KDGGISD---------------------VICFKICEGL-TWID 713
              GVR            D    D                     V+   I       + 
Sbjct: 720 VATGVRGIKLATTEISVDDAEEVDIETVENEEAEEASSVNLTTDKVVSLVIPHTQGEILT 779

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                Y +        +  R   G +  K   R+GK +++
Sbjct: 780 VTQNGYGKRTALGEYPVKSRATKGVVSIKVNERNGKVVAA 819



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 8/126 (6%)

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVV 654
              +V+  +  +  ++L V+  G        E    +R  K  + +   E+    +  V 
Sbjct: 762 TDKVVSLVIPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERNGKVVAAVQ 821

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKICEGLT 710
               D + ++ +   L+   ++++  + R  +GVR+    +         IC    +G+ 
Sbjct: 822 VEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIEDDGIE 881

Query: 711 WIDSAG 716
            +    
Sbjct: 882 NLSVEE 887


>gi|118602340|ref|YP_903555.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567279|gb|ABL02084.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 861

 Score =  658 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/792 (31%), Positives = 410/792 (51%), Gaps = 48/792 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           + + T  + N+  V++   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM  +G 
Sbjct: 5   TENPTHFKPNLPVVTIEDEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAMEVLGN 64

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  ++KKSARIVG+VIGK HPHGD +VYD++VR+AQPF  R  LI GQGNFG++DGDSA
Sbjct: 65  DYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSVDGDSA 124

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM +++  +L+ ++++ VDF D Y+  +SEP+V P++ PNLLANG+SGIAVG
Sbjct: 125 AAMRYTEIRMAKLSHELLRDLEKNTVDFIDNYDGSESEPLVLPTRVPNLLANGSSGIAVG 184

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ EA L  IDN +I+I++LLE + GPDFPT G I+     I ++Y  G
Sbjct: 185 MATNIPPHNLGEVIEACLKTIDNEDITIDELLEIMPGPDFPTAG-IINGASGIRQAYETG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +G   +R+   +E  G     IVVTE+PYQV K++LI KIA+L+  KRI  +  +RDES 
Sbjct: 244 KGKIYLRSVPHIEGEGEDKQSIVVTELPYQVNKAKLIGKIAKLVKDKRIDGITGLRDESD 303

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   ++    R   P++++ +++ L++M+T F +NM  +    +P++M L  IL+ ++A
Sbjct: 304 KDGMRMVIELRRGEVPEVMLNNLYKLTEMQTVFGINMVAIDK-GMPKLMTLKNILEAFIA 362

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------- 415
           HRR+V+ RRS F +        +L+GL +A  NID+II +I++                 
Sbjct: 363 HRRDVVTRRSIFDLNKARNHAHLLEGLAVALHNIDDIIELIKSASNSIDAKEVLVAKTWQ 422

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                       M   + L++ QV AIL+L+L  L  LE+ +I 
Sbjct: 423 GSVIKELIGDRDMVMFKPEDLPTELGLQMDGDYQLSQKQVQAILDLKLHRLTGLEKNKIF 482

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E + LL   + +  +L + ++    I  E+ +++  ++ +                   
Sbjct: 483 DEFNELLERIKYLLDILQTPERLMQVIREELIDIQSNYANARMTQILEHKIDLTLEDLIT 542

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
             ++ +       V   +    ++ +       A   K+ D +     A++ D +L  S+
Sbjct: 543 QERRVVTLSHGGYVKAQSLSDYQAQRRGGKGKVATKVKDEDFVDQLFIANSHDTVLCFSS 602

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    L        G+ I  L+ L   + I        +D    + +V+S G  
Sbjct: 603 LGKVYWLKVYELPMASRIARGKPIVNLLPLEKEEIINAILTVSKFDENHFVFMVTSSGTC 662

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMS 682
                +      + G   +++   +++  V   +G+H + +   N K + F    +  + 
Sbjct: 663 KKTVLTNFSKPRKGGIIAIELKDNDQLIGVEITSGEHDIMLFSANGKSIRFKESDVRVVG 722

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     +     V    + +    + +  + + +           RGG+G +  
Sbjct: 723 RTAIGVRGIKLANADKV-VSLIVVNQDNPILTTTEKGFGKRTRLNEYRSQARGGLGVISI 781

Query: 742 KGFPRSGKFLSS 753
           K   R+GK + +
Sbjct: 782 KTSDRNGKVVGA 793



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 65/213 (30%), Gaps = 6/213 (2%)

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            +              +   +     +            K     + A+  K+ D L   
Sbjct: 633 EKEEIINAILTVSKFDENHFVFMVTSSGTCKKTVLTNFSKPRKGGIIAIELKDNDQLIGV 692

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S +GK+      ++         ++  I L +   +V+  V +    +
Sbjct: 693 EITSGEHDIMLFSANGKSIRFKESDVRVVGRTAIGVRG-IKLANADKVVSLIVVNQDNPI 751

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  + KG       +E  +  R G   + + + ++    +  +     D + ++     L
Sbjct: 752 LTTTEKGFGKRTRLNEYRSQARGGLGVISIKTSDRNGKVVGAIQITDEDEMMLISNKGTL 811

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +      +  + R  +GV L +   G     I 
Sbjct: 812 VRARAVDVSIIGRNTQGVTLINIIKGEKLVSIA 844


>gi|237752402|ref|ZP_04582882.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375891|gb|EEO25982.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 825

 Score =  658 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/767 (35%), Positives = 423/767 (55%), Gaps = 32/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L ++ ++ V++  +++E YL Y++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 2   MSDLLNLNQD-IQNVNIEDSIKESYLDYSMSVIIGRALPDARDGLKPVHRRILYAMYELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGDS
Sbjct: 61  VTSRVAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMTQ AE +L+ +D+D VDF   Y++   EP + PS+ PNLL NG++GIAV
Sbjct: 121 AAAMRYTEARMTQAAEEVLRDIDKDTVDFLSNYDDTLQEPDILPSRLPNLLINGSNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H   EI +A + LIDNP+ S++++L+++ GPDFPTGG I+  +  I E+Y  
Sbjct: 181 GMATNIPPHRTDEIIDALVYLIDNPKASLDEILQFVEGPDFPTGG-IIYGKSGIREAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RA+  +E+       IV+ EIPYQV K+RL+E+IAEL   K I  + ++RDES
Sbjct: 240 GRGRIKIRAKTHIEKTKTK-DIIVIDEIPYQVNKARLVEQIAELAKEKVIDGIAEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  +F  + ME+ F + + +    + P+V  L  +L  +L
Sbjct: 299 DREGIRVVIELKREAMSEIVLNHLFKSTPMESTFGI-ILLAIYNKEPKVFTLLELLDLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
           +HR+ V+ RR+ F ++    R  IL+GL IA  NID I+A+IR    P   K  ++++FS
Sbjct: 358 SHRKSVVIRRTIFELEKAKARAHILEGLRIALENIDAIVALIRASSDPKVAKEGLITQFS 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I++E   LL E E + ++L S       I  E+ E+
Sbjct: 418 LSEIQAQAILDMRLQRLTGLERDKIENEYQALLKEIEHLSAILRSESLLNGIIKEELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE FS      +R TT  E   +      + +I  EP+ V +S+RG+++           
Sbjct: 478 KEKFST-----KRLTTIEEDYES---IDVEDLIPNEPVVVTMSHRGYVKRVPVRTYEKQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  + +  + D ++    + T D IL ++  G+ Y L    +        G+A+  
Sbjct: 530 RGGKGKISANTHDDDFIESFFVSDTHDTILFITDKGQLYWLKVYKIPEASRTAIGKAVVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI+L  ++ I+       ++S   L   +  G       SE       G   + +   + 
Sbjct: 590 LINLAPDEKIMATITTKDFNSNKSLAFFTKNGIIKRTNLSEFKNIRSVGVRAINLDENDA 649

Query: 650 MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKI 705
           +     ++ D   + VV      + F +D + E+ R  +GV    +K             
Sbjct: 650 LVTAKIISSDIKEILVVTYEGMCVRFGVDNVREIGRVARGVTAIKFKMPKDYVIGATVVA 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E    +  + +   +        +  RGG G +  K  P++GK + 
Sbjct: 710 SENEEILSVSEKGIGKRTEVNEYRITNRGGKGVIAMKLTPKTGKLVG 756


>gi|257388770|ref|YP_003178543.1| DNA gyrase subunit alpha [Halomicrobium mukohataei DSM 12286]
 gi|257171077|gb|ACV48836.1| DNA gyrase, A subunit [Halomicrobium mukohataei DSM 12286]
          Length = 819

 Score =  658 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/772 (32%), Positives = 404/772 (52%), Gaps = 33/772 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +     +      V  V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MSSEAPDPDDPQAASRVDRVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMG+   +A +KS+ IVGE +G  HPHGD ++YD+LVR+AQPF  RYPL+ GQGNFG+
Sbjct: 61  MHEMGVSSRSAHRKSSSIVGETMGDYHPHGDSAIYDTLVRMAQPFSMRYPLVDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM+ ++E +L  +++D VDF+  Y++   EP V PS  PNLL NG+
Sbjct: 121 MDGDPAAAMRYTEARMSPISEELLADIEKDTVDFQSNYDDRLREPEVLPSAMPNLLVNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGM+T+IP HN+ E+ +A + LIDNP+  +E L++++ GPDFPTGG IV  +++I 
Sbjct: 181 SGIAVGMSTNIPPHNLGEVIDATVHLIDNPDCEVEDLMDHVKGPDFPTGGNIV-GKDAIY 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG  RVRA + V         IVVTEIPYQ  K+R++E+IAE +    I  + D
Sbjct: 240 SAYATGRGRLRVRADYEV---DPEENRIVVTEIPYQENKARMVERIAEDVNEGVIEGIAD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   ++    R  + D++  +  + S +E+ F +    L     P+V+ L   
Sbjct: 297 LRDESDRNGVRIVVELKRGANVDVVE-NQLLESHLESTFGVINLALVDD-EPRVLTLKET 354

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           L+ ++AHR+EV+ RRS F +     R  IL+G L A  N+D+++ +I++ +         
Sbjct: 355 LEHYVAHRKEVVRRRSQFELDEAQDRAHILEGRLKALQNVDDVVELIQDSEDRDEARTEL 414

Query: 420 --RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             +F  +E Q   I+ ++L SL  +E  +I+SE +++ A  E++ ++L+S  +    I  
Sbjct: 415 RSQFDFSEEQAAHIVRMQLGSLTSMETAEIESEYEDVQARIERLQTILDSEDELLTVIKD 474

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+RE+K  +        R+T+  E   A+     + +I +E   VVI+   +I+ +   +
Sbjct: 475 ELREIKAEYDD-----DRKTSILE---AEGEVTHEDLIPEEDCVVVITEDDYIKRMPVDA 526

Query: 538 VDLSALH--------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HG 587
            D              K+GD +     A++ D +L  +  G+ Y L    +        G
Sbjct: 527 FDAQNRGGKGIIGSDPKDGDRVSKVFRANSHDYLLCFTNQGQVYRLKTYEIPEMSRTARG 586

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++   +IDL  +++I        ++    L +V+  G        E       G    K+
Sbjct: 587 KSAVNIIDLGDDEEITAVVSTDDFEEDECLTMVTRNGYVKRTCVDEFENILSTGIIAAKL 646

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              + +  V        + V  E    + F   ++ EM R  +GVR    +DG     + 
Sbjct: 647 EDGDALVDVEVTDDSGDLVVATEGGMTIRFDESEVREMGRSARGVRGIDLQDGDKVAAMV 706

Query: 703 FKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +    +      Y +           R G G +  K   R+G+  ++
Sbjct: 707 ATDDHDDRALLTVTENGYGKRTLLAEYSKQSRYGKGLIDIKTDDRNGRVATA 758



 Score = 84.1 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 52/487 (10%), Positives = 145/487 (29%), Gaps = 39/487 (8%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-IIAKR 294
           +E++       +   R R+++ ++E  +    I+   +        ++E I +     + 
Sbjct: 352 KETLEHYVAHRKEVVRRRSQFELDE-AQDRAHILEGRLKALQNVDDVVELIQDSEDRDEA 410

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
              L    D S E    ++  +  SL      E      D++ R      +L        
Sbjct: 411 RTELRSQFDFSEEQAAHIVRMQLGSLTSMETAEIESEYEDVQARIERLQTILDSEDELLT 470

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           +  D + +    +  +          +     +   +  ++     D I  +  +    +
Sbjct: 471 VIKDELREIKAEYDDDRKTSILEAEGEVTHEDLIPEEDCVVVITEDDYIKRMPVDAFDAQ 530

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL-AEKEKIDSLLNSGKQQWN 473
                    ++ +    ++   R+          ++         E  +    +  +   
Sbjct: 531 NRGGKGIIGSDPKDGDRVSKVFRANSHDYLLCFTNQGQVYRLKTYEIPEMSRTARGKSAV 590

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            I               ++    +T                 E++    +++  G+++  
Sbjct: 591 NIIDL--------GDDEEITAVVST--------------DDFEEDECLTMVTRNGYVKRT 628

Query: 534 KSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
                       + A   ++GD+L        +  +++ +  G         +       
Sbjct: 629 CVDEFENILSTGIIAAKLEDGDALVDVEVTDDSGDLVVATEGGMTIRFDESEVREMGRSA 688

Query: 588 EAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
             ++  IDL     +      D      LL V+  G       +E    +R GK  + + 
Sbjct: 689 RGVRG-IDLQDGDKVAAMVATDDHDDRALLTVTENGYGKRTLLAEYSKQSRYGKGLIDIK 747

Query: 646 SEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           ++++   V         DH+ ++ E+ +++      + ++ R  KGV++ +         
Sbjct: 748 TDDRNGRVATAKAVREDDHLVIMSESGQIMRIPAGDVSQVGRNTKGVKIMALDGVDNVAS 807

Query: 701 ICFKICE 707
           +     E
Sbjct: 808 VTVVPAE 814


>gi|118589189|ref|ZP_01546596.1| DNA gyrase subunit A [Stappia aggregata IAM 12614]
 gi|118438518|gb|EAV45152.1| DNA gyrase subunit A [Stappia aggregata IAM 12614]
          Length = 938

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/850 (30%), Positives = 415/850 (48%), Gaps = 107/850 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +   + S     +  ++K VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++
Sbjct: 4   LADQDNSTPTDGLPSDIKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 63

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G ++   ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG+
Sbjct: 64  MHENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGS 123

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTE R+ +VA  +L  +D++ VDF++ Y+  +SEPVV P+KFPNLL NG 
Sbjct: 124 VDGDPAAAMRYTECRLEKVAHKLLDDIDKETVDFQENYDNSESEPVVLPAKFPNLLVNGA 183

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +AA+A+++NP +S+E+L++ + GPDFPTGG+I+  R  I 
Sbjct: 184 GGIAVGMATNIPPHNLGEVIDAAIAVMENPAMSLEELMQIVPGPDFPTGGMIL-GRSGIR 242

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y   RG   +RA+  VEEV +    ++VTEIPYQV KS +IEKIAEL+  KRI  + D
Sbjct: 243 SAYETARGSIVMRAKVDVEEVRKDRTALIVTEIPYQVNKSTMIEKIAELVRDKRIEGISD 302

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES      V+    R   PD+++  ++  S ++T F  N+  L+ G  P+ M L  +
Sbjct: 303 IRDESDRSGMRVVIELKRDAVPDVILNQLYRFSQLQTSFGANIVALN-GGKPEQMNLSDM 361

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------- 412
           L+ +++ R EV+ RR+ + ++    R  IL GL IA  NIDE+I +IR            
Sbjct: 362 LRAFVSFREEVIQRRTRYLLKKARDRAHILVGLGIAVANIDEVIKLIRGAPDPATARAQL 421

Query: 413 ---------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L+E Q  AIL+LRL+ L  +   +I+ EL
Sbjct: 422 MERNWPAKDVESLILLIDDPRHMVQDDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEEL 481

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + + AE      +L S  +    +  E+ E+K+ F+       RRT   E         +
Sbjct: 482 NKIGAEISDYLEILRSRARIQEIVRNEMLEIKQEFATP-----RRTEIIE---GGPDFDE 533

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+I+          +      S +  K+ D +     A+T   +
Sbjct: 534 EDLIQREDMVVTVSHGGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPV 593

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G  Y +    L        G+A+  L+ L   + I +               ++
Sbjct: 594 LFFSSRGICYKMKVWRLPLGGPTSRGKALINLLPLEQGEQITSILPLPEDEDSWANLDVM 653

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
             + +G     + S+ +   R GK  +K+   + +  V   +  D V +     + + F 
Sbjct: 654 FATIRGTIRRNKLSDFVNINRNGKIAMKLEDGDGIVGVDTCSEHDDVMLTTNFGQCIRFP 713

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGIS---------------------------------- 698
           +  +     R   GVR     D                                      
Sbjct: 714 VTDVRVFAGRNSVGVRGIRLADEDRVISMQILHHIDVSAEERAAYLKLSRAMRGEADENG 773

Query: 699 ------DVICFKICEGLT---------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                  V+   + +             +  +   Y +  +     +  RGG G      
Sbjct: 774 NGADEEGVVAGDLPQERYAQMSAAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAV 833

Query: 744 FPRSGKFLSS 753
             R+G  +SS
Sbjct: 834 NSRNGGLISS 843


>gi|226225890|ref|YP_002759996.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27]
 gi|226089081|dbj|BAH37526.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27]
          Length = 837

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/754 (33%), Positives = 392/754 (51%), Gaps = 18/754 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +    +   ++E ++ Y++S I  RA+PD+RDG KPVHRR+++AM+E+GL  G A+KK
Sbjct: 8   ERILPRLIDEEVKESFINYSMSVIVSRALPDVRDGLKPVHRRVLYAMNELGLLPGRAYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA +VG+V+GK HPHGD SVYD+LVR+ Q F  RYPL+ GQGNFG++DGD+AAAYRYTEA
Sbjct: 68  SATVVGDVLGKYHPHGDSSVYDALVRMVQTFSLRYPLVDGQGNFGSMDGDNAAAYRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A  +L  +D++ VDF   +++   EP V P+ FPNLL NG++GIAVGMAT+IP H
Sbjct: 128 RLTRMAVEMLTDIDKNTVDFAPNFDDRLEEPRVLPAGFPNLLVNGSTGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A +ALIDNPE+    L + + GPDFPTGG I   R  I +    GRG   +RA
Sbjct: 188 NLREVISAVIALIDNPELDGPALRKLVKGPDFPTGGYIY-GRAGIADYQDTGRGRIIMRA 246

Query: 255 RWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +EE    G   IVVTE+PYQV K++L+  IAEL+  +++  +  +RDES +D   V+
Sbjct: 247 RAVIEEKESSGKSQIVVTEVPYQVNKAKLVADIAELVRDQKLTGISALRDESDKDGVRVV 306

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-----PQVMPLDGILKEWLAHR 368
               R   P +++  ++  + M++ F + M  L          P+V+ L   L+ ++AHR
Sbjct: 307 IELKRDAIPRVVLNQLYKHTAMQSTFGVIMLALVPDPHTRQLVPKVLTLRQCLEHYIAHR 366

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTE 425
            EV+ RR+ F +     R  IL+GL IA  NIDE+IA+IR           + SRF L+E
Sbjct: 367 HEVIVRRTQFDLDKALEREHILEGLKIAVDNIDEVIALIRAASDTPTASAQLQSRFGLSE 426

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RL  L  LE  +++ EL  + A   ++  +L S  ++ + +  E+ +V E 
Sbjct: 427 RQAEAILNMRLAKLTGLERDKLEEELVEVRAFILEMRGILESRDRRMSILKGELIQVAET 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +                     A  +  +       +  +               ++   
Sbjct: 487 YGDERRTEIVSDEGEFSIEDLIAEEEMVVTITHGGYIKRTPLSLYNRQGRGGRGKASADL 546

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KE D ++    A T   +L+ + DG+ + L    L        G+ I  LI++  +  I 
Sbjct: 547 KEHDFIERFYVASTHTYMLIFTDDGRCFWLKVHELPQAGRNTRGKPIVNLINVTPDTRIR 606

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
              V   +  T  LL  +  G       S+       G   +K+  ++++  V   +G +
Sbjct: 607 AIVVTKEFSDTEFLLFCTRNGTVKKTALSQYSNPRANGIKAIKIEQDDELMDVQVTSGNN 666

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +   +   + F    + EM R   GV+    +      V    I    T +    R 
Sbjct: 667 DVVLATRHGLSVRFHESDVREMGRDTTGVKGIELRPSD-QLVGMVVIKREATLLVVTERG 725

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +        + KRGG G L      ++G  ++
Sbjct: 726 LGKCSEVSEYRVQKRGGKGILTLNRTVKTGDVIA 759



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 6/191 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +      +     +  + A+  ++ D L         + ++L +  G +      ++  
Sbjct: 628 TVKKTALSQYSNPRANGIKAIKIEQDDELMDVQVTSGNNDVVLATRHGLSVRFHESDVRE 687

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   I+L  +  +V   V      LLVV+ +G     E SE     R GK  L
Sbjct: 688 MGRDTTGV-KGIELRPSDQLVGMVVIKREATLLVVTERGLGKCSEVSEYRVQKRGGKGIL 746

Query: 643 KV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            +     + + + L+  V  D + ++      +   + +I    R  +GV+L +  D   
Sbjct: 747 TLNRTVKTGDVIALMEVVPEDELMLMTRQGIAIRSKVSEIRVTGRAAQGVKLVALDDLDG 806

Query: 698 SDVICFKICEG 708
              +   I + 
Sbjct: 807 VSAVARVIPDD 817


>gi|148652682|ref|YP_001279775.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1]
 gi|148571766|gb|ABQ93825.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1]
          Length = 899

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/816 (30%), Positives = 401/816 (49%), Gaps = 85/816 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  +++   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM ++  D+   +
Sbjct: 1   MSDSVSPIAIVDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYP++ GQGNFG+ID D AAA RYT
Sbjct: 61  KKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++   +L  +D+D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EVRMTKLTHQMLGDLDKDTVDWEDNYDGSERMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  DNP IS E+L  YI GPDFPTGG I+  R  IV++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYADNPNISSEELTNYISGPDFPTGG-IIYGRSGIVDAYRTGKGRLHI 239

Query: 253 RARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E +      R    IV TEIPYQ  K++LIE+IAEL+  K+I  + +IRDES +
Sbjct: 240 RGRYHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   +     R    ++++ ++F+ + +E+ F +NM  L     P++M L  ++  ++ H
Sbjct: 300 DGMRIAIDLRRGEVAEVIVNNLFLQTPLESSFSINMVALD-NGQPKLMTLRQLIAAFVRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
           R+EV+ RR+ F +     R  +L+GL +A  NID+IIA I+                   
Sbjct: 359 RQEVVTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKESANRGEAREKLLAQIWDS 418

Query: 416 ----------------------------------------VMVSRFSLTENQVDAILNLR 435
                                                      + + L+  QV+AIL ++
Sbjct: 419 GTVVAMLQAAGRGTLAAGDLRSVRPEYIEGEDLKNPFGLIDQGNNYRLSLEQVNAILEMQ 478

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE+ ++  E  +LL +  +++S+L    +    I  E+ E+ E F        R
Sbjct: 479 LHRLTGLEQDKLTEEYQDLLRQIAELESILADFDKLMMVIKNEMLEILENFGDE-----R 533

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKE 547
           RT   +   +     ++ +I ++ + + +S  G+          + K      SA   KE
Sbjct: 534 RTDIVD---SRTDFSREDLIPEQTVVLTVSRTGYAKTQPISDYVAQKRGGKGKSATAMKE 590

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTA 605
            D +   +   T   +L  + +G+ ++L    +   S    G  +  +I L  ++ + T 
Sbjct: 591 DDVIDHLVVTSTHATVLCFTDNGRVFSLRGFEVPIASRGARGRPLVNIIGLEPDEIVTTI 650

Query: 606 FVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                      +  +   ++ G    VE S+       G   + +   +K+       G+
Sbjct: 651 LPIPNLSEEIDSHFVFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSARITNGE 710

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             V +   + K + F  +    M R  KGVR     +      +     +    + +   
Sbjct: 711 QQVMLFASSGKAIRFDENDARVMGRTAKGVRGMRIANDEFIKSLVVIEEDVQEILIACEN 770

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RGG G +  K   R+G  + +
Sbjct: 771 GYGKRTPVDEFNAQNRGGGGVIAIKTSERNGALVRA 806



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 67/195 (34%), Gaps = 10/195 (5%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  L A+  +EGD L  A   +   +++L ++ GKA      +        + ++ +
Sbjct: 684 NIRSNGLIAIGLEEGDKLVSARITNGEQQVMLFASSGKAIRFDENDARVMGRTAKGVRGM 743

Query: 594 IDLNHNQDIVTAFVYDST-CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEE 648
             + +++ I +  V +    ++L+    G        E  A  R G   + +     +  
Sbjct: 744 R-IANDEFIKSLVVIEEDVQEILIACENGYGKRTPVDEFNAQNRGGGGVIAIKTSERNGA 802

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKI- 705
            ++       D + ++     L+   + Q+    R  +GV L    KD  +  +   +  
Sbjct: 803 LVRATKVQPEDDIILISNKGTLVRTPVAQVATSGRNTQGVTLIRLSKDEALVAMARVEDT 862

Query: 706 -CEGLTWIDSAGRSY 719
             E            
Sbjct: 863 GEEDELVEAMIENGL 877


>gi|94987226|ref|YP_595159.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Lawsonia intracellularis PHE/MN1-00]
 gi|94731475|emb|CAJ54838.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Lawsonia intracellularis PHE/MN1-00]
          Length = 820

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/747 (33%), Positives = 400/747 (53%), Gaps = 15/747 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   + + YL Y+LS I  RAIPD+RDG KPVHRRI+ A  E+G  +    KK ARIV
Sbjct: 8   ISIEQEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELGNSYTRPPKKCARIV 67

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+LVR+AQ F  R PL  GQGNFG+IDGD+ AA RYTE RM+++
Sbjct: 68  GDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLEEGQGNFGSIDGDAPAAMRYTEVRMSRL 127

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L  +D++ VDFR  Y+    EP+V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 128 ASEFLSDIDKETVDFRPNYDNSLEEPIVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 187

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C A L +ID+P++ I+ LL  I GPDFPTGG I    + + ++Y  GRG  +VR +  +E
Sbjct: 188 CNALLKIIDDPDVPIDNLLNIIHGPDFPTGGFIYVG-QGLYDAYTKGRGTVKVRGKVEIE 246

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E  +G+  IV+ EIP+ + KS L+EKIA L+  ++I  + D+RDES      V+    + 
Sbjct: 247 ERKKGAQSIVIREIPFGLNKSSLVEKIAILVNERKIDGIADLRDESDRKGIRVVIELKKG 306

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           + P++++ +++  + +ET F +NM  +   R PQ++ +   L  +L HRREV+ RR+ F 
Sbjct: 307 VIPEIIINALYKFTPLETSFGINMLAVVDNR-PQLLTIKSALTYFLDHRREVIVRRTRFE 365

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNLRL 436
           +   + R+ IL GL+ A  +IDE++ +IR+   P      ++ RFSL+E Q  +IL++RL
Sbjct: 366 LNKAEARLHILIGLIHALDHIDEVVNLIRSSSTPAEAKIRLIERFSLSEIQAQSILDMRL 425

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  +++ E+  L  +    +S+L   K  W  I  E+  +KE+++        R
Sbjct: 426 QRLTGLEREKLEEEMHELQTKIAWYESILGDTKILWGVIRDEVTGIKEMYTTPRRTEVIR 485

Query: 497 TTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
            T   +   D       +I       +  +N    +  +     ++ LH  E D ++  +
Sbjct: 486 ETLTNIEIEDLIPDDDVVITLSRRGYIKRTNLAIYQQQRRGGKGVAGLHTSEDDFVQEFI 545

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDS 610
                  +LL +  G+ + L    +  G    +   I  ++ L   + + T      +  
Sbjct: 546 TTTNHQFLLLFTNKGRMHQLKVHQVPEGSRTAKGTHIANIVPLEKEEWVTTILTVREFSD 605

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRK 669
               L  + KG       S    + R G   + +  ++++ +V +VT +  + +      
Sbjct: 606 NKFFLFATRKGMVKRSSASYYARSRRTGLLAVGLREDDELIMVKEVTNNDFIVLATAEGF 665

Query: 670 LLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT--WIDSAGRSYNRSENDL 726
            + FS + +  M RG  GV+  + + G           +  T   +  +   Y +  +  
Sbjct: 666 AIRFSCEDVRNMGRGAAGVKGIALRPGDSVVACLILQEKQDTPAIMTVSNLGYGKRTSID 725

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           L  +  RGG G +  K   ++G  + +
Sbjct: 726 LYRVQTRGGKGIINFKVTQKTGLVIGA 752



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 73/224 (32%), Gaps = 17/224 (7%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E        L           +  + +G ++   +          L A+  +E D L 
Sbjct: 587 PLEKEEWVTTILTVREFSDNKFFLFATRKGMVKRSSASYYARSRRTGLLAVGLREDDELI 646

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           +       D I+L + +G A      ++ +      A    I L     +V   +     
Sbjct: 647 MVKEVTNNDFIVLATAEGFAIRFSCEDVRNMGRGA-AGVKGIALRPGDSVVACLILQEKQ 705

Query: 613 K---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGDH-VAVVG 665
               ++ VS+ G             TR GK  +          +     V+ D+ + ++ 
Sbjct: 706 DTPAIMTVSNLGYGKRTSIDLYRVQTRGGKGIINFKVTQKTGLVIGAKPVSDDNALVLLT 765

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
              K++  S+D++    R   GVRL    DG    V+ F   +G
Sbjct: 766 STNKIIRMSVDEVRSAGRATMGVRLVKLDDGAY--VVGFDTVDG 807


>gi|85716280|ref|ZP_01047254.1| DNA topoisomerase IV subunit A [Nitrobacter sp. Nb-311A]
 gi|85696952|gb|EAQ34836.1| DNA topoisomerase IV subunit A [Nitrobacter sp. Nb-311A]
          Length = 749

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/735 (55%), Positives = 536/735 (72%), Gaps = 1/735 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G+AFKKS
Sbjct: 12  EIHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGSAFKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEAR
Sbjct: 72  AKIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNIDGDNPAAYRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L G+DEDAV+FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN
Sbjct: 132 MTDVARLLLDGIDEDAVEFRPNYDGQSREPVVLPGGFPNLLANGAQGIAVGMATAIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LID P+   + LL+++ GPDFPTGGII++S+ESI ++Y  GRG FR RA+
Sbjct: 192 AAELCDAALHLIDKPDAKPKALLKWVKGPDFPTGGIIIDSKESIADAYTTGRGAFRTRAK 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E+  RG+W IVVT+IP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAED+R+V+ P
Sbjct: 252 WHREDGARGTWVIVVTQIPWLVQKSRLIEKIAELLNDKKLPLVGDIRDESAEDIRVVIEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++DP+L+MES+F L+++E+R  LN+NVL  GR+P+V+ L   L+EWL H R+VL RR
Sbjct: 312 KSRNVDPELVMESLFKLTELESRISLNLNVLIKGRIPKVVGLAECLREWLDHLRDVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S+ R   I+ R+E+L G LIAYLNID++I IIR ED+PKP ++  F LTE Q DAILN+R
Sbjct: 372 SAHRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPALIKAFKLTEVQADAILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE +I++E  NL AE + I+++L S  +QW ++  ++R V+++F   T LG+R
Sbjct: 432 LRSLRKLEEMEIRTEDKNLRAELKGINAVLGSEARQWEKVGEQVRNVRDMFGPKTPLGKR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +    D A L+++++E+EP+TVV+S++GW+R+LK H  DLS L FK  D L  A 
Sbjct: 492 RTVFADAPEHDLAALEESLVEREPVTVVVSDKGWVRTLKGHVEDLSNLSFKTDDKLGFAF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A TT ++LL +T+GK Y+L    L  GRGHGE I+L IDL  +  IV+ FV     K L
Sbjct: 552 LAETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQDAAIVSLFVNTGGRKFL 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           + S +G  F+V E + +  TRKGK  L V    + K +  V GD VAV+G N K++IF +
Sbjct: 612 IASHEGQGFVVNEDDCVGTTRKGKQVLSVEMPNEAKAITTVAGDQVAVIGTNHKMVIFPL 671

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           DQ+PEM+RG+GVRLQ Y+D G+SDV  F    GLTW DSAGR    S  DL  W G R  
Sbjct: 672 DQVPEMARGRGVRLQKYRDAGLSDVAVFDSKTGLTWRDSAGREQGLSWKDLSDWRGNRAD 731

Query: 736 VGSLVPKGFPRSGKF 750
            G L   G P+S KF
Sbjct: 732 AGRLAH-GLPKSNKF 745


>gi|325954972|ref|YP_004238632.1| DNA gyrase subunit alpha [Weeksella virosa DSM 16922]
 gi|323437590|gb|ADX68054.1| DNA gyrase, A subunit [Weeksella virosa DSM 16922]
          Length = 864

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/777 (29%), Positives = 403/777 (51%), Gaps = 45/777 (5%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N++       E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+
Sbjct: 2   NMTE-----GEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYEL 56

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+    A+KKSARIVGEV+GK HPHGD SVYD++VR+AQP+  RY L+ GQGNFG++DGD
Sbjct: 57  GVFSNRAYKKSARIVGEVLGKFHPHGDTSVYDTMVRMAQPWSLRYLLVDGQGNFGSVDGD 116

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+ ++++ +L  +D++ VDF+  +++   EP V P++ P LL NG SGIA
Sbjct: 117 QPAAMRYTEARLQKISDELLADIDKETVDFKLNFDDTIYEPTVLPTRIPTLLVNGASGIA 176

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++  HN+ E+ +  +A IDN +ISI++L ++I  PDFPTGG I+   + + +++ 
Sbjct: 177 VGMATNMAPHNLGEVIDGTVAYIDNRDISIDELSKHITAPDFPTGG-IIYGYDGVKQAFE 235

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+   EEV  G  CI+VTEIPYQV K+ +I K A+LI   ++  + +IRDE
Sbjct: 236 TGRGRVVMRAKANFEEV-HGRDCIIVTEIPYQVNKADMIAKTADLIKDGKLDGIAEIRDE 294

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      +++       P++++  ++  + +++ F +N   L     P+ + L  +++ +
Sbjct: 295 SDRQGMRIVYVLKMDAIPNVVLNQLYKFTQLQSSFSINNIALV-NGRPEQLNLKDMIRHF 353

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY------LNIDEIIAIIRNEDKPKPVMV 418
           + HR EV+ RR+ F ++    R  IL+G +             +II      +  +  ++
Sbjct: 354 VDHRHEVVVRRTEFELRKAQERAHILEGYMKVIGTQDDLDRAIKIIRESETPEIARESLM 413

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           + F L+E Q  AIL LRLR+L  LE  +I++E + ++   E + ++L+    +++ I  E
Sbjct: 414 TAFDLSEIQARAILELRLRTLTGLEIDKIRAEYEEIMKTIEYLKNILSDEDLRFSIIKEE 473

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK---- 534
           + E+K  ++       RR+   E+  +      + +I  + + + IS+ G+I+       
Sbjct: 474 LEEIKRKYADE-----RRS---EIDYSGGDLNIEDLIPDDNVVLTISHLGYIKRTPLTEY 525

Query: 535 ----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
                  V   A   ++ D L+  + A     +L  +  GK + L    +  G    +  
Sbjct: 526 KKQSRGGVGNRAATTRDEDFLEYIVVATNHQYMLFFTEKGKCFWLRVFEIPEGSKTSKGR 585

Query: 589 AIQLLIDLNHNQDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
           AIQ LI++  +  +    +              +++V+  G                G  
Sbjct: 586 AIQNLINIEPDDKVKAYILTHDLMDEEYVNNNYVIMVTKNGIIKKTSLEAYSRPRINGIN 645

Query: 641 FLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY---KDG 695
            + +  ++ +   +   G   + +  +  K + F  +++  M R   GVR  +    KD 
Sbjct: 646 AITIREDDTLLEALLTDGKSQIMIATKYGKAIRFEDEKVRPMGRTASGVRGINLGDDKDN 705

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +I     E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 706 EVIGMIVVSDMENETVLVVSEKGYGKRTSIEDYRETNRGGKGVTTLNITEKTGKLIA 762



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 7/117 (5%)

Query: 593 LIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
            +  + + +++   V        +LVVS KG        +     R GK    ++  EK 
Sbjct: 698 NLGDDKDNEVIGMIVVSDMENETVLVVSEKGYGKRTSIEDYRETNRGGKGVTTLNITEKT 757

Query: 650 --MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
             +  +  VT D  + ++ ++   +   + +I  M R  +GV+L + K       I 
Sbjct: 758 GKLIAIESVTDDNDLMIINKSGVAIRTGLSEIRVMGRATQGVKLINLKKNDEIAAIA 814



 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 2/100 (2%)

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
              + +L++S  G        +       G+ +  L        ++          L+++
Sbjct: 716 MENETVLVVSEKGYGKRTSIEDYRETNRGGKGVTTLNITEKTGKLIAIESVTDDNDLMII 775

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVK 655
           +  G A     SEI    R   G   + +   +++  + K
Sbjct: 776 NKSGVAIRTGLSEIRVMGRATQGVKLINLKKNDEIAAIAK 815


>gi|260432786|ref|ZP_05786757.1| DNA topoisomerase IV, A subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416614|gb|EEX09873.1| DNA topoisomerase IV, A subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 782

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/782 (50%), Positives = 519/782 (66%), Gaps = 37/782 (4%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            +D+ +     V   V    LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM
Sbjct: 4   TIDDPNMEAPGVGGEVAE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 62

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNI
Sbjct: 63  RELRLSSSGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 122

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD+ AA RYTEARMT VAE +L+G+DEDAVDFRD Y+    EPVV P+ FPNLLANG S
Sbjct: 123 DGDNPAASRYTEARMTIVAEALLEGLDEDAVDFRDNYDGTLREPVVLPATFPNLLANGAS 182

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+C+A L LI  P+   + LL Y+ GPDFPTGG+IVE  ESI +
Sbjct: 183 GIAVGMATNIPPHNIAELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGVIVEPPESIAQ 242

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG FR+R ++ +E++GRG W IVVTEIPYQVQKS+LIEK+AELI  K+IP+L D+
Sbjct: 243 AYRTGRGSFRLRCKYEIEDLGRGQWQIVVTEIPYQVQKSKLIEKLAELIQTKKIPILGDV 302

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDESA+D+R++L P+++++DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L
Sbjct: 303 RDESADDIRLILEPRSKNVDPEVLMNMLYRNSDLELRFSLNMNVLIDGVTPKVCSMKEVL 362

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + +L HR+EVL RRS  RM  ID R+E+L+G ++A+LN+D +I IIR +D PK  ++   
Sbjct: 363 RAFLDHRQEVLLRRSRHRMAKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDPKAALMREN 422

Query: 422 S----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  L+E QVDAILN+RLRSLR+LEE ++  E D L+ E+ 
Sbjct: 423 WGIDHVRATSEADYVSPKPGEGELSEVQVDAILNMRLRSLRRLEEMELVRERDALMEERA 482

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            ++ LL     QW  IA +++E K+ F K  + G RRT F E + A +    +AMI++EP
Sbjct: 483 GLEDLLADEGLQWASIAEQLKETKKKFGKDYEGGARRTRFAE-AGAVEEVPLEAMIDREP 541

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           ITVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+ +++G+ YT+ A N
Sbjct: 542 ITVVCSQMGWIRAMTGHIDLNRELKFKDGDGPRFIFHAETTDRLLIFASNGRVYTVSAAN 601

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L  GRG GE ++L++DL +   IV   ++    KLLV S  GN FIV E E++A TR GK
Sbjct: 602 LPGGRGMGEPLRLMVDLPNEAQIVDILIHKPGRKLLVASDAGNGFIVPEDEVLAQTRNGK 661

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------ 693
             L V  +E+  +   V GDHVAVV +N K L+F + ++PEM+RGKGVRLQ Y       
Sbjct: 662 QVLNVKDDERAVICKPVAGDHVAVVSQNGKFLVFPVSELPEMTRGKGVRLQKYNMARGRQ 721

Query: 694 -----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                DGG+SD+  F   EGL W  S G    R E D+  WL KR  VG   P GFPR  
Sbjct: 722 GTLELDGGLSDLTTFNWEEGLKW--SMGGDKTRHEPDMTPWLAKRASVGKKPPYGFPRDY 779

Query: 749 KF 750
           KF
Sbjct: 780 KF 781


>gi|149371419|ref|ZP_01890905.1| DNA gyrase A subunit [unidentified eubacterium SCB49]
 gi|149355557|gb|EDM44116.1| DNA gyrase A subunit [unidentified eubacterium SCB49]
          Length = 840

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/754 (30%), Positives = 392/754 (51%), Gaps = 19/754 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    A KK
Sbjct: 5   EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGIRATGAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMQRISEDMLADIDKETVDHQLNFDDTLMEPKVLPTRIPGLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA ID+ EI+I+ L+E+I  PDFPTGG I+   + + +++  GRG   +RA
Sbjct: 185 NLTEVVNGTLAYIDDDEITIDGLMEHIKAPDFPTGG-IIYGYDGVKDAFHTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G  CI+V+EIPYQV K+ +I+K A+L+  K+I  + +IRDES  +   +++
Sbjct: 244 KASFEEV-QGRECIIVSEIPYQVNKADMIKKTADLVNEKKIEGIANIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L     PQ++ L  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNTLYKYTALQSSFSVNNIALV-NGRPQLLNLKELIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+I +IR            +  F LTE Q  AI
Sbjct: 362 RTEYLLRKANERAHILEGLIIASDNIDEVIRLIRASANADEARAALIEAFKLTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E + L+        +L + +++ N I  E+ EV+  +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEELMKTIADYKDILANKERRMNIIKEELLEVQRKYGDDRR 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                              Q  +       +  ++    ++     V   A   +  D L
Sbjct: 482 SVIEYAGGDVSITDLIPDEQVVLTISHAGYIKRTSLTEYKTQNRGGVGQKASATRNEDFL 541

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD 609
           +          +L  +  GK + +    +  G    +  AIQ LI++  +  ++      
Sbjct: 542 EHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTSKGRAIQNLINIEPDDKVMAFICTQ 601

Query: 610 S--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                    +  +++ + KG        +       G   + +  ++++       GD  
Sbjct: 602 DLKDEEYVNSRYVIMATKKGQVKKTPLEQYSRPRTNGINAITIKDDDELLEAKLTRGDSQ 661

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRS 718
           V +  ++ K + F   +   M R   GVR     D     V    I +     +  + + 
Sbjct: 662 VMLAVKSGKAIRFEESKTRPMGRNASGVRGIRLADDNDEVVGMIAINDLESEILVVSDKG 721

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +     +  RGG G        ++G+ ++
Sbjct: 722 YGKRSSIEDYRITNRGGKGVKTINVTEKTGQLVA 755



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 69/184 (37%), Gaps = 6/184 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  +  ++A+  K+ D L  A       +++L    GKA             +   ++ +
Sbjct: 633 RPRTNGINAITIKDDDELLEAKLTRGDSQVMLAVKSGKAIRFEESKTRPMGRNASGVRGI 692

Query: 594 IDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKM 650
              + N ++V     +    ++LVVS KG        +     R GK    + V+ +   
Sbjct: 693 RLADDNDEVVGMIAINDLESEILVVSDKGYGKRSSIEDYRITNRGGKGVKTINVTEKTGQ 752

Query: 651 KLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE 707
            + +K  +  D + ++ ++   +   +  +  M R  +GVRL   ++      +   + +
Sbjct: 753 LVAIKNVIDSDDLMIINKSGIAIRMDVSSLRVMGRATQGVRLIKVREDDSIAAVAKVMKD 812

Query: 708 GLTW 711
               
Sbjct: 813 ENEV 816


>gi|261491600|ref|ZP_05988183.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261312726|gb|EEY13846.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 898

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/821 (30%), Positives = 386/821 (47%), Gaps = 81/821 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +  
Sbjct: 2   SELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I+N +IS+E+L+ YI GPDFPTG  I+  R+ I E+YR GRG  
Sbjct: 182 IPPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGA-IINGRKGIEEAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I D S +   
Sbjct: 241 YVRAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRRE
Sbjct: 301 SIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALD-NGQPKVLNLRQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IR     +                
Sbjct: 360 VVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V    + L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +L S ++    I  E+  VK  F+          +         A     
Sbjct: 480 LLTEIGELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   K+ D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKKDDFIEKLLVANTRDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+   +  M R
Sbjct: 660 KVSLDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAMGR 719

Query: 684 -GKGVRLQSYK------------------------------DGGISDVICFKICEGLTWI 712
              GVR                                   D      +     EG   +
Sbjct: 720 TATGVRGIKLSTTEISSEEIEEAEIIETDNEEAEDSSSVSLDKDRVVSLVIPRTEGD-IL 778

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 Y +        +  R   G +  K   R+GK +++
Sbjct: 779 TVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAA 819



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 47/138 (34%), Gaps = 8/138 (5%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLV 653
               +V+  +  +   +L V+  G       SE    +R  K  + +   E+    +  V
Sbjct: 761 DKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAAV 820

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKICEGL 709
                D + ++ +   L+   + ++  + R  +GVR+    +         +C    +  
Sbjct: 821 QVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPEDDEN 880

Query: 710 TWIDSAGRSYNRSENDLL 727
             +D+   +     +   
Sbjct: 881 ESLDALENAETVETSTEE 898


>gi|160941456|ref|ZP_02088791.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435602|gb|EDP13369.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC
           BAA-613]
          Length = 848

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/762 (31%), Positives = 394/762 (51%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF   ++E + EP+V PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFVPNFDETEREPLVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++EI  A + +IDN      E S+E+++E + GPDFPTG  I+  R  I E+YR GR  
Sbjct: 187 NLREIIGAVVKMIDNRVEEDRETSLEEIMEIVKGPDFPTGATIL-GRRGIEEAYRTGRAK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA   +E +  G   I+VTE+PY V K+RLIEKIA+L+  K+I  +  I DES  + 
Sbjct: 246 IKVRAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  +   + ++  F + M  L     P+V+ L  +L+E+L H+ 
Sbjct: 306 MRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALI-NNQPKVLNLHQMLEEYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  ILKGLLIA  NIDE+I IIR        K  ++ RF L++ 
Sbjct: 365 EVVTRRTQYDLNKAEERAHILKGLLIALDNIDEVIRIIRGAANVADAKNQLMERFGLSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L A+ E++ ++L   K+    I  EI  + + +
Sbjct: 425 QSQAIVDMRLRALTGLEREKLENEYRELQAKIEELKAILADEKKLLTVIRDEIMIISDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSV 538
                   RRT        D     + +I  E   + +++ G+I+ +             
Sbjct: 485 GD-----DRRTAI----GYDDDMSMEDLIPDEDTIIAMTHLGYIKRMDVDNFRSQNRGGK 535

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +  +   E D ++  L       ++  +  G+ Y L A  +        G AI  L+ L
Sbjct: 536 GIKGMQTIEEDYIEDLLMTTNHHYMMFFTNTGRVYRLKAYEIPEAGRTARGTAIINLLQL 595

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        ++    L + +  G        E     + G   + +   +++  V
Sbjct: 596 MPEEKITAIIPMREFNDDKYLFMATRNGMVKKTPMVEYEHVRKNGLQAIVLRDGDELIEV 655

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
                   + +V      + F+   +    R   GV    ++D      +  +  +G + 
Sbjct: 656 KATDNSQDILLVTRKGMCIRFNETDVRVTGRVSMGVIGMRFEDDDEVIGMQMQ-SQGDSL 714

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +     +           RGG G +  K   ++G  + +
Sbjct: 715 LVVSENGMGKRTMITEFSAQNRGGKGVICYKCTDKTGYLVGA 756



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 66/215 (30%), Gaps = 6/215 (2%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
            +       +       ++     +         L A+  ++GD L        +  ILL
Sbjct: 607 MREFNDDKYLFMATRNGMVKKTPMVEYEHVRKNGLQAIVLRDGDELIEVKATDNSQDILL 666

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
           ++  G        ++         +  +     + +++   +      LLVVS  G    
Sbjct: 667 VTRKGMCIRFNETDVRVTGRVSMGVIGMR-FEDDDEVIGMQMQSQGDSLLVVSENGMGKR 725

Query: 626 VEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM 681
              +E  A  R GK  +     +K   +     V  G  + ++     ++  ++D I  +
Sbjct: 726 TMITEFSAQNRGGKGVICYKCTDKTGYLVGAKLVNDGREIMIITTEGIIIRMTVDDISVI 785

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            R   GV+L S        V            DS 
Sbjct: 786 GRNTSGVKLMSIDQDSDIKVASIAKVRESVTKDSN 820


>gi|257465346|ref|ZP_05629717.1| DNA gyrase subunit A [Actinobacillus minor 202]
 gi|257451006|gb|EEV25049.1| DNA gyrase subunit A [Actinobacillus minor 202]
          Length = 885

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/819 (30%), Positives = 387/819 (47%), Gaps = 78/819 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I++ +ISIE+L+ +I GPDFPTG  I+  R+ I E+YR GRG  
Sbjct: 182 IPPHNLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGA-IINGRKGIEEAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I D S +   
Sbjct: 241 YVRAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRRE
Sbjct: 301 SIVIEVKRDAVAEVVLNHLYSLTQMQVTFGINMVALD-NGQPKVLNLKQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IR                      
Sbjct: 360 VVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V   ++ L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPEDLPAELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKA 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +L S ++    I  E+  VK  F           +         A     
Sbjct: 480 LLVEIGELLHILTSPERLMEVIREELERVKAEFGDERRTEITAASGDINIEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPVPNGEFSADKFIFMATASGTVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+  Q+  M R
Sbjct: 660 KVSLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETQVRGMGR 719

Query: 684 -GKGVRLQSY------KDGGISDVICFKICEGL----------------------TWIDS 714
              GVR           +    ++   +  +                          +  
Sbjct: 720 VATGVRGIKLATTEISDEVEDVEIETVENEDAEETSSVNLTTDKVVSLVIPHTQGEILTV 779

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +        +  R   G +  K   R+GK +++
Sbjct: 780 TQNGYGKRTALSEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVV 654
              +V+  +  +  ++L V+  G       SE    +R  K  + +   E+    +  V 
Sbjct: 761 TDKVVSLVIPHTQGEILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERNGKVVAAVQ 820

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
               D + ++ +   L+   ++++  + R  +GVR+    D      +
Sbjct: 821 VEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTADDEHVVSL 868


>gi|91206120|ref|YP_538475.1| DNA topoisomerase IV subunit A [Rickettsia bellii RML369-C]
 gi|123084545|sp|Q1RGX8|PARC_RICBR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|91069664|gb|ABE05386.1| Topoisomerase IV subunit A [Rickettsia bellii RML369-C]
          Length = 736

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/739 (50%), Positives = 534/739 (72%), Gaps = 4/739 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT++  L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTEICTLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LID+P+  I  ++ +I GPDFPTGGII++  + I  +Y  GRG FR
Sbjct: 181 PPHNLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRARW  EE+  G + IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRARWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  +L+E+L+HR+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI
Sbjct: 361 ITRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMQRFQLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIITEHSNLQKQQAILEEILNNPKELWKVVKKEIKAVQAKFGLNTT 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F +V+  ++     A I KEPIT++ S  GW+RSLK H+ DLS++ +KEGD+ 
Sbjct: 481 IGARRTSFEQVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNNDLSSIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIISSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITEILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD VA +GE+RKLL
Sbjct: 600 HLLLLASSIGKGFVVNSNEVMAQTKSGKQIMNVPDGHTCIACLPVNGDSVACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL+W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNREDGLSW---NSGGKVKLEKNIIAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           KRG  G L P GFP++ +F
Sbjct: 717 KRGSTGKLPPMGFPKNNRF 735


>gi|118574930|gb|ABL07042.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 860

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/764 (32%), Positives = 402/764 (52%), Gaps = 31/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V L  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ L  
Sbjct: 2   ENLFENQDIINVKLEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG++DGDSAAA
Sbjct: 62  KVAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A L LIDNP      L+E+I GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLDAILHLIDNPSSEAIDLMEFIQGPDFPTGGTIF-GRRGIIDAYNTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  + E       +V+ E+PYQV K+RLIE IA L   K+I  + ++RDES  D
Sbjct: 241 RVRIRAKHHI-ESKAKKDVVVIDELPYQVNKARLIELIANLAKDKQIEGIAEVRDESDRD 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKDAMAEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPEILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR          +   RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDTEAKDNLSSRFGLSS 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYAELMLLIAELEAILRSEEKLNEIIKEELNEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           FS             E+  +      + +I  EP+ V I++ G+            K   
Sbjct: 479 FSTPRKT--------EIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +        G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D +  L+  +  G       +E       G   + +   +++  
Sbjct: 591 LRADEKIMAIIPTPDFDESKSLVFFTRNGVIKRTSLNEFSNIRSNGVRAIVLDDTDEIVT 650

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEG 708
                    ++ +     + + F +++  +  R  +GVR   +K D  I         E 
Sbjct: 651 AKIADVQTQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDIVVDADVIDNEE 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  + +   +        L  R G G +  K  P++G  + 
Sbjct: 711 QEILTVSEKGIGKRTTIEEYRLTNRAGSGVIAMKLSPKTGNIVG 754



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 3/119 (2%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             IL +S  G                G  +  +       +IV   + D T  L++++S 
Sbjct: 711 QEILTVSEKGIGKRTTIEEYRLTNRAGSGVIAMKLSPKTGNIVGEVLVDDTQDLMLLTSI 770

Query: 621 GNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID 676
           G    V+ + I        G   + V S +K+  + K    D    + EN  ++ ++ D
Sbjct: 771 GKMIRVDVNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDENGNVIRYNED 829


>gi|297558992|ref|YP_003677966.1| DNA gyrase subunit alpha [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843440|gb|ADH65460.1| DNA gyrase, A subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 870

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/779 (30%), Positives = 388/779 (49%), Gaps = 37/779 (4%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+   +   V + ++ V ++  ++  YL YA+S I  RA+PD+RDG KPVH+R+++AM
Sbjct: 12  GGDSTVEAPPRVTDRIEPVDIQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHQRVLYAM 71

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G      + K AR+VG+V+G  HPHGD ++YD+LVRLAQ +  R PL+   GNFG+ 
Sbjct: 72  YDGGYRPDRGYFKCARVVGDVMGNYHPHGDSAIYDTLVRLAQWWSMRMPLVDPNGNFGSA 131

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D AAA RYTE ++  +A  +L+ +D+D VDFR  Y+   SEPVV P++FPNLL NG+S
Sbjct: 132 GNDPAAAMRYTECKLAPLAMEMLRDIDKDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSS 191

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN++E+ +     +DNPE   E+LL+     + GPDFPT G ++  + 
Sbjct: 192 GIAVGMATNIPPHNLREVADGVNWYLDNPEAQDEELLDALIARVKGPDFPTRG-LIVGKR 250

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I E+YR GRG   +RA   VEE  RG   +VVTE+PYQV    L  KIA+L+   +I  
Sbjct: 251 GIEEAYRTGRGSITMRAVVEVEEDKRGRQTLVVTELPYQVNPDNLALKIADLVKDGKITG 310

Query: 298 LEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + D+RDES+    + ++    R     +++ +++  + ++  F  NM  L    VP+ + 
Sbjct: 311 IADVRDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVD-GVPRTLR 369

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           LD +++ W+ H+ EV+ RR+ + ++  + R  IL+ LL A   IDE+I +IR        
Sbjct: 370 LDQMIRHWVKHQVEVIVRRTRYLLRKAEERAHILRALLRAMDRIDEVINLIRASASADQA 429

Query: 417 MVSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                    + + Q  AIL+++LR L  LE   + +E D L+A+    + +L S  +Q +
Sbjct: 430 RTGLMDLLEIDDIQARAILDMQLRKLAALERNALTAEYDELMAQIADYNDILESDTRQRS 489

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
            I  E+ E+ E +        RRT         +    +  I +E + V IS  G+ +  
Sbjct: 490 IIREELGEIVEKYGDE-----RRTHIIPFEGDMR---MEDFIAEEDVVVTISRGGYAKRT 541

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--G 583
                   K     +     K+ D ++      T + IL  +  G+ Y   A  L     
Sbjct: 542 RIDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHNWILCFTNQGRVYRTKAYELPEAAR 601

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+     ++I        Y++   L++ + +G        +  +    G  
Sbjct: 602 DARGQHVANLLPFQPGEEIAQIMALRDYEAAPYLVLATREGLVKKSRLEDFDSARAAGII 661

Query: 641 FLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQS-YKDG 695
            + +   +++     V   D + ++  + + + F      +  M R   GV      +D 
Sbjct: 662 AINLREGDELIAARLVFPDDDLLLISSDAQAIRFPASDESLRPMGRATSGVIGMRFLEDD 721

Query: 696 GISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +   +  +G T  + +    Y +        +  RGG G L  K     GK + +
Sbjct: 722 YLLSMDVIRPGDGSTDVLVTTENGYAKRTPSDQYPVQNRGGKGVLTAKVVEARGKLVGA 780



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 77/217 (35%), Gaps = 18/217 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +        +     E  P  V+ +  G ++  +           + A++ +EGD L 
Sbjct: 613 PFQPGEEIAQIMALRDYEAAPYLVLATREGLVKKSRLEDFDSARAAGIIAINLREGDELI 672

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-----IVTAFV 607
            A      D +LL+S+D +A   PA +    R  G A   +I +   +D     +     
Sbjct: 673 AARLVFPDDDLLLISSDAQAIRFPASDESL-RPMGRATSGVIGMRFLEDDYLLSMDVIRP 731

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTG--DHVA 662
            D +  +LV +  G A      +     R GK  L    V +  K+   + +    D V 
Sbjct: 732 GDGSTDVLVTTENGYAKRTPSDQYPVQNRGGKGVLTAKVVEARGKLVGALMIDPEVDEVF 791

Query: 663 VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
            +     ++    D++    R   GVRL +   G   
Sbjct: 792 AITSAGGVIRTGADEVKRSGRTTMGVRLMNLAKGNKI 828


>gi|237736254|ref|ZP_04566735.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817]
 gi|229421602|gb|EEO36649.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817]
          Length = 843

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/747 (31%), Positives = 399/747 (53%), Gaps = 15/747 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N+    +   ++E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+E+G+ F   +KK
Sbjct: 2   SNINNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMNELGMSFDKPYKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY ++VR+AQ F  RYPLISG GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYSTMVRMAQDFNYRYPLISGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++  +L+ +D++ +DFR  +++   EP V P+K PNLL NG +GIAVGMAT+IP H
Sbjct: 122 RMAKISNELLEDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE++   L+EYI GPDFPTGGII    + I ++Y  GRG  RVR 
Sbjct: 182 NLGEVVDGTLALIDNPELTPLDLMEYIKGPDFPTGGIID-GDKGIKDAYMTGRGKVRVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE+  G   I++ EIPYQ+ K+ LIEKIAEL+  K+I  + D+RDES  D   V+ 
Sbjct: 241 KIEIEELKNGKINIIIREIPYQLNKATLIEKIAELVKDKKIVGISDLRDESDRDGIRVVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  +D+++ F + M  L     P+V+ L  I++E++ HR EV+ R
Sbjct: 301 ELKKGEEPELILNKLYKYTDLQSTFGIIMLALV-NNTPRVLNLKQIIEEYIKHRFEVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAI 431
           R+ F +   ++R  IL+G  IA  NID II ++R           +V ++  T+ Q  AI
Sbjct: 360 RTQFNLDKAEKRAHILQGYRIALNNIDRIIELVRAATDGNQAREQLVEKYGFTDIQARAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  ++++E   +     ++  +L +  + +  +  E++E+K+ +     
Sbjct: 420 LDMKLQRLTGLERDKVEAEYQEIEKYISELREILANDSKIYEIMKTELQELKDKYDDDRR 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               +              +  +       V        ++ K     +++ +  E D +
Sbjct: 480 TVIEKERKEINPEDLIKDEEVILTFTNKGYVKRMELSKYKAQKRGGRGVASQNTVEDDFV 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI--QLLIDLNHNQDIVTAF--- 606
           +    A   D +++ +  G+ Y +    +              +I+L  ++ I       
Sbjct: 540 ENIESAMNLDTLMIFTNQGRVYNIKVYEIPETSKQSRGRLIGNIINLKTDEKIRAIIKTR 599

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
            + +  +++ V+  G       SE       G   +K+   + +  V  +     + + +
Sbjct: 600 DFSNENEVIFVTKDGTVKKTNLSEFKNINSSGLKAIKLKENDDIIYVGLIEDIVNEQLLI 659

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNR 721
             +    + FS +++    R   GV+  + ++G  +   +  K  E  + +      Y +
Sbjct: 660 ATQAGYSIRFSCEELRATGRDTMGVKGLTLREGDTVVSALLIKDIENSSILTITENGYGK 719

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSG 748
                   L  R G G +  +   ++G
Sbjct: 720 RTKIDEYPLQSRIGKGVINLRCSAKTG 746


>gi|46578421|ref|YP_009229.1| DNA gyrase subunit A [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601055|ref|YP_965455.1| DNA gyrase, A subunit [Desulfovibrio vulgaris DP4]
 gi|46447832|gb|AAS94488.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561284|gb|ABM27028.1| DNA gyrase subunit A [Desulfovibrio vulgaris DP4]
          Length = 856

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/767 (32%), Positives = 409/767 (53%), Gaps = 29/767 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           SN+        + +S+   L + YL Y+LS I  RAIPD+RDG KPVHRRI+ A  E+G 
Sbjct: 13  SNTTRQAVSEQQQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGN 72

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
            +    KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R PL+ GQGNFG+IDGD+A
Sbjct: 73  AYNRPHKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAA 132

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM+++A   +  ++++ VDFR  Y+    EPVV P++ PNLL NG++GIAVG
Sbjct: 133 AAMRYTEVRMSRLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVG 192

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+C A L L+D+   +I+ L++++ GPDFPTGG +    + +V++Y  G
Sbjct: 193 MATNIPPHNLGELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAG-QGLVDAYTTG 251

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG  +VR +  +EE  +G   IV+ EIPY + KS L+EKIA L+  +RI  + D+RDES 
Sbjct: 252 RGTVKVRGKVEIEERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESD 311

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                V+    R   PD+++ +++  + +E+ + +NM  +   R PQ++ L   L  +L 
Sbjct: 312 RKGIRVVIDLKRGTIPDIVVNALYKYTPLESSYGINMLAVVDNR-PQLLDLKSALSHFLE 370

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSL 423
           HRRE++ RR+ + ++  + R  IL+GL IA  NIDE++A+IR    P+     ++ RF L
Sbjct: 371 HRREIIIRRTRYDLRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQRFGL 430

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL++RL+ L  LE  ++  E   LL + E   S+L + +     +  E  E++
Sbjct: 431 SEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEIR 490

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           + ++      +RRT         +    + +I  + + + +S RG+I+          + 
Sbjct: 491 DTYAT-----KRRTEVL--MDELEGIAIEDLIPDDDVVITLSRRGYIKRTTLDNYQQQRR 543

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLL 593
               ++ LH  + D ++  L       +LL +  GK + L    +  G    +   I  L
Sbjct: 544 GGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVHIANL 603

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + L  ++ + T      +      L V+ +G       S      + G   + +  ++++
Sbjct: 604 LPLEKDEWVTTVLSVREFAEDRFFLFVTKRGMVKRSSASLYARARKGGLIAVGLRDDDEL 663

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            +V ++   DHV +       + F+   +  M R   GV+  +               + 
Sbjct: 664 IMVREIHNDDHVVLTTGGGMAIRFACPDVRPMGRSATGVKGVALSGDDRVVACAVLPGDD 723

Query: 709 LT--WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   +  +   Y +     L  L  RGG G    +  P++G  + +
Sbjct: 724 TSTEIMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTPKTGDVIGA 770



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 12/165 (7%)

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC-KLLV 616
            D  ++L+T G      A   +   G        + L+ +  +V       D T  +++ 
Sbjct: 671 NDDHVVLTTGGGMAIRFACPDVRPMGRSATGVKGVALSGDDRVVACAVLPGDDTSTEIMS 730

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDH-VAVVGENRKLL 671
           +SS G             +R GK          + + +   + V  D  + ++    K++
Sbjct: 731 ISSNGYGKRTRIELYRLQSRGGKGVKNFRVTPKTGD-VIGAMPVRDDEALVLLTSTNKII 789

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             S+D++  + R   GV L    +G I  V+ F   +    ++ +
Sbjct: 790 RMSVDEVRSVGRATMGVMLVRLDEGAI--VVGFDRVDEREVVEES 832


>gi|325288207|ref|YP_004264388.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271]
 gi|324963608|gb|ADY54387.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271]
          Length = 820

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/771 (32%), Positives = 403/771 (52%), Gaps = 39/771 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + E  V  + +   L++ +LAY++S I  RA+PD+RDG KPVHRRI++ M ++G+    
Sbjct: 2   DIFEGKVLPIDISDELKKSFLAYSMSVIASRALPDVRDGLKPVHRRILYTMHDLGMVPSK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++ KSAR+VG+ +GK HPHGD S+YD++VR+AQ F  RYPLI G GNFG++DGDSAAA R
Sbjct: 62  SYSKSARLVGDCMGKFHPHGDSSIYDAVVRMAQEFSSRYPLIDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE +M  +A  +L  +D+D VDF   Y+E++ EP V PSKFPNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVKMASLATYMLADIDKDTVDFGPNYDEKEKEPSVLPSKFPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLE--------YIIGPDFPTGGIIVESRESIVES 242
           IP HN+ E+ +    LID          +         I GPDFPT G ++   E I ++
Sbjct: 182 IPPHNLGEVIDGVNYLIDQQGAEAPDSDQEITEKLLKLIKGPDFPTAG-LLMGTEGIQKA 240

Query: 243 YRLGRGGFRVRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           Y  GRG  ++RA+  +E++       I+VTEIP+ V KSRLIEKIAEL+  K+I  + D+
Sbjct: 241 YTTGRGSVKIRAKAIIEKIEKNNKMQIIVTEIPFMVNKSRLIEKIAELVQEKKIDGITDL 300

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      ++    R ++P +++  ++  + ME  F +N+  L     P+ + L  +L
Sbjct: 301 RDESNRKGMRIVIELRRDVNPQIILNLLYKHTQMEESFGINLLALVD-GTPKTLTLKAML 359

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMV 418
           + ++AH++EV+ RR+ F ++       I++GL  A   IDE+I IIR+       +  ++
Sbjct: 360 EYFIAHQKEVIIRRTHFELKKAQDEAHIVEGLRKALDFIDEVIEIIRSSKNDETARERLM 419

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           +RF  +E Q  AIL++RLR L  LE  ++ ++   L  E     ++L S K     I  E
Sbjct: 420 TRFEFSERQSQAILDMRLRRLTGLEREKLDAQFQKLSDEIAYHLAVLQSDKMVREIIKTE 479

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           + E++  +        RR+     +        + +I  E + + ++++G+I+       
Sbjct: 480 LGEIRVKYDNP-----RRSII---TIDTTKMDIEDLIADEDVVITVTHKGYIKRLPLTTY 531

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
              +     ++ +   E D ++    A T   IL  ST GK Y L A  +       +  
Sbjct: 532 RSQRRGGRGVTGMSTGESDFVEKLFIASTHHFILFFSTKGKVYRLRAHAIPDAGRTAKGT 591

Query: 589 AIQLLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           A+  L++L+ ++ I   +    +     LL V+ KG        E     + G   L + 
Sbjct: 592 AMINLLNLSQDEKITATIAVKDFKDDSYLLTVTRKGIIKKTALEEYHTQRKDGLIALTLD 651

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVIC 702
            ++++  V +  G D + +   + K++ F  + +  M R  +GVR     K   +  V  
Sbjct: 652 DDDELIAVRQTKGKDDILLATPSGKIIRFPENDVRPMGRTARGVRGMKLGKKEYVVGVDV 711

Query: 703 FKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                + +  +      + +        +  RGG+G +  K   ++GK   
Sbjct: 712 IGGYDKDMELLTMTENGFAKRTRLDEFRIQNRGGMGVIGHKVNKKTGKLAG 762



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 9/188 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +I               L AL   + D L         D ILL +  GK    P  ++  
Sbjct: 628 IIKKTALEEYHTQRKDGLIALTLDDDDELIAVRQTKGKDDILLATPSGKIIRFPENDVRP 687

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                  ++ +  L   + +V   V   YD   +LL ++  G A      E     R G 
Sbjct: 688 MGRTARGVRGM-KLGKKEYVVGVDVIGGYDKDMELLTMTENGFAKRTRLDEFRIQNRGGM 746

Query: 640 TFL--KVSSE-EKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
             +  KV+ +  K+  + V  + + + V+ ++  ++   +  I    R  +GV      +
Sbjct: 747 GVIGHKVNKKTGKLAGIKVVTSEEELMVITDDGIVIRQEVSGISVQGRSAQGVTAMKTGE 806

Query: 695 GGISDVIC 702
                 + 
Sbjct: 807 DNKVVALA 814


>gi|46202307|ref|ZP_00208476.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 898

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/824 (32%), Positives = 412/824 (50%), Gaps = 88/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++      + ++  V++   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ AM+E G
Sbjct: 1   MTTLPASPQFDITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEAG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
             F   F+KSARIVG+V+GK HPHGD ++YD++VR+AQ F  R PL+ GQGNFG++DGD 
Sbjct: 61  YHFNKPFRKSARIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ + A  +L+ +D++ VDF+  Y+E   EP+V P+++PNLL NG  GIAV
Sbjct: 121 PAAMRYTEARLAKSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  A ID+PE+++E+L+E + GPDFPTGG I+  R  I  +   
Sbjct: 181 GMATNIPPHNLGEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTIL-GRAGIRAAQLT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +EEV +    I+VTEIPYQV K+R++E+IAEL+  K+I  + D+RDES
Sbjct: 240 GRGSVVMRGRVHIEEVRKDREAIIVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R    ++++  ++  + ++T F +N   L+ G  P++M L  I+  ++
Sbjct: 300 DRDGVRVVIEIKRDAIAEVVLAQLYRFTPLQTSFGVNSLALN-GGRPEMMTLRDIIVAFI 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------ 419
           A R EV+ RR+ F +     R  +L GL IA  NIDE+I +IR    P            
Sbjct: 359 AFREEVITRRTIFELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEARERLMTRAW 418

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q  AIL+LRL  L  LE  +I  EL  +  +
Sbjct: 419 PVGDVEPLIQLIDEPGRAIEDGCYRLSEIQAKAILDLRLHRLTGLERDKIGDELREIGHQ 478

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E    +L+S  + +  +  E+ E++E F+       RRTT  E          + +I +
Sbjct: 479 IEAYLLILSSRPRLFEVMRGELMEIREQFATP-----RRTTIEENEFE---ADIEDLIAR 530

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V ++N G+I+          K      S ++ K+ D L      +T   +L  S+ 
Sbjct: 531 EDMVVTVTNTGYIKRVPLSAYRAQKRGGKGRSGMNIKDEDFLSQVFVVNTHTPVLFFSST 590

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKG 621
           G AY L    L   + +  G+A+  L+ L+  + I T               ++ V+SKG
Sbjct: 591 GIAYKLKVYRLPLGNPQARGKAMVNLLPLDEGETISTIMPLPEDETSWGDLHVMFVTSKG 650

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIP 679
           +      S+       GK  +K+   E++  V       D V +     K + F +  + 
Sbjct: 651 DVRRNPLSDFTEVRANGKIAMKLGEGERLISVQTCAAETDDVLLATHLGKAIRFPVHDVR 710

Query: 680 E-MSR-GKGVRLQSYKDGGISDVICFKI----------------------------CEGL 709
           E  SR   GVR       G  +VI   I                             E  
Sbjct: 711 EFKSRDSTGVRGIRL--DGEDEVISMSILRHTDYDSETRDAFLKGDLPAEQMEKMGAEQQ 768

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      + +  +     +  RGG G        ++G  ++S
Sbjct: 769 FVLTVTENGFGKRTSAFEYRITGRGGSGIANLDMTAKTGTVVAS 812



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 59/247 (23%), Gaps = 35/247 (14%)

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
              +         E   +        +  K  +     +                   + 
Sbjct: 620 DEGETISTIMPLPEDETSWGDLHVMFVTSKGDVRRNPLSDFTEVRANGKIAMKLGEGERL 679

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF- 606
                    A  TD +LL +  GKA   P  ++   +         I L+   ++++   
Sbjct: 680 ISVQT---CAAETDDVLLATHLGKAIRFPVHDVREFKSRDSTGVRGIRLDGEDEVISMSI 736

Query: 607 --------------------------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                                     +      +L V+  G        E     R G  
Sbjct: 737 LRHTDYDSETRDAFLKGDLPAEQMEKMGAEQQFVLTVTENGFGKRTSAFEYRITGRGGSG 796

Query: 641 FLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              +    K   VV        D + +V +  KL+   +D I    R  +GV L    + 
Sbjct: 797 IANLDMTAKTGTVVASFPVNHEDDIMLVSDGGKLIRMPVDDIRIAGRKTQGVTLLRTAEN 856

Query: 696 GISDVIC 702
                  
Sbjct: 857 ERVVSAA 863


>gi|185178715|ref|ZP_02964532.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024419|ref|ZP_02997078.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518713|ref|ZP_03004135.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524146|ref|ZP_03004216.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867460|ref|ZP_03079464.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273444|ref|ZP_03205980.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225551039|ref|ZP_03771985.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184209314|gb|EDU06357.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018704|gb|EDU56744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188997709|gb|EDU66806.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659822|gb|EDX53202.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660936|gb|EDX54189.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249964|gb|EDY74744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225378854|gb|EEH01219.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 844

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/753 (34%), Positives = 405/753 (53%), Gaps = 27/753 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K  S+   +E  +L Y++S I  RA+PD+RDGFKPVHRR + A  E G+     +KKSA
Sbjct: 25  IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGDQ+VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR+
Sbjct: 85  RWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +D++ VDF   Y+  + EP V PS FPNLL NGT+GIAVGMAT+IP HN+
Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A  A   N +ISI +++E++ GPDFPTG  I      I+  +  GRG   +R+++
Sbjct: 205 TEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIY-GDSGIINYFNTGRGSVTIRSKY 263

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E++G+G   IVVTEIPY V K  LIEKI EL+  K+I  + D+RDES+ D   ++   
Sbjct: 264 EIEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEV 323

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R + P++L+  +F  + ++T F +N   L    VP V+ +  ++K +  H+ EVL RR+
Sbjct: 324 KRDVIPEVLLNKLFKTTALQTNFSVNNLALV-NGVPMVLNIKEMIKYYFEHQIEVLVRRT 382

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILN 433
            F ++    R+ I++GL+IA  NIDE+I II+           +++RF LTE Q  AIL 
Sbjct: 383 KFDLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIARFGLTELQTKAILE 442

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+L  L   ++K E ++LL   + ++ +L +  +Q N I   +  + E F       
Sbjct: 443 MRLRALTGLNIDKLKKEYEDLLLIIKDLEDILENYDRQVNIICENLDYLIEKFGDE---- 498

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT    +         + +I  E I V +S RG+ +          +   V +  L  
Sbjct: 499 -RRTEI--MYGVSSHIDDEDLIPVEDIVVTMSKRGYFKRLPIDTYKNQRRGGVGVQGLKT 555

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
            E D ++  L A+T   +L  S  G+ Y L    +  G    +       + +  ++ I+
Sbjct: 556 YEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSKGIPAINFLPIEKSESIL 615

Query: 604 TAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
           T    D      L   +SKG       S+  +    GK  + +   +K+  V++  G D 
Sbjct: 616 TILPIDNYEQGSLFFTTSKGIIKRANLSDFESIRANGKIAITLKEGDKLFSVMQTLGNDE 675

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +   N  ++ F+ +   EM R   GV+  + +D             G   +    +  
Sbjct: 676 VFIGASNGNVIRFNENDAREMGRIATGVKGINLEDDEYVVGTGLS-SHGEYVLAVGSKGL 734

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +     L KRG  G    K   R+G  +S
Sbjct: 735 GKLTDINDYRLTKRGAKGVNTLKVNDRTGNLVS 767



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 113/359 (31%), Gaps = 20/359 (5%)

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           E +      ++  I   ++ L          + +  +  + D    + V    +T ++  
Sbjct: 471 EDILENYDRQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVVTMSKRG 530

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
               L + + +      +  +      + +    L+ +        +  +  V  +    
Sbjct: 531 YFKRLPIDTYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSD-LGRVYRLRGHE 589

Query: 490 TDLGRRRTT--------FCEVSRADKATLQQAMIEKEPITVVISNR-----GWIRSLKSH 536
             LG R++           E S +    L     E+  +    S                
Sbjct: 590 VPLGSRQSKGIPAINFLPIEKSESILTILPIDNYEQGSLFFTTSKGIIKRANLSDFESIR 649

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           +    A+  KEGD L   +     D + + +++G        +          +   I+L
Sbjct: 650 ANGKIAITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREMGRIATGV-KGINL 708

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLV 653
             ++ +V   +      +L V SKG   + + ++     R  K    +   ++   +  +
Sbjct: 709 EDDEYVVGTGLSSHGEYVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVNDRTGNLVSI 768

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
             V   +   ++  + K++  SI  I  + R   GV+L S ++      I     E + 
Sbjct: 769 KVVNRDEEALIITTSGKVIRLSIQDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEID 827


>gi|171920662|ref|ZP_02931894.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209554572|ref|YP_002284501.1| DNA gyrase subunit A [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550915|ref|ZP_03771864.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|171903395|gb|EDT49684.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209542073|gb|ACI60302.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225380069|gb|EEH02431.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 844

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/753 (35%), Positives = 405/753 (53%), Gaps = 27/753 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K  S+   +E  +L Y++S I  RA+PD+RDGFKPVHRR + A  E G+     +KKSA
Sbjct: 25  IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGDQ+VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR+
Sbjct: 85  RWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +D++ VDF   Y+  + EP V PS FPNLL NGT+GIAVGMAT+IP HN+
Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A  A   N +ISI +++E++ GPDFPTG  I      I+  +  GRG   +R+++
Sbjct: 205 TEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIY-GDSGIINYFNTGRGSVTIRSKY 263

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E++G+G   IVVTEIPY V K  LIEKI EL+  K+I  + D+RDES+ D   ++   
Sbjct: 264 EIEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEV 323

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R + P++L+  +F  + ++T F +N   L    VP V+ +  ++K +  H+ EVL RR+
Sbjct: 324 KRDVIPEVLLNKLFKTTALQTNFSVNNLALV-NGVPMVLNIKEMIKYYFEHQIEVLVRRT 382

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILN 433
            F ++    R+ I++GL+IA  NIDE+I II+           +++RF LTE Q  AIL 
Sbjct: 383 KFDLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIARFGLTELQTKAILE 442

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+L  L   ++K E ++LL   E ++ +L +  +Q N I   +  + E F       
Sbjct: 443 MRLRALTGLNIDKLKKEYEDLLLIIEDLEDILENYDRQVNIICENLDYLIEKFGDE---- 498

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT    +         + +I  E I V +S RG+ +          +   V +  L  
Sbjct: 499 -RRTEI--MYGVSSHIDDEDLIPVEDIVVTMSKRGYFKRLPIDTYKNQRRGGVGVQGLKT 555

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
            E D ++  L A+T   +L  S  G+ Y L    +  G    +       + +  ++ I+
Sbjct: 556 YEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSKGIPAINFLPIEKSESIL 615

Query: 604 TAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
           T    D      L   +SKG       S+  +    GK  + +   +K+  V++  G D 
Sbjct: 616 TILPIDNYEQGSLFFTTSKGIIKRANLSDFESIRANGKIAITLKEGDKLFSVMQTLGNDE 675

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +   N  ++ F+ +   EM R   GV+  + +D             G   +    +  
Sbjct: 676 VFIGASNGNVIRFNENDAREMGRIATGVKGINLEDDEYVVGTGLS-SHGEYVLAVGSKGL 734

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +     L KRG  G    K   R+G  +S
Sbjct: 735 GKLTDINDYRLTKRGAKGVNTLKVNDRTGNLVS 767



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 113/359 (31%), Gaps = 20/359 (5%)

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           E +      ++  I   ++ L          + +  +  + D    + V    +T ++  
Sbjct: 471 EDILENYDRQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVVTMSKRG 530

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
               L + + +      +  +      + +    L+ +        +  +  V  +    
Sbjct: 531 YFKRLPIDTYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSD-LGRVYRLRGHE 589

Query: 490 TDLGRRRTT--------FCEVSRADKATLQQAMIEKEPITVVISNR-----GWIRSLKSH 536
             LG R++           E S +    L     E+  +    S                
Sbjct: 590 VPLGSRQSKGIPAINFLPIEKSESILTILPIDNYEQGSLFFTTSKGIIKRANLSDFESIR 649

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           +    A+  KEGD L   +     D + + +++G        +          +   I+L
Sbjct: 650 ANGKIAITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREMGRIATGV-KGINL 708

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLV 653
             ++ +V   +      +L V SKG   + + ++     R  K    +   ++   +  +
Sbjct: 709 EDDEYVVGTGLSSHGEYVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVNDRTGNLVSI 768

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
             V   +   ++  + K++  SI  I  + R   GV+L S ++      I     E + 
Sbjct: 769 KVVNRDEEALIITTSGKVIRLSIQDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEID 827


>gi|315650186|ref|ZP_07903261.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium
           saburreum DSM 3986]
 gi|315487543|gb|EFU77851.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium
           saburreum DSM 3986]
          Length = 824

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/753 (31%), Positives = 395/753 (52%), Gaps = 18/753 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +    + L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        +K
Sbjct: 7   DKFNEIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  +++D VDF   ++E + EP V PS+FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RLSKIAMEMLADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A + LIDN     + +I++++  I GPDFPTG  I+     I E+Y  GRG  
Sbjct: 187 NIKEVIDAVVRLIDNKIEDKDTTIDEIISIIKGPDFPTGANIL-GLRGIKEAYTTGRGKI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VRA   +E +  G   IVV+E+PY V K++LIEKIAEL+  KRI  + D+RDES  +  
Sbjct: 246 KVRAVTEIESMSNGKSRIVVSELPYLVNKAKLIEKIAELVKDKRIDGITDLRDESNREGM 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    + ++ ++++  ++  + ++  F +NM  L     P+V+ +  +L+ +LAH+ +
Sbjct: 306 RVVIELRKDVNANIILNRLYKHTQLQDTFGVNMLALVD-NQPKVLNILQMLQYYLAHQED 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQ 427
           V+ RR+ + +     R  IL+GLLIA  NIDEII IIR           ++ RF L++ Q
Sbjct: 365 VVTRRTKYELNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKRFGLSDVQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+++RLR+L  LE  +++SE + LLA+ E  + +L   K+    I  EI  V++ + 
Sbjct: 425 AQAIVDMRLRALTGLERERLESEYNELLAKIEYFEGILADEKKLLTLIKEEILVVEDKYK 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                G  +    E     +       + K    +   +             +  +   +
Sbjct: 485 DDRRTGFMQDDDMEDEDLIQKEDIIIAMTKL-GYIKRMSPDNFNVQNRGGKGIKGMQTID 543

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D ++  + + T + I   +  G+ YT+    +        G AI  L+ L  ++ I   
Sbjct: 544 DDFIEDIVMSTTHNDIYFFTNKGRVYTIKGYKIPEASRTARGIAIVNLLQLQPDEKISAI 603

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
              ++      L +V+  G     + +      + G   + ++ ++++  V    G D +
Sbjct: 604 IPSEAKSNDGYLFMVTKNGTIKKCQINLFDNIRKNGLAAINLTEDDELIEVKVTHGDDDL 663

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V +    +  +   I  + RG  GVR      G     +     +G   +  +   Y 
Sbjct: 664 IIVSKYGMCIRINDKDIRAVGRGATGVRGMRLNTGDEVIGMQLA-SQGEYLLLVSEYGYG 722

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +        +  RGG G +  K   ++GK + +
Sbjct: 723 KRTKISEFKVQNRGGKGIICYKDNEKTGKLVGA 755



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 7/176 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L+A++  E D L      H  D ++++S  G    +   ++ +       ++ +  LN 
Sbjct: 639 GLAAINLTEDDELIEVKVTHGDDDLIIVSKYGMCIRINDKDIRAVGRGATGVRGMR-LNT 697

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVK 655
             +++   +      LL+VS  G     + SE     R GK  +     EK   +     
Sbjct: 698 GDEVIGMQLASQGEYLLLVSEYGYGKRTKISEFKVQNRGGKGIICYKDNEKTGKLVGAKL 757

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEG 708
           V  D  + ++     ++   +  I  + R   GV+L +  ++         KI E 
Sbjct: 758 VNEDREILLITTEGIIIRIEVSGISILGRTASGVKLMNVDRESDTKIASIAKIREE 813


>gi|325269857|ref|ZP_08136467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella
           multiformis DSM 16608]
 gi|324987830|gb|EGC19803.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella
           multiformis DSM 16608]
          Length = 848

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/773 (28%), Positives = 386/773 (49%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNP+IS + L+E+I  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPDISTDGLMEFIPAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E       IVVTEIPY V K +LIE IA+L+   +I  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEI-ESDESHDKIVVTEIPYGVNKQQLIEYIADLVKEGKIEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALV-GGRPRLLSLRECIKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  IL+ L+ A  NIDE++ +IR    P     +   RF 
Sbjct: 358 EHRHDVTIRRARFDLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEERFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
             E Q  AI+++RL  L  L   Q+  E + L+   + +  +L++ ++    +  E++EV
Sbjct: 418 FDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILDNPERCKEVMKAELQEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           KE +        RRT              +     +P+ + IS+ G+I+           
Sbjct: 478 KEKYGD-----DRRTEIIPDEHE---FNAEDFYPNDPVVITISHLGYIKRTPLADFKEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
              V       ++ D  +    A     +L  +  G+ Y +   ++  G  + +  AIQ 
Sbjct: 530 RGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++ L+    +             +  +  ++  + +G                G   + +
Sbjct: 590 MLSLDPGDSVNAFLRIRGLDNEEFLDSHFVVFATKQGIVKKTSLRAYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISD 699
           +  +++  V    G + + +   N +   F   +I  M R   GVR     + G   +  
Sbjct: 650 NEGDEVVDVRLTNGKNELIMADRNGRACRFDESKIRSMGRVSTGVRGMRLDEDGQDEVVG 709

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +I        T +  +   Y +        L  RGG G        ++G+ ++
Sbjct: 710 MIVVNDPVNETVMVVSEEGYGKRSQVADYRLTNRGGKGVKTLNITDKTGRLVA 762



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 93/272 (34%), Gaps = 17/272 (6%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             + +  +           +  D        +   I   +           D        
Sbjct: 552 ATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQNMLSL------DPGDSVNAFLRI 605

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
             +   +       +   +   V  ++       +++   + A++  EGD +      + 
Sbjct: 606 RGLDNEEFLDSHFVVFATKQGIVKKTSLRAYSRPRTN--GVIAININEGDEVVDVRLTNG 663

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDS--TCKLLV 616
            + +++   +G+A       + S       ++ + +D +   ++V   V +      ++V
Sbjct: 664 KNELIMADRNGRACRFDESKIRSMGRVSTGVRGMRLDEDGQDEVVGMIVVNDPVNETVMV 723

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTG-DHVAVVGENRKLLI 672
           VS +G     + ++     R GK    ++  +   ++  +  VT  + + ++ ++  ++ 
Sbjct: 724 VSEEGYGKRSQVADYRLTNRGGKGVKTLNITDKTGRLVAIKNVTDANDLMIINKSGIVIR 783

Query: 673 FSIDQIPEMSRG-KGVRLQSY-KDGGISDVIC 702
            S+ +   M R  +GVRL +  K   +   +C
Sbjct: 784 MSVAECRVMGRATQGVRLINLAKKNDVIASVC 815


>gi|126739698|ref|ZP_01755390.1| DNA topoisomerase IV subunit A [Roseobacter sp. SK209-2-6]
 gi|126719344|gb|EBA16054.1| DNA topoisomerase IV subunit A [Roseobacter sp. SK209-2-6]
          Length = 781

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/777 (50%), Positives = 519/777 (66%), Gaps = 37/777 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +S    +  +    LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM+ + L
Sbjct: 8   PDSVKPQDGEILE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRL 66

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ 
Sbjct: 67  SSNGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNP 126

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEARMT VAE +L+G+ EDAVDFRD Y+   +EP V P+ FPN+LANG +GIAVG
Sbjct: 127 AASRYTEARMTFVAEAMLEGLSEDAVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVG 186

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +A + LI  P+   + LL Y+ GPDFPTGGIIVE +E+I ++Y  G
Sbjct: 187 MATNIPPHNIAELIDACVHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYSTG 246

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG FR+RA+  VE++GRG W IVVTEIPYQVQKS+LIEKIAELI  K++P+L D+RDESA
Sbjct: 247 RGSFRLRAKHEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDESA 306

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ED+RI+L PK++++DPD+LM  +F  SD+ETRF LNMNVL  G  P+V  +  +L+ +L 
Sbjct: 307 EDIRIILEPKSKNVDPDVLMNMMFRNSDLETRFSLNMNVLIDGVTPKVCSMKEVLRAFLD 366

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---- 422
           HRR+VL RRS  RM  ID R+E+L+G +IA+LN+D +I IIR ++ PK  ++        
Sbjct: 367 HRRDVLQRRSRHRMAKIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAALMREDWGQDH 426

Query: 423 ------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                             L+E Q +AILN+RLRSLRKLEE ++  E D L  E+  +  L
Sbjct: 427 PRAFSEAEYVSPAKGTGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLVEL 486

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L S + QW +I  ++RE K+ F K  + G RRT F E +   +    +AMI+KEPITVV 
Sbjct: 487 LGSEELQWTRITEQLRETKKQFGKDYEGGARRTLFAE-AGEVEEVPLEAMIDKEPITVVC 545

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           S  GW+R++  H      L FK+GD  +   HA TTDR+L+  ++G+ YTL A NL  GR
Sbjct: 546 SQMGWVRAMTGHIDLSRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANLPGGR 605

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G GE ++L++DL +  +IV   +++   +LLV S  GN FI  E EI+A TR GK  L V
Sbjct: 606 GMGEPVRLMVDLPNEAEIVDLLIHNPEGRLLVASDAGNGFICAEKEIVAQTRSGKQVLNV 665

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK----------- 693
             +++ K+ + V GDHVAVV EN K L+FS++++PE+SRGKGVRLQ Y            
Sbjct: 666 KDDDRAKICIPVQGDHVAVVSENGKFLVFSVEEMPELSRGKGVRLQKYNMARGKQGSLEL 725

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DGG+SDV  F   +GLTW    G    R E DL  WLGKR GVG   P GFPR+ KF
Sbjct: 726 DGGLSDVTTFNWDDGLTW--EMGGGKTRHETDLGQWLGKRAGVGKRPPYGFPRNYKF 780


>gi|307260747|ref|ZP_07542436.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869586|gb|EFN01374.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 896

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/820 (30%), Positives = 389/820 (47%), Gaps = 80/820 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I+N +ISIE+L+ +I GPDFPTG  I+  R+ I E+YR GRG  
Sbjct: 182 IPPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGA-IINGRKGIEEAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +   
Sbjct: 241 YVRAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRRE
Sbjct: 301 SIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPKVLNLKQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IRN                     
Sbjct: 360 VVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V   ++ L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKA 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +L+S ++    I  E+ +VK  F           +         A     
Sbjct: 480 LLTEIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+   +  M R
Sbjct: 660 KVSLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMGR 719

Query: 684 -GKGVRLQSYK-----------------------------DGGISDVICFKICEGLTWID 713
              GVR                                  D      +     EG   + 
Sbjct: 720 TATGVRGIKLATTEISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSLVIPRTEGD-ILT 778

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +        +  R   G +  K   R+GK +++
Sbjct: 779 VTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLV 653
               +V+  +  +   +L V+  G        E    +R  K  + +   E+    +  V
Sbjct: 760 DTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAV 819

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
                D + ++ +   L+   + ++  + R  +GVR+    D      +
Sbjct: 820 QVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSV 868


>gi|308271124|emb|CBX27733.1| DNA gyrase subunit A [uncultured Desulfobacterium sp.]
          Length = 808

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/760 (33%), Positives = 400/760 (52%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E +  +++   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+  D+   
Sbjct: 2   METEKLSEINIETEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRILYAMRELKNDWNKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD  AA RY
Sbjct: 62  YKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQSFSLRYLLVDGQGNFGSVDGDPPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+T++A+ +++ +D++ VD    Y+E  +EP + P+K P LL NG+SGIAVGMATSI
Sbjct: 122 TEIRLTRLAQEMMEDLDKETVDVVPNYDESLTEPSILPAKIPCLLINGSSGIAVGMATSI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA   LIDNP+I+ E+L++ + GPDFPT G I+  R  I ++Y  GRG  +
Sbjct: 182 PPHNLSEVAEAIKTLIDNPDITCEELIQIVPGPDFPTAG-IIHGRSGIYDAYSTGRGKVK 240

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           VRAR  VE +    S  IVVTE+PY V K+ LIEKIAELI  K+I  +  +RDES  +  
Sbjct: 241 VRARVMVETDKKNQSETIVVTELPYMVNKAGLIEKIAELIRDKQIEGVRYVRDESDREGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     +     +++  ++  + ME+ F +    +     P+V+ L  IL+ ++ HR++
Sbjct: 301 RIALGLKKDQMSKIIINHLYKHTRMESTFGIIFLAVV-NNRPEVLTLKQILEYFVLHRKD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQ 427
           ++ +R+ F ++  + R  IL+GL +A  NIDE+I +I+    P        SRF +T  Q
Sbjct: 360 IIIKRTKFELRKAEARAHILEGLKVAIDNIDEVILLIKTSKSPSEAKQSLISRFDMTPIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             A+L++RL+ L  LE  +I  E DNLL +  +   +L S     N I  E+ ++K  + 
Sbjct: 420 AQAVLDMRLQRLTGLEREKIIEEYDNLLKDIARYREILASETLVLNIIKDELTQIKNEYG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVD 539
                  RRT   +     +    + +I +E + V +S  G+I+                
Sbjct: 480 D-----LRRTEIID---ETENISIEDLIVEEDMVVTVSKDGYIKRTPASIYNSQSRGGKG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
            +A+  KE D + +   A T    L  +  GK Y     ++        G+AI  L++  
Sbjct: 532 KTAMMTKEEDFVSMLFVASTHHYFLFFTNQGKVYWCKVYDIPEAGRTSKGKAIVNLLNFA 591

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + + T      ++    +++ +  G     +          G   LK+   +++  V 
Sbjct: 592 EGEKLTTVLAVKDFEPGSFVIMATRSGQIKRTDIMAYSRPRAGGIKALKLDEGDELIAVR 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G  +V V     K + F    I    R   G+R      G    V    +  G T  
Sbjct: 652 ITDGTLNVFVCSAMGKSIRFHESDIRATGRVTGGIRGMRLAKGDRI-VGMEVLTHGQTLF 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +  +     + KRGG G +  K   R+G+ ++
Sbjct: 711 AVTENGFGKRTSIDEYPVHKRGGKGVICIKTSERNGQVVA 750



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           + L     IV   V      L  V+  G        E   + R GK  + + + E+   +
Sbjct: 689 MRLAKGDRIVGMEVLTHGQTLFAVTENGFGKRTSIDEYPVHKRGGKGVICIKTSERNGQV 748

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             ++ V   D + ++ ++ K++   I  I  +SR  +GV+L + ++     +   ++ E 
Sbjct: 749 VAILIVDEDDDLMLMADSGKIIRTPISGISVISRNTQGVKLIN-REATEKVIGAARLAEK 807

Query: 709 L 709
            
Sbjct: 808 D 808


>gi|172056051|ref|YP_001812511.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15]
 gi|171988572|gb|ACB59494.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15]
          Length = 886

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/800 (31%), Positives = 401/800 (50%), Gaps = 60/800 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +    +K +++   +   ++ YA+S I  RA+PD+RDG KP HRRI++AM+++G
Sbjct: 1   MSDQQGI----IKDINISQEMRTSFMDYAMSVIVARALPDVRDGLKPGHRRILYAMNDLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 57  IRADKPHKKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFSYRYELVDGHGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  I++ ++++ V+F+D Y+  + EP V PS+FPNLL NG+SGIAV
Sbjct: 117 AAAMRYTEARMSKIAMEIVRDINKNTVNFKDNYDGSEREPEVLPSRFPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+++I GPDFPT G I+  R  I  +Y  
Sbjct: 177 GMATNIPPHQLGEVIDGVLALSHNPDITISELMQHIPGPDFPTAGEIL-GRSGIRRAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +E+  +    I+VTE+PYQV K+RL+EKIA+L+  K+I  + D+RDES
Sbjct: 236 GRGSLIVRAKAEIEQTKKDRERIIVTELPYQVNKARLVEKIADLVREKKIEGITDLRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    R  +  +++ +++  + M+T F +NM  +     P+ + L  +L  +L
Sbjct: 296 DRRGMRVVMEIRRDANASVILNNLYKQTSMQTTFGVNMLAIVS-GRPRTLTLKEMLYHYL 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
            H++E++ RR+ F ++  + R  +L GL IA  ++DE+I IIR     D  +  ++ RF 
Sbjct: 355 EHQKEIVRRRTQFDLEKAEAREHLLAGLRIALDHLDEVIKIIRANRTADAAREQLMERFE 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I +E D ++A   ++  +L S +     I  E+ EV
Sbjct: 415 LSEKQSQAILDMRLQRLTGLEREKIDAEYDEIMALITELKRILESDEVLLELIRTELEEV 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE F+       R                  +       +        R+ +     +  
Sbjct: 475 KERFNDQRRTEIRMDHIEFEDEDLIPEKDIIITLTSSGYIKRLTTDSYRAQRRGGRGVQG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           +   + D +   L   T D IL  +  GK Y +    +       +   I  LI +  ++
Sbjct: 535 IGTNDADYVTRLLSCSTHDTILFFTNRGKVYRIRGYEVPEMSRTSKGVPIINLIQIERDE 594

Query: 601 DIVTAFVY----------------------------------------------DSTCKL 614
            + T                                                  D    L
Sbjct: 595 KVETMIPVNFKRYLEEQEAAEATENIIDVEVTAEDAPDGLEEPEEALDAEEVMQDEQKSL 654

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF 673
           + ++ KG       S      + G   +++  ++++  V    T D V  V    K + F
Sbjct: 655 IFMTRKGRVKRSPLSAYARINKNGLIAIRLFEDDELTSVRLASTEDEVFTVSNTGKAIRF 714

Query: 674 SIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
            I  +  M RG +GV+  +     I   +     E    +    + + +           
Sbjct: 715 PITNVRSMGRGARGVKAMNLSADAIVIGMELARDE-QDVLVITEKGFGKRTPMTEFRTQS 773

Query: 733 RGGVGSLVPKGFPRSGKFLS 752
           RGG G +  K   R G+ ++
Sbjct: 774 RGGKGLIASKVTDRVGQIVA 793



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 86/224 (38%), Gaps = 17/224 (7%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRIL 564
           ++ M +++   + ++ +G ++     +        L A+   E D L     A T D + 
Sbjct: 644 EEVMQDEQKSLIFMTRKGRVKRSPLSAYARINKNGLIAIRLFEDDELTSVRLASTEDEVF 703

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            +S  GKA   P  N+ S       +   ++L+ +  ++   +      +LV++ KG   
Sbjct: 704 TVSNTGKAIRFPITNVRSMGRGARGV-KAMNLSADAIVIGMELARDEQDVLVITEKGFGK 762

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPE 680
               +E    +R GK  +     +++  +V +      D + ++ E+  ++      I  
Sbjct: 763 RTPMTEFRTQSRGGKGLIASKVTDRVGQIVALRIVDVDDDIMIMTESGIVIRTDSQNISS 822

Query: 681 MSR-GKGVRLQSYKDGGISDVIC-----FKICEGLTWIDSAGRS 718
           + R  +GV++   ++G     +        + E    ++     
Sbjct: 823 VGRNAQGVKVIRIEEGDRVATVAKLKKEDAVEEEGIVLEEGETG 866


>gi|73916192|gb|AAZ92964.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 399/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT---ENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +          S     E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLYERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|73916160|gb|AAZ92948.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 399/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT---ENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +          S     E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLYERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|331004660|ref|ZP_08328122.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330409587|gb|EGG89027.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 824

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/753 (31%), Positives = 395/753 (52%), Gaps = 18/753 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +    + L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        +K
Sbjct: 7   DKFNEIDLKKTMEKSYIDYAMSVIAARALPDIRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y SLV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGSLVNMAQEWSMRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  +++D VDF   ++E + EP V P+++PNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RLSKIAMEMLADINKDTVDFAPNFDETEKEPTVMPARYPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+  A + +I+N     E SI+++L+ + GPDFPTG  I+   + I ++Y  GRG  
Sbjct: 187 NLSEVINAVVRIINNKIEEKETSIDEMLDIVKGPDFPTGAHIL-GIKGIRDAYTTGRGKI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VRA   +E +  G   IVVTE+PY V K++LIEKIAEL+  K++  + D+RDES  +  
Sbjct: 246 KVRAVSEIESMQNGKNRIVVTELPYLVNKAKLIEKIAELVKDKKVDGITDLRDESNREGM 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R ++ ++++  ++  + ++  F +NM  L     P+V+ +  +L+ +LAH+ +
Sbjct: 306 RVVIELRRDVNANVILNRLYKHTQLQETFGVNMLALV-NNQPKVLNILQMLEYYLAHQED 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQ 427
           V+ RR+ + +     R  IL+GLLIA  NIDEII IIR           ++ RF L++ Q
Sbjct: 365 VVTRRTKYDLNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKRFGLSDVQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+++RLR+L  LE  ++++E + LL++ E  +S+L   K+    I  EI  V+  + 
Sbjct: 425 AQAIVDMRLRALTGLERERLEAEYNELLSKIEYFESILADNKKLLGVIKEEILIVEGKYK 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                G  +    E     +       + K    +   +             +  +   +
Sbjct: 485 DDRRTGFIQDDEMEDEDLIQKEDIIIAMTKL-GYIKRMSPDNFNVQNRGGKGIKGMQTID 543

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D ++  + + T   I   +  G+ YT+    +        G AI  L+ L  ++ I   
Sbjct: 544 DDFIEDIVMSTTHKDIYFFTNKGRVYTIKGYKIPEASRTARGIAIVNLLQLQPDEKISAI 603

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
              ++      L +V+ KG       +      + G   + ++ ++++  V    G D +
Sbjct: 604 IPSEASSGEGYLFMVTKKGTIKKCRINLFDNIRKNGLAAINLTEDDELIEVKVTHGDDDL 663

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V +    +  +   I  M RG  GVR     +      +     +G   +  +   Y 
Sbjct: 664 IIVSKYGMCIRINDKDIRAMGRGATGVRGMRLNEADEVIGMQLA-SQGEYLLLVSEYGYG 722

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +        +  RGG G +  K   ++GK + +
Sbjct: 723 KRTKISEFKVQNRGGKGIICYKDNDKTGKLVGA 755



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 66/184 (35%), Gaps = 7/184 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L+A++  E D L      H  D ++++S  G    +   ++ +       ++ +  LN 
Sbjct: 639 GLAAINLTEDDELIEVKVTHGDDDLIIVSKYGMCIRINDKDIRAMGRGATGVRGMR-LNE 697

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVK 655
             +++   +      LL+VS  G     + SE     R GK  +     +K   +     
Sbjct: 698 ADEVIGMQLASQGEYLLLVSEYGYGKRTKISEFKVQNRGGKGIICYKDNDKTGKLVGAKL 757

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWI 712
           V  D  + ++     ++   +  I  + R   GV+L +  ++         K+ E     
Sbjct: 758 VNEDREILLITTEGIIIRIEVSGISVLGRAATGVKLMNIDRESDTKIASIAKVREEKNTE 817

Query: 713 DSAG 716
               
Sbjct: 818 SVEE 821


>gi|165975741|ref|YP_001651334.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|165875842|gb|ABY68890.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 896

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/820 (31%), Positives = 389/820 (47%), Gaps = 80/820 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I+N +I IE+L+ +I GPDFPTG  I+  R+ I E+YR GRG  
Sbjct: 182 IPPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGA-IINGRKGIEEAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +   
Sbjct: 241 YVRAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRRE
Sbjct: 301 SIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPKVLNLKQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IRN                     
Sbjct: 360 VVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V  S++ L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPEDLPENLGVRDSQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKA 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +L+S ++    I  E+ +VK  F           +         A     
Sbjct: 480 LLTEIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLIANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+   +  M R
Sbjct: 660 KVSLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMGR 719

Query: 684 -GKGVRLQSYK-----------------------------DGGISDVICFKICEGLTWID 713
              GVR                                  D      +     EG   + 
Sbjct: 720 TATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSLVIPRTEGD-ILT 778

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +        +  R   G +  K   R+GK +++
Sbjct: 779 VTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLV 653
               +V+  +  +   +L V+  G        E    +R  K  + +   E+    +  V
Sbjct: 760 DTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAV 819

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
                D + ++ +   L+   + ++  + R  +GVR+    D      +
Sbjct: 820 QVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSV 868


>gi|3220195|gb|AAC23563.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 -----KRRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                ++ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVEDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +           E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHVLLKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 750


>gi|303249555|ref|ZP_07335762.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307251818|ref|ZP_07533720.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302651629|gb|EFL81778.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860725|gb|EFM92736.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 896

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/820 (30%), Positives = 389/820 (47%), Gaps = 80/820 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I+N +ISIE+L+ +I GPDFPTG  I+  R+ I E+YR GRG  
Sbjct: 182 IPPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGA-IINGRKGIEEAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +   
Sbjct: 241 YVRAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRRE
Sbjct: 301 SIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPKVLNLKQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IRN                     
Sbjct: 360 VVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V   ++ L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKA 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +L+S ++    I  E+ +VK  F           +         A     
Sbjct: 480 LLTEIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+   +  M R
Sbjct: 660 KVSLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMGR 719

Query: 684 -GKGVRLQSYK-----------------------------DGGISDVICFKICEGLTWID 713
              GVR                                  D      +     EG   + 
Sbjct: 720 TATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSLVIPRTEGD-ILT 778

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +        +  R   G +  K   R+GK +++
Sbjct: 779 VTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLV 653
               +V+  +  +   +L V+  G        E    +R  K  + +   E+    +  V
Sbjct: 760 DTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAV 819

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
                D + ++ +   L+   + ++  + R  +GVR+    D      +
Sbjct: 820 QVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSV 868


>gi|15892020|ref|NP_359734.1| DNA topoisomerase IV subunit A [Rickettsia conorii str. Malish 7]
 gi|20139049|sp|Q92JH0|PARC_RICCN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|15619136|gb|AAL02635.1| topoisomerase IV subunit A [Rickettsia conorii str. Malish 7]
          Length = 738

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/739 (50%), Positives = 527/739 (71%), Gaps = 4/739 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  V+ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LI++P+  I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  R
Sbjct: 181 PPHNLHELCDALIHLINHPKAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +M+  F LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMEWFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           KRG  G L P GFP++ +F
Sbjct: 717 KRGSTGKLPPMGFPKNNRF 735


>gi|91202854|emb|CAJ72493.1| strongly similar to DNA gyrase subunit A, type II topoisomerase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 838

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/759 (33%), Positives = 403/759 (53%), Gaps = 28/759 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +EN+K + +   +++ YL+YA+S I  RA+PD RDG KP  RRI+ AM+++ L   A
Sbjct: 2   TERKENIKDLFIEEEMKDSYLSYAMSVIMSRALPDARDGLKPSQRRILVAMNDLNLSPRA 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K A+I G+  G  HPHG+Q VY +LVR+AQ F  RYPLI GQGNFG+IDGD  AA R
Sbjct: 62  KFRKCAKIAGDTTGNYHPHGEQVVYPTLVRMAQDFNYRYPLIQGQGNFGSIDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT V   I++ +++  VD+   Y++  +EPVV PSKFPNLL NG SGIAVGMATS
Sbjct: 122 YTEARMTDVTITIMEDLEKRTVDYTPNYDDTRTEPVVLPSKFPNLLCNGCSGIAVGMATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  EIC+    +IDNPE++IE+L+  I GPDFPTG  I      I E Y+ GRG  
Sbjct: 182 IPPHNTNEICDGIAMVIDNPEVTIEELMTVITGPDFPTGAQI-CGTSGIKEGYKTGRGTI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE    G   IVVTEIPYQ+ +  ++E+IA L+  + +  + D+R+ES     
Sbjct: 241 IVRAKAHVETSKTGRKSIVVTEIPYQLNRDNILERIALLVREELLKGISDVRNESDRHGS 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D ++++  ++  + ++  F + M  L   R P+ + L  +L  ++ HR+ 
Sbjct: 301 RLVIDLKKGEDEEVVLNQLYKHTKLQDTFSIIMIALVDNR-PETLNLKQMLICYIEHRKV 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQ 427
           V+ +R+ F ++    R  +L+GL IA  NID +I +I+  D          S FSL+E Q
Sbjct: 360 VIVKRTRFLLEKAQNRAHVLEGLKIALNNIDRVIELIKTSDTVDAARRGLISTFSLSEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL++RL+ L  LE+ +I +E + L A+ ++  S+L + K   + I  ++ E+KE F 
Sbjct: 420 ANAILDMRLQRLTGLEQGKIDAEYEKLCADIKEYQSILANEKLVLDIIKKDVAEIKEQFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                 +RRT       A     ++ +I +E +TV+IS+ G+I+          +     
Sbjct: 480 D-----KRRTEIV---GAVGDLEREDLITEENVTVIISHEGYIKRLPLSAYRKQQRGGKG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +     KEGD  +    A T D IL  +  GK Y L   ++       +  A+  L++L 
Sbjct: 532 VIGAEMKEGDFAEHLFVASTHDYILFFTDQGKVYWLKVYDVPQMGKITKGRALINLLELK 591

Query: 598 HNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
             +++ +          +L++ +S G              + G   + +   + +  V  
Sbjct: 592 EGENVTSFIPVRNFDDRQLVMATSHGIIKKTVLKAYGNPKKGGIIAINLDEGDTLIGVKL 651

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G   + +  E  K + FS + +  + R  +GV+    K+G     +   + +  + + 
Sbjct: 652 TNGKQDLILGTEQGKAVRFSEEDVRSVGRVSRGVKGIKLKNGDKVCGMVV-VDDESSLMT 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                + +  N        RGG G +  K   R+GK + 
Sbjct: 711 ICENGFGKRTNFEEYSAKNRGGQGVINIKTTERNGKVVG 749



 Score = 41.7 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 40/122 (32%), Gaps = 2/122 (1%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S  +  +  K GD +   +       ++ +  +G           +    G+ +  +   
Sbjct: 682 SRGVKGIKLKNGDKVCGMVVVDDESSLMTICENGFGKRTNFEEYSAKNRGGQGVINIKTT 741

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVV 654
             N  +V       T +L++++  G       + I    R   G     +   +K+  V 
Sbjct: 742 ERNGKVVGLLDVRETDELIMITKGGKIIRTPVNTIRIIGRNTQGVKLFDIGKADKLISVA 801

Query: 655 KV 656
           +V
Sbjct: 802 RV 803


>gi|313884304|ref|ZP_07818067.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620457|gb|EFR31883.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8]
          Length = 852

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/760 (30%), Positives = 394/760 (51%), Gaps = 16/760 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++     ++ + + VSL   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MTEIFDDIDRDYETVSLPDEMRNSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNEIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+++VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 61  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +L+ +++D +DF+D Y++E+ EPVV P++FPNLL NG SGIAV
Sbjct: 121 AAAMRYTEARMSKISVEMLRDINKDTIDFQDNYSQEEKEPVVLPARFPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+ NP++++++L+E + GPDFPTG  +V  +  I  +Y+ 
Sbjct: 181 GMATNIPPHNLGEVIDALDLLMKNPDVTVDELMEVLPGPDFPTGA-LVMGKSGIRRAYQT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VR++  +E++      IVVTEIPY V K+ L+++IA+L   KRI  +    DES
Sbjct: 240 GRGKILVRSKVDIEQLANDRERIVVTEIPYGVNKANLVKRIADLARDKRIEGITYANDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R     +++ +++  + M+  F  NM  +    VP+++ L  IL ++L
Sbjct: 300 GREGMRIVIEVRRDTSASVVLNNLYKYTPMQVSFGFNMLAIDK-GVPKILNLKEILSKYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H+ EV+ RR+ +  +  + R  IL+GL IA  +IDEII IIR+          +++R+ 
Sbjct: 359 DHQVEVIRRRTEYDKRKAENRAHILEGLRIALDHIDEIIHIIRSSQDGDIAKQELMNRYE 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +I+ E  +LL   +++  +L S ++ +  I  E+ E+
Sbjct: 419 LSDVQAQAILDMRLVRLTGLERDKIEKEYADLLDLIQRLTEILGSQERIFQIIEDELNEI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLS 541
           +  F  +           ++        +  +I       +    +            + 
Sbjct: 479 RTRFGDARRTELHIGEITDIEDESLIEEEDVLIALTNKGYIKRMTQDEFSVQNRGGRGVK 538

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   +GD ++  +   T D +L  +  GK Y      +       +   I  LI ++  
Sbjct: 539 GMGLGDGDHIQTLVSCSTHDTLLFFTNQGKVYEKRGFEIPEYGRTAKGLPIINLIKIDKG 598

Query: 600 QDIVTAFV-----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           +++           D    L  V+  G       SE       G   L +  ++ +  V+
Sbjct: 599 EEVKAMISISDQDTDHEKYLFFVTKTGTVKRTLSSEYYNIRNNGLIALNLKEDDSLVAVM 658

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           +  G+  + +       + F    +  M R   GVR    +D     V    + EG   +
Sbjct: 659 ETDGNKPIIIGTHEGNAISFLESDVRAMGRTATGVRGVRLRDDDYV-VGADIMVEGSDVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        +  RGG+G        +SGK   
Sbjct: 718 VITDKGYGKRTPVEQYSIKNRGGLGVKTSNISEKSGKLAG 757



 Score = 67.5 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 12/220 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVIS----NRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           EV      + Q    EK    V  +               +  L AL+ KE DSL   + 
Sbjct: 600 EVKAMISISDQDTDHEKYLFFVTKTGTVKRTLSSEYYNIRNNGLIALNLKEDDSLVAVME 659

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 I++ + +G A +    ++ +       ++  + L  +  +V A +      +LV
Sbjct: 660 TDGNKPIIIGTHEGNAISFLESDVRAMGRTATGVRG-VRLRDDDYVVGADIMVEGSDVLV 718

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           ++ KG        +     R G       +   S  K+  ++ V G + + V+      +
Sbjct: 719 ITDKGYGKRTPVEQYSIKNRGGLGVKTSNISEKSG-KLAGLLVVEGHEDILVMTNQGVAI 777

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
              ++ I + SR   GVR+       +   I   +     
Sbjct: 778 RMKVEGISQSSRATLGVRMIRLDQEAVVSSITTILESEED 817


>gi|229826858|ref|ZP_04452927.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC
           49176]
 gi|229788476|gb|EEP24590.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC
           49176]
          Length = 832

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/759 (30%), Positives = 373/759 (49%), Gaps = 18/759 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  + + +  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+     
Sbjct: 2   DENIFDRINEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMKELSNTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              +K ARIVG+ +GK HPHGD S+Y +LV LAQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQSWSTRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++++  +L  +++D VDF   ++E + EP V PS++PNLL NG SGIAVGMAT
Sbjct: 122 RYTEARLSKISVEMLSDIEKDTVDFIPNFDETEKEPTVLPSRYPNLLVNGASGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           +IP HN+ E+  A   +IDN      +  I+++L+ + GPDFPTG  I+  R  I E+YR
Sbjct: 182 NIPPHNLVEVINAVNKIIDNKVEEDRDTDIDEILQIVKGPDFPTGAHIL-GRAGIEEAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   VRA   +E +  G   IVVTE+PY V K+RLIE IA+++  KRI  + ++RDE
Sbjct: 241 TGRGKIIVRAVTDIEPMANGKNRIVVTELPYLVNKARLIEYIADMVKNKRIDGITELRDE 300

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   +     R ++P ++++ ++  + ++T F  NM  L     P VM L  +L  +
Sbjct: 301 SNRNGMRICIELRRDVNPHIILKKLYKHTQLQTTFGTNMLGLV-NNEPVVMNLKQMLGFY 359

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-- 422
           L H+  V+ RRS + +   + R  IL+GLL+A   IDE+I+IIR                
Sbjct: 360 LEHQENVVRRRSQYELNKAEERAHILQGLLMALDYIDEVISIIRGSKTTAEAKEKLIGRF 419

Query: 423 -LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L + Q  AI+++RLR+L  LE  +++ E D+L    +++  +L   K+    I  EI  
Sbjct: 420 SLDDVQAQAIVDMRLRALTGLEREKLQGEYDSLQERIKELKEILGDIKKLLGVIKEEINV 479

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           +++ +                +          +       +        +S       + 
Sbjct: 480 IRDKYGDERRSQIVADDSDITNDDLIPDENTVIAMTNMGYIKRMTTDNFKSQNRGGKGIK 539

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHN 599
            +   E D ++  L   T   IL  +  G+ Y L A  +        G A+  L+ L  +
Sbjct: 540 GMQTIEEDFIEDLLMTTTHHYILFFTNKGRVYRLKAYQIPEASRTARGTAMVNLLQLQPD 599

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + +          +   L + + +G       SE     + G   + +  ++ +  V   
Sbjct: 600 EQVKAVINIRKEKTDGYLFMATKRGIVKKTALSEYANIRKTGLQAINLREDDDLIEVKLT 659

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDS 714
             +  + +V +N   + F+   +    R   GV   +  D      +     +G   +  
Sbjct: 660 NNENDIFLVTKNGMCIRFNEKDVRPTGRTSMGVIGMTIDDTDEIVAMQL-DTQGAKLLIV 718

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +     +           RGG G    K   ++G  + +
Sbjct: 719 SENGLGKRTEISEFTTQHRGGKGVKCYKIVEKTGLVIGA 757



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 68/176 (38%), Gaps = 7/176 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A++ +E D L      +  + I L++ +G        ++         +  +  ++ 
Sbjct: 641 GLQAINLREDDDLIEVKLTNNENDIFLVTKNGMCIRFNEKDVRPTGRTSMGVIGM-TIDD 699

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKV 656
             +IV   +     KLL+VS  G     E SE     R GK     K+  +  + +  K 
Sbjct: 700 TDEIVAMQLDTQGAKLLIVSENGLGKRTEISEFTTQHRGGKGVKCYKIVEKTGLVIGAKS 759

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
               + + ++ +   ++  +++ I  + R   GV+L +  DG        K+ E  
Sbjct: 760 VNDNNEIMLITKAGIIIRMAVESISTLGRITSGVKLMNV-DGDNVIAKIAKVREDD 814



 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 42/416 (10%), Positives = 117/416 (28%), Gaps = 8/416 (1%)

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +R      E          + ++  Q      +  +  L   K     + +++   E  
Sbjct: 401 IIRGSKTTAEAKEKLIGRFSLDDVQAQAIVDMRLRALTGLEREKLQGEYDSLQERIKELK 460

Query: 310 RIVLFPKN---RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            I+   K       +   ++   +           + ++ +   +P    +  +      
Sbjct: 461 EILGDIKKLLGVIKEEINVIRDKYGDERRSQIVADDSDITNDDLIPDENTVIAMTNMGYI 520

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R      +S  R     + ++ ++   I  L +      I        V   +      
Sbjct: 521 KRMTTDNFKSQNRGGKGIKGMQTIEEDFIEDLLMTTTHHYILFFTNKGRVYRLKAYQIPE 580

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
                    + +L +L+  +    + N+  EK      + + +    + A          
Sbjct: 581 ASRTARGTAMVNLLQLQPDEQVKAVINIRKEKTDGYLFMATKRGIVKKTALSEYANIRKT 640

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                  R      EV   +        +  +    +  N   +R     S+ +  +   
Sbjct: 641 GLQAINLREDDDLIEVKLTNNE--NDIFLVTKNGMCIRFNEKDVRPTGRTSMGVIGMTID 698

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           + D +          ++L++S +G           +    G+ ++    +     ++ A 
Sbjct: 699 DTDEIVAMQLDTQGAKLLIVSENGLGKRTEISEFTTQHRGGKGVKCYKIVEKTGLVIGAK 758

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTGDH 660
             +   ++++++  G    +    I    R   G   + V  +  +  + KV  D 
Sbjct: 759 SVNDNNEIMLITKAGIIIRMAVESISTLGRITSGVKLMNVDGDNVIAKIAKVREDD 814


>gi|315022787|gb|EFT35811.1| DNA gyrase subunit A [Riemerella anatipestifer RA-YM]
          Length = 841

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/765 (29%), Positives = 392/765 (51%), Gaps = 38/765 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  +G+     + K
Sbjct: 6   ERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKKYLK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RYTEA
Sbjct: 66  SARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++++ IL  +D++ VDF++ +++   EP V P+K PNLL NGTSGIAVGMAT++  H
Sbjct: 126 RLKKISDEILSDLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNMAPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A  A IDN  I I++L++YII PDFPTGG I+   + + +++  GRG   +RA
Sbjct: 186 NLSESVDAICAYIDNKNIEIDELMKYIIAPDFPTGG-IIYGYDGVRDAFHTGRGRIVLRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EE+G     I+VTEIPY V K+ +I + +EL+   +I  + +IRDES      V++
Sbjct: 245 KVAFEEIG-NRNAIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRVVY 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                  P++++  ++  + ++T F +N   L     PQ + L  I+  ++ HR E++ R
Sbjct: 304 ELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVK-GRPQQLNLKDIIVHFVEHRHEIVIR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAY------LNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + ++    R  IL+G +              II         K  +++ F L++ Q 
Sbjct: 363 RTQYELKKARERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLIAEFELSDIQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+LRL  L  +E  +I+ E   ++     ++ +L +  + +  I  E+ EVKE +  
Sbjct: 423 QAILDLRLARLTGMELDKIRDEYKAIMDLINDLEDILANEARCYQIIKDELLEVKEKYGD 482

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT   E+  +      +  I  E + + IS+ G+I+              V  
Sbjct: 483 E-----RRT---EIDYSGGEMSIEDFIPNEEVVLTISHAGYIKRTLLSEYKTQSRGGVGN 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
            A   ++ D L+  + A     +L  +  GK Y L    +  G    +  AIQ LI++  
Sbjct: 535 RAASTRDEDFLEYIVSATNHQYMLFFTEKGKCYWLRVFEIPEGSKTAKGRAIQNLINIEP 594

Query: 599 NQDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  I      +            +++++  G                G   +++  ++++
Sbjct: 595 DDKIKAYIRTNDLKDSEYVKQMYVVMITKNGTIKKTSLEAYSRPRTNGIHAIEIREDDQL 654

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD-GGISDVICFKICE 707
                  G+  + +  +N K + F  ++   + R   GVR  S +D   +  +I     E
Sbjct: 655 LGARLTNGNSEIMIATKNGKCIRFPEEKARAVGRTSIGVRGISLEDNDEVIGMIVVNDME 714

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             T +  + + Y +        +  RGG G +      ++G+ ++
Sbjct: 715 NETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGQLIA 759



 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 8/194 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            I         +  +  + A+  +E D L  A   +    I++ + +GK    P     +
Sbjct: 626 TIKKTSLEAYSRPRTNGIHAIEIREDDQLLGARLTNGNSEIMIATKNGKCIRFPEEKARA 685

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                  ++  I L  N +++   V +      +LVVS KG        +     R GK 
Sbjct: 686 VGRTSIGVRG-ISLEDNDEVIGMIVVNDMENETVLVVSEKGYGKRTAVEDYRVTNRGGKG 744

Query: 641 FLKVSSEEK---MKLVV-KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            + ++  EK   +  +   V G+ + ++ ++   +  S+D +  M R  +GVRL + K+ 
Sbjct: 745 VITLNITEKTGQLIAIQSVVDGNDLMIINKSGVAIRMSVDNMRVMGRNTQGVRLINLKNN 804

Query: 696 GISDVICFKICEGL 709
                +     E  
Sbjct: 805 DEIAAVAKVEAEKD 818


>gi|332293377|ref|YP_004431986.1| DNA gyrase, A subunit [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171463|gb|AEE20718.1| DNA gyrase, A subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 848

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/754 (30%), Positives = 399/754 (52%), Gaps = 19/754 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+    A KK
Sbjct: 5   EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASGAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY LI GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLIDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D+D VD +  +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMQKISEDMLADIDKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   A IDN +++I++L+E++  PDFPTGG I    + + E+++ GRG   +RA
Sbjct: 185 NLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIY-GYDGVREAFKTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV  G  CI+VTEIPYQV K+ +I+K A++I  K+I  +  IRDES  +   +++
Sbjct: 244 KATFEEVK-GRECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L     P+++ L  ++  ++ HR  V+ R
Sbjct: 303 VIKRDAIPNIVLNKLYKYTALQSSFSVNNIALV-NGRPEMLNLKDMIHHFVEHRHVVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IAIIR          +   RF L+E Q  AI
Sbjct: 362 RTEYELKKAEARAHILEGLIIASDNIDEVIAIIRGSANGDEARQNLIERFKLSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++SE + ++   E +  +L   +++ + I  E++E+K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDILAKKERRMSIIREELQEIKDKYGDERR 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                              +  +       +  ++    ++     V   A   +  D L
Sbjct: 482 SVIEYAGGDVSITDLIPDKKVVITISNAGYIKRTSLTEYKTQNRGGVGTKASTTRNEDFL 541

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV-- 607
           +          +L  +  GK + +    +  G    +  AIQ LI++  + ++       
Sbjct: 542 EHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTSKGRAIQNLINIEQDDEVKAFVCTG 601

Query: 608 ------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                 Y +   +++ + KG        +       G   + +  ++++  V   TG+  
Sbjct: 602 DLKDEEYINNHFIIMATKKGQVKKTALEQYSRPRTNGINAITIKDDDELLSVKLTTGESQ 661

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRS 718
           V +  ++ K + F   +   M R   GVR  +  +     +    + +     +  + + 
Sbjct: 662 VMLALKSGKAIRFEESKTRPMGRNASGVRGITLANDQDEVIGMVSVNDVESNILVVSEKG 721

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +     +  RGG G        ++G+ ++
Sbjct: 722 YGKRSSLEDYRITNRGGKGVKTISVTEKTGELVA 755



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 71/217 (32%), Gaps = 8/217 (3%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           ++   +       ++  +   V  +        +++   ++A+  K+ D L         
Sbjct: 602 DLKDEEYINNHFIIMATKKGQVKKTALEQYSRPRTN--GINAITIKDDDELLSVKLTTGE 659

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSS 619
            +++L    GKA             +   ++ +   N   +++     +     +LVVS 
Sbjct: 660 SQVMLALKSGKAIRFEESKTRPMGRNASGVRGITLANDQDEVIGMVSVNDVESNILVVSE 719

Query: 620 KGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           KG        +     R GK    +     + E + +      D + ++ ++   +   +
Sbjct: 720 KGYGKRSSLEDYRITNRGGKGVKTISVTEKTGELVAIKNVTDADDLMIINKSGIAIRMEV 779

Query: 676 DQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTW 711
             +  M R  +GVRL + K       +     +    
Sbjct: 780 ASLRVMGRATQGVRLINLKGNDSIAAVAKVKSDDEAI 816


>gi|197105328|ref|YP_002130705.1| topoisomerase IV, subunit A [Phenylobacterium zucineum HLK1]
 gi|196478748|gb|ACG78276.1| topoisomerase IV, subunit A [Phenylobacterium zucineum HLK1]
          Length = 752

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/741 (52%), Positives = 518/741 (69%), Gaps = 9/741 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +    L  AL  RYLAYALS I +RA+PD+RDG KPV RR+++AM EM L+   A +
Sbjct: 13  PDRIIDEPLSEALSRRYLAYALSVITDRALPDVRDGLKPVQRRVLYAMREMRLNPENAAR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A++VGEV+G  HPHGDQ++YD+LVR+AQ F QRYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 73  KCAKVVGEVMGGYHPHGDQAIYDTLVRMAQSFAQRYPLVDGQGNFGNIDGDNAAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++T  A L+L G++EDAVDF+ TY+  D EPVV P+ FPNLLANG++GIAVGMATSIP 
Sbjct: 133 AKLTAAATLLLDGIEEDAVDFKPTYDGSDDEPVVLPAGFPNLLANGSTGIAVGMATSIPP 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+ +A L L++NPE S E L+ ++ GPDFPTGG+IVE R+S+ E+Y  GRGG RVR
Sbjct: 193 HNAGELIDACLLLLENPEASTEALMTHVQGPDFPTGGVIVEPRQSLAETYATGRGGVRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ARW  E++G+G++ IVVTEIPYQV+K+ L+EK+AELI AK+ PLL D+RDESAEDVR+VL
Sbjct: 253 ARWTKEDLGKGTYQIVVTEIPYQVKKADLVEKLAELIEAKKAPLLGDVRDESAEDVRLVL 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK+R+++ ++LMES+F LSD+ETRF +N+NVL     P VM L   LK +L HRREVL 
Sbjct: 313 EPKSRNVEAEVLMESLFKLSDLETRFSVNLNVLDARGTPGVMNLRQALKAFLDHRREVLV 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RR+  R++ I+ R+ IL GL+IAYLN+DE+I I+R EDKPK  ++  FSL+E Q DAILN
Sbjct: 373 RRARHRLEKIEARLHILDGLMIAYLNLDEVIRIVRYEDKPKEKLIETFSLSEIQADAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RLR L KLEE +I+ E   L  E++ I  +L S   QW  +   +R VK    K   L 
Sbjct: 433 TRLRQLAKLEEMEIRREHAELAEERDGILKMLASDAAQWKLVGEGLRHVKAELGK---LN 489

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RR+TF E  + D     +AMI +EPIT+++S RGWIR+ K    D S L FKEGD L+ 
Sbjct: 490 DRRSTFGEAPQVDAEAAIEAMIVREPITIILSERGWIRAAKGRIEDPSELKFKEGDKLQF 549

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            + A TTD++L+ ++DG+ +TL    L   RGHGE ++L+IDL+    IV  F +    K
Sbjct: 550 LVPAETTDKLLIFASDGRFFTLGCDKLPGARGHGEPLRLMIDLDDKVGIVDVFPHKPGAK 609

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK----VSSEEKMKLVVKVTGDHVAVVGENRK 669
            L+ S +G  FI+ E E IA  R GK  L         E   + + VTGD +AVVG+N K
Sbjct: 610 RLLASKQGYGFILPEEEAIAFRRAGKQVLNAGDPAKKGEGAAVCLPVTGDQIAVVGDNGK 669

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           +L+F + ++PEM RGKGV+LQSY++GG+ D + F   EG  WID+AGR   R+ +    W
Sbjct: 670 ILVFPLAELPEMPRGKGVKLQSYREGGLRDALVFNAAEGAAWIDAAGR--TRAWDGWQEW 727

Query: 730 LGKRGGVGSLVPKGFPRSGKF 750
            G+R G G L PKGFP + +F
Sbjct: 728 AGRRAGAGKLAPKGFPATKRF 748


>gi|238650533|ref|YP_002916385.1| DNA topoisomerase IV subunit A [Rickettsia peacockii str. Rustic]
 gi|238624631|gb|ACR47337.1| DNA topoisomerase IV subunit A [Rickettsia peacockii str. Rustic]
          Length = 738

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/739 (50%), Positives = 527/739 (71%), Gaps = 4/739 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEDKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+C+A + LI++P+  I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  R
Sbjct: 181 LPHNLHELCDALIHLINHPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P +R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPTDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVTFTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           KRG  G L P GFP++ +F
Sbjct: 717 KRGSTGKLPPMGFPKNNRF 735


>gi|254503583|ref|ZP_05115734.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11]
 gi|222439654|gb|EEE46333.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11]
          Length = 940

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/847 (31%), Positives = 416/847 (49%), Gaps = 108/847 (12%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN + S  L  + +K VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M E
Sbjct: 9   DNSTPSGGLPSD-IKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHE 67

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G ++   ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG++DG
Sbjct: 68  NGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDG 127

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE R+ +VA  +L  +D+D VDF++ Y+  +SEPVV P+KFPNLL NG  GI
Sbjct: 128 DPAAAMRYTECRLEKVAHRLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGAGGI 187

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A++A+++NP +++E+L++ + GPDFPTGG+I+  R  I  +Y
Sbjct: 188 AVGMATNIPPHNLGEVIDASIAIMENPAMTLEELMQIVPGPDFPTGGMIL-GRSGIRSAY 246

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +RA+   EE+ +  W ++VTEIPYQV KS +IEKIAE++  KR+  + DIRD
Sbjct: 247 ETGRGSVPMRAKVDTEEIRKDRWALIVTEIPYQVNKSTMIEKIAEMVRDKRVEGISDIRD 306

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      V+    R   PD+++  ++  S ++T F  NM  L+ G  P+ M L  +LK 
Sbjct: 307 ESDRSGMRVVIELKRDAVPDVVLNQLYRFSQLQTSFGANMVALN-GGKPEQMNLSDMLKA 365

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------- 412
           ++A R EV+ RR+ + ++    R  IL GL IA  NIDE+I +IR               
Sbjct: 366 FVAFREEVIQRRTRYLLKKCRDRAHILVGLGIAVANIDEVIKLIRAAPDPATARAQLMER 425

Query: 413 ------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+E Q  AIL+LRL+ L  +   +I+ EL+ +
Sbjct: 426 NWPARDVEDLIRLIDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKI 485

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
            AE      +L S  +    +  E+ E++E F+       RRT   E         ++ +
Sbjct: 486 GAEISDYLDILRSRARIQEIVRNEMLEIREEFATP-----RRTEIIE---GGADFDEEDL 537

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V +S+ G+I+          +      S +  K+ D +     A+T   +L  
Sbjct: 538 IQREDMVVTVSHGGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFF 597

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVS 618
           S+ G  Y +    L        G+A+  ++ L   + I +               ++  +
Sbjct: 598 SSRGICYKMKVWRLPLGGPTSRGKALVNMLPLEQGEQITSILPLPEDEDTWANLDVMFAT 657

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
            +G     + S+ +   R GK  +K+   + +  V   +    + +   + + + F    
Sbjct: 658 VRGTVRRNKLSDFVNINRNGKIAMKLEEGDGIVGVDTCSEHSDIMLTTNSGQCIRFPATD 717

Query: 678 IPEM-SRGK-GVRLQSYKDGGISDVI-------------------------------CFK 704
           +     R   GVR     DG     +                                  
Sbjct: 718 VRVFAGRNSVGVRGIRLADGDRIISMQILHHIDVDAEERAAYLKLSRAMRGEADENGAAA 777

Query: 705 ICEG------------------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +G                     +  +   Y +  +     +  RGG G        R
Sbjct: 778 DEDGVVAGELSQERYAEMSAAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAVNHR 837

Query: 747 SGKFLSS 753
           +G  ++S
Sbjct: 838 NGGLIAS 844


>gi|297566863|ref|YP_003685835.1| DNA gyrase subunit A [Meiothermus silvanus DSM 9946]
 gi|296851312|gb|ADH64327.1| DNA gyrase, A subunit [Meiothermus silvanus DSM 9946]
          Length = 805

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/758 (31%), Positives = 391/758 (51%), Gaps = 32/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             V  + +   +++ ++ YA+STI +RA+PD+RDG KPV RRI++A  + GL       K
Sbjct: 2   SQVLPIEITEEVKQSFINYAMSTIVDRALPDVRDGLKPVQRRILYAAQQEGLIPTRKHSK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+ K HPHGD ++YD+L RLAQP+ QRYPLI GQGNFG+IDGD  AA RYTEA
Sbjct: 62  SAGIVGEVMKKYHPHGDAAIYDTLARLAQPWNQRYPLIDGQGNFGSIDGDPPAAQRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +   +L+ +D++ V+F   Y+    +P V P+  PNLL NG++GIAVGMATSIP H
Sbjct: 122 RLSSIGYEMLRDIDKETVNFYPNYDGTTEQPEVLPAAIPNLLVNGSTGIAVGMATSIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A +ALID P +S++++++ + GPDFPTG  +  SR+ I E+Y  GRG  +VRA
Sbjct: 182 NLSEVIDALVALIDQPGLSLDEIMKLLPGPDFPTGARL--SRKGIREAYASGRGSLKVRA 239

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +    E   G   +V TEIPYQV K+ LI +IA L   K I  +  +RDES      +  
Sbjct: 240 KVR-NEDKNGRAMLVFTEIPYQVNKADLIAQIAGLAKNKVIEEIAALRDESDRQGMRIAV 298

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  +P +++  ++  S ++  F +N+  +     P+V+ L  +L+ +L HRREV++R
Sbjct: 299 ELKRGANPQVVLNKLYKHSRLQASFTVNLLAIV-NGEPKVLSLPELLRHYLNHRREVVYR 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAI 431
           R+ + +    +R  +L+GLLIA  +IDE+IA+IR             +RF+L++ Q  AI
Sbjct: 358 RTQYELSEAKKRAHVLEGLLIALDHIDEVIALIRGSADANEARTGLIARFALSDIQAQAI 417

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +++ E   L      + ++L   K+ W  +  E+ E+K  +  +  
Sbjct: 418 LDMRLQRLVGLEREKLQEEYRELQETIAYLSAILQDEKRLWGVVKEELLEIKNKYGDA-- 475

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSAL 543
              RRT   E          + +IE EP+ + ++++G+++              V   A 
Sbjct: 476 ---RRTQLTEFEEGFNP---EDLIEDEPMVITLTSQGFLKRTPLEAYRAQGRGGVGAQAG 529

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQD 601
             KE D       A   D +L  +  G+ Y      L     +  G  +  ++ L   ++
Sbjct: 530 KTKEEDEAVQVFVASMHDDLLFFTNRGRVYREKVFELPEASRQARGTHVVSMLPLIEGEE 589

Query: 602 IVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-T 657
           +               +  + +G     E  E    +  G   + +   + +  V     
Sbjct: 590 VAALLGVRSLSEAGYFVFATRQGLIKRTEIQEYQNLSSAGLIAINLLENDALIGVGIAQD 649

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG--LTWIDS 714
           G+ + +     + + F ++ +    R  +GV    +KD G   V    + +G     +  
Sbjct: 650 GEQIMLATAYGQAIRFDLEDVRATGRASQGVTGIRFKDEGDQVVSLVILPKGYEGEVLAV 709

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +  +     +  RGG G +  K   + GK  +
Sbjct: 710 GTKGYGKRTSVAEYPVQGRGGQGVITFKTTEKVGKLAA 747



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 55/159 (34%), Gaps = 7/159 (4%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKL 614
           A   ++I+L +  G+A      ++ +     + +  +   +    +V+  +       ++
Sbjct: 647 AQDGEQIMLATAYGQAIRFDLEDVRATGRASQGVTGIRFKDEGDQVVSLVILPKGYEGEV 706

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM----KLVVKVTGDHVAVVGENRKL 670
           L V +KG       +E     R G+  +   + EK+     L+     + + V+      
Sbjct: 707 LAVGTKGYGKRTSVAEYPVQGRGGQGVITFKTTEKVGKLAALMRVAGDEDLLVLSRRGIA 766

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +   +  I    R   GV++ +  +            + 
Sbjct: 767 IRTKVGSISLYGRPTSGVKIMNLAEDDEVVSAFVIKPQD 805


>gi|83311480|ref|YP_421744.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum
           AMB-1]
 gi|82946321|dbj|BAE51185.1| Type IIA topoisomerase , A subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 895

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/822 (31%), Positives = 409/822 (49%), Gaps = 84/822 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++      + ++  V++   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ AM+E G
Sbjct: 1   MTTLPASPQFDITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEAG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
             F   F+KSARIVG+V+GK HPHGD ++YD++VR+AQ F  R PL+ GQGNFG++DGD 
Sbjct: 61  YHFNKPFRKSARIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ + A  +L+ +D++ VDF+  Y+E   EP+V P+++PNLL NG  GIAV
Sbjct: 121 PAAMRYTEARLARSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  A ID+PE+++E+L+E + GPDFPTGG I+  R  I  +   
Sbjct: 181 GMATNIPPHNLGEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTIL-GRAGIRAAQLT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +EEV +    IVVTEIPYQV K+R++E+IAEL+  K+I  + D+RDES
Sbjct: 240 GRGSVVMRGRVHIEEVRKDREAIVVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R    ++++  ++  + ++T F +N   L+ G  P++M L  I+  ++
Sbjct: 300 DRDGVRMVVEIKRDAIAEVVLAQLYRFTPLQTSFGVNSLALN-GGRPEMMTLRDIIVAFI 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           A R EV+ RR+ F +     R  +L GL IA  NIDE+I +IR    P            
Sbjct: 359 AFREEVITRRTIFELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEAREKLMTRAW 418

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                             +    + L+E Q  AIL+LRL  L  LE  +I  EL  +  +
Sbjct: 419 PVGDVEPLIRLIDEPGRAIEDGCYRLSEVQAKAILDLRLHRLTGLERDKIGDELREIGHQ 478

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E    +L+S  +    +  E+ E++E F+       RRTT  E          + +I +
Sbjct: 479 IEAYLLILSSRPRLMEVMRGELMEIREQFATP-----RRTTIEENEFE---ADIEDLIAR 530

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V ++N G+I+          K      S ++ K+ D L      +T   +L  S+ 
Sbjct: 531 EDMVVTVTNTGYIKRVPLSAYRAQKRGGKGRSGMNIKDEDFLTQVFVVNTHTPVLFFSST 590

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKG 621
           G AY L    L   + +  G+A+  L+ L+  + I T               ++ V+SKG
Sbjct: 591 GIAYKLKVYRLPLGNPQARGKAMVNLLPLDDGETISTIMPLPEDETTWGDLHVMFVTSKG 650

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIP 679
           +      S+       GK  +K+   E++  V       D V +     K + F +  + 
Sbjct: 651 DVRRNPLSDFTEVRANGKIAMKLGEGERLISVQTCSAESDDVLLATHRGKAIRFPVQDVR 710

Query: 680 E-MSR-GKGVRLQSYKDGGISDVICFK--------------------------ICEGLTW 711
           E  SR   GVR            +                             + E    
Sbjct: 711 EFKSRDSTGVRGIRLDGEDEVISMSILRHTDYDSETRDAFLKGDLPADQMDKMVAEQQFI 770

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +  +     +  RGG G        ++G  ++S
Sbjct: 771 LTVTENGFGKRTSAFEYRITGRGGSGIANLDMTAKTGLVVAS 812



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVA 662
           +      +L V+  G        E     R G     +    K  LVV        D + 
Sbjct: 763 MVAEQQFILTVTENGFGKRTSAFEYRITGRGGSGIANLDMTAKTGLVVASFPVNHEDDIM 822

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +V +  KL+   +D I    R  +GV L    +        
Sbjct: 823 LVSDGGKLIRMPVDDIRIAGRKTQGVTLLRTAENERVVSAA 863


>gi|46143842|ref|ZP_00133972.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126207774|ref|YP_001052999.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae L20]
 gi|126096566|gb|ABN73394.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 896

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/820 (30%), Positives = 388/820 (47%), Gaps = 80/820 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I+N +I IE+L+ +I GPDFPTG  I+  R+ I E+YR GRG  
Sbjct: 182 IPPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGA-IINGRKGIEEAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +   
Sbjct: 241 YVRAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRRE
Sbjct: 301 SIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPKVLNLKQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IRN                     
Sbjct: 360 VVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V   ++ L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKA 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +L+S ++    I  E+ +VK  F           +         A     
Sbjct: 480 LLTEIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+   +  M R
Sbjct: 660 KVSLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMGR 719

Query: 684 -GKGVRLQSYK-----------------------------DGGISDVICFKICEGLTWID 713
              GVR                                  D      +     EG   + 
Sbjct: 720 TATGVRGIKLATTDISSEEIEEAEIVEIENEEADESSVSLDTDRVVSLVIPRTEGD-ILT 778

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +        +  R   G +  K   R+GK +++
Sbjct: 779 VTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLV 653
               +V+  +  +   +L V+  G        E    +R  K  + +   E+    +  V
Sbjct: 760 DTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAV 819

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
                D + ++ +   L+   + ++  + R  +GVR+    D      +
Sbjct: 820 QVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSV 868


>gi|303252524|ref|ZP_07338687.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307245101|ref|ZP_07527194.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307247273|ref|ZP_07529322.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307254056|ref|ZP_07535903.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258512|ref|ZP_07540249.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|302648492|gb|EFL78685.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306853990|gb|EFM86202.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306856246|gb|EFM88400.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306862981|gb|EFM94928.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867416|gb|EFM99267.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 896

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/820 (30%), Positives = 388/820 (47%), Gaps = 80/820 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I+N +I IE+L+ +I GPDFPTG  I+  R+ I E+YR GRG  
Sbjct: 182 IPPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGA-IINGRKGIEEAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +   
Sbjct: 241 YVRAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRRE
Sbjct: 301 SIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPKVLNLKQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IRN                     
Sbjct: 360 VVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V   ++ L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKA 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +L+S ++    I  E+ +VK  F           +         A     
Sbjct: 480 LLTEIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+   +  M R
Sbjct: 660 KVSLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMGR 719

Query: 684 -GKGVRLQSYK-----------------------------DGGISDVICFKICEGLTWID 713
              GVR                                  D      +     EG   + 
Sbjct: 720 TATGVRGIKLATTDISSEEIEEAEIVEIENEEADESSVSLDTDRVVSLVIPRTEGD-ILT 778

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +        +  R   G +  K   R+GK +++
Sbjct: 779 VTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLV 653
               +V+  +  +   +L V+  G        E    +R  K  + +   E+    +  V
Sbjct: 760 DTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAV 819

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
                D + ++ +   L+   + ++  + R  +GVR+    D      +
Sbjct: 820 QVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSV 868


>gi|300088462|ref|YP_003758984.1| DNA gyrase subunit A [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528195|gb|ADJ26663.1| DNA gyrase, A subunit [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 814

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/755 (32%), Positives = 403/755 (53%), Gaps = 17/755 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V  N + +++   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AMS++G+ +  +
Sbjct: 1   MVIGNTRPINIEDEMKNSYMDYAMSVIVSRALPDVRDGLKPVHRRILYAMSDLGMHYNTS 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L+ GQGNFG++DGD  AA RY
Sbjct: 61  YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQNFSLRYMLVDGQGNFGSVDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T++A  +L  +D+D V+F   +++   EP V PS+ P LL NG SGIAVGMAT+I
Sbjct: 121 TEARLTRLAGELLVDIDKDTVEFMPNFDDSLKEPTVLPSRLPVLLMNGASGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A   LIDNPE  +E L++++ GPDFPTGG ++  R+ I  +Y  G G   
Sbjct: 181 PPHNLTELCDAISYLIDNPECGLEDLMQFVKGPDFPTGG-LILGRDGIKSAYATGHGKVV 239

Query: 252 VRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           VRAR  V +V        I+++E+PYQV K+ L+++IA L   ++I  + ++RDES    
Sbjct: 240 VRARAHVADVAETGARRQIIISELPYQVNKADLVKRIAMLSRERKINGIAEVRDESDRQG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R  +P  ++ +++  ++++T F +NM  L     P V+ L   L  ++A R+
Sbjct: 300 LRVVIELKRDGEPQQILNNLYKHTNLQTSFFVNMLALV-NNRPVVLNLKEALNHYVAFRQ 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
           E++ RRS F ++A   R  IL+GL IA  N+D II +IR+ +         +SRF L++ 
Sbjct: 359 EIITRRSKFELKAARARAHILEGLKIALDNLDAIINLIRHAENADTARRELMSRFELSQL 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+L+LR L  LE  +I  E  ++L +   ++ LL + ++  + +  ++ EVK  +
Sbjct: 419 QAQAILDLQLRRLANLERQKILGEYADILKQISYLEDLLANPRKVLSLVKDDLAEVKARY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHF 545
             +     +     E    D    Q  ++       +      +           S +  
Sbjct: 479 GDARRTEIQSQGVIEFREEDLIPHQSMVVTLTERGFIKRVPTEVYRLQHRAGRGKSIIKT 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---GRGHGEAIQLLIDLNHNQDI 602
           +E DS++  + A T D +LL +  GK +++    +         G AI  L+ L  N+ I
Sbjct: 539 READSVRFIMVADTHDSVLLFTNRGKIFSIKCHEIPCDLLRTAKGIAIINLVPLAENERI 598

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +      +D    L++ +S G     + S+  A    G   + +   +++   V    D
Sbjct: 599 TSMIAVSRFDEETSLIMATSGGECKRTKLSDFAAVRSSGLLAMDLPKNDELIGAVIAGAD 658

Query: 660 H-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + ++  N + + F +  +    R   GVR  +  +G            G   +     
Sbjct: 659 ENIILITHNGRSIHFPVADLRVSQRASGGVRGITL-EGDDRVAGLDVARPGHFVLVVTTG 717

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +        L +R G G L  K   ++GK  +
Sbjct: 718 GYGKLTAVEEYPLQRRAGSGVLTFKVVDKTGKVAA 752



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 18/195 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++ ++ G  +  K           L A+   + D L  A+ A   + I+L++ +G++   
Sbjct: 614 IMATSGGECKRTKLSDFAAVRSSGLLAMDLPKNDELIGAVIAGADENIILITHNGRSIHF 673

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
           P  +L   +         I L  +  +    V      +LVV++ G   +    E     
Sbjct: 674 PVADLRVSQRAS-GGVRGITLEGDDRVAGLDVARPGHFVLVVTTGGYGKLTAVEEYPLQR 732

Query: 636 RKGKTFLK---VSSEEKMKLVVKVTGDH-VAVVGENRKLLIFS------IDQIPEMSR-G 684
           R G   L    V    K+     V  +H V +      ++            I  M R  
Sbjct: 733 RAGSGVLTFKVVDKTGKVAAGKVVDREHQVMIATAEGVVIRTPVGTEDQEKGIIVMGRST 792

Query: 685 KGVRLQSYKDGGISD 699
           +GV +    +     
Sbjct: 793 QGVIVIRPDENDRVV 807


>gi|311232353|gb|ADP85207.1| DNA gyrase, A subunit [Desulfovibrio vulgaris RCH1]
          Length = 837

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/756 (32%), Positives = 406/756 (53%), Gaps = 29/756 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + +S+   L + YL Y+LS I  RAIPD+RDG KPVHRRI+ A  E+G  +    KKSAR
Sbjct: 5   QQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSAR 64

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+VIGK HPHGD +VYD++VR+AQ F  R PL+ GQGNFG+IDGD+AAA RYTE RM+
Sbjct: 65  IVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 124

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A   +  ++++ VDFR  Y+    EPVV P++ PNLL NG++GIAVGMAT+IP HN+ 
Sbjct: 125 RLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLG 184

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C A L L+D+   +I+ L++++ GPDFPTGG +    + +V++Y  GRG  +VR +  
Sbjct: 185 ELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAG-QGLVDAYTTGRGTVKVRGKVE 243

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +EE  +G   IV+ EIPY + KS L+EKIA L+  +RI  + D+RDES      V+    
Sbjct: 244 IEERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLK 303

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   PD+++ +++  + +E+ + +NM  +   R PQ++ L   L  +L HRRE++ RR+ 
Sbjct: 304 RGTIPDIVVNALYKYTPLESSYGINMLAVVDNR-PQLLDLKSALSHFLEHRREIIIRRTR 362

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNL 434
           + ++  + R  IL+GL IA  NIDE++A+IR    P+     ++ RF L+E Q  AIL++
Sbjct: 363 YDLRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQRFGLSEAQSQAILDM 422

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE  ++  E   LL + E   S+L + +     +  E  E+++ ++      +
Sbjct: 423 RLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEIRDTYAT-----K 477

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT         +    + +I  + + + +S RG+I+          +     ++ LH  
Sbjct: 478 RRTEVL--MDELEGIAIEDLIPDDDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGLHTS 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           + D ++  L       +LL +  GK + L    +  G    +   I  L+ L  ++ + T
Sbjct: 536 DDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVHIANLLPLEKDEWVTT 595

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDH 660
                 +      L V+ +G       S      + G   + +  ++++ +V ++   DH
Sbjct: 596 VLSVREFAEDRFFLFVTKRGMVKRSSASLYARARKGGLIAVGLRDDDELIMVREIHNDDH 655

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT--WIDSAGR 717
           V +       + F+   +  M R   GV+  +               +  +   +  +  
Sbjct: 656 VVLTTGGGMAIRFACPDVRPMGRSATGVKGVALSGDDRVVACAVLPGDDTSTEIMSISSN 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +     L  L  RGG G    +  P++G  + +
Sbjct: 716 GYGKRTRIELYRLQSRGGKGVKNFRVTPKTGDVIGA 751



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 12/165 (7%)

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC-KLLV 616
            D  ++L+T G      A   +   G        + L+ +  +V       D T  +++ 
Sbjct: 652 NDDHVVLTTGGGMAIRFACPDVRPMGRSATGVKGVALSGDDRVVACAVLPGDDTSTEIMS 711

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDH-VAVVGENRKLL 671
           +SS G             +R GK          + + +   + V  D  + ++    K++
Sbjct: 712 ISSNGYGKRTRIELYRLQSRGGKGVKNFRVTPKTGD-VIGAMPVRDDEALVLLTSTNKII 770

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             S+D++  + R   GV L    +G I  V+ F   +    ++ +
Sbjct: 771 RMSVDEVRSVGRATMGVMLVRLDEGAI--VVGFDRVDEREVVEES 813


>gi|313904730|ref|ZP_07838104.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6]
 gi|313470523|gb|EFR65851.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6]
          Length = 876

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/767 (30%), Positives = 387/767 (50%), Gaps = 34/767 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++  V +N++ V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+    
Sbjct: 3   TDDKVFDNIEEVDLKKKMEDSYIDYAMSVIASRALPDVRDGMKPVQRRILYSMIELNNGP 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               +K ARIVG+ +GK HPHGD S+Y ++V +AQ +  RY L+ G GNFG++DGD AAA
Sbjct: 63  DKPHRKCARIVGDTMGKYHPHGDSSIYGAMVTMAQDWNMRYTLVDGHGNFGSVDGDGAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+++++  ++  +++D VDF   +++ + EP V P++FPNLL NG SGIAVGMA
Sbjct: 123 MRYTEARLSKISMEMVADLNKDTVDFAPNFDDTEKEPTVLPARFPNLLVNGASGIAVGMA 182

Query: 189 TSIPSHNVQEICEA-----ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           T+IP+HN+ E+  A        + ++ +  ++++++ + GPDFPTGG I+     I E+Y
Sbjct: 183 TNIPTHNLTEVIAAVVKIINNRIDEDRDTELDEIMQIVKGPDFPTGGEIL-GTRGIEEAY 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG  RVR    +E +  G   I++TE+PY V K+RLIEKIAEL+  K+I  +  I D
Sbjct: 242 RTGRGKVRVRGISSIESLPNGKSEIIITELPYMVNKARLIEKIAELVRDKKIDGITGISD 301

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            S+ +   ++    R  + ++++  ++  + ++  F + M  L     P+V+ L  IL+ 
Sbjct: 302 HSSREGMRIVIDVRRDANANVILNKLYKHTQLQDTFGVIMLALVD-NQPKVLNLLQILEY 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---R 420
           +L H+ EV+ RR+ + +     R  IL+GLL A   IDE+I  IR          +   +
Sbjct: 361 YLKHQEEVVTRRTRYDLNKAQERAHILEGLLKALDLIDEVIHTIRASATTNEAKANLIAK 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F  TE Q  AI+++RLR+L  LE  +++ E D L  + ++  ++L   K     I  EI+
Sbjct: 421 FGFTEAQAQAIVDMRLRTLTGLERDKLQGEFDELQKKIKEYQAILADRKVLLGVIRDEIQ 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------- 533
            + + F        RRT              + +I  +   + +S+ G+I+ +       
Sbjct: 481 IISDKFGDE-----RRTRI---GHDVYDITTEDLIPNDNNVLTMSHLGYIKRMSPENFHA 532

Query: 534 -KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI 590
                  +      E D ++      + D I+  +  G+AYTL A  +        G AI
Sbjct: 533 QNRGGKGIKGTSNIENDYIEDLFMTMSHDYIMFFTNLGRAYTLKAYEIPEASRTARGTAI 592

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+ L   + I        +     L + + KG              + G   + +  +
Sbjct: 593 INLLQLMPGEKITAIIPVSEFKENQYLFMATKKGMVKKTPVPAFRNMRKSGLAAITLRDD 652

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           + +  V    G   V +   N   + F+   +    RG  GVR     DG    +     
Sbjct: 653 DDLIEVKYTDGKQDVFLATANGMSIRFNEQDVRATGRGSMGVRGIWL-DGEDEVIGMQLQ 711

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +G   + S+     +        + KRGG G L  K   R+GK + 
Sbjct: 712 AQGKYLLFSSENGIGKRTLFEEFRIQKRGGKGILCYKPNERTGKLVG 758



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 64/177 (36%), Gaps = 7/177 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L+A+  ++ D L    +      + L + +G +      ++ +       ++ +  L+ 
Sbjct: 643 GLAAITLRDDDDLIEVKYTDGKQDVFLATANGMSIRFNEQDVRATGRGSMGVRGIW-LDG 701

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVK 655
             +++   +      LL  S  G        E     R GK  L     E+   +  V  
Sbjct: 702 EDEVIGMQLQAQGKYLLFSSENGIGKRTLFEEFRIQKRGGKGILCYKPNERTGKLVGVKA 761

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   D + ++  +  ++  S+D +  + R   GV+L    D  ++ +   +  +   
Sbjct: 762 VNDEDELMLITVSGIVIRISVDDVSVIGRSAMGVKLMDVMD-SVASIAKVRKDDSDE 817


>gi|332830576|gb|EGK03190.1| DNA gyrase, A subunit [Dysgonomonas gadei ATCC BAA-286]
          Length = 863

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/778 (29%), Positives = 399/778 (51%), Gaps = 41/778 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E+ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  MSE+G       
Sbjct: 4   TEDRIIKINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMSELGNASNKPH 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RY L+ GQGN G++DGD  AA RYT
Sbjct: 64  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWSMRYLLVDGQGNMGSVDGDMPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++AE +L+ +D++ VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++ 
Sbjct: 124 EARLSRLAEEMLKDIDKETVDFQLNFDDTLKEPTVLPTRIPNLLINGASGIAVGMATNMA 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +A I+N +I    L++YI  PDFP+GG  +   + +++++  GRG   +
Sbjct: 184 PHNMTEAINATIAYIENKDIDTAGLMQYIKAPDFPSGG-FIYGYQGVIDAFETGRGRVVM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R R  + E+      IV+TEIPY V K+ LI+ IA+L+  KR+  + ++ DES      +
Sbjct: 243 RGRAEI-EMEGNHEKIVITEIPYLVNKAELIKHIADLVGEKRLEGISNVNDESDRQGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++  ++ L+ +++ F +N   L     P+ + L  ++  ++ HR +V+
Sbjct: 302 VVDIKRDANANVVLNKLYKLTALQSSFSVNNIALVK-GRPKTLNLKEMIGFFVEHRIDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F ++  + R  IL+GL+IA  NIDE+IAIIR      +    ++ RF+L+E Q  
Sbjct: 361 TRRTIFELRKAEERAHILEGLIIASDNIDEVIAIIRASKSPQEAIERLIERFNLSEIQAR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E D +      ++ +L + + +   I  E+ EV++ +  +
Sbjct: 421 AIVEMRLRQLTGLEQDKLRNEYDEIQKLIAYLNEILINEELRMKVITDELIEVRDKYGDA 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +         +  +  +       +  +     R+     V       ++ D
Sbjct: 481 RRTEIVYASEELNPEDFYSNDEMIITISHLGYIKRTPLSEFRAQNRGGVGAKGSETRDTD 540

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-HNQDIVTAFV- 607
            ++    A   + +LL +  GK Y L   ++  G  + +   +   LN  + D VTAFV 
Sbjct: 541 FIEHIYPASMHNYMLLFTQKGKCYWLRVFDIPEGTKNSKGRAIQNLLNIDSDDKVTAFVR 600

Query: 608 --------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   + ++  L+  + +G              + G   + +  E+K+  V+   G+
Sbjct: 601 VRGFSDTEFINSHYLIFCTKEGVIKKTSLEAYSRPRQNGVNAITIREEDKVIEVLMTDGE 660

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-----KICEGLTWI 712
             + +   N + + F+   +  M R   GVR     + G  +VI       +  +  T +
Sbjct: 661 SEILLANRNGRAIRFNEKDVRVMGRTATGVRGMRLDEDGQDEVIGMLAMSKEAQKNETIM 720

Query: 713 DSAGRSYNRSENDLL------------------GWLGKRGGVGSLVPKGFPRSGKFLS 752
             + + Y +  N                       +  RGG G        ++GK +S
Sbjct: 721 VVSEQGYGKRTNLNEKDEEGNEILDENGEIVPVYRITSRGGKGVKTLNITEKTGKLVS 778



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 71/216 (32%), Gaps = 29/216 (13%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           VI         +     ++A+  +E D +   L       ILL + +G+A      ++  
Sbjct: 623 VIKKTSLEAYSRPRQNGVNAITIREEDKVIEVLMTDGESEILLANRNGRAIRFNEKDVRV 682

Query: 583 GRGHGEAIQLL-IDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESE------- 630
                  ++ + +D +   +++         +    ++VVS +G       +E       
Sbjct: 683 MGRTATGVRGMRLDEDGQDEVIGMLAMSKEAQKNETIMVVSEQGYGKRTNLNEKDEEGNE 742

Query: 631 -----------IIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
                          +R GK    +     + + + +      + + ++ ++   +   +
Sbjct: 743 ILDENGEIVPVYRITSRGGKGVKTLNITEKTGKLVSINSVTDENDLMIINKSGITIRLKV 802

Query: 676 DQIPEMSRG-KGVRLQSY-KDGGISDVICFKICEGL 709
             I  M R  +GVRL +  K       IC    E  
Sbjct: 803 SDIRTMGRATQGVRLINLGKRNDEIASICKVESESE 838


>gi|307249501|ref|ZP_07531489.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858494|gb|EFM90562.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 896

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/820 (30%), Positives = 389/820 (47%), Gaps = 80/820 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I+N +ISIE+L+ +I GPDFPTG  I+  R+ I E+YR GRG  
Sbjct: 182 IPPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGA-IINGRKGIEEAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +   
Sbjct: 241 YVRAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRRE
Sbjct: 301 SIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPKVLNLKQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IRN                     
Sbjct: 360 VVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V   ++ L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKA 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +L+S ++    I  E+ +VK  F           +         A     
Sbjct: 480 LLTEIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+   +  M R
Sbjct: 660 KVSLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSARGRVVRFAEKAVRAMGR 719

Query: 684 -GKGVRLQSYK-----------------------------DGGISDVICFKICEGLTWID 713
              GVR                                  D      +     EG   + 
Sbjct: 720 TATGVRGIKLATTEISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSLVIPRTEGD-ILT 778

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +        +  R   G +  K   R+GK +++
Sbjct: 779 VTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLV 653
               +V+  +  +   +L V+  G        E    +R  K  + +   E+    +  V
Sbjct: 760 DTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAV 819

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
                D + ++ +   L+   + ++  + R  +GVR+    D      +
Sbjct: 820 QVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSV 868


>gi|229816231|ref|ZP_04446541.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM
           13280]
 gi|229808239|gb|EEP44031.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM
           13280]
          Length = 929

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/747 (33%), Positives = 388/747 (51%), Gaps = 29/747 (3%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             +++ ++ Y++S I  RA+PD+RDG KPVHRRI++AM+E G+      KKSA  VGEVI
Sbjct: 79  REMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVGEVI 138

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHGD +VYD++VRLAQ F  R PLI G GNFGNIDGD AAA RYTE+R+ + A  +
Sbjct: 139 GKYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMEL 198

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           L+ + +D VD++  Y+E  +EP   P++FPNLL NG+ GIAVGMAT+I  HN+ E  EA 
Sbjct: 199 LRDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMGEAVEAT 258

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
             LID+P+ ++++L+  + GPDFPTG  ++   + I +SY  GRG   VRA+  VE    
Sbjct: 259 CYLIDHPDATVDELMRIMPGPDFPTGA-LIMGTDGIRQSYETGRGSITVRAKAHVESTKT 317

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
           G   +V TEIPY V K  L EKIA L+  KRI  + D+RDES +    ++    + + P 
Sbjct: 318 GRNRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVIPQ 377

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F  N   L    +P+ + L  +L+ ++ H+ +V+ RR+ F ++  
Sbjct: 378 VVLNNLYKYTSLQTTFGANNLALV-NGIPKRLSLREMLQHYIDHQVDVVTRRTRFDLKKA 436

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNLRLRSLR 440
             R  IL+G L A  +IDE+I+IIR+          ++ RF  +  Q  AIL ++LR L 
Sbjct: 437 QARAHILEGYLKALDHIDEVISIIRSSQTDAEASSRLIERFGFSPEQTTAILEMKLRRLT 496

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+ EL+ L       + LL   ++    I  E+RE+   F       +RRT   
Sbjct: 497 GLERDKIEEELEGLRRAIAYYEDLLAHEEKILGVIKEEMREIARKFGD-----KRRTQI- 550

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLK 552
             + A+K    + +I  E + V I++ G+++          K     +S ++ KE D + 
Sbjct: 551 --TGAEKDLNVEDLIADEDMVVTITHTGYVKRIPVESYRAQKRGGKGVSGVNLKEDDVID 608

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A T + +L  ST GK Y L    L     +  G AI  L+     + I +      
Sbjct: 609 EMFIASTHEYVLFFSTKGKVYRLKVHELPEGTRQARGTAIVNLLPFEDGEKIASVISCRE 668

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGE 666
           +     L+  ++ G       +    + R G   + +   +++  V +V  GD + +   
Sbjct: 669 FPEDEYLMFATAHGMVKKTAMAAYDRSRRDGIIAINIKDGDRLLGVRRVKPGDKIIMATT 728

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K ++FS DQ+    R   GVR    K       +      G  ++    R Y +    
Sbjct: 729 AGKAIMFSEDQVRATGRDTSGVRGIGMKADAEVLGMEITNGSGELFV-ITERGYGKRTPV 787

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  RGG G    +   R G   +
Sbjct: 788 ADYPEQNRGGQGVYTIQMTDRKGALAA 814



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/349 (10%), Positives = 115/349 (32%), Gaps = 21/349 (6%)

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            + +       +   + +          +   + +++   +   +  I     + +    
Sbjct: 534 EMREIARKFGDKRRTQITGAEKDLNVEDLIADEDMVVTITHTGYVKRIPVESYRAQKRGG 593

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
              S    + D +++     +    EY +       +   +  +    + + +   I   
Sbjct: 594 KGVSGVNLKEDDVIDEMF--IASTHEYVLFFSTKGKVYRLKVHELPEGTRQARGTAIVNL 651

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +           + G +  +        +   +  M       V  +        +    
Sbjct: 652 L---------PFEDGEKIASVISCREFPED--EYLMFATAHGMVKKTAMAAYDRSRRD-- 698

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            + A++ K+GD L         D+I++ +T GKA      + +   G   +    I +  
Sbjct: 699 GIIAINIKDGDRLLGVRRVKPGDKIIMATTAGKAIMFS-EDQVRATGRDTSGVRGIGMKA 757

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKV 656
           + +++   + + + +L V++ +G       ++     R G+    ++++  +     +KV
Sbjct: 758 DAEVLGMEITNGSGELFVITERGYGKRTPVADYPEQNRGGQGVYTIQMTDRKGALAAMKV 817

Query: 657 TG--DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
            G    + ++ E   +L     +I +  R  +GV++ S  +G     + 
Sbjct: 818 VGPQHELLIITEGATVLRVKTAEISQTGRATQGVKMMSVDEGDRVTAVA 866



 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 49/137 (35%), Gaps = 2/137 (1%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++ +   +R+    +  +  +  K    +      + +  + +++  G     P  +   
Sbjct: 733 IMFSEDQVRATGRDTSGVRGIGMKADAEVLGMEITNGSGELFVITERGYGKRTPVADYPE 792

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKT 640
               G+ +  +   +    +    V     +LL+++       V+ +EI    R   G  
Sbjct: 793 QNRGGQGVYTIQMTDRKGALAAMKVVGPQHELLIITEGATVLRVKTAEISQTGRATQGVK 852

Query: 641 FLKVSSEEKMKLVVKVT 657
            + V   +++  V ++T
Sbjct: 853 MMSVDEGDRVTAVARMT 869


>gi|32448345|gb|AAO16801.1| GyrA [Streptococcus pneumoniae]
          Length = 822

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 395/760 (51%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARARPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGM T+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMGTNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L   KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLGQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKEELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----QRRTELMVGEVW--SLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D  + +  +    + F+   +  MSR   GV+  + ++G         I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASV-ITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSG 750


>gi|307256314|ref|ZP_07538097.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306865140|gb|EFM97040.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 896

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/820 (30%), Positives = 388/820 (47%), Gaps = 80/820 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I+N +I IE+L+ +I GPDFPTG  I+  R+ I E+YR GRG  
Sbjct: 182 IPPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGA-IINGRKGIEEAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +   
Sbjct: 241 YVRAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRRE
Sbjct: 301 SIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPKVLNLKQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IRN                     
Sbjct: 360 VVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V   ++ L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKA 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +L+S ++    I  E+ +VK  F           +         A     
Sbjct: 480 LLTEIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+   +  M R
Sbjct: 660 KVSLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMGR 719

Query: 684 -GKGVRLQSYK-----------------------------DGGISDVICFKICEGLTWID 713
              GVR                                  D      +     EG   + 
Sbjct: 720 TATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSLVIPRTEGD-ILT 778

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +        +  R   G +  K   R+GK +++
Sbjct: 779 VTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLV 653
               +V+  +  +   +L V+  G        E    +R  K  + +   E+    +  V
Sbjct: 760 DTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAV 819

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
                D + ++ +   L+   + ++  + R  +GVR+    D      +
Sbjct: 820 QVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSV 868


>gi|257054096|ref|YP_003131928.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017]
 gi|256583968|gb|ACU95101.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017]
          Length = 841

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/774 (29%), Positives = 388/774 (50%), Gaps = 37/774 (4%)

Query: 6   ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++ +        V+ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR++++M + 
Sbjct: 1   MTETLPPNSRGRVEPVDIQQEMQNSYINYAMSVIVSRALPDVRDGLKPVHRRVLYSMYDS 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      + K +R+VG+V+G  HPHGD ++YD+LVRLAQ +  RYPLI GQGNFG+   D
Sbjct: 61  GFRPDRGYNKCSRVVGDVMGNYHPHGDSAIYDALVRLAQRWSMRYPLIDGQGNFGSPGND 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR+  +A  +L+ ++ED VDF D Y+    EP V PS+ PNLL NG SGIA
Sbjct: 121 PAAAMRYTEARLDPLAMEMLRDIEEDTVDFSDNYDGRTQEPDVLPSRIPNLLVNGGSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN++E+ +  +  +DNP+   E+     ++ I GPDFPT G I+   + I 
Sbjct: 181 VGMATNIPPHNLREVVDGVIWALDNPDADEEETLAALMQRIKGPDFPTSGQIL-GTQGIA 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG  R+RA   VEE  +G   +VVTE+PYQV    L+E IA L    +I  + D
Sbjct: 240 DAYRTGRGSIRMRAVVEVEEDAKGRTTLVVTELPYQVNPDNLVENIASLARDGKIAGIAD 299

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           I DES       ++    R     +++ +++  + ++  F +NM  L    VP+ + LD 
Sbjct: 300 IADESNSRGGMRIVITLKRDAVAKVVLNNLYKHTQLQYNFGVNMLALVD-GVPRTLRLDQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +++ ++ H+ +V+ RR+ +R++  + R  +L+GL  A  ++D +I +IR           
Sbjct: 359 MVRHYVNHQIDVIVRRTRYRLRKAEERAHVLRGLAKALDHLDAVIELIRRSPNADEARTG 418

Query: 420 RF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 + E Q  AIL+++LR L  LE  +I  EL  L A+   +  +L+  ++Q   + 
Sbjct: 419 LMELLDIDEVQATAILDMQLRKLAALERQRILDELAELEAKIADLQDVLDKPERQREIVR 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ E+ E +        RRT              + +I +E + V I+  G+ +     
Sbjct: 479 TELLEITEKYGD-----DRRTKIIPYEGD---VSIEDLIAEEDVVVTITRTGYAKRTKTD 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
                K     +     K+ D ++      T D +L  +  G+ Y   A +L   +    
Sbjct: 531 LYRSQKRGGKGVQGATLKQDDIVEHFFVCSTHDWVLFFTNKGRVYRAKAYDLPEANRNAR 590

Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ +  L+    ++ I +      Y+    L++ + KG       ++  +    G   + 
Sbjct: 591 GQHVANLLAFQPDERIASVIQIPNYEVAPYLILGTKKGLVKKSRLADFDSPRSGGLIGIN 650

Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISD 699
           +   +++   V  +  D + +V  + + + F  +   +  M R   GV    + +G    
Sbjct: 651 LREGDELVGAVLASAEDDLLLVSSDGQSIRFHANDEVLRPMGRATSGVLGMRFNEGAELL 710

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            I   I  G   + +    Y +        +  RGG G L  +   + G+ +++
Sbjct: 711 SINV-IKPGTFLLVATEGGYAKRTAVEDYPVQGRGGKGVLTIQHDEKRGRLVAA 763



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 6/152 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           A   D +LL+S+DG++    A + +    G   +  L +  N   ++++  V      LL
Sbjct: 663 ASAEDDLLLVSSDGQSIRFHANDEVLRPMGRATSGVLGMRFNEGAELLSINVIKPGTFLL 722

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT-GDHVAVVGENRKLL 671
           V +  G A      +     R GK  L +  +E   ++   + V   D +  +  +  ++
Sbjct: 723 VATEGGYAKRTAVEDYPVQGRGGKGVLTIQHDEKRGRLVAALIVDADDELYAITSSGGVI 782

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
                ++   SR  KGVRL +  +G     + 
Sbjct: 783 RTPAAEVRRASRQTKGVRLINLGEGNTLLAVA 814


>gi|238061920|ref|ZP_04606629.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149]
 gi|237883731|gb|EEP72559.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149]
          Length = 840

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/765 (30%), Positives = 384/765 (50%), Gaps = 36/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      + 
Sbjct: 25  HDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYV 84

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RYTE
Sbjct: 85  KCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRYTE 144

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT IP 
Sbjct: 145 CKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKIPP 204

Query: 194 HNVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           HN++EI  A    ++NP+     +++ L+E + GPDFPT G ++   ++I ++YR GRG 
Sbjct: 205 HNLREIGAAVQWCLENPDVDEATTLDALIEIVKGPDFPTHG-LIVGTQAIQDAYRTGRGS 263

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            R+RA   VEE  RG  C+VV+E+PYQV    L E+IAELI   ++  + DIRDES+   
Sbjct: 264 IRMRAVVEVEEDKRGRPCLVVSELPYQVNPDNLAERIAELIKEGKLGGIADIRDESSGRT 323

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R     +++ +++  + ++  F  NM  L    VP+ + L   ++ ++ H+
Sbjct: 324 GMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVD-GVPRTLNLAQFIRYYVEHQ 382

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTE 425
            EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     +           + E
Sbjct: 383 IEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIRLLEIDE 442

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  L  E   +  +L   ++Q   ++ E+ E+   
Sbjct: 443 IQATAILDMQLRRLAALERQRILDDLAKLEVEIADLKDILAKPERQRRIVSEELGEIVAK 502

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHS 537
           +        RRT              + +I +E + V I+  G+ +  K           
Sbjct: 503 WGDE-----RRTKIVPFDGE---VSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGG 554

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID 595
             +S    ++ D +       T D +L  +  G+ Y   A  L       +   +  L+ 
Sbjct: 555 KGVSGATLRQDDIVSHFFVCSTHDWMLFFTNKGRVYRAKAYELPEASRVAKGQHVANLLA 614

Query: 596 LNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              ++ I       +      L++ +  G        E  +N   G   + +  E+++  
Sbjct: 615 FQADEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGVIAINLRDEDELVG 674

Query: 653 VVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
              V   D + +V +N + + F+     +  M R   GV    + D  +   +   + EG
Sbjct: 675 AALVAPSDDLLLVSKNAQAIRFNATDEALRPMGRATSGVIGMRFSDEDVLLAMEV-VREG 733

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           L  + +    Y +        +  RGG G L  K   R G  + +
Sbjct: 734 LDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGA 778



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 75/213 (35%), Gaps = 13/213 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTD 561
             ++    +  P  V+ +  G ++  +    D      + A++ ++ D L  A     +D
Sbjct: 623 QIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGVIAINLRDEDELVGAALVAPSD 682

Query: 562 RILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
            +LL+S + +A    A +      G   +  + +  +    ++   V      +LV ++ 
Sbjct: 683 DLLLVSKNAQAIRFNATDEALRPMGRATSGVIGMRFSDEDVLLAMEVVREGLDVLVATNG 742

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSID 676
           G A      E     R GK  L     E+   +   V +   D +  +  N  ++   + 
Sbjct: 743 GYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIHPDDELFAITSNGGVIRTPVK 802

Query: 677 QIPEMS-RGK-GVRLQSYKDGGISDVICFKICE 707
            +     R   GV+L    DG     I     E
Sbjct: 803 PVRRTRDRNTMGVKLMDLPDGVTIVAIARNADE 835


>gi|89891307|ref|ZP_01202813.1| DNA gyrase (type IIA topoisomerase), subunit A [Flavobacteria
           bacterium BBFL7]
 gi|89516338|gb|EAS18999.1| DNA  gyrase (type IIA topoisomerase),  subunit A [Flavobacteria
           bacterium BBFL7]
          Length = 840

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/762 (30%), Positives = 410/762 (53%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+     +KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRGYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGD  AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E IL  +D++ VD +  +++  +EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEEILADIDKETVDTQLNFDDTLNEPTVMPTRIPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L+ ++  PDFPTGG I+   + + ++   GRG  ++R 
Sbjct: 185 NLTEVIDGTVAYIDNNDIEIDELITHVKAPDFPTGG-IIYGYDGVKDAMHTGRGRVKIRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EEV  G  CI+V E+PYQV K+ +I+K A+LI  K++  +  IRDES  +   +++
Sbjct: 244 RVRLEEVK-GRECIIVDELPYQVNKADMIKKTADLINEKKLEGISMIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L     PQ++ +  ++  ++ HR +V+ R
Sbjct: 303 ILKRDAIPNIVINKLYKHTALQSSFSVNNIALVK-GRPQLLNVKEMIHYFVEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IA+IR+    ++ +  ++ RF L+E Q  AI
Sbjct: 362 RTEFELRKAEERAHILEGLIIASDNIDEVIALIRSSSNGEEAREKLIKRFELSEIQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E ++L+A    +  +L   +++ + I  E+ E+KE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRNEYNDLIATITDLKDILARKERRMDIIKEELIEIKEKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+       A      + MI  E + + IS+ G+I+              V   A 
Sbjct: 480 ---RRSQI---EYAGGDLSIEDMIADEQVVITISHAGYIKRTPITEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             ++ D L+          +L  +  GK + +    +  G    +  AIQ LI++  + +
Sbjct: 534 TTRDEDFLEDIFVGTNHQYMLFFTEKGKCFWMRVYEIPEGSRTSKGRAIQNLINIEQDDN 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y ++  +++ + KG        +       G   + +   + +   
Sbjct: 594 VKAVICTQDIKDEEYINSHYVIMCTKKGVVKKTSLEQYSRPRTNGINAITIREGDTLLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
              TGD HV +  ++ K + F   +   M R   GVR     D     +    + +    
Sbjct: 654 KLTTGDSHVMLGLKSGKAIRFDEAKTRAMGRNASGVRGIRLADDNDEVIGMVAVNDMDSN 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + + Y +  +        RGG G        ++G  ++
Sbjct: 714 ILVVSEKGYGKRSSLDDYRETNRGGKGVKTISVTEKTGGLVA 755



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 6/194 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+      +  +  +  ++A+  +EGD+L  A        ++L    GKA         +
Sbjct: 622 VVKKTSLEQYSRPRTNGINAITIREGDTLLEAKLTTGDSHVMLGLKSGKAIRFDEAKTRA 681

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
              +   ++ +   + N +++     +     +LVVS KG        +     R GK  
Sbjct: 682 MGRNASGVRGIRLADDNDEVIGMVAVNDMDSNILVVSEKGYGKRSSLDDYRETNRGGKGV 741

Query: 642 LKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
             +S  EK   +  +  VT D  + ++ ++   +   +  +  M R  +GVRL + K   
Sbjct: 742 KTISVTEKTGGLVALKNVTDDDGLMIINKSGVAIRIDVKNLRVMGRATQGVRLINLKGND 801

Query: 697 ISDVICFKICEGLT 710
               +     E  +
Sbjct: 802 SIAAVAKVAQEEDS 815


>gi|302531362|ref|ZP_07283704.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
 gi|302440257|gb|EFL12073.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
          Length = 875

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/773 (30%), Positives = 388/773 (50%), Gaps = 36/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ +     + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPV RRI+++M + G
Sbjct: 1   MTETLPPEHDRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVARRILYSMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + K +R+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   D 
Sbjct: 61  FRPDRGYNKCSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSLRYPLIDGQGNFGSSGNDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+R+  +A  +L  ++ED VDFRD Y+    EP V PS+FPNLL NG SGIAV
Sbjct: 121 AAAMRYTESRLAPLAMQMLADIEEDTVDFRDNYDGRTQEPDVLPSRFPNLLVNGGSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ E  +  ++NPE + ++LL      I GPDFPT  +I+     I +
Sbjct: 181 GMATNIPPHNLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMIL-GTSGIED 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG  R+RA   VEE  +G   +VV+E+PYQV    L+E IA L+   +I  + DI
Sbjct: 240 AYRTGRGSIRMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIAHLVRDGKITGIADI 299

Query: 302 RDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DES       ++    R     +++ ++F  + ++  F +NM  L    VP+ + LD I
Sbjct: 300 ADESNSRSGMRIVITIKRDAVAKVVLNNLFKHTQLQQNFGVNMLALVDD-VPRTLRLDQI 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           ++ ++ H+ +V+ RR+ FR++  + R  IL+GL+ A   +DE+IA+IR            
Sbjct: 359 IRHYVKHQVDVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPSADEARPGL 418

Query: 421 F---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + E Q  AIL+++LR L  LE  +I   L  +  E   +  +L   ++Q + I  
Sbjct: 419 MSLLEIDEIQATAILDMQLRRLAALERQRIIDTLAEIELEIADLKDILEKPERQRSIIRD 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+ + +        RRT              + +I +E + V I+  G+ +      
Sbjct: 479 ELMEIVDKYGD-----DRRTQIIPFDGD---VSVEDLIAQEDVVVTITRTGYAKRTKTDL 530

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
               K     +     K+ D ++      T D IL  +  G+ Y   A +L   +    G
Sbjct: 531 YRSQKRGGKGVQGATLKQDDIVQHFFVCSTHDWILFFTNKGRVYRAKAYDLPEANRNARG 590

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L+    ++ I        Y+    L++ + +G     + ++  +N   G   + +
Sbjct: 591 QHVANLLAFQPDEQIAQVIEIPNYEVAPYLVLATKRGLVKKTKLTDFDSNRAGGLIAINL 650

Query: 645 SSEEKMKLVVK-VTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDV 700
              +++   V     D + +V    + + F      +  M R   GV    + DG     
Sbjct: 651 REGDELMGAVLAAAEDDLLLVSAGGQSIRFHATDEALRPMGRPTSGVLGMRFNDGDELLG 710

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           I     +    + +   +Y +        +  RGG G L  +   + G+ + +
Sbjct: 711 ISVVKPDKF-LLVATDGAYAKRTPIEDYPVQGRGGKGVLTIQHDSKRGRLVGA 762



 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 82/228 (35%), Gaps = 12/228 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA------LHFKEGDSLKIA 554
           +        ++    E  P  V+ + RG ++  K    D +       ++ +EGD L  A
Sbjct: 600 QPDEQIAQVIEIPNYEVAPYLVLATKRGLVKKTKLTDFDSNRAGGLIAINLREGDELMGA 659

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           + A   D +LL+S  G++    A +      G   +  L +  N   +++   V      
Sbjct: 660 VLAAAEDDLLLVSAGGQSIRFHATDEALRPMGRPTSGVLGMRFNDGDELLGISVVKPDKF 719

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT-GDHVAVVGENRK 669
           LLV +    A      +     R GK  L +  +    ++   + V   D +  +  +  
Sbjct: 720 LLVATDGAYAKRTPIEDYPVQGRGGKGVLTIQHDSKRGRLVGALIVDEDDELFAITSSGG 779

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           ++      + +  R  KGVRL +  DG     +     EG    +   
Sbjct: 780 VIRTPARDVRKAGRQTKGVRLMNLGDGTTLLAVARNADEGSDVANGGE 827


>gi|159035682|ref|YP_001534935.1| DNA gyrase subunit A [Salinispora arenicola CNS-205]
 gi|157914517|gb|ABV95944.1| DNA gyrase, A subunit [Salinispora arenicola CNS-205]
          Length = 839

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/765 (30%), Positives = 376/765 (49%), Gaps = 36/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      + 
Sbjct: 24  HDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYV 83

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RYTE
Sbjct: 84  KCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYPLVDGNGNFGSPGNDPAAAMRYTE 143

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT IP 
Sbjct: 144 CKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLVNGSEGIAVGMATKIPP 203

Query: 194 HNVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           HN++EI  A    +++PE     ++E LL  + GPDFPT G ++  +  I ++YR GRG 
Sbjct: 204 HNLREIGAAVQWCLEHPEADEASTLEALLGIVKGPDFPTHG-LIVGQAGIQDAYRTGRGS 262

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            R+RA   VEE  RG   +VV+E+PYQV    L E+IAELI   ++  + DIRDES+   
Sbjct: 263 IRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIREGKLGGIADIRDESSGRT 322

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R     +++ +++  + ++  F  NM  L    VP+ + L   ++ ++ H+
Sbjct: 323 GMRLVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVD-GVPRTLNLAQFIRSYVEHQ 381

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTE 425
            EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR                 + E
Sbjct: 382 IEVIRRRTAFRLRKAEERAHILRGLAKALDALDEVIALIRRSPTVDDARQGLIRLLDIDE 441

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  L  E      +L   ++Q   ++ E+ E+   
Sbjct: 442 IQATAILDMQLRRLAALERQRILDDLVKLELEIADFKDILAKPERQRRIVSEELGEIVAK 501

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
           +        RRT              + +I +E + V I+  G+ +  K  +        
Sbjct: 502 WGD-----DRRTQIIPFDGE---VSMEDLIAREDVVVTITRTGYAKRTKVDAYRSQRRGG 553

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID 595
             +S    ++ D +       T D IL  +  G+ Y   A  L       +   +  L+ 
Sbjct: 554 KGVSGASLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLA 613

Query: 596 LNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              ++ I              L++ +  G     +  E  +N   G   + +  ++++  
Sbjct: 614 FQPDEQIAQIIEISDYQVAPYLVLATKNGVVKKTKLEEFDSNRSGGIIAINLREDDELVG 673

Query: 653 VVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
              V     + +V +N   + F+     +  M R   GV    + +      +   +  G
Sbjct: 674 AALVAPEQDLLLVSKNALAIRFNASDEALRPMGRATSGVIGMRFSEDDELLAMEV-VRHG 732

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           L  + +    Y +        +  RGG G L  K   R G  + +
Sbjct: 733 LDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGA 777



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 6/120 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           +  + + +++   V      +LV ++ G A      E     R GK  L     E+   +
Sbjct: 715 MRFSEDDELLAMEVVRHGLDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGL 774

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS-RGK-GVRLQSYKDGGISDVICFKICE 707
              V +   D +  +  N  ++   +  +     R   GV+L    DG     I     E
Sbjct: 775 VGAVVIDPDDELFAITSNGGVIRTPVKPVRRTRDRNTMGVKLMDLPDGVTIVAIARNADE 834



 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 3/137 (2%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
           +   +R +   +  +  + F E D L           +L+ +  G A   P         
Sbjct: 698 SDEALRPMGRATSGVIGMRFSEDDELLAMEVVRHGLDVLVATNGGYAKRTPIEEYPVQGR 757

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT-RK--GKTFL 642
            G+ +           +V A V D   +L  ++S G         +     R   G   +
Sbjct: 758 GGKGVLTAKITERRGGLVGAVVIDPDDELFAITSNGGVIRTPVKPVRRTRDRNTMGVKLM 817

Query: 643 KVSSEEKMKLVVKVTGD 659
            +     +  + +   +
Sbjct: 818 DLPDGVTIVAIARNADE 834


>gi|290967785|ref|ZP_06559338.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L]
 gi|290782144|gb|EFD94719.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L]
          Length = 817

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/762 (32%), Positives = 393/762 (51%), Gaps = 30/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +    + V  V L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+   
Sbjct: 2   DEQHSDKVLPVCLENEMQTSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVGEV+GK HPHGD+SVYD+ VRLAQ F  RYPL+ G GNFG++DGDSAAA 
Sbjct: 62  KPYKKSARIVGEVLGKYHPHGDRSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM ++   +L  +D++ VDF   Y+    EP V PSK PNLL NG++GIAVGMAT
Sbjct: 122 RYTEVRMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPSKIPNLLVNGSAGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  + LID P+ S+E+++  I GPDFPTG  I   RE I+++Y  GRG 
Sbjct: 182 NIPPHNLGEVVDGCVTLIDKPDASLEEIMTKIKGPDFPTGAKI-MGREGILKAYATGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++R+   VE + +G   IVVTEIPYQV K+R+IE IAEL   + I  +  +RDES    
Sbjct: 241 VKMRSCAAVEPMTKGKNRIVVTEIPYQVNKARVIESIAELTRNREIDGITALRDESDRKG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++      ++PD+++  ++  + ++  F + M  L     P+V+ L  +L+ +L H+R
Sbjct: 301 LRIVIELRADVNPDIILNKLYKHTQLQETFGIIMLALVD-GHPRVLSLLQVLQYYLGHQR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
           +V+ RR  F +     R  IL+GLLIA  +IDE+I  IR     +      ++ F LT+ 
Sbjct: 360 QVITRRCRFELDKALARAHILEGLLIALDHIDEVIRTIRESATDETAKTSLMTAFGLTDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E   L      + S+L   ++    +  E+ E K+ F
Sbjct: 420 QAVAILDMRLRRLTGLEREKIEEEYRELEERIAYLRSVLADDRKVMEIVKTELLEAKKRF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT              + MI  E + + ++ RG+++ + ++          
Sbjct: 480 GD-----VRRTQLA---ADTSELGVEDMIPDERMVLTLTRRGYMKRINANVYHTQNKGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---GRGHGEAIQLLID 595
            +  +  K+ D++   L+      +L  +  G+ Y L A  +         G A   ++ 
Sbjct: 532 GIKGMGTKDEDAVNHLLYTSALHTVLFFTNFGRVYRLKAYEIPEANSRNSKGIAAINILP 591

Query: 596 LNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L+  + +         D +  L + +  G     E +E     R G   + +   + +  
Sbjct: 592 LSTGEKVNALIDLDQADPSMNLFMATENGLVKKTELAEFKNVRRNGLIAISLIEGDHLAK 651

Query: 653 VVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V    G   + +  +    + F+   +  M R  +GVR  S   G    +    +     
Sbjct: 652 VRLTNGKQRIILATKLGMAICFNESDVRPMGRNTRGVRGISLAPGDRV-IGADVLAPDCQ 710

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +   + +  N     +  RGG G+   K  P++G  + 
Sbjct: 711 VLTVSEEGFGKRNNMDAYKIQLRGGKGAKNFKITPKTGVIVG 752



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 70/206 (33%), Gaps = 9/206 (4%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
               +  E   V  +     ++++ +   L A+   EGD L      +   RI+L +  G
Sbjct: 611 MNLFMATENGLVKKTELAEFKNVRRN--GLIAISLIEGDHLAKVRLTNGKQRIILATKLG 668

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
            A      ++     +   ++  I L     ++ A V    C++L VS +G         
Sbjct: 669 MAICFNESDVRPMGRNTRGVRG-ISLAPGDRVIGADVLAPDCQVLTVSEEGFGKRNNMDA 727

Query: 631 IIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE-MSR-G 684
                R GK      +   +   + + V      + ++  N  ++   I+ I     R  
Sbjct: 728 YKIQLRGGKGAKNFKITPKTGVIVGVEVVREDQELMLITTNGIVIRTDIESIGIKKGRNT 787

Query: 685 KGVRLQSYKDGGISDVICFKICEGLT 710
            GV++Q  +       +     +G  
Sbjct: 788 SGVKIQKLEGDDKVAALDTITVDGEE 813


>gi|160932415|ref|ZP_02079805.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753]
 gi|156868374|gb|EDO61746.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753]
          Length = 859

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/766 (31%), Positives = 394/766 (51%), Gaps = 30/766 (3%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N+   N     NV  V ++  +++ +L Y++S I  RA+PD+RDG KPVHRRI+++  E 
Sbjct: 14  NMDEKNMEPRSNVIEVDIQKEMQKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYSQYED 73

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL    A+KK A  VG V+G+ HPHGD SVYD+LVRLAQ F   YPL+ G GNFG++DGD
Sbjct: 74  GLTPDKAYKKCATTVGNVLGRYHPHGDASVYDALVRLAQDFSMHYPLVDGHGNFGSVDGD 133

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AAYRYTEARM++++  +L  +D+D V+F   Y++   EP V PS+FPNLL NG++GIA
Sbjct: 134 PPAAYRYTEARMSKISTEMLTDIDKDTVNFISNYDDSRKEPEVLPSRFPNLLVNGSTGIA 193

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E  +A   LIDNP+  +E L+EYI GPDFPTG +I   R  I  +Y 
Sbjct: 194 VGMATNIPPHNLGETIDAVCYLIDNPDAGLEDLMEYIKGPDFPTGAMI-MGRAGIRAAYA 252

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   VRA   + E   G + I+VTE+PYQV K+RLIE IA+++  KRI  + +I D 
Sbjct: 253 TGRGKITVRAVAEIVEEKNGRFKIIVTELPYQVNKARLIESIADMVKDKRIEGISNIDDH 312

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   +     R   P +++  ++  + M+T F + M  +     P+ + L  +L+E+
Sbjct: 313 SDRNGMHIEIDLKRDASPQIVLNQLYSYTQMQTTFGVIMLAIV-NGEPKTLTLKEMLQEY 371

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRF 421
           +  + EV+ RR+ + ++    R  IL+GL IA  NIDEII+IIRN          M  RF
Sbjct: 372 IKFQEEVITRRTIYDLKKARERAHILEGLKIALDNIDEIISIIRNSKDRPTAKSRMTERF 431

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L + Q +AI+ +RL  L  LE  +I+ EL  L  + +  + +L   ++    +  E+  
Sbjct: 432 GLDDVQTEAIVQMRLGQLTGLERQKIEDELAALELKIKDYEDILAHEERVKAIVKDELMG 491

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--- 538
           ++  ++             E+         + +I +E   + ++N G+++  K  +    
Sbjct: 492 IRNKYADERKT--------EIMAVSGEVDIEDLIPQEECVLTLTNFGYVKRQKMDTYRTQ 543

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ-- 591
                 +S +  +E D        ++ D ++  ++ G+ Y L    +  G    + +   
Sbjct: 544 RRGGRGISGMSRREEDVATEMFVINSHDYVMFFTSTGRVYRLKCYEIPEGSRTSKGMNIA 603

Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+ +   + + +      +D    L++V+  G       S   +  + G   +++   +
Sbjct: 604 NLLPITAEEKVTSMIRVPEFDEEKYLVMVTRNGIIKRTLLSAYNSARKGGLIAIELDEGD 663

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  V    G + + V  +    + F    +  + R  +GV+  +  +     V   ++ 
Sbjct: 664 ELAWVRVTDGSNELIVATKKGMAIRFHERDVRLVGRTARGVKAITLGEDDCV-VGMARLR 722

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           EG   +  +   Y R        +  RGG G L      + G   +
Sbjct: 723 EGGKVLTVSETGYGRLSPISDYRIQYRGGKGLLNYHV-DKYGDVAA 767



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 4/110 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK--VSSEEKMK 651
           I L  +  +V         K+L VS  G   +   S+     R GK  L   V     + 
Sbjct: 707 ITLGEDDCVVGMARLREGGKVLTVSETGYGRLSPISDYRIQYRGGKGLLNYHVDKYGDVA 766

Query: 652 LVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
            +  V   D V ++  +  ++    D I E +R  KGVR+    +     
Sbjct: 767 AIKVVDLDDDVILISADGVIIRIQADSIRECARPSKGVRVMRIGEDNKVV 816


>gi|126642661|ref|YP_001085645.1| DNA gyrase [Acinetobacter baumannii ATCC 17978]
          Length = 881

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/804 (30%), Positives = 397/804 (49%), Gaps = 95/804 (11%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RMT++A  +L  +++D VD+
Sbjct: 61  YETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDW 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
            D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+ E+  A LA  DNP ISI
Sbjct: 121 EDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNMTEVVNACLAYADNPNISI 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV-GRGSWCIVVTEI 273
           E L+EYI GPDFPTGG I+  +  IV++YR G+G   +R ++  EE    G   IV TEI
Sbjct: 181 EGLMEYITGPDFPTGG-IIYGKSGIVDAYRTGKGRLHIRGKYHFEEDEKTGRTTIVFTEI 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+R+IE+IAEL+  K++  + ++RDES ++   +     R  + ++++ ++F+ +
Sbjct: 240 PYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDLKRGENAEVVVNNLFLNT 299

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +E  F +NM  L     P++M L  I+  ++ HR+EV+ RR+ F ++    R  IL+GL
Sbjct: 300 QLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQEVVTRRTMFELRKARERGHILEGL 358

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVS---------------------------------- 419
            +A  NIDEII  I+    P                                        
Sbjct: 359 TVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKAGAISVRPDEIEGEDPN 418

Query: 420 --------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                    + L+  QV AIL LRL  L  LE+ ++ +E   +L +  ++ ++LN     
Sbjct: 419 RPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEILGQIAELTAILNDFNLL 478

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-- 529
              I  E+ +V + +  +     RRT   E   +     ++ +I +E + + +S  G+  
Sbjct: 479 MGVIREELAQVLQQYGDA-----RRTEIVE---SRVDFCREDLIPEEQVVLTVSQTGYAK 530

Query: 530 ------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                  ++ +      SA   K+ D ++  + A     +L  +  GK Y L    +   
Sbjct: 531 TQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRLKVFEVPQA 590

Query: 584 RGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
               +   I  L+ L+  + +        +     + + ++ G    VE  +       G
Sbjct: 591 SRGAKGRPIVNLLPLDATETVTAILPLTEFPENHYVFMATASGTVKRVELEQFANIRSNG 650

Query: 639 KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS----- 691
              ++++ E+ +  V    G+  + +     K + F+   +  M R  KGVR        
Sbjct: 651 LRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFAS 710

Query: 692 --YKDGGISD--------------------VICFKICEGLTWIDSAGRSYNRSENDLLGW 729
               +                         V    + E    + ++   Y +        
Sbjct: 711 STLSEEDADVENDDSDDNDDSADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFP 770

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
             KRGG G +  K   R+G+ + +
Sbjct: 771 TKKRGGKGVIAIKTSERNGELVGA 794



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT 657
            IV+  V   T ++L  S+ G       ++     R GK  + + + E   ++   V + 
Sbjct: 739 RIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSID 798

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICF 703
               + ++ +   L+     ++    R  +GVRL    ++  +  V+  
Sbjct: 799 ETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 847


>gi|332667547|ref|YP_004450335.1| DNA gyrase subunit A [Haliscomenobacter hydrossis DSM 1100]
 gi|332336361|gb|AEE53462.1| DNA gyrase, A subunit [Haliscomenobacter hydrossis DSM 1100]
          Length = 845

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/768 (30%), Positives = 407/768 (52%), Gaps = 37/768 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            +++ +  V++   ++  Y+ Y++S I  RA+PD+RDG KPV RR+++ MS++G+ +  A
Sbjct: 2   PLDQRIIPVNIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVQRRVMYGMSDLGVTYNKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RYPLI  QGNFGNIDGD  AA RY
Sbjct: 62  HKKSARIVGEVLGKYHPHGDTSVYDTMVRMAQDWSLRYPLIDPQGNFGNIDGDGPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM ++A+ ++  +++D V+F + +++  +EP V P++FPNLL NG +GIAVGMAT++
Sbjct: 122 TEARMRKIADELMADLEKDTVNFTNNFDDTLTEPSVMPTRFPNLLVNGATGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+ +  +A ID+PEI+I++L++YI+ PDFPTGG I+     I + +R GRG   
Sbjct: 182 MPHNLGEVIDGVIATIDDPEITIDELMKYILAPDFPTGG-IIYGMSGIRDGFRTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  +E    G   I++TE+PYQV  S L EKIA+L+  KRI  +  I +ES      
Sbjct: 241 LRGKVEIETTKTGKEQIIITEVPYQVNISSLEEKIADLVNEKRIDGISAISNESNRMGIR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R     +++  ++  S +++ + +N   L     P  + +  +++E++  R EV
Sbjct: 301 VVLDVKRDAIAKVVLSQLYKYSPLQSSYGINNVALVD-GRPYTLNIKDMIEEFIKFRLEV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++  + R  IL+GLLIA  ++D++IA+IR            +S F L+E Q 
Sbjct: 360 VVRRTKFDLRKAEERAHILEGLLIALDHLDQVIALIRASRTVDEAREGLMSNFGLSEIQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  ++++E + +    + ++S+LNS + + + I  E+ E+K  F  
Sbjct: 420 KAILDMRLQRLTGLERDKVRNEYNEIKKLIDYLNSILNSEELRRSIIKDELAEIKANFGD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
           +     RRT       AD     + MI++E + + IS+ G+I+                 
Sbjct: 480 A-----RRTVI---EAADGEINMEDMIKEEEVVITISHLGYIKRTPVSEFRQQSRGGRGS 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNH 598
                ++ D ++     +T   +LL ++ G+ Y L    +        G AIQ ++ +  
Sbjct: 532 RGSKTRDEDFIEHMFVTNTHHYLLLFTSAGRCYWLKGYEIPEAAKTATGRAIQNILAIPK 591

Query: 599 NQDIVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
              +    V        +     ++  + +G                G   + ++  +++
Sbjct: 592 EDKVKAFIVIESLVDREFVDNHYIMFCTQQGVIKKTPVEAFSRPRAGGINAITINEGDQL 651

Query: 651 KLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKI 705
                  G+H V +       + F+   +  M R   GVR  +  + G   +  ++C   
Sbjct: 652 LEAWLTGGNHEVFLASRRGYAVRFNEAGVRSMGRSAAGVRGMTLAEDGKDAVVGMVCIAP 711

Query: 706 CE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +   T +  + +   +        L KRGG G    +   ++G  ++
Sbjct: 712 DDKESTLLVVSEKGNGKRSEVEEYRLTKRGGKGVKTIQITDKTGMLVA 759



 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/498 (12%), Positives = 144/498 (28%), Gaps = 26/498 (5%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G     + + ++E +   R    VR R   +         ++  +   +     +  +  
Sbjct: 338 GRPYTLNIKDMIEEFIKFRLEVVVR-RTKFDLRKAEERAHILEGLLIALDHLDQVIALIR 396

Query: 289 LII--AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 +    L      S    + +L  + + L      +     ++++       ++L
Sbjct: 397 ASRTVDEAREGLMSNFGLSEIQAKAILDMRLQRLTGLERDKVRNEYNEIKKLIDYLNSIL 456

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
           +   + + +  D + +              +   +     +   + ++I   ++  I   
Sbjct: 457 NSEELRRSIIKDELAEIKANFGDARRTVIEAADGEINMEDMIKEEEVVITISHLGYIKRT 516

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
             +E + +         ++ + +  +      +     Y +           +  +    
Sbjct: 517 PVSEFRQQSRGGRGSRGSKTRDEDFIEHMF--VTNTHHYLLLFTSAGRCYWLKGYEIPEA 574

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I   +       +   +   +     E     +      ++      V+   
Sbjct: 575 AKTATGRAIQNIL-------AIPKEDKVKAFIVIESLVDREFVDNHYIMFCTQQGVIKKT 627

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
                S       ++A+   EGD L  A        + L S  G A       + S    
Sbjct: 628 PVEAFSRPRAG-GINAITINEGDQLLEAWLTGGNHEVFLASRRGYAVRFNEAGVRSMGRS 686

Query: 587 GEAIQLLIDLNHNQD----IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
              ++ +      +D    +V     D    LLVVS KGN    E  E     R GK   
Sbjct: 687 AAGVRGMTLAEDGKDAVVGMVCIAPDDKESTLLVVSEKGNGKRSEVEEYRLTKRGGKGVK 746

Query: 643 KVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD--- 694
            +   +K   +  +  V   D + +   +  ++  +I  +  M R  +GVR+    D   
Sbjct: 747 TIQITDKTGMLVAIKSVKDDDDLMITNRSGIIIRMAIGGLRVMGRATQGVRVIRLDDDDD 806

Query: 695 -GGISDVICFKICEGLTW 711
              ++ V      EG   
Sbjct: 807 IADVTVVKHIAEVEGEEV 824


>gi|288958669|ref|YP_003449010.1| topoisomerase IV subunit A [Azospirillum sp. B510]
 gi|288910977|dbj|BAI72466.1| topoisomerase IV subunit A [Azospirillum sp. B510]
          Length = 741

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/748 (52%), Positives = 537/748 (71%), Gaps = 9/748 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +   N   E  +    L  AL ERYL+YALSTI  R++PD+RDG KPVHRR++ AMS++ 
Sbjct: 1   MKPQNPASE--ILEKPLADALGERYLSYALSTIMSRSLPDVRDGLKPVHRRLLFAMSQLR 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L+     KKSAR+VG+VIGK HPHGD SVYD+LVRLAQ F  RYPL+ GQGNFGNIDGD+
Sbjct: 59  LEPTTPPKKSARVVGDVIGKFHPHGDSSVYDALVRLAQDFSVRYPLVDGQGNFGNIDGDN 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T+VA+ +L+G+DEDAVDFR TY+ +  EP V P+ FPNLLANG+SGIAV
Sbjct: 119 AAAMRYTEARLTEVAKALLEGIDEDAVDFRPTYDGDGEEPAVLPANFPNLLANGSSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HNV EIC+A   LI + +  IE L+ ++ GPDFPTGG++VESR+++VE+YR 
Sbjct: 179 GMATNIPPHNVGEICDALRHLIKHRDAPIETLVGFMPGPDFPTGGVLVESRQNVVEAYRT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FR+RARW VE++ +G+W IVVTE+PYQVQK+RL+EKIAEL++AK++ LL+D+RDES
Sbjct: 239 GRGAFRLRARWEVEKLAQGTWQIVVTEMPYQVQKARLVEKIAELLLAKKLILLDDVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVR+VL PK+R++DP++LM S+F  +D+E RF LNMNVL    VP+VM L  +L+ +L
Sbjct: 299 AEDVRLVLVPKSRNVDPEVLMASLFQATDLEIRFSLNMNVLGADHVPRVMNLREVLQAFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HR EVL RRS+ R+  ID R+E+L G L AYLN+DE+I IIR ED+PK  ++  F+LT+
Sbjct: 359 DHRHEVLVRRSNHRLTQIDHRLEVLGGYLAAYLNLDEVIRIIREEDEPKQELIRAFTLTD 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAILN+RLR+LRKLEE +I+ E + L  EK  +  LL     +W +IA  + E+K+ 
Sbjct: 419 VQADAILNMRLRNLRKLEEMEIRREHEALTGEKNGLLELLGDEALRWKRIAEGVAEIKKK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--LSAL 543
           F     LG+RRT   + + A       A++E+EP+TV+ S +GWIR+++ H  D     +
Sbjct: 479 FGT-GALGKRRTDVAD-APAVIEVPLDALVEREPVTVICSAKGWIRTVRGHLTDAEAEDV 536

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            +K+GD         TTD++L+ +++GK +T+    L  GRG GE ++L+IDL ++ DIV
Sbjct: 537 KYKDGDERGFVERCETTDKLLVFASNGKFFTIGVDKLPRGRGFGEPVRLMIDLGNDVDIV 596

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
             F +     LLVVS  G  F VEE+E++A TR GK  L +   +  ++   V+GD VA+
Sbjct: 597 DLFRHQPGRTLLVVSEDGRGFRVEEAEVLAQTRSGKQVLNLEDGKSARICQPVSGDTVAI 656

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           +G NRK+L+F +DQ+P M+RGKGV+LQ YKD  ++DV  F + EGL+W  +  R++N + 
Sbjct: 657 IGNNRKMLVFPLDQVPVMTRGKGVQLQKYKDASVADVKTFTLAEGLSWK-NGERNFNVT- 714

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            DL GW+G R G G + P GFP++ +F+
Sbjct: 715 -DLTGWMGDRAGQGKMPPNGFPKNNRFM 741


>gi|227831839|ref|YP_002833546.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
 gi|262183104|ref|ZP_06042525.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
 gi|227452855|gb|ACP31608.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
          Length = 862

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/773 (30%), Positives = 391/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++N  + + ++ + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDNNGDLFDRIQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQP+  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPDRGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQPWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVDFAPNYDGKTQEPTILPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   L+DNP  S E+     +E + GPDFPT G ++   + I +
Sbjct: 181 GMATNIPPHNLNELAEAIYWLLDNPNASEEEALAACMERVKGPDFPTAG-LIVGDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EEVG     IV+TE+PYQV    +I  IAE ++  +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEEVG-NRQTIVITELPYQVNPDNMISNIAESVVNGKIAGIAKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ +++  S ++T F  NM  +    VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVD-GVPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVM 417
           L  ++AH+ EV+ RR+ FR+   ++R  IL+GL+ A   +DE+IA+IR      + +  +
Sbjct: 358 LSYYVAHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEAREGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E Q DAIL +RLR L  LE  +I  EL  +      +  +L   ++Q   +  
Sbjct: 418 MQLLGVDEIQADAILAMRLRRLAALERQKIIDELAEIEEIIADLKDILAREERQREIVHD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+ E +        RRT       A      + +I +E + V I+  G+ +      
Sbjct: 478 ELEEIVEKYGDE-----RRTQIV---AASGDVSDEDLIARENVVVTITATGYAKRTKVDA 529

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
               K     +     K+ D +K      T D IL  +  G+ Y L A  L        G
Sbjct: 530 YKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAGRTARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + +G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +     V  GD + +  E  + + F+ D   +  M R   GV+   ++       
Sbjct: 650 NEGDALIGAQLVNEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFRGDDQLLS 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   + +G   + +    Y +           RGG+G +  K  P+ GK +++
Sbjct: 710 MSV-VSDGQFLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIAA 761



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 73/206 (35%), Gaps = 12/206 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ + +G ++  +           L A++  EGD+L  A   +  D ILL S 
Sbjct: 613 YEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVNEGDDILLTSE 672

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            G+A    A +      G   A    +    +  +++  V      LLV +S G      
Sbjct: 673 QGQAIRFTADDDQLRPMGRATAGVKGMRFRGDDQLLSMSVVSDGQFLLVATSGGYGKRTA 732

Query: 628 ESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR 683
             E     R G   +         K+   + V   D +  +     ++   ++QI   SR
Sbjct: 733 IEEYTPQGRGGLGVMTFKYTPKRGKLIAAISVDEDDEIFAITSAGGVVRTEVNQIRPSSR 792

Query: 684 GK-GVRLQSYKDGGISDVICFKICEG 708
              GVRL +  D      I   + + 
Sbjct: 793 ATMGVRLVNLADDVELLAIDRNVEDD 818


>gi|291520354|emb|CBK75575.1| DNA gyrase subunit A [Butyrivibrio fibrisolvens 16/4]
          Length = 844

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/779 (31%), Positives = 398/779 (51%), Gaps = 46/779 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  + +N+  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+     
Sbjct: 2   DDKIFDNIHDVDLKETMETSYIDYAMSVIASRALPDVRDGLKPVQRRVLFSMIELNNGPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG+ DGD AAA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAM 121

Query: 130 RYTEARMTQVAELIL------------QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           RYTEAR+++++  +             + +D D VDF   ++E + EP V P+++PNLL 
Sbjct: 122 RYTEARLSKISMTMFGINYKDEKFTTGKDIDMDGVDFMPNFDETEKEPTVLPARYPNLLV 181

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGII 232
           NGT+GIAVGMAT+IP HN++EI  A   +IDN      E  I++LLE + GPDFPTGG+I
Sbjct: 182 NGTTGIAVGMATNIPPHNLREIIGAVNRIIDNQVEEDRETEIDELLEIVKGPDFPTGGVI 241

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
           +  +  I E+YR GR   RVRA   +E +  G   IVVTE+PY V K+RLIE IA+L+  
Sbjct: 242 L-GKAGIEEAYRTGRAKIRVRAVSEIEPMDNGKNRIVVTELPYMVNKARLIENIAKLVKD 300

Query: 293 KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           K+I  + D+RDES+ +   V     R ++P++++  ++  + ++  F + M  L     P
Sbjct: 301 KKIDGITDLRDESSREGIRVCIELRRDVNPNIILNQLYKHTQLQDTFGVIMLALV-NNQP 359

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           +++ L  +L  +L H+++V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR+   
Sbjct: 360 KILNLKQMLVHYLDHQKDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIQIIRSSAD 419

Query: 413 PK---PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                  ++ RF L++ Q  AI+++RLR+L  LE  +I+ E D+L     K+ ++L   K
Sbjct: 420 VNSAKATLMERFGLSDAQAQAIVDMRLRALTGLERDKIQKEYDDLQILIGKLKAILGDEK 479

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
                I  EI E+ + +        RRT+       +     + MI      V  +  G+
Sbjct: 480 ILLGVIKTEITEIADKYGD-----DRRTSI---GFDEFDISMEDMIPVTNTVVTFTKLGY 531

Query: 530 IRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+ +              +  +   + D +   L   + D +L  +  G+ Y + A  + 
Sbjct: 532 IKRMNEDNFKAQHRGGKGIKGMETIDDDYVTEMLMMSSHDYLLFFTNKGRVYRIKAYEIP 591

Query: 582 S--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  G AI  ++ L  ++ I        Y     L + ++ G     + +E     +
Sbjct: 592 ESSRTSRGIAIVNILQLQPDEKITAMIPIEDYHEDKYLFMATADGFVKKTKITEYDNIRK 651

Query: 637 KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
            G T + +  ++ +  V    GD  V +V +  + + FS  ++    R   GV   +   
Sbjct: 652 NGLTAITLRDDDTLIEVKLTDGDEDVIMVTKYGQAIRFSETEVRSTGRATMGVIGMNLSA 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +   I +G + +  +     +           RGG G    K   ++G  + +
Sbjct: 712 DDEIIGMQL-ISQGESLMTVSENGLGKCTLMTEFNTIHRGGKGVKCYKITEKTGNLIGA 769


>gi|217965928|ref|YP_002351606.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23]
 gi|255022517|ref|ZP_05294503.1| DNA gyrase, A subunit [Listeria monocytogenes FSL J1-208]
 gi|290892045|ref|ZP_06555042.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071]
 gi|217335198|gb|ACK40992.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23]
 gi|290558639|gb|EFD92156.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071]
 gi|307569530|emb|CAR82709.1| DNA gyrase, A subunit [Listeria monocytogenes L99]
          Length = 842

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/760 (31%), Positives = 405/760 (53%), Gaps = 28/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+H++ E+ +  LAL  NPEI+I  L+EYI GPDFPT G+I   R  I  +Y  GRG  
Sbjct: 183 IPTHHLGEVIDGVLALSHNPEITIRDLMEYIPGPDFPTAGMI-MGRSGIRRAYESGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES     
Sbjct: 242 TVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ 
Sbjct: 302 RIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVD-NHPKVLNLKEILYHYLEHQKV 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQ 427
           V+ RR+ F ++  + R  IL+GL IA  NID II +IR           ++++F+L++ Q
Sbjct: 361 VIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++
Sbjct: 421 AQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYA 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                 +RRT     +    +   + +I +E + + ++ RG+I+          +     
Sbjct: 481 D-----KRRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +   E D ++  +   T D +L  +  GK Y      +       +   I  L+ + 
Sbjct: 534 IQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIE 593

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +     L   +  G       S+     + G   +++   +++  V 
Sbjct: 594 SQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQ 653

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G  ++ +  ++ + + F  + I  M R   GVR    ++     +    + +    +
Sbjct: 654 MTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEV-IGMEVLEDDEKVL 712

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        L  RGG+G        ++G  ++
Sbjct: 713 VVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K     L A+  +E D L        +  +++ +  G++   P  N+        A    
Sbjct: 632 KIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTA-AGVRG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           I L  + +++   V +   K+LVV+ KG       S+     R G   KT         +
Sbjct: 691 IRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNL 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  VTG+  + ++  +  L+ F I+ + +  R   GV+L    +      + 
Sbjct: 751 VAMKTVTGEEDLMLMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDEDEKVATVA 804


>gi|229829523|ref|ZP_04455592.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM
           14600]
 gi|229791954|gb|EEP28068.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM
           14600]
          Length = 882

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/776 (30%), Positives = 395/776 (50%), Gaps = 37/776 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG D      T+  + ++ V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RR++++
Sbjct: 4   MGDDIF--DQTVRSDTIQEVDLKSTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYS 61

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+        +K ARIVG+ +GK HPHGD S+Y +LV +AQP+  R  L+ G GNFG+
Sbjct: 62  MIELNNTPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRNILVDGHGNFGS 121

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR+++++  ++  +++D VDF   ++E + EPVV P++ PNLL NGT
Sbjct: 122 IDGDGAAAMRYTEARLSKISMAMMADINKDTVDFIPNFDETEKEPVVLPARLPNLLVNGT 181

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVES 235
           +GIAVGMAT+IP HN++E+  A + +IDN         I ++L  + GPDFPTGGII+  
Sbjct: 182 TGIAVGMATNIPPHNLREVIAACVKIIDNRVEEDRSTDISEILGIVKGPDFPTGGIIL-G 240

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I E+YR GRG  +VRA   +E +  G   I+V+EIPY V K+R+IEKIA+++  KR+
Sbjct: 241 RAGIEEAYRTGRGKIKVRAVADIEPMDNGKHRIIVSEIPYGVNKARMIEKIADMVKDKRL 300

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             +  +RDE++ +   V+    + ++P++++  ++  + ++  + + M  L  G  P++M
Sbjct: 301 DGITALRDETSREGMRVVIELRKDINPNVMLNKLYKQTQLQDSYGVIMLALV-GNQPRIM 359

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-- 413
            L  +L  ++ H+ +V+ RR+ F +     R  IL+GLL A  NIDE+I IIR+      
Sbjct: 360 SLKEVLDHYILHQEDVVTRRTRFDLNKAQERDHILQGLLTALDNIDEVIKIIRSSKSVAI 419

Query: 414 -KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            K  ++ RF+L+E Q  AI+++RLR+L  LE  ++++E   L+ +      +L   K+  
Sbjct: 420 AKEQLMGRFALSEAQAQAIVDMRLRALTGLEREKLEAEHRELMEKIAYFKGILADHKKLL 479

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +  E++E+ + +        RRT        D     + +I      +  +  G+I+ 
Sbjct: 480 TVVKEEMQEIADKYGD-----DRRTQI---GFDDDDISAEDLIPVTHPIITFTKFGYIKR 531

Query: 533 L--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-- 582
           +              +  +   + D +   +   + + +   +  G+ Y L A  +    
Sbjct: 532 MSADNFRAQHRGGKGIKGMETIKDDYIVELIQTRSHNFLYFFTNKGRVYRLKAYEIPEAS 591

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
               G AI  L+ L  ++ I +        D    L + + +G        E     + G
Sbjct: 592 RTARGTAIVNLLQLMPDETITSMIPVVPGEDEDKYLFMATQRGIVKKTRLREYENIRKSG 651

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              + +  E+++  V      D V +     + + F    +    R   GV   +  D  
Sbjct: 652 LAAINLRDEDRLIEVKLTDDTDEVMLFTRFGQCVRFHESDVRGTGRSTMGVIGINLSDQD 711

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +     +G + +  + R   +           RGG G    K   ++G  + 
Sbjct: 712 CVIAMQLA-SQGESLVLVSQRGLGKCTLTEEFPSHHRGGKGVKCYKITEKTGDLVG 766



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 70/219 (31%), Gaps = 8/219 (3%)

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
            T   +        +   +       ++               L+A++ ++ D L     
Sbjct: 609 ETITSMIPVVPGEDEDKYLFMATQRGIVKKTRLREYENIRKSGLAAINLRDEDRLIEVKL 668

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
              TD ++L +  G+       ++         +   I+L+    ++   +      L++
Sbjct: 669 TDDTDEVMLFTRFGQCVRFHESDVRGTGRSTMGVIG-INLSDQDCVIAMQLASQGESLVL 727

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLL 671
           VS +G        E  ++ R GK      +   + + +  V  V  D  + ++     ++
Sbjct: 728 VSQRGLGKCTLTEEFPSHHRGGKGVKCYKITEKTGD-LVGVKSVDKDNQLMLINRAGTII 786

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             +I     + R   GV+L   K       I     E L
Sbjct: 787 RINIADTALLGRITSGVKLIDLKGDDEVASISVVQREDL 825


>gi|190149558|ref|YP_001968083.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307262878|ref|ZP_07544502.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189914689|gb|ACE60941.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871783|gb|EFN03503.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 896

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/820 (30%), Positives = 389/820 (47%), Gaps = 80/820 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  ++++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLEKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I+N +ISIE+L+ +I GPDFPTG  I+  R+ I E+YR GRG  
Sbjct: 182 IPPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGA-IINGRKGIEEAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +   
Sbjct: 241 YVRAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRRE
Sbjct: 301 SIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPKVLNLKQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IRN                     
Sbjct: 360 VVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V   ++ L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKA 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +L+S ++    I  E+ +VK  F           +         A     
Sbjct: 480 LLTEIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+   +  M R
Sbjct: 660 KVSLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMGR 719

Query: 684 -GKGVRLQSYK-----------------------------DGGISDVICFKICEGLTWID 713
              GVR                                  D      +     EG   + 
Sbjct: 720 TATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSLVIPRTEGD-ILT 778

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +        +  R   G +  K   R+GK +++
Sbjct: 779 VTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLV 653
               +V+  +  +   +L V+  G        E    +R  K  + +   E+    +  V
Sbjct: 760 DTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAV 819

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
                D + ++ +   L+   + ++  + R  +GVR+    D      +
Sbjct: 820 QVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSV 868


>gi|163790924|ref|ZP_02185347.1| DNA gyrase, A subunit [Carnobacterium sp. AT7]
 gi|159873766|gb|EDP67847.1| DNA gyrase, A subunit [Carnobacterium sp. AT7]
          Length = 861

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/754 (31%), Positives = 384/754 (50%), Gaps = 15/754 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              +EN+K V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+    
Sbjct: 3   EEFKENIKNVELSHEMRSSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ +  RYPL+ G GNFG++DGD AAA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDWSYRYPLVDGHGNFGSVDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L+ +++D +D+ D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+  A   L++NP+ +   L+E I GPDFPTGG +V  +  I ++Y  G+G  
Sbjct: 183 IPPHNLTEVISALHILMNNPDATTADLMEAIPGPDFPTGG-LVMGKSGIRKAYETGKGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +E    G   I+V E+PY V K+RL+E+IA+L   KRI  + D+ DES  D  
Sbjct: 242 MVRAKVEIEIQKNGKERILVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R +   +++ +++ L+ M+T F  NM  +    VP+V+ L  IL+E+L H+  
Sbjct: 302 RIVIDVRRDVSASVVLNNLYKLTSMQTSFGFNMLAIV-NGVPKVLSLKSILEEYLKHQEV 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQ 427
           V+ RR+++  +  + R  IL+GL IA  +I+EII IIR+          ++  + L+E Q
Sbjct: 361 VIRRRTAYDKRKAEARAHILEGLRIALDHIEEIIRIIRSSKTGDVAKTTLIETYGLSEKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++R+  L  LE  +I+SE   L+A  E +  +L   ++    I  E+ EV+E F 
Sbjct: 421 AQAILDMRMVRLTGLERDKIESEYTELIALIEDMADILAKPERIHKIIETELLEVQEKFG 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            +            +   D    +  +I       +        +S +     +  +   
Sbjct: 481 DARRTELLVGEVLSLEDEDLIEEEDIVITLTSKGYIKRLPSSEFKSQRRGGRGIQGMGVH 540

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           + D ++  +   T D +L  + +GK Y      +       +   +  L+ ++  + +  
Sbjct: 541 DDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPEYGRTAKGIPVINLLGIDSGETVQA 600

Query: 605 AFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                   +    L   +  G     +          G   + +   +++  V    GD 
Sbjct: 601 VINVRGEAEDGLYLFFTTRLGTVKRTDVKAFSNIRSNGLKAIVLKENDELMSVSVTNGDE 660

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +       + F    +  M R   GVR    ++     +    + E    +    + 
Sbjct: 661 NIIIGTHMGYAVSFHEKDVRNMGRTAGGVRGIRLRENDYV-IGVDLLKEDSEVLIITEKG 719

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +        +  RGG G        ++G    
Sbjct: 720 YGKRTKASEYAIKGRGGKGIKTANITSKNGNLAG 753



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L      +  + I++ +  G A +    ++ +
Sbjct: 622 TVKRTDVKAFSNIRSNGLKAIVLKENDELMSVSVTNGDENIIIGTHMGYAVSFHEKDVRN 681

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                      I L  N  ++   +     ++L+++ KG     + SE     R GK   
Sbjct: 682 MGRTA-GGVRGIRLRENDYVIGVDLLKEDSEVLIITEKGYGKRTKASEYAIKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++     ++ F++  + +  R   GVR+    +   
Sbjct: 741 TANITSKNGNLAGLTTVKGDEDIMLITNTGVIIRFNVSAVSQTGRATLGVRVIRVAEEVK 800

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 801 VSTMAKVDAE 810


>gi|289433380|ref|YP_003463252.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289169624|emb|CBH26158.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 841

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/760 (31%), Positives = 408/760 (53%), Gaps = 28/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+H++ E+ +  LAL ++P+ISI +L+EYI GPDFPT G+I   R  I  +Y  GRG  
Sbjct: 183 IPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMI-MGRSGIRRAYESGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES     
Sbjct: 242 TVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ 
Sbjct: 302 RIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVD-NHPKVLNLKEILYYYLEHQKV 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQ 427
           V+ RR+ F ++  + R  IL+GL IA  NID II +IR           ++++F+L++ Q
Sbjct: 361 VIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++
Sbjct: 421 AQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYA 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                 +RRT     +    +   + +I +E + + ++ RG+I+          +     
Sbjct: 481 D-----KRRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +   E D ++  +   T D +L  +  GK Y      +       +   I  L+ + 
Sbjct: 534 IQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIE 593

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +     L   +  G       S+     + G   +++   +++  V 
Sbjct: 594 SQEQVNAVINLSEFTDDNYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQ 653

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G+ ++ +  ++ + + F    I  M R   GVR    ++G    +    + +    +
Sbjct: 654 MTDGNKNMIIATKHGQSIYFPEANIRVMGRTAAGVRGIRLREGDEV-IGMEVLEDDEKVL 712

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        L  RGG+G        ++G  ++
Sbjct: 713 VVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752



 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
            E      A +  +    +      +  G ++        K     L A+  +E D L  
Sbjct: 592 IESQEQVNAVINLSEFTDDNYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    +++ +  G++   P  N+        A    I L    +++   V +   K
Sbjct: 652 VQMTDGNKNMIIATKHGQSIYFPEANIRVMGRTA-AGVRGIRLREGDEVIGMEVLEDDEK 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +LVV+ KG       S+     R G   KT         +  +  VTG+  + ++  +  
Sbjct: 711 VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 770

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           L+ F ID + +  R   GV+L    +      + 
Sbjct: 771 LIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 804



 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 60/179 (33%), Gaps = 6/179 (3%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVISNRGWIRSLKSHSVD 539
             F+K    G R     E        +       +I  +    +      IR +   +  
Sbjct: 628 SQFAKIRQSGLRAVELRENDELISVQMTDGNKNMIIATKHGQSIYFPEANIRVMGRTAAG 687

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           +  +  +EGD +         +++L+++  G     PA         G  ++ +     N
Sbjct: 688 VRGIRLREGDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN 747

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
            ++V          L++++  G     E   +    R   G   +++  +EK+  V KV
Sbjct: 748 GNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806


>gi|332978327|gb|EGK15053.1| DNA gyrase, A subunit [Psychrobacter sp. 1501(2011)]
          Length = 917

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/816 (30%), Positives = 400/816 (49%), Gaps = 85/816 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  +++   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM ++  D+   +
Sbjct: 1   MSDSVSPIAIIDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYP++ GQGNFG+ID D AAA RYT
Sbjct: 61  KKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++   +L  +D+D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EVRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  DNP IS E+L  YI GPDFPTGG I+  R  IV++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYADNPNISSEELTNYISGPDFPTGG-IIYGRAGIVDAYRTGKGRVHI 239

Query: 253 RARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E +      R    IV TEIPYQ  K++LIE+IAEL+  K+I  + +IRDES +
Sbjct: 240 RGRYHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   +     R    ++++ ++F+ + +E+ F +NM  L     P++M L  ++  ++ H
Sbjct: 300 DGMRIAIDLRRGEVAEVIVNNLFLQTPLESSFSINMVALD-NGQPKLMTLRQLIAAFVRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
           R+EV+ RR+ F +     R  +L+GL +A  NID+IIA I+                   
Sbjct: 359 RQEVVTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKESANRGEAREKLLGQIWDS 418

Query: 416 ----------------------------------------VMVSRFSLTENQVDAILNLR 435
                                                      + + L+  QV+AIL ++
Sbjct: 419 GTVVAMLQAAGRGTLEAGDLRSVRPEYIEGEDFKNPFGLIDNGNNYRLSVEQVNAILEMQ 478

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  ++  E  +LL +  +++S+L    +    I  E+ E+ E F        R
Sbjct: 479 LHRLTGLEHDKLTEEYQDLLRQIAELESILADFDKLMLVIKNEMLEILENFGDE-----R 533

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKE 547
           RT   +   +     ++ +I ++ + + +S  G+          + K      SA   KE
Sbjct: 534 RTDIVD---SRTDFSREDLIPEQSVVLTVSRTGYAKTQPISDYVAQKRGGKGKSATAMKE 590

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTA 605
            D +   +   T   +L  + +G+ ++L    +   S    G  +  +I L+ ++ + T 
Sbjct: 591 DDVIDHLVVTSTHATVLCFTDNGRVFSLRGFEVPIASRGARGRPLVNIIGLDADEIVTTI 650

Query: 606 FVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                      +  +   ++ G    VE S+       G   + +   +K+       G+
Sbjct: 651 LPIPDLSEEIDSRFVFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSARITNGE 710

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             V +   + K + F  +    M R  KGVR            +     +    + +   
Sbjct: 711 QEVMLFASSGKAIRFDENDARVMGRTAKGVRGMRIAKDESIKSLVVIEDDVKEILIACEN 770

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RGG G +  K   R+G  + +
Sbjct: 771 GYGKRTPVDEFNAQNRGGGGVIAIKTSERNGALVRA 806



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 7/183 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  L A+  +EGD L  A   +    ++L ++ GKA      +        + ++ +
Sbjct: 684 NIRSNGLIAIGLEEGDKLVSARITNGEQEVMLFASSGKAIRFDENDARVMGRTAKGVRGM 743

Query: 594 IDLNHNQDIVTAFVYDST-CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEE 648
             +  ++ I +  V +    ++L+    G        E  A  R G   + +     +  
Sbjct: 744 R-IAKDESIKSLVVIEDDVKEILIACENGYGKRTPVDEFNAQNRGGGGVIAIKTSERNGA 802

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            ++       D + ++     L+   + Q+    R  +GV L           +      
Sbjct: 803 LVRATKVQPEDDIILISNKGTLVRTPVAQVATSGRNTQGVTLIRLGADEALVAMARVEDS 862

Query: 708 GLT 710
           G  
Sbjct: 863 GEE 865


>gi|210634745|ref|ZP_03298273.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279]
 gi|210158685|gb|EEA89656.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279]
          Length = 929

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/757 (32%), Positives = 381/757 (50%), Gaps = 14/757 (1%)

Query: 7   SNSNTLVEENVKAVS-LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            ++ T +      +S     +++ ++ Y++S I  RA+PD+RDG KPVHRRI++AM+E G
Sbjct: 61  EDAGTDINGGSLQISEFGKEMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESG 120

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSA  VGEVIGK HPHGD +VYD++VRLAQ F  R PLI G GNFGNIDGD 
Sbjct: 121 IFPNRPHKKSAWTVGEVIGKYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDG 180

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+R+ + A  +L+ + +D VD++  Y+E  +EP   P++FPNLL NG+ GIAV
Sbjct: 181 AAAMRYTESRLAKPAMELLRDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAV 240

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+I  HN+ E  EA   LID+P+ ++++L++ + GPDFPTG  ++   E I +SY  
Sbjct: 241 GMATNIAPHNMNEAIEATCYLIDHPDATVDELMQIMPGPDFPTGA-LIMGTEGIRQSYET 299

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  VE    G   +V TEIPY V K  L EKIA L+  KRI  + D+RDES
Sbjct: 300 GRGSITVRAKAHVESTKTGRSRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDES 359

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    ++    + + P +++ +++  + ++T F  N   L    VP+ + L  +L+ ++
Sbjct: 360 TQKGLRLVIELKKGVIPQVVLNNLYKYTSLQTTFGANNLALV-NGVPKCLSLREMLQHYI 418

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H+ +V+ RR+ F ++    R  IL+G LIA  +IDE+I+IIR+          ++ RF 
Sbjct: 419 DHQVDVVTRRTRFDLKKAQARAHILEGYLIALDHIDEVISIIRSSQTDAEASSRLIERFG 478

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +  Q  AIL ++LR L  LE  +I+ ELD L       + LL   ++    I  E+RE+
Sbjct: 479 FSPEQTTAILEMKLRRLTGLERDKIEEELDGLRRAIAYYEDLLAHEEKILGVIKEEMREI 538

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              F                     A     +       V        R+ K     +S 
Sbjct: 539 ARKFGDKRRTQITHVEKDLDVEDLIADEDMVVTITHTGYVKRIPVAAYRAQKRGGKGVSG 598

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
           ++ KE D +     A T + +L  S+ GK Y L    L     +  G AI  L+     +
Sbjct: 599 VNLKEDDVIDEMFIASTHEYVLFFSSKGKVYRLKVHELPEGTRQARGTAIVNLLPFEDGE 658

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I +      +     L+  ++ G       +    + R G   + + + +++  V +V 
Sbjct: 659 KIASVISCRAFPEDEYLMFATASGMVKKTAMAAYDRSRRDGLIAINIKAGDRLLGVRRVK 718

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            GD + +     K ++F  DQ+    R   GVR  + K G     +      G  ++   
Sbjct: 719 PGDKIIMATTAGKAIMFCEDQVRATGRDTSGVRGITMKGGTEVLGMEITNGSGELFV-VT 777

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +           RGG G    +   R G   +
Sbjct: 778 EHGYGKRTPVAEYPEQNRGGQGVYTIQMTERKGALAA 814



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/349 (11%), Positives = 113/349 (32%), Gaps = 21/349 (6%)

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            + +       +   + +          +   + +++   +   +  I     + +    
Sbjct: 534 EMREIARKFGDKRRTQITHVEKDLDVEDLIADEDMVVTITHTGYVKRIPVAAYRAQKRGG 593

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
              S    + D +++     +    EY +       +   +  +    + + +   I   
Sbjct: 594 KGVSGVNLKEDDVIDEMF--IASTHEYVLFFSSKGKVYRLKVHELPEGTRQARGTAIVNL 651

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +           + G +  +        +   +  M       V  +        +    
Sbjct: 652 L---------PFEDGEKIASVISCRAFPED--EYLMFATASGMVKKTAMAAYDRSRRD-- 698

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A++ K GD L         D+I++ +T GKA      + +   G   +    I +  
Sbjct: 699 GLIAINIKAGDRLLGVRRVKPGDKIIMATTAGKAIMF-CEDQVRATGRDTSGVRGITMKG 757

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKV 656
             +++   + + + +L VV+  G       +E     R G+    ++++  +     +KV
Sbjct: 758 GTEVLGMEITNGSGELFVVTEHGYGKRTPVAEYPEQNRGGQGVYTIQMTERKGALAAMKV 817

Query: 657 TG--DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
            G    + ++ EN  ++     +I +  R  +GV++ S  +G     + 
Sbjct: 818 VGPQHELFIITENATVIRVKTAEISQTGRATQGVKMMSVDEGDRVCAVA 866



 Score = 42.8 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 41/125 (32%), Gaps = 2/125 (1%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
             +  +  +  K G  +      + +  + +++  G     P          G+ +  + 
Sbjct: 745 RDTSGVRGITMKGGTEVLGMEITNGSGELFVVTEHGYGKRTPVAEYPEQNRGGQGVYTIQ 804

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
                  +    V     +L +++       V+ +EI    R   G   + V   +++  
Sbjct: 805 MTERKGALAAMKVVGPQHELFIITENATVIRVKTAEISQTGRATQGVKMMSVDEGDRVCA 864

Query: 653 VVKVT 657
           V ++T
Sbjct: 865 VARMT 869


>gi|258513373|ref|YP_003189595.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771]
 gi|257777078|gb|ACV60972.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 811

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/759 (33%), Positives = 405/759 (53%), Gaps = 29/759 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    V  ++L+  ++  Y+ YA+S I  RA+PD+RDG KPVHRRII+AM  +G+    A
Sbjct: 1   MSAGKVVPINLKDEMKNSYMDYAMSVIVGRALPDVRDGLKPVHRRIIYAMHGLGMTPDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KK A IVGEV+ K HPHGD +VYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKCAHIVGEVLAKYHPHGDVAVYDALVRMAQSFSIRYTLVDGHGNFGSVDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT++A  +L  ++++ VDF   Y+E   EP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 121 TEARMTKIATEMLTDIEKETVDFIPNYDESIEEPTVLPARVPNLLINGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + L+DNPE     L++ + GPDFPT G I    + I+ +Y  GRG  +
Sbjct: 181 PPHNLAEVIDGVIMLVDNPEADSRTLMKAVKGPDFPTAGKI-MGVQGIISAYTTGRGSIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE+  G   IVV EIPYQV K+RLIEKIAEL+  K+I  + D+RDES      
Sbjct: 240 IRAQAEIEEMSGGKNRIVVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDRKGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R + P L++  ++  + M+  F + M  L     P V+ L  +L  +L H++++
Sbjct: 300 IVIELKRDVYPQLVLNQLYKHTKMQDSFGVIMLALVD-GRPNVLNLRDMLYYYLEHQKDI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR++F ++  + R  I++GL IA  N+DE+I  IR+       K  +V +F LTE Q 
Sbjct: 359 IIRRTTFDLKKAEARAHIVEGLRIALANLDEVINTIRSSQTVEIAKQGLVEKFLLTEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL +RL+ L  LE  +++ E  +L+ +   ++++L+   +    I  E+ E+++ ++ 
Sbjct: 419 QAILEMRLQRLTGLEIEKLEQEYRDLMEKIAYLEAILSDEGKILAIIKDELLEIRKKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT   +   A      + +I +E + + I+  G+I+          K     +
Sbjct: 479 -----KRRTVISDEDTA---FDVEDLIAEEDMVITITRNGYIKRLPLDTYRSQKRGGRGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
           SA+  KE D LK      T   IL  +  GK Y L    +       +  AI  L+ +  
Sbjct: 531 SAMGVKEKDFLKHLFITSTHHYILFFTNKGKVYRLKVHEIPEAGRQSKGTAIINLLFVGT 590

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + + T      ++    L + +  G       +E   + R G   L +   + +  V  
Sbjct: 591 EEKVTTVIPVKEFNKDEFLFMCTKNGIVKKTSLNEFDTSRRDGIIALTLDDHDDLVDVRL 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G + + +  +    + FS D + ++ R  KGVR     +G     +     EG   + 
Sbjct: 651 TNGQEEIIIGTQKGLAIRFSEDDVRKLGRIAKGVRGIGLIEGDFVVGMDTVRNEGD-LLV 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                + +        L  RGG G +  K   R+G  +S
Sbjct: 710 VTKNGFGKKTPISEYRLQTRGGKGIINVKISDRNGPVVS 748



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---- 649
           I L     +V      +   LLVV+  G       SE    TR GK  + V   ++    
Sbjct: 687 IGLIEGDFVVGMDTVRNEGDLLVVTKNGFGKKTPISEYRLQTRGGKGIINVKISDRNGPV 746

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE 707
           + L+V    + + ++     ++   +++I    R  +GV L     G     I     E
Sbjct: 747 VSLLVVKPDEEIMMLSSEGIIIRMKVNEISTTGRATQGVTLMKLSSGDSVATIAKVNAE 805


>gi|165932663|ref|YP_001649452.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. Iowa]
 gi|165907750|gb|ABY72046.1| topoisomerase IV subunit A [Rickettsia rickettsii str. Iowa]
          Length = 738

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/739 (50%), Positives = 527/739 (71%), Gaps = 4/739 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LI+ P+  I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  R
Sbjct: 181 PPHNLHELCDALIHLINYPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +++ RF LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIITIIREEDEPKAIIMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVTFTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           KRG  G L P GFP++ +F
Sbjct: 717 KRGSTGKLPPMGFPKNNRF 735


>gi|319954436|ref|YP_004165703.1| DNA gyrase subunit a [Cellulophaga algicola DSM 14237]
 gi|319423096|gb|ADV50205.1| DNA gyrase subunit A [Cellulophaga algicola DSM 14237]
          Length = 844

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/754 (30%), Positives = 392/754 (51%), Gaps = 19/754 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+   +A KK
Sbjct: 5   EKLIPINIDDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVRSTSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A+ +L  +D+D VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKIADDMLADIDKDTVDHQLNFDDTLKEPKVLPTRIPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A I+N +I I++L+ +I  PDFPTGG I+   + + E++  GRG   +RA
Sbjct: 185 NLSEVVDGTIAYIENNDIEIDELITHIKAPDFPTGG-IIYGYDGVKEAFHTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G  CI+VTEIPYQV K+ +I+K A+L+  K+I  +  IRDES  +   +++
Sbjct: 244 KASFEEV-QGRECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L     PQ++ +  ++  ++ HR EV+ R
Sbjct: 303 IIKRDAIPNIVLNTLYKYTALQSSFSVNNIALV-NGRPQMLNVKEMIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IAIIR           ++ RF L+E Q  AI
Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADEARTNLMERFKLSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D +LA    +  +L   +++   I  E+ EVK  +     
Sbjct: 422 VEMRLRQLTGLEQDKLRTEYDEILAFIIDLKDILARKERRMEIIKEELAEVKAKYGDERR 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                              Q  +       +  +     ++     V   A   +  D L
Sbjct: 482 SEINFAGGDLSMEDMIPDEQVVITISHAGYIKRTALSEYKTQNRGGVGQKASSTRNEDFL 541

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD 609
           +          +L  +  GK + +    +  G    +  AIQ LI +  +  +       
Sbjct: 542 EHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSKSSKGRAIQNLISIESDDKVKAFICTQ 601

Query: 610 S--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                    +  +++ + KG        +     + G   + +  ++++      TG   
Sbjct: 602 DLKDEEYVNSHYVIMATKKGIVKKTSLEQYSRPRQNGINAIGIREDDELLEAKLTTGTSE 661

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRS 718
           + +  ++ K + F   +   M R   GVR  +  +     +    +       +  + + 
Sbjct: 662 IFLGLKSGKAIRFEESKTRPMGRNASGVRGITLANDDDEVIGMVSVQNLEEEILVVSEKG 721

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +     +  RGG G        ++G  ++
Sbjct: 722 YGKRSSIEDYRVTNRGGKGVKTISITDKTGGLVA 755



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 103/327 (31%), Gaps = 16/327 (4%)

Query: 391 KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
           + ++I   +   I     +E K +         +  + +  L           +Y +   
Sbjct: 500 EQVVITISHAGYIKRTALSEYKTQNRGGVGQKASSTRNEDFLEHLFVG--TNHQYMLFFT 557

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
                      +    S   +   I   +  ++        +  +     E   +    +
Sbjct: 558 QKGKCFWMRVYEIPEGSKSSKGRAIQN-LISIESDDKVKAFICTQDLKDEEYVNSHYVIM 616

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                  +   V  ++       + +   ++A+  +E D L  A     T  I L    G
Sbjct: 617 -----ATKKGIVKKTSLEQYSRPRQN--GINAIGIREDDELLEAKLTTGTSEIFLGLKSG 669

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEES 629
           KA             +   ++ +   N + +++      +   ++LVVS KG        
Sbjct: 670 KAIRFEESKTRPMGRNASGVRGITLANDDDEVIGMVSVQNLEEEILVVSEKGYGKRSSIE 729

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG- 684
           +     R GK    +S  +K   +  +  V+  D + ++ ++   +  S++ +  M R  
Sbjct: 730 DYRVTNRGGKGVKTISITDKTGGLVAIKNVSDSDDLMIINKSGIAIRMSVEDLRVMGRAT 789

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTW 711
           +GVRL + K       +   + +    
Sbjct: 790 QGVRLINIKGKDSIAAVAKVMKDEDAV 816


>gi|16802055|ref|NP_463540.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e]
 gi|47097289|ref|ZP_00234847.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|224498300|ref|ZP_03666649.1| DNA gyrase subunit A [Listeria monocytogenes Finland 1988]
 gi|224503070|ref|ZP_03671377.1| DNA gyrase subunit A [Listeria monocytogenes FSL R2-561]
 gi|254827431|ref|ZP_05232118.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165]
 gi|254830701|ref|ZP_05235356.1| DNA gyrase subunit A [Listeria monocytogenes 10403S]
 gi|254899679|ref|ZP_05259603.1| DNA gyrase subunit A [Listeria monocytogenes J0161]
 gi|254913118|ref|ZP_05263130.1| DNA gyrase [Listeria monocytogenes J2818]
 gi|254937499|ref|ZP_05269196.1| DNA gyrase subunit A [Listeria monocytogenes F6900]
 gi|255025421|ref|ZP_05297407.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-003]
 gi|284803259|ref|YP_003415124.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578]
 gi|284996400|ref|YP_003418168.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923]
 gi|16409366|emb|CAC98222.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e]
 gi|21328236|gb|AAM48483.1| DNA gyrase subunit A [Listeria monocytogenes]
 gi|47014334|gb|EAL05309.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|258599809|gb|EEW13134.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165]
 gi|258610101|gb|EEW22709.1| DNA gyrase subunit A [Listeria monocytogenes F6900]
 gi|284058821|gb|ADB69762.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578]
 gi|284061867|gb|ADB72806.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923]
 gi|293591120|gb|EFF99454.1| DNA gyrase [Listeria monocytogenes J2818]
          Length = 842

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 405/760 (53%), Gaps = 28/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+H++ E+ +  LAL  +PEI+I  L+EYI GPDFPT G+I   R  I  +Y  GRG  
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMI-MGRSGIRRAYESGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES     
Sbjct: 242 TVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ 
Sbjct: 302 RIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVD-NHPKVLNLKEILYYYLEHQKV 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQ 427
           V+ RR+ F ++  + R  IL+GL IA  NID II +IR           ++++F+L++ Q
Sbjct: 361 VIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++
Sbjct: 421 AQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYA 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                 +RRT     +    +   + +I +E + + ++ RG+I+          +     
Sbjct: 481 D-----KRRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +   E D ++  +   T D +L  +  GK Y      +       +   I  L+ + 
Sbjct: 534 IQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIE 593

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +     L   +  G       S+     + G   +++   +++  V 
Sbjct: 594 SQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQ 653

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G  ++ +  ++ + + F  + I  M R   GVR    ++     +    + +    +
Sbjct: 654 MTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEV-IGMEVLEDDEKVL 712

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        L  RGG+G        ++G  ++
Sbjct: 713 VVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K     L A+  +E D L        +  +++ +  G++   P  N+        A    
Sbjct: 632 KIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTA-AGVRG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           I L  + +++   V +   K+LVV+ KG       S+     R G   KT         +
Sbjct: 691 IRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNL 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  VTG+  + ++  +  L+ F ID + +  R   GV+L    +      + 
Sbjct: 751 VAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 804


>gi|302336535|ref|YP_003801742.1| DNA gyrase subunit A [Olsenella uli DSM 7084]
 gi|301320375|gb|ADK68862.1| DNA gyrase subunit A [Olsenella uli DSM 7084]
          Length = 929

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/764 (32%), Positives = 386/764 (50%), Gaps = 15/764 (1%)

Query: 1   MGVDN--ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           MG DN  + +   +    ++       +E+ ++ Y++S I  RA+PD+RDG KPVHRRI+
Sbjct: 65  MGSDNRGMGDDVDIHGGRLQLHEFGHEMEQSFIEYSMSVITARALPDVRDGLKPVHRRIL 124

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+E G+      KKSA  VGEVIGK HPHGD +VYD++VRLAQ F  R PL+ G GNF
Sbjct: 125 YAMNEAGIFPNKPHKKSAWTVGEVIGKYHPHGDSAVYDAMVRLAQWFSMRTPLVDGHGNF 184

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           GNIDGDSAAA RYTE+R+ + A  +L+ +++D +D++  Y+E   EPVV P++FPNLL N
Sbjct: 185 GNIDGDSAAAMRYTESRLARPAMELLRDLNKDTIDWQSNYDESLQEPVVLPARFPNLLVN 244

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+ GIAVGMAT+IP HN++E   A   LIDNP+ +++ L+  + GPDFPTG  ++   E 
Sbjct: 245 GSQGIAVGMATNIPPHNLKETIAAVCMLIDNPDATVDDLMTVMPGPDFPTGA-VIMGSEG 303

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y  GRG   +RA+  VE    G   +V TE PY V K  L EKIA+L+  KR+  +
Sbjct: 304 IRQAYETGRGIITIRAKAHVESTKTGRNKLVFTEFPYGVNKGTLQEKIAQLVNEKRVEGI 363

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES      ++    +   P++++ +++  S +++ F +    L    VP+ + L 
Sbjct: 364 SDMRDESNRKGLRLVIELKQGAIPEVVLNNLYKYSALQSSFGIIDLALV-NGVPRTLTLR 422

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---P 415
            +L+ ++ H+ +V+ RR+ F +     R  IL+GLL+A  +IDE+I+IIR+         
Sbjct: 423 EMLQHYIDHQVDVVTRRTRFDLAKARARAHILEGLLLALDHIDEVISIIRSSRTDTQASE 482

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++ RF  T+ Q  AIL +RLR L  LE  +I+ ELD L    E  + LL   ++    I
Sbjct: 483 RLIERFGFTKQQTTAILEMRLRRLTGLERDKIQEELDGLRRAIEYYEDLLADSRKILEVI 542

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E+ E+ E +                     A     +       V        RS K 
Sbjct: 543 KSEMSEIGEKYGDKRRTTISDAPVVLDVEDLIAEEDMVVTVTHAGYVKRLPVATYRSQKR 602

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLL 593
               +  L  K+ D ++    A T D ++  +  GK Y +    L  G  H    A+  +
Sbjct: 603 GGKGVQGLSLKDNDFVEDLFVASTHDYVMFFTNRGKVYRVKVHELPIGSRHARGSALVNV 662

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + L   +          + +   L+  ++ G       S+   + R G   + +  ++++
Sbjct: 663 LPLGEGEHPTAVITTREFPADEYLMFATANGMVKKTAMSDYDKSRRDGIIAINLKRDDEL 722

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V +V  G  V +  E  K ++F   ++    R   GVR  + KD      +      G
Sbjct: 723 VNVRRVKPGQKVILCSEVGKAILFDESEVRPTGRDTSGVRGITLKDDVKMLGMEITNGNG 782

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    R Y +          KRGG G        + G  ++
Sbjct: 783 D-LLVMTERGYGKRTPVFEYPEHKRGGQGVATIAMTSKKGNLVA 825



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 60/183 (32%), Gaps = 8/183 (4%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                   KS    + A++ K  D L          +++L S  GKA       +    G
Sbjct: 697 KTAMSDYDKSRRDGIIAINLKRDDELVNVRRVKPGQKVILCSEVGKAILFDESEVRP-TG 755

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG----KTF 641
              +    I L  +  ++   + +    LLV++ +G        E   + R G       
Sbjct: 756 RDTSGVRGITLKDDVKMLGMEITNGNGDLLVMTERGYGKRTPVFEYPEHKRGGQGVATIA 815

Query: 642 LKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD 699
           +       +     V   H + +V E   ++      I ++ R  +GV++ +  +     
Sbjct: 816 MTSKKGN-LVACRVVGPQHELMIVSEEGVVIRVKTADISKLGRATQGVKIMNMGENDKVS 874

Query: 700 VIC 702
            + 
Sbjct: 875 AVA 877



 Score = 42.5 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 46/123 (37%), Gaps = 2/123 (1%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
             +  +  +  K+   +      +    +L+++  G     P       +  G+ +  + 
Sbjct: 756 RDTSGVRGITLKDDVKMLGMEITNGNGDLLVMTERGYGKRTPVFEYPEHKRGGQGVATIA 815

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
             +   ++V   V     +L++VS +G    V+ ++I    R   G   + +   +K+  
Sbjct: 816 MTSKKGNLVACRVVGPQHELMIVSEEGVVIRVKTADISKLGRATQGVKIMNMGENDKVSA 875

Query: 653 VVK 655
           V +
Sbjct: 876 VAR 878


>gi|157827971|ref|YP_001494213.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157800452|gb|ABV75705.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 738

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/739 (50%), Positives = 526/739 (71%), Gaps = 4/739 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LI+ P+  I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  R
Sbjct: 181 PPHNLHELCDALIHLINYPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +++ RF LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIITIIREEDEPKAIIMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV   ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVMFTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           KRG  G L P GFP++ +F
Sbjct: 717 KRGSTGKLPPMGFPKNNRF 735


>gi|220919580|ref|YP_002494884.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957434|gb|ACL67818.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 907

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/786 (31%), Positives = 397/786 (50%), Gaps = 61/786 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++   + + YL Y++S I  RA+PD+RDG KPVHRR+++AM   GL     + K A +
Sbjct: 28  QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 87

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+ K HPHGD SVYD+LVRLAQ +  RYPLI GQGNFG++DGD AAAYRYTE R+ +
Sbjct: 88  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 147

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +++ +L  +D++ VD+   ++E   EP V P++FPNLL NG++GIAVGMAT+IP HN+ E
Sbjct: 148 LSDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 207

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +AA+ LI+NP+ ++  L+ +I GPDFPT G  +  R+ I  +Y  GRG  +VRAR  V
Sbjct: 208 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAG-FIHGRDGIRAAYEKGRGTIQVRARTVV 266

Query: 259 E-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E         IVVTEIPYQV K++L+E IAEL+  KRI  + D+RDES+ +   ++    
Sbjct: 267 EIHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELK 326

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R     +++ +++  + M+  F + + +   G  P+++ L  +L+ ++AHRR+V+ RR+ 
Sbjct: 327 RDAMAQVVLNNLYAHTQMQMGFGV-IMLAIDGGQPRILTLKEMLERFVAHRRDVVTRRTR 385

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNL 434
           + ++    R  IL G  IA  +IDEII +I+        +  M++RF+L+E Q  AIL +
Sbjct: 386 YELRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMARFALSELQAKAILEM 445

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L+ L  LE  +I  EL  +     ++  +L S K   + I  E++EVK++F+       
Sbjct: 446 QLQRLTGLERQKILDELAEVQKLITRLKEILASEKVLMDVIVGELKEVKQLFADE----- 500

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT   E+         + +I +E + V +S+ G+++          K      +    +
Sbjct: 501 RRT---EIQGEASDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATR 557

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           + D L+    A T   +L+ S  GK Y L    +        G+ I  L+ L   + +  
Sbjct: 558 DEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGKPIVNLVQLAPGEKVAA 617

Query: 605 AFVY----------DST--------------------CKLLVVSSKGNAFIVEESEIIAN 634
                         D                        + +V+ KG        +    
Sbjct: 618 ILPVRRLPEPPGAADEAAEGEGAEVEKAEEATPPGTPAFVFMVTRKGLIKKTRLEQFARP 677

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
              G   L +   +++          H+ +       + F    +  M R   GV+  + 
Sbjct: 678 RAAGIIALGIEEGDELIAARLTDDRSHILLSTARGMAIRFEESDVRPMGRTAYGVKGITL 737

Query: 693 KDGGISD-----VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           + G             +  +  T +      Y +        +  RGG G +  K   R+
Sbjct: 738 EAGDEVVAGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKTTERN 797

Query: 748 GKFLSS 753
           G  +++
Sbjct: 798 GPVVAA 803



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGEN 667
             +L V++ G     E +E    TR GK  + + + E+   +     V   + V ++   
Sbjct: 759 HTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKTTERNGPVVAAAPVGDAEEVMLITNG 818

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             L+      I  + R  +GVRL + +      V   ++ E
Sbjct: 819 GMLIRMPARGISVIGRNTQGVRLITLESKEEQVVGVARVAE 859


>gi|149276488|ref|ZP_01882632.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Pedobacter sp. BAL39]
 gi|149233008|gb|EDM38383.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Pedobacter sp. BAL39]
          Length = 869

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/770 (30%), Positives = 405/770 (52%), Gaps = 35/770 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +      + +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M ++GL
Sbjct: 3   EDLENQENDKIIKINIDEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMLDLGL 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                +KKSARIVGEV+GK HPHGD SVY+++VR+AQ +  RY ++ GQGNFG+IDGD  
Sbjct: 63  ANNKPYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNFGSIDGDFP 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR  ++AE +L  +++D VDF+  +++   EP V PSK PNLL NG SGIAVG
Sbjct: 123 AAMRYTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGASGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++P HN+ E   A +A ID+ +I I +L++++  PDFPTG  I+     + E++  G
Sbjct: 183 MATNMPPHNITETINATVAYIDDNDIEIAELMKHVKAPDFPTGA-IIYGYTGVQEAFETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +RA+  + E  +    I+VTEIPYQV K+ +IE+ AELI  K+I  + +I+DES 
Sbjct: 242 RGRIVMRAKAEI-ETNKERETIIVTEIPYQVNKAMMIERTAELIGEKKIEGISNIKDESN 300

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   +++   R  +  +++ ++F  + ++T F +N   L     PQ++ L  +++ ++ 
Sbjct: 301 KDGIRIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALV-NGRPQLLNLKDLIRHFVD 359

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSL 423
           HR +V+ RR+ F +    +R  IL+GLLIA  ++DE+I +IR  + P+      + +F L
Sbjct: 360 HRHDVVVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRASETPEEARTGLMEQFGL 419

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q  AIL++ LR L  LE  +IK E + L+   E + S+L+S + +   I  E+ E+K
Sbjct: 420 SDIQARAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQSILDSKELRMQIIKDELNEMK 479

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           E +        RRTT      + +    +  IE E + + IS+ G+I+   +        
Sbjct: 480 EKYGDE-----RRTTIV---HSAEDMSMEDFIEDEDVVITISHEGYIKRTPATEYRTQGR 531

Query: 544 HF--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLL 593
                     +  D ++  L A   + +L  +  G+ + L    +  G    +  AIQ +
Sbjct: 532 GGKGSKGSDSRNEDFIEHLLVASNHNYMLFFTESGRCFWLRVYEIPEGSRLSKGRAIQNI 591

Query: 594 IDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           I++   + I                   +++ + KG                G   + ++
Sbjct: 592 INIPKEEKIKAYIKVKNLKDQEYLENNYIIMCTKKGTIKKTSLEAYSRPRVNGINAININ 651

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             +++      TG   + +   + + + F+ +++  M R   GVR  +        V   
Sbjct: 652 EGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPMGRTATGVRGVTLAHDQDEVVGMI 711

Query: 704 KICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +  +T +  + + Y +  +     +  RGG G        ++G  ++
Sbjct: 712 AVDDPNVTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTISVTEKTGALVA 761



 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/475 (11%), Positives = 143/475 (30%), Gaps = 20/475 (4%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--AK 293
           ++ I             R ++ + E  + +   ++  +   +     + K+        +
Sbjct: 351 KDLIRHFVDHRHDVVVRRTKFELAEAKKRAH--ILEGLLIALDHLDEVIKLIRASETPEE 408

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
               L +    S    R +L    R L      +     +++        ++L    +  
Sbjct: 409 ARTGLMEQFGLSDIQARAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQSILDSKELRM 468

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            +  D + +    +  E                    + ++I   +   I      E + 
Sbjct: 469 QIIKDELNEMKEKYGDERRTTIVHSAEDMSMEDFIEDEDVVITISHEGYIKRTPATEYRT 528

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +         ++++ +  +   L  +     Y +              +    S   +  
Sbjct: 529 QGRGGKGSKGSDSRNEDFIEHLL--VASNHNYMLFFTESGRCFWLRVYEIPEGSRLSKGR 586

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            I   I   KE   K+    +       +               +  T+  ++       
Sbjct: 587 AIQNIINIPKEEKIKAYIKVKNLKDQEYLENNYIIMC------TKKGTIKKTSLEAYSRP 640

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           + +   ++A++  EGD L  A     +  I++    G+A       +         ++ +
Sbjct: 641 RVN--GINAININEGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPMGRTATGVRGV 698

Query: 594 IDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKM 650
              +   ++V     D     +LVVS KG     +  +     R GK    + V+ +   
Sbjct: 699 TLAHDQDEVVGMIAVDDPNVTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTISVTEKTGA 758

Query: 651 KLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
            + +K     D + ++ ++  ++   + ++  M R  +GVRL + K       + 
Sbjct: 759 LVAIKNVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDAIASVA 813


>gi|332885150|gb|EGK05401.1| DNA gyrase, A subunit [Dysgonomonas mossii DSM 22836]
          Length = 866

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/778 (29%), Positives = 401/778 (51%), Gaps = 41/778 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E+ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ MSE+G       
Sbjct: 4   TEDRIIRINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMSELGNTSNKPH 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RY L+ GQGN G++DGDS AA RYT
Sbjct: 64  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWSMRYLLVDGQGNMGSVDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++AE +L+ +D++ VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++ 
Sbjct: 124 EARLSRLAEEMLKDIDKETVDFQLNFDDTLQEPTVLPTRIPNLLVNGASGIAVGMATNMA 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A +A ID+ +I  + L++YI  PDFP+GG  +   + + +++  GRG   +
Sbjct: 184 PHNMTESIDAIVAYIDDRDIDTDGLMQYIKAPDFPSGG-FIYGYQGVRDAFETGRGRVVM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R R  + E       IV+TEIPY V K+ LI+ IA+L+  KR+  + ++ DES      +
Sbjct: 243 RGRAEI-ETEGNHEKIVITEIPYLVNKAELIKHIADLVGEKRLDGISNVNDESDRQGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++  ++ L+ +++ F +N   L     P+ + L  ++  ++ HR +V+
Sbjct: 302 VVDIKRDANANVVLNKLYKLTALQSSFSVNNIALVK-GRPRTLNLKDMISLFVEHRIDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVD 429
            RR+++ ++  + R  IL+GL+IA  NIDE+IA+IR    P+  +   ++RFSLTE Q  
Sbjct: 361 IRRTTYDLRKAEERAHILEGLIIASDNIDEVIALIRASKSPQEAIESLMNRFSLTEIQSR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E D +      ++ +L++   +   I  E+ E+K  +  +
Sbjct: 421 AIVEMRLRQLTGLEQDKLRNEYDEIQKLIAYLNEILSNEDLRMQVIKDELIEIKNKYGDA 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +         A  +  +       +  +     R+     V       ++ D
Sbjct: 481 RRTEIVYASEELNPEDFYANDEMIITVSHFGYIKRTPLTEFRAQNRGGVGAKGSETRDAD 540

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF- 606
            ++    A   + ILL +  GK + L   ++  G  + +  AIQ L+++  +  +     
Sbjct: 541 FIEHIYPASMHNYILLFTQKGKCFWLRVFDIPEGSKNSKGRAIQNLLNIESDDKVTAFIR 600

Query: 607 -------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   Y ++  L+  +  G              + G   + +  ++++  V+   GD
Sbjct: 601 VRGFSDTDYINSHYLVFCTQAGVIKKTRLEAYSRPRQNGVNAITIREDDRVIEVLMTDGD 660

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-----KICEGLTWI 712
             + +   N + + F    + EM R   GVR     + G  +VI       +  +  T +
Sbjct: 661 SEILIANRNGRAIRFHESDVREMGRTATGVRGMRIDEDGQDEVIGMLAMSKEDQKTHTIM 720

Query: 713 DSAGRSYNRSENDLL------------------GWLGKRGGVGSLVPKGFPRSGKFLS 752
             + + Y +  N                       +  RGG G        ++GK +S
Sbjct: 721 VVSEQGYGKRTNLNDKDEEGNDLFDEDGNIIPVYRITSRGGKGVKTLNITDKTGKLVS 778



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 29/142 (20%)

Query: 592 LLIDLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESE----------------- 630
           + ID +   +++              ++VVS +G       ++                 
Sbjct: 693 MRIDEDGQDEVIGMLAMSKEDQKTHTIMVVSEQGYGKRTNLNDKDEEGNDLFDEDGNIIP 752

Query: 631 -IIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG- 684
                +R GK    ++  +K   +  +  VT D  + ++ ++   +   +  I  M R  
Sbjct: 753 VYRITSRGGKGVKTLNITDKTGKLVSINSVTDDNDLMIINKSGITIRLKVSDIRTMGRAT 812

Query: 685 KGVRLQSY--KDGGISDVICFK 704
           +GVRL +   ++  I+ V    
Sbjct: 813 QGVRLINLGKRNDEIASVCKVD 834


>gi|126179354|ref|YP_001047319.1| DNA gyrase, A subunit [Methanoculleus marisnigri JR1]
 gi|125862148|gb|ABN57337.1| DNA gyrase subunit A [Methanoculleus marisnigri JR1]
          Length = 811

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/749 (33%), Positives = 386/749 (51%), Gaps = 15/749 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V  +++   ++  Y+ YA+S I  RAIPD RDG KPVHRR ++AM EMG      +KK
Sbjct: 6   EGVVPINIEEEMKSCYIDYAMSVIIGRAIPDARDGLKPVHRRTLYAMWEMGNTSDKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD ++YD+LV++AQPF  R  L+ GQGNFG+IDGDSAAA RYTEA
Sbjct: 66  SARIVGDVMGKYHPHGDSAIYDTLVKMAQPFSYRCMLVDGQGNFGSIDGDSAAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+++E +L  +D+  VDF   ++E   EP V P++ PNLL NG+SGIAVGMAT++P H
Sbjct: 126 RLTKISEELLTDIDKKTVDFVPNFDESLQEPSVLPARIPNLLVNGSSGIAVGMATNMPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+CEA   +ID+   S E+L++ + GPDFPTGG I+     I ++Y  GRG   VR 
Sbjct: 186 NLREVCEATCRVIDDAGTSTEELMQVMPGPDFPTGG-IMMGTAGIRDAYLTGRGKCVVRG 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +EE GR    I++TEIP+QV K+RLIE IA L+  KRI  + DIRDES  D   ++ 
Sbjct: 245 VAEIEEEGRT-PQIIITEIPFQVNKARLIEHIASLVRDKRIEGIGDIRDESDRDGMRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P +++  ++  + +E+ F +    +   R P+ + L  I+ E+L HR +V+ R
Sbjct: 304 ELKRGAAPQVILNFLYKHTALESSFGIINLAIVD-RQPRTLNLKEIIHEFLKHRVDVVRR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAI 431
           R+ F +   + R+ IL+GLL+A  NID +IA IR             ++F+L E Q DAI
Sbjct: 363 RTEFDLTKNEERMHILRGLLVALDNIDAVIATIRGSGTTDEAQKALVAKFALDEVQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L  LE  +I  E D + AE E++ ++L S      +I  E+ ++   F     
Sbjct: 423 LKMQLRRLAALEHQKILDERDAIAAEIERLSAILASEASILAEIKKELVDIGARFGDERR 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               +                 +       V   +    R+ +     +  +  K+ D +
Sbjct: 483 TRIAQAAEAFDREDLIEDKPVLVSLTSSNYVKRIDLDTYRNQRRGGHGVIGMATKDNDGV 542

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
           +    A+  D +L  +  G+ Y L   +L      G G+A+  L++L+  + + T     
Sbjct: 543 EKVFVANMHDNLLCFTDRGRMYWLKIYDLPEGQRTGKGKALVNLLNLDGEERVTTVIPVR 602

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665
            Y     L   +  G    +   E     + G   + +   + +  V    G+  + +  
Sbjct: 603 EYRPDHHLFFATRNGTVAKMALDEFSRPRQTGINAINLRDGDALVDVKATDGNQELILTT 662

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           +  + L F  + +  + R   GVR    + G     I     E    +    + Y +   
Sbjct: 663 KFGQSLRFHEEAVRPVHRNAMGVRGIKLRHGDALQAIAIV--EDDHLLTITEQGYGKRTE 720

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   RG +G        R+G  + S
Sbjct: 721 FDEYRGHGRGTLGVRNIVVDARAGNVVGS 749



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 65/191 (34%), Gaps = 7/191 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            ++        +     ++A++ ++GD+L           ++L +  G++  L       
Sbjct: 618 TVAKMALDEFSRPRQTGINAINLRDGDALVDVKATDGNQELILTTKFGQS--LRFHEEAV 675

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
              H  A+ +      + D + A        LL ++ +G     E  E   + R      
Sbjct: 676 RPVHRNAMGVRGIKLRHGDALQAIAIVEDDHLLTITEQGYGKRTEFDEYRGHGRGTLGVR 735

Query: 643 KVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
            +  + +   VV        D + V+  +  ++   + +I    RG +GVR+    DG  
Sbjct: 736 NIVVDARAGNVVGSMAVSDDDEIIVMSASGIVIRTKVSEISIQKRGTRGVRVMKLDDGDR 795

Query: 698 SDVICFKICEG 708
                    E 
Sbjct: 796 VIGFTILDSEE 806



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 46/148 (31%), Gaps = 9/148 (6%)

Query: 522 VVISNRGWIRSLKSHSVDLSALHFK-------EGDSLKIALHAHTTDRILLLSTDGKAYT 574
           ++ +  G        +V     +                A+     D +L ++  G    
Sbjct: 659 ILTTKFGQSLRFHEEAVRPVHRNAMGVRGIKLRHGDALQAIAIVEDDHLLTITEQGYGKR 718

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
                          ++ ++      ++V +       +++V+S+ G     + SEI   
Sbjct: 719 TEFDEYRGHGRGTLGVRNIVVDARAGNVVGSMAVSDDDEIIVMSASGIVIRTKVSEISIQ 778

Query: 635 TR--KGKTFLKVSSEEKMKLVVKVTGDH 660
            R  +G   +K+   +++     +  + 
Sbjct: 779 KRGTRGVRVMKLDDGDRVIGFTILDSEE 806


>gi|197124862|ref|YP_002136813.1| DNA gyrase subunit alpha [Anaeromyxobacter sp. K]
 gi|196174711|gb|ACG75684.1| DNA gyrase, A subunit [Anaeromyxobacter sp. K]
          Length = 906

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/786 (31%), Positives = 397/786 (50%), Gaps = 61/786 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++   + + YL Y++S I  RA+PD+RDG KPVHRR+++AM   GL     + K A +
Sbjct: 27  QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 86

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+ K HPHGD SVYD+LVRLAQ +  RYPLI GQGNFG++DGD AAAYRYTE R+ +
Sbjct: 87  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLEK 146

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +++ +L  +D++ VD+   ++E   EP V P++FPNLL NG++GIAVGMAT+IP HN+ E
Sbjct: 147 LSDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +AA+ LI+NP+ ++  L+ +I GPDFPT G  +  R+ I  +Y  GRG  +VRAR  V
Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAG-FIHGRDGIRAAYEKGRGTIQVRARTVV 265

Query: 259 E-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E         IVVTEIPYQV K++L+E IAEL+  KRI  + D+RDES+ +   ++    
Sbjct: 266 EIHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELK 325

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R     +++ +++  + M+  F + + +   G  P+++ L  +L+ ++AHRR+V+ RR+ 
Sbjct: 326 RDAMAQVVLNNLYAHTQMQMGFGV-IMLAIDGGQPRILTLKEMLERFVAHRRDVVTRRTR 384

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNL 434
           + ++    R  IL G  IA  +IDEII +I+        +  M++RF+L+E Q  AIL +
Sbjct: 385 YELRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMARFALSELQAKAILEM 444

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L+ L  LE  +I  EL  +     ++  +L S K   + I  E++EVK++F+       
Sbjct: 445 QLQRLTGLERQKILDELAEVQKLITRLKEILASEKVLMDVIVGELKEVKQLFADE----- 499

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT   E+         + +I +E + V +S+ G+++          K      +    +
Sbjct: 500 RRT---EIQGEASDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATR 556

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           + D L+    A T   +L+ S  GK Y L    +        G+ I  L+ L   + +  
Sbjct: 557 DEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGKPIVNLVQLAPGEKVAA 616

Query: 605 AFVYD------------------------------STCKLLVVSSKGNAFIVEESEIIAN 634
                                              +   + +V+ KG        +    
Sbjct: 617 ILPVRRLPEPPGAADDAAEAEGAEAEKADEATPPGTPAFVFMVTRKGLIKKTRLEQFARP 676

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
              G   L +   +++          H+ +       + F    +  M R   GV+  + 
Sbjct: 677 RAAGIIALGIEEGDELIAARLTDDRSHILLSTARGMAIRFEESDVRPMGRTAYGVKGITL 736

Query: 693 KDGGISD-----VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           + G             +  +  T +      Y +        +  RGG G +  K   R+
Sbjct: 737 EAGDEVVAGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKTTERN 796

Query: 748 GKFLSS 753
           G  +++
Sbjct: 797 GPVVAA 802



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGEN 667
             +L V++ G     E +E    TR GK  + + + E+   +     V   + V ++   
Sbjct: 758 HTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKTTERNGPVVAAAPVGDAEEVMLITNG 817

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             L+      I  + R  +GVRL + +      V   ++ E
Sbjct: 818 GMLIRMPARGISVIGRNTQGVRLITLESKEEQVVGVARVAE 858


>gi|300857426|ref|YP_003782409.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41]
 gi|300684880|gb|ADK27802.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41]
 gi|302205166|gb|ADL09508.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis C231]
 gi|302329725|gb|ADL19919.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis 1002]
 gi|308275408|gb|ADO25307.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis I19]
          Length = 854

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/778 (30%), Positives = 386/778 (49%), Gaps = 40/778 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D +        + +  + L   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++A
Sbjct: 1   MSDDLLGGEG---FDRIHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYA 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G      + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+
Sbjct: 58  MYDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTE R+T +A  +++ + E+ VDF   Y+ +  EP V PS+ PNLL NG+
Sbjct: 118 RGNDGPAAMRYTECRLTPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGS 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESR 236
           +GIAVGMAT+IP HN+ E+ +A   L++NP      ++E  + Y+ GPDFPT G IV   
Sbjct: 178 NGIAVGMATNIPPHNLNELADAIFWLLENPDADEAAALEACMSYVKGPDFPTSGQIV-GS 236

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I ++Y  GRG  R+R    +EE G     IV+TE+PYQV    +I  IAE +   ++ 
Sbjct: 237 QGINDAYTTGRGSIRMRGVTSIEEEGS-RQIIVITELPYQVNPDNMISNIAEQVRDGKLA 295

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            +  I DE S      ++    R   P +++ +++  S ++T F  NM  +    VP+ +
Sbjct: 296 GISKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVD-GVPRTL 354

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            LD +L+ ++ H+ EV+ RR+  R++  ++R  IL+GL+ A   +DE+IA+IR       
Sbjct: 355 RLDQMLRYYVTHQIEVIVRRTQHRLEEAEKRAHILRGLVKALDMLDEVIALIRRSATVDV 414

Query: 416 VMVSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                     + E Q DAIL ++LR L  LE  +I  EL  +  E      +L   ++Q 
Sbjct: 415 ARSGLIDLLTIDEIQADAILAMQLRRLAALERQKIIDELAEIEIEIADYKDILAKPERQR 474

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +  E++E+   +        RRT       A     ++ +I +E + V I++ G+ + 
Sbjct: 475 AIVRDELKEIVTKYGDE-----RRTQII---AATGDVTEEDLIARENVVVTITSTGYAKR 526

Query: 533 LKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-- 582
            K  +          +     K+ D ++      T D IL  +  G+ Y L A  L    
Sbjct: 527 TKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEAS 586

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L++    + I        Y+    L++ +++G       S+  +N   G 
Sbjct: 587 RTARGQHVANLLEFQPEERIAQVIQLQSYEDAPYLVLATAQGRVKKSRLSDYESNRSGGL 646

Query: 640 TFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
             + +  E+K+         D + +V E  + + FS D   +  M R   GV+   ++  
Sbjct: 647 IAINLGEEDKLIGAALCSNDDELLLVSEEGQSIRFSADDDQLRPMGRATAGVKGMRFRGD 706

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +     +    + +    Y +  +        RGG+G +  K  P+ GK +++
Sbjct: 707 DQLLAMTVVRSD-AYLLVATSGGYGKRTSLEEYSQQGRGGLGVVTFKYTPKRGKLIAA 763



 Score = 90.6 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 84/238 (35%), Gaps = 14/238 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADK--ATLQQAMIEKEPITVVISNRGWIRSLKS 535
            ++  +   +  T  G+      E    ++    +Q    E  P  V+ + +G ++  + 
Sbjct: 576 RLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQLQSYEDAPYLVLATAQGRVKKSRL 635

Query: 536 HSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGE 588
                     L A++  E D L  A      D +LL+S +G++    A +      G   
Sbjct: 636 SDYESNRSGGLIAINLGEEDKLIGAALCSNDDELLLVSEEGQSIRFSADDDQLRPMGRAT 695

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS--- 645
           A    +    +  ++   V  S   LLV +S G        E     R G   +      
Sbjct: 696 AGVKGMRFRGDDQLLAMTVVRSDAYLLVATSGGYGKRTSLEEYSQQGRGGLGVVTFKYTP 755

Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
              K+   V V  D  +  +     ++   ++QI   SR   GVRL + +DG     I
Sbjct: 756 KRGKLIAAVVVDEDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGVELLAI 813


>gi|16799086|ref|NP_469354.1| DNA gyrase subunit A [Listeria innocua Clip11262]
 gi|16412428|emb|CAC95240.1| DNA gyrase subunit A [Listeria innocua Clip11262]
          Length = 842

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 405/760 (53%), Gaps = 28/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+H++ E+ +  LAL  +PEISI  L+E+I GPDFPT G+I   R  I  +Y  GRG  
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEHIPGPDFPTAGMI-MGRSGIRRAYESGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES     
Sbjct: 242 TVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ 
Sbjct: 302 RIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVD-NHPKVLNLKEILYHYLEHQKV 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQ 427
           V+ RR+ F ++  + R  IL+GL IA  NID II +IR           ++++F+L++ Q
Sbjct: 361 VIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++
Sbjct: 421 AQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYA 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                 +RRT     +    +   + +I +E + + ++ RG+I+          +     
Sbjct: 481 D-----KRRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +   E D ++  +   T D +L  +  GK Y      +       +   I  L+ + 
Sbjct: 534 IQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIE 593

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +     L   +  G       S+     + G   +++   +++  V 
Sbjct: 594 SQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQ 653

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G  ++ +  ++ + + F  + I  M R   GVR    ++     +    + +    +
Sbjct: 654 MTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEV-IGMEVLEDDEKVL 712

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        L  RGG+G        ++G  ++
Sbjct: 713 VVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K     L A+  +E D L        +  +++ +  G++   P  N+        A    
Sbjct: 632 KIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTA-AGVRG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           I L  + +++   V +   K+LVV+ KG       S+     R G   KT         +
Sbjct: 691 IRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNL 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  VTG+  + ++  +  L+ F ID + +  R   GV+L    +      + 
Sbjct: 751 VAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 804


>gi|46906231|ref|YP_012620.1| DNA gyrase, A subunit [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093017|ref|ZP_00230796.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858]
 gi|226222646|ref|YP_002756753.1| DNA gyrase subunit A [Listeria monocytogenes Clip81459]
 gi|254824773|ref|ZP_05229774.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254851835|ref|ZP_05241183.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254930862|ref|ZP_05264221.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262]
 gi|300763379|ref|ZP_07073377.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017]
 gi|46879495|gb|AAT02797.1| DNA gyrase, A subunit [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018585|gb|EAL09339.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858]
 gi|225875108|emb|CAS03796.1| DNA gyrase subunit A [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605127|gb|EEW17735.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293582407|gb|EFF94439.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262]
 gi|293594012|gb|EFG01773.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300515656|gb|EFK42705.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017]
 gi|328468328|gb|EGF39334.1| DNA gyrase subunit A [Listeria monocytogenes 1816]
 gi|328476149|gb|EGF46855.1| DNA gyrase subunit A [Listeria monocytogenes 220]
 gi|332310340|gb|EGJ23435.1| DNA gyrase subunit A [Listeria monocytogenes str. Scott A]
          Length = 842

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 405/760 (53%), Gaps = 28/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+H++ E+ +  LAL  +P+I+I  L+EYI GPDFPT G+I   R  I  +Y  GRG  
Sbjct: 183 IPTHHLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMI-MGRSGIRRAYESGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES     
Sbjct: 242 TVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ 
Sbjct: 302 RIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVD-NHPKVLNLKEILYHYLEHQKV 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQ 427
           V+ RR+ F ++  + R  IL+GL IA  NID II +IR           ++++F+L++ Q
Sbjct: 361 VIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++
Sbjct: 421 AQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYA 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                 +RRT     +    +   + +I +E + + ++ RG+I+          +     
Sbjct: 481 D-----KRRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +   E D ++  +   T D +L  +  GK Y      +       +   I  L+ + 
Sbjct: 534 IQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIE 593

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +     L   +  G       S+     + G   +++   +++  V 
Sbjct: 594 SQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQ 653

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G  ++ +  ++ + + F  + I  M R   GVR    ++     +    + +    +
Sbjct: 654 MTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEV-IGMEVLEDDEKVL 712

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        L  RGG+G        ++G  ++
Sbjct: 713 VVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K     L A+  +E D L        +  +++ +  G++   P  N+        A    
Sbjct: 632 KIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTA-AGVRG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           I L  + +++   V +   K+LVV+ KG       S+     R G   KT         +
Sbjct: 691 IRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNL 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  VTG+  + ++  +  L+ F ID + +  R   GV+L    +      + 
Sbjct: 751 VAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 804


>gi|218294962|ref|ZP_03495816.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23]
 gi|218244870|gb|EED11394.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23]
          Length = 805

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/757 (33%), Positives = 407/757 (53%), Gaps = 32/757 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   L++ ++ YA+S I +RA+PD+RDG KPV RRI+ A  + G+  G    KS
Sbjct: 3   QVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFAAYQEGVLPGRKHVKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEV+GK HPHGD ++YD+L RLAQP+  RYPL+ GQGNFG+IDGD  AA RYTEAR
Sbjct: 63  AKIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSIDGDPPAAQRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++ +   +LQ +D++ VDFR  Y+    EP V P+  PNLL NG SGIAVGMATS+P HN
Sbjct: 123 LSPIGAEMLQDMDKETVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A+IDNP I++E+++ ++ GPDFPTGG +  SR+ I E+Y  GRG  +VRA+
Sbjct: 183 LSEVVDALVAMIDNPGITLEEVMAHLPGPDFPTGGRL--SRKGIKEAYATGRGSLKVRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VEE       +VVTEIPYQV K+ LI +IA L+ AK+I  +  +RDES      +   
Sbjct: 241 VRVEE-KGSRPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P +++  ++  + +++ F +N+  +     P+V+ L  +++ +L HR+EV+ RR
Sbjct: 300 LKRGANPQVVLNQLYKHTALQSSFTVNLLAIV-EGEPRVLSLLDLMRHYLDHRKEVVRRR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAIL 432
           S F ++  + R  IL+GLLIA  +IDE+IA+IR  +         + RF L+E Q  AIL
Sbjct: 359 SLFDLRKAEERAHILEGLLIALDHIDEVIALIRASEDAPAARRGLMERFGLSEAQAQAIL 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  ++  E   L+ E  ++ ++L    + W ++  E+  VKE +  +   
Sbjct: 419 DMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEGRLWGEVKRELLRVKEKYGDA--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALH 544
             RRT   E   +      + +IE EP+ + ++ +G+++ L              L A  
Sbjct: 476 --RRTLLTEFEESFNP---EDLIEDEPMVITLTAQGFLKRLPLEAYRAQGRGGKGLMAGK 530

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602
            KE D       A   D +L+ S  G+ Y L   +L     +  G  ++ L+ L   +++
Sbjct: 531 TKEEDEATHVFVADAHDDLLVFSNRGRVYRLKVYDLPEMGRQARGVHVKTLLPLAEEEEV 590

Query: 603 VTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-G 658
                    +    L+  + +G        E       G   +++   +++  V      
Sbjct: 591 AALLAVRGLEGEGYLVFATERGLVKRTALKEYANLGTGGLIAIRLLEGDRLVGVALSDPE 650

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD--GGISDVICFKICEGLTWIDSA 715
           D   +     + + F ++++    R  +GV    +K     +  ++  K  E +  +  +
Sbjct: 651 DEAILATAEGQAIRFPLEEVRATGRDTQGVVGIRFKKPQDRVVSLVTVKPGEMVDLLSVS 710

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            R Y +        L  RGG+G +      R G+  +
Sbjct: 711 TRGYGKRTPLSEYPLQGRGGMGVITYAVSARVGRLAA 747



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 7/157 (4%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLV 616
             D  +L + +G+A   P   + +     + +  +        +V+           LL 
Sbjct: 649 PEDEAILATAEGQAIRFPLEEVRATGRDTQGVVGIRFKKPQDRVVSLVTVKPGEMVDLLS 708

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLI 672
           VS++G       SE     R G   +  +   +   +  ++KV G + + V+ +    L 
Sbjct: 709 VSTRGYGKRTPLSEYPLQGRGGMGVITYAVSARVGRLAALLKVRGTEDLLVLSKKGLTLR 768

Query: 673 FSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
             + +I + SR   GV++ +  +            E 
Sbjct: 769 TPVAEIRQYSRATAGVKIMNLPEEDEIASAFVVEEEK 805


>gi|257127027|ref|YP_003165141.1| DNA gyrase subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257050966|gb|ACV40150.1| DNA gyrase, A subunit [Leptotrichia buccalis C-1013-b]
          Length = 855

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/765 (34%), Positives = 414/765 (54%), Gaps = 20/765 (2%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           V+ +  +  L  E+   V +   ++  YL Y++S I  RA+PD+RDG KPVHRRI+ +MS
Sbjct: 28  VEGLPKATDLSNES--NVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMS 85

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           EMG+     FKKSARIVG+V+GK HPHGD SVY ++VR+AQ F  RY LI G GNFG+ID
Sbjct: 86  EMGMSHKTPFKKSARIVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSID 145

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEARM ++ E +L+ + +D +D+R  ++E   EPVV P+K PNLL NG +G
Sbjct: 146 GDEAAAMRYTEARMAKITEELLEDIRKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANG 205

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +  +ALIDNPEISI++L+ YI GPDFPTGG I+  ++ I ++
Sbjct: 206 IAVGMATNIPPHNLGEVVDGIIALIDNPEISIDELITYIKGPDFPTGG-IINGKQGIYDA 264

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  RV  R  VE    G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+R
Sbjct: 265 YRTGRGKLRVAGRVEVETSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLR 324

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DE+  D   ++    +  + +L++ S++  +D++  F + M  L     P+V+ L  IL+
Sbjct: 325 DETDRDGIRIVIELKKGEESELILNSLYKFTDLQNTFGVIMLALVD-NAPRVLNLKQILQ 383

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVS 419
           ++L HR EV+ RR+ F ++    R  IL+G  IA  NI+E+I IIR           +++
Sbjct: 384 KYLEHRFEVITRRTEFELKKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARAELIA 443

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F  +E Q  AIL++RL+ L  LE  +I  E + L+   E++  +L+   + +  I  E 
Sbjct: 444 KFGFSEIQAKAILDMRLQRLTGLERDKINQEYNELMLLIEELTGILSDDSKIYGIIKEEG 503

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            ++KE F        R               +  +   E   V        RS K   + 
Sbjct: 504 LKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYRSQKRGGIG 563

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           ++A +  E D +K    A   D +L+ +T GK +++    +     +  G+ I  +I+L+
Sbjct: 564 VNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKLIGNIINLD 623

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ + T      ++    L  V+  G     E +      + GK  ++++ ++++  + 
Sbjct: 624 DDEKVSTIIKVREFEKNKNLFFVTRNGVVKKSELTLFDNIKKAGKRAIRLNEDDEVMFIG 683

Query: 655 KVTG---DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE--- 707
             +G   D +    +N   + FS   +  M  G  GVR  + +D            E   
Sbjct: 684 LTSGSGEDEIFAATKNGIAIRFSEKDVRSMGTGAAGVRGINLRDEDKIVGAAIISSEMNK 743

Query: 708 -GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                +      Y +    L   L  RGG G +  K   ++GK +
Sbjct: 744 DDARILTITEEGYGKRTKLLEYRLTSRGGKGIINAKLNEKTGKIV 788



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 63/204 (30%), Gaps = 11/204 (5%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
                   V  S      ++K        L+  +             D I   + +G A 
Sbjct: 644 FFVTRNGVVKKSELTLFDNIKKAGKRAIRLNEDDEVMFIGLTSGSGEDEIFAATKNGIAI 703

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEE 628
                ++ S      A    I+L     IV A +          ++L ++ +G     + 
Sbjct: 704 RFSEKDVRSMGTGA-AGVRGINLRDEDKIVGAAIISSEMNKDDARILTITEEGYGKRTKL 762

Query: 629 SEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR- 683
            E    +R GK  +     EK   +  V  V   D + ++     L+  S+  +  + R 
Sbjct: 763 LEYRLTSRGGKGIINAKLNEKTGKIVDVKIVKDDDEIMLITSEGTLIRTSVKDVSVIGRS 822

Query: 684 GKGVRLQSYKDGGISDVICFKICE 707
             GVR+   ++      I     E
Sbjct: 823 ATGVRIMKVRNNEKIASIVKITEE 846


>gi|299820836|ref|ZP_07052725.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM
           20601]
 gi|299817857|gb|EFI85092.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM
           20601]
          Length = 840

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 409/760 (53%), Gaps = 28/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + V  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3   ETPNDRVTEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYFTMVRMAQHFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+
Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYADNYDGSEKEPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+H++ E+ +  LAL  +PEI I +L+EYI GPDFPT G ++  R  I  +Y  GRG  
Sbjct: 183 IPTHHLGEVIDGVLALSRDPEIEIRELMEYIPGPDFPTAG-LIMGRSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRAR  +EE   G   I++TEIPYQV K+RLIE+IAEL   K+I  + DI DES     
Sbjct: 242 VVRARVDIEEKKNGKETIIITEIPYQVNKARLIERIAELAREKKIDGITDINDESDRSGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R +   +++ +++ ++ ++T F +NM  L     P+V+ L  IL  +L H++ 
Sbjct: 302 RIVIEVRRDISASVIINNLYKMTALQTTFGINMLALVD-NHPKVLNLKQILYHYLEHQKI 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F ++  + R  IL+GL IA  NID +IA+IR+ +     K  ++++F L++ Q
Sbjct: 361 VIRRRTEFELRKAEARAHILEGLRIALDNIDAVIALIRSSNTTETAKEGLMTKFQLSDKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E  NL+     + ++L   ++    I  E+ E+K  ++
Sbjct: 421 AQAILDMRLQRLTGLERSKIEEEYQNLMTLINDLKAVLADEERILEIIREELEEIKIKYA 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                 +RRT     +        + +I +E + + ++ RG+I+          +     
Sbjct: 481 D-----KRRTEIL--TGDIVNIEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +   E D ++  + A + D +L  +  GK Y      +       +   +  L+ + 
Sbjct: 534 IQGMSTHEDDFVEHLVAASSHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPLINLLGIE 593

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +     L   +  G     + S+     + G   + +   +++  V 
Sbjct: 594 SQEQVNAVINVSEFTENSHLFFTTKHGVVKRTDISQFAKIRQSGLRAVDLRENDELISVQ 653

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G+ ++ +  +  + + F  + I  M R   GVR    ++      +   + +    +
Sbjct: 654 ITDGNKNIIIATKQGQSIYFPENNIRVMGRTAAGVRGIRLREDDEVIGMEI-LEDDQKVL 712

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        L  RGG+G        ++G  ++
Sbjct: 713 IVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKNGNLVA 752



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 67/185 (36%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+      +  K     L A+  +E D L           I++ +  G++   P  N+  
Sbjct: 621 VVKRTDISQFAKIRQSGLRAVDLRENDELISVQITDGNKNIIIATKQGQSIYFPENNIRV 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---K 639
                 A    I L  + +++   + +   K+L+V+ KG       ++     R G   K
Sbjct: 681 MGRTA-AGVRGIRLREDDEVIGMEILEDDQKVLIVTEKGYGKQTPAAQYPLRNRGGMGVK 739

Query: 640 TFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
           T         +  +  V+G+  + ++  +  ++ F I  + +  R   GV+L    +   
Sbjct: 740 TVTITEKNGNLVAMKTVSGEEDIMLMTVSGVMIRFEIGTVSQTGRSAMGVKLIRLDENEK 799

Query: 698 SDVIC 702
              + 
Sbjct: 800 VATVA 804


>gi|78185988|ref|YP_374031.1| DNA gyrase, subunit A [Chlorobium luteolum DSM 273]
 gi|78165890|gb|ABB22988.1| DNA gyrase subunit A [Chlorobium luteolum DSM 273]
          Length = 815

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/746 (33%), Positives = 392/746 (52%), Gaps = 29/746 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G   KKSAR+VGEV+GK
Sbjct: 1   MRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSARVVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYDSLVRL Q F  RYPLI GQGNFG+IDGDS AA RYTE RM Q+A  +L+
Sbjct: 61  FHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYTEVRMKQIAGEMLK 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   +++   EP V PS  PNLL NG SGIAVGMAT+IP  N++E+ +  +A
Sbjct: 121 DLDKETVDFALNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIPPQNLREVVDGMIA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRG 264
           LI NPE+ +  L++++I PDFPT G I+   E + ++Y  GRG   +RAR  +E     G
Sbjct: 181 LIGNPELEVSDLMKFVIAPDFPTAG-IIYGYEGVRQAYLTGRGKVVIRARALIEVTQKNG 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              IVVTE+PYQV K RLIEKI EL+  K+I  + DIRDES  D   ++    R     +
Sbjct: 240 RESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRLVIELKRDAVAKV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + M+  F + M  L    VP+++ L  +++ ++ HR E++ RR+ F + A +
Sbjct: 300 VLNNLYKHTPMQDTFGVIMLALVD-GVPRILNLKEMMQYYIKHRNEIVLRRTRFDLAAAE 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           RR  IL+GL I   N+DE+I  IR        +  ++ RF+L+E Q  AIL +RL+ L  
Sbjct: 359 RRAHILEGLKICLDNLDEVITTIRESPDANTAQDRLMERFALSEIQAKAILEMRLQRLTG 418

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           +E  +I +E    LA  +++  +L S ++Q   I  E+ +VKE++        RRT    
Sbjct: 419 MERQKIDAEYKETLATIDELRLILQSPERQMEIIRTELLKVKEVYGDE-----RRTEIVP 473

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKI 553
                     + MI +E + + +++ G+I+                ++    K  D ++ 
Sbjct: 474 QEGD---FSIEDMIAQEDVVITVTHDGFIKRFPVSGYRRQARGGKGVTGAQAKHDDFIEH 530

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDI---VTAFVY 608
              A T + IL  +  G+ Y L    +        G A+  +++L+ ++ I   +    +
Sbjct: 531 MFVASTHNYILFFTNTGRCYWLKVYEIPEAGRAARGRALANIMELHPDEKIKAYINIRNF 590

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
           D    +++ ++ G        E     R G   + +   + +       GDH V +   +
Sbjct: 591 DEPGYIIMATADGIVKKTALEEFSRPRRNGIAAITIDEGDALLDARLTDGDHQVILAKSS 650

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
             ++ F   Q+  M R   GV+  +   G     +          +      + +     
Sbjct: 651 GLVVRFPEVQVRPMGRTAMGVKGITLDRGEKCIAMVTTKRTDTALLAVTDNGFGKRSRVE 710

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLS 752
              L KRG  G +  K   + G  + 
Sbjct: 711 DYRLTKRGARGVITLKAHEKIGSLVG 736



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 9/203 (4%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
           +      V  +        + +   ++A+   EGD+L  A       +++L  + G    
Sbjct: 598 MATADGIVKKTALEEFSRPRRN--GIAAITIDEGDALLDARLTDGDHQVILAKSSGLVVR 655

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIA 633
            P   +         +   I L+  +  +       +   LL V+  G        +   
Sbjct: 656 FPEVQVRPMGRTAMGV-KGITLDRGEKCIAMVTTKRTDTALLAVTDNGFGKRSRVEDYRL 714

Query: 634 NTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
             R  +  + + + EK+  +V        D + ++  +  +    +  I    R   GV+
Sbjct: 715 TKRGARGVITLKAHEKIGSLVGLLDVNDDDDLILITTHGIVNRQHVSDIRITGRNTSGVK 774

Query: 689 LQSYKDGGISDVICFKICEGLTW 711
           L     G     +          
Sbjct: 775 LIRLMAGDTISALARVPKSDEET 797


>gi|145592575|ref|YP_001156872.1| DNA gyrase subunit A [Salinispora tropica CNB-440]
 gi|145301912|gb|ABP52494.1| DNA gyrase subunit A [Salinispora tropica CNB-440]
          Length = 839

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/765 (30%), Positives = 376/765 (49%), Gaps = 36/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      + 
Sbjct: 24  HDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYV 83

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RYTE
Sbjct: 84  KCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYPLVDGNGNFGSPGNDPAAAMRYTE 143

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT IP 
Sbjct: 144 CKLEPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLVNGSEGIAVGMATKIPP 203

Query: 194 HNVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           HN++EI  A    +++PE     ++E LL  + GPDFPT G ++  R  I ++YR GRG 
Sbjct: 204 HNLREIGAAVQWCLEHPEADEASTLEALLGIVKGPDFPTHG-LIVGRAGIQDAYRTGRGS 262

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            R+RA   VEE  RG   +VV+E+PYQV    L E+IAELI   ++  + DIRDES+   
Sbjct: 263 IRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSGRT 322

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R     +++ +++  + ++  F  NM  L    VP+ + L   ++ ++AH+
Sbjct: 323 GMRLVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVD-GVPRTLNLAQFIRYYVAHQ 381

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTE 425
            EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR                 + E
Sbjct: 382 IEVIRRRTAFRLRKAEERAHILRGLAKALDALDEVIALIRRSPTVDDARQGLIRLLEIDE 441

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  L  E      +L   ++Q   ++ E+ E+   
Sbjct: 442 IQATAILDMQLRRLAALERQRILDDLAKLELEIADFKDILAKPERQRRIVSEELGEIVAK 501

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
           +        RRT              + +I +E I V I+  G+ +  K  +        
Sbjct: 502 WGD-----DRRTQIIPFDGE---VSMEDLIAREDIVVTITRTGYAKRTKVDAYRSQRRGG 553

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID 595
             +S    ++ D +       T D IL  +  G+ Y   A  L       +   +  L+ 
Sbjct: 554 KGVSGASLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLA 613

Query: 596 LNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              ++ I              L++ +  G        E  +N   G   + +  ++++  
Sbjct: 614 FQPDEQIAQIIEISDYQVAPYLVLATKNGVVKKTRLEEFDSNRSGGIIAINLREDDELVG 673

Query: 653 VVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
              V     + +V +N   + F+     +  M R   GV    + +      +   +  G
Sbjct: 674 AALVAPEQDLLLVSKNALAIRFNATDEALRPMGRATSGVIGMRFSEDDELLAMEV-VRHG 732

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           L  + +    Y +        +  RGG G L  K   R G  + +
Sbjct: 733 LDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGA 777



 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 6/120 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           +  + + +++   V      +LV ++ G A      E     R GK  L     E+   +
Sbjct: 715 MRFSEDDELLAMEVVRHGLDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGL 774

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS-RGK-GVRLQSYKDGGISDVICFKICE 707
              V +   D +  +  N  ++   +  +     R   GV+L    DG     I     E
Sbjct: 775 VGAVVIDPDDELFAITSNGGVIRTPVKPVRRTRDRNTMGVKLMDLPDGVTIVAIARNADE 834



 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 40/136 (29%), Gaps = 3/136 (2%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F E D L           +L+ +  G A   P          
Sbjct: 699 DEALRPMGRATSGVIGMRFSEDDELLAMEVVRHGLDVLVATNGGYAKRTPIEEYPVQGRG 758

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT-RK--GKTFLK 643
           G+ +           +V A V D   +L  ++S G         +     R   G   + 
Sbjct: 759 GKGVLTAKITERRGGLVGAVVIDPDDELFAITSNGGVIRTPVKPVRRTRDRNTMGVKLMD 818

Query: 644 VSSEEKMKLVVKVTGD 659
           +     +  + +   +
Sbjct: 819 LPDGVTIVAIARNADE 834


>gi|169627127|ref|YP_001700776.1| DNA gyrase subunit A [Mycobacterium abscessus ATCC 19977]
 gi|169239094|emb|CAM60122.1| DNA gyrase (subunit A) GyrA (DNA topoisomerase) [Mycobacterium
           abscessus]
          Length = 839

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/778 (29%), Positives = 392/778 (50%), Gaps = 36/778 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +        + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++A
Sbjct: 1   MTDTTLPPGGDDAVDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+
Sbjct: 61  MYDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+
Sbjct: 121 PGNDPAAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT++P HN++E+ EA          + E +++ + E I GPDFPT G ++   
Sbjct: 181 GGIAVGMATNMPPHNLRELAEAVYWALDNHEADEETTLKAVCEKITGPDFPTSG-LIVGT 239

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I ++Y  GRG  R+R    +EE  +G   +V+TE+PYQV     I  IAE +   +I 
Sbjct: 240 QGIHDAYTTGRGSIRMRGVAEIEEDSKGRTSLVITELPYQVNHDNFITSIAEQVRDGKIA 299

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ +
Sbjct: 300 GISNIEDQSSDRVGLRIVVVLKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTL 358

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-- 413
            LD +++ ++ H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR       
Sbjct: 359 RLDQLIRLYVNHQLDVIIRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDI 418

Query: 414 -KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q 
Sbjct: 419 ARTGLIELLDVDEIQAQAILDMQLRRLAALERQKIIDDLAKIEAEIADLEDILAKPERQR 478

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +  E+ E+ E +        RRT       AD     + +I +E + V I+  G+ + 
Sbjct: 479 AIVKDELAEITEKYGD-----DRRTRII---SADGDVADEDLIAREDVVVTITETGYAKR 530

Query: 533 --------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-- 582
                    K     +     K+ D +K      T D IL  +T G+ Y   A +L    
Sbjct: 531 TKTDLYRSQKRGGKGVQGAGLKQDDIVKHFFVCSTHDWILFFTTKGRVYRAKAYDLPEAA 590

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L+     + I        Y+    L++ +  G     + +E  +N   G 
Sbjct: 591 RTARGQHVANLLAFQPEERIAQVIQIKSYEDAPYLVLATKNGLVKKSKLTEFDSNRSGGL 650

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
             + +   +++   V  +  D + +V  + + + FS     +  M R   GV+   + +G
Sbjct: 651 VAVNLRDGDELVGAVLCSAEDDLLLVSAHGQSIRFSATDEALRPMGRATSGVQGMRF-NG 709

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +    + EG   + +    Y++        +  RGG G L  +  PR G  + +
Sbjct: 710 EDDLLSLNVVREGTYLLVATSGGYSKRTAIEEYPVQGRGGKGVLTVQYDPRRGSLVGA 767



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 77/207 (37%), Gaps = 12/207 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ +  G ++  K    D +        + ++GD L  A+     D +LL+S 
Sbjct: 619 YEDAPYLVLATKNGLVKKSKLTEFDSNRSGGLVAVNLRDGDELVGAVLCSAEDDLLLVSA 678

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            G++    A +      G   +    +  N   D+++  V      LLV +S G +    
Sbjct: 679 HGQSIRFSATDEALRPMGRATSGVQGMRFNGEDDLLSLNVVREGTYLLVATSGGYSKRTA 738

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
             E     R GK  L V  + +   +   + V  +  +  +     ++     Q+ +  R
Sbjct: 739 IEEYPVQGRGGKGVLTVQYDPRRGSLVGALVVDEESELYAITSGGGVIRTIAKQVRKAGR 798

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGL 709
             KGVRL +  +G     I     EG 
Sbjct: 799 QTKGVRLMNLGEGDTLLAIAHNADEGD 825



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 43/150 (28%), Gaps = 8/150 (5%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F   D L           +L+ ++ G +              
Sbjct: 689 DEALRPMGRATSGVQGMRFNGEDDLLSLNVVREGTYLLVATSGGYSKRTAIEEYPVQGRG 748

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
           G+ +  +        +V A V D   +L  ++S G        ++    R  KG   + +
Sbjct: 749 GKGVLTVQYDPRRGSLVGALVVDEESELYAITSGGGVIRTIAKQVRKAGRQTKGVRLMNL 808

Query: 645 SSEEKMKLVVK------VTGDHVAVVGENR 668
              + +  +           D  A      
Sbjct: 809 GEGDTLLAIAHNADEGDADPDEDAAGTTAG 838


>gi|284988640|ref|YP_003407194.1| DNA gyrase subunit A [Geodermatophilus obscurus DSM 43160]
 gi|284061885|gb|ADB72823.1| DNA gyrase, A subunit [Geodermatophilus obscurus DSM 43160]
          Length = 822

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/762 (30%), Positives = 376/762 (49%), Gaps = 20/762 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + T   + ++ V L+  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G   
Sbjct: 2   TETPARDRIEPVDLQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDQGFRP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             ++ K AR+VGEV+G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   D AAA
Sbjct: 62  DRSYVKCARVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPGNDPAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+T +A  +L  +DE+ VDF+  Y+ ++ EP+V P + PNLL NG++GIAVGMA
Sbjct: 122 MRYTEARLTPLAMEMLANIDEETVDFQPNYDGKNQEPLVLPGRIPNLLINGSAGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYR 244
           T++P HN++E+ +A   ++D+PE   E+     +E + GPDFPT G ++  RE I E+YR
Sbjct: 182 TNMPPHNLREVSDAVFWMLDHPEAEPEEALTACMERVKGPDFPTHG-LIVGREGIEEAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA   VEE  RG   +VVTE+PYQV    L E IAE +   R+  + +I DE
Sbjct: 241 TGRGSVRMRAVVTVEEDARGRVQLVVTELPYQVNPDNLAEAIAEAVRDGRLQGISEIADE 300

Query: 305 -SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            S    R ++    R     +++ +++  + ++T F  NM  +    VP+ + LD +++ 
Sbjct: 301 SSDRVGRRLVITLRRDAVAKVVLNNLYKHTQLQTTFGCNMLSIVD-GVPRTLRLDELVRY 359

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF-- 421
           ++ H+ EV+ RR+ +R++  + R  IL+GL  A   +D +IA+IR+              
Sbjct: 360 YVLHQIEVIQRRTRYRLRKAEERAHILRGLAKALDQLDAVIALIRSSASADAARSGLMDL 419

Query: 422 -SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q  AIL+++LR L  LE  +I  EL  L      + ++L+S ++Q   I  E+ 
Sbjct: 420 LDIDEIQATAILDMQLRRLAALERQRILDELAELEDRIADLQAILDSPERQRQIIRDELA 479

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           E+ E +                     A  +  +          +     RS +     +
Sbjct: 480 EIVEKYGDDRRTKFVANDGDVSMEDLIAEEEVVVTITRTGYAKRTKSDLYRSQRRGGKGV 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                K+ D +       T D IL  +  G+ Y   A  L           +  ++    
Sbjct: 540 MGAALKQDDIVDHFFVGSTHDWILFFTNKGRVYRAKAYELPEANRTARGAHVANILAFQP 599

Query: 599 NQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ I              L++ ++ G       ++  +    G   + +   +++     
Sbjct: 600 DEKIAQVMQIKDYGVAPYLVLATANGQVKKTRLTDFDSPRSGGVIAINLRESDELVGAAL 659

Query: 656 VTGD-HVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
           +  D  + +V      + F  D   +  M R   GVR  +      S +    + EG+  
Sbjct: 660 IDPDQDLLLVTRKAMSIRFKADDATLRPMGRATEGVRGIALSPDD-SLLSMIVVEEGVDV 718

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + +  R + +           RGG G L      R G  + +
Sbjct: 719 LVATERGFAKRTGIENYPAQGRGGKGVLTADPKSRKGNLVGA 760



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L+ +  +++  V +    +LV + +G A         A  R GK  L    + +   +
Sbjct: 698 IALSPDDSLLSMIVVEEGVDVLVATERGFAKRTGIENYPAQGRGGKGVLTADPKSRKGNL 757

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS-RGK-GVRLQSYKDGGISDVIC 702
              + V  GD +  +     ++   ++ +     R   GV+L +  +      I 
Sbjct: 758 VGALSVRLGDELYAITSGGGVIRTPVNGVRHNKDRATMGVKLMNLPEDVSIVAIA 812


>gi|254511118|ref|ZP_05123185.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium KLH11]
 gi|221534829|gb|EEE37817.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium KLH11]
          Length = 782

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/782 (50%), Positives = 522/782 (66%), Gaps = 38/782 (4%)

Query: 4   DNISNSNTLVEENVKAV--SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           D I + N    +N   +   LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM
Sbjct: 3   DTIDDPNMEAPDNGGEIAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 62

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNI
Sbjct: 63  RELRLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 122

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD+ AA RYTEARMT VAE +L+G++EDAVDFRD Y+   +EPVV P++FPNLLANG+S
Sbjct: 123 DGDNPAASRYTEARMTIVAEALLEGLNEDAVDFRDNYDGTLTEPVVLPAQFPNLLANGSS 182

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+C+A L LI  P+   + LL Y+ GPDFPTGG+IVE  E+I +
Sbjct: 183 GIAVGMATNIPPHNISELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGVIVEPPENIAQ 242

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG FR+R ++ VE++GRG W IVVTEIPYQVQKS+LIEKIAELI  K+IP+L D+
Sbjct: 243 AYRTGRGSFRLRCKFEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADV 302

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDESA+D+R++L P+++++DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L
Sbjct: 303 RDESADDIRLILEPRSKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVL 362

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + +L HR+EVL RRS  RM  ID R+E+L+G ++A+LN+D +I IIR +D PK  ++   
Sbjct: 363 RAFLDHRQEVLLRRSRHRMAKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDPKAALMRED 422

Query: 422 S----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  L+E QVDAILN+RLRSLR+LEE ++  E D L+ E+ 
Sbjct: 423 WGIDHVRATSEADYVSPKPGEGELSEVQVDAILNMRLRSLRRLEEMELVRERDELMLERA 482

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            ++ LL     QW +IA ++RE K+ F K  + G RRT F E  +  +    +AMI++EP
Sbjct: 483 NLEDLLADPALQWAKIAEQLRETKKTFGKDYEGGARRTQFAEAGQV-EEVPLEAMIDREP 541

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           ITVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+ +++G+ YT+ A N
Sbjct: 542 ITVVCSQMGWIRAMTGHIDLKRELKFKDGDGPRFIFHAETTDRLLVFASNGRFYTVSAAN 601

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L  GRG GE ++L++DL +   I+   ++    KLLV S  GN F+V E +++A TR GK
Sbjct: 602 LPGGRGMGEPLRLMVDLPNEAQIIDILIHKPGRKLLVASDAGNGFMVPEDDVLAQTRNGK 661

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------ 693
             L V   E   +   V GDHVAVV +N K L+F  +++PEM+RGKGVRLQ Y       
Sbjct: 662 QVLNVKGGETAMICKPVDGDHVAVVSQNGKFLVFPTNELPEMTRGKGVRLQKYNMARGRQ 721

Query: 694 -----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                DGG+SD+  F   EGL W  S G    R E D+  WL KR GVG   P GFPR  
Sbjct: 722 GTLELDGGLSDITTFNWEEGLKW--SMGGDKTRHEADMTQWLAKRAGVGKKAPYGFPRDY 779

Query: 749 KF 750
           KF
Sbjct: 780 KF 781


>gi|257466635|ref|ZP_05630946.1| DNA gyrase subunit A [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917789|ref|ZP_07914029.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691664|gb|EFS28499.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563]
          Length = 811

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/757 (33%), Positives = 410/757 (54%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N+    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKK
Sbjct: 2   SNISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++   +L+ +D++ +DFR  +++   EP V PSK P+LL NG++GIAVGMAT+IP H
Sbjct: 122 RMSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ + +L LIDNPEIS  +L+EYI GPDFPTGGII   ++ I ++Y  GRG  RVR 
Sbjct: 182 NLGELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGIID-GKKGIRDAYLTGRGKIRVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G + +++ EIPYQ+ KS LIE+IA L+  K+I  + D+RDES  +   V+ 
Sbjct: 241 KVKIEENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  +++++ F + M  L    VP+V+ L  +L E+++HR +V+ R
Sbjct: 301 ELKKGEEPELVLNKLYKYTELQSTFGVIMLALV-NNVPKVLTLKQMLCEYISHRFQVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAI 431
           R+ F +    +R  IL+G  IA  NI+ II +IR+          ++ +++ TE Q  +I
Sbjct: 360 RTLFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFTEIQAKSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++++E  +L     ++  +L+   + ++ +  E+ +VK+ +     
Sbjct: 420 LDMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSYDNKIYDIMKQELLKVKDTYGD--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
             +RRT   E        L + +I+ E + +  +N+G+I+                ++ L
Sbjct: 477 --KRRTHIEE---ERMEILPEDLIKDEEMIITCTNKGYIKRIEANKYKSQNRGGKGVTGL 531

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-- 601
           +  + D +   L A   D +++ +  GK Y +    L           +   L   ++  
Sbjct: 532 NTIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLISNLLRIGEEEK 591

Query: 602 ---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
              I+   V+D   +L+ V+ +G        E       G   +K   E+ +  V  V  
Sbjct: 592 IRAIIKTRVFDKEKELVFVTKQGIVKKTSLEEFKNINTGGLIAIKFKEEDDLIYVGLVEA 651

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + V +       + F  D +    R   GV+    ++G           + +  +   
Sbjct: 652 AENEVFIATRKGFAVRFPNDNVRPTGRNTMGVKGIELREGDEVVSALLIKEKEMDILTIT 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +           RGG G +  +   ++G  +S
Sbjct: 712 ENGYGKRTRLDEYPSHNRGGKGVINLRCNEKTGNIVS 748



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 5/145 (3%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           + + +  G A   P  N+     +   ++ +     ++ +    + +    +L ++  G 
Sbjct: 656 VFIATRKGFAVRFPNDNVRPTGRNTMGVKGIELREGDEVVSALLIKEKEMDILTITENGY 715

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQI 678
                  E  ++ R GK  + +   EK   +V V      + +  +  N  ++   ++ I
Sbjct: 716 GKRTRLDEYPSHNRGGKGVINLRCNEKTGNIVSVLTALDEEELVCITSNGIIIRTPMNSI 775

Query: 679 PEMSR-GKGVRLQSYKDGGISDVIC 702
              SR  +GV +           I 
Sbjct: 776 SRFSRAAQGVIIMKVALDEKVASIT 800


>gi|320449577|ref|YP_004201673.1| DNA gyrase subunit A [Thermus scotoductus SA-01]
 gi|320149746|gb|ADW21124.1| DNA gyrase, subunit A [Thermus scotoductus SA-01]
          Length = 805

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/758 (33%), Positives = 407/758 (53%), Gaps = 32/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             V  V +   L++ ++ YA+S I +RA+PD+RDG KPV RRI+    + G+  G    K
Sbjct: 2   SQVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+IVGEV+GK HPHGD ++YD+L RLAQP+  RYPL+ GQGNFG++DGD  AA RYTEA
Sbjct: 62  SAKIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSLDGDPPAAQRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +   +L  +D++ VDFR  Y+    EP V PS  PNLL NG SGIAVGMATS+P H
Sbjct: 122 RLSPLGAEMLLDIDKETVDFRPNYDGSLKEPEVLPSAIPNLLVNGASGIAVGMATSLPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A +A+IDNP I++E+++ Y+ GPDFPTGG +  SR+ I E+Y  GRG  +VRA
Sbjct: 182 NLSEVVDALVAMIDNPGITLEEVMRYLPGPDFPTGGKL--SRKGIQEAYATGRGSLKVRA 239

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE       +VVTEIPYQV K+ LI +IA L+ AK+I  +  +RDES      +  
Sbjct: 240 KVRIEE-KGQRPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAI 298

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P +++  ++  + ++T F +N+  +     P+V+PL  +++ +L HR+EV+ R
Sbjct: 299 ELKRGASPQVVLNQLYKHTALQTSFTVNLLAIV-NGEPKVLPLLSLMRHYLDHRKEVVRR 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           RS F ++  + R  +L+GLLIA  +IDE+IA+IR            + RF L+E Q  AI
Sbjct: 358 RSLFDLKKAEERAHVLEGLLIALDHIDEVIALIRASQDASEARKGLMERFGLSEIQAQAI 417

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++  E   L+ E  ++ ++L    + W ++  ++  VKE +  +  
Sbjct: 418 LDMRLQRLVALEREKLLEEYRELMEEIARLKAILEEEGRLWAEVKKDLLRVKEKYGDA-- 475

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RRT   E   +      + +IE EP+ + ++ +G+++ L   S          L A 
Sbjct: 476 ---RRTVITEFEDSFNP---EDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLIAG 529

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             KE D       A   + +LL +  G+ Y L    L     +  G  ++ L+ L   ++
Sbjct: 530 KTKEEDEAIQVFVAQAHEDLLLFTNRGRVYRLKVYELPEMGRQARGVHVKTLLPLAEEEE 589

Query: 602 IVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
           +         D    L+  + +G        E       G   +++   +++  V     
Sbjct: 590 VAALLSVRGLDGEGYLVFATERGLVKRTALREYQNLGAAGLIAIRLLEGDRLIGVALSDP 649

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD--GGISDVICFKICEGLTWIDS 714
            D   +  E  + + F+++++    R  +GV    +K     +  ++  K  E +  +  
Sbjct: 650 EDEAILATEEGQAIRFALEEVRATGRDSQGVTGIRFKKPGDRVVSLVTVKPGEMVDLLAV 709

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + R Y +        L  RGG+G +  K   + G+  +
Sbjct: 710 STRGYGKRTPLAEYPLQGRGGMGVITYKVSTKVGRLAA 747



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 8/157 (5%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLV 616
             D  +L + +G+A       + +     + +  +        +V+           LL 
Sbjct: 649 PEDEAILATEEGQAIRFALEEVRATGRDSQGVTGIRFKKPGDRVVSLVTVKPGEMVDLLA 708

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLI 672
           VS++G       +E     R G   +         ++  ++KV G + + V+ +    + 
Sbjct: 709 VSTRGYGKRTPLAEYPLQGRGGMGVITYKVSTKVGRLAALLKVRGTEDLLVLSKKGLAIR 768

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +  I + SR   GV++ +  +     V  F + E 
Sbjct: 769 TPVADIRQYSRDTAGVKVMNLPEDDEV-VSAFAVEEE 804



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            +ST G     P          G  +           +        T  LLV+S KG A 
Sbjct: 708 AVSTRGYGKRTPLAEYPLQGRGGMGVITYKVSTKVGRLAALLKVRGTEDLLVLSKKGLAI 767

Query: 625 IVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTGDH 660
               ++I   +R   G   + +  ++++     V  + 
Sbjct: 768 RTPVADIRQYSRDTAGVKVMNLPEDDEVVSAFAVEEEQ 805


>gi|289523659|ref|ZP_06440513.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503351|gb|EFD24515.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 812

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/764 (32%), Positives = 403/764 (52%), Gaps = 29/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S+ +    V  + +   ++  YL YA+S I  RA+PD +DG KPV RRI++AM E+G
Sbjct: 1   MAESSNI--GKVLRLPIEEEIKLSYLDYAMSVIVGRALPDAKDGLKPVQRRILYAMMELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     ++KSARIVGE +GK HPHGD ++YD++VR+AQ F  RYPL+ GQGNFG+IDGD 
Sbjct: 59  LRSNQPYRKSARIVGETMGKYHPHGDAAIYDAMVRMAQDFSMRYPLVDGQGNFGSIDGDP 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ + E +L+ ++ED VD+   ++E   EP+V PS  PNLL NG+SGIAV
Sbjct: 119 PAAMRYTEARLSPLGEEMLRDINEDTVDWGPNFDETLQEPLVLPSLLPNLLVNGSSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDN-PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           GMAT+IP HN+ E+ +A   LID   ++ +  ++E + GPDFPTGG I   RE I+ +YR
Sbjct: 179 GMATNIPPHNLSEVVDALCLLIDRGEDVELGDIIEVMPGPDFPTGGTIT-GREGIINAYR 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +R R  +E++ RG   ++VTEIPY V K  LIE IA  +    +  + D+RDE
Sbjct: 238 TGRGKIVLRGRVSIEQMKRGKTSLIVTEIPYMVNKVTLIEIIARGVQEGYLTGIADLRDE 297

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  D   V+    R  DP L+++ ++  + ++T F +    L    VP+ + L  +LK +
Sbjct: 298 SDRDGIRVVIELQRDADPHLVLKQLYSRTPLQTTFGVINLALVD-GVPRELGLIELLKIF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRF 421
           L HRR+V+ RR+++R++  + R  I++GL+ A   IDEIIA+I+     +      +  F
Sbjct: 357 LDHRRDVVRRRTNYRLRKAEERAHIVEGLVKALDMIDEIIALIKRSKDAQEARVGLMDNF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             TE Q  AIL++RL+ L  LE  +++ EL +LL + E   S+L +     + +  E+ E
Sbjct: 417 GFTELQAQAILDMRLQRLTNLERSKLEEELRHLLKDIEMYHSILENPSVLDSVVKEELTE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           +K  +  +           E+           +I +E I VV+S  G++R        L 
Sbjct: 477 LKRQYGDARKT--------EIVDELVEVADDELIPEEDIVVVLSKDGYLRRASLGDYHLQ 528

Query: 542 ALH-------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG-NLLSGRGHGEAIQLL 593
                      ++ D +++     T   I L ++ G+ + +          G G+ +   
Sbjct: 529 GRGGKGIKGLKQKDDEVEMFAATTTHHDIFLFTSKGRVFAIKGYLLPEPKNGKGKHVSSF 588

Query: 594 IDLNHNQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             L  N+ +V            +   + +G A  ++ SE+   TR G+  + +   + + 
Sbjct: 589 FTLEENERVVAIKEDTMHGARFVFFATERGIAKRLDVSELANLTRAGRRVITLDDGDFIA 648

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V   +G D +  V    + L  S  +   M R  +GVR     +  +  V C  + EG+
Sbjct: 649 RVRFTSGEDELLFVSAKGQALRTSEQEFRPMGRQARGVRAIRLSESDVL-VGCEPLQEGM 707

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  + +   +  +     L  RGG G    +   R+G  + +
Sbjct: 708 AILFISEKGVGKRTSFDEFPLHHRGGSGVRAMRLSSRTGSLVGA 751



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 55/174 (31%), Gaps = 6/174 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
               +   +GD +         D +L +S  G+A                 ++  I L+ 
Sbjct: 635 GRRVITLDDGDFIARVRFTSGEDELLFVSAKGQALRTSEQEFRPMGRQARGVR-AIRLSE 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS--EEKMKLVV 654
           +  +V          +L +S KG        E   + R   G   +++SS     +    
Sbjct: 694 SDVLVGCEPLQEGMAILFISEKGVGKRTSFDEFPLHHRGGSGVRAMRLSSRTGSLVGAWS 753

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
               D V +V    ++   ++  +P +SR   G  L     G     I     +
Sbjct: 754 VTEDDEVMIVTSKGRVTRIAVRNVPVLSRTATGSILVRLDQGDSVADITIVRDD 807



 Score = 42.5 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 51/151 (33%), Gaps = 2/151 (1%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + +        + ++    R +   +  + A+   E D L           IL +S  G
Sbjct: 657 DELLFVSAKGQALRTSEQEFRPMGRQARGVRAIRLSESDVLVGCEPLQEGMAILFISEKG 716

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                           G  ++ +   +    +V A+      ++++V+SKG    +    
Sbjct: 717 VGKRTSFDEFPLHHRGGSGVRAMRLSSRTGSLVGAWSVTEDDEVMIVTSKGRVTRIAVRN 776

Query: 631 --IIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             +++ T  G   +++   + +  +  V  D
Sbjct: 777 VPVLSRTATGSILVRLDQGDSVADITIVRDD 807


>gi|116871429|ref|YP_848210.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116740307|emb|CAK19425.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 842

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 405/760 (53%), Gaps = 28/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+H++ E+ +  LAL  +PEISI  L+EYI GPDFPT G+I   R  I  +Y  GRG  
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMI-MGRSGIRRAYESGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES     
Sbjct: 242 TVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ 
Sbjct: 302 RIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVD-NHPKVLNLKEILYYYLEHQKV 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQ 427
           V+ RR+ F ++  + R  IL+GL IA  NID II +IR           ++++F+L++ Q
Sbjct: 361 VIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++
Sbjct: 421 AQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYA 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                 +RRT     +    +   + +I +E + + ++ RG+I+          +     
Sbjct: 481 D-----KRRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +   E D ++  +   T D +L  +  GK Y      +       +   I  L+ + 
Sbjct: 534 IQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIE 593

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +     L   +  G       S+     + G   +++   +++  V 
Sbjct: 594 SQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQ 653

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G  ++ +  ++ + + F    I  M R   GVR    ++G    +    + +    +
Sbjct: 654 MTDGSKNMIIATKHGQSIYFPEANIRVMGRTAAGVRGIRLREGDEV-IGMEVLEDNEKVL 712

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        L  RGG+G        ++G  ++
Sbjct: 713 IVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKNGNLVA 752



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K     L A+  +E D L        +  +++ +  G++   P  N+        A    
Sbjct: 632 KIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEANIRVMGRTA-AGVRG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           I L    +++   V +   K+L+V+ KG       ++     R G   KT         +
Sbjct: 691 IRLREGDEVIGMEVLEDNEKVLIVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKNGNL 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  VTG+  + ++  +  L+ F ID + +  R   GV+L    +      + 
Sbjct: 751 VAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDENEKVATVA 804


>gi|76802388|ref|YP_327396.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160]
 gi|76558253|emb|CAI49841.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160]
          Length = 821

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/766 (32%), Positives = 386/766 (50%), Gaps = 20/766 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D + ++  +  E ++ V +   +E+ Y+ YA+S I  RA+PD RDG KPV RRI++A
Sbjct: 1   MSSD-VPDTPDVPAEEIEPVRIEDEMEQSYIDYAMSVIVGRALPDARDGLKPVQRRILYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMG+   +  +KS+ IVGE +G  HPHGD ++YD+L R+AQ F  RYPL+ GQGNFG+
Sbjct: 60  MEEMGVTSRSGHRKSSSIVGETMGNYHPHGDSAIYDALARMAQDFSLRYPLVDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTEARM  +AE +L  +D+D VDF   Y++  +EPVV P++ PNLL NG 
Sbjct: 120 VDGDPPAAMRYTEARMAPIAEELLADIDKDTVDFESNYDDRLTEPVVLPARVPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISI------EKLLEYIIGPDFPTGGIIVE 234
           SGIAVGM+T+IP HN+ E+ +AA+ LIDNP+ ++           YI GPDFPTG  IV 
Sbjct: 180 SGIAVGMSTNIPPHNLGEVIDAAIHLIDNPDCAVADLIDTPDSDGYIKGPDFPTGANIV- 238

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
           +RE I ++Y  GRG  RVRA   +E   RG   IVVTE+PYQ  K+R IE+IAE +   +
Sbjct: 239 NREGIWDAYTEGRGRLRVRAEMDIERTDRGGDRIVVTELPYQENKARRIERIAEDVQEGK 298

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + DIRDES  D   V+    R  + D++  +  +   +E  F +    L     P+V
Sbjct: 299 IEGIRDIRDESDRDGVRVVIECKRGSNADVVK-NQLLEHHLENTFSIISLALVDD-QPRV 356

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP- 413
           + L  +L+ ++ HRREV+ RRS F +Q    R  IL+G L+A  N+D+++  I+N D   
Sbjct: 357 LNLKELLEAFVGHRREVVRRRSQFELQEAKDRAHILEGRLVALDNVDDVVDHIQNSDDRD 416

Query: 414 --KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                +   + L+E+Q + I+ ++L SL  +E  +I++E +++ AE E+++++LN   + 
Sbjct: 417 AAMAALRKAYDLSEDQAEHIVRMQLGSLTSMEAGEIETEYEDVQAEIERLETILNDESEL 476

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I  E+R++K  ++                    A  +  ++  E   V         
Sbjct: 477 LGVIKDELRDIKAEYADERQTDVIEDAGSVTREDLIAEEEVVVVVTEEDYVKRMPLSEFD 536

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEA 589
                   +     KEGD +     A T D +L  +  G+ Y L    L        G +
Sbjct: 537 PQHRGGKGIIGSRPKEGDRVSTVFTASTHDYLLCFTNQGQVYRLKVFELPEMGRTARGTS 596

Query: 590 IQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
              ++DLN  ++I      D      L + +  G       SE       G   + +  +
Sbjct: 597 AVNVLDLNDGEEITAVVNTDDIDEGYLAMATEAGYVKRTAVSEFENVHAGGIRAVSLEDD 656

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS-DVICFK 704
           + +  V    GD  + V  ++   + F       M R  +GV     +    +  ++   
Sbjct: 657 DSLVDVEVTDGDGDLLVGTKHGMTIRFDESDARPMGRSARGVNGIKLEGDDRATGLVAAS 716

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             +    +      Y +           R G G +  K   R+G  
Sbjct: 717 SDDDRDLLTVTKNGYGKRTPLSEYRRQSRYGKGLVDIKTDERNGPV 762



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 7/158 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
             H+  + A+  ++ DSL           +L+ +  G        +          +   
Sbjct: 642 NVHAGGIRAVSLEDDDSLVDVEVTDGDGDLLVGTKHGMTIRFDESDARPMGRSARGV-NG 700

Query: 594 IDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-- 649
           I L  +           D    LL V+  G       SE    +R GK  + + ++E+  
Sbjct: 701 IKLEGDDRATGLVAASSDDDRDLLTVTKNGYGKRTPLSEYRRQSRYGKGLVDIKTDERNG 760

Query: 650 -MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK 685
            +  +  V+ D  + ++ E+ +++  ++D+I  + R  
Sbjct: 761 PVCSLDAVSEDDGLVIMSESGQIMRTTVDEISTVGRNT 798


>gi|144899944|emb|CAM76808.1| DNA gyrase, subunit A [Magnetospirillum gryphiswaldense MSR-1]
          Length = 894

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/813 (30%), Positives = 390/813 (47%), Gaps = 67/813 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++   +  + +V  V++   +   YL YA+S I  RA+PD+RDG KPVHRRI+ AM E G
Sbjct: 1   MTAIPSPSQFDVTPVTIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMKEGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   F+KSARIVG+V+GK HPHGD ++YD++VR+AQ F  R PLI GQGNFG++DGD 
Sbjct: 61  YDYNKPFRKSARIVGDVMGKYHPHGDSAIYDAMVRMAQSFSMRLPLIDGQGNFGSMDGDK 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM + A  +++ +D+D VDF   Y++   EP+V P+++PNLL NG  GIAV
Sbjct: 121 AAAMRYTEARMARSAHFLIEDIDKDTVDFGPNYDDSSVEPLVLPARYPNLLVNGAGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  A+IDNP+I+ E+++E + GPDFPTGG I+  R  I  +   
Sbjct: 181 GMATNIPPHNLGEVIDACCAMIDNPDITPEEVMELVPGPDFPTGGTIL-GRSGIRAAQLT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +EEV +    I+VTE+PYQV K+R+IE+IAEL+  K+I  + D+RDES
Sbjct: 240 GRGSVVMRGRCHIEEVRKDREAIIVTEVPYQVNKARMIEQIAELVRDKKIEGVSDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R    D+++  ++  + ++T F +N   L+ G  PQ+M L  I+  +L
Sbjct: 300 DRDGVRVVIEIKRDAIADVVLAQLYKFTPLQTSFGVNSLALN-GGRPQMMTLREIIAAFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--- 422
             R EV+ RR+ F +     R  +L GL IA  NID++I +IR    P        +   
Sbjct: 359 RFREEVITRRTIFELGKARDRAHVLVGLSIAVANIDDMIKLIREASDPAVAREQLMARKW 418

Query: 423 -------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                    L+E Q  AIL+LRL  L  LE  +I  EL  +  +
Sbjct: 419 PALDVEPLIRLIDEPGRGIVDGTYSLSEVQAKAILDLRLHRLTGLERDKIGDELREIGEQ 478

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            ++   +L+S  +    +  E+ +++  F+         + F        A     +   
Sbjct: 479 IKEFLEILSSRPKLLEVMRNELIDMRNQFATPRRTTIEDSEFEADIEDLIAREDMVVTVT 538

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               +        R+ K      S +  K+ D L       T   +L  S+ G AY L  
Sbjct: 539 NTGYIKRVPLSTYRAQKRGGKGRSGMSMKDEDFLSQVFVTSTHTPVLFFSSTGIAYKLKV 598

Query: 578 GNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
             L   + +  G+A+  ++ L   + I T               +   +SKG+      S
Sbjct: 599 YRLPLGTPQARGKAMVNILPLGEGETISTVMPMPEDETTWGDLHVAFATSKGDVRRNLLS 658

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSR-GKG 686
           + +     GK  +K++  E++  V   +  D + +     K + F +  +     R   G
Sbjct: 659 DFVDIRANGKIAMKLNDGEQLIAVQPCSDSDDILLATRLGKAIRFQVGDVRVFKGRDSTG 718

Query: 687 VRLQSYKDGGISDVICFK--------------------------ICEGLTWIDSAGRSYN 720
           VR     D      +                                    +      Y 
Sbjct: 719 VRGIRLDDADQVISMSVLRHVEFDMETRDAYLRNDLTGPEAERMSESEQMILTVTENGYG 778

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +     +  RGG G        ++G  ++S
Sbjct: 779 KRTSAYEYRITGRGGQGIANIDLTEKNGPVVAS 811


>gi|148927749|ref|ZP_01811184.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1]
 gi|147886903|gb|EDK72438.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1]
          Length = 843

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/781 (32%), Positives = 402/781 (51%), Gaps = 38/781 (4%)

Query: 1   MGVDNISNSNTLVEENVKAV----------SLRFALEERYLAYALSTIKERAIPDLRDGF 50
           M  D I+++     E ++            ++   +E+ +L Y++S I ERA+PD+RDG 
Sbjct: 1   MNDDTITSNTAQEGEVIEPQQSHSRSLELRTVESVMEDSFLRYSMSVIIERALPDVRDGL 60

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRRI+ +M + G   G  F KSARI G+V+GK HPHGD ++YDS+VRLAQ +  RY 
Sbjct: 61  KPVHRRILFSMEKNGWRPGTRFVKSARITGDVMGKYHPHGDAAIYDSMVRLAQDWSMRYM 120

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFG++DGD  AA RYTEARM +    +L  +D++ VDFRD Y+ E+ EP V P+
Sbjct: 121 LVDGQGNFGSMDGDPPAAARYTEARMAKPGAELLADLDKNTVDFRDNYDGEEREPTVLPA 180

Query: 171 KFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI-SIEKLLEYIIGPDFPTG 229
           K PNLL NG  GIAVGMAT+IP HN+ E+ +A + +ID P+  ++E LL+Y+ GPDFPTG
Sbjct: 181 KLPNLLLNGQIGIAVGMATNIPPHNLSELVDAVVHMIDYPDDTTLEDLLKYVKGPDFPTG 240

Query: 230 GIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL 289
           GI+    +S+ ++Y  GRGG  VRA   +EE  +G   IVVTE+PY V K+ LIE+IAEL
Sbjct: 241 GIVYGG-DSMRQAYATGRGGITVRAIAEIEETKKGKHQIVVTEMPYAVNKATLIERIAEL 299

Query: 290 IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
              K+I  ++D+RDESA     ++    +   P  ++  ++ ++ ++T F  NM  L  G
Sbjct: 300 HKEKKIT-IQDVRDESARGKVRLVIELKKDSYPKKVLNQLYKMTALQTSFHYNMLALVDG 358

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
             P+V+ L  IL+E+L HR+ V+ RR+ F +     R  IL+G  IA  NIDE+I IIR 
Sbjct: 359 IQPRVLGLQDILEEYLKHRKTVVRRRTEFELAKAKDRAHILEGWKIALDNIDEVIKIIRA 418

Query: 410 EDKPKP---VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                     ++ +F L+E Q  +IL L LR+L  LE  +I+ EL  L A   K++++L 
Sbjct: 419 SQNTDEAARNLMDKFKLSEVQAKSILALPLRTLTGLERQKIEDELAELRALIAKLEAILA 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK------EPI 520
             K+    I  E+ E+KE +        RRT          +  +    E          
Sbjct: 479 DEKEILKIIKAELLEMKEKYGDE-----RRTKIISQELGKFSDEELIPDEDVIVLLTTEN 533

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            +  +     R           +  KE D +   + A T + +L  +  G+ + +    +
Sbjct: 534 YIKRTLVSEYRRQHRGGKGKRGMTTKEMDVIDQLVPASTHEWLLFFTNRGRVFRIKTYEV 593

Query: 581 LSGRGHGE--AIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIAN 634
            +     +  A   L+ L   + I +    +        L + ++ G        E    
Sbjct: 594 PAASLTAKGVAAVNLLQLQPEERITSIIRLEKGQKDDGYLFMATTHGTVKKTPLKEYSNI 653

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
              G   +K+   ++++ + + +G + V +     + + F+      M R  +GVR    
Sbjct: 654 RTNGLIAIKLDDGDELRWIRRSSGQNEVIMSTAFGQAIRFNESDARPMGRSARGVRGIRL 713

Query: 693 KDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + G    ++   +  E    +  + + Y ++         KRGGVG        ++G  +
Sbjct: 714 RPGDR--LVGMDLAFEDHKLLVVSQKGYGKTTKTNNFPAHKRGGVGIKSAVVTAKTGNVV 771

Query: 752 S 752
           +
Sbjct: 772 A 772



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 67/180 (37%), Gaps = 7/180 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+   +GD L+    +   + +++ +  G+A      +          ++  
Sbjct: 652 NIRTNGLIAIKLDDGDELRWIRRSSGQNEVIMSTAFGQAIRFNESDARPMGRSARGVRG- 710

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           I L     +V   +     KLLVVS KG     + +   A+ R G   K+ +  +    +
Sbjct: 711 IRLRPGDRLVGMDLAFEDHKLLVVSQKGYGKTTKTNNFPAHKRGGVGIKSAVVTAKTGNV 770

Query: 651 KLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             V  +  +   V ++    + +   +  IP + R  +GVR+    +G     +     +
Sbjct: 771 VAVRSLEPEASEVLIISTKGQAIRVGLQDIPTLGRTTQGVRIMRLSEGDEVASLGIIPEQ 830


>gi|84515184|ref|ZP_01002547.1| DNA topoisomerase IV subunit A [Loktanella vestfoldensis SKA53]
 gi|84511343|gb|EAQ07797.1| DNA topoisomerase IV subunit A [Loktanella vestfoldensis SKA53]
          Length = 767

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/774 (50%), Positives = 530/774 (68%), Gaps = 32/774 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  DN          +V   SLR A+ +RYL YALSTI  RA+PD RDG KPVHRRI++A
Sbjct: 1   MSDDN---ETAPGPNDVTE-SLRSAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYA 56

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MS + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGN
Sbjct: 57  MSRLRLSPTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGN 116

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+ AA RYTEARMT  AE +L+G+ EDAVDFRD Y+   +EP V P+ FPNLLANG+
Sbjct: 117 IDGDNPAASRYTEARMTAAAEALLEGLSEDAVDFRDNYDGRLTEPSVLPASFPNLLANGS 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +A L LI +P  + + LL +I+GPDFPTGG+IVE  E++ 
Sbjct: 177 SGIAVGMATNIPPHNLHELIDACLHLIKSPGAADDSLLTHILGPDFPTGGVIVEPPENMA 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG FR+RA+W VE++GRG W IVVTEIPYQVQKS+LIEK+AE+I  K++PLL D
Sbjct: 237 EAYRTGRGSFRLRAKWEVEDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPLLAD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESAEDVR+VL P+ RS+DP++LM  +F  SD+E RF LNMNVL  G  P+V  L  +
Sbjct: 297 VRDESAEDVRVVLEPRARSVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGLTPKVCSLKEV 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------- 413
           L+ +L HRR+VL RRS  R+  ID R+E+L+G +IA+L++D +I IIR +D P       
Sbjct: 357 LRAFLDHRRDVLVRRSRHRLGKIDHRLEVLEGFIIAFLHLDRVIDIIRYDDDPKSALMAE 416

Query: 414 -----------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                    +LTE Q +AILN+RLRSLR+LEE ++ +E D L A
Sbjct: 417 DWAHPHIRATSEKDYVGPKATDPEIALTEVQAEAILNMRLRSLRRLEELELIAERDALRA 476

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E++ I +LL     QW +IA E+RE ++ F +++  G RRT F  ++        +AMI+
Sbjct: 477 ERQGIMALLADEALQWARIADELRETRKQFGRTSPGGARRTQFA-LAADVAYVPIEAMID 535

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           +EPITVV S  GW+R++  H      L FK+GD+ +   HA TTD++L+   +G+ YT+ 
Sbjct: 536 REPITVVCSQMGWVRAMTGHIDLTRDLKFKDGDAARFTFHAETTDKLLVFGANGRFYTVS 595

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A NL  GRG GE ++L+IDL +  +I+   ++    KLLV S+ GN F+V E E++A TR
Sbjct: 596 AANLPGGRGMGEPLRLMIDLPNEAEIIDILIHKPGEKLLVASTDGNGFVVPEVEVVAQTR 655

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG 696
            GK  L + +    +L  ++ GDHVAVVGENRK+L+F ID++PEM+RGKGVRLQ YKDGG
Sbjct: 656 AGKQVLNLGA-STARLCKRIAGDHVAVVGENRKVLVFGIDELPEMTRGKGVRLQKYKDGG 714

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +SD   F + +GLTW+D AGR   R++++L  W+GKR   G + P+GFPR  +F
Sbjct: 715 LSDATTFTLADGLTWLDPAGR--TRTQSELDEWIGKRATAGRMAPRGFPRDNRF 766


>gi|257452985|ref|ZP_05618284.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
 gi|317059525|ref|ZP_07924010.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
 gi|313685201|gb|EFS22036.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
          Length = 811

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/757 (33%), Positives = 410/757 (54%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N+    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKK
Sbjct: 2   SNISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++   +L+ +D++ +DFR  +++   EP V PSK P+LL NG++GIAVGMAT+IP H
Sbjct: 122 RMSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ + +L LIDNPEIS  +L+EYI GPDFPTGGII   ++ I ++Y  GRG  RVR 
Sbjct: 182 NLGELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGIID-GKKGIRDAYLTGRGKIRVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G + +++ EIPYQ+ KS LIE+IA L+  K+I  + D+RDES  +   V+ 
Sbjct: 241 KVKIEENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  +++++ F + M  L    VP+V+ L  +L E+++HR +V+ R
Sbjct: 301 ELKKGEEPELVLNKLYKYTELQSTFGVIMLALV-NNVPKVLTLKQMLCEYISHRFQVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAI 431
           R+ F +    +R  IL+G  IA  NI+ II +IR+          ++ +++ TE Q  +I
Sbjct: 360 RTLFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFTEIQAKSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++++E  +L     ++  +L+   + ++ +  E+ +VK+ +     
Sbjct: 420 LDMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSHDNKIYDIMKQELLKVKDTYGD--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
             +RRT   E        L + +I+ E + +  +N+G+I+                ++ L
Sbjct: 477 --KRRTHIEE---ERMEILPEDLIKDEEMIITCTNKGYIKRIEANKYKSQNRGGKGVTGL 531

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-- 601
           +  + D +   L A   D +++ +  GK Y +    L           +   L   ++  
Sbjct: 532 NTIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLISNLLRIGEEEK 591

Query: 602 ---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
              I+   V+D   +L+ V+ +G        E       G   +K   E+ +  V  V  
Sbjct: 592 IRAIIKTRVFDKEKELVFVTKQGIVKKTSLEEFKNINTGGLIAIKFKEEDDLIYVGLVEA 651

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + V +       + F  D +    R   GV+    ++G           + +  +   
Sbjct: 652 AENEVFIATRKGFAVRFPNDNVRPTGRNTMGVKGIELREGDEVVSALLIKEKEMDILTIT 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +           RGG G +  +   ++G  +S
Sbjct: 712 ENGYGKRTRLDEYPSHNRGGKGVINLRCNDKTGNIVS 748



 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 51/145 (35%), Gaps = 5/145 (3%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           + + +  G A   P  N+     +   ++ +     ++ +    + +    +L ++  G 
Sbjct: 656 VFIATRKGFAVRFPNDNVRPTGRNTMGVKGIELREGDEVVSALLIKEKEMDILTITENGY 715

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQI 678
                  E  ++ R GK  + +   +K   +V V      + +  +  N  ++   ++ I
Sbjct: 716 GKRTRLDEYPSHNRGGKGVINLRCNDKTGNIVSVLTALDEEELVCITSNGIIIRTPMNSI 775

Query: 679 PEMSR-GKGVRLQSYKDGGISDVIC 702
              SR  +GV +           I 
Sbjct: 776 SRFSRAAQGVIIMKVALDEKVASIT 800


>gi|268678964|ref|YP_003303395.1| DNA gyrase subunit alpha [Sulfurospirillum deleyianum DSM 6946]
 gi|268616995|gb|ACZ11360.1| DNA gyrase, A subunit [Sulfurospirillum deleyianum DSM 6946]
          Length = 846

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/761 (33%), Positives = 406/761 (53%), Gaps = 19/761 (2%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DNI N+N    +++K +++  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM++
Sbjct: 2   DNIFNTN----QDIKTINIEESIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMND 57

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + +   + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQPF  R P + GQGNFG+IDG
Sbjct: 58  LAISSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQPFSMRIPTVDGQGNFGSIDG 117

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT +AE +L+ +D+D VDF   Y++   EP V PS+ PNLL NG+SGI
Sbjct: 118 DNAAAMRYTEARMTPLAEELLRDLDKDTVDFVPNYDDSMIEPDVLPSRVPNLLLNGSSGI 177

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP H + E+ +  L LIDNPE ++E+++E+I GPDFPT G I+  ++ I+E+Y
Sbjct: 178 AVGMATNIPPHCLDELLDGLLLLIDNPETTLEEIMEFIKGPDFPTSG-IIFGKKGIIEAY 236

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG  R+RA+  + E       IVV E+PYQV K RLIE+I  L+  K I  + +IRD
Sbjct: 237 RTGRGRVRIRAKTHI-EKKGNKDIIVVDELPYQVNKVRLIEQIVALVKEKMIEGISEIRD 295

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  D   ++    R    D+++ +++  ++ME  F + + +    + P++  L  +L+ 
Sbjct: 296 ESDRDGIRLVIELKREAMSDIVLNNLYKSTNMEVTFGV-ILLAIHNKEPKIFTLIELLQL 354

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +L HR+ V+ RR+ F ++    +  IL+GL IA  NIDEIIA+I+        K  ++ R
Sbjct: 355 FLRHRKTVIIRRTIFELEKAKAKAHILEGLKIALDNIDEIIALIKGSADTKSAKDGLIER 414

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q  AIL++RL+ L  LE  +I++EL  LL E +++  +L S     N I  E+ 
Sbjct: 415 FNLSEVQAGAILDMRLQRLTGLERDKIENELAELLLEIQRLSDILRSEALLNNLIKEELL 474

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           E+K+ F                     A     +       +           K      
Sbjct: 475 ELKDKFKSKRITEIVDDYDDIDVEDLIANEPMVVTITHRGYIKRVPLKQYEKQKRGGKGK 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNH 598
            A+   + D ++    + T D ++ ++  G+ Y L    +        G+A+  LI L  
Sbjct: 535 IAVTTYDDDFIESFFVSDTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLIQLQA 594

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ I+       +D T  L   +  G       SE       G   + +  ++ +     
Sbjct: 595 DEKIMAIIPTTDFDETKSLAFFTKNGVIKRTNLSEFKNIRSVGVRAITLDDDDGLVTAKI 654

Query: 656 VTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEGLTW 711
           VT +  ++ +V +    + F +    E+ R  +GV    +K+             +    
Sbjct: 655 VTQEAKNLFIVTKKGMCIRFEVGDAREIGRTARGVTGIRFKEENDCVVGAAVIYNDQEEL 714

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    +   +        L  RGG G +  K  P++   + 
Sbjct: 715 LTVTEKGIGKRTTAEEYRLQNRGGKGVIAMKLTPKTADLVG 755


>gi|326202762|ref|ZP_08192629.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782]
 gi|325986839|gb|EGD47668.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782]
          Length = 841

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/761 (29%), Positives = 391/761 (51%), Gaps = 20/761 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ + E+ +  + +   +++ ++ YA+S I +RA+PD+RDG KPVHRRI++ M   G   
Sbjct: 2   ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KS   VGE +   HPHGD +VYDSLVR+AQ F  R+PL+ G GNFG+ DGD+AAA
Sbjct: 62  DKPYRKSVATVGEALKSFHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDAAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++ +++  +L  +++D VDF+  ++E + EPVV P++FPNLL NG+SGIAVGMA
Sbjct: 122 MRYTEAKLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPARFPNLLVNGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           T+IP HN+ E  +   A++DNPEI+I++ +++YI GPDFPT   I+  +  I ++Y+ GR
Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELIMKYIKGPDFPTAAKII-GKRGIRDAYKTGR 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VR+   +EE+      IVVTEIPY V K+RL+EKIA+L+  K+I  +  I+DES  
Sbjct: 241 GRLIVRSEATIEELHGNRHRIVVTEIPYMVNKARLVEKIADLVKDKKIDGISFIQDESGR 300

Query: 308 DV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLDGILK 362
           +    ++    R  +P++++  ++  + ++  F +NM  +         P+ + L  ++ 
Sbjct: 301 EEPVRIVIDLKRDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRTLNLKQVID 360

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
            ++AH+ +V+ RR+ F +   + R  IL+GL IA  N+DE+I IIRN       K  +  
Sbjct: 361 YYIAHQEDVIRRRTKFELDKAEARAHILEGLKIALDNLDEVIRIIRNSKTESVAKEKLSE 420

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF  ++ Q  AI+++RL  L  LE  +++SE + LL + +    +L +       I  E+
Sbjct: 421 RFGFSDKQSQAIVDMRLGRLTGLEREKLESEYNELLEKIKYFRDVLANEILVHQIIKDEL 480

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
             +K  ++                       +  +       +        +S +     
Sbjct: 481 TVIKNKYADERRTKIEIDEDEIDIEDLIQEQESVITMTHFGYIKRLPADTYKSQRRGGKG 540

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  L  +E D +K      T   I+  +  G+ Y L A  +       +  AI  L+ LN
Sbjct: 541 IIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYRLKAYEIPESGRQAKGTAIVNLLQLN 600

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ + T      Y     L++ +  G     +  E  +  + G   + +   +++  V 
Sbjct: 601 GDEKVTTVIPIQEYKEGLYLVMATKNGLVKKTDLMEYDSIRKGGLAAVSLRENDELIDVK 660

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTW 711
              G+  + +   N   + F       + R  +GV+     +G    +I  ++  +  T 
Sbjct: 661 LTDGNQDIILSTVNGMAIRFKETDARPIGRVSQGVKGMELDEGD--FIIGMEVCTDNTTL 718

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +      + +        +  RGG G L  +   ++GK + 
Sbjct: 719 LVVTENGFGKRTELDEYKVQTRGGKGVLTYRITEKTGKSIG 759



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L+A+  +E D L           I+L + +G A      +        + +   ++L+ 
Sbjct: 644 GLAAVSLRENDELIDVKLTDGNQDIILSTVNGMAIRFKETDARPIGRVSQGV-KGMELDE 702

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVV 654
              I+   V      LLVV+  G     E  E    TR GK  L       + + + +++
Sbjct: 703 GDFIIGMEVCTDNTTLLVVTENGFGKRTELDEYKVQTRGGKGVLTYRITEKTGKSIGMLL 762

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
               D + ++  +  ++   +++I  + R  +GV L    +G     + 
Sbjct: 763 VSEDDDIMLISSDGTIIRMKVNEISILGRATQGVTLMRMSEGNNVVSVA 811


>gi|288802170|ref|ZP_06407610.1| DNA gyrase, A subunit [Prevotella melaninogenica D18]
 gi|288335137|gb|EFC73572.1| DNA gyrase, A subunit [Prevotella melaninogenica D18]
          Length = 847

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/760 (29%), Positives = 376/760 (49%), Gaps = 37/760 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      +KK AR+
Sbjct: 2   KINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCARV 61

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDSAAA RYTE R+++
Sbjct: 62  VGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRLSK 121

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           + E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAVGMAT+IP+HN+ E
Sbjct: 122 MGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNLGE 181

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +   A IDNPEIS + L+E+I  PDFPTG  I    + + ++Y  GRG   +RA+  +
Sbjct: 182 VIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIY-GLQGVKDAYETGRGRVVMRAKAEI 240

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E       IVVTEIPY V K +LIE IA+L+   ++  + ++ DE+      ++    R
Sbjct: 241 -ESDESHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVKR 299

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + ++++  +F ++ +++ F +N   L     P+++ L   +K ++ HR +V  RR+ F
Sbjct: 300 DANANVILNKLFKMTALQSSFSVNCIALV-AGRPRLLSLRECIKYFVEHRHDVTIRRAQF 358

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLR 435
            ++    R  IL+ L+ A  NIDE++ IIR    P     +   RF   E Q  AI+++R
Sbjct: 359 DLKKAQERAHILEALIKACDNIDEVVRIIRASKTPSEAQKNLEKRFDFDELQSKAIVDMR 418

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  L   Q+  E + L+   + +  +LN+ ++    +  E++EVKE +        R
Sbjct: 419 LSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERCKEVMKEELQEVKEKYGD-----DR 473

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKE 547
           RT              +     +P+ + IS+ G+I+              V       +E
Sbjct: 474 RTEIIPDEHE---FNAEDFYPNDPVVITISHLGYIKRTPLADFKEQARGGVGSKGARTRE 530

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D  +    A     +L  +  G+ Y +   ++  G  + +  AIQ ++ L     +   
Sbjct: 531 KDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQNMLSLEPGDSVNAF 590

Query: 606 F--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                     +  +  ++  + +G                G   + ++  +++  V    
Sbjct: 591 LRIQGLDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTNGVIAININEGDEVVDVRLTN 650

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWI 712
           G + + +   N +   F    I  M R   GVR     D G   +  +I        T +
Sbjct: 651 GHNELIIADRNGRACRFDESNIRTMGRVSTGVRGMRLDDDGQDEVVGMIVVNDPVKETVM 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   Y +        L  RGG G        ++GK ++
Sbjct: 711 VVSEEGYGKRSQVEDYRLTNRGGKGVKTLNITDKTGKLVA 750



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 94/272 (34%), Gaps = 17/272 (6%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             + +  +           +  D        +   I   +        +  D        
Sbjct: 540 ATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQNMLSL------EPGDSVNAFLRI 593

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
             +   D       +   +   V  ++       +++   + A++  EGD +      + 
Sbjct: 594 QGLDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTN--GVIAININEGDEVVDVRLTNG 651

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDS--TCKLLV 616
            + +++   +G+A      N+ +       ++ + +D +   ++V   V +      ++V
Sbjct: 652 HNELIIADRNGRACRFDESNIRTMGRVSTGVRGMRLDDDGQDEVVGMIVVNDPVKETVMV 711

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLI 672
           VS +G     +  +     R GK    ++  +K   +  +  VT D  + ++ ++  ++ 
Sbjct: 712 VSEEGYGKRSQVEDYRLTNRGGKGVKTLNITDKTGKLVAIKNVTDDNDLMIINKSGIVIR 771

Query: 673 FSIDQIPEMSRG-KGVRLQSY-KDGGISDVIC 702
            S+ +   M R  +GVRL +  K   +   +C
Sbjct: 772 MSVAECRVMGRATQGVRLINLAKKNDVIASVC 803


>gi|258647269|ref|ZP_05734738.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259]
 gi|260852920|gb|EEX72789.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259]
          Length = 850

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/759 (29%), Positives = 388/759 (51%), Gaps = 21/759 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ +  V +   ++  Y+ Y++S I  RA+PD+RDGFKPV RRI++AM  +G     A
Sbjct: 2   IDQDRIIKVDIEKEMKTSYIDYSMSVIVSRALPDVRDGFKPVQRRILYAMMNIGNTHDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR VGEV+GK HPHGD S+Y +L R+AQ +  RYPL+ GQGNFG+IDGDS AA RY
Sbjct: 62  YMKSARTVGEVLGKYHPHGDSSIYGALTRMAQDWNLRYPLVDGQGNFGSIDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RM+ + E ++  +D++ VD ++ ++++  EP V P++ PN L NG +GIAVGMAT++
Sbjct: 122 TESRMSLMGETMMLDLDKETVDMQNNFDDKLKEPTVLPTRIPNFLVNGATGIAVGMATNV 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +  +A IDNPEI +E L+E+I  PDFPTG   +   + +  +Y  G G   
Sbjct: 182 PTHNLSEVIDGCVAYIDNPEIDVEGLMEHIKAPDFPTGA-FIMGLQGVRSAYETGHGRII 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E G     IVV EIPY V K+ LI+ IA L+  KRI  + D+ DES  +   
Sbjct: 241 LRAKTEI-ENGPQHDTIVVNEIPYGVNKAELIKDIARLVNEKRIEGISDVNDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + ++L+  +F ++ +++ F +N   L     P+V+ L   ++ ++ HR EV
Sbjct: 300 IVIEVKRDANANVLLNKLFKMTALQSSFAVNCVGLVH-GRPKVLSLKDCIRTFVDHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE++ +IR    P      +  RF L + Q 
Sbjct: 359 VIRRTKYDLRKAQERAHILEGLIIASDNIDEVVRLIRASKTPAEAIEALKKRFELDDIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+++RL  L  +++ ++  E + L  + +  + +L   +     +  E+ EVKE +  
Sbjct: 419 KAIVDMRLAQLTNIQQDKLHQEYEELERKIDYYNRILTDDELCRQVMKDELNEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 + +          A  +  +       +  +     R+     V       ++ 
Sbjct: 479 VRRTEIKLSAEEFNPEDFYADDEVIITISHLGYIKRTPLAEFRAQGRGGVGSRGGTTRDA 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + +L  +  G+ Y L    L  G  + +  AIQ ++++  +  +    
Sbjct: 539 DFIEYIYPATMHNTMLFFTAKGRCYWLKVYELPEGAKNAKGRAIQNMLNIEADDSVNAFL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    ++ +  ++  +++G        E       G   + +  E+++  VV   G
Sbjct: 599 YIKKLNDPEFNKSHYVVFCTAEGIIKKTCLEEYSRPRTNGVKAITIREEDRVVSVVLTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI---SDVICFKICEGLTWID 713
            D + +   N + + F+ D +  M R   GVR     + G      ++C    E  T + 
Sbjct: 659 QDELVIANRNGRAIRFNEDAVRTMGRVSTGVRGIRLDEDGEDQAVGMVCINDPEKETIMV 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + + +           RGG G    +   ++GK  +
Sbjct: 719 VSDQGFGKRSAIEDYRKTNRGGKGVKTLQLTDKTGKVAA 757


>gi|148553035|ref|YP_001260617.1| DNA topoisomerase IV subunit A [Sphingomonas wittichii RW1]
 gi|148498225|gb|ABQ66479.1| DNA topoisomerase IV subunit A [Sphingomonas wittichii RW1]
          Length = 750

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/749 (49%), Positives = 517/749 (69%), Gaps = 5/749 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++   L E++V+      AL +RYL YALSTI  R++PD+RDG KPVHRR++ AM  + 
Sbjct: 1   MTDIAELPEDSVRNTPFDSALSDRYLVYALSTITARSLPDVRDGLKPVHRRLLWAMRLLR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD  + +KK AR+VG+VIGK HPHGDQSVYD++VRLAQ F  RYPL+ GQGNFGN+DGD+
Sbjct: 61  LDPASGYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQTFSLRYPLVDGQGNFGNVDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T  A  ++ G+DE  VDFR TYN E+ EP +FP  FPNLLANG SGIAV
Sbjct: 121 AAAMRYTEARLTAAAGELMAGLDEGTVDFRPTYNGEEEEPEIFPGLFPNLLANGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HNV E+ +AA+ LID PE    +LL+++ GPDFPTGG++V+S  +I E+Y  
Sbjct: 181 GMATSIPPHNVAELIDAAVLLIDKPEAETAELLDHVKGPDFPTGGVLVDSPATIAEAYAT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FRVRA+    +   G W +VV++IPYQVQKS+LIE+IAELI  K++P+L D+RDES
Sbjct: 241 GRGAFRVRAKIEKVDEKGGGWHLVVSQIPYQVQKSKLIEQIAELINDKKLPILADVRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            E++RIVL P++R++D D+LMES+F L+++E R  LN+NVL   R P VM L   L  WL
Sbjct: 301 DEEIRIVLEPRSRTVDADMLMESLFRLTELEVRVSLNLNVLDDTRTPLVMSLKQALAAWL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            H+ EVL RRS  R+  I  R+E+L G LI YLN+D +I IIR ED+PKPVM++ F LT+
Sbjct: 361 KHQFEVLIRRSQHRLAKIADRIELLDGYLIVYLNLDRVIQIIREEDEPKPVMMAEFGLTD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLR+LEE ++  E   L AE +++++L+ S  +Q  ++  ++  ++E 
Sbjct: 421 RQAEAILNMRLRSLRRLEEMELTRERATLDAEGKELEALIASPARQRTRMKRDLAALRER 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--L 543
           +   T LG RRT   E + A +    +AM+E+EP+TV++S RGWIR++K H  + +   +
Sbjct: 481 YGPETALGARRTLLSEAAPA-REIPLEAMVEREPVTVILSQRGWIRAMKGHLDEAAQAAV 539

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FKEGD    A+ A TTDRILL +  G+ YTLPA  L  GRG GE ++L  D++ +  + 
Sbjct: 540 KFKEGDGPAHAIRAQTTDRILLATDQGRFYTLPADKLPGGRGFGEPVRLFADIDADARVA 599

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHV 661
                    +LL+ S  G  F+V+ +++ A TRKGK  + +    ++K+V  V  T D+V
Sbjct: 600 ALLAAKPGAELLLASGDGKGFVVDMADVTAETRKGKQVVNLREGGRLKVVHPVAPTDDYV 659

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           A +G+NRK++IF + ++P M+RG+GV +Q YKDGG+SD I F++ +GL+W         R
Sbjct: 660 AAIGDNRKMVIFPLGELPRMARGQGVTIQRYKDGGLSDAISFRLDDGLSWTMGGDTGRTR 719

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +E DL  W   RG  G + P GFPR  +F
Sbjct: 720 TEADLTPWRAARGAAGRMPPVGFPRDNRF 748


>gi|319936689|ref|ZP_08011102.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1]
 gi|319808246|gb|EFW04811.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1]
          Length = 822

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/764 (31%), Positives = 413/764 (54%), Gaps = 35/764 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +K   L   +++ +++YA+S I +RA+PD+RDG KPV RRI+H M+E+G      
Sbjct: 1   MEQRGIKKRLLTEEMKKSFISYAMSVIVQRALPDVRDGLKPVQRRIVHGMNELGCYSDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD S+Y++LVR+AQ F  RY ++ G GNFG+IDGD AAA RY
Sbjct: 61  YKKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMIVDGHGNFGSIDGDGAAAARY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  +++ +++D V+F   Y+ E++EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKISMELVRDINKDTVNFIPNYDGEETEPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN+ E+ +A LA+  NP+I+I + + +YI GPDFPTG  I+  + +I ++Y  G G  
Sbjct: 181 PPHNLGEVIDAILAVSHNPDITIMELMEDYIQGPDFPTGAYIL-GKSAIKKAYETGNGLI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  + ++  G   I+V EIPY V K+RLIEK+AE +  KRI  + +IRDES  +  
Sbjct: 240 IMRAKTDIIDIHGGKKAIIVNEIPYMVNKARLIEKMAEHVKEKRIEGITEIRDESNREGI 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + + P++++  +F L+ ++T F +N   L     PQ + L  ++  +L H+ E
Sbjct: 300 RIVIELRKDVQPEVILNQLFKLTSLQTTFGVNTIALV-NNEPQTLNLKQMITYYLDHQEE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+++ ++  + R  IL+GL  A   ID II +IR        +  ++S F ++E Q
Sbjct: 359 VIKRRTAYDLKKAEDRAHILEGLKRALDQIDAIIDLIRTSRTTEIIQQRLMSEFDMSERQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI  ++L+ L  LE  +I++EL++LL     +  +L + ++    I  E+ ++K+ F+
Sbjct: 419 AKAIREMQLQRLAGLEREKIENELNDLLTLIADLKDILENRERILAIIEAELLQLKDKFA 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                 +RRT   +          + +I  E I + ++  G+++ +   +          
Sbjct: 479 D-----KRRTEIIQ---GTFDLEDEDLIPVEDIIISLTTNGYVKRMPVDTYKTQNRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +   E D +   ++  T D +L  +  GK Y +   N+       +   +  L++L+
Sbjct: 531 IKGMATNEDDIVDSLINMSTHDDLLFFTNFGKVYRIKGYNVPEFGRTAKGLPVVNLLNLD 590

Query: 598 HNQDIVTAFVYDSTC-------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            ++ + +                L  V+  G        E     + GK  + +  ++++
Sbjct: 591 KDEYVKSMISIRKEDILEKKAEYLFFVTLNGLVKKTHIDEFENIRQSGKIAIGLKEDDQL 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V   TG+  + V   N KL+ F    + +M R   GVR  +   G +  +      EG
Sbjct: 651 VSVKLTTGNAQILVAASNGKLIRFKESDVRKMGRTASGVRGINVDGGHVIGMTT--DQEG 708

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  +   Y +           RGG G        ++G+ ++
Sbjct: 709 QFIMAISENGYGKMSPLDDYRESHRGGKGVKTINTTAKTGQLVA 752



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 8/190 (4%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                           A+  KE D L          +IL+ +++GK       ++     
Sbjct: 625 KTHIDEFENIRQSGKIAIGLKEDDQLVSVKLTTGNAQILVAASNGKLIRFKESDVRKMGR 684

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
               ++ +        ++          ++ +S  G   +    +   + R GK    ++
Sbjct: 685 TASGVRGINV--DGGHVIGMTTDQEGQFIMAISENGYGKMSPLDDYRESHRGGKGVKTIN 742

Query: 646 SEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISD 699
           +  K   +  +  V GD  + ++     ++   +DQ+    R  +GVRL    +G  +S 
Sbjct: 743 TTAKTGQLVALRAVNGDEDLLIITSEGIVIRLPMDQVKTAGRNTQGVRLIKVAEGSTVSS 802

Query: 700 VICFKICEGL 709
           V   +  E  
Sbjct: 803 VEVVEKAEED 812


>gi|259416258|ref|ZP_05740178.1| DNA topoisomerase IV, A subunit [Silicibacter sp. TrichCH4B]
 gi|259347697|gb|EEW59474.1| DNA topoisomerase IV, A subunit [Silicibacter sp. TrichCH4B]
          Length = 782

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/781 (49%), Positives = 520/781 (66%), Gaps = 37/781 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           VD+ +         ++   LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM+
Sbjct: 5   VDDPTTPEMPANGELRE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMN 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 64  RLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNID 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT +AE +L+G+ EDAVDFRD Y+    EP V P+ FPN+LANG+SG
Sbjct: 124 GDNPAASRYTEARMTFIAEAMLEGLGEDAVDFRDNYDGRLQEPSVLPATFPNILANGSSG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A + LI  P  + + LL+Y+ GPDFPTGG IVE +E+I ++
Sbjct: 184 IAVGMATNIPPHNISELIDACIHLIKAPNAADDTLLQYVPGPDFPTGGTIVEPKENIAQA 243

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG FR+RA+  +E++GRG W +VVTEIPYQVQKS+LIEKIAELI  K++P+L D+R
Sbjct: 244 YRTGRGSFRLRAKHEIEDLGRGQWQVVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVR 303

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESAED+RI+L PK++++DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+
Sbjct: 304 DESAEDIRIILEPKSKNVDPEVLMGLMYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLR 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            +L HRR+VL RRS  RM  ID R+E+L G +IA+LN+D +I IIR +D PK  ++    
Sbjct: 364 AFLDHRRDVLQRRSRHRMAKIDHRLEVLDGFIIAFLNLDRVIDIIRYDDDPKAALMRENW 423

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L+E Q +AILN+RLRSLRKLEE ++  E D L  E+  
Sbjct: 424 DREHPRAFTEAEYVTPAAGDGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAG 483

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL+S   QW +I  ++RE K+ F K  + G RRT F E +   +    +AMI++EPI
Sbjct: 484 LAELLDSEDLQWKKITEQLRETKKQFGKDYEGGSRRTQFAE-AGEVEDVPLEAMIDREPI 542

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+  ++G+ YTL A NL
Sbjct: 543 TVVCSQMGWIRAMTGHIDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANL 602

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L++DL +  +IV  F+++   +LLV S  GN F+  E EI+A TR GK 
Sbjct: 603 PGGRGMGEPLRLMVDLPNEVEIVDLFIHNPEGRLLVASDAGNGFVCAEKEIVAQTRGGKQ 662

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------- 693
            L V  +E+ K+ + V+GDHVAVV EN K L+FSI+++PE++RGKGVRLQ Y        
Sbjct: 663 VLNVKDDERAKICIPVSGDHVAVVSENGKFLVFSIEEMPELTRGKGVRLQKYNMARGRQG 722

Query: 694 ----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               DGG++DV  F   EGL W    G    R E DL  WLGKR GVG   P GFP+  K
Sbjct: 723 SLELDGGLADVTTFNWDEGLQW--EMGGGKTRHETDLSQWLGKRAGVGKRPPYGFPKDYK 780

Query: 750 F 750
           F
Sbjct: 781 F 781


>gi|170742439|ref|YP_001771094.1| DNA topoisomerase IV subunit A [Methylobacterium sp. 4-46]
 gi|168196713|gb|ACA18660.1| DNA topoisomerase IV, A subunit [Methylobacterium sp. 4-46]
          Length = 748

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/742 (55%), Positives = 539/742 (72%), Gaps = 1/742 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                 + ++ V L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI++AM  + LD 
Sbjct: 6   EPPSDRDGIENVELKTALEERYLAYALSTIMHRALPDARDGLKPVHRRILYAMRMLRLDP 65

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           G A KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F QRYPL+ GQGNFGNIDGD+ AA
Sbjct: 66  GTAHKKCARVVGDVIGKYHPHGDTAVYDALVRLAQDFAQRYPLVDGQGNFGNIDGDNPAA 125

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RMT+VA L+L G++EDAVDFR  Y+ ++ EPVV P+ FPNLLANG  GIAVGMA
Sbjct: 126 QRYTECRMTEVARLLLDGMEEDAVDFRPNYDGQEEEPVVLPAAFPNLLANGAQGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HN  E+C+AAL LI +P  +  +L  ++ GPDFPTGG++++S E+I E+YR GRG
Sbjct: 186 TSIPPHNAAELCDAALYLITHPTATSAQLTSFVKGPDFPTGGVVIDSAEAIAEAYRTGRG 245

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            FRVRARW  E++GRG W +VVTEIPY V K+RLIEK+AEL+  K++PLL D+RDESAED
Sbjct: 246 AFRVRARWTREDLGRGLWQVVVTEIPYGVPKARLIEKMAELLTEKKLPLLADVRDESAED 305

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           VRIVL P++R++DP +LMES+F L+++E+RF LNMNVL  G+VP+V+ L  +L+EWL HR
Sbjct: 306 VRIVLEPRSRTVDPVVLMESLFRLTELESRFSLNMNVLMSGQVPRVVGLAEVLREWLDHR 365

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R VL RRS  R+  I+RR+EIL GLLI YL++D++I IIR ED+PK  ++  F LTE Q 
Sbjct: 366 RTVLQRRSRHRLGQIERRLEILGGLLIVYLDLDQVIRIIREEDEPKAELMRHFQLTEVQA 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL+ RLRSLRKLEE ++K E   L AEK  +D+LL+S   QW  IA ++R VK+ F  
Sbjct: 426 NAILDTRLRSLRKLEEMELKREQAALTAEKADLDALLDSEPLQWKSIAGQVRAVKKTFGP 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
            T LGRRRTT           L +AMIE+EPITV++S +GWIR+LK H  DLS + FK  
Sbjct: 486 ETALGRRRTTLENPPDTSDLDLAEAMIEREPITVIVSQKGWIRALKGHVADLSTVQFKGD 545

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+LK++    TT ++L+L+T+GK +TL A  L  GRG G+ I+L+ DL+   DIVT F +
Sbjct: 546 DALKLSFPTETTAKLLVLATNGKVFTLDAAKLPGGRGFGDPIRLMADLDEGSDIVTVFPF 605

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGEN 667
            +  KLL  +S G  F      ++ANTRKGK  + +     +   V+   GDHVAV GEN
Sbjct: 606 RAGAKLLFGTSDGRGFTTLADGLVANTRKGKQVVALDGAATVTHCVEAGAGDHVAVCGEN 665

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           R L++F + +IP+M+RGKGVRLQ Y++  ++ +  F++ EGL+W DSAGR+      +L 
Sbjct: 666 RLLVVFPLTEIPDMARGKGVRLQRYRESTLAYLSVFRLAEGLSWPDSAGRTRTVVGEELA 725

Query: 728 GWLGKRGGVGSLVPKGFPRSGK 749
            W+G RG VG++ P+GFPRS +
Sbjct: 726 KWVGHRGTVGAMAPRGFPRSNR 747


>gi|262066873|ref|ZP_06026485.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693]
 gi|291379424|gb|EFE86942.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693]
          Length = 812

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/758 (33%), Positives = 410/758 (54%), Gaps = 30/758 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKK
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDN +I I +L+ YI GPDFPTG II   R  I+E+Y+ GRG  +VR 
Sbjct: 182 NLGELVDGILALIDNKDIEILELMNYIKGPDFPTGAIID-GRAGIIEAYKTGRGKIKVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   V+ 
Sbjct: 241 KVDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRVVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ R
Sbjct: 301 EVKKGEEPELVLNKLYKYTDLQTTFGVIMLSLV-NNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ ++  T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   + A  +++  +L+   + +  +  E+ E+K+ ++    
Sbjct: 420 LDMKLQRLTGLEREKIDNEYKEIEALIKELREVLSDNSKIYEIMKKELLELKDKYND--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
             +RRT   E        L + +I+ E I +  +N+G+++          +     +SAL
Sbjct: 477 --KRRTQIEE---ERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSAL 531

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI--QLLIDLNHNQD 601
           +  E D  +  + A T D +++ +  GK Y + A  +              +I+L+  + 
Sbjct: 532 NTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEK 591

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +    V   +    +++ ++  G        E       G   +K+  ++ +  V  +  
Sbjct: 592 VSDTIVIKEFLPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKIKEDDDIIFVGLIED 651

Query: 659 ---DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
              + + +   +     F  D I    R  +GV+  + ++G                +  
Sbjct: 652 VTKEEILIATHDGYCTRFLTDTIRPTGRSTQGVKAITLREGDAVVSAMLIKNPETDILTI 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +  +        RGG G +  K   ++GK +S
Sbjct: 712 TENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVS 749



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 5/141 (3%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + DG         +       + ++ +     +  +    + +    +L ++  G     
Sbjct: 661 THDGYCTRFLTDTIRPTGRSTQGVKAITLREGDAVVSAMLIKNPETDILTITENGYGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
              E     R GK  + + + E   K+  V++VT D  +  +  N  ++  SI +I  + 
Sbjct: 721 SLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVTEDEELMCITSNGIVIRTSISEISRIG 780

Query: 683 RG-KGVRLQSYKDGGISDVIC 702
           R  +GVR+    D      I 
Sbjct: 781 RATQGVRIMKVADEEKVAAIT 801


>gi|94676657|ref|YP_588831.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219807|gb|ABF13966.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 847

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/782 (33%), Positives = 397/782 (50%), Gaps = 48/782 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G D+   +KKSA
Sbjct: 11  LIPVSIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMSILGNDWNKPYKKSA 70

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPH D +VYD++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 71  RIVGDVIGKYHPHSDTAVYDAIVRMAQTFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 130

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D V++   Y+  +  P V P++ PN+L NG+SGIAVGMAT+IP HN+
Sbjct: 131 SKIAHELLIDLEKDTVNYVPNYDSTEQIPEVMPTRMPNILINGSSGIAVGMATNIPPHNL 190

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI +  LA ID+ +ISIE+L++YI GPDFPT   I+  ++ I E+YR GRG   +RAR 
Sbjct: 191 FEIIDGCLAYIDDDKISIEELMKYIPGPDFPTAA-IINGKQGIEEAYRTGRGKICIRARA 249

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE E   G   IVV+EIPYQV K+RLIEKIA+LI  KRI  +  +RDES +D   ++  
Sbjct: 250 IVEVEANTGREIIVVSEIPYQVNKARLIEKIADLIKEKRIEGISVLRDESDKDGMRIIIG 309

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ ++ ++  F +NM  L+    P++  L  IL  ++ HR++++ RR
Sbjct: 310 IKRDAVAEVVLNNLYSMTQLQVSFSINMVALN-NGQPKIFSLKEILSAFICHRQDIITRR 368

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------------- 415
           + F ++    RV IL+ L++A  NI+ II + RN + P                      
Sbjct: 369 TIFELRKARERVHILEALVVAQANIESIITLTRNANTPVEAKDKLLISAWNLGTIASMQC 428

Query: 416 -----------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                            +   R+ LTE QV AIL+LRL +L  LE  ++  E   LL + 
Sbjct: 429 REVHHMVRPEWLEEKYGIHDGRYYLTEKQVQAILDLRLYNLTSLEYSKLMIEHKELLTKI 488

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +LN  ++    I  E+  +++ +           +   V           +    
Sbjct: 489 VDLLRILNEPERLMEVIREELNYIQKQYKDPRRTEITTISSNLVIEDMINKENVVVTLSY 548

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V         + K      SA+  KE D +   L A+T D ILL S+ G+ Y +   
Sbjct: 549 QGYVKYQPLNDYDAQKRGGKGKSAVKMKEEDFIHSLLVANTHDTILLFSSRGRMYWMKVY 608

Query: 579 NLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            L   S    G  I  L+ L  N+ I T      Y+  C + + ++ G            
Sbjct: 609 QLPAASRGSRGRPIVNLLPLETNERITTILPVRQYEEGCNVFMATASGTVKKTALIAFSR 668

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
               G   + +   +++  V    G + V +     K++ F   Q+  M R   GVR  +
Sbjct: 669 PRSAGIIAVNLHEGDELIGVNVTNGNNEVMLFSAYGKVVRFPETQVRSMGRTATGVRGIN 728

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +G     +     +G   +      Y +           R   G +  K   R+G+ +
Sbjct: 729 LAEGDRVVSLIIPNIDG-HILTVTQHGYGKRTTQNEYPTKSRATQGVISIKASERNGQVI 787

Query: 752 SS 753
            +
Sbjct: 788 GA 789


>gi|34580944|ref|ZP_00142424.1| topoisomerase IV subunit A [Rickettsia sibirica 246]
 gi|28262329|gb|EAA25833.1| topoisomerase IV subunit A [Rickettsia sibirica 246]
          Length = 738

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/739 (50%), Positives = 526/739 (71%), Gaps = 4/739 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  V+ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTDICTLLMKDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LI++P   I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  R
Sbjct: 181 PPHNLHELCDALIHLINHPTAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLR LRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRLLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVTLTNQVVDITAFIIKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           KRG  G L P GFP++ +F
Sbjct: 717 KRGSTGKLPPMGFPKNNRF 735


>gi|67458499|ref|YP_246123.1| DNA topoisomerase IV subunit A [Rickettsia felis URRWXCal2]
 gi|75537034|sp|Q4UNA0|PARC_RICFE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|67004032|gb|AAY60958.1| Topoisomerase IV subunit A [Rickettsia felis URRWXCal2]
          Length = 737

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/739 (50%), Positives = 532/739 (71%), Gaps = 4/739 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT++  L++  +++D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTEICTLLMVDIEKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LID+P+  I  ++ +I GPDFPTGGII++  E I  +Y  GRG FR
Sbjct: 181 PPHNLHELCDALVHLIDHPKAEISDMMNFIKGPDFPTGGIIIDKAELINAAYSTGRGSFR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 MRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  +L+E+LAHR+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKAVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  + A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    V+ S 
Sbjct: 541 KFIIEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVHKSD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSIGKGFLVNSNEVMAQTKTGKQIMNVPDGHTCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL+W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLSW---NNNGKVKLEKNIIAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           KRG  G L P GF ++ +F
Sbjct: 717 KRGSTGKLPPMGFHKNNRF 735


>gi|296268005|ref|YP_003650637.1| DNA gyrase subunit A [Thermobispora bispora DSM 43833]
 gi|296090792|gb|ADG86744.1| DNA gyrase, A subunit [Thermobispora bispora DSM 43833]
          Length = 834

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/776 (31%), Positives = 391/776 (50%), Gaps = 38/776 (4%)

Query: 6   ISNSNTLV---EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++  NT      + ++ + L+  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 1   MTEVNTPPGPPADRIEVIDLQAEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAMF 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G      + KS+RIVG+V+G  HPHGD S+YD++VRLAQP+  RYPL+ GQGNFG+  
Sbjct: 61  EGGYRPDRGYFKSSRIVGDVMGSYHPHGDASIYDTVVRLAQPWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE+RM  +A  +L+ +D+D VDF+  Y+    EPVV PS+FPNLL NG+SG
Sbjct: 121 NDPAAAMRYTESRMAPIAMEMLRDIDKDTVDFQPNYDGRSREPVVLPSRFPNLLVNGSSG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E  EA    +++PE+S E+    L+E I GPDFPTG  ++  R  
Sbjct: 181 IAVGMATNIPPHNLRETGEAVQWALEHPELSDEELLEGLIERIKGPDFPTGA-LIVGRRG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I E+YR GRG   +RA   +EE  +G  C+VVTE+PY V    L   IAEL+   +I  +
Sbjct: 240 IEEAYRTGRGSIIMRAVVELEEDAKGRQCLVVTELPYMVNPDNLALTIAELVREGKISGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            D+RDE S+   + ++    R   P +++ +++  + ++T F  NM  L    VP+ + L
Sbjct: 300 ADVRDESSSRTGQRLVIVLKRDAVPKVVLNNLYKHTQLQTTFGANMIALVD-GVPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
           D  ++ ++ H+ +V+ RR+ F ++  + R  IL+GLL A   IDE+I +IR         
Sbjct: 359 DQFVRHYIRHQIDVVVRRTRFLLRKAEERAHILRGLLKALERIDEVIELIRRSPSATEAQ 418

Query: 418 VSRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                   + E Q  AIL+++LR L  LE  QI+ E D L+A+    + +L S  +Q   
Sbjct: 419 TGLMALLEIDEVQAQAILDMQLRKLAALERQQIQDEYDGLMAQIADYNDILGSEMRQRRL 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           ++ E+ E+   +        RRT             ++ +I +E + V I+  G+ +   
Sbjct: 479 VSEELGEIIAKYGDE-----RRTKITAYEGDMS---EEDLIAEEDVVVTITRGGYAKRTS 530

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
                  +     +     ++ D ++      T   +L  +  G+ Y   A  L      
Sbjct: 531 IDAYRAQRRGGKGVRGAQLRQDDIVEHFFVTSTHHWLLAFTNKGRVYRFKAYELPEAARD 590

Query: 587 GEAIQLLIDL-----NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                L   L      H  +I++   YD    L++ +  G       +E  +    G   
Sbjct: 591 ARGQHLANLLAMQPDEHVMEILSLRNYDEAPYLVLATRSGMVKKTRLAEYDSPRSGGLIA 650

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGI 697
           + +  ++++     V   D + +V +N + + F      +  M R   GV    + +G  
Sbjct: 651 INLRDDDEVIAARLVSEEDDLLLVSKNAQAIRFKATDEVLRPMGRATAGVIGMRFAEGDE 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +          + +    Y +        +  RGG G L  K     GK + +
Sbjct: 711 LLAMEVIRDGDEEVLVATEGGYAKRTPADQYPVQGRGGKGVLTAKIVQSRGKLIGA 766



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 67/202 (33%), Gaps = 11/202 (5%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR 584
                      S  L A++ ++ D +  A      D +LL+S + +A    A + +    
Sbjct: 634 KTRLAEYDSPRSGGLIAINLRDDDEVIAARLVSEEDDLLLVSKNAQAIRFKATDEVLRPM 693

Query: 585 GHGEAIQLLIDLNHNQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G   A  + +      +++    + D   ++LV +  G A      +     R GK  L 
Sbjct: 694 GRATAGVIGMRFAEGDELLAMEVIRDGDEEVLVATEGGYAKRTPADQYPVQGRGGKGVLT 753

Query: 644 VS---SEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
                S  K+   + V   D V  +  N  ++     +I    R   GVRL    +G   
Sbjct: 754 AKIVQSRGKLIGAIMVRPEDEVFAITSNGGVIRTRAAEIKRSGRQTMGVRLMHLSEGD-- 811

Query: 699 DVICFKICEGLTWIDSAGRSYN 720
                 +      +++      
Sbjct: 812 --SLVALARNAESLNNEENGAG 831


>gi|118467811|ref|YP_884429.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|1346234|sp|P48354|GYRA_MYCS2 RecName: Full=DNA gyrase subunit A
 gi|1122892|emb|CAA63918.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|118169098|gb|ABK69994.1| DNA gyrase, A subunit [Mycobacterium smegmatis str. MC2 155]
          Length = 842

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/769 (28%), Positives = 380/769 (49%), Gaps = 24/769 (3%)

Query: 6   ISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    E    + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM
Sbjct: 1   MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+ 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ 
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN+ E+ EA    ++N     E + E ++E + GPDFPT G ++   +
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSG-LIVGTQ 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y+ GRG  ++R    +EE  RG   IV+TE+PYQV     I  IAE +   ++  
Sbjct: 240 GIEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAG 299

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + 
Sbjct: 300 ISNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLR 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--- 413
           LD +++ ++ H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR        
Sbjct: 359 LDQLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIA 418

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++    + + Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q  
Sbjct: 419 RAGLIELLDIDDIQAQAILDMQLRRLAALERQKIVDDLAKIEAEIADLEDILAKPERQRG 478

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            +  E++E+ +    +                  A     +   E      +     RS 
Sbjct: 479 IVRDELKEIVDKHGDARRTRIVPADGEVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQ 538

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQ 591
           K     +     K+ D +       T D IL  +T G+ Y   A  L        G+ + 
Sbjct: 539 KRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVA 598

Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+     + I        Y+    L++ +  G     + S+  +N   G   + +   +
Sbjct: 599 NLLAFQPEERIAQVIQIKSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIVAINLREGD 658

Query: 649 KMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFK 704
           ++   V  +  D + +V  N + + FS     +  M R   GV+   + +      +   
Sbjct: 659 ELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNEDDRLLSLNVV 718

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + +    Y +  +     +  RGG G L  +   + G  + +
Sbjct: 719 RPD-TYLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYDRKRGSLVGA 766



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ +  G ++  K    D +        + +EGD L  A+     D +LL+S 
Sbjct: 618 YEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSA 677

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           +G++    A +      G   +    +  N +  +++  V      LLV +S G A    
Sbjct: 678 NGQSIRFSATDEALRPMGRATSGVQGMRFNEDDRLLSLNVVRPDTYLLVATSGGYAKRTS 737

Query: 628 ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
             E     R GK  L +        +   + V  D  +  +     ++  +  Q+ +  R
Sbjct: 738 IDEYSVQGRGGKGILTIQYDRKRGSLVGALIVDDDTELYAITSTGGVIRTAARQVRKAGR 797

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             KGVRL +  +G     I     E       + 
Sbjct: 798 QTKGVRLMNLAEGDTLIAIARNADEDEAAESISE 831


>gi|294083969|ref|YP_003550726.1| type IIA topoisomerase ,subunit A [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663541|gb|ADE38642.1| Type IIA topoisomerase , A subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 900

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/774 (29%), Positives = 374/774 (48%), Gaps = 42/774 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   + + YL YA+S I  RA+PD+RDG KPVHRRI++AM E   D+    +KSARIV
Sbjct: 20  ISISDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMMEGNYDWTKPPRKSARIV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G  HPHGD S+Y+++VR+AQ F  R PL+ GQGNFG++DGD AAA RYTE+R+ + 
Sbjct: 80  GDVMGNYHPHGDSSIYEAMVRMAQDFSMRLPLVDGQGNFGSVDGDPAAAMRYTESRLARA 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D++ V+F   Y+E   EP V P+++PNLL NG +GIAVGMAT+IP HN  E+
Sbjct: 140 AESLLRDIDKNTVEFAQNYDETQLEPTVLPAEYPNLLVNGANGIAVGMATNIPPHNPGEV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A  A ++NPEI+ E+L E + GPDFPTG  ++  R  I E+YR GRG   +RAR  V+
Sbjct: 200 IAACEAYVNNPEITTEELTEIVPGPDFPTGA-LIMGRHGIREAYRTGRGSIIMRARAEVQ 258

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
              +    I+V EIPYQV K++L+E+I E++  K +  + DIRDES      ++    R 
Sbjct: 259 TNAKDRESIIVHEIPYQVNKAQLLERIGEMVRDKVLEGISDIRDESDRTGMRIVIEVKRD 318

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              D+++  ++  + ++T FP+NM  ++    P  M L  +++ +   R++V+ +R++F 
Sbjct: 319 AAGDVVLNKLYRHTRLQTSFPVNMLAMN-AGRPIQMGLKDVIEAFCEFRKDVVIKRTTFL 377

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------------------- 413
           +     R  IL GL++A  +IDEII +I+                               
Sbjct: 378 LNKSRDRAHILAGLMVALASIDEIIELIKKAPDTETARNELCATAWPAHEVGAFIALIDD 437

Query: 414 --KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
               V+   ++L+E Q  AIL LRL+ L  +E  ++ +E   L  +      +L S  + 
Sbjct: 438 PGHAVVDDHYTLSEVQARAILELRLQRLTGMERDKLAAETQELADKIADYLDILGSDTRV 497

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I  E+   +E  S             +            +       +        R
Sbjct: 498 SQVILDELAATRERLSDDRRTEITDQLADQDDEDLIQQEDMVVTVSHRGYIKRVPLSIYR 557

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EA 589
           + +      + +  ++ D +      +T   IL  ++ G  Y L    L         +A
Sbjct: 558 AQRRGGKGRAGMKTRDEDFVTRLFVTNTHTPILFFTSKGMVYQLKCYKLPESAPQSLGKA 617

Query: 590 IQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           +  L+ +   + I T               ++  ++ GN      S+     R GK  +K
Sbjct: 618 MVNLLPIEPEETINTVMPMPDDESSWGDLNVMFATASGNVRRNNLSDFTNIKRNGKIAMK 677

Query: 644 VSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQS-YKDGGISD 699
           +   +++  V+     D V +   N K + F+ + +     R   GVR         +  
Sbjct: 678 MQDGDELVGVIPCNDDDDVLMATRNGKAIRFAANAVRVFRGRDSTGVRGIKLLGKDRVVS 737

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      E    +      Y +           RGG G    +  PR+G+ ++S
Sbjct: 738 MSIIADPENEYILSVTENGYGKRTPIKDYRQSGRGGQGVANIEISPRNGQVMAS 791



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 70/503 (13%), Positives = 149/503 (29%), Gaps = 32/503 (6%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G  I    + ++E++   R    ++    +    R    I+       V  + + E I  
Sbjct: 348 GRPIQMGLKDVIEAFCEFRKDVVIKRTTFLLNKSRDRAHILA---GLMVALASIDEIIEL 404

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP-DLLMESIFMLSDMETRFPLNMNVLS 347
           +  A       +    +A     V        DP   +++  + LS+++ R  L + +  
Sbjct: 405 IKKAPDTETARNELCATAWPAHEVGAFIALIDDPGHAVVDDHYTLSEVQARAILELRLQR 464

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
           +  + +        +        +    S  R+  +           ++     EI   +
Sbjct: 465 LTGMERDKLAAETQELADKIADYLDILGSDTRVSQVILDELAATRERLSDDRRTEITDQL 524

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
            ++D    +      +T +    I  + L   R                E       + +
Sbjct: 525 ADQDDEDLIQQEDMVVTVSHRGYIKRVPLSIYRAQRRGGKGRAGMKTRDEDFVTRLFVTN 584

Query: 468 GKQQWNQ-----IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT- 521
                       +  +++  K   S    LG+       +   +       M + E    
Sbjct: 585 THTPILFFTSKGMVYQLKCYKLPESAPQSLGKAMVNLLPIEPEETINTVMPMPDDESSWG 644

Query: 522 ----VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
               +  +  G +R                A+  ++GD L   +  +  D +L+ + +GK
Sbjct: 645 DLNVMFATASGNVRRNNLSDFTNIKRNGKIAMKMQDGDELVGVIPCNDDDDVLMATRNGK 704

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA--FVYDSTCKLLVVSSKGNAFIVEES 629
           A    A  +   RG        I L     +V+           +L V+  G        
Sbjct: 705 AIRFAANAVRVFRGRDSTGVRGIKLLGKDRVVSMSIIADPENEYILSVTENGYGKRTPIK 764

Query: 630 EIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSI-----DQIPE 680
           +   + R G+    +     + + M     V  D + +V    +++   +     D I  
Sbjct: 765 DYRQSGRGGQGVANIEISPRNGQVMASFTVVEEDQLMLVTNQGQIIRIRVHGGEGDSIRI 824

Query: 681 MSRGK-GVRLQSYKDGGISDVIC 702
            SR   GVRL    D     V+ 
Sbjct: 825 ASRKTLGVRLFDVADDNDEKVVS 847


>gi|24379546|ref|NP_721501.1| DNA gyrase subunit A [Streptococcus mutans UA159]
 gi|24377489|gb|AAN58807.1|AE014948_10 DNA gyrase A subunit [Streptococcus mutans UA159]
          Length = 825

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 399/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 6   MQDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 66  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 125

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 126 TEARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNI 185

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++   L+E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 186 PPHNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGA-LVMGKSGIHRAYDTGKGSIV 244

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +E+   G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 245 LRARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +    VP+++ L  IL  ++ H++EV
Sbjct: 305 FIIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEK-GVPKILSLRQILDNYIDHQKEV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+I IIRN +     +  ++SRF L+E Q 
Sbjct: 364 IVRRTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSRFDLSERQS 423

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  E+ ++K  F+ 
Sbjct: 424 QAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVITIIKDELEDIKRKFAD 483

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 484 -----QRRTEL--MVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLGQDEFRTQKRGGRGV 536

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L    +       +   I  L+ L+ 
Sbjct: 537 QGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDD 596

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T     S       L   + +G       S      + G   L +   +++  V+
Sbjct: 597 GETIQTIINVKSDDFHDKYLFFTTRQGVVKRTSVSAFGNIRQNGLKALSLRDNDELINVL 656

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G + + +       + F    +  M R   GV+  + +      +    I +    +
Sbjct: 657 LTNGQEDIIIGTHLGYSVRFQESAVRNMGRLATGVKGVNLRKNDYV-IGADHIADSRNVL 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 716 TITEKGYGKQTPASEYPTKGRGGKGIKTANITAKNGPLAG 755



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 5/119 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           ++L  N  ++ A     +  +L ++ KG       SE     R GK      +   +   
Sbjct: 694 VNLRKNDYVIGADHIADSRNVLTITEKGYGKQTPASEYPTKGRGGKGIKTANITAKNGPL 753

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             LV     + + ++ +   ++  S+  I +  R   GV++    +            E
Sbjct: 754 AGLVTVNDDEDIMIITDTGVIIRTSVADISQTGRSAMGVKVMRLDENAKIVTFALVKSE 812


>gi|290580453|ref|YP_003484845.1| DNA gyrase A subunit [Streptococcus mutans NN2025]
 gi|254997352|dbj|BAH87953.1| DNA gyrase A subunit [Streptococcus mutans NN2025]
          Length = 825

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 398/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 6   MQDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 66  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 125

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 126 TEARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNI 185

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A    +DNP+++   L+E + GPDFPTG  +V  +  I  +Y  G+G   
Sbjct: 186 PPHNLGETIDAVKLAMDNPDVTTRDLMEVLPGPDFPTGA-LVMGKSGIHRAYDTGKGSIV 244

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +E+   G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 245 LRARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +    VP+++ L  IL  ++ H++EV
Sbjct: 305 FIIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEK-GVPKILSLRQILDNYIDHQKEV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+I IIRN +     +  ++SRF L+E Q 
Sbjct: 364 IVRRTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSRFDLSERQS 423

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  E+ ++K  F+ 
Sbjct: 424 QAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVITIIKDELEDIKRKFAD 483

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT    +     +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 484 -----QRRTEL--MVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLGQDEFRTQKRGGRGV 536

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L    +       +   I  L+ L+ 
Sbjct: 537 QGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDD 596

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T     S       L   + +G       S      + G   L +   +++  V+
Sbjct: 597 GETIQTIINVKSDDFHDKYLFFTTRQGVVKRTSVSAFGNIRQNGLKALSLRDNDELINVL 656

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G + + +       + F    +  M R   GV+  + +      +    I +    +
Sbjct: 657 LTNGQEDIIIGTHLGYSVRFQESAVRNMGRLATGVKGVNLRKNDYV-IGADHIADNRNVL 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 716 TITEKGYGKQTPASEYPTKGRGGKGIKTANITAKNGPLAG 755



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 5/119 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           ++L  N  ++ A        +L ++ KG       SE     R GK      +   +   
Sbjct: 694 VNLRKNDYVIGADHIADNRNVLTITEKGYGKQTPASEYPTKGRGGKGIKTANITAKNGPL 753

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             LV     + + ++ +   ++  S+  I +  R   GV++    +            E
Sbjct: 754 AGLVTVNDDEDIMIITDTGVIIRTSVADISQTGRSAMGVKVMRLDENAKIVTFALVKSE 812


>gi|73749403|ref|YP_308642.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1]
 gi|147670012|ref|YP_001214830.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1]
 gi|289433361|ref|YP_003463234.1| DNA gyrase subunit alpha [Dehalococcoides sp. GT]
 gi|73661119|emb|CAI83726.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1]
 gi|146270960|gb|ABQ17952.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1]
 gi|288947081|gb|ADC74778.1| DNA gyrase, A subunit [Dehalococcoides sp. GT]
          Length = 809

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/755 (31%), Positives = 392/755 (51%), Gaps = 18/755 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V  N + +++   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM+++G+     
Sbjct: 1   MVTGNTRPINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVYD++VR+AQPF  RYPL+ GQGNFG++D D AAA RY
Sbjct: 61  YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ Q+AE +L  +D++ VDF   ++    EP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 121 TEARLAQIAEHLLADIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A   LIDNP+  +++L++++ GPDFPTGG I+   + I  +Y  G+G   
Sbjct: 181 PPHNLAELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTIL-GTDGIKSAYATGKGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           ++A+  + EV      I VTEIPYQV K+ L+ KIAEL+  +++  + D+RDES      
Sbjct: 240 IQAKAHIGEV-ETRKAIFVTEIPYQVNKAELVAKIAELVKERKVTGISDLRDESDRQGMR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  +P  ++ S++  ++M T F +NM  L     PQV+ L  +LK ++  R  +
Sbjct: 299 VVIELKRDAEPQQVLNSLYKHTNMRTSFFVNMLALVD-GQPQVLSLKEVLKNFIDFRHLI 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS F ++A   R  IL+GL  A   ID IIAIIR  +       +    F  +  Q 
Sbjct: 358 ITRRSQFELKAAKDRAHILEGLKKALDFIDRIIAIIRGSENGDAARKNLIAEFDFSVVQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+L+LR L  LE  +I  E   L+     ++ LL+  ++ +  +  + +++K  + +
Sbjct: 418 QAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLKSSYGQ 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKE 547
                       E    D       ++       +      +          +  +  +E
Sbjct: 478 PRATEISNQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTGIMGMPTRE 537

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH---GEAIQLLIDLNHNQDIVT 604
            D+++    + T D +L  +  GK ++L   ++         G AI  LI +  ++ I  
Sbjct: 538 ADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDSSRIAKGTAIVNLIPVTQDERITA 597

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDH 660
                 + +   LL+ ++KG        E  A    G   + +++ +++   V+      
Sbjct: 598 ILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLTASDELVAAVETIEEKD 657

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRS 718
           + +     + + F + ++    R   GV+          +V+   +  EG   I      
Sbjct: 658 ILLATRLGQSIRFPVSELRTSLRASGGVKAIVLSMED--EVVSMDVAQEGTMVITVTENG 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +           R G G +  K   ++G+ ++S
Sbjct: 716 AGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVAS 750



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 67/225 (29%), Gaps = 16/225 (7%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 R T   ++              K  I                S  L A+     
Sbjct: 588 PVTQDERITAILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVR----SSGLIAMDLTAS 643

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L  A+       ILL +  G++   P   L +           I L+   ++V+  V 
Sbjct: 644 DELVAAVETIEEKDILLATRLGQSIRFPVSELRTSLRAS-GGVKAIVLSMEDEVVSMDVA 702

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVV 664
                ++ V+  G   +    E     R G   +       + E +   V    D + ++
Sbjct: 703 QEGTMVITVTENGAGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVASKVVSVTDQMMLI 762

Query: 665 GENRKLLIFSIDQ------IPEMSRG-KGVRLQSYKDGGISDVIC 702
             +  +    + +      IP M R  +GVR+   ++G     + 
Sbjct: 763 SADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAVA 807


>gi|15790025|ref|NP_279849.1| DNA gyrase subunit A [Halobacterium sp. NRC-1]
 gi|169235748|ref|YP_001688948.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium
           salinarum R1]
 gi|10580453|gb|AAG19329.1| DNA gyrase subunit A [Halobacterium sp. NRC-1]
 gi|167726814|emb|CAP13600.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium
           salinarum R1]
          Length = 824

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/774 (31%), Positives = 398/774 (51%), Gaps = 35/774 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  ++  +    V + VK V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MSSES-PDVPDDVADRVKNVRVDEEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G+  G+  +KS+ IVG+ +G  HPHGD  +YD+LVR+AQ F  RYPL+ GQGNFG+
Sbjct: 60  MHESGVTSGSGHRKSSNIVGDTMGDYHPHGDSPIYDALVRMAQDFSMRYPLVDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM  +AE +L  +++D V F+  Y++  +EP V PS FPNLL NG+
Sbjct: 120 VDGDPAAAMRYTEARMAPIAEELLTDIEKDTVAFQANYDDRLTEPAVLPSSFPNLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGM+T++P HN+ E+ +A + LID P+ ++  L+EY+ GPDFPT   IV  R  + 
Sbjct: 180 SGIAVGMSTNVPPHNLGEVIDATIHLIDTPDCTVLDLMEYVKGPDFPTAANIV-GRADVK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y+ GRG  R+RA + V E       IV+TE+PYQ  KS L+E+IA+ +   ++  + D
Sbjct: 239 QAYQTGRGRVRMRAEYHV-ESNGRRDSIVITELPYQQNKSTLVERIADDVRDGKLEGITD 297

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   ++    +  + D++  +  + S +E  F +    L     P+V+ L  +
Sbjct: 298 LRDESDRNGVRIVIDLKQKANTDVVE-NRLLESHLEKTFSVINLALVD-GEPKVLTLKEL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVM 417
           L E+++HR+EV+ RRS   +   + R  IL G L A  N DE++ +I++ +        +
Sbjct: 356 LAEYVSHRKEVVRRRSEHDLGEAEDRAHILDGRLTALENADEVVELIQDAEDRDAAKETL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            S F  +++Q D I+ ++L SL  +E   I+SE +++ A  E+++ +L S ++  + I  
Sbjct: 416 KSAFDFSQDQADHIVRMQLGSLTSMEAADIESEYEDVTARIERLEEILGSEQELLDVIKD 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+RE+K  ++       RRT+F E          + +I +E   VV+S   +I+      
Sbjct: 476 ELREIKTQYADE-----RRTSFIE---DTGTVADEDLIPEEDTVVVLSEGDYIKRVPAET 527

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HG 587
                     +     K+GD +     A T D +L  +  G+ Y L    +        G
Sbjct: 528 FDAQHRGGKGIIGSDLKDGDRVSTVFTASTHDYLLCFTDQGQVYRLKVYQVPEMSRTARG 587

Query: 588 EAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            +   ++DL+  ++I      D          L + +  G        E       G   
Sbjct: 588 TSAVNILDLDDGEEISAVVTADDLDFKADDEYLTMATRNGYVKRTSVGEFGNILSTGIIA 647

Query: 642 LKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-IS 698
           + +   + +  V    G H V +  E    + F    +  M R  +GVR         I+
Sbjct: 648 IDLEDGDALADVEVTDGSHDVILGSEAGMAIRFDEGDVRAMGRNARGVRGMDLDAADRIA 707

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            V   +  +  + +      Y +           R G G +  K   R+G  +S
Sbjct: 708 GVAAVESEDDRSLLTVTEFGYGKRTRVGEYRSQSRNGKGLVDIKTGDRNGDVVS 761



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 594 IDLNHNQDI--VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-- 649
           +DL+    I  V A   +    LL V+  G        E  + +R GK  + + + ++  
Sbjct: 698 MDLDAADRIAGVAAVESEDDRSLLTVTEFGYGKRTRVGEYRSQSRNGKGLVDIKTGDRNG 757

Query: 650 -MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
            +  V  V  D  + V+  + +++   +D+I  + R  KGV + +   G     +  +  
Sbjct: 758 DVVSVDAVGDDDSLVVMSADGQIIQMPVDEISTVGRNTKGVNIMAVGSGDEVAGVSVRAA 817

Query: 707 E 707
           +
Sbjct: 818 D 818


>gi|219870281|ref|YP_002474656.1| DNA gyrase subunit A [Haemophilus parasuis SH0165]
 gi|219690485|gb|ACL31708.1| DNA gyrase subunit A [Haemophilus parasuis SH0165]
          Length = 888

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/820 (30%), Positives = 387/820 (47%), Gaps = 79/820 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  +S+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M + G     
Sbjct: 2   SELAKDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT   I+  R+ I ++YR GRG  
Sbjct: 182 IPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAA-IINGRKGIEDAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  +  I D S +   
Sbjct: 241 YVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  I++ ++ HRRE
Sbjct: 301 SIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDH-GQPKIFNLKQIIEAFVMHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IRN                     
Sbjct: 360 VVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V   ++ L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPEDLASEFGVRDGQYYLSEVQARAILELRLHRLTGLEHEKIVDEYKE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +LNS ++    I  E+ ++K  F           +         A     
Sbjct: 480 LLVEISELLHILNSSERLMEVIREELEKIKAEFGDERRTEITAASGDINLEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSCGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKGENERITAILPVPNGEFSADKFIFMATASGTVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+   +  M R
Sbjct: 660 KVSLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVRGMGR 719

Query: 684 -GKGVRLQSY-------KDGGISD---------------------VICFKICEGL-TWID 713
              GVR            D    D                     V+   I       + 
Sbjct: 720 VATGVRGIKLATTEISVDDAEEVDIETVENEEAEEASSVNLTTDKVVSLVIPHTQGEILT 779

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                Y +        +  R   G +  K   R+GK +++
Sbjct: 780 VTQNGYGKRTALGEYPVKSRATKGVVSIKVNERNGKVVAA 819



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 8/126 (6%)

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVV 654
              +V+  +  +  ++L V+  G        E    +R  K  + +   E+    +  V 
Sbjct: 762 TDKVVSLVIPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERNGKVVAAVQ 821

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKICEGLT 710
               D + ++ +   L+   ++++  + R  +GVR+    +         IC    +G+ 
Sbjct: 822 VEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIEDDGIE 881

Query: 711 WIDSAG 716
            +    
Sbjct: 882 NLSVEE 887


>gi|146300339|ref|YP_001194930.1| DNA gyrase, A subunit [Flavobacterium johnsoniae UW101]
 gi|146154757|gb|ABQ05611.1| DNA gyrase subunit A [Flavobacterium johnsoniae UW101]
          Length = 879

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/763 (30%), Positives = 399/763 (52%), Gaps = 28/763 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVTSRSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E I+  ++++ VDF+  +++   EP V P++ P LL NG +GIAVGMAT++P H
Sbjct: 125 RMRKISEEIMADIEKETVDFQLNFDDTIYEPKVMPTRVPTLLVNGATGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA +DN +I +++L+ +I  PDFPTGG I+   E + E+++ GRG   +RA
Sbjct: 185 NLTEVINGTLAYLDNNDIEVDELMTHIKAPDFPTGG-IIYGYEGVREAFKTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV  G   I+VTEIPYQV K+ +I++ A+L+  K+I  + +IRDES  +   +++
Sbjct: 244 KVGFEEV-EGRESIIVTEIPYQVNKAEMIKRTADLVNEKKIEGIANIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L     PQ++ L  ++  ++ HR +V+ R
Sbjct: 303 ILKRDATPNVVLNTLYKYTQLQSSFSVNNIALVK-GRPQLLNLKDMIHYFIEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IA+IR              RF L++ Q  AI
Sbjct: 362 RTQFELRKAEERAHILEGLIIASDNIDEVIALIRGSKNTDEAREKLIERFKLSDIQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D L+   E + +LL     + + I  E+ E+++ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDELMKLIEHLKALLADVNLRIDLIKEELTEIRDKYGDDRR 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                +          A     +       +  +N    ++     V   +   ++ D L
Sbjct: 482 SQIEYSGGDVSIEDLIADENVVITISHAGYIKRTNLSEYKTQNRGGVGQKSAGTRDQDFL 541

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV-- 607
           +    A     ++  +  GK + +    +  G    +  AIQ LI++  +  +       
Sbjct: 542 EHMFVATNHQYMMFFTQKGKCFWMRVYEIPEGSKTAKGRAIQNLINIESDDKVKAFICTQ 601

Query: 608 ------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                 Y +T  L++V+ +G        +       G   + +   +++       G+  
Sbjct: 602 DLKDKDYINTHNLVMVTKQGQVKKTSLEKYSKPRANGVAAITIKEGDELLEAKLTDGESQ 661

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL----TWIDSA 715
           + +  ++ KL+ F   +   M R   GVR  + KD     +    + +        +   
Sbjct: 662 IILAVKSGKLVRFEETKTRPMGRTASGVRGITLKDDTDEVIGMVTVGKNDVADSQILVVT 721

Query: 716 GRSYNRSENDLL------GWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +    +         +  RGG G        ++GK +S
Sbjct: 722 ENGYGKRTKLVDDDGEDVYRITNRGGKGVKTLNITDKTGKLIS 764



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 43/120 (35%), Gaps = 11/120 (9%)

Query: 610 STCKLLVVSSKGNAFIVEESE------IIANTRKGKTFLKVSSEEK---MKLV-VKVTGD 659
           +  ++LVV+  G     +  +           R GK    ++  +K   +  +      D
Sbjct: 713 ADSQILVVTENGYGKRTKLVDDDGEDVYRITNRGGKGVKTLNITDKTGKLISINAVTDSD 772

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + ++ ++   +  +I+ +  M R  +GVRL + K       +   + +    +      
Sbjct: 773 DLMIINKSGLTIRMAIEDLRVMGRATQGVRLINLKGKDSIAAVTKVMKDDAEEVVVDEDG 832


>gi|238855511|ref|ZP_04645816.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3]
 gi|260665215|ref|ZP_05866064.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282931537|ref|ZP_06337036.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|313472768|ref|ZP_07813256.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153]
 gi|238831877|gb|EEQ24209.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3]
 gi|260560952|gb|EEX26927.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281304344|gb|EFA96447.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|313448867|gb|EFR61216.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153]
          Length = 825

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/762 (30%), Positives = 387/762 (50%), Gaps = 28/762 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+  
Sbjct: 2   DNQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY LI G GNFG++DGD  AA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM+++A  +L+ ++++ +D++  Y++ ++EP+V P++ P+LL NG SGIAVGM 
Sbjct: 122 MRYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMT 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+      L+ NP+ +   L++ I GPDFPTGG ++  R  I+ +Y  G+G
Sbjct: 182 TNIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGG-VIMGRSGILHAYESGKG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +EE   G   I+VTEIP+ V K+ L++KIAEL   K I  +  +RDES   
Sbjct: 241 NVVVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R     +++ ++F  + M+T F +NM  +     P  + L  +L+ +L H+
Sbjct: 301 GMRITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIV-NGAPHFLTLKQMLQYYLDHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTE 425
            +V+ RR+ F +   + R  IL+GL IA  +IDEI+ IIRN          ++SRF L +
Sbjct: 360 EDVVRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSQSSDIAKATLISRFELDD 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  LE  +++ E  +LL +      +L   ++  + I  E+ ++++ 
Sbjct: 420 KQAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADYKDILAKPERIDHIIYTELLDIQKR 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
           F        RRT     +    +   + +IEK+ + + +++ G+I+ +            
Sbjct: 480 FGD-----DRRTEIT--ASEVVSIEDEDLIEKQNVLLTLTHNGYIKRMPVSEFRTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID 595
             +  +  ++ D ++   ++ T D +L  +  GK Y+  A  +       +   I  L+ 
Sbjct: 533 RGIKGMGVQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEIPEYSRIAKGLPIINLLQ 592

Query: 596 LNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L+  + I              L  ++  G        E       G   L +   +++  
Sbjct: 593 LDKGEKIQAMINVPEGHEEGNLFFITKMGVVKRTSVEEFSNIRNSGLIALTLRDGDELSN 652

Query: 653 VVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+   G   + +         F    +  M R   GVR  + ++     +    +  G  
Sbjct: 653 VLTTDGKQNIIIGTHLGYAASFKESDVRVMGRSAAGVRGINLRENDYV-IGSEVLKPGAE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +   Y +        +  RGG G L  K   ++G+   
Sbjct: 712 VLVISENGYGKRTAVSEYPIKGRGGKGILTTKVGKKNGRLAG 753



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 81/245 (33%), Gaps = 13/245 (5%)

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
           ++++IA  +  +  +     +  +      E            M   +  +V        
Sbjct: 577 EYSRIAKGLPIINLLQLDKGEKIQAMINVPEGHEEGNLFFITKMGVVKRTSV-------E 629

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                 +  L AL  ++GD L   L       I++ +  G A +    ++        A 
Sbjct: 630 EFSNIRNSGLIALTLRDGDELSNVLTTDGKQNIIIGTHLGYAASFKESDVRVMGRSA-AG 688

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SE 647
              I+L  N  ++ + V     ++LV+S  G       SE     R GK  L        
Sbjct: 689 VRGINLRENDYVIGSEVLKPGAEVLVISENGYGKRTAVSEYPIKGRGGKGILTTKVGKKN 748

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
            ++  +  V G   + ++  +  ++ F  + + +  R   GVRL    +G     +    
Sbjct: 749 GRLAGMTVVDGTTDIMLITTDGIMIRFKTEDVSQTGRATMGVRLIKLGEGDSVASLTAVP 808

Query: 706 CEGLT 710
            +   
Sbjct: 809 NDDDD 813


>gi|294781816|ref|ZP_06747149.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294481926|gb|EFG29694.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 812

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/758 (33%), Positives = 408/758 (53%), Gaps = 30/758 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKK
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDN +I I +L+ YI GPDFPTG II   R  I+E+Y+ GRG  +VR 
Sbjct: 182 NLGELVDGILALIDNKDIEILELMNYIKGPDFPTGAIID-GRAGIIEAYKTGRGKIKVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   ++ 
Sbjct: 241 KVDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  +D++  F + M  L    VP+V+ L  +L E++ HR +V+ R
Sbjct: 301 EVKKGEEPELVLNKLYKFTDLQNTFGVIMLSLV-NNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ ++  T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   + A  +++  +L    + +  +  E+ E+KE ++    
Sbjct: 420 LDMKLQRLTGLEREKIDNEYKEIEALIKELREVLADNSKIYEIMKKELLEIKEKYND--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
             +RRT   E        L + +I+ E I +  +N+G+++          +     +SAL
Sbjct: 477 --KRRTQIEE---ERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSAL 531

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI--QLLIDLNHNQD 601
           +  E D  +  + A T D +++ +  GK Y + A  +              +I+L+  + 
Sbjct: 532 NTIEDDYAEKIISASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEK 591

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +    V   +    +++ ++  G        E       G   +K+  ++ +  V  +  
Sbjct: 592 VSDTIVIKEFLPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKIKEDDDIIFVGLIED 651

Query: 659 ---DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
              + + +   +     F  D I    R  +GV+  + ++G                +  
Sbjct: 652 VTKEEILIATHDGYCTRFLTDTIRPTGRSTQGVKAITLREGDAVVSAMLIKNPETDILTI 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +  +        RGG G +  K   ++GK +S
Sbjct: 712 TENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVS 749



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 5/141 (3%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + DG         +       + ++ +     +  +    + +    +L ++  G     
Sbjct: 661 THDGYCTRFLTDTIRPTGRSTQGVKAITLREGDAVVSAMLIKNPETDILTITENGYGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
              E     R GK  + + + E   K+  V++VT D  +  +  N  ++  SI +I  + 
Sbjct: 721 SLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVTEDEELMCITSNGIVIRTSISEISRIG 780

Query: 683 RG-KGVRLQSYKDGGISDVIC 702
           R  +GVR+    D      I 
Sbjct: 781 RATQGVRIMKVADEEKVAAIT 801



 Score = 45.9 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  L        +V+        +L+ ++S G   
Sbjct: 710 TITENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVTEDEELMCITSNGIVI 769

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLV 653
               SEI    R   G   +KV+ EEK+  +
Sbjct: 770 RTSISEISRIGRATQGVRIMKVADEEKVAAI 800


>gi|229586309|ref|YP_002844810.1| DNA topoisomerase IV subunit A [Rickettsia africae ESF-5]
 gi|228021359|gb|ACP53067.1| Topoisomerase IV subunit A [Rickettsia africae ESF-5]
          Length = 738

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/739 (50%), Positives = 527/739 (71%), Gaps = 4/739 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  V+ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTDICTLLMEDIDKDTVDFRPTYDGADLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LI++P+  I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  R
Sbjct: 181 PPHNLHELCDALIHLINHPKAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED PK +M+ RF LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDAPKAIMMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           KRG  G L P GFP++ +F
Sbjct: 717 KRGSTGKLPPMGFPKNNRF 735


>gi|86609072|ref|YP_477834.1| DNA gyrase subunit A [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557614|gb|ABD02571.1| DNA gyrase, A subunit [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 842

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/777 (28%), Positives = 379/777 (48%), Gaps = 34/777 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++ +     + +  L+  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MSDNESTA--RIISTDLQREMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     F+K AR+VG+VIGK HPHGDQ+VYD+LVR+AQ F  R  L+ G GNFG++D D 
Sbjct: 59  LTADRPFRKCARVVGDVIGKYHPHGDQAVYDALVRMAQDFSMRERLVDGHGNFGSVDNDP 118

Query: 126 AAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE R+T  A+  +LQ +D + VDF   Y+    EP+V P++ P LL NG+SGIA
Sbjct: 119 PAAMRYTECRLTAFAQEALLQDIDANTVDFVGNYDGSQQEPLVLPARIPQLLLNGSSGIA 178

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALI NP ++  +L+++I  PDFPTG  ++  +E I E+Y 
Sbjct: 179 VGMATNIPPHNLSELVDGLIALIHNPNLTSLELMQWIPAPDFPTGA-LIMGQEGIREAYT 237

Query: 245 LGRGGFRVRARWCVEEVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            GR    +R    VE + +        I++TE+PYQ  K+ +IEKIAEL+  K++  + D
Sbjct: 238 TGRSSITLRGVARVETIEQRGRPVRDAIIITELPYQTNKAAMIEKIAELVNEKKLEGIAD 297

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES      V+    R   P +++ +++  + ++  F +   +  +   P+ + L   
Sbjct: 298 IRDESDRSGMRVVIELKRDAQPQVVLNNLYKQTPLQANFGV-NMLAILNGEPRTLTLRDA 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L+ +L  R EV+ RR+ + +Q  + R  +L+G L+A   +D +IA+IR        +  +
Sbjct: 357 LQAFLDFREEVIERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADTATAREEL 416

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            +   L+E Q D IL ++LR L  LE  +I++E ++L+ +   +  +L   ++    I+ 
Sbjct: 417 QAVLGLSEAQADGILQMQLRRLTALEAEKIQAEHEDLVRQIADLRDILARRERVMQIISE 476

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E++++K  F+               +       +  +   E   +        +     +
Sbjct: 477 ELQQLKARFASPRRSRLCLEDGELGTDDLIENRETVIFLTEQGYIKRMGLEEFQVQGRAT 536

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID 595
              +    KE D+++      + D IL  +  G  YTLPA  +  G       AI  L+ 
Sbjct: 537 RGKAGARIKEDDAIEQFFACRSHDTILFFTNRGVVYTLPAHQIPQGSRAARGSAIVQLLP 596

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +   + + +      +     L++++  G       S        G   + +   ++++ 
Sbjct: 597 ITREERVTSMVPVSQFSDDEYLVMLTRGGYIKKTALSAFANVRSNGLIAISLEENDELRW 656

Query: 653 VVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
           V +  + D V +       + F  D   +  + R  +GVR  +   G     +     E 
Sbjct: 657 VRRARSSDDVVMATRQGMSIRFPADDEQLRPLGRATRGVRAITLNAGDDIVSMDIISAES 716

Query: 709 LT-------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +               +        +           RGG G +  K    S +  +
Sbjct: 717 VMAAEREGEKLANPWVLVITKEGRGKRSAIDNFRQQNRGGKGVIATKFRQASDELAA 773


>gi|86133996|ref|ZP_01052578.1| DNA gyrase subunit A [Polaribacter sp. MED152]
 gi|85820859|gb|EAQ42006.1| DNA gyrase subunit A [Polaribacter sp. MED152]
          Length = 838

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/763 (30%), Positives = 403/763 (52%), Gaps = 37/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+    A+KK
Sbjct: 5   EKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIKATGAYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY ++ GQGNFG++DGDS AA RYTE 
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDSMVRMAQDWSVRYMMVDGQGNFGSVDGDSPAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +++D VD    +++   EPVV P++ PNLL NG SGIAVGMAT++  H
Sbjct: 125 RMQKISEEMLADIEKDTVDHSLNFDDTLQEPVVLPTRIPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +A I+N +I I++L++++  PDFPTGG I+   + + +++  GRG   +RA
Sbjct: 185 NLTEVINGTVAYIENRDIEIDELMQHVTAPDFPTGG-IIYGYDGVRDAFHTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV  G  CI+VTEIPYQV K+ +I+K A+L+  K+I  + +IRDES  +   +++
Sbjct: 244 KAVIEEVK-GRECIIVTEIPYQVNKADMIKKTADLVNEKKISGIANIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  +F  + ++T F +N   L     P+ + L  ++  ++ HR EV+ R
Sbjct: 303 VLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALV-NGRPEQLNLKQLIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+I IIR            + RF LTE Q  AI
Sbjct: 362 RTEYELKKAEARAHILEGLIIASDNIDEVIKIIRASSNADEARASLIERFELTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D ++     +  +L +  +++  I  E+  +KE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEFDEIMVTIADLKDILANEPRRYQIIKDELLHIKEKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RR+T      A      + MI    + V ISN G+++                    
Sbjct: 480 ---RRSTI---EYAGGDMRIEDMIPDTKVVVTISNAGYLKRTNLDEYKVQNRGGRGQKGA 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             +  D L+          ++  +  GK + +    +  G  + +  A+Q LI++  +  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGKNTKGRAMQNLINIEQDDS 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +    V        Y ++  +++ + KG        +       G   + +   +++   
Sbjct: 594 VKAFLVTQDLKNEEYINSHYVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEGDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGL 709
              TGD  V +   + K + F   +   M R   GVR  +   ++  +  ++     E  
Sbjct: 654 KLTTGDSQVMLALASGKSIRFEEAKTRPMGRTASGVRGITLQHENDEVIGMVAVNDMES- 712

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +  +     +  RGG G        ++G  ++
Sbjct: 713 NILVVSEKGYGKRSSLEDYRITNRGGKGVKTLNISEKTGNLVA 755



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 77/207 (37%), Gaps = 6/207 (2%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           ++   +       ++  +   V  ++       +++ ++   +   +   L+  L    +
Sbjct: 602 DLKNEEYINSHYVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEGDEL-LEAKLTTGDS 660

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L L++        A     GR       + +   +++ I    V D    +LVVS K
Sbjct: 661 QVMLALASGKSIRFEEAKTRPMGRTASGVRGITLQHENDEVIGMVAVNDMESNILVVSEK 720

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSID 676
           G        +     R GK    ++  EK   +  +  V   + + ++ ++  ++  +++
Sbjct: 721 GYGKRSSLEDYRITNRGGKGVKTLNISEKTGNLVAIKNVDDSNDLMIINKSGLVIRMAVE 780

Query: 677 QIPEMSRG-KGVRLQSYKDGGISDVIC 702
            +  M R  +GVRL + KD      + 
Sbjct: 781 DLRVMGRATQGVRLINIKDDDSIAAVA 807



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 53/432 (12%), Positives = 124/432 (28%), Gaps = 17/432 (3%)

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
           I+ S  +      +RA    +E          +TEI  +      + ++  L   K    
Sbjct: 381 IIASDNIDEVIKIIRASSNADEARASLIERFELTEIQAKAIVEMRLRQLTGLEQDKLRAE 440

Query: 298 LEDIR-DESAEDVRIVLFPKNRSL--DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
            ++I    +     +   P+   +  D  L ++  +      T      ++     +P  
Sbjct: 441 FDEIMVTIADLKDILANEPRRYQIIKDELLHIKEKYGDERRSTIEYAGGDMRIEDMIPDT 500

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             +  I       R  +   +   R     +         + +L +      +    +  
Sbjct: 501 KVVVTISNAGYLKRTNLDEYKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKG 560

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL--AEKEKIDSLLNSGKQQW 472
            V   R               +++L  +E+               +E I+S       + 
Sbjct: 561 KVFWMRVYEIPEGGKNTKGRAMQNLINIEQDDSVKAFLVTQDLKNEEYINSHYVIMATKK 620

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSR----ADKATLQQAMIEKEPITVVISNRG 528
            Q+     E    +S+    G    T  E              Q M+       +     
Sbjct: 621 GQVKKTSLE---QYSRPRTNGINAITIKEGDELLEAKLTTGDSQVMLALASGKSIRFEEA 677

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHA--HTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
             R +   +  +  +  +  +   I + A       IL++S  G        +       
Sbjct: 678 KTRPMGRTASGVRGITLQHENDEVIGMVAVNDMESNILVVSEKGYGKRSSLEDYRITNRG 737

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G+ ++ L       ++V     D +  L++++  G    +   ++    R   G   + +
Sbjct: 738 GKGVKTLNISEKTGNLVAIKNVDDSNDLMIINKSGLVIRMAVEDLRVMGRATQGVRLINI 797

Query: 645 SSEEKMKLVVKV 656
             ++ +  V KV
Sbjct: 798 KDDDSIAAVAKV 809


>gi|256851679|ref|ZP_05557067.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260661604|ref|ZP_05862516.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282934237|ref|ZP_06339514.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|297205288|ref|ZP_06922684.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
 gi|256615637|gb|EEU20826.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260547661|gb|EEX23639.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281301711|gb|EFA93978.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|297149866|gb|EFH30163.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
          Length = 825

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/762 (30%), Positives = 387/762 (50%), Gaps = 28/762 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+  
Sbjct: 2   DNQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY LI G GNFG++DGD  AA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM+++A  +L+ ++++ +D++  Y++ ++EP+V P++ P+LL NG SGIAVGM 
Sbjct: 122 MRYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMT 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+      L+ NP+ +   L++ I GPDFPTGG ++  R  I+ +Y  G+G
Sbjct: 182 TNIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGG-VIMGRSGILHAYESGKG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +EE   G   I+VTEIP+ V K+ L++KIAEL   K I  +  +RDES   
Sbjct: 241 NVVVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R     +++ ++F  + M+T F +NM  +     P  + L  +L+ +L H+
Sbjct: 301 GMRITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIV-NGAPHFLTLKQMLQYYLDHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTE 425
            +V+ RR+ F +   + R  IL+GL IA  +IDEI+ IIRN +        ++SRF L +
Sbjct: 360 EDVVRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSESSDIAKATLISRFELDD 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  LE  +++ E  +LL +      +L   ++  + I  E+ ++++ 
Sbjct: 420 KQAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADYKDILAKPERIDHIIYTELLDIQKR 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
           F        RRT     +    +   + +IEK+ + + +++ G+I+ +            
Sbjct: 480 FGD-----DRRTEIT--ASEVVSIEDEDLIEKQNVLLTLTHNGYIKRMPVSEFRTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID 595
             +  +  ++ D ++   ++ T D +L  +  GK Y+  A  +       +   I  L+ 
Sbjct: 533 RGIKGMGVQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEIPEYSRTAKGLPIINLLQ 592

Query: 596 LNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L+  + I              L  ++  G        E       G   L +   +++  
Sbjct: 593 LDKGEKIQAMINVPEGHEDGNLFFITKMGVVKRTSVEEFSNIRNSGLIALTLRDGDELSN 652

Query: 653 VVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+   G   + +         F    +  M R   GVR  + ++     V    +  G  
Sbjct: 653 VLTTDGKQNIIIGTHMGYAASFKESDVRVMGRSAAGVRGINLRENDYV-VGSEVLKPGAE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +   Y +        +  RGG G L  K   ++G    
Sbjct: 712 VLVISENGYGKRTAVSEYPIKGRGGKGILTTKLGKKNGPLAG 753



 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 6/155 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 I++ +  G A +    ++        A    I+L  N  +V + V     ++LV
Sbjct: 656 TDGKQNIIIGTHMGYAASFKESDVRVMGRSA-AGVRGINLRENDYVVGSEVLKPGAEVLV 714

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLI 672
           +S  G       SE     R GK  L     +K   +  +  V G   + ++  +  ++ 
Sbjct: 715 ISENGYGKRTAVSEYPIKGRGGKGILTTKLGKKNGPLAGMTVVDGTTDIMLITTDGIMIR 774

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
           F  + + +  R   GVRL    +G     +     
Sbjct: 775 FKTEDVSQTGRATMGVRLIKLGEGDSVASLTAVPN 809


>gi|261839476|gb|ACX99241.1| DNA gyrase subunit A [Helicobacter pylori 52]
          Length = 827

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/766 (33%), Positives = 414/766 (54%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +++    +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+MT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEAKMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHKIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEVAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE FS       RRT   E   + +    + +I  EP+ V +S +G+++           
Sbjct: 478 KEQFSSP-----RRTEIQE---SYENIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  +    E D ++    A+T D +L ++  G+ Y L    +        G+A+  
Sbjct: 530 RGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  ++ I+       +     L   +  G       SE  +N   G   + +   ++
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSCGIRAIVLDEGDE 649

Query: 650 MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +     V  +  H+ +       + F ++ + EM R  +GV      +            
Sbjct: 650 LVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVISD 709

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +  +     +           RGG G +  K   ++G  + 
Sbjct: 710 DGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVG 755



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 6/162 (3%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G     P  ++     +   +  +    ++  +    + D   KLL VS  G
Sbjct: 662 HLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVISDDGNKLLSVSENG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSID 676
                        +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI 
Sbjct: 722 LGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVGVISVDDENLDLMILTASAKMIRVSIK 781

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            I E  R   GV+L +  D  +    C K  E      S+ +
Sbjct: 782 DIRETGRNASGVKLINTADKVMYVNSCPKEEEPENLETSSAQ 823


>gi|227506178|ref|ZP_03936227.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC
           6940]
 gi|227197202|gb|EEI77250.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC
           6940]
          Length = 856

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/773 (30%), Positives = 387/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ N  + + ++ + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDQNGDLFDRIQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   L+DNPE S E+     +E + GPDFPT G ++   + I +
Sbjct: 181 GMATNIPPHNLNELAEAIYWLLDNPEASDEEALAACMERVKGPDFPTAG-LIVGDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+PYQV    +I  IAE +   +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEESG-NRQTIVITELPYQVNPDNMISNIAESVANGKIAGIAKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ +++  S ++T F  NM  +    VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVD-GVPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           L+ ++AH+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR            
Sbjct: 358 LRYYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            +  ++ + Q DAIL ++LR L  LE  +I  EL  +      +  +L   ++Q   +  
Sbjct: 418 KTLLAVDDVQADAILAMQLRRLAALERQKIIDELAEIEEIIADLKDILAREERQRQIVHD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+ E +        RRT       A      + +I +E + V I++ G+ +      
Sbjct: 478 ELAEIVEKYGDE-----RRTQIV---AASGDVTDEDLIARENVVVTITSTGYAKRTKVDA 529

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
               K     +     K+ D +K      T D IL  +  G+ Y L A  L        G
Sbjct: 530 YKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAGRTARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + +G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATKQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +     V  GD + +  E  + + F+ D   +  M R   GV+   ++       
Sbjct: 650 NEGDALIGASLVDEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFRGDDQLLS 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   + +G   + +    Y +           RGG+G +  K  P+ GK + +
Sbjct: 710 MSV-VHDGGYLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGA 761



 Score = 84.1 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 6/153 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           D ILL S  G+A    A +      G   A    +    +  +++  V      LLV +S
Sbjct: 665 DDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFRGDDQLLSMSVVHDGGYLLVATS 724

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            G        E     R G   +         K+   + V   D +  +     ++   +
Sbjct: 725 GGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGAIAVDEEDEIFAITSAGGVIRTEV 784

Query: 676 DQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +QI   SR   GVRL +  +      I   + +
Sbjct: 785 NQIRPSSRATMGVRLVNLSNDVELLAIDRNVED 817


>gi|269216532|ref|ZP_06160386.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122]
 gi|269130061|gb|EEZ61143.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122]
          Length = 818

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/771 (31%), Positives = 400/771 (51%), Gaps = 30/771 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  ++I N        V+   L   +   +L Y++S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MSDNDILNEADSGGTGVRLAELGSEMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G+       KSAR VG+VIGK HPHGD +VYD++VRLAQ F  R PL+ G GNFG+
Sbjct: 61  MHDSGILPTRPHAKSARTVGDVIGKYHPHGDSAVYDTMVRLAQDFSMRVPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAA RYTEAR+ + A  +L+ +D++ VD++  Y+E   EPVV P++FPNLL NG+
Sbjct: 121 IDGDSAAAMRYTEARLAKPAMELLRDLDKETVDWQPNYDESLQEPVVLPARFPNLLVNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E  +A   ++DNP++++++L++ I GPDFPTGG ++  R+ I 
Sbjct: 181 NGIAVGMATNIPPHNLGEAIDATCLMLDNPDVTVDELMQVIPGPDFPTGG-LIMGRKGIK 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   VR+R  + E   G   IV+TEIPYQV ++ L++KI EL+  K++P + +
Sbjct: 240 DAYETGRGSLTVRSRHKIIESKTGKKSIVITEIPYQVNRTNLMKKIGELVRDKKLPEISN 299

Query: 301 IRDESAEDVRI-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +  +  + ++     +  P +++  ++  + ++  F +    L    VP+ + L  
Sbjct: 300 VHDGADRNSPVDIIIDLKSNAIPQVVLNKLYKHTQLQVGFGVINLALVD-GVPRTLSLRE 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PV 416
           +L+ ++ H+ +V+ RR+ F ++  + R  IL+GLLIA  NIDE+I IIR     +     
Sbjct: 359 MLRHYILHQEDVIVRRTRFDLRKAEERAHILEGLLIALDNIDEVIKIIRGSQTDREASER 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +  RF+L+E Q  AIL +RLR L  LE ++++ EL  L  +      +L+        I 
Sbjct: 419 LQERFNLSEAQTAAILEMRLRRLTGLERHKLEDELAELKEKIAYYKRILSDESLVREVIK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ E+K  F+       RRTT C      +    + +I  E + V ++  G+++     
Sbjct: 479 EELLEIKGRFNTP-----RRTTLC---GEAEDIDVEDLIADEEVAVTVTKAGYVKRIPVS 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGH 586
                K     +  ++ KE D ++    A T   +L  ST GK Y L    +        
Sbjct: 531 AYRQQKRGGKGMQGVNLKENDFVEHLFVASTHSYMLFFSTAGKVYRLKVYEIPEASRHAR 590

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G AI  L+ L   + I        +     L+  + +G       +      R G   + 
Sbjct: 591 GTAIVNLLPLVKGESIAAVIATKDFPEDEYLMFGTEQGMVKKTSMNLYDRTRRDGLIAIN 650

Query: 644 VSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +  ++++  V +V +G+ V +V    K + ++  ++  M R   GVR  +         +
Sbjct: 651 LKEDDQLIAVRRVKSGEDVIMVSSAGKAIKWNEGEVRSMGRDTMGVRGMTVPANTKVLGL 710

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +    +      Y +           RGG G        + G   +
Sbjct: 711 EIARPDTD-LLVITENGYGKRTPVSEYPSHHRGGQGVFTIVMTAKKGNLSA 760



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 73/203 (35%), Gaps = 8/203 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +  M   E   V  ++       +     L A++ KE D L       + + ++++S+ G
Sbjct: 619 EYLMFGTEQGMVKKTSMNLYDRTRRD--GLIAINLKEDDQLIAVRRVKSGEDVIMVSSAG 676

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           KA     G + S       ++ +  +  N  ++   +      LLV++  G       SE
Sbjct: 677 KAIKWNEGEVRSMGRDTMGVRGM-TVPANTKVLGLEIARPDTDLLVITENGYGKRTPVSE 735

Query: 631 IIANTRKG----KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-K 685
             ++ R G       +         + V    D + ++ E+  ++      + E+ R  +
Sbjct: 736 YPSHHRGGQGVFTIVMTAKKGNLSAMKVVAESDELMIISESGIIIRTKAADVSELGRATQ 795

Query: 686 GVRLQSYKDGGISDVICFKICEG 708
           GVR+ +  +      +     + 
Sbjct: 796 GVRVMNVANKDKVTAVAISTEDD 818


>gi|189485009|ref|YP_001955950.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170286968|dbj|BAG13489.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 835

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/773 (32%), Positives = 413/773 (53%), Gaps = 34/773 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
             NI +   ++  ++   ++   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM 
Sbjct: 4   EKNIKDEQEILPVSIVPRNIEDEMKNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMK 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           EMGL    A+KKSARIVG+V+GK HPHGD +VY ++VR+ Q F  RYP+I GQGNFG+ID
Sbjct: 64  EMGLKHNTAYKKSARIVGDVLGKYHPHGDSAVYGAMVRMVQDFSLRYPMIDGQGNFGSID 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTE RM  + + +L  +D++ VDF   Y+    EPV+ P+K P+LL NG++G
Sbjct: 124 GDFAAAMRYTEVRMDTITDEMLVDLDKNTVDFIPNYDGSLKEPVILPTKLPSLLINGSAG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP+HN+ E+ +A + LID+ EIS+ ++++YI GPDFPTG II+  +  I + 
Sbjct: 184 IAVGMATNIPAHNIVEVSDALVTLIDDKEISVSEIVKYIKGPDFPTGAIIL-GKSGIKDY 242

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              GRG  ++RA+  +EEV  G   I+V EIPYQV K+ LI  IA+L+  K+I  + D+R
Sbjct: 243 MEKGRGSVKIRAKTEIEEVKSGREAIIVNEIPYQVNKANLITSIADLVKDKKIDGIADLR 302

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   ++    R  +  +++  ++  + M+  F + M  L     P+VM +  IL 
Sbjct: 303 DESDRDGIRIVIEIKRDANVQVVLNQLYKHTQMQLSFGVIMLALV-NNRPKVMNVKEILI 361

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VS 419
             + HR+ ++ RR+ F +Q  + R  IL+GL IA  NID +I II+            +S
Sbjct: 362 HHIEHRKVIIIRRTKFDLQKAEARFHILEGLKIAIDNIDAVIKIIKESADEDNARVSLMS 421

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +  LT+ Q +AIL +++R L  L+  +I  E   L+   EK+ S+L   K+  + I  E 
Sbjct: 422 KLRLTKIQTEAILEMKIRQLTGLKRKEIDDEYLELIRLIEKLRSVLADPKKVLDIIKNEA 481

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
            ++K  +       +RRT       A+     + +I++E + V +S+ G+I+ +   +  
Sbjct: 482 LDIKRKYGD-----KRRTQI---QAAEADFNIEDLIQEEEVAVTMSHAGYIKRIPLDTYK 533

Query: 539 -------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEA 589
                   ++A++ +E D ++      +   +L  +T G+ Y +    +        G+A
Sbjct: 534 AQHRGGRGIAAMNTREEDFVENLFITSSHSYMLFFTTRGRLYWMRIYEIPEGARTSKGKA 593

Query: 590 IQLLIDLNHNQDIVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           I  L+ L   ++ +TA +        Y     LL+ +  G    +   + I   ++G   
Sbjct: 594 IVNLLQLQGTEEKITAAIPIRSFNPEYTKDEYLLMCTRNGIIKKIALDKFINPRKRGIIA 653

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           +K+   + +  V  +  +  V +  +    + F    I  + R G+GV+    K G    
Sbjct: 654 IKLEDGDILTEVKAINKNPEVVIATKKGSSIRFKESDIRVIGRAGRGVKGIELKKGDEVI 713

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +     +   ++  +   Y +        L KR G G +  +   R+G  + 
Sbjct: 714 GMEVFSPDD-VFLSISENGYGKRTKVGKYRLQKRAGHGVINMQMSERNGNMIG 765



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 83/277 (29%), Gaps = 14/277 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +     Y +       L      +    +   +   I   ++        +  +  R   
Sbjct: 558 ITSSHSYMLFFTTRGRLYWMRIYEIPEGARTSKGKAIVNLLQLQGTEEKITAAIPIRSFN 617

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
                        +          +I      + +      + A+  ++GD L      +
Sbjct: 618 PEYTKDEYLLMCTRNG--------IIKKIALDKFINPRKRGIIAIKLEDGDILTEVKAIN 669

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               +++ +  G +      ++      G  +   I+L    +++   V+      L +S
Sbjct: 670 KNPEVVIATKKGSSIRFKESDIRVIGRAGRGV-KGIELKKGDEVIGMEVFSPDDVFLSIS 728

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFS 674
             G     +  +     R G   + +   E+   M  + K   G+ V ++ +N   +   
Sbjct: 729 ENGYGKRTKVGKYRLQKRAGHGVINMQMSERNGNMIGIKKANDGEEVMIITQNGITIRLR 788

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           ++ I  + R  +GVRL     G     I   + +  +
Sbjct: 789 VNSISVIGRNTQGVRLVRLDAGDKVAAIACVVKDENS 825


>gi|154496139|ref|ZP_02034835.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC
           29799]
 gi|150274694|gb|EDN01758.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC
           29799]
          Length = 850

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/761 (31%), Positives = 386/761 (50%), Gaps = 17/761 (2%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
                   ++++   L   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E  L
Sbjct: 9   PEEIRYPNQHIEVSPLVPEMEKSYIEYAMSVIVGRALPDVRDGLKPVHRRILYAMYEDNL 68

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                FKKSA  VG+V+G+ HPHGD SVYD+LVRLAQ F  RY L+ G GNFG+IDGD  
Sbjct: 69  TADKPFKKSATCVGDVLGRYHPHGDASVYDALVRLAQDFSMRYMLVDGHGNFGSIDGDPP 128

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AAYRYTEAR++++++ +L+ +++D VD+   ++E   EP V PS+FPNLL NG+SGIAVG
Sbjct: 129 AAYRYTEARLSKISDEMLRDIEKDTVDWDPNFDETRKEPKVLPSRFPNLLVNGSSGIAVG 188

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+  A + ++DNPE  +  L+E+I GPDFPT G I+  R  I  +Y  G
Sbjct: 189 MATNIPPHNLTEVINATICVLDNPEAELCDLMEHIKGPDFPTKG-IIMGRSGIRAAYATG 247

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   VRAR   EE G+    I+VTEIPYQV K  LI+ +A+ +  KR+  + DIRDES 
Sbjct: 248 RGRLCVRARTEFEEFGKDRTRIIVTEIPYQVNKRMLIKNMADQVEDKRLDGISDIRDESD 307

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR---VPQVMPLDGILKE 363
            +   ++    R  +P +++  +F  + ++T F +NM  L        P+++ L  IL E
Sbjct: 308 RNGMRIVIELKRDANPQVVLNRLFAQTQLQTTFAINMLALVEVNGKLQPRILSLRHILDE 367

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-KPVMVSRFS 422
           ++A++ +V+ RR+ + ++    R  +L+GLLIA  NIDE+I IIR+     K  ++ RFS
Sbjct: 368 YIAYQEQVIIRRTKYDLKKAQERAHLLEGLLIAQDNIDEVIHIIRSRYDDAKEKLMERFS 427

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL++L+ L+  ++++E   L A       LL S +     +  E+  +
Sbjct: 428 LDDVQAQAILDMRLKALQGLDREKLENEYKELEARIAYFQQLLGSEEMLRGVLKDELIAI 487

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ +        +               +          +        ++ +     ++A
Sbjct: 488 RDKYGDERVTEIQDVEDEIDIEDLIEEEECVFTLTAGGYIKRLPASTYKTQRRGGKGITA 547

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQ 600
           +  KE D +     A T D IL  +  G+ +      +       +      ++ +   +
Sbjct: 548 MATKEEDYVDTVFTASTHDFILFFTNKGRVHRKKGYQIPEAGRMAKGTNLVNILPVESGE 607

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +        +     L +V+  G    ++ S I    + G   + +   +++  V +  
Sbjct: 608 KVTAMIHLREFPEDRYLAMVTRNGTVKRIQLSAINTARKAGIRCITLDEGDELIAVRETD 667

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           GD  + +   +   + F    +  M R   GVR    ++G    +   +   G   +   
Sbjct: 668 GDQAILIATHDGMSICFKETDVRCMGRDACGVRGIKLREGDYV-IGAARAKAGHQVLMVT 726

Query: 716 GRSYNRSENDLLGWL----GKRGGVGSLVPKGFPRSGKFLS 752
              Y +  +            RGG G        ++G  + 
Sbjct: 727 ENGYGKRTDMDEYIRSDGPQNRGGYGLKGYNVTEKTGPVVG 767



 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/445 (12%), Positives = 137/445 (30%), Gaps = 25/445 (5%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           K       +R  LLE +         ++   ++R  D    +   F L D++ +  L+M 
Sbjct: 381 KYDLKKAQERAHLLEGLLIAQDNIDEVIHIIRSRYDDAKEKLMERFSLDDVQAQAILDMR 440

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           + ++  + +    +   +             S   ++ + +   I          + EI 
Sbjct: 441 LKALQGLDREKLENEYKELEARIAYFQQLLGSEEMLRGVLKDELIAIRDKYGDERVTEIQ 500

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL-RKLEEYQIKSELDNLLAEKEKIDS 463
            +    D    +       T      I  L   +   +    +  + +     +      
Sbjct: 501 DVEDEIDIEDLIEEEECVFTLTAGGYIKRLPASTYKTQRRGGKGITAMATKEEDYVDTVF 560

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT------FCEVSRADKATLQQAMIEK 517
             ++               K+ +         + T        E      A +      +
Sbjct: 561 TASTHDFILFFTNKGRVHRKKGYQIPEAGRMAKGTNLVNILPVESGEKVTAMIHLREFPE 620

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    +++  G ++ ++  ++       +  +   EGD L           IL+ + DG 
Sbjct: 621 DRYLAMVTRNGTVKRIQLSAINTARKAGIRCITLDEGDELIAVRETDGDQAILIATHDGM 680

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +      ++         ++  I L     ++ A    +  ++L+V+  G     +  E 
Sbjct: 681 SICFKETDVRCMGRDACGVRG-IKLREGDYVIGAARAKAGHQVLMVTENGYGKRTDMDEY 739

Query: 632 IA----NTRKG---KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
           I       R G   K +        +  V  V+  D + V+ +   ++  ++  I    R
Sbjct: 740 IRSDGPQNRGGYGLKGYNVTEKTGPVVGVKVVSDADDILVINDAGVIIRMAVSGISTYGR 799

Query: 684 G-KGVRLQSYKDGGISDVICFKICE 707
             +GV+L +  +G    VI F   +
Sbjct: 800 AAQGVKLMNLDEG--VKVISFARTD 822


>gi|21104368|dbj|BAB93454.1| DNA gyraseA [Porphyromonas gingivalis]
          Length = 859

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/769 (29%), Positives = 393/769 (51%), Gaps = 39/769 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  E+ +  +S+   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR+++AM+E G  +  
Sbjct: 2   TDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTN 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             +K A  VGEV+G  HPHGD SVY +LVR+AQP+  RYPL+ GQGNFG++DGDS AA R
Sbjct: 62  PTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R++++A  +LQ +D++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT+
Sbjct: 122 YTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +P HN+ E  +  +A I+       + L++Y+  PDFPTGG  +     + E++  GRG 
Sbjct: 182 MPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGG-FIYGYSGVKEAFETGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R+R  + E       I++TEIPY V K+ L+  IA+LI  KR+  + +I DES    
Sbjct: 241 VVIRSRAEI-EQHNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  +  +++  ++ ++ +++ F +N   L     P+++ L  ++ E++ HR+
Sbjct: 300 MRIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVK-GRPRLLNLKDLIGEFVDHRQ 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
           EV+ RR  F ++    R  IL+GLLIA  NIDE+I+IIR+       M     RF L++ 
Sbjct: 359 EVVTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDLSDI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  +I+++RLR+L  LE  ++++E + ++A    +++LL         +  E+ E+KE +
Sbjct: 419 QARSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIKEKY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSV 538
                     T   E+  A +    +     + + + +S+ G+I+              V
Sbjct: 479 GD--------TRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGV 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
                  +E D ++    A     I+L +  G+ Y L    +  G  + +  AIQ L+++
Sbjct: 531 GAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNI 590

Query: 597 NHNQDIVTAF---------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           + +  +              + ++  LL  + +G                G   + +   
Sbjct: 591 DPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFSRPRANGVIAIDLRDN 650

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG---ISDVIC 702
           + +  V    G   + +     + + F    +    R   GV+     D G   +  +I 
Sbjct: 651 DGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRPSGRTAMGVKGMRLDDDGQDEVVGMIS 710

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            K  E  T +  + + Y +  N     +  RGG G        ++GK +
Sbjct: 711 IKHPEEETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITEKTGKLV 759



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 592 LLIDLNHNQDIVTAFV--YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           + +D +   ++V      +     +LVVS KG        +     R GK    ++  EK
Sbjct: 695 MRLDDDGQDEVVGMISIKHPEEETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITEK 754

Query: 650 ---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY-KDGGISDVICF 703
              +  +  VT  + + ++ ++   +   +  +  + R  +GV+L    K G     +C 
Sbjct: 755 TGKLVDIRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSKRGDEIASVCS 814

Query: 704 KIC 706
            + 
Sbjct: 815 VVS 817


>gi|508471|gb|AAA74376.1| gyrase A [Helicobacter pylori]
          Length = 826

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/766 (33%), Positives = 414/766 (54%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDRLVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A   +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE FS       RRT   E   + ++   + +I  EP+ V +S +G+++           
Sbjct: 478 KEQFSSP-----RRTEIQE---SYESIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  +    E D ++    A+T D +L ++  G+ Y L    +        G+AI  
Sbjct: 530 RGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  ++ I+       + +   L   +  G       SE  +N   G   + +   ++
Sbjct: 590 LISLAPDEKIMATLSTKDFSNERSLAFFTKNGVVKRTNLSEFGSNRSCGIRAIVLDEGDE 649

Query: 650 MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +     V  +  H+ +       + F ++ + EM R  +GV      +            
Sbjct: 650 LVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVISD 709

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +  +     +           RGG G +  K   ++G  + 
Sbjct: 710 DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVG 755



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 6/152 (3%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G     P  ++     +   +  +    ++  +    + D   KLL VS  G
Sbjct: 662 HLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVISDDGNKLLSVSENG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSID 676
                        +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI 
Sbjct: 722 LGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVGVISVDDENLDLMILTASAKMIRVSIK 781

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            I E  R   GV+L +  D  +    C K  E
Sbjct: 782 DIRETGRNASGVKLINTADKVMYVNSCPKEEE 813


>gi|134096627|ref|YP_001102288.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
 gi|291005719|ref|ZP_06563692.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
 gi|133909250|emb|CAL99362.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
          Length = 831

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/773 (29%), Positives = 385/773 (49%), Gaps = 36/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ +       ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR++++M + G
Sbjct: 1   MTETLPPEHGRIEPVDIQQEMQNSYINYAMSVIVARALPDVRDGLKPVHRRVLYSMYDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + K +R+VG+V+G  HPHGD S+YD+LVRLAQP+  R+PLI GQGNFG+   D 
Sbjct: 61  YRPDRGYVKCSRVVGDVMGNYHPHGDSSIYDTLVRLAQPWSMRHPLIDGQGNFGSPGNDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+R+  +A  +L  ++ED VDF D Y+    EP V P++ PNLL NG  GIAV
Sbjct: 121 AAAMRYTESRLDPLAMHMLADIEEDTVDFSDNYDGRSQEPDVLPARIPNLLVNGGGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ +  +  ++NPE      +E L+E I GPDFPT G ++    +I +
Sbjct: 181 GMATNIPPHNLREVADGVVWALENPEADDEALLEALIERIKGPDFPTRG-LIMGTNAIAD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG  ++RA   VEE  +G   +VVTE+PYQV    LIE IA +    ++  + DI
Sbjct: 240 AYRTGRGSIKMRAVVDVEEDTKGRTSLVVTELPYQVNPDNLIESIAAMHREGKLTGISDI 299

Query: 302 RDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DES       ++    R   P +++ +++  + ++  F +NM  L    VP+ + LD +
Sbjct: 300 ADESNSRRGMRIVITLKRDSIPKVVLNNLYKHTQLQYTFGVNMLALV-EGVPRTLRLDQV 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVM 417
           ++ ++ H+ EV+ RR+ FR++  + R  IL+GL+ A   +DE+IA+IR        +  +
Sbjct: 359 IRHYVKHQVEVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPTVDDARTGL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E Q +AIL ++LR L  LE  +I  +L  +  E E +  +L+  ++Q   I  
Sbjct: 419 IELLEVDEVQANAILEMQLRRLAALERQKIVDQLAEIEREIEDLKDILDKPERQRQIIRD 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+  + +          RRT              + +I  E + V ++  G+ +      
Sbjct: 479 ELMAIVDKHGD-----DRRTRIVPHEGE---VSMEDLIADEDVVVTLTRTGYAKRTRTDL 530

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
               K     +     K+ D +       T D IL  +  G+ Y   A  L   +    G
Sbjct: 531 YRAQKRGGKGVQGAQLKQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEANRTARG 590

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L+    ++ I        Y +   L++ +  G       ++  +N   G   + +
Sbjct: 591 QHVANLLAFQPDEHIAQVMQIKDYTAAPYLVLATRNGLVKKSRLTDFDSNRSGGLIGVNL 650

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
             ++++   V  +  D + +V    + + F      +  M R   GV    + +G     
Sbjct: 651 KDDDELVGAVLCSADDDLLLVSAEGQSIRFHASDEALRPMGRATSGVLGMRFNEGDELLA 710

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +     +    + +    Y +        +  RGG G L  +   + G+ + +
Sbjct: 711 MGVVRPDR-YVLVATDGGYAKRTPIDDYPVQGRGGKGVLTIQYDRKRGRLVGA 762



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 6/152 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
               D +LL+S +G++    A +      G   +  L +  N   +++   V      +L
Sbjct: 662 CSADDDLLLVSAEGQSIRFHASDEALRPMGRATSGVLGMRFNEGDELLAMGVVRPDRYVL 721

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVT-GDHVAVVGENRKLL 671
           V +  G A      +     R GK  L +       ++   + V   D +  +     ++
Sbjct: 722 VATDGGYAKRTPIDDYPVQGRGGKGVLTIQYDRKRGRLVGALIVDVDDELYAITSTGGVI 781

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  ++ +  R  KGVRL +  DG     + 
Sbjct: 782 RTTAKEVRKAGRQTKGVRLMNLGDGTSVVAVA 813


>gi|86160761|ref|YP_467546.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777272|gb|ABC84109.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 907

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/786 (31%), Positives = 399/786 (50%), Gaps = 61/786 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++   + + YL Y++S I  RA+PD+RDG KPVHRR+++AM   GL +   + K A +
Sbjct: 27  QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHYNKRYSKCAGV 86

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+ K HPHGD SVYD+LVRLAQ +  RYPLI GQGNFG++DGD AAAYRYTE R+ +
Sbjct: 87  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 146

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +++ +L  +D+D VD+   ++E   EP V P++FPNLL NG++GIAVGMAT+IP HN+ E
Sbjct: 147 LSDHLLADIDKDTVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +AA+ LI+NP+ ++  L+ +I GPDFPT G I+  R+ I  +Y  GRG  +VRAR  V
Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAG-IIRGRDGIRAAYEKGRGTIQVRARTVV 265

Query: 259 E-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E         IVVTEIPYQV K++L+E IAEL+  KRI  + D+RDES+ +   ++    
Sbjct: 266 EIHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELK 325

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R     +++ +++  + M+  F + + +   G  P+V+ L  +L+ ++AHRR+V+ RR+ 
Sbjct: 326 RDALAQVVLNNLYAHTQMQMGFGV-IMLAIDGGQPRVLTLKEMLERFVAHRRDVVTRRTR 384

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNL 434
           + ++    R  IL G  IA  +IDEII +I+        +  M++RF+L+E Q  AIL +
Sbjct: 385 YELRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMARFALSELQAKAILEM 444

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L+ L  LE  +I  EL  +     ++  +L S K     I  E+REVK++F+       
Sbjct: 445 QLQRLTGLERQKILDELAEVQKLITRLKEILASEKVLMELIVGELREVKQLFADE----- 499

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT   E+         + +I +E + V +S+ G+++          K      +    +
Sbjct: 500 RRT---EIQGEATDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATR 556

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           + D L+    A T   +L+ S  GK Y L    +        G+ I  L+ L   + +  
Sbjct: 557 DEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGKPIVNLVQLAPGEKVAA 616

Query: 605 AFVY------------------------------DSTCKLLVVSSKGNAFIVEESEIIAN 634
                                                  + +V+ KG        +    
Sbjct: 617 ILPVRRLPEPAGAAEETPEAEGAEAEKAEEATAEGPPAFVFMVTRKGLIKKTRLEQFARP 676

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
              G   L +   +++        G H+ +       + F    +  M R   GV+  + 
Sbjct: 677 RAAGIIGLGIEEGDELITARLTDGGGHILLSTARGMAIRFEESDVRPMGRTAYGVKGITL 736

Query: 693 KDGGISD-----VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           ++G             +  +  T +      Y +        +  RGG G +  K   R+
Sbjct: 737 EEGDEVVAGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKTTERN 796

Query: 748 GKFLSS 753
           G  +++
Sbjct: 797 GPVVAA 802



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGEN 667
             +L V++ G     E +E    TR GK  + + + E+   +     V   + V ++   
Sbjct: 758 HTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKTTERNGPVVAAAPVGDAEEVMLITNA 817

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             L+      I  + R  +GVRL + +      V   ++ E
Sbjct: 818 GMLIRMPARGISVIGRNTQGVRLITLESKEEQVVGVARVAE 858


>gi|19551262|ref|NP_599264.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032]
 gi|62388905|ref|YP_224307.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032]
 gi|21322777|dbj|BAB97406.1| DNA gyrase (topoisomerase II) A subunit [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324238|emb|CAF18578.1| DNA TOPOISOMERASE (ATP-HYDROLYSING) [Corynebacterium glutamicum
           ATCC 13032]
          Length = 856

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/773 (29%), Positives = 390/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ NT   + V  + +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G
Sbjct: 1   MSDDNTGQFDRVNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDNG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                ++ KSA+ V + +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPDRSYVKSAKPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ V+F   Y+ +  EP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ +A   L++NP+    +     ++++ GPDFPT G ++   + I +
Sbjct: 181 GMATNIPPHNLNELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAG-LIIGDKGIHD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+PYQV    LI  IAE +   ++  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEEEG-NRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ ++F  S ++  F  NM  +    VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLFKHSQLQANFGANMLSIVD-GVPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+ ++AH+ EV+ RR+ +R+   + R  +L+GL+ A   +DE+IA+IR    P       
Sbjct: 358 LRYYVAHQIEVIVRRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEARTGL 417

Query: 421 F---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + E Q DAIL ++LR L  LE  +I  EL  +  E   + ++L S ++Q   +  
Sbjct: 418 MSLLDVDEAQADAILAMQLRRLAALERQKIIDELAEIELEIADLKAILASPERQRTIVRD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+ E +        RR+       A     ++ +I +E + + I++ G+ +      
Sbjct: 478 ELTEIVEKYGDE-----RRSQII---AATGDVSEEDLIARENVVITITSTGYAKRTKVDA 529

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
               K     +     K+ D ++    + T D IL  +  G+ Y L A  L        G
Sbjct: 530 YKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNYGRVYRLKAFELPEASRTARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ ++ G        +  +    G   + +
Sbjct: 590 QHVANLLEFQPGEQIAQVIQLESYNDFPYLVLATAHGRVKKSRLLDYESARSGGLIAINL 649

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           + ++++         D + +V E  + + F+ D   +  M R   GV+   ++D      
Sbjct: 650 NEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQLRPMGRATAGVKGMRFRDNDQLLS 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   + +G   + +    Y +           RGG+G +  K  P+ G+ +S+
Sbjct: 710 MSV-VRDGEFLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTPKRGRLVSA 761



 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 6/157 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
               D +LL+S  G++    A +      G   A    +    N  +++  V      LL
Sbjct: 661 CGEEDDLLLVSEFGQSIRFTADDEQLRPMGRATAGVKGMRFRDNDQLLSMSVVRDGEFLL 720

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENRKLL 671
           V +S G        +     R G   +         ++   + V   D +  +     ++
Sbjct: 721 VATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTPKRGRLVSAIAVEEDDEIFAITSAGGVV 780

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
              + QI   SR   GVRL + ++G     I   + +
Sbjct: 781 RTEVKQIRPSSRATMGVRLVNLEEGVELLAIDKNVED 817


>gi|114797721|ref|YP_759608.1| DNA topoisomerase IV subunit A [Hyphomonas neptunium ATCC 15444]
 gi|114737895|gb|ABI76020.1| DNA topoisomerase IV, A subunit [Hyphomonas neptunium ATCC 15444]
          Length = 744

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/749 (52%), Positives = 531/749 (70%), Gaps = 7/749 (0%)

Query: 6   ISNSN-TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +S S      + +    +  AL +RYLAYALSTI  RA+PD+RDG KPV RRI++ M  +
Sbjct: 1   MSKSTAEPPADRIINEPMSEALSKRYLAYALSTITSRALPDVRDGLKPVQRRILYGMRVL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            LD    ++K A+IVG+V+G  HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD
Sbjct: 61  RLDPEGGYRKCAKIVGDVMGNYHPHGDSSIYDTLVRLAQDFNVRYPLVDGQGNFGNIDGD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAAYRYTEARMT+ AEL+++G+DE+AVDFR  Y E D EPVV P+ FPNLLANG +GIA
Sbjct: 121 SAAAYRYTEARMTRGAELLMEGLDENAVDFRPNYAENDEEPVVLPAGFPNLLANGATGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMATSIP HNV EI +AA  LI+ P+ + E+L+E++ GPDFPTGG+IVE R S++E+Y 
Sbjct: 181 VGMATSIPPHNVAEIIDAARHLIEKPKATTEELMEFVQGPDFPTGGVIVEDRASMLEAYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG FR+RARW VE+ GRG++ I+VTEIPYQVQKSRL+EK++EL+ AK++PLLED+RDE
Sbjct: 241 TGRGAFRMRARWHVEDTGRGTYQIIVTEIPYQVQKSRLLEKLSELLEAKKVPLLEDVRDE 300

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SAEDVR+VL P+ ++++PD+LMES+F   D+ETRF LNMNVL     PQVM L  +L+ +
Sbjct: 301 SAEDVRLVLVPRAKTVEPDVLMESLFRTCDLETRFSLNMNVL-HKGAPQVMGLRDVLQAY 359

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L HRREV+ RR+ FR+  I++R+ IL+G L AYLNIDE+I IIR ED+PKPV++ RF ++
Sbjct: 360 LDHRREVVVRRAEFRLDKIEKRLHILEGFLKAYLNIDEVIRIIRTEDEPKPVLMKRFKIS 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AILNLRLR+LRKLEE +I+ E   L  E++++  L+ S ++QW +++ E++  ++
Sbjct: 420 DIQAEAILNLRLRALRKLEEMEIQGEHTKLTEERDELVLLIGSVRRQWTRVSKELKAARD 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            F  ST LGRRR TF +    D A   +A   KEP+TVV+S +GWIR +K H +D   + 
Sbjct: 480 EFDPSTALGRRRATFEQAPTVDLAAALEATRPKEPVTVVLSAQGWIRGMKGHGLDPDTIK 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           FKEGD         +TD+++ +S+DG+A+ LPA  L  GRGHGE I++ I+L  N  IV 
Sbjct: 540 FKEGDGPSFTEEVMSTDKLVFMSSDGRAFMLPADKLPGGRGHGEPIRISIELEDNVAIVG 599

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
            F ++   K ++ SS G  F+V E+E+ +N + GK  +       + + V V GD +AVV
Sbjct: 600 MFKFEPERKRVMASSTGYGFVVPEAELESNRKAGKQIVNTGGG-HLNVCVPVLGDMIAVV 658

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSE 723
           G NRK+LIF +  +PEM RGKG +LQSY  G  ++D+I F   +GL  +        R+ 
Sbjct: 659 GTNRKMLIFPLKDLPEMPRGKGNKLQSYSGGAELADLITFDKRDGLIVVTG---GRFRAF 715

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +   W G+R   G +VPKGFPR+G F  
Sbjct: 716 EEWKEWKGQRAQAGKVVPKGFPRTGTFSG 744


>gi|330507224|ref|YP_004383652.1| DNA gyrase subunit A [Methanosaeta concilii GP-6]
 gi|328928032|gb|AEB67834.1| DNA gyrase, A subunit [Methanosaeta concilii GP-6]
          Length = 797

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/742 (32%), Positives = 397/742 (53%), Gaps = 30/742 (4%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKSAR
Sbjct: 4   VQVNITEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGMTHDQPYKKSAR 63

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+GK HPHGD ++Y+++VR+AQ F  RYPLI GQGNFG+IDGD AAA RYTE R++
Sbjct: 64  VVGDVMGKYHPHGDAAIYETMVRMAQTFSMRYPLIDGQGNFGSIDGDPAAAMRYTEVRLS 123

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++AE +L  ++++ VDF   Y+    EP V P K PNLL NG++GIAVGMAT+IP HN+ 
Sbjct: 124 KIAEEMLADIEKNTVDFVPNYDGSLKEPTVLPGKLPNLLLNGSTGIAVGMATNIPPHNLN 183

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+  A + LIDNP+ ++ +L+ Y+ GPDFPTGG IV  R  I  +Y  G+G   ++A+  
Sbjct: 184 ELAGAIIHLIDNPQATVGELMHYLPGPDFPTGGYIV-GRAGIESAYLTGKGSIIMQAKSE 242

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +EE G  S  I+ +E+PYQV K++LIE +AE++   R+  + D+RDES ++   ++    
Sbjct: 243 IEE-GAKSTRIIFSELPYQVNKAKLIEDMAEMVKGGRLEGISDLRDESDKEGIRMVVDIK 301

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              + ++++  +   + ++T + +N  VL    +P+++ L   L++++ +R  V+ RR+ 
Sbjct: 302 TGFNANVVLNQLHKHTALQTSYGINNMVLVD-GMPRILSLKETLEQYIYYRSIVVERRTR 360

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNL 434
           F + A ++R  IL GLLIA  NIDE+I II+    P            L+E Q  AIL++
Sbjct: 361 FELDAAEKRAHILAGLLIALKNIDEVIRIIKAAPTPAEARDGLIEAFLLSEEQAKAILDM 420

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE+ +I SE   L      +  +L+S  +  + I  E+ E+   +        
Sbjct: 421 RLQRLTGLEQEKIVSEAAELEKLIAHLRQILSSNLEILSIIKDELTELISKYGDE----- 475

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFK 546
           RRT   E   AD     + +I++E + V I++ G+I+    ++          +     K
Sbjct: 476 RRTQIIE---ADGEVTNEDLIQEEEVAVTITSSGYIKRQPVNTYRMQRRGGRGVIGAETK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
             + +     A T D +L  +  GKA+ L    + +      G++I  L+ L  ++ I  
Sbjct: 533 TEEFVTDVSTASTKDYLLFFTDKGKAHWLKVYEVPALGRAARGKSIVNLLQLEPDERIAG 592

Query: 605 AFVYDSTC--KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
           A    S     +++V+  GN   +         + G   + +   + +       G+  +
Sbjct: 593 AIPVKSFQAGYIVLVTRSGNIVKMPLQAFSNPRKGGIKAVNLK-GDSLVSAKLTNGEKEL 651

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSY 719
            V  +  K + F    +   +RG  GV+  S   G  +  +   +   G T +    + Y
Sbjct: 652 LVATKFGKAIRFKEGDVRASNRGTMGVKAISLNMGDELISMDVIEPGSGSTLLTVTNQGY 711

Query: 720 NRSENDLLGWLGKRGGVGSLVP 741
            +          +RGG G    
Sbjct: 712 GKRTELEEYPQQRRGGKGVKNI 733



 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 6/141 (4%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLVVSSKGNAF 624
           +  GKA     G++ +       +   I LN   ++++  V +      LL V+++G   
Sbjct: 655 TKFGKAIRFKEGDVRASNRGTMGV-KAISLNMGDELISMDVIEPGSGSTLLTVTNQGYGK 713

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMS 682
             E  E     R GK    + + +            D + V   +  ++      I    
Sbjct: 714 RTELEEYPQQRRGGKGVKNIDARKGYVCCTTTVSEEDELLVTTRDGVIIRIPASDIRVQG 773

Query: 683 R-GKGVRLQSYKDGGISDVIC 702
           R  +GVR+ + K G     I 
Sbjct: 774 RSTQGVRIMNVKPGDEVAAIA 794



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 4/99 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L ++  G             R  G+ ++ +          T        +LLV +  
Sbjct: 701 STLLTVTNQGYGKRTELEEYPQQRRGGKGVKNIDARKGYVCCTT--TVSEEDELLVTTRD 758

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           G    +  S+I    R   G   + V   +++  + ++ 
Sbjct: 759 GVIIRIPASDIRVQGRSTQGVRIMNVKPGDEVAAIARIN 797


>gi|145294055|ref|YP_001136876.1| DNA gyrase subunit A [Corynebacterium glutamicum R]
 gi|140843975|dbj|BAF52974.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 856

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/773 (29%), Positives = 389/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ NT   + V  + +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G
Sbjct: 1   MSDDNTGQFDRVNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDNG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                ++ KSA+ V + +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPDRSYVKSAKPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ V+F   Y+ +  EP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ +A   L++NP+    +     ++++ GPDFPT G ++   + I +
Sbjct: 181 GMATNIPPHNLNELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAG-LIIGDKGIHD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+PYQV    LI  IAE +   ++  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEEEG-NRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ ++F  S ++  F  NM  +    VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLFKHSQLQANFGANMLSIVD-GVPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+ ++AH+ EV+ RR+ +R+   + R  +L+GL+ A   +DE+IA+IR    P       
Sbjct: 358 LRYYVAHQIEVIVRRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEARTGL 417

Query: 421 F---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L S ++Q   +  
Sbjct: 418 MSLLDVDEAQADAILAMQLRRLAALERQKIIDELAEIELEIADLKDILASPERQRTIVRD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+ E +        RR+       A     ++ +I +E + + I++ G+ +      
Sbjct: 478 ELTEIVEKYGDE-----RRSQII---AATGDVSEEDLIARENVVITITSTGYAKRTKVDA 529

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
               K     +     K+ D ++    + T D IL  +  G+ Y L A  L        G
Sbjct: 530 YKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNYGRVYRLKAFELPEASRTARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ ++ G        +  +    G   + +
Sbjct: 590 QHVANLLEFQPGEQIAQVIQLESYNDFPYLVLATAHGRVKKSRLLDYESARSGGLIAINL 649

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           + ++++         D + +V E  + + F+ D   +  M R   GV+   ++D      
Sbjct: 650 NEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQLRPMGRATAGVKGMRFRDNDQLLS 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   + +G   + +    Y +           RGG+G +  K  P+ G+ +S+
Sbjct: 710 MSV-VRDGEFLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTPKRGRLVSA 761



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 6/157 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
               D +LL+S  G++    A +      G   A    +    N  +++  V      LL
Sbjct: 661 CGEEDDLLLVSEFGQSIRFTADDEQLRPMGRATAGVKGMRFRDNDQLLSMSVVRDGEFLL 720

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENRKLL 671
           V +S G        +     R G   +         ++   + V   D +  +     ++
Sbjct: 721 VATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTPKRGRLVSAIAVEEDDEIFAITSAGGVV 780

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
              + QI   SR   GVRL + ++G     I   + +
Sbjct: 781 RTEVKQIRPSSRATMGVRLVNLEEGVELLAIDKNVED 817


>gi|34541069|ref|NP_905548.1| DNA gyrase subunit A [Porphyromonas gingivalis W83]
 gi|34397384|gb|AAQ66447.1| DNA gyrase, A subunit [Porphyromonas gingivalis W83]
          Length = 859

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/769 (29%), Positives = 394/769 (51%), Gaps = 39/769 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  E+ +  +S+   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR+++AM+E G  +  
Sbjct: 2   TDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTN 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             +K A  VGEV+G  HPHGD SVY +LVR+AQP+  RYPL+ GQGNFG++DGDS AA R
Sbjct: 62  PTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R++++A  +LQ +D++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT+
Sbjct: 122 YTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +P HN+ E  +  +A I+       + L++Y+  PDFPTGG  +     + E++  GRG 
Sbjct: 182 MPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGG-FIYGYSGVKEAFETGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R+R  + E       I++TEIPY V K+ L+  IA+LI  KR+  + +I DES    
Sbjct: 241 VVIRSRAEI-EQHNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  +  +++  ++ ++ +++ F +N   L     P+++ L  ++ E++ HR+
Sbjct: 300 MRIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVK-GRPRLLNLKDLIGEFVDHRQ 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
           EV+ RR  F ++    R  IL+GLLIA  NIDE+I+IIR+       M     RF L++ 
Sbjct: 359 EVVTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDLSDI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  +I+++RLR+L  LE  ++++E + ++A    +++LL         +  E+ E+KE +
Sbjct: 419 QARSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIKEKY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSV 538
                     T   E+  A +    +     + + + +S+ G+I+              V
Sbjct: 479 GD--------TRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGV 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
                  +E D ++    A     I+L +  G+ Y L    +  G  + +  AIQ L+++
Sbjct: 531 GAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNI 590

Query: 597 NHNQDIVTAF---------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           + +  +              + ++  LL  + +G                G   + +   
Sbjct: 591 DPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFSRPRANGVIAIDLRDN 650

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG---ISDVIC 702
           + +  V    G   + +     + + F    +    R   GV+  +  D G   +  +I 
Sbjct: 651 DGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRPSGRTAMGVKGMTLDDDGQDEVVGMIS 710

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            K  E  T +  + + Y +  N     +  RGG G        ++GK +
Sbjct: 711 IKHPEEETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITEKTGKLV 759



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 592 LLIDLNHNQDIVTAFV--YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           + +D +   ++V      +     +LVVS KG        +     R GK    ++  EK
Sbjct: 695 MTLDDDGQDEVVGMISIKHPEEETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITEK 754

Query: 650 ---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY-KDGGISDVICF 703
              +  +  VT  + + ++ ++   +   +  +  + R  +GV+L    K G     +C 
Sbjct: 755 TGKLVDIRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSKRGDEIASVCS 814

Query: 704 KIC 706
            + 
Sbjct: 815 VVS 817


>gi|188994739|ref|YP_001928991.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277]
 gi|188594419|dbj|BAG33394.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277]
          Length = 859

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/769 (29%), Positives = 394/769 (51%), Gaps = 39/769 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  E+ +  +S+   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR+++AM+E G  +  
Sbjct: 2   TDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTN 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             +K A  VGEV+G  HPHGD SVY +LVR+AQP+  RYPL+ GQGNFG++DGDS AA R
Sbjct: 62  PTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R++++A  +LQ +D++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT+
Sbjct: 122 YTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +P HN+ E  +  +A I+       + L++Y+  PDFPTGG  +     + E++  GRG 
Sbjct: 182 MPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGG-FIYGYSGVKEAFETGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R+R  + E       I++TEIPY V K+ L+  IA+LI  KR+  + +I DES    
Sbjct: 241 VVIRSRAEI-EQHNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  +  +++  ++ ++ +++ F +N   L     P+++ L  ++ E++ HR+
Sbjct: 300 MRIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVK-GRPRLLNLKDLIGEFVDHRQ 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
           EV+ RR  F ++    R  IL+GLLIA  NIDE+I+IIR+       M     RF L++ 
Sbjct: 359 EVVTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDLSDI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  +I+++RLR+L  LE  ++++E + ++A    +++LL         +  E+ E+KE +
Sbjct: 419 QARSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIKEKY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSV 538
                     T   E+  A +    +     + + + +S+ G+I+              V
Sbjct: 479 GD--------TRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGV 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
                  +E D ++    A     I+L +  G+ Y L    +  G  + +  AIQ L+++
Sbjct: 531 GAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNI 590

Query: 597 NHNQDIVTAF---------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           + +  +              + ++  LL  + +G                G   + +   
Sbjct: 591 DPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFSRPRANGVIAIDLRDN 650

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG---ISDVIC 702
           + +  V    G   + +     + + F    +    R   GV+  +  D G   +  +I 
Sbjct: 651 DGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRPSGRTAMGVKGMTLDDDGEDEVVGMIS 710

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            K  E  T +  + + Y +  N     +  RGG G        ++GK +
Sbjct: 711 IKHPEEETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITEKTGKLV 759



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 8/127 (6%)

Query: 592 LLIDLNHNQDIVTAFV--YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           + +D +   ++V      +     +LVVS KG        +     R GK    ++  EK
Sbjct: 695 MTLDDDGEDEVVGMISIKHPEEETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITEK 754

Query: 650 ---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY-KDGGISDVICF 703
              +  +  VT  + + ++ ++   +   +  +  + R  +GV+L    K G     +C 
Sbjct: 755 TGKLVDIRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSKRGDEIASVCS 814

Query: 704 KICEGLT 710
            + E   
Sbjct: 815 VVSEEEE 821


>gi|294101263|ref|YP_003553121.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261]
 gi|293616243|gb|ADE56397.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261]
          Length = 817

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/764 (32%), Positives = 403/764 (52%), Gaps = 29/764 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
                 +   V  + L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL
Sbjct: 3   EKKGEPLFGKVVPLPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMELGL 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               A+KKSAR+VGE +GK HPHGD ++YD++VR+AQ F  RYPL+ GQGNFG+IDGD A
Sbjct: 63  RHNTAYKKSARVVGETMGKYHPHGDSAIYDTMVRMAQDFSMRYPLVDGQGNFGSIDGDPA 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+ ++ EL+L  +D+D VD+   ++E   EP+  P+  PNLL NG+SGIAVG
Sbjct: 123 AAMRYTEARLYEIGELMLADIDQDTVDWGPNFDESLQEPLCLPAMLPNLLINGSSGIAVG 182

Query: 187 MATSIPSHNVQEICEAALAL--IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           MAT+IP HN+ E+ +A   L   +  ++ I ++L  + GPDFPTGG ++  R+ I+++YR
Sbjct: 183 MATNIPPHNLVEVVDALCYLIDTEPEQVDIGEILFRMPGPDFPTGG-LILGRDGIIDAYR 241

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +R R  +EE  RG   IV+TEIPY V K+ LIE IA+ +  K I  + D+RDE
Sbjct: 242 TGRGKITMRGRTHIEEGKRGKTFIVITEIPYMVNKTNLIETIAKNVQDKTIDGVMDLRDE 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++   NR  DP+L++  ++  + +++ F +    L     P+ + ++ +L  +
Sbjct: 302 SDREGLRIVIEVNRDTDPNLVLRQLYRRTQLQSTFGVINLALID-GYPKELSIEEMLNIF 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRF 421
           L HRR V+ RR+ FR++  + R  I++GL+ A   IDE+IA+IR     +       S+ 
Sbjct: 361 LNHRRSVVRRRTQFRLEKAEARAHIVEGLVKALDIIDEVIALIRGSATTEEAKEGLISKL 420

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             +E Q  AIL +RL+ L  LE  ++++EL  LL++ E+  ++L + K   + I  E+ E
Sbjct: 421 DFSEAQAQAILEMRLQRLTGLEREKLEAELAQLLSDIERYQTILGNPKVLDSVIKEELLE 480

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--- 538
           VK  F        R+T   +   A +    + +I +  I VV+S  G++R          
Sbjct: 481 VKRRFGNE-----RKTEIID---AVEDVSIEDLIPESDIVVVLSRDGYLRRKDLQEYTLQ 532

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL- 592
                       +E D + +     T   I L ++ G+   L    +   +     +   
Sbjct: 533 GRGGKGRKGTALQEEDEVALVAVTSTHRDIYLFTSKGRVLALKGYVIPESKTGRGKLINR 592

Query: 593 LIDLNHNQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            + L   + +VT      D       ++ +G A  ++ SE+   TR G+  + +   +++
Sbjct: 593 FVALEEGERVVTMHGRAVDGAKYAFFITLRGTAKRLDLSELENLTRAGRRVMGLDEGDEI 652

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +V  +G DH+ +V    + L     +   M R  +GVR    +      + C  +  G
Sbjct: 653 SQIVLTSGDDHLLIVTAQGQALRTHESEFRPMGRTARGVRGIRLRKNDYV-IGCDVVANG 711

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  +   + +        L  RGG G +V     R+G  + 
Sbjct: 712 RWPLLLSENGFGKRTKYDEFSLRHRGGSGVIVMNLSDRTGLIVG 755



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 56/175 (32%), Gaps = 6/175 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
               +   EGD +   +     D +L+++  G+A                 ++  I L  
Sbjct: 640 GRRVMGLDEGDEISQIVLTSGDDHLLIVTAQGQALRTHESEFRPMGRTARGVRG-IRLRK 698

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVV-- 654
           N  ++   V  +    L++S  G     +  E     R   G   + +S    + +    
Sbjct: 699 NDYVIGCDVVANGRWPLLLSENGFGKRTKYDEFSLRHRGGSGVIVMNLSDRTGLIVGCWS 758

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
              GD +  +    +++  ++ + P + R   G  +    +G           E 
Sbjct: 759 VAEGDEIVAITSRGRMIRLAVSESPVLGRTAMGSIMMRLDEGDTVATASVVSTED 813


>gi|15835079|ref|NP_296838.1| DNA gyrase subunit A [Chlamydia muridarum Nigg]
 gi|270285246|ref|ZP_06194640.1| DNA gyrase subunit A [Chlamydia muridarum Nigg]
 gi|270289265|ref|ZP_06195567.1| DNA gyrase subunit A [Chlamydia muridarum Weiss]
 gi|301336642|ref|ZP_07224844.1| DNA gyrase subunit A [Chlamydia muridarum MopnTet14]
 gi|13627142|sp|Q9PKK4|GYRA_CHLMU RecName: Full=DNA gyrase subunit A
 gi|7190504|gb|AAF39312.1| DNA gyrase, subunit A [Chlamydia muridarum Nigg]
          Length = 833

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 385/762 (50%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGEAVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  +  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSSIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ NP+ SIE++LE + GPDFPTGG I+   E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANPQTSIEEILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRL+E+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARIHVEENSDKQRENIILTEMPYNVNKSRLVEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVIINRLYKFTDVQVTFGANMLALDK-NLPRTMSIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR     +         F  +E Q  
Sbjct: 363 RRRTRYELNKAETRAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFGFSEAQSL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E + LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEIDKVQKEYNELLEKIAYYRRVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRTT      A      + +I  E + + IS   +++ +            +   
Sbjct: 483 -----RRTTIE--MDAGDVRDIEDIIADESVIITISGDDYVKRMPVKVFREQKRGGQGVT 535

Query: 550 SLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--- 597
              +            A T D +L+ +  G+ Y L    L  G    +   ++  L    
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNMGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        ++    LL+ + KG    V      +  +KG   L++   +++    
Sbjct: 596 PGEQVAAVLNVKRFEQGEYLLLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAAR 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  D++  M R  +GVR  S K+     V C  + +  + 
Sbjct: 656 HIVNDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEEDFVVSCQVVTDDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RG VG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSLVCDFRETNRGSVGVRSILINQRNGDVLGA 757



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 57/169 (33%), Gaps = 10/169 (5%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +  ++++L +  G A   P   +         ++ +   N    +V+  V     
Sbjct: 654 ARHIVNDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEEDFVVSCQVVTDDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G        +     R         +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSLVCDFRETNRGSVGVRSILINQRNGDVLGAISVTDFDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           + +  ++  +  M R  +GVRL + ++G     +     E L+    +G
Sbjct: 774 QAIRINMQDVRVMGRATQGVRLVNLREGDTLVAM-----EKLSVNTESG 817


>gi|291277095|ref|YP_003516867.1| DNA gyrase subunit A [Helicobacter mustelae 12198]
 gi|290964289|emb|CBG40138.1| DNA gyrase subunit A [Helicobacter mustelae 12198]
          Length = 816

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/747 (35%), Positives = 417/747 (55%), Gaps = 33/747 (4%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +E YL Y++S I  RA+PD +DG KPVHRRI++AM+E+G+     +KKSARIVG+VIGK 
Sbjct: 17  KESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELGVTSKTPYKKSARIVGDVIGKY 76

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEAR+T+ +E IL+ 
Sbjct: 77  HPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEARLTKASEEILRD 136

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+D VDF   Y++   EP V P++ PNLL NG+SGIAVGMATSIP H + EI +AA+ +
Sbjct: 137 LDKDTVDFVPNYDDTLKEPDVLPTRIPNLLVNGSSGIAVGMATSIPPHRIDEIIDAAIYM 196

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I + + S E+LLE++ GPDFPTGG I+  ++ I ++YR GRG  +VRA+  +E+      
Sbjct: 197 IRHKDASSEELLEFVQGPDFPTGG-IIFGKQGIRDAYRTGRGRIKVRAKVHIEKTK-TRD 254

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            IV+ E+P+QV K+RL+E+I+EL   K I  + ++RDES  D   V+    R    ++++
Sbjct: 255 VIVIDEVPFQVNKARLVEQISELARDKVIEGIAEVRDESDRDGIRVVIELKREAMSEIVL 314

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             ++  S MET F + +  ++  + P++  L  +L  ++ HR+ V+ RR+ F ++    R
Sbjct: 315 NHLYKSSVMETTFGIILLAIN-NKEPKIFTLPELLNIFINHRKTVVIRRTIFDLEKAKAR 373

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             IL+GL IA  +IDE+IA+IR+       K  ++ RF L+E Q  AIL +RL+ L  LE
Sbjct: 374 AHILEGLKIALDHIDEVIALIRSSQDVEIAKNALMERFGLSELQSKAILEMRLQRLTGLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             +I+ E  +LL E E + S+L S ++    I+ E+ E+KE FS        R T  E  
Sbjct: 434 RDKIEQEYASLLQEIEYLSSILKSEEKLNEIISNELLEIKEKFSSP------RCTIIE-- 485

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
              ++   + +I  EP+ V +S+RG+++                  + +  + D ++   
Sbjct: 486 EDYESIDVEDLIPNEPVVVTMSHRGYVKRVQLKVYEKQNRGGKGKISGNTHDDDFIQSFF 545

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDS 610
            A+T D IL ++  G+ Y L    +        G+A+  LI L+ ++ I+       +  
Sbjct: 546 VANTHDTILFITNKGQLYWLKVYKIPEAGRTAIGKAVVNLIQLSSDEKIMATITTSDFHD 605

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVVGENR 668
              L+  +  G       SE       G   + + +++++     +T D   + V     
Sbjct: 606 DKSLVFFTKNGIVKRTNLSEYSNIRSIGVRAINLDADDELVTASIITQDVKELFVATYQG 665

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             + F I+ + E+ R  +GV    +  K+  +      +  E    +  + +   +    
Sbjct: 666 MCIRFDINDVREIGRAARGVTAIRFKAKEDSVIGATTIR-SENDKLLTVSEQGIGKQTLA 724

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               L  RGG G +V K   ++GK +S
Sbjct: 725 GAYRLQSRGGKGVIVMKLTAKTGKLVS 751



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 7/153 (4%)

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGN 622
            + +  G        ++         +  +        ++ A        KLL VS +G 
Sbjct: 659 FVATYQGMCIRFDINDVREIGRAARGVTAIRFKAKEDSVIGATTIRSENDKLLTVSEQGI 718

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSIDQ 677
                       +R GK  + +    K   +  ++ V  +   + V+  + K++    + 
Sbjct: 719 GKQTLAGAYRLQSRGGKGVIVMKLTAKTGKLVSIINVNDENMDLMVLTTSGKMIRVDTEA 778

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           I E  R   GV++ +     ++        E  
Sbjct: 779 IREAGRNTSGVKIVNVAGEKVAYASSCPKEEKE 811


>gi|239946992|ref|ZP_04698745.1| DNA topoisomerase IV, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921268|gb|EER21292.1| DNA topoisomerase IV, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 738

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/740 (50%), Positives = 529/740 (71%), Gaps = 5/740 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT++  L++  +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTEICTLLMIDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALAL-IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN+ E+C+A + L   +P+  I  ++ +I GPDFPTGGII++  E I  +Y  GRG  
Sbjct: 181 PPHNLHELCDALVHLIDHHPKAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSL 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RVR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R
Sbjct: 241 RVRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIR 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +++ P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  +L+E+LAHR+ 
Sbjct: 301 LIIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQN 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           ++ RRS++ +  I  R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+A
Sbjct: 361 IVTRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ILN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T
Sbjct: 421 ILNTRLRSLRKLEEQEIINEHGNLQKQQAILEEILNNPKELWKVVKKEIKAVQTKFGLNT 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+
Sbjct: 481 VIGARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDA 540

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
            K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY  
Sbjct: 541 EKFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKP 599

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
              LL+ SS G  F+V  +E++A T+ GK  + +         + V GD +A +GE+RKL
Sbjct: 600 DQLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNIPDGHACIACLPVNGDSIACIGESRKL 659

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L+F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +L
Sbjct: 660 LVFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFL 716

Query: 731 GKRGGVGSLVPKGFPRSGKF 750
           GKRG  G L P GFP++ +F
Sbjct: 717 GKRGNTGKLPPMGFPKNNRF 736


>gi|15645324|ref|NP_207495.1| DNA gyrase subunit A [Helicobacter pylori 26695]
 gi|2507466|sp|P48370|GYRA_HELPY RecName: Full=DNA gyrase subunit A
 gi|2313826|gb|AAD07753.1| DNA gyrase, sub A (gyrA) [Helicobacter pylori 26695]
          Length = 827

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/766 (33%), Positives = 415/766 (54%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +++    +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRMDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L  +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLHLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE FS       RRT   E   + +    + +I  EP+ V +S +G+++           
Sbjct: 478 KEQFSSP-----RRTEIQE---SYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  +    E D ++    A+T D +L ++  G+ Y L    +        G+AI  
Sbjct: 530 RGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  ++ I+       +     L   +  G       SE  +N   G   + +   ++
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDE 649

Query: 650 MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +     V  +  H+ +       + F ++++ E+ R  +GV      +            
Sbjct: 650 LVSAKVVDKNAKHLLIASHLGIFIKFPLEEVREIGRTTRGVIGIKLNENDFVVGAVVISD 709

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +  +     +           RGG G +  K   ++G  + 
Sbjct: 710 DGNKLLSVSENGLGKQTLAEAYRGQSRGGKGVIGMKLTQKTGNLVG 755



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 6/162 (3%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G     P   +         +  +    ++  +    + D   KLL VS  G
Sbjct: 662 HLLIASHLGIFIKFPLEEVREIGRTTRGVIGIKLNENDFVVGAVVISDDGNKLLSVSENG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSID 676
                        +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI 
Sbjct: 722 LGKQTLAEAYRGQSRGGKGVIGMKLTQKTGNLVGVISVDDENLDLMILTASAKMIRVSIK 781

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            I E  R   GV+L +  D  +    C K  E      S+ +
Sbjct: 782 DIRETGRNASGVKLINTADKVMYVNSCPKEEEPENLETSSAQ 823


>gi|284041477|ref|YP_003391817.1| DNA gyrase subunit alpha [Conexibacter woesei DSM 14684]
 gi|283945698|gb|ADB48442.1| DNA gyrase, A subunit [Conexibacter woesei DSM 14684]
          Length = 883

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/771 (33%), Positives = 411/771 (53%), Gaps = 35/771 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S ++ L   N++  +L   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM+EMG
Sbjct: 1   MSATDQLSGGNIEPRALEEEMRSAYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNEMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +       KS+RIVGEV+GK HPHGD S+YD+LVR+AQ F  R+ L+ GQGNFG++D D 
Sbjct: 61  VQPNRPRAKSSRIVGEVMGKYHPHGDASIYDTLVRMAQDFSMRHLLVDGQGNFGSVDDDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+ ++A  +L+ +D D VDF   Y+ ++ EP+V P++FPNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARLARIATEMLRDIDADTVDFGPNYDGKNQEPLVLPARFPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E   A +A I+NPEI ++ L+++I GPDFPTGGII+     I ++Y  
Sbjct: 181 GMATNIPPHNLRETIAATIAYIENPEIDVDGLMQHIRGPDFPTGGIILG-VGGIRDAYAT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIR 302
           GRG  RV+AR  +E + +G   IVVTE+PYQV+K     LI+KIA+L+  K+IP + D+R
Sbjct: 240 GRGRVRVQARAHIEPLSQGKEAIVVTELPYQVKKGGDGGLIQKIADLVHEKKIPEITDLR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES       +    R + P +++  ++  + M+T F +NM  L    VP+ + L  ++ 
Sbjct: 300 DESDRHGMRFVIELKRDVLPKVVLNKLYKHTPMQTTFGVNMVALVD-NVPKTLSLREVIG 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVS 419
            ++ H+REV+ RR+ + ++  + R  IL+GLLIA  NIDE+IAIIR     +     +V+
Sbjct: 359 RYVDHQREVIVRRTKYELRRAEDRAHILEGLLIAQANIDEVIAIIRRSSDREQARINLVN 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L+E Q +AIL + L  L  LE  +++ E  +L+    ++  +L    +Q   I  E+
Sbjct: 419 RFELSERQAEAILQMTLGRLTALEVDKLRQEHADLMERIRELREILGDEDRQMAIIKEEL 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IR 531
           +E+ + +        RRT     S A+     + +I  + + + I+  G+         R
Sbjct: 479 QEISDAYGNE-----RRTAI---SYAEGEIDIEDLIADQQMVITITKTGYIKSLPLATYR 530

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--A 589
             +   V ++ +  K+GD ++      T D +L  +  GK Y      L       +  A
Sbjct: 531 QQRRGGVGVTGMDMKDGDYIEHLFVTSTHDFLLFFTNRGKVYRSKVYELPEASRTAKGRA 590

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVS 645
           +  ++ L   + + +      +     LL  + KG     E        +  G   +K+ 
Sbjct: 591 LVNILPLREGERVQSVLSTRDFSEAPYLLFATRKGTVKKTELQAYNTPIKADGIIAIKIR 650

Query: 646 SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            ++++  V +V  GD V +V      + FS      M R   GVR      G   +VI  
Sbjct: 651 DDDELVAVRRVDEGDEVIIVSRAGLTVRFSEQDARSMGRDTSGVRGMDV--GDSGEVIAM 708

Query: 704 KIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            I  +    +      + +           RG  G    +     G    +
Sbjct: 709 DIARDDQDLLVITENGFGKRTRIDEYRKTARGAKGVRTIRLTEARGGLAGA 759



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 62/185 (33%), Gaps = 6/185 (3%)

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
              +    +  + A+  ++ D L         D ++++S  G        +  S      
Sbjct: 633 QAYNTPIKADGIIAIKIRDDDELVAVRRVDEGDEVIIVSRAGLTVRFSEQDARSMG-RDT 691

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS 646
           +    +D+  + +++   +      LLV++  G        E     R  KG   ++++ 
Sbjct: 692 SGVRGMDVGDSGEVIAMDIARDDQDLLVITENGFGKRTRIDEYRKTARGAKGVRTIRLTE 751

Query: 647 -EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICF 703
               +   + V     +  + +N  +    +  I    R  +GV++ + ++      I  
Sbjct: 752 ARGGLAGALVVREHQELVFISQNGMVQRTGVRGINRYGRASQGVKVMNVREDDSVRAIAL 811

Query: 704 KICEG 708
            +   
Sbjct: 812 VVESD 816



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 45/152 (29%), Gaps = 2/152 (1%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + +I       V  +    RS+   +  +  +   +   +     A     +L+++ +G
Sbjct: 665 DEVIIVSRAGLTVRFSEQDARSMGRDTSGVRGMDVGDSGEVIAMDIARDDQDLLVITENG 724

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                            + ++ +        +  A V     +L+ +S  G         
Sbjct: 725 FGKRTRIDEYRKTARGAKGVRTIRLTEARGGLAGALVVREHQELVFISQNGMVQRTGVRG 784

Query: 631 IIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
           I    R   G   + V  ++ ++ +  V    
Sbjct: 785 INRYGRASQGVKVMNVREDDSVRAIALVVESD 816


>gi|295691868|ref|YP_003600478.1| DNA gyrase, a subunit [Lactobacillus crispatus ST1]
 gi|295029974|emb|CBL49453.1| DNA gyrase, A subunit [Lactobacillus crispatus ST1]
          Length = 826

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/763 (30%), Positives = 389/763 (50%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  +K V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTGGII+        +Y  G+
Sbjct: 182 TTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYR-AYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V+EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +     P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVD-GAPHFLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIRN          ++SRF L 
Sbjct: 360 QEDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSH 536
            F       +RRT     +    +   + +IEK+ I + +++ G+I+ +           
Sbjct: 480 RFGD-----KRRTEIG--ASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +       +   +  L+
Sbjct: 533 GKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNLL 592

Query: 595 DLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T            L  ++  G       SE       G   L +   +++ 
Sbjct: 593 QLEKGEKVQTVINIPENADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLKDGDELS 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+   G    ++G +    + FS + +  M R   GVR  + ++            +  
Sbjct: 653 NVLTTDGKQNILIGTHLGYAVTFSENDVRAMGRTAAGVRGINLRENDYVVGSGVLGADD- 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +        +  RGG G        ++G    
Sbjct: 712 QVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 6/193 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  K+GD L   L       IL+ +  G A T    ++ +
Sbjct: 623 TVKRTHVSEFSNIRNSGLIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFSENDVRA 682

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                 A    I+L  N  +V + V  +  ++LV+S KG       +E     R GK   
Sbjct: 683 MGRTA-AGVRGINLRENDYVVGSGVLGADDQVLVISEKGYGKRTPAAEYPVKGRGGKGIK 741

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     + +  + + V V+  +  ++ F I+ + +  R   GVRL    DG  
Sbjct: 742 TANITEKNGPLAGVTIINSNNDVMVITTDGIMIRFKIEDVSQTGRSTMGVRLIKVNDGSQ 801

Query: 698 SDVICFKICEGLT 710
              +     E   
Sbjct: 802 VASLTIVPTEEEQ 814


>gi|226303499|ref|YP_002763457.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4]
 gi|226182614|dbj|BAH30718.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4]
          Length = 843

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/775 (29%), Positives = 388/775 (50%), Gaps = 36/775 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D     +    + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM +
Sbjct: 3   DTTLPPDGPQHDRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYD 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      + KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   
Sbjct: 63  NGYRPDRGYVKSARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSRGN 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE R+T +A  +L+ +D + VDF   Y+ +  EP V PS+ PNLL NG++GI
Sbjct: 123 DGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSNGI 182

Query: 184 AVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+ EA          + E ++  ++E I GPDFPT G+IV   + I
Sbjct: 183 AVGMATNIPPHNLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGG-QGI 241

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG  R+R    +EE  +G   IV+TE+PYQV    LI  IAE +   +I  + 
Sbjct: 242 QDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGIS 301

Query: 300 DIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           DI DE S      ++    R     +++ +++  + ++T F  NM  +    VP+ + LD
Sbjct: 302 DIHDESSDRVGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVD-GVPRTLRLD 360

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KP 415
            +++ +  H+ EV+ RR+ + ++    R  IL+GL+ A   +DE+IA+IR        + 
Sbjct: 361 QMIRLYTTHQLEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++    + E Q DAIL ++LR L  LE  +I  EL  +  E   ++ +L   ++Q   +
Sbjct: 421 GLMELLDVDEIQADAILGMQLRRLAALERQKIVDELAEIELEIADLEDILARPERQRAIV 480

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E++E+ + +        RRT       AD     + +I +E + V I+  G+ +    
Sbjct: 481 RDELKEIVDKYGD-----DRRTRII---AADGDVNDEDLIAREDVVVTITETGYAKRTKT 532

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRG 585
                 K     +     K+ D +       T D +L  +T G+ Y   A  L       
Sbjct: 533 DLYRSQKRGGKGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTKGRVYRAKAYELPEASRTA 592

Query: 586 HGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ +  L+    ++ I +      Y+    L++ +  G     + ++  +N   G   +
Sbjct: 593 RGQHVANLLAFQPDERIQSVIQIKTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAI 652

Query: 643 KVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGIS 698
            +  E+++   V  +  D + +V    + + FS     +  M R   GV+   + +G   
Sbjct: 653 NLRGEDELVGAVLCSADDDLLLVSAQGQSIRFSATDEALRPMGRATSGVQGMRF-NGDDE 711

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    + EG   + +    Y++        +  RGG G L  +   + G  + +
Sbjct: 712 LLSLNVVREGTFLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGA 766



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 12/213 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ +  G ++  K    D +        + +  D L  A+     D +LL+S 
Sbjct: 618 YEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSADDDLLLVSA 677

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            G++    A +      G   +    +  N + ++++  V      LLV +S G +    
Sbjct: 678 QGQSIRFSATDEALRPMGRATSGVQGMRFNGDDELLSLNVVREGTFLLVATSGGYSKRTG 737

Query: 628 ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMSR 683
             +     R GK  L +        +   + V  D     +     ++  +  Q+ +  R
Sbjct: 738 MEDYPVQGRGGKGVLTIQYDKKRGTLVGALIVDDDDELYAITSGGGVIRTAAKQVRKAGR 797

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             KGVRL +  +G     I     E        
Sbjct: 798 QTKGVRLMNLGEGDTLLAIARNADEPEELAAET 830


>gi|307947099|ref|ZP_07662434.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4]
 gi|307770763|gb|EFO29989.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4]
          Length = 925

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/849 (31%), Positives = 410/849 (48%), Gaps = 106/849 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     S     V  ++K +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++
Sbjct: 1   MTDQENSTPPGGVPSDIKPISIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E G ++   ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG+
Sbjct: 61  MNENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTE R+ +VA  +L  +D+D VDF++ Y+  +SEPVV P+KFPNLL NG 
Sbjct: 121 IDGDRAAAMRYTECRLEKVAHKLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +AA+A++ NP +++ +L++ + GPDFPTGGII+  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDAAIAVMVNPAMTVAELMDIVPGPDFPTGGIIL-GRSGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +R++  VEE+ +    ++V+EIPYQV KS +IEKIAE +  KRI  + D
Sbjct: 240 SAYESGRGSVVMRSKVDVEEIRKDRNALIVSEIPYQVNKSSMIEKIAEAVRDKRIEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES      V+    R   PD+++  ++  S ++T F  NM  L+ G  P+ + L  I
Sbjct: 300 IRDESDRSGMRVVIELKRDAVPDVVLNQLYRYSQLQTSFGCNMVALN-GGKPEQLNLPDI 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------- 412
           LK +++ R EV+ RR+ F ++    R  IL GL IA  NIDE+I +IR            
Sbjct: 359 LKAFISFREEVVQRRTKFLLKKARDRAHILVGLGIAVANIDEVIHLIRTAPDPATARAQL 418

Query: 413 ---------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L+E Q  AIL+LRL+ L  L   +I  EL
Sbjct: 419 MERDWPARDVEPLIRLIDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTALGRDEIADEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             + AE      +L S  +  + +  E+ E+KE F+             E+         
Sbjct: 479 SKIGAEISDFLDILRSRARIQDIVRGEMLEIKEEFATPRKT--------EIVDGGADFDD 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+I+          +      S +  K+ D +     A+T   +
Sbjct: 531 EDLIQREDMVVTVSHNGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPV 590

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G  Y +    L        G+A+  ++ L   + I +               ++
Sbjct: 591 LFFSSRGICYKMKVWRLPLGGPISRGKALINMLPLEQGEQISSIMPLPEDEESWANLDVM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
             + +G     + S+     R GK  +K+   + +  V   +  D V +     + + F 
Sbjct: 651 FSTVRGTVRRNKLSDFTQINRNGKIAMKLEDGDGIVNVATCSEHDDVMLTTAAGQCIRFP 710

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICF----------------------------- 703
           +  +     R   GVR     DG     +                               
Sbjct: 711 VGDVRVFAGRNSVGVRGIRLADGDKVISMQILHHMDAEAEERTAFLKMSRALRGEADENA 770

Query: 704 ------KICEGLT-------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                  +  GL+              +  +   Y +  +     +  RGG G       
Sbjct: 771 GSDETGAVDAGLSQERYAEMSAAEQIILTLSENGYGKRTSSFEYRVTGRGGKGITAMAVT 830

Query: 745 PRSGKFLSS 753
            R+G  +SS
Sbjct: 831 ERNGGLVSS 839



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 9/118 (7%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVTG-DHVAVVG 665
           +   +L +S  G        E     R  KG T + V+     +     V   D + +V 
Sbjct: 793 AEQIILTLSENGYGKRTSSFEYRVTGRGGKGITAMAVTERNGGLVSSFPVEESDQIMLVT 852

Query: 666 ENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG----ISDVICFKICEGLTWIDSAGRS 718
              +L+   +D I    R  +GV +    DG     +  +      E +  ++  G  
Sbjct: 853 NGGQLIRCPVDGIRIAGRATQGVIVFKTADGENVVAVEGISEVDDEEDVDAVEDGGEG 910


>gi|255535202|ref|YP_003095573.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10]
 gi|255341398|gb|ACU07511.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10]
          Length = 884

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/757 (29%), Positives = 388/757 (51%), Gaps = 22/757 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  + +       K
Sbjct: 6   ERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLNVFSNRKHLK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RYTEA
Sbjct: 66  SARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ ++++ IL  +D+D VDF++ +++  +EP V P+K P LL NGTSGIAVGMAT++  H
Sbjct: 126 KLKKISDEILADLDKDTVDFQNNFDDSMTEPTVMPTKIPTLLVNGTSGIAVGMATNMAPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A +A IDN EI+I++L+++II PDFPTGG I+   + + +++  GRG   +RA
Sbjct: 186 NLSESIDAIVAYIDNKEITIDELMKHIIAPDFPTGG-IIYGYDGVRDAFHTGRGRIVLRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEVG     I+VTEIPYQV K+ +I + AEL+  ++IP + +IRDES      +++
Sbjct: 245 KINFEEVG-NRSAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIYEIRDESDRQGLRIVY 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                  P++++  ++  + ++T F +N   L     P+ + L  I+  ++ HR EV+ R
Sbjct: 304 ELKHDAIPNVVLNMLYKYTSLQTSFSVNNIALVK-GRPEQLNLKNIIHHFVDHRHEVVIR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAY------LNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ F ++    R  IL+G +              II    N  + K  ++  F L++ Q 
Sbjct: 363 RTEFELKKAKERAHILEGFMKVIGTQDDLDKAIAIIRHSSNPAEAKDGLMKEFDLSDLQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+LRL  L  +E  +I++E D ++      + +L +  +++  I  E+ E+KE +  
Sbjct: 423 QAILDLRLARLTGMELDKIRAEYDEIMNLIRDFEDILANESRRFEIIKAELIEMKEKYGD 482

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   +             +  +       +  ++    +      V   A   ++ 
Sbjct: 483 ERRSEIDYSGGEMSIEDLIPDEKVVLTISHAGYIKRTSLSEYKVQTRGGVGNRAATTRDE 542

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D L+  + A     +L  +  GK + L    +  G    +  A+Q LI++  +  I    
Sbjct: 543 DFLEYIVAATNHQYMLFFTEKGKCFWLRVFEIPEGSKISKGRAVQNLINIEPDDKIKAYI 602

Query: 607 VYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
             +            +++V+  G                G   +++   +++      +G
Sbjct: 603 RTNDLKDAEYINQMNVVMVTKNGTIKKTSLEAYSRPRTNGVNAIEIRDNDQLLGARLTSG 662

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKICEGLTWIDSA 715
           D  + +  +N K + F  ++   + RG  GVR  S +D   +  +I     E  T +  +
Sbjct: 663 DSEIMIATKNGKCIRFPEEKARAVGRGSIGVRGISLEDDDEVIGMIVVNDVENETVLVVS 722

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG G +      ++G  ++
Sbjct: 723 EKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGNLIA 759



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 81/209 (38%), Gaps = 10/209 (4%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           ++  A+       ++  +  T+  ++       +++ V+   +   +   L  A      
Sbjct: 606 DLKDAEYINQMNVVMVTKNGTIKKTSLEAYSRPRTNGVNAIEIRDNDQ--LLGARLTSGD 663

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVS 618
             I++ + +GK    P     +       ++  I L  + +++   V +      +LVVS
Sbjct: 664 SEIMIATKNGKCIRFPEEKARAVGRGSIGVRG-ISLEDDDEVIGMIVVNDVENETVLVVS 722

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFS 674
            KG        +     R GK  + ++  EK   +  +  VT +  + ++ ++   +  S
Sbjct: 723 EKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGNLIAIQNVTDEDGLMIINKSGVAIRMS 782

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++++  M R  +GV++ + K       I 
Sbjct: 783 MNEMRVMGRNTQGVKVINLKGNDSIAAIA 811


>gi|322513992|ref|ZP_08067067.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae
           ATCC 25976]
 gi|322120218|gb|EFX92176.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae
           ATCC 25976]
          Length = 895

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/820 (30%), Positives = 389/820 (47%), Gaps = 80/820 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           +  KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  SHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I+N EISIE+L+ +I GPDFPTG  I+  R+ I E+YR GRG  
Sbjct: 182 IPPHNLNEVLDGCLAYIENEEISIEELMRFIPGPDFPTGA-IINGRKGIEEAYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +   
Sbjct: 241 YVRAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRRE
Sbjct: 301 SIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPKVLNLKQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IRN                     
Sbjct: 360 VVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V   ++ L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYRA 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +L+S ++    I  E+ +VK  F           +         A     
Sbjct: 480 LLTEIGELLHILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L  +T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVVNTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V    G+  + +     +++ F+   +  M R
Sbjct: 660 KVSLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMGR 719

Query: 684 -GKGVRLQSYK-----------------------------DGGISDVICFKICEGLTWID 713
              GVR                                  D      +     EG   + 
Sbjct: 720 TATGVRGIKLATTEISSEEIEDAEIVEIENEEADESSVSLDTDRVVSLVIPRTEGD-ILT 778

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +        +  R   G +  K   R+GK +++
Sbjct: 779 VTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLV 653
               +V+  +  +   +L V+  G        E    +R  K  + +   E+    +  V
Sbjct: 760 DTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAV 819

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
                D + ++ +   L+   + ++  + R  +GVR+    D      +
Sbjct: 820 QVEKADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSV 868


>gi|210134904|ref|YP_002301343.1| DNA gyrase subunit A [Helicobacter pylori P12]
 gi|210132872|gb|ACJ07863.1| DNA gyrase subunit A [Helicobacter pylori P12]
          Length = 826

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/766 (33%), Positives = 411/766 (53%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +++    +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP  +++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRMDEIIDALVHVLENPNAALDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--- 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P+    +      
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERFI 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILKSEDRLNGVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE FS       RRT   E   + +    + +I  EP+ V +S +G+++           
Sbjct: 478 KEQFSSP-----RRTEIQE---SYENIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  +    E D ++    A+T D +L ++  G+ Y L    +        G+AI  
Sbjct: 530 RGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  ++ I+       +     L   +  G       SE  +N   G   + +   ++
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDE 649

Query: 650 MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +     V  +  H+ +       + F ++ + E+ R  +GV      +            
Sbjct: 650 LVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVIGIKLNENDFVVGAVVISG 709

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +  +     +           RGG G +  K   ++G  + 
Sbjct: 710 DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVG 755



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 7/157 (4%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G     P  ++         +  +    ++  +    +     KLL VS  G
Sbjct: 662 HLLIASHLGIFIKFPLEDVREIGRTTRGVIGIKLNENDFVVGAVVISGDGNKLLSVSENG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSID 676
                        +R GK  + +   +K   +  ++ V  +   + ++  + K++  SI 
Sbjct: 722 LGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVGIISVDDENLDLMILTASAKMIRVSIK 781

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
            I E  R   GV+L +  D  +  V      E    +
Sbjct: 782 DIRETGRKTSGVKLINTAD-KVMYVNSCPKEEESEIL 817


>gi|257462461|ref|ZP_05626873.1| DNA gyrase subunit A [Fusobacterium sp. D12]
 gi|317060118|ref|ZP_07924603.1| DNA gyrase subunit A [Fusobacterium sp. D12]
 gi|313685794|gb|EFS22629.1| DNA gyrase subunit A [Fusobacterium sp. D12]
          Length = 810

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/757 (32%), Positives = 407/757 (53%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N+    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKK
Sbjct: 2   SNISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++   +L+ +D++ +DFR  +++   EP V PSK P+LL NG++GIAVGMAT+IP H
Sbjct: 122 RMSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ + +L LIDNP+IS  +L+EYI GPDFPTGGII   ++ I ++Y  GRG  RVR 
Sbjct: 182 NLGELVDGSLQLIDNPDISDLELMEYIQGPDFPTGGIID-GKKGIRDAYLTGRGKIRVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G + I++ EIPYQ+ K+ LIE+IA L+  K+I  + D+RDES  +   V+ 
Sbjct: 241 KVKIEENKNGKFFIIIEEIPYQLNKATLIERIANLVKEKKITGIVDLRDESNREGIRVVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  +++++ F + M  L    VP+++ L  +L E++ HR +V+ R
Sbjct: 301 ELKKGEEPELVLNKLYKYTELQSTFGVIMLALV-NNVPKILTLKQMLSEYIGHRFQVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAI 431
           R+ F +    +R  IL+G  IA  NI+ II +IR+          ++ +++ TE Q  +I
Sbjct: 360 RTLFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFTEIQAKSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++++E   L     ++  +L+   + ++ +  E+ EVKE++     
Sbjct: 420 LDMRLQRLTGLEREKVEAEYQILEKLILELQDILSHDSKIYDIMKKELLEVKEVYGD--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT   E        L + +I+ E + +  +N+G+I+                +S L
Sbjct: 477 --NRRTHIEE---ERMEILPEDLIKDEEMIITCTNKGYIKRIEANKYKSQNRGGKGVSGL 531

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-- 601
           +  + D +   L A   D +++ +  GK Y +    L           +   L   ++  
Sbjct: 532 NTIDDDVVDKILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLISNILRIGEEEK 591

Query: 602 ---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
              I+   ++D   +L+ V+ +G        E       G   +K   E+ +  V  V  
Sbjct: 592 IRAIIKTRIFDKEKELIFVTKQGIVKKTSLEEFKNINTGGLIAIKFKEEDDLIYVGLVEA 651

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + V +       + F  D +    R   GV+    ++            + +  +   
Sbjct: 652 SDNEVFIATRRGFAVRFPNDNVRPTGRNTMGVKGIELREKDEVVSALLIKEKEMDILTIT 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +           RGG G +  +   ++G  +S
Sbjct: 712 ENGYGKRTRLDEYPSHNRGGKGVINLRCNEKTGNIVS 748



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 6/155 (3%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           + + +  G A   P  N+     +   ++ +     ++ +    + +    +L ++  G 
Sbjct: 656 VFIATRRGFAVRFPNDNVRPTGRNTMGVKGIELREKDEVVSALLIKEKEMDILTITENGY 715

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQI 678
                  E  ++ R GK  + +   EK   +V V      + +  +  N  ++   +  I
Sbjct: 716 GKRTRLDEYPSHNRGGKGVINLRCNEKTGNIVSVLSAFDEEELVCITSNGVIIRTPMHSI 775

Query: 679 PEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTW 711
              SR  +GV +     D  ++ +   K  E    
Sbjct: 776 SRFSRAAQGVIIMKVASDEKVASITRIKAEEKEEI 810


>gi|317009283|gb|ADU79863.1| DNA gyrase subunit A [Helicobacter pylori India7]
          Length = 826

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/766 (33%), Positives = 413/766 (53%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N++    +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQNNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L  +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLCLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE FS       RRT   E   + +    + +I  EP+ V +S +G+++           
Sbjct: 478 KEQFSSP-----RRTEIQE---SYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  +    E D ++    A+T D +L ++  G+ Y L    +        G+A+  
Sbjct: 530 RGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  ++ I+       +     L   +  G       SE  +N   G   + +   ++
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDE 649

Query: 650 MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +     V  +  H+ +       + F ++ + E+ R  +GV      +            
Sbjct: 650 LVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISD 709

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +  +     +           RGG G +  K   ++G  + 
Sbjct: 710 DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVG 755



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G     P  ++         +  +    ++  +    + D   KLL VS  G
Sbjct: 662 HLLIASHLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISDDGNKLLSVSENG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSID 676
                        +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI 
Sbjct: 722 LGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVGVISVDDENLDLMILTASAKMIRVSIK 781

Query: 677 QIPEMSR-GKGVRLQSYKD 694
            I E  R   GV+L +  D
Sbjct: 782 DIRETGRNASGVKLINTAD 800


>gi|228473049|ref|ZP_04057806.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624]
 gi|228275631|gb|EEK14408.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624]
          Length = 836

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/770 (30%), Positives = 404/770 (52%), Gaps = 43/770 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    A KK
Sbjct: 5   EKLIPINIEDQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRMAQWWNMRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++AE +L  +D++ VD    +++   EP V P++ PNLL NG+SGIAVGMAT++P H
Sbjct: 125 RMRKMAEDMLIDIDKETVDHSLNFDDTLLEPTVLPTRIPNLLVNGSSGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A + N +I+I++L+EYI  PDFPTGG I+   + + E+++ GRG   +RA
Sbjct: 185 NLAEVVDGIIAYLGNQDITIDELMEYIKAPDFPTGG-IIYGYDGVREAFKTGRGRVVIRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV  G  CIVVTE+PYQV    + E+ + L+   ++  L DI D++ +    +++
Sbjct: 244 KAHFEEVN-GRDCIVVTEVPYQVNPETMREQTSNLVKEGKLEGLADIVDQTGKGGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +   P++++ ++F  + +++ F +N   L     PQ + L  ++  ++ HR +V++R
Sbjct: 303 ELKKDAIPNVVLNNLFKHTALQSSFSVNNIALV-NGRPQQLNLKDLIYHFVEHRHDVVYR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R+ IL+G +        + + I IIR  DKPK  +++ F LTE Q +AI
Sbjct: 362 RTEYELKKAKERIHILEGFMKVMATEDTMGKAIEIIRFHDKPKEDLMTEFELTEIQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR + KL   Q K E + LLA+   ++ +L   +++   I  E+ E+K  +     
Sbjct: 422 LALQLRRINKLLILQTKEEYEQLLAQIIDLEDILARKERRTEIIKEELLEIKSKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RR+       A      + +I  + + + ISN G+I+    +             A 
Sbjct: 480 ---RRSVI---EYAGGDISIEDIIPDDQVVITISNAGYIKRTSVNEYKTQARGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             ++ D ++          +L  +  GK + L    +  G  + +  AIQ LI++  +  
Sbjct: 534 ATRDKDFIEHLFIGTNHQYMLFFTEKGKCFWLRVYEIPEGGKNTKGRAIQNLINIEPDDL 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y ++  +++ + KG        +     + G   + +  ++++   
Sbjct: 594 VKAVICTHDLKEKDYTNSHYVIMATKKGIIKKTSLEQYSRPRQNGIVAITIKEDDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGL 709
              +G+  + +  ++ K + F  D++  + R G GVR  S       +  +I  +     
Sbjct: 654 RLTSGNSQIMLAVKSGKAIRFPEDKVRAVGRSGSGVRGISLDSDKDEVIGMIAIENPLEE 713

Query: 710 TWIDSAGRSYNRSENDLL-------GWLGKRGGVGSLVPKGFPRSGKFLS 752
           T +  +   Y +               +  RGG G        ++G  ++
Sbjct: 714 TVLVVSENGYGKRTFIDEPETGEAVYRITNRGGKGVKTISITEKTGNLVA 763



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 57/486 (11%), Positives = 137/486 (28%), Gaps = 32/486 (6%)

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
               V  R     +    +  V        +++    K A+  I      ++ +  E   
Sbjct: 331 NIALVNGRPQQLNLKDLIYHFVEHRHDVVYRRTEYELKKAKERIHILEGFMKVMATEDTM 390

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
              I +   +     DL+ E        E    L +  ++   + Q       L   +  
Sbjct: 391 GKAIEIIRFHDKPKEDLMTEFELTEIQAEAILALQLRRINKLLILQTKEEYEQLLAQIID 450

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             ++L R+        +  +EI         ++ E      + +   P      +++   
Sbjct: 451 LEDILARKERRTEIIKEELLEIKSKYGDERRSVIEYAGGDISIEDIIPDDQVVITISNAG 510

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC----EIREVK 483
                ++      +      +        +  +   +  + +             +R  +
Sbjct: 511 YIKRTSVNEYK-TQARGGVGQKASATRDKDFIEHLFIGTNHQYMLFFTEKGKCFWLRVYE 569

Query: 484 EIFSKSTDLGRRRTTFCEVSRA-------DKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
                    GR       +              L++         ++ + +G I+     
Sbjct: 570 IPEGGKNTKGRAIQNLINIEPDDLVKAVICTHDLKEKDYTNSHYVIMATKKGIIKKTSLE 629

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                    + A+  KE D L  A       +I+L    GKA   P   + +    G  +
Sbjct: 630 QYSRPRQNGIVAITIKEDDELLEARLTSGNSQIMLAVKSGKAIRFPEDKVRAVGRSGSGV 689

Query: 591 QLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESE-------IIANTRKGKTF 641
           + +   +   +++     ++     +LVVS  G        E            R GK  
Sbjct: 690 RGISLDSDKDEVIGMIAIENPLEETVLVVSENGYGKRTFIDEPETGEAVYRITNRGGKGV 749

Query: 642 ----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
               +   +   + +   +  D + ++ ++   +   +  +  M R  +GVRL + K   
Sbjct: 750 KTISITEKTGNLVAIKSVLEEDDLMIINKSGMAIRLPVSGLRVMGRATQGVRLINIKGND 809

Query: 697 ISDVIC 702
               + 
Sbjct: 810 SIAAVA 815


>gi|254779317|ref|YP_003057422.1| DNA gyrase subunit A [Helicobacter pylori B38]
 gi|254001228|emb|CAX29200.1| DNA gyrase subunit A [Helicobacter pylori B38]
          Length = 827

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/766 (33%), Positives = 410/766 (53%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDRLVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A   +++NP   ++++LE++ GPDFPTGG I+  +  IVE+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGG-IIYGKAGIVEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L  +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLCLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ E+
Sbjct: 418 LSEIQSKAILEMRLQRLTCLERDKIKEEYQNLLELIADLNGILKSEDRLNEVVKIELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE FS       RRT   E   + +    + +I  EP+ V +S +G+++           
Sbjct: 478 KEQFSSP-----RRTEIQE---SYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  +    E D ++    A+T D +L ++  G+ Y L    +        G+A+  
Sbjct: 530 RGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  ++ I+       +     L   +  G       SE  +N   G   + +   ++
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSCGVRAIVLDEGDE 649

Query: 650 MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +     V  +  H+ +       + F ++ + EM R  +GV      +            
Sbjct: 650 LVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVISD 709

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +  +     +           RGG G +  K   ++G  + 
Sbjct: 710 DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVG 755



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 6/162 (3%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G     P  ++     +   +  +    ++  +    + D   KLL VS  G
Sbjct: 662 HLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVISDDGNKLLSVSENG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSID 676
                        +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI 
Sbjct: 722 LGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVGVISVDDENLDLMILTASAKMIRVSIK 781

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            I E  R   GV+L +  D  +    C K  E      S+ +
Sbjct: 782 DIRETGRNASGVKLINTADKVMYVNSCPKEEEPENLETSSAQ 823


>gi|254475270|ref|ZP_05088656.1| DNA topoisomerase IV, A subunit [Ruegeria sp. R11]
 gi|214029513|gb|EEB70348.1| DNA topoisomerase IV, A subunit [Ruegeria sp. R11]
          Length = 782

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/781 (49%), Positives = 518/781 (66%), Gaps = 37/781 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           VD+    ++     V    LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM+
Sbjct: 5   VDDQDTPDSPASGEVLE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMN 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 64  RLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNID 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT +AE +L+G++E+AVDFRD Y+   +EP V P+ FPN+LANG SG
Sbjct: 124 GDNPAASRYTEARMTFIAEAMLEGLNENAVDFRDNYDGRLTEPAVLPATFPNILANGASG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A + LI  P+   + LL Y+ GPDFPTGGIIVE +E+I ++
Sbjct: 184 IAVGMATNIPPHNIAELIDACIHLIRTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKA 243

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG FR+R +  VE++GRG W IVVTEIPYQVQKS+LIEKIAELI  K++P+L D+R
Sbjct: 244 YSTGRGSFRLRCQHEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVR 303

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESA+D+RI+L PK++++DP++LM  +F  SD+E RF LNMNVL  G  P+V  +  +L+
Sbjct: 304 DESADDIRIILEPKSKNVDPEVLMNMMFRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLR 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            +L HRR+VL RRS  RM  ID R+E+L+G +IA+LN+D +I IIR +D PK  ++    
Sbjct: 364 AFLDHRRDVLQRRSQHRMDKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMREDW 423

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 LTE Q +AILN+RLRSLR+LEE ++  E D L  E+  
Sbjct: 424 DRDHPRAYSEAEYVSPGEGVGELTEVQAEAILNMRLRSLRRLEEIELTRERDALREERAG 483

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL S + QW++I  ++++ K+ F K    G RRT F E +   +    +AMI++EPI
Sbjct: 484 LVELLGSEELQWSRITEQLKDTKKQFGKDYAGGARRTRFAE-AGEVEDVPLEAMIDREPI 542

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+  ++G+ YT+ A NL
Sbjct: 543 TVVCSQMGWIRAMTGHIDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSAANL 602

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L++DL +  +IV   +++   +LLV S  GN FI  E +I+A TR GK 
Sbjct: 603 PGGRGMGEPLRLMVDLPNEVEIVDILIHNPDGRLLVASDAGNGFICAEKDIVAQTRSGKQ 662

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------- 693
            L V  ++K K+ + V GDHVAVV EN K L+FS++++PE+SRGKGVRLQ Y        
Sbjct: 663 VLNVKDDDKAKICIPVEGDHVAVVSENGKFLVFSVEEMPELSRGKGVRLQKYNMARGKQG 722

Query: 694 ----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               DGG+SD+  F   EGL W    G    R E DL  WLGKR  VG   P GFPR+ K
Sbjct: 723 ALELDGGLSDITTFNWDEGLKW--EMGGGKTRHEGDLTEWLGKRASVGKRPPHGFPRNYK 780

Query: 750 F 750
           F
Sbjct: 781 F 781


>gi|229491128|ref|ZP_04384956.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121]
 gi|229321866|gb|EEN87659.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121]
          Length = 843

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/775 (29%), Positives = 388/775 (50%), Gaps = 36/775 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D     +    + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM +
Sbjct: 3   DTTLPPDGPQHDRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYD 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      + KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   
Sbjct: 63  NGYRPDRGYVKSARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSRGN 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE R+T +A  +L+ +D + VDF   Y+ +  EP V PS+ PNLL NG++GI
Sbjct: 123 DGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSNGI 182

Query: 184 AVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+ EA          + E ++  ++E I GPDFPT G+IV   + I
Sbjct: 183 AVGMATNIPPHNLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGG-QGI 241

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG  R+R    +EE  +G   IV+TE+PYQV    LI  IAE +   +I  + 
Sbjct: 242 QDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGIS 301

Query: 300 DIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           DI DE S      ++    R     +++ +++  + ++T F  NM  +    VP+ + LD
Sbjct: 302 DIHDESSDRVGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVD-GVPRTLRLD 360

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KP 415
            +++ +  H+ EV+ RR+ + ++    R  IL+GL+ A   +DE+IA+IR        + 
Sbjct: 361 QMIRLYTTHQLEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++    + E Q DAIL ++LR L  LE  +I  EL  +  E   ++ +L   ++Q   +
Sbjct: 421 GLMELLDVDEIQADAILGMQLRRLAALERQKIVDELAEIELEIADLEDILARPERQRAIV 480

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E++E+ + +        RRT       AD     + +I +E + V I+  G+ +    
Sbjct: 481 RDELKEIVDKYGD-----DRRTRII---AADGDVNDEDLIAREDVVVTITETGYAKRTKT 532

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRG 585
                 K     +     K+ D +       T D +L  +T G+ Y   A  L       
Sbjct: 533 DLYRSQKRGGKGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTKGRVYRAKAYELPEASRTA 592

Query: 586 HGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ +  L+    ++ I +      Y+    L++ +  G     + ++  +N   G   +
Sbjct: 593 RGQHVANLLAFQPDERIQSVIQIKTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAI 652

Query: 643 KVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGIS 698
            +  E+++   V  +  D + +V    + + FS     +  M R   GV+   + +G   
Sbjct: 653 NLRGEDELVGAVLCSAEDDLLLVSAQGQSIRFSATDEALRPMGRATSGVQGMRF-NGDDE 711

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    + EG   + +    Y++        +  RGG G L  +   + G  + +
Sbjct: 712 LLSLNVVREGTFLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGA 766



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 12/213 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ +  G ++  K    D +        + +  D L  A+     D +LL+S 
Sbjct: 618 YEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSAEDDLLLVSA 677

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            G++    A +      G   +    +  N + ++++  V      LLV +S G +    
Sbjct: 678 QGQSIRFSATDEALRPMGRATSGVQGMRFNGDDELLSLNVVREGTFLLVATSGGYSKRTG 737

Query: 628 ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMSR 683
             +     R GK  L +        +   + V  D     +     ++  +  Q+ +  R
Sbjct: 738 MEDYPVQGRGGKGVLTIQYDKKRGTLVGALIVDDDDELYAITSGGGVIRTAAKQVRKAGR 797

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             KGVRL +  +G     I     E        
Sbjct: 798 QTKGVRLMNLGEGDTLLAIARNADEPEELAAET 830


>gi|213966249|ref|ZP_03394433.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46]
 gi|213951101|gb|EEB62499.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46]
          Length = 867

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/782 (29%), Positives = 391/782 (50%), Gaps = 41/782 (5%)

Query: 1   MGVDNISNSNTL----VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           M  DN ++ ++     +   V+ + +   ++  Y+ YA+S I  RA+P++RDG KPVHRR
Sbjct: 1   MSDDNNNDGSSFGSGVLGHQVRPIDINEEMQSSYIDYAMSVIVGRALPEIRDGLKPVHRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM + G      + KSA+ V + +G  HPHGD ++YD++VR+AQP+  RYPL+ GQG
Sbjct: 61  ILYAMFDNGYRPERGYVKSAKPVSDTMGNYHPHGDSAIYDTMVRMAQPWSMRYPLVDGQG 120

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+   D  AA RYTEAR+T +A  +++ + E+ VDF+  Y+   +EPV+ PS+ P LL
Sbjct: 121 NFGSRGDDGPAAMRYTEARLTPLAMEMVRDIRENTVDFQPNYDGRTTEPVILPSRVPQLL 180

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGII 232
            NG+ GIAVGMAT+IP HN++E+ +A    +DNP    + +++ ++E I GPDFPT   I
Sbjct: 181 MNGSGGIAVGMATNIPPHNLREVADAINWCLDNPDADEKTTLDAVMERIKGPDFPTAAQI 240

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
           V   + I E+Y  GRG  R+R    +E+ G     IV+TE+PYQV   R+I  IA+ +  
Sbjct: 241 V-GDKGIKEAYTTGRGSIRMRGVTSIEQEG-TRQSIVITELPYQVNPDRMIANIADQVKD 298

Query: 293 KRIPLLEDIRDESAEDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            R+  +  I DES       ++    R   P +++ +++  S ++T F  NM  +    V
Sbjct: 299 GRLQGIASIDDESDLKWGMRIVVKLKRDAVPRVVLNNLYKHSQLQTSFGANMLAIVD-GV 357

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+ + +D ++  ++AH+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR   
Sbjct: 358 PRTLRIDQMVTLYVAHQIEVIVRRTQYRLDEKEKRAHILRGLVKALDMLDEVIALIRRSA 417

Query: 412 KPKPVMVSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                         + E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L + 
Sbjct: 418 TVDTARTGLMGLLDIDEIQADAILAMQLRRLAALERQKIIDELAEIELEIADLKDILANP 477

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +Q   +  E+ EV E +        RRT       A+    ++ +I +E + V I++ G
Sbjct: 478 DRQRAIVKEELGEVVEKYGD-----DRRTQIV---AAEGDVTEEDLIARENVVVTITSTG 529

Query: 529 WIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           + +  K  +          +     K+ D ++      T D IL  +  G+ Y L A  L
Sbjct: 530 YAKRTKVDAYKAQRRGGKGVRGADLKQDDIVRHFFVCSTHDWILFFTNKGRVYRLKAYEL 589

Query: 581 LSGRG--HGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT 635
                   G+ +  L++    + I        Y  +  L++ +S+G        +  +  
Sbjct: 590 PEATRAARGQHVANLLEFQPEERIAEVLQIQSYQDSPYLVLATSEGKVKKSRLEDYESAR 649

Query: 636 RKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQS 691
             G   + +   + +      +  D + +V E  + + F+     +  M R   GV+   
Sbjct: 650 SAGLIAINLREGDSLIGARLCSADDDLLLVSERGQAIRFTASDDALRPMGRATAGVQGMR 709

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +K G    +    + E    + +    + +           RGG+G L  K  P+ G  +
Sbjct: 710 FK-GDDKLLSMVVVEEEHNLLVATTGGFGKKTKLSEYTPQNRGGMGVLTLKYDPKRGPLM 768

Query: 752 SS 753
            +
Sbjct: 769 GA 770



 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 6/189 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR 584
                    + S  L A++ +EGDSL  A      D +LL+S  G+A    A +      
Sbjct: 639 KSRLEDYESARSAGLIAINLREGDSLIGARLCSADDDLLLVSERGQAIRFTASDDALRPM 698

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G   A    +    +  +++  V +    LLV ++ G     + SE     R G   L +
Sbjct: 699 GRATAGVQGMRFKGDDKLLSMVVVEEEHNLLVATTGGFGKKTKLSEYTPQNRGGMGVLTL 758

Query: 645 SSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD 699
             + K   +   + V  D  +  V     ++  ++++I   SR  KGVRL +  DG    
Sbjct: 759 KYDPKRGPLMGALVVDNDDEIFAVTSAGDIIRTNVNEIRATSRATKGVRLVNLADGVELL 818

Query: 700 VICFKICEG 708
            I   + + 
Sbjct: 819 AIDRNVEDE 827


>gi|301630199|ref|XP_002944211.1| PREDICTED: DNA gyrase subunit A-like, partial [Xenopus (Silurana)
           tropicalis]
          Length = 813

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/731 (31%), Positives = 379/731 (51%), Gaps = 29/731 (3%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
            RDG KPVHRR+++AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F
Sbjct: 9   ARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDF 68

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R+ L+ GQGNFG++DGDSAAA RYTE R++++A  +L  + ++ VDF   Y+  + EP
Sbjct: 69  SLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKIAHEMLADIAKETVDFGPNYDGSEQEP 128

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
           +V P++ PNLL NG++GIAVGMAT+IP HN+ E+ +A L L+ +PE SI+ L+E I  PD
Sbjct: 129 LVLPTRLPNLLVNGSAGIAVGMATNIPPHNLNEVVDACLHLLRHPEASIDALMEIIPAPD 188

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIE 284
           FPT G I+     + + YR GRG   +RA+   E++ RG    I+V E+PYQV K  L E
Sbjct: 189 FPTAG-IIYGINGVKDGYRTGRGKVVMRAKVHFEDIDRGQRQAIIVDELPYQVNKKTLQE 247

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           ++AEL+  K++  +  I+DES +    ++    R   P++++ +++  + ++  F +NM 
Sbjct: 248 RMAELVHEKKLEGISHIQDESDKSGMRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMV 307

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
            L     P++  L  ++  +L HRREV+ RR+ F ++    R  +L+GL +A  NIDE I
Sbjct: 308 ALVD-GQPRLCNLKELIAVFLQHRREVVTRRTVFELRKARDRGHVLEGLAVALANIDEFI 366

Query: 405 AIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
            IIR    P      ++S + L++ Q   IL +RL+ L  LE+ +I +E   ++A  E +
Sbjct: 367 RIIRESPTPPVAKAELMSLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKEVMAHIEDL 426

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L   ++    I  E+  V+E F ++    RR     E+  + +    + +I    + 
Sbjct: 427 LDILAKPERVSTIIGEELTAVREEFGQTKLGARRS----EIEHSAQDLSTEDLITPTDMV 482

Query: 522 VVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +S+ G+         R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 483 VTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCFSNRGRLY 542

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTCKLLVVSSKGNAF 624
            L    +   S    G  I  +  L   + I            +     + + +S G   
Sbjct: 543 WLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRSFPKDRYVFMATSMGTVK 602

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
                E     + G   + +   + +       G H V +  +  K + F  + +  + R
Sbjct: 603 KTALDEFSNPRKAGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVRFDENDVRPLGR 662

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR  + +D      +     E  + + +    Y +  + +      RG  G +  +
Sbjct: 663 QARGVRGMTLEDSQSVIAMLVAEDESQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQ 722

Query: 743 GFPRSGKFLSS 753
              R+GK +++
Sbjct: 723 QSERNGKVVAA 733



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 79/262 (30%), Gaps = 14/262 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G +   
Sbjct: 525 IANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMF---------PLQEGEKINV 575

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++   ++  +   +        +               + A++  +GD L  A    
Sbjct: 576 VLPLTGDMRSFPKDRYVFMATSMGTVKKTALDEFSNPRKAGIIAVNLDDGDYLIGAALTD 635

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               ++L S  GKA      ++         ++ +   +    I      D +  +L  +
Sbjct: 636 GQHDVMLFSDGGKAVRFDENDVRPLGRQARGVRGMTLEDSQSVIAMLVAEDESQSVLTAT 695

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFS 674
             G        E   + R  K  + +   E+   VV  T     D + ++ +   L+   
Sbjct: 696 ENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRTR 755

Query: 675 IDQIPEMSRG-KGVRLQSYKDG 695
           + +I E+ R  +GV L +  +G
Sbjct: 756 VAEIRELGRATQGVTLIALDEG 777



 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/104 (10%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
            +  +L  + +G                 + +  +     N  +V A +  +  ++++++
Sbjct: 687 ESQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLIT 746

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
             G       +EI    R   G T + +     +  + ++  + 
Sbjct: 747 DTGVLVRTRVAEIRELGRATQGVTLIALDEGATLSGLQRIVEND 790


>gi|257789785|ref|YP_003180391.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243]
 gi|257473682|gb|ACV54002.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243]
          Length = 932

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/760 (34%), Positives = 402/760 (52%), Gaps = 36/760 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V++  L   ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM+E G        KSA
Sbjct: 86  VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGD +VYD++VRLAQPF  R PL+ G GNFG+IDGD AAA RYTE+R+
Sbjct: 146 RTVGDVIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VA  +L+ +D++ VDF+  Y+E   EP V P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A   ++DNP+++ E+L++ + GPDFPTGG I+  ++ I ++Y  GRG   VRA+ 
Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGG-IIMGKKGIRDAYETGRGSLTVRAKC 324

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VEE   G   IVVTEIPYQV + RL+EK+ EL+  K++P + +I D +      ++   
Sbjct: 325 KVEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDL 384

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +   P +++  ++  + ++  F + M  L     P+V+ L  +L  ++AH+ EV+ RR+
Sbjct: 385 KKDAIPQVVLNKLYKHTQLQVGFGVIMLSLVD-GAPRVLSLKEMLHYYIAHQEEVIVRRT 443

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILN 433
            + +   + R  IL+GL+IA  NIDE+I IIR+    K     M  RF LT+ Q  AIL 
Sbjct: 444 RYELAKAEERAHILEGLIIALDNIDEVIHIIRSSQTDKEAAERMTERFGLTDKQTAAILE 503

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR L  LE  +I+ EL  LL +      +L+  +   + I  E+ EVK+ F       
Sbjct: 504 MRLRRLTGLEHQKIEDELKELLEKIAYFKRVLSDDQLVHDIIKEELSEVKKKFGSP---- 559

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   E   A K    + +I +E + V ++  G+++          K     +S ++ 
Sbjct: 560 -RRTLLSE---AAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNL 615

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           K+ D ++    A T   +L  ST GK Y L    L        G AI  L+ L   + I 
Sbjct: 616 KDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETIS 675

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGD 659
                  + S   L+  +  G              R G   + +   +++  V +V  G+
Sbjct: 676 AVIATKDFPSDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKDNDRLISVKRVAPGE 735

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGR 717
            V +V    K +++   ++  M R   GVR  +     I+ V+  +I +          +
Sbjct: 736 KVLMVSSAGKAIMWDEGEVRAMGRDTMGVRGMNVPP--IAKVLGMEIAQPDTDLFVITEK 793

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-----KFLS 752
            Y +           RGG G        + G     K ++
Sbjct: 794 GYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLAVMKIVA 833



 Score = 71.0 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 80/223 (35%), Gaps = 19/223 (8%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
             + +  M   E   V  ++       +     L A+  K+ D L         +++L++
Sbjct: 683 FPSDEYLMFATEHGMVKKTSMDLYDRTRRD--GLIAISLKDNDRLISVKRVAPGEKVLMV 740

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           S+ GKA     G + +       ++ + ++     ++   +      L V++ KG     
Sbjct: 741 SSAGKAIMWDEGEVRAMGRDTMGVRGM-NVPPIAKVLGMEIAQPDTDLFVITEKGYGKRT 799

Query: 627 EESEIIANTRKGKTF--LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMS 682
             +E   + R G+    + ++ ++ +  V+K+    D + ++ E    +   +  I E+ 
Sbjct: 800 PIAEYPEHHRGGQGVFTITMTEKKGLLAVMKIVAEDDEIMIMSEEGVCVRTPVSGISELG 859

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           R  +GV +    D      +             + R   +  +
Sbjct: 860 RSTQGVCVMKTADKDRVTAVAI-----------SSRGKKKKAS 891


>gi|117927217|ref|YP_871768.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B]
 gi|117647680|gb|ABK51782.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B]
          Length = 834

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/775 (31%), Positives = 392/775 (50%), Gaps = 38/775 (4%)

Query: 6   ISNSNTLVEE--NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++   TL  E   ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM +
Sbjct: 1   MTQDTTLPPEGGRIEPVDLQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYD 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      + K AR+VG+VIG  HPHGD +VYD+LVRLAQP+V R+PL+ GQGNFG+   
Sbjct: 61  GGYRPDRGYVKCARVVGDVIGSYHPHGDAAVYDTLVRLAQPWVMRHPLVDGQGNFGSPGN 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE R+T +A  +L+ + ++ VDF   Y+    EPV+ P++FPNLL NG++GI
Sbjct: 121 DPAAAMRYTECRLTPLAMEMLRDIGKETVDFVPNYDGRQMEPVILPARFPNLLVNGSAGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+   A   +++P+ + E+    LLE I GPDFPTGG ++     I
Sbjct: 181 AVGMATNIPPHNLREVAAGAQWALEHPDATREELLAALLERIKGPDFPTGG-VIVGHAGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E+YR GRG   +RA   VEE  RG   +VVT++PYQV    L  +IAEL+   RIP + 
Sbjct: 240 EEAYRTGRGSIVMRAVVEVEEDARGRQSLVVTQLPYQVNPDNLAVRIAELVSEGRIPGIA 299

Query: 300 DIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           DIRD+ S+   + ++    R   P +++ +++  + ++  F  NM  L    VP+ + LD
Sbjct: 300 DIRDDSSSRTGQRLVISLKRDAVPKVVLANLYKHTQLQDTFGANMVALVD-NVPRTLSLD 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             ++ W+AH+ +V+ RR+ + ++  +RR  IL+GL+ A   +D +IA+IR          
Sbjct: 359 AFIRHWVAHQIDVIVRRTRYDLREAERRAHILRGLVKALDQLDAVIALIRGSASADEARS 418

Query: 419 SRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
                  + E Q  AIL+++LR L  LE   I  +L    AE   ++ +L +  +Q   +
Sbjct: 419 GLMELLDVDEVQATAILDMQLRKLAALERQAIIDDLAKHEAEIADLNDILANESRQRAIV 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK- 534
           + E++E+ + +        RRT       AD     + +I +E + V I+  G+ +  K 
Sbjct: 479 SEELKEIVDKYGDE-----RRTAIV---PADGDVSIEDLIAEEDVVVTITRGGYAKRTKT 530

Query: 535 -------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRG 585
                       +     ++ D ++      T   +L  +  G+ Y L A  +       
Sbjct: 531 SLYRSQRRGGKGIQGAQLRQDDVVEHFFVTTTHHWLLFFTDKGRVYRLKAYEIPEAARSA 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ +  L+    ++ I        YD+   L++ +  G        E  +N   G   +
Sbjct: 591 RGQHVANLLAFQPDEKIAQVLALRDYDAAPYLVLATRSGLVKKTALREFDSNRTGGIIAI 650

Query: 643 KVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGIS 698
            +  ++ +     V+  D + +V    + + F  D   +  M R   GV    + D    
Sbjct: 651 NLRDDDVVIGARLVSPDDELLLVSRKAQAIRFRADDEALRPMGRATSGVIGMRFHDDDAL 710

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +     +      +  + Y +        L  RGG G +  K     G  + +
Sbjct: 711 LAMMVVRPQ-AYVFVATTKGYAKRTPIEEYPLQGRGGYGVITAKITAERGDLVGA 764



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 5/120 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           +  + +  ++   V      + V ++KG A      E     R G   +          +
Sbjct: 702 MRFHDDDALLAMMVVRPQAYVFVATTKGYAKRTPIEEYPLQGRGGYGVITAKITAERGDL 761

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
              + V   D V  +     ++   + ++   SR   GVRL    +      I      G
Sbjct: 762 VGALMVDEEDEVLAITVLGGVIRTRVSEVRPTSRATMGVRLMDLAENDALVAITRNAERG 821



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 2/131 (1%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F + D+L   +       + + +T G A   P          
Sbjct: 686 DEALRPMGRATSGVIGMRFHDDDALLAMMVVRPQAYVFVATTKGYAKRTPIEEYPLQGRG 745

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G  +          D+V A + D   ++L ++  G       SE+   +R   G   + +
Sbjct: 746 GYGVITAKITAERGDLVGALMVDEEDEVLAITVLGGVIRTRVSEVRPTSRATMGVRLMDL 805

Query: 645 SSEEKMKLVVK 655
           +  + +  + +
Sbjct: 806 AENDALVAITR 816


>gi|315636356|ref|ZP_07891605.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri
           JV22]
 gi|118574928|gb|ABL07041.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|315479335|gb|EFU70019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri
           JV22]
          Length = 860

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/764 (32%), Positives = 412/764 (53%), Gaps = 31/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +  
Sbjct: 2   ENLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA
Sbjct: 62  KSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  + E       IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  +
Sbjct: 241 RVRIRAKHHI-ETKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKDAMSEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPQILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR+     + K  + +RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETRFDLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           FS             E+  +      + +I  EP+ V I++ G+++          K   
Sbjct: 479 FSNDRKT--------EIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +        G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D +  L+  +  G       +E       G   + +   +++  
Sbjct: 591 LRPDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVT 650

Query: 653 VVK--VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEG 708
                V   ++ +     + + F +++  +  R  +GVR   +K D            E 
Sbjct: 651 AKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSED 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  + +   +        L  R G G +  K   ++G  + 
Sbjct: 711 QEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIG 754



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/491 (10%), Positives = 137/491 (27%), Gaps = 23/491 (4%)

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + A +  E        I+   + ++                 R  +LE ++       
Sbjct: 332 IILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRRTIFDLEKAKARAHILEGLKIAVDNID 391

Query: 310 RIVLFPKNRSLDPD--LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +V   ++ S D +    +E+ F LS ++++  L+M +  +  + +        +  +  
Sbjct: 392 EVVRIIRSSSNDAEAKESLETRFDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILI 451

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
                  RS  ++  I R          +     EI       D    +      +T   
Sbjct: 452 AELEAILRSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITH 511

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-----EIREV 482
              +  + +++  K +             +       +++       +        ++  
Sbjct: 512 NGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVY 571

Query: 483 KEIFSKSTDLGRRRTTFCEVSRA--DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           K         G+       +         +     ++    V  +  G I+    +    
Sbjct: 572 KIPEGSRIAKGKAVVNLINLRPDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSN 631

Query: 541 SALH-------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL- 592
              +           + +   +    T  I++ ++ G+                  ++  
Sbjct: 632 IRSNGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGI 691

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV--SSEE 648
              ++ +  +    +     ++L VS KG        E     R   G   +K+   +  
Sbjct: 692 KFKIDTDFVVDADVISSEDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGN 751

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            +  V+      + ++    K++   ++ I +  R   GV + +         I     E
Sbjct: 752 VIGEVLVDDTQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKE 811

Query: 708 GLTW-IDSAGR 717
                +D  G 
Sbjct: 812 DEEIELDENGN 822



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 3/121 (2%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               IL +S  G                G  +  +       +++   + D T  L++++
Sbjct: 709 EDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIGEVLVDDTQDLMLLT 768

Query: 619 SKGNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI 675
           S G    V+ + I        G   + V S +K+  + K    D    + EN  ++ ++ 
Sbjct: 769 SIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDENGNVIRYNE 828

Query: 676 D 676
           D
Sbjct: 829 D 829


>gi|295425410|ref|ZP_06818108.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064912|gb|EFG55822.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           amylolyticus DSM 11664]
          Length = 826

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/765 (30%), Positives = 390/765 (50%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G
Sbjct: 1   MDNDNQAQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN++E+      L+ NP+++ + L++ I GPDFPTGGII+        +Y  
Sbjct: 181 GMTTNIPPHNLKEVISGLHMLMKNPDVTTKDLMKVIPGPDFPTGGIIMGRGGIYR-AYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKTIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +     P  + L  +LK +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVD-GAPHFLTLKQMLKYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H+ +V+ RR+ F +   + R  IL+GL IA  +IDEI+ IIR+          ++SRF 
Sbjct: 359 DHQEDVVTRRTKFELAKAEARAHILEGLRIALDHIDEIVKIIRSSQSSDIAKAALISRFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  ++++E  +L  +      +L   ++    I  E+ ++
Sbjct: 419 LDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------K 534
           ++ F        RRT     +    +   + +IEK+ + + ++++G+I+ +         
Sbjct: 479 QKRFGDE-----RRTEIG--ASEVISIEDEDLIEKQNVLLTLTHKGYIKRMPITEFKTQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +  + GD  +  +++ T D +L  +  GK Y+  A  +       +   I  
Sbjct: 532 RGGKGIKGMGVQNGDFTEHLIYSSTHDMLLFFTNKGKVYSKKAYEIPEFGRTAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + I T            L  ++  G       SE       G   L +   ++
Sbjct: 592 LLQLEKGEKIQTVINIPEGADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDE 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+   +  M R   GVR  + +D     V    I  
Sbjct: 652 LSNVLTTDGKQNILIGTHLGYAVTFNEGDVRPMGRTAAGVRGINLRDNDYV-VGSEVIKP 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G        ++G    
Sbjct: 711 NDEVMVISEKGYGKRTPASEYPIKGRGGKGIKTTNVSEKNGPLAG 755



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 68/193 (35%), Gaps = 6/193 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  ++GD L   L       IL+ +  G A T   G++  
Sbjct: 624 TVKRTHVSEFSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRP 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                 A    I+L  N  +V + V     +++V+S KG       SE     R GK   
Sbjct: 684 MGRTA-AGVRGINLRDNDYVVGSEVIKPNDEVMVISEKGYGKRTPASEYPIKGRGGKGIK 742

Query: 642 -LKVSSEEK-MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              VS +   +  V  V G   + V+  +  ++ F I  +P+  R   GVRL        
Sbjct: 743 TTNVSEKNGPLAGVTVVDGSKDIMVITTDGIMIRFKISDVPQTGRNTLGVRLIKVNGDSK 802

Query: 698 SDVICFKICEGLT 710
              +     E   
Sbjct: 803 VSSLAIVPTEDDQ 815


>gi|221195090|ref|ZP_03568146.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626]
 gi|221184993|gb|EEE17384.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626]
          Length = 929

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/763 (33%), Positives = 399/763 (52%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + + +    +K   +   +   +L Y++S I  RA+PD+RDG KPVHRRI++AM+E G+ 
Sbjct: 72  DLSDIHGGTLKPTDMADEMRTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAGIT 131

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                KKSA  VGEV+GK HPHGD ++YDS+VR++Q F  R PLI G GNFG+IDGD  A
Sbjct: 132 PNKPHKKSAWAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPA 191

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T+ A  +L  ++++ VD +  Y+E  +EP V P++FPNLL NG+SGIAVGM
Sbjct: 192 AMRYTEARLTRSAMEMLADLNKNTVDMQPNYDEALTEPAVLPARFPNLLVNGSSGIAVGM 251

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ EA   +IDNP+++ E+L+E + GPDFPTGG I+   + I ++Y  GR
Sbjct: 252 ATNIPPHNLGEVTEAVCMMIDNPDVTTEELMEVLPGPDFPTGG-IIMGTQGIKDAYETGR 310

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  VE    G   +VVTEIPYQV K  L EKIA+ +  K+I  + D+RDES  
Sbjct: 311 GSITVRAKVHVESTKNGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNR 370

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++    R   P +++ +++  + +++ F +    L    VP+ + L  IL+ ++ H
Sbjct: 371 KGMRIVIDLKRGEVPQVVLNNLYKRTQLQSNFGIIDLALVD-GVPRTLSLREILRCYIDH 429

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLT 424
           + +V+ RR+ F +    +RV IL+GLL A  NIDEI+ IIR+          M  RF L 
Sbjct: 430 QIDVVRRRTEFDLDKALKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKRRMHERFDLD 489

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AIL +RLR L  L    +  E+  L  +    + LL    +    IA E+R++  
Sbjct: 490 DIQGEAILQMRLRRLTGLARQDLVDEISQLREDIAYYEDLLAHENKILAVIADELRDISN 549

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            FS      +RRT   +  +  +    + +I +E + V +++ G+++          K  
Sbjct: 550 RFSN-----KRRTQISD--QDVQNLDVEDLIAEEDMVVTVTHAGYVKRVPVEIYRSQKRG 602

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
              +  +  KE D ++    A T D +L  +  GK Y +    L   +    G AI  ++
Sbjct: 603 GKGVQGVSLKENDFVEELFVASTHDYVLFFTNFGKVYRVKVHELPVGNRTTKGNAIVNVL 662

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L+  + I        + +   L+  + +G       SE     + G   + +   +++ 
Sbjct: 663 SLSEGEKIAAVITTRDFPAENYLMFATKQGMVKKTAMSEYDRTRKDGIIAINLKQGDELV 722

Query: 652 LVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
            V +V  GD V +   + K ++F   Q   M RG  GVR    K       +      G 
Sbjct: 723 NVRRVHPGDKVILCSSDGKAILFDESQARAMGRGTSGVRGIMLKGEATMLGMEITNGNGD 782

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            ++    + Y +          KRGG G        + GK ++
Sbjct: 783 LFV-ITEKGYGKRTAVSEYPEHKRGGQGVFTITMTAKKGKLVA 824



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 71/194 (36%), Gaps = 8/194 (4%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           M   +   V  +        +     + A++ K+GD L      H  D+++L S+DGKA 
Sbjct: 686 MFATKQGMVKKTAMSEYDRTRKD--GIIAINLKQGDELVNVRRVHPGDKVILCSSDGKAI 743

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                   +    G +    I L     ++   + +    L V++ KG       SE   
Sbjct: 744 LFDESQARAMG-RGTSGVRGIMLKGEATMLGMEITNGNGDLFVITEKGYGKRTAVSEYPE 802

Query: 634 NTRKGKTFLKV---SSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           + R G+    +   + + K+     V   H + ++ E   ++      I ++ R  +GV+
Sbjct: 803 HKRGGQGVFTITMTAKKGKLVACRVVGPQHEIMIMSEEGVVIRVKAVDISKLGRSTQGVK 862

Query: 689 LQSYKDGGISDVIC 702
           + +         I 
Sbjct: 863 VMNIGADDHVSAIA 876


>gi|167957372|ref|ZP_02544446.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7c]
          Length = 832

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/767 (32%), Positives = 398/767 (51%), Gaps = 25/767 (3%)

Query: 5   NISNSNTLVEE----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           NI     L EE     ++  ++   +E+ +L Y++S I +RA+PD+RDG KPV+RRI++A
Sbjct: 8   NIVEPEILNEEPEVLGIENSTVESVMEDSFLKYSMSVIIDRALPDVRDGLKPVNRRILYA 67

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M++ G     A  KSA+IVGEV+G  HPHGD S+YD++V LAQP+  RY L+ GQGNFG+
Sbjct: 68  MNKNGWRAPHATVKSAKIVGEVMGNYHPHGDSSIYDAMVNLAQPWKMRYTLVEGQGNFGS 127

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTEARM +V   +L  +D++ VDFRD ++  + EPVV PS  PN+L NG 
Sbjct: 128 MDGDEPAASRYTEARMDKVGGELLADIDKETVDFRDNFDGTEKEPVVLPSAVPNILLNGQ 187

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +AA+A IDNPEI++++LL +I GPDFPTG  +      + 
Sbjct: 188 MGIAVGMATNIPPHNLGEVIDAAVAQIDNPEITLDELLTHIKGPDFPTGAEVYGG-APMR 246

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +RA   +EE   G + I+VTE+PY + K   ++K+ EL++AK+I  + D
Sbjct: 247 QAYETGRGSVTIRAVATIEERKNGRYSIIVTEVPYGMSKEGFVDKVRELVLAKKITHIAD 306

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            RDESA     V+    +   P  ++  ++ L+ ++T F  N+  L  G  P+VM L  I
Sbjct: 307 ARDESARGKVRVVVELKKDAYPKKILNQLYKLTGLQTSFHYNVLALVNGIQPKVMGLKEI 366

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-KPVMVS 419
           L E++ HR+ V+ RR+ F ++    R  IL+GL IA  +IDE+I  IR         ++ 
Sbjct: 367 LAEFIKHRQGVIRRRTEFELRKAKERAHILEGLKIALDHIDEVIKTIRESYDDADKRLME 426

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L+E Q  AIL ++LR L+ LE  +I+ EL  L    +K++++L S ++  N +  E+
Sbjct: 427 RFGLSEIQAAAILAMQLRRLQGLERDKIEDELKQLHELIKKLEAILASEQEILNVVKTEL 486

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK------EPITVVISNRGWIRSL 533
             +K+ +        RR+          +  +    E+          +  +     R  
Sbjct: 487 LAMKDKYGDE-----RRSKIINHELGKFSDEELIPEEESVILLTSENYIKRTLVSDYRRQ 541

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
                    +  KE D +   + A T D +L  +  G+ + L A  + +     +  A  
Sbjct: 542 NRGGKGKRGMTTKEEDVIDQVVQASTHDYLLFFTNMGRIFRLKAYEVPAASLSAKGVAAV 601

Query: 592 LLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            L+ L   + I     +    +    L + + KG        +       G   +K+   
Sbjct: 602 NLLQLQPEEKITAIIKHEKNANDKGYLFMATQKGTVKKTPVKDYANVRTNGLIAIKLDEG 661

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++++ + + +GD  V +     + + F+      M R  +GVR    +       +    
Sbjct: 662 DELRWIKRTSGDNDVIISTSAGQAIRFNEKDTRPMGRSARGVRGVRLRPNDSVVGMDIVT 721

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  T +  + + + +          KRGGVG        ++G  +S
Sbjct: 722 GDDQTLLVVSEKGFGKRTKVSNFPSHKRGGVGIKAAVVTAKTGPIIS 768



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 8/177 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+   EGD L+        + +++ ++ G+A      +          ++  
Sbjct: 647 NVRTNGLIAIKLDEGDELRWIKRTSGDNDVIISTSAGQAIRFNEKDTRPMGRSARGVRG- 705

Query: 594 IDLNHNQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEK 649
           + L  N  +V    V      LLVVS KG     + S   ++ R G   K  +  +    
Sbjct: 706 VRLRPNDSVVGMDIVTGDDQTLLVVSEKGFGKRTKVSNFPSHKRGGVGIKAAVVTAKTGP 765

Query: 650 MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +  V  +  +     +V +N + +  S+  I  + R  +GV +    DG     I  
Sbjct: 766 IISVQTIDPEVTEALLVSQNGQTIRLSLSDIKLLGRTTQGVTIMRLSDGDAVSSIGL 822


>gi|33152761|ref|NP_874114.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP]
 gi|33148985|gb|AAP96503.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP]
          Length = 900

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/824 (30%), Positives = 387/824 (46%), Gaps = 83/824 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M      F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDRNSNTFNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I+N ++SIE+L+ +I GPDFPTG  I+  R+ I ++Y  GRG  
Sbjct: 182 IPPHNLNEVLDGCLAYIENDQLSIEELMRFIPGPDFPTGA-IINGRKGIEDAYCTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE+  +    I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +   
Sbjct: 241 YVRAKATVEKTEKNREQIIVTELPYQVNKAKLIEKIAELVKDKKIDGISSIQDHSDKKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRRE
Sbjct: 301 SIVIEIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDH-GQPKVLNLKQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+GL IA  NID +I +IR     +                
Sbjct: 360 VVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRQSKTAEEARLALLDRAWSLGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V    + L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPEDLAVELGVHNGEYHLSEAQARAILELRLHRLTGLEHEKIVDEYKQ 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E  ++  +LNS ++    I  E+ +VK  F           +         A     
Sbjct: 480 LLTEIGELLHILNSAERLMQVIREELEKVKAEFGDERRTEITAASGDINLEDLIAQEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + +      SA   KE D ++  L A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLY 599

Query: 574 TLPAGNLLSGRG--HGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSKGNAF 624
            L    L        G  I  ++ L    N+ I          + +   + + ++ G   
Sbjct: 600 QLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPKGEFSTDKFIFMATASGIVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR 683
            V           G   LK+   +++  V     G  + +     +++ F+   +  M R
Sbjct: 660 KVCLDAFSHIRSSGLITLKLREGDELIGVDITDGGSEIMLFSAQGRVVRFAEKAVRSMGR 719

Query: 684 -GKGVRLQSYK-----DGGISDVICFKICEGLT--------------------------- 710
              GVR             I D    +I +  T                           
Sbjct: 720 TATGVRGIKLATSDILADDIEDTEIVEIEQEETEDNTAVNLNIDRVVSLVIPRADIATSG 779

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      Y +        +  R   G L  K   R+GK +++
Sbjct: 780 DILTVTENGYGKRTVLTEYPIKSRATKGVLSIKVNERNGKVVAA 823



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGEN 667
             +L V+  G       +E    +R  K  L +   E+   +   V+V   D + ++ + 
Sbjct: 779 GDILTVTENGYGKRTVLTEYPIKSRATKGVLSIKVNERNGKVVAAVQVDELDQIMLITDA 838

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
             L+   + ++  + R  +GVR+    +      +
Sbjct: 839 GTLVRTRVAEVSLVGRNTQGVRIIRTAEDEKVVSL 873


>gi|118574926|gb|ABL07040.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/764 (32%), Positives = 412/764 (53%), Gaps = 31/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +  
Sbjct: 2   ENLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA
Sbjct: 62  KSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  + E       IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  +
Sbjct: 241 RVRIRAKHHI-ETKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKDAMSEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPQILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR+     + K  + +RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETRFDLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           FS             E+  +      + +I  EP+ V I++ G+++          K   
Sbjct: 479 FSNDRKT--------EIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +        G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D +  L+  +  G       +E       G   + +   +++  
Sbjct: 591 LRPDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVT 650

Query: 653 VVK--VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEG 708
                V   ++ +     + + F +++  +  R  +GVR   +K D            E 
Sbjct: 651 AKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSED 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  + +   +        L  R G G +  K   ++G  + 
Sbjct: 711 QEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIG 754



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/491 (10%), Positives = 137/491 (27%), Gaps = 23/491 (4%)

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + A +  E        I+   + ++                 R  +LE ++       
Sbjct: 332 IILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRRTIFDLEKAKARAHILEGLKIAVDNID 391

Query: 310 RIVLFPKNRSLDPD--LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +V   ++ S D +    +E+ F LS ++++  L+M +  +  + +        +  +  
Sbjct: 392 EVVRIIRSSSNDAEAKESLETRFDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILI 451

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
                  RS  ++  I R          +     EI       D    +      +T   
Sbjct: 452 AELEAILRSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITH 511

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-----EIREV 482
              +  + +++  K +             +       +++       +        ++  
Sbjct: 512 NGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVY 571

Query: 483 KEIFSKSTDLGRRRTTFCEVSRA--DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           K         G+       +         +     ++    V  +  G I+    +    
Sbjct: 572 KIPEGSRIAKGKAVVNLINLRPDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSN 631

Query: 541 SALH-------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL- 592
              +           + +   +    T  I++ ++ G+                  ++  
Sbjct: 632 IRSNGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGI 691

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV--SSEE 648
              ++ +  +    +     ++L VS KG        E     R   G   +K+   +  
Sbjct: 692 KFKIDTDFVVDADVISSEDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGN 751

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            +  V+      + ++    K++   ++ I +  R   GV + +         I     E
Sbjct: 752 VIGEVLVDDTQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKE 811

Query: 708 GLTW-IDSAGR 717
                +D  G 
Sbjct: 812 DEEIELDENGN 822



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 3/121 (2%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               IL +S  G                G  +  +       +++   + D T  L++++
Sbjct: 709 EDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIGEVLVDDTQDLMLLT 768

Query: 619 SKGNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI 675
           S G    V+ + I        G   + V S +K+  + K    D    + EN  ++ ++ 
Sbjct: 769 SIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDENGNVIRYNE 828

Query: 676 D 676
           D
Sbjct: 829 D 829


>gi|58336360|ref|YP_192945.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM]
 gi|227902589|ref|ZP_04020394.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796]
 gi|58253677|gb|AAV41914.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM]
 gi|227869678|gb|EEJ77099.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796]
          Length = 824

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/763 (30%), Positives = 387/763 (50%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIRNVDLTGMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ +SEPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTESEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTGGII+        +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMRNPDATTKDLMKEIPGPDFPTGGIIMGRGGIYR-AYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V+EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKVIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +     P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVD-GAPHYLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIR+          ++SRF L 
Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYQELQAKIADYKDILAKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSH 536
            F        RRT     +    +   + +IEK+ I + +++ G+I+ +           
Sbjct: 480 RFGDE-----RRTEIG--ASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +       +   I  L+
Sbjct: 533 GKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPIVNLL 592

Query: 595 DLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + +              L  V+  G       SE       G   L +   +++ 
Sbjct: 593 QLEKGEKVQAVVNIPEGADDNYLFFVTKMGTVKRTHVSEFANIRNSGLIALTLRDGDELS 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+   G+   ++G +    + F+   +  M R   GVR  + +      V    +    
Sbjct: 653 NVLTTDGNQNILIGTHLGYAVTFNESDVRAMGRTAAGVRGINLRPEDYV-VGSGVLGAND 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +        +  RGG G        ++G    
Sbjct: 712 QVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 6/193 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  ++GD L   L       IL+ +  G A T    ++ +
Sbjct: 623 TVKRTHVSEFANIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFNESDVRA 682

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                 A    I+L     +V + V  +  ++LV+S KG       SE     R GK   
Sbjct: 683 MGRTA-AGVRGINLRPEDYVVGSGVLGANDQVLVISEKGYGKRTPASEYPVKGRGGKGIK 741

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     ++V  + + + V+  +  ++ F    + + SR   GVRL    D   
Sbjct: 742 TANITEKNGPLAGVIVLDSDEDIMVITTDGIMIRFKTADVSQTSRSTIGVRLIKVNDDSR 801

Query: 698 SDVICFKICEGLT 710
              +     E   
Sbjct: 802 VASLTIVPTEAEQ 814


>gi|299143457|ref|ZP_07036537.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517942|gb|EFI41681.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 806

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/754 (32%), Positives = 389/754 (51%), Gaps = 14/754 (1%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             + ++ V  V L   + + YL Y++S I  RA+PD++DG KPVHRRII+ M  +GL   
Sbjct: 2   TEIYDKGVIDVGLEEKMRKSYLDYSMSVIVSRALPDVKDGLKPVHRRIIYGMQVLGLQPN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++KSAR+VG+V+GK HPHGD S+YD+ VRLAQ F  RYPL+ GQGNFGNIDGDSAAA 
Sbjct: 62  GPYRKSARLVGDVMGKFHPHGDSSIYDAAVRLAQEFNTRYPLVDGQGNFGNIDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RMT++ + +L+ +++D VDF+  ++EE+ EPVV PS+FPNLL NG++GIAVGMAT
Sbjct: 122 RYTELRMTKLTQEMLRDINKDTVDFKPNFDEEEIEPVVLPSRFPNLLVNGSAGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           ++P HN+ E+    ++ IDN EI+I++L+  I GPDFPTG  I   RE I E+Y+ GRG 
Sbjct: 182 NMPPHNLTEVINGTISFIDNEEITIDELMNTIKGPDFPTGAYI-MGREGIKEAYKTGRGK 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA   +EE       IVV EIPYQV KS LI KIAEL+  K I  +  IRDES    
Sbjct: 241 IQVRAVAEIEEEK-NKRRIVVREIPYQVNKSNLIMKIAELVKNKVIDGISAIRDESTRKG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R  +P++++  ++  + M+T F +    L    VP+++ L  ++  ++ H+ 
Sbjct: 300 IRIAIDLKRDANPNVVLNKLYKNTQMQTTFGIINLALV-NGVPKILNLKELISYYVDHQI 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTEN 426
            V+ RR+ F ++    R  I++GL IA  NID II I+R+              F LTE 
Sbjct: 359 NVVTRRTKFDLEKAKARAHIVEGLKIALDNIDRIIEIVRSSRNDDEAKIKFTEEFGLTEI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++R+R L  LE  ++  E   L+    +   +L + ++  + I  E+ E+++ F
Sbjct: 419 QGQAILDMRIRRLTGLEREKLDEEYKELIRLIAEFTEILENHEKLMSIIKDELIEIRDKF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   +                  +   +   +     G  +  K     +SAL  +
Sbjct: 479 GDLRRTVIKSAAGEIDLEDIIKEEDVVITLTQFGYIKRMPEGTYKPQKRGGRGISALTTR 538

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D +       T D IL  +  G+AY L A  +       +  AI  +++L+ N+ + +
Sbjct: 539 EEDFVNDLFITSTHDLILFFTNLGRAYVLKAYEIPESSRQSKGTAIINILNLSANEKVQS 598

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                 YD    +++ +  G    +   EI    + G   + +   + +      TG D 
Sbjct: 599 IIPVREYDPNLNIVMATKDGIIKRISFEEIKNIRKSGINAMTLRDGDSIIGTRLTTGEDE 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +    + F  D++    R   GV+                  +    +  +   +
Sbjct: 659 LILVTKKGMSIRFKEDEVRLTGRTSMGVKAIELNKDDEVVGFDVVSADK-YLLVISQNGF 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +        +  R G G +  K   ++G  +S+
Sbjct: 718 GKLTPIDEYRIQSRAGKGIITYKVKDKTGDLVSA 751



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 70/184 (38%), Gaps = 6/184 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +I    +          ++A+  ++GDS+         D ++L++  G +       +  
Sbjct: 619 IIKRISFEEIKNIRKSGINAMTLRDGDSIIGTRLTTGEDELILVTKKGMSIRFKEDEVRL 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   I+LN + ++V   V  +   LLV+S  G   +    E    +R GK  +
Sbjct: 679 TGRTSMGV-KAIELNKDDEVVGFDVVSADKYLLVISQNGFGKLTPIDEYRIQSRAGKGII 737

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
               ++K   +     +   D + ++     ++    + I  M R   GV+L + KD  +
Sbjct: 738 TYKVKDKTGDLVSAKIIDKNDEIMMITSEGIIIRIETEGISVMGRSTSGVKLMNIKDSEV 797

Query: 698 SDVI 701
             V 
Sbjct: 798 VAVA 801


>gi|325832324|ref|ZP_08165323.1| DNA gyrase, A subunit [Eggerthella sp. HGA1]
 gi|325486160|gb|EGC88614.1| DNA gyrase, A subunit [Eggerthella sp. HGA1]
          Length = 932

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/760 (34%), Positives = 401/760 (52%), Gaps = 36/760 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V++  L   ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM+E G        KSA
Sbjct: 86  VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGD +VYD++VRLAQPF  R PL+ G GNFG+IDGD AAA RYTE+R+
Sbjct: 146 RTVGDVIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VA  +L+ +D++ VDF+  Y+E   EP V P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A   ++DNP+++ E+L++ + GPDFPTGG I+  ++ I ++Y  GRG   VRA+ 
Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGG-IIMGKKGIRDAYETGRGSLTVRAKC 324

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VEE   G   IVVTEIPYQV + RL+EK+ EL+  K++P + +I D +      ++   
Sbjct: 325 KVEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDL 384

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +   P +++  ++  + ++  F + M  L     P+V+ L  +L  ++AH+ EV+ RR+
Sbjct: 385 KKDAIPQVVLNKLYKHTQLQVGFGVIMLSLVD-GAPRVLSLKEMLHYYIAHQEEVIVRRT 443

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILN 433
            + +   + R  IL+GL+IA  NIDEII IIR+    K     M  RF+LT+ Q  AIL 
Sbjct: 444 RYELAKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTERFALTDKQTAAILE 503

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR L  LE  +I+ EL  LL        +L+  +     I  E+ EVK+ F       
Sbjct: 504 MRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQLVHEIIKEELLEVKKKFGSP---- 559

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   E   A K    + +I +E + V ++  G+++          K     +S ++ 
Sbjct: 560 -RRTLLSE---AAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNL 615

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           K+ D ++    A T   +L  ST GK Y L    L        G AI  L+ L   + I 
Sbjct: 616 KDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETIS 675

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGD 659
                  + S   L+  +  G              R G   + +   +++  V +V  G+
Sbjct: 676 AVIATKDFPSDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKDNDRLISVKRVAPGE 735

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGR 717
            V +V    K +++   ++  M R   GVR  +     I+ V+  +I +          +
Sbjct: 736 KVLMVSSAGKAIMWDEGEVRAMGRDTMGVRGMNVPP--IAKVLGMEIAQPDTDLFVITEK 793

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-----KFLS 752
            Y +           RGG G        + G     K ++
Sbjct: 794 GYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLAVMKIVA 833



 Score = 71.0 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 80/223 (35%), Gaps = 19/223 (8%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
             + +  M   E   V  ++       +     L A+  K+ D L         +++L++
Sbjct: 683 FPSDEYLMFATEHGMVKKTSMDLYDRTRRD--GLIAISLKDNDRLISVKRVAPGEKVLMV 740

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           S+ GKA     G + +       ++ + ++     ++   +      L V++ KG     
Sbjct: 741 SSAGKAIMWDEGEVRAMGRDTMGVRGM-NVPPIAKVLGMEIAQPDTDLFVITEKGYGKRT 799

Query: 627 EESEIIANTRKGKTF--LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMS 682
             +E   + R G+    + ++ ++ +  V+K+    D + ++ E    +   +  I E+ 
Sbjct: 800 PIAEYPEHHRGGQGVFTITMTEKKGLLAVMKIVAEDDEIMIMSEEGVCVRTPVSGISELG 859

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           R  +GV +    D      +             + R   +  +
Sbjct: 860 RSTQGVCVMKTADKDRVTAVAI-----------SSRGKKKKAS 891


>gi|111020669|ref|YP_703641.1| DNA gyrase subunit A [Rhodococcus jostii RHA1]
 gi|110820199|gb|ABG95483.1| DNA topoisomerase subunit A [Rhodococcus jostii RHA1]
          Length = 840

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/777 (29%), Positives = 392/777 (50%), Gaps = 40/777 (5%)

Query: 6   ISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    E    + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDTTLPPEGPGHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G      + KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+ 
Sbjct: 61  YDNGYRPDRGYVKSARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D AAA RYTE R+T +A  +L+ +D + VDF   Y+    EP V PS+ PNLL NG+ 
Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN++E+ EA          + E ++  ++E + GPDFPT G+IV   +
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGG-Q 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y  GRG  R+R    +EE  +G   IV+TE+PYQV    LI  IAE +   +I  
Sbjct: 240 GIHDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAG 299

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + DI DE S      ++    R     +++ +++  + ++T F  NM  +    VP+ + 
Sbjct: 300 ISDIHDESSDRAGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVD-GVPRTLR 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--- 413
           LD +++ ++AH+ EV+ RR+ + ++  + R  IL+GL+ A   +DE+IA+IR        
Sbjct: 359 LDQMIRLYVAHQVEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIA 418

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++   ++ E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q  
Sbjct: 419 RAGLIELLTVDEIQADAILAMQLRRLAALERQKIIDELAEIEREIADLKDILEKPERQRR 478

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
            +  E++E+ +          RRT       AD     + +I +E + V I+  G+ +  
Sbjct: 479 IVRDELKEIVDKHGD-----DRRTRII---AADGDVADEDLIAREDVVVTITETGYAKRT 530

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--G 583
                   K     +     K+ D +     + T D +L  +T G+ Y   A  L     
Sbjct: 531 KTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTKGRVYRAKAYELPEASR 590

Query: 584 RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+    ++ I +      Y+    L++ +  G     + ++  +N   G  
Sbjct: 591 TARGQHVANLLAFQPDERIQSVIQIKTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIV 650

Query: 641 FLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGG 696
            + +  E+++   V   + D + +V    + + FS     +  M R   GV+   + +G 
Sbjct: 651 AINLRGEDELVGAVLCSSDDDLLLVSAQGQSIRFSATDEALRPMGRATSGVQGMRF-NGD 709

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +    + EG   + +    Y++        +  RGG G L  +   + G  + +
Sbjct: 710 DELLSLNVVREGTYLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGA 766



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 74/205 (36%), Gaps = 12/205 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ +  G ++  K    D +        + +  D L  A+   + D +LL+S 
Sbjct: 618 YEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSDDDLLLVSA 677

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            G++    A +      G   +    +  N + ++++  V      LLV +S G +    
Sbjct: 678 QGQSIRFSATDEALRPMGRATSGVQGMRFNGDDELLSLNVVREGTYLLVATSGGYSKRTG 737

Query: 628 ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMSR 683
             +     R GK  L +        +   + V  D     +     ++  +  Q+ +  R
Sbjct: 738 MEDYPVQGRGGKGVLTIQYDKKRGTLVGALIVNDDDELYAITSGGGVIRTAAKQVRKAGR 797

Query: 684 -GKGVRLQSYKDGGISDVICFKICE 707
             KGVRL +  +G     I     E
Sbjct: 798 QTKGVRLMNLGEGDTLLAIARNADE 822


>gi|227877546|ref|ZP_03995606.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256843826|ref|ZP_05549313.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256849619|ref|ZP_05555051.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US]
 gi|262046287|ref|ZP_06019250.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|293380896|ref|ZP_06626932.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1]
 gi|227862845|gb|EEJ70304.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256613731|gb|EEU18933.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256713735|gb|EEU28724.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US]
 gi|260573617|gb|EEX30174.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|290922569|gb|EFD99535.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1]
          Length = 826

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/763 (30%), Positives = 389/763 (50%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  +K V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTGGII+        +Y  G+
Sbjct: 182 TTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYR-AYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V+EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +     P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVD-GAPHFLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIRN          ++SRF L 
Sbjct: 360 QEDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E   L A+      +L+  ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILSKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSH 536
            F       +RRT     +    +   + +IEK+ I + +++ G+I+ +           
Sbjct: 480 RFGD-----KRRTEIG--ASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +       +   +  L+
Sbjct: 533 GKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRAAKGLPVVNLL 592

Query: 595 DLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T            L  V+  G       SE       G   L +   +++ 
Sbjct: 593 QLEKGEKVQTVINIPEGADDNYLFFVTKMGTVKRTHVSEFSNIRNSGLIALTLKDGDELS 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+   G    ++G +    + F+   +  M R   GVR  + ++            +  
Sbjct: 653 NVLTTDGKQNILIGTHLGYAVTFNEGDVRAMGRTAAGVRGINLREHDYVVGSGILGADD- 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +        +  RGG G        ++G    
Sbjct: 712 QVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 6/193 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  K+GD L   L       IL+ +  G A T   G++ +
Sbjct: 623 TVKRTHVSEFSNIRNSGLIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRA 682

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                 A    I+L  +  +V + +  +  ++LV+S KG       SE     R GK   
Sbjct: 683 MGRTA-AGVRGINLREHDYVVGSGILGADDQVLVISEKGYGKRTPASEYPVKGRGGKGIK 741

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     + +  + + V V+  +  ++ F ID + +  R   GVRL    D   
Sbjct: 742 TANITEKNGPLAGVTIINSNNDVMVITTDGIMIRFRIDDVSQTGRSTMGVRLIKVSDDSQ 801

Query: 698 SDVICFKICEGLT 710
              +     E   
Sbjct: 802 VASLTVVPTEEEQ 814


>gi|256826466|ref|YP_003150425.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641]
 gi|256582609|gb|ACU93743.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641]
          Length = 870

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/769 (32%), Positives = 395/769 (51%), Gaps = 28/769 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            +    S       V    L   + + ++ Y++S I  RA+PD+RDG KPVHRRI++AM+
Sbjct: 30  EETTGESTYESASQVLPADLGQQMRQSFIEYSMSVIVARALPDVRDGLKPVHRRILYAMN 89

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G+       KSAR VG+VIGK HPHGD +VYD++VR+AQPF    PL+ G GNFG+ID
Sbjct: 90  ESGILPNRPHAKSARTVGDVIGKYHPHGDTAVYDTMVRMAQPFSMSVPLVDGHGNFGSID 149

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDSAAA RYTEAR+ + A  +L+ +D++ VD++  Y+E   EP V P++FPNLL NG+ G
Sbjct: 150 GDSAAAMRYTEARLARPAMELLRDLDKETVDWQPNYDESLKEPNVLPARFPNLLVNGSQG 209

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A   +IDNP++S+++LL+ + GPDFPTG   +  RE I E+
Sbjct: 210 IAVGMATNIPPHNLAEVIDATCLVIDNPDVSLDELLKVMPGPDFPTGA-TIMGREGIREA 268

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +RA+  + +  RG   I V EIPY V +++L+EKI ELI  K++P + ++ 
Sbjct: 269 YETGRGSMTLRAKCEISQTKRGRSIITVKEIPYMVNRTKLLEKIGELIRDKKLPEISNVH 328

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D +      ++    ++  P +++  ++  + M+T F  NM  L    VP  + L  IL 
Sbjct: 329 DGADRHGIDIIIELKQNAIPQVVLNKLYKHTQMQTTFGANMLALVDD-VPHTLSLKQILS 387

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--- 419
            ++AH+ +V+ RR+ + +Q  + R  I++GLLIA  NIDE+I IIR+    K        
Sbjct: 388 YYIAHQIDVITRRTRYDLQKAEERAHIVRGLLIALDNIDEVIHIIRSSKTDKEARDRLIE 447

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F+L E Q +AIL +RLR L  LE  ++  EL +L         +L         I  E+
Sbjct: 448 NFNLDEIQANAILEMRLRRLTGLEYDKLVEELRDLEERIAYYKRVLEDENLVKQIIKEEM 507

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
            E+K+ FS      +RRT       + K    + +I  E + V ++  G+++        
Sbjct: 508 GEIKKKFS-----SKRRTQI--QRASAKDIDVEDLIADEDMVVTVTKTGYVKRLPLTTYR 560

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEA 589
             K     +  ++ KE D ++    A T   +L  S+ GK Y L    L        G A
Sbjct: 561 QQKRGGKGMQGVNLKEDDFVEHLFVASTHAYMLFFSSKGKVYRLKVYELPEAGRHARGTA 620

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  L+ L   + I        +     L+  +S G       S      R G   + ++ 
Sbjct: 621 IVNLLSLEKGESIAAVIATKDFPKEEYLMFATSAGMVKKTSMSLYDRTRRDGLIAINLND 680

Query: 647 EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++  V +V  G+ V +V    K +++   +   M R  KGVR            +   
Sbjct: 681 GDELISVKRVSDGEKVFMVSSAGKAIVWDESEARAMGRDTKGVRGMKVPADEHVLEMSIA 740

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   ++    + Y +  +     L  RGG G        + G+  ++
Sbjct: 741 KPQADLFV-ITEKGYGKRTSVYEYPLHHRGGQGVYTITMTRKKGELAAA 788



 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 67/201 (33%), Gaps = 8/201 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +  M       V  ++       +     L A++  +GD L         +++ ++S+ G
Sbjct: 646 EYLMFATSAGMVKKTSMSLYDRTRRD--GLIAINLNDGDELISVKRVSDGEKVFMVSSAG 703

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           KA         +     + ++ +  +  ++ ++   +      L V++ KG        E
Sbjct: 704 KAIVWDESEARAMGRDTKGVRGM-KVPADEHVLEMSIAKPQADLFVITEKGYGKRTSVYE 762

Query: 631 IIANTRKG----KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
              + R G       +     E     +    + + ++     ++   +  + ++ R  +
Sbjct: 763 YPLHHRGGQGVYTITMTRKKGELAAAKIVTDDEELIIITNEGVVVRTPVKGVSKLGRSTQ 822

Query: 686 GVRLQSYKDGGISDVICFKIC 706
           GVR+ +  D      +     
Sbjct: 823 GVRIMNVVDKDKVRAVGIADD 843


>gi|86606084|ref|YP_474847.1| DNA gyrase subunit A [Synechococcus sp. JA-3-3Ab]
 gi|86554626|gb|ABC99584.1| DNA gyrase, A subunit [Synechococcus sp. JA-3-3Ab]
          Length = 846

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/767 (29%), Positives = 376/767 (49%), Gaps = 32/767 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            + +  L+  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K 
Sbjct: 4   RIISTDLQREMAQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKC 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGDQ+VY++LVR+AQ F  R  L+ G GNFG+ID D  AA RYTE R
Sbjct: 64  ARVVGDVIGKYHPHGDQAVYEALVRMAQDFSMRERLVDGHGNFGSIDNDPPAAMRYTECR 123

Query: 136 MTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +T  A+  +LQ +D + VDF D Y+    EP+V P++ P LL NG+SGIAVGMAT+IP H
Sbjct: 124 LTAFAQEALLQDIDANTVDFIDNYDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +ALI NP ++  +L+++I  PDFPTGG ++  +E I E+Y  GRG   +R 
Sbjct: 184 NLGELVDGLIALIHNPNLTSLELMQWIPAPDFPTGG-LIMGQEGIREAYTTGRGSITLRG 242

Query: 255 RWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
              VE +          I++TE+PYQ  K+ +IEKIAEL+  K++  + DIRDES  +  
Sbjct: 243 VATVETIEQRGRPTREAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDESDREGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P +++ +++  + +++ F +   +  +   P+ + L   L+ +L  R E
Sbjct: 303 RVVIELKRDAQPQVVLNNLYKQTPLQSNFGV-NMLAILNGEPRTLTLRDALQAFLDFRAE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+ + +Q  + R  +L+G L+A   +D +IA+IR             +   L+E Q
Sbjct: 362 VIERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADATTARAELQATLGLSEAQ 421

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            D IL ++LR L  LE  +I++E ++L+ +   +  +L   ++    I+ E++++K  F+
Sbjct: 422 ADGILQMQLRRLTALEAEKIQAEHEDLVRQIADLRDILARRERVMQIISEELQQLKSRFA 481

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                                  +  +   E   +   +    +     +   +    K+
Sbjct: 482 SPRRSRLCLEDCELKVADLIENRETVIFLTEQGYIKRMDLEEFQVQGRATRGKAGARIKD 541

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D+++      + D IL  +  G  YTLPA  +  G       AI  L+ +   + + + 
Sbjct: 542 DDAIEQFFACRSHDTILFFTDRGMVYTLPAYEIPQGSRTARGSAIVQLLPITREERVTSM 601

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHV 661
                +     L++++  G       S        G   + +   ++++ V +  + D V
Sbjct: 602 VPVSEFSDDEYLVMLTRAGYIKKTALSAFANVRSNGLIAISLEENDELRWVRRARSSDDV 661

Query: 662 AVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT-------- 710
            +       + F  D   +  + R  +GVR  +   G     +     E +         
Sbjct: 662 VMATRQGMCIRFRADDEQLRPLGRATRGVRAITLNPGDDIVSMDIIFAESVMAAEREGER 721

Query: 711 -----WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 +        +           RGG G +  K    S +  +
Sbjct: 722 LANPWVLVITKEGRGKRSAIDHFRRQNRGGKGVIATKFRQESDELAA 768


>gi|269791887|ref|YP_003316791.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099522|gb|ACZ18509.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 816

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/754 (31%), Positives = 391/754 (51%), Gaps = 11/754 (1%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N ++ + + V  + L   ++  Y+ YA+S I  RA+PD RDG KPV RRI++AM E+GL 
Sbjct: 5   NGSSDLFQKVIPLPLEEEIKHSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMRELGLR 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               FKKSAR+VGE +GK HPHGD ++Y+++VR++Q F  RYPL+ GQGNFG+IDGD  A
Sbjct: 65  HSQPFKKSARVVGETMGKYHPHGDAAIYETMVRMSQDFSMRYPLVDGQGNFGSIDGDPPA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+  + E +L  +DED VD+   ++E   EP V PS+ PNLL NG++GIAVGM
Sbjct: 125 AMRYTEARLHSLGEEMLADIDEDTVDWLPNFDESLEEPAVLPSRIPNLLVNGSTGIAVGM 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN++E+ +A   L+DNP++ + +L+ ++ GPDFPTGG ++  R+ I+++Y  GR
Sbjct: 185 ATNMPPHNLREVVDACCTLLDNPDVEVGELMTHVPGPDFPTGG-VIMGRDGIIDAYTTGR 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VR    +E+  RG   IV+T+IPY V KS LIE I + + A ++  + D+RDES  
Sbjct: 244 GKIVVRGCAEIEDAKRGKKAIVITQIPYMVNKSNLIETIVKGVQAGQLDGITDVRDESNR 303

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++   +R  DP L++  ++  + ++T F +    L     P  + L G+L+ ++ H
Sbjct: 304 EGIRLVLELHRDSDPHLVLRQLYSRTQLQTTFGVINLALVD-GRPVELNLKGLLQIFIDH 362

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLT 424
           RR V+ RR+ +R++  + R  IL+GL+ A   ID +IA+IR+ + P   K  +V     T
Sbjct: 363 RRMVVRRRTQYRLRKAEERAHILEGLVKALDMIDMVIALIRSSEDPLVAKGRLVEELGFT 422

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AIL++RL+ L  LE+++++ EL  L+A+  +   +L    +  + +  E+ EVK 
Sbjct: 423 EAQAQAILDMRLQRLTSLEKHKLQEELAELMAQIARYRLILGDPAELDSVVREELLEVKR 482

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +          +             +  +       +        R        +    
Sbjct: 483 AYGDERRTVIEDSVDDVSYEDLIPETEVVVAMTRDGFIRRMPLQDYRCQARGGKGVKGAA 542

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA-GNLLSGRGHGEAIQLLIDLNHNQDIV 603
            K  D + +     T   + L +  G+ ++L          G G+ +   I L+  + +V
Sbjct: 543 VKGEDEVSLVAVTTTHRSLYLFTDRGRVFSLKCLAIPEPKSGRGKHVSTFISLDEGESVV 602

Query: 604 TAF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
           T      +    + +V+  G A  +   E+   TR G+  L +  ++ +  V    G D 
Sbjct: 603 TFRDSALEGARFVFLVTKMGLAKRLPVGELEGITRAGRRILGLEEDDTIARVRFTGGEDQ 662

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +     + L  S  +     R  KGVR        +  V C  I  G   +  +    
Sbjct: 663 LLLTTAKGQTLRVSETEFRPQGRAAKGVRGIKLDPDDLV-VGCDVIMPGRQVLFISQLGM 721

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +        +  RGG+G    +   R+G  + +
Sbjct: 722 GKRTRYEEFTVHHRGGMGVRAMRLGERTGHLVGA 755



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 7/149 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D++LL +  G+   +            + ++  I L+ +  +V   V     ++L +S  
Sbjct: 661 DQLLLTTAKGQTLRVSETEFRPQGRAAKGVRG-IKLDPDDLVVGCDVIMPGRQVLFISQL 719

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLV-VKVTGDHVAVVGENRKLLIFSID 676
           G        E   + R G     +   E+   +         D + V+    +++ FS  
Sbjct: 720 GMGKRTRYEEFTVHHRGGMGVRAMRLGERTGHLVGAWGVADDDEIMVITSRGRVVRFSAR 779

Query: 677 QIPEMSR-GKGVRLQSYKDGG-ISDVICF 703
            +  +SR   G+ L    +G  ++DV   
Sbjct: 780 DVSSLSRSAMGLTLVRLDEGDQVADVTVI 808



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             +  +     D +          ++L +S  G                G  ++ +    
Sbjct: 688 KGVRGIKLDPDDLVVGCDVIMPGRQVLFISQLGMGKRTRYEEFTVHHRGGMGVRAMRLGE 747

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVK 655
               +V A+      +++V++S+G        ++ + +R   G T +++   +++  V  
Sbjct: 748 RTGHLVGAWGVADDDEIMVITSRGRVVRFSARDVSSLSRSAMGLTLVRLDEGDQVADVTV 807

Query: 656 V 656
           +
Sbjct: 808 I 808


>gi|226362909|ref|YP_002780689.1| DNA gyrase subunit A [Rhodococcus opacus B4]
 gi|226241396|dbj|BAH51744.1| DNA gyrase subunit A [Rhodococcus opacus B4]
          Length = 840

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/777 (29%), Positives = 392/777 (50%), Gaps = 40/777 (5%)

Query: 6   ISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    E    + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDTTLPPEGPGHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G      + KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+ 
Sbjct: 61  YDNGYRPDRGYVKSARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D AAA RYTE R+T +A  +L+ +D + VDF   Y+    EP V PS+ PNLL NG+ 
Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN++E+ EA          + E ++  ++E + GPDFPT G+IV   +
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGG-Q 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y  GRG  R+R    +EE  +G   IV+TE+PYQV    LI  IAE +   +I  
Sbjct: 240 GIHDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAG 299

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + DI DE S      ++    R     +++ +++  + ++T F  NM  +    VP+ + 
Sbjct: 300 ISDIHDESSDRAGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVD-GVPRTLR 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--- 413
           LD +++ ++AH+ EV+ RR+ + ++  + R  IL+GL+ A   +DE+IA+IR        
Sbjct: 359 LDQMIRLYVAHQVEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIA 418

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++   ++ E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q  
Sbjct: 419 RAGLIELLTVDEIQADAILAMQLRRLAALERQKIIDELAEIEREIADLKDILEKPERQRR 478

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
            +  E++E+ +          RRT       AD     + +I +E + V I+  G+ +  
Sbjct: 479 IVRDELKEIVDKHGD-----DRRTRII---AADGDVADEDLIAREDVVVTITETGYAKRT 530

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--G 583
                   K     +     K+ D +     + T D +L  +T G+ Y   A  L     
Sbjct: 531 KTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTKGRVYRAKAYELPEASR 590

Query: 584 RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+    ++ I +      Y+    L++ +  G     + ++  +N   G  
Sbjct: 591 TARGQHVANLLAFQPDERIQSVIQIKTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIV 650

Query: 641 FLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGG 696
            + +  E+++   V   + D + +V    + + FS     +  M R   GV+   + +G 
Sbjct: 651 AINLRGEDELVGAVLCSSDDDLLLVSAQGQSIRFSATDEALRPMGRATSGVQGMRF-NGD 709

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +    + EG   + +    Y++        +  RGG G L  +   + G  + +
Sbjct: 710 DELLSLNVVREGTYLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGA 766



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 79/223 (35%), Gaps = 13/223 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ +  G ++  K    D +        + +  D L  A+   + D +LL+S 
Sbjct: 618 YEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSDDDLLLVSA 677

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            G++    A +      G   +    +  N + ++++  V      LLV +S G +    
Sbjct: 678 QGQSIRFSATDEALRPMGRATSGVQGMRFNGDDELLSLNVVREGTYLLVATSGGYSKRTG 737

Query: 628 ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMSR 683
             +     R GK  L +        +   + V  D     +     ++  +  Q+ +  R
Sbjct: 738 MEDYPVQGRGGKGVLTIQYDKKRGTLVGALIVNDDDELYAITSGGGVIRTAAKQVRKAGR 797

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG-RSYNRSEN 724
             KGVRL +  +G     I     E     D+A        E+
Sbjct: 798 QTKGVRLMNLGEGDNLLAIARNADEPDETDDNAESSGKGAKES 840


>gi|315452542|ref|YP_004072812.1| DNA gyrase, subunit A [Helicobacter felis ATCC 49179]
 gi|315131594|emb|CBY82222.1| DNA gyrase, A subunit [Helicobacter felis ATCC 49179]
          Length = 806

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/759 (32%), Positives = 403/759 (53%), Gaps = 31/759 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++  ++ + +  +L+E YL Y++S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 1   MQPKIEDIRIEESLKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGSKVPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VY++LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYT
Sbjct: 61  KKSARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   +E +L+ +D+D +DF   Y+    EP + PS+ PNLL NG+SGIAVGMATSIP
Sbjct: 121 EARMAAPSEELLRDLDKDTIDFVSNYDSTLKEPDILPSRLPNLLINGSSGIAVGMATSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H   EI +A + +++NP+  +  L+E + GPDFPTGG +V  +  I+E+Y  GRG  +V
Sbjct: 181 PHRPDEIIDALIYVLENPQAELIDLVEIVQGPDFPTGG-VVYGKAGILEAYTTGRGRIKV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  V E       I++ EIPYQV K++L+E+I+ L   K +  + ++RDES  +   V
Sbjct: 240 RAKSRV-EKHNNRETIIIEEIPYQVNKAKLVEQISTLAKDKIVEGIAEVRDESDREGVRV 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  S+ME  F + + +    + P+V  L  +LK +L HR+ V+
Sbjct: 299 VIELKKDAYSEIVLNHLYKSSNMEITFSI-ILLAIYNKEPRVFNLLELLKLFLVHRKSVV 357

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
            RR+   ++    R  IL+GL +A  + + +IA+I+     +    +++    L+E Q  
Sbjct: 358 IRRTIHELEKAKARAHILEGLKVAMQHSEAVIALIKGSADAQGAKDLLMQTHHLSEEQSK 417

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE+ +I+ E   L  +   ++ +L +  +    I  E+ EVKE FS  
Sbjct: 418 AILDMRLQRLTGLEQEKIQQEHTQLQEKIALLEEILQNADKLNALIKEELLEVKEKFSTP 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                R+T   E          + +I  E + V IS++G+++          +      +
Sbjct: 478 -----RKTQIEEDYEG---IGIEDLIAHEDMVVTISHKGYVKRVPLKVYEQQRRGGKGKN 529

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHN 599
           + +  E D ++    A+T D IL ++  G+ + L    +     +  G A+  LIDL   
Sbjct: 530 SGNTHEDDFIESFFIANTHDTILFITNTGQLHWLKVYKIPEMGRNAIGRALVNLIDLQPG 589

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I        +D+   L+  +  G     E S      R G   + +  ++ +     +
Sbjct: 590 ESIKATIPTKDFDADKSLVFFTKNGIVKRTELSAF-GRIRGGVRAIVLEEDDALVTAKII 648

Query: 657 TG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + FS++ + EM R  +GVR    ++G           +    + 
Sbjct: 649 DSSVQELFMASSKGMCIRFSVESVREMGRVARGVRGMRLREGDFVIGAGGVSSDEQKLLS 708

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +   +           RGG+G +  K  P++G  + 
Sbjct: 709 VSSKGIGKQTLAGAYRAQGRGGLGVIGVKITPKTGHLVG 747



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 5/152 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             + + S+ G        ++         ++ +     +  I    V     KLL VSSK
Sbjct: 653 QELFMASSKGMCIRFSVESVREMGRVARGVRGMRLREGDFVIGAGGVSSDEQKLLSVSSK 712

Query: 621 GNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENRKLLIFSID 676
           G           A  R G   + V        +  +V V  G  + ++ ++ K++   ++
Sbjct: 713 GIGKQTLAGAYRAQGRGGLGVIGVKITPKTGHLVGIVSVDEGQDLMLLTKSGKMIRMPME 772

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            I E  R   GV+L   +   +         E
Sbjct: 773 TIRETGRNASGVKLVQMESDEVVYASTCPKEE 804


>gi|32267132|ref|NP_861164.1| DNA gyrase subunit A [Helicobacter hepaticus ATCC 51449]
 gi|32263185|gb|AAP78230.1| DNA gyrase [Helicobacter hepaticus ATCC 51449]
          Length = 824

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/763 (33%), Positives = 410/763 (53%), Gaps = 31/763 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           ++L+E+N   V +  +++E YL Y++S I  RA+PD +DG KPVHRRI++AM+E+ L   
Sbjct: 2   DSLIEDNNIDVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELNLSPR 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD AAA 
Sbjct: 62  RPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT  +E +L+ +D+D V+F   Y+    EP V P++FPNLL NG+SGIAVGMAT
Sbjct: 122 RYTEARMTSASEEMLRDIDKDTVEFVPNYDNTLYEPDVLPTRFPNLLVNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIP H + EI +A + +ID     +E LL+ + GPDFPTGG I+  +  I+E+YR GRG 
Sbjct: 182 SIPPHRIDEIIDALIMVIDKNTQDVEDLLDIVQGPDFPTGG-IIYGKAGILEAYRTGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA+  +E+       IV+ E+PYQV K++L+E+I+EL   K I  + ++RDES  + 
Sbjct: 241 IRVRAKVHIEKTKTK-DVIVIDEVPYQVNKAKLVEQISELAKEKVIDGISEVRDESDREG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    ++++  +F  + ME+ F + +  ++  + P++  L  +L+ ++AHR+
Sbjct: 300 IRVVIELKRDAMSEIVLNHLFKSTTMESTFGIILLAIN-NKEPKIFNLLELLQIFIAHRK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTEN 426
            ++ RRS F ++    R  IL+GL+IA  NIDE+I  IR             S+F L+E 
Sbjct: 359 TIIIRRSIFELEKAKARAHILEGLIIALDNIDEVIKTIRASKDTDEAKNALVSKFKLSEL 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RL+ L  LE  +I  E   L A+   ++S+L S  +  + +  E+ E+KE F
Sbjct: 419 QAKAILEMRLQRLTGLERDKINEEYAQLQAQIAYLESILKSEDKLKSIVKEELLEIKEKF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           S      +RRT   E   A      + +I  E + V +S+RG+++               
Sbjct: 479 ST-----KRRTQIEEDYDA---IDVEDLIPNEKVVVTMSHRGYVKRVLLKTYEKQNRGGK 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
              + +  + D ++    A+T D I+ ++  G+ Y L    +        G+A+  LI+L
Sbjct: 531 GKISGNTHDDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAVVNLINL 590

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I+       ++    L+  +  G        E       G   + +   +++   
Sbjct: 591 QADEKIMATITTTDFNEDKSLVFFTKNGVVKRTNLKEYGNIRSIGVRAINLDENDELVTA 650

Query: 654 VKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGL 709
             V      + +       + F ++++ E+ R  +GV    +K              +  
Sbjct: 651 HIVDSHIKELFIATYQGMCIRFGVEELREIGRVSRGVTGIKFKASEDCVIAATTIANDTD 710

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + R   +        L  R G G +V K  PR+GK +S
Sbjct: 711 KLLTVSERGIGKQTLAGEYRLQSRAGKGVIVMKLTPRTGKLVS 753



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 75/203 (36%), Gaps = 9/203 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+            S+ + A++  E D L  A    +  + L ++T            L 
Sbjct: 619 VVKRTNLKEYGNIRSIGVRAINLDENDELVTAHIVDSHIKELFIATYQGMCIRFGVEELR 678

Query: 583 GRGHGEAIQLLIDLNHNQD--IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK- 639
             G        I    ++D  I    + + T KLL VS +G        E    +R GK 
Sbjct: 679 EIGRVSRGVTGIKFKASEDCVIAATTIANDTDKLLTVSERGIGKQTLAGEYRLQSRAGKG 738

Query: 640 -TFLKVSSE-EKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
              +K++    K+  VV +  +   + V+  + K++    + I +  R   GV++ +  D
Sbjct: 739 VIVMKLTPRTGKLVSVVNINDENMDLMVLTSSGKMIRVDTEAIRKAGRNTSGVKIVNVGD 798

Query: 695 GGISDV-ICFKICEGLTWIDSAG 716
             ++   +C K  +     D  G
Sbjct: 799 DKVAYANVCPKEPKEEDINDEEG 821


>gi|301165376|emb|CBW24947.1| DNA gyrase subunit A [Bacteriovorax marinus SJ]
          Length = 832

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/761 (31%), Positives = 383/761 (50%), Gaps = 16/761 (2%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            +N   +  +   N+  ++++  ++  YL YA+S I  RA+PD+RDG KPVHRR ++AM 
Sbjct: 4   ENNTPENGEINHGNIAPIAIQEEMKNCYLDYAMSVIIGRALPDVRDGLKPVHRRALYAMY 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +       F KSAR+VG+VIGK HPHGD +VY++LVR+AQ F  RY L+ GQGNFG+ID
Sbjct: 64  SLNNYHNKPFLKSARVVGDVIGKYHPHGDSAVYNTLVRMAQDFSMRYVLVDGQGNFGSID 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+AAA RYTE RM +++E +L+ +D+D VD++  Y++   EP V P+K PNLL NG+SG
Sbjct: 124 GDAAAAMRYTEIRMKKLSEEMLRDLDKDTVDWQPNYDDSLKEPKVLPTKVPNLLVNGSSG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ EI  A   LIDN ++++ +L+++I GPDFPT G I    E I  +
Sbjct: 184 IAVGMATNIPPHNLTEIMSALTELIDNRDMTVNELMKHIPGPDFPTAGSI-HGTEGIKSA 242

Query: 243 YRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           Y  GRG  ++RA+  +E    +    IV+TE+PYQV K++LIEKIA+L+  K I  + DI
Sbjct: 243 YHTGRGIIQIRAKVDIEVYGKQERERIVITELPYQVNKAKLIEKIADLVNNKDIEGISDI 302

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES+ +   V+    +     +++  ++  + ++  F +   +      P+VM L  +L
Sbjct: 303 RDESSREGIRVVIDLKKGEIASVIVNRLYKATQLQVSFGIIF-LSISNGSPKVMNLKEML 361

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMV 418
           + ++ HRREV+ RR+ F ++    R  IL+GL +A  NIDE++ I++  +     K  ++
Sbjct: 362 ECFIDHRREVVIRRTVFELKKAKERAHILEGLKVAVENIDEVVEIVKKSEGPADAKAKLI 421

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           SRFSL+E Q  AIL++RL+ L  LE  +I ++ + ++ E  +++ +L S       I  E
Sbjct: 422 SRFSLSEIQSQAILDMRLQRLTGLERDKIIADYEAIMKEIARLEEILGSEDLIRGIIKTE 481

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
            +E+ E +                           +       +        R+ K    
Sbjct: 482 FQEINENYGDERRTAIVAKADEIQIEDLVKNEDVLVTITHKGYIKRMTMDTYRTQKRGGK 541

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDL 596
            +      + D       A+T   IL  +  G  ++    N+  G    +      LI +
Sbjct: 542 GVKGASNADEDFFTDIFTANTHSTILFFTNRGSVFSKKVYNIPEGTRTAKGRNIANLIPV 601

Query: 597 NHNQDIVTAFVYDST-----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
                I                L+  + KG       ++     + G   +KV   + + 
Sbjct: 602 PPGDKIKEIMCIPPEDEREGKYLMFATEKGLVKKSALTDYNNIKQSGLRAIKVQDGDSVC 661

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V    G   V +   + K++ F       M R  +GV+  +  D      +   I + +
Sbjct: 662 SVRVSDGTKDVLLCSTSGKIIRFDESDARPMGRVSQGVKGINIDDDERIIGMEL-IDDSV 720

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             +      Y +           RGG G L  +   ++G+ 
Sbjct: 721 EILSITENGYGKRTAASQYRKQTRGGKGILAMRLTDKNGEI 761



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 8/218 (3%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
               G +      +   D+   +  M   E   V  S      ++K     L A+  ++G
Sbjct: 600 PVPPGDKIKEIMCIPPEDEREGKYLMFATEKGLVKKSALTDYNNIKQS--GLRAIKVQDG 657

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS+     +  T  +LL ST GK       +        + +   I+++ ++ I+   + 
Sbjct: 658 DSVCSVRVSDGTKDVLLCSTSGKIIRFDESDARPMGRVSQGV-KGINIDDDERIIGMELI 716

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTG-DHVAVV 664
           D + ++L ++  G       S+    TR GK  L +   +   ++K +  V+  D + V+
Sbjct: 717 DDSVEILSITENGYGKRTAASQYRKQTRGGKGILAMRLTDKNGEIKQIKPVSDKDDLMVI 776

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
            +  +++   I  I  M R  +GVR+   K+G     +
Sbjct: 777 TDKGQVVRTKISGISLMGRATQGVRIIKLKEGESVVSV 814



 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 2/137 (1%)

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           ++  +    R +   S  +  ++  + + +        +  IL ++ +G      A    
Sbjct: 681 IIRFDESDARPMGRVSQGVKGINIDDDERIIGMELIDDSVEILSITENGYGKRTAASQYR 740

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GK 639
                G+ I  +   + N +I           L+V++ KG     + S I    R   G 
Sbjct: 741 KQTRGGKGILAMRLTDKNGEIKQIKPVSDKDDLMVITDKGQVVRTKISGISLMGRATQGV 800

Query: 640 TFLKVSSEEKMKLVVKV 656
             +K+   E +  V K+
Sbjct: 801 RIIKLKEGESVVSVEKI 817


>gi|253582586|ref|ZP_04859807.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
 gi|251835456|gb|EES63996.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
          Length = 837

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/750 (31%), Positives = 394/750 (52%), Gaps = 14/750 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV    +   ++E YL Y++S I  RA+PD+RDG KPVHRRI+ AMSE+G+ +  A+KK
Sbjct: 2   SNVNNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++  ++  +D++ +DFR  +++   EP V P+K PNLL NG +GIAVGMAT+IP H
Sbjct: 122 RMARISNELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE++   L+EYI GPDFPTGGII   ++ I ++Y  GRG  RVR 
Sbjct: 182 NLGELVDGILALIDNPELTPLNLMEYIKGPDFPTGGIID-GQKGIRDAYMTGRGKVRVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   I++ EIPYQ+ K+ LIE+IA+L+  KR+  + D+RDES  D   V+ 
Sbjct: 241 KVEIEEQKNGKAFIIIKEIPYQLNKATLIERIADLVKDKRVTGITDLRDESDRDGIRVVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  ++++  F + M  L     P+V+ L  IL+E+L HR EV+ R
Sbjct: 301 EVKKGEEPELILNKLYKYTELQNTFGIIMLALV-NNAPKVLNLKEILQEYLKHRFEVVTR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAI 431
           R+ F +   ++R  IL+G  IA  NID II IIR          +++ +++ ++ Q  AI
Sbjct: 360 RTKFDLDKAEKRAHILQGYKIALDNIDRIIEIIRGSSDGNQARELLIEKYAFSDVQARAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   +     ++  +L+   + +  I  E+  +KE ++    
Sbjct: 420 LDMKLQRLTGLERGKIDAEHAEIEKYIAELREILSHDSKIYEIIKEELLYLKEKYNDDRR 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                     +           +       V        ++ K     +++ +  E D +
Sbjct: 480 TLIENERMEILPEDLIKDENVILTLTNKGYVKRMEVSKYKAQKRGGKGVASQNTIEDDFV 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAF--- 606
           +    A   D +++ +  G+ + +    +         + +  +I +  ++ I       
Sbjct: 540 ESIESASNLDTLMIFTNQGRVFNIKVYEIPETSKQSRGKLMSNIIRIREDEKIRAVIKTR 599

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAV 663
            +    +++ V+ +G        E       G   +K+  ++ +  V    K+  + V +
Sbjct: 600 DFSKDNEVVFVTKEGLIKKTNLDEFKNINNSGLKAIKLKEDDDIIYVGLIEKIDQEQVFI 659

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
             +    + F+ D +    R   GV+  + + G           E  + +      Y + 
Sbjct: 660 ATKQGYSIRFNSDNVRPTGRDTMGVKSITLRPGDSIVSALLIKDEDGSILTVTENGYGKR 719

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  L  R G G +  +   ++G  +S
Sbjct: 720 TRIDEYPLQARSGKGVINIRCNAKTGAVVS 749



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 133/476 (27%), Gaps = 24/476 (5%)

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + A             I+   + ++ +      K       KR  +L+  +       
Sbjct: 327 IIMLALVNNAPKVLNLKEILQEYLKHRFEVVTRRTKFDLDKAEKRAHILQGYKIALDNID 386

Query: 310 RIVLFPK--NRSLDPDLLMESIFMLSDMETR--FPLNMNVLSMGRVPQVMPLDGILKEWL 365
           RI+   +  +       L+   +  SD++ R    + +  L+     ++      +++++
Sbjct: 387 RIIEIIRGSSDGNQARELLIEKYAFSDVQARAILDMKLQRLTGLERGKIDAEHAEIEKYI 446

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           A  RE+L   S       +  + + +        + E   +    +          +LT 
Sbjct: 447 AELREILSHDSKIYEIIKEELLYLKEKYNDDRRTLIENERMEILPEDLIKDENVILTLTN 506

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                 + +      +    +  +  + +  +  +     ++                ++
Sbjct: 507 KGYVKRMEVSKYK-AQKRGGKGVASQNTIEDDFVESIESASNLDTLMIFTNQGRVFNIKV 565

Query: 486 FSKSTDLGRRR-------TTFCEVSRADKATLQQAMIEKEPITVVIS-----NRGWIRSL 533
           +       + R           E  +       +   +   +  V               
Sbjct: 566 YEIPETSKQSRGKLMSNIIRIREDEKIRAVIKTRDFSKDNEVVFVTKEGLIKKTNLDEFK 625

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLL--STDGKAYTLPAGNLLSGRGHGEAIQ 591
             ++  L A+  KE D +         D+  +   +  G +    + N+         ++
Sbjct: 626 NINNSGLKAIKLKEDDDIIYVGLIEKIDQEQVFIATKQGYSIRFNSDNVRPTGRDTMGVK 685

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +     +  +    + D    +L V+  G        E     R GK  + +    K  
Sbjct: 686 SITLRPGDSIVSALLIKDEDGSILTVTENGYGKRTRIDEYPLQARSGKGVINIRCNAKTG 745

Query: 652 LVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
            VV       G+ +  +  +  ++   +D I    R  +GV +           I 
Sbjct: 746 AVVSVLPVTEGEELMAITSSGIVIRMPLDTIALYGRATQGVIIMKVDGAEKVVSIT 801


>gi|308184486|ref|YP_003928619.1| DNA gyrase subunit A [Helicobacter pylori SJM180]
 gi|308060406|gb|ADO02302.1| DNA gyrase subunit A [Helicobacter pylori SJM180]
          Length = 833

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/764 (32%), Positives = 403/764 (52%), Gaps = 15/764 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +++ +++    +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++A
Sbjct: 1   MQDNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+
Sbjct: 61  MHELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG 
Sbjct: 121 IDGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  IV
Sbjct: 181 NGIAVGMATSIPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGG-IIYGKAGIV 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y+ GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + +
Sbjct: 240 EAYKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISE 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +
Sbjct: 299 VRDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLEL 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L  +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  +
Sbjct: 358 LCLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNTL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  
Sbjct: 418 MERFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKT 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ EVKE FS       + +     +    A     +       V   +           
Sbjct: 478 ELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVVSMSHKGYVKRVDLKAYERQNRGG 537

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               +    E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI 
Sbjct: 538 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLIS 597

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMK 651
           L  ++ I+       +     L   +  G       SE   N    G   + +   +++ 
Sbjct: 598 LAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELV 657

Query: 652 LVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
               V  +  H+ +       + F ++ + E+ R  +GV      +            +G
Sbjct: 658 GAKVVDKNAKHLLIASYLGMFIKFPLEDVREIGRHTRGVMGIRLNENDFVVGAVVISDDG 717

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  +     +           RGG G +  K   ++G  + 
Sbjct: 718 NKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKITQKTGNLVG 761



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 6/154 (3%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G     P  ++     H   +  +    ++  +    + D   KLL VS  G        
Sbjct: 676 GMFIKFPLEDVREIGRHTRGVMGIRLNENDFVVGAVVISDDGNKLLSVSENGLGKQTLAE 735

Query: 630 EIIANTRKGKTFLKVS---SEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR- 683
                +R GK  + +        +  V+ V  +   + ++  + K++  SI  I E  R 
Sbjct: 736 AYREQSRGGKGVIGMKITQKTGNLVGVISVDDENLDLMILTASAKMIRVSIKDIRETRRN 795

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             GV+L +  D  +    C K  E      S+ +
Sbjct: 796 ASGVKLINTADKVVYVNSCPKEEEPENLETSSAQ 829


>gi|86135755|ref|ZP_01054334.1| DNA topoisomerase IV, A subunit [Roseobacter sp. MED193]
 gi|85826629|gb|EAQ46825.1| DNA topoisomerase IV, A subunit [Roseobacter sp. MED193]
          Length = 781

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/783 (48%), Positives = 514/783 (65%), Gaps = 36/783 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M          + +       LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++A
Sbjct: 1   MSDTQDDTDAPMPQNGEILEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGN
Sbjct: 61  MNRLRLSSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+ AA RYTEARMT +AE +L+G++ED+VDFRD Y+   +EP V P+ FPN+LANG 
Sbjct: 121 IDGDNPAASRYTEARMTFIAEAMLEGLNEDSVDFRDNYDGRLTEPAVLPATFPNILANGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E+ +A + LI +P    + LL+Y+ GPDFPTGGIIVE R++I 
Sbjct: 181 AGIAVGMATNIPPHNIAELIDACIHLIKSPGADDDTLLKYVPGPDFPTGGIIVEPRDNIA 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG FR+R    VE++GRG W IVVTEIPYQVQKS+LIEKIAELI  K++P+L D
Sbjct: 241 KAYRTGRGSFRLRCTHEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILAD 300

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAED+RIVL PK++++DPD+LM  +F  SD+E RF LNMNVL  G  P+V  +  +
Sbjct: 301 IRDESAEDIRIVLEPKSKNVDPDVLMNMMFRNSDLELRFSLNMNVLIDGVTPKVCSMKEV 360

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--------- 411
           L+ +L HRR+VL RRS +RM  ID R+E+L G +IA+LN+D +I IIR ++         
Sbjct: 361 LRAFLDHRRDVLRRRSEYRMGKIDHRLEVLDGFIIAFLNLDRVIDIIRYDEDPKSALMRE 420

Query: 412 -------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   L+E Q +AILN+RLRSLR+LEE ++  E D L  E+
Sbjct: 421 NWGLDHPRAYEESDYVTPAPGEGELSEVQAEAILNMRLRSLRRLEEVELTKERDALREER 480

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  LL S   QW++I  ++R  K+ F K    G RR+ F E +   +    +AMI++E
Sbjct: 481 AGLVELLGSDDLQWSKITEQLRATKKQFGKDYVGGARRSRFAE-AGEVEEVPLEAMIDRE 539

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           PITVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+  ++G+ YT+ A 
Sbjct: 540 PITVVCSQMGWIRAMTGHIDLNRELKFKDGDGARFIFHAETTDRLLVFGSNGRFYTVSAA 599

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG GE ++L++DL +  +IV   +++   KLLV SS GN FI  E +I+A TR G
Sbjct: 600 NLPGGRGMGEPLRLMVDLPNEVEIVDILIHNPEGKLLVASSAGNGFICAEKDIVAQTRTG 659

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK----- 693
           K  L V  +++ ++ + VTGDHVA+V EN K L+FS++++PE++RGKGVRLQ Y      
Sbjct: 660 KQVLNVKDDDRAQICIPVTGDHVAIVSENGKFLVFSVEEMPELTRGKGVRLQKYNMARGK 719

Query: 694 ------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DGG+SD+  F   EG++W    G    R E DL  WLGKR G+G   P GFPR+
Sbjct: 720 QGSLELDGGLSDITTFNWDEGISW--EMGGGKTRHETDLSQWLGKRAGIGKRPPYGFPRN 777

Query: 748 GKF 750
            KF
Sbjct: 778 YKF 780


>gi|302669380|ref|YP_003829340.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316]
 gi|302393853|gb|ADL32758.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316]
          Length = 860

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/775 (31%), Positives = 396/775 (51%), Gaps = 26/775 (3%)

Query: 1   MGVDN-----ISNS--NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPV 53
           M  +N     + +   +    + +K V L+  +E  Y+ YA+S I  RA+PD+RDG KPV
Sbjct: 1   MADNNNINNEMPDDVFDKTTTDRIKEVDLQKTMESDYIDYAMSVIASRALPDVRDGLKPV 60

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
            RRI+++M E+        +K ARIVG+ +GK HPHGD S+Y +LV +AQP+  RY L+ 
Sbjct: 61  QRRILYSMIELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRYCLVD 120

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           G GNFG++DGD AAA RYTEAR+T+++  ++  +++D VDF   ++E + EP + PS++P
Sbjct: 121 GHGNFGSVDGDGAAAMRYTEARLTKISMEMIADINKDTVDFVPNFDETEKEPAILPSRYP 180

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPT 228
           NLL NGT+GIAVGMAT+IP HN++E+  A + +IDN      E  IE++L+ I  PDFPT
Sbjct: 181 NLLVNGTTGIAVGMATNIPPHNLREVVNAVVKMIDNRVLEDRETEIEEILDIIKAPDFPT 240

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           GGII+       E+YR GRG   VRA   +E +  G   IVVTE+PY V K+ +I KIAE
Sbjct: 241 GGIIL-GTRGAEEAYRTGRGKVIVRAVTNIEPMQNGKNRIVVTELPYLVNKANMIAKIAE 299

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
           L+  K++  +  +RDES  +   V+      ++P++++  ++  + M+  F + M  L  
Sbjct: 300 LVKLKKLDGITALRDESDREGMRVVIELRNDVNPNIMLNKLYKHTQMQDSFGIIMLALV- 358

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
              P+V+ +  +LK ++ H+ EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR
Sbjct: 359 NNEPKVLSITEMLKHYIKHQEEVVTRRTKYDLNKAEERNHILEGLLIALDNIDEVIKIIR 418

Query: 409 NEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
             +     K  ++ RF LT+ Q  AI+++RLR+L  LE  +++ E  +LL + E++ ++L
Sbjct: 419 GSETVALAKEQLMGRFGLTDVQAQAIVDMRLRTLTGLERDKLEQEHADLLKKIEELKAIL 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
              K     I  EI E+   +         +      +      +   +       +   
Sbjct: 479 ADRKVLLGVIRTEISEIANKYGDDRKSQIGQDDSDIDTEDLIPNVNTVIAMTSLGYIKRM 538

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--G 583
           +    ++       +  +   + D ++  L   T + ++  +  G+ Y L A  +     
Sbjct: 539 SIDNFKAQNRGGKGIKGITTIDNDYVEDILMTTTHNYVMFFTNTGRVYRLKAYQIPEASR 598

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
              G AI  L+ L   + I          D    L +V+ KG       ++     + G 
Sbjct: 599 TSRGMAIVNLLQLAPGEKISAMIPVKGFEDEEKCLFMVTKKGTVKKTPITDFSNVRKTGL 658

Query: 640 TFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
             + +  ++++  V  VT D  V +V +N   + F    +   SR   GVR     D   
Sbjct: 659 AAITLRDDDELIEVKTVTKDAEVFLVTKNGMCIHFDESDVRITSRSSIGVRGMMLDDTDE 718

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +     +G + +  + + Y +           RGG G    K   ++G  + 
Sbjct: 719 IVGMQLN-TQGDSLLIVSEKGYGKRTTLDEFHSQFRGGKGVKCYKITEKTGNVIG 772



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           + L++ +G        ++         ++ ++ L+   +IV   +      LL+VS KG 
Sbjct: 681 VFLVTKNGMCIHFDESDVRITSRSSIGVRGMM-LDDTDEIVGMQLNTQGDSLLIVSEKGY 739

Query: 623 AFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                  E  +  R GK      +   +   +  V  V  D  + ++     ++   +D+
Sbjct: 740 GKRTTLDEFHSQFRGGKGVKCYKITEKTGN-VIGVKAVNDDNEIMMITNAGIIIQLRMDE 798

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVIC 702
           I    R   GV++ +   G     I 
Sbjct: 799 ITIHGRVTSGVKMINLDKGVTVAKIA 824


>gi|118574932|gb|ABL07043.1| DNA gyrase subunit A [Arcobacter cibarius]
          Length = 858

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/765 (33%), Positives = 410/765 (53%), Gaps = 33/765 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +  
Sbjct: 2   ENLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNVTS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            AA+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA
Sbjct: 62  KAAYKKSARIVGDVIGKYHPHGDSSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A L LIDNP      L+E+I GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLDAILHLIDNPSAEALDLMEFIQGPDFPTGGTIF-GRRGIIDAYTTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  + E       IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  +
Sbjct: 241 RVRIRAKHHI-ETKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIEGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKEAMAEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPEILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR+       K  +  RF+L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDADAKERLEVRFNLSH 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++ +E + L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLDAEYNELMILIAELEAILRSEEKLNEIIKEELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           FS       RRT   +   +      + +I  EP+ V I++ G+++          +   
Sbjct: 479 FSNP-----RRTEIED---SYDEIDVEDLIPNEPMVVTITHNGYVKRVPIKSYEKQRRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +        G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEGSRTAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D +  L   +  G       SE       G   + +   +++  
Sbjct: 591 LRPDEKIMEIIPTSDFDESKSLAFFTRNGVVKRTSLSEFSNIRSNGVRAIVLDDADEIVT 650

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICE 707
               T    ++ +     + + F +++  E  R  +GVR   +K     + D       E
Sbjct: 651 AKIATPSTQYLMIFTSLGQCIRFDVEKTREQGRSTRGVRGIKFKIDTDFVVDADVINNIE 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +    +   +        L  R G G +  K  P++G  + 
Sbjct: 711 -QEILTVFQKGIGKRTTVEEYRLTNRAGSGVIAMKLSPKTGNIVG 754



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 3/119 (2%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             IL +   G                G  +  +       +IV   + D T  L++++S 
Sbjct: 711 QEILTVFQKGIGKRTTVEEYRLTNRAGSGVIAMKLSPKTGNIVGEVLVDDTQDLMLLTSI 770

Query: 621 GNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID 676
           G    V+   I        G   + V  ++K+  + K    D    + EN  ++ ++ D
Sbjct: 771 GKMIRVDMQTIRKAGRNTSGVIIVNVDKDDKVVSIAKCPKEDEEIELDENGNVIRYNED 829


>gi|118574924|gb|ABL07039.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/764 (32%), Positives = 411/764 (53%), Gaps = 31/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +  
Sbjct: 2   ENLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA
Sbjct: 62  KSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  + E       IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  +
Sbjct: 241 RVRIRAKHHI-ETKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKDAMSEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPQILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR+     + K  +  RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLEKRFDLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           FS             E+  +      + +I  EP+ V I++ G+++          K   
Sbjct: 479 FSNDRKT--------EIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +        G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       ++ +  L+  +  G       +E       G   + +   +++  
Sbjct: 591 LRPDEKIMEIIPTPDFEESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVT 650

Query: 653 VVK--VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEG 708
                V   ++ +     + + F +++  +  R  +GVR   +K D            E 
Sbjct: 651 AKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSED 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  + +   +        L  R G G +  K   ++G  + 
Sbjct: 711 QEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIG 754



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/491 (10%), Positives = 136/491 (27%), Gaps = 23/491 (4%)

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + A +  E        I+   + ++                 R  +LE ++       
Sbjct: 332 IILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRRTIFDLEKAKARAHILEGLKIAVDNID 391

Query: 310 RIVLFPKNRSLDPD--LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +V   ++ S D +    +E  F LS ++++  L+M +  +  + +        +  +  
Sbjct: 392 EVVRIIRSSSNDAEAKESLEKRFDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILI 451

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
                  RS  ++  I R          +     EI       D    +      +T   
Sbjct: 452 AELEAILRSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITH 511

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-----EIREV 482
              +  + +++  K +             +       +++       +        ++  
Sbjct: 512 NGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVY 571

Query: 483 KEIFSKSTDLGRRRTTFCEVSRA--DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           K         G+       +         +     E+    V  +  G I+    +    
Sbjct: 572 KIPEGSRIAKGKAVVNLINLRPDEKIMEIIPTPDFEESKSLVFFTRNGIIKRTSLNEFSN 631

Query: 541 SALH-------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL- 592
              +           + +   +    T  I++ ++ G+                  ++  
Sbjct: 632 IRSNGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGI 691

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV--SSEE 648
              ++ +  +    +     ++L VS KG        E     R   G   +K+   +  
Sbjct: 692 KFKIDTDFVVDADVISSEDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGN 751

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            +  V+      + ++    K++   ++ I +  R   GV + +         I     E
Sbjct: 752 VIGEVLVDDTQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKE 811

Query: 708 GLTW-IDSAGR 717
                +D  G 
Sbjct: 812 DEEIELDENGN 822



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 3/121 (2%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               IL +S  G                G  +  +       +++   + D T  L++++
Sbjct: 709 EDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIGEVLVDDTQDLMLLT 768

Query: 619 SKGNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI 675
           S G    V+ + I        G   + V S +K+  + K    D    + EN  ++ ++ 
Sbjct: 769 SIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDENGNVIRYNE 828

Query: 676 D 676
           D
Sbjct: 829 D 829


>gi|169836508|ref|ZP_02869696.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 833

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/750 (33%), Positives = 404/750 (53%), Gaps = 28/750 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   +E+ +  Y++S I +RA+PD+RDG KPVHRRI+++M++ G    A F KSARI+G+
Sbjct: 29  VERVMEDSFFRYSMSVIIDRALPDVRDGLKPVHRRILYSMNQNGNRSNAKFVKSARIIGD 88

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+GK HPHGD ++YDS+VRLAQ +  RY L+ GQGNFG++ GD  AA+RYTEAR+ + AE
Sbjct: 89  VMGKYHPHGDSAIYDSMVRLAQDWTMRYTLVQGQGNFGSMGGDPPAAHRYTEARLDKPAE 148

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L  ++++ VDFRD ++  + EP+V P+K PNLL NG  GIAVGMATSIP+HN+ E+ +
Sbjct: 149 ELLADIEKETVDFRDNFDGSEQEPMVLPAKLPNLLLNGQVGIAVGMATSIPTHNLGELVD 208

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A + LIDNPE +++ LL+++ GPDFPTG I+      + ++Y+ GRG   +RA   +EE 
Sbjct: 209 ATVELIDNPEATVDDLLKHVKGPDFPTGAIVYGG-APMWQAYQTGRGSVTIRAVANIEET 267

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            RG   IVVTE+PY V K+ LIEKIAEL+  K+I  + D+RDESA     V+    +   
Sbjct: 268 KRGRHRIVVTEMPYAVNKATLIEKIAELVKEKKITSISDLRDESARGNVRVVIELKKDAY 327

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P  ++  ++ L+ ++T F  NM  L  G+ P+++ L  IL E++ HRR V+ RR+ F ++
Sbjct: 328 PKKVLNQLYKLTALQTNFHYNMLALVDGKQPRILGLRDILSEFIKHRRSVVRRRTEFELK 387

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRS 438
             + R  IL+G  IA  +IDE+I  IR     +    S   RF L+E Q  AIL ++LR 
Sbjct: 388 KAEARAHILEGYKIALDHIDEVIKTIRASKTQEEAEKSLIARFGLSEIQAKAILAMQLRR 447

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE   I++EL  LLA  EK+  +L   ++  N I  E+ E+KE +       +RR+ 
Sbjct: 448 LTGLEREAIENELRELLALIEKLKGILADEQEILNIIKNELIEMKEKYGD-----QRRSK 502

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDS 550
                        + +I +E   V++++  +I+                   +  KE D 
Sbjct: 503 MINHELG--KFSDEELIPEEDSVVLLTSENYIKRTLASDYRKQNRGGKGKRGMTTKETDV 560

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY 608
           ++  + A T D +L  +  G+ + L A  + +     +  A   L+ L   + I     +
Sbjct: 561 IEHMIPAGTHDWLLFFTNRGRVFRLKAYEVPAASLQAKGVAAVNLLQLQPEEKITAIIKF 620

Query: 609 D----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAV 663
           +        L + + KG        +       G   +K+   ++++ + + +G D + +
Sbjct: 621 EKDAKDDGYLFMATVKGTIKKTPVKDYANIRTNGLIAIKLDDGDELRWIKRSSGNDDILI 680

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
                + + F+      M R  +GVR    +       +     +  T +  +   Y ++
Sbjct: 681 STSAGQAIRFNEKDARSMGRAARGVRGVRLRPNDSVVGMDIA-NDDRTLLVISENGYGKA 739

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                    KRGGVG        ++G  +S
Sbjct: 740 TKISNFPSHKRGGVGIKAAVVTAKTGPIIS 769



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 7/176 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+   +GD L+    +   D IL+ ++ G+A      +  S       ++  
Sbjct: 649 NIRTNGLIAIKLDDGDELRWIKRSSGNDDILISTSAGQAIRFNEKDARSMGRAARGVRG- 707

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           + L  N  +V   + +    LLV+S  G     + S   ++ R G   K  +  +    +
Sbjct: 708 VRLRPNDSVVGMDIANDDRTLLVISENGYGKATKISNFPSHKRGGVGIKAAVVTAKTGPI 767

Query: 651 KLVVKVTGDHV--AVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICF 703
             V  +  D +   +V    + +  S+  IP + R  +GVR+    D      +  
Sbjct: 768 ISVKTIQQDDIEALLVSTQGQTIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASVGL 823


>gi|257470426|ref|ZP_05634517.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
 gi|317064634|ref|ZP_07929119.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
 gi|313690310|gb|EFS27145.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
          Length = 834

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/750 (31%), Positives = 393/750 (52%), Gaps = 14/750 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV    +   ++E YL Y++S I  RA+PD+RDG KPVHRRI+ AMSE+G+ +  A+KK
Sbjct: 2   SNVNNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++  ++  +D++ +DFR  +++   EP V P+K PNLL NG +GIAVGMAT+IP H
Sbjct: 122 RMAKISNELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE++   L+EYI GPDFPTGGII   ++ I ++Y  GRG  RVR 
Sbjct: 182 NLGELIDGILALIDNPELTPLDLMEYIKGPDFPTGGIID-GQKGIRDAYMTGRGKVRVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   I++ EIPYQ+ KS LIE+IA+L+  KR+  + D+RDES      V+ 
Sbjct: 241 KVEIEEQKNGKASIIIKEIPYQLNKSTLIERIADLVKDKRVTGITDLRDESDRHGIRVVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  ++++  F + M  L     P+V+ L  IL E++ HR EV+ R
Sbjct: 301 EVKKGEEPELILNKLYKYTELQNTFGIIMLALV-NNAPRVLNLKEILHEYIKHRFEVVTR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAI 431
           R+ F +   ++R  IL+G  IA  NID II IIR          +++ +++ ++ Q  AI
Sbjct: 360 RTKFDLDKAEKRAHILQGYRIALDNIDRIIEIIRGSSDGNQARELLIEKYAFSDVQARAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E + +     ++  +L+   + +  I  E+  +KE ++ +  
Sbjct: 420 LDMKLQRLTGLERGKIDAEYEEIEKYIAELREILSHDSKIYEIIKEELLYLKEKYNDNRR 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                     +           +       V        ++ K     +++ +  E D +
Sbjct: 480 TLIENERMEILPEDLIKDENVILTLTNKGYVKRMEVSKYKAQKRGGKGVASQNTIEDDFV 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAF--- 606
           +    A   D +++ +  G+ + +    +         + +  +I    ++ I       
Sbjct: 540 ESIESASNLDTLMIFTNQGRVFNIKVYEIPETSKQSRGKLMSNIIRTREDEKIRAVIKTR 599

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAV 663
            +    +++ V+ +G        E       G   +K+  E+ +  V    K+  + V +
Sbjct: 600 DFSKENEVVFVTKEGLIKKTNLDEFKNINNSGLKAIKLKEEDDIIYVGLIEKIDQEQVFI 659

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
             +    + F+ D +    R   GV+  + + G           E  + +      Y + 
Sbjct: 660 ATKQGYSIRFNSDNVRPTGRDTMGVKSITLRPGDSIVSALLIKDEEGSILTVTENGYGKR 719

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  L  R G G +  +   ++G  +S
Sbjct: 720 TRIDEYPLQARSGKGVINIRCNAKTGAVVS 749



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/476 (10%), Positives = 139/476 (29%), Gaps = 24/476 (5%)

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + A             I+   I ++ +      K       KR  +L+  R       
Sbjct: 327 IIMLALVNNAPRVLNLKEILHEYIKHRFEVVTRRTKFDLDKAEKRAHILQGYRIALDNID 386

Query: 310 RIVLFPK--NRSLDPDLLMESIFMLSDMETR--FPLNMNVLSMGRVPQVMPLDGILKEWL 365
           RI+   +  +       L+   +  SD++ R    + +  L+     ++      +++++
Sbjct: 387 RIIEIIRGSSDGNQARELLIEKYAFSDVQARAILDMKLQRLTGLERGKIDAEYEEIEKYI 446

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           A  RE+L   S       +  + + +        + E   +    +          +LT 
Sbjct: 447 AELREILSHDSKIYEIIKEELLYLKEKYNDNRRTLIENERMEILPEDLIKDENVILTLTN 506

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                 + +      +    +  +  + +  +  +     ++                ++
Sbjct: 507 KGYVKRMEVSKYK-AQKRGGKGVASQNTIEDDFVESIESASNLDTLMIFTNQGRVFNIKV 565

Query: 486 FSKSTDLGRRR---------TTFCEVSRADKATLQ-----QAMIEKEPITVVISNRGWIR 531
           +       + R         T   E  RA   T       + +   +   +  +N    +
Sbjct: 566 YEIPETSKQSRGKLMSNIIRTREDEKIRAVIKTRDFSKENEVVFVTKEGLIKKTNLDEFK 625

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++ +  +    L  ++       +     +++ + +  G +    + N+         ++
Sbjct: 626 NINNSGLKAIKLKEEDDIIYVGLIEKIDQEQVFIATKQGYSIRFNSDNVRPTGRDTMGVK 685

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +     +  +    + D    +L V+  G        E     R GK  + +    K  
Sbjct: 686 SITLRPGDSIVSALLIKDEEGSILTVTENGYGKRTRIDEYPLQARSGKGVINIRCNAKTG 745

Query: 652 LVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
            VV       G+ +  +  +  ++   +D I    R  +GV +           I 
Sbjct: 746 AVVSVLPVTEGEELMAITSSGIVIRMPLDTIALYGRATQGVIIMKVDGAEKVVSIT 801


>gi|157273390|gb|ABV27289.1| DNA gyrase A subunit [Candidatus Chloracidobacterium thermophilum]
          Length = 817

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/762 (30%), Positives = 399/762 (52%), Gaps = 32/762 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ +   SL   +   YL YA+S I  RA+PD+RDG KPV RR++  M E+G  +   
Sbjct: 1   MTDQRLIPASLEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVQRRVLWTMHELGNTYDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+ IGK HPHGDQ VY+++VR+ Q F  R PLI GQGNFG++DGD+ AA RY
Sbjct: 61  YKKSARVVGDAIGKYHPHGDQPVYEAIVRMVQSFSMREPLIDGQGNFGSVDGDAPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+  +AE++L  ++++ VDFR+ Y+    EPVV P++FPN+L NG  GIAVGM+T+I
Sbjct: 121 TEVRLAPIAEMLLSDIEKETVDFRENYDGSLLEPVVLPARFPNVLVNGAMGIAVGMSTNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A + L+++P  +++ L++++ GPDFPT G  +  R  I ++Y  GRG   
Sbjct: 181 PPHNLGEVLDATIYLVNHPTATVDDLMQFVQGPDFPTAG-FICGRTGIRDAYLTGRGSVT 239

Query: 252 VRARWCVE----EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +RAR  ++    +  R    IVVTE+PYQV K+ L+EKIAEL+  K+I  + D+RDES  
Sbjct: 240 LRARAAIDYVAGKGERERQAIVVTELPYQVNKASLLEKIAELVSEKKIEGIADLRDESDR 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V+    R  D  +++ ++F  + M+++  + M  +     PQV+ L  +L  ++ H
Sbjct: 300 EGMRVVIELKRDADAKVVLNNLFKYTPMQSKLGIIMLAIV-NGRPQVLNLVEMLNYFVEH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVMVSRFSLT 424
           RREV+ RR++F ++  + RV IL+GL  A   ++ I   I   ++  + +  +++RF+L+
Sbjct: 359 RREVVRRRTAFELRKAESRVHILEGLRKALEALEAIITLIREAKSSAEAREALMTRFALS 418

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q  AIL ++L+ L  LE  ++  E + L+    ++  +L+   +    I  E++EV++
Sbjct: 419 RVQAQAILEMQLQRLTSLERQKLLEEYEGLVKRMAELREILDKEAKLREVIVQELQEVRK 478

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            +        RRT   +          + +I KE + + I+  G+I+          K  
Sbjct: 479 AYGTP-----RRTQIVDC--ESTDFTIEDLIPKEEVVITITREGYIKRTPVSAYRTQKRG 531

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI 594
            V    +  K  D ++    A T   +L+ +  G+ Y +    +      G G+AI  LI
Sbjct: 532 GVGRRGMTTKAEDEVESLYIASTHSFLLIFTAKGQVYKVRVHEIPDAATSGRGKAIVNLI 591

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L   + I        + S   ++  + +G     E SE       G   + ++ ++++ 
Sbjct: 592 ELPEGERIAGTIPVREFASGQFIVFATRRGIIKKTELSEYANIRSNGIVAMGIAEDDELV 651

Query: 652 LVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V K  G  H+ +     + + F    +    R  +G+     ++      +   +    
Sbjct: 652 AVQKSDGSRHILISTFGGQAICFKESDVRPTGRMAQGIIGIRLRENDYVTGMSV-VGRTE 710

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +  +    ++        +  RGG G        R+G  +
Sbjct: 711 DILSLSELGLSKRTPITEYPVHHRGGQGVATMYVTERTGGVI 752



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 68/195 (34%), Gaps = 7/195 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +I            S  + A+   E D L     +  +  IL+ +  G+A      ++  
Sbjct: 622 IIKKTELSEYANIRSNGIVAMGIAEDDELVAVQKSDGSRHILISTFGGQAICFKESDVRP 681

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                + I   I L  N  +    V   T  +L +S  G +     +E   + R G+   
Sbjct: 682 TGRMAQGIIG-IRLRENDYVTGMSVVGRTEDILSLSELGLSKRTPITEYPVHHRGGQGVA 740

Query: 643 KVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG- 696
            +   E+   V+K       D   V+ +  ++    +  + +  R  +GV++ +  +G  
Sbjct: 741 TMYVTERTGGVIKTLPVHEDDEFMVITQQGQVARLKVSDVRQTKRLAQGVKVIALAEGDR 800

Query: 697 ISDVICFKICEGLTW 711
           + D    ++      
Sbjct: 801 VVDACLVELSAEEPV 815


>gi|41406104|ref|NP_958940.1| DNA gyrase subunit A [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|41394452|gb|AAS02323.1| GyrA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 839

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/769 (28%), Positives = 378/769 (49%), Gaps = 24/769 (3%)

Query: 6   ISNSNTLV----EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++         + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM
Sbjct: 1   MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+ 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ 
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN+ E+ EA          + E ++  ++E + GPDFPT G ++   +
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSG-LIVGTQ 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  
Sbjct: 240 GIADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAG 299

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + 
Sbjct: 300 ISNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVD-GVPRTLR 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--- 413
           LD +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     
Sbjct: 359 LDQLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIA 418

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q  
Sbjct: 419 RQGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRG 478

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            +  E+ E+ E    +                  A     +   E      +     RS 
Sbjct: 479 IVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQ 538

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQ 591
           K     +      + D ++      T D IL  +T G+ Y   A  L        G+ + 
Sbjct: 539 KRGGKGVQGAGLNQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVA 598

Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+     + I        Y+    L++ +  G     + ++  +N   G   + +   +
Sbjct: 599 NLLAFQPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDND 658

Query: 649 KMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFK 704
           ++   V  +  D + +V  N + + FS     +  M R   GV+   +        +   
Sbjct: 659 ELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDYLLSLNV- 717

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 718 VREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 766



 Score = 84.1 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 76/205 (37%), Gaps = 12/205 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ +  G ++  K    D +        + ++ D L  A+     D +LL+S 
Sbjct: 618 YEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSA 677

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           +G++    A +      G   +    +  N +  +++  V      LLV +S G A    
Sbjct: 678 NGQSIRFSATDEALRPMGRATSGVQGMRFNADDYLLSLNVVREGTYLLVATSGGYAKRTA 737

Query: 628 ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
             E     R GK  L V       ++   + V  D  +  +     ++  +  Q+ +  R
Sbjct: 738 IEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGR 797

Query: 684 -GKGVRLQSYKDGGISDVICFKICE 707
             KGVRL +  +G     I     E
Sbjct: 798 QTKGVRLMNLGEGDTLLAIARNAEE 822


>gi|317012514|gb|ADU83122.1| DNA gyrase subunit A [Helicobacter pylori Lithuania75]
          Length = 828

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/767 (33%), Positives = 411/767 (53%), Gaps = 31/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDRLVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRMDEIIDALVHVLENPNTGLDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILRSEDRLNGVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE FS       RRT   E     +    + +I  EP+ V +S +G+++           
Sbjct: 478 KEQFSSP-----RRTEIQE---VYENIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  +    E D ++    A+T D +L ++  G+ Y L    +        G+A+  
Sbjct: 530 RGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEE 648
           LI L  ++ I+       +     L   +  G       SE  +N    G   + +   +
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGD 649

Query: 649 KMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++     V  +  H+ +       + F ++ + EM R  +GV      +           
Sbjct: 650 ELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVIS 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +G   +  +     +           RGG G +  K   ++G  + 
Sbjct: 710 GDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVG 756



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 6/160 (3%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G     P  ++     +   +  +    ++  +    +     KLL VS  G
Sbjct: 663 HLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVISGDGNKLLSVSENG 722

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSID 676
                        +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI 
Sbjct: 723 LGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVGVISVDDENLDLMILTASAKMIRVSIK 782

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            I E  R   GV+L +  D  +    C K  E      S+
Sbjct: 783 DIRETGRNASGVKLINTADKVVYVNSCPKEEEPENLETSS 822


>gi|157738015|ref|YP_001490699.1| DNA gyrase subunit A [Arcobacter butzleri RM4018]
 gi|118574920|gb|ABL07037.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|157699869|gb|ABV68029.1| DNA gyrase, subunit A [Arcobacter butzleri RM4018]
          Length = 860

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/764 (32%), Positives = 412/764 (53%), Gaps = 31/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +  
Sbjct: 2   ENLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA
Sbjct: 62  KSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQGNFGSIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  + E       IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  +
Sbjct: 241 RVRIRAKHHI-ETKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKDAMSEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPQILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR+     + K  + +RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDAEAKESLENRFDLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           FS             E+  +      + +I  EP+ V I++ G+++          K   
Sbjct: 479 FSNDRKT--------EIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +        G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D +  L+  +  G       +E       G   + +   +++  
Sbjct: 591 LRPDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVT 650

Query: 653 VVK--VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEG 708
                V   ++ +     + + F +++  +  R  +GVR   +K D            E 
Sbjct: 651 AKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSED 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  + +   +        L  R G G +  K   ++G  + 
Sbjct: 711 QEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIG 754



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/491 (10%), Positives = 137/491 (27%), Gaps = 23/491 (4%)

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + A +  E        I+   + ++                 R  +LE ++       
Sbjct: 332 IILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRRTIFDLEKAKARAHILEGLKIAVDNID 391

Query: 310 RIVLFPKNRSLDPD--LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +V   ++ S D +    +E+ F LS ++++  L+M +  +  + +        +  +  
Sbjct: 392 EVVKIIRSSSNDAEAKESLENRFDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILI 451

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
                  RS  ++  I R          +     EI       D    +      +T   
Sbjct: 452 AELEAILRSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITH 511

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-----EIREV 482
              +  + +++  K +             +       +++       +        ++  
Sbjct: 512 NGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVY 571

Query: 483 KEIFSKSTDLGRRRTTFCEVSRA--DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           K         G+       +         +     ++    V  +  G I+    +    
Sbjct: 572 KIPEGSRIAKGKAVVNLINLRPDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSN 631

Query: 541 SALH-------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL- 592
              +           + +   +    T  I++ ++ G+                  ++  
Sbjct: 632 IRSNGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGI 691

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV--SSEE 648
              ++ +  +    +     ++L VS KG        E     R   G   +K+   +  
Sbjct: 692 KFKIDTDFVVDADVISSEDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGN 751

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            +  V+      + ++    K++   ++ I +  R   GV + +         I     E
Sbjct: 752 VIGEVLVDDTQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKE 811

Query: 708 GLTW-IDSAGR 717
                +D  G 
Sbjct: 812 DEEIELDENGN 822



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 3/121 (2%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               IL +S  G                G  +  +       +++   + D T  L++++
Sbjct: 709 EDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIGEVLVDDTQDLMLLT 768

Query: 619 SKGNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI 675
           S G    V+ + I        G   + V S +K+  + K    D    + EN  ++ ++ 
Sbjct: 769 SIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDENGNVIRYNE 828

Query: 676 D 676
           D
Sbjct: 829 D 829


>gi|257062760|ref|YP_003142432.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476]
 gi|256790413|gb|ACV21083.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476]
          Length = 838

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/772 (32%), Positives = 401/772 (51%), Gaps = 32/772 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I  +       V+   L   +   +L Y++S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MSDKEILEAADSGNTGVQTAELGREMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G+       KSAR VG+VIGK HPHGD +VYD++VRLAQ F  R PL+ G GNFG+
Sbjct: 61  MYDSGITPNKPHSKSARTVGDVIGKYHPHGDSAVYDAMVRLAQDFNMRVPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAA RYTEAR+ + A  +L  + ++ VD+   Y+E   EP V P++FPNLL NG+
Sbjct: 121 IDGDSAAAMRYTEARLAKPAMELLADLGKETVDWVPNYDESLQEPSVLPARFPNLLVNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E  +A   ++DNP+++ E+L+E + GPDFPTGG ++  RE I+
Sbjct: 181 NGIAVGMATNIPPHNLGEAIDATCLMLDNPDVTTEELMEVMPGPDFPTGG-VIRGREGII 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +++ + ++E   G   I++TEIPYQV +S L++KI EL+  K++P + +
Sbjct: 240 SAYETGRGSLTIQSSYKIKEGKNGKTSIIITEIPYQVNRSNLMQKIGELVRDKKLPEISN 299

Query: 301 IRDESAEDVRI-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +  +  + ++    ++  P +++  +F  + ++  + + M  L    VP+ + L  
Sbjct: 300 VHDGADRNSPVDIIIELKQNAIPQVVLNKLFKHTQLQVGWGVIMIALVD-GVPRTLSLRE 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL  ++ H+ +V+ RR+ F ++  + R  I++GLLIA  +IDE+IAIIR     K     
Sbjct: 359 ILHYYILHQEDVIRRRTQFDLEKAEARAHIVEGLLIALDHIDEVIAIIRGSRTDKEASDK 418

Query: 420 ---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              RF L+E Q  AIL ++LR L  LE  +++ EL  L  +      +L         I 
Sbjct: 419 LSERFGLSEAQCTAILQMQLRRLTGLEREKLQEELAELKEKIAYYKRILADEHLMRQVIK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E++E+K  F+       RRT     ++       + +I  E + V ++N G+I+     
Sbjct: 479 EELQEIKGRFNTP-----RRTRIAGPAKD---IDVEDLIADEEMVVTMTNAGYIKRLPVT 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGH 586
                K     +  ++ KE D ++    A T + +L  S+ GK Y      +        
Sbjct: 531 TYRQQKRGGKGMQGVNLKENDFVEHLFIASTHNYMLFFSSAGKVYRKKVFEIPEAGRHAR 590

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G A+  L+ L+  + IV A     +     L+  + +G       S      + G   + 
Sbjct: 591 GTAVVNLLKLDKGESIVAAIATKEFPEDEFLMFGTKEGMVKKTAMSLYDRTRQDGLIAIN 650

Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   +++  V +V  G+ VA+V    K + +   ++  M R   GVR  +  DG    V+
Sbjct: 651 LREGDELIAVKRVKPGEKVAMVSSAGKAISWDESEVRAMGRDTMGVRGMTVPDG--VHVL 708

Query: 702 CFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +I   G        R Y +        L  RGG G        + G+  +
Sbjct: 709 GLEIASPGKEIFVITERGYGKRTPVEEYPLHHRGGQGVFTITMTAKKGQLAA 760



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 71/201 (35%), Gaps = 8/201 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +  M   +   V  +        +     L A++ +EGD L         +++ ++S+ G
Sbjct: 619 EFLMFGTKEGMVKKTAMSLYDRTR--QDGLIAINLREGDELIAVKRVKPGEKVAMVSSAG 676

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           KA +     + +       ++ +  +     ++   +     ++ V++ +G        E
Sbjct: 677 KAISWDESEVRAMGRDTMGVRGM-TVPDGVHVLGLEIASPGKEIFVITERGYGKRTPVEE 735

Query: 631 IIANTRKG----KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-K 685
              + R G       +     +   + V  + D + ++ E   ++  S+  I ++ R  +
Sbjct: 736 YPLHHRGGQGVFTITMTAKKGQLAAMKVVTSEDALMIISEEGVVMRTSVSDISQLGRATQ 795

Query: 686 GVRLQSYKDGGISDVICFKIC 706
           GV++ +         +     
Sbjct: 796 GVKVMNVDGKDRVSAVAIAPD 816



 Score = 41.3 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 45/410 (10%), Positives = 111/410 (27%), Gaps = 7/410 (1%)

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-- 311
           +R   E   + S    ++E          + ++  L   K    L +++++ A   RI  
Sbjct: 409 SRTDKEASDKLSERFGLSEAQCTAILQMQLRRLTGLEREKLQEELAELKEKIAYYKRILA 468

Query: 312 -VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
                +    +    ++  F             ++     +     +  +       R  
Sbjct: 469 DEHLMRQVIKEELQEIKGRFNTPRRTRIAGPAKDIDVEDLIADEEMVVTMTNAGYIKRLP 528

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           V   R   R     + V + +   + +L I      +        V   +          
Sbjct: 529 VTTYRQQKRGGKGMQGVNLKENDFVEHLFIASTHNYMLFFSSAGKVYRKKVFEIPEAGRH 588

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
                + +L KL++ +            E    +  + +    + A  + +         
Sbjct: 589 ARGTAVVNLLKLDKGESIVAAIATKEFPEDEFLMFGTKEGMVKKTAMSLYDRTRQDGLIA 648

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
              R       V R         +               +R++   ++ +  +   +G  
Sbjct: 649 INLREGDELIAVKRVKPGEKVAMVSSAGKAISWD--ESEVRAMGRDTMGVRGMTVPDGVH 706

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           +     A     I +++  G     P          G+ +  +        +    V  S
Sbjct: 707 VLGLEIASPGKEIFVITERGYGKRTPVEEYPLHHRGGQGVFTITMTAKKGQLAAMKVVTS 766

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
              L+++S +G       S+I    R   G   + V  ++++  V     
Sbjct: 767 EDALMIISEEGVVMRTSVSDISQLGRATQGVKVMNVDGKDRVSAVAIAPD 816


>gi|126432620|ref|YP_001068311.1| DNA gyrase subunit A [Mycobacterium sp. JLS]
 gi|126232420|gb|ABN95820.1| DNA gyrase subunit A [Mycobacterium sp. JLS]
          Length = 836

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/775 (29%), Positives = 384/775 (49%), Gaps = 36/775 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM +
Sbjct: 3   DTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFD 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G        KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   
Sbjct: 63  SGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGN 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GI
Sbjct: 123 DPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+ +A    ++N     E ++  ++E + GPDFPT G ++   + I
Sbjct: 183 AVGMATNIPPHNLRELADAVYWCLENFEADEETTLAAVMERVKGPDFPTHG-LIVGSQGI 241

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y+ GRG  ++R    +EE  RG   IV+TE+PYQV     I  IAE +   ++  + 
Sbjct: 242 EDTYKTGRGSVKMRGVVEIEEDSRGRTGIVITELPYQVNHDNFITSIAEQVRDGKLAGIS 301

Query: 300 DIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + LD
Sbjct: 302 NIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLRLD 360

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KP 415
            +++ ++ H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR        + 
Sbjct: 361 QMIRYYVEHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +
Sbjct: 421 GLIELLDIDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIADLEDILAKPERQRAIV 480

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E++E+ + +        RRT       AD     + +I +E + V I+  G+ +    
Sbjct: 481 RDELKEIADKYGD-----DRRTRIV---PADGEVSDEDLIAREDVVVTITETGYAKRTKT 532

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRG 585
                 K     +     K+ D +       T D IL  +T G+ Y   A  L       
Sbjct: 533 DLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTA 592

Query: 586 HGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ +  L+    N+ I        Y+    L++ +  G       ++  +N   G   +
Sbjct: 593 RGQHVANLLAFQPNERIAQVIQIKSYEDAPYLVLATRNGLVKKSRLTDFDSNRSGGIVAV 652

Query: 643 KVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGIS 698
            +   +++   V   + D + +V    + + FS     +  M R   GV+   +      
Sbjct: 653 NLRDGDELVGAVLCSSEDDLLLVSAKGQSIRFSATDEALRPMGRATSGVQGMRFNADDEL 712

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +     +    + +    Y +  +        RGG G L  +   R G  + +
Sbjct: 713 LSLNVVRPD-TYLLVATSGGYAKRTSIEEYTAQGRGGKGILTIQYDRRRGNLVGA 766



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 6/161 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
             + D +LL+S  G++    A +      G   +    +  N + ++++  V      LL
Sbjct: 666 CSSEDDLLLVSAKGQSIRFSATDEALRPMGRATSGVQGMRFNADDELLSLNVVRPDTYLL 725

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLL 671
           V +S G A      E  A  R GK  L +  + +   +   + V  D  +  +     ++
Sbjct: 726 VATSGGYAKRTSIEEYTAQGRGGKGILTIQYDRRRGNLVGALIVDDDTELYAITSGGGVI 785

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             +  Q+ +  R  KGVRL +  +G     I      G + 
Sbjct: 786 RTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEAGDST 826



 Score = 44.4 bits (103), Expect = 0.080,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 2/131 (1%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F   D L           +L+ ++ G A         +    
Sbjct: 688 DEALRPMGRATSGVQGMRFNADDELLSLNVVRPDTYLLVATSGGYAKRTSIEEYTAQGRG 747

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
           G+ I  +       ++V A + D   +L  ++S G        ++    R  KG   + +
Sbjct: 748 GKGILTIQYDRRRGNLVGALIVDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNL 807

Query: 645 SSEEKMKLVVK 655
              + +  + +
Sbjct: 808 GEGDTLIAIAR 818


>gi|157825225|ref|YP_001492945.1| DNA topoisomerase IV subunit A [Rickettsia akari str. Hartford]
 gi|157799183|gb|ABV74437.1| DNA topoisomerase IV subunit A [Rickettsia akari str. Hartford]
          Length = 737

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/739 (50%), Positives = 530/739 (71%), Gaps = 4/739 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLKLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT++  L++  +D+D VDFR TY++ D EP++ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTEICTLLMVDIDKDTVDFRPTYDDSDLEPIIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LID+P   I  ++ +I GPDFPTGGII++  E I  +Y  GRG FR
Sbjct: 181 PPHNLHELCDALIHLIDHPNAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYNTGRGSFR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  E +  G++ IVVTEIPYQVQKS+LIE++A L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEALSYGTYQIVVTEIPYQVQKSKLIEQVAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  +L+E+LAHR+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EIL GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI
Sbjct: 361 VTRRSTYLVNKIKHRLEILAGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE++I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEHEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKAVQMQFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A + KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGDRRTSFEEVTLTNQVVDITAFVTKEPITIICSKMGWVRSLKGHNTDLSNIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    V+   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNIPKGKGTGESIKLLVDIGNN-DITNILVHKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E+IA T+ GK  + V         + V GD VA +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVIAQTKTGKQVMNVPDGHACIACLHVAGDAVACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F++D+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNVDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLCW---NNNGKVKLEKNIIAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           +RG  G L P GFP++ +F
Sbjct: 717 QRGSTGKLPPMGFPKNNRF 735


>gi|157964133|ref|YP_001498957.1| DNA topoisomerase IV subunit A [Rickettsia massiliae MTU5]
 gi|157843909|gb|ABV84410.1| Topoisomerase IV subunit A [Rickettsia massiliae MTU5]
          Length = 737

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/739 (50%), Positives = 529/739 (71%), Gaps = 4/739 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F+ RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFLLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT +  L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTDICTLLMEDIDKDTVDFRPTYDDADLEPVIMPAGFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LID+P+  I  ++ +I GPDFPTGGII++  E I  +Y  GRG  R
Sbjct: 181 PPHNLHELCDALIHLIDHPKAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLDHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
            N RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EIR V+  F  +T 
Sbjct: 421 FNTRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKVVKKEIRTVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           KRG  G L P GFP++ +F
Sbjct: 717 KRGSTGKLPPMGFPKNNRF 735


>gi|146329479|ref|YP_001209241.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A]
 gi|146232949|gb|ABQ13927.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A]
          Length = 861

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/793 (29%), Positives = 382/793 (48%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+        +  V+L   +   YL YA+S I  RA+PD RDG KPVHRR++ +M + G
Sbjct: 1   MSDF----AREIVPVNLIDEMRSSYLDYAMSVIIGRALPDARDGLKPVHRRVLFSMHKQG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
             +   + KSA IVG+V+GK HPHGD ++YD+LVR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 57  NAWNKKYSKSATIVGDVMGKYHPHGDSAIYDTLVRMAQPFSMRYVLVDGQGNFGSIDGDA 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE+RM ++A  +L  ++++ VDF   Y+    EP V P+  PNLL NG+SGIAV
Sbjct: 117 PAAMRYTESRMAKIAHSLLTDIEKETVDFMPNYDGSQEEPTVLPTLIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H++ E  +A L L+D+PE ++  L+ Y+ GPDFPTG  ++   + I E+Y  
Sbjct: 177 GMATNIPPHHLGETLDAVLFLMDHPEATVSDLMHYLPGPDFPTGA-LINGTKGIYEAYET 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           G+G   +RA+  +E +   G   IVV E+PYQV K+ L+ KIAEL+  K+I  +  +RDE
Sbjct: 236 GKGRIYIRAKTHIETDEHHGKQTIVVDELPYQVNKAVLLAKIAELVKDKKIDGITALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++  +F  + ++T F +NM  L  G  P+++ L  +L  +
Sbjct: 296 SDKDGIRMVIEVRRGEVAEVILNQLFQQTQLQTTFSVNMVALV-GGQPKLLGLKSLLNVF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------- 416
           +AHRREV+ RR+ + ++    R  IL+GL +A  NID+II++I++  +P           
Sbjct: 355 IAHRREVVTRRTIYELRKARERAHILEGLAVALSNIDDIISVIKSAAEPAKAKELLLSQA 414

Query: 417 -----------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                            + L+  Q  AIL+LRL  L  LE+ +I
Sbjct: 415 WLAEHVAVMLAHAGAENSRPEQLAEEYGLHAGGYYLSPEQAQAILDLRLHRLTGLEQEKI 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E  +++ + E   ++L+  ++    I  E+  +K  F+         T          
Sbjct: 475 IEEYQSIIRDIEGFLAILHIPERLVAVIKEELLAIKAQFNDQRCTHILDTHLDLSMEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           A   + +       +         + +      S    K+ D ++    A+T D +L  S
Sbjct: 535 AEEDRVITLSHEGYIKAQPLSDYEAQRRGGKGKSVTAIKDQDFVEQLFIANTHDTMLCFS 594

Query: 568 TDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
             GK Y L    L        G+ I  L+    ++ +        Y     L   +  G 
Sbjct: 595 NKGKVYWLKVYELPHASRNAKGKPIVNLLPFEADERLNAILTTREYPEDLYLFFATQNGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
                 SE       G   + +  ++++  V    G+ ++ +     K + FS + +  M
Sbjct: 655 VKKTPLSEYSRPRANGIIAINLRDDDQLVDVELTNGERNIMLFSNAGKAVRFSEETVRSM 714

Query: 682 SRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR    + G     +C    +G   +      Y +           RG  G + 
Sbjct: 715 GRAAGGVRGMRLEAGQKVIALCVLKDQGD-ILTITENGYGKRTPTADYPQKGRGTKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
                R+G  + +
Sbjct: 774 IMCSERNGNAVYA 786



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/349 (10%), Positives = 96/349 (27%), Gaps = 21/349 (6%)

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            +L        +         +      +   +  +I   +   I A   ++ + +    
Sbjct: 505 ELLAIKAQFNDQRCTHILDTHLDLSMEDLIAEEDRVITLSHEGYIKAQPLSDYEAQRRGG 564

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
              S+T  +    +      +    +  +       +   +  +    S   +   I   
Sbjct: 565 KGKSVTAIKDQDFVEQLF--IANTHDTMLCFSNKGKVYWLKVYELPHASRNAKGKPIVNL 622

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +           +   R           +          +  TV  +        +++  
Sbjct: 623 L---------PFEADERLNAILTTREYPEDLY--LFFATQNGTVKKTPLSEYSRPRAN-- 669

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            + A++ ++ D L      +    I+L S  GKA        +   G        + L  
Sbjct: 670 GIIAINLRDDDQLVDVELTNGERNIMLFSNAGKAVRFS-EETVRSMGRAAGGVRGMRLEA 728

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVV 654
            Q ++   V      +L ++  G       ++     R  K  + +     +   +  + 
Sbjct: 729 GQKVIALCVLKDQGDILTITENGYGKRTPTADYPQKGRGTKGVISIMCSERNGNAVYAIQ 788

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               + + +V +N  L+   + +I    R  +GVRL    +        
Sbjct: 789 VCEDEDIMLVTDNGTLVRTRVCEISTSGRNTQGVRLIRTAESEKVIAAA 837


>gi|312137524|ref|YP_004004860.1| DNA gyrase subunit a [Rhodococcus equi 103S]
 gi|325677511|ref|ZP_08157175.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi
           ATCC 33707]
 gi|111185876|dbj|BAF02675.1| DNA gyrase subunit A [Rhodococcus equi]
 gi|311886863|emb|CBH46171.1| DNA gyrase subunit A [Rhodococcus equi 103S]
 gi|325551758|gb|EGD21456.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi
           ATCC 33707]
          Length = 839

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/775 (30%), Positives = 385/775 (49%), Gaps = 36/775 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D          + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM +
Sbjct: 3   DTTLPPEEPSHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYD 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      + KSAR V + +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   
Sbjct: 63  NGYRPDRGYVKSARPVADTMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSRGN 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE RMT +A  +++ +D D VDF   Y+ +  EP V PS+ PNLL NG+ GI
Sbjct: 123 DGAAAMRYTECRMTPLAMEMVREIDHDTVDFVPNYDGKTQEPTVLPSRIPNLLVNGSGGI 182

Query: 184 AVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+ EA          + E ++E ++E + GPDFPT G+IV   + I
Sbjct: 183 AVGMATNIPPHNLREVAEAIYWALDNHEADEEATLEAVMERVKGPDFPTSGLIVGG-QGI 241

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG  R+R    +EE  RGS  IV+TE+PYQV    LI  IAE +   +I  + 
Sbjct: 242 QDAYRTGRGSIRMRGVVEIEESDRGSTQIVITELPYQVNPDNLITSIAEQVRDGKIAGIS 301

Query: 300 DIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            I D+ S      ++    R     +++ +++  S ++T F  NM  +    VP+ + LD
Sbjct: 302 KIEDQSSDRVGMRIVVVIKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVD-GVPRTLRLD 360

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            +++ ++AH+ EV+ RR+ + ++  + R  IL+GL+ A   +DE+IA+IR+         
Sbjct: 361 QMIRYYVAHQLEVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRSSQTVDVART 420

Query: 419 SRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
                  + E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   +
Sbjct: 421 GLMDLLTVDEIQADAILAMQLRRLAALERQKIIDELAEIEREIADLKDILEKPERQRQIV 480

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+ E+ E +        RRT       AD     + +I +E + V I+  G+ +    
Sbjct: 481 KDELSEIVEKYGD-----DRRTRII---AADGDVTDEDLIAREDVVVTITETGYAKRTRT 532

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRG 585
                 K     +     K+ D +K      T D +L  +T G+ Y   A  L   +   
Sbjct: 533 DLYRSQKRGGKGVKGAELKQEDIVKNFFVCSTHDWLLFFTTKGRVYRAKAYELPEANRTA 592

Query: 586 HGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ +  L+    ++ I +      Y+    L++ +  G       ++  +N   G   +
Sbjct: 593 RGQHVANLLAFQPDEKIQSIIHIKSYEDAPYLVLATRNGLVKKSRLADFDSNRSGGIVAI 652

Query: 643 KVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGIS 698
            +  E+++   V   + D + +V    + + F+     +  M R   GV+   +      
Sbjct: 653 NLRDEDELVGAVLCSSDDDLLLVSAKGQSIRFAATDEALRPMGRATSGVQGMRFNQDDEL 712

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + EG   + +    Y +           RGG G L  +  P+ G  + +
Sbjct: 713 LSLNV-VREGTYLLVATSGGYAKRTPIEDYVAQGRGGKGVLTIQYDPKRGTLVGA 766



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 82/213 (38%), Gaps = 12/213 (5%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTT 560
           ++ +     E  P  V+ +  G ++  +    D +        + ++ D L  A+   + 
Sbjct: 610 QSIIHIKSYEDAPYLVLATRNGLVKKSRLADFDSNRSGGIVAINLRDEDELVGAVLCSSD 669

Query: 561 DRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           D +LL+S  G++    A +      G   +    +  N + ++++  V      LLV +S
Sbjct: 670 DDLLLVSAKGQSIRFAATDEALRPMGRATSGVQGMRFNQDDELLSLNVVREGTYLLVATS 729

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVA-VVGENRKLLIFSI 675
            G A      + +A  R GK  L +  + K   +   V V  D     +     ++  + 
Sbjct: 730 GGYAKRTPIEDYVAQGRGGKGVLTIQYDPKRGTLVGAVIVDDDDELYAITSGGGVIRTAA 789

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            Q+ +  R  KGVRL +  +G     I     E
Sbjct: 790 KQVRKAGRQTKGVRLMNLGEGDTLLAIARNADE 822


>gi|291521102|emb|CBK79395.1| DNA gyrase subunit A [Coprococcus catus GD/7]
          Length = 849

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/758 (30%), Positives = 389/758 (51%), Gaps = 18/758 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  + + +  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+     
Sbjct: 2   DDKIFDKIHEVDLKERMETFYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA 
Sbjct: 62  KPHRKCARIVGDAMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSMDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++++  ++  +++D VDF+  ++E + EPVV PS++PNLL NGT+GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMMADINKDTVDFQPNFDETEKEPVVLPSRYPNLLVNGTTGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           +IP HN++E  +  + +ID     N E +IE+L+E I GPDFPTG +I+  +  I ++YR
Sbjct: 182 NIPPHNLRETIDGVIKIIDNRVEENRETTIEELMEIIKGPDFPTGAMIL-GKNGINQAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  +VRA   +E +  G   IV TE+PY V K++LIEKIAEL+  KRI  + D+RDE
Sbjct: 241 TGRGKLKVRAVTDIETMPNGRHRIVATELPYMVNKAKLIEKIAELVKDKRIEGISDLRDE 300

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S+ +   V+    +  +P++++  ++  + ++  + + M  L     P ++ L  +L+ +
Sbjct: 301 SSREGLRVVIELKKDANPNVVLNQLYKHTQLQDTYGVIMLALV-NNQPMILNLKQMLELY 359

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRF 421
           L H+ EV+ RR+ F +   + R  IL+GLLIA  +IDE+I+IIR+          ++  F
Sbjct: 360 LKHQEEVVTRRTRFELNKAEERAHILQGLLIALDHIDEVISIIRSSKNVAEAKTRLMETF 419

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q  AI+++RLR+L  LE  +I++E + L+    ++ ++L   K     I  EI+ 
Sbjct: 420 GLTEVQAQAIVDMRLRALTGLEREKIENEYNELMKRIGELKAILADEKLLLGVIREEIKL 479

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           +++ +                           +   +   +        RS       + 
Sbjct: 480 IRDKYGDDRKTSLGVDDDEITVEDLIKRENTVIAMTQLGYIKRMTMDNFRSQNRGGRGIK 539

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHN 599
            +   + D +   + A+T D IL  +  G+ + L    +        G A+  L+ L   
Sbjct: 540 GMTKLDEDCITELMMANTHDYILFFTNKGRVFRLKGYEIPEASRIARGTALINLLQLEPG 599

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + +        Y++   L + +  G        E I   + G   + +  ++++  V   
Sbjct: 600 EKVTATIPLEKYENDKYLFMATKNGMVKKTSIMEYINVRKTGLLAIGLREDDELIEVKVT 659

Query: 657 TGDHVA-VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDS 714
               +  +V +    + F  D +    R   GV         +   +     +G   +  
Sbjct: 660 DESDLIYLVSQKGMSICFKQDNVRATGRTSMGVIGMDLDADDLIVGMQVS-SQGEAVLIV 718

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + +   +        +  RGG G    K   ++G  + 
Sbjct: 719 SEKGLGKRTMLEEFNVQNRGGKGLKCYKITDKTGLVVG 756



 Score = 57.9 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 6/182 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
               +  +      L A+  +E D L        +D I L+S  G +      N+ +   
Sbjct: 628 KTSIMEYINVRKTGLLAIGLREDDELIEVKVTDESDLIYLVSQKGMSICFKQDNVRATGR 687

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
               +  + DL+ +  IV   V      +L+VS KG        E     R GK      
Sbjct: 688 TSMGVIGM-DLDADDLIVGMQVSSQGEAVLIVSEKGLGKRTMLEEFNVQNRGGKGLKCYK 746

Query: 646 SEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
             +K   +  V  V   D + ++     ++   ++ I  + R   GV+L    +G +   
Sbjct: 747 ITDKTGLVVGVKCVNAEDELMIITTGGIIIRMPVEGISILKRITSGVKLIQLDEGSVVAS 806

Query: 701 IC 702
           I 
Sbjct: 807 IA 808


>gi|229917450|ref|YP_002886096.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b]
 gi|229468879|gb|ACQ70651.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b]
          Length = 855

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/749 (30%), Positives = 388/749 (51%), Gaps = 33/749 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +EN+K +++   +   ++ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G+      K
Sbjct: 4   QENIKDINISQEMRTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGIRADKPHK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 64  KSARVVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +++ + ++ +D++  ++ E+ EPVV P++FPN L NGTSGIAVGMAT++P 
Sbjct: 124 ARMSKIAMELVRDIGKNTIDYQPNFDGEEKEPVVLPARFPNFLVNGTSGIAVGMATNVPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LAL  NP+I+I +L+++I GPDFPT G I+  R  I  +Y  GRG   +R
Sbjct: 184 HNLNEVIDGVLALSHNPDITIAELMQHIPGPDFPTAGEIL-GRSGIRRAYETGRGSITMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E +  G   I+V EIPYQV K+RL+EKIA+L+  K+I  + D+RDES  +   ++
Sbjct: 243 AKAEIEVLKNGRERILVHEIPYQVNKARLVEKIADLVRDKKIEGITDLRDESDRNGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +  +++ +++  + M+T F +NM  L  G  P+ + +   +  ++ H++EV+ 
Sbjct: 303 IEVRRDANASVILNNLYKQTPMQTTFGVNMLALV-GGRPKTLNIKQAIYYYIEHQKEVVR 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVMVSRFSLTENQVDA 430
           RR+ F +   + R  IL+GL +A  ++DE+   I   R  D+ +  +++RF L+  Q  A
Sbjct: 362 RRTQFDLDKAEARAHILEGLRVALDHLDEVIAIIRSTRTGDEAREKLIARFGLSTEQTQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E   + A  E++ ++L   +   + I  E+ E+KE +  + 
Sbjct: 422 ILDMRLQRLTGLEREKIEGEYREVKALIEELRAILGDEELLLDIIRNELIEIKERYGDAR 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               R                  +       +        R+ +        +   + D 
Sbjct: 482 RTVIRTDIVELEDEDLIPVRDMMITLTSEGYIKSIPSDSYRTQRRGGRGKQGMGTNDEDF 541

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY 608
           +   L A T D IL  +  G+ + L    +       +   I  L+ ++  + + T    
Sbjct: 542 VLRLLSASTHDTILFFTNFGRVFRLKGYEIPEMSRTAKGMPIINLLQIDKGEKVETMIPV 601

Query: 609 DSTCK-----------------------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           D                           L+ ++ +G       S      + G   + ++
Sbjct: 602 DFNSYLANQTVAEETQDESEEVADEQLSLVFITKEGLIKRSPLSAYARINKNGLRAISLN 661

Query: 646 SEEKMKLVVKV-TGDHVAVVGENRKLLIFSID-QIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +++  V    + D + +V      + F ++ ++  M R  +GVR    K      V  
Sbjct: 662 ETDELVTVRLAKSDDEMLIVTRQGMSIRFPLEGEVRSMGRTARGVRAIRLKKEDDLVVSM 721

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLG 731
             +      +    + Y +          
Sbjct: 722 EIVRTTQDVLIITEKGYGKRTAMEQFRTQ 750



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 67/181 (37%), Gaps = 4/181 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           + +   L A+   E D L     A + D +L+++  G +   P    +   G        
Sbjct: 649 RINKNGLRAISLNETDELVTVRLAKSDDEMLIVTRQGMSIRFPLEGEVRSMGRTARGVRA 708

Query: 594 IDLNHNQD-IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMK 651
           I L    D +V+  +  +T  +L+++ KG        +     R G   + +      + 
Sbjct: 709 IRLKKEDDLVVSMEIVRTTQDVLIITEKGYGKRTAMEQFRTQGRGGSGIIGIKTDRGTVV 768

Query: 652 LVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            +  V   D + ++ E    +      I +M R  +GV++ + ++G     I     + L
Sbjct: 769 GMRVVDEDDDIMLMTELGVAIRIDSQTISQMGRSTRGVKVMNIEEGDRLATIAKLKKDEL 828

Query: 710 T 710
            
Sbjct: 829 E 829


>gi|169823703|ref|YP_001691314.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328]
 gi|167830508|dbj|BAG07424.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328]
          Length = 806

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/748 (34%), Positives = 402/748 (53%), Gaps = 15/748 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K   L+  +E  YL Y++S I  RA+PD+RDG KPVHRRII+ M + GL     + KS
Sbjct: 7   NIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD ++YD++VRLAQ F  RYPL+ GQGNFG+IDGD AAA RYTE R
Sbjct: 67  ARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++  HN
Sbjct: 127 MDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +A IDNP I+IE+L++YI  PDFPTGG I    E +  +Y  GRG  R+RA 
Sbjct: 187 LGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNI-MGLEEVKNAYTTGRGKVRLRAE 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G + I+VTEIPYQV KS LI+KIA+L+  K+I  + D+RDES      ++  
Sbjct: 246 ARIEESK-GRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P++++ +++  + M+T F +    L    VP+V+ L  ++  +L H+  V+ RR
Sbjct: 305 TKRDANPNIVLNNLYKYTQMQTTFGIINLALV-NGVPKVLTLKQLIDHYLVHQEIVVRRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVDAILNL 434
           + F +     R+ I++GLL A  NIDEII IIR         ++ RF  +E Q  AIL++
Sbjct: 364 TQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMERFGFSEIQAQAILDM 423

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L+ LE+ ++++E D L A  EK+  +LN+       I  E+ E++  ++       
Sbjct: 424 RLKRLQGLEKEKLQNEFDELSALIEKLTEILNNRHMLLEIIKDELSEIRTKYADDRRTKI 483

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            R                 +       +   +    +        ++A+  K+GD +K  
Sbjct: 484 LRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGMKDGDFIKDM 543

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAFVYD--- 609
               T   +L  +  GK Y+L A  +              LI ++ ++++      D   
Sbjct: 544 FATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADENVTQVLALDKEK 603

Query: 610 -STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGEN 667
            +   ++ ++ KG       S      + G   +K    +++  V  V   + V +V + 
Sbjct: 604 ENDQFIIFITKKGKVKKTSLSLYENIRKTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKK 663

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRSYNRSEND 725
              L F++DQ+ ++SR   GV+  +       +VI F  + +       +   Y +    
Sbjct: 664 GMSLQFNVDQLRDLSRNAIGVKAITLNKDD--EVISFDLVKDNEFLAVISENGYGKKTEL 721

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RGG G    K   ++G    +
Sbjct: 722 SNYTTQNRGGKGIRTYKIAKKTGDVACA 749



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/458 (11%), Positives = 140/458 (30%), Gaps = 20/458 (4%)

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             ++   + +Q    R   +        RI ++E +         I+   +    D    
Sbjct: 346 KQLIDHYLVHQEIVVRRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEK 405

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +   F  S+++ +  L+M +  +  + +    +   +      +      +   +  I +
Sbjct: 406 LMERFGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTEILNNRHMLLEIIK 465

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE- 444
                     A     +I+    + +  + +      +T      I  +   + +     
Sbjct: 466 DELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRG 525

Query: 445 ----YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                 +  +  + + +     +  +            ++  +   +  T  G       
Sbjct: 526 GRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLI 585

Query: 501 EVSRADKATLQ---QAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
           ++   +  T         E +   + I+ +G ++              + A+ F EGD L
Sbjct: 586 QIDADENVTQVLALDKEKENDQFIIFITKKGKVKKTSLSLYENIRKTGIIAIKFDEGDEL 645

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                    + +++++  G +      + L            I LN + ++++  +    
Sbjct: 646 IDVKLVEKNEEVIIVTKKGMSLQFNV-DQLRDLSRNAIGVKAITLNKDDEVISFDLVKDN 704

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGEN 667
             L V+S  G     E S      R GK      +   + +          D + ++ + 
Sbjct: 705 EFLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAKKTGDVACAKALKKDDEILLISKQ 764

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++    + I  +SR   GV L++   G  + V   K
Sbjct: 765 AEVIRIKAEGISTLSRNTSGVLLKNTDKGEDAIVAVAK 802


>gi|118462773|ref|YP_879309.1| DNA gyrase subunit A [Mycobacterium avium 104]
 gi|118164060|gb|ABK64957.1| DNA gyrase, A subunit [Mycobacterium avium 104]
          Length = 839

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/769 (28%), Positives = 379/769 (49%), Gaps = 24/769 (3%)

Query: 6   ISNSNTLV----EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++         + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM
Sbjct: 1   MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+ 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ 
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN+ E+ EA          + E ++  ++E + GPDFPT G ++   +
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSG-LIVGTQ 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  
Sbjct: 240 GIADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAG 299

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + 
Sbjct: 300 ISNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVD-GVPRTLR 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--- 413
           LD +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     
Sbjct: 359 LDQLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIA 418

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q  
Sbjct: 419 RQGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRG 478

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            +  E+ E+ E    +                  A     +   E      +     RS 
Sbjct: 479 IVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQ 538

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQ 591
           K     +     K+ D ++      T D IL  +T G+ Y   A  L        G+ + 
Sbjct: 539 KRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVA 598

Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+     + I        Y+    L++ +  G     + ++  +N   G   + +   +
Sbjct: 599 NLLAFQPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDND 658

Query: 649 KMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFK 704
           ++   V  +  D + +V  N + + FS     +  M R   GV+   +        +   
Sbjct: 659 ELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDYLLSLNV- 717

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 718 VREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 766



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 12/199 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ +  G ++  K    D +        + ++ D L  A+     D +LL+S 
Sbjct: 618 YEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSA 677

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           +G++    A +      G   +    +  N +  +++  V      LLV +S G A    
Sbjct: 678 NGQSIRFSATDEALRPMGRATSGVQGMRFNADDYLLSLNVVREGTYLLVATSGGYAKRTA 737

Query: 628 ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
             E     R GK  L V       ++   + V  D  +  +     ++  +  Q+ +  R
Sbjct: 738 IEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGR 797

Query: 684 -GKGVRLQSYKDGGISDVI 701
             KGVRL +  +G     I
Sbjct: 798 QTKGVRLMNLGEGDTLLAI 816


>gi|68535073|ref|YP_249778.1| DNA gyrase subunit A [Corynebacterium jeikeium K411]
 gi|260579571|ref|ZP_05847442.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734]
 gi|68262672|emb|CAI36160.1| DNA gyrase subunit A [Corynebacterium jeikeium K411]
 gi|258602342|gb|EEW15648.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734]
          Length = 837

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/778 (30%), Positives = 391/778 (50%), Gaps = 39/778 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  DN  N +  + + V  + L+  ++  Y+ YA+S I  RA+P++RDG KPVHRRI++A
Sbjct: 1   MSDDN--NGSDNLFDRVTPIDLQEEMKSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     ++ KSA+ V + +G  HPHGD ++YD+LVRLAQP+  RYPL+ GQGNFG+
Sbjct: 59  MFDNGYRPERSYVKSAKPVADTMGNYHPHGDSAIYDTLVRLAQPWSMRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA RYTE RMT +A  +++ + E+ V+F+  Y+ + +EP V PS+ PNLL NG+
Sbjct: 119 RGNDGAAAMRYTECRMTPLAMEMVRDIRENTVEFQPNYDGKTTEPTVLPSRVPNLLMNGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN+ E+ EA   L+DNP+          +E + GPDFPT G ++   
Sbjct: 179 GGIAVGMATNIPPHNLNELAEAIYWLLDNPDAEEADALEACMERVKGPDFPTAG-LIVGD 237

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I ++YR GRG  R+R    +EE G     I++TE+PYQV    L+  IAE I   +I 
Sbjct: 238 KGIQDTYRTGRGSIRMRGVTSIEEEG-NRQVIIITELPYQVNPDNLVASIAEQIRDGKIA 296

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            +  I DE S      ++    R   P +++ +++  S ++T F  NM  +    VP+ +
Sbjct: 297 GISKIDDESSDRVGMRIVITLKRDAVPRVVLNNLYKHSQLQTSFGSNMLSIVD-GVPRTL 355

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            LD +L+ ++ H+ +V+ RR+ FR+   ++R  IL+GL+ A   +DE+IA+IR       
Sbjct: 356 RLDQMLRHYVDHQIDVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDE 415

Query: 416 VMV---SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                     + E Q D IL ++LR L  +E  +I  EL  L      + ++L S ++Q 
Sbjct: 416 ARTGLIDLLDVDEVQADHILAMQLRRLAAMERQKIIDELAELEETIADLKAILESPQRQR 475

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
           + +  E+ E+ + +        RRT       A     ++ +I +E + V I++ G+ + 
Sbjct: 476 DIVRTELAEIVDKYGDE-----RRTQII---AASGDVSEEDLIARENVVVTITSTGYAKR 527

Query: 533 LKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-- 582
            K  S          +     K+ D ++      T D IL  +  G+ Y L A  L    
Sbjct: 528 TKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNFGRVYRLRAFELPEAT 587

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L++    + I        Y+    L++ ++ G       ++       G 
Sbjct: 588 RTARGQHVANLLEFQPGEQIAQVIQIQSYEDAPYLVLATAHGRVKKSRLTDYDTARSGGL 647

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
             + ++  +++      T  D + +V E  + + F+ D   +  M R   GV+   +++ 
Sbjct: 648 IAINLNEGDRLVGAQLCTAEDDLLLVSEEGQAMRFTADDETLRPMGRATAGVKGMRFREE 707

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +   + E  +   +    Y +           RGG+G +  K   + GK + +
Sbjct: 708 DQLLALTV-VAEDSSLFVATSGGYGKRTPMEEYPTKGRGGLGVVAFKYDKKRGKLIGA 764



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 44/129 (34%), Gaps = 2/129 (1%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F+E D L           + + ++ G     P     +    
Sbjct: 686 DETLRPMGRATAGVKGMRFREEDQLLALTVVAEDSSLFVATSGGYGKRTPMEEYPTKGRG 745

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G  +           ++ A   +   ++L ++S G     E S+I  + R   G   + +
Sbjct: 746 GLGVVAFKYDKKRGKLIGALTVNDDDEILAMTSNGGVIRTEVSQIRHSGRATMGVRLVDL 805

Query: 645 SSEEKMKLV 653
           +   ++  V
Sbjct: 806 AKGNELVAV 814


>gi|302380116|ref|ZP_07268589.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302312058|gb|EFK94066.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 806

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/748 (34%), Positives = 402/748 (53%), Gaps = 15/748 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K   L+  +E  YL Y++S I  RA+PD+RDG KPVHRRII+ M + GL     + KS
Sbjct: 7   NIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD ++YD++VRLAQ F  RYPL+ GQGNFG+IDGD AAA RYTE R
Sbjct: 67  ARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++  HN
Sbjct: 127 MDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +A IDNP I+IE+L++YI  PDFPTGG I    E +  +Y  GRG  R+RA 
Sbjct: 187 LGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNI-MGLEEVKNAYTTGRGKVRLRAE 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G + I+VTEIPYQV KS LI+KIA+L+  K+I  + D+RDES      ++  
Sbjct: 246 ARIEESK-GRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P++++ +++  + M+T F +    L    VP+V+ L  ++  +L H+  V+ RR
Sbjct: 305 TKRDANPNIVLNNLYKYTQMQTTFGIINLALV-NGVPKVLTLKQLIDHYLVHQEIVVRRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVDAILNL 434
           + F +     R+ I++GLL A  NIDEII IIR         ++ RF  +E Q  AIL++
Sbjct: 364 TQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMERFGFSEIQAQAILDM 423

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L+ LE+ ++++E D L A  EK+  +LN+       I  E+ E++  ++       
Sbjct: 424 RLKRLQGLEKEKLQNEFDELSALIEKLTEILNNRHMLLEIIKDELSEIRTKYADDRRTKI 483

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            R                 +       +   +    +        ++A+  K+GD +K  
Sbjct: 484 LRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGMKDGDFIKDM 543

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAFVYD--- 609
               T   +L  +  GK Y+L A  +              LI ++ ++++      D   
Sbjct: 544 FATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADENVTQVLALDKEK 603

Query: 610 -STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGEN 667
            +   ++ ++ KG       S      + G   +K    +++  V  V   + V +V + 
Sbjct: 604 ENDQFIIFITKKGKVKKTSLSLYENIRKTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKK 663

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRSYNRSEND 725
              L F++DQ+ ++SR   GV+  +       +VI F  + +       +   Y +    
Sbjct: 664 GMSLQFNVDQLRDLSRNAIGVKAITLNKDD--EVISFDLVKDNEFLAVISENGYGKKTEL 721

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RGG G    K   ++G    +
Sbjct: 722 SNYTTQNRGGKGIRTYKIAKKTGDVACA 749



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/458 (11%), Positives = 140/458 (30%), Gaps = 20/458 (4%)

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             ++   + +Q    R   +        RI ++E +         I+   +    D    
Sbjct: 346 KQLIDHYLVHQEIVVRRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEK 405

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +   F  S+++ +  L+M +  +  + +    +   +      +      +   +  I +
Sbjct: 406 LMERFGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTEILNNRHMLLEIIK 465

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE- 444
                     A     +I+    + +  + +      +T      I  +   + +     
Sbjct: 466 DELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRG 525

Query: 445 ----YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                 +  +  + + +     +  +            ++  +   +  T  G       
Sbjct: 526 GRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLI 585

Query: 501 EVSRADKATLQ---QAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
           ++   +  T         E +   + I+ +G ++              + A+ F EGD L
Sbjct: 586 QIDADENVTQVLALDKEKENDQFIIFITKKGKVKKTSLSLYENIRKTGIIAIKFDEGDEL 645

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                    + +++++  G +      + L            I LN + ++++  +    
Sbjct: 646 IDVKLVEKNEEVIIVTKKGMSLQFNV-DQLRDLSRNAIGVKAITLNKDDEVISFDLVKDN 704

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGEN 667
             L V+S  G     E S      R GK      +   + +          D + ++ + 
Sbjct: 705 EFLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAKKTGDVACAKALKNEDEILLISKQ 764

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++    + I  +SR   GV L++   G  + V   K
Sbjct: 765 AEVIRIKAEGISTLSRNTSGVLLKNTDKGEDAIVAVAK 802


>gi|227893833|ref|ZP_04011638.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
 gi|227864322|gb|EEJ71743.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
          Length = 826

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/763 (30%), Positives = 389/763 (50%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTGGII+        +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYR-AYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVNEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +     P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVD-GAPHYLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIR+          ++SRF L 
Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AILN+RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILNMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSH 536
            F       +RRT     +    +   + +IEK+ I + +++ G+I+ +           
Sbjct: 480 RFGD-----KRRTEIG--ASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  +  +EGD ++  +++ T D +L  +  GK Y+  A  +       +   +  L+
Sbjct: 533 GKGIKGMGVQEGDFIEHLIYSSTHDTLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNLL 592

Query: 595 DLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T            L  V+  G       SE       G   L +   +++ 
Sbjct: 593 QLEKGEKVQTVINIPEGADDNYLFFVTKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELS 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+   G    ++G +    + F+ + +  M R   GVR  + +      V    +    
Sbjct: 653 NVLTTDGKQNILIGTHLGYAVTFNENDVRAMGRTAAGVRGINLRPHDYV-VGSGVLGSND 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +  +     +  RGG G        ++G    
Sbjct: 712 QVLVISEKGYGKRTSASEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  ++GD L   L       IL+ +  G A T    ++ +
Sbjct: 623 TVKRTHVSEFSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRA 682

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                 A    I+L  +  +V + V  S  ++LV+S KG       SE     R GK   
Sbjct: 683 MGRTA-AGVRGINLRPHDYVVGSGVLGSNDQVLVISEKGYGKRTSASEYPVKGRGGKGIK 741

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     ++V  +   + V+  +  ++ F    + +  R   GVRL    +G  
Sbjct: 742 TANITEKNGPLAGVIVINSSKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVDNGSQ 801

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 802 VASLTIVPTE 811


>gi|297588051|ref|ZP_06946695.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna
           ATCC 53516]
 gi|297574740|gb|EFH93460.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna
           ATCC 53516]
          Length = 806

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/748 (33%), Positives = 399/748 (53%), Gaps = 15/748 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K   L+  +E  YL Y++S I  RA+PD+RDG KPVHRRII+ M + GL     + KS
Sbjct: 7   NIKPADLKKEMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD ++YD++VRLAQ F  RYPL+ GQGNFG+IDGD AAA RYTE R
Sbjct: 67  ARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +++  +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++  HN
Sbjct: 127 MAKLSLEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +A IDNP I+IE+L+++I  PDFPTGG I    E +  +Y  GRG  ++RA 
Sbjct: 187 LGETIDALIASIDNPNITIEELMKHIKAPDFPTGGNI-MGLEEVKNAYTTGRGKVKLRAE 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G + I+VTEIPYQV KS LI+KIA+L+  K++  + D+RDES      ++  
Sbjct: 246 ARIEESK-GRYKIIVTEIPYQVNKSNLIKKIADLVKQKKLEGISDLRDESDRKGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P++++ +++  + M+T F +    L    VP+V+ L  ++  +L H+  V+ RR
Sbjct: 305 TKRDANPNIVLNNLYKYTQMQTTFGIINLALV-NGVPKVLTLKQLIDHYLVHQEIVVRRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVDAILNL 434
           + F +     R+ I++GLL A  NIDEII IIR         ++ RF  +E Q  AIL++
Sbjct: 364 TQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMQRFGFSEIQAQAILDM 423

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L+ LE+ ++++E D L A  E++  +LN+       I  E+ E+K  +S       
Sbjct: 424 RLKRLQGLEKEKLQNEFDELSALIEQLTEILNNRHMLLEIIKDELTEIKTKYSDDRRTKI 483

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            R                 +       +   +    +        ++A+  K+GD +K  
Sbjct: 484 LRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGMKDGDFIKDM 543

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAFVYD--- 609
               T   +L  +  GK Y+L A  +              LI ++ ++ +      D   
Sbjct: 544 FATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADESVTQVLALDKDK 603

Query: 610 -STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGEN 667
                ++ ++  G              + G   +K    +++  V  V   ++V +V + 
Sbjct: 604 EDDQFIIFITKNGKVKKTSLDLYENIRKTGIIAIKFDEGDELIDVKLVEKNENVIIVTKK 663

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRSYNRSEND 725
              L F++DQ+ ++SR   GV+  +       +VI F  + +       +   Y +    
Sbjct: 664 GMSLQFNVDQLRDLSRNAIGVKAITLNKDD--EVISFDLVKDNEFLAVISENGYGKKTEL 721

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RGG G    K   ++G    +
Sbjct: 722 SNYTTQNRGGKGIRTYKIAKKTGDVACA 749



 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 51/458 (11%), Positives = 139/458 (30%), Gaps = 20/458 (4%)

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             ++   + +Q    R   +        RI ++E +         I+   +    D    
Sbjct: 346 KQLIDHYLVHQEIVVRRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEK 405

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +   F  S+++ +  L+M +  +  + +    +   +      +      +   +  I +
Sbjct: 406 LMQRFGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEQLTEILNNRHMLLEIIK 465

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE- 444
                     +     +I+    + +  + +      +T      I  +   + +     
Sbjct: 466 DELTEIKTKYSDDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRG 525

Query: 445 ----YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                 +  +  + + +     +  +            ++  +   +  T  G       
Sbjct: 526 GRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLI 585

Query: 501 EVSRADKATLQ---QAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
           ++   +  T         E +   + I+  G ++              + A+ F EGD L
Sbjct: 586 QIDADESVTQVLALDKDKEDDQFIIFITKNGKVKKTSLDLYENIRKTGIIAIKFDEGDEL 645

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                    + +++++  G +      + L            I LN + ++++  +    
Sbjct: 646 IDVKLVEKNENVIIVTKKGMSLQFNV-DQLRDLSRNAIGVKAITLNKDDEVISFDLVKDN 704

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGEN 667
             L V+S  G     E S      R GK      +   + +          D + ++ + 
Sbjct: 705 EFLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAKKTGDVACAKALKNEDEILLISKK 764

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++    + I  +SR   GV L++   G  + V   K
Sbjct: 765 AEVIRIKAEGISTLSRSTSGVLLKNTDKGEDAIVAVAK 802


>gi|118574922|gb|ABL07038.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/764 (32%), Positives = 412/764 (53%), Gaps = 31/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +  
Sbjct: 2   ENLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA
Sbjct: 62  KSAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  + E       IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  +
Sbjct: 241 RVRIRAKHHI-ETKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKDAMSEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPQILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR+     + K  + +RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLENRFDLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           FS             E+  +      + +I  EP+ V I++ G+++          K   
Sbjct: 479 FSNDRKT--------EIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +        G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D +  L+  +  G       +E       G   + +   +++  
Sbjct: 591 LRPDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVT 650

Query: 653 VVK--VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEG 708
                V   ++ +     + + F +++  +  R  +GVR   +K D            E 
Sbjct: 651 AKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSED 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  + +   +        L  R G G +  K   ++G  + 
Sbjct: 711 QEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIG 754



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/491 (10%), Positives = 137/491 (27%), Gaps = 23/491 (4%)

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + A +  E        I+   + ++                 R  +LE ++       
Sbjct: 332 IILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRRTIFDLEKAKARAHILEGLKIAVDNID 391

Query: 310 RIVLFPKNRSLDPD--LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +V   ++ S D +    +E+ F LS ++++  L+M +  +  + +        +  +  
Sbjct: 392 EVVRIIRSSSNDAEAKESLENRFDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILI 451

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
                  RS  ++  I R          +     EI       D    +      +T   
Sbjct: 452 AELEAILRSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITH 511

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-----EIREV 482
              +  + +++  K +             +       +++       +        ++  
Sbjct: 512 NGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVY 571

Query: 483 KEIFSKSTDLGRRRTTFCEVSRA--DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           K         G+       +         +     ++    V  +  G I+    +    
Sbjct: 572 KIPEGSRIAKGKAVVNLINLRPDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSN 631

Query: 541 SALH-------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL- 592
              +           + +   +    T  I++ ++ G+                  ++  
Sbjct: 632 IRSNGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGI 691

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV--SSEE 648
              ++ +  +    +     ++L VS KG        E     R   G   +K+   +  
Sbjct: 692 KFKIDTDFVVDADVISSEDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGN 751

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            +  V+      + ++    K++   ++ I +  R   GV + +         I     E
Sbjct: 752 VIGEVLVDDTQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKE 811

Query: 708 GLTW-IDSAGR 717
                +D  G 
Sbjct: 812 DEEIELDENGN 822



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 3/121 (2%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               IL +S  G                G  +  +       +++   + D T  L++++
Sbjct: 709 EDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIGEVLVDDTQDLMLLT 768

Query: 619 SKGNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI 675
           S G    V+ + I        G   + V S +K+  + K    D    + EN  ++ ++ 
Sbjct: 769 SIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDENGNVIRYNE 828

Query: 676 D 676
           D
Sbjct: 829 D 829


>gi|311741689|ref|ZP_07715511.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303210|gb|EFQ79291.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 850

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/773 (29%), Positives = 387/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++N  + + +  + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDNNDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   ++DNP+      +E  +E + GPDFPT G ++   + I +
Sbjct: 181 GMATNIPPHNLNELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAG-LIVGDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+P+QV    LI  IAE + + +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVASGKIAGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ +++  S ++T F  NM  +    VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVD-GVPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           L+ ++ H+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR            
Sbjct: 358 LRYYVEHQIEVIVRRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + + Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   +  
Sbjct: 418 KELLDVDDIQADAILAMQLRKLAALERQKIIDELAEIEREIADLKDILAREERQRQIVHD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+ + +        RRT       A      + +I +E + V I++ G+ +  K  S
Sbjct: 478 ELAEIVDKYGDE-----RRTEII---PATGDVTDEDLIARENVVVTITSTGYAKRTKVDS 529

Query: 538 V--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +     K+ D +K      T D IL  +  G+ Y L A  L        G
Sbjct: 530 YKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEGGRAARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + +G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +     V  GD + +  E  + + F+ D   +  M R   GV+   ++       
Sbjct: 650 NEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFRGDDQLLS 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   + +G   + +    Y +           RGG+G +  K  P+ GK + +
Sbjct: 710 MSV-VHDGEFLLVATSGGYGKRTAIEEYTTQGRGGLGVMTFKYTPKRGKLIGA 761



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 52/154 (33%), Gaps = 6/154 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           D ILL S  G+A    A +      G   A    +    +  +++  V      LLV +S
Sbjct: 665 DDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFRGDDQLLSMSVVHDGEFLLVATS 724

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI 675
            G        E     R G   +         K+   + V   D +  +     ++   +
Sbjct: 725 GGYGKRTAIEEYTTQGRGGLGVMTFKYTPKRGKLIGAISVDEDDEIFAITSAGGVIRTEV 784

Query: 676 DQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
           DQI   SR   GVRL +  D      I   + E 
Sbjct: 785 DQIRPSSRATMGVRLVNLGDDVELLAIDRNVEED 818



 Score = 44.0 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 46/136 (33%), Gaps = 3/136 (2%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F+  D L      H  + +L+ ++ G           +    
Sbjct: 683 DDQLRPMGRATAGVKGMRFRGDDQLLSMSVVHDGEFLLVATSGGYGKRTAIEEYTTQGRG 742

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G  +           ++ A   D   ++  ++S G     E  +I  ++R   G   + +
Sbjct: 743 GLGVMTFKYTPKRGKLIGAISVDEDDEIFAITSAGGVIRTEVDQIRPSSRATMGVRLVNL 802

Query: 645 SSEEKMKLV-VKVTGD 659
             + ++  +   V  D
Sbjct: 803 GDDVELLAIDRNVEED 818


>gi|227487629|ref|ZP_03917945.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092447|gb|EEI27759.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 861

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/765 (29%), Positives = 377/765 (49%), Gaps = 23/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ N    + V  + L   ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDENLF--DRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F KS+R V + +G+ HPHGD ++YD+LVRLAQP+  RYP++ GQGNFG+   D 
Sbjct: 59  YRPERGFVKSSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDG 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + ED V+F+  Y+ + +EP V PS+ PNLL NG++GIAV
Sbjct: 119 PAAMRYTECKLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   +++NP+ S ++     +E + GPDFPT   ++   + I +
Sbjct: 179 GMATNIPPHNLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAA-LIVGDQGIKD 237

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  ++R    +EE   G   IV+TE+PY V    L+  IA+ I   ++P    I
Sbjct: 238 AYTTGRGSVKMRGVTSIEEEK-GRTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKI 296

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R   P +++ ++F  S +E+ F +NM  +    VP+ + LD +
Sbjct: 297 DDESSDRVGMRIVVTLKRDAVPRVVLNNLFKHSALESNFGVNMLSIVD-GVPRTLRLDQM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L  +  H+ +V+ RR+ FR+ A ++R  IL+GL+ A   +DE+IA+IR        +  +
Sbjct: 356 LTLYTDHQVDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E Q   IL+++LR L  LE  +I  EL  L      +  +L   ++Q   +  
Sbjct: 416 MELLDVDEEQAQHILDMQLRKLAALERQKIIDELAELEETIADLKDILAKPERQRKIVED 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+RE+ +             T         A     +          +     RS K   
Sbjct: 476 ELREIVDKHGDERRTQLVAATGDVTDEDLIAQENVVVTITSGGYAKRTKVDAYRSQKRGG 535

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
             +     K  D ++      T D IL  +  G+ Y L A  +        G+ +  L++
Sbjct: 536 KGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYEIPEASRTARGQHVANLLE 595

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
               + I        Y+    L++ + KG       ++  ++   G   + ++  + +  
Sbjct: 596 FQPGETIAQVIQIQSYEDEPYLVLATRKGRVKKSRLTDYESSRSAGLIAINLNEGDSLIG 655

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
            V  +G D + +V +  + + FS     +  M R   GV+   +KD      +C    +G
Sbjct: 656 AVLSSGEDDLLLVSQRGQAMRFSAADDVLRPMGRATAGVKGMRFKDDDELLSMCVT-SDG 714

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    Y +           RGG+G    K  P+ GK + +
Sbjct: 715 DYLLVATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQPKRGKLIGA 759



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 91/245 (37%), Gaps = 14/245 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADK--ATLQQAMIEKEPITVVISNRGWIRSLKS 535
            ++  +   +  T  G+      E    +     +Q    E EP  V+ + +G ++  + 
Sbjct: 572 RLKAYEIPEASRTARGQHVANLLEFQPGETIAQVIQIQSYEDEPYLVLATRKGRVKKSRL 631

Query: 536 HSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA-GNLLSGRGHGE 588
                     L A++  EGDSL  A+ +   D +LL+S  G+A    A  ++L   G   
Sbjct: 632 TDYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPMGRAT 691

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS--- 645
           A    +    + ++++  V      LLV +  G        E  A  R G     +    
Sbjct: 692 AGVKGMRFKDDDELLSMCVTSDGDYLLVATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQP 751

Query: 646 SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
              K+   + V  GD +  +     ++   + QI   SR   GVRL +  +G     I  
Sbjct: 752 KRGKLIGALAVNEGDEIMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNLPNGVSLYAIDR 811

Query: 704 KICEG 708
            + + 
Sbjct: 812 NVEDS 816


>gi|163739412|ref|ZP_02146822.1| DNA topoisomerase IV, A subunit [Phaeobacter gallaeciensis BS107]
 gi|163740201|ref|ZP_02147595.1| DNA topoisomerase IV subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161386059|gb|EDQ10434.1| DNA topoisomerase IV subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161387165|gb|EDQ11524.1| DNA topoisomerase IV, A subunit [Phaeobacter gallaeciensis BS107]
          Length = 782

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/781 (49%), Positives = 523/781 (66%), Gaps = 37/781 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           VD+    ++     V    LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AMS
Sbjct: 5   VDDQDTPDSPASGEVLE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMS 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 64  RLRLTSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNID 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT VAE +L+G+ E+AVDFRD Y+   +EP V P+ FPN+LANG +G
Sbjct: 124 GDNPAASRYTEARMTFVAEAMLEGLSENAVDFRDNYDGRLTEPAVLPATFPNILANGAAG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A L LI  P+   + LL Y+ GPDFPTGGIIVE +E+I ++
Sbjct: 184 IAVGMATNIPPHNIGELIDACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKA 243

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG FR+R    VE++GRG W IV+TEIPYQVQKS+LIEKIAELI  K+IP+L D+R
Sbjct: 244 YNTGRGSFRLRCTHEVEDLGRGQWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILADVR 303

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESAED+RIVL PK++++DP++LM  +F  SD+E RF LNMNVL  G  P+V  +  +L+
Sbjct: 304 DESAEDIRIVLEPKSKNVDPEVLMNMMFRNSDLEIRFSLNMNVLIDGVTPKVCSMKEVLR 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            +L HRR+VL RRS  RM  ID R+E+L+G +IA+LN+D +I IIR +D PK  ++    
Sbjct: 364 AFLDHRRDVLQRRSQHRMDKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMRENW 423

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 LTE Q +AILN+RLRSLR+LEE ++  E D L  E+  
Sbjct: 424 SLDHPRAYTEADYVSPAIGAGELTEVQAEAILNMRLRSLRRLEEIELVRERDALREERAG 483

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL S   QW++IA ++++ K+ F K+ + G RRT F E +   +    +AMI++EPI
Sbjct: 484 LVELLASEDLQWSRIAEQLKDTKKQFGKTYEGGPRRTRFAE-AGEVEEVPLEAMIDREPI 542

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+ +++G+ YT+ A NL
Sbjct: 543 TVVCSQMGWIRAMTGHIDLGRELKFKDGDGPRFIFHAETTDRLLVFASNGRFYTISASNL 602

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L++DL +  +IV   +++   +LLV S  GN FI  E +I+A TR GK 
Sbjct: 603 PGGRGMGEPLRLMVDLPNEVEIVDILIHNPEGRLLVASDAGNGFICAEKDIVAQTRSGKQ 662

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------- 693
            L V  +++ K+ ++VTGDHVAVV EN K L+F+++++PE++RGKGVRLQ Y        
Sbjct: 663 VLNVKDDDRAKICIRVTGDHVAVVSENGKFLVFAVEEMPELTRGKGVRLQKYNMARGKQG 722

Query: 694 ----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               DGG+SDV  F   +G++W    G    R E DL  WLGKR G+G   P GFPR+ K
Sbjct: 723 SLELDGGLSDVTTFNWDDGISW--EMGGGKTRHETDLGQWLGKRAGIGKRPPYGFPRNYK 780

Query: 750 F 750
           F
Sbjct: 781 F 781


>gi|317010917|gb|ADU84664.1| DNA gyrase subunit A [Helicobacter pylori SouthAfrica7]
          Length = 830

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/758 (33%), Positives = 405/758 (53%), Gaps = 14/758 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM+E+G
Sbjct: 1   MQDHLVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMNELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE+IIGPDFPTGG I+  +  IVE+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLENPNAELDEVLEFIIGPDFPTGG-IIYGKAGIVEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTKHK-EVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L  +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTAMETTFSI-ILLAIYNKEPKIFTLLELLHLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+  + P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL   E+++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIEELNGILKSEDRLNGVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE FS       + +          A     +       V   +               +
Sbjct: 478 KEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKVYERQNRGGKGKLS 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
               E D ++    A+T D +L ++  G+ Y L    +   +    G+AI  LI L  ++
Sbjct: 538 GSTYEDDFIESFFVANTHDILLFITNKGQLYHLKVYKIPEANRIAMGKAIVNLISLAPDE 597

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       +     L   +  G       SE  +N   G   + +  ++++     V 
Sbjct: 598 KIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSCGIRAIVLDEDDELVSAKIVD 657

Query: 658 GD--HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDS 714
            +  H+ +   +   + F ++ + EM R   GVR     +            +    +  
Sbjct: 658 KNAKHLLIASHSGTFIKFPLENVREMGRSTHGVRGIKLNENDFVVSAVVISDDSNKLLSV 717

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     +           RGG G +  K   ++G  +S
Sbjct: 718 SENGLGKQTLAEAYREQARGGKGVIGMKLNKKTGNLVS 755



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 6/152 (3%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G     P  N+         ++ +    ++  +    + D + KLL VS  G
Sbjct: 662 HLLIASHSGTFIKFPLENVREMGRSTHGVRGIKLNENDFVVSAVVISDDSNKLLSVSENG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSID 676
                         R GK  + +   +K   +  V+ V  +   + ++  + K++  SI 
Sbjct: 722 LGKQTLAEAYREQARGGKGVIGMKLNKKTGNLVSVISVDDENLDLMILTASAKMIRVSIK 781

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            I E  R   GV+L    D  +    C K  E
Sbjct: 782 DIRETGRNASGVKLIDTADKVVYVNSCPKEEE 813


>gi|223040331|ref|ZP_03610607.1| DNA gyrase, A subunit [Campylobacter rectus RM3267]
 gi|222878400|gb|EEF13505.1| DNA gyrase, A subunit [Campylobacter rectus RM3267]
          Length = 874

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/805 (31%), Positives = 404/805 (50%), Gaps = 61/805 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  +     ++++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+ +G
Sbjct: 1   MEENLLNQNQDIQTVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMNNLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +   + + KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDGD 
Sbjct: 61  VGSRSPYMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSIDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT + E IL+ +++D VDF   Y++ ++EP V PS+ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H++ E+ +  L +++N   ++E+++EYI GPDFPTGG I+  ++ I+E+YR 
Sbjct: 181 GMATNIPPHSLDELIDGLLLVLENKNATLEEVMEYIKGPDFPTGG-IIFGKKGIIEAYRT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RA+  + E       IVV E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES
Sbjct: 240 GRGRVKLRAKTHI-EKKPNKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   V+    R    D+++ ++F  + ME+ F + M  ++  + P+V  L  +LK +L
Sbjct: 299 DKDGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAIN-NKEPKVFNLIELLKLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            HR+ V+ RR+ F ++    R  IL+GL IA  NIDE+I +I+N          +V++F 
Sbjct: 358 NHRKTVIIRRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVAKFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL++RL  L  LE  ++++EL  L+AE  ++D +L S       I  E+ E+
Sbjct: 418 LSELQANAILDMRLSKLTGLEREKLEAELAELMAEIARLDEILKSETLLEKLIKDELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K  F                           +       +           K       A
Sbjct: 478 KNKFKVPRITEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKVA 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
           +   + D ++    ++T D ++ ++  G+ Y L    +        G+A+  LI L  ++
Sbjct: 538 VTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLIQLQPDE 597

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +  +  L   +  G       SE       G   + +   +++   + V 
Sbjct: 598 KIKAIIPTTDFAQSKSLAFFTKNGIVKRTNLSEFKNIRSIGVRAISLDENDELVTALIVE 657

Query: 658 GDH------------------------------------------------VAVVGENRK 669
           G+                                                 + +V +   
Sbjct: 658 GEEEPINLIGELGVETEINEIEAIEAQIDEENSNDGDKNGERTESDDSEKMLFIVTKKGM 717

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            L F + ++ +M R  +GV    +K+ G                +  + +   +      
Sbjct: 718 CLKFKLSKVRQMGRTARGVTGIKFKEAGDEVVGAAVIENNAQEVLSVSQKGIGKRTTADE 777

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
             L  RGG G +  K   R+G  + 
Sbjct: 778 YRLTNRGGKGVICMKLTNRTGDLIG 802



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 45/129 (34%), Gaps = 5/129 (3%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSK 620
            + +++  G         +         +  +       ++V  A + ++  ++L VS K
Sbjct: 708 MLFIVTKKGMCLKFKLSKVRQMGRTARGVTGIKFKEAGDEVVGAAVIENNAQEVLSVSQK 767

Query: 621 GNAFIVEESEIIANTRKGK--TFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G        E     R GK    +K+   + + + +V+      +  +  + K++   + 
Sbjct: 768 GIGKRTTADEYRLTNRGGKGVICMKLTNRTGDLIGVVMVDEEQDLMALTSSGKMIRVDMQ 827

Query: 677 QIPEMSRGK 685
            I +  R  
Sbjct: 828 SIRKAGRNT 836


>gi|163793160|ref|ZP_02187136.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199]
 gi|159181806|gb|EDP66318.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199]
          Length = 927

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/848 (28%), Positives = 403/848 (47%), Gaps = 112/848 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ ++    ++  VS+   +   YL YA+S I  RA+PD+RDG KPVHRRI++AM   G
Sbjct: 1   MSDISS-THHDIAPVSIEDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKVGG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   ++KSARIVG+V+G+ HPHGD ++YD++VR+AQ F  R PL+ GQGNFG++DGD 
Sbjct: 60  YDWTRPYRKSARIVGDVMGQYHPHGDSAIYDAMVRMAQDFSMRLPLVDGQGNFGSMDGDP 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ + AE +L+ +D++ VD+   Y+E   EP V P+++PNLL NG  GIAV
Sbjct: 120 PAAMRYTEARLAKAAEGLLRDIDKETVDYIPNYDETTEEPSVLPAEYPNLLVNGAGGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A LA++DNP I+I++L+  + GPDFPTGG ++  R  I E+Y  
Sbjct: 180 GMATNIPPHNLGEVVDACLAMLDNPGITIDELIALVPGPDFPTGG-LILGRSGIREAYHT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +EE+ +  + IVVTEIPYQV KS+L+E+I E++  K +  + D+RDES
Sbjct: 239 GRGSVVMRGRAEIEEIRKDRFAIVVTEIPYQVNKSKLMERIGEVVRDKTVEGISDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R    ++++  ++  + ++T F +NM  L+    P  M L  ++  ++
Sbjct: 299 DRDGVRVVVELKRDAIGEVVLNQLYRYTQLQTSFGVNMLALN-RGRPVQMNLRDVIFAFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------ 419
             R EV+ RR+ F +     R  +L GL++A  N+D +IA+IR+                
Sbjct: 358 EFREEVITRRTRFLLHKARERAHVLAGLMVAINNLDAVIAMIRSAPDAGEARRKLCAAAW 417

Query: 420 -----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L++ Q  AIL+LRL+ L  +E  ++  E  ++ A
Sbjct: 418 PATDVIDFIAIIDDPGHRVTDEGTYQLSDAQARAILDLRLQRLTGMERSKLVDEATDIAA 477

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             +    +L S  +    +  E+ + +E ++       RRT   E          + +I 
Sbjct: 478 RIKDYLDILTSRPRLMGVLRDELLQTREAWAN-----DRRTEIMESEFEHD---IEDLIA 529

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S  G+I+          K      + +  ++ D +     A++   IL  ++
Sbjct: 530 REDMVVTVSYSGYIKRVPLATYRAQKRGGKGRAGMATRDEDWVHRLYVANSHSPILFFTS 589

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G+ Y L    L     +  G  +  L+ L   + I T     +         ++  ++ 
Sbjct: 590 RGQVYQLKTYRLPEGTPQSRGRPMVNLLPLEEGEWIQTVMPMPADESSWDGLHVMFATAA 649

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIP 679
           G       S+     R GK  +K+   +++  V+    GD V +   + K + F +  + 
Sbjct: 650 GTIRRNALSDFTNINRAGKRAMKLDEGDRLIAVMPCNEGDDVLLAARSGKAIRFQVADVR 709

Query: 680 EMSRGK---GVRLQSYKDGGISDVICFKI------------------------------- 705
            + RG+   GVR      G     +                                   
Sbjct: 710 -LFRGRDSLGVRGIRLAKGDEVVSMSILHHVDYESVDGEQNERDVYLRQAAWIRRGSGEG 768

Query: 706 --------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                                     +    + Y +  +     +  RGG G        
Sbjct: 769 DEDASAPDVMLREDRFIALGAAEEFVLSVTEKGYGKRTSAHEYRVTGRGGQGIASMDVTA 828

Query: 746 RSGKFLSS 753
           ++G  +++
Sbjct: 829 KNGPVVTA 836



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVG 665
           +   +L V+ KG        E     R G+      +   +   +        D + +V 
Sbjct: 790 AEEFVLSVTEKGYGKRTSAHEYRVTGRGGQGIASMDVTAKNGPVVTAFPVTPTDQIMLVT 849

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           +  +++   +D I   +R  +GV L    +      +      G  
Sbjct: 850 DGGQIIRCPVDDIRVAARKTQGVVLFRVGEDEKVVSVSLVGENGDD 895


>gi|255348546|ref|ZP_05380553.1| DNA gyrase subunit A [Chlamydia trachomatis 70]
 gi|255503086|ref|ZP_05381476.1| DNA gyrase subunit A [Chlamydia trachomatis 70s]
 gi|255506764|ref|ZP_05382403.1| DNA gyrase subunit A [Chlamydia trachomatis D(s)2923]
 gi|289525227|emb|CBJ14703.1| DNA gyrase subunit A [Chlamydia trachomatis Sweden2]
 gi|296434775|gb|ADH16953.1| DNA gyrase subunit A [Chlamydia trachomatis E/150]
 gi|296438495|gb|ADH20648.1| DNA gyrase subunit A [Chlamydia trachomatis E/11023]
          Length = 836

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 380/762 (49%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+TQ A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTQSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EAAL ++ N + SIE +LE + GPDFPTGG I+   E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEAALLVLANSQTSIEDILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDK-NLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR     +            +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRT       A      + +I  E + + IS   +++ +            +   
Sbjct: 483 -----RRTRIE--MDAGDVRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVT 535

Query: 550 SLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--- 597
              +            A T D +L+ +  G+ Y L    L  G    +   ++  L    
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        ++    L + + KG    V      +  +KG   L++   +++    
Sbjct: 596 PGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAAR 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  D++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RG VG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGA 757



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 53/154 (34%), Gaps = 5/154 (3%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
               A+  ++++L +  G A   P   +         ++ +   N    +V+  V     
Sbjct: 654 ARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G        +     R         +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGAISVTDCDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
           + +  ++  +  M R  +GVRL + ++G     +
Sbjct: 774 QAIRINMQDVRVMGRATQGVRLVNLREGDTLVAM 807


>gi|208434615|ref|YP_002266281.1| DNA gyrase subunit A [Helicobacter pylori G27]
 gi|208432544|gb|ACI27415.1| DNA gyrase subunit A [Helicobacter pylori G27]
          Length = 833

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/764 (32%), Positives = 406/764 (53%), Gaps = 15/764 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +++ +++    +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++A
Sbjct: 1   MQDNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+
Sbjct: 61  MHELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG 
Sbjct: 121 IDGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMATSIP H + EI +A   +++NP  +++++LE++ GPDFPTGG I+  +  IV
Sbjct: 181 NGIAVGMATSIPPHRIDEIIDALAHVLENPNAALDEILEFVKGPDFPTGG-IIYGKAGIV 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y+ GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + +
Sbjct: 240 EAYKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISE 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +
Sbjct: 299 VRDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLEL 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L+ +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  +
Sbjct: 358 LRLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNAL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  
Sbjct: 418 MERFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKT 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ EVKE FS       + +          A     +       V   +           
Sbjct: 478 ELLEVKEQFSSPRHTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGG 537

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               +    E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI 
Sbjct: 538 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLIS 597

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMK 651
           L  ++ I+       +     L   +  G       SE  +N    G   + +   +++ 
Sbjct: 598 LAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELV 657

Query: 652 LVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
               V  +  H+ +       + F ++ + E+ R  +GV+     +            +G
Sbjct: 658 SAKVVDKNVKHLLIASHLGIFIKFPLEDVREIGRTTRGVKGIRLAENDFVVGAVVISDDG 717

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  +     +           RGG G +  +   ++G  +S
Sbjct: 718 NKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMRLTQKTGNLVS 761



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 6/162 (3%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G     P  ++         ++ +    ++  +    + D   KLL VS  G
Sbjct: 668 HLLIASHLGIFIKFPLEDVREIGRTTRGVKGIRLAENDFVVGAVVISDDGNKLLSVSENG 727

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSID 676
                        +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI 
Sbjct: 728 LGKQTLAEAYREQSRGGKGIIGMRLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIK 787

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            I E  R   GV+L +  D  +    C K  E      S+ +
Sbjct: 788 DIRETGRNASGVKLINTADKVVYVNSCPKEEEPENLETSSAQ 829


>gi|254166731|ref|ZP_04873585.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|289596496|ref|YP_003483192.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|197624341|gb|EDY36902.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|289534283|gb|ADD08630.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
          Length = 788

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/749 (32%), Positives = 408/749 (54%), Gaps = 30/749 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++  ++   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++ M E+GL     +KKS
Sbjct: 2   KIQERAIDEEMKDSYMDYAMSVIVSRALPDVRDGLKPVHRRILYGMYELGLYHNKPYKKS 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGDQ++Y++L R+AQ F  RY L+ GQGNFG+IDGDS AA RYTEAR
Sbjct: 62  ARIVGEVMGKYHPHGDQAIYNTLARMAQDFSMRYLLVDGQGNFGSIDGDSPAAMRYTEAR 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++AE +L+ +D + VDF   ++    EPVV P++ PNLL NG+SGIAVGMAT++P HN
Sbjct: 122 LAKIAEEMLKDIDMETVDFMPNFDGTLKEPVVLPARIPNLLINGSSGIAVGMATNMPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A + LID+P+  +++LLE++ GPDFPTGG I+   E +V++YR G+G  +VRA+
Sbjct: 182 LSEIVDALIYLIDHPDADVDELLEFVKGPDFPTGGTII-GYEGLVDAYRTGKGKIKVRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           + V+E       I++ EIPY+V KS L++KIA L+   ++  + D++DES  +   ++  
Sbjct: 241 YEVKED-----RIIIKEIPYEVNKSTLLKKIASLVREDKLRGISDLKDESDREGIRIVIK 295

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R ++P++++  +   +D+E  + +   VL    VP+++ L  ++KE++ HR EVL R+
Sbjct: 296 VKRDMNPEIVVNQLLEHTDLEVTYGIINLVLVD-GVPRILNLKELMKEYIRHRMEVLVRK 354

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--RFSLTENQVDAILN 433
            +++++    R  I++GL+ A   IDE+IA I+     K   ++      +E Q  AIL+
Sbjct: 355 LNYQLRKAKERKHIVEGLVKALGMIDEVIATIKASKDVKEATINLVSLGFSEVQAKAILD 414

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  +E   +  E   L  + + ++SLL S ++++  I  E+ E+K ++       
Sbjct: 415 MRLQKLTSMEIDALIEENRKLEEDIKNMESLLASEEKRYGVIKEELFEIKNLYGD----- 469

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALHFK 546
           +RRT       A +    + +I  E   ++++ +G+IR LK               +++ 
Sbjct: 470 KRRTDI--YKGAVERRDIEDLIPNEEAVIILTEKGYIRRLKVDEYRAQGRGGKGVMINYG 527

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH-NQDIVTA 605
           EGD  +    A+  D ++  + +G+ Y L A  +  G        ++  +     D++  
Sbjct: 528 EGDLPRDITTANLHDYLMFFTKNGRVYWLKAYEVPEGTRRSRGRAIINIIPKLGSDVIRM 587

Query: 606 FVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAV 663
              +  +  L  ++  G        E       G   +    ++++  V     G+ + +
Sbjct: 588 LSLNDFSGYLFFITRNGIVKRTSLEEFSNPRSTGIRAIIFDEDDELVDVKITHGGEDIFL 647

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
             +  K + FS D +  M R  +GV     +DG    +      EG          Y + 
Sbjct: 648 FTKYGKAIRFSEDDVRVMGRTARGVIGIKLQDGDEV-ISSAVESEGPYVFAVLSSGYGKR 706

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                    +RGG+G        R+   +
Sbjct: 707 TPIGEYRRIRRGGMGVRNISI--RNANVV 733



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 68/230 (29%), Gaps = 9/230 (3%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI-----SNRGWIRS 532
            ++  +         GR          +D   +         +  +              
Sbjct: 555 WLKAYEVPEGTRRSRGRAIINIIPKLGSDVIRMLSLNDFSGYLFFITRNGIVKRTSLEEF 614

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
               S  + A+ F E D L      H  + I L +  GKA      ++         +  
Sbjct: 615 SNPRSTGIRAIIFDEDDELVDVKITHGGEDIFLFTKYGKAIRFSEDDVRVMGRTARGVIG 674

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKM 650
            I L    +++++ V      +  V S G        E     R G     + + +   +
Sbjct: 675 -IKLQDGDEVISSAVESEGPYVFAVLSSGYGKRTPIGEYRRIRRGGMGVRNISIRNANVV 733

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           K ++    D   ++ +N   +   +  +  M R  +GV+L    DG    
Sbjct: 734 KSLLTTENDEALLLTKNGMSIRIKLRDVSVMGRNARGVKLIKLDDGDEVV 783



 Score = 44.4 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 61/180 (33%), Gaps = 10/180 (5%)

Query: 484 EIFSKSTDLGRRRTTFCEVSR-----ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           E FS     G R   F E                 +  K    +  S        ++ + 
Sbjct: 612 EEFSNPRSTGIRAIIFDEDDELVDVKITHGGEDIFLFTKYGKAIRFSEDDVRVMGRT-AR 670

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            +  +  ++GD +  +        +  + + G     P G     R  G  ++ +     
Sbjct: 671 GVIGIKLQDGDEVISSAVESEGPYVFAVLSSGYGKRTPIGEYRRIRRGGMGVRNISI--R 728

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLVVKV 656
           N ++V + +     + L+++  G +  ++  ++       +G   +K+   +++  V K+
Sbjct: 729 NANVVKSLLTTENDEALLLTKNGMSIRIKLRDVSVMGRNARGVKLIKLDDGDEVVNVAKL 788


>gi|224437379|ref|ZP_03658351.1| DNA gyrase subunit A [Helicobacter cinaedi CCUG 18818]
 gi|313143843|ref|ZP_07806036.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
 gi|313128874|gb|EFR46491.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
          Length = 824

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/763 (34%), Positives = 417/763 (54%), Gaps = 31/763 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           ++L+E+    V +  +++E YL Y++S I  RA+PD +DG KPVHRRI++AM+E+ L   
Sbjct: 2   DSLLEDKSVEVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELSLSPR 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD AAA 
Sbjct: 62  RPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT  +E +L+ +D+D V+F   Y+   SEP V PS+ PNLL NG+SGIAVGMAT
Sbjct: 122 RYTEARMTSASEEMLRDIDKDTVEFVPNYDNTLSEPDVLPSRIPNLLVNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIP H + EI +A + +IDN   +++ +LE + GPDFPTGG I+  +  I+E+YR GRG 
Sbjct: 182 SIPPHRIDEIIDALIFVIDNNTQNVDDVLELVQGPDFPTGG-IIYGKMGILEAYRTGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA+  +E+       IV+ E+PYQV K++L+E+I+EL   K I  + ++RDES  + 
Sbjct: 241 IRVRAKVHIEKTKTK-DVIVIDEVPYQVNKAKLVEQISELAKEKIIEGIAEVRDESDREG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    ++++  +F  + ME+ F + +  ++  + P++  L  +L+ ++AHR+
Sbjct: 300 IRVVIELKRDAMSEIVLNHLFKSTTMESTFGIILLAIN-NKEPKIFNLLELLQIFIAHRK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTEN 426
            ++ RRS F ++    R  IL+GL+IA  NIDEII IIR     +        +FSL+E 
Sbjct: 359 TIIIRRSIFELEKAKARAHILEGLIIALDNIDEIIRIIRASKDTEEAKNALVEKFSLSEL 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RL+ L  LE  +I +E   L  +   ++S+L S ++  + +  E+ E+KE F
Sbjct: 419 QAKAILEMRLQRLTGLERDKINAEYAELQEQIAYLESILKSEEKLKSIVKDELLEIKEKF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           S      +R+T   E   +      + +I  E + V +S+RG+++               
Sbjct: 479 S-----SKRKTQIEEDYDS---IDIEDLIPNEKVVVTMSHRGYVKRVLLKTYEKQNRGGK 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
              + +  E D ++    A+T D I+ ++  G+ Y L    +        G+A+  LI+L
Sbjct: 531 GKVSGNTHEDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAVVNLINL 590

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           + ++ I+       ++    L+  +  G        E       G   + +   +++   
Sbjct: 591 SPDEKIMATITTTDFNDDKSLVFFTKNGIVKRTNLKEYSNIRSVGVRAINLDENDELVTA 650

Query: 654 VKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGL 709
             V      + +  +    + F ID++ E+ R G+GV    +K              +  
Sbjct: 651 HIVGSSVKELFIATQQGMCIRFGIDELREIGRVGRGVTGIKFKASEDCVIAATTITSDTD 710

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + +   +        L  R G G +V K  P++GK +S
Sbjct: 711 KLLTVSEQGIGKQTLAGEYRLQSRAGKGVIVMKLTPKTGKLVS 753



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 8/184 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++            SV + A++  E D L  A    ++ + L ++T          + L 
Sbjct: 619 IVKRTNLKEYSNIRSVGVRAINLDENDELVTAHIVGSSVKELFIATQQGMCIRFGIDELR 678

Query: 583 GRGHGEAIQLLIDLNHNQD--IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK- 639
             G        I    ++D  I    +   T KLL VS +G        E    +R GK 
Sbjct: 679 EIGRVGRGVTGIKFKASEDCVIAATTITSDTDKLLTVSEQGIGKQTLAGEYRLQSRAGKG 738

Query: 640 -TFLKV-SSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
              +K+     K+  VV +  +   + V+  + K++    + I E  R   GV++ +  +
Sbjct: 739 VIVMKLTPKTGKLVSVVNINDENMDLMVLTSSGKMIRVDTEAIREAGRNTSGVKIVNVGN 798

Query: 695 GGIS 698
             ++
Sbjct: 799 DKVA 802


>gi|57168897|ref|ZP_00368027.1| DNA gyrase, A subunit [Campylobacter coli RM2228]
 gi|305431952|ref|ZP_07401119.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli
           JV20]
 gi|57019733|gb|EAL56419.1| DNA gyrase, A subunit [Campylobacter coli RM2228]
 gi|304445036|gb|EFM37682.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli
           JV20]
          Length = 855

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/780 (32%), Positives = 406/780 (52%), Gaps = 44/780 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+K
Sbjct: 8   DSDIELIDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD AAA RYTE
Sbjct: 68  KSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 ARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ + S+E L+++I GPDFPTGG I+  ++ I+E+YR GRG  ++R
Sbjct: 188 HSLNELVDGLLYLLDHKDASLEDLMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKIR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  +   V+
Sbjct: 247 AKTHI-EKKSNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLIELLNLFLNHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F LTE Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  ++D +L S     N I  E++E+K  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L  ++ I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH----- 660
             +D    L   +  G       SE       G   + +   +++   + V  D      
Sbjct: 605 TDFDENKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTAIIVQRDENEETG 664

Query: 661 --------------------------VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
                                     +  V +    + F + ++ E+ R  +GV    +K
Sbjct: 665 LLDDDSLNDENTNSDENLIESIKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFK 724

Query: 694 DGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     V    I  +    +  + +   +  N     L  RGG G +  K   ++ + +S
Sbjct: 725 EKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTDKTKELIS 784


>gi|62185122|ref|YP_219907.1| DNA gyrase subunit A [Chlamydophila abortus S26/3]
 gi|62148189|emb|CAH63946.1| DNA gyrase subunit A [Chlamydophila abortus S26/3]
          Length = 830

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/762 (32%), Positives = 391/762 (51%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++  P++SIE++LE + GPDFPTGG ++   E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGG-LICGSEGIRSTYYTGRGKIKVR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IA+L+  K +  + D+RDES +D   V
Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR EV+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDIQVTFGANMLALDK-NLPRTMNIHRMISVWVRHRTEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +D+++  IRN +  +        +F  TE+Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSESKEHAKHQLIEKFGFTEHQSI 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +I+ E D L+ +      +L       + I  E++E++++    
Sbjct: 423 AILELRLYQLTGLEAEKIQKEYDELVNKIAYYKRVLADEGLVKDIIRNELQELQKLHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRTT      AD     + +I  EP+ + IS   +++ +                
Sbjct: 483 -----RRTTIE--FDADDIRDIEDIITNEPVIITISGDDYVKRMPIKVFREQKRGGHGVS 535

Query: 550 SLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--- 597
              +            A T D +L+ +  G+ Y L    L  G    +   ++  L    
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +++   L + +  G    V         +KG   L++   +++   V
Sbjct: 596 PGEQLAAVLNIKNFENAGFLFLATKHGVVKKVALDAFSNPRKKGIRALEIDDGDELIAAV 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +T +   V +       + F  D++  M R  +GVR  S K+     V C  + +  + 
Sbjct: 656 HITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVVACQIVRDDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RGGVG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERNGDVLGA 757



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 56/168 (33%), Gaps = 6/168 (3%)

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 ++++L +  G A   P   +         ++ +   N    +V   +      +
Sbjct: 656 HITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVVACQIVRDDQSV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           LVV   G     +  +     R G       +   + + +  +     D + ++    + 
Sbjct: 716 LVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERNGDVLGAISVTDHDSILLMSAQGQA 775

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAG 716
           +  ++  +  M R  +GVRL   K+G  +  +    + E  T  +   
Sbjct: 776 IRINMQDVRVMGRSTQGVRLVHVKEGDTLVAMEKLSLNEDETLTNIEE 823


>gi|255323998|ref|ZP_05365123.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141]
 gi|255298855|gb|EET78147.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141]
          Length = 850

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/773 (29%), Positives = 387/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++N  + + +  + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDNNDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   ++DNP+      +E  +E + GPDFPT G ++   + I +
Sbjct: 181 GMATNIPPHNLNELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAG-LIVGDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+P+QV    LI  IAE + + +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVASGKIAGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ +++  S ++T F  NM  +    VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVD-GVPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           L+ ++ H+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR            
Sbjct: 358 LRYYVEHQIEVIVRRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + + Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   +  
Sbjct: 418 KELLDVDDIQADAILAMQLRKLAALERQKIIDELAEIEREIADLKDILAREERQRQIVHD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+ + +        RRT       A      + +I +E + V I++ G+ +  K  S
Sbjct: 478 ELAEIVDKYGDE-----RRTEII---PATGDVTDEDLIARENVVVTITSTGYAKRTKVDS 529

Query: 538 V--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +     K+ D +K      T D IL  +  G+ Y L A  L        G
Sbjct: 530 YKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEGGRAARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + +G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +     V  GD + +  E  + + F+ D   +  M R   GV+   ++       
Sbjct: 650 NEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFRGDDQLLS 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   + +G   + +    Y +           RGG+G +  K  P+ GK + +
Sbjct: 710 MSV-VHDGEFLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGA 761



 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 52/154 (33%), Gaps = 6/154 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           D ILL S  G+A    A +      G   A    +    +  +++  V      LLV +S
Sbjct: 665 DDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFRGDDQLLSMSVVHDGEFLLVATS 724

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI 675
            G        E     R G   +         K+   + V   D +  +     ++   +
Sbjct: 725 GGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGAISVDEDDEIFAITSAGGVIRTEV 784

Query: 676 DQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
           DQI   SR   GVRL +  D      I   + E 
Sbjct: 785 DQIRPSSRATMGVRLVNLADDVELLAIDRNVEED 818


>gi|222479424|ref|YP_002565661.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239]
 gi|222452326|gb|ACM56591.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239]
          Length = 827

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/772 (31%), Positives = 401/772 (51%), Gaps = 34/772 (4%)

Query: 1   MGVDNI-SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  D   ++ + +    V    +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++
Sbjct: 1   MSSDVPDADPSDVGAAQVTNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM E G+   +A +KS+ +VGE +G  HPHGD ++YD+L R+AQ F  RYPL+ GQGNFG
Sbjct: 61  AMHEAGVTSNSAHRKSSSVVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD  AA RYTEARM+ +AE +L  ++ D VDF   Y++   EP V P+ FPNLL NG
Sbjct: 121 SVDGDPPAAMRYTEARMSPIAEELLADIERDTVDFTSNYDDRLEEPEVLPAAFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGM+T+IP HN+ E+ +A +ALI  P+ ++E L+E++ GPDFPTG  IV  R ++
Sbjct: 181 SSGIAVGMSTNIPPHNLGEVIDATVALIKEPDCTVEDLMEHVKGPDFPTGANIV-GRNAV 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y+ GRG  RVRA + V+E       IV++E+P+Q  KSRL+E+IAE +    I  + 
Sbjct: 240 HKAYKTGRGRVRVRAEFEVDEEE---GRIVISELPFQQNKSRLVERIAEDVNDGSIEGIR 296

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  D   V+    R    +++  +  + S +E  F +    L     PQV+ L  
Sbjct: 297 DLRDESDRDGIRVVVELKRDAMAEVVK-NQLLESHLERTFGVINLALVD-GSPQVLDLKQ 354

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-- 417
            L+ ++ HRR+V+ RRS   +   + R  ILKG L A   +D+++  I+N D        
Sbjct: 355 TLEYYVEHRRDVVRRRSEHELAEREDRAHILKGRLKALEQVDDVVETIQNSDDRDAAKAA 414

Query: 418 -VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
             + +  +E Q + I+ ++L SL  +E  +I+SE +++ A  E+++++L    +    I 
Sbjct: 415 LEADYEFSEAQAEHIVRMQLGSLTSMETQEIESEYEDVTARIERLETILGDPDELDQVII 474

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--- 533
            E+RE+K+ +        RRT+F E          + +I +E   VV+S   +I+ +   
Sbjct: 475 TELREIKDEYDDE-----RRTSFIE---DVGDVTHEDLIPEEECVVVMSEDDYIKRMSLD 526

Query: 534 -----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--H 586
                      +     KEGD +     A++ D +L+ +  G+ Y L    +        
Sbjct: 527 TFRAQNRGGKGIIGTDLKEGDRVSSVFAANSHDYLLVFTNHGQIYELKTYEIPEMSRTAR 586

Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G++   LIDL+  ++I         D    L +V+  G        +       G   ++
Sbjct: 587 GKSAVNLIDLDDGEEIEAVVNTDDLDDDEFLTMVTRDGYIKRTAVDQFGNIRSTGIRAIR 646

Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDV 700
           +   +++  V     G  + +   N   + F+  +   M R  +GV     ++G  ++ V
Sbjct: 647 LEDGDELVDVEVTNGGTDIVIGSRNGMAIRFAESEARAMGRTARGVIGIDLREGDAVAGV 706

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                      +      Y +  +     L  R G G +  K   R+G+ ++
Sbjct: 707 AAIDEDRHNWVLTVTENGYGKRSDLDEYRLQSRNGKGLIDIKTGDRNGEAVA 758



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--- 648
           IDL     +      D      +L V+  G     +  E    +R GK  + + + +   
Sbjct: 695 IDLREGDAVAGVAAIDEDRHNWVLTVTENGYGKRSDLDEYRLQSRNGKGLIDIKTGDRNG 754

Query: 649 KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +   +  VT GDH+  + +N +++   +++I  + R  KGV + +         +     
Sbjct: 755 EAVAIEAVTYGDHLLAMSDNGQIMRTRVEEISTVGRNTKGVIVMNLDPDDTVASVDIVSE 814


>gi|320159763|ref|YP_004172987.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
 gi|319993616|dbj|BAJ62387.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
          Length = 814

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/761 (34%), Positives = 401/761 (52%), Gaps = 34/761 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +++V +   +   YL YA+S I  RA+PD RDG KPVHRRI++AM +MG+   +A+KKSA
Sbjct: 6   IQSVDIDEQMRTAYLDYAMSVIVARALPDARDGLKPVHRRILYAMEDMGIRANSAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEV+GK HPHGD +VYD++ R+AQ F  RYPLI GQGNFG+IDGD+ AA RYTEAR+
Sbjct: 66  RIVGEVLGKYHPHGDMAVYDAMARMAQDFSMRYPLIDGQGNFGSIDGDAPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +AE +L  +D+D VDF D ++    EPVV P++ PNLL NG+SGIAVGMATSIP HN+
Sbjct: 126 NPMAEELLADIDKDTVDFTDNFDGTLKEPVVLPARLPNLLLNGSSGIAVGMATSIPPHNL 185

Query: 197 QEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ +A   LI+N +   +     L+  I GPDFPTGGIIV  RE I+  Y  GR    V
Sbjct: 186 REVAQAVDYLIENYDQMDDITAEDLMRIIPGPDFPTGGIIV-GREGILHGYSTGRSRLTV 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R    +EE   G + I++TEIPYQV K+ LIE+IAEL+   ++  + D+RDES      +
Sbjct: 245 RGVARIEEQKGGRYNIIITEIPYQVNKAGLIERIAELVREGKLDEISDLRDESDRHGMSI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P  ++  ++  + +++ F +NM  L     P+++PL   L+ ++ HR+EVL
Sbjct: 305 VIELRRGAQPRQVLNQLYKYTPLQSTFSVNMLALVD-NEPRLLPLKRALQVFIQHRQEVL 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ F +     R  IL+GLLIA  N+D +IAIIR     +        RF LTE Q  
Sbjct: 364 TRRTRFELDKARARAHILEGLLIALANLDAVIAIIRQSPDAETARQRLIERFKLTEVQAQ 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++LR L  LE  +I+ E   +      ++ LL + ++    I  +++E+ E +   
Sbjct: 424 AILDMQLRRLAALERQKIEDEYREVTERIAYLEDLLANPRKILALIQTDMKELAEKYGD- 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT     + A +   ++ ++  E + + ++ RG+I+                + 
Sbjct: 483 ----NRRTRIA--AEAKEDFSEEDLVADEAVLITLTARGYIKRVNASAYRTQNRGGKGVI 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
               KE D +   L A T D +L  +  GK Y   A  +       +      ++ L  N
Sbjct: 537 GQEVKEEDEITTILAARTLDTLLFFTDRGKVYAQKAHQIPEAGRTDKGIPAINVLALEAN 596

Query: 600 QDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I   V    +      L+ +  G    V+ SE  +    G   + + + +++  V   
Sbjct: 597 ERITVAVAVRSFADARYCLMATVNGKVKRVDLSEFESVRPSGLIAISLENGDQLGWVRLT 656

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            G  HV +V E    + F+  ++  M R   GV   S ++G     +   + EG   +  
Sbjct: 657 DGSRHVLLVTEQGYTVRFAESEVRSMGRQASGVTGISLREGDRVASMDI-VEEGGGLLLV 715

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLV--PKGFPRSGKFLSS 753
             + + +        L  R   G +    K   ++GK   +
Sbjct: 716 TTKGFGKRVRLDEFVLKGRAIGGVMALDHKAIAKTGKLAVA 756



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 59/199 (29%), Gaps = 17/199 (8%)

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
               + K   VDLS         L      +      +  TDG  + L            
Sbjct: 616 MATVNGKVKRVDLSEFESVRPSGLIAISLENGDQLGWVRLTDGSRHVLLVTEQGYTVRFA 675

Query: 588 EAIQ----------LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
           E+              I L     + +  + +    LL+V++KG    V   E +   R 
Sbjct: 676 ESEVRSMGRQASGVTGISLREGDRVASMDIVEEGGGLLLVTTKGFGKRVRLDEFVLKGRA 735

Query: 638 GKTFLKVSSEE-----KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
               + +  +      K+ +   V   D VA+   +   L   +  IP   R  +GV + 
Sbjct: 736 IGGVMALDHKAIAKTGKLAVARVVQENDEVALFSASGVALRVKVSSIPFKGRVAQGVSIM 795

Query: 691 SYKDGGISDVICFKICEGL 709
              +G     I     E  
Sbjct: 796 HLDEGDSVASIARIPQEEA 814


>gi|15616799|ref|NP_240011.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11132931|sp|P57277|GYRA_BUCAI RecName: Full=DNA gyrase subunit A
 gi|25292843|pir||A84951 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A
           [imported] - Buchnera sp. (strain APS)
 gi|10038862|dbj|BAB12897.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/777 (31%), Positives = 400/777 (51%), Gaps = 45/777 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 +  V++   L+  YL Y++S I  RA+PD+RDG KPVHRRI+ AM  +  D+  
Sbjct: 2   KDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  +L  ++++ V+F   Y+  +  P + P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LA IDN +I++E+L+++I GPDFPT   I+  +  I E+YR G+G  
Sbjct: 182 IPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAA-IINGKSGIEEAYRTGKGKI 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  + +        IV  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D 
Sbjct: 241 YIRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++  ++ L+ ++  F +NM  L     P+ + L  ILK +L+HR+
Sbjct: 301 MRIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALC-QGQPKTLSLKEILKNFLSHRQ 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLI-----------------AYLNIDEIIAIIRNEDK 412
           E++ RRS F +  +  R+ IL+GL +                 +      II      +K
Sbjct: 360 EIIIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEK 419

Query: 413 PKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                    +  +E Q  AIL+LRL  +  LE+ +I  E ++L+ + +++  +L + K+ 
Sbjct: 420 INYLAKKHEYYFSEKQAQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKM 479

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-- 529
           +  I  E+  ++  FS      +RRT   E          + +I +E + V +S+ G+  
Sbjct: 480 FEVIKSELLSIQNNFSD-----KRRTKITENHSD---INMEDLINQEDVVVTLSHSGYVK 531

Query: 530 ------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS- 582
                   + +      SA   KE D ++  + A+T D IL  S+ G  Y +    L   
Sbjct: 532 YQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPES 591

Query: 583 -GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                G  I  L+ L+  + I        Y     + + ++ G       S+       G
Sbjct: 592 SRHARGRPIVNLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAG 651

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              + + + +++  V    G +++ +  +N K++ F  + +  M R   GV+    K   
Sbjct: 652 IIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKGIKIKKND 711

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +     +G + + +    Y +        +  R   G +  K   ++GK + +
Sbjct: 712 KVVSLIVPKNKG-SILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGA 767


>gi|313885860|ref|ZP_07819601.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I]
 gi|332300696|ref|YP_004442617.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica DSM 20707]
 gi|312924689|gb|EFR35457.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177759|gb|AEE13449.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica DSM 20707]
          Length = 860

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/758 (29%), Positives = 393/758 (51%), Gaps = 24/758 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++++M+E G  +    +K
Sbjct: 6   DRIIPVDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNNPTRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR VG+++GK HPHGD SVY++LVRLAQ +  RYPL+ GQGNFG+IDGDS AA RYTE+
Sbjct: 66  CARAVGDILGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ Q A+ +L+ +D + VDF+D ++ +  EP V P + PNLL NG +GIAVGMAT++  H
Sbjct: 126 RLNQFAQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATNMAPH 185

Query: 195 NVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           N+ E   A +A ID   EI++++L++Y+  PDFPTGG ++   E + E++R GRG   +R
Sbjct: 186 NLTETLNACIAYIDARGEITVDELMQYVKAPDFPTGG-VIYGYEGVKEAFRTGRGRIVIR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +EE   G   IV+ EIPYQV+KS ++ KIA+L+  K+I  + DI DES+     ++
Sbjct: 245 GKADIEEY-HGHERIVIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGIRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  +  +++  ++  SD+E+ F +N   L     P+++ L  ++  ++ HR +V+ 
Sbjct: 304 IDIKKDANAGVVLNYLYKYSDLESYFSVNNIALVH-GRPRLLNLKDLIGHFVDHRHDVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDA 430
           RR+ + ++    R+ IL+GL+IA  +IDE+I IIR+ ++ +  M        L+E Q  A
Sbjct: 363 RRAQYELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLMEAFNLSELQARA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RLR L KL+  +++ E + L    + ++  L+    +   I  E RE+ + +    
Sbjct: 423 IVDMRLRQLTKLDIDKLQHEYNELKERIDYLNLFLSDINMRMELIQEECREIIDKYGDER 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                  +         A     +       +  +     R+     V +     ++ D 
Sbjct: 483 RSEIVYASEDLNPEDFYADEDMVITISHLGYIKRTPLSEFRTQTRGGVGVKGADSRDEDF 542

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-VTAFV-- 607
           ++    A     ++L +  G+ Y L    +  G    +   +   L+ +++  VTAF+  
Sbjct: 543 VEYIYSATMHATMMLFTATGRVYWLRVFEIPEGSKSSKGRHIQNLLDLDEENRVTAFLRI 602

Query: 608 --------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   + +T  L+  + +G       +      + G   + +  ++++  V    G+
Sbjct: 603 KDLTTDKEFVNTHYLVFATEQGLIKKTLLAHYANPRKTGVRAINLRGDDQVVSVALSNGN 662

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI----CEGLTWID 713
             + +   N + + F+  ++  M R   GVR     D     V+   +        T + 
Sbjct: 663 CEIFLANRNGRCVRFNEQEVRPMGRTATGVRGIRLDDDPNDKVVGMVVHRLKNSDETILV 722

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +        + KRG  G        ++G+ +
Sbjct: 723 ISEKGYGKRSLIDDYRITKRGAKGVKTINVTDKTGQLI 760


>gi|255322135|ref|ZP_05363282.1| DNA gyrase, A subunit [Campylobacter showae RM3277]
 gi|255300833|gb|EET80103.1| DNA gyrase, A subunit [Campylobacter showae RM3277]
          Length = 872

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/797 (31%), Positives = 403/797 (50%), Gaps = 60/797 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             ++++AV +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+ +G+   + +
Sbjct: 7   NNQDIQAVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMNNLGVGSRSPY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDGD AAA RYT
Sbjct: 67  MKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSIDGDGAAAMRYT 126

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARMT + E IL+ +++D VDF   Y++ ++EP V PS+ PNLL NG+SGIAVGMAT+IP
Sbjct: 127 EARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSSGIAVGMATNIP 186

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H++ E+ +  L +++N   ++E++++YI GPDFPTGG I+  ++ I+E+YR GRG  ++
Sbjct: 187 PHSLDELIDGLLLVLENKNATLEEVMQYIKGPDFPTGG-IIFGKKGIIEAYRTGRGRVKL 245

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E       IVV E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES +D   V
Sbjct: 246 RAKTHI-EKKPNKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDKDGIRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R    D+++ ++F  + ME+ F + M  ++  + P+V  L  +LK +L HR+ V+
Sbjct: 305 VIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAIN-NKEPKVFNLIELLKLFLNHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
            RR+ F ++    R  IL+GL IA  NIDE+I +I+N          +V++F L+E Q +
Sbjct: 364 IRRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE  ++++EL  L+AE  ++D +L S       I  E+ E+K  F   
Sbjct: 424 AILDMRLSKLTGLEREKLEAELAELMAEIARLDEILKSETLLEKLIKDELLEIKNKFKVP 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                                   +       +           K       A+   + D
Sbjct: 484 RITEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDD 543

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV 607
            ++    ++T D ++ ++  G+ Y L    +        G+A+  LI L  ++ I     
Sbjct: 544 FIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLIQLQPDEKIKAIIP 603

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---- 660
              +  +  L   +  G       SE       G   + +   +++   + V G+     
Sbjct: 604 TTDFAESKSLAFFTKNGIVKRTNLSEFKNIRSIGVRAINLDENDELVTALIVEGEEEPIN 663

Query: 661 -------------------------------------------VAVVGENRKLLIFSIDQ 677
                                                      + +V +    L F + +
Sbjct: 664 LIDELGVETEINEIEAIEAQIDEENSEENDENAAEGSDDSEKMLFIVTKKGMCLKFKLSK 723

Query: 678 IPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           + +M R  +GV    +K+ G                +  + +   +        L  RGG
Sbjct: 724 VRQMGRTARGVTGIKFKEAGDEVVGAAVIENNDQEVLSISQKGIGKRTTAEEYRLTNRGG 783

Query: 736 VGSLVPKGFPRSGKFLS 752
            G +  K   R+G  + 
Sbjct: 784 KGVICMKLTNRTGDLIG 800



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/382 (8%), Positives = 94/382 (24%), Gaps = 55/382 (14%)

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++           +    +       +  + +                         
Sbjct: 503 NENMVVTITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDD-----------------DFI 545

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
                  +   +  +  R           L   ++  I                      
Sbjct: 546 ESFFTSNTHDTLMFVTDR---------GQLYWLKVYKIPEGSRT---------------A 581

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
                + L  L+  E+ +      +    K       N   ++ N            F  
Sbjct: 582 KGKAVVNLIQLQPDEKIKAIIPTTDFAESKSLAFFTKNGIVKRTN---------LSEFKN 632

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
              +G R     E      A + +   E   +   +     I  +++    +   + +E 
Sbjct: 633 IRSIGVRAINLDENDELVTALIVEGEEEPINLIDELGVETEINEIEAIEAQIDEENSEEN 692

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFV 607
           D         +   + +++  G         +         +  +       ++V  A +
Sbjct: 693 DENAAEGSDDSEKMLFIVTKKGMCLKFKLSKVRQMGRTARGVTGIKFKEAGDEVVGAAVI 752

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKV--SSEEKMKLVVKVTGDHVAV 663
            ++  ++L +S KG        E     R GK    +K+   + + + +V+      +  
Sbjct: 753 ENNDQEVLSISQKGIGKRTTAEEYRLTNRGGKGVICMKLTNRTGDLIGVVMVDDEQDLMA 812

Query: 664 VGENRKLLIFSIDQIPEMSRGK 685
           +  + K++   +  I +  R  
Sbjct: 813 LTSSGKMIRVDMQSIRKAGRNT 834


>gi|331693905|ref|YP_004330144.1| DNA gyrase subunit A [Pseudonocardia dioxanivorans CB1190]
 gi|326948594|gb|AEA22291.1| DNA gyrase, A subunit [Pseudonocardia dioxanivorans CB1190]
          Length = 839

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/756 (30%), Positives = 379/756 (50%), Gaps = 20/756 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P + DG KPVHRR++++M E G     ++ K
Sbjct: 19  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRRVLYSMGENGFRPDRSYVK 78

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   D AAA RYTE 
Sbjct: 79  CARVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSRGNDPAAAMRYTEC 138

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +LQ ++E+ VDF D Y+ +  EPVV PS+ PNLL NG+ GIAVGMAT+IP H
Sbjct: 139 RLSPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLLINGSVGIAVGMATNIPPH 198

Query: 195 NVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+    +  ++N E S E+    L+  I GPDFPT G ++  R+ I  +YR GRG  
Sbjct: 199 NLREVGAGVVWALENHEASDEELLEALMARIPGPDFPTAG-LIVGRDGIESAYRTGRGSI 257

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
           R+R+   VEE  +G   +VVTE+PYQV    LIE IA ++   ++  + +I DE S    
Sbjct: 258 RMRSVVEVEEDAKGRTILVVTELPYQVNPDNLIESIASMVRDGKLTGIAEINDESSDRIG 317

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++F   R     +++ +++  + ++T F +NM  +    VP+ + LD +++ ++ H+ 
Sbjct: 318 MRIVFTLKRDAVAKVVLNNLYKHTQLQTSFGVNMLAIVD-GVPRTLRLDQVVRNYIRHQI 376

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR  +     +  ++    + + 
Sbjct: 377 EVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASETVDVARQGLIDLLDVDDI 436

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++LR L  LE  +I  EL  +  E      +L   ++Q   +  E+ E+ +  
Sbjct: 437 QAQAILDMQLRRLAALERQKIIDELAEIEREIADYQDILARPERQRQIVRDELTEIVDKH 496

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                           +    A     +   E      +     R+ K     +     K
Sbjct: 497 GDERRSRLVADDGDVTNEDLIAVEDVVVTITETGYAKRTKTDLYRAQKRGGKGVQGATLK 556

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           + D +       T D +L  +  G+ Y L A  L   +    G+ +  L+ L  ++ I  
Sbjct: 557 QDDIVAHFFVCSTHDWMLFFTNKGRVYRLKAYELPEANRNARGQHVANLLALQPDEHIAQ 616

Query: 605 AFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH 660
                       L++ +  G        +  +N   G   + +  E+++   V  +  D 
Sbjct: 617 VMQIKDYQAAPYLVLATRSGLVKKSRLEDFDSNRSGGLIGINLRDEDELVGAVLCSADDD 676

Query: 661 VAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           + +V    + + F+ D   +  M R   GV    + DG     I   + +    + +   
Sbjct: 677 LLLVSAEGQSIRFTADDAALRPMGRATSGVLGMRFNDGDRLLSIGV-VQDDKFVLVATAG 735

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +        +  RGG G L  +   R G  + +
Sbjct: 736 GYAKRTPIEDYPVQGRGGKGVLTLQYDRRRGTLVGA 771



 Score = 81.0 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 6/160 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
               D +LL+S +G++    A +      G   +  L +  N    +++  V      +L
Sbjct: 671 CSADDDLLLVSAEGQSIRFTADDAALRPMGRATSGVLGMRFNDGDRLLSIGVVQDDKFVL 730

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLL 671
           V ++ G A      +     R GK  L +  + +   +   + V   D +  +     ++
Sbjct: 731 VATAGGYAKRTPIEDYPVQGRGGKGVLTLQYDRRRGTLVGALIVGIDDELYAITSTGGVI 790

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
             S  ++ +  R  KGVRL +  D      +     +   
Sbjct: 791 RTSAREVRKAGRQTKGVRLMNLGDNATLQAVARNAEDDAD 830


>gi|219682110|ref|YP_002468494.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219621843|gb|ACL29999.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/777 (31%), Positives = 401/777 (51%), Gaps = 45/777 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 +  V++   L+  YL Y++S I  RA+PD+RDG KPVHRRI+ AM  +  D+  
Sbjct: 2   KDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  +L  ++++ V+F   Y+  +  P + P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LA IDN +I++E+L+++I GPDFPT   I+  +  I E+YR G+G  
Sbjct: 182 IPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAA-IINGKSGIEEAYRTGKGKI 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  + +        IV  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D 
Sbjct: 241 YIRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++  ++ L+ ++  F +NM  L     P+ + L  ILK +L+HR+
Sbjct: 301 MRIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALC-QGQPKTLSLKEILKNFLSHRQ 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLI-----------------AYLNIDEIIAIIRNEDK 412
           E++ RRS F +  +  R+ IL+GL +                 +      II      +K
Sbjct: 360 EIIIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEK 419

Query: 413 PKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                    +  +E QV AIL+LRL  +  LE+ +I  E ++L+ + +++  +L + K+ 
Sbjct: 420 INYLAKKHEYYFSEKQVQAILDLRLHKITNLEQEKIIIEHNDLIKKTKELKEILENPKKM 479

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-- 529
           +  I  E+  ++  FS      +RRT   E          + +I +E + V +S+ G+  
Sbjct: 480 FEVIKSELLSIQNNFSD-----KRRTKITENHSD---INMEDLINQEDVVVTLSHSGYVK 531

Query: 530 ------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS- 582
                   + +      SA   KE D ++  + A+T D IL  S+ G  Y +    L   
Sbjct: 532 YQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPES 591

Query: 583 -GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                G  I  L+ L+  + I        Y     + + ++ G       S+       G
Sbjct: 592 SRHARGRPIVNLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAG 651

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              + + + +++  V    G +++ +  +N K++ F  + +  M R   GV+    K   
Sbjct: 652 IIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKGIKIKKND 711

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +     +G + + +    Y +        +  R   G +  K   ++GK + +
Sbjct: 712 KVVSLIVPKNKG-SILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGA 767


>gi|227541341|ref|ZP_03971390.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182892|gb|EEI63864.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 861

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/765 (29%), Positives = 377/765 (49%), Gaps = 23/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ N    + V  + L   ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDENLF--DRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F KS+R V + +G+ HPHGD ++YD+LVRLAQP+  RYP++ GQGNFG+   D 
Sbjct: 59  YRPERGFVKSSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDG 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + ED V+F+  Y+ + +EP V PS+ PNLL NG++GIAV
Sbjct: 119 PAAMRYTECKLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   +++NP+ S ++     +E + GPDFPT   ++   + I +
Sbjct: 179 GMATNIPPHNLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAA-LIVGDQGIKD 237

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  ++R    +EE   G   IV+TE+PY V    L+  IA+ I   ++P    I
Sbjct: 238 AYTTGRGSIKMRGVTSIEEEK-GRTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKI 296

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R   P +++ ++F  S +E+ F +NM  +    VP+ + LD +
Sbjct: 297 DDESSDRVGMRIVVTLKRDAVPRVVLNNLFKHSALESNFGVNMLSIVD-GVPRTLRLDQM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L  +  H+ +V+ RR+ FR+ A ++R  IL+GL+ A   +DE+IA+IR        +  +
Sbjct: 356 LTLYTDHQVDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E Q   IL+++LR L  LE  +I  EL  L      +  +L   ++Q   +  
Sbjct: 416 MELLDVDEEQAQHILDMQLRKLAALERQKIIDELAELENTIADLKDILAKPERQRKIVED 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+RE+ +             T         A     +          +     RS K   
Sbjct: 476 ELREIVDKHGDERRTQLVAATGDVTDEDLIAQENVVVTITSGGYAKRTKVDAYRSQKRGG 535

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
             +     K  D ++      T D IL  +  G+ Y L A  +        G+ +  L++
Sbjct: 536 KGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYEIPEASRTARGQHVANLLE 595

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
               + I        Y+    L++ + KG       ++  ++   G   + ++  + +  
Sbjct: 596 FQPGETIAQVIQIQSYEDEPYLVLATRKGRVKKSRLTDYESSRSAGLIAINLNEGDSLIG 655

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
            V  +G D + +V +  + + FS     +  M R   GV+   +KD      +C    +G
Sbjct: 656 AVLSSGEDDLLLVSQRGQAMRFSAADDVLRPMGRATAGVKGMRFKDDDELLSMCVT-SDG 714

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    Y +           RGG+G    K  P+ GK + +
Sbjct: 715 DYLLVATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQPKRGKLIGA 759



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 91/245 (37%), Gaps = 14/245 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADK--ATLQQAMIEKEPITVVISNRGWIRSLKS 535
            ++  +   +  T  G+      E    +     +Q    E EP  V+ + +G ++  + 
Sbjct: 572 RLKAYEIPEASRTARGQHVANLLEFQPGETIAQVIQIQSYEDEPYLVLATRKGRVKKSRL 631

Query: 536 HSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA-GNLLSGRGHGE 588
                     L A++  EGDSL  A+ +   D +LL+S  G+A    A  ++L   G   
Sbjct: 632 TDYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPMGRAT 691

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS--- 645
           A    +    + ++++  V      LLV +  G        E  A  R G     +    
Sbjct: 692 AGVKGMRFKDDDELLSMCVTSDGDYLLVATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQP 751

Query: 646 SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
              K+   + V  GD +  +     ++   + QI   SR   GVRL +  +G     I  
Sbjct: 752 KRGKLIGALAVNEGDEIMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNLPNGVSLYAIDR 811

Query: 704 KICEG 708
            + + 
Sbjct: 812 NVEDS 816


>gi|242281241|ref|YP_002993370.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638]
 gi|242124135|gb|ACS81831.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638]
          Length = 817

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/754 (33%), Positives = 398/754 (52%), Gaps = 28/754 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +++   L++ YL Y+LS I  RAIPD+RDG KPVHRRI++AM E+G  +  ++KKSAR+
Sbjct: 3   QITIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRSYKKSARV 62

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYTEARM++
Sbjct: 63  VGDVIGKYHPHGDSAVYDALVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEARMSK 122

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++   L  +++  VDFRD Y+    EP V P+K PNLL NGTSGIAVGMAT+IP HN+ E
Sbjct: 123 LSSEFLADLEKKTVDFRDNYDNSLQEPSVLPTKVPNLLLNGTSGIAVGMATNIPPHNLGE 182

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    + L+DNPE  IE L+++I GPDFPTG +    +  + E+Y  GRG  ++R    +
Sbjct: 183 LINGTVHLLDNPECEIEDLMDFIKGPDFPTGALCFGGK-GLREAYLTGRGSIKIRGVVNI 241

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE   G   IV+TEIPY + KS ++EKIA+L+   +I  + D+RDES      V+    +
Sbjct: 242 EEKKNGRQSIVITEIPYALNKSSMVEKIAQLVGEGKIEGVSDLRDESDRKGIRVVVDLKK 301

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++ S++  + +E  F +   +      PQ+M L  IL  +L HRREV+ RR+ F
Sbjct: 302 GAIADIIINSLYKFTQLEQSFGI-NMMAVNANRPQLMNLKQILAAFLEHRREVIIRRTRF 360

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLR 435
            +   ++R  IL+GL IA  NIDE++ IIR            + RF L++ Q  AIL++R
Sbjct: 361 DLDKCEKRAHILEGLRIALDNIDEVVKIIRGSSNGDEARIGLMDRFELSKVQAQAILDMR 420

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  ++  E   +L + E   S+L + +     I  E+ E+K+ ++       R
Sbjct: 421 LQRLTNLEHEKLLEEYAEILKKIEYFKSILANEEVLKGVIRDELVEIKDNYATE-----R 475

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           +T   + +        + +I  +   + +S RG+I+          K     ++ +  K+
Sbjct: 476 KTVLMDHNPD--DIDIEDLIPDDDAVITLSRRGYIKRTPLSNYQKQKRGGKGIAGVQTKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
           GD +   L       +LL ++ GK + +    +           I  L+ L  ++ I TA
Sbjct: 534 GDFIHTFLTTSNHQYLLLFTSKGKMFKIKVHQVPEASRIARGAHIANLLPLEKDETIATA 593

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                 +  C  L V+  G       +      + G   + +   + +  V +V+ D   
Sbjct: 594 MTMREFEEECFFLFVTKSGMIKRSSIALYRNCRQSGIRAVALKEGDALITVKEVSADSEA 653

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-LTWIDSAGRSY 719
            +V  N   + FS      M R   GV+  + + G           E  +  +  +   Y
Sbjct: 654 VLVTRNGTSIRFSCQDARAMGRVASGVKGIALRPGDEVVSGVVTGDEERVQLLTISEGGY 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +     +  RGG G +  +   ++GK L S
Sbjct: 714 GKRTDIDQHRIQTRGGKGIISMRVTTKTGKVLGS 747



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 52/156 (33%), Gaps = 6/156 (3%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNA 623
           L++ +G +      +  +       ++ +     ++ +      D    +LL +S  G  
Sbjct: 655 LVTRNGTSIRFSCQDARAMGRVASGVKGIALRPGDEVVSGVVTGDEERVQLLTISEGGYG 714

Query: 624 FIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
              +  +    TR GK  + +     + + +  ++    D V ++    K++   +  + 
Sbjct: 715 KRTDIDQHRIQTRGGKGIISMRVTTKTGKVLGSIMVSPEDEVVLLTSGNKIIRMGVKDVS 774

Query: 680 EMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            + R  +GVRL    DG                   
Sbjct: 775 LVGRATQGVRLVRMDDGDHVVGFDLVQDANEEITSE 810


>gi|219681554|ref|YP_002467939.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471237|ref|ZP_05635236.1| DNA gyrase subunit A [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|219624397|gb|ACL30552.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/777 (31%), Positives = 401/777 (51%), Gaps = 45/777 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 +  V++   L+  YL Y++S I  RA+PD+RDG KPVHRRI+ AM  +  D+  
Sbjct: 2   KDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  +L  ++++ V+F   Y+  +  P + P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LA IDN +I++E+L+++I GPDFPT   I+  +  I E+YR G+G  
Sbjct: 182 IPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAA-IINGKSGIEEAYRTGKGKI 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  + +        IV  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D 
Sbjct: 241 YIRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++  ++ L+ ++  F +NM  L     P+ + L  ILK +L+HR+
Sbjct: 301 MRIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALC-QGQPKTLSLKEILKNFLSHRQ 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLI-----------------AYLNIDEIIAIIRNEDK 412
           E++ RRS F +  +  R+ IL+GL +                 +      II      +K
Sbjct: 360 EIIIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEK 419

Query: 413 PKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                    +  +E QV AIL+LRL  +  LE+ +I  E ++L+ + +++  +L + K+ 
Sbjct: 420 INYLAKKHEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKM 479

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-- 529
           +  I  E+  ++  FS      +RRT   E          + +I +E + V +S+ G+  
Sbjct: 480 FEVIKSELLSIQNNFSD-----KRRTKITEN---HSNINMEDLINQEDVVVTLSHSGYVK 531

Query: 530 ------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS- 582
                   + +      SA   KE D ++  + A+T D IL  S+ G  Y +    L   
Sbjct: 532 YQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPES 591

Query: 583 -GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                G  I  L+ L+  + I        Y     + + ++ G       S+       G
Sbjct: 592 SRHARGRPIVNLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAG 651

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              + + + +++  V    G +++ +  +N K++ F  + +  M R   GV+    K   
Sbjct: 652 IIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKGIKIKKND 711

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +     +G + + +    Y +        +  R   G +  K   ++GK + +
Sbjct: 712 KVVSLIVPKNKG-SILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGA 767


>gi|329942858|ref|ZP_08291637.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10]
 gi|332287451|ref|YP_004422352.1| DNA gyrase subunit A [Chlamydophila psittaci 6BC]
 gi|313848030|emb|CBY17028.1| DNA gyrase subunit A [Chlamydophila psittaci RD1]
 gi|325507182|gb|ADZ18820.1| DNA gyrase subunit A [Chlamydophila psittaci 6BC]
 gi|328815118|gb|EGF85107.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10]
 gi|328914699|gb|AEB55532.1| DNA gyrase, A subunit [Chlamydophila psittaci 6BC]
          Length = 830

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 391/762 (51%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++  P++SIE++LE + GPDFPTGG ++   E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGG-LICGSEGIRSTYYTGRGKIKVR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IA+L+  K +  + D+RDES +D   V
Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR EV+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDIQVTFGANMLALDK-NLPRTMNIHRMISAWVRHRTEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +D+++  IRN D  +        +F  TE+Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSDSKEHAKHQLIEKFGFTEHQSI 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +I+ E D L+ +      +L       + I  E++E++++    
Sbjct: 423 AILELRLYQLTGLEAEKIQKEYDELVNKIAYYKRVLADEGLVKDIIRNELQELQKLHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRTT      AD     + +I  EP+ + IS   +++ +                
Sbjct: 483 -----RRTTIE--FDADDIRDIEDIITNEPVIITISGDDYVKRMPVKVFREQKRGGHGVS 535

Query: 550 SLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--- 597
              +            A T D +L+ +  G+ Y L    L  G    +   ++  L    
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +++   L + +  G    V         +KG   L++   +++   V
Sbjct: 596 PGEQLAAVLNIKNFENAGFLFLATKHGVVKKVALDAFSNPRKKGIRALEIDDGDELIAAV 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +T +   V +       + F  D++  M R  +GVR  S K+     V C  + +  + 
Sbjct: 656 HITSEDEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVVACQIVRDDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RGGVG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERNGDVLGA 757



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 57/168 (33%), Gaps = 6/168 (3%)

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 ++++L +  G A   P   +         ++ +   N    +V   +      +
Sbjct: 656 HITSEDEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVVACQIVRDDQSV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           LVV   G     +  +     R G       +   + + +  +     D + ++    + 
Sbjct: 716 LVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERNGDVLGAISVTDHDSILLMSAQGQA 775

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAG 716
           +  ++  +  M R  +GVRL   K+G  +  +    + E  T ++   
Sbjct: 776 IRINMQDVRVMGRSTQGVRLVHVKEGDTLVAMEKLSLNEDETLMNIEE 823


>gi|297621240|ref|YP_003709377.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
 gi|297376541|gb|ADI38371.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
          Length = 820

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/760 (30%), Positives = 379/760 (49%), Gaps = 31/760 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E +   ++   +++ YL Y++S I  RA+PD RDG KP  RRI++AM  + L  G   +
Sbjct: 6   NELIIPRNVEDEMKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRLLNLSPGGKHR 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+Q +Y +LVR+AQP++ RY L+ GQGNFG++DGD  AA RYTE
Sbjct: 66  KCAKISGDTSGDFHPHGEQVIYPTLVRMAQPWMMRYRLVDGQGNFGSVDGDPPAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  +  ++  +D++ VD    Y+E  SEP VFP+KFPNLL NG+SGIAVGMAT+IP 
Sbjct: 126 ARLTHASIQLMDDLDKNTVDMVPNYDETRSEPTVFPAKFPNLLCNGSSGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A   ++DNP  SI+++++ +  PDFPTGG I+     + E+Y  GRG   +R
Sbjct: 186 HNLKELINATKLVLDNPNTSIQEIMQVMPAPDFPTGG-IICGYRGVKEAYHTGRGKIILR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
               + E  +    +V+ +IPY V KSRLIE+IAEL   K +  + D+RDES +    ++
Sbjct: 245 GVVNI-EEKKDREILVIDQIPYNVNKSRLIEQIAELTNNKSVTGISDLRDESDKSGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   PD+++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR EV+ 
Sbjct: 304 IELKRGEIPDVIINQLYKFTDLQVTFGCNMLALDK-GLPRTMNIKQLIGSWVDHRIEVVR 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDA 430
           RR+ + +Q  + R+ IL+G L A  N+DE++ IIR  +  +         F  +  Q +A
Sbjct: 363 RRTRYELQKAEARLHILEGYLKAIDNLDEVVKIIRASNHREEAKDALIEHFEFSIKQANA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L+LRL  L  LE  +I+SE D LL + E   ++L S +   + I  E+ E++       
Sbjct: 423 VLDLRLYQLTGLERDKIQSEYDELLKKIEYYRAVLASEQMVRDIIKEELDEIQVKHKSE- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               R T   E   A+     + +I  EP  + IS   +I+ +   +             
Sbjct: 482 ----RATQIVE---AEGDMDIEDLIANEPAIITISQDDYIKRMPVDTFREQRRGGTGVVG 534

Query: 551 LKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL---NH 598
                          A+T D +L+ +  G+ Y L    +  G    +   L+  L     
Sbjct: 535 FNQKKEEDVLKGLYVANTHDHLLVFTNLGRCYWLKVWQIPEGSRRSKGKPLVNLLSDIRS 594

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + I T      ++    +L+ +  G              R G   + +   ++++    
Sbjct: 595 EESIATVLQTSNFEGDRYVLMATRNGIVKKTPIDAFSNPRRNGIWAIDIVEGDELEGARL 654

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
           V G+  V +   N   + F   ++  M R  +GV+  S K      V C  +    T + 
Sbjct: 655 VEGEQQVMLFTHNGMAVRFDHHKVRSMGRMARGVKGVSLKGDNDRVVGCEVVSGNETVLI 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +           RGGVG        R+GK + +
Sbjct: 715 VCENGFGKRSTVSDFRQTNRGGVGVRSIITSERNGKVVGA 754



 Score = 84.1 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/371 (11%), Positives = 112/371 (30%), Gaps = 20/371 (5%)

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
            +      VL+  ++ + +  + + +  + H+ E   +            +   +  +I 
Sbjct: 448 KKIEYYRAVLASEQMVRDIIKEELDEIQVKHKSERATQIVEAEGDMDIEDLIANEPAIIT 507

Query: 397 YLNIDEIIAI-IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
               D I  + +    + +          + + + +L      +    ++ +        
Sbjct: 508 ISQDDYIKRMPVDTFREQRRGGTGVVGFNQKKEEDVLKGL--YVANTHDHLLVFTNLGRC 565

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
              +       S + +   +   + ++            R                   +
Sbjct: 566 YWLKVWQIPEGSRRSKGKPLVNLLSDI------------RSEESIATVLQTSNFEGDRYV 613

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                  ++               + A+   EGD L+ A       +++L + +G A   
Sbjct: 614 LMATRNGIVKKTPIDAFSNPRRNGIWAIDIVEGDELEGARLVEGEQQVMLFTHNGMAVRF 673

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               + S       ++ +     N  +V   V      +L+V   G       S+     
Sbjct: 674 DHHKVRSMGRMARGVKGVSLKGDNDRVVGCEVVSGNETVLIVCENGFGKRSTVSDFRQTN 733

Query: 636 RKG---KTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
           R G   ++ +      K+   V +T D  + ++  + + L  S+  +  M R  +GV+L 
Sbjct: 734 RGGVGVRSIITSERNGKVVGAVCITDDDGLLMMSSSGQTLRISMKDLRVMGRNTQGVKLA 793

Query: 691 SYKDGGISDVI 701
           + ++  I   I
Sbjct: 794 NLREDDILVAI 804



 Score = 45.5 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 11/181 (6%)

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK- 546
            +    RR   +              ++E E   ++ ++ G       H V       + 
Sbjct: 628 DAFSNPRRNGIWAIDIVEGDELEGARLVEGEQQVMLFTHNGMAVRFDHHKVRSMGRMARG 687

Query: 547 --------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                   + D +         + +L++  +G        +       G  ++ +I    
Sbjct: 688 VKGVSLKGDNDRVVGCEVVSGNETVLIVCENGFGKRSTVSDFRQTNRGGVGVRSIITSER 747

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           N  +V A        LL++SS G    +   ++    R   G     +  ++ +  + KV
Sbjct: 748 NGKVVGAVCITDDDGLLMMSSSGQTLRISMKDLRVMGRNTQGVKLANLREDDILVAIQKV 807

Query: 657 T 657
            
Sbjct: 808 E 808


>gi|315037236|ref|YP_004030804.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112]
 gi|325955727|ref|YP_004286337.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC]
 gi|312275369|gb|ADQ58009.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112]
 gi|325332292|gb|ADZ06200.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC]
          Length = 821

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/763 (29%), Positives = 391/763 (51%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTGGII+        +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYR-AYETGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V+EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +     P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVD-GAPHYLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIR+          ++SRF L 
Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E  +L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIADYKDILAKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSH 536
            F       +RRT     +    +   + +IEK+ I + +++ G+I+ +           
Sbjct: 480 RFGD-----KRRTEIG--ASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +       +   +  L+
Sbjct: 533 GKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNLL 592

Query: 595 DLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T            L  ++  G       SE       G   L +   +++ 
Sbjct: 593 QLEKGEKVQTVINIPENADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELS 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+   G+   ++G +    + F    +  M R   GVR  + ++     V    + +  
Sbjct: 653 NVLTTDGNQNILIGTHLGYAVTFKESDVRAMGRTAAGVRGINLRENDYV-VGSGVLGKDD 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +        +  RGG G        ++G    
Sbjct: 712 QVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 66/193 (34%), Gaps = 6/193 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  ++GD L   L       IL+ +  G A T    ++ +
Sbjct: 623 TVKRTHVSEFSNIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFKESDVRA 682

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                 A    I+L  N  +V + V     ++LV+S KG       +E     R GK   
Sbjct: 683 MGRTA-AGVRGINLRENDYVVGSGVLGKDDQVLVISEKGYGKRTPAAEYPVKGRGGKGIK 741

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     ++V   G  + V+  N  ++ F    + +  R   GVRL    D   
Sbjct: 742 TANITEKNGPLAGVIVVDKGKDIMVITTNGIMIRFKTKDVSQTGRSTMGVRLIKVNDDSK 801

Query: 698 SDVICFKICEGLT 710
              +     E   
Sbjct: 802 VASLTIVPTEAEQ 814


>gi|217967649|ref|YP_002353155.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724]
 gi|217336748|gb|ACK42541.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724]
          Length = 808

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/757 (32%), Positives = 390/757 (51%), Gaps = 28/757 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V  V L   +E  YL YA+S I  RA+PD RDG KPV RRII++M E G+     ++
Sbjct: 4   KSKVILVGLEREMENSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VG V+G+ HPHGD +VY++LVR+AQ F  RYPLI G GNFG+IDGD  AA RYTE
Sbjct: 64  KSAHVVGNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R++ +A  ++  +++D VDF   Y+    EPVV P+K P LL NG+SGIAVGMAT+IP 
Sbjct: 124 VRLSPIASELIADIEKDVVDFVPNYDNSLREPVVLPTKIPQLLMNGSSGIAVGMATNIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A L LI+ P   IE+LL +I GPDFPTGGII+   + I ESY  G+G   VR
Sbjct: 184 HNLGELIDALLYLIEKPTAEIEELLNFIKGPDFPTGGIIIG-TKGIRESYLTGKGKLTVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +EE  +G   I++ EIPY V KS L+ +IAEL+  K+I  ++D+RDES      V+
Sbjct: 243 GKLVIEETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQEKKITGIKDLRDESDRHGIRVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  DP +++  ++  + ++T F + + +  +   P++  L  +L  +L HR++V+ 
Sbjct: 303 IELKKDADPKIVINQLYKHTQLQTTFGV-IMLAILDGQPKIFNLKELLTIFLEHRKDVVI 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++    R  IL+GLLIA  ++DE+   I    N +K K  ++ RF LT+NQ  A
Sbjct: 362 RRTKYDLEKAKARAHILEGLLIALDHLDEVISIIRQAENSEKAKEKLMLRFKLTQNQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L +LE+ ++  E+  +      ++ +L   K+ W  I+ E++E+K+ ++   
Sbjct: 422 ILDMRLHQLTRLEKERLMEEMKQIKENISILERILKDEKELWRVISEELKEIKKKYADE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               R+T+  E          + ++   P  + I+  G+I+          +     L+ 
Sbjct: 481 ----RKTSIEE--EEKSDITIEDILPDNPEVICITQDGYIKRLPLSTYQLQRRGGKGLNT 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           L     D +   +   T   + L S  GK Y++    L       +  AI+  +++ + +
Sbjct: 535 LANNNDDVITSFVVTSTRSTLFLFSNKGKVYSIKTYELDETSRQSKGIAIKEYLNIENEE 594

Query: 601 DIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I                 ++SKG        E     + G   +K+   + +  V   +
Sbjct: 595 RITEIISLSELPKNLYFFFITSKGIVKKTPVEEFENVRKSGIYAIKIGEGDFLVNVFLTS 654

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G + + +       + F       M R  +GV     +    S +    + E    +   
Sbjct: 655 GNNEIIIFTRKGNAIRFHEKDTRPMGRVAQGVIGIKLRKDD-SVIGGVILQESKQIVLVT 713

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +  N       KRGG+G    K   ++G  + 
Sbjct: 714 KYGIGKRVNPQEFSTQKRGGIGIRAIKITSKTGDLIG 750



 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 68/178 (38%), Gaps = 10/178 (5%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            + A+   EGD L         + I++ +  G A      +        + +   I L  
Sbjct: 635 GIYAIKIGEGDFLVNVFLTSGNNEIIIFTRKGNAIRFHEKDTRPMGRVAQGVIG-IKLRK 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKV--SSEEKMKLVV 654
           +  ++   +   + ++++V+  G    V   E     R G     +K+   + + +  V 
Sbjct: 694 DDSVIGGVILQESKQIVLVTKYGIGKRVNPQEFSTQKRGGIGIRAIKITSKTGD-LIGVK 752

Query: 655 KV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            V   D + +  +  +++   ++ IP +SR  +GV+L    +     V+   + E  T
Sbjct: 753 NVSENDEILISTKKGQIIRIPVNNIPILSRNSQGVKLVKLNEDD--SVVSMDLVENET 808



 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 56/152 (36%), Gaps = 10/152 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
               ++ + +G                   +  +  ++ DS+   +    + +I+L++  
Sbjct: 656 NNEIIIFTRKGNAIRFHEKDTRPMGRVAQGVIGIKLRKDDSVIGGVILQESKQIVLVTKY 715

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G    +      + +  G  I+ +   +   D++         ++L+ + KG    +  +
Sbjct: 716 GIGKRVNPQEFSTQKRGGIGIRAIKITSKTGDLIGVKNVSENDEILISTKKGQIIRIPVN 775

Query: 630 EI--IANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            I  ++   +G   +K++ ++ +  +  V  +
Sbjct: 776 NIPILSRNSQGVKLVKLNEDDSVVSMDLVENE 807


>gi|311085922|gb|ADP66004.1| DNA gyrase subunit A [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086493|gb|ADP66574.1| DNA gyrase subunit A [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/777 (31%), Positives = 401/777 (51%), Gaps = 45/777 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 +  V++   L+  YL Y++S I  RA+PD+RDG KPVHRRI+ AM  +  D+  
Sbjct: 2   KDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  +L  ++++ V+F   Y+  +  P + P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LA IDN +I++E+L+++I GPDFPT   I+  +  I E+YR G+G  
Sbjct: 182 IPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAA-IINGKSGIEEAYRTGKGKI 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  + +        IV  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D 
Sbjct: 241 YIRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++  ++ L+ ++  F +NM  L     P+ + L  ILK +L+HR+
Sbjct: 301 MRIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALC-QGQPKTLSLKEILKNFLSHRQ 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLI-----------------AYLNIDEIIAIIRNEDK 412
           E++ RRS F +  +  R+ IL+GL +                 +      II      +K
Sbjct: 360 EIIIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEK 419

Query: 413 PKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                    +  +E QV AIL+LRL  +  LE+ +I  E ++L+ + +++  +L + K+ 
Sbjct: 420 INYLAKKHEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKM 479

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-- 529
           +  I  E+  ++  FS      +RRT   E          + +I +E + V +S+ G+  
Sbjct: 480 FEVIKSELLSIQNNFSD-----KRRTKITENHSD---INMEDLINQEDVVVTLSHSGYVK 531

Query: 530 ------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS- 582
                   + +      SA   KE D ++  + A+T D IL  S+ G  Y +    L   
Sbjct: 532 YQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPES 591

Query: 583 -GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                G  I  L+ L+  + I        Y     + + ++ G       S+       G
Sbjct: 592 SRHARGRPIVNLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAG 651

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              + + + +++  V    G +++ +  +N K++ F  + +  M R   GV+    K   
Sbjct: 652 IIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKGIKIKKND 711

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +     +G + + +    Y +        +  R   G +  K   ++GK + +
Sbjct: 712 KVVSLIVPKNKG-SILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGA 767


>gi|254773059|ref|ZP_05214575.1| DNA gyrase subunit A [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 839

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/769 (28%), Positives = 379/769 (49%), Gaps = 24/769 (3%)

Query: 6   ISNSNTLV----EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++         + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM
Sbjct: 1   MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+ 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ 
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLRQIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN+ E+ EA          + E ++  ++E + GPDFPT G ++   +
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSG-LIVGTQ 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  
Sbjct: 240 GIADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAG 299

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + 
Sbjct: 300 ISNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVD-GVPRTLR 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--- 413
           LD +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     
Sbjct: 359 LDQLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIA 418

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q  
Sbjct: 419 RQGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRG 478

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            +  E+ E+ E    +                  A     +   E      +     RS 
Sbjct: 479 IVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQ 538

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQ 591
           K     +     K+ D ++      T D IL  +T G+ Y   A  L        G+ + 
Sbjct: 539 KRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVA 598

Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+     + I        Y+    L++ +  G     + ++  +N   G   + +   +
Sbjct: 599 NLLAFQPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDND 658

Query: 649 KMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFK 704
           ++   V  +  D + +V  N + + FS     +  M R   GV+   +        +   
Sbjct: 659 ELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDYLLSLNV- 717

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 718 VREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 766



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 12/199 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ +  G ++  K    D +        + ++ D L  A+     D +LL+S 
Sbjct: 618 YEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSA 677

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           +G++    A +      G   +    +  N +  +++  V      LLV +S G A    
Sbjct: 678 NGQSIRFSATDEALRPMGRATSGVQGMRFNADDYLLSLNVVREGTYLLVATSGGYAKRTA 737

Query: 628 ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
             E     R GK  L V       ++   + V  D  +  +     ++  +  Q+ +  R
Sbjct: 738 IEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGR 797

Query: 684 -GKGVRLQSYKDGGISDVI 701
             KGVRL +  +G     I
Sbjct: 798 QTKGVRLMNLGEGDTLLAI 816


>gi|307637387|gb|ADN79837.1| DNA gyrase subunit A [Helicobacter pylori 908]
 gi|325995979|gb|ADZ51384.1| DNA gyrase subunit A [Helicobacter pylori 2018]
 gi|325997574|gb|ADZ49782.1| DNA gyrase subunit A [Helicobacter pylori 2017]
          Length = 828

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/759 (33%), Positives = 398/759 (52%), Gaps = 15/759 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDHLVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A   +++NP   ++++LE++ GPDFPTGG I+  +  IVE+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGG-IIYGKAGIVEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+  + RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTTIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEVAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE FS       + +     +    A     +       V   +               +
Sbjct: 478 KEQFSSPRRTEIQESYESIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLS 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
               E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI L  ++
Sbjct: 538 GSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDE 597

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKV 656
            I+       +     L   +  G       SE   N    G   + +   +++     V
Sbjct: 598 KIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVV 657

Query: 657 TGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             +  H+ +       + F ++ + E+ R  +GVR     +            +    + 
Sbjct: 658 DKNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVRGIKLNENDFVVGAVVISDDSNKLLS 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +     +           RGG G +  K   ++G  +S
Sbjct: 718 VSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVS 756



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 6/160 (3%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G     P  ++         ++ +    ++  +    + D + KLL VS  G
Sbjct: 663 HLLIASHLGIFIKFPLEDVREIGRTTRGVRGIKLNENDFVVGAVVISDDSNKLLSVSENG 722

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSID 676
                        +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI 
Sbjct: 723 LGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIK 782

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            I E  R   GV+L +  D  +    C K  E      S+
Sbjct: 783 DIRETGRNASGVKLINTTDKVVYVNSCPKEEEPENLETSS 822


>gi|327182555|gb|AEA31002.1| DNA gyrase subunit A [Lactobacillus amylovorus GRL 1118]
          Length = 820

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/763 (29%), Positives = 391/763 (51%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTGGII+        +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYR-AYETGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V+EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +     P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVD-GAPHYLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIR+          ++SRF L 
Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E  +L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIADYKDILAKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSH 536
            F       +RRT     +    +   + +IEK+ I + +++ G+I+ +           
Sbjct: 480 RFGD-----KRRTEIG--ASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +       +   +  L+
Sbjct: 533 GKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNLL 592

Query: 595 DLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T            L  ++  G       SE       G   L +   +++ 
Sbjct: 593 QLEKGEKVQTVINIPENADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELS 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+   G+   ++G +    + F    +  M R   GVR  + ++     V    + +  
Sbjct: 653 NVLTTDGNQNILIGTHLGYAVTFKESDVRAMGRTAAGVRGINLRENDYV-VGSGVLGKDD 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +        +  RGG G        ++G    
Sbjct: 712 QVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 66/193 (34%), Gaps = 6/193 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  ++GD L   L       IL+ +  G A T    ++ +
Sbjct: 623 TVKRTHVSEFSNIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFKESDVRA 682

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                 A    I+L  N  +V + V     ++LV+S KG       +E     R GK   
Sbjct: 683 MGRTA-AGVRGINLRENDYVVGSGVLGKDDQVLVISEKGYGKRTPAAEYPVKGRGGKGIK 741

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     ++V   G  + V+  N  ++ F    + +  R   GVRL    D   
Sbjct: 742 TANITEKNGPLAGVIVVDKGKDIMVITTNGIMIRFKTKDVSQTGRSTMGVRLIKVNDDSK 801

Query: 698 SDVICFKICEGLT 710
              +     E   
Sbjct: 802 VASLTIVPTEAEQ 814


>gi|317489248|ref|ZP_07947765.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA]
 gi|316911649|gb|EFV33241.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA]
          Length = 932

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/760 (34%), Positives = 401/760 (52%), Gaps = 36/760 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V++  L   ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM+E G        KSA
Sbjct: 86  VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGD +VYD++VRLAQPF  R PL+ G GNFG+IDGD AAA RYTE+R+
Sbjct: 146 RTVGDVIGKYHPHGDFAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VA  +L+ +D++ VDF+  Y+E   EP V P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A   ++DNP+++ E+L++ + GPDFPTGG I+  ++ I ++Y  GRG   VRA+ 
Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGG-IIMGKKGIRDAYETGRGSLTVRAKC 324

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VEE   G   IVVTEIPYQV + RL+EK+ EL+  K++P + +I D +      ++   
Sbjct: 325 KVEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDL 384

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +   P +++  ++  + ++  F + M  L     P+V+ L  +L  ++AH+ EV+ RR+
Sbjct: 385 KKDAIPQVVLNKLYKHTQLQVGFGVIMLSLVD-GAPRVLSLKEMLHYYIAHQEEVIVRRT 443

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILN 433
            + +   + R  IL+GL+IA  NIDEII IIR+    K     M  RF+LT+ Q  AIL 
Sbjct: 444 RYELAKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTERFALTDKQTAAILE 503

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR L  LE  +I+ EL  LL        +L+  +     I  E+ EVK+ F       
Sbjct: 504 MRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQLVHEIIKEELLEVKKKFGSP---- 559

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   E   A K    + +I +E + V ++  G+++          K     +S ++ 
Sbjct: 560 -RRTLLSE---AAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNL 615

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           K+ D ++    A T   +L  ST GK Y L    L        G AI  L+ L   + I 
Sbjct: 616 KDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETIS 675

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGD 659
                  + S   L+  +  G              R G   + +   +++  V +V  G+
Sbjct: 676 AVIATKDFPSDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKDNDRLISVKRVAPGE 735

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGR 717
            V +V    K +++   ++  M R   GVR  +     I+ V+  +I +          +
Sbjct: 736 KVLMVSSAGKAIMWDEGEVRAMGRDTMGVRGMNVPP--IAKVLGMEIAQPDTDLFVITEK 793

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-----KFLS 752
            Y +           RGG G        + G     K ++
Sbjct: 794 GYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLAVMKIVA 833



 Score = 71.0 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 80/223 (35%), Gaps = 19/223 (8%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
             + +  M   E   V  ++       +     L A+  K+ D L         +++L++
Sbjct: 683 FPSDEYLMFATEHGMVKKTSMDLYDRTRRD--GLIAISLKDNDRLISVKRVAPGEKVLMV 740

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           S+ GKA     G + +       ++ + ++     ++   +      L V++ KG     
Sbjct: 741 SSAGKAIMWDEGEVRAMGRDTMGVRGM-NVPPIAKVLGMEIAQPDTDLFVITEKGYGKRT 799

Query: 627 EESEIIANTRKGKTF--LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMS 682
             +E   + R G+    + ++ ++ +  V+K+    D + ++ E    +   +  I E+ 
Sbjct: 800 PIAEYPEHHRGGQGVFTITMTEKKGLLAVMKIVAEDDEIMIMSEEGVCVRTPVSGISELG 859

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           R  +GV +    D      +             + R   +  +
Sbjct: 860 RSTQGVCVMKTADKDRVTAVAI-----------SSRGKKKKAS 891


>gi|161610772|ref|NP_947941.2| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009]
          Length = 913

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/858 (31%), Positives = 406/858 (47%), Gaps = 115/858 (13%)

Query: 1   MGV-DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M   D+          +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++
Sbjct: 1   MSDKDDEKPEGPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            M E G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG
Sbjct: 61  GMYENGFEWNKQYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD  AA RYTE+R+T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG
Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +A +ALID+P +SI+ L + + GPDFPTGGII+  R  I
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIIL-GRAGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y+ GRG   +R +  +E V +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + 
Sbjct: 240 RAAYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIG 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  D   V+    R   P++++  ++  + ++T F  NM  L  G  PQ+M L  
Sbjct: 300 DLRDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVAL-EGGRPQLMNLKD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---- 415
           +L  ++A R +V+ RR+ F +     R  IL GL IA  NIDEII +IRN   P      
Sbjct: 359 LLTVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARET 418

Query: 416 -------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                           L+  Q  AIL+LRL+ L  L   +I  E
Sbjct: 419 LMSRDWPAADVAAMITLIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           LD L  E      +L S  +    +  E+ EVK  F+       RRT   E         
Sbjct: 479 LDKLAVEIADYLEILRSRARVQAIVKTELGEVKAEFATP-----RRTVIAEQEGE---VE 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I++E + V +S+ G+++          +      S +  +E D +     A T   
Sbjct: 531 DEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTP 590

Query: 563 ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KL 614
           +L  S+ G+ Y      L      G G+A+  ++ L   + I T               +
Sbjct: 591 VLFFSSRGQVYKEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDV 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  ++ GN    + S+ +   R G   +K+   E +  V   T  D V +     + + F
Sbjct: 651 MFATTGGNVRRNKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRF 710

Query: 674 SIDQIPEM-SRGK-GVRLQSYKDGGISDVICF---------------------------- 703
            +  +     R   GVR  +   G     +                              
Sbjct: 711 PVPDVRVFSGRTSMGVRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAIRRAATGE 770

Query: 704 ----------KICEGLT------------------WIDSAGRSYNRSENDLLGWLGKRGG 735
                     +  EG T                   +  +   Y +  +        RGG
Sbjct: 771 ENEPVETPEAEAEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGG 830

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +      R+GK ++S
Sbjct: 831 KGIVAMSVNSRNGKLVAS 848



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSS-EEKMKLVVKVTG-DHVAVVG 665
           S   +L +S  G        E     R GK    + V+S   K+     V   D + +V 
Sbjct: 802 SEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRNGKLVASFPVEDSDQIMLVT 861

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +N +L+   ++ I    R  +GV + +  D      +
Sbjct: 862 DNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSV 898



 Score = 42.8 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 5/110 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L +S +G      +    +    G+ I  +   + N  +V +F  + + ++++V+  
Sbjct: 804 QFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRNGKLVASFPVEDSDQIMLVTDN 863

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           G         I    R   G      + +EK+  V ++        GEN 
Sbjct: 864 GQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVERIPETDD---GENG 910


>gi|117924909|ref|YP_865526.1| DNA topoisomerase IV subunit A [Magnetococcus sp. MC-1]
 gi|117608665|gb|ABK44120.1| DNA topoisomerase IV subunit A [Magnetococcus sp. MC-1]
          Length = 754

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/740 (47%), Positives = 489/740 (66%), Gaps = 14/740 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN+     E +   +LR  LE RYLAYALSTI  R++PD+RDG KPVHRRI+ AM  + 
Sbjct: 1   MSNTF----EQIDPCNLREELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALR 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD  + +KKSAR+VG+VIGK HPHGDQ+ YD++VRLAQ F  RYPL+ GQGNFGNIDGDS
Sbjct: 57  LDPNSPYKKSARVVGDVIGKYHPHGDQAAYDAMVRLAQEFAVRYPLVDGQGNFGNIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T VA+ +L+ ++ D VDF  TY+    EPVV P++FPNLLANG+SGIAV
Sbjct: 117 AAAMRYTEARLTSVAKALLEDLEMDTVDFMPTYDGSMEEPVVLPARFPNLLANGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM+T++P HNV EI +A L LI  P  SIE+L++++  PDFPTGGI++      +E Y  
Sbjct: 177 GMSTNVPPHNVGEILDACLLLISKPNCSIEELMQHLPAPDFPTGGILMADHAERLEVYSE 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  R+RARW VE++GRG W IVVTEIPYQVQKSRLIE+IA+L+I ++ P L ++RDES
Sbjct: 237 GRGSLRLRARWAVEDLGRGLWQIVVTEIPYQVQKSRLIERIAQLVIDRKCPFLTNVRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            E++RIVL P+ R+LDP+L+M  +F  SD+E+R   N+NV+  G  P+V+ L GIL+ WL
Sbjct: 297 DENLRIVLEPRARTLDPELIMHFLFKHSDLESRASFNLNVIVGGHRPEVLDLKGILRHWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HR  V  RR+S+ ++ I  R+ +L+  LI +LNIDE+I II+  D P PV+++RFSL E
Sbjct: 357 DHRFVVHTRRASYELKKIRERLHLLQAFLIVHLNIDEVIEIIKKNDDPAPVLMARFSLDE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLR+LRKLEE +I+ E++ L A  + ++++L   K  W  I  E++  ++ 
Sbjct: 417 IQAEAILNMRLRNLRKLEEMKIRKEMEELQARADLLEAMLADDKIMWKAIRDELKATRKE 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RRT  C  S  D     +  +EKEPI+V++S  GW+++ K H V+   L F
Sbjct: 477 FAD-----VRRTEIC-GSVEDVHVRPEDFVEKEPISVILSQMGWVKANKGHDVNTEVLRF 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K  D L  +   +T   +  +S  GK +T+ A NL +G+G GE +  + DL+    ++ A
Sbjct: 531 KGDDLLLRSFPCYTNQSVSFISQSGKLFTILASNLPAGKGFGEPLTSMFDLDGGDRVLWA 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
              D   + L+++  G  F V+  ++IAN RKGK  + + S ++   +  V G  V  + 
Sbjct: 591 LPVDPEQEYLLITRLGQGFRVKGVDLIANQRKGKQLITLKSGDQPLHLHPVKGPWVGSIS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
            +R+LLIF I+Q P M++GKGVR+Q    D  + DV  F   EG   +DS  +   +   
Sbjct: 651 RSRRLLIFPIEQFPLMAKGKGVRVQKLGADEVVVDVTTFTDEEGF-VLDSGKK--TKHVT 707

Query: 725 DLLGWLGKRGGVGSLVPKGF 744
           D   W G R G G+++P GF
Sbjct: 708 DYDQWHGNRAGRGAMLPHGF 727


>gi|284931762|gb|ADC31700.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. F]
          Length = 846

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/771 (31%), Positives = 412/771 (53%), Gaps = 27/771 (3%)

Query: 1   MGVDNISNSNTLVEENV-KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  ++ +N   L+ + V K  S+   LE  ++ YA+S I  RA+P+ RDG KPVHRR+++
Sbjct: 1   MNPNDKNNIKELLNKTVVKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
                GL +   ++KSA+IVG V+GK HPHGD ++Y+++VR+AQPF  RY LI G GNFG
Sbjct: 61  GAYTSGLTYDKPYRKSAQIVGHVMGKYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGDSAAA RYTEAR+++++  +L+ +D+D VDF D Y+  + EPVV PS FPNLLANG
Sbjct: 121 SIDGDSAAAMRYTEARLSKISAEMLRNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+      L+ N   +IE+L E+I GPDFPT   I+     I
Sbjct: 181 SSGIAVGMATNIPPHNLSELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEIL-GETGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E +  GRG   VRA+  +EE+      IV+T+IPY V K+ LI KIAEL+  ++I  + 
Sbjct: 240 NEYFNTGRGSVSVRAKSEIEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIA 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  +   ++    R + P++L+  ++  + ++T F + M  L     P+V+ L  
Sbjct: 300 DLRDESNREGIRIVIETKRDVIPEVLLNQLYKSTQLQTNFSVAMLALV-NNQPKVLNLKE 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPV 416
            L+ ++ H+ ++L R+++F ++       I++GL+I      ++ EII   ++ +  K  
Sbjct: 359 ALQIYIDHQFDILLRKTNFELKKAKASAHIVEGLVIATNNIDDVIEIIKNAKDNEDAKNT 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++++ L++ Q  AIL++RLRSL  LE   ++ EL  L    + ++ +L + +++   I+
Sbjct: 419 LMTKYELSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKERRIKIIS 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            ++ E+   F        RRT        +     + +I  E + +  S++G+++     
Sbjct: 479 DQLDEIDHKFGDE-----RRTKI--CYGLNSTIDNEQLIPVETVVITRSSKGYLKRIPIS 531

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
                    V +  ++  E D ++  +   T   +L  +  GK Y + A  +  G    +
Sbjct: 532 AYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISK 591

Query: 589 --AIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
                 LI +  ++ +++    +   +      + KG    V+ SE       GK  +K+
Sbjct: 592 GIPAINLISIEKDEKLMSLLSINDYDSGYFFFSTKKGLVKRVKASEFSRIQNNGKIAIKL 651

Query: 645 SSEEKMKLVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  + +  V+K  GD    +G  +  L+ F  D +  M R  +GV    +K+     +  
Sbjct: 652 TENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSMGRTAQGVIGVKFKNPNDEVIGL 711

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               EG   +    +   +  +     +  RG  G +  K  P++G  +++
Sbjct: 712 SSSHEGSLLLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTPKTGNIINT 762



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 6/190 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  +    A+   E DSL   +     + I +  + G         + S     + +  +
Sbjct: 640 RIQNNGKIAIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSMGRTAQGVIGV 699

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
              N N +++          LL V  KG   + +  E     R  K  + +        +
Sbjct: 700 KFKNPNDEVIGLSSSHEGSLLLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTPKTGNI 759

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
                V G + + ++    K++   + ++ E  R   GV+L S  +   +  V  F + +
Sbjct: 760 INTQLVNGNEELLMISSTGKIVRVPLAEVSEQGRNTSGVKLISLNEKETLQSVAIFDVGQ 819

Query: 708 GLTWIDSAGR 717
             +    +  
Sbjct: 820 DDSQQVGSDN 829


>gi|311087076|gb|ADP67156.1| DNA gyrase subunit A [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/777 (31%), Positives = 401/777 (51%), Gaps = 45/777 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 +  V++   L+  YL Y++S I  RA+PD+RDG KPVHRRI+ AM  +  D+  
Sbjct: 2   KDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  +L  ++++ V+F   Y+  +  P + P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LA IDN +I++E+L+++I GPDFPT   I+  +  I E+YR G+G  
Sbjct: 182 IPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAA-IINGKSGIEEAYRTGKGKI 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  + +        IV  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D 
Sbjct: 241 YIRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++  ++ L+ ++  F +NM  L     P+ + L  ILK +L+HR+
Sbjct: 301 MRIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALC-QGQPKTLSLKEILKNFLSHRQ 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLI-----------------AYLNIDEIIAIIRNEDK 412
           E++ RRS F +  +  R+ IL+GL +                 +      II      +K
Sbjct: 360 EIIIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEK 419

Query: 413 PKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                    +  +E QV AIL+LRL  +  LE+ +I  E ++L+ + +++  +L + K+ 
Sbjct: 420 INYLAKKHEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKM 479

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-- 529
           +  I  E+  ++  FS      +RRT   E          + +I +E + V +S+ G+  
Sbjct: 480 FEVIKSELLSIQNNFSD-----KRRTKITENHSD---INMEDLINQEDVVVTLSHSGYVK 531

Query: 530 ------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS- 582
                   + +      SA   KE D ++  + A+T D IL  S+ G  Y +    L   
Sbjct: 532 YQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPES 591

Query: 583 -GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                G  I  L+ L+  + I        Y     + + ++ G       S+       G
Sbjct: 592 SRHARGRPIVNLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAG 651

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              + + + +++  V    G +++ +  +N K++ F  + +  M R   GV+    K   
Sbjct: 652 IIAINLHTNDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKGIKIKKND 711

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +     +G + + +    Y +        +  R   G +  K   ++GK + +
Sbjct: 712 KVVSLIVPKNKG-SILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGA 767


>gi|228470207|ref|ZP_04055114.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3]
 gi|228308158|gb|EEK17021.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3]
          Length = 860

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/758 (29%), Positives = 388/758 (51%), Gaps = 24/758 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++++M+E G  +    +K
Sbjct: 6   DRIIPVDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNNPTRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR VG+++GK HPHGD SVY++LVRLAQ +  RYPL+ GQGNFG+IDGDS AA RYTE+
Sbjct: 66  CARAVGDIMGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ Q A+ +L+ +D + VDF+D ++ +  EP V P + PNLL NG +GIAVGMAT++  H
Sbjct: 126 RLNQFAQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATNMAPH 185

Query: 195 NVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           N+ E   A +A ID   EI++++L++Y+  PDFPTGG ++   E + E++R GRG   +R
Sbjct: 186 NLTETLNACIAYIDARGEITVDELMQYVKAPDFPTGG-VIYGYEGVKEAFRTGRGRIVIR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +EE       I++ EIPYQV+KS ++ KIA+L+  K+I  + DI DES+     ++
Sbjct: 245 GKADIEEY-HSHERIIIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGIRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  +  +++  ++  SD+E+ F +N   L     P+ + L  ++  ++ HR +V+ 
Sbjct: 304 IDIKKDANAGVVLNYLYKYSDLESYFSVNNIALV-NGRPRQLNLKDLIGHFVDHRHDVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDA 430
           RR+ + ++    R+ IL+GL+IA  +IDE+I IIR+ ++ +  M        L+E Q  A
Sbjct: 363 RRAQYELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLMEAFNLSELQARA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RLR L KL+  +++ E + L    + ++  L+    +   I  E RE+ E +    
Sbjct: 423 IVDMRLRQLTKLDIDKLQHEYNELKERIDYLNLFLSDINMRMELIQEECREIIEKYGDER 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                  +         A     +       +  +     R+     V +     ++ D 
Sbjct: 483 RSEIVYASEDLNPEDFYADEDMVITISHLGYIKRTPLSEFRTQTRGGVGVKGADSRDEDF 542

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF-- 606
           ++    A     ++L +  G+ Y L    +  G    +   IQ L+DL+    I      
Sbjct: 543 VEYIYSATMHATMMLFTATGRVYWLRVFEIPEGSKSSKGRHIQNLLDLDEENRITAFLRI 602

Query: 607 -------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   + +T  L+  + +G       +      + G   + +  ++++  V    G+
Sbjct: 603 KNLTTDADFVNTHYLVFATEQGLIKKTLLAHYANPRKTGVRAINLRDDDQVVSVALSNGN 662

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI----CEGLTWID 713
             + +   N + + F+  ++  M R   GVR     +     V+   +        T + 
Sbjct: 663 CEIFLANRNGRCVRFNEQEVRPMGRTATGVRGIRLDNDPNDKVVGMVVHRLKNSDETILV 722

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + Y +        + KRG  G        ++G+ +
Sbjct: 723 ISEKGYGKRSRIDDYRITKRGAKGVKTINVTDKTGQLI 760


>gi|89898308|ref|YP_515418.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
 gi|89331680|dbj|BAE81273.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
          Length = 830

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 389/762 (51%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI+ AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILFAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAISLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++  P+ SIE++LE + GPDFPTGG ++   E I  +Y  GRG  ++R
Sbjct: 185 HNLGELIEATLLVLSKPDASIEEILEVMPGPDFPTGG-LICGSEGIRSTYYTGRGKIKLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  +EE   +    I++TE+PY V KSRLIE+IA+L+  K +  + D+RDES +D   V
Sbjct: 244 ARLHIEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGIHDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR EV+
Sbjct: 304 VLELKKGESSEIVINRLYKFTDVQVTFGANMLALDK-NLPRTMNIHRMISAWIRHRTEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +D+++  IRN D  +         F  TE Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCLDDLVRTIRNSDSKEHAKHQLIENFGFTEQQSV 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +I+ E D L+ +      +L       + I  E+++++++    
Sbjct: 423 AILELRLYQLTGLESEKIQKEYDELINKIAYYKRVLADEGLVKDIIRNELQDLQKLHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRTT      AD     + +I  EP+ + IS   +++ +                
Sbjct: 483 -----RRTTIE--FDADDVRDIEDIITNEPVIITISGDDYVKRMPIKVFREQKRGGHGVS 535

Query: 550 SLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--- 597
              +            A T D +L+ +  G+ Y L    L  G    +   ++  L    
Sbjct: 536 GFDMKKGSDFLKSVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +++   L + + +G    V         +KG   L++   +++   V
Sbjct: 596 PGEQLAAVLNIKNFENAGFLFLATKQGVVKKVSLDAFSNPRKKGIRALEIDEGDELIAAV 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           ++T +   V +       + F  D++  M R  +GVR  S K+     V C  + +  + 
Sbjct: 656 RITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVVACQIVKDDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RGGVG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERNGDVLGA 757



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 5/158 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           ++++L +  G A   P   +         ++ +   N    +V   +      +LVV   
Sbjct: 662 EKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVVACQIVKDDQSVLVVCDN 721

Query: 621 GNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G     +  +     R G       +   + + +  +     D + ++    + +  ++ 
Sbjct: 722 GFGKRSQVEDFRETNRGGVGVRSILINERNGDVLGAISVTDHDSILLMSAQGQAIRINMQ 781

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
            +  M R  +GVRL   KDG     +      G   + 
Sbjct: 782 DVRVMGRSTQGVRLVLVKDGDTLVAMEKLSLNGEETLS 819


>gi|317180420|dbj|BAJ58206.1| DNA gyrase subunit A [Helicobacter pylori F32]
          Length = 828

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/767 (33%), Positives = 415/767 (54%), Gaps = 31/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +++    +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
           KE FS       RRT   E   A +    + +I  EP+ V +S +G+             
Sbjct: 478 KEQFSSP-----RRTEIQE---AYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  + +  E D ++    A+T D +L ++  G+ Y L    +        G+AI  
Sbjct: 530 RGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEE 648
           LI L  ++ I+       +     L   +  G       SE  +N    G   + +   +
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGD 649

Query: 649 KMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++     V  D  H+ +       + F ++ + E+ R  +GV      +           
Sbjct: 650 ELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVREIGRTTRGVIGIRLNEDDFVVGAVVIS 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +G   +  +     +           RGG G +  K   ++G  +S
Sbjct: 710 DDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 7/135 (5%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G     P  ++         +  +     +  +    + D   KLL VS  G        
Sbjct: 671 GIFIKFPLEDVREIGRTTRGVIGIRLNEDDFVVGAVVISDDGNKLLSVSENGLGKQTLAE 730

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SR 683
                +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI  I E   R
Sbjct: 731 AYREQSRGGKGIIGMKLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGR 790

Query: 684 -GKGVRLQSYKDGGI 697
              GV+L    D  +
Sbjct: 791 NTSGVKLIDTADKVV 805


>gi|99082272|ref|YP_614426.1| DNA topoisomerase IV subunit A [Ruegeria sp. TM1040]
 gi|99038552|gb|ABF65164.1| DNA topoisomerase IV subunit A [Ruegeria sp. TM1040]
          Length = 782

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/781 (49%), Positives = 519/781 (66%), Gaps = 37/781 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           VD+ ++        ++   LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AMS
Sbjct: 5   VDDPTSPEMPANGELRE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMS 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 64  RLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNID 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT +AE +L+G+ EDAVDFRD Y+    EP V P+ FPN+LANG SG
Sbjct: 124 GDNPAASRYTEARMTFIAEAMLEGLGEDAVDFRDNYDGRLQEPSVLPATFPNILANGASG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A + LI  P  + + LL+Y+ GPDFPTGG IVE +E+I ++
Sbjct: 184 IAVGMATNIPPHNISELIDACVHLIKAPNAADDTLLQYVPGPDFPTGGTIVEPKENIAQA 243

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG FR+RA+  +E++GRG W +VVTEIPYQVQKS+LIEKIAELI  K++P+L D+R
Sbjct: 244 YRTGRGSFRLRAKHEIEDLGRGQWQVVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVR 303

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESAED+RI+L PK++++DP++LM  +   SD+E RF LNMNVL  G  P+V  +  +L+
Sbjct: 304 DESAEDIRIILEPKSKNVDPEVLMGLMHRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLR 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            +L HRR+VL RRS  RM  ID R+E+L G +IA+LN+D +I IIR ++ PK  ++    
Sbjct: 364 AFLDHRRDVLQRRSRHRMAKIDHRLEVLDGFIIAFLNLDRVIDIIRYDEDPKAALMRENW 423

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L+E Q +AILN+RLRSLRKLEE ++  E D L  E+  
Sbjct: 424 DREHPRAFTEAEYVTPAAGDGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAG 483

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL S + QW +I  ++RE K+ F K+ + G RRT F E +   +    +AMI++EPI
Sbjct: 484 LVELLGSEELQWKKITEQLRETKKQFGKNYEGGARRTQFAE-AGEIEDVPLEAMIDREPI 542

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+  ++G+ YTL A NL
Sbjct: 543 TVVCSQMGWIRAMTGHIDLSRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANL 602

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L++DL +  +IV  F+++   +LLV S  GN F+  E +I+A TR GK 
Sbjct: 603 PGGRGMGEPVRLMVDLPNEVEIVDLFIHNPEGRLLVASDAGNGFVCAEKDIVAQTRGGKQ 662

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------- 693
            L V  +E+ K+ + V GDHVAVV EN K L+F+I+++PE++RGKGVRLQ Y        
Sbjct: 663 VLNVKDDERAKICIPVAGDHVAVVSENGKFLVFAIEEMPELTRGKGVRLQKYNMARGRQG 722

Query: 694 ----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               DGG++DV  F   EGL W    G    R E DL  WLGKR G+G   P GFP+  K
Sbjct: 723 ALELDGGLADVTTFNWDEGLHW--EMGGGKIRHETDLTQWLGKRAGIGKRPPYGFPKDYK 780

Query: 750 F 750
           F
Sbjct: 781 F 781


>gi|302383090|ref|YP_003818913.1| DNA topoisomerase IV subunit alpha [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193718|gb|ADL01290.1| DNA topoisomerase IV, A subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 733

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/738 (50%), Positives = 509/738 (68%), Gaps = 11/738 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +       +    +  AL  RYLAYALSTI  RA+PD+RDGFKPVHRRI++AM +M L+ 
Sbjct: 5   TPPPEGGRIVDEPMGEALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRLNP 64

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            AA +K A++VGEV+G  HPHGD S+YD+LVRLAQ F QRYPL+ GQGNFGNIDGD+AAA
Sbjct: 65  QAAARKCAKVVGEVMGGYHPHGDASIYDALVRLAQDFAQRYPLVDGQGNFGNIDGDNAAA 124

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE ++T  + L+++G+D+D+VDFR TY+++D EP V P+ FPNLLANG+SGIAVGMA
Sbjct: 125 MRYTECKLTAASVLLMEGIDQDSVDFRPTYDDQDEEPTVLPAGFPNLLANGSSGIAVGMA 184

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HNV E+ +A LAL+D PE +  +L E + GPDFPTGG+ VE   SI+++Y  GRG
Sbjct: 185 TSIPPHNVGELIDACLALLDRPETTTAELAEIVPGPDFPTGGVAVEGHASILDAYETGRG 244

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           G R+RARW  E + RG + IV+TE+PYQVQKS+LIE +AELI  K+ PLL D+RDESAED
Sbjct: 245 GVRLRARWEREPLERGGYQIVITEVPYQVQKSKLIEALAELIEQKKAPLLGDVRDESAED 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+ PK+R++D D LMES+F LSD+E RFP+NMNVL     P+VM L   L+ +L HR
Sbjct: 305 IRVVIDPKSRNIDADSLMESLFRLSDLEVRFPINMNVLDATGTPRVMGLKACLQAFLDHR 364

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           REVL RRS++R++ +++R+ +L+GL I +LN+DE+I I+R E++PK V+++RF L+E Q 
Sbjct: 365 REVLNRRSAWRIERVEKRLHLLEGLRIVFLNLDEVIRIVREEEQPKAVLIARFGLSETQA 424

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           D IL+ RLR L ++EE  I++E   L  E   + SL +S  +QW +I  E+   ++    
Sbjct: 425 DFILDTRLRQLARIEEMTIENEYKALSEELASLQSLTSSPAKQWKKIGQELAATRKALIS 484

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RRTT  E   A      +A I +E ITV++S RGWIR++K    D S L FKEG
Sbjct: 485 P-----RRTTIAEAVDASAFVPAEAFIPREAITVILSERGWIRAVKGKVEDPSELKFKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+L   + A TTD++L+ ++DG+ +T+ A  L SGRGHGE ++L+++L  +  IV    +
Sbjct: 540 DALGFLVPAFTTDKLLVAASDGRVFTVGADKLASGRGHGEPLRLMVELEESAGIVAVLAH 599

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
               KLL+ S  G  FI  E E++A  R GK  L     + +   ++VTGDHV  +GEN 
Sbjct: 600 QPGAKLLIASKAGYGFIAPEDELLAQKRGGKQVLN---GD-LLAAIRVTGDHVVTIGENL 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           K LIF  D++PEM RGKGV+LQS+K GG++D+  F    G  W+D  GR   R+  D   
Sbjct: 656 KTLIFKADELPEMGRGKGVKLQSFKQGGLTDIALFDGAHGPEWVDGGGR--RRNWPDWKD 713

Query: 729 WLGKRGGVGSLVPKGFPR 746
           WLGKR G G + P+G  +
Sbjct: 714 WLGKRAGAGRMGPRGLRK 731


>gi|303234487|ref|ZP_07321125.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4]
 gi|302494442|gb|EFL54210.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4]
          Length = 806

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/748 (34%), Positives = 402/748 (53%), Gaps = 15/748 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K   L+  +E  YL Y++S I  RA+PD+RDG KPVHRRII+ M + GL     + KS
Sbjct: 7   NIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD ++YD++VRLAQ F  RYPL+ GQGNFG+IDGD AAA RYTE R
Sbjct: 67  ARLVGEVMGKYHPHGDIAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++  HN
Sbjct: 127 MDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +A IDNP I+IE+L++YI  PDFPTGG I    E +  +Y  GRG  R+RA 
Sbjct: 187 LGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNI-MGLEEVKNAYTTGRGKVRLRAE 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G + I+VTEIPYQV KS LI+KIA+L+  K+I  + D+RDES      ++  
Sbjct: 246 ARIEESK-GRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P++++ +++  + M+T F +    L    VP+V+ L  ++  +L H+  V+ RR
Sbjct: 305 TKRDANPNIVLNNLYKYTQMQTTFGIINLALV-NGVPKVLTLKQLIDHYLVHQEIVVRRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVDAILNL 434
           + F +     R+ I++GLL A  NIDEII IIR         ++ RF  +E Q  AIL++
Sbjct: 364 TQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMERFGFSEIQAQAILDM 423

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L+ LE+ ++++E D L A  EK+  +LN+       I  E+ E++  ++       
Sbjct: 424 RLKRLQGLEKEKLQNEFDELSALIEKLTEILNNRHMLLEIIKDELSEIRTKYADDRRTKI 483

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            R                 +       +   +    +        ++A+  K+GD +K  
Sbjct: 484 LRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGMKDGDFIKDM 543

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAFVYD--- 609
               T   +L  +  GK Y+L A  +              LI ++ ++++      D   
Sbjct: 544 FATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADENVTQVLALDKEK 603

Query: 610 -STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGEN 667
            +   ++ ++ KG       S      + G   +K    +++  V  V   + V +V + 
Sbjct: 604 ENDQFIIFITKKGKVKKTSLSLYENIRKTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKK 663

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRSYNRSEND 725
              L F++DQ+ ++SR   GV+  +       +VI F  + +       +   Y +    
Sbjct: 664 GMSLQFNVDQLRDLSRNAIGVKAITLNKDD--EVISFDLVKDNEFLAVISENGYGKKTEL 721

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RGG G    K   ++G    +
Sbjct: 722 SNYTTQNRGGKGIRTYKIAKKTGDVACA 749



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/458 (11%), Positives = 140/458 (30%), Gaps = 20/458 (4%)

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             ++   + +Q    R   +        RI ++E +         I+   +    D    
Sbjct: 346 KQLIDHYLVHQEIVVRRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEK 405

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +   F  S+++ +  L+M +  +  + +    +   +      +      +   +  I +
Sbjct: 406 LMERFGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTEILNNRHMLLEIIK 465

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE- 444
                     A     +I+    + +  + +      +T      I  +   + +     
Sbjct: 466 DELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRG 525

Query: 445 ----YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                 +  +  + + +     +  +            ++  +   +  T  G       
Sbjct: 526 GRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLI 585

Query: 501 EVSRADKATLQ---QAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
           ++   +  T         E +   + I+ +G ++              + A+ F EGD L
Sbjct: 586 QIDADENVTQVLALDKEKENDQFIIFITKKGKVKKTSLSLYENIRKTGIIAIKFDEGDEL 645

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                    + +++++  G +      + L            I LN + ++++  +    
Sbjct: 646 IDVKLVEKNEEVIIVTKKGMSLQFNV-DQLRDLSRNAIGVKAITLNKDDEVISFDLVKDN 704

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGEN 667
             L V+S  G     E S      R GK      +   + +          D + ++ + 
Sbjct: 705 EFLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAKKTGDVACAKALKKEDEILLISKQ 764

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++    + I  +SR   GV L++   G  + V   K
Sbjct: 765 AEVIRIKAEGISTLSRSTSGVLLKNTDKGEDAIVAVAK 802


>gi|288958233|ref|YP_003448574.1| DNA gyrase subunit A [Azospirillum sp. B510]
 gi|288910541|dbj|BAI72030.1| DNA gyrase subunit A [Azospirillum sp. B510]
          Length = 927

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/839 (30%), Positives = 396/839 (47%), Gaps = 93/839 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN+      ++  +++   + + YL YA+S I  RA+PD+RDG KPVHRRI++AM E G
Sbjct: 1   MSNTPLPPASDIAPINIEDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKEGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D    +KKSARIVG+V+GK HPHGD ++YD++VR+AQ F  R PLI GQGNFG++DGD 
Sbjct: 61  YDSTKPYKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSMRLPLIDGQGNFGSMDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ + AE +L  +D+D +DF+ +Y++   EP V P++FPNLL NG  GIAV
Sbjct: 121 PAAMRYTEARLAKAAEALLDDIDKDTIDFQASYDDSGREPTVVPARFPNLLVNGAGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +A  A IDNP++++++L+E++ GPDFPTGG ++  R     + + 
Sbjct: 181 GMATNIPTHNLGEVIDACCAYIDNPDVTLDELMEHVPGPDFPTGG-LILGRSGSRAALQT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+   EEV +    I+ TEIPYQV K++L+E+I E++  K I  + D+RDES
Sbjct: 240 GRGSIILRAKTHFEEVRKDRTAIIATEIPYQVNKAKLMERIGEVVNDKTIEGIADLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   PD+++  +F  + ++T F +NM  L+ G  P++M L  ++  ++
Sbjct: 300 DRDGVRVVIELKRDAVPDVVLAQLFRHTQLQTSFGVNMLALN-GGRPELMNLLDVITAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---------PKPV 416
             R +V+ RR+ F +     R   L GL +A  N+D +I +IR+             +  
Sbjct: 359 RFREQVITRRTEFLLGKARERAHTLVGLAVAVANLDAMIGLIRSAPDPVWAREEMMNREW 418

Query: 417 MVSRFS--------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
            V                        L+E Q  AIL+LRL  L  LE  +I +EL ++  
Sbjct: 419 PVHDVGPLIELIDEPGRGVSDQGTYRLSEVQARAILDLRLHRLTGLERDKIGAELKDVTD 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +     + L +  +    +  E+ E+KE F        +   F              +  
Sbjct: 479 QIADFLATLANRPKLMGILRDELVEMKERFGTPRRTEIQDLEFEADIEDLIQREDMVVTV 538

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            +   V        R+ K      + +  K  D++     A+T   +LL S  G  Y L 
Sbjct: 539 SQSGYVKRVPLSTYRAQKRGGKGRAGMSMKAEDAVSDLFVANTHTPLLLFSNRGMVYKLK 598

Query: 577 AGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEE 628
              L   + +  G+A   L+ L   + I T               ++  +SKGN      
Sbjct: 599 VYRLPLGNPQARGKAFVNLLPLIDGETITTVLPLPEDEAAWADLHVVFATSKGNVRRNRM 658

Query: 629 SEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRG- 684
           S+       G   +K+    E++  V   +  D + +     K + F +D +     R  
Sbjct: 659 SDFANIRSNGLIAMKLEEEGERLIGVHTCSETDDILLATRGGKCIRFPVDDVRVFAGRTS 718

Query: 685 KGVRLQSYKDGGISDVIC-----------------FKICEGL------------------ 709
            GVR     DG     +                   K  EGL                  
Sbjct: 719 TGVRGIKLADGDEVVSLSILAHVDATPEERAAFFKMKRDEGLEMEGEAAPEADEVPTDSV 778

Query: 710 ---------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                            +  + R Y +  +        RGG G    +   R+G  +++
Sbjct: 779 TLTQERYEELKQKEQYILTVSDRGYGKRSSSYEYRTAGRGGQGIWNMEMGERNGSIVAA 837



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 6/106 (5%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGE 666
              +L VS +G        E     R G+    +   E+   +     V  +H V +V  
Sbjct: 792 EQYILTVSDRGYGKRSSSYEYRTAGRGGQGIWNMEMGERNGSIVAAFPVESNHQVMMVTN 851

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLT 710
             +++   +  +    R   GV L     D  +  V      +G T
Sbjct: 852 GGQVIRMPLHDVRVAGRKTLGVTLFRVGADERVVSVATIAEEDGET 897



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                IL +S  G      +    +    G+ I  +     N  IV AF  +S  ++++V
Sbjct: 790 QKEQYILTVSDRGYGKRSSSYEYRTAGRGGQGIWNMEMGERNGSIVAAFPVESNHQVMMV 849

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
           ++ G    +   ++    RK  G T  +V ++E++  V  +  + 
Sbjct: 850 TNGGQVIRMPLHDVRVAGRKTLGVTLFRVGADERVVSVATIAEED 894


>gi|108563111|ref|YP_627427.1| DNA gyrase subunit A [Helicobacter pylori HPAG1]
 gi|107836884|gb|ABF84753.1| DNA gyrase subunit A [Helicobacter pylori HPAG1]
          Length = 827

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/767 (34%), Positives = 416/767 (54%), Gaps = 31/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDHLVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A   +++NP   ++++LE++ GPDFPTGG I+  +  I+ESY+ 
Sbjct: 181 GMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGG-IIYGKAGIIESYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RFS
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFS 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S ++    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEERLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE FS       RRT   E   + +    + +I  EP+ V IS +G+++           
Sbjct: 478 KEQFSSP-----RRTEIQE---SYENIDIEDLIANEPMVVSISYKGYVKRVDLKAYEKQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  +    E D ++    A+T D +L ++  G+ Y L    +        G+AI  
Sbjct: 530 RGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEE 648
           LI L  ++ I+       +     L   + KG       SE  +N    G   + +   +
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKKGVVKRTNLSEFGSNRSYSGIRAIVLDEGD 649

Query: 649 KMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++     V  +  H+ +       + F ++ + E+ R  +GV+     +           
Sbjct: 650 ELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVKGIRLAENDFVVGAVVIS 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +G   +  +     +           RGG G +  +   ++G  +S
Sbjct: 710 DDGNKLLSVSENGLGKQTLAEAYREQNRGGKGIIGMRLTQKTGNLVS 756



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 6/152 (3%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G     P  ++         ++ +    ++  +    + D   KLL VS  G
Sbjct: 663 HLLIASHLGIFIKFPLEDVREIGRTTRGVKGIRLAENDFVVGAVVISDDGNKLLSVSENG 722

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSID 676
                         R GK  + +   +K   +  V+ V  +   + ++  + K++  SI 
Sbjct: 723 LGKQTLAEAYREQNRGGKGIIGMRLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIK 782

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            I E  R   GV+L +  D  +    C K  E
Sbjct: 783 DIRETGRNASGVKLINTADKVMYVNSCPKEEE 814


>gi|316934206|ref|YP_004109188.1| DNA gyrase subunit A [Rhodopseudomonas palustris DX-1]
 gi|315601920|gb|ADU44455.1| DNA gyrase, A subunit [Rhodopseudomonas palustris DX-1]
          Length = 913

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/858 (31%), Positives = 407/858 (47%), Gaps = 115/858 (13%)

Query: 1   MGV-DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M   D+      L   +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++
Sbjct: 1   MSDKDDEKPGEPLAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            M E G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG
Sbjct: 61  GMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD  AA RYTE+R+T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG
Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +A +ALID+P ++I+ L + + GPDFPTGGII+  R  I
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACVALIDDPALTIDDLNKIVPGPDFPTGGIIL-GRSGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y+ GRG   +R +  +E V +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + 
Sbjct: 240 RSAYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  D   V+    R   P++++  ++  + ++T F  NM  L  G  PQ+M L  
Sbjct: 300 DLRDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVAL-EGGRPQLMNLKD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L  ++A R +V+ RR+ F +     R  IL GL IA  NIDEII +IRN   P     +
Sbjct: 359 LLTVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARET 418

Query: 420 RF-----------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                           L+  Q  AIL+LRL+ L  L   +I  E
Sbjct: 419 LMSRDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISDE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           LD L  E      +L S  +    +  E+  VK  F+       R+T   E         
Sbjct: 479 LDKLAVEIADYLEILRSRARVQTIVKDELGAVKAEFATP-----RKTVIVEQEGE---VE 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I++E + V +S+ G+++          +      S +  +E D +     A T   
Sbjct: 531 DEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTP 590

Query: 563 ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KL 614
           +L  S+ G+ Y      L      G G+A+  ++ L   + I T               +
Sbjct: 591 VLFFSSRGQVYKEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDV 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  ++ GN    + S+ +   R G   +K+   E +  V   T  D V +     + + F
Sbjct: 651 MFATTGGNVRRNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRF 710

Query: 674 SIDQIPEM-SRGK-GVRLQSYKDGGISDVIC----------------------------- 702
            +  +     R   GVR  +   G     +                              
Sbjct: 711 PVPDVRVFSGRTSMGVRGIALSSGDKVISLSILRHFEATPAERSTYLKQSGAIRRAATGE 770

Query: 703 ---------FKICEGLT------------------WIDSAGRSYNRSENDLLGWLGKRGG 735
                     +  EG T                   +  +   Y +  +        RGG
Sbjct: 771 ESEPIETPEVEAEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGG 830

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +      R+GK ++S
Sbjct: 831 KGIVAMSVNGRNGKLVAS 848



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSS-EEKMKLVVKVTG-DHVAVVG 665
           S   +L +S  G        E     R GK    + V+    K+     V   D + +V 
Sbjct: 802 SEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNGRNGKLVASFPVEDSDQIMLVT 861

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +N +L+   ++ I    R  +GV + +  D      +
Sbjct: 862 DNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSV 898



 Score = 42.1 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L +S +G      +    +    G+ I  +     N  +V +F  + + ++++V+  
Sbjct: 804 QFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNGRNGKLVASFPVEDSDQIMLVTDN 863

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
           G         I    R   G      + +EK+  V ++    
Sbjct: 864 GQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVERIPETD 905


>gi|254464900|ref|ZP_05078311.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium Y4I]
 gi|206685808|gb|EDZ46290.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium Y4I]
          Length = 782

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/777 (49%), Positives = 515/777 (66%), Gaps = 36/777 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +  +  E+      LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM+ + L
Sbjct: 8   PDMPSAPEQGEILEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ 
Sbjct: 68  SSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNP 127

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEARMT VAE +L G++E+AVDFRD Y+   +EP V P+ FPN+LANG +GIAVG
Sbjct: 128 AASRYTEARMTFVAEAMLDGLNENAVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVG 187

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +A L LI  P+   + LL Y+ GPDFPTGGIIVE +E+I ++Y  G
Sbjct: 188 MATNIPPHNIAELIDACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYSTG 247

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG FR+R +  VE++GRG W IVVTEIPYQVQKS+LIEKIAELI  K++P+L D+RDESA
Sbjct: 248 RGSFRLRCKHEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDESA 307

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D+RIVL PK++++DP++LM  +F  SD+E RF LNMNVL  G  P+V  +  +L+ +L 
Sbjct: 308 DDIRIVLEPKSKNVDPEVLMNMMFRNSDLEIRFSLNMNVLIDGVTPKVCSMKEVLRAFLD 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--------------- 411
           HRR+VL RRS  RM+ ID R+E+L+G +IA+LN+D +I IIR ++               
Sbjct: 368 HRRDVLQRRSRHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAALIREDWSKDH 427

Query: 412 -------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                             LTE Q +AILN+RLRSLRKLEE ++  E D L  E+  +  L
Sbjct: 428 PRALTEADYITPARGVGELTEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLVEL 487

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L S + QW++I+ +++E K+ F K  + G RRT F E   A +    +AMI++EPITVV 
Sbjct: 488 LASEELQWSRISEQLKETKKQFGKDYEGGARRTLFAEAGEA-EDVPLEAMIDREPITVVC 546

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           S  GWIR++  H      L FK+GD+ +   HA TTD++L+  ++G+ YTL A NL  GR
Sbjct: 547 SQMGWIRAMTGHIDLSRELKFKDGDAPRFIFHAETTDKLLVFGSNGRFYTLSAANLPGGR 606

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G GE ++L++DL +  +IV   +++   +LLV S  GN FI  E EI+A TR GK  L V
Sbjct: 607 GMGEPLRLMVDLPNEAEIVDLLIHNPEGRLLVASDAGNGFICAEKEIVAQTRSGKQVLNV 666

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK----------- 693
             +E+ K+ + V GDHVAVV EN K L+F+++++PE++RGKGVRLQ Y            
Sbjct: 667 KDDERAKVCIPVEGDHVAVVSENGKFLVFAVEEMPELTRGKGVRLQKYNMARGKQGSLEL 726

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DGG+SD+  F+  EGL W    G    R   DL  WLGKR  VG   P GFPRS KF
Sbjct: 727 DGGLSDITTFRWDEGLKW--EMGGGKTRHAADLSEWLGKRASVGKRPPHGFPRSYKF 781


>gi|206148715|gb|ACI05548.1| GyrA [Mycobacterium indicus pranii]
          Length = 829

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/775 (29%), Positives = 386/775 (49%), Gaps = 36/775 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM +
Sbjct: 3   DTTLPPGDDSVDRIQPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYD 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   
Sbjct: 63  SGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGN 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GI
Sbjct: 123 DPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGI 182

Query: 184 AVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+ EA          + E ++  + E + GPDFPT G ++   + I
Sbjct: 183 AVGMATNIPPHNLRELAEAVYWCLDNHEADEEATLTAVCERVKGPDFPTHG-LIVGSQGI 241

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + 
Sbjct: 242 HDAYTTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGIS 301

Query: 300 DIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + LD
Sbjct: 302 NIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLRLD 360

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KP 415
            +++ ++AH+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     + 
Sbjct: 361 QMIRHYVAHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 420

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +
Sbjct: 421 GLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRRIV 480

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+ E+ +          RRT       AD     + +I +E + V I+  G+ +    
Sbjct: 481 HDELSEIVDKHGDE-----RRTRII---AADGDVNDEDLIAREDVVVTITETGYAKRTKT 532

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRG 585
                 K     +     K+ D ++      T D IL  +T G+ Y   A  L       
Sbjct: 533 DLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTA 592

Query: 586 HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ +  L+     + I        Y+    L++ +  G     + ++  +N   G   +
Sbjct: 593 RGQHVANLLAFQPEERIAQVIQIRGYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAI 652

Query: 643 KVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGIS 698
            +   +++   V  + D  + +V  N + + FS     +  M R   GV+   +      
Sbjct: 653 NLRDNDELVGAVLCSSDEDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDYL 712

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 713 LSLNV-VREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 766



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 75/200 (37%), Gaps = 12/200 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ +  G ++  K    D +        + ++ D L  A+   + + +LL+S 
Sbjct: 618 YEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSSDEDLLLVSA 677

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           +G++    A +      G   +    +  N +  +++  V      LLV +S G A    
Sbjct: 678 NGQSIRFSATDEALRPMGRATSGVQGMRFNADDYLLSLNVVREGTYLLVATSGGYAKRTA 737

Query: 628 ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
             E     R GK  L V       ++   + V  D  +  +     ++  +  Q+ +  R
Sbjct: 738 IEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGR 797

Query: 684 -GKGVRLQSYKDGGISDVIC 702
             KGVRL +  +      I 
Sbjct: 798 QTKGVRLMNLGEENTLLAIA 817



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 2/131 (1%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F   D L           +L+ ++ G A              
Sbjct: 688 DEALRPMGRATSGVQGMRFNADDYLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRG 747

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
           G+ +  ++       +V A + D   +L  ++S G        ++    R  KG   + +
Sbjct: 748 GKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNL 807

Query: 645 SSEEKMKLVVK 655
             E  +  + +
Sbjct: 808 GEENTLLAIAR 818


>gi|161506640|ref|YP_001576588.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
 gi|160347629|gb|ABX26303.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
          Length = 827

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/763 (29%), Positives = 388/763 (50%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAAEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTGGII+        +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYR-AYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA   +E    G   I+V+EIPY V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +     P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVD-GAPHYLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           +++V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIR+          ++SRF L 
Sbjct: 360 QKDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSH 536
            F       +RRT     +    +   + +IEK+ I + +++  +I+ +           
Sbjct: 480 RFGD-----KRRTEIG--ASEVVSIEDEDLIEKQNILLTVTHNSYIKRMPIQEFKTQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +       +   +  L+
Sbjct: 533 GKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNLL 592

Query: 595 DLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T            L  ++  G       SE       G   L +   +++ 
Sbjct: 593 QLEKGEKVQTVINVPEGADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELS 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+   G    ++G +    + F+ + +  M R   GVR  + +D            +  
Sbjct: 653 NVLTTDGKQNILIGTHLGYAVTFNENDVRAMGRTAAGVRGINLRDHDYVVGSGVLDADD- 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +        +  RGG G        ++G    
Sbjct: 712 QVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  ++GD L   L       IL+ +  G A T    ++ +
Sbjct: 623 TVKRTHVSEFSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRA 682

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                 A    I+L  +  +V + V D+  ++LV+S KG       +E     R GK   
Sbjct: 683 MGRTA-AGVRGINLRDHDYVVGSGVLDADDQVLVISEKGYGKRTPAAEYPVKGRGGKGIK 741

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     ++V   G  + V+  +  ++ F    + +  R   GVRL    D   
Sbjct: 742 TANITEKNGPLAGVIVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQ 801

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 802 VASLTIVPSE 811


>gi|328468765|gb|EGF39736.1| DNA gyrase subunit A [Lactobacillus helveticus MTCC 5463]
          Length = 827

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/763 (30%), Positives = 388/763 (50%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTGGII+        +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYR-AYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA   +E    G   I+V+EIPY V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +     P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVD-GAPHYLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           +++V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIR+          ++SRF L 
Sbjct: 360 QKDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSH 536
            F       +RRT     +    +   + +IEK+ I + +++ G+I+ +           
Sbjct: 480 RFGD-----KRRTEIG--ASEVISIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +       +   +  L+
Sbjct: 533 GKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNLL 592

Query: 595 DLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T            L  ++  G       SE       G   L +   +++ 
Sbjct: 593 QLEKGEKVQTVINVPEGADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELS 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+   G    ++G +    + F+ + +  M R   GVR  + +D            +  
Sbjct: 653 NVLTTDGKQNILIGTHLGYAVTFNENDVRAMGRTAAGVRGINLRDHDYVVGSGVLDADD- 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +   Y +        +  RGG G        ++G    
Sbjct: 712 QVLVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  ++GD L   L       IL+ +  G A T    ++ +
Sbjct: 623 TVKRTHVSEFSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRA 682

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                 A    I+L  +  +V + V D+  ++LV+S  G       +E     R GK   
Sbjct: 683 MGRTA-AGVRGINLRDHDYVVGSGVLDADDQVLVISENGYGKRTPAAEYPVKGRGGKGIK 741

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     ++V   G  + V+  +  ++ F    + +  R   GVRL    D   
Sbjct: 742 TANITEKNGPLAGVIVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQ 801

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 802 VASLTIVPSE 811


>gi|256374167|ref|YP_003097827.1| DNA gyrase subunit A [Actinosynnema mirum DSM 43827]
 gi|255918470|gb|ACU33981.1| DNA gyrase, A subunit [Actinosynnema mirum DSM 43827]
          Length = 840

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/777 (29%), Positives = 391/777 (50%), Gaps = 40/777 (5%)

Query: 6   ISNSNTLV----EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +S +         +  +   L+  ++  Y+ YA+S I  RA+PD+RDG KPVH R++++M
Sbjct: 1   MSETTLPPIGGGSDRTEPRDLQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHVRVLYSM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            +       ++ K AR+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+ 
Sbjct: 61  FDSRFLPERSYNKCARVVGDVMGNYHPHGDSAIYDALVRLAQPWAMRYPLIDGQGNFGSQ 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D AAA RYTE R+T +A  +L  ++ED VDFRD Y+    EP V PS+ PNLL NG+S
Sbjct: 121 GNDPAAAMRYTECRLTPLAMRMLADIEEDTVDFRDNYDGRIQEPTVLPSRVPNLLINGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN++E+ E  +  +DNPE S E+    ++  I GPDFPT G I+   +
Sbjct: 181 GIAVGMATNIPPHNLREVAEGVVWALDNPEASDEETLEAMIARIKGPDFPTYGQIL-GTQ 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++YR GRG  ++RA   ++E  +G   +VV+E+PYQV    L+E IA L+  ++I  
Sbjct: 240 GIEDAYRTGRGSVKMRAVVEMDEDAKGRTILVVSELPYQVNPDNLVENIASLVRDQKING 299

Query: 298 LEDIRDESAEDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + +I DES       ++    R     +++ +++  + ++  F +NM  L    VP+ + 
Sbjct: 300 ISNIADESNRRSGMRIVVTVKRDAVAKVVLNNLYKHTQLQYSFGVNMLSLVD-GVPRTLR 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           LD +++ ++ H+ EV+ RR+ FR++  + R  + +GL+ A   +D +IA+IR  D  +  
Sbjct: 359 LDQMIRHYVKHQIEVIVRRTKFRLRKAEERAHVWRGLVKALDQLDAVIALIRRSDTTESA 418

Query: 417 MVSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                    + E Q +AIL ++LR L  LE  +I  +L  +  +   +  +L   ++Q  
Sbjct: 419 RSGLMELLSVDEVQSNAILEMQLRRLAALERQKIIDQLAEIELQIADLKDILAKPERQRA 478

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
            +  E+ E+ +          RRT              + +I  E + V I+  G+ +  
Sbjct: 479 IVRGELLEIVDKHGD-----DRRTKIVPFDGD---VSMEDLIAVEDVVVTITRTGYAKRT 530

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--G 583
                   K     +     K+ D ++      T D IL  +  G+ Y   A +L     
Sbjct: 531 KTDLYRAQKRGGKGVQGAQLKQDDIVQHFFVCSTHDWILFFTNKGRVYRTKAYDLPEASR 590

Query: 584 RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+    +++I        Y++   L++ +  G     + S+  +N   G  
Sbjct: 591 NARGQHVANLLAFQPDEEIAQVIQIKNYEAAPYLVLATRNGLVKKSKLSDFDSNRSGGLI 650

Query: 641 FLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGG 696
            + +  E+++   V    GD + +V ++ + + F      +  M R   GV+   +    
Sbjct: 651 GINLREEDELVGAVLTGEGDDLLLVSKDGQSIRFHSSDDVLRPMGRATSGVQGMRFNSDD 710

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +   + EGL  + +    Y +        +  RGG G L  +   R G+ + +
Sbjct: 711 ELLSMGV-VQEGLFVLVATDGGYAKRTPIEDYPVQGRGGKGVLTIQHDRRRGRLVGA 766



 Score = 81.4 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 12/228 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-------FKEGDSLKI 553
           +        +Q    E  P  V+ +  G ++  K    D +           +E + +  
Sbjct: 604 QPDEEIAQVIQIKNYEAAPYLVLATRNGLVKKSKLSDFDSNRSGGLIGINLREEDELVGA 663

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            L     D +L+           + ++L   G   +    +  N + ++++  V      
Sbjct: 664 VLTGEGDDLLLVSKDGQSIRFHSSDDVLRPMGRATSGVQGMRFNSDDELLSMGVVQEGLF 723

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVVKVT-GDHVAVVGENRK 669
           +LV +  G A      +     R GK  L +  +    ++   + V   D +  +     
Sbjct: 724 VLVATDGGYAKRTPIEDYPVQGRGGKGVLTIQHDRRRGRLVGALIVDVEDELYAITSAGG 783

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           ++  S  +I +  R  KGVRL +  +      +     E         
Sbjct: 784 VIRTSAKEIRKAGRQTKGVRLMNLGEKSTLIAVARNADEPADVSTGEE 831


>gi|118615925|ref|YP_904257.1| DNA gyrase subunit A [Mycobacterium ulcerans Agy99]
 gi|118568035|gb|ABL02786.1| DNA gyrase (subunit A) GyrA [Mycobacterium ulcerans Agy99]
          Length = 839

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/775 (29%), Positives = 386/775 (49%), Gaps = 36/775 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D +        + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM +
Sbjct: 3   DTMLPPGGEASDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYD 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   
Sbjct: 63  SGFRPDHSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGN 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GI
Sbjct: 123 DPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGI 182

Query: 184 AVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+ EA          + E ++  + + + GPDFPT G ++   + I
Sbjct: 183 AVGMATNIPPHNLRELAEAVFWCLENHDADEEATLAAVTDRVKGPDFPTSG-LIVGTQGI 241

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y+ GRG  R+R    +EE  RG   +V+TE+PYQV     I  IAE +   ++  + 
Sbjct: 242 SDAYKTGRGSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGIS 301

Query: 300 DIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + LD
Sbjct: 302 NIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLRLD 360

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KP 415
            +++ ++ H+ +V  RR+++R++  + R  IL+GL+ A   +DE+IA+IR        + 
Sbjct: 361 QMIRYYVEHQLDVTIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +
Sbjct: 421 GLIELLGIDEIQAQAILDMQLRRLAALERERIVDDLAKIEAEIADLEDILAKPERQRAIV 480

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+ E+ +          RRT       AD     + +I +E + V I+  G+ +    
Sbjct: 481 RDELAEIVDKHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKRTKT 532

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRG 585
                 K     +     K+ D ++      T D IL  +T G+ Y   A  L       
Sbjct: 533 DLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEALRTA 592

Query: 586 HGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ +  L+     + I        Y+    L++ +  G     + ++  +N   G   +
Sbjct: 593 RGQHVANLLAFQPEERIAQVIQIKSYEDAPYLVLATQNGVVKKSKLTDFDSNRSGGIVAI 652

Query: 643 KVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGIS 698
            +  E+++   V   + + + +V  N + + FS     +  M R   GV+   +      
Sbjct: 653 NLRGEDELVGAVLCSSEEDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDRL 712

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 713 LSLNV-VREGTYLLAATAGGYAKRTGIEEYPVQGRGGKGVLTIMYDRRRGRLVGA 766



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 12/208 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ +  G ++  K    D +        + +  D L  A+   + + +LL+S 
Sbjct: 618 YEDAPYLVLATQNGVVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSEEDLLLVSA 677

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           +G++    A +      G   +    +  N +  +++  V      LL  ++ G A    
Sbjct: 678 NGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNVVREGTYLLAATAGGYAKRTG 737

Query: 628 ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
             E     R GK  L +       ++   + V  D  +  +     ++  +  Q+ +  R
Sbjct: 738 IEEYPVQGRGGKGVLTIMYDRRRGRLVGALIVDDDSELYAITSGGGVIRTAARQVRKAGR 797

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLT 710
             KGVRL +  +G     I     E   
Sbjct: 798 QTKGVRLMNLGEGDTLLAIARNAEENAD 825


>gi|166154399|ref|YP_001654517.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
 gi|166155274|ref|YP_001653529.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335658|ref|ZP_07223902.1| DNA gyrase subunit A [Chlamydia trachomatis L2tet1]
 gi|165930387|emb|CAP03880.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
 gi|165931262|emb|CAP06834.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 836

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/762 (31%), Positives = 376/762 (49%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGG I+   E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDK-NLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR     +            +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRT              + +I  E + + IS   +++ +            +   
Sbjct: 483 -----RRTKIE--MDTGDVRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVT 535

Query: 550 SLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--- 597
              +            A T D +L+ +  G+ Y L    L  G    +   ++  L    
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        ++    L + + KG    V      +  +KG   L++   +++    
Sbjct: 596 PGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAAR 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  D++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RG VG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGA 757



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 53/154 (34%), Gaps = 5/154 (3%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
               A+  ++++L +  G A   P   +         ++ +   N    +V+  V     
Sbjct: 654 ARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G        +     R         +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGAISVTDCDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
           + +  ++  +  M R  +GVRL + ++G     +
Sbjct: 774 QAIRINMQDVRVMGRATQGVRLVNLREGDTLVAM 807


>gi|1346229|sp|P48369|GYRA_AERSA RecName: Full=DNA gyrase subunit A
 gi|1019146|gb|AAB41037.1| DNA gyrase [Aeromonas salmonicida]
          Length = 922

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/839 (30%), Positives = 389/839 (46%), Gaps = 102/839 (12%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G
Sbjct: 1   MSD----LAREITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VRLAQ F  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM +++  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMA +IP HN+ EI    LALI+N  ++I++L+ YI GPDFPTG  I+  R  IV++YR 
Sbjct: 177 GMAWNIPPHNLTEIVNGCLALIENGNLTIDELMTYITGPDFPTGA-IINGRAGIVQAYRT 235

Query: 246 GRGGFRVRARW--CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           GRG   VRA+    V++       I+V E+PYQV K+RLIEKIAEL+  K++  +  +RD
Sbjct: 236 GRGSVYVRAKAEVEVDDKTSRETIIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRD 295

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES +D   ++    R    ++++ +++  + ++T F +NM  L     P+VM L  IL  
Sbjct: 296 ESDKDACRIVIEIKRGESGEIVLNNLYKHTQLQTTFGINMVALD-NNQPKVMNLKDILDA 354

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------- 415
           +L HRREV+ RR+ F ++    R  IL+GL +A  NID II +IR+ D P          
Sbjct: 355 FLLHRREVVTRRTVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVAR 414

Query: 416 -----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
                                        +   ++ LTE Q  AIL+LRL  L  LE  +
Sbjct: 415 GWELGNVAAMLEKAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGK 474

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I  E  +LL    ++  +L S ++    I  E+  V+E +          ++        
Sbjct: 475 ILEEYQSLLDLIAELLFILASPERLMEVIRDELLAVREQYGDERPPEISASSAEINIEDL 534

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
                  +       V         + +      SA   KE + ++  L A+T D IL  
Sbjct: 535 ITPEDVVVTLSHQGYVKYQPITDYEAQRRGGRGKSATRIKEENFVERLLVANTHDTILCF 594

Query: 567 STDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           ST GK Y L    L        G  I  L+ L   + I        Y     +   ++ G
Sbjct: 595 STRGKVYWLKVYQLPEASRGARGRPIINLLPLEEGERITAILPVKEYADDKYVFFATADG 654

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI----- 675
                  S        G   + +   +++  V    G + + +  +  K++ F+      
Sbjct: 655 TVKKTSLSAFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSAAP 714

Query: 676 --------DQ-----------------------------------IPEMSRGK-GVRLQS 691
                   D                                    +  M R   GVR   
Sbjct: 715 MQPMLMSSDDVDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPMGRTAGGVRGIR 774

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             +G     +     EG   + +    Y +           RG  G    K     GK 
Sbjct: 775 LLNGDKVVSLIVPRGEGA-ILTATENGYGKGTALTEYPTKSRGTQGVRSIKVDE-DGKV 831



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 3/109 (2%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
           I L +   +V+  V      +L  +  G       +E    +R   G   +KV  + K+ 
Sbjct: 773 IRLLNGDKVVSLIVPRGEGAILTATENGYGKGTALTEYPTKSRGTQGVRSIKVDEDGKVS 832

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
           +      D + ++     L+   + ++  + R   GVRL    +     
Sbjct: 833 IDQVDDTDQIMLITNGGTLVRTRVSEVSIIGRNTGGVRLIRTGEDETVV 881


>gi|306834808|ref|ZP_07467872.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           accolens ATCC 49726]
 gi|304569336|gb|EFM44837.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           accolens ATCC 49726]
          Length = 851

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/773 (29%), Positives = 383/773 (49%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++N  + + +  + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDNNDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+  A   L++NP    + ++   +E + GPDFPT G ++   + I +
Sbjct: 181 GMATNIPPHNLNELASAIYWLLENPDADEDAALAACMERVKGPDFPTAG-LIVGDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+P+QV    LI  IAE +   +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVANGKIAGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ +++  S ++T F  NM  +    VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVD-GVPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           L  ++AH+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR            
Sbjct: 358 LSNYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + + Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   +  
Sbjct: 418 KELLDVDDIQADAILAMQLRRLAALERQKIVDELAEIEEEIADLKHILAHEERQRQIVHD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+  + E +        RRT       A      + +I +E + V I+  G+ +  K  +
Sbjct: 478 ELEAIVEKYGDE-----RRTEIL---PASGEVTDEDLIARENVVVTITATGYAKRTKVDT 529

Query: 538 V--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +     K+ D +K      T D IL  +  G+ Y L A  L        G
Sbjct: 530 YKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPESGRAARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + +G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +     V  GD + +  E  + + F+ D   +  M R   GV+   ++       
Sbjct: 650 NEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFRGDDQLLA 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   + +G   + +    Y +           RGG+G +  K  P+ GK + +
Sbjct: 710 MSV-VHDGEFLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGA 761



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 50/154 (32%), Gaps = 6/154 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           D ILL S  G+A    A +      G   A    +    +  ++   V      LLV +S
Sbjct: 665 DDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFRGDDQLLAMSVVHDGEFLLVATS 724

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI 675
            G        E     R G   +         K+   + +   D +  +     ++   +
Sbjct: 725 GGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGAISIDKDDEIFAITSAGGVIRTEV 784

Query: 676 DQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
           +QI   SR   GVRL    D      I   + E 
Sbjct: 785 NQIRPSSRATMGVRLVDLADDVELLAIDRNVEED 818


>gi|227502251|ref|ZP_03932300.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC
           49725]
 gi|227077075|gb|EEI15038.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC
           49725]
          Length = 851

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/773 (29%), Positives = 383/773 (49%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++N  + + +  + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDNNDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+  A   L++NP    + ++   +E + GPDFPT G ++   + I +
Sbjct: 181 GMATNIPPHNLNELASAIYWLLENPDADEDAALAACMERVKGPDFPTAG-LIVGDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+P+QV    LI  IAE +   +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVANGKIAGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ +++  S ++T F  NM  +    VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVD-GVPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           L  ++AH+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR            
Sbjct: 358 LSNYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + + Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   +  
Sbjct: 418 KELLDVDDIQADAILAMQLRRLAALERQKIVDELAEIEEEIADLKHILAHEERQRQIVHD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+  + E +        RRT       A      + +I +E + V I+  G+ +  K  +
Sbjct: 478 ELEAIVEKYGDE-----RRTEIL---PASGEVTDEDLIARENVVVTITATGYAKRTKVDT 529

Query: 538 V--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +     K+ D +K      T D IL  +  G+ Y L A  L        G
Sbjct: 530 YKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPESGRAARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + +G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +     V  GD + +  E  + + F+ D   +  M R   GV+   ++       
Sbjct: 650 NEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFRGDDQLLA 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   + +G   + +    Y +           RGG+G +  K  P+ GK + +
Sbjct: 710 MSV-VHDGEFLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGA 761



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 50/154 (32%), Gaps = 6/154 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           D ILL S  G+A    A +      G   A    +    +  ++   V      LLV +S
Sbjct: 665 DDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFRGDDQLLAMSVVHDGEFLLVATS 724

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI 675
            G        E     R G   +         K+   + +   D +  +     ++   +
Sbjct: 725 GGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGAISIDKDDEIFAITSAGGVIRTEV 784

Query: 676 DQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
           +QI   SR   GVRL    D      I   + E 
Sbjct: 785 NQIRPSSRATMGVRLVDLADDVELLAIDRNVEED 818


>gi|15604909|ref|NP_219693.1| DNA gyrase subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|255310989|ref|ZP_05353559.1| DNA gyrase subunit A [Chlamydia trachomatis 6276]
 gi|255317290|ref|ZP_05358536.1| DNA gyrase subunit A [Chlamydia trachomatis 6276s]
 gi|13627049|sp|O84192|GYRA_CHLTR RecName: Full=DNA gyrase subunit A
 gi|3328594|gb|AAC67781.1| DNA Gyrase Subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|296435704|gb|ADH17878.1| DNA gyrase subunit A [Chlamydia trachomatis G/9768]
 gi|296436628|gb|ADH18798.1| DNA gyrase subunit A [Chlamydia trachomatis G/11222]
 gi|297140063|gb|ADH96821.1| DNA gyrase subunit A [Chlamydia trachomatis G/9301]
 gi|297748319|gb|ADI50865.1| DNA gyrase subunit A [Chlamydia trachomatis D-EC]
 gi|297749199|gb|ADI51877.1| DNA gyrase subunit A [Chlamydia trachomatis D-LC]
          Length = 836

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/762 (32%), Positives = 377/762 (49%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGG I+   E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDK-NLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR     +            +E Q  
Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRT       A      + +I  E + + IS   +++ +            +   
Sbjct: 483 -----RRTRIE--MDAGDVRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVT 535

Query: 550 SLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--- 597
              +            A T D +L+ +  G+ Y L    L  G    +   ++  L    
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        ++    L + + KG    V      +  +KG   L++   +++    
Sbjct: 596 PGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAAR 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  D++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RG VG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGA 757



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 53/154 (34%), Gaps = 5/154 (3%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
               A+  ++++L +  G A   P   +         ++ +   N    +V+  V     
Sbjct: 654 ARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G        +     R         +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGAISVTDCDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
           + +  ++  +  M R  +GVRL + ++G     +
Sbjct: 774 QAIRINMQDVRVMGRATQGVRLVNLREGDTLVAM 807


>gi|76788911|ref|YP_327997.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|237804535|ref|YP_002888689.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76167441|gb|AAX50449.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|231272835|emb|CAX09744.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 836

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/762 (32%), Positives = 377/762 (49%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGG I+   E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDK-NLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR     +            +E Q  
Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRT       A      + +I  E + + IS   +++ +            +   
Sbjct: 483 -----RRTRIE--MDAGDVRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVT 535

Query: 550 SLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--- 597
              +            A T D +L+ +  G+ Y L    L  G    +   ++  L    
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERKAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        ++    L + + KG    V      +  +KG   L++   +++    
Sbjct: 596 PGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAAR 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  D++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RG VG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGA 757



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 53/154 (34%), Gaps = 5/154 (3%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
               A+  ++++L +  G A   P   +         ++ +   N    +V+  V     
Sbjct: 654 ARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G        +     R         +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGAISVTDCDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
           + +  ++  +  M R  +GVRL + ++G     +
Sbjct: 774 QAIRINMQDVRVMGRATQGVRLVNLREGDTLVAM 807


>gi|294054233|ref|YP_003547891.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221]
 gi|293613566|gb|ADE53721.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221]
          Length = 841

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/770 (31%), Positives = 390/770 (50%), Gaps = 35/770 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            DN S+SNT      +A S+   ++  Y+ Y++S I  RA+PD RDGFKPV RRI++AM 
Sbjct: 2   SDNPSDSNTPSHMRAQATSITDIMQTAYIDYSMSVIVSRALPDARDGFKPVQRRILYAML 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
             GL     F K A +VGEV+   HPHGD SVYD+LVRLAQ +V RYPLI  QGNFG+ID
Sbjct: 62  REGLLHNRPFDKCAGVVGEVLKNYHPHGDSSVYDTLVRLAQDWVMRYPLIVPQGNFGSID 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDS AAYRYTE ++  +AE  L+ +DED VDF   Y E  +EP V P+  PNLL NG++G
Sbjct: 122 GDSPAAYRYTECKLQAIAEDCLKDIDEDTVDFVPNYKESTTEPSVLPAALPNLLMNGSTG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGM T+IP HN+ EI +AA A+IDNP+I +++L+++I GPDFP GG  +  +  I   
Sbjct: 182 IAVGMTTNIPPHNLNEIIDAACAIIDNPKIELDELIQFIPGPDFPGGG-FIHGKSGIESY 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            + GRG  R R    V E   G   I+++ IPY V ++ L+ +IAELI  K I  + D+R
Sbjct: 241 LKTGRGIVRTRGVAEVVENK-GKEEIIISAIPYNVNRASLVMRIAELIKEKAIEGISDLR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES E+ RIV     R   P +++  ++  + +E+ F + +  L   R P+ M +  +L 
Sbjct: 300 DESTEETRIV-IELKRGAIPRVIINQLYKSTALESSFGVILLALD-NRRPKQMNIKEMLT 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VS 419
            ++ HRREV++RR++FR++  + R  IL+G  IA  N+D+ + IIR     +      ++
Sbjct: 358 CYIDHRREVIYRRTAFRLRKAEARAHILEGYKIALDNMDDFVKIIRASKNREEAKVSLMA 417

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q +AIL LRL  L  LE  +I+ E   L+    ++  +L +  +    I  E+
Sbjct: 418 KYPLTEIQTNAILELRLYQLTGLERDKIEEEYRKLMELIGELKDILENESRLLEVIKEEL 477

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
            E+KE +        RR+        D     + ++  E   + ++++G+I+        
Sbjct: 478 GEMKEKYGNP-----RRSQVI---AVDGDISMEDLVPNEGCMITVTHKGFIKRTSLDEYR 529

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--A 589
             K     +      E D ++    A T D ++     G+ Y     ++  G    +  A
Sbjct: 530 SQKRGGKGVIGSGQYEDDFVEHLFTASTHDYVMCFMNSGRVYVEKVYHIPEGSRTAKGRA 589

Query: 590 IQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           +  + +L   + I               +++ +  G     + S+   + + G   + + 
Sbjct: 590 MANVFELQEGEKIAAMICVKDFDESAQSIVLATENGVTKKTKLSDFRNHRKGGIIGINID 649

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             + +      +G D + +V  N + + F    + +  R  +GVR    K      V   
Sbjct: 650 EGDNLVGARLTSGEDDIILVTSNAQSIRFPETDLRDQGRNTRGVRGIKLKSENDKVVAIE 709

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +    + +      +           RGG G +      +S K   +
Sbjct: 710 IVDDEAKLLIAGANGLGKRTEFSEYRQQSRGGSGIIAI----KSDKVAGA 755



 Score = 90.6 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 77/213 (36%), Gaps = 7/213 (3%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E  +       +   E     V+ +  G  +  K           +  ++  EGD+L  A
Sbjct: 598 EGEKIAAMICVKDFDESAQSIVLATENGVTKKTKLSDFRNHRKGGIIGINIDEGDNLVGA 657

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D I+L++++ ++   P  +L     +   ++ +   + N  +V   + D   KL
Sbjct: 658 RLTSGEDDIILVTSNAQSIRFPETDLRDQGRNTRGVRGIKLKSENDKVVAIEIVDDEAKL 717

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+  + G     E SE    +R G   + + S++    +     D + +     + +   
Sbjct: 718 LIAGANGLGKRTEFSEYRQQSRGGSGIIAIKSDKVAGALSVTDADEIMMFTLKGQAVRSP 777

Query: 675 IDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
           ID +    R   GV+L +  +      I   I 
Sbjct: 778 IDTVRVTGRAASGVKLVNLGNKDELIGISKVIA 810


>gi|296437564|gb|ADH19725.1| DNA gyrase subunit A [Chlamydia trachomatis G/11074]
          Length = 836

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/762 (31%), Positives = 376/762 (49%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGG I+   E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+I ELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIVELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDK-NLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR     +            +E Q  
Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRT       A      + +I  E + + IS   +++ +            +   
Sbjct: 483 -----RRTRIE--MDAGDVRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVT 535

Query: 550 SLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--- 597
              +            A T D +L+ +  G+ Y L    L  G    +   ++  L    
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        ++    L + + KG    V      +  +KG   L++   +++    
Sbjct: 596 PGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAAR 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  D++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RG VG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGA 757



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 53/154 (34%), Gaps = 5/154 (3%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
               A+  ++++L +  G A   P   +         ++ +   N    +V+  V     
Sbjct: 654 ARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G        +     R         +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGAISVTDCDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
           + +  ++  +  M R  +GVRL + ++G     +
Sbjct: 774 QAIRINMQDVRVMGRATQGVRLVNLREGDTLVAM 807


>gi|257051221|ref|YP_003129054.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940]
 gi|256689984|gb|ACV10321.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940]
          Length = 823

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/772 (32%), Positives = 407/772 (52%), Gaps = 31/772 (4%)

Query: 1   MGVDNISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  D         +   V+ V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++
Sbjct: 1   MSSDVPEGPGVTADAARVEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM EMG+  G++ +KS+ +VGEV+G  HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG
Sbjct: 61  AMHEMGVSSGSSHRKSSSVVGEVMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD AAA RYTEARM  +AE +L  +++D VDF+  Y++   EP V PS FPNLL NG
Sbjct: 121 SMDGDPAAAMRYTEARMAPIAEELLADIEKDTVDFQANYDDRLEEPEVLPSAFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGM+T+IP HN+ E+ +A + LIDNP+  +  L+EY+ GPDFPTG  IV  + +I
Sbjct: 181 SSGIAVGMSTNIPPHNLGEVIDATIHLIDNPDAEVTDLMEYVKGPDFPTGANIV-GKNAI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y  GRG   VRA +  EE   G   IV+TEIP+Q  K+R++E+IA+ +    I  + 
Sbjct: 240 HAAYATGRGRLTVRAEYEFEETDSGRPRIVITEIPFQENKARMVERIADDVNEGIIEGVS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  D   V+    R  + D++  +  +   +E+ F +    L     P+V+ L  
Sbjct: 300 DLRDESDRDGVRVVIECKRGANVDVVE-NQLLDHHLESTFGVINLALVD-GEPRVLTLKE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-- 417
            L+E++AHR+EV+ RRS F +   + R  IL+G L A  N+D ++ +IR+ +        
Sbjct: 358 TLEEYVAHRKEVVRRRSEFDLAEAEDRAHILEGRLKALGNVDSVVDLIRDSEDRDEAKAA 417

Query: 418 -VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               F  +  Q   I+ ++L SL  +E  +++ E + + AE E+++++LN   +  + I 
Sbjct: 418 LEETFDFSTEQAQHIVRMQLGSLTSMEAAEVEDEYEEVEAEIERLETILNDESELLDVIK 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+R VK+ +        RRT+  E    D    ++ +I +E   VV++   +I+ + + 
Sbjct: 478 DELRAVKDEYDD-----DRRTSIVE---DDGTVTREDLIPEEECLVVVTEDDYIKRMPAD 529

Query: 537 SVDLSALH--------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--H 586
             D              KEGD +     A+T D +L  +  G+ Y L    +        
Sbjct: 530 RFDAQHRGGKGIIGADPKEGDRVSTVFRANTHDYLLAFTNHGQVYRLRTYEIPEMSRTAR 589

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G++   LI+ +  ++I        +D    + + + +G       SE       G    K
Sbjct: 590 GKSAVNLINFDDGEEITAVVSMDEFDDDECITMATRQGYVKRTCCSEFENILSTGIIAAK 649

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDV 700
           +   +++   V   G+  + +  E+   + F   +  +M R  +GVR    +DG  ++ V
Sbjct: 650 LEDGDELVDAVVTDGESDLVIATEDGMTIRFDETEARQMGRTARGVRGIDLRDGDNVAGV 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     +    +    R Y +           R G G +  K   R+G   +
Sbjct: 710 VATDEHDERALLTVTERGYGKRTPLSEYRTQSRYGKGLIDIKTGDRNGGVTA 761



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 7/119 (5%)

Query: 594 IDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           IDL    ++      D      LL V+ +G       SE    +R GK  + + + ++  
Sbjct: 698 IDLRDGDNVAGVVATDEHDERALLTVTERGYGKRTPLSEYRTQSRYGKGLIDIKTGDRNG 757

Query: 652 LVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
            V  V      DHV V+    +++   ++ +  + R   GV +           +    
Sbjct: 758 GVTAVNAVAEDDHVIVMSATGQIMRCPVEDVSTVGRNTMGVTIMDVAADDTVASVDVIP 816


>gi|237738560|ref|ZP_04569041.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31]
 gi|229424043|gb|EEO39090.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31]
          Length = 812

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/758 (33%), Positives = 409/758 (53%), Gaps = 30/758 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKK
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDN +I I +L+ +I GPDFPTG II   R  I+E+Y+ GRG  +VR 
Sbjct: 182 NLGELVDGILALIDNKDIEILELMNFIKGPDFPTGAIID-GRAGIIEAYKTGRGKIKVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   ++ 
Sbjct: 241 KVDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR EV+ R
Sbjct: 301 EVKKGEEPELVLNKLYKYTDLQTTFGVIMLSLV-NNVPRVLNLKEMLNEYIKHRFEVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ ++  T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   + A  +++  +L    + +  +  E+ E+KE ++    
Sbjct: 420 LDMKLQRLTGLEREKIDNEYKEIEALIKELREVLADNSKIYEIMKKELLELKEKYND--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
             +RRT   E        L + +I+ E I +  +N+G+++          +     +SAL
Sbjct: 477 --KRRTQIEE---ERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSAL 531

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI--QLLIDLNHNQD 601
           +  E D  +  + A T D +++ +  GK Y + A  +              +I+L+  + 
Sbjct: 532 NTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLIGNIINLSEGEK 591

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +    V   +    +++ ++  G        E       G   +K+  ++ +  V  +  
Sbjct: 592 VRDTIVIKEFVPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKIKEDDDIIFVGLIED 651

Query: 659 ---DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
              + + +   +     F  D I    R  +GV+  + ++G                +  
Sbjct: 652 VTKEEILIATHDGYCTRFLTDTIRPTGRSTQGVKAITLREGDAVVSAMLIKNPETDILTI 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +  +        RGG G +  K   ++GK +S
Sbjct: 712 TENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVS 749



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 5/141 (3%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + DG         +       + ++ +     +  +    + +    +L ++  G     
Sbjct: 661 THDGYCTRFLTDTIRPTGRSTQGVKAITLREGDAVVSAMLIKNPETDILTITENGYGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
              E     R GK  + + + E   K+  V++VT D  +  +  N  ++  SI +I  + 
Sbjct: 721 SLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVTEDEELMCITSNGIVIRTSISEISRIG 780

Query: 683 RG-KGVRLQSYKDGGISDVIC 702
           R  +GVR+    D      I 
Sbjct: 781 RATQGVRIMKVADEEKVAAIT 801


>gi|183980041|ref|YP_001848332.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M]
 gi|183173367|gb|ACC38477.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M]
          Length = 839

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/777 (29%), Positives = 387/777 (49%), Gaps = 40/777 (5%)

Query: 6   ISNSNTLV----EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++         + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM
Sbjct: 1   MTDTTLPPGGEASDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+ 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ 
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN++E+ EA          + E ++  + E + GPDFPT G ++   +
Sbjct: 181 GIAVGMATNIPPHNLRELAEAVFWCLENHDADEEATLAAVTERVKGPDFPTSG-LIVGTQ 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y+ GRG  R+R    +EE  RG   +V+TE+PYQV     I  IAE +   ++  
Sbjct: 240 GISDAYKTGRGSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAG 299

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + 
Sbjct: 300 ISNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLR 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           LD +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR        
Sbjct: 359 LDQMIRYYVEHQLDVIIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIA 418

Query: 417 M---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
               +    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q  
Sbjct: 419 RVGLIELLDIDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIADLEDILAKPERQRA 478

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
            +  E+ E+ +          RRT       AD     + +I +E + V I+  G+ +  
Sbjct: 479 IVRDELAEIVDKHGD-----DRRTRII---AADGEVSDEDLIAREDVVVTITETGYAKRT 530

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--G 583
                   K     +     K+ D ++      T D IL  +T G+ Y   A  L     
Sbjct: 531 KTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEALR 590

Query: 584 RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+     + I        Y+    L++ +  G     + ++  +N   G  
Sbjct: 591 TARGQHVANLLAFQPEERIAQVIQIKSYEDAPYLVLATQNGLVKKSKLTDFDSNRSGGIV 650

Query: 641 FLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGG 696
            + +  E+++   V   + + + +V  N + + FS     +  M R   GV+   +    
Sbjct: 651 AINLRGEDELVGAVLCSSEEDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADD 710

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +   + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 711 RLLSLNV-VREGTYLLVATAGGYAKRTGIEEYPVQGRGGKGVLTIMYDRRRGRLVGA 766



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 12/208 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ +  G ++  K    D +        + +  D L  A+   + + +LL+S 
Sbjct: 618 YEDAPYLVLATQNGLVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSEEDLLLVSA 677

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           +G++    A +      G   +    +  N +  +++  V      LLV ++ G A    
Sbjct: 678 NGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNVVREGTYLLVATAGGYAKRTG 737

Query: 628 ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
             E     R GK  L +       ++   + V  D  +  +     ++  +  Q+ +  R
Sbjct: 738 IEEYPVQGRGGKGVLTIMYDRRRGRLVGALIVDDDSELYAITSGGGVIRTAARQVRKAGR 797

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLT 710
             KGVRL +  +G     I     E   
Sbjct: 798 QTKGVRLMNLGEGDTLLAIARNAEENAD 825


>gi|217032711|ref|ZP_03438196.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128]
 gi|298736397|ref|YP_003728923.1| DNA gyrase, subunit A [Helicobacter pylori B8]
 gi|216945585|gb|EEC24238.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128]
 gi|298355587|emb|CBI66459.1| DNA gyrase, subunit A [Helicobacter pylori B8]
          Length = 826

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/767 (33%), Positives = 415/767 (54%), Gaps = 31/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNLINETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP  +++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRMDEIIDALMHVLENPNAALDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAISEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RFS
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFS 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE FS       RRT   E   + ++   + +I  EP+ V +S +G+++           
Sbjct: 478 KEQFSSP-----RRTEIQE---SYESIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  +    E D ++    A+T D +L ++  G+ Y L    +        G+AI  
Sbjct: 530 RGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEE 648
           LI L  ++ I+       +     L   +  G       SE   N    G   + +   +
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDKGD 649

Query: 649 KMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++     V  +  H+ +       + F ++ + E+ R  +GVR     +           
Sbjct: 650 ELVGAKVVDNNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVRGIKLNENDFVVGAVVIS 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    +  +     +           RGG G +  K   ++G  + 
Sbjct: 710 DDSNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVG 756



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 6/152 (3%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G     P  ++         ++ +    ++  +    + D + KLL VS  G
Sbjct: 663 HLLIASHLGIFIKFPLEDVREIGRTTRGVRGIKLNENDFVVGAVVISDDSNKLLSVSENG 722

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSID 676
                        +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI 
Sbjct: 723 LGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVGVISVDDENLDLMILTASAKMIRVSIK 782

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            I E  R   GV+L +  D  +    C K  E
Sbjct: 783 DIRETGRNASGVKLINTADKVMYVNSCPKEEE 814


>gi|158311874|ref|YP_001504382.1| DNA gyrase subunit A [Frankia sp. EAN1pec]
 gi|158107279|gb|ABW09476.1| DNA gyrase, A subunit [Frankia sp. EAN1pec]
          Length = 837

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/762 (30%), Positives = 384/762 (50%), Gaps = 21/762 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
                + ++ + +   ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G    
Sbjct: 6   PPPPGDRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + K +R+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPL+ G GNFG+   D  AA 
Sbjct: 66  RGYFKCSRVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM  +A  +L+ +D++ VDF   Y+    EP+V PS+FPNLL NG  GIAVGMAT
Sbjct: 126 RYTEARMAPLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMAT 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRL 245
           +IP HN+ E+ +     +D+PE + E+LLE     I GPDFPT G ++  R  I ++YR 
Sbjct: 186 NIPPHNLVEVAKGVQWSLDHPEATAEELLEALLGIIKGPDFPTHG-LIVGRNGIEDAYRT 244

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG  R+RA   VEE   G   +VVTE+PYQV    L EKIAEL+   ++  + D+RDE 
Sbjct: 245 GRGSIRMRAVVNVEENK-GRTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGISDVRDET 303

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SA   + ++    R     +++ +++  + ++  F +NM  +    VP+ + LD ++  +
Sbjct: 304 SARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVD-GVPRTLRLDQMISYY 362

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRF 421
           + H+ +V+ RR+ ++++    R+ +L GLLIA  ++DE+IA+IRN +  +     +++RF
Sbjct: 363 VEHQVDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVIALIRNAESAEVARGQLMARF 422

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q  AIL+++LR L  LE  +I  E   L A+ ++++++L S  +Q   I  E+ E
Sbjct: 423 SLSEIQATAILDMQLRRLAFLERQRIIDEAAELRAKIDELEAILASPVRQREIIGQELAE 482

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V E F                     A     +          +     RS K     + 
Sbjct: 483 VVEKFGDERRTRLVPFEGDMSVEDLIAREDVVVTVTRGGYAKRTKTDLYRSQKRGGKGVQ 542

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
               +E D ++      T   +L  +  G+ Y   A  L       +   +  ++  + +
Sbjct: 543 GAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILAFSQD 602

Query: 600 QDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I              L++ + +G       ++  +N   G   + +  ++++     V
Sbjct: 603 ERIAEVMAIQDYQAAPYLVLATKRGLCKKTALTDFDSNRAGGLVAINLRDDDELISARLV 662

Query: 657 -TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEG-LTW 711
             GD + +V  N + + F  D   +  M R   GV    + +      +   + E     
Sbjct: 663 APGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDEADELLSMDVVVPESPADL 722

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + +    Y +        +  RGG G L  K     G  + +
Sbjct: 723 LVATSGGYAKRTPLAEYPIQGRGGKGVLTAKIVSTRGGLVGA 764



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 5/111 (4%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVT-GDH 660
             V +S   LLV +S G A     +E     R GK  L    VS+   +   + V   D 
Sbjct: 713 VVVPESPADLLVATSGGYAKRTPLAEYPIQGRGGKGVLTAKIVSTRGGLVGALVVEPNDQ 772

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           +  +  N  +L      +    R   GVRL   + G     +        +
Sbjct: 773 LYAITSNGGVLRTVAKDVRRAQRQTMGVRLIDLEAGVQVVGVARNADANDS 823


>gi|291297545|ref|YP_003508823.1| DNA gyrase subunit A [Stackebrandtia nassauensis DSM 44728]
 gi|290566765|gb|ADD39730.1| DNA gyrase, A subunit [Stackebrandtia nassauensis DSM 44728]
          Length = 831

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/780 (29%), Positives = 386/780 (49%), Gaps = 43/780 (5%)

Query: 6   ISNSNTLVEE-------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           +S+ N    E        ++ V +   ++  YL YA+S I  RA+PD+RDG KPVHR+I+
Sbjct: 1   MSDPNQPELEVPEVGAGRIEPVGVEVQMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           + M + G      + K +R+VG+V+G+ HPHGD ++YDSLVR+AQP+  RYPLI GQGNF
Sbjct: 61  YGMYDGGYRPDRGYVKCSRVVGDVMGQYHPHGDSAIYDSLVRMAQPWSMRYPLIDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+   D AAA RYTE+R+  +A  +L+ +DED+VDF   Y+ + +EP V P++ PNLL N
Sbjct: 121 GSPGNDPAAAMRYTESRLDPLAMEMLRDIDEDSVDFGPNYDGKTTEPEVLPARIPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVE 234
           G+ GIAVGMAT IP HN++E+  A    +DN E   E+     ++ + GPDFPT   ++ 
Sbjct: 181 GSEGIAVGMATKIPPHNLREVAAAVNWCLDNTEADEEETLEALIKLVQGPDFPTSA-LIV 239

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++YR GRG  R+RA   VEE  +G  C+VVTE+PYQV    L E+IAEL+   +
Sbjct: 240 GRAGIEDAYRTGRGSIRMRAVIEVEEDRKGRPCLVVTEMPYQVNPDNLAERIAELVKDGK 299

Query: 295 IPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           +  + DIR+ES+      ++    R     +++ +++  + ++  F  NM  L    VP+
Sbjct: 300 LNGIADIREESSGRTGMRLVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVD-GVPR 358

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            + L   ++ ++AH+ EV+ RR+ FR++  + R  IL+GL  A   +D +IA+IR+    
Sbjct: 359 TLNLAQFVRHYVAHQIEVIVRRTKFRLRKAEERAHILRGLQKALDQLDAVIALIRSSPSA 418

Query: 414 KPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           +      ++   + E Q  AIL+++LR L  LE  +I  EL  + A+   ++ +L   ++
Sbjct: 419 EESKTGLMNLLEVDEIQATAILDMQLRRLAALERQKILDELAEIEAKIADLEDILAKPER 478

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
           Q   I  E+  +   +        RRT              + +I +E + V I+  G+ 
Sbjct: 479 QRQIIKDELGAIVAKWGDE-----RRTKIVPFEGE---VNMEDLIAREDVVVTITRGGYA 530

Query: 531 RSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +  K             +S    K+ D +       T D +L  +  G+ Y   A  L  
Sbjct: 531 KRTKVDLYRSQRRGGKGVSGATLKQDDLVSHFFVCSTHDWMLFFTNKGRVYRAKAYELPE 590

Query: 583 --GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
                 G+ +  L+    ++ I        YD    L++ + +G     + ++  +    
Sbjct: 591 ASRTARGQHVANLLAFQPDEQIAQVMQISGYDVAPYLVLATRRGLVKKTKLTDFDSPRTG 650

Query: 638 GKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYK 693
           G   + +   +++     +   D + +V +  + + F      +  M R   GV    + 
Sbjct: 651 GVIGINLRDGDEVVGAALINPDDDLLLVSKKAQAIRFMASDESLRPMGRATSGVIGMRFV 710

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +     +    +  G+  + +    Y +           RGG G L  K   R G  + +
Sbjct: 711 EADEL-LTMEVVRGGMDILVATSGGYAKRTPVEEYPQQGRGGKGVLTAKITERRGNLVGA 769



 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 6/114 (5%)

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV 656
            +++T  V      +LV +S G A      E     R GK  L     E+   +   + V
Sbjct: 713 DELLTMEVVRGGMDILVATSGGYAKRTPVEEYPQQGRGGKGVLTAKITERRGNLVGALSV 772

Query: 657 T-GDHVAVVGENRKLLIFSIDQIPEMS-RGK-GVRLQSYKDGGISDVICFKICE 707
           T  D +  +     ++   +  +   + R   GV+L    +G     +     E
Sbjct: 773 TPDDELFAITSEGGVIRTPVKPVRRTTDRNTMGVKLMDLPEGVSLLAMARSADE 826


>gi|304439073|ref|ZP_07398992.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372432|gb|EFM26019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 810

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/764 (34%), Positives = 417/764 (54%), Gaps = 33/764 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             + E  +  V +   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M  +G+   
Sbjct: 3   ENVNENGIIDVDISKKMRSSYLDYSMSVIVSRALPDVRDGLKPVHRRIVYGMQTLGITPD 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            +++KSA +VGEV+GK HPHGD S+YD+  RLAQ F  RY L+ GQGNFGN+DGDS AA 
Sbjct: 63  KSYRKSATLVGEVMGKFHPHGDSSIYDAAARLAQDFNIRYTLVDGQGNFGNVDGDSPAAP 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM+++A+ +L+ +++D VDF   Y+E + EP V PS+FPN+L NG++GIAVGMAT
Sbjct: 123 RYTEMRMSKIAQEMLRDINKDTVDFVPNYDEREVEPSVLPSRFPNILVNGSAGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           ++  HN+ E   A +  I+N +I IE+L++ I GPDFPTG II+  ++ I+++Y+ GRG 
Sbjct: 183 NMAPHNLGESISAVIDYINNEDIEIEELMKSIKGPDFPTGAIIL-GKQGIIDAYKTGRGK 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRAR  +EE   G + IV+TEIPYQV K+ LI KIA+L+  K I  + +IRD S+   
Sbjct: 242 IQVRARAEIEEHK-GRYKIVITEIPYQVNKTNLIVKIADLVKNKSIEGISNIRDLSSHKT 300

Query: 310 RI-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            I +     R  +P++++ +++  + M+  F +    L     P+V+ L  I+K ++ H+
Sbjct: 301 GIKIDIDLKRDANPNVVLNNLYKNTQMQITFGIINLCLV-NGEPKVLNLKEIIKYYVDHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FSLTE 425
           R V+ RR+ F ++  + R  I++GL IA  NID II I+R     +         F LT+
Sbjct: 360 RNVVRRRTQFDLEKAEARAHIIEGLKIALDNIDRIIKIVRESSDDQEAKNKFTKEFGLTD 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++R+R L  LE  +++ E  +L+    K+ S+L + K   N I  E+ E+KE 
Sbjct: 420 IQGQAILDMRIRRLTGLEREKLEQEYQDLIKLIAKLKSILENKKLLDNTIIEELEEIKEK 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
           +S       RRT        +     + +IE+E + + ++  G+I+ +   +        
Sbjct: 480 YSD-----LRRTVLA---PDEGDIDSEDLIEEEDVVITLTEFGYIKRMPEGTYKPQRRGG 531

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID 595
             +SAL  +E D +K      T D IL  +  G+ Y+L A  +       +  AI  L++
Sbjct: 532 TGISALTTREEDFVKDIYITSTHDTILFFTNFGRVYSLKAYEIPESSRQAKGTAIINLLN 591

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ +         D    L++ +  G       SE     + G   + ++  + +  
Sbjct: 592 LEGDEFVTAVIPVRNVDENANLVMATKNGLIKKTSYSEFEKIRKNGLIAITLNEGDNLIG 651

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGL 709
           V   +G D + +V +N   + FS   +  M R   GV+    K+    +V+ F+I  +  
Sbjct: 652 VRLTSGRDEIMIVTKNGMAIRFSESDVRNMGRTAMGVKSIDLKNDD--EVVSFEIPQDDK 709

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  +   + +           R GVG L  K   +SGK +S+
Sbjct: 710 YLLVISENGFGKMTKMTEYRKQNRAGVGLLTYKATEKSGKLVSA 753



 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 73/187 (39%), Gaps = 6/187 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
              +    K     L A+   EGD+L         D I++++ +G A      ++ +   
Sbjct: 624 KTSYSEFEKIRKNGLIAITLNEGDNLIGVRLTSGRDEIMIVTKNGMAIRFSESDVRNMGR 683

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
               +   IDL ++ ++V+  +      LLV+S  G   + + +E     R G   L   
Sbjct: 684 TAMGV-KSIDLKNDDEVVSFEIPQDDKYLLVISENGFGKMTKMTEYRKQNRAGVGLLTYK 742

Query: 646 SEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           + EK   +     +   D + ++  +  ++    + I  M R   GV+L + KD  +  V
Sbjct: 743 ATEKSGKLVSAKVIDKSDEIMIITVSGIIIRIGCEGISVMGRHTTGVKLMNIKDSEVVSV 802

Query: 701 ICFKICE 707
             +   E
Sbjct: 803 AKYIGEE 809


>gi|148654890|ref|YP_001275095.1| DNA gyrase subunit A [Roseiflexus sp. RS-1]
 gi|148567000|gb|ABQ89145.1| DNA gyrase subunit A [Roseiflexus sp. RS-1]
          Length = 823

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/755 (32%), Positives = 401/755 (53%), Gaps = 30/755 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+  ++   +   YL YA+S I  RA+PD RDG KPV  RI++ M +MG+     FKK A
Sbjct: 6   VRPRNITDEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGE++GK+HPHGD +VYD+LVRLAQP+  RYPL+ GQGNFG+IDGD  AA RYTEAR+
Sbjct: 66  RIVGEILGKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSIDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T +AE +L  ++++ VDFRD ++    EPVV P++ PNLL NG +GIAVGMAT+IP HN+
Sbjct: 126 TPIAEEMLADIEKNTVDFRDNFDGLYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A   LIDNP+ +IE L   + GPDFPT G+I+   E I+ +Y  GRG   +RA+ 
Sbjct: 186 NEVCDAITHLIDNPDATIEDLARIMPGPDFPTAGMIL-GTEGIMNAYSTGRGHITIRAKA 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE  RG++ IVVTE+PYQV K+RL E+IAEL   ++I  + D+RDES      ++   
Sbjct: 245 HIEEAARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIIL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   P  ++ +++  + M+T F +NM  L   GR P+++ L  +L+E++ HRREV+ RR
Sbjct: 305 KQDAQPKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRLLQEYIDHRREVIRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           + F +     R  IL+GL IA  N+D +IA IRN       +  +++ F+L+E Q +AIL
Sbjct: 365 TEFDLDKARARAHILEGLKIAIDNLDAVIATIRNSRSRDHARTNLMNGFALSEAQANAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++L  L  LE  +I+ E   ++    +++ +L + ++  + I  ++ ++K  +      
Sbjct: 425 EMQLGRLAALERQRIEEEYREVIQLIGELEDILANPRKILHLIKQDLADLKAKYGDP--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL--------H 544
             RRT       AD     + +I    + + +++RG+++                     
Sbjct: 482 --RRTRII--PDADGEVSDEDLIPDVRVLITLTDRGYVKRQSPDIYRTQRRGGRGIRGAT 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
            +E D ++  L A T D +L  +  GK Y + A  L       +   +  LI L   + +
Sbjct: 538 IREQDVVRHILAASTMDDLLFFTDRGKVYQIKAHELPDASRTAKGLPLVNLIALEPGEQV 597

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            +      ++    L++ + +G        E       G   + +   +++  V    G 
Sbjct: 598 TSVLAVPDFEKAEYLIMATVRGKIKRTSIKEYSQVRSNGLIAIGLEDGDELGWVAMTQGH 657

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           + V +     + + F  +++  M R   GV   +  +G     +     E    +     
Sbjct: 658 EDVLLTTARGQTIRFRQEEVRPMGRPATGVIGIALAEGDRVVSMDLA-RENAALLVVTAN 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +        +  R   G +  +   R G  ++
Sbjct: 717 GYGKRTALEEYPVKGRATGGVITIRL--RPGDEVA 749



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 51/160 (31%), Gaps = 3/160 (1%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
             A     +  ++       +   +  +R +   +  +  +   EGD +     A     
Sbjct: 650 WVAMTQGHEDVLLTTARGQTIRFRQEEVRPMGRPATGVIGIALAEGDRVVSMDLARENAA 709

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A      +G      + I L    ++  A V      L  ++  G 
Sbjct: 710 LLVVTANGYGKRT-ALEEYPVKGRATGGVITIRLRPGDEVAVAHVVHEHSLLTFITESGM 768

Query: 623 AFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
               E     +     +G T + ++  +++  +     D 
Sbjct: 769 VMRTEADGISMFGRNTQGVTIVNLAPNDRVAALCVEEPDE 808


>gi|312193903|ref|YP_004013964.1| DNA gyrase, A subunit [Frankia sp. EuI1c]
 gi|311225239|gb|ADP78094.1| DNA gyrase, A subunit [Frankia sp. EuI1c]
          Length = 830

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/774 (30%), Positives = 401/774 (51%), Gaps = 37/774 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +      + ++ + +   ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G
Sbjct: 1   MVDVLPPPGDRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + K +RIVG+V+G  HPHGD S+YD++VRLAQP+  RYPL+ G GNFG+   D 
Sbjct: 61  YRPDRGYFKCSRIVGDVMGNYHPHGDTSIYDTVVRLAQPWSLRYPLVDGNGNFGSPGNDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM  +A  +L+ +D D VDF   Y+    EP+V PS+FPNLL NG  GIAV
Sbjct: 121 PAAMRYTEARMAALAMEMLRDIDSDTVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+       ++NP+ + E+LLE     I GPDFPT G+IV  R+ I +
Sbjct: 181 GMATNIPPHNLREVAAGVQWALNNPDATDEELLEALLGIIKGPDFPTHGMIV-GRQGIED 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG  R+RA   VEE   G   +VVTE+PYQV    L EKIAEL+   RI  + D+
Sbjct: 240 AYRTGRGSIRMRAVVNVEENK-GRTQLVVTELPYQVNPDNLAEKIAELVRDNRISGISDV 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           RDE SA   + ++    R     +++ +++  + ++  F  NM  +    VP+ + LD +
Sbjct: 299 RDETSARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGANMLAIVD-GVPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VM 417
           ++ ++ H+ +V+ RR+ ++++    R+ +L+GLLIA  ++D++IA+IRN +        +
Sbjct: 358 IRYYVEHQVDVIVRRTRYQLRKAQERLHVLEGLLIALDHLDDVIALIRNAESADAARGQL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++R+SL+E Q  AIL+++LR L  LE  +I  E   L A+  +++++L S ++Q   I  
Sbjct: 418 MTRYSLSEIQATAILDMQLRRLAALERQRIIDEAAELRAKVTELEAILASPQRQREIIGE 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++EV + F        RRT              + +I +E + V ++  G+ +      
Sbjct: 478 ELKEVVDKFGDE-----RRTRIVPFEGEMS---IEDLIAQEDVVVTVTRGGYAKRTKTDL 529

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE- 588
               K     +     +E D ++      T   +L  +  G+ Y   A  L       + 
Sbjct: 530 YRSQKRGGKGVQGAALREDDIVEHFFVTTTHHYLLFFTNKGRVYRAKAHELPEQARSAKG 589

Query: 589 -AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             +  ++    ++ I        Y +   L++ + +G       ++  +N   G   + +
Sbjct: 590 QHVANILAFGQDERIAEVMAIRDYAAAPYLVLATKRGLCKKSALTDFDSNRAGGLVAINL 649

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYK-DGGISD 699
             ++++     V   D + +V  N + + F  D   +  M R   GV    +  D  +  
Sbjct: 650 REDDEVIGARLVGADDDLLLVSRNAQSIRFHADDEQLRPMGRATAGVIGMRFDADDELLS 709

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   K     + + +    + +  +     L  RGG G L  +  P  G  + +
Sbjct: 710 IEVIKPDSTASLLVATSGGFAKRTHLNEYPLQGRGGKGVLTARIVPSRGNLVGA 763



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVT-G 658
           +     DST  LLV +S G A     +E     R GK  L    V S   +   + V   
Sbjct: 710 IEVIKPDSTASLLVATSGGFAKRTHLNEYPLQGRGGKGVLTARIVPSRGNLVGALVVEPD 769

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           D +  +  N  +L      + +  R   GV+L   + G     + 
Sbjct: 770 DQLYAIASNGGVLRTVARDVRQAQRQTMGVKLIDLETGVQVVGVA 814


>gi|260101873|ref|ZP_05752110.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus DSM 20075]
 gi|260084301|gb|EEW68421.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus DSM 20075]
          Length = 827

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/763 (30%), Positives = 387/763 (50%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTGGII+        +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYR-AYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA   +E    G   I+V+EIPY V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +     P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRYASASVVLNNLFKQTQMQANFGMNMVAIVD-GAPHYLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           +++V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIR+          ++SRF L 
Sbjct: 360 QKDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSH 536
            F       +RRT     +    +   + +IEK+ I + +++ G+I+ +           
Sbjct: 480 RFGD-----KRRTEIG--ASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +       +   +  L+
Sbjct: 533 GKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNLL 592

Query: 595 DLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T            L  ++  G       SE       G   L +   +++ 
Sbjct: 593 QLEKGEKVQTVINVPEGADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELS 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+   G    ++G +    + F+   +  M R   GVR  + +D            +  
Sbjct: 653 NVLTTDGKQNILIGTHLGYAVTFNEKDVRAMGRTAAGVRGINLRDHDYVVGSGVLDADD- 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +   Y +        +  RGG G        ++G    
Sbjct: 712 QVLVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  ++GD L   L       IL+ +  G A T    ++ +
Sbjct: 623 TVKRTHVSEFSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNEKDVRA 682

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                 A    I+L  +  +V + V D+  ++LV+S  G       +E     R GK   
Sbjct: 683 MGRTA-AGVRGINLRDHDYVVGSGVLDADDQVLVISENGYGKRTPAAEYPVKGRGGKGIK 741

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     ++V   G  + V+  +  ++ F    + +  R   GVRL    D   
Sbjct: 742 TANITEKNGPLAGVIVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQ 801

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 802 VASLTIVPSE 811


>gi|212697383|ref|ZP_03305511.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675575|gb|EEB35182.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 813

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/766 (32%), Positives = 418/766 (54%), Gaps = 32/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  N    +N+  V L   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M  +G
Sbjct: 1   MTEEN---YQNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD     +KSAR+VGEV+GK HPHGD ++YD+LVRLAQ F  RYPL +GQGNFG+IDGD 
Sbjct: 58  LDPNKPTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDD 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE +M+++A+ +L+ +++D VDF   ++EE+ EP V PS+FPNLL NG++GIAV
Sbjct: 118 AAAMRYTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ +  +A +A ++NPEIS+++L + I GPDFPTG  I+  +  I ++Y+ 
Sbjct: 178 GMATNMAPHNLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQIL-GKAGIKKAYKT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RA   +E   +    I+VTEIPYQV K+ LI+KIAE +  K++  + DIRDES
Sbjct: 237 GRGKLKLRAVARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++ +++  + +ET F +    L    VP+++ L  ++K ++
Sbjct: 297 DRKGMRIVIEVKRDSNANIVLNNLYKQTQLETTFGIINLALVD-GVPKILDLKELIKYYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H+++V+ RR+ F +    +R  I++GL+IA  NIDEII IIR+         +   +F 
Sbjct: 356 KHQKDVVRRRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEKFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q  AIL+++L+ L  LE  ++++E   L  + E   S+LN  ++  + I  EI E+
Sbjct: 416 LTDPQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTSILNDEEKLISVIEEEILEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE ++       RRT              + +IEKE + + +++ G+I+           
Sbjct: 476 KEKYAD-----DRRTKIVPDEGE---FDIEELIEKEDVLISLTHDGYIKRLPINTYKVQN 527

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                +SA + KE D ++  L  +T + +L  +  G+ Y+L    +     +  G+AI  
Sbjct: 528 RGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIPEASRQSRGQAIIN 587

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L+ ++ I         +   +L+  +  G     +        R G   + +   ++
Sbjct: 588 LISLSSDEKITDIMELSNLNEKSQLVFQTENGKIKKTDAELFTNIQRNGIIAISLEDGDR 647

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  + ++     + V  +    + F+   I  M R  +GVR     +      +   + +
Sbjct: 648 LVSIRQIDKPCDIIVTTKKGMAIKFASSDIRSMGRNARGVRAIRLGEDDKVVSMNI-VED 706

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +      + +  +        RGG G    K   ++   +++
Sbjct: 707 EVYLVVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITEKTKDVVAT 752


>gi|55377341|ref|YP_135191.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049]
 gi|55230066|gb|AAV45485.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049]
          Length = 814

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/772 (32%), Positives = 405/772 (52%), Gaps = 35/772 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D  +N      E ++ V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MSSD--ANDANAPAERIEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMG+    A +KS+ IVG+ +G  HPHG  ++YD+LVR+AQ F  RYPLI GQGNFG+
Sbjct: 59  MHEMGVSSNTAHRKSSSIVGDTMGDYHPHGGSAIYDTLVRMAQDFSMRYPLIDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM  +AE +L+ +++D VDF   Y++   EP V PSK PNLL NG+
Sbjct: 119 MDGDPAAAMRYTEARMDPLAEELLKDIEKDTVDFSSNYDDRLQEPDVLPSKVPNLLLNGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGM+T+IP HN+ E+ +A + L+ NP+ ++E L+E+I GPDFPTGG IV  R++I 
Sbjct: 179 SGIAVGMSTNIPPHNLGELVDATVHLLGNPDCTVEDLMEHIKGPDFPTGGNIV-GRDAIY 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG  RVRA + V         IV++E+PYQ  K+R++E+IA+ +   +I  + D
Sbjct: 238 SAYATGRGRLRVRAEYEV---DPEEGRIVISELPYQENKARVVERIADDVNEGKIEGISD 294

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   ++    R  + D++  +  +   +E+ F +    L     P+V+ L   
Sbjct: 295 LRDESDRNGVRIVVELKRGANIDVVE-NRLLDHHLESTFGVINLALVD-GQPKVLSLKES 352

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           L+ ++ HRREV+ RRS + +   + R  IL+G L A  N+++++ +IRN +         
Sbjct: 353 LQHYIDHRREVVRRRSEYDLAEAEDRAHILEGRLKALENVEDVVELIRNREDRDAARTGL 412

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              F  +E Q   I+ ++L SL  +E  +I+ E +++    + ++S+LNS ++  + IA 
Sbjct: 413 QESFDFSEEQAAHIVRMQLGSLTSMEAAEIEDEYEDVQNTIDYLESVLNSREKLDSVIAD 472

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E++EVK+ +        RRT+  E    +     + +I +E   VVI+   +I+ +   +
Sbjct: 473 ELQEVKDDYDD-----DRRTSIIE---DEGQVTHEDLIPEEDCVVVITEDDYIKRMPVEN 524

Query: 538 VDLSALH--------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HG 587
            D              KE D +     A++ D +L  +  G+ Y L    +        G
Sbjct: 525 FDPQNRGGKGIIGADPKENDRVSKVFRANSHDYLLCFTNQGQVYRLKTYEIPEMSRTARG 584

Query: 588 EAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++   LIDL+  +++      D       + +V+  G       SE       G    K+
Sbjct: 585 KSAINLIDLDDGEELTAVVSTDEFGDDECITMVTRNGYVKRTCCSEFENILSTGIIAAKL 644

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              +++  V    G   + +  E    + FS  ++ EM R  +GV     +D      + 
Sbjct: 645 EDSDELIDVDVTDGTGDLVIATEAGMTIRFSESEVSEMGRSARGVNGIKLQDDDKVAAMV 704

Query: 703 FKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +   + +      + +           R G G +  K   R+G+  ++
Sbjct: 705 ATDDDDPRSLLTVTEHGFGKRTKLDEYRTQSRYGKGLIDIKTDDRNGRVSTA 756



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 592 LLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
             I L  +  +      D      LL V+  G     +  E    +R GK  + + ++++
Sbjct: 690 NGIKLQDDDKVAAMVATDDDDPRSLLTVTEHGFGKRTKLDEYRTQSRYGKGLIDIKTDDR 749

Query: 650 MKLV----VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
              V         DH+ ++ E  +++      + ++ R  KGV +   ++      +   
Sbjct: 750 NGRVSTAKAVTDEDHLVIMSEQGQIMRIRAGDVSQVGRNTKGVTIMGLEEDDRVASVTVV 809

Query: 705 ICE 707
             E
Sbjct: 810 PAE 812


>gi|330751978|emb|CBL80491.1| DNA gyrase subunit A [uncultured Polaribacter sp.]
          Length = 848

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/763 (31%), Positives = 405/763 (53%), Gaps = 37/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    ++KK
Sbjct: 5   EKVIPINIEEQMKAAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY ++ GQGNFG++DGDS AA RYTE 
Sbjct: 65  SARIVGEVLGKFHPHGDTSVYDSMVRMAQNWSVRYMMVDGQGNFGSVDGDSPAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +++D VD R  +++   EP V P++ PNLL NG SGIAVGMAT++  H
Sbjct: 125 RMQKISEDMLADIEKDTVDHRLNFDDTLQEPTVLPTRIPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA I+N EI I++L+++I  PDFPTGG I+   + + +++  GRG   +RA
Sbjct: 185 NLTEVINGTLAYIENSEIEIDELMQHITAPDFPTGG-IIYGYDGVRDAFHTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VEEV  G  CI+VTEIPYQV K+ +I+K AEL+  K+I  + +IRDES  +   +++
Sbjct: 244 KAIVEEVK-GRECIIVTEIPYQVNKAEMIKKTAELVNDKKIEGISNIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  +F  + ++T F +N   L     P+ + L  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVK-GRPEQLNLKQLIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IA IR     D+ +  ++ RF LTE Q  AI
Sbjct: 362 RTEFDLKKAEARAHILEGLIIASDNIDEVIATIRASKNADEAREKLIVRFELTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D ++     +  +L +  ++++ I  E+  +K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEFDAIMLTITDLKDILANEPRRYDIIKEELAHIKDKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RR+       A      + MI    + V ISN G+++                    
Sbjct: 480 ---RRSII---EYAGGDMRIEDMIPDTKVVVTISNAGYLKRTNLEEYKVQNRGGRGQKGA 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             +  D L+          ++  +  GK + +    +  G  + +  A+Q LI++  +  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGKNTKGRAMQNLINIEPDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +    V        Y ++  +++ + KG        +       G   + +   +++   
Sbjct: 594 VKAFLVTQDLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEGDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGL 709
              TGD  V +   + K + F   +   M R   GVR  +   ++  +  ++     E  
Sbjct: 654 KLTTGDSQVMLALASGKSIRFEEAKTRPMGRTASGVRGITLQHENDEVIGMVAVNDMES- 712

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + + +        +  RGG G        ++G  ++
Sbjct: 713 NILVVSEKGFGKRSKLEDYRVTNRGGKGVKTLNISEKTGNLVA 755



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 78/214 (36%), Gaps = 6/214 (2%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           ++   +       ++  +   V  ++       +++ ++   +   +   L+  L    +
Sbjct: 602 DLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEGDEL-LEAKLTTGDS 660

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L L++        A     GR       + +   +++ I    V D    +LVVS K
Sbjct: 661 QVMLALASGKSIRFEEAKTRPMGRTASGVRGITLQHENDEVIGMVAVNDMESNILVVSEK 720

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSID 676
           G     +  +     R GK    ++  EK   +  +  V   + + ++ ++   +  +++
Sbjct: 721 GFGKRSKLEDYRVTNRGGKGVKTLNISEKTGNLVAIKNVDDSNDLMIINKSGLTIRMAVE 780

Query: 677 QIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
            +  M R  +GVRL + KD      +     E  
Sbjct: 781 DLRVMGRATQGVRLINIKDSDSIAAVAKVAHEED 814



 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 2/106 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               IL++S  G        +       G+ ++ L       ++V     D +  L++++
Sbjct: 710 MESNILVVSEKGFGKRSKLEDYRVTNRGGKGVKTLNISEKTGNLVAIKNVDDSNDLMIIN 769

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
             G    +   ++    R   G   + +   + +  V KV  +   
Sbjct: 770 KSGLTIRMAVEDLRVMGRATQGVRLINIKDSDSIAAVAKVAHEEDV 815


>gi|269124284|ref|YP_003297654.1| DNA gyrase subunit A [Thermomonospora curvata DSM 43183]
 gi|268309242|gb|ACY95616.1| DNA gyrase, A subunit [Thermomonospora curvata DSM 43183]
          Length = 839

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/764 (30%), Positives = 385/764 (50%), Gaps = 37/764 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ V ++  L+  YL YA+S I  RA+P++RDG KPVHRR+++AM + G      + K
Sbjct: 13  ERIEPVDIQVELQRSYLDYAMSVIVARALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPL+ G GNFG+   D AAA RYTE 
Sbjct: 73  CARVVGDVMGNYHPHGDSAIYDTLVRLAQPWAMRYPLVDGNGNFGSRGNDPAAAMRYTEC 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +A  +L+ +D++ VDF   Y+   +EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 133 RLAPLAMEMLRDIDKETVDFSPNYDGRSTEPDVLPARFPNLLVNGSAGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ E     +DN  +S E+    L+E I GPDFPT   ++  R+ I ++YR GRG  
Sbjct: 193 NLREVTEGVFWYLDNYHVSDEELLDALIERIKGPDFPTAA-LIVGRKGIEDAYRTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA   +EE+ +G  C+VVTE+PYQV    L  KIAEL+   ++  + D+RDE++    
Sbjct: 252 TMRAVVEIEEI-QGRTCLVVTELPYQVNPDNLALKIAELVKEGKLEGIADVRDETSGRTG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    +     +++ +++  + ++  F  NM  L    VP+ + LD  ++ W+ H+ 
Sbjct: 311 QRLVIVLKKDAIAKVVLNNLYKHTQLQETFGANMLALVD-GVPRTLRLDQFIRYWVDHQI 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTEN 426
           +V+ RR+ F ++  + R  IL+ LL A   I+E+IA+IR  +  +           + E 
Sbjct: 370 DVIVRRTRFLLRKAEERAHILRALLRALDRIEEVIALIRGSESAQAAQEGLMALLQIDEV 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++LR L  LE   I  E + L+AE    + +L S ++Q   +  E+  + E +
Sbjct: 430 QAQAILDMQLRKLAALERQAITDEYERLMAEIADFNEILASPERQRRIVREELEPIVERY 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + +I +E I V I+  G+ +          K    
Sbjct: 490 GDE-----RRTQIVPFDGDVSY---EDLIPEEDIVVTITRGGYAKRTRVDAYREQKRGGK 541

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +     K+ D ++      T   +L  +  G+ Y   A  L        G+ +  ++  
Sbjct: 542 GVRGAQLKQDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAYELPEGGRDSRGQHVANMLAF 601

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        YD    L++ + +G        +  +    G   + ++  +++   
Sbjct: 602 QPEEHIAEVLDLRDYDVAPYLVLATRQGKVKKTALKDFDSPRTGGIIAINLAEGDEVIAA 661

Query: 654 VKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
             V   D + +VG N + + F  D   +  M R   GV    +  G + D+   +  +  
Sbjct: 662 RLVFPTDDLLLVGTNAQAIRFHADDEQLRPMGRATSGVIGMRFDTGHLLDMHVIRDGDED 721

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +        +  RGG G L  K     GK + +
Sbjct: 722 -VLVATEGGYAKRTPVEQYPVQGRGGKGVLTAKIVQARGKLVGA 764



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 5/158 (3%)

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
            T D +L+ +             L   G   +  + +  +    +    + D    +LV 
Sbjct: 666 PTDDLLLVGTNAQAIRFHADDEQLRPMGRATSGVIGMRFDTGHLLDMHVIRDGDEDVLVA 725

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKV-TGDHVAVVGENRKLLIF 673
           +  G A      +     R GK  L      +  K+   + V   D V  +  N  ++  
Sbjct: 726 TEGGYAKRTPVEQYPVQGRGGKGVLTAKIVQARGKLVGALMVRPEDGVFAMTSNGGVIRT 785

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           +  +I    R   GVRL +  +G     I   +   + 
Sbjct: 786 NAGEIKRSGRQTMGVRLMNLAEGDSVVAIARNVESSME 823



 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 45/131 (34%), Gaps = 2/131 (1%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F  G  L + +     + +L+ +  G A   P          
Sbjct: 686 DEQLRPMGRATSGVIGMRFDTGHLLDMHVIRDGDEDVLVATEGGYAKRTPVEQYPVQGRG 745

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G+ +     +     +V A +      +  ++S G        EI  + R+  G   + +
Sbjct: 746 GKGVLTAKIVQARGKLVGALMVRPEDGVFAMTSNGGVIRTNAGEIKRSGRQTMGVRLMNL 805

Query: 645 SSEEKMKLVVK 655
           +  + +  + +
Sbjct: 806 AEGDSVVAIAR 816


>gi|217033673|ref|ZP_03439100.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10]
 gi|216943862|gb|EEC23299.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10]
          Length = 828

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/764 (33%), Positives = 405/764 (53%), Gaps = 25/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNLINETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG SGIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK-----EPITVVISNRGWIRSLKSHS 537
           KE FS      +RRT   EV          A             V   +           
Sbjct: 478 KEQFS-----SQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               + +  E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI 
Sbjct: 533 KGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLIS 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMK 651
           L  ++ I+       +     L   +  G       SE  +N    G   + +   +++ 
Sbjct: 593 LAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELV 652

Query: 652 LVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
               V  +  H+ +       + F ++ + E+ R  +GVR     +            +G
Sbjct: 653 SAKIVDKNAKHLLIASYLGIFIKFPLEDVREIGRSARGVRGIRLNENDFVVGAVVINDDG 712

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  +     +           RGG G +  K   ++G  +S
Sbjct: 713 NKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 7/135 (5%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G     P  ++         ++ +    ++  +    + D   KLL VS  G        
Sbjct: 671 GIFIKFPLEDVREIGRSARGVRGIRLNENDFVVGAVVINDDGNKLLSVSENGLGKQTLAE 730

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SR 683
                +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI  I E   R
Sbjct: 731 AYREQSRGGKGIIGMKLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGR 790

Query: 684 -GKGVRLQSYKDGGI 697
              GV+L    D  +
Sbjct: 791 NTSGVKLIDTADKVV 805


>gi|299133975|ref|ZP_07027169.1| DNA gyrase, A subunit [Afipia sp. 1NLS2]
 gi|298591811|gb|EFI52012.1| DNA gyrase, A subunit [Afipia sp. 1NLS2]
          Length = 904

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/851 (31%), Positives = 401/851 (47%), Gaps = 113/851 (13%)

Query: 6   ISNSNTLVEE-----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +++     ++     ++K VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++ 
Sbjct: 1   MTDPKDPADDSSSPADIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYG 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG+
Sbjct: 61  MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTE+R+ ++A  +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG 
Sbjct: 121 VDGDMPAAMRYTESRLQKIAHSLLDDIDKDTVDFQPNYDSSEREPKVLPAKFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A +ALIDNP + I+ L+  + GPDFPTGGII+  ++ I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACIALIDNPGLGIDDLINIVPGPDFPTGGIIL-GKQGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y LGRG   +R +  +E + +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + D
Sbjct: 240 SAYHLGRGSIVMRGKVSIETIRKDREAIIVSEIPYQVNKATMVERIAELVRDKKIEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   V+    R   PD+++  ++  + ++T F  NM  L  G  PQVM L  +
Sbjct: 300 LRDESDRDGYRVVVELKRDAVPDVVLNQLYKFTPLQTSFGANMVALD-GGRPQVMNLKDL 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L  ++A R  V+ RR+ F +     R  IL GL IA  NIDEII +IR    P     + 
Sbjct: 359 LTVFVAFRENVVSRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPATARDTL 418

Query: 421 F-----------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                          L+  Q  AIL+LRL+ L  L   +I  EL
Sbjct: 419 MSRDWPAKDVETMMMLIDDPRHRISADGTARLSMEQAKAILDLRLQRLTALGRDEISDEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  E      +L S  +    +  E+  VK  F+       RRT   +          
Sbjct: 479 DKLAVEIADYLDILRSRARVQGIVRDELTAVKNEFATP-----RRTVIVDQEGE---VED 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+++          K      S +  ++ D +     A T   +
Sbjct: 531 EDLIQREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPV 590

Query: 564 LLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G+ Y      L        G+A+  ++ +   + I T               ++
Sbjct: 591 LFFSSRGQVYKEKVWRLPMAAPNARGKALINILPMEQGERITTIMPLPEDESSWSELDVM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS 674
             ++ GN    + S+ +   R G   +K+   E +  V      D V +     + + F 
Sbjct: 651 FATTGGNVRRNKLSDFVDVRRSGIIAMKLDEGESIVDVQIAKENDDVLLTAAGGQCIRFP 710

Query: 675 IDQIPE-MSRGK-GVRLQSYKDGGISDVICF----------------------------- 703
           +  +     R   GVR  +  DG     +                               
Sbjct: 711 VTDVRVFQGRTSMGVRGINLGDGDKLISLTILRHMDVNADERAAYLRRANAVRRGGVEDE 770

Query: 704 --KICEGLT-------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                E  T                    +  +   Y +  +        RGG G +   
Sbjct: 771 AGTDSEEATGAIELGEQRYVEMSANEQFVLTISENGYGKRTSSYEYRTTGRGGKGIVAMS 830

Query: 743 GFPRSGKFLSS 753
              R+GK ++S
Sbjct: 831 VNGRNGKLVAS 841



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSS-EEKMKLVVKVTG-DHVAVVG 665
           +   +L +S  G        E     R GK    + V+    K+     V   D + +V 
Sbjct: 795 NEQFVLTISENGYGKRTSSYEYRTTGRGGKGIVAMSVNGRNGKLVASFPVEDSDQIMLVT 854

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           +  +L+   ++ I    R  +GV + +  D      +     EG  
Sbjct: 855 DKGQLIRCPVEDIRIAGRSTQGVTVFNTSDDERVVSVEHLTDEGEQ 900


>gi|5817862|gb|AAD52968.1|AF167102_2 DNA gyrase alpha subunit [Acholeplasma laidlawii]
          Length = 824

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/764 (29%), Positives = 387/764 (50%), Gaps = 29/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +   + + +K V++   ++  +L YA+S I  RA+P+ +DG KPV RRI++ M E  
Sbjct: 1   MSENTDKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD S+YD++VR+AQPF  R PL+ G GNFG++DGD 
Sbjct: 61  MYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +++ +D++ V+F D Y+  + EP V PS++PNLL NG++GIAV
Sbjct: 121 AAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  A +DNP+I++ +L++Y+ GPDFPTGG I+     + ++Y  
Sbjct: 181 GMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYMKGPDFPTGGQIL-GITGLRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E    +  I+ TEIPYQV K+ LIE+IAE++  K I  + D+RDES
Sbjct: 240 GKGIIAVRAQHEIVETKNRTELII-TEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +P + + +++  + ++T F +NM  L     P+++ L   L  ++
Sbjct: 299 NRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVD-GQPRLLSLKDALTHYI 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           AH+ E++ RR+ F ++  + R+ IL+ L+       N+ +II   ++ +  +  +++ + 
Sbjct: 358 AHQIEIITRRTQFDLEKAEARMHILEALVKALNDVDNVIKIIKDAKHPEDARHNLIATYD 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            TE Q  +I  ++L+ L  LE  +I  E DNL  +  +   +L     +   I  E++++
Sbjct: 418 FTEIQARSIFTMQLQRLTGLEIDKIHEEADNLAHKITEYKQILGDEDLKIEIIKSELQDI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K+ +                   D     + +I  E   V ++N  +I+ +         
Sbjct: 478 KDKYDDPR-------MSEVNLYEDLDIDNEDLIPVEDTVVTVTNNPYIKRMNLDEYKLQN 530

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +S +   + D ++      T D  L  +  G+ + L    L SG    +   I  
Sbjct: 531 RGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVFKLKGYTLPSGSRQSKGVPIVN 590

Query: 593 LIDLNHNQD---IVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            ++    +      T   +D     L  V+ +G       +      + G   + +  ++
Sbjct: 591 YLNFQPGEKLASFTTIKDFDAEDHYLNFVTKRGIVKRTHINNYKNIRQNGIIAISLREDD 650

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++ L     G  H+ +   N K + F    I ++ R   GVR     D            
Sbjct: 651 ELLLTKSTNGHKHILLGASNGKAIHFLETDIRQIGRTATGVRGMDIPDDEEIVGFAVVDG 710

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                +      Y +  +     L   GG G        ++GK 
Sbjct: 711 IEDDILVITENRYGKPTSITEYRLQNTGGKGVKTLNVTHKNGKL 754



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 98/277 (35%), Gaps = 19/277 (6%)

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
           ++    ++ +       + + +       S + +   I   +        +  +     T
Sbjct: 551 AMTSTHDFHLFFTNLGRVFKLKGYTLPSGSRQSKGVPIVNYLNF------QPGEKLASFT 604

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           T  +    D           +   V  ++    ++++ +   + A+  +E D L +    
Sbjct: 605 TIKDFDAEDHYLN----FVTKRGIVKRTHINNYKNIRQN--GIIAISLREDDELLLTKST 658

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLV 616
           +    ILL +++GKA      ++         ++ + D+  +++IV   V D     +LV
Sbjct: 659 NGHKHILLGASNGKAIHFLETDIRQIGRTATGVRGM-DIPDDEEIVGFAVVDGIEDDILV 717

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENRKLLI 672
           ++          +E       GK    ++      K+K + KVT D  + VV      + 
Sbjct: 718 ITENRYGKPTSITEYRLQNTGGKGVKTLNVTHKNGKLKTLRKVTNDEDIIVVSHRGITIR 777

Query: 673 FSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
             IDQI +  R  +GVR+ + K       I     + 
Sbjct: 778 MPIDQISQTKRATQGVRIITLKGDQKVSTIAIVDHQD 814


>gi|298208790|ref|YP_003716969.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559]
 gi|83848717|gb|EAP86586.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559]
          Length = 848

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/763 (30%), Positives = 407/763 (53%), Gaps = 36/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+   ++ KK
Sbjct: 5   EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSSHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M ++A+ ++  +D+D VD    +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 KMRKIADDMMADIDKDTVDHALNFDDTIEEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   A ID+ +I +E L+E++  PDFPTGG I    + + E+++ GRG   +R 
Sbjct: 185 NLSEVVDGIHAYIDDSDIDVEGLMEHVKAPDFPTGGTIY-GYDGVREAFKTGRGRVVMRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  V E  +G  C+VVTEIPYQV K+ +I+K A+L+  K+I  +  IRDES  +   +++
Sbjct: 244 KA-VFEEVQGRECLVVTEIPYQVNKADMIKKTADLVNEKKIEGISAIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L     P+++ L  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNTLYKYTALQSSFSVNNIALV-NGRPEMLNLKDMIHHFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IA+IR     D+ +  ++ RF LTE Q  AI
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEAREKLMERFKLTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++SE D+L+   E +  +L+  +++   I  E++E+K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRSEYDDLMKTIEDLKDILDKKERRMQIIKDELQEIKDKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+       A      + MI  E + + IS+ G+I+              V   A 
Sbjct: 480 ---RRSVI---EYAGGDMSIEDMIPNEKVVITISHAGYIKRTPLTEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             +  D L+          ++  +  G+ + +    +  G    +  AIQ LI++  +  
Sbjct: 534 TTRNEDFLEDMFVGTNHQYMIFFTQKGRCFWMRVFEIPEGSKTSKGRAIQNLINIEPDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y ++  +++ + KG        +       G   + +  ++++   
Sbjct: 594 VKAFICTQDLKDEDYINSHYVIMATKKGQVKKTSLEQYSRPRINGINAITIKEDDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG--GISDVICFKICEGL 709
              TGD  + +  ++ K + F   +   M R   GVR     D        +        
Sbjct: 654 KLTTGDSEIMLAVKSGKCIRFEESKTRPMGRSASGVRGIRLADEKTDEVVGMVVVNNNDS 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +   Y +  +     +  RGG G        ++G+ ++
Sbjct: 714 DILVVSENGYGKRSSLEDYRMTNRGGKGVKTISVTSKTGELVA 756



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 5/106 (4%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGE 666
              +LVVS  G        +     R GK    +     + E + +      D + ++ +
Sbjct: 712 DSDILVVSENGYGKRSSLEDYRMTNRGGKGVKTISVTSKTGELVAIKNVTDDDDLMIINK 771

Query: 667 NRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTW 711
           +   +  S++ +  M R  +GVRL + K       +     +    
Sbjct: 772 SGIAIRLSVENLRVMGRATQGVRLINLKGDDAIAAVAKVKQDEDNV 817


>gi|307719918|ref|YP_003875450.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192]
 gi|306533643|gb|ADN03177.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192]
          Length = 809

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/758 (35%), Positives = 410/758 (54%), Gaps = 28/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++  V  V +   ++E YL YA+S I  RA+PD+RDG KPV RRI++AM EMGL     F
Sbjct: 4   LKGKVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKS RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP++ GQGNFG+IDGD  AA RYT
Sbjct: 64  KKSGRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++ ++AE +L+ ++++ VDF   Y+E   EP V P+  P LL NG SGIAVGMAT+IP
Sbjct: 124 EAKLHKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A  A+IDNPEI  + LL Y+ GPDFPTGG I+  ++ I  +Y  G+GG  V
Sbjct: 184 PHNLGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGG-IIFGKKGIRSAYLTGKGGVVV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR  +E +  G   IVVTEIPY V KS L+E++A L+  K+I  + +IRDES  +   +
Sbjct: 243 RARLSLETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   R + P +++  +F ++ ++T F +N   L  G  PQ + L  I++ +++HR+EV+
Sbjct: 303 VFELKRGVIPKVVINRLFSMTPLQTTFHVNALALV-GGKPQTLTLKEIIQHFISHRKEVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ + ++  + R  IL+GL IA  NIDE+IAII+        +  ++ RF L+E Q  
Sbjct: 362 TRRAQYDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRRFGLSERQAQ 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I  EL+  L   E++  LL S ++    +  E  E+ + +   
Sbjct: 422 AILDMRLQKLTSLETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLELAKEYGDE 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE-- 547
                RRT     +   +    + +I+KE + V++S  G I+ +   +        K   
Sbjct: 482 -----RRTEIV--AEEAEDLDIEDLIQKEDMVVLVSRDGLIKRMPVSAYRRQGRGGKGLM 534

Query: 548 ------GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHN 599
                  D +     A T D IL LS +GKAY L    +        G++I+ L+ L+ +
Sbjct: 535 GGKLSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVSQGKSIRSLVQLSPD 594

Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + +        ++   ++ ++++KG A  +    +     +G   + +   + +      
Sbjct: 595 EQVSAVVSVETFEEEREVFMITAKGLAKRLPVPALSNARTRGVIAIGLEKGDYLVDAFLT 654

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            G   V +V      L    ++   M R  +GV     + G         + EG   +  
Sbjct: 655 EGKGEVMIVTRRGHGLRCKEEEFRSMGRAARGVTAVKLEPGDEV-CGAVPVEEGKDLLLV 713

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +           RG  G +  K   R+G+  +
Sbjct: 714 TSGGYGKRVEFSQFTAHGRGTKGQIAYKVSARTGELAA 751



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 6/173 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
            + +  + A+  ++GD L  A        +++++  G           S       +   
Sbjct: 631 NARTRGVIAIGLEKGDYLVDAFLTEGKGEVMIVTRRGHGLRCKEEEFRSMGRAARGV-TA 689

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE-EKM 650
           + L    ++  A   +    LL+V+S G    VE S+  A+ R  KG+   KVS+   ++
Sbjct: 690 VKLEPGDEVCGAVPVEEGKDLLLVTSGGYGKRVEFSQFTAHGRGTKGQIAYKVSARTGEL 749

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
             V+ V   D V +V     ++  ++  I  + R   GV++ + +       +
Sbjct: 750 AAVLSVEAKDDVMIVTAQGNIIKLAVKDISVLGRQAAGVKVVNLEKPDYVVSV 802



 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 48/133 (36%), Gaps = 2/133 (1%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                RS+   +  ++A+  + GD +  A+       +LL+++ G    +      +   
Sbjct: 673 KEEEFRSMGRAARGVTAVKLEPGDEVCGAVPVEEGKDLLLVTSGGYGKRVEFSQFTAHGR 732

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTFLK 643
             +            ++      ++   +++V+++GN   +   +I        G   + 
Sbjct: 733 GTKGQIAYKVSARTGELAAVLSVEAKDDVMIVTAQGNIIKLAVKDISVLGRQAAGVKVVN 792

Query: 644 VSSEEKMKLVVKV 656
           +   + +  V +V
Sbjct: 793 LEKPDYVVSVDRV 805


>gi|313683205|ref|YP_004060943.1| DNA gyrase subunit a [Sulfuricurvum kujiense DSM 16994]
 gi|313156065|gb|ADR34743.1| DNA gyrase subunit A [Sulfuricurvum kujiense DSM 16994]
          Length = 830

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/765 (32%), Positives = 405/765 (52%), Gaps = 32/765 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ L    +  +++   L+  YL Y++S I  RA+PD+RDG KPVHRRI++AM ++ L  
Sbjct: 2   NDLLDNSEINDINIEDTLKSSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMDKLSLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           GA +KKSARIVG+VIG+ HPHGD SVYD+LVR+AQPF  R PL+ GQGNFG++DGD+AAA
Sbjct: 62  GAKYKKSARIVGDVIGQYHPHGDTSVYDALVRMAQPFAMRAPLVDGQGNFGSVDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT+ A  +L+ +++D VD  D Y+    EP V P++ PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEARMTRYAGELLKDLEKDTVDMVDNYDGTTQEPEVLPTRVPNLLINGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN  E+  A + L+DNP  S+  ++++I  PDFPTGG I   ++ I+++Y  GRG
Sbjct: 182 TNIPPHNPNEVLSALVHLVDNPNASLHDIMQFIKAPDFPTGGTIY-GKKGILDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             RVRA+  + E       IV+ E+PYQV K+RLIE IA+L+  K I  + +IRDES  +
Sbjct: 241 RIRVRAKTHI-EKKSNKDVIVIDELPYQVNKARLIETIADLVKDKFIEGISEIRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R    ++++ +++  ++MET F + + +    + P+V  L  +L  ++ HR
Sbjct: 300 GIRVVIELKRDAMSEIVLNNLYKSTNMETTFGI-IMLSVFNQEPRVFTLLEMLGHFINHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTE 425
           + V+ RR+ F ++    R  IL+GL  A  +I+ II +IR     +         F  + 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKKALDHIEAIIKLIRASADGETAKNGLIEEFGFSP 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I++EL  +L   E ++S+L S +     I  E  E+ E 
Sbjct: 419 IQAQAILDMRLQRLTGLERDKIENELKEILTHIEYLESILRSEEVLKGIIKEEFVELVEQ 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHS 537
           ++             ++         + +I  EP+ V IS+RG+I+ +            
Sbjct: 479 YNIPR--------VTDIEDNYDDINIEDLIPNEPMVVTISHRGYIKRVPLAAYEKQIRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               A+   + D ++     +T D ++ ++  G+ + L    +        G+A+  LI+
Sbjct: 531 KGKVAVTTYDDDFIEKFYTCNTHDTLMFVTDRGQLHWLKVYKIPEGSRTAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I +      +D    L+  +  G       +E       G   + +  ++ +  
Sbjct: 591 LEADEKIRSIIPTTDFDEKKSLVFFTQNGIVKRTALNEFSNIRSNGVRAIVLDEDDALIT 650

Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEG 708
               T +  ++ +V +  + + F ID+  +  R  +GVR   +K +G +         + 
Sbjct: 651 AHIATEETKYLFIVTKFAQCIKFEIDKTRDQGRSTRGVRGIKFKIEGDVVVDANIIKSDE 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLS 752
              +  + +   +        L  R G G +  K   ++G   + 
Sbjct: 711 EEILMVSEKGIGKRTTAEEYRLTNRAGSGVIAMKLNAKTGTTVVG 755



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 103/363 (28%), Gaps = 26/363 (7%)

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           +   + +   +L      +    +  VE+++   I    + +I     + +    +    
Sbjct: 447 ILTHIEYLESILRSEEVLKGIIKEEFVELVEQYNIPR--VTDIEDNYDDINIEDLIPNEP 504

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC--- 477
             +T +    I  + L +  K               +         +       +     
Sbjct: 505 MVVTISHRGYIKRVPLAAYEKQIRGGKGKVAVTTYDDDFIEKFYTCNTHDTLMFVTDRGQ 564

Query: 478 --EIREVKEIFSKSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
              ++  K      T  G+        E     ++ +     +++   V  +  G ++  
Sbjct: 565 LHWLKVYKIPEGSRTAKGKAVVNLINLEADEKIRSIIPTTDFDEKKSLVFFTQNGIVKRT 624

Query: 534 ------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
                    S  + A+   E D+L  A  A    + L + T          +    +G  
Sbjct: 625 ALNEFSNIRSNGVRAIVLDEDDALITAHIATEETKYLFIVTKFAQCIKFEIDKTRDQGRS 684

Query: 588 EAIQLLIDLNHNQDIV--TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLK 643
                 I      D+V     +     ++L+VS KG        E     R   G   +K
Sbjct: 685 TRGVRGIKFKIEGDVVVDANIIKSDEEEILMVSEKGIGKRTTAEEYRLTNRAGSGVIAMK 744

Query: 644 V--SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           +   +   +   V V     +  + +  K++   +  I +  R   GV +     G    
Sbjct: 745 LNAKTGTTVVGCVMVDETMDLMALTKAGKMIRVDMQTIAKSGRNTSGVYIVK---GDDVA 801

Query: 700 VIC 702
            I 
Sbjct: 802 SIS 804


>gi|114327659|ref|YP_744816.1| DNA topoisomerase IV subunit A [Granulibacter bethesdensis CGDNIH1]
 gi|114315833|gb|ABI61893.1| topoisomerase IV subunit A [Granulibacter bethesdensis CGDNIH1]
          Length = 739

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/745 (52%), Positives = 530/745 (71%), Gaps = 8/745 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  + ++   V+   L  AL ERYLAYALSTI  R++PD+RDG KPVHRR+I+AM ++ 
Sbjct: 1   MNMPDDMI-GRVEDTRLADALSERYLAYALSTIMARSLPDVRDGLKPVHRRLIYAMHQLR 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD  A FKK ARIVG+VIGK HPHGD + Y++LVRLAQ F  RYPL+ GQGNFGNIDGD 
Sbjct: 60  LDPDAGFKKCARIVGDVIGKYHPHGDSAAYEALVRLAQDFASRYPLVDGQGNFGNIDGDG 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAAYRYTEAR+T+VA  +L+G+D+DAVD R TYN E+ EP V P+ FPNLLANG +GIAV
Sbjct: 120 AAAYRYTEARLTEVARTMLEGIDDDAVDLRPTYNAEEVEPAVLPAAFPNLLANGAAGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN  ++C+AALALI+NP+     LL+++ GPDFPTGGI+VE R S++++Y  
Sbjct: 180 GMATSIPPHNAGQVCDAALALIENPQADTAMLLDHLKGPDFPTGGILVEDRASMLQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFRVRARW  E+   GSW I++TEIPYQVQK+RLIE++A L+  K++PLL DIRDES
Sbjct: 240 GRGGFRVRARWHKEDGRLGSWRIIITEIPYQVQKARLIEQVAALMEEKKLPLLADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            E VRIVL PK+R++ PD+LME++F  + +E+RFPLNMNVL   R P+VM +  +L++WL
Sbjct: 300 TETVRIVLEPKSRTIAPDVLMETMFRATALESRFPLNMNVLDATRTPRVMGVKEVLRQWL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HR EVL RRS+ R+ +IDRR+EIL G L+ YLN+DE+I I+R ED+PK  +++ FSLT+
Sbjct: 360 DHRHEVLIRRSTHRLASIDRRLEILDGFLLVYLNLDEVIRIVREEDEPKAALIAAFSLTD 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +++LN+RLRSLRKLEE +I+ E   L  E++ +D+LL S   +W +IA E+  V++ 
Sbjct: 420 MQAESVLNMRLRSLRKLEEMEIRREHAKLSKERKDLDALLKSEPLRWKRIAHEVAAVRDQ 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F  S  LG RRT       A      +A +E+EPITV++S +GW+R+LK H  D   L F
Sbjct: 480 FG-SGKLGDRRTDIA-GPPATVEVAAEAFVEREPITVILSEKGWMRALKGHIADTVELRF 537

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           KEGD+L+ AL   TTDR+ LL+T+GKAYTL A +L  GRG G+ ++LL    +  D++  
Sbjct: 538 KEGDALRFALPCETTDRLCLLATNGKAYTLKAADLPRGRGDGQPVRLLAGFGNEDDVIAL 597

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
            V     + L+VSS G  F++  ++++A  R G+  L V   E+    V   GDHVAV+ 
Sbjct: 598 LVPKEEARYLLVSSAGRGFVIRGADLLAEKRTGRQALNVKPGEEAAFCVPAEGDHVAVIS 657

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           E+RKLL+F ++Q+PEM+RG GV L   K G   D++   +  GL+W+    +   R E D
Sbjct: 658 ESRKLLVFPLEQVPEMARGAGVILN--KGGAPRDIMVLTLAHGLSWMSGEKQ---RVERD 712

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  WLG RG  G + P GFP+SG+F
Sbjct: 713 LSYWLGARGQSGKVPPNGFPKSGRF 737


>gi|291561639|emb|CBL40438.1| DNA gyrase subunit A [butyrate-producing bacterium SS3/4]
          Length = 840

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/756 (30%), Positives = 380/756 (50%), Gaps = 25/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  + L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M+E+        +K
Sbjct: 7   DKIHEIDLKKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMAELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG+IDGD AAA RYTEA
Sbjct: 67  SARIVGDTMGKYHPHGDSSIYGALVNMAQRWSMRYMLVDGHGNFGSIDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  + +D VDF   ++E + EP V PS+FPNLL NG +GIAVGMAT+IP H
Sbjct: 127 RLSKISVEMLADIYKDTVDFIPNFDETEKEPTVLPSRFPNLLVNGGTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      + S+E++L+ I GPDFPTG  I+     I E+YR GRG 
Sbjct: 187 NLREVIAAVVKIIDNQVEEGRQTSMEEVLQIIKGPDFPTGAEIL-GTRGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E    G   I+VTE+PY V K+RLIEKIAEL+  K+I  +  I DES  + 
Sbjct: 246 IRVRAVTNIETAPNGKSHIIVTELPYLVNKARLIEKIAELVKTKKIDGITGITDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++L+  +   + ++  F + M  L     P+V+ +  +L+ +L H++
Sbjct: 306 IRINIELRRDVNANVLLNQLLKHTQLQDSFGVIMLALV-NNEPKVLNILQMLEYYLDHQK 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
           +V+ RR+ + +   + R  IL+GLL A  +IDE+I IIR            + RF LT+ 
Sbjct: 365 DVVTRRTKYDLNKAEERAHILEGLLKALDHIDEVIRIIRGSANVAEAKRVLMERFELTDP 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L A+  ++ ++L    +    I  EI  + E +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLENEYKELEAKIAELRAILADENKLLGVIKKEILVISEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS---VDLSAL 543
                  RR     E   + +  +           +    R  + + KS +     +  +
Sbjct: 485 GDD----RRTKIGFEDDMSVEDLISDDDTVIAMTNLGYIKRMSVDNFKSQNRGGKGIKGM 540

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQD 601
              + D ++  L       I+  +  G+ Y + A  +        G AI  L+ L   + 
Sbjct: 541 QTIDEDFIEDLLMTTNHHYIMFFTNTGRCYRIKAYEIPEAGRTARGTAIVNLLQLQPGEK 600

Query: 602 IVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +  A      D    L + +  G        E     + G   + +   +++  V     
Sbjct: 601 VTAAIPMREIDDDKYLFMATKGGMVKKTRMCEYSNMRKTGLQAILLREGDELIEVKVTDN 660

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            + + +  +    + F         R   GV      +G     +     +G   + ++ 
Sbjct: 661 TEDIFLATKFGMSIRFKETDARITGRVSYGVIGMKLDEGDEVIGMQMA-SQGEYMLVASE 719

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + Y +        L  RGG G L      ++G  + 
Sbjct: 720 KGYGKRTRISEFKLQLRGGKGLLCYNVTEKTGNLVG 755



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 64/210 (30%), Gaps = 6/210 (2%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
            +       +       ++               L A+  +EGD L        T+ I L
Sbjct: 607 MREIDDDKYLFMATKGGMVKKTRMCEYSNMRKTGLQAILLREGDELIEVKVTDNTEDIFL 666

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
            +  G +      +          +  +  L+   +++   +      +LV S KG    
Sbjct: 667 ATKFGMSIRFKETDARITGRVSYGVIGM-KLDEGDEVIGMQMASQGEYMLVASEKGYGKR 725

Query: 626 VEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM 681
              SE     R GK  L  +  EK   +  +  +  G  + ++     L+   +D I  +
Sbjct: 726 TRISEFKLQLRGGKGLLCYNVTEKTGNLVGMKLLDDGRDIMLITNEGILIRMGVDDISII 785

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            R   GV+L S        V         +
Sbjct: 786 GRNTSGVKLMSIDADSDVRVASIAKVRESS 815


>gi|239616429|ref|YP_002939751.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505260|gb|ACR78747.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 812

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/755 (30%), Positives = 379/755 (50%), Gaps = 16/755 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E + + S+   +   Y+ Y++S I  RAIPD+RDG KPV R+I+  M E+GL    ++
Sbjct: 1   MPEEIISRSINDEMITSYMLYSMSVIVGRAIPDVRDGLKPVQRKILFGMLELGLRHNQSY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD ++YD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKFHPHGDMAIYDALVRMAQPFSMRYPLIQGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM ++AE +L  +D++ V     ++    EP V P+K PNLL NG SGIAVGM T+IP
Sbjct: 121 EARMQRLAEELLADIDKNTVKMIPNFDGSLIEPEVLPAKAPNLLMNGASGIAVGMMTNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ EA  ALIDNP+ +IE+L+EY+ GPDFPTGG I+  R+ I + Y  GRG   V
Sbjct: 181 PHNLSELVEALTALIDNPDATIEELMEYVKGPDFPTGG-IIMGRDGIKKMYETGRGRMVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R    +EE   G   IV++EIPY V K+ LI++IA +    R   + ++RDES +    V
Sbjct: 240 RGVAEIEEAKGG-TRIVISEIPYGVSKADLIQQIANVAQNVRDIQVRNVRDESDKRGLRV 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP++++  ++  + ++T F  +M V+   + P++M L  I + ++ HR EV+
Sbjct: 299 VIELKRGADPNVVLNLLYKHTQLQTTFGAHMLVIDEKKRPKLMNLKEIFQAFIKHRYEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVD 429
            RR+ + ++   ++  IL+GL  A   ID ++ IIRN    +     +     +T  Q  
Sbjct: 359 KRRTEYELEQASKKAHILEGLTKASRAIDTVVDIIRNSKNIQEASVNLQETLEITPEQSQ 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RL  L  LE  ++ +E   L+ + ++   +L+  K  +  I  E++E++  +  +
Sbjct: 419 AILEMRLGKLTALEIDKLVTEYAELVEKIKEYREILSDDKNIYQIIKKELQELEAQYGDA 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-SVDLSALHFKEG 548
                      + +  D     + ++       + +        +      +  +   + 
Sbjct: 479 RRTKISIDGNTDFNVEDVIPDDEVVVTVTKKGYIKATPLEDYRKQGRGGKGIRGVKTTDA 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAF 606
           D +   +      + +++++ GKAY +    L        G+ +   + +  ++ +    
Sbjct: 539 DFVTNVVSTTRLSKTVVITSKGKAYFINNYELECTSRSSRGKLLANYVKIEPDETVQAVL 598

Query: 607 VYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
                  +   L++ + KG          I +   G   + ++  + +      T +   
Sbjct: 599 SVKREEVANKHLIITTRKGKIKRTPFEAFINSRTSGIKAITLNEGDSVVDAGISTSEEET 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRS 718
           + +      ++ F I QI  M R   GV+  + + D  +         +      +  R 
Sbjct: 659 IIISTRKGMVIRFPISQIRPMGRTAAGVKAMALRGDDEVVSATIVLPVDERYLFTATERG 718

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +           R G+G     G  R+G  + S
Sbjct: 719 VGKRTPLSEYRPQHRAGMGVKNIYGLERTGYVVGS 753



 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 6/155 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSS 619
           + I++ +  G     P   +         ++ +     ++ +    V       L   + 
Sbjct: 657 ETIIISTRKGMVIRFPISQIRPMGRTAAGVKAMALRGDDEVVSATIVLPVDERYLFTATE 716

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSI 675
           +G       SE     R G     +   E+   VV        D + V+ +N   +    
Sbjct: 717 RGVGKRTPLSEYRPQHRAGMGVKNIYGLERTGYVVGSLVVTNEDEIIVITKNGMSIRIPA 776

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             I    R  KGV++   +D      +   + +  
Sbjct: 777 ADIRPTGRVTKGVKVVELRDDDTVASLAVVVDQAE 811


>gi|159901139|ref|YP_001547386.1| DNA gyrase subunit A [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894178|gb|ABX07258.1| DNA gyrase, A subunit [Herpetosiphon aurantiacus ATCC 23779]
          Length = 827

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/756 (32%), Positives = 402/756 (53%), Gaps = 30/756 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK V++   +   YL YA+S I  RA+PD RDG KPV RRI++AM   GL     + K A
Sbjct: 6   VKPVAIVDEMRTAYLDYAMSVIVSRALPDARDGLKPVQRRILYAMFREGLLHNVRYSKCA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+ K HPHGD SVYD+LVRLAQP+  RYPL+ GQGNFG++DGD+AAAYRYTEAR+
Sbjct: 66  GVVGEVLKKYHPHGDASVYDALVRLAQPWNMRYPLVDGQGNFGSVDGDAAAAYRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++AE +L+ +D D V+F   ++    EP+V P++ PNLL NG++GIAVGMAT+IP HN+
Sbjct: 126 KEIAEELLRDIDRDTVNFGPNFDGGYQEPLVLPARLPNLLLNGSAGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+    L+DNP+ ++E L+++I GPDFPTGG I+   E I+ +Y  GRG   +RA+ 
Sbjct: 186 GELCDGIGYLVDNPDATVEDLIKFIPGPDFPTGGSIL-GTEGIISAYSSGRGRILIRAKA 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE  RG++ IVVTE+PYQV K+RLIE+IAEL+  KRI  + D+RDES      ++   
Sbjct: 245 HIEEAARGAFHIVVTELPYQVNKARLIERIAELVKDKRIEGIRDVRDESDRSGIRMVIIL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   P  ++  +F  + M+T F  NM  L   G+ P+ + L   L+E++ HR+ V+ RR
Sbjct: 305 KQDAQPKKVLNHLFKYTSMQTTFGANMLALVEDGKQPRTLSLKKALQEYIEHRQIVIRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAIL 432
           +   +     R  IL+GL IA   +DE+IA IR     +     ++  F L+E Q  AIL
Sbjct: 365 TEHDLAKAKARAHILEGLKIALDQLDEVIATIRASRTAETARSNLMKNFKLSELQSQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++LR L  LE  +I+ E   +L     ++ +L+  ++ +  I  ++ E+KE +      
Sbjct: 425 EMQLRRLAGLERKKIEDEYKEVLGTIADLEDILSKPERVFKIIKDDVAELKEKYGD---- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALH 544
             RR+     + A      + +I    + V +++RG+I+ L   +          +  + 
Sbjct: 481 -VRRSRII--ADATGDISTEDLIPDMNVLVTVTDRGYIKKLPGDTYRVQNRGGRGIKGMT 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
            KE D +   L  +T + +L  +  GK Y L    +       +   +  LI L   + +
Sbjct: 538 TKEDDVVAHLLMCNTLNDLLFFTNRGKVYQLKVHEVPDASRTAKGLPLVNLISLEPGELV 597

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +      +D    L++ + KG     + SE  +    G   + + + ++++ V    GD
Sbjct: 598 TSLIAVPDFDDGEYLVMTTVKGRIKRTKLSEYSSVRSNGLIAIGLDTGDELRWVKTSNGD 657

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +  ++ + + FS  ++  M R   GV             +     +    +     
Sbjct: 658 EDILMTTQHGQTIRFSQAEVRPMGRPASGVIGIKMSAKDQVVGMDLVRPDS-QLLVITSH 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +  +     +  R   G +  +   + G  +++
Sbjct: 717 GMGKRTDLEDYPVKGRATQGVITMRL--KPGDIIAA 750



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 72/204 (35%), Gaps = 11/204 (5%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
              +     V+ + +G I+  K           L A+    GD L+    ++  + IL+ 
Sbjct: 604 PDFDDGEYLVMTTVKGRIKRTKLSEYSSVRSNGLIAIGLDTGDELRWVKTSNGDEDILMT 663

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G+        +        +  + I ++    +V   +     +LLV++S G     
Sbjct: 664 TQHGQTIRFSQAEVRPMGRPA-SGVIGIKMSAKDQVVGMDLVRPDSQLLVITSHGMGKRT 722

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSR 683
           +  +     R   G   +++   + +   + +T   +   +  N  ++    D+I +  R
Sbjct: 723 DLEDYPVKGRATQGVITMRLKPGDIIAAALVLTDSDIVTTITRNGVVMRTRADKISKYGR 782

Query: 684 G-KGVRLQSYKDGGISDVICFKIC 706
             +GV + +     +   +  +  
Sbjct: 783 TTQGVTVINLDKKDLVAAVSAEPP 806



 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 48/145 (33%), Gaps = 3/145 (2%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +  ++  +    +  ++  +R +   +  +  +     D +          ++L++++ G
Sbjct: 658 EDILMTTQHGQTIRFSQAEVRPMGRPASGVIGIKMSAKDQVVGMDLVRPDSQLLVITSHG 717

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                   +        + +  +  L     I  A V   +  +  ++  G        +
Sbjct: 718 MGKRTDLEDYPVKGRATQGVITMR-LKPGDIIAAALVLTDSDIVTTITRNGVVMRTRADK 776

Query: 631 IIA--NTRKGKTFLKVSSEEKMKLV 653
           I     T +G T + +  ++ +  V
Sbjct: 777 ISKYGRTTQGVTVINLDKKDLVAAV 801


>gi|257455190|ref|ZP_05620425.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60]
 gi|257447152|gb|EEV22160.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60]
          Length = 937

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/828 (28%), Positives = 396/828 (47%), Gaps = 88/828 (10%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  ++V  + +   L++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  DF   
Sbjct: 1   MSTDSVSPIGIVDELKQSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELSNDFNKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY LI GQGNFG++D D AAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDTAVYDAIVRLAQPFSMRYMLIDGQGNFGSVDDDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM ++   +L  +D+D VD+   Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMQKLTHQMLGDLDKDTVDWEPNYDGSEQMPSVMPARIPNLLVNGATGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  D+P IS E L+++I GPDFPTGG I+  R  IV++YR G+G   
Sbjct: 181 APHNLTEVINACLAYADDPHISGEMLMQHITGPDFPTGG-IIYGRSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R ++ +E +           IV TEIPYQ  K++LIEKIAEL+  K++  + +IRDES 
Sbjct: 240 LRGKYHIEPMSETGANKERERIVFTEIPYQTNKAKLIEKIAELVRDKKLEGISEIRDESD 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   +     R  + ++++ ++F+ + +E+ F +NM  L     P++M L  ++  ++ 
Sbjct: 300 KDGMRIAIDLRRGENAEVIVNNLFIQTPLESSFSINMVALD-EGQPKIMTLRDLIAAFVR 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------- 415
           HR+EV+ RR+ F ++    R  +L+GL IA  NID II  I+     +            
Sbjct: 359 HRQEVVTRRTIFELKKAQARGHLLEGLTIALANIDGIIDTIKASANRQEARDNLLTHTWQ 418

Query: 416 ---------------------------------VMVSRFSLTENQVDAILNLRLRSLRKL 442
                                                 + L+ +QV+AIL+++L  L  L
Sbjct: 419 SGGVIAMLEAAGSHSIRPDVIEGEDLKAPYGLIDDNQHYRLSPDQVNAILDMQLHRLTGL 478

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E+ +++ E   +LA   ++ S+L++  Q    I  E+ +++E F  +       +     
Sbjct: 479 EQDKLQQEFKEILALIAQLQSILDNFDQLMQVIKDELIQIREDFGDARKTQIVDSRSDFS 538

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                +     +                 + K      SA   K  D +   +   T + 
Sbjct: 539 RADLISEQTVVLTVSRTGYAKTQPISDYIAQKRGGKGKSATAMKADDVIDHMVVTSTHNN 598

Query: 563 ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY------DSTCKL 614
           +++ +  G+ + L    +   S    G  +  LI L+ ++ +            +    +
Sbjct: 599 VMIFTDRGRVFGLQVFEVPIASRGSRGRPMVNLIALDADEKVTAILPVTEDAKQNDNSYV 658

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIF 673
              ++ G    V+ S+       G   ++++  + +  V    GD  + +     K + F
Sbjct: 659 FFATASGMVKRVQLSQFKNLRANGLRAVELNDGDNLIGVAITDGDQDIMLFSNEGKAIRF 718

Query: 674 SIDQIPEMSR-GKGVRLQS---YKDGGISDVICFKI------------------------ 705
           +  +I  M R  KGVR        + GI D                              
Sbjct: 719 NESKIRAMGRTAKGVRGMRVTLLANQGIEDEDTELEDDSQDDQDNDSVVAVSRVVSLVVA 778

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    + +  R + +        +  RGG G +  K   R+G+ + +
Sbjct: 779 PQQGEILCACERGFGKRTPVSDFPVKGRGGKGIIAIKTTARNGELVQA 826



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 5/111 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVV 664
               ++L    +G       S+     R GK  + +     + E ++ +     D + ++
Sbjct: 779 PQQGEILCACERGFGKRTPVSDFPVKGRGGKGIIAIKTTARNGELVQALAVTDADDIVLI 838

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            +   L+   + QI +  R  +GV L           I          +D 
Sbjct: 839 SDAGTLVRTPVGQIAQTGRNAQGVTLIRISQDESLVSIALVEGGSEDELDE 889


>gi|146340928|ref|YP_001205976.1| DNA gyrase subunit A [Bradyrhizobium sp. ORS278]
 gi|146193734|emb|CAL77751.1| DNA gyrase, subunit A, type II topoisomerase [Bradyrhizobium sp.
           ORS278]
          Length = 916

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/854 (30%), Positives = 402/854 (47%), Gaps = 116/854 (13%)

Query: 6   ISNSNTLVE------ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           +S+             +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++
Sbjct: 1   MSDKEDEKPGEPGGPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            M E G ++   ++KSAR VG+VIGK HPHGDQSVY +LVR+AQ F  R PLI GQGNFG
Sbjct: 61  GMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYGALVRMAQDFSMRVPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD  AA RYTE+R+T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG
Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQSLLDDLDKDTVDFQPNYDSSEKEPSVLPAKFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +A +AL DNP +SI++L + I GPDFPTGGII+  R  I
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALTDNPALSIDELNQIIPGPDFPTGGIIL-GRAGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y  GRG   +R +  ++ + +    I++TEIPYQV K+ ++E+IAEL+  K+I  + 
Sbjct: 240 RSAYHTGRGSIVMRGKVTIDTIRKDREAILITEIPYQVNKASMVERIAELVREKKIEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  D   V+    R   PD+++  ++  + ++T F  NM  L  G  PQ M L  
Sbjct: 300 DLRDESDRDGFRVVVELKRDAVPDVVLNQLYKFTPLQTNFGANMVALD-GGRPQTMNLKD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---- 415
           +L+ ++A R +V+ RR+ F +     R  IL GL IA  NIDEII +IR    P      
Sbjct: 359 LLQVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTARET 418

Query: 416 -------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                           L+  Q  AIL+LRL+ L  L   +I  E
Sbjct: 419 LMSRDWPAQDVAAMITLIDDPRHRINPDGTARLSLEQAKAILDLRLQRLTALGREEISDE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           LD L  E      +L S  +  + +  E+  +K  F+       RRT   E     +   
Sbjct: 479 LDKLAVEIADYLDILRSRARVQDIVKTELSAIKAEFATP-----RRTVIAEQEGEME--- 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I++E + V +S+ G+ +          +      + +  +E D +     A T   
Sbjct: 531 DEDLIQREDMVVTVSHAGYTKRVPLSAYRAQRRGGKGRTGMQTREEDFVSRLFVASTHTP 590

Query: 563 ILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KL 614
           +L  S+ G+ Y      L      G G+A+  ++ L   + I T               +
Sbjct: 591 VLFFSSRGQVYKEKVWRLPIAAPNGRGKALINILPLEQGERITTIMPLPEDESSWANLDV 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  ++ GN    + S+ +   R G   +K+   E++  V   T  D V +     + + F
Sbjct: 651 MFATTGGNVRRNKLSDFVDVRRSGIIAMKLDEGEEIVNVQICTERDDVLLTAAGGQCIRF 710

Query: 674 SIDQIPE-MSRGK-GVRLQSYKDGGISDVICFK--------------------------- 704
            +  +     R   GVR  +  +G     +                              
Sbjct: 711 PVTDVRVFTGRTSMGVRGIALAEGDKLISLTILRHVETTSDERTAYLKMRRAMSGETAAE 770

Query: 705 -------------------------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                                      +    +  +   Y +  +        RGG G +
Sbjct: 771 EPVETEGEEAAAGAIQLSQERYVEMSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIV 830

Query: 740 VPKGFPRSGKFLSS 753
                 R+GK ++S
Sbjct: 831 AMSVNNRNGKLVAS 844



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSS-EEKMKLVVKVTG-DHVAVVG 665
               +L VS  G        E     R GK    + V++   K+     V   D + +V 
Sbjct: 798 QEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRNGKLVASFPVEDSDQIMLVT 857

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +  +L+   +D I    R  +GV + +  D      +
Sbjct: 858 DKGQLIRCPVDGIRIAGRSTQGVIVFNTADDEHVVSV 894


>gi|325846382|ref|ZP_08169351.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481566|gb|EGC84606.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 813

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/766 (32%), Positives = 419/766 (54%), Gaps = 32/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  N    +N+  V L   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M  +G
Sbjct: 1   MTEEN---YQNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD     +KSAR+VGEV+GK HPHGD ++YD+LVRLAQ F  RYPL +GQGNFG+IDGD 
Sbjct: 58  LDPNKPTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDD 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE +M+++A+ +L+ +++D VDF   ++EE+ EP V PS+FPNLL NG++GIAV
Sbjct: 118 AAAMRYTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ +  +A +A ++NPEIS+++L + I GPDFPTG  I+  +  I ++Y+ 
Sbjct: 178 GMATNMAPHNLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQIL-GKAGIKKAYKT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RA   +E   +    I+VTEIPYQV K+ LI+KIAE +  K++  + DIRDES
Sbjct: 237 GRGKLKLRAVARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++ +++  + +ET F +    L    VP+++ L  ++K ++
Sbjct: 297 DRKGMRIVIEVKRDANANIVLNNLYKQTQLETTFGIINLALVD-GVPKILDLKELIKYYV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H+++V+ RR+ F +    +R  I++GL+IA  NIDEII IIR+         +   +F 
Sbjct: 356 KHQKDVVRRRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEKFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q  AIL+++L+ L  LE  ++++E   L  + E   S+LN  ++  + I  EI E+
Sbjct: 416 LTDPQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTSILNDEEKLISVIEEEILEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE ++       RRT              + +IEKE + + +++ G+I+           
Sbjct: 476 KEKYAD-----DRRTKIVPDEGE---FDIEELIEKEDVLISLTHDGYIKRLPINTYKVQN 527

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                +SA + KE D ++  L  +T + +L  +  G+ Y+L    +     +  G+AI  
Sbjct: 528 RGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIPEASRQSRGQAIIN 587

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L+ ++ I         +   +L+  +  G     +        R G   + + + ++
Sbjct: 588 LISLSSDEKITDIMELSNLNEKSQLVFQTENGKIKKTDAELFTNIQRNGIIAISLENGDR 647

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  + ++     + V  +    + F+   I  M R  +GVR     +      +   + +
Sbjct: 648 LVSIRQIDKPCDIIVTTKKGMAIKFASSDIRSMGRNARGVRAIRLGEDDKVVSMNI-VED 706

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +      + +  +        RGG G    K   ++   +++
Sbjct: 707 EVYLVVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITEKTKDVVAT 752


>gi|254293712|ref|YP_003059735.1| DNA topoisomerase IV subunit A [Hirschia baltica ATCC 49814]
 gi|254042243|gb|ACT59038.1| DNA topoisomerase IV, A subunit [Hirschia baltica ATCC 49814]
          Length = 750

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/752 (51%), Positives = 525/752 (69%), Gaps = 10/752 (1%)

Query: 6   ISNS--NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+       +  +    +  AL +RYLAYALSTI  RA+PD+RDG KPVHRR+++AM  
Sbjct: 1   MSDEFKTDDQDNGIIEEPMSDALSKRYLAYALSTITSRALPDVRDGLKPVHRRLMYAMRL 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L+   AFKKSAR+VG+VIGK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LKLNPELAFKKSARVVGDVIGKYHPHGDASIYDALVRLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE+R+T  A+L+L+G+DE+AVDF++TY+  D EPVV  S FPNLL NG+SGI
Sbjct: 121 DSAAAMRYTESRLTPAAQLLLEGLDENAVDFKETYDGGDKEPVVLASGFPNLLCNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP HN  E  +A + LI+N   +   L++ + GPDFPTGG IVE  +SI+++Y
Sbjct: 181 AVGMATSIPPHNAAETIDACIHLIENKSATTADLVKIMPGPDFPTGGEIVEDEDSILKAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRGGFR+R +W  E++ RG W IVVTEIPYQVQKS+LIE++AELI  K+ PLL+D+ D
Sbjct: 241 ETGRGGFRMRCKWEKEDLPRGLWQIVVTEIPYQVQKSKLIERLAELIETKKAPLLDDVMD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAED+R+VL P+N+ +DPD+LM S++ +SD+E+RF LNMNVL    VP+VM L  +L+ 
Sbjct: 301 ESAEDIRVVLVPRNKLVDPDVLMASLYKMSDLESRFSLNMNVLDH-NVPRVMGLKQVLQC 359

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           +LAHR+EV+ RR+  R+  I+ R+ IL+G L AYLNIDE+I IIR ED PK  ++  F L
Sbjct: 360 YLAHRQEVIVRRAQHRLDKIEARLHILEGYLKAYLNIDEVIRIIRYEDHPKEELMKAFKL 419

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q DAILN+RLR+LRKLEE +I+ E D L  E++K+  L+ S  +QW ++  +++  +
Sbjct: 420 SEIQTDAILNMRLRALRKLEEIEIQGEHDKLTQERDKLVQLIGSEARQWTEVKRQLKIAR 479

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           E+F   +DLGRRR+ F      D     +AMI KEPITV++S  GWIR+LK H+  +  L
Sbjct: 480 EVFDPESDLGRRRSKFGVAVEIDADAALEAMIPKEPITVILSKMGWIRALKGHNQAMDKL 539

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FK+GD L   L   TTD+++LL++ GKA+T  A  L SGRGHGE I+L IDL  +++I+
Sbjct: 540 KFKDGDELAFTLECQTTDKVVLLASGGKAFTFAADKLPSGRGHGEPIRLSIDLPEDEEII 599

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
                 +  + +V S+ G  F+V E E+++  R GK               +V GD VAV
Sbjct: 600 ATITPKTGYRRVVASTAGYGFVVNEEELVSQKRGGKVIQNPPDGATFAFCPRVEGDMVAV 659

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKICEGLTWIDSAGRS 718
           +G+N+K+L F ++++PEM+RGKGV+LQ+YK     +  + D+  F   +G  W D+ GR 
Sbjct: 660 IGDNKKILFFPLEELPEMARGKGVKLQNYKQSGLINEQLMDICTFDSEDGFFWKDTGGR- 718

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            N S N+   WLGKR   G L PKGF R+GKF
Sbjct: 719 -NISLNEWRDWLGKRAAAGKLAPKGFNRTGKF 749


>gi|304321405|ref|YP_003855048.1| DNA topoisomerase IV subunit A [Parvularcula bermudensis HTCC2503]
 gi|303300307|gb|ADM09906.1| DNA topoisomerase IV subunit A [Parvularcula bermudensis HTCC2503]
          Length = 754

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/756 (50%), Positives = 522/756 (69%), Gaps = 14/756 (1%)

Query: 6   ISNSNTLVEEN------VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           ++   T   +       +    +  AL  RYLAYALSTI  RA+PD+RDG KPVHRRI++
Sbjct: 1   MAKRPTKTPDRPAGPETIIEEPMGEALSRRYLAYALSTITARALPDIRDGLKPVHRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM +M L  G +++KSA++ G+V+G  HPHGDQ++YD++VRL Q F  R PLI GQGNFG
Sbjct: 61  AMRQMRLGSGGSYRKSAKVAGQVMGDYHPHGDQAIYDAMVRLVQDFSVRIPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           NIDGD+AAA RYTE R+T+ AEL+L+G+D D VDFR+TY+ E  EPVV P+ FP+LLANG
Sbjct: 121 NIDGDNAAAMRYTECRLTEAAELLLEGIDNDTVDFRETYDGEGREPVVLPAAFPHLLANG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HNV E+ +A L LI  P    E LL Y+ GPD PTGG+ +ES++ +
Sbjct: 181 SSGIAVGMATNIPPHNVAELIDACLHLIKTPNARTETLLNYVKGPDLPTGGVCIESKDDL 240

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E+Y  GRGGFR+RARW  E++GRG + IVVTEIPYQVQKS+L+E+IA+LI  K++P+L 
Sbjct: 241 AEAYATGRGGFRIRARWETEDLGRGRYQIVVTEIPYQVQKSKLVERIADLIQTKKLPVLT 300

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDESAED+R+VL PK  SLDP+ +M +IF L+D+ETR  LN+NV+     P V  L  
Sbjct: 301 DVRDESAEDIRLVLEPKAGSLDPETVMAAIFKLTDLETRLSLNLNVIGADGAPGVFGLRD 360

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            L+ +L HRR+VL R + +R+  I  R+EIL G LIAYLN+DE+I IIR ED PK  +++
Sbjct: 361 CLQAFLDHRRDVLLRGTRYRLDKIAHRLEILDGFLIAYLNLDEVIRIIRYEDDPKAELMA 420

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L+E Q +AILN+RLRSLRKLEE ++K E  +L AE++ + +LL S   QW +IA ++
Sbjct: 421 TFDLSEIQTEAILNMRLRSLRKLEEMELKREHKDLKAEQKDLQALLKSEDIQWERIAGQL 480

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +E ++ F   +DLGRRRT   +    ++  L + + EKEP+TVVIS +GW+R+LK H  D
Sbjct: 481 KETRKSFDPRSDLGRRRTALSDAPITEEVDLDELI-EKEPVTVVISEKGWVRALKGHVED 539

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +++ +K+GD  +  L A TTD+++L+ST+G+ + L   +L  GRGHGE  +L++DL + 
Sbjct: 540 KASIKYKDGDQGRFVLPAMTTDKVILVSTNGRFFALDVKDLPGGRGHGEPFRLMVDLTNE 599

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
            D++  F+Y     LL+ SS G+   V E +++A TRKGK  L V++  + ++   +T  
Sbjct: 600 HDLIDVFLYQGDRTLLLASSAGHGLFVPEEDVLATTRKGKQVLNVAAGAEAQVCRLLTAA 659

Query: 658 ---GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
               D++A +G NRKLLIF    +P M +GKGV LQ   +G + D  CF   EGLTW D 
Sbjct: 660 PGPNDYLATIGSNRKLLIFPAGDVPVMVKGKGVVLQKITNGTLVDAKCFSPEEGLTWTDR 719

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           AGR    S  +   W+GKR   G L PKGFPR+ +F
Sbjct: 720 AGRQQ--SAEEWKEWVGKRAQAGKLPPKGFPRANRF 753


>gi|296392547|ref|YP_003657431.1| DNA gyrase subunit A [Segniliparus rotundus DSM 44985]
 gi|296179694|gb|ADG96600.1| DNA gyrase, A subunit [Segniliparus rotundus DSM 44985]
          Length = 826

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/767 (29%), Positives = 376/767 (49%), Gaps = 22/767 (2%)

Query: 6   ISN--SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +++    T   + ++ V L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI+HAM +
Sbjct: 1   MTDPTDPTPSRDRIEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAMQD 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      + KSAR V E +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+   
Sbjct: 61  QGFRPDRGYVKSARPVAEAMGNYHPHGDTAIYDALVRMAQPWSLRYPLVDGQGNFGSRGN 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+  +A  +++ +DE+ VDF   Y+ +  EP V P++ PNLL NG+ GI
Sbjct: 121 DGAAAMRYTEARLAPLAMEMVRDIDEETVDFVPNYDGKTEEPSVLPARIPNLLVNGSGGI 180

Query: 184 AVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+ +A          +   ++E + E + GPDFPT G ++   + +
Sbjct: 181 AVGMATNIPPHNLREVADAIFWALEHHDADEASTLEAVKEIVKGPDFPTAG-LIVGTDGV 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG  R+R    VEE  +G   +V+TE+PYQV    +I  IAE +   +I  + 
Sbjct: 240 HDAYTTGRGSIRMRGVVEVEEDSQGRAILVITELPYQVNPDNMITSIAEQVRDGKIAGIS 299

Query: 300 DIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            I DE S      ++    R     +++ +++  S ++T F  NM  +    VP+ + LD
Sbjct: 300 AIDDETSDRIGMRIVVTLKRDAVARVVLNNLYKHSQLQTNFGANMLAIVD-GVPRTLRLD 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KP 415
            IL+ ++AH+ EV+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR        + 
Sbjct: 359 QILRLYIAHQIEVIVRRTQYRLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARA 418

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++    + E Q DAIL ++LR L  LE  +I  EL  +         +L   ++Q   +
Sbjct: 419 GLMELLDVDEIQADAILAMQLRRLAALERQKIIDELAEIEEAIADYQDILARPERQRAIV 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E++E+ +                       A     +   E      +     RS K 
Sbjct: 479 RDELKEIVDRHGDERRTRIIAAEGEVRDEDLIAREDVVVTITETGYAKRTKTDLYRSQKR 538

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLL 593
               +     K+ D +       T D IL  +T G+ Y + A  L        G+ +  L
Sbjct: 539 GGKGVQGATLKQDDIVAHFFVCSTHDWILFFTTRGRVYRIKAYELPETSRAARGQHVANL 598

Query: 594 IDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + L  ++ I        Y+ +  L++ + +G     + +E  +N   G   + +  E+++
Sbjct: 599 LALQTDEKIAQVIHLQTYEDSPYLVLATKRGLTKKSKLTEFDSNRSGGLIAVNLRDEDEL 658

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
                  + D + +V E+ + + F  +   +  M R   GV    + +      +   + 
Sbjct: 659 VGAALCSSDDDLLLVSEHGQSIRFHANDEQLRPMGRATSGVLGMRFNEDDQLLAMNV-VR 717

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +G   + +    Y +        +  RGG G L  +   R G  + +
Sbjct: 718 DGAYLLVATSGGYAKRTALGEYPVQGRGGKGVLTVQYDRRRGGLVGA 764



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 76/216 (35%), Gaps = 12/216 (5%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTD 561
             +     E  P  V+ + RG  +  K    D +        + ++ D L  A    + D
Sbjct: 609 QVIHLQTYEDSPYLVLATKRGLTKKSKLTEFDSNRSGGLIAVNLRDEDELVGAALCSSDD 668

Query: 562 RILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
            +LL+S  G++    A +      G   +  L +  N +  ++   V      LLV +S 
Sbjct: 669 DLLLVSEHGQSIRFHANDEQLRPMGRATSGVLGMRFNEDDQLLAMNVVRDGAYLLVATSG 728

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSID 676
           G A      E     R GK  L V  + +   +   V V  D  +  + +   ++     
Sbjct: 729 GYAKRTALGEYPVQGRGGKGVLTVQYDRRRGGLVGAVIVDDDTELYAITQGGGVIRTDAR 788

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           Q+    R  KGVRL +  +G     +     +    
Sbjct: 789 QVRRAGRQTKGVRLMNLGEGDRLIAVARNDEDSAEV 824


>gi|256545955|ref|ZP_05473310.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170]
 gi|256398377|gb|EEU11999.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170]
          Length = 813

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/762 (33%), Positives = 412/762 (54%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
                +N+  V L   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD  
Sbjct: 2   TEESYKNIIEVDLEKQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              +KSAR+VGEV+GK HPHGD ++YD+LVRLAQ F  RYPL SGQGNFG+IDGD AAA 
Sbjct: 62  KPTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLASGQGNFGSIDGDDAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE +M+++A+ +L+ +++D VDF   ++EE+ EP V PS+FPNLL NG++GIAVGMAT
Sbjct: 122 RYTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           ++  HN+ +  +A +A + NPEISI++L E I GPDFPTG  I+  +  I ++Y+ GRG 
Sbjct: 182 NMAPHNLGDSIDACIAYMKNPEISIKELAEIIKGPDFPTGAQIL-GKSGIKKAYKTGRGK 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++RA   +E   +    I+VTEIPYQV K+ LI+KIAE +  K++  + DIRDES    
Sbjct: 241 LKLRAVAKIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  + ++++ +++  + +ET F +    L    VP+++ L  ++K ++ H++
Sbjct: 301 MRIVIEVKRDANANIVLNNLYKQTQLETTFGIINLALVD-GVPKILDLKELIKYYIEHQK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTEN 426
            V+ RR+ F +    +R  I++GL+IA  NIDEII IIR+         +   RF LT+ 
Sbjct: 360 NVVRRRTRFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNERFGLTDL 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++L+ L  LE  ++++E   L  + E   S+LN  ++    I  EI E+KE F
Sbjct: 420 QSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTSILNDEEKLIGVIEEEILEIKEKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           +       RRT              + +IEKE + + +++ G+I+               
Sbjct: 480 AD-----DRRTKIVPDEGE---FDIEELIEKEDVLISLTHDGYIKRLPINTYKVQNRGGK 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +SA + KE D ++  L  +T + +L  +  G+ Y+L    +     +  G+AI  +I L
Sbjct: 532 GISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLNCYEIPEASRQSRGQAIINIISL 591

Query: 597 NHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             N+ I             +L+  + KG     +        R G   + +  ++++  +
Sbjct: 592 ATNEKITDIMELSELSDNSQLVFQTEKGKIKKTDAQLFTNIQRNGIIAISLEDDDRLVSI 651

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            ++     + V  +    + F+   I  M R  +GVR            +   + + +  
Sbjct: 652 RQIDHPCDIIVTTQKGMAIKFASSDIRSMGRNARGVRAIRLSKDDNVVSMNI-VEDEVYL 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +  +        RGG G    K   ++G  +++
Sbjct: 711 LVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITEKTGNVVAT 752



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L+ + ++V+  + +    LLVV++ G       +      R GK      +   +   
Sbjct: 690 IRLSKDDNVVSMNIVEDEVYLLVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITEKTGNV 749

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK--DGGISDVI 701
           +  +     D + +V     ++  S   I    R   GV+L++ +  +  I  V 
Sbjct: 750 VATLPANLDDDIMMVSLKGDMIRISARDISTTGRNTLGVKLKNLENTEDFIVSVT 804


>gi|256846673|ref|ZP_05552129.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2]
 gi|294784380|ref|ZP_06749671.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27]
 gi|256717893|gb|EEU31450.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2]
 gi|294487952|gb|EFG35307.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27]
          Length = 811

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/750 (32%), Positives = 396/750 (52%), Gaps = 14/750 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKK
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L+ +D++ +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP H
Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA+IDN +I I +L+ YI GPDFPTG II   R  I+E+Y+ GRG  +VR 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIID-GRAGIIEAYKTGRGKIKVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L 
Sbjct: 241 KIDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ R
Sbjct: 301 EVKKGEEPELVLNKLYKYTDLQTTFGVIMLSLV-NNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   + A  +++  +L    + +  +  E+ E+KE ++    
Sbjct: 420 LDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYNDKRR 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                     +        +  +       V        ++ K     +SAL+  E D  
Sbjct: 480 TKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQKRGGKGVSALNTIEDDFA 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI--QLLIDLNHNQDIVTAFV-- 607
           +  + A T D I++ +  GK Y + A  +              +I+L+  + +    V  
Sbjct: 540 EKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEKVRDTIVIK 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
            +    +++ ++  G        E       G   +K   ++ +  V  +     + + +
Sbjct: 600 EFSPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEILI 659

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
              +     F  D I    R  +GV+  + ++G                +      Y + 
Sbjct: 660 ATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDTVVSAMLIKNPETDILTITENGYGKR 719

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +        RGG G +  K   ++GK +S
Sbjct: 720 TSLDEYPQYNRGGKGVINLKVSEKTGKVVS 749



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 5/149 (3%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + DG         + +     + ++ +     +  +    + +    +L ++  G     
Sbjct: 661 THDGYCTRFLTDTIRATGRSTQGVKAITLREGDTVVSAMLIKNPETDILTITENGYGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
              E     R GK  + +   E   K+  V++V+ D  +  +  N  ++  SI +I  + 
Sbjct: 721 SLDEYPQYNRGGKGVINLKVSEKTGKVVSVLEVSEDEELMCITSNGIVIRTSISEISRIG 780

Query: 683 RG-KGVRLQSYKDGGISDVICFKICEGLT 710
           R  +GVR+    D      I     E   
Sbjct: 781 RATQGVRIMKVADDEKVAAITKIKKEEEL 809



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  L        +V+        +L+ ++S G   
Sbjct: 710 TITENGYGKRTSLDEYPQYNRGGKGVINLKVSEKTGKVVSVLEVSEDEELMCITSNGIVI 769

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
               SEI    R   G   +KV+ +EK+  + K+  +   
Sbjct: 770 RTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEEL 809


>gi|34763291|ref|ZP_00144249.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887039|gb|EAA24152.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 811

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/750 (32%), Positives = 397/750 (52%), Gaps = 14/750 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKK
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L+ +D++ +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP H
Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA+IDN +I I +L+ YI GPDFPTG II   R  I+E+Y+ GRG  +VR 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIID-GRAGIIEAYKTGRGKIKVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L 
Sbjct: 241 KIDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ R
Sbjct: 301 EVKKGEEPELVLNKLYKYTDLQTTFGVIMLSLV-NNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE+ +I +E   + A  +++  +L    + +  +  E+ E+KE ++    
Sbjct: 420 LDMKLQRLTGLEKEKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYNDKRR 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                     +        +  +       V        ++ K     +SAL+  E D  
Sbjct: 480 TKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQKRGGKGVSALNTIEDDFA 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI--QLLIDLNHNQDIVTAFV-- 607
           +  + A T D I++ +  GK Y + A  +              +I+L+  + +    V  
Sbjct: 540 EKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEKVRDTIVIK 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
            +    +++ ++  G        E       G   +K   ++ +  V  +     + + +
Sbjct: 600 EFSPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEILI 659

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
              +     F  D I    R  +GV+  + ++G                +      Y + 
Sbjct: 660 ATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDTVVSAMLIKNPETDILTITENGYGKR 719

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +        RGG G +  K   ++GK +S
Sbjct: 720 TSLDEYPQYNRGGKGVINLKVSEKTGKVVS 749



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 5/149 (3%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + DG         + +     + ++ +     +  +    + +    +L ++  G     
Sbjct: 661 THDGYCTRFLTDTIRATGRSTQGVKAITLREGDTVVSAMLIKNPETDILTITENGYGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
              E     R GK  + +   E   K+  V++V+ D  +  +  N  ++  SI +I  + 
Sbjct: 721 SLDEYPQYNRGGKGVINLKVSEKTGKVVSVLEVSEDEELMCITSNGIVIRTSISEISRIG 780

Query: 683 RG-KGVRLQSYKDGGISDVICFKICEGLT 710
           R  +GVR+    D      I     E   
Sbjct: 781 RATQGVRIMKVADDEKVAAITKIKKEEEL 809



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  L        +V+        +L+ ++S G   
Sbjct: 710 TITENGYGKRTSLDEYPQYNRGGKGVINLKVSEKTGKVVSVLEVSEDEELMCITSNGIVI 769

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
               SEI    R   G   +KV+ +EK+  + K+  +   
Sbjct: 770 RTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEEL 809


>gi|324999888|ref|ZP_08121000.1| DNA gyrase subunit A [Pseudonocardia sp. P1]
          Length = 836

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/763 (30%), Positives = 381/763 (49%), Gaps = 36/763 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V ++  ++  Y+ YA+S I  RA+P + DG KPVHRR++++M E G     +F K 
Sbjct: 20  RVEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRRVLYSMGENGFRPDRSFVKC 79

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPLI+GQGNFG+   D AAA RYTE R
Sbjct: 80  ARVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLITGQGNFGSRGNDPAAAMRYTECR 139

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++ +A  +LQ ++E+ VDF D Y+ +  EPVV PS+ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 140 LSPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLLINGSSGIAVGMATNIPPHN 199

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+       ++NP+ + ++    L+E I GPDFPT G ++  R+ I  +YR GRG  R
Sbjct: 200 LREVGAGVAWCLENPDATDDELLEALMERIKGPDFPTHG-LIVGRDGIESAYRTGRGSIR 258

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VE+  +G   +VVTE+PY V    LIE IA ++   +I  + +I DE S     
Sbjct: 259 MRAVVEVEDDAKGRTTLVVTELPYMVNPDNLIESIATMVRDGKIAGISEIVDESSDRIGM 318

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  + ++  F  NM  +    VP+ + LD I++ ++ H+ E
Sbjct: 319 RIVVTLKRDAVAKVVLNNLYKHTQLQHSFGANMLSIVD-GVPRTLRLDQIVRHYVRHQIE 377

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQ 427
           V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR                 + E Q
Sbjct: 378 VIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASATVDVARAGLIDLLTVDEIQ 437

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L  LE  +I  EL  +  E    + +L   ++Q   +  E+ E+ E   
Sbjct: 438 AQAILDMQLRRLAALERQKIVDELAEIEREIADYEDILTRPERQREIVRDELAEIVEQHG 497

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT              + +I  E + V I+  G+ +          K     
Sbjct: 498 D-----DRRTRIVGYDGD---VTDEDLIAVEDVVVTITRTGYAKRTKTDLYRAQKRGGKG 549

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     K+ D +       T D +L  +  G+ Y L A  L   +    G+ +  L+ L 
Sbjct: 550 VQGAQLKQDDIVNHFFVCSTHDWMLFFTNRGRVYRLKAYELPEANRTARGQHLANLLALQ 609

Query: 598 HNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            +++I              L++ +  G       ++  +N   G   + +  ++++   V
Sbjct: 610 PDEEIAQVMQIKDYQARPYLVLATRNGLVKKSRLTDFDSNRTGGLIGINLRDDDELVGAV 669

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT 710
             +G D + +V    + + F+     +  M R   GV    +  G     +     +   
Sbjct: 670 LCSGDDDLLLVSAEGQSIRFTATDDALRPMGRATSGVLGMRFNSGDKLLALGVIRPD-TY 728

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +    Y +        +  RGG G L  +   R G  + +
Sbjct: 729 LLVATTGGYAKRTPIEDYPVQGRGGKGVLTLQYDRRRGTLVGA 771



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 78/223 (34%), Gaps = 12/223 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKI 553
            +        +Q    +  P  V+ +  G ++  +    D +        + ++ D L  
Sbjct: 608 LQPDEEIAQVMQIKDYQARPYLVLATRNGLVKKSRLTDFDSNRTGGLIGINLRDDDELVG 667

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           A+     D +LL+S +G++    A +      G   +  L +  N    ++   V     
Sbjct: 668 AVLCSGDDDLLLVSAEGQSIRFTATDDALRPMGRATSGVLGMRFNSGDKLLALGVIRPDT 727

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENR 668
            LLV ++ G A      +     R GK  L +  + +   +   + V   D +  +    
Sbjct: 728 YLLVATTGGYAKRTPIEDYPVQGRGGKGVLTLQYDRRRGTLVGALIVGIDDELYAITSTG 787

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            ++  S  ++ +  R  KGVRL +  +      +     E   
Sbjct: 788 GVIRTSAREVRKAGRQTKGVRLMNLGESSTLLAVARNAEETEE 830


>gi|83311684|ref|YP_421948.1| DNA topoisomerase IV subunit A [Magnetospirillum magneticum AMB-1]
 gi|82946525|dbj|BAE51389.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 744

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/746 (51%), Positives = 532/746 (71%), Gaps = 8/746 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +   V  +++   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR++ AM ++ LD 
Sbjct: 2   TKPAVTGDIRDTPLAEALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAMRQLKLDP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              FKK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA
Sbjct: 62  SGGFKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQDFAVRYPLVEGQGNFGNIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++T++A  +++G+DED+VDFR TY+  + EPVV PS FPNLLANG++GIAVGMA
Sbjct: 122 MRYTEAKLTEIAAALMEGLDEDSVDFRPTYDGTEEEPVVMPSAFPNLLANGSAGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HN+ EIC+A   LI  P+  +++L+ ++ GPDFPTGG++VE++ +I E+YR G+G
Sbjct: 182 TSIPPHNIGEICDALDHLIAKPDCDVDELIAHMPGPDFPTGGVLVETQAAITEAYRTGKG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            FRVRA+W VE++  G + IV+TEIPYQVQK++LIEKIAEL+  K++PLL DIRDESAED
Sbjct: 242 AFRVRAKWAVEKLSHGLYQIVITEIPYQVQKAKLIEKIAELLSEKKLPLLADIRDESAED 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM----GRVPQVMPLDGILKEW 364
           +R+VL P+NR+++ +L+ME +F  +D+E+RF LNMNVL+        P VM L  +L+ +
Sbjct: 302 IRLVLEPRNRTVEAELVMEQLFRQTDLESRFSLNMNVLAPDAHGHLTPGVMNLKEVLRAF 361

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L HR  VL RR+ FR++ I +R+E+L+G L  Y ++D++I IIR  D+PK  ++  F L+
Sbjct: 362 LDHRMVVLERRARFRLEKIAKRLEVLEGFLKVYADLDKVIRIIRFADEPKAELIKTFKLS 421

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AILN+RLRSL KL+E +IK+E   L AEK  +++LL    ++W  IA +  E ++
Sbjct: 422 EVQAEAILNMRLRSLNKLQELEIKTEHAELSAEKADLEALLADEPRRWAAIAAQNDETRK 481

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            F  +T LG+RRT   +   A      +A +E+E IT+V+S +GWIR+LK HS    AL 
Sbjct: 482 AFGGATALGKRRTELGDAPSA-VVVPIEAYVEREAITMVLSEKGWIRALKGHSDAPEALK 540

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           FKEGD L   L A TTD+IL+ +TDG+ YT+    L SGRGHGE ++L+IDL  + DI  
Sbjct: 541 FKEGDQLGHLLKAWTTDKILVFATDGRFYTIGGDKLPSGRGHGEPLRLMIDLAGDVDIAA 600

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
             V+    KLLV ++    F+VEE+E++A TR GK  L  +  EK K  +   GD VAV+
Sbjct: 601 VMVHKPGRKLLVATNTDRGFVVEENEVLAQTRAGKMVLNCADGEKAKFCLPFEGDAVAVI 660

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           GENRKLL+F  ++IP ++RG+GV LQ Y+DGG++D+  F + +GLTW         R+E+
Sbjct: 661 GENRKLLVFMAEEIPVLTRGRGVILQKYRDGGMADIKVFTLAQGLTWNLGD---RVRTES 717

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DL  WLGKR  VG L P GFPR+ +F
Sbjct: 718 DLTPWLGKRASVGRLPPTGFPRNNRF 743


>gi|289579992|ref|YP_003478458.1| DNA gyrase subunit alpha [Natrialba magadii ATCC 43099]
 gi|289529545|gb|ADD03896.1| DNA gyrase, A subunit [Natrialba magadii ATCC 43099]
          Length = 846

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/772 (32%), Positives = 406/772 (52%), Gaps = 31/772 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D + +   +    V+ V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MSSD-VPDPTDVEARAVENVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMG+   ++ +KS+ IVGE +G  HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG+
Sbjct: 60  MHEMGVTSRSSHRKSSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM  V+E +L+ +D+D VDF   Y++   EP V PS FPNLL NG+
Sbjct: 120 MDGDPAAAPRYTEARMAAVSEELLEDIDKDTVDFSSNYDDRLQEPDVLPSAFPNLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGM+T+IP HN+ E+ +A + LID+P+ ++E L+E++ GPDFPTG  IV  R++I 
Sbjct: 180 SGIAVGMSTNIPPHNLGEVIDATIELIDDPDATVEDLMEHVKGPDFPTGANIV-GRDAIY 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y+ GRG  RVRA + VEE   G   IV+TE+PYQ  K+RL+E+IAE +    I  + D
Sbjct: 239 SAYKTGRGRIRVRAEFEVEEWKNGRERIVITELPYQENKARLVERIAEDVNEGDIEGISD 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   ++    R  + +++  +  + + +E  F +    L     PQV+ L   
Sbjct: 299 LRDESDRDGVRIVVECKRGANVEVVK-NKLLENHLEKTFGVINLALVD-GQPQVLSLKET 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           L+E++AHRREV+ RRS + +   + R  IL+G L A  N ++++ +IRN +         
Sbjct: 357 LEEYIAHRREVVRRRSEYDLAEAEDRAHILEGRLKAVENAEDVVDLIRNSETRDDAKAAL 416

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              +  +  Q   I+ ++L SL  +E  +I+ E +++ AE E++ S+L S ++    I  
Sbjct: 417 QEAYDFSAEQATHIVRMQLGSLTSMEAAEIEDEYEDVQAEIERLTSILESEQELLAVIKD 476

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K+ +        RRT+  E          + +I +E + VV++   +++ +    
Sbjct: 477 ELSEIKDEYDD-----DRRTSIIE---DQGTVTHEDLIPEEEVFVVMTEDDYVKRMPISQ 528

Query: 538 VDLSALH--------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HG 587
            D              KE D +     A+T D +L  +  GK Y L    +        G
Sbjct: 529 FDPQGRGGKGIIGADVKEDDRVATVFRANTHDYLLCFTNQGKVYQLKTYEIPEMGRTARG 588

Query: 588 EAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++   ++DL+  +DI      D       + + +  G       SE       G     +
Sbjct: 589 KSAVNILDLDPGEDITAIVDTDAFGDDEFVTMATRHGYVKRTAGSEFDNIRSTGIIAADL 648

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVI 701
              +++  V    G   + +  EN   + F  D++  M R  +GV     + D  ++ ++
Sbjct: 649 QEGDELVDVEVTDGTKDLVIASENGMTIRFDEDEVRAMGRNARGVNGIDLQGDDAVAGLV 708

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +    +      Y +           R G G +  K   R+G   ++
Sbjct: 709 ATDEGDEQDLLTVTQNGYGKRTPLSEYRTQSRYGKGLIDIKTGERNGPVTTA 760



 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 58/200 (29%), Gaps = 12/200 (6%)

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
             ++  +A     VK       D  R         +     +   + +     V+ S  G
Sbjct: 614 DDEFVTMATRHGYVKRTAGSEFDNIRSTGIIAADLQEGDELVDVEVTDGTKDLVIASENG 673

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIA----------LHAHTTDRILLLSTDGKAYTLPAG 578
                    V     + +  + + +                   +L ++ +G     P  
Sbjct: 674 MTIRFDEDEVRAMGRNARGVNGIDLQGDDAVAGLVATDEGDEQDLLTVTQNGYGKRTPLS 733

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK- 637
              +   +G+ +  +     N  + TA    +  +L+++S +G        EI    R  
Sbjct: 734 EYRTQSRYGKGLIDIKTGERNGPVTTAKAVSADDQLVMMSERGQIVRTRVDEISTVGRNT 793

Query: 638 -GKTFLKVSSEEKMKLVVKV 656
            G   + V   + +  V  V
Sbjct: 794 MGVIVMDVDDGDAVASVDVV 813


>gi|54021971|ref|YP_116213.1| DNA gyrase subunit A [Nocardia farcinica IFM 10152]
 gi|54013479|dbj|BAD54849.1| putative DNA gyrase A subunit [Nocardia farcinica IFM 10152]
          Length = 836

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/768 (28%), Positives = 367/768 (47%), Gaps = 23/768 (2%)

Query: 6   ISNSNTLVE---ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +++     E   + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM 
Sbjct: 1   MTDITLPPESAGDRVEPVDIQQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMY 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G      + KSAR V + +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 61  DNGYRPDRGYVKSARPVSDTMGNYHPHGDSAIYDTLVRMAQPWAMRYPLVDGQGNFGSRG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE R+T +A  +L+ +D + VDF   Y+ +  EPVV PS+ PN+L NG++G
Sbjct: 121 NDGAAAMRYTECRLTPLAMEMLREIDHETVDFIPNYDGKTQEPVVLPSRVPNMLMNGSNG 180

Query: 183 IAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN+ E+ EA          + E ++   +E I GPDFPT G ++   + 
Sbjct: 181 IAVGMATNIPPHNLTELAEAIYWALDNHDADEETTLAACMERIKGPDFPTAG-LIVGTQG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y  GRG  ++R    +EE  RG   IV+TE+PYQV     I  IAE +   +I  +
Sbjct: 240 IHDAYTTGRGSIKMRGVVEIEEDNRGRTTIVITELPYQVNTDNFINAIAEQVKDGKIAGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            DI DE S      ++    R     +++ +++  + ++T F  NM  +    VP+ + L
Sbjct: 300 ADIHDESSDRVGLRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
           D +++ ++ H+ +V+ RR+ + ++  + R  IL+GL+ A   +DE+IA+IR         
Sbjct: 359 DQMIRLYVNHQLDVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRRSANTDTAR 418

Query: 418 VSRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                   + E Q  AIL+++LR L  LE  +I  +L  + AE      +L+  ++Q   
Sbjct: 419 TGLMELLDIDEIQATAILDMQLRRLSALERQKIIDDLARIEAEIADYKDILDKPERQRAI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           +  E+ E+ E +                     A     +   E      +     RS K
Sbjct: 479 VRDELAEIVEKYGDERRTQIVSADGDVADEDLIAREDVVVTITETGYAKRTKTDLYRSQK 538

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +     K+ D +K      T D +L  +  G+ Y   A  L   +    G+ +  
Sbjct: 539 RGGKGVQGAGLKQDDIVKHFFVTSTHDWLLFFTNKGRVYRAKAYELPEANRTARGQHVAN 598

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+    ++ I        Y+    L++ +  G       S+  +N   G   + +   ++
Sbjct: 599 LLAFQPDEKIAQIIQIKTYEDAPYLVLATKNGLVKKSRLSDFDSNRSGGIVAVNLRDNDE 658

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           +   V  +  D + +V    + + FS     +  M R   GV+   +        +   +
Sbjct: 659 LVGAVLCSADDDLLLVSAQGQSIRFSATDEALRPMGRATSGVQGMRFNAEDELLSLNV-V 717

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             G   + +    Y +           RGG G L  +   R G  + +
Sbjct: 718 RPGTYLLVATSGGYAKRTAIEEYTAQGRGGKGVLTIQFDARRGTLVGA 765



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 12/216 (5%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH------AHTTD 561
             +Q    E  P  V+ +  G ++  +    D +        +L+              D
Sbjct: 610 QIIQIKTYEDAPYLVLATKNGLVKKSRLSDFDSNRSGGIVAVNLRDNDELVGAVLCSADD 669

Query: 562 RILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
            +LL+S  G++    A +      G   +    +  N   ++++  V      LLV +S 
Sbjct: 670 DLLLVSAQGQSIRFSATDEALRPMGRATSGVQGMRFNAEDELLSLNVVRPGTYLLVATSG 729

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVA-VVGENRKLLIFSID 676
           G A      E  A  R GK  L +  + +   +   + V  D     +     ++  + +
Sbjct: 730 GYAKRTAIEEYTAQGRGGKGVLTIQFDARRGTLVGALIVDDDDELYAITSGGGVIRTAAN 789

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           Q+ +  R  KGVRL +  +G     I     E    
Sbjct: 790 QVRKAGRQTKGVRLMNLGEGDTLLAIARNADEPDAV 825


>gi|88802494|ref|ZP_01118021.1| DNA gyrase A subunit [Polaribacter irgensii 23-P]
 gi|88781352|gb|EAR12530.1| DNA gyrase A subunit [Polaribacter irgensii 23-P]
          Length = 848

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/762 (31%), Positives = 403/762 (52%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    ++KK
Sbjct: 5   EKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY ++ GQGNFG++DGDS AA RYTE 
Sbjct: 65  SARIVGEVLGKFHPHGDTSVYDSMVRMAQSWSVRYMMVDGQGNFGSVDGDSPAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +++D VD R  +++   EPVV P++ PNLL NG SGIAVGMAT++  H
Sbjct: 125 RMQKISEDMLADIEKDTVDQRLNFDDTLHEPVVLPTRIPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA IDN EI I++L++YI  PDFPTGG I+   + + +++  GRG   +RA
Sbjct: 185 NLTEVINGTLAYIDNREIDIDELMQYITAPDFPTGG-IIYGYDGVKDAFHTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV  G  CI+V+EIPYQV K+ +I+K AEL+  K+I  + +IRDES  +   +++
Sbjct: 244 KSVIEEVK-GRECIIVSEIPYQVNKAEMIKKTAELVNEKKIEGISNIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  +F  + ++T F +N   L     P+ + L  ++  ++ HR EV+ R
Sbjct: 303 VLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVK-GRPEQLNLKQLIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ F +   + R  IL+GL+IA  NIDE+IA IR      + +  +++RF LTE Q  AI
Sbjct: 362 RTKFDLLKAEARAHILEGLIIASDNIDEVIATIRASQNADEAREKLIARFELTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D ++     +  +L +  +++  I  E+  +K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEFDAIMTTIVDLKDILANEPRRYEIIKGELAHIKDKYGD--- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RR+       A      + MI    + V ISN G+++                    
Sbjct: 479 --DRRSVI---EYAGGDMSIEDMIPDTKVVVTISNAGYLKRTNLEEYKVQNRGGRGQKGA 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             +  D L+          ++  +  GK + +    +  G  + +  A+Q LI++  +  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGKNTKGRAMQNLINIEQDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +    V        Y ++  +++ + KG        +       G   + +   +++   
Sbjct: 594 VKAFLVTQDLKDEAYINSHYVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEGDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
              TGD  V +  ++ K + F   +   M R   GVR  + +      +    + +    
Sbjct: 654 KLTTGDSQVMLALKSGKSIRFEEAKTRPMGRTASGVRGITLQHDKDEVIGMVAVNDMESN 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + + + +        +  RGG G        ++G  ++
Sbjct: 714 ILVVSEKGFGKRSKLEDYRITNRGGKGVKTLNISEKTGNLVA 755



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 73/204 (35%), Gaps = 6/204 (2%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              ++  +   V  ++       +++ ++   +   +   L+  L    +  +L L +  
Sbjct: 612 HYVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEGDEL-LEAKLTTGDSQVMLALKSGK 670

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A     GR       + +  + ++ I    V D    +LVVS KG     +  +
Sbjct: 671 SIRFEEAKTRPMGRTASGVRGITLQHDKDEVIGMVAVNDMESNILVVSEKGFGKRSKLED 730

Query: 631 IIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-K 685
                R GK    ++  EK   +  +  V   + + ++  +   +  +++ +  M R  +
Sbjct: 731 YRITNRGGKGVKTLNISEKTGNLVAIKNVDDSNDLMIINRSGLTIRMAVEDLRVMGRATQ 790

Query: 686 GVRLQSYKDGGISDVICFKICEGL 709
           GVRL + KD      +     E  
Sbjct: 791 GVRLINIKDNDSIAAVAKVAHEEE 814



 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 64/226 (28%), Gaps = 11/226 (4%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           + +  + +       ++   +K      S +Q        I  +           +  T 
Sbjct: 599 VTQDLKDEAYINSHYVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEGDELLEAKLTTG 658

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
             +V  A K+       E +   +  +  G       H  D         D         
Sbjct: 659 DSQVMLALKSGKSIRFEEAKTRPMGRTASGVRGITLQHDKDEVIGMVAVND--------- 709

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               IL++S  G        +       G+ ++ L       ++V     D +  L++++
Sbjct: 710 MESNILVVSEKGFGKRSKLEDYRITNRGGKGVKTLNISEKTGNLVAIKNVDDSNDLMIIN 769

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
             G    +   ++    R   G   + +   + +  V KV  +   
Sbjct: 770 RSGLTIRMAVEDLRVMGRATQGVRLINIKDNDSIAAVAKVAHEEEV 815


>gi|323699692|ref|ZP_08111604.1| DNA gyrase, A subunit [Desulfovibrio sp. ND132]
 gi|323459624|gb|EGB15489.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans ND132]
          Length = 815

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/747 (32%), Positives = 396/747 (53%), Gaps = 15/747 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   L++ YL Y+LS I  RAIPD+RDG KPVHRRI++AM ++G  +  A+KKSAR+V
Sbjct: 5   ITIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLGNYYNRAYKKSARVV 64

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+LVRLAQ F  R  L+ GQGNFG+IDGDSAAA RYTE RM ++
Sbjct: 65  GDVIGKYHPHGDSAVYDALVRLAQDFSMRDTLVDGQGNFGSIDGDSAAAMRYTEVRMARL 124

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
               L  ++++ VDF   Y+    EP V P+K PNLL NGT+GIAVGMAT+IP HN+ E+
Sbjct: 125 CSEFLGDIEKNTVDFAPNYDNTLQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLGEL 184

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            + ++ L+DNPE +IE L++ I GPDFPTGG I    + ++++Y  GRG  ++R    +E
Sbjct: 185 IDGSVHLLDNPECTIESLMKRIKGPDFPTGGTIFGG-QGLIDAYTTGRGSIKIRGVVELE 243

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E  +G    I++ EIPY + KS L+EKIA L+  K+I  + D+RDES      ++    R
Sbjct: 244 EARKGHKESIIIKEIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRKGIRIVLELKR 303

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++ S++  + +ET F +NM  +  G+ P ++ L  +L  +L HRREV+ RR+ F
Sbjct: 304 GAIADIIINSLYKFTPLETSFGINMMAVV-GKRPMLLNLKEVLGHFLEHRREVIIRRTKF 362

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLR 435
            +   ++RV IL+GL IA  NIDE++ +IR    P+      +SRFSL++ Q  AIL++R
Sbjct: 363 DLDKCEKRVHILEGLRIALDNIDEVVKLIRASKTPEEARDGLMSRFSLSDIQAKAILDMR 422

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  ++  EL  L+ + E   ++L++ +     I  E+ E+K  ++        
Sbjct: 423 LQKLTGLEHDKLLEELAELMKKIEYFKAILSNDEVLKGVIRDELNEIKTNYATPRKSELL 482

Query: 496 RTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           R     +   D    ++ +I       +  +      + K     ++ +   +GD +   
Sbjct: 483 RADLDSIDIEDLIPDEETVITLSRRGYIKRTPLSNYTAQKRGGKGIAGVQTGDGDFIHTF 542

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YD 609
           +       ++L +  GK + +    +  G  + +   +  L+ L+ ++ I T      + 
Sbjct: 543 MLTTNHQHLVLFTNFGKMFKIKVHQVPEGSRYAKGGHVNNLLPLDKDEHIATCLSLREFA 602

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
                L V+ KG                G   + +   +++  V ++  +    +V    
Sbjct: 603 DDRFFLFVTKKGMIKRSSIGLYGNCRTTGIRAVNLRDHDELMDVREIEPEVDCILVSREG 662

Query: 669 KLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRSYNRSENDL 726
             + F+I+    M R   GV+  + +              E    +  +   Y +     
Sbjct: 663 SAIRFNINDARPMGRATAGVKGMALRPNDEVVACVVTGDQERDQLLTVSEGGYGKRTTID 722

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +  RGG G L  +   ++G  + +
Sbjct: 723 QYRVQTRGGKGILNMRLTNKTGMVVGA 749



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 66/210 (31%), Gaps = 13/210 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
              +   + ++ +G I+                  + ++ D L            +L+S 
Sbjct: 601 FADDRFFLFVTKKGMIKRSSIGLYGNCRTTGIRAVNLRDHDELMDVREIEPEVDCILVSR 660

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVE 627
           +G A      +          ++ +    +++ +      D    +LL VS  G      
Sbjct: 661 EGSAIRFNINDARPMGRATAGVKGMALRPNDEVVACVVTGDQERDQLLTVSEGGYGKRTT 720

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-S 682
             +    TR GK  L +    K   +     V   D V ++    K++  S+ ++ +   
Sbjct: 721 IDQYRVQTRGGKGILNMRLTNKTGMVVGACMVNESDDVILLTSQNKIIRMSVSEVSQTRG 780

Query: 683 RG-KGVRLQSYKDGGISDVICFKICEGLTW 711
           R  +GVRL    D          + +    
Sbjct: 781 RATQGVRLVRMDDDNKVIGFDLVMDDDEDL 810


>gi|296118613|ref|ZP_06837191.1| DNA gyrase, A subunit [Corynebacterium ammoniagenes DSM 20306]
 gi|295968512|gb|EFG81759.1| DNA gyrase, A subunit [Corynebacterium ammoniagenes DSM 20306]
          Length = 856

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/773 (29%), Positives = 384/773 (49%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ N  + + +  + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDDNGDLYDKIHPIDINEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G  HPHGD ++YD+LVRLAQP+  RYP++ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVADAMGHFHPHGDSAIYDALVRLAQPWNMRYPMVDGQGNFGSPGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRIPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALAL----IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ +A   L      + E S+E  ++++ GPDFPT G ++     I +
Sbjct: 181 GMATNIPPHNLKELADAIFWLLENAEASEEESLEACMKFVKGPDFPTYG-LIVGDSGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+PYQV    L+  IAE +   +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEEQGS-RQTIVITELPYQVNPDNLVTNIAESVANGKIAGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ +++  S ++T F  NM  +    VP+ + +D +
Sbjct: 299 EDESSDRVGMRIVITLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVD-GVPRTLRIDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+ ++AH+ EV+ RR+ +R+   ++R  +L+GL+ A   +DE+IA+IR            
Sbjct: 358 LRYYVAHQIEVIVRRTQYRLDEAEKRAHVLRGLVKALDMLDEVIALIRRSPTVDEAREGL 417

Query: 421 F---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                +   Q DAIL ++LR L  LE  +I  EL  +  E      +L   ++Q   +  
Sbjct: 418 MSLLDVDTIQADAILAMQLRRLAALERQKIVDELAEIELEIADYKDILAKPERQRAIVHD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E++E+ + +        RRT       A      + +I +E + V I++ G+ +  K  S
Sbjct: 478 ELQEIVDKYGDE-----RRTQIV---AATGDVTDEDLIARENVVVTITSTGYAKRTKVDS 529

Query: 538 V--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +     K+ D +K      T D IL  +  G+ Y L A  L        G
Sbjct: 530 YKAQKRGGKGVRGAELKQDDIVKNFFICSTHDWILFFTNFGRVYRLKAYELPEASRTARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + +G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATKQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +     V+  D + +  E  + + F+ D   +  M R   GV+   ++D      
Sbjct: 650 NEGDSLIGAELVSDADDILLTSEQGQAIRFTADDEQLRPMGRATAGVKGMRFRDDDQLLS 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   + EG   + +    Y +           RGG+G +  K  P+ GK + +
Sbjct: 710 LSV-VQEGGYLLVATSGGYGKRTAIEEYAPQGRGGLGVMTFKYTPKRGKLIGA 761



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 85/245 (34%), Gaps = 14/245 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADK--ATLQQAMIEKEPITVVISNRGWIRSLKS 535
            ++  +   +  T  G+      E    +K    +Q    E  P  V+ + +G ++  + 
Sbjct: 574 RLKAYELPEASRTARGQHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATKQGRVKKSRL 633

Query: 536 HSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGE 588
                     L A++  EGDSL  A      D ILL S  G+A    A +      G   
Sbjct: 634 TDYESARSAGLIAINLNEGDSLIGAELVSDADDILLTSEQGQAIRFTADDEQLRPMGRAT 693

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS--- 645
           A    +    +  +++  V      LLV +S G        E     R G   +      
Sbjct: 694 AGVKGMRFRDDDQLLSLSVVQEGGYLLVATSGGYGKRTAIEEYAPQGRGGLGVMTFKYTP 753

Query: 646 SEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
              K+   + V   D +  +     ++   +++I   SR   GVRL +  D     VI  
Sbjct: 754 KRGKLIGAITVMEDDEIFAITSVGGVIRTEVNEIRPSSRATMGVRLVNLSDDVELLVIDR 813

Query: 704 KICEG 708
            + + 
Sbjct: 814 NVEDD 818


>gi|256820850|ref|YP_003142129.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271]
 gi|256582433|gb|ACU93568.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271]
          Length = 841

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/770 (30%), Positives = 407/770 (52%), Gaps = 43/770 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M +MG+     +KK
Sbjct: 5   EKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+GK HPHGD +VYD++VR+AQ +  RY L+ GQGNFG++ GD  AA RYTEA
Sbjct: 65  SAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM + +E +L  +D++ VD + TY++   EP+V P++ PNLL NG++GIAVGMAT++  H
Sbjct: 125 RMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L++YI  PDFPTGG I+   E + E+++ GRG   +RA
Sbjct: 185 NLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGG-IIYGYEGVKEAFKTGRGRVIIRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   +E+  G  CIVVTE+PYQV  S L++K ++L+   R+  + D+RDESA     +++
Sbjct: 244 KAEFQEIK-GKDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  ++++T F +N   L     PQ++ L  ++  ++ HR +V++R
Sbjct: 303 ILKRDAVPNVVLNNLFKHTELQTSFSVNNIALVK-GRPQLLNLKDLIFHFVEHRYDVVYR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R+ IL+G +        + + I IIR  DKPK  +++ F LT+ Q +AI
Sbjct: 362 RTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPKEDLIAEFDLTDVQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L LR + K+   Q K E +  LAE   ++ +L   +++   I  E+ E+KE +     
Sbjct: 422 LALALRRINKVLIQQTKEEYEEKLAEIRDLEDILARKERRTEIIKEELLEIKEKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+T      A      + MI  + + + IS+ G+I+              V   A 
Sbjct: 480 ---RRSTI---EYAGGEFSVEDMIPDDKMVITISHAGYIKRTQLSEYKTQSRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             ++ D L+    +     +L  +  GK + +    +  G    +  AIQ LI++  +  
Sbjct: 534 TTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEGSKTAKGRAIQNLINIESDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I             Y S   L++ + KG        E     + G   + +   +++   
Sbjct: 594 IKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKEYSRPRQNGINAITIKEGDELIEA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGL 709
              +G   + +  ++ + + F+ D++  + R  +GVR       +  +  +I  +     
Sbjct: 654 KLTSGSSQLMLAVKSGRAIRFAEDKVRAVGRNSQGVRGIDLDTENDEVVGMIAIENPREE 713

Query: 710 TWIDSAGRSYNRSENDLL-------GWLGKRGGVGSLVPKGFPRSGKFLS 752
           T +  +   Y +               +  RGG G        ++G+ ++
Sbjct: 714 TVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITEKTGQLVA 763



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/493 (12%), Positives = 152/493 (30%), Gaps = 30/493 (6%)

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
               V+ R  +  +    +  V        +++    + A+  I      ++ +  E   
Sbjct: 331 NIALVKGRPQLLNLKDLIFHFVEHRYDVVYRRTDYELRKAKERIHILEGYMKVMATEDTM 390

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
              I +   +     DL+ E        E    L +  ++   + Q           +  
Sbjct: 391 GKAIEIIRFHDKPKEDLIAEFDLTDVQAEAILALALRRINKVLIQQTKEEYEEKLAEIRD 450

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE-- 425
             ++L R+        +  +EI +       +  E      + +   P      +++   
Sbjct: 451 LEDILARKERRTEIIKEELLEIKEKYGDERRSTIEYAGGEFSVEDMIPDDKMVITISHAG 510

Query: 426 -NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             +   +   + +S   + +    +   + L       +               +R  + 
Sbjct: 511 YIKRTQLSEYKTQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEI 570

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------ 538
                T  GR       +   DK     ++   +    + +N   + + K          
Sbjct: 571 PEGSKTAKGRAIQNLINIESDDKIKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKE 630

Query: 539 -------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   ++A+  KEGD L  A     + +++L    G+A       + +   + + ++
Sbjct: 631 YSRPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFAEDKVRAVGRNSQGVR 690

Query: 592 LLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESE-------IIANTRKGKTFL 642
            +     N ++V     ++     +LVVS  G        +            R GK   
Sbjct: 691 GIDLDTENDEVVGMIAIENPREETVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVK 750

Query: 643 KVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
            +S  EK   +  +  V  G+ + ++ ++   +  SID +  + R  +GV+L + K    
Sbjct: 751 TISITEKTGQLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRILGRATQGVKLINIKGKDS 810

Query: 698 SDVICFKICEGLT 710
              +   + E   
Sbjct: 811 IAAVTKVMKEDDD 823


>gi|162451997|ref|YP_001614364.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
 gi|161162579|emb|CAN93884.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
          Length = 873

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/793 (30%), Positives = 399/793 (50%), Gaps = 58/793 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  ++ + ++    VS++  L   YL YA+S I  RAIPD+RDG KPVHRRI+++M+E  
Sbjct: 1   MEETSNIQQK--VPVSIQDELRTSYLDYAMSVIIGRAIPDVRDGLKPVHRRILYSMNEQK 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KK AR+VG+V+GK HPHGD +VYD+LVR+ Q F  RYPLI GQGN+G++DGDS
Sbjct: 59  IGPTGAHKKCARVVGDVLGKYHPHGDLAVYDALVRMGQTFSLRYPLIDGQGNYGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE+R++++A  +L  +D+D VDF   Y++ + EP V P+KFP LL NG+ GIAV
Sbjct: 119 PAAMRYTESRLSRMAVELLADLDKDTVDFVPNYDDSELEPSVLPAKFPQLLVNGSGGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ EI +A +A+I NP++++E+LL  + GPDFPTGG ++  +  IV++Y  
Sbjct: 179 GMATNIPPHNLGEIIDATIAIIRNPDVTLEELLHLVPGPDFPTGG-LIYGKSGIVQAYTT 237

Query: 246 GRGGFRVRARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +R R  VE+ +      +V TEIPYQV K+RL+ KIAE +  KRI  + ++RDE
Sbjct: 238 GRGSITMRGRSQVEKTMKGDREQLVFTEIPYQVNKARLVAKIAECMKEKRIEGISEVRDE 297

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    + + P +++  ++ L+D++  F + +N+      P V+ L   L  +
Sbjct: 298 SDREGMRIVVELKKDIFPQVVLNQLYRLTDLQATFGV-INLSIANGRPAVLSLKDTLSHF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----- 419
           + HRREV+ RR  F ++  + + E+++GL +A  +ID I+A IR    P     +     
Sbjct: 357 IEHRREVVTRRCRFELRQAESQRELVEGLGMATSDIDRIVATIRASSDPDDARENLQKLP 416

Query: 420 -------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+E Q  AIL +RL  L  LE  ++  E   L
Sbjct: 417 LRGLGEFLRRAGRPEPECAEADTRGDYFLSERQAKAILEMRLSRLTGLEREKLAKEYGEL 476

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
               E++ ++L       N I  E+ E+K  F       +RRT       A+     + +
Sbjct: 477 SQTIERLRAILADMGLLMNVIVMELEEIKARFGD-----KRRTEIV---PAEAEIQMEDL 528

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V IS+ G+++          +     +  +  +E D +     A T   +   
Sbjct: 529 IQEEDMVVTISHAGYLKRTPTSTYRAQRRGGKGMVGMEAREEDWVSQLFVASTHSYVFFF 588

Query: 567 STDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           S  GK +      +     + +  AI   + +   + +        +D    ++ ++ +G
Sbjct: 589 SDKGKVFVKKVYEIPQAPRNAKGRAIVNFVGMEPGEKVAAITPVPSFDGETFVVTLTRRG 648

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
                  +E      KG   +++   +++       G   + +   +   + F  DQ+  
Sbjct: 649 QIKKTALNEYENYRDKGIIGVRIEEGDQLFTAALTDGKRELVIATRSGMSIRFPEDQVRP 708

Query: 681 MSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
             R   GV+     +G +   +          +    R Y +        L  RGG G +
Sbjct: 709 TGRATMGVKGIELDEGDVVVGLGVSGDGRDRVLAVCERGYGKQTPLEEFRLQSRGGKGVI 768

Query: 740 VPKGFPRSGKFLS 752
           +     R+G  + 
Sbjct: 769 LIDASERNGPVVG 781



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 594 IDLNHNQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK--- 649
           I+L+    +V      D   ++L V  +G        E    +R GK  + + + E+   
Sbjct: 719 IELDEGDVVVGLGVSGDGRDRVLAVCERGYGKQTPLEEFRLQSRGGKGVILIDASERNGP 778

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
           +  V  V+  D V +V +  +++     +I E  R  +GVR+ 
Sbjct: 779 VVGVAMVSPSDEVLIVTDRGQMIRTKTSEIRETGRNAQGVRIM 821


>gi|56751268|ref|YP_171969.1| DNA gyrase subunit A [Synechococcus elongatus PCC 6301]
 gi|81299065|ref|YP_399273.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942]
 gi|56686227|dbj|BAD79449.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
 gi|81167946|gb|ABB56286.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942]
          Length = 856

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/785 (30%), Positives = 376/785 (47%), Gaps = 53/785 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+
Sbjct: 4   QERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+ID D  AA RYTE
Sbjct: 64  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIDGHGNFGSIDNDPPAAMRYTE 123

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +    +LQ ++ + VDF D ++    EP V P++ P LL NG+SGIAVGMAT+IP
Sbjct: 124 SRLKPLTTDGLLQDIEAETVDFSDNFDGSQQEPTVLPARLPQLLLNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+    +ALI NPEIS  +L+ +I GPDFPTGG ++     I ++Y  G+G   +
Sbjct: 184 PHNPTELIAGVIALIHNPEISDRELMRHIPGPDFPTGGQVL-GSAGIRDAYLTGKGSITM 242

Query: 253 RARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    ++ +          I++TE+PYQ  K+ LIE+IAE++  KR+  + DIRDES  D
Sbjct: 243 RGVATIDTIEAPGRPVRDAIIITELPYQTNKAALIERIAEMVNEKRLEGISDIRDESDRD 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ +++  + +++ F  NM  L     P ++ L   L+ +L  R
Sbjct: 303 GMRIVIELKRDAYPQVVLNNLYKQTPLQSNFSANMLALVD-GEPVLLTLKRSLEVFLDFR 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTE 425
            E + RR+ + ++  + R  +L+GLLIA  N+D II +IR           ++  + L+E
Sbjct: 362 IETIERRTRYELRKAEERDHLLQGLLIALGNLDAIIELIRRSADAPRAKQELIDVYGLSE 421

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E  +L    E    +L   ++    I  E+ ++++ 
Sbjct: 422 VQSDAILQMQLRRLTALEAEKIEQEHQDLQRRIEDYRDILARRERVLEIIETELEQLQQR 481

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIE-----KEPITVVISNRGWIRSLKSHSVDL 540
           F +      RRTT  E     +     A  +      +   +         +    +   
Sbjct: 482 FQEP-----RRTTLLEADGELETIDLIANEKSILLLTQQGYIKRMPVNEFTAQSRGTRGK 536

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
           +    K+ DS++  L     D IL  S  G  Y LPA  +   S    G  I  L+ +  
Sbjct: 537 AGAKTKDDDSVEHFLTCCDHDNILFFSDRGVVYNLPAYRIPAASRNARGVPIVQLLPIPR 596

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + I +      +     L++++  G       S        G   + +S  ++++ V  
Sbjct: 597 EERITSIVPVSAFSDDEYLVMLTQGGYIKKTALSAFANIRSNGLIAIALSEGDQLRWVRL 656

Query: 656 VT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-KGVRLQSYKDGGI-------------- 697
               D + +       + F    D +  + R  +GVR  S + G                
Sbjct: 657 AKPEDSILIGSRKGMTIHFRASHDDLRPLGRATRGVRAMSLRSGDTLISMDVLPASLTAN 716

Query: 698 ----------SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                      D +      G   +    +   +        L KR G+G    K   + 
Sbjct: 717 MTETGDEDEADDAVEVVASPGPWVLVVTAQGLGKRVPVHQFRLQKRAGLGLRAIKFRSKQ 776

Query: 748 GKFLS 752
            + +S
Sbjct: 777 DELVS 781



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 5/116 (4%)

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSE-EKMKLVVKVT-GDHV 661
            V      +LVV+++G    V   +     R G     +K  S+ +++  +  V  GD +
Sbjct: 732 VVASPGPWVLVVTAQGLGKRVPVHQFRLQKRAGLGLRAIKFRSKQDELVSLRIVESGDEL 791

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++ +   ++  + D IP+ SR   GVR+Q      +   +           +++ 
Sbjct: 792 VMISQRSVIIRQASDAIPQQSRAATGVRVQRLDADDVLAAVALVPPGEEELDETSE 847


>gi|326335578|ref|ZP_08201765.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692344|gb|EGD34296.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 840

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/774 (28%), Positives = 398/774 (51%), Gaps = 47/774 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+     +KK
Sbjct: 5   EKLIPINIEDQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRMAQDWNMRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++AE +L  ++++ VD R  +++   EP V P++ PNLL NG +GIAVGMAT++P H
Sbjct: 125 RMRRMAEDMLIDIEKETVDHRLNFDDTLEEPTVLPTRIPNLLVNGAAGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A ++N  I+I++L+EYI  PDFPTGG I    + + E+++ GRG   +R 
Sbjct: 185 NLSEVVDGIVAYLENQNITIDELIEYIKAPDFPTGGTIY-GYDGVREAFKTGRGRIIIRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV     CI+VTEIPYQV K+ ++++ A+L+   ++  + D+ DE+ +    +++
Sbjct: 244 KAHFEEVD-NRDCIIVTEIPYQVNKALMVKQTADLVKEGKLDGIADVFDETGKGGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +   P++++ ++F  + +++ F +N   L     P+ + L  ++  ++ HR +V++R
Sbjct: 303 VLKKDAIPNVVLNNLFKHTPLQSSFSVNNIALV-NGRPEQLNLKDLIYHFVEHRHDVVYR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDE------IIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + ++    +  IL+G +      D       II    N    K  ++  F L+E Q 
Sbjct: 362 RTEYELKKAKEKAHILEGYMKVIATQDTLDRAIYIIRHSDNPQIAKEELIKEFELSEIQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+LRL  L  +E  +I+ E + ++A    ++ +L   +++   I  E+ EVK  +  
Sbjct: 422 QAILDLRLARLTGMELNKIREEYEQIMALIMDLEDILAHKERRTEIIKNELIEVKAKYGD 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
                 RR+       +      + +I  E + + ISN G+I+    +            
Sbjct: 482 -----DRRSII---EYSGGDISMEDIIPNEQVVITISNAGYIKRTPVNEYKTQARGGVGQ 533

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-HN 599
            A   ++ D ++          +L  +  GK + L    +  G  + +   +   +N  +
Sbjct: 534 KASATRDKDFIEYLFVGTNHQYMLFFTEKGKCFWLRVYEIPEGGRNTKGRAIQNLINIDS 593

Query: 600 QDIVTAFVYDST---------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +D V AF+               +++ + KG        +     + G   + +  ++++
Sbjct: 594 EDNVKAFICTQDLKDQEYINSHYVIMATKKGIIKKTALEQYSRPRQNGIVAITIKEDDEL 653

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD---GGISDVICFKI 705
                 TG   V +  ++ K + F  +++  + R G GVR  S+ D     +  +I  + 
Sbjct: 654 LEARLTTGSSQVMMAVKSGKAIRFPEEKVRSVGRSGSGVRGISFDDEKNDEVIGMITIEN 713

Query: 706 CEGLTWIDSAGRSYNRSENDLL-------GWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  T +  +   Y +               +  RGG G        ++GK ++
Sbjct: 714 PKEETVLVVSENGYGKRTFIDDPETGEAVYRITNRGGKGVKTISITEKTGKLVA 767



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 14/134 (10%)

Query: 597 NHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESE-------IIANTRKGKTF--LKVS 645
             N +++     ++     +LVVS  G        +            R GK    + ++
Sbjct: 700 EKNDEVIGMITIENPKEETVLVVSENGYGKRTFIDDPETGEAVYRITNRGGKGVKTISIT 759

Query: 646 SE-EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
            +  K+  +  V+  D + ++ ++   +  S++ +  M R  +GVRL + K+      + 
Sbjct: 760 EKTGKLVAIKSVSQEDDLMIINKSGMAIRMSVEALRVMGRATQGVRLINIKENDSIAAVA 819

Query: 703 FKICEGLTWIDSAG 716
             + E    IDS  
Sbjct: 820 KVMKEDDNEIDSGE 833


>gi|15611708|ref|NP_223359.1| DNA gyrase subunit A [Helicobacter pylori J99]
 gi|9789773|sp|Q9ZLD9|GYRA_HELPJ RecName: Full=DNA gyrase subunit A
 gi|4155194|gb|AAD06219.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
          Length = 828

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/759 (33%), Positives = 395/759 (52%), Gaps = 15/759 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDHLVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A   ++ NP   ++K+LE++ GPDFPTGG I+  +  IVE+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGG-IIYGKAGIVEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P+        RFS
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIERFS 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE FS       + +     +    A     +       V   +               +
Sbjct: 478 KEQFSSPRRTEIQESYESIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLS 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
               E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI L  N+
Sbjct: 538 GSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNE 597

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKV 656
            I+       +     L   +  G       SE   N    G   + +   +++     V
Sbjct: 598 KIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVV 657

Query: 657 TGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             +  H+ +       + F ++ + E+ R  +GV      +            +    + 
Sbjct: 658 DKNAKHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVISDDSNKLLS 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +     +           RGG G +  K   ++G  +S
Sbjct: 718 VSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVS 756



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 6/152 (3%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G     P  ++         +  +    ++  +    + D + KLL VS  G        
Sbjct: 671 GMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVISDDSNKLLSVSENGLGKQTLAE 730

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHV--AVVGENRKLLIFSIDQIPEMSR- 683
                +R GK  + +   +K   +  V+ V  +++   ++  + K++  SI  I E  R 
Sbjct: 731 AYREQSRGGKGVIGMKLTQKTGNLVSVISVDDENLNLMILTASAKMIRVSIKDIRETGRN 790

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             GV+L +  D  +    C K  E      S+
Sbjct: 791 ASGVKLINTADKVVYVNSCPKEEEPENLETSS 822


>gi|308182810|ref|YP_003926937.1| DNA gyrase subunit A [Helicobacter pylori PeCan4]
 gi|308064995|gb|ADO06887.1| DNA gyrase subunit A [Helicobacter pylori PeCan4]
          Length = 828

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/767 (33%), Positives = 414/767 (53%), Gaps = 31/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNLISETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VY +LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKIAYKKSARIVGDVIGKYHPHGDNAVYGALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE++      IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKMK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELINDLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
           KE FS      +RRT   E   A +    + +I  EP+ V +S +G+             
Sbjct: 478 KEQFS-----SQRRTEIQE---AYENIDVEDLIANEPMVVSMSYKGYVKRVDLKAYERQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  + +  E D ++    A+T D +L ++  G+ Y L    +        G+AI  
Sbjct: 530 RGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEE 648
           LI L  ++ I+       +     L   +  G       SE  +N    G   + +   +
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGD 649

Query: 649 KMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++     V  D  H+ +       + F ++ + E+ R  +GVR     +           
Sbjct: 650 ELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVREIGRNARGVRGIKLNENDFVVGAVVIN 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    +  +     +           RGG G +  K   ++G  +S
Sbjct: 710 DDSNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756



 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G     P  ++     +   ++ +    ++  +    + D + KLL VS  G        
Sbjct: 671 GIFIKFPLEDVREIGRNARGVRGIKLNENDFVVGAVVINDDSNKLLSVSENGLGKQTLAE 730

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SR 683
                +R GK  + +   +K   +  V  V  +   + ++  + K++  SI  I E   R
Sbjct: 731 AYREQSRGGKGIIGMKLTQKTGNLVSVTSVDDENLDLMILTASAKMIRVSIKDIKETIGR 790

Query: 684 -GKGVRLQSYKDGGI 697
              GV+L    D  +
Sbjct: 791 NTSGVKLIDTADKVV 805


>gi|317014116|gb|ADU81552.1| DNA gyrase subunit A [Helicobacter pylori Gambia94/24]
          Length = 828

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/759 (33%), Positives = 398/759 (52%), Gaps = 15/759 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDHLVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A   +++NP   ++++LE++ GPDFPTGG I+  +  IVE+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGG-IIYGKAGIVEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RFS
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFS 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE FS       + +     +    A     +       V   +               +
Sbjct: 478 KEQFSSPRRTEIQESYESIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLS 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
               E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI L  N+
Sbjct: 538 GSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNE 597

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKV 656
            I+       +     L   +  G       SE   N    G   + +   +++     V
Sbjct: 598 KIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVV 657

Query: 657 TGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             +  H+ +       + F ++ + E+ R  +GV      +            +    + 
Sbjct: 658 DKNAKHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVISDDSNKLLS 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +     +           RGG G +  K   ++G  +S
Sbjct: 718 VSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVS 756



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 6/151 (3%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G     P  ++         +  +    ++  +    + D + KLL VS  G        
Sbjct: 671 GMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVISDDSNKLLSVSENGLGKQTLAE 730

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR- 683
                +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI  I E  R 
Sbjct: 731 AYREQSRGGKGVIGMKLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRN 790

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             GV+L +  D  +    C K  E      S
Sbjct: 791 ASGVKLINTADKVVYVNSCPKEEEPENLETS 821


>gi|31544927|ref|NP_853505.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)]
 gi|33860161|sp|P47719|GYRA_MYCGA RecName: Full=DNA gyrase subunit A
 gi|31541774|gb|AAP57073.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)]
 gi|284931005|gb|ADC30944.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(high)]
          Length = 846

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/771 (31%), Positives = 412/771 (53%), Gaps = 27/771 (3%)

Query: 1   MGVDNISNSNTLVEENV-KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  ++ +N   L+ + V K  S+   LE  ++ YA+S I  RA+P+ RDG KPVHRR+++
Sbjct: 1   MNPNDKNNIKELLNKTVVKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
                GL     ++KSA+IVG V+GK HPH D ++Y+++VR+AQPF  RY LI G GNFG
Sbjct: 61  GAYTSGLTHDKPYRKSAQIVGHVMGKYHPHSDSAIYETMVRMAQPFSLRYMLIDGHGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGDSAAA RYTEAR+++++  +L+ +D+D VDF D Y+  + EP+V PS FPNLLANG
Sbjct: 121 SIDGDSAAAMRYTEARLSKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+      L+ N   +IE+L E+I GPDFPT   I+     I
Sbjct: 181 SSGIAVGMATNIPPHNLSELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEIL-GETGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E +  GRG   VRA+  +EE+      IV+T+IPY V K+ LI KIAEL+  ++I  + 
Sbjct: 240 NEYFNTGRGSVSVRAKSEIEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIA 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  +   ++    R + P++L+  ++  + ++T F + M  L     P+V+ L  
Sbjct: 300 DLRDESNREGIRIVIETKRDVIPEVLLNQLYKSTQLQTNFSVAMLALV-NNQPKVLNLKE 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPV 416
            L+ ++ H+ ++L R+++F ++       I++GL+IA  NID++I  I+N       K  
Sbjct: 359 ALQIYIDHQFDILLRKTNFELKKAKASAHIVEGLVIATNNIDDVIETIKNAKDNEDAKNT 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++++ L++ Q  AIL++RLRSL  LE   ++ EL  L    + ++ +L + +++   I+
Sbjct: 419 LMTKYELSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKERRIKIIS 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            ++ E+   F        RRT        +     + +I  E + +  S++G+++     
Sbjct: 479 DQLDEIDHKFGDE-----RRTKI--CYGLNSTIDNEQLIPVETVVITRSSKGYLKRIPIS 531

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
                    V +  ++  E D ++  +   T   +L  +  GK Y + A  +  G    +
Sbjct: 532 AYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISK 591

Query: 589 --AIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
                 LI +  ++ +++    +   +      + KG    V+ SE       GK  +K+
Sbjct: 592 GIPAINLISIEKDEKLMSLLSINDYDSGYFFFSTKKGLVKRVKASEFSRIQNNGKIAIKL 651

Query: 645 SSEEKMKLVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  + +  V+K  GD    +G  +  L+ F  D +  M R  +GV    +K+     +  
Sbjct: 652 TENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSMGRTAQGVIGVKFKNPNDEVIGL 711

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               EG   +    +   +  +     +  RG  G +  K  P++G  +++
Sbjct: 712 SSSHEGSLLLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTPKTGNIINT 762



 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 6/190 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  +    A+   E DSL   +     + I +  + G         + S     + +  +
Sbjct: 640 RIQNNGKIAIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSMGRTAQGVIGV 699

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
              N N +++          LL V  KG   + +  E     R  K  + +        +
Sbjct: 700 KFKNPNDEVIGLSSSHEGSLLLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTPKTGNI 759

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
                V G + + ++    K++   + ++ E  R   GV+L S  +   +  V  F + +
Sbjct: 760 INTQLVNGNEELLMISSTGKIVRVPLAEVSEQGRNTSGVKLISLNEKETLQSVAIFDVEQ 819

Query: 708 GLTWIDSAGR 717
             +    +  
Sbjct: 820 DDSQQVGSDN 829


>gi|160872886|ref|ZP_02063018.1| DNA gyrase, A subunit [Rickettsiella grylli]
 gi|159121685|gb|EDP47023.1| DNA gyrase, A subunit [Rickettsiella grylli]
          Length = 859

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/797 (32%), Positives = 408/797 (51%), Gaps = 63/797 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S       + ++++   L++ YLAYA+S I  RA+PD RDG KPVHRR++ AM+E+G
Sbjct: 1   MADS---AANEITSITVEKELKQSYLAYAMSVIVGRALPDSRDGLKPVHRRVLFAMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+    KKSAR+VG+VIGK HPHGD ++YD++VR+AQ F  R  LI GQGNFG++DGDS
Sbjct: 58  NDWNKPHKKSARVVGDVIGKYHPHGDAAIYDTIVRMAQRFSMRAVLIDGQGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AA+ RYTE RM+++A  +L  + ++ VDF   Y+E +  P V P++ PNLL NG+SGIAV
Sbjct: 118 AASMRYTEIRMSKLAHALLADLAKETVDFVPNYDETEHIPSVLPTRVPNLLVNGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A +AL+++ E+SIE+L+ +I GPDFPT G ++  ++ I+E+Y  
Sbjct: 178 GMATNIPPHNLAEVIDACVALLNDSELSIERLMHFIKGPDFPTAG-LIYGKQGIIEAYHT 236

Query: 246 GRGGFRVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRAR  + ++       I+VTE+PYQV K++LIEKIAEL+  KRI  +  +RDE
Sbjct: 237 GRGRLFVRARVQIEQDEKSNKQRIIVTELPYQVNKAKLIEKIAELVKEKRIEGITALRDE 296

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   V+    R  + D+L+ ++F  + ++  F +NM  L     P ++ L  ++ E+
Sbjct: 297 SDKDGMRVVIEVKRGENVDVLLNNLFSQTQLQVTFGINMVALVD-GRPVLLNLKQLISEF 355

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLI--------------------------AYL 398
           LAHRREV+ RR+ F ++    R  +L+GL I                          A  
Sbjct: 356 LAHRREVVTRRTIFELRKARERAHLLEGLGIALANIDLMIGLIKAAKDPAEAKSQLLAQD 415

Query: 399 NIDEIIAIIRNEDKPKPVMVS-------RFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
               ++A +  +                 + L+  Q  AIL+LRL  L  LE+ +I  E 
Sbjct: 416 WSLGLVAEMLTKTDDWAEHEYGVKKDSNTYRLSPEQAQAILDLRLHRLTGLEQEKILKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
              L     +  +LN  ++    I  E+  +KE F        RRT        D    +
Sbjct: 476 REQLTIIIDLLDILNQPERLCRVIQEELIAIKEEFLDP-----RRTEII---TVDAEINE 527

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  E + V +S+ G+++          +      S+   KE D ++  L A+T   +
Sbjct: 528 EDLIPAEDVVVTLSHEGYVKRQSLDVYHAQRRGGRGKSSGDVKEEDFIEHLLIANTHATL 587

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ GK Y L    L  G    +   I  L+ L  N+ I        Y +   + + +
Sbjct: 588 LCFSSIGKVYWLKVYKLPEGSRIAKGRPIINLLALGENERITAVLPIQNYSAEHFIFMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
            KG        +       G   + +   +++  V    G   V +  +  K++ F+   
Sbjct: 648 MKGTTKKTSLIDFSRPRHDGIIAIDLRDHDRLVGVALTDGQQDVLLFTDAGKVIRFNESN 707

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R   GVR    ++G     +      GL  + +    Y +        L  RGG 
Sbjct: 708 VRCMGRTACGVRGIKLQEGQRVISLIIAKPYGL-ILTATRHGYGKCTPVHDHRLTSRGGS 766

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  K   R+G+ +++
Sbjct: 767 GVIAIKTTARNGQVVAA 783



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 8/194 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
                  I   +     + A+  ++ D L           +LL +  GK       N+  
Sbjct: 651 TTKKTSLIDFSRPRHDGIIAIDLRDHDRLVGVALTDGQQDVLLFTDAGKVIRFNESNVRC 710

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  ++  I L   Q +++  +      +L  +  G        +    +R G   +
Sbjct: 711 MGRTACGVRG-IKLQEGQRVISLIIAKPYGLILTATRHGYGKCTPVHDHRLTSRGGSGVI 769

Query: 643 KVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            +     + + +  V  +  D V ++     L+   + +I   SR  +GVRL    +G  
Sbjct: 770 AIKTTARNGQVVAAVQVLPSDEVMLITNKATLVRTRVAEIRVASRHSQGVRLIRLNEGET 829

Query: 698 SDVICFKICEGLTW 711
             ++  +  E    
Sbjct: 830 --LVGLERIEEDLI 841



 Score = 44.4 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 5/148 (3%)

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V+  N   +R +   +  +  +  +EG  +   + A     IL  +  G     P  +  
Sbjct: 700 VIRFNESNVRCMGRTACGVRGIKLQEGQRVISLIIAKPYGLILTATRHGYGKCTPVHDHR 759

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGK 639
                G  +  +     N  +V A     + +++++++K        +EI   +   +G 
Sbjct: 760 LTSRGGSGVIAIKTTARNGQVVAAVQVLPSDEVMLITNKATLVRTRVAEIRVASRHSQGV 819

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
             ++++  E +  + ++  D   ++ EN
Sbjct: 820 RLIRLNEGETLVGLERIEED---LITEN 844


>gi|322379610|ref|ZP_08053947.1| DNA gyrase subunit A [Helicobacter suis HS1]
 gi|322379629|ref|ZP_08053953.1| DNA gyrase subunit A [Helicobacter suis HS5]
 gi|321147945|gb|EFX42521.1| DNA gyrase subunit A [Helicobacter suis HS5]
 gi|321148004|gb|EFX42567.1| DNA gyrase subunit A [Helicobacter suis HS1]
          Length = 826

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/756 (32%), Positives = 404/756 (53%), Gaps = 31/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            VK + +  +L+  YL Y++S I  RA+PD RDG KPVHRRI++AM E+GL     +KKS
Sbjct: 23  EVKEIVIEESLKASYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGARVPYKKS 82

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD +VY++LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYTEAR
Sbjct: 83  ARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYTEAR 142

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M   +E +L+ +D+D VDF D Y+    EP V PS+ PNLL NG+SGIAVGMATSIP H 
Sbjct: 143 MATPSEELLRDIDKDTVDFNDNYDNTLKEPDVLPSRLPNLLINGSSGIAVGMATSIPPHR 202

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI EA + +++NP+ S+  +L+ + GPDFPTGG I+  ++ I+E+Y  GRG  RVRA+
Sbjct: 203 LDEIIEALIFVLENPQASLSDILDLVPGPDFPTGG-IIHGKQGILEAYSSGRGRIRVRAK 261

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
               E   G   I++ E+PYQ  K++L+E+I+EL   K +  + ++RDES  +   V+  
Sbjct: 262 TR-LERIEGRESIIIEEVPYQTNKAKLVEQISELARDKIVEGISEVRDESDREGIRVVID 320

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++  ++  S ME+ F + + +    + P++  L  +LK +L HR+ ++ RR
Sbjct: 321 LKREANAQIVLNQLYKSSGMESTFSI-ILLAIHNKEPRIFNLLELLKLFLMHRKTIVIRR 379

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAIL 432
           + + ++    R+ IL+GLL+A  N + +I +I+           ++    L++ Q  AIL
Sbjct: 380 TIYELEKAKARIHILEGLLVALKNSEAVIDLIKKSSDTHSAQEALIQAHQLSQEQSKAIL 439

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE+ +I  E   L A  +++ ++L    +  + I  E+ E+KE FS +   
Sbjct: 440 EMRLQRLTGLEQEKISKEHAELQAIIQELQAILEHADKLNHLIKEELLEIKEKFSTA--- 496

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALH 544
             R+T   E   A      + +I +E + V +S+RG+ + +        K       + +
Sbjct: 497 --RKTQIEEDYEA---LSDEDLIAREDMVVTLSHRGYAKRMPLKIYEQQKRGGKGKISGN 551

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
             E D ++    A+T D IL ++  G+ Y L    +     +  G+A+  LID+   + I
Sbjct: 552 THEDDFIEFFFSANTHDIILFITDKGQLYWLKVYKIPEMGRNAIGKALVNLIDIEPGEKI 611

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
                   +     L+  + KG     + S      R G   +++   + +     +   
Sbjct: 612 CAILSTPDFSPDKFLVFFTKKGMIKRTQLSAFGRV-RIGVRSIELKEGDALVTAQILEHE 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       + F    + +M R   GV     K+G         + +    +  + 
Sbjct: 671 NQELFMATAKGMCIRFKASGVRDMGRTAMGVIGMRLKEGDFVIGASIALSDQHKLLTISS 730

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +   +        L  RGG+G +  K  P++G  ++
Sbjct: 731 KGMGKQTLIGAYRLQNRGGLGVIGAKLTPKTGNLVA 766



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/362 (12%), Positives = 101/362 (27%), Gaps = 22/362 (6%)

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI----AYLNIDEIIAIIRNEDKPK 414
            I KE    +  +   ++          +   + L I    +     +I           
Sbjct: 453 KISKEHAELQAIIQELQAILEHADKLNHLIKEELLEIKEKFSTARKTQIEEDYEALSDED 512

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
            +      +T +       + L+   + +         N   +         +       
Sbjct: 513 LIAREDMVVTLSHRGYAKRMPLKIYEQQKRGGKGKISGNTHEDDFIEFFFSANTHDIILF 572

Query: 475 IACEIREVKEIFSKSTDLGRRRT-------TFCEVSRADKATLQQAMIEKEPITVVISNR 527
           I  + +       K  ++GR             E      A L       +   V  + +
Sbjct: 573 ITDKGQLYWLKVYKIPEMGRNAIGKALVNLIDIEPGEKICAILSTPDFSPDKFLVFFTKK 632

Query: 528 GWIRSLKSHSVDLSALHFKE------GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           G I+  +  +     +  +          +   +  H    + + +  G      A  + 
Sbjct: 633 GMIKRTQLSAFGRVRIGVRSIELKEGDALVTAQILEHENQELFMATAKGMCIRFKASGVR 692

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                   +  +     +  I  +       KLL +SSKG              R G   
Sbjct: 693 DMGRTAMGVIGMRLKEGDFVIGASIALSDQHKLLTISSKGMGKQTLIGAYRLQNRGGLGV 752

Query: 642 L--KV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +  K+   +   + +V    G  + ++ +N K++   ++ I E  R   GV+L S +  G
Sbjct: 753 IGAKLTPKTGNLVAIVHVDEGQDLMLLTKNGKMIRMPMESIRETGRHASGVKLVSVEGDG 812

Query: 697 IS 698
           + 
Sbjct: 813 VV 814


>gi|297379899|gb|ADI34786.1| DNA gyrase, A subunit [Helicobacter pylori v225d]
          Length = 828

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/767 (33%), Positives = 415/767 (54%), Gaps = 31/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNLINETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIIDLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
           KE FS      +RRT   E   A +    + +I  EP+ V +S +G+             
Sbjct: 478 KEQFS-----SQRRTEIQE---AYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  + +  E D ++    A+T D +L ++  G+ Y L    +        G+AI  
Sbjct: 530 RGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEE 648
           LI L+ ++ I+       +     L   +  G       SE  +N    G   + +   +
Sbjct: 590 LISLDPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGD 649

Query: 649 KMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++     V  D  H+ +       + FS++ + E+ R  +GV      +           
Sbjct: 650 ELVSAKIVDKDAKHLLIASYLGLFIKFSLEDVREIGRTTRGVIGIKLNENDFVVGAVVIN 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    +  +     +           RGG G +  K   ++G  +S
Sbjct: 710 DDSNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVS 756



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 594 IDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK--- 649
           I LN N  +V    + D + KLL VS  G             +R GK  + +   +K   
Sbjct: 694 IKLNENDFVVGAVVINDDSNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGN 753

Query: 650 MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQSYKDGGI 697
           +  V+ V  +   + ++  + K++  SI  I E   R   GV+L    D  +
Sbjct: 754 LVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTADKVV 805


>gi|296137760|ref|YP_003645003.1| DNA gyrase subunit alpha [Tsukamurella paurometabola DSM 20162]
 gi|296025894|gb|ADG76664.1| DNA gyrase, A subunit [Tsukamurella paurometabola DSM 20162]
          Length = 837

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/777 (30%), Positives = 393/777 (50%), Gaps = 40/777 (5%)

Query: 6   ISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    E    + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPV RRI++A 
Sbjct: 1   MTDTTPPTETGGHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGMKPVQRRILYAS 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G     ++ KSA+ V E +G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+ 
Sbjct: 61  YDAGYRPDRSYVKSAKPVAETMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSP 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D AAA RYTEAR+T +A  +L+G+D++ VDF   Y+ +  EP V P++ PNLL NG+ 
Sbjct: 121 GNDPAAAMRYTEARLTPLAMEMLRGIDQETVDFAPNYDGKTQEPTVLPARVPNLLMNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN++EI EA          + E ++E  +E + GPDFPT G+IV   +
Sbjct: 181 GIAVGMATNIPPHNLREIAEAVFWCLENYDADSEATLEACMERVKGPDFPTHGLIVGG-Q 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y  GRG  R+R    VEE  +G+  +V+TE+PYQV    L+  IAE +   +I  
Sbjct: 240 GIKDAYSTGRGSIRMRGVVEVEEDSKGATELVITELPYQVNPDNLVLSIAEQVRDGKIAG 299

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           +  I D+ S      ++    R     +++ +++  S ++T F  NM  +    VP+ + 
Sbjct: 300 ISKIEDQSSDRVGMRIVVRLKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVD-GVPRTLR 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--- 413
           LD +++ ++AH+ +V+ RR+ F ++  + R  IL+GL+ A   +DE+IA+IR        
Sbjct: 359 LDQMIRYYVAHQLDVIVRRTKFLLRKAEERAHILRGLVKALDALDEVIALIRASQTTEIA 418

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++    + E Q +AIL+++LR L  LE  +I  EL  +  E   +  +L+  ++Q  
Sbjct: 419 RTGLMELLDVDELQANAILDMQLRKLAALERQKIIDELAEIEREIADLKDILDKPERQRA 478

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
            +  E+ E+ E F        RRT       AD     + +I +E + V I+  G+ +  
Sbjct: 479 IVRDELGEIVEKFGD-----DRRTKII---AADGDVTDEDLIAREDVVVTITETGYAKRT 530

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                   K     +     K+ D ++      T D IL  +T G+ Y   A  L     
Sbjct: 531 KTDLYRSQKRGGKGVKGADLKQDDIVRHFFVCSTHDWILFFTTKGRVYRAKAYELPEQSR 590

Query: 586 --HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+     + I        YD    L++ +  G        +  +N   G  
Sbjct: 591 TARGQHVANLLAFQPEERIAQVIQIKGYDDAPYLVLATKNGLVKKSRLEDFDSNRSGGIV 650

Query: 641 FLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGG 696
            + +  E+++     V + D + +V +N + + FS     +  M R   GV+   + +G 
Sbjct: 651 AINLRDEDELVGAALVSSEDDLLLVSKNAQSIRFSATDEALRPMGRATSGVQGMRF-NGD 709

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +    + E    + +    Y +        +  RGG G L  +  P+ G  + +
Sbjct: 710 DQLLALNVVQEDTYLLVATSGGYAKRTAMDDYPVQGRGGKGVLTIQFDPKRGDLVGA 766



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 5/144 (3%)

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
             L   G   +    +  N +  ++   V      LLV +S G A      +     R G
Sbjct: 689 EALRPMGRATSGVQGMRFNGDDQLLALNVVQEDTYLLVATSGGYAKRTAMDDYPVQGRGG 748

Query: 639 KTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
           K  L +        +   + V  +  +  +     ++  +  Q+ +  R  KGVRL +  
Sbjct: 749 KGVLTIQFDPKRGDLVGALIVNDETELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLG 808

Query: 694 DGGISDVICFKICEGLTWIDSAGR 717
           +G     I     E     D   +
Sbjct: 809 EGTTLLAIARNADETDETSDETEQ 832


>gi|219851687|ref|YP_002466119.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c]
 gi|219545946|gb|ACL16396.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c]
          Length = 838

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/747 (32%), Positives = 378/747 (50%), Gaps = 14/747 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V++   ++  Y+ YA+S I  RAIPD+RDG KPVHRR ++AM E G     A+KKS
Sbjct: 13  KVIPVNIEDEMKSSYIDYAMSVIIGRAIPDIRDGLKPVHRRTLYAMWEEGNTSDKAYKKS 72

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR V   +GK HPHGD S+YD+LV++AQPF  R PL+ GQGNFG+IDGDSAAA RYTEAR
Sbjct: 73  ARAVAGTMGKYHPHGDASIYDTLVKMAQPFSYRIPLVDGQGNFGSIDGDSAAAMRYTEAR 132

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+ AE +L  +D+  VDF   ++    EP V PSK PNLL NGTSGIAVGMAT++P HN
Sbjct: 133 LTRYAEELLADLDKKTVDFTPNFDSSTEEPTVLPSKVPNLLVNGTSGIAVGMATNMPPHN 192

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+C A    I NP+ ++E L++ + GPDFPTGG ++   E IV +Y  G G   VR  
Sbjct: 193 LREVCSAVEMTIKNPDCTVEDLMQVMPGPDFPTGG-LITGTEGIVSAYHTGYGKLTVRGV 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+V   +  I+++EIPYQV K+R++E IA L+  K+I  + D+RDES  D   V+  
Sbjct: 252 AEIEDVETKTPKIIISEIPYQVNKARMVELIATLVKEKKIEGISDLRDESDRDGLRVVVD 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + + P +++  ++  + +E+ F + +N+      P+V+ L  I+ E+L HR  V+ RR
Sbjct: 312 LKKGVIPTVVLNQLYKHTPLESTFGI-INLAISDNQPKVLGLKAIISEFLHHRATVVRRR 370

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAIL 432
             F ++    R+ IL GLL+A   IDE+IA IR     +       + F LTE Q  AIL
Sbjct: 371 CEFDLKKAKDRLHILLGLLVALDRIDEVIATIRQSASSEAAQKALIATFGLTEPQTVAIL 430

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++LR L  LE+ +I+ E D+L     +++ +L+     + +I  EI +V E +      
Sbjct: 431 QMQLRRLAALEQAKIRDERDSLAHVIAELERILSCEANIYEEIRKEIVDVGERYGDDRRT 490

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
               +                +       +        R  +     +  +  K+ DS++
Sbjct: 491 EITCSQTILEREDLIEDKPVLISITTQNYIKRLPLETYRMQRRGGRGVIGMATKDEDSVE 550

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----Y 608
               A   D +L  +TDG+ Y L   N+       +   ++  L    +++TA +    +
Sbjct: 551 DIFVASMHDYLLCFTTDGRVYWLKVYNIPEASRTSKGKAIVNLLELQDELITAVIPIRTF 610

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGEN 667
                LL  + +G    V + +       G   + +   + +  V    G   + +    
Sbjct: 611 RHDRYLLFSTEQGQVVKVPQDQFSRPRSTGINAISLRENDSLVDVKLTDGTKELILSTRK 670

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            + L F    +  + R   GVR    K G +         E    +      Y +     
Sbjct: 671 GQSLRFHEQTVRTVGRNASGVRGIKLKYGDLVQAATVV--EKDHLLTITELGYGKRTEFD 728

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG +G       P++G  +++
Sbjct: 729 EFRGHGRGTMGVRNILTAPQNG-VVAT 754



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 72/244 (29%), Gaps = 13/244 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG-------WI 530
            ++      +  T  G+      E+       +      +    ++ S            
Sbjct: 572 WLKVYNIPEASRTSKGKAIVNLLELQDELITAVIPIRTFRHDRYLLFSTEQGQVVKVPQD 631

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           +  +  S  ++A+  +E DSL        T  ++L +  G++  L             A 
Sbjct: 632 QFSRPRSTGINAISLRENDSLVDVKLTDGTKELILSTRKGQS--LRFHEQTVRTVGRNAS 689

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSE 647
            +        D+V A        LL ++  G     E  E   + R     +  L     
Sbjct: 690 GVRGIKLKYGDLVQAATVVEKDHLLTITELGYGKRTEFDEFRGHGRGTMGVRNILTAPQN 749

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             +      + D + V+     ++   +  I    R  +GVR+    +      +     
Sbjct: 750 GVVATKAVSSDDEIVVMSALGNVIRMKVSDISVQKRSARGVRIIRLDEDDRVVGLAVLQQ 809

Query: 707 EGLT 710
           E L+
Sbjct: 810 EILS 813


>gi|154483928|ref|ZP_02026376.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC
           27560]
 gi|149735419|gb|EDM51305.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC
           27560]
          Length = 833

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/751 (31%), Positives = 391/751 (52%), Gaps = 34/751 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E  Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K ARIVG+ +GK
Sbjct: 1   METSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELNNGPDKPHRKCARIVGDTMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y +LV +AQ +  RYPL+ G GNFG+ DGD AAA RYTEAR+++++  ++ 
Sbjct: 61  FHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAMRYTEARLSKISMEMVA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D V+F   ++E + EP V PS++PNLL NGTSGIAVGMAT+IP HN+ E   A + 
Sbjct: 121 DINKDTVEFTPNFDETEKEPSVLPSRYPNLLVNGTSGIAVGMATNIPPHNLTETINAIVK 180

Query: 206 LIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +IDN      + +IE+++E I GPDFPTG  I+  R+ I ++YR GRG  + RA   +E 
Sbjct: 181 IIDNKVEENRDTTIEEIMEIIKGPDFPTGATIL-GRKDIEQAYRTGRGKIKTRAVSEIET 239

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +  G   I+VTE+PY V K++L+EKIA L+  K++  + D+RDES ++   V+    R  
Sbjct: 240 MDNGKSRIIVTELPYMVNKAKLVEKIASLVKEKKVDGITDLRDESDQEGTRVVIEVRRDA 299

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           + ++++  ++  + ++  F + M  L     P+V+ L  +L E+L H+++V+ RR+ F +
Sbjct: 300 NANVILNQLYKHTQLQDSFGVIMLALVD-GEPKVLNLLQMLDEYLKHQKDVVTRRTKFEL 358

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLR 437
              + R  I+KGLLIA  NIDE+I IIR        K  ++ RF L++ Q  AI+++RLR
Sbjct: 359 NKAEERAHIIKGLLIALDNIDEVIKIIRGSRTTADAKKNLIERFGLSDAQSQAIVDMRLR 418

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  L    +++E  +L+A+ + + S+L    +    I  EI  +++ F        RRT
Sbjct: 419 QLTGLAREDLEAEYADLMAKIDYLKSILADENKLLTVIKEEIEVIRDKFGDE-----RRT 473

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGD 549
                         + +I +E   V ++N G+I+ +              +  +   + D
Sbjct: 474 KI---GINVGDLSDEDLIPEEDTVVAMTNLGYIKRMTVDNFKSQNRGGKGIKGMQTIDKD 530

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF- 606
            +K      T D IL L+  G+ Y L    +        G AI  L+ L   + I     
Sbjct: 531 FMKDMFMVSTHDYILFLTNTGRIYKLKCYEIPEAGRTARGMAIVNLLQLQPGEKISAMVQ 590

Query: 607 --VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAV 663
              ++    L++ + KG              + G   + +  ++++  V      D++ +
Sbjct: 591 MKEFEEDKYLIMATKKGTIKKTPIMAYTNIRKSGIQAITLREDDELIDVTISDNNDNIML 650

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           + +  + + F    + E  R   GVR            +  +  +G   +  +     + 
Sbjct: 651 ITKKGQGIKFRETDVRETGRSAMGVRGIELNQDDEVISMQLE-SQGECVLIVSANGMGKR 709

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  L  RGG G    K   ++G+ + +
Sbjct: 710 TPFTDFKLQNRGGKGVKCYKISDKTGEVVGA 740



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 71/215 (33%), Gaps = 6/215 (2%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
                  K   +   +        I     +         + A+  +E D L     +  
Sbjct: 585 ISAMVQMKEFEEDKYLIMATKKGTIKKTPIMAYTNIRKSGIQAITLREDDELIDVTISDN 644

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
            D I+L++  G+       ++         ++  I+LN + ++++  +      +L+VS+
Sbjct: 645 NDNIMLITKKGQGIKFRETDVRETGRSAMGVRG-IELNQDDEVISMQLESQGECVLIVSA 703

Query: 620 KGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
            G       ++     R GK      +   + E +       G+ + ++     ++   +
Sbjct: 704 NGMGKRTPFTDFKLQNRGGKGVKCYKISDKTGEVVGAKAVNDGNEIMMITNEGIVIRMFV 763

Query: 676 DQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
           D I  + R   GV+L +  D     V      +  
Sbjct: 764 DDISILGRVTLGVKLMNTGDKDDIVVASITKVKES 798


>gi|163868581|ref|YP_001609790.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476]
 gi|161018237|emb|CAK01795.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476]
          Length = 916

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/836 (30%), Positives = 407/836 (48%), Gaps = 99/836 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EMGL F   ++K
Sbjct: 3   SGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLVFNKPYRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE 
Sbjct: 63  SAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTEC 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +V+E +L  +D+D VDF+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP H
Sbjct: 123 RLEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +ALIDNP+I++++++E I GPDFPTGGII+  R  +  +Y  GRG   +RA
Sbjct: 183 NLSEVVDGCIALIDNPDITLDQIIEIIPGPDFPTGGIIL-GRSGVRSAYETGRGSIIMRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE+  G   I+V+EIPYQV K+ +IEK+AEL+  KRI  + D+RDES  D   V+ 
Sbjct: 242 KVDIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + +  ++++  ++  + ++T F  NM  L+ G  P+ M L  +L+ ++A R EV+ R
Sbjct: 302 ELKKDVVAEVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDMLRAFVAFREEVVSR 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R+ + ++    R  +L GL +A  NIDEIIA+IR    P+                    
Sbjct: 361 RTKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMERRWPAMDVAPLI 420

Query: 416 ----------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          ++L+E Q  AIL LRL+ L  L   +I  EL+ +  +      +L
Sbjct: 421 KLIDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDIL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +  + +  E+  ++E F+          +    S    A     +       +   
Sbjct: 481 ASRVRIMHIVKDELSALREEFATPRRTVFGFGSAEMESEDLIAPEDMVVTVSHSGYIKRV 540

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
                R+ +      S +  K+ D +     A+T   +L  S+ G  Y      L   + 
Sbjct: 541 PLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLGTP 600

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRK 637
           +  G A+  ++ L   + I T               ++  +++G     + S+ +   R 
Sbjct: 601 QSRGRALINMLPLQQGERITTIMPLPEDEASWSALDIMFATTRGTVRRNKLSDFVQVNRN 660

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKD 694
           GK  +K+  E+++  V   T  D V +   N + + F +  +     R   GVR  +   
Sbjct: 661 GKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVLDVRVFAGRNSVGVRGINLAK 720

Query: 695 G-------------------------------------GISDVICFKICEG--------- 708
           G                                      + D+I     +G         
Sbjct: 721 GDKVISMTILEHVEATSFERSAYIKRVMNERRAAGADADVEDIISLDEEDGGGETDLTDE 780

Query: 709 ---------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV--PKGFPRSGKFLSS 753
                       +  +   Y +  +     +  RGG G     P      GK +++
Sbjct: 781 RYAELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAA 836



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              LL VS  G        E   + R GK        K +   K+     V   D + +V
Sbjct: 789 EQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQDQIMLV 848

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLT 710
            +  +L+   ++ I    R  KGV + +  +G  +  V      E  T
Sbjct: 849 SDGGQLIRVPVEGIRTAGRSTKGVTIFNTAEGERVVSVERISEPEDDT 896


>gi|258650279|ref|YP_003199435.1| DNA gyrase subunit A [Nakamurella multipartita DSM 44233]
 gi|258553504|gb|ACV76446.1| DNA gyrase, A subunit [Nakamurella multipartita DSM 44233]
          Length = 831

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/773 (30%), Positives = 385/773 (49%), Gaps = 36/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  N+   +  + V ++  ++  ++ YA+S I  RA+PD+RDG KPVHRR+++ M + G
Sbjct: 1   MTGPNSGEHDRTEPVDIQQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRVLYGMYDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                +  KS+R+VG+V+G  HPHGD  +YD++VR+AQP+  RYP+I GQGNFG++  D 
Sbjct: 61  FRPDRSTVKSSRVVGDVMGNYHPHGDSPIYDTVVRMAQPWSLRYPMIDGQGNFGSMGNDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+TQ+A L+L G+ E  VD    Y+ +  EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTECRLTQLAMLMLDGIGEKTVDMVPNYDNKTVEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+  A +  ++NPE S E+     +E I GPDFPTG  ++  ++ I +
Sbjct: 181 GMATNIPPHNLREVASAVVWFLENPEASPEELLEASMERIQGPDFPTGA-LIVGKDGIAD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG  R+RA   +EE  +G   +VVTE+PYQV    L+E IA L    +I  + DI
Sbjct: 240 AYRTGRGSIRMRAVVNIEEDAKGRTILVVTELPYQVNPDNLVEAIAGLHKDGKIAGIADI 299

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ ++F  + ++T F  NM  +    VP+ + LD +
Sbjct: 300 ADESSDRIGMRLVITLKRDAVAKVVLANLFKHTALQTSFGANMLAIVD-GVPRTLRLDQM 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           +  ++AH+ EV+ RR+ +R+   + R  IL+GL+ A   +DE+IA+IR     +      
Sbjct: 359 ISLYVAHQVEVIVRRTQYRLDKAEERAHILRGLVKALDMLDEVIALIRRSPSAEESKAGL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E Q  AIL+++LR L  LE  +I  EL  L      +  +L   ++Q   I  
Sbjct: 419 MELLDVDEIQATAILDMQLRRLAALERQRIIDELAELERVIADLKDILAKPERQRAIIRD 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH- 536
           E+ E  +          RRT              + +I  E + V I+  G+ +  K+  
Sbjct: 479 ELTEAVDKHGD-----DRRTRLVPYDGD---VSVEDLIAVEDVVVTITRTGYAKRTKTDL 530

Query: 537 -------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                     +     K+ D +       T D IL  +  G+ Y   A  L   +    G
Sbjct: 531 YRAQRRGGKGVQGAALKQDDIVAHFFVCSTHDWILFFTNKGRVYRAKAYELPEANRNARG 590

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L+    ++ I        Y +   L++ +  G     E +   +N   G   + +
Sbjct: 591 QHVANLLAFQPDERIAEVIQIPHYQAAPYLVLATKGGLVKKSELAAFDSNRAGGIVAVNL 650

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
             ++++   V    +  + ++    + + F      +  M R   GV    +  G     
Sbjct: 651 RDDDELVGAVLCDANADLLLISAEGQSIRFHATDETLRPMGRATSGVLGMRFNAGDELLS 710

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   + EG   + +  R Y +  +     +  RGG G L  +   R GK + +
Sbjct: 711 MSV-VYEGAQVLVATERGYAKRTDIDEYPVQGRGGKGVLTIQYDRRRGKLVGA 762



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 6/161 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                 +LL+S +G++    A +      G   +  L +  N   ++++  V     ++L
Sbjct: 662 CDANADLLLISAEGQSIRFHATDETLRPMGRATSGVLGMRFNAGDELLSMSVVYEGAQVL 721

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLL 671
           V + +G A   +  E     R GK  L +       K+   + V  D  V  +     ++
Sbjct: 722 VATERGYAKRTDIDEYPVQGRGGKGVLTIQYDRRRGKLVGALIVDLDTEVYAITSGAGVI 781

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
                ++ +  R   GVRL +  +G     I     +  T 
Sbjct: 782 RTQAREVRKAKRQTMGVRLMNLSEGDSLVAIARNADDADTV 822


>gi|315224035|ref|ZP_07865876.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga
           ochracea F0287]
 gi|314946006|gb|EFS98014.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga
           ochracea F0287]
          Length = 839

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/770 (30%), Positives = 407/770 (52%), Gaps = 43/770 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M +MG+     +KK
Sbjct: 5   EKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+GK HPHGD +VYD++VR+AQ +  RY L+ GQGNFG++ GD  AA RYTEA
Sbjct: 65  SAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM + +E +L  +D++ VD + TY++   EP+V P++ PNLL NG++GIAVGMAT++  H
Sbjct: 125 RMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L++YI  PDFPTGG I+   E + E+++ GRG   +RA
Sbjct: 185 NLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGG-IIYGYEGVKEAFKTGRGRVIIRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   +E+  G  CIVVTE+PYQV  S L++K ++L+   R+  + D+RDESA     +++
Sbjct: 244 KAEFQEIK-GKDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  ++++T F +N   L     PQ++ L  ++  ++ HR +V++R
Sbjct: 303 ILKRDAVPNVVLNNLFKHTELQTSFSVNNIALVK-GRPQLLNLKDLIFHFVEHRYDVVYR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R+ IL+G +        + + I IIR  DKPK  +++ F LT+ Q +AI
Sbjct: 362 RTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPKEDLIAEFDLTDVQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L LR + K+   Q K E +  LAE   ++ +L   +++   I  E+ E+KE +     
Sbjct: 422 LALALRRINKVLIQQTKEEYEEKLAEIRDLEDILARKERRTEIIKEELLEIKEKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+T      A      + MI  + + + IS+ G+I+              V   A 
Sbjct: 480 ---RRSTI---EYAGGEFSVEDMIPDDKMVITISHAGYIKRTQLSEYKTQSRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             ++ D L+    +     +L  +  GK + +    +  G    +  AIQ LI++  +  
Sbjct: 534 TTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEGSKTAKGRAIQNLINIESDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I             Y S   L++ + KG        E     + G   + +   +++   
Sbjct: 594 IKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKEYSRPRQNGINAITIKEGDELIEA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGL 709
              +G   + +  ++ + + F+ +++  + R  +GVR       +  +  +I  +     
Sbjct: 654 KLTSGSSQLMLAVKSGRAIRFAEEKVRAVGRNSQGVRGIDLDTENDEVVGMIAIENPREE 713

Query: 710 TWIDSAGRSYNRSENDLL-------GWLGKRGGVGSLVPKGFPRSGKFLS 752
           T +  +   Y +               +  RGG G        ++G+ ++
Sbjct: 714 TVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITEKTGQLVA 763



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/493 (12%), Positives = 152/493 (30%), Gaps = 30/493 (6%)

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
               V+ R  +  +    +  V        +++    + A+  I      ++ +  E   
Sbjct: 331 NIALVKGRPQLLNLKDLIFHFVEHRYDVVYRRTDYELRKAKERIHILEGYMKVMATEDTM 390

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
              I +   +     DL+ E        E    L +  ++   + Q           +  
Sbjct: 391 GKAIEIIRFHDKPKEDLIAEFDLTDVQAEAILALALRRINKVLIQQTKEEYEEKLAEIRD 450

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE-- 425
             ++L R+        +  +EI +       +  E      + +   P      +++   
Sbjct: 451 LEDILARKERRTEIIKEELLEIKEKYGDERRSTIEYAGGEFSVEDMIPDDKMVITISHAG 510

Query: 426 -NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             +   +   + +S   + +    +   + L       +               +R  + 
Sbjct: 511 YIKRTQLSEYKTQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEI 570

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------ 538
                T  GR       +   DK     ++   +    + +N   + + K          
Sbjct: 571 PEGSKTAKGRAIQNLINIESDDKIKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKE 630

Query: 539 -------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   ++A+  KEGD L  A     + +++L    G+A       + +   + + ++
Sbjct: 631 YSRPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFAEEKVRAVGRNSQGVR 690

Query: 592 LLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESE-------IIANTRKGKTFL 642
            +     N ++V     ++     +LVVS  G        +            R GK   
Sbjct: 691 GIDLDTENDEVVGMIAIENPREETVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVK 750

Query: 643 KVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
            +S  EK   +  +  V  G+ + ++ ++   +  SID +  + R  +GV+L + K    
Sbjct: 751 TISITEKTGQLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRILGRATQGVKLINIKGKDS 810

Query: 698 SDVICFKICEGLT 710
              +   + E   
Sbjct: 811 IAAVTKVMKEDDD 823


>gi|189218175|ref|YP_001938817.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4]
 gi|189185033|gb|ACD82218.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4]
          Length = 873

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/802 (30%), Positives = 384/802 (47%), Gaps = 55/802 (6%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            +     ++    +V  V +   ++  ++ YA+S I  RA+PD+RDG KP  RRI+ AM 
Sbjct: 10  ENGNQQLDSPDNSSVHLVDVSEEMKSCFIDYAMSVIIARALPDVRDGLKPSQRRILFAMH 69

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL       K A+IVGE +G  HPHGDQ++Y +LV +AQP+  R  LI GQGNFG+I+
Sbjct: 70  ELGLAPNRKHLKCAKIVGETMGNFHPHGDQAIYPTLVHMAQPWAMREVLIDGQGNFGSIE 129

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTEAR++    L++  +D+D VDF   Y+E   EP VFP+ FPNL+ NG +G
Sbjct: 130 GDPPAAMRYTEARLSAAGALLMADMDKDTVDFVPNYDETRMEPSVFPASFPNLIVNGATG 189

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E  +  +ALID+P +S E+LLEYI GPDFPTGG+I+  RE IV  
Sbjct: 190 IAVGMATNIPPHNLSETIDGLVALIDHPGLSSEELLEYIKGPDFPTGGVIL-GREGIVNY 248

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           +  GRG  +VR    VEE+  G   IV+ EIPY V ++ L+EKI EL+  K I  + DIR
Sbjct: 249 FTTGRGSLKVRGEIHVEELRGGKSAIVIDEIPYNVNRASLVEKIGELVNQKVIQEIADIR 308

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES E+ R+V     R     ++  +++  + ++T F +NM  +   R P+ + L  +L 
Sbjct: 309 DESDENTRVV-IELKRDAVAKVVANNLYRHTPLQTTFAVNMVAIDRLR-PKSLNLKELLS 366

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--- 419
            +L HR EV+ RR+ F +     R E+L+G LIA   + E I IIR              
Sbjct: 367 CYLDHRHEVVTRRTRFDLNKALERAEVLEGFLIALSRLQEFIEIIRQSSNRDEARRKLLD 426

Query: 420 ------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + L+  QV+AIL+LRL  L  LE  +I  E   LL
Sbjct: 427 REFSPEWIESLGIPLDGQRMTEGAMYRLSLRQVEAILDLRLYQLTGLEREKIAGEYAELL 486

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            + ++   +L S ++ W  +  E+ E+KE +                     A  +  + 
Sbjct: 487 EKIKQFRLILASEEKIWAIVKAELLEIKEKYGNPRKTKIIPDEGEVAFEDLVANQRVVIT 546

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKE------GDSLKIALHAHTTDRILLLSTD 569
                 +  ++    RS +     +  +  ++       D ++   +A T D +L  +TD
Sbjct: 547 LTHNGFIKRTSLDSYRSQRRGGRGVIGMSTQDTGVEEEKDFVESLFNASTHDFLLFFTTD 606

Query: 570 GKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAF--------------VYDSTCK 613
           G+ Y      +       +      +++L   ++I +                 +D    
Sbjct: 607 GRVYIQRVYEIPEKERASKGKNIASILELKPTEEIASMLRIVANTQASDGRESSWDKEGY 666

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLI 672
           +   + KG       SE     + G T + +   +K+   +   G   + ++ +  + + 
Sbjct: 667 IFFCTLKGKVKKTPVSEFRNIRKGGITAISIEENDKLIDCLFTDGQKEIVLITKEGQSIR 726

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           FS   +  M R   GV     + G     +   +    T +  + +   +  +       
Sbjct: 727 FSESDVRPMGRNAAGVIGIDLQPGDEVVGMSI-VDHRATLLVVSEKGMGKRTSFEEYRKQ 785

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
           KRGG G +  K   ++GK + +
Sbjct: 786 KRGGQGVITMKTSDKTGKVVKA 807



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 69/177 (38%), Gaps = 6/177 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            ++A+  +E D L   L       I+L++ +G++      ++     +  A  + IDL  
Sbjct: 691 GITAISIEENDKLIDCLFTDGQKEIVLITKEGQSIRFSESDVRPMGRNA-AGVIGIDLQP 749

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVV 654
             ++V   + D    LLVVS KG        E     R G+  + + + +K    +K + 
Sbjct: 750 GDEVVGMSIVDHRATLLVVSEKGMGKRTSFEEYRKQKRGGQGVITMKTSDKTGKVVKAIT 809

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            +  D + V+     ++   +  + +  R  +GVRL           I   I +   
Sbjct: 810 VLDDDELLVLTLKGNVIRIHVKDLRKTGRNTQGVRLVQLDSEDKVTSIARIIPDKED 866


>gi|315638858|ref|ZP_07894030.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter
           upsaliensis JV21]
 gi|315481076|gb|EFU71708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter
           upsaliensis JV21]
          Length = 852

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/786 (31%), Positives = 407/786 (51%), Gaps = 44/786 (5%)

Query: 6   ISN-SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + N  N   +  +  + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++
Sbjct: 1   MENLFNKDSDTQI--IDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDL 58

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDGD
Sbjct: 59  GVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGD 118

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEARMT +AE +L+ +D+D VDF   Y++   EP V PS+ PNLL NG+SGIA
Sbjct: 119 GAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIA 178

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H++ E+ +  L L+DN E S+E+L+++I GPDFPT G I+  ++ I+++YR
Sbjct: 179 VGMATNIPPHSLNELVDGLLYLLDNKEASLEELMQFIKGPDFPTAG-IIYGKKGIIDAYR 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA+  + E       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDE
Sbjct: 238 TGRGRIKIRAKTHI-EKRANKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDE 296

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   V+    R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +
Sbjct: 297 SDREGIRVVIELKRDAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLIELLNLF 355

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRF 421
           L HR+ V+ RR+ + +Q    R  IL+GL IA  NIDE+IA+I+N          +V++F
Sbjct: 356 LTHRKTVIIRRTIYELQKARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAKF 415

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q +AIL+++L  L  LE  +I++EL  LL E  ++D +L S     + I  E++E
Sbjct: 416 GLSELQANAILDMKLGRLTGLEREKIENELAELLKEIARLDEILKSEALLEDLIREELKE 475

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           ++  F                           +       +           K       
Sbjct: 476 IRAKFDVPRITQIEDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHN 599
           A+   + D ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAE 595

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I+       +  +  L   +  G       SE       G   + +   +++   + V
Sbjct: 596 EKIMAIIPTSDFAESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIV 655

Query: 657 T----------------------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
                                        G  +  V +    + F + ++ E+ R  +GV
Sbjct: 656 ERDLIELSQASQDENLSEEASEENLENVGGKMLFAVTKRGMCIKFPLAKVREIGRVSRGV 715

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 716 TAIKFKEKNDELVGAVVIENDEQEVLSVSAKGIGKRTNAGEYRLQSRGGKGVICMKLTDK 775

Query: 747 SGKFLS 752
           + + +S
Sbjct: 776 TKELIS 781


>gi|117924379|ref|YP_864996.1| DNA gyrase subunit A [Magnetococcus sp. MC-1]
 gi|117608135|gb|ABK43590.1| DNA gyrase subunit A [Magnetococcus sp. MC-1]
          Length = 915

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/826 (30%), Positives = 400/826 (48%), Gaps = 88/826 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S+T        +++   ++  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G
Sbjct: 1   MTMSDTTPTAERLPINIEDEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMRELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            ++  ++KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDS
Sbjct: 61  NEWNRSYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRHLLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RMT++A  +L  +D++ V F   Y+    EP V P+K+PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEVRMTRLASELLADIDKETVAFGPNYDGSLKEPEVLPAKYPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  ALID+PE+    L++YI GPDFPTGG I   +  IV  Y  
Sbjct: 181 GMATNIPPHNLGEVIDATCALIDDPELDPRALMQYIPGPDFPTGGSI-HGQAGIVSGYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E    G   I+V E+PYQV K++L+E+IAEL+  K++  + D+RDES
Sbjct: 240 GRGSVIIRAKTVIETRKDGKETILVHELPYQVNKAKLVERIAELVREKKVTGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  +F  + M++ F +N   L     P  + L   L  +L
Sbjct: 300 DREGMRVVIEIKRDHQADVVLNQLFKHTAMQSSFGINALALVD-GRPVTLSLKAFLVAFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F +     R  IL+GL +A  NID IIA+IR                 
Sbjct: 359 KHRREVVTRRTIFELNKAQARAHILEGLAVALANIDRIIALIRAAKTSAEAKEGLMAERW 418

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                  +   ++L+ +Q  AIL++RL  L  LE  +I  E + 
Sbjct: 419 ERGPVEAMLARALGENDVRSAQFVEGGYTLSADQAQAILDMRLHRLTGLETEKIHEEFEE 478

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L E   +  +L S     + I  E+ E+KE ++       RRT   E   A        
Sbjct: 479 ILKEIAYLKGILASDGVLMDVIRQELLEIKERYANP-----RRTLIVE---AVGDFSIAD 530

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+I+          +      SA   K+ D ++    A T D I L
Sbjct: 531 LIPEEEMVVTVSHGGYIKRQPSLAYQAQRRGGKGKSATGVKDEDFVEQMFVASTHDTIFL 590

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            +  G+ + L    +   S    G+AI  L+ L   + +                 LL  
Sbjct: 591 FTDTGRVFKLKVYEIPSGSRLSRGKAIVNLLQLEEGEKVRQIVPIPVAEAEWGSWDLLFA 650

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---------TGDH-------- 660
           + +G       S        G   + +   + +  V  +          GD         
Sbjct: 651 TRRGLIKKTVLSNYANIRTTGIRAINLLEIDDLIGVALLPSSGDAELPEGDEGVDEELPE 710

Query: 661 -----------VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICE 707
                      + +  +  K + F+ +++  + R  +GVR    K + G+  +       
Sbjct: 711 DESSADAAPGRIMLFAQGGKAVRFADEKVRRVGRVSQGVRGMRLKGEDGVIALTVIDGEA 770

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +    + Y +  +        RG  G +      ++G  +S+
Sbjct: 771 VGQLLTITEKGYGKRSDLSQYPTKGRGTQGVIGMDVRDKTGNVVSA 816



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 45/139 (32%), Gaps = 9/139 (6%)

Query: 615 LVVSSKGNAFIVEESEIIANT----RKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGEN 667
           +++ ++G    V  ++          +G   +++  E+ +  +  + G+    +  + E 
Sbjct: 722 IMLFAQG-GKAVRFADEKVRRVGRVSQGVRGMRLKGEDGVIALTVIDGEAVGQLLTITEK 780

Query: 668 RKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
                  + Q P   RG +GV     +D   + V    + E    +    +         
Sbjct: 781 GYGKRSDLSQYPTKGRGTQGVIGMDVRDKTGNVVSALVVDEQDEVMVITDQGTVLRTKVD 840

Query: 727 LGWLGKRGGVGSLVPKGFP 745
              +  R  +G  V     
Sbjct: 841 SIRVAGRATMGVRVLNVAE 859



 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 3/110 (2%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L ++  G           +     + +  +   +   ++V+A V D   +++V++ +G
Sbjct: 773 QLLTITEKGYGKRSDLSQYPTKGRGTQGVIGMDVRDKTGNVVSALVVDEQDEVMVITDQG 832

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLV-VKVTGDHVAVVGENR 668
                +   I    R   G   L V+  E++  V      + V    E  
Sbjct: 833 TVLRTKVDSIRVAGRATMGVRVLNVAEGERVVSVARLAEAEEVDAFDEEG 882


>gi|294084097|ref|YP_003550855.1| DNA topoisomerase IV subunit A [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663670|gb|ADE38771.1| DNA topoisomerase IV, A subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 740

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/750 (53%), Positives = 527/750 (70%), Gaps = 11/750 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D  +N      E++   S   AL ERYLAYALSTI  R++PD+RDG KPVHRR++ A
Sbjct: 1   MANDTYTNPG----EHIDQTSFSDALSERYLAYALSTITSRSLPDVRDGLKPVHRRLLFA 56

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ LD G  FKKSAR+VG+V+GK HPHGD ++YD++VRLAQ F  RY L+ GQGNFGN
Sbjct: 57  MRQLKLDPGQGFKKSARVVGDVMGKFHPHGDAAIYDAMVRLAQEFAMRYRLVDGQGNFGN 116

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L G+DED+VDFR TY+ E  EPV+ P+ FPNLLANG 
Sbjct: 117 IDGDNAAAMRYTEARMTEVARLLLDGIDEDSVDFRPTYDGESEEPVLLPAGFPNLLANGA 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMATSIP HNV E+ +A+L LI +P  SI+ L++Y+ GPDFPTGG++VE  +SI 
Sbjct: 177 QGIAVGMATSIPPHNVIELADASLHLIKHPNASIDTLMQYVKGPDFPTGGLLVEPADSIR 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRGGFRVRARW +E+   G W IVVTEIPYQVQKSRLIE++AE++ AK++P+L D
Sbjct: 237 DAYATGRGGFRVRARWEIEKEKGGGWQIVVTEIPYQVQKSRLIERLAEMLNAKKLPVLAD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAED+RIVL PK+R L+P+++MES+F LSD+ETR PLN+NVL     P VM L G 
Sbjct: 297 IRDESAEDLRIVLEPKSRRLEPEIVMESLFKLSDLETRVPLNLNVLDATGRPGVMDLRGA 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L  WLAHR+ VL RR+ FR+  I  R+E+L+G LI YLN+DE+IAIIR  + P+  +++R
Sbjct: 357 LNAWLAHRQVVLQRRAHFRLGKIAHRLEVLEGYLIVYLNLDEVIAIIRESEHPRDALIAR 416

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F LTE Q +AIL++RLRSLR+LEE  +++E DNL+AE+  + +LL +   QW +IA EI+
Sbjct: 417 FDLTETQANAILDMRLRSLRRLEEMALRTERDNLVAEQADLQNLLANEDLQWKKIATEIK 476

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           ++K+ F+K      RR T    +        + ++E+EPIT++ S +GWIR++K H    
Sbjct: 477 DMKDSFAKH----DRRRTTLADAPEIDFDPTEILVEREPITIICSAKGWIRAMKGHQELD 532

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S   FKEGD   + LHA TTD+ILL + +G+ YTL    L  GRG GE + LL DL  + 
Sbjct: 533 SEFKFKEGDGPGLVLHAETTDKILLFADNGRFYTLAGDRLPRGRGFGEPVSLLTDLPADI 592

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           +I+T     +  K+LV +S G+  IV+    IA TR GK  L +  + +      V GD 
Sbjct: 593 EIITLLRGVAG-KMLVAASTGHGLIVDMQSAIAQTRSGKQILNLPGDARAVACCMVDGDM 651

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VA VG NRKLL F I ++PEM+RG+GV LQ +KDGG++DV  +   +GL+W   AG    
Sbjct: 652 VASVGVNRKLLAFPISELPEMTRGRGVILQRFKDGGLADVTVYHSDKGLSW--QAGGGRT 709

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R+E D+  W+ KR G G L P GFPR  KF
Sbjct: 710 RTETDMSNWIAKRAGAGKLPPTGFPRPAKF 739


>gi|330444524|ref|YP_004377510.1| DNA gyrase subunit A [Chlamydophila pecorum E58]
 gi|328807634|gb|AEB41807.1| DNA gyrase, A subunit [Chlamydophila pecorum E58]
          Length = 829

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/763 (32%), Positives = 386/763 (50%), Gaps = 31/763 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  
Sbjct: 4   NEEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMRQLSLTPGAKH 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K A+I G+  G  HPHG+  +Y +LVR+AQP+  RYPL+ GQGNFG++DGD AAA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQPWAMRYPLVDGQGNFGSLDGDPAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T  A  +++ +D+D VD    Y+E   EP VFP+KFPNLL NG+SGIAVGMAT+IP
Sbjct: 124 EARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPTVFPAKFPNLLCNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ EA L L+ NP  SIE+++E + GPDFPTGG I+   E I  +Y  GRG  +V
Sbjct: 184 PHNLGELIEATLLLLSNPTASIEEIMEVMPGPDFPTGG-IICGHEGICSTYHTGRGKIKV 242

Query: 253 RARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR  VEE   +    IV+TEIPY V KSRLIE+IA+L+  K +  + D+RDES ++   
Sbjct: 243 RARLHVEENTEKHRESIVITEIPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKEGVR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    +    ++++  ++  +D++T F  NM  L    +P+ M +  ++  W+ HR EV
Sbjct: 303 VVLELKKGESSEVMINRLYKFTDVQTTFGANMLALDK-NLPRTMNIHRMISAWIRHRAEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FSLTENQV 428
           L RR+ F +   + R  IL+G L A   +D ++  I++ D  +         +  T+ Q 
Sbjct: 362 LRRRTRFELNKAETRAHILEGYLKALSCLDAVVKTIQDSDSKEHAKQQIIELYGFTDAQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL LRL  L  LE  + + E D LL +      +L   +   + I  E++++ +    
Sbjct: 422 VAILELRLYQLTGLEAEKTRKEYDELLDKIAYYKRVLADEELVKDIIRTELQDLVKYHKT 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 R+TT      AD     + +I  E + + IS   +++ +               
Sbjct: 482 P-----RKTTIE--FDADDVRDIEDIITDESVIITISGDDYVKRMPIKVFREQRRGGHGV 534

Query: 549 DSLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL--- 596
               +            A T D +L+ +  G+ Y +    L  G    +   L+  L   
Sbjct: 535 SGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWIKVWRLPEGERRSKGKSLINFLEGI 594

Query: 597 ---NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
                   I+    +++   L + + +G    V         +KG   L++   +++   
Sbjct: 595 RPGEQVAAILNVKSFENADFLFLATKQGVVKKVPLDAFSNPRKKGIRALEIDDNDELIAA 654

Query: 654 VKVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
             +  +H  V +  +    + F  D++  M R  +GVR  S K+     V C  + +  +
Sbjct: 655 CHIENEHDRVMLFTKLGMAVRFPHDKVRPMGRAARGVRGVSLKNQEDCVVSCQIVTDNQS 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +      + +           RGG+G        R+G  L +
Sbjct: 715 VLVVCENGFGKRSLVSDFRETNRGGIGVRSILINERNGDVLGA 757



 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 5/154 (3%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +  DR++L +  G A   P   +         ++ +   N    +V+  +     
Sbjct: 654 ACHIENEHDRVMLFTKLGMAVRFPHDKVRPMGRAARGVRGVSLKNQEDCVVSCQIVTDNQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G       S+     R G       +   + + +  V     D + ++    
Sbjct: 714 SVLVVCENGFGKRSLVSDFRETNRGGIGVRSILINERNGDVLGAVPVADNDSILLMSGQG 773

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           + +  S+  +  M R  +GVRL   KDG +   +
Sbjct: 774 QAIRISMQDVRIMGRSTQGVRLVHLKDGDVLVAM 807


>gi|296313969|ref|ZP_06863910.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839398|gb|EFH23336.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768]
          Length = 918

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/851 (28%), Positives = 399/851 (46%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTE RM ++A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D PE  I++L+  +  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      I++ EIPYQV K++L+EKI EL+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L     P+++ L  
Sbjct: 300 DLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDE+I +I+           
Sbjct: 359 ILAEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLSRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I  +  N++A+      +L   ++    I  E+ E K  F        RR+   
Sbjct: 479 GLDQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+I+   +              A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  ++                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEVSDGIEDETADSENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 50/131 (38%), Gaps = 11/131 (8%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVIC 702
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G  +  +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 703 FKICEGLTWID 713
               E  + + 
Sbjct: 893 VAEDESESELS 903



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 794 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 853

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 854 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 883


>gi|168335263|ref|ZP_02693364.1| DNA gyrase subunit A [Epulopiscium sp. 'N.t. morphotype B']
          Length = 874

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/768 (32%), Positives = 403/768 (52%), Gaps = 41/768 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E+ L     ++K
Sbjct: 7   DKIIPVDIKDEMKNCYIDYAMSVIVARALPDVRDGLKPVHRRILYAMDELNLSPDKQYRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+ +GK HPHGD S+YD++VRLAQ F  RYPL+ G GNFGN+DGDSAAA RYTEA
Sbjct: 67  SARIVGDTMGKYHPHGDASIYDAMVRLAQNFNTRYPLVDGHGNFGNVDGDSAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++   +L  +D++ VDFR  ++E   EP V P+++PNLL NG+SGIAVGMAT+IP H
Sbjct: 127 RMSKLTMYMLSDIDKETVDFRPNFDESIEEPTVLPARYPNLLVNGSSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALAL----------IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           N+ E+  A + +           +  E   E L+E ++GPDFPTGG I+  R  I ++YR
Sbjct: 187 NMGEVIXAVIKIIDNYTGXNETNEKKETEXEDLMEIVVGPDFPTGGQIL-GRYGIEQAYR 245

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  ++RA+  +EE+  G   I++TEIPYQV KS+LIEKIAEL+  K++  +  IRDE
Sbjct: 246 TGKGKVKIRAKTEIEEMSAGKTAIIITEIPYQVNKSKLIEKIAELVKLKKVDGITGIRDE 305

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  D   ++    R ++ ++++  ++  S ++  F +NM  L     P V  L  +L+ +
Sbjct: 306 SDRDGMRIVIELRRDVNANIILNQLYKFSQLQDTFSINMLALI-NGEPHVFNLKEMLEAY 364

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIA--YLNIDEIIAIIRNED---KPKPVMVS 419
           L H+++V+ RR+ F +     R  I++G LI      ID +I +IRN     + K  ++ 
Sbjct: 365 LDHQKQVITRRTEFELDKAQARAHIIEGFLIVLGADKIDLVINLIRNSKTVAEAKEKLIE 424

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +  L+E Q  AI+++RLR L  LE  ++  E + L  +   + SLL    Q    I  E+
Sbjct: 425 KIGLSEIQAQAIMDMRLRVLTGLEHDKLTQEFNELXDKIAYLKSLLEHEDQLLKVIKEEL 484

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
             V+E F+       RR+   E+S  D     + +I++E + V I++ G+I+        
Sbjct: 485 IVVREKFTDP-----RRS---ELSLLDDEIDIEDLIDEEEVVVTITHFGYIKRXPLVTYK 536

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--A 589
             K     +  ++  E D ++        D I+  +  G+AY + A  +          A
Sbjct: 537 EQKRGGRGVIGVNTIEEDFIEKLFTTSNLDFIMFFTNKGRAYKIKAYKIPEASRTARGLA 596

Query: 590 IQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  L+ LN ++ I   F          L +++ KG       +      + G   L +  
Sbjct: 597 IVNLLHLNVDEKISAVFPVKQNEHERYLTMITKKGLIKKTNITAFNNIKKGGIIALTMQD 656

Query: 647 EEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++  V + T    + +  +    ++F    I    R  KGVR  +             
Sbjct: 657 ADELVGVYETTDQDKIIIATKKGLGIMFEGKNIRPTGRTAKGVRAINLSKEDYVISATI- 715

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             EG   + +      +          +RGG G ++ K   ++G  ++
Sbjct: 716 PKEGEQILIATKNGIGKRTRIDEFKSQRRGGKGLIIYKVDDKTGDVVA 763



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 69/171 (40%), Gaps = 8/171 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            + AL  ++ D L         D+I++ +  G        N+       + ++  I+L+ 
Sbjct: 648 GIIALTMQDADELVGVYETTDQDKIIIATKKGLGIMFEGKNIRPTGRTAKGVR-AINLSK 706

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656
              +++A +     ++L+ +  G        E  +  R GK  +    ++K   VV +  
Sbjct: 707 EDYVISATIPKEGEQILIATKNGIGKRTRIDEFKSQRRGGKGLIIYKVDDKTGDVVAITS 766

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
               + + ++     ++   + QI  + R  KGV+L +  DG    V+C +
Sbjct: 767 VSDSNGLLMITSEGVIIRIKVSQISSLGRYAKGVKLINLTDG--IHVVCME 815


>gi|237741013|ref|ZP_04571494.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13]
 gi|229431057|gb|EEO41269.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13]
          Length = 811

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/750 (32%), Positives = 396/750 (52%), Gaps = 14/750 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKK
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L+ +D++ +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP H
Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA+IDN +I I +L+ YI GPDFPTG II   R  I+E+Y+ GRG  +VR 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIID-GRAGIIEAYKTGRGKIKVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L 
Sbjct: 241 KIDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ R
Sbjct: 301 EVKKGEEPELVLNKLYKYTDLQTTFGVIMLSLV-NNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   + A  +++  +L    + +  +  E+ E+KE ++    
Sbjct: 420 LDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYNDKRR 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                     +        +  +       V        ++ K     +SAL+  E D  
Sbjct: 480 TKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQKRGGKGVSALNTIEDDFA 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI--QLLIDLNHNQDIVTAFV-- 607
           +  + A T D I++ +  GK Y + A  +              +I+L+  + +    V  
Sbjct: 540 EKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEKVRDTIVIK 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
            +    +++ ++  G        E       G   +K   ++ +  V  +     + + +
Sbjct: 600 EFSPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEILI 659

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
              +     F  D I    R  +GV+  + ++G                +      Y + 
Sbjct: 660 ATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDTVVSAMLIKNPETDILTITENGYGKR 719

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +        RGG G +  K   ++GK +S
Sbjct: 720 TSLDEYPQYNRGGKGVINLKASEKTGKVVS 749



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 53/149 (35%), Gaps = 5/149 (3%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + DG         + +     + ++ +     +  +    + +    +L ++  G     
Sbjct: 661 THDGYCTRFLTDTIRATGRSTQGVKAITLREGDTVVSAMLIKNPETDILTITENGYGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
              E     R GK  + + + E   K+  V++V+ D  +  +  N  ++  SI +I  + 
Sbjct: 721 SLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVSEDEELMCITSNGIVIRTSISEISRIG 780

Query: 683 RG-KGVRLQSYKDGGISDVICFKICEGLT 710
           R  +GVR+    D      I     E   
Sbjct: 781 RATQGVRIMKVADDEKVAAITKIKKEEEL 809



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  L        +V+        +L+ ++S G   
Sbjct: 710 TITENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVSEDEELMCITSNGIVI 769

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
               SEI    R   G   +KV+ +EK+  + K+  +   
Sbjct: 770 RTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEEL 809


>gi|261365069|ref|ZP_05977952.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996]
 gi|288566489|gb|EFC88049.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996]
          Length = 921

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/851 (28%), Positives = 399/851 (46%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTE RM ++A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D PE  I++L+  +  PDFPTG  I      + E
Sbjct: 181 GIAVGMATNIPPHNLTDTVNACLRLLDEPETEIDELINILQAPDFPTGATIY-GLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      I++ EIPYQV K++L+EKI EL+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L     P+++ L  
Sbjct: 300 DLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDE+I +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLSRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I  +  N++A+      +L   ++    I  E+ E K  F        RR+   
Sbjct: 479 GLDQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEETKTNFGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    + +G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDCLVGAAQTSGSDDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F        L  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 45/113 (39%), Gaps = 10/113 (8%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +   +     V   D + ++     L+   ++QI E  R   GVRL +  +G 
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEGE 885



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 20/89 (22%), Gaps = 5/89 (5%)

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWIDSAG 716
            V     N       I      ++G +G    +   ++G +         + L  I S  
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSG- 855

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                           R   G  +     
Sbjct: 856 -GVLIRTKVEQIRETGRAAAGVRLINLDE 883



 Score = 41.7 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
                +  +I    R   G   + +   E++  + +V  +
Sbjct: 857 VLIRTKVEQIRETGRAAAGVRLINLDEGEQLVSLERVAEE 896


>gi|307720589|ref|YP_003891729.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294]
 gi|306978682|gb|ADN08717.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294]
          Length = 826

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/755 (32%), Positives = 395/755 (52%), Gaps = 15/755 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN L   +V+++++   L+  YL Y++S I  RA+PD+RDG KPVHRRI++AM ++ L F
Sbjct: 2   SNLLNNGDVQSINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           GA +KKSARIVG+VIG+ HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG++DGDSAAA
Sbjct: 62  GAKYKKSARIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMELVDGQGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT+ A  +L+ ++++ V+  D Y+    EP V P++ PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN  EI     AL++NP I++ +++E+I  PDFPTGG I+  ++ I+++Y  GRG
Sbjct: 182 TNIPPHNPTEIMNGLKALLENPNITLPEIMEHIKAPDFPTGG-IIFGKKGIMDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  + E       IV+ E+PYQV K+RLIE +A L+  K I  + +IRDES  D
Sbjct: 241 RIKVRAKTHI-EKKGNRDVIVIDELPYQVNKARLIENVANLVKDKMIDGVSEIRDESDRD 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R    ++++ ++F  + M+T F + + +  + + P++  L  ILK ++ HR
Sbjct: 300 GMRVVIELKRDAISEIVLNNLFKQTSMQTTFGI-IMLSILNQEPRIFGLIDILKHFINHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTE 425
           + ++ RR+ F ++    R  IL+GL  A   ID++I +IR        K  +VS F  +E
Sbjct: 359 KTIIIRRTIFDLEKAKARAHILEGLKKAIDIIDDVIRVIRASKTEEAAKENLVSEFDFSE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  +I+ +RL  L  LE  +I++EL  L+   E ++S+L S       IA E  EV   
Sbjct: 419 IQAASIVAMRLGRLTGLEIEKIENELAELMKFIEYLESILKSEDVLHGIIAEEFDEVLTT 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           ++                          +       +           K      +A+  
Sbjct: 479 YTTKRRTEIEDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPLASYEKQKRGGKGKTAVTT 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
            E D ++     +T D +L ++  G+ + L    +        G+A+  LI+L  ++ I 
Sbjct: 539 YEDDFIENFFTCNTHDTLLFVTDRGQLHWLKVYRIPEGSRTAKGKAVVNLINLQADEQIQ 598

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
           +      +     L+  +  G       SE       G   + +   + +          
Sbjct: 599 SIIPTTDFSEDKSLVFFTKNGIVKRTNLSEFSNIRSNGVRAIVLDDNDALITAKIADKSI 658

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++ +V +  + + F I++  E  R  +GVR   +K +G           +    +  A 
Sbjct: 659 KYLFIVTKLAQCIKFEIEKTREQGRSTRGVRGIKFKHEGDEVVDANIIASDDQEILIVAE 718

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +   +  +     L  RGG G +  K   ++GK++
Sbjct: 719 KGIGKRTDAGEYRLTNRGGSGVIAMKMTAKTGKYI 753



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV--SSEEKMKL 652
             ++ +    +     ++L+V+ KG     +  E     R   G   +K+   + + +  
Sbjct: 696 EGDEVVDANIIASDDQEILIVAEKGIGKRTDAGEYRLTNRGGSGVIAMKMTAKTGKYIVG 755

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            + V     +  + +  K++   +  I + SR   GV +     G     I 
Sbjct: 756 CLMVDESMDMMALTKAGKMIRVDMQTISKSSRNTSGVYIVK---GDEVVSIS 804


>gi|167469188|ref|ZP_02333892.1| DNA gyrase, A subunit [Yersinia pestis FV-1]
          Length = 862

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/760 (32%), Positives = 373/760 (49%), Gaps = 48/760 (6%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPV RR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VYD++
Sbjct: 1   VGRALPDVRDGLKPVKRRVLFAMNVLGHDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTI 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF   Y
Sbjct: 61  VRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDFVPNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +  LA I++  ISIE L+
Sbjct: 121 DGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSEVIDGCLAYIEDENISIEGLM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQV 277
           EYI GPDFPT   I+  R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV
Sbjct: 181 EYIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQV 239

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIAEL+  KR+  +  +RDES +D   ++    R    ++++ +++ L+ ++ 
Sbjct: 240 NKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQV 299

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
            F +NM  L     P+++ L  IL  ++ HRREV+ RR+ F ++    R  IL+ L IA 
Sbjct: 300 TFGINMVAL-SQGQPKLLNLKDILVAFVRHRREVVTRRTIFELRKARDRAHILEALAIAL 358

Query: 398 LNIDEIIAIIRNEDKPKP-------------------------------------VMVSR 420
            NID II +IR    P                                       +   +
Sbjct: 359 ANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERAGDDAARPEWLEAEFGIRDGK 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E   LL    ++  +L +  +    I  E+ 
Sbjct: 419 YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIGELIFILENPDRLMEVIREELV 478

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
            +KE ++          T               +       V         + +      
Sbjct: 479 AIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGK 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNH 598
           SA   KE D +   L A+T D IL  S+ G+ Y +    L        G  I  L+ L  
Sbjct: 539 SAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEP 598

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I        Y+  C + + ++ G       +E       G   + ++  +++  V  
Sbjct: 599 NERITAILPVREYEEGCHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL 658

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G + V +     K++ F   Q+  M R   GVR  +         +     +G   + 
Sbjct: 659 TDGSNEVMLFSALGKVVRFPEGQVRSMGRTATGVRGINLNGDDRVISLIIPRGDGE-ILT 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                Y +           R   G +  K   R+GK + +
Sbjct: 718 VTENGYGKRTAVAEYPTKSRATQGVISIKVSERNGKVVGA 757


>gi|255068314|ref|ZP_05320169.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256]
 gi|255047433|gb|EET42897.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256]
          Length = 924

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/851 (28%), Positives = 399/851 (46%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTE RM ++A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D PE  I++L+  +  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      I++ EIPYQV K++L+EKI EL+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L     P+++ L  
Sbjct: 300 DLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDE+I +I+           
Sbjct: 359 ILAEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLSRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I  +  N++A+      +L   ++    I  E+ E K  F        RR+   
Sbjct: 479 GLDQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    + +G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDHLVGAAQTSGSDDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F        L  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 10/113 (8%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +   +     V   D + ++    KL+   +++I E  R   GVRL +  +G 
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGKLIRTKVEEIRETGRAAAGVRLINLDEGE 885



 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 22/89 (24%), Gaps = 5/89 (5%)

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWIDSAG 716
            V     N       I      ++G +G    +   ++G +         + L  I S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGG 856

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           +               R   G  +     
Sbjct: 857 K--LIRTKVEEIRETGRAAAGVRLINLDE 883



 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
                +  EI    R   G   + +   E +  + +V  +
Sbjct: 857 KLIRTKVEEIRETGRAAAGVRLINLDEGETLVSLERVAEE 896


>gi|261838062|gb|ACX97828.1| DNA gyrase subunit A [Helicobacter pylori 51]
          Length = 828

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/767 (33%), Positives = 413/767 (53%), Gaps = 31/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNLINETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + ++ NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLGNPNAGLDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
           KE FS      +RRT   E   A +    + +I  EP+ V +S +G+             
Sbjct: 478 KEQFS-----SQRRTEIQE---AYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  + +  E D ++    A+T D +L ++  G+ Y L    +        G+AI  
Sbjct: 530 RGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEE 648
           LI L  ++ I+       +     L   +  G       SE  +N    G   + +   +
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGD 649

Query: 649 KMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++     V  +  H+ +       + F ++ + E+ R  +GV      +           
Sbjct: 650 ELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVIS 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +G   +  +     +           RGG G +  K   ++G  +S
Sbjct: 710 DDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756



 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 7/145 (4%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G     P  ++         +  +    ++  +    + D   KLL VS  G        
Sbjct: 671 GIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISDDGNKLLSVSENGLGKQTLAE 730

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SR 683
                +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI  I E   R
Sbjct: 731 AYREQSRGGKGIIGMKLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGR 790

Query: 684 -GKGVRLQSYKDGGISDVICFKICE 707
              GV+L    D  +    C K  E
Sbjct: 791 NTSGVKLIDTADKVVYANSCPKEEE 815


>gi|37522651|ref|NP_926028.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
 gi|35213652|dbj|BAC91023.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
          Length = 840

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/764 (30%), Positives = 377/764 (49%), Gaps = 30/764 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +   +LR  ++  YL YA+S I  RA+PD RDG KPVHRRI+ AM E+GL     ++K A
Sbjct: 4   IIPTNLRNEMQRSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMHELGLGPDRPYRKCA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD +VYD+LVRLAQ F  RY LI G GNFG++D D  AA RYTE R+
Sbjct: 64  RVVGDVLGKYHPHGDSAVYDALVRLAQDFSTRYLLIDGHGNFGSVDNDPPAAMRYTECRL 123

Query: 137 TQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           T +    +L  ++ + VDF D ++    EP V PS+ P LL NG++GIAVGMAT+IP H 
Sbjct: 124 TPLTRDTLLADLEAETVDFSDNFDGSQQEPTVLPSRLPQLLLNGSAGIAVGMATNIPPHQ 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +   AL+ NP + I +L+ YI GPDFPTGG I+  +  I E+Y  GRG   +R  
Sbjct: 184 LGELVDGVTALLANPNLGIPELMRYIPGPDFPTGGTIL-GQSGIREAYTTGRGSITMRGV 242

Query: 256 WCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
             +E +          IV+TE+PYQV K+ LIEKIAEL+  KRI  + DIRDES  D   
Sbjct: 243 AAIETIQVRGRPDREAIVITELPYQVCKAALIEKIAELVNDKRIDGISDIRDESDRDGLR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R   P +++ ++F L+ ++T F  NM  L     P+++ L   L+ ++  R EV
Sbjct: 303 AVIELKRDAYPRVVLNNLFKLTPLQTNFGCNMLALV-NGEPRLLNLKEFLQTFIDFRAEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ + ++    R  IL G+L+A  N++ +IA+IR  D     +  +V+RF L+E Q 
Sbjct: 362 ITRRTHYELRKARERDHILMGMLVALANLESVIALIRAADDTASARAELVNRFELSEAQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL ++LR L  +E  +I++E   L+A+   +  +L   ++    I  E+   K+  + 
Sbjct: 422 EAILQMQLRRLTGMEAGRIEAEHRELIAKIADLSDVLERRERIDQIIRDELLTAKQRLND 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                  +           A  +  ++  E   +           +  +   S    +E 
Sbjct: 482 PRRTIIEKAEGEIDDADLIANQEMVVLVTEQGYIKRLPVDTFDRQRRATRGKSGARMRED 541

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D+++  +     D +L  +  G  Y L    + +G    +   +  L+ +   + + +  
Sbjct: 542 DAVEHFITCCNHDTVLFFTNRGVVYALRGYQIPAGSRTAKGTPVVQLLPIPIEEKVTSIV 601

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVA 662
               + S   L++++  G       +        G   + +   ++++ V +    D + 
Sbjct: 602 PVQEFASDEFLVMLTRTGFIKKTALAAFANLRANGLIAIGLEEGDELRWVRRARAEDDIL 661

Query: 663 VVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-----------G 708
           V       + F    +Q+  + R  +GV+    + G     +    CE           G
Sbjct: 662 VGSRAGMAIRFRADEEQLRPLGRTARGVKSMELRKGDELVSMDILSCEQRERAEANGECG 721

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +      + +           RGG+G +  K   +  +  +
Sbjct: 722 PWVLVVTADGFGKRVPFSEFRAQNRGGMGVIATKFRDQGDELAA 765



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 18/186 (9%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI-QLLIDLN 597
            L A+  +EGD L+    A   D IL+ S  G A    A           A     ++L 
Sbjct: 636 GLIAIGLEEGDELRWVRRARAEDDILVGSRAGMAIRFRADEEQLRPLGRTARGVKSMELR 695

Query: 598 HNQDIVTAFVYDSTCK------------LLVVSSKGNAFIVEESEIIANTRKG--KTFLK 643
              ++V+  +     +            +LVV++ G    V  SE  A  R G      K
Sbjct: 696 KGDELVSMDILSCEQRERAEANGECGPWVLVVTADGFGKRVPFSEFRAQNRGGMGVIATK 755

Query: 644 VSS-EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
                +++  +  V+  D + +V     ++    ++I + SR   GVR+Q   +      
Sbjct: 756 FRDQGDELAALRVVSCEDELMIVTARGVIIRQQSEEISQQSRAATGVRVQRLDEDDTIVG 815

Query: 701 ICFKIC 706
           +     
Sbjct: 816 VAVVPE 821


>gi|269303149|gb|ACZ33249.1| DNA gyrase, A subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 834

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/762 (31%), Positives = 387/762 (50%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   DEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMKQLSLSPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD  AA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L L+ NP+ S++++L+ + GPDFPTGG I+   E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLLLANPQASVDEILQVMPGPDFPTGG-IICGSEGIRSTYTTGRGKIKVR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IA L+  K +  + D+RDES +D   V
Sbjct: 244 ARLHVEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR+EV+
Sbjct: 304 VLEIKKGESSEIIINRLYKFTDVQVTFGANMLALDK-NLPRTMSIHRMISAWIRHRKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ + +   + R  +L+G L A   +D ++  IR        K  ++  F  TE Q  
Sbjct: 363 RRRTRYELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIESFGFTEPQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +I+ E + LL +      +L+      + I  E++++ +    +
Sbjct: 423 AILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDEGLVKDIIRNELQDLLKHHKVA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRTT      AD     + +I  E + + IS   +++ +                
Sbjct: 483 -----RRTTIE--FDADDIRDIEDIITNESVIITISGDDYVKRMPVKVFKEQRRGGHGVT 535

Query: 550 SLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--- 597
              +            A T D +L+ +  G+ Y L    L  G    +   ++  L    
Sbjct: 536 GFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             +++        +D+   L + + +G    V         +KG   L++   +++    
Sbjct: 596 PGEELAAILNIKNFDNAGFLFLATKRGVVKKVSLDAFSNPRKKGIRALEIDEGDELIAAC 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  +++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIVSDEEKVMLFTHLGMAVRFPHEKVRPMGRTARGVRGVSLKNEEDKVVSCQIVTENQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    + + +           RGGVG        R+G  L +
Sbjct: 716 LIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERNGNVLGA 757



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 55/171 (32%), Gaps = 7/171 (4%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                   ++++L +  G A   P   +         ++ +   N    +V+  +     
Sbjct: 654 ACHIVSDEEKVMLFTHLGMAVRFPHEKVRPMGRTARGVRGVSLKNEEDKVVSCQIVTENQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +L+V  +G        +     R G       +   +   +  +     D + ++    
Sbjct: 714 SVLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERNGNVLGAIPVTDHDSILLMSSQG 773

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEG-LTWIDSAG 716
           + +  ++  +  M R  +GVRL   K+G  +  +      E     +  + 
Sbjct: 774 QAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDDEVLSGSE 824


>gi|237749806|ref|ZP_04580286.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879]
 gi|229374556|gb|EEO24947.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879]
          Length = 831

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/758 (34%), Positives = 411/758 (54%), Gaps = 34/758 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKS 75
           +K V +  +++E YL Y++S I  RA+P+ RDG KPVHRRI++AM   +GL   A +KK 
Sbjct: 10  IKPVRIDDSIKESYLDYSMSVIVGRALPNARDGLKPVHRRILYAMKHNLGLTSNAKYKKC 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEV+G  HPHGD ++YD+LVR+AQ F  R  L+ GQGNFG+IDGD AAA RYTEA+
Sbjct: 70  AKIVGEVMGNYHPHGDTAIYDALVRMAQDFSMRLELVDGQGNFGSIDGDKAAAMRYTEAK 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+V E +L  +++D VDF   Y+  + EP + P++FPNLL NG++GIAVGMATSIP H 
Sbjct: 130 MTKVGESMLFDIEKDTVDFVPNYDGSEKEPAILPTRFPNLLVNGSNGIAVGMATSIPPHR 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +  I+NP+  IE +L  I GPDFPTGG I+  R+ I+E+Y+ GRG  ++RA+
Sbjct: 190 LDEVVDALIYRINNPQSEIEDILPLIEGPDFPTGG-IIHGRQGIIEAYKTGRGRIKIRAK 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE+       IVV EIPYQV K+RL E+I  L   K +  + ++RDES +D   ++  
Sbjct: 249 VHVEKTKTK-DVIVVDEIPYQVNKARLFEQIDTLAKDKVVEGIAEVRDESDKDGMRLVIE 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++  S MET F + + +   GR P++  L  +L  +++HR+ ++ RR
Sbjct: 308 LKREAMSEIVLNHLYKSSAMETTFGI-ILLAIEGREPKIFTLLELLDIFISHRKTIVIRR 366

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAIL 432
             F ++    RV IL+G  IA  NIDEI+A+IR  + P+      +SRFSLTE Q  AIL
Sbjct: 367 IIFELEKARARVHILEGYRIALENIDEIVALIRASENPEKAQSELMSRFSLTEIQSKAIL 426

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE  +I++E   L+A   +++S+L S  +    I  E+ EV++ FS     
Sbjct: 427 EMRLQRLTGLERDKIENEYRELVALIAELESILRSEDKINGVIKEELLEVQKQFSSP--- 483

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   E   A      + +I  E + V +S+RG+++                  + +
Sbjct: 484 --RRTLIEENYDA---IDIEDLIPNEAVVVTMSHRGYVKRVLLKTYEKQHRGGKGKISGN 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDI 602
             + D ++    A+T D I+ ++  G+ Y L    +        G+A+  LI L   + I
Sbjct: 539 THDDDFIQSFFVANTHDTIMFITNRGQLYWLKVYRIPEAGRTAIGKAVVNLIGLQDGEKI 598

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
           +T      ++    L+  +  G       SE       G   + +  ++++     +   
Sbjct: 599 MTTITTSDFNEDKSLVFFTKNGIVKRTNLSEYKNIRNNGVRAINLDEDDELISASIIDSS 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDS 714
              + +  +  + + F+ D I ++ R  +GV    +K  +  +      K  E    +  
Sbjct: 659 VKELFIATKEGQCIRFAADSIRDIGRVARGVIGIKFKVANDSVIAATTIKGDEDK-LLSI 717

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     +           RGG G +  K   ++GK +S
Sbjct: 718 SELGIGKQTLAGSYSTINRGGKGVIAMKLTNKTGKLVS 755



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 7/147 (4%)

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGN 622
            + + +G+     A ++         +  +     N  ++ A        KLL +S  G 
Sbjct: 663 FIATKEGQCIRFAADSIRDIGRVARGVIGIKFKVANDSVIAATTIKGDEDKLLSISELGI 722

Query: 623 AFIVEESEIIANTRKGK--TFLKV-SSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQ 677
                        R GK    +K+ +   K+  V+ V      + V+  + K++   ++ 
Sbjct: 723 GKQTLAGSYSTINRGGKGVIAMKLTNKTGKLVSVLSVNDSNMDLMVLTTSGKMIRVPLES 782

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICF 703
           I E  R   GV++ S  +         
Sbjct: 783 IREAGRNTSGVKIVSLGNKDKVAFASI 809


>gi|317155004|ref|YP_004123052.1| DNA gyrase subunit A [Desulfovibrio aespoeensis Aspo-2]
 gi|316945255|gb|ADU64306.1| DNA gyrase, A subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 815

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/754 (33%), Positives = 406/754 (53%), Gaps = 29/754 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   L++ YL Y+LS I  RAIPD+RDG KPVHRRI+ AM ++G     ++KKSAR+V
Sbjct: 5   ISIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHDLGNYHNRSYKKSARVV 64

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 65  GDVIGKYHPHGDSAVYDALVRMAQEFSMRDTLVDGQGNFGSIDGDAAAAMRYTEVRMARL 124

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
               L  +++  VDFR  Y+    EP V P+K PNLL NGT+GIAVGMAT+IP HN+ E+
Sbjct: 125 CSEFLGDIEKQTVDFRPNYDNTMQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLSEL 184

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  + L+DNP  ++E ++ ++ GPDFPTGG++    + + ++Y  GRG  ++R    +E
Sbjct: 185 IDGCVHLLDNPGCTVEDMMAFVKGPDFPTGGLVYGG-QGLYDAYTTGRGSIKIRGVVEIE 243

Query: 260 EVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E GRG    IV+ EIPY + KS L+EKIA L+  K+I  + D+RDES      ++    R
Sbjct: 244 ETGRGKKEAIVIREIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRRGIRIVLDLKR 303

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++ +++  + +ET F +NM  +  G+ P ++ L  +L  +L HRREV+ RR+ F
Sbjct: 304 GAIADIIINALYKYTPLETSFGINMMAVV-GKRPMLLNLKSVLDYFLDHRREVVIRRTKF 362

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLR 435
            +   ++RV IL+GL IA  NIDE++ +IR    P       ++RFSL+E Q  AIL++R
Sbjct: 363 DLDKCEKRVHILEGLRIALDNIDEVVKLIRASKSPDEAKEALMARFSLSEIQAKAILDMR 422

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  ++  EL  LL + E   S+LN+     + I  E++E+KE +S       R
Sbjct: 423 LQKLTGLEHDKLLEELAELLKKIEYFTSILNNEDVLKSVIRDELKEIKENYSTP-----R 477

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           R+     +    A   + +I  E   V +S RG+I+          +     +S +   +
Sbjct: 478 RSELL--TANPDAIDIEDLIPDEETVVTLSQRGYIKRTPLSNYTAQRRGGKGISGVQTGD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
           GD +   +       ++L +  GK + + A  +  G  + +   +  L+ L+ ++ I TA
Sbjct: 536 GDFIHTFMLTTNHQHLVLFTNLGKMFKIKAHQVPEGSRYAKGGHVANLLPLDKDECITTA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                +D     L ++ KG                G   + +   +++ +V ++  D   
Sbjct: 596 LSLREFDDDRFFLFLTKKGMIKRSSIGLYGNCRSTGIRAVNLRDGDELMMVREIEPDVDC 655

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRSY 719
            +V  +   + F+I+    + R   GV+  + +              E    +  +   +
Sbjct: 656 ILVTRDGSAIRFNINDARPLGRTTAGVKGVALRGDDEVVACVVTGDPERDQLLTVSAGGF 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           RGG G L  +   ++GK + +
Sbjct: 716 GKRTGIDQYRQQSRGGKGILNMRLTNKTGKVVGA 749



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 62/183 (33%), Gaps = 7/183 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            + A++ ++GD L +          +L++ DG A      +          ++ +     
Sbjct: 631 GIRAVNLRDGDELMMVREIEPDVDCILVTRDGSAIRFNINDARPLGRTTAGVKGVALRGD 690

Query: 599 NQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVV 654
           ++ +      D    +LL VS+ G        +    +R GK  L +    K   +    
Sbjct: 691 DEVVACVVTGDPERDQLLTVSAGGFGKRTGIDQYRQQSRGGKGILNMRLTNKTGKVVGAR 750

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEM-SRG-KGVRLQSYKDGGISDVICFKICEGLTW 711
            V   D V ++    K++  S+ ++ +   R  +GVRL               +      
Sbjct: 751 MVNESDDVILLTSANKIIRMSVSEVSQTRGRATQGVRLVRMDANNSVIGFELVMEGEEEL 810

Query: 712 IDS 714
            D 
Sbjct: 811 KDV 813


>gi|312879128|ref|ZP_07738928.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260]
 gi|310782419|gb|EFQ22817.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260]
          Length = 816

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/766 (32%), Positives = 406/766 (53%), Gaps = 29/766 (3%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   ++  +    V  + L   ++  YL YA+S I  RA+PD RDG KPV RR+++AM E
Sbjct: 1   MDQDSSQTDLFHKVIPLPLEEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRVLYAMLE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    AFKKSAR+VGE +GK HPHGD ++Y+++ RL+Q F  RYPL+ GQGNFG+IDG
Sbjct: 61  LGLRHNQAFKKSARVVGETMGKYHPHGDAAIYETMARLSQDFSLRYPLVDGQGNFGSIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTEAR+  + E +L  +DE+ V++   ++E   EP+V PS+ PNLL NG++GI
Sbjct: 121 DPPAAMRYTEARLHSLGEEMLADIDEETVNWGPNFDESLQEPLVLPSRVPNLLVNGSTGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT++P HN++E+ +A  AL+++P+I + +L+  + GPDFPTGG+I+  R+ IV++Y
Sbjct: 181 AVGMATNMPPHNLREVIDATCALLEDPQIELGELMALLPGPDFPTGGVIL-GRDGIVDAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG   VR    +E+  RG   IV+TEIPY V K+ LIE IA+   +  +  + D+RD
Sbjct: 240 KTGRGKVIVRGCADIEDGRRGRKAIVITEIPYMVNKTSLIETIAKGAQSGHLDGITDLRD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+   +R  DP+L++  ++  + +++ F +    L     P+V+ L  IL+ 
Sbjct: 300 ESNREGIRVVLELHRDADPNLVLRQLYSRTQLQSTFGVINLALVD-GRPRVLTLHQILQV 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +L HRR V+ RR+  R++  + R  I++GL+ A   ID++IA+IR+   P   K  +V  
Sbjct: 359 FLDHRRAVVRRRTEHRLRKAEERAHIVEGLVRALDLIDQVIALIRSASDPASAKAALVET 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
              +E Q  AIL++RL+ L  LE  +++ EL  LL + E+  S+L +       +  E++
Sbjct: 419 LGFSEVQAQAILDMRLQRLTGLERSKLEEELAQLLQDIERYRSILANPSILDGVVRGELQ 478

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-- 538
           E++  +        RRT   +   A +    + +I +  I VV+S  G++R +       
Sbjct: 479 EIRAAYED-----DRRTRIED---AVEDVSAEDLIPESEIVVVLSRDGFLRRMPLQDYRC 530

Query: 539 ------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQ 591
                  +     +  D + +     T   + L ++ G+ + +          G G+ + 
Sbjct: 531 QSRGGKGVKGASTRGEDEIALVTVTTTHRTLYLFTSRGRVFAIRGFTLPEPKTGKGKHVS 590

Query: 592 LLIDLNHNQDIVTAFV--YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
             + L   + +VT      D    +  V+ +G A  +  +E+    R G+  L ++ E+ 
Sbjct: 591 TFVSLEEGERVVTLRDSRLDGARFVFFVTQRGVAKRLPVTELDGINRAGRRILGLAPEDT 650

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  V    G D + +     + L     +     R   GVR     +G +  V C  I  
Sbjct: 651 IARVRFTGGEDELLLTTAQGQTLRVPEGEFRPQGRTAHGVRGVRLDEGDLV-VGCDVIEP 709

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G   +  + R   +           RGG G    K   R+G  + +
Sbjct: 710 GRQVLFISERGIGKRTPYDEFTAHHRGGGGVRAMKLVDRTGDLVGA 755



 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L +S  G     P     +    G  ++ +  ++   D+V A+      +L+V+S+KG
Sbjct: 712 QVLFISERGIGKRTPYDEFTAHHRGGGGVRAMKLVDRTGDLVGAWGVREDDELVVISAKG 771

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
               +   EI +  R   G   +++   +++  V  +
Sbjct: 772 RMVRLLAGEISSLGRAATGYKVVRLDEGDEVADVSII 808


>gi|222824141|ref|YP_002575715.1| DNA gyrase, subunit A [Campylobacter lari RM2100]
 gi|222539363|gb|ACM64464.1| DNA gyrase, subunit A [Campylobacter lari RM2100]
          Length = 858

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/782 (32%), Positives = 408/782 (52%), Gaps = 46/782 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+K
Sbjct: 8   DSDIENIDIESSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDGD AAA RYTE
Sbjct: 68  KSARIVGDVIGKYHPHGDVAVYDALVRMAQDFSMRYPSVDGQGNFGSIDGDGAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 ARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L LIDN E S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+
Sbjct: 247 AKTHI-EKRANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P+V  L  +LK +L HR+ V+ 
Sbjct: 306 IELKRDAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKVFSLIELLKLFLNHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N           + +F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQKFGLSELQSNA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I +EL  LLAE E++D +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIDNELKELLAEIERLDEILKSEALLENLIKDELKEIRSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L  ++ I+     
Sbjct: 545 IENFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH----- 660
             +D +  L   +  G       SE       G   + +   +++   + V  D      
Sbjct: 605 TDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTAIIVARDENEMSN 664

Query: 661 ----------------------------VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
                                       +  V +    + F + ++ E+ R  +GV    
Sbjct: 665 QALEDEENLENEVLENNEELENVAVGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIK 724

Query: 692 YKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +K+     V    I  +    +  + +   +  +     L  RGG G +  K   ++   
Sbjct: 725 FKEKNDELVGAVVIENDAQEILSVSAKGIGKRTDAGEYRLQSRGGKGVICMKLNAKTKDL 784

Query: 751 LS 752
           +S
Sbjct: 785 IS 786


>gi|315187333|gb|EFU21089.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6578]
          Length = 809

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/758 (35%), Positives = 411/758 (54%), Gaps = 28/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++  V  V +   ++E YL YA+S I  RA+PD+RDG KPV RRI++AM EMGL     F
Sbjct: 4   LKGKVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKS RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP++ GQGNFG+IDGD  AA RYT
Sbjct: 64  KKSGRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++ ++AE +L+ ++++ VDF   Y+E   EP V P+  P LL NG SGIAVGMAT+IP
Sbjct: 124 EAKLHKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A  A+IDNPEI  + LL Y+ GPDFPTGG I+  ++ I  +Y  G+GG  V
Sbjct: 184 PHNLGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGG-IIFGKKGIRSAYLTGKGGVVV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR  +E +  G   IVVTEIPY V KS L+E++A L+  K+I  + +IRDES  +   +
Sbjct: 243 RARLSLETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   R + P +++  +F ++ ++T F +N   L  G  PQ + L  I++ +++HR+EV+
Sbjct: 303 VFELKRGVIPKVVINRLFSMTPLQTTFHVNALALV-GGKPQTLTLKEIIQHFISHRKEVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ + ++  + R  IL+GL IA  NIDE+IAII+        +  ++ RF L+E Q  
Sbjct: 362 TRRAQYDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRRFGLSERQAQ 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I  EL+  L   E++  LL S ++    +  E  E+ + +   
Sbjct: 422 AILDMRLQKLTSLETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLELAKGYGDE 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE-- 547
                RRT     +   +    + +I+KE + V++S  G I+ +   +        K   
Sbjct: 482 -----RRTEIV--AEEAEDLDIEDLIQKEDMVVLVSRDGLIKRMPVSAYRRQGRGGKGLM 534

Query: 548 ------GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHN 599
                  D +     A T D IL LS +GKAY L    +        G++I+ L+ L+ +
Sbjct: 535 GGKLSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVSQGKSIRSLVQLSPD 594

Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + +        ++   ++ ++++KG A  +    +     +G   + +   + +      
Sbjct: 595 EQVSAVVSVETFEEEREVFMITAKGLAKRLPVPALSNARTRGVIAIGLEKGDYLVDAFLT 654

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            G   V +V      L    ++   M R  +GV     + G         + EG   +  
Sbjct: 655 EGKGEVMIVTRRGHGLRCKEEEFRSMGRAARGVTAVKLEPGDEV-CGAVPVEEGKDLLLV 713

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +           RG  G +V K   R+G+  +
Sbjct: 714 TSGGYGKRVGFSQFTAHGRGTKGQIVYKVSARTGELAA 751



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 6/173 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
            + +  + A+  ++GD L  A        +++++  G           S       +   
Sbjct: 631 NARTRGVIAIGLEKGDYLVDAFLTEGKGEVMIVTRRGHGLRCKEEEFRSMGRAARGV-TA 689

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE-EKM 650
           + L    ++  A   +    LL+V+S G    V  S+  A+ R  KG+   KVS+   ++
Sbjct: 690 VKLEPGDEVCGAVPVEEGKDLLLVTSGGYGKRVGFSQFTAHGRGTKGQIVYKVSARTGEL 749

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
             V+ V   D V +V     ++  ++  I  + R   GV++ + +       +
Sbjct: 750 AAVLSVEAKDDVMIVTAQGNIIKLAVKDISVLGRQAAGVKVVNLEKPDYVVSV 802



 Score = 40.9 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 49/133 (36%), Gaps = 2/133 (1%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                RS+   +  ++A+  + GD +  A+       +LL+++ G    +      +   
Sbjct: 673 KEEEFRSMGRAARGVTAVKLEPGDEVCGAVPVEEGKDLLLVTSGGYGKRVGFSQFTAHGR 732

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTFLK 643
             +   +        ++      ++   +++V+++GN   +   +I        G   + 
Sbjct: 733 GTKGQIVYKVSARTGELAAVLSVEAKDDVMIVTAQGNIIKLAVKDISVLGRQAAGVKVVN 792

Query: 644 VSSEEKMKLVVKV 656
           +   + +  V +V
Sbjct: 793 LEKPDYVVSVDRV 805


>gi|300780142|ref|ZP_07089998.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           genitalium ATCC 33030]
 gi|300534252|gb|EFK55311.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           genitalium ATCC 33030]
          Length = 879

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/770 (30%), Positives = 374/770 (48%), Gaps = 24/770 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D +S       + +  + +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRII+A
Sbjct: 1   MSDDTLSGD---TYDRIFPIDINEEMQTSYIDYAMSVIVGRALPDVRDGMKPVHRRIIYA 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     ++ KSAR V + +G+ HPHGD ++YD+LVRLAQP+V RYPL+ GQGNFG+
Sbjct: 58  MYDSGYRPERSYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQPWVMRYPLVDGQGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTE +MT +A  +++ + E+AVDF   Y+ +  EP V PS+ PNLL NG+
Sbjct: 118 RGNDGPAAMRYTECKMTPLAMEMVRDIRENAVDFSPNYDGKAQEPDVLPSRVPNLLLNGS 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
           SGIAVGMAT+IP HN+ E+ EA          + + +++  +E + GPDFPT G+IV   
Sbjct: 178 SGIAVGMATNIPPHNLGELAEAIYWILDNHDADEKTTLDACMERVKGPDFPTAGMIV-GD 236

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I ++Y  GRG  R+R    +EEVG     IV+TE+PY V     I  IAE + A ++ 
Sbjct: 237 SGIKDAYTTGRGSIRMRGVTEIEEVG-TRQVIVITELPYNVNPDNFISGIAEQVAAGKMT 295

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            +  I DE S      ++    R   P +++ +++  S +ET F  NM  L    VP+ +
Sbjct: 296 GISKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSPLETNFSANMLSLVD-GVPRTL 354

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            LD +L+ ++AH+ EV+ RR+ FR+   ++R  IL+GL+ A   +DE+IA+IR       
Sbjct: 355 RLDQMLRYYVAHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDE 414

Query: 416 VMVSRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                     + E Q DAIL ++LR L  LE  +I  +L  + AE      +L   ++Q 
Sbjct: 415 AREGLMSLLDVDEVQADAILAMQLRRLAALERQKIVDDLAAIEAEIADYKDILAKPERQR 474

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +A E+REV +             T         A     +          +     +S
Sbjct: 475 AIVADELREVVDKHGDERRTKLVAATGDVTEEDLIARENVVVTITATGYAKRTKVDAYKS 534

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI 590
            K     +     K+ D +K      T D IL  +  G+ Y L A  L        G+ +
Sbjct: 535 QKRGGKGVRGAELKQDDVVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAGRAARGQHV 594

Query: 591 QLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L++    + I        Y     L++ +  G       ++  +    G   + ++  
Sbjct: 595 ANLLEFQPEEKIAQVIQIQTYQDAPYLVLATRDGRVKKSRLTDYESARSAGLIAINLNEG 654

Query: 648 EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICF 703
           + +     V   D + +V E  + + F+ D   +  M R   GV+   ++       +  
Sbjct: 655 DTLIGASLVGDDDDILLVSEQGQSIRFTADDEQLRPMGRATAGVKGMRFRGDDQLLAMT- 713

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +G   + +    Y +           RGG+G +  K  P+ GK + +
Sbjct: 714 TVSDGQYLLVATSGGYGKRTPIAEYNPQGRGGMGVMTFKYTPKRGKLIGA 763



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 6/156 (3%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
             D ILL+S  G++    A +      G   A    +    +  ++          LLV 
Sbjct: 665 DDDDILLVSEQGQSIRFTADDEQLRPMGRATAGVKGMRFRGDDQLLAMTTVSDGQYLLVA 724

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGDH-VAVVGENRKLLIF 673
           +S G       +E     R G   +         K+   + V  D  +  +     ++  
Sbjct: 725 TSGGYGKRTPIAEYNPQGRGGMGVMTFKYTPKRGKLIGALAVEEDDQIFAITSAGGVIRT 784

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            ++QI   SR   GVRL    D      I   + + 
Sbjct: 785 EVNQIRPSSRATMGVRLVDLGDDVELLAIDVNVEDE 820



 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 2/136 (1%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F+  D L           +L+ ++ G     P          
Sbjct: 685 DEQLRPMGRATAGVKGMRFRGDDQLLAMTTVSDGQYLLVATSGGYGKRTPIAEYNPQGRG 744

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G  +           ++ A   +   ++  ++S G     E ++I  ++R   G   + +
Sbjct: 745 GMGVMTFKYTPKRGKLIGALAVEEDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVDL 804

Query: 645 SSEEKMKLVVKVTGDH 660
             + ++  +     D 
Sbjct: 805 GDDVELLAIDVNVEDE 820


>gi|332673551|gb|AEE70368.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Helicobacter pylori
           83]
          Length = 828

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/764 (33%), Positives = 404/764 (52%), Gaps = 25/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNLINETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK-----EPITVVISNRGWIRSLKSHS 537
           KE FS      +RRT   EV          A             V   +           
Sbjct: 478 KEQFS-----SQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               + +  E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI 
Sbjct: 533 KGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLIS 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMK 651
           L  ++ I+       +     L   +  G       SE  +N    G   + +   +++ 
Sbjct: 593 LAPDEKIMATLSTKDFSDEHSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELV 652

Query: 652 LVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
               V  +  H+ +       + F ++ + E+ R  +GV      +            +G
Sbjct: 653 SAKIVDKNAKHLLIASYLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISDDG 712

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  +     +           RGG G +  K   ++G  +S
Sbjct: 713 NKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 7/135 (5%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G     P  ++         +  +    ++  +    + D   KLL VS  G        
Sbjct: 671 GIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISDDGNKLLSVSENGLGKQTLAE 730

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SR 683
                +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI  I E   R
Sbjct: 731 AYREQSRGGKGIIGMKLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGR 790

Query: 684 -GKGVRLQSYKDGGI 697
              GV+L    D  +
Sbjct: 791 NTSGVKLIDTADKVV 805


>gi|111219513|ref|YP_710307.1| DNA gyrase subunit A [Frankia alni ACN14a]
 gi|111147045|emb|CAJ58692.1| DNA gyrase, subunit A, type II topoisomerase [Frankia alni ACN14a]
          Length = 834

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/770 (30%), Positives = 390/770 (50%), Gaps = 37/770 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
                + ++ + +   ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G    
Sbjct: 6   PPPPGDRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + K +R+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPL+ G GNFG+   D  AA 
Sbjct: 66  RGYFKCSRVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM  +A  +L+ +D++ VDF   Y+    EP+V PS+FPNLL NG  GIAVGMAT
Sbjct: 126 RYTEARMAALAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMAT 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRL 245
           +IP HN++E+       +D+ E + E+LLE     I GPDFPT G ++  R  I ++YR 
Sbjct: 186 NIPPHNLREVATGVQWALDHAEATDEELLEALIGIIKGPDFPTSG-LIVGRSGIEDAYRT 244

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG  R+RA   VEE   G   +VVTE+PYQV    L EKIAEL+   ++  + D+RDE 
Sbjct: 245 GRGSIRMRAVVNVEENK-GRTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGISDVRDET 303

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SA   + ++    R     +++ +++  + ++  F +NM  +    VP+ + LD +++ +
Sbjct: 304 SARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVD-GVPRTLRLDQMIRYY 362

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRF 421
           + H+ +V+ RR+ ++++    R+ +L GLLIA  ++DE+I++IRN +        ++ RF
Sbjct: 363 VEHQVDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVISLIRNAESADAARGQLMERF 422

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +L+E Q  AIL+++LR L  LE  +I  E   L A   +++++L S  +Q   I  E+ E
Sbjct: 423 TLSEIQATAILDMQLRRLAALERQRIIDEAAELRARISELEAILASPVRQRQIIGEELAE 482

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH----- 536
           V E F        RRT              + +I +E + V ++  G+ +  K+      
Sbjct: 483 VVEKFGDE-----RRTRLVPFEGDMS---IEDLIAQEDVVVTVTRGGYAKRTKTDLYRSQ 534

Query: 537 ---SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
                 +     +E D ++      T   +L  +  G+ Y   A  L       +   + 
Sbjct: 535 RRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVA 594

Query: 592 LLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            ++  + ++ I              L++ + +G       S+  +N   G   + +  ++
Sbjct: 595 NILAFSQDERIAEVIALKDYEVAPYLVLATKRGLCKKTALSDFDSNRAGGLVAINLRDDD 654

Query: 649 KMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYK-DGGISDVICF 703
           ++     V  GD + +V  N + + F  D   +  M R   GV    +  +  +  +   
Sbjct: 655 ELIAARLVAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDAEDELLSMDVV 714

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   + +    Y +        +  RGG G L  K     G  + +
Sbjct: 715 VPGTTADLLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKIVSTRGGLVGA 764



 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVT-GDHVAVVGE 666
           T  LLV +S G A     +E     R GK  L    VS+   +   + V   D +  +  
Sbjct: 719 TADLLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKIVSTRGGLVGALVVDPDDQLYAIAS 778

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           N  +L      +    R   GVRL   + G     +        T
Sbjct: 779 NGGVLRTIAKDVRRAQRQTMGVRLIDLETGVQVVGVARNADAEDT 823


>gi|298368898|ref|ZP_06980216.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282901|gb|EFI24388.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314]
          Length = 920

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/851 (28%), Positives = 399/851 (46%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTE RM ++A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D PE  I++L+  +  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      I++ EIPYQV K++L+EKI EL+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L     P+++ L  
Sbjct: 300 DLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDE+I +I+           
Sbjct: 359 ILAEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLSRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I  +  N++A+      +L   ++    I  E+ E K  F        RR+   
Sbjct: 479 GLDQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEETKTNFGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    + +G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTSGSDDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F        L  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 45/113 (39%), Gaps = 10/113 (8%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +   +     V   D + ++     L+   ++QI E  R   GVRL +  +G 
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEGE 885



 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 20/89 (22%), Gaps = 5/89 (5%)

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWIDSAG 716
            V     N       I      ++G +G    +   ++G +         + L  I S  
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSG- 855

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                           R   G  +     
Sbjct: 856 -GVLIRTKVEQIRETGRAAAGVRLINLDE 883



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
                +  +I    R   G   + +   E +  + +V  +
Sbjct: 857 VLIRTKVEQIRETGRAAAGVRLINLDEGETLVSLERVAKE 896


>gi|313126395|ref|YP_004036665.1| DNA gyrase subunit a [Halogeometricum borinquense DSM 11551]
 gi|312292760|gb|ADQ67220.1| DNA gyrase subunit A [Halogeometricum borinquense DSM 11551]
          Length = 861

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/777 (31%), Positives = 387/777 (49%), Gaps = 33/777 (4%)

Query: 1   MGVDNISNSNTL--VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  D          +   V+   +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI+
Sbjct: 1   MSSDAPDKFQKDAGIAAEVQNARIEQEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+E G+   ++ +KS+ IVGE +G  HPHGD ++YD+L R+AQ F  RYPL+ GQGNF
Sbjct: 61  YAMNEAGVSARSSHRKSSSIVGETMGDYHPHGDSAIYDALARMAQDFSMRYPLVDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGD  AA RYTEARM  +AE +L+ +D+D VDF+  Y++   EPVV PS FPNLL N
Sbjct: 121 GSVDGDPPAAMRYTEARMAPIAEELLEDIDKDTVDFQSNYDDRKQEPVVLPSSFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+SGIAVGM+T+IP HN+ E+ +A   LI+NP+ ++E L+EY+ GPDFPTG  IV  + +
Sbjct: 181 GSSGIAVGMSTNIPPHNLGEVIDATTHLIENPDCTVEDLMEYVKGPDFPTGANIV-GKNA 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           + ++Y+ GRG  RVRA + V+E G     IV+TE+PYQ  K+RLIE+IA+ +   +I  +
Sbjct: 240 VHKAYKTGRGRIRVRAEFEVDEDGDN---IVITELPYQENKARLIERIADDVNDGKIEGI 296

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES  D   V+    R  +PD++  +  +   +E+ F +    L     P+V+ L 
Sbjct: 297 RDLRDESDRDGIRVVVELKRGANPDVVK-NQLLEHHLESTFGVINLALVD-GQPRVLTLK 354

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--- 415
             LKE+L HRREV+ RRS + +   + R  IL+G L A  NID+++  IRN +       
Sbjct: 355 ETLKEYLDHRREVVRRRSEYELGEAEDRAHILEGRLKALENIDDVVETIRNSESRDDAKA 414

Query: 416 ------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                         +  F  +E+Q + I+ ++L SL  +E  +IK E + +    ++++ 
Sbjct: 415 ALRGEMTVEVDGEPLPTFDFSEDQANHIVAMQLGSLTSMEAAEIKDEYEEVQDRIDRLNE 474

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +LN+  +    I  E+  +K+ +           T         A     ++  E   + 
Sbjct: 475 ILNNPDELDAVIKSELTAIKDEYDDERRTSFIEDTGTVTHEDLIAEEDVVVVVTEDDYIK 534

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                  R+       +     KEGD +     A T D +L  +  G+ Y L    +   
Sbjct: 535 RMPLDTFRAQHRGGKGIIGTDLKEGDRVSSVFVASTHDYLLYFTNHGQVYKLKTYQIPEM 594

Query: 584 RG--HGEAIQLLIDLNHNQDIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEIIANTR 636
                G++   L++L+  ++I                L + +  G        +      
Sbjct: 595 SRTARGKSAVNLLELDDGEEITAVVNTADIEDETDKYLTMATQNGYVKRTSVEKFQNILT 654

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK- 693
            G    K+  ++++  V    G H + +   +   + F    +  M R  +GVR    + 
Sbjct: 655 TGIIATKLDEDDELADVEVTDGSHDLVLASRDGMAIRFDESDVRAMGRSARGVRGMKLEG 714

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           D  +  V           +      Y +  +        R G G +  K   R+G  
Sbjct: 715 DDELVGVAAVDEDRHNWVLTVTQNGYGKRSDIERYRRQSRNGKGLIDIKTNDRNGPV 771



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 7/125 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           + L  + ++V     D      +L V+  G     +       +R GK  + + + ++  
Sbjct: 710 MKLEGDDELVGVAAVDEDRHNWVLTVTQNGYGKRSDIERYRRQSRNGKGLIDIKTNDRNG 769

Query: 652 LVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
            V  +     GDH+ V+ E+ ++L   ++ I  + R   GV +    +G     +     
Sbjct: 770 PVCAMETVGYGDHLFVMSESGQILRTPVEDISTVGRNTMGVTVMDMDEGDHVASVDVYNV 829

Query: 707 EGLTW 711
                
Sbjct: 830 GSDEV 834


>gi|330994747|ref|ZP_08318669.1| DNA topoisomerase 4 subunit A [Gluconacetobacter sp. SXCC-1]
 gi|329758008|gb|EGG74530.1| DNA topoisomerase 4 subunit A [Gluconacetobacter sp. SXCC-1]
          Length = 736

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/731 (51%), Positives = 518/731 (70%), Gaps = 5/731 (0%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                +++   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR+++AM ++ LD  A
Sbjct: 2   DTTAGHIEDTKLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMVYAMQQLKLDPTA 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG+IDGD+AAA R
Sbjct: 62  GFKKCARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+T VA+ +L+G+DED+VDFR TY+ E+ EPVV P+ FPNLLANG +GIAVGMATS
Sbjct: 122 YTESRLTAVAKALLEGIDEDSVDFRPTYDGEEHEPVVLPAAFPNLLANGAAGIAVGMATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV EIC AALALI  P  +  +LL ++ GPDFPTGG IVE R++I+ +Y  GRG F
Sbjct: 182 IPPHNVGEICAAALALIRKPATTTAELLAHMPGPDFPTGGSIVEDRDAILRAYETGRGSF 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R+R++W VE+   G+W IVVTEIPYQVQKSRLIE++A+L+  K++PLL DIRDES  D+R
Sbjct: 242 RIRSKWDVEQGRFGTWQIVVTEIPYQVQKSRLIEQVADLMEQKKLPLLADIRDESTTDIR 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL PK+R ++P +LME++F  + +E+RF LNMNVL   +VP V  L  +L+ WL HR +
Sbjct: 302 LVLEPKSRGIEPAVLMETLFRATQLESRFGLNMNVLGADQVPGVRSLKEVLQAWLDHRHD 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RRS+ R+QA+DRR+EIL G L  YLN+DE+I I+R ED  K  +++ F LTE Q D+
Sbjct: 362 VLLRRSANRLQAVDRRLEILNGFLAVYLNLDEVIRIVREEDDAKSALIAAFDLTELQADS 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +LN+RLRSLR+LEE +I++E   L AEK+ +  LL +  Q+W  IA EI+++++ F    
Sbjct: 422 VLNMRLRSLRRLEEMEIRNEHARLSAEKQALHDLLENEGQRWKHIAGEIKDIQKTFG-GG 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            LG+RR+   +             +E++P+TV++S +GWIR+++ H  D  AL FKEGD 
Sbjct: 481 TLGKRRSLLADAPVEI-DVEAALPVERDPLTVILSQKGWIRTVRGHGQDPQALKFKEGDD 539

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L +A+  H+ DR+ + +TDG+A+TL   +L  GRG G+ ++LLIDL++++DI+T F  D 
Sbjct: 540 LGMAVECHSNDRLCVFATDGRAFTLRVADLPRGRGDGQPLRLLIDLSNDEDIITMFPLDD 599

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
             + L+ SS G   IV ES + A  R G+  L +   E   + V   GDHV V+G+NR++
Sbjct: 600 ARRRLLASSTGRGMIVAESAMTAEKRTGRQVLNLKDRESALICVPAEGDHVLVLGQNRRM 659

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L+F +DQ+PEM+RG GV LQ YKDGG+ D + F    G+ W D A     R+  DL  ++
Sbjct: 660 LVFPLDQLPEMARGLGVILQKYKDGGLKDAVVFTADAGVAWPDPA---RVRAFADLKDYV 716

Query: 731 GKRGGVGSLVP 741
           GKR  +G   P
Sbjct: 717 GKRAEMGKPAP 727


>gi|19705415|ref|NP_602910.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296328807|ref|ZP_06871321.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|19713408|gb|AAL94209.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296154142|gb|EFG94946.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 811

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/750 (32%), Positives = 395/750 (52%), Gaps = 14/750 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKK
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA+IDN +I I +L+ YI GPDFPTG II   R  I+++Y+ GRG  +VR 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIID-GRVGIIDAYKTGRGKIKVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L 
Sbjct: 241 KVDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ R
Sbjct: 301 EVKKGEEPELVLNKLYKYTDLQTTFGVIMLSLV-NNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   +    +++  +L    + ++ +  E+ E+KE +     
Sbjct: 420 LDMKLQRLTGLEREKIDTEFKEIETLIKELREVLEDNNKIYDIMKKELLELKEKYGDKRR 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                     +        +  +       V        ++ +     +SAL+  E D  
Sbjct: 480 TKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALNTIEDDYA 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI--QLLIDLNHNQDIVTAFV-- 607
           +    A T D I++ +  GK Y + A  +              +I+L+  + +    V  
Sbjct: 540 EKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEKVRDTIVIK 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
            +    +++ ++ KG        E       G   +K   ++ +  V  +     + + +
Sbjct: 600 EFSPEKEVVFITKKGLIKKTSLGEFKNINNSGLIAIKTREDDDLIFVGLIEDVNKEEILI 659

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
              +     F  D I    R  +GV+  + ++G                +      Y + 
Sbjct: 660 ATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDAVVSAMLIKNPETDILTITENGYGKR 719

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +        RGG G +  K   ++GK +S
Sbjct: 720 TSLDEYPQYNRGGKGVINLKASEKTGKVVS 749



 Score = 90.6 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 53/149 (35%), Gaps = 5/149 (3%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + DG         + +     + ++ +     +  +    + +    +L ++  G     
Sbjct: 661 THDGYCTRFLTDTIRATGRSTQGVKAITLREGDAVVSAMLIKNPETDILTITENGYGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
              E     R GK  + + + E   K+  V++VT D  +  +  N  ++  SI +I  + 
Sbjct: 721 SLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVTEDEELMCITSNGIVIRTSISEISRIG 780

Query: 683 RG-KGVRLQSYKDGGISDVICFKICEGLT 710
           R  +GVR+    D      I     E   
Sbjct: 781 RATQGVRIMKVADDEKVAAITKIKKEEEL 809



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  L        +V+        +L+ ++S G   
Sbjct: 710 TITENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVTEDEELMCITSNGIVI 769

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
               SEI    R   G   +KV+ +EK+  + K+  +   
Sbjct: 770 RTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEEL 809


>gi|239831888|ref|ZP_04680217.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301]
 gi|239824155|gb|EEQ95723.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301]
          Length = 935

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/855 (30%), Positives = 410/855 (47%), Gaps = 114/855 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PL+ GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +++E IL  +D+D VDF+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKLSESILSDIDKDTVDFQDNYDGREQEPVVMPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMEIIPGPDFPTGGIIL-GRSGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVVMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIEGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLNLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + ++  R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVVFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTTAREQLM 426

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAADVAPLIRLIDDPRHTINEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +    +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMTIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  K+ D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KI 705
           +  +     R   GVR  +  DG     +                               
Sbjct: 719 VTDVRVFAGRNSIGVRGINLADGDKVISMAILHHVDADAAERSAYLKRSIAERRAQGADD 778

Query: 706 CEGL--------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            + +                          T +  +   Y +  +     +  RGG G  
Sbjct: 779 ADDIVVVGEEVGNETELNEERYQELKAREQTVLTVSEYGYGKRSSSYEFRVSGRGGKGIR 838

Query: 740 VPKG--FPRSGKFLS 752
                     GK ++
Sbjct: 839 ATDTSKTDEIGKLVA 853



 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V   D + +V
Sbjct: 807 EQTVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDTSKTDEIGKLVALFPVESSDQILLV 866

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            +  +L+   +D I    R  KGV + +  DG     +
Sbjct: 867 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSV 904


>gi|71892249|ref|YP_277983.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|71796355|gb|AAZ41106.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 843

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/788 (32%), Positives = 395/788 (50%), Gaps = 48/788 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +  +++   L   YL YA+S I  RA+PD+RDG KPVHRRI+ AM  +G  +  
Sbjct: 2   NDFAKEITQINIEEELTHSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF+ RY L+ GQGNFG++DGD AAA R
Sbjct: 62  NYKKSARVVGDVIGKYHPHGDTAVYETIVRMAQPFLMRYALVDGQGNFGSVDGDPAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  +L  +D++ VD+   Y+  +S P + P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMSKIANELLLDLDKETVDYELNYDGTESIPGILPARIPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LA IDN +I+IE+L++YI GPDFPT  II +S   + E+Y  GRG  
Sbjct: 182 IPPHNLSEVINGCLAFIDNEDITIEELMKYIPGPDFPTAAIINDS-GGLKEAYSTGRGKI 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  +E +V  G   IV+ EIPYQV K+RL+EKIAEL   KRI  + ++RDES +D 
Sbjct: 241 YIRARSEIETDVKSGRESIVIYEIPYQVNKARLLEKIAELAKLKRIEGIYNLRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++ +++ L+ ++T F +NM  L     P++M L  IL  ++ HRR
Sbjct: 301 MRIVVEIKRDAISEVILNNLYSLTSLQTSFGINMVAL-HQGQPKIMSLKDILSAFVCHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------- 415
            V+ RR +F ++    R+ IL+GL IA  NID +I +IR  +                  
Sbjct: 360 AVVIRRVTFELKKARSRIHILEGLAIALFNIDSVIKLIRQSNSSVEASSVLISSSWNIGN 419

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                  V  +++ LT+NQ  AIL+L+L  L  LE  ++  E  
Sbjct: 420 VFDMKQRTSINLMKSEGSEVKNAVHNNQYCLTKNQAQAILDLKLHKLTTLEYEKLLQEYS 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           +LL + + + S+L   K     I  E+  ++E ++ S                       
Sbjct: 480 SLLEKIKNLISILKDPKCLMRVIRQELLMIQEEYNDSRRTEISSNIENINVENLINQKDV 539

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            +       V         + K       A   KE D +   L A+T D +LL S  G+ 
Sbjct: 540 VVTLSYQGYVKYQPLTDYEAQKRGGKGKLATRIKEEDFITRLLIANTHDTVLLFSNYGRI 599

Query: 573 YTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y +    L   S    G+ I  L+ L+ N+ I        Y +  ++ + +S G      
Sbjct: 600 YWMKVYRLPAASRGSRGKPIINLLPLDVNERITAILPIQNYTTGHQVFMATSSGVVKKTP 659

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK- 685
            +E       G   L ++  +++       G + V +     K++ F   Q+  + R   
Sbjct: 660 LTEFSRPRNVGIIALNLNDGDELIGADVTDGSNEVMLFTAYGKVVRFKETQVRSVGRSAI 719

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GV+      G    V      +  + +      + +  N     +  R   G +  K   
Sbjct: 720 GVKGIHLLQGDRV-VSLIIPKDKSSILTVTRNGFGKRTNQSEYPIKSRATQGVISIKVTE 778

Query: 746 RSGKFLSS 753
           R+G  + +
Sbjct: 779 RNGNVIGA 786


>gi|317177520|dbj|BAJ55309.1| DNA gyrase subunit A [Helicobacter pylori F16]
          Length = 828

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/764 (33%), Positives = 404/764 (52%), Gaps = 25/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNLINETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEVVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK-----EPITVVISNRGWIRSLKSHS 537
           KE FS      +RRT   EV          A             V   +           
Sbjct: 478 KEQFS-----SQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               + +  E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI 
Sbjct: 533 KGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLIS 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMK 651
           L  ++ I+       +     L   +  G       SE  +N    G   + +   +++ 
Sbjct: 593 LAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELV 652

Query: 652 LVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
               V  +  H+ +       + F ++ + E+ R  +GV      +            +G
Sbjct: 653 SAKIVDKNAKHLLIASYLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISDDG 712

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  +     +           RGG G +  K   ++G  +S
Sbjct: 713 NKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 7/135 (5%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G     P  ++         +  +    ++  +    + D   KLL VS  G        
Sbjct: 671 GIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISDDGNKLLSVSENGLGKQTLAE 730

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SR 683
                +R GK  + +   +K   +  ++ V  +   + ++  + K++  SI  I E   R
Sbjct: 731 AYREQSRGGKGIIGMKLTQKTGNLVSIISVDDENLDLMILTASAKMIRVSIKDIKETIGR 790

Query: 684 -GKGVRLQSYKDGGI 697
              GV+L    D  +
Sbjct: 791 NTSGVKLIDTADKVV 805


>gi|220923263|ref|YP_002498565.1| DNA topoisomerase IV subunit A [Methylobacterium nodulans ORS 2060]
 gi|219947870|gb|ACL58262.1| DNA topoisomerase IV, A subunit [Methylobacterium nodulans ORS
           2060]
          Length = 748

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/742 (55%), Positives = 538/742 (72%), Gaps = 1/742 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                   +++V L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD 
Sbjct: 6   EPPSDHGGIESVELKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDP 65

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             AFKK A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AA
Sbjct: 66  NTAFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAA 125

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           YRYTEAR+T+VA L+L G+DEDAVDFR +YN E  EPVV P  FPNLLANG+ GIAVGMA
Sbjct: 126 YRYTEARLTEVARLLLDGIDEDAVDFRPSYNGEKDEPVVLPGAFPNLLANGSQGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HN  E+C+AAL LI +P  + E+L  ++ GPDFPTGGI+V+S E+I E+YR GRG
Sbjct: 186 TSIPPHNAAELCDAALYLITHPTATSEQLTSFVKGPDFPTGGIVVDSAEAIAEAYRTGRG 245

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            FRVRARW  E++GRG+W +VVTEIPY V K+RLIEK+AEL+  +++PLL D+RDESAED
Sbjct: 246 AFRVRARWTREDLGRGAWNVVVTEIPYGVPKARLIEKMAELLTERKLPLLADVRDESAED 305

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           VRIVL P++R++DP +LMES+F L+++E+RF LNMNVL  G+VP+V+ L   L+EWL HR
Sbjct: 306 VRIVLEPRSRTVDPVVLMESLFRLTELESRFSLNMNVLVSGQVPRVVGLAEALREWLDHR 365

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R VL RRS  R+  I++R+EIL GLLI YL++D++I IIR ED+PK  ++  F LTE Q 
Sbjct: 366 RTVLQRRSRHRLAQIEKRLEILGGLLIVYLDLDQVIRIIREEDEPKAELMRYFQLTEVQA 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL+ RLRSLRKLEE ++K E   L AEK  +D+LL S   QW  IA ++R VK+ F  
Sbjct: 426 NAILDTRLRSLRKLEEMELKREQAALTAEKADLDALLGSEALQWKSIAAQVRAVKKTFGP 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
            T LGRRRTT           L +AMIE+EPITV++S +GWIRSLK H  DLS + FK  
Sbjct: 486 ETPLGRRRTTLENPPDTSDLDLAEAMIEREPITVIVSQKGWIRSLKGHVADLSGVQFKGD 545

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+LK++    TT ++L+L+++GK +TL A  L  GRG G+ I+L+ DL+   DIVT + Y
Sbjct: 546 DALKLSFPTETTAKLLVLASNGKVFTLDAAKLPGGRGFGDPIRLMADLDEGTDIVTVWPY 605

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGEN 667
            +  KLL  +  G  F      ++ANTRKGK  + +     +   V+V  GDHVA  GEN
Sbjct: 606 RAGAKLLFGTIDGRGFTTGSDGLVANTRKGKQVVALDGAAVVTHCVEVGEGDHVAACGEN 665

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           R L++F + +IPEM+RGKGVRLQ Y++  ++ +  FK+ EGLTW DSAGR+ +    +L 
Sbjct: 666 RLLVVFPLTEIPEMARGKGVRLQRYRESTLAYLTVFKLAEGLTWPDSAGRTRSVVGEELA 725

Query: 728 GWLGKRGGVGSLVPKGFPRSGK 749
            W+G RG VG + P+GFPRS +
Sbjct: 726 KWVGHRGTVGIMAPRGFPRSNR 747


>gi|15835809|ref|NP_300333.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
 gi|16752764|ref|NP_445032.1| DNA gyrase subunit A [Chlamydophila pneumoniae AR39]
 gi|33241616|ref|NP_876557.1| DNA gyrase subunit A [Chlamydophila pneumoniae TW-183]
 gi|12644500|sp|Q9Z8R4|GYRA_CHLPN RecName: Full=DNA gyrase subunit A
 gi|7189403|gb|AAF38315.1| DNA gyrase, subunit A [Chlamydophila pneumoniae AR39]
 gi|8978648|dbj|BAA98484.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
 gi|28415638|dbj|BAC57415.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae]
 gi|33236125|gb|AAP98214.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
          Length = 834

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/762 (31%), Positives = 387/762 (50%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +   +L   ++E YL Y++S I  RA+PD+RDG KP  RR+++AM ++ L  GA  +
Sbjct: 5   DEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD  AA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L L+ NP+ S++++L+ + GPDFPTGG I+   E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLLLANPQASVDEILQVMPGPDFPTGG-IICGSEGIRSTYTTGRGKIKVR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IA L+  K +  + D+RDES +D   V
Sbjct: 244 ARLHVEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR+EV+
Sbjct: 304 VLEIKKGESSEIIINRLYKFTDVQVTFGANMLALDK-NLPRTMSIHRMISAWIRHRKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ + +   + R  +L+G L A   +D ++  IR        K  ++  F  TE Q  
Sbjct: 363 RRRTRYELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIESFGFTEPQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +I+ E + LL +      +L+      + I  E++++ +    +
Sbjct: 423 AILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDEGLVKDIIRNELQDLLKHHKVA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRTT      AD     + +I  E + + IS   +++ +                
Sbjct: 483 -----RRTTIE--FDADDIRDIEDIITNESVIITISGDDYVKRMPVKVFKEQRRGGHGVT 535

Query: 550 SLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--- 597
              +            A T D +L+ +  G+ Y L    L  G    +   ++  L    
Sbjct: 536 GFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             +++        +D+   L + + +G    V         +KG   L++   +++    
Sbjct: 596 PGEELAAILNIKNFDNAGFLFLATKRGVVKKVSLDAFSNPRKKGIRALEIDEGDELIAAC 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  +++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIVSDEEKVMLFTHLGMAVRFPHEKVRPMGRTARGVRGVSLKNEEDKVVSCQIVTENQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    + + +           RGGVG        R+G  L +
Sbjct: 716 LIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERNGNVLGA 757



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 55/171 (32%), Gaps = 7/171 (4%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                   ++++L +  G A   P   +         ++ +   N    +V+  +     
Sbjct: 654 ACHIVSDEEKVMLFTHLGMAVRFPHEKVRPMGRTARGVRGVSLKNEEDKVVSCQIVTENQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +L+V  +G        +     R G       +   +   +  +     D + ++    
Sbjct: 714 SVLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERNGNVLGAIPVTDHDSILLMSSQG 773

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEG-LTWIDSAG 716
           + +  ++  +  M R  +GVRL   K+G  +  +      E     +  + 
Sbjct: 774 QAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDDEVLSGSE 824


>gi|326383915|ref|ZP_08205599.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395]
 gi|326197374|gb|EGD54564.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395]
          Length = 832

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/777 (29%), Positives = 388/777 (49%), Gaps = 41/777 (5%)

Query: 6   ISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +S+   L E    + ++ V L   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++A 
Sbjct: 1   MSDETDLPENNGGDRIEPVDLGQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYAS 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G      + KSAR V E +G  HPHGD S+YD+LVRLAQP+  RYPLI GQGNFG+ 
Sbjct: 61  FDAGFRPERGYVKSARPVSETMGNYHPHGDSSIYDALVRLAQPWSMRYPLIDGQGNFGSR 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D AAA RYTEAR+T +A  +L+ + E+ VDF   Y+ +  EP V PS+ PNLL NG+ 
Sbjct: 121 GNDGAAAMRYTEARLTPLAMEMLRDITEETVDFVPNYDGKTQEPTVLPSRIPNLLINGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN+ E+ +A    ++NP    E ++   +E + GPDFPT   ++   +
Sbjct: 181 GIAVGMATNIPPHNLNEVADAVFWALENPEADEETTLAACMEVVKGPDFPTAA-LIVGSQ 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y  GRG  R+R+   +EEV  G+  ++VTE+PYQV    LI  IAE +   ++  
Sbjct: 240 GIRDAYMTGRGSIRMRSVVDIEEVK-GTTQLIVTELPYQVNPDNLISSIAEQVNDGKLKG 298

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           +  I D+ S      ++    R     +++ +++  S ++T F  NM  +    VP+ + 
Sbjct: 299 ISKIEDQSSDRAGLRIVITLRRDGVARVVLNNLYKHSQLQTNFGANMLSIVD-GVPRTLR 357

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           LD +++ ++AH+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     +  
Sbjct: 358 LDQMIRYYVAHQIDVIIRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEAA 417

Query: 417 MVSRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                    + E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q  
Sbjct: 418 RTGLMDLLDIDEIQADAILAMQLRRLSALERQKIIDELAEIEREIADLKDILERPERQRA 477

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
            +  E++EV + +        RRT       A+     + +I +E + V I+  G+ +  
Sbjct: 478 IVRDELKEVVDKYGD-----DRRTRII---PAEGDVTDEDLIAREDVVVTITETGYAKRT 529

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
                   K     +     K+ D +     + T D +L  +T G+ Y   A  L   + 
Sbjct: 530 KTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVSSTHDWLLFFTTKGRVYRAKAYELPEANR 589

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+     + I        Y+    L++ +  G     +     +N   G  
Sbjct: 590 TARGQHVANLLAFQPEERIAQVIRISGYEDAPYLVLATRNGLVKKSKLDAFDSNRSGGIA 649

Query: 641 FLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG 696
            + +  ++++      +  D + +V +  + + F+ D   +  M R   GV+   + D  
Sbjct: 650 AINLRGDDELVGARLCSADDDLLLVSKKGQSIRFTADDETLRPMGRQTSGVQGMRFNDDD 709

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +     +    + ++G  Y +  +        RGG G L  +  P+ G  + +
Sbjct: 710 ELLSLTVVRPDTFLLVATSG-GYAKRTDIEEYSAQGRGGKGVLTIQHDPKRGDLVGA 765



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 76/205 (37%), Gaps = 12/205 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ +  G ++  K  + D +        + +  D L  A      D +LL+S 
Sbjct: 617 YEDAPYLVLATRNGLVKKSKLDAFDSNRSGGIAAINLRGDDELVGARLCSADDDLLLVSK 676

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            G++    A +      G   +    +  N + ++++  V      LLV +S G A   +
Sbjct: 677 KGQSIRFTADDETLRPMGRQTSGVQGMRFNDDDELLSLTVVRPDTFLLVATSGGYAKRTD 736

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR 683
             E  A  R GK  L +  + K   +   + V     +  +     ++     Q+ +  R
Sbjct: 737 IEEYSAQGRGGKGVLTIQHDPKRGDLVGALVVDIDSEIYAITSGGGVIRTKAKQVRKAGR 796

Query: 684 -GKGVRLQSYKDGGISDVICFKICE 707
             KGVRL +  DG     I     E
Sbjct: 797 QTKGVRLMNLSDGDNLIAIARNADE 821


>gi|254302373|ref|ZP_04969731.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322565|gb|EDK87815.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 811

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/758 (33%), Positives = 410/758 (54%), Gaps = 30/758 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKK
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA+IDN +I I +L+ YI GPDFPTG II   R  I+E+Y+ GRG  +VR 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIID-GRAGIIEAYKTGRGKIKVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L 
Sbjct: 241 KVDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ R
Sbjct: 301 EVKKGEEPELVLNKLYKYTDLQTTFGVIMLSLV-NNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +I
Sbjct: 360 RTVFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   + A  +++  +L    + +  +  E+ E+KE ++    
Sbjct: 420 LDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYND--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
             +RRTT  E        L + +I+ E I +  +N+G+++          +     +SAL
Sbjct: 477 --KRRTTIEE---ERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSAL 531

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI--QLLIDLNHNQD 601
           +  E D  +  + A T D I++ +  GK Y + A  +              +I+L+  + 
Sbjct: 532 NTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEK 591

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +    V   + S  +++ ++  G        E       G   +K   ++ +  V  +  
Sbjct: 592 VRDTIVIKEFSSEKEVVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIED 651

Query: 659 ---DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
              + + +   +     F  D I    R  +GV+  + ++G                +  
Sbjct: 652 VNKEEILIATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDAVVSAMLIKNPETDILTI 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +  +        RGG G +  K   ++GK +S
Sbjct: 712 TENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVS 749



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 5/149 (3%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + DG         + +     + ++ +     +  +    + +    +L ++  G     
Sbjct: 661 THDGYCTRFLTDTIRATGRSTQGVKAITLREGDAVVSAMLIKNPETDILTITENGYGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
              E     R GK  + + + E   K+  V++V  D  +  +  N  ++  SI +I  + 
Sbjct: 721 SLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVNEDEELMCITSNGIVIRTSISEISRIG 780

Query: 683 RG-KGVRLQSYKDGGISDVICFKICEGLT 710
           R  +GVR+    D      I     E   
Sbjct: 781 RATQGVRIMKVADDEKVAAITKIKKEEEL 809



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  L        +V+    +   +L+ ++S G   
Sbjct: 710 TITENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVNEDEELMCITSNGIVI 769

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
               SEI    R   G   +KV+ +EK+  + K+  +   
Sbjct: 770 RTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEEL 809


>gi|315499941|ref|YP_004088744.1| DNA topoisomerase iv, a subunit [Asticcacaulis excentricus CB 48]
 gi|315417953|gb|ADU14593.1| DNA topoisomerase IV, A subunit [Asticcacaulis excentricus CB 48]
          Length = 738

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/746 (50%), Positives = 519/746 (69%), Gaps = 12/746 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D I +        + +  +  AL  RYLAYALSTI  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MSKDVIPDEG----GRILSEPMGEALSRRYLAYALSTIMHRALPDVRDGLKPVHRRVLYA 56

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  M L+  AA +KSA++VGEV+G  HPHGDQS+YD+LVR+AQ F QRYP++ GQGNFGN
Sbjct: 57  MHNMRLNPQAAARKSAKVVGEVMGNFHPHGDQSIYDALVRMAQWFAQRYPMVDGQGNFGN 116

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAA RYTE +MT  A L+L G+DE+AVDFR TY+ +D EPVV P+ FPNLLANG 
Sbjct: 117 IDGDSAAAMRYTECKMTTAAMLLLDGIDENAVDFRPTYDGQDEEPVVLPAAFPNLLANGA 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMATSIP HNV E+ +A   LI  P      L+  I GPDFPTGGI VE RE+I 
Sbjct: 177 TGIAVGMATSIPPHNVAELIDACKLLIAEPNTDTNGLMAIIPGPDFPTGGICVERREAIY 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y  GRG  RVRAR+ VE++GRG+W I+V+EIPYQVQKSRLIE++A+LI AK+ PLL D
Sbjct: 237 EAYETGRGSVRVRARYEVEDLGRGAWRILVSEIPYQVQKSRLIEQLADLIEAKKAPLLGD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES E+VR++L PK R++DP++LMES+F +SD+ETRF  NMNVL     P+VM L  I
Sbjct: 297 VRDESDEEVRLILEPKTRNIDPEVLMESLFKISDLETRFAFNMNVLDKTGTPRVMGLKTI 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L  +L HRREVL R+S +R+  I++R+ +L GL+IA+LN+DE+I IIR ++ PK  +++R
Sbjct: 357 LTSFLDHRREVLIRQSQWRLDKIEKRLHVLDGLMIAFLNLDEVIRIIREDETPKQTLMAR 416

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F LTE QVD IL+ RLR L +LEE  IK E D L  E++ + SLL S K+QW +I  ++ 
Sbjct: 417 FELTEVQVDYILDTRLRQLARLEEMAIKGEHDKLSKERDGLLSLLGSEKKQWKRIDEQLT 476

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EV++       L  RRTTF E  +  +    ++ + KE +TV++S RGWIR+ K    D 
Sbjct: 477 EVRKQL-----LSARRTTFAEAPQGVEVAAIESYLPKEALTVILSERGWIRATKGRVDDP 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S L FKEGD+L   +  + TD++L++++DG+ +TL    L SGRGHGE +QL++++  N 
Sbjct: 532 SELKFKEGDNLGFLVPGYNTDKLLIMTSDGRFFTLGCDKLPSGRGHGEPLQLMLEMEENT 591

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            IV  F++    K L+VS  G  F++ E + + N + GK+ L  +   +  + + VTGDH
Sbjct: 592 RIVNVFMFTPGAKRLMVSKNGYGFVMNEEDAVGNKKAGKSVLN-ADGTEAFVALPVTGDH 650

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           V ++GEN K+L++ + ++PEM+RGKGV+LQ YKDGG+ D+  F     + W D +G++  
Sbjct: 651 VVILGENNKVLVYPVSELPEMARGKGVKLQGYKDGGVKDIAIFDQAGPVQWFDGSGKA-- 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
           R   D   ++GKR  VG + P+G  +
Sbjct: 709 RDFKDWKDFVGKRASVGKMAPRGLRK 734


>gi|15618194|ref|NP_224479.1| DNA gyrase subunit A [Chlamydophila pneumoniae CWL029]
 gi|4376547|gb|AAD18423.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae CWL029]
          Length = 834

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/762 (31%), Positives = 387/762 (50%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +   +L   ++E YL Y++S I  RA+PD+RDG KP  RR+++AM ++ L  GA  +
Sbjct: 5   DEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD  AA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L L+ NP+ S++++L+ + GPDFPTGG I+   E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLLLANPQASVDEILQVMPGPDFPTGG-IICGSEGIRSAYTTGRGKIKVR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IA L+  K +  + D+RDES +D   V
Sbjct: 244 ARLHVEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR+EV+
Sbjct: 304 VLEIKKGESSEIIINRLYKFTDVQVTFGANMLALDK-NLPRTMSIHRMISAWIRHRKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ + +   + R  +L+G L A   +D ++  IR        K  ++  F  TE Q  
Sbjct: 363 RRRTRYELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIESFGFTEPQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +I+ E + LL +      +L+      + I  E++++ +    +
Sbjct: 423 AILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDEGLVKDIIRNELQDLLKHHKVA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRTT      AD     + +I  E + + IS   +++ +                
Sbjct: 483 -----RRTTIE--FDADDIRDIEDIITNESVIITISGDDYVKRMPVKVFKEQRRGGHGVT 535

Query: 550 SLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--- 597
              +            A T D +L+ +  G+ Y L    L  G    +   ++  L    
Sbjct: 536 GFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             +++        +D+   L + + +G    V         +KG   L++   +++    
Sbjct: 596 PGEELAAILNIKNFDNAGFLFLATKRGVVKKVSLDAFSNPRKKGIRALEIDEGDELIAAC 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  +++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIVSDEEKVMLFTHLGMAVRFPHEKVRPMGRTARGVRGVSLKNEEDKVVSCQIVTENQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    + + +           RGGVG        R+G  L +
Sbjct: 716 LIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERNGNVLGA 757



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 55/171 (32%), Gaps = 7/171 (4%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                   ++++L +  G A   P   +         ++ +   N    +V+  +     
Sbjct: 654 ACHIVSDEEKVMLFTHLGMAVRFPHEKVRPMGRTARGVRGVSLKNEEDKVVSCQIVTENQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +L+V  +G        +     R G       +   +   +  +     D + ++    
Sbjct: 714 SVLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERNGNVLGAIPVTDHDSILLMSSQG 773

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEG-LTWIDSAG 716
           + +  ++  +  M R  +GVRL   K+G  +  +      E     +  + 
Sbjct: 774 QAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDDEVLSGSE 824


>gi|254420694|ref|ZP_05034418.1| DNA topoisomerase IV, A subunit [Brevundimonas sp. BAL3]
 gi|196186871|gb|EDX81847.1| DNA topoisomerase IV, A subunit [Brevundimonas sp. BAL3]
          Length = 737

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/738 (50%), Positives = 506/738 (68%), Gaps = 7/738 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +       +    +  AL  RYLAYALSTI  RA+PD+RDGFKPVHRRI++AM +M L+ 
Sbjct: 5   APPPEGGRIIDEPMETALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRLNP 64

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            AA +K A++VGEV+G  HPHGD S+Y++LVRLAQ F QRYPL+ GQGNFGNIDGDSAAA
Sbjct: 65  QAAARKCAKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDGDSAAA 124

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE ++T  A L+L G+D+D+VDFR TY+++D EPVV P+ FPNLLANG+SGIAVGMA
Sbjct: 125 MRYTECKLTPAAVLLLDGIDQDSVDFRATYDDQDEEPVVLPAGFPNLLANGSSGIAVGMA 184

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HNV E+ +A   L+D PE +  +L++ + GPDFPTGG+ VE   SI+++Y  GRG
Sbjct: 185 TSIPPHNVGELIDACQMLLDRPEATTAELVQLVPGPDFPTGGVAVEGHASILDAYETGRG 244

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           G R+RARW  E++GRG W I+VTE+PYQVQKSRLIE +A+LI  K+ PLL D+RDESAED
Sbjct: 245 GVRLRARWETEDLGRGVWRIIVTEMPYQVQKSRLIEALADLIEHKKAPLLGDVRDESAED 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R++L PKNR+++P++LMES+F LSD+E RFP+NMNVL     P+VM L   L+ +L HR
Sbjct: 305 IRLILEPKNRTIEPEMLMESLFKLSDLEVRFPINMNVLDADGTPRVMGLKACLRAFLDHR 364

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           REVL RRS +R+  +++R+ +L+GL I +LNIDE+I I+R E++PK V+++RF LTE Q 
Sbjct: 365 REVLNRRSQWRIARVEKRLHLLEGLRIVFLNIDEVIRIVREEEQPKAVLIARFGLTEVQA 424

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           D IL+ RLR L +LEE  I+ E   L  E   + +L +S  +QW  I+ E+  V++    
Sbjct: 425 DFILDTRLRQLARLEEMTIEKEFKALSEELAHLQALTSSEGKQWKAISKELEAVRKALIS 484

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RRTT  +          +A I +E ITV++S RGWIR+ K    D S L FKEG
Sbjct: 485 P-----RRTTIADAVDTSAFVAPEAFIPREAITVILSERGWIRAAKGKVEDPSELKFKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L   + A+TTD++L+ ++DG+ +T+ A  L SGRGHGE ++L+IDL+   +I+    +
Sbjct: 540 DQLAYLVPAYTTDKLLVGASDGRIFTIGADKLASGRGHGEPLRLMIDLDEKAEIINVLAH 599

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
               KLL+ S  G  FI  E + +A  R GK  L       +++    T DHVA +GEN 
Sbjct: 600 QPGGKLLIASKAGYGFIAPEDDTLAQKRGGKQVLNGDMLAMLRIPQTPTADHVATIGENI 659

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           K LIF +D++PEM RGKGVRLQ++K GG++DV  F   +G  W D  GR   R+  D   
Sbjct: 660 KTLIFPLDELPEMGRGKGVRLQNFKQGGLADVTVFNAEQGPEWADGGGR--RRNWPDWKD 717

Query: 729 WLGKRGGVGSLVPKGFPR 746
           WLGKR G G   P+G  +
Sbjct: 718 WLGKRAGAGRQGPRGLRK 735


>gi|83593079|ref|YP_426831.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170]
 gi|83575993|gb|ABC22544.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170]
          Length = 943

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/844 (30%), Positives = 412/844 (48%), Gaps = 107/844 (12%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +N+   ++ ++  VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M E G 
Sbjct: 3   TNTPKPIDLDISPVSIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMKESGY 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           +F   ++KSARIVG+V+GK HPHGDQS+YD++VR+ Q F  R PLI GQGNFG++DGD A
Sbjct: 63  EFNKPYRKSARIVGDVMGKYHPHGDQSIYDAMVRMVQNFAMRLPLIDGQGNFGSMDGDRA 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEARM + A  +L  +D++ VDF+  Y+E   EP+V P++FPNLL NG  GIAVG
Sbjct: 123 AAMRYTEARMAKAAHSLLDDIDKETVDFQPNYDETTREPIVLPARFPNLLVNGAGGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +A  A+IDNP ++ E+LLE + GPDFPTGG I+  R  +  ++  G
Sbjct: 183 MATNIPPHNLGEVIDACCAMIDNPAVTAEELLELVPGPDFPTGGTIL-GRSGVRAAHLTG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +R R   E++  G   I+VTE+PYQV K+ ++EKIAEL+  K++  + DIRDES 
Sbjct: 242 RGSVIMRGRTHFEDISGGRQAIIVTEVPYQVNKASMVEKIAELVREKKLEGISDIRDESD 301

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                V+    R    ++++  +F  + ++T F +NM  L+ G  P+++ L  I++ ++ 
Sbjct: 302 RRGVRVVIEVKRDAMAEVVLNQLFRYTPLQTSFGVNMLALN-GGKPELLALRPIIEAFIT 360

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------- 417
            R EV+ RR+ F +     R   L GL IA  N+D +I +IR    P+            
Sbjct: 361 FREEVIRRRTIFELGKARERAHTLVGLAIAVANLDPVIKLIREAPDPQAAREGLMARDWP 420

Query: 418 -------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q  AIL+LRL  L  LE  ++  EL  +  + 
Sbjct: 421 AMDVEPLIKLIDEPGRMVIDGVYRLSEIQARAILDLRLHRLTGLERDKLHGELIEIGQQI 480

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           E+   +L S  + +  +  E+ E+KE ++       RRTT  E          + +I++E
Sbjct: 481 EEYLHILRSRARLFEIMRAELVEMKEAYATP-----RRTTLEENEFEHD---IEDLIQRE 532

Query: 519 PITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V ++N G+I+ +   +           + +  ++ D +      +T   +L  S+DG
Sbjct: 533 EMVVTVTNTGYIKRVPLTTYRAQRRGGRGRAGMSMRDEDFVTTIFVVNTHAPLLFFSSDG 592

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGN 622
             Y +    L   + +  G+A+  ++ LN  + I T               ++  +  GN
Sbjct: 593 MVYKMKVYRLPLGTPQARGKAMVNIMPLNEGERITTVMPLPEDEGAWDQLDVMFATETGN 652

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEM 681
                 S+       GK  +K+   + +  V   T +   ++  N  K + F++  +   
Sbjct: 653 VRRNRLSDFTNVMSNGKIAMKLDEGDHLIGVATCTDEQDVLLTTNLGKAIRFAVGDVRVF 712

Query: 682 -SRG-KGVRLQSYKDGGIS----------------------------------------- 698
             R   GVR     +                                             
Sbjct: 713 AGRTSTGVRGIRLAEDDRVNRLSILGHVEASAETRAAYLKQASALRRASGETEGEDDSTL 772

Query: 699 ----DVICFKICEGL-----TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                V+  +  E L       +    R + +  +     +  RGG G    +   R+G 
Sbjct: 773 DAEPGVLSAEEFEDLRQREEFLLTVTSRGFGKRTSAYEYRVTGRGGQGIANIEMSERNGT 832

Query: 750 FLSS 753
            +++
Sbjct: 833 VVAA 836



 Score = 71.0 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGE 666
              LL V+S+G        E     R G+    +   E+   +     +   D V ++ +
Sbjct: 791 EEFLLTVTSRGFGKRTSAYEYRVTGRGGQGIANIEMSERNGTVVAAFPIANEDQVMMITD 850

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             +L+   ++ +    R  +GV L    D G   V   ++ E
Sbjct: 851 GGQLIRMPVNDVRIAGRKTQGVTLFRLSDDGEHVVSVARLPE 892


>gi|317178941|dbj|BAJ56729.1| DNA gyrase subunit A [Helicobacter pylori F30]
          Length = 828

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 402/764 (52%), Gaps = 25/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNLINETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VR +  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRTKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+  I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRFIKTSQSPEVAKNALIERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK-----EPITVVISNRGWIRSLKSHS 537
           KE FS      +RRT   EV          A             V   +           
Sbjct: 478 KEQFS-----SQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               + +  E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI 
Sbjct: 533 KGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLIS 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMK 651
           L  ++ I+       +     L   +  G       SE  +N    G   + +   +++ 
Sbjct: 593 LAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELV 652

Query: 652 LVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
               V  +  H+ +       + F ++ + E+ R  +GVR     +            + 
Sbjct: 653 SAKIVDKNAKHLLIASYLGIFIKFPLEDVREIGRSARGVRGIKLNENDFVVGAVVINDDS 712

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  +     +           RGG G +  K   ++G  +S
Sbjct: 713 NKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756



 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G     P  ++         ++ +    ++  +    + D + KLL VS  G        
Sbjct: 671 GIFIKFPLEDVREIGRSARGVRGIKLNENDFVVGAVVINDDSNKLLSVSENGLGKQTLAE 730

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SR 683
                +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI  I E   R
Sbjct: 731 AYREQSRGGKGIIGMKLTQKTGNLVSVISVDDENLDLMILTASAKMIRISIKDIKETIGR 790

Query: 684 -GKGVRLQSYKDGGI 697
              GV+L    D  +
Sbjct: 791 NTSGVKLIDTADKVV 805


>gi|1226022|emb|CAA58885.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 854

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/777 (28%), Positives = 390/777 (50%), Gaps = 41/777 (5%)

Query: 6   ISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    E    + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM
Sbjct: 1   MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            +       +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+ 
Sbjct: 61  YDSA-SSDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ 
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSR 179

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+ P HN+ E+ EA    ++N     E + E ++E + GPDFPT G ++   +
Sbjct: 180 GIAVGMATNNPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSG-LIVGTQ 238

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y+ GRG  ++R    +EE  RG   IV+TE+PYQV     I  IAE +   ++  
Sbjct: 239 GIEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAG 298

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + 
Sbjct: 299 ISNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLR 357

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--- 413
           LD +++ ++ H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR        
Sbjct: 358 LDQLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIA 417

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++    + + Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q  
Sbjct: 418 RAGLIELLDIDDIQAQAILDMQLRRLAALERQKIVDDLAKIEAEIADLEDILAKPERQRG 477

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
            +  E++E+ +    +     RRT       AD     + +I +E + V I+  G+ +  
Sbjct: 478 IVRDELKEIVDKHGDA-----RRTRIV---PADGQVSDEDLIAREDVVVTITETGYAKRT 529

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--G 583
                   K     +     K+ D +       T D IL  +T G+ Y   A  L     
Sbjct: 530 KTDLYHSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEASR 589

Query: 584 RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+     + I        Y+    L++ +  G     + S+  +N   G  
Sbjct: 590 TARGQHVANLLAFQPEERIAQVIQIKSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIV 649

Query: 641 FLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGG 696
            + +   +++   V  +  D + +V  NR+ + FS     +  M R   GV+   + +  
Sbjct: 650 AINLREGDELVGAVLCSAEDDLLLVSANRQSIRFSATDEALRPMGRATSGVQGMRFNEDD 709

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +     +    + +    Y +  +     +  RGG G L  +   + G  + +
Sbjct: 710 RLLSLNVVRPD-TYLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYDRKRGSLVGA 765



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 12/200 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ +  G ++  K    D +        + +EGD L  A+     D +LL+S 
Sbjct: 617 YEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSA 676

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           + ++    A +      G   +    +  N +  +++  V      LLV +S G A    
Sbjct: 677 NRQSIRFSATDEALRPMGRATSGVQGMRFNEDDRLLSLNVVRPDTYLLVATSGGYAKRTS 736

Query: 628 ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
             E     R GK  L +        +   + V  D  +  +     ++  +  Q+ +  R
Sbjct: 737 IDEYSVQGRGGKGILTIQYDRKRGSLVGALIVDDDTELYAITSTGGVIRTAARQVRKAGR 796

Query: 684 -GKGVRLQSYKDGGISDVIC 702
             KGVRL +  +G     I 
Sbjct: 797 QTKGVRLMNLAEGDTLIAIA 816


>gi|148255734|ref|YP_001240319.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1]
 gi|146407907|gb|ABQ36413.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1]
          Length = 915

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/853 (31%), Positives = 397/853 (46%), Gaps = 115/853 (13%)

Query: 6   ISNSNTLVE------ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           +S+             +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++
Sbjct: 1   MSDQEDEKPGEPGGPSDIRPVSILDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M E G      + KSAR+VG+VIGK HPHGDQS+YD++VR+AQ F  R PLI GQGNFG
Sbjct: 61  SMYEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD  AAYRYTEA++ + A  +L  +D+D VDF+  Y+  D EP V P+KFPNLL NG
Sbjct: 121 SVDGDPPAAYRYTEAKLAKSAIPLLDDIDKDTVDFQANYDNSDKEPSVLPAKFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +A +ALIDNP ISI++L + I GPDFPTGGII+  R  I
Sbjct: 181 AGGIAVGMATNIPPHNLSEVIDACVALIDNPAISIDELTQIIPGPDFPTGGIIL-GRAGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y LGRG   +R +  ++ + +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + 
Sbjct: 240 RSAYHLGRGSIMMRGKVTIDTIRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  D   V+    R    D+++  ++  + ++T F  NM  L  G  PQ M L  
Sbjct: 300 DLRDESDRDGYRVVIELKRDAVADVVLNQLYKFTPLQTSFAANMLALD-GGRPQTMTLKD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L  ++A R  V+ RR+ F +     R  IL GL +A  NIDEII +IR    P     +
Sbjct: 359 LLTIFVAFRERVVTRRTKFLLNKARDRAHILVGLAVAVANIDEIIRVIRTSPNPTSARDA 418

Query: 420 RF-----------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                           L+  Q  AIL+LRL+ L  L   +I  E
Sbjct: 419 LMSRDWPARDVEAIITLIDDPRHRLAEDGTIRLSFEQAKAILDLRLQRLTALGREEISDE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           LD L  E      +L S  +  + I  E+  VK  F        RRT   E         
Sbjct: 479 LDKLKIEIADYLEILRSRARVQDIIKTELAAVKAEFGTP-----RRTAIIEQEGE---VE 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I++E + V +S+ G+ +          +      S +  +E D +     A T   
Sbjct: 531 DEDLIQREDMVVTVSHAGYTKRVPLSAYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTP 590

Query: 563 ILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KL 614
           +L  S+ G+ Y      L        G+A+  ++ L   + I T               +
Sbjct: 591 VLFFSSRGQVYKEKVWRLPIAAPNSRGKALINILPLEQGERITTIMPLPEDESSWANLDV 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  ++ GN    + S+ +   R G   +K+   E++  V   T  D V +     + + F
Sbjct: 651 MFATTGGNVRRNKLSDFVDVRRSGIIAMKLDDGEEIVNVQICTERDDVLLTAAGGQCIRF 710

Query: 674 SIDQIPE-MSRGK-GVRLQSYKDGGISDVICFK--------------------------- 704
            +  +     R   GVR  +  +G     +                              
Sbjct: 711 PVTDVRVFTGRTSMGVRGIALAEGDKVISLSILRHVETTSDERTAYLKMRRAMSGETTTE 770

Query: 705 ------------------------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                                     +    +  +   Y +  +        RGG G + 
Sbjct: 771 EPVETEGEEAAGAIQLSQERYVEMSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVA 830

Query: 741 PKGFPRSGKFLSS 753
                R+GK ++S
Sbjct: 831 MSVNNRNGKLVAS 843



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 10/114 (8%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSS-EEKMKLVVKVTG-DHVAVVG 665
               +L VS  G        E     R GK    + V++   K+     V   D + +V 
Sbjct: 797 QEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRNGKLVASFPVEDSDQIMLVT 856

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  +L+   +D I    R  +GV + +  D      +     E        G  
Sbjct: 857 DKGQLIRCPVDGIRIAGRSTQGVIVFNTADDEHVVSVEHIGEE-----TENGNG 905


>gi|296273761|ref|YP_003656392.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299]
 gi|296097935|gb|ADG93885.1| DNA gyrase, A subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 856

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/765 (31%), Positives = 405/765 (52%), Gaps = 31/765 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  +++  +++  YL Y++S I  RA+PD +DG KPVHRRI+ AM ++ +  
Sbjct: 2   ENLFENQDIIDINIEDSVKSSYLDYSMSVIIGRALPDAKDGLKPVHRRILFAMHDLNMSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            A +KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PLI GQGNFG++DGDSAAA
Sbjct: 62  RAPYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R T+++E IL+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + ++DNPE + ++L+E+I GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIF-GRRGIIDAYNTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  + E       IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  D
Sbjct: 241 RVRIRAKHHI-ETRGKKEIIVLDELPYQVNKARLIELIANLTKDKQIEGISEVRDESDRD 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    +++M +++  + MET F + + +    + P+V  L  +L  +++HR
Sbjct: 300 GIRVVIELKKDAMSEIVMNNLYKSTPMETTFGI-ILLAVYNKEPKVFTLPELLNVFISHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR        K  +  RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEKLELRFGLSP 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+A   +++S+L S ++    I  E+ E++E 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMAIIAELESILKSEEKLVEIIKEELSEIREK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           +S             ++  +      + +I  EP+ V I++ G+++          +   
Sbjct: 479 YS--------SKRLTDIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKSYEKQRRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               A+   + D ++     +T D ++ ++  G+ Y L    +        G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLYWLKVYRIPEGSRTAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D +  L   +  G       SE       G   + +   +++  
Sbjct: 591 LRPDEKIMEIIPTSDFDESKSLAFFTRNGVVKRTSLSEFSNIRSNGVRAIVLDDADEIVT 650

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEG 708
               T    ++ +     + + F +++  E  R  +GVR   +K D              
Sbjct: 651 AKITTPSTQYLMIFTSLGQCIRFDVEKTREQGRSTRGVRGIKFKHDTDFVVDANVVDNIE 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +  + +   +           R G G +  K   ++G  + +
Sbjct: 711 QELLTVSQKGIGKRTTVEEYRETNRAGSGVISMKLSAKTGNVVGA 755



 Score = 41.3 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 2/102 (1%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L +S  G                G  +  +       ++V A + D    L++++S 
Sbjct: 711 QELLTVSQKGIGKRTTVEEYRETNRAGSGVISMKLSAKTGNVVGAVLVDEAQDLMILTSI 770

Query: 621 GNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           G    V+   I        G   + V +++K+  + K   + 
Sbjct: 771 GKMIRVDMQTIRKAGRNTSGVIIVNVDAKDKVVSIAKCPKED 812


>gi|329890068|ref|ZP_08268411.1| DNA topoisomerase IV, A subunit [Brevundimonas diminuta ATCC 11568]
 gi|328845369|gb|EGF94933.1| DNA topoisomerase IV, A subunit [Brevundimonas diminuta ATCC 11568]
          Length = 737

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/738 (49%), Positives = 507/738 (68%), Gaps = 7/738 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + T     +    +  AL  RYLAYALSTI  RA+PD+RDGFKPVHRRI++AM +M L+ 
Sbjct: 5   TPTPEGGRIVEEPMGDALSRRYLAYALSTITNRALPDVRDGFKPVHRRIMYAMHQMRLNP 64

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            AA +K A++VGEV+G  HPHGD S+Y++LVRLAQ F QRYPL+ GQGNFGNIDGDSAAA
Sbjct: 65  QAAARKCAKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDGDSAAA 124

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE ++T  A L+L G+D+DAVDFR TY+++D EPVV P+ FPNLLANG+SGIAVGMA
Sbjct: 125 MRYTECKLTPAAVLLLDGIDQDAVDFRPTYDDQDEEPVVLPAGFPNLLANGSSGIAVGMA 184

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HNV E+ +A   L++ P+ + E L++ + GPDFPTGG+ VE   S++++Y  GRG
Sbjct: 185 TSIPPHNVGELIDACQLLLEQPDATTEDLVKIVPGPDFPTGGVSVEGHASMLDAYETGRG 244

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           G R+RA W  E++GRG W IVVTEIPYQVQKS+LIE++A+LI  K+ PLL D+RDESAED
Sbjct: 245 GVRLRAAWDTEDLGRGVWRIVVTEIPYQVQKSKLIEQLADLIENKKAPLLADVRDESAED 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R++L PK+R+++P++LMES+F LSD+ETRFP+NMNVL     P+VM L   L+ +L HR
Sbjct: 305 IRLILEPKSRTVEPEVLMESLFKLSDLETRFPINMNVLDATGTPRVMGLKDCLRAFLDHR 364

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R VL RRS +R+  +++R+ +L+GL I +LN+DE+I I+R E++PK  +++ F L+E Q 
Sbjct: 365 RVVLNRRSQWRIARVEKRLHLLEGLRIVFLNLDEVIRIVREEEQPKAALIATFGLSELQA 424

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           D IL+ RLR L +LEE  I+ E   L  E   + +L +S  +QW  I  E+  V++    
Sbjct: 425 DFILDTRLRQLARLEEMTIEKEFKELSEELAALQALTSSETKQWKAIGKELEAVRKALVS 484

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RRT   +   A      +A I +E ITV++S+RGWIR+ K    D S L FKEG
Sbjct: 485 P-----RRTVIGDAVDASAFVAPEAFIPREAITVILSDRGWIRAAKGKVDDPSELKFKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L   + A+TTD++L+ ++DG+ +T+ A  L SGRGHGE ++L+IDL+   +I+    +
Sbjct: 540 DKLGFLVPAYTTDKLLVGASDGRIFTIGADKLASGRGHGEPLRLMIDLDEKAEIINVVAH 599

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           +   KLL+ S  G  F+  E++++A  R GK  L       +++  +   DHVAV+GEN 
Sbjct: 600 EPDAKLLIASKAGYGFVAPENDLLAQKRGGKQVLNGEMLAMLRIPSQPQADHVAVIGENI 659

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           K LIF + ++PEM RGKGV+LQ+YK GG++DV  F    G  W D  GR   R+  D   
Sbjct: 660 KTLIFPLAELPEMGRGKGVKLQNYKQGGLADVTVFNAEAGPEWADGGGR--RRNWPDWKD 717

Query: 729 WLGKRGGVGSLVPKGFPR 746
           WLGKR G G   P+G  +
Sbjct: 718 WLGKRAGAGRQGPRGLRK 735


>gi|21672462|ref|NP_660529.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008529|sp|Q8K9W2|GYRA_BUCAP RecName: Full=DNA gyrase subunit A
 gi|21623077|gb|AAM67740.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 825

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/773 (32%), Positives = 398/773 (51%), Gaps = 46/773 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V +   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM  +   +  A+KKS
Sbjct: 7   EIVQVDIEKELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMHVLSNYWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYDS+VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDSIVRMAQNFSLRYMLIDGQGNFGSIDGDAAAAMRYTEVR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++++ +L  ++++ V+F   Y+  +  P + PSK PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MSKISQELLADLEKNTVEFIPNYDGTEHIPEILPSKIPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA I +  I++ +L+++I GPDFPT G I+  ++ I E+YR G+G   +RAR
Sbjct: 187 LNEVIDGCLAYIKDDNITLRELIQHIPGPDFPTAG-IINGKKGIEEAYRTGKGKIYIRAR 245

Query: 256 -WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
               +        I+  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D   ++ 
Sbjct: 246 NKIEKNKKNKKESIIFYEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVV 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +    ++++  ++ L+ ++  F +NM  L     P+ + L  ILK +L+HR E++ R
Sbjct: 306 EIKKEAMSEIILNQLYSLTQLQISFGINMVALC-QGQPKTLSLKEILKHFLSHREEIVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-------------------KPKP 415
           RS F +    +R  IL+GL IA +NI+ II +I+                      +   
Sbjct: 365 RSIFELDKTCKRSHILEGLSIALININCIIDLIKKAKSSLEAKELIIKKTWIYKNSEKIN 424

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
                +  TE QV AIL+LRL  L  LE+ ++  E D L  + +++  +L S  +    I
Sbjct: 425 QKDHDYHFTEEQVQAILDLRLHKLTSLEKNKLVLEYDCLTKKIKELKKILKSRDRMREVI 484

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------ 529
             E+  +K  F       +RRT   E +        + +I +E + V +S+ G+      
Sbjct: 485 RDELVSIKNNFGD-----QRRTEITENNPD---ISIEDLINQEDVVVTLSHSGYVKYQPL 536

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
               + K      SA   KE D ++  +  +T D IL  S+ G  Y +    L     H 
Sbjct: 537 SDYNAQKRGGKGKSAAKIKEEDFIESLVVTNTHDTILCFSSRGILYWMKVYQLPESSRHA 596

Query: 588 E--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           +   I  L+ L++ + I        +     + + +++G        E       G   +
Sbjct: 597 KGRPIVNLLPLSNKERITAILPIHEFKDNLNIFMATAQGIVKKSSLKEFKKPRIAGIIAI 656

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            + + +++  V    G +++ +  +N K++ F  + +  M R   GVR           V
Sbjct: 657 NLRANDELIGVSLTNGKNNIMLFTQNGKVVQFLENSVRTMGRTASGVRGIKISKNDKV-V 715

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +  + + +    Y +        +  R   G +  K   ++GK + +
Sbjct: 716 SLIVPYKKESILIATNNGYGKRTKITDFPIKSRATQGVISIKITKKNGKIIGA 768



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 53/142 (37%), Gaps = 2/142 (1%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            +   VV      +R++   +  +  +   + D +   +  +  + IL+ + +G      
Sbjct: 680 TQNGKVVQFLENSVRTMGRTASGVRGIKISKNDKVVSLIVPYKKESILIATNNGYGKRTK 739

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +        + +  +     N  I+ A       +++++++ G    +  SEI    R
Sbjct: 740 ITDFPIKSRATQGVISIKITKKNGKIIGAIQVVEKDQIMMITNAGTLVRIRASEIGVLKR 799

Query: 637 K--GKTFLKVSSEEKMKLVVKV 656
              G   ++ S  EK+  + ++
Sbjct: 800 NTQGVILIRTSKNEKVVALQRI 821


>gi|57505476|ref|ZP_00371404.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195]
 gi|57016301|gb|EAL53087.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195]
          Length = 852

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/777 (31%), Positives = 405/777 (52%), Gaps = 41/777 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + + + + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+K
Sbjct: 8   DSDTQLIDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDGD AAA RYTE
Sbjct: 68  KSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT +AE +L+ +D+D VDF   Y++   EP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 ARMTILAEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN E S+E+++++I GPDFPT G I+  ++ I+++YR GRG  ++R
Sbjct: 188 HSLNELVDGLLYLLDNKEASLEEIMQFIKGPDFPTAG-IIYGKKGIIDAYRTGRGRIKIR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  +   V+
Sbjct: 247 AKTHI-EKRANKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDREGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKRDAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLIELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDA 430
           RR+ + +Q    R  IL+GL IA  NIDE+IA+I+N          +V++F L+E Q +A
Sbjct: 365 RRTIYELQKARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  LL E  ++D +L S     + I  E++E+K  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELLKEIARLDEILKSEALLEDLIREELKEIKAKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   + I+     
Sbjct: 545 IESFFTANTHDTLMFVTDKGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-------- 657
             +  +  L   +  G       SE       G   + +   +++   + V         
Sbjct: 605 SDFAESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVERDLIELSQ 664

Query: 658 --------------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
                               G  +  V +    + F + ++ E+ R  +GV    +K+  
Sbjct: 665 VSQDENLSEEASEENLENVGGKMLFAVTKRGMCIKFPLAKVREIGRVSRGVTAIKFKEKN 724

Query: 697 ISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              V    I  +    +  + +   +  N     L  RGG G +  K   ++ + +S
Sbjct: 725 DELVGAVVIENDEQEVLSVSVKGIGKRTNAGEYRLQSRGGKGVICMKLTDKTKELIS 781


>gi|237802613|ref|YP_002887807.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|231273847|emb|CAX10637.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
          Length = 836

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/762 (31%), Positives = 376/762 (49%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGG I+   E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDK-NLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR     +            +E Q  
Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRT       A      + +I  E + + IS   +++ +            +   
Sbjct: 483 -----RRTRIE--MDAGDVRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVT 535

Query: 550 SLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--- 597
              +            A T D +L+ +  G+ Y L    L  G    +   ++  L    
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERKAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        ++    L + + KG    V      +  +KG   L++   +++    
Sbjct: 596 PGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAAR 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  D++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           R  VG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSLVCDFRETNRRSVGVRSIVINQRNGDVLGA 757



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 54/154 (35%), Gaps = 5/154 (3%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
               A+  ++++L +  G A   P   +         ++ +   N    +V+  V     
Sbjct: 654 ARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G        +     R+        +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSLVCDFRETNRRSVGVRSIVINQRNGDVLGAISVTDCDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
           + +  ++  +  M R  +GVRL + ++G     +
Sbjct: 774 QAIRINMQDVRVMGRATQGVRLVNLREGDTLVAM 807


>gi|86738730|ref|YP_479130.1| DNA gyrase subunit A [Frankia sp. CcI3]
 gi|86565592|gb|ABD09401.1| DNA gyrase subunit A [Frankia sp. CcI3]
          Length = 834

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/770 (30%), Positives = 389/770 (50%), Gaps = 37/770 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
                + ++ + +   ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G    
Sbjct: 6   PPPPGDRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + K +R+VG+V+G  HPHGD ++YD+LVRLAQ +  RYPL+ G GNFG+   D  AA 
Sbjct: 66  RGYFKCSRVVGDVMGNYHPHGDTAIYDTLVRLAQGWSLRYPLVDGNGNFGSPGNDPPAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM  +A  +L+ +D++ VDF   Y+    EP+V PS+FPNLL NG  GIAVGMAT
Sbjct: 126 RYTEARMAPLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMAT 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRL 245
           +IP HN++E+ +     +D+P+ S  +LLE     I GPDFPT G ++  R  I E+YR 
Sbjct: 186 NIPPHNLREVAKGVRWALDHPDASDSELLEALIGLIKGPDFPTSG-LIVGRNGIEEAYRT 244

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG  R+RA   VEE   G   +VVTE+PYQV    L EKIAEL+   R+  + D+RDE 
Sbjct: 245 GRGSIRMRAVVNVEENK-GRTQLVVTELPYQVNPDNLAEKIAELVRDNRVTGIADVRDET 303

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SA   + ++    R     +++ +++  + ++  F +NM  +    VP+ + LD +++ +
Sbjct: 304 SARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVD-GVPRTLRLDQMVRYY 362

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRF 421
           + H+ +V+ RR+ ++++    R+ +L GLLIA  ++DE+I +IRN +        ++ RF
Sbjct: 363 VEHQIDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVINLIRNAESADVARGQLMERF 422

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q  AIL+++LR L  LE  +I  E   L A+   ++++L S  +Q   I  E+ E
Sbjct: 423 SLSEIQATAILDMQLRRLAALERQRIIDEAAELRAKISDLEAILASPTRQRQIIGEELAE 482

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH----- 536
           V E F        RRT              + +I +E + V ++  G+ +  K+      
Sbjct: 483 VVEKFGDE-----RRTRLVPFEGDMS---IEDLIAQEDVVVTVTRGGYAKRTKTDLYRSQ 534

Query: 537 ---SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 +     +E D ++      T   +L  +  G+ Y   A  L       +   + 
Sbjct: 535 RRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVA 594

Query: 594 IDL-----NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
             L         +++    Y++   L++ + +G        +  +N   G   + +  ++
Sbjct: 595 NILAFGQDERIAEVIAVKDYEAAPYLVLATKRGLCKKTALHDFDSNRAGGLVAINLRDDD 654

Query: 649 KMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYK-DGGISDVICF 703
           ++     V  GD + +V  N + + F  D   +  M R   GV    +  +  +  +   
Sbjct: 655 ELIAARLVAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDAEDELLSMDVV 714

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   + +    Y +        +  RGG G L  K     G  + +
Sbjct: 715 VPGTTADLLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKIVSTRGGLVGA 764



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVT-GDHVAVVGE 666
           T  LLV +S G A     +E     R GK  L    VS+   +   + V   D +  +  
Sbjct: 719 TADLLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKIVSTRGGLVGALVVDPDDQLYAIAS 778

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           N  +L      +    R   GVRL   + G     +        T
Sbjct: 779 NGGVLRTVAKDVRRAQRQTMGVRLIDLESGVQVVGVARNADAEDT 823


>gi|209885354|ref|YP_002289211.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5]
 gi|209873550|gb|ACI93346.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5]
          Length = 905

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/851 (31%), Positives = 401/851 (47%), Gaps = 113/851 (13%)

Query: 6   ISNSNTLVEE-----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +++     E      ++K VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++ 
Sbjct: 1   MTDPKDPTESGSGPVDIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYG 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG+
Sbjct: 61  MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTE+R+ ++A  +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG 
Sbjct: 121 VDGDMPAAMRYTESRLQKIAHSLLDDIDKDTVDFQPNYDASEREPKVLPAKFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A +ALIDNP + I+ L+  + GPDFPTGGII+  R+ I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACIALIDNPALGIDDLINIVPGPDFPTGGIIL-GRQGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y LGRG   +R +  +E + +    IVV+EIPYQV K+ ++E+IAEL+  K+I  + D
Sbjct: 240 SAYHLGRGSIVMRGKVSIETIRKDREAIVVSEIPYQVNKATMVERIAELVRDKKIEGVSD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   V+    R   PD+++  ++  + ++T F  NM  L  G  PQVM L  +
Sbjct: 300 LRDESDREGYRVVVELKRDAVPDVVLNQLYKFTPLQTSFGANMVALD-GGRPQVMNLKDL 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L  ++A R  V+ RR+ F +     R  IL GL IA  NIDE+I +IR    P     + 
Sbjct: 359 LTVFVAFRENVVSRRTKFLLNKARDRAHILVGLAIAVANIDEVIRVIRTSPDPATARDTL 418

Query: 421 F-----------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                          L+  Q  AIL+LRL+ L  L   +I  EL
Sbjct: 419 MSRDWPARDVETMMMLIDDPRHRIAEDGTARLSMEQAKAILDLRLQRLTALGRDEISEEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  E      +L S  +  + +  E+  +KE F+       RRT   +          
Sbjct: 479 DKLAVEIADYLDILRSRARVQDIVRNELNAIKEEFATP-----RRTMIIDQEGE---VED 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+++          K      S +  +E D +     A T   +
Sbjct: 531 EDLIQREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVARLFVASTHTPV 590

Query: 564 LLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G+ Y      L        G+A+  ++ +   + I T               ++
Sbjct: 591 LFFSSRGQVYKEKVWRLPMAAPSARGKALINILPMEQGERITTIMPLPEDESSWGELDVM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS 674
             ++ GN    + S+ +   R G   +K+   E +  V      D V +     + + F 
Sbjct: 651 FATTGGNVRRNKLSDFVDVRRSGIIAMKLGEGEAIVDVQICKENDDVLLTAAGGQCIRFP 710

Query: 675 IDQIPE-MSRGK-GVRLQSYKDGGISDVICF----------------------------- 703
           I  +     R   GVR  +  +G     +                               
Sbjct: 711 ITDVRVFQGRTSMGVRGITLGEGDRLISLTILRHMDVSADERAAYLRRANAVRRGGADDE 770

Query: 704 --KICEGLT-------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                E  T                    +  +   Y +  +        RGG G +   
Sbjct: 771 AGTDHEEATGAIELGEQRYVEMSANEQFVLTISENGYGKRSSSYEYRTTGRGGKGIVAMS 830

Query: 743 GFPRSGKFLSS 753
              R+GK + S
Sbjct: 831 VNDRNGKLIGS 841



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVG 665
           +   +L +S  G        E     R GK  + +S  ++   +     V   D + +V 
Sbjct: 795 NEQFVLTISENGYGKRSSSYEYRTTGRGGKGIVAMSVNDRNGKLIGSFPVDDSDQIMLVT 854

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           +  +L+   ++ I  + R  +GV + +  D      +     EG 
Sbjct: 855 DKGQLIRCPVEDIRIVGRSTQGVTVFNTADDERVVSVERLTDEGE 899


>gi|156740349|ref|YP_001430478.1| DNA gyrase subunit A [Roseiflexus castenholzii DSM 13941]
 gi|156231677|gb|ABU56460.1| DNA gyrase, A subunit [Roseiflexus castenholzii DSM 13941]
          Length = 823

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/755 (32%), Positives = 404/755 (53%), Gaps = 30/755 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+  ++   +   YL YA+S I  RA+PD RDG KPV  RI++ M +MG+     FKK A
Sbjct: 6   VRTRNITEEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGE++GK+HPHGD +VYD+LVRLAQP+  RYPL+ GQGNFG++DGD  AA RYTEAR+
Sbjct: 66  RIVGEILGKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSVDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T +AE +L  ++++ VDFRD ++ +  EPVV P++ PNLL NG +GIAVGMAT+IP HN+
Sbjct: 126 TPIAEEMLADIEKNTVDFRDNFDGQYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A   LIDNP+ ++E L++ + GPDFPT G+I+   E I+ +Y  GRG   +RA+ 
Sbjct: 186 SEVCDAITHLIDNPDATVEDLVKILPGPDFPTAGMIL-GTEGIMNAYSTGRGHIIIRAKA 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE  RG++ IVVTE+PYQV K+RL E+IAEL   ++I  + D+RDES      ++   
Sbjct: 245 HIEEAARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIIL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   P  ++ +++  + M+T F +NM  L   GR P+++ L  +L+E++ HRREV+ RR
Sbjct: 305 KQDAQPKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRMLQEYIDHRREVIRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAIL 432
           + F +     R  IL+GL IA  ++D +I  IRN          +++ F+L+E Q +AIL
Sbjct: 365 TEFDLDKARARAHILEGLKIALDHLDAVITTIRNSRSRDNARANLMNGFALSEAQANAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++L  L  LE  +I+ E   ++    +++ +L + ++  + I  ++ ++K  +  +   
Sbjct: 425 EMQLGRLAALERQRIEEEYREVIRLIGELEDILANPRKILHLIKQDLADLKAKYGDA--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL--------H 544
             RRT       A+       +I    + + +++RG+++                     
Sbjct: 482 --RRTRII--PEANGEVSDDDLIPDVKVLITLTDRGYVKRQSPDVYRTQRRGGRGIRGAT 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
            +E D ++  L A+T D +L  +  GK Y + A  L       +   +  LI L   + +
Sbjct: 538 TREQDVVRHILAANTMDDLLFFTDRGKVYQIKAHELPDASRTAKGLPLVNLIALEPGEQV 597

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            +      ++    L++ + +G        E       G   + +   +++  V    G 
Sbjct: 598 TSVLAVPDFEKAEYLIMATVRGKIKRTSIREYSQVRSNGLIAIGLEEGDELGWVAMTQGH 657

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           + V +     + + F  +++  M R   GV   +  +G     +     E    +     
Sbjct: 658 EDVLLTTARGQTIRFRQEEVRPMGRPATGVIGIALAEGDRVVSMDLA-QENAALLVVTAH 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +  +     L  R   G +  +   R G  ++
Sbjct: 717 GYGKRTDLGEYPLKGRATGGVITIRL--RPGDEVA 749



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 73/219 (33%), Gaps = 11/219 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E      + L     EK    ++ + RG I+              L A+  +EGD L  
Sbjct: 591 LEPGEQVTSVLAVPDFEKAEYLIMATVRGKIKRTSIREYSQVRSNGLIAIGLEEGDELGW 650

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  + +LL +  G+        +         +   I L     +V+  +      
Sbjct: 651 VAMTQGHEDVLLTTARGQTIRFRQEEVRPMGRPATGVIG-IALAEGDRVVSMDLAQENAA 709

Query: 614 LLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKL 670
           LLVV++ G     +  E     R   G   +++   +++ +   V  + +  ++ E+  +
Sbjct: 710 LLVVTAHGYGKRTDLGEYPLKGRATGGVITIRLRPGDEVAVAHVVRENSLLTIITESGMV 769

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +      I    R  +GV + +         +C +  + 
Sbjct: 770 MRTEASGISMFGRNTQGVTIVNLTSNDRVAALCVEAPDE 808


>gi|256027572|ref|ZP_05441406.1| DNA gyrase subunit A [Fusobacterium sp. D11]
 gi|260495354|ref|ZP_05815481.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33]
 gi|289765531|ref|ZP_06524909.1| DNA gyrase subunit A [Fusobacterium sp. D11]
 gi|260197132|gb|EEW94652.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33]
 gi|289717086|gb|EFD81098.1| DNA gyrase subunit A [Fusobacterium sp. D11]
          Length = 811

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/750 (32%), Positives = 396/750 (52%), Gaps = 14/750 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKK
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L+ +D++ +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP H
Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA+IDN +I I +L+ YI GPDFPTG II   R  I+E+Y+ GRG  +VR 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIID-GRAGIIEAYKTGRGKIKVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L 
Sbjct: 241 KVDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ R
Sbjct: 301 EVKKGEEPELVLNKLYKYTDLQTTFGVIMLSLV-NNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   + A  +++  +L    + ++ +  E+ E+KE ++    
Sbjct: 420 LDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYDIMKKELLELKEKYADKRR 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                     +        +  +       V        ++ +     +SAL+  E D  
Sbjct: 480 TKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALNTIEDDYA 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI--QLLIDLNHNQDIVTAFV-- 607
           +    A T D I++ +  GK Y + A  +              +I+L+  + +    V  
Sbjct: 540 EKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEKVRDTIVIK 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
            +    +++ ++  G        E       G   +K   ++ +  V  +     + + +
Sbjct: 600 EFLPEKEVVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEILI 659

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
              +     F  D I    R  +GV+  + + G +              +      Y + 
Sbjct: 660 ATHDGYCTRFLTDTIRATGRSTQGVKAITLRKGDMVVSAMLIKNPETDILTITENGYGKR 719

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +        RGG G +  K   ++GK +S
Sbjct: 720 TSLDEYPQYNRGGKGVINLKVNEKTGKVVS 749



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 53/149 (35%), Gaps = 5/149 (3%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + DG         + +     + ++ +     +  +    + +    +L ++  G     
Sbjct: 661 THDGYCTRFLTDTIRATGRSTQGVKAITLRKGDMVVSAMLIKNPETDILTITENGYGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
              E     R GK  + +   E   K+  V++V+ D  +  +  N  ++  SI++I  + 
Sbjct: 721 SLDEYPQYNRGGKGVINLKVNEKTGKVVSVLEVSEDEELMCITSNGIVIRTSINEISRIG 780

Query: 683 RG-KGVRLQSYKDGGISDVICFKICEGLT 710
           R  +GVR+    D      I     E   
Sbjct: 781 RATQGVRIMKVADDEKVAAITKIKKEEDL 809



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  L        +V+        +L+ ++S G   
Sbjct: 710 TITENGYGKRTSLDEYPQYNRGGKGVINLKVNEKTGKVVSVLEVSEDEELMCITSNGIVI 769

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
               +EI    R   G   +KV+ +EK+  + K+  +   
Sbjct: 770 RTSINEISRIGRATQGVRIMKVADDEKVAAITKIKKEEDL 809


>gi|320102792|ref|YP_004178383.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644]
 gi|319750074|gb|ADV61834.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644]
          Length = 914

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/767 (31%), Positives = 370/767 (48%), Gaps = 35/767 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +++   L+E YL YA+S I  RA+PD RDG KP  RRI+ AM ++GL  G +  K A I
Sbjct: 18  PLNIEEELKESYLTYAMSVIVSRALPDARDGLKPSQRRILAAMLDLGLTPGGSTSKCAGI 77

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGE + + HPHGD S+Y +L R+AQ +  R+ L++GQGNFG+I G   AA RYTEA+++ 
Sbjct: 78  VGETMKRYHPHGDNSIYPTLARMAQWWNMRHLLVTGQGNFGSIHGLPPAAMRYTEAKLSP 137

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VA  +L  +  D VDF+ +Y+E+  EP V P++FPNLL NG+ GIAVGMATSIP HN+ E
Sbjct: 138 VAAEMLDDIKLDTVDFQPSYDEKHQEPRVLPARFPNLLVNGSGGIAVGMATSIPPHNLGE 197

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +C+A +ALIDNP I  E L+E + GPDFPTGG ++  R  I E+Y  GRG   +RA+  V
Sbjct: 198 VCDALIALIDNPAIDFEDLIEKLPGPDFPTGG-VICGRMGIREAYLTGRGRIVLRAKHVV 256

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-RIVLFPKN 317
           EE   G   IV TEIPYQ+ K  L++K+ +L+   RI  + D+ DES       ++    
Sbjct: 257 EETRDGRTQIVFTEIPYQLMKEPLLKKLGDLVNTDRIKGIADVVDESDRRQPVRIVVKLK 316

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ DP++++  ++  S ++  F + M  L     P+ + L  +LK +L HR  V+ RR++
Sbjct: 317 RNEDPNVILNQLYQYSPLQDTFGVIMLALVD-GRPKTLTLRELLKIYLDHRANVIRRRTA 375

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL-------------- 423
           F ++    R  +++GLLIA   IDEII IIR+   P         +              
Sbjct: 376 FLLRRDRARAHVVEGLLIALDMIDEIIHIIRSSPNPTEARTRLMGMAVGPDVMRRALNDP 435

Query: 424 --------TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
                   T NQ DAIL +RL+ L  LE  ++ +E   L A     + +L    +    I
Sbjct: 436 EAQATTGLTRNQADAILAMRLQQLTGLELDKLVAEYRELRAAIADAEDILAREVRVREII 495

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             ++ E+K  ++                +      +  ++       +          + 
Sbjct: 496 KADLEELKRKYADPRRTVISDEELGSYDKEALIREEYMVVTITDGGYIKRLPPSTYRAQG 555

Query: 536 H-SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +A   KEGD L     A T D +L  +  G  + L   ++        G AI  
Sbjct: 556 RGGRGKTAAGTKEGDFLAHMFVALTHDYLLFFTDQGLIHWLKVYDVPIAPRTATGRAIVN 615

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++L   + I        +     L + + +G       S      R G   L +   ++
Sbjct: 616 LLELREGERITGVIPVRRFPDNEFLFMATRRGTVKKTPLSAYSRPQRGGIIALGLEEGDQ 675

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKIC 706
           +  V +   GDHV +   N   + F    +  M R   GVR    + D  +  ++     
Sbjct: 676 LIAVARTQPGDHVILSTRNGMAIRFEESDVRPMGRPACGVRGIRLEGDDQVVGMVVANGP 735

Query: 707 EG-LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +   + +      + +           RGG G +  K   R+G  ++
Sbjct: 736 DDPASLLTVCSNGFGKRTRLSEYRAQHRGGKGLIDIKTTERNGPVVA 782



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 85/252 (33%), Gaps = 17/252 (6%)

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA--TLQQAMIEKEPITVVISNRGWIRS 532
           +   ++      +  T  GR      E+   ++    +            + + RG ++ 
Sbjct: 592 LIHWLKVYDVPIAPRTATGRAIVNLLELREGERITGVIPVRRFPDNEFLFMATRRGTVKK 651

Query: 533 LKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
               +        + AL  +EGD L         D ++L + +G A      ++      
Sbjct: 652 TPLSAYSRPQRGGIIALGLEEGDQLIAVARTQPGDHVILSTRNGMAIRFEESDVRPMGRP 711

Query: 587 GEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              ++  I L  +  +V   V    D    LL V S G       SE  A  R GK  + 
Sbjct: 712 ACGVRG-IRLEGDDQVVGMVVANGPDDPASLLTVCSNGFGKRTRLSEYRAQHRGGKGLID 770

Query: 644 VSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
           + + E+    + +      D V +  E   L+   + +  ++ R  +GVRL    +G   
Sbjct: 771 IKTTERNGPVVAIAKVTDADEVMLTTERGILIRTGLSETRDIGRNTQGVRLIRVDEGDRV 830

Query: 699 DVICFKICEGLT 710
             +       L+
Sbjct: 831 VALAKLPESELS 842


>gi|192291247|ref|YP_001991852.1| DNA gyrase subunit A [Rhodopseudomonas palustris TIE-1]
 gi|192284996|gb|ACF01377.1| DNA gyrase, A subunit [Rhodopseudomonas palustris TIE-1]
          Length = 913

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/858 (31%), Positives = 406/858 (47%), Gaps = 115/858 (13%)

Query: 1   MGV-DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M   D+          +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++
Sbjct: 1   MSDKDDEKPEGPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            M E G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG
Sbjct: 61  GMYENGFEWNKQYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD  AA RYTE+R+T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG
Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +A +ALID+P +SI+ L + + GPDFPTGGII+  R  I
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIIL-GRAGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y+ GRG   +R +  +E V +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + 
Sbjct: 240 RAAYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIG 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  D   V+    R   P++++  ++  + ++T F  NM  L  G  PQ+M L  
Sbjct: 300 DLRDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVAL-EGGRPQLMNLKD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---- 415
           +L  ++A R +V+ RR+ F +     R  IL GL IA  NIDEII +IRN   P      
Sbjct: 359 LLTVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARET 418

Query: 416 -------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                           L+  Q  AIL+LRL+ L  L   +I  E
Sbjct: 419 LMSRDWPAADVAAMITLIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           LD L  E      +L S  +    +  E+ EVK  F+       RRT   E         
Sbjct: 479 LDKLAVEIADYLEILRSRARVQAIVKTELGEVKAEFATP-----RRTVIAEQEGE---VE 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I++E + V +S+ G+++          +      S +  +E D +     A T   
Sbjct: 531 DEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTP 590

Query: 563 ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KL 614
           +L  S+ G+ Y      L      G G+A+  ++ L   + I T               +
Sbjct: 591 VLFFSSRGQVYKEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDV 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  ++ GN    + S+ +   R G   +K+   E +  V   T  D V +     + + F
Sbjct: 651 MFATTGGNVRRNKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRF 710

Query: 674 SIDQIPEM-SRGK-GVRLQSYKDGGISDVICF------KICEGLTWIDSAG--------- 716
            +  +     R   GVR  +   G     +           E  T++  +G         
Sbjct: 711 PVPDVRVFSGRTSMGVRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAIRRAATGE 770

Query: 717 -----------------------------------------RSYNRSENDLLGWLGKRGG 735
                                                      Y +  +        RGG
Sbjct: 771 ENEPVETPEAEAEEGDASAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGG 830

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +      R+GK ++S
Sbjct: 831 KGIVAMSVNSRNGKLVAS 848



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSS-EEKMKLVVKVTG-DHVAVVG 665
           S   +L +S  G        E     R GK    + V+S   K+     V   D + +V 
Sbjct: 802 SEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRNGKLVASFPVEDSDQIMLVT 861

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +N +L+   ++ I    R  +GV + +  D      +
Sbjct: 862 DNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSV 898



 Score = 42.8 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 5/110 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L +S +G      +    +    G+ I  +   + N  +V +F  + + ++++V+  
Sbjct: 804 QFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRNGKLVASFPVEDSDQIMLVTDN 863

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           G         I    R   G      + +EK+  V ++        GEN 
Sbjct: 864 GQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVERIPETDD---GENG 910


>gi|227549446|ref|ZP_03979495.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078523|gb|EEI16486.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 868

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/770 (28%), Positives = 373/770 (48%), Gaps = 24/770 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D ++       + ++ + +   ++  Y+ YA+S I  RA+PD+RDG KPVHRR+I+ 
Sbjct: 1   MSDDTLTGDG---FDRIQPIDINDEMQTSYIDYAMSVIVGRALPDVRDGMKPVHRRVIYT 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     ++ KSA+ VGE +  LHPHGD ++YD+LVR+AQP+  RYPLI GQGNFG+
Sbjct: 58  MYDSGYRPERSYVKSAKPVGETMANLHPHGDSAIYDTLVRMAQPWSMRYPLIDGQGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTE +MT +A  +++ + E+ V+F   Y+ +  EP + PS+ PNLL NG+
Sbjct: 118 PGNDGPAAMRYTECKMTPLAMEMVRDIRENTVNFSPNYDGKTKEPDILPSRVPNLLMNGS 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN++E+ EA          + + +++ ++E + GPDFPT G ++   
Sbjct: 178 GGIAVGMATNIPPHNLRELAEAIYWILDNHTADEKTTLDAVMERVKGPDFPTSG-LIVGD 236

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I ++Y  GRG  R+R    +EE+G     IV+TE+PYQV     I  IA+ I   ++P
Sbjct: 237 TGIKDAYTTGRGSIRMRGVTEIEEIGS-RQVIVITELPYQVNPDNFIANIADHIANGKLP 295

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
               I DE S      ++    R   P +++ +++  S +ET F  NM  +    VP+ +
Sbjct: 296 GASRIDDESSDRVGMRIVVSLKRDAVPRVVLNNLYKHSQLETNFSANMLSIVD-GVPRTL 354

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            LD +L+ ++ H+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR       
Sbjct: 355 RLDQMLRYYVKHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDE 414

Query: 416 VMV---SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                     + E Q + IL+++LR L  LE  +I  +L  +  +   +  +L S ++Q 
Sbjct: 415 ARTGLIELLDVDEIQANEILSMQLRRLAALERQKIVDDLAEIERQIADLKDILASPERQR 474

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +  E+ E+ E +           T         A     +          +     ++
Sbjct: 475 AIVGDELAEIVERYGDDRRTRLIAATGDVSEEDLIARENVVVTITSTGYAKRTKVDAYKA 534

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI 590
            K     +     K+ D +K      T D IL  +  G+ Y L A  L        G+ +
Sbjct: 535 QKRGGKGVRGAELKQDDVVKNFFICSTHDWILFFTNFGRVYRLKAYELPEAGRTARGQHV 594

Query: 591 QLLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L++    + I   +    Y+    L++ + +G       ++  +    G   + ++  
Sbjct: 595 ANLLEFQPEERIAQVIQIHSYEDAPYLVLATREGRVKKSRLTDYESARSAGLIAINLNEG 654

Query: 648 EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICF 703
           +++         D V +V E  + + F+ D   +  M R   GV+   ++       +  
Sbjct: 655 DQLIGAALASDEDDVLLVSEQGQAIRFTADDEQLRPMGRATAGVKGMRFRGDDQLLAMTV 714

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +    + +    Y +           RGG+G +  K  P+ GK + +
Sbjct: 715 -VHDNDFLLVATSGGYGKRTAIGEYATQGRGGLGVMTFKYTPKRGKLIGA 763



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 6/158 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           A   D +LL+S  G+A    A +      G   A    +    +  ++   V      LL
Sbjct: 663 ASDEDDVLLVSEQGQAIRFTADDEQLRPMGRATAGVKGMRFRGDDQLLAMTVVHDNDFLL 722

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLL 671
           V +S G        E     R G   +         K+   + V   D +  +     ++
Sbjct: 723 VATSGGYGKRTAIGEYATQGRGGLGVMTFKYTPKRGKLIGALAVEEEDQIFAITSAGGVI 782

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
              + QI   SR   GVRL    +      I   + + 
Sbjct: 783 RTEVAQIRPSSRATMGVRLVDLGEDVELLAIDKNVEDE 820


>gi|308063512|gb|ADO05399.1| DNA gyrase subunit A [Helicobacter pylori Sat464]
          Length = 826

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/763 (33%), Positives = 403/763 (52%), Gaps = 25/763 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNLINETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIGDLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK-----EPITVVISNRGWIRSLKSHS 537
           KE FS       RRT   EV          A             V   +           
Sbjct: 478 KEQFSSP-----RRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               + +  E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI 
Sbjct: 533 KGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASRIAMGKAIVNLIS 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +     L   +  G       SE  +N   G   + +   +++  
Sbjct: 593 LAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFDSNY-NGMRAIVLDEGDELVS 651

Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
              V  +  H+ +       + F ++ + E+ R  +GVR     +            +  
Sbjct: 652 AKIVDKNAKHLLIASYLGLFIKFPLEDVREIGRTTRGVRGIRLNENDFVVGAVVISDDSN 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +     +           RGG G +  K   ++G  +S
Sbjct: 712 KLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 754



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G     P  ++         ++ +    ++  +    + D + KLL VS  G        
Sbjct: 669 GLFIKFPLEDVREIGRTTRGVRGIRLNENDFVVGAVVISDDSNKLLSVSENGLGKQTLAE 728

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SR 683
                +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI  I E   R
Sbjct: 729 AYREQSRGGKGIIGMKLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGR 788

Query: 684 -GKGVRLQSYKDGGI 697
              GV+L    D  +
Sbjct: 789 NTSGVKLIDTADKVV 803


>gi|110633753|ref|YP_673961.1| DNA gyrase subunit A [Mesorhizobium sp. BNC1]
 gi|110284737|gb|ABG62796.1| DNA gyrase subunit A [Chelativorans sp. BNC1]
          Length = 929

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/855 (29%), Positives = 413/855 (48%), Gaps = 117/855 (13%)

Query: 6   ISNSNT---LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +++  T      ++++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++A  
Sbjct: 1   MTDQTTRGPDEPDDIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYASY 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+ID
Sbjct: 61  ESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSMRVPLIDGQGNFGSID 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTEAR+T+VA  +L+ +D+D VDF+DTY+   SEP + P++FPNLL NG+ G
Sbjct: 121 GDPPAAMRYTEARLTKVAHELLEDIDKDTVDFQDTYDGTGSEPRILPARFPNLLVNGSGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+    +ALIDNP + + +LLE I GPDFPTGGII+  R  I  +
Sbjct: 181 IAVGMATNIPPHNLSEVVNGCVALIDNPALQLPQLLEIIPGPDFPTGGIIL-GRSGIHSA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +R +  +E++      I++TE+PYQV K+++IEK+AEL+  KRI  + DIR
Sbjct: 240 YATGRGSVVMRGKTSIEQIRNEREAIIITEVPYQVNKAQMIEKMAELVREKRIEGISDIR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R  + ++++  ++  + ++T F  NM  L+ G  P+VM L  +L+
Sbjct: 300 DESDRQGYRVVIELKRDANAEVILNQLYRFTPLQTSFGANMVALN-GGKPEVMNLLDMLR 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------- 415
            ++A R EV+ RR+ + ++ +  R  +L GL IA  NIDE+I +IR    P+        
Sbjct: 359 AFVAFREEVVTRRTKYLLRKVRERAHVLVGLAIAVANIDEVIQLIRRAPDPQTAREQLME 418

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      ++L+E Q  AIL+LRL+ L  L   +I  EL+ 
Sbjct: 419 RRWPAQDVESLILLIADPRHKINDDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNK 478

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           + AE +    +L+S  +    +  E+  V++ F        RRT   E     +    + 
Sbjct: 479 IGAEIQDYLDILSSRARVQGIVKDELIAVRDEFGTP-----RRTEITEGGADME---DED 530

Query: 514 MIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V ++++G+I+ +               S +  K+ D +     A+T   IL 
Sbjct: 531 LIPREDMVVTVTHKGYIKRVPLSIYRAQARGGKGRSGMSTKDEDFVTRLFVANTHTPILF 590

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G  Y      L   + +  G+ ++ ++ L   + I +               ++  
Sbjct: 591 FSSRGIVYKEKVWRLPVGTPQSVGKFLRNMLPLVEGERITSIMPLPEDEESWAALDVMFA 650

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTGDHVAVVG-ENRKLLIFSI 675
           +++G     + S+     R GK  +K+    +++  V   T D   ++   + + + F +
Sbjct: 651 TTRGTVRRNKLSDFTQVNRNGKIAMKLDEEGDEILAVFTCTEDDDVLLTAASGQCIRFPV 710

Query: 676 DQIPEM-SRGK-GVRLQSYKDGGISDVICFK----------------------------- 704
             +     R   GVR  +  DG     +                                
Sbjct: 711 TDVRVFAGRNSIGVRGINLPDGDKVISMAIVGHVDATPAERAAYLKQAAAERRLSNGSDE 770

Query: 705 ------------------------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                                          +  +   Y +  +     +  RGG G   
Sbjct: 771 EEIALTNEEVGEETVLSPERYEELKAREQFVLTVSEYGYGKRSSSYDFRVIGRGGKGIRA 830

Query: 741 PKGFPR--SGKFLSS 753
                R   G  +++
Sbjct: 831 TDVSKREEIGSLIAA 845



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 7/98 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEK---MKLVVKV-TGDHVAVV 664
              +L VS  G        +     R  KG     VS  E+   +     V   D + +V
Sbjct: 798 EQFVLTVSEYGYGKRSSSYDFRVIGRGGKGIRATDVSKREEIGSLIAAFPVAPEDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
               +++   +  I   SR  KGV + +  DG     +
Sbjct: 858 SNAGQIIRVPVTGIRIASRATKGVTIFNTADGERVVSV 895


>gi|306821824|ref|ZP_07455416.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550131|gb|EFM38130.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 812

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/765 (31%), Positives = 422/765 (55%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     +   ++ V L+  +E+ Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E+G
Sbjct: 1   MSEELIDIHGKIEDVDLKTQMEKCYIDYSMSVIIGRALPDIRDGLKPVHRRILYSMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    +F KSA +VG  +   HPHGD S+YD++VR+AQ F  RY L+ G+GNFG +DGD 
Sbjct: 61  LTPDKSFHKSANVVGHTMAYYHPHGDSSIYDAMVRMAQNFSMRYMLVEGKGNFGTLDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AAYRYTEA+M +++  +L+ + +D V+FR  ++E+  EP V PS+FPNLL NG++GIAV
Sbjct: 121 PAAYRYTEAKMNKISTEMLRDLGKDTVNFRPNFDEKKQEPEVLPSRFPNLLVNGSNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN+ E+ +A + +IDNP+ +++ ++ +I GPDFPTG  ++  RE+I ++Y  
Sbjct: 181 GMATSIPPHNLGEVIDAVVEIIDNPDATLDDIMNHIKGPDFPTGA-LIMGREAIKKAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +EE+  G   I+VTEIPYQV K+ L+EKI +L+  K+I  + D+RDES
Sbjct: 240 GRGKIIVRAKTEIEELPNGKSEIIVTEIPYQVNKAMLVEKIGQLVRDKKIEGVTDLRDES 299

Query: 306 AEDVRIVL-FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           ++   I +     R ++P++++ ++F  S ++  + + +  +     P+++ L  IL+ +
Sbjct: 300 SKKTGIKIVIETRRDVNPNVVLNNLFKHSSLQEVYSVILLSIVD-GEPKILNLVDILQYY 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-KPVMVSRFSL 423
           L +++EV+ RR+ F +     R+ +++GLLIA  NIDE+I IIR+        ++ RFSL
Sbjct: 359 LKYQKEVVTRRTKFDLNKALERLHLVQGLLIAIDNIDEVIEIIRSAYDDAMQKLMDRFSL 418

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL++RLR L+ LE+ +++ E   L  +    +S+L S ++  + I  EI E++
Sbjct: 419 SEVQATAILDMRLRRLQGLEKEKLQDEERELGEKIAYFNSILESEEKLLSIIKEEIIEIR 478

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           + +        RRT    +         +  I  E +T+ ++++G+I+          K 
Sbjct: 479 DKYKD-----VRRTQITSMPHE---IDIKDTIPNEEVTITLTHQGYIKRLPVDTYKAQKR 530

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LL 593
               +S++  KE D ++  L     ++IL ++  GK Y L A  +       +      L
Sbjct: 531 GGKGISSMTTKEEDFVEKLLITSNHEKILFITNKGKIYNLNAYEIPQTSRTAKGSNIINL 590

Query: 594 IDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + L  ++ I T       +    +++ + KG       SE   + R+G   + +  ++++
Sbjct: 591 LPLEKDEKIATIITTRENEDNAYIVMCTKKGIIKKTRISEFTKSKRQGMKAINLKEDDEL 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
              +    + ++ +V +    ++F  + +  M R   GV     K       +     + 
Sbjct: 651 VNSLLTADNTNLFLVTKKGMAIMFEENTLRPMGRTATGVIAMRLKKDDEIVSLEIASNDK 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +  +   Y +        +  R GVG    K   ++G    +
Sbjct: 711 -QVLIISENGYGKRTQVSKYKVQSRAGVGVKTYKITEKTGNIADA 754



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/443 (12%), Positives = 141/443 (31%), Gaps = 19/443 (4%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           K       +R+ L++ +         ++   ++   D    +   F LS+++    L+M 
Sbjct: 371 KFDLNKALERLHLVQGLLIAIDNIDEVIEIIRSAYDDAMQKLMDRFSLSEVQATAILDMR 430

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           +  +  + +    D   +             S  ++ +I +   I        +   +I 
Sbjct: 431 LRRLQGLEKEKLQDEERELGEKIAYFNSILESEEKLLSIIKEEIIEIRDKYKDVRRTQIT 490

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY-QIKSELDNLLAEKEKIDS 463
           ++    D    +     ++T      I  L + + +  +   +  S +     +  +   
Sbjct: 491 SMPHEIDIKDTIPNEEVTITLTHQGYIKRLPVDTYKAQKRGGKGISSMTTKEEDFVEKLL 550

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEK 517
           + ++ ++               +         + +        E        +     E 
Sbjct: 551 ITSNHEKILFITNKGKIYNLNAYEIPQTSRTAKGSNIINLLPLEKDEKIATIITTRENED 610

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
               V+ + +G I+  +           + A++ KE D L  +L       + L++  G 
Sbjct: 611 NAYIVMCTKKGIIKKTRISEFTKSKRQGMKAINLKEDDELVNSLLTADNTNLFLVTKKGM 670

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           A       L         +   + L  + +IV+  +  +  ++L++S  G     + S+ 
Sbjct: 671 AIMFEENTLRPMGRTATGVI-AMRLKKDDEIVSLEIASNDKQVLIISENGYGKRTQVSKY 729

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
              +R G         EK   +     V   D V ++  +  L+   + +I  +SR   G
Sbjct: 730 KVQSRAGVGVKTYKITEKTGNIADAKIVEESDEVMIINSDGTLIRTPVAEISLLSRDTSG 789

Query: 687 VRLQSYKDGGISDVICFKICEGL 709
           V++    +  I   I     E  
Sbjct: 790 VKVMRSGENDIISAIEIIQSEEE 812


>gi|15603946|ref|NP_220461.1| DNA topoisomerase IV subunit A [Rickettsia prowazekii str. Madrid
           E]
 gi|7387992|sp|Q9ZE79|PARC_RICPR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3860637|emb|CAA14538.1| TOPOISOMERASE IV SUBUNIT A (parC) [Rickettsia prowazekii]
 gi|292571664|gb|ADE29579.1| Topoisomerase IV subunit A [Rickettsia prowazekii Rp22]
          Length = 738

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/739 (48%), Positives = 516/739 (69%), Gaps = 3/739 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT++  L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTEICMLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A L LIDNP+  I  ++ +I GPDFPTGGII++  E I  +Y  GRG FR
Sbjct: 181 PPHNLHELCDALLYLIDNPQAGINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSFR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQ+QKS+LIE+IA L+  K+IPL+  IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQIQKSKLIEQIAILLKDKKIPLISSIRDESTDIIRV 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLVHRKNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I +R+EILK L I YLN+DEII IIR ED+PK +++ RF ++  QV+ I
Sbjct: 361 IIRRSTYLLNKIKQRLEILKVLRIVYLNLDEIIEIIREEDEPKTIIMERFKISAIQVEVI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSL+KLEE+ I  E  NL  ++  ++ +L + K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLQKLEEHAIIDEHSNLQKQQAILEKILKNHKELWQIVKKEIKAVQTKFGLNTI 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV   ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVDLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDTE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  + A+TTD+IL++S+ G+ +TL A N+  G+G G     L+    N DI    VY   
Sbjct: 541 KFIIEAYTTDKILIISSKGRFFTLLADNISKGKGTGGVSIKLLVDIGNNDITNILVYKPN 600

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E+IA T+ GK  + +         + V GD +A +GE+R+LL
Sbjct: 601 QLLLLASSIGKGFLVNSNEVIAQTKTGKQIMNIPEGYSCIACLPVNGDSIACIGESRRLL 660

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL+W D       ++      +LG
Sbjct: 661 VFNIDEIPEMKKGQGVVLQRFKNAKLLDIKIFNKQDGLSWNDGTKIQLEKNIVA---FLG 717

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           KRGG G+  P GFP++ +F
Sbjct: 718 KRGGFGTFPPIGFPKNNRF 736


>gi|328954620|ref|YP_004371953.1| DNA gyrase subunit A [Coriobacterium glomerans PW2]
 gi|328454944|gb|AEB06138.1| DNA gyrase subunit A [Coriobacterium glomerans PW2]
          Length = 922

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/738 (34%), Positives = 379/738 (51%), Gaps = 13/738 (1%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            + + ++ Y++S I  RA+PD+RDG KPVHRRI++AM+E G+      KKSA  VGEVIG
Sbjct: 85  EMRQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVGEVIG 144

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD +VYD++VRLAQ F  R PLI G GNFGNIDGD AAA RYTE+R+ + A  +L
Sbjct: 145 KYHPHGDTAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLARPAMELL 204

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + + +D VD++  Y+E  SEP V P++FPNLL NG+SGIAVGMAT+IP HN+ E  EAA 
Sbjct: 205 RDLQKDTVDWQPNYDESLSEPQVLPARFPNLLVNGSSGIAVGMATNIPPHNLLEAVEAAC 264

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           ALID+PEI+ ++L++ I GPDFPTG  ++   E I ++Y  GRG   VRA+  +E    G
Sbjct: 265 ALIDDPEITTDELMQIIPGPDFPTGA-VIMGTEGIHKAYETGRGSITVRAKAHIESTKTG 323

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              +V TEIPYQV K  L EKIA+L+  KR+  + D+RDES      ++    + + P +
Sbjct: 324 RNRLVFTEIPYQVNKGSLQEKIAQLVNEKRLEGISDMRDESTGKGLRLVIELKKGVIPQV 383

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + +++ F +N   L     PQ + L  +L  ++AH+ +V+ RR+ F ++   
Sbjct: 384 VLNNLYKFTSLQSTFGINNLALV-EGAPQSLSLRDMLSHYIAHQVDVVNRRTRFDLKKAR 442

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+G LIA  +IDE+I+IIR+ +        +  RF  T+ Q  AIL ++LR L  
Sbjct: 443 ARAHILEGYLIALDHIDEVISIIRSSETDAEASARLTERFGFTDRQTAAILEMKLRRLTG 502

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I +ELD L    E  + LL   ++    I  E+RE+   F        R      
Sbjct: 503 LERGKIAAELDALRQAIEYYEDLLAHKEKVLAVIKEEMREIARKFGDPRRTEIREAEKEL 562

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
                 A     +       V        RS K     +S ++ KE D +     A T +
Sbjct: 563 DVEDLIADEDMVVTITHTGYVKRIPVATYRSQKRGGKGVSGVNLKEDDVIAEMFIASTHE 622

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLV 616
            +L  ST GK Y L    L  G       AI  L+     + I +      +     L+ 
Sbjct: 623 FVLFFSTRGKVYRLKVHELPVGSRQARGAAIVNLLPFEEGEKIASVISTRDFPDDEFLMF 682

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI 675
            +  G       S    + R G   + + +++ +  V +V   D + +     K ++F  
Sbjct: 683 ATRSGMVKKTVMSAYDRSRRDGIIAINLKTDDALLDVRRVRPQDKIIMATTEGKAIMFEQ 742

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +Q+    R   GVR    +       +     +G  ++      Y +           RG
Sbjct: 743 EQVRATGRDTSGVRGIDLRGSARVLGMEITNGQGDLFV-ITENGYGKRTPVRDYPTQHRG 801

Query: 735 GVGSLVPKGFPRSGKFLS 752
           G G    +   R G   +
Sbjct: 802 GQGVYTIQMTQRKGMLAA 819



 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 73/201 (36%), Gaps = 8/201 (3%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
               +  M       V  +        +     + A++ K  D+L         D+I++ 
Sbjct: 674 FPDDEFLMFATRSGMVKKTVMSAYDRSRRD--GIIAINLKTDDALLDVRRVRPQDKIIMA 731

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +T+GKA        +   G   +    IDL  +  ++   + +    L V++  G     
Sbjct: 732 TTEGKAIMFE-QEQVRATGRDTSGVRGIDLRGSARVLGMEITNGQGDLFVITENGYGKRT 790

Query: 627 EESEIIANTRKGKTF--LKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS 682
              +     R G+    ++++  + M   +K  G    + ++ +   ++     +I +  
Sbjct: 791 PVRDYPTQHRGGQGVYTIQMTQRKGMLAAMKTVGPQHELFIITKGATVIRVKTGEISQTG 850

Query: 683 RG-KGVRLQSYKDGGISDVIC 702
           R  +GV++ +  DG +   + 
Sbjct: 851 RATQGVKMMNVADGDLVIAVA 871



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 49/150 (32%), Gaps = 2/150 (1%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
             + ++       ++  +  +R+    +  +  +  +    +      +    + +++ +
Sbjct: 725 QDKIIMATTEGKAIMFEQEQVRATGRDTSGVRGIDLRGSARVLGMEITNGQGDLFVITEN 784

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G     P  +  +    G+ +  +        +          +L +++       V+  
Sbjct: 785 GYGKRTPVRDYPTQHRGGQGVYTIQMTQRKGMLAAMKTVGPQHELFIITKGATVIRVKTG 844

Query: 630 EIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           EI    R   G   + V+  + +  V ++T
Sbjct: 845 EISQTGRATQGVKMMNVADGDLVIAVARMT 874


>gi|220924060|ref|YP_002499362.1| DNA gyrase subunit A [Methylobacterium nodulans ORS 2060]
 gi|219948667|gb|ACL59059.1| DNA gyrase, A subunit [Methylobacterium nodulans ORS 2060]
          Length = 911

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/857 (29%), Positives = 399/857 (46%), Gaps = 114/857 (13%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +   N          ++K VS+   +   YL YA+S I  RA+PD RDG KPVHRRI+++
Sbjct: 3   LAEKNDETGAPPPASDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYS 62

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G      + KSARIVG+V+G+ HPHGDQS+YD+LVR+AQ F  R  L+ GQGNFG+
Sbjct: 63  MYENGYLPDRKYVKSARIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRIMLVDGQGNFGS 122

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  AA RYTE+R+ + A  +L+ +D++ VDF   Y+E   EP V P++FPNLL NG 
Sbjct: 123 IDGDPPAAMRYTESRLAKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGA 182

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +  +ALID+P ++IE L E I GPDFPTGG ++  R    
Sbjct: 183 GGIAVGMATNIPPHNLGEVIDGCVALIDDPSLTIEALNEIIPGPDFPTGG-LILGRAGTR 241

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +RA+  VEE+ +    +V TEIPYQV K+ L+EKIA+L+  KRI  + D
Sbjct: 242 AAYMTGRGSVVMRAKSHVEEIRKEREALVFTEIPYQVNKASLVEKIADLVREKRIEGVAD 301

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   ++    R    D+++  ++  + ++T F  NM  L+ G  P+++ L  +
Sbjct: 302 LRDESDRDGMRIVVELKRDAMADVVLNQLYRYTPLQTSFGCNMVALN-GGRPELLNLKDL 360

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------- 412
           ++ ++  R EV+ RR+ F ++    R  +L GL IA  NIDE+I +IR            
Sbjct: 361 IQAFIDFREEVVSRRTKFLLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREAL 420

Query: 413 ---------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                 +      + L+E Q  AIL+LRL+ L  L   ++  EL
Sbjct: 421 MSRDWPAADIAPLIALVDDPRHRVADDGTYRLSEAQARAILDLRLQRLTALGRDEVGDEL 480

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L  E      +L S  +    +  E+ EV+  ++             E+   D     
Sbjct: 481 KQLADEIADYLDILRSRARILGIVKAELAEVRAEYATPRKT--------EIQDWDSNVED 532

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+I+          +      S +  ++ D +     A+T   +
Sbjct: 533 EDLIQREDMVVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPV 592

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN-QDIVTAFVYDSTC------KL 614
           L  S+ G+AY      L   +    G+A+  ++ L+   + I T               +
Sbjct: 593 LFFSSQGQAYKEKVWRLPLAAPNARGKALVNILPLDQAGERITTIMPLPEDEASWETLDV 652

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  ++ GN    + S+ +   R GK  +K+   + +  V   T  D V +     + + F
Sbjct: 653 MFATASGNVRRNKLSDFVQVNRNGKIAMKLDEGDHIVHVEICTEADDVLLTTAAGQCIRF 712

Query: 674 SIDQIPE-MSR-GKGVRLQSYKDGGI---------------------------------- 697
            +  +     R   GVR  +                                        
Sbjct: 713 PVTDVRVFKGRDSTGVRGINLGKDDRVISMTILRHFEATPEERQAYLRRANADRRATGEA 772

Query: 698 SDVICFKICEGLT---------------------WIDSAGRSYNRSENDLLGWLGKRGGV 736
            D+      +G                        +  + R + +  +     +  RGG 
Sbjct: 773 VDLPTAPEADGEETTASIDLGQERYIDMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGK 832

Query: 737 GSLVPKGFPRSGKFLSS 753
           G    +   R+G  ++S
Sbjct: 833 GIKAMEVNARNGHLVAS 849



 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVT-GDHVA 662
           +  +   +L +S +G        E   + R  KG   ++V++    +     V   D + 
Sbjct: 800 MGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVNARNGHLVASFPVEPSDQIM 859

Query: 663 VVGENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDV 700
           +V    +L+   +D I  + R  +GV + +  KD  +  V
Sbjct: 860 LVTNGGQLIRVPVDDIRIVGRASQGVTVFNTAKDERVVSV 899



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/240 (8%), Positives = 51/240 (21%), Gaps = 62/240 (25%)

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--- 630
            +    L          ++ + L+    IV   +      +L+ ++ G       ++   
Sbjct: 660 NVRRNKLSDFVQVNRNGKIAMKLDEGDHIVHVEICTEADDVLLTTAAGQCIRFPVTDVRV 719

Query: 631 IIANTRKGKTFLKVSSEEK------------------------------------MKLVV 654
                  G   + +  +++                                    +    
Sbjct: 720 FKGRDSTGVRGINLGKDDRVISMTILRHFEATPEERQAYLRRANADRRATGEAVDLPTAP 779

Query: 655 KVTGDH---------------------VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY 692
           +  G+                      V  + E       S  +     RG KG++    
Sbjct: 780 EADGEETTASIDLGQERYIDMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEV 839

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  V  F +      +                 +  R   G  V     +  + +S
Sbjct: 840 NARNGHLVASFPVEPSDQIMLVTNGGQLIRVPVDDIRIVGRASQGVTVFN-TAKDERVVS 898


>gi|315586626|gb|ADU41007.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Helicobacter pylori
           35A]
          Length = 828

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/767 (33%), Positives = 415/767 (54%), Gaps = 31/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNLINETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++K+LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLENPNAGLDKILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLEREKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
           KE FS      +RRT   E   A +    + +I  EP+ V +S +G+             
Sbjct: 478 KEQFS-----SQRRTEIQE---AYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  + +  E D ++    A+T D +L ++  G+ Y L    +        G+AI  
Sbjct: 530 RGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEE 648
           LI L  ++ I+       +     L   +  G       SE  +N    G   + +   +
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGD 649

Query: 649 KMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++     V  +  H+ +       + F ++ + E+ R  +GV      +           
Sbjct: 650 ELVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVIG 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +G   +  +     +           RGG G +  K   ++G  +S
Sbjct: 710 DDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 7/143 (4%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G     P  ++         +  +    ++  +    + D   KLL VS  G
Sbjct: 663 HLLIASYFGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVIGDDGNKLLSVSENG 722

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSID 676
                        +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI 
Sbjct: 723 LGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIK 782

Query: 677 QIPEM-SR-GKGVRLQSYKDGGI 697
            I E   R   GV+L    D  +
Sbjct: 783 DIKETIGRNTSGVKLIDTADKVV 805


>gi|326575842|gb|EGE25765.1| DNA gyrase subunit A [Moraxella catarrhalis CO72]
 gi|326576926|gb|EGE26832.1| DNA gyrase subunit A [Moraxella catarrhalis O35E]
          Length = 888

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/827 (28%), Positives = 399/827 (48%), Gaps = 96/827 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G D+   +
Sbjct: 1   MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L++GQGNFG++DGD  AA RYT
Sbjct: 61  LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M ++   +L  +D++ VD+ D Y+     P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  ++P IS ++L+ +I GPDFPTGG I+  R  I+++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGG-IIHGRSGIIDAYRTGKGRLHI 239

Query: 253 RARWCVEEVGR-----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E +G          I+ T+IPYQV K+ LI+ IA+L+ AK+I  + +IRDES +
Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V     R  + ++++ ++F  + +ET F +NM  L     P++M L  ++  ++ H
Sbjct: 300 EGVRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALD-NGQPKLMTLRDLVAAFIRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
           R+EV+ RR+ F +     R  +L+GL IA  NID+I+  I+                   
Sbjct: 359 RQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQS 418

Query: 416 --------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                              +R+ L+ +QV+AIL+++L  L  LE
Sbjct: 419 AGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E   +L E  ++  +L+        +  E+ ++++ F        R+T   +  
Sbjct: 479 QDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDE-----RKTDIVD-- 531

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
            A     ++ +I ++ + + +S  G+         ++ K      SA   KE D ++  L
Sbjct: 532 -ARHDFNREDLIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLL 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY----D 609
              T   IL  +  G+ + L    +       +   +  LI+L  ++ +          D
Sbjct: 591 VTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKD 650

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               +   ++ G    V  S+       G   + ++  + +  V    G+  + +     
Sbjct: 651 ENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEG 710

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQS------------YKDGGIS---------DVICFKIC 706
           K + F    I  MSR  KGVR                 + G            V      
Sbjct: 711 KAIRFKEQSIRAMSRVAKGVRGMRVNLLATIDEEELLDEDGDEISDDFAVSRVVSLVVAP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    + +    + +           RGG G +  K   R+G+ + +
Sbjct: 771 KQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKA 817



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 5/116 (4%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKV 656
            +V+  V     ++L     G        +     R GK  + + + E+    +K +   
Sbjct: 762 RVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAVT 821

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             + V ++ +   L+   + QI    R  +GV+L    D  +   +     +    
Sbjct: 822 GEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVGMACVEHDDDEI 877


>gi|317509460|ref|ZP_07967078.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974]
 gi|316252289|gb|EFV11741.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974]
          Length = 826

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/767 (28%), Positives = 365/767 (47%), Gaps = 22/767 (2%)

Query: 6   ISNSNT--LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++         + ++ V L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI+HAM +
Sbjct: 1   MTEPTDTSPPRDRIEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAMQD 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      + KSAR V E +G  HPHGD ++YD+LVR+AQP+  RYPLI GQGNFG+   
Sbjct: 61  QGFRPDRGYVKSARPVSETMGNYHPHGDSAIYDALVRMAQPWSLRYPLIDGQGNFGSRGN 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+  +A  +++ +D + VDF   Y+ +  EP V P++ PNLL NG+ GI
Sbjct: 121 DGAAAMRYTEARLAPLALEMVRDIDAETVDFVPNYDGKTEEPSVLPARIPNLLVNGSGGI 180

Query: 184 AVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+ +A          +   ++E + E + GPDFPT G ++   + I
Sbjct: 181 AVGMATNIPPHNLREVADAVFWALEHHDADEATTLEAVKEIVKGPDFPTAG-LIVGTDGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG  R+R    +EE   G   +V+TE+PYQV    +I  IAE +   +I  + 
Sbjct: 240 ADAYTTGRGSIRMRGVVEIEEDSGGRTILVITELPYQVNPDNMILAIAEQVRDGKIAGIA 299

Query: 300 DIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            I DE S      ++    R     +++ +++  S ++T F  NM  +    VP+ + LD
Sbjct: 300 QIDDESSDRIGMRIVVTLKRDAVARVVLNNLYKHSQLQTNFGANMLAIVD-GVPRTLRLD 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM- 417
            I++ ++AH+ EV+ RR+ + ++  + R  IL+GL+ A   +DE+IA+IR          
Sbjct: 359 QIIRLYVAHQIEVIVRRTQYLLRKAEERAHILRGLVKALDALDEVIALIRASASADEARV 418

Query: 418 --VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             +    + E Q  AIL ++L  L  LE  +I  EL  +  E      +L   ++Q   +
Sbjct: 419 GLMELLDVDEIQARAILAMQLGRLAALERQKIFDELAEIEEEIADYKDILAKPERQRAIV 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E++E+ +                       A     +   E      +     RS K 
Sbjct: 479 RDELKEIVDKHGDERRTRIIAAEGDVRDEDLIAQEDVVVTITETGYAKRTKTELYRSQKR 538

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLL 593
               +     K+ D +       T D IL  +T G+ Y + A  L        G+ +  L
Sbjct: 539 GGKGVQGAALKQDDIVAHFFVCSTHDWILFFTTRGRVYRIKAYELPDMNRAARGQHVANL 598

Query: 594 IDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + L   + I        Y+    L++ + +G       +E  +N   G   + +  ++++
Sbjct: 599 LALQTEEKIAQVIHLRTYEDAPYLVLATKRGLTKKSRLTEFDSNRSGGIVAVNLKDDDEL 658

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
                 +  D + +V E+ + + F  +   +  M R   GV    + +      +   + 
Sbjct: 659 VGAALCSADDDLLLVSEHGQSIRFHANDEQLRPMGRATSGVLGMRFNEDDQLLAMNV-VR 717

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +G   + +    Y +  +        RGG G L  +   R G  + +
Sbjct: 718 DGAYLLVATSGGYAKRTDLGEYPAQGRGGKGVLTVQYDRRRGGLVGA 764



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 6/159 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
               D +LL+S  G++    A +      G   +  L +  N +  ++   V      LL
Sbjct: 664 CSADDDLLLVSEHGQSIRFHANDEQLRPMGRATSGVLGMRFNEDDQLLAMNVVRDGAYLL 723

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLL 671
           V +S G A   +  E  A  R GK  L V  + +   +   V V  D  +  +     ++
Sbjct: 724 VATSGGYAKRTDLGEYPAQGRGGKGVLTVQYDRRRGGLVGAVIVDDDTELYAITSGGGVI 783

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             +  Q+    R  KGVRL +  +G     +     +  
Sbjct: 784 RTAARQVRRAGRQTKGVRLMNLAEGDRLIAVARNDEDSA 822



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 2/136 (1%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
           N   +R +   +  +  + F E D L           +L+ ++ G A     G   +   
Sbjct: 685 NDEQLRPMGRATSGVLGMRFNEDDQLLAMNVVRDGAYLLVATSGGYAKRTDLGEYPAQGR 744

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLK 643
            G+ +  +        +V A + D   +L  ++S G        ++    R  KG   + 
Sbjct: 745 GGKGVLTVQYDRRRGGLVGAVIVDDDTELYAITSGGGVIRTAARQVRRAGRQTKGVRLMN 804

Query: 644 VSSEEKMKLVVKVTGD 659
           ++  +++  V +   D
Sbjct: 805 LAEGDRLIAVARNDED 820


>gi|154147908|ref|YP_001406795.1| DNA gyrase subunit A [Campylobacter hominis ATCC BAA-381]
 gi|153803917|gb|ABS50924.1| DNA gyrase, A subunit [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/800 (30%), Positives = 401/800 (50%), Gaps = 59/800 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+  
Sbjct: 2   ENLFENQDIVEVDVEDSIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVSS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R P + GQGNFG+IDGDSAAA
Sbjct: 62  KSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPAVDGQGNFGSIDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT +AE +L+ +D+D VDF   Y+E  +EP V P++ PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEARMTPLAEELLKDLDKDTVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H++ E+ +  L L+D+   S+E+++  I GPDFPTGG ++  ++ I+++YR GRG
Sbjct: 182 TNIPPHSLNELVDGLLLLLDDKNASLEQIMTKIKGPDFPTGG-VIFGKKGIIDAYRTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA+  + E       I++ E+PYQ  K+RL+E+IA L+  K I  + ++RDES  +
Sbjct: 241 RVKIRAKTHI-EQKSNKDIIIIDELPYQTNKARLVEQIATLVKDKSIDGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R    ++++ ++F  + ME  F + + +    + P++  L  +LK +L HR
Sbjct: 300 GIRVVIELKRDAMSEIVLNNLFKQTTMEATFGV-IMLAIDNKEPKIFTLIELLKLFLNHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTE 425
           + V+ RR+ F +Q    R  IL+GL IA  NIDE+I +I+           +V++FSL+E
Sbjct: 359 KTVIIRRTIFDLQKARARAHILEGLKIALDNIDEVIELIKTSADTNVAREGLVNQFSLSE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL+++L  L  LE  +I +EL  +LAE E++D++L S       I  E+ E+K  
Sbjct: 419 IQANAILDMKLNRLTGLEREKIDNELKEILAEIERLDAILKSETLIEQIIKDELIEIKNK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+                          +       +           K       A+  
Sbjct: 479 FNCPRITEIVDDYDDIEIEDLIPNENMIVTITHRGYIKRVPSKTYEKQKRGGKGKVAITT 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
            + D ++    +   D ++ ++  G+ Y L    +        G+A+  LIDL  ++ I+
Sbjct: 539 YDDDFIEQFFTSDAHDTLMFVTNHGQLYWLKVYKIPEGSRTAKGKAVVNLIDLQADEKIM 598

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--- 657
                  +++   L   +  G       SE       G   +K+  ++++   +      
Sbjct: 599 AIIPTTDFNNNKSLCFFTKNGIVKRTNLSEYQNIRSTGIKAIKLDDDDEVVTALIAERDI 658

Query: 658 -----------------GDH--------------------------VAVVGENRKLLIFS 674
                            GD                           + VV +    + F 
Sbjct: 659 NENLSNEKDLKSNDEIFGDEDELDSNDEILENENSENENSQEDGTKIIVVTQKGMCIKFM 718

Query: 675 IDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           +  + E+ R  +GV    +K+             +    +  +     +        L K
Sbjct: 719 LSNVREIGRVSRGVTAIKFKEKDDKVVGAAVLQSDEQEILSVSSNGIGKRTAAGEYRLTK 778

Query: 733 RGGVGSLVPKGFPRSGKFLS 752
           RGG G +  K   ++G+ + 
Sbjct: 779 RGGKGVICMKLTKKTGELIG 798



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 10/143 (6%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKL--VVKVTGDHVAV 663
           +   K++VV+ KG       S +    R  +G T +K    ++K+    V++     +  
Sbjct: 700 EDGTKIIVVTQKGMCIKFMLSNVREIGRVSRGVTAIKFKEKDDKVVGAAVLQSDEQEILS 759

Query: 664 VGENRKLLIFSIDQIPEMSRG-KGVRLQSY--KDGGISDVICFKICEGLTWIDSAGRSYN 720
           V  N      +  +     RG KGV       K G +  V+     E L  + ++G+   
Sbjct: 760 VSSNGIGKRTAAGEYRLTKRGGKGVICMKLTKKTGELIGVVIVDENEDLMALTTSGK--M 817

Query: 721 RSENDLLGWLGKRGGVGSLVPKG 743
              +        R   G +V   
Sbjct: 818 IRVDMQSIRKAGRNTSGVIVVNV 840



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSK 620
           +I++++  G        N+         +  +     +  +V A V      ++L VSS 
Sbjct: 704 KIIVVTQKGMCIKFMLSNVREIGRVSRGVTAIKFKEKDDKVVGAAVLQSDEQEILSVSSN 763

Query: 621 GNAFIVEESEIIANTRKGK--TFLKV-SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSID 676
           G        E     R GK    +K+     ++  VV V   + +  +  + K++   + 
Sbjct: 764 GIGKRTAAGEYRLTKRGGKGVICMKLTKKTGELIGVVIVDENEDLMALTTSGKMIRVDMQ 823

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVIC 702
            I +  R   GV + +     +  + C
Sbjct: 824 SIRKAGRNTSGVIVVNVDGDEVVSIAC 850



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 14/155 (9%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVT-GDHVAVVG 665
            +   ++ ++ +G    V         R  KGK  +    ++ ++        D +  V 
Sbjct: 501 PNENMIVTITHRGYIKRVPSKTYEKQKRGGKGKVAITTYDDDFIEQFFTSDAHDTLMFVT 560

Query: 666 ENRKLLIFSIDQIPEMSR-GKG---VRLQSYKDGGISDVICFKIC--EGLTWIDSAGRSY 719
            + +L    + +IPE SR  KG   V L   +       I          +         
Sbjct: 561 NHGQLYWLKVYKIPEGSRTAKGKAVVNLIDLQADEKIMAIIPTTDFNNNKSLCFFTKNGI 620

Query: 720 NRSENDLLGWLGK-RGGVGSLVPKGFPRSGKFLSS 753
            +  N         R   G    K      + +++
Sbjct: 621 VKRTNLSEY--QNIRST-GIKAIKLDD-DDEVVTA 651


>gi|1346235|sp|Q07702|GYRA_MYCTU RecName: Full=DNA gyrase subunit A
 gi|466275|gb|AAA83017.1| gyrase A [Mycobacterium tuberculosis H37Rv]
          Length = 838

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/776 (29%), Positives = 388/776 (50%), Gaps = 39/776 (5%)

Query: 6   ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++++    ++    ++ V +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 1   MTDTTLPPDDSLDRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMF 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YDSLVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 61  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 121 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ +A          + E ++  ++  + GPDFPT G ++   + 
Sbjct: 181 IAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAG-LIVGSQG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + L
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVD-GVPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---K 414
           D +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     +
Sbjct: 359 DQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 419 AGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E+ E+ +          RRT       AD     + +I +E + V I+  G+ +   
Sbjct: 479 VRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKRTK 530

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
                  K     +     K+ D +       T D IL  +T G+ Y   A +L      
Sbjct: 531 TDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRT 590

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y     L++ +  G     + ++  +N   G   
Sbjct: 591 ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVA 650

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGI 697
           + +   +++   V  + GD + +V  N + + FS     +  M R   GV+   +     
Sbjct: 651 VNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             V    + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 711 L-VSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 58/158 (36%), Gaps = 6/158 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
               D +LL+S +G++    A +      G   +    +  N +  +V+  V      LL
Sbjct: 665 CSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLVSLNVVREGTYLL 724

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLL 671
           V +S G A      E     R GK  L V       ++   + V  D  +  V     ++
Sbjct: 725 VATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVI 784

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 785 RTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 44.8 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 5/142 (3%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F   D L           +L+ ++ G A              
Sbjct: 687 DEALRPMGRATSGVQGMRFNIDDRLVSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRG 746

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
           G+ +  ++       +V A + D   +L  V+S G        ++    R  KG   + +
Sbjct: 747 GKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNL 806

Query: 645 SSEEKMKLVVK---VTGDHVAV 663
              + +  + +    +GD  AV
Sbjct: 807 GEGDTLLAIARNAEESGDDNAV 828


>gi|282889967|ref|ZP_06298502.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500160|gb|EFB42444.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 865

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/762 (31%), Positives = 388/762 (50%), Gaps = 32/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E +   ++   +++ YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 6   NEIIVPRNVEDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHR 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+Q +Y +LVR+AQ ++ RYPL+ GQGNFG++DGD  AA RYTE
Sbjct: 66  KCAKISGDTSGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  +  +++ +D++ V+    Y+E   EP VFP+KFPNLL NG+SGIAVGMAT+IP 
Sbjct: 126 ARLTHASVQLMEDLDKNTVEMVPNYDETKKEPTVFPAKFPNLLCNGSSGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A L ++ NP +SI++++  +  PDFPTGG I+     I E++  GRG   +R
Sbjct: 186 HNLNELIQATLLVLQNPAVSIDEIMGVMPAPDFPTGG-IICGYRGIKEAFHTGRGRLLLR 244

Query: 254 A--RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           A  R    E       ++V EIPY V KSRLIE+IA+LI +K I  + D+RDES +D   
Sbjct: 245 AVIRVEENEENPDKQRLIVDEIPYNVNKSRLIEQIADLINSKTITGIADLRDESDKDGMR 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +L    R    ++++  +F  SD++  F  NM  L    +P+VM +  ++  W+ HR EV
Sbjct: 305 ILIELKRGEIVEVILNQLFKYSDLQITFGCNMLALDK-GLPKVMNVKQLIAAWVDHRIEV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQV 428
           + RR+ F +   + R  IL+G L A  ++DE++ +IR  +  +        RF LTE Q 
Sbjct: 364 VRRRTRFELNKAEARAHILEGYLKAIQHMDEVVRVIRASNNREEARDELIQRFDLTERQA 423

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +A+L+L+L  L  LE  +I  E   LL + + + ++L S     + I  E+ E+++    
Sbjct: 424 NAVLDLKLYQLTGLEYEKINEEYRELLQKIDYLRAVLASEAMVRDIIREELLEIQKNH-- 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 R+T       A+     + +I  E + + IS   +I+ +   +        +  
Sbjct: 482 ---RSGRKTQII---AAESEVNMEDLIANESVIITISEDDYIKRMPVDTFREQRRGGQGI 535

Query: 549 DSLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-- 597
             + +            A T D +L+ +  G+ Y L    +       +   L+  L   
Sbjct: 536 AGMHLKREEDAIKGLYVASTHDYLLIFTNLGRCYWLKVWQIPETGRKSKGKPLINLLEDI 595

Query: 598 -HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I T      ++    +L+ + KG     E SE     RKG   L +   +++   
Sbjct: 596 RPDEKIATVLRVSNFEQQAYILMATKKGIVKKTELSEFSHPRRKGIWALDIVEGDEVVTA 655

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             V+    + +   +   + F   ++  M R  +GV+  + KD     V C  +    T 
Sbjct: 656 RLVSDSQQIMLFTYHGMAVRFDQGKVRPMGRTARGVKGVTLKDDTDYVVGCEAVNGTETI 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +  N        RGGVG        R+G  + +
Sbjct: 716 LIVCENGFGKRSNVEDFRQTNRGGVGVRSIITSERNGNVVGA 757



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 5/184 (2%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               + AL   EGD +  A     + +I+L +  G A     G +  
Sbjct: 624 IVKKTELSEFSHPRRKGIWALDIVEGDEVVTARLVSDSQQIMLFTYHGMAVRFDQGKVRP 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---K 639
                  ++ +   +    +V     + T  +L+V   G        +     R G   +
Sbjct: 684 MGRTARGVKGVTLKDDTDYVVGCEAVNGTETILIVCENGFGKRSNVEDFRQTNRGGVGVR 743

Query: 640 TFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
           + +       +   + VT +  + ++    + +  ++  +  M R  +GV+L + K+G  
Sbjct: 744 SIITSERNGNVVGALCVTDEDGMVMMSAQGQTVRITMKDLRVMGRNTQGVKLANLKEGDY 803

Query: 698 SDVI 701
              I
Sbjct: 804 LVAI 807



 Score = 44.8 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 41/111 (36%), Gaps = 3/111 (2%)

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
               + T+ IL++  +G        +       G  ++ +I    N ++V A        
Sbjct: 706 CEAVNGTETILIVCENGFGKRSNVEDFRQTNRGGVGVRSIITSERNGNVVGALCVTDEDG 765

Query: 614 LLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT-GDHV 661
           ++++S++G    +   ++    R   G     +   + +  + K+   D V
Sbjct: 766 MVMMSAQGQTVRITMKDLRVMGRNTQGVKLANLKEGDYLVAIQKLEVSDDV 816


>gi|283768640|ref|ZP_06341552.1| DNA gyrase, A subunit [Bulleidia extructa W1219]
 gi|283105032|gb|EFC06404.1| DNA gyrase, A subunit [Bulleidia extructa W1219]
          Length = 828

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/764 (30%), Positives = 402/764 (52%), Gaps = 31/764 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N     ++    L   +   +L Y++S I  RA+PD+RDG KPV RRI+ AM+EM   
Sbjct: 10  DENNFDPGHITETELSKEIRRDFLEYSMSVIVARALPDVRDGLKPVQRRILFAMNEMNNG 69

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               ++K ARIVG+ +GK HPHGD S+Y +LV +AQ +  R  L+ G GNFG++DGD AA
Sbjct: 70  PDKPYRKCARIVGDTMGKYHPHGDSSIYGALVYMAQNWNMRETLVDGHGNFGSMDGDGAA 129

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM++++  IL+ +++D VD  D Y+ E+ EP+V P++FPNLL NG+SGIAVGM
Sbjct: 130 AMRYTEARMSKISVEILRDLEKDTVDMMDNYDGEEKEPMVLPARFPNLLVNGSSGIAVGM 189

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++  HN++E  +A +A ++NPEIS+ +L++++ GPDFPTGG I+  R  I +++  GR
Sbjct: 190 ATNVAPHNLKETIDAVIAYMENPEISVTELMQFMKGPDFPTGGYIL-GRSGIRKAFETGR 248

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA+   EE+  G   IVV EIPY V K+ L+E+I  L   K I  + D+RDES  
Sbjct: 249 GSIVMRAKTHFEEMANGKMRIVVDEIPYMVNKASLVERIGTLTREKLIDGITDLRDESNM 308

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               V+    + +  ++++  ++ ++ +++ F +N  VL     P++  +  +LK ++  
Sbjct: 309 KGIRVVVELRKDVQAEVVLNQLYRMTALQSNFGVNNVVLFD-GAPRLAGMKELLKGYIDF 367

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLT 424
           + EV+ RR++F ++    R  IL+GL IA   +DE+I  IR     +     ++++F L 
Sbjct: 368 QLEVIRRRTAFELKKAKDRAHILEGLRIAVDGLDEVIHTIRQSKDAQEALINLMNKFPLD 427

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AIL+++ R L  LE  +I++E  +LL +    + +L   ++  + +  E+ E+K 
Sbjct: 428 EIQAKAILDMQFRRLTGLERDKIENEYQDLLLKIADYEDILAHKERVIDIVKNELTEIKA 487

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            +        RR+   +   AD     + +I  E I V +S  G+++             
Sbjct: 488 KYGSP-----RRSEIID---ADAEMEDEDLIPVEDIMVTLSTNGYVKRLTTNTYSVQNRG 539

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  +   + DS++  ++  T D +LL +  G+ + L   N+ +     +   I  L+
Sbjct: 540 GKGIKGMDLNKDDSIESVINMSTHDFLLLFTNKGRVFRLRGFNIPNFSRTSKGIPIINLV 599

Query: 595 DLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +++ ++ +          + T  L  V+ KG       SE     + GK  + ++ ++++
Sbjct: 600 NMDKDEKVKAMVPVKKNDEQTKFLFFVTKKGIVKRTAISEFENIMKNGKKAILLNEDDQL 659

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             V    G   V + G N K +    D++    R   GV+   +   G S V      EG
Sbjct: 660 AFVKPTDGQAEVLIAGANGKAVRILEDKVRPQGRSAHGVKG--FNTDGSSVVGVATTLEG 717

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    +   +  +     L  RG  G    K   ++G  +S
Sbjct: 718 FNVLTVTEKGIGKVSSIASFRLTNRGSKGVKAAKINEKTGDLIS 761


>gi|163814982|ref|ZP_02206369.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759]
 gi|158449665|gb|EDP26660.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759]
          Length = 865

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/749 (29%), Positives = 379/749 (50%), Gaps = 17/749 (2%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+H+M E+        +K ARI
Sbjct: 12  EVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARI 71

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD S+Y++LV+LAQ +  RYPL+ G GNFG++DGD AAA RYTEAR+++
Sbjct: 72  VGDTMGKYHPHGDSSIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSK 131

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++  ++  +++D VDF   ++  + EPVV PS++PNLL NGTSGIAVGMAT+IP HN++E
Sbjct: 132 ISMEMMADINKDTVDFIPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKE 191

Query: 199 ICEAA-----LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
              AA       + ++ E  I++L++ + GPDFPTG  I+  R+ I ++YR GRG  +VR
Sbjct: 192 TIYAAIKIIDNRVNEDRETDIDELMDIVKGPDFPTGAQIL-GRQGINDAYRTGRGKIKVR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A   +E +  G   I+VTE+PY V KS LI+ + +L+  KRI  + DIRDES+ +   V+
Sbjct: 251 AITEIETMTNGKHRIIVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVV 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + ++ ++++  +F  + ++  F   M  L    VP+++ L  +L  +L H+ +V+ 
Sbjct: 311 IELRKDVNANVILNQLFKHTQLQDTFGCIMLALVD-GVPKILNLKDMLTYYLKHQEDVVT 369

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ + +   + R  IL+G LIA  NIDE+I IIRN           + RF L+E Q  A
Sbjct: 370 RRTRYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIERFGLSEAQAGA 429

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RLR+L  LE  +I++E + L A+  +   +L    +    I  E+  + + +    
Sbjct: 430 IVDMRLRALTGLEREKIENEYNELKAKIAEYKEILADENKLLGVIKTELTAIADKYGDER 489

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                  +            +  +   +   +    +   +        +  ++  + D 
Sbjct: 490 RTSITAYSDDITDEELIKREEIVISMTKLGYIKRMPKDTFKVQNRGGKGIKGMNIIDNDI 549

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           +      +T + I+  +  G+ Y +    +        G AI  L+ L  N+ +      
Sbjct: 550 IDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRNARGVAIVNLLQLLPNEKVTAIIPI 609

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665
                  L++ +  G     +        + G   + ++  +++  V   +G+  + +V 
Sbjct: 610 TGFDKKYLMMATKNGIVKKTKIEAFENIRKTGLAAITLNDGDELIEVKATSGENDIFLVT 669

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
                + F+ D + +  R   GVR            +   + +G   +        +   
Sbjct: 670 TKGMCIRFNEDCVRDTGRTSMGVRGIRCDKNDEVIAMQLDV-QGDEILFVTANGMGKRTE 728

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   RGG G    +   ++G  +S+
Sbjct: 729 LSEFAPQMRGGKGVKCYRITEKTGDIVSA 757



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 6/145 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I L++T G         +         ++  I  + N +++   +     ++L V++ G 
Sbjct: 665 IFLVTTKGMCIRFNEDCVRDTGRTSMGVRG-IRCDKNDEVIAMQLDVQGDEILFVTANGM 723

Query: 623 AFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
               E SE     R GK      +   + + +          + ++     ++      I
Sbjct: 724 GKRTELSEFAPQMRGGKGVKCYRITEKTGDIVSAKAVTNDHDIMMMTNEGIMIRMHCSDI 783

Query: 679 PEMSR-GKGVRLQSYKDGGISDVIC 702
             + R   GV+L +   G     + 
Sbjct: 784 TVIGRITSGVKLMNVGSGAFVASVA 808


>gi|161511097|ref|NP_771336.2| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110]
          Length = 909

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/853 (30%), Positives = 403/853 (47%), Gaps = 110/853 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D+          +++ VS+   +++ YL YA+S I  RA+PD RDG KPVHRRI+++
Sbjct: 1   MADDDKPGDQPAQPSDIRPVSIFEEMKKSYLDYAMSVIVARALPDARDGLKPVHRRILYS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E G      + KSAR+VG+VIGK HPHGDQS+YD++VR+AQ F  R PLI GQGNFG+
Sbjct: 61  MNEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AAYRYTEAR+T+ A  +L  +D+D VDF+  Y+  ++EP V P+KFPNLL NG 
Sbjct: 121 VDGDPPAAYRYTEARLTKAALALLADIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A +ALIDNP ++I++L+  + GPDFPTGG+I+  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACVALIDNPALTIDELINIVPGPDFPTGGVIL-GRAGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y LGRG   +R +  +E + +    +++TEIPYQV K+ ++E+IAEL+  K+I  + D
Sbjct: 240 AAYHLGRGSIVMRGKVAIETIRKEREALIITEIPYQVNKATMVERIAELVKEKKIEGIGD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   V+    R    D+++  ++  + ++T F +NM  L     P++M L  +
Sbjct: 300 LRDESDRDGYRVVIELKRDAVADVVLNQLYRFTPLQTSFGVNMVALDS-GRPRIMHLKDL 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L  ++  R  V+ RR+ F +     R  IL GL IA  NIDE+I +IR    P     + 
Sbjct: 359 LAIFVDFRERVVTRRTKFLLAKARDRAHILVGLAIAVANIDEMIRVIRTSPDPTTARDTL 418

Query: 421 F-----------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                          L+  Q  AIL+LRL+ L  L   +I+ EL
Sbjct: 419 MSRDWPARDVEDMLTLIDDPRHRISPDGTIRLSMEQARAILDLRLQRLTALGRDEIRDEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  E      +L S ++    I  E+ EVK  F+       RRT   E          
Sbjct: 479 DKLAGEIADYLDILRSRERVLGIIKTELAEVKAEFATP-----RRTVIMEQEGE---VED 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+++          +      + +  ++ D +     A T   +
Sbjct: 531 EDLIQREDMVVTVSHAGYVKRVPLSAYRAQRRGGKGRAGMQTRDEDFVSRLFVASTHTPV 590

Query: 564 LLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G+ Y      L        G+A+  ++ L   + I T               ++
Sbjct: 591 LFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLEQGERITTIMPLPEDESTWGNLDVM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
             ++ GN    + S+ +   R G   +K+   E +  V   T  D V + G   + + F 
Sbjct: 651 FATTGGNVRRNKLSDFVDVRRSGIIAMKLDENEAIVDVQICTERDDVLLTGAGGQCIRFP 710

Query: 675 IDQIPE-MSRGK-GVRLQSYKDGGISDVICFK---------------------------- 704
           +  +     R   GVR  +  +G     +                               
Sbjct: 711 VTDVRVFTGRTSMGVRGIALGEGDKVISLAILRHVETTSDERSAYLKMRRAVAGEATAEE 770

Query: 705 ------------------------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                                          +  +   Y +  +        RGG G + 
Sbjct: 771 PAADAEAEETSGSFQLAQERYVEMSAAEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVA 830

Query: 741 PKGFPRSGKFLSS 753
                R+G  ++S
Sbjct: 831 MSVNNRNGNLVAS 843



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 16/109 (14%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVG 665
           +   +L VS  G        E     R GK  + +S   +   +     V   D + +V 
Sbjct: 797 AEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVASFPVEDADQIMLVT 856

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +  +L+   ++ I    R                VI F   E    +  
Sbjct: 857 DKGQLIRCPVEGIRIAGRST------------QGVIVFDTAEDEHVVSV 893


>gi|240850765|ref|YP_002972165.1| DNA gyrase subunit A [Bartonella grahamii as4aup]
 gi|240267888|gb|ACS51476.1| DNA gyrase subunit A [Bartonella grahamii as4aup]
          Length = 927

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/849 (30%), Positives = 411/849 (48%), Gaps = 103/849 (12%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++     E +    ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDLTPHPERDVLTGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F  +++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V+E +L  +D+D VDF+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP+I+++K++E I GPDFPTGGII+     +  
Sbjct: 181 GIAVGMATNIPPHNLGEVVDGCIALIDNPDITLDKIIEIIPGPDFPTGGIIL-GLSGVRA 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE+  G   I+V+EIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVEIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    + +  ++++  ++  + ++T F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRDGYRVVIELKKDVVAEVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + +++ R EV+ RR+ + ++    R  +L GL +A  NIDEIIA+IR    P+       
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLM 418

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWPAMDVAPLIKLIDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +      +L S  +    +  E+  ++E F+          +    S    A    
Sbjct: 479 KIGVDIADYLDILASRVRIMCIVKDELSALREEFATPRRTVFGFGSAEMESEDLIAPEDM 538

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            +       +        R+ +      S +  K+ D +     A+T   +L  S+ G  
Sbjct: 539 VVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIV 598

Query: 573 YTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAF 624
           Y      L   + +  G A+  ++ L   + I T               ++  +++G   
Sbjct: 599 YKEKVWRLPLGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVR 658

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-S 682
             + S+ +   R GK  +K+  E+++  V   T  D V +   N + + F +  +     
Sbjct: 659 RNKLSDFVQVNRNGKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVDVRVFAG 718

Query: 683 RGK-GVRLQSYKDG-------------------------------------GISDVICFK 704
           R   GVR  +   G                                      + D++   
Sbjct: 719 RNSVGVRGINLAKGDKVISMTILEHVEATSIERSAYIKRVMNERRAFGADADVEDIVTLD 778

Query: 705 ICEG------------------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV--PKGF 744
             +G                     +  +   Y +  +     +  RGG G     P   
Sbjct: 779 EEDGGAETELTDERYAELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKT 838

Query: 745 PRSGKFLSS 753
              GK +++
Sbjct: 839 AEIGKLVAA 847



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              LL VS  G        E   + R GK        K +   K+     V   D + +V
Sbjct: 800 EQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQDQIMLV 859

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLT 710
            +  +L+   ++ I    R  KGV + +   G  +  V      E  T
Sbjct: 860 SDGGQLIRVPVEGIRTAGRSTKGVTIFNTAKGERVVSVERISEPEDDT 907


>gi|158336251|ref|YP_001517425.1| DNA gyrase subunit A [Acaryochloris marina MBIC11017]
 gi|158306492|gb|ABW28109.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
          Length = 871

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/796 (29%), Positives = 378/796 (47%), Gaps = 58/796 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S+   ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MTFSSDPAQDRIILTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI+G GNFG+ID D 
Sbjct: 61  LTPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLINGHGNFGSIDNDP 120

Query: 126 AAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE R+  +  + +L  ++++ VDF D ++    EP+V P++ P LL NG+SGIA
Sbjct: 121 PAAMRYTECRLQALSTDSLLPDIEQETVDFGDNFDGSQQEPLVLPARIPQLLINGSSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALI NPEI+  +L++ I GPDFPTGG I+     I E+Y 
Sbjct: 181 VGMATNIPPHNLGEVIDGLVALIHNPEITDLELMKIIPGPDFPTGGRIL-GTAGIREAYT 239

Query: 245 LGRGGFRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            GRG   +R    +E +          I++TE+P+Q  K+ LIE+IAE +  KR+  + D
Sbjct: 240 TGRGSITMRGVAEIETLEQSGRPDREAIIITELPFQTNKAALIERIAENVNDKRLEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  D   ++    R   P +++ +++  + ++T F  NM  L  G  PQ++ L   
Sbjct: 300 IRDESDRDGMRIVIELKRDAYPQVVLNNLYKQTPIQTNFGANMLALV-GGDPQLLTLRQF 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L  +L  R + + RR+ F+++    R  +L+GLLIA  N+D +I +IR        +  +
Sbjct: 359 LSVFLEFREDAILRRTRFQLRKAQERDHLLQGLLIALDNLDAVIQLIRQAADSAVARQEL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  F L++ Q DAIL ++LR L  LE  +I+ E  +L      ++ +L   ++    I  
Sbjct: 419 MDGFGLSDTQADAILQMQLRRLTALEAEKIEREHQDLQERIADLEDILARRERVLEIIET 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K  F+                    A  Q  ++  E   V         +    +
Sbjct: 479 EVTELKTKFASPRRTLIEANLADLDDIDLIANDQAVILVTEQGYVKRMPVDTFNAQSRAT 538

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
              +    KE D+++        D +L  S  G  Y L A  +   S    G  +  L+ 
Sbjct: 539 RGRAGAKIKEDDAVEHFFGCCDHDSVLFFSDRGVVYCLRAYQIPVSSRTARGVPLVQLLP 598

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +   + I +      +     L+++++ G       +        G   + +   + ++ 
Sbjct: 599 IPREEKITSVIPVSEFSEDEYLVMMTAGGFIKKTALAAFSNIRANGLIAISLEEGDLLRW 658

Query: 653 VVKV-TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGI---SDVICFKI 705
           V      D + +       + F  D  Q+  + R  +GVR    ++G      D++   +
Sbjct: 659 VRLTRAEDSIVIGSRRGMSIHFRADHQQLRPLGRATRGVRAMRLREGDEFIGMDILSSAV 718

Query: 706 CE-----------------------------------GLTWIDSAGRSYNRSENDLLGWL 730
            E                                   G   +      + +        L
Sbjct: 719 VETLGNATDADDEETDDPDVLVEDDGNEEESETVEQPGPWVLVITTNGFGKRVPVAQFRL 778

Query: 731 GKRGGVGSLVPKGFPR 746
             R G G    K F +
Sbjct: 779 QNRAGKGVTATK-FKK 793



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFL-----KVSSEEKMKLVVKVT-GDHVAVVGEN 667
           +LV+++ G    V  ++     R GK        K+ + +++  +  V   D + +V   
Sbjct: 759 VLVITTNGFGKRVPVAQFRLQNRAGKGVTATKFKKLKTPDQLAALRIVNAEDELMLVTSR 818

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
             ++  ++  I   SR   GVR+Q   +      +     E L+
Sbjct: 819 GIVIRQAVTDISSQSRAATGVRVQRLDEDDYIAAVALVPPEDLS 862



 Score = 47.5 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             +L+++T+G    +P          G+ +       L     +    + ++  +L++V+
Sbjct: 757 PWVLVITTNGFGKRVPVAQFRLQNRAGKGVTATKFKKLKTPDQLAALRIVNAEDELMLVT 816

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
           S+G       ++I + +R   G    ++  ++ +  V  V  + +
Sbjct: 817 SRGIVIRQAVTDISSQSRAATGVRVQRLDEDDYIAAVALVPPEDL 861


>gi|157164331|ref|YP_001466491.1| DNA gyrase subunit A [Campylobacter concisus 13826]
 gi|112800669|gb|EAT98013.1| DNA gyrase, A subunit [Campylobacter concisus 13826]
          Length = 873

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/802 (32%), Positives = 412/802 (51%), Gaps = 58/802 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + +++ +V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM  +G
Sbjct: 1   MKDNLLELTQDIASVDIEDSIKNSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMDNLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +   +A+ KSARIVGEVIGK HPHGD +VYD+LVR+AQ F  RYP++ GQGNFG+IDGDS
Sbjct: 61  VGSRSAYMKSARIVGEVIGKYHPHGDTAVYDALVRMAQKFSMRYPVVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT + E +L+ +D+D VDF   Y++ + EP V PS+ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTMLTEELLKDIDKDTVDFVPNYDDREVEPDVLPSRVPNLLLNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H++ E+ +  L L++N E ++E+++E+I GPDFPTGG I+  ++ I+E+YR 
Sbjct: 181 GMATNIPPHSLDELIDGLLLLLENKEATLEEVMEFIKGPDFPTGG-IIFGKKGIIEAYRT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RA+  + E       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES
Sbjct: 240 GRGRVKLRAKTHI-EKKPNKDVIVIDELPYQTNKARLIEQIAELVKDKQIDGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   V+    R    D+++ ++F  + ME+ F + M  ++  + P+V  L  +LK +L
Sbjct: 299 DKDGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAIN-NKEPKVFNLIELLKLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ V+ RR+ F ++    R  IL+GL IA  NIDE+I +IRN       +  ++S+F+
Sbjct: 358 NHRKTVIIRRTIFELEKARARAHILEGLKIALDNIDEVIELIRNSADTAVAREGLMSKFN 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL++RL  L  LE  ++++EL  L+AE  ++D +L S     N I  E+ E+
Sbjct: 418 LSELQANAILDMRLSKLTGLEREKLEAELAELMAEIARLDEILKSETLLENLIKEELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K  F                           +       +           K       A
Sbjct: 478 KNKFKVPRVTEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKVA 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
           +   + D ++    ++T D ++ ++  G+ Y L    +        G+A+  LI L  ++
Sbjct: 538 VTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLIQLQPDE 597

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
            I        +D +  L   +  G       SE       G   + +   +++   +   
Sbjct: 598 KIKAIIPTTDFDESKSLAFFTKNGIVKRTNLSEFKNIRSVGVRAISLDENDELVTALIAQ 657

Query: 657 ------------------------------------------TGDH--VAVVGENRKLLI 672
                                                     +GD   + VV +    L 
Sbjct: 658 TYDDMPVTDPENELSVESEVLEIEEIQNEIDEDSANAEEDTNSGDETMLFVVTKKGMCLK 717

Query: 673 FSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           F I ++ +M R  +GV    +K+ G                +  + +   +        L
Sbjct: 718 FKISKVRQMGRTARGVTGIKFKEPGDEVVGAAVIESNDQEILSISQKGIGKRTTADEYRL 777

Query: 731 GKRGGVGSLVPKGFPRSGKFLS 752
             RGG G +  K   R+G  + 
Sbjct: 778 TNRGGKGVICMKLTSRTGDLVG 799



 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 44/129 (34%), Gaps = 5/129 (3%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSK 620
            + +++  G         +         +  +       ++V  A +  +  ++L +S K
Sbjct: 705 MLFVVTKKGMCLKFKISKVRQMGRTARGVTGIKFKEPGDEVVGAAVIESNDQEILSISQK 764

Query: 621 GNAFIVEESEIIANTRKGK--TFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G        E     R GK    +K+   + + + +V+      +  +  + K++   + 
Sbjct: 765 GIGKRTTADEYRLTNRGGKGVICMKLTSRTGDLVGVVMVDEEQDLMALTSSGKMIRVDMQ 824

Query: 677 QIPEMSRGK 685
            I +  R  
Sbjct: 825 SIRKAGRNT 833


>gi|170742567|ref|YP_001771222.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46]
 gi|168196841|gb|ACA18788.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46]
          Length = 914

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/847 (29%), Positives = 398/847 (46%), Gaps = 114/847 (13%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                ++K VS+   +   YL YA+S I  RA+PD RDG KPVHRRI+++M E G     
Sbjct: 12  PPPASDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYENGYLPER 71

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+G+ HPHGDQS+YD+LVR+AQ F  R  L+ GQGNFG+IDGD  AA R
Sbjct: 72  KYVKSARIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRLMLVDGQGNFGSIDGDPPAAMR 131

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+ + A  +L+ +D++ VDF   Y+E   EP V P++FPNLL NG  GIAVGMAT+
Sbjct: 132 YTESRLAKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGAGGIAVGMATN 191

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ E  +ALID+P ++IE L E I GPDFPTGG I+  R     +Y  GRG  
Sbjct: 192 IPPHNLGEVIEGCIALIDDPALTIEGLNEIIPGPDFPTGGQIL-GRAGTRAAYMTGRGSV 250

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  VEE+ +    +V TEIPYQV K+ L+EKIAEL+  KRI  + D+RDES  D  
Sbjct: 251 IMRAKSHVEEIRKEREALVFTEIPYQVNKASLVEKIAELVRDKRIEGVSDLRDESDRDGM 310

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    D+++  ++  + ++T F  NM  L+ G  P+++ L  +++ ++  R E
Sbjct: 311 RIVVELKRDAMADVVLNQLYRYTPLQTSFGCNMVALN-GGRPELLNLKDLIQAFIDFREE 369

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------------ 412
           V+ RR+ F ++    R  +L GL IA  NIDE+I +IR                      
Sbjct: 370 VVSRRTKFLLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALMARDWPAVDI 429

Query: 413 -----------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                       +      + L++ Q  AIL+LRL+ L  L   ++  EL  L  E    
Sbjct: 430 APLIALVDDPRHRVADDGTYRLSDAQARAILDLRLQRLTALGRDEVGDELKQLADEIADY 489

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L S  +    +  E+ EV+  F+       RRT   +          + +I++E + 
Sbjct: 490 LDILRSRARILGIVKAELAEVRAEFATP-----RRTEIQDWD---STVEDEDLIQREDMV 541

Query: 522 VVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +S+ G+I+          +      S +  ++ D +     A+T   +L  S+ G+AY
Sbjct: 542 VTVSHAGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAY 601

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHN-QDIVTAFVYDSTC------KLLVVSSKGNAF 624
                 L   +    G+A+  ++ L+ + + I T               ++  ++ G+  
Sbjct: 602 KEKVWRLPLAAPNARGKALVNILPLDTSGERITTIMPLPEDEASWETLDVMFATASGHVR 661

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MS 682
             + S+ +   R GK  +K+   + +  V   T  D V +     + + F +  +     
Sbjct: 662 RNKLSDFVQVNRNGKIAMKLDEGDHIVHVEICTEADDVLLTTAAGQCIRFPVTDVRVFKG 721

Query: 683 R-GKGVRLQSYKDGGISD------------------------------------------ 699
           R   GVR  +   G                                              
Sbjct: 722 RDSTGVRGINLGSGDRVISMTILRHFEATPEERQAYLRRANADRRATGEAIELPATPEAD 781

Query: 700 ----VICFKICEGLTW---------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                    + +             +  + R + +  +     +  RGG G    +   R
Sbjct: 782 GEETAASIDLDQERYIAMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVNTR 841

Query: 747 SGKFLSS 753
           +G  ++S
Sbjct: 842 NGHLVAS 848



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 6/102 (5%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDH 660
             +  +   +L +S +G        E   + R GK      +   +   +      T D 
Sbjct: 797 IAMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVNTRNGHLVASFPVETSDQ 856

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDV 700
           + +V    +L+   +D I  + R  +GV + +  KD  +  V
Sbjct: 857 IMLVTNGGQLIRVPVDDIRIVGRASQGVTVFNTAKDERVVSV 898



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 70/280 (25%), Gaps = 32/280 (11%)

Query: 493 GRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           G R TT   +   + +      M       V  +       +  +     A+   EGD +
Sbjct: 630 GERITTIMPLPEDEASWETLDVMFATASGHVRRNKLSDFVQVNRN--GKIAMKLDEGDHI 687

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                    D +LL +  G+    P  ++   +G        I+L     +++  +    
Sbjct: 688 VHVEICTEADDVLLTTAAGQCIRFPVTDVRVFKGRDSTGVRGINLGSGDRVISMTILRHF 747

Query: 612 CKLLVVS---SKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGDH----- 660
                 +    +               R     +++      +  +    +  D      
Sbjct: 748 E----ATPEERQAYLRRANAD-----RRATGEAIELPATPEADGEETAASIDLDQERYIA 798

Query: 661 -------VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWI 712
                  V  + E       S  +     RG KG++           V  F +      +
Sbjct: 799 MGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVNTRNGHLVASFPVETSDQIM 858

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                            +  R   G  V     +  + +S
Sbjct: 859 LVTNGGQLIRVPVDDIRIVGRASQGVTVFN-TAKDERVVS 897


>gi|317182015|dbj|BAJ59799.1| DNA gyrase subunit A [Helicobacter pylori F57]
          Length = 828

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/767 (33%), Positives = 414/767 (53%), Gaps = 31/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNLINETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
           KE FS      +RRT   E   A +    + +I  EP+ V +S +G+             
Sbjct: 478 KEQFS-----SQRRTEIQE---AYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  + +  E D ++    A+T D +L ++  G+ Y L    +        G+AI  
Sbjct: 530 RGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEE 648
           LI L  ++ I+       +     L   +  G       SE  +N    G   + +   +
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDKGD 649

Query: 649 KMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++     V  +  H+ +       + F ++ + E+ R  +GV      +           
Sbjct: 650 ELVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVIS 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +G   +  +     +           RGG G +  K   ++G  +S
Sbjct: 710 DDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756



 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 7/143 (4%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G     P  ++         +  +    ++  +    + D   KLL VS  G
Sbjct: 663 HLLIASYFGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISDDGNKLLSVSENG 722

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSID 676
                        +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI 
Sbjct: 723 LGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIK 782

Query: 677 QIPEM-SR-GKGVRLQSYKDGGI 697
            I E   R   GV+L    D  +
Sbjct: 783 DIKETIGRNTSGVKLIDTADKVV 805


>gi|213962139|ref|ZP_03390403.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno]
 gi|213955145|gb|EEB66463.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno]
          Length = 837

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/770 (30%), Positives = 405/770 (52%), Gaps = 43/770 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M +MG+     +KK
Sbjct: 5   EKLIPVDISEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMFDMGVLSNRPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVG+V+GK HPHGD +VYD++VR+AQ +  RY L+ GQGNFG++ GD  AA RYTEA
Sbjct: 65  SAAIVGDVLGKYHPHGDTAVYDTMVRMAQEWSLRYRLVDGQGNFGSMGGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD + TY++   EP V P++ PNLL NG++GIAVGMAT++  H
Sbjct: 125 RMRKLSEDMLIDIDKETVDHQLTYDDSREEPTVLPTRIPNLLVNGSAGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A I+N +I I++L++YI  PDFPTGG I+   E + E+++ GRG   VRA
Sbjct: 185 NLSEVIDGTIAYINNNDIEIDELIKYIKAPDFPTGG-IIYGYEGVKEAFKTGRGRVIVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   +EV  G  CIVVTE+PYQV  S L++K ++L+   ++  + D+RDESA     +++
Sbjct: 244 KAEFQEVR-GKECIVVTEVPYQVDTSILLKKTSDLVKEGKLEGITDVRDESARGKIRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  ++++T F +N   L     P+ + L  ++  ++ HR EV++R
Sbjct: 303 ILKRDAVPNVVLNNLFKHTELQTSFSINNIALVK-GRPEQLNLKDLIYHFVEHRHEVVYR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R+ IL+G +        + + I IIR  DKPK  +++ F LT+ Q +AI
Sbjct: 362 RTDYELRKAKERIHILEGFMKVMATENTMGKAIEIIRFHDKPKEDLIAEFDLTDIQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L LR + K    Q K E +  LAE   ++ +L   +++   I  E+ E+KE +  +  
Sbjct: 422 LALALRRINKALILQTKEEYEQKLAEIRDLEDILARKERRTEIIKEELLEIKEKYGDA-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+T      A      + MI  + + + IS+ G+I+              V   A 
Sbjct: 480 ---RRSTI---EYAGGEFSVEDMIPDDKMVITISHAGYIKRTSLSEYKIQSRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             ++ D L+    +     +L  +  GK + +    +  G    +  A+Q LI++  +  
Sbjct: 534 TTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEGSKTAKGRAVQNLINIEQDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I             Y +   L++ + +G        E     + G   + +   +++   
Sbjct: 594 IKAFVSVQNLKDEEYINNNYLIMATKQGTVKKTLLKEYSRPRQNGINAITIKEGDELIEA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGL 709
              +G   + +  ++ + + F  D++  + R  +GVR       +  +  +I  +     
Sbjct: 654 KLTSGSSQLMLAVKSGRAIRFGEDKVRAVGRNSQGVRGIDLDTENDEVVGMIAIENPREE 713

Query: 710 TWIDSAGRSYNRSENDLL-------GWLGKRGGVGSLVPKGFPRSGKFLS 752
           T +  +   Y +               +  RGG G        ++G+ ++
Sbjct: 714 TVLVVSENGYGKRSYIDEPETHEAVYRITNRGGKGVKTISITEKTGQLVA 763



 Score = 71.0 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 66/499 (13%), Positives = 158/499 (31%), Gaps = 30/499 (6%)

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
               V+ R     +    +  V        +++    + A+  I      ++ +  E+  
Sbjct: 331 NIALVKGRPEQLNLKDLIYHFVEHRHEVVYRRTDYELRKAKERIHILEGFMKVMATENTM 390

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
              I +   +     DL+ E        E    L +  ++   + Q           +  
Sbjct: 391 GKAIEIIRFHDKPKEDLIAEFDLTDIQAEAILALALRRINKALILQTKEEYEQKLAEIRD 450

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE-- 425
             ++L R+        +  +EI +    A  +  E      + +   P      +++   
Sbjct: 451 LEDILARKERRTEIIKEELLEIKEKYGDARRSTIEYAGGEFSVEDMIPDDKMVITISHAG 510

Query: 426 -NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             +  ++   +++S   + +    +   + L       +               +R  + 
Sbjct: 511 YIKRTSLSEYKIQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEI 570

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------ 538
                T  GR       + + DK     ++   +    + +N   + + +          
Sbjct: 571 PEGSKTAKGRAVQNLINIEQDDKIKAFVSVQNLKDEEYINNNYLIMATKQGTVKKTLLKE 630

Query: 539 -------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   ++A+  KEGD L  A     + +++L    G+A       + +   + + ++
Sbjct: 631 YSRPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFGEDKVRAVGRNSQGVR 690

Query: 592 LLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESE-------IIANTRKGKTFL 642
            +     N ++V     ++     +LVVS  G        E            R GK   
Sbjct: 691 GIDLDTENDEVVGMIAIENPREETVLVVSENGYGKRSYIDEPETHEAVYRITNRGGKGVK 750

Query: 643 KVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
            +S  EK   +  +  V  G+ + ++ ++   +  SID +    R  +GV+L + K    
Sbjct: 751 TISITEKTGQLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRISGRATQGVKLINIKGKDS 810

Query: 698 SDVICFKICEGLTWIDSAG 716
              +   + E     D+A 
Sbjct: 811 IAAVTKVMKEDDDETDAAE 829


>gi|159030329|emb|CAO91224.1| gyrA [Microcystis aeruginosa PCC 7806]
          Length = 850

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/786 (31%), Positives = 386/786 (49%), Gaps = 46/786 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +++V    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TAAQDHVVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI+G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +A   +LQ ++ + VDF D ++    EPVV PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLHTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +  +ALI NP+++  +L  YI GPDFPTGG I+  R+ I E+Y  GRG 
Sbjct: 182 NIPPHNLAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHIL-GRDGIQEAYTTGRGS 240

Query: 250 FRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I++TE+PYQ  K+ LIEKIA+L+  ++I  + D+RDES
Sbjct: 241 ITLRGVATIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +++  + +++ F  NM  L     P+++ L   L+ +L
Sbjct: 301 DRDGIRVVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVD-NEPRLLTLREFLRVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
             R EV+ RR+ + ++  + R  +L+GLLIA  ++D +IA+IR+       K  +V  F 
Sbjct: 360 DFRVEVITRRTRYELRKAEERDHLLQGLLIALASLDAVIALIRSAADTASAKEGLVQNFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E   LL +   +  +L   ++  + I  E++++
Sbjct: 420 LSEVQADAILQMQLRRLTALESEKIQQEHGELLTKIGDLQDILAKKERIDSIIEEELQQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K I +        +           A  Q  ++  E   +         S    +   + 
Sbjct: 480 KTIHATPRRSHIEQREGEIAETDLIANEQALILVTEQGYIKRMPVNTFESQNRATRGKAG 539

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
              KE D +   +     D +L  +  G  Y+L A ++ +      G  I  L+++   +
Sbjct: 540 AKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQLLEIPKGE 599

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
            I +      +     L++++ KG       +        G   + +   ++++ V    
Sbjct: 600 KITSVVAVSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQLRWVRLAK 659

Query: 657 TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKICE------ 707
             D V +       + F  D  Q+  + R  KGV+    + G     +     +      
Sbjct: 660 EEDSVIIGSRQGMAIHFKADSQQLRSLGRATKGVKSMKLRSGDELISMDILPSQIVAQIA 719

Query: 708 ---------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                                G   +        +     L  L  R G+G  V K   +
Sbjct: 720 ESNQEETEDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKK 779

Query: 747 SGKFLS 752
           + K  +
Sbjct: 780 NDKLAA 785



 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 5/127 (3%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKV-S 645
           A     +     + +   V ++   +L ++  G    V  + +    R G     +K   
Sbjct: 719 AESNQEETEDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRK 778

Query: 646 SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGKG-VRLQSYKDGGISDVICF 703
             +K+  +  V   +   ++ E   ++  S+D I   SR  G +R+Q   +      +  
Sbjct: 779 KNDKLAALHVVNPNEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVAL 838

Query: 704 KICEGLT 710
                  
Sbjct: 839 VPPSDAE 845


>gi|46446708|ref|YP_008073.1| DNA gyrase subunit A [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400349|emb|CAF23798.1| probable DNA gyrase subunit A [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 856

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/762 (30%), Positives = 374/762 (49%), Gaps = 32/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E + + ++   +++ YL Y++S I  RA+PD RDG KP  RRI++AM ++ L      +
Sbjct: 6   DEVIVSRNVEDEMKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRQLNLGPNGKHR 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ ++ RY L+ GQGNFG++DGD  AA RYTE
Sbjct: 66  KCAKISGDTSGDYHPHGEMVIYPTLVRMAQKWIMRYNLVDGQGNFGSVDGDPPAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  ++  +D+D V+    Y+E   EP VFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 126 ARLTTAAVQLMDDLDKDTVEMVPNYDETKKEPTVFPSKFPNLLCNGSSGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A L L++NP  SI+ +++ + GPDFPTGG+I      I E++  GRG   +R
Sbjct: 186 HNLNELIKATLLLLENPTTSIDDIMKVMPGPDFPTGGMI-CGYRGIKEAFHTGRGKLILR 244

Query: 254 A--RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
              R    E       + + EIPY V KSRLIE IAELI  K I  + D+RDES +D   
Sbjct: 245 GVIRVEENEDNPDRSRLAIDEIPYNVNKSRLIEHIAELINNKTITGISDLRDESDKDGMR 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R   P++++  ++  SD++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 305 IVIELKRGEVPEVIINQLYKFSDLQITFGCNMLALDK-GLPRTMNVKQLISVWIEHRIDV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F +   + R  IL+G L A  ++DE++ +IR            + +F  TE Q 
Sbjct: 364 VRRRTRFELNKAEARAHILEGYLKAIDHLDEVVRLIRASSNRDEARIELIKQFEFTERQA 423

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL+LRL  L  LE  +I  E   LL + + + ++L S       I  E+ ++++    
Sbjct: 424 NAILDLRLYQLTGLERDKINDEYQELLKKIDYLRAVLASEAMVKEIIREELLDIQKHHKS 483

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 R+T       A+     + +I  EP+ + IS   +I+ +  ++        +  
Sbjct: 484 E-----RQTQII---AAETEVNMEDLIANEPVIITISQDDYIKRMPVNTFREQRRGGQGV 535

Query: 549 DSLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH- 598
             +++            A T D +L+ +  G+ Y L    +       +   L+  L   
Sbjct: 536 TGMQLKREEDVIKGLYVATTHDYLLIFTNLGRCYWLKVWQIPETGRKSKGKPLINLLEDI 595

Query: 599 -----NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
                   I     ++    +L+ + +        +E     RKG   L +   +++   
Sbjct: 596 RPEEKIATIQRVSSFEEEACILMATKRAVVKKSLLNEFSNPRRKGIWALDIDEGDELVAA 655

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             V     V +       + F    +  M R  +GV+  + +      V C  +    + 
Sbjct: 656 RLVKPEQQVMLFTHQGMAVRFEESNVRPMGRTARGVKGATLRGENDYIVGCEVVNGDESI 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RGGVG        R+GK + +
Sbjct: 716 LVVCENGFGKRSQVDDFRQTNRGGVGVRSIITSERNGKVIGA 757



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 109/355 (30%), Gaps = 20/355 (5%)

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           + +  + +L     H+ E   +  +   +     +   + ++I     D I       + 
Sbjct: 467 KEIIREELLDIQKHHKSERQTQIIAAETEVNMEDLIANEPVIITISQDDYIKR--MPVNT 524

Query: 413 PKPVMVSRFSLTENQVDAILN-LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
            +        +T  Q+    + ++   +    +Y +           +         K +
Sbjct: 525 FREQRRGGQGVTGMQLKREEDVIKGLYVATTHDYLLIFTNLGRCYWLKVWQIPETGRKSK 584

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              +   + ++            R        +   +  ++A I       V+       
Sbjct: 585 GKPLINLLEDI------------RPEEKIATIQRVSSFEEEACILMATKRAVVKKSLLNE 632

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   + AL   EGD L  A       +++L +  G A      N+         ++
Sbjct: 633 FSNPRRKGIWALDIDEGDELVAARLVKPEQQVMLFTHQGMAVRFEESNVRPMGRTARGVK 692

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEE 648
                  N  IV   V +    +LVV   G     +  +     R G   ++ +      
Sbjct: 693 GATLRGENDYIVGCEVVNGDESILVVCENGFGKRSQVDDFRQTNRGGVGVRSIITSERNG 752

Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           K+   + VT +  + ++    + +  +++ +  M R  +GV+L + K+      I
Sbjct: 753 KVIGALCVTDEDGMVMMSATGQTVRINMNDLRVMGRNTQGVKLANLKENDYLVAI 807



 Score = 44.0 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 68/204 (33%), Gaps = 11/204 (5%)

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            ++    +A +   VK+         RR+  +          +   +++ E   ++ +++
Sbjct: 611 EEEACILMATKRAVVKKSLLNEFSNPRRKGIWALDIDEGDELVAARLVKPEQQVMLFTHQ 670

Query: 528 GWIRSLKSHSVDLSALHFK---------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           G     +  +V       +         E D +      +  + IL++  +G        
Sbjct: 671 GMAVRFEESNVRPMGRTARGVKGATLRGENDYIVGCEVVNGDESILVVCENGFGKRSQVD 730

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK- 637
           +       G  ++ +I    N  ++ A        ++++S+ G    +  +++    R  
Sbjct: 731 DFRQTNRGGVGVRSIITSERNGKVIGALCVTDEDGMVMMSATGQTVRINMNDLRVMGRNT 790

Query: 638 -GKTFLKVSSEEKMKLVVKVTGDH 660
            G     +   + +  + K+ G  
Sbjct: 791 QGVKLANLKENDYLVAIQKLQGSE 814


>gi|15607148|ref|NP_214520.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Rv]
 gi|148659763|ref|YP_001281286.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|167969469|ref|ZP_02551746.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|307086732|ref|ZP_07495845.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012]
 gi|1552559|emb|CAB02427.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|148503915|gb|ABQ71724.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|308363882|gb|EFP52733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012]
          Length = 838

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 226/776 (29%), Positives = 388/776 (50%), Gaps = 39/776 (5%)

Query: 6   ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++++    ++    ++ V +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 1   MTDTTLPPDDSLDRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMF 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YDSLVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 61  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 121 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ +A          + E ++  ++  + GPDFPT G ++   + 
Sbjct: 181 IAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAG-LIVGSQG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + L
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVD-GVPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---K 414
           D +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     +
Sbjct: 359 DQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 419 AGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E+ E+ +          RRT       AD     + +I +E + V I+  G+ +   
Sbjct: 479 VRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKRTK 530

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
                  K     +     K+ D +       T D IL  +T G+ Y   A +L      
Sbjct: 531 TDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRT 590

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y     L++ +  G     + ++  +N   G   
Sbjct: 591 ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVA 650

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGI 697
           + +   +++   V  + GD + +V  N + + FS     +  M R   GV+   +     
Sbjct: 651 VNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +   + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 711 LLSLNV-VREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 6/158 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
               D +LL+S +G++    A +      G   +    +  N +  +++  V      LL
Sbjct: 665 CSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLL 724

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLL 671
           V +S G A      E     R GK  L V       ++   + V  D  +  V     ++
Sbjct: 725 VATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVI 784

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 785 RTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 44.8 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 5/142 (3%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F   D L           +L+ ++ G A              
Sbjct: 687 DEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRG 746

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
           G+ +  ++       +V A + D   +L  V+S G        ++    R  KG   + +
Sbjct: 747 GKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNL 806

Query: 645 SSEEKMKLVVK---VTGDHVAV 663
              + +  + +    +GD  AV
Sbjct: 807 GEGDTLLAIARNAEESGDDNAV 828


>gi|166363186|ref|YP_001655459.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
 gi|166085559|dbj|BAG00267.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
          Length = 850

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 246/786 (31%), Positives = 387/786 (49%), Gaps = 46/786 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +++V    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TAAQDHVVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI+G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +A   +LQ ++ + VDF D ++    EPVV PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLHTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +  +ALI NP+++  +L  YI GPDFPTGG I+  R+ I E+Y  GRG 
Sbjct: 182 NIPPHNLAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHIL-GRDGIQEAYTTGRGS 240

Query: 250 FRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I++TE+PYQ  K+ LIEKIA+L+  ++I  + D+RDES
Sbjct: 241 ITLRGVATIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +++  + +++ F  NM  L     P+++ L   L+ +L
Sbjct: 301 DRDGIRVVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVD-NEPRLLTLREFLRVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
             R EV+ RR+ + ++  + R  IL+GLLIA  ++D +IA+IR+       K  +V  F 
Sbjct: 360 DFRVEVITRRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQNFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E   LLA+   +  +L   ++  + I  E++++
Sbjct: 420 LSEVQADAILQMQLRRLTALESEKIQQEHGELLAKIGDLQDILAKKERIDSIIEEELQQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K I +        +           A  Q  ++  E   +         S    +   + 
Sbjct: 480 KTIHATPRRTHIEQREGEIAETDLIANEQALILVTEQGYIKRMPVNTFESQNRATRGKAG 539

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
              KE D +   +     D +L  +  G  Y+L A ++ +      G  I  L+++   +
Sbjct: 540 AKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQLLEIPKGE 599

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
            I +      +     L++++ KG       +        G   + +   ++++ V    
Sbjct: 600 KITSVVAVSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQLRWVRLAK 659

Query: 657 TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKICE------ 707
             D V +       + F  D  Q+  + R  KGV+    + G     +     +      
Sbjct: 660 EEDSVIIGSRQGMAIHFKADSQQLRSLGRATKGVKSMKLRSGDELISMDILPSQIVAQIA 719

Query: 708 ---------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                                G   +        +     L  L  R G+G  V K   +
Sbjct: 720 ESNEEETEDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKK 779

Query: 747 SGKFLS 752
           + K  +
Sbjct: 780 NDKLAA 785



 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKV-SSEEKMKLVVKVT-GDHVA 662
           V ++   +L ++  G    V  + +    R G     +K     +K+  +  V   +   
Sbjct: 737 VANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKNDKLAALHVVNPHEEFM 796

Query: 663 VVGENRKLLIFSIDQIPEMSRGKG-VRLQSYKDGGISDVICFKICEGLT 710
           ++ E   ++  S+D I   SR  G +R+Q   +      +         
Sbjct: 797 IITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVALVPPSDAE 845


>gi|172039314|ref|YP_001805815.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142]
 gi|171700768|gb|ACB53749.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142]
          Length = 862

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 239/796 (30%), Positives = 387/796 (48%), Gaps = 64/796 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T+ ++ +    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +    +L+ ++ D VDF D ++    EP+V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI NP++S ++L++ I GPDFPTGG I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELIDGTIALIHNPDLSEKELIKIIPGPDFPTGGQIL-GRSGIHDAYMTGRGS 240

Query: 250 FRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I++T++PYQ  K+ LIE+IA+L+  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +I+  + ++  F  NM  L     PQ++ +   L+ +L
Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALV-NGEPQLLTIKDFLQVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  N+D +I +IR        K  +V  F 
Sbjct: 360 DFRVETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQEFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q DAIL ++LR L  LE  +I +E + L  +   +  +L   ++    I  E+ ++
Sbjct: 420 LSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLKDILARRERIEAIIEDELTQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K I +       RRT        D   +   +I  E   ++++ +G+I+ +   +     
Sbjct: 480 KTIHATP-----RRTEIV---HDDGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFEAQQ 531

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +A   K+ D ++  L     D++L  S  G  Y + A  +   S    G  I  
Sbjct: 532 RATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIPSSSRTARGIPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +  ++ I +      +     L++++  G       S        G   + +   ++
Sbjct: 592 MLPIPKDEKITSIVAVSEFREDVFLVMLTRNGYIKKTALSAFSNIRTNGLIAISLGDGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           ++ V      D + +       + F  D  Q+  + R  +GV+    K G     +    
Sbjct: 652 LRWVRLTREEDSIILGTRKGMAIHFQADNQQLRPLGRATRGVKAMKLKKGDELISMDVLP 711

Query: 706 CE-----------------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
            +                             G   +      Y +        L +R G+
Sbjct: 712 AQVTAGIGDAAEDEDVLENETEELTEEETTEGPWILAITNGGYGKRVPISQFRLQRRAGM 771

Query: 737 GSLVPKGFPRSGKFLS 752
           G    K   ++    S
Sbjct: 772 GVRAIKFKSKTDCLAS 787



 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLVVKVT-GDHVAVVGENRK 669
           +L +++ G    V  S+     R G     +K  S+ + +  +  V   D + +V     
Sbjct: 746 ILAITNGGYGKRVPISQFRLQRRAGMGVRAIKFKSKTDCLASLHVVNAEDELMIVSNRGI 805

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSY 692
           ++  ++D I   SR   GVR+Q  
Sbjct: 806 IIRQAVDAISMQSRAATGVRVQRL 829


>gi|297158797|gb|ADI08509.1| DNA gyrase subunit A [Streptomyces bingchenggensis BCW-1]
          Length = 869

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 250/787 (31%), Positives = 402/787 (51%), Gaps = 46/787 (5%)

Query: 1   MGVDNISNSNTLVEE----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           M  +N  N+     +     V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR
Sbjct: 1   MADENTPNTPEDQTQGATLRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   G
Sbjct: 61  VLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNG 120

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+   D AAA RYTE +M  ++  +++ +DED VDF+D Y+  + EP V P++FPNLL
Sbjct: 121 NFGSPGNDPAAAMRYTECKMAPLSMEMIRDIDEDTVDFQDNYDGRNQEPTVLPARFPNLL 180

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGII 232
            NG++GIAVGMAT+IP HN++E+ E A   + NPE + E+    L++ I GPDFPTG  +
Sbjct: 181 INGSAGIAVGMATNIPPHNLREVAEGAQWFLANPEATPEELLDALIDRIKGPDFPTGA-L 239

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
           V  R+ I E+YR GRG   +RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+  
Sbjct: 240 VVGRKGIEEAYRTGRGSITMRAVVEVEEI-QGRQCLVVTELPYQVNPDNLAQKIADLVKE 298

Query: 293 KRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            RI  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L    V
Sbjct: 299 ARIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GV 357

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+ + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D
Sbjct: 358 PRTLSLDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSD 417

Query: 412 KPKPVMVSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
             +           + E Q +AIL ++LR L  LE  +I  E D L A+  + +++L S 
Sbjct: 418 TVEIARGGLMDLLTIDEIQANAILEMQLRRLAALERQKIIQEHDELQAKINEYNAILASP 477

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++Q   I+ E+  + E +        RRT              + +I +E I V IS  G
Sbjct: 478 ERQRQIISEELTAIVEKYGD-----DRRTKLIPFDGDMS---IEDLIAEEDIVVTISRGG 529

Query: 529 WIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +++          K     +     K+ D +     + T   +L  +  G+ Y   A  L
Sbjct: 530 YVKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYEL 589

Query: 581 LS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
                   G+ +  L+    ++ I        Y++   L++ +  G        +  +  
Sbjct: 590 PDAGREARGQHVANLLAFQPDEQIAQILAIRDYEAAPYLVLATKSGLVKKTPLKDYDSPR 649

Query: 636 RKGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KG 686
             G   + +       E+++     V+  D + ++ +  + + F+     +  M R   G
Sbjct: 650 SGGVIAINLRETEDGREDELIGAELVSADDDLLLISKKAQSIRFTATDESLRPMGRATSG 709

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           V+  S+++G     +   +  G     +    Y +  N     +  RGG+G    K    
Sbjct: 710 VKGMSFREGDELLSMNV-VRPGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIVED 768

Query: 747 SGKFLSS 753
            G  + +
Sbjct: 769 RGSLVGA 775


>gi|15839378|ref|NP_334415.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551]
 gi|121635889|ref|YP_976112.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|121635916|ref|YP_976139.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148821197|ref|YP_001285951.1| DNA gyrase subunit A [Mycobacterium tuberculosis F11]
 gi|215405990|ref|ZP_03418171.1| DNA gyrase subunit A [Mycobacterium tuberculosis 02_1987]
 gi|215413860|ref|ZP_03422525.1| DNA gyrase subunit A [Mycobacterium tuberculosis 94_M4241A]
 gi|215448279|ref|ZP_03435031.1| DNA gyrase subunit A [Mycobacterium tuberculosis T85]
 gi|218755722|ref|ZP_03534518.1| DNA gyrase subunit A [Mycobacterium tuberculosis GM 1503]
 gi|224988389|ref|YP_002643056.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254233411|ref|ZP_04926737.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C]
 gi|254366466|ref|ZP_04982510.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem]
 gi|254548934|ref|ZP_05139381.1| DNA gyrase subunit A [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260184859|ref|ZP_05762333.1| DNA gyrase subunit A [Mycobacterium tuberculosis CPHL_A]
 gi|260203143|ref|ZP_05770634.1| DNA gyrase subunit A [Mycobacterium tuberculosis K85]
 gi|289445531|ref|ZP_06435275.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A]
 gi|289572582|ref|ZP_06452809.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85]
 gi|289747776|ref|ZP_06507154.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987]
 gi|289760103|ref|ZP_06519481.1| subunit A gyrA [Mycobacterium tuberculosis T85]
 gi|289764121|ref|ZP_06523499.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503]
 gi|294995614|ref|ZP_06801305.1| DNA gyrase subunit A [Mycobacterium tuberculosis 210]
 gi|298527404|ref|ZP_07014813.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A]
 gi|306778824|ref|ZP_07417161.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002]
 gi|306782612|ref|ZP_07420934.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003]
 gi|306786980|ref|ZP_07425302.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004]
 gi|306791537|ref|ZP_07429839.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005]
 gi|306795600|ref|ZP_07433902.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006]
 gi|306801575|ref|ZP_07438243.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008]
 gi|306805784|ref|ZP_07442452.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007]
 gi|306970180|ref|ZP_07482841.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009]
 gi|13879047|gb|AAK44229.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551]
 gi|121491536|emb|CAL69990.1| DNA gyrase subunit A gyrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|121491563|emb|CAL70020.1| Dna gyrase subunit A gyrA (DNA topoisomerase) [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124603204|gb|EAY61479.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C]
 gi|134151978|gb|EBA44023.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem]
 gi|148719724|gb|ABR04349.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis F11]
 gi|224771502|dbj|BAH24308.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289418489|gb|EFD15690.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A]
 gi|289537013|gb|EFD41591.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85]
 gi|289688304|gb|EFD55792.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987]
 gi|289711627|gb|EFD75643.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503]
 gi|289715667|gb|EFD79679.1| subunit A gyrA [Mycobacterium tuberculosis T85]
 gi|298497198|gb|EFI32492.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A]
 gi|308328161|gb|EFP17012.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002]
 gi|308332535|gb|EFP21386.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003]
 gi|308336278|gb|EFP25129.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004]
 gi|308339882|gb|EFP28733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005]
 gi|308343896|gb|EFP32747.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006]
 gi|308347680|gb|EFP36531.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007]
 gi|308351598|gb|EFP40449.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008]
 gi|308352304|gb|EFP41155.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009]
 gi|323717345|gb|EGB26550.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CDC1551A]
 gi|326905765|gb|EGE52698.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis W-148]
          Length = 838

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 224/776 (28%), Positives = 388/776 (50%), Gaps = 39/776 (5%)

Query: 6   ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++++    ++    ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 1   MTDTTLPPDDSLDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMF 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 61  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 121 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ +A          + E ++  ++  + GPDFPT G ++   + 
Sbjct: 181 IAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAG-LIVGSQG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + L
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVD-GVPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---K 414
           D +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     +
Sbjct: 359 DQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 419 AGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E+ E+ +          RRT       AD     + +I +E + V I+  G+ +   
Sbjct: 479 VRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKRTK 530

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
                  K     +     K+ D +       T D IL  +T G+ Y   A +L      
Sbjct: 531 TDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRT 590

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y     L++ +  G     + ++  +N   G   
Sbjct: 591 ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVA 650

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGI 697
           + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   +     
Sbjct: 651 VNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +   + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 711 LLSLNV-VREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 6/158 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
               D +LL+S +G++    A +      G   +    +  N +  +++  V      LL
Sbjct: 665 CSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLL 724

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLL 671
           V +S G A      E     R GK  L V       ++   + V  D  +  V     ++
Sbjct: 725 VATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVI 784

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 785 RTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 44.8 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 5/142 (3%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F   D L           +L+ ++ G A              
Sbjct: 687 DEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRG 746

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
           G+ +  ++       +V A + D   +L  V+S G        ++    R  KG   + +
Sbjct: 747 GKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNL 806

Query: 645 SSEEKMKLVVK---VTGDHVAV 663
              + +  + +    +GD  AV
Sbjct: 807 GEGDTLLAIARNAEESGDDNAV 828


>gi|126734750|ref|ZP_01750496.1| DNA topoisomerase IV subunit A [Roseobacter sp. CCS2]
 gi|126715305|gb|EBA12170.1| DNA topoisomerase IV subunit A [Roseobacter sp. CCS2]
          Length = 780

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 386/784 (49%), Positives = 526/784 (67%), Gaps = 44/784 (5%)

Query: 6   ISNSNT--LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+ +   L   +V    LR A+ +RYL YALSTI  RA+PD RDG KPVHRRI++AMS 
Sbjct: 1   MSDDSDTGLGPNDVTET-LRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMSR 59

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 60  LRLSPSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 119

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT  AE +L+G+ ED+VDFRD Y+   +EP V P+ FPNLLANG+SGI
Sbjct: 120 DNPAASRYTEARMTAAAEALLEGLSEDSVDFRDNYDGRLTEPAVLPATFPNLLANGSSGI 179

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A L LI  P+   + LL YI GPDFPTGG IVE  E+I E+Y
Sbjct: 180 AVGMATNIPPHNLHELIDACLHLIKTPDARDDTLLNYIPGPDFPTGGTIVEPAENIAEAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+RA+W VE++GRG+W IVVTEIPYQVQKS+LIEK+AE+I  K++PLL D+RD
Sbjct: 240 RTGRGSFRLRAKWEVEDLGRGTWQIVVTEIPYQVQKSKLIEKLAEVIQLKKVPLLADVRD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+D+R+VL P+ +++DP+++M  +F  SD+ETRF LNMNVL  G  P+V  L  +L+ 
Sbjct: 300 ESADDIRVVLEPRAKTVDPEVMMGMLFRNSDLETRFSLNMNVLIDGLTPKVCSLKEVLRA 359

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           +L HRR+VL RRS +R++ ID R+E+L+G +IA+L++D +I IIR +D PK  ++     
Sbjct: 360 FLEHRRDVLVRRSKYRLEKIDHRLEVLEGFIIAFLHLDRVIDIIRYDDDPKKALMIEDWA 419

Query: 423 -------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                    L+E Q +AILN+RLRSLR+LEE ++ +E D L+ E
Sbjct: 420 QDHVRATSEADYRSPIVPGADPEVSLSEVQAEAILNMRLRSLRRLEELELIAERDALMEE 479

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           +  I+ LL S   QW +IA ++RE ++IF + ++ G RRT F E +        +AMIE+
Sbjct: 480 RAGIEDLLESDDLQWAKIAEQLRETRKIFGRDSEGGARRTQFAE-AAEVVEVPLEAMIER 538

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           EPITVV S  GW+R++  H      L FK+GD  +   HA TTD++L+   +G+ YT+ A
Sbjct: 539 EPITVVCSQMGWVRAMTGHIDLTRELKFKDGDGPRFIFHAETTDKLLVFGANGRFYTVGA 598

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            NL  GRG GE ++L+IDL ++ +IV   ++    KLLV S++GN F+V E E++A TR 
Sbjct: 599 ANLPGGRGMGEPLRLMIDLPNDVEIVDFLIHKPGEKLLVASAEGNGFVVPEEEVVAQTRS 658

Query: 638 GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK---- 693
           GK  L V      K+  +V GDHVAVV EN K L+F + ++PEM+RGKGVR+Q YK    
Sbjct: 659 GKQVLNVKDT-IAKVCHRVVGDHVAVVSENAKFLVFEVGELPEMNRGKGVRIQKYKKASG 717

Query: 694 -------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                  DGG+SD+  F   +GL+W  + G    R+E D+  W G R GVG   P GFP+
Sbjct: 718 RQGMLELDGGLSDITTFTWDDGLSW--AMGGGKTRTEPDMTDWKGARAGVGKRPPYGFPK 775

Query: 747 SGKF 750
           + +F
Sbjct: 776 NNRF 779


>gi|294508240|ref|YP_003572298.1| DNA gyrase subunit A [Salinibacter ruber M8]
 gi|294344568|emb|CBH25346.1| DNA gyrase subunit A [Salinibacter ruber M8]
          Length = 949

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 252/816 (30%), Positives = 397/816 (48%), Gaps = 86/816 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  GA +K
Sbjct: 44  DSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGANYK 103

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD+LVR+AQ F  RYPL  GQGNFG++DGDSAAA RYTE
Sbjct: 104 KSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMRYTE 163

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT++AE +L  + ++ VD ++ ++    EP V P+ FPN+L NG  GIAVGMAT IP 
Sbjct: 164 ARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATKIPP 223

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +A ID+P+I I+ L++++  PDFPTGG I+     + E+Y  GRG   +R
Sbjct: 224 HNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGG-IIYGYAGVYEAYHTGRGRVVMR 282

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+   EEV  G   +VVTE+PYQV KSR +E+IA+ +  +RI  + D+RDES  D   ++
Sbjct: 283 AKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLRIV 342

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + +++   ++  S ++  F +NM  L  G  PQV+ L   ++ ++ HR E++ 
Sbjct: 343 IELKQGANAEIVKNQVYKHSRLQDTFGVNMVALV-GGRPQVVTLKDAIRHYVDHRHEIVV 401

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------ 415
           RR+ + +     R  IL+GL +A  ++D +IAIIR+                        
Sbjct: 402 RRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDDD 461

Query: 416 ----------------------------------VMVSRFSLTENQVDAILNLRLRSLRK 441
                                                    LTE Q +AIL LRL  L  
Sbjct: 462 LRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLTG 521

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I  E ++++ +  +   +LNS  ++   I  E+  VKE F        RRT    
Sbjct: 522 LEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDE-----RRTEI-- 574

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKI 553
                   + + +IE++ + V I+N+G  +     +          +     +E D ++ 
Sbjct: 575 DYTGGDDIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEH 634

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDST 611
               H+ D +LL +  G+ + L    +  G    +  +I+ LID++ +  +         
Sbjct: 635 LYVCHSHDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKE 694

Query: 612 ----------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                       +L  + +G                G   +K+   +++       GD+ 
Sbjct: 695 NFEDEAFLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNT 754

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKIC--EGLTWIDSAG 716
           V V     + + F       M R  +GVR      D  +  +I       + L  +  A 
Sbjct: 755 VVVASSGGRAVHFDEGDARPMGRNTRGVRGMELPGDQELVGMISVPPAMHDDLDVLAIAE 814

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +        +  RGG G +      R+G  +S
Sbjct: 815 HGYGKRTALSDYRVQGRGGKGLITLNRTDRTGALVS 850



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 13/259 (5%)

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
                    +         IR++ +I            +               +     
Sbjct: 654 FWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFEDEAFLNSHYVLAATRQ 713

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             V  +        +S+   +  +   EGD L  A      + +++ S+ G+A     G+
Sbjct: 714 GQVKKTALEAYSRPRSN--GIIGIKIDEGDQLIEASLTGGDNTVVVASSGGRAVHFDEGD 771

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANT 635
                 +   ++ + +L  +Q++V              +L ++  G       S+     
Sbjct: 772 ARPMGRNTRGVRGM-ELPGDQELVGMISVPPAMHDDLDVLAIAEHGYGKRTALSDYRVQG 830

Query: 636 RKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
           R GK  + ++  ++   +  +  V GD  + V+ E   ++   + +I  M R  +GV++ 
Sbjct: 831 RGGKGLITLNRTDRTGALVSIKGVLGDEDLMVITEGGIMIRTRVGEISTMGRNTQGVQVI 890

Query: 691 SYKDGG-ISDVICFKICEG 708
             KDG  I+DV      + 
Sbjct: 891 DLKDGDAIADVTRVADTDE 909


>gi|256823912|ref|YP_003147872.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547]
 gi|256687305|gb|ACV05107.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547]
          Length = 875

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 228/774 (29%), Positives = 377/774 (48%), Gaps = 38/774 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +         ++ V L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM + G 
Sbjct: 27  NGPEIPQHGRIEPVDLSSEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGY 86

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               ++ K AR+VG+V+   HPHGD ++YD++VRL+QP+  RYPLI GQGNFG+   D  
Sbjct: 87  RPDRSYNKCARVVGDVMANYHPHGDSAIYDAMVRLSQPWSMRYPLIDGQGNFGSAGDDGP 146

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ + ED VDF   Y+    +P V P++FPNLL NG++GIAVG
Sbjct: 147 AAPRYTECRMQPLAMELVRDITEDTVDFEPNYDGRTMQPTVLPARFPNLLVNGSAGIAVG 206

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVES 242
           MAT IP HN++E+ E    L+DNPE + E+L     + I GPDFPTG  ++  R  I ++
Sbjct: 207 MATQIPPHNLREVAEGCQWLLDNPEATKEELQEKLLQVIKGPDFPTGA-LIMGRSGIEDA 265

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA   VEE+ +G  C+VVTE+PYQV    L  KIAEL+   ++  + D+R
Sbjct: 266 YRTGRGSITMRAVVEVEEI-QGRTCLVVTELPYQVNPDALARKIAELVKTGKLQGIADLR 324

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R     +++ +++  + ++  F  NM  L    VP+ +P++  +
Sbjct: 325 DETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQQNFGANMLALVD-GVPRTLPINAFV 383

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + W+ H+ EV+ RR+ +R++  + ++ IL+GLL A   +DE+IA+IR     +       
Sbjct: 384 RHWVDHQVEVIVRRTRYRLKRAEEQIHILRGLLKALDALDEVIALIRRSPTVEQARDGLM 443

Query: 422 ---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + E Q  AIL+++LR L  LE  +I  E D L A  E ++ +L +  +Q   I+ E
Sbjct: 444 DLLDIDEVQARAILDMQLRRLAALERQKIIDEHDRLQALIEDLEDILATPARQRTIISEE 503

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           +  + E +        RRT       +D     + +I  E + V I+  G+ +       
Sbjct: 504 LAAIVEQYGDE-----RRTEIV---PSDAEVNMEDLIPDENVVVTITRGGYAKRIRVDAY 555

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
              +     +     +  D +       T   +L  +  G+ Y   A  L  G    +  
Sbjct: 556 RSQRRGGKGVRGTTLRADDVVDHFFTTQTHGWLLFFTDAGRVYRARAWELPEGSRDSKGQ 615

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            +  ++    ++ I              L++ +  G       +E  +    G   + + 
Sbjct: 616 HVANIMAFGPDEKIAQVLTIKDYQAAPYLVLATKNGLVKKTRLTEYDSPRSGGLIAVNLR 675

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV- 700
             +++     V+  D + +V    + L F+     I  M R   GV    ++        
Sbjct: 676 EGDELVGAELVSDADDILMVSRKGQSLRFTASDDQIRPMGRATSGVTGMRFRGDDELLAM 735

Query: 701 -ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     E             +        +  RGG+G  V K   + G  + +
Sbjct: 736 RVVPSDAEDAEVFVVFQSGMAKRTAVDQYRVQGRGGLGVKVAKASDKGGDLVGA 789



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 9/137 (6%)

Query: 561 DRILLLSTDGKAYTLPA-GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLV 616
           D IL++S  G++    A  + +   G   +    +    + +++   V        ++ V
Sbjct: 690 DDILMVSRKGQSLRFTASDDQIRPMGRATSGVTGMRFRGDDELLAMRVVPSDAEDAEVFV 749

Query: 617 VSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLI 672
           V   G A      +     R G   K          +   + V   D V VV  + K++ 
Sbjct: 750 VFQSGMAKRTAVDQYRVQGRGGLGVKVAKASDKGGDLVGALVVGQQDEVMVVMSSGKVVR 809

Query: 673 FSIDQIPEMSR-GKGVR 688
             +D++    R   GVR
Sbjct: 810 SRVDEVRMTGRDTSGVR 826


>gi|215425192|ref|ZP_03423111.1| DNA gyrase subunit A [Mycobacterium tuberculosis T92]
 gi|215432911|ref|ZP_03430830.1| DNA gyrase subunit A [Mycobacterium tuberculosis EAS054]
 gi|219555778|ref|ZP_03534854.1| DNA gyrase subunit A [Mycobacterium tuberculosis T17]
 gi|289567888|ref|ZP_06448115.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17]
 gi|289748468|ref|ZP_06507846.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92]
 gi|289756065|ref|ZP_06515443.1| subunit A gyrA [Mycobacterium tuberculosis EAS054]
 gi|289541641|gb|EFD45290.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17]
 gi|289689055|gb|EFD56484.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92]
 gi|289696652|gb|EFD64081.1| subunit A gyrA [Mycobacterium tuberculosis EAS054]
          Length = 838

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 224/776 (28%), Positives = 389/776 (50%), Gaps = 39/776 (5%)

Query: 6   ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++++    ++    ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 1   MTDTTLPPDDSLDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMF 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 61  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 121 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ +A          + E ++  ++  + GPDFPT G ++   + 
Sbjct: 181 IAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAG-LIVGSQG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + L
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVD-GVPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---K 414
           D +++ ++ H+ +V+ RR+++R++ ++ R  IL+GL+ A   +DE+IA+IR  +     +
Sbjct: 359 DQLIRYYVDHQLDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDIAR 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 419 AGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E+ E+ +          RRT       AD     + +I +E + V I+  G+ +   
Sbjct: 479 VRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKRTK 530

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
                  K     +     K+ D +       T D IL  +T G+ Y   A +L      
Sbjct: 531 TDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRT 590

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y     L++ +  G     + ++  +N   G   
Sbjct: 591 ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVA 650

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGI 697
           + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   +     
Sbjct: 651 VNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +   + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 711 LLSLNV-VREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 6/158 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
               D +LL+S +G++    A +      G   +    +  N +  +++  V      LL
Sbjct: 665 CSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLL 724

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLL 671
           V +S G A      E     R GK  L V       ++   + V  D  +  V     ++
Sbjct: 725 VATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVI 784

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 785 RTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 44.8 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 5/142 (3%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F   D L           +L+ ++ G A              
Sbjct: 687 DEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRG 746

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
           G+ +  ++       +V A + D   +L  V+S G        ++    R  KG   + +
Sbjct: 747 GKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNL 806

Query: 645 SSEEKMKLVVK---VTGDHVAV 663
              + +  + +    +GD  AV
Sbjct: 807 GEGDTLLAIARNAEESGDDNAV 828


>gi|220908183|ref|YP_002483494.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425]
 gi|219864794|gb|ACL45133.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425]
          Length = 864

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 244/790 (30%), Positives = 383/790 (48%), Gaps = 54/790 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S    +E + A  LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MTFSQESPQERIIATDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+ID D 
Sbjct: 61  LTPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLIDGHGNFGSIDNDP 120

Query: 126 AAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE+R+  +  + +LQ ++++ VDF D ++    EP+V P++ P LL NG+SGIA
Sbjct: 121 PAAMRYTESRLRPLTCDALLQDIEQETVDFGDNFDGSQQEPLVMPARIPQLLLNGSSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+    +ALI NPEIS E+L++YI GPDFPTG  I+     I E+Y 
Sbjct: 181 VGMATNIPPHNLGELINGVIALIQNPEISSEQLMQYIPGPDFPTGAQIL-GTTGIREAYT 239

Query: 245 LGRGGFRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            GRG   +R    +E +          I++TE+PYQ  K+ LIEKIAE++  KR+  + D
Sbjct: 240 TGRGSITMRGVARIETIEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  D   ++    R   P +++ +++  + ++  F  NM  L     PQ++ L   
Sbjct: 300 IRDESDRDGMRIVIELKRDAYPRVVLNNLYKQTPLQINFGANMLALV-NGEPQLLTLKEF 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-- 418
           L E+L  R +V+ RR+ +  +  + R  +L+GLLIA  N+D +IA+IR+           
Sbjct: 359 LHEFLKFRIQVIERRTQYNKRKAEERDHLLQGLLIALSNLDSVIALIRHAADATTAKQEL 418

Query: 419 -SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              + L+E Q DAIL ++LR L  LE  +I+ E ++L+A+      +L+  ++  + I  
Sbjct: 419 IDSYGLSEPQADAILQMQLRRLTALEAEKIQREHEDLVAQIADFQDILDRPERILSIIQT 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ ++K  F+        +      +    A  +  ++  E   +         +     
Sbjct: 479 EVEQLKTRFASPRRTVIEQLEGEIDTTDLIANQKAVILVTEQGYIKRMPVDTFEAQSRDG 538

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
                   KE D+++        D IL  S  G AY L A  +   S    G  I  L+ 
Sbjct: 539 RGRKGAQIKEDDAVEHFFACCDHDGILFFSDRGVAYCLKAYQIPIGSRNARGVPIVQLLP 598

Query: 596 LNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +   + I +    D       L+++++ G       S        G   + + + ++++ 
Sbjct: 599 IPREEKITSVVPVDEFREDEYLVMLTAGGYIKKTALSAFSNIRANGLIAIALETGDQLRW 658

Query: 653 VVKV-TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGG------------ 696
           V +   GD + +       + F  D  Q+  + R  +GVR  + + G             
Sbjct: 659 VRRAREGDSIIIGSRQGMAIHFRTDHEQLRPLGRATRGVRAMALRAGDELIGMDILPSAI 718

Query: 697 -----------------------ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
                                  + ++       G   +      + +        L  R
Sbjct: 719 VANLAVATSDAEVESEEGAEEMPLEEIPINADNPGPWVLVVTTCGFGKRVPVSQFRLQNR 778

Query: 734 GGVGSLVPKG 743
            G G    K 
Sbjct: 779 AGKGITATKF 788



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVVKVTG-DHVA 662
           +    +LVV++ G    V  S+     R GK           +++++  +  V G D + 
Sbjct: 751 NPGPWVLVVTTCGFGKRVPVSQFRLQNRAGKGITATKFKTRQTQDQLAALRIVNGEDELM 810

Query: 663 VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           +V     ++  S+  I   SR   GVRLQ   +      +       LT
Sbjct: 811 IVTNRGIIIRQSVGAISSQSRAATGVRLQRLDEEDSIAAVTIVPSTELT 859



 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 4/105 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             +L+++T G    +P          G+ I             +    + +   +L++V+
Sbjct: 754 PWVLVVTTCGFGKRVPVSQFRLQNRAGKGITATKFKTRQTQDQLAALRIVNGEDELMIVT 813

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
           ++G         I + +R   G    ++  E+ +  V  V    +
Sbjct: 814 NRGIIIRQSVGAISSQSRAATGVRLQRLDEEDSIAAVTIVPSTEL 858


>gi|15828618|ref|NP_325978.1| DNA gyrase subunit A [Mycoplasma pulmonis UAB CTIP]
 gi|14089560|emb|CAC13320.1| DNA GYRASE SUBUNIT A [Mycoplasma pulmonis]
          Length = 887

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 240/751 (31%), Positives = 392/751 (52%), Gaps = 29/751 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++   ++  +L YA+S I  RAIPD RDG KPVHRRI++ M ++GL   +AFKKSARI
Sbjct: 66  PVTVSKEMQNSFLEYAMSVIVSRAIPDARDGLKPVHRRILYGMFDLGLHHSSAFKKSARI 125

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD SVY+++VR+AQ F  RYPL+ G GNFG+IDGD AAA RYTEAR+++
Sbjct: 126 VGDVLGKYHPHGDASVYEAMVRMAQEFSMRYPLVDGHGNFGSIDGDPAAAMRYTEARLSK 185

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++  +L G+ ++ V+F   Y+  + EP V PS+FPNLL  G  GIAVGMAT+I  HN+ E
Sbjct: 186 LSAEMLNGIRKNTVNFIPNYDASEVEPEVLPSRFPNLLVTGGQGIAVGMATTIAPHNLAE 245

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
              A +A   NP+IS+ +L+E+I GPDFPTGGII+   + I++++  G+G   +R++  +
Sbjct: 246 TISATIAYARNPQISLAELMEHIKGPDFPTGGIIL-GTKGIIDAFETGKGSISIRSKTEI 304

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E +  G   I+V+EIPY VQK+ +IEKIA L+  K I  + D+RDE+      ++    +
Sbjct: 305 EYLSNGKTRIIVSEIPYSVQKTTIIEKIALLVKEKVIEGISDLRDETNRKGIRIVIEVKK 364

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +  P++++  +F  ++++  F +NM  L     P+++ L   L+ +L H++E++ RR  F
Sbjct: 365 NFVPEVVLNKLFKTTNLQLNFNVNMVALV-NGEPKLLSLKDALRVYLDHQKEIVIRRLKF 423

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNLR 435
            ++  + R+ IL+GL IA  NIDE+I IIR                 L+E Q  AI+ +R
Sbjct: 424 DLEKSEARLHILEGLKIAVSNIDEVIRIIRASKTDSEAQEKLGQKFSLSEIQTKAIVEMR 483

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  L   +++ E+  LL     I  +LNS ++  + I  E+ E+KE +       +R
Sbjct: 484 LGRLTGLAIEKMEQEIQELLITISNIKEILNSEQKLIDLIVEELEEIKEKYGD-----KR 538

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
            T       A      + +I +  I ++ S +G+++              V  S     E
Sbjct: 539 LTQIDSY--AIANISDEDLIPERNIAIIQSVKGYVKRINLSEYKVQNRGGVGTSTAKTYE 596

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D L   +   T   +L+ ++  K Y + A  +       +      LI +  ++++V+ 
Sbjct: 597 DDDLASIITTTTHTDLLIFTSFAKVYRIRAHQIPESSKQSKGIPFINLIQIEKDEEVVSI 656

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
                YD    L+ ++  G     +          GK  + +   +K+   + +  D   
Sbjct: 657 LPAQNYDDGKFLVTLTQNGLIKKTKIEHFQRINTNGKIAMVILENDKLVRAMILNNDEEI 716

Query: 663 VV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           +V     K++ F + ++ +  R   GVR         +  +     EG          + 
Sbjct: 717 IVGSSEGKIVRFDLSEVRDTGRKSAGVRAIKLAPKHKAISLSAS-SEGKYVFSLGSLGFG 775

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +          KR   G +  K   ++GK +
Sbjct: 776 KKTPIEDYRKTKRAAKGVITIKV-DKAGKLV 805



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 11/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      + L     +     V ++  G I+  K             A+   E D L
Sbjct: 645 IQIEKDEEVVSILPAQNYDDGKFLVTLTQNGLIKKTKIEHFQRINTNGKIAMVILENDKL 704

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             A+  +  + I++ S++GK        +        A    I L      ++       
Sbjct: 705 VRAMILNNDEEIIVGSSEGKIVRFDLSEVRDTGRKS-AGVRAIKLAPKHKAISLSASSEG 763

Query: 612 CKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENR 668
             +  + S G        +     R  KG   +KV    K+     V G + + ++    
Sbjct: 764 KYVFSLGSLGFGKKTPIEDYRKTKRAAKGVITIKVDKAGKLVHSGFVEGSEDIIILNSKG 823

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             +  S++Q+ + SR  KGV++   K       +  
Sbjct: 824 IAIRTSLEQVSDTSRSTKGVKIIQLKKDEKIKSLTL 859


>gi|124485240|ref|YP_001029856.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z]
 gi|124362781|gb|ABN06589.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z]
          Length = 824

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 249/767 (32%), Positives = 409/767 (53%), Gaps = 31/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEM 64
           +++      + V ++++   ++  ++ YA+S I  RAIPD+RDG KPVHRRI++AM  + 
Sbjct: 1   MTSEENTTHKTV-SINIEDEMKNCFIDYAMSVIIGRAIPDVRDGLKPVHRRILYAMFHDE 59

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G     A+KKSA+ V   +G  HPHGD ++YD+LV++AQPF  RY L+ GQGNFG+IDGD
Sbjct: 60  GNTSDKAYKKSAKAVAATMGNYHPHGDSAIYDTLVKMAQPFSYRYTLVDGQGNFGSIDGD 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEAR+T+ AE +L+ +D++ VDF   ++E   EP V PS+ PNLL NGT+GIA
Sbjct: 120 SAAAMRYTEARLTKAAESLLEDIDKETVDFVPNFDESSQEPDVLPSRIPNLLVNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++  HN+ E+C+   A IDNPE+S+E++++ +  PDFPTGG I    + IV +Y+
Sbjct: 180 VGMATNMMPHNLGEVCDLVDAYIDNPEMSLEEMMKILPAPDFPTGGKI-MGTDGIVNAYQ 238

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   +R    +EE  +G   IV+TEIPYQV K+ +IEKIA+L+ +K I  + DIRDE
Sbjct: 239 TGQGKVVLRGIAEIEERKKGFEQIVITEIPYQVNKAAMIEKIADLVKSKTIEGISDIRDE 298

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   V+    ++   ++++  ++  + +E+ F +    +   + P+++ L  +L+ +
Sbjct: 299 SDKDGIRVIIELKQNTQANVVLNLLYKHTQLESSFGIINLAIVD-KKPKILSLAELLRHF 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           +AHR +V+ RRS F ++  + R+ IL GLL A   ID +IA IR   +    +  +VS+ 
Sbjct: 358 IAHRVDVVRRRSLFDLRKAEERMHILSGLLKALDMIDVVIATIRASPEVSVAQEALVSKL 417

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             +E Q +AIL ++LR L  LE+ +I  E  +L    +K+  +L+S +   + +  E  E
Sbjct: 418 GFSEAQAEAILKMQLRRLAALEQQKILDETTSLQLVIDKLTWILSSEENILSVVKTETSE 477

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           ++  ++       RRT       A+       +I  E   V+++ + +I+          
Sbjct: 478 IRTAYADE-----RRTQI--DYTANTDFNVMDLIPDEQTLVMLTTQNYIKRVPLDLYRQQ 530

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K     +  +  K+ DS+     A+T D +L  +  G+ Y L    +  G    +   ++
Sbjct: 531 KRGGRGVIGMTTKDEDSVDKVFLANTHDYLLCFTNKGRVYWLRVYEIPEGSRTSKGKAIV 590

Query: 594 IDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
             LN   + V+A +    +D+   LL  + KG      +         G   + +   ++
Sbjct: 591 NLLNLTDEEVSAVIPMRDFDAEKNLLYATKKGRVGKFSQDLFSRPRTGGIIGITLLDGDE 650

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK-DGGISDVICFKIC 706
           +  VV   G   V +     + L FS D++    RG +GV     K +G    V    + 
Sbjct: 651 LVDVVVTDGSTDVVLTTAFGQALRFSEDEVRATGRGTQGVIGIRLKFEGDY--VCALTLV 708

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    +    + + +           RG  G          GK +SS
Sbjct: 709 ETQYLLMITDKGFGKRTEFEEFRGHGRGTQGVKSIVANFERGKVVSS 755



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFL--KVSSEEK 649
           I L    D V A     T  LL+++ KG     E  E   + R   G   +       + 
Sbjct: 693 IRLKFEGDYVCALTLVETQYLLMITDKGFGKRTEFEEFRGHGRGTQGVKSIVANFERGKV 752

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
           +  +     D V +      +L  S   I    RG KGVR+     G     +     + 
Sbjct: 753 VSSLAVSDDDQVIITTAGGVVLRTSASDISIQGRGTKGVRVIRVDSGDKVTSVAIVPPDE 812

Query: 709 LT 710
             
Sbjct: 813 DE 814


>gi|306778294|ref|ZP_07416631.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001]
 gi|306974413|ref|ZP_07487074.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010]
 gi|307082121|ref|ZP_07491291.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011]
 gi|308213444|gb|EFO72843.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001]
 gi|308356308|gb|EFP45159.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010]
 gi|308360195|gb|EFP49046.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011]
          Length = 838

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 226/776 (29%), Positives = 389/776 (50%), Gaps = 39/776 (5%)

Query: 6   ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++++    ++    ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 1   MTDTTLPPDDSLDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMF 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YDSLVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 61  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 121 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ +A          + E ++  ++  + GPDFPT G ++   + 
Sbjct: 181 IAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAG-LIVGSQG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + L
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVD-GVPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---K 414
           D +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     +
Sbjct: 359 DQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 419 AGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E+ E+ +          RRT       AD     + +I +E + V I+  G+ +   
Sbjct: 479 VRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKRTK 530

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
                  K     +     K+ D +       T D IL  +T G+ Y   A +L      
Sbjct: 531 TDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRT 590

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y     L++ +  G     + ++  +N   G   
Sbjct: 591 ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVA 650

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGI 697
           + +   +++   V  + GD + +V  N + + FS     +  M R   GV+   +     
Sbjct: 651 VNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +   + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 711 LLSLNV-VREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 6/158 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
               D +LL+S +G++    A +      G   +    +  N +  +++  V      LL
Sbjct: 665 CSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLL 724

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLL 671
           V +S G A      E     R GK  L V       ++   + V  D  +  V     ++
Sbjct: 725 VATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVI 784

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 785 RTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 44.8 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 5/142 (3%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F   D L           +L+ ++ G A              
Sbjct: 687 DEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRG 746

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
           G+ +  ++       +V A + D   +L  V+S G        ++    R  KG   + +
Sbjct: 747 GKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNL 806

Query: 645 SSEEKMKLVVK---VTGDHVAV 663
              + +  + +    +GD  AV
Sbjct: 807 GEGDTLLAIARNAEESGDDNAV 828


>gi|150021071|ref|YP_001306425.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429]
 gi|149793592|gb|ABR31040.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429]
          Length = 806

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 231/752 (30%), Positives = 399/752 (53%), Gaps = 25/752 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
               +   L++ YL+Y++S I  RAIPD+RDG KPV RRI+++M E+G+     FKKSAR
Sbjct: 3   INRPIEEELKQSYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSAR 62

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVGEV+GK HPHGD ++YD+LVRLAQ +  RY L+ GQGNFG++D D  AA RYTEAR++
Sbjct: 63  IVGEVMGKYHPHGDAAIYDTLVRLAQDWSIRYTLVEGQGNFGSVDKDPPAAMRYTEARLS 122

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           +++E +L+ +D++ ++  D ++    EP+V PSKFPNLLANG++GIAVGM T+IP HN+ 
Sbjct: 123 KISEELLEDIDKETINMMDNFDGSLKEPIVLPSKFPNLLANGSTGIAVGMTTNIPPHNIS 182

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +  LALI NP+ISIE+L+E+I GPDFPTGG I+  R  I E Y  G+G F +R +  
Sbjct: 183 ELVDGFLALIKNPQISIEELIEFIPGPDFPTGGEII-GRAGIREMYTTGKGSFTIRGKLH 241

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           VEE  +    IV+TEIPY V K+ LI+KI E      +  ++DIRDES ++   ++    
Sbjct: 242 VEEDKKK-KKIVITEIPYNVSKADLIKKIVEYAENSSLQ-IKDIRDESDKEGLRIVIEIP 299

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            +++ D+++ +++  + +++ F   + V+   + P +M L  ++  ++ HR EV+ +R+ 
Sbjct: 300 NNVNEDIIINNLYKHTQLQSSFHAQLLVIDKDKRPVLMNLKELMWAFVEHRFEVVRKRAQ 359

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
           F  +   ++  IL+GL+ A  +ID II++IRN +        ++  F  TE Q  AI++L
Sbjct: 360 FFYKQYSKKAHILEGLIKASRSIDTIISVIRNSEDQNSAIKELMEMFDFTETQAKAIVDL 419

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL  L KLE  ++  + + L+ + +    L+   ++ + +I  E+  +K  +        
Sbjct: 420 RLGRLTKLEISKLIEDYNELVKKMKIEKELIGKDEKVYEKIIEELTYIKAQYGD-----S 474

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFK 546
           R++   +    +    +  +I  + + + ++ +G+++ +        K     ++     
Sbjct: 475 RKSEILDHEEREIKFNELELIPDKEVVISLTKKGYLKMMSLSTFRTQKRGGKGVTGSSLM 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVT 604
             D++   ++ H   + L  ++ GK Y L        S    G+ I   I+++ ++ I+T
Sbjct: 535 NDDAIMEIIYTHLHGKTLFFTSKGKVYLLNNYQIEENSRTSKGKHISKYINIDKDEKILT 594

Query: 605 AFVYDST-CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--V 661
               D+   +L  V+  G        +      +G   +     + +  V K+  +   +
Sbjct: 595 MLSVDNFVGELFFVTKFGKVKRTSLKDFENINARGLRAINFDGNDSLVSVQKIENEKQTI 654

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +  +N   + F I ++  M R   GV                   +    +      Y 
Sbjct: 655 LIATKNGMSIRFPISEVRTMGRSAMGVTGIKLSKDDKVVSSALLSNDENYILTVTSLGYG 714

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        + KR G+G        ++G  +S
Sbjct: 715 KLTETSQYRIQKRAGLGIKNISDVSKTGYVVS 746



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 5/157 (3%)

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           +    IL+ + +G +   P   + +       +  +     ++ + +A + +    +L V
Sbjct: 649 NEKQTILIATKNGMSIRFPISEVRTMGRSAMGVTGIKLSKDDKVVSSALLSNDENYILTV 708

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIF 673
           +S G   + E S+     R G     +S   K   VV V+     + + +  ++   +  
Sbjct: 709 TSLGYGKLTETSQYRIQKRAGLGIKNISDVSKTGYVVSVSYVLGNEDIMIFTKHGMSIKI 768

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           +I  +  + R  KGV+L +  +G     I     E  
Sbjct: 769 NISGLRALGRVTKGVKLLNLSEGDKIADIAIISGEED 805



 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 61/186 (32%), Gaps = 11/186 (5%)

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK- 546
              ++  R          D     Q +  ++   ++ +  G         V         
Sbjct: 621 DFENINARGLRAINFDGNDSLVSVQKIENEKQTILIATKNGMSIRFPISEVRTMGRSAMG 680

Query: 547 --------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                   +   +  AL ++  + IL +++ G             +  G  I+ + D++ 
Sbjct: 681 VTGIKLSKDDKVVSSALLSNDENYILTVTSLGYGKLTETSQYRIQKRAGLGIKNISDVSK 740

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV 656
              +V+         +++ +  G +  +  S + A  R  KG   L +S  +K+  +  +
Sbjct: 741 TGYVVSVSYVLGNEDIMIFTKHGMSIKINISGLRALGRVTKGVKLLNLSEGDKIADIAII 800

Query: 657 TGDHVA 662
           +G+   
Sbjct: 801 SGEEDV 806


>gi|309811389|ref|ZP_07705176.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185]
 gi|308434696|gb|EFP58541.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185]
          Length = 931

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 229/774 (29%), Positives = 378/774 (48%), Gaps = 46/774 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             V  + L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM + G      + K
Sbjct: 69  HRVDPIDLNAEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRPDRGYNK 128

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+G+ HPHGD ++YD+LVRL QP+  RYPL+ GQGNFG+   D AAA RYTE 
Sbjct: 129 CSRVVGDVMGQYHPHGDSAIYDALVRLVQPWSMRYPLVDGQGNFGSPGNDGAAAPRYTEC 188

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ + E+ VDF   Y+ +  +P V PS+FPNLL NG++GIAVGMAT IP H
Sbjct: 189 RMAPLAMELVRDIHENTVDFEPNYDGKTLQPSVLPSRFPNLLVNGSAGIAVGMATQIPPH 248

Query: 195 NVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +AA  L+ NPE S    +E+ L  I GPDFPTG  ++  +  + ++YR GRG  
Sbjct: 249 NLREVADAAQWLLANPEASREALLEECLRRIPGPDFPTGA-LIMGKRGVEDAYRTGRGSI 307

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA   VEE+ +G  C+VVTE+PYQV    L EKIA L+   ++  + DIRDE++    
Sbjct: 308 TMRAVVNVEEI-QGRQCLVVTELPYQVNPDALAEKIAMLVKDGKMAGIADIRDETSGRTG 366

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  + ++  F  NM  L    VP+ +P+   ++ W+ H+ 
Sbjct: 367 QRLVIVLKRDAIAKVVLNNLYKHTQLQQNFGANMLALVD-GVPRTLPISAFIRYWVEHQI 425

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           +V+ RR+ FR+   ++R+ IL+GLL A   +DE+IA+IR        +  ++    + E 
Sbjct: 426 DVIVRRTQFRLDEAEKRIHILRGLLKALDMLDEVIALIRRSPTVDDARTGLIELLDIDEI 485

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL ++LR L  LE  +I  + D L ++ +    +L   ++Q   ++ E+ E+ E +
Sbjct: 486 QANAILEMQLRRLAALERQRIIEQHDELQSKIDDYKDILAKPERQRQIVSDELAEIVEKY 545

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RR+              + +I +E + V I+  G+++  K            
Sbjct: 546 GD-----DRRSQIVPFDGDMN---MEDLIPEEDVVVTITRGGYVKRTKVSEYRSQRRGGK 597

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +  D +       T D +L  +  G+ Y      L  G    +   +  L+  
Sbjct: 598 GVRGATLRGDDVVGHFFTTSTHDWLLFFTNAGRVYRTKGYELPEGSRDSKGQHVANLLAF 657

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y  +  LL+ +  G       SE  +    G   + +   +++   
Sbjct: 658 QPGEQIAQVMALRTYADSEYLLLATRNGLVKKTRLSEYDSPRSGGLIAVNLRDGDELVGA 717

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKI---- 705
              T  D V +V    + + F+     +  M R   GV    +++G     +        
Sbjct: 718 GLATHDDDVLLVSRKGQAVRFAATDDSLRPMGRSTSGVTGMKFREGDELLSMNVVPKGAN 777

Query: 706 ------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  E L           +           R  +G  V     R G  + +
Sbjct: 778 EVERGADEKLCVFVVFENGLAKRTPVEEYPTKGRATLGVKVATISERGGDLVGA 831


>gi|326560266|gb|EGE10654.1| DNA gyrase subunit A [Moraxella catarrhalis 7169]
 gi|326566416|gb|EGE16566.1| DNA gyrase subunit A [Moraxella catarrhalis BC1]
          Length = 888

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 236/827 (28%), Positives = 399/827 (48%), Gaps = 96/827 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G D+   +
Sbjct: 1   MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L++GQGNFG++DGD  AA RYT
Sbjct: 61  LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M ++   +L  +D++ VD+ D Y+     P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  ++P IS ++L+ +I GPDFPTGG I+  R  I+++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGG-IIHGRSGIIDAYRTGKGRLHI 239

Query: 253 RARWCVEEVGR-----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E +G          I+ T+IPYQV K+ LI+ IA+L+ AK+I  + +IRDES +
Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V     R  + ++++ ++F  + +ET F +NM  L     P++M L  ++  ++ H
Sbjct: 300 EGVRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALD-NGQPKLMTLRDLVAAFIRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
           R+EV+ RR+ F +     R  +L+GL IA  NID+I+  I+                   
Sbjct: 359 RQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQS 418

Query: 416 --------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                              +R+ L+ +QV+AIL+++L  L  LE
Sbjct: 419 AGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E   +L E  ++  +L+        +  E+ ++++ F        R+T   +  
Sbjct: 479 QDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDE-----RKTDIVD-- 531

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
            A     ++ +I ++ + + +S  G+         ++ K      SA   KE D ++  L
Sbjct: 532 -ARHDFNREDLIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLL 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY----D 609
              T   IL  +  G+ + L    +       +   +  LI+L  ++ +          D
Sbjct: 591 VTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKD 650

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               +   ++ G    V  S+       G   + ++  + +  V    G+  + +     
Sbjct: 651 ENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEG 710

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQS------YKDGGIS---------------DVICFKIC 706
           K + F    I  MSR  KGVR           +  +                 V      
Sbjct: 711 KAIRFKEQSIRAMSRVAKGVRGMRVNLLTTIDEEELLDEDGDEVGDDFAVSRVVSLVVAP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    + +    + +           RGG G +  K   R+G+ + +
Sbjct: 771 KQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKA 817



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 5/116 (4%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKV 656
            +V+  V     ++L     G        +     R GK  + + + E+    +K +   
Sbjct: 762 RVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAVT 821

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             + V ++ +   L+   + QI    R  +GV+L    D  +   +     +    
Sbjct: 822 GEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVGMACVEHDDDEI 877


>gi|121602587|ref|YP_989035.1| DNA gyrase subunit A [Bartonella bacilliformis KC583]
 gi|18920720|gb|AAL82403.1|AF469609_2 gyrase A subunit [Bartonella bacilliformis]
 gi|120614764|gb|ABM45365.1| DNA gyrase, A subunit [Bartonella bacilliformis KC583]
          Length = 928

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/856 (30%), Positives = 415/856 (48%), Gaps = 118/856 (13%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++   L E +    ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDLTRLPEHDVSTGIEPVSIIEEMQCSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++
Sbjct: 61  NEMGLLFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +VAE +L  +D+D VDF+D Y+  + EP+V P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKDTVDFQDNYDGREHEPIVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I+I+++L  I GPDFPTGGII+     +  
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCVALIDNPNITIDEMLAIIPGPDFPTGGIIL-GHSGVRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE+      I+V+EIPYQV K+ ++EK+AEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVEIEEIRNQRQAIIVSEIPYQVNKATMVEKMAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    R    D+++  ++  + ++  F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRDGYRVVIELKREAVADVVLNQLYRYTPLQASFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + +++ R EV+ RR+ + ++    R  +L GL IA  NIDEII +IR    P+       
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIELIRKAHDPQTARTQLM 418

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWPASEVAALIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRNEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +      +L S  +  + +  E+  ++E F+       RRT F   S        +
Sbjct: 479 AIGEDIADYLGILASRSRIMDIVKSELSALRETFATP-----RRTVFGFGSAEMDC---E 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+I+          +      S +  K+ D +     A+T   +L
Sbjct: 531 DLIVPEDMVVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMATKDQDFVTRLFVANTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G A+  ++ L   + I T               ++ 
Sbjct: 591 FFSSRGIVYKEKVWRLPVGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWGKLDIMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ I   R GK  +K+    +++  V   T  D V ++  N + + F 
Sbjct: 651 ATTRGTVRRNKLSDFIQVNRNGKIAMKLDEEGDEILSVETCTEHDDVVLITANGQCIRFP 710

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICF--------------------------KIC 706
           +  I     R   GVR  +  +G     +                               
Sbjct: 711 VTDIRVFSGRNSMGVRGINMVEGDKVISMTILEHVEATSVERSAYIKRAINERRVAGSDD 770

Query: 707 EGLT---------------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           E +                             +  +   Y +  +     +  RGG G  
Sbjct: 771 EDILTVDEDGEETEVELTDERYAELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIR 830

Query: 740 VPKGFP--RSGKFLSS 753
                     GK +++
Sbjct: 831 ATDLSKAAEIGKLVAA 846



 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEK---MKLVVKVTG-DHVAVV 664
              LL VS  G        +   + R  KG     +S   +   +     V   D + +V
Sbjct: 799 EQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDLSKAAEIGKLVAAFPVGERDQIMLV 858

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLT 710
            +  +L+   ++ I    R  KGV + +   G  +  V      E  T
Sbjct: 859 SDGGQLIRVPVNCIRIAGRSTKGVTVFNTAKGEKVVSVERISESENDT 906


>gi|296447102|ref|ZP_06889034.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b]
 gi|296255371|gb|EFH02466.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b]
          Length = 911

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 247/848 (29%), Positives = 390/848 (45%), Gaps = 97/848 (11%)

Query: 1   MGVDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  D+   +       +++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ 
Sbjct: 1   MADDDTEKTGAAAPGSDIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRIMF 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M E G      + KSARIVG+V+GK HPHGD ++YD+LVR+AQPF  R PLI GQGNFG
Sbjct: 61  SMHENGHTPDKPYVKSARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++D D  AA RYTE+R+ + A  +L+ +DE  VDF+  Y++++ EP V P++FPNLL NG
Sbjct: 121 SVDNDPPAAMRYTESRLAKPALALLEDLDEGTVDFKPNYDDKEMEPTVLPARFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +AA+ALID P++S+ +L+E + GPDFPT   I+  R  I
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDAAIALIDRPDMSVAELMEIVPGPDFPTAATIL-GRGGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y  GRG   +RA+  +E + +    I+ TEIPYQV K+ LIE+IAEL+  K+I  + 
Sbjct: 240 RNAYSTGRGSIIMRAKAEIETLRKEREAIIFTEIPYQVNKAALIERIAELVREKKIEGVA 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  D   ++    R    D+++  ++  + +++ FP+NM  L+ G  P+++ L  
Sbjct: 300 DLRDESDRDGMRIVVELKRDAVADVVLNQLWRHTALQSSFPVNMIALN-GGRPELLTLKD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------- 410
           +L  ++  R  V+ RR+ FR+        +  GL IA  NIDE+I +IR           
Sbjct: 359 VLVAFVDFRESVVTRRTKFRLNKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAAAREA 418

Query: 411 --------------------DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                +          L+E Q  AIL+LRL+ L  L   +I   
Sbjct: 419 LMERLWPAKDMAPLVALIADPRHVLHEDGTIRLSEAQARAILDLRLQRLTALGREEIAEA 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           L+ L AE  +   +L S ++ +  +  E+  VK  ++                    A  
Sbjct: 479 LNKLAAEIAEYLEILRSREKLFGIVKDEMIAVKTAYATPRRTQIVDGDGDVEDEDLIARE 538

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              +       +        R+ +      S +  KE D +     A T   +L  S+ G
Sbjct: 539 DMVVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQTKEEDFVHRLFVASTHTPVLFFSSLG 598

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGN 622
           +AY      L   + +  G+A+  L+ L  N+ I T                +  +++G 
Sbjct: 599 RAYKEKVWRLPLAAPQARGKALVNLLPLEQNERITTIMPLPEDESSWATLDAIFATTRGT 658

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE- 680
               + S+     R G   +K+   E +  V      D V +     + + F +  +   
Sbjct: 659 VRRNKLSDFSDVRRSGIIAMKLDEGEAIVDVATASENDDVLLTTREGQCIRFPVTDVRVF 718

Query: 681 MSRGK-GVRLQSYK-DGGISDVICFKICE------------------------------- 707
            SR   GVR  +   +  +  +   +  E                               
Sbjct: 719 QSRSSMGVRGVALAAEDRVISLSILRHFEASGEERAAYLKRAAAQRRAGAQENGAEEGAA 778

Query: 708 ----------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                                     +  +   Y +  +     +  RGG G +      
Sbjct: 779 EAEESSASIELSEARFRDMEQAEQIILTVSENGYGKRSSSFEYRITGRGGKGIVAMAVNA 838

Query: 746 RSGKFLSS 753
           R+GK ++S
Sbjct: 839 RNGKLVAS 846



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 2/89 (2%)

Query: 659 DHVAV-VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           + + + V EN      S  +     RG KG+   +        V  F +  G   +    
Sbjct: 801 EQIILTVSENGYGKRSSSFEYRITGRGGKGIVAMAVNARNGKLVASFPVGSGAEIMLVTD 860

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                        +  RG  G +V     
Sbjct: 861 GGQLIRCPVEGIRIVGRGTQGVIVFDTAE 889


>gi|317123187|ref|YP_004097299.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043]
 gi|315587275|gb|ADU46572.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043]
          Length = 903

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 226/772 (29%), Positives = 379/772 (49%), Gaps = 37/772 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
             +    + V+ + L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM + G  
Sbjct: 36  ERDPDQHDRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYR 95

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + K AR+VG+V+G  HPHGD ++YD+LVRL Q +  RYPL+ GQGNFG+   D AA
Sbjct: 96  PDRGYNKCARVVGDVMGHYHPHGDSAIYDALVRLVQDWSMRYPLVDGQGNFGSRGNDGAA 155

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM  +A  +++ +++D VDF   Y+ +  +P V PS+FPNLL NG++GIAVGM
Sbjct: 156 APRYTECRMASIALEMVRDIEQDTVDFIPNYDGKTMQPSVLPSRFPNLLVNGSAGIAVGM 215

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESY 243
           AT IP HN++E+ E A   + +PEIS E+LLE     I GPDFPTG  ++     I ++Y
Sbjct: 216 ATQIPPHNLREVAEGAQYYLHHPEISREELLEALLGIIKGPDFPTGS-LIMGHRGIEDAY 274

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG   +RA   VEE+     C+VVT++PYQV   +L  KIA+L+   +I  + DI D
Sbjct: 275 RTGRGSIIMRAIVNVEEIK-NRQCLVVTQLPYQVNPDQLAVKIADLVKDGKIAGIADIAD 333

Query: 304 ESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           E++      ++    R     +++ +++  + ++T F  NM  L    VP+ +PLDG ++
Sbjct: 334 ETSGRTGLRIVITLKRDAVAKVVLNNLYKHTQLQTTFGANMLALVDD-VPRTLPLDGFIR 392

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVS 419
            W+ H+ EV+ RR++FR++  +  + +L+G L A   +DE+IA+IR        +  ++ 
Sbjct: 393 HWVDHQIEVIQRRTTFRLRKAEAEIHLLRGYLKALDMLDEVIALIRRSQTVEDARDGLIQ 452

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + E Q  AILN++LR L  LE  +I+ + D L    ++  ++L S  +Q   ++ E+
Sbjct: 453 LLDIDETQAQAILNMQLRRLAALERERIQQQHDELQELIDEYQAILASEVRQREIVSEEL 512

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
           + + + +        RRT              + +I +E + V I+  G+ +        
Sbjct: 513 QGIVDKYGDE-----RRTEIVPFDGDMS---MEDLIPEEDVVVTITRGGYAKRTRTDLYR 564

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--A 589
             +     +     +  D ++      T   +L  +  G+ Y      L  G    +   
Sbjct: 565 SQRRGGKGVKGAQLRGEDVVEHFFTTTTHHWLLFFTNLGRVYRAKGYELPEGSRDSKGQH 624

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  L+     + I        Y++   L++ +  G        +  +    G   + +  
Sbjct: 625 VANLLAFQPGEQIAQVLAIHDYEAADYLVLATRAGLVKKTRLRDYDSPRSGGLIAINLRE 684

Query: 647 EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVIC 702
            +++     V   D + +V      + F+     +  M R   GV    ++ G     + 
Sbjct: 685 GDELVGARLVAAADDLLLVSRKGMSVRFTATDSALRPMGRSTSGVTGMKFRPGDTLLSMS 744

Query: 703 FKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               E  +           +        +  RGG G  V K   + G  + +
Sbjct: 745 RVPAETDVDVFVVFENGLAKRTPVSEYRVQGRGGYGIQVAKLSEKGGDLVGA 796


>gi|260198990|ref|ZP_05766481.1| DNA gyrase subunit A [Mycobacterium tuberculosis T46]
 gi|289441373|ref|ZP_06431117.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46]
 gi|289414292|gb|EFD11532.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46]
          Length = 783

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 224/776 (28%), Positives = 389/776 (50%), Gaps = 39/776 (5%)

Query: 6   ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++++    ++    ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 1   MTDTTLPPDDSLDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMF 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 61  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 121 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ +A          + E ++  ++  + GPDFPT G ++   + 
Sbjct: 181 IAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAG-LIVGSQG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + L
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVD-GVPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---K 414
           D +++ ++ H+ +V+ RR+++R++ ++ R  IL+GL+ A   +DE+IA+IR  +     +
Sbjct: 359 DQLIRYYVDHQLDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDIAR 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 419 AGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E+ E+ +          RRT       AD     + +I +E + V I+  G+ +   
Sbjct: 479 VRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKRTK 530

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
                  K     +     K+ D +       T D IL  +T G+ Y   A +L      
Sbjct: 531 TDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRT 590

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y     L++ +  G     + ++  +N   G   
Sbjct: 591 ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVA 650

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGI 697
           + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   +     
Sbjct: 651 VNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +   + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 711 LLSLNV-VREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765


>gi|150396459|ref|YP_001326926.1| DNA gyrase subunit A [Sinorhizobium medicae WSM419]
 gi|150027974|gb|ABR60091.1| DNA gyrase, A subunit [Sinorhizobium medicae WSM419]
          Length = 931

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 247/856 (28%), Positives = 404/856 (47%), Gaps = 119/856 (13%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++  +T         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ M
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+G+D+   + K AR+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ + A  +L  +D++ VDFRD Y+    EPVV P+KFPNLL NG  
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKETVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A +ALIDNP I + +L++ I GPDFPTG  ++  R  I +
Sbjct: 181 GIAVGMATNIPPHNLGEVIDACIALIDNPAIELPELMQIIPGPDFPTGA-LILGRSGIRQ 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV KS +IEK+AEL+  KRI  + D+
Sbjct: 240 AYETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      V+    R  + ++++  ++  + ++T F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + +++ R EV+ RR+ + ++    R  +L GL IA  NIDE+I +IR    P+       
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLM 418

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWPAHDVDGLIRLIDDPRHRINDDATYNLSEEQARAILELRLQRLTALGRDEIGDELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E +    +L+S  +    +  E+  V++ F        RRT   E          +
Sbjct: 479 KIGDEIKDYLDILSSRLRIMQIVKDELTSVRDEFGTP-----RRTEIAE---GGPDMDDE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  ++ D +     A+T   +L
Sbjct: 531 DLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L   + I T               ++ 
Sbjct: 591 FFSSRGIVYKEKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWQNLDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 651 STTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFP 710

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  S  DG     +                               
Sbjct: 711 VADVRVFAGRNSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRAVTGEE 770

Query: 706 -------------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                                          +  + + + +  +        RGG G   
Sbjct: 771 EEIVLVGEEVTNGGELTNERYEELKAREQFILTVSKKGFGKRSSSYDFRTSGRGGKGIRA 830

Query: 741 PKGFPRS---GKFLSS 753
                ++   G+ +++
Sbjct: 831 TDTS-KTAEIGELVAA 845



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        +   + R GK        K +   ++     +   D + +V
Sbjct: 798 EQFILTVSKKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDVICFKICEGLT 710
            +  +L+   ++ I   SR  KGV + S  KD  +  V      +G  
Sbjct: 858 SDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERISEPDGDE 905


>gi|189024253|ref|YP_001935021.1| DNA gyrase subunit A [Brucella abortus S19]
 gi|237815520|ref|ZP_04594517.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A]
 gi|254697459|ref|ZP_05159287.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|254706715|ref|ZP_05168543.1| DNA gyrase subunit A [Brucella pinnipedialis M163/99/10]
 gi|254710177|ref|ZP_05171988.1| DNA gyrase subunit A [Brucella pinnipedialis B2/94]
 gi|254714175|ref|ZP_05175986.1| DNA gyrase subunit A [Brucella ceti M644/93/1]
 gi|254730356|ref|ZP_05188934.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|256031671|ref|ZP_05445285.1| DNA gyrase subunit A [Brucella pinnipedialis M292/94/1]
 gi|256113656|ref|ZP_05454467.1| DNA gyrase subunit A [Brucella melitensis bv. 3 str. Ether]
 gi|256159822|ref|ZP_05457559.1| DNA gyrase subunit A [Brucella ceti M490/95/1]
 gi|189019825|gb|ACD72547.1| DNA gyrase subunit A [Brucella abortus S19]
 gi|237788818|gb|EEP63029.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A]
 gi|326409120|gb|ADZ66185.1| DNA gyrase subunit A [Brucella melitensis M28]
          Length = 934

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 263/855 (30%), Positives = 411/855 (48%), Gaps = 114/855 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KI 705
           +  +     R   GVR  +  +G     +                               
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADD 778

Query: 706 CEGL--------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            + +                          T +  +   Y +  +     +  RGG G  
Sbjct: 779 ADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIR 838

Query: 740 VPKG--FPRSGKFLS 752
                     GK ++
Sbjct: 839 ATDTSKTDEIGKLVA 853



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 807 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 866

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 867 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 919


>gi|254704388|ref|ZP_05166216.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
          Length = 934

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 263/855 (30%), Positives = 411/855 (48%), Gaps = 114/855 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KI 705
           +  +     R   GVR  +  +G     +                               
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADD 778

Query: 706 CEGL--------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            + +                          T +  +   Y +  +     +  RGG G  
Sbjct: 779 ADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIR 838

Query: 740 VPKG--FPRSGKFLS 752
                     GK ++
Sbjct: 839 ATDTSKTDEIGKLVA 853



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 807 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 866

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 867 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 919


>gi|256061183|ref|ZP_05451335.1| DNA gyrase subunit A [Brucella neotomae 5K33]
          Length = 934

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 263/855 (30%), Positives = 411/855 (48%), Gaps = 114/855 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KI 705
           +  +     R   GVR  +  +G     +                               
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADD 778

Query: 706 CEGL--------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            + +                          T +  +   Y +  +     +  RGG G  
Sbjct: 779 ADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIR 838

Query: 740 VPKG--FPRSGKFLS 752
                     GK ++
Sbjct: 839 ATDTLKTDEIGKLVA 853



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK       LK     K+  +  V G D + +V
Sbjct: 807 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKLVALFPVEGSDQILLV 866

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 867 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 919


>gi|326570224|gb|EGE20269.1| DNA gyrase subunit A [Moraxella catarrhalis BC8]
          Length = 888

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 236/827 (28%), Positives = 399/827 (48%), Gaps = 96/827 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G D+   +
Sbjct: 1   MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L++GQGNFG++DGD  AA RYT
Sbjct: 61  LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M ++   +L  +D++ VD+ D Y+     P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  ++P IS ++L+ +I GPDFPTGG I+  R  I+++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGG-IIHGRSGIIDAYRTGKGRLHI 239

Query: 253 RARWCVEEVGR-----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E +G          I+ T+IPYQV K+ LI+ IA+L+ AK+I  + +IRDES +
Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V     R  + ++++ ++F  + +ET F +NM  L     P++M L  ++  ++ H
Sbjct: 300 EGVRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALD-NGQPKLMTLRDLVAAFIRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
           R+EV+ RR+ F +     R  +L+GL IA  NID+I+  I+                   
Sbjct: 359 RQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQS 418

Query: 416 --------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                              +R+ L+ +QV+AIL+++L  L  LE
Sbjct: 419 AGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E   +L E  ++  +L+        +  E+ ++++ F        R+T   +  
Sbjct: 479 QDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDE-----RKTDIVD-- 531

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
            A     ++ +I ++ + + +S  G+         ++ K      SA   KE D ++  L
Sbjct: 532 -ARHDFNREDLIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLL 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY----D 609
              T   IL  +  G+ + L    +       +   +  LI+L  ++ +          D
Sbjct: 591 VTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDESVTAILPVNDLKD 650

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               +   ++ G    V  S+       G   + ++  + +  V    G+  + +     
Sbjct: 651 ENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEG 710

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSY------KDGGIS---------------DVICFKIC 706
           K + F    I  MSR  KGVR           +  +                 V      
Sbjct: 711 KAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFAVSRVVSLVVAP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    + +    + +           RGG G +  K   R+G+ + +
Sbjct: 771 KQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKA 817



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 5/116 (4%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKV 656
            +V+  V     ++L     G        +     R GK  + + + E+    +K +   
Sbjct: 762 RVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAVT 821

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             + V ++ +   L+   + QI    R  +GV+L    D  +   +     +    
Sbjct: 822 GEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVGMACVEHDDDEI 877


>gi|257437728|ref|ZP_05613483.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165]
 gi|257200035|gb|EEU98319.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165]
          Length = 854

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 231/745 (31%), Positives = 374/745 (50%), Gaps = 18/745 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            ++  +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G D   A++KSA  VG
Sbjct: 19  DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVG 78

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V+G  HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  AAYRYTEARM+++A
Sbjct: 79  AVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMA 138

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  +D+D +D+   ++E   EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ 
Sbjct: 139 VEMLTDIDKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVI 198

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +A I++P+I +  L+E+I GPDFPT G I+  R  I  +Y  GRG   +R R  +EE
Sbjct: 199 DGCVAYIEDPDIDLPGLMEHIKGPDFPTAG-IIMGRSGIRAAYATGRGKITLRGRATIEE 257

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
              G   I+VTEIPY V K+RLIE IA+L+  KRI  + D+ DE+      ++    +  
Sbjct: 258 KKNGRAQIIVTEIPYMVNKARLIENIADLVKEKRIEGISDLNDETNRKGMRIVIDVRKDA 317

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +P +++  ++  + ++    + M  +   +VP+VM L  ++++++  + EV+ RR+ + +
Sbjct: 318 NPQVVLNQLYQYTQLQDTVGVIMLAIDH-KVPKVMTLKQMIQKYVEFQDEVVRRRTQYDL 376

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED----KPKPVMVSRFSLTENQVDAILNLRL 436
           +    R  IL+GL  A   +DE+IA IR       + K  ++ +F   + Q DAI+ L+L
Sbjct: 377 KKARERAHILEGLKKATDIVDELIATIRACKGGMSEAKAAIMEQFGFDDPQADAIVKLQL 436

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L  LE  +I+ EL +L A+    + +L    +    +  E+ E+K  F          
Sbjct: 437 GRLAGLEILKIEEELGSLNAKIRDWEEILADDARVLEIVKSELLEMKRRFGDDRRTEIET 496

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
            T         A  Q      E   +    +   ++ K     +S +  KE D ++    
Sbjct: 497 VTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIVQEMFV 556

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAFV-----YD 609
             T D +L ++  G+ + +    +  G    +      L+ L   + +           +
Sbjct: 557 GSTHDYVLFVTDKGRLFRIKGYTIAEGSRTSKGTNIVNLLQLAEGEKVTNMLCQSKDTAN 616

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENR 668
               + +V+ +G        +     + G   + ++  + +      +G D + V   N 
Sbjct: 617 EGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNG 676

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           + + F+ +    M R G GVR     +G     +C    E  T +        R  +   
Sbjct: 677 QAIRFNEEDARPMGRSGHGVRAIKLAEGDEVVGVCIC-RENATILTVTENGKGRRSDIDT 735

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  RGG G           K  +
Sbjct: 736 YRITARGGKGIRNYDASK--DKVAA 758



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 4/174 (2%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L  +   EGD+L         D +++ + +G+A      +       G      I L  
Sbjct: 645 GLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPMGRSG-HGVRAIKLAE 703

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVT 657
             ++V   +      +L V+  G     +        R GK       S++K+  V  V 
Sbjct: 704 GDEVVGVCICRENATILTVTENGKGRRSDIDTYRITARGGKGIRNYDASKDKVAAVKIVD 763

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
                ++      ++    ++IP  SR G GVR+    +     V+     +  
Sbjct: 764 DVDDVLLSSQEGIIIRLHANEIPVQSRYGSGVRVMRLGENDKVMVLARTDHDDE 817


>gi|308062028|gb|ADO03916.1| DNA gyrase subunit A [Helicobacter pylori Cuz20]
          Length = 826

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 256/763 (33%), Positives = 406/763 (53%), Gaps = 25/763 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNLINETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK-----EPITVVISNRGWIRSLKSHS 537
           KE FS      +RRT   EV          A             V   +           
Sbjct: 478 KEQFS-----SQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               + +  E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI 
Sbjct: 533 KGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASRIAMGKAIVNLIS 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L+ ++ I+       +     L   + KG       SE  +N   G   + +   +++  
Sbjct: 593 LDPDEKIMATLSTKDFSDERSLAFFTKKGVVKRTNLSEFDSNY-NGMRAIVLDEGDELVS 651

Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
              V  +  H+ +       + FS++ + E+ R  +GV      +            +  
Sbjct: 652 AKIVDKNAKHLLIASYLGLFIKFSLEDVREIGRSTRGVIGIKLNENDFVVGAVVINDDSN 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +     +           RGG G +  K   ++G  +S
Sbjct: 712 KLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVS 754



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 594 IDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK--- 649
           I LN N  +V    + D + KLL VS  G             +R GK  + +   +K   
Sbjct: 692 IKLNENDFVVGAVVINDDSNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGN 751

Query: 650 MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQSYKDGGI 697
           +  V+ V  +   + ++  + K++  SI  I E   R   GV+L    D  +
Sbjct: 752 LVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTADKVV 803


>gi|49474366|ref|YP_032408.1| DNA gyrase subunit A [Bartonella quintana str. Toulouse]
 gi|49239870|emb|CAF26268.1| DNA gyrase subunit a [Bartonella quintana str. Toulouse]
          Length = 925

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 267/855 (31%), Positives = 421/855 (49%), Gaps = 117/855 (13%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++ N L E +    ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDFNPLPERDVLTGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++
Sbjct: 61  NEMGLAFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V+E +L  +D+D VDF+D Y+  D EPVV P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGRDREPVVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A +ALID+P I+++K++E I GPDFPTGGII+     I  
Sbjct: 181 GIAVGMATNIPPHNLGEVVDACIALIDDPNIALDKIIEIIPGPDFPTGGIIL-GHSGIRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE+  G   I+V+EIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVDIEEMHNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    + +  ++++  ++  + ++T F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRDGYRVVIELKKDVIAEVVLNQLYRYTLLQTSFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------- 412
           + +++ R EV+ RR+ + ++    R  +L GL +A  NIDEIIA+IR             
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKASDPQIARSQLM 418

Query: 413 --------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWLAADVASLIKLIDDPRHIIYGDNTYNLSEEQARAILELRLQRLTALGRDEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +      +L S  +  + +  E+  ++E F+       RRT F   S        +
Sbjct: 479 KIGVDIADYLHILASRSRIMSIVKDELNVLREAFATP-----RRTIFGFGSAEMDC---E 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+I+          +      S +  K+ D +      +T   +L
Sbjct: 531 DLIAPEDMVVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTHLFVVNTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             ST G  Y      L   + +  G A+  ++ L   + I T               ++ 
Sbjct: 591 FFSTRGIVYKEKVWRLPIGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            +++G     + S+ +   R GK  +K+  E+++  V   T  D V +   N + + F +
Sbjct: 651 ATTRGTVRRNKLSDFVQVNRNGKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPV 710

Query: 676 DQIPEM-SRGK-GVRLQSYKDGGISDVICF--------------------------KICE 707
            ++     R   GVR  +  +G     +                               E
Sbjct: 711 VEVRIFAGRNSVGVRGINLTNGDKVISMTLLEHVEATSVERSAYIKRVIHERRAAGADAE 770

Query: 708 GLTW---------------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            +                             +  +   Y +  +     +  RGG G   
Sbjct: 771 DILVLDENDVGTETELTDERYAELNAREQMLLTLSEFGYGKRSSSYEFRISGRGGKGIRA 830

Query: 741 --PKGFPRSGKFLSS 753
             P      GK +++
Sbjct: 831 TDPSKTAEIGKLVAA 845



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              LL +S  G        E   + R GK        K +   K+     V   D + +V
Sbjct: 798 EQMLLTLSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            +  +L+   +D I    R  KGV++ +  +G     +
Sbjct: 858 SDGGQLIRVPVDGIRIGGRSTKGVKIFNTAEGKKVVSV 895


>gi|154248237|ref|YP_001419195.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2]
 gi|154162322|gb|ABS69538.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2]
          Length = 914

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 263/851 (30%), Positives = 408/851 (47%), Gaps = 108/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M              +++ VS+   L   YL YA+S I  RA+PD+RDG KPVHRRI+ +
Sbjct: 1   MADSETPKPGGEPPSDIRPVSITEELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G ++  +++KSAR+VG+VIGK HPHGDQSVYD+LVR+AQ F  R PL+ GQGNFG+
Sbjct: 61  MHENGYEWNKSYRKSARVVGDVIGKYHPHGDQSVYDALVRMAQTFAMRLPLVDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD+ AA RYTE R+ +V   +L  +D+D VDF+D Y+  + EP V P+KFPNLL NG 
Sbjct: 121 VDGDAPAAMRYTEVRLEKVTNALLDDLDKDTVDFQDNYDNSEHEPTVLPAKFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ EI +  +AL+D+P +  E LL+ + GPDFPTG  ++  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEIVDTTVALLDDPTLEPEALLDLLPGPDFPTGA-LILGRTGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +RA+  +E + +    ++VTEIPYQV K+ +IEK+AEL+  KRI  + +
Sbjct: 240 QAYLTGRGSILMRAKVAIENIRKEREALIVTEIPYQVNKATMIEKMAELVRDKRIEGIAE 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  D   V+    R    D+++ +++ L+ ++T F +NM  L  G  P V+ L  +
Sbjct: 300 IRDESDRDGMRVVIEIKRDAQADVVLNNLYRLTLLQTSFGVNMVAL-SGGKPGVLTLHDV 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------- 412
           L  ++A R EV+ RR+ F ++    R  +L GL IA  NIDE+I +IR            
Sbjct: 359 LTAFIAFREEVISRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRLIRTAPDPASAREAL 418

Query: 413 ---------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                 K      + L+  Q  AIL+LRL+ L  L   +I  EL
Sbjct: 419 MARDWPAKDMAPLIALIADPRHKLGPDDTYRLSFEQARAILDLRLQRLTALGRDEIAEEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  E      +L S  +    +  E+  +KE F        RRT   E          
Sbjct: 479 DKLAVEIADYLDILASRPRMRAIVRAELIAIKEEFGTP-----RRTEIVE---GFGDLED 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+I+          +      SA+  ++ D +     A T   +
Sbjct: 531 EDLIQREEMVVTVSHAGYIKRVPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPV 590

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G+ Y L    L   + +  G+A+  ++ L  ++ I +  +           +++
Sbjct: 591 LFFSSKGQVYKLKVWRLPLAAPQARGKALINILPLEQDERITSVVLLPEDSDENERLQIM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFS 674
             ++ G       ++     R GK  +K++  E +  V   T  D V +       + F 
Sbjct: 651 FATTGGTVRRNALTDFQQVNRNGKIAMKLNEGEAIADVGLCTEDDDVLLTTAAGACIRFP 710

Query: 675 IDQIPE-MSRGK-GVRLQSYKDGGISDVIC------------------------------ 702
           +  +     R   GVR    +DG     +                               
Sbjct: 711 VTDVRVFKGRDSVGVRGIRLEDGDTIISMAIIGHVDASAEERLAYIKRRRALAGEATEAG 770

Query: 703 -FKICEGLT-------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +  EG +                    +  +   Y +  +     +  RGG G +   
Sbjct: 771 DVEAEEGASGNGHLGQDRYAEMGAKEQFILTVSENGYGKRTSSYEYRVTGRGGKGIVAMA 830

Query: 743 GFPRSGKFLSS 753
              R+G+ ++S
Sbjct: 831 VNERNGRLVAS 841



 Score = 71.0 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 16/112 (14%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSS-EEKMKLVVKVTG-DHVA 662
           +      +L VS  G        E     R GK    + V+    ++     V   D + 
Sbjct: 792 MGAKEQFILTVSENGYGKRTSSYEYRVTGRGGKGIVAMAVNERNGRLVASFPVEDQDQIM 851

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +V +  +L+   +D I  + R                VI F   EG   +  
Sbjct: 852 LVTDGGQLIRCPVDGIRIVGRAS------------QGVIVFDTAEGERVVSV 891



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 56/239 (23%), Gaps = 58/239 (24%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
            ++ +T G      A  L   +      ++ + LN  + I    +      +L+ ++ G 
Sbjct: 648 QIMFATTGGTVRRNA--LTDFQQVNRNGKIAMKLNEGEAIADVGLCTEDDDVLLTTAAGA 705

Query: 623 AFIVEESE---IIANTRKGKTFLKVSSEEKMKLVVKVT---------------------- 657
                 ++          G   +++   + +  +  +                       
Sbjct: 706 CIRFPVTDVRVFKGRDSVGVRGIRLEDGDTIISMAIIGHVDASAEERLAYIKRRRALAGE 765

Query: 658 -------------------GDH-----------VAVVGENRKLLIFSIDQIPEMSRG-KG 686
                              G             +  V EN      S  +     RG KG
Sbjct: 766 ATEAGDVEAEEGASGNGHLGQDRYAEMGAKEQFILTVSENGYGKRTSSYEYRVTGRGGKG 825

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           +   +  +     V  F + +    +                 +  R   G +V     
Sbjct: 826 IVAMAVNERNGRLVASFPVEDQDQIMLVTDGGQLIRCPVDGIRIVGRASQGVIVFDTAE 884



 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  IL +S +G      +         G+ I  +     N  +V +F  +   +++
Sbjct: 792 MGAKEQFILTVSENGYGKRTSSYEYRVTGRGGKGIVAMAVNERNGRLVASFPVEDQDQIM 851

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +V+  G         I    R   G      +  E++  V  ++ D
Sbjct: 852 LVTDGGQLIRCPVDGIRIVGRASQGVIVFDTAEGERVVSVEHISDD 897


>gi|319407150|emb|CBI80788.1| DNA gyrase subunit A [Bartonella sp. 1-1C]
          Length = 922

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 268/855 (31%), Positives = 423/855 (49%), Gaps = 117/855 (13%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++  T  E +    ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F  +++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +VAE +L  +D++ VDF+D Y+  + EP+V P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALID+P I++++++E I GPDFPTGGII+  R  +  
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDSPNITLDEIIEIIPGPDFPTGGIIL-GRSGVRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE+      I+V+EIPYQ+ K+ +IEKIAEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + +++ R EV+ RR+ + ++    R  +L GL IA  NIDEIIA+IR    P+       
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLM 418

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWLAADVAPLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +  +   +L+S  +    +  E+  ++E F        RRT F      +     +
Sbjct: 479 KIGVDITEYLHILSSRLRIMGIVKDELSTLREEFVTP-----RRTVFG---FGNAEMNNE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+I+          +      S +  K+ D +     ++T   +L
Sbjct: 531 DLIVPEDMVVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G A+  ++ L   + I T               ++ 
Sbjct: 591 FFSSRGIVYKEKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEAGWSELDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            +++G     + S+ I   R GK  +K+  E+++  V   T  D V +   N + + F +
Sbjct: 651 ATTRGTVRRNKLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPV 710

Query: 676 DQIPE-MSRGK-GVRLQSYKDGGIS----------------------------------- 698
             +   + R   GVR  +  DG                                      
Sbjct: 711 IDVRIFVGRNSVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRSAGADTE 770

Query: 699 DVICFKICEG------------------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           DV+     E                      +  +   Y +  +     +  RGG G   
Sbjct: 771 DVVIVDENEDGDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRA 830

Query: 741 --PKGFPRSGKFLSS 753
             P      GK +++
Sbjct: 831 TDPNKTVEIGKLVAA 845



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 8/107 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE-----KMKLVVKVTG-DHVAVV 664
              LL VS  G        E   + R GK        +     K+     V   D + +V
Sbjct: 798 EQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPNKTVEIGKLVAAFPVEAQDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
            +  +L+   I+ I    R  KGV + +   G  +  V      E  
Sbjct: 858 SDGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISDPEDD 904


>gi|49475756|ref|YP_033797.1| DNA gyrase subunit A [Bartonella henselae str. Houston-1]
 gi|49238563|emb|CAF27803.1| DNA gyrase subunit a [Bartonella henselae str. Houston-1]
          Length = 931

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 267/855 (31%), Positives = 420/855 (49%), Gaps = 117/855 (13%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++ N   E +    ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDLNPHPERDVMAGIEPVSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++
Sbjct: 61  NEMGLSFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V+E +L  +D+D VDF+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A +ALIDNP+I+++K++E I GPDFPTGGII+     +  
Sbjct: 181 GIAVGMATNIPPHNLGEVLDACIALIDNPDITLDKIIEIIPGPDFPTGGIIL-GHSGVRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE   G   I+V+EIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVDIEETRNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    R +  D+++  ++  + ++T F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRDGYRVVIELKRDVIADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + +++ R EV+ RR+ + ++    R  +L GL +A  NIDEIIA+IR    P+       
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARIKLM 418

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWPAADVAPLIKLIDDPRHIIHADNTYNLSEEQARAILELRLQRLTALGRDEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +      +L S  +  + I  E+  ++E F+       RRT F   S        +
Sbjct: 479 KIGVDITDYLHILASRSRIMSIIKDELNVLREAFATP-----RRTVFGFGSAEMDC---E 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+I+          +      S +  K+ D +      +T   +L
Sbjct: 531 DLIAPEDMVVTVSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVVNTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             ST G  Y      L   + +  G A+  ++ L   + I T               ++ 
Sbjct: 591 FFSTRGIVYKEKVWRLPLGTPQSRGRALINMLPLQQGERITTIMPLPEDEARWSALDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            +++G     + S+ +   R GK  +K+  E+++  V   T    V +     + + F +
Sbjct: 651 ATTRGTVRRNKLSDFVQINRNGKIAMKLDEEDEILSVETCTERHDVVLTTAKGQCIRFPV 710

Query: 676 DQIPEM-SRGK-GVRLQSYKDGGIS----------------------------------- 698
            ++     R   GVR  +  +                                       
Sbjct: 711 VEVRVFAGRNSVGVRGINLANDDKVISMTILEHVEATSVERSAYIKRVINERRAAGSDAE 770

Query: 699 DVICFKICEGLT------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           D++     +                      +  +   Y +  +     +  RGG G   
Sbjct: 771 DLVTLDEEDEAVDTELTEGRYLELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRA 830

Query: 741 --PKGFPRSGKFLSS 753
             P      GK +++
Sbjct: 831 TDPSKTAEIGKLVAA 845



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 10/117 (8%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              LL VS  G        E   + R GK        K +   K+     V   D + +V
Sbjct: 798 EQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKICEGLTWIDSAGR 717
            +  +L+   ++ I    R  KGV + +  +G        I     +     D   +
Sbjct: 858 SDGGQLIRVPVEGIRIAGRSTKGVTIFNTAEGEKVVSVERISESEDDDNQLDDETEK 914


>gi|225627572|ref|ZP_03785609.1| DNA gyrase, A subunit [Brucella ceti str. Cudo]
 gi|225617577|gb|EEH14622.1| DNA gyrase, A subunit [Brucella ceti str. Cudo]
          Length = 934

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 263/855 (30%), Positives = 411/855 (48%), Gaps = 114/855 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KI 705
           +  +     R   GVR  +  +G     +                               
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADD 778

Query: 706 CEGL--------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            + +                          T +  +   Y +  +     +  RGG G  
Sbjct: 779 ADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIR 838

Query: 740 VPKG--FPRSGKFLS 752
                     GK ++
Sbjct: 839 ATDTSKTDEIGKLVA 853



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 807 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 866

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 867 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 919


>gi|51473276|ref|YP_067033.1| DNA topoisomerase IV subunit A [Rickettsia typhi str. Wilmington]
 gi|81390282|sp|Q68XU1|PARC_RICTY RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|51459588|gb|AAU03551.1| DNA topoisomerase IV subunit A [Rickettsia typhi str. Wilmington]
          Length = 737

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 361/742 (48%), Positives = 520/742 (70%), Gaps = 10/742 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT++  L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTEICMLLMKDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A L LIDNP+  +  ++ +I GPDFPTGGII++  + I  +Y  GRG FR
Sbjct: 181 PPHNLHELCDALLYLIDNPQAGVNDIMNFIKGPDFPTGGIIIDQTKVINAAYTTGRGSFR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+  IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLISSIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNIVEILQEFLVHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I +R+EILK L I YLN+DEII IIR ED+PK +++ RF ++E QV+ I
Sbjct: 361 ITRRSTYLLNKIKQRLEILKVLKIVYLNLDEIIEIIRREDEPKTIIMERFKISEIQVEVI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLR+L+KLEE+ I  E  NL  ++  ++ +L + K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRALQKLEEHAIIDEHSNLQKQQAILEKILKNHKELWKIVKKEIKSVQTQFGLNTI 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV   ++     A I KEPIT++ S  GWIR LK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVDLTNQVIDITAFITKEPITIICSKMGWIRLLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  + A+TTD+IL++S+ G+ +TL A N+  G+G   +I+LL+D+ +N DI    VY   
Sbjct: 541 KFIIEAYTTDKILIISSKGRFFTLLADNISKGKGTAVSIKLLVDIGNN-DITNILVYKPY 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E+IA T+ GK  + +         + V G+ +A + E+R+LL
Sbjct: 600 QLLLLASSIGKGFLVNSNEVIAQTKAGKQIMNIPEGYACITCLPVNGNSIACINESRRLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG--- 728
           IF+I++IPEM +G+GV LQ +K+  + D+  F   +GL+W D       +          
Sbjct: 660 IFNINEIPEMKKGQGVVLQRFKNAKLLDIKIFNKEDGLSWND------GKKIQLEKNIVA 713

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
           +LGKRG  G+L P GFP++ +F
Sbjct: 714 FLGKRGSAGTLPPIGFPKNNRF 735


>gi|31791183|ref|NP_853676.1| DNA gyrase subunit A [Mycobacterium bovis AF2122/97]
 gi|31616768|emb|CAD92868.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium bovis AF2122/97]
          Length = 838

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 224/776 (28%), Positives = 387/776 (49%), Gaps = 39/776 (5%)

Query: 6   ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++++    ++    ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 1   MTDTTLPPDDSLDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMF 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 61  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 121 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ +A          + E ++  ++  + GPDFPT G ++   + 
Sbjct: 181 IAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAG-LIVGSQG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + L
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVD-GVPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---K 414
           D +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     +
Sbjct: 359 DQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 419 AGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E+ E+ +          RRT       AD     + +I +E + V I+  G+ +   
Sbjct: 479 VRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKRTK 530

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
                  K     +     K+ D +       T D IL  +T G+ Y   A +L      
Sbjct: 531 TDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRT 590

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y     L++ +  G     + +   +N   G   
Sbjct: 591 ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTAFDSNRSGGIVA 650

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGI 697
           + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   +     
Sbjct: 651 VNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +   + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 711 LLSLNV-VREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 84.1 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 6/158 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
               D +LL+S +G++    A +      G   +    +  N +  +++  V      LL
Sbjct: 665 CSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLL 724

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLL 671
           V +S G A      E     R GK  L V       ++   + V  D  +  V     ++
Sbjct: 725 VATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVI 784

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 785 RTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 44.8 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 5/142 (3%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F   D L           +L+ ++ G A              
Sbjct: 687 DEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRG 746

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
           G+ +  ++       +V A + D   +L  V+S G        ++    R  KG   + +
Sbjct: 747 GKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNL 806

Query: 645 SSEEKMKLVVK---VTGDHVAV 663
              + +  + +    +GD  AV
Sbjct: 807 GEGDTLLAIARNAEESGDDNAV 828


>gi|254701844|ref|ZP_05163672.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
          Length = 934

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 263/855 (30%), Positives = 411/855 (48%), Gaps = 114/855 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KI 705
           +  +     R   GVR  +  +G     +                               
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADD 778

Query: 706 CEGL--------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            + +                          T +  +   Y +  +     +  RGG G  
Sbjct: 779 ADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIR 838

Query: 740 VPKG--FPRSGKFLS 752
                     GK ++
Sbjct: 839 ATDTSKTDEIGKLVA 853



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 807 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 866

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 867 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 919


>gi|256255073|ref|ZP_05460609.1| DNA gyrase subunit A [Brucella ceti B1/94]
          Length = 934

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 262/855 (30%), Positives = 410/855 (47%), Gaps = 114/855 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+I  HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNILPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KI 705
           +  +     R   GVR  +  +G     +                               
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADD 778

Query: 706 CEGL--------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            + +                          T +  +   Y +  +     +  RGG G  
Sbjct: 779 ADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIR 838

Query: 740 VPKG--FPRSGKFLS 752
                     GK ++
Sbjct: 839 ATDTSKTDEIGKLVA 853



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 807 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 866

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 867 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 919


>gi|109947505|ref|YP_664733.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba]
 gi|109714726|emb|CAJ99734.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba]
          Length = 831

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 251/759 (33%), Positives = 402/759 (52%), Gaps = 15/759 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM+E+G
Sbjct: 1   MQDYLINETKNIVEVGIDCSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMNELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   + ++LE+I GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLENPNAELNEVLEFIKGPDFPTGG-IIYGKVGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L  +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTAMETTFSI-ILLAIYNKEPKIFTLLELLHLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+  + P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNTLMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL   ++++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDELNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE FS       + +          A     +       V   +               +
Sbjct: 478 KEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLS 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
               EGD ++    A+T D +L ++  G+ Y L    +        G+AI  LI L  ++
Sbjct: 538 GSTYEGDFIESFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDE 597

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKV 656
            I+       +     L   +  G       SE  +N    G   + +   +++     V
Sbjct: 598 KIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEYDELVSAKIV 657

Query: 657 TGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             +  H+ +   +   + F ++ + E+ R  +GVR     +            +    + 
Sbjct: 658 DKNSKHLLIASHSGTFIKFPLEDVREIGRSARGVRGIRLNENDFVIGAVVISDDHNKLLS 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +     +           RGG G +  K   ++G  + 
Sbjct: 718 VSENGLGKQTLAESYREQARGGKGVIGMKLNKKTGNLVG 756



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 6/208 (2%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            +   V  +N     S +S+S   + +  +  + +   +    +  +L+ S  G     P
Sbjct: 618 TKNGVVKRTNLSEFGSNRSYSGIRAIVLDEYDELVSAKIVDKNSKHLLIASHSGTFIKFP 677

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             ++         ++ +    ++  I    + D   KLL VS  G              R
Sbjct: 678 LEDVREIGRSARGVRGIRLNENDFVIGAVVISDDHNKLLSVSENGLGKQTLAESYREQAR 737

Query: 637 KGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
            GK  + +   +K   +  ++ V  +   + ++  + K++  SI  I E  R   GV+L 
Sbjct: 738 GGKGVIGMKLNKKTGNLVGIISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLI 797

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRS 718
              D  +    C K  E       + + 
Sbjct: 798 DAADKVVYVNSCPKEEEPENLETPSTQK 825


>gi|33519927|ref|NP_878759.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus]
 gi|33504273|emb|CAD83165.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus]
          Length = 862

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 252/796 (31%), Positives = 398/796 (50%), Gaps = 63/796 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
             + + +  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM  +G  +  
Sbjct: 2   NDLAKEITPIYIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+VIGK HPHGD +VY+++VR+AQPF+ RY LI GQGNFG++DGD AAA R
Sbjct: 62  SYKKSARIVGDVIGKYHPHGDVAVYEAIVRMAQPFLMRYALIDGQGNFGSVDGDPAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  +L  ++++ VD+   Y+  +  P + P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMSKIANELLFDLEKETVDYELNYDGTEQIPEILPTRIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LA IDN +I+I+ L++YI GPDFP+  II + R  + E+Y  GRG  
Sbjct: 182 IPPHNLTEVINGCLAFIDNEDITIDSLMKYIPGPDFPSAAIINDYR-GLKEAYETGRGKI 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  +E ++  G   IV+ EIPYQ+ KSRL+EKIAEL+  KRI  + ++RDES +D 
Sbjct: 241 YIRARSEIETDIKTGRESIVIYEIPYQINKSRLLEKIAELVKTKRIEGIYNLRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++         ++++ +++ L+ ++  F +NM  L     P+ M L  IL  ++ HRR
Sbjct: 301 MRIVIDIKHDAISEIVLNNLYSLTSLQISFGINMVAL-HNGQPKTMSLKDILSAFVCHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNID-----------------EIIAIIRNEDK 412
            ++ RR  F ++    RV +L+GL++A  NID                 E+ + +   + 
Sbjct: 360 SIITRRIMFELKKASNRVHVLEGLIVALSNIDIVIALIQQTESITQANAELTSKLWESNN 419

Query: 413 PKPVMVSR--------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
              +                        +  T+NQ  AIL LRL  L  LE  ++  E +
Sbjct: 420 IINMRKKISVDLLHSGWLDASNIKKDSGYYFTKNQAQAILELRLHKLTHLEYEKLVIEYE 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           N+L + E +  +L +       I  E+  +KE ++       RRT   E   +      +
Sbjct: 480 NVLKKMENLICVLQNPSSLMGLIRQELVSIKEEYNDP-----RRTEISENIVS--NIDLE 532

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +  + V +S +G+          + K           KE D +   L A+T D +L
Sbjct: 533 NLINQRDVVVTLSYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVL 592

Query: 565 LLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
           L S  G+ Y +    L        G  I  L+ L+ N+ I        Y +  ++ + +S
Sbjct: 593 LFSNYGRIYWMKVYRLPKANKGSRGRPIINLLPLDTNERITVILPVQNYTTGHQVFMATS 652

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
            G        E       G   L +++ +++       GD  V +     K++ F   Q+
Sbjct: 653 SGFVKKTALMEFSRPRNVGIIALNLNNGDELIGADITNGDNEVMLFTAYGKVVRFQETQV 712

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             M R   GVR      G    V      +  + +      + +  N     L  R   G
Sbjct: 713 RSMGRSASGVRGVHLLQGDRV-VSLIIPKDQSSILTVTENGFGKRTNQSEYPLKSRAIQG 771

Query: 738 SLVPKGFPRSGKFLSS 753
            +  K   R+G  + +
Sbjct: 772 VISIKVTERNGNVVGA 787


>gi|226356185|ref|YP_002785925.1| DNA topoisomerase [Deinococcus deserti VCD115]
 gi|226318175|gb|ACO46171.1| putative DNA topoisomerase, ATP-hydrolyzing (DNA gyrase, subunit A)
           (DNA topoisomerase II) [Deinococcus deserti VCD115]
          Length = 811

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 237/760 (31%), Positives = 394/760 (51%), Gaps = 36/760 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V +   ++  ++ YA++ I +RA+PD+RDG KPV RRI++AM   GL       KS
Sbjct: 3   GIHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLLEGLYSNQKHAKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+ K HPHGD S+YD++VRLAQ +  RYP++  QGNFG+IDGD  AA RYTEAR
Sbjct: 63  ASVVGEVMKKYHPHGDSSIYDAMVRLAQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+VAE ++  ++++ VD +  Y+E   EP V P+  PNLL NG +GIAVGMAT+IP HN
Sbjct: 123 MTKVAEELIADLEKETVDLKPNYDETTEEPSVLPAAVPNLLINGATGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EIC   LA+ID+P ++++ L+E++ GPDFPTGG I  ++  I E+Y  G  G +VR +
Sbjct: 183 LTEICNGLLAMIDDPNLTLDGLMEHVTGPDFPTGGRI--TKTGIREAYATGHSGLKVRGK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-RIVLF 314
             +EE   G   I+++EIPYQV K+ LI+ I+ +  A +IP +  +RDES       ++ 
Sbjct: 241 ARIEE-KNGRNQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKDPVRIVV 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P L++  ++  + ++T + +    +  G  P+V+PL   ++ +L HR +V+ R
Sbjct: 300 ELKRGAIPTLVLNQLYKYTQLQTTYTVINLSIV-GGEPRVLPLLNTMQYFLDHRADVVTR 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           R+ + ++  + R  +L+GLL A  +IDE+I++IR  +         + RF LTE Q  AI
Sbjct: 359 RTRYDLRKAEERAHVLEGLLKALDHIDEVISLIRGSNTGAEARDALMVRFGLTEIQSQAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++++E D L    E + S+L   K  W +I  EIR +++ +     
Sbjct: 419 LDMRLQRLVGLEREKLQAEFDELQKTIEYLRSILGDEKLLWREIKKEIRAIRDNYGDE-- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------AL 543
              RR+T  E+        ++ +I  E + + ++  G+++  K  +              
Sbjct: 477 ---RRSTITELEED---IGKEDLIAVEDMVITMTKAGYLKRTKLDAYRAQGRGGRGSSGG 530

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL---IDLNHNQ 600
             +E D         T D +L  +  G+ +     +L       +   +      L  ++
Sbjct: 531 KLREEDVNTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDAKGTHIRNLLPSLREDE 590

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I +      +D     +  + KG       +E    T  G   + +   +++  V  V 
Sbjct: 591 NIASVLSVGGFDEPGCFIFATRKGVVKKTLITEYGNITSAGLIAINLQPGDELIGVGIVN 650

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKI----CEGLTW 711
             DHV +   N K + F  D++    R  +GV     ++G    V+   +     E    
Sbjct: 651 DIDHVVLATRNGKAMRFESDEVRATGRATQGVIGIRLREGEDDAVVSMALVPGGDEASEL 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  +     +           RGG+G +      ++GK +
Sbjct: 711 LAVSECGLGKRTPVGDYPAKGRGGMGVITLDVTEKTGKLV 750



 Score = 41.7 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 2/100 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            +S  G     P G+  +    G  +  L        +VT        +L+V++ KG   
Sbjct: 712 AVSECGLGKRTPVGDYPAKGRGGMGVITLDVTEKTGKLVTLARVAGNEELMVLTEKGTVI 771

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
                E+    R   G   + ++  + +     +  +   
Sbjct: 772 RTRVEEVRVTGRNAQGVKVINIAERDSVISAFPIRREDEL 811


>gi|319950291|ref|ZP_08024211.1| DNA gyrase subunit A [Dietzia cinnamea P4]
 gi|319436047|gb|EFV91247.1| DNA gyrase subunit A [Dietzia cinnamea P4]
          Length = 842

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 230/782 (29%), Positives = 392/782 (50%), Gaps = 45/782 (5%)

Query: 6   ISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    E    + ++ V ++  ++  Y+ Y++S I  RA+PD+RDG KPVHRRI++AM
Sbjct: 1   MTDTTLPPEAGGHDRIEPVDIQAEMQRSYIDYSMSVIVGRALPDVRDGLKPVHRRILYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G     ++ KSA+ V + +G  HPHGD ++YD+LVRLAQP+  RYP++ GQGNFG+ 
Sbjct: 61  WDNGYRPERSYVKSAKPVADTMGNYHPHGDSAIYDTLVRLAQPWAMRYPMVDGQGNFGSR 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D AAA RYTE +MT +A  +++ +D++ VDF+  Y+ + SEPVV PS+ PNLL NG+S
Sbjct: 121 GNDGAAAMRYTECKMTPLAMEMVRDIDKNTVDFQPNYDGKTSEPVVLPSRIPNLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT +P HN++E+ EA    +DNP+ S E+     +E I GPDFPT G IV   +
Sbjct: 181 GIAVGMATKMPPHNLREVAEAIYWCLDNPDASEEETLAACMERIKGPDFPTHGYIV-GDQ 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y  GRG  R+R +  +EE G     IV+TE+PY+V    +I  IAE +   +I  
Sbjct: 240 GIKDAYSTGRGSIRMRGKTSIEEEG-NRTVIVITELPYEVNPDNMILSIAEQLRDGKIAG 298

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           +  I DE S      ++    R     +++ +++  S ++T F  NM  +    VP+ + 
Sbjct: 299 ISKIDDESSDRVGLRIVVTLKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVD-GVPRTLA 357

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--- 413
           L+ +++ ++AH+ EV+ RR+ + +   ++R  IL+GL+ A   +DE+IA+IR  +     
Sbjct: 358 LNHLVRLYVAHQVEVIVRRTQYLLDEAEKRAHILRGLVKALDALDEVIALIRRSETVEIA 417

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  +     + ++Q  AIL+++LR L  LE  +I  +L  +  E      +L   ++Q  
Sbjct: 418 REGLKDLLEIDDDQAQAILDMQLRRLAALERQKIIDQLAAIELEIADYKDILAKPERQRA 477

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
            +  E+RE+ E +        RRT       AD     + +I +E + V I+  G+ +  
Sbjct: 478 IVGDELREIVEKYGD-----DRRTRII---PADGDVTDEDLIAREDVVVTITETGYAKRT 529

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
                   K     +     K+ D ++    + T D +L  +T G+ Y + A  L   + 
Sbjct: 530 RTDLYRAQKRGGKGVRGAELKQDDIVRHFFVSSTHDWLLFFTTKGRVYRIKAYELPEANR 589

Query: 584 RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+     + I        Y     L++ +  G        +  +    G  
Sbjct: 590 TARGQHVANLLAFQPEERIAGVIRIKSYQDAPYLVLATRNGLVKKSRLEDYDSPRSGGLI 649

Query: 641 FLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGG 696
            + +   +++         D + +V E  + + F  +   +  M R   GV    + DG 
Sbjct: 650 AVNLRDGDELVGAALAGPDDDLLLVSEKGQSIRFHANDDTLRPMGRATSGVMGMRFNDGD 709

Query: 697 ISDVICFKICEGLT-----WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +     +         + +  R Y++           RGG G L     P+ GK +
Sbjct: 710 ALLSMSVVRADTSDQEKYFLLVATERGYSKRTALSEYTAQGRGGKGVLTLMFDPKRGKLV 769

Query: 752 SS 753
            +
Sbjct: 770 GA 771



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 12/163 (7%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--- 612
           A   D +LL+S  G++    A +      G   +  + +  N    +++  V  +     
Sbjct: 665 AGPDDDLLLVSEKGQSIRFHANDDTLRPMGRATSGVMGMRFNDGDALLSMSVVRADTSDQ 724

Query: 613 ---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVT-GDHVAVVG 665
               LLV + +G +     SE  A  R GK  L +       K+     V   D +  + 
Sbjct: 725 EKYFLLVATERGYSKRTALSEYTAQGRGGKGVLTLMFDPKRGKLVGATIVELQDELYAIT 784

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            +  ++     Q+ +  R  KGVRL +  +G     I     E
Sbjct: 785 SSGGVIRTFAKQVRKAGRQTKGVRLMNLAEGDSLLAIARNADE 827


>gi|254719163|ref|ZP_05180974.1| DNA gyrase subunit A [Brucella sp. 83/13]
 gi|306838155|ref|ZP_07471011.1| DNA gyrase, A subunit [Brucella sp. NF 2653]
 gi|306406745|gb|EFM62968.1| DNA gyrase, A subunit [Brucella sp. NF 2653]
          Length = 934

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 262/855 (30%), Positives = 410/855 (47%), Gaps = 114/855 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A++   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KI 705
           +  +     R   GVR     +G     +                               
Sbjct: 719 VTDVRVFAGRNSIGVRGIKLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADD 778

Query: 706 CEGL--------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            + +                          T +  +   Y +  +     +  RGG G  
Sbjct: 779 ADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIR 838

Query: 740 VPKG--FPRSGKFLS 752
                     GK ++
Sbjct: 839 ATDTSKTDEIGKLVA 853



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 807 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 866

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 867 SDGGQLIRVPVDGIRIAGRSTKGVTIFNMADGEKVVSVERISDADSDE---ENGNG 919


>gi|148260212|ref|YP_001234339.1| DNA topoisomerase IV subunit A [Acidiphilium cryptum JF-5]
 gi|326402843|ref|YP_004282924.1| DNA topoisomerase IV subunit A [Acidiphilium multivorum AIU301]
 gi|146401893|gb|ABQ30420.1| DNA topoisomerase IV subunit A [Acidiphilium cryptum JF-5]
 gi|325049704|dbj|BAJ80042.1| DNA topoisomerase IV subunit A [Acidiphilium multivorum AIU301]
          Length = 744

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 392/735 (53%), Positives = 520/735 (70%), Gaps = 6/735 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+   L  AL ERYLAYALSTI  R++PD+RDG KPVHRR+I AM ++ LD G+ FKK 
Sbjct: 8   NVQDTKLATALSERYLAYALSTIMARSLPDVRDGLKPVHRRLIFAMRQLRLDPGSGFKKC 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD S+Y++LVRLAQ F  RYPLI GQGNFGNIDGD+AAA RYTE+R
Sbjct: 68  ARVVGDVMGKFHPHGDMSIYEALVRLAQDFASRYPLIEGQGNFGNIDGDNAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA  +L+G+DEDAVDFR TY+ ED+EPVV P  FPNLLANG +GIAVGMATSIP HN
Sbjct: 128 LTEVAAALLEGIDEDAVDFRPTYDNEDTEPVVLPGAFPNLLANGAAGIAVGMATSIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C AA+ LI +PE     LL+++ GPDFPTGG +VE R +++ +Y  GRG  RVRAR
Sbjct: 188 AAELCAAAIHLIRHPEADTAALLDFVQGPDFPTGGELVEDRATLLSAYETGRGSLRVRAR 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W   ++  G+W IVVTEIPYQVQKSRLIE++A+L+  +++PLL DIRDES E VRIVL P
Sbjct: 248 WSRSDLKGGAWQIVVTEIPYQVQKSRLIEQVAQLMAERKLPLLGDIRDESTERVRIVLEP 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++DPD+LM S+F  +  E RF +NMNVL   R P+VM L  +L+ WL HR EVL RR
Sbjct: 308 KSRTVDPDMLMASLFRATAFEQRFSMNMNVLDADRTPRVMGLREMLRAWLDHRHEVLERR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+ AI RR+EIL+G L  +LN+DE+I IIR ED+PKP +++ F+LT+ Q +AILN+R
Sbjct: 368 SRHRLAAIARRLEILEGYLAVFLNLDEVIRIIRTEDEPKPALIAAFTLTDTQAEAILNMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE +I+ E   L AE++ +D++L    ++W +I  EI    + F      G R
Sbjct: 428 LRSLRKLEEMEIRKEHKALTAERKALDAMLADPAKRWARIETEIEATAKTFG--GGPGAR 485

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RTT             +A++E+EP+TV++S +GWIR+LK H+V  + L FKEGD LK  L
Sbjct: 486 RTTISGAVPV-TEVAVEALVEREPLTVILSEKGWIRALKGHAVAEAELKFKEGDRLKALL 544

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              + DR+ + +T+G+ Y+L A +L  GRG G+AI+L++DL +  ++   F+ D   + L
Sbjct: 545 RCSSLDRVTVFATNGRVYSLRAADLPRGRGDGQAIRLMVDLGNEDEVAALFIADPEARYL 604

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V  + G  FI+  +E+ A  R GK  L V   ++  L  KV GDH+AV+G+NRKLL+F +
Sbjct: 605 VAGTDGRGFIIAGAELGAEKRTGKQILTVRPGQEAMLCRKVAGDHLAVIGQNRKLLVFPL 664

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +Q+PEM+RG GV LQ YKDGG++D   F +  GL+W     +   R+E  L  WLG RG 
Sbjct: 665 EQVPEMARGAGVILQKYKDGGLADAKAFTLASGLSWRLGDKQ---RTETRLAEWLGARGQ 721

Query: 736 VGSLVPKGFPRSGKF 750
            G L P GFPRSG F
Sbjct: 722 AGRLPPTGFPRSGTF 736


>gi|296113277|ref|YP_003627215.1| DNA gyrase subunit A [Moraxella catarrhalis RH4]
 gi|295920971|gb|ADG61322.1| DNA gyrase subunit A [Moraxella catarrhalis RH4]
 gi|326565271|gb|EGE15456.1| DNA gyrase subunit A [Moraxella catarrhalis 12P80B1]
 gi|326570961|gb|EGE20985.1| DNA gyrase subunit A [Moraxella catarrhalis BC7]
 gi|326573257|gb|EGE23225.1| DNA gyrase subunit A [Moraxella catarrhalis 101P30B1]
          Length = 888

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 236/827 (28%), Positives = 399/827 (48%), Gaps = 96/827 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G D+   +
Sbjct: 1   MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L++GQGNFG++DGD  AA RYT
Sbjct: 61  LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M ++   +L  +D++ VD+ D Y+     P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  ++P IS ++L+ +I GPDFPTGG I+  R  I+++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGG-IIHGRSGIIDAYRTGKGRLHI 239

Query: 253 RARWCVEEVGR-----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E +G          I+ T+IPYQV K+ LI+ IA+L+ AK+I  + +IRDES +
Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V     R  + ++++ ++F  + +ET F +NM  L     P++M L  ++  ++ H
Sbjct: 300 EGVRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALD-NGQPKLMTLRDLVAAFIRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
           R+EV+ RR+ F +     R  +L+GL IA  NID+I+  I+                   
Sbjct: 359 RQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQS 418

Query: 416 --------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                              +R+ L+ +QV+AIL+++L  L  LE
Sbjct: 419 AGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E   +L E  ++  +L+        +  E+ ++++ F        R+T   +  
Sbjct: 479 QDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDE-----RKTDIVD-- 531

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
            A     ++ +I ++ + + +S  G+         ++ K      SA   KE D ++  L
Sbjct: 532 -ARHDFNREDLIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLL 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY----D 609
              T   IL  +  G+ + L    +       +   +  LI+L  ++ +          D
Sbjct: 591 VTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKD 650

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               +   ++ G    V  S+       G   + ++  + +  V    G+  + +     
Sbjct: 651 ENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEG 710

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSY------KDGGIS---------------DVICFKIC 706
           K + F    I  MSR  KGVR           +  +                 V      
Sbjct: 711 KAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFAVSRVVSLVVAP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    + +    + +           RGG G +  K   R+G+ + +
Sbjct: 771 KQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKA 817



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 5/116 (4%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKV 656
            +V+  V     ++L     G        +     R GK  + + + E+    +K +   
Sbjct: 762 RVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAVT 821

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             + V ++ +   L+   + QI    R  +GV+L    D  +   +     +    
Sbjct: 822 GEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVGMACVEHDDDEI 877


>gi|253796921|ref|YP_003029922.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435]
 gi|297632474|ref|ZP_06950254.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN 4207]
 gi|313656772|ref|ZP_07813652.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN V2475]
 gi|253318424|gb|ACT23027.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435]
 gi|328456712|gb|AEB02135.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 4207]
          Length = 838

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 223/776 (28%), Positives = 387/776 (49%), Gaps = 39/776 (5%)

Query: 6   ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++++    ++    ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 1   MTDTTLPPDDSLDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMF 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 61  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 121 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ +A          + E ++  ++  + GPDFPT G ++   + 
Sbjct: 181 IAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAG-LIVGSQG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             ++Y+  RG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 240 TADAYKTSRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + L
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVD-GVPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---K 414
           D +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     +
Sbjct: 359 DQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 419 AGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E+ E+ +          RRT       AD     + +I +E + V I+  G+ +   
Sbjct: 479 VRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKRTK 530

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
                  K     +     K+ D +       T D IL  +T G+ Y   A +L      
Sbjct: 531 TDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRT 590

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y     L++ +  G     + ++  +N   G   
Sbjct: 591 ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVA 650

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGI 697
           + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   +     
Sbjct: 651 VNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +   + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 711 LLSLNV-VREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 6/158 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
               D +LL+S +G++    A +      G   +    +  N +  +++  V      LL
Sbjct: 665 CSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLL 724

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLL 671
           V +S G A      E     R GK  L V       ++   + V  D  +  V     ++
Sbjct: 725 VATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVI 784

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 785 RTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 44.8 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 5/142 (3%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F   D L           +L+ ++ G A              
Sbjct: 687 DEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRG 746

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
           G+ +  ++       +V A + D   +L  V+S G        ++    R  KG   + +
Sbjct: 747 GKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNL 806

Query: 645 SSEEKMKLVVK---VTGDHVAV 663
              + +  + +    +GD  AV
Sbjct: 807 GEGDTLLAIARNAEESGDDNAV 828


>gi|326561961|gb|EGE12294.1| DNA gyrase subunit A [Moraxella catarrhalis 46P47B1]
          Length = 872

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 236/827 (28%), Positives = 399/827 (48%), Gaps = 96/827 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G D+   +
Sbjct: 1   MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L++GQGNFG++DGD  AA RYT
Sbjct: 61  LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M ++   +L  +D++ VD+ D Y+     P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  ++P IS ++L+ +I GPDFPTGG I+  R  I+++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGG-IIHGRSGIIDAYRTGKGRLHI 239

Query: 253 RARWCVEEVGR-----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E +G          I+ T+IPYQV K+ LI+ IA+L+ AK+I  + +IRDES +
Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V     R  + ++++ ++F  + +ET F +NM  L     P++M L  ++  ++ H
Sbjct: 300 EGVRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALD-NGQPKLMTLRDLVAAFIRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
           R+EV+ RR+ F +     R  +L+GL IA  NID+I+  I+                   
Sbjct: 359 RQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQS 418

Query: 416 --------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                              +R+ L+ +QV+AIL+++L  L  LE
Sbjct: 419 AGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E   +L E  ++  +L+        +  E+ ++++ F        R+T   +  
Sbjct: 479 QDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDE-----RKTDIVD-- 531

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
            A     ++ +I ++ + + +S  G+         ++ K      SA   KE D ++  L
Sbjct: 532 -ARHDFNREDLIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLL 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY----D 609
              T   IL  +  G+ + L    +       +   +  LI+L  ++ +          D
Sbjct: 591 VTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKD 650

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               +   ++ G    V  S+       G   + ++  + +  V    G+  + +     
Sbjct: 651 ENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEG 710

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSY------KDGGIS---------------DVICFKIC 706
           K + F    I  MSR  KGVR           +  +                 V      
Sbjct: 711 KAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFAVSRVVSLVVAP 770

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    + +    + +           RGG G +  K   R+G+ + +
Sbjct: 771 KQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKA 817



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 6/110 (5%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKV 656
            +V+  V     ++L     G        +     R GK  + + + E+    +K +   
Sbjct: 762 RVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAVT 821

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI-SDVICFK 704
             + V ++ +   L+   + QI    R  +GV+L    D  +   + C +
Sbjct: 822 GEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVGMACVE 871


>gi|153009512|ref|YP_001370727.1| DNA gyrase subunit A [Ochrobactrum anthropi ATCC 49188]
 gi|151561400|gb|ABS14898.1| DNA gyrase, A subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 923

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 259/851 (30%), Positives = 408/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM 
Sbjct: 1   MNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PL+ GQGNFG+IDGD 
Sbjct: 61  LAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVDGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ ++ E IL  +D+D VDF+D Y+  + EPVV P++FPNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRLEKLTESILSDIDKDTVDFQDNYDGREQEPVVMPARFPNLLVNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALI+NP I +E+++E I GPDFPTGGII+  R  I  +Y  
Sbjct: 181 GMATNIPPHNLGEVIDGCVALIENPAIQLEEMIEIIPGPDFPTGGIIL-GRAGINSAYTT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES
Sbjct: 240 GRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIEGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++
Sbjct: 300 DREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLNLLDMLRAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P            
Sbjct: 359 AFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTTAREQLMERRW 418

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  
Sbjct: 419 PAVDVAPLIRLIDDPRHRINEDDTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E      +L+S  +    +  E+  V++ F+       RRT   E+         + +I 
Sbjct: 479 EIRDYLDILSSRLRVMTIVKDEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIA 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+I+          +      S +  K+ D +     A+T   +L  S+
Sbjct: 531 REDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSS 590

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G  Y      L   + +  G+A+  ++ L   + I T               ++  +++
Sbjct: 591 RGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEESWANLDVMFSTTR 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F +  +
Sbjct: 651 GTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDV 710

Query: 679 PEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KICEGL 709
                R   GVR  +  DG     +                                + +
Sbjct: 711 RVFAGRNSIGVRGINLADGDKVISMAILHHVDADASTRSAYLKRSIAERRAQGADDADDI 770

Query: 710 --------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                     T +  +   Y +  +     +  RGG G      
Sbjct: 771 VVVGEDVGTDAELTEELYQELKAREETVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDT 830

Query: 744 --FPRSGKFLS 752
                 GK ++
Sbjct: 831 SKTDEIGKLVA 841



 Score = 57.9 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V   D + +V
Sbjct: 795 EETVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDTSKTDEIGKLVALFPVEASDQILLV 854

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            +  +L+   +D I    R  KGV + +  DG     +
Sbjct: 855 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSV 892


>gi|188527452|ref|YP_001910139.1| DNA gyrase subunit A [Helicobacter pylori Shi470]
 gi|188143692|gb|ACD48109.1| DNA gyrase subunit A [Helicobacter pylori Shi470]
          Length = 826

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 252/758 (33%), Positives = 402/758 (53%), Gaps = 15/758 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNLINETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGG I+  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGG-IIYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+       IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + + +    + P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSI-ILLAIYNKEPKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKDALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE FS       +            A     +       V   +               +
Sbjct: 478 KEQFSSQRCTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLS 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
            +  E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI L  ++
Sbjct: 538 GNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASRIAMGKAIVNLISLAPDE 597

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       +     L   + KG       SE  +N   G   + +   +++     V 
Sbjct: 598 KIMATLSTKDFSDERSLAFFTKKGVVKRTNLSEFDSNY-NGMRAIVLDEGDELVSAKIVD 656

Query: 658 GD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            +  H+ +       + FS++ + E+ R  +GVR     +            +    +  
Sbjct: 657 KNAKHLLIASYLGIFIKFSLEDVREIGRTTRGVRGIRLNENDFVVGAVVISDDSNKLLSV 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     +           RGG G +  K   ++G  +S
Sbjct: 717 SENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 754



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 7/135 (5%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G        ++         ++ +    ++  +    + D + KLL VS  G        
Sbjct: 669 GIFIKFSLEDVREIGRTTRGVRGIRLNENDFVVGAVVISDDSNKLLSVSENGLGKQTLAE 728

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SR 683
                +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI  I E   R
Sbjct: 729 AYREQSRGGKGIIGMKLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIQDIKETIGR 788

Query: 684 -GKGVRLQSYKDGGI 697
              GV+L    D  +
Sbjct: 789 NTSGVKLIDTADKVV 803


>gi|148560594|ref|YP_001259021.1| DNA gyrase subunit A [Brucella ovis ATCC 25840]
 gi|148371851|gb|ABQ61830.1| DNA gyrase, A subunit [Brucella ovis ATCC 25840]
          Length = 934

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 262/855 (30%), Positives = 410/855 (47%), Gaps = 114/855 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  G G   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGHGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KI 705
           +  +     R   GVR  +  +G     +                               
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADD 778

Query: 706 CEGL--------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            + +                          T +  +   Y +  +     +  RGG G  
Sbjct: 779 ADDIVVIGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIR 838

Query: 740 VPKG--FPRSGKFLS 752
                     GK ++
Sbjct: 839 ATDTSKTDEIGKLVA 853



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 807 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 866

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 867 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 919


>gi|329119708|ref|ZP_08248388.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327464157|gb|EGF10462.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 929

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 235/853 (27%), Positives = 397/853 (46%), Gaps = 116/853 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++     +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDDTIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLVDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTE RM ++A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D PE  I++L+  +  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLTDTVNACLHLLDAPETDIDELINILQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      I++ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGDLVRDKTLEGIA 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L     P+++ L  
Sbjct: 300 DLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDE+I +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEK 418

Query: 420 ---------------------------------------RFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARAWRSSLVEDMLGRTDLDLRMARPEGLPANLGLQGEGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I  +  N++A+      +L   ++    I  E+ E+K  F              
Sbjct: 479 GLDQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEEIKTGFGDGRKS-------- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +  ++ +  V K  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEDDCLVGVAKTGGSDDIMLFSN 710

Query: 667 NRKLLIF----------------SIDQIP----------------EMSRGKGVR------ 688
             K + F                + + +                    +  GVR      
Sbjct: 711 LGKAIRFNEFWEKTGSDDAEETDNENDVSDDLSDSEDEEGGDTAAISGK-HGVRPSGRGS 769

Query: 689 ----LQSYKD-GGISDVICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                    + G I  +I F        L  + +    Y +           +GG G++ 
Sbjct: 770 GGLRGMRLPENGRIVSLITFAPECEQGDLQVLTATANGYGKRTPIADYSRKNKGGQGNIA 829

Query: 741 PKGFPRSGKFLSS 753
                R+G  +++
Sbjct: 830 INTGERNGDLVAA 842



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 10/137 (7%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-----TCKLLVVSSKGNAF 624
           G    +   + +   G G      + L  N  IV+   +         ++L  ++ G   
Sbjct: 751 GDTAAISGKHGVRPSGRGSGGLRGMRLPENGRIVSLITFAPECEQGDLQVLTATANGYGK 810

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE 680
               ++     + G+  + +++ E+   +     V   D + ++     L+   +DQI E
Sbjct: 811 RTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGESDDLMLITSGGVLIRTKVDQIRE 870

Query: 681 MSR-GKGVRLQSYKDGG 696
             R   GV+L +  +G 
Sbjct: 871 TGRAAAGVKLINLDEGE 887



 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/113 (11%), Positives = 29/113 (25%), Gaps = 11/113 (9%)

Query: 642 LKVSSEEKMKLVVKVT-----GD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--Y 692
           +++    ++  ++        GD  V     N       I      ++G +G    +   
Sbjct: 775 MRLPENGRIVSLITFAPECEQGDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 834

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           ++G +         + L  I S                  R   G  +     
Sbjct: 835 RNGDLVAATLVGESDDLMLITSG--GVLIRTKVDQIRETGRAAAGVKLINLDE 885



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   +  L++++S G
Sbjct: 799 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGESDDLMLITSGG 858

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
                +  +I    R   G   + +   E++  + +V  +
Sbjct: 859 VLIRTKVDQIRETGRAAAGVKLINLDEGEQLVSLERVAEE 898


>gi|306843965|ref|ZP_07476560.1| DNA gyrase, A subunit [Brucella sp. BO1]
 gi|306275720|gb|EFM57444.1| DNA gyrase, A subunit [Brucella sp. BO1]
          Length = 934

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 262/855 (30%), Positives = 410/855 (47%), Gaps = 114/855 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEI YQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEISYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KI 705
           +  +     R   GVR  +  +G     +                               
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADD 778

Query: 706 CEGL--------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            + +                          T +  +   Y +  +     +  RGG G  
Sbjct: 779 ADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIR 838

Query: 740 VPKG--FPRSGKFLS 752
                     GK ++
Sbjct: 839 ATDTSKTDEIGKLVA 853



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 807 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 866

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 867 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 919


>gi|296116241|ref|ZP_06834858.1| DNA topoisomerase IV subunit A [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977175|gb|EFG83936.1| DNA topoisomerase IV subunit A [Gluconacetobacter hansenii ATCC
           23769]
          Length = 740

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 359/731 (49%), Positives = 511/731 (69%), Gaps = 5/731 (0%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            +   +V+   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR+I AM ++ LD  +
Sbjct: 4   DVTRGHVENTKLVDALSERYLAYAMSTIMSRSLPDVRDGMKPVHRRMIFAMQQLRLDPTS 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG++DGD+AAA R
Sbjct: 64  GFKKCARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSVDGDNAAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+T+VA+ +L+G+++D+VDFR TY+ E+ EPVV P+ FPNLLANG +GIAVGMATS
Sbjct: 124 YTEARLTEVAKALLEGINDDSVDFRPTYDGEEHEPVVLPAAFPNLLANGAAGIAVGMATS 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV EIC AA+ LI +P++++ KLLE + GPDFPTG +IVE R++I  +Y  GRG F
Sbjct: 184 IPPHNVGEICAAAMLLIRDPDVTVAKLLEVMPGPDFPTGCMIVEDRDAIARAYETGRGSF 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R+RARW VE+   G+W IVVTEIPYQVQKSRLIE++A+L+  K++PLL DIRDES+ D+R
Sbjct: 244 RIRARWEVEQGRFGTWQIVVTEIPYQVQKSRLIEQVADLMEQKKLPLLGDIRDESSADIR 303

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL PK+R ++P++LME++F  + +E+RF LNMNVL   +VP V  L  +L+ WL HR +
Sbjct: 304 LVLEPKSRGIEPEVLMETMFRATQLESRFGLNMNVLGADQVPGVRSLKEVLQAWLDHRHD 363

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RR+  R+ A+DRR+EIL G L  YLN+DE+I IIR ED  +  +++ F L+E Q ++
Sbjct: 364 VLVRRTRHRLDAVDRRLEILDGFLAVYLNLDEVIRIIREEDDARASLMAAFDLSELQAES 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +LN+RLRSLR+LEE +I+ E   L  E+  + +L+     +W  I  EI+ +++ F   T
Sbjct: 424 VLNMRLRSLRRLEETEIRKEHAALTEERAGLLALMEKESLRWKHITSEIKGIQKKFGGGT 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
              RR T       A+        +E+EP++V++S +GWIR+++ H VD  A  FKEGD 
Sbjct: 484 LGARRSTLAA--PPAEVDISAALPVEREPLSVILSQKGWIRTVRGHGVDPEAQKFKEGDG 541

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L++ +   ++DR+   +TDG+A+TL A +L  GRG G+ ++L+I+L++ +DI+T F    
Sbjct: 542 LRLIVECQSSDRLCCFATDGRAFTLRAADLPRGRGDGQPLRLMIELSNEEDIITIFPVTQ 601

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
             + L+ SS G   IV E +++A  R GK  L +   E  ++     GDHV V+G N+++
Sbjct: 602 DARRLLASSAGRGMIVREEDMVAEKRTGKQVLNLKEGESAQVCALAQGDHVLVIGSNKRM 661

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L+F++ Q+PEM+RG GV LQ YK+G + D + F    G+ W D       R+ +D+   +
Sbjct: 662 LVFALTQLPEMTRGLGVALQKYKEGHLRDAVVFAGDAGVAWPDP---QRVRTLSDMKEQM 718

Query: 731 GKRGGVGSLVP 741
           GKRG +G   P
Sbjct: 719 GKRGDMGRPAP 729


>gi|256044756|ref|ZP_05447660.1| DNA gyrase subunit A [Brucella melitensis bv. 1 str. Rev.1]
          Length = 934

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 263/855 (30%), Positives = 411/855 (48%), Gaps = 114/855 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKLWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KI 705
           +  +     R   GVR  +  +G     +                               
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADD 778

Query: 706 CEGL--------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            + +                          T +  +   Y +  +     +  RGG G  
Sbjct: 779 ADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIR 838

Query: 740 VPKG--FPRSGKFLS 752
                     GK ++
Sbjct: 839 ATDTSKTDEIGKLVA 853



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 807 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 866

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 867 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 919


>gi|42525811|ref|NP_970909.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405]
 gi|41815861|gb|AAS10790.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405]
          Length = 815

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 231/759 (30%), Positives = 380/759 (50%), Gaps = 15/759 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     V  + +   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MEEIQTKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L      +K A+IVG+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD 
Sbjct: 61  LRSSGPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AAYRYTEA+M ++AE +++ + ++ VDF   +++   EP V P+KFP LLANG+SGIAV
Sbjct: 121 PAAYRYTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN++EI +A  A IDNPEI I++L +Y+ GPDFPTGG ++  R+ I ++++ 
Sbjct: 181 GMATNMPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGG-VIYGRKGIKQAFKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG   VR ++ +E   +G   IV TE+PYQV  + L+ +I EL   K I  + ++ DE 
Sbjct: 240 GRGKILVRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDET 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V+    R     +++  +F  + +++ F +    L     P+ + L  ++K +
Sbjct: 300 SDRTGLRVVIELKRGAITKVVLNQLFAKTALQSSFGVINLALV-NGRPETLNLKLLVKYF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRF 421
           + HR +V+ RR+ F ++  + R  IL+ L++A  NIDE+I IIR+   P+     ++ RF
Sbjct: 359 VEHRVDVVTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMERF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              + Q  AI++++L+ L  LE   ++ EL  L      +  LL   ++    I  E  E
Sbjct: 419 GFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNE 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-ITVVISNRGWIRSLKSHSVDL 540
           + E F              E++  D    ++ +I       +        +S        
Sbjct: 479 IAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGS 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
           ++++  E D L     A T D I+ ++  GKAY L    +           I+ L+ ++ 
Sbjct: 539 NSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIKSLLSVSS 598

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           +++I        +D    LL+ ++ G    V          +G   +K+   +K+   + 
Sbjct: 599 DEEITAVVSLKEFDDKTYLLMATAGGVVKKVTTDNFANAKTRGIIAIKLDEGDKLVSAIL 658

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G D + ++    + L  S + I    R  +GV                ++ E    + 
Sbjct: 659 TGGKDEIMLITRRGQALRTSEEDIRSQGRSSRGVTGIKLSSEDELT-GALRVTENQKMLV 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +           RG  G  +     ++G+ + 
Sbjct: 718 MTENGYGKRVEFSEFSAHGRGTGGQRIYTLSEKTGEVVG 756



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 7/181 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
            + +  + A+   EGD L  A+     D I+L++  G+A      ++ S       +   
Sbjct: 636 NAKTRGIIAIKLDEGDKLVSAILTGGKDEIMLITRRGQALRTSEEDIRSQGRSSRGV-TG 694

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEK 649
           I L+   ++  A       K+LV++  G    VE SE  A+ R   G+    +S    E 
Sbjct: 695 IKLSSEDELTGALRVTENQKMLVMTENGYGKRVEFSEFSAHGRGTGGQRIYTLSEKTGEV 754

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICE 707
           + L+     D V  +    K +  S+D +  M R  +GVR+   +    +  +      E
Sbjct: 755 VGLLTVFDDDEVVCITGQGKTIRISVDSVGTMGRSAQGVRILDIESPDMLIGLDVVARDE 814

Query: 708 G 708
            
Sbjct: 815 E 815


>gi|323136305|ref|ZP_08071387.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242]
 gi|322398379|gb|EFY00899.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242]
          Length = 912

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 255/857 (29%), Positives = 411/857 (47%), Gaps = 115/857 (13%)

Query: 1   MGVDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  D+    +      +++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ 
Sbjct: 1   MAEDDTKKDDPEKHGSDIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILF 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M+E G      + KSARIVG+V+GK HPHGD ++YD+LVR+AQPF  R  L+ GQGNFG
Sbjct: 61  SMNENGHTPDKPYVKSARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLMLVDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++D D  AA RYTE+R+ + A  +L+ +DE  VDF+  Y+ ++SEP V P++FPNLL NG
Sbjct: 121 SVDNDPPAAMRYTESRLAKPALALLEDIDEGTVDFQPNYDGKESEPTVLPARFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +AA+ALID P++++ +L+E + GPDFPT   I+  R  I
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDAAIALIDKPDMTVAELMEIVPGPDFPTAATIL-GRGGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y  GRG   +RA+  +E + +    I+ TEIPYQV K+ LIE+IAEL+  KR+  + 
Sbjct: 240 RNAYATGRGSIIMRAKAEIETLRKEREAIIFTEIPYQVNKAALIERIAELVKEKRVEGIA 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  D   ++    R    D+++  ++  + +++ F +NM  L+ G  P++M L  
Sbjct: 300 DLRDESDRDGMRIVVELKREAVADVVLNQLWRHTALQSSFAVNMIALN-GGRPELMTLHD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           +L+ ++  R  V+ RR+ FR+        +  GL IA  NIDE+I +IRN          
Sbjct: 359 VLRAFVDFRETVVTRRTKFRLAKARDNAHLQVGLAIAVANIDEVIRLIRNSPDAAAAREA 418

Query: 417 --------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                           L+E Q  AIL+LRL+ L  L   +I   
Sbjct: 419 LMARDWPAKDMAPLVELIADPRHKLSHDGTIRLSEAQARAILDLRLQRLTALGREEIAEA 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           L+ L AE  +   +L S ++ +  I  E+  VKE ++       RRT   +   A+    
Sbjct: 479 LNKLAAEIAEYLEILRSREKLFGIIKDEMLAVKEAYATP-----RRTQITD---AEGDVE 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I +E + V +S+ G+I+          +      S +  KE D +     A+T   
Sbjct: 531 DEDLIAREDMVVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQMKEEDFVHRLFVANTHTP 590

Query: 563 ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KL 614
           +L  S+ GKAY      L   + +  G+A+  ++ L   + I T               +
Sbjct: 591 VLFFSSRGKAYKEKVWRLPLAAPQARGKALVNMLPLESGERITTIMPLPEDESSWATLDV 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV-KVTGDHVAVVGENRKLLIF 673
           +  ++ G     + S+ +   R G   +K+   E +  V      D + +   + + + F
Sbjct: 651 IFATTGGTVRRNKLSDFVDVRRNGLIAMKLDDGEAIVDVATATEHDDILLTTSDGQCIRF 710

Query: 674 SIDQIPE-MSRG----KGV------RLQSY-------------------------KDGGI 697
           ++ ++     R     +GV      R+ S                          + G  
Sbjct: 711 AVPEVRVFQGRTSMGVRGVSLGQGDRVISLSILNHFEATGEERTAYLKRANALRRRMGED 770

Query: 698 SD---------------------VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
                                      ++ E +  +  +   Y +  +        RGG 
Sbjct: 771 VSPDAGAEAEEAATGAVELTDERFAAMQVAEQI-ILTVSENGYGKRTSSYEYRTTGRGGK 829

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +      R+GK ++S
Sbjct: 830 GIVAMAVNARNGKLVAS 846



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKT----FLKVSSEEKMKLVVKVTGDHVAVVG 665
           +   +L VS  G        E     R GK      +   + + +       GD + +V 
Sbjct: 800 AEQIILTVSENGYGKRTSSYEYRTTGRGGKGIVAMAVNARNGKLVASFPVGQGDEIMLVT 859

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
              +L+   +D I    R  +GV + +  +      +
Sbjct: 860 NGGQLIRCPVDGIRIAGRSTQGVIVFNTAEDERVVSV 896



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 2/106 (1%)

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++    ++V    +  V EN      S  +     R GKG+   +        V  F + 
Sbjct: 791 DERFAAMQVAEQIILTVSENGYGKRTSSYEYRTTGRGGKGIVAMAVNARNGKLVASFPVG 850

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +                 +  R   G +V        + +S
Sbjct: 851 QGDEIMLVTNGGQLIRCPVDGIRIAGRSTQGVIVFNTAE-DERVVS 895


>gi|209527299|ref|ZP_03275809.1| DNA gyrase, A subunit [Arthrospira maxima CS-328]
 gi|209492287|gb|EDZ92632.1| DNA gyrase, A subunit [Arthrospira maxima CS-328]
          Length = 882

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 244/792 (30%), Positives = 377/792 (47%), Gaps = 61/792 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +    LR  +++ YL YA+S I  RA+PD RDGFKPVHRRI++AM+E+GL     F
Sbjct: 4   SESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYT 123

Query: 133 EARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E R+  +  E +L+ +D D VDF D ++    EP+V P++ P LL NG+SGIAVGMAT+I
Sbjct: 124 ECRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +ALI NPEI+  +L+ YI GPDFPTG  I+  R  I E+Y  GRG   
Sbjct: 184 PPHNLNELVDGLVALIHNPEITDTELMRYIPGPDFPTGAKIL-GRSGIREAYTTGRGSIT 242

Query: 252 VRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          I++TE+PYQ  K+ LIEKIAE++  KR+  + DIRDES  
Sbjct: 243 MRGVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDR 302

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    R   P +++ +++  + ++T F  NM  L     P+++ L   L  +L  
Sbjct: 303 EGMRIVVELRRDAYPRVVLNNLYKQTPLQTNFGANMLALV-NGKPELLTLKRYLHVFLDF 361

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLT 424
           R + + RR+ +  +  + R  +L+GLLIA  N+D IIA+IR+             RF L+
Sbjct: 362 RIDTIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIERFGLS 421

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I+ E   LLA+   ++ +LN  ++    +  E +E+K+
Sbjct: 422 EPQADAILQMQLRRLTALEAQKIEQEHQELLAKIADLNDILNRRERILEIVEQEAQEIKQ 481

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
                                  A  +  ++  E   +         +    +   S   
Sbjct: 482 RHGTPRRTEIELEESELEDTDLIANEKAIILLTEQGYIKRMPVNTFEAQNRATRGKSGTK 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KE D +K  L     D I+  +  G AY L A  +   S    G  I  ++ +  ++ I
Sbjct: 542 MKEDDGVKHFLSCCDHDSIMFFTERGVAYCLKAYQIPIGSRIARGVPIVQMLPIPRDEKI 601

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-G 658
            +      + +   L++++  G       S        G   + ++  ++++ V      
Sbjct: 602 TSLVAVGEFSNDEYLVMLTKGGYIKKTALSAFNNIRSNGIIAISLNEGDELRWVRSAKVD 661

Query: 659 DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGG------------------- 696
           D V +       + F  D   +  + R  +GV+    K                      
Sbjct: 662 DSVIIGSRLGMAIHFHTDDKQLRPLGRATRGVKAMKLKPDDELIGMDILPSFIVASIPKL 721

Query: 697 -----------------------ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
                                            +G++ +    R Y +        L  R
Sbjct: 722 GGEETEIEEEENTTVEEVDDTESEEIATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNR 781

Query: 734 GGVGSLVPKGFP 745
            G G +  K  P
Sbjct: 782 AGKGIIATKFKP 793



 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 7/119 (5%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKL 652
            +++I T  V      +LV++++G    V  S+     R GK  +        S + +  
Sbjct: 743 ESEEIATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKGIIATKFKPHLSGDCVVA 802

Query: 653 VVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           +  V   D + ++     ++   I  I   SR   GVR+Q          +      G 
Sbjct: 803 LQVVHNTDELMLITSRGIIIRQVISAISRQSRNATGVRVQRLDKEDAIAAVALVPLSGE 861


>gi|88602336|ref|YP_502514.1| DNA gyrase, A subunit [Methanospirillum hungatei JF-1]
 gi|88187798|gb|ABD40795.1| DNA gyrase subunit A [Methanospirillum hungatei JF-1]
          Length = 839

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 245/756 (32%), Positives = 414/756 (54%), Gaps = 31/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V++   ++  Y+ YA+S I  RAIPD+RDG KPVHRR + AM EMG      +KKS
Sbjct: 14  KVNPVNIEEEMKSSYIDYAMSVIIGRAIPDVRDGLKPVHRRSLFAMWEMGNTHDKPYKKS 73

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD S+YD++V++AQPF  R  L+ GQGNFG++DGD+ AA RYTE R
Sbjct: 74  ARVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRMMLVDGQGNFGSVDGDAPAAMRYTEVR 133

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + AE +L  ++++ V+F   ++E   EP V P+K PNLL NG+ GIAVG+AT +P HN
Sbjct: 134 LKREAEELLTDLEKETVEFVPNFDESLQEPSVLPAKLPNLLINGSDGIAVGIATKMPPHN 193

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C+A    +++P+ ++ +L++ + GPDFPTGG I+   + I  +Y  G+G   VR  
Sbjct: 194 LGEVCDAVCHYLEHPDTTVYELMQIMPGPDFPTGG-IIMGTDGIQNAYLSGQGKLTVRGV 252

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             ++E G     I++TEIPYQV K++LIE IAEL+  KRI  + D+RDES +D   ++  
Sbjct: 253 AEIDESG-KRNQIIITEIPYQVNKAKLIEHIAELVKEKRIEGISDLRDESDKDGMRIVID 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +   P L++  ++  + +E+ F +    +   R P+++ L  ++++++ HR  V+ RR
Sbjct: 312 LRKDARPQLILNHLYKHTALESTFGIINYAIVD-RQPKILGLIPLIEQFVRHRITVITRR 370

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  + RV IL+GLL A  NID +I  I   +  D+ K  ++++FSL E Q  AIL
Sbjct: 371 SEFDKRKAEERVHILRGLLHAIDNIDAVITTIRAAQTADEAKEALIAKFSLDEAQAGAIL 430

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++LR L  LE+ ++  E + L AE  K+  LL+S      +I+ E++E++E ++     
Sbjct: 431 QMQLRRLAALEKQKLIDEREQLEAEIRKLIELLSSEDNIRAEISRELQELREKYAD---- 486

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALH 544
            +RRT     +   +  +++ +I  + + V ++++ +++ +   +          +  + 
Sbjct: 487 -KRRTQI---TGDLQEIVREDLIPNKQVLVCLTHQNYVKHMDVDAYRVQGRGGRGVMGIS 542

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDI 602
            K+GD ++    A+T D +L  ++ G+AY L   ++     +  G+AI  L+DL   + +
Sbjct: 543 IKDGDYVEQVFVANTHDHLLCFTSTGRAYWLRVFDIPEGSRQSKGKAIVNLLDLRSEERV 602

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
                   + S    L ++ +G    + + E       G   + +   + +  V+   G 
Sbjct: 603 TAVIPVQEFSSDRFFLFLTERGMIIKIPQDEFSRPRSTGVNAISLREGDNLVHVMVSDGS 662

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +  +  + L F  +QIP   R   GV     KD  I   +   I EG   +     
Sbjct: 663 QEIIITTKYGQSLRFHEEQIPLRHRNALGVIGMRMKDDDIVTSMTV-IEEGKHLLTITSS 721

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  N        RG +G    K   R+   +++
Sbjct: 722 GYGKRTNFDEYRGHGRGTMGVRNIK-LKRNDGIVTA 756



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S  ++A+  +EGD+L   + +  +  I++ +  G++  L          H  A+ ++
Sbjct: 636 RPRSTGVNAISLREGDNLVHVMVSDGSQEIIITTKYGQS--LRFHEEQIPLRHRNALGVI 693

Query: 594 IDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                + DIVT+    +    LL ++S G        E   + R   G   +K+   + +
Sbjct: 694 GMRMKDDDIVTSMTVIEEGKHLLTITSSGYGKRTNFDEYRGHGRGTMGVRNIKLKRNDGI 753

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
                    + + ++     ++  S+++I    R  +GVR+     G  +  V      E
Sbjct: 754 VTAFSAGPEEEIILMSAEGIVIRTSVEKITIQGRSTQGVRIMRLAAGDRVVGVTSLSPEE 813

Query: 708 GLTW 711
               
Sbjct: 814 QKDI 817


>gi|319440164|ref|ZP_07989320.1| DNA gyrase subunit A [Corynebacterium variabile DSM 44702]
          Length = 836

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 232/778 (29%), Positives = 386/778 (49%), Gaps = 38/778 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D      TL  + +  + L   +   Y+ YA+S I  RA+P++RDG KPVHRR+I+A
Sbjct: 1   MSDDTNGGGETLF-DRITPIDLTEEMRNSYIDYAMSVIVGRALPEVRDGMKPVHRRVIYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G      + KSAR V E +G  HPHGD ++YD+L R+AQP+  RYPL+ GQGNFG+
Sbjct: 60  MYDNGFRHDRGYVKSARPVAETMGHYHPHGDTAIYDTLCRMAQPWSMRYPLVDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTE R+T +A  +++ + E+ V+F   Y+ +  EP V PS+ PNLL NG+
Sbjct: 120 RGNDGPAAMRYTECRLTPLALEMVRDIRENTVNFSPNYDGKSQEPDVLPSRVPNLLMNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESR 236
           SGIAVGMAT+IP HN+ E+ EA   L++NPE      +E  ++ + GPDFPT G ++   
Sbjct: 180 SGIAVGMATNIPPHNLNELAEAIFWLLENPESDEQTALEACMQRVKGPDFPTAG-LIVGD 238

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I ++Y  GRG  R+R +  +EE G     I++TE+PY V    L+  IAE +   +I 
Sbjct: 239 QGIKDAYTTGRGSIRMRGKSTIEEEGS-RQIIIITELPYMVNPDNLVSSIAEQVRDGKIA 297

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            +  I DE S      ++    R   P +++ +++  S ++T F  NM  +    VP+ +
Sbjct: 298 GIAKIDDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDS-VPRTL 356

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-- 413
            LD +L+ ++ H+ EV+ RR+ FR+   ++R  IL+GL+ A   +DE+IA+IR       
Sbjct: 357 RLDQMLRLYVKHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDALDEVIALIRRSATVDI 416

Query: 414 -KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  +     + + Q DAIL ++LR L  LE  +I  EL  +      + ++L S ++Q 
Sbjct: 417 AREGLKDLLDIDDIQADAILAMQLRRLAALERQKIIDELAEIEETIADLKAILASPERQR 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +  E+ E+ E F        RRT       A     ++ +I +E + V I++ G+ + 
Sbjct: 477 AIVRDELTEIVEKFGDE-----RRTEIV---GATGDVSEEDLIARENVVVTITSTGYAKR 528

Query: 533 LKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
            K  +          +     K+ D ++      T D I+ L+  G+ Y L A  L    
Sbjct: 529 TKVDNYRSQRRGGKGVRGAELKQDDIVRHFFVCSTHDIIMFLTNYGRVYRLKAYELPEAS 588

Query: 585 GHGEAIQLLIDLNHN-----QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                  +   L         +I+    ++    L++ + +G       ++       G 
Sbjct: 589 RTARGQHVANLLEFQPGEQIAEIIQIQSFEDAPYLVLATQQGRVKKSRLTDYDTARSGGL 648

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
             + ++  +K+      TG D + +V E  + L F+ D   +  M R   GV+   ++  
Sbjct: 649 IAINLNEGDKLIGAQLCTGDDDLLLVSEEGQALRFTADDDTLRPMGRATAGVKGMRFRGE 708

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +     +    + ++G  Y +        +  RG +G +  K  P+ GK + +
Sbjct: 709 DQLLALTVVHDDSCLLVATSG-GYGKRTPMEEYPVKGRGTMGVVTFKYDPKRGKLIGA 765



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 104/350 (29%), Gaps = 20/350 (5%)

Query: 379 RMQAIDRRVEILKGLLIAYLNID-EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             Q    R E+ + +         EI+    +  +   +      +T          ++ 
Sbjct: 473 ERQRAIVRDELTEIVEKFGDERRTEIVGATGDVSEEDLIARENVVVTITSTGYAKRTKVD 532

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE-----IREVKEIFSKSTDL 492
           + R             L  +       + S       +        ++  +   +  T  
Sbjct: 533 NYRSQRRGGKGVRGAELKQDDIVRHFFVCSTHDIIMFLTNYGRVYRLKAYELPEASRTAR 592

Query: 493 GRRRTTFCEVSRADK--ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALH 544
           G+      E    ++    +Q    E  P  V+ + +G ++  +           L A++
Sbjct: 593 GQHVANLLEFQPGEQIAEIIQIQSFEDAPYLVLATQQGRVKKSRLTDYDTARSGGLIAIN 652

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIV 603
             EGD L  A      D +LL+S +G+A    A +      G   A    +       ++
Sbjct: 653 LNEGDKLIGAQLCTGDDDLLLVSEEGQALRFTADDDTLRPMGRATAGVKGMRFRGEDQLL 712

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGD 659
              V      LLV +S G        E     R     +    + K    +  V     D
Sbjct: 713 ALTVVHDDSCLLVATSGGYGKRTPMEEYPVKGRGTMGVVTFKYDPKRGKLIGAVTVTEDD 772

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            +  V     ++   + QI + SR   GVRL     G     I   + + 
Sbjct: 773 EIFAVTSAGGIIRTEVGQIRKTSRATMGVRLVDLAKGVELLAIDRNVEDE 822


>gi|319405587|emb|CBI79207.1| DNA gyrase subunit A [Bartonella sp. AR 15-3]
          Length = 922

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 265/855 (30%), Positives = 421/855 (49%), Gaps = 117/855 (13%)

Query: 6   ISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++  T  E      ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM
Sbjct: 1   MTDLTTQSEYDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F  +++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +VAE +L  +D++ VDF+D Y+  + EP+V P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPMVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I++++++E I GPDFPTGGII+  R  I  
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIIL-GRSGIRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE+      I+V+EIPYQ+ K+ +IEKIAEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + +++ R EV+ RR+ + ++    R  +L GL IA  NIDEIIA+IR    P+       
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARIQLM 418

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +      +L S  +    +  E+  +++ F        RRT F      +     +
Sbjct: 479 KIGVDITDYLDVLASRLRIMGIVKDELSTLRKEFVTP-----RRTIFG---FGNAEMDNE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+I+          +      S +  K+ D +     ++T   +L
Sbjct: 531 DLIVPEDMVVTVSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTSVL 590

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G A+  ++ L   + + T               ++ 
Sbjct: 591 FFSSRGIVYKEKVWRLPIGTPQSRGRALVNMLPLQEKERVTTIMPLPEDEASWSKLDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            +++G     + S+ I   R GK  +K+  E+++  V   T  D V +   N + + F +
Sbjct: 651 ATTRGTVRRNKLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPV 710

Query: 676 DQIPE-MSRGK-GVRLQSYKDGG-ISDVICFKICEGLTW--------------------- 711
             +   M R   GVR  +  DG  +  +   +  E  +                      
Sbjct: 711 IDVRVFMGRNSVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRVAGADAE 770

Query: 712 -------------------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                                          +  +   Y +  +     +  RGG G   
Sbjct: 771 DVVIVDEDEEEIETELTDERYAELASREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRA 830

Query: 741 PKGFPRS--GKFLSS 753
                 +  GK +++
Sbjct: 831 TDPTKATEIGKLVAA 845



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 8/107 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              LL VS  G        E   + R GK        K +   K+     V   D + +V
Sbjct: 798 EQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKATEIGKLVAAFPVKAQDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
            +  +L+   I+ I    R  KGV + +   G  +  V      E  
Sbjct: 858 SDGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISDPEDD 904


>gi|47459329|ref|YP_016191.1| DNA gyrase subunit A [Mycoplasma mobile 163K]
 gi|47458659|gb|AAT27980.1| DNA gyrase subunit A [Mycoplasma mobile 163K]
          Length = 920

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 248/754 (32%), Positives = 402/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  +++   +   +L YA+S I  RA+PD RDG KPVHRRI++ M+E+GL + A +KK
Sbjct: 74  DNLAPINVSKEMRTSFLEYAMSVIVSRALPDARDGLKPVHRRILYGMTELGLFYNAQYKK 133

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGD SVY+++VR+AQ F  RYPLI G GNFG+IDGDSAAA RYTEA
Sbjct: 134 SARVVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDSAAAMRYTEA 193

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +++G+ +D VDF   Y+  + EP V PS+ PNLL +G +GIAVGMAT+IP H
Sbjct: 194 RMSRIASSMVEGLKKDTVDFIPNYDGSEEEPSVLPSRIPNLLISGATGIAVGMATTIPPH 253

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A +AL  N EI+IE+L+++I GPDFPTG  I+     I+ +Y  GRG   +R+
Sbjct: 254 NLTETIDAVVALARNSEITIEELMQHIKGPDFPTGAEIL-GTSGIITAYETGRGAIVLRS 312

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   I++TEIPY+V+K  +IEKIA L   KRI  + +IRDE++     V+ 
Sbjct: 313 KSHIETLKSGKSRIIITEIPYEVKKPAVIEKIALLSKEKRIEGISEIRDETSRKGIRVVI 372

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +++ P++++  +  L++++  +  NM  L     P+++ L   L  +L H+ +V+ R
Sbjct: 373 DLKKNVIPEVILNKVLKLTNLQVNYNFNMIALVK-GEPKLLNLKQALDVYLKHQIDVVTR 431

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           R+ F ++    R  IL+GL+IA  NIDE+I +IR+           ++ F L+E Q  AI
Sbjct: 432 RTKFDLERAQDRAHILEGLIIAVSNIDEVIRLIRSSTNDNDAQSKLMASFKLSEIQAKAI 491

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL  L  L   + + EL+ L  E    +++LNS ++  + I  E+ E+K  F     
Sbjct: 492 IDMRLGRLTSLAIEKTQDELNALKQEIAGYENILNSHEKLIDLIVSELEEIKARFGDE-- 549

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT     +        + +I  + I + +S  G+++          K   V +   
Sbjct: 550 ---RRTII--NTSDYGIIKDEDLIPNKNIAITLSKNGYVKRTPLTDFRSQKRGGVGVYTH 604

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
                D +   L  HT   IL+ ++  K Y + A  +       +       I+++  + 
Sbjct: 605 KTYADDDVDSILTTHTHTDILVFTSSAKVYKIRAHQIPELSRQAKGVPFINFINIDKKEK 664

Query: 602 IVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +V+    +       LL ++  G A              GK  L +  ++++  V+ +  
Sbjct: 665 VVSLLSVEEYFEGTYLLTITKNGIAKKTSIEAYKRIQSNGKFALSLKEDDELFKVITIDD 724

Query: 659 DHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           +   ++G  N K++ F   +I  M R   GV      D     V   K  EG   +    
Sbjct: 725 EDSVIIGANNGKVVHFDSKEIRPMGRTASGVIAMKL-DKKERVVGVGKSSEGKYVLSIGD 783

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           + + +        L  R   G +      ++GK 
Sbjct: 784 KGFGKKTELESYRLSHRNVKGVISLNV-KKAGKL 816



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 71/224 (31%), Gaps = 20/224 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          +  S    AL  KE D L   +     D +++ + +GK     +  +  
Sbjct: 688 IAKKTSIEAYKRIQSNGKFALSLKEDDELFKVITIDDEDSVIIGANNGKVVHFDSKEIRP 747

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKT 640
                 +  + + L+  + +V          +L +  KG     E      + R   G  
Sbjct: 748 MGRTA-SGVIAMKLDKKERVVGVGKSSEGKYVLSIGDKGFGKKTELESYRLSHRNVKGVI 806

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGIS 698
            L V    K+  V  V G +    +      +   ++Q+ E SRG KGV+L + KD    
Sbjct: 807 SLNVKKAGKLNYVGIVKGYEEAIFLTNEGIAIRTELNQVSETSRGTKGVKLITLKDKDYI 866

Query: 699 DVICFKICEGLT---------------WIDSAGRSYNRSENDLL 727
             I     E +                 +D    +Y   E    
Sbjct: 867 ASIAIINTEKIDEEIEKSLELEVSSGPVLDLENNNYGIQEEIED 910


>gi|325475508|gb|EGC78689.1| A subunit [Treponema denticola F0402]
          Length = 815

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 230/759 (30%), Positives = 378/759 (49%), Gaps = 15/759 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     V  + +   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MEEIQTKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L      +K A+IVG+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD 
Sbjct: 61  LRSSGPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AAYRYTEA+M ++AE +++ + ++ VDF   +++   EP V P+KFP LLANG+SGIAV
Sbjct: 121 PAAYRYTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN++EI +A  A IDNPEI I++L +Y+ GPDFPTGG ++  R+ I ++++ 
Sbjct: 181 GMATNMPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGG-VIYGRKGIKQAFKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG   VR ++ +E   +G   IV TE+PYQV  + L+ +I EL   K I  + ++ DE 
Sbjct: 240 GRGKILVRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDET 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V+    R     +++  +F  + +++ F +    L     P+ + L  ++K +
Sbjct: 300 SDRTGLRVVIELKRGAITKVVLNQLFAKTALQSSFGVINLALV-NGRPETLNLKLLVKYF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRF 421
           + HR +V+ RR+ F ++  + R  IL+ L++A  NIDE+I IIR     +     ++ RF
Sbjct: 359 VEHRVDVVTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRASRDTQTAKNNLMERF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              + Q  AI++++L+ L  LE   ++ EL  L      +  LL   ++    I  E  E
Sbjct: 419 GFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNE 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-ITVVISNRGWIRSLKSHSVDL 540
           + E F              E++  D    ++ +I       +        +S        
Sbjct: 479 IAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGS 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
           ++++  E D L     A T D I+ ++  GKAY L    +           I+ L+ ++ 
Sbjct: 539 NSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIKSLLSVSS 598

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           +++I        +D    LL+ ++ G    V          +G   +K+   +K+   + 
Sbjct: 599 DEEITAVVSLKEFDDKTYLLMATAGGVVKKVTTDNFANAKTRGIIAIKLDEGDKLVSAIL 658

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G D + ++    + L  S + I    R  +GV                ++ E    + 
Sbjct: 659 TGGKDEIMLITRRGQALRTSEEDIRSQGRSSRGVTGIKLSSEDELT-GALRVTENQKMLV 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +           RG  G  +     ++G+ + 
Sbjct: 718 MTENGYGKRVEFSEFSAHGRGTGGQRIYTLSEKTGEVVG 756



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 7/181 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
            + +  + A+   EGD L  A+     D I+L++  G+A      ++ S       +   
Sbjct: 636 NAKTRGIIAIKLDEGDKLVSAILTGGKDEIMLITRRGQALRTSEEDIRSQGRSSRGV-TG 694

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEK 649
           I L+   ++  A       K+LV++  G    VE SE  A+ R   G+    +S    E 
Sbjct: 695 IKLSSEDELTGALRVTENQKMLVMTENGYGKRVEFSEFSAHGRGTGGQRIYTLSEKTGEV 754

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICE 707
           + L+     D V  +    K +  S+D +  M R  +GVR+   +    +  +      E
Sbjct: 755 VGLLTVFDDDEVVCITGQGKTIRISVDSVGTMGRSAQGVRILDIESPDMLIGLDVVARDE 814

Query: 708 G 708
            
Sbjct: 815 E 815


>gi|154174125|ref|YP_001408750.1| DNA gyrase subunit A [Campylobacter curvus 525.92]
 gi|112802642|gb|EAT99986.1| DNA gyrase, A subunit [Campylobacter curvus 525.92]
          Length = 873

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 252/803 (31%), Positives = 402/803 (50%), Gaps = 59/803 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  +   + +++K V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G
Sbjct: 1   MEENILNLNQDIKVVDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +   + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDGDS
Sbjct: 61  VGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPTVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT +AE +L+ +D+D VDF   Y++   EP V PS+ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSTLEPDVLPSRVPNLLLNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P H++ E+ +  L L+DN   S+E++++YI GPDFPTGG I+  ++ I+E+YR 
Sbjct: 181 GMATNVPPHSLDELIDGLLLLLDNKNASLEEIMQYIKGPDFPTGG-IIFGKKGIMEAYRT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  + E       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKTHI-EKKPNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++ ++F  + ME+ F + + +    + P++  L  +LK +L
Sbjct: 299 DREGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGV-IMLAIDNKEPKIFTLIELLKLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            HR+ V+ R++ F ++    R  IL+GL IA  NIDE+I +IR           ++ +F 
Sbjct: 358 NHRKTVIIRKTIFDLEKARARAHILEGLKIALDNIDEVIELIRKSADTPSARDGLMEKFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL++RL  L  LE  ++ +EL  LLAE  ++D +L S     N I  E+ E+
Sbjct: 418 LSELQSNAILDMRLSKLTGLEREKLDNELKELLAEISRLDEILKSETLLENLIKDELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K  F                           +       +           K       A
Sbjct: 478 KSKFKVPRLTEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKVA 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
           +   + D ++    ++T D ++ ++  G+ Y L    +        G+A+  L+ L   +
Sbjct: 538 VTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLVQLQPEE 597

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +     L   +  G       SE       G   + +   +++   + V 
Sbjct: 598 KIKAIIPTTDFAQNKSLAFFTKNGIVKRTNLSEFKNIRSIGVRAISLDENDELVTALIVE 657

Query: 658 -GDH---------------------------------------------VAVVGENRKLL 671
            GD                                              + +V +    L
Sbjct: 658 HGDEGVQPENLIDELGVETEINEIETIESEIDEQSDENIDSIDDTDEKMLFIVTKKGMCL 717

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
            F + ++ +M R  +GV    +K+ G                +  + +   +        
Sbjct: 718 KFKLGKVRQMGRTARGVTGIKFKEKGDEVVGAAVIESNAQEILSISQKGIGKRTTAEEYR 777

Query: 730 LGKRGGVGSLVPKGFPRSGKFLS 752
           L  RGG G +  K   R+G+ + 
Sbjct: 778 LTNRGGKGVICMKLTTRTGELIG 800



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 50/154 (32%), Gaps = 12/154 (7%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
            +   ++ ++ +G    V   +     R  KGK  +    ++ ++      T D +  V 
Sbjct: 503 PNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVT 562

Query: 666 ENRKLLIFSIDQIPEMSR-GKG---VRLQSYKDGGISDVICFKIC--EGLTWIDSAGRSY 719
           +  +L    + +IPE SR  KG   V L   +       I       +  +         
Sbjct: 563 DRGQLYWLKVYKIPEGSRTAKGKAVVNLVQLQPEEKIKAIIPTTDFAQNKSLAFFTKNGI 622

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  N       +   +G         + + +++
Sbjct: 623 VKRTNLSEFKNIR--SIGVRAISLDE-NDELVTA 653


>gi|319404135|emb|CBI77726.1| DNA gyrase subunit A [Bartonella rochalimae ATCC BAA-1498]
          Length = 922

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 267/855 (31%), Positives = 423/855 (49%), Gaps = 117/855 (13%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++  T  E +    ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F  +++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +VAE +L  +D++ VDF+D Y+  + EP+V P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I++++++E I GPDFPTGGII+  R  +  
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPNITLDEIIEIIPGPDFPTGGIIL-GRSGVRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE+      I+V+EIPYQ+ K+ +IEKIAEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + +++ R EV+ RR+ + ++    R  +L GL IA  NIDEIIA+IR    P+       
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLM 418

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +      +L+S  +    +  E+  ++E F        RRT F      +     +
Sbjct: 479 KIGVDITDYLHILSSRLRIMGIVKNELSTLREEFVTP-----RRTVFG---FGNAEMDNE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+I+          +      S +  K+ D +     ++T   +L
Sbjct: 531 DLIVPEDMVVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G A+  ++ L   + I T               ++ 
Sbjct: 591 FFSSRGIVYKEKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSELDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            +++G     + S+ I   R GK  +K+  E+++  V   T  D V +   N + + F +
Sbjct: 651 ATTRGTVRRNKLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPV 710

Query: 676 DQIPE-MSRGK-GVRLQSYKDGG-ISDVICFKICEGLTW--------------------- 711
             +   + R   GVR  +  DG  +  +   +  E  +                      
Sbjct: 711 IDVRVFVGRNSVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRSAGADTE 770

Query: 712 -------------------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                                          +  +   Y +  +     +  RGG G   
Sbjct: 771 DVVIVDEDEDGDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRA 830

Query: 741 --PKGFPRSGKFLSS 753
             P      GK +++
Sbjct: 831 TDPNKTVEIGKLVAA 845



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 8/107 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE-----KMKLVVKVTG-DHVAVV 664
              LL VS  G        E   + R GK        +     K+     V   D + +V
Sbjct: 798 EQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPNKTVEIGKLVAAFPVEAQDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
               +L+   I+ I    R  KGV + +   G  +  V      E  
Sbjct: 858 SNGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISDPEDD 904


>gi|16331582|ref|NP_442310.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803]
 gi|8469101|sp|Q55738|GYRA_SYNY3 RecName: Full=DNA gyrase subunit A
 gi|1001649|dbj|BAA10380.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
          Length = 860

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 238/803 (29%), Positives = 395/803 (49%), Gaps = 70/803 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S     + + A  LR  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MTDSP----DRLIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D 
Sbjct: 57  LTPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDP 116

Query: 126 AAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE+R+  +    +L+ ++ + VDF D ++    EP V P++ P LL NG+SGIA
Sbjct: 117 PAAMRYTESRLRPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIA 176

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ + A+ALI NPEI+ ++L++ I GPDFPTG  I+  R  I E+Y 
Sbjct: 177 VGMATNIPPHNLGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQIL-GRSGIREAYL 235

Query: 245 LGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            GRG   +R    +E +          I+VTE+PYQ  K+ LIE+IA+L+  K+I  + D
Sbjct: 236 TGRGSITMRGVASIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIAD 295

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  D   ++    R     +++ +++  + +++ F  N+  L     P+V+ +   
Sbjct: 296 IRDESDRDGMRIVIELKRDAYARVVLNNLYKQTPIQSNFGANLLALV-NGTPEVLTIKKF 354

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L  +   R E + RR+ + ++  + R  +L+GLLIA  N+D +I +IR        K  +
Sbjct: 355 LTVFWEFRIETITRRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTEL 414

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           V  FSL+E Q DAIL ++LR L  LE  +I +E D L  +      +L   ++    I  
Sbjct: 415 VEGFSLSEVQADAILQMQLRRLTALEADKITAEHDELQTKIADFQDILARRERVNAIIEE 474

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ ++K I +       RRT   +    D   +   +I  +   ++++ +G+I+ + + +
Sbjct: 475 ELEQIKAIHATP-----RRTVIVQ---EDGELIDTDLIANDQALILLTEQGYIKRMPAST 526

Query: 538 VDLSAL--------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                           K+ D ++  L     D++L  S  G  Y+L A  +   S    G
Sbjct: 527 FGTQNRATRGKAAAKIKDDDGVEHFLSCCDHDKVLFFSDRGVVYSLNAYQIPIASRTARG 586

Query: 588 EAIQLLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  ++ +  ++ I   V+   +D     ++++ +G       S        G   + +
Sbjct: 587 VPIVQMLPIPKDEKITSLVSVSEFDDDTYFIMLTKQGYIKKTALSAFSNIRANGLIAISL 646

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-KGVRLQSYKDGG---- 696
              ++++ V      D V +  +    + F    D++  + R  +GV+    + G     
Sbjct: 647 VEGDQLRWVRLAKAEDSVIIGSQKGMAIHFKADQDELRALGRATRGVKSMRLRSGDALIS 706

Query: 697 -------ISDVICF--------------------KICEGLTWIDSAGRSYNRSENDLLGW 729
                  +   I                          G   +    + + +        
Sbjct: 707 MDILPSQVVANIAVGSEDEPDEDLGGDTDAILEESDNPGPWLLGVTMKGFGKRVPIGQFR 766

Query: 730 LGKRGGVGSLVPKGFPRSGKFLS 752
           L  R G+G    +   +  + ++
Sbjct: 767 LQHRAGLGVKAIRFKSKDDQLVA 789



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVV 664
           +    LL V+ KG    V   +     R G     +     ++++  +  V   D + +V
Sbjct: 743 NPGPWLLGVTMKGFGKRVPIGQFRLQHRAGLGVKAIRFKSKDDQLVALHVVNADDELMIV 802

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
                ++  S++ I   SR   GVR+Q          +      G  
Sbjct: 803 TNRGIIIRQSVNDISPQSRSATGVRVQRLDADDAIAAVALVPPSGEE 849


>gi|295094328|emb|CBK83419.1| DNA gyrase subunit A [Coprococcus sp. ART55/1]
          Length = 852

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 224/749 (29%), Positives = 383/749 (51%), Gaps = 17/749 (2%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+H+M E+        +K ARI
Sbjct: 12  EVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARI 71

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD S+Y++LV+LAQ +  RYPL+ G GNFG++DGD AAA RYTEAR+++
Sbjct: 72  VGDTMGKYHPHGDISIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSK 131

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++  ++  +++D VDF   ++  + EPVV PS++PNLL NGTSGIAVGMAT+IP HN++E
Sbjct: 132 ISMEMMADINKDTVDFTPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKE 191

Query: 199 ICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
              AA+ +IDN      E  I+++++ + GPDFPTG  I+  R+ I ++YR GRG  +VR
Sbjct: 192 TINAAIKIIDNRVEEGRETEIDEIMDIVKGPDFPTGAQIL-GRQGINDAYRTGRGKIKVR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A   +E +  G   IVVTE+PY V KS LI+ + +L+  KRI  + DIRDES+ +   V+
Sbjct: 251 AITEIETMNNGKHRIVVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVV 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + ++ ++++  +F  + ++  F   M  L    VP+++ +  +L  +L H+ +V+ 
Sbjct: 311 IELRKDVNANVILNQLFKHTQLQDTFGCIMLALVD-GVPKILNIKDMLTYYLKHQEDVVT 369

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ + +   + R  IL+G LIA  NIDE+I IIRN           + RF L+E Q  A
Sbjct: 370 RRTKYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIERFGLSEAQAGA 429

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RLR+L  LE  +I++E + L+A+  +   +L    +    I  E+  + + +    
Sbjct: 430 IVDMRLRALTGLEREKIENEYNELIAKIAEYKEILADENKLLGVIKTELAAIADKYGDER 489

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                  +            +  +   +   +    +   +        +  ++  + D 
Sbjct: 490 RTSITAYSDDITDEELIKREEIVISMTKLGYIKRMPKDTFKVQNRGGKGIKGMNTIDNDI 549

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           +      +T + I+  +  G+ Y +    +        G AI  L+ L   + +      
Sbjct: 550 IDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRNARGVAIVNLLQLLPGEKVTAIIPI 609

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665
                  L++ +  G     +        + G   + ++  +++  V   +G+  V +V 
Sbjct: 610 AGFDKKYLMMATKNGIVKKTKIEAFENIRKTGLAAITLNEGDELIEVKATSGENDVFLVT 669

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
                + F+ + + +  R   GVR      G     +   + +G   +    +   +   
Sbjct: 670 AKGMCIRFNEECVRDTGRTSMGVRGIRCDKGDEVIAMQLDV-QGDEMLFVTTKGMGKRTE 728

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   RGG G    +   ++G  +S+
Sbjct: 729 LSEFAPQMRGGKGVKCYRITEKTGDIVSA 757



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 5/116 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I  +   +++   +     ++L V++KG     E SE     R GK      +   + + 
Sbjct: 695 IRCDKGDEVIAMQLDVQGDEMLFVTTKGMGKRTELSEFAPQMRGGKGVKCYRITEKTGDI 754

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           +          + ++     ++      I  + R   GV+L +    G + V    
Sbjct: 755 VSAKAVTNDHDIMMMTNEGIMIRMHCSDITVIGRITSGVKLMNIGKDGNTFVASVA 810


>gi|271961617|ref|YP_003335813.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270504792|gb|ACZ83070.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 836

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 230/773 (29%), Positives = 386/773 (49%), Gaps = 36/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ NT + E ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G
Sbjct: 1   MTDVNTPLVERIEPVDIQSEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + K +R+VG+V+G  HPHGD S+Y ++VRLAQP+  RY LI GQGNFG+   D 
Sbjct: 61  YRPDRGYFKCSRVVGDVMGSYHPHGDSSIYGTVVRLAQPWALRYTLIDGQGNFGSPGNDM 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++  +A  +++ +D+D VDF+  Y+    EP+V PS+FPNLL NG++GIAV
Sbjct: 121 PAAMRYTECKLAPIAMEMIRDIDKDTVDFQPNYDGRSQEPLVLPSRFPNLLVNGSAGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ +     + NPE S E+    L+  + GPDFPTG  ++  R  I +
Sbjct: 181 GMATNIPPHNLREVADGVRWALQNPEASDEELLEALIARVKGPDFPTGA-LIVGRRGIDD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG   +RA   VEE  +G  C+VVTE+PYQV    L   IAE +   RI  + D+
Sbjct: 240 AYRTGRGSITMRAIVEVEEDAKGRQCLVVTELPYQVNPDNLALSIAESVKEGRITGIADV 299

Query: 302 RDESAEDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           RDES+  V + ++    R     +++ +++  + ++T F  NM  L    VP+ + LD  
Sbjct: 300 RDESSSRVGQRLVIVLKRDAVAKVVLNNLYKHTQLQTTFGANMLALVD-GVPRTLRLDQF 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           ++ ++AH+ EV+ RR+ + ++  + R  IL+ LL A   +DE+IA+IR            
Sbjct: 359 VRHYVAHQIEVVVRRTRYLLRKAEERAHILRALLKALERMDEVIALIRRSPSASAAQGGL 418

Query: 421 F---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + E Q  AIL+++LR L  LE  QI  E D L+A      ++L S ++Q   +  
Sbjct: 419 MALLEIDEIQAQAILDMQLRKLAALERQQITDEYDTLMAHITDYQAILASPERQRTIVFD 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+   +        R+T              + ++ +E + V I+  G+ +      
Sbjct: 479 ELSEIVSKYGDE-----RKTEIIAYEGDMS---IEDLLAEEDMVVTITRGGYAKRTNTDL 530

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
               K     +     ++ D +       T   +L  +  G+ Y + A  L        G
Sbjct: 531 YRAQKRGGKGVRGAQLRQDDIVDHFFVTTTHHWLLFFTNKGRVYRVKAYELPDSGRDARG 590

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L+ +  ++ ++             L++ +  G       SE  +    G   + +
Sbjct: 591 QHLANLLAMQPDEVVMEVLDLRDYEVAPYLVLATRSGLVKKTRLSEYDSPRSGGLIAINL 650

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
             ++++     V   D + +V    + + F+     +  M R   GV    +  G     
Sbjct: 651 REDDEVIAARLVSEEDDLLLVSRGAQSIRFTASDEALRPMGRATSGVIGMRFLGGDELLA 710

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +I +G   + +    Y +        +  RGG G L  K     GK + +
Sbjct: 711 MN-RIGDGDDVLIATEGGYAKRTPADQYPVQGRGGKGVLTAKIVSARGKLVGA 762



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 5/98 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKV-TGDHVAVVG 665
               +L+ +  G A      +     R GK  L    VS+  K+     V   D V  + 
Sbjct: 716 DGDDVLIATEGGYAKRTPADQYPVQGRGGKGVLTAKIVSARGKLVGAAMVRPEDEVFAIT 775

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               ++  S  +I +  R   GVRL +  +G     + 
Sbjct: 776 SAGGVIRTSAGEIKQSGRQTMGVRLMNLAEGDSVVALA 813


>gi|289552256|ref|ZP_06441466.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605]
 gi|297729443|ref|ZP_06958561.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN R506]
 gi|289436888|gb|EFD19381.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605]
          Length = 838

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 223/776 (28%), Positives = 387/776 (49%), Gaps = 39/776 (5%)

Query: 6   ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++++    ++    ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 1   MTDTTLPPDDSLDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMF 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 61  DSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 121 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ +A          + E ++  ++  + GPDFPT G ++   + 
Sbjct: 181 IAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAG-LIVGSQG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             ++Y+  RG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 240 TADAYKTSRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + L
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVD-GVPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---K 414
           D +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     +
Sbjct: 359 DQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 419 AGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E+ E+ +          RRT       AD     + +I +E + V I+  G+ +   
Sbjct: 479 VRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKRTK 530

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
                  K     +     K+ D +       T D IL  +T G+ Y   A +L      
Sbjct: 531 TDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRT 590

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y     L++ +  G     + ++  +N   G   
Sbjct: 591 ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVA 650

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGI 697
           + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   +     
Sbjct: 651 VNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +   + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 711 LLSLNV-VREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 6/158 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
               D +LL+S +G++    A +      G   +    +  N +  +++  V      LL
Sbjct: 665 CSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLL 724

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLL 671
           V +S G A      E     R GK  L V       ++   + V  D  +  V     ++
Sbjct: 725 VATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVI 784

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 785 RTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 44.8 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 5/142 (3%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F   D L           +L+ ++ G A              
Sbjct: 687 DEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRG 746

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
           G+ +  ++       +V A + D   +L  V+S G        ++    R  KG   + +
Sbjct: 747 GKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNL 806

Query: 645 SSEEKMKLVVK---VTGDHVAV 663
              + +  + +    +GD  AV
Sbjct: 807 GEGDTLLAIARNAEESGDDNAV 828


>gi|118475139|ref|YP_892598.1| DNA gyrase subunit A [Campylobacter fetus subsp. fetus 82-40]
 gi|1346230|sp|P47235|GYRA_CAMFE RecName: Full=DNA gyrase subunit A
 gi|818859|gb|AAA67068.1| DNA gyrase A subunit [Campylobacter fetus]
 gi|118414365|gb|ABK82785.1| DNA gyrase, A subunit [Campylobacter fetus subsp. fetus 82-40]
          Length = 862

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 240/791 (30%), Positives = 396/791 (50%), Gaps = 47/791 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  +     +++ A+ +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G
Sbjct: 1   MEENIFSSNQDIDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +   + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R P + GQGNFG++DGD 
Sbjct: 61  VGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H++ E+    L L+D+ E+ +E ++ +I GPDFPTGG I+  ++ I+E+Y+ 
Sbjct: 181 GMATNIPPHSLDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGG-IIFGKKGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RA+  + E       IVV E+PYQV K++L   IA+L+  K I  + ++RDES
Sbjct: 240 GRGRIKLRAKTHI-EKKPNKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R    ++++ ++F  + ME  F + M  ++  + P+V  L  +LK +L
Sbjct: 299 DRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAIN-NKEPKVFSLLELLKLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            HR+ V+ RR+ F +Q    R  IL+GL IA  NID +I +I+           ++++F 
Sbjct: 358 NHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAKFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL++RL  L  LE  ++++EL  +L   EK+D++L S     N I  E+ E+
Sbjct: 418 LSELQSNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K  F                           +       +           K       A
Sbjct: 478 KSKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVA 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
           +   + D ++      + D ++ ++  G+ Y L    +        G+A+  LI L  ++
Sbjct: 538 VTTYDDDFIESFFTCMSHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLISLQADE 597

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +D +  L   +  G       SE       G   + +   +++  VV   
Sbjct: 598 KIKAIIPTTDFDESKSLAFFTKNGIVKRTNLSEFKNIRSIGVKAINLDDNDELVTVVIAN 657

Query: 658 ----------------------------------GDHVAVVGENRKLLIFSIDQIPEMSR 683
                                             G  +  V +    + F+++++ ++ R
Sbjct: 658 SEPDESYDDSFEDGEGVSNLQTISEDNSENSLESGKMLFAVTKKGMCIKFALNKVRQIGR 717

Query: 684 -GKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
             +GV    +K+             +    +  + +   +        L  RGG G +  
Sbjct: 718 VSRGVTAIRFKENLDEVVGAVVIENDSQEILSVSQKGIGKRTTADEYRLQSRGGKGVICM 777

Query: 742 KGFPRSGKFLS 752
           K  P++   + 
Sbjct: 778 KLTPKTKDLVG 788


>gi|83858199|ref|ZP_00951721.1| DNA topoisomerase IV subunit A [Oceanicaulis alexandrii HTCC2633]
 gi|83853022|gb|EAP90874.1| DNA topoisomerase IV subunit A [Oceanicaulis alexandrii HTCC2633]
          Length = 746

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 390/740 (52%), Positives = 528/740 (71%), Gaps = 3/740 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +          +   S   AL  RYLAYALSTI +RA+PD RDG KPVHRR+++AM  + 
Sbjct: 1   MGEQFPGDGGRIFDESFNDALSSRYLAYALSTITQRALPDARDGLKPVHRRLLYAMRLLK 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    AFKK AR+VG+VIG+ HPHGDQ+VY++LVRLAQ F  RYPL+ GQGNFGN+DGD 
Sbjct: 61  LSPDTAFKKCARVVGDVIGRFHPHGDQAVYEALVRLAQDFASRYPLVEGQGNFGNVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T+ A LILQ  DE  VDFR+TY+ ED EP+V P+ FPNLLANG++GIAV
Sbjct: 121 AAAMRYTEARLTEAAILILQDYDEGTVDFRETYDGEDKEPLVLPAAFPNLLANGSAGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN  E+C+AA  LI  P  + E LL Y+ GPDFPTGG+ VE+RE+I+E+Y  
Sbjct: 181 GMATNIPPHNAAELCDAARHLIKTPGAATETLLNYVQGPDFPTGGVCVETRENILEAYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFR+RARW VEE+GRG W IVVTEIPY VQK++LIE+IA L+  K++PLL D+ DES
Sbjct: 241 GRGGFRLRARWEVEELGRGQWQIVVTEIPYLVQKAKLIERIAALLDQKKLPLLADVMDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVR++L PK+R++DP LLMES+F L+D+E RF LN+NVL     P+V+ L   L+ WL
Sbjct: 301 AEDVRLILEPKSRTIDPALLMESVFKLTDLEVRFALNLNVLDPTGAPRVVGLKEALQIWL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HRR V+ RR++ R++ ++ R+E+L G ++AYLN+DE+I IIR ED PK  ++  FSLT+
Sbjct: 361 DHRRVVVVRRATTRLEHVEDRLEVLSGFMVAYLNLDEVIRIIRFEDHPKDELIKTFSLTD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE +I+ E   L  E++++++L+     QW ++  E+ +VK+ 
Sbjct: 421 RQAEAILNMRLRSLRKLEEMEIRDEQSRLEGERDELNALIADESLQWKKVDSEVADVKKR 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
           F  +T+LG+RRTTF +   AD A + ++A+I +EPIT+V+S  GW+R+LK H+ D++ + 
Sbjct: 481 FGPNTELGKRRTTFADAPAADLADMVEEALIPREPITIVLSRMGWVRALKGHTDDVTGIK 540

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
            K+GD    +L A TTD+IL+L+TDG+ YTL A  L  GRG GE ++LLID++ + + V 
Sbjct: 541 HKDGDETAFSLKAETTDKILMLTTDGRVYTLDASKLPGGRGFGEPVRLLIDMDESAEPVA 600

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
            F Y    KLL+ S+ G+ F+V E E+ A  R G+  L V    K  + + +TGD +AV+
Sbjct: 601 LFKYSPDRKLLLASTSGHGFVVAEKELPAIKRAGRQVLNVIDGHKAMMALPMTGDRIAVL 660

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           GEN+KLL+F+ D+IPEM RGKGVRL   K G ++D+  F   EGL  +D AGR +     
Sbjct: 661 GENKKLLVFAADEIPEMVRGKGVRLLGGKAGEVADITVFNAEEGLVRVDPAGRRH--LVE 718

Query: 725 DLLGWLGKRGGVGSLVPKGF 744
           D   + GKR   G L P+GF
Sbjct: 719 DWRYYEGKRAQAGKLAPRGF 738


>gi|254422070|ref|ZP_05035788.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335]
 gi|196189559|gb|EDX84523.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335]
          Length = 911

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 234/782 (29%), Positives = 385/782 (49%), Gaps = 45/782 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F
Sbjct: 4   PQERIVPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R+PLI+G GNFG+ID D  AA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRHPLINGHGNFGSIDNDPPAAMRYT 123

Query: 133 EARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +    +LQ ++ + VDF D ++    EPVV P++ P LL NG+SGIAVGMAT+I
Sbjct: 124 ESRLQALTGAALLQDIESETVDFADNFDGSQQEPVVLPARIPQLLINGSSGIAVGMATNI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +ALIDNP ++  +L+EYI GPDFPTG  I+ SR  I E+Y  GRG   
Sbjct: 184 PPHNLGEVIDGVVALIDNPALTSMELMEYIPGPDFPTGAQIIGSR-GIREAYATGRGSVT 242

Query: 252 VRARWCVEE----VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E            I++TE+PYQ  K+ LIEKIA+++   R+  + D+RDES  
Sbjct: 243 MRGVATIETQETRGRPDRETIIITELPYQTNKAALIEKIADMVNEHRLEGISDLRDESDR 302

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ +++  + ++  F +NM  L     PQ++ L   L+ +L  
Sbjct: 303 DGMRIVIELKRDAYPKVVLNNLYKQTPLQNNFGVNMLGLVNS-EPQLLSLLDFLQVFLDF 361

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R E + RR+ + ++    R  +L+G LIA  N+D +IA+IR        K  ++  +  +
Sbjct: 362 RIETITRRTQYELRKAQERDHLLQGYLIALDNLDAVIALIRGSADAASAKEELIESYGFS 421

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q DAIL ++LR L  LE  +I+ E + L  +   ++ +L +  +    I  E+ +++ 
Sbjct: 422 ATQADAILQMQLRRLTALEAEKIQQEHEALTEKIADLEDILANRDRILAIIKEEVIQIRN 481

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            ++       +         +  A  Q A++  E   +         +    +   S   
Sbjct: 482 AYANERRTLIKADENDLSDISLIANEQVAILVTEQGYIKRMLVDTFEAQNRATRGKSGTR 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
            K+ D ++  +   + D +L  S  G AY+L A  +       +   +  ++ +   + +
Sbjct: 542 MKDDDGIEHFITCCSHDHVLFFSDRGVAYSLRAYQIPESSRTAKGYPLVQMLPIPKEEKV 601

Query: 603 VTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +      +     L++++  G       S        G   + +   ++++ V   T D
Sbjct: 602 TSVIGVSEFSEDDYLVMLTQGGFIKKTALSAFNRIRTNGLIAISLEDGDELRWVRMATAD 661

Query: 660 H-VAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGG---------------ISDV 700
             V +  +    + F  D  Q+  + R  KGV+  S ++G                +   
Sbjct: 662 DSVLIGSQRGMTIHFKADHAQLRPLGRPTKGVKSMSLREGDQLISMDILPSQVVEEVEGA 721

Query: 701 I---------CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK-F 750
           I              +G   +  +     +        L  R G+G +  K F + G   
Sbjct: 722 IDDSDEDADELANADQGPWVLVVSSGGLGKRVPVSNFRLQNRAGMGLVAMK-FRKDGDEL 780

Query: 751 LS 752
           ++
Sbjct: 781 VA 782



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKV-SSEEKMKLV 653
           + ++D       D    +LVVSS G    V  S      R G     +K     +++  +
Sbjct: 724 DSDEDADELANADQGPWVLVVSSGGLGKRVPVSNFRLQNRAGMGLVAMKFRKDGDELVAL 783

Query: 654 VKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
                 D + +V +   ++  S+D I   SR   GV+LQ          +    
Sbjct: 784 RIAGPDDELMIVSQRGIIMRQSVDAISVQSRMATGVQLQRLDSDDAIAAVALVP 837


>gi|33861619|ref|NP_893180.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33634196|emb|CAE19522.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 867

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 236/794 (29%), Positives = 384/794 (48%), Gaps = 46/794 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           VD+ ++  +   + +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 5   VDSENSGLSENNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMY 64

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D
Sbjct: 65  ELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVD 124

Query: 123 GDSAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            D  AA RYTE+R+  + +  +L+ ++ + VDF D ++    EP V P++ P LL NG+S
Sbjct: 125 NDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPNVLPARIPQLLLNGSS 184

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +   A+I NP    ++L E I GPDFPTGG I+  R+ I E
Sbjct: 185 GIAVGMATNIPPHNLGELIDGLKAIIKNPSTEDKELFELIKGPDFPTGGQIL-GRDGIKE 243

Query: 242 SYRLGRGGFRVRARWCVEEVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
           +++ G+G   +R    +E++          +++TE+P+Q  K+ LIE+IA+L+  KR+  
Sbjct: 244 TFKSGKGSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNEKRLDG 303

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + DIRDES  D   ++    R   P +++ ++F ++ ++  F  N+  L     P  + L
Sbjct: 304 ISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKITPLQNNFSANILALV-NGEPTTLSL 362

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--- 414
             +L  +L  R E + RR+SF ++  + R  I+KGLL+A   +D II +IR+        
Sbjct: 363 RKMLDVFLEFRIETIKRRTSFLLRKAEERDHIIKGLLLALNAMDNIINLIRSAKDTNSAR 422

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             + +   L+  Q DAIL ++LR L  LE  +IKSE D L  +     ++LN  ++    
Sbjct: 423 EQLQNDHELSVIQADAILQMQLRRLTALEADKIKSEHDELTKKITDYKNILNDKERINEI 482

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  E+ ++ E FS                    A  +  ++      +         S  
Sbjct: 483 ILEELSKIDERFSSPRKTEILNLGGGLDDIDLIANERSVVLLTTAGYLKRMPVSEFESTS 542

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
             S   +    ++ D +K+ +  +  D +LL S  G AY LPA  +       +      
Sbjct: 543 RGSRGKAGTKNQQDDEVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTAKGTPSVQ 602

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ +   + I +      +D+ C LL+++  G       S        G   + +   + 
Sbjct: 603 LLPIPREEQITSLVSVDSFDNECYLLMLTKAGFIKRTPLSAFSKVRSNGLIAINLEEGDA 662

Query: 650 MKLVVK-VTGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +  V     GD V +       + F    +++  + R  +GV+  + K+G     +    
Sbjct: 663 LTWVRLSTEGDSVLIGSSRGMTIHFRLDTNELRPLGRTARGVKSMNLKEGDKLVSMDVLS 722

Query: 706 CE---------------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           C+                           G   + ++     +        L KR G+G 
Sbjct: 723 CDLVDQLANLEEEDIENENEEDLESKSSNGPWILVASAFGLGKRVPVTKFRLQKRAGMGL 782

Query: 739 LVPKGFPRSGKFLS 752
              K   +    + 
Sbjct: 783 RAIKFRIKDDSLVG 796



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVS-SEEKMKLVVKV-TGDHVAVVGENRK 669
           +LV S+ G    V  ++     R G     +K    ++ +  +  +  G+ + +V E   
Sbjct: 755 ILVASAFGLGKRVPVTKFRLQKRAGMGLRAIKFRIKDDSLVGLKVLGEGEELLLVTERGV 814

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           ++  + D+I + SR   GV+LQ   DG     +     E + 
Sbjct: 815 IVRTNADKISQQSRAATGVKLQRLDDGDHLSEVVLVPHEQIE 856


>gi|291288762|ref|YP_003505578.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809]
 gi|290885922|gb|ADD69622.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809]
          Length = 828

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 248/767 (32%), Positives = 402/767 (52%), Gaps = 37/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++  ++     +S+  +++  YL YA+S I  RA+PD+RDG KPVHRR + +MSEMG
Sbjct: 1   MSDTSKTID-----ISIEESVKNSYLDYAMSVIIGRALPDVRDGLKPVHRRALFSMSEMG 55

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           + +  A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG++DGDS
Sbjct: 56  VHYNKAYKKSARIVGDVIGKFHPHGDSAVYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDS 115

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++++ +L  +D+D VDF + Y+    EP V P++ P LL NGTSGIAV
Sbjct: 116 AAAMRYTEIRLSKISDDLLADLDKDTVDFSENYDGTMVEPTVLPTRIPALLVNGTSGIAV 175

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ EI  A   +ID P    E +L ++ GPDFPT G I+   + I  +YR 
Sbjct: 176 GMATNIPPHNITEIISALNYMIDEPGYDTEGILRHVSGPDFPTAG-IIMGSKDIQTAYRT 234

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RAR  +EE   G   I+V EIPY V K+ +IEKIA+L+  K+I  + D+RDES
Sbjct: 235 GRGSITIRARVLIEETKTGKPVIIVREIPYLVNKASMIEKIADLVQEKKITGITDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   V+    +  + D+++  ++  + ++T F  NM  +     PQ + L  IL+E+L
Sbjct: 295 DKDGIRVVIELKKGENVDVVLNRLYKFTQLQTSFGFNMVAIVD-GKPQTLSLREILEEFL 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            HR  V+ RR+ F ++  + R+ IL+GL+ A  NIDE+I  I+           + ++F 
Sbjct: 354 KHRVTVVTRRTQFLLRKAEARLHILEGLIKAVENIDEVIKTIKASKDTPAAKANLCAQFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            TE Q  +IL +RL+ L  LE  ++K E +N+L + E   S+L +     + I  E+++V
Sbjct: 414 FTEIQAQSILEMRLQKLTGLEIEKLKEEYENILKDIEYYKSILGNRSVMMSVIKDELQDV 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
            + +        RRT   E++        + +I      V +++ G+          + K
Sbjct: 474 LDKYGD-----DRRT---EIAPGLTEFEDEDLIPNNEKVVTMTHNGYIKATLLSSYVAQK 525

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                 +    K+ D ++  +      R++  +  GK + L    L   +   +   I  
Sbjct: 526 RGGKGKTGAGSKDEDFVERLIVTTNHTRLMFFTNTGKVHYLKVYALPEAQRDAKGRHISN 585

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + + +            L   +  G        E  +  R G   +K+   ++
Sbjct: 586 LLTLEPEEFVASVLALPAETDGKYLFFATKSGTIKKTSLEEFKS-GRSGIVAIKLRDGDE 644

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +      T +  V +  +  K + FS      M R   GVR  +       +++  ++  
Sbjct: 645 ILTADITTDEDTVILSTKAGKTIQFSSTDARPMGRSTSGVRGITL--EARDELMSMEVLT 702

Query: 708 GL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G    +      Y +        +  RGG G  + +  P++G  + +
Sbjct: 703 GAPYILSVTSAGYGKRTPVDEYRVQTRGGKGLKLCRVSPKTGFVVGA 749



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 8/185 (4%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +  +   KS    + A+  ++GD +  A      D ++L +  GK     + +      
Sbjct: 620 KKTSLEEFKSGRSGIVAIKLRDGDEILTADITTDEDTVILSTKAGKTIQFSSTDARPMG- 678

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV- 644
              +    I L    ++++  V      +L V+S G        E    TR GK  LK+ 
Sbjct: 679 RSTSGVRGITLEARDELMSMEVLTGAPYILSVTSAGYGKRTPVDEYRVQTRGGKG-LKLC 737

Query: 645 ----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
                +   +        D V ++  + K +   +  I +M R   GV+L    D  I  
Sbjct: 738 RVSPKTGFVVGAKQVTDNDDVMIITRSAKTIRTEVQGISKMGRDTMGVKLMDTGDDDIIA 797

Query: 700 VICFK 704
               K
Sbjct: 798 FAVIK 802


>gi|152963979|ref|YP_001359763.1| DNA gyrase subunit A [Kineococcus radiotolerans SRS30216]
 gi|151358496|gb|ABS01499.1| DNA gyrase, A subunit [Kineococcus radiotolerans SRS30216]
          Length = 910

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 240/786 (30%), Positives = 381/786 (48%), Gaps = 50/786 (6%)

Query: 6   ISNSNTLVE---ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +S S T      + V+ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 1   MSESTTEPPHPGDRVEQVDLQAEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMY 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G      + K AR+VG+V+G  HPHGD S+YD+LVRLAQ +  RYPL+ GQGNFG+  
Sbjct: 61  DGGYRPDRGYSKCARVVGDVMGHYHPHGDTSIYDALVRLAQDWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE RM  +A  +++ +DE+ VDF   Y+    EP V PS+FPNLL NG++G
Sbjct: 121 NDPAAAPRYTECRMAPLAMEMVRDIDEETVDFSPNYDGHTDEPDVLPSRFPNLLVNGSAG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ E A  L+DNP+ S E+     L  I GPDFPTG  ++     
Sbjct: 181 IAVGMATNIPPHNLREVAEGAKWLLDNPDASDEEQLAALLTRIKGPDFPTGA-LILGHRG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++YR GRG   +RA   VEE+ +G  C+VV+E+PYQV    L E IA L+   R+  +
Sbjct: 240 ISDAYRTGRGSITMRAVVEVEEI-QGRTCLVVSELPYQVNPDNLAENIANLVRDGRLTGI 298

Query: 299 EDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            D++D ++ +  + ++    R     +++ +++  + ++T F  NM  L    VP+ +P+
Sbjct: 299 ADVQDHTSGKTGQRLVIILRRDAVAKVVLNNLYKHTQLQTNFGANMLALVD-GVPRTLPI 357

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
              LK W+AH+ +V+ RR+ FR++  + R  IL+ LL A   +DE+IA+IR     +   
Sbjct: 358 HAFLKHWIAHQLDVIVRRTRFRLRKAEERAHILRALLKALDALDEVIALIRASPTVESAR 417

Query: 418 VSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                   + E Q  AIL ++LR L  LE  +I  E D L+      + +L   ++Q   
Sbjct: 418 DGLMGLLEIDEIQSRAILEMQLRRLAALERQRITDEYDELMRMIGDFNDILARPERQRQI 477

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           +  E+ E+ E +        R+T              + +I  E + V ++  G+ +  K
Sbjct: 478 VGDELAELVERYGDE-----RKTQILPFEGDMT---VEDLIPVEDVVVTVTRGGYAKRTK 529

Query: 535 SHSVDLSAL--------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
           +                  +E D ++      T   +L  +  G+ Y      L      
Sbjct: 530 TDLYRAQRRGGRGVRGASLREDDVVEHFFTTTTHHWLLFFTNLGRVYRAKGYELPEGGRD 589

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           G G+ +  L+     + IV       Y+    L++ +  G       SE  +N   G   
Sbjct: 590 GRGQHVANLLAFQPGERIVAVLDIEDYEQAPYLVLATRGGIVKKTRLSEYDSNRSGGLIA 649

Query: 642 LKVSS----------EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRG-KGV 687
           + + S          ++++     V+ D  + +V      + F      +  M R   GV
Sbjct: 650 INLRSHPGADGTEEVDDELFAATLVSEDEDLFLVSRKGMSVRFEATDENLRPMGRATSGV 709

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               ++       +     + L         Y +           RGG+G  V K     
Sbjct: 710 TGMKFRGEDELLAMAVA-RDDLFVFVVTELGYAKRTKIEHYRKQGRGGLGIKVAKLTEER 768

Query: 748 GKFLSS 753
           G  + +
Sbjct: 769 GDLVGA 774



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 6/149 (4%)

Query: 564 LLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
            L+S  G +    A +      G   +    +      +++   V      + VV+  G 
Sbjct: 681 FLVSRKGMSVRFEATDENLRPMGRATSGVTGMKFRGEDELLAMAVARDDLFVFVVTELGY 740

Query: 623 AFIVEESEIIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
           A   +        R G      K++    + +  +     D V VV +  +++   +D++
Sbjct: 741 AKRTKIEHYRKQGRGGLGIKVAKLTEERGDLVGALTVSEDDEVLVVMQAGRVVRSRVDEV 800

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           P+  R   GV     + G     I   + 
Sbjct: 801 PDKGRDTMGVTFARPETGDRILAITRNVE 829


>gi|38232651|ref|NP_938418.1| DNA gyrase subunit A [Corynebacterium diphtheriae NCTC 13129]
 gi|38198909|emb|CAE48520.1| DNA gyrase subunit A [Corynebacterium diphtheriae]
          Length = 856

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 236/778 (30%), Positives = 395/778 (50%), Gaps = 40/778 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D +        + V  + L   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++A
Sbjct: 1   MSDDLLGGDG---YDRVHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYA 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     ++ KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYP++ GQGNFG+
Sbjct: 58  MYDSGYRPDRSYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPMVDGQGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTE R+T +A  +++ + E+ VDF   Y+ +  EP V PS+ PNLL NG+
Sbjct: 118 RGNDGPAAMRYTECRLTPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGS 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESR 236
           +GIAVGMAT+IP HN++E+ +A   L+DNPE      +E  ++Y+ GPDFPT G IV   
Sbjct: 178 NGIAVGMATNIPPHNLRELGDAIFWLLDNPEADEASALEACMKYVKGPDFPTAGQIV-GS 236

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I ++Y  GRG  R+R    +EE G     IV+TE+PYQV    +I  IAE +   ++ 
Sbjct: 237 QGINDAYTTGRGSIRMRGVTSIEEEG-NRQIIVITELPYQVNPDNMISNIAEQVRDGKLA 295

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            +  I DE S      ++    R   P +++ +++  S ++T F  NM  +    VP+ +
Sbjct: 296 GISKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVD-GVPRTL 354

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-- 413
            LD +L+ ++ H+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR       
Sbjct: 355 RLDQMLRHYVTHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDI 414

Query: 414 -KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++   ++ E Q DAIL ++LR L  LE  +I  EL  +  E      +L   ++Q 
Sbjct: 415 ARTGLMELLTVDEIQADAILAMQLRRLAALERQKIVDELAEIELEIADYKDILARPERQR 474

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +  E+ E+ + +        RRT       A     ++ +I +E + V I++ G+ + 
Sbjct: 475 AIVRDELAEIVDKYGD-----DRRTQII---AATGDVTEEDLIARENVVVTITSTGYAKR 526

Query: 533 LKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-- 582
            K  +          +     K+ D ++    + T D IL  +  G+ Y L A  L    
Sbjct: 527 TKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVSSTHDWILFFTNFGRVYRLKAYELPEAS 586

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L++    + I        Y+    L++ +++G       S+  +N   G 
Sbjct: 587 RTARGQHVANLLEFQPEERIAQVIQIQSYEDAPYLVLATAQGRVKKSRLSDYESNRSGGL 646

Query: 640 TFLKVSSEEKMKLVV-KVTGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
             + ++  +K+         D + +V E  + + F+ +   +  M R   GV+   +K  
Sbjct: 647 IAINLNEGDKLIGAALCDNDDDLLLVSEEGQSIRFNANDDQLRPMGRATAGVKGMRFKGD 706

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +     +    + ++G  Y +  +        RGG G L  K  P+ GK +++
Sbjct: 707 DQLLAMTVVKPDAFLLVATSG-GYGKRTSLDEYSPQGRGGQGVLTFKYTPKRGKLIAA 763



 Score = 84.1 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 6/142 (4%)

Query: 566 LSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +S +G++    A +      G   A    +    +  ++   V      LLV +S G   
Sbjct: 672 VSEEGQSIRFNANDDQLRPMGRATAGVKGMRFKGDDQLLAMTVVKPDAFLLVATSGGYGK 731

Query: 625 IVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE 680
                E     R G+  L         K+   V V   D +  +     ++   ++QI  
Sbjct: 732 RTSLDEYSPQGRGGQGVLTFKYTPKRGKLIAAVVVDEDDEILAITSAGGVIRTVVNQIRP 791

Query: 681 MSRGK-GVRLQSYKDGGISDVI 701
            SR   GVRL + +DG     I
Sbjct: 792 SSRATMGVRLVNLEDGVELLAI 813


>gi|319898825|ref|YP_004158918.1| DNA gyrase subunit A [Bartonella clarridgeiae 73]
 gi|319402789|emb|CBI76338.1| DNA gyrase subunit A [Bartonella clarridgeiae 73]
          Length = 923

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 259/848 (30%), Positives = 406/848 (47%), Gaps = 102/848 (12%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++  T  E +    ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F  +++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ ++AE +L  +D++ +DF+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKIAEELLADIDKETIDFQDNYDGREREPVVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I++++++E I GPDFPTGGII+  R  I  
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIIL-GRSGIRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EEV      I+V+EIPYQ+ K+ +IEKIAEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVDIEEVRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    R    D+++  ++  + ++T F  N+  L+ G  P+ M L  +L
Sbjct: 300 RDESDRDGYRVVIELKREAVADIVLNQLYHYTPLQTSFGCNIVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + +++ R EV+ RR+ + ++    R  IL GL IA  NIDEIIA+IR    P+       
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHILVGLAIAVANIDEIIALIREAPDPQTARLQLM 418

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWLAADVAFLVKLIDDPRHIIHENNTYNLSEEQARAILELRLQRLTALGRDEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +      +L S  +    +  E+  ++E F+               +         
Sbjct: 479 KIGVDITDYLHILASRLRIMGIVKDELSTLREEFAAPRRTIFGFGNIEMDNEDLIVPEDM 538

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            +       +        R+ +      S +  K+ D +     ++T   +L  S+ G  
Sbjct: 539 VVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIV 598

Query: 573 YTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAF 624
           Y      L   + +  G A+  ++ L   + I T               ++  +++G   
Sbjct: 599 YKEKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSKLDVMFATTRGTVR 658

Query: 625 IVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM- 681
             + S+ +   R GK  +K+    + +  V   T  D V +   N + + F +  +    
Sbjct: 659 RNKLSDFVQVNRNGKIAMKLDEEGDAILSVETCTERDDVVLTTANGQCIRFPVIDVRVFA 718

Query: 682 SRGK-GVRLQSYKDGGIS-----------------------------------DVICFKI 705
            R   GVR  +  DG                                      DV+    
Sbjct: 719 GRNSVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRAAGADAEDVVIVDE 778

Query: 706 CEGLT------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLV--PKGFP 745
               T                   +  +   Y +  +     +  RGG G     P    
Sbjct: 779 NGEGTETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKTA 838

Query: 746 RSGKFLSS 753
             GK +++
Sbjct: 839 EIGKLVAA 846



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 8/107 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              LL VS  G        E   + R GK        K +   K+     V   D + +V
Sbjct: 799 EQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKTAEIGKLVAAFPVKAQDQIMLV 858

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
            +  +L+   I+ I    R  KGV + +   G  +  V      E  
Sbjct: 859 SDGGQLIRIPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISDPEDD 905


>gi|254457652|ref|ZP_05071080.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1]
 gi|207086444|gb|EDZ63728.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1]
          Length = 829

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 251/763 (32%), Positives = 415/763 (54%), Gaps = 32/763 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  + ++ +++   L+  YL Y++S I  RA+PD+RDG KPVHRRI++AM ++ L  G
Sbjct: 3   DLLNNDEIQTINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSHG 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           A FKKSARIVG+VIG+ HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG++DGDSAAA 
Sbjct: 63  AKFKKSARIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMQLVDGQGNFGSVDGDSAAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT+ A  +L+ ++++ V+  D Y+    EP V P++ PNLL NG+SGIAVGMAT
Sbjct: 123 RYTEARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN +EI     AL+ NP+IS+ +L+E+I  PDFPTGG I+  ++ I+++Y  GRG 
Sbjct: 183 NIPPHNPREILTGLKALLANPDISLVELMEFIKAPDFPTGG-IIFGKKGIMDAYETGRGR 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA+  + E       IV+ E+PYQV K+RLIE IA L+  K I  + ++RDES  D 
Sbjct: 242 IKVRAKTHI-EQKSKKEVIVIDELPYQVNKARLIENIANLVKDKMIEGVSEVRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    ++++ ++F  + M+T F + + +  + + P++  +  ILK ++ HR+
Sbjct: 301 MRVVIELKRDAMSEIVLNNLFKQTSMQTTFGI-IMLSILNQEPRIFGIITILKHFINHRK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            ++ RR+ F ++    R  IL+GL  A   I+++I +IR        K  +VS F  ++ 
Sbjct: 360 TIIIRRTIFDLEKAKARAHILEGLKKAISIIEDVIRVIRASKNEELAKENLVSEFDFSDI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  +I+ +RL  L  LE  +I++EL  L+   E ++S+L S +   + IA E  EV + +
Sbjct: 420 QAASIVAMRLGRLTGLEIEKIENELLELMTLIEYLESILRSEEVLHSIIAEEFDEVLDTY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
             +     RRT              + +I  EP+ V I++RG+I+          K    
Sbjct: 480 GSNE----RRTEIE---DDYDDIDIEDLIPNEPMVVTITHRGYIKRVPLTLYEKQKRGGK 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
             +A+   E D ++     +T D +L ++  G+ + L    +        G+A+  L++L
Sbjct: 533 GKTAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEGSRIAKGKAVVNLLNL 592

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I +      +     L+  + KG       SE       G   + +  ++ +   
Sbjct: 593 MADERIRSIIPTTDFSEDKGLVFFTQKGVVKRTNLSEFSNIRSNGVRAIVLDEDDALITA 652

Query: 654 VKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEG 708
                   ++ ++ +  + + F I++  E  R  +GVR   +K  +  + D       + 
Sbjct: 653 KIADQSIKYLFIMTKLAQCIKFDIEKTREQGRSTRGVRGIKFKHPEDEVIDANIIA-NDE 711

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              +  A +   +  +     L  RGG G +  K   ++GK++
Sbjct: 712 QEILIVAEKGIGKRTDAGEYRLTNRGGSGVIAMKMTSKTGKYV 754



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV--SSEEKMKL 652
             ++ I    + +   ++L+V+ KG     +  E     R   G   +K+   + + +  
Sbjct: 697 PEDEVIDANIIANDEQEILIVAEKGIGKRTDAGEYRLTNRGGSGVIAMKMTSKTGKYVVG 756

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            + V     +  + +  K++   +  I + SR   GV +   K   +++V
Sbjct: 757 CLMVDESMDMMALTKAGKMIRVDMQTISKSSRNTSGVYIV--KGDDVANV 804


>gi|218441567|ref|YP_002379896.1| DNA gyrase subunit A [Cyanothece sp. PCC 7424]
 gi|218174295|gb|ACK73028.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7424]
          Length = 853

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 248/796 (31%), Positives = 391/796 (49%), Gaps = 64/796 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E +    L   + + YL YA+S I  RA+PD RDG KPVHRRI+ AM E+GL    
Sbjct: 2   TTHPERIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE+R+  ++   +L+ ++ + VDF D ++    EP+V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTESRLQNLSMNALLRDIEAETVDFIDNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ + A+A+I NPEI+  +L++YI GPDFPTG  I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELVDGAIAMIHNPEITNTELMKYIPGPDFPTGAQIL-GRSGIKDAYTNGRGS 240

Query: 250 FRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I+VTE+PYQ  K+ LIEKIAEL+  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETIQQRGRPEREAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R   P +++ +++  + ++  F  NM  L     PQV+ L   L+ +L
Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPIQANFGANMLALV-NGEPQVLTLKDFLEVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
             R EV+ RR+++ ++  + R  +L+GLL+A  N+D II +IR+             +F 
Sbjct: 360 DFRVEVITRRTNYELRKAEERDHVLQGLLVALANLDAIIQLIRHAADTATAKRELVDQFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I++E + LL +   +  +L   ++  + I  E+ ++
Sbjct: 420 LSEVQADAILQMQLRRLTALESEKIQAEHEELLQKITDLRDILERRERVDHIIEEELNQL 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K   +       RRT   +    D   +   +I  E   ++++ +G+I+ +   +    +
Sbjct: 480 KTTHATP-----RRTEIIQ---EDGELIDLDLIANEQAVILLTEQGYIKRMPVSTFGQQS 531

Query: 543 L--------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                      KE D ++  L     D IL  S  G  Y L A  + S      G  I  
Sbjct: 532 RATRGKSAAKIKEDDGVEHFLSCCDHDYILFFSDRGVVYVLGAYQIPSSSRTARGVPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +  N+ I +      +   C L++++ +G       S        G   + +S  ++
Sbjct: 592 MLPIPKNEKITSMLAVSEFSEDCYLIMLTRQGYIKKTVLSAYSNIRANGLIAITLSEGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++ V      D + +       + F  D  Q+    R  +GV+    K       +    
Sbjct: 652 LRWVRLAREEDSIIIGTRKGMAIHFKADSEQLRPTGRTARGVKSMKLKGTDEIISVDILP 711

Query: 706 CE-----------------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
            +                             G   +      Y +        L KR G+
Sbjct: 712 SQVVANIATSEDEVEDETLETEEIISEETNVGPWVLAITTGGYGKRVPVSQFRLQKRAGM 771

Query: 737 GSLVPKGFPRSGKFLS 752
           G    +      + ++
Sbjct: 772 GVKAIRFKNDHDQLVA 787



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLVVKVT-GDHVAVVGENRK 669
           +L +++ G    V  S+     R G     ++  ++ +++  +  V   D + +V     
Sbjct: 746 VLAITTGGYGKRVPVSQFRLQKRAGMGVKAIRFKNDHDQLVAIHVVNQDDEMMMVTNRGI 805

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  ++D I   SR   GVR+Q   +      +     
Sbjct: 806 IIRQAVDAITPQSRMATGVRVQRLDEDDAIAAVALVPP 843


>gi|302543958|ref|ZP_07296300.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302461576|gb|EFL24669.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 870

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 249/787 (31%), Positives = 401/787 (50%), Gaps = 46/787 (5%)

Query: 1   MGVDNISNSNTLVEE----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           M  +N   +   + E     ++AV L   ++  YL YA+S I  RA+PD+RDG KPVHRR
Sbjct: 1   MADENNPTTPDELAEGAAMRIEAVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   G
Sbjct: 61  VLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQSWSMRMPLVDSNG 120

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+   D AAA RYTE +M  +A  +L+ +DE+ VDF+D Y+  + EP V P++FPNLL
Sbjct: 121 NFGSPGNDPAAAMRYTECKMAPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLL 180

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGII 232
            NG++GIAVGMAT+IP HN++E+ E A   + NPE + E+    L++ I GPDFPTG  +
Sbjct: 181 VNGSAGIAVGMATNIPPHNLREVAEGAQWFLANPEATQEELLDALVDRIKGPDFPTGA-L 239

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
           V  R+ I E+YR GRG   +RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+  
Sbjct: 240 VVGRKGIEEAYRTGRGSITMRAVVEVEEI-QGRQCLVVTELPYQVNPDNLAQKIADLVKD 298

Query: 293 KRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            RI  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L    V
Sbjct: 299 ARIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GV 357

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+ + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D
Sbjct: 358 PRTLSLDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSD 417

Query: 412 KPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                    +    + E Q +AIL ++LR L  LE  +I  E D L A+  + +++L S 
Sbjct: 418 TVDTARGGLMELLEIDEIQANAILEMQLRRLAALERQKITQEHDELQAKINEYNAILASP 477

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++Q   I+ E+  + E F        RR+              + +I +E I V I+  G
Sbjct: 478 ERQRQIISEELTALVEKFGD-----DRRSKLVPFDGDMS---IEDLIAEEDIVVTITRGG 529

Query: 529 WIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +++          K     +     K+ D +     + T   +L  +  G+ Y   A  L
Sbjct: 530 YLKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYEL 589

Query: 581 LS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
                   G+ +  L+    ++ I        YD+   L++ +  G        +  +  
Sbjct: 590 PDAGREARGQHVANLLAFQPDEQIARILAIRDYDAVPYLVLATKSGLVKKTPLKDYDSPR 649

Query: 636 RKGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KG 686
             G   + +       E+++     V+  D + ++ +  + + F+     +  M R   G
Sbjct: 650 SGGVIAINLREMEDGREDELIGAELVSADDDLLLISKKAQSIRFTATDESLRPMGRATSG 709

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           V+  S+++      +   +  G     +    Y +  N     +  RGG+G    K    
Sbjct: 710 VKGMSFREDDELLSMNV-VRPGTFVFTATDGGYAKRSNVDEYRVQGRGGLGIKAAKIVED 768

Query: 747 SGKFLSS 753
            G  + +
Sbjct: 769 RGSLVGA 775


>gi|83814088|ref|YP_446304.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855]
 gi|83755482|gb|ABC43595.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855]
          Length = 910

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 252/816 (30%), Positives = 397/816 (48%), Gaps = 86/816 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  GA +K
Sbjct: 5   DSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGANYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD+LVR+AQ F  RYPL  GQGNFG++DGDSAAA RYTE
Sbjct: 65  KSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT++AE +L  + ++ VD ++ ++    EP V P+ FPN+L NG  GIAVGMAT IP 
Sbjct: 125 ARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATKIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +A ID+P+I I+ L++++  PDFPTGG I+     + E+Y  GRG   +R
Sbjct: 185 HNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGG-IIYGYAGVYEAYHTGRGRVVMR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+   EEV  G   +VVTE+PYQV KSR +E+IA+ +  +RI  + D+RDES  D   ++
Sbjct: 244 AKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + +++   ++  S ++  F +NM  L  G  PQV+ L   ++ ++ HR E++ 
Sbjct: 304 IELKQGANAEIVKNQVYKHSRLQDTFGVNMVALV-GGRPQVVTLKDAIRHYVDHRHEIVV 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------ 415
           RR+ + +     R  IL+GL +A  ++D +IAIIR+                        
Sbjct: 363 RRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDDD 422

Query: 416 ----------------------------------VMVSRFSLTENQVDAILNLRLRSLRK 441
                                                    LTE Q +AIL LRL  L  
Sbjct: 423 LRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLTG 482

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I  E ++++ +  +   +LNS  ++   I  E+  VKE F        RRT    
Sbjct: 483 LEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDE-----RRTEI-- 535

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKI 553
                   + + +IE++ + V I+N+G  +     +          +     +E D ++ 
Sbjct: 536 DYTGGDDIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEH 595

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDST 611
               H+ D +LL +  G+ + L    +  G    +  +I+ LID++ +  +         
Sbjct: 596 LYVCHSHDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKE 655

Query: 612 ----------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                       +L  + +G                G   +K+   +++       GD+ 
Sbjct: 656 NFEDEAFLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNT 715

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKIC--EGLTWIDSAG 716
           V V     + + F       M R  +GVR      D  +  +I       + L  +  A 
Sbjct: 716 VVVASSGGRAVHFDEGDARPMGRNTRGVRGMELPGDQELVGMISVPPAMHDDLDVLAIAE 775

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +        +  RGG G +      R+G  +S
Sbjct: 776 HGYGKRTALSDYRVQGRGGKGLITLNRTDRTGALVS 811



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 86/231 (37%), Gaps = 11/231 (4%)

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
              D  R   +  + +  D+A L    +        +         +  S  +  +   E
Sbjct: 641 DPDDRVRAVISVSKENFEDEAFLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDE 700

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD L  A      + +++ S+ G+A     G+      +   ++ + +L  +Q++V    
Sbjct: 701 GDQLIEASLTGGDNTVVVASSGGRAVHFDEGDARPMGRNTRGVRGM-ELPGDQELVGMIS 759

Query: 608 YD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD- 659
                     +L ++  G       S+     R GK  + ++  ++   +  +  V GD 
Sbjct: 760 VPPAMHDDLDVLAIAEHGYGKRTALSDYRVQGRGGKGLITLNRTDRTGALVSIKGVLGDE 819

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEG 708
            + V+ E   ++   + +I  M R  +GV++   KDG  I+DV      + 
Sbjct: 820 DLMVITEGGIMIRTRVGEISTMGRNTQGVQVIDLKDGDAIADVTRVADTDE 870


>gi|300934343|ref|ZP_07149599.1| DNA gyrase subunit A [Corynebacterium resistens DSM 45100]
          Length = 836

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 231/778 (29%), Positives = 389/778 (50%), Gaps = 39/778 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D     N    + V+ + L+  ++  Y+ YA+S I  RA+P++RDG KPVHRRI++A
Sbjct: 1   MSDDTTGGENLF--DRVEPIDLQKEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G      + KSA+ V + +G  HPHGD ++Y +LVR+AQP+  RYPL+ GQGNFG+
Sbjct: 59  MYDNGYRPERGYVKSAKPVADTMGNYHPHGDLAIYGTLVRMAQPWAMRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA RYTE RMT +A  +++ + E+ VDF+  Y+ +  EPV+ PS+ PNLL NG+
Sbjct: 119 RGNDGAAAMRYTECRMTPLAMEMVREIRENTVDFQPNYDGKTKEPVILPSRVPNLLMNGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN+ E+ +A   L+DN       ++E  ++ + GPDFPT G ++   
Sbjct: 179 GGIAVGMATNIPPHNLNELADAIFWLLDNHEAEEAEALEACMKRVKGPDFPTAG-LIVGD 237

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I ++YR GRG  R+R    +EE G     IV+TE+PYQV    L+  IAE +   +I 
Sbjct: 238 KGIQDAYRTGRGSIRMRGVTSIEEEG-NRQVIVITELPYQVNPDNLVHNIAEQVRDGKIA 296

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            +  I DE S      ++    R   P +++ +++  S ++T F  NM  +    VP+ +
Sbjct: 297 GIARIDDESSDRVGLRIVVTLKRDAIPRVVLNNLYKHSQLQTSFGANMLSIVD-GVPRTL 355

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-- 413
            LD +L+ ++ H+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR       
Sbjct: 356 RLDQMLRYYVKHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDALDEVIALIRRSQTVDI 415

Query: 414 -KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q +AIL ++LR L  LE  +I   L  +      +  +L   ++Q 
Sbjct: 416 AREGLIDLLDIDEIQANAILEMQLRRLAALERQKIIDALAEIEETIADLKDILARPERQR 475

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
           + +  E+ E+ E F        RRT       A     ++ +I +E + V I++ G+ + 
Sbjct: 476 DIVRGELEEIVEKFGDE-----RRTKIV---AASGDVSEEDLIARENVVVTITSTGYAKR 527

Query: 533 LKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-- 582
            K  S          +     K+ D ++      T D IL  +  G+ Y L A  L    
Sbjct: 528 TKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNFGRVYRLRAFELPEAS 587

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L++    + I        Y+    L++ +S G       ++  +    G 
Sbjct: 588 RTARGQHVANLLEFQPGEQIAQVIQIQSYEDAPYLVLATSHGRVKKSRLTDYDSPRSGGL 647

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
             + ++  +++      T  D + +V E  + + F+ D   +  M R   GV+   +++ 
Sbjct: 648 IAINLNEGDRLVGAQLCTAEDDLLLVSEEGQAMRFTADDEVLRPMGRATAGVKGMRFRED 707

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +   + E      +    Y +           RGG+G +  K   + GK + +
Sbjct: 708 DQLLALTV-VQEDAYLFVATSGGYGKRTKMEEYPAKGRGGLGVVTFKYDKKRGKLIGA 764


>gi|227822110|ref|YP_002826081.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
 gi|227341110|gb|ACP25328.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
          Length = 927

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 245/856 (28%), Positives = 403/856 (47%), Gaps = 119/856 (13%)

Query: 6   ISNSNTL----VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++  +T         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ M
Sbjct: 1   MTEQSTPGGGKTPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+G+D+   + K AR+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ + A  +L  +D++ VDFRD Y+    EPVV P+KFPNLL NG  
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+    +ALID+P I + +L++ + GPDFPTG  ++  R  I +
Sbjct: 181 GIAVGMATNIPPHNLSEVINGCIALIDDPAIELPELMQIVPGPDFPTGA-LILGRAGIRQ 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 240 AYETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      V+    R  + ++++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 300 RDESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + ++A R EV+ RR+ + ++    R  +L GL IA  NIDE+I +IR+   P+       
Sbjct: 359 RAFVAFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRHAPDPQTAREQLM 418

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       ++L+E Q  AIL+LRL+ L  L   +I  EL+
Sbjct: 419 ERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L+S  +    +  E+  V++ F        RRT   E          +
Sbjct: 479 KIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTP-----RRTEIAE---GGPDMDDE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  ++ D +     A+T   +L
Sbjct: 531 DLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMSTRDEDFVTRLFVANTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L H + I T               ++ 
Sbjct: 591 FFSSRGIVYKEKVWRLPIGTPQSRGKALINMLPLEHGERITTIMPLPEDEATWENLDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 651 STTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEFDDVVLTTAVGQCIRFP 710

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  S  DG     +                               
Sbjct: 711 VSDVRVFAGRNSIGVRGISLGDGDRIISMAILAHIEAEPWERAAYLKRSAAERRATTGED 770

Query: 706 -------------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                                          +  + R + +  +        RGG G   
Sbjct: 771 EEIVLVGEEVANGGELSNERYEELKAREQFVLTLSERGFGKRSSSYDFRTSGRGGKGIRA 830

Query: 741 PKGFPRS---GKFLSS 753
                ++   G+ +++
Sbjct: 831 TDTS-KTAEIGELVAA 845



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L +S +G        +   + R GK        K +   ++     V   D + +V
Sbjct: 798 EQFVLTLSERGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPVEHNDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDVICFKICEG----LTWIDSAG 716
            +  +L+   +D I   SR  KGV + S  KD  +  V      +G       + +  
Sbjct: 858 SDGGQLIRVPVDGIRLASRATKGVTIFSTAKDEKVVSVERISEPDGEDEIEEIVTAGE 915


>gi|284028010|ref|YP_003377941.1| DNA gyrase subunit A [Kribbella flavida DSM 17836]
 gi|283807303|gb|ADB29142.1| DNA gyrase, A subunit [Kribbella flavida DSM 17836]
          Length = 907

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 221/779 (28%), Positives = 383/779 (49%), Gaps = 41/779 (5%)

Query: 6   ISNSN-TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++ +  +   + ++ + L+  +++ YL YA++ I  RA+P++RDG KPVHRRI++AM + 
Sbjct: 1   MTETPISPGHDRIEPLDLQTEMQQSYLDYAMAVIVGRALPEVRDGLKPVHRRILYAMYDG 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      F K +RIVG+V+G+ HPHGD ++YD+LVRLAQP+V R P+I  QGNFG+   D
Sbjct: 61  GYRPDRGFSKCSRIVGDVMGQYHPHGDSAIYDTLVRLAQPWVMRAPMIQSQGNFGSPGND 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE R+  +A  +++ +D++ VDFR  Y+    EPV+ PS+FPNLL NG++GIA
Sbjct: 121 PAAAMRYTECRLAPLAMEMVRDIDQETVDFRPNYDGRSQEPVILPSRFPNLLVNGSAGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIV 240
           VGMAT IP HN++E+  AA   ++NP+ S E+     +E+I GPDFP G  ++   + I 
Sbjct: 181 VGMATQIPPHNLREVAAAANWCLENPDASQEEVLAACMEHIKGPDFPNGA-LIVGYKGID 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA   +EE  +G   +VV+E+PY V    L +KIAEL+   ++  + D
Sbjct: 240 DAYRTGRGSVTMRAVVDIEEDAKGRTSLVVSELPYMVNPDNLAQKIAELVNTGKMTGIAD 299

Query: 301 IRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           IRD+ S+   + ++    R   P +++ +++  + ++  F  NM  L    VP+ + LD 
Sbjct: 300 IRDDTSSRTGQRLVIVLKRDAQPRVVLNNLYKHTQLQDTFGCNMLALVD-GVPRTLSLDL 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +  W+ H+ EV+ RR+ +R++  ++   + +G + A   +DE+IA+IR           
Sbjct: 359 FITHWIDHQIEVIQRRTRYRLREAEKNAHVFRGYVKALDALDEVIALIRRSPDVDEARQG 418

Query: 420 RF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 + E Q  AIL+++LR L  LE  +I   L+ L A    ++ +L    +Q + + 
Sbjct: 419 LISLLDIDEIQAQAILDMQLRRLAALERQKIIDRLNELEAVIADLEDILADPVRQRHIVR 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ E+ + F        RRTT      AD     Q ++  E + V I+  G+ +  K+ 
Sbjct: 479 DELAEIVDKFGD-----DRRTTII---AADGDLSVQDLVPDEDVVVTITRGGYAKRTKTD 530

Query: 537 --------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
                      +     +  D +           +L  +T G+ Y      L       +
Sbjct: 531 LYRVQNRGGKGVRGATMRAEDEIGHFFATTNHHWMLFFTTKGRVYRAKVWQLPESARDAK 590

Query: 589 --AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              +  L+    +++I        YD    L++ + KG        +  +  + G   + 
Sbjct: 591 GSHVAGLLSFQPDEEIAQVLTLRDYDQADYLVLATKKGLVKKTPLRDYDSARQSGIIAVN 650

Query: 644 VSS-EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGIS 698
               ++++      +  D + +V +  + + F+ +   +  M R   GV    ++ G   
Sbjct: 651 FREADDELIGADLASAEDDLLLVSKKGQSIRFTANDEQLRPMGRATSGVTGMKFRAGDEL 710

Query: 699 DVICF----KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +         +           Y +           RGG+G    K     G  + +
Sbjct: 711 LSMSVIRAGSEEDTQFVFTVTDAGYAKRSRVSEYRQQGRGGLGIKAVKLNDERGSLVGA 769



 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLV-VKVTGDHVAVV 664
           + T  +  V+  G A     SE     R G     V   ++   +    + V  D V  +
Sbjct: 722 EDTQFVFTVTDAGYAKRSRVSEYRQQGRGGLGIKAVKLNDERGSLVGALIVVDSDQVLAI 781

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             + +++   +D +P   R   GVR      G    V+       LT 
Sbjct: 782 KTSGQVVRSRVDSVPVKGRDTMGVRFAGV--GASDAVVAIARNTDLTV 827


>gi|238020191|ref|ZP_04600617.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147]
 gi|237868585|gb|EEP69589.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147]
          Length = 915

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 245/840 (29%), Positives = 406/840 (48%), Gaps = 103/840 (12%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           SN +   +E +  VSL   +++ YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  
Sbjct: 4   SNDHQFAKETIA-VSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELKN 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++ +A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DGD+A
Sbjct: 63  NWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSLRYMLVDGQGNFGSVDGDAA 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM ++A  +L  ++E+ V+F D Y+  + EP+V P++FP LL NG+ GIAVG
Sbjct: 123 AAMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEQEPLVLPTRFPALLVNGSEGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ +   A L L+  PE  I +L++ I  PDFPTG  I      +   Y+ G
Sbjct: 183 MATNIPPHNLSDTISACLHLLHQPEADINELIDIIKAPDFPTGATIY-GLTGVRAGYQTG 241

Query: 247 RGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           RG   +RA+  +E +G+      I+V EIPYQV K++L+EKI EL+  K I  + ++RDE
Sbjct: 242 RGRVVIRAKTHLEPIGKSGEREAIIVDEIPYQVNKAKLVEKIGELVREKTIEGIAELRDE 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R+ + ++++  ++ L+ ++  F +NM  L     P+++ L  IL E+
Sbjct: 302 SDKDGTRIVIELKRNENAEVILNQLYKLTQLQDTFGINMVALVD-GQPRLLNLKQILSEF 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------- 416
           L HRREV+ RR+ FR++       I +G  +A  NIDE+IA+I+     +          
Sbjct: 361 LRHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASSDVEAAREALLGRA 420

Query: 417 -------------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L++ Q  AIL + LR+L  L++ 
Sbjct: 421 WQSSLVSEMLGRSDLDLTQARPEWLPENRGLQADGYWLSDEQARAILRMSLRNLTGLDQD 480

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I  E   L+A    +  +L   ++    I  E+ E+K  F        RR+     +  
Sbjct: 481 EIVKEYKELMAIIVDLLDILAKPERVRQIIEDELVEMKSQFGDE-----RRSEI--NAFG 533

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHA 557
                 + +I    + V +++ G+I++  +              A   K+ D ++    A
Sbjct: 534 GGDIADEDLIPPRDMVVTLTHGGYIKTQPTSDYQAQRRGGRGKQAAATKDEDFIETLFIA 593

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
           +T D ++  +  G+ + +    L        G  I  +I L+ N+ +        +    
Sbjct: 594 NTHDYLMCFTNLGRCHWIKVYRLPEGGRNSRGRPINNVIQLDENEKVSAILPVREFPENE 653

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            +   ++ G    V+ S     + KG   + +   + +   VK +G D + +     K L
Sbjct: 654 YVFFATALGMVKKVQLSAFKNVSSKGIKAIALKEGDSLIGAVKTSGADDIMLFSNLGKAL 713

Query: 672 IFSI-------------DQI-PEM-------------SRGKGVR----------LQSYKD 694
            F+               ++  EM               G GVR               +
Sbjct: 714 RFNEYWAGKADAADEDDSELEAEMQPENDADNETAAPKSGNGVRPSGRGSGGLRGMRLPE 773

Query: 695 -GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            G I  ++  +   GL  + +    Y +           +GG G++      R+G  +++
Sbjct: 774 NGRIVSLLVAQKNCGLQVLTATANGYGKRTPIDDYPRKGKGGQGNIAINTGERNGDLVAA 833



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 53/133 (39%), Gaps = 7/133 (5%)

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIA 633
            +GN +   G G      + L  N  IV+  V   +   ++L  ++ G        +   
Sbjct: 751 KSGNGVRPSGRGSGGLRGMRLPENGRIVSLLVAQKNCGLQVLTATANGYGKRTPIDDYPR 810

Query: 634 NTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
             + G+  + +++ E+   +     V+  D + ++     L+   ++Q+ E  R   GV+
Sbjct: 811 KGKGGQGNIAINTGERNGDLVAATLVSPNDDLMLITSGGVLIRTKVEQVRETGRTAAGVK 870

Query: 689 LQSYKDGGISDVI 701
           L +  +G     I
Sbjct: 871 LINLDEGTTLVSI 883



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 29/110 (26%), Gaps = 8/110 (7%)

Query: 642 LKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDG 695
           +++    ++  ++    +    V     N       ID  P   +G +G    +   ++G
Sbjct: 769 MRLPENGRIVSLLVAQKNCGLQVLTATANGYGKRTPIDDYPRKGKGGQGNIAINTGERNG 828

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +         + L  I S                  R   G  +     
Sbjct: 829 DLVAATLVSPNDDLMLITSG--GVLIRTKVEQVRETGRTAAGVKLINLDE 876


>gi|307331913|ref|ZP_07611009.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113]
 gi|306882431|gb|EFN13521.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113]
          Length = 874

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 240/784 (30%), Positives = 389/784 (49%), Gaps = 35/784 (4%)

Query: 1   MGVDNISNSNTLVEE---------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  +N  N+   +            V+ V L   ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADENTPNTPDELTSDELAEGAALRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL
Sbjct: 61  PVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           +   GNFG+   D AAA RYTE +M  +A  +L+ +DE+ VDF+D Y+  + EP V P++
Sbjct: 121 VDSNGNFGSPGNDPAAAMRYTECKMDPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPAR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFP 227
            PNLL NG++GIAVGMAT+IP HN++E+ E A   + NP+ + E+    L++ I GPDFP
Sbjct: 181 IPNLLVNGSAGIAVGMATNIPPHNLREVAEGAQWFLANPQATQEELLEALIDRIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           TG  +V  R+ I E+YR GRG   +RA   VEE+ +G  C+VVTE+PYQV    L +KIA
Sbjct: 241 TGA-LVVGRKGIEEAYRTGRGSITMRAVVEVEEI-QGRQCLVVTELPYQVNPDNLAQKIA 298

Query: 288 ELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+   ++  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L
Sbjct: 299 DLVKDGKVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLAL 358

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+
Sbjct: 359 VD-GVPRTLSLDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIAL 417

Query: 407 IRNEDKPKPVMVSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR  D              + E Q +AIL ++LR L  LE  +I  E D L ++ ++ ++
Sbjct: 418 IRRSDTVDTARGGLMGLLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQSKIDEYNA 477

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S ++Q   I+ E+  + E F                     A     +       V 
Sbjct: 478 ILASPERQRQIISEELTAIVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVTITRGGYVK 537

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS- 582
            +     RS K     +     K+ D +     + T   +L  +  G+ Y   A  L   
Sbjct: 538 RTKTEDYRSQKRGGKGVRGTKLKQDDIVSHFFVSTTHHWLLFFTNKGRVYRAKAYELPDA 597

Query: 583 -GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                G+ +  L+    ++ I        Y++   L++ +  G        +  +    G
Sbjct: 598 GREARGQHVANLLAFQPDEKIARILAIRDYEAVPYLVLATKSGLVKKTPLKDYDSPRSGG 657

Query: 639 KTFLKVSS-----EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRL 689
              + +       E+++     V+  D + ++    + + F+     +  M R   GV+ 
Sbjct: 658 VIAINLREMADGREDELIGAELVSSADDLLLISRKAQSIRFTATDESLRPMGRATSGVKG 717

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
            S+++      +   +  G     +    Y +  N     +  RGG+G    K     G 
Sbjct: 718 MSFREDDELLSMNV-VRPGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIVEDRGS 776

Query: 750 FLSS 753
            + +
Sbjct: 777 LVGA 780


>gi|29840267|ref|NP_829373.1| DNA gyrase subunit A [Chlamydophila caviae GPIC]
 gi|29834615|gb|AAP05251.1| DNA gyrase, subunit A [Chlamydophila caviae GPIC]
          Length = 830

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 251/762 (32%), Positives = 385/762 (50%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ NP  SIE++LE + GPDFPTGGII    E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLVLSNPNASIEEILEVMPGPDFPTGGIICG-GEGIRSTYHTGRGKIKVR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IA+L+  K +  + D+RDES +D   V
Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR EV+
Sbjct: 304 VLELKKGESSEIVINRLYKFTDIQVTFGANMLALDK-NLPRTMNIHRMISAWIRHRTEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IRN D  +         F  TE Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCLDEVVRTIRNSDSKEHAKHQLVENFGFTEQQSV 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +I+ E D LL +      +L       + I  E+++++ +    
Sbjct: 423 AILELRLYQLTGLEAEKIQKEYDELLNKIAYYKRVLADEGLVKDIIRNELQDIQRVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRT       AD     + +I  EP+ + IS   +++ +                
Sbjct: 483 -----RRTRIE--FDADDIRDIEDIITNEPVIITISGDDYVKRMPIKVFREQKRGGHGVS 535

Query: 550 SLKIA---------LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--- 597
              +            A T D +L+ +  G+ Y L    L  G    +   ++  L    
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +++   L + +  G    V         +KG   L++   +++    
Sbjct: 596 PGEQLAAVLNVKNFENAGFLFLATKHGVVKKVALEAFSNPRKKGIRALEIDDGDELIAAA 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +T +   V +       + F  D++  M R  +GVR  S K+     V C  + +  + 
Sbjct: 656 HITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNENDRVVACQIVKDDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RGGVG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSQVGDFRETNRGGVGVRSILINERNGDVLGA 757



 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 57/166 (34%), Gaps = 6/166 (3%)

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 ++++L +  G A   P   +         ++ +   N N  +V   +      +
Sbjct: 656 HITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNENDRVVACQIVKDDQSV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           LVV   G     +  +     R G       +   + + +  +     D + ++    + 
Sbjct: 716 LVVCDNGFGKRSQVGDFRETNRGGVGVRSILINERNGDVLGAISVTDNDSILLMSAQGQA 775

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC-FKICEGLTWIDS 714
           +  ++  +  M R  +GVRL   KDG I   +    + E  T  D 
Sbjct: 776 IRINMQDVRVMGRSTQGVRLVHVKDGDILVAMEKLSLNEDETLADI 821


>gi|212551088|ref|YP_002309405.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549326|dbj|BAG83994.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 821

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 230/765 (30%), Positives = 387/765 (50%), Gaps = 24/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++N   ++ +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+  M+E+G
Sbjct: 1   MVDNN---QDRIIQVDIEEQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KKSAR VG+V+GK HPHGD SVY +LVR+AQ ++ RYPL+ GQGNFG+IDGD+
Sbjct: 58  NHSDQPYKKSARTVGDVLGKYHPHGDSSVYFALVRMAQNWLLRYPLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+  +AE +L+ +D++ VDF   +++   EP V P++ P LL NG+SGIAV
Sbjct: 118 PAAMRYTEARLGNLAEEMLRDIDKNTVDFNFNFDDTLREPSVLPTRVPTLLMNGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           GMAT++P HN+ E     +A ID+  EI I+ L++YI  PDFPTG  I    + I E + 
Sbjct: 178 GMATNMPPHNLTECINGIIAYIDSKGEIDIDGLMQYIKAPDFPTGATIY-GFQGIREVFE 236

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           +G+G   +R +  + E+      IV+ EIPY V K  LIE IA L+  K++  +  I DE
Sbjct: 237 VGKGRILLRGKVEI-EIHNNKEKIVIREIPYLVNKKELIEHIAVLVSEKKLEGVHHINDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    +  +  +L+  ++ L+ +E+ F +N   L     P+ + L  ++  +
Sbjct: 296 SDREGMRIVVDVKKDFNSGVLLNKLYKLTALESSFNVNNIALV-NGRPRTLNLKELICYF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421
           + HR EV+ RR+ + +  ++RRV I+ GL+IA  +IDEI+AII +   P   +     RF
Sbjct: 355 VEHRVEVVVRRTQYDLNRVERRVHIVDGLIIASNHIDEIVAIIHSSQNPNEAIDRLSGRF 414

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q  AI+ +RLR L  LE+ ++++E   L         +L++       I  E+ E
Sbjct: 415 DLTEIQSRAIVEMRLRQLTGLEQDKLRTEFGELKKMILCWKEILSNRNILMKIIKDELIE 474

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V++ F          +T    S    A  +  +       +  +     R+     V   
Sbjct: 475 VRDRFGDVRKTDIVYSTDDSNSDDFYADDEMIITISHLGYIKRTPLVDFRAQNRGGVGTK 534

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
           +   ++ D ++    A+    +L  +  G+ Y L    + +G    +  AIQ L++++ N
Sbjct: 535 SSEIRDKDFVEYIYAANMHAMMLFFTRKGRCYWLKVYQIPAGAKTSKGRAIQNLLNIDTN 594

Query: 600 QDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             +             +  +  L+  + +G       +      + G   + V   +++ 
Sbjct: 595 DKVSAFIRVKYLSDKDFVESHYLVFCTKRGIIKKTLLNAYSRPRQNGVKAITVHDGDEVI 654

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICE 707
            V    G + + V     + L F+ +++  M R   GV   +    D  I  +I     +
Sbjct: 655 AVKMTNGNNEIIVANRKGRALRFNENKVRSMGRLAAGVISMTLDLVDDEIIGMIIINDKK 714

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G        ++G  +S
Sbjct: 715 RENVLVVSEQGYGKRSRVGDYRIVNRGGKGIKTLNITEKTGFLVS 759



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/366 (12%), Positives = 110/366 (30%), Gaps = 24/366 (6%)

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           +E+L  R+       D  +E+                   N D          +++    
Sbjct: 455 KEILSNRNILMKIIKDELIEVRDRFGDVRKTDIVYSTDDSNSDDFYADDEMIITISHLGY 514

Query: 429 DA---ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                +++ R ++   +     +    + +      +                ++  +  
Sbjct: 515 IKRTPLVDFRAQNRGGVGTKSSEIRDKDFVEYIYAANMHAMMLFFTRKGRCYWLKVYQIP 574

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
               T  GR       +   DK +    +        V S+     + +           
Sbjct: 575 AGAKTSKGRAIQNLLNIDTNDKVSAFIRVKYLSDKDFVESHYLVFCTKRGIIKKTLLNAY 634

Query: 539 ------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
                  + A+   +GD +      +  + I++ +  G+A       + S       +  
Sbjct: 635 SRPRQNGVKAITVHDGDEVIAVKMTNGNNEIIVANRKGRALRFNENKVRSMGRLAAGVIS 694

Query: 593 LIDLNHNQDIVTAFVYDSTC--KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
           +     + +I+   + +      +LVVS +G        +     R GK    ++  EK 
Sbjct: 695 MTLDLVDDEIIGMIIINDKKRENVLVVSEQGYGKRSRVGDYRIVNRGGKGIKTLNITEKT 754

Query: 650 --MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD-GGISDVICFK 704
             +  +  VT  + V ++ ++   +   +  +  + R  +GVRL + +  G     +C  
Sbjct: 755 GFLVSIKNVTEHNDVMIINKSGIAIRIKVSDLNVIGRATQGVRLINLEKRGDEIASVCKV 814

Query: 705 ICEGLT 710
           + E   
Sbjct: 815 MSETDL 820


>gi|39649518|emb|CAE28040.1| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009]
          Length = 887

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 267/832 (32%), Positives = 397/832 (47%), Gaps = 114/832 (13%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD RDG KPVHRRI++ M E G ++   ++KSAR VG+VIGK
Sbjct: 1   MKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKQYRKSARTVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE+R+T++A+ +L 
Sbjct: 61  YHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESRLTKIAQTLLD 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF+  Y+  + EP V P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +A +A
Sbjct: 121 DIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACIA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+P +SI+ L + + GPDFPTGGII+  R  I  +Y+ GRG   +R +  +E V +  
Sbjct: 181 LIDDPALSIDDLNKIVPGPDFPTGGIIL-GRAGIRAAYQTGRGSIVMRGKVEIETVRKDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V+EIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+    R   P+++
Sbjct: 240 EAIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLRDESDRDGFRVVIELRRDAVPEVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L  G  PQ+M L  +L  ++A R +V+ RR+ F +     
Sbjct: 300 LNQLYKFTPLQTNFGANMVAL-EGGRPQLMNLKDLLTVFVAFREQVVTRRTKFLLNKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKP-----------------------------V 416
           R  IL GL IA  NIDEII +IRN   P                                
Sbjct: 359 RAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMITLIDDPRHKLN 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 L+  Q  AIL+LRL+ L  L   +I  ELD L  E      +L S  +    + 
Sbjct: 419 PDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILRSRARVQAIVK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ EVK  F+       RRT   E          + +I++E + V +S+ G+++     
Sbjct: 479 TELGEVKAEFATP-----RRTVIAEQEGE---VEDEDLIQREDMVVTVSHAGYVKRVPLS 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
                +      S +  +E D +     A T   +L  S+ G+ Y      L      G 
Sbjct: 531 TYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPLAPPNGR 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKT 640
           G+A+  ++ L   + I T               ++  ++ GN    + S+ +   R G  
Sbjct: 591 GKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVRRNKLSDFVDVRRSGII 650

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGGI 697
            +K+   E +  V   T  D V +     + + F +  +     R   GVR  +   G  
Sbjct: 651 AMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMGVRGIALSSGDT 710

Query: 698 SDVICF--------------------------------------KICEGLT--------- 710
              +                                        +  EG T         
Sbjct: 711 VISLSILRHFEATPAERSTYLKQSGAIRRAATGEENEPVETPEAEAEEGDTSAALSQERY 770

Query: 711 ---------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +  +   Y +  +        RGG G +      R+GK ++S
Sbjct: 771 AEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRNGKLVAS 822



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSS-EEKMKLVVKVTG-DHVAVVG 665
           S   +L +S  G        E     R GK    + V+S   K+     V   D + +V 
Sbjct: 776 SEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRNGKLVASFPVEDSDQIMLVT 835

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +N +L+   ++ I    R  +GV + +  D      +
Sbjct: 836 DNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSV 872



 Score = 42.8 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 5/110 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L +S +G      +    +    G+ I  +   + N  +V +F  + + ++++V+  
Sbjct: 778 QFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRNGKLVASFPVEDSDQIMLVTDN 837

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           G         I    R   G      + +EK+  V ++        GEN 
Sbjct: 838 GQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVERIPETDD---GENG 884


>gi|126656709|ref|ZP_01727923.1| DNA gyrase subunit A [Cyanothece sp. CCY0110]
 gi|126621929|gb|EAZ92637.1| DNA gyrase subunit A [Cyanothece sp. CCY0110]
          Length = 862

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 241/796 (30%), Positives = 387/796 (48%), Gaps = 64/796 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T+ ++ +    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +    +L+ ++ D VDF D ++    EP+V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI NPE+S ++L++ I GPDFPTGG I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELIDGTIALIHNPELSEKELIKIIPGPDFPTGGQIL-GRSGIHDAYMTGRGS 240

Query: 250 FRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I++T++PYQ  K+ LIE+IA+L+  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +I+  + ++  F  NM  L     PQ++ +   L  +L
Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALV-NGEPQLLTIKEFLSVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  N+D +I +IR        K  +V  F 
Sbjct: 360 DFRIETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQEFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q DAIL ++LR L  LE  +I +E + L  +   +  +L   ++    I  E+ ++
Sbjct: 420 LSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLQDILARRERIEAIIEEELTQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K I +       RRT        D   +   +I  E   ++++ +G+I+ +   +     
Sbjct: 480 KTIHATP-----RRTEIV---HDDGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFEAQQ 531

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +A   K+ D ++  L     D++L  S  G  Y + A  +   S    G  I  
Sbjct: 532 RATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIPSSSRTARGIPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +  ++ I +      +     L++++ KG       S        G   + +   ++
Sbjct: 592 MLPIPKDEKITSIVAVSEFTEDVFLVMLTHKGYIKKTALSAFSNIRTNGLIAISLGEGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           ++ V      D + +       + F  D  Q+  + R  +GV+    K G     +    
Sbjct: 652 LRWVRLTREEDSIILGTRKGMAIHFHADNQQLRPLGRATRGVKAMKLKKGDELISMDVLP 711

Query: 706 CE-----------------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
            +                             G   +      Y +        L +R G+
Sbjct: 712 AQVTAGIADAAEDEDVLDNETEELSEEETTAGPWILAITNGGYGKRVPISQFRLQRRAGM 771

Query: 737 GSLVPKGFPRSGKFLS 752
           G    K   ++    S
Sbjct: 772 GVRAIKFKSKTDCLAS 787



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLVVKVT-GDHVAVVGENRK 669
           +L +++ G    V  S+     R G     +K  S+ + +  +  V   D + +V     
Sbjct: 746 ILAITNGGYGKRVPISQFRLQRRAGMGVRAIKFKSKTDCLASLHVVNAEDELMIVSNRGI 805

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
           ++  ++D I   SR   GVR+Q          +  
Sbjct: 806 IIRQAVDAISMQSRAATGVRVQRLDSDDAIAAVAL 840


>gi|313112496|ref|ZP_07798167.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310625184|gb|EFQ08468.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 864

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 227/756 (30%), Positives = 378/756 (50%), Gaps = 21/756 (2%)

Query: 3   VDNISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
            + +     ++     + +    ++  +E  +L Y++S I  RA+PD+RDG KPVHRRI+
Sbjct: 2   EETMEEDYVMIPGSGTKKIIR-DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           + M E G D    ++KSA  VG V+G  HPHGD SVYD++VRLAQ F  RYPL+ GQGNF
Sbjct: 61  YTMHERGNDPSHPYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGD  AAYRYTEARM+++A  +L  +++D +D+   ++E   EP V P +FPNLL N
Sbjct: 121 GSVDGDPPAAYRYTEARMSRMAVEMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+ GIAVGMAT+IP HN+ E+ +  +A ID+P+I +  L+EYI GPDFPT G I+  R  
Sbjct: 181 GSQGIAVGMATNIPPHNLSEVIDGCIAYIDDPDIDLPGLMEYIKGPDFPTAG-IIMGRSG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I  +Y  GRG   +R R  +EE   G   I++TEIPY V K+RLIE +A+L+  KRI  +
Sbjct: 240 IRAAYATGRGKITLRGRATIEETKNGRTQIIITEIPYMVNKARLIENMADLVKEKRIEGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
             + DE+      ++    +  +  +++  ++  + ++    + M  +   +VP+V+ L 
Sbjct: 300 TGLNDETNRKGMRIVVDIRKDANAQVILNQLYQYTQLQDTVGVIMLAIDH-KVPKVLTLK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED----KPK 414
            +L++++  + EV+ RR+ + ++    R  IL+GL  A   +DE+IA IR       + K
Sbjct: 359 QMLQKYVEFQDEVVRRRTQYDLKKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAK 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++ +F   + Q DAI+ L+L  L  LE  +I+ EL +L A+ E  +++L    +    
Sbjct: 419 AAIMEQFGFDDPQADAIVKLQLGRLAGLEILKIEEELASLQAKIENWEAILADDARVLAI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           +  E+ E+K+ F        +  T         A  Q      E   +    +   ++ +
Sbjct: 479 VKEELLEMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQR 538

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--L 592
                +S +  KE D ++      T D +L ++  G+ + +    +  G    +      
Sbjct: 539 RGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTSKGSNIVN 598

Query: 593 LIDLNHNQDIVTAFVYD-----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           L+ L   + +                + +V+ +G        +     + G   + ++  
Sbjct: 599 LLQLAEGEKVTNMICQSKEADTEGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEG 658

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           + +      +G D + V   N + + F+      M R G GVR     +G     +C   
Sbjct: 659 DALAWTRLTSGHDMLIVATRNGQAIRFNEADARPMGRSGHGVRAIRLAEGDEVVGVCIC- 717

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
            EG T +        R  +     +  RGG G    
Sbjct: 718 REGGTVLTVTENGKGRRSDIDTYRITARGGKGIRNY 753



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 4/174 (2%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L  +   EGD+L         D +++ + +G+A      +       G      I L  
Sbjct: 649 GLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEADARPMGRSG-HGVRAIRLAE 707

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVT 657
             ++V   +      +L V+  G     +        R GK       +++K+  V  V 
Sbjct: 708 GDEVVGVCICREGGTVLTVTENGKGRRSDIDTYRITARGGKGIRNYDAAKDKVAAVKIVD 767

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
                ++      ++    ++IP  SR G GVR+    +     V+     +  
Sbjct: 768 DVDDVLLSSQEGIIIRLHANEIPLQSRYGSGVRVMRLGENDKVMVLARTDHDDE 821


>gi|254526250|ref|ZP_05138302.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202]
 gi|221537674|gb|EEE40127.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202]
          Length = 865

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 237/795 (29%), Positives = 386/795 (48%), Gaps = 46/795 (5%)

Query: 1   MGVDNISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M     S+++ L E+N  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI+
Sbjct: 1   MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM E+GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           G++D D  AA RYTE+R+  + +  +L+ ++ + VDF D ++    EP V P++ P LL 
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLL 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG+SGIAVGMAT+IP HN+ E+     ++I NP I   +L E I GPDFPTGG I+  R+
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQIL-GRD 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
            I E+++ G+G   +R    +E++          +++TE+P+Q  K+ LIE+IA+L+  K
Sbjct: 240 GIRETFKTGKGSITMRGVANIEQIKSTGRAEKDAVIITELPFQTNKAALIERIADLVNEK 299

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           ++  + DIRDES  D   ++    R   P +++ ++F L+ ++  F  N+  L     P 
Sbjct: 300 KLEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALV-EGEPT 358

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNE 410
            + L  +L  +L  R E + RR++F ++  + R  I+KGLL+A   +DEI   I   ++ 
Sbjct: 359 TLSLRKMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDS 418

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              +  + +   L+  Q DAIL ++LR L  LE  +IK E + L  +      +LNS ++
Sbjct: 419 ISAREKLQNEHKLSSIQSDAILQMQLRRLTALEADKIKEEHNELTRKINFYQQILNSKER 478

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            +  I  E+ ++   FS                    A  +  ++  E   +        
Sbjct: 479 IFEIILEELNQIDGKFSSPRKTEILDLGGGLDDIDLIANDRSVVLLTEAGYLKRMPVNDF 538

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
            S    S   +    KE D +K+ +  +  D +LL S  G AY LPA  +       +  
Sbjct: 539 ESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTAKGT 598

Query: 589 AIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
               L+ +   + I +    D       LL+++  G       S        G   + + 
Sbjct: 599 PSVQLLPIPREEKITSLVAVDSFVDDRYLLMLTKAGFIKRTALSAFSKIRSNGLIAINLE 658

Query: 646 SEEKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYKDG------ 695
             + +  V     GD V +  +    + F   I+++  + R  +GV+  + ++G      
Sbjct: 659 DGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDINELRPLGRTARGVKSMNLREGDNLVSM 718

Query: 696 -------------------GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
                               + D +     +G   + ++     +        L KR G+
Sbjct: 719 DVLTSNLVDQLAKIEDLTEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGM 778

Query: 737 GSLVPKGFPRSGKFL 751
           G    K   +  + +
Sbjct: 779 GLRAIKFRIKDDQLV 793



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 5/112 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSEEKMKLVVKV--TGDHVAVVG 665
               +L+ S+ G    V  ++     R G     +K   ++   + +KV   G+ + +V 
Sbjct: 749 DGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDDQLVCLKVLGEGEELLLVT 808

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           E   ++  + D+I + SR   GV+LQ   DG     +     E +   D  G
Sbjct: 809 EKGVIVRTNADKISQQSRAATGVKLQRLDDGDHLSEVVLVPREQIEEKDQNG 860


>gi|126696507|ref|YP_001091393.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9301]
 gi|126543550|gb|ABO17792.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
          Length = 865

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 240/796 (30%), Positives = 390/796 (48%), Gaps = 46/796 (5%)

Query: 1   MGVDNISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M     S+++ L E+N  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI+
Sbjct: 1   MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM E+GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           G++D D  AA RYTE+R+  + +  +L+ ++ + VDF D ++    EP V P++ P LL 
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLL 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG+SGIAVGMAT+IP HN+ E+     ++I+NP I   +L E I GPDFPTGG I+  R+
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIINNPSIEDRELFEIIKGPDFPTGGQIL-GRD 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
            I E+++ GRG   +R    +E++          +++TE+P+Q  K+ LIE+IA+L+  K
Sbjct: 240 GIRETFKTGRGSITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEK 299

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           ++  + DIRDES  D   ++    R   P +++ ++F L+ ++  F  N+  L     P 
Sbjct: 300 KLEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVK-GEPT 358

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNE 410
            + L  +L  +L  R E + RR++F ++  + R  I+KGLL+A   +DEI   I   ++ 
Sbjct: 359 TLSLRKMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDS 418

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              +  + +   L+  Q DAIL ++LR L  LE  +IK E ++L  +      +LNS ++
Sbjct: 419 ISAREKLQNDHKLSSIQADAILQMQLRRLTALEADKIKGEHNDLTQKINLYQQILNSKER 478

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            +  I  E+ ++ E FS                    A  +  ++  E   +        
Sbjct: 479 IFEIILEELNKIDERFSSPRKTEILDLGGGLDDIDLIANERSVVLLTEAGYLKRMPVNDF 538

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
            S    S   +    KE D +K+ +  +  D +LL S  G AY LPA  +       +  
Sbjct: 539 ESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDKGVAYALPAYRVPMSSRTAKGT 598

Query: 589 AIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
               L+ +   + I +    D       LL+++  G       S        G   + + 
Sbjct: 599 PSVQLLPIPREEKITSIVAVDSFVDDSYLLMLTKAGFIKRTALSAFSKIRSNGLIAINLE 658

Query: 646 SEEKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYKDG------ 695
             + +  V     GD V +  +    + F   I+++  + R  +GV+  + ++G      
Sbjct: 659 DGDALTWVRLSKEGDSVLIGSKTGMAIHFRLDINELRPLGRTARGVKSMNLREGDNLVSM 718

Query: 696 -------------------GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
                               + D +     +G   + ++     +        L KR G+
Sbjct: 719 DVLTSNLADQLAKIEYPKEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGM 778

Query: 737 GSLVPKGFPRSGKFLS 752
           G    K   +  + +S
Sbjct: 779 GLRAIKFRIKYDQLVS 794



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLVVKV-TGDHVAVVG 665
               +L+ S+ G    V  ++     R G     +K   + +++  +  +  G+ + +V 
Sbjct: 749 DGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKYDQLVSLKVLGEGEELLLVT 808

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           E   ++  + DQI + SR   GV+LQ   DG     +     E + 
Sbjct: 809 EKGVIVRTNADQISQQSRAATGVKLQRLDDGDHLSEVVLVPREQIE 854


>gi|157828149|ref|YP_001494391.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932848|ref|YP_001649637.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa]
 gi|157800630|gb|ABV75883.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907935|gb|ABY72231.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa]
          Length = 905

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 239/833 (28%), Positives = 388/833 (46%), Gaps = 91/833 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ ++    N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G
Sbjct: 1   MTDKSS---SNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 ++KSARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PL+ GQGNFG++DGD+
Sbjct: 58  NHANKPYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+RM +VA  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAV
Sbjct: 118 AAAMRYTESRMAKVAYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  
Sbjct: 178 GMATNIPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +G     I++TEIPY V K+RL+EKIA+++  KRI  + D+RDES
Sbjct: 237 GRGSIIIRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAQMVKEKRIEGISDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  ++
Sbjct: 297 NKNGVRIFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           + R  V+  R+ + +     R  IL GL IA  NIDEII II+  + P            
Sbjct: 356 SFREVVVTNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQW 415

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 + + TE Q  AIL +RL+ L  +E+ +++ +L NL  E
Sbjct: 416 EALNILPLVKLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTE 475

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +  ++L S  +    +  E+ +VKE F+           F +         +  +   
Sbjct: 476 ITEYLNILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVT 535

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               +        R+ K      S L  ++ D         T   +L  S  G+ Y+L  
Sbjct: 536 LGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKL 595

Query: 578 GNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
             L      G+   +  ++ L  N+ I                 ++  ++KGN    +  
Sbjct: 596 YKLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLL 655

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
           +       GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   G
Sbjct: 656 DFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDG 715

Query: 687 VRLQSY-KDGGISDVICFK----------------------------------------- 704
           VR     K+  +  +   K                                         
Sbjct: 716 VRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEEFNPEELGVSLTAP 775

Query: 705 -----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 AIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           + +S   +L V+  G              R G   + +   +K   +  V+ V   D + 
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  + KL+   ++ I    R   GV L    DG     +     
Sbjct: 840 LITNSGKLIRCKLESIRITGRNTSGVILFKLDDGEKVVSVSLIAE 884



 Score = 57.9 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 63/227 (27%), Gaps = 57/227 (25%)

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI-- 631
            +   +LL  +      ++ I L+ +  ++          +L+ +  G A       +  
Sbjct: 648 NIRRSDLLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRV 707

Query: 632 -IANTRKGKTFLKVSSEEKMKLVVKVTG-------------------------------- 658
             + T  G   +K++ E+ +  +  + G                                
Sbjct: 708 IKSRTSDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEEFNPEE 767

Query: 659 -----------------DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD--GGIS 698
                            + +  V EN      S        RG  G+      D  G + 
Sbjct: 768 LGVSLTAPAIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVV 827

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            V+  K+ + L  I ++G+            +  R   G ++ K   
Sbjct: 828 GVMPVKMDDELMLITNSGK--LIRCKLESIRITGRNTSGVILFKLDD 872



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A++ + IL ++ +G      A         G  I  +   +    +V         +L+
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 616 VVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVTG 658
           ++++ G     +   I        G    K+   EK+  V  +  
Sbjct: 840 LITNSGKLIRCKLESIRITGRNTSGVILFKLDDGEKVVSVSLIAE 884


>gi|332878574|ref|ZP_08446294.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683475|gb|EGJ56352.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 837

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 236/770 (30%), Positives = 403/770 (52%), Gaps = 43/770 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M +MG+    A+KK
Sbjct: 5   EKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSSRAYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+GK HPHGD +VYD++VR+AQ +  RY L+ GQGNFG++ GDS AA RYTEA
Sbjct: 65  SAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM + +E +L  +D++ VD + TY++   EP V P++ PNLL NG++GIAVGMAT++  H
Sbjct: 125 RMRKFSEDMLSDIDKETVDHQLTYDDSREEPTVLPTRIPNLLVNGSAGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L++YI  PDFPTGG I+   E + E+++ GRG   VRA
Sbjct: 185 NLSEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGG-IIYGYEGVKEAFKTGRGRVIVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   +EV  G  CIVVTE+PYQV  S L++K ++L+   ++  + D+RDESA     +++
Sbjct: 244 KTEFQEVK-GKECIVVTEVPYQVDTSVLLKKTSDLVKEGKLEGITDVRDESARGKIRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  ++++T F +N   L     P+++ L  ++  ++ HR EV++R
Sbjct: 303 FLKRDAVPNVVLNNLFKHTELQTSFSVNNIALVK-GRPELLNLKDLIYHFVEHRHEVVYR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++    R+ IL+G +        + + I IIR  DKPK  +++ F LT+ Q +AI
Sbjct: 362 RTDFELRKAKERIHILEGFMKVMATEDTMGKAIEIIRFHDKPKEDLIAEFDLTDVQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L LR + K    Q K E +  LAE   ++ +L   +++   I  E+ E+KE +     
Sbjct: 422 LALALRRINKALILQTKEEYEQKLAEIRDLEDILARKERRVEIIKQELLEIKEKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSAL 543
              RR+       A      + MI  + + + IS+ G+I+              V   A 
Sbjct: 480 ---RRSVI---EYAGGEFSVEDMIPDDKMVITISHAGYIKRTPLSEYKTQSRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             ++ D L+    +     +L  +  GK + +    +  G    +  A+Q LI++  +  
Sbjct: 534 TTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEGSKTAKGRAVQNLINIEQDDK 593

Query: 602 IVTAFVY----DST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I          D        L++ + +G        E     + G   + +   +++   
Sbjct: 594 IKAFVSVQNLKDEDYISSNYLIMATKQGIVKKTLLKEYSRPRQNGINAITIKEGDELIEA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGL 709
              +G   + +  ++ + + F  D++  + R  +GVR          +  +I  +     
Sbjct: 654 KLTSGSSQLMLAVKSGRAIRFGEDKVRAVGRNSQGVRGIDLDTETDEVVGMIAIENPLEE 713

Query: 710 TWIDSAGRSYNRSENDLL-------GWLGKRGGVGSLVPKGFPRSGKFLS 752
           T +  +   Y +               +  RGG G        ++G+ ++
Sbjct: 714 TVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITDKTGQLVA 763



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 61/493 (12%), Positives = 150/493 (30%), Gaps = 30/493 (6%)

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
               V+ R  +  +    +  V        +++    + A+  I      ++ +  E   
Sbjct: 331 NIALVKGRPELLNLKDLIYHFVEHRHEVVYRRTDFELRKAKERIHILEGFMKVMATEDTM 390

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
              I +   +     DL+ E        E    L +  ++   + Q           +  
Sbjct: 391 GKAIEIIRFHDKPKEDLIAEFDLTDVQAEAILALALRRINKALILQTKEEYEQKLAEIRD 450

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             ++L R+           +EI +       ++ E      + +   P      +++   
Sbjct: 451 LEDILARKERRVEIIKQELLEIKEKYGDERRSVIEYAGGEFSVEDMIPDDKMVITISHAG 510

Query: 428 VDA---ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
                 +   + +S   + +    +   + L       +               +R  + 
Sbjct: 511 YIKRTPLSEYKTQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEI 570

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------ 538
                T  GR       + + DK     ++   +    + SN   + + +          
Sbjct: 571 PEGSKTAKGRAVQNLINIEQDDKIKAFVSVQNLKDEDYISSNYLIMATKQGIVKKTLLKE 630

Query: 539 -------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   ++A+  KEGD L  A     + +++L    G+A       + +   + + ++
Sbjct: 631 YSRPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFGEDKVRAVGRNSQGVR 690

Query: 592 LLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESE-------IIANTRKGKTFL 642
            +       ++V     ++     +LVVS  G        +            R GK   
Sbjct: 691 GIDLDTETDEVVGMIAIENPLEETVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVK 750

Query: 643 KVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
            +S  +K   +  +  V  G+ + ++ ++   +  SID +    R  +GV+L + K    
Sbjct: 751 TISITDKTGQLVAIKSVAEGEDLMIINKSGIAIRLSIDTLRISGRATQGVKLINIKGKDS 810

Query: 698 SDVICFKICEGLT 710
              +   + E   
Sbjct: 811 IAAVTKVMKEDDD 823


>gi|217978381|ref|YP_002362528.1| DNA gyrase, A subunit [Methylocella silvestris BL2]
 gi|217503757|gb|ACK51166.1| DNA gyrase, A subunit [Methylocella silvestris BL2]
          Length = 927

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 249/859 (28%), Positives = 402/859 (46%), Gaps = 117/859 (13%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  ++ +       + ++ VS+   +   YL YA+S I  RA+PD+RDG KPVHRRI+ +
Sbjct: 1   MADNDDTGPGAPGSD-IRPVSISDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFS 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E        + K ARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG+
Sbjct: 60  MHEQNHTPDRPYVKCARIVGDVMGKYHPHGDSAIYDALVRMAQGFSMRLPLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTE+R+ + A  +L+ +D D VDF+D Y+ ++ EPVV P++FPNLL NG 
Sbjct: 120 VDGDPPAAMRYTESRLARPAMALLEDIDSDTVDFQDNYDGKEREPVVLPARFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A +ALIDNPE++IE+L+ Y+ GPDFPTGG I+  R  I 
Sbjct: 180 GGIAVGMATNIPPHNLGEVIDAVIALIDNPELTIEELMAYVPGPDFPTGGAIL-GRTGIQ 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG    RA+  VE + +    ++VTEIPYQ+ KS L+EKIA+L+  KR+  + D
Sbjct: 239 SAYLTGRGSVLTRAKVEVETLRKEREALIVTEIPYQINKSSLVEKIADLVREKRVEGISD 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   ++    R    ++++  ++  + +++ F  NM  L+ G  P+++ L   
Sbjct: 299 LRDESDRDGMRIVIELKRDAVAEVVLNQLWRYTALQSSFACNMIALN-GGRPEMLTLKDF 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII------------- 407
           L  ++  R EV+ RR+ + +        +  GL IA  NIDE+I +I             
Sbjct: 358 LTAFVDFREEVVTRRTKYLLGKARDAAHLQVGLAIAVANIDEVIRLIRSSADAAAAREAL 417

Query: 408 ----RNEDKPKP------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                      P                   L+E Q  AIL LRL+ L  L   +I   L
Sbjct: 418 MARSWPAHDMAPLVLLIADPRHILSENGECRLSEAQARAILELRLQRLTALGREEIAEAL 477

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + L  E      +L+S ++ ++ +  E+  VK   +       RRT   + +        
Sbjct: 478 NKLAVEIADYLEILHSRERLFSIVKEEMLAVKAAHATP-----RRTIILDSATG---VDD 529

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+++          +      SA+  ++ D +     A T   +
Sbjct: 530 EDLIQREDMVVTVSHHGYVKRVPLATYRAQRRGGKGRSAMQTRDEDFVARLFVASTHAPV 589

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LL 615
           L  S+ G+ Y      L   + +  G+A+  ++ L   + I T               ++
Sbjct: 590 LFFSSAGQVYKEKVWRLPLAAPQARGKALVNMLPLEQGERITTIMPLPEEEDAWATLDVM 649

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
             +++G     + S+     R GK  +++   E++  V     D  V +     + + F 
Sbjct: 650 FATTRGTVRRNKLSDFAQVNRAGKIAMRIDEGEEIVDVQICGEDADVLLTTAKGQCIRFP 709

Query: 675 IDQIPE-MSR-GKGV---------RLQSYK------------------------------ 693
           +  +     R   GV         R+ S                                
Sbjct: 710 VTDVRVFKGRDSMGVRGISLSEGDRVISLAILRHTEADSGERIAYLKMRRAVAGEASAEA 769

Query: 694 ----------DGGISDVICFKI---------CEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
                     + G  D     +          +    +  +   Y +  +     +  RG
Sbjct: 770 GAESPADAQGEDGAEDAGPQSLSPDRYARMSADEQIILTLSSNGYGKRTSSYEYRITGRG 829

Query: 735 GVGSLVPKGFPRSGKFLSS 753
           G G +     PR+G  ++S
Sbjct: 830 GKGIVAMVVNPRNGLLVAS 848



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSEEKMKLVV--KVTGDHVAVVG 665
               +L +SS G        E     R GK    + V+    + +       GD + +V 
Sbjct: 802 DEQIILTLSSNGYGKRTSSYEYRITGRGGKGIVAMVVNPRNGLLVASMPVEDGDEIMLVT 861

Query: 666 ENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFK 704
              +L+   ++ I    RG +GV    +  G    V+  +
Sbjct: 862 NGGQLIRCPVEGIRVAGRGTQGV--IVFNTGADEQVVSVE 899



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 24/96 (25%), Gaps = 2/96 (2%)

Query: 650 MKLVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE 707
            +       + + + +  N      S  +     RG KG+            V    + +
Sbjct: 794 DRYARMSADEQIILTLSSNGYGKRTSSYEYRITGRGGKGIVAMVVNPRNGLLVASMPVED 853

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
           G   +                 +  RG  G +V   
Sbjct: 854 GDEIMLVTNGGQLIRCPVEGIRVAGRGTQGVIVFNT 889


>gi|160944259|ref|ZP_02091488.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444441|gb|EDP21445.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii
           M21/2]
          Length = 860

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 229/745 (30%), Positives = 378/745 (50%), Gaps = 18/745 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            ++  +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G D   A++KSA  VG
Sbjct: 19  DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVG 78

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V+G  HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  AAYRYTEARM+++A
Sbjct: 79  AVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMA 138

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  +++D +D+   ++E   EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ 
Sbjct: 139 VEMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVI 198

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +A ID+P+I +  L+E+I GPDFPT G I+  R  I  +Y  GRG   +R R  +EE
Sbjct: 199 DGCIAYIDDPDIDLPGLMEHIKGPDFPTAG-IIMGRSGIRAAYATGRGKITLRGRATIEE 257

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
              G   I++TEIPY V K+RLIE +A+L+  KRI  +  + DE+      ++    +  
Sbjct: 258 TKNGRTQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDA 317

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +  +++  ++  + ++    + M  +   +VP+V+ L  +L++++  + EV+ RR+ + +
Sbjct: 318 NAQVILNQLYQYTQLQDTVGVIMLAIDH-KVPKVLTLKQMLQKYVEFQDEVVRRRTQYDL 376

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED----KPKPVMVSRFSLTENQVDAILNLRL 436
           +    R  IL+GL  A   +DE+IA IR       + K  ++ +F   + Q DAI+ L+L
Sbjct: 377 KKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDDPQADAIVKLQL 436

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L  LE  +I+ EL +L A+ E  +++L    +    +  E+ E+K+ F        + 
Sbjct: 437 GRLAGLEILKIEEELASLHAKIEDWEAILADDARVLAIVKDELLEMKKRFGDERRTEIQS 496

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
            T         A  Q      E   +    +   ++ +     +S +  KE D ++    
Sbjct: 497 VTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQEMFV 556

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAFV-----YD 609
             T D +L ++  G+ + +    +  G    + +    L+ L   + +            
Sbjct: 557 GSTHDYVLFVTDRGRLFRIKGYTIAEGSRTSKGMNIVNLLQLAEGEKVTNMICQSKDAEQ 616

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENR 668
           S   + +V+ +G        +     + G   + ++  + +      +G D + V   N 
Sbjct: 617 SGGYVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNG 676

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           + + F+ +    M R G GVR     +G     +C    EG T +        R  +   
Sbjct: 677 QAIRFNEEDARPMGRNGHGVRAIRLAEGDEVVGVCIC-REGGTVLTVTENGKGRRSDIDT 735

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  RGG G           K  +
Sbjct: 736 YRITARGGKGIRNYDVS--RDKVAA 758



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 71/222 (31%), Gaps = 11/222 (4%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVI-SNRGWIRSLKSHSV------DLSALHFKEGDS 550
              E  +      Q    E+    V + + +G I+              L  +   EGD+
Sbjct: 597 QLAEGEKVTNMICQSKDAEQSGGYVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDA 656

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L         D +++ + +G+A      +      +G      I L    ++V   +   
Sbjct: 657 LAWTRLTSGHDMLIVATRNGQAIRFNEEDARPMGRNG-HGVRAIRLAEGDEVVGVCICRE 715

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTGDHVAVVGE-NR 668
              +L V+  G     +        R GK       S +K+  V  V      ++     
Sbjct: 716 GGTVLTVTENGKGRRSDIDTYRITARGGKGIRNYDVSRDKVAAVKIVDDVDDVLLSSQEG 775

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            ++    ++IP  SR G GVR+    +     V+     +  
Sbjct: 776 IIIRLHANEIPLQSRYGSGVRVMRLGENDKVMVLARTDHDDE 817


>gi|157413533|ref|YP_001484399.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9215]
 gi|157388108|gb|ABV50813.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
          Length = 865

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 238/795 (29%), Positives = 386/795 (48%), Gaps = 46/795 (5%)

Query: 1   MGVDNISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M     S+++ L E+N  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI+
Sbjct: 1   MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM E+GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           G++D D  AA RYTE+R+  + +  +L+ ++ + VDF D ++    EP V P++ P LL 
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLL 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG+SGIAVGMAT+IP HN+ E+     ++I NP I   +L E I GPDFPTGG I+  RE
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQIL-GRE 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
            I E+++ G+G   +R    +E++          +++TE+P+Q  K+ LIE+IA+L+  K
Sbjct: 240 GIRETFKTGKGSITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEK 299

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           ++  + DIRDES  D   ++    R   P +++ ++F L+ ++  F  N+  L     P 
Sbjct: 300 KLEGISDIRDESDRDGMRIVIELKRDSYPQVVLNNLFKLTPLQNNFSANILALVK-GEPT 358

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNE 410
            + L  +L  +L  R E + RR++F ++  + R  I+KGLL+A   +DEI   I   ++ 
Sbjct: 359 TLSLRKMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDS 418

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              +  + +   L+  Q DAIL ++LR L  LE  +IK E + L  +      +LNS ++
Sbjct: 419 ISAREKLQNEHKLSSIQSDAILQMQLRRLTALEADKIKEEHNELTRKINLYQQILNSKER 478

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            +  I  E+ ++   FS                    A  +  ++  E   +        
Sbjct: 479 IFEIILEELNQIDGKFSSPRKTEILDLGGGLDDIDLIANDRSVVLLTEAGYLKRMPVNDF 538

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
            S    S   +    KE D +K+ +  +  D +LL S  G AY LPA  +       +  
Sbjct: 539 ESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTAKGT 598

Query: 589 AIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
               L+ +   + I +    D       LL+++  G       S        G   + + 
Sbjct: 599 PSVQLLPIPREEKITSLVAVDSFVDDRYLLMLTKAGFIKRTALSAFSKIRSNGLIAINLE 658

Query: 646 SEEKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYKDG------ 695
             + +  V     GD V +  +    + F   I+++  + R  +GV+  + ++G      
Sbjct: 659 DGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDINELRPLGRTARGVKSMNLREGDNLVSM 718

Query: 696 -------------------GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
                               + D +     +G   + ++     +        L KR G+
Sbjct: 719 DVLTSNLVDQLAKIEDLTEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGM 778

Query: 737 GSLVPKGFPRSGKFL 751
           G    K   +  + +
Sbjct: 779 GLRAIKFRIKDDQLV 793



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSEEKMKLVVKV--TGDHVAVVG 665
               +L+ S+ G    V  ++     R G     +K   ++   + +KV   G+ + +V 
Sbjct: 749 DGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDDQLVCLKVLGEGEELLLVT 808

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           E   ++  + D+I + SR   GV+LQ   DG     +     E + 
Sbjct: 809 EKGVIVRTNADKISQQSRAATGVKLQRLDDGDHLSEVVLVPREQIE 854


>gi|222100459|ref|YP_002535027.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359]
 gi|221572849|gb|ACM23661.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359]
          Length = 803

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 238/750 (31%), Positives = 381/750 (50%), Gaps = 12/750 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +    +   L + YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  
Sbjct: 1   MPEILINRPIEDELVDSYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLTHNSPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD  VYD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++AE +L+ +D++ V+  D ++    EP V PSK PNL+ NG SGIAVGMATSIP
Sbjct: 121 EARLTRLAEEMLEDIDKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A + LID+PE S+E+L+++I GPDFPTGGI+V     +   Y  GRG   V
Sbjct: 181 PHNLSETVDALVYLIDHPEASVEELMQFIKGPDFPTGGIVVNG-SELKNVYEEGRGRIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  VEE  R    IV+TEIPY V K+ LIE+IA+L+       + +IRDES +    V
Sbjct: 240 RGKVHVEEGKR-LKRIVITEIPYGVSKAGLIEQIAKLVKDDDSLPVRNIRDESDKRGLRV 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  + D+++ +++  + ++  F + M V+   + P++M L G+L+ +L HR EV+
Sbjct: 299 VIEIPKDTNEDIIINNLYKRTALQDYFNVQMLVIDKNKRPRLMNLKGLLEAFLEHRFEVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ +  +   +R  +++GLL A   I  ++ I+RN       +  ++    ++E Q  
Sbjct: 359 RRRAEYEYEKFTKRAHVVEGLLKAARAIGVVVDIVRNSKDVESARNSLMETLEISEEQAK 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE   +++E  +L+ +  ++  +L   ++    +  E   +KE +   
Sbjct: 419 AILDMRLSRLTSLEIENLQNEYSDLVKKISEVKEILEKDEKVREIMKKEFLYLKERYGDP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                                   +       +  +     RS +     ++     E D
Sbjct: 479 RRTEITDEELRYDVEELIVEEDVVITLSHKGYLKSTPLNSYRSQRRGGKGITVSKLSEDD 538

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            ++  +    T   L ++  GKAY L             G+ I   ++L   + IV    
Sbjct: 539 EVEFVVVTKNTSSTLFITNFGKAYVLKNYQIETTGRNTRGKHISAFLNLEDTERIVALVP 598

Query: 608 YDSTCK-LLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH--VAV 663
            +   K L++V+  G        E    T   G   +++   +++      T +   + V
Sbjct: 599 LNGKGKDLVIVTKSGKIKRTSLEEFENATSNRGVRAIRIEPGDEIVSARVSTSEKETLVV 658

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
             +   ++ F +  +  M R   GV+    + G     +     E    +    + + + 
Sbjct: 659 ATKLGMIIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSMDVVPSEEGEILTVTEKGFGKR 718

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               L  + KRGG G        ++G  ++
Sbjct: 719 TPVQLYRVQKRGGTGLRNISDVNKTGHVVA 748



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 7/155 (4%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA-FVYDSTCKLL 615
               + +++ +  G     P  ++     +  A    I L    ++V+   V     ++L
Sbjct: 650 TSEKETLVVATKLGMIIRFPVSDVRRMGRNA-AGVQAIKLQPGDEVVSMDVVPSEEGEIL 708

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLL 671
            V+ KG              R G     +S   K   +  V  V GD  + VV  N  ++
Sbjct: 709 TVTEKGFGKRTPVQLYRVQKRGGTGLRNISDVNKTGHVVAVRYVKGDEEIVVVTRNGMMI 768

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              + +I  + R  KGV+L    D  IS V   K 
Sbjct: 769 RMPVSEIGVIGRVTKGVKLIELGDDTISKVAVVKD 803



 Score = 40.9 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 58/186 (31%), Gaps = 14/186 (7%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           E F  +T     R    E      +        ++   VV +  G I       V     
Sbjct: 621 EEFENATSNRGVRAIRIEPGDEIVSARVST--SEKETLVVATKLGMIIRFPVSDVRRMGR 678

Query: 544 H---------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
           +             + + + +       IL ++  G     P       +  G  ++ + 
Sbjct: 679 NAAGVQAIKLQPGDEVVSMDVVPSEEGEILTVTEKGFGKRTPVQLYRVQKRGGTGLRNIS 738

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKL 652
           D+N    +V         +++VV+  G    +  SEI    R  KG   +++  ++ +  
Sbjct: 739 DVNKTGHVVAVRYVKGDEEIVVVTRNGMMIRMPVSEIGVIGRVTKGVKLIEL-GDDTISK 797

Query: 653 VVKVTG 658
           V  V  
Sbjct: 798 VAVVKD 803


>gi|288932437|ref|YP_003436497.1| DNA gyrase subunit alpha [Ferroglobus placidus DSM 10642]
 gi|288894685|gb|ADC66222.1| DNA gyrase, A subunit [Ferroglobus placidus DSM 10642]
          Length = 775

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 252/745 (33%), Positives = 420/745 (56%), Gaps = 35/745 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   ++  YL YA+S I  RA+PD+RDG KPV RRI+++M EMGL     ++KSARIVG
Sbjct: 6   EIAEEIKTSYLDYAMSVIVGRALPDVRDGLKPVQRRILYSMYEMGLFSNRNYRKSARIVG 65

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+GK HPHGD +VY++LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTEAR+T++A
Sbjct: 66  DVLGKYHPHGDAAVYEALVRMAQDFNMRYPLIDGQGNFGSIDGDEPAAMRYTEARLTKIA 125

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L+ +D+D VDF   ++    EP V P+ FPNLLANG+SGIAVGMAT+IP HN++EIC
Sbjct: 126 EEMLKDIDKDTVDFVPNFDNTLKEPSVLPAAFPNLLANGSSGIAVGMATNIPPHNLREIC 185

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A +  I NP++++ +L++++ GPDFPTGGIIV   E I+++Y  GRG   +R +   E+
Sbjct: 186 DAIVEYIRNPDVTVRELMKHVKGPDFPTGGIIV-GVEGIIKAYETGRGRIILRGKVEFED 244

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  I++ E+PY V+KS ++EKIA L+   ++  ++ +RDES  +   V+      +
Sbjct: 245 -----NAIIIREVPYTVRKSLIVEKIANLVKEGKLEEVKAVRDESDREGIRVVVELKSGV 299

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D +L+++ +++ + ++  + + +  L     P+++ L  ++ E++ HRREV+ RR+++ +
Sbjct: 300 DKNLVLKKLYLYTPLQITYSIMLLALVNT-QPKILTLKDLIAEYVNHRREVVRRRTAYEL 358

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLR 437
           +  + R+ +L+G  I   N+DE I++IR+     + K  +++RFSL+E Q DA+L +RL+
Sbjct: 359 EKAEERIHVLEGFKIVISNLDEAISLIRSSKSPSEAKEKLINRFSLSEKQADAVLQMRLQ 418

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  +E   I  E + L  + +++ S+L+S ++    I  E+ E+K+ +        RRT
Sbjct: 419 KLTSMEIDGILKEYEELDKKIKELKSILSSQEKMDEIIIKELEEIKKNYGD-----DRRT 473

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGD 549
              E         +   I+ E   ++I+  G+ +          +   V  S +  ++GD
Sbjct: 474 KIVEKYEE---ITEVDTIKDEENVLIITKDGYAKRLDESDFRVQRRGGVGTSGISLRDGD 530

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
                +   + DRILL + DGKA+++ A  +      G+ + L   L    +IV    + 
Sbjct: 531 YAAYIVKVRSLDRILLFTKDGKAFSINAYEIPKQERSGKGVSLKRFLRIEDEIVGIVPF- 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
               +++++  G    V  +E     R G     ++S E +  V K+ G  V +  EN +
Sbjct: 590 GKGSVVILTESGYIKKVNIAEFENAKRSGI----LASPESVAFVKKLDGKEVIIATENGR 645

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           L+ F  +++PE  R  +GV+  S     I+      +      +      Y +       
Sbjct: 646 LVRFKAEEVPEYKRNARGVKAVSLDGDKIA---WMDVGSEDLILTLTENGYGKMTKTEEF 702

Query: 729 WLGKRGGVGSLVPKGFPRSGKFLSS 753
            L  RG  G    K   ++GK + +
Sbjct: 703 RLTGRGAKGVTAHKVNEKTGKLVFA 727



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 11/132 (8%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G+     A  +   + +   ++    ++ + D +      S   +L ++  G   + 
Sbjct: 641 TENGRLVRFKAEEVPEYKRNARGVK---AVSLDGDKIAWMDVGSEDLILTLTENGYGKMT 697

Query: 627 EESEIIANTR--KGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           +  E     R  KG T  KV+ +  K+     V  D + V+ ++  +++    QIP M R
Sbjct: 698 KTEEFRLTGRGAKGVTAHKVNEKTGKLVFAEFVKSDKLMVISKDGNVIVVETKQIPVMGR 757

Query: 684 GK-GV----RLQ 690
              GV    +  
Sbjct: 758 NAVGVAVSKKGI 769


>gi|313835160|gb|EFS72874.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA2]
 gi|314929136|gb|EFS92967.1| DNA gyrase, A subunit [Propionibacterium acnes HL044PA1]
 gi|314970917|gb|EFT15015.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA3]
          Length = 891

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 231/791 (29%), Positives = 378/791 (47%), Gaps = 49/791 (6%)

Query: 1   MGVDNISNSNTLVEEN---------VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQELVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+  A    + +P+ S E+     +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNRAVQWSLAHPDASSEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G  ++  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGA-LIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           EL+ + RI  + DIRD+S+    + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 ELVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VD-NVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +           + E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASDDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+ +          K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSGRGHGEAIQ-----LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               L       +          +       ++T   Y+    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDAKGGHVAGLLSFLPDEKIAQVMTLRSYEDAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-K 685
             ++ + G   +     ++++    + + GD V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAINFRTEDDELIGAEQCSAGDDVLLISRKGQAIRFSAGDDQLRSMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFK----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           GV    ++       +         +      + G  Y +           RGG+G    
Sbjct: 711 GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGLGIKAM 770

Query: 742 KGFPRSGKFLS 752
                 G  + 
Sbjct: 771 ALSEERGSLVG 781


>gi|322370372|ref|ZP_08044931.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253]
 gi|320550080|gb|EFW91735.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253]
          Length = 831

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 251/768 (32%), Positives = 405/768 (52%), Gaps = 35/768 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D  S+    V E VK+V +   +E+ Y+ YA+S I  RA+PD+RDG KPVH+RI++A
Sbjct: 1   MSSDT-SDLPDEVAEKVKSVRVEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHKRILYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M   G+   A+ +KS+ IVG+ +G  HPHGDQS+YD+L R+AQ F  RYPLI GQGNFG+
Sbjct: 60  MHRSGVTSNASHRKSSNIVGDTMGDFHPHGDQSIYDALARMAQTFSMRYPLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTEARM  ++E +L  ++ D VDF+  Y+    EP V PS  PNLL NG+
Sbjct: 120 VDGDPPAAMRYTEARMDSLSEEMLADIEMDTVDFKPNYDGRLEEPEVLPSAVPNLLINGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGM+T+IP HN+ E+ +A + LIDNP+ ++E L+E++ GPDFPTG  IV  R +I 
Sbjct: 180 SGIAVGMSTNIPPHNLGEVIDATVELIDNPDATVEDLMEHVKGPDFPTGANIV-GRNAIH 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y+ GRG  RVRA + V++       IV+TE+P+Q  K+RLI++IA+ +    I  + D
Sbjct: 239 QAYKTGRGRLRVRAEYEVQDD-----RIVITELPFQTNKARLIQRIADHVNDGTIEGIRD 293

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   V+    ++  P+++  +  +   +E  F +    L     P+V+ L  +
Sbjct: 294 LRDESDRDGIRVVVELKQNAIPEVVE-NQLLNHRLERTFSIISLALVD-GQPKVLTLKEL 351

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L+ +L HRR+V+ RRS F +   + R  IL+G L A  NID+++ +IRN D     +  +
Sbjct: 352 LQHYLDHRRDVVRRRSEFELDEAEERAHILEGRLRALDNIDDVVELIRNADDRDGARSGL 411

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              F  +E Q + I+ ++L SL  LE  +I++E +++ A  E+++++L    +    I  
Sbjct: 412 QGTFDFSEKQAEHIVRMQLGSLTSLESEEIEAEYEDVTARIERLETILGDESELLGVIKE 471

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
           E+ E+KE ++       RRT   E +       ++ +I +E + VV++ + +++ +    
Sbjct: 472 ELLEMKEKYADE-----RRTKIVEDTSE---VTREDLIAEEDVFVVVTEQDYVKRMPIEQ 523

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HG 587
                     +     KE D++     A+T D +L  +  G+ Y L    +        G
Sbjct: 524 FDAQGRGGKGIIGADVKEDDTVSKVFRANTHDYLLCFTNHGQVYRLKTYEIPEMSRTARG 583

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++   ++DL+  +DI        ++    L +V+ +G        E       G    ++
Sbjct: 584 KSAVNILDLDKGEDITAVITTDEFEEDESLSMVTQQGYVKRTAAKEFENILSTGIIAARL 643

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              +K+  V    G   + V  +N   + F   +  EM R  +GV      D      + 
Sbjct: 644 EDGDKLVDVKVTDGTKDLLVSTKNGMTIRFDETEAREMGRSARGVHGIRLDDDDEVVGMV 703

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +    +    R Y +           R G G +  K   R+G  
Sbjct: 704 AANGDVDDLLTVTRRGYGKRTKLTEYRSQSRNGKGLIDIKTGDRNGHV 751



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 592 LLIDLNHNQDIVTAFVYDST-CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             I L+ + ++V     +     LL V+ +G     + +E  + +R GK  + + + ++ 
Sbjct: 689 HGIRLDDDDEVVGMVAANGDVDDLLTVTRRGYGKRTKLTEYRSQSRNGKGLIDIKTGDRN 748

Query: 651 KLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
             V      +  DH+ ++ E  +++    + I E+ R   GV +    +      +    
Sbjct: 749 GHVTEIKTVIEDDHLVLMSERGQIMRIRAEDISEVGRNTMGVTVMDVDEDDRVASVDVIP 808

Query: 706 CEGLTWI 712
            E    +
Sbjct: 809 AEAAEAV 815


>gi|295101858|emb|CBK99403.1| DNA gyrase subunit A [Faecalibacterium prausnitzii L2-6]
          Length = 859

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 228/745 (30%), Positives = 374/745 (50%), Gaps = 18/745 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            ++  +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G D    ++KSA  VG
Sbjct: 19  DVKKEIETAFLDYSMSVIVARALPDVRDGLKPVHRRILYTMHERGNDPSHPYRKSADTVG 78

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V+G  HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  AAYRYTEARM+++A
Sbjct: 79  AVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMA 138

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  +D+D +++   ++E   EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ 
Sbjct: 139 VEMLTDIDKDTINWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVI 198

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +A I++P+I +  L+E+I GPDFPT G I+  R  I  +Y  GRG   +R R  +EE
Sbjct: 199 DGCVAYIEDPDIDLPGLMEHIKGPDFPTAG-IIMGRSGIRAAYATGRGKITLRGRATIEE 257

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
              G   I++TEIPY V K+RLIE +AEL+  KRI  +  + DE+      ++    +  
Sbjct: 258 TKNGRTQIIITEIPYMVNKARLIENMAELVKDKRIEGITGLNDETNRKGMRIVVDIRKDA 317

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +  +++  ++  + ++    + M  +   +VP+VM L  ++++++  + EV+ RR+ + +
Sbjct: 318 NAQVILNQLYQYTQLQDTVGVIMLAIDH-KVPKVMTLKQMIQKYVEFQDEVVRRRTQYDL 376

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED----KPKPVMVSRFSLTENQVDAILNLRL 436
           +    R  IL+GL  A   +DE+IA IR       + K  ++ +F   + Q DAI+ L+L
Sbjct: 377 KKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDDPQADAIVKLQL 436

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L  LE  +I+ EL  L A+ E  + +L +  +    +  E+ ++K+ F        + 
Sbjct: 437 GRLAGLEILKIEEELSGLQAKIEDWEDILANDARVLEIVKNELLDMKKRFGDERRTEIQS 496

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
            T         A  Q      E   +    +   ++ K     +S +  KE D ++    
Sbjct: 497 VTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIVQEMFV 556

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAFVYDSTC-- 612
             T D +L ++  G+ + +    +  G    +      L+ L   + +     Y      
Sbjct: 557 GSTHDYVLFVTDKGRLFRIKGYTIAEGSRTSKGSNIINLLQLAEGEKVTNMLCYPKDEDN 616

Query: 613 ---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENR 668
               + +V+ +G        +     + G   + ++  + +      TG+  + V   N 
Sbjct: 617 KGGFVTMVTKQGLIKRTPLEQYANIRKTGLIGIALNEGDALAWTRLTTGNDMLIVATRNG 676

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           + + F+      M R G GVR     +G     +C    EG T +        R  +   
Sbjct: 677 QAIRFNEADARPMGRSGHGVRAIKLAEGDEVVGVCIC-REGGTVLTVTENGKGRRSDIDT 735

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  RGG G           K  +
Sbjct: 736 YRITARGGKGIRNYDASK--DKVAA 758



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 4/174 (2%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L  +   EGD+L         D +++ + +G+A      +       G      I L  
Sbjct: 645 GLIGIALNEGDALAWTRLTTGNDMLIVATRNGQAIRFNEADARPMGRSG-HGVRAIKLAE 703

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVT 657
             ++V   +      +L V+  G     +        R GK       S++K+  V  V 
Sbjct: 704 GDEVVGVCICREGGTVLTVTENGKGRRSDIDTYRITARGGKGIRNYDASKDKVAAVKIVD 763

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             D V +  +   ++    ++IP  SR G GVR+    +     V+     +  
Sbjct: 764 DIDDVLLSSQEGIIIRLHANEIPVQSRYGSGVRVMRLGENDKVMVLARTDHDDE 817


>gi|320535587|ref|ZP_08035684.1| DNA gyrase, A subunit [Treponema phagedenis F0421]
 gi|320147550|gb|EFW39069.1| DNA gyrase, A subunit [Treponema phagedenis F0421]
          Length = 838

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 228/759 (30%), Positives = 385/759 (50%), Gaps = 15/759 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     +  + +   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MEEITTPEGGILIPIPIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +    +K A+IVG+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD 
Sbjct: 61  LRYSGPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAAYRYTEA+M ++AE +++ + ++ VDF   +++   EP V P+KFP LLANG+SGIAV
Sbjct: 121 AAAYRYTEAKMAKIAESMVEDIKKETVDFISNFDDSTKEPTVLPAKFPFLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN++EI  A  A IDNPEI+I++L ++I GPDFPTGG I   ++ I ++Y+ 
Sbjct: 181 GMATNMPPHNLREIASAISAYIDNPEITIDELCKHIKGPDFPTGGTIF-GKKGIRQAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG   VR R+ +E   +G   I+ TE+PYQV  + L+ +I EL   K I  + ++ DE 
Sbjct: 240 GRGKILVRGRFTIEVDKKGKETIIFTEVPYQVNTTNLVTRIGELARNKVIDGIANVNDET 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      ++    R     +++  +F  + +++ F +    L     PQ + L  +++ +
Sbjct: 300 SDRTGLRIVIELKRGAITKVVLNQLFAKTALQSSFGVINLALV-EGRPQTLTLKDLVRCF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRF 421
           + HR EV+ RR+ F ++  + R  IL+ L++A  NIDE+IAIIR+          ++ RF
Sbjct: 359 VNHRIEVVTRRTRFDLRKAEERAHILRALIVAIDNIDEVIAIIRSSADTPTAKLNLMKRF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              E Q  AI++++L+ L  LE   ++ EL+ L      +  LL   ++    +  E  E
Sbjct: 419 GFDEVQSQAIVDMQLKRLTNLEIKDLRKELEELEILIAHLKDLLEHPEKIRALVKDETNE 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-ITVVISNRGWIRSLKSHSVDL 540
           + + F              E++  D    ++ +I       +        +S        
Sbjct: 479 IADKFGDERRTDIVADEVEELNIEDLIQKEEMVILISNLGYIKRIPVSAYKSQNRGGKGS 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
           ++ +  E D +     A T D I+ ++ +GKAY L    +           I+ L+ ++ 
Sbjct: 539 NSANLAEDDFIDQIFTASTHDYIMFITNEGKAYWLKVHEIPEASRTSRGSHIKSLLSVSG 598

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           +++I        +  +  LL+ ++ G    V          +G   +K+   +K+   + 
Sbjct: 599 DEEITAVVSLKEFSDSTYLLMATAAGVVKKVTTDNFQNAKTRGIIAIKLDDGDKLVSAIL 658

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWID 713
            TG D + ++  + + L  + ++I  + R  +GV       G        ++ +    + 
Sbjct: 659 TTGKDEIMLITRHAQALRMTEEEIRPLGRASRGVAGIKLAQGDELT-GALRVADNQKMLI 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +           R   G  +     ++G+ + 
Sbjct: 718 MTENGYGKRVEFSEFTPHGRATGGQRIYTLSEKTGEVVG 756



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 5/119 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEK 649
           I L    ++  A       K+L+++  G    VE SE   + R   G+    +S    E 
Sbjct: 695 IKLAQGDELTGALRVADNQKMLIMTENGYGKRVEFSEFTPHGRATGGQRIYTLSEKTGEV 754

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           + L+  +  D V  +    K +  ++D I  M R  +GVR+   +   I   +     E
Sbjct: 755 VGLLTVLDDDEVVCITGQGKTIRVNVDSISIMGRSAQGVRVLDIESPDILIGLDVVARE 813


>gi|123966386|ref|YP_001011467.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9515]
 gi|123200752|gb|ABM72360.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
          Length = 863

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 235/789 (29%), Positives = 379/789 (48%), Gaps = 41/789 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           VD+  +S +   E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 5   VDSGDSSLSENNERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMY 64

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D
Sbjct: 65  ELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVD 124

Query: 123 GDSAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            D  AA RYTE+R+  + +  +L+ ++ + VDF D ++    EP V P++ P LL NG+S
Sbjct: 125 NDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSS 184

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+     ++I NP +  ++L E I GPDFPTGG I+  R+ I E
Sbjct: 185 GIAVGMATNIPPHNLGELINGLKSIIKNPLMEDKELFELIKGPDFPTGGQIL-GRDGIKE 243

Query: 242 SYRLGRGGFRVRARWCVEEVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
           +++ GRG   +R    +E++          +++TE+P+Q  K+ LIE+IA+L+  K++  
Sbjct: 244 TFKSGRGSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNDKKLEG 303

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + DIRDES  D   ++    R   P +++ ++F L+ ++  F  N+  L     P  + L
Sbjct: 304 ISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALV-NGEPTTLSL 362

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---K 414
             +L  +L  R   + RR++F ++  + R  I+KGLL+A   +D II +IR+       +
Sbjct: 363 RKMLDVFLDFRIVTIKRRTTFLLKKAEERDHIIKGLLLALEAMDNIINLIRSAKDTTSAR 422

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             +     L+  Q DAIL ++LR L  LE  +IKSE D L  +     ++L    +    
Sbjct: 423 EQLQKDHELSVIQADAILQMQLRRLTALEADKIKSEHDELTRKITDYKNILQDKDRINEI 482

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  E+ ++ E FS                    A  +  ++      +         S  
Sbjct: 483 ILEELSKIDERFSSPRKTEILNLGGGLDDIDLIANERSVVLLTSAGYLKRMPVSEFESTS 542

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
             S   +    +E D + + +  +  D +LL S  G AY LPA  +       +      
Sbjct: 543 RGSRGKAGTKNQEDDEVNLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTAKGTPSVQ 602

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ +   + I +      +D+   LL+++  G       S        G   + +   + 
Sbjct: 603 LLPIPREEQITSIVSVESFDNDRYLLMLTKAGFIKRTPLSAFSKIRSNGLIAINLEEGDA 662

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +  V     GD V +       + F +D  ++  + R  +GV+  + KDG     +    
Sbjct: 663 LTWVRLSKEGDSVLIGSSKGMTIHFRLDNNELRPLGRTARGVKSMNLKDGDKLVSMDVLT 722

Query: 706 CE----------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +                      G   + ++     +        L KR G+G    K 
Sbjct: 723 SDLVDQLASLENENDEDIESNSSKGPWVLVASAFGLGKRVPVAQFRLQKRAGMGLRAIKF 782

Query: 744 FPRSGKFLS 752
             +    + 
Sbjct: 783 RIKDDSLVG 791



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVS-SEEKMKLVVKV-TGDHVAVVGENRK 669
           +LV S+ G    V  ++     R G     +K    ++ +  +  +  G+ +  V E   
Sbjct: 750 VLVASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDDSLVGLKVLGEGEELIFVTERGV 809

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           ++  + D+I + SR   GVRLQ   DG     +     E + 
Sbjct: 810 IVRTNADKISQQSRAATGVRLQRLDDGDHLSEVVLVPHEQID 851


>gi|85373274|ref|YP_457336.1| DNA topoisomerase IV subunit A [Erythrobacter litoralis HTCC2594]
 gi|84786357|gb|ABC62539.1| DNA topoisomeraseIV subunitA [Erythrobacter litoralis HTCC2594]
          Length = 769

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 373/770 (48%), Positives = 519/770 (67%), Gaps = 26/770 (3%)

Query: 6   ISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +S+   + E    + +       ALEERYL YALSTI  R++PDLRDG KPVHRR++  M
Sbjct: 1   MSDPTEITEPDPFDAIVDAPFDSALEERYLVYALSTITARSLPDLRDGLKPVHRRLLWTM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            ++ LD    FKKSAR+VGEVIGK HPHGD + YD++VRLAQ F  RYPL+ GQGNFGNI
Sbjct: 61  RQLKLDPTNTFKKSARVVGEVIGKYHPHGDTAAYDAMVRLAQDFALRYPLVEGQGNFGNI 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD+AAAYRYTEAR+T+ A  ++ G+DE  VDF  TYN E+ EP + P  FPNLLANG S
Sbjct: 121 DGDNAAAYRYTEARLTRTAMALMAGLDEGTVDFIPTYNGEEEEPELMPGLFPNLLANGAS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IPSHNV EI +A L LIDNP +   +L+E   GPD PTGG+IV+S E I  
Sbjct: 181 GIAVGMATNIPSHNVHEIIDATLELIDNPHVEHARLMELFQGPDLPTGGLIVDSPEVISN 240

Query: 242 SYRLGRGGFRVRARWC-------------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           +Y  GRG FR+R R+              +E +G G W +V++EIPYQVQK +LIE+IA+
Sbjct: 241 AYETGRGSFRIRGRFHAAEAEKQADQGAGIERLGGGQWQLVISEIPYQVQKGKLIEQIAQ 300

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
            I  K++P+L+D+RDES E +RIVL P++R++DP+LL ESI+ L+DMETRF LN+NVL  
Sbjct: 301 AIADKKLPILDDVRDESDEQIRIVLVPRSRNIDPELLKESIYKLTDMETRFGLNLNVLDA 360

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
            R P VM L  +L+ W+  + E+L RR+  R+  I RR+E+++G +IA+LN+D +I IIR
Sbjct: 361 TRTPMVMGLKELLENWVRSQIEILQRRTQHRLDQIARRLELVEGYIIAFLNLDRVIEIIR 420

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
            ED+PK VM++ FSLT+ Q +AILN+RLRSLRKLEE ++K E  +LLAE+E+++ LL S 
Sbjct: 421 YEDEPKQVMMAEFSLTDRQAEAILNMRLRSLRKLEEMELKQEKTDLLAEQEELEKLLGSP 480

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +Q  ++  +++ +++ +   T+LG RRTT  E           AMIEKEP+TVV+S +G
Sbjct: 481 ARQRTRLKRDLKALQKEYGLDTELGARRTTIAEAEPT-VEFSMDAMIEKEPVTVVLSQKG 539

Query: 529 WIRSLKSH------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           W+R+ K H              +KEGD    A+H  TTD++LL + +G+ +TL A  L  
Sbjct: 540 WVRAAKGHVDLEGSKDGCGDFKYKEGDGPAFAVHCQTTDKVLLAADNGRFFTLGADKLPG 599

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            RG GE ++  +D++    IV   V +   +LL+ +  G  F  E  E++A TRKGK  +
Sbjct: 600 ARGFGEPVRNTLDIDAEAQIVAMLVSNPRGRLLLAADTGKGFAAEMGELVAETRKGKQVV 659

Query: 643 KVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700
            +  + K+++V  +    DHVAVVGENRKL++F+++++P ++RG+GV+LQ Y+DGG+SD 
Sbjct: 660 NLKGDAKLRVVRPIADCDDHVAVVGENRKLVVFNLEELPVLARGQGVQLQRYRDGGLSDA 719

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             F + +GL+W         R+E D+  W   RGG G L P+GFPR  +F
Sbjct: 720 KTFVLDQGLSWQMGGKGDRTRTETDIWQWKVARGGAGRLPPQGFPRDNRF 769


>gi|158423952|ref|YP_001525244.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571]
 gi|158330841|dbj|BAF88326.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571]
          Length = 917

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 257/849 (30%), Positives = 404/849 (47%), Gaps = 106/849 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  ++          +++ VS+   L   YL YA+S I  RA+PD+RDG KPVHRRI+ +
Sbjct: 1   MADNDTPPQGGATPSDIRPVSITDELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G ++   ++KSAR+VG+VIGK HPHG+QSVYD+LVR+ Q F  R PLI GQGNFG+
Sbjct: 61  MHENGYEWNKQYRKSARVVGDVIGKYHPHGNQSVYDALVRMVQTFSMRVPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTE R+ +V + +L  + +D VDF+  Y+  ++EP V P++FPNLL NG 
Sbjct: 121 VDGDPPAAMRYTEVRLEKVTQSLLDELGQDTVDFQANYDNSENEPSVLPARFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +  +AL+D+P +  E LL+YI GPDFPTG  ++  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDGTVALLDDPVMDPELLLDYIPGPDFPTGA-LIMGRSGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +RAR  +E V +    I++TEIPYQV K+ +IEKIAEL+  KR+  + +
Sbjct: 240 QAYMTGRGSIMMRARATIETVRKEREAIIITEIPYQVNKATMIEKIAELVRDKRLEGIAE 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  +   V+    R    D+++ +++ ++ ++T F +NM  L  G  P VM L   
Sbjct: 300 IRDESDREGMRVVIEVKRDAQADVVLNNLYRMTPLQTSFGVNMVAL-SGGRPAVMTLHDT 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           L  ++A R EV+ RR+ F ++    R  +L GL IA  NIDEII +IR    P       
Sbjct: 359 LTAFIAFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEIIQLIRTAPDPGTARERL 418

Query: 420 ----------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L+  Q  AIL+LRL+ L  L   +I  EL
Sbjct: 419 MERHWPAKDVASLVALIADPRHVVASDGTYRLSMEQARAILDLRLQRLTALGRDEISDEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  E  +   +L S  +    I  E+  ++  F+       RRT   E          
Sbjct: 479 DKLALEIAEYLEILASRPRMRAIIREELLALRAEFNTP-----RRTEITE---GFGDLDD 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA+  ++ D +     A T   +
Sbjct: 531 EDLIAREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPV 590

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G+ Y L    L   + +  G+A+  ++ L  ++ I +              +++
Sbjct: 591 LFFSSKGQVYKLKVWRLPAAAPQARGKALINILPLQPDERITSIVPLPENLEEHSLWQIM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
             ++ G       ++     R GK  +K+   E++  V        V +   N   + F 
Sbjct: 651 FATTGGTVRRNALADFSQVNRNGKIAMKLEEGEQIASVQLCNEHQDVLLTTANGACIRFP 710

Query: 675 IDQIPE-MSRGK-GVRLQSYKDGG-ISDVICFKICE------------------------ 707
           + ++     R   GVR    ++G  +  +      +                        
Sbjct: 711 VPEVRLFKGRDSVGVRGIRLEEGDRLISMAIINHTDAAAEERVQYLRQSRAQAAEDAPIE 770

Query: 708 -----------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                                      +  +   Y +  +     +  RGG G +     
Sbjct: 771 LEGEAPAAEGKLDPVKFLEMETNEQFILTLSENGYGKRTSSYEYRVTGRGGKGIVAMAVN 830

Query: 745 PRSGKFLSS 753
            R+GK ++S
Sbjct: 831 ERNGKLVAS 839



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSS-EEKMKLVVKV-TGDHVAVVG 665
           +   +L +S  G        E     R GK    + V+    K+     V   D + +V 
Sbjct: 793 NEQFILTLSENGYGKRTSSYEYRVTGRGGKGIVAMAVNERNGKLVASFPVRDADQIMLVT 852

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +  +L+   ++ I  + R  +GV +           +
Sbjct: 853 DGGQLIRCPVNGIRIVGRSSQGVIVFDTAADERVVSV 889


>gi|94985121|ref|YP_604485.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300]
 gi|94555402|gb|ABF45316.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300]
          Length = 809

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 226/759 (29%), Positives = 391/759 (51%), Gaps = 34/759 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V +   ++  ++ YA++ I +RA+PD+RDG KPV RRI++AM + GL       KS
Sbjct: 3   GIHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLQEGLASNQKHAKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+ K HPHGD S+YD++VRL Q +  RY L+  QGNFG+IDGD  AA RYTEAR
Sbjct: 63  AAVVGEVMKKYHPHGDASIYDAMVRLGQWWNMRYTLVDPQGNFGSIDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT++AE +L  ++++ V  +  Y+E   EP V PS  PNLL NG +GIAVGMAT+IP HN
Sbjct: 123 MTKIAEEVLADLEKETVLLKPNYDETTVEPAVLPSAVPNLLINGAAGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI    LALID P+I++++++ +++GPDFPTGG I  SR+ I E+Y  G  G +VR +
Sbjct: 183 LTEISNGLLALIDKPDITLDEMMTHVLGPDFPTGGRI--SRQGIREAYATGHAGLKVRGK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-RIVLF 314
             ++E   G   IV+TEIPYQV K+ LI+ I+ +  A +IP +  +RDES       ++ 
Sbjct: 241 ARIDE-KNGRAQIVITEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVV 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P L++  ++  + +++ F +    +     P+V+PL   ++ +L HRR+V+ R
Sbjct: 300 ELKRGAIPTLVLNQLYKYTQLQSTFTVMNLSIV-NGEPRVLPLIDTMRAFLDHRRDVVTR 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAI 431
           R+ + ++  + R  IL+GL+ A  +IDE+I  IR  +       +      LTE Q  AI
Sbjct: 359 RTQYDLKKAEERAHILEGLIKALDHIDEVIERIRASNTAAEARDALMQRFTLTEIQAQAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++ +E D L     ++ S+L   +  W +I  EIR++++ +     
Sbjct: 419 LDMRLQRLVGLEREKLVAEYDELQKVIARLRSILGDERLLWREIKKEIRDIRDRYGDE-- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------AL 543
              RR+T  ++        ++ +I  E + + ++  G+++  K  +              
Sbjct: 477 ---RRSTITDLEDD---ISKEDLIAVEDMVITMTKAGYLKRTKLDAYRAQSRGGRGASGG 530

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL---IDLNHNQ 600
             +E D+        T D +L  +  G+ +     +L       +   +      L  ++
Sbjct: 531 RLREEDANTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDAKGTHIRNLIPALREDE 590

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKV 656
           +I +      ++     +  + +G       +E    T  G   + +   +++  V ++ 
Sbjct: 591 NIASVLSVKGFNEPGSFVFATKRGMVKKTLITEYGNITSAGLIAINLQPGDELIGVDIQR 650

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKI--CEGLTWID 713
            GD V +  +  + + F+  ++ +  R  +GV     ++G     +       E    + 
Sbjct: 651 DGDDVVLATKEGQAMRFAATEVRDTGRATQGVIGIRLREGDEVVSMALVPSGEESSELLA 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +     +           RGG+G +      ++GK ++
Sbjct: 711 ISECGLGKRTPVSDYPSKGRGGLGVITLDVTDKTGKLVA 749



 Score = 44.8 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 43/145 (29%), Gaps = 2/145 (1%)

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +    +            + +      E  S+ +      +  +L +S  G     P  +
Sbjct: 665 MRFAATEVRDTGRATQGVIGIRLREGDEVVSMALVPSGEESSELLAISECGLGKRTPVSD 724

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-- 637
             S    G  +  L   +    +V         +L+V++ KG        E+    R   
Sbjct: 725 YPSKGRGGLGVITLDVTDKTGKLVALTHVAGNEELMVLTEKGTVIRTRVEEVRVTGRNAQ 784

Query: 638 GKTFLKVSSEEKMKLVVKVTGDHVA 662
           G   + +  ++++     +  +   
Sbjct: 785 GVKVINLGEKDRVISAFPIRREDEL 809


>gi|170748569|ref|YP_001754829.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831]
 gi|170655091|gb|ACB24146.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831]
          Length = 910

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 252/851 (29%), Positives = 401/851 (47%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  ++ + +     + ++ VS+   +   YL YA+S I  RA+PD RDG KPVHRRI+++
Sbjct: 1   MAENDPTGAAPPASD-IRPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYS 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
             E G      + KSARIVG+VIG  HPHGDQS+YD+LVR+AQ F  R  LI GQGNFG+
Sbjct: 60  AFESGHLPERKYVKSARIVGDVIGLYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTE+R+ + A  +L  +D++ VDF   Y+E   EP V P++FPNLL NG 
Sbjct: 120 VDGDPPAAMRYTESRLAKPATALLTDIDKNTVDFGPNYDESREEPTVLPARFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A +ALID+P ++IE+L E + GPDFPTGG+I+  R    
Sbjct: 180 GGIAVGMATNIPPHNLGELIDACVALIDDPGLTIEQLTEIVPGPDFPTGGMIL-GRAGTR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +RA+  VEE+ +    ++ TEIPYQV K+ L+EKIAEL+  KR+  + D
Sbjct: 239 QAYATGRGSVIMRAKSHVEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGISD 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES      ++    R    D+++  ++  + +++ F  NM  L+ G  P++M L  +
Sbjct: 299 LRDESDRSGMRIVVEIKRDAMADVVLNQLYRFTPLQSSFGCNMVALN-GGRPELMNLKDL 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+ ++  R EV+ RR+ F +     R  +L GL IA  NIDE+I +IR    P     + 
Sbjct: 358 LQAFVDFREEVVSRRTKFLLGKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNAAREAL 417

Query: 421 FS-----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                          L+E Q  AIL+LRL+ L  L   ++  EL
Sbjct: 418 MGRDWPAHDIAPLIALVDDPRHRVAEDGTYRLSETQARAILDLRLQRLTALGRDEVGDEL 477

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L  E      +L S  +    +  E+ EV+E F+       R+T   +   +      
Sbjct: 478 KTLADEIADYLDILRSRARIQGIVKGELAEVREQFATP-----RKTEIVDFDGS---VED 529

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      S +  ++ D +     A+T   +
Sbjct: 530 EDLIAREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPV 589

Query: 564 LLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL-NHNQDIVTAFVYDSTC------KL 614
           L  S+ G+AY      L        G+A+  ++ L + ++ I T               +
Sbjct: 590 LFFSSQGQAYKEKVWRLPMAAPNARGKALVNILQLQDTSERITTIMPLPEDEASWETLDV 649

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIF 673
           +  +++GN    + S+     R GK  +K+   + +  V     D  V +     + + F
Sbjct: 650 MFATARGNVRRNKLSDFTTVNRNGKIAMKLDPGDHIVHVEICRPDQNVLLTTALGQCIRF 709

Query: 674 SIDQIPE-MSR-GKGVRLQSY-KDGGISDVICFKI------------------------- 705
            ++ +     R   GVR     KD  +  +                              
Sbjct: 710 PVEDVRVFKGRDSTGVRGILLGKDDKVISMTILNAFDATAEERAGYLKMRRAVTGESEEN 769

Query: 706 -----------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                                        +  + R + +  +        RGG G    +
Sbjct: 770 GDAEAEDGAEAAAISLDRYNEMGAAEQYVLTLSERGFGKRSSSFEYRTSGRGGKGITAMR 829

Query: 743 GFPRSGKFLSS 753
              R+G  ++S
Sbjct: 830 VNARNGSLVAS 840



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 50/234 (21%), Gaps = 56/234 (23%)

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--- 630
            +    L          ++ + L+    IV   +      +L+ ++ G        +   
Sbjct: 657 NVRRNKLSDFTTVNRNGKIAMKLDPGDHIVHVEICRPDQNVLLTTALGQCIRFPVEDVRV 716

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT--------------------------------- 657
                  G   + +  ++K+  +  +                                  
Sbjct: 717 FKGRDSTGVRGILLGKDDKVISMTILNAFDATAEERAGYLKMRRAVTGESEENGDAEAED 776

Query: 658 ------------------GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGIS 698
                               +V  + E       S  +     RG KG+          S
Sbjct: 777 GAEAAAISLDRYNEMGAAEQYVLTLSERGFGKRSSSFEYRTSGRGGKGITAMRVNARNGS 836

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            V  F +      +                 +  R   G  V     +  K +S
Sbjct: 837 LVASFPVEASDQIMLVTDGGQLIRVPVDDIRIVGRASQGVTVFN-TAKDEKVVS 889


>gi|307151872|ref|YP_003887256.1| DNA gyrase subunit A [Cyanothece sp. PCC 7822]
 gi|306982100|gb|ADN13981.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7822]
          Length = 852

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 248/789 (31%), Positives = 387/789 (49%), Gaps = 68/789 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E +    L   + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTQPERIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  ++   +L+ ++ + VDF DT++    EPVV P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQNLSVNALLRDIEAETVDFIDTFDGSQQEPVVLPARLPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ + A+A+I NPEI+  +L++YI GPDFPTGG I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELVDGAIAMIHNPEITNIELMKYIPGPDFPTGGQIL-GRSGIKDAYISGRGS 240

Query: 250 FRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I+VTE+PYQ  K+ LIEKIAEL+  KRI  + DIRDES
Sbjct: 241 ITMRGVAEIETIQHRGRPDRDAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R     +++ +++  + ++  F  NM  L     PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYARVVLNNLYKQTPIQANFGANMLALV-NGEPQILNLKDFLGVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
             R +V+ RR+++ ++  + R  IL+GLL+A  N+D II +IR              +F 
Sbjct: 360 EFRVQVIIRRTTYELRKAEERDHILQGLLVALANLDPIIQLIRQAADTSSAKRELVEQFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I++E   L  +   +  +L   ++    I  E+ ++
Sbjct: 420 LSEVQADAILQMQLRRLTALESEKIQAEHQELQRKIADLTDILQRRERVDQIIQEELTQL 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K   +       RRT   E        +   +I  E   ++++ +G+I+ +  ++    +
Sbjct: 480 KSTHATP-----RRTQIVEEEGG---IVDIDLIANEQAVILLTEQGYIKRMPVNTFGQQS 531

Query: 543 L--------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                      KE D ++  L     D+IL  S  G  Y + A  + S      G  I  
Sbjct: 532 RATRGKSGAKIKEDDGVEHFLSCCDHDQILFFSDRGVVYVISAYQIPSSSRTARGVPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +  ++ I +      +     L++++ +G       S        G   + +S  ++
Sbjct: 592 MLPIPKDEKITSMVAVSEFTEDQYLVMLTRQGYIKKTALSAYANIRANGLIAITLSEGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++ V      D + +       + F  D  Q+  + R  +GVR    K  G  ++I   I
Sbjct: 652 LRWVRLAKEEDSIIIGTRQGMAIHFKADNEQLRPIGRTARGVRSMKLK--GTDEIISVDI 709

Query: 706 CEGLTW-------------------------------IDSAGRSYNRSENDLLGWLGKRG 734
             G                                  +      Y +        L  R 
Sbjct: 710 LPGQVVANIGTSEDEIEDENLESEELVNEETHVGPWVLAITTGGYGKRVPVNQFRLQNRA 769

Query: 735 GVGSLVPKG 743
           G+G    + 
Sbjct: 770 GMGVKAIRF 778



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSS-EEKMKLVVKVT-GDHVAVVGENRK 669
           +L +++ G    V  ++     R G     ++  + ++++  +  V   D + +V     
Sbjct: 746 VLAITTGGYGKRVPVNQFRLQNRAGMGVKAIRFKNAQDQLAAIHIVNQEDEMMIVTSRGI 805

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSY 692
           ++  ++D I   SR   G+R+Q  
Sbjct: 806 IIRQAVDAISPQSRMATGIRVQRL 829


>gi|261325188|ref|ZP_05964385.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261301168|gb|EEY04665.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 922

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/851 (30%), Positives = 408/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM 
Sbjct: 1   MNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD 
Sbjct: 61  LAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  
Sbjct: 181 GMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES
Sbjct: 240 GRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++
Sbjct: 300 DREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P            
Sbjct: 359 AFREEVVTRRTKFLLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRW 418

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  
Sbjct: 419 PAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E      +L S  +  N +  E+  V++ F+       RRT   E+         + +I 
Sbjct: 479 EIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIA 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+I+          +      S +  KE D +     A+T   +L  S+
Sbjct: 531 REDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSS 590

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G  Y      L   + +  G+A+  ++ L   + I T               ++  +++
Sbjct: 591 RGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTR 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F +  +
Sbjct: 651 GTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDV 710

Query: 679 PEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KICEGL 709
                R   GVR  +  +G     +                                + +
Sbjct: 711 RVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDI 770

Query: 710 --------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                     T +  +   Y +  +     +  RGG G      
Sbjct: 771 VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDT 830

Query: 744 --FPRSGKFLS 752
                 GK ++
Sbjct: 831 LKTDEIGKLVA 841



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK       LK     K+  +  V G D + +V
Sbjct: 795 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKLVALFPVEGSDQILLV 854

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 855 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 907


>gi|62290012|ref|YP_221805.1| DNA gyrase subunit A [Brucella abortus bv. 1 str. 9-941]
 gi|82699940|ref|YP_414514.1| DNA gyrase subunit A [Brucella melitensis biovar Abortus 2308]
 gi|225852600|ref|YP_002732833.1| DNA gyrase subunit A [Brucella melitensis ATCC 23457]
 gi|254689326|ref|ZP_05152580.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|254717610|ref|ZP_05179421.1| DNA gyrase subunit A [Brucella ceti M13/05/1]
 gi|256263907|ref|ZP_05466439.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260546566|ref|ZP_05822305.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260754841|ref|ZP_05867189.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|260758058|ref|ZP_05870406.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|260761882|ref|ZP_05874225.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|261219445|ref|ZP_05933726.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1]
 gi|261314178|ref|ZP_05953375.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317733|ref|ZP_05956930.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94]
 gi|261321941|ref|ZP_05961138.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|265988764|ref|ZP_06101321.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265995015|ref|ZP_06107572.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998229|ref|ZP_06110786.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1]
 gi|294852438|ref|ZP_06793111.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026]
 gi|62196144|gb|AAX74444.1| GyrA, DNA gyrase, A subunit [Brucella abortus bv. 1 str. 9-941]
 gi|82616041|emb|CAJ11077.1| DNA gyrase/topoisomerase IV, subunit A:DNA gyrase, subunit A:DNA
           gyrase C-terminal repeat, beta-propeller [Brucella
           melitensis biovar Abortus 2308]
 gi|225640965|gb|ACO00879.1| DNA gyrase, A subunit [Brucella melitensis ATCC 23457]
 gi|260095616|gb|EEW79493.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260668376|gb|EEX55316.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|260672314|gb|EEX59135.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674949|gb|EEX61770.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|260924534|gb|EEX91102.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1]
 gi|261294631|gb|EEX98127.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261296956|gb|EEY00453.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94]
 gi|261303204|gb|EEY06701.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|262552697|gb|EEZ08687.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1]
 gi|262766128|gb|EEZ11917.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094040|gb|EEZ17974.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660961|gb|EEZ31222.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|294821027|gb|EFG38026.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026]
 gi|326538827|gb|ADZ87042.1| DNA gyrase, A subunit [Brucella melitensis M5-90]
          Length = 922

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/851 (30%), Positives = 408/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM 
Sbjct: 1   MNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD 
Sbjct: 61  LAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  
Sbjct: 181 GMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES
Sbjct: 240 GRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++
Sbjct: 300 DREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P            
Sbjct: 359 AFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRW 418

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  
Sbjct: 419 PAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E      +L S  +  N +  E+  V++ F+       RRT   E+         + +I 
Sbjct: 479 EIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIA 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+I+          +      S +  KE D +     A+T   +L  S+
Sbjct: 531 REDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSS 590

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G  Y      L   + +  G+A+  ++ L   + I T               ++  +++
Sbjct: 591 RGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTR 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F +  +
Sbjct: 651 GTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDV 710

Query: 679 PEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KICEGL 709
                R   GVR  +  +G     +                                + +
Sbjct: 711 RVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDI 770

Query: 710 --------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                     T +  +   Y +  +     +  RGG G      
Sbjct: 771 VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDT 830

Query: 744 --FPRSGKFLS 752
                 GK ++
Sbjct: 831 SKTDEIGKLVA 841



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 795 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 854

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 855 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 907


>gi|23501975|ref|NP_698102.1| DNA gyrase subunit A [Brucella suis 1330]
 gi|261755064|ref|ZP_05998773.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
 gi|23347924|gb|AAN30017.1| DNA gyrase, A subunit [Brucella suis 1330]
 gi|261744817|gb|EEY32743.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
          Length = 922

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/851 (30%), Positives = 408/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM 
Sbjct: 1   MNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD 
Sbjct: 61  LAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  
Sbjct: 181 GMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES
Sbjct: 240 GRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++
Sbjct: 300 DREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P            
Sbjct: 359 AFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRW 418

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  
Sbjct: 419 PAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E      +L S  +  N +  E+  V++ F+       RRT   E+         + +I 
Sbjct: 479 EIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIA 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+I+          +      S +  KE D +     A+T   +L  S+
Sbjct: 531 REDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSS 590

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G  Y      L   + +  G+A+  ++ L   + I T               ++  +++
Sbjct: 591 RGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTR 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F +  +
Sbjct: 651 GTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDV 710

Query: 679 PEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KICEGL 709
                R   GVR  +  +G     +                                + +
Sbjct: 711 RVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDI 770

Query: 710 --------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                     T +  +   Y +  +     +  RGG G      
Sbjct: 771 VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDT 830

Query: 744 --FPRSGKFLS 752
                 GK ++
Sbjct: 831 SKTDEIGKLVA 841



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 795 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 854

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 855 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 907


>gi|15965313|ref|NP_385666.1| DNA gyrase subunit A [Sinorhizobium meliloti 1021]
 gi|15074493|emb|CAC46139.1| Probable DNA gyrase subunit A [Sinorhizobium meliloti 1021]
          Length = 931

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 245/856 (28%), Positives = 404/856 (47%), Gaps = 119/856 (13%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++  +T         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ M
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+G+D+   + K AR+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ + A  +L  +D+D VDFRD Y+    EPVV P+KFPNLL NG  
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L++ I GPDFPTG  ++  R  I +
Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGA-LILGRSGIRQ 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 240 AYETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      V+    R  + ++++  ++  + ++T F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + +++ R +V+ RR+ + ++    R  +L GL IA  NIDE+I +IR    P+       
Sbjct: 359 RAFVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLM 418

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL+LRL+ L  L   +I  EL+
Sbjct: 419 ERRWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E +    +L+S  +    +  E+  V++ F        RRT   E          +
Sbjct: 479 KIGEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTP-----RRTEIAE---GGPDMDDE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  ++ D +     A+T   +L
Sbjct: 531 DLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L   + I T               ++ 
Sbjct: 591 FFSSRGIVYKEKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 651 STTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFP 710

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  S  DG     +                               
Sbjct: 711 VADVRVFAGRNSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEE 770

Query: 706 -------------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                                          +  + + + +  +        RGG G   
Sbjct: 771 EEIVLVGEEVTNGGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRA 830

Query: 741 PKGFPRS---GKFLSS 753
                ++   G+ +++
Sbjct: 831 TDTS-KTAEIGELVAA 845



 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        +   + R GK        K +   ++     +   D + +V
Sbjct: 798 EQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDVICFKICEGLT 710
            +  +L+   ++ I   SR  KGV + S  KD  +  V      +G  
Sbjct: 858 SDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITEPDGDE 905


>gi|103487589|ref|YP_617150.1| DNA topoisomerase IV subunit A [Sphingopyxis alaskensis RB2256]
 gi|98977666|gb|ABF53817.1| DNA topoisomerase IV subunit A [Sphingopyxis alaskensis RB2256]
          Length = 777

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 370/751 (49%), Positives = 516/751 (68%), Gaps = 18/751 (2%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
                  AL +RYL YALSTI  R++PDLRDG KPVHRR++ AM  M LD    +KKSAR
Sbjct: 28  IDTPFDSALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRAMRLDPSQGYKKSAR 87

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEAR+T
Sbjct: 88  VVGDVIGKFHPHGDTAVYDAMVRLAQDFSLRYPLVDGQGNFGNIDGDNAAAYRYTEARLT 147

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           +VA  ++QG+DE  VDFR TYN ED EP + P  FPNLLANG SGIAVGMAT+IP HN  
Sbjct: 148 RVAVDLMQGLDEGTVDFRPTYNGEDEEPEIMPGLFPNLLANGASGIAVGMATNIPPHNAA 207

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AAL LIDNP+  +  LL+++ GPDFPTGGI+ E+ E+I ++Y  GRG FRVRAR+ 
Sbjct: 208 EVIDAALLLIDNPKAGLSDLLDHVKGPDFPTGGIVAENAETIAQAYESGRGSFRVRARFS 267

Query: 258 -------------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
                        +E++  G+W +V++EIPY V K +LIE++A+LI  +++P+LED+RDE
Sbjct: 268 IGKDADGKWEADGIEKLSGGTWQLVISEIPYGVAKGKLIEQVAQLIADRKLPILEDVRDE 327

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SAED+RIVL PK+R++D ++L +S++ L+D+E+RF LN+NVL   R P+VM L  +L EW
Sbjct: 328 SAEDLRIVLVPKSRNVDAEVLKDSLYRLTDLESRFALNLNVLDATRTPKVMGLKQLLTEW 387

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L H+  VL RR+  R+  ID R+E++ G +IA+LN+D II IIR ED+PKPVM++ F LT
Sbjct: 388 LQHQIIVLVRRAEHRIAKIDDRLELVAGYIIAFLNLDRIIEIIRTEDEPKPVMIAEFELT 447

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AILN+RLRSLRKLEE ++K E  +L AE+E++  L+ S  +Q  ++  ++  ++ 
Sbjct: 448 DRQAEAILNMRLRSLRKLEEMELKREQTDLTAEREELAKLVESPARQRTRLRKDLERLRG 507

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--SVDLSA 542
           ++   T LG RRTT  E +   +     AMIEKEP+TV++S RGWIR+ + H        
Sbjct: 508 VYGLDTSLGARRTTIAEAAPT-REIPLDAMIEKEPVTVILSKRGWIRAQRGHVAPDQWGE 566

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD L  A HA TTD++L+ ++DG+ +T+ A  L  GRG GE ++L++D++ +  I
Sbjct: 567 FKFKEGDELLFAAHAQTTDKLLIAASDGRFFTVGADKLPGGRGFGEPLRLMVDIDPDARI 626

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDH 660
           V      +  +LL+ S+ G+ FIV   ++ A TRKG+  + +     + +   +    D 
Sbjct: 627 VAMVPASAGGRLLLASTSGHGFIVNTDDVTAETRKGRNVVNLKPRAALVVARPIAPGDDS 686

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVG+NRKL++F + ++P M RG+GV LQ Y+DGG+SD + F + EGL+W         
Sbjct: 687 VAVVGDNRKLVVFPLAEVPVMGRGQGVMLQRYRDGGLSDAVSFVLAEGLSWAMGGDSGRT 746

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           R+E DL  W   RG  G + P GFPR+ +F 
Sbjct: 747 RTETDLAPWRVARGAAGRMPPTGFPRNNRFA 777


>gi|163843366|ref|YP_001627770.1| DNA gyrase subunit A [Brucella suis ATCC 23445]
 gi|163674089|gb|ABY38200.1| DNA gyrase, A subunit [Brucella suis ATCC 23445]
          Length = 922

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/851 (30%), Positives = 408/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM 
Sbjct: 1   MNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD 
Sbjct: 61  LAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  
Sbjct: 181 GMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES
Sbjct: 240 GRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++
Sbjct: 300 DREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P            
Sbjct: 359 AFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRW 418

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  
Sbjct: 419 PAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E      +L S  +  N +  E+  V++ F+       RRT   E+         + +I 
Sbjct: 479 EIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIA 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+I+          +      S +  KE D +     A+T   +L  S+
Sbjct: 531 REDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSS 590

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G  Y      L   + +  G+A+  ++ L   + I T               ++  +++
Sbjct: 591 RGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTR 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F +  +
Sbjct: 651 GTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDV 710

Query: 679 PEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KICEGL 709
                R   GVR  +  +G     +                                + +
Sbjct: 711 RVFAGRNSIGVRGINLAEGDKVISMAILHHVDVTPAERSAYLKRSIAERRAQGADDADDI 770

Query: 710 --------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                     T +  +   Y +  +     +  RGG G      
Sbjct: 771 VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDT 830

Query: 744 --FPRSGKFLS 752
                 GK ++
Sbjct: 831 SKTDEIGKLVA 841



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 795 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 854

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 855 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 907


>gi|161619050|ref|YP_001592937.1| DNA gyrase subunit A [Brucella canis ATCC 23365]
 gi|260566365|ref|ZP_05836835.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161335861|gb|ABX62166.1| DNA gyrase, A subunit [Brucella canis ATCC 23365]
 gi|260155883|gb|EEW90963.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 922

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/851 (30%), Positives = 407/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM 
Sbjct: 1   MNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD 
Sbjct: 61  LAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  
Sbjct: 181 GMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES
Sbjct: 240 GRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++
Sbjct: 300 DREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P            
Sbjct: 359 AFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRW 418

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  
Sbjct: 419 PAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E      +L S  +  N +  E+  V++ F+       RRT   E+         + +I 
Sbjct: 479 EIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIA 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+I+          +      S +  KE D +     A T   +L  S+
Sbjct: 531 REDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVASTHTPVLFFSS 590

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G  Y      L   + +  G+A+  ++ L   + I T               ++  +++
Sbjct: 591 RGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTR 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F +  +
Sbjct: 651 GTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDV 710

Query: 679 PEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KICEGL 709
                R   GVR  +  +G     +                                + +
Sbjct: 711 RVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDI 770

Query: 710 --------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                     T +  +   Y +  +     +  RGG G      
Sbjct: 771 VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDT 830

Query: 744 --FPRSGKFLS 752
                 GK ++
Sbjct: 831 SKTDEIGKLVA 841



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 795 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 854

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 855 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 907


>gi|93006548|ref|YP_580985.1| DNA gyrase, A subunit [Psychrobacter cryohalolentis K5]
 gi|92394226|gb|ABE75501.1| DNA gyrase subunit A [Psychrobacter cryohalolentis K5]
          Length = 928

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 246/832 (29%), Positives = 400/832 (48%), Gaps = 101/832 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E+V  +++   L++ YL YA+S I  RA+PD+RDGFKPVHRR+++AM  +  D+  A+
Sbjct: 1   MSESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYP++ GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++   +L  +D+D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EVRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  +NP+IS E+L+ +I GPDFPTGG I+  R  I+++YR G+G   V
Sbjct: 181 PHNLTEVINACLAYAENPQISAEELMSHISGPDFPTGG-IIYGRAGILDAYRTGKGRLHV 239

Query: 253 RARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E +      R    IV TE+PYQ  K++LIE+IAEL+  K+I  + +IRDES +
Sbjct: 240 RGRYIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGITEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   +     R    ++++ ++F+ + +E+ F +NM  L     P+++ L  ++  ++ H
Sbjct: 300 DGMRIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALD-NGQPKLLTLRQLIAAFVRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------- 414
           R+EV+ RR+ F +     R  +L+GL +A  NIDEIIA I+                   
Sbjct: 359 RQEVVTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNTWGS 418

Query: 415 -------------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                                + L+  QV+AIL+++L  L  LE
Sbjct: 419 GSVVAMLTAAGSQSVRPDFIEGEDPKAPFGLINNQESYRLSLEQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E  +LL E   ++S+L    +    I+ E+ E+++ F        RRT   +  
Sbjct: 479 QDKLTEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDE-----RRTDIID-- 531

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
            +     ++ +I ++ + + +S  G+          + K      SA   KE D +   +
Sbjct: 532 -SRMDFNREDLIPEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLI 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---- 609
              T   +L  +  G+ ++L    +   S    G  +  LI LN ++ + T         
Sbjct: 591 VTSTHATVLCFTDTGRVFSLRGFEVPIASRGARGRPLVNLIGLNADETVTTILPIPKIVE 650

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         +   ++ G    VE  +       G   + 
Sbjct: 651 ELSSKGETSADVTLDSDDLLDDSTQAEPPFVFFATANGTVKRVELKQFANIRSNGLIAVG 710

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   +K+       G   V +   + K + F+      M R  KGVR            +
Sbjct: 711 LEEGDKLVSARITNGSQEVMLFASSGKAIRFNETDARAMGRTAKGVRGMRLTADEFIKSL 770

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +    + +    + +           RGG G +  K   R+G  + +
Sbjct: 771 VVIEDDVREILIACENGFGKRTFIDEFNTQNRGGGGVIAIKTSTRNGALVRA 822



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 71/193 (36%), Gaps = 8/193 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +      +     S  L A+  +EGD L  A   + +  ++L ++ GKA      +  +
Sbjct: 689 TVKRVELKQFANIRSNGLIAVGLEEGDKLVSARITNGSQEVMLFASSGKAIRFNETDARA 748

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST-CKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                + ++ +  L  ++ I +  V +    ++L+    G        E     R G   
Sbjct: 749 MGRTAKGVRGMR-LTADEFIKSLVVIEDDVREILIACENGFGKRTFIDEFNTQNRGGGGV 807

Query: 642 LKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDG 695
           + +     +   ++     + D + ++ +   L+   ++ +    R  +GV L    KD 
Sbjct: 808 IAIKTSTRNGALVRATKVDSTDDIILISDKGTLVRTPVEHVASSGRNTQGVTLIRLSKDE 867

Query: 696 GISDVICFKICEG 708
            +  +   +  EG
Sbjct: 868 KLVAMARVEHEEG 880


>gi|295103720|emb|CBL01264.1| DNA gyrase subunit A [Faecalibacterium prausnitzii SL3/3]
          Length = 860

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 229/745 (30%), Positives = 378/745 (50%), Gaps = 18/745 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            ++  +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G D   A++KSA  VG
Sbjct: 19  DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVG 78

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V+G  HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  AAYRYTEARM+++A
Sbjct: 79  AVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMA 138

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  +++D +D+   ++E   EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ 
Sbjct: 139 VEMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVI 198

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +A ID+PEI +  L+E+I GPDFPT G I+  R  I  +Y  GRG   +R R  +EE
Sbjct: 199 DGCIAYIDDPEIDLPGLMEHIKGPDFPTAG-IIMGRSGIRAAYATGRGKITLRGRATIEE 257

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
              G   I++TEIPY V K+RLIE +A+L+  KRI  +  + DE+      ++    +  
Sbjct: 258 TKNGRTQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDA 317

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +  +++  ++  + ++    + M  +   +VP+V+ L  +L++++  + EV+ RR+ + +
Sbjct: 318 NAQVILNQLYQYTQLQDTVGVIMLAIDH-KVPKVLTLKQMLQKYVEFQDEVVRRRTQYDL 376

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED----KPKPVMVSRFSLTENQVDAILNLRL 436
           +    R  IL+GL  A   +DE+IA IR       + K  ++ +F   + Q DAI+ L+L
Sbjct: 377 KKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDDPQADAIVKLQL 436

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L  LE  +I+ EL +L A+ E  +++L    +    +  E+ ++K+ F        + 
Sbjct: 437 GRLAGLEILKIEEELASLHAKIEDWEAILADDARVLAIVKDELLDMKKRFGDERRTEIQS 496

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
            T         A  Q      E   +    +   ++ +     +S +  KE D ++    
Sbjct: 497 VTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQEMFV 556

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAFV-----YD 609
             T D +L ++  G+ + +    +  G    + +    L+ L   + +            
Sbjct: 557 GSTHDYVLFVTDRGRLFRIKGYTIAEGSRTSKGMNIVNLLQLAEGEKVTNMICQSKDAEQ 616

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENR 668
           S   + +V+ +G        +     + G   + ++  + +      +G D + V   N 
Sbjct: 617 SGGYVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNG 676

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           + + F+ +    M R G GVR     +G     +C    EG T +        R  +   
Sbjct: 677 QAIRFNEEDARPMGRNGHGVRAIRLAEGDEVVGVCIC-REGGTVLTVTENGKGRRSDIDT 735

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  RGG G           K  +
Sbjct: 736 YRITARGGKGIRNYDVS--RDKVAA 758



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 71/222 (31%), Gaps = 11/222 (4%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVI-SNRGWIRSLKSHSV------DLSALHFKEGDS 550
              E  +      Q    E+    V + + +G I+              L  +   EGD+
Sbjct: 597 QLAEGEKVTNMICQSKDAEQSGGYVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDA 656

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L         D +++ + +G+A      +      +G      I L    ++V   +   
Sbjct: 657 LAWTRLTSGHDMLIVATRNGQAIRFNEEDARPMGRNG-HGVRAIRLAEGDEVVGVCICRE 715

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTGDHVAVVGE-NR 668
              +L V+  G     +        R GK       S +K+  V  V      ++     
Sbjct: 716 GGTVLTVTENGKGRRSDIDTYRITARGGKGIRNYDVSRDKVAAVKIVDDVDDVLLSSQEG 775

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            ++    ++IP  SR G GVR+    +     V+     +  
Sbjct: 776 IIIRLHANEIPLQSRYGSGVRVMRLGENDKVMVLARTDHDDE 817


>gi|237784660|ref|YP_002905365.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757572|gb|ACR16822.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385]
          Length = 866

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 220/770 (28%), Positives = 375/770 (48%), Gaps = 21/770 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D+ +     + + V  + ++  ++  Y+ YA+S I  RA+P++RDG KPVHRRII+A
Sbjct: 1   MSDDSGNTGGNDLFDRVSPIDIQEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRIIYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     ++ KSAR V + +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+
Sbjct: 61  MYDNGYRPERSYVKSARPVADTMGHFHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTE R+T +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG+
Sbjct: 121 RGNDGPAAMRYTECRLTPLAMEMVRDIRENTVDFEPNYDGKTLEPTILPSRVPNLLMNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN+ E+ +A    +D+ +     ++E ++E + GPDFPT G ++   
Sbjct: 181 GGIAVGMATNIPPHNLTELAQAIFWCLDHYDADEATTLEAVMERVKGPDFPTAG-LIVGD 239

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I ++Y  GRG  ++R    +EE   G   IV+TE+PYQV    L+  IAE +   +I 
Sbjct: 240 KGIKDAYTTGRGSIKMRGVTSIEEER-GRTIIVITELPYQVNPDNLVSSIAEQVRDGKIA 298

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            +  I DE S      ++    R   P +++ +++  S ++T F  NM  +    VP+ +
Sbjct: 299 GISKIDDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVD-GVPRTL 357

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-- 413
            LD +L+ ++ H+ +V+ RR+  R+   ++R  IL+GL+ A   +DE+IA+IR    P  
Sbjct: 358 RLDQLLRLYVDHQIDVIVRRTQHRLDEAEKRAHILRGLVKALDMLDEVIALIRASQTPEI 417

Query: 414 -KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q DAIL +RLR L  LE  +I  EL  L      +  +L   ++Q 
Sbjct: 418 ARTGLMDLLDIDELQADAILRMRLRQLAALERQKIIDELKELELTIADLKDILARPERQR 477

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +  E+ E+   +           T         A                +     R+
Sbjct: 478 QIVRDELEEIVNNYGDDRRTQIIAATGDVTEEDLIARENVVATITSTGYAKRTKVDLYRN 537

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI 590
            K     +     K+ D ++      T D IL  +  G+ Y L A  L        G+ +
Sbjct: 538 QKRGGKGVRGAELKQDDVVRHFFVTSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHV 597

Query: 591 QLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L++    + I        Y+    L++ + +G     + ++  +    G   + ++  
Sbjct: 598 ANLLEFQPGEHIAQVIQLQTYEDAPYLVLATKQGRVKKSKLTDYDSARSGGLIAINLNEG 657

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICF 703
           + +      +  D + +V E  + + F+ D   +  M R   GV+   ++ G  + +   
Sbjct: 658 DSLIGAQLCSANDDLLLVSEEGQAMRFTADDDTLRPMGRATAGVKGMRFR-GEDALLALT 716

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + E    + +    Y +           RGG+G    K   + GK + +
Sbjct: 717 VVREDSYLMVATSGGYAKRTKMEEYPAKGRGGLGVATFKYNKKRGKLIGA 766



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 85/245 (34%), Gaps = 14/245 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADK--ATLQQAMIEKEPITVVISNRGWIRSLKS 535
            ++  +   +  T  G+      E    +     +Q    E  P  V+ + +G ++  K 
Sbjct: 579 RLKAYELPEASRTARGQHVANLLEFQPGEHIAQVIQLQTYEDAPYLVLATKQGRVKKSKL 638

Query: 536 HSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGE 588
              D      L A++  EGDSL  A      D +LL+S +G+A    A +      G   
Sbjct: 639 TDYDSARSGGLIAINLNEGDSLIGAQLCSANDDLLLVSEEGQAMRFTADDDTLRPMGRAT 698

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS--- 645
           A    +       ++   V      L+V +S G A   +  E  A  R G          
Sbjct: 699 AGVKGMRFRGEDALLALTVVREDSYLMVATSGGYAKRTKMEEYPAKGRGGLGVATFKYNK 758

Query: 646 SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
              K+   + V   D +  +  +  ++  ++  I   SR   GVRL     G     I  
Sbjct: 759 KRGKLIGALVVDQDDEIFCITTDGSVVRSNVKDIRPSSRQTMGVRLVHLDKGSELLAIDR 818

Query: 704 KICEG 708
            + + 
Sbjct: 819 NVEDE 823


>gi|260168805|ref|ZP_05755616.1| DNA gyrase subunit A [Brucella sp. F5/99]
 gi|261758289|ref|ZP_06001998.1| DNA gyrase subunit A [Brucella sp. F5/99]
 gi|261738273|gb|EEY26269.1| DNA gyrase subunit A [Brucella sp. F5/99]
          Length = 922

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/851 (30%), Positives = 408/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM 
Sbjct: 1   MNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD 
Sbjct: 61  LAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFPNLLVNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  
Sbjct: 181 GMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES
Sbjct: 240 GRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++
Sbjct: 300 DREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P            
Sbjct: 359 AFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRW 418

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  
Sbjct: 419 PAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E      +L S  +  N +  E+  V++ F+       RRT   E+         + +I 
Sbjct: 479 EIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIA 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+I+          +      S +  KE D +     A+T   +L  S+
Sbjct: 531 REDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSS 590

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G  Y      L   + +  G+A+  ++ L   + I T               ++  +++
Sbjct: 591 RGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTR 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F +  +
Sbjct: 651 GTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDV 710

Query: 679 PEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KICEGL 709
                R   GVR  +  +G     +                                + +
Sbjct: 711 RVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDI 770

Query: 710 --------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                     T +  +   Y +  +     +  RGG G      
Sbjct: 771 VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDT 830

Query: 744 --FPRSGKFLS 752
                 GK ++
Sbjct: 831 SKTDEIGKLVA 841



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 795 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 854

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 855 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 907


>gi|254693811|ref|ZP_05155639.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|261214092|ref|ZP_05928373.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|260915699|gb|EEX82560.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
          Length = 922

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/851 (30%), Positives = 408/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM 
Sbjct: 1   MNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD 
Sbjct: 61  LAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  
Sbjct: 181 GMATNIPPHNLGEVIDGCVALIDNPAIDLSELMELIPGPDFPTGGIIL-GRNGINSAYTT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES
Sbjct: 240 GRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++
Sbjct: 300 DREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P            
Sbjct: 359 AFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRW 418

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  
Sbjct: 419 PAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E      +L S  +  N +  E+  V++ F+       RRT   E+         + +I 
Sbjct: 479 EIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIA 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+I+          +      S +  KE D +     A+T   +L  S+
Sbjct: 531 REDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSS 590

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G  Y      L   + +  G+A+  ++ L   + I T               ++  +++
Sbjct: 591 RGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTR 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F +  +
Sbjct: 651 GTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDV 710

Query: 679 PEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KICEGL 709
                R   GVR  +  +G     +                                + +
Sbjct: 711 RVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDI 770

Query: 710 --------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                     T +  +   Y +  +     +  RGG G      
Sbjct: 771 VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDT 830

Query: 744 --FPRSGKFLS 752
                 GK ++
Sbjct: 831 SKTDEIGKLVA 841



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 795 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 854

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 855 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 907


>gi|261749234|ref|YP_003256919.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497326|gb|ACX83776.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 817

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 219/755 (29%), Positives = 391/755 (51%), Gaps = 20/755 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD RDG KPVHRR+++ M ++G+     +KK
Sbjct: 5   EKLIPINIEDEMKSSYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMYQLGIFSNNPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVY+++VR+AQ +  RYPLI GQGNFG++D D  AA RYTE 
Sbjct: 65  SARIVGEVLGKYHPHGDISVYETMVRMAQKWTLRYPLIDGQGNFGSLDADPPAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  + ++ VD +  +++   EP V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 125 RMKKMSEEMLLDIKKETVDMQLNFDDSIEEPTVLPTRIPNLLINGSSGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E  +A  A I+N +ISIE+++EYI  PDFPTGG I+   E + +++  GRG   +RA
Sbjct: 185 NLKETIKAIFAYIENDQISIEQIMEYIKAPDFPTGG-IIYGYEGVKKAFYTGRGRIVLRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE+ +G  CI+V EIPYQV K+ +I +  EL+   ++  +  IRDES  +   +++
Sbjct: 244 KVHLEEI-QGRQCIIVDEIPYQVNKAEMITRTVELMREGKMEGIYQIRDESDRNGLRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              ++ +P +L+ ++F  + ++T F +N   L     P  + +  +++ ++ HR++V+ R
Sbjct: 303 LLKQNTNPHILLNNLFKYTSLQTYFNVNNIALVK-GKPVQLNIKDLIQHFVDHRQDVIIR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAI 431
           R+ + ++    R+  L G L    ++D++I +I+           ++  F L+ENQ  +I
Sbjct: 362 RTKYELKKCQDRIHTLTGFLTILDHLDKMIELIKESKDHHEACNRLIKMFKLSENQSRSI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL++L  LE  +IK E + L+ +   + ++L     +   I  E+ ++++ +     
Sbjct: 422 LDMRLQNLTSLELKKIKKEYEELVKKIAYLKNVLIQHSIRMQIIKKELLDIQDKYQDKRR 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                              Q  +       +  ++    +      +       +E D  
Sbjct: 482 TQIDYLGNEVHIEDLIEDEQVVLTISHAGYIKRTSLSEYKRQGRGGIGNRGASARESDFF 541

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV-- 607
           K  L A     +L  +  GK + L    +  G    +  AIQ +I L  +  +    +  
Sbjct: 542 KHLLIATNHQYLLFFTEKGKCFWLRVYEIPEGSKISKGRAIQNMIHLQPDDKVNAYILTG 601

Query: 608 ------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                 Y     +++V+ KG              + G   + +   + +   +   G+ H
Sbjct: 602 DLTNKKYVQNHYVMMVTQKGIIKKTSLENYSRPRKDGINAIVIRKGDSLLEAILTKGNSH 661

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGLTWIDSAGR 717
           V +  ++ K++ FS  ++    R   GVR  +    +  +  +IC +  E    +  + +
Sbjct: 662 VFIAVKSGKIIRFSEKKVRATGRNSSGVRGINLSISEDTVIGMICVEGQEKGYLLVVSEK 721

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +  N     +  RGG G        ++G  +S
Sbjct: 722 GFGKRTNLKDYRITNRGGKGIKTINITQKTGSLIS 756



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/472 (12%), Positives = 138/472 (29%), Gaps = 21/472 (4%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR- 294
           ++ I       +     R ++ +++       +    +       ++IE I E       
Sbjct: 345 KDLIQHFVDHRQDVIIRRTKYELKKCQDRIHTLTGF-LTILDHLDKMIELIKESKDHHEA 403

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
              L  +   S    R +L  + ++     L          E    +         + Q 
Sbjct: 404 CNRLIKMFKLSENQSRSILDMRLQN-----LTSLELKKIKKEYEELVKKIAYLKNVLIQH 458

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
                I+K+ L   ++    +   ++  +   V I   +    + +    A         
Sbjct: 459 SIRMQIIKKELLDIQDKYQDKRRTQIDYLGNEVHIEDLIEDEQVVLTISHAGYIKRTSLS 518

Query: 415 PVMVSRFSLTENQVDAILNLRL-RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                      N+  +       + L     +Q                 L      + +
Sbjct: 519 EYKRQGRGGIGNRGASARESDFFKHLLIATNHQYLLFFTEKGK----CFWLRVYEIPEGS 574

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           +I+        I  +  D         +++          M+  +   +  ++       
Sbjct: 575 KISKGRAIQNMIHLQPDDKVNAYILTGDLTNKKYVQNHYVMMVTQKGIIKKTSLENYSRP 634

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +     ++A+  ++GDSL  A+       + +    GK        + +   +   ++ +
Sbjct: 635 RKD--GINAIVIRKGDSLLEAILTKGNSHVFIAVKSGKIIRFSEKKVRATGRNSSGVRGI 692

Query: 594 IDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEE 648
                   ++     +      LLVVS KG        +     R GK    ++      
Sbjct: 693 NLSISEDTVIGMICVEGQEKGYLLVVSEKGFGKRTNLKDYRITNRGGKGIKTINITQKTG 752

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +  +  VT  D + ++ ++  ++  S+  I  M R  +GVRL + K+    
Sbjct: 753 SLISIKHVTNQDDLMIIKKSGIIIRISVSDIRVMGRDTQGVRLINLKEKDEI 804



 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 73/279 (26%), Gaps = 17/279 (6%)

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
                 +   +     +L + EI    +         +      +     I       L 
Sbjct: 548 TNHQYLLFFTEKGKCFWLRVYEIPEGSKISKGRAIQNMIHLQPDDKVNAYI-------LT 600

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                +   +   ++   +K      S +         I  +      S           
Sbjct: 601 GDLTNKKYVQNHYVMMVTQKGIIKKTSLENYSRPRKDGINAIVIRKGDSLLEAILTKGNS 660

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
            V  A K+       EK                 S    ++    ++     I +     
Sbjct: 661 HVFIAVKSGKIIRFSEK--------KVRATGRNSSGVRGINLSISEDTVIGMICVEGQEK 712

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L++S  G        +       G+ I+ +        +++     +   L+++   
Sbjct: 713 GYLLVVSEKGFGKRTNLKDYRITNRGGKGIKTINITQKTGSLISIKHVTNQDDLMIIKKS 772

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           G    +  S+I    R   G   + +  ++++  V KV+
Sbjct: 773 GIIIRISVSDIRVMGRDTQGVRLINLKEKDEIADVEKVS 811


>gi|261752404|ref|ZP_05996113.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
 gi|261742157|gb|EEY30083.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
          Length = 922

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/851 (30%), Positives = 408/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM 
Sbjct: 1   MNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD 
Sbjct: 61  LAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  
Sbjct: 181 GMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES
Sbjct: 240 GRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++
Sbjct: 300 DREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P            
Sbjct: 359 AFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRW 418

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  
Sbjct: 419 PAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E      +L S  +  N +  E+  V++ F+       RRT   E+         + +I 
Sbjct: 479 EIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIA 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+I+          +      S +  KE D +     A+T   +L  S+
Sbjct: 531 REDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSS 590

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G  Y      L   + +  G+A+  ++ L   + I T               ++  +++
Sbjct: 591 RGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTR 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F +  +
Sbjct: 651 GTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDV 710

Query: 679 PEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KICEGL 709
                R   GVR  +  +G     +                                + +
Sbjct: 711 RVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDI 770

Query: 710 --------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                     T +  +   Y +  +     +  RGG G      
Sbjct: 771 VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDT 830

Query: 744 --FPRSGKFLS 752
                 GK ++
Sbjct: 831 SKTDEIGKLVA 841



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 795 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 854

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 855 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 907


>gi|71066098|ref|YP_264825.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4]
 gi|71039083|gb|AAZ19391.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4]
          Length = 930

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 245/834 (29%), Positives = 404/834 (48%), Gaps = 103/834 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E+V  +++   L++ YL YA+S I  RA+PD+RDGFKPVHRR+++AM  +  D+  A+
Sbjct: 1   MSESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYP++ GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++   +L  +D+D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EVRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  +NP+IS E+L+ +I+GPDFPTGG I+  R  I+++YR G+G   V
Sbjct: 181 PHNLTEVINACLAYAENPQISAEELMSHILGPDFPTGG-IIYGRAGILDAYRTGKGRLHV 239

Query: 253 RARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E +      R    IV TE+PYQ  K++LIE+IAEL+  K+I  + +IRDES +
Sbjct: 240 RGRYIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGISEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   +     R    ++++ ++F+ + +E+ F +NM  L     P+++ L  ++  ++ H
Sbjct: 300 DGMRIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALD-NGQPKLLTLRQLIAAFVRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------- 414
           R+EV+ RR+ F +     R  +L+GL +A  NIDEIIA I+                   
Sbjct: 359 RQEVVTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNIWGS 418

Query: 415 -------------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                              + + L+  QV+AIL+++L  L  LE
Sbjct: 419 GSVVAMLTAAGSQSVRPDFIEGEDPKAPFGLIDNQASYRLSLEQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E  +LL E   ++S+L    +    I+ E+ E+++ F        RRT   +  
Sbjct: 479 QDKLTEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDE-----RRTDIID-- 531

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
            +     ++ +I ++ + + +S  G+          + K      SA   KE D +   +
Sbjct: 532 -SRMDFNREDLIPEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLV 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---- 609
              T   +L  +  G+ ++L    +   S    G  +  LI L+ ++ + T         
Sbjct: 591 VTSTHATVLCFTDTGRVFSLRGFEVPIASRGARGRPLVNLIGLHADETVTTILPIPKIVE 650

Query: 610 ----------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                                           +   ++ G    VE  +       G   
Sbjct: 651 ELSVKGETSSTDALVDSDNDLLDDSTQAEPPFVFFATANGTVKRVELKQFANIRSNGLIA 710

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           + +   +K+       G   V +   + K + F+ +    M R  KGVR           
Sbjct: 711 VGLEEGDKLVSARITNGSQEVMLFASSGKAIRFNENDARAMGRTAKGVRGMRLTADEFIK 770

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     +    + +    + +           RGG G +  K   R+G+ + +
Sbjct: 771 SLVVIEDDVREILIACENGFGKRTFIDEFNTQNRGGGGVIAIKTSARNGELVRA 824



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 71/194 (36%), Gaps = 8/194 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +      +     S  L A+  +EGD L  A   + +  ++L ++ GKA      +  +
Sbjct: 691 TVKRVELKQFANIRSNGLIAVGLEEGDKLVSARITNGSQEVMLFASSGKAIRFNENDARA 750

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST-CKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                + ++ +  L  ++ I +  V +    ++L+    G        E     R G   
Sbjct: 751 MGRTAKGVRGMR-LTADEFIKSLVVIEDDVREILIACENGFGKRTFIDEFNTQNRGGGGV 809

Query: 642 LKVSS---EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDG 695
           + + +     ++    KV   D + ++ +   L+   +  +    R  +GV L    KD 
Sbjct: 810 IAIKTSARNGELVRATKVEPEDDIILISDKGTLVRTPVQHVASSGRNTQGVTLIRLSKDE 869

Query: 696 GISDVICFKICEGL 709
            +  +   +  EG 
Sbjct: 870 KLVAMARVEHEEGD 883


>gi|319638198|ref|ZP_07992961.1| DNA gyrase subunit A [Neisseria mucosa C102]
 gi|317400471|gb|EFV81129.1| DNA gyrase subunit A [Neisseria mucosa C102]
          Length = 923

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/852 (28%), Positives = 402/852 (47%), Gaps = 116/852 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ +A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D PE  I++L+  I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI EL+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L     P+++ L  
Sbjct: 300 DLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLSRPWRSSLVEDMLSRTDLDLQMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I  E  NL+++      +L+  ++    I  E+ ++K  F        RR+   
Sbjct: 479 GLDQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +  ++ +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEDDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS-------------------------------IDQIPEMSRGKGVR------- 688
             K + F+                                + +P   +  GVR       
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENALPS-GK-HGVRPSGRGSG 768

Query: 689 ---LQSYK-DGGISDVICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                    DG I  +I F        L  + +    Y +           +GG G++  
Sbjct: 769 GLRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 742 KGFPRSGKFLSS 753
               R+G  +++
Sbjct: 829 NTGERNGDLVAA 840



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 10/113 (8%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +   +     V+  D + ++     L+   ++QI E  R   GVRL +  +G 
Sbjct: 833 RNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEGE 885



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 20/89 (22%), Gaps = 5/89 (5%)

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWIDSAG 716
            V     N       I      ++G +G    +   ++G +         + L  I S  
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVSETDDLMLITSG- 855

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                           R   G  +     
Sbjct: 856 -GVLIRTKVEQIRETGRAAAGVRLINLDE 883



 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVSETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
                +  +I    R   G   + +   E +  
Sbjct: 857 VLIRTKVEQIRETGRAAAGVRLINLDEGETLVS 889


>gi|307317170|ref|ZP_07596611.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83]
 gi|306897258|gb|EFN28003.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83]
          Length = 931

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 245/856 (28%), Positives = 404/856 (47%), Gaps = 119/856 (13%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++  +T         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ M
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+G+D+   + K AR+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ + A  +L  +D+D VDFRD Y+    EPVV P+KFPNLL NG  
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L++ I GPDFPTG  ++  R  I +
Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGA-LILGRSGIRQ 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 240 AYETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      V+    R  + ++++  ++  + ++T F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + +++ R +V+ RR+ + ++    R  +L GL IA  NIDE+I +IR    P+       
Sbjct: 359 RAFVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLM 418

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL+LRL+ L  L   +I  EL+
Sbjct: 419 ERRWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E +    +L+S  +    +  E+  V++ F        RRT   E          +
Sbjct: 479 KIGEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTP-----RRTEIAE---GGPDMDDE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  ++ D +     A+T   +L
Sbjct: 531 DLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L   + I T               ++ 
Sbjct: 591 FFSSRGIVYKEKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 651 STTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFP 710

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  S  DG     +                               
Sbjct: 711 VADVRVFAGRNSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEE 770

Query: 706 -------------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                                          +  + + + +  +        RGG G   
Sbjct: 771 EEIVLVGEEVTNGGELTNERYEELKAREQFILTVSVKGFGKRSSSYDFRTSGRGGKGIRA 830

Query: 741 PKGFPRS---GKFLSS 753
                ++   G+ +++
Sbjct: 831 TDTS-KTAEIGELVAA 845



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        +   + R GK        K +   ++     +   D + +V
Sbjct: 798 EQFILTVSVKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDVICFKICEGLT 710
            +  +L+   ++ I   SR  KGV + S  KD  +  V      +G  
Sbjct: 858 SDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITEPDGDE 905


>gi|26553456|ref|NP_757390.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2]
 gi|26453462|dbj|BAC43794.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2]
          Length = 837

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 237/770 (30%), Positives = 395/770 (51%), Gaps = 37/770 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L +  V    +   +E  ++ YA+S I  RAIPD+RDGFKPVHRR+++A   MG+   
Sbjct: 12  ESLNKTKVTDKPISKEVENSFMDYAMSVIVSRAIPDVRDGFKPVHRRVLYAAYNMGMTHD 71

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSAR+VGEVIGK HPHGD + Y+++VR+AQ F  RY L+ G GNFG+IDGDSAAA 
Sbjct: 72  KPYKKSARLVGEVIGKYHPHGDTAAYETMVRMAQDFSMRYMLVDGHGNFGSIDGDSAAAM 131

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++++  +L+ ++++ VDF + Y+  + EP V P+ FPN+LANG+SGIAVGMAT
Sbjct: 132 RYTEARLSKISSEMLKNIEKETVDFSENYDGSEMEPTVLPALFPNMLANGSSGIAVGMAT 191

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +A L L  N + S+ ++ + + GPDFPT   IV   + I   +  GRG 
Sbjct: 192 NIPPHNLSEIIDAVLLLTKNKDASVNEIKQVLKGPDFPTKAEIV-GTDGINSYFETGRGS 250

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R++  +         I++ EIPY V KS LI+KI +L+  + I  + D+RDES+ + 
Sbjct: 251 ITIRSKAEIIHSRDSKSQIIIKEIPYMVNKSNLIDKIVDLVKTEAIEGIADLRDESSREG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +   P++L+  +F ++ +++ F +NM  L   + P+++ +  +L+E+L H+ 
Sbjct: 311 IRIVIEVKKDTVPEVLLNKLFKMTPLQSNFSVNMLALVD-KEPKLLNIKEVLQEYLKHQV 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
            VL R++ F ++  + R  IL+GL IA  NID +I IIR              ++ LT+ 
Sbjct: 370 NVLVRKTKFELKKAEEREHILEGLFIAVTNIDAVIKIIRESKDNDEAEKQLITKYKLTKI 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLRSL  LE  +I+ EL  + A  +++  +L S  +Q + I+ E+  +K  +
Sbjct: 430 QAKAILDMRLRSLSNLERLKIEQELKEVKALIQELSGILKSSDKQMDIISKELINLKNTY 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   R+T          +   + +I  E I +  S   +++          +   V
Sbjct: 490 GDE-----RKTEIL--YGVSASIDDEDLIPVENIVISRSANNYLKRISIETYKIQRRGGV 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  +     D +   +   T   IL  +  GK Y + A  +  G    +      L+++
Sbjct: 543 GVKGVSTYNDDEVDDIITTTTHTDILFFTDFGKVYRIRAHEIPPGSRQSKGVPALNLMNI 602

Query: 597 NHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             N+ I+     +      L + ++KG       SE  +    GK  + +   +++    
Sbjct: 603 EKNEKILVMLPVEDYSKGFLFLATTKGIVKRTSLSEYNSIKSNGKRAITLREGDQLLSAF 662

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-----------DGGISDVI 701
              G D + +   N  L  F+   +  M R   GV+  + +           D  I+ V 
Sbjct: 663 LTRGKDEIYLGASNGLLTRFNEQDVRVMGRTASGVKGINIEVKAEGRNKKKIDTSINVVG 722

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 G   +    +   +        L +RG  G +  K   ++GK +
Sbjct: 723 ASSSLSGDLILSIGEKGLGKLSEAENYRLTRRGSKGVVTLKQNDKTGKLI 772



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 6/125 (4%)

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
           +    ++ + ++V A    S   +L +  KG   + E        R  K  + +   +K 
Sbjct: 709 RNKKKIDTSINVVGASSSLSGDLILSIGEKGLGKLSEAENYRLTRRGSKGVVTLKQNDKT 768

Query: 650 --MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFK 704
             +     V GD  + +V  + K++   +  +  + R   GV L        I     +K
Sbjct: 769 GKLIFSSAVKGDEEILIVTSSGKIIRQELKNLRVIGRSTSGVTLVKLQPKEKIISAAVYK 828

Query: 705 ICEGL 709
             E  
Sbjct: 829 KEEDE 833


>gi|261222265|ref|ZP_05936546.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260920849|gb|EEX87502.1| conserved hypothetical protein [Brucella ceti B1/94]
          Length = 922

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 260/851 (30%), Positives = 407/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM 
Sbjct: 1   MNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD 
Sbjct: 61  LAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+I  HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  
Sbjct: 181 GMATNILPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES
Sbjct: 240 GRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++
Sbjct: 300 DREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P            
Sbjct: 359 AFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRW 418

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  
Sbjct: 419 PAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E      +L S  +  N +  E+  V++ F+       RRT   E+         + +I 
Sbjct: 479 EIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIA 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+I+          +      S +  KE D +     A+T   +L  S+
Sbjct: 531 REDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSS 590

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G  Y      L   + +  G+A+  ++ L   + I T               ++  +++
Sbjct: 591 RGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTR 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F +  +
Sbjct: 651 GTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDV 710

Query: 679 PEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KICEGL 709
                R   GVR  +  +G     +                                + +
Sbjct: 711 RVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDI 770

Query: 710 --------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                     T +  +   Y +  +     +  RGG G      
Sbjct: 771 VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDT 830

Query: 744 --FPRSGKFLS 752
                 GK ++
Sbjct: 831 SKTDEIGKLVA 841



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 795 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 854

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 855 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 907


>gi|284165544|ref|YP_003403823.1| DNA gyrase subunit alpha [Haloterrigena turkmenica DSM 5511]
 gi|284015199|gb|ADB61150.1| DNA gyrase, A subunit [Haloterrigena turkmenica DSM 5511]
          Length = 838

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 251/771 (32%), Positives = 411/771 (53%), Gaps = 31/771 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D + +   +    V+ V +   +E+ Y+ YA+S I  RA+P + DG KPVHRRI++A
Sbjct: 1   MSSD-VPDPTDVQARAVENVRIEDEMEQSYIDYAMSVIAGRALPRVEDGLKPVHRRILYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMG+  G++ +KS+ IVGE +G  HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG+
Sbjct: 60  MHEMGVSSGSSHRKSSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM+ ++E +L  +D+D VDF   Y++   EP V P+ FPNLL NG+
Sbjct: 120 MDGDPAAAQRYTEARMSSISEELLSDIDKDTVDFSANYDDRLQEPDVLPAAFPNLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGM+T+IP HN+ E+ +A + LID+P+ ++E L++++ GPDFPTG  IV  R++I 
Sbjct: 180 SGIAVGMSTNIPPHNLGEVIDATIELIDDPDATVEDLMDHVKGPDFPTGANIV-GRDAIY 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y+ GRG  RVRA + VEE   G   IVVTE+P+Q  K+RL+E+IAE +    I  + D
Sbjct: 239 SAYKTGRGRIRVRAEFEVEEWKSGRERIVVTELPFQANKARLVERIAEDVNEGEIEGISD 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   ++    R  + +++  +  + + +E  F +    L     P+V+ L   
Sbjct: 299 LRDESDRDGVRIVIELKRGANTEVVK-NRLLENHLERTFGVINLALVD-GQPRVLSLKET 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVM 417
           L+E++AHRREV+ RRS + ++  + R  IL+G L A  N D+++ +IRN +     K  +
Sbjct: 357 LEEYVAHRREVVRRRSEYDLEEAEDRAHILEGRLTAVENADDVVELIRNSETRSDAKENL 416

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              +  +++Q D I+ ++L SL  +E  +I+ E + + AE E+++++L S ++  + I  
Sbjct: 417 QDAYDFSQDQADHIVRMQLGSLTSMETTEIEEEYEEVQAEIERLNAILESEEELLSVIKD 476

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+R +KE +        RRT+  E          + +I +E + VV++   +++ +    
Sbjct: 477 ELRGIKEEYGDE-----RRTSIIE---DQGTVTHEDLIPEEEVFVVMTEDDYVKRMPIDQ 528

Query: 538 VDLSALH--------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HG 587
            D              KEGD +     A+T D +L  +  GK Y L    +        G
Sbjct: 529 FDPQGRGGKGIIGADVKEGDRVSTVFRANTHDYLLCFTNQGKVYQLKTYEIPEMGRTARG 588

Query: 588 EAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++   ++DL+  +DI      D       + + +  G        E       G     +
Sbjct: 589 KSAVNILDLDPGEDITAIVDTDAFGDGEFVTMATHHGYVKRTGGEEFDNIRSTGIIAADL 648

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVI 701
              +++  V    G   + +  E    + F  D++  M R  +GV     +D   ++ ++
Sbjct: 649 EEGDELVDVEVTDGSQDLVIATEGGMTIRFDEDEVRAMGRNARGVNGIKLQDDDAVAGLV 708

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +G   +      Y +           R G G +  K   R+G   +
Sbjct: 709 ATDEADGQALLTVTRNGYGKRTRLSEYRTQSRYGKGLIDIKTGDRNGPVTA 759



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  + A   +EGD L        +  +++ +  G         + +   +   +   
Sbjct: 637 NIRSTGIIAADLEEGDELVDVEVTDGSQDLVIATEGGMTIRFDEDEVRAMGRNARGV-NG 695

Query: 594 IDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-- 649
           I L  +  +      D      LL V+  G       SE    +R GK  + + + ++  
Sbjct: 696 IKLQDDDAVAGLVATDEADGQALLTVTRNGYGKRTRLSEYRTQSRYGKGLIDIKTGDRNG 755

Query: 650 -MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
            +  V  V  D  + ++ E+ +++   +D+I  + R   GV +   +DG     +
Sbjct: 756 PVTAVKAVDDDDQLVMMSEDGQIVRTRVDEISTVGRNTMGVIVMDVEDGDAVASV 810


>gi|67923218|ref|ZP_00516705.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501]
 gi|67854949|gb|EAM50221.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501]
          Length = 859

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/787 (30%), Positives = 383/787 (48%), Gaps = 64/787 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T+ ++ +    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +    +L+ ++ D VDF D ++    EP+V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI NPE++ ++L++ I GPDFPTGG I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELIDGTIALIHNPELTEKELIKIIPGPDFPTGGQIL-GRSGIHDAYLSGRGS 240

Query: 250 FRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I++T++PYQ  K+ LIE+IA+L+  KRI  + DIRDES
Sbjct: 241 ITMRGVAEIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNDKRIDGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +I+  + ++  F  NM  L     PQ++ +   L+ +L
Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALV-NGEPQLLTIKDFLQVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  N+D +I +IR              +F 
Sbjct: 360 EFRVETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRGAADTTTAKQELVEQFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q DAIL ++LR L  LE  +I +E + L  +   +  +L   ++    I  E+ ++
Sbjct: 420 LSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLKDILARRERIEAIIEEELAQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K I +       RRT        D   +   +I  E   ++++ +G+I+ +   +     
Sbjct: 480 KTIHATP-----RRTEIV---HDDGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFEAQQ 531

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +A   KE D ++  L     D++L  S  G  Y + A  +   S    G  I  
Sbjct: 532 RATRGKAAAKIKEDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIQAASRTARGIPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +  ++ I +      +     L++++  G       S        G   + +   ++
Sbjct: 592 MLPIPKDEKITSIVAVSEFSDDVFLVMLTRNGYIKKTALSAFSNIRTNGLIAISLGDGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           ++ V      D + +   N   + F  D  Q+  + R  +GV+    K G     +    
Sbjct: 652 LRWVRLTREEDSIILGTSNGMSIHFQADNQQLRPLGRATRGVKAMKLKKGDELISMDILT 711

Query: 706 CE-----------------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
            +                             G   +      Y +        L KR G+
Sbjct: 712 AQVTAGMAYTEEDEEILDNENEELTEEETTAGPWILAITNGGYGKRVPISQFRLQKRAGM 771

Query: 737 GSLVPKG 743
           G    K 
Sbjct: 772 GVRAIKF 778



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLVVKVT-GDHVAVVGENRK 669
           +L +++ G    V  S+     R G     +K  S+ + +  +  V   D + +V     
Sbjct: 746 ILAITNGGYGKRVPISQFRLQKRAGMGVRAIKFKSDSDCLASLRVVNAEDELMIVSNRGI 805

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
           ++  ++D I   SR   GVR+Q          +     
Sbjct: 806 IIRQAVDAISMQSRAATGVRVQRLDSEDAIAAVALVPP 843


>gi|307307939|ref|ZP_07587664.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C]
 gi|306901555|gb|EFN32158.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C]
          Length = 931

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 245/856 (28%), Positives = 404/856 (47%), Gaps = 119/856 (13%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++  +T         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ M
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+G+D+   + K AR+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNTAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ + A  +L  +D+D VDFRD Y+    EPVV P+KFPNLL NG  
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L++ I GPDFPTG  ++  R  I +
Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGA-LILGRSGIRQ 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 240 AYETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      V+    R  + ++++  ++  + ++T F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + +++ R +V+ RR+ + ++    R  +L GL IA  NIDE+I +IR    P+       
Sbjct: 359 RAFVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLM 418

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL+LRL+ L  L   +I  EL+
Sbjct: 419 ERRWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E +    +L+S  +    +  E+  V++ F        RRT   E          +
Sbjct: 479 KIGEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTP-----RRTEIAE---GGPDMDDE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  ++ D +     A+T   +L
Sbjct: 531 DLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L   + +  G+A+  ++ L   + I T               ++ 
Sbjct: 591 FFSSRGIVYKEKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 651 STTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFP 710

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  S  DG     +                               
Sbjct: 711 VADVRVFAGRNSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEE 770

Query: 706 -------------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                                          +  + + + +  +        RGG G   
Sbjct: 771 EEIVLVGEEVTNGGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRA 830

Query: 741 PKGFPRS---GKFLSS 753
                ++   G+ +++
Sbjct: 831 TDTS-KTAEIGELVAA 845



 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        +   + R GK        K +   ++     +   D + +V
Sbjct: 798 EQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDVICFKICEGLT 710
            +  +L+   ++ I   SR  KGV + S  KD  +  V      +G  
Sbjct: 858 SDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITEPDGDE 905


>gi|302535566|ref|ZP_07287908.1| DNA gyrase subunit A [Streptomyces sp. C]
 gi|302444461|gb|EFL16277.1| DNA gyrase subunit A [Streptomyces sp. C]
          Length = 874

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 233/783 (29%), Positives = 390/783 (49%), Gaps = 39/783 (4%)

Query: 6   ISNSNTLVEE---------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           +++  T   E          ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR
Sbjct: 1   MADETTPTAEGSAEEQPVLRIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   G
Sbjct: 61  VLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNG 120

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+   D AAA RYTE ++  +A  +L+ +DE+ VDF+D Y+  + EP V P++FPNLL
Sbjct: 121 NFGSPGNDPAAAMRYTECKLMPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLL 180

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGII 232
            NG++GIAVGMAT+IP HN++E+   A   +++PE S E+L +     I GPDFPTG  +
Sbjct: 181 VNGSAGIAVGMATNIPPHNLREVAAGAQWALEHPEASHEELQDALIERIKGPDFPTGA-L 239

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
           V  R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+  
Sbjct: 240 VVGRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKD 298

Query: 293 KRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            +I  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L    V
Sbjct: 299 GKIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GV 357

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+ + +D  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +
Sbjct: 358 PRTLSIDAFIRHWVQHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSN 417

Query: 412 KP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                +  ++    + E Q +AIL ++LR L  LE  +I +E D L A+  + +++L S 
Sbjct: 418 TVEIAREGLMGLLEIDEIQANAILEMQLRRLAALERQKIVAEHDELQAKINEYNAILASP 477

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++Q + ++ E+  + E +                     A     +       V  +   
Sbjct: 478 EKQRSIVSEELAAIVEKYGDDRRSKLVPFDGDMSIEDLIAEEDIVVTITHGGYVKRTKTE 537

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGH 586
             RS K     +     K+ D +     + T   +L  +  G+ Y   A  L        
Sbjct: 538 DYRSQKRGGKGVRGTKLKQDDLVDHFFVSTTHHWLLFFTNKGRVYRSKAYELPDAGRDAR 597

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ +  L+    ++ I        Y++   L++ +  G        +  +    G   + 
Sbjct: 598 GQHVANLLAFQPDEKIAQVLAIRDYEAAPYLILATKGGLVKKTALKDYDSPRSGGVIAIN 657

Query: 644 VSSE---------EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQ 690
           +            +++     V+  D + ++ +  + + F+     +  M R   GV+  
Sbjct: 658 LRETGADGADGTADELIGAELVSAEDDLLLISKKAQSIRFTATDEALRPMGRATSGVKGM 717

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S+++G     +   +  G     +    Y +        +  RGG+G    K     G  
Sbjct: 718 SFREGDELLSMSV-VRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSL 776

Query: 751 LSS 753
           + +
Sbjct: 777 VGA 779


>gi|209545463|ref|YP_002277692.1| DNA topoisomerase IV subunit A [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533140|gb|ACI53077.1| DNA topoisomerase IV, A subunit [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 743

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 370/729 (50%), Positives = 519/729 (71%), Gaps = 5/729 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
              +++   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR+I+AM ++ LD  + F
Sbjct: 5   TSGHIEETRLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMIYAMRQLRLDPTSGF 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG+IDGD+AAA RYT
Sbjct: 65  KKCARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARMT+VA  +L+G+D+D+VDFR TY+ E+ EPVV P+ FPNLLANG +GIAVGMATSIP
Sbjct: 125 EARMTEVARALLEGIDDDSVDFRPTYDGEEQEPVVLPAAFPNLLANGAAGIAVGMATSIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HNV EIC AA+ LI +P+ ++  L+E + GPDFPTGG+IVE R +++++Y  GRG  R+
Sbjct: 185 PHNVGEICSAAIRLIRSPDATVADLMEDMPGPDFPTGGLIVEDRATLLQAYETGRGSMRI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RARW VE+   G+W +VVTEIPYQVQKSRLIE+IA+L+  K++PLL DIRDES  D+R+V
Sbjct: 245 RARWSVEQGRFGTWQVVVTEIPYQVQKSRLIEQIADLMEQKKLPLLGDIRDESTTDIRLV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L PK+R ++P++LME++F  + +E+RF LNMNVL   RVP V  L  +L  WL HR +VL
Sbjct: 305 LEPKSRGVEPEVLMETLFRATALESRFALNMNVLGADRVPGVRSLREVLLAWLDHRHDVL 364

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RRS  R+QA+DRR+EIL G L  YLN+DE+I IIR ED  K  +++ FSLTE Q ++IL
Sbjct: 365 QRRSRHRLQAVDRRLEILDGFLAVYLNLDEVIRIIREEDDAKAGLMATFSLTELQAESIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           N+RLRSLR+LEE +I+ E   L AE+  + +LL+S   +W +I  E++ +++ F  +  L
Sbjct: 425 NMRLRSLRRLEELEIRKEHAALTAERGDLTALLDSEPLRWKKITEEVKAIRKAFG-AGAL 483

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           G RR+      RA + +  +A +E+EP+T+++S +GW+++LK H +D +   FKEGD  +
Sbjct: 484 GTRRSELAAPPRAIELSAIEA-VEREPLTLILSAKGWVKTLKGHGIDPTTQKFKEGDGFR 542

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           +A+   +TDR+ + +TDG+A+TL A +L  GRG G+ I+LLI+L++++D+V  F      
Sbjct: 543 LAVECQSTDRLCVFATDGRAFTLRAADLPRGRGDGQPIRLLIELSNDEDLVAVFPVREGT 602

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           + L+ SS G   ++ + +++A  R GK  L +   E  ++ + V GDHV V+G+NR++L+
Sbjct: 603 RHLLASSAGRGLVIRDEDLVAEKRTGKQVLNLKDAESARICLPVEGDHVVVLGQNRRMLV 662

Query: 673 FSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           F + Q+PEM+RG GV LQ YK+GG+ D       +G  W D A     R   D   +LGK
Sbjct: 663 FPVAQLPEMARGLGVALQKYKEGGLMDACLLSSTDGAAWPDPA---RIRPFADFRDYLGK 719

Query: 733 RGGVGSLVP 741
           R  VG   P
Sbjct: 720 RADVGRPAP 728


>gi|325678531|ref|ZP_08158142.1| DNA gyrase, A subunit [Ruminococcus albus 8]
 gi|324109750|gb|EGC03955.1| DNA gyrase, A subunit [Ruminococcus albus 8]
          Length = 838

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 230/751 (30%), Positives = 390/751 (51%), Gaps = 18/751 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E N+    +   ++E +L Y+++ I  RA+PD+RDG KPVHRRI++ M E GL    A
Sbjct: 1   MDEYNLIDQDVEHIMKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K A  VG V+G+ HPHGD SVYD+LVRLAQ F  RYPL+ G GNFG++DGD  AAYRY
Sbjct: 61  YRKCADTVGSVLGRYHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM +++  +L  + +D VDF+  Y++   EPVV PS+FPN+L NG+ GIAVGMAT+I
Sbjct: 121 TEARMAKMSLNMLTDIKKDTVDFQPNYDDRLQEPVVLPSRFPNILCNGSVGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ E    ++ NP+ ++++L++ I GPDFPTGG I+  R  I  +Y  GRG   
Sbjct: 181 PPHNLHEVIEGMKIVMQNPDCTLDELMQAIKGPDFPTGG-IIMGRSGIRAAYGTGRGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R++  +EE+  G  CI+VTEIPY V K+RL+E IA L+  KRI  + D+RDE+  D   
Sbjct: 240 LRSKTSIEEIK-GRNCIIVTEIPYMVNKARLVESIAGLVKDKRIDGIHDLRDETGRDGMR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  +  +++  +F L+ ++    + +  L    VP+V+ L  IL+E++  + +V
Sbjct: 299 IVIELKKDANAQVVLNKLFTLTQLQDSVGVILLALVK-GVPKVLTLKQILQEYIDFQVDV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I I++           +++RF L++ Q 
Sbjct: 358 IRRRTEFDLKKAKEREHILQGLVIALDNIDEVIEIMKTSKNIPEGKQRLMTRFGLSDIQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + I  + L  L  +E  +I  EL+ + A+    + +L + ++  + I  E+  ++E +  
Sbjct: 418 EHIAQMTLGRLTGMERQKILDELEEITAKVADYEDILANHQRVLDIIIEEVEAIQEKYGD 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                    +            +  +       +        ++       ++ +  +E 
Sbjct: 478 ERRTQIENVSGEVDIEDLIPVEESVVTYTNVGYIKRMPISVYKAQNRGGKGVTGMKQRED 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-IVTAFV 607
           D +       + D IL ++T G+AY +    L  G      + +   L  + D ++ A +
Sbjct: 538 DCVTEMSVCSSHDNILFITTKGQAYKMKCYELPEGSKASRGVNIKNLLELSDDNLIAAMI 597

Query: 608 ----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVA 662
               +D    +++V+ +G       S      ++G   + +   +++  V    G + + 
Sbjct: 598 KVEDFDDDKYIVMVTKRGKIKRTPLSAYKNVRKRGLIAIGLDDGDEIAGVRLTEGNNELL 657

Query: 663 VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +   N   +  S + +  MSR   GVR    +       +  +I EG + +  +     R
Sbjct: 658 IATHNGMAIRISENDVRVMSRTAHGVRAIKLRGDDYVVSMA-RIREGASVLTVSETGLGR 716

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +  RGG G L      ++G    
Sbjct: 717 RVELESYPVRHRGGSGVLNY----KNGDVCG 743



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/469 (12%), Positives = 136/469 (28%), Gaps = 20/469 (4%)

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+   I +QV   R   +       +R  +L+ +         ++   K     P+  
Sbjct: 344 KQILQEYIDFQVDVIRRRTEFDLKKAKEREHILQGLVIALDNIDEVIEIMKTSKNIPEGK 403

Query: 326 MESI----FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
              +          E    + +  L+     +++     +   +A   ++L         
Sbjct: 404 QRLMTRFGLSDIQAEHIAQMTLGRLTGMERQKILDELEEITAKVADYEDILANHQRVLDI 463

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            I+    I +          E ++   + +   PV  S  + T       + + +    +
Sbjct: 464 IIEEVEAIQEKYGDERRTQIENVSGEVDIEDLIPVEESVVTYTNVGYIKRMPISVYK-AQ 522

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
               +  + +     +     S+ +S                + +         R    +
Sbjct: 523 NRGGKGVTGMKQREDDCVTEMSVCSSHDNILFITTKGQAYKMKCYELPEGSKASRGVNIK 582

Query: 502 VSRA------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGD 549
                       A ++    + +   V+++ RG I+     +        L A+   +GD
Sbjct: 583 NLLELSDDNLIAAMIKVEDFDDDKYIVMVTKRGKIKRTPLSAYKNVRKRGLIAIGLDDGD 642

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            +         + +L+ + +G A  +   ++             I L  +  +V+     
Sbjct: 643 EIAGVRLTEGNNELLIATHNGMAIRISENDVRVMSRTA-HGVRAIKLRGDDYVVSMARIR 701

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
               +L VS  G    VE        R G   L   + +   + V    D + ++  +  
Sbjct: 702 EGASVLTVSETGLGRRVELESYPVRHRGGSGVLNYKNGDVCGIKVVDEDDDIIMISSDGI 761

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAG 716
           ++      I  M R  +GVRL     D  +      +  +     +   
Sbjct: 762 VIRLRACDISMMGRYSRGVRLMKVTGDNKVVTFTRTEHDDNAEIAEVEK 810


>gi|265984159|ref|ZP_06096894.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13]
 gi|264662751|gb|EEZ33012.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13]
          Length = 922

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 260/851 (30%), Positives = 407/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM 
Sbjct: 1   MNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD 
Sbjct: 61  LAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  
Sbjct: 181 GMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES
Sbjct: 240 GRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++
Sbjct: 300 DREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P            
Sbjct: 359 AFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRW 418

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  
Sbjct: 419 PAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E      +L S  +  N +  E+  V++ F+       RRT   E+         + +I 
Sbjct: 479 EIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIA 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+I+          +      S +  KE D +     A++   +L  S+
Sbjct: 531 REDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFFSS 590

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G  Y      L   + +  G+A+  ++ L   + I T               ++  +++
Sbjct: 591 RGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTR 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F +  +
Sbjct: 651 GTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDV 710

Query: 679 PEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KICEGL 709
                R   GVR     +G     +                                + +
Sbjct: 711 RVFAGRNSIGVRGIKLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDI 770

Query: 710 --------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                     T +  +   Y +  +     +  RGG G      
Sbjct: 771 VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDT 830

Query: 744 --FPRSGKFLS 752
                 GK ++
Sbjct: 831 SKTDEIGKLVA 841



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 795 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 854

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 855 SDGGQLIRVPVDGIRIAGRSTKGVTIFNMADGEKVVSVERISDADSDE---ENGNG 907


>gi|253568271|ref|ZP_04845682.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842344|gb|EES70424.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 731

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 232/733 (31%), Positives = 385/733 (52%), Gaps = 21/733 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++   +EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A IDN EI++E+L+ Y+  PDFPTGG I      + E Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIY-GISGVREGYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  D   
Sbjct: 241 MRAKAEI-ETGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTALQTSFGVNNVALVH-GRPKTLNLRDMIKYFVEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                   ++         A  Q  +       +  +     R+     V       ++ 
Sbjct: 479 ERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDA 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++    A   + ++  +  GK Y L    +  G  + +  AIQ L++++ +  +    
Sbjct: 539 DFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDSVTAYL 598

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    Y ++  +L  + KG        +     + G   + +  ++ +  V    G
Sbjct: 599 RVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTWID 713
            + + +   N + + F    +  M R   GVR  +  + G   +  +IC K  E  + + 
Sbjct: 659 NNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVIGMICIKDLETESVMV 718

Query: 714 SAGRSYNRSENDL 726
            + + Y +     
Sbjct: 719 VSEQGYGKRSEIE 731



 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 4/47 (8%)

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFL 751
            +    I  +   Y +           RGGVGS   KG   R   F+
Sbjct: 498 ADDQMIITISHMGYIKRTPLTEFRAQNRGGVGS---KGTETRDADFV 541


>gi|16125813|ref|NP_420377.1| DNA topoisomerase IV subunit A [Caulobacter crescentus CB15]
 gi|221234574|ref|YP_002517010.1| DNA topoisomerase IV subunit A [Caulobacter crescentus NA1000]
 gi|13638360|sp|O54478|PARC_CAUCR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|13422955|gb|AAK23545.1| topoisomerase IV, subunit A [Caulobacter crescentus CB15]
 gi|220963746|gb|ACL95102.1| topoisomerase IV subunit A [Caulobacter crescentus NA1000]
          Length = 759

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 380/743 (51%), Positives = 515/743 (69%), Gaps = 11/743 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L  AL  RYLAYALSTI  RA+PD+RDG KPVHRR+++AMS M L+  AA +K 
Sbjct: 17  RILDEPLTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKC 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VGEV+G  HPHGD S+YD+LVRLAQ F QR PL+ GQGNFGNIDGDSAAA RYTE +
Sbjct: 77  AKVVGEVMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECK 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+ A L+L G+DEDAVDFR TY+ +D EPVV PS FPNLLANG+SGIAVGMATSIP HN
Sbjct: 137 MTEAAMLLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+ +A   L+ NP+ +   LLE + GPDFPTGG+IVESR S++E+Y  GRGG R+RA+
Sbjct: 197 AAELIDACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAK 256

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E+ GRG++ IVVTEIPYQV+KS L+E++A+LI +K+  LL D+RDESAED+R+VL P
Sbjct: 257 WEKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAEDIRLVLEP 316

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+++++P++LMES+F LS +E+RFP+N+NVL     P VM +   L  +LAHRREVL RR
Sbjct: 317 KSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRR 376

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           +  R+  I+ R+ IL GLLIAYLN+DE+I I+R EDKPK  ++  F LT+ Q DAILN R
Sbjct: 377 ARHRLAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKPKEKLIETFGLTDIQADAILNTR 436

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN-------QIACEIREVKEIFSK 488
           LR L KLEE +I+ E   L+ E++ I ++L S  +QW        ++   + ++K    K
Sbjct: 437 LRQLAKLEEMEIRREHAELVEERDGILAMLASEAKQWKLVGVGLSEVRAALLKIKHPLDK 496

Query: 489 STDLGRR-RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
               G   R+ F E  + D     +AMI +EPIT+++S RGWIR+ K    D S L FKE
Sbjct: 497 PRPTGVTGRSVFGEAPQVDADAAIEAMIVREPITIILSERGWIRAAKGKIDDPSELKFKE 556

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD L   + A TTD++L+ S+DG+ +TL    L S RGHGE ++++I+L+    I+  F 
Sbjct: 557 GDKLGFLVPAETTDKLLIFSSDGRFFTLGCDKLPSARGHGEPVRMMIELDDKVKIIDVFP 616

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
           + +  K ++ S  G  F++ E E +AN + GK  L V   E     ++  GD +AV+G+N
Sbjct: 617 FKAGRKRILASKGGYGFLMPEEEALANRKAGKQVLNV-GNEGAAFCLEAVGDQLAVIGDN 675

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            K+LIF ++++PEM RGKGV+LQ+Y++GG+ D + F    G  WID+AGR   R   +  
Sbjct: 676 GKILIFPLEELPEMPRGKGVKLQAYREGGLRDGLSFNAETGAYWIDTAGR--RRDWAEWK 733

Query: 728 GWLGKRGGVGSLVPKGFPRSGKF 750
            W+G+R G G LVPKGF  + +F
Sbjct: 734 EWVGRRAGAGKLVPKGFATNKRF 756


>gi|6502510|gb|AAF14339.1|U86302_2 ParC [Caulobacter crescentus CB15]
 gi|2749945|gb|AAC38043.1| DNA topoisomerase IV ParC subunit [Caulobacter crescentus CB15]
          Length = 759

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 380/743 (51%), Positives = 514/743 (69%), Gaps = 11/743 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L  AL  RYLAYALSTI  RA+PD+RDG KPVHRR+++AMS M L+  AA +K 
Sbjct: 17  RILDEPLTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKC 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VGEV+G  HPHGD S+YD+LVRLAQ F QR PL+ GQGNFGNIDGDSAAA RYTE +
Sbjct: 77  AKVVGEVMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECK 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+ A L+L G+DEDAVDFR TY+ +D EPVV PS FPNLLANG+SGIAVGMATSIP HN
Sbjct: 137 MTEAAMLLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+ +A   L+ NP+ +   LLE + GPDFPTGG+IVESR S++E+Y  GRGG R+RA+
Sbjct: 197 AAELIDACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAK 256

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E+ GRG++ IVVTEIPYQV+KS L+E++A+LI +K+  LL D+RDESAED+R+VL P
Sbjct: 257 WEKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAEDIRLVLEP 316

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+++++P++LMES+F LS +E+RFP+N+NVL     P VM +   L  +LAHRREVL RR
Sbjct: 317 KSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRR 376

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           +  R+  I+ R+ IL GLLIAYLN+DE+I I+R EDKPK  ++  F LT+ Q DAILN R
Sbjct: 377 ARHRLAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKPKEKLIETFGLTDIQADAILNTR 436

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L+ E++ I ++L S  +QW  +   + EV+    K      +
Sbjct: 437 LRQLAKLEEMEIRREHAELVEERDGILAMLASEAKQWKLVGVGLSEVRAALLKIKHPLDK 496

Query: 496 --------RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   R+ F E  + D     +AMI +EPIT+++S RGWIR+ K    D S L FKE
Sbjct: 497 PAPTGVTGRSVFGEAPQVDADAAIEAMIVREPITIILSERGWIRAAKGKIDDPSELKFKE 556

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD L   + A TTD++L+ S+DG+ +TL    L S RGHGE ++++I+L+    I+  F 
Sbjct: 557 GDKLGFLVPAETTDKLLIFSSDGRFFTLGCDKLPSARGHGEPVRMMIELDDKVKIIDVFP 616

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
           + +  K ++ S  G  F++ E E +AN + GK  L V   E     ++  GD +AV+G+N
Sbjct: 617 FKAGRKRILASKGGYGFLMPEEEALANRKAGKQVLNV-GNEGAAFCLEAVGDQLAVIGDN 675

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            K+LIF ++++PEM RGKGV+LQ+Y++GG+ D + F    G  WID+AGR   R   +  
Sbjct: 676 GKILIFPLEELPEMPRGKGVKLQAYREGGLRDGLSFNAETGAYWIDTAGR--RRDWAEWK 733

Query: 728 GWLGKRGGVGSLVPKGFPRSGKF 750
            W+G+R G G LVPKGF  + +F
Sbjct: 734 EWVGRRAGAGKLVPKGFATNKRF 756


>gi|22298912|ref|NP_682159.1| DNA gyrase subunit A [Thermosynechococcus elongatus BP-1]
 gi|22295093|dbj|BAC08921.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
          Length = 853

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 235/791 (29%), Positives = 381/791 (48%), Gaps = 53/791 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
              +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+
Sbjct: 7   SSRIIPTELREEISRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPFR 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R+PLI G GNFG+ID D  AA RYTE
Sbjct: 67  KCARVVGEVLGKYHPHGDSAVYDALVRMAQDFSMRHPLIEGHGNFGSIDNDPPAAMRYTE 126

Query: 134 ARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +A E +LQ ++++ VDF D ++    EP+V P++ P LL NG SGIAVGMAT+IP
Sbjct: 127 CRLQALATEALLQDIEQETVDFVDNFDGSQQEPLVLPARIPQLLLNGASGIAVGMATNIP 186

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALI +P++S  +L+ YI GPDFPTGG I+  +  I E+Y  GRG   +
Sbjct: 187 PHNLGELVDGLVALIHHPQMSDRELMRYIPGPDFPTGGHIL-GQGGIEEAYTTGRGSMTL 245

Query: 253 RARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           RA   +E +     +    I++TE+PYQ  K+ L+EKIAEL+  K+I  + D+RDES  D
Sbjct: 246 RAVATIETLEAPGRQPREAIIITELPYQTNKAALMEKIAELVNEKKIEGIADLRDESDRD 305

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R   P +++ +++  + ++  F  NM  +     PQ++ L   L+ +L  R
Sbjct: 306 GIRVVIELKRDAHPRVVLNNLYKQTPLQVNFGANMLAIV-NGEPQLLTLKRSLEVFLRFR 364

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTE 425
            E + RR+ + ++  + R  +L+GLL+A  N+D +I +IR+       +  ++  ++L+E
Sbjct: 365 EEAIARRTRYALRKAEERDHLLQGLLVALANLDAVIQLIRSASDTALARQQLMQTYALSE 424

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E   L  +      +L   ++    I  E+ E+K  
Sbjct: 425 AQADAILQMQLRRLTALEAEKIEREHAELQRQIADYRDILAHRQRVLEIIEKEVTELKAK 484

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+        +           A  +  ++  +   +         +             
Sbjct: 485 FATPRRSRIVQADGEISDIDLIANDKSVILVTQQGYIKRMPVDTFEAQSRDGRGRKGAEI 544

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           KE D+++     +  DRIL  S  G  Y L A  +   S +  G  I  L+ +   + I 
Sbjct: 545 KEDDAVEHFFSCNDHDRILFFSDRGLVYALAAYQIPSGSRQARGTPIVQLLPIPREEKIT 604

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           +      +     L++++ KG       +        G   + +   ++++ V +     
Sbjct: 605 SVIAVQEFSEDEYLVMLTRKGFIKKTPLAAFSHIRSNGLIAISLEEGDQLRWVRRTREQD 664

Query: 661 -VAVVGENRKLLIFSI--DQIPEMSRG-KGVRLQSYKDGGISDVI--------------- 701
            + +       + F    DQ+  + R  +GV+  + + G     +               
Sbjct: 665 TIIIGSRQGMAIHFRASHDQLRPLGRATRGVKSMNLRPGDELVGMDILPAAIANRFATPS 724

Query: 702 ------------CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG- 748
                            EG   +      Y +        L  R G+G    K   +S  
Sbjct: 725 EDDSGEIEDSEETVAHSEGPWVLVITTNGYGKRVPVQQFRLQNRAGMGITATKFKAKSNE 784

Query: 749 ------KFLSS 753
                 + +++
Sbjct: 785 DQLAALRIVNA 795



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 7/114 (6%)

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVS---SEEKMKLVV 654
           +D      +     +LV+++ G    V   +     R G   T  K     +E+++  + 
Sbjct: 732 EDSEETVAHSEGPWVLVITTNGYGKRVPVQQFRLQNRAGMGITATKFKAKSNEDQLAALR 791

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
            V  GD + +V     ++   +  I   SR   GVRLQ   +            
Sbjct: 792 IVNAGDELMIVTSRGIIIRQKVMDISSQSRSATGVRLQRLDEDDAIVTAAVLPP 845


>gi|328905794|gb|EGG25570.1| DNA gyrase, A subunit [Propionibacterium sp. P08]
          Length = 891

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 232/791 (29%), Positives = 378/791 (47%), Gaps = 49/791 (6%)

Query: 1   MGVDNISNSNTLVEEN---------VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQELVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+  A    + +P+ S E+     +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNRAVQWSLAHPDASSEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G  ++  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGA-LIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           EL+ + RI  + DIRD+S+    + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 ELVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VD-NVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +           + E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASDDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+ +          K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSGRGHGEAIQ-----LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               L       +          +       ++T   Y+    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDAKGGHVAGLLSFLPDEKIAQVMTLRSYEDAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-K 685
             ++ + G   +     +E++    + + GD V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAINFRTEDEELIGAEQCSAGDDVLLISRKGQAIRFSAGDDQLRSMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFK----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           GV    ++       +         +      + G  Y +           RGG+G    
Sbjct: 711 GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGLGIKAM 770

Query: 742 KGFPRSGKFLS 752
                 G  + 
Sbjct: 771 ALSEERGSLVG 781


>gi|183219433|ref|YP_001837429.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909579|ref|YP_001961134.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774255|gb|ABZ92556.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167777855|gb|ABZ96153.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 843

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 241/754 (31%), Positives = 398/754 (52%), Gaps = 25/754 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   ++E YL YA+S I  RA+PD+RDG KPVHRR++HAM+E        + KS
Sbjct: 34  RVIPVEIEDQMKEAYLDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKS 93

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEVIG  HPHGD +VY+++VR+AQ F  R  LI GQGNFG++DGD+AAAYRYTEAR
Sbjct: 94  AKIVGEVIGNYHPHGDSAVYETMVRMAQTFSMRETLIDGQGNFGSVDGDNAAAYRYTEAR 153

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++AE +L+ ++++ V F   +++   +P V P+ FPN+L NG++GIAVGMAT+IP HN
Sbjct: 154 LTKLAEELLKDIEKNTVSFSPNFDDTRQQPDVLPANFPNILVNGSTGIAVGMATNIPPHN 213

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E   A +ALI NP+I++ +L++ + GPDFPTGG I+   E + ++Y  G+G  R+R++
Sbjct: 214 LKEAVNAVIALIQNPDITLPELMKILPGPDFPTGGTIIG-GEGLYQAYATGKGSIRIRSK 272

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             + E  +G   IV+ EIPYQV K  ++EKI +L+  K I  + +I D S      V   
Sbjct: 273 VDIIENNKGREIIVIHEIPYQVNKKNMLEKIGDLVNEKIIEGISEILDLSDRKGIRVEIH 332

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +  +++  +F L+ ++  + + M  +   R P++  L  ILK +  HRREV+ +R
Sbjct: 333 VKKDANAQVILNQLFKLTQLQVSYGITMLAILDNR-PKIFSLKEILKSYAEHRREVVVKR 391

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQVDAIL 432
           + F +    +R  IL+GL IA  NIDE+I IIR     +    S  +    +E Q DAIL
Sbjct: 392 TEFDLDKAQKRAHILEGLRIALENIDEVIRIIRASKDVREAQSSLMATFSLSELQADAIL 451

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE  +I  EL+ +      ++ +L+   +  + I  E+ +V + F      
Sbjct: 452 EMRLQRLTSLEVQKIIDELEQVRILIADLEDILSKPDRVKSIICDELGKVSQSFGN---- 507

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALH 544
             R T     S        + +I  E + V +S   +         R  K     +  + 
Sbjct: 508 -TRTTEISLESLESSTFNAEDLIADEEVVVQLSEDMFIKRLPMDTFRRQKRGGKGVQGIS 566

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            K  D +K    A T D ++L S  G+A+ L    L   +    G++++ +I+LN ++ I
Sbjct: 567 TKREDFVKKLSSAMTHDNLMLFSNKGRAFLLKVYELPIATKEARGKSLKAVINLNDDEII 626

Query: 603 VTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
            + F +       LL+V+ +G    ++  E     + G   + +   +++  V+    + 
Sbjct: 627 TSLFTFRNFDESYLLMVTREGFVKKIQLDEFTNTKKSGIIAIGLRDGDELIDVIANPNNY 686

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +  +N   +  +++++    R   GV     +D      I  K+         +   
Sbjct: 687 DVFIGSKNGLAIRMNLNELRSQGRTASGVTAMKLEDDDSIAGIT-KVEPNTNLFCISENG 745

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + +  +        RGG G    K   ++G+ + 
Sbjct: 746 FGKRTDFEEFSTKGRGGKGMTYLKIGEKNGRAVG 779



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 53/160 (33%), Gaps = 6/160 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A+  +  + + +          N L  +G   +    + L  +  I      +    L  
Sbjct: 681 ANPNNYDVFIGSKNGLAIRMNLNELRSQGRTASGVTAMKLEDDDSIAGITKVEPNTNLFC 740

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKV-TGDHVAVVGENRKLLI 672
           +S  G     +  E     R GK    +   E   +   +  V   D + V+ ++   + 
Sbjct: 741 ISENGFGKRTDFEEFSTKGRGGKGMTYLKIGEKNGRAVGISSVKEEDELLVITQSGMAIR 800

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLT 710
             +  I  + R   GV++ + KD   + D    +  +  +
Sbjct: 801 VEVKTISMVGRSAMGVKVVNTKDEDFVKDFAVVRESDSDS 840


>gi|170748445|ref|YP_001754705.1| DNA topoisomerase IV subunit A [Methylobacterium radiotolerans JCM
           2831]
 gi|170654967|gb|ACB24022.1| DNA topoisomerase IV, A subunit [Methylobacterium radiotolerans JCM
           2831]
          Length = 748

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 403/738 (54%), Positives = 526/738 (71%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                 + +++V L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD 
Sbjct: 5   FEPPSGDGIESVELKSALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDP 64

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A KK A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AA
Sbjct: 65  TTAHKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAA 124

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           YRYTEAR+T+VA L+L G+DED VDFR +YN E  EPVV P+ FPNLLANG+ GIAVGMA
Sbjct: 125 YRYTEARLTEVARLLLDGIDEDTVDFRPSYNGEKEEPVVLPAAFPNLLANGSQGIAVGMA 184

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HN  E+C+AAL LI++PE +  +L +++ GPDFPTGGI+++S ES+ E+YR GRG
Sbjct: 185 TSIPPHNAAELCDAALYLINHPEATSGQLAKFVQGPDFPTGGILIDSAESVAEAYRTGRG 244

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            FRVRARW  E++GRG+W IVVTEIPY + K RLIEK+AEL+  K++PLL D+RDESAED
Sbjct: 245 AFRVRARWAKEDLGRGTWNIVVTEIPYGIPKGRLIEKMAELLQEKKLPLLADVRDESAED 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           VRIVL P++R++DP +LMES+F L+++E R PLN+NVL  G VP+V+ L   L+EW+ HR
Sbjct: 305 VRIVLEPRSRTVDPVILMESLFRLTELEARIPLNLNVLVGGLVPKVIGLAECLREWVDHR 364

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R VL RRS +R+  IDRR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q 
Sbjct: 365 RVVLQRRSRYRLGQIDRRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEIQA 424

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL+ RLRSLRKLEE ++K E D L AEK +ID+LL S   QW  I  +IR VK+ F  
Sbjct: 425 NAILDTRLRSLRKLEEMELKREFDALTAEKAEIDALLASEPAQWKAIQAQIRAVKKTFGP 484

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
            T LGRRRTT              A++E+EPITV++S +GWIR+LK H  DLS + FK  
Sbjct: 485 ETKLGRRRTTLASPPDVGGIDFTAALVEREPITVIVSTKGWIRALKGHVADLSGVAFKGD 544

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+LKIA    TT +ILLL+T+GK +TL A  L  GRG G+ ++L+ DL+   +IV A  Y
Sbjct: 545 DTLKIAFPTETTQKILLLATNGKVFTLEASKLPGGRGFGDPVRLMADLDDGTEIVAALPY 604

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
               KLL+  S G  F+     ++ANTRKGK  L +  +    ++V   GDHVAVV   +
Sbjct: 605 RPETKLLIAGSDGRGFVAPADALVANTRKGKNVLGLDGDATAAVLVPADGDHVAVVNTEK 664

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            LLIF + ++ E++RGKGVRLQ  + G + D   FK+ +GL W D +      + + L  
Sbjct: 665 LLLIFPVSEVAELARGKGVRLQRCRSGSLLDAHVFKLADGLPWQDGSAEGRLANVSVLEK 724

Query: 729 WLGKRGGVGSLVPKGFPR 746
           WLG R  VG ++ + FP+
Sbjct: 725 WLGHRAEVGLMMARSFPK 742


>gi|256257573|ref|ZP_05463109.1| DNA gyrase subunit A [Brucella abortus bv. 9 str. C68]
 gi|260883853|ref|ZP_05895467.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297248414|ref|ZP_06932132.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196]
 gi|260873381|gb|EEX80450.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297175583|gb|EFH34930.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196]
          Length = 922

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 262/851 (30%), Positives = 408/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM 
Sbjct: 1   MNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD 
Sbjct: 61  LAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  
Sbjct: 181 GMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES
Sbjct: 240 GRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++
Sbjct: 300 DREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P            
Sbjct: 359 AFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRW 418

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  
Sbjct: 419 PAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E      +L S  +  N +  E+  V++ F+       RRT   E+         + +I 
Sbjct: 479 EIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIA 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+I+          +      S +  KE D +     A+T   +L  S+
Sbjct: 531 REDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSS 590

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G  Y      L   + +  G+A+  ++ L   + I T               ++  +++
Sbjct: 591 RGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTR 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           G     + S+ +   R GK  +K+    +K+  V   T  D V +     + + F +  +
Sbjct: 651 GTVRRNKLSDFVQVNRNGKIAMKLEDEGDKILSVDTCTEFDDVLLTCAGGQCIRFPVTDV 710

Query: 679 PEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KICEGL 709
                R   GVR  +  +G     +                                + +
Sbjct: 711 RVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDI 770

Query: 710 --------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                     T +  +   Y +  +     +  RGG G      
Sbjct: 771 VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDT 830

Query: 744 --FPRSGKFLS 752
                 GK ++
Sbjct: 831 SKTDEIGKLVA 841



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 795 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 854

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 855 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 907


>gi|329938632|ref|ZP_08288028.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045]
 gi|329302123|gb|EGG46015.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045]
          Length = 864

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 236/778 (30%), Positives = 388/778 (49%), Gaps = 29/778 (3%)

Query: 1   MGVDNIS---NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  +N         ++ + V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+
Sbjct: 1   MADENTPVTPEEGGVIAQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+   D AAA RYTE +M  ++  +++ +DE+ VDF D Y+    EP V PS+FPNLL 
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPSRFPNLLI 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIV 233
           NG++GIAVGMAT+IP HN++E+   A   +++PE   E+    L+E I GPDFPTG  +V
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWCLEHPEAPQEELLEALIERIKGPDFPTGA-LV 239

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   
Sbjct: 240 VGRKGIEEAYRTGRGSITMRAVVAVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDG 298

Query: 294 RIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           ++  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L    VP
Sbjct: 299 KVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GVP 357

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           + + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D 
Sbjct: 358 RTLSLDAFIRHWVTHQIEVVVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDT 417

Query: 413 PKPVMVSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
            +           + E Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  
Sbjct: 418 VEIARGGLMGLLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQAKITEYNEILASPV 477

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +Q   ++ E+  + E +                     A     +       V  +    
Sbjct: 478 RQRGIVSAELAAIVEKYGDDRQTKLVPYDGDMSIEDLIAEEDIVVTVTRGGYVKRTKTDD 537

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
            R+ K     +     KE D +     + T   +L  +  G+ Y   A  L        G
Sbjct: 538 YRAQKRGGKGVRGAKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARG 597

Query: 588 EAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L+    ++   +I+    YD+   L++ +  G        +  +    G   + +
Sbjct: 598 QHVANLLAFQPDEAIAEILAIRDYDAAPYLVLATKGGLVKKTPLKDYDSPRSGGVIAINL 657

Query: 645 SS-----EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
                  ++++     V + D + ++ +  + + F+     +  M R   GV+  S+++G
Sbjct: 658 REREDGSDDELIGAELVSSDDDLLLISKKAQSIRFTATDESLRPMGRATSGVKGMSFREG 717

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    +  G     +    Y +        +  RGG+G    K     G+ + +
Sbjct: 718 D-ALLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGELVGA 774


>gi|288916705|ref|ZP_06411080.1| DNA gyrase, A subunit [Frankia sp. EUN1f]
 gi|288351960|gb|EFC86162.1| DNA gyrase, A subunit [Frankia sp. EUN1f]
          Length = 816

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 232/746 (31%), Positives = 377/746 (50%), Gaps = 21/746 (2%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G      + K +R+VG+V+G 
Sbjct: 1   MQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCSRVVGDVMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+LVRLAQ +  RYPL+ G GNFG+   D  AA RYTEARM  +A  +L+
Sbjct: 61  YHPHGDSAIYDTLVRLAQSWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARMAPLAMEMLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+   SEP+V PS+FPNLL NG  GIAVGMAT+IP HN+ E+ +    
Sbjct: 121 DIDQETVDFAPNYDGRSSEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNLVEVAKGVQW 180

Query: 206 LIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
            +D+P+ +  +LLE     + GPDFPT G ++  R  I ++YR GRG  R+RA   VEE 
Sbjct: 181 ALDHPDATDAELLEALIGIVKGPDFPTYG-LIVGRNGIEDAYRTGRGSIRMRAVVNVEEN 239

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSL 320
             G   +VVTE+PYQV    L EKIAEL+   +I  + D+RDE SA   + ++    R  
Sbjct: 240 K-GRTQLVVTELPYQVNPDNLAEKIAELVRDNKITGISDVRDETSARIGQRLVIDLKRDA 298

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
              +++ +++  + ++  F +NM  +    VP+ + LD I+  ++ H+ EV+ RR+ +++
Sbjct: 299 VAKVVLNNLYKHTQLQDTFGVNMLAIVD-GVPRTLRLDQIISYYVEHQIEVIVRRTRYQL 357

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNLRLR 437
           +    R+ +L GLLIA  ++DE+IA+IRN +        ++ RFSL+E Q  AIL+++LR
Sbjct: 358 RKARERLHVLDGLLIALDHLDEVIALIRNAESADVARGQLMERFSLSEIQATAILDMQLR 417

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  LE  +I  E   L A+  +++++L S  +Q   I  E+ EV E +           
Sbjct: 418 RLAALERQRIIDEAAELRAKVSELEAILASPARQREIIGQELAEVVEKYGDERRTRLVPF 477

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                     A     +          +     RS K     +     +E D ++     
Sbjct: 478 EGDMSVEDLIAREDVVVTVTRGGYAKRTKTDLYRSQKRGGKGVQGAALREDDIVEHFFVT 537

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTC 612
            T   +L  +  G+ Y   A  L       +   +  ++  + ++ I        Y++  
Sbjct: 538 TTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVMAIQDYEAAP 597

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLL 671
            L++ + +G       ++  +N   G   + +  ++++     V  GD + +V  N + +
Sbjct: 598 YLVLATKRGLCKKTALTDFDSNRAGGLVAINLRDDDELISARLVAPGDDLLLVSRNAQSI 657

Query: 672 IFSIDQ--IPEMSRG-KGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            F  D   +  M R   GV    + D   +  +           + +    Y +      
Sbjct: 658 RFHADDEQLRPMGRATSGVIGMRFDDSDELLSMDVVVPDTTADLLVATSGGYAKRTPLAE 717

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  RGG G L  K     G  + +
Sbjct: 718 YPVQGRGGKGVLTAKIVSTRGGLVGA 743



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 5/111 (4%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLV-VKVTGDH 660
             V D+T  LLV +S G A     +E     R GK  L    VS+   +    V    D 
Sbjct: 692 VVVPDTTADLLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKIVSTRGGLVGALVVAPDDQ 751

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           +  +  N  +L      +    R   GVRL   + G     +        +
Sbjct: 752 LYAITSNGGVLRTVAKDVRRAQRQTMGVRLIDLEAGVQVVGVARNADANDS 802


>gi|229586449|ref|YP_002844950.1| DNA gyrase subunit A [Rickettsia africae ESF-5]
 gi|228021499|gb|ACP53207.1| DNA gyrase subunit A [Rickettsia africae ESF-5]
          Length = 905

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 238/833 (28%), Positives = 388/833 (46%), Gaps = 91/833 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ ++    N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G
Sbjct: 1   MTDKSS---SNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 ++KSARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PL+ GQGNFG++DGD+
Sbjct: 58  NHASKPYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+RM +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAV
Sbjct: 118 AAAMRYTESRMAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  
Sbjct: 178 GMATNIPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +      I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES
Sbjct: 237 GRGSIIMRGRAEIENIDNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  ++
Sbjct: 297 NKNGVRIFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           + R  V+  R+ + +     R  IL GL IA  NIDEII II+  + P            
Sbjct: 356 SFREVVITNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQW 415

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 + + TE Q  AIL +RL+ L  +E+ +++ +L NL+ E
Sbjct: 416 EALNILPLVKLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITE 475

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +  ++L S  +    +  E+ +VKE F+           F +         +  +   
Sbjct: 476 ITEYLNILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVT 535

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               +        R+ K      S L  ++ D         T   +L  S  G+ Y+L  
Sbjct: 536 LGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKL 595

Query: 578 GNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
             L      G+   +  ++ L  N+ I                 ++  ++KGN    +  
Sbjct: 596 YKLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLL 655

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
           +       GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   G
Sbjct: 656 DFTKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDG 715

Query: 687 VRLQSY-KDGGISDVICFK----------------------------------------- 704
           VR     K+  +  +   K                                         
Sbjct: 716 VRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEVFNPEELGVSLTAP 775

Query: 705 -----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 AIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           + +S   +L V+  G              R G   + +   +K   +  V+ V   D + 
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  + KL+   ++ +    R   GV L    DG     +     
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 62/227 (27%), Gaps = 57/227 (25%)

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI-- 631
            +   +LL         ++ I L+ +  ++          +L+ +  G A       +  
Sbjct: 648 NIRRSDLLDFTKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRV 707

Query: 632 -IANTRKGKTFLKVSSEEKMKLVVKVTG-------------------------------- 658
             + T  G   +K++ E+ +  +  + G                                
Sbjct: 708 IKSRTSDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEVFNPEE 767

Query: 659 -----------------DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD--GGIS 698
                            + +  V EN      S        RG  G+      D  G + 
Sbjct: 768 LGVSLTAPAIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVV 827

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            V+  K+ + L  I ++G+            +  R   G ++ K   
Sbjct: 828 GVMPVKMDDELMLITNSGK--LIRCKLESVRITGRNTSGVILFKLDD 872



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A++ + IL ++ +G      A         G  I  +   +    +V         +L+
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 616 VVSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           ++++ G     +     I      G    K+   EK+  V  +  
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884


>gi|283956423|ref|ZP_06373903.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792143|gb|EFC30932.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336]
          Length = 863

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 248/786 (31%), Positives = 401/786 (51%), Gaps = 50/786 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHI-EKKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   + I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAV 663
             +D +  L   +  G       SE       G   + +   +++   + V    D + V
Sbjct: 605 TDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFV 664

Query: 664 -----------------------------------VGENRKLLIFSIDQIPEMSR-GKGV 687
                                              V +    + F + ++ E+ R  +GV
Sbjct: 665 SGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGV 724

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 725 TAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 784

Query: 747 SGKFLS 752
           +   +S
Sbjct: 785 TKDLIS 790


>gi|123968701|ref|YP_001009559.1| DNA gyrase subunit A [Prochlorococcus marinus str. AS9601]
 gi|123198811|gb|ABM70452.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
          Length = 865

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 238/795 (29%), Positives = 385/795 (48%), Gaps = 46/795 (5%)

Query: 1   MGVDNISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M     S+++ L E+N  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI+
Sbjct: 1   MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM E+GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           G++D D  AA RYTE+R+  + +  +L+ ++ + VDF D ++    EP V P++ P LL 
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLL 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG+SGIAVGMAT+IP HN+ E+     ++I NP +   +L E I GPDFPTGG I+  R+
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIIKNPSLEDRELFEIIKGPDFPTGGQIL-GRD 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
            I E+++ GRG   +R    +E++          +++TE+P+Q  K+ LIE+IA+L+  K
Sbjct: 240 GIKETFKTGRGSITMRGVANIEQIKSTSRAEKDAVIITELPFQTNKAALIERIADLVNEK 299

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           ++  + DIRDES  D   ++    R   P +++ ++F L+ ++  F  N+  L     P 
Sbjct: 300 KLEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVK-GEPT 358

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            + L  +L  +L  R E + RR+ F ++  + R  I+ GLL+A   +DEII +IR+    
Sbjct: 359 TLSLRKMLDVFLDFRVETIRRRTGFLLKKAEERDHIVNGLLLALGAMDEIINLIRSAKDT 418

Query: 414 ---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              +  + +   L+  Q +AIL ++LR L  LE  +IK E D L  +      +LNS ++
Sbjct: 419 VSARENLQADHELSATQAEAILQMQLRRLTALEADKIKGEHDELTRKINLYKQILNSKER 478

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            +  I  E+ ++ E FS                    A  +  ++  E   +        
Sbjct: 479 IFEIILEELNKIDERFSSPRKTEILDLGGGLDDIDLIANDRSVVLLTEAGYLKRMPVNEF 538

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
            S    S   +    +E D +K+ +  +  D +LL S  G +Y LPA  +       +  
Sbjct: 539 ESTSRGSRGKAGTKTQEDDEVKLFISCNDHDTLLLFSDRGVSYALPAYRVPMSSRTAKGT 598

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
               L+ +   + I +      +D+ C LL+++  G       S        G   + + 
Sbjct: 599 PSVQLLPIPREEKITSLVAVDSFDNDCYLLMLTKAGFIKRTSLSAFSKIRSNGLIAINLE 658

Query: 646 SEEKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
             + +  V     GD V +       + F   I+++  + R  +GV+  + + G     +
Sbjct: 659 DGDALTWVRLSREGDSVLIGSRTGMAIHFRLDINELRPLGRTARGVKSMNLRKGDNLVSM 718

Query: 702 -------------------------CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
                                         EG   + ++     +        L KR G+
Sbjct: 719 DVLTSDLVDQLAKSEDITKESDENLEVNSSEGPWVLIASAFGLGKRVPVTQFRLQKRAGM 778

Query: 737 GSLVPKGFPRSGKFL 751
           G    K   +    +
Sbjct: 779 GLRAIKFRIKDDVLV 793



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSEEKMKLVVKV--TGDHVAVVG 665
               +L+ S+ G    V  ++     R G     +K   ++ + + +KV   G+ +  V 
Sbjct: 749 EGPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAIKFRIKDDVLVCLKVLGEGEELLFVT 808

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           E   ++  + D+I + SR   GV+LQ    G     +     E
Sbjct: 809 EKGVIVRTNADKISQQSRAATGVKLQRLDMGDHLSEVVLVPHE 851


>gi|256369524|ref|YP_003107034.1| DNA gyrase subunit A [Brucella microti CCM 4915]
 gi|255999686|gb|ACU48085.1| DNA gyrase subunit A [Brucella microti CCM 4915]
          Length = 922

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 260/851 (30%), Positives = 408/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM 
Sbjct: 1   MNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD 
Sbjct: 61  LAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ +V + +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRLEKVTKSLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  
Sbjct: 181 GMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES
Sbjct: 240 GRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++
Sbjct: 300 DREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P            
Sbjct: 359 AFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRW 418

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  
Sbjct: 419 PAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E      +L S  +  N +  E+  V++ F+       RRT   E+         + +I 
Sbjct: 479 EIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIA 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+I+          +      S +  KE D +     A+T   +L  S+
Sbjct: 531 REDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSS 590

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G  Y      L   + +  G+A+  ++ L   + I T               ++  +++
Sbjct: 591 RGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTR 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F +  +
Sbjct: 651 GTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDV 710

Query: 679 PEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KICEGL 709
                R   GVR  +  +G     +                                + +
Sbjct: 711 RVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDI 770

Query: 710 --------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                     T +  +   Y +  +     +  RGG G      
Sbjct: 771 VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDT 830

Query: 744 --FPRSGKFLS 752
                 GK ++
Sbjct: 831 SKTDEIGKLVA 841



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 795 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 854

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 855 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 907


>gi|319760599|ref|YP_004124537.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF]
 gi|318039313|gb|ADV33863.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF]
          Length = 846

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 247/784 (31%), Positives = 381/784 (48%), Gaps = 48/784 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V +   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM  +G  +   +KK
Sbjct: 6   KEITQVYIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMQILGNYWNKNYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD++VR+AQPF+ RY LI GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTIVRMAQPFLMRYVLIDGQGNFGSVDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +L  ++++ VD+   Y+  +  P V P++ PN+L NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKISNELLSDLEKETVDYEFNYDGTERIPEVLPARIPNILINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA IDN  I+I++L+++I GPDFP+   ++     + ++Y  G+G   +RA
Sbjct: 186 NLSEVVNGCLAFIDNENITIDELMQHIPGPDFPSAA-VINDCSELKKAYETGKGKIYIRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +  +V  G   I+V EIPYQV KS+L+EKIAEL+  KRI  +  +RDES +D   V+
Sbjct: 245 RAEINTDVKTGRESIIVYEIPYQVNKSKLLEKIAELVKTKRIDGIHSLRDESDKDGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                    ++++ +++ L+ ++  F +NM  L     P+VM L  IL  ++ HRR V+ 
Sbjct: 305 IDIKHDAISEIVLNNLYSLTQLQVSFGINMVAL-HHGQPKVMSLKDILSAFICHRRSVIT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------------- 418
           RR  F ++    R+ +L+GL+IA  NID +I +IR  +                      
Sbjct: 364 RRILFELKKASNRIHVLEGLVIALSNIDIVIEVIRRSNSAFNAGCILTSQSWRANDVTNM 423

Query: 419 ----------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 +    T+NQ  AIL+LRL  L  LE  ++  E D+LL 
Sbjct: 424 RKSISIDLLNSEWLDKNNFTKNNECYFTKNQARAILDLRLHKLTTLEHDKLLVEYDSLLK 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           + EK+   L +     + I  E+  +KE +S         T                +  
Sbjct: 484 KMEKLIFTLKNKSSLMDVIRQELVSIKEEYSDIRRTEINNTIPSIDVENLINQRDVVVTL 543

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                V         + K           KE D +   L A+T D +LL S  G+ Y + 
Sbjct: 544 SYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVLLFSNYGRIYWMK 603

Query: 577 AGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI 631
              L        G  I  L+ L+ N+ I T      Y    ++ + +S G        E 
Sbjct: 604 VYRLPEVKRSSRGRPIINLLPLDVNERITTILPIQKYTKGHQVFMATSSGFVKKTALMEF 663

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
                 G   L ++  +++       G + V +     K++ F   Q+  M R   GV+ 
Sbjct: 664 SRPRNVGIIALNLNVGDELIGADVTDGNNEVMLFTAYGKVVRFKETQVRSMGRSAVGVKG 723

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                G    V         + +      + +  +     L  R   G +  K   R+G 
Sbjct: 724 IHLLQGDRV-VSLIIPKNKSSILTITKNGFGKRTDQSEYPLKSRSTKGVISIKVTERNGN 782

Query: 750 FLSS 753
            + +
Sbjct: 783 VVGA 786


>gi|217077633|ref|YP_002335351.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B]
 gi|217037488|gb|ACJ76010.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B]
          Length = 806

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 226/749 (30%), Positives = 397/749 (53%), Gaps = 25/749 (3%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   L+E YL+Y++S I  RAIPD+RDG KPV RRI+++M E+G+     FKKSARIVG
Sbjct: 6   PIEEELKESYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSARIVG 65

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD ++YD++VR+AQ +  RY LI GQGNFG+ID D  AA RYTEAR+ ++A
Sbjct: 66  EVMGKYHPHGDAAIYDTIVRMAQDWTMRYKLIDGQGNFGSIDRDPPAAMRYTEARLAKIA 125

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L+ +D++ V+  D ++    EP V PSKFPNLLANG++GIAVGM T+IP HN+ E+ 
Sbjct: 126 EELLEDIDKETVNMTDNFDGSLKEPEVLPSKFPNLLANGSTGIAVGMTTNIPPHNITELV 185

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
              +ALI NPEISIE+L+ +I GPDFPTGG I+  +  I E Y  G+G F +R +    E
Sbjct: 186 NGLIALIKNPEISIEELMNFIPGPDFPTGGEII-GKSGIREMYTTGKGSFTIRGK-VHVE 243

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
             +    IV+TEIP+ + K+ LI+KI E      +P ++DIRDES ++   ++       
Sbjct: 244 EKKKKKNIVITEIPFNISKADLIKKIVEYAEKSSLP-IKDIRDESDKEGLRIVIEIPNDT 302

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           + ++++ +++  + +++ F   + V+   + P +M L  ++  ++ HR EV+ RR+ +  
Sbjct: 303 NEEIIINNLYKHTQLQSSFHSQLLVIDKEKKPVLMNLKELMWAFVEHRFEVVRRRAQYYY 362

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLR 437
           +   ++  IL+GL+ A  +ID II++IRN +        ++  F+ TE Q  AI++LRL 
Sbjct: 363 KQYSKKAHILEGLIKASRSIDTIISVIRNSEDQNSAIHELIDMFNFTETQAKAIVDLRLG 422

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L KLE  ++  + ++L+ + +    L+ + ++ + +I  E+  +K  +        R++
Sbjct: 423 RLTKLEISKLIDDYNDLVNKMKVEKELIENDQKVYEKIIEELEAIKSEYGD-----SRKS 477

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGD 549
              +         +  +I  + + + ++ +G+++ +        +     ++  +  + D
Sbjct: 478 IILDHEERKIEFNELELIPDKEVVLSLTKKGYLKMMSLDTFKTQRRGGKGVTGSNLMDDD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAFV 607
           ++   ++ H   + L  ++ GK Y L    +          Q    +++  ++ I+T   
Sbjct: 538 AIMEIIYTHLHGKTLFFTSYGKVYILNNYQIEENSRTSRGRQIAKYLNIGQDEKILTMLS 597

Query: 608 YDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVV 664
            D+   +L  V+  G A      E      +G   +    ++ +  V K+      + + 
Sbjct: 598 VDNFEGELFFVTKNGKAKRTSLKEFENINSRGMKAITFDGDDLLVSVQKIDNPDQTILIA 657

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
            +N   + F I ++  M R   GV      +          + +    +    + Y +  
Sbjct: 658 TKNGLCIRFPISEVRTMGRNAMGVIGIRLSNDDAVVSSSLLMDDEHYLLTVTSKGYGKLT 717

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + KRGG+G        ++G  + 
Sbjct: 718 ETSQYRIQKRGGLGIKNISDISKAGHIVG 746



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 5/157 (3%)

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           +    IL+ + +G     P   + +   +   +  +   N +  + ++ + D    LL V
Sbjct: 649 NPDQTILIATKNGLCIRFPISEVRTMGRNAMGVIGIRLSNDDAVVSSSLLMDDEHYLLTV 708

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIF 673
           +SKG   + E S+     R G     +S   K   +  V  V G+  + +  +N   L  
Sbjct: 709 TSKGYGKLTETSQYRIQKRGGLGIKNISDISKAGHIVGVTHVLGNENMMIFTKNGMTLKI 768

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           ++D +  + R  KGV+L +  +G           E  
Sbjct: 769 NLDSLRPLGRVTKGVKLVNLSEGDEIADFAVIRGEDD 805



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/281 (9%), Positives = 73/281 (25%), Gaps = 23/281 (8%)

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
             +   +      +     T      +       +  L  YQI+         +      
Sbjct: 526 KGVTGSNLMDDDAIMEIIYTHLHGKTLFFTSYGKVYILNNYQIEENSRTSRGRQIAKYLN 585

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT------------TFCEVSRADKATLQQ 512
           +   ++    ++ +  E +  F       +R +                    D     Q
Sbjct: 586 IGQDEKILTMLSVDNFEGELFFVTKNGKAKRTSLKEFENINSRGMKAITFDGDDLLVSVQ 645

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---------EGDSLKIALHAHTTDRI 563
            +   +   ++ +  G         V     +           +   +  +L       +
Sbjct: 646 KIDNPDQTILIATKNGLCIRFPISEVRTMGRNAMGVIGIRLSNDDAVVSSSLLMDDEHYL 705

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           L +++ G             +  G  I+ + D++    IV          +++ +  G  
Sbjct: 706 LTVTSKGYGKLTETSQYRIQKRGGLGIKNISDISKAGHIVGVTHVLGNENMMIFTKNGMT 765

Query: 624 FIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTGDHVA 662
             +    +    R  KG   + +S  +++     + G+   
Sbjct: 766 LKINLDSLRPLGRVTKGVKLVNLSEGDEIADFAVIRGEDDV 806


>gi|172039690|ref|YP_001799404.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109]
 gi|171850994|emb|CAQ03970.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109]
          Length = 838

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 218/770 (28%), Positives = 380/770 (49%), Gaps = 23/770 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D  +N    + + ++ + L+  ++  Y+ YA+S I  RA+P++RDG KPVHRRI++A
Sbjct: 1   MSDD--TNGGDNLFDRIEPIDLQKEMQNSYIDYAMSVIVGRALPEVRDGMKPVHRRILYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G      + KSA+ V E +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+
Sbjct: 59  MFDNGHRPERGYVKSAKPVAETMGNYHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA RYTE R+T +A  +++ + ED V F+  Y+ + SEP V PS+ PNLL NG+
Sbjct: 119 RGNDGAAAMRYTECRLTPLAMEMVRDIREDTVVFQPNYDGKTSEPTVLPSRVPNLLMNGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN+ E+ +A   L++NP      ++E  + ++ GPDFPT G ++   
Sbjct: 179 GGIAVGMATNIPPHNLNELADAIYWLLENPEAEEAEALEACMGFVKGPDFPTAG-LIVGE 237

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I ++YR GRG  R+R +  +EE G     IV+TE+PYQV    L+  IAE +   ++ 
Sbjct: 238 KGIDDAYRTGRGSIRMRGKAEIEEEGS-RQVIVITELPYQVNPDNLVSSIAEQVRDGKLK 296

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            +  I DE S      ++    R   P +++ +++  S ++T F  NM  +    VP+ +
Sbjct: 297 GISKIDDESSDRVGLRIVVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVD-GVPRTL 355

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-- 413
            LD +L  ++ H+ +V+ RR+ FR++  +    IL+GL+ A   +DE+IA+IRN      
Sbjct: 356 RLDQMLSLYVKHQIDVIVRRTQFRLRKAEEDAHILRGLVKALDALDEVIALIRNSATVDI 415

Query: 414 -KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++   ++ E Q +AIL ++LR L  LE  +I  +L  L      ++ +L   ++Q 
Sbjct: 416 AREGLMDLLTVDEIQANAILAMQLRRLAALERQKIIDQLAELERIIADLEDILAKPERQR 475

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +  E+ E+ E +           T         A     +          +     R+
Sbjct: 476 AIVRDELAEIVEKYGDERRTQIVSATGDVSEEDLIARENVVVTITSTGYAKRTKVDSYRN 535

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI 590
            +     +     ++ D ++      T D +L  +  G+ Y L    L        G+ +
Sbjct: 536 QRRGGKGVRGAELRQDDVVRHFFVCSTHDTVLFFTNMGRMYRLKTYELPEATRTARGQHV 595

Query: 591 QLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L++    + I        ++    L++ +++G       ++       G   + ++  
Sbjct: 596 ANLLEFQPGEQIAQVIQIQSFEDAPYLVLATAQGRVKKSRLTDYATTRSSGLIAINLNEG 655

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICF 703
           +K+      +  D + +V E  + + F+ D   +  M R   GV    ++       +  
Sbjct: 656 DKLIGAQLCSAEDDLLLVSEEGQAMRFTADDETLRPMGRATAGVYGMRFRGEDQLLAMTV 715

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +   ++ ++G  Y +           RGG+G +  K     GK + +
Sbjct: 716 VQEDSALFVATSG-GYGKRTPMEEYPAKGRGGLGVVAFKYQKSRGKLIGA 764



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 87/268 (32%), Gaps = 14/268 (5%)

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
           +   D+++       +               ++  +   +  T  G+      E    ++
Sbjct: 547 ELRQDDVVRHFFVCSTHDTVLFFTNMGRMYRLKTYELPEATRTARGQHVANLLEFQPGEQ 606

Query: 508 --ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHT 559
               +Q    E  P  V+ + +G ++  +           L A++  EGD L  A     
Sbjct: 607 IAQVIQIQSFEDAPYLVLATAQGRVKKSRLTDYATTRSSGLIAINLNEGDKLIGAQLCSA 666

Query: 560 TDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
            D +LL+S +G+A    A +      G   A    +       ++   V      L V +
Sbjct: 667 EDDLLLVSEEGQAMRFTADDETLRPMGRATAGVYGMRFRGEDQLLAMTVVQEDSALFVAT 726

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGDHVAVV-GENRKLLIFS 674
           S G        E  A  R G   +      S  K+   + VT D   +       ++   
Sbjct: 727 SGGYGKRTPMEEYPAKGRGGLGVVAFKYQKSRGKLIGALTVTEDDEILAMTSAGGVIRTE 786

Query: 675 IDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++QI E  R   GVRL     G     +
Sbjct: 787 VNQIRETGRSTMGVRLVDLDKGVELVAV 814


>gi|297625215|ref|YP_003686978.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296920980|emb|CBL55517.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 911

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 220/781 (28%), Positives = 375/781 (48%), Gaps = 50/781 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             +  V  V L   ++  +L YA+S I ERA+PD+RDG KPVHRR+I+ M + G      
Sbjct: 33  PAKGRVDPVDLTSEIQNSFLDYAMSVIVERALPDVRDGLKPVHRRVIYTMYDGGYRPDRG 92

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RYPL+SGQGNFG+   D AAA RY
Sbjct: 93  WNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYPLVSGQGNFGSPGNDGAAAMRY 152

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +++ +D+  VDF+  Y+  D+EP V P++FPNLL NG++GIAVGMAT+I
Sbjct: 153 TECRMAPLAMEMVRDIDQGTVDFQPNYDNRDTEPTVLPARFPNLLVNGSTGIAVGMATNI 212

Query: 192 PSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+ EA    +++PE S E+     +  + GPDFP G  ++  R+ I ++YR GR
Sbjct: 213 PPHNLREVNEAVQWFLEHPEASDEELLEASMARVKGPDFPNGA-LIVGRKGIEDAYRTGR 271

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G   +RA   +EE  +G   +VVTE+PY      L +KIA+L+ + R+  + DIRD+S+ 
Sbjct: 272 GSVTMRAVINIEEDRKGRTELVVTELPYMCNPDNLAQKIADLVNSGRLTGISDIRDDSSA 331

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              + +     R   P ++M +++  + ++  F  NM  L    VP+ + LD  ++ W+ 
Sbjct: 332 RTGQRLAIMLKRDAQPRVVMNNLYKHTQLQDTFGCNMLALVD-NVPRTLRLDQFIRYWVL 390

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSL 423
           H+ EV+ RR+  ++Q  ++   I +GL+ A   +DE+IA+IR     +           +
Sbjct: 391 HQIEVIVRRTEHQLQQAEKEAHIYRGLVKALDMLDEVIALIRRSPTTEQASAGLQKLLDI 450

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            + Q  AILN++LR L  LE  +I  ++  L      +  +L + ++Q + ++ E+ E+ 
Sbjct: 451 DDVQAAAILNMQLRRLAALERQKIIDKMKELDTLIADLKDILANRERQRSIVSNELGEIV 510

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538
             +        RRT       A+     +  I  + + V I+  G+ +  ++        
Sbjct: 511 GKYGDE-----RRTQII---AAEGDFSDEDFIPDDDMVVTITRGGYAKRTRTDQYRPQRR 562

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---- 591
               +     +  D ++          IL  +  G+ Y +    L  G    +       
Sbjct: 563 GGKGVRGATLRADDEVQHLFATTNHQWILFFTDHGRVYRIKTWQLPEGGRDAKGGHVAGL 622

Query: 592 -LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEK 649
              +       ++    Y+    L++ + +G       S   +  + G   +     +++
Sbjct: 623 LSFLPDEKIAQVLALRSYEDAEYLVLATKQGLVKKTALSAYDSPRQAGLIAVNFRADDDE 682

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +     V   D V ++    + + F  D   +  M R   GV    +++G     +    
Sbjct: 683 LIGAELVDASDDVLLISRLGQAIRFRADDEQMRPMGRTTSGVTGMRFREGDELLSMSVVP 742

Query: 706 CEG--------------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            E               L         + +        +  RGG+G    +     G  +
Sbjct: 743 AERGEASDEHADEEDEPLYVFTVTNGGFAKRTPVGDYRVQNRGGLGIKAMRMDDERGHLV 802

Query: 752 S 752
            
Sbjct: 803 G 803


>gi|78779457|ref|YP_397569.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312]
 gi|78712956|gb|ABB50133.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312]
          Length = 863

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 237/783 (30%), Positives = 386/783 (49%), Gaps = 44/783 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +D+ ++  +   + +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 5   IDSGNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMY 64

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D
Sbjct: 65  ELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVD 124

Query: 123 GDSAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            D  AA RYTE+R+  + +  +L+ ++ + VDF D ++    EP V P++ P LL NG+S
Sbjct: 125 NDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSS 184

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+     ++I+NP I   +L E I GPDFPTGG I+  R+ I E
Sbjct: 185 GIAVGMATNIPPHNLGELINGLKSIINNPSIEDRELFELIKGPDFPTGGQIL-GRDGIRE 243

Query: 242 SYRLGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
           +++ GRG   +R    +E++          +++TE+P+Q  K+ LIE+IA+L+  +++  
Sbjct: 244 TFKTGRGSITMRGVANIEQIKSAGRAEKDAVIITELPFQTNKAGLIERIADLVNERKLEG 303

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + DIRDES  D   ++    R   P +++ ++F L+ ++  F  N+  L     P  + L
Sbjct: 304 ISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVK-GEPTTLSL 362

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---K 414
             +L  +L  R E + RR+ F ++  + R  I+KGLL+A   +DEII +IR+       +
Sbjct: 363 RRMLDVFLDFRVETIRRRTGFLLRKAEERDHIVKGLLLALDAMDEIINLIRSAKDTISAR 422

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             + +   L+  Q +AIL ++LR L  LE  +IK+E D L  +  +   +LNS ++ +  
Sbjct: 423 EKLQTDHELSSTQAEAILQMQLRRLTALEADKIKAEHDELTKKINQYQQILNSKERIFEI 482

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  E+ ++ E FS                    A  +  ++  E   +         S  
Sbjct: 483 ILEELNKIDERFSSPRKTEILDLGGGLDDIDLIANDRSVVLLTEAGYLKRMPVNEFESTS 542

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
             S   +    +  D +K+ +  +  D +LL S  G AY LPA  +       +      
Sbjct: 543 RGSRGKAGTKTQGDDEVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTAKGTPSVQ 602

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ +   + I +      +D+ C LL+++  G       S        G   + +   + 
Sbjct: 603 LLPIPREEKITSLVAVDSFDNDCYLLMLTKSGFIKRTSLSAFSKIRSNGLIAINLEDGDA 662

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYKDGG--------- 696
           +  V     GD V +       + F   I+++  + R  +GV+  + K G          
Sbjct: 663 LTWVRLSKEGDSVLIGSRTGIAIHFRLDINELRPLGRTARGVKSMNLKKGDNLVSMDVLT 722

Query: 697 ----------------ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                           I + I     +G   + ++     +        L KR G+G   
Sbjct: 723 SDLVDKLAKIDDLNKEIEENIEVNSSDGPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRA 782

Query: 741 PKG 743
            K 
Sbjct: 783 IKF 785



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSEEKMKLVVKV--TGDHVAVVG 665
               +L+ S+ G    V  ++     R G     +K   ++ + + +KV   G+ +  V 
Sbjct: 749 DGPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAIKFRIQDDVLVCLKVLGEGEELLFVT 808

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           E   ++  + D+I + SR   GV+LQ   +G     +     E +  ID  
Sbjct: 809 EKGVIVRTNADKISQQSRAATGVKLQRLDEGDHLSEVVLVPREQIEEIDQT 859


>gi|34580784|ref|ZP_00142264.1| DNA gyrase subunit A [Rickettsia sibirica 246]
 gi|28262169|gb|EAA25673.1| DNA gyrase subunit A [Rickettsia sibirica 246]
          Length = 905

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/833 (28%), Positives = 389/833 (46%), Gaps = 91/833 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ ++    N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G
Sbjct: 1   MTDKSS---SNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 ++KSARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PL+ GQGNFG++DGD+
Sbjct: 58  NHASKPYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+RM +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAV
Sbjct: 118 AAAMRYTESRMAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  
Sbjct: 178 GMATNIPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES
Sbjct: 237 GRGSIIMRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  ++
Sbjct: 297 NKNGVRIFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           + R  V+  R+ + +     R  IL GL IA  NIDEII II+  + P            
Sbjct: 356 SFREVVITNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMVRQW 415

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 + + TE Q  AIL +RL+ L  +E+ +++ +L NL+ E
Sbjct: 416 EALNILPLVKLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITE 475

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +  ++L S  +    +  E+ +VKE F+           F +         +  +   
Sbjct: 476 ITEYLNILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVT 535

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               +        R+ K      S L  ++ D         T   +L  S  G+ Y+L  
Sbjct: 536 LGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKL 595

Query: 578 GNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
             L      G+   +  ++ L  N+ I                 ++  ++KGN    +  
Sbjct: 596 YKLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLL 655

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
           +       GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   G
Sbjct: 656 DFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDG 715

Query: 687 VRLQSY-KDGGISDVICFK----------------------------------------- 704
           VR     K+  +  +   K                                         
Sbjct: 716 VRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNPEELGVSLTAP 775

Query: 705 -----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 AIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           + +S   +L V+  G              R G   + +   +K   +  V+ V   D + 
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  + KL+   ++ +    R   GV L    DG     +     
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 63/227 (27%), Gaps = 57/227 (25%)

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI-- 631
            +   +LL  +      ++ I L+ +  ++          +L+ +  G A       +  
Sbjct: 648 NIRRSDLLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRV 707

Query: 632 -IANTRKGKTFLKVSSEEKMKLVVKVTG-------------------------------- 658
             + T  G   +K++ E+ +  +  + G                                
Sbjct: 708 IKSRTSDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNPEE 767

Query: 659 -----------------DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD--GGIS 698
                            + +  V EN      S        RG  G+      D  G + 
Sbjct: 768 LGVSLTAPAIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVV 827

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            V+  K+ + L  I ++G+            +  R   G ++ K   
Sbjct: 828 GVMPVKMDDELMLITNSGK--LIRCKLESVRITGRNTSGVILFKLDD 872



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A++ + IL ++ +G      A         G  I  +   +    +V         +L+
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 616 VVSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           ++++ G     +     I      G    K+   EK+  V  +  
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884


>gi|15892196|ref|NP_359910.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7]
 gi|20138264|sp|Q92IZ6|GYRA_RICCN RecName: Full=DNA gyrase subunit A
 gi|15619329|gb|AAL02811.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7]
          Length = 905

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 238/833 (28%), Positives = 388/833 (46%), Gaps = 91/833 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ ++    N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G
Sbjct: 1   MTDKSS---SNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 ++KSARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PL+ GQGNFG++DGD+
Sbjct: 58  NHASKPYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+RM +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAV
Sbjct: 118 AAAMRYTESRMAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  
Sbjct: 178 GMATNIPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES
Sbjct: 237 GRGSIIMRGRAEIENIGNNRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  ++
Sbjct: 297 NKNGVRIFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           + R  V+  R+ + +     R  IL GL IA  NIDEII II+  +              
Sbjct: 356 SFREVVITNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQW 415

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 + + TE Q  AIL +RL+ L  +E+ +++ +L NL+ E
Sbjct: 416 EALNILPLVKLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITE 475

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +  ++L S  +    +  E+ +VKE F+           F +         +  +   
Sbjct: 476 ITEYLNILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVT 535

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               +        R+ K      S L  ++ D         T   +L  S  G+ Y+L  
Sbjct: 536 LGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKL 595

Query: 578 GNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
             L      G+   +  ++ L  N+ I                 ++  ++KGN    +  
Sbjct: 596 YKLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLL 655

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
           +       GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   G
Sbjct: 656 DFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDG 715

Query: 687 VRLQSY-KDGGISDVICFK----------------------------------------- 704
           VR     K+  +  +   K                                         
Sbjct: 716 VRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNPEELGVSLTAP 775

Query: 705 -----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 AIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           + +S   +L V+  G              R G   + +   +K   +  V+ V   D + 
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  + KL+   ++ +    R   GV L    DG     +     
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 63/227 (27%), Gaps = 57/227 (25%)

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI-- 631
            +   +LL  +      ++ I L+ +  ++          +L+ +  G A       +  
Sbjct: 648 NIRRSDLLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRV 707

Query: 632 -IANTRKGKTFLKVSSEEKMKLVVKVTG-------------------------------- 658
             + T  G   +K++ E+ +  +  + G                                
Sbjct: 708 IKSRTSDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNPEE 767

Query: 659 -----------------DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD--GGIS 698
                            + +  V EN      S        RG  G+      D  G + 
Sbjct: 768 LGVSLTAPAIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVV 827

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            V+  K+ + L  I ++G+            +  R   G ++ K   
Sbjct: 828 GVMPVKMDDELMLITNSGK--LIRCKLESVRITGRNTSGVILFKLDD 872



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A++ + IL ++ +G      A         G  I  +   +    +V         +L+
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 616 VVSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           ++++ G     +     I      G    K+   EK+  V  +  
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884


>gi|91205609|ref|YP_537964.1| DNA gyrase subunit A [Rickettsia bellii RML369-C]
 gi|123084566|sp|Q1RID9|GYRA_RICBR RecName: Full=DNA gyrase subunit A
 gi|91069153|gb|ABE04875.1| DNA gyrase subunit A [Rickettsia bellii RML369-C]
          Length = 905

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 242/833 (29%), Positives = 389/833 (46%), Gaps = 91/833 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++N+    N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G
Sbjct: 1   MTDNNS---SNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                A++KSARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+
Sbjct: 58  NHANRAYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+RM +VA  +++ +D++ V F   Y+  + EP V PS FPNLL NG+ GIAV
Sbjct: 118 AAAMRYTESRMAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A    +DN +I I  LLE + GPDFPT GII+     I  +Y  
Sbjct: 178 GMATNIPPHNLGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIIL-GVNGIKSAYLT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +G G   I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES
Sbjct: 237 GRGSIAIRGRAEIENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  ++
Sbjct: 297 NKNGIRIYIELKKDIVAEVVLNQIYSCTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           + R  V+  R+ + +     +  IL GL IA  NIDEII II+    P            
Sbjct: 356 SFREVVITNRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSW 415

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 + S TE Q  AIL +RL+ L  +E+ +++ +L NL  E
Sbjct: 416 DALNILPLVKLVDDKAMLNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATE 475

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +  ++L S ++    +  E+ +VKE F+           F +         +  +   
Sbjct: 476 ITEYLNILGSRERLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVT 535

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               +        R+ K      S L  ++ D         T   +L  S  G+ Y+L  
Sbjct: 536 LGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKL 595

Query: 578 GNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
             L      G+   +  ++ L  ++ I                 ++  ++KGN    +  
Sbjct: 596 YKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLL 655

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
           +       GK  +++  ++K+  V     D H+ +  ++ K L F ++ +    SR   G
Sbjct: 656 DFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRTSDG 715

Query: 687 VRLQSYKDGGISDVICFK------------------------------------------ 704
           VR     +      +                                             
Sbjct: 716 VRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEEFNSEELGVDLTAE 775

Query: 705 -----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 SILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 5/105 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           + +S   +L V+  G              R G   + +   +K   +  V+ V   D + 
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  + KL+   ++ +    R   GV L    DG           
Sbjct: 840 LITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAE 884



 Score = 57.5 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 67/236 (28%), Gaps = 60/236 (25%)

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI-- 631
            +   +LL  +      ++ I L+ +  ++          +L+ +  G A       +  
Sbjct: 648 NIRRSDLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRV 707

Query: 632 -IANTRKGKTFLKVSSEEKMKLVVKVTG-------------------------------- 658
             + T  G   ++++ ++ +  +  + G                                
Sbjct: 708 IKSRTSDGVRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEEFNSEE 767

Query: 659 -----------------DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD--GGIS 698
                            + +  V EN      S        RG  G+      D  G + 
Sbjct: 768 LGVDLTAESILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVV 827

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
            V+  K+ + L  I ++G+            +  R   G  + +     G K +S+
Sbjct: 828 GVMPVKMDDELMLITNSGK--LIRCKLETVRITGRNTSGVTLFRLDD--GEKVVSA 879


>gi|85716508|ref|ZP_01047479.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A]
 gi|85696697|gb|EAQ34584.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A]
          Length = 913

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 265/859 (30%), Positives = 402/859 (46%), Gaps = 122/859 (14%)

Query: 6   ISNSNT------LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           +S+S             ++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++
Sbjct: 1   MSDSEDTKPGEPPAPSGIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM E G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG
Sbjct: 61  AMHENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD AAA RYTE+R+T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG
Sbjct: 121 SVDGDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +A +ALID+P +SI+ L+  I GPDFPTGGII+  R+ I
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACVALIDDPALSIDDLINIIPGPDFPTGGIIL-GRQGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y LGRG   +R +  ++ + +    IV++EIPYQV K+ ++E+IAEL+  K+I  + 
Sbjct: 240 RSAYHLGRGSIVMRGKVSIDTIRKDREAIVISEIPYQVNKASMVERIAELVREKKIEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  +   V+    R   P++++  ++  + ++T F  NM  L     PQ+M L  
Sbjct: 300 DLRDESDREGFRVVVELKRDAVPEVVLNQLYRFTPLQTNFGANMVALD-AGRPQLMNLKD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L  ++A R +V+ RR+ F +     R  IL GL IA  NIDEII +IR    P     +
Sbjct: 359 LLTLFIAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARET 418

Query: 420 RF-----------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                           L+  Q  AIL+LRL+ L  L   +I  E
Sbjct: 419 LMSRDWPAKDVAAMITLIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           LD L  E      +L S  +    I  E+  VK  F+       RRT   E         
Sbjct: 479 LDKLAIEIADYLDILRSRARVQAIIKTELDAVKSEFATP-----RRTVIVEQEGE---VE 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I++E + V +S+ G+++          K      S +  ++ D +     A T   
Sbjct: 531 DEDLIQREDMVVTVSHAGYVKRVPLSAYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTP 590

Query: 563 ILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KL 614
           +L  S+ G+ Y      L        G+A+  ++ L+  + I T               +
Sbjct: 591 VLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWAALDV 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  ++ G     + S+ +   R G   +K+   E +  V   T  D V +     + + F
Sbjct: 651 MFATTSGTVRRNKLSDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVLLTAAGGQCIRF 710

Query: 674 SIDQIPEM-SRGK-GVRLQSYKDGGISDVICF---------------------------- 703
            +  +     R   GVR  +   G     +                              
Sbjct: 711 PVTDVRVFSGRTSMGVRGIALAKGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGE 770

Query: 704 -------------------KICEGLTW---------IDSAGRSYNRSENDLLGWLGKRGG 735
                               + EG            +    + Y +  +     +  RGG
Sbjct: 771 DIEPEEATPEADEAAHTDLSLPEGRYVEMGAAEQFVLTVTAQGYGKRSSSFEFRVSGRGG 830

Query: 736 VGSLV--PKGFPRSGKFLS 752
            G     P      G  ++
Sbjct: 831 KGIRATDPTKLGEIGHLVA 849



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDH 660
           +  +   +L V+++G        E   + R GK        K+     +     V   D 
Sbjct: 799 MGAAEQFVLTVTAQGYGKRSSSFEFRVSGRGGKGIRATDPTKLGEIGHLVAGFPVEMSDQ 858

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
           + +V +  +L+   ++ I   SR  KGVR+ +  D      +     +G 
Sbjct: 859 IMLVSDGGQLIRVPVEGIRITSRASKGVRVFNTADDEHVVSVEHIREDGE 908



 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 46/214 (21%), Gaps = 64/214 (29%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE---IIANTRKGKTFLKVSSEEKM 650
           + L   + IV   +      +L+ ++ G       ++       T  G   + ++  +++
Sbjct: 678 MKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSGRTSMGVRGIALAKGDRV 737

Query: 651 KLV------------------------VKVTGDH-------------------------- 660
             +                           TG+                           
Sbjct: 738 ISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADEAAHTDLSLPEGRYV 797

Query: 661 --------VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD--VICFKICEGL 709
                   V  V         S  +     RG KG+R       G     V  F +    
Sbjct: 798 EMGAAEQFVLTVTAQGYGKRSSSFEFRVSGRGGKGIRATDPTKLGEIGHLVAGFPVEMSD 857

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             +  +              +  R   G  V   
Sbjct: 858 QIMLVSDGGQLIRVPVEGIRITSRASKGVRVFNT 891


>gi|225619931|ref|YP_002721188.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1]
 gi|225214750|gb|ACN83484.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1]
          Length = 834

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 244/765 (31%), Positives = 406/765 (53%), Gaps = 28/765 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S     + + V  +S+   L E YL YA+S I  RA+PD+RDG KPVHRRI++AM +  L
Sbjct: 17  STLTKDILKRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANL 76

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                +KKSA  VGEV+ + HPHGD +VY ++VR+AQ F  RY L+ GQGNFG+ID D  
Sbjct: 77  THDKPYKKSAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPP 136

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEARMT+ AE +L  ++++ V F   +++  +EP V P+  P LL NG+ GIA+G
Sbjct: 137 AAMRYTEARMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIG 196

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++P HN++E+  A +  ID+ +  I+ L+ Y+ GPDFPT G I+  +E I E+Y  G
Sbjct: 197 MATNMPPHNLKEVVNAIVYYIDHQDAEIKDLMRYVQGPDFPTAG-IIYGKEGIKEAYTTG 255

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +G  ++RAR  VEE  R    IVV E+PY V K+ L EKIA+L+   +I  + DIRDES+
Sbjct: 256 KGRIKLRARLEVEETKRDREAIVVKELPYGVVKTTLHEKIADLVKQGKIEGVADIRDESS 315

Query: 307 EDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    + +   +++  ++  +D+ET F +    L     P+V+ L  ++K ++
Sbjct: 316 NRAGIRLIIELKKGVATQIVLNQLWKHTDLETTFGIINLALV-NGEPKVLNLKELIKYFV 374

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR EV+ +R+ + +     +  IL+GLLIA  NI+E+I IIR  +     +  +++RF 
Sbjct: 375 DHRVEVITKRTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNRFK 434

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++ L+ L  LE+ +I+ EL  L       + LL   ++    I  E++++
Sbjct: 435 LSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLAHPEKILAVIKDELKKI 494

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--- 539
            E +        RR+     +       ++ +I  E + V I+ +G+I+ + + S     
Sbjct: 495 SEKYGD-----DRRSEIIGKTND-TEIDEEDLIHDEDVAVSITTQGFIKRVPASSYRTQG 548

Query: 540 -----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +     +    ++    A T D + + +  GKA+ +    +   S    G++I+ 
Sbjct: 549 RGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALSKISQGKSIKF 608

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +++L   + I + F    +D    +++V+  G    +E   +    ++G   L + + ++
Sbjct: 609 ILNLAPEEKITSYFTVSEFDPKQSIIMVTKMGTIKKMELKHLENAKKRGILALTLENNDE 668

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  V TGD   +       L  + ++I +M R   GV+  S  D  I  V    I +
Sbjct: 669 LVAVSPVQTGDDFIMTTAAGLALRITEEKIRKMGRAAAGVKGISLDDDDI-CVSGNAIHK 727

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           G + I        +  +     +  RGG G +  K   ++G  +S
Sbjct: 728 GESLIVITENGIGKRLSSKQFNVKGRGGKGQIYIKPDNKTGNVVS 772



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 63/182 (34%), Gaps = 6/182 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
            +    + AL  +  D L       T D  ++ +  G A  +    +        A    
Sbjct: 652 NAKKRGILALTLENNDELVAVSPVQTGDDFIMTTAAGLALRITEEKIRKMGRAA-AGVKG 710

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I L+ +   V+         L+V++  G    +   +     R GK  + +  + K   V
Sbjct: 711 ISLDDDDICVSGNAIHKGESLIVITENGIGKRLSSKQFNVKGRGGKGQIYIKPDNKTGNV 770

Query: 654 VKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           V V      D + VV  +   +    D IPE+ R  KGV++ +  DG     +     + 
Sbjct: 771 VSVKTVGDKDEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGARVSDLAVVPADN 830

Query: 709 LT 710
             
Sbjct: 831 EE 832


>gi|262197653|ref|YP_003268862.1| DNA gyrase subunit alpha [Haliangium ochraceum DSM 14365]
 gi|262081000|gb|ACY16969.1| DNA gyrase, A subunit [Haliangium ochraceum DSM 14365]
          Length = 891

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 245/784 (31%), Positives = 380/784 (48%), Gaps = 57/784 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV  V++   +   ++ YA+S I  RA+PD RDG KPVHRRI+ A   +   +   + K 
Sbjct: 6   NVTPVAIEKEMRSSFMDYAMSVIISRALPDARDGLKPVHRRILFAQKGLSNYWNRPYLKC 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD SVYD+LVR+AQ F  RY L+ GQGNFG+IDGD  AA RYTE R
Sbjct: 66  ARIVGDVIGKYHPHGDSSVYDALVRMAQDFSMRYELVDGQGNFGSIDGDPPAAMRYTECR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  +D++ VD++  Y++++ EP V P+K PNLL NG SGIAVGMAT+IP HN
Sbjct: 126 MARLASDLLADLDKETVDWQPNYDDKELEPTVLPTKVPNLLLNGASGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A +AL+++P++  E+L E + GPDFPTGGII   R  I  ++ LGRG   +R R
Sbjct: 186 LGEILDATMALMEDPDLPEEELAEIVPGPDFPTGGIIHG-RGGIRAAHTLGRGAVVIRGR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              E V +    IVVTE+P+ V KSR IE  A L+  KRI  + DIRDES      V+F 
Sbjct: 245 TQFETVRKERKAIVVTEMPFMVNKSRWIETTAHLVRDKRIDGISDIRDESDRKGIRVVFE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++ ++F ++ ++T F +NM  +     PQV+ L   L+ ++ HRR V+ RR
Sbjct: 305 LKRDANEQVVLNNLFKMTALQTSFNVNMLAIVD-GRPQVLSLRSALQVFIEHRRTVVRRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------------- 415
             F ++    R EI++GL +A + ID +I IIR                           
Sbjct: 364 CLFELRQARERREIVEGLGLAVMQIDRVIEIIRTSKDTDEAKARLMSERMMGLDGFLERA 423

Query: 416 ----------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            L+  Q  AIL++RL  L  LE  ++++E   L    + ++ +L
Sbjct: 424 GRPADEVEAVRTAGFVHLSARQAQAILDMRLGRLTGLEREKVEAEYRELWEITDYLEGIL 483

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               +    I  E+RE+++ ++       RRT   +        L + +I+ E + V  +
Sbjct: 484 GDDVKLRGVIVDELREMRDQYADP-----RRTEIVDQEGE---ILDEQLIKVEDMVVTRT 535

Query: 526 NRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            RG+++                +      + D +     A T D +L+ +  G+ Y    
Sbjct: 536 RRGYVKRTALDEYSAQGRGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGRVYQKKV 595

Query: 578 GNLLSGRGHGE--AIQLLID-LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI 631
             L SG    +      +I+ L  ++ +V       +       + +  G       +  
Sbjct: 596 YELPSGSRISKGRPFVNVIEALQPDEYVVGMLPVKEFTDDLSAFMATRMGTVKKTVAAAF 655

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
                 G   + +   +++  V     D  V +V +  + + F  DQ+  M R  +GVR 
Sbjct: 656 SRIRVTGIKAIGIDDGDELVEVRLTRPDMDVLLVTKRGQSIRFQEDQVRPMGREARGVRG 715

Query: 690 QSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                G  +  +  F+       +      Y +           RGG G +  K   R+G
Sbjct: 716 IGLAGGDAVVGMSVFERDCEDAILTVCENGYGKRTLLSAYSTQGRGGKGLITIKTTERNG 775

Query: 749 KFLS 752
               
Sbjct: 776 PVSG 779



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGD 659
           + F  D    +L V   G       S      R GK  + + + E+   +  V  V   D
Sbjct: 728 SVFERDCEDAILTVCENGYGKRTLLSAYSTQGRGGKGLITIKTTERNGPVSGVRLVGEDD 787

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGIS 698
           HV ++    KL+   +  IP  SR  +GVRL     G   
Sbjct: 788 HVIMISSTGKLIRMRVRDIPVQSRATQGVRLMRLDPGEQV 827


>gi|317054742|ref|YP_004103209.1| DNA gyrase subunit A [Ruminococcus albus 7]
 gi|315447011|gb|ADU20575.1| DNA gyrase, A subunit [Ruminococcus albus 7]
          Length = 836

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 233/751 (31%), Positives = 388/751 (51%), Gaps = 18/751 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E N+    +   ++E +L Y+++ I  RA+PD+RDG KPVHRRI++ M E GL    A
Sbjct: 1   MDEYNLLNQDVESIMKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K A  VG V+G+ HPHGD SVYD+LVRLAQ F  RYPL+ G GNFG++DGD  AAYRY
Sbjct: 61  YRKCADTVGSVLGRYHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++A  +L  + +D VDF+  Y++   EP V PS+FPN+L NG  GIAVGMAT+I
Sbjct: 121 TEAKMAKMAVNMLTDIKKDTVDFQSNYDDRLQEPCVLPSRFPNILCNGAVGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ E    +I NP+ ++++L++ I GPDFPTGG I+  R  I  +Y  GRG   
Sbjct: 181 PPHNLHEVIEGMKIVIQNPDCTLDELMQAIKGPDFPTGG-IIMGRSGIRAAYGTGRGKIT 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R++  +EE+  G  CIVVTEIPY V K++L+E IA L+  KR+  + D+RDE++ D   
Sbjct: 240 LRSKTSIEEIK-GRNCIVVTEIPYMVNKAKLVESIAGLVKDKRVEGIHDLRDETSRDGMR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  +P +++  +F  + ++    + +  L    +P+++ L  IL+E++  +  V
Sbjct: 299 IVIELKKDANPQVVLNKLFSYTQLQDSVGVILLALV-NGIPKILTLKQILQEYIDFQVSV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I I++N            +RF LT+ Q 
Sbjct: 358 IRRRTEFDLKKAKEREHILQGLVIALDNIDEVIEIMKNSKSIPEAKQKLCTRFGLTDVQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           D I  + L  L  +E  +I  EL  + A    ++ +L + ++ ++ I  E+  ++E F  
Sbjct: 418 DHIAQMTLGRLTGMERQKIIDELAEITATVADLEDILANEQRVFDIIIEEVEAIQEKFGD 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                    +            +  +       +        ++       ++ +  +E 
Sbjct: 478 ERRTQIENVSGEVDIEDLIPVEESVVTYTNVGYIKRMPISVYKAQNRGGKGVTGMKQRED 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-IVTAFV 607
           D +       + D IL ++T G AY +    L  G      + +   L  + D ++ A +
Sbjct: 538 DCITEMSVCSSHDNILFITTKGIAYKMKCYELPEGSKASRGVNIKNLLELSDDNLIAAMI 597

Query: 608 ----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVA 662
               +D    +++V+ +G       S      + G   + +   +++  V    G + + 
Sbjct: 598 KVEDFDDDKYIVMVTKRGKIKRTPLSAYKNVRKNGLIAIGLDEGDEIAGVRLTGGQNELL 657

Query: 663 VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +   N   +  S + +  MSR   GVR    ++G     +  +I EG T +  +     R
Sbjct: 658 IATHNGMAIRISENDVRVMSRTAHGVRAIKLREGDYVVSMA-RIREGATVLTVSETGLGR 716

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +  RGG G L      ++G+   
Sbjct: 717 RVALENYPIRHRGGHGVLNY----KNGEVCG 743



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 61/486 (12%), Positives = 143/486 (29%), Gaps = 22/486 (4%)

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + A             I+   I +QV   R   +       +R  +L+ +        
Sbjct: 328 VILLALVNGIPKILTLKQILQEYIDFQVSVIRRRTEFDLKKAKEREHILQGLVIALDNID 387

Query: 310 RIVLFPKNRSLDPDLLMESI--FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            ++   KN    P+   +    F L+D++      M +  +  + +   +D + +     
Sbjct: 388 EVIEIMKNSKSIPEAKQKLCTRFGLTDVQADHIAQMTLGRLTGMERQKIIDELAEITATV 447

Query: 368 R--REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
               ++L          I+    I +          E ++   + +   PV  S  + T 
Sbjct: 448 ADLEDILANEQRVFDIIIEEVEAIQEKFGDERRTQIENVSGEVDIEDLIPVEESVVTYTN 507

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                 + + +    +    +  + +     +     S+ +S           I    + 
Sbjct: 508 VGYIKRMPISVYK-AQNRGGKGVTGMKQREDDCITEMSVCSSHDNILFITTKGIAYKMKC 566

Query: 486 FSKSTDLGRRRTTFCEVSRA------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
           +         R    +            A ++    + +   V+++ RG I+     +  
Sbjct: 567 YELPEGSKASRGVNIKNLLELSDDNLIAAMIKVEDFDDDKYIVMVTKRGKIKRTPLSAYK 626

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 L A+   EGD +         + +L+ + +G A  +   ++             
Sbjct: 627 NVRKNGLIAIGLDEGDEIAGVRLTGGQNELLIATHNGMAIRISENDVRVMSRTA-HGVRA 685

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I L     +V+         +L VS  G    V         R G   L   +  ++  +
Sbjct: 686 IKLREGDYVVSMARIREGATVLTVSETGLGRRVALENYPIRHRGGHGVLNYKNG-EVCGI 744

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLT 710
             V   D + ++  +  ++      I  M R  +GVRL     +  +      +  +   
Sbjct: 745 KVVDEEDDIIMISSDGIVIRLRACDISVMGRYSRGVRLMKVAGENKVVTFTRTEHDDEAE 804

Query: 711 WIDSAG 716
             +   
Sbjct: 805 IAEVEK 810


>gi|161511141|ref|NP_539801.2| DNA gyrase subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260565641|ref|ZP_05836125.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991179|ref|ZP_06103736.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260151709|gb|EEW86803.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263001963|gb|EEZ14538.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 922

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/851 (30%), Positives = 408/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM 
Sbjct: 1   MNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD 
Sbjct: 61  LAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  
Sbjct: 181 GMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES
Sbjct: 240 GRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++
Sbjct: 300 DREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P            
Sbjct: 359 AFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRW 418

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  
Sbjct: 419 PAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E      +L S  +  N +  E+  V++ F+       RRT   E+         + +I 
Sbjct: 479 EIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIA 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+I+          +      S +  KE D +     A+T   +L  S+
Sbjct: 531 REDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSS 590

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G  Y      L   + +  G+A+  ++ L   + I T               ++  +++
Sbjct: 591 RGIVYKEKLWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTR 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F +  +
Sbjct: 651 GTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDV 710

Query: 679 PEM-SRGK-GVRLQSYKDGGISDVICF---------------------------KICEGL 709
                R   GVR  +  +G     +                                + +
Sbjct: 711 RVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDI 770

Query: 710 --------------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                     T +  +   Y +  +     +  RGG G      
Sbjct: 771 VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDT 830

Query: 744 --FPRSGKFLS 752
                 GK ++
Sbjct: 831 SKTDEIGKLVA 841



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 795 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 854

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 855 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 907


>gi|289449779|ref|YP_003475556.1| DNA gyrase subunit A [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184326|gb|ADC90751.1| DNA gyrase, A subunit [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 867

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 223/754 (29%), Positives = 377/754 (50%), Gaps = 18/754 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N+  V L   + + ++ YA+S I +RA+PD+RDG KPVHRRI+ +M   G      ++K
Sbjct: 24  NNIVPVDLEQEMRKSFIDYAMSVISDRALPDIRDGLKPVHRRILFSMFSQGFTPDKPYRK 83

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A  VG V+G  HPHGD +VYDS+VRLAQ F  R+ ++ G GNFG+ DGD  AAYRYTEA
Sbjct: 84  CATTVGNVLGHFHPHGDAAVYDSMVRLAQDFSMRHTMVDGHGNFGSRDGDPPAAYRYTEA 143

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A  +++ ++++ VDF+  ++E++ EP+V PS+FPNLL NG++GIAVGMAT IP H
Sbjct: 144 RLTKIAVEMMRDINKNTVDFKPNFDEQEMEPIVLPSRFPNLLVNGSTGIAVGMATDIPPH 203

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A +  I+NP+  +E ++E + GPDFPTGG I+     I E+YR G+G   VR+
Sbjct: 204 NLGETIDAVVMRINNPDCDLEDIMEILPGPDFPTGGTIL-GLSGIRETYRTGKGRITVRS 262

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-VL 313
              +E++      IVV ++PY V K+RLIEK+A+L+  KRI  +  IRDES  +  I ++
Sbjct: 263 AASIEDMPNNRHKIVVHDLPYMVNKARLIEKMADLVKEKRIDGISMIRDESDRNEEIRIV 322

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM----GRVPQVMPLDGILKEWLAHRR 369
               R  +P +++  ++ ++ ++  F  NM  L         P+V+ L   L  ++AH++
Sbjct: 323 IELKRDANPQVVLNRLYKMTQLQDNFNANMLALVPDAQGRYEPKVVTLLDCLDHYIAHQK 382

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ F +     R  I++GLL A  NIDE+I IIR+    +        RF  +  
Sbjct: 383 SVVLRRTKFDLDKALARQHIVQGLLKAIDNIDEVIRIIRSSSNEETAKQALCERFDFSIR 442

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q   I+++RL  L  LE  +++ ELD L+ + E  + ++N        I  E+ ++K  +
Sbjct: 443 QAQHIVDMRLGRLTALERERLQKELDELIVKIEYFNRIINESSLLNQVICDELTDLKTRY 502

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHF 545
           +          +  E    +    ++ +I       V        +        +S L  
Sbjct: 503 ANKRRTVIEPYSLDEFEDEELVKEEEVVITLTHFGYVKRQPVDTYQQQHRGGRGISGLQT 562

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ----- 600
           +E D ++  +   T D +L  +  G+ + L    +       +   ++  L   +     
Sbjct: 563 REDDFVETLVTTSTHDHLLFFTNTGRVFRLKGYQIPEAGRQAKGQAIVNLLQLVEGEKVR 622

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GD 659
            ++T   ++    LL+ +++G        E     + G   + +  ++++  V      +
Sbjct: 623 TVITVHEFNREDYLLMATARGMIKKTSLYEYANIQKNGLIAINLRPDDEVIGVKVSRLHE 682

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +       L F  + I    R   GV     +      +    + E    +  +   
Sbjct: 683 EVILATAGGYSLRFDTNDIRNTGRNTFGVSGIKLRHSDKV-IGMAAVDEERHLLVISKNG 741

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +        +  RGG G +  K   ++G    
Sbjct: 742 YGKRSEFNEYRIQNRGGKGLITYKPTEQTGDLAG 775



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 21/198 (10%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +I               L A++ +  D +     +   + ++L +  G +      ++ +
Sbjct: 644 MIKKTSLYEYANIQKNGLIAINLRPDDEVIGVKVSRLHEEVILATAGGYSLRFDTNDIRN 703

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
              +   +   I L H+  ++     D    LLV+S  G     E +E     R GK  +
Sbjct: 704 TGRNTFGV-SGIKLRHSDKVIGMAAVDEERHLLVISKNGYGKRSEFNEYRIQNRGGKGLI 762

Query: 643 KVSSEEKMKLVVKVTGDHVAVVG-----------ENRKLLIFSIDQIPEMSR-GKGVRLQ 690
                E+       TGD   +             +   ++  +  +IP +SR  KGVRL 
Sbjct: 763 TYKPTEQ-------TGDLAGIASINDEDDIIIINDAGIVIRVATKEIPILSRVTKGVRLM 815

Query: 691 SYKDGGISDVICFKICEG 708
               G I D+   +  + 
Sbjct: 816 R-TAGQIVDLAVVQHDDE 832


>gi|325292861|ref|YP_004278725.1| DNA gyrase subunit A [Agrobacterium sp. H13-3]
 gi|325060714|gb|ADY64405.1| DNA gyrase subunit A [Agrobacterium sp. H13-3]
          Length = 930

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 241/840 (28%), Positives = 396/840 (47%), Gaps = 113/840 (13%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKFHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLHEPVVIPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L++ I GPDFPTG  ++  R  I  +Y  GRG   +R R 
Sbjct: 196 SEVIDGCIALIDNPAIELLELMQIISGPDFPTGA-LIMGRSGIRSAYETGRGSVIMRGRA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TE+PYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 TIEPMRGDREQIIITEVPYQVNKATMIEKMAELVKEKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  I+  + ++T F  NM  L+ G  P+ M L  +L+ +++ R +V+ RR+
Sbjct: 315 KRDANAEVILNQIYRYTPLQTSFGCNMVALN-GGKPEQMTLLDMLRAFVSFREDVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------------------ 412
            + ++    R  +L GL I+  NIDE+I +IR+                           
Sbjct: 374 KYLLRKARDRAHVLVGLAISVANIDEVIRVIRHAPDPASAREELMTRRWPAQDVESLIRL 433

Query: 413 -----PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                 +      ++L+E Q  AIL LRL  L  L   +I  EL+ + AE  +   +L+S
Sbjct: 434 IDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLEILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  +++ F        RR+   E          + +I +E + V +S+ 
Sbjct: 494 RLRIMQIVKDELIAIRDEFGTP-----RRSEIVE---GGPDMDDEDLISREDMVVTVSHL 545

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  ++ D +     A+T   +L  S+ G  Y      
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWR 605

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L   + +  G+A+  ++ L   + I T               ++  +++G     +  + 
Sbjct: 606 LPIGTPQSKGKALINMLPLEPGERITTIMPLPEDETTWETLDVMFSTTRGTVRRNKLGDF 665

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +D +     R   GV
Sbjct: 666 VQVNRNGKIAMKLEEEGDEILSVETCTDQDDVLLTTALGQCIRFPVDDVRVFAGRNSVGV 725

Query: 688 RLQSYKDGGISDVICFK------------------------------------------- 704
           R  +  DG     +                                              
Sbjct: 726 RGINMADGDRIISMTIVGHVEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVAEEGE 785

Query: 705 ---------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS--GKFLSS 753
                           +  + + Y +  +        RGG G         +  G+ +++
Sbjct: 786 LSEERYQELKAREEFVLTVSEKGYGKRSSSYDFRTSGRGGKGIRATDTSKTTEIGELVAA 845



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 40/118 (33%), Gaps = 11/118 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        +   + R GK              ++     V  GD + +V
Sbjct: 798 EEFVLTVSEKGYGKRSSSYDFRTSGRGGKGIRATDTSKTTEIGELVAAFPVDEGDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +  +L+   ++ I   SR  KGV + S  KD  +  V      EG      A     
Sbjct: 858 SDGGQLIRVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEGDE---EAENGNG 912


>gi|188584270|ref|YP_001927715.1| DNA gyrase, A subunit [Methylobacterium populi BJ001]
 gi|179347768|gb|ACB83180.1| DNA gyrase, A subunit [Methylobacterium populi BJ001]
          Length = 908

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 257/842 (30%), Positives = 388/842 (46%), Gaps = 93/842 (11%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D+          ++K VS+   +   YL YA+S I  RA+PD RDG KPVHRRI+++  
Sbjct: 5   KDDTGAGTPPPATDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSAF 64

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G      + KSARIVG+VIG+ HPHGDQS+YD+LVR+AQ F  R  LI GQGNFG++D
Sbjct: 65  ESGHLPERKYVKSARIVGDVIGQYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVD 124

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE+R+ + A  +L  +D++ VDF+  Y++   EP V P++FPNLL NG  G
Sbjct: 125 GDPPAAMRYTESRLARPAISLLTDIDKNTVDFQSNYDDSREEPTVLPARFPNLLVNGAGG 184

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A +ALID+P ++IE L E + GPDFPTGG+I+  R    ++
Sbjct: 185 IAVGMATNIPPHNLGELVDACVALIDDPALTIEALNEIVPGPDFPTGGMIL-GRAGTRQA 243

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +RAR  VEE+ +    ++ TEIPYQV K+ LIEKIAEL+  KRI  + D+R
Sbjct: 244 YTTGRGSIIMRARSHVEELRKEREALIFTEIPYQVNKATLIEKIAELVKDKRIEGISDLR 303

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   ++    R    D+++  ++  + ++T F  NM  L+ G  P++M L  +L 
Sbjct: 304 DESDRDGMRIVVEIKRDAMADVVLNQLYRYTPLQTSFGANMVALN-GGRPELMNLKDLLL 362

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--- 419
            +   R EV+ RR+ F +     R  +L GL IA  NIDE+I +IR    P     +   
Sbjct: 363 AFNDFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREALMA 422

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q  AIL+LRL+ L  L   +I  EL  
Sbjct: 423 RDWPAHDIAPLIALVDDPRHRVADDGTYRLSETQARAILDLRLQRLTALGRDEIGDELKK 482

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E      +L S  +    +  E+ EV+E+F+         + F        A     
Sbjct: 483 LADEIADYLDILRSRARIQAIVKHELAEVRELFATPRKTEIIDSDFSVEDEDLIAREDMV 542

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V        RS K      S +  ++ D +     A+T   +L  S  G+AY
Sbjct: 543 VTVSHAGYVKRVPLSTYRSQKRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSDQGQAY 602

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHN-QDIVTAFVYDSTC------KLLVVSSKGNAF 624
                 L   +    G+A+  ++ L +  + I T               ++  ++ GN  
Sbjct: 603 KEKVWRLPVAAPNARGKALVNILHLQNEGERITTIMPLPEDEASWETLDVMFATASGNVR 662

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPE-MS 682
             + S+ +   R GK  +K+   + +  V     D  V +     + + F ++ +     
Sbjct: 663 RNKLSDFVQVNRNGKIAMKLDPGDHIVHVEICRPDQNVLLTTALGQCIRFPVEDVRVFKG 722

Query: 683 R-GKGVRLQSY-KDGGISDVICFKI----------------------------------- 705
           R   GVR  +  KD  +  +                                        
Sbjct: 723 RDSTGVRGINLGKDDKVISMAILNAFDASPEERAGYLKMRRAVIGDSGEEGTENGEAEEA 782

Query: 706 --------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                               +  + R + +  +        RGG G    +   R+G  +
Sbjct: 783 SAAAISPERYTQMGAAEQFVLTLSERGFGKRSSSYEYRTSGRGGKGITAMRVNARNGNLV 842

Query: 752 SS 753
           +S
Sbjct: 843 AS 844



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 5/100 (5%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           +  +   +L +S +G        E   + R GK    +    +   +     V   D + 
Sbjct: 795 MGAAEQFVLTLSERGFGKRSSSYEYRTSGRGGKGITAMRVNARNGNLVASFPVEASDQIM 854

Query: 663 VVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
           +V    +L+   +D I  + R  +GV + +         +
Sbjct: 855 LVTNAGQLIRVPVDDIRIVGRASQGVTVFNTDKAERVVSV 894


>gi|295129539|ref|YP_003580202.1| DNA gyrase, A subunit [Propionibacterium acnes SK137]
 gi|291376682|gb|ADE00537.1| DNA gyrase, A subunit [Propionibacterium acnes SK137]
 gi|313771056|gb|EFS37022.1| DNA gyrase, A subunit [Propionibacterium acnes HL074PA1]
 gi|313811779|gb|EFS49493.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA1]
 gi|313832313|gb|EFS70027.1| DNA gyrase, A subunit [Propionibacterium acnes HL007PA1]
 gi|313832773|gb|EFS70487.1| DNA gyrase, A subunit [Propionibacterium acnes HL056PA1]
 gi|314975207|gb|EFT19302.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA1]
 gi|314977621|gb|EFT21716.1| DNA gyrase, A subunit [Propionibacterium acnes HL045PA1]
 gi|314985194|gb|EFT29286.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA1]
 gi|315097153|gb|EFT69129.1| DNA gyrase, A subunit [Propionibacterium acnes HL038PA1]
 gi|327332509|gb|EGE74244.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2]
 gi|327334568|gb|EGE76279.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1]
 gi|327446713|gb|EGE93367.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA2]
 gi|327448845|gb|EGE95499.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA1]
 gi|328759821|gb|EGF73412.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1]
          Length = 891

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 232/791 (29%), Positives = 376/791 (47%), Gaps = 49/791 (6%)

Query: 1   MGVDNISNSNTLVEEN---------VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+     +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G  ++  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGA-LIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+S+    + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VD-NVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +           + E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+ +          K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSGRGHGEAIQ-----LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               L                  +       ++T   YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-K 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFK----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           GV    ++       +         +      + G  Y +           RGGVG    
Sbjct: 711 GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAM 770

Query: 742 KGFPRSGKFLS 752
                 G  + 
Sbjct: 771 ALSEERGSLVG 781


>gi|86150936|ref|ZP_01069152.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85842106|gb|EAQ59352.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 862

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 245/786 (31%), Positives = 400/786 (50%), Gaps = 50/786 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       I++ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES ++   V+
Sbjct: 247 AKTHI-EKKTNKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   + I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHV-- 661
             +D +  L   +  G       SE       G   + +   +++   + V    D +  
Sbjct: 605 TDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFA 664

Query: 662 ---------------------------------AVVGENRKLLIFSIDQIPEMSR-GKGV 687
                                              V +    + F + ++ E+ R  +GV
Sbjct: 665 TGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGV 724

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 725 TAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 784

Query: 747 SGKFLS 752
           +   +S
Sbjct: 785 TKDLIS 790


>gi|157415284|ref|YP_001482540.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386248|gb|ABV52563.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747926|gb|ADN91196.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni M1]
 gi|315932157|gb|EFV11100.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 327]
          Length = 863

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 246/786 (31%), Positives = 400/786 (50%), Gaps = 50/786 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES ++   V+
Sbjct: 247 AKTHI-EKKTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   + I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHV-- 661
             +D +  L   +  G       SE       G   + +   +++   + V    D +  
Sbjct: 605 TDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFA 664

Query: 662 ---------------------------------AVVGENRKLLIFSIDQIPEMSR-GKGV 687
                                              V +    + F + ++ E+ R  +GV
Sbjct: 665 SGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGV 724

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 725 TAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 784

Query: 747 SGKFLS 752
           +   +S
Sbjct: 785 TKDLIS 790


>gi|88596044|ref|ZP_01099281.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562643|ref|YP_002344422.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|417099|sp|Q03470|GYRA_CAMJE RecName: Full=DNA gyrase subunit A
 gi|144206|gb|AAA23028.1| DNA gyrase A [Campylobacter jejuni]
 gi|88190885|gb|EAQ94857.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360349|emb|CAL35145.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284926257|gb|ADC28609.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927967|gb|EFV07289.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 863

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 246/786 (31%), Positives = 400/786 (50%), Gaps = 50/786 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES ++   V+
Sbjct: 247 AKTHI-EKKTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   + I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHV-- 661
             +D +  L   +  G       SE       G   + +   +++   + V    D +  
Sbjct: 605 TDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFA 664

Query: 662 ---------------------------------AVVGENRKLLIFSIDQIPEMSR-GKGV 687
                                              V +    + F + ++ E+ R  +GV
Sbjct: 665 TGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGV 724

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 725 TAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 784

Query: 747 SGKFLS 752
           +   +S
Sbjct: 785 TKDLIS 790


>gi|294789626|ref|ZP_06754860.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453]
 gi|294482427|gb|EFG30120.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453]
          Length = 911

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 237/838 (28%), Positives = 399/838 (47%), Gaps = 100/838 (11%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S  +    +   AVSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  
Sbjct: 3   SEIDQQFAKETIAVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKN 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++ +A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DGD+A
Sbjct: 63  NWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSVDGDAA 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM ++A  +L  ++ED V+F D Y+  + EP+V P++FP LL NG+ GIAVG
Sbjct: 123 AAMRYTEIRMAKIAHEMLADIEEDTVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MATSIP HN+++     L L+  PE  I  L++ I  PDFPTG  I      I   Y+ G
Sbjct: 183 MATSIPPHNLRDTLSGCLKLLREPETDINDLIDIIKAPDFPTGATIY-GLTGIRAGYQTG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +R++  +E +G+ S  I+V EIPYQV KS+L+EKI EL+  K +  + ++RDES 
Sbjct: 242 RGRVVIRSKTHIEPIGKNSEAIIVDEIPYQVNKSKLVEKIGELMREKTVEGIAELRDESD 301

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   ++    R+ + ++++  ++ L+ ++  F +NM  L     P+++ L  IL E+L 
Sbjct: 302 KDGTRIVIELKRNENAEVILNQLYKLTQLQDSFSINMVALVD-GQPRLLNLKQILSEFLR 360

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------- 416
           HRREV+ RR+ +R++       I +G  +A  NIDE+IA+I+                  
Sbjct: 361 HRREVVTRRTLYRLKKARAEGHIAEGKAVALSNIDEMIALIKQSVDVDSAREALLSRAWQ 420

Query: 417 -----------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                            + L++ Q  AIL + LR+L  L++ +I
Sbjct: 421 SDLVSEMLNRSDLDLTMARPEWLPENRGLQSDGYWLSDEQARAILRMSLRNLTGLDQDEI 480

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   L+A    +  +L   ++    I  E+  ++  F        RR+     +    
Sbjct: 481 IKEYKELMAIIVDLLDILAKPERVRQIIDDELVAMQTQFGDE-----RRSEI--NTFGGG 533

Query: 508 ATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I    + V +++ G+         ++ K       A   K+ D ++    A+T
Sbjct: 534 DIADEDLIPPREMVVTLTHGGYIKTRPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANT 593

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D ++  +  G+ + +    L     +  G  I  +I L  N+ +        +     +
Sbjct: 594 HDYLMCFTNLGRCHWIKVYRLPEGGRQSRGRPINNVIQLEENEKVSAILPVRDFPEDEYV 653

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
              ++ G    V+ S     + KG   + +   + +  V K +G   + +     K + F
Sbjct: 654 FFATALGVVKKVQLSAFKNVSVKGIKAIALKDGDSLVGVAKTSGSSDIMLFSNLGKAIRF 713

Query: 674 SI------------DQIP---------------EMSRGKGVR----------LQSYKD-G 695
           +             + +                 +   KG+R               + G
Sbjct: 714 NEFYNPTSNDDDESEDVSGSLNDDSDDENSDEFNLLTNKGIRPSGRGSGGLRGMRLPENG 773

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            I  ++  ++   L  + +    Y +           +GG G +      R+G+ + +
Sbjct: 774 RIVSLLVAELGSDLQVLTATQNGYGKRTPIENYSRKGKGGQGIIAIDTGERNGELVGA 831



 Score = 90.6 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 7/124 (5%)

Query: 594 IDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--- 648
           + L  N  IV+  V +  S  ++L  +  G              + G+  + + + E   
Sbjct: 767 MRLPENGRIVSLLVAELGSDLQVLTATQNGYGKRTPIENYSRKGKGGQGIIAIDTGERNG 826

Query: 649 KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++     V+  D + ++     L+   ++Q+ E  R  +GVRL +  +G     I     
Sbjct: 827 ELVGAALVSPSDDLMLITSGGVLIRTKVEQVRETGRAAQGVRLINLDEGTTLVSIERVAE 886

Query: 707 EGLT 710
           E   
Sbjct: 887 ENSD 890



 Score = 57.9 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 8/110 (7%)

Query: 642 LKVSSEEKMKL--VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDG 695
           +++    ++    V ++  D  V    +N       I+      +G +G+       ++G
Sbjct: 767 MRLPENGRIVSLLVAELGSDLQVLTATQNGYGKRTPIENYSRKGKGGQGIIAIDTGERNG 826

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +         + L  I S                  R   G  +     
Sbjct: 827 ELVGAALVSPSDDLMLITSG--GVLIRTKVEQVRETGRAAQGVRLINLDE 874


>gi|121613117|ref|YP_001000706.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005627|ref|ZP_02271385.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249145|gb|EAQ72106.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 862

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 246/786 (31%), Positives = 400/786 (50%), Gaps = 50/786 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ + S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHI-EKKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   + I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHV-- 661
             +D +  L   +  G       SE       G   + +   +++   + V    D +  
Sbjct: 605 TDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFA 664

Query: 662 ---------------------------------AVVGENRKLLIFSIDQIPEMSR-GKGV 687
                                              V +    + F + ++ E+ R  +GV
Sbjct: 665 TGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGV 724

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 725 TAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 784

Query: 747 SGKFLS 752
           +   +S
Sbjct: 785 TKDLIS 790


>gi|86152939|ref|ZP_01071144.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843824|gb|EAQ61034.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 863

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 246/786 (31%), Positives = 400/786 (50%), Gaps = 50/786 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES ++   V+
Sbjct: 247 AKTHI-EKKTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   + I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHV-- 661
             +D +  L   +  G       SE       G   + +   +++   + V    D +  
Sbjct: 605 TDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFA 664

Query: 662 ---------------------------------AVVGENRKLLIFSIDQIPEMSR-GKGV 687
                                              V +    + F + ++ E+ R  +GV
Sbjct: 665 TGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGV 724

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 725 TAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 784

Query: 747 SGKFLS 752
           +   +S
Sbjct: 785 TKDLIS 790


>gi|1346236|sp|P48371|GYRA_NEIGO RecName: Full=DNA gyrase subunit A
 gi|529408|gb|AAA82128.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 916

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 238/851 (27%), Positives = 400/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +   +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWASSLVEEMLTRSGLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKN-GVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTW 711
              +    
Sbjct: 893 VAEDESEL 900



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
                +  +I    R   G   + +   E +  + +V  D 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897


>gi|192382542|gb|ACF04292.1| GyrA [Neisseria meningitidis]
 gi|192382544|gb|ACF04293.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/851 (28%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDK 418

Query: 419 --------------------------------------SRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTWIDSA 715
              +     D++
Sbjct: 893 VAEDESELSDAS 904



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 794 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 853

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 854 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 883


>gi|94498683|ref|ZP_01305234.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. SKA58]
 gi|94421846|gb|EAT06896.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. SKA58]
          Length = 787

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 380/766 (49%), Positives = 520/766 (67%), Gaps = 21/766 (2%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D +++      + +K      AL +RYL YALSTI  R++PDLRDG KPVHRR++ AM  
Sbjct: 24  DGMTDFRDPF-DAIKDHPFDEALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRL 82

Query: 64  MGLDFGAA---------------FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           + ++ G A               +KK AR+VG+VIGK HPHGD SVYD++VRLAQ F  R
Sbjct: 83  LRMEPGGASADVLTANPARNTTAYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLR 142

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
            PL+ GQGNFGNIDGD+AAA RYTEAR+TQ A  ++ G+DE  VDFR TYN ED EP VF
Sbjct: 143 TPLVDGQGNFGNIDGDNAAAMRYTEARLTQAAADLMAGLDEGTVDFRPTYNGEDEEPEVF 202

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPT 228
           P  FPNLLANG SGIAVGMATSIP HNV E+ +AA  LID+P+     L++ + GPDFPT
Sbjct: 203 PGLFPNLLANGASGIAVGMATSIPPHNVAELIDAANLLIDDPDADHGALMQIVRGPDFPT 262

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           GG++V+S   I E+Y  GRG FR RARW  E+ GRG+W  VVTEIPYQVQKS+LIE+IA 
Sbjct: 263 GGVLVDSPSIIAEAYATGRGAFRTRARWHKEDHGRGTWIAVVTEIPYQVQKSKLIEQIAA 322

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
           LI  K++P+L D+RDES  D+RIV+ P+ R++D  +LM+S+F L+D+E RFPLN+NVL  
Sbjct: 323 LINDKKLPILADVRDESDADIRIVIEPRARTVDDQVLMDSLFRLTDLENRFPLNLNVLDS 382

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
              P+V+ L  +L EWL H+ +VL RR+  R+  I  RVE+L G +IAYLN+D +I IIR
Sbjct: 383 THTPRVLGLKPLLVEWLRHQIDVLVRRARHRLDKIAARVELLDGYIIAYLNLDRVIEIIR 442

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
            ED+PK VM+  F LT+ Q +AILN+RLRSLRKLEE +++ E D LL E+++++ L+ S 
Sbjct: 443 TEDEPKEVMMVEFGLTDRQAEAILNMRLRSLRKLEEMELRREHDELLKERDELEKLVESP 502

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +Q  ++  ++  +++ +   TDLGRRRT   E + A +    +AMIE+EPITV++S RG
Sbjct: 503 ARQRTRLKKDLAALRKRYGPETDLGRRRTLVEEAAPA-REIPLEAMIEREPITVILSERG 561

Query: 529 WIRSLKSHSVD--LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           WIR++  H        L FKEGD  + A HA+TTD++LL ++ G+ +TL +  L  GRG 
Sbjct: 562 WIRAMSGHRDLAAADTLKFKEGDGPQFAFHAYTTDKLLLATSTGRVFTLSSDKLPGGRGF 621

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G+ ++ L+D+++   IV      +   LL+ SS G  FI   ++I+A TRKGK  + V +
Sbjct: 622 GDPVRSLVDMDNEGAIVALMPARAGGDLLLASSDGRGFIAAMADIMAETRKGKQVVNVRA 681

Query: 647 EEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFK 704
             ++ +V  V    D +AV+GENRKLL+F+I ++P M+RG+GV+LQ Y+DGG+SD I F+
Sbjct: 682 GARLAVVHPVTADADSIAVIGENRKLLVFAISEMPRMARGQGVQLQRYRDGGLSDAIAFR 741

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           + +GLTW         R+E D+  W   RG  G + P GFPR  +F
Sbjct: 742 LADGLTWAMGGDSGRTRNETDMTPWKVARGAAGRMPPNGFPRDNRF 787


>gi|59801057|ref|YP_207769.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090]
 gi|240080519|ref|ZP_04725062.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|240118167|ref|ZP_04732229.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|240123715|ref|ZP_04736671.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|268596652|ref|ZP_06130819.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|268603883|ref|ZP_06138050.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|268682346|ref|ZP_06149208.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|293398920|ref|ZP_06643085.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62]
 gi|59717952|gb|AAW89357.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090]
 gi|268550440|gb|EEZ45459.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|268588014|gb|EEZ52690.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|268622630|gb|EEZ55030.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|291610334|gb|EFF39444.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62]
          Length = 916

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/851 (28%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVIRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKN-GVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTW 711
              +    
Sbjct: 893 VAEDESEL 900



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
                +  +I    R   G   + +   E +  + +V  D 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897


>gi|297200946|ref|ZP_06918343.1| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083]
 gi|297147776|gb|EDY60917.2| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083]
          Length = 865

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 242/786 (30%), Positives = 400/786 (50%), Gaps = 45/786 (5%)

Query: 1   MGVD---NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  D       +  ++ + V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+
Sbjct: 1   MADDITPATPEAGGIIAQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+   D AAA RYTE +M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL 
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIV 233
           NG++GIAVGMAT+IP HN++E+   A   ++NPE S E+    L+E I GPDFPTG  +V
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEELLDALMERIKGPDFPTGA-LV 239

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   
Sbjct: 240 VGRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDG 298

Query: 294 RIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           ++  + D+RDE S+   + ++    R     +++ +++  +D+++ F  NM  L    VP
Sbjct: 299 KVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVD-GVP 357

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           + + LD  ++ W+AH+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D 
Sbjct: 358 RTLSLDAFIRHWVAHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDT 417

Query: 413 P---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               +  ++    + E Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  
Sbjct: 418 VDIARTGLMELLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQAKITEYNEILASPV 477

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +Q   ++ E+  + E +        R+T              + +I +E I V +S  G+
Sbjct: 478 RQRGIVSAELAAIVEKYGD-----DRKTMLVPYDGDMS---IEDLIAEEDIVVTVSRGGY 529

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           ++          K     +     KE D +     + T   +L  +  G+ Y   A  L 
Sbjct: 530 VKRTKAVDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELP 589

Query: 582 S--GRGHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  G+ +  L+    ++   +I+    YD+   L++ +  G        +  +   
Sbjct: 590 DAGRDARGQHVANLLAFQPDEAIAEILAIRDYDAAPYLVLATKAGLVKKTSLKDYDSPRS 649

Query: 637 KGKTFLKVSS-----EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRG-KGV 687
            G   + +       ++++     V+ D  + ++ +  + + F+     +  M R   GV
Sbjct: 650 GGVIAINLREREDGSDDELIGAELVSADSDLLLISKKAQSIRFTASDDTLRPMGRATSGV 709

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           +  S+++G     +   +  G     +    Y +        +  RGG+G    K     
Sbjct: 710 KGMSFREGDELLSMNV-VRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDR 768

Query: 748 GKFLSS 753
           G  + +
Sbjct: 769 GSLVGA 774


>gi|163853963|ref|YP_001642006.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1]
 gi|218532904|ref|YP_002423720.1| DNA gyrase subunit alpha [Methylobacterium chloromethanicum CM4]
 gi|240141417|ref|YP_002965897.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254563932|ref|YP_003071027.1| DNA gyrase subunit A [Methylobacterium extorquens DM4]
 gi|163665568|gb|ABY32935.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1]
 gi|218525207|gb|ACK85792.1| DNA gyrase, A subunit [Methylobacterium chloromethanicum CM4]
 gi|240011394|gb|ACS42620.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254271210|emb|CAX27222.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens DM4]
          Length = 911

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 249/847 (29%), Positives = 381/847 (44%), Gaps = 96/847 (11%)

Query: 1   MGVDN--ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  DN            ++K VS+   +   YL YA+S I  RA+PD RDG KPVHRRI+
Sbjct: 1   MADDNDQPGAGTPPPATDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
            A  E G      + KSARIVG+VIGK HPHGDQS+YD+LVR+AQ F  R  LI GQGNF
Sbjct: 61  FAAHESGHLPERRYVKSARIVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGD AAA RYTE+R+ + A  +L  +D++ VDF+  Y+ E  EP V P++FPNLL N
Sbjct: 121 GSVDGDPAAAMRYTESRLAKPASALLSDIDKNTVDFQANYDGEHEEPTVLPARFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GIAVGMAT+IP HN+ E+ +A +ALID+P ++IE L E + GPDFPTGG ++  R  
Sbjct: 181 GAGGIAVGMATNIPPHNLGELIDACIALIDDPSLTIEALNEIVPGPDFPTGG-LILGRAG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             ++Y  GRG   +RA+  +EE+ +    ++ TEIPYQV K+ L+EKIAEL+  KR+  +
Sbjct: 240 TRQAYATGRGSIIMRAKSHIEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES  D   ++    R    ++++  ++  + +++ F  NM  L+ G  P++M L 
Sbjct: 300 SDLRDESDRDGMRIVVEIKRDAMAEVVLNQLYRYTPLQSSFGCNMVALN-GGRPELMNLK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            +L  +   R EV+ RR+ F +     R  +L GL IA  NIDE+I +IR    P     
Sbjct: 359 DLLLAFNDFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTARE 418

Query: 419 S-----------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
           +                              + L+E Q  AIL+LRL+ L  L   ++  
Sbjct: 419 ALMARDWPAHDIAPLIALVDDPRYRVAEDGTYRLSEIQARAILDLRLQRLTALGRDEVGD 478

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           EL  L  E      +L S  +    +  E+ EV+ +F+         + F        A 
Sbjct: 479 ELKKLADEIADYLDILRSRVRIQAIVKTELAEVRALFATPRKTEIIDSDFSVEDEDLIAR 538

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
               +       V        R+ +      S +  ++ D +     A T   +L  S  
Sbjct: 539 EDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATRDEDFVTRLFVASTHTPVLFFSDQ 598

Query: 570 GKAYTLPAGNLLS--GRGHGEAIQLLIDLNHN-QDIVTAFVYDSTC------KLLVVSSK 620
           G+AY      L        G+A+  ++ L +  + I T               ++  ++ 
Sbjct: 599 GQAYKEKVWRLPMAAPNARGKALVNILHLQNEGERISTIMPLPEDETSWDTLDVMFATAS 658

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIP 679
           GN    + S+     R GK  +K+   + +  V       +V +     + + F ++ + 
Sbjct: 659 GNVRRNKLSDFTTVNRNGKIAMKLDPGDHIVHVEICRPEQNVLLTTALGQCIRFPVEDVR 718

Query: 680 E-MSR-GKGVRLQSYKDGGISDVICFKI-------------------------------- 705
               R   GVR  +         +                                    
Sbjct: 719 VFKGRDSTGVRGINLAQDDKVISMAILNAFDASPEERAGYLKMRRAVIGDAGEAEAEPAE 778

Query: 706 -------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                                    +  + R + +  +        RGG G    +   R
Sbjct: 779 AEEASEASAISLERYNEMGAAEQFVLTLSDRGFGKRSSSYEYRTSGRGGKGITAMRVNAR 838

Query: 747 SGKFLSS 753
           +G  ++S
Sbjct: 839 NGNLVAS 845



 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 5/100 (5%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           +  +   +L +S +G        E   + R GK    +    +   +     V   D + 
Sbjct: 796 MGAAEQFVLTLSDRGFGKRSSSYEYRTSGRGGKGITAMRVNARNGNLVASFPVEASDQIM 855

Query: 663 VVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
           +V    +L+   +D I  + R  +GV + +         +
Sbjct: 856 LVTNAGQLIRVPVDDIRIVGRASQGVTVFNTDKAERVVSV 895



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 71/277 (25%), Gaps = 24/277 (8%)

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
            + G R +T   +   + +     ++       V            +     A+    GD
Sbjct: 628 QNEGERISTIMPLPEDETSWDTLDVMFATASGNVR-RNKLSDFTTVNRNGKIAMKLDPGD 686

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            +           +LL +  G+    P  ++   +G        I+L  +  +++  + +
Sbjct: 687 HIVHVEICRPEQNVLLTTALGQCIRFPVEDVRVFKGRDSTGVRGINLAQDDKVISMAILN 746

Query: 610 STCKLLVVS---SKGNAFIVE----------ESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           +       S     G   +                 A      + + +    +M      
Sbjct: 747 AFD----ASPEERAGYLKMRRAVIGDAGEAEAEPAEAEEASEASAISLERYNEMGAA--- 799

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               V  + +       S  +     RG KG+          + V  F +      +   
Sbjct: 800 -EQFVLTLSDRGFGKRSSSYEYRTSGRGGKGITAMRVNARNGNLVASFPVEASDQIMLVT 858

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                         +  R   G  V     ++ + +S
Sbjct: 859 NAGQLIRVPVDDIRIVGRASQGVTVFN-TDKAERVVS 894


>gi|15677247|ref|NP_274400.1| DNA gyrase subunit A [Neisseria meningitidis MC58]
 gi|254805179|ref|YP_003083400.1| DNA gyrase subunit A [Neisseria meningitidis alpha14]
 gi|7226624|gb|AAF41750.1| DNA gyrase subunit A [Neisseria meningitidis MC58]
 gi|254668721|emb|CBA06523.1| DNA gyrase subunit A [Neisseria meningitidis alpha14]
 gi|308389502|gb|ADO31822.1| DNA gyrase subunit A [Neisseria meningitidis alpha710]
 gi|316984203|gb|EFV63181.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76]
 gi|325128426|gb|EGC51307.1| DNA gyrase, A subunit [Neisseria meningitidis N1568]
 gi|325130461|gb|EGC53221.1| DNA gyrase, A subunit [Neisseria meningitidis OX99.30304]
 gi|325134379|gb|EGC57024.1| DNA gyrase, A subunit [Neisseria meningitidis M13399]
 gi|325140397|gb|EGC62918.1| DNA gyrase, A subunit [Neisseria meningitidis CU385]
 gi|325199996|gb|ADY95451.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76]
 gi|325205849|gb|ADZ01302.1| DNA gyrase, A subunit [Neisseria meningitidis M04-240196]
          Length = 916

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/851 (28%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDK 418

Query: 419 --------------------------------------SRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTWIDSA 715
              +     D++
Sbjct: 893 VAEDESELSDAS 904



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 794 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 853

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 854 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 883


>gi|254669835|emb|CBA04223.1| DNA gyrase subunit A [Neisseria meningitidis alpha153]
          Length = 916

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 238/851 (27%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDK 418

Query: 419 --------------------------------------SRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTWIDSA 715
              +     D++
Sbjct: 893 VAEDESELSDAS 904



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 794 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 853

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 854 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 883


>gi|240115869|ref|ZP_04729931.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
 gi|268601544|ref|ZP_06135711.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
 gi|268585675|gb|EEZ50351.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
          Length = 916

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/851 (28%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAVEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKN-GVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTW 711
              +    
Sbjct: 893 VAEDESEL 900



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
                +  +I    R   G   + +   E +  + +V  D 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897


>gi|192382546|gb|ACF04294.1| GyrA [Neisseria meningitidis]
 gi|192382548|gb|ACF04295.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 238/851 (27%), Positives = 400/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++     +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDPTIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDK 418

Query: 419 --------------------------------------SRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTWIDSA 715
              +     D++
Sbjct: 893 VAEDESELSDAS 904



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 794 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 853

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 854 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 883


>gi|325204378|gb|ADY99831.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240355]
          Length = 916

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 238/851 (27%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDK 418

Query: 419 --------------------------------------SRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLAYPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTWIDSA 715
              +     D++
Sbjct: 893 VAEDESELSDAS 904



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 794 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 853

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 854 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 883


>gi|240128418|ref|ZP_04741079.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268686814|ref|ZP_06153676.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268627098|gb|EEZ59498.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
          Length = 916

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 238/851 (27%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         +SL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVIRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKN-GVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTW 711
              +    
Sbjct: 893 VAEDESEL 900



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
                +  +I    R   G   + +   E +  + +V  D 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897


>gi|241760567|ref|ZP_04758660.1| DNA gyrase, A subunit [Neisseria flavescens SK114]
 gi|241319071|gb|EER55573.1| DNA gyrase, A subunit [Neisseria flavescens SK114]
          Length = 923

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 240/852 (28%), Positives = 401/852 (47%), Gaps = 116/852 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ +A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D PE  I++L+  I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI EL+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L     P+++ L  
Sbjct: 300 DLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLSRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I  E  NL+++      +L+  ++    I  E+ ++K  F        RR+   
Sbjct: 479 GLDQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+I+   +              A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS-------------------------------IDQIPEMSRGKGVR------- 688
             K + F+                                + +P   +  GVR       
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENALPS-GK-HGVRPSGRGSG 768

Query: 689 ---LQSYK-DGGISDVICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                    DG I  +I F        L  + +    Y +           +GG G++  
Sbjct: 769 GLRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 742 KGFPRSGKFLSS 753
               R+G  +++
Sbjct: 829 NTGERNGDLVAA 840



 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 10/113 (8%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +   +     V+  D + ++     L+   ++QI E  R   GVRL +  +G 
Sbjct: 833 RNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEGE 885



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 20/89 (22%), Gaps = 5/89 (5%)

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWIDSAG 716
            V     N       I      ++G +G    +   ++G +         + L  I S  
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVSETDDLMLITSG- 855

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                           R   G  +     
Sbjct: 856 -GVLIRTKVEQIRETGRAAAGVRLINLDE 883



 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVSETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
                +  +I    R   G   + +   E +  
Sbjct: 857 VLIRTKVEQIRETGRAAAGVRLINLDEGETLVS 889


>gi|192382550|gb|ACF04296.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/851 (28%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDK 418

Query: 419 --------------------------------------SRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTWIDSA 715
              +     D++
Sbjct: 893 VAEDESELSDAS 904



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 794 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 853

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 854 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 883


>gi|294155383|ref|YP_003559767.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145]
 gi|291600393|gb|ADE19889.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145]
          Length = 899

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 399/760 (52%), Gaps = 32/760 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  +L YA+S I  RA+PD RDG KPVHRRI++ M E+G+ + +  +K
Sbjct: 69  EGLSPVRVDNEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILYDMLELGITYSSQHRK 128

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVY+++VRLAQ F  RYPL+ G GNFG+IDGDSAAA RYTEA
Sbjct: 129 SARIVGDVLGKYHPHGDSSVYEAMVRLAQDFSMRYPLVDGHGNFGSIDGDSAAAMRYTEA 188

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L G+ +D VDF D Y+  + EPVV PS+FPNLL +G +GIAVGMAT IP H
Sbjct: 189 RMSKLASEMLDGIKKDTVDFVDNYDASELEPVVLPSRFPNLLVSGATGIAVGMATEIPPH 248

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +A   N EI+ E+L+ +I GPDFPTG  I+   + I++ Y  G+G   VR+
Sbjct: 249 NLSETINATIAFARNNEITTEELMIHIKGPDFPTGATIL-GVKGILDMYETGKGKIPVRS 307

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   I+VTEIPY V+K+ +IEKI EL   K +  + ++RDES  +   ++ 
Sbjct: 308 KTKIEEFANGKSRIIVTEIPYAVKKTTIIEKIVELHKDKVVEGIGELRDESNREGIRIVI 367

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P +L+  +F  S ++T    N+  L     P+++ L  IL  +L H+ EV+ R
Sbjct: 368 DVKKGFNPHVLLNKLFQKSYLQTNVNANLVALV-NGEPKLLNLKQILNIYLNHQIEVVTR 426

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R  F ++    ++ IL GL IA  NIDE++ II+        +  + +RF+LTE Q  AI
Sbjct: 427 RLKFDLEKALDKLHILDGLKIAVNNIDEVVQIIKTSANDAIAQERLGTRFNLTEKQTKAI 486

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++ LR L  L   ++  E+D L  E   I S+L S ++  + I  E+  +KE +     
Sbjct: 487 LDMSLRRLTGLNIEKMNQEIDELNKEISYIRSILESREKLIDLIVDELEIIKEKYGD--- 543

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
             +RRT   E   A  +   + +I    I +  S +G+++ +K             ++ +
Sbjct: 544 --KRRTEIDE--SAISSISDEDLIPVNTIVITTSVKGYVKRMKLDDYNVQNRGGIGVNTM 599

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-----H 598
                D +   L   T   ++L +  G+ Y + A  +  G    +    +  +       
Sbjct: 600 KTYADDDISTILQTTTHTDLMLFTNLGRVYRIRAHQIPEGSKQSKGTPFINIIPSLNEKE 659

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + +V+      Y     L+ V+  G     + S+  +    GK   K+   + +     
Sbjct: 660 GEKVVSLLAVETYSDEQYLVTVTENGIIKKTQISQYESIRSNGKYAFKLRENDHLVNAFI 719

Query: 656 VTGDHVAVVGENRK-LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
           V   +  ++  N K ++ FS + +  + R   GVR  +  +G    +      +G   + 
Sbjct: 720 VEDGNEILIASNGKNVVKFSSNDLRPLGRSSFGVRGITLAEGKKV-LTASSDKDGDFILS 778

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + + +        L KRGG G        ++G  + +
Sbjct: 779 IGTKGFGKLTPSEEFRLIKRGGKGVTAINA-DKAGDLIFA 817



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMK 651
           I L   + ++TA        +L + +KG   +    E     R GK  T +       + 
Sbjct: 756 ITLAEGKKVLTASSDKDGDFILSIGTKGFGKLTPSEEFRLIKRGGKGVTAINADKAGDLI 815

Query: 652 LVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
               V   D   ++      +   I QI   SR  KGV++ + +D      +     E  
Sbjct: 816 FAKFVKPNDEALIITAAGTTIRILISQISVTSRATKGVKIINLRDNDEIIAVEIVKNEQE 875

Query: 710 T 710
            
Sbjct: 876 L 876



 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 3/154 (1%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + +I      VV  +   +R L   S  +  +   EG  +  A      D IL + T G
Sbjct: 724 NEILIASNGKNVVKFSSNDLRPLGRSSFGVRGITLAEGKKVLTASSDKDGDFILSIGTKG 783

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                P+      +  G+ +  +        I   FV  +   L++ ++ G    +  S+
Sbjct: 784 FGKLTPSEEFRLIKRGGKGVTAINADKAGDLIFAKFVKPNDEALII-TAAGTTIRILISQ 842

Query: 631 IIANTR--KGKTFLKVSSEEKMKLVVKVTGDHVA 662
           I   +R  KG   + +   +++  V  V  +   
Sbjct: 843 ISVTSRATKGVKIINLRDNDEIIAVEIVKNEQEL 876


>gi|240013958|ref|ZP_04720871.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI18]
 gi|240016400|ref|ZP_04722940.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA6140]
 gi|240113113|ref|ZP_04727603.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|240121527|ref|ZP_04734489.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID24-1]
 gi|240125906|ref|ZP_04738792.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|254493910|ref|ZP_05107081.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291]
 gi|260440316|ref|ZP_05794132.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
 gi|268599197|ref|ZP_06133364.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|268684504|ref|ZP_06151366.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|291043610|ref|ZP_06569326.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
 gi|226512950|gb|EEH62295.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291]
 gi|268583328|gb|EEZ48004.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|268624788|gb|EEZ57188.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|291012073|gb|EFE04062.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
          Length = 916

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/851 (28%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKN-GVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTW 711
              +    
Sbjct: 893 VAEDESEL 900



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
                +  +I    R   G   + +   E +  + +V  D 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897


>gi|218245437|ref|YP_002370808.1| DNA gyrase subunit A [Cyanothece sp. PCC 8801]
 gi|257058473|ref|YP_003136361.1| DNA gyrase subunit A [Cyanothece sp. PCC 8802]
 gi|218165915|gb|ACK64652.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8801]
 gi|256588639|gb|ACU99525.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8802]
          Length = 857

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 245/798 (30%), Positives = 382/798 (47%), Gaps = 66/798 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  ++ +    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TFPQDRIIPTDLSNEMSHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRNPLIEGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +    +L+ ++ + VDF D ++    EPVV P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQTLSTNALLRDIEAETVDFIDNFDGSQQEPVVLPARVPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI NPE++  +L + I GPDFPTGG I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELIDGTIALIHNPEMAESELHKLIPGPDFPTGGQIL-GRSGIRDAYTSGRGS 240

Query: 250 FRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +         CI+VTE+PYQ  K+ LIE+IA+L+  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETLEQRGRPDRDCIIVTELPYQTNKAALIERIADLVNEKRIEGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R   P +++ +++  + +++ F  NM  L     PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPIQSNFGANMLALV-NGEPQLLTLKQFLTVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
             R E + RR+ + ++    R  +L+GLLIA  N+D +I +IR              +F 
Sbjct: 360 EFRVETITRRTQYELRKAQERDHLLQGLLIALDNLDAVIQLIRGAADATTARDGLIEQFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q DAIL ++LR L  LE  +I +E   L A+   +  +L   ++    I  E+ ++
Sbjct: 420 LSVVQADAILQMQLRRLTALEAEKIHAEHQELEAKIADLQDILARRERIEAIIEEELTQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K I +       RRT        +   +   +I  E   ++++ +G+I+ +   +    +
Sbjct: 480 KTIHATP-----RRTEII---HDEGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFGAQS 531

Query: 543 L--------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                      KE D ++  L     D +L  S  G  YTLPA  +   S    G  I  
Sbjct: 532 RATRGKAAAKIKEDDVVEHFLSCCDHDHVLFFSDRGVVYTLPAYQIPAASRTARGVPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +  ++ I +      +      ++++ KG       S        G   + +   ++
Sbjct: 592 MLPIPKDEKITSIVAVSEFREDVYFIMLTRKGYIKKTALSAFSNIRTNGLIAIVLGEGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++ V      D + +       + F  D  QI  + R  +GV+    K G     +    
Sbjct: 652 LRWVKVAQEEDSIIIGTRLGMAIHFHADHQQIRPLGRSTRGVKAMKLKKGDELISMDILS 711

Query: 706 CE-------------------------------GLTWIDSAGRSYNRSENDLLGWLGKRG 734
            +                               G   +      Y +        L  R 
Sbjct: 712 SQVIAGISTVHEGEEEEDLLENEEELTVEETSGGPWILTITNGGYGKRVPVKQFRLQNRA 771

Query: 735 GVGSLVPKGFPRSGKFLS 752
           G+G  V K    S +  S
Sbjct: 772 GLGVRVIKFKSPSDRLAS 789



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGK--TFLKVS-SEEKMKLVVKVTG-DHVAVVGENRK 669
           +L +++ G    V   +     R G     +K     +++  ++ V   D + +V     
Sbjct: 748 ILTITNGGYGKRVPVKQFRLQNRAGLGVRVIKFKSPSDRLASLLVVNEEDELMIVSNRGI 807

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           ++  ++D I   SR   GVR+Q   +  
Sbjct: 808 IIRQAVDAISTQSRMATGVRVQRLDEDD 835


>gi|121635089|ref|YP_975334.1| DNA gyrase subunit A [Neisseria meningitidis FAM18]
 gi|120866795|emb|CAM10548.1| DNA gyrase subunit A [Neisseria meningitidis FAM18]
 gi|325132422|gb|EGC55115.1| DNA gyrase, A subunit [Neisseria meningitidis M6190]
 gi|325138411|gb|EGC60979.1| DNA gyrase, A subunit [Neisseria meningitidis ES14902]
 gi|325142582|gb|EGC64977.1| DNA gyrase, A subunit [Neisseria meningitidis 961-5945]
 gi|325198529|gb|ADY93985.1| DNA gyrase, A subunit [Neisseria meningitidis G2136]
          Length = 916

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/851 (28%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDK 418

Query: 419 --------------------------------------SRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTWIDSA 715
              +     D++
Sbjct: 893 VAEDESELSDAS 904



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 794 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 853

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 854 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 883


>gi|238650438|ref|YP_002916290.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic]
 gi|238624536|gb|ACR47242.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic]
          Length = 905

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/833 (28%), Positives = 387/833 (46%), Gaps = 91/833 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ ++    N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G
Sbjct: 1   MTDKSS---SNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 ++KSARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PL+ GQGNFG++DGD+
Sbjct: 58  NHASKPYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVEGQGNFGSMDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+RM +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAV
Sbjct: 118 AAAMRYTESRMAKVSYKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  
Sbjct: 178 GMATNIPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES
Sbjct: 237 GRGSIIMRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  ++
Sbjct: 297 NKNGVRIFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
             R  V+  R+ + +     R  IL GL IA  NIDEII II+  + P            
Sbjct: 356 NFREVVITNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQW 415

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 + + TE Q  AIL +RL+ L  +E+ +++ +L NL  E
Sbjct: 416 EALNILPLVKLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTE 475

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +  ++L S  +    +  E+ +VKE F+           F +         +  +   
Sbjct: 476 ITEYLNILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVT 535

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               +        R+ K      S L  ++ D         T   +L  S  G+ Y+L  
Sbjct: 536 LGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKL 595

Query: 578 GNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
             L      G+   +  ++ L  N+ I                 ++  ++KGN    +  
Sbjct: 596 YKLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLL 655

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
           +       GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   G
Sbjct: 656 DFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDG 715

Query: 687 VRLQSY-KDGGISDVICFK----------------------------------------- 704
           VR     K+  +  +   K                                         
Sbjct: 716 VRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNSEELGVSLTVP 775

Query: 705 -----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 AIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           + +S   +L V+  G              R G   + +   +K   +  V+ V   D + 
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  + KL+   ++ +    R   GV L    DG     +     
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 63/227 (27%), Gaps = 57/227 (25%)

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI-- 631
            +   +LL  +      ++ I L+ +  ++          +L+ +  G A       +  
Sbjct: 648 NIRRSDLLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRV 707

Query: 632 -IANTRKGKTFLKVSSEEKMKLVVKVTG-------------------------------- 658
             + T  G   +K++ E+ +  +  + G                                
Sbjct: 708 IKSRTSDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNSEE 767

Query: 659 -----------------DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD--GGIS 698
                            + +  V EN      S        RG  G+      D  G + 
Sbjct: 768 LGVSLTVPAIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVV 827

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            V+  K+ + L  I ++G+            +  R   G ++ K   
Sbjct: 828 GVMPVKMDDELMLITNSGK--LIRCKLESVRITGRNTSGVILFKLDD 872



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A++ + IL ++ +G      A         G  I  +   +    +V         +L+
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 616 VVSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           ++++ G     +     I      G    K+   EK+  V  +  
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884


>gi|307352948|ref|YP_003893999.1| DNA gyrase subunit A [Methanoplanus petrolearius DSM 11571]
 gi|307156181|gb|ADN35561.1| DNA gyrase, A subunit [Methanoplanus petrolearius DSM 11571]
          Length = 825

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 259/758 (34%), Positives = 397/758 (52%), Gaps = 16/758 (2%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            NS+    + V  VS+   ++  YL YA+S I  RAIPD+RDG KPVHRR ++AM EMG 
Sbjct: 5   ENSSAEQVKRVLPVSIEEEMKSSYLDYAMSVIVGRAIPDVRDGLKPVHRRTLYAMGEMGN 64

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                FKKSARIVGEV+GK HPHGD S+YD+LV++AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 65  YHDKPFKKSARIVGEVMGKYHPHGDSSIYDTLVKMAQPFSYRYMLVEGQGNFGSIDGDSA 124

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+  V+E +L+ +D++ VDF   ++E   EP+V P+K PNLL NG+ GIAVG
Sbjct: 125 AAMRYTEARLDPVSESLLEDIDKETVDFGPNFDESLQEPLVLPAKIPNLLVNGSDGIAVG 184

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT +P HN+ E+C A  A+ID+PEIS   L+EY+ GPDFPTGG+I+  R  I  +Y  G
Sbjct: 185 MATKMPPHNIGEVCSAVCAMIDDPEISPAGLMEYMPGPDFPTGGVIL-GRSGIASAYTTG 243

Query: 247 RGGFRVRARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           RG  R+R    +E+  G     I+++EIPYQV K+RLIE+IA+L+  K+I  + DIRDES
Sbjct: 244 RGRIRMRGVAEIEDHEGSKKSRIIISEIPYQVNKARLIEQIADLVRDKKIDGISDIRDES 303

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   V+    +S+ P +++  ++  + +E+ F +    +     P+V+ L  I++E+L
Sbjct: 304 DKDGIRVVIELKKSIVPMVVLNQLYKHTPLESTFGVINLAIVD-NQPKVLTLKEIIQEFL 362

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR+ V++RR+ F ++  + R+ IL+GLL+A  NID +IA IR     +         F 
Sbjct: 363 KHRKSVIYRRTIFELKKAEDRLHILRGLLLALDNIDAVIATIRGSSTTEEASQKLIENFG 422

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q DAIL ++LR L  LE+ +I  E D LL E E++  +++     + +I  E  E+
Sbjct: 423 LDEIQADAILKMQLRRLAALEQQKIIDERDGLLKEVERLKLIISDEGHIFAEIKKETLEI 482

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +S                       Q  +       +        +        +  
Sbjct: 483 SEKYSDERRTKISHDVSDLDKEDLIENKQVLVSLTSHNYIKSMPLDTYKGQHRGGRGIIG 542

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
           +  K+ D +K    A T D +L  ++ G+ Y L   ++     +  G+AI  L++L   +
Sbjct: 543 MSTKDEDFVKSVFVASTHDYLLCFTSSGRVYWLKVYDIPEATRQSRGKAIVNLLELGDEE 602

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKV 656
            +        +      L  +  G    + + E     + G   + +   +++  V   V
Sbjct: 603 KVTAVIPVSEFKEDEFFLFATLNGMVVKIPQVEFSRPRQSGIYAITLKDGDELVHVMKAV 662

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + +     + L F I+ I    R   GV+    +   + ++      E    +   
Sbjct: 663 DSGEIILTTRMGQSLRFGIESISLRHRNALGVKGIKLR--YMDELQDVTPVEKDHLLTIT 720

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + Y +           R  +G    +    SG  +SS
Sbjct: 721 EKGYGKRTEFDEFRGHGRATMGVRNIQ-TDVSGGIVSS 757



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 78/225 (34%), Gaps = 9/225 (4%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           +LG        +  ++    +  +       VV   +      +     + A+  K+GD 
Sbjct: 597 ELGDEEKVTAVIPVSEFKEDEFFLFATLNGMVVKIPQVEFSRPR--QSGIYAITLKDGDE 654

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L   + A  +  I+L +  G++      ++     +   +   I L +  ++      + 
Sbjct: 655 LVHVMKAVDSGEIILTTRMGQSLRFGIESISLRHRNALGV-KGIKLRYMDELQDVTPVEK 713

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE--EKMKLVVKVTGD-HVAVVGEN 667
              LL ++ KG     E  E   + R       + ++    +     V+ D  + ++  +
Sbjct: 714 DH-LLTITEKGYGKRTEFDEFRGHGRATMGVRNIQTDVSGGIVSSKAVSDDEDIILMSRS 772

Query: 668 RKLLIFSIDQIPEMSRG-KGVRLQSYKDGG-ISDVICFKICEGLT 710
             ++   + +I    RG +GVR+    +G  +         EG  
Sbjct: 773 GIVIRTKVSEISIQKRGTRGVRIMKLDEGDSVVGFTILDSDEGDE 817


>gi|225025685|ref|ZP_03714877.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC
           23834]
 gi|224941578|gb|EEG22787.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC
           23834]
          Length = 915

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 236/833 (28%), Positives = 400/833 (48%), Gaps = 108/833 (12%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ +++KKSAR
Sbjct: 14  IPVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSSYKKSAR 73

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD AAA RYTE RM 
Sbjct: 74  IVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDGAAAMRYTEIRMA 133

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  +L  ++ED V+F   Y+  + EP+V P++FP+LL NG++GIAVGMAT+IP HN+ 
Sbjct: 134 KIAHEMLADIEEDTVNFGPNYDGSEQEPLVMPTRFPSLLTNGSAGIAVGMATNIPPHNLG 193

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           +  +A L L+ +P+ SI+ L++ I  PDFPTG  I      + E YR GRG   +R +  
Sbjct: 194 DTVDACLQLLADPDTSIDALIDTIKAPDFPTGATIY-GLAGVREGYRTGRGRVVMRGKTH 252

Query: 258 VEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           +E +G+      I++ EIPYQV K++L+EKI EL+  K +  + D+RDES +    V+  
Sbjct: 253 IEPIGKHGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGISDLRDESDKSGMRVVIE 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R+ + ++++  ++ L+ ++  F +NM  L     P+++ L  IL E+L HRREV+ RR
Sbjct: 313 LKRNENAEVVLNQLYKLTQLQDSFGINMVALVD-GQPRLLNLKQILAEFLRHRREVVTRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------------- 420
           + FR++       I +G  +A  NID +I +I+                           
Sbjct: 372 TLFRLKKARHEGHIAEGKAVALSNIDPMIQLIKESADAAKAKAKLLARPWQSGLVGDMLS 431

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L++ Q DAIL + LR+L  L++  I ++   ++A
Sbjct: 432 RTDLDLNMARPEGLPENLGLREDGYYLSDLQADAILRMSLRNLTGLDQDTILADYKTIMA 491

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +      +L   ++    I  E+ E+K  F        RR+   E++        + +I 
Sbjct: 492 QIIDFLDILAKPERITQIIHDELIEIKTNFGDP-----RRS---EINPFGGDIADEDLIP 543

Query: 517 KEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
              + V +++ G+         ++ +       A   K+ D ++    A+T D ++  + 
Sbjct: 544 PREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTN 603

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ + +    L        G  I  +I L+ N+ +        +     +   ++ G  
Sbjct: 604 HGRCHWIKVYKLPEGGRNSRGRPINNVIQLDENEKVSAILPVRDFPEDEYVFFATAMGVV 663

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI------- 675
             V+ S     ++ G   + +   + +  V + +G + + +     K + F+        
Sbjct: 664 KKVQLSAFKNVSKVGIKAIALKEGDSLVGVARTSGRNDIMLFSNLGKAIRFNEYWERSSD 723

Query: 676 ---------DQI------------PEMSRGKGVR----------LQSYKD-GGISDVICF 703
                     +I            P   +  GVR               + G I  +I F
Sbjct: 724 DEETGDDNDTEISGSQEDDNAESAPISGK-HGVRPSGRGSGGLRGMRLPENGRIVSLITF 782

Query: 704 KIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   L  + +    Y +           +GG G++      R+G  +++
Sbjct: 783 APECEQSELQVLTATANGYGKRTPIASYSRKNKGGQGNIAINTGERNGDLVAA 835



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 48/140 (34%), Gaps = 10/140 (7%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-----KLLVVSSKG 621
             + ++  +   + +   G G      + L  N  IV+   +   C     ++L  ++ G
Sbjct: 741 DDNAESAPISGKHGVRPSGRGSGGLRGMRLPENGRIVSLITFAPECEQSELQVLTATANG 800

Query: 622 NAFIVEESEIIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
                  +      + G     +       + +   +    D + ++     L+   ++Q
Sbjct: 801 YGKRTPIASYSRKNKGGQGNIAINTGERNGDLVAATLVSESDDLMLITSGGVLIRTKVEQ 860

Query: 678 IPEMSR-GKGVRLQSYKDGG 696
           I E  R   GV+L +  +G 
Sbjct: 861 IRETGRAAAGVKLINLDEGE 880



 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/113 (9%), Positives = 28/113 (24%), Gaps = 11/113 (9%)

Query: 642 LKVSSEEKMKLVVKVTGD------HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--Y 692
           +++    ++  ++    +       V     N       I      ++G +G    +   
Sbjct: 768 MRLPENGRIVSLITFAPECEQSELQVLTATANGYGKRTPIASYSRKNKGGQGNIAINTGE 827

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           ++G +         + L  I S                  R   G  +     
Sbjct: 828 RNGDLVAATLVSESDDLMLITSG--GVLIRTKVEQIRETGRAAAGVKLINLDE 878



 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 76/261 (29%), Gaps = 7/261 (2%)

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
            +  L+ +E ++ I             F+     V  +     +++ K+    I  +  +
Sbjct: 629 NVIQLDENEKVSAILPVRDFPEDEYVFFATAMGVVKKVQLSAFKNVSKVGIKAIALKEGD 688

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
            L    +     +         A    E  E  S   + G    T    S+ D       
Sbjct: 689 SLVGVARTSGRNDIMLFSNLGKAIRFNEYWERSSDDEETGDDNDTEISGSQEDDNAESAP 748

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +  K  +       G +R ++                        +  ++L  + +G   
Sbjct: 749 ISGKHGVRPSGRGSGGLRGMRLPENGRIVSLITFAPE-----CEQSELQVLTATANGYGK 803

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
             P  +       G+    +     N D+V A +   +  L++++S G     +  +I  
Sbjct: 804 RTPIASYSRKNKGGQGNIAINTGERNGDLVAATLVSESDDLMLITSGGVLIRTKVEQIRE 863

Query: 634 NTRK--GKTFLKVSSEEKMKL 652
             R   G   + +   E +  
Sbjct: 864 TGRAAAGVKLINLDEGETLVS 884


>gi|315105173|gb|EFT77149.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA2]
          Length = 891

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 232/791 (29%), Positives = 376/791 (47%), Gaps = 49/791 (6%)

Query: 1   MGVDNISNSNTLVEEN---------VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+     +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G  ++  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGA-LIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+S+    + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VD-NVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +           + E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+ +          K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSGRGHGEAIQ-----LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               L                  +       ++T   YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-K 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFK----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           GV    ++       +         +      + G  Y +           RGGVG    
Sbjct: 711 GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAM 770

Query: 742 KGFPRSGKFLS 752
                 G  + 
Sbjct: 771 ALSEERGSLVG 781


>gi|261377477|ref|ZP_05982050.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685]
 gi|269146206|gb|EEZ72624.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685]
          Length = 918

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/851 (28%), Positives = 399/851 (46%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ +A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+I
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFAMRYVLVDGQGNFGSI 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D PE  I++L++ I  PDFPTG  I      + E
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIY-GLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +RA+   E +G+      IV+ EIPYQV K++L+EKI EL+  K +  + 
Sbjct: 240 GYKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGSDDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDEAADNENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   D  I  +I F        L  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPVDSKIVSLITFSPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 10/127 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSS 646
           + L  +  IV+   +         ++L  ++ G       ++     + G     +    
Sbjct: 773 MRLPVDSKIVSLITFSPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 647 --EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
              + +   +    D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLT 710
              +   
Sbjct: 893 VAEDESE 899



 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 20/89 (22%), Gaps = 5/89 (5%)

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWIDSAG 716
            V     N       I      ++G +G    +   ++G +         + L  I S  
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVSETDDLMLITSG- 855

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                           R   G  +     
Sbjct: 856 -GVLIRTKVEQIRETGRAAAGVKLINLDE 883



 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVSETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
                +  +I    R   G   + +   E +  + +V  D 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897


>gi|319408726|emb|CBI82383.1| DNA gyrase subunit A [Bartonella schoenbuchensis R1]
          Length = 927

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 256/848 (30%), Positives = 404/848 (47%), Gaps = 102/848 (12%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++   L E +    ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDLTPLTERDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F  +++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSI 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +++E +L  +D+D VDF+D Y+  + EP+V P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKISEELLTDIDKDTVDFQDNYDGREREPMVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALID+P I+++++++ I GPDFPTGGII+     I  
Sbjct: 181 GIAVGMATNIPPHNLGEVVDGCIALIDDPSITLDEMIKIIPGPDFPTGGIIL-GSSGIRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE+      I+V+EIPYQ+ K+ +IEKIAEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIDGVSDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    R    D+++  ++  + ++  F  NM  L+ G  P+ M L  IL
Sbjct: 300 RDESDRDGYRVVIELKREAVADVVLNQLYRYTPLQASFGCNMVALN-GGKPEQMTLLDIL 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------- 412
           + +++ R EV+ RR+ + ++    R  +L GL IA  NIDEIIA+IR             
Sbjct: 359 RAFVSFREEVVSRRTKYLLRRARERAHVLVGLAIAVANIDEIIALIRKASDPQIARAQLM 418

Query: 413 --------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + + L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWLAVDIAPLIKLIDDPRHIIHEDNTYHLSEEQARAILELRLQRLTALGRDEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +      +L S  +    +  E+  ++E+F+          +    S    A  + 
Sbjct: 479 KIGVDITDYLDILASRSRIMGIVKDELNALREVFATPRRTVFGFGSADMDSEDLIAPEEM 538

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            +       +        R+ +      S +  K+ D +     A+T   +L  S+ G  
Sbjct: 539 VVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIV 598

Query: 573 YTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAF 624
           Y      L   + +  G A+  ++ L   + I T        K      ++  + +G   
Sbjct: 599 YKEKVWRLPIGTPQSRGRALINMLPLQQGERITTIMPLPDDEKDWGKLDVMFATMRGTVR 658

Query: 625 IVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-M 681
             + S+ +   R GK  +K     +++  V   T  D V +   N + + F +  +   +
Sbjct: 659 RNKLSDFVQVNRNGKIAMKFGEEGDEILSVETCTEYDDVVLTTANGQCIRFPVSDVRVFV 718

Query: 682 SR-GKGVRLQSYKDGGISDVICF--------------------------KICEGLTW--- 711
            R   GVR  +  D      +                               E +     
Sbjct: 719 GRHSMGVRGINMGDSDKVISMTILKHVEATSTERSAYIKRVISERRAAGADDEDIVIGDE 778

Query: 712 ------------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLV--PKGFP 745
                                   +  +   Y +  +     +  RGG G     P    
Sbjct: 779 ESEATVTELTDERYMELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDPSKTA 838

Query: 746 RSGKFLSS 753
             GK +++
Sbjct: 839 EIGKLVAA 846



 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 7/98 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              LL VS  G        +   + R GK        K +   K+     V   D + +V
Sbjct: 799 EQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDPSKTAEIGKLVAAFPVEAQDQIMLV 858

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            +  +L+   ++ I    R  KGV + +   G     +
Sbjct: 859 SDKGQLIRVPVNGIRIAGRSTKGVTIFNTAKGEKVVSV 896


>gi|304387287|ref|ZP_07369480.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           meningitidis ATCC 13091]
 gi|304338670|gb|EFM04787.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           meningitidis ATCC 13091]
          Length = 916

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/851 (28%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKDK 418

Query: 419 --------------------------------------SRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTWIDSA 715
              +     D++
Sbjct: 893 VAEDESELSDAS 904



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 794 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 853

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 854 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 883


>gi|254672258|emb|CBA05271.1| DNA gyrase subunit A [Neisseria meningitidis alpha275]
 gi|325201905|gb|ADY97359.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240149]
 gi|325208343|gb|ADZ03795.1| DNA gyrase, A subunit [Neisseria meningitidis NZ-05/33]
          Length = 916

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/851 (28%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKDK 418

Query: 419 --------------------------------------SRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTWIDSA 715
              +     D++
Sbjct: 893 VAEDESELSDAS 904



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 794 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 853

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 854 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 883


>gi|290958998|ref|YP_003490180.1| DNA gyrase subunit A [Streptomyces scabiei 87.22]
 gi|260648524|emb|CBG71635.1| DNA gyrase subunit A [Streptomyces scabiei 87.22]
          Length = 864

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 247/786 (31%), Positives = 398/786 (50%), Gaps = 45/786 (5%)

Query: 1   MGVDNISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M   N   +     E    V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+
Sbjct: 1   MADQNTPVTPEESGETVQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GN
Sbjct: 61  LYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+   D AAA RYTE +M  ++  +++ +DED VDF D Y+    EP V P++FPNLL 
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEDTVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIV 233
           NG++GIAVGMAT+IP HN++E+   A   ++NPE S E     L+E I GPDFPTG  +V
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEDLLDALIERIKGPDFPTGA-LV 239

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   
Sbjct: 240 VGRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDG 298

Query: 294 RIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           +I  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L    VP
Sbjct: 299 KIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GVP 357

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           + + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D 
Sbjct: 358 RTLSLDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDT 417

Query: 413 P---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               +  ++    + E Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  
Sbjct: 418 VDIARTGLMDLLEIDEIQANAILEMQLRRLAALERQKIIQEHDELQAKIREYNEILASPV 477

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +Q   ++ E+  + E F        R+T              + +I +E I V +S  G+
Sbjct: 478 RQRGIVSAELAAIVEKFGD-----DRKTMLVPYDGDMS---IEDLIAEEDIVVTVSRGGY 529

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           ++          K     +     KE D +     + T   +L  +  G+ Y   A  L 
Sbjct: 530 VKRTKTVDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELP 589

Query: 582 S--GRGHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  G+ +  L+    ++   +I+    Y++T  L++ +  G        +  +   
Sbjct: 590 DAGRDARGQHVANLLAFQPDEAIAEILAIRDYEATPYLVLATKGGLVKKTPLKDYDSPRS 649

Query: 637 KGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGV 687
            G   + +       ++++     V+  D + ++ +  + + F+     +  M R   GV
Sbjct: 650 GGVIAINLREKEDGSDDELIGAELVSPNDDILLISKKAQSIRFTATDEALRPMGRATSGV 709

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           +  S+++G     +   +  G     +    Y +  N     +  RGG+G    K     
Sbjct: 710 KGMSFREGDELLSMNV-VRPGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIVEDR 768

Query: 748 GKFLSS 753
           G  + +
Sbjct: 769 GSLVGA 774


>gi|314922687|gb|EFS86518.1| DNA gyrase, A subunit [Propionibacterium acnes HL001PA1]
 gi|314965772|gb|EFT09871.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA2]
 gi|315094453|gb|EFT66429.1| DNA gyrase, A subunit [Propionibacterium acnes HL060PA1]
 gi|327328948|gb|EGE70708.1| DNA gyrase, A subunit [Propionibacterium acnes HL103PA1]
          Length = 891

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 232/791 (29%), Positives = 376/791 (47%), Gaps = 49/791 (6%)

Query: 1   MGVDNISNSNTLVEEN---------VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+     +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G  ++  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGA-LIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+S+    + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VD-NVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +           + E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+ +          K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSGRGHGEAIQ-----LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               L                  +       ++T   YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-K 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFK----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           GV    ++       +         +      + G  Y +           RGGVG    
Sbjct: 711 GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAM 770

Query: 742 KGFPRSGKFLS 752
                 G  + 
Sbjct: 771 ALSEERGSLVG 781


>gi|218768400|ref|YP_002342912.1| DNA gyrase subunit A [Neisseria meningitidis Z2491]
 gi|121052408|emb|CAM08741.1| DNA gyrase subunit A [Neisseria meningitidis Z2491]
 gi|319410648|emb|CBY91018.1| DNA gyrase subunit A [Neisseria meningitidis WUE 2594]
          Length = 916

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 238/851 (27%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDK 418

Query: 419 --------------------------------------SRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTWIDSA 715
              +     D++
Sbjct: 893 VAEDESELSDAS 904



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 794 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 853

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 854 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 883


>gi|323465563|gb|ADX69250.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus H10]
          Length = 809

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 226/745 (30%), Positives = 382/745 (51%), Gaps = 28/745 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+     +KKSARIVGEV+GK
Sbjct: 2   MRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVTPDKQYKKSARIVGEVMGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  AA RYTEARM+++A  +L+
Sbjct: 62  FHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPAAMRYTEARMSKIAVEMLR 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM T+IP HN+ E+      
Sbjct: 122 DINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGMTTNIPPHNLSEVISGLHM 181

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NP+ + + L++ I GPDFPTGGII+        +Y  G+G   VRA   +E    G 
Sbjct: 182 LMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYR-AYESGKGNIVVRAETNIETEKSGR 240

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V+EIPY V K+ L++KIA+L   K I  +  +RDES +    +     R     ++
Sbjct: 241 ERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQTGMRITIDIRRDASASVV 300

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + ++F  + M+  F +NM  +     P  + L  +L+ +L H+++V+ RR+ F +   + 
Sbjct: 301 LNNLFKQTQMQANFGMNMVAIVD-GAPHYLTLKQMLQYYLDHQKDVVTRRTKFELAKAEA 359

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  NIDEI+ IIR+          ++SRF L + Q  AIL++RL  L  L
Sbjct: 360 RAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLDDKQSQAILDMRLVRLTGL 419

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  ++++E   L A+      +L   ++    I  E+ ++++ F       +RRT     
Sbjct: 420 ERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDIQKRFGD-----KRRTEIG-- 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIA 554
           +    +   + +IEK+ I + +++ G+I+ +              +  +  ++GD ++  
Sbjct: 473 ASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHL 532

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDS-- 610
           +++ T D +L  +  GK Y+  A  +       +   +  L+ L   + + T        
Sbjct: 533 IYSSTHDMLLFFTNAGKVYSRKAYEIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPEGA 592

Query: 611 -TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-R 668
               L  ++  G       SE       G   L +   +++  V+   G    ++G +  
Sbjct: 593 DDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLG 652

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
             + F+ + +  M R   GVR  + +D            +    +  + + Y +      
Sbjct: 653 YAVTFNENDVRAMGRTAAGVRGINLRDHDYVVGSGVLDADD-QVLVISEKGYGKHTPAAE 711

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  RGG G        ++G    
Sbjct: 712 YSVKGRGGKGIKTANITEKNGPLAG 736



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  ++GD L   L       IL+ +  G A T    ++ +
Sbjct: 605 TVKRTHVSEFSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRA 664

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                 A    I+L  +  +V + V D+  ++LV+S KG       +E     R GK   
Sbjct: 665 MGRTA-AGVRGINLRDHDYVVGSGVLDADDQVLVISEKGYGKHTPAAEYSVKGRGGKGIK 723

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     ++V   G  + V+  +  ++ F    + +  R   GVRL    D   
Sbjct: 724 TANITEKNGPLAGVIVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVNDDSQ 783

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 784 VASLTIVPSE 793


>gi|67459447|ref|YP_247071.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2]
 gi|75536139|sp|Q4UKM1|GYRA_RICFE RecName: Full=DNA gyrase subunit A
 gi|67004980|gb|AAY61906.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2]
          Length = 906

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 242/833 (29%), Positives = 387/833 (46%), Gaps = 91/833 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ N     N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G
Sbjct: 1   MTDQN---FSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 ++KSARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+
Sbjct: 58  NHASKPYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+RM +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAV
Sbjct: 118 AAAMRYTESRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  
Sbjct: 178 GMATNIPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES
Sbjct: 237 GRGSIIMRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  ++
Sbjct: 297 NKNGVRIFIELKKDVVVEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           + R  V+  R+ + +     R  IL GL IA  NIDEII II+  + P            
Sbjct: 356 SFREVVITNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNNPNAAKQELMARSW 415

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 + S TE Q  AIL +RL+ L  +E+ +++ +L NL  E
Sbjct: 416 DALNILPLVKLVDDKAMLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATE 475

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +  ++L S  +    +  E+ +VKE F+           F +         +  +   
Sbjct: 476 ITEYLNILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVT 535

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               +        R+ K      S L  ++ D         T   +L  S  G+ Y+L  
Sbjct: 536 LGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKL 595

Query: 578 GNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
             L      G+   +  ++ L  N+ I                 ++  ++KGN    +  
Sbjct: 596 YKLPLSNPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLL 655

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
           +       GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   G
Sbjct: 656 DFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDG 715

Query: 687 VRLQSY-KDGGISDVICFK----------------------------------------- 704
           VR     K+  +  +   K                                         
Sbjct: 716 VRGMKLAKEDSVISMTVLKGISSTKEDRDAYLTVPWEKRLEIAKGEEFNLEELGVTLTAD 775

Query: 705 -----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 SILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           + +S   +L V+  G              R G   + +   +K   +  V+ V   D + 
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  + KL+   ++ +    R   GV L    DG     +     
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884



 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 63/227 (27%), Gaps = 57/227 (25%)

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI-- 631
            +   +LL  +      ++ I L+ +  ++          +L+ +  G A       +  
Sbjct: 648 NIRRSDLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRV 707

Query: 632 -IANTRKGKTFLKVSSEEKMKLVVKVTG-------------------------------- 658
             + T  G   +K++ E+ +  +  + G                                
Sbjct: 708 IKSRTSDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLTVPWEKRLEIAKGEEFNLEE 767

Query: 659 -----------------DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD--GGIS 698
                            + +  V EN      S        RG  G+      D  G + 
Sbjct: 768 LGVTLTADSILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVV 827

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            V+  K+ + L  I ++G+            +  R   G ++ K   
Sbjct: 828 GVMPVKMDDELMLITNSGK--LIRCKLESVRITGRNTSGVILFKLDD 872



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A++ + IL ++ +G      A         G  I  +   +    +V         +L+
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 616 VVSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           ++++ G     +     I      G    K+   EK+  V  +  
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884


>gi|325144681|gb|EGC66979.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240013]
          Length = 916

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 241/850 (28%), Positives = 403/850 (47%), Gaps = 112/850 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDK 418

Query: 419 --------------------------------------SRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP------------EMSRGK-GVR--------- 688
             K + F+                  +I              +  GK GVR         
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPNGKHGVRPSGRGSGGL 770

Query: 689 -LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                  DG I  +I F       GL  + +    Y +           +GG G++    
Sbjct: 771 RGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINT 830

Query: 744 FPRSGKFLSS 753
             R+G  +++
Sbjct: 831 GERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTWIDSA 715
              +     D++
Sbjct: 893 VAEDESELSDAS 904



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 794 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 853

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 854 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 883


>gi|295837750|ref|ZP_06824683.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
 gi|197699828|gb|EDY46761.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
          Length = 874

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 241/768 (31%), Positives = 389/768 (50%), Gaps = 42/768 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 30  RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 89

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +
Sbjct: 90  ARVVGDVMGNYHPHGDSSIYDALVRLAQTWSMRMPLVDSNGNFGSPGNDPAAAMRYTECK 149

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF D Y+    EP V PS+FPNLL NG++GIAVGMAT+IP HN
Sbjct: 150 MAPLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPSRFPNLLINGSAGIAVGMATNIPPHN 209

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   +++PE S E+    L+E I GPDFPTG  +V  R+ I E+YR GRG   
Sbjct: 210 LREVAAGAQWYLEHPEASNEELLDALIERIKGPDFPTGA-LVVGRKGIEEAYRTGRGSIP 268

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RDE S+   +
Sbjct: 269 MRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 327

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ ++F  +D++T F  NM  L    VP+ + LD  ++ W+ H+ E
Sbjct: 328 RLVVVLKRDAVAKVVLNNLFKHTDLQTNFSANMLALVD-GVPRTLSLDAFIRHWVTHQIE 386

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +  +           + E Q
Sbjct: 387 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVEDARGGLMGLLEIDEIQ 446

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  ++  E D L    ++  ++L S ++Q   ++ E+ ++ + F 
Sbjct: 447 ANAILEMQLRRLAALERQKLMQEHDELQRRIDEYHAILASPERQRQIVSDELGQIVDKFG 506

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+              + +I +E I V IS  G+++          K     
Sbjct: 507 D-----DRRSQLVPFDGDMS---MEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 558

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           +     KE D +       T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 559 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 618

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        YD+   L++ +  G        +  +    G   + +       +++
Sbjct: 619 PDESIAQILAIRDYDAAPYLVLATQGGLVKKTSLKDYDSPRSGGVIAINLRETDNGADDE 678

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           +     V+  D + ++ +  + + F+     +  M R   GV+  S++DG     +   +
Sbjct: 679 LIGAELVSADDDLLLISKKAQSIRFTATDDTLRPMGRATSGVKGMSFRDGDELLSMNV-V 737

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             G     +    Y +        +  RGG+G    K     G  + +
Sbjct: 738 RPGTFVFTATDGGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 785



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 5/135 (3%)

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           + L   G   +    +      ++++  V      +   +  G A      E     R G
Sbjct: 708 DTLRPMGRATSGVKGMSFRDGDELLSMNVVRPGTFVFTATDGGYAKRSPVDEYRVQGRGG 767

Query: 639 ---KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
              K    V     +   + V   D +  +     ++   +++I +  R   GV+L +  
Sbjct: 768 LGIKAAKIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQTGRDTMGVQLINLG 827

Query: 694 DGGISDVICFKICEG 708
                  +      G
Sbjct: 828 KRDAVVAVARNAEAG 842


>gi|225075864|ref|ZP_03719063.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens
           NRL30031/H210]
 gi|224952810|gb|EEG34019.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens
           NRL30031/H210]
          Length = 923

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 238/852 (27%), Positives = 401/852 (47%), Gaps = 116/852 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ +A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D+PE  I++L+  I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDDPETEIDELINIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R    +E +G+      IV+ EIPYQV K++L+EKI EL+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGTTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES +    V+    R+ + ++++  ++ ++ ++  F +NM  L     P+++ L  
Sbjct: 300 DLRDESDKSGMRVVIELKRNENAEVVLNQLYKMTQLQDSFGINMVALVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLSRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I  E  NL+++      +L+  ++    I  E+ ++K  F        RR+   
Sbjct: 479 GLDQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAITLKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS-------------------------------IDQIPEMSRGKGVR------- 688
             K + F+                                + +P   +  GVR       
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENALPS-GK-HGVRPSGRGSG 768

Query: 689 ---LQSYK-DGGISDVICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                    DG I  +I F        L  + +    Y +           +GG G++  
Sbjct: 769 GLRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 742 KGFPRSGKFLSS 753
               R+G  +++
Sbjct: 829 NTGERNGDLVAA 840



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 10/113 (8%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +   +     V+  D + ++     L+   ++QI E  R   GVRL +  +G 
Sbjct: 833 RNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEGE 885



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 20/89 (22%), Gaps = 5/89 (5%)

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWIDSAG 716
            V     N       I      ++G +G    +   ++G +         + L  I S  
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVSETDDLMLITSG- 855

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                           R   G  +     
Sbjct: 856 -GVLIRTKVEQIRETGRAAAGVRLINLDE 883



 Score = 41.3 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVSETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
                +  +I    R   G   + +   E +  
Sbjct: 857 VLIRTKVEQIRETGRAAAGVRLINLDEGETLVS 889


>gi|57237914|ref|YP_179162.1| DNA gyrase subunit A [Campylobacter jejuni RM1221]
 gi|57166718|gb|AAW35497.1| DNA gyrase, A subunit [Campylobacter jejuni RM1221]
 gi|315058470|gb|ADT72799.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni S3]
          Length = 862

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 246/786 (31%), Positives = 401/786 (51%), Gaps = 50/786 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ ++S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHI-EKKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   + I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHV-- 661
             +D +  L   +  G       SE       G   + +   +++   + V    D +  
Sbjct: 605 TDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFA 664

Query: 662 ---------------------------------AVVGENRKLLIFSIDQIPEMSR-GKGV 687
                                              V +    + F + ++ E+ R  +GV
Sbjct: 665 TGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGV 724

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 725 TAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 784

Query: 747 SGKFLS 752
           +   +S
Sbjct: 785 TKDLIS 790


>gi|296284413|ref|ZP_06862411.1| DNA topoisomerase IV subunit A [Citromicrobium bathyomarinum JL354]
          Length = 764

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 372/765 (48%), Positives = 529/765 (69%), Gaps = 16/765 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +   +       +       AL ERYL YALSTI  R++PDLRDG KPVHRR++ A
Sbjct: 1   MASKDQGPAEPDSPAAIVDAPFETALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ L   +A+KKSAR+VGEV+GK HPHGD +VYD++VRLAQPF  RYPL+ GQGNFGN
Sbjct: 61  MRQLRLSPDSAYKKSARVVGEVLGKYHPHGDTAVYDAMVRLAQPFALRYPLVEGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEAR+T+ A  ++ G+DE  VDF  TYN E+ EPV+FP  FPNLLANG 
Sbjct: 121 IDGDNAAAARYTEARLTRTAISLMAGLDEGTVDFVPTYNNEEEEPVIFPGLFPNLLANGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IPSHNV E+ EA L +I+NP +   +L++ + GPD  TGG+IV+S E+I 
Sbjct: 181 SGIAVGMATNIPSHNVDEVIEATLEVIENPAVEHARLMQIMQGPDLATGGLIVDSPETIS 240

Query: 241 ESYRLGRGGFRVRARWC-------------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            +Y  GRG FR+RAR+              +E +G G W ++++EIPYQV K +LIE+IA
Sbjct: 241 AAYETGRGSFRIRARFHAAEAESAADRDAGIERLGGGQWQLIISEIPYQVPKGKLIEQIA 300

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           ++I  K++P+LED+RDES E +RIVL P++R++DP+LL ES++ L+D+ETRF LNMNVL 
Sbjct: 301 QVIADKKVPILEDVRDESDEQIRIVLVPRSRNVDPELLKESLYRLTDLETRFGLNMNVLD 360

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
             R P VM L  +L+ W+A + ++L RR+  R+  I  R+E+L+G +IA+LN+D +I II
Sbjct: 361 ATRTPMVMGLKELLQNWIASQIDILQRRTRHRLAKIADRLELLEGYIIAFLNLDRVIEII 420

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R ED+PKPVM++ F LT+ Q +AILN+RLRSLRKLEE Q++ E D+LL E++++  LL S
Sbjct: 421 RTEDEPKPVMMAEFGLTDRQTEAILNMRLRSLRKLEEMQLRQEKDDLLKEQDELQKLLES 480

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +Q  ++  ++  +++ + K T LG RRTT  E           AMIEKEP TV++S R
Sbjct: 481 PVRQRTRLKRDLNALRKEYGKDTALGARRTTIDEAEPT-VEFSMDAMIEKEPTTVILSAR 539

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           GWIR+ K H+       FKEGD L  A HA TTD++L+ + DG+ YTL A  L   RG G
Sbjct: 540 GWIRAAKGHADLSQEWKFKEGDELAFAFHAQTTDKLLIATDDGRFYTLGADKLPGARGFG 599

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           E ++ ++D++++  IV A+ +    +LL+ S+ G  F+++  +++A TRKG+  + +  +
Sbjct: 600 EPVRTMVDIDNSAHIVFAWAHKPGERLLLASTLGKGFVIKSDDLLAETRKGRAVMTLKGD 659

Query: 648 EKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI 705
            K+  V  +    DHVAVVG+NRKL++F+++++PEMSRG+GV+LQ Y+DGG++DV  F++
Sbjct: 660 AKLARVAHIGEGHDHVAVVGDNRKLVVFNLEEMPEMSRGQGVQLQRYRDGGMADVTTFRL 719

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            EGL+W         R+E ++  W   RGG G + P+GFPR  +F
Sbjct: 720 EEGLSWQMGGTGERTRTEMEMWQWKVARGGAGRMPPQGFPRDNRF 764


>gi|327398179|ref|YP_004339048.1| DNA gyrase subunit A [Hippea maritima DSM 10411]
 gi|327180808|gb|AEA32989.1| DNA gyrase, A subunit [Hippea maritima DSM 10411]
          Length = 812

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 235/753 (31%), Positives = 385/753 (51%), Gaps = 13/753 (1%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   ++N+  V ++  +++ YL Y++S I  RAIPD RDG KPVHRRI++AM E+ L+  
Sbjct: 3   DLFSDKNIFPVDIKDTMQQSYLDYSMSVIVGRAIPDARDGLKPVHRRILYAMKELNLEHN 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSAR+VG+VIGK HPHGD +VYD+LVR++Q F  RYPLI GQGNFG++DGDS AA 
Sbjct: 63  KPYKKSARVVGDVIGKYHPHGDMAVYDALVRMSQDFSMRYPLIDGQGNFGSLDGDSPAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE R++++AE +L+ +D+++VDF   Y++   EP V P+  PNLL NGT GIAVG AT
Sbjct: 123 RYTEVRLSKIAEEMLKDLDKNSVDFVPNYDDSLKEPSVLPTFIPNLLMNGTDGIAVGFAT 182

Query: 190 SIPSHNVQEICEAA-LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            IP +N+ EI +A    L  + EIS +++L YI GPDFPTGG I    +SI E+Y+ G G
Sbjct: 183 KIPPNNLAEIIDACLAYLDKDGEISTDEILNYIKGPDFPTGG-ICFDIKSIKEAYKKGIG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+   E++      +VV EIPYQV K+ L++ IA+L+  K++  + D+RDES ++
Sbjct: 242 KITLRAKVKEEKIK-NRQALVVYEIPYQVNKALLLQSIAQLVKDKKVEGIADLRDESNKE 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +   P +++  +F  ++++T F +NM  L  G  P+++ +   +  ++ HR
Sbjct: 301 GVRIVIEIKKDEQPKVILNKLFKYTNLQTTFGVNMMALV-GNTPRLLNIKDAIGVFVEHR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTE 425
            +V+ RR+SF +     R  IL+GLLI   NIDE++AII++    +        RF L++
Sbjct: 360 IDVVKRRTSFLLSKAKDRAHILEGLLITLDNIDEVVAIIKSSQSTQEARSRLKERFKLSD 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++L  L  LE+ ++  E + +L + E  +S+L         I  E+  VK+ 
Sbjct: 420 RQTQAILDMKLARLVALEKQKLIDEYNQVLKDIEYYESILKDRSVLKGVIKDELVYVKQT 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           ++         +             Q  +   +   V         +         A  F
Sbjct: 480 YADERKTQILDSIVDIGIEDVIKDEQLIITFSKKGYVKAVPLDVYSTQHRGGKGRMAATF 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
            + D +      ++ + +L  +  G+ Y++ A N+       +   I  +++L   + + 
Sbjct: 540 SDNDYITDIFLTNSLNTLLCFTNLGRVYSVKAYNIPKQSPSAKGRPIVNILNLQPQEFVK 599

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVA 662
           T         L   ++ G                GK  ++++ ++ +  V  V  GD V 
Sbjct: 600 TIVPISEADSLFFATAAGTVKRSSFRHFENIPSNGKIAIRLNEQDSLVSVFSVAEGDEVI 659

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYN 720
           +       + F  D + +M R   GVR  +  +G  +     F   +    I  +     
Sbjct: 660 ITTRRGMCVRFDSDSVRDMGRAAAGVRGINLSEGDSVVSAFNFNQDKHTKLIVVSQTGLG 719

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +           RG  G    K    +     S
Sbjct: 720 KLLRVSDIRKVNRGAKGVRCIKLKE-NDSVAGS 751



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 132/413 (31%), Gaps = 27/413 (6%)

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S    + +L  K   L      + I   + +        ++L    V + +  D ++   
Sbjct: 418 SDRQTQAILDMKLARLVALEKQKLIDEYNQVLKDIEYYESILKDRSVLKGVIKDELVYVK 477

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI-IRNEDKPKPVMVSRFSL 423
             +  E   +     +      V   + L+I +     + A+ +            R + 
Sbjct: 478 QTYADERKTQILDSIVDIGIEDVIKDEQLIITFSKKGYVKAVPLDVYSTQHRGGKGRMAA 537

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T +  D I ++    L       +       +   +  +    S   +   I   +    
Sbjct: 538 TFSDNDYITDI---FLTNSLNTLLCFTNLGRVYSVKAYNIPKQSPSAKGRPIVNILNL-- 592

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
               +  +  +      E                   TV  S+     ++ S+     A+
Sbjct: 593 ----QPQEFVKTIVPISEA--------DSLFFATAAGTVKRSSFRHFENIPSN--GKIAI 638

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
              E DSL         D +++ +  G        + +   G   A    I+L+    +V
Sbjct: 639 RLNEQDSLVSVFSVAEGDEVIITTRRGMCVRFD-SDSVRDMGRAAAGVRGINLSEGDSVV 697

Query: 604 TAFVYDSTC--KLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTGD 659
           +AF ++     KL+VVS  G   ++  S+I    R  KG   +K+   + +   + +   
Sbjct: 698 SAFNFNQDKHTKLIVVSQTGLGKLLRVSDIRKVNRGAKGVRCIKLKENDSVAGSLSLKDT 757

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT 710
             V VV +N K++    D I   SR  +GV+L +  +      I     E   
Sbjct: 758 GDVIVVTKNGKMIKMDADSINVFSRAARGVKLINLDEADSVVSIVVAGSEDEY 810


>gi|314963863|gb|EFT07963.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA1]
          Length = 902

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 232/791 (29%), Positives = 376/791 (47%), Gaps = 49/791 (6%)

Query: 1   MGVDNISNSNTLVEEN---------VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+     +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G  ++  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGA-LIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+S+    + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VD-NVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +           + E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+ +          K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSGRGHGEAIQ-----LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               L                  +       ++T   YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGREARGGHVAGLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-K 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFK----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           GV    ++       +         +      + G  Y +           RGGVG    
Sbjct: 711 GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAM 770

Query: 742 KGFPRSGKFLS 752
                 G  + 
Sbjct: 771 ALSEERGSLVG 781


>gi|325961457|ref|YP_004239363.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467544|gb|ADX71229.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3]
          Length = 892

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 227/770 (29%), Positives = 388/770 (50%), Gaps = 36/770 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              ++ + V+ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 21  EGDVLVDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRP 80

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             +F K AR+VGEV+G+ HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+   D AAA
Sbjct: 81  DRSFNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAA 140

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +++ +DE+ VDF+D Y+ ++ EP + P++FPNLL NG+SGIAVGMA
Sbjct: 141 PRYTETKMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGIAVGMA 200

Query: 189 TSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           T+IP HN++E+ +     + NP    E  +E+LL  + GPDFPTG  I+   + I ++YR
Sbjct: 201 TNIPPHNLREVADGVQWYLANPGASREELLEELLLRVKGPDFPTGATIL-GHKGIEDAYR 259

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA   VEE+ +G  C+VVTE+PYQ     L  KIAEL+   +I  + D+RDE
Sbjct: 260 TGRGSVTMRAVVNVEEL-QGRTCLVVTELPYQANPDNLAIKIAELVKDGKIQGIADLRDE 318

Query: 305 SA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++    + ++    R     +++ +++  +++++ F  NM  +    VP+ + LD  ++ 
Sbjct: 319 TSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIVD-GVPRTLSLDAFIRH 377

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF-- 421
           W+ H+ +V+ RR+ +R++  +    IL+ LL A   +DE+IA+IR  +  +         
Sbjct: 378 WVTHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAARDGLMEL 437

Query: 422 -SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q  AIL+++LR L  LE  +I+     L A   + + +L S ++Q   I+ E+ 
Sbjct: 438 LDIDELQARAILDMQLRRLAALERQKIQDRHAELEALIAEYNEILGSEQRQREIISTELG 497

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-- 538
           E+ +          RRT        D     + +I +E + V I+  G+++  +S +   
Sbjct: 498 EIVDKHGD-----DRRTRIL--MGFDGDMSMEDLIPEEEMVVTITRGGYVKRTRSDNYRS 550

Query: 539 ------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AI 590
                  +     +  D ++      T   +L  +  G+ Y   A  L+      +   +
Sbjct: 551 QQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELMEAGRDAKGQHV 610

Query: 591 QLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+    ++ I              L++ + +G        +   N   G   + +   
Sbjct: 611 ANLMAFQPDEHIAQVLDLKDYQQAPYLVLATKRGLVKKTRLEDYDTNRSAGVIAINLRDG 670

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIF--SIDQIPEMSRG-KGVRLQSYKDGGISDVICF 703
           +++     V+  D + +V    + + F  + D +  M R   GV    +++         
Sbjct: 671 DELVSAQLVSETDDLLLVSRKGQSIRFTATEDALRPMGRATSGVTGMKFREDDELLAANV 730

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +G          Y +        L  RGG+G  V K     G  + +
Sbjct: 731 -VTDGSFVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVAKLAEERGDLVGA 779



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 68/191 (35%), Gaps = 6/191 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG-NLLSGR 584
                    + S  + A++ ++GD L  A     TD +LL+S  G++    A  + L   
Sbjct: 648 KTRLEDYDTNRSAGVIAINLRDGDELVSAQLVSETDDLLLVSRKGQSIRFTATEDALRPM 707

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFL 642
           G   +    +    + +++ A V      + +V+  G A      E     R G      
Sbjct: 708 GRATSGVTGMKFREDDELLAANVVTDGSFVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVA 767

Query: 643 KVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           K++    + +  ++    D V VV E  K++  S+  +P   R   GV            
Sbjct: 768 KLAEERGDLVGALIVQEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVIFAKPDKNDRII 827

Query: 700 VICFKICEGLT 710
            +      G+ 
Sbjct: 828 EVARNSERGIE 838


>gi|209964380|ref|YP_002297295.1| DNA gyrase, A subunit [Rhodospirillum centenum SW]
 gi|209957846|gb|ACI98482.1| DNA gyrase, A subunit [Rhodospirillum centenum SW]
          Length = 922

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 256/850 (30%), Positives = 405/850 (47%), Gaps = 116/850 (13%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S      ++  +++   +   YL YA+S I  RA+PD+RDG KPVHRRI++AM + G D 
Sbjct: 3   STIPTPSDISPITIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKDGGYDS 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD ++YD++VR+AQ F  R PLI GQGN+G++DGD  AA
Sbjct: 63  TKPYKKSARIVGDVMGKYHPHGDGAIYDAMVRMAQDFSMRLPLIDGQGNYGSMDGDPPAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+ + AE +L  +D++ VDF+  Y+E   EP V P+KFPNLL NG  GIAVGMA
Sbjct: 123 MRYTEARLAKAAEFLLDDIDKETVDFQPNYDESSLEPTVLPAKFPNLLVNGAGGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP+HN+ E+ +A  A IDNPEI+I++L++ + GPDFPTG  ++  R  I  +Y  GRG
Sbjct: 183 TNIPTHNLGEVIDACCAYIDNPEITIDELIDIVPGPDFPTGA-LILGRSGIRSAYHTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE+ +  W IVVTEIPYQV K++L E+IAE++  K +  + D+RDES  D
Sbjct: 242 SIVMRAKTDIEEIRKDRWAIVVTEIPYQVNKAKLQERIAEVVHEKLVEGISDVRDESDRD 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R    D+++  +F  + ++T F +NM  L+ G  P+++ L  I+  ++  R
Sbjct: 302 GVRVVIELKRDAVADVVLNQLFRFTPLQTSFGVNMLALN-GGRPELLDLKSIIAAFVRFR 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------ 422
            +V+ RR+ F +     R   L GL +A  NIDE+IA+IRN   P        +      
Sbjct: 361 EQVITRRTEFELGKARERAHTLVGLAVAVANIDEMIALIRNAPDPGTAREQMMAREWPAL 420

Query: 423 -----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  L+E Q  AIL+LRL  L  LE  +I  EL+ ++ +  
Sbjct: 421 DVAPLIQLIDEPGRGLSEAGTYRLSEGQAKAILDLRLHRLTGLERDKISEELNQVVDQIR 480

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            + ++L       + +  E+ ++K  F        RRTT  E+         + +I++E 
Sbjct: 481 HLLAILADRGLLLDILRGELVDMKARFGNP-----RRTTIEELEFE---ADVEDLIQRED 532

Query: 520 ITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V+++  G+I+ +   +           S +  K  D++     A+T   +L  +  G 
Sbjct: 533 MVVIVTQGGYIKRVPVSTYRAQARGGKGRSGMSLKAEDTVSDLFVANTHTPMLFFTNRGM 592

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNA 623
            YTL    L     +  G+A+  L+ L     I T               +L  +S+G  
Sbjct: 593 VYTLKVWRLPQGTPQTRGKALVNLLPLEEGDFITTVMPMPEDQASWGDLHVLFATSRGGV 652

Query: 624 FIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                S+       G   +K+    E++      +  D V +     + + F + +I   
Sbjct: 653 RRNRLSDFANIRSNGLIAMKLEEEGERLIAARPCSEADDVLLSTRLGRCIRFPVGEIRVF 712

Query: 682 -SRG-KGVRLQSYKDGGISDV--------------------------------------- 700
             R   GVR     + G   +                                       
Sbjct: 713 SGRTSTGVRGIKLVEDGDEVIGMSILRHTDYSAEQRAAYLKQARQLRQAMGEPTDADEAP 772

Query: 701 --------ICFKICEGLTW---------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                       + + L           +  + + + +  +     L  RGG G      
Sbjct: 773 DVEAEPVETSLVLPQELFIEMQAAEEIILTVSEQGFGKRTSAYEYRLTGRGGQGIWNMDM 832

Query: 744 FPRSGKFLSS 753
             R+ K +++
Sbjct: 833 GERN-KAIAA 841



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 5/99 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRK 669
           +L VS +G        E     R G+    +   E+   +  V  ++  D V ++ +N +
Sbjct: 800 ILTVSEQGFGKRTSAYEYRLTGRGGQGIWNMDMGERNKAIAAVFPISETDQVMMISDNGQ 859

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           ++   +  I    R  KGV L           +     E
Sbjct: 860 VIRMPVHDIRLTGRKSKGVTLFRLGPDERVVSVARLAEE 898



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 46/218 (21%), Gaps = 63/218 (28%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE---IIANTRKGKTFLKV-SSEEKMKL 652
              + ++ A        +L+ +  G        E       T  G   +K+    +++  
Sbjct: 675 EEGERLIAARPCSEADDVLLSTRLGRCIRFPVGEIRVFSGRTSTGVRGIKLVEDGDEVIG 734

Query: 653 VV----------------------------KVTGDH------------------------ 660
           +                                 D                         
Sbjct: 735 MSILRHTDYSAEQRAAYLKQARQLRQAMGEPTDADEAPDVEAEPVETSLVLPQELFIEMQ 794

Query: 661 -----VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                +  V E       S  +     RG +G+      +   +    F I E    +  
Sbjct: 795 AAEEIILTVSEQGFGKRTSAYEYRLTGRGGQGIWNMDMGERNKAIAAVFPISETDQVMMI 854

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +              L  R   G  + +  P   + +S
Sbjct: 855 SDNGQVIRMPVHDIRLTGRKSKGVTLFRLGP-DERVVS 891



 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            +S  G      A         G+ I  +     N+ I   F    T +++++S  G   
Sbjct: 802 TVSEQGFGKRTSAYEYRLTGRGGQGIWNMDMGERNKAIAAVFPISETDQVMMISDNGQVI 861

Query: 625 IVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +   +  +     KG T  ++  +E++  V ++  +
Sbjct: 862 RMPVHDIRLTGRKSKGVTLFRLGPDERVVSVARLAEE 898


>gi|261392342|emb|CAX49878.1| DNA gyrase subunit A [Neisseria meningitidis 8013]
          Length = 916

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 239/851 (28%), Positives = 400/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKDK 418

Query: 419 --------------------------------------SRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L+  +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTWIDSA 715
              +     D++
Sbjct: 893 VAEDESELSDAS 904



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 794 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 853

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 854 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 883


>gi|159903668|ref|YP_001551012.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9211]
 gi|159888844|gb|ABX09058.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
          Length = 881

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 240/795 (30%), Positives = 388/795 (48%), Gaps = 65/795 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E+ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  FEDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL+ G GNFG+ID D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLVDGHGNFGSIDNDPPAAMRYT 134

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +    +L+ ++ + VDF D ++    EP V P++ P LL NG+SGIAVGMAT+I
Sbjct: 135 ESRLQSLTTESLLEDIESETVDFLDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ E  +ALI NPE++  +L + I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 195 PPHNLGELIEGLMALISNPELTNNELFKIIQGPDFPTGGQIL-GRNGIQETYLTGRGSVT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++T++PYQ  K+ LIE+IA+++  K++  + DIRDES  
Sbjct: 254 MRGVADIETIEVAGRPDRDAVIITQLPYQTNKAALIERIADMVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  NM  L     P  + L  +L+ +L  
Sbjct: 314 DGMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVD-GEPVTLSLLRMLQVFLDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLT 424
           R E + RR+S+ ++  + R  +L GLL+A   +D II +IR        K  +     LT
Sbjct: 373 RVETIERRTSYLLRKAEERNHLLLGLLVALDQLDPIIELIRAASDTSVAKAKLQELHRLT 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I+ E ++LL        +L +  + ++ I  E+ ++KE
Sbjct: 433 EVQADAILQMQLRRLTALEADKIRLEHEDLLKRIADFQDILANKPRVFDLIKKELIQLKE 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SH 536
            +        RRT   ++           +I  E   V+++  G+++ +           
Sbjct: 493 KYEAP-----RRTEILDLGGG---IDDIDLIANERSVVLLTETGYLKRMPVNQFEATSRG 544

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
           +   S    +  + +K+ +  +  D +LL S  G AY+LPA  +       +   +  L+
Sbjct: 545 TRGKSGTRSQGEEEVKLFISCNDHDNLLLFSDRGVAYSLPAYRVPISSRSAKGTPVVQLL 604

Query: 595 DLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I +      +D    LL+++  G       S        G   + +   + + 
Sbjct: 605 PIPREEAITSLLSVSSFDDDNHLLMLTKGGYIKRTLVSAFSKIRANGLIAISLEDGDALT 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGGISDVICFK--- 704
            V    +GD V +       + F +  D++  + R  +GVR  + + G     +      
Sbjct: 665 WVRLAASGDSVLIGSRKGMTIHFRLNDDELRPLGRTARGVRSMNLRKGDSLVGMDVLPRE 724

Query: 705 ---------------------------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
                                      I EG   + ++     +        L KR G+G
Sbjct: 725 LADRIAGTNNDDSDSDSDSDSDSDEVGIAEGPWVLVASASGLGKRVPVTQFRLQKRAGMG 784

Query: 738 SLVPKGFPRSGKFLS 752
               K        + 
Sbjct: 785 LRAIKFRNDGDSLVG 799



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS-SEEKMKLVVKV-TGDHVAVVG 665
               +LV S+ G    V  ++     R   G   +K     + +  +  +  G+ +  V 
Sbjct: 754 EGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAIKFRNDGDSLVGLKVLGHGEELLFVT 813

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           E   ++  S D+I + SR   GVRLQ    G     +     E
Sbjct: 814 EKGIIVRTSADKISQQSRAATGVRLQRLDSGDHLSEVVLVPPE 856


>gi|289424188|ref|ZP_06425971.1| DNA gyrase, A subunit [Propionibacterium acnes SK187]
 gi|289427431|ref|ZP_06429144.1| DNA gyrase, A subunit [Propionibacterium acnes J165]
 gi|289154885|gb|EFD03567.1| DNA gyrase, A subunit [Propionibacterium acnes SK187]
 gi|289159361|gb|EFD07552.1| DNA gyrase, A subunit [Propionibacterium acnes J165]
 gi|313792558|gb|EFS40644.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA1]
 gi|313803560|gb|EFS44742.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA2]
 gi|313806866|gb|EFS45364.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA2]
 gi|313814212|gb|EFS51926.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA1]
 gi|313815428|gb|EFS53142.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA1]
 gi|313817653|gb|EFS55367.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA2]
 gi|313821522|gb|EFS59236.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA1]
 gi|313824534|gb|EFS62248.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA2]
 gi|313826202|gb|EFS63916.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA1]
 gi|313828993|gb|EFS66707.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA2]
 gi|314916224|gb|EFS80055.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA4]
 gi|314926323|gb|EFS90154.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA3]
 gi|314930908|gb|EFS94739.1| DNA gyrase, A subunit [Propionibacterium acnes HL067PA1]
 gi|314955296|gb|EFS99701.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA1]
 gi|314959169|gb|EFT03271.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA1]
 gi|314961672|gb|EFT05773.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA2]
 gi|314969072|gb|EFT13170.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA1]
 gi|314980247|gb|EFT24341.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA2]
 gi|314987103|gb|EFT31195.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA2]
 gi|314990696|gb|EFT34787.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA3]
 gi|315079003|gb|EFT51015.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA2]
 gi|315081488|gb|EFT53464.1| DNA gyrase, A subunit [Propionibacterium acnes HL078PA1]
 gi|315083090|gb|EFT55066.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA2]
 gi|315086623|gb|EFT58599.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA3]
 gi|315088024|gb|EFT60000.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA1]
 gi|315099332|gb|EFT71308.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA2]
 gi|315109855|gb|EFT81831.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA2]
 gi|327333682|gb|EGE75399.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3]
 gi|327444459|gb|EGE91113.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA2]
 gi|327457405|gb|EGF04060.1| DNA gyrase, A subunit [Propionibacterium acnes HL092PA1]
 gi|328757966|gb|EGF71582.1| DNA gyrase, A subunit [Propionibacterium acnes HL020PA1]
 gi|328758864|gb|EGF72480.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA2]
 gi|332674409|gb|AEE71225.1| DNA gyrase subunit A [Propionibacterium acnes 266]
          Length = 891

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 232/791 (29%), Positives = 376/791 (47%), Gaps = 49/791 (6%)

Query: 1   MGVDNISNSNTLVEEN---------VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+     +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G  ++  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGA-LIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+S+    + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VD-NVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +           + E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+ +          K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSGRGHGEAIQ-----LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               L                  +       ++T   YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-K 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFK----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           GV    ++       +         +      + G  Y +           RGGVG    
Sbjct: 711 GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAM 770

Query: 742 KGFPRSGKFLS 752
                 G  + 
Sbjct: 771 ALSEERGSLVG 781


>gi|313765015|gb|EFS36379.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA1]
 gi|314917491|gb|EFS81322.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA1]
 gi|314921827|gb|EFS85658.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA3]
 gi|315102328|gb|EFT74304.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA1]
 gi|327454262|gb|EGF00917.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA3]
 gi|327456323|gb|EGF02978.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA2]
 gi|328756020|gb|EGF69636.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA1]
          Length = 891

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 232/791 (29%), Positives = 376/791 (47%), Gaps = 49/791 (6%)

Query: 1   MGVDNISNSNTLVEEN---------VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+     +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G  ++  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGA-LIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+S+    + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VD-NVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +           + E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+ +          K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSGRGHGEAIQ-----LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               L                  +       ++T   YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-K 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFK----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           GV    ++       +         +      + G  Y +           RGGVG    
Sbjct: 711 GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAM 770

Query: 742 KGFPRSGKFLS 752
                 G  + 
Sbjct: 771 ALSEERGSLVG 781


>gi|261380731|ref|ZP_05985304.1| DNA gyrase, A subunit [Neisseria subflava NJ9703]
 gi|284796448|gb|EFC51795.1| DNA gyrase, A subunit [Neisseria subflava NJ9703]
          Length = 923

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 237/852 (27%), Positives = 400/852 (46%), Gaps = 116/852 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ +A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D PE  I++L+  I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI EL+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES +    V+    R+ + ++++  ++ ++ ++  F +NM  L     P+++ L  
Sbjct: 300 DLRDESDKSGMRVVIELKRNENAEVVLNQLYKMTQLQDSFGINMVALVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLSRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I  E  NL+++      +L+  ++    I  E+ ++K  F        RR+   
Sbjct: 479 GLDQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS-------------------------------IDQIPEMSRGKGVR------- 688
             K + F+                                + +P   +  GVR       
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENALPS-GK-HGVRPSGRGSG 768

Query: 689 ---LQSYKD-GGISDVICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                     G I  +I F        L  + +    Y +           +GG G++  
Sbjct: 769 GLRGMRLPAYGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 742 KGFPRSGKFLSS 753
               R+G  +++
Sbjct: 829 NTGERNGDLVAA 840



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 45/113 (39%), Gaps = 10/113 (8%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L     IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPAYGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +   +     V+  D + ++     L+   ++QI E  R   GVRL +  +G 
Sbjct: 833 RNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEGE 885



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 20/89 (22%), Gaps = 5/89 (5%)

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWIDSAG 716
            V     N       I      ++G +G    +   ++G +         + L  I S  
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVSETDDLMLITSG- 855

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                           R   G  +     
Sbjct: 856 -GVLIRTKVEQIRETGRAAAGVRLINLDE 883



 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVSETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
                +  +I    R   G   + +   E +  
Sbjct: 857 VLIRTKVEQIRETGRAAAGVRLINLDEGETLVS 889


>gi|282853047|ref|ZP_06262384.1| DNA gyrase, A subunit [Propionibacterium acnes J139]
 gi|282582500|gb|EFB87880.1| DNA gyrase, A subunit [Propionibacterium acnes J139]
 gi|314982913|gb|EFT27005.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA3]
 gi|315091219|gb|EFT63195.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA4]
          Length = 891

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 232/791 (29%), Positives = 377/791 (47%), Gaps = 49/791 (6%)

Query: 1   MGVDNISNSNTLVEEN---------VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+     +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G  ++  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGA-LIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+S+    + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VD-NVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +           + E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+ +          K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSGRGHGEAIQ-----LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               L                  +       ++T   YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-K 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFK----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           GV    ++       +         +      + G  Y +          +RGGVG    
Sbjct: 711 GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQRRGGVGIKAM 770

Query: 742 KGFPRSGKFLS 752
                 G  + 
Sbjct: 771 ALSEERGSLVG 781


>gi|313839632|gb|EFS77346.1| DNA gyrase, A subunit [Propionibacterium acnes HL086PA1]
          Length = 891

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 232/791 (29%), Positives = 376/791 (47%), Gaps = 49/791 (6%)

Query: 1   MGVDNISNSNTLVEEN---------VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+     +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G  ++  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGA-LIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+S+    + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VD-NVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +           + E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+ +          K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSGRGHGEAIQ-----LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               L                  +       ++T   YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-K 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFK----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           GV    ++       +         +      + G  Y +           RGGVG    
Sbjct: 711 GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAM 770

Query: 742 KGFPRSGKFLS 752
                 G  + 
Sbjct: 771 ALSEERGSLVG 781


>gi|257457902|ref|ZP_05623061.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580]
 gi|257444615|gb|EEV19699.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580]
          Length = 838

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 237/759 (31%), Positives = 384/759 (50%), Gaps = 16/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     +  +S+   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E  
Sbjct: 1   MEEIKTPEGGVLIPISIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +    +K A+IVG+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD 
Sbjct: 61  LRYSGPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AAYRYTEA+M ++AE +++ + +D VDF   +++   EP V P KFP LLANG+SGIAV
Sbjct: 121 PAAYRYTEAKMARLAESMVEDIKKDTVDFIPNFDDSTQEPTVLPGKFPFLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN++EI +A  A IDNP+I+I++L +YI GPDFPTGG I+  ++ I ++++ 
Sbjct: 181 GMATNMPPHNLREIAQAVSAYIDNPDITIDELAKYIKGPDFPTGG-IIFGKKGIRQAFKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG   VR R+ +E   +G   I+ TE+PYQV  + L+ KI EL   K I  +  + DE 
Sbjct: 240 GRGKILVRGRFNIEVDKKGKETIIFTEVPYQVNTTALVSKIGELAREKVIEGIAAVNDET 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      ++    R     +++  +F  + +++ F +    L  G  PQ + L  ++  +
Sbjct: 300 SDRAGLRLVIELKRGAIAKVVLNQLFSKTALQSSFGVINLALV-GGRPQTLTLKQLVGYF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           +AHR+EV+ RR  F ++  + R  IL+ L++A  NIDE+I IIR        K  ++ RF
Sbjct: 359 VAHRQEVVTRRVRFDLKKAEERAHILRALIVAIDNIDEVIKIIRGSRDTASAKNALMERF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           S  + Q  AI++++L+ L  LE   ++ EL  L    E +  LL   ++    I  E  E
Sbjct: 419 SFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELEVLIEHLKDLLAHPEKILALIKQETNE 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-ITVVISNRGWIRSLKSHSVDL 540
           + E F              E++  D    +Q ++       +        +         
Sbjct: 479 LAEKFGDDRRTDIVSDEVEEINIEDLIKKEQMVVLVSNLGYIKRVPVTAYKRQNRGGKGS 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
           ++    E D +     A T D I+ ++ +GKAY +    +           I+ L+ ++ 
Sbjct: 539 NSAALVEDDFIDQIFTASTHDYIMFITNEGKAYWVKVHEIPEASRTSRGSHIKSLLAVSS 598

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           +++I T      + S   LL+ ++ G    V+         +G   +K+   +K+   + 
Sbjct: 599 DEEITTIVSLKEFSSDTYLLMATAGGIVKKVQTDSFQNAKTRGIIAIKLDEGDKLVSAIL 658

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
            TG D + +V    + L  S  +I +  R   GV       G   ++           + 
Sbjct: 659 TTGKDELMLVTRQGQALRVSEAEIRDQGRASHGVIGIRLSGGD--ELTGALRINNGKLLV 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +   Y +  +        RG  G  V     ++G+ + 
Sbjct: 717 MSENGYGKRVDFSEFSPHGRGTGGQKVYTVTEKTGEVVG 755



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 72/195 (36%), Gaps = 8/195 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++          + +  + A+   EGD L  A+     D ++L++  G+A  +    +  
Sbjct: 625 IVKKVQTDSFQNAKTRGIIAIKLDEGDKLVSAILTTGKDELMLVTRQGQALRVSEAEIRD 684

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKT 640
                    + I L+   ++  A   +   KLLV+S  G    V+ SE   + R   G+ 
Sbjct: 685 QGRAS-HGVIGIRLSGGDELTGALRIN-NGKLLVMSENGYGKRVDFSEFSPHGRGTGGQK 742

Query: 641 FLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGG 696
              V   + E + L+     D +  +    K +   +  I  M R  +GVR+   +    
Sbjct: 743 VYTVTEKTGEVVGLLAVADDDEIVCITGQGKTIRVQVSSINVMGRAAQGVRILDIESPDQ 802

Query: 697 ISDVICFKICEGLTW 711
           +  +      +  + 
Sbjct: 803 LIGLDVVAREDEESI 817


>gi|325267296|ref|ZP_08133958.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella
           denitrificans ATCC 33394]
 gi|324981233|gb|EGC16883.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella
           denitrificans ATCC 33394]
          Length = 902

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 236/843 (27%), Positives = 401/843 (47%), Gaps = 104/843 (12%)

Query: 6   ISNSNT-LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++ +N     +    VSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+
Sbjct: 1   MTGANDHQFAKETIPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
             ++ +A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DGD
Sbjct: 61  KNNWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSVDGD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           +AAA RYTE RM ++A  +L  ++E+ V+F D Y+  + EP+V P++FP LL NG+ GIA
Sbjct: 121 AAAAMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMATSIP HN+++     L L+++PE  I++L++ +  PDFPTG  I      I   Y+
Sbjct: 181 VGMATSIPPHNLRDTLAGCLKLLNDPETGIDELIDIVKAPDFPTGATIY-GLTGIRAGYQ 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            GRG   +R++  +E +G+      IVV EIPYQV KS+L+EKI EL+  K +  + ++R
Sbjct: 240 TGRGRVVIRSKSHIEPIGKNGEREAIVVDEIPYQVNKSKLVEKIGELVREKTVEGIAELR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R  + ++++  ++ L+ ++  F +NM  L     P+++ L  IL 
Sbjct: 300 DESDKDGTRIVIELKRGENAEVVLNQLYKLTQLQDTFSINMVALVD-GQPRLLNLKQILN 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------ 416
           E+L HRREV+ RR+ FR++       I +G  +A  NIDE+IA+I+              
Sbjct: 359 EFLRHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASADVDAAREALMG 418

Query: 417 ---------------------------------MVSRFSLTENQVDAILNLRLRSLRKLE 443
                                                + L++ Q  AIL + LR+L  L+
Sbjct: 419 RAWQSALVSEMLSRSDLDLTLARPEWLPENRGLHPDGYWLSDEQARAILRMSLRNLTGLD 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + +I  E  +L+     +  +L   ++    I  E+ E++  F        RR+      
Sbjct: 479 QDEIVKEYKSLMDIIMDLLDILAKPERVRQIIEGELVEMQTQFGDE-----RRSEI--NP 531

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
                   + +I    + V +++ G+         ++ K       A   K+ D ++   
Sbjct: 532 FGGGDIADEDLIPPREMVVTLTHGGYIKTQPTSDYQAQKRGGRGKQAAATKDEDFIETLF 591

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDS 610
            A+T D ++  +  G+ + +    L        G  I  +I L+  + +        +  
Sbjct: 592 VANTHDYLMCFTNLGRCHWIKVYRLPEGGRNSRGRPINNVIQLDDGEKVSAILPVREFPE 651

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRK 669
              +   ++ G    V+ S     + KG   + +   + +  V K +G   + +     K
Sbjct: 652 DEYVFFATAMGVVKKVQLSAFKNVSVKGIKAIALKEGDSLVGVAKTSGSSDIMLFSNLGK 711

Query: 670 LLIFS-------------IDQIP---------------EMSRGKGVR----------LQS 691
            + F+              + +                 +   KGVR             
Sbjct: 712 AIRFNEYWAGGAGDEDEAENDVSGSLQQDEEDGGETEFNLQTNKGVRPSGRGSGGLRGMR 771

Query: 692 YKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             + G I  ++  +I   L  + +    Y +           +GG G +      R+G+ 
Sbjct: 772 LPENGRIVSLLTAEIGSDLQVLTATQNGYGKRTPIADYTRKGKGGQGIIAIDTGERNGEL 831

Query: 751 LSS 753
           + +
Sbjct: 832 IGA 834



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESE 630
           + L     +   G G      + L  N  IV+    +  S  ++L  +  G       ++
Sbjct: 749 FNLQTNKGVRPSGRGSGGLRGMRLPENGRIVSLLTAEIGSDLQVLTATQNGYGKRTPIAD 808

Query: 631 IIANTRKGKTFLKVSSEE---KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                + G+  + + + E   ++   V V+  D + ++     L+   ++Q+ E  R   
Sbjct: 809 YTRKGKGGQGIIAIDTGERNGELIGAVLVSPADDLMLITSGGVLIRTKVEQVRETGRAAA 868

Query: 686 GVRLQSYKDG 695
           GVRL +  +G
Sbjct: 869 GVRLINLDEG 878


>gi|29830865|ref|NP_825499.1| DNA gyrase subunit A [Streptomyces avermitilis MA-4680]
 gi|29607978|dbj|BAC72034.1| putative DNA gyrase subunit A [Streptomyces avermitilis MA-4680]
          Length = 864

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 237/778 (30%), Positives = 391/778 (50%), Gaps = 29/778 (3%)

Query: 1   MGVDNISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  +N  ++     E    V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+
Sbjct: 1   MTDENTPSTPEEEGEIALRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GN
Sbjct: 61  LYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+   D AAA RYTE +M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL 
Sbjct: 121 FGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIV 233
           NG++GIAVGMAT+IP HN++E+   A   ++NPE S E+    L+E I GPDFP+G  +V
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVASGAQWYLENPEASHEELLDALIERIKGPDFPSGA-LV 239

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   
Sbjct: 240 VGRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDG 298

Query: 294 RIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           ++  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L    VP
Sbjct: 299 KVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GVP 357

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           + + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D 
Sbjct: 358 RTLSLDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDT 417

Query: 413 P---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               +  ++    + E Q +AIL ++LR L  LE  +I  E D L A+  + +++L S  
Sbjct: 418 VEIAREGLMGLLEIDEIQANAILEMQLRRLAALERQKIIQEHDELQAKITEYNAILASPV 477

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +Q   I+ E+  + E +                     A     +       +  +    
Sbjct: 478 RQRGIISEELAAIVEKYGDDRRSKLVPFDGDMSIEDLIAEEDIVVTITRGGYIKRTKTED 537

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
            RS K     +     K+ D +     + T   +L  +  G+ Y   A  L        G
Sbjct: 538 YRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARG 597

Query: 588 EAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L+    ++   +I+    Y++   L++ +  G        +  +    G   + +
Sbjct: 598 QHVANLLAFQPDEAIAEILAIRDYEAVPYLVLATKGGLVKKTPLKDYDSPRSGGVIAINL 657

Query: 645 SS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
                  ++++     V+  D + ++ +  + + F+     +  M R   GV+  S+++G
Sbjct: 658 RETEDGSDDELIGAELVSAEDDLLLISKKAQSIRFTATDEALRPMGRATSGVKGMSFREG 717

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +   +  G     +    Y +        +  RGG+G    K     G  + +
Sbjct: 718 DELLSMNV-VRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 774


>gi|50841504|ref|YP_054731.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|50839106|gb|AAT81773.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|315107488|gb|EFT79464.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA1]
          Length = 891

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 232/791 (29%), Positives = 376/791 (47%), Gaps = 49/791 (6%)

Query: 1   MGVDNISNSNTLVEEN---------VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+     +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G  ++  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGA-LIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+S+    + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VD-NVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +           + E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+ +          K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEMAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSGRGHGEAIQ-----LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               L                  +       ++T   YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-K 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFK----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           GV    ++       +         +      + G  Y +           RGGVG    
Sbjct: 711 GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAM 770

Query: 742 KGFPRSGKFLS 752
                 G  + 
Sbjct: 771 ALSEERGSLVG 781


>gi|300871740|ref|YP_003786613.1| DNA gyrase subunit A [Brachyspira pilosicoli 95/1000]
 gi|300689441|gb|ADK32112.1| DNA gyrase, A subunit [Brachyspira pilosicoli 95/1000]
          Length = 832

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 237/765 (30%), Positives = 403/765 (52%), Gaps = 28/765 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S     + + V  +S+   L+E YL YA+S I  RA+PD+RDG KPVHRRI++AM +  L
Sbjct: 17  STLTKDILKRVDHISIENELKESYLNYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANL 76

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                +KKSA  VGEV+ + HPHGD +VY ++VR+AQ F  RY L+ GQGNFG++D D  
Sbjct: 77  THDKPYKKSAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSVDDDPP 136

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEARMT+ AE +L  ++++ V F   +++  +EP V P+  P LL NG+ GIA+G
Sbjct: 137 AAMRYTEARMTKFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIG 196

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++P HN++E+  A +  ID+ +  I+ L+ YI GPDFPT G I+  +E I E+Y  G
Sbjct: 197 MATNMPPHNLKEVVNAIVYYIDHQDAEIKDLMRYIQGPDFPTAG-IIYGKEGIKEAYTTG 255

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +G  ++RAR  +EE  +    IVV E+PY V K+ L EKIAEL+   +I  + DIRDES+
Sbjct: 256 KGRIKLRARLEIEETKKDREAIVVKELPYGVVKTNLHEKIAELVKQGKIEGVADIRDESS 315

Query: 307 EDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    + +   +++  ++  +D+E  F +    L     P+V+ L  ++K ++
Sbjct: 316 NRSGIRLIIELKKGVATQIVLNQLWKHTDLEITFGIINLALV-NGEPKVLNLKELIKYFV 374

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR EV+ +R+ + +     +  IL+GLLIA  NI+E+I IIR  +     +  ++S+F 
Sbjct: 375 DHRVEVITKRTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRQSENTEAARNTLMSKFK 434

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++ L+ L  LE+ +I+ EL  L       + LL   ++    I  E++ +
Sbjct: 435 LSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLAHPEKILAVIKDELKNI 494

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--- 539
            E +        RR+     +       ++ +I  E + V I+ +G+I+ + + S     
Sbjct: 495 AEKYGD-----DRRSEIIGKTND-TEIDEEDLIHDEDVAVSITTQGFIKRVPASSYRTQG 548

Query: 540 -----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +     +    ++    A T D + + +  GKA+ +    +   +    G++I+ 
Sbjct: 549 RGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALTKTSQGKSIKF 608

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +++L  ++ I + F    ++    +++V+  G    +E   +    ++G   L + + ++
Sbjct: 609 ILNLAPDEKITSYFTVSDFNPKQSIIMVTKMGTIKKMELKHLENAKKRGILALTLENNDE 668

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  V  GD   +   +   L  +  ++  M R   GV+  +  D  I  V    I +
Sbjct: 669 LIGVSAVESGDDFIMTTASGLALRINEQKVRNMGRAAAGVKGITLDDNDI-CVSGNGIHK 727

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           G + I        +  +        RGG G +  K   ++G  +S
Sbjct: 728 GESLIVITENGIGKRLSSKQFNAKGRGGKGQIYIKPDNKTGNVVS 772



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 6/152 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D  ++ +  G A  +    + +      A    I L+ N   V+         L+V++  
Sbjct: 679 DDFIMTTASGLALRINEQKVRNMGRAA-AGVKGITLDDNDICVSGNGIHKGESLIVITEN 737

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSID 676
           G    +   +  A  R GK  + +  + K   VV V      D + VV  +   +    D
Sbjct: 738 GIGKRLSSKQFNAKGRGGKGQIYIKPDNKTGNVVSVKTVGDKDEIMVVTTDDMTIKIKAD 797

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            IPE+ R  KGV++ +  DG     +     +
Sbjct: 798 SIPELGRNAKGVKIVNISDGAKVSDLAVVPAD 829


>gi|75675993|ref|YP_318414.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255]
 gi|74420863|gb|ABA05062.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255]
          Length = 913

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 265/859 (30%), Positives = 400/859 (46%), Gaps = 117/859 (13%)

Query: 1   MGV-DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M   ++           ++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++
Sbjct: 1   MSDIEDTKPEEPPAPSGIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM E G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG
Sbjct: 61  AMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD AAA RYTE+R+T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG
Sbjct: 121 SVDGDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEREPSVLPAKFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +A +ALID+P + I+ L++ I GPDFPTGGII+  R+ I
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACVALIDDPALGIDDLIKIIPGPDFPTGGIIL-GRQGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y LGRG   +R +  ++ + +    IVV+EIPYQV K+ ++E+IAEL+  K+I  + 
Sbjct: 240 RSAYHLGRGSIVMRGKVSIDTIRKDREAIVVSEIPYQVNKASMVERIAELVREKKIDGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  +   V+    R   P++++  ++  + ++T F  NM  L     PQVM L  
Sbjct: 300 DLRDESDREGFRVVVELKRDAVPEIVLNQLYKYTPLQTNFGANMVALD-AGRPQVMNLKD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L  ++A R +V+ RR+ F +     R  IL GL IA  NIDEII +IR    P     +
Sbjct: 359 LLTLFIAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARET 418

Query: 420 RF-----------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                           L+  Q  AIL+LRL+ L  L   +I  E
Sbjct: 419 LMSRDWPAKDVAAMITLIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           LD L  E      +L S  +    I  E+  VK  F+       RRT   E         
Sbjct: 479 LDKLAIEIADYLDILRSRARVQAIIKTELGAVKSEFATP-----RRTVIVEQEGE---VE 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I++E + V +S+ G+++          K      S +  ++ D +     A T   
Sbjct: 531 DEDLIQREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTP 590

Query: 563 ILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KL 614
           +L  S+ G+ Y      L        G+A+  ++ L+  + I T               +
Sbjct: 591 VLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWADLDV 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  ++ G     + S+ +   R G   +K+   E +  V   T  D V +     + + F
Sbjct: 651 MFATTSGTVRRNKLSDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVLLTAAGGQCIRF 710

Query: 674 SIDQIPEM-SRGK-GVRLQSYKDGGISDVICF---------------------------- 703
            +  +     R   GVR  +   G     +                              
Sbjct: 711 PVTDVRVFSGRTSMGVRGIALAKGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGE 770

Query: 704 -------------------KICEGLTW---------IDSAGRSYNRSENDLLGWLGKRGG 735
                               + EG            +      Y +  +     +  RGG
Sbjct: 771 DIEPEEATPEADEAAHTDLSLPEGRYVEMGAAEQFVLTVTTYGYGKRSSSFEFRVSGRGG 830

Query: 736 VGSLV--PKGFPRSGKFLS 752
            G     P      G  ++
Sbjct: 831 KGIRATDPTKLGEIGHLVA 849



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDH 660
           +  +   +L V++ G        E   + R GK        K+     +     V   D 
Sbjct: 799 MGAAEQFVLTVTTYGYGKRSSSFEFRVSGRGGKGIRATDPTKLGEIGHLVAGFPVEMSDQ 858

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
           + +V +  +L+   ++ I   SR  KGVR+ +  DG     +     +G 
Sbjct: 859 IMLVSDGGQLIRVPVEGIRITSRASKGVRVFNTADGEHVVSVEHIREDGE 908



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/214 (10%), Positives = 46/214 (21%), Gaps = 64/214 (29%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE---IIANTRKGKTFLKVSSEEKM 650
           + L   + IV   +      +L+ ++ G       ++       T  G   + ++  +++
Sbjct: 678 MKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSGRTSMGVRGIALAKGDRV 737

Query: 651 KLV------------------------VKVTGDHV------------------------- 661
             +                           TG+ +                         
Sbjct: 738 ISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADEAAHTDLSLPEGRYV 797

Query: 662 ---------AVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD--VICFKICEGL 709
                      V         S  +     RG KG+R       G     V  F +    
Sbjct: 798 EMGAAEQFVLTVTTYGYGKRSSSFEFRVSGRGGKGIRATDPTKLGEIGHLVAGFPVEMSD 857

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             +  +              +  R   G  V   
Sbjct: 858 QIMLVSDGGQLIRVPVEGIRITSRASKGVRVFNT 891


>gi|28542821|gb|AAO42742.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 852

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 246/786 (31%), Positives = 401/786 (51%), Gaps = 50/786 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ ++S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHI-EKKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   + I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHV-- 661
             +D +  L   +  G       SE       G   + +   +++   + V    D +  
Sbjct: 605 TDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFA 664

Query: 662 ---------------------------------AVVGENRKLLIFSIDQIPEMSR-GKGV 687
                                              V +    + F + ++ E+ R  +GV
Sbjct: 665 TGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGV 724

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 725 TAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 784

Query: 747 SGKFLS 752
           +   +S
Sbjct: 785 TKDLIS 790


>gi|193216894|ref|YP_002000136.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1]
 gi|193002217|gb|ACF07432.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1]
          Length = 898

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 248/762 (32%), Positives = 413/762 (54%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              +  ++   L   ++  ++ YA+S I  RA+PD RDG KPVHRRI++ MSE+G+   A
Sbjct: 65  ETEQNGLQPADLAKVMKSSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFHTA 124

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             KKSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPLI G GNFG+IDGD AAA R
Sbjct: 125 PHKKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDEAAAMR 184

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A +++ G+ ++ VDF D Y+  + EP V PS+FPNLL +GTSGIAVGMAT+
Sbjct: 185 YTEARMSKIAGVMVDGIKKNTVDFIDNYDGTEKEPTVLPSRFPNLLVSGTSGIAVGMATN 244

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +A  AL  NPEI+I+ L+E+++ PDFPTG  I  ++  ++E+Y+ GRG  
Sbjct: 245 IPPHNLGEIIDAVCALAKNPEITIDGLMEFVLAPDFPTGATIF-NKAGLIEAYKTGRGSI 303

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  ++E+  G   I++TEIPY+V+K+ ++EKIA+ +  KRI  + D RDES  D  
Sbjct: 304 TMRAKANIQELANGKSKIIITEIPYEVKKTEIMEKIADHLKNKRIEGISDFRDESNRDGI 363

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    ++  P++++ +++ L+ ++T F  NM  L     P+++ L   L+ +L H+ +
Sbjct: 364 RVVIDVKKNAVPEVILNTLYKLTRLQTNFSFNMIALV-NGEPKLLNLKECLQVYLDHQID 422

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V  RR  F ++    R  IL+GL I   NID +I II+        +  +   FSL+E Q
Sbjct: 423 VTRRRLQFDLEKDLARAHILEGLKICVENIDRVIEIIKKSKTDVDAQAKLCQTFSLSEIQ 482

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+++RL  L  L   ++  ELD + A   +  ++L+S ++    I  E++EVKE + 
Sbjct: 483 AKAIVDMRLGRLTGLAIEKMNDELDQVNARIAEYRAILSSHEKLIELIIKELQEVKEAYG 542

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                 +RR+          +   + +I ++ I + +S+  +I+          +   V 
Sbjct: 543 D-----KRRSEI--RWDVMSSINNEDLIPQKEIVITLSSNNYIKRIDLEEYREQRRGGVG 595

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           +S +   + D ++  + A+T   +L+ + + K Y +    + SG    +   ++  +   
Sbjct: 596 VSTVKTYQDDDIQDVVVANTHADLLIFTDEAKIYRVRGHEIPSGTKQSKGTPIVNIVPTI 655

Query: 600 Q------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           Q       I+    Y+ +  L+ V+ +G        E     + GK  L +  ++ +  V
Sbjct: 656 QKNEKVVKIICVTDYEESQSLITVTERGVIKKTNLKEYELIRKNGKYALSLLEDDHLIDV 715

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             V   + + +   N ++  F++  + EM R  +GV      D      +     +G   
Sbjct: 716 RVVDQDEEIFIAASNSRINRFNVADVREMGRVARGVGGIRLSDDDKVVSVS-SSKDGAYI 774

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + Y +          KR   G +      ++GK + +
Sbjct: 775 FSLGAKGYGKLSLVESYRKTKRNAKGVITLNE-DKAGKLVYA 815



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMK 651
           I L+ +  +V+         +  + +KG   +          R  K  + ++ ++  K+ 
Sbjct: 754 IRLSDDDKVVSVSSSKDGAYIFSLGAKGYGKLSLVESYRKTKRNAKGVITLNEDKAGKLV 813

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
               V G + + ++ ++   +  S+  I  + R  KGV++ + K      V   KI +  
Sbjct: 814 YAAAVHGVEDLIIMTQSGIAIRISLRDINVIGRNAKGVKIINLKGRSDQIVGVAKIYDE- 872

Query: 710 TWIDSAGRSYNRSENDL 726
              D+  R   + E   
Sbjct: 873 ---DATDRELTKEEYIE 886


>gi|86150440|ref|ZP_01068665.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85839035|gb|EAQ56299.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6]
          Length = 863

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 246/786 (31%), Positives = 400/786 (50%), Gaps = 50/786 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES ++   V+
Sbjct: 247 AKTHI-EKKTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   + I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHV-- 661
             +D +  L   +  G       SE       G   + +   +++   + V    D +  
Sbjct: 605 TDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFA 664

Query: 662 ---------------------------------AVVGENRKLLIFSIDQIPEMSR-GKGV 687
                                              V +    + F + ++ E+ R  +GV
Sbjct: 665 TGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGV 724

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 725 TAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 784

Query: 747 SGKFLS 752
           +   +S
Sbjct: 785 TKDLIS 790


>gi|301633386|gb|ADK86940.1| DNA gyrase, A subunit [Mycoplasma pneumoniae FH]
          Length = 839

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 249/756 (32%), Positives = 387/756 (51%), Gaps = 28/756 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             L +  +K +SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++     G+   
Sbjct: 13  QELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHD 72

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F  RY LI G GNFG+IDGD  AA 
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++A  +L+ +D+D VDF   Y+ E+ EP V P+ FPNLLANG+SGIAVGM+T
Sbjct: 133 RYTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMST 192

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIPSHN+ E+ +  + LIDNP+ +I  LL  I GPDFPTG  I+ ++  I   +  G+G 
Sbjct: 193 SIPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTK-GIESYFETGKGN 251

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R++  +E++      +VVTEIPY V K+ LIEKI EL+ A+ I  + DIRDES+ + 
Sbjct: 252 VVIRSKVSIEQL-PTRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++L+  +F  + ++ RFP+NM  L     P+++ +   L  +L H+ 
Sbjct: 311 IRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVK-GAPKLLNMKQALTVYLEHQL 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           +VL R++ F ++    R  IL GLLIA LNIDE+IAII+           +  RF L E 
Sbjct: 370 DVLIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHERFGLDEI 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  A+L++RLRSL  LE  ++++E   L A  E    +L   + Q   I  ++ ++ E F
Sbjct: 430 QARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADKQLQLKLIKEQLTKINEQF 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RR+         +    + +I +E + + +S  G+++              V
Sbjct: 490 GDP-----RRSEIL--YGISEDIDDEDLITQENVVITMSTNGYLKRIGVDSYNLQHRGGV 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  L     DS+   L   T   +L  +  GK Y + A  +  G    +      LI +
Sbjct: 543 GVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPPGFRTNKGIPAVNLIKI 602

Query: 597 NHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           + ++ I      +          +  G       SE       GK  +     + +  V+
Sbjct: 603 DKDEKICALISVNDYQNGYFFFCTKNGTIKRTSLSEFANILSIGKRAILFKENDVLFSVI 662

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
           + +G D + +      ++ F  D +  +SR   GV   +   G   + +      G   +
Sbjct: 663 RTSGQDDIFIGSTAGFVVRFHEDTVRPLSRAAMGVLGINLNQGEFVNGLS-TSSNGSLLL 721

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                   +  +     L KR   G    +   ++G
Sbjct: 722 SVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTAKTG 757



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 7/186 (3%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S+   A+ FKE D L   +     D I + ST G         +         + L I+L
Sbjct: 644 SIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLSRAAMGV-LGINL 702

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKL 652
           N  + +       +   LL V   G   +    +     R  K    +     +   +  
Sbjct: 703 NQGEFVNGLSTSSNGSLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTAKTGPVVTT 762

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLT 710
                 + + ++    K++  S++Q+ E  +   GV+L   K+   +  V  FK  E + 
Sbjct: 763 TTVFGNEDLLMISSAGKIVRISLEQLSEQGKNTSGVKLIKLKEKERLETVTIFKKEEAIK 822

Query: 711 WIDSAG 716
              +  
Sbjct: 823 TTTATE 828


>gi|262200052|ref|YP_003271260.1| DNA gyrase subunit A [Gordonia bronchialis DSM 43247]
 gi|262083399|gb|ACY19367.1| DNA gyrase, A subunit [Gordonia bronchialis DSM 43247]
          Length = 827

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 229/777 (29%), Positives = 391/777 (50%), Gaps = 41/777 (5%)

Query: 6   ISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++         + V+ V L   +++ Y+ YA+S I  RA+P++RDG KPVHRR+++A 
Sbjct: 1   MTDTTLPPAGGEGDRVEPVDLGQEMQKSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYAS 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G     ++ KSA+ V E +G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+ 
Sbjct: 61  YDAGFRPDRSYVKSAKPVAETMGNYHPHGDTAIYDALVRLAQPWSMRYPLIDGQGNFGSR 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D AAA RYTEAR+T +A  +L+ +DE+ VDF   Y+ + +EP V P++ PNLL NG+ 
Sbjct: 121 GNDGAAAMRYTEARLTPLAMEMLRDIDEETVDFTPNYDGKTNEPTVLPARIPNLLINGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN++E+ +A +  +++P    E ++   +E I GPDFPT   ++   +
Sbjct: 181 GIAVGMATNIPPHNLREVADAVIWALEHPDADDETTLAACMEAIKGPDFPTAA-LIVGSQ 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y  GRG  R+R+   +EE   G+  +VVTE+PYQV    LI+ IAE +   ++  
Sbjct: 240 GIRDAYTTGRGSIRMRSVVDIEENK-GTTTLVVTELPYQVNPDNLIQSIAEQVNEGKLKG 298

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           +  I D+ S      ++    R     +++ +++  S ++T F  NM  +    VP+ + 
Sbjct: 299 ISRIEDQSSDRVGMRIVVTLRRDAVAKVVLNNLYKHSQLQTSFGANMLSIVD-GVPRTLR 357

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           LD +++ ++AH+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     +  
Sbjct: 358 LDQMIRYYVAHQIDVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEAA 417

Query: 417 MVSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                    + E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q  
Sbjct: 418 RTGLMDLLEIDEIQADAILAMQLRRLSALERQKIVDELAEIEREIADLQDILAKPERQRA 477

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            +  E++ V + +        RRT       AD     + +I +E + V I+  G+ +  
Sbjct: 478 IVRDELKVVVDKYGD-----DRRTKII---AADGDVTDEDLIAREDVVVTITETGYAKRT 529

Query: 534 KSH--------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
           K+            +     K+ D +K    + T D IL  +T G+ Y   A  L   + 
Sbjct: 530 KTDLYRSQRRGGKGVQGAGLKQDDIVKHFFVSSTHDWILFFTTKGRVYRAKAYELPEANR 589

Query: 584 RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+     + I        Y     L++ +  G     +  +  +N   G  
Sbjct: 590 TARGQHVANLLAFQPEERIAQVIQLKSYQDAPYLVLATRNGLVKKSKLEDFDSNRSGGIA 649

Query: 641 FLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG 696
            + +  E+++      +  D + +V +  + + F  D   +  M R   GV+   +    
Sbjct: 650 AINLRGEDELVGAQLCSADDDLLLVSQKGQSIRFHADDEALRPMGRQTSGVQGMRFNADD 709

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +   + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 710 TLLSLNV-VREGTYLLVATSGGYAKRTGMDDYPVQGRGGKGVLTIAHDRRRGELIGA 765



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 75/205 (36%), Gaps = 12/205 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
            +  P  V+ +  G ++  K    D +        + +  D L  A      D +LL+S 
Sbjct: 617 YQDAPYLVLATRNGLVKKSKLEDFDSNRSGGIAAINLRGEDELVGAQLCSADDDLLLVSQ 676

Query: 569 DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            G++    A +      G   +    +  N +  +++  V      LLV +S G A    
Sbjct: 677 KGQSIRFHADDEALRPMGRQTSGVQGMRFNADDTLLSLNVVREGTYLLVATSGGYAKRTG 736

Query: 628 ESEIIANTRKGKTFLKVSSE---EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
             +     R GK  L ++ +    ++   + V  D  +  +     ++  +  Q+ +  R
Sbjct: 737 MDDYPVQGRGGKGVLTIAHDRRRGELIGALIVDDDSELYAITSGGGVIRTAAKQVRKAGR 796

Query: 684 -GKGVRLQSYKDGGISDVICFKICE 707
             KGVRL +  +G     I     E
Sbjct: 797 QTKGVRLMNIDEGTTVIAIARNADE 821


>gi|254393573|ref|ZP_05008706.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|294813746|ref|ZP_06772389.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|326442167|ref|ZP_08216901.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|197707193|gb|EDY53005.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|294326345|gb|EFG07988.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
          Length = 873

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 240/778 (30%), Positives = 392/778 (50%), Gaps = 45/778 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                +  ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 12  EEEQPQMRIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRP 71

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA
Sbjct: 72  EKGFYKCARVVGDVMGTYHPHGDTSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  ++  +L+ +DED VDF+D Y+  + EP V P++ PNLL NG++GIAVGMA
Sbjct: 132 MRYTECKMAPLSMEMLRDIDEDTVDFQDNYDGRNQEPTVLPARIPNLLVNGSAGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYR 244
           T+IP HN++E+   A   +++PE S E+    L+E I GPDFPTG  +V  R+ I E+YR
Sbjct: 192 TNIPPHNLREVAAGAQWALEHPESSHEELLDALIERIKGPDFPTGA-LVVGRKGIEEAYR 250

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   RI  + D+RDE
Sbjct: 251 TGRGSITMRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGRIGGIADVRDE 309

Query: 305 -SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            S+   + ++    R     +++ +++  +D++T F  NM  L    VP+ + LD  ++ 
Sbjct: 310 TSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GVPRTLSLDAFIRH 368

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           W+ H+ EV+ RR+ FR++  + R  IL+GLL A  +IDE+IA+IR  D  +         
Sbjct: 369 WVTHQIEVVVRRTRFRLRKAEERAHILRGLLKALDSIDEVIALIRRSDTVEIARAGLMDL 428

Query: 423 --LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q +AIL ++LR L  LE  +I  E   L  +  + +++L S ++Q   ++ E+ 
Sbjct: 429 LSIDEVQANAILEMQLRRLAALERQKILQEHAELQEKINEYNAILASPEKQRRIVSEELA 488

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
            + E +        RR+              + +I +E I V IS  G+++         
Sbjct: 489 VIVEKYGD-----DRRSQLVPFDGDMS---IEDLIAEEDIVVTISRGGYVKRTRTDDYRS 540

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI 590
            K     +     KE D +     + T   +L  +  G+ Y   A  L        G+ +
Sbjct: 541 QKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHV 600

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+    ++ I        Y++   L++ +  G        +  +    G   + +   
Sbjct: 601 ANLLAFQPDERIAQILAVRDYEAAPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLRET 660

Query: 648 --------EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
                   +++     V+  D + ++ +  + + F+     +  M R   GV+  S+++G
Sbjct: 661 DNGAEGTADELIGAELVSAADDLLLISKKAQSIRFTATDEALRPMGRATSGVKGMSFREG 720

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +   +  G     +    Y +        +  RGG+G    K     G  + +
Sbjct: 721 DELLSMNV-VRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 777


>gi|157803418|ref|YP_001491967.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel]
 gi|157784681|gb|ABV73182.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel]
          Length = 894

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 240/825 (29%), Positives = 382/825 (46%), Gaps = 88/825 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
             N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++
Sbjct: 6   SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYR 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RM +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP 
Sbjct: 126 SRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R
Sbjct: 186 HNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   + 
Sbjct: 245 GRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIF 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + ++ ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+ 
Sbjct: 305 IELKKDVEAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVIT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------ 415
            R+ + +     +  IL GL IA  NIDEII II+  + P                    
Sbjct: 364 NRTVYLLNKARDKAHILLGLTIAVSNIDEIIRIIKASNDPNTAKQEVMARKWNALNILPL 423

Query: 416 ----------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                         + S TE Q  A+L +RL+ L  +E+ +++ +L  L  E  +  ++L
Sbjct: 424 VKLVDDKAMLNEHGKCSFTEVQAKAVLEMRLQRLTAMEKNKLEEDLKTLATEISEYLNIL 483

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S ++    +  E+ +VKE F+           F +         +  +       +   
Sbjct: 484 GSRERLLKILKEELIKVKEEFATPRLTSIEFGEFDKDIEDLIQREEMVVTVTLGGYIKRV 543

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                RS K      S L  ++ D         T   +L  S  GK Y+L    L     
Sbjct: 544 PLSSYRSQKRGGKGRSGLSMRDEDMTTQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNP 603

Query: 586 HGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRK 637
            G+   +  ++ L  N+ I                 ++  ++KGN    +  +       
Sbjct: 604 QGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSN 663

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSYKD 694
           GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   GVR      
Sbjct: 664 GKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAG 723

Query: 695 GGISDVI-------------------------------CFKICE---------------- 707
                 +                                F   E                
Sbjct: 724 DDSVISMTVLKGISSTKEDRDAYLSVSWEQRLEIAKGKSFNPEELGVSLTLDSILEMANS 783

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      + +  +     +  RGG G +      ++G  + 
Sbjct: 784 EEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           + +S   +L V+  G              R G   + +   +K   +  V+ V   D + 
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           ++  N KL+   ++ +    R   GV L    DG     +        +
Sbjct: 840 LITNNGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIADTSAS 888



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 53/225 (23%), Gaps = 53/225 (23%)

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI-- 631
            +   +LL  +      ++ I L+ +  ++          +L+ +  G A       +  
Sbjct: 648 NIRRSDLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRV 707

Query: 632 -IANTRKGKTFLKVSSEEKMKLVVKVTG-------------------------------- 658
             + T  G   +K++ ++ +  +  + G                                
Sbjct: 708 IKSRTSDGVRGMKLAGDDSVISMTVLKGISSTKEDRDAYLSVSWEQRLEIAKGKSFNPEE 767

Query: 659 -----------------DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDV 700
                            + +  V EN      S        RG  G+      D     V
Sbjct: 768 LGVSLTLDSILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVV 827

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
               +      +                 +  R   G ++ K   
Sbjct: 828 GVMPVKMDDELMLITNNGKLIRCKLESVRITGRNTSGVILFKLDD 872



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 46/150 (30%), Gaps = 3/150 (2%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
             +  E     + +S    +   K  S +   L         I   A++ + IL ++ +G
Sbjct: 736 ISSTKEDRDAYLSVSWEQRLEIAKGKSFNPEELGVSLTLDS-ILEMANSEEFILTVTENG 794

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A         G  I  +   +    +V         +L+++++ G     +   
Sbjct: 795 FGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELMLITNNGKLIRCKLES 854

Query: 631 --IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
             I      G    K+   EK+  V  +  
Sbjct: 855 VRITGRNTSGVILFKLDDGEKVVSVSLIAD 884


>gi|119487597|ref|ZP_01621207.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106]
 gi|119455766|gb|EAW36902.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106]
          Length = 884

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 243/797 (30%), Positives = 380/797 (47%), Gaps = 59/797 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ EE +    LR  +++ YL YA+S I  RA+PD RDGFKPVHRRI++AM E+GL    
Sbjct: 2   SISEERIVPRDLREEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMHELGLMPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI+G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDGAVYDALVRMAQHFSMRSPLIAGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +  + +L+ +D + V+F D ++    EP+V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLESLTSDAMLRDIDAETVNFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +A+I NPEI+  +L++YI GPDFPTG  I+  R  I E+Y  G+G 
Sbjct: 182 NIPPHNLGELVDGLVAMIYNPEITDLELMQYIPGPDFPTGAKIL-GRSGIREAYTTGQGS 240

Query: 250 FRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I++T++PYQ  K+ LIEKIAE++  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETLQQRGRPEREAIIITQLPYQTNKAALIEKIAEMVNDKRIEGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R   P +++ +++  + +++ F  NM  L   R P+ + L   LK +L
Sbjct: 301 DRQGMRIVVELRRDAYPRVVLNNLYKQTPLQSNFGANMLALVNSR-PERLTLSRYLKVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
             R E + RR+ + ++    R  +L+GLLIA  N+D II++IR+             RF 
Sbjct: 360 EFRVETIRRRTEYELRKAQERDHLLQGLLIALDNLDPIISLIRHAADTPTAKQELIERFE 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE ++I++E + L      +  +L   ++  + I  E  E+
Sbjct: 420 LSEVQADAILQMQLRRLTALEAHKIQAEHEELQNIIADLQDILARRERILDIIESEAIEL 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE            T          A  +  ++  E   +         +    +   S 
Sbjct: 480 KERHGSPRRTEIEHTEGELEDTDLIANEKAIILVTEQGYIKRMPVNTFDAQNRATRGKSG 539

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
              KE D +   L     D IL  S  G  Y L A  +   S    G  I  ++ +   +
Sbjct: 540 AKMKEDDGIDHFLSCCDHDSILFFSDRGVVYCLKAYQIPVASRTARGVPIVQMLPIPKQE 599

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I +      +     L++++  G     E S        G   + +   ++++ V    
Sbjct: 600 RITSVVPVSEFSDDEYLVMLTKGGYIKKTELSAFSNIRANGLIAISLGEGDELRWVRLAK 659

Query: 658 GDH-VAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKI-------- 705
            D  + +       + F  D  Q+  + R  +GV+      G   ++I   I        
Sbjct: 660 ADDSIIIGSRLGMAIHFRTDHKQLRPLGRATRGVKSMKL--GKKDELISMDILPSAIVSS 717

Query: 706 ----------------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
                                        + L  +      Y +        L  R G G
Sbjct: 718 IAQLESEETDIEDEEVLETETEETTVENNQELAIMVITAGGYGKRVPVSQFRLQNRAGKG 777

Query: 738 SLVPKGFP--RSGKFLS 752
            +  K      + + + 
Sbjct: 778 IIATKFKQHLTTDEVVG 794



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVVKVTGD-HVA 662
           +    ++V+++ G    V  S+     R GK  +        + +++  +  V  D  + 
Sbjct: 746 NQELAIMVITAGGYGKRVPVSQFRLQNRAGKGIIATKFKQHLTTDEVVGLQVVNEDNELM 805

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++     ++  +++ IP  SR   GVR+Q   D      +     
Sbjct: 806 LITSRGIIIRQAVNAIPTQSRSATGVRVQRLDDEDAIAAVAIVPP 850


>gi|153951683|ref|YP_001397894.1| DNA gyrase subunit A [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939129|gb|ABS43870.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. doylei 269.97]
          Length = 862

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 247/786 (31%), Positives = 402/786 (51%), Gaps = 50/786 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN ++S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDVSLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHI-EKKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +A
Sbjct: 365 RRTIFELQKARVRAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   + I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHV-- 661
             +D +  L   +  G       SE       G   + ++  +++   + V    D +  
Sbjct: 605 TDFDESKSLCFFTKNGIVKRTNLSEYQNIRSIGVRAINLNENDELVTAIIVQRDEDEIFA 664

Query: 662 ---------------------------------AVVGENRKLLIFSIDQIPEMSR-GKGV 687
                                              V +    + F + ++ E+ R  +GV
Sbjct: 665 SGGEENLENQEIENLDDENLENEESASTQGKMLFAVTKKGMCIKFPLVKVREIGRVSRGV 724

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 725 TAIKFKEKNDELVGAVVIENDEQEILSVSAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 784

Query: 747 SGKFLS 752
           +   +S
Sbjct: 785 TKDLIS 790


>gi|296127173|ref|YP_003634425.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563]
 gi|296018989|gb|ADG72226.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563]
          Length = 834

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 243/765 (31%), Positives = 408/765 (53%), Gaps = 28/765 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S     + + V  +S+   L E YL YA+S I  RA+PD+RDG KPVHRRI++AM +  L
Sbjct: 17  STLTKDILKRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANL 76

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                +KKSA  VGEV+ + HPHGD +VY ++VR+AQ F  RY L+ GQGNFG+ID D  
Sbjct: 77  THDKPYKKSAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPP 136

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEARMT+ AE +L  ++++ V F   +++  +EP V P+  P LL NG+ GIA+G
Sbjct: 137 AAMRYTEARMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIG 196

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++P+HN++E+  A +  ID+ +  I+ L+ YI GPDFPT G I+  +E I E+Y  G
Sbjct: 197 MATNMPTHNLREVVNAVVYYIDHQDAEIKDLMRYIQGPDFPTAG-IIYGKEGIKEAYTTG 255

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +G  ++RAR  +EE  +    IVV E+PY V K+ L EKIAEL+   +I  + DIRDES+
Sbjct: 256 KGRIKLRARLEIEETKKDREAIVVKELPYGVVKTTLHEKIAELVKQGKIEGVADIRDESS 315

Query: 307 EDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    + +   +++  +F  +D+ET F +    L     P+V+ L  ++K ++
Sbjct: 316 NRAGIRLIIELKKGVATQIVLNQLFKHTDLETTFGIINLALV-NGEPKVLNLKELIKYFV 374

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR EV+ +R+ + +     +  IL+GLLIA  NI+E+I IIR  +     +  +++RF 
Sbjct: 375 DHRVEVITKRTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNRFK 434

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++ L+ L  LE+ +I+ EL  L       + LL   ++    I  E++++
Sbjct: 435 LSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLAHPEKILAVIKDELKKI 494

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--- 539
            E +        RR+     +       ++ +I  E + V I+ +G+I+ + + S     
Sbjct: 495 AEKYGD-----DRRSEIIGKTND-TEIDEEDLIHDEDVAVSITTQGFIKRVPASSYRTQG 548

Query: 540 -----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +     +    ++    A T D + + +  GKA+ +    +   +    G++I+ 
Sbjct: 549 RGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALTKISQGKSIKF 608

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +++L   + I + F    +D    +++V+  G    +E   +    ++G   L + + ++
Sbjct: 609 ILNLAPEEKITSYFTVSEFDPKQSIIMVTKMGTIKKMELKHLENAKKRGILALTLENNDE 668

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  V +GD   +       L  + ++I +M R   GV+  +  D  I  V    I +
Sbjct: 669 LVAVSAVQSGDDFIMTTATGLALRITEEKIRKMGRAAAGVKGIALDDDDI-CVSGNAIHK 727

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           G + I        +  +     +  RGG G +  K   ++GK +S
Sbjct: 728 GESLIVITENGIGKRLSSKQFNVKGRGGKGQIYIKPDNKTGKVVS 772



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 64/182 (35%), Gaps = 6/182 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
            +    + AL  +  D L       + D  ++ +  G A  +    +        A    
Sbjct: 652 NAKKRGILALTLENNDELVAVSAVQSGDDFIMTTATGLALRITEEKIRKMGRAA-AGVKG 710

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L+ +   V+         L+V++  G    +   +     R GK  + +  + K   +
Sbjct: 711 IALDDDDICVSGNAIHKGESLIVITENGIGKRLSSKQFNVKGRGGKGQIYIKPDNKTGKV 770

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V  V   D + VV  +   +    D IPE+ R  KGV++ +  DG     +    C+ 
Sbjct: 771 VSVKTVGDKDEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGARVSDLAVVPCDN 830

Query: 709 LT 710
             
Sbjct: 831 EE 832


>gi|313891414|ref|ZP_07825030.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E]
 gi|313120189|gb|EFR43365.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E]
          Length = 812

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 250/755 (33%), Positives = 394/755 (52%), Gaps = 20/755 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  + +  L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     F+
Sbjct: 5   EGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD +VY+S VR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 65  KSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM +++  +L+ +D+D VDF   Y+    EPVV PS+ PNLL NG+ GIAVGMAT+IPS
Sbjct: 125 MRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIPS 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +   A+IDNPEI++++L+ Y+ GPDFPTG  I+  ++ I ++YR GRG  +VR
Sbjct: 185 HNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGA-IIMGKKGIQDTYRTGRGSIKVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE+  G   IVVTEIPYQV K+RL+E IAEL   K I  +  +RDES  +   ++
Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                 ++P +++ ++F  + +E  F   M  L     P+V+ L  ++  +L H+ EV+ 
Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVD-GHPRVLSLKQMMYYYLKHQEEVIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RRS + +     +  IL+GLLIA  +IDE+I  IR            +S+F L+E Q  A
Sbjct: 363 RRSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSKFELSEKQSVA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RLR L  LE  +I+S+  +++     ++ LL+   +    +  E+ E+KE F    
Sbjct: 423 ILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLLSDRNKIMKVVKDELIEIKEKFGDER 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                ++T               +   +   +       IR  +     +S +  K+ D 
Sbjct: 483 RTQFEKSTEGFDLTDLVPDEPMTITVTKHNYIKRMESSDIRIQRKGGRGVSGMKMKDDDY 542

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA---IQLLIDLNHNQDIVTAFV 607
           +   ++  T +R+L  + +GK Y                   I  +  L  ++ +     
Sbjct: 543 VWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSRTARGSALINFIPTLEKDERVTEMLD 602

Query: 608 YDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
            D +      LL+++  G        E     + G   L+++  +++  V+ V GD  V 
Sbjct: 603 PDMSNEGVKYLLMITRYGYVKKTLIEEYKHINKNGIIALRLNEGDRLVKVIPVVGDEDVI 662

Query: 663 VVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           +       + FSI  D+I  + R   GV       G   +V+   I +       +    
Sbjct: 663 LGTRKGMAIRFSIADDEIRSVGRVAAGVHGIKLSAGD--EVVGAVIADEKDIFTISADGN 720

Query: 720 NRSENDLLGWLGKRGGVGSLVPK-GFPRSGKFLSS 753
            +   +    +  R G G    K GF      +++
Sbjct: 721 AKRNKESAYHVQGRNGKGVRNFKRGFE-VVALVAA 754



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 4/132 (3%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A + +   G   A    I L+   ++V A + D    +  +S+ GNA   +ES      R
Sbjct: 676 ADDEIRSVGRVAAGVHGIKLSAGDEVVGAVIADE-KDIFTISADGNAKRNKESAYHVQGR 734

Query: 637 KGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM--SRGKGVRLQSYK 693
            GK         E + LV     D +  V E    +  S  QI       G+GV LQ  +
Sbjct: 735 NGKGVRNFKRGFEVVALVAADDNDELVGVSEGGITIKTSASQISSKKAKAGQGVILQRLE 794

Query: 694 DGGISDVICFKI 705
           +G     I    
Sbjct: 795 EGDRIASIDVVP 806


>gi|260435945|ref|ZP_05789915.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109]
 gi|260413819|gb|EEX07115.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109]
          Length = 874

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 235/783 (30%), Positives = 392/783 (50%), Gaps = 53/783 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMSMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+I
Sbjct: 135 ESRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +   ALI NPEI+ ++L++ I GPDFPTGG I+  RE I E+Y  GRG   
Sbjct: 195 PPHNLNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQIL-GREGIRETYLGGRGSVT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  
Sbjct: 254 MRGVANIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F   M  L     P ++ L  +L+ +L  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALV-NGEPILLTLRKMLEVFLDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLT 424
           R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L+
Sbjct: 373 RVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHGLS 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ +++E
Sbjct: 433 DIQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQSELGQLQE 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SH 536
            +       RRRT   ++           +I  E   V+++  G+++ +           
Sbjct: 493 RYPT-----RRRTEILDLGGGLSDI---DLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
           +   +    +  D++K+ +  +  D ++L S  G +Y LPA  +       +   +  L+
Sbjct: 545 TRGKAGTRSQGEDAVKLFISCNDHDTLVLFSDRGVSYALPAYRVPQCSRAAKGTPVVQLL 604

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I T      +     L++++  G       S        G   + +   + + 
Sbjct: 605 PIPREEAITTLIPVSEFSDDTDLVMLTRGGFIKRTRLSAFSNIRSNGLIAINLEEGDALT 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKI-- 705
            V   V GD V +  +    + F +    +  + R  +GVR  + +DG     +      
Sbjct: 665 WVRLAVPGDSVLIGSKAGMTIHFRLSDEELRPLGRTARGVRSMNLRDGDALVSMDVLPVE 724

Query: 706 ----------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                            EG   + ++     +        L KR G+G    K    + +
Sbjct: 725 LADQVAASAEDEEDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDTDE 784

Query: 750 FLS 752
            + 
Sbjct: 785 LVG 787



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLV-VKVTGDHVAVVG 665
               +LV S+ G    V  ++     R G     +K  ++ +++  + V   G+ + +V 
Sbjct: 742 EGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDTDELVGLSVLGAGEELLLVS 801

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           E   ++  S D IP+ SR   GVRLQ    G     +     E   
Sbjct: 802 EKGVIVRTSADAIPQQSRAATGVRLQKLDKGDRLLKVVLVPPEAED 847


>gi|148926065|ref|ZP_01809751.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845544|gb|EDK22636.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 862

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 246/786 (31%), Positives = 400/786 (50%), Gaps = 50/786 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ + S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHI-EKKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   + I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHV-- 661
             +D +  L   +  G       SE       G   + +   +++   + V    D +  
Sbjct: 605 TDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFA 664

Query: 662 ---------------------------------AVVGENRKLLIFSIDQIPEMSR-GKGV 687
                                              V +    + F + ++ E+ R  +GV
Sbjct: 665 TGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGV 724

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 725 TAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 784

Query: 747 SGKFLS 752
           +   +S
Sbjct: 785 TKDLIS 790


>gi|239980781|ref|ZP_04703305.1| DNA gyrase subunit A [Streptomyces albus J1074]
 gi|291452639|ref|ZP_06592029.1| subunit A [Streptomyces albus J1074]
 gi|291355588|gb|EFE82490.1| subunit A [Streptomyces albus J1074]
          Length = 875

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 244/791 (30%), Positives = 404/791 (51%), Gaps = 50/791 (6%)

Query: 1   MGVDNISNSNTLVEE--------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKP 52
           M  +N  ++  +  +         V+ V L   ++  YL YA+S I  RA+PD+RDG KP
Sbjct: 1   MADENNPSTPEIEIDAEGLPLAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKP 60

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+
Sbjct: 61  VHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLV 120

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GNFG+   D AAA RYTE +M  ++  +++ +DE+ VDF D Y+    EP V P++F
Sbjct: 121 DSNGNFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSKEPSVLPARF 180

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPT 228
           PNLL NG++GIAVGMAT+IP HN++E+   A   ++NPE      ++ L+E I GPDFPT
Sbjct: 181 PNLLINGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEADPDTLLDALIERIKGPDFPT 240

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G  +V  R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQV    L +KIA+
Sbjct: 241 GA-LVVGRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIAD 298

Query: 289 LIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           L+   RI  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L 
Sbjct: 299 LVKDARIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALV 358

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
              VP+ + LD  ++ W+AH+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+I
Sbjct: 359 D-GVPRTLSLDAFIRHWVAHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALI 417

Query: 408 RNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
           R            +    + E Q +AIL ++LR L  LE  +I +E D+L A+ ++ +++
Sbjct: 418 RASQTVDVARGGLMELLEIDEIQANAILEMQLRRLAALERQKIVAEHDDLQAKIDEYNAI 477

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L S ++Q   I+ E+  + + F +      RR+              + +I +E I V I
Sbjct: 478 LASPERQRQIISEELAAIVDKFGE-----DRRSALVPFDGDMS---IEDLIAEEDIVVTI 529

Query: 525 SNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           +  G+++  K+            +     KE D +     + T   +L  +  G+ Y   
Sbjct: 530 TRGGYVKRTKTDDYRSQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAK 589

Query: 577 AGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI 631
           A  L        G+ +  L+    ++ I        YD+   L++ +  G        + 
Sbjct: 590 AYELPDVGRDARGQHVANLLAFQPDESIAQILAIRDYDAAPYLVLGTKGGLVKKTPLKDY 649

Query: 632 IANTRKGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR 683
            +    G   + +       ++++     V+  D + ++ +  + + F+     +  M R
Sbjct: 650 DSPRSGGVIAINLRETPDGSDDELIGAELVSADDDLLLISKKAQSIRFTATDESLRPMGR 709

Query: 684 G-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GV+  S+++G     +   +  G     +    Y +        +  RGG+G    K
Sbjct: 710 ATSGVKGMSFREGDELLSMNV-VRPGTFVFTATDGGYAKRTGVDEYRVQGRGGLGIKAAK 768

Query: 743 GFPRSGKFLSS 753
                G+ + +
Sbjct: 769 IVEDRGELVGA 779


>gi|307297530|ref|ZP_07577336.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916790|gb|EFN47172.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 808

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 234/755 (30%), Positives = 381/755 (50%), Gaps = 16/755 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +   ++   L   Y+ Y++S I  RAIPDLRDG KPV RRI+  MSE+GL     F
Sbjct: 1   MPEEIIHKNIDDELINSYMLYSMSVIVGRAIPDLRDGLKPVQRRILFGMSELGLHHNQGF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD ++YD+LVR+AQPF  RYPL+ GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKFHPHGDAAIYDALVRMAQPFSMRYPLVEGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM  +AE +LQ +D++ V     ++   SEP V P+K PNLL NGTSGIAVGM TSIP
Sbjct: 121 EARMETLAEELLQDIDKNTVPMMPNFDGSLSEPDVLPTKIPNLLLNGTSGIAVGMMTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI +A   LI +PE S+  LL +I GPDFPTGG+I     SI   Y+ G+G   V
Sbjct: 181 PHNLVEIIDAISLLIKDPECSVSDLLRHIKGPDFPTGGMI-MDAASIPSIYQEGKGRITV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA   +EE G GS  IVV+EIPY   K+ +IE+I       R   + +IRDES +    V
Sbjct: 240 RAIAEIEESG-GSSQIVVSEIPYNTSKADIIEQIVNATQNHRDLQIRNIRDESDQKGLRV 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP++++  +F  + ++T F +NM V+   + P+VM L  IL+ +L+HR  V+
Sbjct: 299 VIELKRGADPNVVLNLLFKHTQLQTTFSVNMLVIDEKKRPRVMNLKQILQGFLSHRFNVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             ++ + ++   +R  I++GL     +   + +II    N ++    ++    +T+ Q  
Sbjct: 359 RSKTEYDLEQASKRAHIVEGLTKATRSIDTVVDIIRNSANSEEASKNLMETLEVTQEQSS 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++R+  L  +E  ++ +E  +L+A+  +   +L S ++ +  I  E+ E+K  +  +
Sbjct: 419 AILDMRMGKLTGMEIEKLLNEYKDLVAKINEYRMILASDEKVYGIILDELNEIKAKYGDA 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-SVDLSALHFKEG 548
                      + +  D    +  ++       + S        +      +  +   + 
Sbjct: 479 RRTRIDLGNGTDFNIEDVIPDEDIVLMVTKKGYIKSTPLESYRKQGRGGKGVIGVRTGDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTL--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D +   L      + +++++ GKAY L     +  S    G+ +   I ++ ++++    
Sbjct: 539 DFVVNILTTTRLSKTVIITSKGKAYVLSNHIIDHSSRDSKGKLLANYIKIDPDENVQAVL 598

Query: 607 VYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660
                     +L++ +  G     E    +     G   + ++  +++          D 
Sbjct: 599 STRKEEVQGKQLVITTRSGKIKKTEFEAFLNVRISGIKAISLNEGDRVIDASLTSREDDT 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRS 718
           + +  +N  ++ F +DQ+  M R   GV     K    +         +    + +  + 
Sbjct: 659 IIISTKNGMVIRFPLDQVRSMGRSAAGVMGIRLKKNDEVVGANIVASEDTRFLLTATEKG 718

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +           RGG+G     G  + GK + +
Sbjct: 719 GGKRTCLSEYRSQNRGGLGVKNIYGLEKIGKVIGT 753



 Score = 95.2 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKLLV 616
             D I++ + +G     P  + +   G   A  + I L  N ++V A +   + T  LL 
Sbjct: 655 EDDTIIISTKNGMVIRFP-LDQVRSMGRSAAGVMGIRLKKNDEVVGANIVASEDTRFLLT 713

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLI 672
            + KG       SE  +  R G     +   EK+  V+      + D V +  +    + 
Sbjct: 714 ATEKGGGKRTCLSEYRSQNRGGLGVKNIYGLEKIGKVIGTLVVNSDDEVILATKLGMSIR 773

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + Q+    R  KGVR+   KD  I+  +   + 
Sbjct: 774 IPVSQVRPTGRVTKGVRIVDLKDNDIAASMAVVVD 808


>gi|15643842|ref|NP_228890.1| DNA gyrase, subunit A [Thermotoga maritima MSB8]
 gi|6831558|sp|O33926|GYRA_THEMA RecName: Full=DNA gyrase subunit A; AltName: Full=Topoisomerase II
           subunit A
 gi|4981629|gb|AAD36161.1|AE001768_10 DNA gyrase, subunit A [Thermotoga maritima MSB8]
          Length = 804

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 230/751 (30%), Positives = 379/751 (50%), Gaps = 13/751 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +    +   L E YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  
Sbjct: 1   MPEILINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD  VYD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++AE +L+ ++++ V+  D ++    EP V PSK PNL+ NG SGIAVGMAT+IP
Sbjct: 121 EARLTRLAEEMLEDIEKNTVNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A + LID+PE ++E+L+++I GPDFPTG  +V +   + + Y  GRG   V
Sbjct: 181 PHNLSETVDALIYLIDHPEATVEELMQFIKGPDFPTGA-VVVNASELKKVYEEGRGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  VE+  R    IV+TEIPY V K+ LIE+IA++        + +IRDES +    +
Sbjct: 240 RGKVHVEDGKR-VKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  + ++++ +++  + ++  F + M V+   + P++M L G+++ +L HR EV+
Sbjct: 299 VIEIPKDANEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ +  +   RR  +++GLL A   I  ++ I+RN       +  ++    +TE Q  
Sbjct: 359 RRRARYEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLMETLEITEEQAK 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE   +++E  +L+ +  ++  +L   ++    +  E   +K+ +   
Sbjct: 419 AILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKKEFLYLKQQYGDP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +               +       +  +     RS K     ++     E D
Sbjct: 479 RRTEVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLNSYRSQKRGGKGITVSKLSEDD 538

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            ++  + A  T   L ++  G+AY L             G  I   ++L   + IV    
Sbjct: 539 EVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALAS 598

Query: 608 YD-STCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH--VAV 663
            +     L++ +  G        E    T   G   +K+   +++     V  +   + V
Sbjct: 599 LNGEGRDLVIATKSGKIKRTALKEFENATSNRGVRAIKIEPGDEIVSARVVNSEKETLIV 658

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNR 721
             +    + F +  +  M R   GV+    + G  +  V      E    +    + + +
Sbjct: 659 ATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGEEGEILTVTEKGFGK 718

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                L  + +RGG G        ++G  ++
Sbjct: 719 RTPVQLYRIQRRGGTGLRNISDVNKTGYVVA 749



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 8/154 (5%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA--FVYDSTCKLLV 616
             + +++ +  G A   P  ++     +  A    I L    ++V+          ++L 
Sbjct: 652 EKETLIVATKMGMAIRFPVSDVRRMGRNA-AGVQAIKLQPGDEVVSVDVIPPGEEGEILT 710

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLI 672
           V+ KG              R G     +S   K   +  V  V GD  + VV  N  ++ 
Sbjct: 711 VTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVAVRYVRGDEEIVVVTRNGMMIR 770

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           F + +I  + R  KGV+L    D  IS V   K 
Sbjct: 771 FPVSEIGVIGRVTKGVKLIELGDDTISKVAVVKD 804


>gi|170077448|ref|YP_001734086.1| DNA gyrase subunit A [Synechococcus sp. PCC 7002]
 gi|169885117|gb|ACA98830.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7002]
          Length = 841

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 243/778 (31%), Positives = 385/778 (49%), Gaps = 61/778 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK
Sbjct: 1   MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD +VYD+LVR+AQ F  R PLI+G GNFG+ID D AAA RYTE R+  +A   +L
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPAAAMRYTECRLQSLATNALL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + ++ + VDF D ++    EPVV PS+ P LL NG+SGIAVGMAT+IP HN+ EI +   
Sbjct: 121 RDIESETVDFADNFDGSQQEPVVLPSRIPQLLVNGSSGIAVGMATNIPPHNLGEIIDGVT 180

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           ALI NPEI+I++L+++I  PDFPTG  I+  R  I ++Y  GRG   +R    +E + + 
Sbjct: 181 ALIHNPEITIKELMQFIPAPDFPTGAQIL-GRSGIKDAYMTGRGSITMRGVAEIETLRQN 239

Query: 265 ---SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
                 I+VT++PYQ  K+ LIE+IA+++  K+I  + DIRDES      ++    R   
Sbjct: 240 GREKEAIIVTQLPYQTNKAALIERIADMVNDKKIDGISDIRDESDRQGMRIVIELKRDAY 299

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P +++ +++  + ++  F  NM  L     PQ++ L   L+ +L  R EV+ RR+ + ++
Sbjct: 300 PRVVLNNLYKHTPLQANFGANMLALV-NGEPQLLNLKQFLQVFLDFRVEVITRRTRYELR 358

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRS 438
               R  IL+GLLIA  N+D +I +IR        +  ++  ++L++ Q DAIL ++LR 
Sbjct: 359 KAQERDHILQGLLIALDNLDAVIHLIRQAADTAIARQGLMDGYNLSQAQADAILQMQLRR 418

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE  +I++E  +LL +   ++ +L   ++ +  I  E+ E+K I         RRT 
Sbjct: 419 LTALEADKIEAEHQDLLLKITDLEDILARRERVYAIIEAELTEIKTIH-----QSDRRT- 472

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL--------HFKEGDS 550
             E+   D       +I  E   ++++ +G+I+ +   + D              KE D 
Sbjct: 473 --ELVLDDGDLQDIDLIANEQAAILLTEQGYIKRMPVATFDAQNRATRGKAATKMKEDDG 530

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV- 607
           +   L     D +L  +  G  Y+L A  +              L+ +  ++ I      
Sbjct: 531 VDHFLTCCDHDHVLFFTERGVVYSLSAYQIPQSSRTARGLPAIQLLPIPKDEKITAMLAV 590

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVV 664
             +     L++++  G       S        G   + +   ++++ V      D + V 
Sbjct: 591 SEFTEDEYLVMLTQNGYIKKTALSAFAKIRSNGLIAISLEDGDELRWVRLARQEDSIIVA 650

Query: 665 GENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISDV--------------------- 700
                 + F  D  Q+  + R  +GVR    K      V                     
Sbjct: 651 SSEGMAIHFQADHNQLRPLGRSTRGVRAMKLKSDDDKLVSMDIVSSQITAAIAAADTAED 710

Query: 701 ------ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 +   + +G   I    + + +        L  R GVG    K   ++ +  S
Sbjct: 711 EDDNEEVTENVDQGPWVIAVTTKGFGKRVPVGRFRLQNRAGVGLRAIKFKSKADRLAS 768



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 9/117 (7%)

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLVVKVT-GDHVAV 663
            D    ++ V++KG    V         R G     +K  S+ +++  +  V   D + +
Sbjct: 721 VDQGPWVIAVTTKGFGKRVPVGRFRLQNRAGVGLRAIKFKSKADRLASLRIVNPEDELML 780

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC----EGLTWIDSA 715
           V     ++  +++ I   SR   GVR+Q          +         +GL  +D  
Sbjct: 781 VTGRGIMIRQAVESISLQSRSATGVRVQRLDGDDAIVAVALVPPPAEEDGLETVDMT 837


>gi|87200806|ref|YP_498063.1| DNA topoisomerase IV subunit A [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136487|gb|ABD27229.1| DNA topoisomerase IV subunit A [Novosphingobium aromaticivorans DSM
           12444]
          Length = 761

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 382/762 (50%), Positives = 520/762 (68%), Gaps = 18/762 (2%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++   T  +  + +       AL ERYL YALSTI  R++PDLRDG KPVHRR++ AM +
Sbjct: 1   MATDTTEPDPFDAIVDAPFDSALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRQ 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + LD   AFKKSAR+VG+VIGK HPHGD SVYD++VRLAQ +  RYPL+ GQGNFGNIDG
Sbjct: 61  LKLDPAQAFKKSARVVGDVIGKYHPHGDASVYDAMVRLAQDWALRYPLVEGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAAYRYTEAR+T+ A  ++ G+DE  VDF  TYN E+ EP +FP  FPNLLANG+SGI
Sbjct: 121 DNAAAYRYTEARLTKTAIQLMSGLDEGTVDFVPTYNGEEEEPEIFPGLFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IPSHNV EI +A L LIDNP     +L+E   GPD PTGG+IV+S   I  +Y
Sbjct: 181 AVGMATNIPSHNVAEIIDATLLLIDNPHAEHAQLMEVFHGPDLPTGGVIVDSPAVISNAY 240

Query: 244 RLGRGGFRVRARWC-------------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
             GRG  RVR R+              +E++G G W +VV+EIPY VQK +LIE+IA+LI
Sbjct: 241 ETGRGAIRVRGRFSTGRDEAGNWEESGIEKLGGGQWQLVVSEIPYMVQKGKLIEQIAQLI 300

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
             K++P+LEDIRDES E +R+VL PK+R++DPDLL ES++ L+D+ETRF LN+NVL   R
Sbjct: 301 ADKKLPILEDIRDESDEQIRLVLIPKSRNVDPDLLKESLYRLTDLETRFGLNLNVLDSRR 360

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
            P V+ L  +L+EW+  + ++L RRS  R+  I  R+E+L+G +IAYLN+D II IIR E
Sbjct: 361 TPGVLGLKLVLQEWVISQIDILLRRSRHRLDKIASRLELLEGYIIAYLNLDRIIEIIRTE 420

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           D+PKPVM++ F LT+ Q +AILN+RLRSLRKLEE +++ E D LLAE+E++  LL+S  +
Sbjct: 421 DEPKPVMMAEFELTDRQAEAILNMRLRSLRKLEEMELRKERDALLAEQEELQKLLDSPAR 480

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
           Q  ++  ++  +++ +++ T LGRRRTT  E +   +     AMIEKEP+TV++S +GWI
Sbjct: 481 QRTRLKRDLAALRKDYAEDTALGRRRTTIAEAAPT-REFSMDAMIEKEPVTVILSAKGWI 539

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           R+ K H        FKEGD    ALH  TTD++L+   +G+ YTL A  L   RG GE I
Sbjct: 540 RAAKGHVPLDGDFKFKEGDGPAFALHCQTTDKLLVAVDNGRFYTLGADKLPGARGFGEPI 599

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + ++D++ +  IV+   Y    +LL+ ++ G  F  E  E++A TRKG+  +      K+
Sbjct: 600 RTMVDIDPDAQIVSVLPYKPKGQLLLAANTGRGFAAEMDELLAETRKGRGVVSTKPGVKL 659

Query: 651 KLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEG 708
            +V ++    DHVAV+GENRKL+IF++ ++P +++G+GV LQ YKDG +SDVI  ++ +G
Sbjct: 660 AVVREIAPEHDHVAVIGENRKLVIFALSEVPLLAKGQGVTLQRYKDGEMSDVITLRLEDG 719

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           LTW         R E DLL W   RG  G L P GFPR  +F
Sbjct: 720 LTWAMGGESGRTRVEKDLLPWKVARGAAGRLPPNGFPRDNRF 761


>gi|162148787|ref|YP_001603248.1| DNA topoisomerase IV subunit A [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787364|emb|CAP56959.1| putative DNA topoisomerase 4 subunit A [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 743

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 370/729 (50%), Positives = 519/729 (71%), Gaps = 5/729 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
              +++   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR+I+AM ++ LD  + F
Sbjct: 5   TSGHIEETRLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMIYAMRQLRLDPTSGF 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG+IDGD+AAA RYT
Sbjct: 65  KKCARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARMT+VA  +L+G+D+D+VDFR TY+ E+ EPVV  + FPNLLANG +GIAVGMATSIP
Sbjct: 125 EARMTEVARALLEGIDDDSVDFRPTYDGEEQEPVVLSAAFPNLLANGAAGIAVGMATSIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HNV EIC AA+ LI +P+ ++  L+E + GPDFPTGG+IVE R +++++Y  GRG  R+
Sbjct: 185 PHNVGEICSAAIRLIRSPDATVADLMEDMPGPDFPTGGLIVEDRTTLLQAYETGRGSMRI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RARW VE+   G+W +VVTEIPYQVQKSRLIE+IA+L+  K++PLL DIRDES  D+R+V
Sbjct: 245 RARWSVEQGRFGTWQVVVTEIPYQVQKSRLIEQIADLMEQKKLPLLGDIRDESTTDIRLV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L PK+R ++P++LME++F  + +E+RF LNMNVL   RVP V  L  +L+ WL HR +VL
Sbjct: 305 LEPKSRGVEPEVLMETLFRATALESRFALNMNVLGADRVPGVRSLREVLRAWLDHRHDVL 364

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RRS  R+QA+DRR+EIL G L  YLN+DE+I IIR ED  K  +++ FSLTE Q ++IL
Sbjct: 365 QRRSRHRLQAVDRRLEILDGFLAVYLNLDEVIRIIREEDDAKAGLMATFSLTELQAESIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           N+RLRSLR+LEE +I+ E   L AE+  + +LL S   +W +I  E++ +++ F  +  L
Sbjct: 425 NMRLRSLRRLEELEIRKEHAALTAERGDLTALLGSEPLRWKKITEEVKAIRKAFG-AGAL 483

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           G RR+      RA + +  +A +E+EP+T+++S +GW+++LK H +D +A  FKEGD  +
Sbjct: 484 GTRRSELAAPPRAIELSAIEA-VEREPLTLILSAKGWVKTLKGHGIDPTAQKFKEGDGFR 542

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           +A+   +TDR+ + +TDG+A+TL A +L  GRG G+ I+LLI+L++++D+V  F      
Sbjct: 543 LAVECQSTDRLCVFATDGRAFTLRAADLPRGRGDGQPIRLLIELSNDEDLVAVFPVREGT 602

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           + L+ SS G   ++ + +++A  R GK  L +   E  ++ + V GDHV V+G+NR++L+
Sbjct: 603 RHLLASSAGRGLVIRDEDLVAEKRTGKQVLNLKDAESARICLPVEGDHVVVLGQNRRMLV 662

Query: 673 FSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           F + Q+PEM+RG GV LQ YK+GG+ D       +G  W D A     R   D   +LGK
Sbjct: 663 FPVAQLPEMARGLGVALQKYKEGGLMDACLLSSTDGAAWPDPA---RIRPFADFRDYLGK 719

Query: 733 RGGVGSLVP 741
           R  VG   P
Sbjct: 720 RADVGRPAP 728


>gi|329121426|ref|ZP_08250050.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister
           micraerophilus DSM 19965]
 gi|327469341|gb|EGF14811.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister
           micraerophilus DSM 19965]
          Length = 812

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 250/755 (33%), Positives = 394/755 (52%), Gaps = 20/755 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  + +  L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     F+
Sbjct: 5   EGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD +VY+S VR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 65  KSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM +++  +L+ +D+D VDF   Y+    EPVV PS+ PNLL NG+ GIAVGMAT+IPS
Sbjct: 125 MRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIPS 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +   A+IDNPEI++++L+ Y+ GPDFPTG  I+  ++ I ++YR GRG  +VR
Sbjct: 185 HNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGA-IIMGKKGIQDTYRTGRGSIKVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE+  G   IVVTEIPYQV K+RL+E IAEL   K I  +  +RDES  +   ++
Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                 ++P +++ ++F  + +E  F   M  L     P+V+ L  ++  +L H+ EV+ 
Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVD-GHPRVLSLKQMMYYYLKHQEEVIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RRS + +     +  IL+GLLIA  +IDE+I  IR            +S+F L+E Q  A
Sbjct: 363 RRSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSKFELSEKQSVA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RLR L  LE  +I+S+  +++     ++ LL+   +    +  E+ E+KE F    
Sbjct: 423 ILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLLSDRNKIMKVVKDELIEIKEKFGDER 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                ++T               +   +   +       IR  +     +S +  K+ D 
Sbjct: 483 RTQFEKSTEGFDLTDLVPDEPMTITVTKHNYIKRMESSDIRIQRKGGRGVSGMKMKDDDY 542

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA---IQLLIDLNHNQDIVTAFV 607
           +   ++  T +R+L  + +GK Y                   I  +  L  ++ +     
Sbjct: 543 VWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSRTARGSALINFIPTLEKDERVTEMLD 602

Query: 608 YDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
            D +      LL+++  G        E     + G   L+++  +++  V+ V GD  V 
Sbjct: 603 PDMSTEGVKYLLMITRYGYVKKTLIEEYKHINKNGIIALRLNEGDRLVKVIPVVGDEDVI 662

Query: 663 VVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           +       + FSI  D+I  + R   GV       G   +V+   I +       +    
Sbjct: 663 LGTRKGMAIRFSIADDEIRAVGRVAAGVHGIKLSTGD--EVVGAVIADEKDIFTISADGN 720

Query: 720 NRSENDLLGWLGKRGGVGSLVPK-GFPRSGKFLSS 753
            +   +    +  R G G    K GF      +++
Sbjct: 721 AKRNKESAYHVQGRNGKGVRNFKRGFE-VVALVAA 754



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 50/137 (36%), Gaps = 4/137 (2%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A + +   G   A    I L+   ++V A + D    +  +S+ GNA   +ES      R
Sbjct: 676 ADDEIRAVGRVAAGVHGIKLSTGDEVVGAVIADE-KDIFTISADGNAKRNKESAYHVQGR 734

Query: 637 KGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM--SRGKGVRLQSYK 693
            GK         E + LV     D +  V E    +  S  QI       G+GV LQ  +
Sbjct: 735 NGKGVRNFKRGFEVVALVAADDNDELVGVSEGGITIKTSASQISSKKAKAGQGVILQRLE 794

Query: 694 DGGISDVICFKICEGLT 710
           +G     I     E   
Sbjct: 795 EGDRIASIDVVPEENEE 811


>gi|42520999|ref|NP_966914.1| DNA gyrase subunit A [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410740|gb|AAS14848.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 900

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 254/830 (30%), Positives = 399/830 (48%), Gaps = 91/830 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  +S+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +
Sbjct: 1   MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PL+ GQGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +V+  +L  +DED V+FR  Y+  ++EPVV P++FPNLL NG SG+AVGMAT+IP
Sbjct: 121 EARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +A +  ++NPE+++++LLE + GPDFPTGG I+  R  I  ++  GRG   V
Sbjct: 181 SHNLGEIIDACILYVNNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +E++ +    IV+ EIPYQV K +LIEKI EL+  KRI  + +IRDES +    V
Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKGKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R+ +   ++  I  L+ + + F +N  VL+    P +M L  I+  ++  R+EVL
Sbjct: 300 VIDLKRNAEASFILNQILGLTPLRSSFSVNTLVLN-NNRPALMSLKEIITAFVDFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            RR+ FR++    +  I  GL IA L+IDE+I IIR    P                   
Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEIN 418

Query: 420 ----------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                            + LTE Q+ AIL+++L+ L  LE+ ++++EL +++   ++  +
Sbjct: 419 TIIELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            L SG++   +I   ++E+K  F+         +     +          +       + 
Sbjct: 479 FLGSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIK 538

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-- 581
                  R+ +           KE D +      +T    L  S  G+ Y L    L   
Sbjct: 539 RVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYRLKVYKLPLA 598

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRK 637
                G A+  +  L+  + I          D    ++  ++ GN      ++       
Sbjct: 599 EPTARGRALVNIFPLSDGETITNIMPLPSENDENQNIVFATAYGNIRRNSLADFHYIPSN 658

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSY-K 693
           GK  +K+   +K+  V      DHV +     K + F +  + +  SR   GVR     K
Sbjct: 659 GKIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVK 718

Query: 694 DGGISDVICFK------------------------------------------------- 704
           +  +  +                                                     
Sbjct: 719 NDSVISMTILNGIGVATETKELYLKVPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLK 778

Query: 705 -ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   +      + +  +     +  RGGVG        R+G  ++S
Sbjct: 779 LAVNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRNGNVVAS 828



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
           +   +L ++  G        E     R G     +     +   +       GD++ ++ 
Sbjct: 782 NEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRNGNVVASFPVEQGDNIMLIT 841

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +  KL+  S+++I    R  +GV L  +K      V+     E 
Sbjct: 842 DKGKLIRISVNEIRIAGRSTQGVTL--FKTESREKVVSVAKIED 883


>gi|332668539|ref|YP_004451546.1| DNA gyrase subunit A [Cellulomonas fimi ATCC 484]
 gi|332337576|gb|AEE44159.1| DNA gyrase, A subunit [Cellulomonas fimi ATCC 484]
          Length = 870

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 233/781 (29%), Positives = 391/781 (50%), Gaps = 45/781 (5%)

Query: 6   ISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++ +   +E   ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + 
Sbjct: 1   MTETPDQIEHGRIEQVDLQLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDG 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      F K +R+VG+V+GK HPHGD ++YD+LVRL Q +  RYPL++GQGNFG+   D
Sbjct: 61  GYRPDRQFSKCSRVVGDVMGKYHPHGDSAIYDALVRLVQDWSLRYPLVAGQGNFGSPGDD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE +M  ++  +++ +DED VDF D Y+    EP+V P++FPNLL NG++GIA
Sbjct: 121 PAAAPRYTECKMAPLSMEMVRDIDEDTVDFGDNYDGRTQEPLVLPARFPNLLVNGSAGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN++E+ +     +D+PE + E+    LL  I GPDFPTG  I+     I 
Sbjct: 181 VGMATNIPPHNLREVADGVQWYLDHPEATKEELLAALLTRIKGPDFPTGATIL-GHRGID 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG   +RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   R+  + D
Sbjct: 240 EAYRTGRGSITMRAVVNVEEI-QGRICLVVTELPYQVNPDTLAKKIADLVKENRVTGIAD 298

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           IRDE++    + ++    R     +++ +++  + ++  F  NM  L    VP+ + +D 
Sbjct: 299 IRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDTFGANMLALVD-GVPRTLSIDA 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ++ W AH+ EV+ RR+ +R++  + ++ I +G L A   +DE+IA+IR           
Sbjct: 358 FVRHWTAHQLEVIQRRTRYRLRKAEEQIHIYRGYLKALDALDEVIALIRRSPDADEARTG 417

Query: 420 RF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 + E Q +AILNL+LR L  L+  +I    D L A+  + +++L S ++Q   ++
Sbjct: 418 LMELLGVDEVQANAILNLQLRRLAALQRQEITQRHDELQAQIVEFNAILASDERQRTIVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+RE+ + +        RRTT             + +I +E + V I+  G+ +  +S 
Sbjct: 478 DELREIVDKYGDE-----RRTTILPFDGE---VSVEDLIAEEEMVVTITRGGYAKRTRSD 529

Query: 537 SV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +          +     +E D +       T   +L  +  G+ Y   A  L  G    +
Sbjct: 530 NYRAQRRGGKGVRGAQLREDDIVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGGRDAK 589

Query: 589 --AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              +  L+     + I        Y+    L++ + +G       +E  +N   G   + 
Sbjct: 590 GQHVANLLAFQPGETIAQVLDVRNYEQAEHLVLATQRGLVKKTRLTEYDSNRSGGVIAIN 649

Query: 644 VSSE-----EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKD 694
           +  +     +++     V  D  + +V    + + F+     +  M R   GV    ++ 
Sbjct: 650 LREDEEGRPDELVSARLVNSDQDLILVSRKGQSVRFTASDESLRPMGRATSGVTGMKFRG 709

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSEN--DLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 +   + E             +             RGG+G  V      +G  + 
Sbjct: 710 DDELLAMDV-VREDAFLFTVTEGGIAKRTALTVENYRQQGRGGLGIKVANLPEANGDLVG 768

Query: 753 S 753
           +
Sbjct: 769 A 769



 Score = 41.7 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 4/140 (2%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--LPAGNLLSG 583
           +   +R +   +  ++ + F+  D L           +  ++  G A    L   N    
Sbjct: 688 SDESLRPMGRATSGVTGMKFRGDDELLAMDVVREDAFLFTVTEGGIAKRTALTVENYRQQ 747

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTF 641
              G  I++      N D+V A V D+  ++LV+  +G       +E+ A   T +G  F
Sbjct: 748 GRGGLGIKVANLPEANGDLVGALVTDADDEVLVIMERGKIVRSATTEVNATGRTTQGVIF 807

Query: 642 LKVSSEEKMKLVVKVTGDHV 661
            K  + +++  V + T  H+
Sbjct: 808 AKPDNGDRIIAVARNTERHL 827


>gi|192362361|ref|YP_001983586.1| DNA topoisomerase IV subunit A [Cellvibrio japonicus Ueda107]
 gi|190688526|gb|ACE86204.1| DNA topoisomerase IV, A subunit [Cellvibrio japonicus Ueda107]
          Length = 752

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 276/756 (36%), Positives = 449/756 (59%), Gaps = 22/756 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++    L E   + +SL+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTEIPVLPEAE-ERISLKDYTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+VIGK HPHGD + Y+++V +AQPF  RY L+ GQGN+G+ D   
Sbjct: 60  LKASAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYTLVDGQGNWGSPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T+ +E++L  + +  VD++  ++    EP VFP++ PNLL NGT+GIA
Sbjct: 120 SFAAMRYTESRLTKYSEVLLDELGQGTVDWQPNFDGTLDEPTVFPARVPNLLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  A + L+DNP+ S+  L ++++GPD PT   I+  R+ +++ Y 
Sbjct: 180 VGMATDIPPHNLREVVNACVHLLDNPQASVTDLCQFVLGPDMPTEAEIISPRDELIKMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  +E       IV+T +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 240 TGRGSVRMRAVWQKDEESGD---IVITALPHQVSGAKILEQIAAQMQAKKLPMVADLRDE 296

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + +M+ +F  +++E  + +NMNV+ +   P V  L  IL 
Sbjct: 297 SDHENPTRLVVVPRSNRVDLEQVMQHLFATTELERTYRVNMNVIGIDGRPAVKSLSKILG 356

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ R     RR  +R+  ++RR+ +L+GLLIA+LN+DE+I IIR ED PK  ++ RF 
Sbjct: 357 EWLSFRTVTTRRRLQYRLDKVERRLHLLQGLLIAFLNLDEVIRIIREEDDPKAELMKRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE+Q + IL  +LR L +LEE +I+ E  +L  E++++ S+L S  +  N +  E+ + 
Sbjct: 417 LTEDQTEYILETKLRQLARLEEMKIRGEQSDLEKERDQLQSVLGSAVKLKNLVRKELLQA 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EPITVVIS++GWIRS K H +D + 
Sbjct: 477 AEQYGD-----DRRSPIVVRAEAQALSETELM-SVEPITVVISDKGWIRSAKGHDIDPTG 530

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS K A+H  +   ++LL + G++Y +PA NL S RG GE +   I+       
Sbjct: 531 LSYKAGDSFKFAVHGKSNQNVILLDSTGRSYAIPAHNLPSARGQGEPLSGRINPPSGATF 590

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               +     ++L+ S  G  FI +  ++ +  + GK  L +    ++     +      
Sbjct: 591 EGVLMGADDQRVLLASDAGYGFIAKLDDLASKNKSGKALLTLPDNAQVLPPQLINDPAQA 650

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            +A V  + +LL+F + ++PE++RGKG ++ +               +   +   +  + 
Sbjct: 651 LLAAVSNDGRLLVFPVTELPELARGKGNKIMNIPSARAAAREEFVVAVSVILPGQVLTLY 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           S  R+      DL  + G+RG  G+ +P+GF +  K
Sbjct: 711 SGKRTITLKLGDLEHYKGERGRRGNKLPRGFQKVDK 746


>gi|256823222|ref|YP_003147185.1| DNA topoisomerase IV subunit A [Kangiella koreensis DSM 16069]
 gi|256796761|gb|ACV27417.1| DNA topoisomerase IV, A subunit [Kangiella koreensis DSM 16069]
          Length = 746

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 278/752 (36%), Positives = 428/752 (56%), Gaps = 25/752 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E ++  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 1   MNYEGIEKKSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLKATAK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 61  YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+   +EL+L  + +  V++   ++    EP V P++ PNLL NGT+GIAVGMAT 
Sbjct: 121 YTESRLAAYSELLLSELGQGTVNWTPNFDGTMDEPEVLPARIPNLLLNGTTGIAVGMATD 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A + L++NP+  +  LLE+I GPDFPT   I+  R  I+E Y  GRG  
Sbjct: 181 IPPHNLAEVGKACVHLLENPKAELPDLLEFIQGPDFPTDAEIITPRADILELYEKGRGSI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+RAR+  E+       IV+T +P+Q   S+++E+IA  + AK++P++ D+RDES  +  
Sbjct: 241 RMRARFEKEDGD-----IVITSLPHQASGSKILEQIAAQMQAKKLPMVSDLRDESDHENP 295

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + LM  +F  +D+E  + +NMN++ +   PQV  L  +LKEWL  R
Sbjct: 296 TRLVIEPRSNRVDIEELMRHLFATTDLERTYRVNMNMIGIDGRPQVKNLRVMLKEWLEFR 355

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            E + RR   R+  +  R+ IL GLLIAYLNIDE+I IIR EDKPK  ++ RF L++ Q 
Sbjct: 356 HETVRRRLQHRLDKVMDRLHILDGLLIAYLNIDEVIHIIRTEDKPKLKLMERFDLSDRQA 415

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++IL L+LR L KLEE +IK E   L  E + +   L S ++    I  EI EV E +  
Sbjct: 416 ESILELKLRHLAKLEEMKIKGEQSELEDEADWLQLTLGSKQRMKTLIKKEIEEVIEQYGD 475

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A   +  +  +  EP+TV++S +GW+R  K H VD   ++++ G
Sbjct: 476 -----DRRSPIVERKEAKALSETEL-LPTEPVTVILSEKGWVRCAKGHDVDAVGMNYRSG 529

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D    +    +    + L + G+ ++L A  L S RG GE +   ++     + +   + 
Sbjct: 530 DKYLDSAQGKSNQYAVFLDSTGRTFSLLANTLPSARGLGEPVTGRVNPIAGAEFMATMMG 589

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665
           +   K L  +  G  F+ + S+++  TR GK FL + S  K+     V          V 
Sbjct: 590 EDDDKFLFATDAGYGFVAKFSDLVTKTRNGKAFLNLPSGSKVVKPCSVKDSASQFCVAVS 649

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQ-------SYKDGGISDVICFKICEGLTWIDSAGRS 718
              ++L+F +  +PE+++GKG ++          ++  +  V      + L  I S  R 
Sbjct: 650 NEGRMLVFPLADLPELAKGKGNKIISIPTAKLKLREEFMIAVTAIGEDDSL-VIHSGKRH 708

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 DL  + G+RG  G  +P+GF R  + 
Sbjct: 709 LTLKPKDLEHYRGERGRRGHKLPRGFQRVERI 740


>gi|167035954|ref|YP_001671185.1| DNA topoisomerase IV subunit A [Pseudomonas putida GB-1]
 gi|166862442|gb|ABZ00850.1| DNA topoisomerase IV, A subunit [Pseudomonas putida GB-1]
          Length = 752

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 279/757 (36%), Positives = 440/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  V +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +IE+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       +VVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVEDGD-----VVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  IL 
Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTILV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR E+ PK  +++RF 
Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEHPKQALIARFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVERAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    +L+ + G++Y+LPA +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLPAHSLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     +V S  G  F+V+  ++ A  + GK  L + +  K+     V     D
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F +  +P++ +GKG ++       ++        +          + 
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAVIPEGATLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+ +   +DL  + G+RG  GS +P+GF R    
Sbjct: 710 AGKRTLSLKGDDLEHYKGERGRRGSKLPRGFQRVDGL 746


>gi|116515057|ref|YP_802686.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116256911|gb|ABJ90593.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 827

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 241/769 (31%), Positives = 391/769 (50%), Gaps = 29/769 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
             + + +K V++   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM  +  ++  
Sbjct: 2   KDIAKEIKQVNIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMYILNNEWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYDS+VR+AQ F  RY LI GQGNFG+IDGD AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDSIVRMAQKFSLRYTLIDGQGNFGSIDGDPAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  +L  ++++ +DF   Y+  +  P + P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMSRIAHEMLSELEKNTIDFVLNYDGTEKIPEILPTKIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+    +A + NP IS+++L+ YI GPDFPT G I+  +  I E+Y+ G+G  
Sbjct: 182 IPPHNLKEVINGCIAYLYNPSISLKELMLYIPGPDFPTSG-IIYGKNGIKEAYKTGKGKI 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            VR+++ +E         +++ E+PYQV KS+LIEKIA L+  K+I  + +IRDES +D 
Sbjct: 241 IVRSKYNIEINKKNKKESLIIYELPYQVNKSKLIEKIAILVKEKKINGITNIRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +     +++  ++ L+ ++T F +NM  L     P+ M L  ILKE++ HR+
Sbjct: 301 MRIVIDIKKDFISQIILNQLYTLTSLQTSFGINMVAL-SSGKPKTMNLKKILKEFIKHRK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------- 414
           +++ R+  F+++  ++++ +L+G  IA  NI+ II +I+N +                  
Sbjct: 360 KIIKRKCLFKLKKSNKKMHLLEGFAIALNNINTIIHLIKNSENHTIAKKKLKKINWKKEN 419

Query: 415 ---PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                    F  +  Q  AILN++L  L  LE+ +I  E + L+ +  K+  +L++    
Sbjct: 420 NSSKKNKKYFYFSNKQSLAILNIKLNKLTSLEKKKINLEYNKLIKKTIKLKKILSNKNIL 479

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
             +I  E+ E+K+ FS +                        +       V         
Sbjct: 480 EKKIEKELNEIKKKFSDTRKTKIISKMSEINIEDMIVKETVVVTLSYSGYVKYQPISDYN 539

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEA 589
           + K      SA   KE D +   L A++ D IL  S+ G  Y +        S    G+ 
Sbjct: 540 AQKRGGRGKSAAKTKEEDYITNLLVANSHDTILCFSSRGLLYWMKVYQLPETSRNARGKP 599

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  L+ L   + I T      Y S+  + + ++ G        +       G   + +  
Sbjct: 600 IVNLLPLTSKERITTILPISKYKSSINIFMATALGFVKKTSLIQFKKPRNSGIIAINLRK 659

Query: 647 EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +K+  V   TG +++ +     K++ FS   I +M R   G+R     +     V    
Sbjct: 660 NDKLIGVSLTTGNNNICMFTSKGKVVQFSEKTIRKMGRTASGIRGMKITNNDRL-VSLLV 718

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    +      Y +  N     +  R   G L  +   ++G  + +
Sbjct: 719 PNKKDDILIVTANGYGKRTNINQFPIKSRATKGVLSIRVTQKNGVVIGA 767


>gi|239999134|ref|ZP_04719058.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
 gi|268594969|ref|ZP_06129136.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
 gi|268548358|gb|EEZ43776.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
          Length = 916

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 239/851 (28%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKN-GVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTW 711
              +    
Sbjct: 893 VAEDESEL 900



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
                +  +I    R   G   + +   E +  + +V  D 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897


>gi|157827322|ref|YP_001496386.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389]
 gi|157802626|gb|ABV79349.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389]
          Length = 905

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 241/833 (28%), Positives = 388/833 (46%), Gaps = 91/833 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++N+    N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G
Sbjct: 1   MTDNNS---SNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                A++KSARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+
Sbjct: 58  NHANRAYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+RM +VA  +++ +D++ V F   Y+  + EP V PS FPNLL NG+ GIAV
Sbjct: 118 AAAMRYTESRMAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A    +DN +I I  LLE + GPDFPT GII+     I  +Y  
Sbjct: 178 GMATNIPPHNLGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIIL-GVNGIKSAYLT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +G G   I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES
Sbjct: 237 GRGSIAIRGRAEIENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  ++
Sbjct: 297 NKNGIRIYIELKKDIVAEVVLNQIYSCTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
           + R  V+  R+ + +     +  IL GL IA  NIDEII II+    P            
Sbjct: 356 SFREVVITNRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSW 415

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 + S TE Q  AIL +RL+ L  +E+ +++ +L NL  E
Sbjct: 416 DALNILPLVKLVDDKAMLNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATE 475

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +  ++L S ++    +  E+ +VKE F+           F +         +  +   
Sbjct: 476 ITEYLNILGSRERLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVT 535

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               +        R+ K      S L  ++ D         T   +L  S  G+ Y+L  
Sbjct: 536 LGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKL 595

Query: 578 GNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
             L      G+   +  ++ L  ++ I                 ++  ++KGN    +  
Sbjct: 596 YKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLL 655

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
           +       GK  +++  ++K+  V     D H+ +  ++ K L F ++ +    SR   G
Sbjct: 656 DFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRTSDG 715

Query: 687 VRLQSYKDGGISDVICFK------------------------------------------ 704
           VR     +      +                                             
Sbjct: 716 VRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEEFNSEELGVDLTAE 775

Query: 705 -----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  R G G +      ++G  + 
Sbjct: 776 SILEMANSEEFILTVTENGFGKRSSAYGYRITDRSGSGIINMDINDKTGLVVG 828



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 5/105 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           + +S   +L V+  G              R G   + +   +K   +  V+ V   D + 
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRSGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  + KL+   ++ +    R   GV L    DG           
Sbjct: 840 LITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAE 884



 Score = 57.5 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 67/236 (28%), Gaps = 60/236 (25%)

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI-- 631
            +   +LL  +      ++ I L+ +  ++          +L+ +  G A       +  
Sbjct: 648 NIRRSDLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRV 707

Query: 632 -IANTRKGKTFLKVSSEEKMKLVVKVTG-------------------------------- 658
             + T  G   ++++ ++ +  +  + G                                
Sbjct: 708 IKSRTSDGVRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEEFNSEE 767

Query: 659 -----------------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD--GGIS 698
                            + +  V EN      S        R G G+      D  G + 
Sbjct: 768 LGVDLTAESILEMANSEEFILTVTENGFGKRSSAYGYRITDRSGSGIINMDINDKTGLVV 827

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
            V+  K+ + L  I ++G+            +  R   G  + +     G K +S+
Sbjct: 828 GVMPVKMDDELMLITNSGK--LIRCKLETVRITGRNTSGVTLFRLDD--GEKVVSA 879


>gi|239948091|ref|ZP_04699844.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922367|gb|EER22391.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 905

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 243/825 (29%), Positives = 382/825 (46%), Gaps = 88/825 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
             N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++
Sbjct: 6   SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYR 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE
Sbjct: 66  KSARIVGEVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RM +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP 
Sbjct: 126 SRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R
Sbjct: 186 HNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   + 
Sbjct: 245 GRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIF 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+ 
Sbjct: 305 IELKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVIT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------ 415
            R+ + +     R  IL GL IA  NIDEII II+  +                      
Sbjct: 364 NRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILPL 423

Query: 416 ----------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                         + S TE Q  AIL +RL+ L  +E+ + + +L NL  E  +  ++L
Sbjct: 424 VKLVDDKAMLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKFEEDLKNLATEITEYLNIL 483

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +    +  E+ +VKE F+           F +         +  +       +   
Sbjct: 484 GSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQHEEMVVTVTLGGYIKRV 543

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                RS K      S L  ++ D         T   +L  S  G+ Y+L    L     
Sbjct: 544 PLSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNP 603

Query: 586 HGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRK 637
            G+   I  ++ L  N+ I                 ++  ++KGN    +  +       
Sbjct: 604 QGKGRPIVNILPLKENEHITNIMPLPENQDEWNNLNIMFATAKGNIRRSDLLDFKKIQSN 663

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSY-K 693
           GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   GVR     +
Sbjct: 664 GKIAIRLDEDDKLIDVKPCKEDEHILLATKVGKALRFPVESLRVIKSRTSDGVRGMKLAR 723

Query: 694 DGGISDVIC------------------------------FKICE---------------- 707
           +  +  +                                F   E                
Sbjct: 724 EDSVISMTVLKGISSTKEDRDAYLTVPWEKRLEIAKGEAFNPEELGVALTADSILEMANF 783

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      + +  +     +  RGG G +      ++G  + 
Sbjct: 784 EEFILTVTENGFGKKSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 5/105 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           + +    +L V+  G              R G   + +   +K   +  V+ V   + + 
Sbjct: 780 MANFEEFILTVTENGFGKKSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDNELM 839

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  + KL+   ++ +    R   GV L    +G     +     
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDEGEKVVSVSLIAE 884



 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 53/225 (23%), Gaps = 53/225 (23%)

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI-- 631
            +   +LL  +      ++ I L+ +  ++          +L+ +  G A       +  
Sbjct: 648 NIRRSDLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKVGKALRFPVESLRV 707

Query: 632 -IANTRKGKTFLKVSSEEKMKLVVKVTG-------------------------------- 658
             + T  G   +K++ E+ +  +  + G                                
Sbjct: 708 IKSRTSDGVRGMKLAREDSVISMTVLKGISSTKEDRDAYLTVPWEKRLEIAKGEAFNPEE 767

Query: 659 -----------------DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDV 700
                            + +  V EN      S        RG  G+      D     V
Sbjct: 768 LGVALTADSILEMANFEEFILTVTENGFGKKSSAYGYRITDRGGSGIINMDINDKTGLVV 827

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
               +      +                 +  R   G ++ K   
Sbjct: 828 GVMPVKMDNELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDE 872



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 2/105 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A+  + IL ++ +G      A         G  I  +   +    +V         +L+
Sbjct: 780 MANFEEFILTVTENGFGKKSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDNELM 839

Query: 616 VVSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           ++++ G     +     I      G    K+   EK+  V  +  
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDEGEKVVSVSLIAE 884


>gi|89092023|ref|ZP_01164978.1| DNA topoisomerase IV subunit A [Oceanospirillum sp. MED92]
 gi|89083758|gb|EAR62975.1| DNA topoisomerase IV subunit A [Oceanospirillum sp. MED92]
          Length = 759

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 277/753 (36%), Positives = 451/753 (59%), Gaps = 23/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            T  E+  + ++L+   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   
Sbjct: 4   QTTFEDGTERLALKDFTEKAYLDYSMYVILDRALPHVGDGMKPVQRRIIYAMSELGLKAS 63

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA
Sbjct: 64  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAA 123

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+ + AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 124 MRYTESRLARYAEVLLSEISQGTVDWVPNFDGTMREPAILPARLPNVLLNGTTGIAVGMA 183

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T I  HN++E+ +A + L+DNP   ++++ E + GPD PT   I+ SR  + + Y  GRG
Sbjct: 184 TDILPHNLREVAKACVHLLDNPRADLDEITEIVPGPDMPTDAEIITSRRELKKVYETGRG 243

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA +  E+       I++T +P+QV  ++++E+IA  +  K++P++ D+RDES  +
Sbjct: 244 SVRMRAVYTKEQGE-----IIITALPHQVSGAKILEQIAAQMQQKKLPMVSDLRDESDHE 298

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + LM  +F  +D+E  + +NMN++ +   PQV  L  IL EWL+
Sbjct: 299 NPTRLVIIPRSNRVDVEQLMAHLFASTDLERTYRVNMNMIGVDGKPQVKDLRQILVEWLS 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R E++ +R + R+  +  R+ IL+GL++AYLNIDE+IAIIR+E+ PK  ++ RF LTE 
Sbjct: 359 WRTEIVRKRLNHRLAKVLDRLHILEGLMVAYLNIDEVIAIIRHEEDPKAELIKRFGLTEI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL+L+LR L KLEE++I+SE + L  E++K++ +L S  +    I  EI++  E +
Sbjct: 419 QADAILDLKLRHLAKLEEFKIQSEQNELEEERKKLEGILGSDAKMRKLIKKEIQDAAEEY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A +A  ++ ++  +P+TVVIS +GWIR+ K H +D   L++K
Sbjct: 479 GD-----DRRSPIVEREEA-QAFSEKDLLSSDPVTVVISKQGWIRAAKGHEIDAVGLNYK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+ K+A    T    +LL T G+++T+   NL S RG GE +   I L     I  A 
Sbjct: 533 SGDAFKLACKGRTNQPTILLDTTGRSFTIETHNLPSARGQGEPVTGRITLPKGSTIDAAV 592

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAV 663
                 K+L+ S  G  F+ + S++ + T+ GK  L +     +   +KV     D +A 
Sbjct: 593 AGKDADKILMASDAGYGFVAKISDLTSKTKNGKAALTLPKNANIISPIKVATPETDLLAA 652

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAGR 717
           V    +LL+F + ++PE++RGKG ++ +           +   +     +    + +  +
Sbjct: 653 VTNEGRLLVFPVSELPELARGKGNKIINIPSARAAAREELVVALATLSKDDTLMVHAGKQ 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 +D+  + G+RG  G+ +P+G+ R    
Sbjct: 713 HLRLKPSDIEHYRGERGRRGNKLPRGYQRVDSL 745


>gi|157964271|ref|YP_001499095.1| DNA gyrase subunit A [Rickettsia massiliae MTU5]
 gi|157844047|gb|ABV84548.1| DNA gyrase subunit A [Rickettsia massiliae MTU5]
          Length = 906

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 241/829 (29%), Positives = 383/829 (46%), Gaps = 88/829 (10%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
                 N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G    
Sbjct: 3   TDKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHAS 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++KSARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA 
Sbjct: 63  KPYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE+RM +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT
Sbjct: 123 RYTESRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG 
Sbjct: 183 NIPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGS 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R R  +E +G     I++TEIPY V K+RLIEKIAE++  KRI  + D+RDES ++ 
Sbjct: 242 IIMRGRAEIENIGNNRQAIIITEIPYMVNKARLIEKIAEMVKEKRIEGISDLRDESNKNG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R 
Sbjct: 302 VRIFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFVSFRE 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------- 415
            V+  R+ + +     R  IL GL IA  NIDEII II+  + P                
Sbjct: 361 VVITNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMACQWEALN 420

Query: 416 --------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                             + + TE Q  AIL +RL+ L  +E+ +++ +L NL  E  + 
Sbjct: 421 ILPLVKLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEY 480

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
            ++L S  +    +  E+ +VKE F+           F +         +  +       
Sbjct: 481 LNILGSRTRLLEILKAELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGY 540

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           +        R+ K      S L  ++ D         T   +L  S  G+ Y+L    L 
Sbjct: 541 IKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLP 600

Query: 582 SGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIA 633
                G+   +  ++ L  N+ I                 ++  ++KGN    +      
Sbjct: 601 LSNPQGKGRPMVNILPLKANEYITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLAFKK 660

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQ 690
               GK  +++  ++K+  V     D H+ +  +  K L F+++ +    SR   GVR  
Sbjct: 661 LQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFAVESLRVIKSRTSDGVRGM 720

Query: 691 SY-KDGGISDVICFK--------------------------------------------- 704
              K+  +  +   K                                             
Sbjct: 721 KLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNPEELGVSLTAPAILE 780

Query: 705 -ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +      + +  +     +  RGG G +      ++G  + 
Sbjct: 781 MAKSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 829



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           +  S   +L V+  G              R G   + +   +K   +  V+ V   D + 
Sbjct: 781 MAKSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 840

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           ++  + KL+   ++ +    R   GV L    DG     +  
Sbjct: 841 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSL 882



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 56/207 (27%), Gaps = 57/207 (27%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI---IANTRKGKTFLKVSSEEKM 650
           I L+ +  ++          +L+ +  G A       +    + T  G   +K++ E+ +
Sbjct: 669 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFAVESLRVIKSRTSDGVRGMKLAKEDSV 728

Query: 651 KLVVKVTG-------------------------------------------------DHV 661
             +  + G                                                 + +
Sbjct: 729 ISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNPEELGVSLTAPAILEMAKSEEFI 788

Query: 662 AVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD--GGISDVICFKICEGLTWIDSAGRS 718
             V EN      S        RG  G+      D  G +  V+  K+ + L  I ++G+ 
Sbjct: 789 LTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELMLITNSGK- 847

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
                      +  R   G ++ K   
Sbjct: 848 -LIRCKLESVRITGRNTSGVILFKLDD 873



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 2/103 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A + + IL ++ +G      A         G  I  +   +    +V         +L+
Sbjct: 781 MAKSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 840

Query: 616 VVSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++++ G     +     I      G    K+   EK+  V  +
Sbjct: 841 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLI 883


>gi|189184286|ref|YP_001938071.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda]
 gi|189181057|dbj|BAG40837.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda]
          Length = 905

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 247/836 (29%), Positives = 384/836 (45%), Gaps = 93/836 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      E N+  +S++  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM E G
Sbjct: 1   MSEQ-EYKESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
             +   ++KSAR+VG+VIGK HPHG+ +VYDSLVR+AQ F  R PL+ GQGNFG++DGD+
Sbjct: 60  YHYNKQYRKSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDA 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ +VA  +L+ +++D VDF+  Y+  + EP V P+ FPNLL NGT GIAV
Sbjct: 120 AAAMRYTEVRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  A IDN +I+I +L+E + GPDFPTGG I+     I  +Y  
Sbjct: 180 GMATNIPPHNLCEVVDACCAYIDNNDITIIELMELVKGPDFPTGGQII-GTFGIKSAYNT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VR +  + E       I++TEIP+ V K+ L+EKIAEL+  K+I  +  IRDES
Sbjct: 239 GRGKIIVRGKTDI-ESDSLKHAIIITEIPFMVNKASLVEKIAELVNDKKIEGISTIRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    V+    +  + DL++  ++  + ++T F + M  L    +P+ M L  I+  + 
Sbjct: 298 NKSGIRVVIELKKHANTDLILNQLYSYTSLQTTFNVMMLALD-QGIPKTMTLKDIIVAFT 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
             R EV+ +R+ F +     +  IL G++IA  NIDE+I IIR+    +           
Sbjct: 357 NFREEVITKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMW 416

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 +  LTE Q  +IL LRL+ L   E  +++ EL+NL+ E
Sbjct: 417 NISDVYDLVKLVDDRAILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKE 476

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +    +L S  +    +  E+ ++KE FS +         F +         +  +   
Sbjct: 477 IKAYLEILGSRDKLLETMKFELNQIKEQFSTTRLTTIENQEFEQDIEDLIPEEEVVVTVT 536

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               +        R+ K           +  D +      +T   IL  S  G+ Y L  
Sbjct: 537 LAGYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLKV 596

Query: 578 GNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD-------STCKLLVVSSKGNAFIVEE 628
             L  G    +   I  LI +  N+ I                  ++  +  GN    + 
Sbjct: 597 YKLPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRNDL 656

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE-MSRGK- 685
           S+       GK  +++   + +  V     G+HV +  +N K + F +  +    SR   
Sbjct: 657 SDFKHIASNGKIAIRLDEGDSLISVKSCDEGNHVLLATQNGKAIRFPVKDLRVFKSRTSD 716

Query: 686 GVRLQSYKDGGISDVICFK----------------------------------------- 704
           GV+            +                                            
Sbjct: 717 GVKAIKLAANDAVISMTILKGINCSLEVRENYLNLPVNNRLLIAKNKSLQPNIDLSKYNL 776

Query: 705 --------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                          +  +   Y +  +     + KRGG G       P++GK +S
Sbjct: 777 TEDEMLTMASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGIANMNVSPKTGKVVS 832



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVA 662
           +  +   +L VS  G        E     R GK    +     + + + ++     + + 
Sbjct: 784 MASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGIANMNVSPKTGKVVSVLSACQDNELM 843

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICE 707
           ++  + KL+   ++ +  + R   GV L    KD  +  +   K  +
Sbjct: 844 LITSSGKLIRCQLNSVRIIGRSTSGVILFKTSKDEKVVSIDTIKDTD 890


>gi|268323308|emb|CBH36896.1| DNA gyrase subunit A [uncultured archaeon]
          Length = 843

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 246/792 (31%), Positives = 407/792 (51%), Gaps = 58/792 (7%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S      E  E V  VS+   +   Y+ YA+S I  RA+PD RDG KPVHRRI++ M E
Sbjct: 1   MSEDQREAEVRERVIEVSVEDEMTHSYMDYAMSVIVGRALPDARDGLKPVHRRILYGMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+      KKSARIVG+V+GK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG++DG
Sbjct: 61  LGVTHNRPHKKSARIVGDVLGKYHPHGDVAVYDTMVRMAQDFSYRYPLVDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEAR++++A  +L  +++D V++   ++    EP + P+K PNLL NG+SGI
Sbjct: 121 DAAAAMRYTEARLSKIAGELLVDLEKDTVEWSPNFDNSLKEPQILPAKLPNLLINGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT++P HN+ E+ +  + +I+ PE+SIE+L++ I  PDFPTGGII+   E I  +Y
Sbjct: 181 AVGMATNMPPHNLTEVVDGVIRVIEEPEVSIEELMQIIKAPDFPTGGIIIG-YEGIKRAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  R+RA+  + EV      IV+ EIPYQV KSRL+E+IAE     ++  +  +RD
Sbjct: 240 ETGRGSIRIRAKAEI-EVKGKKERIVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLRD 298

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      ++       +  +++  ++  + +E  F +    L     P+V+ L  +++ 
Sbjct: 299 ESDRKGMRIVIELKAGANSAIILNRLYKHTQLENTFGVINLALID-GEPRVLTLKELIEC 357

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SR 420
           ++ HR+EV  RR  + ++  ++R+ ILKGL+IA  NIDE+I +I+     K       +R
Sbjct: 358 YIKHRKEVTIRRLQYELERAEKRLHILKGLIIAISNIDEVIRLIKAASDTKTAKSALIAR 417

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q   IL++RL  L  LE  +I++E   L  +   +  +L S  + +  +  ++ 
Sbjct: 418 FELSEEQAKEILDMRLSRLSALERDKIETERAELETKINWLKEVLGSEARIYELLKEDLI 477

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH---- 536
           E K+ +  +     RRT   E         ++  +E++ + + ++ R +++ L +     
Sbjct: 478 EQKDKYGDA-----RRTNIEE----MVTLSERDFVEEKEVILYLTQRDYVKRLPADIFKQ 528

Query: 537 ----SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI 590
                  ++ +  KE D +   + A T +R++  +  GKAY +    +        G+ +
Sbjct: 529 QMRGGKGIAVIEKKEDDKIVNFIRASTRERLIFFTEFGKAYQVKTYEIPPSSRHSKGKPL 588

Query: 591 QLLIDL----NHNQDIVTAFVYDST-----------CKLLVVSSKGNAFIVEESEIIANT 635
             +  L       +  VTA                   L+  + +G       +++ A  
Sbjct: 589 VNIPGLSISTEEREKFVTAVAIPEEVDKGIETNTEGAYLVFATKRGVVKRSSLAKLKAIR 648

Query: 636 RKGKTFLKVSSEEKMKLVVKV----TGDH-------VAVVGENRKLLIFSIDQIPEMSR- 683
             G   ++ +  + +  VV +               + +  +N K + F  +++ EM R 
Sbjct: 649 STGVVAVRTTKGDSLADVVLIKPSLDSQDRGAGQNGIILSSKNGKAIFFHEEELREMGRY 708

Query: 684 GKGVRLQSY-KDGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
             GVR     KD  I+ V    +    E    +    + Y +           RGG G +
Sbjct: 709 AAGVRGMRLEKDDEIASVEALDVGVSKEKSRAVTITEKGYGKRTKLDAYRETHRGGKGVI 768

Query: 740 VPKGFPRSGKFL 751
             K   R+GK +
Sbjct: 769 SIKTGERNGKVV 780



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 10/127 (7%)

Query: 594 IDLNHNQDIVTAFVYD-----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  + +I +    D        + + ++ KG     +        R GK  + + + E
Sbjct: 715 MRLEKDDEIASVEALDVGVSKEKSRAVTITEKGYGKRTKLDAYRETHRGGKGVISIKTGE 774

Query: 649 KMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   VV +      D + V   +  +   S+  I    R  +GVR+ + K G     +  
Sbjct: 775 RNGKVVCIKQVKNTDELMVATSDGMVTKISVRSISVQGRNTQGVRIMNVKKGERVVAVDI 834

Query: 704 KICEGLT 710
                 T
Sbjct: 835 LSATEST 841



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
              R + ++  G                G+ +  +     N  +V      +T +L+V +
Sbjct: 736 EKSRAVTITEKGYGKRTKLDAYRETHRGGKGVISIKTGERNGKVVCIKQVKNTDELMVAT 795

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
           S G    +    I    R   G   + V   E++  V       +    E+
Sbjct: 796 SDGMVTKISVRSISVQGRNTQGVRIMNVKKGERVVAV------DILSATES 840


>gi|28543251|gb|AAO42743.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 852

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 246/786 (31%), Positives = 401/786 (51%), Gaps = 50/786 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ ++S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHI-EKKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   + I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHV-- 661
             +D +  L   +  G       SE       G   + +   +++   + V    D +  
Sbjct: 605 TDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFA 664

Query: 662 ---------------------------------AVVGENRKLLIFSIDQIPEMSR-GKGV 687
                                              V +    + F + ++ E+ R  +GV
Sbjct: 665 TGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGV 724

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 725 TAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 784

Query: 747 SGKFLS 752
           +   +S
Sbjct: 785 TKDLIS 790


>gi|328883697|emb|CCA56936.1| DNA gyrase subunit A [Streptomyces venezuelae ATCC 10712]
          Length = 876

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 237/768 (30%), Positives = 393/768 (51%), Gaps = 42/768 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 19  RIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 78

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +
Sbjct: 79  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECK 138

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  ++  +L+ +DE+ VDF+D Y+  + EP V PS+FPNLL NG++GIAVGMAT+IP HN
Sbjct: 139 LMTLSMEMLRDIDEETVDFQDNYDGRNQEPTVLPSRFPNLLINGSAGIAVGMATNIPPHN 198

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   +++P+ S E+    L+E I GPDFPTG  +V  R+ I E+YR GRG   
Sbjct: 199 LREVAAGAQWALEHPDASHEELLDALIERIKGPDFPTGA-LVVGRKGIEEAYRTGRGSIT 257

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+     C+VVTE+PYQ     L +KIA+L+   +I  + D+RDE S+   +
Sbjct: 258 MRAVVEVEEI-HNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 316

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +D++T F  NM  L    VP+ + LD  ++ W+ H+ E
Sbjct: 317 RLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GVPRTLSLDAFIRHWVTHQIE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +  +      +    + E Q
Sbjct: 376 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVEVARGGLMDLLQIDEIQ 435

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+  + +++L S ++Q   ++ E+  + E F 
Sbjct: 436 ANAILEMQLRRLAALERQKIVAEHDELQAKINEYNAILASPERQRAIVSEELAALVEKFG 495

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+              + +I +E I V IS  G+++          K     
Sbjct: 496 D-----DRRSKLVPFDGDMS---IEDLIAEEDIVVTISRGGYVKRTKTEDYRSQKRGGKG 547

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           +     K+ D +     + T   +L  +  G+ Y + A  L        G+ +  L+   
Sbjct: 548 VRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRVKAYELPDAGRDARGQHVANLLAFQ 607

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        Y++   L++ +  G        +  +    G   + +       +++
Sbjct: 608 PDEQIAQILAIRDYEAAPYLVLATKAGLVKKTALKDYDSPRSGGVIAINLRETEDGSDDE 667

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           +     V + D + ++ +  + + F+     +  M R   GV+  S++       +   +
Sbjct: 668 LIGAELVSSEDDLLLISKKAQSIRFTATDDALRPMGRATSGVKGMSFRADDELLSMNV-V 726

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             G     +    Y +        +  RGG+G    K     G  + +
Sbjct: 727 RPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 774


>gi|162329639|ref|YP_469621.2| DNA gyrase subunit A [Rhizobium etli CFN 42]
          Length = 941

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 241/841 (28%), Positives = 396/841 (47%), Gaps = 115/841 (13%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALI++P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R   
Sbjct: 196 SEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 TIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  ++  + ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+
Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------------------ 412
            F ++    R  +L GL IA  NIDE+I +IR                            
Sbjct: 374 KFLLRKARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433

Query: 413 -----PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                 +      ++L+E Q  AIL LRL  L  L   +I  EL+ +  E      +L+S
Sbjct: 434 IDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   +          + +I +E + V +S+ 
Sbjct: 494 RVRIQTIVKDELSAVRDEFGTP-----RRTEIVDGGLEMD---DEDLIAREDMVVTVSHL 545

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  ++ D +      +T   +L  S+ G  Y      
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L   +    G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 606 LPIGTPTSRGKALINMLPLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDF 665

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + FS+D +     R   GV
Sbjct: 666 VQVNRNGKIAMKLEEEGDEILSVETCTDRDDVLLTTALGQCIRFSVDDVRVFAGRNSIGV 725

Query: 688 RLQSYKDGGISDVICFK------------------------------------------- 704
           R  +  +G     +                                              
Sbjct: 726 RGINLGEGDRIISMTIVGHVDAEPWERAAYLKRSAAERRAIGVDEEDIALVGEEVTEEGQ 785

Query: 705 ---------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLS 752
                           +  + + + +  +     +  RGG G        ++   G+ ++
Sbjct: 786 LSDERYEELKAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTS-KTGEIGELVA 844

Query: 753 S 753
           +
Sbjct: 845 A 845



 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 8/109 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        +   + R GK        K     ++     V  GD + +V
Sbjct: 798 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDVICFKICEGLTW 711
            +  +L+   +  I   SR  KGV + S  KD  +  V      E    
Sbjct: 858 SDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISEPEEDDT 906


>gi|320009756|gb|ADW04606.1| DNA gyrase, A subunit [Streptomyces flavogriseus ATCC 33331]
          Length = 875

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 237/789 (30%), Positives = 401/789 (50%), Gaps = 48/789 (6%)

Query: 1   MGVDN---ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVH 54
           M  +N   +      V      V+ V L   ++  YL YA+S I  RA+PD+RDG KPVH
Sbjct: 1   MADENTPVMPEEEPTVPGVGMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVH 60

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR+++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+  
Sbjct: 61  RRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDS 120

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            GNFG+   D AAA RYTE +M  ++  +++ +DE+ VDF+D Y+  + EP V P++ PN
Sbjct: 121 NGNFGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARIPN 180

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGG 230
           LL NG++GIAVGMAT+IP HN++E+   A   ++NPE S E+    L+E I GPDFPTG 
Sbjct: 181 LLVNGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGA 240

Query: 231 IIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
            +V  R+ I E+YR GRG   +RA   VEE+ +G  C+VVTE+P+Q     L +KIA+L+
Sbjct: 241 -LVVGRKGIEEAYRTGRGSITMRAVVAVEEI-QGRQCLVVTELPFQTNPDNLAQKIADLV 298

Query: 291 IAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
              ++  + D+RDE S+   + ++    R     +++ +++  +D+++ F  NM  L   
Sbjct: 299 KDGKVGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVD- 357

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
            VP+ + +D  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   I+E+IA+IR 
Sbjct: 358 GVPRTLSIDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALNAIEEVIALIRR 417

Query: 410 EDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
            +     +  ++    + E Q +AIL ++LR L  LE  +I +E D L A+  + + +L 
Sbjct: 418 SNTVEIAREGLMGLLEIDEIQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILA 477

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S ++Q   ++ E+  + + F        RR+              + +I +E I V IS 
Sbjct: 478 SPEKQRQIVSEELAAIVDKFGD-----DRRSKLVPFDGDMS---IEDLIAEEDIVVTISR 529

Query: 527 RGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+++  K+            +     +E D +     + T   +L  +  G+ Y   A 
Sbjct: 530 GGYVKRTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAY 589

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            L        G+ +  L+    ++ I        Y++   L++ +  G        +  +
Sbjct: 590 ELPDAGRDARGQHVANLLAFQPDEQIAQILAIRDYEAAPYLVLATKGGLVKKTSLKDYDS 649

Query: 634 NTRKGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG- 684
               G   + +       ++++     V+  D + ++ +  + + F+     +  M R  
Sbjct: 650 PRSGGVIAINLRETESGADDELIGAELVSAEDDLLLISKKAQSIRFTATDDALRPMGRAT 709

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            GV+  S+++G     +   +  G     +    Y +        +  RGG+G    K  
Sbjct: 710 SGVKGMSFREGDELLSMNV-VRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIV 768

Query: 745 PRSGKFLSS 753
              G  + +
Sbjct: 769 EDRGSLVGA 777


>gi|149377744|ref|ZP_01895478.1| DNA topoisomerase IV subunit A [Marinobacter algicola DG893]
 gi|149357970|gb|EDM46458.1| DNA topoisomerase IV subunit A [Marinobacter algicola DG893]
          Length = 774

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 281/759 (37%), Positives = 441/759 (58%), Gaps = 27/759 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T  +E  + VSLR   E+ YL Y++  I +RA+P++ DG KPV RRII+AMSE+G
Sbjct: 1   MPEFQT-TDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 60  LKSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+ + A+++L  + +  VD+   ++    EP V P++ P++L NGT+GIA
Sbjct: 120 SFAAMRYTESRLAKFADVLLSELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A + L+D PE + + L E++ GPDFPT   I+  R+ I + Y 
Sbjct: 180 VGMATDIPPHNVREVAAACVRLLDQPEATTDDLCEHVQGPDFPTYAEIITPRKDIRQMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RARW + E G     IVVT++P+QV  +R++E+IA+ +  K++P++ D+RDE
Sbjct: 240 TGRGSLRMRARW-INESGE----IVVTDLPHQVSGNRVLEQIAQQMQTKKLPMVADLRDE 294

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+NV+     P V  L  +L 
Sbjct: 295 SDHENPTRLVIVPRSNRVDQEGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLREMLT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ RR  + RR   R+  +  R+ IL+GLL+AYLNIDE+IAIIR EDKPK  ++SRF 
Sbjct: 355 EWLSFRRTTVTRRLQHRLDKVLARLHILEGLLVAYLNIDEVIAIIRYEDKPKAELMSRFG 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q +AIL L+LR L KLEE +I+ E D L AE++++ S+L S  +    I  E+   
Sbjct: 415 LSGEQAEAILELKLRHLAKLEEMKIRGEQDELSAERDELQSILGSEDRLRELIKDELLAD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   A   +  +  +  +P+TVV+S +GW+R+ K H ++   
Sbjct: 475 AETYGD-----DRRSPIVERREAKAFSETEL-VSNDPVTVVLSEKGWVRAAKGHDIEPEG 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+  +A       + + L + G+AY+L A    S RG GE +   I+       
Sbjct: 529 LSYKAGDAFAMAAKGRNNQQAVFLDSTGRAYSLVAHTFPSARGQGEPLSGRINPPSGATF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + D   ++L+V+  G  F+    ++I+  R GK  + V    K+   V V      
Sbjct: 589 SGLLMGDPARRVLLVTDGGYGFVTSLDDMISKNRNGKAVVSVPKGAKIMSPVVVPNSDKP 648

Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTW 711
             +  +    ++L+F + ++PE+++GKG ++ S        ++  +  V  F   + L  
Sbjct: 649 LYLGAISNEGRMLVFPLSELPELAKGKGNKIISIPSARVQNREEYVVAVAVFAEDDQLEI 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             +  R      +DL  +LG+RG  G  +P+G  R    
Sbjct: 709 -RAGKRKMGLQFSDLEHYLGERGRRGHKLPRGLQRVDAI 746


>gi|148270781|ref|YP_001245241.1| DNA gyrase, A subunit [Thermotoga petrophila RKU-1]
 gi|147736325|gb|ABQ47665.1| DNA gyrase subunit A [Thermotoga petrophila RKU-1]
          Length = 804

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 231/751 (30%), Positives = 379/751 (50%), Gaps = 13/751 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +    +   L E YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  
Sbjct: 1   MPEILINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD  VYD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++AE +L+ ++++ V+  D ++    EP V PSK PNL+ NG SGIAVGMAT+IP
Sbjct: 121 EARLTKLAEEMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A + LID+PE ++E+L+++I GPDFPTG  +V +   + + Y  GRG   V
Sbjct: 181 PHNLSETVDALIYLIDHPEATVEELMQFIKGPDFPTGA-VVVNASELKKVYEEGRGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  VE+  R    +V+TEIPY V K+ LIE+IA++        + +IRDES +    +
Sbjct: 240 RGKVHVEDGKR-VKRVVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++ +++  + ++  F + M V+   + P++M L G+++ +L HR EV+
Sbjct: 299 VIEIPKDTSEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ +  +   RR  +++GLL A   I  ++ I+RN       K  ++    +TE Q  
Sbjct: 359 RRRARYEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLMETLEITEEQAK 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE   +++E  +L+ +  ++  +L   ++    +  E   +K+ +   
Sbjct: 419 AILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKEEFLYLKQQYGDP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +               +       +  +     RS K     ++     E D
Sbjct: 479 RRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRSQKRGGKGITVSKLTEDD 538

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            ++  + A  T   L ++  G+AY L             G  I   ++L   + IV    
Sbjct: 539 EVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALAS 598

Query: 608 YD-STCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH--VAV 663
            +     L++V+  G        E    T   G   +K+   +++     V  +   + V
Sbjct: 599 LNGDGNDLVIVTKSGKIKRTALKEFENATSNRGVRAIKIEPGDEIVSARVVNSEKETLIV 658

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNR 721
             +    + F +  +  M R   GV+    + G  +  V      E    +    + + +
Sbjct: 659 ATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGEEGEILTVTEKGFGK 718

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                L  + +RGG G        ++G  ++
Sbjct: 719 RTPVQLYRIQRRGGTGLRNISDVNKTGYVVA 749



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 8/154 (5%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA--FVYDSTCKLLV 616
             + +++ +  G A   P  ++     +  A    I L    ++V+          ++L 
Sbjct: 652 EKETLIVATKMGMAIRFPVSDVRRMGRNA-AGVQAIKLQPGDEVVSVDVIPPGEEGEILT 710

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLI 672
           V+ KG              R G     +S   K   +  V  V GD  + VV  N  ++ 
Sbjct: 711 VTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVAVRYVRGDEEIVVVTRNGMMIR 770

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           F + +I  + R  KGV+L    D  IS V   K 
Sbjct: 771 FPVSEIGVIGRVTKGVKLIELGDDTISKVAVVKD 804


>gi|116668575|ref|YP_829508.1| DNA gyrase subunit A [Arthrobacter sp. FB24]
 gi|116608684|gb|ABK01408.1| DNA gyrase subunit A [Arthrobacter sp. FB24]
          Length = 902

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 229/770 (29%), Positives = 387/770 (50%), Gaps = 36/770 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              ++ + V+ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 21  EGDVLVDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRP 80

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             +F K AR+VGEV+G+ HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+   D AAA
Sbjct: 81  DRSFNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAA 140

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +++ +DE+ VDF+D Y+ ++ EP + P++FPNLL NG+SGIAVGMA
Sbjct: 141 PRYTETKMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGIAVGMA 200

Query: 189 TSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           T+IP HN++E+ +     + NP    E  +E+LL  I GPDFPTG  I+   + I ++YR
Sbjct: 201 TNIPPHNLREVADGVQWYLANPTASREELLEELLLRIKGPDFPTGATIL-GHKGIEDAYR 259

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA   VEE+  G  C+VVTE+PYQ     L  KIAEL+   +I  + D+RDE
Sbjct: 260 TGRGSITMRAVVNVEEL-EGRTCLVVTELPYQANPDNLAIKIAELVKDGKISGIADLRDE 318

Query: 305 SA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++    + ++    R     +++ +++  + ++  F  NM  +    VP+ + LD  ++ 
Sbjct: 319 TSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFAANMLAIVD-GVPRTLSLDAFIRH 377

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           W+AH+ +V+ RR+ +R++  +    IL+ LL A   +DE+IA+IR  +     +  ++  
Sbjct: 378 WVAHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAARDGLMQL 437

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q  AIL+++LR L  LE  +I+     L A   + +S+L S ++Q   I+ E+ 
Sbjct: 438 LDIDELQARAILDMQLRRLAALERQKIQDRHAELEALIAEYNSILASEERQREIISTELS 497

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-- 538
           E+            RRT        D     + +I +E + V I+  G+++  +S +   
Sbjct: 498 EIVAKHGD-----DRRTKIL--MGFDGDMSMEDLIPEEEMVVTITRGGYVKRTRSDNYRS 550

Query: 539 ------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AI 590
                  +     +  D ++      T   +L  +  G+ Y   A  L+      +   +
Sbjct: 551 QQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELVEAGRDAKGQHV 610

Query: 591 QLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+    ++ I              L++ + +G        +   N   G   + +   
Sbjct: 611 ANLLAFQPDEHIAQVLDLRDYQHAPYLVLATKRGLVKKTRLEDYDTNRSAGVIAINLRDG 670

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICF 703
           +++     V+  D + +V    + + F+     +  M R   GV    +++         
Sbjct: 671 DELVSAQLVSETDDLMLVSRMGQSIRFTATDDALRPMGRATSGVTGMKFREDDELLAADV 730

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +G          Y +        L  RGG+G  V K     G  + +
Sbjct: 731 -VKDGSFVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVGKYQEERGHLVGA 779



 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 8/192 (4%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR 584
                    + S  + A++ ++GD L  A     TD ++L+S  G++    A +      
Sbjct: 648 KTRLEDYDTNRSAGVIAINLRDGDELVSAQLVSETDDLMLVSRMGQSIRFTATDDALRPM 707

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G   +    +    + +++ A V      + +V+  G A      E     R G   +KV
Sbjct: 708 GRATSGVTGMKFREDDELLAADVVKDGSFVFIVTEGGYAKRTAVEEYRLQGRGGLG-IKV 766

Query: 645 ----SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
                    +   + V   D V VV E  K++  S+  +P   R   GV           
Sbjct: 767 GKYQEERGHLVGALIVQEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVIFAKPDKNDRI 826

Query: 699 DVICFKICEGLT 710
             +      GL 
Sbjct: 827 IEVARNSERGLE 838


>gi|6655026|gb|AAF22873.1| topoisomerase II [Bradyrhizobium japonicum]
          Length = 755

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 405/741 (54%), Positives = 533/741 (71%), Gaps = 8/741 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKKS
Sbjct: 12  EIHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI--SGQGNFGNIDGDSAAAYR-YT 132
           A+IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+   GQGNFGNIDGD+ AAY  + 
Sbjct: 72  AKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVEVDGQGNFGNIDGDNPAAYPLHR 131

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            A +T VA L+L+G+DED V+FR  Y+ +  EP+V P  FPNLLANG  GIAVGMATSIP
Sbjct: 132 SAHVTDVARLLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATSIP 191

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+AAL LI+ P+   + LL+++ GPDFPTGGI V+S+++I E+Y  GRG FRV
Sbjct: 192 PHNAAELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQAIAEAYTTGRGSFRV 251

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RARW  EE  RG+W +VVTEIP+ VQKSRLIEKIAEL   K++PL+ D+RDESAEDVRIV
Sbjct: 252 RARWEQEEGARGTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLPLVGDVRDESAEDVRIV 311

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           + PK++++DP L+MES+F L+++E + PLN+NVL  GR+P+V+ L   L+EWL H R+VL
Sbjct: 312 IEPKSKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVVGLAECLREWLDHLRDVL 371

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RRS++R   I+ R+E+L G LIAYLNID++I IIR ED+PKP ++  F LTE Q +AIL
Sbjct: 372 IRRSNYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIRTEDEPKPALMKAFKLTEVQAEAIL 431

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           N+RLRSLRKLEE +I++E  NL  E + I+++L S  +QW ++  ++ +V+++F   T L
Sbjct: 432 NMRLRSLRKLEEMEIRTEDKNLRNELKGINAVLASEAEQWKKVGEQVGKVRDMFGPKTPL 491

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           G+RRTTF +    D A +++A +E+EP+TVV+S++GWIR++K H  DLS L FK+ D L 
Sbjct: 492 GKRRTTFADAPEHDLAAIEEAFVEREPVTVVVSDKGWIRTMKGHVEDLSGLAFKQDDRLG 551

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            A  A TT ++LL +T+GK Y+L    L  GRGHGE I+L IDL      V  FV     
Sbjct: 552 FAFFAETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQEAAPVALFVNKGGR 611

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR---K 669
           K LV S +G  F+V E + +  T+KGK  L V    + + V +V GD VA  G  R   K
Sbjct: 612 KFLVASHEGQGFVVNEDDCVGTTKKGKQVLNVDMPNEARTVTEVVGDTVA--GHRRETAK 669

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           +L+F +DQIPEM+RG+GVRLQ YKDGG+SDV+ F    GLTW DSAGR ++ +  +L  W
Sbjct: 670 MLVFPLDQIPEMARGRGVRLQKYKDGGLSDVVVFDAKAGLTWKDSAGREFSATMKELAEW 729

Query: 730 LGKRGGVGSLVPKGFPRSGKF 750
            G R   G L PKGFP+S KF
Sbjct: 730 QGTRADAGRLPPKGFPKSNKF 750


>gi|83648063|ref|YP_436498.1| DNA topoisomerase IV subunit A [Hahella chejuensis KCTC 2396]
 gi|83636106|gb|ABC32073.1| DNA topoisomerase IV, A subunit [Hahella chejuensis KCTC 2396]
          Length = 759

 Score =  625 bits (1611), Expect = e-177,   Method: Composition-based stats.
 Identities = 270/751 (35%), Positives = 446/751 (59%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE ++   L+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   MFEEGIERRPLKEYTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLSAAAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
            KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA R
Sbjct: 64  HKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGSADDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+ + AE++L  + +  VD+   ++    EP + P++ PNLL NGT+GIAVGMAT 
Sbjct: 124 YTEARLAKYAEVLLSEIGQGTVDWVPNFDGSLDEPSLLPARLPNLLLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +A + ++D+P+ ++E+L EYI GPDFP+GG IV SR  + + Y  GRG  
Sbjct: 184 IPPHNLREVTQACIHMLDHPKATVEELCEYIEGPDFPSGGEIVTSRSDLRQIYETGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           ++RA++  E        IVVTE+P+QV  +R++E+IA+ + AK++P++ D+RDES  +  
Sbjct: 244 KMRAKYTKE-----GQDIVVTELPHQVSGARIMEQIAQQMQAKKLPMVADLRDESDHENP 298

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + LM  +F  +D+E  + +N+NV+ +   P V  L  +L+EWL  R
Sbjct: 299 TRLVIIPRSNRIDAEPLMAHLFATTDLEKNYRVNLNVVGLDGRPAVKDLRVLLQEWLTFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            + + RR  +R+Q +  R+ IL+GLL+A+LNIDE+IAIIR+EDKPKPV++ RF L++ Q 
Sbjct: 359 TQTVRRRLEYRLQKVLARLHILEGLLVAFLNIDEVIAIIRSEDKPKPVLMERFGLSDVQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +L+ +LR L +LEE +I++E D L  E++K++ +L S  +    +  E+++  E F  
Sbjct: 419 EYVLDTKLRQLARLEEMKIRAEQDELEKERKKLEDILGSEAKLRKLVKTELKQDMETFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A +A  +  +I  EP+TVV+S +GW+R+ K H +D   L +K G
Sbjct: 479 E-----RRSPIVERKEA-QAFSETDLIASEPVTVVLSEKGWVRAAKGHDIDAQGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D    A    +    + L   G++Y + A +L S RG GE +   ++           + 
Sbjct: 533 DKFLAAAKGRSHQNAIFLDDTGRSYCVAAHSLPSARGQGEPLTGRVNPPSGAGFTHVLMG 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVG 665
             + K+++ S  G  F+    ++ +  R GK  + +     +   + +      H+  + 
Sbjct: 593 PDSMKVVLASDAGYGFVARLEDLQSKNRAGKALISLPKGACVSPPILLERQNNPHLVAIS 652

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAGRSY 719
              ++L+F + ++PE+++GKG ++             +   +     +    + +  R  
Sbjct: 653 NEGRMLVFPVSELPELAKGKGNKIIGIPSARAQAREEVMSNLAVVGEKDTLVLHAGKRFL 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             + +DL  +LG+RG  G  +P+G  R  + 
Sbjct: 713 KLTFDDLSHYLGERGRRGHKLPRGLQRVDRV 743


>gi|192382538|gb|ACF04290.1| GyrA [Neisseria meningitidis]
 gi|192382540|gb|ACF04291.1| GyrA [Neisseria meningitidis]
 gi|192382552|gb|ACF04297.1| GyrA [Neisseria meningitidis]
 gi|192382556|gb|ACF04299.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  625 bits (1611), Expect = e-177,   Method: Composition-based stats.
 Identities = 241/851 (28%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D PE  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +RA+   E +G+      IV+ EIPYQV K++L+EKI EL+  K +  + 
Sbjct: 240 GYKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTWIDSA 715
              +     D++
Sbjct: 893 VAEDESELSDAS 904



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 794 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 853

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 854 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 883


>gi|209964783|ref|YP_002297698.1| DNA topoisomerase IV subunit A [Rhodospirillum centenum SW]
 gi|209958249|gb|ACI98885.1| DNA topoisomerase IV, A subunit, putative [Rhodospirillum centenum
           SW]
          Length = 757

 Score =  625 bits (1611), Expect = e-177,   Method: Composition-based stats.
 Identities = 394/751 (52%), Positives = 529/751 (70%), Gaps = 18/751 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L  AL ERYL+YALSTI  R++PD+RDG KPVHRR+++AMS++ L+     KKS
Sbjct: 7   EILDKRLAEALGERYLSYALSTIVSRSLPDVRDGLKPVHRRLLYAMSQLRLEPTTPPKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGDQSVYD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEAR
Sbjct: 67  ARVVGDVIGKFHPHGDQSVYDALVRLAQEFAARYPLVEGQGNFGNIDGDNAAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA+ +L G+DEDA DFR TY+ E  EP+V P+ FPNLLANG++GIAVGMAT+IP HN
Sbjct: 127 LTEVAKAMLAGIDEDATDFRPTYDGEGEEPMVLPAAFPNLLANGSAGIAVGMATNIPPHN 186

Query: 196 VQEICEAAL---------ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           V EIC A           A      +++E+L+ +I GPDFPTGG++VESRE+I+E+YR G
Sbjct: 187 VGEICGALNLIIERELLPAPDKRRPVTVEELVSWIPGPDFPTGGVLVESRENILEAYRTG 246

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG FR RARW  E + +G+W I+VT+IPYQVQKSRL+EKIAEL+  K++PLLED+RDESA
Sbjct: 247 RGAFRTRARWQKEPLAQGTWQIIVTQIPYQVQKSRLVEKIAELLAEKKLPLLEDVRDESA 306

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR---VPQVMPLDGILKE 363
           ED+R+VL PK+R++DPD++ME +F  +D+ETRF +NMNVL       VP+VM L  +L+ 
Sbjct: 307 EDIRLVLVPKSRNVDPDVMMEQMFRNTDLETRFSMNMNVLDAREGGLVPRVMTLYEVLRA 366

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           +L HR+EVL RRS  R+  ID R+E+L G LIAYLNIDE+I IIR ED+PK  +++RFSL
Sbjct: 367 FLEHRQEVLLRRSRHRLGEIDHRLEVLGGYLIAYLNIDEVIRIIREEDEPKRELMARFSL 426

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AILN+RLRSLRKLEE++I+ E D L  E+  +  LL  G ++W  I+ E+ E+ 
Sbjct: 427 TDVQAEAILNMRLRSLRKLEEFEIRKENDALTKERGVLVGLLEDGHKRWKAISKEVAEMD 486

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--DLS 541
             F ++T LG RRT   E  +   A   +AMIE+EP+TV +S +GWIR+++ H    +++
Sbjct: 487 RKFGRTTALGERRTLIGEPPKD-LAVPAEAMIEREPVTVFLSEKGWIRTVRGHQSAQEVA 545

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              +K+GD  +  LHA TTDR+LL +  GK YTL    L  GRG GE ++L++DL   + 
Sbjct: 546 GTKYKDGDRERFVLHAETTDRLLLFAGSGKFYTLGVDRLPGGRGFGEPVRLMVDLGEAE- 604

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
           IV    +    +L+V S+ G  F VE  +++A TR GK  L  +      L V   GD V
Sbjct: 605 IVALLRHQPGQRLVVASADGRGFQVEADDVVAQTRAGKQVLTPADGAAAVLAVPAEGDAV 664

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID--SAGRSY 719
           AV+G NRKLL+F ++++P M+RGKGV+LQ YKD  +SD+  F + EGL+W    S  ++ 
Sbjct: 665 AVIGNNRKLLVFKLEELPVMTRGKGVQLQKYKDASLSDLKVFALAEGLSWRMGGSGEKTR 724

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             +  DL GW+  RG  G L P GFP+  +F
Sbjct: 725 TVTLPDLQGWIAYRGTQGKLPPNGFPKDNRF 755


>gi|283954577|ref|ZP_06372096.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414]
 gi|283793981|gb|EFC32731.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414]
          Length = 862

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 245/786 (31%), Positives = 403/786 (51%), Gaps = 50/786 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RY  I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYSTITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + ++E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDANLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKIHI-EKKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +  ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREVMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N          +V++F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNIARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSEILLENLIRDELKEIRNKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAITTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   + I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAV 663
             +D +  L   +  G       SE       G   + +   +++   + V    D + +
Sbjct: 605 TDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEILL 664

Query: 664 -----------------------------------VGENRKLLIFSIDQIPEMSR-GKGV 687
                                              V +    + F + ++ E+ R  +GV
Sbjct: 665 SGSEENLENQEIKNLDDENLENEESASIKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGV 724

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 725 TAIKFKEKNDELVGAIVIENDEQEILSVSAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 784

Query: 747 SGKFLS 752
           +   +S
Sbjct: 785 TKDLIS 790


>gi|300869212|ref|ZP_07113806.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506]
 gi|300332757|emb|CBN59004.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506]
          Length = 893

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 239/809 (29%), Positives = 379/809 (46%), Gaps = 68/809 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +  E  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM+E+GL    
Sbjct: 2   STSESRIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMNELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRQPLIDGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+T +  + +L+ +D + VDF D ++    EP+V PS+ P +L NG+SGIAVGMAT
Sbjct: 122 YTECRLTPLTSDAMLRDIDSETVDFGDNFDGSQQEPLVLPSRIPQILVNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ E  +ALI NPEI+  +L++YI GPDFPTG  I+  + SI E+Y  GRG 
Sbjct: 182 NIPPHNLGEVIEGLMALIANPEITDIELMQYIPGPDFPTGAQIL-GKASIREAYTTGRGS 240

Query: 250 FRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I++TE+PYQ  K+ LIEKIAE++  KR+  + DIRDES
Sbjct: 241 ITMRGVAAIETIEHPGRPDKEAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R   P +++ +++  + ++  F  NM  L     PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALV-NGEPQLLSLKQFLSVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  N+D II +IR+              + 
Sbjct: 360 DFRIETITRRTQYELRKAEERDHLLQGLLIALDNLDAIIHLIRSAADTATAKQELIDTYG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I  E + LL +   +  +L   ++    I  E+ E+
Sbjct: 420 LSEVQSDAILQMQLRRLTALEAQKITQEHEELLEKIADLLDILAKRERILEIIQTEVAEI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K  F+                    A  Q  ++  E   +         +    +   + 
Sbjct: 480 KLKFASPRRTIIEHAEGEIDETDLIANEQAIILLTEQGYIKRMPVSTFEAQSRATRGKAG 539

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
              KE D ++  L     D +L  S  G  Y L +  +   S    G  I  L+ +   +
Sbjct: 540 TKMKEDDGVEHFLSCCDHDSVLFFSDRGVVYCLRSYQIPVSSRTARGTPIVQLLPIPIEE 599

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I +      + +   L++++  G       S        G   + +   ++++ V    
Sbjct: 600 KITSIVSVTEFSNEEYLIMLTRSGFIKKTVLSAFSNIRANGLIAISLEEGDQLRWVRLAR 659

Query: 658 -GDHVAVVGENRKLLIF--SIDQIPEMSRG-KGVRLQSYKDGG----------------- 696
             D + +       + F  + +Q+  + R  +GV+    + G                  
Sbjct: 660 VDDSIIIGSRQGMTIHFRTNHEQLRPVGRATRGVKSMKLRAGDELIGMDILPSSIVASIA 719

Query: 697 -------------------------------ISDVICFKICEGLTWIDSAGRSYNRSEND 725
                                           ++ I     +G   +      Y +    
Sbjct: 720 ELETEDSELEEEELEVSAQEIEVQVEEIEGSDAEEIPTASSQGPWALVITTNGYGKRVPV 779

Query: 726 LLGWLGKRGGVGSLVPKG-FPRSGKFLSS 753
               L +R G G    K    ++  ++++
Sbjct: 780 TQFRLQRRAGKGLTATKFKSKKAKDYVAA 808



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 15/117 (12%)

Query: 615 LVVSSKGNAFIVEESEIIANTRKGK--TFLKVSS---EEKMKLVVKVT-GDHVAVVGENR 668
           LV+++ G    V  ++     R GK  T  K  S   ++ +  +  V   D + +V    
Sbjct: 766 LVITTNGYGKRVPVTQFRLQRRAGKGLTATKFKSKKAKDYVAALRIVNENDELMIVTSRG 825

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI--------CEGLTWIDSAG 716
            ++  +++ I   SR   GVR+Q   +      +             E +  +  +G
Sbjct: 826 IIIRQTVNAISTQSRNATGVRVQRLDEDDSIVAVALVPLSGEESESDEAVDLVSVSG 882


>gi|33865261|ref|NP_896820.1| DNA gyrase subunit A [Synechococcus sp. WH 8102]
 gi|33632430|emb|CAE07242.1| DNA gyrase A subunit [Synechococcus sp. WH 8102]
          Length = 875

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 230/786 (29%), Positives = 393/786 (50%), Gaps = 56/786 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDDRIIQADLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+I
Sbjct: 135 ESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    LALI+NP+++ ++L+  I GPDFPTGG I+  RE I E+Y  GRG   
Sbjct: 195 PPHNLNELINGLLALIENPDLTDQELVRLIPGPDFPTGGQIL-GREGIRETYLGGRGSIT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  
Sbjct: 254 MRGVAAIETIEAPGRPDRDAVIITELPYQTNKAGLIERIAELVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F   M  L     P ++ L  +L+ +L  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTALQSNFSAYMLALV-NGEPILLTLRKMLEVFLDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLT 424
           R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L+
Sbjct: 373 RVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHGLS 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ ++ +
Sbjct: 433 DIQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQDELNQLSD 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SH 536
            ++       RRT   ++    +      +I  E   V+++  G+++ +           
Sbjct: 493 RYTTP-----RRTEILDLGGGLEDI---DLIANERSVVLVTETGYLKRMPVSEFEATSRG 544

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
           +   +    +  +++K+ +  +  D +LL S  G +Y LPA  +       +   +  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I +      ++    LL+++  G       S        G   + +   + ++
Sbjct: 605 PIPREEAITSLIPVSEFNDDMDLLMLTRGGFIKRTRLSAFSNIRSNGLIAINLEEGDALR 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG-ISDVICFKIC 706
            V   V GD V +       + F +    +  + R  +GVR  + ++G  +  +    + 
Sbjct: 665 WVRLAVPGDSVLIGSNAGMTIHFRLSDEELRPLGRTARGVRSMNLREGDGLVSMDVLPVE 724

Query: 707 --------------------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                               +G   + ++     +        L KR G+G    K    
Sbjct: 725 LADRIAQSAEDDEEDDASSGDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTT 784

Query: 747 SGKFLS 752
               + 
Sbjct: 785 DDALVG 790



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 13/143 (9%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--------LLVVSSKGNAFIVEE 628
             ++    G G     ++ +     I  +   D            +LV S+ G    V  
Sbjct: 704 VRSMNLREGDGLVSMDVLPVELADRIAQSAEDDEEDDASSGDGPWVLVASASGLGKRVPV 763

Query: 629 SEIIANTRKG--KTFLKVSS-EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           ++     R G     +K  + ++ +  +  +  G+ V +V E   ++  S D IP+ SR 
Sbjct: 764 TQFRLQKRAGMGLRAMKFRTTDDALVGLRVLGAGEEVLLVSEKGVIVRTSADAIPQQSRA 823

Query: 685 K-GVRLQSYKDGGISDVICFKIC 706
             GVRLQ    G     +     
Sbjct: 824 ATGVRLQRLDKGDRLSEVVLVPP 846


>gi|225677216|ref|ZP_03788209.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590740|gb|EEH11974.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 900

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 255/830 (30%), Positives = 401/830 (48%), Gaps = 91/830 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  +S+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +
Sbjct: 1   MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PLI GQGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +V+  +L  +DED V+FR  Y+  ++EPVV P++FPNLL NG SG+AVGMAT+IP
Sbjct: 121 EARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +A +  +DNPE+++++LLE + GPDFPTGG I+  R  I  ++  GRG   V
Sbjct: 181 SHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +E++ +    IV+ EIPYQV K +LIEKI EL+  KRI  + +IRDES +    V
Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R+ +   ++  +  L+ + + F +N  VL+    P +M L  I+  ++  R+EVL
Sbjct: 300 VIDLRRNAEASFILNQVLGLTPLRSSFSVNTLVLN-NNRPALMSLKEIIAAFVDFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            RR+ FR++    +  I  GL IA L+IDE+I IIR    P                   
Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEIN 418

Query: 420 ----------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                            + LTE Q+ AIL+++L+ L  LE+ ++++EL +++   ++  +
Sbjct: 419 TIIELISDSSSFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            L SG++   +I   ++E+K  F+         +     +          +       + 
Sbjct: 479 FLGSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIK 538

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-- 581
                  R+ +           KE D +      +T   +L  S  G+ Y L    L   
Sbjct: 539 RVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSLLFFSNIGRVYRLKVYKLPLA 598

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRK 637
                G A+  +  L+ ++ I          D    ++  ++ GN      ++       
Sbjct: 599 EPTARGRALVNIFPLSDSETITNIMPLPSENDENQNIVFATAYGNIRRNSLADFHYIPSN 658

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSY-K 693
           GK  +K+   +K+  V      DHV +     K + F +  + +  SR   GVR     K
Sbjct: 659 GKIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVK 718

Query: 694 DGGISDVICFK------------------------------------------------- 704
           +  +  +                                                     
Sbjct: 719 NDSVISMTILNGIGVATETKELYLKVPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLK 778

Query: 705 -ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   +      + +  +     +  RGGVG        R+G  ++S
Sbjct: 779 LAVNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRNGNVVAS 828



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
           +   +L ++  G        E     R G     +     +   +       GD++ ++ 
Sbjct: 782 NEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRNGNVVASFPVEQGDNIMLIT 841

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +  KL+  S+++I    R  +GV L  +K      V+     E 
Sbjct: 842 DKGKLIRISVNEIRIAGRSTQGVTL--FKTESREKVVSVAKIED 883


>gi|194477220|ref|YP_002049399.1| DNA gyrase subunit A [Paulinella chromatophora]
 gi|171192227|gb|ACB43189.1| DNA gyrase subunit A [Paulinella chromatophora]
          Length = 882

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 227/798 (28%), Positives = 382/798 (47%), Gaps = 59/798 (7%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S      +  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL
Sbjct: 4   STGPGESDGRIIQTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGL 63

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  
Sbjct: 64  SSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDSDPP 123

Query: 127 AAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AA RYTE+R+  +A   +L+ ++ + VDF D ++    EP V P++ P+LL NG+SGIAV
Sbjct: 124 AAMRYTESRLQPLATESLLEDIEAETVDFIDNFDGSQQEPTVMPARVPHLLLNGSSGIAV 183

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A LA+I +PEIS   L+  + GPDFPTGG I+  R+ I E+Y  
Sbjct: 184 GMATNIPPHNLGELIDALLAIIADPEISDSALITIVTGPDFPTGGQIL-GRKGIREAYTT 242

Query: 246 GRGGFRVRARWCVE----EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           GRG   +R    +E    +       +++TE+PYQ  K+ LIE+IAEL+  K++  + DI
Sbjct: 243 GRGSVTMRGVASIETIEVQGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLDGISDI 302

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   ++    R   P +++ ++F L+ +++ F  ++  L     P ++ L  +L
Sbjct: 303 RDESDRDGMRIVAELRRDAYPQVVLNNLFKLTPLQSNFSAHLLALVK-GEPVLLTLRQML 361

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMV 418
             +L  R E + RR+ + ++  + R   L GLL+A   +D II +IR           + 
Sbjct: 362 HVFLDFRIETIERRTRYLLRKAEERDHTLLGLLLALDQLDPIINLIRAASDAATARYQLQ 421

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               L+E Q DAIL ++LR L  LE  +I+ E ++L+ +      +L    +    I  E
Sbjct: 422 YFHGLSEIQADAILQMQLRRLTALEADKIRFEHEDLVQKVNNYRDILAHRDRVLELIKEE 481

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-----KEPITVVISNRGWIRSL 533
           ++ +   ++       RRT   ++  + +     A         E   +         + 
Sbjct: 482 LKLLHNRYNSP-----RRTKILDLEGSLEDIDLIANERSVVLLTENGYLKRMPVSEFEAT 536

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
              +   +    +  + +K+ +  +  D +LL S  G +Y LPA  +       +   + 
Sbjct: 537 NRGTRGKAGTKNQGDEGVKLFISCNDHDTLLLFSDRGISYALPAYRVPVSSRSAKGTPVV 596

Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            ++ +   ++I +      +++  +LL++++ G       S        G   + +   +
Sbjct: 597 QILPIPREEEITSLLSVSAFENEVQLLMLTNSGFIKRTRLSAFSNIRSNGLIAINLELGD 656

Query: 649 KMKLVVKV-TGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            ++ V     GD V +       + F I  +++  + R  +GVR  + +D      +   
Sbjct: 657 ALRWVRLALPGDSVLIGSIQGMTIHFRIIDEELRPLGRNARGVRAMNLRDNDSLVSMDVL 716

Query: 705 ICE------------------------------GLTWIDSAGRSYNRSENDLLGWLGKRG 734
             E                              G   + ++     +        L +R 
Sbjct: 717 PAELADQVANSVDSGVEEREELGGGTGSASPAAGPWVLVASASGLGKRVPVNQFRLQRRA 776

Query: 735 GVGSLVPKGFPRSGKFLS 752
           G+G    +   +    + 
Sbjct: 777 GMGLRAMRFRRKGDVLVG 794



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVS-SEEKMKLVVKVTG-DHVAVVGENRK 669
           +LV S+ G    V  ++     R G     ++     + +  +  +   + + +V E   
Sbjct: 753 VLVASASGLGKRVPVNQFRLQRRAGMGLRAMRFRRKGDVLVGLKVLGSREELLLVSEKGV 812

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           ++    D IP+ SR   GVRLQ   DG     I    
Sbjct: 813 IVRMQADLIPQQSRAATGVRLQKLDDGDHLAEIVLIP 849


>gi|170289511|ref|YP_001739749.1| DNA gyrase, A subunit [Thermotoga sp. RQ2]
 gi|170177014|gb|ACB10066.1| DNA gyrase, A subunit [Thermotoga sp. RQ2]
          Length = 804

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 231/751 (30%), Positives = 379/751 (50%), Gaps = 13/751 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +    +   L E YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  
Sbjct: 1   MPEILINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD  VYD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++AE +L+ ++++ V+  D ++    EP V PSK PNL+ NG SGIAVGMAT+IP
Sbjct: 121 EARLTKLAEEMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A + LID+PE ++E+L+++I GPDFPTG  +V +   + + Y  GRG   V
Sbjct: 181 PHNLSETVDALIYLIDHPEATVEELMQFIKGPDFPTGA-VVVNASELKKVYEEGRGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  VE+  R    IV+TEIPY V K+ LIE+IA++        + +IRDES +    +
Sbjct: 240 RGKVHVEDGKR-VKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++ +++  + ++  F + M V+   + P++M L G+++ +L HR EV+
Sbjct: 299 VIEIPKDTSEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ +  +   RR  +++GLL A   I  ++ I+RN       K  ++    +TE Q  
Sbjct: 359 RRRARYEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLMETLEITEEQAK 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE   +++E  +L+ +  ++  +L   ++    +  E   +K+ +   
Sbjct: 419 AILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKEEFLYLKQQYGDP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +               +       +  +     RS K     ++     E D
Sbjct: 479 RRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRSQKRGGKGITVSKLTEDD 538

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            ++  + A  T   L ++  G+AY L             G  I   ++L   + IV    
Sbjct: 539 EVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALAS 598

Query: 608 YD-STCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH--VAV 663
            +     L++V+  G        E    T   G   +K+   +++     V  +   + V
Sbjct: 599 LNGDGNDLVIVTKSGKIKRTALKEFENATSNRGVRAIKIEPGDEIVSARVVNSEKETLIV 658

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNR 721
             +    + F +  +  M R   GV+    + G  +  V      +    +    + + +
Sbjct: 659 ATKMGMAVRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGDEGEILTVTEKGFGK 718

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                L  + +RGG G        ++G  ++
Sbjct: 719 RTPVQLYRIQRRGGTGLRNISDVNKTGYVVA 749



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 8/154 (5%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA--FVYDSTCKLLV 616
             + +++ +  G A   P  ++     +  A    I L    ++V+          ++L 
Sbjct: 652 EKETLIVATKMGMAVRFPVSDVRRMGRNA-AGVQAIKLQPGDEVVSVDVIPPGDEGEILT 710

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLI 672
           V+ KG              R G     +S   K   +  V  V GD  + VV  N  ++ 
Sbjct: 711 VTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVAVRYVRGDEEIVVVTRNGMMIR 770

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           F + +I  + R  KGV+L    D  IS V   K 
Sbjct: 771 FPVSEIGVIGRVTKGVKLIELGDDTISKVAVVKD 804


>gi|28564562|dbj|BAC57595.1| DNA gyraseA [Campylobacter jejuni]
          Length = 844

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 247/786 (31%), Positives = 400/786 (50%), Gaps = 50/786 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SE  V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHI-EKKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +A
Sbjct: 365 RRAIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   ++I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEEIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAV 663
             +D +  L   +  G       SE       G   + +   + +   + V    D + V
Sbjct: 605 TDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDGLVTAIIVQRDEDEIFV 664

Query: 664 -----------------------------------VGENRKLLIFSIDQIPEMSR-GKGV 687
                                              V +    + F + ++ E+ R  +GV
Sbjct: 665 SGGEENLENQEIENLDDENLENEESVSTQGKVLFAVTKKGMCIKFPLAKVREIGRVSRGV 724

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 725 TAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 784

Query: 747 SGKFLS 752
           +   +S
Sbjct: 785 TKDLIS 790


>gi|261368838|ref|ZP_05981721.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176]
 gi|282569107|gb|EFB74642.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176]
          Length = 856

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 227/771 (29%), Positives = 372/771 (48%), Gaps = 28/771 (3%)

Query: 6   ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +  +  +V      V    ++  +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M 
Sbjct: 1   MEENIIMVPGSGTKVIERDVKQEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMH 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G D    ++KSA  VG V+G  HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++D
Sbjct: 61  ERGNDPQHPYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVD 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AAYRYTEARM+++A  +L  +++D +D+   ++E   EP V PS+FPNLL NG+ G
Sbjct: 121 GDPPAAYRYTEARMSKIACEMLTDIEKDTIDWDPNFDETKKEPHVLPSRFPNLLVNGSQG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN++E+     AL+DNP+I +  L+E++ GPDFPTGG I+  R  I  +
Sbjct: 181 IAVGMATNIPPHNLREVVAGMCALMDNPDIDLAGLMEFVKGPDFPTGG-IIMGRSGIRAA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +R R  + E   G + I++TEIPY V K+RLIE IA+L+  KRI  + D+ 
Sbjct: 240 YATGRGKITLRGRAEIVEKKNGRYEILITEIPYMVNKTRLIESIADLVKDKRIEGISDLN 299

Query: 303 DE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE S+     ++    +  +P +++  ++  + ++    + M  L    VP++M L  ++
Sbjct: 300 DESSSRTGMKIVIEIKKDANPQVVLNQLYRYTQLQDTVGVIMLALDD-GVPKIMSLKTVM 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED----KPKPVM 417
           + ++  + EV+ RR++F ++    R  IL+GL  A   +DEIIA IR       + +  +
Sbjct: 359 ERYIDFQMEVIRRRTAFDLKKAQEREHILEGLRKAVDIVDEIIATIRACKGGFAEARQAV 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  F   E Q DAI+ L+L  L  LE  +I+ EL  L         +L++ +     +  
Sbjct: 419 MDNFGFDELQADAIVKLQLGRLAGLEILKIEQELGELREAIADYKDILSNDEHVKRIVKT 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           +++ + + +           +                       +  +     ++     
Sbjct: 479 DLQTLADKYGDERRTSIEAVSGEVDIEDLIPEETCIFTLTHEGYIKRTTLDTYQAQNRGG 538

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID 595
             +  +  K+ D  +      T D +L ++  G+ Y L    +  G    +   I  L+ 
Sbjct: 539 RGVQGMTQKDDDFTEELFVGSTHDYMLFMTDQGRVYRLKGYQVPEGSRTAKGSHIVNLLQ 598

Query: 596 LNHNQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L   + +           +    L +V+ +G       S+     + G   + ++  + +
Sbjct: 599 LQEGEKVTLMLQQSAKADEDNTYLTMVTRQGLIKRTPLSQFRNIRKAGLIAIGLNEGDSL 658

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
                   GD + V   +   + F+      M R G GVR+   ++G            G
Sbjct: 659 VWSHLTGGGDEIIVATHDGAAIHFTESGARAMGRTGHGVRVIRLREGDYVIGAGVCRP-G 717

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV--------PKGFPRSGKFL 751
            T +        R        + KRGG+G            K    +   +
Sbjct: 718 ATVLTITEDGKGRRSRVDDYRITKRGGLGIRNYAKGGVAGIKIVDETDDLI 768



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 4/178 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 L A+   EGDSL  +      D I++ + DG A      +     G       +
Sbjct: 641 NIRKAGLIAIGLNEGDSLVWSHLTGGGDEIIVATHDGAAIHF-TESGARAMGRTGHGVRV 699

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I L     ++ A V      +L ++  G        +     R G      +    +  +
Sbjct: 700 IRLREGDYVIGAGVCRPGATVLTITEDGKGRRSRVDDYRITKRGGLGIRNYAKG-GVAGI 758

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             V   D + ++  N  L+      I   SR G GVR+    +G    ++     +  
Sbjct: 759 KIVDETDDLILISANGILIRLHASDINVQSRYGSGVRVMRLGEGDKVAMVARVDRDNE 816


>gi|304321597|ref|YP_003855240.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503]
 gi|303300499|gb|ADM10098.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503]
          Length = 924

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 245/836 (29%), Positives = 375/836 (44%), Gaps = 99/836 (11%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  +S+   +++ YL YA+S I  RAIPD RDG KPVHRRI+ +M E G       +
Sbjct: 23  EEGIAPISITEEMQKSYLDYAMSVIVSRAIPDARDGLKPVHRRILWSMQEQGYTHDKRHR 82

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VG+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+ID D  AA RYTE
Sbjct: 83  KSANVVGDVIGKYHPHGDTAVYDALVRMAQHFSMRLPLLDGQGNFGSIDNDPPAAMRYTE 142

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM   AE +L  +D+D VDF +TY+ E  EP V P++FPNLL NG  GIAVGMAT+IP 
Sbjct: 143 VRMAAPAEALLADIDKDTVDFHETYDGERQEPGVLPARFPNLLVNGAGGIAVGMATNIPP 202

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +A + LID P +S E+LL  + GPDFPTG  I   +    ++   GRG   +R
Sbjct: 203 HNLGEIIDATVRLIDEPHVSDEELLSIVPGPDFPTGASI-MGQSGARQALLTGRGSVVMR 261

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A   VEEV +  + I+V++IP+QV K+ ++E+IA L+  K++  + D+RDES      V+
Sbjct: 262 ATTAVEEVRKDRFAIIVSDIPFQVNKAAMVERIAGLVREKKLEGIADLRDESDRHGIRVV 321

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  S ++T F  N+  L+    P+ M L  +LK ++  R EV+ 
Sbjct: 322 IELKRDANAEVVLNNLYKQSPLQTSFAYNLLALN-RGRPEQMTLRTVLKSFVDFREEVVT 380

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----------- 422
           RR+   +     R  +L GL I+  NIDE++ +IR    P     +              
Sbjct: 381 RRTKHLLMKARDRAHVLVGLAISVANIDEVVRLIREAPNPAAAREALMGRNWPAKDLASL 440

Query: 423 ------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                             L+E Q  AIL+LRL+ L  L   +I  EL +L  +      +
Sbjct: 441 VALVADPRHSLQEDGSLRLSETQARAILDLRLQRLTALGRDEIGDELQSLADKIADYLQI 500

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L    +    I  E+ +V+E F+             E      A     +       V  
Sbjct: 501 LRDRDRVLTIIKDELADVRERFATPRKTQFIDAIEME-DEDLIAREDMVVTVSHAGYVKR 559

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-- 582
           ++    R+ +      S +  K+ D +      +T   +L  +  G AY L    L    
Sbjct: 560 TSLDTYRAQRRGGKGRSGMAMKDDDFISQLFVGNTHTPLLFFTDRGMAYKLKLWRLPEGG 619

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTR 636
               G+A   L+ L+  + +                 ++  +  GN    + S+     +
Sbjct: 620 PTSRGKAFINLLPLDQGERVTNILPLPDDEAQWADMDIVFATRSGNVRRNKLSDFTNVNK 679

Query: 637 KGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRG-KGVRLQSYK 693
            GK  +K+   + +  V      + + +   N   + F +D +     R   GVR   +K
Sbjct: 680 AGKIAMKLDEGDALVGVGIARESEDILLTTRNGMTIRFPVDAVRVFSGRTSTGVRGIRFK 739

Query: 694 DGG---ISDVICFKI-------------------------CEGLT--------------- 710
                    V+   I                          EG T               
Sbjct: 740 PNDEFGEDGVMSMAILRHLDVSSEEAKAYLKHAAAMRRAAGEGETEGSDAEAEGSEAALS 799

Query: 711 -------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                         + +    Y +  +        RGG G        R+G+ ++S
Sbjct: 800 TERLAAMQAAEQFILTATENGYGKRTSSFEYRTSGRGGQGIAGIVTSARNGRVVAS 855



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTG-DHVAVVG 665
           +   +L  +  G        E   + R G+    +   +   ++     V   D + +V 
Sbjct: 809 AEQFILTATENGYGKRTSSFEYRTSGRGGQGIAGIVTSARNGRVVASFPVEDADEIMLVT 868

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLT 710
           +  +L+   +  I    R  +GV++ + ++   +  V      +   
Sbjct: 869 DGGQLIRTGVADIRVAGRNTQGVKILTTRETERVVSVEHVPEAQNDD 915


>gi|161870257|ref|YP_001599427.1| DNA gyrase subunit A [Neisseria meningitidis 053442]
 gi|161595810|gb|ABX73470.1| DNA gyrase subunit A [Neisseria meningitidis 053442]
          Length = 916

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 238/851 (27%), Positives = 400/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL E+L HRREV+ RR+ FR++       I +G  +A  NID II +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDAIIKLIKESPNAAEAKDK 418

Query: 419 --------------------------------------SRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTWIDSA 715
              +     D++
Sbjct: 893 VAEDESELSDAS 904



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 794 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 853

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 854 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 883


>gi|254431397|ref|ZP_05045100.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001]
 gi|197625850|gb|EDY38409.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001]
          Length = 883

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 239/810 (29%), Positives = 392/810 (48%), Gaps = 74/810 (9%)

Query: 6   ISNSNTLV-EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +++      +  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+
Sbjct: 1   MADPTDPNGDSRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYEL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL     ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL+ G GNFG++DGD
Sbjct: 61  GLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFNMRLPLVDGHGNFGSVDGD 120

Query: 125 SAAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE+R+  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG++GI
Sbjct: 121 PPAAMRYTESRLQALTTDALLEDIEAETVDFADNFDGSQQEPTVMPARIPQLLLNGSTGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  LALI +P++   +L+  I GPDFPTGG I+  R  I E+Y
Sbjct: 181 AVGMATNIPPHNLTELIDGLLALIADPDVEDRQLMAIIPGPDFPTGGQIL-GRRGIRETY 239

Query: 244 RLGRGGFRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             GRG   +R    VE +          I++TE+P+Q  K+ LIE+IAEL+  K++  + 
Sbjct: 240 TTGRGSVTMRGVASVETIEAKGRPDRDAIIITELPFQTNKASLIERIAELVNDKKLDGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES  D   ++    R   P +++ ++F L+ ++  F   M  L     P ++ L  
Sbjct: 300 DIRDESDRDGMRIVIELRRDAYPQVVLNNLFKLTPLQNNFSAYMLALVK-GEPVLLTLRK 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L+ +L  R E + RR+ F ++  + R  IL GLLIA  ++D IIA+IR           
Sbjct: 359 MLEVFLEFRVETIERRTRFLLRKAEERDHILLGLLIALDSLDAIIALIRAAADTASARSE 418

Query: 420 ---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              +F LTE Q DAIL ++LR L  LE  +I+ E ++LLA+      +L   ++ +  I 
Sbjct: 419 LVAQFGLTEIQADAILQMQLRRLTALEADKIRLEHEDLLAKITDYKDILARRERVFGIIT 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-- 534
            E+  ++  +        RRT   ++    +      +I  E   V+++  G+++ +   
Sbjct: 479 DELGAIRNRYLSP-----RRTEILDLEGGLEDI---DLIANERSVVLLTETGYLKRMPVS 530

Query: 535 ------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
                   +   +    +  +++K+ +  +  D +LL S  G  Y +PA  +       +
Sbjct: 531 EFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDNLLLFSDRGVVYAVPAYRVPICSRAAK 590

Query: 589 --AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              I  L+ +   + I +      +     L++++S G       S        G   + 
Sbjct: 591 GTPIVQLLPIPREEQITSLLAVSAFSEEAMLVMLTSGGYIKRTRLSAFSNIRSNGLIAIS 650

Query: 644 VSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDG---- 695
           +   + ++ V     GD V +       + F +  +++  + R  +GVR  + + G    
Sbjct: 651 LEDGDDLRWVRLALPGDSVLIGSLKGMTIHFRLTDEELRPLGRTARGVRAMNLRAGDQLV 710

Query: 696 --------------------------------GISDVICFKICEGLTWIDSAGRSYNRSE 723
                                                    + EG   + ++     +  
Sbjct: 711 SMDVLSAELADRVASSSDSAGLEESEPEELVADEVAAEEVAVSEGPWVLVASAAGLGKRV 770

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGK-FLS 752
                 L KR G+G    K F R G   + 
Sbjct: 771 PVDQFRLQKRAGMGLRAIK-FRRDGDTLVG 799



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVS-SEEKMKLVVKV-TGDHV 661
                   +LV S+ G    V   +     R G     +K     + +  +  +  G+ V
Sbjct: 750 VAVSEGPWVLVASAAGLGKRVPVDQFRLQKRAGMGLRAIKFRRDGDTLVGLKVLGAGEEV 809

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKICEGLTWIDSA 715
            +V E   ++    D IP+ SR   GVRLQ    G  + +V+          +D+A
Sbjct: 810 LLVSERGVIVRTEADAIPQQSRAATGVRLQRLDAGDRLVEVVLVPPAASEDELDAA 865


>gi|281413087|ref|YP_003347166.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10]
 gi|281374190|gb|ADA67752.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10]
          Length = 804

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 231/751 (30%), Positives = 379/751 (50%), Gaps = 13/751 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +    +   L E YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  
Sbjct: 1   MSEILINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD  VYD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++AE +L+ ++++ V+  D ++    EP V PSK PNL+ NG SGIAVGMAT+IP
Sbjct: 121 EARLTKLAEEMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A + LID+PE ++E+L+++I GPDFPTG  +V +   + + Y  GRG   V
Sbjct: 181 PHNLSETVDALIYLIDHPEATVEELMQFIKGPDFPTGA-VVVNASELKKVYEEGRGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  VE+  R    IV+TEIPY V K+ LIE+IA++        + +IRDES +    +
Sbjct: 240 RGKVHVEDGKR-VKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++ +++  + ++  F + M V+   + P++M L G+++ +L HR EV+
Sbjct: 299 VIEIPKDTSEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ +  +   RR  +++GLL A   I  ++ I+RN       K  ++    +TE Q  
Sbjct: 359 RRRARYEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLMETLEITEEQAK 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE   +++E  +L+ +  ++  +L   ++    +  E   +K+ +   
Sbjct: 419 AILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKEEFLYLKQQYGDP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +               +       +  +     RS K     ++     E D
Sbjct: 479 RRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRSQKRGGKGITVSKLTEDD 538

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            ++  + A  T   L ++  G+AY L             G  I   ++L   + IV    
Sbjct: 539 EVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALAS 598

Query: 608 YD-STCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH--VAV 663
            +     L++V+  G        E    T   G   +K+   +++     V  +   + V
Sbjct: 599 LNGDGNDLVIVTKSGKIKRTALKEFENATSNRGVRAIKIEPGDEIVSARVVNSEKETLIV 658

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNR 721
             +    + F +  +  M R   GV+    + G  +  V      +    +    + + +
Sbjct: 659 ATKMGMAVRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGDEGEILTVTEKGFGK 718

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                L  + +RGG G        ++G  ++
Sbjct: 719 RTPVQLYRIQRRGGTGLRNISDVNKTGYVVA 749



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 8/154 (5%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA--FVYDSTCKLLV 616
             + +++ +  G A   P  ++     +  A    I L    ++V+          ++L 
Sbjct: 652 EKETLIVATKMGMAVRFPVSDVRRMGRNA-AGVQAIKLQPGDEVVSVDVIPPGDEGEILT 710

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLI 672
           V+ KG              R G     +S   K   +  V  V GD  + VV  N  ++ 
Sbjct: 711 VTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVAVRYVRGDEEIVVVTRNGMMIR 770

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           F + +I  + R  KGV+L    D  IS V   K 
Sbjct: 771 FPVSEIGVIGRVTKGVKLIELGDDTISKVAVVKD 804


>gi|269954817|ref|YP_003324606.1| DNA gyrase subunit A [Xylanimonas cellulosilytica DSM 15894]
 gi|269303498|gb|ACZ29048.1| DNA gyrase, A subunit [Xylanimonas cellulosilytica DSM 15894]
          Length = 856

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 231/781 (29%), Positives = 382/781 (48%), Gaps = 44/781 (5%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            I     +   +V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + 
Sbjct: 8   GIPELPEVHHGHVEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDG 67

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      F K AR+VG+V+GK HPHGD ++YD++VRL Q +  RYPL++GQGNFG+   D
Sbjct: 68  GYRPDRGFSKCARVVGDVMGKYHPHGDSAIYDAMVRLVQDWSLRYPLVAGQGNFGSPGND 127

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE RM  +A  +++ +D+D VDF+D Y+ E+ EPVV P++FPNLL NG++GIA
Sbjct: 128 PAAAPRYTECRMAPIAMEMVRDIDKDTVDFQDNYDGEEQEPVVLPARFPNLLVNGSAGIA 187

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN++E+ E     + +PE S E+    L++ + GPDFPTG  I+   + I 
Sbjct: 188 VGMATNIPPHNLREVAEGVRWHLAHPEASREELLAALMQRVKGPDFPTGAQIL-GTKGIE 246

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG   +RA   VEE+ +   C+VVTE+PYQV    L  KIA+L+   R+  + D
Sbjct: 247 EAYRTGRGSITMRAVVNVEEI-QNRICLVVTELPYQVNPDNLAAKIADLVNDGRLQGIAD 305

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           IRDE++    + ++    R     +++ +++  + ++  F  NM  L    VP+ + LD 
Sbjct: 306 IRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFGANMLALVD-GVPRTLSLDA 364

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-- 417
            ++ W  H+ EV+ RR+++ +   ++R+ IL+G L A   +D++IA+IR           
Sbjct: 365 FIRHWTTHQMEVIRRRTAYLLADAEKRIHILRGYLKALDVLDDVIALIRRSPDADQARAG 424

Query: 418 -VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            +    + E Q +AILNL+LR L  LE  +I  E   + AE   +  +L   ++Q + + 
Sbjct: 425 LMELLEIDEIQANAILNLQLRRLAALERQRIIDEHAAIEAEITDLQDILAKPERQRSIVG 484

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  + E +        RRT              + +I +E + V I+  G+ +     
Sbjct: 485 EELDGIVEKYGDE-----RRTHILPYDGDMS---MEDLIPEEEVVVTITRGGYAKRTRSD 536

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
                K     +     +E D +       T   +L  +  G+ Y      L  G    +
Sbjct: 537 AYRQQKRGGKGVRGTQLREDDIVDHFFVTTTHHWLLFFTNFGRVYRAKGYELPEGSRDSK 596

Query: 589 --AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              +  ++     + I        YD+   L++ + +G        E  +    G   + 
Sbjct: 597 GQHVANMLAFQPGEHIAQVLDLRDYDAAEYLVLATRRGLVKKTRLQEYNSPRSAGLIAIN 656

Query: 644 VSSE-----EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKD 694
           +  +     +++   + V     + +V    + + F      +  + R   GV    +++
Sbjct: 657 LREDEDGQPDELIGAMLVDSSQDLILVSRKGQSIRFPAADESLRPLGRATSGVTGMKFRE 716

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSE--NDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           G    +    + E             +    +        RGG+G  V       G  + 
Sbjct: 717 GDEV-LTAAVVREDAFLFTVTESGLAKRTELSVDNYRQQGRGGLGIRVANLPEERGDLVG 775

Query: 753 S 753
           +
Sbjct: 776 A 776


>gi|302559660|ref|ZP_07312002.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
 gi|302477278|gb|EFL40371.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
          Length = 865

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 238/779 (30%), Positives = 386/779 (49%), Gaps = 35/779 (4%)

Query: 6   ISNSNTLVEE---------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           +++ NT V            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR
Sbjct: 1   MTDENTPVTPLEDVDAAAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   G
Sbjct: 61  VLYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNG 120

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+   D AAA RYTE +M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL
Sbjct: 121 NFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLL 180

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGII 232
            NG++GIAVGMAT+IP HN++E+   A   ++NPE S E+    L++ I GPDFPTG  +
Sbjct: 181 INGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEELLDALIDRIKGPDFPTGA-L 239

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
           V  R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+  
Sbjct: 240 VVGRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKD 298

Query: 293 KRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            +I  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L    V
Sbjct: 299 GKIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GV 357

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+ + LD  ++ W+AH+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D
Sbjct: 358 PRTLSLDAFIRHWVAHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSD 417

Query: 412 KPKPVMVSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
             +           + E Q +AIL ++LR L  LE  +I  E D L A+  + + +L S 
Sbjct: 418 TVEIARGGLMDLLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQAKISEYNEILASP 477

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +Q   ++ E+  + E F                     A     +       +  +   
Sbjct: 478 VRQRGIVSQELAAIVEKFGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKRTKTD 537

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGH 586
             R+ K     +     KE D +     + T   +L  +  G+ Y + A  L        
Sbjct: 538 DYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRVKAYELPDAGRDAR 597

Query: 587 GEAIQLLIDLNHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ +  L+    ++ I        Y++   L++ +  G        +  +    G   + 
Sbjct: 598 GQHVANLLAFQPDETIAQIRAIRDYEAVPYLVLATKAGLVKKTSLKDYDSPRSGGVIAIN 657

Query: 644 VSS-----EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKD 694
           +       ++++     V + D + ++    + + F+     +  M R   GV+  S+++
Sbjct: 658 LREQEDGTDDELIGAELVSSDDDLLLISRKAQSIRFTATDDTLRPMGRATSGVKGMSFRE 717

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G     +   +  G     +    Y +        +  RGG+G    K     G  + +
Sbjct: 718 GDELLSMNV-VRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 775


>gi|92117309|ref|YP_577038.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14]
 gi|91800203|gb|ABE62578.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14]
          Length = 913

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 263/859 (30%), Positives = 397/859 (46%), Gaps = 122/859 (14%)

Query: 6   ISNSNT------LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           +S++             ++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++
Sbjct: 1   MSDTEDTKSGEPPAPSGIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM E G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG
Sbjct: 61  AMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQGFSMRVPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD AAA RYTE+R+T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG
Sbjct: 121 SVDGDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +A +ALID+P + I+ L+  + GPDFPTGGII+  R+ I
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACVALIDDPALGIDDLINIVPGPDFPTGGIIL-GRQGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y LGRG   +R +  +E   +    I+++EIPYQV K+ ++E+IAEL+  KRI  + 
Sbjct: 240 RSAYHLGRGSIVMRGKVAIEPARKDREAIIISEIPYQVNKATMVERIAELVRDKRIEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  D   V+    R   P++++  ++  + ++T F  NM  L     PQ+M L  
Sbjct: 300 DLRDESDRDGFRVVVELKRDAVPEVVLNQLYRYTPLQTNFGANMVALD-AGRPQLMNLKD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------- 412
           +L  ++A R  V+ RR+ F +     R  IL GL IA  NIDEII +IR           
Sbjct: 359 LLTLFIAFRERVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPATARDT 418

Query: 413 ----------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                  +        L+  Q  AIL+LRL+ L  L   +I  E
Sbjct: 419 LMSRDWPARDVAAMITLIDDPRHRTSPDGTARLSMEQAKAILDLRLQRLTALGREEISEE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           LD L  E      +L S  +    I  E+  VK  F+       R+T   E         
Sbjct: 479 LDKLAIEIADYLDILRSRARVQAIIKTELGAVKAEFATP-----RKTVILEQEGE---VE 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I++E + V +S+ G+++          K      S +  +E D +     A T   
Sbjct: 531 DEDLIQREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVSRLFVASTHTP 590

Query: 563 ILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KL 614
           +L  S+ G+ Y      L        G+A+  ++ L   + I T               +
Sbjct: 591 VLFFSSRGQVYKEKVWRLPMAAPNARGKAMINILPLEQGERITTIMPLPEDESSWANLDV 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  ++ G     + S+ +   R G   +K+   E +  V   T  D V +     + + F
Sbjct: 651 MFATTSGTVRRNKLSDFVDVRRSGIIAMKLGEGEAIVDVQICTERDDVLLTAGGGQCIRF 710

Query: 674 SIDQIPEM-SRGK-GVRLQSYKDGGISDVICF---------------------------- 703
               +     R   GVR  +  +G     +                              
Sbjct: 711 PASDVRVFSGRTSMGVRGIALAEGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGE 770

Query: 704 -------------------KICEGLTW---------IDSAGRSYNRSENDLLGWLGKRGG 735
                               + EG            +    + Y +  +     +  RGG
Sbjct: 771 DIEPEEATPEADEAAHTDLSLPEGRYVEMGAAEQFVLTVTTQGYGKRSSSFEFRVSGRGG 830

Query: 736 VGSLV--PKGFPRSGKFLS 752
            G     P      G  ++
Sbjct: 831 KGIRASDPTKLGEIGHLVA 849



 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDH 660
           +  +   +L V+++G        E   + R GK        K+     +     V   D 
Sbjct: 799 MGAAEQFVLTVTTQGYGKRSSSFEFRVSGRGGKGIRASDPTKLGEIGHLVAGFPVEMSDQ 858

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
           + +V +  +L+   ++ I   SR  KGVR+ +  +G     +     E  
Sbjct: 859 IMLVSDGGQLIRVPVEGIRITSRASKGVRVFTTAEGEHVVSVEHIREENE 908



 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 45/216 (20%), Gaps = 64/216 (29%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE---IIANTRKGKTFLKVSSEEKM 650
           + L   + IV   +      +L+ +  G       S+       T  G   + ++  +++
Sbjct: 678 MKLGEGEAIVDVQICTERDDVLLTAGGGQCIRFPASDVRVFSGRTSMGVRGIALAEGDRV 737

Query: 651 KLV------------------------VKVTGDH-------------------------- 660
             +                           TG+                           
Sbjct: 738 ISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADEAAHTDLSLPEGRYV 797

Query: 661 --------VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD--VICFKICEGL 709
                   V  V         S  +     RG KG+R       G     V  F +    
Sbjct: 798 EMGAAEQFVLTVTTQGYGKRSSSFEFRVSGRGGKGIRASDPTKLGEIGHLVAGFPVEMSD 857

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +              +  R   G  V     
Sbjct: 858 QIMLVSDGGQLIRVPVEGIRITSRASKGVRVFTTAE 893


>gi|284049851|ref|ZP_06380061.1| DNA gyrase subunit A [Arthrospira platensis str. Paraca]
 gi|291569152|dbj|BAI91424.1| DNA gyrase A subunit [Arthrospira platensis NIES-39]
          Length = 884

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 241/794 (30%), Positives = 372/794 (46%), Gaps = 63/794 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +    LR  +++ YL YA+S I  RA+PD RDGFKPVHRRI++AM+E+GL     F
Sbjct: 4   SESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYT 123

Query: 133 EARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E R+  +  E +L+ +D D VDF D ++    EP+V P++ P LL NG+SGIAVGMAT+I
Sbjct: 124 ECRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A+I NPEI+  +L+ YI GPDFPTG  I+  R  I E+Y  GRG   
Sbjct: 184 PPHNLNELVDGLVAVIHNPEITDIELMRYIPGPDFPTGAKIL-GRSGIREAYTTGRGSIT 242

Query: 252 VRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          I++TE+PYQ  K+ LIEKIAE++  KR+  + DIRDES  
Sbjct: 243 MRGVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDR 302

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    R   P +++ +++  + ++  F  NM  L     P+++ L   L  +L  
Sbjct: 303 EGMRIVVELRRDAYPRVVLNNLYKQTPLQANFGANMLALV-NGKPELLTLKRYLHVFLDF 361

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLT 424
           R   + RR+ +  +  + R  +L+GLLIA  N+D IIA+IR+             RF L+
Sbjct: 362 RIHTIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIERFGLS 421

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I  E   LL +   ++ +LN  ++    +  E  ++KE
Sbjct: 422 EPQADAILQMQLRRLTALEAQKIDQEHQELLEKIADLNDILNRRERILEIVEQEAIQIKE 481

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
                                  A  +  ++  E   +         +    +   S   
Sbjct: 482 RHGTPRRTEIELEESELEDTDLIANEKAIILLTEQGYIKRMPVNTFEAQNRATRGKSGTK 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KE D +K  L     D IL  +  G AY L A  +   S    G  I  ++ +  ++ I
Sbjct: 542 MKEDDGVKHFLSCRDHDSILFFTERGVAYCLKAYQIPIGSRIARGVPIVQMLPIPRDEKI 601

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-G 658
            +      + +   L++++  G       S        G   + ++  ++++ V      
Sbjct: 602 TSLVAVGEFTNDEYLVMLTKGGYIKKTALSAFSNIRSNGLIAISLNEGDELRWVRSARVD 661

Query: 659 DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGG------------------- 696
           D + +       + F  D   +  + R  +GV+    K                      
Sbjct: 662 DSIIIGSRLGMAIHFHTDDKQLRPLGRATRGVKSMKLKPNDELIGMDILPSFIVATIPQL 721

Query: 697 -------------------------ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
                                              +G++ +    R Y +        L 
Sbjct: 722 GGEEPEIEEEENTTAVEDVEDMDSSEELATTEVEPDGVSILVITTRGYGKRVPVSQFRLQ 781

Query: 732 KRGGVGSLVPKGFP 745
            R G G +  K  P
Sbjct: 782 NRAGKGIIATKFKP 795



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEK 649
           D++ ++++ T  V      +LV++++G    V  S+     R GK  +        S + 
Sbjct: 742 DMDSSEELATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKGIIATKFKPHLSGDC 801

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  +  V   D + ++     ++   I  I   SR   GVR+Q          +      
Sbjct: 802 VVALQVVHNTDELMLITSRGIIIRQVISAISRQSRNATGVRVQRLDKEDAIAAVALVPLS 861

Query: 708 GL 709
           G 
Sbjct: 862 GE 863


>gi|90419651|ref|ZP_01227561.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336588|gb|EAS50329.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 947

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 255/842 (30%), Positives = 401/842 (47%), Gaps = 113/842 (13%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D+I+         + ++S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MAEDDITTPPERPT-GIDSISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  MGL F   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+
Sbjct: 60  MHGMGLTFNRPYRKSAGVVGEVMGKYHPHGDSSIYDALVRMAQDWSLRAPLIEGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  AA RYTE R+ +V++ +L  +D++ V+F+D Y+  + EPVV P++FPNLL NG+
Sbjct: 120 IDGDPPAAMRYTETRLYKVSDALLADIDKETVNFQDNYDGREQEPVVLPARFPNLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ EI +  +A+IDNP I++E+L+ +I GPDFPTG I++  R  I+
Sbjct: 180 GGIAVGMATNIPPHNLGEIVDGCVAMIDNPAITLEELMGFIPGPDFPTGAIVL-GRAGIL 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +R +  VE +      IV+TE+P+QV KS +IEK+A+L+  KRI  + D
Sbjct: 239 SAYSTGRGSILMRGKAHVEPMRNDREAIVITEVPFQVNKSTMIEKMADLVRDKRIEGISD 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  D   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ M L  +
Sbjct: 299 IRDESDRDGYRVVVELKRDASSDVILNQLYRFTPLQTTFGANMVALN-GGRPEQMTLPDM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           L  +++ R EV+ RR+ + ++    R  +L GL IA  NIDE+I +IR    P       
Sbjct: 358 LSAFISFREEVVNRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQL 417

Query: 420 ----------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L+E Q  AIL+LRL+ L  L   +I  EL
Sbjct: 418 MTRAWEAKDVAPLIRLIDDPRHRITEEGTYRLSEAQARAILDLRLQRLTALGRDEIGDEL 477

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + +  E  +   +L+S  +    I  E+  V++ F+       RRT   E          
Sbjct: 478 NKIGEEIREYLEILSSRVRVREIIKEELIAVRDEFATP-----RRTELSE---GAADMDD 529

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---------FKEGDSLKIALHAHTTDR 562
           + +I +E + V +S+ G+I+ +   +                  + DS+     A+T   
Sbjct: 530 EDLIPREDMVVTVSHGGYIKRVPLATYRSQRRGGKGRAGMSLKNDEDSVTRLFVANTHTP 589

Query: 563 ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDST------CKL 614
           +L  S+ G  Y      L   S +  G+A+  ++ L   + I +     S         +
Sbjct: 590 VLFFSSRGIVYKEKVWRLPLASPQSRGKALINMLPLEKGERITSILPLPSDPDAAAELNV 649

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKV-TGDHVAVVGENRKLLI 672
           +  +++G     + S+     R GK  +K+    +++  V      D V +   + + + 
Sbjct: 650 MFATTRGTVRRNKLSDFTQVNRNGKIAMKLDEDGDEILAVATCSEDDDVLLTAASGQCIR 709

Query: 673 FSIDQIPEM-SRGK-GVRLQSYKDGGISDVICF--------------------------- 703
           F    +     R   GVR  S  +G     +                             
Sbjct: 710 FQATDVRVFAGRNSVGVRGISLGEGDRVISMAILRHVDATPAERSSYLKMRRAVEGASDG 769

Query: 704 -------------------------KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
                                            +  +   Y +  +     +  RGG G 
Sbjct: 770 DLTAEPTVEEEGAGDVAIDQERYAYLSAAEEMILTVSEFGYGKRSSSYEFRVIGRGGKGI 829

Query: 739 LV 740
             
Sbjct: 830 RA 831



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 7/113 (6%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVVKVT-G 658
           A++  +   +L VS  G        E     R GK              ++     V  G
Sbjct: 793 AYLSAAEEMILTVSEFGYGKRSSSYEFRVIGRGGKGIRATDTSRASEIGQLMAGFPVESG 852

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT 710
           D + +V +  +L+   ++ I    R  +GV +    DG     +     +G  
Sbjct: 853 DQILLVTDRGQLIRVPVEGIRTAGRATRGVTIFKTADGERVVSVERIPDQGAD 905



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/207 (10%), Positives = 46/207 (22%), Gaps = 60/207 (28%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE---IIANTRKGKTFLKVSSEEKMKLV 653
               +I+          +L+ ++ G     + ++          G   + +   +++  +
Sbjct: 681 EDGDEILAVATCSEDDDVLLTAASGQCIRFQATDVRVFAGRNSVGVRGISLGEGDRVISM 740

Query: 654 VKV------------------------TGD-------------HVAV------------- 663
             +                         GD              VA+             
Sbjct: 741 AILRHVDATPAERSSYLKMRRAVEGASDGDLTAEPTVEEEGAGDVAIDQERYAYLSAAEE 800

Query: 664 ----VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD--VICFKICEGLTWIDSAG 716
               V E       S  +   + RG KG+R             +  F +  G   +    
Sbjct: 801 MILTVSEFGYGKRSSSYEFRVIGRGGKGIRATDTSRASEIGQLMAGFPVESGDQILLVTD 860

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKG 743
           R               R   G  + K 
Sbjct: 861 RGQLIRVPVEGIRTAGRATRGVTIFKT 887



 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 29/118 (24%), Gaps = 4/118 (3%)

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            E     R   +      +++  +      D V  V     +    +       RG KG 
Sbjct: 510 DEFATPRRTELSEGAADMDDEDLIPR---EDMVVTVSHGGYIKRVPLATYRSQRRGGKGR 566

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              S K+   S    F        +  + R     E      L      G  +    P
Sbjct: 567 AGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLASPQSRGKALINMLP 624


>gi|302520523|ref|ZP_07272865.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
 gi|302429418|gb|EFL01234.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
          Length = 874

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 240/768 (31%), Positives = 386/768 (50%), Gaps = 42/768 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 30  RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 89

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +
Sbjct: 90  ARVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECK 149

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 150 MAPLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHN 209

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   + +PE S E+    L+E I GPDFPTG  +V  R+ I E+YR GRG   
Sbjct: 210 LREVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGA-LVVGRKGIEEAYRTGRGSIP 268

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RDE S+   +
Sbjct: 269 MRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 327

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ ++F  +D++T F  NM  L    VP+ + LD  ++ W+ H+ E
Sbjct: 328 RLVVVLKRDAVAKVVLNNLFKHTDLQTNFSANMLALVD-GVPRTLSLDAFIRHWVTHQIE 386

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D  +           + E Q
Sbjct: 387 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLMGLLEIDEIQ 446

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  ++  E D L    ++  ++L S ++Q   +  E+ ++ + F 
Sbjct: 447 ANAILEMQLRRLAALERQKLVQEHDELQRRIDEYKAILASPERQRQIVHDELGQIVDKFG 506

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+              + +I +E I V IS  G+++          K     
Sbjct: 507 D-----DRRSQLVPFDGDMS---MEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 558

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           +     KE D +       T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 559 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 618

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        Y++   L++ +  G        +  +    G   + +       +++
Sbjct: 619 PDESIAQILAIKDYEAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDE 678

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           +     V+  D + ++    + + F+     +  M R   GV+  S++DG     +   +
Sbjct: 679 LIGAELVSADDDLLLISRKAQSIRFTATDDTLRPMGRATSGVKGMSFRDGDELLSMNV-V 737

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             G     +    Y +        +  RGG+G    K     G  + +
Sbjct: 738 RTGTFVFTATDGGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 785



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 5/135 (3%)

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           + L   G   +    +      ++++  V  +   +   +  G A      E     R G
Sbjct: 708 DTLRPMGRATSGVKGMSFRDGDELLSMNVVRTGTFVFTATDGGYAKRSPVDEYRVQGRGG 767

Query: 639 ---KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
              K    V     +   + V   D +  +     ++   +++I +  R   GV+L +  
Sbjct: 768 LGIKAAKIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQTGRDTMGVQLINLG 827

Query: 694 DGGISDVICFKICEG 708
                  +      G
Sbjct: 828 KRDAVVAVARNAEAG 842


>gi|318057388|ref|ZP_07976111.1| DNA gyrase subunit A [Streptomyces sp. SA3_actG]
 gi|318079450|ref|ZP_07986782.1| DNA gyrase subunit A [Streptomyces sp. SA3_actF]
          Length = 874

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 240/768 (31%), Positives = 386/768 (50%), Gaps = 42/768 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 30  RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 89

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +
Sbjct: 90  ARVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECK 149

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 150 MAPLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHN 209

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   + +PE S E+    L+E I GPDFPTG  +V  R+ I E+YR GRG   
Sbjct: 210 LREVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGA-LVVGRKGIEEAYRTGRGSIP 268

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RDE S+   +
Sbjct: 269 MRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 327

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ ++F  +D++T F  NM  L    VP+ + LD  ++ W+ H+ E
Sbjct: 328 RLVVVLKRDAVAKVVLNNLFKHTDLQTNFSANMLALVD-GVPRTLSLDAFIRHWVTHQIE 386

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D  +           + E Q
Sbjct: 387 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLMGLLEIDEIQ 446

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  ++  E D L    ++  ++L S ++Q   +  E+ ++ + F 
Sbjct: 447 ANAILEMQLRRLAALERQKLVQEHDELQRRIDEYKAILASPERQRQIVHDELGQIVDKFG 506

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+              + +I +E I V IS  G+++          K     
Sbjct: 507 D-----DRRSQLVPFDGDMS---MEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 558

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           +     KE D +       T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 559 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 618

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        Y++   L++ +  G        +  +    G   + +       +++
Sbjct: 619 PDESIAQILAIKDYEAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDE 678

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           +     V+  D + ++    + + F+     +  M R   GV+  S++DG     +   +
Sbjct: 679 LIGAELVSADDDLLLISRKAQSIRFTATDDTLRPMGRATSGVKGMSFRDGDELLSMNV-V 737

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             G     +    Y +        +  RGG+G    K     G  + +
Sbjct: 738 RTGTFVFTATDGGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 785



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 5/135 (3%)

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           + L   G   +    +      ++++  V  +   +   +  G A      E     R G
Sbjct: 708 DTLRPMGRATSGVKGMSFRDGDELLSMNVVRTGTFVFTATDGGYAKRSPVDEYRVQGRGG 767

Query: 639 ---KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
              K    V     +   + V   D +  +     ++   +++I +  R   GV+L +  
Sbjct: 768 LGIKAAKIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQTGRDTMGVQLINLG 827

Query: 694 DGGISDVICFKICEG 708
                  +      G
Sbjct: 828 KRDAVVAVARNAEAG 842


>gi|240137549|ref|YP_002962020.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens AM1]
 gi|240007517|gb|ACS38743.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens AM1]
          Length = 748

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 403/736 (54%), Positives = 532/736 (72%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M  + LD  +
Sbjct: 7   PPPSDGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTS 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           AFKK A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYR
Sbjct: 67  AFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+T+VA L+L G+DED VDFR +YN E  EP+V P+ FPNLLANG+ GIAVGMATS
Sbjct: 127 YTEARLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATS 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+C+AAL LI N E + E+L  ++ GPDFPTGGI+++S ESI E+YR GRGGF
Sbjct: 187 IPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGF 246

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RVRARW  E++GRG+W IVVTEIPY V K+RLIEK+A+L+  K++PLL D+RDESAEDVR
Sbjct: 247 RVRARWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVR 306

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL P++RS+DP +LMES+F LS++E+R PLN+NVL  G VP+V+ L   L+EW+ HRR 
Sbjct: 307 VVLEPRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECLREWVDHRRV 366

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RRSS+R+  I+RR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +A
Sbjct: 367 VLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANA 426

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+ RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I  +IR VK+ F   T
Sbjct: 427 ILDTRLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPET 486

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            LGRRRTT              AM+E+EPITV++S +GWIR+LK H  DLS + FK  D+
Sbjct: 487 KLGRRRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVADLSGVTFKGDDT 546

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           LK+A  + TT +ILLL+++GK +T+ A  L  GRG G+ ++L++DL+   +IV A  Y  
Sbjct: 547 LKVAFLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKP 606

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
             KLLV  S G  FI     ++ANTRKGK  L +    +  L+V   GDHVAV   ++ +
Sbjct: 607 ESKLLVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLM 666

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L+F   ++ E+ RGKGVRLQ  +   ++D   F + EGL W D +G++   +   L  W+
Sbjct: 667 LVFPASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWM 726

Query: 731 GKRGGVGSLVPKGFPR 746
           G R   G+L+ + FP+
Sbjct: 727 GHRSDAGTLMTRSFPK 742


>gi|119961287|ref|YP_945840.1| DNA gyrase subunit A [Arthrobacter aurescens TC1]
 gi|119948146|gb|ABM07057.1| DNA gyrase, A subunit [Arthrobacter aurescens TC1]
          Length = 889

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 231/770 (30%), Positives = 388/770 (50%), Gaps = 36/770 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              ++ + V+ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 20  EGDVLTDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRP 79

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             +F K AR+VG+V+G  HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+   D AAA
Sbjct: 80  DRSFNKCARVVGDVMGTYHPHGDMAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAA 139

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M Q+A  +++ +DE+ VDF+D Y+ ++ EP + P++FPNLL NG+SGIAVGMA
Sbjct: 140 PRYTETKMAQLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGIAVGMA 199

Query: 189 TSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           T+IP HN++E+ E     +DNP    E  +E LL  I GPDFPTG  I+   + I ++YR
Sbjct: 200 TNIPPHNLREVAEGVQWALDNPTATREELLEALLLRIKGPDFPTGATIL-GHKGIEDAYR 258

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA   VEE+ +G  C+VVTE+PYQ     L  KIAEL+   +I  + D+RDE
Sbjct: 259 TGRGSITMRAVVNVEEL-QGRTCLVVTELPYQANPDNLAIKIAELVKDGKIQGIADLRDE 317

Query: 305 SA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++    + ++    R     +++ +++  + ++  F  NM  +    VP+ + LD  ++ 
Sbjct: 318 TSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFSANMLAIVD-GVPRTLSLDAFIRH 376

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           W+AH+ +V+ RR+ +R++  +    IL+ LL A   +DE+IA+IR  +     +  ++  
Sbjct: 377 WVAHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAAREGLMEL 436

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q  AIL+++LR L  LE  +I+     L A  ++ +++L S ++Q   I+ E+ 
Sbjct: 437 LEIDELQARAILDMQLRRLAALERQKIQDRHSELEAMIQEYNAILASEERQRQIISEELA 496

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-- 538
           E+            RRT        D     + +I +E + V I+  G+++  +S +   
Sbjct: 497 EIVAKHGD-----DRRTHIL--MGFDGDMSMEDLIPEEEMVVTITRGGYVKRTRSDNYRS 549

Query: 539 ------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AI 590
                  +     +  D ++      T   +L  +  G+ Y   A  L       +   +
Sbjct: 550 QQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELAEAGRDAKGQHV 609

Query: 591 QLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+    ++ I              L++ +  G        +   N   G   + +  E
Sbjct: 610 ANLLAFQPDEHIAQVLDLRDYQQAPYLVLATKNGLVKKTRLEDYDTNRTAGVIAINLRDE 669

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICF 703
           +++     V+  D + +V    + + F+     +  M R   GV    +++         
Sbjct: 670 DELVSAQLVSETDDLLLVSRKGQSIRFTATDDALRPMGRATSGVTGMKFREDDELLAADV 729

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +G          Y +        L  RGG+G  V K     G  + +
Sbjct: 730 -VQDGSFVFIVTEGGYAKRTAVDEYRLQGRGGLGIKVAKLAEDRGDLVGA 778



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 12/223 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIA 554
           +        L     ++ P  V+ +  G ++  +    D +        + ++ D L  A
Sbjct: 616 QPDEHIAQVLDLRDYQQAPYLVLATKNGLVKKTRLEDYDTNRTAGVIAINLRDEDELVSA 675

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                TD +LL+S  G++    A +      G   +    +    + +++ A V      
Sbjct: 676 QLVSETDDLLLVSRKGQSIRFTATDDALRPMGRATSGVTGMKFREDDELLAADVVQDGSF 735

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE--EKMKLVVKVTGDHVAVVGENRK 669
           + +V+  G A      E     R G      K++ +  + +  ++    D V VV E  K
Sbjct: 736 VFIVTEGGYAKRTAVDEYRLQGRGGLGIKVAKLAEDRGDLVGALIVQEEDEVLVVMEGGK 795

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           ++  ++  +P   R   GV             +      GL  
Sbjct: 796 VVRSAVTGVPAKGRDTMGVIFAKPDKNDRIIEVARNSERGLEV 838


>gi|256389239|ref|YP_003110803.1| DNA gyrase subunit A [Catenulispora acidiphila DSM 44928]
 gi|256355465|gb|ACU68962.1| DNA gyrase, A subunit [Catenulispora acidiphila DSM 44928]
          Length = 875

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 234/770 (30%), Positives = 384/770 (49%), Gaps = 37/770 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T   + +  V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 2   DETPQGDRIDPVDLQTEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + K AR+VGEV+G  HPHGD  +YD+LVRLAQP+  R  L+ G GNFG+   D AAA
Sbjct: 62  EKGYYKCARVVGEVMGIYHPHGDSPIYDTLVRLAQPWSLRMVLVDGNGNFGSPGNDPAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +++ +DED VDFR  Y+   SEPVV P++FPNLL NG++GIAVGMA
Sbjct: 122 MRYTECKMAPLAMEMVRDIDEDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYR 244
           T+IPSHN++E+ +     + NPE + E+    L+E I GPDFPTG  ++  R  I ++YR
Sbjct: 182 TNIPSHNLREVNDGVQWFLQNPEATNEELLEALIERIKGPDFPTGA-LIVGRRGIEDAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA    EE+  G  C+VVTE+PYQV    L  KIAEL+   ++  + D+RDE
Sbjct: 241 TGRGSITMRAVVNTEEIN-GRMCLVVTELPYQVNPDNLALKIAELVKDGKVAGIADVRDE 299

Query: 305 -SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            S+   + ++    R     +++ +++  + ++  F  NM  L    VP+ + LD  ++ 
Sbjct: 300 SSSRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDSFGANMLALVDD-VPRTLSLDAFIRH 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           W+ H+ +V+ RR+ FR++    R  IL GLL A   IDE++A+IR               
Sbjct: 359 WVTHQIDVIVRRTRFRLRKAQERAHILVGLLKALDAIDEVVALIRRSPTVDEARSGLIEL 418

Query: 423 --LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q +AIL ++LR L  LE  +I++E + L+A+     ++L S ++Q   ++ E++
Sbjct: 419 LTIDEIQANAILEMQLRRLAALERQRIEAEHNELMAKIADYTAILESPERQRRIVSEELQ 478

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
            + + +        RR+              + +I +E + V I+  G+ R         
Sbjct: 479 AISDKYGD-----DRRSQLVPYEGDMS---IEDLIPEEDVVVTITRGGYTRRTRTDLYRS 530

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI 590
            K     +     K+ D +       T   +L  +  G+ Y   A  L        G+ +
Sbjct: 531 QKRGGKGVKGAQLKQDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAHELPDTARDARGQHV 590

Query: 591 QLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+    ++ I        Y+ T  L++ +  G        +  +    G   + +  +
Sbjct: 591 ANLLAFLPDEKIAQVLDLRDYEQTPYLVLATKNGLIKKTPLKDYDSPRSAGVIAINLRED 650

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICF 703
           +++     V+  D + +V +  + L F+     +  M R   GV    +++      +  
Sbjct: 651 DELIAAELVSPEDDLLLVSKQAQGLRFTATDEALRPMGRATSGVIGMRFREDDELLSMDV 710

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +      +    Y +     +  L  RGG+G +  K     G  + +
Sbjct: 711 VRPDTF-LFTATSGGYGKRTAVEMFPLRGRGGLGVIAAKTVDERGGLVGA 759



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 67/211 (31%), Gaps = 12/211 (5%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRIL 564
                E+ P  V+ +  G I+              + A++ +E D L  A      D +L
Sbjct: 607 DLRDYEQTPYLVLATKNGLIKKTPLKDYDSPRSAGVIAINLREDDELIAAELVSPEDDLL 666

Query: 565 LLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           L+S   +     A +      G   +  + +    + ++++  V      L   +S G  
Sbjct: 667 LVSKQAQGLRFTATDEALRPMGRATSGVIGMRFREDDELLSMDVVRPDTFLFTATSGGYG 726

Query: 624 FIVEESEIIANTRKGKTFL---KVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIP 679
                       R G   +    V     +     V  GD V  +  +  ++   + ++ 
Sbjct: 727 KRTAVEMFPLRGRGGLGVIAAKTVDERGGLVGAAVVDEGDEVMAITLSGGVIRTRVSEVR 786

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             SR   GVR+ +   G     I      G 
Sbjct: 787 PTSRDTMGVRVINLGKGDTVLAIARNGDPGE 817


>gi|194098847|ref|YP_002001910.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945]
 gi|193934137|gb|ACF29961.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945]
          Length = 916

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 238/851 (27%), Positives = 400/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKN-GVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTW 711
              +    
Sbjct: 893 VAEDESEL 900



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
                +  +I    R   G   + +   E +  + +V  D 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897


>gi|190571348|ref|YP_001975706.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018744|ref|ZP_03334552.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357620|emb|CAQ55061.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995695|gb|EEB56335.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 900

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 257/830 (30%), Positives = 397/830 (47%), Gaps = 91/830 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  VS+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +
Sbjct: 1   MQDNIVPVSIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PLI GQGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDMAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +V+  +L  +DED VDFR  Y+  ++EPVV P++FPNLL NG SG+AVGMAT+IP
Sbjct: 121 EARLHRVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +A +  IDNPE+++++LLE + GPDFPTGG+I+  R  I  ++  GRG   V
Sbjct: 181 SHNLGEIIDACMLYIDNPEVTLDELLEVMPGPDFPTGGMIL-GRSGIRSAFATGRGSIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +E++ +    IV+ EIPYQV K +LIEKI EL+  KRI  + +IRDES +    V
Sbjct: 240 QGKTHIEDLPQDRQAIVINEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R+ +   ++  I  L+ + + F +N  VL+    P +M L  I+  ++  R+EVL
Sbjct: 300 VIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLN-NNRPALMSLKEIIAAFVDFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            RR+ FR++    +  I  GL IA L+I E+I IIR    P                   
Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIGEVIKIIRGAKDPAEASRELLNKEWKTSAEIN 418

Query: 420 ----------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                            + LTE Q  AIL+++L+ L  LE+ ++++EL +++   ++  +
Sbjct: 419 TIIGLISDSMSFLKDGVYRLTELQTKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            L SG++   +I   ++E+K  F+         +     +          +       + 
Sbjct: 479 FLGSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDMVVTVTMNGYIK 538

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-- 581
                  R+             KE D +      +T   +L  S  G+ Y L    L   
Sbjct: 539 RVKLSHYRTQHRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNTGRVYRLKVYKLPLA 598

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRK 637
                G A+  +  L+  + I          D    ++ V++ GN      ++       
Sbjct: 599 EPTARGRALVNIFPLSDGETITNIMPLPSENDENQNIVFVTAHGNIRRNSLADFHYIPSN 658

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSYKD 694
           GK  +K+   +++  V   +  DHV +     K + F +  + +  SR   GVR      
Sbjct: 659 GKIAIKLDEGDRLISVKVCSEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLAK 718

Query: 695 GGISDVICFKIC------------------------------------------------ 706
                 +                                                     
Sbjct: 719 NDSVISMTILNGIGVATETKELYLKVPLAKRLGTAINNFIDSKLEKTLNDLGIDNKLFLK 778

Query: 707 ---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   +      + +  +     +  RGGVG        R+G  ++S
Sbjct: 779 LAMNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTDRNGNVVAS 828



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVG 665
           +   +L ++  G        E     R G     + + ++   +     V  GD++ ++ 
Sbjct: 782 NEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTDRNGNVVASFPVEQGDNIMLIT 841

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +  KL+  S++ I    R  +GV L  +K      V+     E 
Sbjct: 842 DKGKLIRISVNDIRIAGRSTQGVTL--FKTESREKVVSVAKIED 883


>gi|148549990|ref|YP_001270092.1| DNA topoisomerase IV subunit A [Pseudomonas putida F1]
 gi|148514048|gb|ABQ80908.1| DNA topoisomerase IV subunit A [Pseudomonas putida F1]
          Length = 752

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 280/757 (36%), Positives = 438/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  V +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +IE+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  IL 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTILV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR E+ PK  ++ RF 
Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQALIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    +L+ + G++Y+L A +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     +V S  G  F+V+  ++ A  + GK  L + +  K+     V     D
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F +  +P++ +GKG ++       ++        +      G   + 
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAVIPEGGTLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+ +   +DL  + G+RG  GS +P+GF R    
Sbjct: 710 AGKRTLSLKADDLEHYKGERGRRGSKLPRGFQRVDGL 746


>gi|325283050|ref|YP_004255591.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP]
 gi|324314859|gb|ADY25974.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP]
          Length = 808

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 218/749 (29%), Positives = 369/749 (49%), Gaps = 17/749 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V +   ++  ++ YA++ I +RA+PD+RDG KPV RRI++AM   GL       KS
Sbjct: 3   GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMMLEGLYANHKHAKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+ K HPHGD S+YD++VRL Q +  RYP++  QGNFG+IDGD  AA RYTEAR
Sbjct: 63  ASVVGEVMKKYHPHGDSSIYDAMVRLGQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT++AE +L  ++++ +  +  Y+E   EP V P+  PNLL NG SGIAVGMAT+IP HN
Sbjct: 123 MTRLAEELLADLEKETIVMKPNYDETTEEPSVLPAAVPNLLINGASGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EIC   LALID P +++  ++E++ GPDFPTGG I  S++ I ++Y  G    +VR +
Sbjct: 183 LTEICNGLLALIDQPNMTLLDMMEHVQGPDFPTGGRI--SKQGIQDAYTTGHASLKVRGK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-RIVLF 314
             + E       I+++EIPYQV K+ LI+ I+ +  A +IP +  +RDES       ++ 
Sbjct: 241 ARI-EEKNNRSQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVI 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P L++  ++  + +++ F +    +     P+V+PL   ++ +L HRR+V+ R
Sbjct: 300 ELKRGAIPTLVLNQLYKYTQLQSTFTVINLSIV-NGEPRVLPLIDTMRYFLDHRRDVVTR 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+ A  +IDE+IA+IR  +         ++RF L+E Q  AI
Sbjct: 359 RTQYELRKAEERAHILEGLIKALGHIDEVIALIRGSNTGAEARDALMARFELSEPQAQAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++ SE D L     K+ ++L   K  W +I  EIRE+++ +     
Sbjct: 419 LDMRLQRLVGLEREKLMSEFDELQTLIGKLRAILGDEKLLWREIKKEIREIRDRYGDERR 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                           A     +   E   +  +     R+             +E D  
Sbjct: 479 STISALEEDISKEDLIAVEDMVITMTEAGYLKRTTLDAYRAQSRGGRGSRGGKLREEDVN 538

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL------NHNQDIVTA 605
                  T D +L  +  G+ +     +L       +   +   L       +   + + 
Sbjct: 539 TRVFVGSTHDYMLFFTDQGRLFHEKIYDLPEAARDAKGSHIRNLLPSLRDDENIASVQSI 598

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVV 664
             ++     +  +  G       ++    T  G   + +  ++++  V  V  G  + + 
Sbjct: 599 RGFEEEGSFVFATKNGMVKRTLITDYGNITSAGLIAINLQEDDELISVGIVKNGSDIVLA 658

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRSYNRS 722
               K + F+ D++ +  R  +GV     K       +     +     +  +     + 
Sbjct: 659 TRGGKAMRFAADEVRDTGRATQGVIGIRLKGDDRVVSMALVPADTESELLAISEHGLGKR 718

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                     RGG G +      ++G+ +
Sbjct: 719 TPVSDYPSKGRGGQGVITLDVTEKTGRLV 747



 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 2/113 (1%)

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
              + A T   +L +S  G     P  +  S    G+ +  L        +VT    D  
Sbjct: 696 MALVPADTESELLAISEHGLGKRTPVSDYPSKGRGGQGVITLDVTEKTGRLVTLARVDGG 755

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
            +L+V++  G        E+    R   G   + +S ++++     +  +   
Sbjct: 756 EELMVLTQGGLVIRTRVEEVRVTGRNAQGVKVINLSDKDRVISAFPIRKEDEL 808


>gi|239942664|ref|ZP_04694601.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
 gi|239989123|ref|ZP_04709787.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 11379]
 gi|291446125|ref|ZP_06585515.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
 gi|291349072|gb|EFE75976.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
          Length = 880

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 238/786 (30%), Positives = 392/786 (49%), Gaps = 37/786 (4%)

Query: 1   MGVDNISNSN---TLVEE--------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDG 49
           M  +N   +    TL EE         V+ V L   ++  YL YA+S I  RA+PD+RDG
Sbjct: 1   MADENTPETPESVTLEEEVTVPGVGMRVEPVQLETEMQRSYLDYAMSVIVSRALPDVRDG 60

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPVHRR+++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R 
Sbjct: 61  LKPVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRM 120

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           PL+   GNFG+   D AAA RYTE +M  ++  +++ +DE+ VDF+D Y+  + EP V P
Sbjct: 121 PLVDSNGNFGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLP 180

Query: 170 SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPD 225
           ++FPNLL NG++GIAVGMAT+IP HN++E+   A   +++PE S E+L +     I GPD
Sbjct: 181 ARFPNLLVNGSAGIAVGMATNIPPHNLREVAAGAQWYLEHPEASHEELQDALIERIKGPD 240

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK 285
           FPTG  +V  R+ I E+YR GRG   +RA   VEE+ +G  C+VVTE+PYQ     L +K
Sbjct: 241 FPTGA-LVVGRKGIEEAYRTGRGSITMRAVVAVEEI-QGRQCLVVTELPYQTNPDNLAQK 298

Query: 286 IAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           IA+L+   ++  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM 
Sbjct: 299 IADLVKDGKVGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLYKHTDLQTNFGANML 358

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
            L    VP+ + +D  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+I
Sbjct: 359 ALVD-GVPRTLSIDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALNAIDEVI 417

Query: 405 AIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           A+IR  +     +  ++    + E Q +AIL ++LR L  LE  +I +E D L A+  + 
Sbjct: 418 ALIRRSNTVEIAREGLMGLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKINEY 477

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + +L S  +Q   ++ E+  + E F                     A     +       
Sbjct: 478 NEILASPAKQRGIVSEELAAIVEKFGDDRRSKLVPFEGDMSIEDLIAEEDIVVTISRSGY 537

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V  +     RS K     +     +E D +     + T   +L  +  G+ Y   A  L 
Sbjct: 538 VKRTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELP 597

Query: 582 S--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  G+ +  L+    ++ I        Y++   L++ +  G        +  +   
Sbjct: 598 DAGRDARGQHVANLLAFQPDEKIAQILAIRDYEAVPYLILATKGGLVKKTALKDYDSPRS 657

Query: 637 KGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGV 687
            G   + +       ++++     V+  D + ++ +  + + F+     +  M R   GV
Sbjct: 658 GGVIAINLREMPDGGDDELIGAELVSAEDDLLLISKKAQSIRFTATDDALRPMGRATSGV 717

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           +  S+++G     +   +  G     +    Y +        +  RGG+G    K     
Sbjct: 718 KGMSFREGDELLSMNV-VRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDR 776

Query: 748 GKFLSS 753
           G  + +
Sbjct: 777 GSLVGA 782


>gi|124022624|ref|YP_001016931.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9303]
 gi|123962910|gb|ABM77666.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
          Length = 875

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 232/789 (29%), Positives = 391/789 (49%), Gaps = 59/789 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  + PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +  + +L+ ++ + VD+ D ++    EP+V P++ P LL NG+SGIAVGMAT+I
Sbjct: 135 ESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLLNGSSGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +   ALI NPE+S  +L+  I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 195 PPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQIL-GRSGIRETYLTGRGSVT 253

Query: 252 VRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++TE+PYQ  K+ LIE+IAE++  K++  + DIRDES  
Sbjct: 254 MRGVANIETIEHPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  +M  L     P ++ L  +L+ +L  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALV-NGEPVLLTLRKMLQVFLDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLT 424
           R + + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +     LT
Sbjct: 373 RVDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQEHHGLT 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ +++E
Sbjct: 433 EIQADAILQMQLRRLTALEADKIRLEHEDLVTKIANYKDILGRRERVFALIEDELAKLRE 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SH 536
                     RRT   ++    +      +I  E   V+++  G+++ +           
Sbjct: 493 KHCLP-----RRTEILDLGGGLEDI---DLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
           +   +    +  +++K+ +  +  D +LL S  G +Y LPA  +       +   +  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I    +   +D    LL+++  G       S        G   + +   + + 
Sbjct: 605 PIPREEAITSLLSVISFDDDTHLLMLTKGGFIKRTSLSAFSKIRSNGLIAIGLEEGDALT 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGG----------- 696
            V   V GD V +       + F +  +++  + R  +GVR  + + G            
Sbjct: 665 WVRLAVPGDSVLIASRAGMTIHFRLCDEELRPLGRTARGVRAMNLRGGDSLVSMDVLPVE 724

Query: 697 -------------ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                           V    + +G   + ++     +        L KR G+G    K 
Sbjct: 725 LADQVAKSLEDDPDDSVETVVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKF 784

Query: 744 FPRSGKFLS 752
                + + 
Sbjct: 785 RREGDELVG 793



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 5/119 (4%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVS-SEEKMKLV 653
           +   D V   V      +LV S+ G    V  ++     R G     +K     +++  +
Sbjct: 735 DDPDDSVETVVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKFRREGDELVGL 794

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
             +  G+ + +V E   ++  S D+IP+ SR   GVRLQ    G     +     +   
Sbjct: 795 RVLGYGEELLLVSERGVIVRTSADKIPQQSRAATGVRLQRLDAGDRLSEVVLVPPDSED 853


>gi|291320523|ref|YP_003515787.1| DNA gyrase subunit A [Mycoplasma agalactiae]
 gi|290752858|emb|CBH40833.1| DNA gyrase subunit A [Mycoplasma agalactiae]
          Length = 919

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 242/764 (31%), Positives = 406/764 (53%), Gaps = 32/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + ++ +  + +   ++  +L YA+S I  RA+PD RDG KPVHRRI++ MSE+G+  G 
Sbjct: 69  EIEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             +KSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPLI G GNFG+IDGD AAA R
Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMR 188

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++VA L+L+G+ +D VDF D Y+  + EP V PS+FPNLL +G SGIAVGMATS
Sbjct: 189 YTEARMSKVAALMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A +AL  NPEISI +++E++ GPDFPTG +I    + I E+Y  G+G  
Sbjct: 249 IPPHNLAETIDATIALAKNPEISISEIMEFLPGPDFPTGAMI-MGTKGIKEAYETGKGSI 307

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR+   +E +  G   I+V+EIPY+++K+ +IEKIA+L+  K I  + D+RDES  +  
Sbjct: 308 SVRSIAKIEHLQNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGI 367

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +   P++++  ++  + +++ + +N   L     P+++ +   L+ +L H+  
Sbjct: 368 RIIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVD-GEPKLLNIKYALEVYLKHQEN 426

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQ 427
           V+ RR  F +   + R+ IL+GL IA  NIDE+I II++    +    +   RF L+E Q
Sbjct: 427 VVTRRLRFDLNKANDRMHILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSARFDLSEKQ 486

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+++RL  L  L    +  E+ NL AE E+I ++L +     + I  E+ E+K  ++
Sbjct: 487 TKAIVDMRLGRLTGLAVDGMIEEMQNLAAEIERITNILANRDLLIDLIIDELTEIKNKYA 546

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   +   A  +   + +I K  I +  S +G+++          +   V 
Sbjct: 547 DE-----RRTVIDKNISA--SINDEDLISKRDIVITTSTKGYVKRIDLEEYKTQRRGGVG 599

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----LI 594
           ++ +     D +   +   T   +L+ +  G+ Y + A  +       +          +
Sbjct: 600 ITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRAHEIPELNRQSKGTSFINIIPRL 659

Query: 595 DLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            ++  + +++    D       L   +  G       SE       GK    +  E+++ 
Sbjct: 660 KVDEGEKVISMLAVDEYSDDKYLFTATKLGIIKKTSLSEFQIININGKRAFNLKEEDELI 719

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
               +  D  + +    ++++ F  ++   +SR   GV+  +  +     +      EG 
Sbjct: 720 RASIIDDDELILLANSKQRIVKFHSNEFRALSRIATGVKGITLAEDET-CISASSSSEGE 778

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      + +  +  L  L  RGG G +      ++G  + +
Sbjct: 779 LILTIGKNGFGKITHHSLFRLVHRGGKGVIGIN-SDKAGNLVFA 821



 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMK 651
           I L  ++  ++A        +L +   G   I   S      R GK  + ++S++   + 
Sbjct: 760 ITLAEDETCISASSSSEGELILTIGKNGFGKITHHSLFRLVHRGGKGVIGINSDKAGNLV 819

Query: 652 LVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
               V   D + ++  +   +   I  I E  R  KGV+L + K       +     E  
Sbjct: 820 FARFVNPHDEILMITTSGLTIRIPIKDINETGRATKGVKLINLKKKEQIQAVEIVKLESD 879

Query: 710 TWIDSA 715
           + +D  
Sbjct: 880 STLDET 885


>gi|305681552|ref|ZP_07404358.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266]
 gi|305658712|gb|EFM48213.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266]
          Length = 851

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 231/764 (30%), Positives = 389/764 (50%), Gaps = 37/764 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  + L   ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G      + K
Sbjct: 18  DRILPIDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRGYVK 77

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA RYTE 
Sbjct: 78  SARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTEC 137

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG++GIAVGMAT+IP H
Sbjct: 138 RLTPLAMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNIPPH 197

Query: 195 NVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A   L++NP+      +E  +E+I GPDFPT G ++   + I ++Y  GRG  
Sbjct: 198 NLRELADAIYWLLENPDADDATALEACMEHIKGPDFPTAG-LIVGTQGIKDAYTTGRGSI 256

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
           R+R    +EE G     IV+TE+PYQV    LI  IAE +   ++  +  I DE S    
Sbjct: 257 RMRGVTSIEEEGS-RQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDRVG 315

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P +++ +++  S ++T F  NM  +    VP+ + LD +L+ ++AH+ 
Sbjct: 316 MRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVD-GVPRTLRLDQMLRYYVAHQI 374

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTEN 426
           EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR  +              + E 
Sbjct: 375 EVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARRGLIDLLTIDEV 434

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L  LE  +I  EL  + A    +  +L S  +Q   +  E++E+ + +
Sbjct: 435 QADAILAMQLRRLAALERQKIIDELAEIEAIIADLKDILASPGRQRTIVRDELKEIVDKY 494

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RR+       A     ++ +I +E + V I++ G+ +  K  +         
Sbjct: 495 GD-----DRRSQII---AATGDVTEEDLIARENVVVTITSTGYAKRTKVDAYKSQRRGGK 546

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +     K+ D ++      T D IL  +  G+ Y L A  L        G+ +  L++ 
Sbjct: 547 GVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLEF 606

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y+    L++ + +G       S+  +    G   + ++  +K+   
Sbjct: 607 QPEERIAQVIQIQSYEDAPYLVLATVQGRVKKSRLSDYESARSGGLIAINLNEGDKLIGA 666

Query: 654 VKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
                 D + +V E  + + FS D   +  M R   GV+   ++       +   + +G 
Sbjct: 667 SLCSNEDDLLLVSEEGQSIRFSADDEQLRPMGRSTAGVKGMRFRGDDHLLAMTV-VRDGS 725

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +  +     +  RGGVG +  K  P+ GK + +
Sbjct: 726 YLLVATAGGYGKRTSMDEYSVQGRGGVGVVTFKYNPKRGKLIGA 769



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 86/247 (34%), Gaps = 32/247 (12%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADK--ATLQQAMIEKEPITVVISNRGWIRSLKS 535
            ++  +   +  T  G+      E    ++    +Q    E  P  V+ + +G ++  + 
Sbjct: 582 RLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQIQSYEDAPYLVLATVQGRVKKSRL 641

Query: 536 HSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGE 588
                     L A++  EGD L  A      D +LL+S +G++    A +      G   
Sbjct: 642 SDYESARSGGLIAINLNEGDKLIGASLCSNEDDLLLVSEEGQSIRFSADDEQLRPMGRST 701

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-------------NT 635
           A    +    +  ++   V      LLV ++ G        E                N 
Sbjct: 702 AGVKGMRFRGDDHLLAMTVVRDGSYLLVATAGGYGKRTSMDEYSVQGRGGVGVVTFKYNP 761

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
           ++GK    ++ ++          D +  +     ++   ++QI   SR   GVRL + +D
Sbjct: 762 KRGKLIGALAVDD---------DDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLED 812

Query: 695 GGISDVI 701
           G     I
Sbjct: 813 GIELLAI 819


>gi|300023686|ref|YP_003756297.1| DNA gyrase subunit alpha [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525507|gb|ADJ23976.1| DNA gyrase, A subunit [Hyphomicrobium denitrificans ATCC 51888]
          Length = 915

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 256/858 (29%), Positives = 408/858 (47%), Gaps = 120/858 (13%)

Query: 6   ISNSNTLV------EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           +++++           +++ VS+   +++ YL YA+S I  RA+PD+RDG KPVHRRI+ 
Sbjct: 1   MTDNSDDERPAGREPSDIRPVSISDEMKKSYLDYAMSVIISRALPDVRDGLKPVHRRILF 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+E+GLD+   + KSARIVGEV+GK HPHG+ ++YD+LVRLAQ F  R PL+ GQGNFG
Sbjct: 61  AMNELGLDWNKKYVKSARIVGEVMGKYHPHGNLAIYDALVRLAQDFSMRVPLVDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD  AA RYTE+R+ +VA  +L  +D D VD+RD Y+    EP V P+KFPNLL NG
Sbjct: 121 SIDGDPPAAERYTESRLAKVASFLLDDLDNDTVDYRDNYDGTIQEPSVLPAKFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +A +A +DNPEI I++L + I GPDFPT G ++  R  I
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIADLDNPEIGIDELSQIIQGPDFPTAG-LILGRGGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           + +Y  GRG   +RAR  VE + +    +VV+EIPYQV K  LIEKIA+L+  K+I  + 
Sbjct: 240 LSAYHKGRGSIIMRARVTVEHIRKDREALVVSEIPYQVNKRTLIEKIADLVRDKKIEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+ DES  +   ++    R    D+++ +++  SD++T F  NM  ++ G  P+ + L  
Sbjct: 300 DLWDESNREGIRIVIELKRDAVADVVLNNLYKYSDLQTTFGANMLAIN-GGRPESLTLKD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +  + + R++V+ RR    +     R  +L GL IA  NIDE+I +IR    P      
Sbjct: 359 FISAFTSFRQDVVTRRIKHLLNKARDRAHVLVGLAIAVANIDEVIKLIRFSASPAEAKEQ 418

Query: 420 -----------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         + L+E Q  AIL LRL  L  L   +I  E
Sbjct: 419 LMARDWPAKDMVPLIELIADPRHKVSATGTYRLSEEQAKAILELRLARLTALGRDEIADE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           L+ +  E  +  ++L S  +  + +  E++ +K+ F+       R+T   ++        
Sbjct: 479 LNKIANEIREYLAILASRARVVDIVKGELQTIKDEFATP-----RKTEIVDIEGE---VE 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I++E   V +S++G+I+          +      S +  ++ D +       T   
Sbjct: 531 DEDLIQREDCVVTVSHKGYIKRVPLATYRAQRRGGKGRSGMSTRDEDFVTQLFVTSTHTP 590

Query: 563 ILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KL 614
           +L  S+ G  Y +    L     +  G+A+  L+ L  ++ I +              +L
Sbjct: 591 VLFFSSRGMCYRMKVWRLPPASPQSPGKALVNLLPLAQDEVITSILPLPEDSSTWSELEL 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE-NRKLLIF 673
           +  +  GN      ++  +  R GK  +K+   + +  V     D   ++   N + + F
Sbjct: 651 IFATRSGNVRRNALADFESINRNGKIAMKLDEGDSIVQVAIAKPDQDVLLTSGNGQCVRF 710

Query: 674 SI-DQIPE-MSR-GKGVRLQSYKDGGISDVICFKI------------------------- 705
            I D+I     R   GVR     DG     +                             
Sbjct: 711 LISDEIRLFKGRDSTGVRGIRLGDGDEVISMAILDHFEASAEERAAYLKQASALRRSEET 770

Query: 706 ----------------------CEGLTWIDSAG--------RSYNRSENDLLGWLGKRGG 735
                                  E    + +          + + +  +        RGG
Sbjct: 771 EDAEPVAEADAEEVSAEAVTLSPERFAVMQAGEQFVLTVSSKGFGKRSSSFEFRTSGRGG 830

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +      R+G+ L+S
Sbjct: 831 KGIVAMVVNDRNGRLLAS 848



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGE 666
              +L VSSKG        E   + R GK  + +   ++   +     +   D + +V +
Sbjct: 803 EQFVLTVSSKGFGKRSSSFEFRTSGRGGKGIVAMVVNDRNGRLLASFPIDEKDQIMLVTD 862

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLT 710
             +L+   +D +    R  +GVR+   + +  +  V      E   
Sbjct: 863 GGQLIRCPVDGVRIAGRNTQGVRIFKTEAEEKVVSVERITEDETDE 908



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 2/102 (1%)

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            V++     V  V         S  +     R GKG+      D     +  F I E   
Sbjct: 797 AVMQAGEQFVLTVSSKGFGKRSSSFEFRTSGRGGKGIVAMVVNDRNGRLLASFPIDEKDQ 856

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +                 +  R   G  + K      K +S
Sbjct: 857 IMLVTDGGQLIRCPVDGVRIAGRNTQGVRIFK-TEAEEKVVS 897


>gi|13507743|ref|NP_109692.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129]
 gi|2507467|sp|P22446|GYRA_MYCPN RecName: Full=DNA gyrase subunit A
 gi|1673810|gb|AAB95798.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129]
          Length = 839

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 248/756 (32%), Positives = 386/756 (51%), Gaps = 28/756 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             L +  +K +SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++     G+   
Sbjct: 13  QELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHD 72

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F  RY LI G GNFG+IDGD  AA 
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++A  +L+ +D+D VDF   Y+ E+ EP V P+ FPNLLANG+SGIAVGM+T
Sbjct: 133 RYTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMST 192

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIPSHN+ E+ +  + LIDNP+ +I  LL  I GPDFPTG  I+ ++  I   +  G+G 
Sbjct: 193 SIPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTK-GIESYFETGKGN 251

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R++  +E++      +VVTEIPY V K+ LIEKI EL+ A+ I  + DIRDES+ + 
Sbjct: 252 VVIRSKVSIEQL-PTRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++L+  +F  + ++ RFP+NM  L     P+++ +   L  +L H+ 
Sbjct: 311 IRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVK-GAPKLLNMKQALTVYLEHQL 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           +VL R++ F ++    R  IL GLLIA LNIDE+IAII+           +  RF L E 
Sbjct: 370 DVLIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHERFGLDEI 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  A+L++RLRSL  LE  ++++E   L A  E    +L   + Q   I  ++ ++ E F
Sbjct: 430 QARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADKQLQLKLIKEQLTKINEQF 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RR+         +    + +I +E + + +S  G+++              V
Sbjct: 490 GDP-----RRSEIL--YGISEDIDDEDLITQENVVITMSTNGYLKRIGVDAYNLQHRGGV 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  L     DS+   L   T   +L  +  GK Y + A  +  G    +      LI +
Sbjct: 543 GVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPPGFRTNKGIPAVNLIKI 602

Query: 597 NHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           + ++ I      +          +  G       SE       GK  +     + +  V+
Sbjct: 603 DKDEKICALISVNDYQNGYFFFCTKNGTIKRTSLSEFANILSIGKRAILFKENDVLFSVI 662

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
           + +G D + +      ++ F  D +  +SR   GV   +       + +      G   +
Sbjct: 663 RTSGQDDIFIGSTAGFVVRFHEDTVRPLSRAAMGVLGINLNQCEFVNGLS-TSSNGSLLL 721

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                   +  +     L KR   G    +   ++G
Sbjct: 722 SVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTAKTG 757



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 7/186 (3%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S+   A+ FKE D L   +     D I + ST G         +         + L I+L
Sbjct: 644 SIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLSRAAMGV-LGINL 702

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKL 652
           N  + +       +   LL V   G   +    +     R  K    +     +   +  
Sbjct: 703 NQCEFVNGLSTSSNGSLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTAKTGPVVTT 762

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLT 710
                 + + ++    K++  S++Q+ E  +   GV+L   K+   +  V  FK  E + 
Sbjct: 763 TTVFGNEDLLMISSAGKIVRISLEQLSEQRKNTSGVKLIKLKEKERLETVTIFKKEEAIK 822

Query: 711 WIDSAG 716
              +  
Sbjct: 823 TTTATE 828


>gi|157825406|ref|YP_001493126.1| DNA gyrase subunit A [Rickettsia akari str. Hartford]
 gi|157799364|gb|ABV74618.1| DNA gyrase subunit A [Rickettsia akari str. Hartford]
          Length = 898

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 241/825 (29%), Positives = 382/825 (46%), Gaps = 88/825 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
             N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++
Sbjct: 6   SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYR 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSAIYDSLVRMAQAFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RM +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP 
Sbjct: 126 SRMAKVSHKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R
Sbjct: 186 HNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   + 
Sbjct: 245 GRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIF 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+ 
Sbjct: 305 IELKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVIT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------ 415
            R+ + +     +  IL GL IA  NIDEII II+  +                      
Sbjct: 364 NRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAANDTNAAKQELMARSWEALKILPL 423

Query: 416 ----------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                         + S TE Q  AIL +RL+ L  +E+ +++ EL NL  E  +  ++L
Sbjct: 424 VKLVDDKAMLNEQDKCSFTELQAKAILEMRLQRLTAMEKNKLEEELKNLATEITEYINIL 483

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +    +  E+ +VKE F+           F +         +  +       +   
Sbjct: 484 GSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRV 543

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                RS K      S L  ++ D         T   +L  S  G+ Y+L    L     
Sbjct: 544 PLSSYRSQKRGGKGRSGLSMRDEDITTRIFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNP 603

Query: 586 HGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRK 637
            G+   +  ++ L  N+ I                 ++  ++KGN    +  +       
Sbjct: 604 QGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSS 663

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSY-K 693
           GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   GVR     K
Sbjct: 664 GKIAIRLDDDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAK 723

Query: 694 DGGISDVICFK----------------------------------------------ICE 707
           +  +  +   K                                                 
Sbjct: 724 EDSVISMTVLKGINSTKEDRDAYFTVPWAKRLEIAKGEEFNLEELGVTLTADSILKMANS 783

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      + +  +     +  RGG G +      ++G  + 
Sbjct: 784 EEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           + +S   +L V+  G              R G   + +   +K   +  V+ V   D + 
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKIDDELM 839

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           ++  + KL+   ++ +    R   GV L    DG     +        +
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAETSES 888



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 64/227 (28%), Gaps = 57/227 (25%)

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI-- 631
            +   +LL  +    + ++ I L+ +  ++          +L+ +  G A       +  
Sbjct: 648 NIRRSDLLDFKKIQSSGKIAIRLDDDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRV 707

Query: 632 -IANTRKGKTFLKVSSEEKMKLVVKVTG-------------------------------- 658
             + T  G   +K++ E+ +  +  + G                                
Sbjct: 708 IKSRTSDGVRGMKLAKEDSVISMTVLKGINSTKEDRDAYFTVPWAKRLEIAKGEEFNLEE 767

Query: 659 -----------------DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD--GGIS 698
                            + +  V EN      S        RG  G+      D  G + 
Sbjct: 768 LGVTLTADSILKMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVV 827

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            V+  KI + L  I ++G+            +  R   G ++ K   
Sbjct: 828 GVMPVKIDDELMLITNSGK--LIRCKLESVRITGRNTSGVILFKLDD 872



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A++ + IL ++ +G      A         G  I  +   +    +V         +L+
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKIDDELM 839

Query: 616 VVSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           ++++ G     +     I      G    K+   EK+  V  +  
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884


>gi|225020898|ref|ZP_03710090.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946380|gb|EEG27589.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 838

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 232/764 (30%), Positives = 389/764 (50%), Gaps = 37/764 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  + L   ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G      + K
Sbjct: 5   DRILPIDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRGYVK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA RYTE 
Sbjct: 65  SARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTEC 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG++GIAVGMAT+IP H
Sbjct: 125 RLTPLAMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A   L++NP+      +E  +EYI GPDFPT G ++   + I ++Y  GRG  
Sbjct: 185 NLRELADAIYWLLENPDADDATALEACMEYIKGPDFPTAG-LIVGTQGIKDAYTTGRGSI 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
           R+R    +EE G     IV+TE+PYQV    LI  IAE +   ++  +  I DE S    
Sbjct: 244 RMRGVTSIEEEGS-RQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDRVG 302

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P +++ +++  S ++T F  NM  +    VP+ + LD +L+ ++AH+ 
Sbjct: 303 MRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVD-GVPRTLRLDQMLRYYVAHQI 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTEN 426
           EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR  +              + E 
Sbjct: 362 EVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARRGLIDLLTIDEV 421

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L  LE  +I  EL  + A    +  +L S  +Q   +  E++E+ + +
Sbjct: 422 QADAILAMQLRRLAALERQKIIDELAEIEAIIADLKDILASPGRQRAIVRDELKEIVDKY 481

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RR+       A     ++ +I +E + V I++ G+ +  K  +         
Sbjct: 482 GD-----DRRSQII---AATGDVTEEDLIARENVVVTITSTGYAKRTKVDAYKSQRRGGK 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +     K+ D ++      T D IL  +  G+ Y L A  L        G+ +  L++ 
Sbjct: 534 GVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLEF 593

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y+    L++ + +G       S+  +    G   + ++  +K+   
Sbjct: 594 QPEERIAQVIQIQSYEDAPYLVLATVQGRVKKSRLSDYESARSGGLIAINLNEGDKLIGA 653

Query: 654 VKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
                 D + +V E  + + FS D   +  M R   GV+   ++       +   + +G 
Sbjct: 654 SLCSNEDDLLLVSEEGQSIRFSADDEQLRPMGRSTAGVKGMRFRGDDHLLAMTV-VRDGS 712

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +  +     +  RGGVG +  K  P+ GK + +
Sbjct: 713 YLLVATAGGYGKRTSMDEYSVQGRGGVGVVTFKYNPKRGKLIGA 756



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 84/238 (35%), Gaps = 14/238 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADK--ATLQQAMIEKEPITVVISNRGWIRSLKS 535
            ++  +   +  T  G+      E    ++    +Q    E  P  V+ + +G ++  + 
Sbjct: 569 RLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQIQSYEDAPYLVLATVQGRVKKSRL 628

Query: 536 HSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGE 588
                     L A++  EGD L  A      D +LL+S +G++    A +      G   
Sbjct: 629 SDYESARSGGLIAINLNEGDKLIGASLCSNEDDLLLVSEEGQSIRFSADDEQLRPMGRST 688

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS--- 645
           A    +    +  ++   V      LLV ++ G        E     R G   +      
Sbjct: 689 AGVKGMRFRGDDHLLAMTVVRDGSYLLVATAGGYGKRTSMDEYSVQGRGGVGVVTFKYNP 748

Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
              K+   + V  D  +  +     ++   ++QI   SR   GVRL + +DG     I
Sbjct: 749 KRGKLIGALAVDNDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGIELLAI 806


>gi|148284134|ref|YP_001248224.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Boryong]
 gi|146739573|emb|CAM79318.1| DNA gyrase subunit A protein [Orientia tsutsugamushi str. Boryong]
          Length = 905

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 247/837 (29%), Positives = 384/837 (45%), Gaps = 95/837 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      E N+  +S++  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM E G
Sbjct: 1   MSEQ-EYKESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
             +   ++KSAR+VG+VIGK HPHG+ +VYDSLVR+AQ F  R PL+ GQGNFG++DGD+
Sbjct: 60  YHYNKQYRKSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDA 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ +VA  +L+ +++D VDF+  Y+  + EP V P+ FPNLL NGT GIAV
Sbjct: 120 AAAMRYTEVRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  A IDN  I+I +L+E + GPDFPTGG I+     I  +Y  
Sbjct: 180 GMATNIPPHNLCEVVDACCAYIDNNNITIIELMELVKGPDFPTGGQII-GTFGIKSAYNT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VR +  + E       I++TEIP+ V K+ L+EKIAEL+  KRI  +  IRDES
Sbjct: 239 GRGKIIVRGKTDI-ESDSLKHAIIITEIPFMVNKASLVEKIAELVNDKRIEGISAIRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    V+    +  + DL++  ++  + ++T F + M  L    +P+ M L  I+  + 
Sbjct: 298 NKSGIRVVIELKKHANTDLILNQLYSYTSLQTTFNVMMLALD-QGIPKTMTLKDIIVAFT 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
             R EV+ +R+ F +     +  IL G++IA  NIDE+I IIR+    +           
Sbjct: 357 NFREEVITKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMW 416

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 +  LTE Q  +IL LRL+ L   E  +++ EL+NL+ E
Sbjct: 417 NVSDVYDLVKLVDDRAILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKE 476

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +    +L S  +    +  E+ ++KE FS +         F +         +  +   
Sbjct: 477 IKAYLEILGSRDKLLETMKFELNQIKEQFSTARLTTIENQEFEQDIEDLIPEEEVVVTVT 536

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               +        R+ K           +  D +      +T   IL  S  G+ Y L  
Sbjct: 537 LAGYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLKV 596

Query: 578 GNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD-------STCKLLVVSSKGNAFIVEE 628
             L  G    +   I  LI +  N+ I                  ++  +  GN    + 
Sbjct: 597 YKLPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRNDL 656

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK- 685
           S+       GK  +++   + +  V     + HV +  +N K + F +  +    SR   
Sbjct: 657 SDFKHIASNGKIAIRLDEGDSLISVKSCDEENHVLLATQNGKAIRFPVKDLRVFKSRTSD 716

Query: 686 GVRLQSYKDGG------------------------------------------------- 696
           GV+                                                         
Sbjct: 717 GVKAIKLAGNDAVISMTILKGINCSLEVRENYLNLPVSNRLLIAKNKLLHPSIDLSKYNL 776

Query: 697 -ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +++     E    +  +   Y +  +     + KRGG G        ++GK +S
Sbjct: 777 TEDEMLTMASNEEF-ILTVSENGYGKFSSAYEYRVTKRGGKGVANMNVSSKTGKVVS 832



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSE-EKMKLVVK-VTGDHVA 662
           +  +   +L VS  G        E     R GK    + VSS+  K+  V+     + + 
Sbjct: 784 MASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGVANMNVSSKTGKVVSVLPACQDNELM 843

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICE 707
           ++  + KL+   ++ +  + R   GV L    KD  +  +   K  +
Sbjct: 844 LITSSGKLIRCQLNSVRIIGRSTSGVILFKTSKDEKVVSIDTIKDTD 890


>gi|225630869|ref|YP_002727660.1| DNA gyrase, A subunit [Wolbachia sp. wRi]
 gi|225592850|gb|ACN95869.1| DNA gyrase, A subunit [Wolbachia sp. wRi]
          Length = 902

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 257/830 (30%), Positives = 400/830 (48%), Gaps = 91/830 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  +S+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +
Sbjct: 1   MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PLI GQGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +V+  +L  +DED VDFR  Y+  ++EPVV P++FPNLL NG SG+AVGMAT+IP
Sbjct: 121 EARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +A +  +DNPE+++++LLE + GPDFPTGG I+  R  I  ++  GRG   V
Sbjct: 181 SHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +E++ +    IV+ EIPYQV K +LIEKI EL+  KRI  + +IRDES +    V
Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R+ +   ++  I  L+ + + F +N  VL+    P +M L  I++ ++  R+EVL
Sbjct: 300 VIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLN-NNRPALMSLKEIIEAFIDFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            RR+ FR++    +  I  GL IA L+IDE+I IIR    P                   
Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEIN 418

Query: 420 ----------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                            + LTE Q+ AIL+++L+ L  LE+ ++++EL +++   ++  +
Sbjct: 419 TIIELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            L SG++   +I   ++E+K  F+         +     +          +       + 
Sbjct: 479 FLGSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDMVITVTMNGYIK 538

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-- 581
                  R+ +           KE D +      +T   +L  S  G+ Y L    L   
Sbjct: 539 RVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRVYRLKVYKLPLA 598

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRK 637
                G A+  +  L   + I          D    ++  ++ GN      ++       
Sbjct: 599 EPTARGRALVNIFPLAEGETITNIMPLPSENDENQNIVFTTAYGNIRRNSLADFHYIPSN 658

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSY-K 693
           GK  +K+   +K+  V      DHV +     K + F +  + +  SR   GVR     K
Sbjct: 659 GKIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSDVRQFKSRNSDGVRGIKLAK 718

Query: 694 DGGISDVICFK------------------------------------------------- 704
           +  +  +                                                     
Sbjct: 719 NDSVISMTILNGIGVATETKELYLKVPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLK 778

Query: 705 -ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   +      + +  +     +  RGGVG        R+G  ++S
Sbjct: 779 LAVNEEFILTITENGFGKRTSAYEYRITNRGGVGITNILTTSRNGNVVAS 828



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 68/553 (12%), Positives = 153/553 (27%), Gaps = 76/553 (13%)

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
                + S + I+E++   R    +R R             +   +   V     + KI 
Sbjct: 335 NNRPALMSLKEIIEAFIDFRKEVLIR-RTEFRLRKTREKAHIYIGLYIAVLSIDEVIKII 393

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
                      E +  E      I    +  S     L + ++ L++++ +  L+M +  
Sbjct: 394 RGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFLKDGVYRLTELQIKAILDMKLQR 453

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
           +  + +   L+  L   +   +E +    S      + +  + +      +     I   
Sbjct: 454 LTGLEK-DKLEAELSSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRFAVPRKTSIEES 512

Query: 408 RNEDKPKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
             + + +  +      +T      I  ++L   R             L  E    +  + 
Sbjct: 513 DTDIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVT 572

Query: 467 SGKQQWNQIAC-----EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           +        +       ++  K   ++ T  GR       ++  +  T    +  +    
Sbjct: 573 NTHTSVLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPLAEGETITNIMPLPSENDEN 632

Query: 522 ---VVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
              V  +  G IR           S    A+   EGD L      +  D + L +  GK+
Sbjct: 633 QNIVFTTAYGNIRRNSLADFHYIPSNGKIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKS 692

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD----------------------- 609
                 ++   +         I L  N  +++  + +                       
Sbjct: 693 IRFVVSDVRQFKSRNSDGVRGIKLAKNDSVISMTILNGIGVATETKELYLKVPLAKRLGT 752

Query: 610 -----------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                                        +   +L ++  G        E     R G  
Sbjct: 753 AINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTITENGFGKRTSAYEYRITNRGGVG 812

Query: 641 FLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              +     +   +       GD++ ++ +  KL+  S++ I    R  +GV L  +K  
Sbjct: 813 ITNILTTSRNGNVVASFPVEQGDNIMLITDKGKLIRISVNDIRIAGRSTQGVTL--FKTE 870

Query: 696 GISDVICFKICEG 708
               V+     E 
Sbjct: 871 SREKVVSVAKIED 883


>gi|222148750|ref|YP_002549707.1| DNA gyrase subunit A [Agrobacterium vitis S4]
 gi|221735736|gb|ACM36699.1| DNA gyrase A subunit [Agrobacterium vitis S4]
          Length = 930

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 248/855 (29%), Positives = 406/855 (47%), Gaps = 118/855 (13%)

Query: 6   ISNSNTL---VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++  +T    +  +++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+  MS
Sbjct: 1   MTEQSTPGGKMPSDIEPISIITEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFGMS 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+G+D+   + K AR+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG+ID
Sbjct: 61  ELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSID 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE R+ + A  +L  +D+D VDFRD Y+   SEPVV P+KFPNLL NG  G
Sbjct: 121 GDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+    +ALI+NP I + +L++ I GPDFPTG  ++  R  I  +
Sbjct: 181 IAVGMATNIPPHNLVEVINGCIALIENPAIDLPELMQIIPGPDFPTGA-LILGRSGIRSA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +R    +E +      I++TEIPYQV KS +IEK+AEL+  KRI  + D+R
Sbjct: 240 YETGRGSVIMRGVARIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R  + D+++  ++  + +++ F  NM  L+ G  P+ + L  +L+
Sbjct: 300 DESDRQGYRVVVELKRDANADVILNQLYRYTPLQSSFGCNMVALN-GGKPEQLTLLDMLR 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------- 415
            +++ R EV+ RR+ + ++    R  +L GL IA  NIDE+I +IR    P+        
Sbjct: 359 AFVSFREEVISRRTKYLLRKARDRAHVLVGLAIAVANIDEVIRLIRQAPDPQTAREQLME 418

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    + ++L+E Q  AIL LRL  L  L   +I  EL+ 
Sbjct: 419 RRWPAADVESLIRLIDDPRHRINEDNTYNLSEEQARAILELRLARLTALGRDEIDEELNK 478

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           + AE      +L+S  +    +  E+  V++ F        RR+   E          + 
Sbjct: 479 IGAEISDYLDILSSRTRIQTIVVDELVAVRDEFGTP-----RRSQIME---GGPDMDDED 530

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+I+          +      S +  ++ D +     A+T   +L 
Sbjct: 531 LIAREDMVVTVSHLGYIKRVPLVTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLF 590

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G  Y      L   + +  G+A+  ++ L   + I T               ++  
Sbjct: 591 FSSRGIVYKEKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDEASWDNLDVMFS 650

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSI 675
           +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F +
Sbjct: 651 TTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVETCTIDDDVLLTTALGQAIRFPV 710

Query: 676 DQIPEM-SRGK-GVRLQSYK-------------------------------------DGG 696
           D++     R   GVR  S +                                     D  
Sbjct: 711 DEVRVFAGRNSIGVRGISLQPNDRIISMTILSHVDAEPWQRAAYLKRSATERRASGVDED 770

Query: 697 ISDVICFKICE---------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
              ++  ++ E                   +  + R   +  +        RGG G    
Sbjct: 771 DIALVGEEVGEIGDLSEERYQELKAREQFVLTISERGIGKRSSSYDFRTSGRGGKGIRAT 830

Query: 742 KGFPRS---GKFLSS 753
               ++   G+ +++
Sbjct: 831 DTS-KTLEIGQLVAA 844



 Score = 63.3 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVVKVTG-DHVAVV 664
              +L +S +G        +   + R GK              ++     V   D + +V
Sbjct: 797 EQFVLTISERGIGKRSSSYDFRTSGRGGKGIRATDTSKTLEIGQLVAAFPVEDKDQIMLV 856

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDVICFKICEGLT 710
            +  +L+   +D I   SR  KGV + +  KD  +  V      EG  
Sbjct: 857 SDGGQLIRVPVDGIRIASRATKGVTIFNTAKDEKVVSVERINEPEGEE 904


>gi|317164426|gb|ADV07967.1| DNA gyrase subunit A [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 916

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 238/851 (27%), Positives = 401/851 (47%), Gaps = 114/851 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VY+++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKN-GVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 773 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGE 832

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 833 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 892

Query: 704 KICEGLTW 711
              +    
Sbjct: 893 VAEDESEL 900



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L  + +G     P  +       G+    +     N D+V A +   T  L++++S G
Sbjct: 797 QVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGG 856

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
                +  +I    R   G   + +   E +  + +V  D 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897


>gi|333025713|ref|ZP_08453777.1| putative DNA gyrase subunit A [Streptomyces sp. Tu6071]
 gi|332745565|gb|EGJ76006.1| putative DNA gyrase subunit A [Streptomyces sp. Tu6071]
          Length = 846

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 240/768 (31%), Positives = 386/768 (50%), Gaps = 42/768 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 2   RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +
Sbjct: 62  ARVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECK 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 122 MAPLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   + +PE S E+    L+E I GPDFPTG  +V  R+ I E+YR GRG   
Sbjct: 182 LREVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGA-LVVGRKGIEEAYRTGRGSIP 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RDE S+   +
Sbjct: 241 MRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ ++F  +D++T F  NM  L    VP+ + LD  ++ W+ H+ E
Sbjct: 300 RLVVVLKRDAVAKVVLNNLFKHTDLQTNFSANMLALVD-GVPRTLSLDAFIRHWVTHQIE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D  +           + E Q
Sbjct: 359 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLMGLLEIDEIQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  ++  E D L    ++  ++L S ++Q   +  E+ ++ + F 
Sbjct: 419 ANAILEMQLRRLAALERQKLIQEHDELQRRIDEYKAILASPERQRQIVNDELGQIVDKFG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+              + +I +E I V IS  G+++          K     
Sbjct: 479 D-----DRRSQLVPFDGDMS---MEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           +     KE D +       T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 531 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 590

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        Y++   L++ +  G        +  +    G   + +       +++
Sbjct: 591 PDESIAQILAIKDYEAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDE 650

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           +     V+  D + ++    + + F+     +  M R   GV+  S++DG     +   +
Sbjct: 651 LIGAELVSADDDLLLISRKAQSIRFTATDDTLRPMGRATSGVKGMSFRDGDELLSMNV-V 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             G     +    Y +        +  RGG+G    K     G  + +
Sbjct: 710 RTGTFVFTATDGGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 757



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 5/135 (3%)

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           + L   G   +    +      ++++  V  +   +   +  G A      E     R G
Sbjct: 680 DTLRPMGRATSGVKGMSFRDGDELLSMNVVRTGTFVFTATDGGYAKRSPVDEYRVQGRGG 739

Query: 639 ---KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
              K    V     +   + V   D +  +     ++   +++I +  R   GV+L +  
Sbjct: 740 LGIKAAKIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQTGRDTMGVQLINLG 799

Query: 694 DGGISDVICFKICEG 708
                  +      G
Sbjct: 800 KRDAVVAVARNAEAG 814


>gi|332967948|gb|EGK07036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella kingae ATCC
           23330]
          Length = 918

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 235/839 (28%), Positives = 398/839 (47%), Gaps = 92/839 (10%)

Query: 4   DNISNSNTL-VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + +S++N     +   AVSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 9   EKMSSANDQQFAKETIAVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMH 68

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+  ++  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++D
Sbjct: 69  ELKNNWNGAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYTLVDGQGNFGSVD 128

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+AAA RYTE RM ++A  +L  ++ED V+F D Y+  + EP+V P++FP LL NG+ G
Sbjct: 129 GDAAAAMRYTEIRMEKIAHEMLADIEEDTVNFGDNYDGSEREPLVLPTRFPALLVNGSEG 188

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMATSIP HN+++     L L+  PE  I +L++ I  PDFPTG  I      I   
Sbjct: 189 IAVGMATSIPPHNLRDTLAGCLKLLREPETDINELIDIIKAPDFPTGATIY-GLTGIRAG 247

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           Y  GRG   +R++  +E +G+      I+V EIPYQV KS+L+EKI +L+  K I  + +
Sbjct: 248 YHTGRGRVVIRSKTHIEPIGKNGEREAIIVDEIPYQVNKSKLVEKIGDLVRDKAIEGIAE 307

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES +D   ++    R+ + ++++  ++ L+ ++  F +NM  L     P+++ L  I
Sbjct: 308 LRDESDKDGTRIVIELKRNENAEVILNQLYKLTQLQDTFGINMVALVD-GQPRLLNLKQI 366

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---- 416
           L E+L HRREV+ RR+ FR++       I +G  +A  NIDE+IA+I+     +      
Sbjct: 367 LSEFLRHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKQSADVETAREAL 426

Query: 417 -----------------------------------MVSRFSLTENQVDAILNLRLRSLRK 441
                                                  + L++ Q  AIL + LR+L  
Sbjct: 427 LGRAWQSALVSEMLSRSDLDLSMARPEWLPENRGLQADGYWLSDEQARAILRMSLRNLTG 486

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           L++ +I  E  +L+A    +  +L   ++    I  E+  ++  F              +
Sbjct: 487 LDQDEIVKEYKDLMAVIVDLLDILAKPERVRQIIDDELVVMQTQFGDERKSEINAVGGGD 546

Query: 502 VSRADKATLQQAMIEKEPITVVISN-RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           ++  D    ++ ++       + +      ++ K       A   K+ D ++    A+T 
Sbjct: 547 IADEDLIPPREMVVTLTHGGYIKTQPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANTH 606

Query: 561 DRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
           D ++  +  GK + +    L        G  I  +I L  N+ +        +     + 
Sbjct: 607 DYLMCFTNLGKCHWIKVYRLPEGGRNSRGRPINNVIQLEENEKVSAILPVRDFPEDEYVF 666

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
             ++ G    V+ S     + KG   + +   + +  V K +G   + +     K + F+
Sbjct: 667 FATTLGMVKKVQLSAFKNVSVKGIKAIALRDGDSLVGVAKTSGSSDIMLFSNLGKAIRFN 726

Query: 675 I-----------------------------DQIPEMSRGKGVR----------LQSYKD- 694
                                          +   ++  KG+R               + 
Sbjct: 727 EFYNPTSNDDESEDVSGSLNDENSADDDNSSEFNLLT-NKGIRPSGRGSGGLRGMKLPEN 785

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G I  ++  ++   L  + +    Y +           +GG G +      R+G+ + +
Sbjct: 786 GRIVSLLVAELGSDLQVLTATQNGYGKRTPIEDYSRKGKGGQGIIAIDTGERNGELVGA 844



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 594 IDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--- 648
           + L  N  IV+  V +  S  ++L  +  G        +     + G+  + + + E   
Sbjct: 780 MKLPENGRIVSLLVAELGSDLQVLTATQNGYGKRTPIEDYSRKGKGGQGIIAIDTGERNG 839

Query: 649 KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           ++     V+  D + ++     L+   ++QI E  R   GV+L +  +G     I
Sbjct: 840 ELVGAALVSPSDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGTTLVSI 894


>gi|86749993|ref|YP_486489.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2]
 gi|86573021|gb|ABD07578.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2]
          Length = 925

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 267/868 (30%), Positives = 408/868 (47%), Gaps = 125/868 (14%)

Query: 1   MGV-DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M   D+          +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI+ 
Sbjct: 1   MSDKDDEKPGEPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILF 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            M E G ++   ++KSAR VG+VIGK HPHGDQSVYD++VR+AQ F  R PLI GQGNFG
Sbjct: 61  GMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD+ AA RYTE+R+T++A+L+L  +D+D VD++D Y+   +EP V P+KFPNLL NG
Sbjct: 121 SVDGDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFNEPQVLPAKFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +A +ALID+P +SI+ L   I GPDFPTGGII+  R  I
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNVIIPGPDFPTGGIIL-GRAGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y  GRG   +R +  +E V +    I+++EIPYQV K+ ++E+IA+L+  K+I  + 
Sbjct: 240 RLAYHTGRGSIVMRGKVEIETVRKDREAIIISEIPYQVNKATMVERIADLVREKKIEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  D   V+    R   PD+++  ++  + ++T F  NM  L     PQ+M L  
Sbjct: 300 DLRDESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALD-AGRPQLMNLKD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L  ++A R +V+ RR+ + +     R  IL GL IA  NIDEII +IRN   P     +
Sbjct: 359 LLTLFVAFREQVVTRRTKYLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARET 418

Query: 420 RF-----------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                           L+  Q  AIL+LRL+ L  L   +I  E
Sbjct: 419 LMSRDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEIAEE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           LD L  E      +L S  +    +  E+  VK  F+       R+T   E         
Sbjct: 479 LDKLALEIADYLDILRSRARVQTIVKDELIAVKTEFATP-----RKTVIIEQEGE---VE 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I++E + V +S+ G+++          +      S +  +E D +     A T   
Sbjct: 531 DEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTP 590

Query: 563 ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------L 614
           +L  S+ G+ Y      L      G G+A+  ++ L   + I T        +      +
Sbjct: 591 VLFFSSRGQVYKEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDV 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  ++ GN    + S+ +   R G   +K+   E +  V   T  D V +   N + + F
Sbjct: 651 MFATTGGNVRRNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTTANGQCIRF 710

Query: 674 SIDQ--------IPE-MSRGK-GVRLQSYK------------------------------ 693
            +          +     R   GVR  +                                
Sbjct: 711 PVSDQRDGKEFGVRVFQGRSSMGVRGIALAPEDKVISLSILRHLDAGSEERAAYLRRANA 770

Query: 694 -------------------DGGISDVICFKICE---------GLTWIDSAGRSYNRSEND 725
                              +G  + V   ++ E             +  +   Y +  + 
Sbjct: 771 VRRGGVEERAAVEDEAAGVEGEDASVGAIELGEQRYVEMSASEQFVLTISENGYGKRTSS 830

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RGG G +      R+GK ++S
Sbjct: 831 FEYRTTNRGGKGIVAMSVNNRNGKLVAS 858



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 8/115 (6%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSS-EEKMKLVVKVTG-DHVAVVG 665
           S   +L +S  G        E     R GK    + V++   K+     V   D + +V 
Sbjct: 812 SEQFVLTISENGYGKRTSSFEYRTTNRGGKGIVAMSVNNRNGKLVASFPVEDSDQIMLVT 871

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRS 718
           +N +L+   ++ I    R  +GV    +       V+  + I E     +  G  
Sbjct: 872 DNGQLIRCPVEGIRVAGRSTQGV--IVFDTADDEKVVSVEHIPEAEETENGNGNG 924



 Score = 40.9 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 5/122 (4%)

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
              +    + +   +L +S +G      +    +    G+ I  +   N N  +V +F  
Sbjct: 802 GEQRYVEMSASEQFVLTISENGYGKRTSSFEYRTTNRGGKGIVAMSVNNRNGKLVASFPV 861

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           + + ++++V+  G         I    R   G      + +EK+  V  +         E
Sbjct: 862 EDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFDTADDEKVVSVEHIPEAEE---TE 918

Query: 667 NR 668
           N 
Sbjct: 919 NG 920


>gi|15600157|ref|NP_253651.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAO1]
 gi|107104063|ref|ZP_01367981.1| hypothetical protein PaerPA_01005136 [Pseudomonas aeruginosa PACS2]
 gi|116054424|ref|YP_793432.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894059|ref|YP_002442928.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa LESB58]
 gi|254238322|ref|ZP_04931645.1| topoisomerase IV subunit A [Pseudomonas aeruginosa C3719]
 gi|313109970|ref|ZP_07795896.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 39016]
 gi|81622037|sp|Q9HUK1|PARC_PSEAE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|9951246|gb|AAG08349.1|AE004909_5 topoisomerase IV subunit A [Pseudomonas aeruginosa PAO1]
 gi|115589645|gb|ABJ15660.1| topoisomerase IV subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170253|gb|EAZ55764.1| topoisomerase IV subunit A [Pseudomonas aeruginosa C3719]
 gi|218774287|emb|CAW30104.1| topoisomerase IV subunit A [Pseudomonas aeruginosa LESB58]
 gi|310882398|gb|EFQ40992.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 39016]
          Length = 754

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 273/757 (36%), Positives = 437/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++ +L E++ GPDFPT   I+  R  + + Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IV+  +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM  +F  +D+ET + +N+N++ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF 
Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S  +    +  E+ + 
Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEARALSETELM-PTEPVTVVLSEKGWVRCAKGHDIDAAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y+LPA +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +   +     V     D
Sbjct: 590 ECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F +  +P++ +GKG ++       ++        +          + 
Sbjct: 650 WLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+ +   +DL  + G+RG  G+ +P+GF R    
Sbjct: 710 AGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSL 746


>gi|163838776|ref|YP_001623181.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
 gi|162952252|gb|ABY21767.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
          Length = 854

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 231/772 (29%), Positives = 381/772 (49%), Gaps = 33/772 (4%)

Query: 6   ISNS-NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +S+    ++ + ++ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + 
Sbjct: 1   MSDETGEIITDRIEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDG 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G     +F K AR+VGEV+G+ HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+   D
Sbjct: 61  GYRPDRSFNKCARVVGEVMGQYHPHGDSAIYDALVRLIQDWTMRYPLALGQGNFGSPGND 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE +M  +A  +++ +D+  VDF+D Y+ ++ EPV+ P++FPNLL NG+SGIA
Sbjct: 121 GAAAPRYTETKMAPLAMEMVRDIDKRTVDFQDNYDGKNQEPVILPARFPNLLVNGSSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN++E+ E A   + NP  S E+    L++ I GPDFPTG  I+   + I 
Sbjct: 181 VGMATNIPPHNLREVAEGAQWYLANPTASKEELLEALIQRIKGPDFPTGAQIL-GHKGIE 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA   VEE+ +   C+VVTE+PYQ     L  KIAEL+   +I  + D
Sbjct: 240 DAYRTGRGSITMRAVVNVEEI-QNRTCLVVTELPYQANPDNLAVKIAELVKDGKIGGIAD 298

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +RDE++    + ++    R     +++ +++  + ++  F  NM  +    VP+ + LD 
Sbjct: 299 LRDETSGRTGQRLVVVLKRDAVAKVVLNNLYKHTSLQDNFSANMLAIVD-GVPRTLSLDA 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-- 417
            ++ W+AH+ EV+ RR+ F +   + R  IL+GLL A   +DE+IA+IR           
Sbjct: 358 FIRHWVAHQMEVIVRRTRFLLNEAEARAHILRGLLKALDALDEVIALIRRSPTVDEARGG 417

Query: 418 -VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            +    + + QV+AIL+++LR L  LE  +I+ E   L  E  + +S+L S  +Q   ++
Sbjct: 418 LIDLLGIDDLQVNAILDMQLRRLAALERQKIQDENAKLELEIAEYNSILASEDRQRTIVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV------ISNRGWI 530
            E+ E+   F        RRT        D +       E+  +T+        +     
Sbjct: 478 EELAEIVNKFGDE-----RRTQIMLGYDGDMSMEDLIPEEEMVVTITRGGYVKRTRSDNY 532

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
           RS       +     +  D ++      T   +L  +  G+ Y   A  L+      +  
Sbjct: 533 RSQHRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELVEAGRDAKGQ 592

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            +  L+    ++ I              L++ +  G        +   N   G   + + 
Sbjct: 593 HVANLLAFQPDEKIAQVLDLKDYQQSPYLVLATKNGLVKKTRLEDYDTNRSAGVIAINLR 652

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVI 701
            E+++     V+  D + +V    + + F+     +  M R   GV    ++        
Sbjct: 653 DEDELVSAQLVSESDDMLLVSRKGQSIRFTATDEALRPMGRATSGVTGMKFRQDDELLAA 712

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + E           Y +           RGG+G  V K     G  + +
Sbjct: 713 NV-VTEDSYVFIVTEGGYAKRTAVEEYRTQGRGGLGIKVAKLVEDRGDLVGA 763



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 79/236 (33%), Gaps = 26/236 (11%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRIL 564
                ++ P  V+ +  G ++  +    D +        + ++ D L  A     +D +L
Sbjct: 611 DLKDYQQSPYLVLATKNGLVKKTRLEDYDTNRSAGVIAINLRDEDELVSAQLVSESDDML 670

Query: 565 LLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           L+S  G++    A +      G   +    +    + +++ A V      + +V+  G A
Sbjct: 671 LVSRKGQSIRFTATDEALRPMGRATSGVTGMKFRQDDELLAANVVTEDSYVFIVTEGGYA 730

Query: 624 FIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIP 679
                 E     R G   K    V     +   + V   D V VV E  K++  ++ ++P
Sbjct: 731 KRTAVEEYRTQGRGGLGIKVAKLVEDRGDLVGALIVQDDDEVLVVMEGGKVVRSNVAEVP 790

Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA---GRSYNRSENDLLGWLGK 732
              R                VI  K  +    I+ A    R     E +    L +
Sbjct: 791 AKGR------------DTMGVIFAKPDKNDRIIEVARNRERGLESEETEDEVPLTE 834


>gi|326778154|ref|ZP_08237419.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1]
 gi|326658487|gb|EGE43333.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1]
          Length = 879

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 236/768 (30%), Positives = 396/768 (51%), Gaps = 42/768 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 26  RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 85

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +
Sbjct: 86  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECK 145

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF+D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 146 MMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 205

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   +++PE S E+    L+E I GPDFPTG  +V  R+ I E+YR GRG   
Sbjct: 206 LREVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGA-LVVGRKGIEEAYRTGRGSIT 264

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +G  C+VVTE+P+Q     L +KIA+L+   ++  + D+RDE S+   +
Sbjct: 265 MRAVVAVEEI-QGRQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQ 323

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +D++T F  NM  L    VP+ + +D  ++ W+ H+ E
Sbjct: 324 RLVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GVPRTLSIDAFIRHWVTHQIE 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E Q
Sbjct: 383 VIVRRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLMGLLEIDELQ 442

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+  + + +L S  +Q   ++ E+  + + F 
Sbjct: 443 ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILASPAKQRAIVSEELAAIVDKFG 502

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                  RR+              + +I +E I V IS  G+++  K+            
Sbjct: 503 D-----DRRSQLVPFDGDMS---IEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKG 554

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           +     +E D +     + T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 555 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 614

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        Y++   L++ +  G        +  +    G   + +       +++
Sbjct: 615 PDEKIAQILAIRDYEAVPYLILATKGGLVKKTALKDYDSPRSGGVIAINLREMPEGGDDE 674

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           +     V+  D + ++ +  + + F+     +  M R   GV+  S+++G     +   +
Sbjct: 675 LIGAELVSAEDDLLLISKKAQSIRFTATDDALRPMGRATSGVKGMSFREGDELLSMNV-V 733

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             G     +    Y +        +  RGG+G    K     G  + +
Sbjct: 734 RPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 781


>gi|282863314|ref|ZP_06272373.1| DNA gyrase, A subunit [Streptomyces sp. ACTE]
 gi|282561649|gb|EFB67192.1| DNA gyrase, A subunit [Streptomyces sp. ACTE]
          Length = 871

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 230/760 (30%), Positives = 383/760 (50%), Gaps = 26/760 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 22  RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +
Sbjct: 82  ARVVGDVMGTYHPHGDSSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPAAAMRYTECK 141

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF+D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 142 MMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 201

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   +++PE S ++    L+E I GPDFPTG  +V  R  I ++YR GRG   
Sbjct: 202 LREVAAGAQWYLEHPEASPDELLDALIERIKGPDFPTGA-LVVGRNGIEDAYRTGRGSIT 260

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   +I  + D+RDE S+   +
Sbjct: 261 MRAVVAVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 319

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +D++T F  NM  L    VP+ + +D  ++ W+ H+ E
Sbjct: 320 RLVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GVPRTLSIDAFIRHWVTHQIE 378

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E Q
Sbjct: 379 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLLEIDEIQ 438

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+ ++ +++L S + Q   ++ E+  + + F 
Sbjct: 439 ANAILEMQLRRLAALERQKITAEHDELQAKIDQYNAILASPELQRKIVSEELAAIVDKFG 498

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                               A     +       V  +     RS K     +     +E
Sbjct: 499 DDRRSKLVPFEGDMSVEDLIAEEDIVVTISRGGYVKRTKTDDYRSQKRGGKGVRGTKLRE 558

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D +     + T   +L  +  G+ Y   A  L        G+ +  L+    ++ I   
Sbjct: 559 DDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEQIAQI 618

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEKMKLVVKVT 657
                YD+   L++ +  G        +  +    G   + +       ++++     V+
Sbjct: 619 LAIRDYDAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETESGADDELIGAELVS 678

Query: 658 -GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWID 713
             D + ++    + + F+     +  M R   GV+  S+++G     +   +  G     
Sbjct: 679 AEDDLLLISRKAQSIRFTATDDALRPMGRATSGVKGMSFREGDELLSMNV-VRPGTFVFT 737

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    Y +        +  RGG+G    K     G  + +
Sbjct: 738 ATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 777


>gi|167645708|ref|YP_001683371.1| DNA topoisomerase IV subunit A [Caulobacter sp. K31]
 gi|167348138|gb|ABZ70873.1| DNA topoisomerase IV, A subunit [Caulobacter sp. K31]
          Length = 759

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 377/740 (50%), Positives = 519/740 (70%), Gaps = 12/740 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +    L  AL +RYLAYALSTI  RA+PD+RDG KPVHRR++HAM+ M L+     +K
Sbjct: 15  DRILDEPLSEALSKRYLAYALSTIGSRALPDVRDGLKPVHRRVLHAMNNMRLNPEGGARK 74

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A++VGEV+G  HPHGDQS+YD+LVRLAQ F QR PL+ GQGNFGNIDGDSAAA RYTE 
Sbjct: 75  CAKVVGEVMGNFHPHGDQSIYDALVRLAQEFSQRVPLVDGQGNFGNIDGDSAAAMRYTEC 134

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +MT  A L+L G+DEDAVDF+ +Y+ +D EPVV PS FPNLLANG+SGIAVGMATSIP H
Sbjct: 135 KMTAAAVLLLDGIDEDAVDFKPSYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPH 194

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ +A L L+  PE +  ++LE + GPDFPTGG+IVESRES++E+Y  GRGG R RA
Sbjct: 195 NPAELIDACLLLLSKPEATTAEILERVPGPDFPTGGVIVESRESLLETYETGRGGVRTRA 254

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+ GRG++ IVVTEIPYQV+KS L+E++A+LI +K+  LL D+RDESAED+R+VL 
Sbjct: 255 KWEKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAEDIRLVLE 314

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+++++P++LMES+F LS +E+RFP+N+NVL     P VM +   L  +LAHRR+VL R
Sbjct: 315 PKSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALIAFLAHRRDVLTR 374

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R+  R+  I+ R+ IL GLLIAYLN+DE+I I+R ED+PK  +++ F+L++ Q DAILN 
Sbjct: 375 RARNRLSKIEARLHILDGLLIAYLNLDEVIRIVRYEDEPKQKLMAAFALSDIQADAILNT 434

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR L KLEE +I+ E   L+ E++ I ++L S K+QW+ +   +R+V+ +  K      
Sbjct: 435 RLRQLAKLEEMEIRREHAQLVEERDGILAMLASDKKQWDLVGTGLRQVRAVLLKIKHPLD 494

Query: 495 R---------RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +         R+ F +    D     +A+I +EPITV++S+RGWIR+ K    D S L F
Sbjct: 495 KTGRATGVIGRSVFEDAPVVDAEAALEALIVREPITVILSDRGWIRAAKGKVEDPSELKF 554

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           KEGD L   + A TTD++LL ++DG+ +T+   NL S RGHGE ++++I+L+    I+  
Sbjct: 555 KEGDKLGFLVPAETTDKLLLFTSDGRFFTIGCANLPSARGHGEPVRMMIELDDKVKIIDV 614

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           F + +  K  + S +G  F++ E E +AN + GK  L V +       ++  GD +AVVG
Sbjct: 615 FPFKAGRKRFLASKQGYGFLMPEEEALANRKAGKQVLTVDA-AGAAFCLEAVGDQLAVVG 673

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +N K+LIF ++++PEM RGKGV+LQSY++GG+ D I F    G  WID+AGR   R   +
Sbjct: 674 DNGKILIFPLEELPEMPRGKGVKLQSYREGGLRDAISFNADVGAFWIDTAGR--RRDWVE 731

Query: 726 LLGWLGKRGGVGSLVPKGFP 745
              W+GKR G G L PKGFP
Sbjct: 732 WRDWIGKRAGAGKLSPKGFP 751


>gi|163850485|ref|YP_001638528.1| DNA topoisomerase IV subunit A [Methylobacterium extorquens PA1]
 gi|163662090|gb|ABY29457.1| DNA topoisomerase IV, A subunit [Methylobacterium extorquens PA1]
          Length = 748

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 401/736 (54%), Positives = 532/736 (72%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M  + LD  +
Sbjct: 7   PPPSDGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTS 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           AFKK A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYR
Sbjct: 67  AFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+T+VA L+L G+DED VDFR +YN E  EP+V P+ FPNLLANG+ GIAVGMATS
Sbjct: 127 YTEARLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATS 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+C+AAL LI N E + E+L  ++ GPDFPTGGI+++S ESI E+YR GRGGF
Sbjct: 187 IPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGF 246

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RVRARW  E++GRG+W IVVTEIPY V K+RLIEK+A+L+  K++PLL D+RDESAEDVR
Sbjct: 247 RVRARWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVR 306

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL P++RS+DP +LMES+F LS++E+R PLN+NVL  G VP+V+ L   L+EW+ HRR 
Sbjct: 307 VVLEPRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLTECLREWVDHRRV 366

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RRSS+R+  I+RR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +A
Sbjct: 367 VLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANA 426

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+ RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I  +IR VK+ F   T
Sbjct: 427 ILDTRLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPET 486

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            LGRRRTT              AM+E+EPITV++S +GWIR+LK H  +L+ + FK  D+
Sbjct: 487 KLGRRRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVTELAGVAFKGDDT 546

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           LK+A  + TT +ILLL+++GK +T+ A  L  GRG G+ ++L++DL+   +IV A  Y  
Sbjct: 547 LKVAFLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKP 606

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
             KLLV  S G  FI     ++ANTRKGK  L +    +  L+V   GDHVAV   ++ +
Sbjct: 607 ESKLLVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLM 666

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L+F   ++ E+ RGKGVRLQ  +   ++D   F + EGL W D +G++   +   L  W+
Sbjct: 667 LVFPASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWM 726

Query: 731 GKRGGVGSLVPKGFPR 746
           G R   G+L+ + FP+
Sbjct: 727 GHRSDAGTLMTRSFPK 742


>gi|309379673|emb|CBX21662.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 912

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 242/848 (28%), Positives = 397/848 (46%), Gaps = 110/848 (12%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D PE  I++L++ I  PDFPTG  I      + E
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIY-GLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +RA+   E +G+      IV+ EIPYQV K++L+EKI EL+  K +  + 
Sbjct: 240 GYKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L+  +I     NL+ +      +L+  ++    I  E+ E+K  +              
Sbjct: 479 GLDREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDER--------LS 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V  S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSN 710

Query: 667 NRKLLIFSI--------------------------DQIPEMSRGK-GVRLQSY------- 692
             K + F+                           D    +  GK GVR           
Sbjct: 711 LGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMRG 770

Query: 693 ----KDGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                DG I  +I F       GL  + +    Y +           +GG G++      
Sbjct: 771 MRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 830

Query: 746 RSGKFLSS 753
           R+G  +++
Sbjct: 831 RNGDLVAA 838



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 11/134 (8%)

Query: 596 LNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
           L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E+ 
Sbjct: 773 LPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN 832

Query: 650 --MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFK 704
             +     V   D + ++     L+   ++QI E  R   GV+L +  +G  +  +    
Sbjct: 833 GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVA 892

Query: 705 ICEGLTWIDSAGRS 718
             E  T +      
Sbjct: 893 EEETETDMPETEAG 906



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 792 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 851

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 852 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 881


>gi|261400307|ref|ZP_05986432.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970]
 gi|269209927|gb|EEZ76382.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970]
          Length = 916

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 240/848 (28%), Positives = 397/848 (46%), Gaps = 110/848 (12%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG  I      + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +RA+   E +G+      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLSRSWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L+  +I     NL+ +      +L+  ++    I  E+ E+K  +              
Sbjct: 479 GLDREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDER--------LS 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V  S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSN 710

Query: 667 NRKLLIFSI--------------------------DQIPEMSRGK-GVRLQSY------- 692
             K + F+                           D    +  GK GVR           
Sbjct: 711 LGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMRG 770

Query: 693 ----KDGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                DG I  +I F       GL  + +    Y +           +GG G++      
Sbjct: 771 MRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 830

Query: 746 RSGKFLSS 753
           R+G  +++
Sbjct: 831 RNGDLVAA 838



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 596 LNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
           L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E+ 
Sbjct: 773 LPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN 832

Query: 650 --MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI--CF 703
             +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +    
Sbjct: 833 GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVA 892

Query: 704 KICEGLTWIDSA 715
           +  +     D++
Sbjct: 893 EDEDESELSDAS 904



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 792 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 851

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 852 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 881


>gi|313678347|ref|YP_004056087.1| DNA gyrase subunit A [Mycoplasma bovis PG45]
 gi|312950356|gb|ADR24951.1| DNA gyrase, A subunit [Mycoplasma bovis PG45]
          Length = 919

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 244/764 (31%), Positives = 406/764 (53%), Gaps = 32/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              ++ +  + +   ++  +L YA+S I  RA+PD RDG KPVHRRI++ MSE+G+  G 
Sbjct: 69  ETEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             +KSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPLI G GNFG+IDGD AAA R
Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMR 188

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++VA L+L+G+ +D VDF D Y+  + EP V PS+FPNLL +G SGIAVGMATS
Sbjct: 189 YTEARMSKVATLMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A +AL  NPEI+I +++E++ GPDFPTG +I    + I E+Y  G+G  
Sbjct: 249 IPPHNLAETIDATIALARNPEITIAEIMEFLPGPDFPTGAMI-MGTKGIKEAYETGKGSI 307

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR+   +E +  G   I+V+EIPY+++K+ +IEKIA+L+  K I  + D+RDES  +  
Sbjct: 308 SVRSIAKIEHLHNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIDGVADLRDESNRNGI 367

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +   P++++  ++  + +++ + +N   L     P+++ +   L+ +L H+  
Sbjct: 368 RIIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVD-GEPKLLNIKYALEVYLKHQEN 426

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR  F +     R+ IL+GL +A  NIDE+I II++       +  + +RF+L+E Q
Sbjct: 427 VVTRRLKFDLNKAQDRMHILEGLKLAVENIDEVIKIIKSSKTDQDAQNNLSARFNLSEKQ 486

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+++RL  L  L    +  E+ NL AE E+I S+L+  K     I  E+ E+K  F+
Sbjct: 487 TKAIVDMRLGRLTGLAIDSMIEEMKNLSAEIERIISILSDKKLLTELIIDELTEIKNKFA 546

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   +   A  +   + +I K  I +  S +G+++          +   V 
Sbjct: 547 D-----DRRTVIDKNLSA--SIDDEDLITKRDIVITTSTKGYVKRIDLEEYKTQRRGGVG 599

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----LI 594
           ++ +     D +   +   T   +L+ +  G+ Y + A  +       +          +
Sbjct: 600 ITTMKTYNDDDIASIITTTTHTDLLIFTNHGRVYRIRAHEIPELNRQSKGTSFINIIPRL 659

Query: 595 DLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            ++  + +++    D       L   +  G       SE       GK    +   +++ 
Sbjct: 660 KVDEGEKVISMLAVDEYSDNKYLFTATKLGIIKKTSLSEFQIININGKRAFNLKENDELI 719

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
               +  D  V +  + ++++ F  ++   +SR   GV+  +  D     +      EG 
Sbjct: 720 RASIINDDELVLLANDKQRIVKFHSNEFRALSRIATGVKGITLADDET-CISASSSSEGE 778

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      + +  +  L  L  RGG G +      ++G  + +
Sbjct: 779 LILTIGRNGFGKITHHSLFRLVHRGGKGVIGIN-SDKAGNLVFA 821



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMK 651
           I L  ++  ++A        +L +   G   I   S      R GK  + ++S++   + 
Sbjct: 760 ITLADDETCISASSSSEGELILTIGRNGFGKITHHSLFRLVHRGGKGVIGINSDKAGNLV 819

Query: 652 LVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
               V   D + ++  +   +   I  I +  R  KGV+L + K       +     E  
Sbjct: 820 FARFVNPHDEILMITTSGFTIRIPIKDINQTGRATKGVKLINLKKKEQIQAVEIVKLEND 879

Query: 710 TWIDSA 715
           + ID  
Sbjct: 880 SSIDET 885


>gi|295394841|ref|ZP_06805054.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972174|gb|EFG48036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 882

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 233/780 (29%), Positives = 384/780 (49%), Gaps = 38/780 (4%)

Query: 2   GVDN-ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           G D+   ++  +V   V+ V L   ++  YL YA+S I  RA+PD RDG KPVHRR+++A
Sbjct: 7   GEDHTPEDAQGVVASRVEKVDLNLEMQRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYA 66

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G      + K +R+VG+V+G+ HPHGD ++YD+LVRL QP+  RYPLI GQGNFG+
Sbjct: 67  MYDGGYRPDRNYSKCSRVVGDVMGQYHPHGDSAIYDALVRLVQPWAMRYPLIDGQGNFGS 126

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA RYTE +M  ++  +++ ++ED VDF+D Y+  + EPV  P++FPNLL NG+
Sbjct: 127 AGNDGAAAPRYTECKMAPLSLEMVRDIEEDTVDFQDNYDGRNQEPVYLPARFPNLLVNGS 186

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESR 236
           +GIAVGMAT+IP HN++E+   A  L+ +P+ + ++ LE     I GPDFP G  I+  R
Sbjct: 187 AGIAVGMATNIPPHNLREVAAGAQWLLAHPDATNDEALEALLGIIKGPDFPNGATIL-GR 245

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I ++YR GRG    RA   VEE+ +G  C+VVTE+PY V    L  KIA  +   ++ 
Sbjct: 246 KGIEDAYRTGRGSITQRAVVEVEEI-QGRTCLVVTELPYMVNPDTLANKIASYVKDGKVA 304

Query: 297 LLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + D+RDES+    + ++    R     +++ +++  + ++  F  NM  L    VP+ +
Sbjct: 305 GIADLRDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFSANMLALVD-NVPRTL 363

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            +D  L+ W+ H+ +V+ RR+ FR++  + R  IL+G L A   +DE+IA+IR       
Sbjct: 364 SIDAFLRLWVKHQIDVIVRRTRFRLKKAEERAHILRGYLKALSALDEVIALIRRSPSSDE 423

Query: 416 VMVSRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                     + E Q +AIL+L+LR L  LE  +I+ E   +    +  + +L +  +Q 
Sbjct: 424 ARTGLMELLDVDEIQANAILDLQLRRLAALERLKIEEEAQKIEELIKDYNEILATPARQR 483

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV------ISN 526
             ++ E+  V + +        RRT        D +       E+  +T+        + 
Sbjct: 484 EIVSEELDAVVQRYGD-----DRRTKILAGFDGDVSMEDLIPEEEVVVTITRGGYAKRTQ 538

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
               R+       ++    +  D ++      T + +L  +  G+ Y   A  L  G   
Sbjct: 539 SALYRAQHRGGKGITGARLRGDDVVEQFFVTSTHNWLLFFTNTGRVYRAKAYELPEGMRD 598

Query: 587 GE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            +   +  L+ L  +++I        YD+   L++ +  G       SE  +N   G   
Sbjct: 599 AKGQHVANLLALQPDEEIAEVLSIPDYDAAQYLMLATKSGLVKKTRLSEYDSNRTGGVIA 658

Query: 642 LKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSY 692
           + +        +++     V   DH+ +V      + F+ D   I    R   GV    +
Sbjct: 659 INLREMADGKSDELVSARLVDAEDHLLLVSRKGMSIRFAADDSTIRPTGRATSGVTGMKF 718

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           K G  + +    +  G          + +        L  RGG G  V K   + G  + 
Sbjct: 719 K-GEDTLLTMDVVTPGTYVFVVTEAGFAKRTPVEEYRLQGRGGFGIKVAKITEQRGDLVG 777



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 7/160 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRG-HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           D +LL+S  G +    A +          +    +       ++T  V      + VV+ 
Sbjct: 682 DHLLLVSRKGMSIRFAADDSTIRPTGRATSGVTGMKFKGEDTLLTMDVVTPGTYVFVVTE 741

Query: 620 KGNAFIVEESEIIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
            G A      E     R G      K++    + +  ++   GD V VV E  K++   I
Sbjct: 742 AGFAKRTPVEEYRLQGRGGFGIKVAKITEQRGDLVGGLIVSEGDDVFVVMEMGKVVRSKI 801

Query: 676 DQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDS 714
           D++P   R   GV             +  +  E    +D 
Sbjct: 802 DEVPAKGRNTMGVVFAKPGKKDRIIAVT-RGPEAEDILDE 840


>gi|33863395|ref|NP_894955.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9313]
 gi|33640844|emb|CAE21299.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
          Length = 875

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 231/789 (29%), Positives = 391/789 (49%), Gaps = 59/789 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  + PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +  + +L+ ++ + VD+ D ++    EP+V P++ P LL NG+SGIAVGMAT+I
Sbjct: 135 ESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLLNGSSGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +   ALI NPE+S  +L+  I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 195 PPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQIL-GRSGIRETYLTGRGSVT 253

Query: 252 VRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++TE+PYQ  K+ LIE+IAE++  K++  + DIRDES  
Sbjct: 254 MRGVANIETIEHPGRADRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  +M  L     P ++ L  +L+ +L  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALV-NGEPVLLTLRKMLQVFLDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLT 424
           R + + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +     LT
Sbjct: 373 RVDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQEHHGLT 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ +++E
Sbjct: 433 EIQADAILQMQLRRLTALEADKIRLEHEDLVTKIANYKDILGRRERVFGLIEDELTKLRE 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SH 536
                     RRT   ++    +      +I  E   V+++  G+++ +           
Sbjct: 493 KHCLP-----RRTEILDLGGGLEDI---DLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
           +   +    +  +++K+ +  +  D +LL S  G +Y LPA  +       +   +  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I    +   +D    LL+++  G       S        G   + +   + + 
Sbjct: 605 PIPREEAITSLLSVISFDDDTHLLMLTKGGFIKRTSLSAFSKIRSNGLIAIGLEEGDALT 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGGISDVI------ 701
            V   V GD V +       + F +  +++  + R  +GVR  + + G     +      
Sbjct: 665 WVRLAVPGDSVLIASRAGMTIHFRLCDEELRPLGRTARGVRAMNLRGGDSLVSMDVLPVE 724

Query: 702 ------------------CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                + +G   + ++     +        L KR G+G    K 
Sbjct: 725 LADQVAKSLEDDQDESGETVVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKF 784

Query: 744 FPRSGKFLS 752
                + + 
Sbjct: 785 RREGDELVG 793



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVS-SEEKMKLVVKVT-GDHV 661
            V      +LV S+ G    V  ++     R G     +K     +++  +  +  G+ +
Sbjct: 744 VVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKFRREGDELVGLRVLGYGEEL 803

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
            +V E   ++  S D+IP+ SR   GVRLQ    G     +     +   
Sbjct: 804 LLVSERGVIVRTSADKIPQQSRAATGVRLQRLDAGDRLSEVVLVPPDSED 853


>gi|254244148|ref|ZP_04937470.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 2192]
 gi|126197526|gb|EAZ61589.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 2192]
          Length = 754

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 273/757 (36%), Positives = 437/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++ +L E++ GPDFPT   I+  R  + + Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IV+  +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IVIQALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM  +F  +D+ET + +N+N++ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF 
Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S  +    +  E+ + 
Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEARALSETELM-PTEPVTVVLSEKGWVRCAKGHDIDAAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y+LPA +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +   +     V     D
Sbjct: 590 ECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F +  +P++ +GKG ++       ++        +          + 
Sbjct: 650 WLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+ +   +DL  + G+RG  G+ +P+GF R    
Sbjct: 710 AGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSL 746


>gi|119025024|ref|YP_908869.1| DNA gyrase subunit A [Bifidobacterium adolescentis ATCC 15703]
 gi|118764608|dbj|BAF38787.1| DNA gyrase (topoisomerase II) A subunit [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 886

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 228/771 (29%), Positives = 377/771 (48%), Gaps = 27/771 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++   +V E V+   L+  + E YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + G 
Sbjct: 12  TDYGLMVGERVQKKDLQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGY 71

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D A
Sbjct: 72  RPDRGYSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPA 131

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVG
Sbjct: 132 AAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVG 191

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ E     +D+P+ S E+    L+  I GPDFPTG  I+   + I ++
Sbjct: 192 MATNIPPHNMREVAEGVHWALDHPDASREELLDNLIRIIKGPDFPTGATIL-GHKGIEQA 250

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+V+TE+PYQV   RL+  I E +   +I  + D+R
Sbjct: 251 YRTGRGLITMRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMR 309

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  +
Sbjct: 310 DETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFI 368

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + W+ H+ EV+ RR+++  +  + R  IL+G L A   IDE+IA+IR  +  +       
Sbjct: 369 RHWVNHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM 428

Query: 422 ---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + E Q DAIL ++LR L  LE  +I  E + L+ +    + +L   ++Q   +  E
Sbjct: 429 DLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPERQRKIVGDE 488

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+   +           +         A     +       +  +     R+      
Sbjct: 489 LDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKRTKADEYRAQHRGGK 548

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y L A  L  G    +   +  L+  
Sbjct: 549 GIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVANLLQF 608

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I T      YD    L++ +  G       +E  +  + G   +++ ++      
Sbjct: 609 GPDETIQTVLSIPNYDVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLMTDENGENA 668

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVI-C 702
           +++         D + +V +    L F  +   +  M R   GV+   ++DG     +  
Sbjct: 669 DELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQTAGVQGMKFRDGDELLAMDV 728

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +       +      + +        L  R G G    +     G  + +
Sbjct: 729 VQGDSDRDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGRGSLVGA 779


>gi|26991590|ref|NP_747015.1| DNA topoisomerase IV subunit A [Pseudomonas putida KT2440]
 gi|24986679|gb|AAN70479.1|AE016689_7 DNA topoisomerase IV, A subunit [Pseudomonas putida KT2440]
          Length = 752

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 278/757 (36%), Positives = 437/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  V +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +IE+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTLLV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR E+ PK  ++ RF 
Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQALIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    +L+ + G++Y+L A +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     +V S  G  F+V+  ++ A  + GK  L + +  K+     V     D
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F +  +P++ +GKG ++       ++        +          + 
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAVIPEGATLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+ +   +DL  + G+RG  GS +P+GF R    
Sbjct: 710 AGKRTLSLKADDLEHYKGERGRRGSKLPRGFQRVDGL 746


>gi|218529182|ref|YP_002419998.1| DNA topoisomerase IV subunit A [Methylobacterium chloromethanicum
           CM4]
 gi|218521485|gb|ACK82070.1| DNA topoisomerase IV, A subunit [Methylobacterium chloromethanicum
           CM4]
          Length = 748

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 402/736 (54%), Positives = 532/736 (72%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M  + LD  +
Sbjct: 7   PPPSDGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTS 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           AFKK A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYR
Sbjct: 67  AFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+T+VA L+L G+DED VDFR +YN E  EP+V P+ FPNLLANG+ GIAVGMATS
Sbjct: 127 YTEARLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATS 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+C+AAL LI N E + E+L  ++ GPDFPTGGI+++S ESI E+YR GRGGF
Sbjct: 187 IPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGF 246

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RVRARW  E++GRG+W IVVTEIPY V K+RLIEK+A+L+  K++PLL D+RDESAEDVR
Sbjct: 247 RVRARWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVR 306

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL P++RS+DP +LMES+F LS++E+R PLN+NVL  G VP+V+ L   L+EW+ HRR 
Sbjct: 307 VVLEPRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECLREWVDHRRV 366

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RRSS+R+  I+RR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +A
Sbjct: 367 VLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANA 426

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+ RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I  +IR VK+ F   T
Sbjct: 427 ILDTRLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPET 486

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            LGRRRTT              AM+E+EPITV++S +GWIR+LK H  +L+ + FK  D+
Sbjct: 487 KLGRRRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVTELAGVAFKGDDT 546

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           LK+A  + TT +ILLL+++GK +TL A  L  GRG G+ ++L++DL+   +IV A  Y  
Sbjct: 547 LKVAFLSETTAKILLLASNGKVFTLEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKP 606

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
             KLLV  S G  FI     ++ANTRKGK  L +    +  L+V   GDHVAV   ++ +
Sbjct: 607 ESKLLVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLM 666

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L+F   ++ E+ RGKGVRLQ  +   ++D   F + EGL W D +G++   +   L  W+
Sbjct: 667 LVFPASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWM 726

Query: 731 GKRGGVGSLVPKGFPR 746
           G R   G+L+ + FP+
Sbjct: 727 GHRSDAGTLMTRSFPK 742


>gi|209549340|ref|YP_002281257.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535096|gb|ACI55031.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 941

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 244/841 (29%), Positives = 399/841 (47%), Gaps = 115/841 (13%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKYHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALI++P I +  L++ I GPDFPTG  I+  R  I  +Y  GRG   +R   
Sbjct: 196 SEVIDGCIALINDPAIELPDLMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  ++  + ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+
Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------------------ 412
            F ++    R  +L GL IA  NIDE+I +IR                            
Sbjct: 374 KFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433

Query: 413 -----PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                 +      ++L+E Q  AIL LRL  L  L   +I  EL+ +  E +    +L+S
Sbjct: 434 IDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   +          + +I +E + V +S+ 
Sbjct: 494 RVRIQTIVKDELIAVRDEFGTP-----RRTEIVDGGLEMD---DEDLIAREDMVVTVSHL 545

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  ++ D +      +T   +L  S+ G  Y      
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L   +    G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 606 LPIGTPTSRGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDF 665

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + FS+D +     R   GV
Sbjct: 666 VQVNRNGKIAMKLEEEGDEILSVETCTESDDVLLTTALGQCIRFSVDDVRVFAGRNSIGV 725

Query: 688 RLQSYKDGGISDVICFK---------------------------------ICEGLT---- 710
           R  S   G     +                                    + E +T    
Sbjct: 726 RGISLAGGDRIISMTIVRHVNAEPWERAAYLKRAANDRRLTTGEAEEIALVGEEVTEEGQ 785

Query: 711 ---------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLS 752
                           +  + + + +  +     +  RGG G        ++   G+ ++
Sbjct: 786 LSDERYEELKQLEQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTS-KTGEIGELVA 844

Query: 753 S 753
           +
Sbjct: 845 A 845



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        +   + R GK        K     ++     V  GD + +V
Sbjct: 798 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDV 700
            +  +L+   +  I   SR  KGV + S  KD  +  V
Sbjct: 858 SDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSV 895


>gi|313500891|gb|ADR62257.1| ParC [Pseudomonas putida BIRD-1]
          Length = 752

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 278/757 (36%), Positives = 437/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  V +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATVEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  IL 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTILV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR E+ PK  ++ RF 
Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQALIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    +L+ + G++Y+L A +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     +V S  G  F+V+  ++ A  + GK  L + +  K+     V     D
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F +  +P++ +GKG ++       ++        +          + 
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAVIPEGATLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+ +   +DL  + G+RG  GS +P+GF R    
Sbjct: 710 AGKRTLSLKADDLEHYKGERGRRGSKLPRGFQRVDGL 746


>gi|120555698|ref|YP_960049.1| DNA topoisomerase IV subunit A [Marinobacter aquaeolei VT8]
 gi|120325547|gb|ABM19862.1| DNA topoisomerase IV subunit A [Marinobacter aquaeolei VT8]
          Length = 768

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 281/757 (37%), Positives = 449/757 (59%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T  +E  + VSLR   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+G
Sbjct: 1   MPEFQT-TDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   
Sbjct: 60  LKSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+   AE++L  + +  VD+   ++    EP V P++ P++L NGT+GIA
Sbjct: 120 SFAAMRYTESRLAPFAEVLLSELGQGTVDWVPNFDGTMEEPSVLPARLPHVLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A + L+D P+ S+++L E+I GPDFPT   I+  R+ + + Y 
Sbjct: 180 VGMATDIPPHNVREVTAACIRLLDQPDASVDELCEHIKGPDFPTRAEIITPRKDLRQMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RARW + E G     +V+T++P+QV  +R++E+IA+ +  K++P++ D+RDE
Sbjct: 240 TGRGSLRMRARW-IRENGE----VVITDLPHQVSGNRVLEQIAQQMQTKKLPMVADLRDE 294

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  + +N+NV+     P V  L  IL 
Sbjct: 295 SDHENPTRLVIVPRSNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLYTILT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA R+  + RR   R+  +  R+ +L+GLLIAYLNIDE+I IIR EDKPK  +++RF 
Sbjct: 355 EWLAFRKTTVTRRLQHRLDKVLARLHLLEGLLIAYLNIDEVIEIIRTEDKPKAELMARFG 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q +AIL L+LR L KLEE +I+ E D L AE++++ ++L S  +    I  E+ + 
Sbjct: 415 LSAEQAEAILELKLRHLAKLEEMKIRGEQDELSAERDELQAILGSEDRLRELIKTELEQD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E F        RR+   E   A +A  +  ++  +P+TVV+S++GW+R+ K H +D + 
Sbjct: 475 AETFGD-----DRRSPIVEREEA-RAFSETDLVSNDPVTVVLSDKGWVRAAKGHDIDPAG 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD   +A       + + L + G+AY+L A +L S RG GE +   I+       
Sbjct: 529 LSYKSGDRFALAAKGRNNQQAIFLDSTGRAYSLMAHSLPSARGQGEPLTGRINPPSGATF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--- 659
               + +   K L+V+  G  F+   +++I+  R GK  + V    ++   V +      
Sbjct: 589 SGLLMGNPERKTLLVTDGGYGFVTSLNDMISKNRAGKAVVSVPKGARIMPPVMIPETAST 648

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTW 711
            ++A +    ++L+F + ++PE+++GKG ++ S        ++  +  V  F   + L  
Sbjct: 649 LYLAAISNEGRMLVFPLSELPELAKGKGNKIISIPSARVQNREEYVVAVAVFGEEDQLEV 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             +  R       DL  +LG+RG  G  +P+G  R  
Sbjct: 709 K-AGKRKLGLRFGDLEHYLGERGRRGHKLPRGLQRVD 744


>gi|330501588|ref|YP_004378457.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina NK-01]
 gi|328915874|gb|AEB56705.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina NK-01]
          Length = 749

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 274/757 (36%), Positives = 440/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++   +EP   P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTMNEPATLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++E+L E++ GPDFPT   ++  +  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPSATVEQLCEHVEGPDFPTEAEVITPKADLLKLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM  +F  +D+E+ + +N NV+ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDADELMTHLFATTDLESSYRVNTNVIGLDGKPQVKDLRTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  FR+  +++R+ +L+GLLIA+LN+DE+I IIR ED PKPV++  F 
Sbjct: 356 EWLVYRVGTVRRRLQFRLDKVEKRLHLLEGLLIAFLNLDEVIRIIRTEDSPKPVLMETFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q D IL+ RLR L +LEE +I+ E D L  E+EK+ +LL+S  +    +  EI E 
Sbjct: 416 LTDVQADYILDTRLRQLARLEEMKIRGEQDELAKEREKLLALLSSEAKLKKLVRKEILED 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AEKYGD-----DRRSPIVARAEAKALSETELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y+L A +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLTAHSLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
               + + +   ++ S  G  F+V+  ++ A  + GK  L + +  K+     V     D
Sbjct: 590 ECVMLPEDSALYVIASDAGYGFVVKGEDLQAKNKAGKALLTLPNGAKVVAPKPVNNLEDD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F +  +P++ +GKG ++       ++        +          + 
Sbjct: 650 WLAAVTTEGRLLLFKVTDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPSGSSLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+     +DL  + G+RG  G+ +P+GF R  + 
Sbjct: 710 AGKRTLTLKADDLEHYKGERGRRGNKLPRGFQRVDQL 746


>gi|269793365|ref|YP_003312820.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542]
 gi|269095550|gb|ACZ19986.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542]
          Length = 883

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 231/777 (29%), Positives = 388/777 (49%), Gaps = 42/777 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            N   +    +++V L+  ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G 
Sbjct: 17  ENGLAIEHGRIQSVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGY 76

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               AF K +R+VG+V+GK HPHGD ++YD+LVRL Q +  RYPL++GQGNFG+   D A
Sbjct: 77  RPDRAFSKCSRVVGDVMGKFHPHGDTAIYDALVRLVQDWSLRYPLVAGQGNFGSPGNDPA 136

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF+D Y+    EP + PS+FPNLL NG+SGIAVG
Sbjct: 137 AAPRYTECRMAPIAMEMVRDIDKDTVDFQDNYDGRTQEPSILPSRFPNLLVNGSSGIAVG 196

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ E     +D+P+ S E++    +  I GPDFPTG  I+     I ++
Sbjct: 197 MATNIPPHNLREVAEGVQWYLDHPDASPEEVLDSLIRIIKGPDFPTGATIL-GHRGIEDA 255

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA   VEE+ +   C+VVTE+PYQV    L  KIAEL+   R+  + DIR
Sbjct: 256 YRTGRGSITMRAIVNVEEI-QNRICLVVTELPYQVNPDTLALKIAELVKDGRVQGIADIR 314

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R     +++ +++  + ++  F  NM  L    VP+ + +D  +
Sbjct: 315 DETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFGANMLALVD-GVPRTLSIDAFI 373

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMV 418
           + W+AH+ EV+ RR++F ++  + ++ I +G L A   +D++IA+IR        +  ++
Sbjct: 374 RHWVAHQLEVIVRRTAFLLREAESKIHIFRGYLKALDRLDDVIALIRRSPDADRARQGLI 433

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + E Q  AILN++LR L  L+  +I  E D L  E  +   +L    +Q   ++ E
Sbjct: 434 EMLDIDEIQATAILNMQLRRLAALQRQEIIDEHDKLEKEILEYQDILAKESRQRQIVSDE 493

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           + E+   +        RRTT    +        + +I +E + V I+  G+ +       
Sbjct: 494 LNELVAKYGDE-----RRTTVLPHAGE---VSMEDLIAEEEMVVTITRGGYAKRTRSDNY 545

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
              K     +     +E D +       T   +L  +  G+ Y   A  L  G    +  
Sbjct: 546 RAQKRGGKGVRGAQLREDDIVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGGRDAKGQ 605

Query: 589 AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            +  L+     + I        YD    L++ + +G       SE  +N   G   + + 
Sbjct: 606 HVANLLAFQPGEKIAQVLDLRDYDVADYLVLATRRGTVKKTRLSEYDSNRSGGVIAINLR 665

Query: 646 SE-----EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGG 696
            +     +++     V   D + +V    + + F+     +  + R   GV    +++  
Sbjct: 666 EDADGQPDELVSARLVDATDDLILVSRKGQSIRFTASDEAMRPLGRATSGVTGMKFREDD 725

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +   + +G          + +  +     +  RGG+G  V       G  + +
Sbjct: 726 ELLAMDV-VRDGAHLFVVTEGGFAKRTSVDEYRVQGRGGLGIKVANLVEARGDLVGA 781



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 3/139 (2%)

Query: 520 ITVVISNRGWIRSLKSH-SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            ++  +            +  ++ + F+E D L           + +++  G A      
Sbjct: 695 QSIRFTASDEAMRPLGRATSGVTGMKFREDDELLAMDVVRDGAHLFVVTEGGFAKRTSVD 754

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTR 636
                   G  I++   +    D+V A V D   ++LV+  +G       ++  +   T 
Sbjct: 755 EYRVQGRGGLGIKVANLVEARGDLVGALVTDEDDEVLVIMERGKIVRSAVNQVHLTGRTT 814

Query: 637 KGKTFLKVSSEEKMKLVVK 655
           +G TF K    +++  V +
Sbjct: 815 QGVTFAKPDKNDRIIAVAR 833


>gi|254516085|ref|ZP_05128145.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR5-3]
 gi|219675807|gb|EED32173.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR5-3]
          Length = 749

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 282/757 (37%), Positives = 447/757 (59%), Gaps = 24/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++++ ++ ++ +SL+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDTSSIDDDGIEGISLKQYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G  D   
Sbjct: 61  LKSTAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T  A+++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTESRLTAYADVLLGELGQGTVDWVPNFDGTMDEPSLLPAQVPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  AA+ L+D P+ S+ +L E I GPDFPT   I+   + I + Y 
Sbjct: 181 VGMATDIPPHNLREVVTAAITLLDAPKTSLAELCEIIKGPDFPTEAEIITPPQDIAQIYA 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W +E        IVV+ +P+Q   SR++E+IA+ + AK++P++ D+RDE
Sbjct: 241 TGRGSLRMRAVWELEHGD-----IVVSALPHQASGSRVLEQIAQQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N++     P V  LDGIL 
Sbjct: 296 SDHENPTRLVIVPRSNRIDREGLMSHLFATTDLERTYRVNLNMIGTDGRPGVRSLDGILN 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           +WL  RR+ + RR S+R++ ++RR+ IL+G L+AYLNIDE+I IIR E+ PK  ++ RF 
Sbjct: 356 QWLKFRRDTVRRRLSYRLERVERRLHILQGYLVAYLNIDEVIHIIRTEEHPKQALMQRFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +++ Q +AIL L+LR+L KLEE +I+ E D L  E+E ++  L S  +    I  E+  +
Sbjct: 416 ISDVQAEAILELKLRNLAKLEEMKIRGEQDELEKEREWLEKTLGSDARLKTLIKKELTAI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+       A   +  + M    PITVV+S +GWIR+ K H +D + 
Sbjct: 476 AEKYGD-----DRRSPLASREEARAFSELELMTAD-PITVVLSEKGWIRAAKGHDMDPAT 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS K+A    +    +++ + G+AYTL   NL S RG GE +   I+       
Sbjct: 530 LSYKSGDSFKLAARGRSNQPAVIIDSTGRAYTLATHNLPSARGQGEPLTGRINPPSGAGF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DH 660
               + D+  + L+ S  G  F+   +E+    R GK  L + +  K+   V +      
Sbjct: 590 DGLMMGDNEQRCLLASDAGYGFVTTLAELQTKNRAGKAALSLPAGAKVVSPVPINEGAQW 649

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWID 713
           VA V    +LL+F +  +P +SRGKG ++ +        ++  +      K  +GLT   
Sbjct: 650 VAAVSNEGRLLLFPLADLPSLSRGKGNKIIAIPGPRARDREEYVVATAVLKDDDGLTV-W 708

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R       +L  + G+RG  G+ +P+GF R  + 
Sbjct: 709 AGKRHLTLKRAELDHYRGERGRRGNKLPRGFQRVERM 745


>gi|21222281|ref|NP_628060.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)]
 gi|19858823|sp|P35885|GYRA_STRCO RecName: Full=DNA gyrase subunit A
 gi|8247655|emb|CAB92993.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)]
          Length = 857

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 231/769 (30%), Positives = 380/769 (49%), Gaps = 26/769 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +     +   V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G 
Sbjct: 3   TPEGDALAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGY 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D A
Sbjct: 63  RPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPA 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE +M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVG
Sbjct: 123 AAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+   A   ++N E S E+    L+E I GPDFPTG  +V  R+ I E+
Sbjct: 183 MATNIPPHNLREVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGA-LVVGRKGIEEA 241

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   ++  + D+R
Sbjct: 242 YRTGRGSITMRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVR 300

Query: 303 DE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE S+   + ++    R     +++ +++  +D+++ F  NM  L    VP+ + LD  +
Sbjct: 301 DETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVD-GVPRTLSLDAFI 359

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D  +       
Sbjct: 360 RHWVNHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLM 419

Query: 422 S---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + E Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  +Q   ++ E
Sbjct: 420 DLLEIDEIQANAILEMQLRRLAALERQKIVREHDELQAKITEYNEILASPVRQRGIVSEE 479

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +  + E +                     A     +       +  +     R+ K    
Sbjct: 480 LTALVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGK 539

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +     KE D +     + T   +L  +  G+ Y   A  L        G+ +  L+  
Sbjct: 540 GVRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAF 599

Query: 597 NHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EE 648
             ++ I        Y++   L++ +  G        +  +    G   + +       ++
Sbjct: 600 QPDETIAQIRAIRDYEAVPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLREQADGSDD 659

Query: 649 KMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFK 704
           ++     V+  D + ++ +  + + F+     +  M R   GV+  S+++G     +   
Sbjct: 660 ELIGAELVSAEDDLLLISKKAQSIRFTASDDTLRPMGRATSGVKGMSFREGDELLSMNVV 719

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              G     +    Y +  +     +  RGG+G    K     G  + +
Sbjct: 720 RA-GTFVFTATDGGYAKRTSVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 767


>gi|154486352|ref|ZP_02027759.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis
           L2-32]
 gi|154084215|gb|EDN83260.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis
           L2-32]
          Length = 904

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 228/771 (29%), Positives = 377/771 (48%), Gaps = 27/771 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++   +V E V+   L+  + E YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + G 
Sbjct: 30  TDYGLMVGERVQKKDLQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGY 89

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D A
Sbjct: 90  RPDRGYSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPA 149

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVG
Sbjct: 150 AAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVG 209

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ E     +D+P+ S E+    L+  I GPDFPTG  I+   + I ++
Sbjct: 210 MATNIPPHNMREVAEGVHWALDHPDASREELLDNLIRIIKGPDFPTGATIL-GHKGIEQA 268

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+V+TE+PYQV   RL+  I E +   +I  + D+R
Sbjct: 269 YRTGRGLITMRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMR 327

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  +
Sbjct: 328 DETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFI 386

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + W+ H+ EV+ RR+++  +  + R  IL+G L A   IDE+IA+IR  +  +       
Sbjct: 387 RHWVNHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM 446

Query: 422 ---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + E Q DAIL ++LR L  LE  +I  E + L+ +    + +L   ++Q   +  E
Sbjct: 447 DLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPERQRKIVGDE 506

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+   +           +         A     +       +  +     R+      
Sbjct: 507 LDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKRTKADEYRAQHRGGK 566

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y L A  L  G    +   +  L+  
Sbjct: 567 GIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVANLLQF 626

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I T      YD    L++ +  G       +E  +  + G   +++ ++      
Sbjct: 627 GPDETIQTVLSIPNYDVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLMTDENGENA 686

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVI-C 702
           +++         D + +V +    L F  +   +  M R   GV+   ++DG     +  
Sbjct: 687 DELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQTAGVQGMKFRDGDELLAMDV 746

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +       +      + +        L  R G G    +     G  + +
Sbjct: 747 VQGDSDRDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGRGSLVGA 797


>gi|146305636|ref|YP_001186101.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina ymp]
 gi|145573837|gb|ABP83369.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina ymp]
          Length = 749

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 277/757 (36%), Positives = 441/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++   +EP   P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTMNEPATLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++E+L E+I GPDFPT   ++  +  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPGATVEQLCEHIQGPDFPTEAEVITPKADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSVRMRAVYRVEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM  +F  +D+E+ + +N NV+ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDADELMTHLFATTDLESSYRVNTNVIGLDGKPQVKDLRTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  FR+  +++R+ +L+GLLIA+LN+DE+I IIR ED+PKPV++  F 
Sbjct: 356 EWLVYRVGTVRRRLQFRLDKVEKRLHLLEGLLIAFLNLDEVIRIIRTEDQPKPVLMEAFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL+ RLR L +LEE +I+ E D L  E+EK+ +LL S  +    +  EI E 
Sbjct: 416 LTEVQADYILDTRLRQLARLEEMKIRGEQDELAKEREKLLALLGSEAKLKKLVRKEIIED 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AEKYGD-----DRRSPIVARAEARALSETELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y+L A +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
               + + +   ++ S  G  F+V+  ++ A  + GK  L + +  K+     VT    D
Sbjct: 590 ECVMLPEDSALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVVAPKPVTNLEDD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F +  +P++ +GKG ++       ++        +          + 
Sbjct: 650 WLAAVTTEGRLLLFKVTDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPSGASLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+     +DL  + G+RG  G+ +P+GF R  + 
Sbjct: 710 AGKRTLTLKADDLEHYKGERGRRGNKLPRGFQRVDQL 746


>gi|220910790|ref|YP_002486099.1| DNA gyrase subunit A [Arthrobacter chlorophenolicus A6]
 gi|219857668|gb|ACL38010.1| DNA gyrase, A subunit [Arthrobacter chlorophenolicus A6]
          Length = 876

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 225/770 (29%), Positives = 387/770 (50%), Gaps = 36/770 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              ++ + V+ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 21  EGDVLIDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRP 80

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             +F K AR+VGEV+G+ HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+   D AAA
Sbjct: 81  DRSFNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAA 140

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +++ +DE+ VDF+D Y+ ++ EP + P++FPNLL NG+SGIAVGMA
Sbjct: 141 PRYTETKMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGIAVGMA 200

Query: 189 TSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           T+IP HN++E+ +     + NP    E  +E+LL  + GPDFPTG  I+   + I ++YR
Sbjct: 201 TNIPPHNLREVADGVQWYLANPAATREELLEELLRRVKGPDFPTGATIL-GHKGIEDAYR 259

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA   VEE+ +   C+VVTE+PYQ     L  KIAEL+   +I  + D+RDE
Sbjct: 260 TGRGSVTMRAVVNVEEL-QNRTCLVVTELPYQANPDNLAIKIAELVKDGKIQGIADLRDE 318

Query: 305 SA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++    + ++    R     +++ +++  +++++ F  NM  +    VP+ + LD  ++ 
Sbjct: 319 TSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIVD-GVPRTLSLDAFIRH 377

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF-- 421
           W+ H+ +V+ RR+ +R++  +    IL+ LL A   +DE+IA+IR  +  +         
Sbjct: 378 WVTHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAARDGLMEL 437

Query: 422 -SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q  AIL+++LR L  LE  +I+     L A   + +++L S ++Q   I+ E+ 
Sbjct: 438 LDIDELQARAILDMQLRRLAALERQKIQDRHSELEALIAEYNAILASEERQREIISTELG 497

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-- 538
           E+ +          RRT        D     + +I +E + V I+  G+++  +S +   
Sbjct: 498 EIVDKHGD-----DRRTKIL--MGFDGDMSMEDLIPEEEMVVTITRGGYVKRTRSDNYRS 550

Query: 539 ------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AI 590
                  +     +  D ++      T   +L  +  G+ Y   A  L+      +   +
Sbjct: 551 QQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELMEAGRDAKGQHV 610

Query: 591 QLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+    ++ I              L++ + +G        +   N   G   + +   
Sbjct: 611 ANLLAFQPDEHIAQVLDLKDYQQSPYLVLATKRGLVKKTRLEDYDTNRSAGVIAINLRDG 670

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICF 703
           +++     V+  D + +V    + + F+     +  M R   GV    +++         
Sbjct: 671 DELVSAQLVSETDDLFLVSRMGQSIRFTATDDALRPMGRATSGVTGMKFREDDELLAADV 730

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +G          Y +        L  RGG+G  V K     G  + +
Sbjct: 731 -VTDGSFVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVGKYQEERGHLVGA 779



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 8/192 (4%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR 584
                    + S  + A++ ++GD L  A     TD + L+S  G++    A +      
Sbjct: 648 KTRLEDYDTNRSAGVIAINLRDGDELVSAQLVSETDDLFLVSRMGQSIRFTATDDALRPM 707

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G   +    +    + +++ A V      + +V+  G A      E     R G   +KV
Sbjct: 708 GRATSGVTGMKFREDDELLAADVVTDGSFVFIVTEGGYAKRTAVEEYRLQGRGGLG-IKV 766

Query: 645 ----SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
                    +   + V   D V VV E  K++  S+  +P   R   GV           
Sbjct: 767 GKYQEERGHLVGALIVQEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVIFAKPDKNDRI 826

Query: 699 DVICFKICEGLT 710
             +      GL 
Sbjct: 827 IEVARNSERGLE 838


>gi|182437499|ref|YP_001825218.1| DNA gyrase subunit A [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466015|dbj|BAG20535.1| putative DNA gyrase subunit A [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 855

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 236/768 (30%), Positives = 396/768 (51%), Gaps = 42/768 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 2   RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +
Sbjct: 62  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECK 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF+D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 122 MMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   +++PE S E+    L+E I GPDFPTG  +V  R+ I E+YR GRG   
Sbjct: 182 LREVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGA-LVVGRKGIEEAYRTGRGSIT 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +G  C+VVTE+P+Q     L +KIA+L+   ++  + D+RDE S+   +
Sbjct: 241 MRAVVAVEEI-QGRQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQ 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +D++T F  NM  L    VP+ + +D  ++ W+ H+ E
Sbjct: 300 RLVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GVPRTLSIDAFIRHWVTHQIE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E Q
Sbjct: 359 VIVRRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLMGLLEIDELQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+  + + +L S  +Q   ++ E+  + + F 
Sbjct: 419 ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILASPAKQRAIVSEELAAIVDKFG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                  RR+              + +I +E I V IS  G+++  K+            
Sbjct: 479 D-----DRRSQLVPFDGDMS---IEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           +     +E D +     + T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 531 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 590

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        Y++   L++ +  G        +  +    G   + +       +++
Sbjct: 591 PDEKIAQILAIRDYEAVPYLILATKGGLVKKTALKDYDSPRSGGVIAINLREMPEGGDDE 650

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           +     V+  D + ++ +  + + F+     +  M R   GV+  S+++G     +   +
Sbjct: 651 LIGAELVSAEDDLLLISKKAQSIRFTATDDALRPMGRATSGVKGMSFREGDELLSMNV-V 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             G     +    Y +        +  RGG+G    K     G  + +
Sbjct: 710 RPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 757


>gi|320538928|ref|ZP_08038604.1| DNA topoisomerase IV, subunit A [Serratia symbiotica str. Tucson]
 gi|320031088|gb|EFW13091.1| DNA topoisomerase IV, subunit A [Serratia symbiotica str. Tucson]
          Length = 757

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 272/757 (35%), Positives = 451/757 (59%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSD---LTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LSNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLAELGQGTVDWVPNFDGTLQEPKILPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  AA+ALID P   ++ LL ++ GPDFPT   I+  R+ I + Y+
Sbjct: 178 VGMATDIPPHNVREVATAAVALIDKPGALLDDLLAFVQGPDFPTEAEIITPRDEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 NGRGSVRMRAVWNKEDNSA-----VITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S +    R+V+ P++  +D + +M  +F  +D+E  + +NMN++ +   PQV  L  IL 
Sbjct: 293 SDQQNPTRLVVVPRSNRIDLEQVMNHLFATTDLERSYRVNMNMIGLDNRPQVKGLVEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +RR+ + RR ++R++ + +R+ IL+GLL+A+LNID++I IIR+ED+PKPV++  F 
Sbjct: 353 EWLTYRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDQVIHIIRSEDEPKPVLMQSFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +++ Q +AIL L+LR L KLEE++I+ E D L+ E++++ +LL S ++    +  EI+  
Sbjct: 413 ISDTQAEAILELKLRHLAKLEEFKIRGEQDALVKERDQLQALLASERKLNILLKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E + A KA  +   +  EP+T+V+S  GW+RS K H ++   
Sbjct: 473 AQAYGD-----DRRSPIIERAEA-KAMNEHDFVPSEPVTIVLSEMGWVRSAKGHDIEPGG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LSYKAGDSFRSAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S  G  FI   ++++A  R GK  + +  + K+   +++ G+   
Sbjct: 587 EQVLMAPDDQKLLMASDAGYGFICTFNDLVARNRAGKVMITLPDDAKVLPPIEIHGEDNM 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWID 713
           +  +    ++L+F +  +P++S+GKG ++ S         +  ++ ++     +    + 
Sbjct: 647 LLSITAAGRILMFPVTDLPQLSKGKGNKIVSIPATQAATGEDKLAWLLVL-PPQTSITLH 705

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              R       DL  +  +RG  G+ +P+G  R  + 
Sbjct: 706 VGKRKLTLRPEDLQKFRAERGRKGTQLPRGLQRIDRV 742


>gi|71083677|ref|YP_266397.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062790|gb|AAZ21793.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062]
          Length = 849

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 252/801 (31%), Positives = 414/801 (51%), Gaps = 63/801 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++    ++N+K +S+   +   YL+YA+S I  RA+PD+RDG KPVHRRI+ AM + G
Sbjct: 1   MKDTEIPKDKNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   F+KSARIVG+VIGK HPHGDQSVYD+LVR+ Q F    PL+ GQGNFG+IDGD 
Sbjct: 61  YDWSKQFRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ +V++ ++  +++D ++++  Y+E + EP V P+++PNLL NG  GIAV
Sbjct: 121 AAAMRYTETRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN+ EI +  LALI+N +I I++L+++I GPDFPTGG ++  +E I   Y +
Sbjct: 181 GMATSIPPHNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGG-VIIGKEIIKAGYNV 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++R    VE    G   +V+T +PYQV KS L E+IA+L+  K+I  ++DIRDES
Sbjct: 240 GRGSFKIRGEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V       ++P+ +   ++  + +E+ F  N   +     P++  L   L  +L
Sbjct: 300 NREGIRVAIDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVD-GKPKICNLKEFLTNFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
             R +V+ +++ F ++  + R  IL GL ++  N+D+II IIR+   P            
Sbjct: 359 TFREDVVIKKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKW 418

Query: 416 ---------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                             + +SL++ QV AIL LRL+ L  L   +I+ E+  L    + 
Sbjct: 419 KINKSLKLISLVEDKKEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADLIKG 478

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              ++NS K+  N I+ E++ +KE F+       RRT   +   A      +  I+KE +
Sbjct: 479 YKKIINSKKELLNVISEELKTIKEKFAVP-----RRTKIID---AILNYDIEETIQKESV 530

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            + ++ +G+I+          K      S +  ++ DS+   L  +T   +L  ST+G  
Sbjct: 531 IITVTLQGYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLV 590

Query: 573 YTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAF 624
           Y + A  +        G+++  ++ L ++Q I +   +          +++  ++KG   
Sbjct: 591 YKIKAWKIPEGSTTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVR 650

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MS 682
                +  +    GK  +K+   +K+  V     D  V +  +N K + F   ++     
Sbjct: 651 KNSLEDFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKG 710

Query: 683 R-GKGVRLQSYKDGGISDVICFKI---------CEGLTWIDSAGRSYNRSENDLLGWLGK 732
           R  KG++            +              +G   +      Y +   +    +  
Sbjct: 711 RSSKGIKGIELSPNDEIVSLSITNKEKIKKDTKSDGRFVLSITENGYGKKTLNNEYRVTN 770

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           RGG G +     PR+G   SS
Sbjct: 771 RGGKGIIGIVNSPRNGSICSS 791



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 16/200 (8%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                     +S    A+     D +           ++L + +GK     +  L   +G
Sbjct: 651 KNSLEDFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKG 710

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYD----------STCKLLVVSSKGNAFIVEESEIIANT 635
                   I+L+ N +IV+  + +              +L ++  G       +E     
Sbjct: 711 RSSKGIKGIELSPNDEIVSLSITNKEKIKKDTKSDGRFVLSITENGYGKKTLNNEYRVTN 770

Query: 636 RKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
           R GK  + +     +         + GD V +     +++  ++ +I    R  +GVR+ 
Sbjct: 771 RGGKGIIGIVNSPRNGSICSSFPVIEGDDVMISTNKGRVIRVAVKEIRTAGRNTQGVRII 830

Query: 691 SYKDGGISDVICFKICEGLT 710
               G    V   KI + L 
Sbjct: 831 KL-SGDEKVVSAIKIDDNLE 849


>gi|260752502|ref|YP_003225395.1| DNA topoisomerase IV subunit A [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551865|gb|ACV74811.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 748

 Score =  622 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 378/740 (51%), Positives = 517/740 (69%), Gaps = 5/740 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+   +   AL ERYLAYALSTI  R++PD+RDG KPV RR++ AM  + LD  +A+KK
Sbjct: 9   ENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKLDPASAYKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+VIGK HPHGDQSVYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 69  CARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAMRYTEA 128

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T  A  +++G++E AVDFR TYN E+ EP  F   FPNLLANG+SGIAVGMATSIP H
Sbjct: 129 RLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVGMATSIPPH 188

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV E+ +A   LID+PE   ++LL ++ GPDFPTGG IV+S ++I  +Y  GRG FRVRA
Sbjct: 189 NVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVDTIRHAYETGRGSFRVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R+ VE++GRG W IV+ EIP+Q+ KSRLIE+IA LI  K++P+L DIRDES E++RIVL 
Sbjct: 249 RYEVEDIGRGGWIIVIHEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESDENIRIVLE 308

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+R++DP LLM+ +F L+ +ETR  LNMNVL     P V+PL  +LKEWLAH+  +L R
Sbjct: 309 PKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWLAHQFAMLQR 368

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R   R+Q ID RVE+L+G L AYLN+D +I IIRNED PK VM++ F L++ Q +AILN+
Sbjct: 369 RCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKSVMIAEFKLSDRQAEAILNM 428

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+L++LEE +I +E D+L  E+  + +L+ S   Q  ++  ++  +++ +S  + LG 
Sbjct: 429 RLRALKRLEEAEITAERDSLKEERAGLQALIESDALQSKKLKSDLSALRKRYSLKSQLGA 488

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL--K 552
           R+T   E + A KA    AMIE+EP+TVV+S RGWIR LK H    S    +  +     
Sbjct: 489 RQTLIEEQTPA-KAIPLDAMIEREPMTVVLSKRGWIRGLKGHVDLKSTEAMRFKEGDEAD 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
              HA+TTDR+L+ + DG+ YTL A  L  GRG GE ++L++D++++  I+     +   
Sbjct: 548 FICHAYTTDRLLIATEDGRFYTLLADRLPGGRGFGEPVRLMLDISNDTKIMALLPLNPEG 607

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKL 670
           KLLVVSS G  FI + + ++A TRKGK  ++V  +E + ++  +    DH+A++GENRKL
Sbjct: 608 KLLVVSSSGRGFITQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEGHDHIALIGENRKL 667

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L F + QIPE+++G GV+LQ Y+ G +SD   F + EGL+W         R+E D+  W+
Sbjct: 668 LAFPLSQIPELAKGSGVQLQRYRGGHLSDATTFTLEEGLSWPMGGESGRIRTETDMKTWV 727

Query: 731 GKRGGVGSLVPKGFPRSGKF 750
             RG  G L P GFP++ +F
Sbjct: 728 VARGASGRLPPVGFPKNNRF 747


>gi|254226423|ref|ZP_04920010.1| DNA gyrase, subunit A [Vibrio cholerae V51]
 gi|125621045|gb|EAZ49392.1| DNA gyrase, subunit A [Vibrio cholerae V51]
          Length = 770

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 255/771 (33%), Positives = 384/771 (49%), Gaps = 75/771 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E   +  +L S ++    I  E+  ++  FS +        T         A
Sbjct: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D ILL ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   L +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 655 KKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVV 714

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
                               +  M R   GVR     DG     +     E
Sbjct: 715 DENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTE 765


>gi|254560021|ref|YP_003067116.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens DM4]
 gi|254267299|emb|CAX23131.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens DM4]
          Length = 748

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 400/736 (54%), Positives = 532/736 (72%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M  + LD  +
Sbjct: 7   PPPSDGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTS 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           AFKK A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYR
Sbjct: 67  AFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+T+VA L+L G+DED VDFR +YN E  EP+V P+ FPNLLANG+ GIAVGMATS
Sbjct: 127 YTEARLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATS 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+C+AAL LI N E + E+L  ++ GPDFPTGGI+++S ESI E+YR GRGGF
Sbjct: 187 IPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGF 246

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RVRARW  E++GRG+W IVVTEIPY V K+RLIEK+A+L+  K++PLL D+RDESAEDVR
Sbjct: 247 RVRARWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVR 306

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL P++RS+DP +LMES+F LS++E+R PLN+NVL  G VP+V+ L   L+EW+ HRR 
Sbjct: 307 VVLEPRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECLREWVDHRRV 366

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RRSS+R+  I+RR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +A
Sbjct: 367 VLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANA 426

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+ RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I  +IR VK+ F   T
Sbjct: 427 ILDTRLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPET 486

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            LG+RRTT              AM+E+EPITV++S +GWIR+LK H  +L+ + FK  D+
Sbjct: 487 KLGKRRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVTELAGVAFKGDDT 546

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           LK+A  + TT +ILLL+++GK +T+ A  L  GRG G+ ++L++DL+   +IV A  Y  
Sbjct: 547 LKVAFLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKP 606

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
             KLLV  S G  FI     ++ANTRKGK  L +    +  L+V   GDHVAV   ++ +
Sbjct: 607 ESKLLVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLM 666

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L+F   ++ E+ RGKGVRLQ  +   ++D   F + EGL W D +G++   +   L  W+
Sbjct: 667 LVFPASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWM 726

Query: 731 GKRGGVGSLVPKGFPR 746
           G R   G+L+ + FP+
Sbjct: 727 GHRSDAGTLMTRSFPK 742


>gi|88705253|ref|ZP_01102964.1| DNA topoisomerase IV, A subunit [Congregibacter litoralis KT71]
 gi|88700343|gb|EAQ97451.1| DNA topoisomerase IV, A subunit [Congregibacter litoralis KT71]
          Length = 749

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 290/761 (38%), Positives = 452/761 (59%), Gaps = 25/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ +NT+ ++ ++ +SL+   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MTETNTIDDDGIEGISLKQYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   
Sbjct: 61  LKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T  A+++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTESRLTAYADVLLGELGQGTVDWVPNFDGTMEEPSLLPAQVPNVLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  AA+ L+D P+ ++ +L E I GPD+PT   I+ SRE I + Y 
Sbjct: 181 VGMATDIPPHNLREVVTAAVTLLDAPKTTLAELCEIIQGPDYPTEAEIITSREDIAQIYA 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRGG R+RA W           IVVT +P+Q   SR++E+IA+ + AK++P++ D+RDE
Sbjct: 241 TGRGGLRMRAVW-----DTEHGDIVVTALPHQASGSRVLEQIAQQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  + +N+N++ +   P V  LDGILK
Sbjct: 296 SDHENPTRLVIVPRSNRIDRDALMSHLFATTDLERTYRVNLNMIGIDGRPGVRSLDGILK 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           +WL  RRE + RR  +R++ + RR+ IL+G L AYLNIDE+I IIR E+ PK  +++RF 
Sbjct: 356 QWLKFRRETVRRRLDYRLERVQRRLHILEGYLAAYLNIDEVIHIIRTEEHPKQALIARFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR+L KLEE +I+ E D L  E++ ++  L S  +    I  E+  +
Sbjct: 416 LSDIQAEAILELKLRNLAKLEEMKIRGEQDELEKERDWLEKTLGSEARLKTLIKKELTAI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+       A   +  + M    PITVV+S +GWIR+ K H +D ++
Sbjct: 476 AEKYGD-----DRRSPLASREEAQAFSELELMTAD-PITVVLSEKGWIRAAKGHDMDPAS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS K+A    +    +++ + G+AYTL   NL S RG GE +   I+       
Sbjct: 530 LSYKSGDSFKLAARGRSNQPAVIIDSTGRAYTLATHNLPSARGQGEPLTGRINPPSGAGF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660
               + DS  + L+ S  G  FI    E+    R GK  L + +  ++     +  D   
Sbjct: 590 DGLMMGDSGQRCLLSSDAGYGFITTLGELQTKNRAGKAALTLPAGARVVSPAPIGEDAQW 649

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWID 713
           VA V    +LL+F +  +P +SRGKG ++ +        ++  +      +  +GLT   
Sbjct: 650 VAAVSNEGRLLLFPLADLPSLSRGKGNKIIAIPGPRARDREEFMIATAVLRENDGLTV-W 708

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF-LSS 753
           +  R      ++L  + G+RG  G+ +P+GF R  +  ++S
Sbjct: 709 AGKRHLTLKRSELEHYHGERGRRGNKLPRGFQRVERMEVAS 749


>gi|327482436|gb|AEA85746.1| DNA topoisomerase IV subunit A [Pseudomonas stutzeri DSM 4166]
          Length = 750

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 279/760 (36%), Positives = 443/760 (58%), Gaps = 26/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LNADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP   P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPATLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  S+E+L E++ GPDFPT   IV  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPSASVEQLCEHVQGPDFPTEAEIVTPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM+ +F  +D+E+ + +N NV+ +   PQV  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVEALMQHLFATTDLESSYRVNTNVIGLDGRPQVKNLRTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  FR+  ++RR+ +L+GLL+A+LN+DE+I IIR ED+PKPV+++RF 
Sbjct: 356 EWLTYRIGTVRRRLQFRLDKVERRLHLLEGLLVAFLNLDEVIHIIRTEDQPKPVLMARFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E D L  E+E++ +LL S  +    +  E+ E 
Sbjct: 416 LSELQADYILDTRLRQLARLEEMKIRGEQDELAKERERLLALLGSEAKLKKLVRKELLED 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E + A   T  +  +  EP+TVVIS +GW R  K H +D   
Sbjct: 476 AETYGD-----DRRSPIVERAEARALTENEL-LPSEPVTVVISEKGWARCAKGHDIDAGG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+ K A    +    + + + G++Y+L A  L S RG GE +   +        
Sbjct: 530 LSYKAGDNFKAAAAGRSNQYAVFIDSTGRSYSLAAHTLPSARGQGEPLTGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +  ++     +     D
Sbjct: 590 ECVLLPDDEALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGARVVAPRPLASREDD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  + D+           +
Sbjct: 650 WLAAVTTEGRLLVFPVRDLPQLGKGKGNKIIGIPGERVASREEYLVDLAVL-PAGATLVL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFL 751
            +  R+ +    DL  + G+RG  G+ +P+GF R  G  +
Sbjct: 709 QAGKRTLSLKAEDLEHYKGERGRRGNKLPRGFQRVEGLLV 748


>gi|326388525|ref|ZP_08210119.1| DNA topoisomerase IV subunit A [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206990|gb|EGD57813.1| DNA topoisomerase IV subunit A [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 770

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 377/770 (48%), Positives = 516/770 (67%), Gaps = 21/770 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D  +       + +       AL ERYL YALSTI  R++PDLRDG KPVHRR++ A
Sbjct: 1   MASDTPTRDEPDPFDAIVDAPFDAALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ LD   AFKKSAR+VG+VIGK HPHGD SVYD++VRLAQ F  RYPL+ GQGNFGN
Sbjct: 61  MRQLRLDPTGAFKKSARVVGDVIGKYHPHGDASVYDAMVRLAQDFALRYPLVEGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAAYRYTEAR+T  A  ++ G+DE  VDF  TYN E+ EP +FP  FPNLLANG+
Sbjct: 121 IDGDNAAAYRYTEARLTATAARLMAGLDEGTVDFHPTYNGEEHEPEIFPGLFPNLLANGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMATSIPSHNV EI +A L LIDNP +   +L+    GPDFPTGG++V+S  +I 
Sbjct: 181 TGIAVGMATSIPSHNVAEIVDATLMLIDNPYVEHAQLMTVFHGPDFPTGGVVVDSPAAIS 240

Query: 241 ESYRLGRGGFRVRARWC-------------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            +Y +G+G  RVR R+              +E++G G W +V++EIPY V K +LIE+IA
Sbjct: 241 SAYEVGKGAIRVRGRFSTGRDEAGEWEDSGIEKLGSGQWQLVISEIPYMVAKGKLIEQIA 300

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
            LI  K++P+LED+RDES E +RIVL PK+R++DPDLL ES++ L+++E+RF LN+N+L 
Sbjct: 301 ALIADKKLPILEDVRDESDEHIRIVLVPKSRNVDPDLLKESLYRLTELESRFSLNLNMLD 360

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
             R P V+ L  IL+EW+  + ++L RRS  R+  I  R+E+L G +IAYLN+D II II
Sbjct: 361 ARRTPGVLGLKQILQEWVIAQIDILVRRSQHRLDKIAARLELLDGYIIAYLNLDRIIEII 420

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R ED+PKPVM++ F LT+ Q +AILN+RLRSLRKLEE +++ E D LLAE++++  LL +
Sbjct: 421 RTEDEPKPVMMAEFGLTDRQAEAILNMRLRSLRKLEEMELRRERDALLAEQDELTKLLEN 480

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +Q  ++  ++  +++ +   T LGRRRTT  E +   +     AMIEKEP+TV++S R
Sbjct: 481 PARQRTRLKRDLAALRKEYGPDTALGRRRTTIAEAAPT-REFSMDAMIEKEPVTVILSQR 539

Query: 528 GWIRSLKSHSVDLS-----ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           GWIR+ K H    +        FKEGD    A HA TTD++L+   +G+ YTL A  L  
Sbjct: 540 GWIRAAKGHVPLGTDGKGEDFKFKEGDGPAFAFHAQTTDKLLIAIDNGRFYTLGADKLPG 599

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            RG GE I+ ++D++ N  +V  F +    +LL+ ++ G  F+ E  E++A TRKG+  +
Sbjct: 600 ARGFGEPIRTVLDIDPNGQVVAIFPWRHGGQLLLAANNGRGFVAEMDELLAETRKGRGVV 659

Query: 643 KVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700
                  + +V ++    DHVAVVGENRKL+IF++ ++P + +G+GV LQ YKDGG+SD 
Sbjct: 660 STKPGVHLAVVREIAPEHDHVAVVGENRKLVIFALSEMPVLGKGQGVTLQRYKDGGLSDA 719

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  K+ +GL+W         R+E DLL W   RG  G L P GFPR  KF
Sbjct: 720 VTLKLEDGLSWAMGGETGRTRTEKDLLPWKVARGAAGRLPPTGFPRDNKF 769


>gi|146284119|ref|YP_001174272.1| DNA topoisomerase IV subunit A [Pseudomonas stutzeri A1501]
 gi|145572324|gb|ABP81430.1| DNA topoisomerase IV, A subunit [Pseudomonas stutzeri A1501]
          Length = 750

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 278/760 (36%), Positives = 443/760 (58%), Gaps = 26/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LNADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP   P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPATLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  S+E+L E++ GPDFPT   IV  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPSASVEQLCEHVQGPDFPTEAEIVTPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM+ +F  +D+E+ + +N NV+ +   PQV  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVEALMQHLFATTDLESSYRVNTNVIGLDGRPQVKNLRTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  FR+  +++R+ +L+GLL+A+LN+DE+I IIR ED+PKPV+++RF 
Sbjct: 356 EWLTYRIGTVRRRLQFRLDKVEKRLHLLEGLLVAFLNLDEVIHIIRTEDQPKPVLMARFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E D L  E+E++ +LL S  +    +  E+ E 
Sbjct: 416 LSELQADYILDTRLRQLARLEEMKIRGEQDELAKERERLLALLGSEAKLKKLVRKELLED 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E + A   T  +  +  EP+TVVIS +GW R  K H +D   
Sbjct: 476 AETYGD-----DRRSPIVERAEARALTENEL-LPSEPVTVVISEKGWARCAKGHDIDAGG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+ K A    +    + + + G++Y+L A  L S RG GE +   +        
Sbjct: 530 LSYKAGDNFKAAAAGRSNQYAVFIDSTGRSYSLAAHTLPSARGQGEPLTGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +  ++     +     D
Sbjct: 590 ECVLLPDDEALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGARVVAPRPLASREDD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  + D+           +
Sbjct: 650 WLAAVTTEGRLLVFPVRDLPQLGKGKGNKIIGIPGERVASREEYLVDLAVL-PAGATLVL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFL 751
            +  R+ +    DL  + G+RG  G+ +P+GF R  G  +
Sbjct: 709 QAGKRTLSLKAEDLEHYKGERGRRGNKLPRGFQRVEGLLV 748


>gi|313668529|ref|YP_004048813.1| DNA gyrase subunit A [Neisseria lactamica ST-640]
 gi|192382558|gb|ACF04300.1| GyrA [Neisseria lactamica]
 gi|313005991|emb|CBN87450.1| DNA gyrase subunit A [Neisseria lactamica 020-06]
          Length = 912

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 242/848 (28%), Positives = 397/848 (46%), Gaps = 110/848 (12%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D PE  I++L++ I  PDFPTG  I      + E
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIY-GLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +RA+   E +G+      IV+ EIPYQV K++L+EKI EL+  K +  + 
Sbjct: 240 GYKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L+  +I     NL+ +      +L+  ++    I  E+ E+K  +              
Sbjct: 479 GLDREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDER--------LS 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V  S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSN 710

Query: 667 NRKLLIFSI--------------------------DQIPEMSRGK-GVRLQSY------- 692
             K + F+                           D    +  GK GVR           
Sbjct: 711 LGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMRG 770

Query: 693 ----KDGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                DG I  +I F       GL  + +    Y +           +GG G++      
Sbjct: 771 MRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 830

Query: 746 RSGKFLSS 753
           R+G  +++
Sbjct: 831 RNGDLVAA 838



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 11/134 (8%)

Query: 596 LNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
           L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E+ 
Sbjct: 773 LPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN 832

Query: 650 --MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFK 704
             +     V   D + ++     L+   ++QI E  R   GV+L +  +G  +  +    
Sbjct: 833 GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVA 892

Query: 705 ICEGLTWIDSAGRS 718
             E  T +      
Sbjct: 893 EEETETDMPETEAG 906



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 792 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 851

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 852 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 881


>gi|91763282|ref|ZP_01265246.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002]
 gi|91717695|gb|EAS84346.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002]
          Length = 849

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 252/801 (31%), Positives = 414/801 (51%), Gaps = 63/801 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++    ++N+K +S+   +   YL+YA+S I  RA+PD+RDG KPVHRRI+ AM + G
Sbjct: 1   MKDTEIPKDKNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   F+KSARIVG+VIGK HPHGDQSVYD+LVR+ Q F    PL+ GQGNFG+IDGD 
Sbjct: 61  YDWSKQFRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ +V++ ++  +++D ++++  Y+E + EP V P+++PNLL NG  GIAV
Sbjct: 121 AAAMRYTETRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN+ EI +  LALI+N +I I++L+++I GPDFPTGG ++  +E I   Y +
Sbjct: 181 GMATSIPPHNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGG-VIIGKEIIKAGYNV 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++R    VE    G   +V+T +PYQV KS L E+IA+L+  K+I  ++DIRDES
Sbjct: 240 GRGSFKIRGEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V       ++P+ +   ++  + +E+ F  N   +     P++  L   L  +L
Sbjct: 300 NREGIRVAIDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVD-GKPKICDLKEFLTNFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
             R +V+ +++ F ++  + R  IL GL ++  N+D+II IIR+   P            
Sbjct: 359 TFREDVVIKKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKW 418

Query: 416 ---------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                             + +SL++ QV AIL LRL+ L  L   +I+ E+  L    + 
Sbjct: 419 KINKSLKLISLVEDKKEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADLIKG 478

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              ++NS K+  N I+ E++ +KE F+       RRT   +   A      +  I+KE +
Sbjct: 479 YKKIINSKKELLNVISEELKTIKEKFAVP-----RRTKIID---AILNYDIEETIQKESV 530

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            + ++ +G+I+          K      S +  ++ DS+   L  +T   +L  ST+G  
Sbjct: 531 IITVTLQGYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLV 590

Query: 573 YTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAF 624
           Y + A  +        G+++  ++ L ++Q I +   +          +++  ++KG   
Sbjct: 591 YKIKAWKIPEGSTTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVR 650

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MS 682
                +  +    GK  +K+   +K+  V     D  V +  +N K + F   ++     
Sbjct: 651 KNSLEDFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKG 710

Query: 683 R-GKGVRLQSYKDGGISDVICFKI---------CEGLTWIDSAGRSYNRSENDLLGWLGK 732
           R  KG++            +              +G   +      Y +   +    +  
Sbjct: 711 RSSKGIKGIELSPNDEIVSLSITNKEKIKKDTKSDGRFVLSITENGYGKKTLNNEYRVTN 770

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           RGG G +     PR+G   SS
Sbjct: 771 RGGKGIIGIVNSPRNGSICSS 791



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 16/200 (8%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                     +S    A+     D +           ++L + +GK     +  L   +G
Sbjct: 651 KNSLEDFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKG 710

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYD----------STCKLLVVSSKGNAFIVEESEIIANT 635
                   I+L+ N +IV+  + +              +L ++  G       +E     
Sbjct: 711 RSSKGIKGIELSPNDEIVSLSITNKEKIKKDTKSDGRFVLSITENGYGKKTLNNEYRVTN 770

Query: 636 RKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
           R GK  + +     +         + GD V +     +++  ++ +I    R  +GVR+ 
Sbjct: 771 RGGKGIIGIVNSPRNGSICSSFPVIEGDDVMISTNKGRVIRVAVKEIRTAGRNTQGVRII 830

Query: 691 SYKDGGISDVICFKICEGLT 710
               G    V   KI + L 
Sbjct: 831 KL-SGDEKVVSAIKIDDNLE 849


>gi|192382560|gb|ACF04301.1| GyrA [Neisseria lactamica]
          Length = 912

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 242/848 (28%), Positives = 397/848 (46%), Gaps = 110/848 (12%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D PE  I++L++ I  PDFPTG  I      + E
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIY-GLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +RA+   E +G+      IV+ EIPYQV K++L+EKI EL+  K +  + 
Sbjct: 240 GYKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARSWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L+  +I     NL+ +      +L+  ++    I  E+ E+K  +              
Sbjct: 479 GLDREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDER--------LS 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V  S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSN 710

Query: 667 NRKLLIFSI--------------------------DQIPEMSRGK-GVRLQSY------- 692
             K + F+                           D    +  GK GVR           
Sbjct: 711 LGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMRG 770

Query: 693 ----KDGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                DG I  +I F       GL  + +    Y +           +GG G++      
Sbjct: 771 MRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 830

Query: 746 RSGKFLSS 753
           R+G  +++
Sbjct: 831 RNGDLVAA 838



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 11/134 (8%)

Query: 596 LNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
           L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E+ 
Sbjct: 773 LPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN 832

Query: 650 --MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFK 704
             +     V   D + ++     L+   ++QI E  R   GV+L +  +G  +  +    
Sbjct: 833 GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVA 892

Query: 705 ICEGLTWIDSAGRS 718
             E  T +      
Sbjct: 893 EEETETDMPETEAG 906



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 792 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 851

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 852 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 881


>gi|171741729|ref|ZP_02917536.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC
           27678]
 gi|283454965|ref|YP_003359529.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|306823991|ref|ZP_07457365.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|309801965|ref|ZP_07696079.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022]
 gi|171277343|gb|EDT45004.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC
           27678]
 gi|283101599|gb|ADB08705.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|304552989|gb|EFM40902.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|308221413|gb|EFO77711.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022]
          Length = 889

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 224/771 (29%), Positives = 377/771 (48%), Gaps = 27/771 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++   +  E ++   LR  + + YL+YA+S I +RA+PD+RDG KPVHRR+I+AM + G 
Sbjct: 30  TDYGLMTGERIQKKDLRQEMRDSYLSYAMSVIVDRALPDVRDGLKPVHRRVIYAMYDGGY 89

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D A
Sbjct: 90  RPDRGYSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPA 149

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVG
Sbjct: 150 AAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVG 209

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ E     +D+PE S E+    L+  I GPDFPTG  I+   + I ++
Sbjct: 210 MATNIPPHNMREVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATIL-GHKGIEQA 268

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+V+TE+PYQV   RL+  I E +   +I  + D+R
Sbjct: 269 YRTGRGLITMRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMR 327

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  +
Sbjct: 328 DETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFI 386

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + W++H+ +V+ RR+++  +  + R  IL+G L A   IDE+IA+IR  +  +       
Sbjct: 387 RHWVSHQLDVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM 446

Query: 422 ---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + E Q DAIL ++LR L  LE  +I  E + L+ +    + +L   ++Q   +  E
Sbjct: 447 DLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPERQRKIVGDE 506

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+   +           +         A     +       +  +     R+      
Sbjct: 507 LDEIVAKYGDERRTRILPYSGEMNVEDLIAEENVVVTVTHSGFIKRTKADEYRAQHRGGK 566

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y L A  L  G    +   +  L+  
Sbjct: 567 GIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVANLLQF 626

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I T      Y+    L++ +  G       +E  +  + G   +++ ++      
Sbjct: 627 GPDEAIQTVLSIPNYEVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLMTDENGENA 686

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICF 703
           +++         D + +V +    L F  D   +  M R   GV+   +++G     +  
Sbjct: 687 DELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAGVQGMKFREGDELLAMDV 746

Query: 704 KICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +     +      + +        L  R G G    +     G  + +
Sbjct: 747 VWGDSDKDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGRGSLVGA 797


>gi|223936716|ref|ZP_03628626.1| DNA gyrase, A subunit [bacterium Ellin514]
 gi|223894567|gb|EEF61018.1| DNA gyrase, A subunit [bacterium Ellin514]
          Length = 893

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 211/804 (26%), Positives = 371/804 (46%), Gaps = 68/804 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E V  +++   ++  +L Y++S I  RA+PD+RDG KP  RRI+ AM ++ L      +
Sbjct: 21  NEKVAKINVADEIKNSFLDYSMSVIISRALPDVRDGLKPSQRRILFAMHDLSLYPNRQHR 80

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LV +AQP+  R  LI GQGNFG+I+GD  AA RYTE
Sbjct: 81  KCAKICGDTSGNYHPHGEAVIYPTLVHMAQPWAMRERLIDGQGNFGSIEGDPPAAMRYTE 140

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT +   ++  +++D VDF   Y+E   EP VFP+ FPNLL NG +GIAVGMAT++  
Sbjct: 141 ARMTHLGAALMADMEKDTVDFVPNYDETSKEPTVFPAAFPNLLVNGGTGIAVGMATNMAP 200

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +   A ID+P I++ +L++YI GPDFPTG ++    E I + +  GRG  ++R
Sbjct: 201 HNLGEVIDGICAQIDDPTITVPQLMKYIKGPDFPTGCMV-CGLEGIKKYFATGRGQIKMR 259

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  VE++  G   IV++ +P+ V  ++L E+IAEL+  K I  +  +R+ES E+ RIV 
Sbjct: 260 GKVDVEQLKNGREQIVISTVPFNVNPAQLEERIAELVNEKIIGDISALRNESDENTRIV- 318

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P +++ +++  + +E+ F +N   +     P+ + L  ++  ++ HRREV+ 
Sbjct: 319 IELKRDASPKVVINNLYNHTSLESSFAVNALAIDH-GRPKTLGLKDLINAYIEHRREVIM 377

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------- 417
           RR+ F ++  + R E L+G LIA  N+DE I IIR+    +                   
Sbjct: 378 RRTRFELRKAEERAETLEGYLIALSNMDEFIRIIRSSANREEARIKLLAFDFNRQQVEQI 437

Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                        R++ +E Q +AIL+LRL  L  LE  ++++E   L+   + +  +L 
Sbjct: 438 GILIRDEARLTNGRYAFSEAQANAILDLRLYQLTGLEIDKVRAEYTALIERIKDLLDILA 497

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              +    I  E+RE+KE ++                          +       +  +N
Sbjct: 498 KESRVLEIIKAELREIKEKYATPRMTDLVPDEGEMALEDLITNEGVIITITHGGLIKRTN 557

Query: 527 RGWIRSLKSHSVDLSALHFKE--------GDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
               R+ +     +  +  +E         D ++    A T D ++  +  G+ +     
Sbjct: 558 VSSYRAQRRGGKGVIGMATREGSAADGDKDDFIEHLFSAGTHDYLMFFTNSGRVFVERVH 617

Query: 579 NLLSGRGHGE--AIQLLIDLNHNQDIVTAF-------VYDSTC------KLLVVSSKGNA 623
            +       +  +I  L++L   + I                       +L   + +G  
Sbjct: 618 EIPDMARASKGRSIANLLELKAEEKIAALIRIVSKNGPNKEDQTWTQSGELFFATQQGTV 677

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-------------TGDHVAVVGENRKL 670
                ++     + G   + +   + +  V                 G+ V ++      
Sbjct: 678 KKTSLADFANVRKGGIIAISIEPGDTLIDVKLTRGSKVEADGTVSDPGEDVVLITREGMS 737

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           + F+   +  M R   GVR  + +       +   + +  T + +      +  +     
Sbjct: 738 IRFAESNVRSMGRNATGVRGINLEKTDAVVALAVLVPD-ATLLVAGENGIGKRTDFGEYR 796

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
           +  RGG G +  K   ++G  + +
Sbjct: 797 VQSRGGKGIITMKTNDKTGGVVGA 820



 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I+L     +V   V      LLV    G     +  E    +R GK  + + + +K   V
Sbjct: 758 INLEKTDAVVALAVLVPDATLLVAGENGIGKRTDFGEYRVQSRGGKGIITMKTNDKTGGV 817

Query: 654 V----KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           V        D + ++ E  +++  S+  I E  R  +GV+L + + G     I   I E 
Sbjct: 818 VGALTVRDNDEIMLITEAGQMVRISVKDIREAGRNTQGVKLINLEAGDKLQAISPVISEE 877


>gi|27352960|dbj|BAC49961.1| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110]
          Length = 884

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 255/828 (30%), Positives = 394/828 (47%), Gaps = 110/828 (13%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL YA+S I  RA+PD RDG KPVHRRI+++M+E G      + KSAR+VG+VIGK
Sbjct: 1   MKKSYLDYAMSVIVARALPDARDGLKPVHRRILYSMNEQGHTPDKKYVKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQS+YD++VR+AQ F  R PLI GQGNFG++DGD  AAYRYTEAR+T+ A  +L 
Sbjct: 61  YHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEARLTKAALALLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF+  Y+  ++EP V P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +A +A
Sbjct: 121 DIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACVA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP ++I++L+  + GPDFPTGG+I+  R  I  +Y LGRG   +R +  +E + +  
Sbjct: 181 LIDNPALTIDELINIVPGPDFPTGGVIL-GRAGIRAAYHLGRGSIVMRGKVAIETIRKER 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             +++TEIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+    R    D++
Sbjct: 240 EALIITEIPYQVNKATMVERIAELVKEKKIEGIGDLRDESDRDGYRVVIELKRDAVADVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F +NM  L     P++M L  +L  ++  R  V+ RR+ F +     
Sbjct: 300 LNQLYRFTPLQTSFGVNMVALDS-GRPRIMHLKDLLAIFVDFRERVVTRRTKFLLAKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF------------------------ 421
           R  IL GL IA  NIDE+I +IR    P     +                          
Sbjct: 359 RAHILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMSRDWPARDVEDMLTLIDDPRHRIS 418

Query: 422 -----SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 L+  Q  AIL+LRL+ L  L   +I+ ELD L  E      +L S ++    I 
Sbjct: 419 PDGTIRLSMEQARAILDLRLQRLTALGRDEIRDELDKLAGEIADYLDILRSRERVLGIIK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ EVK  F+       RRT   E          + +I++E + V +S+ G+++     
Sbjct: 479 TELAEVKAEFATP-----RRTVIMEQEGE---VEDEDLIQREDMVVTVSHAGYVKRVPLS 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGH 586
                +      + +  ++ D +     A T   +L  S+ G+ Y      L        
Sbjct: 531 AYRAQRRGGKGRAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNAR 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKT 640
           G+A+  ++ L   + I T               ++  ++ GN    + S+ +   R G  
Sbjct: 591 GKALINILPLEQGERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRSGII 650

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSYKDGGI 697
            +K+   E +  V   T  D V + G   + + F +  +     R   GVR  +  +G  
Sbjct: 651 AMKLDENEAIVDVQICTERDDVLLTGAGGQCIRFPVTDVRVFTGRTSMGVRGIALGEGDK 710

Query: 698 SDVICFK----------------------------------------------------I 705
              +                                                        
Sbjct: 711 VISLAILRHVETTSDERSAYLKMRRAVAGEATAEEPAADAEAEETSGSFQLAQERYVEMS 770

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +  +   Y +  +        RGG G +      R+G  ++S
Sbjct: 771 AAEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVAS 818



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 16/109 (14%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVG 665
           +   +L VS  G        E     R GK  + +S   +   +     V   D + +V 
Sbjct: 772 AEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVASFPVEDADQIMLVT 831

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +  +L+   ++ I    R                VI F   E    +  
Sbjct: 832 DKGQLIRCPVEGIRIAGRST------------QGVIVFDTAEDEHVVSV 868


>gi|24212706|ref|NP_710187.1| DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45655920|ref|YP_000006.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24193337|gb|AAN47205.1|AE011192_6 DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|24753768|gb|AAN64016.1|AF434658_13 DNA gyrase subunit A [Leptospira interrogans]
 gi|45599153|gb|AAS68643.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 834

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 253/751 (33%), Positives = 390/751 (51%), Gaps = 16/751 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   ++E YL YA+S I  RA+PD+RDG KPVHRRI+HAM+E        + K 
Sbjct: 31  RVIPVEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKC 90

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEVIG  HPHGD SVY++LVR+ Q F  R PLI GQGNFG+IDGD+ AAYRYTEAR
Sbjct: 91  AKIVGEVIGNYHPHGDASVYEALVRMVQEFSLRVPLIDGQGNFGSIDGDNPAAYRYTEAR 150

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +VAE +L+ ++++ V F   Y++   +P V P+ FPNLL NG+SGIAVGMAT+IP HN
Sbjct: 151 LEKVAEELLRDIEKETVSFSPNYDDTKEQPDVLPANFPNLLVNGSSGIAVGMATNIPPHN 210

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E  +A +A+I NPEI+I ++L+ I GPDFPT GII+   E ++ +Y  G+G  R+R++
Sbjct: 211 LRETIDAVIAVIRNPEITIPEILKIIPGPDFPTSGIIIG-GEGLISAYSTGKGSIRIRSK 269

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   IVVTEIPYQV K  L+EKI +L+  K+I  + +I D S      V   
Sbjct: 270 VEIEEKKNGREVIVVTEIPYQVNKKVLLEKIGDLVNEKQIEGISEILDLSDRKGIRVEIH 329

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +  +++  ++ ++ ++  + + M  +   + P++  +  IL  + AHRREV+ RR
Sbjct: 330 IKKDANAQVILNQLYKMTQLQVSYGITMLAILDNK-PKIFNIKEILTAYAAHRREVIVRR 388

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAIL 432
           + F +   ++R  IL+GL IA  NI+++I +IR    P      ++ RFSL+E Q DAIL
Sbjct: 389 TQFDLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMIRFSLSEVQSDAIL 448

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE  +I  EL+ +      +  +L    +    +  E++EV + +      
Sbjct: 449 EMRLQRLTSLEVQKIIDELEEVRKLIIDLKDILAKPSRVNEIVCTELQEVGDKYGNKRKT 508

Query: 493 GRRRTTFCEVSRADKATLQQAMIE---KEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                T    S   +  +    I         +        +  K     +  L  K  D
Sbjct: 509 EISIETIESSSFNAEDLIADEEIVIQITYDQFIKRLPIDTFKRQKRGGKGIQGLSQKRDD 568

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV 607
            +KI   A T D I+  S  GK Y + A  L   S    G++++ +I+L  ++ I + F 
Sbjct: 569 VIKIMKAAMTHDNIMFFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYISSVFT 628

Query: 608 Y---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAV 663
           +   D    LL+V+ KG    ++  E     + G   + +   +++  V      D V +
Sbjct: 629 FRGEDMDKDLLLVTRKGFIKRIQLKEFGNVKKSGIIAIGLREGDELIKVESMTDKDEVMI 688

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
             +    L    + I    R   GV      +   + V   K  EG      +   Y + 
Sbjct: 689 FSKKGLALRIEGNIIRAQGRTASGVTGMRLAEDD-AIVGLSKYKEGEDIFVVSEEGYGKR 747

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     RGG G    K   ++G  + +
Sbjct: 748 LGFEEFAAKGRGGKGMAYLKITEKNGFSVGT 778



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 6/165 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            + A+  +EGD L         D +++ S  G A  +   N++  +G   +    + L  
Sbjct: 662 GIIAIGLREGDELIKVESMTDKDEVMIFSKKGLALRIEG-NIIRAQGRTASGVTGMRLAE 720

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVV 654
           +  IV    Y     + VVS +G    +   E  A  R GK      +   +   +    
Sbjct: 721 DDAIVGLSKYKEGEDIFVVSEEGYGKRLGFEEFAAKGRGGKGMAYLKITEKNGFSVGTGS 780

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
             + D + ++ +    +  +   I ++ R   GVR+   KD    
Sbjct: 781 VGSEDEIILITQQGMTIRINAFDISKLGRTAVGVRIVDLKDNDKV 825


>gi|241761963|ref|ZP_04760048.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373643|gb|EER63215.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 748

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 378/740 (51%), Positives = 517/740 (69%), Gaps = 5/740 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+   +   AL ERYLAYALSTI  R++PD+RDG KPV RR++ AM  + LD  +A+KK
Sbjct: 9   ENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKLDPASAYKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+VIGK HPHGDQSVYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 69  CARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAMRYTEA 128

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T  A  +++G++E AVDFR TYN E+ EP  F   FPNLLANG+SGIAVGMATSIP H
Sbjct: 129 RLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVGMATSIPPH 188

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV E+ +A   LID+PE   ++LL ++ GPDFPTGG IV+S ++I  +Y  GRG FRVRA
Sbjct: 189 NVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVDTIRHAYETGRGSFRVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R+ VE++GRG W IV+ EIP+Q+ KSRLIE+IA LI  K++P+L DIRDES E++RIVL 
Sbjct: 249 RYEVEDIGRGGWIIVIHEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESDENIRIVLE 308

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+R++DP LLM+ +F L+ +ETR  LNMNVL     P V+PL  +LKEWLAH+  +L R
Sbjct: 309 PKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWLAHQFAMLQR 368

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R   R+Q ID RVE+L+G L AYLN+D +I IIRNED PK VM++ F L++ Q +AILN+
Sbjct: 369 RCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKSVMIAEFKLSDRQAEAILNM 428

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+L++LEE +I +E D+L  E+  + +L+ S   Q  ++  ++  +++ +S  + LG 
Sbjct: 429 RLRALKRLEEAEITAERDSLKEERAGLQALIESDALQSKKLKSDLSALRKRYSLKSKLGA 488

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL--K 552
           R+T   E + A KA    AMIE+EP+TVV+S RGWIR LK H    S    +  +     
Sbjct: 489 RQTLIEEQTPA-KAIPLDAMIEREPMTVVLSKRGWIRGLKGHVDLKSTEAMRFKEGDEAD 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
              HA+TTDR+L+ + DG+ YTL A  L  GRG GE ++L++D++++  I+     +   
Sbjct: 548 FICHAYTTDRLLIATEDGRFYTLLADRLPGGRGFGEPVRLMLDISNDTKIMALLPLNPEG 607

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKL 670
           KLLVVSS G  FI + + ++A TRKGK  ++V  +E + ++  +    DH+A++GENRKL
Sbjct: 608 KLLVVSSSGRGFITQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEDHDHIALIGENRKL 667

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L F + QIPE+++G GV+LQ Y+ G +SD   F + EGL+W         R+E D+  W+
Sbjct: 668 LAFPLSQIPELAKGSGVQLQRYRGGHLSDATTFTLEEGLSWPMGGESGRIRTETDMKTWV 727

Query: 731 GKRGGVGSLVPKGFPRSGKF 750
             RG  G L P GFP++ +F
Sbjct: 728 VARGASGRLPPVGFPKNNRF 747


>gi|320334991|ref|YP_004171702.1| DNA gyrase subunit A [Deinococcus maricopensis DSM 21211]
 gi|319756280|gb|ADV68037.1| DNA gyrase, A subunit [Deinococcus maricopensis DSM 21211]
          Length = 818

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 225/765 (29%), Positives = 397/765 (51%), Gaps = 43/765 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V +   ++  ++ YA++ I +RA+PD+RDG KPVHRRI++AM + GL       KSA +
Sbjct: 6   PVDITNEVKTNFINYAMNVIVDRALPDVRDGLKPVHRRIMYAMLQEGLFSNQKHAKSAAV 65

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+ K HPHGD  +YD++VRL Q +  RYP++  QGNFG+IDGD AAA RYTEARMT+
Sbjct: 66  VGEVMKKYHPHGDSPIYDAMVRLGQWWNMRYPMVDPQGNFGSIDGDMAAAMRYTEARMTK 125

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE +L  ++++ VD +  Y+E  +EP V PS  PNLL NG++GIAVGMAT+IP HN+ E
Sbjct: 126 LAEELLADLEKETVDLKPNYDETTTEPSVLPSAVPNLLVNGSAGIAVGMATNIPPHNLTE 185

Query: 199 ICEAALALIDNP---------EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           I    +++ID P         ++S+++L+ ++ GPDFPTGG I  SR  I ++Y  G  G
Sbjct: 186 IVNGLISIIDKPGRTAEEKAAQVSLDELMVHVQGPDFPTGGRI--SRSGIRDAYATGHAG 243

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VR +  ++E   G   I+++EIPYQV K+ LI+ I+ +  A +IP +  +RDES    
Sbjct: 244 LKVRGKARIDE-KNGRTQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKE 302

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P L++  ++  + ++T F +    +     P+V+PL   ++ +L HR
Sbjct: 303 PVRIVVELKRGAIPTLVLNQLYKYTQLQTTFTVINLSIV-NGEPKVLPLLDTMRYFLEHR 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTE 425
            +V+ RR+++ ++    R  IL+GLL A  +IDE+IA+IR            ++RF LT+
Sbjct: 362 ADVVTRRTAYELRKAQERAHILEGLLKALDHIDEVIALIRRSQTGAEARDGLMTRFQLTD 421

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +++ E + L+   +++ ++L   K  W +I  E++++++ 
Sbjct: 422 VQAQAILDMRLQRLVGLEREKLQGEYNELMTLIDRLKAILGDEKLLWREIKKELKDIRDR 481

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---- 541
           +        RR+T  ++        ++ +I  E + + ++  G+++  K  +        
Sbjct: 482 YGDE-----RRSTITQLEED---ISKEDLIAVEDMVITMTRAGYLKRTKLDAYRAQSRGG 533

Query: 542 ----ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL---I 594
                   +E D         T D +L  +  G+ +     +L       +   +     
Sbjct: 534 RGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRLFHEKIYDLPEAGRDAKGTHIKNLLP 593

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L  N+ + +      +D     +  + +G     +  +    T  G   L +  ++ + 
Sbjct: 594 GLRENESVASVLAIKDFDEAGSFVFATKRGMIKKTQIRDYGNITSAGLIALNLQDDDGLI 653

Query: 652 LV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFK--ICE 707
            V ++  GDH+ +   + + + F  +++ +  R  +GV     +DG     +       E
Sbjct: 654 GVGIQRDGDHIVLATSDGQAMRFGANEVRDTGRATQGVIGIRLRDGDHVVSMAVVPGDDE 713

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  +     +           RGG+G +      ++GK ++
Sbjct: 714 DSELLAISECGLGKRTPVSDYPSKGRGGLGVITLDVTEKTGKLVA 758



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 62/158 (39%), Gaps = 10/158 (6%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVV 617
           D I+L ++DG+A    A  +       + +   I L     +V+  V    D   +LL +
Sbjct: 662 DHIVLATSDGQAMRFGANEVRDTGRATQGVIG-IRLRDGDHVVSMAVVPGDDEDSELLAI 720

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           S  G       S+  +  R G   + +     + + + L      + + V+ +   ++  
Sbjct: 721 SECGLGKRTPVSDYPSKGRGGLGVITLDVTEKTGKLVALARVAGDEELMVLTQKGTVIRT 780

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
            ++++    R  +GV++ +  DG  +      +  + L
Sbjct: 781 RVEEVRVTGRNAQGVKIINLGDGDCVISAFPIRKEDEL 818


>gi|317970446|ref|ZP_07971836.1| DNA gyrase subunit A [Synechococcus sp. CB0205]
          Length = 843

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 240/774 (31%), Positives = 384/774 (49%), Gaps = 60/774 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K AR+VGEV+GK
Sbjct: 1   MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELIL 144
            HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE+R+  +  + +L
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLRALTTDSLL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+IP HN+ E+ +  L
Sbjct: 121 EDIESETVDFIDNFDGSQQEPTVMPARIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV--- 261
           ALI NPE++  +L  Y+ GPDFPTGG I+  R  I E Y  GRG   +R    +E V   
Sbjct: 181 ALIANPELTDRELTGYVSGPDFPTGGQIL-GRRGIREMYETGRGSVTMRGVAAIETVEAK 239

Query: 262 -GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  D   ++    R  
Sbjct: 240 GRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDA 299

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
            P +++ ++F L+ +++ F   M  L     P ++ L  +L+ +L  R E + RR+ + +
Sbjct: 300 YPQVVLNNLFKLTPLQSNFSAYMLALV-NGEPVLLTLRKMLQVFLDFRVETIERRTRYLL 358

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLR 437
           +  + R  IL GLLIA  N+D IIA+IR            V +F L+E Q DAIL ++LR
Sbjct: 359 RKAEERDHILLGLLIALDNLDAIIALIRGAADTASARLELVEQFGLSEVQADAILQMQLR 418

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  LE  +I+ E ++LLA+      +L   ++ +  I  E+  ++  +        RRT
Sbjct: 419 RLTALEADKIRLEHEDLLAKITDYKDILARKERVYGLITDELGVIRSRYDSP-----RRT 473

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGD 549
              +V    +      +I  E   V+++  G+++ +           +   +    +  +
Sbjct: 474 EILDVEGGLEDI---DLIANERSVVLLTENGYLKRMPVSEFEATSRGTRGKAGTKTQGEE 530

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV 607
           ++++ +  +  D +LL S  G  YT+PA  +       +   I  L+ +   + I +   
Sbjct: 531 AVRLFISCNDHDSLLLFSDRGVVYTVPAYRVPMCSRAAKGTPIVQLLPIPREEQITSLLA 590

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAV 663
              +     L++++S G       S        G   + +   + +  V     GD V +
Sbjct: 591 VSEFTEDAVLVMLTSGGYVKRTRLSAFANIRSNGLIAISLEEGDALTWVRLAQPGDSVLI 650

Query: 664 VGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVI------------------- 701
              N   + F +    +  + R  +GVR  + + G     +                   
Sbjct: 651 GSRNGMTIHFRLSDEELRPLGRTARGVRAMNLRPGDQLVSMDVLPVELADRVEGSSAASD 710

Query: 702 -----CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                     EG   + ++     +        + KR G+G    K F R G  
Sbjct: 711 EDDTEEVAPSEGPWVLVASASGLGKRVPVDQFRIQKRAGMGLRAMK-FRRDGDV 763



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVS-SEEKMKLVVK 655
           ++D            +LV S+ G    V   +     R G     +K     + +  +  
Sbjct: 710 DEDDTEEVAPSEGPWVLVASASGLGKRVPVDQFRIQKRAGMGLRAMKFRRDGDVLVGLRV 769

Query: 656 V-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
           +  G+ + +V E   ++    D +P+ SR   GV+LQ    G     +     
Sbjct: 770 LGAGEELLLVSERGVIVRMQADAVPQQSRAATGVKLQRLDSGDRLSEVVLVPP 822


>gi|124026229|ref|YP_001015345.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL1A]
 gi|123961297|gb|ABM76080.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
          Length = 872

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 237/793 (29%), Positives = 392/793 (49%), Gaps = 58/793 (7%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S      ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL
Sbjct: 9   STGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRILYAMYELGL 68

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  + PLI G GNFG++D D  
Sbjct: 69  TSDRPYRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPP 128

Query: 127 AAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AA RYTE+R+  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG+SGIAV
Sbjct: 129 AAMRYTESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLLNGSSGIAV 188

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALI NPE+    L+  I GPDFPTGG I+  R  I E+Y  
Sbjct: 189 GMATNIPPHNLAELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQIL-GRSGIKETYLS 247

Query: 246 GRGGFRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           G+G   +R    +E +          +++TE+PYQ  K+ LIE+IA+++  K++  + DI
Sbjct: 248 GKGSITMRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKKLEGIADI 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   ++    R   P +++ ++F L+ ++T F  NM  L     P ++ L  +L
Sbjct: 308 RDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALV-NGEPVILSLRKML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVMV 418
           + +L  R E + +R+ + ++  + R  IL GLL+A   +DEI   I    +    K  + 
Sbjct: 367 QVFLDFRVETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTTAKNKLQ 426

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               LT+ Q DAIL ++LR L  LE  +I+ E ++L+ +   +  +LN  ++ +     E
Sbjct: 427 ELHGLTDIQSDAILQMQLRRLTALEADKIRLEHEDLVKKIIDLKDILNKKERVFEITKIE 486

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+KE ++      +RRT   ++    +      +I  E   V+++  G+++ +  +  
Sbjct: 487 LNEIKEKYNT-----QRRTEILDLGGGLEDI---DLIANERSVVLLTETGYLKRMPVNEF 538

Query: 539 --------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
                     +    +  + +K  +  +  D +LL S  G +Y LPA  +       +  
Sbjct: 539 EATSRGTRGKAGTRSQGEEEVKKFISCNDHDSLLLFSDRGISYALPAYRVPQCSRTAKGT 598

Query: 589 AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            I  L+ +   + I +      +D    LL+++  G       S        G   + + 
Sbjct: 599 PIVQLLPIPREEAITSLLSVSSFDDENYLLMLTRGGYIKRTPLSAFSKIRANGLIAIGLE 658

Query: 646 SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGGISDVI 701
             + +  V     GD V +  +N   + F +   ++  + R  +GV+  + K G     +
Sbjct: 659 DGDALTWVRLAESGDSVLIGSKNGMTIHFRLNDSELRPLGRSARGVKSMNLKSGDSLVSM 718

Query: 702 CFKICE---------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                E                     G   + ++G    +        L KR G+G   
Sbjct: 719 DVLSTELADHVDKSEEDELQSESSESEGPWVLVASGSGLGKRVPMTQFRLQKRAGMGLRA 778

Query: 741 PKGFPRSGK-FLS 752
            K F + G   + 
Sbjct: 779 IK-FRKDGDELVG 790



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKV-SSEEKMKLVVKV-TGDHVAVVGENRK 669
           +LV S  G    V  ++     R G     +K     +++  +  +  G+ + +V E   
Sbjct: 749 VLVASGSGLGKRVPMTQFRLQKRAGMGLRAIKFRKDGDELVGLRVLGKGEELLLVSERGV 808

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
           ++  S D+I + SR   GVR+Q   +G     +     E +
Sbjct: 809 IVRTSADKISQQSRAATGVRIQKLDNGDKLSEVVLVPPEQI 849



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 2/103 (1%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L+ S  G    +P       +  G  ++ +       ++V   V     +LL+VS +
Sbjct: 747 PWVLVASGSGLGKRVPMTQFRLQKRAGMGLRAIKFRKDGDELVGLRVLGKGEELLLVSER 806

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
           G        +I   +R   G    K+ + +K+  VV V  + +
Sbjct: 807 GVIVRTSADKISQQSRAATGVRIQKLDNGDKLSEVVLVPPEQI 849


>gi|148377826|ref|YP_001256702.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2]
 gi|148291872|emb|CAL59263.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2]
          Length = 919

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 241/764 (31%), Positives = 402/764 (52%), Gaps = 32/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              ++ +  + +   ++  +L YA+S I  RA+PD RDG KPVHRRI++ MSE+G+  G 
Sbjct: 69  ETEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             +KSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPLI   GNFG+IDGD AAA R
Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDSHGNFGSIDGDQAAAMR 188

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++VA L+L+G+ +D VDF D Y+  + EP V PS+FPNLL +G SGIAVGMATS
Sbjct: 189 YTEARMSKVAALMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A +AL  NPEISI +++E++ GPDFPTG +I    + I E+Y  G+G  
Sbjct: 249 IPPHNLAETIDATIALAKNPEISISEIMEFLPGPDFPTGAMI-MGTKGIKEAYETGKGSI 307

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR+   +E +  G   I+V+EIPY+++K+ +IEKIA+L+  K I  + D+RDES  +  
Sbjct: 308 SVRSIAKIEHLQNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGI 367

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +   P++++  ++  + +++ + +N   L     P+++ +   L+ +L H+  
Sbjct: 368 RIIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVD-GEPKLLNIKYALEVYLKHQEN 426

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQ 427
           V+ RR  F +     R+ IL+GL IA  NIDE+I II++    +    +   RF L+E Q
Sbjct: 427 VVTRRLRFDLNKAKDRMHILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSTRFDLSEKQ 486

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+++RL  L  L    +  E+ NL AE E+I ++L +       I  E+ E+K  ++
Sbjct: 487 TKAIVDMRLGRLTGLAVDSMIEEMQNLAAEIERITNILANRDLLIELIIDELTEIKNKYA 546

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   +   A  +   + +I K  I +  S +G+++          +   V 
Sbjct: 547 DE-----RRTVIDKNISA--SINDEDLISKRDIVITTSTKGYVKRIDLEEYKTQRRGGVG 599

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----LI 594
           ++ +     D +   +   T   +L+ +  G+ Y + A  +       +          +
Sbjct: 600 ITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRAHEIPELNRQSKGTSFINIIPRL 659

Query: 595 DLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            ++  + +++    D       L   +  G       SE       GK    +  E+++ 
Sbjct: 660 KVDEGEKVISMLAVDEYSDDKYLFTATKLGIIKKTSLSEFQIININGKRAFNLKEEDELI 719

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
               +  D  + +    ++++ F  ++   +SR   GV+  +  +     +      EG 
Sbjct: 720 RASIIDDDELILLANSKQRIVKFHSNEFRALSRIATGVKGITLAEDET-CISASSSSEGE 778

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      + +  +  L  L  RGG G +      ++G  + +
Sbjct: 779 LILTIGKNGFGKITHHSLFRLVHRGGKGVIGIN-SDKAGNLVFA 821



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMK 651
           I L  ++  ++A        +L +   G   I   S      R GK  + ++S++   + 
Sbjct: 760 ITLAEDETCISASSSSEGELILTIGKNGFGKITHHSLFRLVHRGGKGVIGINSDKAGNLV 819

Query: 652 LVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
               V   D + ++  +   +   I  I E  R  KGV+L + K       +     E  
Sbjct: 820 FARFVNPHDEILMITTSGLTIRIPIKDINETGRATKGVKLINLKKKEQIQAVEIVKLESD 879

Query: 710 TWIDSA 715
           + +D  
Sbjct: 880 STLDET 885


>gi|148241841|ref|YP_001226998.1| DNA gyrase subunit A [Synechococcus sp. RCC307]
 gi|147850151|emb|CAK27645.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
          Length = 859

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 236/786 (30%), Positives = 386/786 (49%), Gaps = 54/786 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 10  PSERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTAERPY 69

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYT
Sbjct: 70  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRAPLIDGHGNFGSVDNDPPAAMRYT 129

Query: 133 EARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+I
Sbjct: 130 ESRLQSLTTDSLLEDIESETVDFIDNFDGSQQEPTVLPARVPQLLLNGSAGIAVGMATNI 189

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  LALI +P+I   +L+  I GPDFPTGG I+  R+ I E+Y  GRG   
Sbjct: 190 PPHNLGELIDGVLALIADPQIEERQLMSIIPGPDFPTGGQIL-GRKGIRETYTGGRGSIT 248

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  
Sbjct: 249 MRGVAAIETIEAKGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLEGIADIRDESDR 308

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ +++ L+ ++  F      L     P V+ L  +L+ +L  
Sbjct: 309 DGMRIVIELRRDAYPQVVLNNLYKLTPLQNNFSAYTLALVK-GEPVVLNLKRMLEVFLDF 367

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLT 424
           R E + RR+ + ++  + R  IL+GLL+A  ++D II +IRN            +   L+
Sbjct: 368 RIETIERRTKYLLRKAEERDHILQGLLVALNDLDAIIQLIRNAADAATARQGLVNDHGLS 427

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I+ E ++L+A+      +L   ++  + I  E+R++KE
Sbjct: 428 EIQADAILQMQLRRLTALEADKIRLEHEDLIAKIADYKDILQRRERVLSIIEEELRQLKE 487

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-----KEPITVVISNRGWIRSLKSHSVD 539
             +       RRT   ++    +     A         E   +         S    +  
Sbjct: 488 RHNTP-----RRTEILDLEGGLEDIDLIANERSVVLLTENGYLKRMPVSEFESTSRGTRG 542

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
            +    +  +++++ +  +  D +LL S  G  Y+LPA  +       +   +  L+ + 
Sbjct: 543 KAGTKSQGEEAVRLFISCNDHDSLLLFSDRGVVYSLPAYRVPIASRAAKGTPVVQLLPIP 602

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I +      ++   +L+++++ G       S        G   + +   + ++ V 
Sbjct: 603 REEQITSLLAVSAFEEDVQLVMLTTGGFIKRTPLSAFSNIRANGLIAINLEDADSLRWVR 662

Query: 655 KV-TGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISDVICFKICE--- 707
               GD V +   N   + F I+   +  + R  +GVR  + +DG     +     E   
Sbjct: 663 LARAGDSVLIGSINGMTIHFRINDQDLRPLGRTARGVRAMALRDGDSLVSMDVLPAELAD 722

Query: 708 --------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                               G   + +      +        L +R G+G    K F R 
Sbjct: 723 RIAAAGEASDGESEEAASSDGPWVLVATASGLGKRVPVDQFRLQRRAGLGLRGIK-FRRD 781

Query: 748 GK-FLS 752
           G   + 
Sbjct: 782 GDALVG 787



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVS-SEEKMKL-VVKVTGDHVAVVG 665
               +LV ++ G    V   +     R G     +K     + +    V    + + +V 
Sbjct: 742 DGPWVLVATASGLGKRVPVDQFRLQRRAGLGLRGIKFRRDGDALVGLCVMGAEEELLLVS 801

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           E   ++    D IP+ SR   GVRLQ    G     +     E  T
Sbjct: 802 ERGVIVRLQSDVIPQQSRAATGVRLQRLDKGDRLAEVVLVPPEAET 847


>gi|332186872|ref|ZP_08388614.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. S17]
 gi|332013205|gb|EGI55268.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. S17]
          Length = 750

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 380/754 (50%), Positives = 505/754 (66%), Gaps = 9/754 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M +D   N        +       AL ERYL YALSTI  R++PD+RDG KPVHRR++ A
Sbjct: 1   MAIDLRDNPPV----GILDAPFDSALSERYLVYALSTITARSLPDVRDGLKPVHRRLLWA 56

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + LD  A +KK AR+VG+VIGK HPHGDQSVYD++VRLAQ F  RYPL+ GQGNFGN
Sbjct: 57  MRLLKLDPAAGYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGN 116

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAAYRYTEAR+TQVA  ++ G+DEDAV +R TYN E+ EP +FP  FPNLLANG 
Sbjct: 117 IDGDNAAAYRYTEARLTQVAIDLMDGLDEDAVAYRPTYNGEEQEPELFPGLFPNLLANGA 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIP HN  E+ +AA+ ++D+P+   + +L  + GPDFPTGGI+V++   + 
Sbjct: 177 SGIAVGMATSIPPHNAAELLDAAIHVVDHPDADDDAILARVKGPDFPTGGIVVDAPAILR 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ESY  GRGGFRVRARW +E    G W IVV+EIPY V K +LIE+IA LI  K++P+L D
Sbjct: 237 ESYTTGRGGFRVRARWEIEREKGGGWQIVVSEIPYGVAKGKLIEQIATLINDKKLPILAD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES   VRIVL P++R++DP +LM+ +F  SD+ETR  LN+NVL   R P+VM L   
Sbjct: 297 VRDESDAQVRIVLEPRSRTVDPQVLMDGLFRFSDLETRISLNLNVLDKDRTPRVMSLREA 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L  W+ H+  VL RRS  R+  I  R+E+L G L+AYLN+D +I IIR ED+PK VM+  
Sbjct: 357 LAAWVEHQFVVLRRRSEHRLGKIADRIELLDGYLVAYLNLDRVIEIIRTEDEPKAVMIEE 416

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F LT+ Q +AILN+RLRSLR+LEE++I+ E D L  E+E++  LL S ++Q  ++  ++ 
Sbjct: 417 FRLTDRQAEAILNMRLRSLRRLEEFEIRGERDKLDKEREQLTQLLGSEQRQRTRMKKDLG 476

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD- 539
           ++++ +   T LG RRT   E +   +    +AMIE+EPITV++S RGWIR++K H    
Sbjct: 477 KIRDRYGLETILGARRTLIEEAAPT-RDIPLEAMIEREPITVILSQRGWIRAMKGHVDLA 535

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                 FKEGD    A HA TTD++LL + +G+ +TL A  L  GRG GE ++ +IDL+ 
Sbjct: 536 SAETAKFKEGDGPAFAFHAQTTDKLLLAAANGRFFTLAADKLPGGRGFGEPVRAMIDLDG 595

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656
           +  IV         KLLV +S G  FIV  ++ IA TRKGKT L   +   +K+V  V  
Sbjct: 596 SIGIVGFLPAARAAKLLVAASDGRGFIVPAADTIAETRKGKTVLTPRAGASLKVVRPVGA 655

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             D+VA +G+NRKLL+F + +  E+SRG GV+LQ Y+DGG+SD   F   +GL+W     
Sbjct: 656 EDDYVAAIGDNRKLLVFPLTEFVELSRGTGVQLQRYRDGGLSDATTFVFKDGLSWPMGGE 715

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               R+E DL  W   RG  G + P GFPR  +F
Sbjct: 716 TGRVRTEADLSAWRTARGAAGRMPPTGFPRDNRF 749


>gi|294011464|ref|YP_003544924.1| topoisomerase IV subunit A [Sphingobium japonicum UT26S]
 gi|292674794|dbj|BAI96312.1| topoisomerase IV subunit A [Sphingobium japonicum UT26S]
          Length = 762

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 377/764 (49%), Positives = 519/764 (67%), Gaps = 21/764 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++      + +K      AL +RYL YALSTI  R++PDLRDG KPVHRR++ AM  + 
Sbjct: 1   MTDFRDPF-DAIKDHPFDDALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLK 59

Query: 66  LDFGAA---------------FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           ++ G A               +KK AR+VG+VIGK HPHGD SVYD++VRLAQ F  R P
Sbjct: 60  MEPGGASPDVLVANPARNTTSYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTP 119

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFGNIDGD+AAA RYTEAR+TQ A  ++ G+DE  V+FR TYN ED EP VFP 
Sbjct: 120 LVDGQGNFGNIDGDNAAAMRYTEARLTQAAADLMAGLDEGTVEFRPTYNGEDQEPEVFPG 179

Query: 171 KFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGG 230
            FPNLLANG SGIAVGMATSIP HNV E+ +AA  LIDNP+    +L+  + GPDFPTGG
Sbjct: 180 LFPNLLANGASGIAVGMATSIPPHNVAELIDAASLLIDNPDAEHAELMRIVRGPDFPTGG 239

Query: 231 IIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
           ++V+S   I E+Y  GRG FR RARW  E+ GRG+W  VVT+IP+QVQKS+LIE+IA LI
Sbjct: 240 VLVDSPSIISEAYATGRGSFRTRARWHKEDGGRGTWVAVVTQIPFQVQKSKLIEQIAALI 299

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
             +++P+L D+RDES E +RIV+ P+ R++DPD+LM+S+F L+D+E RFPLN+NVL   R
Sbjct: 300 NDRKLPILADVRDESDELIRIVIEPRARTVDPDVLMDSLFRLTDLENRFPLNLNVLDATR 359

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
            P+V+ L  +L EWL H+ +VL +R+  R+  I  R+E+L G +IAYLN+D +I IIR E
Sbjct: 360 TPRVLGLKPVLIEWLKHQIDVLVKRAQHRLDKIAARLELLDGYIIAYLNLDRVIEIIRTE 419

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           D+PK VM++ F L + Q +AILN+RLRSLRKLEE +++ E   LL E++ +  L+ S  +
Sbjct: 420 DEPKEVMMAEFGLNDRQAEAILNMRLRSLRKLEEMELRREHSELLKERDDLIKLVESPAR 479

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
           Q  ++  ++ ++++ +S  +D GRRRT   E + A +    +AMIEKEPITV++S RGWI
Sbjct: 480 QRTRLKKDLADLRKRYSPDSDFGRRRTLVEEAAPA-REIPLEAMIEKEPITVILSERGWI 538

Query: 531 RSLKSHSVD--LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           R++  H        L FKEGD   IA HA TTD++LL +  G+ +TL A  L  GRG G+
Sbjct: 539 RAMSGHRDLASADTLKFKEGDGPMIAFHAQTTDKLLLATETGRIFTLGADKLPGGRGFGD 598

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            ++ L+D++    IV      +  +LL+ SS G  F+   +++IA TRKGK  + V +  
Sbjct: 599 PVRSLVDMDGTGQIVALMPARTGGELLLASSDGRGFVAAVADVIAETRKGKQVVNVRTGA 658

Query: 649 KMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC 706
           K+ +V  +    D VAVVGENRKLL+FS+ ++P M+RG+GV++Q Y+DGG+SD I F++ 
Sbjct: 659 KLSVVHPIAPDADSVAVVGENRKLLVFSLIEMPRMARGQGVQMQRYRDGGLSDAIAFRLS 718

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +GL+W    G    R+E D+  W   RG  G + P GFPR  +F
Sbjct: 719 DGLSWAMGGGTGRVRTEADMTPWRVARGAAGRMPPTGFPRDNRF 762


>gi|182679031|ref|YP_001833177.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634914|gb|ACB95688.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 929

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 264/852 (30%), Positives = 405/852 (47%), Gaps = 112/852 (13%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D+  N       ++K VSL   ++  YLAYA+S I  RA+PD+RDG KPVHRRI+ +M E
Sbjct: 3   DHDENGQGPGGSDIKPVSLSDEMQSSYLAYAMSVIVSRALPDVRDGLKPVHRRILFSMHE 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
                   + KSARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG++DG
Sbjct: 63  NNHTPDRPYVKSARIVGDVMGKYHPHGDTAIYDALVRMAQGFSMRLPLIDGQGNFGSVDG 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTE+R+ + A  +L  +D D VDF+  Y+ ++ EPVV P++FPNLL NG  GI
Sbjct: 123 DPPAAMRYTESRLARPALALLADIDSDTVDFQPNYDGKEHEPVVLPARFPNLLVNGAGGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A +ALIDNPE+SIE+L   + GPDFPTGG I+  R  I  +Y
Sbjct: 183 AVGMATNIPPHNLGEVIDAVIALIDNPEMSIEELTAIVPGPDFPTGGSIL-GRAGIRSAY 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +RA+  +EE+      ++VTEIPYQV K+ LIEKIAEL+  KRI  + D+RD
Sbjct: 242 ATGRGSVLMRAKIEIEEIREKREALIVTEIPYQVNKATLIEKIAELVREKRIEGISDLRD 301

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      ++    R   PD+++  ++  + +++ FP NM  L+ G  P+ + L   L  
Sbjct: 302 ESDRQGMRIVIEIKRDAVPDIVLNQLWRYTALQSSFPCNMIALN-GGRPETLTLRDFLTA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------- 410
           ++  R EV+ RR+ + +        +  GL IA  NIDE+I +IR               
Sbjct: 361 FIDFREEVVTRRTKYLLGKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAEARAALCAR 420

Query: 411 ----------------DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                            +          L+E Q  AIL LRL+ L  L   +I   L+ L
Sbjct: 421 DWPARDMAPLIALIADPRHTLTPEGTIRLSEAQARAILELRLQRLTALGRDEIAENLNKL 480

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
            AE      +L S  + +  I  E+  VKE  +       RRT   +   +D     + +
Sbjct: 481 AAEIADYLDILGSRARLFGIIKDEMIAVKEAHATP-----RRTIILD---SDAGVDDEDL 532

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V +S+ G+I+          +      S +  ++ D +     A T   +L  
Sbjct: 533 IQREDMVVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQTRDQDFVARLFVASTHAPVLFF 592

Query: 567 STDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVS 618
           S+ G+ Y      L        G+A+  ++ L  ++ I T        K      ++  +
Sbjct: 593 SSRGQVYKEKVWRLPLSAPQALGKALVNILPLEQDERITTIMPLPEDEKQWESLDVMFAT 652

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           ++G     + S+     R GK  +++   E++  V   T  D V +   N + + F++  
Sbjct: 653 TRGTVRRNKLSDFAQVNRAGKIAMRLDEGEQIVDVQICTEQDDVLLTTANGQCIRFAVTD 712

Query: 678 IPE-MSR-GKGVRLQSYKDGG-ISDVICFKICEGLT------------------------ 710
           +     R   GVR  +  +G  +  +   +  E  +                        
Sbjct: 713 VRVFKGRDSMGVRGIALGEGDRVISLAILRHIEADSDERTAYLKRRRAVAGETAEEAASE 772

Query: 711 -----------------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                                         +  +   Y +  +     +  RGG G +  
Sbjct: 773 AEEANAEEALGSTSLSLERYAEMSAGEQIILTISANGYGKRTSSFEYRITGRGGKGIVAM 832

Query: 742 KGFPRSGKFLSS 753
               R+GK ++S
Sbjct: 833 AVNARNGKLVAS 844



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 16/108 (14%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKT----FLKVSSEEKMKLVVKVTGDHVAVVGE 666
              +L +S+ G        E     R GK      +   + + +  +    GD + +V  
Sbjct: 799 EQIILTISANGYGKRTSSFEYRITGRGGKGIVAMAVNARNGKLVASMPVEEGDGIMLVTN 858

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             +L+   ++ I    RG               VI F   E    +  
Sbjct: 859 GGQLIRCPVEGIRVAGRGT------------QGVIVFNTAEDEQVVSV 894



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 2/90 (2%)

Query: 658 GDHVAV-VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G+ + + +  N      S  +     RG KG+   +        V    + EG   +   
Sbjct: 798 GEQIILTISANGYGKRTSSFEYRITGRGGKGIVAMAVNARNGKLVASMPVEEGDGIMLVT 857

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                         +  RG  G +V     
Sbjct: 858 NGGQLIRCPVEGIRVAGRGTQGVIVFNTAE 887


>gi|78213459|ref|YP_382238.1| DNA gyrase subunit A [Synechococcus sp. CC9605]
 gi|78197918|gb|ABB35683.1| DNA gyrase, A subunit [Synechococcus sp. CC9605]
          Length = 865

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 233/780 (29%), Positives = 388/780 (49%), Gaps = 53/780 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K 
Sbjct: 18  RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE+R
Sbjct: 78  ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137

Query: 136 MTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+IP H
Sbjct: 138 LRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPH 197

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   ALI NPEI+ ++L++ I GPDFPTGG I+  RE I E+Y  GRG   +R 
Sbjct: 198 NLNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQIL-GREGIRETYLGGRGSVTMRG 256

Query: 255 RWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
              +E +          +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  D  
Sbjct: 257 VANIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGISDIRDESDRDGM 316

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ ++F L+ +++ F   M  L     P ++ L  +L+ +L  R E
Sbjct: 317 RIVVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALV-NGEPILLTLRKMLEVFLDFRVE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
            + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L++ Q
Sbjct: 376 TIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHGLSDIQ 435

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ +++E + 
Sbjct: 436 ADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQSELAQLQERYP 495

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVD 539
                  RRT   ++           +I  E   V+++  G+++ +           +  
Sbjct: 496 TP-----RRTEILDLGGGLSDI---DLIANERSVVLLTETGYLKRMPVSEFEATSRGTRG 547

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
            +    +  D++K+ +  +  D ++L S  G +Y LPA  +       +   +  L+ + 
Sbjct: 548 KAGTRSQGEDAVKLFISCNDHDTLVLFSDRGVSYALPAYRVPQCSRAAKGTPVVQLLPIP 607

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I T      +     L++++  G       S        G   + +   + +  V 
Sbjct: 608 REEAITTLIPVSEFSDDTDLVMLTRGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTWVR 667

Query: 655 K-VTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICE--- 707
             V GD V +  +    + F +    +  + R  +GVR  + +D      +     E   
Sbjct: 668 LAVPGDSVLIGSKAGMTIHFRLSDEELRPLGRTARGVRSMNLRDADALVSMDVLPVELAD 727

Query: 708 ---------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                          G   + ++     +        L KR G+G    K    + + + 
Sbjct: 728 QVAASADDEDDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVG 787



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLV-VKVTGDHVAVVGENRK 669
           +LV S+ G    V  ++     R G     +K  ++ +++  + V   G+ + +V E   
Sbjct: 746 VLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVGLSVLGAGEELLLVSEKGV 805

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           ++  S D IP+ SR   GVRLQ    G     +     E   
Sbjct: 806 IVRTSADAIPQQSRAATGVRLQKLDKGDRLLKVVLVPPEAED 847


>gi|4176379|dbj|BAA37152.1| topoisomerase IV subunit [Pseudomonas aeruginosa]
          Length = 754

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 271/757 (35%), Positives = 435/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++ +L E++ GPDFPT   I+  R  + + Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA +  E+       IV+  +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRFEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM  +F  +D+ET + +N+N++ +   P V  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPAVKDLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF 
Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S  +    +  E+ + 
Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEARALSETELM-PTEPVTVVLSEKGWVRCAKGHDIDAAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y+LPA +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +   +     V     D
Sbjct: 590 ECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F +  +P++ +GKG ++       ++        +          + 
Sbjct: 650 WLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+ +   +DL  + G+RG  G+ +P+GF R    
Sbjct: 710 AGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSL 746


>gi|311897313|dbj|BAJ29721.1| putative DNA gyrase subunit A [Kitasatospora setae KM-6054]
          Length = 867

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 232/776 (29%), Positives = 379/776 (48%), Gaps = 28/776 (3%)

Query: 2   GVDNISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           G +   +S T  +    V+ + L   ++  YL YA+S I  RA+P++RDG KPVHRR+++
Sbjct: 9   GGEQPEDSTTPAQAGNRVELIELETEMQRSYLDYAMSVIVSRALPEVRDGLKPVHRRVLY 68

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G      + K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+ G GNFG
Sbjct: 69  AMYDGGYRPEKGYYKCARVVGDVMGNYHPHGDTSIYDTLVRLAQPWSMRMPLVDGNGNFG 128

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +   D AAA RYTE +M  +A  +++ +DE+ VDF   Y+    EP V PS+ PNLL NG
Sbjct: 129 SPGNDPAAAMRYTECKMMPLAMEMMRDIDEETVDFAANYDGRQQEPTVLPSRIPNLLVNG 188

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVES 235
            +GIAVGMAT+IP HN++E+   AL  +++P  S E+    L+E I GPDFPTG  ++  
Sbjct: 189 ATGIAVGMATNIPPHNLREVASGALWALEHPGASNEELLEALVERIKGPDFPTGA-LIVG 247

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I ++YR GRG   +RA   VEE+ +G  C+V+TE+P+QV    L  KIA+L+   RI
Sbjct: 248 RRGIEDAYRTGRGSITMRAVVEVEEI-QGRQCLVITELPFQVNPDNLALKIADLVKDGRI 306

Query: 296 PLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L    VP+ 
Sbjct: 307 AGIADVRDESSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GVPRT 365

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           + LD  ++ W+AH+ EV+ RR++FR++  + R  IL+ LL A   ID +IA+IR  +   
Sbjct: 366 LSLDAFIRHWVAHQIEVIVRRTTFRLRKAEERAHILRALLKALDQIDAVIALIRASESAD 425

Query: 415 PVMVSRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                      + E Q +AIL ++LR L  LE  +I SE D L A+  + +++L S  +Q
Sbjct: 426 AARTGLMRLLDIDELQANAILEMQLRRLAALESARILSEHDELQAKINEYNAILASPARQ 485

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              ++ E+  + E +          +          A     +       V  +     R
Sbjct: 486 REIVSEELTAIVEKYGDERRSTLIPSDGDLSIEDLIAEEDIVVTITRGGYVKRTRSDLYR 545

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEA 589
           S K     +     K+ D +       T + IL  +  G+ Y      L        G+ 
Sbjct: 546 SQKRGGKGVRGAQLKQDDIVDHFFVTTTHNWILFFTNKGRVYRAKGYELPDAGRDARGQH 605

Query: 590 IQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS- 645
           +  L+     + I        Y+    L++ +  G        +  +    G   + +  
Sbjct: 606 VANLLAFQPEEHITQVMAVRTYEDKPYLVLATRGGLVKKTPLKDYDSPRSGGLIAINLRQ 665

Query: 646 ----SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGI 697
                 +++     V+  D + ++    + + F      +  MSR   GV+  ++++   
Sbjct: 666 DEEGQGDELIGAELVSADDDLLLISRKAQSIRFKATDEALRPMSRATSGVKGMAFREDDE 725

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +   +  G     +    Y +  +     +  RGG G    K     G  + +
Sbjct: 726 LLSMNV-VRPGTYVFTATDGGYAKRTSVDEYRVQGRGGFGIKAAKIVEGRGSLVGA 780


>gi|153214093|ref|ZP_01949227.1| topoisomerase IV, subunit A [Vibrio cholerae 1587]
 gi|124115519|gb|EAY34339.1| topoisomerase IV, subunit A [Vibrio cholerae 1587]
          Length = 761

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 284/751 (37%), Positives = 444/751 (59%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRQFTEEAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 LQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|241204655|ref|YP_002975751.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858545|gb|ACS56212.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 945

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 246/841 (29%), Positives = 399/841 (47%), Gaps = 115/841 (13%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALID+P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R   
Sbjct: 196 SEVIDGCIALIDDPAIELPELIQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+
Sbjct: 315 KRDANADVILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------------------ 412
            F ++    R  +L GL IA  NIDE+I +IR                            
Sbjct: 374 KFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433

Query: 413 -----PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                 +      ++L+E Q  AIL LRL  L  L   +I  EL+ +  E +    +L+S
Sbjct: 434 IDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   +          + +I +E + V +S+ 
Sbjct: 494 RVRIQTIVKDELLAVRDEFGTP-----RRTEIVDGGLEMD---DEDLIAREDMVVTVSHL 545

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  ++ D +      +T   +L  S+ G  Y      
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDADFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L   +    G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 606 LPIGTPTSRGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRNKLSDF 665

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + FS+D +     R   GV
Sbjct: 666 VQVNRNGKIAMKLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGRNSIGV 725

Query: 688 RLQSYKDGGISDVICF--------------------------------------KICEGL 709
           R  +  D      +                                         I EG 
Sbjct: 726 RGINLGDSDRIISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEVIEEGQ 785

Query: 710 T--------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLS 752
                           +  + + + +  +     +  RGG G        ++   G+ ++
Sbjct: 786 LSDDRYDELRAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTS-KTAEIGELVA 844

Query: 753 S 753
           +
Sbjct: 845 A 845



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        +   + R GK        K +   ++     +  GD + +V
Sbjct: 798 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIGELVAAFPIDDGDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDV 700
            +  +L+   +  I   SR  KGV + S  KD  +  V
Sbjct: 858 SDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSV 895


>gi|56551950|ref|YP_162789.1| DNA topoisomerase IV subunit A [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543524|gb|AAV89678.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 748

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 378/740 (51%), Positives = 516/740 (69%), Gaps = 5/740 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+   +   AL ERYLAYALSTI  R++PD+RDG KPV RR++ AM  + LD  +A+KK
Sbjct: 9   ENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKLDPASAYKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+VIGK HPHGDQSVYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 69  CARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAMRYTEA 128

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T  A  +++G++E AVDFR TYN E+ EP  F   FPNLLANG+SGIAVGMATSIP H
Sbjct: 129 RLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVGMATSIPPH 188

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV E+ +A   LID+PE   ++LL ++ GPDFPTGG IV+S  +I  +Y  GRG FRVRA
Sbjct: 189 NVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVNTIRHAYETGRGSFRVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R+ VE++GRG W IV+ EIP+Q+ KSRLIE+IA LI  K++P+L DIRDES E++RIVL 
Sbjct: 249 RYEVEDIGRGGWIIVINEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESDENIRIVLE 308

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+R++DP LLM+ +F L+ +ETR  LNMNVL     P V+PL  +LKEWLAH+  +L R
Sbjct: 309 PKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWLAHQFAMLQR 368

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R   R+Q ID RVE+L+G L AYLN+D +I IIRNED PK VM++ F L++ Q +AILN+
Sbjct: 369 RCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKSVMIAEFKLSDRQAEAILNM 428

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+L++LEE +I +E D+L  E+  + +L+ S   Q  ++  ++  +++ +S  + LG 
Sbjct: 429 RLRALKRLEEAEITAERDSLKEERAGLQALIESDALQSKKLKSDLSALRKRYSLKSKLGA 488

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL--K 552
           R+T   E + A KA    AMIE+EP+TVV+S RGWIR LK H    S    +  +     
Sbjct: 489 RQTLIEEQTPA-KAIPLDAMIEREPMTVVLSKRGWIRGLKGHVDLKSTEAMRFKEGDEAD 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
              HA+TTDR+L+ + DG+ YTL A  L  GRG GE ++L++D++++  I+     +   
Sbjct: 548 FICHAYTTDRLLIATEDGRFYTLLADRLPGGRGFGEPVRLMLDISNDTKIMALLPLNPEG 607

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKL 670
           KLLVVSS G  FI + + ++A TRKGK  ++V  +E + ++  +    DH+A++GENRKL
Sbjct: 608 KLLVVSSSGRGFITQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEDHDHIALIGENRKL 667

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L F + QIPE+++G GV+LQ Y+ G +SD   F + EGL+W         R+E D+  W+
Sbjct: 668 LAFPLSQIPELAKGSGVQLQRYRGGHLSDATTFTLEEGLSWPMGGESGRIRTETDMKTWV 727

Query: 731 GKRGGVGSLVPKGFPRSGKF 750
             RG  G L P GFP++ +F
Sbjct: 728 VARGASGRLPPVGFPKNNRF 747


>gi|293394327|ref|ZP_06638627.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Serratia odorifera DSM
           4582]
 gi|291423305|gb|EFE96534.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Serratia odorifera DSM
           4582]
          Length = 757

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 281/756 (37%), Positives = 450/756 (59%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSD---LTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLAELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  AA+ALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+
Sbjct: 178 VGMATDIPPHNVREVAAAAVALIDKPGASLDELLEFVQGPDFPTEAEIITPRDEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 NGRGSVRMRAVWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + +M  +F  +D+E  + +NMN++ +   P V  L  I+ 
Sbjct: 293 SDHENPTRLVIVPRSNRVDLEQVMNHLFATTDLERSYRVNMNMIGLDNRPSVKGLVEIIT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA RR+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR+ED+PKPV++ RF 
Sbjct: 353 EWLAFRRDTVRRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRSEDEPKPVLMQRFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RR+   E + A KA  +   +  EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 SLAYGDE-----RRSPLTERAEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+ + A    T   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LSYKAGDTFRAAARGKTNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S  G  F+   ++++A  R GK  + +    K    +++ GD   
Sbjct: 587 EQVIMAADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITLPENAKALPPMEIHGDDDM 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDS 714
           +  + +  ++L+F +  +P++S+GKG ++ S           +   +     +    +  
Sbjct: 647 LLSITKAGRMLMFPVADLPQLSKGKGNKIVSIPSAQAASGEDVLSWLFVLPPQTSLTLHV 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  G+L+P+G  R  + 
Sbjct: 707 GKRKLTLRPEDLQKFRAERGRKGTLLPRGLQRIDRV 742


>gi|116326861|ref|YP_796581.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329808|ref|YP_799526.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116119605|gb|ABJ77648.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123497|gb|ABJ74768.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 832

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 250/756 (33%), Positives = 399/756 (52%), Gaps = 26/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   ++E YL YA+S I  RA+PD+RDG KPVHRRI+HAM+E        + K 
Sbjct: 29  RVIPVEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKC 88

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEVIG  HPHGD SVY++LVR+ Q F  R PLI GQGNFG+IDGD+ AAYRYTEAR
Sbjct: 89  AKIVGEVIGNYHPHGDASVYEALVRMVQDFSLRVPLIDGQGNFGSIDGDNPAAYRYTEAR 148

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +VAE +L+ ++++ V F   Y++   +P V P+ FPNLL NG+SGIAVGMAT+IP HN
Sbjct: 149 LEKVAEELLRDIEKETVSFSPNYDDTKQQPDVLPANFPNLLVNGSSGIAVGMATNIPPHN 208

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E  +A +A+I NPEI+I ++L  I GPDFPT GII+   E ++ +Y  G+G  R+R++
Sbjct: 209 LKETIDAVIAVIRNPEITIPEILRIIPGPDFPTSGIIIG-GEGLISAYTTGKGSIRIRSK 267

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   IVVTEIPYQV K  L+EKI +++  K+I  + +I D S      +   
Sbjct: 268 VEIEEKKNGREVIVVTEIPYQVNKKVLLEKIGDIVNEKQIEGISEILDLSDRKGIRIEIH 327

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +  +++  ++ ++ ++  + + M  +   + P++  +  IL  + AHRR+V+ +R
Sbjct: 328 IKKDANAQVILNQLYKMTQLQVSYGITMLAILDNK-PKIFNIKEILTAYSAHRRDVIVKR 386

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAIL 432
           + F +   ++R  IL+GL IA  NI+++I +IR    P      ++ RFSL+E Q DAIL
Sbjct: 387 TQFDLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMVRFSLSEVQSDAIL 446

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE  +I  EL+ +      +  +L    +  + +  E++EV + +      
Sbjct: 447 EMRLQRLTSLEVQKIIDELEEVRKLIVDLKDILAKPSRINDIVCTELQEVGDKYGT---- 502

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALH 544
            +R+T     S    +   + +I  E + + I+   +         +  K     +  L 
Sbjct: 503 -KRKTEISIESIESSSFNAEDLIADEEMVIQITYDQFIKRLPIDTFKRQKRGGKGIQGLS 561

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            K  D +KI   A T D I+  S  GK Y + A  L   S    G++++ +I+L  ++ +
Sbjct: 562 QKRDDVIKIMKAAMTHDSIMFFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYV 621

Query: 603 VTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            + F +   D    LL+V+ +G    ++  E     + G   + +   +++  V  +   
Sbjct: 622 SSIFTFRGQDMDKDLLLVTKRGFIKRIQLKEFGNVKKSGIIAIGLREGDELIKVEAIEDK 681

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +  +    L    + I    R   GV      +     V   K  EG      +  
Sbjct: 682 DEVMIFSKKGLALRIEGNIIRAQGRTASGVTGMRLAEDDTI-VGLSKYKEGEDIFVVSEE 740

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RGG G    K   ++G  + +
Sbjct: 741 GYGKRLGFEEFAAKGRGGKGMAYLKVTEKNGFSVGT 776



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 6/165 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            + A+  +EGD L         D +++ S  G A  +   N++  +G   +    + L  
Sbjct: 660 GIIAIGLREGDELIKVEAIEDKDEVMIFSKKGLALRIEG-NIIRAQGRTASGVTGMRLAE 718

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEE--KMKLVV 654
           +  IV    Y     + VVS +G    +   E  A  R GK   +LKV+ +    +    
Sbjct: 719 DDTIVGLSKYKEGEDIFVVSEEGYGKRLGFEEFAAKGRGGKGMAYLKVTEKNGFSVGTGS 778

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
             + D V ++ +    +  +   I ++ R   GVR+   KD    
Sbjct: 779 VGSEDEVILITQQGMTIRINAFDISKLGRTAVGVRIVDLKDNDKV 823


>gi|192382554|gb|ACF04298.1| GyrA [Neisseria lactamica]
          Length = 912

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 240/848 (28%), Positives = 397/848 (46%), Gaps = 110/848 (12%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG  I      + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +RA+   E +G+      IV+ EIPYQV K++L+EKI EL+  K +  + 
Sbjct: 240 GYKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  +IDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSDIDEIIRLIKESPNAAEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLSRSWRSSLVEEMLTRSGLDLGMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L+  +I     NL+ +      +L+  ++    I  E+ E+K  +              
Sbjct: 479 GLDREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDER--------LS 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V  S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSN 710

Query: 667 NRKLLIFSI--------------------------DQIPEMSRGK-GVRLQSY------- 692
             K + F+                           D    +  GK GVR           
Sbjct: 711 LGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMRG 770

Query: 693 ----KDGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                DG I  +I F       GL  + +    Y +           +GG G++      
Sbjct: 771 MRLPADGKIVSLITFPAEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 830

Query: 746 RSGKFLSS 753
           R+G  +++
Sbjct: 831 RNGDLVAA 838



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 596 LNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
           L  +  IV+   + +       ++L  ++ G       ++     + G+  + +++ E+ 
Sbjct: 773 LPADGKIVSLITFPAEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN 832

Query: 650 --MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFK 704
             +     V   D + ++     L+   ++QI E  R   GV+L +  +G  +  +    
Sbjct: 833 GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVA 892

Query: 705 ICEGLTWIDSAGRS 718
             E  T +      
Sbjct: 893 EEETETDMPETEAG 906



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 792 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 851

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 852 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 881


>gi|327484922|gb|AEA79329.1| Topoisomerase IV subunit A [Vibrio cholerae LMA3894-4]
          Length = 761

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 285/751 (37%), Positives = 448/751 (59%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 LQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKANSREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|170723862|ref|YP_001751550.1| DNA topoisomerase IV subunit A [Pseudomonas putida W619]
 gi|169761865|gb|ACA75181.1| DNA topoisomerase IV, A subunit [Pseudomonas putida W619]
          Length = 752

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 273/757 (36%), Positives = 440/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATLEQLCEHIQGPDYPTEAEIITPRAEILKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTELESSYRVNVNIIGLDGRPQLKNLRALLL 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR   R++ ++RR+ +L+GLL A+LN+DE+I IIR E+ PK  +++RF 
Sbjct: 356 EWLQYRIGTVRRRLQHRLEKVERRLHLLEGLLTAFLNLDEVIHIIRTEEHPKQALIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLLALLGSDAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    +L+ + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSVAAHTLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     +V S  G  F+V+  ++ A  + GK  L + +  K+     V     D
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVISPRPVANREQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F +  +P++ +GKG ++       ++        +          + 
Sbjct: 650 WLAAVTTEGRLLVFKVADLPQLGKGKGNKIIGVPGDRVASREEYVTDLAVIPEGATLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+ +   +DL  + G+RG  GS +P+GF R    
Sbjct: 710 AGKRTLSLKPDDLEHYKGERGRRGSKLPRGFQRVDGL 746


>gi|238809855|dbj|BAH69645.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 854

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 399/753 (52%), Gaps = 31/753 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              ++ +  V +   ++  +L YA+S I  RA+PD RDG KPVHRRI+  M+E+G+ FG+
Sbjct: 86  DAPKDGIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGS 145

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             +KSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPL+ G GNFG+IDGD AAA R
Sbjct: 146 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMR 205

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +L+G+ +D VDF D Y+  + EP V PS+FPNLL +G SGIAVGMATS
Sbjct: 206 YTEARMSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATS 265

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A +AL +NPEI I  L+E++ GPDFPTG +I+     I ++Y  G+G  
Sbjct: 266 IPPHNLGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMIL-GNAGIKDAYLTGKGSI 324

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R+   +EE   G   I+VTEIPY+V+K+ +IEKIAEL+  K+I  + D+RDES+ +  
Sbjct: 325 PIRSIAKIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGI 384

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    ++++P +L+  ++  ++++  + +N   L     P+V+ L   L+ +L H+ E
Sbjct: 385 RIVIDVKKNVNPHVLLNKLYRQTNLQVNYNVNFVALVD-GEPKVLNLKQALEVYLRHQEE 443

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQ 427
           V+ RR  F +     R+ IL+GL IA  NIDE+IAII+          +   RF+LTE Q
Sbjct: 444 VVTRRLKFDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKRFNLTEKQ 503

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+++RL  L  L    +  E+  L  E E+I+ +L +  +    I  E+ E+KE ++
Sbjct: 504 TKAIVDMRLGRLTGLAIENMLEEMAELRKEIERIEFILANHSELIKLIVKELTEIKEKYN 563

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                 +RRT              + +I +  I +  S +G+++ +        +   V 
Sbjct: 564 D-----KRRTQI--NYEIQGTITDEDLIPQRDIVITTSAKGFVKRMDLEEYKTQRRGGVG 616

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-----AIQLLI 594
           +  +   + D +   L   T   +LL S   + Y + A  +       +      I   +
Sbjct: 617 IGTMKTYDDDDIASILTTTTHTDLLLFSNHARVYRVRAHEIPELSRQSKGVAFINIIPSL 676

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + IV+      YD    L   +  G       +E       GK    +   +++ 
Sbjct: 677 RVKEGERIVSMLPVDTYDEDHYLFTATKNGIIKKTRLTEYERINANGKYAFNLREGDELI 736

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             + +T +  + +  +  +++ F       +SR   GV+  +               EG 
Sbjct: 737 RAMIITDEDLILLANDEERIVKFQAIDFRPISRTATGVKGITLDSHQTVSSTS-TSQEGE 795

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +    + + +  +  L  L KRGG G     
Sbjct: 796 LILTIGKKGFGKLTHHSLFRLIKRGGKGVKGIN 828



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 17/41 (41%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           I +    I ++ + + +  +       +RGGVG    K + 
Sbjct: 584 IPQRDIVITTSAKGFVKRMDLEEYKTQRRGGVGIGTMKTYD 624


>gi|260904976|ref|ZP_05913298.1| DNA gyrase subunit A [Brevibacterium linens BL2]
          Length = 852

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 235/776 (30%), Positives = 384/776 (49%), Gaps = 38/776 (4%)

Query: 6   ISNSNTLVEE--NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +++ N +  E   V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM +
Sbjct: 1   MADENDIGTEINRVEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMFD 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      F K +R+VG+V+G+ HPHGD ++YD++VRL QP+  RYPL++GQGNFG+   
Sbjct: 61  GGYRPDRNFSKCSRVVGDVMGQYHPHGDSAIYDAMVRLVQPWTMRYPLVAGQGNFGSPGD 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE +M  +A  +++ ++E  VDF+D Y+  + EP V PS+FPNLL NG+SGI
Sbjct: 121 DGAAAPRYTECKMAPLALEMVRDIEEGTVDFQDNYDGRNQEPTVLPSRFPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+   A  L+ +PE S E+ LE     + GPDFP G  I+  R+ I
Sbjct: 181 AVGMATNIPPHNLREVAAGAQWLLSHPEASKEEALEALLGIVKGPDFPMGATIL-GRKGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG    RA   VEE+ +G  C+VVT++PY V    L  KIA  +   ++  + 
Sbjct: 240 EDTYRTGRGSITQRAVVEVEEI-QGRTCLVVTQLPYMVNPDTLAAKIASYVKDGKVAGIA 298

Query: 300 DIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           D+RDES+    + ++    R     +++ +++  + ++  F  NM  +    VP+ + LD
Sbjct: 299 DLRDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTSLQENFSANMLAIVDS-VPRTLSLD 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             L+ W+ H+ EV+ RR+ FR++  + R  IL+G L A   +DE+IA+IR          
Sbjct: 358 SFLRLWVKHQVEVIVRRTEFRLRKAEERAHILRGYLKALDALDEVIALIRRSPSSDEARS 417

Query: 419 SRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
                  + E Q +AIL+L+LR L  LE  +I+ E + +  +  +   +L +  +Q   +
Sbjct: 418 GLMDLLEVDEIQANAILDLQLRRLAALERLKIQEEAEKIEQQIAEFKYILATPARQREIV 477

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV------ISNRGW 529
           + E+ E+ E +        RRT        D +       E+  +T+        +    
Sbjct: 478 SEELDEIVERYGD-----DRRTKIMAGFDGDVSMEDLIPEEEVVVTITRGGYAKRTQNHL 532

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE- 588
            R+       +   + +  D ++      T + +L  +  G+ Y   A  L  G    + 
Sbjct: 533 YRAQHRGGKGIKGANLRGDDVVEQFFVTSTHNWLLFFTNTGRVYRAKAYELPEGSRDAKG 592

Query: 589 -AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             +  L+ L   + I        Y+    L++ +  G       SE  +N   G   + +
Sbjct: 593 QHVANLLALQPGETIAKVLSIRDYEEAEFLILATQSGVVKKTRLSEYDSNRTGGVIAINL 652

Query: 645 SS----EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG 696
                  +++     V + DH+ ++      + F+ D   I  + R   GV    +K G 
Sbjct: 653 REYKGQPDELVSARIVSSEDHLLMISRKGMSIRFAADDDSIRPLGRVTGGVTGMKFK-GD 711

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    I             Y +        L  RGG+G  V K   + G  + 
Sbjct: 712 DELLTMDVIQPDTFVFVVTEGGYAKRTPVDEYRLQGRGGLGIRVAKITEQRGDLVG 767


>gi|153827235|ref|ZP_01979902.1| topoisomerase IV, subunit A [Vibrio cholerae MZO-2]
 gi|149738849|gb|EDM53185.1| topoisomerase IV, subunit A [Vibrio cholerae MZO-2]
          Length = 761

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 283/751 (37%), Positives = 445/751 (59%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 LQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L + +L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHSLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGSSITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|149185900|ref|ZP_01864215.1| DNA topoisomerase IV subunit A [Erythrobacter sp. SD-21]
 gi|148830461|gb|EDL48897.1| DNA topoisomerase IV subunit A [Erythrobacter sp. SD-21]
          Length = 765

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 367/765 (47%), Positives = 514/765 (67%), Gaps = 16/765 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   ++ +S     + +       AL ERYL YALSTI  R++PDLRDG KPVHRR++  
Sbjct: 1   MATTDLDDSGADPFDAIVDAPFDSALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWT 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ LD  + FKKSAR+VGEVIGK HPHGD + YD++VRLAQ F  RYPL+ GQGNFGN
Sbjct: 61  MRQLKLDPASGFKKSARVVGEVIGKYHPHGDTAAYDAMVRLAQDFALRYPLVEGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAAYRYTEAR+T+ A  +++G+D   VDF  TYN E+ EP + P  FPNLLANG 
Sbjct: 121 IDGDNAAAYRYTEARLTKTAMRLMEGLDAGTVDFIPTYNNEEEEPEIMPGLFPNLLANGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IPSHNV EI +A L +IDNP +   +L+E   GPDF TGG++ ES E+I 
Sbjct: 181 SGIAVGMATNIPSHNVAEIVDATLEVIDNPHVEHARLMEIFKGPDFATGGVVPESTETIS 240

Query: 241 ESYRLGRGGFRVRARWC-------------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            +Y  GRG FRVR R+              +E +G G W +V++EIPYQV K +LIE+IA
Sbjct: 241 HAYETGRGSFRVRGRFHAAEAEKEEDKQAGIERLGGGQWQLVISEIPYQVAKGKLIEQIA 300

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
             I  +++P+LED+RDES E +RIVL P++R++DP+LL ESI+ L+DMETRF LN+NVL 
Sbjct: 301 AAIADRKLPILEDVRDESDEQIRIVLVPRSRNVDPELLKESIYKLTDMETRFGLNLNVLD 360

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
             R P VM L  +L+ W+A + ++L RRS  R+  I RR+E++ G +IA+LN+D +I II
Sbjct: 361 RTRTPMVMGLKELLENWIASQIDILQRRSQHRLDQIARRLELVDGYIIAFLNLDRVIEII 420

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R ED+PKPVM+  F LT+ Q +AILN+RLRSLRKLEE Q++ E D LL E+++++ LL S
Sbjct: 421 RTEDEPKPVMMDEFKLTDRQAEAILNMRLRSLRKLEEMQLRGEKDELLKEQDELEKLLGS 480

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +Q  ++  ++  +++ +S+ T LG RRTT  E + A       AMIEKEP+TV++S +
Sbjct: 481 PARQRTRLKRDLGALRKEYSEDTALGARRTTIEEAAPA-VEFSMDAMIEKEPVTVILSQK 539

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           GWIR  K H        +KEGD+    LHA TTD++LL+  DG+ +TL A  L   RG G
Sbjct: 540 GWIRGAKGHLPLDQEFKYKEGDAPAFVLHAQTTDKLLLIGNDGRVFTLGADKLPGARGFG 599

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           E ++  +D++     V+  V+    ++L+ +S G  F V    ++A TRKG+  + V   
Sbjct: 600 EPVRNTLDIDGQAQFVSVVVHSEGQEVLLAASNGKGFAVGTDAMLAETRKGRQVMNVKGN 659

Query: 648 EKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI 705
            K+ +   +    DHVAVVG+NRKL++F+++++P +++G+G +LQ+Y+DGG+SD   F +
Sbjct: 660 VKLVVARPIAKAHDHVAVVGDNRKLVVFNLEELPRLAKGQGNKLQNYRDGGLSDATTFTM 719

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +GL+W         R+E ++  W   RGG G L P+GFPR  KF
Sbjct: 720 EDGLSWTMGGKEGRTRTEPEMWQWKVARGGAGRLPPQGFPRDNKF 764


>gi|256831261|ref|YP_003159988.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603]
 gi|256684792|gb|ACV07685.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603]
          Length = 871

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 242/783 (30%), Positives = 394/783 (50%), Gaps = 42/783 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   N ++ + +V  N++ V L+  ++  YL YA+S I  RA+P++RDG KPVHRR+I+A
Sbjct: 7   MAQGNAADVSGVVHGNIEQVDLQTEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVIYA 66

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     A+ K +R+VG+V+GK HPHGD ++YD+LVRL Q +  RYPL +GQGNFG+
Sbjct: 67  MYDGGYRPDRAYSKCSRVVGDVMGKYHPHGDTAIYDTLVRLVQDWTLRYPLAAGQGNFGS 126

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA RYTE RM Q+A  +++ +D++ VDF+D Y+    EP V P++FPNLL NG+
Sbjct: 127 PGNDPAAAPRYTETRMAQIAMEMVRDIDKNTVDFQDNYDGRTQEPAVLPARFPNLLVNGS 186

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESR 236
           +GIAVGMAT+IP HN++E+ E     + NP+ S E+L E     I GPDFPTG  I+  R
Sbjct: 187 AGIAVGMATNIPPHNLREVAEGVAWYLANPDASREELREALIARIKGPDFPTGATIL-GR 245

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I ++YR GRG   +RA   VEE+ +G  C+VVTE+PYQV    L  KIA+L    RI 
Sbjct: 246 SGIDDAYRTGRGSITMRAVVNVEEI-QGRQCLVVTELPYQVNPDNLALKIADLTKEGRIQ 304

Query: 297 LLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + DIRDE++    + ++    R     +++ +++  + ++  F  NM  L    VP+ +
Sbjct: 305 GIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFSANMLALVD-GVPRTL 363

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            +D  +  W+ H+ +V+ RR++F ++  + ++ IL+G L A  N+DE+IA+IR     + 
Sbjct: 364 SIDAFIHHWVNHQLDVISRRTAFLLKEAEDKIHILRGYLRALDNLDEVIALIRRSPTVEE 423

Query: 416 VM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                +    + + Q  AILNL+LR L  LE  +I  E D+L  +      +L S ++Q 
Sbjct: 424 ARGGLIELLGIDDIQATAILNLQLRRLAALERQKIIDEHDDLERQILDYRDILASPQRQR 483

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
           + +  E+ E+ + +        RR+T             + +I +E + V I+  G+++ 
Sbjct: 484 DIVGSELSEIVDRYGDE-----RRSTILPYGGE---VSMEDLIAEEDVVVTITRGGYVKR 535

Query: 533 --------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
                    K     +     +E D +       T   +L  +  G+ Y   A  L  G 
Sbjct: 536 TRSDNYRAQKRGGKGVRGTQLREDDIVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGS 595

Query: 585 GHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
              +   +  L+     + I        Y+    L++ +  G       SE   N   G 
Sbjct: 596 RESKGQHVANLLAFQPGESIAQVLALRNYEDHEYLVLATRSGLVKKTRLSEYDTNRSAGL 655

Query: 640 TFLKVSSE-----EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQ 690
             +K+        +++   + V  D  + ++    + + F+ D   +  M RG  GV   
Sbjct: 656 IAIKLREYDDGSVDELVKAMPVNADNDLILISRLGQSIRFTADDASLRPMGRGTSGVIGM 715

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            + DG    +    + +           + +        +  RGG G  V K     G  
Sbjct: 716 KFADGDEL-LSADVVKDDADLFVVTDGGFAKRTAISEYRVQGRGGQGVKVAKLVEDRGHL 774

Query: 751 LSS 753
           + +
Sbjct: 775 VGA 777


>gi|229527036|ref|ZP_04416431.1| topoisomerase IV subunit A [Vibrio cholerae 12129(1)]
 gi|229335433|gb|EEO00915.1| topoisomerase IV subunit A [Vibrio cholerae 12129(1)]
          Length = 761

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 283/751 (37%), Positives = 444/751 (59%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 LQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|325972865|ref|YP_004249056.1| DNA gyrase subunit alpha [Spirochaeta sp. Buddy]
 gi|324028103|gb|ADY14862.1| DNA gyrase, A subunit [Spirochaeta sp. Buddy]
          Length = 855

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 245/761 (32%), Positives = 394/761 (51%), Gaps = 26/761 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             + E    +V +   +   YL YA+S I  RA+PD+RDG KPVHRRI+  M EMGL   
Sbjct: 2   EEVNESRTISVDVSNEMRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILFDMFEMGLRAN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            +FKK ARIVG+V+GK HPHGD SVYD+LVRLAQ F  RYP+++ QGNFG+IDGD AAA 
Sbjct: 62  TSFKKCARIVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVNPQGNFGSIDGDPAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+M+++ E +LQ + ++ V+F   Y++   EP V P+ FP LLANG+SGIAVGMAT
Sbjct: 122 RYTEAKMSRIGEEMLQDIQKETVNFGPNYDDSMQEPTVLPASFPFLLANGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           ++  HN+QEIC+A  A+IDNP+I+I++L+E+I GPDFP+GG I+   + I +++  GRG 
Sbjct: 182 NMAPHNLQEICDAISAVIDNPDITIDELMEHIKGPDFPSGG-IICGLQGIKDAFMTGRGK 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VR+ + +E   R    IV TEIPYQV K+ L++KI +L     IP++  +RDES    
Sbjct: 241 IVVRSVYEIETSERDHDQIVFTEIPYQVNKADLVKKIDDLRKDGAIPMISVVRDESDRKG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++       +P +++  +F  + +++ F +N   L     PQ++ L  +L  ++ HR 
Sbjct: 301 IRIVVELKVGAEPMVVLNQLFARTALQSNFNVNNLALV-QGRPQMLTLKDMLVYYIRHRE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ F ++    R  IL+GL I   NIDE+I II++          +VSRF L + 
Sbjct: 360 EVVTRRTQFDLRKAQERAHILRGLKIGLDNIDEVIQIIKDSADNAIAADRLVSRFGLDQI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI++++L  L  LE  +I  EL +L  +      +L+   +    +     EV+ + 
Sbjct: 420 QAQAIIDMKLGRLSHLETSKILEELADLEQKIAYYQEVLSDEGKILKLVQS---EVRALP 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           S      RR T              +  I+ E + V+ISN+G+ + +++           
Sbjct: 477 SSLVPKDRRLTKIAREELGQSTL--EDFIKDEQVVVLISNKGFAKRIRAEEYEAHGRAGK 534

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
                  ++GD +     A T + ++ ++  GKAY      +       +  +I+ ++ L
Sbjct: 535 GTRTTKLQDGDFVNHMFVAFTHEYVMFVTNAGKAYYTKVFEIPEASKTAKGTSIKNILQL 594

Query: 597 NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I +   +        L++ +  G    V  +  +    +G   L +   +++   
Sbjct: 595 ETTEKITSIISFKEFSEDHYLMMATRDGVVKKVSLNNFVNAKVRGIRALFLDEGDELLSC 654

Query: 654 VKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTW 711
             +  GD V ++ +  + L F  D +  M R  +GVR               K+      
Sbjct: 655 DLIQEGDEVMLITKLGRGLRFRQDNVRAMGRASRGVRGIRLLANDQV-AGLLKVDSTKRI 713

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        +  N     +  RG  G  + +   ++   + 
Sbjct: 714 LMITENGQGKQVNFDSFTVHGRGTQGQKIYRLGGKASFIVG 754


>gi|308189875|ref|YP_003922806.1| DNA gyrase subunit A [Mycoplasma fermentans JER]
 gi|319777071|ref|YP_004136722.1| DNA gyrase subunit a [Mycoplasma fermentans M64]
 gi|307624617|gb|ADN68922.1| DNA gyrase subunit A [Mycoplasma fermentans JER]
 gi|318038146|gb|ADV34345.1| DNA gyrase subunit A [Mycoplasma fermentans M64]
          Length = 926

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 399/753 (52%), Gaps = 31/753 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              ++ +  V +   ++  +L YA+S I  RA+PD RDG KPVHRRI+  M+E+G+ FG+
Sbjct: 75  DAPKDGIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGS 134

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             +KSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPL+ G GNFG+IDGD AAA R
Sbjct: 135 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMR 194

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +L+G+ +D VDF D Y+  + EP V PS+FPNLL +G SGIAVGMATS
Sbjct: 195 YTEARMSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATS 254

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A +AL +NPEI I  L+E++ GPDFPTG +I+     I ++Y  G+G  
Sbjct: 255 IPPHNLGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMIL-GNAGIKDAYLTGKGSI 313

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R+   +EE   G   I+VTEIPY+V+K+ +IEKIAEL+  K+I  + D+RDES+ +  
Sbjct: 314 PIRSIAKIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGI 373

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    ++++P +L+  ++  ++++  + +N   L     P+V+ L   L+ +L H+ E
Sbjct: 374 RIVIDVKKNVNPHVLLNKLYRQTNLQVNYNVNFVALVD-GEPKVLNLKQALEVYLRHQEE 432

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQ 427
           V+ RR  F +     R+ IL+GL IA  NIDE+IAII+          +   RF+LTE Q
Sbjct: 433 VVTRRLKFDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKRFNLTEKQ 492

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+++RL  L  L    +  E+  L  E E+I+ +L +  +    I  E+ E+KE ++
Sbjct: 493 TKAIVDMRLGRLTGLAIENMLEEMAELRKEIERIEFILANHSELIKLIVKELTEIKEKYN 552

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                 +RRT              + +I +  I +  S +G+++ +        +   V 
Sbjct: 553 D-----KRRTQI--NYEIQGTITDEDLIPQRDIVITTSAKGFVKRMDLEEYKTQRRGGVG 605

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-----AIQLLI 594
           +  +   + D +   L   T   +LL S   + Y + A  +       +      I   +
Sbjct: 606 IGTMKTYDDDDIASILTTTTHTDLLLFSNHARVYRVRAHEIPELSRQSKGVAFINIIPSL 665

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + IV+      YD    L   +  G       +E       GK    +   +++ 
Sbjct: 666 RVKEGERIVSMLPVDTYDEDHYLFTATKNGIIKKTRLTEYERINANGKYAFNLREGDELI 725

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             + +T +  + +  +  +++ F       +SR   GV+  +               EG 
Sbjct: 726 RAMIITDEDLILLANDEERIVKFQAIDFRPISRTATGVKGITLDSHQTVSSTS-TSQEGE 784

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +    + + +  +  L  L KRGG G     
Sbjct: 785 LILTIGKKGFGKLTHHSLFRLIKRGGKGVKGIN 817



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 6/226 (2%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
            +   +       +   D       +       ++          + ++    A + +EG
Sbjct: 663 PSLRVKEGERIVSMLPVDTYDEDHYLFTATKNGIIK-KTRLTEYERINANGKYAFNLREG 721

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L  A+     D ILL + + +     A +          +   I L+ +Q + +    
Sbjct: 722 DELIRAMIITDEDLILLANDEERIVKFQAIDFRPISRTATGV-KGITLDSHQTVSSTSTS 780

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVT-GDHVAVVG 665
                +L +  KG   +   S      R GK    +       +     V   D + ++ 
Sbjct: 781 QEGELILTIGKKGFGKLTHHSLFRLIKRGGKGVKGINSKLAGDIVFARFVNPQDELLIIT 840

Query: 666 ENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT 710
            +   +  +I QI +  R  KGV++ + K       +     +  T
Sbjct: 841 TSGLTIRTAISQISQTGRAAKGVKIINLKKREEIQAVEIIKIDEKT 886



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 17/41 (41%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           I +    I ++ + + +  +       +RGGVG    K + 
Sbjct: 573 IPQRDIVITTSAKGFVKRMDLEEYKTQRRGGVGIGTMKTYD 613


>gi|157363212|ref|YP_001469979.1| DNA gyrase, A subunit [Thermotoga lettingae TMO]
 gi|157313816|gb|ABV32915.1| DNA gyrase, A subunit [Thermotoga lettingae TMO]
          Length = 808

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 237/754 (31%), Positives = 393/754 (52%), Gaps = 26/754 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            + + ++   L E Y+ Y++S I  RAIPD+RDG KPV RRI++AM E+GL   A  KK 
Sbjct: 3   EILSKNIEDELVELYMNYSMSVIIGRAIPDVRDGLKPVQRRILYAMHELGLTHNAQSKKC 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD SVYD+LVRLAQPF  RYPL+ GQGNFG+ID D  AA RYTEA+
Sbjct: 63  ARIVGEVLGKYHPHGDASVYDALVRLAQPFSVRYPLVIGQGNFGSIDRDPPAAMRYTEAK 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++AE +LQ +D++ V     +++   EP V PSK PNLL NG +GIAVGMATSIP HN
Sbjct: 123 LSELAEEMLQDLDKETVTMTKNFDDSLDEPEVLPSKVPNLLINGANGIAVGMATSIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           +QE+  A   LI+NPE +I  LL  I GPDFPTG +IV     + E Y  G+G   +R +
Sbjct: 183 LQEVVNAIEMLIENPEATIADLLRIIKGPDFPTGALIVNG-NELTEVYATGKGRIVLRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              EE  R    +V+TEIPY V K+ LIE+IA         ++++IRDES ++   ++  
Sbjct: 242 VHFEEGKR-FNNVVITEIPYNVSKAALIEEIASYAEKNPKMMIKNIRDESDKNGLRIVVE 300

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             ++ + ++++ +++  + ++T F +   ++  GR P++M L  +LK ++ HR +V+ +R
Sbjct: 301 IPKNANAEIILNNLYKHTSLQTSFSVQ-MLVIDGRRPKLMNLSQLLKAFIKHRFDVIRKR 359

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAIL 432
           + + ++   RR  IL+G++ A   I  ++ I+R     +  M +      +T  Q  AIL
Sbjct: 360 AEYELKVYSRRAHILEGIMKAARAIGVVVDIVRTSKDSEEAMKNLIEALSITNEQAKAIL 419

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  +++ E   L+ + E +  +L+  ++ +N +  E+ E+K+ ++     
Sbjct: 420 DMRLGRLTGLEIEKLQGEYSQLIKKIEDVKDILSRDERVYNVMYQELEELKKKYADE--- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALH 544
              R T  E      +   + +I  E + + ++ +G+         RS +     +    
Sbjct: 477 ---RRTKIENITDSLSYTPEDLIPNEDVVITLTEKGYLKSTSLKDYRSQRRGGKGIVGAR 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D +     +    + L +++ GKAY L    +        G+ I+  ++L  ++ +
Sbjct: 534 TAEDDEILTVCTSKMHSQTLFVTSAGKAYILKNYEIELTGRDTKGKPIRAYLNLEEDESV 593

Query: 603 VTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK--VTGD 659
           +T   +D     L++V+  G        E    T +G   +  S  + +          D
Sbjct: 594 LTMISFDEWKGDLVLVTKSGRIKRTPLKEFENTTSRGIRAITFSDSDVVVSATLSSSESD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +  +N   + F +  + +M R   GV     ++      +     E    +    R 
Sbjct: 654 QIIIATKNGMAIRFPLKDVRQMGRSAMGVIGIRLREKDEVVGMVNVPDENCEILTITVRG 713

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + +        +  RGGVG     G  ++G+   
Sbjct: 714 FGKRTPVNDYRVQSRGGVGIKTMPGVEKAGQLCG 747



 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 58/147 (39%), Gaps = 6/147 (4%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
            +D+I++ + +G A   P  ++         +  +     ++ +    V D  C++L ++
Sbjct: 651 ESDQIIIATKNGMAIRFPLKDVRQMGRSAMGVIGIRLREKDEVVGMVNVPDENCEILTIT 710

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-----KLVVKVTGDHVAVVGENRKLLIF 673
            +G       ++    +R G     +   EK        +V      V V+ +N + + F
Sbjct: 711 VRGFGKRTPVNDYRVQSRGGVGIKTMPGVEKAGQLCGIDIVADPKSDVIVMTKNGQSIRF 770

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISD 699
           ++  + ++SR  +GV++          
Sbjct: 771 NLSTVSQLSRTARGVKIVDLSGDDEVS 797


>gi|329850741|ref|ZP_08265586.1| DNA topoisomerase IV, A subunit [Asticcacaulis biprosthecum C19]
 gi|328841056|gb|EGF90627.1| DNA topoisomerase IV, A subunit [Asticcacaulis biprosthecum C19]
          Length = 733

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 367/731 (50%), Positives = 508/731 (69%), Gaps = 8/731 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L  AL +RYLAYALSTI  RA+PD+RDG KPVHRR+++AMS M L+  AA +K 
Sbjct: 8   RIVDEPLGDALSKRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAMSNMRLNPEAAARKC 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VGEV+G  HPHGDQ++YD+LVR+AQ F QRY L+ GQGNFGNIDGD+AAA RYTE R
Sbjct: 68  AKVVGEVMGNFHPHGDQAIYDALVRMAQNFAQRYELVQGQGNFGNIDGDNAAAMRYTECR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T  A +IL G++EDAVDFR TY+++D+EPVV P  FPNLLANG  GIAVGMATS+P HN
Sbjct: 128 LTLAAMMILDGINEDAVDFRPTYDDQDTEPVVLPGGFPNLLANGAIGIAVGMATSVPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           V E+ +A   L+ N   +  +L+E+I GPDFPTGG+ VESR+SI E+Y  GRG  RVRAR
Sbjct: 188 VVELVDACRKLLQNHAATTAELMEFIPGPDFPTGGVCVESRKSIQEAYETGRGSVRVRAR 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           + VE+ GRG W I+V EIPYQVQKSRLIE++A+LI AK+ PLL D+RDES E++R+VL P
Sbjct: 248 YEVEDAGRGQWRIIVREIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESDENIRLVLEP 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R+++P++LMES+F +SD+ETRFP+NMNVL     P+VM L   L  WL HRR VL R 
Sbjct: 308 KSRNIEPEVLMESLFKISDLETRFPINMNVLDATGTPRVMGLRACLIAWLDHRRVVLLRM 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S++R++ I++R+ +L GL+IA+LN+DE+I I+R EDKP+ +++SRF+L+E Q D IL+ R
Sbjct: 368 SNWRLEKIEKRLHLLDGLMIAFLNLDEVIRIVREEDKPRDMLMSRFTLSELQADYILDTR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L +LEE  I+ E   L  E+E I +LL S K QW +I   + EV++          R
Sbjct: 428 LRQLARLEEMVIQDEHKKLSEEREGILALLGSEKMQWKRIDQLLVEVRKKLPSP-----R 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RTT+ +     +    ++ + KE ITV++S RGWIR+ K    D S L FKEGD L   +
Sbjct: 483 RTTYADAPVGIEVAAIESYLPKEAITVILSKRGWIRAAKGKVEDPSELKFKEGDELSFLV 542

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
             + TD+ L+L+TDG+  TL    L S RGHGE ++L++D+  +  IVT F Y +  K +
Sbjct: 543 PGYNTDKFLILTTDGRFLTLSGDKLPSARGHGEPLRLMLDIEESAKIVTVFAYTAGAKRV 602

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           +V+  G  F++ E + +AN R GK  + V    +    ++VTGD + V+GEN K+L++ +
Sbjct: 603 MVAKNGYGFVMNEEDAVANKRAGKQTMTV-DGTEAMAALQVTGDLICVLGENNKVLVYPV 661

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            ++PEM+RGKGV+LQ+YKDGG+ D+  +       W D  G    R   D+  ++G+R  
Sbjct: 662 TELPEMARGKGVKLQAYKDGGVKDITVYDSNGSPQWFD--GAGKARDFKDIKDYIGRRAT 719

Query: 736 VGSLVPKGFPR 746
            G + P+G  +
Sbjct: 720 AGKMAPRGLRK 730


>gi|227082551|ref|YP_002811102.1| topoisomerase IV, subunit A [Vibrio cholerae M66-2]
 gi|227010439|gb|ACP06651.1| topoisomerase IV, subunit A [Vibrio cholerae M66-2]
          Length = 761

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 283/751 (37%), Positives = 445/751 (59%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H+VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHNVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|229524415|ref|ZP_04413820.1| topoisomerase IV subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229337996|gb|EEO03013.1| topoisomerase IV subunit A [Vibrio cholerae bv. albensis VL426]
          Length = 761

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 282/751 (37%), Positives = 444/751 (59%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ +L+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|293363502|ref|ZP_06610258.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2]
 gi|292552851|gb|EFF41605.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2]
          Length = 894

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 399/760 (52%), Gaps = 32/760 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             +  + +   ++  +L YA+S I  RA+PD RDG KPVHRRI++ M E+G+   +  +K
Sbjct: 69  NGLSPIKVDSEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILYDMLELGITHSSQHRK 128

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVY+++VRLAQ F  RYPL+ G GNFG+IDGD AAA RYTEA
Sbjct: 129 SARIVGDVLGKYHPHGDSSVYEAMVRLAQDFSMRYPLVDGHGNFGSIDGDQAAAMRYTEA 188

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L G+ +D V+F D Y+  + EPVV PS+FPN+L +G +GIAVGMAT IP H
Sbjct: 189 RMSKLAAEMLDGIKKDTVNFVDNYDASELEPVVLPSRFPNILVSGATGIAVGMATEIPPH 248

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +A   NPEI+ ++L+E+I GPDFPTG  I+   + I ++Y  G+G   +R+
Sbjct: 249 NLTETINATIAFARNPEITTKELMEHIKGPDFPTGATIL-GVKGIYDAYETGKGKIPLRS 307

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   I++TEIPY V+K+ +IEKI EL   K +  + ++RDES  +   ++ 
Sbjct: 308 QAKIEEFANGKSRIIITEIPYAVKKTTIIEKIVELHKDKTVEGIGELRDESNREGIRIVI 367

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +  +L+  ++  S ++T    N+  L     P+++ L  IL  +L H+ EV+ R
Sbjct: 368 DVKKGYNAHILLNKLYQKSYLQTNVNANLVALVH-GEPKLLNLKQILSIYLDHQIEVVTR 426

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R  F ++    ++ IL GL IA  NIDE++ II+        +  +  RF+L++ Q  AI
Sbjct: 427 RLKFDLEKAQDKLHILDGLKIAVSNIDEVVQIIKTSANDAIAQERLAKRFNLSDRQTKAI 486

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++ LR L  L   ++  E+D L  E   +  +L S +   N I  E+ E+++ F     
Sbjct: 487 LDMNLRRLTGLNIEKMNLEIDELNKEISYLKGILESREALINLIIDELSEIRDRFGDE-- 544

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RRT   E + +  +   + +I    I +  S +G+++ +K             +S +
Sbjct: 545 ---RRTQIDEFTVS--SISDEDLIPVNNIVITTSVKGYVKRMKLEDYNMQNRGGIGVSTM 599

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-----H 598
              + D +   L   T   ++L +  G+ Y + A  +  G    +    +  +       
Sbjct: 600 KTYDDDDISKILQTTTHTDLMLFTNLGRVYRIRAHQVPEGSKQSKGTPFINIIPSLNEKE 659

Query: 599 NQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + +V+    D       L+ ++ KG       SE  +    GK   ++  ++ +     
Sbjct: 660 GEKVVSLLSVDEYNDDHFLVTITEKGVIKKTALSEYESIRSNGKNAFRLKEDDHLVNAFI 719

Query: 656 VTGDHVAVVGENRK-LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
           VT ++  ++  N K ++ FS   +  +SR  +GVR     +          + +G   + 
Sbjct: 720 VTDENEILIASNGKNVVKFSSLDLRPLSRNSQGVRGIRLDENKKVIAASSDL-DGEFILS 778

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + + +  +     L KRGG G        ++G  + +
Sbjct: 779 IGTKGFGKLTHSDEFRLIKRGGKGVTAINA-DKAGDLIFA 817



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 4/120 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMK 651
           I L+ N+ ++ A        +L + +KG   +    E     R GK  T +       + 
Sbjct: 756 IRLDENKKVIAASSDLDGEFILSIGTKGFGKLTHSDEFRLIKRGGKGVTAINADKAGDLI 815

Query: 652 LVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
               V   D   ++  +   +  SI Q+   SR  KGV++ + ++      +     E  
Sbjct: 816 FAKFVNKNDEALIITSSGTTIRISISQLSVTSRATKGVKIINLRENDEIIAVEIVKTEEE 875



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 3/154 (1%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + +I      VV  +   +R L  +S  +  +   E   +  A      + IL + T G
Sbjct: 724 NEILIASNGKNVVKFSSLDLRPLSRNSQGVRGIRLDENKKVIAASSDLDGEFILSIGTKG 783

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 +      +  G+ +  +        I   FV  +   L++ +S G    +  S+
Sbjct: 784 FGKLTHSDEFRLIKRGGKGVTAINADKAGDLIFAKFVNKNDEALII-TSSGTTIRISISQ 842

Query: 631 IIANTR--KGKTFLKVSSEEKMKLVVKVTGDHVA 662
           +   +R  KG   + +   +++  V  V  +   
Sbjct: 843 LSVTSRATKGVKIINLRENDEIIAVEIVKTEEEM 876


>gi|15642427|ref|NP_232060.1| DNA topoisomerase IV subunit A [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|147674657|ref|YP_001217931.1| DNA topoisomerase IV subunit A [Vibrio cholerae O395]
 gi|153823960|ref|ZP_01976627.1| topoisomerase IV, subunit A [Vibrio cholerae B33]
 gi|229507510|ref|ZP_04397015.1| topoisomerase IV subunit A [Vibrio cholerae BX 330286]
 gi|229512294|ref|ZP_04401773.1| topoisomerase IV subunit A [Vibrio cholerae B33]
 gi|229519431|ref|ZP_04408874.1| topoisomerase IV subunit A [Vibrio cholerae RC9]
 gi|229607016|ref|YP_002877664.1| DNA topoisomerase IV subunit A [Vibrio cholerae MJ-1236]
 gi|254849554|ref|ZP_05238904.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|255746898|ref|ZP_05420843.1| topoisomerase IV subunit A [Vibrio cholera CIRS 101]
 gi|262168410|ref|ZP_06036107.1| topoisomerase IV subunit A [Vibrio cholerae RC27]
 gi|297581054|ref|ZP_06942979.1| topoisomerase IV [Vibrio cholerae RC385]
 gi|9657005|gb|AAF95573.1| topoisomerase IV, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126518519|gb|EAZ75742.1| topoisomerase IV, subunit A [Vibrio cholerae B33]
 gi|146316540|gb|ABQ21079.1| topoisomerase IV, subunit A [Vibrio cholerae O395]
 gi|227014322|gb|ACP10532.1| topoisomerase IV, subunit A [Vibrio cholerae O395]
 gi|229344120|gb|EEO09095.1| topoisomerase IV subunit A [Vibrio cholerae RC9]
 gi|229352259|gb|EEO17200.1| topoisomerase IV subunit A [Vibrio cholerae B33]
 gi|229355015|gb|EEO19936.1| topoisomerase IV subunit A [Vibrio cholerae BX 330286]
 gi|229369671|gb|ACQ60094.1| topoisomerase IV subunit A [Vibrio cholerae MJ-1236]
 gi|254845259|gb|EET23673.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|255735300|gb|EET90700.1| topoisomerase IV subunit A [Vibrio cholera CIRS 101]
 gi|262023302|gb|EEY42006.1| topoisomerase IV subunit A [Vibrio cholerae RC27]
 gi|297534880|gb|EFH73716.1| topoisomerase IV [Vibrio cholerae RC385]
          Length = 761

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 283/751 (37%), Positives = 444/751 (59%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|239930169|ref|ZP_04687122.1| DNA gyrase subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291438511|ref|ZP_06577901.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672]
 gi|291341406|gb|EFE68362.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672]
          Length = 864

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 235/778 (30%), Positives = 387/778 (49%), Gaps = 29/778 (3%)

Query: 1   MGVDNISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  +N   +     +    V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+
Sbjct: 1   MTDENTPVTPEEGGDVAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWAMRMPLVDSNGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+   D AAA RYTE +M  ++  +++ +DE+ VDF+D Y+    EP V P++FPNLL 
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFKDNYDGRSQEPTVLPARFPNLLI 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIV 233
           NG++GIAVGMAT+IP H ++E+   A   ++NPE S E+    L+E I GPDFPTG  +V
Sbjct: 181 NGSAGIAVGMATNIPPHTLREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGA-LV 239

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   
Sbjct: 240 VGRKGIEEAYRTGRGSITMRAVVAVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDG 298

Query: 294 RIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           ++  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L    VP
Sbjct: 299 KVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GVP 357

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           + + LD  ++ W+AH+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D 
Sbjct: 358 RTLSLDAFIRHWVAHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDT 417

Query: 413 PKPVMVSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
            +           + + Q +AIL ++LR L  LE  +I  E D L A+ ++ + +L S  
Sbjct: 418 VEIARGGLRDLLAIDDIQANAILEMQLRRLAALERQKIVQEHDELQAKIDEYNGILASPV 477

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +Q   ++ E+  + E +                     A     +       +  +    
Sbjct: 478 RQRGIVSEELAALVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKRTRTED 537

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
            R+ K     +     KE D +     + T   +L  +  G+ Y   A  L        G
Sbjct: 538 YRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPEAGRDARG 597

Query: 588 EAIQLLIDLNHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L+    ++ I        Y++   L++ +  G        +  +    G   + +
Sbjct: 598 QHVANLLAFQPDETIAQIRAIRDYEAVPYLVLATKSGLVKKTPLKDYDSPRSGGVIAINL 657

Query: 645 SS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
                  ++++     V+  D + ++ +  + + F+     +  M R   GV+  S+++G
Sbjct: 658 REREDGTDDELIGAELVSADDDLLLISKKAQSIRFTATDDTLRPMGRATSGVKGMSFREG 717

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +   +  G     +    Y +        +  RGG+G    K     G  + +
Sbjct: 718 DELLSMNV-VRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 774


>gi|72382528|ref|YP_291883.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A]
 gi|72002378|gb|AAZ58180.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A]
          Length = 872

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 237/793 (29%), Positives = 391/793 (49%), Gaps = 58/793 (7%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S      ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL
Sbjct: 9   STGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRILYAMYELGL 68

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  + PLI G GNFG++D D  
Sbjct: 69  TSDRPYRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPP 128

Query: 127 AAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AA RYTE+R+  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG+SGIAV
Sbjct: 129 AAMRYTESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLLNGSSGIAV 188

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALI NPE+    L+  I GPDFPTGG I+  R  I E+Y  
Sbjct: 189 GMATNIPPHNLVELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQIL-GRSGIKETYLS 247

Query: 246 GRGGFRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           GRG   +R    +E +          +++TE+PYQ  K+ LIE+IA+++  K++  + DI
Sbjct: 248 GRGSITMRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKKLEGIADI 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   ++    R   P +++ ++F L+ ++T F  NM  L     P ++ L  +L
Sbjct: 308 RDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALV-NGEPVILSLRKML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVMV 418
           + +L  R E + +R+ + ++  + R  IL GLL+A   +DEI   I    +    K  + 
Sbjct: 367 QVFLDFRVETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTTAKNKLQ 426

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               LT+ Q DAIL ++LR L  LE  +I+ E ++L+ +   +  +LN  ++ +     E
Sbjct: 427 ELHGLTDIQSDAILQMQLRRLTALEADKIRLEHEDLVKKITDLKDILNKKERVFEITKIE 486

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+KE ++      +RRT   ++    +      +I  E   V+++  G+++ +  +  
Sbjct: 487 LNEIKEKYNT-----QRRTEILDLGGGLEDI---DLIANERSVVLLTETGYLKRMPVNEF 538

Query: 539 --------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
                     +    +  + +K  +  +  D +LL S  G +Y LPA  +       +  
Sbjct: 539 EATSRGTRGKAGTRSQGEEEVKKFISCNDHDSLLLFSDRGISYALPAYRVPQCSRTAKGT 598

Query: 589 AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            I  L+ +   + I +      +D    LL+++  G       S        G   + + 
Sbjct: 599 PIVQLLPIPREEAITSLLSVSSFDDENYLLMLTRGGYIKRTPLSAFSKIRANGLIAIGLE 658

Query: 646 SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGGISDVI 701
             + +  V     GD V +  +N   + F +   ++  + R  +GV+  + K G     +
Sbjct: 659 DGDALTWVRLAESGDSVLIGSKNGMTIHFRLNDSELRPLGRSARGVKSMNLKSGDSLVSM 718

Query: 702 CFKICE---------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                E                     G   + ++     +        L KR G+G   
Sbjct: 719 DVLSTELADHVDKSEEDELHSESSESEGPWVLVASASGLGKRVPMTQFRLQKRAGMGLRA 778

Query: 741 PKGFPRSGK-FLS 752
            K F + G   + 
Sbjct: 779 IK-FRKDGDELVG 790



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKV-SSEEKMKLVVKV-TGDHVAVVGENRK 669
           +LV S+ G    V  ++     R G     +K     +++  +  +  G+ + +V E   
Sbjct: 749 VLVASASGLGKRVPMTQFRLQKRAGMGLRAIKFRKDGDELVGLRVLGKGEELLLVSERGV 808

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
           ++  S D+I + SR   GVR+Q   +G     +     E +
Sbjct: 809 IVRTSADKISQQSRAATGVRIQKLDNGDKLSEVVLVPPEQI 849



 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 2/103 (1%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L+ S  G    +P       +  G  ++ +       ++V   V     +LL+VS +
Sbjct: 747 PWVLVASASGLGKRVPMTQFRLQKRAGMGLRAIKFRKDGDELVGLRVLGKGEELLLVSER 806

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
           G        +I   +R   G    K+ + +K+  VV V  + +
Sbjct: 807 GVIVRTSADKISQQSRAATGVRIQKLDNGDKLSEVVLVPPEQI 849


>gi|291457884|ref|ZP_06597274.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419428|gb|EFE93147.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 827

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 220/757 (29%), Positives = 383/757 (50%), Gaps = 27/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L+  +E  Y+ YA+S I  RAIPD+RDG KPV RR+++++  +G+      KK
Sbjct: 7   DKVQDVDLKKTMENSYIDYAMSVIVSRAIPDVRDGLKPVQRRVLYSLQSLGVTPDKKTKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A IVGE +GK HPHGD S+Y +LV + QP+  R+ LI  QGNFG+ DGDS AA RYTEA
Sbjct: 67  CATIVGETMGKYHPHGDSSIYGALVYMGQPWSMRHVLIDKQGNFGSEDGDSPAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M+++A  +L G+++D VDF   ++ E  EP V P++FPNLL NG +GIAVGMAT+IP H
Sbjct: 127 KMSRIAAEMLFGINKDTVDFMPNFSNEYEEPTVLPARFPNLLVNGATGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A   +I +     E  ++++++ I GPDFPTG  ++  R  I E+YR GRG  
Sbjct: 187 NLREVIDALDLIISDRIEGRETELDEIIKKIKGPDFPTGA-LILGRRGIEEAYRSGRGKI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RA   +E +  G   I+V E+PY V +SR+IEK+AEL+  K+I  +  I D + +   
Sbjct: 246 KMRAVCEIEPMQSGKHRILVKELPYLVCRSRIIEKVAELVKDKKIDGITFINDAAGKGSS 305

Query: 311 -IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     +  +P++++  ++  + ++  F + M  +     P+++ L  +L E+L H+ 
Sbjct: 306 AKINIELRKDANPNVILNQLYKHTQLQDTFGVIMLCIV-NGEPRILNLQEMLNEFLKHQI 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
            V+ RR+ + +   + R  IL+GLL A  +IDEI+ IIR  D  +        RF+ ++ 
Sbjct: 365 NVVTRRTRYDLNKCEERAHILEGLLKALDHIDEIVRIIRAADTVEKAKQDLIARFAFSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +++SE + LL    +   +L+  ++  + I  E+ ++KE F
Sbjct: 425 QAQAIVDMRLRALTGLERGRLQSEYEELLRRIARYREILSDQRELLSVIREELTQLKEKF 484

Query: 487 SKSTDLGRRRTTF----CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            +     +RRT F                  +       +   +    R        +  
Sbjct: 485 GE-----KRRTQFAFDDALDDEDLIPDDDIVISSTRLGYIKRMSPENFRQQNRGGKGIRG 539

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
           +   + D+++    +     I+L +  G+ + +    +        G A+  L+ L   +
Sbjct: 540 MQTLDNDNIEDLFMSTNHHYIMLFTNKGRCFRIKGYEIPEASRTSRGTALVNLLKLQPEE 599

Query: 601 DIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +   F          L++ +  G       S+     + G   + +  ++++     V 
Sbjct: 600 RVNACFSLRDLSSEQYLVLATKSGLVKKTPLSQYANVRKNGLIAMNIREDDQLIEAKLVD 659

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            G+ + +V +    + F  + I    R   GVR      G    +   K+ +G   +  +
Sbjct: 660 PGEEIMLVTKKGMAIRFREEDIRSTGRSAMGVRGIRLDSGDEL-IGMQKLSQGGYLLLVS 718

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +           RGG G    +   ++G  + 
Sbjct: 719 EKGYGKLTATEEFKPQNRGGKGLHCYRITEKTGDLVG 755



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 53/148 (35%), Gaps = 8/148 (5%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I+L++  G A      ++ S       ++  I L+   +++          LL+VS KG 
Sbjct: 664 IMLVTKKGMAIRFREEDIRSTGRSAMGVRG-IRLDSGDELIGMQKLSQGGYLLLVSEKGY 722

Query: 623 AFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
             +    E     R GK      +   + + +        D  + ++     L+  S+++
Sbjct: 723 GKLTATEEFKPQNRGGKGLHCYRITEKTGD-LVGFKLCDQDREIMLITSEGILIRMSLEK 781

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFK 704
           +  + R   GV+       G + +    
Sbjct: 782 VSVIGRNTSGVKFMDLPKNGDTVIASIA 809


>gi|254291774|ref|ZP_04962559.1| topoisomerase IV, subunit A [Vibrio cholerae AM-19226]
 gi|150422286|gb|EDN14248.1| topoisomerase IV, subunit A [Vibrio cholerae AM-19226]
          Length = 761

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 283/751 (37%), Positives = 443/751 (58%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVDLEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+ K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERNKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|2645226|gb|AAB87144.1| topoisomerase II subunit A [Thermotoga maritima MSB8]
          Length = 804

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 228/751 (30%), Positives = 377/751 (50%), Gaps = 13/751 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +    +   L E YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  
Sbjct: 1   MPEILINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD  VYD+LVR+A PF  RYPLI GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKYHPHGDAPVYDALVRMAHPFTMRYPLIEGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++AE +L+ ++++ V+  D ++    E  V PSK PNL+ NG SGIAVGMAT+IP
Sbjct: 121 EARLTRLAEEMLEDIEKNTVNMIDNFDGTLKETEVLPSKVPNLIINGASGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A + LID+PE ++E+L+++I GPDFPTG  +V +   + + Y  GRG   V
Sbjct: 181 PHNLSETVDALIYLIDHPEATVEELMQFIKGPDFPTGA-VVVNASELKKVYEEGRGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  VE+  R    IV+TEIPY V K+ LIE+IA++        + +IRDES +    +
Sbjct: 240 RGKVHVEDGKR-VKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  + ++++ +++  + ++  F + M V+   + P++M L G+++ +L HR EV+
Sbjct: 299 VIEIPKDANEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ +  +   RR  +++GLL A   I  ++ I+RN       +  ++    +TE Q  
Sbjct: 359 RRRARYEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLMETLEITEEQAK 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE   +++E  +L+ +  ++  +L   ++    +  E   +K+ +   
Sbjct: 419 AILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKKEFLYLKQQYGDP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +               +       +  +     RS K     ++     E D
Sbjct: 479 RRTEVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLNSYRSQKRGGKGITVSKLSEDD 538

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            ++  + A  T   L ++  G+AY L             G  I   ++L   + IV    
Sbjct: 539 EVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALAS 598

Query: 608 YD-STCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH--VAV 663
            +     L++ +  G        E    T   G   +K+   +++     V  +   + V
Sbjct: 599 LNGEGRDLVIATKSGKIKRTALKEFENATSNRGVRAIKIEPGDEIVSARVVNSEKETLIV 658

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNR 721
             +    + F +  +  M R   GV+    + G  +  V      E    +    + + +
Sbjct: 659 ATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGEEGEILTVTEKGFGK 718

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                L  + +RGG G        ++G  ++
Sbjct: 719 RTPVQLYRIQRRGGTGLRNISDVNKTGYVVA 749



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 8/154 (5%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA--FVYDSTCKLLV 616
             + +++ +  G A   P  ++     +  A    I L    ++V+          ++L 
Sbjct: 652 EKETLIVATKMGMAIRFPVSDVRRMGRNA-AGVQAIKLQPGDEVVSVDVIPPGEEGEILT 710

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLI 672
           V+ KG              R G     +S   K   +  V  V GD  + VV  N  ++ 
Sbjct: 711 VTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVAVRYVRGDEEIVVVTRNGMMIR 770

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           F + +I  + R  KGV+L    D  IS V   K 
Sbjct: 771 FPVSEIGVIGRVTKGVKLIELGDDTISKVAVVKD 804


>gi|152985708|ref|YP_001351012.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PA7]
 gi|150960866|gb|ABR82891.1| DNA topoisomerase IV, A subunit [Pseudomonas aeruginosa PA7]
          Length = 754

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 273/757 (36%), Positives = 438/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++ +L E++ GPDFPT   I+  R  + + Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IV+  +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM  +F  +D+ET + +N+N++ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETTYRVNLNIIGLDGKPQVKDLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  FR+  ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF 
Sbjct: 356 EWLQYRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S  +    +  E+ + 
Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEARALSETELM-PTEPVTVVLSEKGWVRCAKGHDIDAAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y+LPA +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +   +     V     D
Sbjct: 590 ECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAAVVAPRPVRDVEQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F +  +P++ +GKG ++       ++        +          + 
Sbjct: 650 WLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+ +   +DL  + G+RG  G+ +P+GF R    
Sbjct: 710 AGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSL 746


>gi|77361500|ref|YP_341075.1| DNA topoisomerase IV subunit A [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876411|emb|CAI87633.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 764

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 270/758 (35%), Positives = 444/758 (58%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++TL+ + ++  ++    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L+ + +  VD+   ++    EPVV PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEILLKELGQGTVDWTPNFDGTMDEPVVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+D P+  +E+LL  +  PD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELEELLTLVHAPDYPTDAEIITPKADIHKIYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  E+       IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYTQEQGD-----IVITALPHQCSGGKVLEQIAAQMNAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKSYRVNLNMLGLDGRPQVKNLLTILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR  +R+  +  R+ IL+GLL A+LNIDE+I IIR+EDKPKPV++ RF 
Sbjct: 356 EWLVFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPVLMERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I+ E D L  E++K+   L S ++    +  EI+E 
Sbjct: 416 LTDIQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLQQTLGSDRRMSTLLKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            EI+        RR+   E   A KA  ++ +I  E +TVV+S++GW R  K H +D+  
Sbjct: 476 AEIYGD-----DRRSPVVERLEA-KALNEKDLIPSESVTVVLSDKGWARVGKGHDLDVQG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++ GD+ + +    +    + L + G+A+   A +L S R  GE +    +L+   + 
Sbjct: 530 LSYRAGDAYRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLSAGANF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +    LL+ S  G  FI +  ++++  + GK  + V     +   ++V     D
Sbjct: 590 EHVVMGEDNQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGLLLSPIRVNEVASD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI------SDVICFKICEGLTWID 713
           +   +    ++L+F +  +P++ +GKG ++ S     +        V+          + 
Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPEGSSVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  R      +DL  + G+RG  G+ +P+G  R  + +
Sbjct: 710 AGKRKLTLKPSDLEHYYGERGRRGNKLPRGLQRVDEAV 747


>gi|33240587|ref|NP_875529.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238115|gb|AAQ00182.1| DNA gyrase A subunit [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 875

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 233/789 (29%), Positives = 394/789 (49%), Gaps = 56/789 (7%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
              +E+ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL   
Sbjct: 15  PDELEDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSD 74

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  + PLI G GNFG+ID D  AA 
Sbjct: 75  RPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSIDNDPPAAM 134

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE+R+  + +  +L+ ++ + VDF D ++    EP V P++ P LL NG+SGIAVGMA
Sbjct: 135 RYTESRLRSLTQDSLLEDIESETVDFIDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMA 194

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  +ALI NP+++ +++++ I GPDFPTGG I+  R  I E+Y  GRG
Sbjct: 195 TNIPPHNLGELIDGLMALIANPDLNDQEIMKIIPGPDFPTGGQIL-GRSGIRETYLSGRG 253

Query: 249 GFRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
              +R    +E +          I++T++PYQ  K+ LIE+IA ++  K++  + DIRDE
Sbjct: 254 SVTMRGVAEIETLEIPGRPDRDAIIITQLPYQTNKAALIERIAYMVNDKKLEGISDIRDE 313

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  D   ++    R   P +++ ++F L+ +++ F  NM  L     P  + L  +L  +
Sbjct: 314 SDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVD-GEPITLSLLRMLNVF 372

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           L  R   + +R+ + ++  + R  +L GLL+A   +DEIIA+IR+       K  +    
Sbjct: 373 LDFRVITIEKRTKYLLRKAEERNHLLLGLLLALDQLDEIIALIRSASDTSVAKKQLQEIH 432

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LT+ Q DAIL ++LR L  LE  +I+ E ++LL +      +L++  + +  I  E+  
Sbjct: 433 GLTDVQADAILQMQLRRLTALESDKIRLEHEDLLVKISDFKDILSNKSRVYEIIKTELIS 492

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--- 538
           +KE F        RRT   ++    +      +I  E   V+++  G+++ +  +     
Sbjct: 493 IKEKF-----PQVRRTEILDLGSGLEDI---DLIANERSVVLLTETGYLKRMPVNEFEAT 544

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
                  S    +  + +K+ +  +  D +LL S  G +Y++PA  +       +   + 
Sbjct: 545 SRGTRGKSGTRSQGEEEVKLFISCNDHDNLLLFSVRGVSYSVPAYRVPQCSRAAKGTPVV 604

Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+ +   + I +      +D    LL+++  G       S        G   + +   +
Sbjct: 605 QLLPIPREESITSLISVSSFDDDNYLLMLTIGGFIKRTPVSAFSKIRANGLISINLEDGD 664

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFK 704
            ++ V   +  D V +  +    + F ++   +  + R  +GVR  + +DG     +   
Sbjct: 665 ALRWVRLASSADSVLIGSKAGMTIHFRLNDNELRPLGRTARGVRSMNLRDGDSLVSMDVL 724

Query: 705 IC---------------------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                  EG   + ++     +        L KR G+G    K 
Sbjct: 725 SKELADRIASTNDDEAINSNGQYEGPWILVASADGLGKRVPVTQFRLQKRSGMGLRAMKF 784

Query: 744 FPRSGKFLS 752
              + + + 
Sbjct: 785 RSDTDELVG 793



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLVVKVT-GDHVAVVG 665
               +LV S+ G    V  ++     R G     +K  S+ +++  +  +  G+ V +V 
Sbjct: 748 EGPWILVASADGLGKRVPVTQFRLQKRSGMGLRAMKFRSDTDELVGLKVLDKGEEVLLVS 807

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           E   ++  S D+I + SR   GVRLQ    G     I     +
Sbjct: 808 EKGVIVRTSADKISQQSRAATGVRLQRLDSGDHLSEIVLVPPQ 850


>gi|268610495|ref|ZP_06144222.1| DNA gyrase subunit A [Ruminococcus flavefaciens FD-1]
          Length = 874

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 242/782 (30%), Positives = 387/782 (49%), Gaps = 55/782 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
              V    +   ++   L YA+S I  RA+PD+RDG KPVHRRI++ + E GL    A++
Sbjct: 6   NSKVINSEIVDEMQNSMLNYAMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPDKAYR 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A  VG V+G+ HPHGD SVYD+LVRLAQ F  RYPL+ G GNFG+IDGD  AAYRYTE
Sbjct: 66  KCADTVGAVLGRYHPHGDASVYDALVRLAQDFSMRYPLVDGHGNFGSIDGDGPAAYRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++   +L  ++++ VDF   Y++   EPVV PS+FPNLL NG+ GIAVGMAT+IP 
Sbjct: 126 AKMAKLTLDMLTDINKETVDFTSNYDDRLKEPVVLPSRFPNLLVNGSVGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A   LI++P+ ++E+L+E+I GPDFPTGG I+  +  I  +Y  GRG   +R
Sbjct: 186 HNLGEVIDALKLLIEDPDCTLEQLMEHIQGPDFPTGG-IIMGKAGIRAAYATGRGKIILR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R   EE+  G  CI++ EIP+ ++K RL++ I +L+  KRI  L  IRDES +D   V+
Sbjct: 245 SRTHFEEIK-GRNCIIIDEIPFMLRKERLLKSINQLVKDKRIEGLYYIRDESDKDGMRVV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +   P++++  +F L+ ++    + M  L     P+++ L  +L+ +L  + +V+ 
Sbjct: 304 IELKKDAMPEIVLNKLFALTQLQDTVGIIMLALV-NGEPKILTLKQMLQHYLDFQVDVIQ 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------ 415
           RR+ + ++    R  IL+G ++A   IDE+IAIIR+    +                   
Sbjct: 363 RRTRYDLRKALERAHILQGFVLAADYIDEVIAIIRSSATVQEAKERMIERFKDVDMSALL 422

Query: 416 ----------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                      +  +  L+E Q +AI+ +RL  L  LE  +I  EL  LL +    + +L
Sbjct: 423 DRAQYDLTGLHIEDQKGLSEEQAEAIVQMRLGQLTGLERQKITDELYGLLTKISDFEDIL 482

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               + +  I  ++  +++ FS       RRT+   VS        + +I +E   V ++
Sbjct: 483 ADVNRVYGIIIDDLNTIRKKFSD-----DRRTSIENVSGE---VDIEDLIPEEDCVVTLT 534

Query: 526 NRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           N G+I+ +              ++ +  +E D +       + D +L +S  G  Y L  
Sbjct: 535 NNGYIKRMPLTEYKTQHRGGRGITGMKQREEDFVDEMFICGSHDNVLFISNLGIMYKLKC 594

Query: 578 GNLLSGRGHGEAIQ--LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII 632
             +  G           LI L+  + I        +     + +V+ KG       S   
Sbjct: 595 YEVPDGSKASRGFNLINLIPLSEGEKIAAMIKTTDFSEDKYITIVTKKGKIKRSNLSLYK 654

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
              + G   + +   +++  V    G+  + V   N   +    ++   MSR   GVR  
Sbjct: 655 NVRKNGLIAIGLDEGDEIAGVRMTDGNAQIFVATRNGMAIRIEENKGRSMSRSAHGVRAI 714

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             ++G     I  ++ EG T +      Y +        +  RGG G    K     G  
Sbjct: 715 KLREGDYVVSIA-RVREGATLLTVTENGYGKRTELDSYRIQNRGGYGLTNYKVDDVRGHV 773

Query: 751 LS 752
             
Sbjct: 774 CG 775



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 69/496 (13%), Positives = 150/496 (30%), Gaps = 33/496 (6%)

Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
           DF    I   +R  + ++         ++      +       I+ +    Q  K R+IE
Sbjct: 355 DFQVDVIQRRTRYDLRKALERAH---ILQGFVLAADYIDEVIAIIRSSATVQEAKERMIE 411

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           +  ++ ++  +      R +       +   K  S +    +  +  L  +       + 
Sbjct: 412 RFKDVDMSALLD-----RAQYDLTGLHIEDQKGLSEEQAEAIVQM-RLGQLTGLERQKIT 465

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
               G + ++   + IL +       ++   ++ R +  D R   ++ +       D I 
Sbjct: 466 DELYGLLTKISDFEDILADVNRVYGIIIDDLNTIRKKFSDDRRTSIENVSGEVDIEDLIP 525

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                        + R  LTE +        +  +        K   ++ + E     S 
Sbjct: 526 EEDCVVTLTNNGYIKRMPLTEYKTQHRGGRGITGM--------KQREEDFVDEMFICGSH 577

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA--TLQQAMIEKEPITV 522
            N        I  +++  +         G        +S  +K    ++     ++    
Sbjct: 578 DNVLFISNLGIMYKLKCYEVPDGSKASRGFNLINLIPLSEGEKIAAMIKTTDFSEDKYIT 637

Query: 523 VISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           +++ +G I+              L A+   EGD +          +I + + +G A  + 
Sbjct: 638 IVTKKGKIKRSNLSLYKNVRKNGLIAIGLDEGDEIAGVRMTDGNAQIFVATRNGMAIRIE 697

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                S           I L     +V+         LL V+  G     E        R
Sbjct: 698 ENKGRSMSRSA-HGVRAIKLREGDYVVSIARVREGATLLTVTENGYGKRTELDSYRIQNR 756

Query: 637 KGKTFLKVSSEE---KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
            G        ++    +  +  V   D + +V  +  ++      I  M R  KGVR+  
Sbjct: 757 GGYGLTNYKVDDVRGHVCGIKIVDEEDDIILVSSDGIIIRILASDIRVMGRIAKGVRVMR 816

Query: 692 YKDGGISDVICFKICE 707
             +G  + V+ F   E
Sbjct: 817 VNEG--AQVVAFTRAE 830


>gi|330828213|ref|YP_004391165.1| Topoisomerase IV subunit A [Aeromonas veronii B565]
 gi|328803349|gb|AEB48548.1| Topoisomerase IV subunit A [Aeromonas veronii B565]
          Length = 758

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 273/757 (36%), Positives = 442/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+   +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +EL+L  + +  V++   ++    EPVV P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSRFSELLLSELGQGTVEWTPNFDGTMKEPVVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A   L+DNP   ++ L+++I GPD+PT   I+  R+ I + Y 
Sbjct: 181 VGMATDIPPHNAREVAYACAELLDNPNAGLDVLMQHIQGPDYPTNAEIITPRDDIRKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA W  E+       IV+T +P+Q   ++++E+IA  ++AK++P++ D+RDE
Sbjct: 241 TGKGSIKQRAVWSEEDGD-----IVITALPHQASGAKIMEQIAAQMVAKKLPMVTDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVIVPRSNRVDVEGLMAHLFATTDLEKNYRVNLNILGLDNRPQVKCLKTILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  RRE + RR  FR+  +  R+ IL+GLLIAYLNIDE+I IIR ED+P  VMV RF+
Sbjct: 356 EWIQFRRETVRRRLQFRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDEPGKVMVERFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +TE Q +AIL L+LR L KLEE+++++E + L  E++K++ +L S ++    +  E+   
Sbjct: 416 ITETQAEAILELKLRHLAKLEEFKLRAEQNELAEERDKLELILGSERRLNTLLKKELLAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RRT   E + A   T ++ +   EP+TV++S++GW+R+ K H VD++ 
Sbjct: 476 AEKYGD-----DRRTPLVERATAVALTEKELI-PSEPVTVILSDKGWVRAAKGHDVDVAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +  + + LST G+ Y L +  L S R  GE +     L   +++
Sbjct: 530 LSYKAGDSYLAHACGRSNQQAVFLSTLGRTYALESHTLPSARSQGEPLTGRFALGAGEEV 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + +     L+ S  G  F+    ++I   + GK  L V    ++    K+     D
Sbjct: 590 RHLVMGNEGEPYLIASDAGYGFVCTYDDLIGKNKNGKALLTVPEGGQVMAPQKIGSPETD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS-----DVICFKICEGLTW-ID 713
               +    ++L+F ++ +P + +GKG +L S     +       V+   I +G +  + 
Sbjct: 650 LCMAISNEGRMLLFPLNTLPVLGKGKGNKLISIPSARVKAREEFVVMAAVIPQGQSVTLF 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R  + 
Sbjct: 710 AGKRKLTLKPSDLDYYRGERGRRGAKLPRGLQRVDRI 746


>gi|104783892|ref|YP_610390.1| DNA topoisomerase IV subunit A [Pseudomonas entomophila L48]
 gi|95112879|emb|CAK17607.1| DNA topoisomerase IV, subunit A [Pseudomonas entomophila L48]
          Length = 751

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 270/758 (35%), Positives = 439/758 (57%), Gaps = 24/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDLLDSL-EGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 60  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 120 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 180 VGMATDVPPHNLREVASACVRLLDEPKATLEQLCEHIQGPDYPTEAEIVTPRADILKLYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA + VE+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 240 TGKGSIRMRAVYRVEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D   LM+ +F  +D+E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 295 SDHENPCRIVIIPRSNRVDAAELMQHLFATTDLESTYRVNVNIIGLDGRPQLKSLRALLL 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR E+ PK  +++RF 
Sbjct: 355 EWLEFRIGTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEHPKQALIARFD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E++++ +LL S  +    +  E+ E 
Sbjct: 415 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQKRLTTLLGSDAKLRKLVRSELLED 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 475 AETYGD-----DRRSPIVERAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    +L+ + G++Y+L A +L S RG GE +   +        
Sbjct: 529 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGATF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + +     +V S  G  F+V+  ++ A  + GK  L + +  K+     V     D
Sbjct: 589 ECVLLPEDEALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVASREQD 648

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F +  +P++ +GKG ++       ++        +          + 
Sbjct: 649 WLAAVTTEGRLLVFKVADLPQLGKGKGNKIIGVPGDRVASREEFVTDLAVISEGSTLVLQ 708

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  R+ +   +DL  + G+RG  GS +P+GF R    +
Sbjct: 709 AGKRTLSLKPDDLEHYKGERGRRGSKLPRGFQRVDSLM 746


>gi|78776839|ref|YP_393154.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251]
 gi|78497379|gb|ABB43919.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251]
          Length = 827

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 234/756 (30%), Positives = 392/756 (51%), Gaps = 17/756 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN L  +N++ +++   L+  YL Y++S I  RA+PD+RDG KPVHRRI++AM ++ L  
Sbjct: 2   SNLLHNDNIQTINIEETLQSSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLSLSH 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           GA FKKSARIVG+VIG+ HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG++DGD+AAA
Sbjct: 62  GAKFKKSARIVGDVIGQYHPHGDTAVYDALVRMAQHFSMRMQLVDGQGNFGSVDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT+ A  +L+ ++++ V+  D Y+    EP V P++ PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN QEI     AL+ NP I + +L+E+I  PDFPTGG I   ++ I+++Y  GRG
Sbjct: 182 TNIPPHNPQEIMMGLKALLANPNIELYELMEHIKAPDFPTGGTIF-GKKGIMDAYATGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  + E       I++ E+PYQV K+RLIE IA L+  K I  + +IRDES  +
Sbjct: 241 RIKVRAKTHI-EKKGNKDIIIIDELPYQVNKARLIENIANLVKDKMIDGVSEIRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ ++F  + M+  F + + +  + + P++  +  ILK ++ HR
Sbjct: 300 GIRVVIELKKDAMSEIVLNNLFKQTSMQVTFGI-IMLSILNQEPRIFGIIDILKHFINHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTE 425
           + ++ RR+ F ++    R  IL+GL  A   IDEII +I++    +    +    F  + 
Sbjct: 359 KTIIIRRTIFDLEKAKARAHILEGLKKALDIIDEIIRVIKSSKNIEEARDNLVSEFDFSV 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  +I+++RL  L  LE  +I++EL  LL     ++S+L S +     I  E  E+  I
Sbjct: 419 IQAQSIVDMRLGRLTGLEREKIENELLELLKLITYLESILKSEEVLHGIIDQEFDELLTI 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           ++                          +       +           K       A+  
Sbjct: 479 YTDVRRTDVEDDYDDIDVEDLIPNEPMVVTITHRGYIKRVPLAQYEKQKRGGKGKIAVTT 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
            E D ++     +T D +L ++  G+ + L    +        G+A+  L++L  ++ I 
Sbjct: 539 YEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEGSRTAKGKAVVNLLNLVADEQIQ 598

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
           +      +     L+  + KG       SE       G   + +  ++ +          
Sbjct: 599 SINPTTDFSEEKSLVFFTKKGVVKRTNLSEFSNIRSNGVKAILLDDDDSIITAKIADKSI 658

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSA 715
            ++ ++ +  + + F +++  +  R  +GVR   +K  +  + D       +    +  +
Sbjct: 659 KYLFIMTKMSQCIKFDMEKTRDQGRNTRGVRGIKFKHAEDEVVDANIIA-NDEQEILVVS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +   +  +     L  RGG G +  K   ++GK++
Sbjct: 718 EKGIGKRTDAGEYRLTNRGGSGVIAMKMTAKTGKYV 753



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 76/230 (33%), Gaps = 22/230 (9%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTT 560
           ++        +E   V  + +G ++              + A+   + DS+  A  A  +
Sbjct: 598 QSINPTTDFSEEKSLVFFTKKGVVKRTNLSEFSNIRSNGVKAILLDDDDSIITAKIADKS 657

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD--IVTAFVYDSTCKLLVVS 618
            + L + T               +G        I   H +D  +    + +   ++LVVS
Sbjct: 658 IKYLFIMTKMSQCIKFDMEKTRDQGRNTRGVRGIKFKHAEDEVVDANIIANDEQEILVVS 717

Query: 619 SKGNAFIVEESEIIANTR--KGKTFLKV--SSEEKMKLVVKVTGD-HVAVVGENRKLLIF 673
            KG     +  E     R   G   +K+   + + +   + V  +  +  + +  K++  
Sbjct: 718 EKGIGKRTDAGEYRLTNRGGSGVIAMKMTAKTGKYVVGCLMVDEEMDMMALTKAGKMIRV 777

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVI------CFKICEGLTWIDSAG 716
            +  I + SR   GV +   K   ++ V            E  +  +S  
Sbjct: 778 DMQTISKSSRNTSGVYIV--KGDDVASVSRCPKQPIEDDEEDDSLFESNE 825


>gi|318040291|ref|ZP_07972247.1| DNA gyrase subunit A [Synechococcus sp. CB0101]
          Length = 846

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 239/774 (30%), Positives = 386/774 (49%), Gaps = 60/774 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K AR+VGEV+GK
Sbjct: 1   MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELIL 144
            HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE+R+  +  + +L
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLQALTTDSLL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + ++ + VDF D ++    EP V PS+ P LL NG++GIAVGMAT+IP HN+ E+ +  L
Sbjct: 121 EDIECETVDFIDNFDGSQQEPTVMPSRIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV--- 261
           ALI+NPE+   +L+  I GPDFPTGG I+  R  I E Y  GRG   +R    +E +   
Sbjct: 181 ALIENPELEDRELMRLIPGPDFPTGGQIL-GRSGIREMYTTGRGSVTMRGVASIETIEAK 239

Query: 262 -GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  D   ++    R  
Sbjct: 240 GRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDA 299

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
            P +++ ++F L+ +++ F   M  L     P ++ L  +L+ +L  R E + RR+ + +
Sbjct: 300 YPQVVLNNLFKLTPLQSNFSAYMLALVK-GEPVLLTLRKMLEVFLDFRVETIERRTRYLL 358

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLR 437
           +  + R  IL GLLIA  N+D IIA+IR+       +  ++ +F L+E Q DAIL ++LR
Sbjct: 359 RKAEERDHILLGLLIALDNLDAIIALIRSAADTATARAQLIEQFGLSEIQADAILQMQLR 418

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  LE  +I+ E ++LLA+      +L   ++    I  E+  ++  +        RRT
Sbjct: 419 RLTALEADKIRLEHEDLLAKITDYKDILARKERVLALITEELGVLRSRYDSP-----RRT 473

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGD 549
              +V    +      +I  E   V+++  G+++ +           +   +    +  +
Sbjct: 474 EILDVEGGLEDI---DLIANERSVVLLTENGYLKRMPVSEFEATSRGTRGKAGTRSQGEE 530

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV 607
           ++++ +  +  D +LL S  G  YT+PA  +       +   I  L+ +   + I +   
Sbjct: 531 AVRLFISCNDHDSLLLFSDRGVVYTVPAYRVPQCSRTAKGTPIVQLLPIPREEQITSLLA 590

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAV 663
              +     L++++S G       S        G   + +   + +  V     GD + +
Sbjct: 591 VSEFAEDAVLVMLTSGGYIKRTRLSAFANIRSNGLIAISLEEGDALTWVRLAQPGDSLLI 650

Query: 664 VGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVI------------------- 701
              N   + F +    +  + R  +GVR  + + G     +                   
Sbjct: 651 GSRNGMTIHFRLSDEELRPLGRTARGVRAMNLRPGDQLVSMDVLPVELADRVESSSAAAD 710

Query: 702 -----CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                     EG   + ++     +        L KR G+G    K F R G  
Sbjct: 711 EEDTEEVPPSEGPWVLVASASGLGKRVPVDQFRLQKRAGMGLRCMK-FRRDGDV 763



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVS-SEEKMKLVVK 655
           +++            +LV S+ G    V   +     R G     +K     + +  +  
Sbjct: 710 DEEDTEEVPPSEGPWVLVASASGLGKRVPVDQFRLQKRAGMGLRCMKFRRDGDVLVGLKV 769

Query: 656 V-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
           +  G+ + +V E   ++    D +P+ SR   GVRLQ    G     +     
Sbjct: 770 LGAGEELLLVSEKGVIVRMQADAVPQQSRAATGVRLQRLDSGDRLSEVVLVPP 822


>gi|251771683|gb|EES52258.1| DNA gyrase, A subunit [Leptospirillum ferrodiazotrophum]
          Length = 854

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 268/767 (34%), Positives = 398/767 (51%), Gaps = 32/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +             VS+   +   YL Y++S I  RA+PD RDG KPV RR++ AM EMG
Sbjct: 1   MDTPLPQDAPRETTVSIDEEIRTAYLNYSMSVIVGRALPDARDGLKPVQRRVLFAMHEMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +  G A++KSARIVG+VIGK HPHGD +VYD+ VRL QPF  RYPLI GQGNFG++DGD+
Sbjct: 61  VRPGTAYRKSARIVGDVIGKYHPHGDTAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDA 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+T++AE ++  +DE+ VD+   Y+E   EP V P+  P LL NG+SGIAV
Sbjct: 121 PAAMRYTEIRLTRLAEEMMAELDEETVDWSPNYDESLEEPRVLPASLPLLLLNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A L L+DNPE +   L+ ++ GPDFPTGG+I+  R  I  +YR 
Sbjct: 181 GMATNIPPHNITEVLNALLHLMDNPEATDSDLMTFVTGPDFPTGGVIL-GRSGIESAYRT 239

Query: 246 GRGGFRVRARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +R    VE+       C+V+ EIPY V K+RLIEKIAEL+  K+I  + DIRDE
Sbjct: 240 GRGSIVMRGVVEVEDSTRSDRQCLVIREIPYLVNKARLIEKIAELVREKKIEHIADIRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  D   ++    R   P ++M  +F+L+ +++ F  N   +     P+ + L   L+ +
Sbjct: 300 SDRDGMRIVVELKREAIPRIIMNQLFLLTPLQSSFGYNAVSIV-NGRPETLSLSQTLRVF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRF 421
           L  R++V+ RR+ FR++    R  IL+GL  A   IDEIIA+IR    P+       S F
Sbjct: 359 LGFRKDVVTRRTLFRLRKARERFHILEGLRRAIDLIDEIIALIRRSGSPEEARNGLVSTF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           + +E Q  AIL+LRL+ L  LE  +I++E   + A    ++++L S +     I  E R 
Sbjct: 419 AFSELQAQAILDLRLQRLTGLEREKIEAEYREVAALIASLEAILASREALLEVIRQETRV 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------- 533
           + E F        RRT              +A+I  EP  V +S  G+I+ +        
Sbjct: 479 LLERFGD-----GRRTVIVPDEGE---LTPEALIPDEPYIVTLSYEGYIKRMPDAVLPTQ 530

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
           +        +  KE D L   L+A   D +L  +  GK Y L    L        G+ + 
Sbjct: 531 RRGGKGRIGVTLKEDDCLIATLNARAHDTLLFFTDLGKVYRLKTYELPEAQRTARGKHLL 590

Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+ L+ ++ +        ++    LL  + KG       SE     + G     +   +
Sbjct: 591 SLLSLSPDERVAAILPVRSFEGDNLLLFGTVKGYFKKTRLSEYANIRQGGLIATVLEEGD 650

Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICF-KI 705
           ++  V+ +  D  + V       + F  D I    R  +GVR           V+ F ++
Sbjct: 651 RLARVLVLHPDRRLLVATRGGMSIRFEADNIRPTGRATRGVRAIRLSPDD--SVVSFEEV 708

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    + +  + + +  +  L  L KRGG G  + K  P +G  ++
Sbjct: 709 SDSDLLLVTTEKGFGKRVDTNLFRLQKRGGKGVRIAKVTPETGAVVA 755



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 5/153 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           DR LL++T G        + +   G        I L+ +  +V+      +  LLV + K
Sbjct: 661 DRRLLVATRGGMSIRFEADNIRPTGRATRGVRAIRLSPDDSVVSFEEVSDSDLLLVTTEK 720

Query: 621 GNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G    V+ +      R GK      +   +   + ++     D + VV +  +++    +
Sbjct: 721 GFGKRVDTNLFRLQKRGGKGVRIAKVTPETGAVVAILKVTERDDIDVVTDTGRVIRIPSE 780

Query: 677 QIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
           +I ++ RG KGV+L S  D     ++C  I   
Sbjct: 781 EIRKVGRGAKGVKLVSLSDSPQETIVCAAINPK 813


>gi|229514056|ref|ZP_04403518.1| topoisomerase IV subunit A [Vibrio cholerae TMA 21]
 gi|229349237|gb|EEO14194.1| topoisomerase IV subunit A [Vibrio cholerae TMA 21]
          Length = 761

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 283/751 (37%), Positives = 444/751 (59%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 LQADAILDTKLRHLAKLEEMKIRGEQDELERERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|12044854|ref|NP_072664.1| DNA gyrase subunit A [Mycoplasma genitalium G37]
 gi|255660023|ref|ZP_05405432.1| DNA gyrase subunit A [Mycoplasma genitalium G37]
 gi|1346233|sp|P47250|GYRA_MYCGE RecName: Full=DNA gyrase subunit A
 gi|1045672|gb|AAC71220.1| DNA gyrase, A subunit [Mycoplasma genitalium G37]
 gi|166078797|gb|ABY79415.1| DNA gyrase, A subunit [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 836

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 393/756 (51%), Gaps = 28/756 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             L    VK++SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++     G+   
Sbjct: 13  ENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHD 72

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F  RY LI G GNFG+IDGD  AA 
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++A  +L+ +D+D VDF   Y+ E+ EP V P+ FPNLLANG+SGIAVGM+T
Sbjct: 133 RYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMST 192

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIPSHN+ E+    + LIDNP+ + ++LL  I GPDFPTG  I+ ++  I   +  G+G 
Sbjct: 193 SIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTK-GIESYFETGKGN 251

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R++  +E++ +    +VVTEIPY V K+ LIEKI EL+ A+ I  + DIRDES+ + 
Sbjct: 252 VVIRSKVEIEQL-QTRSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++L+  +F  + ++ RFP+NM  L     P ++ +   L+ +L H+ 
Sbjct: 311 IRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVK-GAPVLLNMKQALEVYLDHQI 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTEN 426
           +VL R++ F +     R  IL GLLIA LNIDE++AII+     +     + ++F L E 
Sbjct: 370 DVLVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLNTKFKLDEI 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  A+L++RLRSL  LE  ++++E   L    E    +L   K Q   I  E++++ + F
Sbjct: 430 QAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCKKVLADQKLQLKIIKEELQKINDQF 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RR+         +    +++I+ E + + +S  G+++              V
Sbjct: 490 GDE-----RRSEIL--YDISEEIDDESLIKVENVVITMSTNGYLKRIGVDAYNLQHRGGV 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  L     DS+   L   T   +L  +  GK Y + A  +  G    +      LI +
Sbjct: 543 GVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPYGFRTNKGIPAVNLIKI 602

Query: 597 NHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             ++ I +    +          +  G       +E I     GK  +     + +  V+
Sbjct: 603 EKDERICSLLSVNNYDDGYFFFCTKNGIVKRTSLNEFINILSNGKRAISFDDNDTLYSVI 662

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           K  G D + +   N  ++ F  +Q+  +SR  +GV   S   G   + +      G   +
Sbjct: 663 KTHGNDEIFIGSTNGFVVRFHENQLRVLSRTARGVFGISLNKGEFVNGLS-TSSNGSLLL 721

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                   +  +     L KR   G    +   R+G
Sbjct: 722 SVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTDRTG 757



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 78/242 (32%), Gaps = 13/242 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-ITVVISNRGWIRSLKSH 536
            IR  +  +   T+ G       ++ + ++     ++   +       +  G ++    +
Sbjct: 578 RIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSVNNYDDGYFFFCTKNGIVKRTSLN 637

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                      A+ F + D+L   +  H  D I + ST+G         L         +
Sbjct: 638 EFINILSNGKRAISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLSRTARGV 697

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
              I LN  + +       +   LL V   G   +    +     R  K    +   ++ 
Sbjct: 698 FG-ISLNKGEFVNGLSTSSNGSLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTDRT 756

Query: 650 ---MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +        + + ++    K++  S+ ++ E  +   GV+L   KD    + +    
Sbjct: 757 GPVVTTTTVFGNEDLLMISSAGKIVRTSLQELSEQGKNTSGVKLIRLKDNERLERVTIFK 816

Query: 706 CE 707
            E
Sbjct: 817 EE 818


>gi|116073097|ref|ZP_01470359.1| DNA gyrase subunit A [Synechococcus sp. RS9916]
 gi|116068402|gb|EAU74154.1| DNA gyrase subunit A [Synechococcus sp. RS9916]
          Length = 878

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 236/788 (29%), Positives = 393/788 (49%), Gaps = 58/788 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+I
Sbjct: 135 ESRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    LALI+NPE+  E+LL  I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 195 PPHNLGELINGLLALIENPELEEEELLRIIPGPDFPTGGQIL-GRAGIRETYLTGRGSVT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++TE+PYQ  K+ LIE+IAE++  K++  + DIRDES  
Sbjct: 254 MRGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  +M  L     P ++ L  +L+ ++  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALV-NGEPILLTLRRMLQVFIDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLT 424
           R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  LT
Sbjct: 373 RVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQERHGLT 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q DAIL ++LR L  LE  +I+ E ++L+A+      +L   ++ +  I  E+ ++++
Sbjct: 433 DIQADAILQMQLRRLTALEADKIRLEHEDLVAKIADYKDILGRRERVFGIIQEELTQLRD 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SH 536
            +        RRT    ++   +      +I  E   V+++  G+++ +           
Sbjct: 493 RYPIE-----RRTEILNIAAGLEDI---DLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
           +   +    +  +++K+ +  +  D +LL S  G +Y LPA  +       +   +  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I T      +     LL+++S G       S        G   + +   + + 
Sbjct: 605 PIPREEAITTLLAVSEFSDDSDLLMLTSGGFIKRTRLSAFSNIRSNGLIAINLEEGDALT 664

Query: 652 LVV-KVTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKI-- 705
            V   V GD V +       + F +    +  + R  +GVR  + +DG     +      
Sbjct: 665 WVRQAVPGDSVLIGTRAGMTIHFRLSDEELRPLGRTARGVRSMNLRDGDALVSMDVLPVE 724

Query: 706 ---------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                                 EG   + ++     +        L KR G+G    K  
Sbjct: 725 LADKVAQSSDDAADDDEGSAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRGMKFR 784

Query: 745 PRSGKFLS 752
            +  + ++
Sbjct: 785 NQGDELVA 792



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSS-EEKMKLVVKV-TGDHVAVVG 665
               +LV S+ G    V  ++     R G     +K  +  +++  +  +  G+ + +V 
Sbjct: 747 EGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRGMKFRNQGDELVALRVLGAGEELLLVS 806

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           E   ++  S D IP+ SR   GVRLQ    G     +     +  +
Sbjct: 807 EKGVIVRTSADAIPQQSRAATGVRLQKLDKGDSLLKVVLVPPQAES 852


>gi|58584662|ref|YP_198235.1| DNA gyrase subunit A [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58418978|gb|AAW70993.1| DNA gyrase, topoisomerase II A subunit, GyrA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 900

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 248/830 (29%), Positives = 396/830 (47%), Gaps = 91/830 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  +S+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS+ G D G  +
Sbjct: 1   MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PLI GQGNFG++DGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSVDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+  V+  +L  +DE+ VDFR  Y+  +SEPVV P++FPNLL NG SG+AVGMAT+IP
Sbjct: 121 EARLQGVSHFLLNDIDENTVDFRPNYDGNESEPVVLPAEFPNLLVNGASGVAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI +A +  IDN E+++++LL+ + GPDFPTGG I+  R  I  ++  GRG   +
Sbjct: 181 PHNLGEIIDACVLYIDNHEVTLDELLKVVPGPDFPTGGTIL-GRSGIRSAFATGRGSIVI 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +E++ +    IV+ EIPYQV K +LIEKI EL+  ++I  + +IRDES +    V
Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEEKINGITEIRDESDKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    ++   D ++  I  L+ + + F +N  VL+    P +M L  I+  ++  R+EVL
Sbjct: 300 VIDLRKNAAADFILNQILGLTPLRSSFSVNTLVLN-NNRPVLMSLKEIIVAFVDFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            RR+ FR++    +  I  GL IA L+IDE+I I+R    P+                  
Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIVRGTKDPEEANKKLLNKEWKTSAEIN 418

Query: 420 ----------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                            + LTE Q  AIL+++L+ L  LE  ++++EL++++   ++  +
Sbjct: 419 TIIGLISDSMSFLKDGVYRLTELQTKAILDIKLQRLTGLERDKLEAELNSMVNLVKEYIA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            L S ++   +I   ++EV+  F+         +                +       + 
Sbjct: 479 FLGSEEKLMKEIKNNLQEVRNRFAVPRKTVIEESDADIEVEDLIPQEDMVVTVTMNGYIK 538

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-- 581
                  R+ +           KE D +      +T   +L  S  G+ Y L    L   
Sbjct: 539 RVKLSHYRTQRRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNIGRVYRLKVYKLPLA 598

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRK 637
                G A+  +  L   + I          D +  ++  ++ GN      ++       
Sbjct: 599 EPTARGRALVNIFPLADGETITNIMPLPSESDESQNIVFATAHGNIRRNSLADFHYIPSN 658

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSY-K 693
           GK  +K+   +K+  V      DHV +     K + F +  + +  SR   GVR     K
Sbjct: 659 GKIAIKLDEGDKLVSVKVCNETDHVLLSTMLGKSIRFIVSDVRQFKSRNSDGVRGIKLAK 718

Query: 694 DGGISDVICFK------------------------------------------------- 704
           +  +  +                                                     
Sbjct: 719 NDSVISMTILNGIGVTTETKELYLKVPLAKRLETAVNNSIDSKLEKVLNDLGIDNKLFLK 778

Query: 705 -ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   +      + +  +     +  RGG+G        R+G  ++S
Sbjct: 779 LAANEEFILTITENGFGKRTSAYEYRVTNRGGIGITNILTTNRNGNVVAS 828



 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 66/555 (11%), Positives = 152/555 (27%), Gaps = 74/555 (13%)

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
               ++ S + I+ ++   R    +R R             +   +   V     + KI 
Sbjct: 335 NNRPVLMSLKEIIVAFVDFRKEVLIR-RTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIV 393

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
                      + +  E      I       S     L + ++ L++++T+  L++ +  
Sbjct: 394 RGTKDPEEANKKLLNKEWKTSAEINTIIGLISDSMSFLKDGVYRLTELQTKAILDIKLQR 453

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
           +  + +   L+  L   +   +E +    S      + +  + +      +    +I   
Sbjct: 454 LTGLER-DKLEAELNSMVNLVKEYIAFLGSEEKLMKEIKNNLQEVRNRFAVPRKTVIEES 512

Query: 408 RNEDKPKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
             + + +  +      +T      I  ++L   R             L  E       + 
Sbjct: 513 DADIEVEDLIPQEDMVVTVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITKLFVG 572

Query: 467 SGKQQWNQIAC-----EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-- 519
           +        +       ++  K   ++ T  GR       ++  +  T    +  +    
Sbjct: 573 NTHTSLLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPLADGETITNIMPLPSESDES 632

Query: 520 -ITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
              V  +  G IR           S    A+   EGD L      + TD +LL +  GK+
Sbjct: 633 QNIVFATAHGNIRRNSLADFHYIPSNGKIAIKLDEGDKLVSVKVCNETDHVLLSTMLGKS 692

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD----------------------- 609
                 ++   +         I L  N  +++  + +                       
Sbjct: 693 IRFIVSDVRQFKSRNSDGVRGIKLAKNDSVISMTILNGIGVTTETKELYLKVPLAKRLET 752

Query: 610 -----------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                                        +   +L ++  G        E     R G  
Sbjct: 753 AVNNSIDSKLEKVLNDLGIDNKLFLKLAANEEFILTITENGFGKRTSAYEYRVTNRGGIG 812

Query: 641 FLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              +     +   +        D++ ++ +  KL+  S++ I    R  +GV L   +  
Sbjct: 813 ITNILTTNRNGNVVASFPVEQDDNIMLITDKGKLIRISVNGIRIAGRSTQGVTLFKTESR 872

Query: 696 GISDVICFKICEGLT 710
                       G T
Sbjct: 873 EKVVSAAKIEDPGST 887


>gi|304310491|ref|YP_003810089.1| Topoisomerase IV subunit A [gamma proteobacterium HdN1]
 gi|301796224|emb|CBL44432.1| Topoisomerase IV subunit A [gamma proteobacterium HdN1]
          Length = 751

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 270/759 (35%), Positives = 443/759 (58%), Gaps = 25/759 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++   + E+ V+ ++L+   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTDQIEINEDGVERLALKTYTERAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G+ D   
Sbjct: 61  LKNSAKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGSPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R++  AE++L  + +  VD++  ++    EPV+ P++ PN+L NG +GIA
Sbjct: 121 SFAAMRYTESRLSPYAEVLLSELGQGTVDWQPNFDGTLEEPVLLPARLPNVLLNGATGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+  A + L+ +P  S++ L E + GPDFPT   I+  R  ++  Y 
Sbjct: 181 VGMATDIPPHNLGEVTRACIRLLKDPGCSLDDLCEDVPGPDFPTEAEIITPRHELIRMYA 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +      R    IV+T +P+QV  +R++E+IA+ + AK++P+++D+RDE
Sbjct: 241 TGRGSIKMRAVYT-----REGSDIVITALPHQVSGARILEQIAQQMNAKKLPMVQDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +NMN++ +   P+V  L  IL 
Sbjct: 296 SDHENPTRLVIIPRSNRVDVEALMGHLFATTDLERNYRVNMNMIGLDGRPRVRGLYDILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  +R+  +  R+  L+GLLIA+LNIDE+I IIR ED PKP ++ RF 
Sbjct: 356 EWLEFRITTVRRRLQWRLDKVLERLHKLEGLLIAFLNIDEVIHIIRTEDDPKPRLMERFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +++ Q +AIL L+LR L KLEE +I+ E   L  E++ ++S+L S ++  N+I  E+   
Sbjct: 416 ISDIQAEAILELKLRHLAKLEEMKIRGEQAELEKERKDLESVLGSAQKLKNKIVKELEAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +  +     RR+   E   A      + +  + P+TV++S +GW+R+ K H +D + 
Sbjct: 476 IERYGDA-----RRSPLIEREEARAMDETELVGAE-PVTVILSQKGWVRAAKGHDIDAAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+L       +   ++ + + G++YTLPA  L S RG GE +   +        
Sbjct: 530 LSYKTGDALLGIAQGKSNQTVIFIDSTGRSYTLPAHGLPSARGQGEPLIGKLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               +     + L+ S  G  F+++ S+     + GK  L V    K+    KV+    +
Sbjct: 590 EALLMGADHDRYLLASDAGYGFVMKLSDAETRNKAGKALLSVPENAKVLAPRKVSDIDRE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
           +VA V  + +LL+F + ++PE++RGKG ++          ++  + DV+     + L   
Sbjct: 650 YVAAVANDGRLLVFPLKELPELARGKGNQMMGIPSAKAKAREEYLVDVLLMTEADQLLI- 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            S  R      +DL  +LG+RG  G+ +P+GF    +  
Sbjct: 709 CSGKRQLTMKFSDLQHYLGERGRRGNKLPRGFQSVDRLA 747


>gi|258646171|ref|ZP_05733640.1| DNA gyrase, A subunit [Dialister invisus DSM 15470]
 gi|260403557|gb|EEW97104.1| DNA gyrase, A subunit [Dialister invisus DSM 15470]
          Length = 815

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 263/751 (35%), Positives = 410/751 (54%), Gaps = 34/751 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +    L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E G+    A+K
Sbjct: 5   EGKIVNTPLERQMKTSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMNEAGMLPNKAYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VYDS VR+AQ F  RYPL+ G GNFG+IDGDSAAA RYTE
Sbjct: 65  KSARIVGDVLGKYHPHGDTAVYDSAVRMAQDFSIRYPLVDGHGNFGSIDGDSAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM ++   +L+ +D+D VDF   Y+   +EP+V PS+ PNLL NG+ GIAVGMAT++P 
Sbjct: 125 MRMAKITLEMLRDIDKDTVDFMPNYDGSLTEPLVLPSRIPNLLVNGSYGIAVGMATNVPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+     A+IDNPEI+I++L++YI GPDFPT   I++  + I ++YR GRG   VR
Sbjct: 185 HNLAEVVNGLCAMIDNPEITIDELMKYIKGPDFPTAA-IIQGHKGIEDTYRTGRGSITVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +EE+ RG   I+VTE+PYQV K+RL+E IA+L   K I  +  +RDES      ++
Sbjct: 244 ARVDIEEMERGKNRIIVTELPYQVNKARLVEMIADLSRQKVIDGITALRDESDRSGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                 ++P +++ +++  + M+  F   M  L     P+++ L  IL  +L H+ EV+ 
Sbjct: 304 IELRSDVNPQIMLNNLYKHTQMQVNFGSIMLALVD-GHPRILNLKQILYYYLKHQEEVIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RRS + ++  + +  IL+GLLIA  +IDE+I  IR        K  ++S+F L+E Q  A
Sbjct: 363 RRSRYELEKAEAKAHILEGLLIALDHIDEVIRTIRESRTDEVAKTALISKFGLSEKQAVA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RLR L  LE  +I+++  ++      +  LL+S ++    +  E+ + K  F    
Sbjct: 423 ILDMRLRRLTGLERDKIEADYKDVQETIAYLRDLLSSREKIMGVVKAELTDEKNNFGD-- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
              +RRT   E++ A        +I  +P+T+ ++ + +I+          K     +S 
Sbjct: 481 ---KRRT---EIAAALGDMDVTDLIPDKPMTITLTKQNYIKRIDSSDLRTQKKGGRGVSG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID---LNHN 599
           L  K+GD ++  L   T DRIL  +  GK Y   A ++           ++     L  +
Sbjct: 535 LKMKDGDYVRKILTTSTHDRILFFTNKGKVYMKTAYDIPESSRTARGSAMINFITSLGAD 594

Query: 600 QDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + +      D     T  LL+V+  G        E     + G   +++  E+++  V+ 
Sbjct: 595 EHVTELLDLDISEEGTKYLLMVTKYGYIKKTALEEYKNINKNGLIAMRLKDEDRLVAVLP 654

Query: 656 VTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           V G + + +       + FSID   +  +SR   GV     K+G     +     + +  
Sbjct: 655 VKGNEEIIMGTRKGMAIRFSIDDDNVRPLSRSASGVHGMRLKEGDDVVGVVVAAEKDIFT 714

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           I + G +  +        L  R G G++  K
Sbjct: 715 ISADGNA--KRNAASAYRLQGRNGQGTINFK 743



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 3/188 (1%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                     +   L A+  K+ D L   L     + I++ +  G A      +      
Sbjct: 624 KTALEEYKNINKNGLIAMRLKDEDRLVAVLPVKGNEEIIMGTRKGMAIRFSIDDDNVRPL 683

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              A  +        D V   V  +   +  +S+ GNA     S      R G+  +   
Sbjct: 684 SRSASGVHGMRLKEGDDVVGVVVAAEKDIFTISADGNAKRNAASAYRLQGRNGQGTINFK 743

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS--RGKGVRLQSYKDGGISDVIC 702
              ++  +V     D +  + E    +    DQI       G+GV LQ  ++G     I 
Sbjct: 744 KGYEVVALVAADDRDELVGISEQGITIRIPADQISSKKAKGGQGVILQRLEEGDRIASID 803

Query: 703 FKICEGLT 710
                   
Sbjct: 804 VVSEPEED 811


>gi|497648|gb|AAA57072.1| DNA gyrase subunit A [Mycoplasma genitalium]
          Length = 836

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 393/756 (51%), Gaps = 28/756 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             L    VK++SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++     G+   
Sbjct: 13  ENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHD 72

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F  RY LI G GNFG+IDGD  AA 
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++A  +L+ +D+D VDF   Y+ E+ EP V P+ FPNLLANG+SGIAVGM+T
Sbjct: 133 RYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMST 192

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIPSHN+ E+    + LIDNP+ + ++LL  I GPDFPTG  I+ ++  I   +  G+G 
Sbjct: 193 SIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTK-GIESYFETGKGN 251

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R++  +E++ +    +VVTEIPY V K+ LIEKI EL+ A+ I  + DIRDES+ + 
Sbjct: 252 VVIRSKVEIEQL-QTRSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++L+  +F  + ++ RFP+NM  L     P ++ +   L+ +L H+ 
Sbjct: 311 IRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVK-GAPVLLNMKQALEVYLDHQI 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTEN 426
           +VL R++ F +     R  IL GLLIA LNIDE++AII+     +     + ++F L E 
Sbjct: 370 DVLVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLNTKFKLDEI 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  A+L++RLRSL  LE  ++++E   L    E    +L   K Q   I  E++++ + F
Sbjct: 430 QAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCKKVLADQKLQLKIIKEELQKINDQF 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RR+         +    +++I+ E + + +S  G+++              V
Sbjct: 490 GDE-----RRSEIL--YDISEEIDDESLIKVENVVITMSTNGYLKRIGVDAYNLQHRGGV 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  L     DS+   L   T   +L  +  GK Y + A  +  G    +      LI +
Sbjct: 543 GVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPYGFRTNKGIPAVNLIKI 602

Query: 597 NHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             ++ I +    +          +  G       +E I     GK  +     + +  V+
Sbjct: 603 EKDERICSLLSVNNYDDGYFFFCTKNGIVKRTSLNEFINILSNGKLAISFDDNDTLYSVI 662

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           K  G D + +   N  ++ F  +Q+  +SR  +GV   S   G   + +      G   +
Sbjct: 663 KTHGNDEIFIGSTNGFVVRFHENQLRVLSRTARGVFGISLNKGEFVNGLS-TSSNGSLLL 721

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                   +  +     L KR   G    +   R+G
Sbjct: 722 SVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTDRTG 757



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 78/242 (32%), Gaps = 13/242 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-ITVVISNRGWIRSLKSH 536
            IR  +  +   T+ G       ++ + ++     ++   +       +  G ++    +
Sbjct: 578 RIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSVNNYDDGYFFFCTKNGIVKRTSLN 637

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                      A+ F + D+L   +  H  D I + ST+G         L         +
Sbjct: 638 EFINILSNGKLAISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLSRTARGV 697

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
              I LN  + +       +   LL V   G   +    +     R  K    +   ++ 
Sbjct: 698 FG-ISLNKGEFVNGLSTSSNGSLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTDRT 756

Query: 650 ---MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +        + + ++    K++  S+ ++ E  +   GV+L   KD    + +    
Sbjct: 757 GPVVTTTTVFGNEDLLMISSAGKIVRTSLQELSEQGKNTSGVKLIRLKDNERLERVTIFK 816

Query: 706 CE 707
            E
Sbjct: 817 EE 818


>gi|311695410|gb|ADP98283.1| DNA topoisomerase IV subunit A [marine bacterium HP15]
          Length = 769

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 286/757 (37%), Positives = 445/757 (58%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T  +E  + VSLR   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+G
Sbjct: 1   MPEFQT-TDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   
Sbjct: 60  LKSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+   AE++L  + +  VD+   ++    EP V P++ P++L NGT+GIA
Sbjct: 120 SFAAMRYTESRLAPFAEVLLGELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A + L+D PE ++++L E+I GPDFPT   I+  R+ I + Y 
Sbjct: 180 VGMATDIPPHNVREVTAACIRLLDQPESTVDELCEHIKGPDFPTQAEIITPRKDIRQMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RARW + E G     IVVT++P+QV  +R++E+IA  +  K++P++ D+RDE
Sbjct: 240 TGRGSLRMRARW-IRESGE----IVVTDLPHQVSGNRVLEQIAHQMQTKKLPMVADLRDE 294

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  + +N+NV+     P V  L  IL 
Sbjct: 295 SDHENPTRLVIVPRSNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLHQILT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR   R+  +  R+ IL+GLLIAYLNIDE+I IIR EDKPK  +++RF 
Sbjct: 355 EWLTFRRTTVIRRLQHRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDKPKAELMARFG 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+ +Q +AIL L+LR L KLEE +I+ E D L AE++++ S+L S  +    I  E++  
Sbjct: 415 LSADQAEAILELKLRHLAKLEEMKIRGEQDELAAERDELQSILGSEDRLRELIKSEMQAD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E F        RR+   E   A KA  +  +I  +P+TVV+S +GW+R+ K H ++   
Sbjct: 475 AETFGD-----DRRSPIVEREEA-KAFSEVDLISNDPVTVVLSEKGWVRAAKGHDIEPEG 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD   +A       + + L + G+AY+L A +  S RG GE +   I+       
Sbjct: 529 LSYKAGDRFSLAARGRNNQQTIFLDSTGRAYSLMAHSFPSARGQGEPLTGRINPPSGASF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + D + K L+V+  G  F+   +++I+  R GK  + V    ++   + +      
Sbjct: 589 SGLLMGDPSRKALLVTDGGYGFVTSLNDMISKNRNGKAVVSVPKGARIMPPLTIPTTEKT 648

Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTW 711
             +  V    ++L+F + ++PE+++GKG ++ S        ++  +  V  F   + L  
Sbjct: 649 LYLGAVSNEGRMLVFPLSELPELAKGKGNKIISIPSARVQSREEYVVAVAVFAEDDQLEI 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             +  R      +DL  +LG+RG  G  +P+G  R  
Sbjct: 709 -RAGKRKMGLQFSDLEHYLGERGRRGHKLPRGLQRVD 744


>gi|307295585|ref|ZP_07575421.1| DNA topoisomerase IV, A subunit [Sphingobium chlorophenolicum L-1]
 gi|306878624|gb|EFN09844.1| DNA topoisomerase IV, A subunit [Sphingobium chlorophenolicum L-1]
          Length = 762

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 377/764 (49%), Positives = 519/764 (67%), Gaps = 21/764 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++      + +K      AL +RYL YALSTI  R++PDLRDG KPVHRR++ AM  + 
Sbjct: 1   MTDFRDPF-DAIKDHPFDDALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLR 59

Query: 66  LDFGAA---------------FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           ++ G A               +KK AR+VG+VIGK HPHGD SVYD++VRLAQ F  R P
Sbjct: 60  MEPGGASPDVLVANPARNTTSYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTP 119

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFGNIDGD+AAA RYTEAR+TQ A  ++ G+DE  V+FR TYN ED EP VFP 
Sbjct: 120 LVDGQGNFGNIDGDNAAAMRYTEARLTQAAADLMAGLDEGTVEFRPTYNGEDQEPEVFPG 179

Query: 171 KFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGG 230
            FPNLLANG +GIAVGMATSIP HNV E+ +AA  LIDNP+     L++ + GPDFPTGG
Sbjct: 180 LFPNLLANGATGIAVGMATSIPPHNVSELIDAASLLIDNPDAEHADLMQVVRGPDFPTGG 239

Query: 231 IIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
           ++V+S   I E+Y  GRG FR RARW  E+ GRG+W  VVT+IP+QVQKS+LIE+IA LI
Sbjct: 240 VLVDSASIISEAYATGRGSFRTRARWHKEDGGRGTWVAVVTQIPFQVQKSKLIEQIAALI 299

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
             +++P+L D+RDES E +RIV+ P+ R++DPDLLM+S+F L+D+E RFPLN+NVL   R
Sbjct: 300 NDRKLPILADVRDESDEQIRIVIEPRGRTVDPDLLMDSLFRLTDLENRFPLNLNVLDATR 359

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
            P+V+ L  +L EWL H+ +VL +R+  R+  I  R+E+L G +IAYLN+D +I IIR E
Sbjct: 360 TPRVLGLKPVLIEWLKHQIDVLVKRAQHRLDKIAARLELLDGYIIAYLNLDRVIEIIRTE 419

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           D+PK VM++ F L + Q +AILN+RLRSLRKLEE +++ E   LL E++ +  L+ S  +
Sbjct: 420 DEPKEVMMAEFGLNDRQAEAILNMRLRSLRKLEEMELRREHSELLKERDDLLKLVESPAR 479

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
           Q  ++  ++ ++++ +S  +D GRRRT   E + A +    +AMIEKEPITV++S RGWI
Sbjct: 480 QRTRLKKDLADLRKRYSPDSDFGRRRTLVEEAAPA-REIPLEAMIEKEPITVILSERGWI 538

Query: 531 RSLKSHSVD--LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           R++  H        L FKEGD   IA HA TTD++LL +  G+ +TL A  L  GRG G+
Sbjct: 539 RAMSGHRDLASADTLKFKEGDGPMIAFHAQTTDKLLLATETGRIFTLGADKLPGGRGFGD 598

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            ++ L+D++    IV      +  +LL+ SS G  F+   +++IA TRKGK  + V +  
Sbjct: 599 PVRSLVDMDGTGQIVALMPARTGGELLLASSDGRGFVAAVADVIAETRKGKQVVNVRTGA 658

Query: 649 KMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC 706
           K+ +V  +    D VAVVGENRKLL+FS+ ++P M+RG+GV++Q Y+DGG+SD I F++ 
Sbjct: 659 KLSVVHPIAADADSVAVVGENRKLLVFSLIEMPRMARGQGVQMQRYRDGGLSDAIAFRLS 718

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +GL+W    G    R+E D+  W   RG  G + P GFPR  +F
Sbjct: 719 DGLSWAMGGGSGRVRTEADMTPWRVARGAAGRMPPTGFPRDNRF 762


>gi|114768820|ref|ZP_01446446.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255]
 gi|114549737|gb|EAU52618.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255]
          Length = 905

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 253/833 (30%), Positives = 398/833 (47%), Gaps = 96/833 (11%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            ++  +   +   +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G 
Sbjct: 10  DDTPEIPSYDGPQISIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHENGY 69

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               +++KSA+ VG+V+G  HPHGD ++YD+LVR+AQ F    PLI GQGNFG++DGD+A
Sbjct: 70  THNKSYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDNA 129

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+ + +E +L  +D++ V+F+D Y+ ++SEP V P+++PN+L NG  GIAVG
Sbjct: 130 AAMRYTEARLDKPSEYLLLDIDKNTVNFQDNYDGKESEPTVLPARYPNMLVNGAGGIAVG 189

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +A LALIDNPE++   L+EY+  PDFPTG +I+  R   V++Y  G
Sbjct: 190 MATNIPPHNLGEVIDATLALIDNPELTSSDLMEYVPAPDFPTGAVIL-GRSGAVKAYNEG 248

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +RA+  VEE+  G + I++ EIPYQV K+ +IEKIAEL   K+I  +  ++DES 
Sbjct: 249 RGSVIIRAKTRVEEIRAGRYAIIIDEIPYQVNKASMIEKIAELSRDKKIEGISHVQDESD 308

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                V+    R    ++++  +F  + ++T F  NM  L+ G  P+ + L   L  +++
Sbjct: 309 RVGVRVVVELKRDATAEVVLNQLFRFTPLQTSFGCNMLALN-GGKPEQLTLYKFLSYFIS 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------- 415
            R EV+ RR++F +     R  IL GL +A  N+DEI+A IR  + P             
Sbjct: 368 FREEVVARRTAFELNKARERSHILCGLAVAVSNVDEIVATIRGSNDPAEAREKLMTRRWP 427

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  ++L+E Q  AIL LRL+ L  +   ++  EL+ L  +
Sbjct: 428 AADISQYISLIDDPSHTLNEDKSYNLSETQARAILELRLQRLTAMGVKEVTDELEELAGK 487

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +    +L S  +  + I+ E++EV E F+       RRT   E +        + +IEK
Sbjct: 488 IQNYLEILRSRDRIMSIISDELKEVHEKFAVP-----RRTEIIEWAGDMD---DEDLIEK 539

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V I+N G+I+          K     +  +  K+ D +     A+T   +L  +TD
Sbjct: 540 EDMVVTITNSGYIKRTNLAEFREQKRGGKGIQGMSTKDEDFVTNMFVANTHTALLFFTTD 599

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKG 621
           G  Y L    L        G+AI  ++ ++    I      D+        +++  +  G
Sbjct: 600 GMVYKLKTWRLPLGGRNAKGKAIVNILPIDTGVSIAALMPIDAPDEEWGNLQIVFATDAG 659

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK-VTGDHVAVVGENRKLLIFSIDQIPE 680
                  S+       GK  +K+     +  V      D   +     K + F    +  
Sbjct: 660 GVRRNALSDFTNVKSNGKIAMKLPEGVSIVNVRIATESDDFLLTTSLGKAIRFPTTDVRV 719

Query: 681 -MSR-GKGVRLQSYKDGGISDVICF-------------------KICEGLT--------- 710
              R   GVR      G     +                      + E  T         
Sbjct: 720 FKGRDSTGVRGIKLAPGDKVVSMAVIRHVNASSDERTAYFKMRRALSEDETPNNDISQER 779

Query: 711 ----------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      +      + +  +     +  RGG G        R    +++
Sbjct: 780 YNELSELEDWILIITSGGFGKRSSAHEYRVSGRGGQGVAAANLDRRDDTVVAA 832


>gi|7437481|pir||T10970 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Streptomyces coelicolor
 gi|436028|gb|AAA65216.1| DNA gyrase [Streptomyces coelicolor A3(2)]
 gi|1093585|prf||2104262E DNA gyrase
          Length = 864

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 232/778 (29%), Positives = 382/778 (49%), Gaps = 29/778 (3%)

Query: 1   MGVDNI---SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  +N    +     +   V+ V L   ++  YL YA+S I  RA+P +RDG KPVHRR+
Sbjct: 1   MTDENTPVTTPEGDALAMRVEPVGLETEMQRSYLDYAMSVIVSRALPVVRDGLKPVHRRV 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+   D AAA RYTE +M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL 
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIV 233
           NG++GIAVGMAT+IP HN++E+   A   ++N E S E+    L+E I GPDFPTG  +V
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGA-LV 239

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   
Sbjct: 240 VGRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDG 298

Query: 294 RIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           ++  + D+RDE S+   + ++    R     +++ +++  +D+++ F  NM  L    VP
Sbjct: 299 KVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVD-GVP 357

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           + + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D 
Sbjct: 358 RTLSLDAFIRHWVNHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDT 417

Query: 413 PKPVMVSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
            +           + E Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  
Sbjct: 418 VEIARGGLMDLLEIDEIQANAILEMQLRRLAALERQKIVREHDELQAKITEYNEILASPV 477

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +Q   ++ E+  + E +                     A     +       +  +    
Sbjct: 478 RQRGIVSEELTALVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKRTKTDD 537

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
            R+ K     +     KE D +     + T   +L  +  G+ Y   A  L        G
Sbjct: 538 YRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARG 597

Query: 588 EAIQLLIDLNHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L+    ++ I        Y++   L++ +  G        +  +    G   + +
Sbjct: 598 QHVANLLAFQPDETIAQIRAIRDYEAVPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINL 657

Query: 645 SS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
                  ++++     V+  D + ++ +  + + F+     +  M R   GV+  S+++G
Sbjct: 658 REQADGSDDELIGAELVSAEDDLLLISKKAQSIRFTASDDTLRPMGRATSGVKGMSFREG 717

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +      G     +    Y +  +     +  RGG+G    K     G  + +
Sbjct: 718 DELLSMNVVRA-GTFVFTATDGGYAKRTSVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 774


>gi|184199652|ref|YP_001853859.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
 gi|183579882|dbj|BAG28353.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
          Length = 880

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 222/765 (29%), Positives = 381/765 (49%), Gaps = 36/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +     +  + V+ + L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++ M + G
Sbjct: 1   MVEDVEVTSDRVEQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYTMYDGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                +F K AR+VG+V+G  HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+   D 
Sbjct: 61  YRPERSFNKCARVVGDVMGNYHPHGDSAIYDALVRLIQNWTMRYPLALGQGNFGSPGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE +M  +A  +++ + ED VDF+D Y+ +  EP V PS+FPNLL NG++GIAV
Sbjct: 121 AAAPRYTETKMAPLAMEMVRDIHEDTVDFQDNYDGKQQEPTVLPSRFPNLLVNGSAGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ +     + NP    E  +E+L++ + GPDFP+G  I+   + I +
Sbjct: 181 GMATNIPPHNLREVADGVQWYLQNPDVDRETLLEELIKRVKGPDFPSGAQIL-GHKGIEQ 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG    RA   VEE+     C+VVTE+PYQV    L  KIA+L+   ++  + D+
Sbjct: 240 AYRTGRGSITQRAVVSVEEI-HNRTCLVVTELPYQVNPDNLAIKIADLVKDGKVQGIADM 298

Query: 302 RDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           RDE++    + ++    R   P +++ +++  + ++  F  NM  L    VP+ + LD  
Sbjct: 299 RDETSGRTGQRLVIVLKRDAVPKVVLNNLYKHTQLQENFSANMLALVD-GVPRTLSLDAF 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           +  W++H+ +V+ RR+ +R++       IL GLL A   +DE+IA+IR     +      
Sbjct: 358 VHHWVSHQMDVIVRRTRYRLKQAQEEAHILLGLLKALDALDEVIALIRRSPTVEEARNGL 417

Query: 421 F---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + E Q  AILN++LR L  LE  +I+     L     + + ++ S  +Q   I+ 
Sbjct: 418 MELLGIDEAQAQAILNMQLRRLAALERQKIQDRHAELQRLIAEYEEIIASEARQRGIISE 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+ E +        RRT        D     + +I ++ + V I+  G+++  ++  
Sbjct: 478 ELAEIVERYGD-----DRRTEVL--YGFDGDVSMEDLIPQQQVVVTITRDGYVKRTRADE 530

Query: 538 V--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE- 588
                     +     +  D ++     +T + IL  +T G+ Y + A   +      + 
Sbjct: 531 YRAQHRGGRGIKGAQLRGDDVVEHFFVTNTHNWILFFTTLGRVYRVKAYEFVEAGRDAKG 590

Query: 589 -AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             +  L++    + I        Y     L++ +  G       ++   N   G   + +
Sbjct: 591 QHVANLMEFQPEERIAKVMELHSYQDAPYLVLATRNGLVKKSRLTDYDTNRSAGVIAINL 650

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
             ++++   + V   D + ++  + + L F+ D   +  M R   GV    ++ G    +
Sbjct: 651 RDDDELVSAMLVDTDDDIMLISRHGQSLRFTADDDALRPMGRATSGVTGMKFRSGDEL-L 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
               + +           Y +        +  RGG+G  V K   
Sbjct: 710 SANVVSDDSHVFVVTEGGYAKRTAVQEYRVQGRGGLGIKVAKLAE 754



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 25/221 (11%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDR 562
            ++    +  P  V+ +  G ++  +    D +        + ++ D L  A+   T D 
Sbjct: 608 VMELHSYQDAPYLVLATRNGLVKKSRLTDYDTNRSAGVIAINLRDDDELVSAMLVDTDDD 667

Query: 563 ILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           I+L+S  G++    A +      G   +    +      ++++A V      + VV+  G
Sbjct: 668 IMLISRHGQSLRFTADDDALRPMGRATSGVTGMKFRSGDELLSANVVSDDSHVFVVTEGG 727

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-----TGDHVAVVGENRKLLIFSID 676
            A      E     R G   +KV+   +++  +         D V VV E+ K++  ++ 
Sbjct: 728 YAKRTAVQEYRVQGRGGLG-IKVAKLAEVRGGLVGGLIVGENDEVLVVMESGKVVRSTVS 786

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           ++P   R                VI  K     T +  A  
Sbjct: 787 EVPARGR------------DTMGVIFAKPGPNDTIVGVARN 815


>gi|329896487|ref|ZP_08271545.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC3088]
 gi|328921704|gb|EGG29077.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC3088]
          Length = 753

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 292/759 (38%), Positives = 451/759 (59%), Gaps = 24/759 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L EE+ ++VSLR   E+ YL Y++  I +RA+P++ DG KPV RRII+AMSE+G
Sbjct: 1   MSDMPMLPEED-ESVSLRDYAEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+VIGK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   
Sbjct: 60  LKASAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSADDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T  A+ +L  + +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 120 SFAAMRYTESRLTAYADALLGELGQGTVDWVPNFDGTMDEPSVLPAQVPNVLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  A + L++ P+ ++++L E+I  PDFPT   I+  R+ I   YR
Sbjct: 180 VGMATDIPPHNLREVVSATIRLLEYPKSTLDELCEHIQAPDFPTQAEIITPRDEIKAFYR 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+V  +P+QV  ++++E+IA  + AK++PL+ D+RDE
Sbjct: 240 SGRGSIKMRAHWRKED-----GAIIVDALPHQVSGAKVLEQIAAQMQAKKLPLVNDLRDE 294

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ PK+  +D D LM  +F  +D+E  + +N+N++     P V  LD IL+
Sbjct: 295 SDHENPTRLVIVPKSNRVDIDALMLHLFATTDLERSYRINLNLIGNNGRPGVKSLDAILR 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R E + RR  +R++ + +R+ +L+G LIAYLNIDE+I IIR EDKPKPV++ RF 
Sbjct: 355 EWLEFRTETVRRRLQYRLEKVLKRLHLLEGYLIAYLNIDEVIHIIRTEDKPKPVLMQRFG 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +A+L L+LR+L KLEE +I+ E D L  E+E+++  L S  +    I  E+  V
Sbjct: 415 LSDAQAEAVLELKLRNLAKLEEMKIRGEQDELEKEREQLELTLGSTARMRTLIKKELLAV 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E F         R++        KA  ++ ++  EPITVV+S +GWIR+ K H +D ++
Sbjct: 475 AEQFGDE------RSSPLVAREEAKAFSEKELMSTEPITVVLSEKGWIRAAKGHDIDPTS 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+  +A    +    +L+ + G+AYTLP  NL S RG GE +   I        
Sbjct: 529 LSYKAGDNFNLAAAGRSNQSAILIDSTGRAYTLPTHNLPSARGQGEPVTGRISPPPGVGF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDH- 660
               + D   K+L+ S  G  F+ E   ++A  + GK  L + +  ++    +V  GD  
Sbjct: 589 KALLLGDERQKILLASDAGYGFVTELGHLMAKNKAGKAILNLPNGSEVLPPAQVPPGDDL 648

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI------SDVICFKICEGLTWID 713
            VA V    +LL+F +  +PE++RGKG ++ S     +         I     E    + 
Sbjct: 649 LVAAVSTEGRLLVFPLADLPELARGKGNKILSVPSARVKSREEMVKGIAVLTQESRLVLH 708

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  R      ++L  + G+RG  GS +P+G       ++
Sbjct: 709 AGKRHLTLKVSELDHYRGERGRRGSKLPRGLQNVDYLVA 747


>gi|149909420|ref|ZP_01898075.1| DNA topoisomerase IV, A subunit [Moritella sp. PE36]
 gi|149807530|gb|EDM67479.1| DNA topoisomerase IV, A subunit [Moritella sp. PE36]
          Length = 751

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 272/757 (35%), Positives = 425/757 (56%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++   +  E V+   LR   E+ YL Y++  I +RA+P + DG KPV RRI +AMSE+G
Sbjct: 1   MTDVIDMSLEGVEEQPLREFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRITYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L  GA +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LHAGAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA++++ AE++L  V    VD+   ++    EP + P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEAKLSKFAEVLLGEVGLGTVDWSPNFDGTMKEPQLLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A L LIDNP+  + +L+ Y+ GPD+PT   I+   + I + Y 
Sbjct: 181 VGMATDIPPHNVREVTNACLHLIDNPKAELSELMAYVKGPDYPTEAEIITPEKDIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  ++RA + +E        IV++ +P+QV   +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGKGSIKMRAVFTIESGD-----IVISALPHQVSGGKILEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  F +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVIIPRSNRIDIEQLMAHLFASTDLEKNFRVNLNMIGLNEKPQVKGLKKILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +  R+ +L GLLIA+LNIDE+I IIRN D PK  ++SRF 
Sbjct: 356 EWLVFRHSTVRRRLQFRLDKVLSRLHMLDGLLIAFLNIDEVIDIIRNYDDPKAELISRFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q +A+L L+LR L KLEE +I+ E   L  E+ K++ LL+S ++    +  E+   
Sbjct: 416 LSVKQAEAVLELKLRHLAKLEEMRIRGEQGELNTERHKLEQLLSSDRRLATLVKKELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E F        RR+   E   A   T ++ M   E +TVV+S +GW R  K H VD   
Sbjct: 476 AEKFGDE-----RRSPIIERKEAKALTEKELM-PNEAVTVVLSQQGWARCAKGHDVDAKG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K  D  K A    +    + + + G+++ L A  L S R  GE +     L   +  
Sbjct: 530 LSYKASDGYKDAAEGRSNCPAVFIDSSGRSFALDAHTLPSARSQGEPLTTRFTLAAGKTF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
           V A + D + + L+ S  G  FI + S++I+  + GK  L + +   +     VT    D
Sbjct: 590 VHALMADDSQQYLLSSDAGYGFIGKFSDMISRNKNGKALLTLPAAGLVIEPQAVTDIATD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI------SDVICFKICEGLTWID 713
           H  ++    ++LIF +  +P +S+GKG +L +     +        ++          + 
Sbjct: 650 HCLIISNEGRMLIFPLSSLPLLSKGKGNKLMNIPSARVKSREEFVQMLTIVPEGQSVTLY 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R       DL  + G+RG  G  +P+G  R    
Sbjct: 710 AGKRKLTLKPADLEHYKGERGRRGFKLPRGLQRVDTL 746


>gi|197334816|ref|YP_002157022.1| DNA topoisomerase IV, A subunit [Vibrio fischeri MJ11]
 gi|197316306|gb|ACH65753.1| DNA topoisomerase IV, A subunit [Vibrio fischeri MJ11]
          Length = 758

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 271/754 (35%), Positives = 440/754 (58%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  E V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+++++ A+++L  + +  VD++  ++    EP + PS+ P++L NG +GIAVGM
Sbjct: 122 AMRYTESKLSKFADVLLGEIGQGTVDWQPNFDGTMKEPTILPSRLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  A + L++NP+  ++++++++ GPD+PT   I+     I + YR GR
Sbjct: 182 ATDIPPHNVREVANATVHLLENPKADLDEVMDFVKGPDYPTKAEIISPSSEIKKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV+T +P+QV  S+L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEEGD-----IVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D + LM  +F  +D+E  + +N+N++ + + PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDAEPLMNHLFASTDLEKSYRVNLNMIGLDQRPQVKGLVSILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + +R   R+  +  R+ IL+GLL AYLNIDE+I IIR ED PK  +++RF L+E
Sbjct: 357 EFRRTTVRKRLQHRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDDPKHELMTRFDLSE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L KLEE +I+ E D L  E++ ++ LL S ++    I  EI    E 
Sbjct: 417 KQAEAILEIKLRQLAKLEEIKIRGEQDELAKERDYLEKLLGSERRLNTLIKKEILADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E + A KA  ++ +I  E ITVV+S++GWIR  K H VD + L++
Sbjct: 477 FGD-----DRRSPLVERAEA-KAMTERDLIPSEAITVVLSDKGWIRHAKGHDVDPTTLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +    + + ++G++Y L +  L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSNAPAVFMGSNGRSYALESHTLPSARSQGEPITGRLNITAGSQITHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     L+ S  G  F+ + +++++  + GK  L +    ++     V+    D + 
Sbjct: 591 VMGEEEQTWLISSDAGYGFVCKGADLLSKNKNGKALLTLPENSQVMNPEAVSDLESDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++ +GKG ++ +                  + +G T  + +  
Sbjct: 651 AITNEGRMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSHLLPLPQGATITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  GSL+P+G  R  + 
Sbjct: 711 RKLGLKPTDLDNFRGERGRRGSLLPRGLQRVTRI 744


>gi|59712834|ref|YP_205610.1| DNA topoisomerase IV subunit A [Vibrio fischeri ES114]
 gi|59480935|gb|AAW86722.1| DNA topoisomerase IV, subunit A [Vibrio fischeri ES114]
          Length = 758

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 271/754 (35%), Positives = 440/754 (58%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  E V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+++++ A+++L  + +  VD++  ++    EP + PS+ P++L NG +GIAVGM
Sbjct: 122 AMRYTESKLSKFADVLLGEIGQGTVDWQPNFDGTMKEPTILPSRLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  A + L++NP+  ++++++++ GPD+PT   I+     I + YR GR
Sbjct: 182 ATDIPPHNVREVANATVHLLENPKADLDEVMDFVKGPDYPTKAEIISPSSEIKKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV+T +P+QV  S+L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEEGD-----IVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D + LM  +F  +D+E  + +N+N++ + + PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDAEPLMNHLFASTDLEKSYRVNLNMIGLDQRPQVKGLVSILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + +R   R+  +  R+ IL+GLL AYLNIDE+I IIR ED PK  +++RF L+E
Sbjct: 357 EFRRTTVRKRLQHRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDDPKHELMTRFDLSE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L KLEE +I+ E D L  E++ ++ LL S ++    I  EI    E 
Sbjct: 417 KQAEAILEIKLRQLAKLEEIKIRGEQDELAKERDYLEKLLGSERRLNTLIKKEILADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E + A KA  ++ +I  E ITVV+S++GWIR  K H VD + L++
Sbjct: 477 FGD-----DRRSPLVERAEA-KAMTERDLIPSEAITVVLSDKGWIRHAKGHDVDPTTLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +    + + ++G++Y L +  L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSNAPAVFMGSNGRSYALESHTLPSARSQGEPITGRLNITAGSQITHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     L+ S  G  F+ + +++++  + GK  L +    ++     V+    D + 
Sbjct: 591 VMGEEEQTWLISSDAGYGFVCKGADLLSKNKNGKALLTLPENSQVMNPEAVSDLESDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++ +GKG ++ +                  + +G T  + +  
Sbjct: 651 AITNEGRMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSHLLPLPQGATITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  GSL+P+G  R  + 
Sbjct: 711 RKLGLKPTDLDNFRGERGRRGSLLPRGLQRVTRI 744


>gi|17228355|ref|NP_484903.1| DNA gyrase subunit A [Nostoc sp. PCC 7120]
 gi|17130205|dbj|BAB72817.1| DNA gyrase A subunit [Nostoc sp. PCC 7120]
          Length = 872

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 242/800 (30%), Positives = 375/800 (46%), Gaps = 66/800 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTSQERIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL++G GNFG++D D  AA R
Sbjct: 62  PFKKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +    +LQ ++ + VDF D ++    EP V PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +A+I NPEI+  +L++YI GPDFPTG  I+    +I E+Y  GRG 
Sbjct: 182 NIPPHNLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQIL-GVGAIKEAYTTGRGS 240

Query: 250 FRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I++TE+PYQ  K+ LIEKIAEL+  KRI  + DIRDES
Sbjct: 241 ITMRGVANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNDKRIEGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R   P +++ +++  + ++  F  NM  L     PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALV-NGEPQILNLKQFLNVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  ++D II +IR            ++ + 
Sbjct: 360 DFRIESITRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRGASDTPTAKGELITTYM 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E ++L  +   +  +L   ++    I  EI ++
Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIADLQDILARRERILEIIETEITQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K  F+                R   A  +  ++  +   +         +    +   +A
Sbjct: 480 KTSFATPRRTVITHAEGEIDERDLIANEKAIILLTQQGYIKRMPVNTFEAQSRATRGKAA 539

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
              K+ D+++  L     D +L  S  G  Y L A  +   S    G  I  L+ +   +
Sbjct: 540 AKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPLGSRTSRGTPIVQLLPIPKEE 599

Query: 601 DIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I +    D       L++++  GN    E +        G   + +   ++++ V +  
Sbjct: 600 KITSIVPVDEFTSEEYLVMLTKGGNIKKTELAAFSNIRANGLIAISLEEGDQLRWVRRAR 659

Query: 658 -GDHVAVVGENRKLLIFSI--DQIPEMSRG-KGVRLQSYKDGGISDVICFKIC------- 706
             D + V       + F    +Q+  + R  +GV+    K G     +            
Sbjct: 660 VEDSIIVGSRLGMAIHFRCTHEQLRPLGRATRGVKSMKLKKGDELVGMDILPAAILDTLN 719

Query: 707 ---------------------------EGLT-------------WIDSAGRSYNRSENDL 726
                                      E L               +      Y +     
Sbjct: 720 TEEPDIDDIETEDIETAVETTEVLETLENLEAVEVSSTASVGPWVLVITMGGYGKRVPVS 779

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              L  R G G +  K   R
Sbjct: 780 QFRLQNRAGQGLMATKFKNR 799



 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKV-----SSEEKMKLVVKVTGD-HVAVVGEN 667
           +LV++  G    V  S+     R G+  +        +++K+  +  V  D  + +V   
Sbjct: 764 VLVITMGGYGKRVPVSQFRLQNRAGQGLMATKFKNRKTKDKLATLGIVNSDNEIMMVTNR 823

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             ++  +++ I   SR   GVR+Q   +      +     +
Sbjct: 824 GIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGVAIVPPD 864


>gi|183602674|ref|ZP_02964038.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682505|ref|YP_002468888.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190072|ref|YP_002967466.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195478|ref|YP_002969033.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218092|gb|EDT88739.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620155|gb|ACL28312.1| DNA gyrase, A subunit [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248464|gb|ACS45404.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250032|gb|ACS46971.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177775|gb|ADC85021.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793059|gb|ADG32594.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis V9]
          Length = 920

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 222/771 (28%), Positives = 375/771 (48%), Gaps = 27/771 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++   +V + V+ + L+  + + YL+YALS I ERA+PD+RDG KPVHRR+++AM + G 
Sbjct: 40  TDYGLMVGQRVQPIDLQDEMRQSYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGY 99

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D A
Sbjct: 100 RPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYLLVDGQGNFGSPGDDPA 159

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVG
Sbjct: 160 AAMRYTECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVG 219

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ +     +D+PE S E+    L+E I GPDFPTG  I+   + I ++
Sbjct: 220 MATNIPPHNMREVADGVHWALDHPEASREELLDALIERIKGPDFPTGATIL-GHKGIEQA 278

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+R
Sbjct: 279 YRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLVASIREAVRDGKITGIADMR 337

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  +
Sbjct: 338 DETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFI 396

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMV 418
           + W++H+ +V+ RR+++  +  + R  IL+G L A   IDE+I +IR+       +  ++
Sbjct: 397 RHWVSHQLDVIARRTAYLKREAEERDHILQGYLKALDMIDEVIHLIRSSQTVEIARTGLM 456

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + + Q DAIL ++LR L  LE  +I  E D L+        +L   ++Q   +  E
Sbjct: 457 DLLGVDDVQADAILAMQLRRLAALERQKILDEHDELMRRIADYADILAKPERQRKIVGDE 516

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+   +           +         A     +       +  +     R+      
Sbjct: 517 LDEIVARYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHAGFIKRTKADEYRAQHRGGK 576

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     ++ D +       T + +L  +  G+ Y   A  L  G    +   +  L+  
Sbjct: 577 GIKGAKLRDDDVVDHFFLTSTHNWLLFFTNKGRVYRCKAYELPEGSRDSKGQHVANLLQF 636

Query: 597 NHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I T            L++ +  G       SE  +  + G   +++  +      
Sbjct: 637 TPDESIQTVLSIPDYEVADYLVLATRSGKVKKTRLSEYDSPRQGGLIAVRLMQDESGETA 696

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICF 703
           +++         D + +V +    L F  D   +  M R   GV+   ++ G     +  
Sbjct: 697 DELIGAALCNATDDIILVSKLGMSLKFRADDEQLRPMGRQTAGVQGMKFRAGDELLAMDV 756

Query: 704 KICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              E     +    + + +        L  R G G    +     G  + +
Sbjct: 757 IWGETDKDLLVVTNQGFAKRTAISEYRLQGRNGFGVKAVQLTDERGTLVGA 807


>gi|270263145|ref|ZP_06191415.1| DNA topoisomerase 4 subunit A [Serratia odorifera 4Rx13]
 gi|270042833|gb|EFA15927.1| DNA topoisomerase 4 subunit A [Serratia odorifera 4Rx13]
          Length = 757

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 281/756 (37%), Positives = 448/756 (59%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSD---LTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLAELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +ALID P   +E+LLE++ GPDFPT   I+  R+ I + Y+
Sbjct: 178 VGMATDIPPHNVREVAAAVVALIDKPGAGLEELLEFVQGPDFPTEAEIITPRDEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 NGRGSVRMRAIWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D +M  +F  +D+E  + +NMN++ +   PQV  L  IL 
Sbjct: 293 SDHENPTRLVIVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDNRPQVKGLVEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++ RF 
Sbjct: 353 EWLAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMQRFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +++ Q +AIL L+LR L KLEE++I+ E D L  E++ + +LL S ++    I  EI+  
Sbjct: 413 ISDTQAEAILELKLRHLAKLEEFKIRGEQDELAKERDHLQALLASERKLNTLIKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E + A KA  +   +  EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AQAYGD-----DRRSPITERAEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    T   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LSYKAGDSYRSAARGKTNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S  G  F+   ++++A  R GK  + +    K    +++ GD   
Sbjct: 587 EQVLMAADDQKLLMASDAGYGFVCTFNDLVARNRAGKAMITLPDNAKALAPMEIHGDDDM 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDS 714
           +  +    ++L+F +  +P++S+GKG ++ S      +        +     +    +  
Sbjct: 647 LLSITAAGRMLLFPVADLPQLSKGKGNKIVSIPAAQAASGEDKLTWLFVLPPQTSVTLHV 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  G+ +P+G  R  + 
Sbjct: 707 GKRKLTLRPEDLQKFRAERGRKGTSLPRGLQRIDRV 742


>gi|229817002|ref|ZP_04447284.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM
           20098]
 gi|229785747|gb|EEP21861.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM
           20098]
          Length = 907

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 231/779 (29%), Positives = 393/779 (50%), Gaps = 43/779 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++   +V E ++   L+  + E YLAYA+S I +RA+PD+RDG KPVHRR+++AM + G 
Sbjct: 44  TDYGLMVGERIQVRDLQTEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVVYAMYDGGY 103

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D A
Sbjct: 104 RPDRGYSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPA 163

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVG
Sbjct: 164 AAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVG 223

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ E     +D+PE S E+    L+  I GPDFPTG  I+   + I ++
Sbjct: 224 MATNIPPHNMREVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATIL-GHKGIEQA 282

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+R
Sbjct: 283 YRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLVASIREAVRDGKIQGIADMR 341

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  +
Sbjct: 342 DETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFI 400

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMV 418
           + W+ H+ +V+ RR+++  +  + R  IL+GLL A   I+E+I +IR+       +P ++
Sbjct: 401 RHWINHQIDVVARRTAYLKREAEERDHILQGLLKALDAIEEVIKLIRSSQGREDARPKLM 460

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + + Q DAIL+++L  L  +E  +I  E + L+ +    + +L   ++Q   +  E
Sbjct: 461 EFLDIDQVQADAILSMQLVRLANMEAQKIVDEHNELMRKIADYNDILAKPERQRRIVGDE 520

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+   +        RRT     S        + +I +E + V +++ G+I+  K+   
Sbjct: 521 LDEIVAKYGDE-----RRTKILPYSGEMN---VEDLIPEENVVVTVTHSGFIKRTKADEY 572

Query: 539 --------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
                    +     +E D +       T + +L  +  G+ Y L A  L  G    +  
Sbjct: 573 RAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQ 632

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            +  L+    ++ I T      Y+    L++ +  G       +E  +  + G   +++ 
Sbjct: 633 HVANLLQFGPDETIQTVLSIPNYEVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLM 692

Query: 646 SE------EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDG 695
           ++      +++         D + +V      L F+ +   +  M R   GV+   ++DG
Sbjct: 693 TDENGENADELIGAALCNADDDIMLVSRKGMSLKFTANDEQLRPMGRQTAGVQGMKFRDG 752

Query: 696 GISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +     +     +      + +        L  R G G    +     G  + +
Sbjct: 753 DELLAMDVVWGDSDKDLLVVTDEGFAKRSAVSEYRLQGRNGYGVKALQLAEGRGSLVGA 811


>gi|28564560|dbj|BAC57594.1| DNA gyrase A [Campylobacter jejuni]
          Length = 844

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 245/786 (31%), Positives = 398/786 (50%), Gaps = 50/786 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SE  V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  + E       IV+ E+PYQ  K+RLI +IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKPHI-EKKTNKDVIVIDELPYQTNKARLIGQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPR 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                                  +       +           K       A+   + D 
Sbjct: 485 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV- 607
           ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+L   + I+     
Sbjct: 545 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPT 604

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHV-- 661
             +D +  L   +  G       SE       G   + +   +++   + V    D +  
Sbjct: 605 TDFDESKSLCFFTKNGIVKCTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFA 664

Query: 662 ---------------------------------AVVGENRKLLIFSIDQIPEMSR-GKGV 687
                                              V +    + F + ++ E+ R  +GV
Sbjct: 665 TGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGV 724

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +K+     V    I  +    +  + +   +  N     L  RGG G +  K   +
Sbjct: 725 TAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 784

Query: 747 SGKFLS 752
           +   +S
Sbjct: 785 TKDLIS 790


>gi|116252153|ref|YP_767991.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256801|emb|CAK07891.1| putative DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 945

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 244/841 (29%), Positives = 400/841 (47%), Gaps = 115/841 (13%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALID+P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R   
Sbjct: 196 SEVIDGCVALIDDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  ++  + ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+
Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------------------ 412
            F ++    R  +L GL IA  NIDE+I +IR                            
Sbjct: 374 KFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433

Query: 413 -----PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                 +      ++L+E Q  AIL LRL  L  L   +I  EL+ +  E +    +L+S
Sbjct: 434 IDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   +          + +I +E + V +S+ 
Sbjct: 494 RVRIQTIVKDELIAVRDEFGTP-----RRTEIVDGGLEMD---DEDLIAREDMVVTVSHL 545

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  ++ D +      +T   +L  S+ G  Y      
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L   +    G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 606 LPIGTPTSRGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRNKLSDF 665

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + FS+D +     R   GV
Sbjct: 666 VQVNRNGKIAMKLEEEGDEILSVETCTEDDDVLLTTALGQCIRFSVDDVRVFAGRNSIGV 725

Query: 688 RLQSYKDGGISDVICFK---------------------------------ICEGLT---- 710
           R  +  D      +                                    + E +T    
Sbjct: 726 RGINLGDSDRIISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEVTEEGQ 785

Query: 711 ---------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLS 752
                           +  + + + +  +     +  RGG G        ++   G+ ++
Sbjct: 786 LSDERYDELRAREQFVLTVSQKGFGKRSSSYDFRISGRGGKGIRATDTS-KTGEIGELVA 844

Query: 753 S 753
           +
Sbjct: 845 A 845



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        +   + R GK        K     ++     V  GD + +V
Sbjct: 798 EQFVLTVSQKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDV 700
            +  +L+   +  I   SR  KGV + S  KD  +  V
Sbjct: 858 SDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSV 895


>gi|260654340|ref|ZP_05859830.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1]
 gi|260630973|gb|EEX49167.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1]
          Length = 836

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 228/759 (30%), Positives = 376/759 (49%), Gaps = 15/759 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  +   +   V    L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM  +G
Sbjct: 1   MIETPDNL-GRVTVHPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMGLG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSAR+VGE +GK HPHGD ++Y+++VRLAQ +  RYPL+ GQGNFG+IDGDS
Sbjct: 60  IKHNQPYKKSARVVGETMGKYHPHGDSAIYETMVRLAQEWSMRYPLVDGQGNFGSIDGDS 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR  +  EL+L  +DED VD+   ++E   EP+  PS  PNLL NG++GIAV
Sbjct: 120 AAAMRYTEARFAETGELMLADIDEDTVDWGPNFDESLKEPLTLPSALPNLLINGSTGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ E+ +A   LI  P+  ++ L+  + GPDFPTGG I+  RE I+++YR 
Sbjct: 180 GMATNMAPHNLGEVVDALRLLIRRPDAELDDLMSCLPGPDFPTGG-IIMGREGILDAYRT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R +  VE+  R    +V+TEIPY + K+ LIE I + +  K+I  + DIRDES
Sbjct: 239 GRGKIILRGKCHVEQKSRSKTNVVITEIPYMINKTTLIESIVKGVQGKQIDGVSDIRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  D +L+   ++  + +++ F +    L   + P  + L  +L+ +L
Sbjct: 299 DRKGLRLVVELTREADAELVQRQLYSRTSLQSTFGIINLALVDNK-PVELNLKQLLETFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--- 422
            +RR V+ RR+ FR+   + R  I++GL  A   ID++IAIIR                 
Sbjct: 358 NYRRSVVRRRTQFRLDKAEARRHIVEGLCKALDVIDQVIAIIRGAQTADDAKAGLIGELA 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T+ Q  AIL++RL+ L  LE  ++ +EL  LLA+ E+  S+L++       I  E+ E+
Sbjct: 418 FTDLQAQAILDMRLQRLTGLEREKLLAELAQLLADIERYRSILDNPSVLDGVINDELGEL 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK--EPITVVISNRGWIRSLKSHSVDL 540
           +  F+             E    +    ++ ++    +   +  S               
Sbjct: 478 RRKFADERRTELSAALPTEGDSLEDLLPEEDILVTLSKDGFLRRSPLENYNLQNRGGKGR 537

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG-HGEAIQLLIDLNHN 599
                K+ D +       T   I L ++ G+ + +    +   +   G A+   + L  +
Sbjct: 538 LGAVLKDDDEVGQMAVTSTHSDIFLFTSRGRVFAIRGHMIPETKTGKGRAVSKFVSLTDD 597

Query: 600 QDIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + +V         +T  LL ++ +G    ++  E+   TR G+  L +   +++  ++  
Sbjct: 598 ERVVAMRGTLEETATSHLLFITKRGIGKRMDAEELENLTRAGRRVLSLDDGDEIAAIIDT 657

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            G+  V +V    K       +   M R  +GV+           +  + +      +  
Sbjct: 658 DGNSKVLLVTSKAKAAHVDESEFRPMGRAARGVKAMKLAPDDRI-IAAWTVAPDENLLLV 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +     +        +  RG  G        R+G+  ++
Sbjct: 717 SETGIGKRTKPEEFPIHHRGSGGVQAMHLGARTGRLAAA 755



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 6/173 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
               L   +GD +   +      ++LL+++  KA  +              +   + L  
Sbjct: 639 GRRVLSLDDGDEIAAIIDTDGNSKVLLVTSKAKAAHVDESEFRPMGRAARGV-KAMKLAP 697

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV--SSEEKMKLVV 654
           +  I+ A+       LL+VS  G     +  E   + R   G   + +   +      V 
Sbjct: 698 DDRIIAAWTVAPDENLLLVSETGIGKRTKPEEFPIHHRGSGGVQAMHLGARTGRLAAAVG 757

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + D V ++ E  +++  S   IP +SR   G  +    DG +   +     
Sbjct: 758 VASSDEVGLMTEKGRMIRLSASDIPLLSRTATGSIVLRLNDGDLLASVSVIPA 810


>gi|121729937|ref|ZP_01682359.1| topoisomerase IV, subunit A [Vibrio cholerae V52]
 gi|121628325|gb|EAX60832.1| topoisomerase IV, subunit A [Vibrio cholerae V52]
          Length = 761

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 284/751 (37%), Positives = 444/751 (59%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ EA + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVAEATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ +L+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|330960107|gb|EGH60367.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 751

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 266/758 (35%), Positives = 439/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLKFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LTEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSEAKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++PA  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIAQGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 709 QAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|145297605|ref|YP_001140446.1| DNA topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850377|gb|ABO88698.1| topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 764

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 273/757 (36%), Positives = 436/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+   +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +EL+L  + +  VD+   ++    EPVV P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSRFSELLLSELGQGTVDWTPNFDGTMKEPVVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A   L+DNP   ++ L+ +I GPD+PT   I+  R+ I + Y 
Sbjct: 181 VGMATDIPPHNAREVAYACAELLDNPNAGLDALMAHIQGPDYPTSAEIITPRDDIRKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA W  E+       IV+T +P+Q   ++++E+IA  ++AK++P++ D+RDE
Sbjct: 241 TGKGSIKQRAVWNEEDGD-----IVITALPHQASGAKIMEQIAAQMVAKKLPMVTDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVIIPRSNRVDMEALMAHLFATTDLEKNYRVNLNILGLDNRPQVKTLKMILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  RRE + RR  +R+  +  R+ IL+GLL+AYLNIDE+I IIR ED+P  VMV RF+
Sbjct: 356 EWIIFRRETVRRRLQYRLDKVLARLHILEGLLVAYLNIDEVIEIIRTEDEPGKVMVERFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE+++++E D L  E++K++ LL S ++    +  E+   
Sbjct: 416 ISETQAEAILELKLRHLAKLEEFKLRAEQDELAIERDKLELLLGSERRLNTLLKKELLAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RRT   E + A   T ++     EP+TV++S++GW+R+ K H VD++ 
Sbjct: 476 AEKYGD-----DRRTPLVERASAVALTEKEL-TPSEPVTVILSDKGWVRAAKGHDVDVAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD         +  + + LST G+ Y L A  L S R  GE +     L   +++
Sbjct: 530 LSYKAGDGYLAHACGRSNQQAVFLSTLGRTYALEAHTLPSARSQGEPLTGRFALGAGEEV 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + +     L+ S  G  F+    ++I   + GK  L V     +    K+     D
Sbjct: 590 RHLVMGNEGEPYLICSDAGYGFVCTYDDLIGKNKNGKALLTVPEGGLVMAPQKIGSPETD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-ID 713
               +    ++L+F ++ +P + +GKG +L S     +       V+   I +G    + 
Sbjct: 650 LCMAISNEGRMLLFPLNTLPVLGKGKGNKLISIPSARVKAREEFMVMAAIIPQGQYVTLF 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R       DL  + G+RG  G+ +P+G  R  + 
Sbjct: 710 AGKRKLTLKPADLDYYRGERGRRGAKLPRGLQRVDRI 746


>gi|70734052|ref|YP_257692.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens Pf-5]
 gi|68348351|gb|AAY95957.1| DNA topoisomerase IV, A subunit [Pseudomonas fluorescens Pf-5]
          Length = 752

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 267/757 (35%), Positives = 440/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP+V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLQEPLVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IIVTALPHQVSGAKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTELESTYRVNINIIGLDGKPQLKNLRALLV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L GLLIAYLN+DE+I IIR E+ P+  ++ RF+
Sbjct: 356 EWLEFRVTTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPRAKLIERFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE ++++E D LL E+ K+ +LLNS  +    +  E+ + 
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRAEQDELLKEQAKLQALLNSEAKLKKLVRTELLQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+T+V+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTIVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGYKTAAPGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +  K+     V     +
Sbjct: 590 ECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVLAPRPVADREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F I  +P++ +GKG ++       ++        I          + 
Sbjct: 650 WLASVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDIAVLPDGATLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+ +   +DL  + G+RG  G+ +P+GF R    
Sbjct: 710 AGKRTLSLKADDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|88859083|ref|ZP_01133724.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas tunicata D2]
 gi|88819309|gb|EAR29123.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas tunicata D2]
          Length = 768

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 273/757 (36%), Positives = 444/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  + ++ +S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDLEALSLQGIEQLSMGRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSSAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++LQ + +   D+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFAEVLLQELGQGTCDWTPNFDGTMDEPLVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DNP+  +E+LLE++  PD+PT   I+  R  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACSLLLDNPKAELEELLEHVQAPDYPTEAEIITPRSEIQKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  ++RA +  E+       IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGKGSIKMRAIYTEEQGD-----IVITALPHQCSGGKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIIPRSNRIKVEPLMAHLFATTDLEKSYRVNLNMLGLNGRPQVKDLKTILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR  +R+  I  R+ IL+GLL A+LNIDE+I IIR+EDKPKPV++ RF 
Sbjct: 356 EWLIFRRETVRRRLQYRLDKILARLHILEGLLAAFLNIDEVIEIIRSEDKPKPVLMERFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +T+ Q +AIL L+LR L KLEE++I+ E D L  E++K++  L S ++    I  EI+E 
Sbjct: 416 ITDIQAEAILELKLRHLAKLEEFKIRGEQDELSQERDKLELTLGSERRMSTLIKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E + A KA  ++ +I  E +TVV+S +GW R  K H +D +A
Sbjct: 476 AELYGD-----DRRSPVIERAEA-KALSEKDLIPSEAVTVVLSEKGWARCAKGHDIDAAA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++ GD  K      +   ++ L + G+A+   A +L + R  GE +    +++   + 
Sbjct: 530 LSYRAGDEFKALAKGRSNQPVVFLDSSGRAFCTDAHSLPTARSQGEPMTGRFNMSTGVNF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     L+ S  G  F+   +++++  + GK  + +S+  ++   +KV     D
Sbjct: 590 EHVVMGELDAMFLMASDAGYGFVASFADLVSKNKNGKALVSLSTGAQLISPIKVNDITTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
           +   +    ++L+F +  +P++ +GKG ++ S              VI     E    + 
Sbjct: 650 NCLAISNEGRMLMFPLRDLPKLGKGKGNKIISIPSARAKTREEFVSVIAVVPKESAVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R       DL  +LG+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKAADLEHYLGERGRRGNKLPRGLQRVDAI 746


>gi|330963726|gb|EGH63986.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 751

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/758 (34%), Positives = 436/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVARACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L +    K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVITQGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 709 QAGKRTLSLRPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|315127625|ref|YP_004069628.1| DNA topoisomerase IV subunit A [Pseudoalteromonas sp. SM9913]
 gi|315016139|gb|ADT69477.1| DNA topoisomerase IV subunit A [Pseudoalteromonas sp. SM9913]
          Length = 765

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 268/758 (35%), Positives = 446/758 (58%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++TL+ + ++  ++    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L+ + +  VD+   ++    EP+V PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPLVLPSRLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+D P+  +E+LL+ +  PD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELEELLDLVHAPDYPTDAEIITPKADIHKIYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +C E+       IV+T +P+Q   ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYCEEQGD-----IVITALPHQCSGAKVLEQIAAQMNAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIVPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRSILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR  +R+  +  R+ IL+GLL A+LNIDE+I IIR+EDKPKP+++ RF 
Sbjct: 356 EWLTFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPLLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I+ E D L  E++K++  L S ++    +  EI+E 
Sbjct: 416 LTDIQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLEQTLGSDRRMSTLLKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E   A KA  ++ +I  E +TVV+S++GW R  K H +D+  
Sbjct: 476 AEMYGD-----DRRSPVIERVEA-KALSEKDLIPSESVTVVLSDKGWARVGKGHDLDVEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD  + +    +    + L + G+A+   A +L S R  GE +    +L      
Sbjct: 530 LNYRAGDGYRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTSGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +    LL+ S  G  FI +  ++++  + GK  + V     +   ++V     D
Sbjct: 590 EHVVMGEDAQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGVLLSPIRVNDVASD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI------SDVICFKICEGLTWID 713
           +   +    ++L+F +  +P++ +GKG ++ S     +        V+          + 
Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  R      +DL  + G+RG  G+ +P+G  R  + +
Sbjct: 710 AGKRKLTLKPSDLEHYHGERGRRGNKLPRGLQRVDEAV 747


>gi|75910661|ref|YP_324957.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413]
 gi|75704386|gb|ABA24062.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413]
          Length = 872

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 241/800 (30%), Positives = 376/800 (47%), Gaps = 66/800 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTSQERIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL++G GNFG++D D  AA R
Sbjct: 62  PFKKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +    +LQ ++ + VDF D ++    EP V PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +A+I NPEI+  +L++YI GPDFPTG  I+    +I E+Y  GRG 
Sbjct: 182 NIPPHNLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQIL-GMGAIKEAYTTGRGS 240

Query: 250 FRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I++TE+PYQ  K+ LIEKIAEL+  KRI  + DIRDES
Sbjct: 241 ITMRGVANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNEKRIEGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R   P +++ +++  + ++  F  NM  L     PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALV-NGEPQILTLKQFLNVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  ++D II +IR+           ++ + 
Sbjct: 360 DFRIESITRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRSASDTPTAKGELITTYM 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E ++L  +   +  +L   ++    I  EI ++
Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIADLQDILARRERILEIIETEITQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K  F+                R   A  +  ++  +   +         +    +   +A
Sbjct: 480 KTSFATPRRTVITHAEGEIDERDLIANEKAIILLTQQGYIKRMPVNTFEAQSRATRGKAA 539

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
              K+ D+++  L     D +L  S  G  Y L A  +   S    G  I  L+ +   +
Sbjct: 540 AKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPVSSRTSRGTPIVQLLPIPKEE 599

Query: 601 DIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I +    D       L++++  GN    E +        G   + +   ++++ V +  
Sbjct: 600 KITSIVPVDEFTSEEYLVMLTKGGNIKKTELAAFSNIRANGLIAISLEEGDQLRWVRRAR 659

Query: 658 -GDHVAVVGENRKLLIFSI--DQIPEMSRG-KGVRLQSYKDGGISDVICFKIC------- 706
             D + +       + F    +Q+  + R  +GV+    K G     +            
Sbjct: 660 VEDSIIIGSRLGMAIHFRCTHEQLRPLGRATRGVKSMKLKKGDELVGMDILPAAILDTLN 719

Query: 707 ---------------------------EGLT-------------WIDSAGRSYNRSENDL 726
                                      E L               +      Y +     
Sbjct: 720 TEEPDIDDIETEDIETAVETTEVLETLENLEAVEVSSNASVGPWVLVITMGGYGKRVPVS 779

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              L  R G G +  K   R
Sbjct: 780 QFRLQNRAGQGLMATKFKNR 799



 Score = 67.5 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKV-----SSEEKMKLVVKVTGD-HVAVVGEN 667
           +LV++  G    V  S+     R G+  +        +++K+  +  V  D  + +V   
Sbjct: 764 VLVITMGGYGKRVPVSQFRLQNRAGQGLMATKFKNRKTKDKLATLGIVNSDNEIMMVTNR 823

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             ++  +++ I   SR   GVR+Q   +      +     +
Sbjct: 824 GIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGVAIVPPD 864


>gi|255326476|ref|ZP_05367558.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296]
 gi|255296516|gb|EET75851.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296]
          Length = 876

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 230/762 (30%), Positives = 374/762 (49%), Gaps = 32/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
             +++ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+I+AM + G     +F 
Sbjct: 26  HGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRSFN 85

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+G+ HPHGD ++YD+LVRL Q ++ RYPL  GQGNFG+   D AAA RYTE
Sbjct: 86  KCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRYTE 145

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            +M  +A  +++ ++ED VDF+  Y+ +  EP V P++ PNLL NG+SGIAVGMAT+IP 
Sbjct: 146 TKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNIPP 205

Query: 194 HNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           HN++E+ E     + NP  + E+    L+  I GPDFPTG  I+   + I ++YR GRG 
Sbjct: 206 HNLREVAEGVEWFLKNPHATNEELLNALMARIKGPDFPTGAQIL-GTKGIEDAYRTGRGS 264

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
             +RA   VEE+  G  C+VVTE+PYQ     L  KIAELI   ++  + D+RDE++   
Sbjct: 265 ITMRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIAELIKDGKVTGIADLRDETSGRT 323

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            + ++    R   P +++ +++  + ++  F  NM  +    VP+ + LD  ++ W+ H+
Sbjct: 324 GQRLVIVLKRDASPKVVLNNLYKHTQLQENFSANMLAIVD-GVPRTLSLDAFVRHWVDHQ 382

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTE 425
            +V+ RR+ +R++  +    IL+GLL A   +DE+IA+IR            +    + E
Sbjct: 383 MDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSGLMEFLQIDE 442

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AILN++LR L  LE  +I+   D L+    + ++++ S  +Q   I+ E+ E+   
Sbjct: 443 AQAQAILNMQLRRLAALERQKIQDRHDELMRMIAEYNAIIASETRQREIISEELGEIVNR 502

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV------ISNRGWIRSLKSHSVD 539
           +        RRT        D +       E+  +T+        +     RS       
Sbjct: 503 YGDE-----RRTQIMYGYNGDMSMEDLIPEEEVVVTITRGGYIKRTRSDQYRSQHRGGKG 557

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +     +  D ++      T   IL  +  G+ Y      L       +   I  L++  
Sbjct: 558 IKGASLRGDDVVEHFFVTTTHSWILFFTNLGRVYRAKGYELQEAGRDAKGQHIANLLEFQ 617

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I        Y+    L++ +  G       S+   N   G   + +   +++    
Sbjct: 618 GGEHIAQVMELKSYEDAEYLVLATRGGMVKKSRLSDYDTNRTAGLIAINLREGDEVVSAF 677

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            V+  D + +V  N   L F  D   +  M R   GV    +++G    +    + EG  
Sbjct: 678 TVSDKDDILLVSRNGMSLRFHADDASLRPMGRSTSGVTGMKFREGDEL-ISANVVTEGSF 736

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   Y +  +     +  R G G  V K     G  + 
Sbjct: 737 VFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVEDRGALVG 778



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 76/216 (35%), Gaps = 14/216 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTD 561
             ++    E     V+ +  G ++  +    D +        + +EGD +  A      D
Sbjct: 624 QVMELKSYEDAEYLVLATRGGMVKKSRLSDYDTNRTAGLIAINLREGDEVVSAFTVSDKD 683

Query: 562 RILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
            ILL+S +G +    A +      G   +    +      ++++A V      + VV+  
Sbjct: 684 DILLVSRNGMSLRFHADDASLRPMGRSTSGVTGMKFREGDELISANVVTEGSFVFVVTEG 743

Query: 621 GNAFIVEESEIIANTRKG--KTFLKVSSE--EKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G A      E     R G      K+  +    +  ++    D V VV  + K++  +++
Sbjct: 744 GYAKRTSVDEYRVQGRNGFGIKVAKLVEDRGALVGGLIVDEEDEVLVVMASGKVVRSNVN 803

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           ++P   R   GV     K G    +I     +    
Sbjct: 804 EVPAKGRDTMGV--IFAKPGKGDSIIGVARNQDRQL 837


>gi|194246594|ref|YP_002004233.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali]
 gi|193806951|emb|CAP18383.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali]
          Length = 838

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 229/765 (29%), Positives = 401/765 (52%), Gaps = 21/765 (2%)

Query: 6   ISNSNTLVEE------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           +S  N L++        +K +++   +++ +L+YA+S I  RA+PD++DG KPV RRI++
Sbjct: 1   MSKKNDLLKNEDSLVGKIKKININQEIKKSFLSYAMSVIVARALPDIKDGLKPVQRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            M+E+G+   +++KKSARIVG+V+GK HPHGD S+Y++++R+AQ F  RYPL+ G GN G
Sbjct: 61  GMNELGVYSHSSYKKSARIVGDVMGKFHPHGDSSIYEAMIRMAQDFNYRYPLVDGHGNLG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+AAA RYTE +M++++  +L+ +D++ VDF + Y+  + EPV  PS FPNLL NG
Sbjct: 121 SIDGDNAAAMRYTEVKMSKISMELLKEIDQETVDFVENYDGSEREPVFLPSSFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           ++GIAVGMAT+IPSHN+ E+ +A +  IDN EI  E L+++I GPDFPTGG I+     +
Sbjct: 181 STGIAVGMATNIPSHNLSEVIDALINYIDNKEIDTEGLMKFIKGPDFPTGGEIL-GISGL 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E+Y  GRG   VR++  +    +    I++ EIPYQ++K+ LIEKIA L+  K I  + 
Sbjct: 240 KEAYETGRGRIFVRSKTEIIYSDKNKPIIIIKEIPYQIKKTSLIEKIAFLVKEKIIEGIT 299

Query: 300 DIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           D+RDES       ++    + ++P +++ +++  + ++T F  NM  L    VP+++ L 
Sbjct: 300 DLRDESNNSRGMRIIIELRKDVEPKIILNNLYKHTQLQTSFCFNMIALV-NGVPKIVSLK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--- 415
            +L+E+   R +V+ R+  F +    ++  ++  L I   +I++++ II+N +  K    
Sbjct: 359 NMLEEFFLFRIDVINRQKKFELNKAKQKKHLITALAIILNDIEKVLKIIKNSNDVKEAQK 418

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++  ++  E Q  AIL + L+ +  LE  ++  E + L  +  + ++++NS  ++   +
Sbjct: 419 NIMINYNFDEIQSKAILEMSLQKITNLEIKKVIKEEEILKLKIYECENIINSQTKKEKIL 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLK 534
             E+ ++K  F            +  V        +  +I       +   N    +   
Sbjct: 479 KKELLKIKNQFQDKRKSIISNEQYLTVENESLINKETILITVTNKGYIKRLNLDTYKKQN 538

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +S L  +E D L+  L   T D  L  +  GK Y L    +  G  + +   +  
Sbjct: 539 RGGKGVSGLKMQENDFLEHILITSTHDHQLFFTNKGKIYQLKGYEIPLGSRYSKGIPLVN 598

Query: 593 LIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L+ L  N+ + +        +    L++V+ KG        +     R GK    + + +
Sbjct: 599 LLPLEKNEFLTSLTSVKDFKEEKNYLVLVTKKGLIKRNSLKDFENVRRNGKIAAVLKNND 658

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  V + TG   + +   + K + F+  +I +  R   GVR    K       +     
Sbjct: 659 EVLFVSRTTGQQDIILAASDGKAIRFNEFEIRQTGRKSSGVRGIKIKTEEEIIGMTVVDS 718

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           E    +    + Y +           RGG G+   K   R+GK +
Sbjct: 719 EKQNILVITEKGYGKITKANEYRNQIRGGKGTKTLKITSRNGKLV 763



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 74/205 (36%), Gaps = 14/205 (6%)

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILL 565
           +   E++   V+++ +G I+                A   K  D +           I+L
Sbjct: 615 KDFKEEKNYLVLVTKKGLIKRNSLKDFENVRRNGKIAAVLKNNDEVLFVSRTTGQQDIIL 674

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAF 624
            ++DGKA       +        +    I +   ++I+   V D     +LV++ KG   
Sbjct: 675 AASDGKAIRFNEFEIRQTGRKS-SGVRGIKIKTEEEIIGMTVVDSEKQNILVITEKGYGK 733

Query: 625 IVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680
           I + +E     R GK    +     + + ++L+     + + +  ++ K++     QIP 
Sbjct: 734 ITKANEYRNQIRGGKGTKTLKITSRNGKLVRLLTIYRNEELIIFSDHGKVVRIDTKQIPL 793

Query: 681 MSR--GKGVRLQSYKDGGISDVICF 703
                 +G  L S ++      +  
Sbjct: 794 TKSKVTQGNILISLEESDKVSSVAL 818


>gi|50953932|ref|YP_061220.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950414|gb|AAT88115.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 858

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 242/776 (31%), Positives = 386/776 (49%), Gaps = 37/776 (4%)

Query: 6   ISNSNTL-----VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +++         +   +  V L+  ++  YL YA+S I  RA+P++RDG KPVHRR+I+A
Sbjct: 1   MTDEENAGAVFGIHGKIDQVDLQSEMQRSYLDYAMSVIIGRALPEVRDGLKPVHRRVIYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     AF K AR+VG+V+G+ HPHGD ++YD+LVRL QP+  RYPL  GQGNFG+
Sbjct: 61  MFDGGYRPDKAFSKCARVVGDVMGQFHPHGDSAIYDALVRLVQPWSLRYPLALGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA RYTE +M  +A  +++ +DED VDF+D Y+    EP V PS+FPNLL NG+
Sbjct: 121 PGNDGAAAPRYTETKMAPLALEMVRDIDEDTVDFQDNYDGRTQEPSVLPSRFPNLLVNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN++E+ + AL  + +PE S    +E+L++ I GPDFPTG  I+   
Sbjct: 181 VGIAVGMATNIPPHNLREVAQGALWHLAHPEASREELLEELIKRIKGPDFPTGAQIL-GV 239

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I ++YR GRG   +RA   +EE+ +G  C+VVTE+PYQV    L  KIAEL+   R+ 
Sbjct: 240 KGIQDTYRTGRGSITIRAVVSIEEI-QGRVCLVVTELPYQVNPDNLAIKIAELVKDGRVG 298

Query: 297 LLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + DIRDE++    + ++    R     +++ +++  + ++  F  NM  +    VP+ +
Sbjct: 299 GIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVD-NVPRTL 357

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LDG +  W+ H+ EV+ RR+ FR++  + R  IL+G L A   +DE+IA+IR     D+
Sbjct: 358 ALDGFITAWVDHQIEVIVRRTRFRLRKAEERAHILRGYLKALDALDEVIALIRRSATVDE 417

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  + S   + + Q DAIL ++LR L  LE  +I  E D +  +  +  ++L    +Q 
Sbjct: 418 AREGLKSLLEVDDIQADAILAMQLRRLAALERQKIIDEHDEIERQITEFKAILADSARQR 477

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV------ISN 526
           + ++ E+ E+ + F        RRT        D +       E+  ITV        + 
Sbjct: 478 SIVSEELTEIVDRFGD-----DRRTEIMLGFDGDMSLEDLIPEEEMVITVTRGGYIKRTR 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
               RS       +     +  D +       T   +L  +  G+ Y   A  +      
Sbjct: 533 SDNYRSQHRGGKGVKGAQLRGEDVVDHFFVTTTHHWLLFFTKKGRVYRAKAYEVQEAGRD 592

Query: 587 GE--AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            +   +  L+ L  +++I        Y+    L++ +  G        E   N   G   
Sbjct: 593 AKGQHVANLLALQPDEEIAEILDIRDYEVAQYLVLATRDGLIKKTALREYDTNRSGGIIA 652

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGI 697
           +K+  E+++   + V  D  + +V      + F+     +  M R   GV    ++    
Sbjct: 653 IKLRDEDELVSALLVEEDSDLLLVSRKGMSIRFTATDEAMRPMGRSTSGVIGMHFRGDDS 712

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    EG          Y +        L  RGG+G  V K     G  + +
Sbjct: 713 LLDASVVSDEG-YVFVVTEGGYAKRTAADQYRLQNRGGLGIKVAKLSDDRGDLVGA 767



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 6/178 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRGHGEAIQLLIDLN 597
            + A+  ++ D L  AL       +LL+S  G +    A +  +   G   +  + +   
Sbjct: 649 GIIAIKLRDEDELVSALLVEEDSDLLLVSRKGMSIRFTATDEAMRPMGRSTSGVIGMHFR 708

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLVV 654
            +  ++ A V      + VV+  G A      +     R G      K+S +   +   +
Sbjct: 709 GDDSLLDASVVSDEGYVFVVTEGGYAKRTAADQYRLQNRGGLGIKVAKLSDDRGDLVGAL 768

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            V   D V VV  + K++  ++ ++P   R   GV    + +      +       L 
Sbjct: 769 IVEEDDEVLVVLASGKVVRSAVAEVPAKGRDTMGVVFARFAETDKIIALAKNTERNLD 826


>gi|117619627|ref|YP_858203.1| DNA topoisomerase IV subunit A [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561034|gb|ABK37982.1| DNA topoisomerase IV, A subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 764

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 271/757 (35%), Positives = 442/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+   +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +EL+L  + +  V++   ++    EPVV P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSRFSELLLSELGQGTVEWTPNFDGTMKEPVVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A + L+DNP   ++ L+ ++ GPD+PT   I+  R+ I + Y 
Sbjct: 181 VGMATDIPPHNAREVAHACVELLDNPNAGLDALMAHVQGPDYPTNAEIITPRDDIRKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA W  E+       IV+T +P+Q   ++++E+IA  ++AK++P++ D+RDE
Sbjct: 241 TGKGSIKQRAVWNEEDGD-----IVITALPHQASGAKIMEQIAAQMVAKKLPMVTDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVIVPRSNRVDVEGLMAHLFATTDLEKNYRVNLNILGLDNRPQVKDLKTILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ RRE + RR  +R+  +  R+ IL+GLLIAYLNIDE+I IIR E++P  VM+ RF+
Sbjct: 356 EWLSFRRETVRRRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEEEPGRVMMERFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE+++++E + L  E++K++ +L S ++    +  EI   
Sbjct: 416 ISEAQAEAILELKLRHLAKLEEFKLRAEQNELAEERDKLELILGSERRLSTLLKKEILAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RRT   E + A   T ++     EP+TV++S++GW+R+ K H VD+  
Sbjct: 476 AEKYGD-----DRRTPLVERATAVALTEKEL-TPSEPVTVILSDKGWVRAAKGHDVDVEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+     H  +  + + LST G+ Y+L A  L S R  GE +     L   +++
Sbjct: 530 LSYKAGDNYLAHAHGRSNQQAVFLSTLGRTYSLEAHTLPSARSQGEPLTGRFALGAGEEV 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + +     L+ S  G  F+ +  ++I   + GK  L V     +    K+     D
Sbjct: 590 RHLVMGNEGEPYLICSDAGYGFVCKYDDLIGKNKNGKALLTVPEGGLVMAPQKIGAPDTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS-----DVICFKICEGLTW-ID 713
               +    ++L+F ++ +P + +GKG +L S     +       V+   I +G +  + 
Sbjct: 650 LCMAISNEGRMLLFPLNTLPVLGKGKGNKLISIPSARVKAREEFVVMAAVIPQGQSVTLF 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R       DL  + G+RG  G+ +P+G  R  + 
Sbjct: 710 AGKRKLTLKPADLDYYRGERGRRGAKLPRGLQRVDRI 746


>gi|296127876|ref|YP_003635126.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109]
 gi|296019691|gb|ADG72927.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109]
          Length = 870

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 231/781 (29%), Positives = 387/781 (49%), Gaps = 45/781 (5%)

Query: 6   ISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++ +   +E   +  V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + 
Sbjct: 1   MTETPGEIEHGRIDQVDLQLEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDG 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      F K +R+VG+V+GK HPHGD ++YD+LVRL Q +  RYPL++GQGNFG+   D
Sbjct: 61  GYRPDRQFSKCSRVVGDVMGKYHPHGDSAIYDALVRLVQDWSLRYPLVAGQGNFGSPGDD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE +M  +A  +++ +DEDAVDF+D Y+    EP V PS+FPNLL NG++GIA
Sbjct: 121 PAAAPRYTECKMAPLAMEMVRDIDEDAVDFQDNYDGHTQEPAVLPSRFPNLLVNGSAGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN++E+       +++P+ S E+    L+  I GPDFPT   I+  R+ I 
Sbjct: 181 VGMATNIPPHNLREVAAGVQWHLEHPDASKEELLEALMARIKGPDFPTAATIL-GRKGIE 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG   +RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   R+  + D
Sbjct: 240 EAYRTGRGSITMRAVVEVEEI-QGRQCLVVTELPYQVNPDTLAKKIADLVKDNRVQGIAD 298

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           IRDE++    + ++    R     +++ +++  + ++  F  NM  L    VP+ + +D 
Sbjct: 299 IRDETSGRAGQRLVIVLKRDAVAKVVLNNLYKHTQLQDTFGANMLALVD-GVPRTLSIDA 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ++ W++H+ +V+ RR+ FR++  +  + I +G L A   +DE+IA+IR     +     
Sbjct: 358 FVRHWVSHQIDVIQRRTRFRLRKAEEDIHIYRGYLKALDALDEVIALIRRSPDAEEARNG 417

Query: 420 RF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 + E Q  AILNL+LR L  L+  +I    D L A+  +++++L S ++Q   ++
Sbjct: 418 LMELLGIDELQAQAILNLQLRRLAALQRQEIMDRHDALEADITELNAILGSPERQRTIVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  V + F        RRT              + +I +E + V I+  G+ +     
Sbjct: 478 EELATVVDKFGDE-----RRTHILPFDGE---VSIEDLIAEEDVVVTITRGGYAKRTRVD 529

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
                +     +     +E D +       T   +L  +  G+ Y   A  L       +
Sbjct: 530 AYRAQRRGGKGVRGAQLREDDLVDHFFVTTTHRWLLFFTNLGRVYRAKAYELPEAGRDAK 589

Query: 589 --AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              +  L+     + I        Y+    L++ + +G       +E  +N   G   + 
Sbjct: 590 GQHVANLLAFQPGEKIAQVLDLRDYEQAEHLVLATKRGLVKKTRLTEYDSNRSGGVIAIN 649

Query: 644 VSSE-----EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKD 694
           +  +     +++     V  D  V +V    + + F+     +  M R   GV    ++ 
Sbjct: 650 LREDEDGRPDELVAARLVDSDQDVILVSRQGQSVRFTASDEALRPMGRATSGVTGMKFR- 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSEN--DLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           G    +    + E             +             RGG+G  V      +G  + 
Sbjct: 709 GDDDLLAMDVVREDAFLFTVTEGGIAKRTALTVENYRQQGRGGLGIKVANLPEANGDLVG 768

Query: 753 S 753
           +
Sbjct: 769 A 769



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 4/140 (2%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--LPAGNLLSG 583
           +   +R +   +  ++ + F+  D L           +  ++  G A    L   N    
Sbjct: 688 SDEALRPMGRATSGVTGMKFRGDDDLLAMDVVREDAFLFTVTEGGIAKRTALTVENYRQQ 747

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTF 641
              G  I++      N D+V A V D+  ++LV+  +G       SE+ A   T +G  F
Sbjct: 748 GRGGLGIKVANLPEANGDLVGALVTDADDEVLVIMERGKIVRSATSEVNATGRTTQGVIF 807

Query: 642 LKVSSEEKMKLVVKVTGDHV 661
            K  + +++  V + +  H+
Sbjct: 808 AKPDTGDRIIAVARNSERHL 827


>gi|327193329|gb|EGE60233.1| DNA gyrase protein, A subunit [Rhizobium etli CNPAF512]
          Length = 919

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 240/834 (28%), Positives = 391/834 (46%), Gaps = 115/834 (13%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+ + A  +
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +  
Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +ALI++P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R    +E +  
Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVAAIEPMRG 240

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
               I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+    R  + +
Sbjct: 241 DREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAE 300

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  ++  + ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+ F ++  
Sbjct: 301 VILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKA 359

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDK-----------------------------PK 414
             R  +L GL IA  NIDE+I +IR                                  +
Sbjct: 360 RERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMSRRWPAEDVESLIRLIDDPRHR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                 ++L+E Q  AIL LRL  L  L   +I  EL+ +  E      +L+S  +    
Sbjct: 420 INEDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E+  V++ F        RRT   +          + +I +E + V +S+ G+I+   
Sbjct: 480 VKDELTAVRDEFGTP-----RRTEIVDGGLEMD---DEDLIAREDMVVTVSHLGYIKRVP 531

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
                  +      S +  ++ D +      +T   +L  S+ G  Y      L   +  
Sbjct: 532 LTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKG 638
             G+A+  ++ L   + I T               ++  +++G     + S+ +   R G
Sbjct: 592 SRGKALINMLPLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNG 651

Query: 639 KTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKD 694
           K  +K+    +++  V   T  D V +     + + FS+D +     R   GVR  +  +
Sbjct: 652 KIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGE 711

Query: 695 GGISDVICFK-------------------------------------------------- 704
           G     +                                                     
Sbjct: 712 GDRIISMTIVGHVDAEPWQRAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYE 771

Query: 705 --ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLSS 753
                    +  + + + +  +     +  RGG G        ++   G+ +++
Sbjct: 772 ELKAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTS-KTGEIGELVAA 824



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        +   + R GK        K     ++     V  GD + +V
Sbjct: 777 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 836

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDV 700
            +  +L+   +  I   SR  KGV + S  KD  +  V
Sbjct: 837 SDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSV 874


>gi|188580257|ref|YP_001923702.1| DNA topoisomerase IV subunit A [Methylobacterium populi BJ001]
 gi|179343755|gb|ACB79167.1| DNA topoisomerase IV, A subunit [Methylobacterium populi BJ001]
          Length = 748

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 398/736 (54%), Positives = 529/736 (71%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M  + LD  +
Sbjct: 7   PPPGDGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTS 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           AFKK A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYR
Sbjct: 67  AFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+T+VA L+L G+DED VDFR +YN E  EPVV P+ FPNLLANG+ GIAVGMATS
Sbjct: 127 YTEARLTEVARLLLDGIDEDTVDFRPSYNGEKEEPVVLPAAFPNLLANGSQGIAVGMATS 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+C+AAL LI N E + E+L  ++ GPDFPTGGI+++S + I E+YR GRGGF
Sbjct: 187 IPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSPDVIREAYRTGRGGF 246

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RVRARW  E++GRG+W IVVTEIPY V K+RLIEK+A+L+  K++PLL D+RDESAEDVR
Sbjct: 247 RVRARWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVR 306

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL P++RS+DP LLMES+F LS++E R PLN+NVL  G VP+V+ L   L+EW+ HRR 
Sbjct: 307 VVLEPRSRSVDPVLLMESLFRLSELEARVPLNLNVLVGGVVPRVIGLAECLREWVDHRRV 366

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RRSS+R+  I+RR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +A
Sbjct: 367 VLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANA 426

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+ RLRSLRKLEE ++K E + L  EKE I++LL S K QW +I  +IR VK+ F   T
Sbjct: 427 ILDTRLRSLRKLEEMELKREFEALTQEKEGIEALLGSEKLQWTEITKQIRAVKKTFGPET 486

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            LG+RRTT              AM+E+EPITV++S +GWIR+LK H  DLS + FK  D+
Sbjct: 487 KLGKRRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVADLSGVTFKGDDT 546

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           LK++  + TT +ILLL+++GK +T+ A  L  GRG G+ ++L++DL+   +IV A  Y  
Sbjct: 547 LKVSFLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKP 606

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
             KLLV  S G  FI     ++ANTRKGK  L +       L+V   GDH+AV   ++ +
Sbjct: 607 ESKLLVAGSDGRGFIAPSDALVANTRKGKAILGLDEGTSATLLVPAEGDHIAVCSSDKLM 666

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L+F   ++ E+SRGKGVRLQ  +   ++D   F + +GL W D +G++       L  ++
Sbjct: 667 LVFPASEVTELSRGKGVRLQRCRQSRLTDACVFTLADGLPWRDGSGQARLYQVAMLEKFM 726

Query: 731 GKRGGVGSLVPKGFPR 746
           G R   G+L+ + FP+
Sbjct: 727 GHRSDAGALMTRSFPK 742


>gi|320321902|gb|EFW77998.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330993|gb|EFW86967.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330872230|gb|EGH06379.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 751

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/758 (34%), Positives = 438/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE + L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIAQGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 709 QAGKRTLSLKSEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|207725376|ref|YP_002255772.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum MolK2]
 gi|206590612|emb|CAQ37574.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum MolK2]
          Length = 842

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 223/761 (29%), Positives = 361/761 (47%), Gaps = 63/761 (8%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           HRR+++AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ 
Sbjct: 2   HRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVD 61

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG++DGD+AAA RYTE R++++A  +L  +D++ VDF   Y+  ++EP + P++ P
Sbjct: 62  GQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIP 121

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
           NLL NG+SGIAVGMAT+IP HN++E+ +  L L+ NP+ ++++L+E I  PDFPT G I+
Sbjct: 122 NLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAG-II 180

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIA 292
                + E YR GRG   +RA+   E++ RG    I+V E+PYQV K  L+E+IAEL+  
Sbjct: 181 YGISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTE 240

Query: 293 KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           KR+  + DIRDES +    V+    R   P++++ +++  + ++  F +NM  L     P
Sbjct: 241 KRVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVD-GQP 299

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           +++ L  +L+ +L HRREV+ RR+ F ++    R  IL+GL +A  NIDE IAII+    
Sbjct: 300 RLLNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPT 359

Query: 413 PKPVMVSRFS--------------------------------------------LTENQV 428
           P                                                     L++ Q 
Sbjct: 360 PPIAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL +RL+ L  LE+ +I  E   ++A+   +  +L   ++    I  E+  ++  F  
Sbjct: 420 QEILQMRLQRLTGLEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                         +          +       +        R+ K       A   KE 
Sbjct: 480 ERRSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKED 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D +     A+T D IL  S  G+ Y L    +        G  I  +  L+  + I    
Sbjct: 540 DWIDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVIL 599

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VA 662
               +D    + + +SKG       +E     + G   + +   + +       G H V 
Sbjct: 600 PVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVM 659

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL---------TWI 712
           +  +  K + F  + +  M R  +GVR  + ++G     +     E           + +
Sbjct: 660 LFSDAGKAVRFDENDVRPMGRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVL 719

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    Y +           RG  G +  +   R+GK +++
Sbjct: 720 TATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAA 760



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 618 TVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L   Q ++   V  +             +L  +  G       SE  
Sbjct: 678 MGRQARGVRGM-NLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYT 736

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     + + +   +    D + ++     L+   +D+I EM R  +GV
Sbjct: 737 RHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGV 796

Query: 688 RLQSYKDG 695
            L +  +G
Sbjct: 797 TLIAVGEG 804


>gi|288573325|ref|ZP_06391682.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569066|gb|EFC90623.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 814

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 258/755 (34%), Positives = 406/755 (53%), Gaps = 27/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL    ++KKS
Sbjct: 9   KIIRHPLVEEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRILFAMQELGLRHNQSYKKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE +GK HPHGD ++YD++VRLAQ F  RY L+ GQGNFG+IDGDSAAA RYTEAR
Sbjct: 69  ARVVGETMGKYHPHGDSAIYDTMVRLAQNFSMRYTLVDGQGNFGSIDGDSAAAMRYTEAR 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++ EL+LQ +DED V++   ++E   EP+V PS+ PNLL NG++GIAVGMAT++P HN
Sbjct: 129 LQELGELMLQDIDEDTVEWGPNFDESLKEPMVLPSQVPNLLVNGSTGIAVGMATNMPPHN 188

Query: 196 VQEICEAALALIDNPEISIE-KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + E+ +A   LI+  + +   +L+  + GPDFPTGG+I+  ++ I+++YR GRG   V+ 
Sbjct: 189 LGEVVDAICYLIEAGDQADFGELMARMPGPDFPTGGVIL-GKDGIIDAYRTGRGRLVVQG 247

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              VEE  RG   +V+TEIPY V K+ +IE IA  +  K I  + DIRDES      V+ 
Sbjct: 248 LVHVEEGKRGKSNVVITEIPYMVNKTTMIETIASCVQNKTIDGVTDIRDESDRKGLRVVL 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
             +R +DPDL++  ++  S ++  F +    L     P  + L  +L  +L HRR V+ R
Sbjct: 308 EVSRDVDPDLVIRQLYRRSQLQNTFGVINLALVD-GRPVELSLTDMLNVFLGHRRTVVRR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ FR++  + R  IL+GL+ A   ID +IA+IR  D     K  +V+    +E Q  AI
Sbjct: 367 RTEFRLKKAEARAHILEGLVKALDVIDRVIALIRGSDNAALAKERLVAELDFSEIQAQAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  ++  E   LLA+ ++  S+L+S K     I  E+  +K  +     
Sbjct: 427 LDMKLQRLTGLERDKLNDEFAGLLADIQRYRSILDSEKVLDGVIVEELVALKGKYGD--- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RRT   +    D +   + +I +E I V++S  G++R +                  
Sbjct: 484 --DRRTKIVDRVGQDCS--DEDLIPREDIVVMLSRDGYLRRVPLEDYSLQAKGGKGRRGA 539

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG-HGEAIQLLIDLNHNQDI 602
             +E D + +   + T D I L +T G+ + +    +   R   G+ I   I L +++ +
Sbjct: 540 RLREEDEVSLMGVSTTHDDIFLFTTKGRVFAIKGYIISESRTGKGKLIGKYISLENDERV 599

Query: 603 VTAFV--YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
           V+        +  L  ++ +G A  +  SE+   TR G+  + +   +++  ++  +G D
Sbjct: 600 VSMKTRRGQESGFLFFLTRRGIAKRLPSSELDNLTRAGRRVVTLDEGDEIAQILPTSGMD 659

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V    + L  S D+   M R  +GV+    KDG           +    +  +   
Sbjct: 660 DLLLVSAMGQALRVSEDEFRPMGRSARGVKAMRLKDGDRIISGEVVTEDRRPIL-VSETG 718

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  N     +  RGG G  V     R+G   ++
Sbjct: 719 IGKRTNFEDFTVHHRGGGGMKVMSINSRTGLLAAA 753



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 56/178 (31%), Gaps = 6/178 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
               +   EGD +   L     D +LL+S  G+A  +              +   + L  
Sbjct: 637 GRRVVTLDEGDEIAQILPTSGMDDLLLVSAMGQALRVSEDEFRPMGRSARGV-KAMRLKD 695

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSEEKMKLVV-- 654
              I++  V     + ++VS  G        +   + R G     + ++S   +      
Sbjct: 696 GDRIISGEVVTEDRRPILVSETGIGKRTNFEDFTVHHRGGGGMKVMSINSRTGLLAAATS 755

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
               D + V+    +++  +  +I  + R   G  +     G     +     +G   
Sbjct: 756 VSEDDEIIVMTAKGRMIRVAAKEIRVLGRTAAGSIVVRLDGGDSVVDLSVVNMDGEDL 813


>gi|330723497|gb|AEC45867.1| DNA gyrase subunit A [Mycoplasma hyorhinis MCLD]
          Length = 877

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 245/757 (32%), Positives = 399/757 (52%), Gaps = 31/757 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+    +   +   +L YA+S I  RA+PD+RDG KPVHRRI+H M+E+G+    A+KK
Sbjct: 71  DNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELGITHSVAYKK 130

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVYDS+VR++Q F  RYPLI G GNFG+IDGD AAA RYTEA
Sbjct: 131 SARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDEAAAMRYTEA 190

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A L+++ + ++ VDF   Y+  + EP V P++FPNLL +G SGIAVGMAT IP H
Sbjct: 191 RMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAVGMATKIPPH 250

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ E  + L  NP+IS+++L +++  PDFPTG  I+     I ++Y  GRG F +R+
Sbjct: 251 NLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATIL-GTSGIRQAYETGRGAFVLRS 309

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V EIPY+V+K ++IEK+ +L+  K+I  L+D+RDE+      V+F
Sbjct: 310 KAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDETNRKGIRVVF 369

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +   P++++  ++  +D++  + +NM  L    +P+V+ L  IL ++L H+ EV+ R
Sbjct: 370 DVKKGFSPEIILNQLYKETDLQITYNINMLALV-NGIPKVLNLKDILYQYLLHQEEVVTR 428

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAI 431
              F ++    R  IL G+ IA  NIDE+I IIR              RF L E Q  AI
Sbjct: 429 GLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQRFDLNEAQTKAI 488

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL  L  L   ++ +E+  L  E E+I S++NS  +    I    +++ E ++    
Sbjct: 489 VDMRLGRLTSLAIEKLIAEIKELEEEIERITSIINSHDKLIELIVNNHKKIIESYAD--- 545

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RRT       +    + + +I+++ + + ++   +I+ +               S  
Sbjct: 546 --DRRTEIV--HGSIGQIVDEDLIKEQKVVLTLTKNNYIKRINLDEYRMQNRGGTGSSTA 601

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
              + D+LK  L A T   +L+L++  + + L    +       +      LI +  ++D
Sbjct: 602 TTYKDDNLKNILVASTHSDLLILTSKARIFRLRTHQIPDLSKQAKGVPFINLIPIEKDED 661

Query: 602 IVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           IV+  V      D    L+ VS  G       S     ++ G   L +   +++      
Sbjct: 662 IVSLLVTQENYEDDNLYLVTVSKLGIIKKTSLSLYKRISKNGLIALNLKENDELLTAFIT 721

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           T +  + +   N + + F       +SR   GV+  +  +  +  V      +G T    
Sbjct: 722 TEESEIIIGASNGRSVRFDNQDFRSLSRKSMGVKGITLGENEVV-VGASSTDQGSTVFVL 780

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               Y +  +        RGG G +  K   ++G   
Sbjct: 781 GQEGYGKKTHIDEYRKTARGGKGVITLK-TEKAGNLA 816



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 5/185 (2%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +I         +     L AL+ KE D L  A        I++ +++G++      +  S
Sbjct: 687 IIKKTSLSLYKRISKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSVRFDNQDFRS 746

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   I L  N+ +V A   D    + V+  +G        E     R GK  +
Sbjct: 747 LSRKSMGV-KGITLGENEVVVGASSTDQGSTVFVLGQEGYGKKTHIDEYRKTARGGKGVI 805

Query: 643 KVSSEE--KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            + +E+   +  +  V GD  + ++ +   ++  S++Q  ++SR  KGV+L + K     
Sbjct: 806 TLKTEKAGNLAFISCVKGDEEILILTKQGIVIRTSLEQCNDVSRNTKGVKLITLKPKDSI 865

Query: 699 DVICF 703
             +  
Sbjct: 866 QSVAV 870


>gi|257482430|ref|ZP_05636471.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331009744|gb|EGH89800.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 751

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/758 (34%), Positives = 438/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE + L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIAQGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 709 QAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|222085986|ref|YP_002544518.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84]
 gi|221723434|gb|ACM26590.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84]
          Length = 934

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 243/841 (28%), Positives = 399/841 (47%), Gaps = 115/841 (13%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKYHPHGNLAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VA  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 136 QKVAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGSGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + ++++ I GPDFPTG  I+  R  I  +Y  GRG   +R   
Sbjct: 196 SEVIDGCIALIDNPAIELPEIMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSIVMRGVA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + D+++  ++  + ++T F  N+  L+ G  P+ + L  +L+ +++ R +V+ RR+
Sbjct: 315 KRDANADVILNQLYRYTPLQTSFGANVVALN-GGKPEQLTLLDMLRAFVSFREDVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------------------ 412
            + ++    R  +L GL IA  NIDE+I +IR                            
Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEVIRVIRRAPDPQSAREELMTRRWPAEDVESLIRL 433

Query: 413 -----PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                 +      ++L+E Q  AIL LRL  L  L   +I  EL+ + AE +    +L+S
Sbjct: 434 IDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   +          + +I +E + V +S+ 
Sbjct: 494 RVRIQTIVKEELIAVRDEFGTP-----RRTEIVDGGLEMD---DEDLIAREDMVVTVSHL 545

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  ++ D +      +T   +L  S+ G  Y      
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVTRLFVLNTHTPVLFFSSRGIVYKEKVWR 605

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L   +    G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 606 LPIGTPTSRGKALINMLPLEPGERITTIMPLPEDETSWDNLDVMFSTTRGTVRRNKLSDF 665

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   GV
Sbjct: 666 VQVNRNGKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFQVSDVRVFAGRNSIGV 725

Query: 688 RLQSYKDGGISDVICFKI--------------------------------------CEGL 709
           R  S   G     +                                           EG 
Sbjct: 726 RGISLASGDSIISMTIVNHVDAEPWERAAYLKRSTSERRSTTGEEEEIALVGEEVTEEGQ 785

Query: 710 T--------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLS 752
                           +  + + + +  +     +  RGG G        ++   G+ ++
Sbjct: 786 LSDERYEELKALEQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTS-KTAEIGELVA 844

Query: 753 S 753
           +
Sbjct: 845 A 845



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 8/108 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS KG        +   + R GK        K +   ++     V   + + +V
Sbjct: 798 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIGELVAAFPVEDSNQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDVICFKICEGLT 710
            +  +L+   +  I   SR  KGV + S  KD  +  V      EG  
Sbjct: 858 SDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISEPEGDD 905


>gi|304372915|ref|YP_003856124.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1]
 gi|304309106|gb|ADM21586.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1]
          Length = 877

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 244/757 (32%), Positives = 399/757 (52%), Gaps = 31/757 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+    +   +   +L YA+S I  RA+PD+RDG KPVHRRI+H M+E+G+    A+KK
Sbjct: 71  DNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELGITHSVAYKK 130

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVYDS+VR++Q F  RYPLI G GNFG+IDGD AAA RYTEA
Sbjct: 131 SARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDEAAAMRYTEA 190

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A L+++ + ++ VDF   Y+  + EP V P++FPNLL +G SGIAVGMAT IP H
Sbjct: 191 RMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAVGMATKIPPH 250

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ E  + L  NP+IS+++L +++  PDFPTG  I+     I ++Y  GRG F +R+
Sbjct: 251 NLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATIL-GTSGIRQAYETGRGAFVLRS 309

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V EIPY+V+K ++IEK+ +L+  K+I  L+D+RDE+      V+F
Sbjct: 310 KAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDETNRKGIRVVF 369

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +   P++++  ++  +D++  + +NM  L    +P+V+ L  IL ++L H+ EV+ R
Sbjct: 370 DVKKGFSPEIILNQLYKETDLQITYNINMLALV-NGIPKVLNLKDILYQYLLHQEEVVTR 428

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAI 431
              F ++    R  IL G+ IA  NIDE+I IIR              RF L E Q  AI
Sbjct: 429 GLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQRFDLNEAQTKAI 488

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL  L  L   ++ +E+  L  E E+I S++NS  +    I    +++ E ++    
Sbjct: 489 VDMRLGRLTSLAIEKLIAEIKELEEEIERITSIINSHDKLIELIVNNHKKIIESYAD--- 545

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RRT       +    + + +I+++ + + ++   +I+ +               S  
Sbjct: 546 --DRRTEIV--HGSIGQIVDEDLIKEQKVVLTLTKNNYIKRINLDEYRMQNRGGTGSSTA 601

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
              + D+LK  L A T   +L+L++  + + L    +       +      LI +  ++D
Sbjct: 602 TTYKDDNLKNILVASTHSDLLILTSKARIFRLRTHQIPDLSKQAKGVPFINLIPIEKDED 661

Query: 602 IVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           I++  V      D    L+ VS  G       S     ++ G   L +   +++      
Sbjct: 662 IISLLVTQENYEDDNLYLVTVSKLGIIKKTSLSLYKRISKNGLIALNLKENDELLTAFIT 721

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           T +  + +   N + + F       +SR   GV+  +  +  +  V      +G T    
Sbjct: 722 TEESEIIIGASNGRSVRFDNQDFRSLSRKSMGVKGITLGENEVV-VGASSTDQGSTVFVL 780

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               Y +  +        RGG G +  K   ++G   
Sbjct: 781 GQEGYGKKTHIDEYRKTARGGKGVITLK-TEKAGNLA 816



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 5/185 (2%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +I         +     L AL+ KE D L  A        I++ +++G++      +  S
Sbjct: 687 IIKKTSLSLYKRISKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSVRFDNQDFRS 746

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   I L  N+ +V A   D    + V+  +G        E     R GK  +
Sbjct: 747 LSRKSMGV-KGITLGENEVVVGASSTDQGSTVFVLGQEGYGKKTHIDEYRKTARGGKGVI 805

Query: 643 KVSSEE--KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            + +E+   +  +  V GD  + ++ +   ++  S++Q  ++SR  KGV+L + K     
Sbjct: 806 TLKTEKAGNLAFISCVKGDEEILILTKQGIVIRTSLEQCNDVSRNTKGVKLITLKPKDSI 865

Query: 699 DVICF 703
             +  
Sbjct: 866 QSVAV 870


>gi|304404373|ref|ZP_07386034.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
 gi|304346180|gb|EFM12013.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
          Length = 814

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 226/743 (30%), Positives = 379/743 (51%), Gaps = 24/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E      L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      ++K
Sbjct: 5   EQFLPAFLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+V+G  HPHGD S+Y+ +VR+AQP+   + L+ G GN+G+ D D  AA RYTEA
Sbjct: 65  SAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHMLVDGHGNWGSQDDDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D+  V F+D ++    EPVV PS++PNLL NG SGI+ G AT IP H
Sbjct: 125 RLSTIAMELLRDIDKRTVPFKDNFDNTTKEPVVLPSRYPNLLVNGVSGISAGFATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI +A  AL+ NP +++ +L+  + GPDFPTGG  +   E I E+Y  G+G   +R+
Sbjct: 185 NLREIIDACFALMANPSMTVAELMTIVRGPDFPTGG-TIMGEEGIREAYASGKGRIYIRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E+V  G   IV+TEIPYQV KSRL+  +  + + KR+  + ++RDES  +   ++ 
Sbjct: 244 KAEIEDVRGGKQQIVITEIPYQVVKSRLVTAMETIRLEKRVEGIAEVRDESGRNGLRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  F  NM  +   + P+ + L  +L  ++ H++EV+  
Sbjct: 304 ELKKDADAQGILAYLFKKTDLQVTFNFNMVAIV-NKAPRQLGLKEMLAAYIDHQKEVVTN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  +L+GL+ A   +DEIIA I+        +  +VS+F  TE Q DAI
Sbjct: 363 RTRFDLEKAEDRAHVLEGLVKALNLLDEIIATIKASKNRQDAQNNLVSKFGFTERQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+L  L  LE  Q++ EL         + S+L S K+  + I  E+ E++  F     
Sbjct: 423 LTLQLYRLTNLEITQLEKELLETQKRIAYLQSILASEKKLLSVIREEMLEIRTKFG---- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-----DLSALHFK 546
              RR+        +     + M++ E + + +S  G+I+     S      +L +   K
Sbjct: 479 -IDRRSDIR-GEVEELKVNLEVMVQSEDVLLTVSREGYIKRTTMLSYTRSGGELESAGVK 536

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           +GD ++  L  +T D +LL +  G+ + LP   +   +      A+  +I L+    ++ 
Sbjct: 537 DGDVVRHLLSVNTIDSLLLFTKKGQYFVLPVHQVPEFKWKDNGTALVNVIPLSKEDSVIG 596

Query: 605 AFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GD 659
                     +  LL ++ +G     E  E  +N        KV   +++  V++     
Sbjct: 597 IVPIRDFDQASASLLFITKRGQVKRTELKEYKSNRSTAIAACKVGDGDEVIAVLESNSNQ 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V      + F   ++  M R   GVR    KD            +    +  +   
Sbjct: 657 ELLLVSRQGMAIRFPETEVNPMGRVAAGVRGMQLKDDDEIVGCALVANDEGEVLVLSDLG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVP 741
           Y +        +  RGG G    
Sbjct: 717 YGKRSLLAEYPIQGRGGKGIATF 739


>gi|284928910|ref|YP_003421432.1| DNA gyrase subunit A [cyanobacterium UCYN-A]
 gi|284809369|gb|ADB95074.1| DNA gyrase subunit A [cyanobacterium UCYN-A]
          Length = 854

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 238/793 (30%), Positives = 384/793 (48%), Gaps = 66/793 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T+ ++ +    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLVPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL+ G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRSPLVDGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +  + +L+ ++ + VDF D ++    EPVV PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLRNLSTDALLRDIEFETVDFADNFDGSQKEPVVLPSRIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI NPE+  + L++ I GPDFPTGG I+  R  I E+Y  GRG 
Sbjct: 182 NIPPHNLGELIDGTIALIHNPELEEKDLIKIIPGPDFPTGGQIL-GRSGIHEAYMTGRGS 240

Query: 250 FRVRARWCV----EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +     +       I++T++PYQ  KS LIE+IA+++  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETLEYQGRSNRDAIIITQLPYQTNKSALIERIADMVNDKRIDGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R     +++ +I+  + ++  F  NM  L     PQ++ L   L  ++
Sbjct: 301 DREGMRIVIELKRDAHSRVVLNNIYKQTPVQANFGANMLALVK-GEPQLLTLKNFLTVFI 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE---IIAIIRNEDKPKPVMVSRFS 422
           + R E + RRS + ++  + R  +L+GLLIA  ++D    II    +    K  ++ +F 
Sbjct: 360 SFRVETIIRRSKYELRKAEERNHLLQGLLIALDSLDPIISIIRSADDSITAKKKLIDQFE 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAIL ++LR L  LE  +I +E   L  +   ++ +L+  ++    I  E+ ++
Sbjct: 420 LSDVQADAILQMQLRRLTALEAEKIHAEHKELQIKIANLNDILSKKERIEAIIEEELVQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K I         R T        +   +   +I  E   ++++ +G+I+ +   S D   
Sbjct: 480 KNIHGTP-----RCTEII---HDEGEIVDTDLIANEQAIILLTEQGYIKRMPVSSFDAQQ 531

Query: 543 L--------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                      KE D ++  L     D +LL S  G  Y   A  +   S    G  I  
Sbjct: 532 RATRGKAGAKIKENDVVEHFLTCCDHDVVLLFSDRGVVYATNAYQIPSSSRTSRGVPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ ++ ++ I +      +     L++++ +G       S        G   + +   ++
Sbjct: 592 MLSISKSEKITSIISVSEFKEDIFLVMLTRQGYIKKTALSAFSNIRTNGLIAISLGEGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           ++ V      D V +       + F  D  Q+  + R  +GV+    K       +    
Sbjct: 652 LRWVRLTREEDSVILGTRLGMAIHFHADHQQLRPLGRATRGVKSMRLKKKDELISMDILS 711

Query: 706 CE-----------------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
            +                             G   +    + Y +        L +R G+
Sbjct: 712 AQVTIGVEESQDNEEVLEIEPEELTEKETSLGPWILAITNKGYGKRIPITQFRLQRRAGM 771

Query: 737 GSLVPKGFPRSGK 749
           G    K   +SGK
Sbjct: 772 GVRAIKF--KSGK 782



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLVVKVT-GDHVAVVGENRK 669
           +L +++KG    +  ++     R G     +K  S  + +  +  V   D + +V     
Sbjct: 746 ILAITNKGYGKRIPITQFRLQRRAGMGVRAIKFKSGKDNLTSLRVVNAEDELMIVSNRGI 805

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  ++  I   SR   GVR+Q   +      +     
Sbjct: 806 IIRQAVKAISLQSRSATGVRVQRLDEDDAIAAVALVPP 843


>gi|237798261|ref|ZP_04586722.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021113|gb|EGI01170.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 751

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 267/758 (35%), Positives = 438/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LTEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++PA  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIAQGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 709 QAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|330873810|gb|EGH07959.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 751

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/758 (34%), Positives = 436/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEARALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L +    K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVITQGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 709 QAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|330984579|gb|EGH82682.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 751

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/758 (34%), Positives = 437/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P  ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPNATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE + L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAIFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIAQGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 709 QAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|213967906|ref|ZP_03396052.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301384425|ref|ZP_07232843.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062283|ref|ZP_07253824.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           K40]
 gi|302132287|ref|ZP_07258277.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927249|gb|EEB60798.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           T1]
          Length = 751

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 264/758 (34%), Positives = 436/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  D   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHDNPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L +    K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADRELN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIAQGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 709 QAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|17982834|gb|AAL52065.1| DNA gyrase subunit a [Brucella melitensis bv. 1 str. 16M]
          Length = 902

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 260/831 (31%), Positives = 401/831 (48%), Gaps = 114/831 (13%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA +VGEV+GK
Sbjct: 1   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+ +V E +L 
Sbjct: 61  YHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLS 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +A
Sbjct: 121 DIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R  +E +    
Sbjct: 181 LIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRATIEPMRGDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+    R    D++
Sbjct: 240 EAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+ F +     
Sbjct: 300 LNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRTKFLLNKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKP-----------------------------V 416
           R  +L GL IA  NIDE+IA+IR    P                                
Sbjct: 359 RAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLN 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
             + ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S  +  N + 
Sbjct: 419 EDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  V++ F+       RRT   E+         + +I +E + V +S+ G+I+     
Sbjct: 479 EEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLT 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
                +      S +  KE D +     A+T   +L  S+ G  Y      L   + +  
Sbjct: 531 TYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQSR 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKT 640
           G+A+  ++ L   + I T               ++  +++G     + S+ +   R GK 
Sbjct: 591 GKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKI 650

Query: 641 FLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGG 696
            +K+    +++  V   T  D V +     + + F +  +     R   GVR  +  +G 
Sbjct: 651 AMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGD 710

Query: 697 ISDVICF---------------------------KICEGL-------------------- 709
               +                                + +                    
Sbjct: 711 KVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQE 770

Query: 710 ------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG--FPRSGKFLS 752
                 T +  +   Y +  +     +  RGG G            GK ++
Sbjct: 771 LKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVA 821



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 775 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 834

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 835 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 887


>gi|260433573|ref|ZP_05787544.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417401|gb|EEX10660.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157]
          Length = 909

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 261/855 (30%), Positives = 414/855 (48%), Gaps = 117/855 (13%)

Query: 6   ISNSNTLVEENVKA-----------VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVH 54
           +S++  + E   +            VS+   +   YL YA+S I  RAIPDLRDG KPVH
Sbjct: 1   MSDTPEIPENMDETPPERPVYDGPTVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI++AM E G      ++KSAR VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ G
Sbjct: 61  RRILYAMHETGNTHDKPYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           QGNFG++DGD+ AA RYTE RM + A  +L  ++++ VDF+D Y+ +D EP V P++FPN
Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAAALLADIEKETVDFQDNYDGKDKEPTVLPARFPN 180

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
           +L NG  GIAVGMAT+IP HN+ E+ +A LALI++P+++ E+L+EYI GPDFPTGG ++ 
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVDATLALIEDPDLTSEQLIEYIPGPDFPTGG-VML 239

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R    ++Y  GRG   +RA+  VEE+ +  + IVV EIPYQV K+ +IEKIAE +  KR
Sbjct: 240 GRSGARKAYLEGRGSVIIRAKTRVEEIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKR 299

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  +  ++DES  +   V+    R   P++++  ++  + M+T F  NM  L+ G  P+ 
Sbjct: 300 IEGVSHVQDESDRNGVRVVVELKRDATPEVVLNQLYRFTPMQTSFGCNMLALN-GGRPEQ 358

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           + L   L  ++  R +V+ RR+++ ++    R  +L GL +A  N+DE++A IR+     
Sbjct: 359 LTLRRFLTSFIDFREDVVARRTAYDLRKARERSHVLCGLAVAVSNVDEVVATIRSSADAA 418

Query: 415 P-----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              ++L+E Q  AIL+LRL+ L ++   
Sbjct: 419 EAREKLMTRRWPAAEIESYLRLIDDPLSKMNDDGTYNLSEAQARAILDLRLQRLTQIGVK 478

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++  EL++L A+ ++   +L+S ++    IA E+REVKE F+       RRT   + S  
Sbjct: 479 EVTDELEDLAAKIKEYLDILSSRERIMGIIADELREVKENFAVP-----RRTQIVDWSGD 533

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
            +    + +IE+E + V +++ G+I+          K     LS +  KE D +     A
Sbjct: 534 ME---DEDLIEREDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVA 590

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD------ 609
           +T  ++L  +TDG  Y L    L      G G+AI  ++ +     I      D      
Sbjct: 591 NTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEW 650

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENR 668
              +++  +S G+      S+     R GK  + +    ++         D V +V  + 
Sbjct: 651 ENLQIVFATSAGDVRRNALSDFTNVKRNGKIAMDLPEGVELVNARICSEDDDVMLVTNSG 710

Query: 669 KLLIFSIDQIPE-MSR-GKGVRLQSYKDGGISDVICF----------------------- 703
           + + F    +     R   GVR     DG     +                         
Sbjct: 711 RAIRFPTTDVRVFKGRKSTGVRGIRLNDGDRVVSMSVIRHSKYTPEQRTAYLKMRRAMAG 770

Query: 704 --KICE-----------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
                E                           +        +  +     +  RGG+G 
Sbjct: 771 LTDDAEPSDEEAVADPNFSTELYAEMSAVENLILTITAGGSGKLSSSHDYPVRGRGGMGV 830

Query: 739 LVPKGFPRSGKFLSS 753
           +      R G  ++S
Sbjct: 831 MAMDKAMRGGPLVAS 845



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGE 666
              +L +++ G+  +    +     R G   + +        +     V   D + +   
Sbjct: 800 ENLILTITAGGSGKLSSSHDYPVRGRGGMGVMAMDKAMRGGPLVASFPVEMDDQIMLATS 859

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
             + +   +D I   SR   GV++ +   G     +     +G  
Sbjct: 860 KGQSIRVPVDGISFRSRSAGGVKVFNTGKGEEVVSVARIADQGDD 904


>gi|292655723|ref|YP_003535620.1| DNA gyrase subunit A [Haloferax volcanii DS2]
 gi|291370320|gb|ADE02547.1| DNA gyrase subunit A [Haloferax volcanii DS2]
          Length = 862

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 240/776 (30%), Positives = 386/776 (49%), Gaps = 32/776 (4%)

Query: 1   MGVDNIS--NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  D          +   VK   +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI+
Sbjct: 1   MSSDAPDSFEPGAGIAAEVKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM + G+   ++ +KS+ IVGE +G  HPHGD ++YD+L R+AQ F  RYPL+ GQGNF
Sbjct: 61  YAMHQAGVTSNSSHRKSSSIVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGD  AA RYTEARM+ +AE +L  +D+D VDF+  Y++   EP V PS FPNLL N
Sbjct: 121 GSVDGDPPAAMRYTEARMSPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+SGIAVGM+T+IP HN+ E+ +A + LI+NP+ ++  L+E+I GPDFPTG  IV  R +
Sbjct: 181 GSSGIAVGMSTNIPPHNLGEVVDATVELIENPDATVADLMEHIKGPDFPTGANIV-GRNA 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           + ++Y+ GRG  RVRA + V E       IV+ E+PYQ  K+RLIE+IA+ +   +I  +
Sbjct: 240 VHKAYKTGRGRVRVRADYDVFEEE---GRIVINELPYQENKARLIERIADDVNEGKIEGI 296

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            DIRDES  D   V+    R +  +++  +  + + +E+ F +    L     PQV+ L 
Sbjct: 297 RDIRDESDRDGIRVVIELKRGVMAEVVK-NQLLDNHLESTFGVINLALVD-GQPQVLTLK 354

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--- 415
             L+ +L HRR+V+ RRS + +   + R  IL G L A  NID+++  IRN +       
Sbjct: 355 ETLEHYLDHRRDVVRRRSEYELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKA 414

Query: 416 ------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                         +  F  +E Q + I++++L SL  +E  +I++E +++ A  E++++
Sbjct: 415 ALRGEVEVEVGGEPLPTFDFSEEQANHIVSMQLGSLTSMEAAEIEAEYEDVQATIERLET 474

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L    +    I  E+ ++K+ ++          T               ++  E   + 
Sbjct: 475 ILGDQSELDAVIESELLDIKDEYADDRRTSFVANTGEVTRADLIPEEDVVVVVSEDDYIK 534

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                  R        +     KEGD++      +T D +L  +  G+ Y L A  +   
Sbjct: 535 RMPVSRFRDQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQVYQLKAYQVPEM 594

Query: 584 RG--HGEAIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRK 637
                G++   L+D +  ++I      D        L +V+  G                
Sbjct: 595 SRTARGKSAVNLLDFDDGEEITAVVNCDDLEDIEGYLTMVTRNGYIKRTGTDRFQNILST 654

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-D 694
           G    K+   +++  V    G+  + +  E    + F  D++  M R  +GVR    + D
Sbjct: 655 GIIATKLDEGDELVDVEVTGGESDLVIGTERGMSIRFDEDEVRAMGRSARGVRGIKLEGD 714

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             ++ V           +      Y +  +        R G G +  K   R+G  
Sbjct: 715 DVVAGVAAIDEDHHSWILTVTENGYGKRTDLDAYRTQSRNGKGLIDIKANERNGPV 770



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 7/120 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           I L  +  +      D      +L V+  G     +       +R GK  + + + E+  
Sbjct: 709 IKLEGDDVVAGVAAIDEDHHSWILTVTENGYGKRTDLDAYRTQSRNGKGLIDIKANERNG 768

Query: 652 LVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
            V  +     GDH+ V+ +  ++L   ++ I  + R   GV +    +G     +     
Sbjct: 769 PVCAINTVGEGDHLVVMSDEGQILRTPVEDISTVGRNTMGVIVMDLDEGDDVASVDVIPA 828


>gi|311742170|ref|ZP_07715980.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium
           marinum DSM 15272]
 gi|311314663|gb|EFQ84570.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium
           marinum DSM 15272]
          Length = 855

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 228/786 (29%), Positives = 390/786 (49%), Gaps = 50/786 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++  +  + ++ V L+  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G
Sbjct: 1   MTDTP-IERDRIEPVELQDEMQRSYIDYAMSVIVARALPDVRDGLKPVHRRVLYAMYDGG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F K +RI+G+V+G+ HPHGD ++YD+LVRLAQP+V R P+ISGQGNFG+   D 
Sbjct: 60  YRPDRGFSKCSRIIGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPMISGQGNFGSPGDDP 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE ++  VA  +++ +DE+ VDF+  Y+   SEP V PS+ PNLL NG++GIAV
Sbjct: 120 AAAMRYTECKLAPVAMEMVRDIDEETVDFKPNYDGRSSEPTVLPSRIPNLLVNGSAGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ E A   + +PE +  +LL+     I GPDFPT G ++     I +
Sbjct: 180 GMATNIPPHNLREVAEGAQWALAHPEATRTELLDALLERIKGPDFPTHG-LIVGTSGIED 238

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            YR GRG   +RA   +EE  +G   +VVTE+PYQV    L+ KIA+L+   R+  + D+
Sbjct: 239 MYRTGRGSVTMRAIVGIEEDTKGRIQLVVTELPYQVNPDSLMRKIADLVNTGRLQGVSDL 298

Query: 302 RDESAEDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           RDES+  V R ++    R     +++ +++  +D+++ F  NM  L    VP+ + LDG 
Sbjct: 299 RDESSSRVGRRIVIEIRRDAVARVVLNNLYKHTDLQSNFSANMLALVDD-VPRTLTLDGF 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-- 418
           +  W+ H+ +V+ RR+ +R++  + R  I +GL  A   +D++IA+IR            
Sbjct: 358 ITNWIHHQIDVIRRRTEYRLRKAEERAHIFRGLGKALDRLDDVIALIRRSPTVDEARTGL 417

Query: 419 -SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + E Q +AIL ++LR L  LE  +I  EL  L         +L   ++Q   ++ 
Sbjct: 418 IELLEIDEIQANAILEMQLRRLAALERQKILDELAELERMIADFTDILERPERQREIVST 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH- 536
           E+ E+ + +        RR+       AD     + +I  E + V I++ G+ +  K+  
Sbjct: 478 ELAEIVDKYGD-----DRRSRII---PADGDLSDEDLIPDEEVVVTITSGGYAKRTKTDL 529

Query: 537 -------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE- 588
                     +     ++GD ++          IL  +T G+ Y   A +L       + 
Sbjct: 530 YRVQHRGGKGVRGAQLRDGDFVEHLFPTTAHHWILFFTTAGRVYRAKAYHLPEAGRDAKG 589

Query: 589 -AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             +  L+    ++ I        Y+    L++ + KG       ++  +  + G   +  
Sbjct: 590 GHVAGLLSFQPDEQIAQVLAVRDYEQAPYLVLATRKGLVKKTRLTDYNSPRQAGVIAINF 649

Query: 645 -SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYK-DGGIS 698
              ++++     V   D + ++    + + F  D   +  M R   GV    ++ +  + 
Sbjct: 650 RDDDDELIGAELVGPDDDLLLISRKAQAIRFRADDEQLRPMGRATSGVTGMKFRGEDDLL 709

Query: 699 DVIC------------FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            +                  + L         + +        L  RGG+G    +    
Sbjct: 710 SMTVIRREHAALDAEEVADEDKLYVFTVTDGGFAKKTPVGEYRLQGRGGLGIKAMQITGA 769

Query: 747 SGKFLS 752
            G+ + 
Sbjct: 770 RGELVG 775


>gi|261211526|ref|ZP_05925814.1| topoisomerase IV subunit A [Vibrio sp. RC341]
 gi|260839481|gb|EEX66107.1| topoisomerase IV subunit A [Vibrio sp. RC341]
          Length = 761

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 282/751 (37%), Positives = 442/751 (58%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ EA + LID+P   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVAEATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE +  R  +R+  +  R+ +L+GLLIAYLN+DE+I IIR ED PK V+++RF+LT+
Sbjct: 357 TFRRETVRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRTEDDPKAVLMARFNLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L +
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHDVDGQSLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|28872074|ref|NP_794693.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855328|gb|AAO58388.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331014591|gb|EGH94647.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 751

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/758 (34%), Positives = 436/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L +    K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADRELN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIAQGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 709 QAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|289628176|ref|ZP_06461130.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 751

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 265/758 (34%), Positives = 438/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +PSHN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPSHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D   
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDAIG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIAQGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 709 HAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|291531941|emb|CBK97526.1| DNA gyrase subunit A [Eubacterium siraeum 70/3]
          Length = 878

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 241/782 (30%), Positives = 385/782 (49%), Gaps = 55/782 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   + E +L Y+++ +  RA+PD+RDG KPVHRRII+ M+E        ++K
Sbjct: 13  EKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A  VGEV+GK HPHGD SVYD+LVRLAQ F  RYPLI G GNFG++DGD  AAYRYTEA
Sbjct: 73  CAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L+ + +D +D+   Y+++  EP V P KFPNLL NG+ GIAVGMAT+IP H
Sbjct: 133 RMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+C+A +A +DNPE  IE++L+YI GPDFPTGG I+     I  +Y  GRG   +R 
Sbjct: 193 NLNEVCDAIVARMDNPECGIEEILQYIKGPDFPTGG-IIMGYSGIRSAYYTGRGKITLRG 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E G     I+VTEIPY V KS+L+E   +L+  KRI  + ++RDES +D   +++
Sbjct: 252 KAEIVEEG-NHSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDGMRIVY 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++  +++  ++  + ++    + M  L     P+ + L  IL  ++A +++++ R
Sbjct: 311 ELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALV-NGEPKQLTLLEILDNYIAFQKQIITR 369

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R++F ++    R  IL+G L+A  NIDE+I+I+R+    +                    
Sbjct: 370 RTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQ 429

Query: 416 ----------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            L+E Q DAI+ +RL  L  LE  ++ SEL  ++ +      +L
Sbjct: 430 RAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDIL 489

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S ++    I  EI  +KE +        RRT    +S        + +I +E   +  +
Sbjct: 490 SSDERVKEIIKEEITAIKEKYGDE-----RRTAIEPISGE---VDIEDLIPEEECVLTYT 541

Query: 526 NRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           N G+I+          K     +S +  +E D ++    + T D IL ++  G  Y L  
Sbjct: 542 NIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKC 601

Query: 578 GNLLS--GRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII 632
             +     +  G  I  L+ L+  + I        +      + V+  G        +  
Sbjct: 602 YEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRTPLYDFR 661

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
              + G   + ++  +++       GD  + +       + FS D+I  M R   GVR  
Sbjct: 662 NVRKNGLRAITLAEGDEIAAAHLTEGDSSIIIATHLGMAIHFSEDKIRSMGRLAAGVRAI 721

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             ++            + +  +    + Y R        +  RGG G    K     G  
Sbjct: 722 KLREDDYIVGAAKVYSDDMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKIRDDRGYV 781

Query: 751 LS 752
             
Sbjct: 782 CG 783



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 94/315 (29%), Gaps = 22/315 (6%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             LT   +  I    +      +             E    D  ++S       I     
Sbjct: 536 CVLTYTNIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGN 595

Query: 481 EVKEI-FSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
             K   +       + R T        +      A ++ +   +    + ++  G I+  
Sbjct: 596 MYKLKCYEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRT 655

Query: 534 KSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +         L A+   EGD +  A        I++ +  G A      + +   G  
Sbjct: 656 PLYDFRNVRKNGLRAITLAEGDEIAAAHLTEGDSSIIIATHLGMAIHFS-EDKIRSMGRL 714

Query: 588 EAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
            A    I L  +  IV  A VY    ++L V+ KG   +   S+     R G        
Sbjct: 715 AAGVRAIKLREDDYIVGAAKVYSDDMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKI 774

Query: 647 EEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
            +    +  +  + T D V ++  +  ++    + +  M R   GVR+    D     V+
Sbjct: 775 RDDRGYVCGIRSIQTDDDVILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDR--VV 832

Query: 702 CFKICEGLTWIDSAG 716
            F   E     D   
Sbjct: 833 TFTRTEHDETADIEE 847


>gi|311112566|ref|YP_003983788.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
 gi|310944060|gb|ADP40354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
          Length = 879

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 228/783 (29%), Positives = 378/783 (48%), Gaps = 35/783 (4%)

Query: 1   MGVDNISNSNTL-------------VEENVKAVSLRFALEERYLAYALSTIKERAIPDLR 47
           M  +N S +  +                +++ V L+  ++  YL YA++ I  RA+PD+R
Sbjct: 1   MSEENQSENPDIEVTTNSGEIVLDDPHGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVR 60

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+I+AM + G     AF K AR+VG+V+G+ HPHGD ++YD+LVRL Q ++ 
Sbjct: 61  DGLKPVHRRVIYAMYDGGYRPDRAFNKCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIM 120

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RYPL  GQGNFG+   D AAA RYTE +M  +A  +++ ++ED VDF+  Y+ +  EP V
Sbjct: 121 RYPLALGQGNFGSPGNDGAAAPRYTETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTV 180

Query: 168 FPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIG 223
            P++ PNLL NG+SGIAVGMAT+IP HN++E+       + NP  + E+    L+E I G
Sbjct: 181 LPARIPNLLVNGSSGIAVGMATNIPPHNLREVAAGVEWFLKNPNATNEELLSALMERIKG 240

Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283
           PDFPTG  I+   + I ++YR GRG   +RA   VEE+  G  C+VVTE+PYQ     L 
Sbjct: 241 PDFPTGATIL-GTKGIEDAYRTGRGSITMRAVVNVEEI-HGRTCLVVTELPYQANPDNLA 298

Query: 284 EKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
            KIA+LI   ++  + D+RDE++    + ++    R   P +++ +++  + ++  F  N
Sbjct: 299 IKIADLIKEGKVTGISDLRDETSGRTGQRLVIVLKRDAVPKVVLNNLYKHTQLQENFSAN 358

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           M  +    VP+ + LD  ++ W+ H+ +V+ RR+ +R++  +    IL+GLL A   +DE
Sbjct: 359 MLAIVD-GVPRTLSLDAFIRHWVNHQMDVIVRRTRYRLRQAEEEAHILRGLLKALDALDE 417

Query: 403 IIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           +IA+IR            +    + E Q  AILN++LR L  LE  +I+   D L     
Sbjct: 418 VIALIRRSPTADEARSALMDFLDIDEAQAQAILNMQLRRLAALERQKIQDRHDELQRLIS 477

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           + ++++ S  +Q   I+ E+ E+   +         R    ++S  D    ++ ++    
Sbjct: 478 EYNAIIASEDRQREIISEELGEIVNRYGDDRRTEILRGFNGDMSMEDLIPEEEVVVTITR 537

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              +  +     RS       +     +  D ++      T   IL  +  G+ Y     
Sbjct: 538 GGYIKRTRSDQYRSQHRGGKGIRGAQLRGDDVVEHFFVTTTHSWILFFTNLGRVYRTKGY 597

Query: 579 NLLSGRGHGEAIQ--LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIA 633
            L       +      L++   ++ I        Y+    L++ +  G       S+   
Sbjct: 598 ELQEAGRDAKGQHLANLLEFQPDEHIAQVMDLKTYEDAEYLVLATKGGLVKKSRLSDYDT 657

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRL 689
           N   G   + +  ++++     V+  D + ++  N   L F  +   +  M R   GV  
Sbjct: 658 NRTAGLIAINLRDDDEVVSAFLVSPEDDILLISRNGMSLRFHANNESLRPMGRSTSGVTG 717

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
             ++DG         I E           Y +  +     +  R G G  V K     G 
Sbjct: 718 MKFRDGDELISAQVVIPESF-VFVVTEGGYAKRTHVEGYRVQGRNGFGIKVAKLVEGRGA 776

Query: 750 FLS 752
            + 
Sbjct: 777 LVG 779


>gi|113952792|ref|YP_730186.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
 gi|113880143|gb|ABI45101.1| DNA gyrase, A subunit [Synechococcus sp. CC9311]
          Length = 892

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 232/790 (29%), Positives = 394/790 (49%), Gaps = 60/790 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +  + +L+ ++ + VDF D ++    EP V PS+ P LL NG++GIAVGMAT+I
Sbjct: 135 ESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    LALI NPEI+ ++L+  I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 195 PPHNLGELITGLLALIRNPEITDQELMALIPGPDFPTGGQIL-GRSGIRETYLTGRGSVT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +V+T +PYQ  K+ +IE+IAE++  K++  + DIRDES  
Sbjct: 254 MRGVAGIETIEAPGRPDRDAVVITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   V+    R   P +++ +++ L+ +++ F  +M  L     P ++ L  +L+ +L  
Sbjct: 314 DGMRVVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNS-EPILLTLRKMLEVFLEF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLT 424
           R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L+
Sbjct: 373 RVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQERHGLS 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ ++++
Sbjct: 433 AVQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIEDELGQLRD 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SH 536
             +       RRT   +++   +      +I  E   V+++  G+++ +           
Sbjct: 493 RHAVP-----RRTEILDLAGGLEDI---DLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
           +   +    +  +++K+ +  +  D +LL S  G +Y +PA  +       +   I  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYAVPAYRVPQCSRTAKGTPIVQLL 604

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I +      ++    LL++++ G       S        G   + +   + + 
Sbjct: 605 PIPREEAITSLLAVSEFNDDTDLLMLTTGGYIKRTRLSAFSNIRSNGLIAIGLEEGDALT 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG----------- 696
            V   V GD V +       + F +    +  + R  +GVR  + ++G            
Sbjct: 665 WVRLAVPGDSVLIGSRAGMTIHFRLSDNELRPLGRTARGVRSMNLREGDSLVSMDVLPAE 724

Query: 697 ISDVICFKICEGLT--------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           ++D I   + E                  + ++     +        L KR G+G    K
Sbjct: 725 LADQIAASVDEDDEGSDGGESAAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMK 784

Query: 743 GFPRSGKFLS 752
               + + + 
Sbjct: 785 FRTDADELVG 794



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLVVKV-TGDHVAVVG 665
               +LV S+ G    V  ++     R G     +K  ++ +++  +  +  G+ + +V 
Sbjct: 749 EGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVGLRVLGAGEELLLVS 808

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           E   ++    D IP+ SR   GVRLQ    G     +     E  T
Sbjct: 809 EKGVIVRTGADAIPQQSRAATGVRLQRLDKGDRLADVVLVPPEAET 854


>gi|190891755|ref|YP_001978297.1| DNA gyrase, A subunit [Rhizobium etli CIAT 652]
 gi|190697034|gb|ACE91119.1| DNA gyrase protein, A subunit [Rhizobium etli CIAT 652]
          Length = 919

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 240/834 (28%), Positives = 391/834 (46%), Gaps = 115/834 (13%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+ + A  +
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +  
Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +ALI++P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R    +E +  
Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVAAIEPMRG 240

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
               I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+    R  + +
Sbjct: 241 DREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAE 300

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  ++  + ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+ F ++  
Sbjct: 301 VILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKA 359

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDK-----------------------------PK 414
             R  +L GL IA  NIDE+I +IR                                  +
Sbjct: 360 RERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                 ++L+E Q  AIL LRL  L  L   +I  EL+ +  E      +L+S  +    
Sbjct: 420 INEDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E+  V++ F        RRT   +          + +I +E + V +S+ G+I+   
Sbjct: 480 VKDELTAVRDEFGTP-----RRTEIVDGGLEMD---DEDLIAREDMVVTVSHLGYIKRVP 531

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
                  +      S +  ++ D +      +T   +L  S+ G  Y      L   +  
Sbjct: 532 LTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKG 638
             G+A+  ++ L   + I T               ++  +++G     + S+ +   R G
Sbjct: 592 SRGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVNRNG 651

Query: 639 KTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKD 694
           K  +K+    +++  V   T  D V +     + + FS+D +     R   GVR  +  +
Sbjct: 652 KIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGE 711

Query: 695 GGISDVICFK-------------------------------------------------- 704
           G     +                                                     
Sbjct: 712 GDRIISMTIVGHVDAEPWERAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYE 771

Query: 705 --ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLSS 753
                    +  + + + +  +     +  RGG G        ++   G+ +++
Sbjct: 772 ELKAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTS-KTGEIGELVAA 824



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        +   + R GK        K     ++     V  GD + +V
Sbjct: 777 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 836

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDV 700
            +  +L+   +  I   SR  KGV + S  KD  +  V
Sbjct: 837 SDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSV 874


>gi|71734792|ref|YP_272849.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555345|gb|AAZ34556.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 751

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/758 (34%), Positives = 438/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE + L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIAQGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 709 QAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|167751436|ref|ZP_02423563.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702]
 gi|167655682|gb|EDR99811.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702]
          Length = 878

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 244/782 (31%), Positives = 386/782 (49%), Gaps = 55/782 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   + E +L Y+++ +  RA+PD+RDG KPVHRRII+ M+E        ++K
Sbjct: 13  EKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A  VGEV+GK HPHGD SVYD+LVRLAQ F  RYPLI G GNFG++DGD  AAYRYTEA
Sbjct: 73  CAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L+ + +D +D+   Y+++  EP V P KFPNLL NG+ GIAVGMAT+IP H
Sbjct: 133 RMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+C+A +A +DNPE SIE++L+YI GPDFPTGG I+     I  +Y  GRG   +R 
Sbjct: 193 NLNEVCDAIVARMDNPECSIEEILQYIKGPDFPTGG-IIMGYSGIRSAYYTGRGKITLRG 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E G     I+VTEIPY V KS+L+E   +L+  KRI  + ++RDES +D   +++
Sbjct: 252 KAEIVEEG-NHSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDGMRIVY 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++  +++  ++  + ++    + M  L     P+ + L  IL  ++A +++++ R
Sbjct: 311 ELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALV-NGEPKQLTLLEILDNYIAFQKQIITR 369

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R++F ++    R  IL+G L+A  NIDE+I+I+R+    +                    
Sbjct: 370 RTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQ 429

Query: 416 ----------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            L+E Q DAI+ +RL  L  LE  ++ SEL  ++ +      +L
Sbjct: 430 RAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDIL 489

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S ++    I  EI  +KE +        RRT    VS        + +I +E   +  +
Sbjct: 490 SSDERVKEIIKEEITAIKEKYGDE-----RRTAIEPVSGE---VDIEDLIPEEECVLTYT 541

Query: 526 NRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           N G+I+          K     +S +  +E D ++    + T D IL ++  G  Y L  
Sbjct: 542 NIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKC 601

Query: 578 GNLLS--GRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII 632
             +     +  G  I  L+ L+  + I        +      + V+  G        +  
Sbjct: 602 YEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRTPLYDFR 661

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
              + G   + ++  +++       GD  + V       + FS D+I  M R   GVR  
Sbjct: 662 NVRKNGLRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSMGRLAAGVRAI 721

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             ++            + +  +    + Y R        +  RGG G    K     G  
Sbjct: 722 KLREDDYIVGAAKVYSDDMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKIRDDRGYV 781

Query: 751 LS 752
             
Sbjct: 782 CG 783



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/315 (15%), Positives = 93/315 (29%), Gaps = 22/315 (6%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             LT   +  I    +      +             E    D  ++S       I     
Sbjct: 536 CVLTYTNIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGN 595

Query: 481 EVKEI-FSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
             K   +       + R T        +      A ++ +   +    + ++  G I+  
Sbjct: 596 MYKLKCYEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRT 655

Query: 534 KSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +         L A+   EGD +  A        I++ +  G A      + +   G  
Sbjct: 656 PLYDFRNVRKNGLRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFS-EDKIRSMGRL 714

Query: 588 EAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
            A    I L  +  IV  A VY    ++L V+ KG   +   S+     R G        
Sbjct: 715 AAGVRAIKLREDDYIVGAAKVYSDDMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKI 774

Query: 647 EEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
            +    +  +  +   D V ++  +  ++    + +  M R   GVR+    D     V+
Sbjct: 775 RDDRGYVCGIRSIQADDDVILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDR--VV 832

Query: 702 CFKICEGLTWIDSAG 716
            F   E     D   
Sbjct: 833 TFTRTEHDETADIEE 847


>gi|157372492|ref|YP_001480481.1| DNA topoisomerase IV subunit A [Serratia proteamaculans 568]
 gi|157324256|gb|ABV43353.1| DNA topoisomerase IV, A subunit [Serratia proteamaculans 568]
          Length = 757

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 282/757 (37%), Positives = 452/757 (59%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSD---LTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLAELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  AA+ALID P  S+E+LLE++ GPD+PT   I+  RE I + Y+
Sbjct: 178 VGMATDIPPHNVREVAAAAVALIDKPGASLEELLEFVQGPDYPTEAEIITPREEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 NGRGSVRMRAVWSKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D +M  +F  +D+E  + +NMN++ +   PQV  L  IL 
Sbjct: 293 SDHENPTRLVIVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDNRPQVKGLVEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++ RF 
Sbjct: 353 EWLAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMQRFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +++ Q +AIL L+LR L KLEE++I+ E D L  E++++ +LL S ++    I  EI+  
Sbjct: 413 ISDTQAEAILELKLRHLAKLEEFKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E + A KA  +   +  EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AQAYGD-----DRRSPITERAEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    T   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LSYKAGDSFRSAARGKTNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S  G  F+   ++++A  R GK  + +    K    +++ G+   
Sbjct: 587 EQVLMAADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITLPDNAKALAPMEIHGEDDM 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWID 713
           +  +    ++L F +  +P++S+GKG ++ S         +  ++ +      +    + 
Sbjct: 647 LLSITAAGRMLFFPVADLPQLSKGKGNKIVSIPSAQAASGEDKLAWLFVL-PPQTSVTLH 705

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              R       DL  +  +RG  G+ +P+G  R  + 
Sbjct: 706 VGKRKLTLRPEDLQKFRAERGRKGTSLPRGLQRIDRV 742


>gi|254444720|ref|ZP_05058196.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235]
 gi|198259028|gb|EDY83336.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235]
          Length = 820

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 251/753 (33%), Positives = 387/753 (51%), Gaps = 31/753 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E + + S+   ++  Y+ Y++S I  RA+PD RDG KPV RRI++AM   GL   
Sbjct: 2   ENISNERISSTSITDIMQTAYIDYSMSVIVSRALPDARDGLKPVQRRILYAMLREGLLHN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            AF K A +VGEV+   HPHGD SVYD+LVR+AQ +V RYPLI  QGNFG++DGDS AAY
Sbjct: 62  RAFDKCAGVVGEVLKNYHPHGDSSVYDTLVRMAQKWVMRYPLIDPQGNFGSVDGDSPAAY 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+T +AE +L+ +DED VDF   Y E  +EP V P+  PNLL NG++GIAVGMAT
Sbjct: 122 RYTEARLTAIAEDLLRNIDEDTVDFVANYKESTTEPSVLPAGLPNLLMNGSTGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +   A IDNP I+I +L E I GPDFPTGG I+  R+ I E    GRG 
Sbjct: 182 NIPPHNLDELIDGVCAQIDNPNITIAELGELIQGPDFPTGGRII-GRKGIDEYMNTGRGI 240

Query: 250 FRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            R+R     E +  G    I+++ IPY V ++ L+ KIAEL+  K +  + D+RDES E+
Sbjct: 241 VRMRGTVTSEPMEGGDRERIIISTIPYNVNRATLVTKIAELVSTKEVEGISDLRDESDEN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K     P++++  ++  + +E  F +NM  L   + P+ M +  ++  ++ HR
Sbjct: 301 TRIVIELKRGEF-PEVIISKLYKKTALEASFGVNMLALD-NKRPKQMNMKEMINCYIDHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTE 425
           REV++RR++FR++  + R  IL+G  IA  N+D+ I IIR+          +  ++ L++
Sbjct: 359 REVIYRRTAFRLKKAEDRAHILEGYKIALDNLDDFIKIIRSSANRDEAKVRLQEKYPLSD 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            QV AIL+LRL  L  +E  +I+ E   LL   E++ S+L +  +  + I  E+ E+KE 
Sbjct: 419 RQVTAILDLRLYQLTGMERGKIEEEYAELLKLIEELRSILENEYKLLSIIKEELSELKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           ++            CE+   +    +  M  KE   + IS++G+I+          K   
Sbjct: 479 YTSPRK--------CEIVPYEGDISKADMTPKEGCFITISHKGFIKRVSDSEFRTQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID 595
             +   +  E D ++    A+T D I+    +G+ Y      L  G    +  +I  ++ 
Sbjct: 531 KGVQGGNTYEDDFVEHIFTANTHDTIMFFMNNGRVYVEKVYELPEGSRTSKGRSINNVLQ 590

Query: 596 LNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L   + I              L++ +  G       +      + G   + +   + +  
Sbjct: 591 LQKEEQIAAMICVKEITEDFNLVMCTKHGTVKKTNLAAYKNFRKGGIIGINIDEGDSLIT 650

Query: 653 VVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT 710
           V        + +V    K + F    + E  R  +GVR     +   +  +     E   
Sbjct: 651 VKLTNRDSELVIVTHLGKSIRFHESDLREQGRATRGVRGVKLSEKDYAQAMEVVDNESAL 710

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            I        +        L KRGG G +  K 
Sbjct: 711 LIC-GINGQGKRTTFDEFPLQKRGGSGVIAAKT 742



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/414 (11%), Positives = 128/414 (30%), Gaps = 20/414 (4%)

Query: 306 AEDVRIVLFPKNRSLDPDLLMES-IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK-- 362
             D  I +   + + D   +     + LSD +    L++ +  +  + +    +   +  
Sbjct: 389 NLDDFIKIIRSSANRDEAKVRLQEKYPLSDRQVTAILDLRLYQLTGMERGKIEEEYAELL 448

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           + +   R +L           +   E+ +                 ++    P      +
Sbjct: 449 KLIEELRSILENEYKLLSIIKEELSELKEKYTSPRKCEIVPYEGDISKADMTPKEGCFIT 508

Query: 423 LTENQ-VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           ++    +  + +   R   +    +     +    +  +     N+       +      
Sbjct: 509 ISHKGFIKRVSDSEFR--TQKRGGKGVQGGNTYEDDFVEHIFTANTHDTIMFFMNNGRVY 566

Query: 482 VKEIF----SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT--VVISNRGWIRSLKS 535
           V++++       T  GR      ++ + ++      + E       V+ +  G ++    
Sbjct: 567 VEKVYELPEGSRTSKGRSINNVLQLQKEEQIAAMICVKEITEDFNLVMCTKHGTVKKTNL 626

Query: 536 HSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            +        +  ++  EGDSL      +    +++++  GK+      +L         
Sbjct: 627 AAYKNFRKGGIIGINIDEGDSLITVKLTNRDSELVIVTHLGKSIRFHESDLREQGRATRG 686

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++  + L+         V D+   LL+    G        E     R G   +   +   
Sbjct: 687 VRG-VKLSEKDYAQAMEVVDNESALLICGINGQGKRTTFDEFPLQKRGGSGVIAAKTAGV 745

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              +     D + ++ +N + +  S+  I  + R  KGVR  +   G +   I 
Sbjct: 746 AGALAVRESDEIMMLTKNGQAVRTSVKDINLIGRITKGVRCINLNKGDVLLGIA 799


>gi|308050987|ref|YP_003914553.1| DNA topoisomerase IV subunit A [Ferrimonas balearica DSM 9799]
 gi|307633177|gb|ADN77479.1| DNA topoisomerase IV subunit A [Ferrimonas balearica DSM 9799]
          Length = 754

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 264/757 (34%), Positives = 431/757 (56%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ N +  E V+   LR   E+ YL YA+  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MTDHNAMSLEGVEQQPLRQFTEQAYLNYAMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ +E++L  + +  V++   ++    EP + PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTESRLSRFSEVLLSELGQGTVEWGPNFDGTLKEPKLLPSRLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A   L++NP+  +E+L+ ++ GPD+PT   I+  R  I + Y+
Sbjct: 181 VGMATDIPPHNAREVAAACAHLLENPKAELEELMGFVQGPDYPTAAEIITPRTEIAKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA + V +       IV+T +P+QV  S+LIE+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVKMRAVYQVIDGE-----IVITALPHQVSGSKLIEQIASQMQAKKLPMVTDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D +M  +F  +D+E  + +N+N+L +   P V  L  IL 
Sbjct: 296 SDHENPVRLVIVPRSNRIDLDQVMAHLFATTDLEKSYRVNLNMLGLDNRPGVRDLKSILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL GLLIA+LNIDE+I IIR+ED+PK  ++SRF 
Sbjct: 356 EWLVFRTDTVRRRLQYRLDKVLARLHILDGLLIAFLNIDEVIEIIRSEDEPKAALMSRFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL ++LR L KLEE +I++E + L AE++K+ ++L S ++    +  E+   
Sbjct: 416 LSEKQAEAILEIKLRQLAKLEEIKIRAEQEELAAERDKLQTILGSERRLKTLVKKELLAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   A   T Q+     EP+TVV+S + W R  K H V+  +
Sbjct: 476 AETYGD-----DRRSPLVERGEARALTEQEL-TPAEPVTVVMSQKAWGRCAKGHDVEPES 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++ GD         +   ++ L + G+AYT    +L S R  GE +    +L     +
Sbjct: 530 LSYRAGDGYLAHARGRSNQPVVFLESSGRAYTTEPHSLPSARSQGEPLSGRFNLVAGARL 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               +       L+ +  G  F+ +  E+++  + GK  L V +  ++    ++     D
Sbjct: 590 EHVVMGQDDDHYLMATDAGYGFVGQFKEMVSRNKAGKALLTVPTGAEILPPQRIRDQAND 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            +  +    ++L+F + Q+P +++GKG ++                 +          + 
Sbjct: 650 RLLAISTEGRMLLFPLSQLPVLAKGKGNKIIGIPSERAKSREEYVKHLVVLPQGAQITLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  +LG+RG  G+ +P+G  R  K 
Sbjct: 710 AGKRKLTLKSSDLEHYLGERGRRGNKLPRGLQRVDKV 746


>gi|221133675|ref|ZP_03559980.1| DNA topoisomerase IV subunit A [Glaciecola sp. HTCC2999]
          Length = 788

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 253/757 (33%), Positives = 422/757 (55%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN  T+ ++ V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMS++G
Sbjct: 1   MSNEVTINQDGVEQLPIRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSANAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSRFSEVLLAELGQGTADWSPNFDGTLKEPKVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DN    + +LLE++ GPD+PT   I+  +  I + Y 
Sbjct: 181 VGMATDIPPHNVRELANACSLLLDNSRTELGQLLEHVQGPDYPTDAEIITPKADIQKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +        +  +++T +P+Q    +++E+IA  +  K++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYT-----EENGEVIITALPHQASGGKILEQIAGQMQTKKLPMVSDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVVTPRSNRVDIEQLMAHLFATTDLEKNYRVNINMIGLDGRPQVKDLKSILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ D+PK  +++RF 
Sbjct: 356 EWLVFRRDTVTRRLQYRLDKVLARLHILEGLMIAFLNIDEVIEIIRHHDEPKQELMARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK E D L  E++ +   L S ++    I  E+   
Sbjct: 416 LSDTQAEAILELKLRHLAKLEEMKIKGEQDELSKERDALQLTLGSDRRMKTLIKKELMAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   +   +   + ++  +  EP+TVVIS +GW R  K H VD   
Sbjct: 476 AEKYGD-----DRRSPIVQRGESKALSEKEL-VPSEPVTVVISAKGWARCAKGHDVDAPN 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K  DS   +    +    +   + G+ ++  A  L S R  GE +    ++   +  
Sbjct: 530 LSYKGDDSYLASAKGRSNQPAVFFDSSGRTFSCDAHTLPSARSQGEPLTGRFNMVSGEQF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + + + K L+ S  G  F+   +++++  + GK +L + S  K+   V V     D
Sbjct: 590 EHVIMANESQKFLMASDAGYGFVGSFADMLSKNKAGKAYLSLPSAAKVLTPVLVNDIETD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
               +    ++L+F +  +P + +GKG ++ +               +          I 
Sbjct: 650 RCLAISNEGRMLLFPLRDLPSLGKGKGNKIINIPSAKAKTREEFIVALAIVPNGCDVKIL 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRGMTLKASDLEHYYGERGRRGNKLPRGLQRVDGV 746


>gi|186680575|ref|YP_001863771.1| DNA gyrase subunit A [Nostoc punctiforme PCC 73102]
 gi|186463027|gb|ACC78828.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102]
          Length = 871

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 246/798 (30%), Positives = 383/798 (47%), Gaps = 64/798 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +E +  + LR  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTSQERIIPIDLRTEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL++G GNFG++D D  AA R
Sbjct: 62  PFKKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +    +L  ++ + VDF D ++    EP V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALTSAGLLHDIEYETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +A +A+I NPEI+  +L++Y+ GPDFPTG  I+    +I E+Y  GRG 
Sbjct: 182 NIPPHNLGELIDALVAVIHNPEITDLELMQYVHGPDFPTGAQIL-GTSAIREAYTTGRGS 240

Query: 250 FRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E V          I++TE+PYQ  K+ LIEKIAE++  KR+  + DIRDES
Sbjct: 241 ITMRGVANIETVEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +++  + ++  F  NM  L     PQV+ L   L  +L
Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNS-EPQVLTLKQFLSVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA   +D II +IR+           ++ + 
Sbjct: 360 DFRIESIARRTRYELRKAEERDHLLQGLLIALSQLDPIIVLIRHAPDAPTAKGELITTYG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E D L A+   +  +L   ++    I  E+ ++
Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHDELQAKITDLQDILARRERVLEIIETEVAQL 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K  F+                R   A  +  ++  E   +         +    +   +A
Sbjct: 480 KTNFATPRRTVILPGEGELDDRDLIANEKAIILVTEQGYIKRMPVNTFEAQSRATRGKAA 539

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
              K+ D+++  L     D IL  S  G  Y L A  +   S    G  I  ++ +   +
Sbjct: 540 AKVKDDDTIEHFLTCCDHDSILFFSERGVVYCLRAYQIPASSRTSRGTPIVQMLPIPKEE 599

Query: 601 DIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I +    D       L++++  GN    E +        G   + +   ++++ V +  
Sbjct: 600 KITSIVPVDEFSSEEYLVMLTKGGNIKKTELAAFSHIRANGLIAISLEEGDQLRWVRRAR 659

Query: 658 -GDHVAVVGENRKLL--IFSIDQIPEMSRG-KGVRLQSYKDGGI---SDVICFKICEGLT 710
             D V +   N   +    + +Q+  +SR  +GV+    K+       D++   I E L 
Sbjct: 660 VEDSVIIGSRNGMAINFRCNHEQLRPLSRATRGVKAMKLKNKDELVGMDILPAAILETLD 719

Query: 711 WIDSAG------------------------------------------RSYNRSENDLLG 728
            +  A                                             Y +       
Sbjct: 720 IVTEAETEDIEAIETIETEDIEITETTEESAEVPSTGIVGPWVLVITMGGYGKRVPVAQF 779

Query: 729 WLGKRGGVGSLVPKGFPR 746
            L  R G G +  K   R
Sbjct: 780 RLQNRAGQGLMATKFKNR 797



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 8/102 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVVKV--TGDHVAVVGE 666
           +LV++  G    V  ++     R G+  +        +++K+  +  V    D + +V  
Sbjct: 762 VLVITMGGYGKRVPVAQFRLQNRAGQGLMATKFKNRKTKDKLATLRIVNNDDDEIMMVTN 821

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
              ++  +++ I   SR   GVR+Q   +      +     +
Sbjct: 822 RGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGVAIVPPD 863


>gi|308188118|ref|YP_003932249.1| topoisomerase IV subunit A [Pantoea vagans C9-1]
 gi|308058628|gb|ADO10800.1| topoisomerase IV subunit A [Pantoea vagans C9-1]
          Length = 757

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 273/752 (36%), Positives = 446/752 (59%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L ++  + ++L    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   SELTQDGAERLALHTFTEDAYLKYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AEL+L  + +  V+++  ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLGELGQGTVEYQPNFDGTLQEPKILPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA+ALID P+ ++E+LL+ + GPD+PT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNLREVAQAAIALIDAPKTTLEQLLDIVQGPDYPTEAEIITPRDEIRKIYQTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R RA W  EE       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +
Sbjct: 242 SIRQRAVWKKEEGE-----VVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRVDLDQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLHEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R+  + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E 
Sbjct: 357 FRRDTVKRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIEIIRTEDEPKPVLMSRFGISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q ++IL L+LR L KLEE +I+ E  +L  E++++ + L S ++    +  E++     +
Sbjct: 417 QAESILELKLRHLAKLEEMKIRGEQADLEKERDQLQATLASERKMNTLLKKELQADSASY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+  CE   A   +  +  +  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GDE-----RRSPLCEREEAKALSETEL-VPSEPVTIVLSQMGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS   A    +   +  + + G++YTL   +L S RG GE +   +       +    
Sbjct: 531 AGDSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVVEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVV 664
           +     +LL+ S  G  FI   S++I+  R GK  L +    ++   + V    D +  +
Sbjct: 591 MEPDDQRLLMASDAGYGFICTFSDLISRNRAGKALLTLPDNARVMTPMAVHHEDDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKICEGLTW-IDSAGRS 718
            +  ++L+F + ++P+MS+GKG ++ S        G         +  G    +    R 
Sbjct: 651 TQAGRMLMFPVGELPQMSKGKGNKIISIPSAEAAAGQDKLAWLMILPPGSAITLHVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 +L  +   RG  G+L+P+G  +  + 
Sbjct: 711 MLLRSEELQKFRADRGRRGTLLPRGLQKIDRV 742


>gi|283457095|ref|YP_003361658.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
 gi|283133073|dbj|BAI63838.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
          Length = 882

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 230/767 (29%), Positives = 375/767 (48%), Gaps = 32/767 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N     +++ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+I+AM + G   
Sbjct: 27  ENVDHHGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRP 86

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             +F K AR+VG+V+G+ HPHGD ++YD+LVRL Q ++ RYPL  GQGNFG+   D AAA
Sbjct: 87  DRSFNKCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAA 146

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +++ ++ED VDF+  Y+ +  EP V P++ PNLL NG+SGIAVGMA
Sbjct: 147 PRYTETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMA 206

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYR 244
           T+IP HN++E+ E     + NP  + ++    L+  I GPDFPTG  I+   + I ++YR
Sbjct: 207 TNIPPHNLREVAEGVEWFLKNPHATNDELLNALMARIKGPDFPTGAQIL-GTKGIEDAYR 265

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA   VEE+  G  C+VVTE+PYQ     L  KIAELI   ++  + D+RDE
Sbjct: 266 TGRGSITMRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIAELIKDGKVTGIADLRDE 324

Query: 305 SA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++    + ++    R   P +++ +++  + ++  F  NM  +    VP+ + LD  ++ 
Sbjct: 325 TSGRTGQRLVIVLKRDASPKVVLNNLYKHTQLQENFSANMLAIVD-GVPRTLSLDAFVRH 383

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSR 420
           W+ H+ +V+ RR+ +R++  +    IL+GLL A   +DE+IA+IR            +  
Sbjct: 384 WVDHQMDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSGLMEF 443

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q  AILN++LR L  LE  +I+   D L+    + ++++ S  +Q   I+ E+ 
Sbjct: 444 LQIDEAQAQAILNMQLRRLAALERQKIQDRHDELMRMIAEYNAIIASETRQREIISEELG 503

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV------ISNRGWIRSLK 534
           E+   +        RRT        D +       E+  +T+        +     RS  
Sbjct: 504 EIVNRYGDE-----RRTQIMYGYNGDMSMEDLIPEEEVVVTITRGGYIKRTRSDQYRSQH 558

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +     +  D ++      T   IL  +  G+ Y      L       +   I  
Sbjct: 559 RGGKGIKGASLRGDDVVEHFFVTTTHSWILFFTNLGRVYRAKGYELQEAGRDAKGQHIAN 618

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++    + I        Y+    L++ +  G       S+   N   G   + +   ++
Sbjct: 619 LLEFQGGEHIAQVMELKSYEDAEYLVLATRGGMVKKSRLSDYDTNRTAGLIAINLREGDE 678

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +     V+  D + +V  N   L F  D   +  M R   GV    +++G    +    +
Sbjct: 679 VVSAFTVSAQDDILLVSRNGMSLRFHADDASLRPMGRSTSGVTGMKFREGDEL-ISANVV 737

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            EG          Y +  +     +  R G G  V K     G  + 
Sbjct: 738 TEGSFVFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVEDRGALVG 784



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 76/216 (35%), Gaps = 14/216 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTD 561
             ++    E     V+ +  G ++  +    D +        + +EGD +  A      D
Sbjct: 630 QVMELKSYEDAEYLVLATRGGMVKKSRLSDYDTNRTAGLIAINLREGDEVVSAFTVSAQD 689

Query: 562 RILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
            ILL+S +G +    A +      G   +    +      ++++A V      + VV+  
Sbjct: 690 DILLVSRNGMSLRFHADDASLRPMGRSTSGVTGMKFREGDELISANVVTEGSFVFVVTEG 749

Query: 621 GNAFIVEESEIIANTRKG--KTFLKVSSE--EKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G A      E     R G      K+  +    +  ++    D V VV  + K++  +++
Sbjct: 750 GYAKRTSVDEYRVQGRNGFGIKVAKLVEDRGALVGGLIVDEEDEVLVVMASGKVVRSNVN 809

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           ++P   R   GV     K G    +I     +    
Sbjct: 810 EVPAKGRDTMGV--IFAKPGKGDSIIGVARNQDRQL 843


>gi|258543011|ref|YP_003188444.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634089|dbj|BAI00065.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637149|dbj|BAI03118.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640201|dbj|BAI06163.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643258|dbj|BAI09213.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646313|dbj|BAI12261.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649366|dbj|BAI15307.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652352|dbj|BAI18286.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655410|dbj|BAI21337.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-12]
          Length = 742

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 371/737 (50%), Positives = 517/737 (70%), Gaps = 9/737 (1%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            +S +      +++   L  AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++
Sbjct: 8   QMSET----AGHIEETKLAEALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLVYAMHQL 63

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            LD  + FKK AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG++DGD
Sbjct: 64  RLDPASGFKKCARVVGDVIGKFHPHGDASVYEALVRLAQDFAARYPLVEGQGNFGSVDGD 123

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           + AA RYTEAR+T+VA  +L G+++DAVDFR TY+ E+ EPVV PS FPNLLANG +GIA
Sbjct: 124 NPAAMRYTEARLTEVAVALLDGIEDDAVDFRPTYDGEEQEPVVLPSAFPNLLANGAAGIA 183

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMATSIP HN  E+C AA  L+  P  + ++LLE + GPDFPTGG+IVE  ++I+++Y 
Sbjct: 184 VGMATSIPPHNAAEVCAAAALLVRKPSATTQELLELMPGPDFPTGGLIVEDSDAILQAYE 243

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG FR+RARW VE+   G+W IVVT+IPYQVQKSRLIE+IA+L+  K++PLL DIRDE
Sbjct: 244 TGRGSFRMRARWEVEQGRFGTWHIVVTQIPYQVQKSRLIEQIADLLDQKKLPLLGDIRDE 303

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +++R+VL PK R ++P++LME++F  + +E+RF LNMNVL   R P VM L  +++ W
Sbjct: 304 STDEIRLVLEPKTRGIEPEVLMETLFRATPLESRFGLNMNVLGADRSPGVMGLKQVIQAW 363

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L HR EVL RRS  R+ A++RR+EIL G L  YLN+D++I IIR ED  K  +++ F LT
Sbjct: 364 LDHRHEVLERRSRHRLTAVERRLEILSGFLAVYLNLDKVIRIIREEDDAKASLIATFKLT 423

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +++LN+RLRSLR+LEE +I+ E D L AEK  + +LL+S KQ+W  I  E+  + +
Sbjct: 424 DLQAESVLNMRLRSLRRLEEMEIRKEHDALSAEKAALMALLDSEKQRWKTIERELTGMIK 483

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            F K     RR T        D + +++  +E+EP+T+++S +GW+R++K H+VDL    
Sbjct: 484 AFGKGRLGERRSTILSAPKPVDISVVEE--VEREPLTMILSQKGWVRAVKGHNVDLENQK 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           FKEGD+LK+A+   TTDR+   +TDG+AYT+   +L  GRG G+ I+LLIDL++++D++ 
Sbjct: 542 FKEGDALKLAIPCQTTDRLCFFATDGRAYTVKGADLPRGRGDGQPIRLLIDLSNDEDLLA 601

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
            F  +   + LV SS G   +VEE  ++A  R G+  L +   E  ++ V   GDHVAVV
Sbjct: 602 VFPIEDGKRRLVASSAGRGMLVEEEALVAEKRSGRQVLNLKEGEFARVCVPAEGDHVAVV 661

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           G+NR+ LIF ++Q+P M+RG GV LQ Y DGG+   + F   +GL W    G +  R   
Sbjct: 662 GDNRRFLIFPLEQLPVMARGLGVALQKYSDGGLRQAVVFTAADGLHW---PGTARIRQFA 718

Query: 725 DLLGWLGKRGGVGSLVP 741
           DL  W+ +R  VG + P
Sbjct: 719 DLQDWVSRRAAVGKVAP 735


>gi|325066317|ref|ZP_08124990.1| DNA gyrase subunit A [Actinomyces oris K20]
          Length = 893

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 243/777 (31%), Positives = 396/777 (50%), Gaps = 43/777 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +N  V E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 15  TNAPVPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 74

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            A+F KS+RIVG+V+G  HPHGD ++YD+L RL Q +  RYPL++GQGNFG       AA
Sbjct: 75  TASFSKSSRIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAA 134

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +L+ +DED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMA
Sbjct: 135 PRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMA 194

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYR 244
           T IP HN++E+   A   +++P+ S E+    L+E I GPDFPTG  I+  R  I ++YR
Sbjct: 195 TRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYR 253

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE
Sbjct: 254 TGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDE 312

Query: 305 SA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++    + ++    R     +++ +++  + ++  FP NM  L    VP+ + LDG ++ 
Sbjct: 313 TSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVD-GVPRTLSLDGFVRH 371

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           W+AH+ +V+ RRS FR++  + R+ IL+GLL A   +D +IA+IR     +         
Sbjct: 372 WVAHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMGL 431

Query: 423 --LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q +AIL+L+LR L  LE  +I+ E + L A  + +  ++ S ++Q   ++ E+ 
Sbjct: 432 LDVDEAQAEAILSLQLRRLAALERLKIQEESEELRARVKDLREIIASPERQRGIVSDELA 491

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-- 538
           E+ E +        RRT              + +I +E + V I+  G+ +  ++ S   
Sbjct: 492 EIVEKYGDE-----RRTRIVPFDGEMS---MEDLIPEEDVVVTITRSGYAKRTRTDSYRS 543

Query: 539 ------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AI 590
                  +     +E D +       T   +L  +  G+ Y      L  G    +   +
Sbjct: 544 QHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDSKGQHV 603

Query: 591 QLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+     ++I        YD    L++ + +G       SE  +N   G   + +  +
Sbjct: 604 ANLLAFQPGEEIAQVMELQDYDQADYLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQD 663

Query: 648 -----EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGIS 698
                +++     + TG  + +V    + L F  D   +    R   GV    +++    
Sbjct: 664 EEGNYDELVSARLLSTGQDLLLVSRAGQSLRFHADDDTLRPTGRATSGVTGMRFREDDYL 723

Query: 699 DVICFKIC--EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +       +           Y +  N +   +  RGG+G  V       G  + +
Sbjct: 724 LAMDVVDPSWQDADLFVVTEGGYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGA 780


>gi|291558322|emb|CBL35439.1| DNA gyrase subunit A [Eubacterium siraeum V10Sc8a]
          Length = 878

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 243/782 (31%), Positives = 385/782 (49%), Gaps = 55/782 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   + E +L Y+++ +  RA+PD+RDG KPVHRRII+ M+E        ++K
Sbjct: 13  EKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A  VGEV+GK HPHGD SVYD+LVRLAQ F  RYPLI G GNFG++DGD  AAYRYTEA
Sbjct: 73  CAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L+ + +D +D+   Y+++  EP V P KFPNLL NG+ GIAVGMAT+IP H
Sbjct: 133 RMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+C+A +A +DNPE  IE++L+YI GPDFPTGG I+     I  +Y  GRG   +R 
Sbjct: 193 NLNEVCDAIVARMDNPECGIEEILQYIKGPDFPTGG-IIMGYSGIRSAYYTGRGKITLRG 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E G     I+VTEIPY V KS+L+E   +L+  KRI  + ++RDES +D   +++
Sbjct: 252 KAEIVEEG-NHSRIIVTEIPYMVNKSKLLEVTGQLMRDKRIEGISNLRDESDKDGMRIVY 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++  +++  ++  + ++    + M  L     P+ + L  IL  ++A +++++ R
Sbjct: 311 ELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALV-NGEPKQLTLLEILDNYIAFQKQIITR 369

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R++F ++    R  IL+G L+A  NIDE+I+I+R+    +                    
Sbjct: 370 RTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQ 429

Query: 416 ----------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            L+E Q DAI+ +RL  L  LE  ++ SEL  ++ +      +L
Sbjct: 430 RAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDIL 489

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S ++    I  EI  +KE +        RRT    VS        + +I +E   +  +
Sbjct: 490 SSDERVKEIIKEEITAIKEKYGDE-----RRTAIEPVSGE---VDIEDLIPEEECVLTYT 541

Query: 526 NRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           N G+I+          K     +S +  +E D ++    + T D IL ++  G  Y L  
Sbjct: 542 NIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKC 601

Query: 578 GNLLS--GRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII 632
             +     +  G  I  L+ L+  + I        +      + V+  G        +  
Sbjct: 602 YEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRTPLYDFR 661

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
              + G   + ++  +++       GD  + V       + FS D+I  M R   GVR  
Sbjct: 662 NVRKNGLRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSMGRLAAGVRAI 721

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             ++            + +  +    + Y R        +  RGG G    K     G  
Sbjct: 722 KLREDDYIVGAAKVYSDDMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKIRDDRGYV 781

Query: 751 LS 752
             
Sbjct: 782 CG 783



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/315 (15%), Positives = 93/315 (29%), Gaps = 22/315 (6%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             LT   +  I    +      +             E    D  ++S       I     
Sbjct: 536 CVLTYTNIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGN 595

Query: 481 EVKEI-FSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
             K   +       + R T        +      A ++ +   +    + ++  G I+  
Sbjct: 596 MYKLKCYEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRT 655

Query: 534 KSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +         L A+   EGD +  A        I++ +  G A      + +   G  
Sbjct: 656 PLYDFRNVRKNGLRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFS-EDKIRSMGRL 714

Query: 588 EAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
            A    I L  +  IV  A VY    ++L V+ KG   +   S+     R G        
Sbjct: 715 AAGVRAIKLREDDYIVGAAKVYSDDMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKI 774

Query: 647 EEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
            +    +  +  +   D V ++  +  ++    + +  M R   GVR+    D     V+
Sbjct: 775 RDDRGYVCGIRSIQADDDVILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDR--VV 832

Query: 702 CFKICEGLTWIDSAG 716
            F   E     D   
Sbjct: 833 TFTRTEHDETADIEE 847


>gi|154253489|ref|YP_001414313.1| DNA gyrase subunit A [Parvibaculum lavamentivorans DS-1]
 gi|154157439|gb|ABS64656.1| DNA gyrase, A subunit [Parvibaculum lavamentivorans DS-1]
          Length = 965

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/850 (30%), Positives = 410/850 (48%), Gaps = 120/850 (14%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E +V  +++   +   YL YA+S I  RA+PD RDG KPVHRRI+ +M+E G D+   ++
Sbjct: 65  ERDVAPIAIEDEMRSSYLDYAMSVIVSRALPDARDGLKPVHRRILFSMNENGYDWNKPYR 124

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGDQS+YD+LVR+AQ F  R PL+ GQGNFG++DGD  AA RYTE
Sbjct: 125 KSARVVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLPLLDGQGNFGSVDGDPPAAMRYTE 184

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM + A  +L  +D++ +DF+D Y+  + EPVV P++ PNLL NG +GIAVGMAT+IP 
Sbjct: 185 VRMAKTAHALLNDIDKNTIDFKDNYDGTEREPVVLPAELPNLLVNGANGIAVGMATNIPP 244

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +ALIDNP+I+I++L+E++  PDFPTGGI++  R+    +Y  G+G   VR
Sbjct: 245 HNLGEVIDACIALIDNPDITIDELIEHVPAPDFPTGGIML-GRQGARLAYHTGKGSVVVR 303

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R   EEV +    I+++EIPYQV K+ ++EKIA+L+  KRI  + D+RDES  +   V+
Sbjct: 304 GRVEFEEVRKDRQAIIISEIPYQVNKASMVEKIADLVREKRIEGIADLRDESDRNGMRVV 363

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   PD+++  ++  S ++  F  NM  L     P++M L   L+ ++A R EV+ 
Sbjct: 364 VELRRDAVPDVVLNQLYRFSPLQQSFGCNMLALDH-GRPELMNLKQFLEIFVAFREEVIS 422

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------------------- 412
           RR+ F +     R  +L GL IA  NIDE+I +IR                         
Sbjct: 423 RRTKFELNKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPASARESLMARDWPARDIAPL 482

Query: 413 --------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                    +        ++E Q  AIL LRL+ L  L   +I  EL  L    E   S+
Sbjct: 483 IALIDDPRHQLREDGTIRMSEEQARAILELRLQRLTALGRDEIGDELKGLGERIEDYLSI 542

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L S  +  + +  E+  +K  F+       RRT   E   ++     + +I++E + V +
Sbjct: 543 LRSRARVLDIMRTELTAIKAEFATP-----RRTEIAE---SESDFEDEDLIQREDMVVTV 594

Query: 525 SNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           S++G+I+          +      S +  K+ D +     A+T   +L  S+ G  Y L 
Sbjct: 595 SHQGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPMLFFSSTGMVYKLK 654

Query: 577 AGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEE 628
                  + +  G+A+  ++ L+H + I T               ++  + KG+    + 
Sbjct: 655 VWRLPQSTPQARGKAMINILPLDHGEYITTVMPMPEDEASWDSLHVMFATRKGSVRRNKL 714

Query: 629 SEIIANTRKGKTFLKV---SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS-- 682
           S+ +   R GK  +K     +++ +  V   T  D V +   N + + F + ++   S  
Sbjct: 715 SDFVQINRNGKIAMKFEGDDADDAIVGVQICTEEDDVLLTAANGRCVRFPVTEVRVFSSR 774

Query: 683 RGKGVRLQSYKDGGISDVIC------FKICEGLTWI--------DSAGRS---------- 718
           +  GVR     D      +           E   ++          +G            
Sbjct: 775 KSTGVRGIRLGDDDKLIAMSIMRHVDVTPAEARAYLKQAAAMRRAVSGEGEEPEAEIVEA 834

Query: 719 ----------YNRSEN--------------DLLGWLGKR-----------GGVGSLVPKG 743
                        S                      GKR           GG G +    
Sbjct: 835 EEGEEEAAEEMTLSTERYSELGAREQFVLTVSEKGFGKRSSSYDYRTSGRGGKGIIAMAV 894

Query: 744 FPRSGKFLSS 753
            PR+G  ++S
Sbjct: 895 TPRNGNLVAS 904



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVT-GDHVAVVGE 666
              +L VS KG        +   + R GK  + +        +     V   D + +V +
Sbjct: 859 EQFVLTVSEKGFGKRSSSYDYRTSGRGGKGIIAMAVTPRNGNLVASFPVDVQDQIMLVTD 918

Query: 667 NRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
             +L+   +D +    R  +GV +           +
Sbjct: 919 AGQLIRCPVDDVRAAGRATQGVTIFRTAPDERVVSV 954



 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 2/93 (2%)

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V  V E       S        RG KG+   +      + V  F +      +       
Sbjct: 862 VLTVSEKGFGKRSSSYDYRTSGRGGKGIIAMAVTPRNGNLVASFPVDVQDQIMLVTDAGQ 921

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                        R   G  + +  P   + +S
Sbjct: 922 LIRCPVDDVRAAGRATQGVTIFRTAP-DERVVS 953


>gi|269993789|dbj|BAI50571.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica]
          Length = 764

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 266/758 (35%), Positives = 442/758 (58%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++TL+ + ++  ++    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L+ + +  VD+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPLVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+D P+  +++LLE +  PD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELDELLELVHAPDYPTDAEIITPKADIHKIYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +           IV+T +P+Q   ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYT-----EEHGDIVITALPHQCSGAKVLEQIAAQMNAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIVPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRSILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR   R+  +  R+ IL+GLL A+LNIDE+I IIR EDKPKPV++ RF 
Sbjct: 356 EWLTFRRETVRRRLQHRLDKVLARLHILEGLLAAFLNIDEVIEIIRTEDKPKPVLMERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I+ E D L  E++K++  L S ++    +  EI+E 
Sbjct: 416 LTDTQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLEQTLGSDRRMSTLLKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            +++        RR+   E   A KA  ++ +I  E +TVV+S++GW R  K H +D+  
Sbjct: 476 ADMYGD-----DRRSPVIERVEA-KALSEKDLIPSESVTVVLSDKGWARVGKGHDIDVEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD  K +    +    + L + G+A+   A +L S R  GE +    +L    + 
Sbjct: 530 LNYRAGDEYKASAKGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTTGANF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +    LL+ S  G  FI +  ++++  + GK  + V     +   ++V     D
Sbjct: 590 EHVVMGEDNQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGILLSPIRVNDVATD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI------SDVICFKICEGLTWID 713
           +   +    ++L+F +  +P++ +GKG ++ S     +        V+          + 
Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  R      +DL  + G+RG  G+ +P+G  R  + +
Sbjct: 710 AGKRKLTLKPSDLEHYHGERGRRGNKLPRGLQRVDEAV 747


>gi|114707076|ref|ZP_01439975.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506]
 gi|114537626|gb|EAU40751.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506]
          Length = 950

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 248/833 (29%), Positives = 396/833 (47%), Gaps = 110/833 (13%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM EMGL     ++KSA +V
Sbjct: 27  VSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHEMGLTSTRPYRKSAGVV 86

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD ++YD+LVR+AQ +  R  LI GQGN+G+IDGD  AA RYTE R+ ++
Sbjct: 87  GEVMGKYHPHGDSAIYDALVRMAQDWSLRDRLIEGQGNYGSIDGDPPAAMRYTECRLRKI 146

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++ +L  +D++ VDF++ Y+  + EPVV P+ FPNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 147 SDTLLADIDKETVDFQENYDGREQEPVVLPAGFPNLLVNGSGGIAVGMATNIPPHNLGEV 206

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  +ALIDNP I++ +++E I GPDFPTG I++  +  I  +Y  GRG   +R +   E
Sbjct: 207 IDGCVALIDNPAITLPEMMEIIPGPDFPTGAILL-GKAGIQSAYSTGRGSLLMRGKVHTE 265

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +      I+VTE+PYQV K+ +IEK+AEL+  KRI  + DIRDES  +   V+    R 
Sbjct: 266 TIRGDREAIIVTEVPYQVNKATMIEKMAELVRDKRIEGISDIRDESDREGYRVVVELKRD 325

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              D+++  ++  + ++T F  NM  L+ G  P+ + L  +L  ++A R +V+ RR+ + 
Sbjct: 326 ASADVILNQLYRFTPLQTSFGANMVALN-GGKPEQLTLMDMLSAFVAFREDVVNRRTKYL 384

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------------------- 419
           ++    R  +L GL IA  NIDE+I +IR    P                          
Sbjct: 385 LRKARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTREWDAKDVAPLVRLIDD 444

Query: 420 ---------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     + L+E Q  AIL+LRL+ L  L   +I  EL+ + AE +    +L+S  +
Sbjct: 445 PRHRISDQGTYRLSEAQARAILDLRLQRLTALGRDEIGDELEKIGAEIKDYLEILSSRTR 504

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E+  +++ F+       RRT   E          + +I +E + V +S+ G+I
Sbjct: 505 VMQIIKDELTAIRDEFATP-----RRTELSE---GAADLEDEDLIPREDMVVTVSHGGYI 556

Query: 531 RSLKSHSVDLSALH---------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           + +                      + DS+     A+T   +L  S+ G  Y      L 
Sbjct: 557 KRVPLSVYRSQRRGGKGRSGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVYKEKVWRLP 616

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIA 633
             + +G G+A+  L+ L  N+ I +     +         ++  +++G     + S+   
Sbjct: 617 LTTPQGRGKALVNLLPLEKNERITSILPLPNEEEAAERTNVMFATTRGTVRRNKLSDFTN 676

Query: 634 NTRKGKTFLKVSSE-EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRL 689
             R GK  +K+  E + +  V      D V +   + + + F    +     R   GVR 
Sbjct: 677 VNRNGKIAMKLDDEQDSILGVATCSEDDDVLLTASSGQCIRFPTTDVRVFAGRNSVGVRG 736

Query: 690 QSY-KDGGISDVICFKICE----------------------------------------- 707
            S  K   +  +   +  +                                         
Sbjct: 737 ISLGKSETVVSMAILRHVDASAEERATYLKMRRAVEGDTNGESDSDEEAVADVAIDQERY 796

Query: 708 ------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG--FPRSGKFLS 752
                     +  +   Y +  +        RGG G          + G  ++
Sbjct: 797 AELGAREEMILTVSEYGYGKRSSSYEFRTSGRGGKGIRATDTNRLDKLGALVA 849



 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 16/128 (12%)

Query: 597 NHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF-----L 642
           + +++ V     D             +L VS  G        E   + R GK        
Sbjct: 780 DSDEEAVADVAIDQERYAELGAREEMILTVSEYGYGKRSSSYEFRTSGRGGKGIRATDTN 839

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           ++     +     V   D + +V +  +++   +D I    R   GV +    DG     
Sbjct: 840 RLDKLGALVAGFPVENEDQLLLVTDRGQVIRVPVDGIGMKGRATGGVTIFRTADGERVVS 899

Query: 701 ICFKICEG 708
           +     +G
Sbjct: 900 VERIPDQG 907



 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLV 653
           L+    +V  F  ++  +LL+V+ +G    V    I    R   G T  + +  E++  V
Sbjct: 841 LDKLGALVAGFPVENEDQLLLVTDRGQVIRVPVDGIGMKGRATGGVTIFRTADGERVVSV 900

Query: 654 VKVTGD 659
            ++   
Sbjct: 901 ERIPDQ 906


>gi|56696919|ref|YP_167281.1| DNA gyrase subunit A [Ruegeria pomeroyi DSS-3]
 gi|56678656|gb|AAV95322.1| DNA gyrase, A subunit [Ruegeria pomeroyi DSS-3]
          Length = 891

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 261/833 (31%), Positives = 405/833 (48%), Gaps = 109/833 (13%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 5   VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNGHDKPYRKSARPV 64

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 65  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 124

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 125 AAFLLSDIDKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 184

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALID+P+++ E+L++Y+ GPDFPTGG ++  R    ++Y  GRG   +RA+  VE
Sbjct: 185 VDATLALIDDPDLTSEQLIDYVPGPDFPTGG-VMLGRSGARKAYLEGRGSVIIRAKTRVE 243

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + I+V EIPYQV K+ +IEKIAE +  KRI  +  ++DES  +   V+    R 
Sbjct: 244 ELRKDRYAIIVDEIPYQVNKATMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELKRD 303

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  S M+T F  NM  L+ G  P+ + L   L  ++  R EV+ RR++  
Sbjct: 304 ATPEVVLNQLYRFSPMQTSFGCNMLALN-GGRPEQLTLRRFLTCFIDFREEVVARRTAHD 362

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------------ 415
           ++    R  +L GL +A  N+DE++A IR+                              
Sbjct: 363 LRKARERSHVLCGLAVAVSNVDEVVATIRSSADAADAREKLMTRRWPAADIAAYLRLIDD 422

Query: 416 -----VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++LTE Q  AIL+LRL+ L +L   ++  EL+ L  + ++   +L S ++
Sbjct: 423 PLSKMNEDGTYNLTEVQARAILDLRLQRLTQLGVKEVTDELEVLAGKIKEYLEILGSRER 482

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               IA E+REV+E F+       RRT   + S   +    + +IE+E + V +++ G+I
Sbjct: 483 IMGIIADELREVREQFAVP-----RRTEIVDWSGDME---DEDLIEREDMVVTVTSGGYI 534

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 535 KRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 594

Query: 583 --GRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
               G G+AI  ++ +     I      D         +++  +S G+      S+    
Sbjct: 595 SGRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWDALQIVFATSAGDVRRNALSDFTNV 654

Query: 635 TRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRLQS 691
            R GK  +K+  + ++         D V ++  + + + F    +     R   GVR   
Sbjct: 655 KRNGKIAMKLPEDVELVNARICSEEDDVMLITNSGRAIRFPTTDVRVFKGRDSTGVRGIR 714

Query: 692 YKDGGISDVICF-------------------------------------KICEG------ 708
            ++G     +                                          EG      
Sbjct: 715 LQNGDRVVSMSVIRHFEAEPWERAEFIKRFRTILGAEMEDDAAETDEDAVEGEGVLTDER 774

Query: 709 --------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      +        +  +     +  RGG G       PR G   +S
Sbjct: 775 YQEMQDAQDLILTITVTGLGKLSSSHDYPVRGRGGQGVKAISAGPRGGTLAAS 827



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 51/220 (23%), Gaps = 13/220 (5%)

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
               +  R  +  +       + +        + V                    +    
Sbjct: 667 DVELVNARICSEEDDVMLITNSGRAIRFPTTDVRVFKGRDSTGVRGIRLQNGDRVVSMSV 726

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
               +              +  G      A         GE +         Q       
Sbjct: 727 IRHFEAEPWERAEFIKRFRTILGAEMEDDAAETDEDAVEGEGVLTDERYQEMQ------- 779

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAV 663
            D+   +L ++  G   +    +     R G+    +S+  +          +  D + +
Sbjct: 780 -DAQDLILTITVTGLGKLSSSHDYPVRGRGGQGVKAISAGPRGGTLAASFPVLMDDQIML 838

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
                + +   ++ I   SR   GVR+ +   G     + 
Sbjct: 839 ATSGGQSIRVPVEGISFRSRSAGGVRVFNTSKGEEVVSVA 878


>gi|269124012|ref|YP_003306589.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112]
 gi|268315338|gb|ACZ01712.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112]
          Length = 870

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 254/770 (32%), Positives = 411/770 (53%), Gaps = 39/770 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            + +  +    EE +    +   ++  YL Y++S I  RA+PD+RDG KPVHRRI++AM 
Sbjct: 29  EEIMKKTEMSNEELIY---IEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMD 85

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+ ++  + +KKSAR+VGEV+GK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+ID
Sbjct: 86  ELKMNHNSPYKKSARLVGEVLGKYHPHGDSAVYNSMVRMAQDFNTRYMLVDGHGNFGSID 145

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDSAAA RYTEARM+++AE +L  +++D +D+R  ++E   EP V P++ PNLL NGT+G
Sbjct: 146 GDSAAAMRYTEARMSKIAEEMLIDINKDTIDWRKNFDESLDEPTVLPARLPNLLLNGTTG 205

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +  +ALIDN +ISI++L+ +I GPDFPTGG I+  +  I  +
Sbjct: 206 IAVGMATNIPPHNLGELSDGIIALIDNRDISIDELITHIKGPDFPTGG-IIYGKSGIYSA 264

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ GRG  RV A+  +    +G   IV+TE+PYQV K+ LI++I EL+  K I  + D+ 
Sbjct: 265 YKTGRGKVRVSAKTEIITDKKGRQSIVITELPYQVNKANLIKRIGELVKDKIIVGISDLA 324

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D S  +   ++    +  + ++++  +   +D++T F + M  L     P+++ L  IL+
Sbjct: 325 DLSNLEGIRIVIDIKKGEEAEIVLNKLLKFTDLQTTFGIIMLALV-NNAPKILNLKEILE 383

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
           ++L HR +V+ R++ F +     R  IL+GL  A  +IDEII+IIR        K  +++
Sbjct: 384 KYLEHRYDVITRKTIFDLNKAKDRAHILEGLRKALDHIDEIISIIRGSKTRALAKESLIA 443

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F  TE Q DAIL++RL  L  L   +I +E D L+     ++ +L   ++++  I  E+
Sbjct: 444 KFEFTEIQTDAILDMRLHRLTGLAREEIDTEYDKLMLFITDLEDILAKDERKYAIIKEEV 503

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------ 533
            E+K+ +  +     RRT+             + +I+ E + V I+ RG+ + +      
Sbjct: 504 LELKQKYGDA-----RRTSI---ENDRYEINIEDLIKNEDVIVTITKRGYAKRMSLDSYK 555

Query: 534 --KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEA 589
             K     +S     E D LK    A T D +++ S  GK Y++    +     +  G+ 
Sbjct: 556 AQKRGGKGVSNTTTIEDDVLKDLFTAKTLDTLMVFSDKGKVYSIKVYEIPEVSKQARGKL 615

Query: 590 IQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           I  +I+L+ N+ I      D        L+ ++  G A   + SE     R GK  +   
Sbjct: 616 IGNIIELDENEKISVIIPVDEIENDNRDLIFITRNGIAKKTKISEFKTINRNGKIAISFK 675

Query: 646 SE-EKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            + +++K V   +G   D + +  +    + F  + I  M R   GVR            
Sbjct: 676 DDEDEVKFVGITSGSEKDEIFISTKGGMAVRFKEEDIRSMGRTAAGVRAIKLNSNDEVVS 735

Query: 701 ICF----KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                     + ++ +        +        + KRGG G        R
Sbjct: 736 ADVIYTDNNVDEMSVLSVTSLGIGKKTLLSEYNIIKRGGKGVKNYNLERR 785



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 21/156 (13%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----KL 614
             D I + +  G A      ++ S       ++ +   ++++ +    +Y         +
Sbjct: 691 EKDEIFISTKGGMAVRFKEEDIRSMGRTAAGVRAIKLNSNDEVVSADVIYTDNNVDEMSV 750

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---------MKLVVKVTGDH----- 660
           L V+S G       SE     R GK     + E +         +     +         
Sbjct: 751 LSVTSLGIGKKTLLSEYNIIKRGGKGVKNYNLERRSKEESEHHYVVYSTIIDPSDENSEN 810

Query: 661 --VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
             +  +     ++   I  +P + R  KGV++QS K
Sbjct: 811 MELVAISTTGTVIRIKIKDLPVVGRNSKGVKIQSLK 846


>gi|163760265|ref|ZP_02167348.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43]
 gi|162282664|gb|EDQ32952.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43]
          Length = 945

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 247/858 (28%), Positives = 409/858 (47%), Gaps = 121/858 (14%)

Query: 6   ISNSNTL---VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +++  T    +   ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM 
Sbjct: 1   MTDQKTPSGPITPGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMH 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G  +   + KS+RIVG+V+GK HPHGDQS+YD++VR+AQ +     LI GQGNFG+ID
Sbjct: 61  EGGYHWNRKYVKSSRIVGDVMGKYHPHGDQSIYDAMVRMAQHWSMGAMLIDGQGNFGSID 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE+R+ ++A  +++ +D+D VDF++TY+    EP V P++FPNLL NG  G
Sbjct: 121 GDPPAAMRYTESRLAKLAHEMIEDIDKDTVDFQETYDSSGREPKVLPARFPNLLVNGAGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+    +A++DNP I + +L++ I GPDFPT GII+  +  I ++
Sbjct: 181 IAVGMATNIPPHNLVEVVNGCMAIMDNPSIDLLELMQIIPGPDFPTSGIIL-GQAGIRQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           +  GRG   +R +  VE +      I++TE+PYQV KS +IEK+AEL+  KRI  + D+R
Sbjct: 240 FETGRGSVIMRGKVHVEPMRNDREAIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDLR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R  + D+++  ++  + +++ F +NM  L+ G  P++M L  +LK
Sbjct: 300 DESDRQGYRVVIELKRDANADVIINQLYRYTPLQSSFGVNMVALN-GGKPELMNLIDMLK 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---------- 412
            +++ R +V+ RR+ + ++    R  +L GL IA  NIDE+IA+IR              
Sbjct: 359 AFVSFREDVITRRTKYLLRKARERAHVLVGLAIAVANIDEVIALIRKAPDPATAREQLMT 418

Query: 413 -------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                               +      ++L+E Q  AIL LRL  L  L   +I  EL  
Sbjct: 419 RRWPAMDVEVLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELGK 478

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +  E +    +L S  +    +  E+  V++ F        RRT   E          + 
Sbjct: 479 IGEEIKDFLEILGSRIRVQQIVKDELIAVRDEFGVP-----RRTVIAE---GGPDMDDED 530

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+I+          +      S +  K+ D +     A+T   +L 
Sbjct: 531 LIAREDMVVTVSHAGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLF 590

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G  Y      L   +    G+A+  ++ L   + I +               ++  
Sbjct: 591 FSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEKGERITSIMPLPEDETSCGELDVMFS 650

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
           + +G     + S+ +   R GK  +K+    +++  V      D V +     + + FS+
Sbjct: 651 TKRGTVRRNKLSDFVQVNRNGKIAMKLDSDGDEILNVETCNELDDVLLTTALGQCIRFSV 710

Query: 676 DQIPEM-SRGK-GVRLQSY--------------------------------------KDG 695
           D +     R   GVR  +                                       ++G
Sbjct: 711 DDVRVFAGRNSVGVRGINLGQGDTIISMTIVHHVDAEASERAAYLKRAMAERRAAIGEEG 770

Query: 696 GISDVICF---KICEGLT--------------WIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            + +V       + +G                 +  + + Y +  +     +  RGG G 
Sbjct: 771 DVEEVALVGEDAVEDGELSDERYAELKAREQFILTVSEKGYGKRSSSYEFRISGRGGKGI 830

Query: 739 LVPKGFPRS---GKFLSS 753
                  ++   G  +++
Sbjct: 831 RATDTS-KTGEIGPLIAA 847



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        E   + R GK        K      +     V  GD + +V
Sbjct: 800 EQFILTVSEKGYGKRSSSYEFRISGRGGKGIRATDTSKTGEIGPLIAAFPVEPGDQIMMV 859

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
            +  +++   +  I   SR  KGV + +         +
Sbjct: 860 SDGGQVIRVPVGGIRMASRATKGVTIFNTAKDERVVSV 897



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 80/288 (27%), Gaps = 37/288 (12%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             + G R T+   +   + +  +  ++       V  N+       + +  ++     +G
Sbjct: 622 PLEKGERITSIMPLPEDETSCGELDVMFSTKRGTVRRNKLSDFVQVNRNGKIAMKLDSDG 681

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA-FV 607
           D +      +  D +LL +  G+       ++    G        I+L     I++   V
Sbjct: 682 DEILNVETCNELDDVLLTTALGQCIRFSVDDVRVFAGRNSVGVRGINLGQGDTIISMTIV 741

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-------- 659
           +    +    S +        +E     R       +  E  ++ V  V  D        
Sbjct: 742 HHVDAE---ASERAAYLKRAMAE----RRA-----AIGEEGDVEEVALVGEDAVEDGELS 789

Query: 660 ------------HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD--VICFK 704
                        +  V E       S  +     RG KG+R       G     +  F 
Sbjct: 790 DERYAELKAREQFILTVSEKGYGKRSSSYEFRISGRGGKGIRATDTSKTGEIGPLIAAFP 849

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  G   +  +              +  R   G  +     +  + +S
Sbjct: 850 VEPGDQIMMVSDGGQVIRVPVGGIRMASRATKGVTIFN-TAKDERVVS 896


>gi|15806912|ref|NP_295636.1| DNA gyrase subunit A [Deinococcus radiodurans R1]
 gi|6459698|gb|AAF11467.1|AE002030_6 DNA gyrase, subunit A [Deinococcus radiodurans R1]
          Length = 812

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 224/760 (29%), Positives = 394/760 (51%), Gaps = 35/760 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V +   ++  ++ YA++ I +RA+PD+RDG KPV RRI++AM + GL       KS
Sbjct: 3   GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+ + HPHGD S+YD++VRL Q +  RY L+  QGNFG++DGD AAA RYTEAR
Sbjct: 63  ASVVGEVMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDMAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+VAE IL  ++++ VD +  Y+E  +EP V PS  PNLL NG SGIAVGMAT+IP HN
Sbjct: 123 MTKVAEEILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI    LALIDNP I++++++ ++ GPDFPTGG I   +  I E+Y  G  G +VR +
Sbjct: 183 LTEISNGLLALIDNPAITLDEMMTHVQGPDFPTGGRIA--KVGIREAYATGHAGLKVRGK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV---RIV 312
             +EE   G   I+++EIPYQ+ K+ L++ I+ +  A +IP +  +RDES        ++
Sbjct: 241 ARIEEGKNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIVI 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
              ++ +    L++  ++  + +++ + +    +     P+V+PL   ++ +L HRR+V+
Sbjct: 301 ELKRSAAGMGTLVLNQLYKYTQLQSSYTVMNLSIV-NGEPRVLPLIDTMRYFLDHRRDVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVD 429
            RR+ + ++    R  +L+GLL A  +IDE+I++IR  +         ++RF L+E Q  
Sbjct: 360 TRRTVYDLRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMARFGLSEIQAQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +++ E D L     +++S+L   K  W +I  EIR++++ +  +
Sbjct: 420 AILDMRLQRLVGLEREKLQGEYDELQKTITRLESILGDEKLLWREIKKEIRDIRDRYGDA 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF---- 545
                RR+   E+        ++ +I  E + + ++  G+++     +            
Sbjct: 480 -----RRSVITELEED---INKEDLIAVEDMVITMTRAGYVKRTNLTAYREQKRGGRGSS 531

Query: 546 ----KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL---IDLNH 598
               +E D+        T D +L  +  G+ +     +L       +   +      L  
Sbjct: 532 GGKLREEDANTGVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDAKGTHIRNLLPGLRD 591

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-V 654
           +++I +      +D     +  +  G       ++    T  G   + +   +++  V +
Sbjct: 592 DENIASVLSVSGFDQPGSFIFATKSGVIKKSLITDYANITSAGLIAINLQPGDELIGVDI 651

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKI--CEGLTW 711
           +  GD V +  +N + + F    + +  R  +GV     ++G     +       E    
Sbjct: 652 QQDGDDVVLATKNGQAMRFEATLVRDTGRATQGVIGIRLREGDEVVSMALVPGNDEEGEL 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  +     +           RGG+G +      ++GK +
Sbjct: 712 LAISECGLGKRTKVSDYPSKGRGGLGVITLDVTDKTGKLV 751



 Score = 44.0 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 2/100 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            +S  G        +  S    G  +  L   +    +VT        +L+V++ KG   
Sbjct: 713 AISECGLGKRTKVSDYPSKGRGGLGVITLDVTDKTGKLVTLAHVAGNEELMVLTEKGTVI 772

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
                E+    R   G   + +  ++++     +  +   
Sbjct: 773 RTRVEEVRVTGRNAQGVKVINIGDKDRVIDAFPIRKEDEL 812


>gi|238755472|ref|ZP_04616812.1| DNA topoisomerase 4 subunit A [Yersinia ruckeri ATCC 29473]
 gi|238706313|gb|EEP98690.1| DNA topoisomerase 4 subunit A [Yersinia ruckeri ATCC 29473]
          Length = 757

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 277/757 (36%), Positives = 444/757 (58%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LSNNAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+EI +A +ALID P+ S+E+LLE++ GPDFPT   I+  R+ I + Y+
Sbjct: 178 VGMATDIPPHNVREIAQAVVALIDKPQTSLEELLEFVQGPDFPTDAEIITPRDEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 NGRGSVRMRAVWKKEDGSA-----VITALPHQVSGAKILEQIANQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+   +D + +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRTNRVDMEQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLMAILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ + +R ++R+  + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F 
Sbjct: 353 EWLEFRRDTVRKRLNYRLDKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E + L  E++++ +LL S ++    I  EI+  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEVKIRGEQEELAKERDQLQALLASERKLNTLIKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 ALAYGDE-----RRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LSYKAGDSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S  G  F+   S+++A  R GK  + +    K    +++ G    
Sbjct: 587 EQVLMAPDDQKLLMASDAGYGFVCTFSDLVAKNRAGKAMISLPENAKALTPLEIHGPDDM 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWID 713
           +  +    ++L+F +  +PE+S+GKG ++ S         + G++ +      +    + 
Sbjct: 647 LLSITAAGRMLMFPVADLPELSKGKGNKIVSIPAAQAAAGEDGLAWLFVL-PPQTSVTLY 705

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              R       DL  +  +RG  GS +P+G  +  + 
Sbjct: 706 FGKRKLILRPEDLQKFRAERGRKGSPLPRGLQKIDRV 742


>gi|15604079|ref|NP_220594.1| DNA gyrase subunit A [Rickettsia prowazekii str. Madrid E]
 gi|729651|sp|P41080|GYRA_RICPR RecName: Full=DNA gyrase subunit A
 gi|409961|gb|AAA68146.1| gyrase A subunit [Rickettsia prowazekii]
 gi|3860770|emb|CAA14671.1| DNA GYRASE SUBUNIT A (gyrA) [Rickettsia prowazekii]
 gi|292571802|gb|ADE29717.1| DNA gyrase subunit A [Rickettsia prowazekii Rp22]
 gi|1093608|prf||2104274A DNA gyrase
          Length = 905

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 238/826 (28%), Positives = 381/826 (46%), Gaps = 90/826 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
             N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++
Sbjct: 6   SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYR 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RM +VA  +++ +D+  V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP 
Sbjct: 126 SRMAKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R
Sbjct: 186 HNLGEIIDACCLYIDNHDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E VG     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   + 
Sbjct: 245 GKAEIENVGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIF 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+ 
Sbjct: 305 IELKKDVVAEVVLNQIYACTQLQTNFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVIT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----------- 422
            R+ + +     R  IL GL IA  NIDEII II+  +          +           
Sbjct: 364 NRTIYLLNKARDRAHILLGLTIAISNIDEIIYIIKASNDTNLAKQELMARQWEVLDILPL 423

Query: 423 -----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                             TE Q  AIL ++L+ L  +E+ +++ +L +L  +  +  ++L
Sbjct: 424 IKLVDDKVILNERGTLSFTEVQAKAILEMKLQRLTAMEKEKLEQDLKHLATDIAEYLNIL 483

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +    +  E+ +VKE F+           F +         +  +       +   
Sbjct: 484 ASRTRLLEILKEELIKVKEEFASPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRV 543

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                RS K      S L  ++ D         T   +L  S  GK Y+L    L     
Sbjct: 544 PLSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNP 603

Query: 586 HGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRK 637
            G+   +  ++ L  N+ I                 ++  ++KGN    +  +       
Sbjct: 604 QGKGRPMVNILSLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRSDLLDFKKIQSN 663

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK---GVRLQSY- 692
           GK  +++  ++K+  V     D H+ +  +  K L F ++ +  + + +   GVR     
Sbjct: 664 GKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRII-KSRISDGVRGMKLA 722

Query: 693 KDGGISDVICFK----------------------------------------------IC 706
           K+  +  +   K                                                
Sbjct: 723 KEDSVISMTVLKGINSTKEDRDAYLTVPWEKRLEIAKGEEFNLEELGVNLNADSILEMAN 782

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +      + +  +     +  RGG G +      ++G  + 
Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           + +S   +L V+  G              R G   + +   +K   +  V+ V   D + 
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           ++  + KL+   ++ +    R   GV L    D      +  
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSL 881



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 67/250 (26%), Gaps = 61/250 (24%)

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                I+  +  G        +    + +G+     I L+ +  ++          +L+ 
Sbjct: 635 WDHLNIMFATAKGNIRRSDLLDFKKIQSNGKIA---IRLDEDDKLIDVKPCKEDEHILLA 691

Query: 618 SSKGNAFIVEESEI---IANTRKGKTFLKVSSEEKMKLVVKVTG---------------- 658
           +  G A       +    +    G   +K++ E+ +  +  + G                
Sbjct: 692 TKAGKALRFPVESLRIIKSRISDGVRGMKLAKEDSVISMTVLKGINSTKEDRDAYLTVPW 751

Query: 659 ---------------------------------DHVAVVGENRKLLIFSIDQIPEMSRG- 684
                                            + +  V EN      S        RG 
Sbjct: 752 EKRLEIAKGEEFNLEELGVNLNADSILEMANSEEFILTVTENGFGKRSSAYGYRITDRGG 811

Query: 685 KGVRLQSYKD--GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            G+      D  G +  V+  K+ + L  I ++G+            +  R   G ++ K
Sbjct: 812 SGIINMDINDKTGLVVGVMPVKMDDELMLITNSGK--LIRCKLESVRITGRNTSGVILFK 869

Query: 743 GFPRSGKFLS 752
                 K +S
Sbjct: 870 LDD-DEKVVS 878



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 3/148 (2%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
             +  E     + +     +   K    +L  L         I   A++ + IL ++ +G
Sbjct: 736 INSTKEDRDAYLTVPWEKRLEIAKGEEFNLEELGVNLNADS-ILEMANSEEFILTVTENG 794

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A         G  I  +   +    +V         +L+++++ G     +   
Sbjct: 795 FGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELMLITNSGKLIRCKLES 854

Query: 631 --IIANTRKGKTFLKVSSEEKMKLVVKV 656
             I      G    K+  +EK+  V  +
Sbjct: 855 VRITGRNTSGVILFKLDDDEKVVSVSLI 882


>gi|88797643|ref|ZP_01113232.1| DNA topoisomerase IV, A subunit [Reinekea sp. MED297]
 gi|88779815|gb|EAR11001.1| DNA topoisomerase IV, A subunit [Reinekea sp. MED297]
          Length = 747

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 274/752 (36%), Positives = 444/752 (59%), Gaps = 27/752 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++     E     +SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTDQQNYSE----TISLGQFTEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   
Sbjct: 57  LRNTAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPK 116

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+ + A L+L+ + +  VD+   ++    EP V P++ P++L NGT+GIA
Sbjct: 117 SFAAMRYTESRLHKNAHLLLEELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIA 176

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  A + LID P+ S+  L+ ++ GPDFPTG  ++  +E I + Y 
Sbjct: 177 VGMATDIPPHNLKELAAACVHLIDQPDASVTDLMMHVRGPDFPTGAELISPKEDIRKIYE 236

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+R+++ ++E       IV+TE+P+QV  S+++E+IA+ + AK++P++ D+RDE
Sbjct: 237 GGRGTLRLRSKY-IQEGTD----IVITELPHQVSGSKILEQIAQQMQAKKLPMVADLRDE 291

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E    +N+N++ +   PQV PL+ IL 
Sbjct: 292 SDHENPTRLVIEPRSNRVDTDALMNHLFATTDLEKTIRVNLNMIGIDGKPQVKPLNHILS 351

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R E + RR  +R+  +  R+ IL GLLIAYLNIDE+I IIR EDKPK  +++RF 
Sbjct: 352 EWLEFRTETVRRRLQYRLDKVLARLHILDGLLIAYLNIDEVIDIIRTEDKPKEELMARFG 411

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E D L  E+++++ +L S  +    I  EI   
Sbjct: 412 LSDVQAEAILEIKLRQLAKLEEIKIRGEQDELSKERDQLEKILGSKARMRTLIKKEILAD 471

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RRT     + A   +  + ++  E +TVV+S RGWIRS K H ++   
Sbjct: 472 AETYGD-----DRRTLLVSRAEASAFSETE-ILPSEAVTVVLSERGWIRSGKGHELEPEG 525

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GDS   A    +    +LL + G++Y+L    L S RG GE I   ++      +
Sbjct: 526 LNYKSGDSFAFAARGKSNQATVLLDSTGRSYSLQTHTLPSARGQGEPITTRLNPPPGAAM 585

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGD 659
               + +   + L+ S  G  FI + S++++  + GK  L +    ++     V +++ D
Sbjct: 586 KGLLLGNPDDQYLLTSDAGYGFIGKLSDMVSKNKAGKALLSLPKGAEVMPPQPVKQLSTD 645

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
           ++A +    +LL+F +  +PE+++GKG ++ +           +         +    + 
Sbjct: 646 YLAAISNEGRLLVFPVRDLPELAKGKGNKIINIPSSRAAAREELMVGAVVLGADDTLLVY 705

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           +  R      +DL  +LG+RG  G+ +P+GF 
Sbjct: 706 AGKRKLKLRGSDLEHYLGERGRRGNKLPRGFQ 737


>gi|149914919|ref|ZP_01903448.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b]
 gi|149811107|gb|EDM70944.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b]
          Length = 908

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 261/827 (31%), Positives = 404/827 (48%), Gaps = 103/827 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 16  VSIEDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEGGNTHDKPYRKSARAV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM + 
Sbjct: 76  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +++D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 136 AAALLADIEKDTVDFQDNYDGKDLEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+A LALI+NP++  E L+EYI GPDFPTGGI++  R    ++Y  GRG   +R++  +E
Sbjct: 196 CDATLALIENPDLGSEDLIEYIPGPDFPTGGIML-GRSGARKAYIEGRGSVVIRSKTRIE 254

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IV+ EIPYQV K+ +IEKIAE +  KRI  +  ++DES      V+    R 
Sbjct: 255 EIRKDRYAIVIDEIPYQVNKAAMIEKIAETVREKRIEGIAHVQDESDRHGVRVVVELKRD 314

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++  +F  + M+T F  NM  L+ G  P+ + L G L  ++  R EV+ RR++F 
Sbjct: 315 ATAEVVLNQLFRFTPMQTYFGCNMLALN-GGRPEQLTLHGFLSAFITFREEVVARRTAFE 373

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------------------------- 412
           ++    R  +L GL +A  N+DE++A IR                               
Sbjct: 374 LRKARDRSHVLCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAGDILEYIALIDD 433

Query: 413 --PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++L+E Q  AIL+LRL+ L +L   ++  EL  L A+ ++  ++L S ++
Sbjct: 434 PTHTANDDGTYNLSETQARAILDLRLQRLTQLGVKEVTDELQELAAKIKEYLAILASRER 493

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I+ E+REVKE FS       RRT   + S        + +IE+E + V ++  G+I
Sbjct: 494 IMEIISTELREVKEQFSVP-----RRTQIVDWSGDMD---DEDLIEREDMVVTVTQGGYI 545

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 546 KRTALADFRAQKRGGKGLSGMATKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPL 605

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
                 G+AI  ++ +     I      D         +++  ++ G+      S+    
Sbjct: 606 GGRTSKGKAIVNILPIPQGVSIAAIMPVDRPEEEWDDLQVMFATTAGDVRRNALSDFTNV 665

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRLQS 691
            R GK  + +    ++        GD + +V  + + + F   ++     R   GVR   
Sbjct: 666 KRNGKIAMDLPDGIELVNARICDEGDDIMLVTNSGRAIRFPTTEVRVFKGRKSTGVRGIR 725

Query: 692 YKDGGISDVICF-----------------------KICEGL------------------- 709
            +       +                            +G                    
Sbjct: 726 LQGDDRVVSMSVIRHFDASADERAAYLKMRRALAGAPDDGEEPEAAAGDITPDRFEEMQA 785

Query: 710 ---TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +  +     +  +     +  RGG+G        R G  ++S
Sbjct: 786 AENLILTISTEGAGKLSSSHDYPVRGRGGMGVQAMDKAMRGGDLVAS 832



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 10/131 (7%)

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFL 642
              EA    I  +  +++  A        +L +S++G   +    +     R G     +
Sbjct: 766 EEPEAAAGDITPDRFEEMQAA-----ENLILTISTEGAGKLSSSHDYPVRGRGGMGVQAM 820

Query: 643 --KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
              +   + +        D + +     + +   +D I   SR   GV++   + G    
Sbjct: 821 DKAMRGGDLVASFPVEIDDQIMLATSRGQSIRVPVDGISFRSRSAGGVKVFDTRKGEEVV 880

Query: 700 VICFKICEGLT 710
            + +   +G  
Sbjct: 881 SVAWIAEKGDQ 891


>gi|300742651|ref|ZP_07072672.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
 gi|300381836|gb|EFJ78398.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
          Length = 881

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 225/760 (29%), Positives = 370/760 (48%), Gaps = 22/760 (2%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                N++ + L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+I+ M + G     
Sbjct: 26  DNPHGNIEQIDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYGMYDGGYRPDR 85

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           AF K ARIVG+V+G+ HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+   D AAA R
Sbjct: 86  AFNKCARIVGDVMGQFHPHGDSAIYDALVRLIQGWTMRYPLALGQGNFGSPGNDGAAAPR 145

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE +M  +A  +++ ++ED VDF+  Y+ +  EP V P++ PNLL NG+SGIAVGMAT+
Sbjct: 146 YTETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLINGSSGIAVGMATN 205

Query: 191 IPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           IP HN++E+       + NP  + E+    L+E I GPDFPTG  I+   + I ++YR G
Sbjct: 206 IPPHNLREVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATIL-GTKGIEDAYRTG 264

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +RA   VEE+  G  C+VVTE+PYQ     L  KIA+LI   ++  + D+RDE++
Sbjct: 265 RGSITMRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETS 323

Query: 307 -EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               + ++    R   P +++ +++  + ++  F  NM  +    VP+ + LD  ++ W+
Sbjct: 324 GRTGQRLVIVLKRDAVPKVVLNNLYKHTQLQENFSANMLAIVD-GVPRTLSLDAFIRHWV 382

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H+ +V+ RR+ +R++  +    IL+GLL A   +DE+IA+IR            +    
Sbjct: 383 NHQMDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALMDFLD 442

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q  AILN++LR L  LE  +I+   D L     + ++++ S  +Q   I+ E+ E+
Sbjct: 443 IDEAQAQAILNMQLRRLAALERQKIQDRHDELQRLIAEYNAIIASEDRQREIISEELGEI 502

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-ITVVISNRGWIRSLKSHSVDLS 541
              +         R    ++S  D    ++ ++       +  +     RS       + 
Sbjct: 503 VNRYGDDRRTEILRGFNGDMSMEDLIPEEEVVVTITRGGYIKRTRSDQYRSQHRGGKGIR 562

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHN 599
               +  D ++      T   IL  +  G+ Y      L       +      L++   +
Sbjct: 563 GAQLRGDDVVEHFFVTTTHSWILFFTNLGRVYRTKGYELQEAGRDAKGQHLANLLEFQPD 622

Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I        Y+    L++ +  G       S+   N   G   + +  ++++     V
Sbjct: 623 EHIAQVMDLKTYEDAEYLVLATKGGLVKKSRLSDYDTNRTAGLIAINLRDDDEVVSAFLV 682

Query: 657 T-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           +  D + ++  N   L F  +   +  M R   GV    ++DG         I E     
Sbjct: 683 SPEDDILLISRNGMSLRFHANNESLRPMGRSTSGVTGMKFRDGDELISAQVVIPESF-VF 741

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +  +     +  R G G  V K     G  + 
Sbjct: 742 VVTEGGYAKRTHVEGYRVQGRNGFGIKVAKLVEGRGALVG 781


>gi|282857631|ref|ZP_06266848.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455]
 gi|282584545|gb|EFB89896.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455]
          Length = 871

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 249/754 (33%), Positives = 400/754 (53%), Gaps = 26/754 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L   ++  YL YA+S I  RA+PD RDG KPV RR+++ M  +G+    A+KKS
Sbjct: 8   RVIPNPLVPEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRVLYGMLGLGIRHNQAYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD S+YD++VRLAQP+  RYPL+ GQGNFG++DGD AAA RYTEAR
Sbjct: 68  ARVVGEVMGKYHPHGDASIYDTMVRLAQPWNLRYPLVDGQGNFGSVDGDGAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
             ++ EL+LQ +DED VD+   ++E   EP+  PS  PNLL NG++GIAVGMAT++P HN
Sbjct: 128 FAELGELMLQDIDEDTVDWGPNFDESLKEPLTLPSLVPNLLVNGSTGIAVGMATNMPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A   LID+PE  + +L+ Y+ GPDFPTGG I+  RE IV++YR GRG   VR R
Sbjct: 188 LGEVIDALCCLIDHPEAELGELMNYLPGPDFPTGG-IIMGREGIVDAYRTGRGKIIVRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            CV E G+    +V+TEIPY V K+ LIE IA+ +    I  + D+RDES      ++  
Sbjct: 247 -CVVEEGKRRTSVVITEIPYMVNKTTLIEGIAKCVQEHTIDGVSDLRDESDRQGLRIVLD 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            NR  DP+L+   ++  + M++ F +    L   R P  + L  +L+ +L +RR+V+ RR
Sbjct: 306 LNRDGDPELVQRQLYNRTLMQSTFGVINLTLVDQR-PVELGLKSMLEVFLDYRRDVVRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAIL 432
           ++FR+     R  I++GL  A   IDE+I IIR     +        +   +E Q  AIL
Sbjct: 365 TAFRLAKAQEREHIIEGLCRALDMIDEVIRIIRGAQTAEEASHGLTEQLQFSEKQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  ++ +E+  LLA+  +   +L   K     I  E+ E++  F      
Sbjct: 425 DMRLQRLTGLERDKLTAEMAQLLADIARYQEILADAKTLDGVIRDELAELRHKFGD---- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             +R T  ++     +   + ++ +E I + +S  G++R                    +
Sbjct: 481 --KRRTEIQLHVESTSDSYEDLMPEENIVITLSKDGYLRRSLLKDYNVQNRGGKGRRGAN 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG-HGEAIQLLIDLNHNQDIV 603
             E D +   +   T + +LL ++ G+ + +    +   +   G  ++  I L+  + +V
Sbjct: 539 LHEEDQVAGMVVTTTHNDVLLFTSRGRVFAIKGHMVPETKSGKGRKVEQFISLSEGETVV 598

Query: 604 TAF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                  D+   +++++ +G A  +++SE+   TR G+  + +   + +  +    G D 
Sbjct: 599 EILGRFPDNCSTVVLITRRGIAKRMDKSELQNLTRAGRQIMTLDDGDDIARIRCTNGLDD 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V    + L  S D+I  M R  +GV+           + C  I      +  + R  
Sbjct: 659 LFLVSAMGRGLRISEDEIRTMGRSARGVKAMKLGKDDEI-ISCEVIAGDSRILLVSQRGI 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +     +  R   G    +   R+G+   +
Sbjct: 718 GKITSYDEFSVHHRATGGQRAMRIGDRTGRLAVA 751



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 66/176 (37%), Gaps = 6/176 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
               +   +GD +      +  D + L+S  G+   +    + +       +   + L  
Sbjct: 635 GRQIMTLDDGDDIARIRCTNGLDDLFLVSAMGRGLRISEDEIRTMGRSARGV-KAMKLGK 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           + +I++  V     ++L+VS +G   I    E   + R   G+  +++        V   
Sbjct: 694 DDEIISCEVIAGDSRILLVSQRGIGKITSYDEFSVHHRATGGQRAMRIGDRTGRLAVANT 753

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
               D VA++     ++  ++D IP++ R   G  L   ++G     +     E L
Sbjct: 754 VFPDDEVALMTAGGNIIRLAVDSIPQLGRDAAGSILIRPENGDEVANVSLIHKEDL 809


>gi|289649098|ref|ZP_06480441.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 751

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 265/758 (34%), Positives = 438/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +PSHN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPSHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D   
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDAIG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIAQGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 709 QAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|225352386|ref|ZP_03743409.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156893|gb|EEG70262.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 904

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 224/771 (29%), Positives = 374/771 (48%), Gaps = 27/771 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++   +V E ++   L+  + + YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + G 
Sbjct: 30  TDYGLMVGERIQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGY 89

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D A
Sbjct: 90  RPDRGYSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPA 149

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVG
Sbjct: 150 AAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVG 209

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ E     +D+P+ S E+    L+  I GPDFPTG  I+   + I ++
Sbjct: 210 MATNIPPHNMREVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQA 268

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+V+TE+PYQV   RL+  I E +   +I  + D+R
Sbjct: 269 YRTGRGLITMRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMR 327

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  +
Sbjct: 328 DETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFI 386

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + W+ H+ EV+ RR+++  +  + R  IL+G L A   IDE+IA+IR  +  +       
Sbjct: 387 RHWVGHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM 446

Query: 422 ---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + E Q DAIL ++LR L  LE  +I  E + L+      + +L   ++Q   +  E
Sbjct: 447 DLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYNDILAKPERQRKIVGDE 506

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+   +           +         A     +       +  +     R+      
Sbjct: 507 LDEIVSKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKRTKADEYRAQHRGGK 566

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y L A  L  G    +   +  L+  
Sbjct: 567 GIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVANLLQF 626

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I T      Y+    L++ +  G       +E  +  + G   +++ +       
Sbjct: 627 GPDETIQTVLSIPNYEVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLMTGENGENA 686

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICF 703
           +++         D + +V +    L F  +   +  M R   GV+   +++G     +  
Sbjct: 687 DELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMGRQTAGVQGMKFREGDELLAMDV 746

Query: 704 KICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +            + +        L  R G G    +     G  + +
Sbjct: 747 VWGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGRGSLVGA 797


>gi|330837804|ref|YP_004412445.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374]
 gi|329749707|gb|AEC03063.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374]
          Length = 841

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 242/762 (31%), Positives = 393/762 (51%), Gaps = 18/762 (2%)

Query: 6   ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + N   +VEE    +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ M 
Sbjct: 1   MRNEEHIVEEKESRIIKIEVSQEMKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYDMY 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           EMGL     FKKSAR+VG+V+GK HPHGD SVYD+LVRLAQ F  RYP++  QGNFG+ID
Sbjct: 61  EMGLRANTPFKKSARVVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVRPQGNFGSID 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE +M+++ E +L  + +D VDF   Y++   EP V P+ FP +LANG+SG
Sbjct: 121 GDPPAAMRYTEVKMSRIGEEMLADIQKDTVDFGPNYDDSLQEPQVLPAAFPFMLANGSSG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT++  HN+ EIC+A  A+I+NP+I +E L++YI GPDFP+G  I+  ++ I+++
Sbjct: 181 IAVGMATNMAPHNLTEICDAIGAVIENPDIDLEGLMQYIKGPDFPSGA-IICGQQGIIDA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           +  GRG    RAR+ +EE  RGS  I+ T+IPYQV K+ L++KI EL     +P +  +R
Sbjct: 240 FSTGRGKIVQRARYEIEEHERGSDQIIFTQIPYQVNKAELVKKIDELRRND-LPAISAVR 298

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   ++    +   P +++ ++F+ + +++ F +N   L     PQ++ L  IL 
Sbjct: 299 DESDREGIRIVVELKKGSVPRIVLNTLFLRTPLQSNFNVNNLALV-NGRPQLLSLKEILV 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
            ++ +R +V+ RR+ + +Q  + R  IL GL I   NIDE+I II+  +        +  
Sbjct: 358 HYINYREQVVERRTRYDLQKAEERAHILLGLKIGLENIDEVIRIIKESEDNAAASEGLQK 417

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LT+ Q DAI++++L  L  LE  +I  EL  L  +      LL   ++    +A E 
Sbjct: 418 AFGLTKIQADAIIDMKLGRLSHLETEKILEELAELEVKIAYYKDLLADRRKILGVVAQET 477

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-SV 538
           RE+   +        +R    +    D    ++ ++       +          +     
Sbjct: 478 RELAAKYGDKRLTEIQRAEIGQTQVEDFIKNEEVVVVISNKGFIKRVVAEEYRSQGRGGS 537

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +        D ++    A T D ++ +S+ GKAY +    +  G    +  +I+ LID+
Sbjct: 538 GVKGAKLINDDFVEHLYVASTHDYVMFVSSFGKAYWIKVHEIPEGSKVSKGSSIKQLIDI 597

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK-L 652
              ++I +      +     L +V+  G    V          +G   L +   + M   
Sbjct: 598 TDGEEISSIINFTEFHDDQYLFMVTKHGVTKKVGLPAFRNAKSRGVRALFLDEGDIMVQS 657

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTW 711
            +   GD +  V    + L  +   +  M R  +GVR      G  + +   K+ +    
Sbjct: 658 ELMTDGDDMMFVTAGGRGLRIAGGDVRAMGRASRGVRGMKL-LGDDTVIGLLKVDDSRRI 716

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    +   +  N        RG  G L+ +   ++   +++
Sbjct: 717 LMITEKGQGKQVNFSNFNRHGRGTQGQLIYRIKEKTSYLVNA 758



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 73/214 (34%), Gaps = 6/214 (2%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                            +       V    G      + S  + AL   EGD +  +   
Sbjct: 601 EEISSIINFTEFHDDQYLFMVTKHGVTKKVGLPAFRNAKSRGVRALFLDEGDIMVQSELM 660

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
              D ++ ++  G+   +  G++ +       ++ +  L  +  ++     D + ++L++
Sbjct: 661 TDGDDMMFVTAGGRGLRIAGGDVRAMGRASRGVRGMKLL-GDDTVIGLLKVDDSRRILMI 719

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTGD-HVAVVGENRKLLIF 673
           + KG    V  S    + R   G+   ++  +   +   + V  +  V V+    + +  
Sbjct: 720 TEKGQGKQVNFSNFNRHGRGTQGQLIYRIKEKTSYLVNALAVNDENDVVVITMQGQTIRI 779

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
            ++ I    R   GVR+ + K+   S V      
Sbjct: 780 HVNLISTQGRNASGVRVVALKNPKDSIVALAVTD 813


>gi|89894291|ref|YP_517778.1| hypothetical protein DSY1545 [Desulfitobacterium hafniense Y51]
 gi|89333739|dbj|BAE83334.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 808

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 243/761 (31%), Positives = 405/761 (53%), Gaps = 27/761 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ EEN+   SL   L E YL Y+   I +RA+PD+RDG KPVHRRII+AM E+G+    
Sbjct: 2   SIPEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR+VG+ +GK HPHGD S+YD+ VR+AQP+  RYPLI GQGNFG+IDGD AAA R
Sbjct: 62  PYSKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RMT +++L+ Q +++D + F+  Y++ + EP+V PS FPNLL NG SGIAVGMA++
Sbjct: 122 YTEMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+  A +  IDNP +++E+L+E + GPDFPTGG ++   +   E+YR GRG  
Sbjct: 182 IPPHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGG-LIIGSQGFTEAYRSGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R +  +E    G   IV+TEIP+QV KS L  KI       +I  + ++RDES  +  
Sbjct: 241 TMRGKAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  DP  +++ ++  + ++  F +   V+S    P+V+ L  I + +L HR+E
Sbjct: 301 RLVVECKKDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINRSYLQHRKE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ + +     R  IL+GL+IA  N+DE++ IIR+   P   K  +++RF  +E Q
Sbjct: 361 VVLRRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITRFEFSEVQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE   I+ E   +L    +++S+L    + +  I  E++++ E + 
Sbjct: 421 AQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESILADINKVYTIIKHELKQIAEQYG 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR----SLKSHSVDLSAL 543
                  RRT        D+         ++P+ V+++ +G+I+      +   ++  A 
Sbjct: 481 DE-----RRTLILPEDVGDEVDYSAFEEPEKPMEVLLTKKGFIKQIPTPTRRSQINAIAF 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
            FK+GD L   +   + D +   + +GK Y   A  +       +  A+  L  L   + 
Sbjct: 536 AFKDGDVLLEHVSCTSKDTLYFFTHNGKYYDAKAKLVAEAGAKEKGRAVNNLFPLPEEER 595

Query: 602 IVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           IV              + V+  G        + +         + +  ++++  V    G
Sbjct: 596 IVAMVSLREEKEGQYFVFVTKDGQVMRSPVKDFLNARTA--EAMGLKEQDEIVKVFLSAG 653

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICF---KICEGLTWI 712
           +  + +     + + F+  ++  M R  +GV+  +  +G  + D +        E    I
Sbjct: 654 EGELFLASLQGQAIRFAEAEVNPMGRKSRGVKGMTLNEGDYVVDALLIQPGADGETGDLI 713

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF-PRSGKFLS 752
               + Y +  + +      R G G  + K    ++G  +S
Sbjct: 714 TVTEQGYVKRTSLVEYKPQGRAGRGIAIAKIDAEKTGNLVS 754


>gi|159044025|ref|YP_001532819.1| DNA gyrase subunit A [Dinoroseobacter shibae DFL 12]
 gi|157911785|gb|ABV93218.1| DNA gyrase, A subunit [Dinoroseobacter shibae DFL 12]
          Length = 913

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 252/843 (29%), Positives = 403/843 (47%), Gaps = 107/843 (12%)

Query: 7   SNSNTLVEENVKA-VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        ++  +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G
Sbjct: 11  TDETPPGGGRIQETISIAEEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETG 70

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                A++KSAR VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+
Sbjct: 71  NTHEKAYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDN 130

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM + A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAV
Sbjct: 131 PAAMRYTEVRMDKPAAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAV 190

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A LALI+ P++ +E L++YI  PDFPTGG I+  R    ++Y  
Sbjct: 191 GMATNIPPHNLGEVIDATLALIETPDLEVEDLMQYIPAPDFPTGGQIL-GRGGARKAYLE 249

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE+ +  + IV+ EIPYQV KS +IEKIAEL+  KRI  +  ++DES
Sbjct: 250 GRGSVIIRAKTRIEELRKDRYAIVLDEIPYQVNKSSMIEKIAELVREKRIEGIAHVQDES 309

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    R   P++++  ++  + M+T F  NM  L+ G  P+ + L   L  ++
Sbjct: 310 DRVGVRVVIELKRDATPEVVLNQLYRFTPMQTSFGCNMLALN-GGRPEQLTLKDFLSSFI 368

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------- 412
           + R EV+ RR+++ ++    R  +L GL +A  N+DE++A IR                 
Sbjct: 369 SFREEVVARRTAYDLRKARERSHVLCGLAVAVSNVDEVVATIRASADAAEAREKLMTRRW 428

Query: 413 ----------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   ++L+E Q  AIL+LRL+ L ++   ++  EL  L A
Sbjct: 429 PAADIADYIRLIDDPTHTMNEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELQELAA 488

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           + ++   +L S  +    I+ E+REVK+ F+       RRT   + S   +    + +IE
Sbjct: 489 KIQEYLDILRSRSRIMAIISDELREVKDQFAVP-----RRTEITDWSGDME---DEDLIE 540

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +++ G+I+          +     L+ +  KE D +     A+T   +L+ +T
Sbjct: 541 REDMVVTVTSGGYIKRTPLVEFRAQRRGGKGLAGMATKEDDVVTTLFVANTHTPLLVFTT 600

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSK 620
           DG  Y L    L S      G+A+  ++ ++    I      D      +  +++  +S 
Sbjct: 601 DGMVYKLKTWRLPSGGRNARGKALVNVLPIDPGTSIAAIMPVDRAEEDWADLQIVFATSA 660

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIP 679
           G+      S+     R GK  +K+     +         D V +V    + + F    + 
Sbjct: 661 GDVRRNALSDFTNVMRNGKIAMKLPEGVSLVKARICSEEDDVMLVTALGRAIRFRTTDVR 720

Query: 680 E-MSR-GKGVRLQSYKDGGISDVICFK--------------------------------- 704
               R   GVR     +G     +                                    
Sbjct: 721 VFKGRDSTGVRGVRLAEGDRVVSMAVIRHFVADPQERAAYLKMRRAVAGLSEEAESEDED 780

Query: 705 ---------------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                                 +        +  +     +  RGG G        R G 
Sbjct: 781 TVEAGQLSPERYAEMSAAEDLILTITEGGTGKISSSHDYPVRGRGGQGVTAMDKAMRGGP 840

Query: 750 FLS 752
            ++
Sbjct: 841 LVA 843



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 5/105 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L ++  G   I    +     R G+    +        +     V   D + +  
Sbjct: 798 AEDLILTITEGGTGKISSSHDYPVRGRGGQGVTAMDKAMRGGPLVACFPVEIDDQIMLAT 857

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
              + +   +D I   SR   GV++ +   G     + +    G 
Sbjct: 858 STGQSIRCPVDGISFRSRAAGGVKVFNTAPGEQVVSVAYIADRGE 902


>gi|207743943|ref|YP_002260335.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum IPO1609]
 gi|206595345|emb|CAQ62272.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 842

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 222/761 (29%), Positives = 361/761 (47%), Gaps = 63/761 (8%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           HRR+++AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ 
Sbjct: 2   HRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVD 61

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG++DGD+AAA RYTE R++++A  +L  +D++ V+F   Y+  ++EP + P++ P
Sbjct: 62  GQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIP 121

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
           NLL NG+SGIAVGMAT+IP HN++E+ +  L L+ NP+ ++++L+E I  PDFPT G I+
Sbjct: 122 NLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAG-II 180

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIA 292
                + E YR GRG   +RA+   E++ RG    I+V E+PYQV K  L+E+IAEL+  
Sbjct: 181 YGISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQSIIVDELPYQVNKRTLLERIAELVTE 240

Query: 293 KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           KR+  + DIRDES +    V+    R   P++++ +++  + ++  F +NM  L     P
Sbjct: 241 KRVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVD-GQP 299

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           +++ L  +L+ +L HRREV+ RR+ F ++    R  IL+GL +A  NIDE IAII+    
Sbjct: 300 RLLNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPT 359

Query: 413 PKPVMVSRFS--------------------------------------------LTENQV 428
           P                                                     L++ Q 
Sbjct: 360 PPIAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL +RL+ L  LE+ +I  E   ++A+   +  +L   ++    I  E+  ++  F  
Sbjct: 420 QEILQMRLQRLTGLEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                         +          +       +        R+ K       A   KE 
Sbjct: 480 ERRSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKED 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D +     A+T D IL  S  G+ Y L    +        G  I  +  L+  + I    
Sbjct: 540 DWIDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVIL 599

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VA 662
               +D    + + +SKG       +E     + G   + +   + +       G H V 
Sbjct: 600 PVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVM 659

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL---------TWI 712
           +  +  K + F  + +  M R  +GVR  + ++G     +     E           + +
Sbjct: 660 LFSDAGKAVRFDENDVRPMGRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVL 719

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    Y +           RG  G +  +   R+GK +++
Sbjct: 720 TATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAA 760



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 618 TVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L   Q ++   V  +             +L  +  G       SE  
Sbjct: 678 MGRQARGVRGM-NLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYT 736

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     + + +   +    D + ++     L+   +D+I EM R  +GV
Sbjct: 737 RHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGV 796

Query: 688 RLQSYKDG 695
            L +  +G
Sbjct: 797 TLIAVGEG 804


>gi|254787812|ref|YP_003075241.1| DNA topoisomerase IV subunit A [Teredinibacter turnerae T7901]
 gi|237683816|gb|ACR11080.1| DNA topoisomerase IV, A subunit [Teredinibacter turnerae T7901]
          Length = 748

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 272/745 (36%), Positives = 433/745 (58%), Gaps = 23/745 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + + L+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +KKSAR
Sbjct: 12  EQLPLKVFTEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELGLKASAKYKKSAR 71

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARM 136
            VG+VIGK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RYTEAR+
Sbjct: 72  TVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSQDDPKSFAAMRYTEARL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +   E++L  + +  V++   ++    EP V P++ P +L NGT+GIAVGMAT IP HN+
Sbjct: 132 SAFTEVLLSELAQGTVEWLPNFDGTLDEPKVLPARVPTVLLNGTTGIAVGMATDIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+ +A + L++NP+    +L E+I GPD PT   I+  +  + + Y  GRG  ++RA W
Sbjct: 192 REVVDATIHLLENPDADNAQLCEFIPGPDMPTDAEIITPKADLQKVYETGRGSMKMRAVW 251

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLF 314
             EE       IV+T +P+QV  ++++E+IA  + AK++P++ D+RDES  +   R+V+ 
Sbjct: 252 RKEEGD-----IVITALPHQVSGAKILEQIAAQMQAKKLPMVADLRDESDHENPIRLVIV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL++WL+ R   + R
Sbjct: 307 PRSNRIDQEAVMNHLFATTDLERSYRINLNMIGIDGRPGVKSLREILQDWLSFRMVTVRR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R   R+  ++RR+ +L GLLIA+LN+DE+I IIR ED PK  ++ RF L+E+Q + IL+ 
Sbjct: 367 RLQHRLDWVERRLHLLDGLLIAFLNLDEVIHIIRTEDHPKQKLMERFELSEDQANYILDT 426

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR L +LEE +I+ E   L  E++++  +L+S ++    I  E+  V + F  +     
Sbjct: 427 RLRQLARLEEMKIRDEQQKLEKERDELQKILDSARRLKTLIKKELLAVVDEFGDA----- 481

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RR+   E S A   +  + +  + P+TVV+S +GWIRS K H +D SAL +K GDS ++A
Sbjct: 482 RRSPMVERSEAQAFSETELISSE-PVTVVLSEKGWIRSAKGHDIDPSALSYKAGDSFRVA 540

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
               ++   LLL + G++Y LP   L S RG GE +   ++           + D T K+
Sbjct: 541 ARGKSSQATLLLDSTGRSYALPTHTLPSARGQGEPVTGRLNPPSGAVFEGLLMGDDTQKV 600

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---VTGDHVAVVGENRKLL 671
           L+ S  G  FI   S++    R GK  L V +  ++             +A      +LL
Sbjct: 601 LLASDAGYGFIASLSDLYTKNRSGKAMLSVPAGGRVLAPQLLETTDASWLAAFSNEGRLL 660

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGIS-----DVICFKICEGLTW-IDSAGRSYNRSEND 725
            F + ++PE++RGKG ++ +     +       V      E  T  + S  R       D
Sbjct: 661 AFPVSELPELARGKGNKIINIPAARVQSREEFVVALVVFNEKSTIKVFSGKRHLGLKYKD 720

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  +LG+RG  G+ +P+GF +    
Sbjct: 721 LEHYLGERGRRGNKLPRGFQKVDSV 745


>gi|148239925|ref|YP_001225312.1| DNA gyrase subunit A [Synechococcus sp. WH 7803]
 gi|147848464|emb|CAK24015.1| DNA gyrase subunit A [Synechococcus sp. WH 7803]
          Length = 878

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 229/785 (29%), Positives = 390/785 (49%), Gaps = 58/785 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K 
Sbjct: 14  RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 73

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE+R
Sbjct: 74  ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 133

Query: 136 MTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +  +  + +L+ ++ + VD+ D ++    EP V PS+ P LL NG++GIAVGMAT+IP H
Sbjct: 134 LKALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LALI+NPE+S ++L+  I GPDFPTGG I+  R  I E+Y  GRG   +R 
Sbjct: 194 NLGELIAGLLALIENPELSDQELMALIPGPDFPTGGQIL-GRTGIKETYLSGRGSVTMRG 252

Query: 255 RWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
              +E +          +++T +PYQ  K+ +IE+IAE++  K++  + DIRDES  D  
Sbjct: 253 VAAIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGM 312

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++ L+ +++ F  +M  L     P ++ L  +L+ +L  R E
Sbjct: 313 RIVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALV-NGEPILLTLRKMLEVFLDFRVE 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
            + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L++ Q
Sbjct: 372 TIERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQERHGLSDVQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ ++++  +
Sbjct: 432 ADAILQMQLRRLTALEADKIRLEHEDLVVKIADYKDILGRRERVFGIIQDELGQLRDRHA 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVD 539
                  RRT   ++           +I  E   V+++  G+++ +           +  
Sbjct: 492 IP-----RRTEILDLGGG---LDDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRG 543

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
            +    +  +++K+ +  +  D +LL S  G +Y LPA  +       +   +  L+ + 
Sbjct: 544 KAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIP 603

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I +      ++    LL+++  G       S        G   + +   + +  V 
Sbjct: 604 REEMITSLLAVSEFNDDTDLLMLTQGGFIKRTRLSAFSNIRSNGLIAIGLEEGDALTWVR 663

Query: 655 K-VTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGGISDVICF------- 703
             V GD V +       + F +  D++  + R  +GVR  + +DG     +         
Sbjct: 664 LAVPGDSVLIGSRAGMTIHFRLSDDELRPLGRTARGVRSMNLRDGDALVSMDVLPVELAD 723

Query: 704 ----------------KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                            + +G   + ++     +        L KR G+G    K    +
Sbjct: 724 RVAQSSEDDSGEDETGDVSDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTEA 783

Query: 748 GKFLS 752
              + 
Sbjct: 784 DALVG 788



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVS-SEEKMKLVVKV-TGDHVAV 663
                 +LV S+ G    V  ++     R G     +K     + +  +  +  G+ V +
Sbjct: 741 VSDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTEADALVGLRVLGAGEEVLL 800

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
           V E   ++  S D IP+ SR   GVRLQ    G     +     
Sbjct: 801 VSEKGVIVRTSADSIPQQSRAATGVRLQRLDKGDRLSEVVLVPP 844


>gi|332535130|ref|ZP_08410940.1| topoisomerase IV subunit A [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035448|gb|EGI71946.1| topoisomerase IV subunit A [Pseudoalteromonas haloplanktis ANT/505]
          Length = 764

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 271/758 (35%), Positives = 445/758 (58%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++TL+ + ++  ++    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L+ + +  VD+   ++    EPVV PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPVVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+D P+  +E+LLE +  PD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELEELLELVHAPDYPTDAEIITPKADIHKIYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +           IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYT-----EEHGDIVITALPHQCSGGKVLEQIAAQMNAKKLPMIADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRCILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR  +R+  +  R+ IL+GLL A+LNIDE+I IIR+EDKPKPV++ RF 
Sbjct: 356 EWLTFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPVLMERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I+ E D L  E++K+  +L S ++    +  EI+E 
Sbjct: 416 LTDTQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLAQILGSERRMSTLLKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E S A KA  ++ +I  E +TVV+S++GW R  K H +D+  
Sbjct: 476 AEMYGD-----DRRSPVIERSEA-KALNEKDLIPSESVTVVLSDKGWARVGKGHDLDVQG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD  + +    +    + L + G+A+   A +L S R  GE +    +L    + 
Sbjct: 530 LNYRSGDGFRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTPGANF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +    LL+ S  G  FI +  ++++  + GK  + V     +   ++V     D
Sbjct: 590 EHVVMSEDEQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGILLSPIRVNDVASD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI------SDVICFKICEGLTWID 713
           +   +    ++L+F +  +P++S+GKG ++ S     +        V+          + 
Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLSKGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  R      +DL  + G+RG  G+ +P+G  R  + +
Sbjct: 710 AGKRKLTLKPSDLEHYHGERGRRGNKLPRGLQRVDEAV 747


>gi|88808973|ref|ZP_01124482.1| DNA gyrase subunit A [Synechococcus sp. WH 7805]
 gi|88786915|gb|EAR18073.1| DNA gyrase subunit A [Synechococcus sp. WH 7805]
          Length = 876

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 230/785 (29%), Positives = 389/785 (49%), Gaps = 58/785 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K 
Sbjct: 18  RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE+R
Sbjct: 78  ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137

Query: 136 MTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +  +  + +L+ ++ + VD+ D ++    EP V PS+ P LL NG++GIAVGMAT+IP H
Sbjct: 138 LKALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPH 197

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LALI+NPE+S ++L+  I GPDFPTGG I+  R  I E+Y  GRG   +R 
Sbjct: 198 NLGELIAGLLALIENPELSDQELMALIPGPDFPTGGQIL-GRTGIKETYLSGRGSVTMRG 256

Query: 255 RWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
              +E +          +++T +PYQ  K+ +IE+IAE++  K++  + DIRDES  D  
Sbjct: 257 VAAIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGM 316

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++ L+ +++ F  +M  L     P ++ L  +L+ +L  R E
Sbjct: 317 RIVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALV-NGEPILLTLRKMLEVFLDFRVE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQ 427
            + RR+ + ++  + R  IL GLL+A   +D IIA+IR           +  R  L+E Q
Sbjct: 376 TIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARVQLQERHGLSEVQ 435

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ ++++  +
Sbjct: 436 ADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQDELAQLRDRHA 495

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVD 539
                  RRT   ++           +I  E   V+++  G+++ +           +  
Sbjct: 496 IP-----RRTEILDLGGG---LDDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRG 547

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
            +    +  +++K+ +  +  D +LL S  G +Y LPA  +       +   +  L+ + 
Sbjct: 548 KAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIP 607

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I +      ++    LL+++  G       S        G   + +   + +  V 
Sbjct: 608 REEMITSLLAVSEFNDDTDLLMLTQGGFIKRTRLSAFSNIRSNGLIAIGLEEGDALTWVR 667

Query: 655 K-VTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGGISDVICFKI----- 705
             V+GD V +       + F +  D++  + R  +GVR  + +DG     +         
Sbjct: 668 LAVSGDSVLIGSRAGMTIHFRLSDDELRPLGRTARGVRSMNLRDGDALVSMDVLPVELAD 727

Query: 706 ------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                              +G   + ++     +        L KR G+G    K    +
Sbjct: 728 RVAQSGDDDSDDDEAGAASDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDA 787

Query: 748 GKFLS 752
              + 
Sbjct: 788 DALVG 792



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLVVKV-TGDHVAVVG 665
               +LV S+ G    V  ++     R G     +K  ++ + +  +  +  G+ V +V 
Sbjct: 747 DGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADALVGLRVLGAGEEVLLVS 806

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           E   ++  S D IP+ SR   GVRLQ    G     +     E  +
Sbjct: 807 EKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEVVMVPPEAES 852


>gi|329944734|ref|ZP_08292813.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328529870|gb|EGF56760.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 893

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 240/777 (30%), Positives = 397/777 (51%), Gaps = 43/777 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ +  E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 15  TDVVTPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 74

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            A+F KS+R+VGEV+G  HPHGD ++YD+L RL Q +  RYPL++GQGNFG       AA
Sbjct: 75  TASFSKSSRVVGEVMGNYHPHGDSAIYDALARLVQWWSMRYPLVAGQGNFGTPGNLGPAA 134

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +L+ +DED+VDF+D Y+ ++ EPV+ P++FPNLL NG+ GIAVGMA
Sbjct: 135 PRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGKNQEPVILPARFPNLLVNGSEGIAVGMA 194

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYR 244
           T IP HN++EI   A   +++P+ S E+    L+E I GPDFPTG  I+  R  I ++YR
Sbjct: 195 TRIPPHNLREIARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYR 253

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE
Sbjct: 254 TGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDE 312

Query: 305 SA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++    + ++    R     +++ +++  + ++  FP NM  L    VP+ + LDG ++ 
Sbjct: 313 TSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVD-GVPRTLSLDGFVRH 371

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           W++H+ +V+ RRS FR++  + R+ IL+GLL A   +D +IA+IR     +         
Sbjct: 372 WVSHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMGL 431

Query: 423 --LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q +AIL+L+LR L  LE  +I+ E + L A  + +  ++ S ++Q   ++ E+ 
Sbjct: 432 LDVDEAQAEAILSLQLRRLAALERLKIQQESEELRARVKDLREIIASPERQRGIVSDELA 491

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-- 538
           E+ E +        RRT              + +I +E + V I+  G+ +  ++ S   
Sbjct: 492 EIVEKYGDE-----RRTRIVPFDGEMS---MEDLIPEEDVVVTITRSGYAKRTRTDSYRS 543

Query: 539 ------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AI 590
                  +     +E D +       T   +L  +  G+ Y      L  G    +   +
Sbjct: 544 QHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDSKGQHV 603

Query: 591 QLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+     ++I        YD    L++ + +G       SE  +N   G   + +  +
Sbjct: 604 ANLLAFQPGEEIAQVMELQDYDQADFLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQD 663

Query: 648 -----EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGIS 698
                +++     + TG  + +V    + L F  D   +    R   GV    +++    
Sbjct: 664 EDGNYDELVSARLLSTGQDLLLVSHAGQSLRFHADDDTLRPTGRATSGVTGMRFREDDYL 723

Query: 699 DVICFKIC--EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +       +           Y +  N +   +  RGG+G  V       G  + +
Sbjct: 724 LAMDVVDPSWQDADLFVVTEGGYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGA 780


>gi|254456167|ref|ZP_05069596.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083169|gb|EDZ60595.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211]
          Length = 859

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 247/811 (30%), Positives = 408/811 (50%), Gaps = 73/811 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  +    + N+K +S+   +   YL+YA+S I  RA+PD+RDG KPVHRRI++AM + G
Sbjct: 1   MQKTEIPKDNNIKLISMHDEMSSSYLSYAMSVIVSRALPDIRDGLKPVHRRILYAMYKGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   F+KSARIVG+VIGK HPHGDQSVYD+LVR+ Q F    PL+ GQGNFG+IDGD 
Sbjct: 61  YDWSKQFRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+++V++ ++  ++++ + F+  Y+E + EP V P+++PNLL NG  GIAV
Sbjct: 121 AAAMRYTETRLSKVSQYLIDDIEKNTISFKSNYDETEKEPTVLPAQYPNLLVNGAGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN+ EI    LALIDN +I I +L++Y+ GPDFPTGG ++  ++ I   Y  
Sbjct: 181 GMATSIPPHNLGEIINGTLALIDNKDIKIRELMKYVPGPDFPTGG-VIIGKDIIKHGYNN 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++R    VE +  G   +V+T IPYQV KS L E+IA+L+  K+I  ++DIRDES
Sbjct: 240 GRGSFKIRGEVSVESLKNGRERLVITSIPYQVNKSVLNERIAQLVREKKIEGIKDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V       ++P+ +   ++  + +E+ F  N   +     P+   L   L  +L
Sbjct: 300 NREGIRVAIDLRNGVEPETIKRQLYKNTQIESSFGFNTLAIV-QGKPKTCTLKDFLSNFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----- 420
           + R +++ +++ F +Q  + R  IL GL ++  N+D+II IIR+   P+    +      
Sbjct: 359 SFREDIVIKKTKFDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKTKW 418

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               +SL+E QV AIL LRL+ L  L   +I+ E+  L     +
Sbjct: 419 KINKSQKLISLVEGKKGKGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKLAELIAR 478

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              +++S K+    I+ E++ +KE F+       RRT   +   A      +  I+K+ +
Sbjct: 479 YKKIISSKKELLKVISEELKNIKEKFAVP-----RRTKIID---AVLNYDIEETIQKQSV 530

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            + ++ +G+I+          K      S +  ++ DS+   L  +T   +L  ST+G  
Sbjct: 531 IITVTLQGYIKRGSLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLV 590

Query: 573 YTLPAGNLLSGRGHGEAI--QLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAF 624
           Y + A  +  G    +      ++ L  +Q I +              +++  +++G   
Sbjct: 591 YKVKAWKIPEGSSSSKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVR 650

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MS 682
                +  +    GK  +K+ + +K+  V     D  + +  +  K + F   ++     
Sbjct: 651 KNSLEDFSSINASGKIAMKLDNNDKIVGVKICQDDQDIILSTKFGKCIRFEAKKLRVFKG 710

Query: 683 R-GKGVRLQSYKDGGISDVICFKICE-------------------GLTWIDSAGRSYNRS 722
           R  KG++            +     +                       +  +   Y + 
Sbjct: 711 RSSKGIKGIELAPNDQIVSLSVIDNDKTKKNGKKSKDDKSEIKAKEKFVLSISENGYGKK 770

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +   +  RGG G +     PR+G   SS
Sbjct: 771 TSHIDYRVTNRGGKGIIGIVNSPRNGNITSS 801



 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 26/209 (12%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                     ++    A+     D +           I+L +  GK     A  L   +G
Sbjct: 651 KNSLEDFSSINASGKIAMKLDNNDKIVGVKICQDDQDIILSTKFGKCIRFEAKKLRVFKG 710

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDST--------------------CKLLVVSSKGNAFI 625
                   I+L  N  IV+  V D+                       +L +S  G    
Sbjct: 711 RSSKGIKGIELAPNDQIVSLSVIDNDKTKKNGKKSKDDKSEIKAKEKFVLSISENGYGKK 770

Query: 626 VEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
               +     R GK  + +     +           GD + +     +++  ++ +I   
Sbjct: 771 TSHIDYRVTNRGGKGIIGIVNSPRNGNITSSFPVFEGDEILISTNKGRVIRVAVKEIRTA 830

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGL 709
            R  +GVR+     G    V   KI + L
Sbjct: 831 GRNTQGVRIIKL-SGEEKVVSAIKIDDNL 858


>gi|326794771|ref|YP_004312591.1| DNA topoisomerase IV, subunit alpha [Marinomonas mediterranea
           MMB-1]
 gi|326545535|gb|ADZ90755.1| DNA topoisomerase IV, A subunit [Marinomonas mediterranea MMB-1]
          Length = 756

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 297/757 (39%), Positives = 464/757 (61%), Gaps = 25/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ +       + +SL+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDLSNFESN--ETLSLKEYTEKAYLNYSMYVILDRALPHIGDGLKPVQRRIVYAMSELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 59  LKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 118

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ ++++L+ V +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 119 SFAAMRYTESRLSKYSDVLLREVSQGTVDWVPNFDGTLKEPSVLPARLPNLLLNGTTGIA 178

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++EI  A + L++NP+  +++LLE++ GPDFPTGG I+ SR  + + Y 
Sbjct: 179 VGMATDVPPHNLREIGNACVHLLNNPKAELDELLEHVQGPDFPTGGEIITSRSDLRKMYE 238

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           LG+G  + RAR+ +E+       IVV E+P+QV  S+++E++A  + AK++P++ D+RDE
Sbjct: 239 LGKGQVKARARYRIEDGE-----IVVYELPHQVSGSKVLEQVAAQMQAKKLPMVVDLRDE 293

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R V+ PK+  +D + +M  +F  +D+E  + +NMNV+ +  +PQV  L   +K
Sbjct: 294 SDHENPTRFVIVPKSSRVDTESVMTHLFATTDLEKSYRVNMNVIGLDGLPQVKGLRAFIK 353

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R +V+ +R  FR+  +  R+ IL+GLL+A+LNIDE+I IIRNEDKPK  ++ RF 
Sbjct: 354 EWLTFRIDVVRKRLQFRLDKVLNRLHILEGLLVAFLNIDEVIDIIRNEDKPKEELIKRFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+++Q +AIL L+LR L KLEE +IKSE D L  E+E++++LL S ++    I  EI+E 
Sbjct: 414 LSDSQAEAILELKLRHLAKLEEMRIKSEQDELNKEREQLEALLGSDRKLKKLITEEIKEA 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E F        RRT   E   A +A  ++ ++  +P+TVV+S +GWIR+ K H +D++ 
Sbjct: 474 IEDFGDE-----RRTPLIERKEA-QAFSEEDLLSNDPVTVVLSKQGWIRAAKGHDIDVTG 527

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD   ++    T   ++L++++G+ Y+L A  L S RG GE I   I L     I
Sbjct: 528 LSYKSGDEFLLSAKGRTNQTLVLIASNGRTYSLKAHTLPSARGQGEPITGRISLEKGATI 587

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
           V A +       L+ S  G  F+ +  ++ A  + GK  L + S  ++   VKV    GD
Sbjct: 588 VAAVLDSEEAHYLLASDAGYGFVAQLKDLYAKNKAGKATLSLPSNAEVISPVKVESPEGD 647

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            V VV    ++L FS+  +P+M++GKG ++ S           +   +       L    
Sbjct: 648 KVVVVSNEGRMLAFSVKSLPQMAKGKGNKMLSIPSSRAADREELVIAMATIQSNDLLVAH 707

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S  R  + +E DL  ++G+RG  G  +P+GF R    
Sbjct: 708 SGKRFLSLAEKDLQEYVGERGRRGLKLPRGFQRIDML 744


>gi|253576487|ref|ZP_04853816.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844124|gb|EES72143.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 810

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 226/761 (29%), Positives = 390/761 (51%), Gaps = 31/761 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN     L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      ++K
Sbjct: 3   ENFLPAFLEEVVGDRFGRYSKYIIQDRAIPDIRDGLKPVQRRILYAMYDSGNTPDKPYRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+V+G  HPHGD S+Y+ +VR+AQP+   + LI G GN+G+ D D AAA RYTEA
Sbjct: 63  SAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHALIDGHGNWGSQDDDPAAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +++  V F+D ++    EPVV P++FPNLL NG SGI+ G AT IP H
Sbjct: 123 RLSAIAMELLRDIEKRTVPFKDNFDNTAKEPVVLPARFPNLLVNGASGISAGFATEIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +A +AL++ PE+++E++  ++ GPDFPTGG I+   E I E+Y  G+G   +R+
Sbjct: 183 NLREVIDACIALMEKPEMTLEEIRLFVKGPDFPTGG-IIMGEEGIREAYETGKGRIYLRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV+TEIPYQV KSRL+  +  + + K++  + ++RDES  +   ++ 
Sbjct: 242 KTEIETLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVV 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +   + P+ + L  +L+ ++AH+REV+  
Sbjct: 302 ELKKDADAQGILAYLLKKTDLQVTYNFNMVAIV-NKAPRQLGLKAMLEAYIAHQREVVTY 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ + ++ ++ R  +L+GL+ A   +DE+IA I+        +  +   F  TE Q DAI
Sbjct: 361 RTQYELEKLEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQADAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+L  L  LE   ++ EL+++  +   +  +L S K+    I  E+ E+++ +     
Sbjct: 421 LTLQLYRLTNLEITTLQKELEDIQKKITVLRGILESDKKLIALIKRELIEIRDKYGID-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-----DLSALHFK 546
               R +  +    +     + ++ +E + V IS  G+I+     S      +      K
Sbjct: 479 ----RRSHIQDEVEELKVNLEVLVAQEDVLVTISREGYIKRTSMLSFTRSGGERDGSGVK 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           EGD +K  L   T   +L+ +  G+ + LP   +   +      AI  +I L     IV+
Sbjct: 535 EGDYIKYLLEVDTLQNLLIFTQRGQYFLLPVHQIPEFKWKDNGTAIVNVIPLAKEDRIVS 594

Query: 605 AFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTG 658
                    +    L+ V+  G     E  E            KV   +++  V V    
Sbjct: 595 VIPVKSFDENPELSLVFVTKNGQVKRTELKEYEKKRSGAVAACKVGDGDEVLSVTVSRNN 654

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + ++ +    + F+ D++  M R   GVR  + KD        +   E    +  +  
Sbjct: 655 QEILLLTKQGMAIRFAEDEVNPMGRVSAGVRGINLKDDDEVVSALWVEGEEGEVLVVSDL 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLV--PKGFPR---SG-KFLS 752
           +Y +    L   +  RGG G      K   R   +G + + 
Sbjct: 715 AYAKRSLLLDYPVQSRGGKGVQTFEFKEGKRVKPNGSRLVG 755



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 77/236 (32%), Gaps = 26/236 (11%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 R  +   V   D+      +   +   V  +        +S +V    +   +G
Sbjct: 585 PLAKEDRIVSVIPVKSFDENPELSLVFVTKNGQVKRTELKEYEKKRSGAVAACKVG--DG 642

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D +     +     ILLL+  G A    A + ++  G   A    I+L  + ++V+A   
Sbjct: 643 DEVLSVTVSRNNQEILLLTKQGMAIRF-AEDEVNPMGRVSAGVRGINLKDDDEVVSALWV 701

Query: 609 D-STCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMK--LVVKVTGDH--- 660
           +    ++LVVS    A      +    +R GK     +    +++K      V G H   
Sbjct: 702 EGEEGEVLVVSDLAYAKRSLLLDYPVQSRGGKGVQTFEFKEGKRVKPNGSRLVGGVHCKE 761

Query: 661 -VAV--VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
            V +  V +  ++  FS +  P              D          + +    +D
Sbjct: 762 PVLLQAVTKEGQMHTFSSEDAP------------IADRKSIGKAMMSVDKNDEIVD 805


>gi|254482759|ref|ZP_05095997.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214037118|gb|EEB77787.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 750

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 278/758 (36%), Positives = 446/758 (58%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++   + E+ ++ VSL+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTDVIEIDEDGIEQVSLKTYAEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   
Sbjct: 61  LKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSYRYPLVDGQGNWGSPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T  A+++L  + +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTESRLTAYADVLLSELGQGTVDWSPNFDGTMDEPTVLPAQVPNVLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+++P+ ++ +L E++  PDFPT   I+  RE I+  Y 
Sbjct: 181 VGMATDVPPHNLREVVAATIHLLESPKATVAELCEHVQAPDFPTDAEIITPREDIMAMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E        IVV+ +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGALKMRAVWEKE-----GPDIVVSALPHQVSGSKVLEQIAHQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++ + +M  +F  +D+E  + +N+N++ +   P V  LD ILK
Sbjct: 296 SDHENPTRLVIVPRSNRVEVEAVMNHLFATTDLERSYRVNLNMIGIDGRPGVKGLDRILK 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R E + RR  +R++ + RR+ IL G L+A+LNIDE+I IIR EDKPKP ++ RF 
Sbjct: 356 EWLKFRTETVRRRLEYRLERVLRRLHILDGYLVAFLNIDEVIHIIRTEDKPKPALMKRFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +++ Q +AIL+L+LR+L KLEE +I+ E D L  E++++ ++L S  +    I  E++ V
Sbjct: 416 ISDVQAEAILDLKLRNLAKLEEMKIRGEQDELEVERDQLQTILGSAARLKTLIKKELQSV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E F        RR+       A   +    M    PITVV+S +GWIR+ K H +D S+
Sbjct: 476 AEKFGD-----DRRSPLMARGEAQAFSELDLMTAD-PITVVMSEKGWIRAAKGHDIDPSS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K+A    +    ++L + G+AYT+P+ NL S RG GE +   I+       
Sbjct: 530 LSYKSGDGFKMAAKGRSNQPTVILDSTGRAYTVPSHNLPSARGQGEPVTGRINPPSGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + D     L+ S  G  F+ +  E+    + GK  L +     +     +    G 
Sbjct: 590 EGLMMGDEGDLYLLASDAGYGFVAKLGELQTKNKAGKGALNLPKGSGVMQPAAISEAEGA 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            VA V    +LL+F ++ +P+M+RGKG ++          ++  +  V      + L  +
Sbjct: 650 WVAAVTNEGRLLVFPLEDLPQMARGKGNKIIGIPTARVQSREEFVIAVQVLTDKDTL-VV 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R +    +DL  + G+RG  G+ +P+GF +    
Sbjct: 709 YAGKRHHKLKFSDLKHYCGERGRRGNKLPRGFQKVDAM 746


>gi|212715156|ref|ZP_03323284.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661837|gb|EEB22412.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM
           16992]
          Length = 894

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 225/771 (29%), Positives = 378/771 (49%), Gaps = 27/771 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++   +V E ++   L+  + + YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + G 
Sbjct: 30  TDYGLMVGERIQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGY 89

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D A
Sbjct: 90  RPDRGYSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPA 149

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVG
Sbjct: 150 AAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVG 209

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ E     +D+P+ S E+    L+  I GPDFPTG  I+   + I ++
Sbjct: 210 MATNIPPHNMREVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQA 268

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+V+TE+PYQV   RL+  I E +   +I  + D+R
Sbjct: 269 YRTGRGLITMRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMR 327

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  +
Sbjct: 328 DETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFI 386

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMV 418
           + W+ H+ EV+ RR+++  +  + R  IL+G L A   IDE+IA+IR  +     +  ++
Sbjct: 387 RHWVGHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAEVARTGLM 446

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + E Q DAIL ++LR L  LE  +I  E + L+      + +L   ++Q   +  E
Sbjct: 447 DLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYNDILAKPERQRKIVGDE 506

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+   +           +         A     +       +  +     R+      
Sbjct: 507 LDEIVSKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKRTKADEYRAQHRGGK 566

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y L A  L  G    +   +  L+  
Sbjct: 567 GIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVANLLQF 626

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I T      Y+    L++ +  G       +E  +  + G   +++ ++      
Sbjct: 627 GPDETIQTVLSIPNYEVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLMADENGENA 686

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG-ISDVIC 702
           +++         D + +V +    L F  +   +  M R   GV+   +++G  + D+  
Sbjct: 687 DELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMGRQTAGVQGMKFREGDELLDMDV 746

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                           + +        L  R G G    +     G  + +
Sbjct: 747 VWGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGRGSLVGA 797


>gi|288940944|ref|YP_003443184.1| DNA topoisomerase IV subunit A [Allochromatium vinosum DSM 180]
 gi|288896316|gb|ADC62152.1| DNA topoisomerase IV, A subunit [Allochromatium vinosum DSM 180]
          Length = 748

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 284/754 (37%), Positives = 437/754 (57%), Gaps = 23/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     E ++   L+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MPDTAIYTAEGLERRPLKDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRILYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G+ D   
Sbjct: 61  LSATAKFKKSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T  AEL+L   D+  +D++  ++    EP + P++ PNLL NG +GIA
Sbjct: 121 SFAAMRYTESRLTPYAELLLAEADQGTIDWQPNFDGTLDEPRLLPARLPNLLLNGATGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP+HN++E+  A + L+++P+ ++E L+  I  PDFPT   IV   + I++ YR
Sbjct: 181 VGMATDIPAHNLREVARACIHLLEHPDATLEDLVRIIPAPDFPTEAEIVTPADEILKLYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RAR+  E+       IV+T +PYQV  SR++E+IA    AK++P++ED RDE
Sbjct: 241 TGNGSLRQRARYTREQGD-----IVITALPYQVSGSRVLEQIAAQFNAKKLPMIEDFRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N++++   P+VM L  IL 
Sbjct: 296 SDHEYPTRLVIVPRSNRVDVERLMSHLFATTDLERSYRVNLNLIALNGRPRVMDLREILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R E + RR   R++ +  R+ +L GLLIA+LN+DE+I I+R ED+P+PV++ RF 
Sbjct: 356 EWLIYRTETVRRRLQHRLEKVLERLHLLDGLLIAFLNLDEVIRIVRTEDEPRPVLMERFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D +LN RLR L +LEE +I++E   L AE++ +  LL   +     +  EI   
Sbjct: 416 LTEPQADYVLNTRLRQLARLEEMKIRAEQAELAAERDGLQRLLGDERALKGLVRDEIAAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +  +     RR+   E + A  A  +  +   EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AERYGDA-----RRSPLVERAAA-AAIDETELTPSEPLTVVLSEKGWVRAAKGHEVDATT 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++ GD+        +    + L + G++Y LPA    S RG GE +   +D       
Sbjct: 530 LSYRAGDAFLSLARLRSNQTAVFLDSTGRSYALPAHTFPSARGQGEPLTGRLDPPPGARF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---VTGD 659
           VT    ++  + L+ S  G  FIV   E+IA  + GK  L +    ++   V+   + G 
Sbjct: 590 VTVLGDNAETRYLLASDAGYGFIVRFDELIAKPKGGKAVLTLPDGARLLDPVRIAGIEGS 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------DGGISDVICFKICEGLTWID 713
            VA V     LL+F + ++PEM+RGKG ++          +G     +          + 
Sbjct: 650 SVAAVTTAGHLLLFPLAELPEMARGKGNKIIGIPAGRAGAEGERLIAVAVVGEGANLTVL 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           S  R       DL  + G+RG  G L+P+GF R 
Sbjct: 710 SGKRELTLKPADLALYRGERGRRGKLLPRGFQRV 743


>gi|71277810|ref|YP_270822.1| DNA topoisomerase IV subunit A [Colwellia psychrerythraea 34H]
 gi|71143550|gb|AAZ24023.1| DNA topoisomerase IV, A subunit [Colwellia psychrerythraea 34H]
          Length = 769

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 263/757 (34%), Positives = 441/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++     + V+ V LR   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDALEYSLDGVEQVPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ +E++L  + +  VD++  ++    EP   P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTESRLSRFSEVLLAELGQGTVDWQPNFDGTMQEPKTLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+ +A + LI+NP+  +  LLE++ GPD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVADACVHLIENPKAEVSDLLEFVKGPDYPTDAEIITPKAEIEKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIRMRAVYDVEQGD-----IVITSLPHQASGGKILEQIAGQMTAKKLPMVVDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM+ +F  +D+E  + +N+N++ +   P V  L  IL 
Sbjct: 296 SDHENPVRLVIIPRSNRVDVEQLMQHLFASTDLEKSYRVNINMIGLDNRPAVKNLLVILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +RRE + RR  +R+  +  R+ IL GLL+AYLNIDE+I IIR  D PK  ++SRF+
Sbjct: 356 EWLEYRRETVRRRLQYRLDKVLARLHILDGLLVAYLNIDEVIEIIRGYDDPKAELMSRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  +IL ++LR L KLEE +I++E D L  E++ ++ +LNS  +    +  EI   
Sbjct: 416 LSDTQAHSILEIKLRQLAKLEEIKIRAEQDELRIEQDYLEKILNSKARMSTLMKKEILAA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E S + KA  ++ ++  E +TVV+S++GW R  K H +D ++
Sbjct: 476 AEQYGD-----DRRSQLVERSES-KALTEKDLVPSEAVTVVVSDKGWARCAKGHDIDPTS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    A    +   ++ + +DG+A+T  A  L + R  GE +    +L+  +  
Sbjct: 530 LSYKAGDGYLCASKGRSNRPVVFIGSDGRAFTTDAHTLPTARSQGEPLTGRFNLSTGKTF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
           V + + D   + L+VS  G  F+    ++++  + GK  + +    K+ +   +     D
Sbjct: 590 VHSIMSDDDAQYLLVSDAGYGFVSSFGDMVSRNKNGKALISLPEAAKVLMPQCINNIEND 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
           +   +    ++L+F +  +P +S+GKG ++ +              ++C         + 
Sbjct: 650 NCLTITSEGRMLVFPVKNLPVLSKGKGNKIINIPSARSKLREEFVSLLCIIPEGAAITLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R       D+  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKAADIEHYKGERGRRGNKLPRGLQRVSAV 746


>gi|239916577|ref|YP_002956135.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
 gi|281414959|ref|ZP_06246701.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
 gi|239837784|gb|ACS29581.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
          Length = 898

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 236/761 (31%), Positives = 384/761 (50%), Gaps = 32/761 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L   ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G     AF K
Sbjct: 42  DKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRAFNK 101

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G  HPHGD ++YD+LVRL Q +VQRYPL  GQGNFG+   D AAA RYTE 
Sbjct: 102 SARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQRYTET 161

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +DED VD +D Y+ +  EPVV P+++PNLL NG+SGIAVGMAT+IP H
Sbjct: 162 KMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMATNIPPH 221

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       +++PE + E+LLE     + GPDFPTG  I+  R+ I E YR GRG  
Sbjct: 222 NMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQIL-GRKGIEEVYRTGRGPI 280

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA   VEE+ +G  C+VVTE+PY      L  KIAE++   +I  + D+RDE++    
Sbjct: 281 TMRAVVNVEEI-QGRTCLVVTELPYMTNPDNLAAKIAEMVRDGKISGIADMRDETSGRTG 339

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  +++++ F  NM  L    VP+ + LDG +  W+ H+ 
Sbjct: 340 QRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVD-GVPRTLSLDGFVHHWVKHQI 398

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +V+ RR++FR +  + R  IL+GLL A   +DE+IA IR        +  +     + + 
Sbjct: 399 DVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKELLDIDDV 458

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL ++LR L  LE  +I+ E D+L+A+  + + +L S ++Q   I+ E+ E+    
Sbjct: 459 QAQAILQMQLRQLAALESQKIQDEYDDLMAKIAEYNRILESPQRQREVISEELAEIVAKH 518

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV------ISNRGWIRSLKSHSVDL 540
                   RRT        D +       E+  +++        +     RS       +
Sbjct: 519 GD-----DRRTEIMAGFDGDMSIEDLIPEEEMVVSITRGGYVKRTRIDQYRSQARGGKGV 573

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                +  D ++  L   T   +L  +  G+ Y +    LL      +   +  L+    
Sbjct: 574 RGATLRGDDVVEHFLTVSTHHWLLFFTNFGRVYRIKTYELLEAGRDAKGQHVANLLAFQP 633

Query: 599 NQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ I              L++ +  G        +   N   G   +K+   +++     
Sbjct: 634 DERIAQIQPLVDYGRAPYLVLATRGGLVKKTPLLDYDTNRTAGLIAIKLREGDELVSARV 693

Query: 656 VT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTW 711
           V+  D + ++    + L F+     +  M R   GV    ++D   S +    + E    
Sbjct: 694 VSPDDDLILISHKGQSLRFTATDEALRPMGRATSGVTGMKFRDDD-SLLTMDVVEEDGYV 752

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  + +  +     L  RGG+G  V K     G+   
Sbjct: 753 FTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAG 793



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 6/180 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQL 592
            + +  L A+  +EGD L  A      D ++L+S  G++    A +      G   +   
Sbjct: 671 TNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALRPMGRATSGVT 730

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEK 649
            +    +  ++T  V +    +  V+  G A      E     R G   K    V    +
Sbjct: 731 GMKFRDDDSLLTMDVVEEDGYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKLVDDRGE 790

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +   + V  D  V VV  + K++  ++  +P   R   GV             +     +
Sbjct: 791 LAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAVTLNNEQ 850


>gi|289706938|ref|ZP_06503273.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
 gi|289556263|gb|EFD49619.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
          Length = 898

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 236/761 (31%), Positives = 384/761 (50%), Gaps = 32/761 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L   ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G     AF K
Sbjct: 42  DKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRAFNK 101

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G  HPHGD ++YD+LVRL Q +VQRYPL  GQGNFG+   D AAA RYTE 
Sbjct: 102 SARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQRYTET 161

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +DED VD +D Y+ +  EPVV P+++PNLL NG+SGIAVGMAT+IP H
Sbjct: 162 KMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMATNIPPH 221

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       +++PE + E+LLE     + GPDFPTG  I+  R+ I E YR GRG  
Sbjct: 222 NMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQIL-GRKGIEEVYRTGRGPI 280

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA   VEE+ +G  C+VVTE+PY      L  KIAE++   +I  + D+RDE++    
Sbjct: 281 TMRAVVNVEEI-QGRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIADMRDETSGRTG 339

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  +++++ F  NM  L    VP+ + LDG +  W+ H+ 
Sbjct: 340 QRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVD-GVPRTLSLDGFVHHWVKHQI 398

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +V+ RR++FR +  + R  IL+GLL A   +DE+IA IR        +  +     + + 
Sbjct: 399 DVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKELLDIDDV 458

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL ++LR L  LE  +I+ E D+L+A+  + + +L S ++Q   I+ E+ E+    
Sbjct: 459 QAQAILQMQLRQLAALESQKIQDEYDDLMAKIAEYNRILESPQRQREVISEELAEIVAKH 518

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV------ISNRGWIRSLKSHSVDL 540
                   RRT        D +       E+  +++        +     RS       +
Sbjct: 519 GD-----DRRTEIMAGFDGDMSIEDLIPEEEMVVSITRGGYVKRTRIDQYRSQARGGKGV 573

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                +  D ++  L   T   +L  +  G+ Y +    LL      +   +  L+    
Sbjct: 574 RGATLRGDDVVEHFLTVSTHHWLLFFTNFGRVYRIKTYELLEAGRDAKGQHVANLLAFQP 633

Query: 599 NQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ I              L++ +  G        +   N   G   +K+   +++     
Sbjct: 634 DERIAQIQPLVDYGRAPYLVLATRGGLVKKTPLLDYDTNRTAGLIAIKLREGDELVSARV 693

Query: 656 VT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTW 711
           V+  D + ++    + L F+     +  M R   GV    ++D   S +    + E    
Sbjct: 694 VSPDDDLILISHKGQSLRFTATDEALRPMGRATSGVTGMKFRDDD-SLLTMDVVEEDGYV 752

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  + +  +     L  RGG+G  V K     G+   
Sbjct: 753 FTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAG 793



 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 6/180 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQL 592
            + +  L A+  +EGD L  A      D ++L+S  G++    A +      G   +   
Sbjct: 671 TNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALRPMGRATSGVT 730

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEK 649
            +    +  ++T  V +    +  V+  G A      E     R G   K    V    +
Sbjct: 731 GMKFRDDDSLLTMDVVEEDGYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKLVDDRGE 790

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +   + V  D  V VV  + K++  ++  +P   R   GV             +     +
Sbjct: 791 LAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAVTLNNEQ 850


>gi|269960216|ref|ZP_06174591.1| DNA topoisomerase 4 subunit A [Vibrio harveyi 1DA3]
 gi|269835023|gb|EEZ89107.1| DNA topoisomerase 4 subunit A [Vibrio harveyi 1DA3]
          Length = 762

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 276/754 (36%), Positives = 445/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  +++++ GPD+PT   I   +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEITSPQADIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L +
Sbjct: 477 YGD-----DRRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + +   +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDNYLAHARGKSNQQAVFFGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ + SE+++  R GK  + + +  ++     +     D + 
Sbjct: 591 IMGEDEQLWLVGSDAGYGFVCKGSELLSKNRSGKALVTLPANSEVMTPKTIADLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++++GKG ++ +      K+          + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLMALPQGASLTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  GSL+P+G  R  + 
Sbjct: 711 RKLGLKPADLENFRGERGRRGSLLPRGLQRVTRI 744


>gi|326772838|ref|ZP_08232122.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
 gi|326637470|gb|EGE38372.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
          Length = 893

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 242/777 (31%), Positives = 395/777 (50%), Gaps = 43/777 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +N    E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 15  TNVAAPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 74

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            A+F KS+RIVG+V+G  HPHGD ++YD+L RL Q +  RYPL++GQGNFG       AA
Sbjct: 75  TASFSKSSRIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAA 134

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +L+ +DED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMA
Sbjct: 135 PRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMA 194

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYR 244
           T IP HN++E+   A   +++P+ S E+    L+E I GPDFPTG  I+  R  I ++YR
Sbjct: 195 TRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYR 253

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE
Sbjct: 254 TGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDE 312

Query: 305 SA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++    + ++    R     +++ +++  + ++  FP NM  L    VP+ + LDG ++ 
Sbjct: 313 TSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVD-GVPRTLSLDGFVRH 371

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           W+AH+ +V+ RRS FR++  + R+ IL+GLL A   +D +IA+IR     +         
Sbjct: 372 WVAHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMGL 431

Query: 423 --LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q +AIL+L+LR L  LE  +I+ E + L A  + +  ++ S ++Q   ++ E+ 
Sbjct: 432 LDVDEAQAEAILSLQLRRLAALERLKIQEESEELRARVKDLREIIASPERQRGIVSDELA 491

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-- 538
           E+ E +        RRT              + +I +E + V I+  G+ +  ++ S   
Sbjct: 492 EIVEKYGDE-----RRTRIVPFDGEMS---MEDLIPEEDVVVTITRSGYAKRTRTDSYRS 543

Query: 539 ------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AI 590
                  +     +E D +       T   +L  +  G+ Y      L  G    +   +
Sbjct: 544 QHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDSKGQHV 603

Query: 591 QLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+     ++I        YD    L++ + +G       SE  +N   G   + +  +
Sbjct: 604 ANLLAFQPGEEIAQVMELQDYDQADYLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQD 663

Query: 648 -----EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGIS 698
                +++     + TG  + +V    + L F  D   +    R   GV    +++    
Sbjct: 664 EEGNYDELVSARLLSTGQDLLLVSRAGQSLRFHADDDTLRPTGRATSGVTGMRFREDDYL 723

Query: 699 DVICFKIC--EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +       +           Y +  N +   +  RGG+G  V       G  + +
Sbjct: 724 LAMDVVDPSWQDADLFVVTEGGYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGA 780


>gi|219668704|ref|YP_002459139.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219538964|gb|ACL20703.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2]
          Length = 808

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 243/761 (31%), Positives = 402/761 (52%), Gaps = 27/761 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ EEN+   SL   L E YL Y+   I +RA+PD+RDG KPVHRRII+AM E+G+    
Sbjct: 2   SIPEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR+VG+ +GK HPHGD S+YD+ VR+AQP+  RYPLI GQGNFG+IDGD AAA R
Sbjct: 62  PYSKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RMT +++L+ Q +++D + F+  Y++ + EP+V PS FPNLL NG SGIAVGMA++
Sbjct: 122 YTEMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+  A +  IDNP +++E+L+E + GPDFPTGG ++   +   E+YR GRG  
Sbjct: 182 IPPHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGG-LIIGSQGFTEAYRSGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R +  +E    G   IV+TEIP+QV KS L  KI       +I  + ++RDES  +  
Sbjct: 241 TMRGKAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  DP  +++ ++  + ++  F +   V+S    P+V+ L  I   +L HRRE
Sbjct: 301 RLVVECKKDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINHSYLQHRRE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ + +     R  IL+GL+IA  N+DE++ IIR+   P   K  +++RF  +E Q
Sbjct: 361 VVLRRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITRFEFSEVQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE   I+ E   +L    +++S+L    + +  I  E++++ + + 
Sbjct: 421 AQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESILADINKVYTIIKNELKQIADQYG 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR----SLKSHSVDLSAL 543
                  RRT        D+         ++P+ V+++ +G+I+      +   ++  A 
Sbjct: 481 DE-----RRTLILPEDVGDEVDYSAFEEPEKPMEVLLTRKGFIKQIPTPTRRSQINAIAF 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
            FK+GD L   +   + D +   +  GK Y   A  +       +  A+  L  L   + 
Sbjct: 536 AFKDGDVLLEHVSCTSKDTLYFFTHSGKYYDAKAKLVAEAGAKEKGRAVNNLFPLPEEER 595

Query: 602 IVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           IV              + V+  G        + +         + +  ++++  V    G
Sbjct: 596 IVAMVSLREEKEGQYFVFVTKDGQVMRSPVKDFLNARTA--EAMGLKEQDEIVKVFLSAG 653

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICF---KICEGLTWI 712
           +  + +     + + F+  ++  M R  +GV+  +  +G  + D +        E    I
Sbjct: 654 EGELFLASLQGQAIRFAEAEVNPMGRKSRGVKGMTLNEGDYVVDALLIQPGADGETGDLI 713

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF-PRSGKFLS 752
               + Y +  +        R G G  + K    ++G  +S
Sbjct: 714 TVTEQGYVKRTSLEEYKPQGRAGRGIAIAKIDAEKTGYLVS 754


>gi|330951454|gb|EGH51714.1| DNA topoisomerase IV subunit A [Pseudomonas syringae Cit 7]
          Length = 751

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 260/757 (34%), Positives = 435/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL+S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   +P+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTQPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F I  +P++ +GKG ++       ++        +          + 
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQGATLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 710 AGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|332162974|ref|YP_004299551.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667204|gb|ADZ43848.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862272|emb|CBX72433.1| DNA topoisomerase 4 subunit A [Yersinia enterocolitica W22703]
          Length = 758

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 283/756 (37%), Positives = 445/756 (58%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSD---LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+EI +A LALID P  S+E+LLE++ GPDFPT   I+  R  I + Y+
Sbjct: 178 VGMATDIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 SGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ RF+
Sbjct: 353 EWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQRFA 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AAAYGD-----DRRSPLTEREEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    +   ++ + + G++Y L    L S RG GE +   + L    +I
Sbjct: 527 LSYKAGDSFRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGANI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G    
Sbjct: 587 EHVLMAADDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGSDDM 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDS 714
           +  +    ++L+F +  +PE+S+GKG ++ S      +        +     +    +  
Sbjct: 647 LLSITAAGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHF 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  GS +P+G  R  + 
Sbjct: 707 GKRKLTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|87124805|ref|ZP_01080653.1| DNA gyrase A subunit [Synechococcus sp. RS9917]
 gi|86167684|gb|EAQ68943.1| DNA gyrase A subunit [Synechococcus sp. RS9917]
          Length = 891

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 233/794 (29%), Positives = 389/794 (48%), Gaps = 66/794 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQSFSMSMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+I
Sbjct: 135 ESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    LALI+NPE+    L+  I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 195 PPHNLGELINGLLALIENPELDDNALMRIIPGPDFPTGGQIL-GRSGIRETYLTGRGSVT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++TE+PYQ  K+ LIE+IAE++  K++  + DIRDES  
Sbjct: 254 MRGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  +M  L     P ++ L  +L+ +L  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALV-NGEPILLTLRKMLEVFLDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLT 424
           R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L+
Sbjct: 373 RVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQERHGLS 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ ++++
Sbjct: 433 EIQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGLIQEELTQLRD 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SH 536
            +        RRT   +++          +I  E   V+++  G+++ +           
Sbjct: 493 RYPIE-----RRTEILDLAGG---LDDIDLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
           +   +    +  +++K+ +  +  D +LL S  G AY LPA  +       +   +  L+
Sbjct: 545 TRGRAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I +      ++    LL+++  G       S        G   + +   + + 
Sbjct: 605 PIPREELITSLLAVSAFNDDTDLLMLTQGGYIKRTRLSAFSNIRSNGLIAIGLEDGDALT 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICF---- 703
            V   V GD V +       + F +    +  + R  +GVR  + ++G     +      
Sbjct: 665 WVRLAVPGDSVLIGSRAGMTIHFRLSDEELRPLGRTARGVRSMNLREGDALVSMDVLPVE 724

Query: 704 -----------------------KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                                     EG   + ++     +        L KR G+G   
Sbjct: 725 LADRVAQSSDDGGEAEADAEDGPTASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRA 784

Query: 741 PKGFPRSGK--FLS 752
            K   R+     + 
Sbjct: 785 IKF--RTDSDVLVG 796



 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSEEKMKLVVKV--TGDHVAVVG 665
               +LV S+ G    V  ++     R G     +K  ++  + + ++V   G+ V +V 
Sbjct: 751 EGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAIKFRTDSDVLVGLRVLGAGEEVLLVS 810

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKICEGLT 710
           E   ++  S D IP+ SR   GVRLQ    G  +S+V+         
Sbjct: 811 EKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEVVLVPPAPEED 857


>gi|261338541|ref|ZP_05966425.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093]
 gi|270276562|gb|EFA22416.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093]
          Length = 917

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 224/771 (29%), Positives = 377/771 (48%), Gaps = 27/771 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++   L  E ++ V L+  + E YL+YALS I ERA+PD+RDG KPVHRR+++AM + G 
Sbjct: 32  TDYGLLTGERIQPVDLQVEMRESYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGY 91

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D A
Sbjct: 92  RPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPA 151

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  ++  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVG
Sbjct: 152 AAMRYTECRMAPLSMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVG 211

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ +     +D+P+ + E+    L+  I GPDFPTG  I+   + I ++
Sbjct: 212 MATNIPPHNLREVADGVHWALDHPDATREELLEALIARIKGPDFPTGATIL-GHKGIEQA 270

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+R
Sbjct: 271 YRTGRGLITMRAVVNTEEIN-GRMCLVVTELPYQVNPDRLVVSIREGVRDGKIQGIADMR 329

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  +
Sbjct: 330 DETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFI 388

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + W+AH+ +V+ RR+++  +  + R  IL+G L A   IDE++A+IR+    +       
Sbjct: 389 RHWVAHQIDVVARRTAYLKREAEERDHILQGYLKALDMIDEVVALIRSSRDAETARTGLM 448

Query: 422 ---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + E Q DAIL ++LR L  LE  +I  E + L+      + +L   ++Q   +  E
Sbjct: 449 DLLDVDEVQADAILAMQLRRLAALERQKIMDEHNELMRRIADYEDILAKPERQRQIVGDE 508

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+   +           +         A     +       +  +     R+      
Sbjct: 509 LDEIVSRYGDERRTRILPYSGEMNVEDLIAEENVVVTVTHAGFIKRTKADEYRAQHRGGK 568

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y L A  L  G    +   +  L+  
Sbjct: 569 GIKGTKLREDDVVDHFFLTSTHNWLLFFTDKGRVYRLKAYELPEGSRDSKGQHVANLLQF 628

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I T      Y+    L++ +  G       SE  +  + G   +++ ++      
Sbjct: 629 APDEHIQTVLSIPNYEVAEYLVLATKSGKVKKTRLSEYDSPRQGGLIAVRLMTDENGEHA 688

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGG-ISDVIC 702
           +++         D + +V      L F    DQ+  M R   GV+   +++G  +  +  
Sbjct: 689 DELIGANLCNDTDDIVLVSRKGMSLKFKADNDQLRPMGRQTAGVQGMKFREGDSLLSMDV 748

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                           + +        L  R G G    +     G+ + +
Sbjct: 749 VWGQTDKDLFVVTNEGFAKRTAISEYRLQGRNGYGVKALQLVEGRGELVGA 799


>gi|302189668|ref|ZP_07266341.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           642]
          Length = 751

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 261/757 (34%), Positives = 435/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL+S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F I  +P++ +GKG ++       ++        +          + 
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQGATLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 710 AGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|330899874|gb|EGH31293.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330979119|gb|EGH78028.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 751

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 261/757 (34%), Positives = 434/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F I  +P++ +GKG ++       ++        +          + 
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQGATLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 710 AGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|289705901|ref|ZP_06502280.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
 gi|289557386|gb|EFD50698.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
          Length = 898

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 236/761 (31%), Positives = 384/761 (50%), Gaps = 32/761 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L   ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G     AF K
Sbjct: 42  DKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRAFNK 101

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G  HPHGD ++YD+LVRL Q +VQRYPL  GQGNFG+   D AAA RYTE 
Sbjct: 102 SARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQRYTET 161

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +DED VD +D Y+ +  EPVV P+++PNLL NG+SGIAVGMAT+IP H
Sbjct: 162 KMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMATNIPPH 221

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       +++PE + E+LLE     + GPDFPTG  I+  R+ I E YR GRG  
Sbjct: 222 NMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQIL-GRKGIEEVYRTGRGPI 280

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA   VEE+ +G  C+VVTE+PY      L  KIAE++   +I  + D+RDE++    
Sbjct: 281 TMRAVVNVEEI-QGRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIADMRDETSGRTG 339

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  +++++ F  NM  L    VP+ + LDG +  W+ H+ 
Sbjct: 340 QRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVD-GVPRTLSLDGFVHHWVKHQI 398

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +V+ RR++FR +  + R  IL+GLL A   +DE+IA IR        +  +     + + 
Sbjct: 399 DVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKELLDIDDV 458

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL ++LR L  LE  +I+ E D+L+A+  + + +L S ++Q   I+ E+ E+    
Sbjct: 459 QAQAILQMQLRQLAALESQKIQDEYDDLMAKIAEYNRILESPQRQREVISEELAEIVAKH 518

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV------ISNRGWIRSLKSHSVDL 540
                   RRT        D +       E+  +++        +     RS       +
Sbjct: 519 GD-----DRRTEIMAGFDGDMSIEDLIPEEEMVVSITRGGYVKRTRIDQYRSQARGGKGV 573

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
                +  D ++  L   T   +L  +  G+ Y +    LL      +   +  L+    
Sbjct: 574 RGATLRGDDVVEHLLTVSTHHWLLFFTNFGRVYRIKTYELLEAGRDAKGQHVANLLAFQP 633

Query: 599 NQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ I              L++ +  G        +   N   G   +K+   +++     
Sbjct: 634 DERIAQIQPLVDYGRAPYLVLATRGGLVKKTPLLDYDTNRTAGLIAIKLREGDELVSARV 693

Query: 656 VT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTW 711
           V+  D + ++    + L F+     +  M R   GV    ++D   S +    + E    
Sbjct: 694 VSPDDDLILISHKGQSLRFTATDEALRPMGRATSGVTGMKFRDDD-SLLTMDVVEEDGYV 752

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  + +  +     L  RGG+G  V K     G+   
Sbjct: 753 FTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAG 793



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 6/180 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQL 592
            + +  L A+  +EGD L  A      D ++L+S  G++    A +      G   +   
Sbjct: 671 TNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALRPMGRATSGVT 730

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEK 649
            +    +  ++T  V +    +  V+  G A      E     R G   K    V    +
Sbjct: 731 GMKFRDDDSLLTMDVVEEDGYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKLVDDRGE 790

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +   + V  D  V VV  + K++  ++  +P   R   GV             +     +
Sbjct: 791 LAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAVTLNNEQ 850


>gi|119470527|ref|ZP_01613230.1| DNA topoisomerase IV subunit A [Alteromonadales bacterium TW-7]
 gi|119446228|gb|EAW27505.1| DNA topoisomerase IV subunit A [Alteromonadales bacterium TW-7]
          Length = 765

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 269/758 (35%), Positives = 446/758 (58%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++TL+ + ++  ++    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L+ + +  VD+   ++    EPVV PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTLDEPVVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+D P+  +++LLE +  PD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELDELLELVHAPDYPTDAEIITPKADIHKIYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  E+       IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYSEEQGD-----IVITALPHQCSGGKVLEQIAAQMNAKKLPMIADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRSILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR  +R+  +  R+ IL+GLL A+LNIDE+I IIR+EDKPKP+++ RF 
Sbjct: 356 EWLIFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPILMQRFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I+ E D L  E++K++  L S ++    +  EI+E 
Sbjct: 416 LTDIQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLELTLGSDRRMSTLLKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E S A KA  ++ +I  E +TVV+S++GW R  K H +D   
Sbjct: 476 AEMYGD-----DRRSPVIERSEA-KALNEKDLIPSESVTVVLSDKGWARVGKGHDLDAQG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++ GD+ + +    +    + L + G+A+   A +L S R  GE +    +L    + 
Sbjct: 530 LSYRSGDAYRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTTGANF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + + +  LL+ S  G  FI +  ++++  + GK  + V     +   ++V+    D
Sbjct: 590 EHVVMAEDSQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGILLKPIRVSDVASD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI------SDVICFKICEGLTWID 713
           +   +    ++L+F +  +P++ +GKG ++ S     +        V+          + 
Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPLGSSVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  R       DL  + G+RG  G+ +P+G  R  + +
Sbjct: 710 AGKRKLTLKPTDLEHYHGERGRRGNKLPRGLQRVDEAV 747


>gi|229588056|ref|YP_002870175.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens SBW25]
 gi|229359922|emb|CAY46776.1| topoisomerase IV subunit A [Pseudomonas fluorescens SBW25]
          Length = 754

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 268/759 (35%), Positives = 437/759 (57%), Gaps = 25/759 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+      + V+  SL    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDILADSLDGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP+V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI--PLLEDIR 302
            G+G  R+RA + +E+       I+VT +P+QV  ++++E+IA L+ AK    P + D+R
Sbjct: 241 TGKGSVRMRAVYHIEDGD-----IIVTALPHQVSGAKVLEQIAALMQAKPSKLPQVADLR 295

Query: 303 DESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES  +   RIV+ P N  +D ++LM+ +F  +++E+ + +N+N++ +   PQ+  L  +
Sbjct: 296 DESDHENPCRIVIIPTNSRVDHEVLMQHLFASTELESSYRVNVNIIGLDGKPQLKNLRNL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL  R   + RR  FR+  ++RR+ +L GLLIAYLN+DE+I IIR  + PK  +++R
Sbjct: 356 LVEWLEFRINTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTAEHPKAELIAR 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q D IL+ RLR L +LEE +++ E D LL E+ K+ +LL S  +    +  E+ 
Sbjct: 416 FELSEIQADYILDTRLRQLARLEEMKLRDEQDALLKEQAKLQALLGSEAKLKKLVRSELI 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           +  E +        RR+   + + A   T  +  +  E ITVV+S +GW+RS K H +D 
Sbjct: 476 KDAETYGD-----DRRSPIVQRAEAKALTETEL-LPNEKITVVLSEKGWVRSAKGHDIDA 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           + L +K GD  K A    +    + + + G++Y++PA  L S RG GE +   +      
Sbjct: 530 TGLSYKAGDGFKTAAAGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGRLTPPPGA 589

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
           +     + D     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V    
Sbjct: 590 NFECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVILPRPVDDRE 649

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTW 711
            + +A V    +LL+F I  +P++ +GKG ++       ++        I          
Sbjct: 650 SNWLASVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDIAVIPEGSTLV 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           + +  R+ +   +DL  + G+RG  G+ +P+GF R    
Sbjct: 710 LQAGKRTLSLRPDDLEHYKGERGRRGNKLPRGFQRVDAL 748


>gi|85713134|ref|ZP_01044167.1| DNA topoisomerase IV subunit A [Idiomarina baltica OS145]
 gi|85693050|gb|EAQ31015.1| DNA topoisomerase IV subunit A [Idiomarina baltica OS145]
          Length = 760

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 267/751 (35%), Positives = 436/751 (58%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E  +   L    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A 
Sbjct: 1   MSSEVTERTPLSKFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSALAK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  R+PL+ GQGN+G+ D   S AA R
Sbjct: 61  YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRHPLVDGQGNWGSPDDPKSFAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+++  +E++L  + +  VD+   ++    EP + P++ P++L NG +GIAVGMAT 
Sbjct: 121 YTEAKLSHFSEVLLSELGQGTVDWIPNFDGTMREPKMLPARLPHILLNGVTGIAVGMATD 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +E+  A   LID P   +++++E++ GPD+PT   I+  +  + + Y  GRG  
Sbjct: 181 IPPHNAREVANACALLIDRPSADLDEVMEHLQGPDYPTDAEIITPKADLKKLYESGRGTI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           ++RA++ +EE       IV+T +P+Q   ++++E+IA  + AK++PL+ D+RDES  +  
Sbjct: 241 KMRAKYHLEE-----NEIVLTALPHQASGAKVLEQIAAQMQAKKLPLVSDLRDESDHENP 295

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + LM+ +F  +D+E ++ +N+N+L +   PQV PL GIL EWL  R
Sbjct: 296 TRLVVVPRSNRVDTEQLMKHLFATTDLEKQYRVNLNILGLDGRPQVKPLVGILGEWLEFR 355

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           ++ + RR  +R+  ++ R+ IL+GLLIA+LNIDE+I IIR ED+PK  ++ RF+LT+ Q 
Sbjct: 356 KQTVTRRLQYRLDKVEARLHILQGLLIAFLNIDEVIEIIRYEDEPKKELIKRFALTDTQA 415

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L +LEE ++K E + L  E+EK+  LLNS ++    I  EI    E +  
Sbjct: 416 EAILELKLRHLARLEEMKLKGEQEELEKEREKLSQLLNSDRRLKTLIKKEILADAEKYGD 475

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E + A   +  +     E +TVV+S +GW+R  K H VD   L +K G
Sbjct: 476 E-----RRSPLVERAEAKALSETEL-TPAEAVTVVLSAKGWVRCAKGHDVDGEKLSYKSG 529

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ L T G++Y+  A +L S R  GE +    ++   + +  A + 
Sbjct: 530 DSFQAAAQGKSNLPVVFLDTSGRSYSCEAHSLPSARSQGEPLTGRFNMVAGEMVQHALMA 589

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVG 665
                 L+ S  G  F+ +  ++++  + GK  L + +  K+   V+V       V VV 
Sbjct: 590 RDEQYYLLSSDAGYGFVCQFKDLVSRNKNGKAILTLPTGAKVMPPVEVKDTAQAQVIVVS 649

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAGRSY 719
              ++L+F I  +P++++GKG ++ S               +     E    + +  R  
Sbjct: 650 NEGRMLVFPIADLPQLAKGKGNKMISIPTLRAQSREEYVVAVSVASPESTVTLHAGRRKL 709

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                DL  + G+RG  G+ +P+G  R  + 
Sbjct: 710 TLKPADLAHYHGERGRRGNKLPRGLQRVDRI 740


>gi|330865875|gb|EGH00584.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 751

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 265/758 (34%), Positives = 437/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +PSHN +E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPSHNRREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D   
Sbjct: 476 AETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDAIG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIAQGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 709 HAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|196232353|ref|ZP_03131207.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428]
 gi|196223721|gb|EDY18237.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428]
          Length = 859

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 224/803 (27%), Positives = 377/803 (46%), Gaps = 69/803 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N    E V+ +++   + + +L Y++S I  RA+PD RDG KP  RRI+  M+++G
Sbjct: 1   MPNQNP--NEKVQPMNVAEEMSKSFLDYSMSVIISRALPDARDGLKPSQRRILVTMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +       K A+IVG+ +G  HPHGDQ++Y +LV +AQP+  R  L+ GQGNFG+++GD 
Sbjct: 59  VLPNRKHIKCAKIVGDTMGNYHPHGDQAIYPTLVHMAQPWAMRDMLVDGQGNFGSVEGDP 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            A+ RYTEAR+  +   ++  +D++ VDF  TY+E   EPVV P+ FPNLL NG +GIAV
Sbjct: 119 PASMRYTEARLRWLGASLMDDMDKETVDFVPTYDERLMEPVVLPAAFPNLLVNGGTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E      A IDNP I++++L++Y+ GPDFPTG I+      I   +  
Sbjct: 179 GMATNIPPHNLSECINGICAQIDNPNITLDELMQYVKGPDFPTGCILQ-GSAGIRSYFET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  RVR R   EE   G   I+VTEIPY V ++ L+++IAEL   K +  + D+RDES
Sbjct: 238 GRGSVRVRGRASFEEAKGGREQIIVTEIPYNVNRAELVKRIAELANEKVLTGISDVRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            E+ R+V     R  +P +++ ++F  + +E+ F +NM  +     P+++ L   +  ++
Sbjct: 298 DENTRVV-IDLKRDGNPKVILNNLFKHTALESSFSVNMLAIDH-GRPRLLGLKDAIACYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------ 419
            HRRE++ RR+ F + A +   E L+G LIA  N+D+ I IIR+                
Sbjct: 356 EHRREIILRRTRFLLNAAEVEAEKLEGFLIALANLDDFIRIIRDSRDRDDAKAKLMALSW 415

Query: 420 ---------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++  TE QV  IL+LRL  L  LE   IK E D LL   
Sbjct: 416 ARAAVEQLGVLIRSEARVVDGQYKFTEKQVGHILDLRLYQLTGLERESIKDEYDKLLVVI 475

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L    +    I  E+R +++ +        RRT              + +I  E
Sbjct: 476 RDLMDILAKEHRVLTIIKDELRAIQDKYGSE-----RRTEIV---PEQGEIAIEDLIANE 527

Query: 519 PITVVISNRGWIRSLKSHSVDLSALH--------------FKEGDSLKIALHAHTTDRIL 564
            + V +++ G+I+     +                      ++ D ++    A T D ++
Sbjct: 528 GVIVTLTHNGFIKRTAVSAYRAQRRGGKGVIGMTAREGETEEDSDFVEHLFTATTHDYLM 587

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF----------VYDSTC 612
             + +G+ Y      +  G    +  +I  +++L  ++ I               +    
Sbjct: 588 FFTVEGRCYVERVFEIPEGTRTSKGRSIANVLELRQDEKIAATIRIQGQKTEEETWSDKL 647

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            ++  +  G       +E     + G   +++ + +++      TG D + ++      +
Sbjct: 648 HIVFATRSGIVKKSNLNEFKNIRKGGIIAIQIETGDRLIDCKLTTGLDEIVLITHEGMSI 707

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F+  ++ +  R   GV                   E    + +      +        +
Sbjct: 708 RFNEGELRDQGRNTVGVWGIRPDTKDYVVAAALVNKE-AMLLVAGENGIGKRTGFDEYRI 766

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             RGG G +  K   ++G    +
Sbjct: 767 QSRGGKGIITMKTTDKTGSVAGA 789



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 81/254 (31%), Gaps = 8/254 (3%)

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            +         I  V E+          R    +      +     +       V  SN 
Sbjct: 604 PEGTRTSKGRSIANVLELRQDEKIAATIRIQGQKTEEETWSDKLHIVFATRSGIVKKSNL 663

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
              ++++     + A+  + GD L         D I+L++ +G +     G L     + 
Sbjct: 664 NEFKNIRKG--GIIAIQIETGDRLIDCKLTTGLDEIVLITHEGMSIRFNEGELRDQGRNT 721

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             +  +   +    +V A + +    LLV    G        E    +R GK  + + + 
Sbjct: 722 VGVWGIRP-DTKDYVVAAALVNKEAMLLVAGENGIGKRTGFDEYRIQSRGGKGIITMKTT 780

Query: 648 EKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +K   V      V  D + ++    K++   + +I E  R  +GV+L   ++  I   I 
Sbjct: 781 DKTGSVAGALTVVETDELMLITNKGKMVRTRVAEIRETGRNAQGVKLIDLRENEILQGIA 840

Query: 703 FKICEGLTWIDSAG 716
             +           
Sbjct: 841 PVVSNEDEEKAEGE 854


>gi|117919184|ref|YP_868376.1| DNA topoisomerase IV subunit A [Shewanella sp. ANA-3]
 gi|117611516|gb|ABK46970.1| DNA topoisomerase IV subunit A [Shewanella sp. ANA-3]
          Length = 758

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 261/757 (34%), Positives = 436/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPAADIAKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + V      +  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYSV-----DAGEIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKELLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RF+
Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL+S ++    I  E+ + 
Sbjct: 416 LTDRQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLEQLLSSDRRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   +   T Q+     EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 GETYGD-----DRRSPIVERHESRALTEQEL-TPSEPVTVVLSEKGWVRCAKGHDIDAES 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   + +L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--- 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K      +  +   
Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLPPRPIDRNREM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++             +   +     +    + 
Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|332304966|ref|YP_004432817.1| DNA topoisomerase IV, A subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172295|gb|AEE21549.1| DNA topoisomerase IV, A subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 770

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 258/755 (34%), Positives = 431/755 (57%), Gaps = 23/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S    + ++ ++ + +R   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSQEIIINKDGIEQLPMRQFTEESYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSNNAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ +E++L  + +  VD++  ++    EP + P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTESRLSKFSEVLLTELGQGTVDWQPNFDGTLDEPKILPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DN +  + +LL ++ GPD+PT   I+  +  I + Y 
Sbjct: 181 VGMATDIPPHNVREVANACAHLLDNSKAELHELLAFVQGPDYPTDAEIITPKSDIRKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +        +  I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYY-----EEAGDIIITALPHQASGGKILEQIAAQMQAKKLPMVSDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+++ P++  +D + LM+ +F  +D+E  + +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPTRLLITPRSNRVDVEQLMQHLFATTDLEKNYRVNINMIGLDGRPQVKDLRMILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R++ + RR  FR+  +  R+ IL+GL+IA+LNIDE+I IIR E+KPK V++  FS
Sbjct: 356 EWLVFRKDTVVRRLQFRLDKVLARLHILEGLMIAFLNIDEVIRIIRYEEKPKQVLMDTFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK E D L  E++++  +L S ++    I  EI   
Sbjct: 416 LSDIQAEAILELKLRHLAKLEEMKIKGEQDALAKERDELQLILGSDRRLKTLIKKEILAA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E S +   T ++ +   EP+TVV+S +GW R  K H VD+  
Sbjct: 476 AELYGD-----DRRSPIIERSESKALTEKELI-PSEPVTVVLSEKGWARCAKGHDVDVVG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +  + + + T G+A++  A  L S R  GE I     +   + +
Sbjct: 530 LSYKAGDKYLASSKGRSNQQAVFMDTSGRAFSCDAHVLPSARSQGEPITGRFSIVSGETV 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               +     + L+ S  G  F+ + +++I+  R GK +L +    K+     V     D
Sbjct: 590 EHVVMGQDEQQYLIASDAGYGFVGKFADMISKNRAGKAYLSLPKSAKVISPQPVHDLSSD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
               +    ++L+F +  +P + +GKG ++ S              V+          + 
Sbjct: 650 WCLAISNEGRMLMFPLRDLPSLGKGKGNKIISIPSAKSQAREEFVKVLAVVPQGANVKVL 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           +  R    + +DL  + G+RG  G+ +P+G  R  
Sbjct: 710 AGKRGMTLTADDLTHYQGERGRRGNKLPRGLQRVD 744


>gi|148557457|ref|YP_001265039.1| DNA gyrase subunit A [Sphingomonas wittichii RW1]
 gi|148502647|gb|ABQ70901.1| DNA gyrase subunit A [Sphingomonas wittichii RW1]
          Length = 936

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 239/824 (29%), Positives = 361/824 (43%), Gaps = 79/824 (9%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S    +   ++  +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++A  E G 
Sbjct: 22  SVPPPIENSDISPISIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYACQEGGF 81

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             G  ++KSA+IVG+V+G  HPHGD S+YD+L RLAQ +  R PLI GQGNFG++D D  
Sbjct: 82  VPGRPYRKSAKIVGDVMGNYHPHGDSSIYDALARLAQDWAMRVPLIDGQGNFGSMDPDPP 141

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           A+ RYTEAR+ +VA  +L  +D+D V+F   Y+    EP V P++FPN+L NG  GIAVG
Sbjct: 142 ASMRYTEARLAKVAMTLLDDLDKDTVNFTPNYDGSRDEPQVLPARFPNILVNGAGGIAVG 201

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+  A  A +DNP ISI++L+  + GPDFPTG  ++  +    ++Y  G
Sbjct: 202 MATNIPPHNLGEVIAACKAYVDNPAISIDELMAIVPGPDFPTGA-LILGQSGARQAYHTG 260

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +R+R  VEE       IV+TEIPYQV KS L+EKIAE    KRI  + DIRDES 
Sbjct: 261 RGSIIMRSRHEVEESRGDRRSIVLTEIPYQVGKSGLVEKIAEAAKDKRIEGISDIRDESN 320

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++    R   PD+++  ++  +  +T FP    +   G  P+ + L  I++ ++ 
Sbjct: 321 RQGVRIVMDLKRDATPDVVLNQLWRHTPAQTSFPA-NMLAIRGGRPETLNLRDIVESFVK 379

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------- 417
            R EV+ RRS F +     R  IL GL+IA  N+DE++ IIR    P             
Sbjct: 380 FREEVITRRSKFELNKARERAHILLGLVIAVTNLDEVVRIIRRSASPAEARAALISREWP 439

Query: 418 -------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E QV AIL+LRL  L  L   +I  EL  L    
Sbjct: 440 RGEIESYIKLVEAVDTIGDAPTYQLSEVQVRAILDLRLHRLTALGRDEIGDELAKLAESI 499

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L +  + +  +  E   +   F+                          +    
Sbjct: 500 AELLEILGNRVRLYQVMVEEFDAILVEFATPRRTEIAPAGDDIDDEDLIEREDMVVTVTH 559

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              +  +     R+ +      S +  K+ D++       T   +L  S  GK Y     
Sbjct: 560 GGYIKRTPLEAFRAQRRGGKGRSGMATKDEDAVTELFVTSTHTPVLFFSNHGKVYRKKVW 619

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L     +  G  +  L+ L   + I T               ++  ++ GN        
Sbjct: 620 RLPEGAPQARGRPMINLLPLADGEKITTVLPLPEDEESWSTLHVVFATAHGNVRRNSMDA 679

Query: 631 IIANTRKGKTFLKVSSE--EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRG-K 685
                  GK  ++   +  +++  V  +T  D V +     K + F+   + E  SR   
Sbjct: 680 FANVPTNGKFAMRFDEDATDRLIGVALLTEQDDVLLATRGGKAIRFASTDVREFQSRTST 739

Query: 686 GVRLQSYKDGGISDVICFK------------------------------------ICEGL 709
           GVR    K       +                                            
Sbjct: 740 GVRGILLKGDDEVISLSILKGFDASTDERDAYLRAAPWKDNEADPTLSAERMAEFEAAEE 799

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      Y +  +        RGG G        R+G  ++S
Sbjct: 800 FILTVCANGYGKRSSAYEYRRTGRGGQGIGNIDNLERNGPVVAS 843



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVG 665
           +   +L V + G        E     R G+    + + E+   VV       G+ + +V 
Sbjct: 797 AEEFILTVCANGYGKRSSAYEYRRTGRGGQGIGNIDNLERNGPVVASFPAHNGEQLMLVT 856

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGL 709
           +  KL+  S+     + R   GVRL +  D   +      +  +  
Sbjct: 857 DQAKLIRLSVGDTRVIGRNSAGVRLFNVSDNEHVVGAARIEESDDE 902


>gi|66043821|ref|YP_233662.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254528|gb|AAY35624.1| Gram negative topoisomerase IV, subunit A [Pseudomonas syringae pv.
           syringae B728a]
          Length = 751

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 261/757 (34%), Positives = 435/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL+S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGDE-----RRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F I  +P++ +GKG ++       ++        +          + 
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQGATLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 710 AGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|310766340|gb|ADP11290.1| DNA topoisomerase IV subunit A [Erwinia sp. Ejp617]
          Length = 758

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 275/757 (36%), Positives = 451/757 (59%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LSNNAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPSMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+ +AA+ LID+P+ ++++LL+ + GPD+PT   I+  R  I + Y+
Sbjct: 178 VGMATDIPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  EE       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDE
Sbjct: 238 NGRGSVRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAVQMRNKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL 
Sbjct: 293 SNHENPTRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILS 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF 
Sbjct: 353 EWLIFRRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPVLMSRFD 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E+  ++++L S ++    +  E++  
Sbjct: 413 ISEIQAEAILELKLRHLAKLEEMKIRGEQDELEKERAHLEAILASERKMNTLLKKELQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E   A KA  +  +I  EP+T+V+S  GW+RS K H +D + 
Sbjct: 473 SDAYGD-----DRRSPLREREEA-KAIGEHELIPSEPVTIVLSQSGWVRSAKGHDIDPAG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+   A    +   ++ + + G++Y L    L S RG GE +   +       +
Sbjct: 527 LSYKAGDAYLGAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGAVV 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660
               + D T KLL+ S  G  F+   SE+++  R GK  L + S  K+   + +    D 
Sbjct: 587 EQVLMADETQKLLMASDAGYGFVCTFSELVSRNRAGKALLTLPSNAKVMTPLAIQSNDDL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWID 713
           +  +    ++L+F + ++P++S+GKG ++ S         +  ++ ++     E    + 
Sbjct: 647 LLAITAAGRMLMFPVSELPQLSKGKGNKIVSIPSAEAASGEDKLAWLLLLT-PENAITLY 705

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              R       DL  +  +RG  G+L+P+G  R  + 
Sbjct: 706 VGKRKLTLKAADLQKFRAERGRRGTLLPRGLQRIDRV 742


>gi|259907126|ref|YP_002647482.1| DNA topoisomerase IV subunit A [Erwinia pyrifoliae Ep1/96]
 gi|224962748|emb|CAX54203.1| DNA topoisomerase 4 subunit A [Erwinia pyrifoliae Ep1/96]
 gi|283476932|emb|CAY72810.1| topoisomerase IV subunit A [Erwinia pyrifoliae DSM 12163]
          Length = 758

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 275/757 (36%), Positives = 451/757 (59%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LSNNAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPSMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+ +AA+ LID+P+ ++++LL+ + GPD+PT   I+  R  I + Y+
Sbjct: 178 VGMATDIPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  EE       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDE
Sbjct: 238 NGRGSVRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAVQMRNKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL 
Sbjct: 293 SNHENPTRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILS 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF 
Sbjct: 353 EWLIFRRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPVLMSRFD 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E+  ++++L S ++    +  E++  
Sbjct: 413 ISEIQAEAILELKLRHLAKLEEMKIRGEQDELEKERAHLEAILASERKMNTLLKKELQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E   A KA  +  +I  EP+T+V+S  GW+RS K H +D + 
Sbjct: 473 SDAYGD-----DRRSPLREREEA-KAIGEHELIPSEPVTIVLSQSGWVRSAKGHDIDPAG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+   A    +   ++ + + G++Y L    L S RG GE +   +       +
Sbjct: 527 LSYKAGDAYLGAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGAVV 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660
               + D T KLL+ S  G  F+   SE+++  R GK  L + S  K+   + +    D 
Sbjct: 587 EQVLMADETQKLLMASDAGYGFVCTFSELVSRNRAGKALLTLPSNAKVMTPLAIQSNDDL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWID 713
           +  +    ++L+F + ++P++S+GKG ++ S         +  ++ ++     E    + 
Sbjct: 647 LLAITAAGRMLMFPVSELPQLSKGKGNKIVSIPSAEAASGEDKLAWLLLLT-PENAITLY 705

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              R       DL  +  +RG  G+L+P+G  R  + 
Sbjct: 706 VGKRKLTLKAADLQKFRAERGRRGTLLPRGLQRIDRV 742


>gi|227496600|ref|ZP_03926878.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
 gi|226833880|gb|EEH66263.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
          Length = 860

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 233/784 (29%), Positives = 387/784 (49%), Gaps = 47/784 (5%)

Query: 6   ISNSNTLV----EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +S+  T +     + ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MSDETTPISEQTHDRIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G    ++F KS+R+VGEV+G  HPHGD ++YD+L RL Q +  RYPL++GQGNFG  
Sbjct: 61  YDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQWWSLRYPLVAGQGNFGTP 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
                AA RYTE +M  +A  +++ +DE++VDF+D Y+ ++ EP + P++FPNLL NG+ 
Sbjct: 121 GNLGPAAPRYTECKMAPLAMEMVRDIDEESVDFQDNYDGKNQEPTILPARFPNLLVNGSE 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT IP HN++E+       +++P+ S E+    L+E I GPDFPTG  I+  R 
Sbjct: 181 GIAVGMATRIPPHNLREVARGVQWFLEHPDASREELLEALIERIPGPDFPTGATIL-GRR 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++YR GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  
Sbjct: 240 GIEDAYRTGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVGG 298

Query: 298 LEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + DIRDE++    + ++    R     +++ +++  + ++  FP NM  L    VP+ + 
Sbjct: 299 IADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVD-GVPRTLS 357

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           LDG ++ W+ H+ +V+ RRS FR++    R+ IL+G L A   +D +IA+IR        
Sbjct: 358 LDGFVRHWVNHQIDVIVRRSRFRLRKAQERLHILEGYLKALDALDAVIALIRRSQTADEA 417

Query: 417 MVSRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                    + E Q DAIL L+LR L  LE  +I+ E + L A+   +  ++ S ++Q  
Sbjct: 418 RGGLMGLLGVDEVQADAILALQLRRLAALERLKIQQEAEELQAKVADLKDIIASPERQRG 477

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
            ++ E+ E+ E +        RRT              + +I +E + V I+  G+ +  
Sbjct: 478 IVSDELAEIVEKYGDE-----RRTRIVPFDGEMS---MEDLIPEEEVVVTITRSGYAKRT 529

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                         +     +E D +       T   +L  +  G+ Y   A  L  G  
Sbjct: 530 RTDAYRSQHRGGKGVKGAALREDDVVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGGR 589

Query: 586 HGE--AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             +   +  L+     ++I        Y+    L++ + +G       SE  +N   G  
Sbjct: 590 DAKGQHVANLLAFQPGEEIAQVMELKDYEQADFLVLATKRGLVKKTRLSEYDSNRSGGVI 649

Query: 641 FLKVSSE-----EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQS 691
            + +  +     +++     +  G  + +V  + +   F      +    R   GV    
Sbjct: 650 AINLREDADGNPDELVSARLLSEGQDLLLVSRHGQSARFHASDDVLRPTGRATSGVTGMR 709

Query: 692 YKDGGISDVICFKICE--GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           ++DG     +     +             Y +  N        RGG+G  V       G 
Sbjct: 710 FRDGDWLLAMDVVDPQWTDADLFVVTEGGYAKRTNVAEYPTKGRGGLGVKVANLVEERGD 769

Query: 750 FLSS 753
            + +
Sbjct: 770 LVGA 773



 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 7/110 (6%)

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
            T   + +++  G A         +    G  +++   +    D+V A V   + ++L +
Sbjct: 726 WTDADLFVVTEGGYAKRTNVAEYPTKGRGGLGVKVANLVEERGDLVGALVTAPSDEVLCI 785

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVK-----VTGDH 660
              G        E+    R   G TF K    +++  V +     + GD 
Sbjct: 786 MESGKVVRSRVDEVSVTGRNTQGVTFAKPDDGDRIIAVARNTERELDGDD 835


>gi|261342452|ref|ZP_05970310.1| DNA topoisomerase IV, A subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288315089|gb|EFC54027.1| DNA topoisomerase IV, A subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 752

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 440/750 (58%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLGELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+  AA+ LI+ P+ S+++LL+ + GPD+PT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVANAAITLIEQPKTSLDELLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWNKED-----GAVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLTFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++K+ ++L S ++    +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDKLQAILASERKMNTLLKKELQADADAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A +A  +  M   EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREEA-RAMNEHDMQPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   +  + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVAFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  FI   +++++  R GK  + +     +   + +  D   +  +   
Sbjct: 590 DDQKLLMASDAGYGFICTFNDLVSRNRAGKALISLPDNAHVMPPLVIENDSDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P +S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPALSKGKGNKIINIPSAEAAKGEDGLAHLFILPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  GS + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGS-LMRGLQRIDRI 737


>gi|58038562|ref|YP_190526.1| DNA topoisomerase IV subunit A [Gluconobacter oxydans 621H]
 gi|58000976|gb|AAW59870.1| Topoisomerase IV subunit A [Gluconobacter oxydans 621H]
          Length = 736

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 356/733 (48%), Positives = 500/733 (68%), Gaps = 5/733 (0%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            T +  +++   L  AL ERY+AYA+STI  R++PD+RDG KPVHRR+++AM ++ LD  
Sbjct: 2   GTDLAGHIEDTKLAEALSERYIAYAMSTIMSRSLPDVRDGLKPVHRRLLYAMQQLRLDPT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           + FKK AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG+IDGD AAA 
Sbjct: 62  SGFKKCARVVGDVIGKFHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE+R+T+VA+ +L G+ +DAVDFR TY+ ED EP+V P  FPNLLANG +GIAVGMAT
Sbjct: 122 RYTESRLTEVAQALLDGIQDDAVDFRATYDNEDHEPIVLPGTFPNLLANGAAGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIP HN  EIC AA  LI+ P+++I +L++ + GPDFPTGGI+VE R+SI+ SY  GRG 
Sbjct: 182 SIPPHNAAEICRAAKLLIEKPDVTIAELVDLMPGPDFPTGGILVEERDSIIRSYETGRGS 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           FR RARW VE+   G+W I+VTEIPYQVQKSRLIE+IA+L+  +++PLL D+RDES  D+
Sbjct: 242 FRTRARWEVEQGRFGTWVIIVTEIPYQVQKSRLIEQIADLMEQRKLPLLGDVRDESTTDI 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+VL PK + ++P++LME++F  + +E RF LNMNVL   RVP V+ L  +L+ WL H  
Sbjct: 302 RLVLEPKTKGVEPEVLMETLFRNTALENRFSLNMNVLGGDRVPGVLSLKQVLRAWLDHVH 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           EVL RRS+ R+ A+ RR+EIL+G L  YLN+DE+I IIR ED+PK  +++ FSLT+ Q +
Sbjct: 362 EVLVRRSNHRLAAVLRRLEILEGFLAVYLNLDEVIRIIREEDEPKVSLMATFSLTDVQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           A+LN+RLRSLR+LEE +I+ E D L  E++ +++LL S +++W +I  ++    + F  S
Sbjct: 422 AVLNMRLRSLRRLEEMEIRRERDKLADEQKALETLLGSERRRWTRIGKDLDGTIKKFG-S 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
             LG RRT     +           I++EP+TV++S  GWIR++K H +D     FKEGD
Sbjct: 481 GPLGERRTLIA-AAPELIDISAALEIDREPLTVLLSREGWIRAMKGHGLDPQGHRFKEGD 539

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
              +++   +TDR+ L+S+ GKAYT+ A +L  GRG G+  + ++D+     +VT F   
Sbjct: 540 EGWLSVECQSTDRLCLISSSGKAYTIKAADLPRGRGFGQPFRTVVDVPQEDRVVTLFPVS 599

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
              + L+ S+ G   IV E+ ++A  R GK    +   +++   V V G HV  +G+N++
Sbjct: 600 DEGRRLIASAAGRGMIVSEAGLVAEKRTGKQVFNIKDGDEVFACVPVGGTHVLTLGQNKR 659

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
            LIF ++Q+PEM+RG GV  Q   D  + D+    + EGL W         R+  DL   
Sbjct: 660 ALIFPLEQVPEMTRGGGVAFQKLGDSTLRDIRTLTLSEGLLWQ---EGQRVRATADLAPL 716

Query: 730 LGKRGGVGSLVPK 742
            G+RG VG   P+
Sbjct: 717 EGRRGAVGRAAPQ 729


>gi|123443841|ref|YP_001007812.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090802|emb|CAL13684.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 758

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 286/756 (37%), Positives = 446/756 (58%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSD---LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+EI +A LALID P  S+E+LLE++ GPDFPT   I+  R  I + Y+
Sbjct: 178 VGMATDIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 SGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ RF+
Sbjct: 353 EWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQRFA 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI   
Sbjct: 413 ISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEILAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AAAYGD-----DRRSPLTEREEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    +   ++ + + G++Y L    L S RG GE +   + L    +I
Sbjct: 527 LSYKAGDSFRAAACGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGANI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660
               +     KLL+ S  G  F+   ++++A  R GKT + +    K    +++    D 
Sbjct: 587 EHVLMAADDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGPDDM 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD-----GGISDVICFKICEGLTW-IDS 714
           +  +    ++L+F +  +PE+S+GKG ++ S        G    V  F +    +  +  
Sbjct: 647 LLSITAAGRMLMFPVADLPELSKGKGNKIVSIPAADAATGKDRLVWLFVLPPQTSITLHF 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  GS +P+G  R  + 
Sbjct: 707 GKRKLTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|11498076|ref|NP_069301.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304]
 gi|2650163|gb|AAB90772.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304]
          Length = 786

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 254/747 (34%), Positives = 405/747 (54%), Gaps = 38/747 (5%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   L+  Y+ YA+S I  RA+PD+RDG KPV RRI++AM EMGL     ++KSARIVG
Sbjct: 6   DISEELKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLFSNRPYRKSARIVG 65

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD +VYD+LVR+AQ FV RYPL+ GQGNFG+IDGDS AA RYTEAR+T++A
Sbjct: 66  EVLGKYHPHGDSAVYDALVRMAQDFVMRYPLVDGQGNFGSIDGDSPAAMRYTEARLTKIA 125

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L  + ++ VDF   ++    EPVV PSK PNLL NG+SGIAVGMAT++P HN+ E+C
Sbjct: 126 EEMLADIGKNTVDFMPNFDATLKEPVVLPSKIPNLLINGSSGIAVGMATNMPPHNLAEVC 185

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           E  +A I NPEIS+E+L++Y+ GPDFPTGG ++   + I E+Y  GRG   VR +  VE+
Sbjct: 186 EGIIAYIQNPEISVEELMKYVKGPDFPTGG-VIVGVDGIKEAYLTGRGKITVRGKVEVEK 244

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  I++ E+PY V K++L+E IAEL   +    +  IRDES  +   V+       
Sbjct: 245 -----NAIIIREVPYMVNKAKLVESIAELAKDRIDE-IRTIRDESDREGIRVVIELKSGS 298

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +P+ +++ ++  S+++T F +    L     P+++ L  ++  ++ HRRE++ RR+++ +
Sbjct: 299 NPETVIKKLYAYSNLQTTFGIINLALVD-NEPRILNLKELIALFVDHRREIIRRRTTYDL 357

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLR 437
           +    R+ I++GL +   +ID  I +I++   P       +  +SL+E Q DA+L +RL+
Sbjct: 358 EKAQERLHIVEGLKVVVEDIDNAINLIKSSSSPSEAKGKLIETYSLSEKQADAVLQMRLQ 417

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  +E   +  E ++L  +  + +S+L S ++    IA E+RE++E +        RRT
Sbjct: 418 KLTAMEIDALLKEYESLKEKIAEYESILASPEKIDAIIADEVREIREKYGDE-----RRT 472

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGD 549
                           +IE+E   V+I+  G+ + +            V +       GD
Sbjct: 473 EIIGQVDE---ISTTDLIEEEENAVLITAEGYAKRMSLEEFRVQSRGGVGVIGASVSPGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAF- 606
            + +    ++TDR+L+ +  G+A+ + A  +           L   I L + + +V+A  
Sbjct: 530 EIAVFRICNSTDRLLIFTNTGRAFWINAYEIPKMDRTARGTTLKRLIRLENGEKVVSALG 589

Query: 607 VYDSTCKL-LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           V D   K+ +++S  G    V   E     R G       S  +++ V  + GD + +  
Sbjct: 590 VKDFNGKIAVILSPDGYIKKVPLIEFENAKRAGVKA----SAGEIQQVELLEGDSIFIAT 645

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
            N  ++      +PE  R  KGV     +DG    +      EG   +    R Y +  +
Sbjct: 646 ANGNVVRLRETDVPEYGRNAKGVIAVRLRDGDR--IAWMSASEGEYLLMLTERGYGKRCD 703

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                   RG +G +  +   ++GK  
Sbjct: 704 VNEFRFIGRGSMGMIGYRISEKTGKLA 730



 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 6/131 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D I + + +G    L   ++     + + +   + L     I           LL+++ +
Sbjct: 639 DSIFIATANGNVVRLRETDVPEYGRNAKGVI-AVRLRDGDRIAW-MSASEGEYLLMLTER 696

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
           G     + +E     R     +     EK   +  +    G+ V ++ E+   +      
Sbjct: 697 GYGKRCDVNEFRFIGRGSMGMIGYRISEKTGKLAFISACNGEEVFIMSEDGYCIRIDSST 756

Query: 678 IPEMSR-GKGV 687
           IP   R   GV
Sbjct: 757 IPVQGRYSSGV 767


>gi|330971534|gb|EGH71600.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 751

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 261/757 (34%), Positives = 435/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL+S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGDE-----RRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A V    +LL+F I  +P++ +GKG ++       ++        +          + 
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQGATLVLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 710 AGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 746


>gi|294671324|ref|ZP_06736175.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306956|gb|EFE48199.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 848

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 234/834 (28%), Positives = 388/834 (46%), Gaps = 114/834 (13%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTE RM ++A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D PE  I++L+  +  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      I++ EIPYQV K++L+EKI EL+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L     P+++ L  
Sbjct: 300 DLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDE+I +I+           
Sbjct: 359 ILAEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEK 418

Query: 417 ------------------------------------MVSRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLSRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I  +  N++A+      +L   ++    I  E+ E K  F        RR+   
Sbjct: 479 GLDQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+         ++ +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D ++  +  GK + +    L        G  I  +I L   + +        
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    + +G D + +   
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTSGSDDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP--------------EMSRGKGVR-------- 688
             K + F+                  +I                  +  GVR        
Sbjct: 711 LGKAIRFNEYWEKSGNEEAEDADIETEISDDLEDETADNENALPSGK-HGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
                   DG I  +I F        L  + +    Y +           +   
Sbjct: 770 LRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKTKADK 823



 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 5/53 (9%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           + L  +  IV+   +         ++L  ++ G       ++    T+  K  
Sbjct: 773 MRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKTKADKAI 825


>gi|110003911|emb|CAK98251.1| dna gyrase subunit a protein [Spiroplasma citri]
          Length = 821

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 243/759 (32%), Positives = 403/759 (53%), Gaps = 19/759 (2%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            N     +  ++ + +   ++  +L YA+S I  RAIPD+RDG KPVHRRII+AM ++ +
Sbjct: 5   ENDGYDYDGKIRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKM 64

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
            +    KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG++DGD  
Sbjct: 65  TYEKQHKKSARIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPP 124

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEA+M+++A  I++ ++++   F D Y+  + EP   P  FPNLL NG SGIAVG
Sbjct: 125 AAMRYTEAKMSKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVG 184

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +  +A+  NPEI+  +L++ I GPDFPTG +I      ++++Y  G
Sbjct: 185 MATNIPPHNLNEVIDGVIAVTKNPEITTVELMKIIKGPDFPTGALITAG-NGLIKAYETG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
            G   +R++  + E       I+V+EIPYQ+ K++L+E+IAEL+  K I  + D+RDES 
Sbjct: 244 NGAITIRSKIDI-EENNNKRRIIVSEIPYQINKAKLLERIAELVRDKIINGIIDLRDESN 302

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +   V+    R    ++++  ++ L+ ++T F LN+  L     P+VM L  ILK ++ 
Sbjct: 303 MEGVRVVLELKRDAQENVILNKLYKLTPLQTNFSLNILALYK-NQPRVMGLKQILKYFIE 361

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSL 423
           H+ +++ +RS F ++    R+ IL+GL IA  NIDE+IAII+     +     ++++F+L
Sbjct: 362 HQIDIIIKRSQFELKKNRNRLIILEGLKIALDNIDEVIAIIKQSQTTQIASDALINKFNL 421

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
              Q  AIL +RL+ L  LE  +I +E+ ++     +++ ++N+ ++Q + +  E+ E+K
Sbjct: 422 VGEQARAILEMRLQRLTGLEIEKINNEIKDIKVAITELEEIINNSEKQIDIMITELTEIK 481

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           + +         +    E+   +    +   ++  +   V   +    +        +  
Sbjct: 482 KKYGDERRSQIIKEELTEIDPEELIRREDTLIMLTQDGYVKRVSDDTFKLQNRGGKGIIG 541

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           L     DSLK  + A++ D +L+ S  GK Y L A N+ +   H     I  LI ++  +
Sbjct: 542 LA-NIEDSLKKIISANSIDSLLIFSNFGKVYKLRAYNIETYSRHARGLPIINLIAIDKTE 600

Query: 601 DIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            I T    D        L  V+ KG     + SE     + GK  +++   +++  V+  
Sbjct: 601 SIQTIIAVDESISTEDNLFFVTKKGLIKKTKISEFNQIRQTGKVAIELKDNDELVSVIIT 660

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDS 714
            G D V +     K++ F+  +I  M+R   GV+  +  D     +           +  
Sbjct: 661 KGYDDVIIGNNIGKVIRFNEKEIRPMTRQSVGVKGIA-NDATGETIGVSSGRSAKYVLSV 719

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFL 751
               Y +        L  R   G        ++G  KF+
Sbjct: 720 TENGYAKKTIIKDYRLTGRNTKGVKSINLTDKTGYLKFV 758



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 6/181 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                   +       A+  K+ D L   +     D +++ +  GK        +     
Sbjct: 629 KTKISEFNQIRQTGKVAIELKDNDELVSVIITKGYDDVIIGNNIGKVIRFNEKEIRPMTR 688

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
               ++ + +    + I       S   +L V+  G A      +     R  K    ++
Sbjct: 689 QSVGVKGIANDATGETI-GVSSGRSAKYVLSVTENGYAKKTIIKDYRLTGRNTKGVKSIN 747

Query: 646 SEEK---MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
             +K   +K V  V GD   +V  +   ++  S++QIP   R   GV++   +     +V
Sbjct: 748 LTDKTGYLKFVQTVDGDEDILVGTKKGNIIRVSLEQIPLFGRTTSGVKIMRLEQDDKLEV 807

Query: 701 I 701
           I
Sbjct: 808 I 808



 Score = 45.9 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 52/149 (34%), Gaps = 2/149 (1%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
               +I      V+  N   IR +   SV +  +               +   +L ++ +
Sbjct: 663 YDDVIIGNNIGKVIRFNEKEIRPMTRQSVGVKGIANDATGETIGVSSGRSAKYVLSVTEN 722

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G A      +      + + ++ +   +    +      D    +LV + KGN   V   
Sbjct: 723 GYAKKTIIKDYRLTGRNTKGVKSINLTDKTGYLKFVQTVDGDEDILVGTKKGNIIRVSLE 782

Query: 630 E--IIANTRKGKTFLKVSSEEKMKLVVKV 656
           +  +   T  G   +++  ++K++++  +
Sbjct: 783 QIPLFGRTTSGVKIMRLEQDDKLEVIEIL 811


>gi|15639000|ref|NP_218446.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025241|ref|YP_001933013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|4033399|sp|O83051|GYRA_TREPA RecName: Full=DNA gyrase subunit A
 gi|3322255|gb|AAC64998.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017816|gb|ACD70434.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|291059425|gb|ADD72160.1| DNA gyrase, A subunit [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 813

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 230/767 (29%), Positives = 387/767 (50%), Gaps = 29/767 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +   +T     +  +S+   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI++AM E G
Sbjct: 1   MEEISTPEGGVLVPISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAMEEKG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L F    +K A+IVG+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD 
Sbjct: 61  LRFSGPTRKCAKIVGDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AAYRYTEA+M ++AE +++ + ++ V F   +++ D EP V P +FP LLANG+SGIAV
Sbjct: 121 PAAYRYTEAKMARIAESMVEDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T++P HN++EI  A  A I+NP +SI++L + I GPDFPTGG I+  +  I +SY  
Sbjct: 181 GMTTNMPPHNLREIAAAISAYIENPNLSIQELCDCINGPDFPTGG-IIFGKNGIRQSYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG   VRAR+ +E   +G   I+ TE+PYQV  + L+ +I EL  AK I  + ++ DE 
Sbjct: 240 GRGKIVVRARFTIETDSKGRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVNDET 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      ++    +     +++  +F  + +++ F +    L     P+++ L  +++ +
Sbjct: 300 SDRTGLRIVVELKKGTPAQVVLNHLFAKTPLQSSFNVINLALV-EGRPRMLTLKDLVRYF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + HR +V+ RR+ F ++    R+ +++ L+ A   ID+II +IR+       K  +  +F
Sbjct: 359 VEHRVDVVTRRAHFELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRLREQF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
                Q  AI++++++ L  LE   +++EL +L      ++ LL S ++    +  E R+
Sbjct: 419 DFDNVQAQAIVDMQMKRLTGLEVESLRTELKDLTELISSLEELLTSPQKVLGVVKKETRD 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           + ++F        RRT              +  I+KE + ++IS+ G+I+          
Sbjct: 479 IADMFGD-----DRRTDIVSNEIEYLDV--EDFIQKEEMVILISHLGYIKRVPVSAYRNQ 531

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                  S+ +    D +     A T D ++ +++ G+AY L    +           + 
Sbjct: 532 NRGGKGSSSANLAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRANRGSHIK 591

Query: 594 IDLNHNQD-----IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
             L    D     IV+   + +   + + +++G    V     +    +G   LK+S  +
Sbjct: 592 SLLMVATDEEITAIVSLREFSNKSYVFMATARGVVKKVTTDNFVNAKTRGIIALKLSGGD 651

Query: 649 KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
            +   V V   D V ++    K L  S  ++ EM R   GV         +      ++ 
Sbjct: 652 TLVSAVLVQDEDEVMLITRQGKALRMSGREVREMGRNSSGVIGIKLTSEDLV-AGVLRVS 710

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    +      Y +  +     +  RG  G  +     R G  + +
Sbjct: 711 EQRKVLIMTENGYGKRVSFSEFSVHGRGTAGQKIYTQTDRKGAIIGA 757



 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 6/151 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               D ++L++  GKA  +    +     +  +  + I L     +          K+L+
Sbjct: 659 VQDEDEVMLITRQGKALRMSGREVREMGRNS-SGVIGIKLTSEDLVAGVLRVSEQRKVLI 717

Query: 617 VSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLI 672
           ++  G    V  SE   + R     K + +   +  +   + V   D    +    K + 
Sbjct: 718 MTENGYGKRVSFSEFSVHGRGTAGQKIYTQTDRKGAIIGALAVLDTDECMCITGQGKTIR 777

Query: 673 FSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
             +  I  + RG +GVR+   +   +   + 
Sbjct: 778 VDVCAISVLGRGAQGVRVLDIEPSDLVVGLS 808


>gi|298489986|ref|YP_003720163.1| DNA gyrase subunit A ['Nostoc azollae' 0708]
 gi|298231904|gb|ADI63040.1| DNA gyrase, A subunit ['Nostoc azollae' 0708]
          Length = 869

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 240/802 (29%), Positives = 385/802 (48%), Gaps = 76/802 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +E +    LR  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTSQERIIPTDLRQEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI+G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +    +LQ ++ + VDF D ++    EP V PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALTSASLLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI N EI+  +L++Y+ GPDFPTG  I+    +I E+Y  GRG 
Sbjct: 182 NIPPHNLGELIDGLVALIHNLEITNMQLMQYVHGPDFPTGAQIL-GTSAIKEAYTTGRGS 240

Query: 250 FRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I++TE+PYQ  K+ LIEKIAEL+  K+I  + DIRDES
Sbjct: 241 VTMRGVATIETIEQRNRPEREAIIITELPYQTNKAALIEKIAELVNDKKIEGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R   P +++ +++  + +++ F  NM  L     PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALV-NGEPQLLTLKNFLSVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
             R   + RR+ ++++  + R  IL+GLLIA  ++D II  IR+           ++ + 
Sbjct: 360 DFRIATINRRTCYQLRKAEERDHILQGLLIALSHLDAIINRIRSASDAPSAKGELITNYG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E + L  +   +  +L+  ++    I  E+ ++
Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHEELQVQIADLQDILDRRERVLEIIETEVTQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K  F+       RRT     + A+       +I  E + ++++ +G+I+ +  ++     
Sbjct: 480 KTQFATP-----RRTII---THAEGDIDDIDLIANEKVLILLTKQGYIKRMPVNTFEAQS 531

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +    K+ D+++  L     D +L  S  G  Y+L    +   S    G  I  
Sbjct: 532 RATRGKAGAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYSLRTYQIPIGSRTSRGTPIVQ 591

Query: 593 LIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +   + I +    D       L++++  GN               G   + +   ++
Sbjct: 592 MLPIPKEEKITSIVPVDEFTSEEYLVMLTKGGNIKKTALEAFSNIRANGLIAISLEEGDQ 651

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           ++ V +    D + +   +   + F    DQ+  + R  +GV+    K G     +    
Sbjct: 652 LRWVRRAKVEDSIIIGSRHGMAIHFRCTHDQLRPLGRATRGVKSMKLKPGDELVGMDILP 711

Query: 706 CE-----------------------------------------GLTWIDSAGRSYNRSEN 724
                                                      G   +      Y +   
Sbjct: 712 AAILETLDTETEAEIEEETIDIEETTEIEEISETTEAPNSNSTGPWVLVITMGGYGKRVP 771

Query: 725 DLLGWLGKRGGVGSLVPKGFPR 746
                L  R G G    K   R
Sbjct: 772 VGQFRLQNRAGQGLTATKFKNR 793



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS---EEKMKLVVKVTGD-HVAVVGEN 667
           +LV++  G    V   +     R   G T  K  +   ++K+  +  V  D  + +    
Sbjct: 758 VLVITMGGYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDKLATLRIVNSDEEIMMATNR 817

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             ++  +++ I   SR   GVR+Q   +      +     +
Sbjct: 818 GIIIRQTVNAISVQSRSATGVRVQRLDEDDAITGVAIVPPD 858


>gi|91977067|ref|YP_569726.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5]
 gi|91683523|gb|ABE39825.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5]
          Length = 917

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 264/862 (30%), Positives = 402/862 (46%), Gaps = 119/862 (13%)

Query: 1   MGV-DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M   D+          +++ +S+   ++  YL YA+S I  RA+PD RDG KPVHRRI+ 
Sbjct: 1   MSDKDDEKPGEPKAPSDIRPISILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILF 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            M E G ++   ++KSAR VG+VIGK HPHGDQSVYD++VR+AQ F  R PLI GQGNFG
Sbjct: 61  GMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD+ AA RYTE+R+T++A+L+L  +D+D VD++D Y+    EP V P+KFPNLL NG
Sbjct: 121 SVDGDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +A +ALI++P + I+ L+  I GPDFPTGGII+  R  I
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALIEDPALGIDDLINIIPGPDFPTGGIIL-GRAGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y  GRG   +R +  +E V +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + 
Sbjct: 240 RLAYHTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  D   V+    R   PD+++  ++  + ++T F  NM  L     P +M L  
Sbjct: 300 DLRDESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALD-AGRPHLMNLRD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L  ++A R +V+ RR+ + +     R  IL GL IA  NIDE+I +IRN   P     +
Sbjct: 359 LLTLFVAFREQVVTRRTKYLLGKARDRAHILVGLAIAVANIDEMIRVIRNSPDPNTARET 418

Query: 420 RF-----------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                           L+  Q  AIL+LRL+ L  L   +I  E
Sbjct: 419 LMSRDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           LD L  E      +L S  +    +  E+  VK  F+       R+T   E         
Sbjct: 479 LDKLALEIADYLDILRSRARVQTIVKDELIAVKTEFATP-----RKTMIIEQEGE---VE 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I++E + V +S+ G+++          +      S +  +E D +     A T   
Sbjct: 531 DEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTP 590

Query: 563 ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------L 614
           +L  S+ G+ Y      L      G G+A+  ++ L   + I T        +      +
Sbjct: 591 VLFFSSRGQVYKEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDV 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  ++ GN    + S+ +   R G   +K+   E +  V   T  D V +     + + F
Sbjct: 651 MFATTGGNVRRNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRF 710

Query: 674 SIDQIPE-MSRGK-GVRLQSYKDGGISDVICF------------------------KICE 707
            +  +     R   GVR  +   G     +C                          I E
Sbjct: 711 PVPDVRVFTGRTSMGVRGIALASGDKVISLCILRHFEATPAERTTYLKQSGAFRRAAIGE 770

Query: 708 GLTWIDSAG------------------------------------RSYNRSENDLLGWLG 731
                + +                                       Y +  +       
Sbjct: 771 DTDVSEVSEVTAEAESEEAEGLTALSSDRYAEMSASEQFVLTISENGYGKRTSSFEYRTT 830

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            RGG G        R+GK ++S
Sbjct: 831 GRGGKGIGAMSVNNRNGKLVAS 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 10/116 (8%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVTG-DHVAVVG 665
           S   +L +S  G        E     R  KG   + V++   K+     V   D + +V 
Sbjct: 806 SEQFVLTISENGYGKRTSSFEYRTTGRGGKGIGAMSVNNRNGKLVASFPVEDSDQIMLVT 865

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           +N +L+   ++ I    R  +GV    +       V+  +          A     
Sbjct: 866 DNGQLIRCPVEGIRVAGRSTQGV--IVFDTADDEKVVSVEHIPEAE---EAENGNG 916



 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 5/122 (4%)

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
            S + A  + +   +L +S +G      +    +    G+ I  +   N N  +V +F  
Sbjct: 796 SSDRYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIGAMSVNNRNGKLVASFPV 855

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           + + ++++V+  G         I    R   G      + +EK+  V  +     A   E
Sbjct: 856 EDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFDTADDEKVVSVEHIPEAEEA---E 912

Query: 667 NR 668
           N 
Sbjct: 913 NG 914


>gi|37527804|ref|NP_931149.1| DNA topoisomerase IV subunit A [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787240|emb|CAE16321.1| topoisomerase IV subunit A [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 755

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 445/750 (59%), Gaps = 20/750 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEITHDGVERLPLHSFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AEL+L  +    VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLAELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A + L+D P+ S++ L+E++ GPD+PT   I+ S E I + Y+ GRG
Sbjct: 182 TDIPPHNAREVVNALVMLLDKPQSSLDDLMEHVKGPDYPTEAEIITSHEDIRKIYKNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAVWSKEDGN-----VVITALPHQVSGAKVLEQIANQMRAKKLPMVDDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPTVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RRE + +R + R++ + +R+ +L+GLLIA+LNIDE+I IIR+ED+PKPV++SRF L+E 
Sbjct: 357 FRRETVRKRLNHRLEKVLKRLHVLEGLLIAFLNIDEVIHIIRSEDEPKPVLMSRFGLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E   L  E++K+ ++L+S ++    +  EI      +
Sbjct: 417 QTEAILELKLRHLAKLEEVKIRGEQSELAKERDKLQAILSSERKLNTLLKKEIMADAATY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A KA  +  +   EP+T+V+S  GW+RS K H +D + L++K
Sbjct: 477 GDE-----RRSPMRERDEA-KAMSEHDITPSEPVTIVLSEMGWVRSAKGHDIDPAGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + T G++Y+L   +L S RG GE +   + +     +    
Sbjct: 531 AGDSFRGAARGKSNQPVVFIDTTGRSYSLDPRDLPSARGQGEPLTGKLTVPAGATVEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAV 663
           +     + L+VS  G  FI   S+++A  R GK  + +    ++   +++     D +  
Sbjct: 591 MAPDEQQFLMVSDAGYGFICTFSDLVAKNRAGKALITLPENARVMTPLEINNPQDDMLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAGRSYN 720
           +    ++L+F +  +P++S+GKG ++ S     +  +   +     +    +    R   
Sbjct: 651 ITRAGRMLMFPVADLPQLSKGKGNKIISVQSAAENDLLSWLLILPPQSSITLYFGKRKLT 710

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               DL  + G+RG  G+ +P+G  R  + 
Sbjct: 711 LRPEDLQKFRGERGRKGTSLPRGLQRIERV 740


>gi|312958634|ref|ZP_07773154.1| gram negative topoisomerase IV, subunit A [Pseudomonas fluorescens
           WH6]
 gi|311287177|gb|EFQ65738.1| gram negative topoisomerase IV, subunit A [Pseudomonas fluorescens
           WH6]
          Length = 754

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 271/759 (35%), Positives = 439/759 (57%), Gaps = 25/759 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+      + V+  SL    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDILADSLDGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP+V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI--PLLEDIR 302
            G+G  R+RA + VE+       I+VT +P+QV  ++++E+IA L+ AK    P + D+R
Sbjct: 241 TGKGSVRMRAVYHVEDGD-----IIVTALPHQVSGAKVLEQIAALMQAKPSKLPQVADLR 295

Query: 303 DESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES  +   RIV+ P N  +D ++LM+ +F  +D+E+ + +N+N++ +   PQ+  L  +
Sbjct: 296 DESDHENPCRIVIIPTNSRVDHEVLMQHLFASTDLESSYRVNINIIGLDGKPQLKNLRNL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWLA R + + RR  FR+  ++RR+ +L GLLIAYLN+DE+I IIR  + PK  +++R
Sbjct: 356 LVEWLAFRVQTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTAEHPKAELIAR 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q D IL+ RLR L +LEE +++ E D LL E+ K+ +LL S  +    +  E+ 
Sbjct: 416 FELSEIQADYILDTRLRQLARLEEMKLRDEQDALLKEQAKLQALLGSEAKLKKLVRSELI 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           +  E +        RR+   + + A   T  +  +  E ITVV+S +GW+RS K H +D 
Sbjct: 476 KDAETYGD-----DRRSPIVQRAEAKALTETEL-LPNEKITVVLSEKGWVRSAKGHDIDA 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           + L +K GD  K A    +    + + + G++Y++PA  L S RG GE +   +      
Sbjct: 530 TGLSYKAGDGFKTAAAGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGRLTPPPGA 589

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
           +     + D     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V    
Sbjct: 590 NFECVLLPDDDSLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVILPRPVDDRE 649

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTW 711
            + +A V    +LL+F I  +P++ +GKG ++       ++        I          
Sbjct: 650 SNWLASVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDIAVIPEGATLV 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           + +  R+ +   +DL  + G+RG  G+ +P+GF R    
Sbjct: 710 LQAGKRTLSLRPDDLEHYKGERGRRGNKLPRGFQRVDAL 748


>gi|161621455|ref|NP_102478.2| DNA gyrase subunit A [Mesorhizobium loti MAFF303099]
          Length = 931

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 260/860 (30%), Positives = 415/860 (48%), Gaps = 123/860 (14%)

Query: 6   ISNSNTL-----VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +++  T          ++ +S+   ++  YL+YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MTDQKTPRGADGGPTGIEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
             E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+
Sbjct: 61  AHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF++TY+  D+EP V P++FPNLL NG+
Sbjct: 121 IDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E I GPDFPTGGI++  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIY 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +R +  +E+ G     I++TE+PYQV K+ +IEK+AEL+  KRI  + D
Sbjct: 240 SAYSTGRGSIVMRGKVNIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES      V+    R    D+++  ++  + ++T F  NM  L+ G  P+++ L  +
Sbjct: 300 IRDESDRQGYRVVIELKRDAVADVILNQLYRFTPLQTSFGANMVALN-GGKPELLTLTDM 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           LK +++ R EV+ RR+ F ++    R  +L GL IA  NIDE+I +IR    P+      
Sbjct: 359 LKAFVSFREEVITRRTKFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQL 418

Query: 420 ----------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++L+E Q  AIL LRL+ L  L   +I  EL
Sbjct: 419 MERRWPAGDVESLILLIDDPRHRINADGTYNLSEEQARAILELRLQRLTALGRDEIADEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           +++ AE      +L+S  +    +  E+  V++ F        RRT   E++        
Sbjct: 479 NSIGAEIVDYLDILSSRARVQQIVKDELAAVRDEFGTP-----RRT---ELTDGGADMED 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+I+          +      S +  KE D +     A+T   +
Sbjct: 531 EDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPV 590

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G  Y      L   + +  G+A+  ++ L   + I T               ++
Sbjct: 591 LFFSSRGIVYKEKVWRLPIGNPQSRGKALINMLPLEQGERITTIMPLPEDETSWGELDVM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
             +++G     + S+ +   R GK  +K+    +++  V   T  D V +   + + + F
Sbjct: 651 FATTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILGVETCTDNDDVLLTASSGQCIRF 710

Query: 674 SIDQIPE-MSRGK-GVRLQSYKDGGISDVICF---------------------------- 703
           S+  +    SR   GVR  +  +      +                              
Sbjct: 711 SVGDVRVFQSRNSVGVRGITMAETDRIISMSVIENVDASPAERAAYLKRAAAERRLAAGA 770

Query: 704 KICEGLTWID---------------------------SAGRSYNRSENDLLGWLGKRGGV 736
              E    +                                 Y +  +     L  RGG 
Sbjct: 771 NGEEEEIALTNEEIGEEAELSDERYEFLKAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGK 830

Query: 737 GSLVPKGFPRS---GKFLSS 753
           G        ++   G+ +++
Sbjct: 831 GIRATDVS-KTAEIGRLVAT 849



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 74/273 (27%), Gaps = 20/273 (7%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             + G R TT   +   + +  +  ++       V  N+       + +  ++    +EG
Sbjct: 624 PLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSDFVQVNRNGKIAMKLEEEG 683

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV- 607
           D +         D +LL ++ G+      G++   +         I +     I++  V 
Sbjct: 684 DEILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAETDRIISMSVI 743

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK---TFLK---VSSEEKMKL----VVK 655
              D++                    +A    G+     L    +  E ++       +K
Sbjct: 744 ENVDASP----AERAAYLKRAAAERRLAAGANGEEEEIALTNEEIGEEAELSDERYEFLK 799

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD--VICFKICEGLTWI 712
               +V  V E       S        RG KG+R             V  F +      +
Sbjct: 800 AHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGRLVATFPVGNDDQIM 859

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +                 R   G  +     
Sbjct: 860 LVSDGGTVIRVPVNGIRFASRATKGVTIFNTAE 892


>gi|56461053|ref|YP_156334.1| DNA topoisomerase IV subunit A [Idiomarina loihiensis L2TR]
 gi|56180063|gb|AAV82785.1| DNA topoisomerase IV subunit A [Idiomarina loihiensis L2TR]
          Length = 747

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 273/752 (36%), Positives = 436/752 (57%), Gaps = 23/752 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E  +   L    EE YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A 
Sbjct: 1   MTTEVTETRPLSRFTEEAYLNYSMYVIMDRALPNIGDGLKPVQRRIVYAMSELGLSALAK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  R+PL+ GQGN+G+ D   S AA R
Sbjct: 61  YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFTYRHPLVDGQGNWGSPDDPKSFAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIAVGMAT 
Sbjct: 121 YTEARLSKFSEVLLSELGQGTVDWIPNFDGTMKEPQVLPARLPHILLNGVTGIAVGMATD 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +E+  A   L++ P   +E ++E + GPD+PT   I+   E IV+ Y  GRG  
Sbjct: 181 IPPHNAREVANACAMLLEKPGSQLEDIMEVLKGPDYPTDAEIITPSEDIVKLYETGRGSI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           ++RA + VE+       IV+T +P+Q   +R++E+IA  + AK++PL+ D+RDES  +  
Sbjct: 241 KMRACYSVEDGE-----IVITALPHQASGARVLEQIAHQMQAKKLPLVSDLRDESDHENP 295

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + LM  +F  +D+E ++ +N+N+L +   P+V PL GILKEWL  R
Sbjct: 296 TRLVVVPRSNRVDTEQLMNHLFATTDLEKQYRVNLNILGLDGRPKVKPLVGILKEWLEFR 355

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           +  + RR   R+  +  R+ IL+GLLIAYLNIDE+I IIR EDKPK  ++SRF+LT+ Q 
Sbjct: 356 QTTVTRRLQHRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDKPKEELMSRFALTDKQA 415

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE ++  E D L  E+EK+++LL S ++    I  E+    E +  
Sbjct: 416 EAILELKLRHLAKLEEMKLTGEQDELNKEREKLETLLGSDRRLKTLIKKELLADAENYGD 475

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E S A KA  ++ +   E +TVV+S +GW+R+ K H ++   L +K G
Sbjct: 476 E-----RRSPIVERSEA-KALSERDLTPAEAVTVVLSKKGWVRTAKGHDIEGDKLSYKSG 529

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS   +    +   ++ L + GK+++  A  L S R  GE +     L   +++    + 
Sbjct: 530 DSYLASAEGKSNQPVVFLDSSGKSFSCEAHLLPSARSQGEPLTGRFSLVAGENVEHVLMA 589

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665
                LL+ S  G  F+ + S++++  + GK  + + +  K+     V     D V V+ 
Sbjct: 590 KDESHLLLASDAGYGFVCQFSDLVSRNKNGKAIITLPTGAKILPPNNVNDLQHDKVIVIS 649

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAGRSY 719
              ++L+F +  +P++S+GKG +L S               +     +    + +  R  
Sbjct: 650 NEGRMLVFPVADLPQLSKGKGNKLISIPALRAQSREEYVVALATAAPDAAITLIAGKRKL 709

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                DL  + G+RG  G+ +P+G  R    +
Sbjct: 710 TLKPADLEHYYGERGRRGNKLPRGLQRVDGIV 741


>gi|87302143|ref|ZP_01084968.1| DNA gyrase subunit A [Synechococcus sp. WH 5701]
 gi|87283068|gb|EAQ75024.1| DNA gyrase subunit A [Synechococcus sp. WH 5701]
          Length = 866

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 235/798 (29%), Positives = 390/798 (48%), Gaps = 64/798 (8%)

Query: 6   ISNSNTL--VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +++       +  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 1   MADPTGPGESDGRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL     ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D 
Sbjct: 61  LGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDN 120

Query: 124 DSAAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           D  AA RYTE+R+  +  + +L+ ++ + VD+ D ++    EP V P++ P+LL NG+SG
Sbjct: 121 DPPAAMRYTESRLQALTTDSLLEDIEAETVDYIDNFDGSQQEPTVMPARVPHLLLNGSSG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+    LALI +PE+    LL  I GPDFPTGG I+  R  I E+
Sbjct: 181 IAVGMATNIPPHNLTELINGLLALIADPELDDRALLALIPGPDFPTGGQIL-GRRGIRET 239

Query: 243 YRLGRGGFRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           Y  GRG   +R    +E +          +++TE+PYQ  K+ LIE+IAE++  K++  +
Sbjct: 240 YTTGRGSVTMRGVASIETLEIPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLDGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            DIRDES  D   ++    R   P +++ ++F L+ +++ F  +M  L     P ++ L 
Sbjct: 300 SDIRDESDRDGMRIVIELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNS-EPVLLTLR 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--- 415
            +L+ +L  R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR          
Sbjct: 359 RMLQVFLEFRIETIERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDAATARL 418

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            +  R  L+E Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++    I
Sbjct: 419 QLQERHGLSEIQSDAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVLGLI 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK- 534
             E+ +++E +        RRT   ++    +      +I  E   V+++  G+++ +  
Sbjct: 479 EAELIQLRERY-----PSERRTEILDLEGGLEDI---DLIANERSVVLLTENGYLKRMPV 530

Query: 535 -------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
                    +   +    +  +++++ +  +  D +LL S  G  Y +PA  +  G    
Sbjct: 531 SEFEATSRGTRGKAGTRSQGEEAVRLFISCNDHDTLLLFSDRGVVYAVPAYRVPVGSRGA 590

Query: 588 E--AIQLLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           +   +  L+ +   + I   V    +D   +LL+++S G       S        G   +
Sbjct: 591 KGTPVVQLLPIPREEQITSLVAVSAFDDDVQLLMLTSGGYIKRTRLSAFANIRSNGLIAI 650

Query: 643 KVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGIS 698
            +   + ++       GD V +       + F +    +  + R  +GVR  + + G   
Sbjct: 651 SLEDGDALRWARLALPGDSVLIGSLKGMTIHFRLTDGELRPLGRTARGVRAMALRPGDEL 710

Query: 699 DVICFKICE--------------------------GLTWIDSAGRSYNRSENDLLGWLGK 732
             +     E                          G   + ++     +        L +
Sbjct: 711 VSMDVLPAELADQVASSSASENEEEDAPEAGESSDGPWVLVASASGLGKRVPVTQFRLQR 770

Query: 733 RGGVGSLVPKGFPRSGKF 750
           R G+G    K F R G  
Sbjct: 771 RAGLGLRAIK-FRRDGDV 787



 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 6/107 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVS-SEEKMKL-VVKVTGDHVAVVG 665
               +LV S+ G    V  ++     R G     +K     + +    V   G+ + +V 
Sbjct: 745 DGPWVLVASASGLGKRVPVTQFRLQRRAGLGLRAIKFRRDGDVLVGLTVMGPGEELLLVS 804

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKICEGLT 710
           E   ++    D IP+ SR   GVRLQ    G  +S+V+         
Sbjct: 805 ERGVIVRMQADAIPQQSRAATGVRLQKLDSGDRLSEVVLVPPAPDEE 851


>gi|262274993|ref|ZP_06052804.1| topoisomerase IV subunit A [Grimontia hollisae CIP 101886]
 gi|262221556|gb|EEY72870.1| topoisomerase IV subunit A [Grimontia hollisae CIP 101886]
          Length = 759

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 275/750 (36%), Positives = 451/750 (60%), Gaps = 23/750 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   
Sbjct: 2   TDITYDGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ +E++L  + +  VD++  ++    EP   PS+ P++L NG +GIAVGMA
Sbjct: 122 MRYTESRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKALPSRLPHILLNGVTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A +ALID+P + ++ LLE++ GPD+PT   I+  +  + + YR GRG
Sbjct: 182 TDIPPHNAREVANALVALIDSPTLDLDGLLEHVKGPDYPTEAEIITPQVELKKLYRDGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RARW  +        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SIKMRARWHKDNGD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIV+ P++  +D + LM  +F+ +D+E  + +N+N++ +   PQV  L  IL EWL 
Sbjct: 297 NPTRIVIVPRSNRVDCEQLMNHLFVSTDLEKSYRVNLNMIGLDGRPQVKGLLKILTEWLE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RRE + RR  +R+  +  R+ IL+GLL+AYLNIDE+I IIR ED+PK  ++SRF L+E 
Sbjct: 357 FRRETVRRRLQYRLDKVLARLHILEGLLVAYLNIDEVIEIIRTEDEPKKELMSRFGLSEK 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL ++LR L KLEE +I+ E D L  E+E+++ +L S ++    +  EI    E +
Sbjct: 417 QAEAILEIKLRQLAKLEEIKIRGEQDELNKEREQLEKVLGSERRMNTLLKKEILADAEKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E + A KA  ++ +I  EPITVV+S +GWIR  K H VD ++L +K
Sbjct: 477 GDE-----RRSPLVERAEA-KAMTERDLIPSEPITVVLSEKGWIRHAKGHDVDPTSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS   +    +   ++ + +DG++Y L +  L S R  GE I   +++     +    
Sbjct: 531 SGDSYLASARGKSNQPVVFIGSDGRSYALESHTLPSARSQGEPITGRLNITAGTAVRHVM 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGDHVAV 663
           + ++   +L+ S  G  F+ ++ ++++  R GK  L +    ++     V  +  D +  
Sbjct: 591 MGENDNLVLMASDAGYGFVCKQDDLLSKNRSGKALLSLPQAAEVMPPQRVADIETDDIVA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGR 717
           +    ++L+F + ++P++ +GKG ++ +      K         F I +G +  + +  R
Sbjct: 651 ITNEGRMLVFPVKELPQLGKGKGNKIINIPSARAKAREELLTQLFVIPQGASVTLHAGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
             +    D+  + G+RG  GS++P+G  R 
Sbjct: 711 KLSLKPTDIDNFRGERGRRGSMLPRGLQRV 740


>gi|237807238|ref|YP_002891678.1| DNA topoisomerase IV subunit A [Tolumonas auensis DSM 9187]
 gi|237499499|gb|ACQ92092.1| DNA topoisomerase IV, A subunit [Tolumonas auensis DSM 9187]
          Length = 759

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 271/758 (35%), Positives = 445/758 (58%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  E V+   LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDA-ELSLEGVERQPLRTFTEQAYLNYSMYVIMDRALPHIADGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 60  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +EL+L  +++  V+++  ++    EP + P++ P++L NG +GIA
Sbjct: 120 SFAAMRYTEARLSRFSELLLSELEQGTVEWQPNFDGTMQEPQILPARLPHILLNGITGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+ +A + L++ P+ +I  LLE++ GPD+PT   I+  R  I + Y 
Sbjct: 180 VGMATDIPPHNVREVAQACITLLERPDATISDLLEHVQGPDYPTKAEIITPRSEIRKIYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA + +E+       IV+T +P+Q   +++IE+IA  + AK++P++ D+RDE
Sbjct: 240 SGKGSIKARAVYHMEDGD-----IVITALPHQASGAKIIEQIANQMQAKKLPMVSDLRDE 294

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM+ +F  +D+E  + +N+N+L M   PQV  L  IL 
Sbjct: 295 SDHENPTRLVIIPRSNRIDVEQLMQHLFASTDLEKSYRVNLNMLGMDHRPQVKNLLTILT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA RRE + RR  FR+  +  R+ IL GLLIAYLNIDE+IAIIRNED+PK  ++ RF 
Sbjct: 355 EWLAFRRETVRRRLQFRLDKVLNRLHILDGLLIAYLNIDEVIAIIRNEDEPKKELMRRFG 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL+L+LR L KLEE++I+ E D L  E++++++LL S ++  N +  EI+  
Sbjct: 415 LSEIQADAILDLKLRHLAKLEEFKIRGEQDELAKERDQLEALLGSARKLGNLLKKEIQAD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   A + T ++     E +TVV+S  GW+R+ K H VD+  
Sbjct: 475 AEKYGD-----DRRSPLVERQEAKQLTEKEL-TPSELVTVVVSEMGWVRAAKGHDVDVQG 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD   ++    +  + + ++  G+ Y+L A  L S RG GE +   +     +  
Sbjct: 529 LNYKAGDGYLVSAQGRSNQQTVFMTNLGRTYSLEAHTLPSARGQGEPLTGKLSFTAGEQT 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + +   + L+ S  G  F+ E +++I+  + GK  L +    ++            
Sbjct: 589 RYVLLGNEDERYLICSDAGYGFLCEYNDLISKNKNGKALLTLPEGAQVLPPQLTAKQDDD 648

Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWI 712
               V+    ++L+F ++ +P++ +GKG +L       ++        +     +    +
Sbjct: 649 ALCLVISNEGRMLLFPLNTLPQLGKGKGNKLIGIPADKVASREEFVTHVAVVKADQAVTL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R       D++ + G+RG  G+ +P+G  R  + 
Sbjct: 709 YAGKRKLTLKPADMVLYHGERGRRGAKLPRGLQRVDRV 746


>gi|94497965|ref|ZP_01304529.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58]
 gi|94422548|gb|EAT07585.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58]
          Length = 896

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 243/835 (29%), Positives = 384/835 (45%), Gaps = 97/835 (11%)

Query: 6   ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +++   L +  ++  +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ +  E 
Sbjct: 1   MTDETVLADPSDISPISIVDEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSAQES 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G  +   ++KSAR+VGEV+GK HPHGD S+YD+L R+ Q +  R PLI GQGNFG++D D
Sbjct: 61  GFVYNRPYRKSARLVGEVMGKYHPHGDSSIYDALARMTQDWSMRVPLIDGQGNFGSMDPD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+ +VA  +L  +D+D VDF+  Y+  ++EP V P++FPNLL NG  GIA
Sbjct: 121 PPAAMRYTEARLAKVATALLDDLDKDTVDFQPNYDASENEPQVLPARFPNLLVNGAGGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+  A LA IDNP IS ++L++ + GPDFPT   ++  +     +Y 
Sbjct: 181 VGMATNIPPHNLGEVLRACLAYIDNPGISTDELIQIVPGPDFPTAP-LILGQSGARSAYN 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RAR  VEE       IV+T IPYQV KS L+EKIAE    KR+  + DIRDE
Sbjct: 240 TGRGSIIMRARHDVEEGRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRVEGISDIRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R   P++++  ++  +  ++ FP    +   G  P+++ L  I++ +
Sbjct: 300 SNREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPA-NMLAIRGGRPEILGLRDIIEAF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           +  R EV+ RR+ + +     R  IL GL++A  N+DE++ IIR    P           
Sbjct: 359 IKFREEVITRRTKYELNKARDRAHILLGLVVAVTNLDEVVKIIRGSASPAEARETLLAKE 418

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                              +    + L++ QV AIL+LRL  L  L   +I  EL  L  
Sbjct: 419 WPIGEIAPYLRLVEAIENDIDGDSYRLSDIQVRAILDLRLHRLTALGRDEIGKELAELAE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              +  ++L    + +  +  E+  ++  F+             E++ A      + +IE
Sbjct: 479 AITEYLAILADRVKLYAVMREELEAIEREFATPR--------LSEITAAADGIEDEDLIE 530

Query: 517 KEPITVVISNRGWIRSLKSHS--------VDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V ++ +G+I+     +           S +  K+ D++       T   +L  ST
Sbjct: 531 REDMVVTVTMQGYIKRTPLDTFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFST 590

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            GK Y L    L        G  +  L+ L   + I T               ++  ++ 
Sbjct: 591 AGKVYRLKVWRLPEGGPATRGRPMVNLLPLGPGETISTVLPLPEDEEEWGKLHVMFATAM 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           G+               GK  +K      ++++  V  +   D V +     K + F  +
Sbjct: 651 GSVRRNSMDAFANVPSNGKIAMKFEGEDEDDRLIGVALLDESDDVLLATRQGKAIRFQAE 710

Query: 677 QIPE-MSR-GKGVRLQSYKDGGISDVICFKICEGLT------------------------ 710
            + E  SR   GVR     DG     +      G                          
Sbjct: 711 DVREFQSRNSTGVRGMKLADGDAVISLSVLHRSGADGEQREEYLRFAPWKPEKDGEMQDQ 770

Query: 711 ------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                        +      Y +  +        RGG G        R+G  ++S
Sbjct: 771 AMFARMQENEQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRNGPVVAS 825



 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVV 664
           ++   +L V + G   +    E     R G+    + +       +        D + +V
Sbjct: 778 ENEQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRNGPVVASFPATRADQLMLV 837

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGL 709
            +  KL+   +D +  + R   GVRL +  D   +      +  E  
Sbjct: 838 TDQAKLIRMGLDSLRVIGRNSAGVRLFNVADNEHVVSAAKIEESEAE 884


>gi|114046267|ref|YP_736817.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-7]
 gi|113887709|gb|ABI41760.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-7]
          Length = 758

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 262/757 (34%), Positives = 435/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     +  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSLKARAVYSVE-----AGEIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKELLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RF+
Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL+S ++    I  E+ + 
Sbjct: 416 LTDRQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLEQLLSSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   +   T Q+     EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 GETYGD-----DRRSPIVERHESRALTEQEL-TPSEPVTVVLSEKGWVRCAKGHDIDAES 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   + +L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
               + +     L+ +  G  FI   +++++  + GK  L +    K      +      
Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTYNDMVSRNKAGKALLSLPPNAKSLPPRLIDRSREM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++             +   +     +    + 
Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTPVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|296104673|ref|YP_003614819.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059132|gb|ADF63870.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 752

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 444/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAEVLLGELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ S+++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTSLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLTFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPVLMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E + L  E++++ ++L S ++    +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQNELEKERDQLQAILASERKMNTLLKKELQADADAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M   EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREEA-KAMNEHDMQPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   +  + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVAFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMEA 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  FI   +++++  R GK  + +     +   + V    D +  +   
Sbjct: 590 DDQKLLLASDAGYGFICTFNDLVSRNRAGKAMISLPDNAHVMPPLVVENESDMLLAITSA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +PE+S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPELSKGKGNKIINIPSAEAAKGEDGLAHLFILPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  GS + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGS-LMRGLQRIDRV 737


>gi|159184789|ref|NP_354513.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
 gi|159140077|gb|AAK87298.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
          Length = 906

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 234/831 (28%), Positives = 389/831 (46%), Gaps = 113/831 (13%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+GK
Sbjct: 1   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+ ++YD+L R+AQ +  R PLI GQGNFG+IDGD  AA RYTE R+ + A  +L 
Sbjct: 61  FHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAHSLLD 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +  +A
Sbjct: 121 DLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCVA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP I + ++++ I GPDFPTG  ++  R  I  +Y  GRG   +R    +E +    
Sbjct: 181 LIENPAIELPEMMQIIPGPDFPTGA-LIMGRSGIRSAYETGRGSVIMRGVATIEPMRGDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TE+PYQV K+ +IEK+AEL+  KRI  + D+RDES      V+    R  + +++
Sbjct: 240 EQIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYRVVIELKRDANAEVI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L+ G  P+ M L  +L+ +++ R +V+ RR+ + ++    
Sbjct: 300 LNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLRKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDK-----------------------------PKPV 416
           R  +L GL I+  NIDE+I +IR+                                 +  
Sbjct: 359 RAHVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPAQDVESLIRLIDDPRHRIN 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               ++L+E Q  AIL LRL  L  L   +I  EL+ + AE  +   +L+S  +    + 
Sbjct: 419 EDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQQIVK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +++ F        RR+   E          + +I +E + V +S+ G+I+     
Sbjct: 479 DELVSIRDEFGTP-----RRSQIVE---GGPDMDDEDLIAREDMVVTVSHLGYIKRVPLT 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
                +      S +  ++ D +     A+T   +L  S+ G  Y      L   + +  
Sbjct: 531 TYRAQRRGGKGRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSK 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKT 640
           G+A+  ++ L   + I T               ++  +++G     +  + +   R GK 
Sbjct: 591 GKALINMLPLEPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKI 650

Query: 641 FLKVS-SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGG 696
            +K+    +++  V   T  D V +     + + F +D +     R   GVR  +  +G 
Sbjct: 651 AMKLDEEGDEILSVETCTDRDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMAEGD 710

Query: 697 ISDVICFK---------------------------------------------------- 704
               +                                                       
Sbjct: 711 RIISMTIVGHVEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVTEEGELSEERYQEL 770

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG--FPRSGKFLSS 753
                  +  + + + +  +        RGG G            G+ +++
Sbjct: 771 KAREEFVLTVSVKGFGKRSSSYDFRTSGRGGKGIRATDTAKTNEIGELVAA 821



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        +   + R GK        K +   ++     V  GD + +V
Sbjct: 774 EEFVLTVSVKGFGKRSSSYDFRTSGRGGKGIRATDTAKTNEIGELVAAFPVEEGDQIMLV 833

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDVICFKICEGLTWIDSAGRS 718
            +  +L+   ++ I   SR  KGV + S  KD  +  V      EG    D A   
Sbjct: 834 SDGGQLIRVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEGD---DEAENG 886


>gi|149911239|ref|ZP_01899862.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36]
 gi|149805693|gb|EDM65692.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36]
          Length = 960

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 253/759 (33%), Positives = 386/759 (50%), Gaps = 64/759 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN  T     +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+ 
Sbjct: 1   MSNLAT----GITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELK 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLDKETVDFVPNYDGTEFIPEVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A LALI NP++S+E+++EYI GPDFPT G I+  +  I ++YR 
Sbjct: 177 GMATNIPPHNLNEVINACLALIQNPDLSLEEIMEYIPGPDFPTYG-IINGKAGIEQAYRT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RAR  +E   RG   IVV E+PYQV K+RLIE+IAE +  K+I  +  +RDES
Sbjct: 236 GRGKVHIRARAYIETNDRGRETIVVHELPYQVNKARLIERIAEFVKDKKIEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + M+  F +NM  L   + P++  L  +L  +L
Sbjct: 296 DKDGMRMVVEVKRDAVGEVVLNNLYAQTQMQVVFGINMVALID-KQPKIFTLKEMLDAFL 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L IA  NIDEIIA+I+                 
Sbjct: 355 RHRREVVTRRTVFELRKARERAHILESLAIALANIDEIIALIKQSATSAEAKQALISRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +    + LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 QLGDVATMLERAGDDAARPEWLEAEYGIREGSYFLTEIQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           SE   LL    ++  +LN+  +    I  E++  K+ F          ++          
Sbjct: 475 SEYKELLDVIAELLYILNTPSRLLEVITEELQASKDAFGDERRTEISASSADINLEDLIE 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D IL  S+
Sbjct: 535 REDVVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIERLLVANTHDHILCFSS 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y +    L   S +  G+ I  L+ L   + I        ++    + + ++ G  
Sbjct: 595 RGRLYWMKVYQLPLASRQARGKPIVNLLPLQDGERITAILPVAQFEDDKFVFMATANGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI-DQIPEM 681
                S        G   + ++ E+++  V    G + + +  +  K++ F   ++IP  
Sbjct: 655 KKTALSAYSKPRAGGIIAVNLNDEDELIGVDITDGTNDIMLFSDEGKVVRFCEFEEIPV- 713

Query: 682 SRGKGVRLQSYKDGG---ISDVICFKICEGLTWIDSAGR 717
                       + G   + +       EG   +D  G 
Sbjct: 714 ----------LDEDGNPVLEEAKPVLDEEGNPVLDEEGN 742



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 9/129 (6%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKM 650
           I L   Q +V+  V  +   +L  +  G        E  A +R  KG   +KVS    K+
Sbjct: 793 IKLEEGQKVVSLIVPKNDGAILTATENGFGKRTALEEYPAKSRGTKGVVSIKVSERNGKV 852

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD----VICFK 704
               +V  GD + ++     L+     ++  + R  +GVRL    +  +      +   +
Sbjct: 853 VGATQVLDGDELMLITNGGTLVRTRASEVSMVGRNTQGVRLIRTGEDELVVGLQRIDEVE 912

Query: 705 ICEGLTWID 713
             E    +D
Sbjct: 913 EDENAVVVD 921



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 11/141 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKM-KLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       ++  A  R  KGK+  K+  E+ + +L+V  T DH+       +L
Sbjct: 539 VVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIERLLVANTHDHILCFSSRGRL 598

Query: 671 LIFSIDQIPEMSR-GKG---VRLQSYKDGGISDVI--CFKICEGLTWIDSAGRSYNRSEN 724
               + Q+P  SR  +G   V L   +DG     I    +  +      +      +   
Sbjct: 599 YWMKVYQLPLASRQARGKPIVNLLPLQDGERITAILPVAQFEDDKFVFMATANGTVKKTA 658

Query: 725 DLLGWLGKRGGVGSLVPKGFP 745
                   R G G +      
Sbjct: 659 LSAYSK-PRAG-GIIAVNLND 677


>gi|51473405|ref|YP_067162.1| DNA gyrase subunit A [Rickettsia typhi str. Wilmington]
 gi|81610819|sp|Q68XG2|GYRA_RICTY RecName: Full=DNA gyrase subunit A
 gi|51459717|gb|AAU03680.1| DNA gyrase [Rickettsia typhi str. Wilmington]
          Length = 905

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 237/826 (28%), Positives = 381/826 (46%), Gaps = 90/826 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
             N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++
Sbjct: 6   SSNLVPVNIEDEMKASYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYR 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD ++YDSLVR+ Q F  R PL+ GQGNFG++DGD+AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSAIYDSLVRMTQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RM++VA  +++ +D+  V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP 
Sbjct: 126 SRMSKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R
Sbjct: 186 HNLGEIIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   + 
Sbjct: 245 GKAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIF 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+ 
Sbjct: 305 IELKKDVVAEVVLNQIYACTQLQTNFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVIT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----------- 422
            R+ + +     R  IL GL IA  NIDEII II+  +                      
Sbjct: 364 NRTIYLLNKARDRAHILLGLAIAISNIDEIIYIIKASNDTNLAKQELMDRQWEVLDILPL 423

Query: 423 -----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                             TE Q  AIL ++L+ L  +E+ +++ +L +L  E  +  ++L
Sbjct: 424 IKLVDDKVMLNERGKLSFTEVQAKAILEMKLQRLTAMEKNKLEQDLKHLATEIAEYLNIL 483

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S  +    +  E+ +VKE F+           F +         +  +       +   
Sbjct: 484 DSRTRLLEILKEELIKVKEEFAVPRLTAIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRV 543

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                RS K      S L  ++ D         T   +L  S  GK Y+L    L     
Sbjct: 544 PLSSYRSQKRGGKGRSGLSMRDEDITMQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNP 603

Query: 586 HGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRK 637
            G+   +  ++ L  N+ I                 ++  ++KGN    +  +       
Sbjct: 604 QGKGRPMVNILPLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRSDLLDFKKIQLN 663

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK---GVRLQSY- 692
           GK  +++  ++K+  V     D H+ +  +  K L F ++ +  + + +   GVR     
Sbjct: 664 GKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRII-KSRISDGVRGMKLA 722

Query: 693 KDGGISDVICFK----------------------------------------------IC 706
           K+  +  +   K                                                
Sbjct: 723 KEDSVISMTVLKGINSTKEDRDAYLTVPWEKRLKIAKGEEFNLEALGVHLNADSILEMAN 782

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +      + +  +     +  RGG G +      ++G  + 
Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 5/109 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVA 662
           + +S   +L V+  G              R G   + +   +K   +  V+ V   D + 
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELM 839

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           ++  + KL+   ++ +    R   GV L    D      +        +
Sbjct: 840 LITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSLIAETSES 888



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/434 (10%), Positives = 120/434 (27%), Gaps = 68/434 (15%)

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
           +   +R+  ++   +          I    +           L E  +       +  L 
Sbjct: 451 EMKLQRLTAMEKNKLEQDLKHLATEIAEYLNILDSRTRLLEILKEELIKVKEEFAVPRLT 510

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            +E  +   ++++L+  +E + ++   G  +   ++    + +    +S    R      
Sbjct: 511 AIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSSYRSQKRGGKGRSGLSMRDEDITM 570

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA--- 557
           +V      T          +  +   +  + + +     +  +   + +     +     
Sbjct: 571 QVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNPQGKGRPMVNILPLQENEHITNIMPLPE 630

Query: 558 ----HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I+  +  G    +   +LL  +      ++ I L+ +  ++          
Sbjct: 631 NQDEWDHLNIMFATAKGN---IRRSDLLDFKKIQLNGKIAIRLDEDDKLIDVKPCKEDEH 687

Query: 614 LLVVSSKGNAFIVEESEI---IANTRKGKTFLKVSSEEKMKLVVKVTG------------ 658
           +L+ +  G A       +    +    G   +K++ E+ +  +  + G            
Sbjct: 688 ILLATKAGKALRFPVESLRIIKSRISDGVRGMKLAKEDSVISMTVLKGINSTKEDRDAYL 747

Query: 659 -------------------------------------DHVAVVGENRKLLIFSIDQIPEM 681
                                                + +  V EN      S       
Sbjct: 748 TVPWEKRLKIAKGEEFNLEALGVHLNADSILEMANSEEFILTVTENGFGKRSSAYGYRIT 807

Query: 682 SRG-KGVRLQSYKD--GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            RG  G+      D  G +  V+  K+ + L  I ++G+            +  R   G 
Sbjct: 808 DRGGSGIINMDINDKTGLVVGVMPVKMDDELMLITNSGK--LIRCKLESVRITGRNTSGV 865

Query: 739 LVPKGFPRSGKFLS 752
           ++ K      K +S
Sbjct: 866 ILFKLDD-DEKVVS 878



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 3/150 (2%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
             +  E     + +     ++  K    +L AL         I   A++ + IL ++ +G
Sbjct: 736 INSTKEDRDAYLTVPWEKRLKIAKGEEFNLEALGVHLNADS-ILEMANSEEFILTVTENG 794

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A         G  I  +   +    +V         +L+++++ G     +   
Sbjct: 795 FGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELMLITNSGKLIRCKLES 854

Query: 631 --IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
             I      G    K+  +EK+  V  +  
Sbjct: 855 VRITGRNTSGVILFKLDDDEKVVSVSLIAE 884


>gi|308175820|ref|YP_003915226.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
 gi|307743283|emb|CBT74255.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
          Length = 875

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 222/787 (28%), Positives = 392/787 (49%), Gaps = 45/787 (5%)

Query: 1   MGVDNISNSNTLVEENVKAV---------SLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  +    +  +  E ++ +          L+  ++  YL YA++ I  RA+PD+RDG K
Sbjct: 1   MSDEQTPENAPMDGEIIEPIHEGGRVDQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+++AM + G     ++ K AR+VGEV+G+ HPHGD ++YD+LVRL Q +V RYPL
Sbjct: 61  PVHRRVLYAMYDGGYRPERSYNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWVMRYPL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
             GQGNFG+   D AAA RYTE +M  +A  +++ ++E+ VDF+D Y+ ++ EP V P++
Sbjct: 121 ALGQGNFGSPGNDGAAAQRYTETKMAPLAMEMVRDINENTVDFQDNYDGKNQEPTVLPAR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP HN++E+ E     + NPE S    + +L+  + GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPPHNLREVAEGVQWYLQNPEASREELLAELMLRVKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           +G +I+   + I ++YR GRG   +RA   VEE+ +G  C+VVTE+PY      L  KIA
Sbjct: 241 SGAMIL-GTKGISDAYRTGRGSITMRAVVNVEEI-QGRTCLVVTELPYMANPDNLAVKIA 298

Query: 288 ELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           EL+   +I  + D+RDE++    + ++    R     +++ +++  +++++ F  NM  +
Sbjct: 299 ELVRDGKISGIADMRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAI 358

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ +PLDG ++ W+ H+ EV+ RR+ +R++  +    IL+GLL A   +DE+IA+
Sbjct: 359 VD-GVPRTLPLDGFIRHWVTHQIEVIVRRTEYRLKKAEEEAHILRGLLKALDALDEVIAL 417

Query: 407 IRNEDKPKPVMVSRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +           + E+Q  AIL+++LR L  LE  +I+     L     +  +
Sbjct: 418 IRRSATTEAARDGLMELLDIDEDQARAILDMQLRRLAALERQKIQDRHAELDRMIAEFKA 477

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           ++    +Q   ++ E++E+            RRT        D +   + +I +E + V 
Sbjct: 478 IIADPARQRQIVSEELQEIVAKHGD-----DRRTKVLMGYDGDMSV--EDLIPEEEMVVT 530

Query: 524 ISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+++  +  +          +   + +  D ++      T + +L  +  G+ Y  
Sbjct: 531 ITRGGYVKRTRIDNYRSQARGGKGIKGANLRGDDVVEHFFVTSTHNWLLFFTNHGRVYRT 590

Query: 576 PAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESE 630
               L       +   +  ++    ++ I        Y     L++ +  G        +
Sbjct: 591 KCYELAEAGRDAKGQHVANVMAFQPDEHIAQVLDLRTYQDAAYLMLATRNGLVKKTRLED 650

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KG 686
              N   G   + +  ++++     V+  D V +V    + + F+     +  M R   G
Sbjct: 651 YDTNRTAGVIAINLREDDELVSAQLVSESDDVMLVSRKGQSVRFTATDTALRPMGRATSG 710

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           V    +++G         + +           Y +        +  RGG+G  V K    
Sbjct: 711 VTGMKFREGDELLAADV-VRDDSYVFTVTNEGYAKRTTVAEYRVQSRGGLGIKVAKLNEE 769

Query: 747 SGKFLSS 753
            G+ + +
Sbjct: 770 RGELVGA 776



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 6/183 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR 584
                    + +  + A++ +E D L  A     +D ++L+S  G++    A +      
Sbjct: 645 KTRLEDYDTNRTAGVIAINLREDDELVSAQLVSESDDVMLVSRKGQSVRFTATDTALRPM 704

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFL 642
           G   +    +      +++ A V      +  V+++G A     +E    +R G      
Sbjct: 705 GRATSGVTGMKFREGDELLAADVVRDDSYVFTVTNEGYAKRTTVAEYRVQSRGGLGIKVA 764

Query: 643 KVSSE-EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           K++ E  ++   + V   D V VV  + K++  ++ Q+P   R   GV            
Sbjct: 765 KLNEERGELVGALIVDETDEVLVVMGSGKVVRSAVSQVPSKGRDTMGVIFAKPDKKDHII 824

Query: 700 VIC 702
            + 
Sbjct: 825 AVA 827


>gi|238796975|ref|ZP_04640479.1| DNA topoisomerase 4 subunit A [Yersinia mollaretii ATCC 43969]
 gi|238719235|gb|EEQ11047.1| DNA topoisomerase 4 subunit A [Yersinia mollaretii ATCC 43969]
          Length = 757

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 280/756 (37%), Positives = 440/756 (58%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LSNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+EI +A +ALID P  S+E+LLE++ GPDFPT   I+  R  I + Y 
Sbjct: 178 VGMATDIPPHNVREIAQAVIALIDKPTTSLEELLEFVQGPDFPTEAEIITPRNEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 NGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLLEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+
Sbjct: 353 EWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFA 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTMIKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RR+   E + A KA     ++  EP+T+V+S  GW+RS K H +D   
Sbjct: 473 AAAYGD-----DRRSPLTERAEA-KAMSDHDIVPSEPVTIVLSEMGWVRSAKGHDIDPGG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G    
Sbjct: 587 EQVLMAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIHGPDDM 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKICEGLTW-IDS 714
           +  +    ++L+F +  +PE+S+GKG ++ S        G       F +    +  +  
Sbjct: 647 LLSITAAGRMLMFPVADLPELSKGKGNKIVSIPGAQAAAGEDRLAWLFVLPPQTSVTLHF 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  GS +P+G  R  + 
Sbjct: 707 GKRKLTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|238762429|ref|ZP_04623400.1| DNA topoisomerase 4 subunit A [Yersinia kristensenii ATCC 33638]
 gi|238699414|gb|EEP92160.1| DNA topoisomerase 4 subunit A [Yersinia kristensenii ATCC 33638]
          Length = 757

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 280/756 (37%), Positives = 443/756 (58%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+EI +A LALID P  S+E+LLE++ GPDFPT   I+  R+ I + Y+
Sbjct: 178 VGMATDIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRDEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 NGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+
Sbjct: 353 EWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFA 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AAAYGD-----DRRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LSYKAGDSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660
               +     KLL+ S  G  F+   ++++A  R GKT + +    K    +++    D 
Sbjct: 587 EQVLMAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGPDDM 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDS 714
           +  +    ++L+F +  +PE+S+GKG ++ S      +        +     +    +  
Sbjct: 647 LLSITAAGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHF 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  GS +P+G  R  + 
Sbjct: 707 GKRKLTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|126666934|ref|ZP_01737910.1| DNA topoisomerase IV subunit A [Marinobacter sp. ELB17]
 gi|126628650|gb|EAZ99271.1| DNA topoisomerase IV subunit A [Marinobacter sp. ELB17]
          Length = 768

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 280/764 (36%), Positives = 448/764 (58%), Gaps = 31/764 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T  +E  + V+LR   E+ YL Y++  I +RA+P++ DG KPV RRII+AMSE+G
Sbjct: 1   MPEFQT-TDEGFERVALRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   
Sbjct: 60  LKSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+ + A+++L  + +   D+   ++    EP + P++ P++L NGT+GIA
Sbjct: 120 SFAAMRYTESRLARFADVLLSELGQGTADWVPNFDGTMDEPSILPARLPHVLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A + L+  P+ ++E+L EYI GPD+PT   I+  R+ +++ Y 
Sbjct: 180 VGMATDIPPHNVREVTAACVHLLSAPDATVEQLCEYIQGPDYPTRAEIITPRKDLLQMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RARW V E G     +V+T++P+QV  +R++E+IA+ + AK++P++ D+RDE
Sbjct: 240 TGRGSLRMRARW-VNEGGD----LVITDLPHQVSGNRVLEQIAQQMQAKKLPMVADLRDE 294

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+NV+     P V  L  +L 
Sbjct: 295 SDHENPTRLVIVPRSNRVDAEGLMAHLFASTDLEKPYRVNINVIGNDGRPGVKGLVQLLT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ +L+GLLIAYLN+DE+I IIR EDKPK  ++ RFS
Sbjct: 355 EWLTFRRATVIRRLQYRLDKVLARLHLLEGLLIAYLNLDEVIEIIRYEDKPKAELMVRFS 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+ +Q +AIL L+LR L KLEE +I+ E D L  E++ + S+L S K+    I  E+++ 
Sbjct: 415 LSADQAEAILELKLRHLAKLEEMKIRGEQDELAIERDHLQSILGSEKKLRQLIKTELQQD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   +   +     +  +P+TVV+S +GW+R+ K H +D   
Sbjct: 475 AETYGD-----DRRSPIVERGESRAFSNIDL-VSNDPVTVVLSEKGWVRAAKGHDIDPLG 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD   +  H     +++ L + G+AY L A +L S RG GE +   I+       
Sbjct: 529 LSYKAGDKFSLQAHGRNNQQVIFLDSTGRAYALMAHSLPSARGQGEPLSGHINPPPGAQF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV------ 656
               + DS  K+++V+  G  F     ++++  R GKT + V     +   V V      
Sbjct: 589 CGLLMGDSQRKVVLVTDGGYGFATSLGDMLSKNRNGKTLVSVPKGAHLMAPVMVPVMAPE 648

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICE 707
                ++A V    ++L+F + ++PE+ +GKG +L S        +D  +  V  F   +
Sbjct: 649 SRETLYLAAVSNEGRMLVFPLTELPELVKGKGNKLISIPSARVQSRDEFVVAVAVFAHSD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            L    +  R  +   +DL  +LG+RG  G  +P+G  R    +
Sbjct: 709 QLEI-HAGKRKMSLQFSDLEHYLGERGRRGHKLPRGLQRVDGIV 751


>gi|254293784|ref|YP_003059807.1| DNA gyrase subunit alpha [Hirschia baltica ATCC 49814]
 gi|254042315|gb|ACT59110.1| DNA gyrase, A subunit [Hirschia baltica ATCC 49814]
          Length = 981

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 262/841 (31%), Positives = 398/841 (47%), Gaps = 122/841 (14%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ V  +++   +++ YL YA+S I  RA+PD+RDG KPVHRRI+ +MSE G  F  A+K
Sbjct: 40  EDGVSPINISDEMKKSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSEQGYTFDKAYK 99

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGDQSVYD+LVR+AQ F    PL+ GQGNFG++DGD AAA RYTE
Sbjct: 100 KSARVVGDVIGKYHPHGDQSVYDALVRMAQNFSMGLPLLDGQGNFGSMDGDPAAAMRYTE 159

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++ +VA  +L  +D+D V+F++ Y+  + EP+V P++FPNLL NG  GIAVGMAT+IP 
Sbjct: 160 VKLKKVANHLLADIDKDTVNFQENYDGSEKEPIVLPARFPNLLVNGGGGIAVGMATNIPP 219

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +A+I++P I  E LLE + GPDFPTG  ++  R         GRG   +R
Sbjct: 220 HNLGEVIDATIAMIEDPNIDDEALLEIVPGPDFPTGA-LIIGRAGSRSGLMTGRGSVIMR 278

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +EE+  G   +V TEIPYQV K+ +IEKIAEL+  KRI  + D+RDES  D   V+
Sbjct: 279 SKSSIEELKNGREALVFTEIPYQVNKASMIEKIAELVRDKRIEGIADMRDESDRDGVRVV 338

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P++++  +F  + ++T F +NM  L+    P+++ L  IL+ ++  R EV+ 
Sbjct: 339 VEVKRDASPEVVLNQLFRYTQLQTSFGMNMLALNS-GRPELLSLKAILQAFIIFREEVVA 397

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----------- 422
           RR+ F +     R  +L GL +A  NIDE+I IIR+   P                    
Sbjct: 398 RRTKFELNKARARAHLLVGLALAVANIDEVIKIIRHSPDPSTAREKLMDRAWPAQDMLSL 457

Query: 423 ------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                             L+E Q  AIL+LRL+ L  L   +I  E   L         +
Sbjct: 458 INLIADRRTVANEVGEIRLSEEQARAILDLRLQRLTGLGRDEIGDEARGLADRIADYLDI 517

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L+S  +    I  E+R V+E F+       RR+ F E   A+     +A IEKE + V+ 
Sbjct: 518 LSSRPRVMEIITEELRVVREEFAIP-----RRSQFIE---AELDMDDEAFIEKEDMVVMF 569

Query: 525 SNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           ++ G+ +                 S +  KE D++     A+T   +L  S+ G  Y   
Sbjct: 570 THGGYAKRTALSIYRTQHRGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVYKTK 629

Query: 577 AGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEE 628
              +   + +  G+A+  L+ L+  + I +               +L  +  G     + 
Sbjct: 630 VWRMPLGTPQSRGKALVNLLPLDKGETITSVMPLPEDEEERANMNILFATRSGGVRRNKL 689

Query: 629 SEIIANTRKGKTFLKVSS------EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE- 680
           S+     R GK  +K+        ++ +  V   +  D V +     + + F ++ +   
Sbjct: 690 SDFTQVNRNGKIAMKLDEAQVAGSDDGIVGVQICSPDDDVMLTTALGQCIRFKVEDVRVF 749

Query: 681 MSRG-KGVRLQSYKDGGISDVICFK-------------------------ICEGLTWIDS 714
             R   GVR     +G     +                              EG T ID 
Sbjct: 750 TGRTSTGVRGIRLANGDEVISMLVLRHMDITSPEARAYLKHASAMRRALGEEEGDTEIDV 809

Query: 715 ---------------------------------AGRSYNRSENDLLGWLGKRGGVGSLVP 741
                                                  +  +     +  RGG G +  
Sbjct: 810 VSEPDADDEGDEAALSPERIAELGAAEEFLLTITEDGMGKRASAYDYRVTGRGGKGLIAH 869

Query: 742 K 742
           K
Sbjct: 870 K 870



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 5/111 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKV-TGDHVAVVGE 666
           +   LL ++  G        +     R GK  +  K+++  ++     +  GD + +V +
Sbjct: 835 AEEFLLTITEDGMGKRASAYDYRVTGRGGKGLIAHKLNAGRRLAAAFPIEDGDEIMLVTD 894

Query: 667 NRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             +L+     QI    R  +GV++     G    V   ++ E  + +D   
Sbjct: 895 AGQLIRTPAKQIRIAGRATQGVKVLR-TSGEERVVSVERLAEQESDVDENE 944



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 51/213 (23%), Gaps = 34/213 (15%)

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D ++L +  G+       ++    G        I L +  ++++  V       
Sbjct: 721 QICSPDDDVMLTTALGQCIRFKVEDVRVFTGRTSTGVRGIRLANGDEVISMLVL------ 774

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK-----VTGDHVAV------ 663
                  +    E    + +    +  L     +    VV        GD  A+      
Sbjct: 775 ----RHMDITSPEARAYLKHASAMRRALGEEEGDTEIDVVSEPDADDEGDEAALSPERIA 830

Query: 664 -----------VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTW 711
                      + E+      S        RG KG+       G       F I +G   
Sbjct: 831 ELGAAEEFLLTITEDGMGKRASAYDYRVTGRGGKGLIAHKLNAGRRL-AAAFPIEDGDEI 889

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +                 +  R   G  V +  
Sbjct: 890 MLVTDAGQLIRTPAKQIRIAGRATQGVKVLRTS 922


>gi|238782862|ref|ZP_04626891.1| DNA topoisomerase 4 subunit A [Yersinia bercovieri ATCC 43970]
 gi|238716285|gb|EEQ08268.1| DNA topoisomerase 4 subunit A [Yersinia bercovieri ATCC 43970]
          Length = 757

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 281/756 (37%), Positives = 441/756 (58%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LSNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+EI +A +ALID P  S+E+LLE++ GPDFPT   I+  R  I + Y 
Sbjct: 178 VGMATDIPPHNVREIAQAVIALIDKPATSLEELLEFVQGPDFPTEAEIITPRNEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 NGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLLEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+
Sbjct: 353 EWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFA 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTMIKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RR+   E + A KA     ++  EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AAAYGD-----DRRSPLTERAEA-KAMSDHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660
               +     KLL+ S  G  F+   ++++A  R GKT + +    K    +++    D 
Sbjct: 587 EQVLMAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGPDDM 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKICEGLTW-IDS 714
           +  +    ++L+F +  +PE+S+GKG ++ S        G       F +    +  +  
Sbjct: 647 LLSITAAGRMLMFPVADLPELSKGKGNKIVSIPSAQAAAGEDRLAWLFVLPPQTSVTLHF 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  GS +P+G  R  + 
Sbjct: 707 GKRKLTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|113477602|ref|YP_723663.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101]
 gi|110168650|gb|ABG53190.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101]
          Length = 885

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 239/788 (30%), Positives = 368/788 (46%), Gaps = 60/788 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  E  +    LR  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTSESRIVPTDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIQGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +  + +L+ +D + VDF D ++    EP+V PS+ P L  NG+SGIAVGMAT
Sbjct: 122 YTECRLQVLTCDAMLRDIDSETVDFADNFDGSQQEPLVLPSRVPQLFLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI N EI+  +L+++I GPDFPTG  I+  +  I ++Y LGRG 
Sbjct: 182 NIPPHNLGELIDGLVALIHNSEITENELIQHIPGPDFPTGAQIL-GKSGIRDAYTLGRGS 240

Query: 250 FRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I+VTE+PYQ  K+ LIEKIAEL+  K+I  + DIRDES
Sbjct: 241 ITMRGVATIETIEQRGRPDKEAIIVTELPYQTNKAALIEKIAELVNDKKIEGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R   P +++ +++  + ++  F  N+  L     PQ++ L   L+ +L
Sbjct: 301 DRNGMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANVLALVNS-EPQLLTLKKYLEVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  N+DEII +IRN              + 
Sbjct: 360 EFRVETITRRTEYELRKAEERDHLLQGLLIALDNLDEIIQLIRNAADTPNAKKELIENYG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E + LL +   +  +L   ++    I  E  E+
Sbjct: 420 LSEVQSDAILQMQLRRLTALEAQKIQKEHEELLLKIADLQDILAKRERILEIIETEAIEI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE  +                    A  +  ++  E   +         +    +   S 
Sbjct: 480 KERHATPRRTVIELAEGELDDTDLIANEKAIILLTEQGYIKRMPVNSFEAQSRATRGKSG 539

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
              KE D ++  L  +  D IL  S  G  Y L A  +   S    G  I  ++ +  ++
Sbjct: 540 TKMKEDDVVEHFLSCYDHDSILFFSQRGVVYCLNAYQIPIGSRVARGVPIVQMLPIPRDE 599

Query: 601 D---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
               IV    +     L++++  G       S        G   + +   + ++ V +  
Sbjct: 600 KVTSIVAVSEFTDDKYLVMLTKGGYIKKTSLSAFANIRSNGLIAISLGEGDSLRWVRRAK 659

Query: 658 -GDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISDVICFKICE------ 707
             D + +       + F  D  Q+  + R  +GV+      G     +            
Sbjct: 660 VDDSLIIGSSYGMAIHFRTDNKQLRPLGRNTRGVKSMKLIKGDELISMDILPSSIVENIA 719

Query: 708 -----------------------------------GLTWIDSAGRSYNRSENDLLGWLGK 732
                                              G   +      Y +        L  
Sbjct: 720 DIDEENLELEEEELEIETDEIEEVESDEFTATNNIGSWVLVITTNGYGKRVPVSQFTLQN 779

Query: 733 RGGVGSLV 740
           RGG G + 
Sbjct: 780 RGGKGRIA 787



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-------TGDHVAVVGE 666
           +LV+++ G    V  S+     R GK  +    ++K K   +V         + + ++  
Sbjct: 758 VLVITTNGYGKRVPVSQFTLQNRGGKGRIATKFKQKKKKQDQVAALRVVNESEELMIITA 817

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
              ++  +ID I   SR   GVR+Q   D      +     
Sbjct: 818 KGIIIRQAIDAISIQSRSATGVRVQKLDDADAIAEVALVPA 858



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 66/227 (29%), Gaps = 61/227 (26%)

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFL 642
            H    + +I+L   +   T  + +    +++++ +G    +  +   A +R  +GK+  
Sbjct: 482 RHATPRRTVIELAEGELDDTDLIANEKA-IILLTEQGYIKRMPVNSFEAQSRATRGKSGT 540

Query: 643 KVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV-RLQSY---KDGG 696
           K+  ++ ++  +     D +    +   +   +  QIP  SR  +GV  +Q     +D  
Sbjct: 541 KMKEDDVVEHFLSCYDHDSILFFSQRGVVYCLNAYQIPIGSRVARGVPIVQMLPIPRDEK 600

Query: 697 ISDVICFKI-CEGLTWIDSAGRSYNRSENDLLG--------------------------- 728
           ++ ++      +    +      Y +  +                               
Sbjct: 601 VTSIVAVSEFTDDKYLVMLTKGGYIKKTSLSAFANIRSNGLIAISLGEGDSLRWVRRAKV 660

Query: 729 -----------------------WLGKRGGVGSLVPKGFPRSGKFLS 752
                                      R   G    K   +  + +S
Sbjct: 661 DDSLIIGSSYGMAIHFRTDNKQLRPLGRNTRGVKSMKLI-KGDELIS 706


>gi|318604202|emb|CBY25700.1| topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 758

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 283/756 (37%), Positives = 445/756 (58%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSD---LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+EI +A LALID P  S+E+LLE++ GPDFPT   I+  R  I + Y+
Sbjct: 178 VGMATDIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 SGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ RF+
Sbjct: 353 EWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQRFA 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AAAYGD-----DRRSPLTEREEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    +   ++ + + G++Y L    L S RG GE +   + L    +I
Sbjct: 527 LSYKAGDSFRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGANI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G    
Sbjct: 587 EHVLMAADDQKLLMASDVGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGSDDM 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDS 714
           +  +    ++L+F +  +PE+S+GKG ++ S      +        +     +    +  
Sbjct: 647 LLSITAAGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHF 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  GS +P+G  R  + 
Sbjct: 707 GKRKLTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|28492973|ref|NP_787134.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist]
 gi|28572181|ref|NP_788961.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
 gi|28410312|emb|CAD66698.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
 gi|28476013|gb|AAO44103.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist]
          Length = 819

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 238/764 (31%), Positives = 380/764 (49%), Gaps = 34/764 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+N+  V LR  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G     A
Sbjct: 1   MSEQNINQVDLREEMQRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYKGGYRPEKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F K AR+VG+V+G+ HPHGD ++YD+LVRL QP+  RYPL  GQGNFG+   D AAA RY
Sbjct: 61  FSKCARVVGDVMGQFHPHGDAAIYDALVRLVQPWAMRYPLAQGQGNFGSPGNDGAAAPRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE +M  +A  +++ +DED VDF   Y+ E  EP V P +FPNLL NG+ GIAVGMAT+I
Sbjct: 121 TETKMATLAIEMVRDIDEDTVDFSPNYDGESVEPTVMPCRFPNLLVNGSVGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN+ E+   AL  ++NP+ + E+L     E I GPDFPTG  ++     I ++Y  GR
Sbjct: 181 PPHNLAEVSAGALWCLENPDATDEELTEALLERIKGPDFPTGATVL-DTGGIKDAYLTGR 239

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G   +R    +EE+  G  C+VV E+PYQV    L  KIA L+   ++  + DIRDE++ 
Sbjct: 240 GSVVMRGVVDIEEID-GRTCLVVRELPYQVNPDNLALKIASLVKENKLSGIADIRDETSG 298

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              + ++    R     +++ S++  + ++  F +NM  +     P+ + L   ++ W+ 
Sbjct: 299 RTGQRLIIVLKRDAVARVVLNSLYKHTQLQENFGVNMLAIVD-GAPRTLSLCSFIRLWVE 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SL 423
           H+ EV+ RR++FR+   ++R  IL+  L A   IDE+I +IR+    +    +      +
Sbjct: 358 HQIEVIVRRTTFRLARAEQRAHILRAYLRALDQIDEVIQLIRSSKSAEEAQSNLMALLKI 417

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q  AIL+L+LR L  LE  +I SE   +         +L+    Q   IA E+RE+ 
Sbjct: 418 DETQARAILDLQLRRLAALERQRIISEAREIEELISSFRKILSDKTAQCQVIAEELREIG 477

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538
           +  S +     RRT          +   + +I  EP+ VV++  G+I+  +         
Sbjct: 478 QKHSDA-----RRTEIIRGFDG--SVSIEDLIPVEPVVVVMTRCGYIKRTRIDQYRSQHR 530

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLL 593
               +     K  D +   +   T + ++  +  G+ Y   A  +        G+ +  L
Sbjct: 531 GGRGVKGAQVKADDVVLQFISTTTHNWLMFFTNTGRVYRAKAYEVPEASREARGQHVANL 590

Query: 594 IDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           + L  N+ +               L++ +  G        E   +   G   +K+   +K
Sbjct: 591 LPLKPNEAVTRILSVSNFDSEDTSLVLATKDGYVKKTTLKEYDTSLSTGVIAIKLRPGDK 650

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +   V    D  + +V +N + L F    +  +SRG  GV+  S ++  +       + +
Sbjct: 651 LVSAVLARSDQDIILVTKNARSLRFKSGTLRPLSRGSYGVKGISLRENDLLLSAELILSD 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                  + R Y +        L  RGG+G  V     + G   
Sbjct: 711 DSYIFVVSERGYAKRSRVGDYKLQARGGIGVRVANITEQKGVLA 754



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKLVVKV--TGDHV 661
            +      + VVS +G A      +     R G       ++ ++ +   + V    D V
Sbjct: 706 LILSDDSYIFVVSERGYAKRSRVGDYKLQARGGIGVRVANITEQKGVLADMLVVNDDDEV 765

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
            V+  + K++  S+ ++    R   GV      DG     +     
Sbjct: 766 LVILASGKVIRSSVAEVSPTLRYTTGVVFVRMSDGDKILAMTIAEK 811


>gi|322437228|ref|YP_004219440.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9]
 gi|321164955|gb|ADW70660.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9]
          Length = 973

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 239/862 (27%), Positives = 390/862 (45%), Gaps = 139/862 (16%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            ++++   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M EMGL F   + KSA+
Sbjct: 50  TSINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYGMQEMGLQFNKKYTKSAK 109

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG V+G  HPHGD ++YD++VRLAQPF  RY ++ GQGNFG++DGDS AA RYTE+R+T
Sbjct: 110 VVGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYLMVDGQGNFGSVDGDSPAAMRYTESRLT 169

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  +L  +D D VDF   Y+E   EP V P++ PNL+ NG+SGIAVGMAT+IP HN+ 
Sbjct: 170 RLAGEMLADIDMDTVDFVPNYDESTLEPSVLPARVPNLIINGSSGIAVGMATNIPPHNLT 229

Query: 198 EICEAALAL-IDNPEISIEKLL---EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           E+  A ++L   +P+ +   L    ++++GPDFPTGG +   R +I ++YR GRG F +R
Sbjct: 230 EVVSACISLLQKSPQDTTPDLELVLQHVLGPDFPTGGTLF-GRTNIPQAYRTGRGRFMMR 288

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL--EDIRDESAEDVRI 311
           A+  +E +  G   IVV EIPYQV KS+LIE+IAEL+    I  +  ++ RDES  D   
Sbjct: 289 AKCHIENISGGRQAIVVDEIPYQVNKSKLIERIAELVNEGIITDIARDEFRDESDRDGMR 348

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  +   + M+  F +   +      P+ +PLD  ++ +L HR EV
Sbjct: 349 IVIGIKRGAEHQIVLNQLHKHTQMQESFSMIF-LAVHNGQPKELPLDKAIRAFLDHRIEV 407

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT------- 424
           + RR++F +     R  IL GL IA  ++D++I IIR          + F+         
Sbjct: 408 VRRRTAFLLAKARDREAILLGLQIALDHLDQVIRIIRQSSSRADARENLFAYFSNRTITL 467

Query: 425 --------------------------------------ENQVDAILNLRLRSLRKLEEYQ 446
                                                   Q+DAIL L+L  L +L   +
Sbjct: 468 RGTELRGITLDPAKYGIDPRLIPPPPANAGTGATLILAYRQIDAILELQLYRLTQLSIDE 527

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           +  EL  +     + +S+LNS  +    IA E+ ++++ +        RRT   +     
Sbjct: 528 LLKELALIRDNIAEFESILNSPAKLRQVIADELAQIRDKYGDP-----RRTIILD---ET 579

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAH 558
                + +I  E + V +SN G+++     +             +  ++ D +   +   
Sbjct: 580 AELGLEDLIADEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRIGMKTRDEDFVAQLIIES 639

Query: 559 TTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVY----DSTC 612
           T   +L  +  G+ Y L    +      G G+A+  L+DL   + +VT        +   
Sbjct: 640 THAYLLCFTNSGRVYWLKIYEIPDTGITGKGKAMASLVDLQPGEKVVTILPVKNLTEEGK 699

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKLL 671
            +L  +  G        +      +G   + +  E+++      TG  V  +   +   +
Sbjct: 700 NILFATRNGTVKKTPLKDFSNVMSRGIIAIGIDKEDELITARITTGSDVVFLATHDGMAI 759

Query: 672 IFSIDQIPEMSR-GKGVRLQSYK------------------------------------- 693
            F+   +  M R   G R  + +                                     
Sbjct: 760 RFNEQDLRPMGRPATGNRGINLRKGDFVIGAAVTPSPEAREKQRRERAEALGLLAQLEDA 819

Query: 694 -----------DGGISDVICFKICEGL--------------TWIDSAGRSYNRSENDLLG 728
                      +G  SDV                         +  +   + +  +    
Sbjct: 820 ITEATDASLVLEGDPSDVAAAPPVSSAKLDKLDEKLGLTPCLILTVSENGFGKRTDVDRY 879

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
            L  RGG G +  K   ++GK 
Sbjct: 880 RLQSRGGTGVINMKTGTKTGKV 901



 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 5/100 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVVKVTGD-HVAVVGENRK 669
           +L VS  G     +       +R G   + + +     K+  +  V     + ++ +  K
Sbjct: 862 ILTVSENGFGKRTDVDRYRLQSRGGTGVINMKTGTKTGKVTSISLVDDTTEMMLISQFGK 921

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           ++     Q+    R   GV+L                 E 
Sbjct: 922 IIRIDTKQVRAAGRSTSGVKLLDLDQDDKVAAAMTIPPED 961



 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I +    +  +   Y +          +RGG G +  K   R   F++
Sbjct: 588 IADEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRIGMKT--RDEDFVA 633


>gi|327401213|ref|YP_004342052.1| DNA gyrase subunit A [Archaeoglobus veneficus SNP6]
 gi|327316721|gb|AEA47337.1| DNA gyrase, A subunit [Archaeoglobus veneficus SNP6]
          Length = 776

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 238/745 (31%), Positives = 398/745 (53%), Gaps = 42/745 (5%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   L+  Y+ YA+S I  RA+PD+RDG KPV RRI++AM EMG+     ++K ARIVG
Sbjct: 6   EISQELKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGITSTKPYRKCARIVG 65

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+GK HPHGD +VYD+LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTEAR+ ++A
Sbjct: 66  DVLGKYHPHGDAAVYDALVRMAQDFAMRYPLIDGQGNFGSIDGDMPAAMRYTEARLAKIA 125

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L  +D+D VDF   ++    EP V P+K PNLL NG SGIAVGMAT++P HN++E+C
Sbjct: 126 EEMLSDIDKDTVDFVPNFDATLKEPSVLPAKIPNLLINGCSGIAVGMATNMPPHNLREVC 185

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A +A + NP+I++ +L++Y+  PDFPTGG ++  R+ ++++Y  G+G   VR R  +E 
Sbjct: 186 DAIIAYLQNPDITVRELMKYVKAPDFPTGG-VIVGRKGLIDAYETGKGKITVRGRVEIE- 243

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  I++ EIPY V K+RL+EKIAELI + ++   + +RDES  +            
Sbjct: 244 ----NNTIIIREIPYMVNKARLVEKIAELINSGKLE-AKTVRDESDREGIR--IVVEVRE 296

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D +  ++ ++  ++++T F +    L     P+++ L  +++ ++ HRR V+ RR+ + +
Sbjct: 297 DINTALKKLYAYTNLQTTFGIINLALVD-NEPRILSLKELIECYVEHRRVVVRRRTQYEL 355

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLR 437
           +    R+ I++GL  A  +ID +I +I++   P       + R+ L+E Q DAIL  RL+
Sbjct: 356 KKAKERLHIVEGLKKAIEDIDNVIQLIKSSSSPSEAKTALMERYELSEVQADAILQTRLQ 415

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  +E   +  E + L+ + ++ + +L S ++    IA E+ E+KE +        RRT
Sbjct: 416 KLTAMEIDALMKEYEELIQKIKEYEEILASPQRIDAIIASELEEIKEKYGDE-----RRT 470

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------KSHSVDLSALHFKEGDS 550
              E    D     + ++  E   ++++  G+++ +           V +  +  +  D 
Sbjct: 471 EIVE---EDGEISAEELVSFEENILIVTKNGFVKRMSIGFKTQHRGGVGVIGIGMRGDDE 527

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY 608
             I +  ++ D++L+ +   KAY L A  +      G+   I++ + +   + IV    +
Sbjct: 528 PAIIVKCNSRDKLLVFTAS-KAYWLNAYEIPKQERTGKGVNIRMYLSIPEGERIVAIVPF 586

Query: 609 DS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
            +    +L+++  G       SE     R G       S  K+     + G  V +   N
Sbjct: 587 QNFEGDILILTEDGYIKRTPLSEFENAKRAGIVA----SGGKIAFARHLDGKEVFIATTN 642

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
              + F  + +PE  R  KGV+  S + G     +     +G   +      + +     
Sbjct: 643 GYAVRFKAEDVPEYGRSAKGVKAISLRQGDSIAWLSCIRGDGD-ILTLTADGHGKRTAVE 701

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFL 751
              L  RG +G +      RSG  +
Sbjct: 702 EYRLVSRGAMGVIN----ARSGGVV 722



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 9/176 (5%)

Query: 522 VVISNRGWIRSLKSHSV-DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           ++++  G+I+        +                       + + +T+G A    A ++
Sbjct: 594 LILTEDGYIKRTPLSEFENAKRAGIVASGGKIAFARHLDGKEVFIATTNGYAVRFKAEDV 653

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                  + +   I L     I           +L +++ G+       E    +R    
Sbjct: 654 PEYGRSAKGV-KAISLRQGDSIAWLSCIRGDGDILTLTADGHGKRTAVEEYRLVSRGAMG 712

Query: 641 FLKVSSEEKMKLVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSR-GKGV----RLQ 690
            +   S   +     V GD   + + ++   L   +  IP   R  +GV    +  
Sbjct: 713 VINARSG-GVVFSEYVEGDEDLLTISKDGYALKIEVKSIPRQGRNARGVIVSRKGI 767


>gi|238896530|ref|YP_002921270.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae NTUH-K2044]
 gi|238548852|dbj|BAH65203.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 752

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 264/749 (35%), Positives = 440/749 (58%), Gaps = 23/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWSKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPPLMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K +    +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SWKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +    D +  +   
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRSYNR 721
            ++L+F +  +P++S+GKG ++ S      +        +     +    I    R    
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFVLPPQSTLTIHVGKRKIKL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +L    G+RG  GS + +G  +  + 
Sbjct: 710 RPEELQKVTGERGRRGS-LMRGLQKIDRV 737


>gi|156973196|ref|YP_001444103.1| DNA topoisomerase IV subunit A [Vibrio harveyi ATCC BAA-1116]
 gi|156524790|gb|ABU69876.1| hypothetical protein VIBHAR_00876 [Vibrio harveyi ATCC BAA-1116]
          Length = 762

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 276/754 (36%), Positives = 446/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  +++++ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLERLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L +
Sbjct: 477 YGD-----DRRSPMVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +  + +   +DG++Y+L + +L S R  GE I   +++    +I   
Sbjct: 531 KSGDKYLAHARGKSNQQAVFFGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSNIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ + SE+++  R GK  + + +  ++     +     D + 
Sbjct: 591 IMGEEEQLWLVGSDAGYGFVCKGSELLSKNRSGKALVTLPANSEVMTPKTIADLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++++GKG ++ +      K+          + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLMALPQGASLTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  GSL+P+G  R  + 
Sbjct: 711 RKLGLKPADLENFRGERGRRGSLLPRGLQRVTRI 744


>gi|27904671|ref|NP_777797.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|31076739|sp|Q89AS3|GYRA_BUCBP RecName: Full=DNA gyrase subunit A
 gi|27904068|gb|AAO26902.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 847

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 240/788 (30%), Positives = 388/788 (49%), Gaps = 48/788 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
             V + +  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM  +  D+  
Sbjct: 2   KEVAKEIIKIDIEDELKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG+IDGDSAAA R
Sbjct: 62  TYKKSARIVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  +L  +D++ V F   Y+  +  P V P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMSKIAYELLNDLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+    LA ID+  I+++KL+E+I GPDFPT G ++  +  I ++Y+ G+G  
Sbjct: 182 IPPHNIKEVINGCLAFIDDQNITLKKLMEHIPGPDFPTAG-LINGKRGIEKAYKTGKGKI 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  +E +       I++ E+PYQV K+R+I+ IA L+  K+I  +  +RDES ++ 
Sbjct: 241 YIRAKSIIEIQKKTKKKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +    ++++  ++ L+ +E  F +NM  L     P+VM L  IL  ++ HRR
Sbjct: 301 MRIVIEIKKETKAEIILNQLYSLTQLEISFGINMVALIH-GQPKVMTLKEILNAFINHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------- 415
           +++ RRS F +  I +++ IL+GL+I+  NID II +I+     +               
Sbjct: 360 KIIMRRSLFELNKIRKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKH 419

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                  +   +F LT  Q+ AIL LRL+ L  LE  ++ SE  
Sbjct: 420 AQYTQILKKNAHSLTPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYK 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            L      ++++L +       +  E+ ++++ F                +         
Sbjct: 480 QLFKTSNNLENILKNNNILTKIMKDELIKIRDNFGDKRRTKINVNYSDINTSDLINKENV 539

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            +       V         + K       A+  KE D ++  L A+T D IL  S+ G  
Sbjct: 540 VITLSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILCFSSKGIL 599

Query: 573 YTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y +    L        G  I  L+ L+ N+ I        Y  +  + + +SKG      
Sbjct: 600 YWMKVYQLPEASRHARGRPIVNLLPLSSNERITAILPISEYKDSINIFMATSKGMVKKTS 659

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK- 685
             E      KG   + + +++++  V    G++ + +     K + FS   + +  R   
Sbjct: 660 LYEFKKPRTKGIIAINLKADDELIGVSLTNGNNTIMLFTAQGKAVHFSEILVRKTGRTAI 719

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GV+    K       +      G   +      Y +        +  R   G++  K   
Sbjct: 720 GVQGIKIKKSDKVVSLVVPKKHG-NILLITEHGYGKRTEIHEFPIKSRATQGTIAMKITK 778

Query: 746 RSGKFLSS 753
           ++G  + +
Sbjct: 779 KNGIVIGT 786


>gi|330008921|ref|ZP_08306327.1| DNA topoisomerase IV, A subunit [Klebsiella sp. MS 92-3]
 gi|328535021|gb|EGF61545.1| DNA topoisomerase IV, A subunit [Klebsiella sp. MS 92-3]
          Length = 755

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 264/749 (35%), Positives = 440/749 (58%), Gaps = 23/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWSKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSSRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K +    +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SWKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +    D +  +   
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRSYNR 721
            ++L+F +  +P++S+GKG ++ S      +        +     +    I    R    
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFVLPPQSTLTIHVGKRKIKL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +L    G+RG  GS + +G  +  + 
Sbjct: 710 RPEELQKVTGERGRRGS-LMRGLQKIDRV 737


>gi|313238121|emb|CBY13219.1| unnamed protein product [Oikopleura dioica]
          Length = 855

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 211/779 (27%), Positives = 375/779 (48%), Gaps = 49/779 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +++K +++   L + +L Y++S I  RA+PD+RDG KP  RR+++AM ++G+  G A
Sbjct: 1   MSNDSIKPINVAEELSQSFLEYSMSVIISRALPDVRDGLKPSQRRVLYAMRQLGVTPGKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             K A+IVGE +G  HPHGDQS+Y +LV + QP+  R  L+ GQGNFG+++GD+AA+ RY
Sbjct: 61  HVKCAKIVGETMGNFHPHGDQSIYSTLVNMGQPWSMREMLVDGQGNFGSVEGDAAASMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+  +   +++ +++  VDF+  Y+    EP V PS FPN L NG +GIAVGMAT++
Sbjct: 121 TEARLHPLGMAMMEDLEKATVDFQPNYDGSQEEPTVLPSAFPNFLVNGGTGIAVGMATNL 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+ +   A ID P+I++ +L++YI GPDFP    I      I E +R GRG  R
Sbjct: 181 APHNLGEVIDGICAQIDKPDITLPELMQYIKGPDFPVSCEIR-GIRGIEEYFRTGRGSMR 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  +EE   G   IV+ E+PY V ++ L E+IAEL+  K +  +  +RD S E+ RI
Sbjct: 240 LRGKVEIEENENGKSFIVIREVPYGVNRAVLQERIAELVNEKTLTGISGMRDLSDEETRI 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
                 R   P +++  +F L+ +ET F +   +      P+ + L   +  ++ HRR+V
Sbjct: 300 E-IELKRDARPQVVVAQLFKLTALETSFSV-NMLAIHQNRPKQLSLKEAIDAYIEHRRDV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           + RR+ F +   + R E+L+  L+A     +   II   +N D+ + +   R+  +E QV
Sbjct: 358 IIRRTRFLLGKAEERAELLEAFLLALGHLDDFIRIIRDSKNRDEARELQGDRYVFSERQV 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL LRL  L  +E+ ++K E D +L E + +  +L    +    I  E+R +++ ++ 
Sbjct: 418 NAILELRLYQLTGMEQDKVKGEYDGILIEIKDLLDILAREVRVLTIIKDELRVIRDKYAT 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL----- 543
                      C +         + +I  + + V +S+RG+++   +    L        
Sbjct: 478 PRK--------CPILAEAGEVAMEDLIANDAMIVTLSHRGYVKRTPATEYRLQGRGGKGL 529

Query: 544 ---------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                      +  D ++        D +L  +  G+ Y      L        G +I+ 
Sbjct: 530 KGMETKATGKDEPDDFVEHLFSVQAHDYLLFFTNTGRVYVERVFELPEGSRTSTGRSIKN 589

Query: 593 LIDLNHNQDIVTAFVY--------------DSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +++L  ++ I                    +    +   +  G       ++     + G
Sbjct: 590 VLNLKPDEKIAALLRLERTTDDNGNDITFREDAGFVFFATRNGKVKKTALNDFRNYRKDG 649

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKD 694
              + +     +  V   +G D + +V  +   + F+    QI    R   GV     + 
Sbjct: 650 IIAINLDEGNDLIGVSLTSGEDEIVLVTRDGMSIKFTEGRPQIRPQGRATAGVTGIRLRK 709

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +   + E    + ++     +          +RGG+G        ++GK +++
Sbjct: 710 DDYVVGMAI-VSEETMLLVASENGLGKRTAFSSYRPLRRGGLGVKTLNVTDKTGKVVNA 767



 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 79/256 (30%), Gaps = 8/256 (3%)

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
            +    S       I   +    +    +     R T         +             
Sbjct: 573 FELPEGSRTSTGRSIKNVLNLKPDEKIAALLRLERTTDDNGNDITFREDAGFVFFATRNG 632

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK-AYTLPAGN 579
            V  +     R+ +     + A++  EG+ L         D I+L++ DG          
Sbjct: 633 KVKKTALNDFRNYRKD--GIIAINLDEGNDLIGVSLTSGEDEIVLVTRDGMSIKFTEGRP 690

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
            +  +G   A    I L  +  +V   +      LLV S  G       S      R G 
Sbjct: 691 QIRPQGRATAGVTGIRLRKDDYVVGMAIVSEETMLLVASENGLGKRTAFSSYRPLRRGGL 750

Query: 640 TFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
               ++  +K    +  V     D + ++    + +   +++I E  R  +GV+L + K+
Sbjct: 751 GVKTLNVTDKTGKVVNAVSVTEQDELMLMTSTGQSIRIRVNEIRETGRVAQGVKLLTLKE 810

Query: 695 GGISDVICFKICEGLT 710
           G     I   I +G  
Sbjct: 811 GEKLQDISLVIPDGED 826


>gi|298253026|ref|ZP_06976818.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
 gi|297532421|gb|EFH71307.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
          Length = 876

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 226/772 (29%), Positives = 375/772 (48%), Gaps = 28/772 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++   +    VK + L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G 
Sbjct: 33  TDYGLMKGARVKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGY 92

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D A
Sbjct: 93  RPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPA 152

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVG
Sbjct: 153 AAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVG 212

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN+ E+ +     +D+P+ S E+    L++ I GPDFPTG  I+   + I ++
Sbjct: 213 MATNIPPHNMCEVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATIL-GHKGIEQA 271

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  + D+R
Sbjct: 272 YRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMR 330

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  +
Sbjct: 331 DETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFI 389

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---V 418
           + W+ H+ EV+ RR+ +  +  + R  IL+G L A   IDE++A+IR+    +      +
Sbjct: 390 RHWVTHQLEVIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLM 449

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           +   + E Q DAIL ++LR L  LE  +I  E ++L+ +    + +L S ++Q   +  E
Sbjct: 450 NLLDVDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDILASPERQRKIVGDE 509

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+   +           +         A     +       +  +     R+      
Sbjct: 510 LDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGK 569

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y L A  L  G    +   +  L+  
Sbjct: 570 GIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGSRDSKGQHVANLLQF 629

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
              + I        YD    L++ +  G        E  +  + G   +++ +       
Sbjct: 630 TPGETIQAVLSIPNYDVAKYLVLATRSGKVKKTALQEYDSPRQGGLIAVRLMANEETGEP 689

Query: 648 -EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG-ISDVI 701
            +++         D + +V +    L F  D   +  M R   GV+   +++G  + D+ 
Sbjct: 690 VDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTAGVQGMRFREGDELLDMD 749

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +      + +        L  R G G    +     G  + +
Sbjct: 750 VVAAETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGA 801


>gi|307292755|ref|ZP_07572601.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1]
 gi|306880821|gb|EFN12037.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1]
          Length = 894

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 240/834 (28%), Positives = 379/834 (45%), Gaps = 96/834 (11%)

Query: 6   ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +++   L +  ++  +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ +  E 
Sbjct: 1   MTDETALADPSDISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSAHES 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      ++KSARIVG+VIGK HPHGD ++YD+L R+ Q +  R PLI GQGNFG++D D
Sbjct: 61  GFTHNKPYRKSARIVGDVIGKYHPHGDSAIYDALARMTQDWSMRVPLIDGQGNFGSMDPD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+ +V   +L  +D+D VDF+  Y+  +SEP V P++FPNLL NG  GIA
Sbjct: 121 PPAAMRYTEARLAKVTTALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAGGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+  A LA I+NP I+I++L++ + GPDFPT   ++  +     +Y 
Sbjct: 181 VGMATNIPPHNLGEVIRACLAYIENPGITIDELIQIVPGPDFPTAP-LILGQSGARSAYH 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +R+R  +EE       IV+T IPYQV K+ L+EKIAE    KRI  + DIRDE
Sbjct: 240 TGRGSIMMRSRHKIEEGRGDRQSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R   P++++  ++  +  ++ FP    +   G  P+++ +  I++ +
Sbjct: 300 SNREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPA-NMLAIRGGRPELLNIRDIIEAF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------ 418
           +  R EV+ RR+ + +     R  IL GL+IA  N+DE++ IIR    P           
Sbjct: 359 VRFREEVITRRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLARD 418

Query: 419 ----------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L++ QV AIL+LRL  L  L   +I SEL  L A
Sbjct: 419 WPVAEIAPYLKLVEAIETEASGDTYRLSDTQVRAILDLRLHRLTALGRDEIGSELAELAA 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              +  ++L    + +  +  E   ++  F+             E++ A      + +IE
Sbjct: 479 AIAEYLAILGDRVKLYAVMREEFEAIERDFATPR--------LSEITAAADGIEDEDLIE 530

Query: 517 KEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V ++ +G+I+                 S +  K+ D++       T   +L  ST
Sbjct: 531 REEMVVTVTVQGYIKRTPLESFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFST 590

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            GK Y L    L        G  +  L+ L   + I T               ++  ++ 
Sbjct: 591 AGKVYRLKVWRLPEGGPATRGRPMVNLLPLGPGETIQTVLPLPEDEDSWKDLHVMFATAN 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSS--EEKMKLVV-KVTGDHVAVVGENRKLLIFSIDQ 677
           G                GK  ++     ++++  V      D V +     K + F    
Sbjct: 651 GTVRRNSMDAFANVPSNGKIAMRFDDDSDDRLIGVALLTEEDDVLLATRQGKAIRFQATD 710

Query: 678 IPE-MSRG-KGVRLQSYKDGGIS------------------------------------D 699
           + E  SR   GVR  + K                                         D
Sbjct: 711 VREFQSRTSTGVRGMTLKGDDEVISLSILHRSGADQDQREEYLRFAPWKPEKEGEMQDQD 770

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +           +      Y +  +        RGG G        R+G  ++S
Sbjct: 771 MFALMKEREQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRNGPVVAS 824



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDH 660
           A + +    +L V + G   +    E     R G+    + +       +        D 
Sbjct: 773 ALMKEREQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRNGPVVASFPATQADQ 832

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           + +V +  KL+   +D +  + R   GVRL +  D     V   KI E     D+A 
Sbjct: 833 LMLVTDQAKLIRMGLDSLRVIGRSSAGVRLFNVSDDEHV-VSAAKIEESDEAEDTAE 888


>gi|320533166|ref|ZP_08033888.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134626|gb|EFW26852.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 893

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 242/777 (31%), Positives = 397/777 (51%), Gaps = 43/777 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++  V E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 15  TSIAVPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 74

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            A+F KS+R+VG+V+G  HPHGD ++YD+L RL Q +  RYPL++GQGNFG       AA
Sbjct: 75  TASFSKSSRVVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAA 134

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +L+ +DED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMA
Sbjct: 135 PRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMA 194

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYR 244
           T IP HN++E+   A   +++P+ S E+    L+E I GPDFPTG  I+  R  I ++YR
Sbjct: 195 TRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYR 253

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE
Sbjct: 254 TGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDE 312

Query: 305 SA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++    + ++    R     +++ +++  + ++  FP NM  L    VP+ + LDG ++ 
Sbjct: 313 TSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVD-GVPRTLSLDGFVRH 371

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           W++H+ +V+ RRS FR++  + R+ IL+GLL A   +D +IA+IR     +         
Sbjct: 372 WVSHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMGL 431

Query: 423 --LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q +AIL+L+LR L  LE  +I+ E D L A  + +  ++ S ++Q   ++ E+ 
Sbjct: 432 LDVDEAQAEAILSLQLRRLAALERLKIQEESDELRARVKDLREIIASPERQRGIVSDELA 491

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-- 538
           E+ E +        RRT              + +I +E + V I+  G+ +  ++ S   
Sbjct: 492 EIVEKYGDE-----RRTRIVPFDGEMS---MEDLIPEEDVVVTITRSGYAKRTRTDSYRS 543

Query: 539 ------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AI 590
                  +     +E D +       T   +L  +  G+ Y      L  G    +   +
Sbjct: 544 QHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDSKGQHV 603

Query: 591 QLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+     ++I        YD    L++ + +G       SE  +N   G   + +  +
Sbjct: 604 ANLLAFQPGEEIAQVMELRDYDQADFLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQD 663

Query: 648 -----EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGIS 698
                +++     + TG  + +V    + L F  D   +    R   GV    +++G   
Sbjct: 664 EDGNYDELVSARLLSTGQDLLLVSHAGQSLRFHADDDTLRPTGRATSGVTGMRFREGDYL 723

Query: 699 DVICFKIC--EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +       +           Y +  N +   +  RGG+G  V       G  + +
Sbjct: 724 LAMDVVDPSWQDADLFVVTEGGYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGA 780


>gi|87199935|ref|YP_497192.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444]
 gi|87135616|gb|ABD26358.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444]
          Length = 908

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 244/836 (29%), Positives = 375/836 (44%), Gaps = 85/836 (10%)

Query: 1   MGVDN--ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  D   I       E   + + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+
Sbjct: 1   MSDDTTIIDPPAPAPEGEFQRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
               E G     A++KSARIVG+ +GK HPHGD ++YD+L R+ Q +  R PLI GQGNF
Sbjct: 61  WTSHENGFVSTKAYRKSARIVGDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++D D  A+ RYTEAR+ +VA+ +L  +D+D VDF+  Y+  + EP V P++FPNLL N
Sbjct: 121 GSMDPDPPASMRYTEARLAKVADSLLADIDKDTVDFQPNYDGAEHEPQVLPARFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GIAVGMAT+IP HN+ E+ +A LA +DNP ++I++L++ I GPDFPT   ++     
Sbjct: 181 GAGGIAVGMATNIPPHNLGEVIDACLAYMDNPLVTIDELIQIIPGPDFPTAP-LILGTAG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             ++Y  GRG   +RAR  +EE       IV+T IPYQV KS L+EKIAE    KRI  +
Sbjct: 240 ARKAYHEGRGSIIMRARHQIEEGRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRIEGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            DIRDES  +   V+    R   P++++  ++  +  ++ FP    +   G  P+V+ L 
Sbjct: 300 SDIRDESNREGVRVVIDLKRDATPEVVLNQLWRNTPAQSSFPA-NMLAIRGGRPEVLNLK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------- 411
            I++ ++  R EV+ RR+ F +     R  IL GL+IA  N+DE++ IIR          
Sbjct: 359 DIIESFVRFREEVITRRTKFELNKARDRAHILLGLVIAVTNLDEVVRIIRGSPNPAVARE 418

Query: 412 -----------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                         + + L+E QV AIL+LRL  L  L   +I 
Sbjct: 419 TLLAREWPMGEIAPYIRLVEAIEDAGVAEAATYRLSEIQVRAILDLRLHRLTALGRDEIG 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            EL+ L     +  S+L   ++ +  +  E+ EV+  F+                     
Sbjct: 479 DELEGLAKAIAEYLSILADREKLFGVMRQELLEVQHAFATPRKSEITAPADGIEDEDLIE 538

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       +  +     R+        S +  K+ D++       T   +L  ST
Sbjct: 539 REDMVVTITLDGYIKRTPLSTFRAQNRGGKGRSGMATKDEDAVATMFVTSTHTPVLFFST 598

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLID-LNHNQDIVTAFVYDSTC------KLLVVSS 619
            GK Y L    L        G  +  ++  L+ ++ I T               ++  ++
Sbjct: 599 AGKVYRLKVWRLPEGGPTTRGRPVVNMLPALDKDETIATVLPLPEDEAEWGKLSVVFATA 658

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSE--EKMKLVVKVT-GDHVAVVGENRKLLIFSID 676
           KGN               GK  +K   +  +++  V  +   D V +   + K + F+ D
Sbjct: 659 KGNVRRNSMDAFANIPSNGKFAMKFEEDSADRLIGVALLEASDDVLLATRSGKAIRFAGD 718

Query: 677 QIPE-MSRG-KGVRLQSYKDGGISDVICFKICEGLT------------------------ 710
           ++ E  SR   GVR  + K       +      G T                        
Sbjct: 719 EVREFTSRTSTGVRGMTLKGDDEVISLSILHRVGTTPDEREDYVRFAPWKGEKEGEPALS 778

Query: 711 -------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                         +      Y +  +        RGG G        R+G  ++S
Sbjct: 779 AERYAELQAREQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRNGPVVAS 834



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGE 666
              +L V + G   +    E     R G+    + +       +        D + +V +
Sbjct: 789 EQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRNGPVVASFPATQADQLMLVTD 848

Query: 667 NRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG-ISDVICFKICEGLT 710
             KL+   +D +  + RG  GVRL +   G  +   +     EG  
Sbjct: 849 QAKLIRLPLDSLRVIGRGSAGVRLFNVSGGEHVVSAVRLAEEEGAE 894


>gi|116071053|ref|ZP_01468322.1| DNA gyrase subunit A [Synechococcus sp. BL107]
 gi|116066458|gb|EAU72215.1| DNA gyrase subunit A [Synechococcus sp. BL107]
          Length = 876

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 232/794 (29%), Positives = 391/794 (49%), Gaps = 64/794 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +    LR  +   Y+ YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDERIIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +  + +L+ ++ + VD+ D ++    EP V P++ P LL NG++GIAVGMAT+I
Sbjct: 135 ESRLQALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +ALI+NPEIS ++L+  I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 195 PPHNLNELIDGLMALINNPEISDQELMTLIPGPDFPTGGQIL-GRTGIRETYLSGRGSVT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    VE +          +++T +PYQ  K+ LIE+IAE++  K++  + DIRDES  
Sbjct: 254 MRGVAEVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  +M  L     P ++ L  +L+ +L  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALV-NGEPILLTLRKMLEVFLDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLT 424
           R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L+
Sbjct: 373 RIETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQDRHGLS 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++    I  E+ +++E
Sbjct: 433 AVQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVLGIIQEELGQLRE 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SH 536
             S       RRT   +++   +      +I  E   V+++  G+++ +           
Sbjct: 493 RHSVP-----RRTEILDLAGGLEDI---DLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
           +   +    +  +++K+ +  +  D +LL S  G AY LPA  +       +   +  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I +      ++    LL+++  G       S        G   + +   + + 
Sbjct: 605 PIPREEAITSLLAVSEFNDDTDLLMLTQGGFIKRTRLSAFSNIRSNGLIAIGLEDGDALT 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVI------ 701
            V   + GD V +  +    + F +    +  + R  +GVR  + + G     +      
Sbjct: 665 WVRLSIPGDSVLIGSKAGMTIHFRLADGELRPLGRTARGVRSMNLRKGDSLVSMDVLPAE 724

Query: 702 -----------------------CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
                                       EG   + ++     +        L KR G+G 
Sbjct: 725 LADQIAASADDVGDGDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGL 784

Query: 739 LVPKGFPRSGKFLS 752
              K    + + + 
Sbjct: 785 RAMKFRTDADELVG 798



 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLVVKV-TGDHVA 662
           V      +LV S+ G    V  ++     R G     +K  ++ +++  +  +  G+ + 
Sbjct: 750 VAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVGLRVLGAGEELL 809

Query: 663 VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           +V E   ++  S D IP+ SR   GVRLQ    G     +     E  T
Sbjct: 810 LVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLADVVLVPPEAET 858


>gi|323188545|gb|EFZ73830.1| DNA topoisomerase IV, A subunit [Escherichia coli RN587/1]
          Length = 752

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +A +ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAVIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 476 -----RRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   S+++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFSDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|292486947|ref|YP_003529817.1| topoisomerase IV subunit A [Erwinia amylovora CFBP1430]
 gi|292900662|ref|YP_003540031.1| DNA topoisomerase IV subunit A [Erwinia amylovora ATCC 49946]
 gi|291200510|emb|CBJ47639.1| DNA topoisomerase IV subunit A [Erwinia amylovora ATCC 49946]
 gi|291552364|emb|CBA19409.1| topoisomerase IV subunit A [Erwinia amylovora CFBP1430]
 gi|312171015|emb|CBX79274.1| topoisomerase IV subunit A [Erwinia amylovora ATCC BAA-2158]
          Length = 758

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 274/757 (36%), Positives = 448/757 (59%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LSNTAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPSMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+ +AA+ LID+P  S+++LL+ + GPD+PT   I+  R  I + Y+
Sbjct: 178 VGMATDIPPHNLREVAKAAITLIDSPTTSLDELLDIVQGPDYPTEAEIITPRNEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  EE       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDE
Sbjct: 238 NGRGSVRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+++ +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL 
Sbjct: 293 SNHENPTRLVIVPRSQRVDMEQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF 
Sbjct: 353 EWLVFRRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPVLMSRFD 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E+  ++ LL S ++    +  E++  
Sbjct: 413 ISEIQAEAILELKLRHLAKLEEMKIRGEQDELEKERAHLEGLLGSERKLNTLLKKELQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D + 
Sbjct: 473 SDAYGDE-----RRSPLREREEA-KAIGEHELMPSEPVTIVLSQSGWVRSAKGHDIDPAG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS   A    +   ++ + + G++Y L    L S RG GE +   +       +
Sbjct: 527 LSYKAGDSFLGAARGKSNQPVVFIDSTGRSYALDPVTLPSARGQGEPLTGKLTPPPGAVV 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660
               + D T KLL+ S  G  F+   S++++  R GK  L + S  ++   + +    D 
Sbjct: 587 EQVLMADDTQKLLMASDAGYGFVCTFSDLVSRNRAGKALLTLPSNARVMAPLAIHRNDDL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWID 713
           +  +    ++L+F +  +P++S+GKG ++ S         +  ++ ++     E    + 
Sbjct: 647 LLAITAAGRMLMFPVGDLPQLSKGKGNKIISIPSAEAASGEDKLAWLLLLT-PENAITLY 705

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              R       DL  +   RG  G+L+P+G  R  + 
Sbjct: 706 VGKRKLTLKAADLQKFRADRGRRGTLLPRGLQRIDRV 742


>gi|254281513|ref|ZP_04956481.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR51-B]
 gi|219677716|gb|EED34065.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR51-B]
          Length = 749

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 274/744 (36%), Positives = 442/744 (59%), Gaps = 25/744 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ +S+R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  G+ +KKSA
Sbjct: 11  VETLSMRDYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKAGSKYKKSA 70

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEAR 135
           R VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   S AA RYTE++
Sbjct: 71  RTVGDVIGKFHPHGDSAAYEAMVLMAQDFSYRYPLVDGQGNWGSADDPKSFAAMRYTESK 130

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + AE++L  + +  VD++  ++   +EPVV P++ PN+L NGT+GIAVGMAT +P HN
Sbjct: 131 LARYAEVLLGELGQGTVDWQPNFDGTLNEPVVLPAQVPNVLLNGTTGIAVGMATDVPPHN 190

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++EI +A + L++NP+ ++  L EY+ GPD+PT   I+   + +   Y+ GRG  ++RA 
Sbjct: 191 LREIVDATVHLLENPKATVADLCEYVKGPDYPTDSEIITPEDDLQAMYQSGRGSVKMRAS 250

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVL 313
           W VE+       IVV  +PYQV  SR++E+IA  + A+++P++ D+RDES  +   R V+
Sbjct: 251 WSVED-----GAIVVNALPYQVSGSRVLEQIAAQMQARKLPMVSDLRDESDHEHATRFVI 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P++  +D + LM  +F  +D+E  + +N+N++ +   P V  L+ IL EWL  RR  + 
Sbjct: 306 VPRSNRVDLEGLMSHLFATTDLERNYRVNLNLIGIDGRPAVKALNVILGEWLRFRRTTVQ 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RR   R+  ++RR+ +L+G LIAYLNIDE+I IIR E++PKP +++RF L++ Q +AIL+
Sbjct: 366 RRLEHRLDRVNRRLHVLEGYLIAYLNIDEVIRIIREEEEPKPALIARFGLSDVQAEAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+LR+L KLEE +I+ E D L AE++K++  L S  +    I  E+  V E+        
Sbjct: 426 LKLRNLAKLEEMKIRGEQDELAAERDKLELTLGSDARMKTLIKKELMAVAEVHGDE---- 481

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RR+   +   A   +  +     +P+T+V+S  GWIR+ K H +D ++L++K GD  K+
Sbjct: 482 -RRSPITQREEARPFSETEL-ASSDPLTIVLSEMGWIRAAKGHDIDPTSLNYKSGDGFKL 539

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A    +    ++  + G+AY++ +  L S RG GE +   I+               + K
Sbjct: 540 AARGKSNLPTVVFDSTGRAYSIASHALPSARGQGEPLTGRINPPSGATFEGLLTGADSDK 599

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH--VAVVGENRKL 670
            L+ S  G  F+   +++ +  + GK  L +    ++     V  GD   VA V    +L
Sbjct: 600 FLLASDAGYGFVARFADLQSKNKAGKACLNLPKGARVLQPAAVPLGDQLLVAAVTSLGRL 659

Query: 671 LIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           L+F +  +PEM+RGKG ++          ++  +  V   +  + L    +  +      
Sbjct: 660 LVFPLSDLPEMARGKGNKIIGIPGPKAAAREEVVVGVCAMRSDDVLEV-TAGKQHLKLKP 718

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRS 747
            DL  + G+RG  G+ +PKGF + 
Sbjct: 719 ADLEHYRGERGRRGNKLPKGFQKV 742


>gi|113971561|ref|YP_735354.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-4]
 gi|113886245|gb|ABI40297.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-4]
          Length = 758

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 262/757 (34%), Positives = 434/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     +  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSLKARAVYSVE-----AGEIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKDLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RF+
Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLELLLGSDRRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   +   T Q+     EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 GETYGD-----DRRSPIVERHESRALTEQEL-TPSEPVTVVLSEKGWVRCAKGHDIDAES 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   + +L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
               + +     L+ +  G  FI   +++++  + GK  L +    K      +      
Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTYNDMVSRNKAGKALLSLPPNAKSLPPRLIDRSREM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++             +   +     +    + 
Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTPVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|152971954|ref|YP_001337063.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956803|gb|ABR78833.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 752

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 264/749 (35%), Positives = 440/749 (58%), Gaps = 23/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWSKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K +    +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SWKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +    D +  +   
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRSYNR 721
            ++L+F +  +P++S+GKG ++ S      +        +     +    I    R    
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFVLPPQSTLTIHVGKRKIKL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +L    G+RG  GS + +G  +  + 
Sbjct: 710 RPEELQKVTGERGRRGS-LMRGLQKIDRV 737


>gi|260857155|ref|YP_003231046.1| DNA topoisomerase IV subunit A [Escherichia coli O26:H11 str.
           11368]
 gi|257755804|dbj|BAI27306.1| DNA topoisomerase IV subunit A [Escherichia coli O26:H11 str.
           11368]
 gi|323154718|gb|EFZ40917.1| DNA topoisomerase IV, A subunit [Escherichia coli EPECa14]
          Length = 752

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 270/750 (36%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++E+LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLEQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|300937506|ref|ZP_07152328.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 21-1]
 gi|300457445|gb|EFK20938.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 21-1]
          Length = 752

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISSLPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|238793643|ref|ZP_04637266.1| DNA topoisomerase 4 subunit A [Yersinia intermedia ATCC 29909]
 gi|238727058|gb|EEQ18589.1| DNA topoisomerase 4 subunit A [Yersinia intermedia ATCC 29909]
          Length = 755

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 282/756 (37%), Positives = 444/756 (58%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+EI +A LALID P  S+E+LLE++ GPDFPT   I+  R+ I + Y+
Sbjct: 178 VGMATDIPPHNVREIAQAVLALIDKPTASLEELLEFVQGPDFPTEAEIITPRDEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 NGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+
Sbjct: 353 EWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFA 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AAAYGD-----DRRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G    
Sbjct: 587 EQVLMAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALTPLEIHGPDDM 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKICEGLTW-IDS 714
           +  +    ++L+F +  +PE+S+GKG ++ S        G       F +    +  +  
Sbjct: 647 LLSITAAGRMLMFPVADLPELSKGKGNKIVSIPSAQAAAGEDRLAWLFVLPPQTSITLHF 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  GS +P+G  R  + 
Sbjct: 707 GKRKLTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|301643612|ref|ZP_07243653.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 146-1]
 gi|301077996|gb|EFK92802.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 146-1]
          Length = 752

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D   +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMAQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|24375385|ref|NP_719428.1| DNA topoisomerase IV subunit A [Shewanella oneidensis MR-1]
 gi|24350215|gb|AAN56872.1|AE015822_4 DNA topoisomerase IV, A subunit [Shewanella oneidensis MR-1]
          Length = 758

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 264/757 (34%), Positives = 437/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVNACVALLDEPKLDLEQLMAYVPGPDYPTEAEIITPAADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     +  IV+T +P+Q    +++E IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSLKARAVYSVE-----AGEIVITALPHQASSGKILELIAAQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVIVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKDLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RF+
Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLEQLLGSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   +   T Q+     EP+TVV+S++GW+RS K H +D  +
Sbjct: 476 GETYGD-----DRRSPIVERHESKALTEQEL-TPSEPVTVVLSDKGWVRSAKGHDIDAES 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   + +L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--- 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K      +  +   
Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTFNDMVSRNKAGKALLSLPTNAKSLPPKPIDRNREM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++             +   +     +    + 
Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSM 746


>gi|260775391|ref|ZP_05884288.1| topoisomerase IV subunit A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608572|gb|EEX34737.1| topoisomerase IV subunit A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 756

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 275/754 (36%), Positives = 447/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNP+  +  ++ ++ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKSELADVMNFVQGPDYPTEAEIISPKAELEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE-----GGDIVITALPHQVSGAKLLEQIASQMRAKKLPMVDDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +T+
Sbjct: 357 EFRRATVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E + L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQEELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S++GWIR  K H VD   L++
Sbjct: 477 YGD-----DRRSPLVERAEA-KALTERDLVPSEPITVVLSDKGWIRHAKGHDVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +  + + L +DG++Y+L + +L S R  GE I   +++N   +I   
Sbjct: 531 KSGDKYLAHARGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNINAGTNIRHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ + S++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPQNSEVMTPDTISNLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++ +GKG ++ +      K+          + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKEREEMVSHLMSLPQGASVTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  GSL+P+G  R  + 
Sbjct: 711 RKLGLKPADLDNFRGERGRRGSLLPRGLQRVTRI 744


>gi|121998761|ref|YP_001003548.1| DNA topoisomerase IV subunit A [Halorhodospira halophila SL1]
 gi|121590166|gb|ABM62746.1| DNA topoisomerase IV subunit A [Halorhodospira halophila SL1]
          Length = 750

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 278/752 (36%), Positives = 427/752 (56%), Gaps = 25/752 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +      + +   LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSEN---AASDFETQPLREFTERAYLDYSMYVILDRALPHVSDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   
Sbjct: 58  LSAAAKYKKSARTVGDVLGKYHPHGDAACYEAMVHMAQPFTYRYPLIDGQGNWGSPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+T  A ++L  + +  V++   ++    EP   P++ PN+L NG SGIA
Sbjct: 118 SFAAMRYTEARLTPYARVLLNELGQGTVEWIPNFDGALQEPERLPARLPNVLLNGGSGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+ +A + L+D PE +  +L E++  PDFPT   ++  RE +   Y 
Sbjct: 178 VGMATDIPPHNLREVVDACVHLLDRPEATTAELCEHVPAPDFPTASDVITPREELRTIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RARW   E  R    IV+  +PYQV  ++++E+IA  I ++++P++ED+RDE
Sbjct: 238 RGHGTVRARARW---EYEREQAQIVIHALPYQVAGAKVMEQIAAQIQSRKLPMVEDLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  D  VRIV+  ++R  DP+ +M+ +F  +D+E  + +++NV+ +   P+V  L  +L 
Sbjct: 295 SDHDAPVRIVVQLRSRRQDPERVMDHLFATTDLERGYRVHLNVIGLDGRPRVFSLRDLLA 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ R E + RR ++R++ ++ R+ IL+GLL AYLNIDE+IAIIR ED+PKPV++ RF 
Sbjct: 355 EWLSFRTETVRRRLTWRLEKVEDRLHILEGLLTAYLNIDEVIAIIREEDEPKPVLMERFG 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL LRLR L +LEE +I+ E  +L  E++++ + L    +   Q+  E+   
Sbjct: 415 LSDAQAEAILELRLRHLARLEEMKIRGEQGDLERERDELRATLGDAARLREQVKSELLGD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E          RR+   +   A      + M   EP+TVV+S +GW+R+ K H VD + 
Sbjct: 475 AEAHGDE-----RRSPLVQRGPARAMDETELM-PSEPVTVVLSEKGWVRAAKGHEVDATG 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD         +    + L + G+AY +PA  L S R  GE +   +        
Sbjct: 529 LSYKAGDGYLDHALGRSNQPAIFLDSTGRAYAVPAHTLPSARSQGEPLTKRLTPPEKARF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TG 658
            +    DS  + L+ S  G  F V   E+ +  R GK  L +     +   V V     G
Sbjct: 589 QSVLAGDSESRWLLASDAGYGFRVPLRELFSRNRSGKAVLTLPDGAAVLPPVTVPAEADG 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICEGLTW-I 712
             V V   + +LL+F ++++PEM+RGKG +L        +D     V    +  G    +
Sbjct: 649 AEVVVASSDGRLLVFPLEELPEMARGKGNKLIGIPAQRLRDREEVVVAVAVLPAGAALRV 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           ++       S +DL  +   RG  G  +P+G 
Sbjct: 709 EAGKTGKRLSHSDLEAFRAARGRRGVQLPRGL 740


>gi|329115618|ref|ZP_08244340.1| DNA topoisomerase 4 subunit A [Acetobacter pomorum DM001]
 gi|326695046|gb|EGE46765.1| DNA topoisomerase 4 subunit A [Acetobacter pomorum DM001]
          Length = 735

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 366/732 (50%), Positives = 513/732 (70%), Gaps = 6/732 (0%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +    +++   L  AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ LD  +
Sbjct: 2   SETAGHIEETKLAEALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLVYAMHQLRLDPAS 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG++DGD+ AA R
Sbjct: 62  GFKKCARVVGDVIGKFHPHGDASVYEALVRLAQDFAARYPLVEGQGNFGSVDGDNPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+T+VA  +L G+++DAVDFR TY+ E+ EPVV PS FPNLLANG +GIAVGMATS
Sbjct: 122 YTEARLTEVAVALLDGIEDDAVDFRPTYDGEEQEPVVLPSAFPNLLANGAAGIAVGMATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+C AA  L+  P  + ++LLE + GPDFPTGG+IVE  ++I+++Y  GRG F
Sbjct: 182 IPPHNAAEVCAAAALLVRKPSATTQELLELMPGPDFPTGGLIVEDSDAILQAYETGRGSF 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R+RARW VE+    +W IVVT+IPYQVQKSRLIE+IA+L+  K++PLL DIRDES +++R
Sbjct: 242 RMRARWEVEQGRFSTWHIVVTQIPYQVQKSRLIEQIADLLDQKKLPLLGDIRDESTDEIR 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           ++L PK R ++P++LME++F  + +E+RF LNMNVL   R P VM L  +++ WL HR E
Sbjct: 302 LILEPKTRGIEPEVLMETLFRATPLESRFGLNMNVLGADRSPGVMGLKQVIQAWLNHRHE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RRS  R+ A++RR+EIL G L  YLN+DE+I IIR ED  K  +++ F LT+ Q ++
Sbjct: 362 VLERRSRHRLTAVERRLEILSGFLAVYLNLDEVIRIIREEDDAKASLIATFKLTDLQAES 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +LN+RLRSLR+LEE +I+ E D L AE+  + +LL+S KQ+W  I  E+  + + F K  
Sbjct: 422 VLNMRLRSLRRLEEMEIRKEHDALSAEQAALMALLDSEKQRWKTIERELTTMIKAFGKGR 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
              RR T        D + +++  +E+EP+T+++S +GW+R++K H+VDL    FKEGD+
Sbjct: 482 LGERRSTILSAPKPVDISVVEE--VEREPLTMILSQKGWVRAVKGHNVDLENQKFKEGDA 539

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
            K+A+   T+DR+   +TDG+AYT+   +L  GRG G+ I+LLIDL++++D++  F  + 
Sbjct: 540 FKLAIPCQTSDRLCFFATDGRAYTVKGADLPRGRGDGQPIRLLIDLSNDEDLLAVFPIED 599

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
             + LV SS G   +VEE  ++A  R G+  L +   E  ++ V   GDHVAVVG+NR+ 
Sbjct: 600 GKRRLVASSAGRGMLVEEEALVAEKRSGRQVLNLKEGEFARICVPAEGDHVAVVGDNRRF 659

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           LIF ++Q+P M+RG GV LQ Y D GG+   + F   +GL W    G +  R   DL  W
Sbjct: 660 LIFPLEQLPVMARGLGVALQKYSDGGGLRQAVVFTAADGLHW---PGTARVRQFADLQDW 716

Query: 730 LGKRGGVGSLVP 741
           + +R  VG + P
Sbjct: 717 VSRRAAVGKVAP 728


>gi|269115201|ref|YP_003302964.1| DNA gyrase subunit A [Mycoplasma hominis]
 gi|11068127|gb|AAB37247.2| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114]
 gi|268322826|emb|CAX37561.1| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114]
          Length = 911

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 251/759 (33%), Positives = 405/759 (53%), Gaps = 30/759 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             +K  +L   ++  ++ YA+S I  RA+PD RDG KPVHRRI++ MSE+G+ + A  KK
Sbjct: 76  NGLKPANLSKVMKTSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFYTAPHKK 135

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPLI G GNFG++DGD AAA RYTEA
Sbjct: 136 SARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSVDGDEAAAMRYTEA 195

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  ++ G+ ++ VDF D Y+  + EPVV PS+FPNLL +G+SGIAVGMAT+IP H
Sbjct: 196 RMSKIAGAMVDGIKKNTVDFMDNYDATEKEPVVLPSRFPNLLVSGSSGIAVGMATNIPPH 255

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A  AL  NPEI++ +L+EYI  PDFPTGG I+ +++ ++E+Y  GRG   +R+
Sbjct: 256 NLGETIDAVCALAKNPEINVFELMEYIQAPDFPTGG-IIFNKKGLIEAYSTGRGSITIRS 314

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++E+  G   I+VTEIPY+V+K+ ++EKI+ELI  K+I  + D RDES  D   ++ 
Sbjct: 315 KAHIQELSNGKSKIIVTEIPYEVKKTEIMEKISELIKDKKIDGIADFRDESNRDGIRIVI 374

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +S  P++++ ++F L+ +++ +  NM  L     P+++ L   L+ +L H+ EV+ R
Sbjct: 375 DIKKSFVPEIVLNNLFKLTKLQSNYSFNMIALV-NNEPKLLNLKACLEVYLKHQIEVVSR 433

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           R  F ++    R  IL+GL I   NID +I II+     +         F+L+E Q  AI
Sbjct: 434 RLKFDLEKDRARAHILEGLKICIENIDAVIKIIKESKTDQEAQSKLSQAFNLSEIQTKAI 493

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++++L  L  L   ++  EL+ +         +L       N I  E++E+K  +  +  
Sbjct: 494 VDMKLGRLTGLAIEKMNEELNEVHERIANYIKILGDHNLLINLIIEELQEIKNAYGDA-- 551

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+          +   + +I K  I + ++N G+I+          +   V +S  
Sbjct: 552 ---RRSDI--NWDELSSIDNEDLIPKRDIVITLTNNGYIKRLDIEEYREQRRGGVGVSTT 606

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID-LNHNQ 600
              + D+++  L A+T   +L+ +   K Y +    +  G    +   I  +I  +  N+
Sbjct: 607 KTYKDDAIQDILVANTHTDLLIFTDLAKVYRIRGHEVPVGTKQSKGIPIVNVIPSIQKNE 666

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKV 656
            ++       Y     LL  + KG           +  R GK    +   ++K+   + V
Sbjct: 667 KVIKILPINEYKQNEYLLTATKKGIVKKTPTILFESINRNGKIAFAIRDDDDKLIDALIV 726

Query: 657 -TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
              D + +   N K+  F  ++I  M R   GV+     D   + V      +G      
Sbjct: 727 KDEDEIFIAASNNKICRFDSNEIRSMGRMAYGVKGIKIDDVEDNVVSVSSSNQGKYIFSL 786

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +     +    +RG  G        +SGK + +
Sbjct: 787 GKEGYGKLTLAAMFRKTRRGASGVYSLNE-EKSGKLIYA 824



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 63/155 (40%), Gaps = 6/155 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D I + +++ K     +  + S       ++ +   +   ++V+    +    +  +  +
Sbjct: 730 DEIFIAASNNKICRFDSNEIRSMGRMAYGVKGIKIDDVEDNVVSVSSSNQGKYIFSLGKE 789

Query: 621 GNAFIVEESEIIANTRKGKTFL-KVSSEE--KMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           G   +   + +   TR+G + +  ++ E+  K+     V G + + V+  +   + FS+ 
Sbjct: 790 GYGKLT-LAAMFRKTRRGASGVYSLNEEKSGKLIYAATVHGVEDLIVLTSDGVAIRFSLK 848

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            +    R  KGV+L + K    + V   KI +   
Sbjct: 849 DVAITGRNTKGVKLVNLKGRTTNIVAATKILDDDL 883


>gi|478849|pir||S30571 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Haloferax sp
 gi|43485|emb|CAA42740.1| DNA gyrase A subunit [Haloferax sp. Aa2.2]
          Length = 858

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 240/776 (30%), Positives = 387/776 (49%), Gaps = 32/776 (4%)

Query: 1   MGVDNIS--NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  D          +   VK   +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI+
Sbjct: 1   MSSDAPDSFEPGAGIAAEVKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM + G+   ++ +KS+ IVGE +G  HPHGD ++YD+L R+A+ F  RYPL+ GQGNF
Sbjct: 61  YAMHQAGVTSNSSHRKSSSIVGETMGDYHPHGDSAIYDTLARMAEDFSMRYPLVDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGD  AA RYTEARM+ +AE +L  +D+D VDF+  Y++   EP V PS FPNLL N
Sbjct: 121 GSVDGDPPAAMRYTEARMSPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+SGIAVGM+T+IP HN+ E+ +AA+ LI+NP+ ++  L+E+I GPDFPTG  IV  R +
Sbjct: 181 GSSGIAVGMSTNIPPHNLGEVVDAAVELIENPDATVADLMEHIKGPDFPTGANIVA-RNA 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           + ++Y+ GRG  RVRA + V E       IV+ E+PYQ  K+RLIE+IA+ +   +I  +
Sbjct: 240 VHKAYKTGRGRVRVRADYDVFEEE---GRIVINELPYQENKARLIERIADDVNEGKIEGI 296

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            DIRDES  D   V+    R    +++  +  + + +E+ F +    L     PQV+ L 
Sbjct: 297 RDIRDESERDGIRVVIELKRGAMAEVVK-NQLLDNHLESTFGVINLALVD-GQPQVLTLK 354

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--- 415
             L+ +L HRR+V+ RRS + +   + R  IL G L A  NID+++  IRN +       
Sbjct: 355 ETLEHYLDHRRDVVRRRSEYELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKA 414

Query: 416 ------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                         +  F  +E Q + I++++L SL  +E  +I++E +++ A  E++++
Sbjct: 415 ALRGEVEVEVDGEPLPTFDFSEEQANHIVSMQLGSLTSMEAAEIEAEYEDVQATIERLET 474

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L    +    I  E+ ++K+ ++          T               ++  E   + 
Sbjct: 475 ILGDQSELDAVIESELLDIKDEYADDRRTSFVANTGEVTRADLIPEEDVVVVVSEDDYIK 534

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                  R+       +     KEGD++      +T D +L  +  G+ Y L A  +   
Sbjct: 535 RMPVSRFRAQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQVYQLKAYQVPEM 594

Query: 584 RG--HGEAIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRK 637
                G++   L+D +  ++I      D        L +V+  G                
Sbjct: 595 SRTARGKSAVNLLDFDDGEEITAVVNCDDLEDIEGYLTMVTRNGYIKRTGTDRFQNILST 654

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-D 694
           G    K+   +++  V    G+  + +  E    + F  D++  M R  +GVR    + D
Sbjct: 655 GIIATKLDEGDELVDVEVTDGETDLVIGTERGMSIRFDEDEVRAMGRSARGVRGIKLEGD 714

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             ++ V           +      Y +  +        R G G +  K   R+G  
Sbjct: 715 DVVAGVAAIDEAHHSWILTVTENGYGKRTDLDAYRTQSRNGKGLIDIKANERNGPV 770



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 7/120 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           I L  +  +      D      +L V+  G     +       +R GK  + + + E+  
Sbjct: 709 IKLEGDDVVAGVAAIDEAHHSWILTVTENGYGKRTDLDAYRTQSRNGKGLIDIKANERNG 768

Query: 652 LVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
            V  +     GDH+ V+ +  ++L   ++ I  + R   G+ +    +G     +     
Sbjct: 769 PVCAINTVGEGDHLVVMSDEGQILRTPVEDISTVGRNTMGIIVMDLDEGDAVASVDVIPA 828


>gi|115499625|dbj|BAF33487.1| Type II Topoisomerase IV, subunit A [Listonella anguillarum]
          Length = 758

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 282/752 (37%), Positives = 450/752 (59%), Gaps = 25/752 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITFDGVEKLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNPE  +  +++Y+ GPD+PT   I+  R  I + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPEAQLHDVMQYVQGPDYPTEAEIISPRIEIEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        +V+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   P+V  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMSHLFASTDLEKSFRVNLNMIGLNNRPEVKGLVTILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED+PK V+++RF ++ 
Sbjct: 357 EFRRTTVRRRLQYRLDKVMARLHILEGLLIAYLNIDEVIEIIRTEDEPKAVLMARFGISA 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELAKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + + KA  ++ ++  E ITVV+S +GW+R  K H VD  +L +
Sbjct: 477 YGD-----DRRSPLIERAES-KALTERDLVPSEAITVVLSEKGWVRHAKGHDVDCQSLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +  +++ L +DG++Y+L A +L S R  GE I   +++     I   
Sbjct: 531 KSGDQYLAHACGKSNQQVVFLGSDGRSYSLEAHSLPSARTQGEPITGRLNITEGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVA 662
            + +     LV S  G  F+ +  E+++  R GK  + +    ++      V +  D + 
Sbjct: 591 VMGEEEQLWLVGSDAGYGFVCKGGELLSKNRSGKALVNLPENSEVMTPQASVNLESDDIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F I  +P++++GKG ++ +        ++  +S +I       +T + + 
Sbjct: 651 AITNQGRMLLFPIKDLPQLTKGKGNKIINIPAAKSKEREEFVSHLISLPQGAAIT-LYAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R      +DL  + G+RG  GSL+P+G  R 
Sbjct: 710 KRKLGLKASDLENFRGERGRRGSLLPRGLQRV 741


>gi|15803563|ref|NP_289596.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 EDL933]
 gi|15833157|ref|NP_311930.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130915|ref|NP_417491.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24114324|ref|NP_708834.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 301]
 gi|30064372|ref|NP_838543.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 2457T]
 gi|89109789|ref|AP_003569.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           W3110]
 gi|110806916|ref|YP_690436.1| DNA topoisomerase IV subunit A [Shigella flexneri 5 str. 8401]
 gi|157158561|ref|YP_001464484.1| DNA topoisomerase IV subunit A [Escherichia coli E24377A]
 gi|157162495|ref|YP_001459813.1| DNA topoisomerase IV subunit A [Escherichia coli HS]
 gi|168747473|ref|ZP_02772495.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753987|ref|ZP_02778994.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760178|ref|ZP_02785185.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767040|ref|ZP_02792047.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773326|ref|ZP_02798333.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781893|ref|ZP_02806900.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785891|ref|ZP_02810898.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168797609|ref|ZP_02822616.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|170018727|ref|YP_001723681.1| DNA topoisomerase IV subunit A [Escherichia coli ATCC 8739]
 gi|170082562|ref|YP_001731882.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188494635|ref|ZP_03001905.1| DNA topoisomerase IV, A subunit [Escherichia coli 53638]
 gi|193062029|ref|ZP_03043125.1| DNA topoisomerase IV, A subunit [Escherichia coli E22]
 gi|193067270|ref|ZP_03048238.1| DNA topoisomerase IV, A subunit [Escherichia coli E110019]
 gi|194426504|ref|ZP_03059059.1| DNA topoisomerase IV, A subunit [Escherichia coli B171]
 gi|194431598|ref|ZP_03063889.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1012]
 gi|194436767|ref|ZP_03068867.1| DNA topoisomerase IV, A subunit [Escherichia coli 101-1]
 gi|195937163|ref|ZP_03082545.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806097|ref|ZP_03248434.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812217|ref|ZP_03253546.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818498|ref|ZP_03258818.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398989|ref|YP_002272495.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920494|ref|YP_002294578.1| DNA topoisomerase IV subunit A [Escherichia coli SE11]
 gi|217326967|ref|ZP_03443050.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555592|ref|YP_002388505.1| DNA topoisomerase IV subunit A [Escherichia coli IAI1]
 gi|218696728|ref|YP_002404395.1| DNA topoisomerase IV subunit A [Escherichia coli 55989]
 gi|218701791|ref|YP_002409420.1| DNA topoisomerase IV subunit A [Escherichia coli IAI39]
 gi|218706646|ref|YP_002414165.1| DNA topoisomerase IV subunit A [Escherichia coli UMN026]
 gi|238902132|ref|YP_002927928.1| DNA topoisomerase IV, subunit A [Escherichia coli BW2952]
 gi|254794973|ref|YP_003079810.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019060|ref|ZP_05432925.1| DNA topoisomerase IV subunit A [Shigella sp. D9]
 gi|256024399|ref|ZP_05438264.1| DNA topoisomerase IV subunit A [Escherichia sp. 4_1_40B]
 gi|260845776|ref|YP_003223554.1| DNA topoisomerase IV subunit A [Escherichia coli O103:H2 str.
           12009]
 gi|260869776|ref|YP_003236178.1| DNA topoisomerase IV subunit A [Escherichia coli O111:H- str.
           11128]
 gi|261228033|ref|ZP_05942314.1| DNA topoisomerase IV, subunit A [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254889|ref|ZP_05947422.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284399|ref|YP_003501217.1| DNA topoisomerase 4 subunit A [Escherichia coli O55:H7 str. CB9615]
 gi|293406635|ref|ZP_06650561.1| DNA topoisomerase IV subunit A [Escherichia coli FVEC1412]
 gi|293416461|ref|ZP_06659100.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|293449364|ref|ZP_06663785.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|298382374|ref|ZP_06991971.1| DNA topoisomerase 4 subunit A [Escherichia coli FVEC1302]
 gi|300821604|ref|ZP_07101750.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 119-7]
 gi|300901399|ref|ZP_07119485.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 198-1]
 gi|300916873|ref|ZP_07133576.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 115-1]
 gi|300923678|ref|ZP_07139705.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 182-1]
 gi|300931905|ref|ZP_07147202.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 187-1]
 gi|301325632|ref|ZP_07219096.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 78-1]
 gi|307139708|ref|ZP_07499064.1| DNA topoisomerase IV subunit A [Escherichia coli H736]
 gi|307310350|ref|ZP_07589998.1| DNA topoisomerase IV, A subunit [Escherichia coli W]
 gi|312972719|ref|ZP_07786892.1| DNA topoisomerase IV, A subunit [Escherichia coli 1827-70]
 gi|331643719|ref|ZP_08344850.1| DNA topoisomerase IV, A subunit [Escherichia coli H736]
 gi|331654626|ref|ZP_08355626.1| DNA topoisomerase IV, A subunit [Escherichia coli M718]
 gi|331669960|ref|ZP_08370805.1| DNA topoisomerase IV, A subunit [Escherichia coli TA271]
 gi|331679092|ref|ZP_08379764.1| DNA topoisomerase IV, A subunit [Escherichia coli H591]
 gi|332280161|ref|ZP_08392574.1| topoisomerase IV subunit [Shigella sp. D9]
 gi|84028840|sp|P0AFI3|PARC_ECO57 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|84028841|sp|P0AFI2|PARC_ECOLI RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|84028842|sp|P0AFI4|PARC_SHIFL RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|12517588|gb|AAG58155.1|AE005531_8 DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           EDL933]
 gi|882549|gb|AAA69187.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789396|gb|AAC76055.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13363375|dbj|BAB37326.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           Sakai]
 gi|24053483|gb|AAN44541.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 301]
 gi|30042629|gb|AAP18353.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 2457T]
 gi|85675822|dbj|BAE77075.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K12 substr.
           W3110]
 gi|110616464|gb|ABF05131.1| DNA topoisomerase IV subunit A [Shigella flexneri 5 str. 8401]
 gi|157068175|gb|ABV07430.1| DNA topoisomerase IV, A subunit [Escherichia coli HS]
 gi|157080591|gb|ABV20299.1| DNA topoisomerase IV, A subunit [Escherichia coli E24377A]
 gi|169753655|gb|ACA76354.1| DNA topoisomerase IV, A subunit [Escherichia coli ATCC 8739]
 gi|169890397|gb|ACB04104.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187770984|gb|EDU34828.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017906|gb|EDU56028.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489834|gb|EDU64937.1| DNA topoisomerase IV, A subunit [Escherichia coli 53638]
 gi|189000605|gb|EDU69591.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358753|gb|EDU77172.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363711|gb|EDU82130.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369288|gb|EDU87704.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373963|gb|EDU92379.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189379712|gb|EDU98128.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|192932249|gb|EDV84847.1| DNA topoisomerase IV, A subunit [Escherichia coli E22]
 gi|192959227|gb|EDV89662.1| DNA topoisomerase IV, A subunit [Escherichia coli E110019]
 gi|194415812|gb|EDX32079.1| DNA topoisomerase IV, A subunit [Escherichia coli B171]
 gi|194419954|gb|EDX36032.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1012]
 gi|194424249|gb|EDX40236.1| DNA topoisomerase IV, A subunit [Escherichia coli 101-1]
 gi|208725898|gb|EDZ75499.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733494|gb|EDZ82181.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738621|gb|EDZ86303.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160389|gb|ACI37822.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209759598|gb|ACI78111.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759600|gb|ACI78112.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759602|gb|ACI78113.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759604|gb|ACI78114.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759606|gb|ACI78115.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209913753|dbj|BAG78827.1| DNA topoisomerase IV subunit A [Escherichia coli SE11]
 gi|217319334|gb|EEC27759.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218353460|emb|CAU99553.1| DNA topoisomerase IV, subunit A [Escherichia coli 55989]
 gi|218362360|emb|CAQ99983.1| DNA topoisomerase IV, subunit A [Escherichia coli IAI1]
 gi|218371777|emb|CAR19630.1| DNA topoisomerase IV, subunit A [Escherichia coli IAI39]
 gi|218433743|emb|CAR14660.1| DNA topoisomerase IV, subunit A [Escherichia coli UMN026]
 gi|238860846|gb|ACR62844.1| DNA topoisomerase IV, subunit A [Escherichia coli BW2952]
 gi|254594373|gb|ACT73734.1| DNA topoisomerase IV, subunit A [Escherichia coli O157:H7 str.
           TW14359]
 gi|257760923|dbj|BAI32420.1| DNA topoisomerase IV subunit A [Escherichia coli O103:H2 str.
           12009]
 gi|257766132|dbj|BAI37627.1| DNA topoisomerase IV subunit A [Escherichia coli O111:H- str.
           11128]
 gi|260447945|gb|ACX38367.1| DNA topoisomerase IV, A subunit [Escherichia coli DH1]
 gi|290764272|gb|ADD58233.1| DNA topoisomerase 4 subunit A [Escherichia coli O55:H7 str. CB9615]
 gi|291322454|gb|EFE61883.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|291426641|gb|EFE99673.1| DNA topoisomerase IV subunit A [Escherichia coli FVEC1412]
 gi|291431817|gb|EFF04800.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|298277514|gb|EFI19030.1| DNA topoisomerase 4 subunit A [Escherichia coli FVEC1302]
 gi|300355171|gb|EFJ71041.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 198-1]
 gi|300415843|gb|EFJ99153.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 115-1]
 gi|300420045|gb|EFK03356.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 182-1]
 gi|300460328|gb|EFK23821.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 187-1]
 gi|300525742|gb|EFK46811.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 119-7]
 gi|300847550|gb|EFK75310.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 78-1]
 gi|306909245|gb|EFN39740.1| DNA topoisomerase IV, A subunit [Escherichia coli W]
 gi|309703450|emb|CBJ02790.1| topoisomerase IV subunit A [Escherichia coli ETEC H10407]
 gi|310332661|gb|EFP99874.1| DNA topoisomerase IV, A subunit [Escherichia coli 1827-70]
 gi|313648136|gb|EFS12582.1| DNA topoisomerase IV, A subunit [Shigella flexneri 2a str. 2457T]
 gi|315062333|gb|ADT76660.1| DNA topoisomerase IV, subunit A [Escherichia coli W]
 gi|315137612|dbj|BAJ44771.1| DNA topoisomerase 4 subunit A [Escherichia coli DH1]
 gi|315615025|gb|EFU95663.1| DNA topoisomerase IV, A subunit [Escherichia coli 3431]
 gi|320180953|gb|EFW55874.1| Topoisomerase IV subunit A [Shigella boydii ATCC 9905]
 gi|320189372|gb|EFW64031.1| Topoisomerase IV subunit A [Escherichia coli O157:H7 str. EC1212]
 gi|320201934|gb|EFW76509.1| Topoisomerase IV subunit A [Escherichia coli EC4100B]
 gi|320640095|gb|EFX09667.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           G5101]
 gi|320645392|gb|EFX14401.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H- str.
           493-89]
 gi|320650704|gb|EFX19161.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H- str. H
           2687]
 gi|320656399|gb|EFX24306.1| DNA topoisomerase IV subunit A [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661771|gb|EFX29179.1| DNA topoisomerase IV subunit A [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666923|gb|EFX33899.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323163073|gb|EFZ48906.1| DNA topoisomerase IV, A subunit [Escherichia coli E128010]
 gi|323173738|gb|EFZ59367.1| DNA topoisomerase IV, A subunit [Escherichia coli LT-68]
 gi|323178726|gb|EFZ64302.1| DNA topoisomerase IV, A subunit [Escherichia coli 1180]
 gi|323377081|gb|ADX49349.1| DNA topoisomerase IV, A subunit [Escherichia coli KO11]
 gi|323935979|gb|EGB32274.1| DNA topoisomerase IV [Escherichia coli E1520]
 gi|323941882|gb|EGB38061.1| DNA topoisomerase IV [Escherichia coli E482]
 gi|323946736|gb|EGB42756.1| DNA topoisomerase IV [Escherichia coli H120]
 gi|323960933|gb|EGB56552.1| DNA topoisomerase IV [Escherichia coli H489]
 gi|323978906|gb|EGB73986.1| DNA topoisomerase IV [Escherichia coli TW10509]
 gi|324119632|gb|EGC13513.1| DNA topoisomerase IV [Escherichia coli E1167]
 gi|326337726|gb|EGD61560.1| Topoisomerase IV subunit A [Escherichia coli O157:H7 str. 1125]
 gi|331037190|gb|EGI09414.1| DNA topoisomerase IV, A subunit [Escherichia coli H736]
 gi|331048008|gb|EGI20085.1| DNA topoisomerase IV, A subunit [Escherichia coli M718]
 gi|331062873|gb|EGI34787.1| DNA topoisomerase IV, A subunit [Escherichia coli TA271]
 gi|331073157|gb|EGI44480.1| DNA topoisomerase IV, A subunit [Escherichia coli H591]
 gi|332087279|gb|EGI92411.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 155-74]
 gi|332102513|gb|EGJ05859.1| topoisomerase IV subunit [Shigella sp. D9]
 gi|332344976|gb|AEE58310.1| DNA topoisomerase IV, A subunit ParC [Escherichia coli UMNK88]
 gi|332752693|gb|EGJ83078.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-671]
 gi|332753078|gb|EGJ83462.1| DNA topoisomerase IV, A subunit [Shigella flexneri 4343-70]
 gi|332754396|gb|EGJ84762.1| DNA topoisomerase IV, A subunit [Shigella flexneri 2747-71]
 gi|332765499|gb|EGJ95717.1| DNA topoisomerase IV, A subunit [Shigella flexneri 2930-71]
 gi|332999773|gb|EGK19357.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-272]
 gi|333000251|gb|EGK19834.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-218]
 gi|333014825|gb|EGK34170.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-304]
 gi|333015641|gb|EGK34980.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-227]
          Length = 752

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|304396840|ref|ZP_07378720.1| DNA topoisomerase IV, A subunit [Pantoea sp. aB]
 gi|304355636|gb|EFM20003.1| DNA topoisomerase IV, A subunit [Pantoea sp. aB]
          Length = 757

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 271/752 (36%), Positives = 443/752 (58%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L ++  + ++L    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   SELTQDGAERLALHTFTEDAYLKYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AEL+L  + +  V+F+  ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLGELGQGTVEFQPNFDGTLQEPKILPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA+ALID P+ ++E LL+ + GPD+PT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNLREVAQAAIALIDAPKTTLEALLDIVQGPDYPTEAEIITPRDEIRKMYQTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R RA W  EE        V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +
Sbjct: 242 SIRQRAVWKKEEGEA-----VITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRVDLDQIMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLHEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R+  + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E 
Sbjct: 357 FRRDTVKRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIDIIRTEDEPKPVLMSRFGISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q ++IL L+LR L KLEE +I++E  +L  E++++ + L S ++    +  E++     +
Sbjct: 417 QAESILELKLRHLAKLEEVKIRAEQADLEKERDQLQATLASERKMNTLLKKELQADSASY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A   +  +  +  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLREREEAKALSETEL-VPSEPVTIVLSQMGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS   A    +   +  + + G++YTL   +L S RG GE +   +       +    
Sbjct: 531 AGDSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVVEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVV 664
           +     +LL+ S  G  FI   S++++  R GK  L +    ++   + V    D +  +
Sbjct: 591 MEPDDQRLLMASDAGYGFICTFSDLVSRNRAGKALLALPENARVMTPMAVHHEDDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKICEGLTW-IDSAGRS 718
            +  ++L+F + ++P+MS+GKG ++ S        G         +  G    +    R 
Sbjct: 651 TQAGRMLMFPVGELPQMSKGKGNKIISIPSAEAAAGQDKLAWLMILPPGSAITLHVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 +L  +   RG  G+L+P+G  +  + 
Sbjct: 711 MLLRSEELQKFRADRGRRGTLLPRGLQKIDRV 742


>gi|83280995|dbj|BAE53572.1| gyrase alpha subunit [Thermoplasma acidophilum]
          Length = 793

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 221/742 (29%), Positives = 384/742 (51%), Gaps = 16/742 (2%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +  ++   + + YL YA+S I  RAIPD+RDG KPV RR++++M E+G+     +KK AR
Sbjct: 2   EKRAVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCAR 61

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVGE +GK HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEAR+T
Sbjct: 62  IVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLT 121

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           Q+AE ++  +DE+ V FR  ++   SEP   PSK PNLL NG+SGIAVGMAT++  HN+ 
Sbjct: 122 QIAEDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNLT 181

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           EIC+A L  +D+ +  ++ LL+Y+ GPDFP GGI+   ++ ++E+YR GRG   V+    
Sbjct: 182 EICDAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKD-LIEAYRTGRGKVIVQGEVD 240

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
             E       +++  IPY V K+ L++ IA+L   + I  + DI+DES  +   ++    
Sbjct: 241 ATEDR----RLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGISIVIKVR 296

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 L++  ++  + +E+   +   VL  G  P++M L  ++  ++ HR +V+ RRS 
Sbjct: 297 DDDIKPLVLNQLYEHTALESSIGIINLVLV-GNQPKLMNLKDLIDSFIDHRLDVILRRSQ 355

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNL 434
           FR++    R+++L G+L A  +ID ++ I+++          + + F L + Q+ AIL +
Sbjct: 356 FRLERKKERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKLRNEFDLNDRQIKAILEM 415

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L   E+  ++SE+  L  E + ++ ++ S  ++ ++   EI E+++ +        
Sbjct: 416 RLQRLVNTEQASVRSEIAQLQTEIKDLEEIILSEDRRIDEFKKEITEIQKKYGDKRRSRI 475

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           +     E +  D    ++++I      +V   +      +           K  DS+K  
Sbjct: 476 KFRGITERTMEDLIPNEESLIMLSYGGLVKRVQADEYRSQRRGGKGVNTSMKTSDSIKSM 535

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAFVYDSTC 612
           +H  + D +   +  G+ +   A  +          +    + L   + +          
Sbjct: 536 IHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTEIMKAPPEK 595

Query: 613 --KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
              L++V+  G+        +  +   G   + +  ++++  V    GD ++ V+    K
Sbjct: 596 GYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDDELVSVSYTAGDKNIFVLSSKGK 655

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
             +F+  +I E  R   GVR     +G    +  F +      +  + + Y +  N    
Sbjct: 656 ASVFNTSEIRETGRTSMGVRSMRLNEGDTI-LTAFVVNSDEDILSISEKGYGKRTNISEF 714

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
            +  RG  G +V +   R+G+ 
Sbjct: 715 PIHHRGSSGVMVYRDTERTGRV 736



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 62/176 (35%), Gaps = 6/176 (3%)

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
             S S  L  +  ++ D L    +      I +LS+ GKA       +         ++ 
Sbjct: 617 FDSKSSGLKIITLEDDDELVSVSYTAGDKNIFVLSSKGKASVFNTSEIRETGRTSMGVRS 676

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +  LN    I+TAFV +S   +L +S KG       SE   + R     +     E+   
Sbjct: 677 MR-LNEGDTILTAFVVNSDEDILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTERTGR 735

Query: 653 VVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           V         D V +V  N K +     +IPE SR   GV+L              
Sbjct: 736 VSHAIPVRDEDEVILVSMNEKTIRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAV 791


>gi|90424083|ref|YP_532453.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18]
 gi|90106097|gb|ABD88134.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18]
          Length = 927

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 265/863 (30%), Positives = 407/863 (47%), Gaps = 122/863 (14%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
             DN         + ++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++AM
Sbjct: 4   TDDNKPGEPPAPSD-IRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAM 62

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E G ++   ++KSAR VG+VIGK HPHGDQSVYD++VR+AQ F  R PLI GQGNFG++
Sbjct: 63  YENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSV 122

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGDSAAA RYTE+R+T++A+L+L  +D+D VD++D Y+    EP V P+KFPNLL NG  
Sbjct: 123 DGDSAAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAG 182

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A +ALID+P +SI+ L + + GPDFPTGGII+  R  I  
Sbjct: 183 GIAVGMATNIPPHNLGEVIDACVALIDDPALSIDDLTKIVPGPDFPTGGIIL-GRAGIRL 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R +  +E   +    I+++EIPYQV K+ ++E+IAEL+  K+I  + D+
Sbjct: 242 AYHTGRGSIVMRGKVAIEPTRKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDL 301

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    R   PD+++  ++  + ++T F  NM  L     PQ+M L  +L
Sbjct: 302 RDESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALD-AGRPQLMNLKDLL 360

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + ++A R +V+ RR+ F +     R  +L GL IA  NIDEII +IR    P     +  
Sbjct: 361 RLFVAFREQVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEIIRVIRTSPDPATARDTLM 420

Query: 422 S-----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELD 452
           +                             L+  Q  AIL+LRL  L  L   +I  ELD
Sbjct: 421 ARDWEAKDVAAMITLIDDPRHRLNADGTARLSFEQAKAILDLRLARLTALGREEISEELD 480

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            L  E      +L S  +    I  E+  VK  F+       R+TT  E          +
Sbjct: 481 KLAIEIADYLEILRSRARVQTIIKEELAAVKAEFATP-----RKTTIIEQEGE---VEDE 532

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I++E + V +S+ G+++          +      S +  +E D +     A T   +L
Sbjct: 533 DLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVL 592

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G+ Y      L      G G+A+  ++ L   + I T               ++ 
Sbjct: 593 FFSSRGQVYKEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDESSWAELDVMF 652

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            +++G     + S+ +   R G   +K+   E +  V   T  D V +     + + F++
Sbjct: 653 ATTRGTVRRNKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTDRDDVLLTAAGGQCIRFAV 712

Query: 676 DQIPE-MSRG----KGVRL------QSY-------------------------------- 692
             +    SR     +G+ L       S                                 
Sbjct: 713 TDVRVFQSRASMGVRGMALANGDQVISLTILRHFDANPAERSTYLKQSGAIRRAATGEEA 772

Query: 693 ---------------KDGGISDVICFKIC-------EGLTWIDSAGRSYNRSENDLLGWL 730
                          +   +  +                  +  +   + +  +      
Sbjct: 773 EAVEGSELAAEVADAEPEEVDAIASLSPDRYAEMSANEQFVLTLSENGFGKRTSSFEYRT 832

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             RGG G +      R+GK ++S
Sbjct: 833 TGRGGKGIVAMAVNARNGKLVAS 855



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKT----FLKVSSEEKMKLVVKVTGDHVAVVG 665
           +   +L +S  G        E     R GK      +   + + +        D + +V 
Sbjct: 809 NEQFVLTLSENGFGKRTSSFEYRTTGRGGKGIVAMAVNARNGKLVASFPVEEEDQIMLVT 868

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +  +L+   +  I  + R  +GV + +  +      +
Sbjct: 869 DKGQLIRCPVGGIRIVGRSTQGVTVFNTAEDEHVVSV 905



 Score = 46.7 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 76/275 (27%), Gaps = 19/275 (6%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             + G R TT   +   + +  +  ++       V         +      + A+   EG
Sbjct: 625 PLEQGERITTIMPLPEDESSWAELDVMFATTRGTVR-RNKLSDFVDVRRSGIIAMKLDEG 683

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA--- 605
           +++         D +LL +  G+       ++   +         + L +   +++    
Sbjct: 684 EAIVDVQICTDRDDVLLTAAGGQCIRFAVTDVRVFQSRASMGVRGMALANGDQVISLTIL 743

Query: 606 --FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EEKMKLVVKVTGDH- 660
             F  +   +   +   G        E        +   +V+    E++  +  ++ D  
Sbjct: 744 RHFDANPAERSTYLKQSGAIRRAATGEEAEAVEGSELAAEVADAEPEEVDAIASLSPDRY 803

Query: 661 ---------VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
                    V  + EN      S  +     R GKG+   +        V  F + E   
Sbjct: 804 AEMSANEQFVLTLSENGFGKRTSSFEYRTTGRGGKGIVAMAVNARNGKLVASFPVEEEDQ 863

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +    +            +  R   G  V     
Sbjct: 864 IMLVTDKGQLIRCPVGGIRIVGRSTQGVTVFNTAE 898


>gi|331684662|ref|ZP_08385254.1| DNA topoisomerase IV, A subunit [Escherichia coli H299]
 gi|331078277|gb|EGI49483.1| DNA topoisomerase IV, A subunit [Escherichia coli H299]
          Length = 752

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 IRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 476 -----RRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|253772143|ref|YP_003034974.1| DNA topoisomerase IV subunit A [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162968|ref|YP_003046076.1| DNA topoisomerase IV subunit A [Escherichia coli B str. REL606]
 gi|242378571|emb|CAQ33358.1| topoisomerase IV subunit A, subunit of dimer of topoisomerase IV
           subunit A and topoisomerase IV [Escherichia coli
           BL21(DE3)]
 gi|253323187|gb|ACT27789.1| DNA topoisomerase IV, A subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974869|gb|ACT40540.1| DNA topoisomerase IV subunit A [Escherichia coli B str. REL606]
 gi|253979025|gb|ACT44695.1| DNA topoisomerase IV subunit A [Escherichia coli BL21(DE3)]
          Length = 752

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++     +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAHAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|26249591|ref|NP_755631.1| DNA topoisomerase IV subunit A [Escherichia coli CFT073]
 gi|110643262|ref|YP_670992.1| DNA topoisomerase IV subunit A [Escherichia coli 536]
 gi|227887731|ref|ZP_04005536.1| DNA topoisomerase IV subunit A [Escherichia coli 83972]
 gi|293412396|ref|ZP_06655119.1| DNA topoisomerase IV [Escherichia coli B354]
 gi|300973292|ref|ZP_07172131.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 45-1]
 gi|301020007|ref|ZP_07184139.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 196-1]
 gi|301048157|ref|ZP_07195194.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 185-1]
 gi|331648814|ref|ZP_08349902.1| DNA topoisomerase IV, A subunit [Escherichia coli M605]
 gi|26109999|gb|AAN82204.1|AE016766_292 Topoisomerase IV subunit A [Escherichia coli CFT073]
 gi|110344854|gb|ABG71091.1| topoisomerase IV subunit A [Escherichia coli 536]
 gi|227835127|gb|EEJ45593.1| DNA topoisomerase IV subunit A [Escherichia coli 83972]
 gi|284923042|emb|CBG36135.1| topoisomerase IV subunit A [Escherichia coli 042]
 gi|291469167|gb|EFF11658.1| DNA topoisomerase IV [Escherichia coli B354]
 gi|299881964|gb|EFI90175.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 196-1]
 gi|300299993|gb|EFJ56378.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 185-1]
 gi|300410872|gb|EFJ94410.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 45-1]
 gi|307555117|gb|ADN47892.1| topoisomerase IV subunit A [Escherichia coli ABU 83972]
 gi|315295061|gb|EFU54398.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 153-1]
 gi|330909081|gb|EGH37595.1| topoisomerase 4 subunit A [Escherichia coli AA86]
 gi|331042561|gb|EGI14703.1| DNA topoisomerase IV, A subunit [Escherichia coli M605]
          Length = 752

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 476 -----RRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|82545280|ref|YP_409227.1| DNA topoisomerase IV subunit A [Shigella boydii Sb227]
 gi|81246691|gb|ABB67399.1| DNA topoisomerase IV subunit A [Shigella boydii Sb227]
 gi|320176211|gb|EFW51275.1| Topoisomerase IV subunit A [Shigella dysenteriae CDC 74-1112]
 gi|332092194|gb|EGI97272.1| DNA topoisomerase IV, A subunit [Shigella boydii 3594-74]
          Length = 752

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|84497176|ref|ZP_00995998.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649]
 gi|84382064|gb|EAP97946.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649]
          Length = 921

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 225/772 (29%), Positives = 386/772 (50%), Gaps = 37/772 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + +    + V+ + L   ++  Y+ YA+S I  RA+PD+RDG KPVHRR+I+AM + G  
Sbjct: 27  DRSPGETDRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRVIYAMYDGGYR 86

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               F K +R+VGEV+G+ HPHGD S+YD+LVRL Q +  RYPL+ GQGNFG+   D AA
Sbjct: 87  PDRGFNKCSRVVGEVMGQYHPHGDSSIYDALVRLVQDWSLRYPLVQGQGNFGSPGDDPAA 146

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM  ++  +++ +D+  VDF   Y+ +  EP V PS+FPNLL NG+SGIAVGM
Sbjct: 147 APRYTECRMAPLSMELVRDIDKKTVDFAPNYDGKTMEPKVLPSRFPNLLVNGSSGIAVGM 206

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRESIVESY 243
           AT IP HN++E+  AAL ++++P+ + +++    +  I GPDFPTG  ++  R+ I ++Y
Sbjct: 207 ATQIPPHNLREVSAAALWVLEHPDATRDEMLDAVMARIQGPDFPTGA-LIMGRKGIEDAY 265

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG   +RA   VEE+ +G  C+VV+E+PYQV    L +KIAE +   R+  + DIRD
Sbjct: 266 RTGRGSIIMRAVVEVEEI-QGRQCLVVSELPYQVNPDSLAQKIAEHVKDGRLHGIADIRD 324

Query: 304 ESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           E++    + ++    R     +++ +++  + ++T F  NM  L    VP+ +P+D  ++
Sbjct: 325 ETSGRTGQRLVIVLRRDAVAKVVLNNLYKHTQLQTNFGANMLALVD-GVPRTLPIDAFIR 383

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            W+ H+ +V+ RR+++ ++  + R+ IL+GLL A   +DE+IA+IR     +        
Sbjct: 384 HWVDHQIDVIQRRTAYLLKEAEDRIHILRGLLKALDLLDEVIALIRRSPTAEAARDGLID 443

Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + E Q  AIL L+LR L  LE  +I  E D +  E E  + +L   ++Q N ++ E+
Sbjct: 444 LLEIDEIQARAILELQLRRLAALERQKIIDEHDAIQREIEDYEDILAKPERQRNIVSDEL 503

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
             + E +        RR+        D     + +I +E + V I+  G+ +        
Sbjct: 504 GTIVEKYGD-----DRRSII---HGFDGDMSMEDLIPEEDVVVTITRGGYAKRTKVDAYR 555

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--A 589
             K     +     +  D +       +   +L  +  G+ Y   A  L       +   
Sbjct: 556 SQKRGGKGVKGASLRGEDVVAHFFTTTSHHWLLFFTNLGRVYRAKAYELPDASRDSKGQH 615

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  ++    ++ I        Y+ +  L++ +  G       SE  +    G   + +  
Sbjct: 616 VANIMAFQPDEHIAQVLALRNYEISPYLVLATKNGLVKKTRLSEYDSPRTGGLIAVNLRD 675

Query: 647 EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYK-DGGISDVI 701
           E+++      +  D + +V +  + + F  D   +  M R   GV    ++ +  +  + 
Sbjct: 676 EDELVGAGLTSSADDLLLVSKKGQSVRFHADDATLRPMGRSTSGVTGMKFRGEDSLLSMS 735

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +                +        +  R  +G  V K   + G  + +
Sbjct: 736 VIEEGTDPDVFVVFESGLAKRSQASQWNVKGRAILGVTVAKQTEKGGDLVGA 787


>gi|281180065|dbj|BAI56395.1| DNA topoisomerase IV subunit A [Escherichia coli SE15]
          Length = 752

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S  +  + +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASEHKMNSLLKKELQADAQAYGDE 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 476 -----RRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|90580746|ref|ZP_01236549.1| DNA topoisomerase IV subunit A [Vibrio angustum S14]
 gi|90438014|gb|EAS63202.1| DNA topoisomerase IV subunit A [Vibrio angustum S14]
          Length = 758

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 275/754 (36%), Positives = 440/754 (58%), Gaps = 25/754 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   
Sbjct: 2   TDVSMDGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ +E++L  + +   D+   ++    EP + P++ P++L NG +GIAVGMA
Sbjct: 122 MRYTESRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  AA+ +I+NP+  ++ L+E++ GPD+PT   I+ S+  + + Y+ GRG
Sbjct: 182 TDIPPHNAREVANAAVHMIENPKADLDALMEFVQGPDYPTEAEIITSKADLKKVYKSGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E        IV+T +P+Q   ++L+E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SIKMRAVWHKENGD-----IVITALPHQTSGAKLLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIV+ P++  +D + LM  +F  +D+E  F  N+N+L +   PQV  L  I+ EWL 
Sbjct: 297 NPTRIVIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGLVQIIAEWLE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR  + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIR+ED PK  ++SRF L+  
Sbjct: 357 YRRTTVRRRLQYRLDKVIARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLSAI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L KLEE +I+ E D L  E+E+++ LL S ++    I  EI    E +
Sbjct: 417 QADAILEIKLRQLAKLEEIKIRGEQDELSKEREQLEKLLGSERRLNTLIKKEILADAEKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A KA  ++ +I  E ITVV+S +GWIR  K H VD S L++K
Sbjct: 477 GDE-----RRSPLVEREEA-KALTERDLIPSEAITVVLSEKGWIRHAKGHEVDPSTLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +    + L +DG++Y L + +L S R  GE I   ++L    +I    
Sbjct: 531 SGDSYLAHARGKSNLPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGTNIRQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVAV 663
           + +     L+ S  G  FI + +++++  + GK  L V     +     V  +  D +  
Sbjct: 591 MAEDDQLWLMASDAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADIENDQILA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAG 716
           +    ++L+F I  +P++ +GKG ++ +        ++  +S +      +    + +  
Sbjct: 651 ITNEGRMLLFPIKDLPQLGKGKGNKIINIPSARSKAREEFLSYLTVIS-ADTHVTLYAGK 709

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R      +DL  + G+RG  G+++P+G  R  + 
Sbjct: 710 RKLGLKPSDLDNFRGERGRRGAMLPRGLQRVTRM 743


>gi|297243225|ref|ZP_06927160.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
 gi|296888759|gb|EFH27496.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
          Length = 876

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 226/772 (29%), Positives = 376/772 (48%), Gaps = 28/772 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++   +    VK + L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G 
Sbjct: 33  TDYGLMKGARVKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGY 92

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D A
Sbjct: 93  RPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPA 152

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVG
Sbjct: 153 AAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVG 212

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ +     +D+P+ S E+    L++ I GPDFPTG  I+   + I ++
Sbjct: 213 MATNIPPHNMREVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATIL-GHKGIEQA 271

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  + D+R
Sbjct: 272 YRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMR 330

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  +
Sbjct: 331 DETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFI 389

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---V 418
           + W+ H+ EV+ RR+ +  +  + R  IL+G L A   IDE++A+IR+    +      +
Sbjct: 390 RHWVTHQLEVIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLM 449

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           +   + E Q DAIL ++LR L  LE  +I  E ++L+ +    + +L S ++Q   +  E
Sbjct: 450 NLLDVDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDILASPERQRKIVGDE 509

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+   +           +         A     +       +  +     R+      
Sbjct: 510 LDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGK 569

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y L A  L  G    +   +  L+  
Sbjct: 570 GIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGSRDSKGQHVANLLQF 629

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
              + I        YD    L++ +  G        E  +  + G   +++ +       
Sbjct: 630 APGETIQAVLSIPNYDVAKYLVLATRSGKVKKTALQEYDSPRQGGLIAVRLMANEETGEP 689

Query: 648 -EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG-ISDVI 701
            +++         D + +V +    L F  D   +  M R   GV+   +++G  + D+ 
Sbjct: 690 VDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTAGVQGMRFREGDELLDMD 749

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +      + +        L  R G G    +     G  + +
Sbjct: 750 VVAAETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGA 801


>gi|327251806|gb|EGE63492.1| DNA topoisomerase IV, A subunit [Escherichia coli STEC_7v]
          Length = 752

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNKLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|330807212|ref|YP_004351674.1| DNA topoisomerase IV subunit A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375320|gb|AEA66670.1| DNA topoisomerase IV subunit A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 754

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 272/760 (35%), Positives = 442/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+      + V+  SL    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDILADSLDGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP+V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI--PLLEDIR 302
            GRG  R+RA + VE+       I+VT +P+QV  ++++E+IA ++ AK    P + D+R
Sbjct: 241 TGRGSVRMRAVYHVEDGD-----IIVTALPHQVSGAKVLEQIAAMMQAKPSKAPQVADLR 295

Query: 303 DESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES  +   RIV+ P N  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  +
Sbjct: 296 DESDHENPCRIVIIPVNSRVDHDALMQHLFASTDLESSYRVNINIIGLDGKPQLKNLRAL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL  R + + RR  FR+  ++RR+ +L GLLIAYLN+DE+I IIR E+ PK  +++R
Sbjct: 356 LVEWLEFRVKTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPKASLIAR 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q D IL+ RLR L +LEE ++++E D LL E+ K+ +LL S  +    +  E+ 
Sbjct: 416 FALSEIQADYILDTRLRQLARLEEMKLRAEQDELLKEQAKLQALLGSEAKLKKLVRTELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           +  E +        RR+   E + A KA  +  ++  E +TVV+S +GW+RS K H +D 
Sbjct: 476 KDAETYGD-----DRRSPIVERAEA-KALSEHDLLPNEKVTVVLSEKGWVRSAKGHDIDA 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           + L +K GD  K      +    + + + G++Y++PA  L S RG GE +   +      
Sbjct: 530 TGLSYKAGDGFKALAAGRSNQFAVFVDSTGRSYSVPAHTLPSARGQGEPLTGRLTPPPGA 589

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
                 + D     ++ S  G  F+V+  ++ A  + GK  L + +  K+     V    
Sbjct: 590 TFECVLMPDDDGLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVIAPRPVADRE 649

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLT 710
            + +A V    +LL+F I  +P++ +GKG ++          ++  ++D I         
Sbjct: 650 SNWLASVTTEGRLLVFKISDLPQLGKGKGNKIIGISGERVASREEYVTD-IAVLPEGATL 708

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            + +  R+ +   +DL  + G+RG  G+ +P+GF R    
Sbjct: 709 VLQAGKRTLSLKADDLEHYKGERGRRGNKLPRGFQRVDAL 748


>gi|32491194|ref|NP_871448.1| hypothetical protein WGLp445 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166401|dbj|BAC24591.1| gyrA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 847

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 238/774 (30%), Positives = 381/774 (49%), Gaps = 49/774 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM +MG D+  ++KKSARIVG VIGK
Sbjct: 17  LKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKKMGNDWNKSYKKSARIVGNVIGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE R+++++  IL+
Sbjct: 77  YHPHGDSAVYDAIVRMAQNFSLRYKLIDGQGNFGSVDGDSAAAMRYTEVRLSKISHEILK 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D V++   Y++ +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 137 DLEKDTVNYVSNYDDTEYIPEVMPTKIPNLLLNGSSGIAVGMATNIPPHNIGEIINACLA 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC-VEEVGRG 264
            +DN  I ++ L++++ GPDFPT G I+   + I ++Y  GRG   +RA    + +    
Sbjct: 197 YLDNKNICVKDLMKHLPGPDFPTSG-IIYGIKGIEDAYSTGRGKIYIRANSKIISDNKTK 255

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I++ EIPYQV K RLIEKIA+L+  K+I  +  +RDES  D   ++    R    ++
Sbjct: 256 RESIIIKEIPYQVNKVRLIEKIADLVKEKKIDGISSLRDESDRDGMRIVVEIKRDHIGEI 315

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++ ++ ++  F +NM  L     P+ + L  IL  +L HRR ++ R+++F ++ I 
Sbjct: 316 VLNNLYSMTQLQISFGINMVALCY-GQPKTLSLKKILSYFLYHRRVIITRKTNFELKKIY 374

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------------------- 415
            R+ +L+   IA  NID +I++I+N +  +                              
Sbjct: 375 YRLNMLESFFIALFNIDIVISLIKNSNSIEEAQLKLVSNEWDINNIYSVLNNKKLIHFFS 434

Query: 416 ---------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                       +++ +++ Q  AIL+LRL  L KLE  ++  E  +L+ +  K++ +L 
Sbjct: 435 KKQKINSNSNKKNKYFMSKKQAKAILDLRLNKLMKLENKKLILEYKDLVNKSYKLNKILK 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              +  N I  E+  +K+ ++        +                 +       V    
Sbjct: 495 YPDELTNSIKKELLILKQEYNDKRRTKIIKKPVNINIEDLINQKDVIVTLSHQGYVKYQP 554

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
                +        SA   KE D ++  L A+T D ILL S+ G+ Y +    L      
Sbjct: 555 LKDYEAQHRGGKGKSAASIKEKDFIERFLVANTHDSILLFSSKGRVYWMKIFQLPENSRG 614

Query: 587 G--EAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
              + I  L+ L   + I     +   +    + + ++ G        E       G   
Sbjct: 615 SIGKPIINLLPLESKEYITAILPFRKYEKKLYVFMATASGIVKKTALHEFSRPRSSGIIA 674

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
           + ++S +K+       G     +  E  K++ F  +Q+  M R   GV+  S   G    
Sbjct: 675 VNLNSGDKLIGADLTDGSQEAMLFSEYGKVVRFPENQVRNMGRAASGVKGISLIPGDRV- 733

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           V           +      Y +           R   G +  K   R+GK + +
Sbjct: 734 VSLIIPKNNSPILTVTQYGYGKRTVQSEYPTKSRAIQGVISIKVSKRNGKVVGA 787



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 6/164 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S  + A++   GD L  A     +   +L S  GK    P  N +   G   +    
Sbjct: 666 RPRSSGIIAVNLNSGDKLIGADLTDGSQEAMLFSEYGKVVRFP-ENQVRNMGRAASGVKG 724

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV-SSEEKM 650
           I L     +V+  +  +   +L V+  G      +SE    +R   G   +KV     K+
Sbjct: 725 ISLIPGDRVVSLIIPKNNSPILTVTQYGYGKRTVQSEYPTKSRAIQGVISIKVSKRNGKV 784

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
              V+V   D + ++ ++  L+   + ++  + R   GVRL   
Sbjct: 785 VGAVQVNDYDQIMIITDSGTLVRIRVSEVSIVGRNTHGVRLIRI 828


>gi|238789170|ref|ZP_04632958.1| DNA topoisomerase 4 subunit A [Yersinia frederiksenii ATCC 33641]
 gi|238722702|gb|EEQ14354.1| DNA topoisomerase 4 subunit A [Yersinia frederiksenii ATCC 33641]
          Length = 757

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 277/756 (36%), Positives = 445/756 (58%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+EI +A +ALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+
Sbjct: 178 VGMATDIPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 NGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+
Sbjct: 353 EWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFA 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D + 
Sbjct: 473 AAAYGD-----DRRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPTG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LSYKAGDSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660
               +   + KLL+ S  G  F+   ++++A  R GKT + +    K+   +++    D 
Sbjct: 587 EQVLMAPDSQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDM 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDS 714
           +  +    ++L+F +  +PE+S+GKG ++ S      +        +     +    +  
Sbjct: 647 LLSITAAGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHF 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  GS +P+G  R  + 
Sbjct: 707 GKRKLTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|191167552|ref|ZP_03029364.1| DNA topoisomerase IV, A subunit [Escherichia coli B7A]
 gi|190902409|gb|EDV62146.1| DNA topoisomerase IV, A subunit [Escherichia coli B7A]
          Length = 752

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E      E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSEREKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|311114019|ref|YP_003985240.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
 gi|310945513|gb|ADP38217.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
          Length = 879

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 223/777 (28%), Positives = 375/777 (48%), Gaps = 28/777 (3%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
              + ++   +    VK + L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM
Sbjct: 28  QESDNTDYGLMKGARVKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAM 87

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G      + K +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+ 
Sbjct: 88  YDGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSP 147

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D AAA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++
Sbjct: 148 GDDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSA 207

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN++E+ +     +D+P+ S  +    L++ I GPDFPTG  I+   +
Sbjct: 208 GIAVGMATNIPPHNMREVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATIL-GHK 266

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++YR GRG   +RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  
Sbjct: 267 GIEQAYRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQG 325

Query: 298 LEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + D+RDE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + 
Sbjct: 326 IADMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLS 384

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           LD  ++ W++H+ EV+ RR+ +  +  + R  IL+G L A   IDE++A+IR+       
Sbjct: 385 LDAFIRHWVSHQLEVIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTA 444

Query: 417 M---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
               ++   + + Q DAIL ++LR L  LE  +I  E + L+ + E  + +L S ++Q  
Sbjct: 445 RTGLMNLLDVDDVQADAILAMQLRRLAALERQKILDEHEELMRKIEDYNDILASPERQRK 504

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            +  E+ E+   +           +         A     +       +  +     R+ 
Sbjct: 505 IVGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTRAGYIKRTKADEYRAQ 564

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
                 +     +E D +       T + +L  +  G+ Y + A  L  G    +   + 
Sbjct: 565 HRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRIKAYELPEGSRDSKGQHVA 624

Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---- 644
            L+     + I        YD    L++ +  G        E  +  + G   +++    
Sbjct: 625 NLLQFTPGETIQAVLSIPNYDVAKYLVLATRSGKVKKTALQEYDSPRQGGLIAVRLMTNE 684

Query: 645 ---SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG- 696
                 +++         D + +V +    L F  D   +  M R   GV+   +++   
Sbjct: 685 ETGEPADELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTAGVQGMRFREDDE 744

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + D+    +      +      + +        L  R G G    +     G  + +
Sbjct: 745 LLDMDVVSVETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGA 801


>gi|90020047|ref|YP_525874.1| DNA topoisomerase IV subunit A [Saccharophagus degradans 2-40]
 gi|89949647|gb|ABD79662.1| DNA topoisomerase IV subunit A [Saccharophagus degradans 2-40]
          Length = 748

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 261/757 (34%), Positives = 436/757 (57%), Gaps = 24/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T+V +  + + L+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTES-TVVYDAEEQIPLKQFSEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+VIGK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   
Sbjct: 60  LKSTAKYKKSARTVGDVIGKFHPHGDSASYEAMVIMAQPFSFRYPLVDGQGNWGSQDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+   ++++L  + +  VD++  ++    EP V P+K P +L NGT+GIA
Sbjct: 120 SFAAMRYTESRLAAFSDVLLAELGQGTVDWQPNFDGTLDEPKVLPAKVPTVLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  A + L++NP  ++ +L E+++GPD PT   I+  RE I++ Y 
Sbjct: 180 VGMATDIPPHNLRELVNATIHLLENPNATVPELCEHLLGPDMPTEAEIISPREDIIKMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  ++RA W  E         V+T +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 240 TGKGSLKMRAIWTKE-----GNDAVITALPHQVSGAKILEQIAAQMQAKKLPMVADLRDE 294

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  LD IL 
Sbjct: 295 SDHENPTRLVIVPRSNRIDIDGVMNHLFATTDLERNYRVNLNMIGINGRPGVRSLDKILG 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           +WL+ R   + RR   R+  ++RR+ +L   LIA+LN+DE+I I+R EDKP+ V++ RF 
Sbjct: 355 DWLSFRMVTVRRRLQHRLDWVNRRLHLLDAALIAFLNLDEVIEIVRTEDKPREVLMQRFD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL+ RLR L +LEE +I+ E D L  E++ I+  L S +     I  ++ +V
Sbjct: 415 LTEEQANYILDTRLRQLARLEEMKIRGEQDELQKERDTIEKTLGSARMMKTLIKKDMLQV 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            +          RR+         +A  +  ++  EP+TVV+S +GWIRS K H +D ++
Sbjct: 475 LKEHGDE-----RRSPIV-TREESQAFSEDQLLTSEPVTVVLSEKGWIRSAKGHEMDPAS 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +   ++L+ + G++Y L A  L S RG GE +   ++      I
Sbjct: 529 LSYKAGDEFKFASRGKSNQSVILIDSTGRSYALAAHTLPSARGQGEPVTGRLNPPSGATI 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               +     ++L+ S  G  F+ +  ++++  + GK  L +    ++     +      
Sbjct: 589 EGMLMGSEDQRVLLASDAGYGFVGKLGDLVSKNKAGKAALTLPKGAEVLPPTVIEDLDNT 648

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI------SDVICFKICEGLTWID 713
            +A      +LL+F + ++PE++RGKG ++ +     +         +          + 
Sbjct: 649 WLAAFSNEGRLLVFKVTELPELARGKGNKIINIPSARVQNREEFVIALAVVQASDTLKVV 708

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S  R  N    DL  ++G+RG  G+ +P+GF +    
Sbjct: 709 SGKRHLNLKFKDLEHYIGERGRRGNKLPRGFQKVDAV 745


>gi|331664632|ref|ZP_08365538.1| DNA topoisomerase IV, A subunit [Escherichia coli TA143]
 gi|331058563|gb|EGI30544.1| DNA topoisomerase IV, A subunit [Escherichia coli TA143]
          Length = 752

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALI+ P  ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIEQPNTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLREILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 476 -----RRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|229818509|ref|YP_002880035.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333]
 gi|229564422|gb|ACQ78273.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333]
          Length = 885

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 228/769 (29%), Positives = 386/769 (50%), Gaps = 42/769 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L+  ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G    +AF K
Sbjct: 30  DRVEQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDGGYRPDSAFSK 89

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+V+G  HPHGD ++YD+LVRL QP+  RYPL++GQGNFG+   DSAAA RYTE 
Sbjct: 90  CARVVGDVMGNYHPHGDTAIYDALVRLVQPWSMRYPLVAGQGNFGSPGDDSAAAPRYTEC 149

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +D+D VDF D Y+    EP++ P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 150 KMAPLAMEMVRDIDKDTVDFGDNYDGRTQEPLILPARFPNLLVNGSAGIAVGMATNIPPH 209

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ E     +++P+ + E+LL      I GPDFPTG  I+     I ++YR GRG  
Sbjct: 210 NLREVAEGVEWFLEHPDATNEELLGALLLRIKGPDFPTGAQIL-GHRGIEDAYRTGRGSI 268

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA   VEE+ +G  C+VVTE+PYQV   RL  KI E++   RI  + D+RDE++    
Sbjct: 269 TMRAVVEVEEI-QGRQCLVVTELPYQVNPDRLAAKIGEMVREGRISGIADLRDETSGRAG 327

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  + ++  F  NM  L    VP+ + LD  ++ W  H+ 
Sbjct: 328 QRLVIVLKRDAVAKVVLNNLYKHTQLQDTFGANMLALVD-GVPRTLSLDAFVRHWTMHQI 386

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTEN 426
           +V+ RR+ + +   +RR+ IL+GLL A   +DE+IA+IR                 + E 
Sbjct: 387 DVIVRRTRYLLAEDERRIHILRGLLKALNALDEVIALIRRSPSSDEARTGLMELLEIDEV 446

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++LR L  LE+ +I  E   + A       +L S ++Q + +  E+  + E +
Sbjct: 447 QATAILDMQLRRLAALEQQRIMDEHAAIEARILDYQDILASEERQRSIVRSELGAIVERY 506

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRTT             + +I +E + V I+  G+ +  ++ +         
Sbjct: 507 GDE-----RRTTILPFDGEMS---VEDLIPEEDVVVTITRGGYAKRTRTDNYRAQRRGGK 558

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T   +L  +  G+ Y      L  G    +   +  L+  
Sbjct: 559 GVRGAQLREDDVVDHFFVTTTHHWLLFFTNLGRVYRAKGYELPEGGRDAKGQHVANLLAF 618

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-----E 648
              + I        YD    L++ + +G       +E  ++   G   + + ++     +
Sbjct: 619 QPGEKIAQVLALRDYDQADYLVLATKRGLVKKTRLAEYDSSRTGGVIAINLRTDDGGAVD 678

Query: 649 KMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFK 704
           ++     V   D + +V    + + F+     +  M+R   GV    ++       +   
Sbjct: 679 EVVSARIVGAEDDLLLVSRKGQSIRFTATDEALRPMARATSGVTGMKFRADDELLAMDVV 738

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   ++      + +        +  RGG+G  V       G  + +
Sbjct: 739 ETDADLFV-VTEGGFAKRTALGEYRVQGRGGLGIKVANLVEARGDLVGA 786


>gi|120600192|ref|YP_964766.1| DNA topoisomerase IV subunit A [Shewanella sp. W3-18-1]
 gi|120560285|gb|ABM26212.1| DNA topoisomerase IV subunit A [Shewanella sp. W3-18-1]
          Length = 758

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 263/757 (34%), Positives = 435/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R RA + VE     S  I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSLRARAVYTVE-----SGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RFS
Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPKVELMARFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I +E + L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   +   +   T Q+     EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 AETYGD-----NRRSPIVQRHESRALTEQEL-TPSEPVTVVLSEKGWVRCAKGHDIDPLS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--- 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K      +  +   
Sbjct: 590 QHVIMGEEEQCYLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLPPKLIDRNREM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++             +   +     +    + 
Sbjct: 650 SLLAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKSRDELMTHLQLVPSDTSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|294637123|ref|ZP_06715433.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685]
 gi|291089683|gb|EFE22244.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685]
          Length = 718

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 248/724 (34%), Positives = 369/724 (50%), Gaps = 50/724 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG++GIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLEKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  I+IE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRAR  +E +   G   IVV EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYVRARAEIETDAKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + M+  F +NM  L     P+++ L   L+ +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSQTQMQVSFGINMVAL-HQGQPKLLTLKECLEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARERAHILEGLAIALANIDPIIEMIRHAPTPAEAKAALVSHA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WALGNVAAMLERAGDDAARPEWLEPQYGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +   +  +L S ++    I  E+  ++E F  +        T         
Sbjct: 475 LDEYKLLLEQIAALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D ++  L A+T D IL  S
Sbjct: 535 EQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  ++ I        Y     + + ++ G 
Sbjct: 595 SRGRMYWMKVYQLPEASRGARGRPIINLLPLEADERITAILPVREYAEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRAAGIIAVNLNDGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SRGK 685
            R  
Sbjct: 715 GRTA 718


>gi|295689998|ref|YP_003593691.1| DNA gyrase, subunit A [Caulobacter segnis ATCC 21756]
 gi|295431901|gb|ADG11073.1| DNA gyrase, A subunit [Caulobacter segnis ATCC 21756]
          Length = 918

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 242/856 (28%), Positives = 380/856 (44%), Gaps = 113/856 (13%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  ++ +        ++  +++   L   YL YA+S I  RA+PD RDG KPVHRR++ +
Sbjct: 1   MSDEHTTIPADGSRGDIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G      + KSAR+VG+V+GK HPHGD S+Y +LVR+ QPF     LI GQGNFG+
Sbjct: 61  MHEQGQTPERPYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQPFSMGLVLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTE RM   A  +L  +D+D VDF D Y+ ++ EP V P++ PNLL NG 
Sbjct: 121 VDGDMPAAMRYTECRMAPPAMALLADLDKDTVDFVDNYDGKEQEPTVLPARIPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A L LID PEI+ ++LL+ + GPDFPTGG I+  R    
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACLLLIDEPEITTDQLLDLVPGPDFPTGGEII-GRAGPR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++   GRG   +R    VE++  G   I+VTEIPYQV K+ L+E IAEL+  K++  + D
Sbjct: 240 QALLTGRGSVIMRGVASVEDLRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKLEGIAD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  D   ++    R    ++++  ++  + +++ F +NM  L+    P+ M L  +
Sbjct: 300 IRDESNRDGMRIVIELKRDASGEVILNQLYRFTALQSSFGVNMLALN-RGRPEQMGLHKL 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+ ++  R EV+ RR+ F +     R  +L GL IA  NIDE I IIR+   P       
Sbjct: 359 LQLFVEFREEVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERL 418

Query: 421 FSLT-----------------------------ENQVDAILNLRLRSLRKLEEYQIKSEL 451
            + +                             + Q  AIL L L  L  L   +I +E 
Sbjct: 419 VAKSWPAGDMLPLVELIADPRTIQEEGGLIRLTDEQARAILALTLSRLTGLGREEIGNEA 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + L         LL+        +  E+ EV+E F+       RR    +     +    
Sbjct: 479 ETLADAIRGYLELLSDRANIMAVVREELVEVREKFAVP-----RRCQIVDGDADME---D 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + + ++  G+++                 S +  K  D++     A T   +
Sbjct: 531 EDLIVREDMVITVTMGGYVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPL 590

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  ++ GK Y +    L        G+A   L+ +   + I +               ++
Sbjct: 591 LFFTSGGKVYKMKVWRLPLGVANSRGKAFVNLLPIESGETITSILALPEDEATWSGLDVM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
             +  G+    + S+ +   R GK  +K+   + +  V     D  V +     + + FS
Sbjct: 651 FATRSGSVRRNKLSDFVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFS 710

Query: 675 IDQIPEM-SR-GKGVRLQSY-------------------------------------KDG 695
           +D++    SR   GVR                                         ++G
Sbjct: 711 VDEVRVFASRDSTGVRGVRLAEGDEVISMAVLRSVDATPAERAAYLKHQRAMLRAAGEEG 770

Query: 696 GISDV------------------ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             + V                  I          +  +   + +  +        RGG G
Sbjct: 771 DDAPVAAEEGEEDADETTLSPERIAELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQG 830

Query: 738 SLVPKGFPRSGKFLSS 753
                   R G+ + S
Sbjct: 831 LAAQDLSKRGGRLVGS 846



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVTG-DHVAVVG 665
           +   LL VSS+G        +     R G+            ++     +   D + +V 
Sbjct: 800 AEEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLSKRGGRLVGSFPIDESDQILLVT 859

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRL-QSYKDGGISDVICFKICEGLT 710
           +  +L+   + QI   +R  +GV + ++ +D  +  V       G  
Sbjct: 860 DQGQLIRVPVSQIRVAARNTQGVTIFRTAQDEHVVSVERLADSGGDD 906


>gi|332186141|ref|ZP_08387887.1| DNA gyrase, A subunit [Sphingomonas sp. S17]
 gi|332013956|gb|EGI56015.1| DNA gyrase, A subunit [Sphingomonas sp. S17]
          Length = 916

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 246/835 (29%), Positives = 388/835 (46%), Gaps = 97/835 (11%)

Query: 6   ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +++  TL E  ++  +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++ +E 
Sbjct: 1   MADETTLAEPSDISTISIVDEMKSSYLDYAMSVIVARALPDVRDGLKPVHRRILYSAAES 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G   G  ++KSARIVG+V+GK HPHGD ++YD+L R+AQ +  R PLI GQGNFG++D D
Sbjct: 61  GFVAGKPYRKSARIVGDVMGKYHPHGDSAIYDALARMAQDWSMRVPLIDGQGNFGSMDPD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+ +VA  +L  +D+D VDF+  Y+  + EP V P+++PNLL NG  GIA
Sbjct: 121 PPAAMRYTEARLAKVANSLLDDLDKDTVDFQPNYDGSEREPSVLPAQYPNLLVNGAGGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+  A LA ++N  I++E+L E +  PDFPTG  ++  R     +Y+
Sbjct: 181 VGMATNIPPHNLGEVVNACLAYMENGAITVEELNEIVPAPDFPTGA-LILGRSGARSAYQ 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   VR+R  +EE+      IV+TEIPYQ  K+ L+EKIAE    KRI  + DIRDE
Sbjct: 240 TGRGSIIVRSRHEIEEMRGDRRAIVLTEIPYQQGKNALVEKIAEAAKEKRIEGISDIRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R   P++++  ++  +  +T FP    +   G  P+++ L  I++ +
Sbjct: 300 SNREGVRIVIDLKRDATPEVVLNQLWRHTPAQTSFPA-NMLAIRGGRPELLNLRDIIQAF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---------- 414
           +  R +V+ RRS F +     R  IL GL+IA  N+DE++ IIR    P           
Sbjct: 359 VQFREQVITRRSKFELAKARERAHILLGLVIAVTNLDEVVRIIRGSASPVAAREALLARE 418

Query: 415 ------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+E QV AIL+LRL  L  L   +I  EL  L  
Sbjct: 419 WPIAEIAPYIRLVEAVESEGFGDTYRLSETQVRAILDLRLHRLTALGRDEIGDELKGLAD 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++  +L +  + +  +  E+  +++ F+       RR+   E++ A      + +IE
Sbjct: 479 SITELLEILANRVKLYEVMRGELVAIRDQFATP-----RRS---EIAAAADGIDDEDLIE 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V ++ +G+I+                 S +  K+ D +       T   +L  S 
Sbjct: 531 REDMVVTVTMQGYIKRTPLDAFRAQNRGGKGRSGMATKDEDVVTELFVTSTHTPVLFFSN 590

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            GK Y      L        G  +  L+ L   + I T               ++  ++K
Sbjct: 591 HGKVYRYKVWRLPEGGPATRGRPMVNLLPLAPGEVISTVLPLPEDEAEWGKLHVMFATAK 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSS--EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ 677
           G                GK  ++     E+++  V  +   D V +     + + F+ D 
Sbjct: 651 GAVRRNSMDAFTNVPSNGKIAMRFDDESEDRLIGVALLGAEDDVLLATRCGRAIRFAADD 710

Query: 678 IPE-MSRG-KGVRLQSYKDGGISDVICFKI------------------------------ 705
           + E  SR   GVR  + K       +                                  
Sbjct: 711 VREFQSRTSTGVRGIALKGEDEVISLSVLHRVGTTQEEREAYLRFAPWKGEKEGEPELSV 770

Query: 706 -------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                        +      Y +  +        RGG G        R+G  ++S
Sbjct: 771 ERYEELRESEQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIARNGDVVAS 825



 Score = 57.9 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVV 664
           +S   +L V + G   +    E     R G+    + +     + +       G  + +V
Sbjct: 778 ESEQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIARNGDVVASFPASKGHQLMLV 837

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG-ISDVICFKICEGL 709
            +  KL+  S+  +  + RG  G+RL +   G  +      +  E  
Sbjct: 838 TDQAKLIRMSLASLRVIGRGSAGLRLFNVAPGEHVVSAARIEETEED 884


>gi|323183606|gb|EFZ69003.1| DNA topoisomerase IV, A subunit [Escherichia coli 1357]
          Length = 749

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/745 (36%), Positives = 444/745 (59%), Gaps = 25/745 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR
Sbjct: 3   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 62

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARM 136
            VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+
Sbjct: 63  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 122

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN+
Sbjct: 123 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 182

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W
Sbjct: 183 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLF 314
             E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ 
Sbjct: 243 KKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 297

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + R
Sbjct: 298 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L
Sbjct: 358 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILEL 417

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        
Sbjct: 418 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD-----D 472

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A
Sbjct: 473 RRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAA 531

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +   +   ++ + + G++Y +    L S RG GE +   + L     +    +     KL
Sbjct: 532 VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKL 591

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLI 672
           L+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + +  ++L+
Sbjct: 592 LMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLM 651

Query: 673 FSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           F +  +P++S+GKG ++ +         + G++ +        LT      R       +
Sbjct: 652 FPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIKLRPEE 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L    G+RG  G+ + +G  R  + 
Sbjct: 711 LQKVTGERGRRGT-LMRGLQRIDRV 734


>gi|283782557|ref|YP_003373311.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05]
 gi|283441808|gb|ADB14274.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05]
          Length = 876

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 226/772 (29%), Positives = 376/772 (48%), Gaps = 28/772 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++   +    VK + L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G 
Sbjct: 33  TDYGLMKGARVKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGY 92

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D A
Sbjct: 93  RPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPA 152

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVG
Sbjct: 153 AAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVG 212

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ +     +D+P+ S E+    L++ I GPDFPTG  I+   + I ++
Sbjct: 213 MATNIPPHNMREVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATIL-GHKGIEQA 271

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  + D+R
Sbjct: 272 YRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMR 330

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  +
Sbjct: 331 DETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFI 389

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---V 418
           + W+ H+ EV+ RR+ +  +  + R  IL+G L A   IDE++A+IR+    +      +
Sbjct: 390 RHWVTHQLEVIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLM 449

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           +   + E Q DAIL ++LR L  LE  +I  E ++L+ +    + +L S ++Q   +  E
Sbjct: 450 NLLDVDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDILASPERQRKIVGDE 509

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+   +           +         A     +       +  +     R+      
Sbjct: 510 LDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGK 569

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y L A  L  G    +   +  L+  
Sbjct: 570 GIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGSRDSKGQHVANLLQF 629

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
              + I        YD    L++ +  G        E  +  + G   +++ +       
Sbjct: 630 TPGETIQAVLSIPNYDVAKYLVLATRSGKVKKTALQEYDSPRQGGLIAVRLMANEETGEP 689

Query: 648 -EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG-ISDVI 701
            +++         D + +V +    L F  D   +  M R   GV+   +++G  + D+ 
Sbjct: 690 VDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTAGVQGMRFREGDELLDMD 749

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +      + +        L  R G G    +     G  + +
Sbjct: 750 VVAAETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGA 801


>gi|262042306|ref|ZP_06015471.1| topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040370|gb|EEW41476.1| topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 752

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 263/749 (35%), Positives = 440/749 (58%), Gaps = 23/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWSKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K +    +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SWKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +   +  +   
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESNMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRSYNR 721
            ++L+F +  +P++S+GKG ++ S      +        +     +    I    R    
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIISIPAAEAASGQDGLAHLFVLPPQSTLTIHVGKRKIKL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +L    G+RG  GS + +G  +  + 
Sbjct: 710 RPEELQKVTGERGRRGS-LMRGLQKIDRV 737


>gi|295097533|emb|CBK86623.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 752

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 265/749 (35%), Positives = 441/749 (58%), Gaps = 23/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ S++ LL+ + GPD+PT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTSLDDLLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L +LEE +I+ E + L  E++++ ++L S ++    +  E++   + F   
Sbjct: 416 AILELKLRHLARLEEMKIRGEQNELEKERDQLQAILASERKMNTLLKKELQADADAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREEA-KAMNEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKSGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   +  + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVAFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMEA 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  FI   +++++  R GK  + +     +   + +    D +  +   
Sbjct: 590 DDQKLLMASDAGYGFICTFNDLVSRNRAGKALISLPDNAHVMPPLIIENESDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI------CFKICEGLTWIDSAGRSYNR 721
            ++L+F +  +PE+S+GKG ++ S      +  +           +    I    R    
Sbjct: 650 GRMLMFPVSDLPELSKGKGNKIISIPSAEAAKGVDGLAHLFLLPPQSTLTIHVGKRKIKL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +L   +G+RG  GS + +G  R  + 
Sbjct: 710 RPEELQKVVGERGRRGS-LMRGLQRIDRV 737


>gi|91212438|ref|YP_542424.1| DNA topoisomerase IV subunit A [Escherichia coli UTI89]
 gi|117625327|ref|YP_854531.1| DNA topoisomerase IV subunit A [Escherichia coli APEC O1]
 gi|191172499|ref|ZP_03034039.1| DNA topoisomerase IV, A subunit [Escherichia coli F11]
 gi|215488349|ref|YP_002330780.1| DNA topoisomerase IV subunit A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218560098|ref|YP_002393011.1| DNA topoisomerase IV subunit A [Escherichia coli S88]
 gi|218691318|ref|YP_002399530.1| DNA topoisomerase IV subunit A [Escherichia coli ED1a]
 gi|237706229|ref|ZP_04536710.1| topoisomerase IV subunit A [Escherichia sp. 3_2_53FAA]
 gi|300993206|ref|ZP_07180269.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 200-1]
 gi|306816635|ref|ZP_07450767.1| DNA topoisomerase IV subunit A [Escherichia coli NC101]
 gi|312968640|ref|ZP_07782849.1| DNA topoisomerase IV, A subunit [Escherichia coli 2362-75]
 gi|331659305|ref|ZP_08360247.1| DNA topoisomerase IV, A subunit [Escherichia coli TA206]
 gi|91074012|gb|ABE08893.1| topoisomerase IV subunit A [Escherichia coli UTI89]
 gi|115514451|gb|ABJ02526.1| DNA topoisomerase IV subunit A [Escherichia coli APEC O1]
 gi|190907167|gb|EDV66766.1| DNA topoisomerase IV, A subunit [Escherichia coli F11]
 gi|215266421|emb|CAS10859.1| DNA topoisomerase IV, subunit A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218366867|emb|CAR04637.1| DNA topoisomerase IV, subunit A [Escherichia coli S88]
 gi|218428882|emb|CAR09827.2| DNA topoisomerase IV, subunit A [Escherichia coli ED1a]
 gi|222034745|emb|CAP77487.1| DNA topoisomerase 4 subunit A [Escherichia coli LF82]
 gi|226899269|gb|EEH85528.1| topoisomerase IV subunit A [Escherichia sp. 3_2_53FAA]
 gi|294491010|gb|ADE89766.1| DNA topoisomerase IV, A subunit [Escherichia coli IHE3034]
 gi|300305132|gb|EFJ59652.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 200-1]
 gi|305850200|gb|EFM50659.1| DNA topoisomerase IV subunit A [Escherichia coli NC101]
 gi|307625374|gb|ADN69678.1| DNA topoisomerase IV subunit A [Escherichia coli UM146]
 gi|312286858|gb|EFR14769.1| DNA topoisomerase IV, A subunit [Escherichia coli 2362-75]
 gi|312947583|gb|ADR28410.1| DNA topoisomerase IV subunit A [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315288741|gb|EFU48139.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 110-3]
 gi|315297721|gb|EFU56998.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 16-3]
 gi|320195173|gb|EFW69802.1| Topoisomerase IV subunit A [Escherichia coli WV_060327]
 gi|323951454|gb|EGB47329.1| DNA topoisomerase IV [Escherichia coli H252]
 gi|323957826|gb|EGB53540.1| DNA topoisomerase IV [Escherichia coli H263]
 gi|324011927|gb|EGB81146.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 60-1]
 gi|331053887|gb|EGI25916.1| DNA topoisomerase IV, A subunit [Escherichia coli TA206]
          Length = 752

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 476 -----RRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVAGERGRRGT-LMRGLQRIDRV 737


>gi|187731712|ref|YP_001881790.1| DNA topoisomerase IV subunit A [Shigella boydii CDC 3083-94]
 gi|187428704|gb|ACD07978.1| DNA topoisomerase IV, A subunit [Shigella boydii CDC 3083-94]
          Length = 752

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYILPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|324005411|gb|EGB74630.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 57-2]
          Length = 752

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 476 -----RRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +    + + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPGVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVAGERGRRGT-LMRGLQRIDRV 737


>gi|78184300|ref|YP_376735.1| DNA gyrase subunit A [Synechococcus sp. CC9902]
 gi|78168594|gb|ABB25691.1| DNA gyrase subunit A [Synechococcus sp. CC9902]
          Length = 886

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 232/794 (29%), Positives = 391/794 (49%), Gaps = 64/794 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +    LR  +   Y+ YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDERIIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +  + +L+ ++ + VD+ D ++    EP V P++ P LL NG++GIAVGMAT+I
Sbjct: 135 ESRLRALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +ALI+NPEIS ++L+  I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 195 PPHNLSELIDGLMALINNPEISEQELITLIPGPDFPTGGQIL-GRAGIRETYLSGRGSVT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    VE +          +++T +PYQ  K+ LIE+IAE++  K++  + DIRDES  
Sbjct: 254 MRGVAEVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  +M  L     P ++ L  +L+ +L  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALV-NGEPILLTLRKMLEVFLDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLT 424
           R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L+
Sbjct: 373 RIETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQDRHGLS 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++    I  E+ +++E
Sbjct: 433 AVQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVLGLIQEELVQLRE 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SH 536
             S       RRT   +++   +      +I  E   V+++  G+++ +           
Sbjct: 493 RHSVP-----RRTEILDLAGGLEDI---DLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
           +   +    +  +++K+ +  +  D +LL S  G AY LPA  +       +   +  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I +      ++    LL+++  G       S        G   + +   + + 
Sbjct: 605 PIPREEAITSLLAVSEFNDDTDLLMLTQGGFIKRTRLSAFSNIRSNGLIAIGLEDGDALT 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVI------ 701
            V   + GD V +  +    + F +    +  + R  +GVR  + + G     +      
Sbjct: 665 WVRLSIPGDSVLIGSKAGMTIHFRLADGELRPLGRTARGVRSMNLRKGDSLVSMDVLPAE 724

Query: 702 -----------------------CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
                                       EG   + ++     +        L KR G+G 
Sbjct: 725 LADQIAASADDAGDGDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGL 784

Query: 739 LVPKGFPRSGKFLS 752
              K    + + + 
Sbjct: 785 RAMKFRTDADELVG 798



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 5/109 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLVVKV-TGDHVA 662
           V      +LV S+ G    V  ++     R G     +K  ++ +++  +  +  G+ + 
Sbjct: 750 VAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVGLRVLGAGEELL 809

Query: 663 VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           +V E   ++    D IP+ SR   GVRLQ    G     +     E  T
Sbjct: 810 LVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDRLADVVLVPPEAET 858


>gi|56551588|ref|YP_162427.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543162|gb|AAV89316.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 925

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 254/830 (30%), Positives = 385/830 (46%), Gaps = 97/830 (11%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +    ++  VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  E G   G
Sbjct: 35  PSTDTNDISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPG 94

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++KSA+IVGEV+G  HPHGD ++Y +L RL Q +  R PLI GQGNFG++D D  AA 
Sbjct: 95  HPYRKSAKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAM 154

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++  A ++L  +D D VDF   Y+    EP V P++FPNLL NG  GIAVGMAT
Sbjct: 155 RYTEARLSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMAT 214

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+  A  A I +P ISIE L+  + GPDFPTGG ++  +     +Y+ GRG 
Sbjct: 215 NIPPHNLGEVLTACRAYIADPAISIEDLIRLVPGPDFPTGG-VMLGQGGARSAYQNGRGS 273

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R+R+ +EE       IV+TEIPYQ+ KS L+EKIAE    KR+  + DIRDES  + 
Sbjct: 274 IIIRSRYNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREG 333

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   PD+++  ++  +  ++ FP NM  L+ G  P+ M L  I+  ++  R 
Sbjct: 334 VRVVIDLKRDATPDVVLNQLWRHTPAQSSFPANMLALN-GGRPETMSLKDIIAAFVQFRE 392

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------- 419
           EV+ RRS + +     R  +L G++IA  N+DE++ IIRN   P                
Sbjct: 393 EVITRRSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVND 452

Query: 420 ------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              ++L++ QVDAIL LRL  L  +   QI  EL  L     ++
Sbjct: 453 VLPYIKLIEAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISEL 512

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L + ++ +  +  E   V+  F+       RRT       A  A   + +IE+E + 
Sbjct: 513 LEVLRNRERLYEIMVEEFDAVEAQFATP-----RRTQIV---AASDAIEDEDLIEREEMV 564

Query: 522 VVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +++ G+I+                 S +  K+ D++       T   +L  S  GK Y
Sbjct: 565 VTVTHGGYIKRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVY 624

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFI 625
            L    L     +  G  +  L+ L   + + T               +L  ++KG+   
Sbjct: 625 RLKVWRLPEGAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRR 684

Query: 626 VEESEIIANTRKGKTFLKVS--SEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-M 681
                       GK  ++     ++++  V  +   D V +   N K + F+   +    
Sbjct: 685 NSMDAFTNVPSNGKFAIRFDEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQ 744

Query: 682 SRG-KGVRLQSYKDGGIS-------------------------------------DVICF 703
           SR   GVR  + KDG                                         +  F
Sbjct: 745 SRTSTGVRGITLKDGDEVISLSTLRGFETTVEDRDKYLRSAAWKTDPAPAELPPEKIKAF 804

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  E    +      Y +  +        RGG G    +   R+G  ++S
Sbjct: 805 EEAEDF-ILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERNGSVVAS 853



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 6/139 (4%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +                     + + AF  ++   +L V++ G        E   + R
Sbjct: 775 VEDRDKYLRSAAWKTDPAPAELPPEKIKAFE-EAEDFILTVTANGYGKRTSSHEYRRSNR 833

Query: 637 KGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
            G+    + + E+   VV       GD + +V +  KL+  +++ I    R  +GV + +
Sbjct: 834 GGQGITNIETSERNGSVVASFPAHDGDQLMLVTDQAKLIRTTVNDIRIAGRNTQGVTIFN 893

Query: 692 YKDGGISDVICFKICEGLT 710
             +G           +G  
Sbjct: 894 VAEGEQVVSAARITDDGDD 912


>gi|323966552|gb|EGB61985.1| DNA topoisomerase IV [Escherichia coli M863]
          Length = 752

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F+ +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFVTTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNKLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|206579415|ref|YP_002236559.1| DNA topoisomerase IV, A subunit [Klebsiella pneumoniae 342]
 gi|288933542|ref|YP_003437601.1| DNA topoisomerase IV, subunit alpha [Klebsiella variicola At-22]
 gi|290511399|ref|ZP_06550768.1| DNA topoisomerase IV, A subunit [Klebsiella sp. 1_1_55]
 gi|206568473|gb|ACI10249.1| DNA topoisomerase IV, A subunit [Klebsiella pneumoniae 342]
 gi|288888271|gb|ADC56589.1| DNA topoisomerase IV, A subunit [Klebsiella variicola At-22]
 gi|289776392|gb|EFD84391.1| DNA topoisomerase IV, A subunit [Klebsiella sp. 1_1_55]
          Length = 752

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 265/749 (35%), Positives = 440/749 (58%), Gaps = 23/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWSKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++ ++L S ++  N +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQAILASERKMNNLLKKELQADADAFGDE 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M   EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 476 -----RRSPLHEREEA-KAMSEHDMQPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K +    +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SWKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +    D +  +   
Sbjct: 590 DDRKLLMASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRSYNR 721
            ++L+F +  +P++S+GKG ++ S      +        +     +    I    R    
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFILPPQSTLTIHVGKRKIKL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +L    G+RG  GS + +G  +  + 
Sbjct: 710 RPEELQKVTGERGRRGS-LMRGLQKIDRV 737


>gi|300724858|ref|YP_003714183.1| DNA topoisomerase IV subunit A [Xenorhabdus nematophila ATCC 19061]
 gi|297631400|emb|CBJ92097.1| DNA topoisomerase IV, subunit A [Xenorhabdus nematophila ATCC
           19061]
          Length = 750

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 274/753 (36%), Positives = 442/753 (58%), Gaps = 23/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+   L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SEITHDGVERQPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A +A++D PE+S+++ +EYI GPD+PT   I+  ++ I + Y+ GRG
Sbjct: 182 TDIPPHNAREVASALIAMLDKPELSLDEAMEYIKGPDYPTEAEIITPKDDIRKIYKNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE       +++T +P+QV  ++++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAIWSKEEGN-----VIITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDVEQVMNHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RRE +  R + R++ + +R+ IL GLL AYLNIDE+I +IRNED+PKPV++ RF LTE 
Sbjct: 357 YRRETVRNRLNHRLEKVLKRLHILDGLLAAYLNIDEVIHLIRNEDEPKPVLMQRFGLTET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +A+L L+LR L KLEE +I+ E D L  E++K+ S+L S ++    +  EI    E +
Sbjct: 417 QAEAVLELKLRHLAKLEEVKIRGEQDELSKERDKLQSILGSERKLNTLLKKEIIADAESY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A KA     ++  EPITVV+S  GW+RS K H +D + L++K
Sbjct: 477 GD-----DRRSPLKERIEA-KAMSDHDILPSEPITVVMSEMGWVRSAKGHEIDPAGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A+   +   ++ + T G++Y++   +L S RG GE +   + L     +    
Sbjct: 531 SGDSFRSAVRGKSNQPVVFIDTTGRSYSVDPLDLPSARGQGEPLTGKLALPAGALVEHLL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAV 663
           +     K L+ S  G  FI   S++IA  R GK  + +    K+   +++  +    +  
Sbjct: 591 MAKEEQKFLMASDAGYGFICTFSDLIAKNRAGKALITLPENAKVMEPLEINNEQDEMLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGR 717
           + +  ++L+F +  +P++S+GKG ++ S               +     +    +    R
Sbjct: 651 ITKAGRMLMFPVSDLPQLSKGKGNKIVSIPAAQAVSGEDTLSWLLVLSPQSTITLYFGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +  +RG  G+ +P+G  R  + 
Sbjct: 711 KLQLRPEDLQKFRAERGRKGTSLPRGLQRVERV 743


>gi|170728513|ref|YP_001762539.1| DNA topoisomerase IV subunit A [Shewanella woodyi ATCC 51908]
 gi|169813860|gb|ACA88444.1| DNA topoisomerase IV, A subunit [Shewanella woodyi ATCC 51908]
          Length = 758

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 265/757 (35%), Positives = 436/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LTSQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  + +++E++ GPD+PT   I+     IV+ Y 
Sbjct: 181 VGMATDVPPHNTRELVSACIELLDNPKAELAEIMEHVPGPDYPTEAEIITPAADIVKIYT 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     +  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYAVE-----NGEIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D +M  +F  +D+E  F +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHESPVRIVIVPRSNRIDCDQVMAHLFATTDLEKSFRVNLNILGLNGRPQVKGLLQILN 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R + + RR  +R+  I  R+ IL  L+IA+LNIDE+I IIR E+ PK  ++SR++
Sbjct: 356 EWLEYRFQTVTRRVQYRLDKILARLHILDALMIAFLNIDEVIEIIRYEEDPKAELMSRYN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAIL+L+LR L KLEE++IK+E   L AE++K+  LL+S ++    I  E+++ 
Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKTEQSELEAERDKLQLLLSSDRRMKTLIKKELKQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E S +   T  +     E +TVV+S +GW+R  K H +D  A
Sbjct: 476 AETYGD-----DRRSPLIERSESKALTEHEL-APVEAVTVVLSEKGWVRCAKGHDIDAKA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS   +    +    + + + G+A+      L S R  GE I    +L+  + +
Sbjct: 530 LSYKAGDSFLCSATGRSNQPSVFIGSTGRAFATETHTLPSARSQGEPITTRFNLSPGEIM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
               + D     L+ S  G  F+    ++I+  + GK  L + +  K+     V     +
Sbjct: 590 EHVLLGDEDKYYLLASDAGYGFVGSYKDMISRNKAGKALLTLPANSKVISPKLVDRSRPE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++             +   +     +    + 
Sbjct: 650 SILAITNEGRMLLFSMEALPQLSKGKGNKIIGIPGERAKAREELLIHLYVVPEDTSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|260752815|ref|YP_003225708.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552178|gb|ACV75124.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 925

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 254/830 (30%), Positives = 384/830 (46%), Gaps = 97/830 (11%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +    ++  VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  E G   G
Sbjct: 35  PSTDTNDISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPG 94

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++KSA+IVGEV+G  HPHGD ++Y +L RL Q +  R PLI GQGNFG++D D  AA 
Sbjct: 95  HPYRKSAKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAM 154

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++  A ++L  +D D VDF   Y+    EP V P++FPNLL NG  GIAVGMAT
Sbjct: 155 RYTEARLSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMAT 214

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+  A  A I +P ISIE L+  + GPDFPTGG ++  +     +Y+ GRG 
Sbjct: 215 NIPPHNLGEVLAACRAYIADPAISIEDLIHLVPGPDFPTGG-VMLGQGGARSAYQNGRGS 273

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R+R+ +EE       IV+TEIPYQ+ KS L+EKIAE    KR+  + DIRDES  + 
Sbjct: 274 IIIRSRYNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREG 333

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   PD+++  ++  +  ++ FP NM  L+ G  P+ M L  I+  ++  R 
Sbjct: 334 VRVVIDLKRDATPDVVLNQLWRHTPAQSSFPANMLALN-GGRPETMSLKDIIAAFVQFRE 392

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------- 419
           EV+ RRS + +     R  +L G++IA  N+DE++ IIRN   P                
Sbjct: 393 EVITRRSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVND 452

Query: 420 ------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              ++L++ QVDAIL LRL  L  +   QI  EL  L     ++
Sbjct: 453 VLPYIKLIEAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISEL 512

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L + ++ +  +  E   V+  F+       RRT       A  A   + +IE+E + 
Sbjct: 513 LEVLRNRERLYEIMVEEFDAVEAQFATP-----RRTQIV---AASDAIEDEDLIEREEMV 564

Query: 522 VVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +++ G+I+                 S +  K+ D++       T   +L  S  GK Y
Sbjct: 565 VTVTHGGYIKRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVY 624

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFI 625
            L    L     +  G  +  L+ L   + + T               +L  ++KG+   
Sbjct: 625 RLKVWRLPEGAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRR 684

Query: 626 VEESEIIANTRKGKTFLKVSSE--EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-M 681
                       GK  ++      +++  V  +   D V +   N K + F+   +    
Sbjct: 685 NSMDAFTNVPSNGKFAIRFEEGDNDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQ 744

Query: 682 SRG-KGVRLQSYKDGGIS-------------------------------------DVICF 703
           SR   GVR  + KDG                                         +  F
Sbjct: 745 SRTSTGVRGITLKDGDEVISLSTLRGFETTVEDRDKYLRSAAWKTDPAPAELPPEKIKAF 804

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  E    +      Y +  +        RGG G    +   R+G  ++S
Sbjct: 805 EEAEDF-ILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERNGSVVAS 853



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 6/139 (4%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +                     + + AF  ++   +L V++ G        E   + R
Sbjct: 775 VEDRDKYLRSAAWKTDPAPAELPPEKIKAFE-EAEDFILTVTANGYGKRTSSHEYRRSNR 833

Query: 637 KGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
            G+    + + E+   VV       GD + +V +  KL+  +++ I    R  +GV + +
Sbjct: 834 GGQGITNIETSERNGSVVASFPAHDGDQLMLVTDQAKLIRTTVNDIRIAGRNTQGVTIFN 893

Query: 692 YKDGGISDVICFKICEGLT 710
             +G           +G  
Sbjct: 894 VAEGEQVVSAARITDDGDD 912


>gi|226946369|ref|YP_002801442.1| DNA topoisomerase IV subunit A [Azotobacter vinelandii DJ]
 gi|226721296|gb|ACO80467.1| DNA topoisomerase IV, A subunit [Azotobacter vinelandii DJ]
          Length = 752

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 276/758 (36%), Positives = 448/758 (59%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  S     + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MHESFDPGLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  + +   D+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLAELGQGTADWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++ +L E+I GPDFPT   IV  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPQATVAQLCEHIPGPDFPTEAEIVTPRAELLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       +V+T +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGTLRMRALYRVEDGD-----VVITALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM+ +F  +D+ET + +N+N++ +   PQV  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVEGLMQHLFATTDLETSYRVNLNIIGLDGRPQVKNLRALLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L+GLLIA+LN+DE+I IIR+ED+PKPV++ RF+
Sbjct: 356 EWLEFRVRTVRRRLQFRLDKVERRLHLLEGLLIAFLNLDEVIRIIRSEDQPKPVLIERFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + L  E++K+  LL S  +    +  E+   
Sbjct: 416 LSEAQADYILDTRLRQLARLEEMKIRGEQEALAKERDKLLGLLGSEARLKKLVRKELLAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +  +     RR+   E + A   +  +  +  EP+TVV+S +GW+R  K H +D +A
Sbjct: 476 AETYGDA-----RRSPIVERAEARALSETEL-LPTEPVTVVLSEKGWVRCAKGHDIDPAA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+ K A    +    + + + G++Y+L A +L S RG GE +   +        
Sbjct: 530 LSYKSGDTFKAAAQGRSNQYAVFIDSSGRSYSLAAHSLPSARGQGEPLTGRLAPPPGAGF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     ++ S  G  F+ +  ++ A  + GK  L + +  ++     +     D
Sbjct: 590 ECVLLPDDEALYVLASDAGYGFVAKGEDLQAKNKAGKALLSLPAGARVMAPRPLGDAGSD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F + ++P++++GKG R+ +        ++  + D +       L  +
Sbjct: 650 WLAAVTSEGRLLLFRVAELPQLAKGKGNRIIAIPGARVASREEYLCDFVVLSERATLQ-L 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R+ +    DL  + G+RGG G+ +P+GF R    
Sbjct: 709 QAGKRTLSLKPADLEHYRGERGGRGNKLPRGFQRVDAL 746


>gi|332998728|gb|EGK18324.1| DNA topoisomerase IV, A subunit [Shigella flexneri VA-6]
          Length = 752

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNARAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|149204038|ref|ZP_01881006.1| DNA gyrase subunit A [Roseovarius sp. TM1035]
 gi|149142480|gb|EDM30525.1| DNA gyrase subunit A [Roseovarius sp. TM1035]
          Length = 899

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 251/830 (30%), Positives = 402/830 (48%), Gaps = 105/830 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 15  SVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKPYRKSARA 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 75  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  ++++ V+F+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 135 PAAYLLADIEKETVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALIDNP++  E L++YI GPDFPTGG ++  R    ++Y  GRG   +RA+   
Sbjct: 195 VVDATLALIDNPDLESEDLIQYIPGPDFPTGG-LMLGRSGARKAYLEGRGSVIIRAKTRT 253

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + I++ EIPYQV K+ +IE+IAE    KRI  +  ++DES  +   V+    R
Sbjct: 254 EEIRKDRYAIIIDEIPYQVNKATMIERIAEAARDKRIEGIAHVQDESDRNGVRVVIELKR 313

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  ++  + M+T F  NM  L+ G  P+ + L   L  ++  R EV+ RR+++
Sbjct: 314 DATAEVVLNQLYRFTPMQTYFGCNMLALN-GGKPEQLTLHRFLSLFITFREEVVARRTAY 372

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------------------- 412
            ++    R  +L GL +A  N+DE++A IR                              
Sbjct: 373 DLRKARERAHVLCGLAVAVSNVDEVVATIRGSMDAAEARQKLMERRWPAGDILPYIALID 432

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L +L   ++  EL +L  + ++  ++L S +
Sbjct: 433 DPSHPANADGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGKIKEYLAILASRE 492

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REV+E+F+       RRT   + S   +    + +IE+E + V +++ G+
Sbjct: 493 RIMQIISDELREVRELFAVP-----RRTEIVDWSGDME---DEDLIEREDMVVTVTSGGY 544

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          K     LS +  K+ D +     A+T  ++L  +T G  Y L    L 
Sbjct: 545 IKRTALADFRAQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKTWRLP 604

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S G+      S+   
Sbjct: 605 LGGRTSKGKAIVNILPIPTGVSIAAIMPVDRPEEDWEDLQIVFATSAGDVRRNALSDFTN 664

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRLQ 690
             R GK  + +    ++         D V +V ++ + + F   ++     R   GVR  
Sbjct: 665 VMRNGKIAMDLPEGVELVNARICGPEDDVMLVTDSGRAIRFPTTEVRVFKGRKSTGVRGI 724

Query: 691 SYKDGGISDVICF-----------------------------KICEG------------- 708
                     +                                  EG             
Sbjct: 725 RLLGDDRVVSMSVIRHFDASADDRAAYLKMRRQLAGAEDDGTSDDEGNADAALSAEQFAE 784

Query: 709 -----LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   +    R   +  +     +  RGG+G        R G  ++S
Sbjct: 785 MQAAENLILTITARGTGKLSSSHDYPVRGRGGMGVQAMDKGMRGGTVVAS 834



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 16/110 (14%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVG 665
           +   +L ++++G   +    +     R G     +    +   +     VT  D + +  
Sbjct: 788 AENLILTITARGTGKLSSSHDYPVRGRGGMGVQAMDKGMRGGTVVASFPVTLEDQIMLAT 847

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
              + +      +P M         S++      V  F    G   +  A
Sbjct: 848 SKGQSIR-----VPVMG-------ISFRSRSAGGVKVFNTGAGEEVVSVA 885


>gi|323168137|gb|EFZ53824.1| DNA topoisomerase IV, A subunit [Shigella sonnei 53G]
          Length = 752

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQSVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|331674565|ref|ZP_08375325.1| DNA topoisomerase IV, A subunit [Escherichia coli TA280]
 gi|331068659|gb|EGI40054.1| DNA topoisomerase IV, A subunit [Escherichia coli TA280]
          Length = 752

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIKDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|170765566|ref|ZP_02900377.1| DNA topoisomerase IV, A subunit [Escherichia albertii TW07627]
 gi|170124712|gb|EDS93643.1| DNA topoisomerase IV, A subunit [Escherichia albertii TW07627]
          Length = 752

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 449/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDEPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPI 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF +TE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPKLMSRFGITETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E + L  E++++ S+L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQNELEKERDQLQSILASERKMNNLLKKELQADAQAYGDE 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 476 -----RRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +    +   LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPLQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|253991000|ref|YP_003042356.1| DNA topoisomerase IV subunit A [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782450|emb|CAQ85614.1| topoisomerase IV subunit A [Photorhabdus asymbiotica]
          Length = 748

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 443/750 (59%), Gaps = 20/750 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEITHDGVERLPLHSFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AEL+L  +    VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLTELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A + L+D P+ ++++L+E++ GPD+PT   I+ S E I + Y+ GRG
Sbjct: 182 TDIPPHNAREVSNALVTLLDKPQSTLDELMEHVKGPDYPTEAEIITSHEDIRKIYKNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAVWSKEDGN-----VVITALPHQVSGAKILEQIASQMRAKKLPMVDDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDVEQVMNHLFATTDLEKSYRVNLNMIGLDNRPTVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RRE + +R + R++ + +R+ +L+GLLIA+LNIDE+I IIR+ED+PKPV+++RF L+E 
Sbjct: 357 FRRETVRKRLNHRLEKVLKRLHVLEGLLIAFLNIDEVIDIIRSEDEPKPVLMARFGLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++K+ ++L S ++    +  EI      +
Sbjct: 417 QTEAILELKLRHLAKLEEMKIRGEQDELAKERDKLQAILGSERKLNTLLKKEIIADAATY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A KA  +  +   EP+T+V+S  GW+RS K H +D + L++K
Sbjct: 477 GDE-----RRSPMRERDEA-KAMSEHDITPSEPVTIVLSEMGWVRSAKGHDIDPAGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + T G++Y+L   +L S RG GE +   + L     +    
Sbjct: 531 AGDSFRGAARGKSNQPVVFIDTTGRSYSLDPRDLPSARGQGEPLTGKLTLPAGATVEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAV 663
           +     K L+ S  G  FI   S+++A  R GK  + +     +   +++     D +  
Sbjct: 591 MASDEQKFLMASDAGYGFICTFSDLVAKNRAGKALITLPENANVMTPLEINNEQDDMLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKD---GGISDVICFKICEGLTWIDSAGRSYN 720
           +    ++L+F +  +P++S+GKG ++ S +      +   +     +    +    R   
Sbjct: 651 ITSTGRMLMFPVADLPQLSKGKGNKIISVQAASGDELLSGLFILPPQSSITLYFGKRKLT 710

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               DL  +  +RG  G+ +P+G  R  + 
Sbjct: 711 LRPEDLQKFRAERGRKGTSLPRGLQRIERV 740


>gi|119776173|ref|YP_928913.1| DNA topoisomerase IV subunit A [Shewanella amazonensis SB2B]
 gi|119768673|gb|ABM01244.1| DNA topoisomerase IV subunit A [Shewanella amazonensis SB2B]
          Length = 756

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 260/757 (34%), Positives = 432/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LNAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSRFSEVLLSELGQGTVDWGVNFDGTMKEPKVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A + LIDNP   +++L+E + GPD+PT   I+   + I + Y 
Sbjct: 181 VGMATDIPPHNARELTRACIELIDNPATELKRLMELVPGPDYPTEAEIITPADEIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E     +  +V++ +P+Q   S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYEME-----NGEVVISALPHQASSSKILEQIAAQMQAKKLPMVTDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+VL P++  +D + LM  +F  +++E  + +N+NV+ +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVLVPRSNRVDVEQLMAHLFATTELEKSYRVNLNVIGLDGRPKVKGLKDMLA 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R E + RR  FR+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RF 
Sbjct: 356 EWLVFRTETVRRRLQFRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK+E   L  E+ K++ +L S ++    I  E+ + 
Sbjct: 416 LSDRQAEAILELKLRHLAKLEEMKIKAEQSELEEERNKLEQILGSERRLKTLIKKELEKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+       +   T Q+  +  EP+TVV+S +GW+R  K H +D  A
Sbjct: 476 AETYGD-----DRRSPLVVRGESRALTEQEL-LPTEPVTVVLSEKGWVRCAKGHDIDAGA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    A    +  + + + + G+A++     L S R  GE I    +L   + +
Sbjct: 530 LSYKAGDGFLCAAQGRSNQQSVFIDSSGRAFSTDTHTLPSARSQGEPITTRFNLAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--- 659
               + +     L+ S  G  F+   +++I+  + GK  L + S  K     +V  D   
Sbjct: 590 EHVLLGEEQHHYLLASDAGYGFVCSFADMISRNKAGKALLSLPSGAKALAPRRVDKDANP 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            +  +    ++L+F +D +P++++GKG ++             +   +     +    + 
Sbjct: 650 SILAITNEGRMLVFGLDALPQLAKGKGNKIIGIPSERAKNREELLIHLHLVPADSAVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKSSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|73916142|gb|AAZ92939.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 788

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 235/726 (32%), Positives = 382/726 (52%), Gaps = 29/726 (3%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGDSAAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E + GPD
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK 285
           FPTG  +V  +  I ++Y  G+G   +R+R  +E    G   IVVTE PY V K+++ E 
Sbjct: 181 FPTGA-LVMGKSGIHKAYETGKGSIALRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEH 239

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
           I  L+  KRI  +  +RDES  +    +    R    ++++ ++F ++ M+T F     +
Sbjct: 240 IVRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGF-NML 298

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
                +P+++ L  IL  ++ H++EV+ RR+ F  +  + R  IL+GLLIA  +IDE+I 
Sbjct: 299 AIQNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIR 358

Query: 406 IIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           IIR  +         +S+F L+E Q  AIL++RLR L  LE  +I+SE D+LLA    + 
Sbjct: 359 IIRASETDAEAQAELMSKFKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLA 418

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L   ++    I  E+ EVK  FS      +RRT    +     +   + +IE+  + +
Sbjct: 419 DILAKPERVSQIIKDELDEVKRKFSD-----KRRTEL--MVGQVLSLEDEDLIEESDVLI 471

Query: 523 VISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +SNRG+I+          K     +     K+ D ++  +   T D +L  +  G+ Y 
Sbjct: 472 TLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYR 531

Query: 575 LPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEE 628
           L    +       +   +  L+ L+ ++ I T    +        L   +  G       
Sbjct: 532 LKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSV 591

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
            E     + G   L +  E+++  V+   GD  + +  +    + F+   +  MSR   G
Sbjct: 592 KEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATG 651

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           V+  + ++G         I +    +    + Y +           RGG G    K   +
Sbjct: 652 VKGVNLREGDTVVGASL-ITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEK 710

Query: 747 SGKFLS 752
           +G    
Sbjct: 711 NGLLAG 716


>gi|209363674|ref|YP_001423529.2| DNA topoisomerase IV subunit A [Coxiella burnetii Dugway 5J108-111]
 gi|207081607|gb|ABS77839.2| topoisomerase IV subunit A [Coxiella burnetii Dugway 5J108-111]
          Length = 753

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/758 (35%), Positives = 439/758 (57%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 3   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 63  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E     +  IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 243 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +       +R +   E   A K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 478 KEKYGD-----KRCSPLMERPIA-KMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 591

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 592 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS------DVICFKICEGLTWID 713
            +A +    +LL+F I ++PE+ +GKG ++       ++        +     +    + 
Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLTLY 711

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           S  R +    +DL  + G+RG  G+ +P+GF +     
Sbjct: 712 SGKRRFTLKPDDLAQFQGERGRRGNKLPRGFRKVDNVA 749


>gi|320184192|gb|EFW59008.1| Topoisomerase IV subunit A [Shigella flexneri CDC 796-83]
          Length = 752

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSLMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|85705334|ref|ZP_01036433.1| DNA gyrase, subunit A [Roseovarius sp. 217]
 gi|85670207|gb|EAQ25069.1| DNA gyrase, subunit A [Roseovarius sp. 217]
          Length = 899

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 252/831 (30%), Positives = 405/831 (48%), Gaps = 107/831 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 15  SVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEGGNTHDKPYRKSARA 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 75  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +++D V+F+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 135 PAAYLLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALI+NP++  E L++YI GPDFPTGG ++  R    ++Y  GRG   +RA+  V
Sbjct: 195 VVDATLALIENPDLESEDLIQYIPGPDFPTGG-LMLGRSGARKAYLEGRGSVIIRAKTRV 253

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + I++ EIPYQV K+ +IE+IAE    KRI  +  ++DES  +   V+    R
Sbjct: 254 EEIRKDRYAIIIDEIPYQVNKATMIERIAEAAREKRIEGISHVQDESDRNGVRVVIELKR 313

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ G  P+ + L   L  ++  R EV+ RR++F
Sbjct: 314 DATAEVVLNQLFRFTPMQTYFGCNMLALN-GGKPEQLTLHRFLSLFIVFREEVVARRTAF 372

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------------------- 412
            ++    R  +L GL +A  N+DE++A IR                              
Sbjct: 373 ELRRARERAHVLCGLAVAVSNVDEVVATIRASADAAEARLKLMERRWPAREILPYIALID 432

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L +L   ++  EL +L  + ++  ++L S +
Sbjct: 433 DPSHPANEDGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGKIKEYLAILASRE 492

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REV+++F+       RRT   + S   +    + +IE+E + V +++ G+
Sbjct: 493 RIMQIISDELREVRDLFAVP-----RRTQIVDWSGDME---DEDLIEREDMVVTVTSGGY 544

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          K     LS +  K+ D +     A+T  ++L  +T G  Y L    L 
Sbjct: 545 IKRTALADFRAQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKTWRLP 604

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S G+      S+   
Sbjct: 605 LGGRTSKGKAIVNILPIPTGVSIAAIMPVDRPEEDWEDLQIVFATSAGDVRRNALSDFTN 664

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRLQ 690
             R GK  + +    ++         D V +V ++ + + F   ++     R   GVR  
Sbjct: 665 VMRNGKIAMDLPEGVELVNARICGPEDDVMLVTDSGRAIRFPTTEVRVFKGRKSTGVRGI 724

Query: 691 SYKDGGISDVIC------------------------------------------------ 702
                     +                                                 
Sbjct: 725 RLLGNDRVVSMSVISHFDASADERAAYLKMRRQLAGADEDAAADDEGNADAAISPERFEE 784

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            ++ E L  +    +   +  +     +  RGG+G        R G  ++S
Sbjct: 785 MQLAENL-ILTITAKGTGKLSSSHDYPVRGRGGMGVQAMDKGMRGGTVVAS 834



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 16/110 (14%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVG 665
           +   +L +++KG   +    +     R G     +    +   +     VT  D + +  
Sbjct: 788 AENLILTITAKGTGKLSSSHDYPVRGRGGMGVQAMDKGMRGGTVVASFPVTLEDQIMLAT 847

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
              + +      +P M         S++      V  F    G   +  A
Sbjct: 848 SKGQSIR-----VPVMG-------ISFRSRSAGGVKVFNTGTGEEVVSVA 885


>gi|241761282|ref|ZP_04759370.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374189|gb|EER63686.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 925

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 254/830 (30%), Positives = 385/830 (46%), Gaps = 97/830 (11%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +    ++  VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  E G   G
Sbjct: 35  PSTDTNDISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPG 94

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++KSA+IVGEV+G  HPHGD ++Y +L RL Q +  R PLI GQGNFG++D D  AA 
Sbjct: 95  HPYRKSAKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAM 154

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++  A ++L  +D D VDF   Y+    EP V P++FPNLL NG  GIAVGMAT
Sbjct: 155 RYTEARLSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMAT 214

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+  A  A I +P ISIE L+  + GPDFPTGG ++  +     +Y+ GRG 
Sbjct: 215 NIPPHNLGEVLAACRAYIADPAISIEDLIRLVPGPDFPTGG-VMLGQGGARSAYQNGRGS 273

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R+R+ +EE       IV+TEIPYQ+ KS L+EKIAE    KR+  + DIRDES  + 
Sbjct: 274 IIIRSRYNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREG 333

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   PD+++  ++  +  ++ FP NM  L+ G  P+ M L  I+  ++  R 
Sbjct: 334 VRVVIDLKRDATPDVVLNQLWRHTPAQSSFPANMLALN-GGRPETMSLKDIIAAFVQFRE 392

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------- 419
           EV+ RRS + +     R  +L G++IA  N+DE++ IIRN   P                
Sbjct: 393 EVITRRSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVND 452

Query: 420 ------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              ++L++ QVDAIL LRL  L  +   QI  EL  L     ++
Sbjct: 453 VLPYIKLIEAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISEL 512

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L + ++ +  +  E   V+  F+       RRT       A  A   + +IE+E + 
Sbjct: 513 LEVLRNRERLYEIMVEEFDAVEAQFATP-----RRTQIV---AASDAIEDEDLIEREEMV 564

Query: 522 VVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +++ G+I+                 S +  K+ D++       T   +L  S  GK Y
Sbjct: 565 VTVTHGGYIKRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVY 624

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFI 625
            L    L     +  G  +  L+ L   + + T               +L  ++KG+   
Sbjct: 625 RLKVWRLPEGAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRR 684

Query: 626 VEESEIIANTRKGKTFLKVS--SEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-M 681
                       GK  ++     ++++  V  +   D V +   N K + F+   +    
Sbjct: 685 NSMDAFTNVPSNGKFAIRFEEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQ 744

Query: 682 SRG-KGVRLQSYKDGGIS-------------------------------------DVICF 703
           SR   GVR  + KDG                                         +  F
Sbjct: 745 SRTSTGVRGITLKDGDEVISLSTLRGFETTVEDRDKYLRSAAWKTDPAPAELPPEKIKAF 804

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  E    +      Y +  +        RGG G    +   R+G  ++S
Sbjct: 805 EEAEDF-ILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERNGSVVAS 853



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 6/139 (4%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +                     + + AF  ++   +L V++ G        E   + R
Sbjct: 775 VEDRDKYLRSAAWKTDPAPAELPPEKIKAFE-EAEDFILTVTANGYGKRTSSHEYRRSNR 833

Query: 637 KGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
            G+    + + E+   VV       GD + +V +  KL+  +++ I    R  +GV + +
Sbjct: 834 GGQGITNIETSERNGSVVASFPAHDGDQLMLVTDQAKLIRTTVNDIRIAGRNTQGVTIFN 893

Query: 692 YKDGGISDVICFKICEGLT 710
             +G           +G  
Sbjct: 894 VAEGEQVVSAARITDDGDD 912


>gi|114564486|ref|YP_752000.1| DNA topoisomerase IV subunit A [Shewanella frigidimarina NCIMB 400]
 gi|114335779|gb|ABI73161.1| DNA topoisomerase IV subunit A [Shewanella frigidimarina NCIMB 400]
          Length = 767

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 260/757 (34%), Positives = 427/757 (56%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVEQMPLRRFTEGAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EPV  P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWSPNFDGTMKEPVTLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV E+  A + LIDNP+  + +L+E++ GPD+PT   I+  R  I   Y 
Sbjct: 181 VGMATDIPPHNVHELVGACIELIDNPKADLARLMEFVPGPDYPTEAEIITPRADIERIYD 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R RA +  E+       IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGKGSIRARAVYSEEQGE-----IVITSLPHQASSGKILEQIANQMQAKKLPMVSDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVIVPRSNRIDCDQLMTHLFATTDLEKSFRVNLNVLGLDGRPKVKGLKQLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  +R+  +  R+ IL+ L++A+LNIDE+I IIR  D+PK  +++RF+
Sbjct: 356 EWLEFRLTTVTRRLQYRLDKVLARLHILEALMVAFLNIDEVIEIIRYNDEPKAELMARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q ++IL L+LR L KLEE++IK E D L AE++K++ LL+S ++    +  E+ + 
Sbjct: 416 LSDKQAESILELKLRHLAKLEEFKIKGEQDELAAERDKLELLLSSERRLKTLVKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   A   T Q+     E +TVV+S++GW+R  K H VD+  
Sbjct: 476 GETYGD-----NRRSPIIERVDAKALTEQEL-TPTESVTVVLSDKGWVRCAKGHDVDVEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS   ++   +    + + + G+A+   +  L S R  GE I    ++     +
Sbjct: 530 LSYKSGDSYLCSVMGKSNQAAVFIDSTGRAFATDSHTLPSARSQGEPITTRFNMAPGATM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
               + +     L+ +  G  FI    ++++  + GK  L + +         +      
Sbjct: 590 QHVLMGEDEQFFLLATDAGYGFICAYPDLVSRNKAGKALLSLPTNALAMQPKLINKTADQ 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG------GISDVICFKICEGLTWID 713
            +  +    ++L+FS+D +P++S+GKG ++             +   +          + 
Sbjct: 650 SLLAITSEGRMLMFSLDALPQLSKGKGNKIIGIPTDRAKNREELLLHLNVVPHNTAVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|332994706|gb|AEF04761.1| DNA topoisomerase IV subunit A [Alteromonas sp. SN2]
          Length = 768

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 260/757 (34%), Positives = 425/757 (56%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMS++G
Sbjct: 1   MSDEIIINRDGVEQLPLRRFTEDAYLNYSMYVIMDRALPHIADGLKPVQRRIIYAMSDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSANAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA++++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEAKLSRFSEVLLDELGQGTVDWTPNFDGTLEEPCVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DN +  +  +LE++ GPD+PT   ++  +  I + Y 
Sbjct: 181 VGMATDIPPHNVRELAYACAMLLDNSKAELSDVLEHVNGPDYPTEAEVITPKADIRKLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +        +  IVVT +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVFH-----EENGDIVVTALPHQASGGKILEQIAGQMQAKKLPMVSDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+++ P++  +D   LM+ +F  +D+E  + +N+N++ +   P+V  L  IL 
Sbjct: 296 SDHENPTRLLITPRSNRIDTAQLMQHLFATTDLEKNYRVNLNMIGLDGRPKVKDLRTILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R+E + RR  +R+  +  R+ IL+GLLIA+LNIDE+I IIR  +KPK  ++SRFS
Sbjct: 356 EWLVYRKETVTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYEKPKQELISRFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK E D L AE++K+ +LL S ++    I  EI   
Sbjct: 416 LSDKQAEAILELKLRHLAKLEEMKIKGEQDELAAERDKLQTLLGSDRRLKTLIKKEILAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   A   + ++  +  E +TVV+S +GW R  K + +D   
Sbjct: 476 AEKYGD-----DRRSPIVERGEAKALSEKEL-VPAESVTVVLSEKGWARCAKGYDIDAEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+ ++  A  L S R  GE +     L   +  
Sbjct: 530 LSYKAGDGYLSSAEGKSNQPAVFMDSSGRTFSCDAHGLPSARSQGEPLTGRFALVGGESF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               +     K LV S  G  F+    ++++  + GK +L +    K+     VT    D
Sbjct: 590 EHVIMASDEAKFLVGSDAGYGFVGTFKDMVSKNKAGKAYLSLPKAAKVMKPKPVTNPESD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
               +    ++L+F +  +P + +GKG +L +              V+          + 
Sbjct: 650 WCLTISNEGRMLLFPLKDLPSLGKGKGNKLINIPGAKAQSREEFVTVLAVVPDGASLKVT 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+   S +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRNMTLSASDLEHYYGERGRRGNKLPRGLQRVDSV 746


>gi|301017285|ref|ZP_07182049.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 69-1]
 gi|300400258|gb|EFJ83796.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 69-1]
          Length = 752

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGTPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 476 -----RRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|300718406|ref|YP_003743209.1| DNA topoisomerase 4 subunit A [Erwinia billingiae Eb661]
 gi|299064242|emb|CAX61362.1| DNA topoisomerase 4 subunit A [Erwinia billingiae Eb661]
          Length = 757

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 272/757 (35%), Positives = 451/757 (59%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L ++  +  +L    EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTQDGAERRALHKFTEEAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+  R  I + Y+
Sbjct: 178 VGMATDIPPHNLREVAKAAIALIDAPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDE
Sbjct: 238 SGRGSVRMRAVWKREDGD-----VVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL 
Sbjct: 293 SNHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLNNRPAVKNLLEILS 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +RR+ + RR   R+  + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF 
Sbjct: 353 EWLIYRRDTVRRRLQHRLDKVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKPVLMSRFE 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQGILASERKMNTLLKKELQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            +++        RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D   
Sbjct: 473 SDLYGD-----DRRSPLREREEA-KAISESELVPSEPVTIVLSQSGWVRSAKGHDIDPGG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    +   ++ + + G++Y L    L S RG GE +   +       +
Sbjct: 527 LSYKAGDSYRAAARGKSNQPVVFVDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGAVM 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S+ G  F+   S++++  R GK  L +    K+   + +  D   
Sbjct: 587 EQVLMEADDQKLLMASNAGYGFVCTFSDLVSRNRAGKALLTLPQNAKVMTPLAIHHDDDL 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWID 713
           +  +    ++L+F +  +P++S+GKG ++ S         +  ++ ++     +    + 
Sbjct: 647 LLAITSAGRMLLFPVGDLPQLSKGKGNKIISIPSAQAASGEDNLAWLLLLT-PQTSVTLH 705

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              R      +DL  +  +RG  G+L+P+G  R  + 
Sbjct: 706 VGKRKLTLKPDDLQKFRAERGRRGTLLPRGLQRIDRV 742


>gi|323971855|gb|EGB67080.1| DNA topoisomerase IV [Escherichia coli TA007]
          Length = 752

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWMPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|28897205|ref|NP_796810.1| DNA topoisomerase IV subunit A [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260879173|ref|ZP_05891528.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898010|ref|ZP_05906506.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901429|ref|ZP_05909824.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|28805414|dbj|BAC58694.1| DNA topoisomerase IV [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086338|gb|EFO36033.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|308094166|gb|EFO43861.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|308106483|gb|EFO44023.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|328471974|gb|EGF42851.1| DNA topoisomerase IV subunit A [Vibrio parahaemolyticus 10329]
          Length = 761

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 277/754 (36%), Positives = 451/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  + ++++++ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T IP+QV  S+L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWHKE-----GSDIVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GW+R  K H VD  +L++
Sbjct: 477 YGD-----DRRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWVRHAKGHDVDAESLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         ++   + L +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSSQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ + +++++  R GK  + + +  ++    +V     D + 
Sbjct: 591 IMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++++GKG ++ +      K+          + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLIALPQGASLTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  GSL+P+G  R  + 
Sbjct: 711 RKLGLKPADLENFRGERGRRGSLLPRGLQRVTRI 744


>gi|165919299|ref|ZP_02219385.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 334]
 gi|165917022|gb|EDR35626.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 334]
          Length = 751

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/758 (35%), Positives = 439/758 (57%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 61  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 121 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 181 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIIAPTAEIRTLYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E     +  IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 241 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 296 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 356 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 416 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +       +R +   E   A K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 476 KEKYGD-----KRCSPLMERPIA-KMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 530 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 590 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS------DVICFKICEGLTWID 713
            +A +    +LL+F I ++PE+ +GKG ++       ++        +     +    + 
Sbjct: 650 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLTLY 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           S  R +    +DL  + G+RG  G+ +P+GF +     
Sbjct: 710 SGKRRFTLKPDDLAQFQGERGRRGNKLPRGFRKVDNVA 747


>gi|291618912|ref|YP_003521654.1| ParC [Pantoea ananatis LMG 20103]
 gi|291153942|gb|ADD78526.1| ParC [Pantoea ananatis LMG 20103]
          Length = 771

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 271/759 (35%), Positives = 442/759 (58%), Gaps = 25/759 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D +S    L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMS
Sbjct: 12  EDLMSE---LTQDGAERLALHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMS 68

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D
Sbjct: 69  ELGLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 128

Query: 123 G-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
              S AA RYTE+R+++ AE++L  + +   D+   ++    EP + P++ PN+L NGT+
Sbjct: 129 DPKSFAAMRYTESRLSKYAEVLLGELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTT 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IP HN++E+ +AA+ALID+P+ S++ LLE + GPDFPT   I+  R+ I +
Sbjct: 189 GIAVGMATDIPPHNLREVAQAAIALIDDPKTSLDALLEIVQGPDFPTEAEIITPRDEIRK 248

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            Y+ GRG  R RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P++ED+
Sbjct: 249 IYQNGRGSVRQRAVWKKEDGE-----VVITALPHQVSGARVLEQIANQMRNKKLPMVEDL 303

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES  +   R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  
Sbjct: 304 RDESDHENPTRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRINLNMIGLDNRPAVKNLLE 363

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EWL  RR+ + RR ++R+  + RR+ IL GLL+A+LNIDE+I IIR ED+PKPV++S
Sbjct: 364 ILSEWLVFRRDTVRRRLNYRLDRVLRRLHILDGLLVAFLNIDEVIHIIRTEDEPKPVLMS 423

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF ++E Q +AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++    +  E+
Sbjct: 424 RFDISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNTLLKKEL 483

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +     F        RR+   E   A   +  +  +  EP+T+V+S  GW+RS K H +D
Sbjct: 484 QADSNNFGD-----DRRSPLREREEAKALSETEL-VPSEPVTIVLSQMGWVRSAKGHDID 537

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            + L +K GDS   A    +   +  + + G++YTL   +L S RG GE +   +     
Sbjct: 538 PAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPG 597

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             +    +     +LL+ S  G  FI   +++I+  R GK  L +    ++   + V   
Sbjct: 598 AVMEQVLMEPEEQRLLMASDAGYGFICTFNDLISRNRAGKALLTLPENARVMTPMAVHHE 657

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTW 711
            D +  + +  ++L+F + ++P+MS+GKG ++ S      +        +          
Sbjct: 658 DDMLLAITQAGRMLMFPVGELPQMSKGKGNKIISIPSADAASGADKLAWLMILPPGSAIT 717

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +    R       +L  +   RG  G+L+P+G  +  + 
Sbjct: 718 LHVGKRKLLLRSEELQKFRADRGRRGTLLPRGLQKIDRV 756


>gi|161830937|ref|YP_001597685.1| DNA topoisomerase IV subunit A [Coxiella burnetii RSA 331]
 gi|161762804|gb|ABX78446.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 331]
          Length = 751

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/758 (35%), Positives = 439/758 (57%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 61  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 121 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 181 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E     +  IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 241 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 296 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 356 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 416 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +       +R +   E   A K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 476 KEKYGD-----KRCSPLMERPIA-KMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 530 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHILPSARGLGDPLTSRLKPASGAHF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 590 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS------DVICFKICEGLTWID 713
            +A +    +LL+F I ++PE+ +GKG ++       ++        +     +    + 
Sbjct: 650 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLTLY 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           S  R +    +DL  + G+RG  G+ +P+GF +     
Sbjct: 710 SGKRRFTLKPDDLAQFQGERGRRGNKLPRGFRKVDNVA 747


>gi|164685899|ref|ZP_01945345.2| DNA topoisomerase IV, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|164601420|gb|EAX33836.2| DNA topoisomerase IV, A subunit [Coxiella burnetii 'MSU Goat Q177']
          Length = 751

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/758 (35%), Positives = 439/758 (57%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 61  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 121 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 181 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E     +  IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 241 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 296 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 356 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 416 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +       +R +   E   A K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 476 KEKYGD-----KRCSPLMERPIA-KMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 530 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 590 VGILMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS------DVICFKICEGLTWID 713
            +A +    +LL+F I ++PE+ +GKG ++       ++        +     +    + 
Sbjct: 650 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLTLY 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           S  R +    +DL  + G+RG  G+ +P+GF +     
Sbjct: 710 SGKRRFTLKPDDLAQFQGERGRRGNKLPRGFRKVDNVA 747


>gi|291455698|ref|ZP_06595088.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213]
 gi|291382626|gb|EFE90144.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213]
          Length = 896

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 216/763 (28%), Positives = 370/763 (48%), Gaps = 27/763 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 39  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 98

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++YD+LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 99  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNLLVDGQGNFGSPGDDPAAAMRYTEC 158

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 159 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 218

Query: 195 NVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ E     +++P+ S E+    L+  I GPDFPTG  I+   + I ++YR GRG  
Sbjct: 219 NMREVAEGVHWALEHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 277

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE++    
Sbjct: 278 TMRAVVNTEEIN-GRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 336

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  ++ W+ H+ 
Sbjct: 337 QRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFIRHWVNHQL 395

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTEN 426
           +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR  +              + + 
Sbjct: 396 DVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMELLDIDQV 455

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR+L ++   +I +E + L  +      +L   ++Q   I  E+ E+   +
Sbjct: 456 QADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDILAKPERQRKIIGDELDEIVGKY 515

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                      +         A     +       +  +     R+       +     +
Sbjct: 516 GDERRTKILPFSGEMNVEDLIAEENVVVTVTHSGFIKRTKADEYRAQHRGGKGIKGTKLR 575

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D +       T + +L  +  G+ Y + A  L  G    +   +  L+    ++ I  
Sbjct: 576 EDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQFAPDESIQA 635

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------EKMKLVVK 655
                 Y+    L++ +  G       +E  +  + G   +++ ++      +++     
Sbjct: 636 VLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAAL 695

Query: 656 VT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-T 710
               D + +V +    L F  +   +  M R   GV+   +++G     +     +    
Sbjct: 696 CNAEDDIILVSKLGMSLKFQANDEQLRPMGRQTAGVQGMKFREGDELLAMDVVWGDSDKD 755

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   + +        L  R G+G    +     G  + +
Sbjct: 756 LFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEGRGSLVGA 798


>gi|319425115|gb|ADV53189.1| DNA topoisomerase IV, A subunit [Shewanella putrefaciens 200]
          Length = 758

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 264/757 (34%), Positives = 433/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R RA + VE     S  I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSLRARAVYTVE-----SGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RFS
Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPKVELMARFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I +E + L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   +   +   T Q+     EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 GETYGD-----NRRSPIVQRHESRALTEQEL-TPSEPVTVVLSEKGWVRCAKGHDIDPLS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K      +      
Sbjct: 590 QHVLMGEEEQCYLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            +  +    ++L+FS+  +P++S+GKG ++             +   +     E    + 
Sbjct: 650 SLLAITNEGRMLLFSLAALPQLSKGKGNKIIGIPSERAKSRDELMTHLQLVPSETSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|82778369|ref|YP_404718.1| DNA topoisomerase IV subunit A [Shigella dysenteriae Sd197]
 gi|81242517|gb|ABB63227.1| DNA topoisomerase IV subunit A [Shigella dysenteriae Sd197]
          Length = 752

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDELIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRCEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHILMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +      +    I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVL-PSQSTLTIHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|29655151|ref|NP_820843.1| DNA topoisomerase IV subunit A [Coxiella burnetii RSA 493]
 gi|29542420|gb|AAO91357.1| topoisomerase IV subunit A [Coxiella burnetii RSA 493]
          Length = 753

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/758 (35%), Positives = 439/758 (57%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 3   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 63  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E     +  IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 243 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +       +R +   E   A K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 478 KEKYGD-----KRCSPLMERPIA-KMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHILPSARGLGDPLTSRLKPASGAHF 591

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 592 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS------DVICFKICEGLTWID 713
            +A +    +LL+F I ++PE+ +GKG ++       ++        +     +    + 
Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLTLY 711

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           S  R +    +DL  + G+RG  G+ +P+GF +     
Sbjct: 712 SGKRRFTLKPDDLAQFQGERGRRGNKLPRGFRKVDNVA 749


>gi|326387736|ref|ZP_08209342.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207782|gb|EGD58593.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370]
          Length = 916

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 245/839 (29%), Positives = 368/839 (43%), Gaps = 88/839 (10%)

Query: 1   MGVD--NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  D   I       E   + + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+
Sbjct: 1   MSDDITTIDPPAPSGEPEFQRIDIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
               E G   G  ++KSARIVG+ +GK HPHGD ++YD+L R+ Q +  R PLI GQGNF
Sbjct: 61  WTSHENGFTAGKPYRKSARIVGDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++D D  A+ RYTEAR+ +VA+ +L  +++D VDF+  Y+  + EP V P++FPNLL N
Sbjct: 121 GSMDPDPPASMRYTEARLAKVADALLADIEKDTVDFQPNYDGAEQEPQVLPARFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GIAVGMAT+IP HN+ E+ +  LA +DNP I +E+L+  I GPDFPT   ++     
Sbjct: 181 GAGGIAVGMATNIPPHNLGEVIDGCLAYMDNPMIELEELIRIIPGPDFPTAP-LILGTAG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             ++Y  GRG   +RAR  VEE  RG     IV+T IPYQV KS L+EKIAE    KRI 
Sbjct: 240 ARKAYTEGRGSIIMRARHTVEEGRRGDSRRSIVLTSIPYQVGKSNLVEKIAEAAKDKRIE 299

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + DIRDES  +   V+    R   PD+++  ++  +  ++ FP    +   G  P+++ 
Sbjct: 300 GISDIRDESNREGVRVVIDLKRDATPDVVLNQLWRNTPAQSNFPA-NMLAIRGGRPELLG 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------ 410
           L  I++ ++  R EV+ RR+ F +     R  IL GL+IA  N+DE++ IIR        
Sbjct: 359 LKDIIESFVRFREEVITRRTKFELMKARDRAHILLGLVIAVTNLDEVVKIIRGSANPALA 418

Query: 411 ------------------------DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
                                   +         + L+E QV AIL+LRL  L  L   +
Sbjct: 419 RERLLAREWPIGEIAPYIRLVEAIEDDALTGTETYRLSEIQVRAILDLRLHRLTALGRDE 478

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I  EL+ L     +  S+L    + +  +  E+  VK  ++                   
Sbjct: 479 IGEELEGLAKAIAEFLSILADRVKLYGVMREELIAVKAAYATPRLSEITAPADGIDDEDL 538

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
                  +       +  +     R+        S +  K+ D++     A T   +L  
Sbjct: 539 IERDDMVVTITLDGYIKRTPLSTFRAQNRGGKGRSGMATKDEDAIATMFVASTHTPVLFF 598

Query: 567 STDGKAYTLPAG---NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
           ST GK Y           +       + LL  L+  + I                 ++  
Sbjct: 599 STAGKVYRQKVWRLPEGGAVTRGRPVVNLLPSLDQGETIAAVLALPEDEAEWGKLHVMFA 658

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK--MKLVVKV-TGDHVAVVGENRKLLIFS 674
           ++KGN               GK  +K    ++  +  V  +  GD V +     K + F 
Sbjct: 659 TAKGNVRRNAMDAFANIPSNGKFAMKFEEGDEDHLIGVALLSEGDDVLLASRQGKAIRFP 718

Query: 675 IDQIPE-MSRG-KGVRLQSYKDGGISDVICF----------------------------- 703
            D + E  SR   GVR  + KDG     +                               
Sbjct: 719 ADDVREFQSRTSTGVRGMALKDGDEVISLSILHRVGVRDQEERDEYLRYAPWKAEKDGEP 778

Query: 704 ---------KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                       +    +      Y +  +        RGG G +      R+G  ++S
Sbjct: 779 TIAAERFAELSEKEQFVLTVCSNGYGKLSSAYEYRRTGRGGQGIVNIDNIERNGLVVAS 837



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK----VTGDHVAVV 664
           +    +L V S G   +    E     R G+  + + + E+  LVV        D + +V
Sbjct: 790 EKEQFVLTVCSNGYGKLSSAYEYRRTGRGGQGIVNIDNIERNGLVVASFPAARADQLMLV 849

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKD-GGISDVICFKICEGLT 710
            +  KL+   +D +  + RG  GVRL +  D   +   +     EG  
Sbjct: 850 TDQAKLIRLPLDSLRVIGRGSAGVRLFNVADNEQVVSAVRLAETEGDD 897


>gi|212217840|ref|YP_002304627.1| DNA topoisomerase IV subunit A [Coxiella burnetii CbuK_Q154]
 gi|212012102|gb|ACJ19482.1| topoisomerase IV subunit A [Coxiella burnetii CbuK_Q154]
          Length = 753

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/758 (35%), Positives = 439/758 (57%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 3   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 63  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E     +  IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 243 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +       +R +   E   A K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 478 KEKYGD-----KRCSPLMERPIA-KMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 591

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 592 VGILMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS------DVICFKICEGLTWID 713
            +A +    +LL+F I ++PE+ +GKG ++       ++        +     +    + 
Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLTLY 711

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           S  R +    +DL  + G+RG  G+ +P+GF +     
Sbjct: 712 SGKRRFTLKPDDLAQFQGERGRRGNKLPRGFRKVDNVA 749


>gi|74313561|ref|YP_311980.1| DNA topoisomerase IV subunit A [Shigella sonnei Ss046]
 gi|73857038|gb|AAZ89745.1| DNA topoisomerase IV subunit A [Shigella sonnei Ss046]
          Length = 752

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 447/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K+A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKVAVKGKSNQSVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|4886575|dbj|BAA77789.1| DNA topoisomerase IV [Vibrio parahaemolyticus]
          Length = 761

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 276/754 (36%), Positives = 451/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  + ++++++ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T IP+QV  S+L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWHKE-----GSDIVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  ++ DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVNCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GW+R  K H VD  +L++
Sbjct: 477 YGD-----DRRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWVRHAKGHDVDAESLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         ++   + L +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSSQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ + +++++  R GK  + + +  ++    +V     D + 
Sbjct: 591 IMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++++GKG ++ +      K+          + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLIALPQGASLTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  GSL+P+G  R  + 
Sbjct: 711 RKLGLKPADLENFRGERGRRGSLLPRGLQRVTRI 744


>gi|254387097|ref|ZP_05002371.1| DNA gyrase subunit A [Streptomyces sp. Mg1]
 gi|194345916|gb|EDX26882.1| DNA gyrase subunit A [Streptomyces sp. Mg1]
          Length = 857

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 226/760 (29%), Positives = 372/760 (48%), Gaps = 26/760 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 3   RIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +
Sbjct: 63  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECK 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  +A  +L+ +DE+ VDF D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP   
Sbjct: 123 LMPLAMEMLRDIDEETVDFTDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPQV 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
                 A      + E   + L+E I GPDFP+G  +V  R+ I E+YR GRG   +RA 
Sbjct: 183 AAGAQWALEHPDASHEELQDALIERIKGPDFPSGA-LVVGRKGIEEAYRTGRGSITMRAV 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLF 314
             VEE+ +   C+VVTE+PYQ     L +KIA+L+   +I  + D+RDE S+   + ++ 
Sbjct: 242 VEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRLVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ +++  +D++T F  NM  L    VP+ + +D  ++ W+ H+ EV+ R
Sbjct: 301 VLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GVPRTLSIDAFIRHWVTHQIEVIVR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E Q +AI
Sbjct: 360 RTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLLEIDEIQANAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L  LE  +I +E D L A+  + + +L S  +Q + ++ E+  + E F     
Sbjct: 420 LEMQLRRLAALERQKIVAEHDELQAKINEYNEILRSESRQRSIVSEELAAIVEKFGDDRR 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                           A     +       V  +     RS K     +     K+ D +
Sbjct: 480 SKLVPFDGDMSMEDLIAEEDIVVTITHGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDLV 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-- 607
                + T   +L  +  G+ Y   A  L        G+ +  L+    ++ I       
Sbjct: 540 DHFFVSTTHHWLLFFTNKGRVYRSKAYELPDAGRDARGQHVANLLAFQPDEKIAQILAIR 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---------EEKMKLVVKVT 657
            Y++   L++ +  G        +  +    G   + +            +++     V+
Sbjct: 600 DYEAAPYLILATKGGLVKKTALKDYDSPRSGGVIAINLRETGADGADGAADELIGAELVS 659

Query: 658 -GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWID 713
             D + ++ +  + + F+     +  M R   GV+  S+++G     +   +  G     
Sbjct: 660 AEDDLLLISKKAQSIRFTATDEALRPMGRATSGVKGMSFREGDELLSMSV-VRPGTFVFT 718

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    Y +        +  RGG+G    K     G  + +
Sbjct: 719 ATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 758


>gi|251796503|ref|YP_003011234.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2]
 gi|247544129|gb|ACT01148.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2]
          Length = 817

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 222/761 (29%), Positives = 387/761 (50%), Gaps = 30/761 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E      L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM +        ++K
Sbjct: 5   EQFLPAYLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSNNTPDKPYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+V+G  HPHGD S+Y+ +VR+AQP+   + LI G GN+G++D D AAA RYTEA
Sbjct: 65  SAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  IL+ +D+  V F+D ++    EPVV PS++PNLL NGTSGI+ G AT IP H
Sbjct: 125 RLSPIAMEILRDIDKRTVQFKDNFDNTTKEPVVLPSRYPNLLVNGTSGISAGFATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           +++E  +A +A++  PE+++E+L+  + GPDFPTGG I+   E I E+Y  G+G   +R+
Sbjct: 185 SLRETIDACIAVMARPEMTVEELMGIVKGPDFPTGG-IIMGEEGIREAYTTGKGRIYIRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E+V  G   I +TEIPYQV KSRL+  +  + + K++  + ++RDES  +   ++ 
Sbjct: 244 KVEIEDVRGGRQQITITEIPYQVVKSRLVSAMENIRLEKKVEGISEVRDESGRNGLRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + ++  +   +D++  +  NM  +   + PQ + +  IL  ++ H++EV+  
Sbjct: 304 ELKKEADANGILAYLLKKTDLQVTYNFNMVAIV-NKAPQQLGIKQILNAYINHQKEVVTH 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  +++GL+ A   +DE+IA I+        +  +V+++  +E Q DAI
Sbjct: 363 RTQYELEKAEERAHVVEGLVKALNILDEVIATIKASKNRADAQNNLVAKYGFSERQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+L  L  LE   ++ E      +   + S+L S K+    I  E+ E++E +     
Sbjct: 423 LTLQLYRLTNLEITSLEKEWKETQKKIAYLRSILESEKKLLGVIKDELTEIREKYG---- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-----DLSALHFK 546
              RR++       +     + M++ E + V +S  G+++     S      DL     K
Sbjct: 479 -IDRRSSIR-GEVEELKVNLEVMVQSEDVIVTLSEEGYMKRTSMLSFTRSGGDLQTAGVK 536

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVT 604
           EGD++      +T D +LL +  G+ Y LP   +   +      A+  ++ +  +  IV 
Sbjct: 537 EGDAISSVYEVNTIDNLLLFTRKGQYYMLPVHQIPEFKWKDTGTAVVNIVPIPKDDSIVA 596

Query: 605 AFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                        L+ V+ +      E  E +          KV+  +++  V    G  
Sbjct: 597 IIPVKDFNLPGASLVFVTKRAQVKRTELKEYMTTRSTAIAAAKVAEGDEVIRVTLSEGTK 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V +    + FS  ++  M R   GVR    ++        +   +    +      
Sbjct: 657 QLLLVSKLGMSIRFSEQEVNAMGRVAAGVRGMQLREDDELIAAEWVADDEGEVLVVTDLG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLV--PKGFPR---SGK-FLSS 753
           Y +    L   L  RGG G      K   R   +G   +++
Sbjct: 717 YAKRTLLLDYPLQGRGGKGVQTFEFKEGKRVKPNGSALVAA 757


>gi|146291880|ref|YP_001182304.1| DNA topoisomerase IV subunit A [Shewanella putrefaciens CN-32]
 gi|145563570|gb|ABP74505.1| DNA topoisomerase IV subunit A [Shewanella putrefaciens CN-32]
          Length = 758

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 263/757 (34%), Positives = 433/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R RA + VE     S  I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSLRARAVYTVE-----SGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RFS
Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPKVELMARFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I +E + L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   +   +   T Q+     EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 AETYGD-----NRRSPIVQRHESRALTEQEL-TPSEPVTVVLSEKGWVRCAKGHDIDPLS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K      +      
Sbjct: 590 QHVIMGEEEQCYLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            +  +    ++L+FS+  +P++S+GKG ++             +   +     +    + 
Sbjct: 650 SLLAITNEGRMLLFSLAALPQLSKGKGNKIIGIPSERAKSRDELMTHLQLVPSDTSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|254994833|ref|ZP_05277023.1| DNA gyrase subunit A [Anaplasma marginale str. Mississippi]
          Length = 902

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 240/834 (28%), Positives = 389/834 (46%), Gaps = 95/834 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   V  VS+   LE  YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    +
Sbjct: 1   MSGGVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+AR+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  +L  +DED VDFR  Y+E + EPV+ P++FPNLL NG  G+AVGM+T+IP
Sbjct: 121 EARLSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+ +A +A I+ PEI++++L+  I GPDFPTGG ++     I  ++  GRG   V
Sbjct: 181 SHNLGEVVDACVAYIERPEITLDELMAIIPGPDFPTGG-VIMGDAGIRSAFASGRGTIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R R   EE+  G   I++ EIPYQV K++L+E+I EL+  K+I  + D+RDES +    V
Sbjct: 240 RGRTHTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R +D  +++  +  L+ + T F +N  VL     P+VM L  I+  ++  R+EV+
Sbjct: 300 AIELKRQVDSQVVLNQLLGLTPLRTSFSINTLVL-ENNKPRVMSLPEIIATFVDFRKEVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------- 415
            RR+ FR++ I  +  +  G+ IA LNIDE+++II++                       
Sbjct: 359 VRRTRFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIR 418

Query: 416 ------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                       V    + LT  QV AIL +RL+ L  LE+ ++++EL++++A   +   
Sbjct: 419 NMIELVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTK 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L++     + +   + + K   +K  +    ++     + +     +  +       V 
Sbjct: 479 ILSTDSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVK 538

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-- 581
                  R+ K       A   KE D         T   +L  S  GK Y L    L   
Sbjct: 539 RVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLG 598

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIA 633
                G ++  +  L+  + I +             +   ++  ++ GN      S+   
Sbjct: 599 EPSSRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQY 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQ 690
               GK  + ++  +++         DHV +     K + F++  + +   R   GVR  
Sbjct: 659 VPSSGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAI 718

Query: 691 SYKDGGISDVICFKIC-------------------------------------------- 706
               G     +                                                 
Sbjct: 719 RLSAGDQVISMSVLHGIEASSELKESYLKIPVEARVAASHSGVVSDEVAPMLEEHTIERE 778

Query: 707 -------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                       +      + +  +     +  RGGVG +      R+G  ++S
Sbjct: 779 QFLEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVVAS 832



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
           S   +L V+  G        E    +R G   + +     +   +        D V ++ 
Sbjct: 786 SEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVVASFPVSQTDQVMLIT 845

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +  KL+  ++  I  + R  +GV L   + G     +   + 
Sbjct: 846 DKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVD 887



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY----KDGGISDVICFKICEGLT 710
             +   +  V EN      S  +    SRG GV + +     ++G +  V  F + +   
Sbjct: 784 ACSEQFILTVTENGFGKRTSAYEYRITSRG-GVGVVNILTTVRNGNV--VASFPVSQTDQ 840

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    +            +  R   G  + K   +  K +S
Sbjct: 841 VMLITDKGKLIRIAVTDIRVVGRSTQGVTLFK-TEKGEKVVS 881


>gi|209696077|ref|YP_002264007.1| DNA topoisomerase IV subunit A [Aliivibrio salmonicida LFI1238]
 gi|208010030|emb|CAQ80353.1| topoisomerase IV subunit A [Aliivibrio salmonicida LFI1238]
          Length = 756

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 276/754 (36%), Positives = 435/754 (57%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  E V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII AMSE+GL  
Sbjct: 2   SAEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIFAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+++++ A+++L  + +  VD++  ++    EP + P++ P++L NG  GIAVGM
Sbjct: 122 AMRYTESKLSKFADVLLGEISQGTVDWQPNFDGTMKEPKILPARLPHILLNGIMGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  A + L+DNP+  +++++ +I GPD+PT   I+ S   I + Y  GR
Sbjct: 182 ATDIPPHNVREVANATVHLLDNPKADLDEVMNFIQGPDYPTEAEIITSHSDIKKIYSTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  S+L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSVKMRAVWHKEGSD-----IVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  ++ + LM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRIEAEPLMNHLFASTDLEKSFRVNLNMIGLDLRPQVKGLVSILNEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + +R   R+  I  R+ IL GLL AYLNIDE+I IIR ED PK  +++RF LT 
Sbjct: 357 EFRRTTVRKRLQHRLDKILARLHILDGLLAAYLNIDEVIEIIRTEDDPKHELMTRFDLTA 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L KLEE +I+ E D L  E+++++ LL S ++    I  EI    E 
Sbjct: 417 IQAEAILEIKLRQLAKLEEIKIRGEQDELAKERDQLEKLLGSERRLSTLIKKEILADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A KA  ++ +I  E ITV++S++GWIR  K H VD + L+F
Sbjct: 477 FGD-----DRRSPLIERDEA-KAMTERDLIPSEAITVILSDKGWIRHAKGHEVDPTTLNF 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD      H  +    + +  +G++Y L +  L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLTHAHGKSNAPAVFIGNNGRSYALESHTLPSARSQGEPITGRLNITAGSQITHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGDHVA 662
            + +     L+ S  G  F+ + S++++  + GKT L +     +     V  +  D + 
Sbjct: 591 VMGEEDQTWLISSDAGYGFVCKGSDLLSKNKNGKTLLTLPDNSLVMNPETVSDLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++ +GKG ++ +      K           + +G T  + +  
Sbjct: 651 AITNEGRMLLFPIKDLPQLGKGKGNKIINIPAARSKSRDEFLSYLLPLPQGATITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R      +DL  + G+RG  GSL+P+G  R  + 
Sbjct: 711 RKLGLKPSDLDNFRGERGRRGSLLPRGLQRVTRI 744


>gi|255513420|gb|EET89686.1| DNA gyrase, A subunit [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 804

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 233/750 (31%), Positives = 388/750 (51%), Gaps = 16/750 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+   S+   ++  Y+ YA+S I  RA+PD RDG KP  RRI++AM  +        
Sbjct: 1   MAENIVENSIENEMQSSYIDYAMSVIVGRALPDARDGLKPAQRRILYAMYRLNNLHDQQT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VGEVIGK HPHGD + Y++LVR+AQ F   + L+ GQGN G++DGD  AA RYT
Sbjct: 61  KKSARVVGEVIGKYHPHGDMAAYETLVRMAQDFSMNHMLVEGQGNMGSVDGDPPAAQRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+ ++AE +L  +D+++V F   ++  ++EPVV PSK PNL+ NG+SGIAVG+AT+I 
Sbjct: 121 EVRLRKIAEEMLVDMDKESVPFMPNFDNTETEPVVLPSKVPNLMINGSSGIAVGVATNIL 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+C A  A +DN EI+ ++LL Y+ GPDFPTGGI+      ++ESY  GRG   +
Sbjct: 181 PHNLREVCSAIAAYLDNMEITPQELLNYVKGPDFPTGGIVFYDGR-LIESYIKGRGSVTI 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR  +E+  RG   IV+ EIPY V K+ LIEKI  L+  + I  + D+RDES +    +
Sbjct: 240 RARVSIEKEKRG-ERIVINEIPYTVNKASLIEKIGNLVKDRVIEGISDLRDESDKKGIRI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                 + +PD ++ +++  + ++   P+ MNV  +G     + +  ++K ++ HR  V+
Sbjct: 299 SIELKANTNPDYVLNALYKHTQLQITMPV-MNVAVLGNRLLNLNIRDMIKIFVEHRFGVV 357

Query: 373 FRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             R+++ ++  ++R  I+ GL+I      N+  II    N    K  +++++ +TE Q  
Sbjct: 358 INRTNYDLRIANQRKHIVDGLIIATGDIDNVVAIIRGSANSSGAKEALMAKYGITEAQAA 417

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE   +K+E + L       +S+L S ++ +  I  E +E+ E +   
Sbjct: 418 AILDMKLSKLTNLEVNNLKAEKEELENSINYYNSVLGSKEKVYQIIKDETKEIAEKYGID 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                  +   E+   D    + ++I   +   +        ++       + ++  KEG
Sbjct: 478 RRTAIETSELVEIENEDLIKDEDSIIILTKDGYMKRLPMDVYKNQGRGGRGVISIDLKEG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLP--AGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D +K  +   T D +L++++ G+ Y L             G+A   LI +   + I    
Sbjct: 538 DFVKQVVRCMTKDYLLVITSAGRVYWLKGYVVPEGGRYAQGKAAVNLISIAEGERIEQII 597

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK-VTGDHVAV 663
                    L+  + +G     +          G   +K++ ++ +  V     G +V +
Sbjct: 598 NTRDFSGKNLIFATRRGRIKSTKAELFSRPRANGIRAIKLNEDDIVVGVCLSTGGSNVFL 657

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNR 721
              N K + F    +  M R   GVR    K +  + DV+     +    I    R Y +
Sbjct: 658 ATRNGKAIRFMESDLRHMGRVASGVRGIRLKPNDELVDVVVADPKKN--IITITERGYGK 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +       L +RGG G +  K   ++GK +
Sbjct: 716 ATLLERYRLQRRGGGGVINLKVTEKTGKVV 745



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 69/213 (32%), Gaps = 9/213 (4%)

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
               ++      + +  +       +  +        +++   + A+   E D +     
Sbjct: 591 ERIEQIINTRDFSGKNLIFATRRGRIKSTKAELFSRPRAN--GIRAIKLNEDDIVVGVCL 648

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           +     + L + +GKA      +L        +    I L  N ++V   V D    ++ 
Sbjct: 649 STGGSNVFLATRNGKAIRFMESDLRHMGRVA-SGVRGIRLKPNDELVDVVVADPKKNIIT 707

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLI 672
           ++ +G              R G   + +   EK   VV+V      D+V +       + 
Sbjct: 708 ITERGYGKATLLERYRLQRRGGGGVINLKVTEKTGKVVRVLDGEQDDNVIIFNSKGLSIR 767

Query: 673 FSIDQIPEMSR-GKGVRLQSYK-DGGISDVICF 703
           F+ + I    R   GVRL   + D  + D    
Sbjct: 768 FNANAIRVTGRNASGVRLMKLEADAKVVDAQIV 800


>gi|110835354|ref|YP_694213.1| DNA topoisomerase IV subunit A [Alcanivorax borkumensis SK2]
 gi|110648465|emb|CAL17941.1| DNA topoisomerase IV, A subunit [Alcanivorax borkumensis SK2]
          Length = 745

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 275/752 (36%), Positives = 439/752 (58%), Gaps = 25/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  ++  L+   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A +
Sbjct: 1   MADEFESFPLKEYTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKNTAKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+++   AE++L  + +  V++   ++    EP + P++ PN+L NGT+GIAVGM+T I
Sbjct: 121 TESKLAPYAEVLLSELGQGTVEWLPNFDGTMDEPKLLPARLPNVLLNGTTGIAVGMSTDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+  A + L+ +P  S++ L++YI GPDFPT   ++     I+  Y  G+G  +
Sbjct: 181 PPHNLREVANACIHLLKDPGASLDDLMQYIQGPDFPTEAEVITPINDIIRMYAQGKGSLK 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
            RA +  EE       IVVT +PYQV  ++++E+IA+ +  K++P++ D+RDES  +   
Sbjct: 241 QRAVYEREEGD-----IVVTALPYQVSGAKVLEQIADQMNKKKLPMVSDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N+N++ +   PQV  LD IL EWL  R 
Sbjct: 296 RLVITPRSNRVDVEQLMSHLFASTDLEKNYRVNLNMIGIDGRPQVKSLDMILNEWLQFRM 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR   R+  +  R+ IL+GLL A+LNIDE+I IIR ED PKPV++ RF +++ Q +
Sbjct: 356 VTVRRRLQHRLDKVLERLHILEGLLAAFLNIDEVIHIIRTEDAPKPVLMERFGVSDRQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E+E +++ L S  +    +A E+++  E +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELNEEREYLETTLGSMAKMKKLVAKELKDDAEKYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  ++  +PITVV+S +GW+R+ K H VD+  L +K GD
Sbjct: 475 ----DRRSPLVEREDA-KALDESDLLSADPITVVLSEKGWVRAAKGHEVDVEGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K      +   +  + + G+ Y+LPA  L S RG GE +   +        + A +  
Sbjct: 530 KYKACAKGKSNQSVCFIDSTGRTYSLPAHTLPSARGQGEPLSGRVSPPSGASFMAAVMGK 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---VTGDHVAVVGE 666
                L+ +  G  F+V  ++++AN + GKT L V    ++         T D +A+V  
Sbjct: 590 DKDAYLMSTDAGYGFVVRYADLLANKKAGKTVLNVPKGARVLPPQPIASTTDDLIALVSN 649

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS-------DVICFKICEGLTWIDSAGRSY 719
             +LL+F + ++PEM RGKG ++ S     ++       DV      + LT + +  R  
Sbjct: 650 EGRLLVFPVSELPEMVRGKGNKMMSIPGARVADRVEFVQDVQVVGPNDALT-LYAGKRHL 708

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               NDL  + G+RG  G+ +P+GF       
Sbjct: 709 TLKANDLEHYYGERGRRGAKLPRGFQNVDAMA 740


>gi|212211891|ref|YP_002302827.1| DNA topoisomerase IV subunit A [Coxiella burnetii CbuG_Q212]
 gi|212010301|gb|ACJ17682.1| topoisomerase IV subunit A [Coxiella burnetii CbuG_Q212]
          Length = 753

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/758 (35%), Positives = 439/758 (57%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 3   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 63  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E     +  IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 243 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +       +R +   E   A K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 478 KEKYGD-----KRCSPLMERPIA-KMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHILPSARGLGDPLTSRLKPASGAHF 591

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 592 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS------DVICFKICEGLTWID 713
            +A +    +LL+F I ++PE+ +GKG ++       ++        +     +    + 
Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPSRVANREEYCVALAVLHEKSSLTLY 711

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           S  R +    +DL  + G+RG  G+ +P+GF +     
Sbjct: 712 SGKRRFTLKPDDLAQFQGERGRRGNKLPRGFRKVDNVA 749


>gi|304391773|ref|ZP_07373715.1| DNA gyrase, A subunit [Ahrensia sp. R2A130]
 gi|303296002|gb|EFL90360.1| DNA gyrase, A subunit [Ahrensia sp. R2A130]
          Length = 941

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 260/860 (30%), Positives = 409/860 (47%), Gaps = 118/860 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D  SN   +V    + +S+   +   YL YA+S I  RA+PD+RDG KPVHRRI++AM
Sbjct: 22  GGDGASNDGAIVPSAHENISIVDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 81

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            EMGLD   +++KSA ++GEV+GK HPHGD S+YD+LVR+AQ F  R  LI GQGNFG+I
Sbjct: 82  HEMGLDHTKSYRKSAAVIGEVMGKYHPHGDSSIYDALVRMAQDFAMRQMLIDGQGNFGSI 141

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ ++++++L  +D++ VDF+  Y+    EP+V P+++PNLL NG  
Sbjct: 142 DGDKPAAMRYTECRLARISDVLLDDIDKETVDFQANYDGSQREPMVLPARYPNLLVNGAG 201

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  LA+ID P+I + +L+E I GPDFPTGG+I+  R  I  
Sbjct: 202 GIAVGMATNIPPHNLGEVIDGCLAMIDKPDIELAELMELIPGPDFPTGGMIL-GRAGIKS 260

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R +  +E  G     I++ E+PYQV K+ ++EKIAEL+  KRI  +  +
Sbjct: 261 AYETGRGSVIMRGKAHIETSGSDREAIIINEVPYQVNKASMVEKIAELVRDKRIEGISAV 320

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      V+    R    D+++  ++  + +++ F  N+  L+ G  P+ M L  +L
Sbjct: 321 RDESDRQGYRVVIEVKRDAVADIVLNQLYRYTPLQSSFGCNLVALN-GGKPEQMNLVDML 379

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------- 412
           + ++  R EV+ RR+ F +  +  R  +L GL IA  NIDE+IA+IR             
Sbjct: 380 RAFVGFREEVVTRRTKFLLNKVRIRAHVLVGLAIAVANIDEVIALIRKAPDPATARAQLM 439

Query: 413 --------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                +      ++L+E Q  AIL+LRL+ L  L   +I  EL+
Sbjct: 440 ERRWPAKDVAPLIALIDDPRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIADELN 499

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            + AE      +L+S  +  + +  E+ EV+E F+       RRT   +          +
Sbjct: 500 LIGAEIADYLDILSSRARVLDIVRTELGEVREEFANP-----RRTEIIDSGYEHD---DE 551

Query: 513 AMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +++ G+I+ +               S +  K+ D +      +T   +L
Sbjct: 552 DLIAREEMVVTVTHGGYIKRVPLAAYRAQARGGKGRSGMSTKDEDFVTRLFVVNTHTPVL 611

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             ST G AY L    L     +G G+A+  L+ L   + I T               ++ 
Sbjct: 612 FFSTRGIAYKLKVWKLPLAQPQGRGKAMVNLLPLQAGETITTIMPLPEDEGSWDSLDVMF 671

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSS-EEKMKLVVKVT-GDHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    + +  V   +  D V +       + F 
Sbjct: 672 ATTRGTVRRNKLSDFVQVNRNGKIAMKLDDENDGIIGVEVCSASDDVLLTSSAGYGIRFP 731

Query: 675 IDQIPEM-SRGK-GVRLQSY--------------------------------------KD 694
           +D +    SR   GVR                                           D
Sbjct: 732 VDDVRVFNSRNSVGVRGIRMGASDHVISMAIMRGFAATPEERVSYIKQASALRRAASADD 791

Query: 695 GGISDVICFKICEGLTW-------------------IDSAGRSYNRSENDLLGWLGKRGG 735
           G  +D+      E +T                    +    + Y +  +        RGG
Sbjct: 792 GEDADLDVVADDEEVTVASSLPEERYIEMGAAEQFILTITDQGYGKRSSSYDFRKSGRGG 851

Query: 736 VGSLVPKGFP--RSGKFLSS 753
            G  V         G+ + +
Sbjct: 852 KGIKVTDVSKEGEIGQLVGA 871



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEE--KMKLVVKVTG-D 659
           +  +   +L ++ +G        +   + R GK  +KV       E  ++     V   D
Sbjct: 820 MGAAEQFILTITDQGYGKRSSSYDFRKSGRGGKG-IKVTDVSKEGEIGQLVGAFPVEDSD 878

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            + +V  + +L+   +D I   SR  KGVR+           +
Sbjct: 879 QIMLVSNSGQLIRVPVDGIRFASRSTKGVRVFRTAKDESVVAV 921


>gi|326629208|gb|EGE35551.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 760

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 268/755 (35%), Positives = 449/755 (59%), Gaps = 25/755 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               L+ +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+
Sbjct: 4   EDPLLMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLN 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSA 126
             A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S 
Sbjct: 64  ATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVG
Sbjct: 124 AAMRYTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  G
Sbjct: 184 MATDIPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG  R+RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES 
Sbjct: 244 RGSVRMRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESD 298

Query: 307 EDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW
Sbjct: 299 HENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEW 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           LA RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++
Sbjct: 359 LAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGIS 418

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   +
Sbjct: 419 ETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSD 478

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L+
Sbjct: 479 AYGD-----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           +K GDS K A+   +   ++ + T G++Y +    L S RG GE +   + L     +  
Sbjct: 533 YKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEH 592

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV- 663
             +     KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  + 
Sbjct: 593 MLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLL 652

Query: 664 -VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSA 715
            + +  ++L+F +D +P++S+GKG ++ +         D G++ +        LT     
Sbjct: 653 AITQAGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVG 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R       +L   +G+RG  G+ + +G  R  + 
Sbjct: 712 KRKIKLRPEELQKVVGERGRRGT-LMRGLQRIDRI 745


>gi|171913702|ref|ZP_02929172.1| DNA gyrase, A subunit [Verrucomicrobium spinosum DSM 4136]
          Length = 891

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 210/792 (26%), Positives = 363/792 (45%), Gaps = 56/792 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+N+K +++   L+  +L Y++S I  RA+PD+RDG KP  RRI++AM E+ L     
Sbjct: 1   MSEDNIKPINVEEELKGSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMHELSLYPPKK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             K A+I G+  G  HPHG+  +Y +LV +AQP+  R PL+  QGNFG+++GD  AA RY
Sbjct: 61  HMKCAKICGDTSGNYHPHGEAVIYPTLVNMAQPWSMRDPLVHPQGNFGSVEGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +   ++  ++++ VDF   Y+E  +EPVVFP+ FPNLL NG +GIAVGMAT++
Sbjct: 121 TEARLTHLGGHLMDDMEKETVDFVPNYDERLTEPVVFPAAFPNLLVNGGTGIAVGMATNL 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++EI +   A IDNPEI+++ L++Y+ GPDFPTG  ++     I + +  G G  R
Sbjct: 181 PPHNLREIVDGICAQIDNPEITLQGLMQYVRGPDFPTGCTLL-GTAGIRDYFETGHGSLR 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R    + E G     I++T IPY V ++ L ++I EL   K IP +  IRDES E+ R+
Sbjct: 240 IRGHAEISETGTK-PQIIITAIPYGVNRAELCKRIGELASEKIIPEVTAIRDESDENTRV 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  +  +  P +++ +++  + +ET F ++M  +   R P+++ L   +  ++ HRREV
Sbjct: 299 VVDLRREAR-PQVVLNNLYKQTSLETTFSVHMLAID-NRRPRLLSLKDAISCYIEHRREV 356

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------- 415
           + RR+ + ++  +   E L+ LL+A   +D+ I +IR                       
Sbjct: 357 IIRRTKYLLKQAEIDAEKLEALLLALSQLDDFIKMIRTASSRDEAESRIKAYTFTLEAAQ 416

Query: 416 -----------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                      +   R+  T+ QV  IL+LRL  L  LE  +++++ + LL     +  +
Sbjct: 417 SLGILIRSQPSIRSGRYVFTDLQVKHILDLRLYQLTALERTKLQADYEALLNTITDLMDI 476

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L    +    I  E+  ++  +                     A  +  +       V  
Sbjct: 477 LAKESRVLTIIKDELGNIRAKYGTERLTKIEAAEGEINIEDLIANERNIVTITHRGFVKR 536

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLK-------IALHAHTTDRILLLSTDGKAYTLPA 577
           +     R+       L  +  +E                A   D ++  +  G+ Y    
Sbjct: 537 TLASEFRTQARGGKGLKGMETREAAGEDDAADFVEHLFAASAHDYLMFFTNTGRVYVERV 596

Query: 578 GNLLSGRGHGE--AIQLLIDLNHNQDIVTAF-----------VYDSTCKLLVVSSKGNAF 624
             +      G+  +I+ L++L   + I               V+ S   +L  +  G   
Sbjct: 597 YQVPEMARTGKGRSIKNLLNLRAEEKIAAVLRLEADSDHDEGVWRSDRFVLFATKDGTVK 656

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
             E ++     + G   +K+     +  V+   G   + +V      +      I  M R
Sbjct: 657 KTELADFKNIRKDGIIAVKLDEGNDLIQVILTNGSSEICLVTSEGMCVKCEETDIRPMGR 716

Query: 684 -GKGVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
              GV     + G    V+    + E    +  +     +           RG  G    
Sbjct: 717 AAAGVMGI--RPGETDHVVSLTAVDETAQLLVVSENGLGKRTPFEEYRKTNRGAKGVTTM 774

Query: 742 KGFPRSGKFLSS 753
               ++G  +++
Sbjct: 775 NVTEKTGNVVAA 786



 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 68/195 (34%), Gaps = 6/195 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EG+ L   +  + +  I L++++G        ++  
Sbjct: 654 TVKKTELADFKNIRKDGIIAVKLDEGNDLIQVILTNGSSEICLVTSEGMCVKCEETDIRP 713

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKT 640
                 A  + I       +V+    D T +LLVVS  G        E     R  KG T
Sbjct: 714 MGRAA-AGVMGIRPGETDHVVSLTAVDETAQLLVVSENGLGKRTPFEEYRKTNRGAKGVT 772

Query: 641 FLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            + V   +   +  +     D + ++  + + +   +  I +  R  +GV+L +  +G  
Sbjct: 773 TMNVTEKTGNVVAAMAVHEDDELMLMTSSGQSVRIRVADIRQTGRNAQGVKLMNLSEGET 832

Query: 698 SDVICFKICEGLTWI 712
              +   I +    +
Sbjct: 833 IQDVAKVIPDDEEKV 847


>gi|255004094|ref|ZP_05278895.1| DNA gyrase subunit A [Anaplasma marginale str. Virginia]
          Length = 902

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 239/834 (28%), Positives = 388/834 (46%), Gaps = 95/834 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   V  VS+   LE  YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    +
Sbjct: 1   MSGGVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+AR+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  +L  +DED VDFR  Y+E + EPV+ P++FPNLL NG  G+AVGM+T+IP
Sbjct: 121 EARLSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+ +A +A I+ PEI++++L+  I GPDFPTGG ++     I  ++  GRG   V
Sbjct: 181 SHNLGEVVDACVAYIERPEITLDELMAIIPGPDFPTGG-VIMGDAGIRSAFASGRGTIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R R   EE+  G   I++ EIPYQV K++L+E+I EL+  K+I  + D+RDES +    V
Sbjct: 240 RGRTHTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R +D  +++  +  L+ + T F +N  VL     P+VM L  I+  ++  R+EV+
Sbjct: 300 AIELKRQVDSQVVLNQLLGLTPLRTSFSINTLVL-ENNKPRVMSLPEIIATFVDFRKEVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------- 415
            RR+ FR++ I  +  +  G+ IA LNIDE+++II++                       
Sbjct: 359 VRRTRFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIR 418

Query: 416 ------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                       V    + LT  QV AIL +RL+ L  LE+ ++++EL++++A   +   
Sbjct: 419 NMIELVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTK 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L++     + +   + + K   +   +    ++     + +     +  +       V 
Sbjct: 479 ILSTDSLLMDIVKQGLLDAKAKLATPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVK 538

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-- 581
                  R+ K       A   KE D         T   +L  S  GK Y L    L   
Sbjct: 539 RVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLG 598

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIA 633
                G ++  +  L+  + I +             +   ++  ++ GN      S+   
Sbjct: 599 EPSSRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQY 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQ 690
               GK  + ++  +++         DHV +     K + F++  + +   R   GVR  
Sbjct: 659 VPSSGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAI 718

Query: 691 SYKDGGISDVICFKIC-------------------------------------------- 706
               G     +                                                 
Sbjct: 719 RLSAGDQVISMSVLHGIEASSELKESYLKIPVEARVAASHSGVVSDEVAPMLEEHTIERE 778

Query: 707 -------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                       +      + +  +     +  RGGVG +      R+G  ++S
Sbjct: 779 QFLEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVVAS 832



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
           S   +L V+  G        E    +R G   + +     +   +        D V ++ 
Sbjct: 786 SEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVVASFPVSQTDQVMLIT 845

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +  KL+  ++  I  + R  +GV L   + G     +   + 
Sbjct: 846 DKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVD 887



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY----KDGGISDVICFKICEGLT 710
             +   +  V EN      S  +    SRG GV + +     ++G +  V  F + +   
Sbjct: 784 ACSEQFILTVTENGFGKRTSAYEYRITSRG-GVGVVNILTTVRNGNV--VASFPVSQTDQ 840

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    +            +  R   G  + K   +  K +S
Sbjct: 841 VMLITDKGKLIRIAVTDIRVVGRSTQGVTLFK-TEKGEKVVS 881


>gi|56416621|ref|YP_153695.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries]
 gi|56387853|gb|AAV86440.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries]
          Length = 908

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 240/835 (28%), Positives = 389/835 (46%), Gaps = 95/835 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            +   V  VS+   LE  YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    
Sbjct: 6   QMSGGVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKP 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK+AR+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG+IDGD  A+ RY
Sbjct: 66  YKKAARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRY 125

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+++ A  +L  +DED VDFR  Y+E + EPV+ P++FPNLL NG  G+AVGM+T+I
Sbjct: 126 TEARLSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNI 185

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           PSHN+ E+ +A +A I+ PEI++++L+  I GPDFPTGG ++     I  ++  GRG   
Sbjct: 186 PSHNLGEVVDACVAYIERPEITLDELMTIIPGPDFPTGG-VIMGDAGIRSAFASGRGTIV 244

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR R   EE+  G   I++ EIPYQV K++L+E+I EL+  K+I  + D+RDES +    
Sbjct: 245 VRGRTHTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVR 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V     R +D  +++  +  L+ + T F +N  VL     P+VM L  I+  ++  R+EV
Sbjct: 305 VAIELKRQVDSQVVLNQLLGLTPLRTSFSINTLVL-ENNKPRVMSLPEIIATFVDFRKEV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------- 415
           + RR+ FR++ I  +  +  G+ IA LNIDE+++II++                      
Sbjct: 364 IVRRTRFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSVDI 423

Query: 416 -------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                        V    + LT  QV AIL +RL+ L  LE+ ++++EL++++A   +  
Sbjct: 424 RNMIELVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYT 483

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L++     + +   + + K   +K  +    ++     + +     +  +       V
Sbjct: 484 KILSTDSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFV 543

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
                   R+ K       A   KE D         T   +L  S  GK Y L    L  
Sbjct: 544 KRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPL 603

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEESEII 632
                 G ++  +  L+  + I +             +   ++  ++ GN      S+  
Sbjct: 604 GEPSSRGRSLVNIFPLSDGETITSVMPLPSCDDEIGIANLDVVFATASGNIRRNALSDFQ 663

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRL 689
                GK  + ++  +++         DHV +     K + F++  + +   R   GVR 
Sbjct: 664 YVPSSGKIAMVLTPGDQLISAHVCGHADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRA 723

Query: 690 QSYKDGGISDVICFKIC------------------------------------------- 706
                G     +                                                
Sbjct: 724 IRLSAGDQVISMSVLHGIEASSELKESYLKIPVEARVAASHSGVVSDEVAPMLEEHTIER 783

Query: 707 --------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                        +      + +  +     +  RGGVG +      R+G  ++S
Sbjct: 784 EQFLEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVVAS 838



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
           S   +L V+  G        E    +R G   + +     +   +        D V ++ 
Sbjct: 792 SEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVVASFPVSQTDQVMLIT 851

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +  KL+  ++  I  + R  +GV L   + G     +   + 
Sbjct: 852 DKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVD 893



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY----KDGGISDVICFKICEGLT 710
             +   +  V EN      S  +    SRG GV + +     ++G +  V  F + +   
Sbjct: 790 ACSEQFILTVTENGFGKRTSAYEYRITSRG-GVGVVNILTTVRNGNV--VASFPVSQTDQ 846

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    +            +  R   G  + K   +  K +S
Sbjct: 847 VMLITDKGKLIRIAVTDIRVVGRSTQGVTLFK-TEKGEKVVS 887


>gi|262341254|ref|YP_003284109.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272591|gb|ACY40499.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 820

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 219/757 (28%), Positives = 390/757 (51%), Gaps = 22/757 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G+   +++KK
Sbjct: 5   EKLIPINIEDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYQLGIFSNSSYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVY+++VRLAQ +  RYPLI GQGNFG++D D  AA RYTE 
Sbjct: 65  SARIVGEVLGKYHPHGDISVYETMVRLAQKWTLRYPLIDGQGNFGSLDADPPAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM Q++E +L  + ++ VD +  +++   EP V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 125 RMRQISEEMLLDIKKETVDMQLNFDDSLEEPTVLPTRIPNLLINGSSGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALIDNPEI-SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           N++E   A  A IDN    S+E++++Y+  PDFPTGG I+   + +  ++  G+G   +R
Sbjct: 185 NLKETINAICAYIDNNNNLSVEEIMKYMKAPDFPTGG-IIYGYDGVKNAFHTGKGRIVLR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+   EE+ +G  CI+V EIPYQV KS +I +   L+   ++  +  IRDES  +   ++
Sbjct: 244 AKVHFEEI-QGRQCIIVDEIPYQVNKSDMITRTIGLMKEGKMEGIYQIRDESDRNGLRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           +   ++ +P++L+  +F  + ++T F +N   L     P  + +  +++ ++ HR +V+ 
Sbjct: 303 YILKQNTNPNILLNKLFQYTPLQTSFNVNNIALV-NGKPLQLNIKDMIQHFVDHRHDVII 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RRS + ++    RV IL G      ++D +I +I+  +        ++ +F ++E+Q  +
Sbjct: 362 RRSKYELKKCKNRVHILMGFFKILDHLDLMIQLIKKSNNHSDACTTLIKKFKISEDQSKS 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+SL  LE  ++K E D L+ + E   ++L     +   I  E+ ++K+ +  S 
Sbjct: 422 ILDMRLQSLTSLEVDKLKKEYDELVKKIEFFQNVLVQHSVRTKIIKEELLDIKKKYQDSR 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                 +             Q  +       +  ++    +      V       +E D 
Sbjct: 482 RTQIDYSGNKVHIEDLIENEQVVLTISHAGYIKRTSLSEYKRQGRGGVGNRGATARESDF 541

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV- 607
            K  L A     +L  +  GK + L    +  G    +  AIQ +I L  +  +    + 
Sbjct: 542 FKHLLIATNHQFLLFFTEKGKCFWLRVYEIPEGSKISKGRAIQNIIHLQQDDKVNAYILT 601

Query: 608 -------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
                  Y     +++V+ KG              + G   + +   + +   +   GD 
Sbjct: 602 GDLTNKEYVKDYYVMMVTQKGIIKKTSLENYSRPRKDGINAIVIRKGDSLLEAILTKGDS 661

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY--KDGGISDVICFKICE-GLTWIDSA 715
           HV +  ++ +++ FS +++    R   GV    +  K+  +  +IC    +     +  +
Sbjct: 662 HVFIAVKSGRIIRFSENKVRSTGRTSSGVIGIHFTNKNDMVIGMICVDGKKAKGHLLAVS 721

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + +  N     +  RGG G        ++G  ++
Sbjct: 722 EKGFGKRSNLKDYRITNRGGKGIKTINITQKTGYLIA 758



 Score = 81.4 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/480 (10%), Positives = 131/480 (27%), Gaps = 28/480 (5%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV-VTEIPYQVQKSRLIEKIAELIIAKR 294
           ++ I             R+++ +++       ++   +I   +     + K +       
Sbjct: 346 KDMIQHFVDHRHDVIIRRSKYELKKCKNRVHILMGFFKILDHLDLMIQLIKKSNNHSDAC 405

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             L++  +    +   I+          ++          ++        ++      ++
Sbjct: 406 TTLIKKFKISEDQSKSILDMRLQSLTSLEVDKLKKEYDELVKKIEFFQNVLVQHSVRTKI 465

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDR---RVEILKGLLIAYLNIDEIIAIIRNED 411
           +              ++  +    R   ID    +V I   +    + +    A      
Sbjct: 466 IK---------EELLDIKKKYQDSRRTQIDYSGNKVHIEDLIENEQVVLTISHAGYIKRT 516

Query: 412 KPKPVMVSRFSLTENQVDAILNLRL-RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                         N+          + L     +Q                 +    + 
Sbjct: 517 SLSEYKRQGRGGVGNRGATARESDFFKHLLIATNHQFLLFFTEKGK--CFWLRVYEIPEG 574

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                   I+ +  +                    +K  ++   +       +I      
Sbjct: 575 SKISKGRAIQNIIHLQQDDKVNA----YILTGDLTNKEYVKDYYVMMVTQKGIIKKTSLE 630

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
              +     ++A+  ++GDSL  A+       + +    G+        + S       +
Sbjct: 631 NYSRPRKDGINAIVIRKGDSLLEAILTKGDSHVFIAVKSGRIIRFSENKVRSTGRTSSGV 690

Query: 591 QLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-- 645
             +   N N  ++     D   +   LL VS KG        +     R GK    ++  
Sbjct: 691 IGIHFTNKNDMVIGMICVDGKKAKGHLLAVSEKGFGKRSNLKDYRITNRGGKGIKTINIT 750

Query: 646 -SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
                +  +  VT  D + ++ ++  ++  S+  I  M R  +GVRL + K+      + 
Sbjct: 751 QKTGYLIAIKHVTDQDDLMIIKKSGIIIRISVSGIRVMGRTTQGVRLINLKENDAIADVA 810



 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 46/436 (10%), Positives = 117/436 (26%), Gaps = 36/436 (8%)

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK---RI 295
           I +S         +  ++ + E    S   +  +    ++  +L ++  EL+      + 
Sbjct: 395 IKKSNNHSDACTTLIKKFKISEDQSKSILDMRLQSLTSLEVDKLKKEYDELVKKIEFFQN 454

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP--LNMNVLSMGRVPQ 353
            L++           ++   K         ++       +E        +  +S     +
Sbjct: 455 VLVQHSVRTKIIKEELLDIKKKYQDSRRTQIDYSGNKVHIEDLIENEQVVLTISHAGYIK 514

Query: 354 VMPLDGILKEWL-------AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
              L    ++         A  RE  F +           +   +     +L + EI   
Sbjct: 515 RTSLSEYKRQGRGGVGNRGATARESDFFKHLLIATNHQFLLFFTEKGKCFWLRVYEIPEG 574

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
            +         +      +     I       L      +   +   ++   +K      
Sbjct: 575 SKISKGRAIQNIIHLQQDDKVNAYI-------LTGDLTNKEYVKDYYVMMVTQKGIIKKT 627

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S +         I  +               +  E       +     I  +   ++  +
Sbjct: 628 SLENYSRPRKDGINAIVIRKGD---------SLLEAILTKGDSHV--FIAVKSGRIIRFS 676

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT----TDRILLLSTDGKAYTLPAGNLLS 582
              +RS    S  +  +HF   + + I +           +L +S  G        +   
Sbjct: 677 ENKVRSTGRTSSGVIGIHFTNKNDMVIGMICVDGKKAKGHLLAVSEKGFGKRSNLKDYRI 736

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKT 640
               G+ I+ +        ++          L+++   G    +  S I  +  T +G  
Sbjct: 737 TNRGGKGIKTINITQKTGYLIAIKHVTDQDDLMIIKKSGIIIRISVSGIRVMGRTTQGVR 796

Query: 641 FLKVSSEEKMKLVVKV 656
            + +   + +  V KV
Sbjct: 797 LINLKENDAIADVAKV 812


>gi|222474987|ref|YP_002563402.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida]
 gi|222419123|gb|ACM49146.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida]
          Length = 908

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 239/835 (28%), Positives = 388/835 (46%), Gaps = 95/835 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            +   V  VS+   LE  YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    
Sbjct: 6   QMSGGVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKP 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK+AR+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG+IDGD  A+ RY
Sbjct: 66  YKKAARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRY 125

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+++ A  +L  +DED VDFR  Y+E + EPV+ P++FPNLL NG  G+AVGM+T+I
Sbjct: 126 TEARLSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNI 185

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           PSHN+ E+ +A +A I+ PEI++++L+  I GPDFPTGG ++     I  ++  GRG   
Sbjct: 186 PSHNLGEVVDACVAYIERPEITLDELMAIIPGPDFPTGG-VIMGDAGIRSAFASGRGTIV 244

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR R   EE+  G   I++ EIPYQV K++L+E+I EL+  K+I  + D+RDES +    
Sbjct: 245 VRGRTHTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVR 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V     R +D  +++  +  L+ + T F +N  VL     P+VM L  I+  ++  R+EV
Sbjct: 305 VAIELKRQVDSQVVLNQLLGLTPLRTSFSINTLVL-ENNKPRVMSLPEIIATFVDFRKEV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------- 415
           + RR+ FR++ I  +  +  G+ IA LNIDE+++II++                      
Sbjct: 364 IVRRTRFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADI 423

Query: 416 -------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                        V    + LT  QV AIL +RL+ L  LE+ ++++EL++++A   +  
Sbjct: 424 RNMIELVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYT 483

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L++     + +   + + K   +   +    ++     + +     +  +       V
Sbjct: 484 KILSTDSLLMDIVKQGLLDAKAKLATPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFV 543

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
                   R+ K       A   KE D         T   +L  S  GK Y L    L  
Sbjct: 544 KRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPL 603

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEESEII 632
                 G ++  +  L+  + I +             +   ++  ++ GN      S+  
Sbjct: 604 GEPSSRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQ 663

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRL 689
                GK  + ++  +++         DHV +     K + F++  + +   R   GVR 
Sbjct: 664 YVPSSGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRA 723

Query: 690 QSYKDGGISDVICFKIC------------------------------------------- 706
                G     +                                                
Sbjct: 724 IRLSAGDQVISMSVLHGIEASSELKESYLKIPVEARVAASHSGVVSDEVAPMLEEHTIER 783

Query: 707 --------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                        +      + +  +     +  RGGVG +      R+G  ++S
Sbjct: 784 EQFLEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVVAS 838



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
           S   +L V+  G        E    +R G   + +     +   +        D V ++ 
Sbjct: 792 SEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVVASFPVSQTDQVMLIT 851

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +  KL+  ++  I  + R  +GV L   + G     +   + 
Sbjct: 852 DKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVD 893



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY----KDGGISDVICFKICEGLT 710
             +   +  V EN      S  +    SRG GV + +     ++G +  V  F + +   
Sbjct: 790 ACSEQFILTVTENGFGKRTSAYEYRITSRG-GVGVVNILTTVRNGNV--VASFPVSQTDQ 846

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    +            +  R   G  + K   +  K +S
Sbjct: 847 VMLITDKGKLIRIAVTDIRVVGRSTQGVTLFK-TEKGEKVVS 887


>gi|197364044|ref|YP_002143681.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197095521|emb|CAR61086.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 752

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 450/750 (60%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L   +E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFMENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  I  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|127511485|ref|YP_001092682.1| DNA topoisomerase IV subunit A [Shewanella loihica PV-4]
 gi|126636780|gb|ABO22423.1| DNA topoisomerase IV subunit A [Shewanella loihica PV-4]
          Length = 755

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 270/757 (35%), Positives = 441/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLTELGQGTVDWGVNFDGTLKEPMVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+ +A + LIDNP++ +E+L+E + GPD+PT   I+  R  I + Y 
Sbjct: 181 VGMATDVPPHNARELVDACVELIDNPKVDLERLMELVPGPDYPTEAEIISPRTEIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     S  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYSVE-----SGEIVITALPHQASGGKILEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM  +F  +D+E  F +N+NVL +   PQV  L  +L 
Sbjct: 296 SDHESPVRIVIVPRSNRVDCDQLMAHLFATTDLEKNFRVNLNVLGLNGRPQVKGLKQLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +  R+ IL+ L+IA+LNIDE+I IIR  D PK  ++SRF+
Sbjct: 356 EWLEFRLTTVRRRLEHRLDKVLARLHILEALMIAFLNIDEVIEIIRYHDDPKAELMSRFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL+L+LR L KLEE++IK+E   L AE+EK++ LL+S ++    I  E+++ 
Sbjct: 416 LTDEQANAILDLKLRHLAKLEEFKIKTEQSELEAEREKLELLLSSDRRMKTLIKKELKQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E S +   + Q+  +  E +TVV+S +GW+R  K H +D +A
Sbjct: 476 AETYGDE-----RRSPLVERSESRALSEQEL-VPAEAVTVVLSEKGWVRCAKGHDIDPTA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    A    +    + + + G+A+      L S R  GE +     L+  + +
Sbjct: 530 LSYKAGDGFLCAASGRSNHATVFIGSTGRAFATDTHTLPSARSQGEPVTTRFQLSPGESM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
             A + +     L+ S  G  FI +  ++++  + GK  L + +  ++    +V     +
Sbjct: 590 AHALLGEDGQCFLLASDAGYGFIGDYKDMVSRNKAGKALLSLPANAQVLPPKRVDKSRSE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG------GISDVICFKICEGLTWID 713
            +  +    ++L+FS+D +P++++GKG ++             +   +     +    + 
Sbjct: 650 SILAITNEGRMLLFSVDALPQLAKGKGNKIIGIASDRAKSREELLVHLHVVPQDTAVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R  K 
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDKV 746


>gi|296535360|ref|ZP_06897560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas
           cervicalis ATCC 49957]
 gi|296264302|gb|EFH10727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas
           cervicalis ATCC 49957]
          Length = 941

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 243/743 (32%), Positives = 368/743 (49%), Gaps = 43/743 (5%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G +    S  +  E    ++L   +   YL YA+S I  RA+PD+RDG KPVHRRI+ +M
Sbjct: 9   GNNGTGPSGHIPPEGTLPIALEEEMRRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E G      +KKSAR+VG+V+GK HPHGD ++YD++VR+AQ F  R PLI GQGNFG++
Sbjct: 69  QENGFTADKPYKKSARVVGDVMGKYHPHGDSAIYDAMVRMAQTFSLRVPLIDGQGNFGSM 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTEAR+ + A  +L+G+DED VDF   Y+E   EP V P+ FPNLL NG +
Sbjct: 129 DGDPPAAMRYTEARLAKSAVALLEGIDEDTVDFAPNYDESAQEPRVLPAAFPNLLVNGAN 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP+HN  E+ +A LALI  PE S+E L++ + GPDFPTG  ++  R  I  
Sbjct: 189 GIAVGMATNIPTHNPGEVIDATLALIAEPETSLEDLMKIMPGPDFPTGA-LILGRAGIRS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           ++  GRG   +RAR  +EE+  G   I ++EIPYQV K+ LIE+IAEL+ AK+I  + D+
Sbjct: 248 AFETGRGSIVLRARAEIEEMRGGRSLIAISEIPYQVNKAALIERIAELVRAKQIEGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      ++    +   P++++  ++  ++++T F +N   L     PQ M L   L
Sbjct: 308 RDESDRSGLRIVIELKKDATPEVVLNHLYRYTNLQTSFAVNFLAL-HQGRPQQMGLRQAL 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
           + ++  R EV+ RRS FR+     R  +L GL IA  NIDE+I +IR             
Sbjct: 367 QAFIDFREEVILRRSRFRLAKARDRGHLLVGLAIAVANIDEVIRLIRESPDAVTARTALM 426

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 V      LTE Q   IL LRL+ L  LE  +I +ELD 
Sbjct: 427 ARDWPVADVGPLLALVDDSGNIVTNETVKLTEAQARGILELRLQRLTGLERDKINAELDE 486

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           + A   ++  +L S  ++   +A E+R V+   +             +   +        
Sbjct: 487 VAARIRELLEILASHPRRMELMADELRAVRAQIASPRLSEIVDGLADQDDESLVEPGLMV 546

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V  +     R+        S+ + ++ D +  + +AHT   +L  ++ G A+
Sbjct: 547 VTLTRDGYVKRTPLETFRAQNRGGRGRSSANMRQDDVVIRSFNAHTHQWVLFFTSRGMAF 606

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFI 625
                 L        G +++ L+ L   + +                 L+  +S+GN   
Sbjct: 607 REKVWKLPEAGPTARGRSLRQLLQLREEEYVTAVLPLPQDEGLWDNLHLVFATSEGNVRR 666

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEM- 681
              S+       G   +K+   + +  V     GD+V +   + + + F   +D +    
Sbjct: 667 NRLSDFKNVRASGLIAMKLDEGDSLIGVSTCREGDNVMLATRSGRAIRFTADVDTLRVFA 726

Query: 682 SR-GKGVRLQSYKDGGISDVICF 703
            R   GVR      G     +  
Sbjct: 727 GRDSTGVRGIKLATGDQVIALSV 749



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 7/97 (7%)

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVT-GDHVAVVGENRKLL 671
           V+  G        E     R G+    +     +   +     V  GD V +V +N +L+
Sbjct: 820 VTDGGFGKRSSAYEYRVTGRGGQGITNITLSSRTGRSVVATFPVRMGDDVMLVTDNGRLI 879

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
               DQ+    R   GV +    +       CF + E
Sbjct: 880 RLPADQVRVTGRQAMGVMMLRLNEAEKVTS-CFTVVE 915



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 2/84 (2%)

Query: 664 VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNR 721
           V +       S  +     RG +G+   +     G S V  F +  G   +         
Sbjct: 820 VTDGGFGKRSSAYEYRVTGRGGQGITNITLSSRTGRSVVATFPVRMGDDVMLVTDNGRLI 879

Query: 722 SENDLLGWLGKRGGVGSLVPKGFP 745
                   +  R  +G ++ +   
Sbjct: 880 RLPADQVRVTGRQAMGVMMLRLNE 903



 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 4/47 (8%)

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
             D     ++      GL  +      Y +           RGG G 
Sbjct: 531 LADQDDESLV----EPGLMVVTLTRDGYVKRTPLETFRAQNRGGRGR 573


>gi|283836445|ref|ZP_06356186.1| DNA topoisomerase IV, A subunit [Citrobacter youngae ATCC 29220]
 gi|291067820|gb|EFE05929.1| DNA topoisomerase IV, A subunit [Citrobacter youngae ATCC 29220]
          Length = 752

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 264/749 (35%), Positives = 445/749 (59%), Gaps = 23/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAEVLLGELGQGTSDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPELMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++ ++L S ++  N +  E++   E +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELAKERDQLQAILASERKMNNLLKKELQADAEAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    + +
Sbjct: 530 SFKSAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEN 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  +   
Sbjct: 590 DDRKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDETDMLLAITTA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSY------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
            ++L+F +  +P++S+GKG ++ +       K      ++     +    I    R    
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAAKGEDSLALLYVLPPQSTLTIHVGKRKIKL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +L    G+RG  G+ + +G  R  + 
Sbjct: 710 RPEELQKVTGERGRRGT-LMRGLQRIDRI 737


>gi|16082084|ref|NP_394514.1| DNA gyrase subunit A [Thermoplasma acidophilum DSM 1728]
 gi|10640368|emb|CAC12182.1| DNA gyrase, subunit A (gyrA) related protein [Thermoplasma
           acidophilum]
          Length = 796

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 221/742 (29%), Positives = 384/742 (51%), Gaps = 16/742 (2%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +  ++   + + YL YA+S I  RAIPD+RDG KPV RR++++M E+G+     +KK AR
Sbjct: 5   EKRAVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCAR 64

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVGE +GK HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEAR+T
Sbjct: 65  IVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLT 124

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           Q+AE ++  +DE+ V FR  ++   SEP   PSK PNLL NG+SGIAVGMAT++  HN+ 
Sbjct: 125 QIAEDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNLT 184

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           EIC+A L  +D+ +  ++ LL+Y+ GPDFP GGI+   ++ ++E+YR GRG   V+    
Sbjct: 185 EICDAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKD-LIEAYRTGRGKVIVQGEVD 243

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
             E       +++  IPY V K+ L++ IA+L   + I  + DI+DES  +   ++    
Sbjct: 244 ATEDR----RLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGIRIVIKVR 299

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 L++  ++  + +E+   +   VL  G  P++M L  ++  ++ HR +V+ RRS 
Sbjct: 300 DDDIKPLVLNQLYEHTALESSIGIINLVLV-GNQPKLMNLKDLIDSFIDHRLDVILRRSQ 358

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNL 434
           FR+     R+++L G+L A  +ID ++ I+++          + + F L + Q+ AIL +
Sbjct: 359 FRLDRKKERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKLRNEFDLNDRQIKAILEM 418

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L   E+  ++SE+  + AE + ++ ++ S  ++ ++   EI E+++ +        
Sbjct: 419 RLQRLVNTEQESVRSEIAQIQAEIKDLEEIILSEDRRIDEFKKEITEIQKKYGDKRRSRI 478

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           +     E +  D    ++++I      +V   +      +           K  DS+K  
Sbjct: 479 KFRGITERTMEDLIPNEESLIMLSYGGLVKRVQADEYRSQRRGGKGVNTSMKTSDSIKSM 538

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAFVYDSTC 612
           +H  + D +   +  G+ +   A  +          +    + L   + +          
Sbjct: 539 IHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTEIMKAPPEK 598

Query: 613 --KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
              L++V+  G+        +  +   G   + +  ++++  V    GD ++ V+    K
Sbjct: 599 GYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDDELVSVSYTAGDKNMFVLSSKGK 658

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
             +F+  +I E  R   GVR     +G    +  F +      +  + + Y +  N    
Sbjct: 659 ASVFNTSEIRETGRTSMGVRSMRLNEGDTI-LTAFVVNSDEDILSISEKGYGKRTNISEF 717

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
            +  RG  G +V +   R+G+ 
Sbjct: 718 PIHHRGSSGVMVYRDTERTGRV 739



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 62/176 (35%), Gaps = 6/176 (3%)

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
             S S  L  +  ++ D L    +      + +LS+ GKA       +         ++ 
Sbjct: 620 FDSKSSGLKIITLEDDDELVSVSYTAGDKNMFVLSSKGKASVFNTSEIRETGRTSMGVRS 679

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +  LN    I+TAFV +S   +L +S KG       SE   + R     +     E+   
Sbjct: 680 MR-LNEGDTILTAFVVNSDEDILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTERTGR 738

Query: 653 VVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           V         D V +V  N K +     +IPE SR   GV+L              
Sbjct: 739 VSHAIPVRDEDEVILVSMNEKTIRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAV 794


>gi|89075923|ref|ZP_01162298.1| DNA topoisomerase IV subunit A [Photobacterium sp. SKA34]
 gi|89048364|gb|EAR53942.1| DNA topoisomerase IV subunit A [Photobacterium sp. SKA34]
          Length = 758

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 275/754 (36%), Positives = 442/754 (58%), Gaps = 25/754 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   
Sbjct: 2   TDVSMDGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ +E++L  + +   D+   ++    EP + P++ P++L NG +GIAVGMA
Sbjct: 122 MRYTESRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  AA+ +I+NP+  ++ L+E++ GPD+PT   I+ S+  + + Y+ GRG
Sbjct: 182 TDIPPHNAREVANAAVHMIENPKADLDALMEFVQGPDYPTEAEIITSKADLKKVYKSGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E        IV+T +P+Q   ++L+E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SIRMRAVWHKENGD-----IVITALPHQTSGAKLLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIV+ P++  +D + LM  +F  +D+E  F  N+N+L +   PQV  L  I+ EWL 
Sbjct: 297 NPTRIVIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGLVEIIAEWLE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR  + RR  +R+  ++ R+ IL+GLL AYLNIDE+I IIRNE+ PK   +SRF L+  
Sbjct: 357 YRRTTVRRRLQYRLDKVNARLHILEGLLAAYLNIDEVIEIIRNEEDPKAEFMSRFGLSAI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L KLEE +I++E D L  E+E+++ LL S ++    I  EI    E +
Sbjct: 417 QADAILEIKLRQLAKLEEIKIRAEQDELAKEREQLEKLLGSERRLNTLIKKEILADAEKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A KA  ++ +I  E ITVV+S +GWIR  K H VD S+L++K
Sbjct: 477 GD-----DRRSPLVEREEA-KALTERDLIPSEAITVVLSEKGWIRHAKGHEVDPSSLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +    + L +DG++Y L + +L S R  GE I   ++L    ++    
Sbjct: 531 SGDSYLAHARGKSNLPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGTNMRQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVAV 663
           + +     L+ S  G  FI + +++++  + GK  L V     +     V  +  D +  
Sbjct: 591 MAEDDQIWLMASDAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADIENDQILA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAG 716
           +    ++L+F I  +P++ +GKG ++ +        ++  +S +      +    + +  
Sbjct: 651 ITNEGRMLLFPIKDLPQLGKGKGNKIINIPSARSKAREEFLSYLTVIS-ADTHVTLYAGK 709

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R      +DL  + G+RG  G+++P+G  R  + 
Sbjct: 710 RKLGLKPSDLYNFRGERGRRGAMLPRGLQRVTRM 743


>gi|294012117|ref|YP_003545577.1| DNA gyrase subunit A [Sphingobium japonicum UT26S]
 gi|292675447|dbj|BAI96965.1| DNA gyrase subunit A [Sphingobium japonicum UT26S]
          Length = 910

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 239/835 (28%), Positives = 379/835 (45%), Gaps = 97/835 (11%)

Query: 6   ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +++   L +  ++  +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ +  E 
Sbjct: 1   MTDETALADPSDISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSAHES 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      ++KSARIVG+VIGK HPHGD ++Y +L R+ Q +  R PLI GQGNFG++D D
Sbjct: 61  GFTHNKPYRKSARIVGDVIGKYHPHGDSAIYHALARMTQDWSMRVPLIDGQGNFGSMDPD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+ +V   +L  +D+D VDF+  Y+  +SEP V P++FPNLL NG  GIA
Sbjct: 121 PPAAMRYTEARLAKVTNALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAGGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+  A LA IDN  I+I++L++ + GPDFPT   ++  +     +Y 
Sbjct: 181 VGMATNIPPHNLGEVIRACLAYIDNTGITIDELIQIVPGPDFPTAP-LILGQSGARSAYH 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RAR  +EE       IV+T IPYQV K+ L+EKIAE    KRI  + DIRDE
Sbjct: 240 TGRGSIMMRARHEIEEGRGDRRSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S+ +   ++    R   P++++  ++  +  ++ FP    +   G  P+++ +  I++ +
Sbjct: 300 SSREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPA-NMLAIRGGRPELLNIRDIIEAF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------ 418
           +  R EV+ RR+ + +     R  IL GL+IA  N+DE++ IIR    P           
Sbjct: 359 VRFREEVITRRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLARD 418

Query: 419 ----------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L++ QV AIL+LRL  L  L   +I +EL  L A
Sbjct: 419 WPVAEIAPYLKLVEAIETEVGGDSYRLSDTQVRAILDLRLHRLTALGRDEIGNELAELAA 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              +  ++L    + +  +  E   ++  F+             E++ A      + +IE
Sbjct: 479 AIAEYLAILGDRVKLYAVMREEFEAIERDFATPR--------LSEITAAADGIDDEDLIE 530

Query: 517 KEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V ++ +G+I+                 S +  K+ D++       T   +L  ST
Sbjct: 531 REEMVVTVTVQGYIKRTPLESFRAQARGGKGRSGMTTKDEDAITELFVTSTHTPVLFFST 590

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            GK Y L    L        G  +  L+ L+  + I T               ++  ++ 
Sbjct: 591 AGKVYRLKVWRLPEGGPATRGRPMVNLLPLSPGETIQTVLPLPEDEDSWKDLHVMFATAN 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSS--EEKMKLVV-KVTGDHVAVVGENRKLLIFSIDQ 677
           G                GK  ++     ++++  V      D V +     K + F    
Sbjct: 651 GTVRRNSMDAFANIPSNGKIAMRFDDESDDRLIGVALLTEEDDVLLATRQGKAIRFQATD 710

Query: 678 IPE-MSRG-KGVRLQSYKDGGISDVICFKICEGLT------------------------- 710
           + E  SR   GVR  + K       +      G                           
Sbjct: 711 VREFQSRTSTGVRGMTLKKDDEVISLSILHRSGANQEERDDYLRFAPWKAEKEGSPQMSA 770

Query: 711 ------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                        +      Y +  +        RGG G        R+G  ++S
Sbjct: 771 ERFAELAAKEQFILTVCANGYGKLSSAYDYRRTGRGGQGITNIDNIGRNGPVVAS 825



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGE 666
              +L V + G   +    +     R G+    + +       +       GDH+ +V +
Sbjct: 780 EQFILTVCANGYGKLSSAYDYRRTGRGGQGITNIDNIGRNGPVVASFPARHGDHLMLVTD 839

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWID 713
             KL+   ++ +  + R   GVRL +  D   +      +  +  T + 
Sbjct: 840 QAKLIRMGLESLRVIGRSSAGVRLFNVSDDEHVVSAAKIEESDEETEVS 888


>gi|77456731|ref|YP_346236.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens Pf0-1]
 gi|77380734|gb|ABA72247.1| topoisomerase IV subunit A [Pseudomonas fluorescens Pf0-1]
          Length = 754

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/760 (35%), Positives = 441/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++     + V+  SL    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDNLADSLDGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP+V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLQEPLVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI--PLLEDIR 302
            G+G  R+RA + VE+       I+VT +P+QV  ++++E+IA L+ AK    P + D+R
Sbjct: 241 TGKGSVRMRAVYHVEDGD-----IIVTALPHQVSGAKVLEQIAALMQAKPSKAPQIADLR 295

Query: 303 DESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES  +   RIV+ P N  +D + LM+ +F  +++E+ + +N+N++ +   PQ+  L  +
Sbjct: 296 DESDHENPCRIVIIPVNSRVDHEALMQHLFASTELESTYRVNVNIIGLDGKPQLKNLRAL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL  R   + RR  FR+  ++RR+ +L GLLIAYLN+DE+I IIR E+ PK  ++ R
Sbjct: 356 LVEWLEFRVLTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPKAKLIER 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q D IL+ RLR L +LEE +++ E D LL E+ K+ +LL+S  +    +  E+ 
Sbjct: 416 FALSEIQADYILDTRLRQLARLEEMKLRDEQDELLKEQAKLQALLSSEAKLKKLVRSELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           +  E +        RR+   E + A KA  +  ++  E +TVV+S +GWIRS K H +D 
Sbjct: 476 KDAETYGD-----DRRSPIVERAEA-KALTEHDLLPNEKVTVVLSEKGWIRSAKGHEIDA 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           + L +K GD  K +    +    +++ + G++Y+L    L S RG GE +   +      
Sbjct: 530 TGLSYKAGDGFKTSAAGRSNQSAVVIDSTGRSYSLATHTLPSARGQGEPLTGRLTPPPGA 589

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
                 + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+     V    
Sbjct: 590 TFECVLMPEEDSLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVIAPRPVADRE 649

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLT 710
            + +A V    +LLIF I  +P++ +GKG ++          ++  ++D I         
Sbjct: 650 HNWLASVTTEGRLLIFKISDLPQLGKGKGNKIIGISGERVASREEYVTD-IAVLPEGATL 708

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            + +  R+ +   +DL  + G+RG  G+ +P+GF R    
Sbjct: 709 VLQAGKRTLSLKADDLEHYKGERGRRGNKLPRGFQRVDAL 748


>gi|254038188|ref|ZP_04872246.1| DNA topoisomerase IV [Escherichia sp. 1_1_43]
 gi|300818784|ref|ZP_07098990.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 107-1]
 gi|226839812|gb|EEH71833.1| DNA topoisomerase IV [Escherichia sp. 1_1_43]
 gi|281602409|gb|ADA75393.1| DNA topoisomerase 4 subunit A [Shigella flexneri 2002017]
 gi|300528569|gb|EFK49631.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 107-1]
          Length = 752

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|332299199|ref|YP_004441121.1| DNA gyrase, A subunit [Treponema brennaborense DSM 12168]
 gi|332182302|gb|AEE17990.1| DNA gyrase, A subunit [Treponema brennaborense DSM 12168]
          Length = 817

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 234/766 (30%), Positives = 397/766 (51%), Gaps = 28/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     +  VS+   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI++AM+E G
Sbjct: 1   MEEIRTPEGGTLIPVSIEAEMKKAYIDYSMSVIVSRALPDVRDGMKPVHRRILYAMNEEG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +    +K A +VG+V+G+ HPHGD SVYD++VRL Q F  RY  I  QGNFG IDG  
Sbjct: 61  LHYSGKTRKCATVVGDVLGRYHPHGDASVYDAIVRLGQHFSMRYMPIQKQGNFGGIDGSP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAAYRYTEA+M+ VAE ++  + ++ VDF   +++   EP V P+KFP LLANG+SGIAV
Sbjct: 121 AAAYRYTEAKMSTVAEEMVADIKKETVDFLPNFDDTRQEPTVLPAKFPFLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN++EIC A  A IDNP++S+E+L   + GPDFPTGG I+  R  I ++Y+ 
Sbjct: 181 GMATNMPPHNLREICSAISAYIDNPDVSLEELCGIVKGPDFPTGG-IIFGRRGIKQAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R+ +E   RG   I+ TEIPYQV+   L ++I EL   K I  +E + D S
Sbjct: 240 GRGKILIRGRFNIEVDKRGRETIIFTEIPYQVRTDDLCKRIGELARDKIIEGIERVNDGS 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           A D   ++    R     +++  +F  + +++ F +    L     P+++ L  +++ ++
Sbjct: 300 AGDDVRIVIELKRGAIAKVVLNQLFSKTALQSSFGVINLALVK-GRPEILTLKDLIRYFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            HR+EV+ RR+ + ++  + R  IL+ L++A  NIDE+I IIR     +      + RF 
Sbjct: 359 EHRQEVVTRRTRYDLRKAEERAHILRALIVAIDNIDEVIRIIRGSRDTQTAKNGLMERFE 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
             + Q  AI++++L+ L  LE   ++ EL  L      +  LL   ++    I  E   +
Sbjct: 419 FDDVQAQAIVDMQLKRLTNLEIEDLRRELAELETLIVHLKDLLAHPEKILALIKEETESL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------- 534
           +E +        RRT     +   +    + +I++E + ++ISN G+I+ +         
Sbjct: 479 REKYGD-----DRRTDIV--ADEVEQINIEDLIKEEEMVILISNLGYIKRIPLTAYKAQG 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                 ++    E D +     A T D I+ ++ +GK+Y L    +     +     I+ 
Sbjct: 532 RGGKGSNSAKLVEDDFINQIFIASTHDYIMFITNEGKSYWLKVHEIPEAGRNSRGAHIKG 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++ N++I T      +     L + ++ G    V+ S+      +G   +++   +K
Sbjct: 592 LLTVSPNEEITTVVSLKEFSDEQYLFMATAAGVVKKVQTSQFSNAKTRGIIAIRLDEGDK 651

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +   +   G D + ++    + L  +   +  M R G+GV       G        ++  
Sbjct: 652 LVTAILSGGTDELILISRRGQALRITETSVRPMGRAGRGVGGLKLAQGDEL-AGALRVES 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +    + + +  +        RG  G  +     ++G+ + +
Sbjct: 711 DACMMLLTEKGFGKRVDFDEFAAHGRGTGGQRIYGVSDKTGEIVGT 756



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+      +   + +  + A+   EGD L  A+ +  TD ++L+S  G+A  +   ++  
Sbjct: 624 VVKKVQTSQFSNAKTRGIIAIRLDEGDKLVTAILSGGTDELILISRRGQALRITETSVRP 683

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---- 638
               G  +   + L    ++  A   +S   +++++ KG    V+  E  A+ R      
Sbjct: 684 MGRAGRGVGG-LKLAQGDELAGALRVESDACMMLLTEKGFGKRVDFDEFAAHGRGTGGQR 742

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
              +   + E +  +     D +  +    K L  + + + +  R   GVR+ +     +
Sbjct: 743 IYGVSDKTGEIVGTINAADSDEIVCITSQGKSLRVAANSVTKQGRSASGVRVFNIDPPDM 802

Query: 698 S 698
            
Sbjct: 803 V 803


>gi|227326925|ref|ZP_03830949.1| DNA topoisomerase IV subunit A [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 756

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 278/752 (36%), Positives = 453/752 (60%), Gaps = 23/752 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  ++++LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+ L++NP+ S+E+LL+++ GPDFPT   I+  R+ + + Y+ GRG
Sbjct: 182 TDIPPHNVREVAAAAVMLLENPKASLEELLQHVQGPDFPTEAEIITPRDEVRKLYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E 
Sbjct: 357 FRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D+L  E++++ +LL S ++  N I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASDRKLSNLIKKEIQSDAQAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E S A KA  +   +  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLRERSEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS +      +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAVAKGKSNQPVVFIDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +      LL+ S  G  F+   ++++A  R GK  + +    K    +++ GD   +  +
Sbjct: 591 MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALAPIEIKGDDNLLMAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRS 718
               ++L+F +  +P++S+GKG ++ S      ++       +     +    +    R 
Sbjct: 651 TAAGRMLLFPVSDLPQLSKGKGNKIVSISSADFAEGKDRLTWLYLLPPQASVTLYFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                N+L  + G+RG  G+L+ +G  R  + 
Sbjct: 711 LVLRPNELQKYQGERGRKGTLL-RGLQRIDRI 741


>gi|300950773|ref|ZP_07164660.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 116-1]
 gi|300449943|gb|EFK13563.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 116-1]
          Length = 752

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGTPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLLPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|114320129|ref|YP_741812.1| DNA topoisomerase IV subunit A [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226523|gb|ABI56322.1| DNA topoisomerase IV subunit A [Alkalilimnicola ehrlichii MLHE-1]
          Length = 749

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 272/748 (36%), Positives = 436/748 (58%), Gaps = 25/748 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
             +   LR   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A +KKS
Sbjct: 9   EFETRPLREFTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGLSNLAKYKKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RYTEA
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRYTEA 128

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A+L+LQ + +  VD+   ++    EP + P++ PN+L NG +GIAVGMAT IP H
Sbjct: 129 RLAPYAKLLLQELGQGTVDWVPNFDGTMEEPGLLPARVPNVLLNGGTGIAVGMATDIPPH 188

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A + L+D PE     L+ ++  PDFPT   I+ +++ I   Y  G G  R+RA
Sbjct: 189 NLREVVSACVHLLDEPEADTVALMAHVPAPDFPTEAEIITAKDDIRRIYETGNGTLRMRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIV 312
           R+      R +  I+VT +PYQV  S+++E+IA  + +K++P++ED+RDES  +   R+V
Sbjct: 249 RYE-----RENGDIIVTALPYQVSGSKVLEQIAGQMQSKKLPMVEDLRDESDHENPTRLV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           + P++  +D   +ME +F  +D+E  + +N+NV+++   P+V+ L  +L EWL  R + +
Sbjct: 304 ITPRSNRVDIHRVMEHLFATTDLEKNYRVNLNVIALDGRPRVLGLRELLLEWLTFRTDTV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR ++R+Q +  R+ IL+GLLIAYLNIDE+IAIIR ED+PKPV+++RF L+E Q +AIL
Sbjct: 364 RRRLNWRLQKVQDRLHILEGLLIAYLNIDEVIAIIREEDEPKPVLMARFGLSERQAEAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+LR L KLEE +I+ E  +L  E++++ ++L S ++    I  E+R   E +      
Sbjct: 424 ELKLRHLAKLEEMKIRGEQGDLERERDELQTILGSDERLRELIKEELRADAEQYGDE--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RR+       A +A  +  ++  EP+TVV+S +GW+R+ K H VD   L++K GD  +
Sbjct: 481 --RRSPLV-TRSAARALDETDLMPSEPVTVVLSEKGWVRAAKGHEVDAPGLNYKAGDQYR 537

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                 +  + + L   G++Y+L A  L S RG GE +   +              D   
Sbjct: 538 DHAPGRSNQQAVFLDHTGRSYSLTAHTLPSARGQGEPLTGRLSPAPGARFEHVLCGDPAS 597

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRK 669
             ++ +  G  F+   S++ A  R GK  L V    ++      T D    +A V    +
Sbjct: 598 LWVLATDAGYGFVCALSDMYAKNRSGKALLTVPQGARVLAPTPATADEGAELAAVSSGGR 657

Query: 670 LLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           LL+F + ++P +++GKG ++          ++  ++ +      +GL+ +    R     
Sbjct: 658 LLVFPLSELPRLAKGKGNKIIGIPAAAVKAREELLTGLAVIAPGQGLS-LTVGRRGMTLK 716

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +DL  +   RG  G+L+P+G  R    
Sbjct: 717 PDDLAAYRAPRGRRGALLPRGLRRVDAI 744


>gi|269103507|ref|ZP_06156204.1| topoisomerase IV subunit A [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163405|gb|EEZ41901.1| topoisomerase IV subunit A [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 754

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 279/751 (37%), Positives = 444/751 (59%), Gaps = 25/751 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TDMTMDGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ +E++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMA
Sbjct: 122 MRYTESRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  AA+ +IDNP+  ++ L+E++ GPD+PT   I+  +  + + YR GRG
Sbjct: 182 TDIPPHNAREVAAAAVHMIDNPKADLDALMEFVKGPDYPTEAEIITPKAELKKVYRTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SIKMRAVWHKENGD-----IVITSLPHQVSGAKLLEQIATQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIV+ P++  +D + LM  +F  +D+E  F +N+N+L +   PQV  L  I+ EWL 
Sbjct: 297 NPTRIVVVPRSNRIDCEQLMNHLFASTDLEKSFRVNLNMLGLDGRPQVKGLVSIISEWLE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR  + RR   R+  +  R+ IL+GLL AYLNIDE+I IIR+ED PK  ++SRF LT  
Sbjct: 357 YRRITVRRRLQHRLDKVTARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLTAI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L KLEE +I+ E D L  EKE ++ LL S ++    I  E+    E +
Sbjct: 417 QADAILEIKLRQLAKLEEIKIRGEQDELSKEKEHLEKLLGSERRLNTLIKKELLADAETY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E + A KA  ++ +I  EPITVV+S +GWIR  K H VD S L +K
Sbjct: 477 GD-----DRRSPMVERAEA-KALTERDLIPSEPITVVLSEKGWIRHAKGHEVDPSTLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +    + L +DG++Y L + +L S R  GE I   ++L    ++    
Sbjct: 531 SGDSYLAHARGKSNQPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGSNMRQVM 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGDHVAV 663
           + +     L+ S  G  FI + S++++  + GK  L +    ++     +  +  D +  
Sbjct: 591 MAEDEQLWLMASDAGYGFICKSSDMVSKNKSGKALLTLPENAQVMAPQEIRDIEHDQILA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAG 716
           +    ++L+F I  +P++ +GKG ++ +        ++  +S +        +T + +  
Sbjct: 651 ITNEGRMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSYLQVLHDGAQVT-LHAGK 709

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R  +   +DL  + G+RG  GS++P+G  R 
Sbjct: 710 RKLSLKPSDLDNFRGERGRRGSILPRGLQRV 740


>gi|23335944|ref|ZP_00121175.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bifidobacterium longum DJO10A]
 gi|189440293|ref|YP_001955374.1| DNA gyrase subunit A [Bifidobacterium longum DJO10A]
 gi|227547506|ref|ZP_03977555.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239622837|ref|ZP_04665868.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133627|ref|YP_004000966.1| gyra [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688197|ref|YP_004207931.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F]
 gi|322690199|ref|YP_004219769.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|189428728|gb|ACD98876.1| Type IIA topoisomerase A subunit [Bifidobacterium longum DJO10A]
 gi|227212021|gb|EEI79917.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239514834|gb|EEQ54701.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|311772885|gb|ADQ02373.1| GyrA [Bifidobacterium longum subsp. longum BBMN68]
 gi|320455055|dbj|BAJ65677.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320459533|dbj|BAJ70153.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F]
          Length = 883

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 218/763 (28%), Positives = 370/763 (48%), Gaps = 27/763 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++YD+LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 195 NVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S E+    L+  I GPDFPTG  I+   + I ++YR GRG  
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 276

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE++    
Sbjct: 277 TMRAVVNTEEIN-GRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 335

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  ++ W+ H+ 
Sbjct: 336 QRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFIRHWVNHQL 394

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTEN 426
           +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR  +              + + 
Sbjct: 395 DVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMGLLDIDQV 454

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR+L ++   +I +E + L  +      +L   ++Q   I  E+ E+   +
Sbjct: 455 QADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDILAKPERQRKIIGDELDEIVAKY 514

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                      +         A     +       +  +     RS       +     +
Sbjct: 515 GDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFIKRTKADEYRSQHRGGKGIKGTKLR 574

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D +       T + +L  +  G+ Y + A  L  G    +   +  L+    ++ I T
Sbjct: 575 EDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQFAPDESIQT 634

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------EKMKLVVK 655
                 Y+    L++ +  G       +E  +  + G   +++ ++      +++     
Sbjct: 635 VLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAAL 694

Query: 656 VT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-T 710
               D + +V +    L F  D   +  M R   GV+   +++      +     +    
Sbjct: 695 CNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAGVQGMKFRNDDSLLAMDVVPGDSDKD 754

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   + +        L  R G+G    +     G  + +
Sbjct: 755 LFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEGRGALVGA 797


>gi|91794566|ref|YP_564217.1| DNA topoisomerase IV subunit A [Shewanella denitrificans OS217]
 gi|91716568|gb|ABE56494.1| DNA topoisomerase IV subunit A [Shewanella denitrificans OS217]
          Length = 770

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 263/757 (34%), Positives = 432/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAINLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+ D ++    EP   P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGDNFDGTMKEPKTLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HNV+E+  A + L+D P+  + +LLE + GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDVPPHNVRELVAACVELLDEPKTELARLLEIVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + +E+       I++T +P+Q    +++E+IA  +IAK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYTLEQGE-----IIITALPHQAGSGKILEQIANQMIAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D++  F +N+NVL +   PQV  L  +L 
Sbjct: 296 SDHENPVRLVIVPRSNRVDCDQLMAHLFATTDLQKSFRVNLNVLGLDGRPQVKGLKEMLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  +R++ +  R+ IL  LLIA+LNIDE+I IIR ++ PK  + +RF+
Sbjct: 356 EWLVYRVGTVTRRLEYRLEKVLARLHILDALLIAFLNIDEVIEIIRYQEDPKSELKARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL+L+LR L KLEE++I +E + L AE++K+  +L S ++    +  E+   
Sbjct: 416 LTDKQAEAILDLKLRHLAKLEEFKITAEQEELAAERDKLQLILGSERRLKTLVKKELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +  +     RR+   E S +   T Q+     E +TVV+S +GW+R  K H VD  A
Sbjct: 476 GETYGDA-----RRSPIVERSESKALTQQEL-TPTEAVTVVLSEKGWVRCAKGHDVDGQA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS   +    +    + + T G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKSGDSYLGSAIGKSNQAAVFIDTSGRAFATDSHTLPSARSQGEPITTRFNMAPGESM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + D   + L+ S  G  FI   S++ +  + GK  L +    +  +  ++      
Sbjct: 590 QHVLMGDDDQRYLMASDAGYGFICSFSDMASRNKAGKALLTLPENAQSLMPKRIDSSQSP 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            +  +    ++L+F +D +P++S+GKG ++             +   +C    +    + 
Sbjct: 650 SILAITNEGRMLMFELDALPQLSKGKGNKIIGIPSERSKAREELLAHLCLVPADCSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|327395262|dbj|BAK12684.1| topoisomerase IV subunit A ParC [Pantoea ananatis AJ13355]
          Length = 757

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 270/752 (35%), Positives = 440/752 (58%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SELTQDGAERLALHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA+ALID+P+ S++ LLE + GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNLREVAQAAIALIDDPKTSLDALLEIVQGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +
Sbjct: 242 SVRQRAVWKKEDGE-----VVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRVDLDQVMNHLFATTDLEKSYRINLNMIGLDNRPAVKNLLEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R+  + RR+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E 
Sbjct: 357 FRRDTVRRRLNYRLDRVLRRLHILDGLLVAFLNIDEVIHIIRTEDEPKPVLMSRFDISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++    +  E++     F
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNTLLKKELQADSNNF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A   +  +  +  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLREREEAKALSETEL-VPSEPVTIVLSQMGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS   A    +   +  + + G++YTL   +L S RG GE +   +       +    
Sbjct: 531 AGDSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVMEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVV 664
           +     +LL+ S  G  FI   +++I+  R GK  L +    ++   + V    D +  +
Sbjct: 591 MEPEEQRLLMASDAGYGFICTFNDLISRNRAGKALLTLPENARVMTPMAVHHEDDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRS 718
            +  ++L+F + ++P+MS+GKG ++ S      +        +          +    R 
Sbjct: 651 TQAGRMLMFPVGELPQMSKGKGNKIISIPSADAASGADKLAWLMILPPGSAITLHVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 +L  +   RG  G+L+P+G  +  + 
Sbjct: 711 LLLRSEELQKFRADRGRRGTLLPRGLQKIDRV 742


>gi|309793584|ref|ZP_07688010.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 145-7]
 gi|308122541|gb|EFO59803.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 145-7]
          Length = 752

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E      E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSEREKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|296453193|ref|YP_003660336.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JDM301]
 gi|296182624|gb|ADG99505.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. longum JDM301]
          Length = 883

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 217/763 (28%), Positives = 370/763 (48%), Gaps = 27/763 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++YD+LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 195 NVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S E+    L+  I GPDFPTG  I+   + I ++YR GRG  
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 276

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE++    
Sbjct: 277 TMRAVVNTEEIN-GRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 335

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  ++ W+ H+ 
Sbjct: 336 QRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFIRHWVNHQL 394

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTEN 426
           +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR  +              + + 
Sbjct: 395 DVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMGLLDIDQV 454

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR+L ++   +I +E + L  +      +L   ++Q   I  E+ E+   +
Sbjct: 455 QADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDILAKPERQRKIIGDELDEIVAKY 514

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                      +         A     +       +  +     R+       +     +
Sbjct: 515 GDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFIKRTKADEYRAQHRGGKGIKGTKLR 574

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D +       T + +L  +  G+ Y + A  L  G    +   +  L+    ++ I T
Sbjct: 575 EDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQFAPDETIQT 634

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------EKMKLVVK 655
                 Y+    L++ +  G       +E  +  + G   +++ ++      +++     
Sbjct: 635 VLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAAL 694

Query: 656 VT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-T 710
               D + +V +    L F  D   +  M R   GV+   +++      +     +    
Sbjct: 695 CNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAGVQGMKFRNDDSLLAMDVVPGDSDKD 754

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   + +        L  R G+G    +     G  + +
Sbjct: 755 LFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEGRGALVGA 797


>gi|73760124|dbj|BAE19969.1| topoisomerase IV subunit A [Photobacterium damselae subsp.
           piscicida]
          Length = 754

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 279/751 (37%), Positives = 444/751 (59%), Gaps = 25/751 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TDMTMDGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ +E++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMA
Sbjct: 122 MRYTESRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  AA+ +IDNP+  ++ L+E++ GPD+PT   I+  +  + + YR GRG
Sbjct: 182 TDIPPHNAREVAAAAVHMIDNPKADLDALMEFVKGPDYPTEAEIITPKAELKKVYRTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SIKMRAVWHKENGD-----IVITSLPHQVSGAKLLEQIATQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIV+ P++  +D + LM  +F  +D+E  F +N+N+L +   PQV  L  I+ EWL 
Sbjct: 297 NPTRIVVVPRSNRIDCEQLMNHLFASTDLEKSFRVNLNMLGLDGRPQVKGLVSIISEWLE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR  + RR   R+  +  R+ IL+GLL AYLNIDE+I IIR+ED PK  ++SRF LT  
Sbjct: 357 YRRITVRRRLQHRLDKVTARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLTAI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L KLEE +I+ E D L  EKE ++ LL S ++    I  E+    E +
Sbjct: 417 QADAILEIKLRQLAKLEEIKIRGEQDELSKEKEHLEKLLGSERRLNTLIKKELLADAETY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E + A KA  ++ +I  EPITVV+S +GWIR  K H VD S L +K
Sbjct: 477 GD-----DRRSPMVERAEA-KALTERDLIPSEPITVVLSEKGWIRHAKGHEVDPSTLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +    + L +DG++Y L + +L S R  GE I   ++L    ++    
Sbjct: 531 SGDSYLAHARGKSNQPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGSNMRQVM 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGDHVAV 663
           + +     L+ S  G  FI + S++++  + GK  L +    ++     +  +  D +  
Sbjct: 591 MAEDEQLWLMASDAGYGFICKSSDMVSKNKSGKALLTLPENAQVMAPQEIRDIEHDQILA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAG 716
           +    ++L+F I  +P++ +GKG ++ +        ++  +S +        +T + +  
Sbjct: 651 ITNEGRMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSYLQVLHDGAQVT-LHAGK 709

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R  +   +DL  + G+RG  GS++P+G  R 
Sbjct: 710 RKLSLKPSDLDNFRGERGRRGSILPRGLQRV 740


>gi|23465217|ref|NP_695820.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
 gi|23325845|gb|AAN24456.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
          Length = 883

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 218/763 (28%), Positives = 370/763 (48%), Gaps = 27/763 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++YD+LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 195 NVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S E+    L+  I GPDFPTG  I+   + I ++YR GRG  
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 276

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE++    
Sbjct: 277 TMRAVVNTEEIN-GRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 335

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  ++ W+ H+ 
Sbjct: 336 QRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFIRHWVNHQL 394

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTEN 426
           +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR  +              + + 
Sbjct: 395 DVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMGLLDIDQV 454

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR+L ++   +I +E + L  +      +L   ++Q   I  E+ E+   +
Sbjct: 455 QADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDILAKPERQRKIIGDELDEIVAKY 514

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                      +         A     +       +  +     RS       +     +
Sbjct: 515 GDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFIKRTKADEYRSQHRGGKGIKGTKLR 574

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D +       T + +L  +  G+ Y + A  L  G    +   +  L+    ++ I T
Sbjct: 575 EDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGARDSKGQHVANLLQFAPDESIQT 634

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------EKMKLVVK 655
                 Y+    L++ +  G       +E  +  + G   +++ ++      +++     
Sbjct: 635 VLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAAL 694

Query: 656 VT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-T 710
               D + +V +    L F  D   +  M R   GV+   +++      +     +    
Sbjct: 695 CNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAGVQGMKFRNDDSLLAMDVVPGDSDKD 754

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   + +        L  R G+G    +     G  + +
Sbjct: 755 LFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEGRGALVGA 797


>gi|224584974|ref|YP_002638773.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469502|gb|ACN47332.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 760

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 267/755 (35%), Positives = 449/755 (59%), Gaps = 25/755 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               L+ +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+
Sbjct: 4   EDPLLMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLN 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSA 126
             A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S 
Sbjct: 64  ASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVG
Sbjct: 124 AAMRYTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  G
Sbjct: 184 MATDIPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG  R+RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES 
Sbjct: 244 RGSVRMRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESD 298

Query: 307 EDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW
Sbjct: 299 HENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEW 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           LA RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++
Sbjct: 359 LAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGIS 418

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   +
Sbjct: 419 ETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADAD 478

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L+
Sbjct: 479 AYGD-----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           +K GDS K A+   +   ++ + T G++Y +    L S RG GE +   + L     +  
Sbjct: 533 YKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEH 592

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV- 663
             +     KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  + 
Sbjct: 593 MLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLL 652

Query: 664 -VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSA 715
            + +  ++L+F +D +P++S+GKG ++ +         D G++ +        LT     
Sbjct: 653 AITQAGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVG 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R       +L   +G+RG  G+ + +G  R  + 
Sbjct: 712 KRKIKLRPEELQKVVGERGRRGT-LMRGLQRIDRI 745


>gi|220935287|ref|YP_002514186.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996597|gb|ACL73199.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
          Length = 749

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 270/752 (35%), Positives = 423/752 (56%), Gaps = 23/752 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L  E  + + L+   E+ YL Y++  I +RA+P++ DG KPV RRII+AMSE+GL   +
Sbjct: 5   DLNLEGAERLPLKDFTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIIYAMSELGLSAAS 64

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAY 129
            +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   S AA 
Sbjct: 65  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAM 124

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE+R++  A+L+L  + +  VD+   ++    EP V P++ PN+L NG +GIAVGMAT
Sbjct: 125 RYTESRLSPYAQLLLSELGQGTVDWVPNFDGTLEEPKVLPARLPNVLLNGGTGIAVGMAT 184

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN++E+  A + L+DNP  S+  L E+I GPDFPT   I+  R  + + Y  G GG
Sbjct: 185 DIPPHNLREVASACVHLLDNPRASVADLCEHIQGPDFPTEAEIITPRAELRKMYESGNGG 244

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            R+RAR+      R    I++T +PYQV  S+++E+IA  + AK++P++ED+RDES  + 
Sbjct: 245 LRMRARYE-----REGTDIIITALPYQVSGSKVLEQIAAQMNAKKLPMVEDLRDESDHEH 299

Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
             R+V+ P++  ++ + LM  +F  +D+E  + +N+N++ +   PQV  L  +L EWL  
Sbjct: 300 PTRLVIQPRSNRVEVEALMAHLFATTDLERSYRVNLNMIGLDGRPQVKGLLTLLGEWLHF 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           R E + RR  +R+  +  R+ IL+GLLIAYLNIDE+I IIR  D+PKPV++ RF LT+ Q
Sbjct: 360 RTETVRRRLQWRLDKVLARLHILEGLLIAYLNIDEVIRIIRENDEPKPVLMERFGLTDTQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL L+LR L KLEE +I+ E D L  E++ ++  L S  +    I  EI+   E F 
Sbjct: 420 AEAILELKLRHLAKLEEMKIRGEQDELEKERDSLEKTLGSAARLKRLIREEIQADAEKFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+     + A      +  +  EP+TVV+S  GW+R+ K H VD   L +K 
Sbjct: 480 DE-----RRSPIVARAAAQAMDESEL-VPTEPLTVVLSKMGWVRAAKGHDVDAEGLSYKS 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD+   A    +    + + + G+ YTLPA  L S RG GE +   +        V   +
Sbjct: 534 GDAFLSAARGRSNQPAVFIDSTGRTYTLPAHTLPSARGQGEPLSGRLSPPDGARFVGVMM 593

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVV 664
              +   L+ +  G  F+    ++ +  + GK  L V +  K+     V  +  D +A  
Sbjct: 594 GAPSDLFLLSTDYGYGFVCSLEDMQSRNKAGKAVLSVPAGAKVLPPVRVRDIDADWIAAA 653

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI------SDVICFKICEGLTWIDSAGRS 718
                LL+  ++++P M+RGKG ++ +     +         I          + +  + 
Sbjct: 654 TSEGHLLVTRLNELPRMARGKGNKIINVPSAKLKTREEWVAAITLVQDGEPLTVVAGKKF 713

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 ++  +  +RG  G  +P+GF +  + 
Sbjct: 714 KTMKGPEVDEYAAERGKRGKKLPRGFQKVDEL 745


>gi|332086678|gb|EGI91818.1| DNA topoisomerase IV, A subunit [Shigella boydii 5216-82]
          Length = 752

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P + PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPVRLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGMAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|311278061|ref|YP_003940292.1| DNA topoisomerase IV, A subunit [Enterobacter cloacae SCF1]
 gi|308747256|gb|ADO47008.1| DNA topoisomerase IV, A subunit [Enterobacter cloacae SCF1]
          Length = 752

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 266/749 (35%), Positives = 446/749 (59%), Gaps = 23/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A F
Sbjct: 1   MSDMAERLALHEFTEKAYLDYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ A+++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYADVLLGELGQGTVDWVPNFDGTMQEPRMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HNV+E+ +AA+ALID P  +++++L+ + GPD+PT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNVREVAQAAIALIDKPATTLDEVLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+  +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVINALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPSVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF+++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKPVLMSRFAISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E ++L  E+++I ++L S ++  N +  E++   E F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQNDLEKERDQIQAILASERKMNNLLKKELQADAEAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S   W+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMSWVRSAKGHDIDAKGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K ++   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SWKASVKGKSNQPVVFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   S+++A  R GK  + +    ++   + +    D +  +   
Sbjct: 590 DEQKLLMASDAGYGFVCTFSDLVARNRAGKALITLPENARVMPPLVIEDESDMLLAITSA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRSYNR 721
            ++L+F +  +P++S+GKG ++        ++       +     +    I    R    
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIIGIPTADAANGADGLAHLYILPPQSTLTIHVGKRKIKL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +L    G+RG  G+ + +G  +  + 
Sbjct: 710 RPEELQKVTGERGRRGT-LMRGLQKIDRV 737


>gi|317049570|ref|YP_004117218.1| DNA topoisomerase IV subunit A [Pantoea sp. At-9b]
 gi|316951187|gb|ADU70662.1| DNA topoisomerase IV, A subunit [Pantoea sp. At-9b]
          Length = 756

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 270/752 (35%), Positives = 447/752 (59%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SELTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEILLSELGQGTVDYIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA+ LI+ P  ++++LL+ + GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNIREVAQAAITLIEKPNTTLDELLDIVHGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +
Sbjct: 242 SIRQRAVWKKEDGE-----VVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  I+ EWL 
Sbjct: 297 NPTRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLLEIISEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ + RR ++R+  + RR+ IL+GLL+A+LNIDE+I IIR ED+PK V++SRF ++E 
Sbjct: 357 YRRDTVTRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKAVLMSRFEISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E++   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQAELEKERDQLQAILASDRKMSNLLKKELQADSQTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLREREEA-KALSETDLVSAEPVTIVLSQMGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+   A    +   +  + + G++YTL   +L S RG GE +   + L     +    
Sbjct: 531 AGDNYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTLPPGAVMEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     KLL+ S  G  FI   +++++  R GK  L +    K+   + V  +   +  +
Sbjct: 591 MEPDEQKLLMASDAGYGFICTFADLVSRNRSGKALLTLPENAKVMTPMAVNHEDDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKICEGLTW-IDSAGRS 718
            +  ++L+F + ++P+MS+GKG ++ S        G    V    +  G    +    R 
Sbjct: 651 TQAGRMLMFPVGELPQMSKGKGNKIISIPSAEAAAGSDKLVWLLILPTGSAITLHVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 +L  +   RG  G+L+P+G  R  + 
Sbjct: 711 LVLRSEELQKFRADRGRRGTLLPRGLQRIDRV 742


>gi|109896837|ref|YP_660092.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica T6c]
 gi|109699118|gb|ABG39038.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica T6c]
          Length = 770

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 256/755 (33%), Positives = 431/755 (57%), Gaps = 23/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S    + ++ ++ + +R   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSQEIIINKDGIEQLPMRQFTEESYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSNNAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ +E++L  + +  VD++  ++    EP + P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTESRLSKFSEVLLTELGQGTVDWQPNFDGTLDEPKILPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DN +  + +LLE++ GPD+PT   I+  +  I + Y 
Sbjct: 181 VGMATDIPPHNVREVANACAHLLDNSKAELHELLEFVQGPDYPTDAEIITPQSDIRKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +        +  I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYY-----EEAGDIIITALPHQASGGKVLEQIAAQMQAKKLPMVSDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+++ P++  +D + LM+ +F  +D+E  + +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPTRLLITPRSNRVDVEQLMQHLFATTDLEKNYRVNINMIGLDGRPQVKDLRMILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R++ + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR EDKPK V++  FS
Sbjct: 356 EWLIFRKDTVVRRLQYRLDKVLARLHILEGLMIAFLNIDEVIRIIRYEDKPKLVLMDTFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK E D L  E++++  +L S ++    I  EI   
Sbjct: 416 LSDIQAEAILELKLRHLAKLEEMKIKGEQDELAKERDELQLILGSDRRLKTLIKKEILAA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E S +   + ++ +   E +TVV+S +GW R  K H VD+  
Sbjct: 476 AEMYGD-----DRRSPIIERSESKALSEKELI-PSEAVTVVLSEKGWARCAKGHDVDVVG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +  + + + T G+A++  A  L S R  GE I     +   + +
Sbjct: 530 LSYKAGDKYLASSKGRSNQQAVFMDTSGRAFSCDAHLLPSARSQGEPITGRFSIVSGESV 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               +     + L+ S  G  F+ + +++I+  R GK ++ +    K+     V     D
Sbjct: 590 EHVVMGQDEQQYLIASDAGYGFVGKFADMISKNRAGKAYISLPKAAKIIAPQAVHDLSSD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
               +    ++L+F +  +P + +GKG ++ S              V+          + 
Sbjct: 650 WCLAISNEGRMLMFPLRDLPSLGKGKGNKIISIPSAKSQAREEFVKVLAVVPQGANIKVL 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           +  R    + +DL  + G+RG  G+ +P+G  R  
Sbjct: 710 AGKRGMTLTADDLTHYQGERGRRGNKLPRGLQRVD 744


>gi|283787151|ref|YP_003367016.1| topoisomerase IV subunit A [Citrobacter rodentium ICC168]
 gi|282950605|emb|CBG90276.1| topoisomerase IV subunit A [Citrobacter rodentium ICC168]
          Length = 752

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 265/749 (35%), Positives = 440/749 (58%), Gaps = 23/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAEVLLGELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LLE + GPDFPT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEKPKTTLDELLEIVQGPDFPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVVVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF +TE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGITETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K  +   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SYKSDVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEA 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DERKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIDDESDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQS------YKDGGISDVICFKICEGLTWIDSAGRSYNR 721
            ++L+F +  +P++S+GKG ++ +       K       +     +    I    R    
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEALKGEDGLAHLYVLPPQSTLTIHVGKRKIKL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +L    G+RG  G+ + +G  R  + 
Sbjct: 710 RPEELQKVTGERGRRGT-LMRGLQRIDRI 737


>gi|146313063|ref|YP_001178137.1| DNA topoisomerase IV subunit A [Enterobacter sp. 638]
 gi|145319939|gb|ABP62086.1| DNA topoisomerase IV subunit A [Enterobacter sp. 638]
          Length = 752

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 266/749 (35%), Positives = 445/749 (59%), Gaps = 23/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI+ AMSE+GL   A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVFAMSELGLSASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P  +++++L+ + GPD+PT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAMTLIEKPNTTLDEVLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F+ +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFVTTDLEKSYRINLNMIGLNGRPSVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E + L  E++++ ++L S ++  N +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQNELEKERDQLQAILASERKMSNLLKKELQADSDAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREEA-KAMNEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE I   + L     +    +  
Sbjct: 530 SFKSAVKGKSNQPVVFIDSTGRSYAIDPITLPSARGQGEPITGKLTLPPGATVDHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  FI   ++++A  R GK  + +     +   + +  D+  +  +   
Sbjct: 590 EEQKLLMASDAGYGFICTFNDLVARNRAGKALISLPDNAHVMPPLVIENDNDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSY------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
            ++L+F +  +P++S+GKG ++ S       K       +     +    +    R    
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIISIPSAEAAKGEDGLAHLFILPPQSTLTVHVGKRKIKL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +L   +G+RG  GS + +G  R  + 
Sbjct: 710 RPEELQKVVGERGRRGS-LMRGLQRIDRV 737


>gi|16125827|ref|NP_420391.1| DNA gyrase subunit A [Caulobacter crescentus CB15]
 gi|221234588|ref|YP_002517024.1| DNA gyrase subunit A [Caulobacter crescentus NA1000]
 gi|13422971|gb|AAK23559.1| DNA gyrase subunit A [Caulobacter crescentus CB15]
 gi|220963760|gb|ACL95116.1| DNA gyrase subunit A [Caulobacter crescentus NA1000]
          Length = 919

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 240/849 (28%), Positives = 365/849 (42%), Gaps = 98/849 (11%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D+ +        ++  +++   L   YL YA+S I  RA+PD RDG KPVHRR++ +
Sbjct: 1   MSDDHNTIPADGSRGDIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G      + KSAR+VG+V+GK HPHGD S+Y +LVR+ Q F     LI GQGNFG+
Sbjct: 61  MHEQGQTPERPYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTE RM   A  +L  +D+D VDF D Y+ ++ EP V PS+ PNLL NG 
Sbjct: 121 VDGDMPAAMRYTECRMAPPAMALLADLDKDTVDFADNYDGKEQEPTVLPSRIPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A L LID P+++ ++LL+ + GPDFPTGG I+  R    
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACLLLIDQPDVTTDQLLDLVPGPDFPTGGEII-GRAGPR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++   GRG   +R    VEE+  G   I+VTEIPYQV K+ L+E IAEL+  K+I  + D
Sbjct: 240 QALLTGRGSVIMRGVASVEELRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKIEGVAD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  D   ++    R    ++++  ++  + +++ F +NM  L+    P+ M L  +
Sbjct: 300 IRDESNRDGMRIVVELKRDASGEVILNQLYRFTALQSSFGVNMLALN-RGRPEQMGLHQL 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           ++ ++  R EV+ RR+ F +     R  +L GL IA  NIDE I IIR+   P       
Sbjct: 359 IQLFVDFREEVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERL 418

Query: 421 FSLT-----------------------------ENQVDAILNLRLRSLRKLEEYQIKSEL 451
            + +                             + Q  AIL L L  L  L   +I +E 
Sbjct: 419 VAKSWPAGDMLPLVELIADPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEIGNEA 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L         LL+        +  E+ EV+E F+                        
Sbjct: 479 AALADAIRGYLELLSDRANIMAVVREELVEVREKFAIPRRCQIVDGDADMEDEDLIVRED 538

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       V  +     R+        S +  K  D++     A T   +L  ++ GK
Sbjct: 539 MVITVTMGGYVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPLLFFTSGGK 598

Query: 572 AYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNA 623
            Y +    L        G+A   L+ +   + I +               ++  +  G+ 
Sbjct: 599 VYKMKVWRLPLGVANSRGKAFVNLLPIEPGETITSILALPEDEATWGGLDVMFATRSGSV 658

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM- 681
              + S+ +   R GK  +K+   + +  V     D  V +     + + FS+D++    
Sbjct: 659 RRNKLSDFVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFA 718

Query: 682 SR-GKGVRLQSYKDGGISDVICF-------------------------KICEGLTWIDS- 714
           SR   GVR     DG     +                              EG     + 
Sbjct: 719 SRDSTGVRGVKLLDGDQVISMAVLRSVDATPAERAAYLKHQRAMLRAADGEEGEDTATAA 778

Query: 715 ------------------------------AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                                         +   + +  +        RGG G       
Sbjct: 779 DDGDEEVGEASLTPERIAELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLS 838

Query: 745 PRSGKFLSS 753
            R G+ + S
Sbjct: 839 KRGGRLVGS 847



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVTG-DHVAVVG 665
           +   LL VSS+G        +     R G+            ++     +   D + +V 
Sbjct: 801 AEEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLSKRGGRLVGSFPIDESDQILLVT 860

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRL-QSYKDGGISDVICFKICEGLT 710
           +  +L+   + QI   +R  +GV + ++ +D  +  V       G  
Sbjct: 861 DQGQLIRVPVSQIRVAARNTQGVTIFRTAQDEHVVSVERLADSGGDD 907


>gi|323131534|gb|ADX18964.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 760

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 267/755 (35%), Positives = 450/755 (59%), Gaps = 25/755 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               L+ +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+
Sbjct: 4   EDPLLMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLN 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSA 126
             A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S 
Sbjct: 64  ATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVG
Sbjct: 124 AAMRYTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  G
Sbjct: 184 MATDIPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG  R+RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES 
Sbjct: 244 RGSVRMRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESD 298

Query: 307 EDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW
Sbjct: 299 HENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEW 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           LA RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++
Sbjct: 359 LAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGIS 418

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   +
Sbjct: 419 ETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADAD 478

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L+
Sbjct: 479 AYGD-----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           +K GDS K A+   +   ++ + T G++Y +    L S RG GE +   + L     +  
Sbjct: 533 YKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEH 592

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV- 663
             +     KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  + 
Sbjct: 593 MLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLL 652

Query: 664 -VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSA 715
            + +  ++L+F +D +P++S+GKG ++ +         D G++ +        LT     
Sbjct: 653 AITQAGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVG 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R       +L   +G+RG  G+ + +G  R  + 
Sbjct: 712 KRKIKLRPEELQKVVGERGRRGT-LMRGLQRIDRI 745


>gi|227876547|ref|ZP_03994658.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227842861|gb|EEJ53059.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 858

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 240/774 (31%), Positives = 381/774 (49%), Gaps = 42/774 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +    V  V L   +++ YL YA+S I  RA+PD+RDG KPVHRR+I+ M + G    
Sbjct: 21  SEVEASRVMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYTMYDGGYRPN 80

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F K AR+VG+V+G  HPHGD SVYD+L RL QP+  RYPL++GQGNFG+      AA 
Sbjct: 81  GGFSKCARVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAQ 140

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE +M  +A  +++ ++ED VDF D Y+  + EP V PS+ PNLL NG  GIAVGMAT
Sbjct: 141 RYTECKMAPLAMEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMAT 200

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRESIVESYRL 245
            IP HN++EI +AAL  ++NPE S E+L    ++ I GPDFPTG  I+  R  I ++YR 
Sbjct: 201 RIPPHNLREIADAALWYLENPEASREELLEAAMQRIKGPDFPTGATIL-GRRGIEDTYRT 259

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG    RA   VEE+  G  C+V TE+PYQV    L+ KIA+L    ++  + DIRDE 
Sbjct: 260 GRGSIVQRAVVNVEEL-HGRTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDET 318

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      ++    R   P +++ +++  + ++  FP NM  L    VP+ + LDG +  W
Sbjct: 319 SDRAGTRLVVVLKRDAVPKVVLNNLYKRTQLQDAFPANMLALVD-GVPRTLSLDGFIHYW 377

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-- 422
           + H+  V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     +   V      
Sbjct: 378 VVHQVNVIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLMDLL 437

Query: 423 -LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            + E Q DAIL L+LR L  LE  +I  E   L A+      +L   ++Q   ++ E+ E
Sbjct: 438 SVDEVQADAILALQLRRLAALERQKILDEHAELEAKVADFQDILAKPERQRAIVSTELAE 497

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           +   ++       R+T     +        + +I +E + V I+  G+ +          
Sbjct: 498 IANKWADE-----RKTAIVPFAGEMS---VEDLIPEEDMVVTITRGGFAKRTRVDAYRSQ 549

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
           +     +     +E D ++    + + D IL  +  G+ Y   A  +  G    +   + 
Sbjct: 550 RRGGKGVKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAYEIPEGGRDSKGQHVA 609

Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE- 647
            L+     + I        ++    L++ + +G       ++   N   G   +K+  + 
Sbjct: 610 NLLAFQPEERIAQVLHISSFEDKEYLVLATKRGFVKKTHLTDYDTNRTGGLIAIKLREDP 669

Query: 648 ----EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISD 699
               +++   V     + + +V  + + L F+     +  M R   GV    ++D     
Sbjct: 670 EGEPDQLVSAVLADDTEDLILVSRDGQSLRFTASDDQLRPMGRSTSGVTGMRFRDDDEL- 728

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    +  G          Y +  +     +  RGG+G  V       GK + +
Sbjct: 729 LTMDVVRPGADLFVVTEGGYAKRTDLSEYRVQGRGGLGIKVANLVEARGKLVGA 782



 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 2/132 (1%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
           +   +R +   +  ++ + F++ D L           + +++  G A             
Sbjct: 703 SDDQLRPMGRSTSGVTGMRFRDDDELLTMDVVRPGADLFVVTEGGYAKRTDLSEYRVQGR 762

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLK 643
            G  I++   +     +V A V D   ++LV+ + G        E+    R   G  F +
Sbjct: 763 GGLGIKVANLVEARGKLVGALVTDEESEVLVIMAGGKIVRSRVDEVSKTGRNTQGVIFSR 822

Query: 644 VSSEEKMKLVVK 655
              ++++  V  
Sbjct: 823 ADGDDRVIAVTL 834


>gi|170681468|ref|YP_001745289.1| DNA topoisomerase IV subunit A [Escherichia coli SMS-3-5]
 gi|170519186|gb|ACB17364.1| DNA topoisomerase IV, A subunit [Escherichia coli SMS-3-5]
          Length = 752

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 476 -----RRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|213690935|ref|YP_002321521.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522396|gb|ACJ51143.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320456981|dbj|BAJ67602.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 883

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 217/763 (28%), Positives = 367/763 (48%), Gaps = 27/763 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++YD+LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 195 NVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S E+    L+  I GPDFPTG  I+   + I ++YR GRG  
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 276

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE++    
Sbjct: 277 TMRAVVNTEEIN-GRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 335

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  ++ W+ H+ 
Sbjct: 336 QRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFIRHWVNHQL 394

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTEN 426
           +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR  +              + + 
Sbjct: 395 DVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMELLDIDQV 454

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR+L ++   +I +E + L         +L   ++Q   I  E+ E+   +
Sbjct: 455 QADAILAMQLRTLTRMNRDKIVAEHEELQRRIADYIDILAKPERQRKIIGDELDEIVAKY 514

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                      +         A     +       +  +     R+       +     +
Sbjct: 515 GDERRTRILPFSGEMNVEDLIAEENVVVTVTHSGFIKRTKADEYRAQHRGGKGIKGTKLR 574

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D +       T + +L  +  G+ Y + A  L  G    +   +  L+    ++ I T
Sbjct: 575 EDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQFAPDETIQT 634

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------EKMKLVVK 655
                 Y+    L++ +  G       +E  +  + G   +++ ++      +++     
Sbjct: 635 VLSIPNYEVARYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAAL 694

Query: 656 VTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-T 710
               D + +V      L F  D   +  M R   GV+   ++       +     +    
Sbjct: 695 CNAQDDIILVSRLGMSLKFQADDEQLRPMGRQTAGVQGMKFRADDSLLAMDVVPSDSDKD 754

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   + +        L  R G+G    +     G  + +
Sbjct: 755 LFVVTNEGFAKRTAIGEYRLQGRNGLGVKAVQLVEGRGALVGA 797


>gi|157148585|ref|YP_001455904.1| DNA topoisomerase IV subunit A [Citrobacter koseri ATCC BAA-895]
 gi|157085790|gb|ABV15468.1| hypothetical protein CKO_04412 [Citrobacter koseri ATCC BAA-895]
          Length = 752

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 264/749 (35%), Positives = 441/749 (58%), Gaps = 23/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAEVLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++E++L+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLEQVLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVITALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF +TE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPALMSRFGITETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELAKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLNYKSGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K +    +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SWKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  +   
Sbjct: 590 DEQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDETDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSY------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
            ++L+F +  +P++S+GKG ++ +       +       +     +    I    R    
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGDDTLAQLYVLPPQSTLTIHVGKRKIKL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +L    G+RG  G+ + +G  R  + 
Sbjct: 710 RPEELQKVTGERGRRGT-LMRGLQRIDRI 737


>gi|168819764|ref|ZP_02831764.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343323|gb|EDZ30087.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087625|emb|CBY97389.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 752

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|269977748|ref|ZP_06184708.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1]
 gi|306817508|ref|ZP_07451252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|307699857|ref|ZP_07636908.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16]
 gi|269934052|gb|EEZ90626.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1]
 gi|304649732|gb|EFM47013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|307614895|gb|EFN94113.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16]
          Length = 857

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 236/774 (30%), Positives = 377/774 (48%), Gaps = 42/774 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
                  V  V L   +++ YL YA+S I  RA+PD+RDG KPVHRR+I+ M + G    
Sbjct: 20  TEAESNRVMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPN 79

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F K  R+VG+V+G  HPHGD SVYD+L RL QP+  RYPL++GQGNFG+      AA 
Sbjct: 80  GGFSKCMRVVGDVLGHFHPHGDASVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAP 139

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE +M  +A  +++ ++ED VDF D Y+  + EP V PS+ PNLL NG  GIAVGMAT
Sbjct: 140 RYTECKMAALALEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMAT 199

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRESIVESYRL 245
            IP HN++E+ +AA   +++PE S E+L    ++ I GPDFPTG  I+  R  I ++YR 
Sbjct: 200 RIPPHNLREVADAAQWYLEHPEASREELLEAAMQRIKGPDFPTGATIL-GRRGIEDTYRT 258

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG    RA   VEE+  G  C+V TE+PYQV    L+ KIA+L    ++  + DIRDE 
Sbjct: 259 GRGSIVQRAVVNVEEL-HGRTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDET 317

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      ++    R   P +++ +++  + ++  FP NM  L    VP+ + LDG +  W
Sbjct: 318 SDRAGTRLVVVLKRDAVPKVVLNNLYKRTQLQDAFPANMLALVD-GVPRTLSLDGFIHYW 376

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-- 422
           + H+  V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     +   V      
Sbjct: 377 VVHQVNVIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLMDLL 436

Query: 423 -LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            + E Q DAIL L+LR L  LE  +I  E   L A+      +L   ++Q   ++ E+ E
Sbjct: 437 SVDEVQADAILALQLRRLAALERQKILDEHAELEAKVADFQDILAKPERQRAIVSTELAE 496

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           +   ++       R+T     +        + +I +E + V I+  G+ +          
Sbjct: 497 IANKWADE-----RKTAIVPFAGEMS---VEDLIPEEDMVVTITRGGFAKRTRVDAYRSQ 548

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
           +     +     +E D ++    + + D IL  +  G+ Y   A  +  G    +   + 
Sbjct: 549 RRGGKGVKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAYEIPEGGRDSKGQHVA 608

Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE- 647
            L+     + I        ++    L++ + +G       ++   N   G   +K+  + 
Sbjct: 609 NLLAFQPEERIAQVLHISSFEDKEYLVLATKRGFVKKTHLTDYDTNRTGGLIAIKLREDP 668

Query: 648 ----EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISD 699
               +++   V     + + +V  + + L F+     +  M R   GV    ++D     
Sbjct: 669 EGEPDQLVSAVLADDTEDLILVSRDGQSLRFTASDDQLRPMGRSTSGVTGMRFRDDDEL- 727

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    +  G          Y +  +     +  RGG+G  V       GK + +
Sbjct: 728 LTMDVVRPGADLFVVTEGGYAKRTDLSEYRVQGRGGLGIKVANLVEARGKLVGA 781



 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 2/132 (1%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
           +   +R +   +  ++ + F++ D L           + +++  G A             
Sbjct: 702 SDDQLRPMGRSTSGVTGMRFRDDDELLTMDVVRPGADLFVVTEGGYAKRTDLSEYRVQGR 761

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLK 643
            G  I++   +     +V A V D   ++LV+ + G        E+    R   G  F +
Sbjct: 762 GGLGIKVANLVEARGKLVGALVTDEESEVLVIMAGGKIVRSRVDEVSKTGRNTQGVIFSR 821

Query: 644 VSSEEKMKLVVK 655
              ++++  V  
Sbjct: 822 ADGDDRVIAVTL 833


>gi|188532595|ref|YP_001906392.1| DNA topoisomerase IV subunit A [Erwinia tasmaniensis Et1/99]
 gi|188027637|emb|CAO95487.1| DNA topoisomerase IV subunit A [Erwinia tasmaniensis Et1/99]
          Length = 758

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 271/757 (35%), Positives = 447/757 (59%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTPDGAERLALHEFTENAYLKYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LSNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDYVQNFDGTMQEPSMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+ +AA+ LID+P+ ++++LL+ + GPD+PT   I+  R  I + Y+
Sbjct: 178 VGMATDIPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRSEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  EE       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDE
Sbjct: 238 NGRGSVRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILS 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF 
Sbjct: 353 EWLVFRRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRGEDEPKPVLMSRFD 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E+  ++ LL S ++    +  E++  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERAHLEGLLASERKMNTLLKKELQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D + 
Sbjct: 473 SDAYGD-----DRRSPLREREEA-KAIGEHELMPSEPVTIVLSQSGWVRSAKGHDIDPAG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    A    +   ++ + + G++Y L    L S RG GE +   +       +
Sbjct: 527 LSYKAGDGYLGAARGKSNQPVVFIDSTGRSYALDPVTLPSARGQGEPLTGKLTPPPGAVV 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660
               + D T KLL+ S  G  F+   +++++  R GK  L + +   +   + +    D 
Sbjct: 587 EQVLMADDTQKLLMASDAGYGFVCTFADLVSRNRAGKALLTLPANANVMAPLAIHSNDDL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWID 713
           +  +    ++L+F +  +P++S+GKG ++ S         +  ++ ++       +T + 
Sbjct: 647 LLAITAAGRMLMFPVGDLPQLSKGKGNKIVSIPSAEAASGEDKLAWLLLLTPESDIT-LH 705

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              R       DL  +  +RG  G+L+P+G  R  + 
Sbjct: 706 VGKRKLTLKAADLQKFRAERGRRGTLLPRGLQRIDRV 742


>gi|218550273|ref|YP_002384064.1| DNA topoisomerase IV subunit A [Escherichia fergusonii ATCC 35469]
 gi|218357814|emb|CAQ90458.1| DNA topoisomerase IV, subunit A [Escherichia fergusonii ATCC 35469]
 gi|324114943|gb|EGC08908.1| DNA topoisomerase IV [Escherichia fergusonii B253]
 gi|325498577|gb|EGC96436.1| DNA topoisomerase IV subunit A [Escherichia fergusonii ECD227]
          Length = 752

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 270/750 (36%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++E+LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEEPKTTLEQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVITALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     I    +  
Sbjct: 530 SYKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPVTGKLTLPPGATIDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK--LVVKVTGDHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +    ++   LV++   D +  +   
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRTGKAMITLPENARVMPPLVIRSETDMLLAITHA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAHLYVMPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRI 737


>gi|22127381|ref|NP_670804.1| DNA topoisomerase IV subunit A [Yersinia pestis KIM 10]
 gi|45442750|ref|NP_994289.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597690|ref|YP_071881.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           32953]
 gi|108809111|ref|YP_653027.1| DNA topoisomerase IV subunit A [Yersinia pestis Antiqua]
 gi|108810694|ref|YP_646461.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|150260297|ref|ZP_01917025.1| DNA topoisomerase IV subunit A [Yersinia pestis CA88-4125]
 gi|153948943|ref|YP_001399574.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           31758]
 gi|162419004|ref|YP_001604893.1| DNA topoisomerase IV subunit A [Yersinia pestis Angola]
 gi|165924871|ref|ZP_02220703.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939881|ref|ZP_02228420.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008853|ref|ZP_02229751.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212201|ref|ZP_02238236.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399465|ref|ZP_02304989.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419083|ref|ZP_02310836.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425150|ref|ZP_02316903.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167469330|ref|ZP_02334034.1| DNA topoisomerase IV, A subunit [Yersinia pestis FV-1]
 gi|170022913|ref|YP_001719418.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis YPIII]
 gi|186896831|ref|YP_001873943.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis PB1/+]
 gi|218927864|ref|YP_002345739.1| DNA topoisomerase IV subunit A [Yersinia pestis CO92]
 gi|229837354|ref|ZP_04457517.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides A]
 gi|229840565|ref|ZP_04460724.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842886|ref|ZP_04463038.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900892|ref|ZP_04516016.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|270487736|ref|ZP_06204810.1| DNA topoisomerase IV, A subunit [Yersinia pestis KIM D27]
 gi|294502738|ref|YP_003566800.1| DNA topoisomerase IV subunit A [Yersinia pestis Z176003]
 gi|21960467|gb|AAM87055.1|AE013953_11 DNA topoisomerase IV subunit A [Yersinia pestis KIM 10]
 gi|45437616|gb|AAS63166.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51590972|emb|CAH22630.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           32953]
 gi|108774342|gb|ABG16861.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|108781024|gb|ABG15082.1| DNA topoisomerase IV subunit A [Yersinia pestis Antiqua]
 gi|115346475|emb|CAL19348.1| DNA topoisomerase IV subunit A [Yersinia pestis CO92]
 gi|149289705|gb|EDM39782.1| DNA topoisomerase IV subunit A [Yersinia pestis CA88-4125]
 gi|152960438|gb|ABS47899.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162351819|gb|ABX85767.1| DNA topoisomerase IV, A subunit [Yersinia pestis Angola]
 gi|165912192|gb|EDR30830.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923071|gb|EDR40222.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992192|gb|EDR44493.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206947|gb|EDR51427.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963077|gb|EDR59098.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051969|gb|EDR63377.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055913|gb|EDR65694.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169749447|gb|ACA66965.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis YPIII]
 gi|186699857|gb|ACC90486.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis PB1/+]
 gi|229682231|gb|EEO78323.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|229690153|gb|EEO82210.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696931|gb|EEO86978.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705477|gb|EEO91487.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides A]
 gi|262360770|gb|ACY57491.1| DNA topoisomerase IV subunit A [Yersinia pestis D106004]
 gi|262364715|gb|ACY61272.1| DNA topoisomerase IV subunit A [Yersinia pestis D182038]
 gi|270336240|gb|EFA47017.1| DNA topoisomerase IV, A subunit [Yersinia pestis KIM D27]
 gi|294353197|gb|ADE63538.1| DNA topoisomerase IV subunit A [Yersinia pestis Z176003]
 gi|320016766|gb|ADW00338.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 757

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 284/756 (37%), Positives = 446/756 (58%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+EI +A LALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+
Sbjct: 178 VGMATDIPPHNVREIAQAVLALIDKPTTSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 NGRGSVRMRAVWKKEDGSA-----VITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRTNRVDLDQVMSHLFATTDLERSYRINMNMIGLDNRPSVKGLLEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ +  R +FR++ + +R+ IL+GLLIA+LNIDE+I IIR ED PKP+++ RFS
Sbjct: 353 EWLVFRRQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDDPKPLLMQRFS 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AAAYGD-----DRRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660
               +   + KLL+ S  G  F+   ++++A  R GKT + +    K+   +++    D 
Sbjct: 587 EHVLMAPDSQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDM 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKICEGLTW-IDS 714
           +  +    ++L+F +  +PE+S+GKG ++ S        G       F +    +  +  
Sbjct: 647 LLSITAVGRMLMFPVADLPELSKGKGNKIVSIPAAQAAAGEDRLAWLFVLPPQTSITLHF 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  GS +P+G  R  + 
Sbjct: 707 GKRKLTLRPEDLQKFRAERGRKGSPLPRGLQRIDRI 742


>gi|205354091|ref|YP_002227892.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858433|ref|YP_002245084.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205273872|emb|CAR38872.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710236|emb|CAR34593.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 752

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|294634296|ref|ZP_06712837.1| DNA topoisomerase IV, A subunit [Edwardsiella tarda ATCC 23685]
 gi|291092289|gb|EFE24850.1| DNA topoisomerase IV, A subunit [Edwardsiella tarda ATCC 23685]
          Length = 758

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 279/756 (36%), Positives = 448/756 (59%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +N + V+LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTHDNSERVALRAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  V++   ++    EP   P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSRYAEVLLSELGQGTVEYTANFDGTLQEPKYLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A +AL+DNP+ S++ LL +I GPDFPT   I+  R+ I + YR
Sbjct: 178 VGMATDIPPHNAREVANALVALLDNPDSSLDDLLTHIQGPDFPTEAEIITPRDEIRKIYR 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  EE       IV++ +P+Q   ++++E+IA  + +K++P++ED+RDE
Sbjct: 238 TGRGSVRMRAVWRKEEGE-----IVISALPHQTSGAKVLEQIASQMRSKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D +M  +F  +D+E  + +N+N++ + R P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRSNRVDFDQVMNHLFATTDLEKSYRINLNMIGLDRRPAVKDLREILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL++RRE + RR ++R++ + +R+ IL+GLLIA+LNIDE+I +IR ED+PKPV+V+RF 
Sbjct: 353 EWLSYRRETVRRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHLIRTEDEPKPVLVARFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL L+LR L +LEE +I+ E D L  E++++ +LL S ++    I  EI   
Sbjct: 413 LSETQAEAILELKLRQLARLEEMKIRGEQDELAQERDRLQALLASERKLATLIKKEIIAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +  +      R +        KA  +   +  EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AQNYGDA------RRSPLHQRAEAKAMSEHDFVPSEPVTIVLSESGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LNYKAGDSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S  G  F+   S+++A  R GK  L +    K+   + + GD   
Sbjct: 587 EHVLMAADNQKLLMASDAGYGFVCTFSDLVARNRAGKAMLTLPENAKVLAPLAIHGDDDM 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDS 714
           +  + +  ++L+F +  +P++S+GKG ++ S               +     +    +  
Sbjct: 647 LLAITQAGRMLMFPVHDLPQLSKGKGNKIVSIPAAQAAAGEDTLKWLLVLAPQTTLTLHV 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  G+ +P+G  R  + 
Sbjct: 707 GKRKLVMKPQDLQKFRAERGRKGTQLPRGLQRVERV 742


>gi|152996848|ref|YP_001341683.1| DNA topoisomerase IV subunit A [Marinomonas sp. MWYL1]
 gi|150837772|gb|ABR71748.1| DNA topoisomerase IV, A subunit [Marinomonas sp. MWYL1]
          Length = 765

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 294/758 (38%), Positives = 459/758 (60%), Gaps = 27/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  +       + +SL+   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSELSNFESN--ETLSLKDYTEKAYLNYSMYVILDRALPHIGDGLKPVQRRIIYAMSELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 59  LKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 118

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ A+++L+ V +  VD+   ++    EP V PS+ PNLL NGT+GIA
Sbjct: 119 SFAAMRYTESRLSKYADVLLREVSQGTVDWTPNFDGTLQEPSVLPSRLPNLLLNGTTGIA 178

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++EI  A + L++NP   ++ LL ++ GPDFPTGG I+  +  IV  Y 
Sbjct: 179 VGMATDIPPHNLREIGGACIHLLNNPNAELDDLLNFVQGPDFPTGGEIITPKSDIVRLYE 238

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RAR+ +EE       IVV E+P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 239 TGKGQIKARARFTIEEGE-----IVVNELPHQVSGSKILEQIAAQMQAKKLPMVVDLRDE 293

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ PK+  +D D +M  +F  +D+E  + +NMNV+ +  +PQV PL   L 
Sbjct: 294 SDHENPTRLVIVPKSNRVDIDSVMTHLFATTDLEKSYRVNMNVIGLDGLPQVKPLKNFLS 353

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R +V+ RR  FR+  ++ R+ IL+GLLIAYLNIDE+I IIR E+KPK  +++RF 
Sbjct: 354 EWLRFRIDVVRRRLQFRLDKVNNRLHILEGLLIAYLNIDEVIEIIRTEEKPKVELMARFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q ++IL L+LR L KLEE +IK E D L  E+++++ LL+S ++    I  EI+E 
Sbjct: 414 LSDMQAESILELKLRHLAKLEEMRIKGEQDELEKERKQLEGLLSSDRKLKKLITEEIQEA 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F        RRT       A +A  ++ ++  +PITVVIS +GWIR+ K H +D++ 
Sbjct: 474 IDDFGD-----DRRTPIVARKEA-QAFSEEDLLSNDPITVVISKQGWIRAAKGHDIDVNG 527

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD   ++    +   ++LL+++G+ Y++ A  L S RG GE I   I L  +  I
Sbjct: 528 LSYKSGDEFLVSTKGRSNQTLVLLASNGRTYSIKAHTLPSARGQGEPITGRISLEKDATI 587

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
           V+A + +     L+ S  G  F+ +  ++ A  + GK  L +    ++   V V      
Sbjct: 588 VSAVLDNEEAHYLIASDAGYGFVAQLKDLYAKNKAGKATLSLPKGARVMAPVPVQDPVSG 647

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            V  +    ++L F +  +P+M++GKG ++ S        ++  +  + C +  + L   
Sbjct: 648 RVVAISNEGRMLAFDVASLPQMAKGKGNKMLSIPSSRAADREELVIALACVQPND-LLTA 706

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R  + +E DL  +LG+RG  G  +P+GF R    
Sbjct: 707 YAGKRFISFTEKDLEEYLGERGRRGLKLPRGFQRIDSL 744


>gi|319783739|ref|YP_004143215.1| DNA gyrase subunit alpha [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169627|gb|ADV13165.1| DNA gyrase, A subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 933

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 269/859 (31%), Positives = 411/859 (47%), Gaps = 121/859 (14%)

Query: 6   ISNSNTL-----VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +++  T          ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A
Sbjct: 1   MTDQKTPRGADGGPTGIEPISIVEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
             E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+
Sbjct: 61  AHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  AA RYTEAR+T+VA  +L+ +D+D VDF+DTY+   SEP V P++FPNLL NG+
Sbjct: 121 IDGDPPAAMRYTEARLTKVAHELLEDIDKDTVDFQDTYDASGSEPKVLPARFPNLLVNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E I GPDFPTGGI++  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIY 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +R R  +E+ G     I++TE+PYQV KS +IEK+AEL+  KRI  + D
Sbjct: 240 SAYSTGRGSIVMRGRVNIEQRGNDRESIIITEVPYQVNKSSMIEKMAELVRDKRIEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES      V+    R    D+++  ++  + ++T F  NM  L+ G  P+VM L  +
Sbjct: 300 IRDESDRQGYRVVIELKRDAVADVILNQLYRFTPLQTSFGANMVALN-GGKPEVMNLTDM 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           LK ++A R EV+ RR+ F ++    R  +L GL IA  NIDE+I +IR    P+      
Sbjct: 359 LKAFVAFREEVITRRTKFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQL 418

Query: 420 ----------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++L+E Q  AIL LRL+ L  L   +I  EL
Sbjct: 419 MERRWPSGDVESLILLIDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + + AE      +L+S  +    +  E+  V++ F        RRT   E++        
Sbjct: 479 NTIGAEIIDYLDILSSRARVQQIVKDELAAVRDEFGTP-----RRT---ELTDGGSDMED 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+I+          +      S +  KE D +     A+T   +
Sbjct: 531 EDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPV 590

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G  Y      L   + +  G+A+  ++ L   + I T               ++
Sbjct: 591 LFFSSRGIVYKEKVWRLPIGNPQSRGKALINMLPLEQGERITTIMPLPEDEASWGELYVM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSS-EEKMKLVVKVTG-DHVAVVGENRKLLIF 673
             +++G     + S+ +   R GK  +K+    +++  V   T  D V +   + + + F
Sbjct: 651 FATTRGTVRRNDLSDFVQVNRNGKIAMKLEEEGDEILGVETCTDKDDVLLTASSGQCIRF 710

Query: 674 SIDQIPE-MSRG----KGV------RLQSYKDGGISDV---------------------- 700
           S+  +    SR     +G+      R+ S       D                       
Sbjct: 711 SVGDVRVFQSRNSVGVRGITMAETDRIISMSVIEHVDASPAERAAYLKRAAAERRLATET 770

Query: 701 ------ICFKICE------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
                 I     E                      +      Y +  +     L  RGG 
Sbjct: 771 AGEEEEIALTNEEIGEETELSDSRYEELKAHEQYVLTVTEFGYGKRSSSYDFRLTGRGGK 830

Query: 737 GSLVPKGFP--RSGKFLSS 753
           G            G+ +++
Sbjct: 831 GIRATDVSKAAEIGRLVAT 849



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 74/273 (27%), Gaps = 20/273 (7%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             + G R TT   +   + +  +  ++       V  N        + +  ++    +EG
Sbjct: 624 PLEQGERITTIMPLPEDEASWGELYVMFATTRGTVRRNDLSDFVQVNRNGKIAMKLEEEG 683

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV- 607
           D +         D +LL ++ G+      G++   +         I +     I++  V 
Sbjct: 684 DEILGVETCTDKDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAETDRIISMSVI 743

Query: 608 --YDSTCKLLVVSSKGNAFIVEESE-IIANTRKGKTFLKVSSEE-----KMKLVV----K 655
              D++                    +   T   +  + +++EE     ++        K
Sbjct: 744 EHVDASP----AERAAYLKRAAAERRLATETAGEEEEIALTNEEIGEETELSDSRYEELK 799

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD--VICFKICEGLTWI 712
               +V  V E       S        RG KG+R             V  F +      +
Sbjct: 800 AHEQYVLTVTEFGYGKRSSSYDFRLTGRGGKGIRATDVSKAAEIGRLVATFPVGNDDQIM 859

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +                 R   G  +     
Sbjct: 860 LVSDGGTVIRVPVNGIRFASRATKGVTIFNTAE 892


>gi|168463617|ref|ZP_02697534.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633491|gb|EDX51905.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 752

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++ ++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYLLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|254427439|ref|ZP_05041146.1| DNA topoisomerase IV, A subunit [Alcanivorax sp. DG881]
 gi|196193608|gb|EDX88567.1| DNA topoisomerase IV, A subunit [Alcanivorax sp. DG881]
          Length = 745

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 438/750 (58%), Gaps = 23/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  ++  L+   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   + +
Sbjct: 1   MADEFESFPLKEYTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKSTSKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+++   AE++L  + +  V++   ++    EP + P++ PN+L NGT+GIAVGM+T I
Sbjct: 121 TESKLAPYAEVLLSELGQGTVEWLPNFDGTMDEPKLLPARLPNVLLNGTTGIAVGMSTDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+  A + L+ +P  S++ L++YI GPDFPT   ++     I+  Y  G+G  +
Sbjct: 181 PPHNLREVANACIHLLKDPGASLDDLMQYIKGPDFPTEAEVITPINDIIRMYAEGKGSLK 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
            RA +  E+       IVVT +PYQV  ++++E+IA+ +  K++P++ D+RDES  +   
Sbjct: 241 QRAVYEREDGD-----IVVTALPYQVSGAKVLEQIADQMNKKKLPMVSDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N+N++ +   PQV  LD IL EWL  R 
Sbjct: 296 RLVITPRSNRVDVEQLMSHLFASTDLEKNYRVNLNMIGIDGRPQVKSLDMILNEWLQFRM 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  +R+  +  R+ IL+GLL A+LNIDE+I IIR ED PKPV++ RF +++ Q +
Sbjct: 356 VTVRRRLQYRLDKVLERLHILEGLLAAFLNIDEVIHIIRTEDAPKPVLMERFGISDRQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E+E +++ L S  +    +A E+++  E +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELNEEREYLETTLGSMAKMKKLVAKELKDDAEKYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  ++  +P+TVV+S +GW+R+ K H VD+  L +K GD
Sbjct: 475 ----DRRSPLVERDDA-KALDETDLLSADPVTVVLSEKGWVRAAKGHEVDVEGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K +    +   +  + + G+ Y+LPA  L S RG GE +   +        + A +  
Sbjct: 530 KYKASAKGKSNQPVCFIDSTGRTYSLPAHTLPSARGQGEPLSGRVSPPSGASFMAAVMGK 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---VTGDHVAVVGE 666
                L+ +  G  F+V  ++++AN + GKT L V    ++           D +A+V  
Sbjct: 590 DKDAYLMSTDAGYGFVVRYADLLANKKAGKTVLNVPKGARVLSPQPIASTADDRIALVSN 649

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC------EGLTWIDSAGRSYN 720
             +LL+F + ++PEM RGKG ++ S     +++ + F         +    + +  R   
Sbjct: 650 EGRLLVFPVSELPEMVRGKGNKMMSIPGARVAERVEFVQDVQVVGPDDALTLYAGKRHLT 709

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               DL  + G+RG  G+ +P+GF      
Sbjct: 710 LKAGDLEHYYGERGRRGAKLPRGFQNVDAM 739


>gi|317482364|ref|ZP_07941384.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916244|gb|EFV37646.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA]
          Length = 883

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 217/763 (28%), Positives = 369/763 (48%), Gaps = 27/763 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++Y +LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYGTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 195 NVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S E+    L+  I GPDFPTG  I+   + I ++YR GRG  
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 276

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE++    
Sbjct: 277 TMRAVVNTEEIN-GRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 335

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  ++ W+ H+ 
Sbjct: 336 QRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFIRHWVNHQL 394

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTEN 426
           +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR  +              + + 
Sbjct: 395 DVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMGLLDIDQV 454

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR+L ++   +I +E + L  +      +L   ++Q   I  E+ E+   +
Sbjct: 455 QADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDILAKPERQRKIIGDELDEIVAKY 514

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                      +         A     +       +  +     RS       +     +
Sbjct: 515 GDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFIKRTKADEYRSQHRGGKGIKGTKLR 574

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D +       T + +L  +  G+ Y + A  L  G    +   +  L+    ++ I T
Sbjct: 575 EDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQFAPDESIQT 634

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------EKMKLVVK 655
                 Y+    L++ +  G       +E  +  + G   +++ ++      +++     
Sbjct: 635 VLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAAL 694

Query: 656 VT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-T 710
               D + +V +    L F  D   +  M R   GV+   +++      +     +    
Sbjct: 695 CNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAGVQGMKFRNDDSLLAMDVVPGDSDKD 754

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   + +        L  R G+G    +     G  + +
Sbjct: 755 LFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEGRGALVGA 797


>gi|294139240|ref|YP_003555218.1| DNA topoisomerase IV subunit A [Shewanella violacea DSS12]
 gi|293325709|dbj|BAJ00440.1| DNA topoisomerase IV, A subunit [Shewanella violacea DSS12]
          Length = 757

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 264/757 (34%), Positives = 436/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++  L  + V+ +S+R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MNDAIDLSLDGVEQMSMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSSQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  + +  VD+   ++    EP+V PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFAEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  +E+L+E++ GPD+PT   I+ SR  I + Y 
Sbjct: 181 VGMATDVPPHNTRELVAACVELLDNPKADLERLMEFVPGPDYPTEAEIITSRADITKIYA 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA + +E     +  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGKGSIKARAVYAIE-----NGEIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM  +F  +D++  F +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPVRIVVIPRSNRVDCDQLMAHLFATTDLQKNFRVNLNILGLNGRPQVKGLKQILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR + R+  +  R+ IL+ L++A+LNIDE+I IIR E+ PK  ++SRF 
Sbjct: 356 EWLEFRLTTVTRRITHRLDKVLARLHILEALMVAFLNIDEVIEIIRYEENPKAELMSRFK 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +++ Q DAIL+L+LR L KLEE +I SE   L  E++K+  LL+S ++    I  E+ + 
Sbjct: 416 VSDIQADAILDLKLRHLAKLEEMKITSEQGELATERDKLQLLLSSDRRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E S +   T  +     E +TVV+S +GW+R  K H +D + 
Sbjct: 476 GETYGD-----DRRSPLVERSESKALTEHEL-SPVEAVTVVLSEKGWVRCAKGHDIDGNG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+      L S R  GE I    +L+  + +
Sbjct: 530 LSYKSGDGFLCSAAGRSNQPSVFIGSTGRAFATETHTLPSARSQGEPITTRFNLSPGEVM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     L+ S  G  F+    ++++  + GK  L + +  K+     V     +
Sbjct: 590 EHVLLGDEDKFYLLASDAGYGFVGSYKDMVSRNKAGKALLSLPANAKVIKPKLVDKSKVE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-ID 713
            +  +    ++L+FS++ +P++S+GKG ++        K+        + + EG +  + 
Sbjct: 650 SILAITNEGRMLLFSMEALPQLSKGKGNKIIGIPTERAKNREELLTHLYVVPEGTSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|56415115|ref|YP_152190.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56129372|gb|AAV78878.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 752

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 449/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  I  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|315654384|ref|ZP_07907292.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
 gi|315491419|gb|EFU81036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
          Length = 847

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 235/768 (30%), Positives = 373/768 (48%), Gaps = 42/768 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V L   +++ Y+ YA+S I  RA+PD+RDG KPVHRR+I+ M + G      + K 
Sbjct: 30  RVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPNGGYSKC 89

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
            R+VG+V+G  HPHGD SVYD+L RL QP+  RYPL++GQGNFG+      AA RYTE +
Sbjct: 90  MRVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAPRYTECK 149

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ +DED VDF D Y+    EP V PS+ PNLL NG+ GIAVGMAT IP HN
Sbjct: 150 MAALAMEMVRDIDEDTVDFMDNYDGRSQEPTVLPSRIPNLLINGSEGIAVGMATRIPPHN 209

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ +AA   + NPE + E+     L+ I GPDFPTG  I+  R  I E+YR GRG   
Sbjct: 210 LREVADAAQWYLQNPEATREELLAACLQRIKGPDFPTGATIL-GRRGIEETYRTGRGSIT 268

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
            RA   VEE+  G  C+V TE+PYQV    L  KIA+L+   ++  + DIRDE S     
Sbjct: 269 QRAVVNVEELN-GRTCLVATELPYQVNPDNLQVKIAQLVKDGQLQGIADIRDETSDRAGT 327

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++  + ++  FP NM  L    VP+ + +DG +  W+AH+ +
Sbjct: 328 RIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANMLALVD-GVPRTLSIDGFIHYWIAHQVD 386

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQ 427
           V+ RR++FR+     R+ IL+G L A   +DE+IA+IR     +   V         E Q
Sbjct: 387 VIKRRTAFRLAKAQERLHILQGYLAALDALDEVIALIRRSPTAEDARVGLMDFLKVDEVQ 446

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL L+LR L  LE  +I  E   L A+      +L   ++Q + ++ E+ E+ + + 
Sbjct: 447 ADAILALQLRRLAALERQKILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWG 506

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  R+TT             + +I +E + V I+  G+ +                
Sbjct: 507 DE-----RKTTIVPFDGEMS---MEDLIPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKG 558

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +     +E D ++      + D +L  +  G+ Y   A  +  G    +   +  L+   
Sbjct: 559 IKGASLREEDQVEHFFTTSSHDWLLFFTNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQ 618

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-----EK 649
            ++ I        +     L++ +  G       ++   N   G   +K+  +     ++
Sbjct: 619 PDERIAQVLQVSSFADKDYLVLATRLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQ 678

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           +         D + +V  + + L F+   +Q+  M R   GV    ++       +    
Sbjct: 679 LVSACLADATDDLILVSRHGQSLRFNACDEQLRPMGRATSGVTGMRFRADDELLTMDVVR 738

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            E   ++      Y +        +  RGG+G  V       G  + +
Sbjct: 739 PEADLFV-VTEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGA 785


>gi|324018137|gb|EGB87356.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 117-3]
          Length = 752

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYAAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|240047185|ref|YP_002960573.1| DNA gyrase subunit A [Mycoplasma conjunctivae HRC/581]
 gi|239984757|emb|CAT04731.1| DNA gyrase subunit A [Mycoplasma conjunctivae]
          Length = 867

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 228/757 (30%), Positives = 392/757 (51%), Gaps = 32/757 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+    +   +   +L Y++S I  RA+PD+RDG KPVHRRI++ MSE+G+   +A+K
Sbjct: 62  KNNIIPKQIEEEMRNSFLDYSMSVIISRALPDVRDGLKPVHRRILYTMSELGIVHNSAYK 121

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD SVYDS+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYTE
Sbjct: 122 KSARIVGDVLGKYHPHGDTSVYDSMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYTE 181

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A L+++G+ ++ VDF   Y+  + EP V P +FPNLL +G SGIAVGMAT IP 
Sbjct: 182 ARMSKIASLMVEGIKKNTVDFIPNYDGSEQEPNVLPVRFPNLLVSGVSGIAVGMATKIPP 241

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  + + L  N +IS+E+L + + GPDFPTG  I      I ++Y+ GRG F +R
Sbjct: 242 HNLTEVINSFILLAKNNDISVEELAQSLPGPDFPTGATIF-GVSGIQQAYKTGRGSFILR 300

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E    G   I+  EIPY+V+K  +IEK+ +L+  KR+  ++D+RDE+      V+
Sbjct: 301 AKAKIETFNSGKSKIIFYEIPYEVKKPAIIEKVVQLVKEKRLQGIKDVRDETNRQGIRVV 360

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           F   +  +P++++  ++  +D +  + +NM  +     P+++ L  IL ++L H++E+  
Sbjct: 361 FEIKKGFNPEIILNQLYKETDFQISYSMNMLAIVK-GEPKLLNLKEILYQYLLHQKEINL 419

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           R  +F ++    ++ +L G+ +A  NIDE++ II++       +  +  RF L   Q  A
Sbjct: 420 RGLNFDLEKYKEKLNVLLGVKVAVENIDEVVKIIKSSSSDAQAQEKLGKRFDLNPIQTKA 479

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  L   ++ +E++ + AE  +I+ ++ S ++    +  +  E+   F+   
Sbjct: 480 IVDMRLGRLTSLAIEKLMTEIEQIKAEINRIEEIIASDEKLVQLVIDQHLEIINNFADP- 538

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+   E++      + + +I +  + + +++  +++              V  S 
Sbjct: 539 ----RRS---EINGEIGNIIDEDLIPRSDVIISLTDNNYVKRINLEEYRVQNRGGVGSST 591

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
               + D LK    A+T   +L++++  K + L    +      G+      L+ +  ++
Sbjct: 592 SSLYKDDYLKGIWFANTHTDLLIITSKAKIFKLRTHQIPDSTKQGKGIPFVNLLPIEKDE 651

Query: 601 DIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I T  V++       L+ VS  G              + GK  LK++  + +     V 
Sbjct: 652 QIYTLLVWNQDYAHHFLVTVSRLGLIKKTPLEFYKNINKNGKYALKLNENDTLVSAFIVK 711

Query: 658 GD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
            +    V +   + K+  F  D I    R   GV+     +          +  G     
Sbjct: 712 ENEPCEVLIGSSSGKVNKFDFDSIRSTGRVAMGVKGIKLTNDEFVIGASHSLS-GEYVFA 770

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                Y +  +        R   G        ++G  
Sbjct: 771 LGRFGYGKKTSIDEYRQTSRNSKGVKTLN-TEKAGSL 806



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 4/117 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMK 651
           I L +++ ++ A    S   +  +   G        E    +R  K    +++E+   + 
Sbjct: 748 IKLTNDEFVIGASHSLSGEYVFALGRFGYGKKTSIDEYRQTSRNSKGVKTLNTEKAGSLC 807

Query: 652 LVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
            +  + G+  A+ V +   L+  S+  I   SR  KGV++ + KD      +     
Sbjct: 808 FISIIKGNEEALIVTKKGILIRTSLQDINITSRNTKGVKIINIKDNDEIQSVTIVDK 864



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/382 (11%), Positives = 104/382 (27%), Gaps = 11/382 (2%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS------LDPDLLMESIFMLSDMETR 338
           ++  L       L+ +I    AE  RI     +        +D  L + + F        
Sbjct: 484 RLGRLTSLAIEKLMTEIEQIKAEINRIEEIIASDEKLVQLVIDQHLEIINNFADPRRSEI 543

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
                N++    +P+   +  +       R  +   R   R         + K   +  +
Sbjct: 544 NGEIGNIIDEDLIPRSDVIISLTDNNYVKRINLEEYRVQNRGGVGSSTSSLYKDDYLKGI 603

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                   +        +   R     +       +   +L  +E+ +    L     + 
Sbjct: 604 WFANTHTDLLIITSKAKIFKLRTHQIPDSTKQGKGIPFVNLLPIEKDEQIYTLLVWNQDY 663

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +  S      +   E  +      K         T        +    + +I   
Sbjct: 664 AHHFLVTVSRLGLIKKTPLEFYKNINKNGKYALKLNENDTLVSAFIVKENEPCEVLIGSS 723

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V   +   IRS    ++ +  +     + +  A H+ + + +  L   G        
Sbjct: 724 SGKVNKFDFDSIRSTGRVAMGVKGIKLTNDEFVIGASHSLSGEYVFALGRFGYGKKTSID 783

Query: 579 NLLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANT 635
                  + + ++ L          ++    +     L+V+ KG        +I   +  
Sbjct: 784 EYRQTSRNSKGVKTLNTEKAGSLCFISIIKGNEEA--LIVTKKGILIRTSLQDINITSRN 841

Query: 636 RKGKTFLKVSSEEKMKLVVKVT 657
            KG   + +   ++++ V  V 
Sbjct: 842 TKGVKIINIKDNDEIQSVTIVD 863


>gi|168231772|ref|ZP_02656830.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168262869|ref|ZP_02684842.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194469135|ref|ZP_03075119.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194455499|gb|EDX44338.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333761|gb|EDZ20525.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205348415|gb|EDZ35046.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 752

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 265/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|168242999|ref|ZP_02667931.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194446354|ref|YP_002042439.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450551|ref|YP_002047170.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|204928359|ref|ZP_03219559.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194405017|gb|ACF65239.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408855|gb|ACF69074.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|204322681|gb|EDZ07878.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205337904|gb|EDZ24668.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|322613577|gb|EFY10518.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621169|gb|EFY18027.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624232|gb|EFY21066.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628030|gb|EFY24819.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633147|gb|EFY29889.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636275|gb|EFY32983.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639370|gb|EFY36060.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647455|gb|EFY43944.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648640|gb|EFY45087.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653692|gb|EFY50018.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657800|gb|EFY54068.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663901|gb|EFY60100.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669086|gb|EFY65237.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672919|gb|EFY69026.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678090|gb|EFY74153.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681266|gb|EFY77299.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687803|gb|EFY83770.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195615|gb|EFZ80792.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199703|gb|EFZ84793.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202548|gb|EFZ87588.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207963|gb|EFZ92909.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212485|gb|EFZ97302.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215033|gb|EFZ99781.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222763|gb|EGA07128.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224155|gb|EGA08448.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230479|gb|EGA14597.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235169|gb|EGA19255.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239209|gb|EGA23259.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244433|gb|EGA28439.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247049|gb|EGA31015.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253469|gb|EGA37298.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256225|gb|EGA39961.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262600|gb|EGA46156.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267305|gb|EGA50789.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269292|gb|EGA52747.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 752

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|167551913|ref|ZP_02345666.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323307|gb|EDZ11146.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 752

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 449/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|197249133|ref|YP_002148101.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|238909975|ref|ZP_04653812.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|197212836|gb|ACH50233.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 752

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|271498908|ref|YP_003331933.1| DNA topoisomerase IV subunit A [Dickeya dadantii Ech586]
 gi|270342463|gb|ACZ75228.1| DNA topoisomerase IV, A subunit [Dickeya dadantii Ech586]
          Length = 758

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 283/756 (37%), Positives = 450/756 (59%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---MTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LSASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  AA+ALID P+  +E LL ++ GPDFPT   I+  R+ I + Y 
Sbjct: 178 VGMATDIPPHNVREVAAAAIALIDEPDTPLEALLRHVQGPDFPTEAEIITPRDEIRKMYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+       +V+T +P+QV  +R++E+IA  + AK++P+L+D+RDE
Sbjct: 238 SGRGSVRMRAVWRKEDGS-----VVITSLPHQVSGARVLEQIASQMRAKKLPMLDDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVLVPRSNRVDLDQVMNHLFATTDLEKSYRINMNMIGLDGRPAVKGLREILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA RR+ + RR +FR+  + +R+ IL+GLLIA+LNIDE+I IIRNED+PKPV++++F 
Sbjct: 353 EWLAFRRDTVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPVLMAKFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +I+ E D+L  E+++I +LL S ++    +  EI+E 
Sbjct: 413 LSDTQAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQIQALLASERKMNTLLKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E   A KA  +  +   EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AKAYGD-----DRRSPLHERGEA-KAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+ + A    +   ++ + + G++Y L    L S RG GE +   + L     I
Sbjct: 527 LSYKAGDAYRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGASI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660
               +     +LL+ S  G  FI   ++++A  R GK  L +    ++   +++    D 
Sbjct: 587 EQVLMAADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLPDNARVLPPLELQRDDDL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQS-----YKDGGISDVICFKICEGLTW-IDS 714
           +  +    ++L+F +  +P +S+GKG ++ S        G    +    I    +  + +
Sbjct: 647 LLTITAAGRMLLFPVADLPALSKGKGNKIVSIPAAQLASGDDRILWLMAIAPQSSVTLYA 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R Y+    +L  +   RG  G+ +P+G  R  + 
Sbjct: 707 GKRKYSLRPEELQKYQASRGCKGTSLPRGLQRVDRI 742


>gi|261344788|ref|ZP_05972432.1| hypothetical protein PROVRUST_06053 [Providencia rustigianii DSM
           4541]
 gi|282567233|gb|EFB72768.1| DNA topoisomerase IV, A subunit [Providencia rustigianii DSM 4541]
          Length = 751

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 263/747 (35%), Positives = 440/747 (58%), Gaps = 23/747 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+ + L+   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SEITHDGVERIPLQTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNA 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  +    VD+   ++   +EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELAHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A +AL++ P+++++ +++YI GPD+PT   I+ S E I + Y+ GRG
Sbjct: 182 TDIPPHNAREVASALVALLEKPKLNLDDIMQYIPGPDYPTEAEIISSPEDIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWEKEDGNA-----VITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW+ 
Sbjct: 297 NPTRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPSVKGLVEILNEWIT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ +  R + R++ + RR+ IL GLLIAYLNIDE+I IIR E++PKPV++SRF+++E 
Sbjct: 357 YRRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRAEEEPKPVLMSRFNISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ ++L S  +    I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELAKERDELQAILGSEARLNTLIKKEIQADAKAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A   +  + ++  EPITVV+S+ GW+RS K H ++ S L +K
Sbjct: 477 GD-----DRRSPLQEREEAKALSEHE-ILPSEPITVVLSDMGWVRSAKGHDIEPSNLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS K A    +    + L + G++Y++    L S R  GE +   + L     I    
Sbjct: 531 AGDSFKEAARGKSNQAAVFLDSTGRSYSVDPLELPSARSQGEPLTGKLTLPPGATIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
           +     K L+ S  G  FI   ++++   + GK  + +    K+   +++     D +  
Sbjct: 591 MAPEEQKYLMASDAGYGFICTFNDLVTKNKTGKALISLPENAKVLSPIELNNEKEDLLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY------KDGGISDVICFKICEGLTWIDSAGR 717
           + +  ++L+F +  +P++S+GKG ++ +           +   +     +    +    R
Sbjct: 651 ITKAGRMLLFPVSNLPQLSKGKGNKIINITGAQAASGEDLLVWLMVVPPQSAITLYFGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                  DL  +  +RG  G+ +P+G 
Sbjct: 711 KLKFKSEDLQKYRAERGRKGTTLPRGL 737


>gi|156932600|ref|YP_001436516.1| DNA topoisomerase IV subunit A [Cronobacter sakazakii ATCC BAA-894]
 gi|156530854|gb|ABU75680.1| hypothetical protein ESA_00382 [Cronobacter sakazakii ATCC BAA-894]
          Length = 756

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 271/756 (35%), Positives = 451/756 (59%), Gaps = 26/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTHDGAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++   +EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLNEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+ +AA++LID+P+ ++++LL+ + GPD+PT   I+ SR  I + Y+
Sbjct: 178 VGMATDIPPHNLREVAKAAVSLIDSPKTTLDELLDIVQGPDYPTEAEIITSRAEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+       +V++ +P+QV  +R++E+IA  + AK++P+++D+RDE
Sbjct: 238 SGRGSVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIASQMRAKKLPMVDDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++SRF 
Sbjct: 353 EWLAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPVLMSRFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E  +L  E+++I  +L S ++    +  EI+  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEMKIRGEQSDLEKERDQIQGILASERKMNTLLKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D  A
Sbjct: 473 ADAYGD-----DRRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAKA 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    ++   +   ++ + + G++Y L   +L S RG GE I   + L     +
Sbjct: 527 LSYKAGDGWLSSVKGKSNQPVVFIDSTGRSYALDPVSLPSARGQGEPITGKLTLPPGAVV 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S  G  F+   +++IA  R GK  + +     +   +++  D   
Sbjct: 587 EHMLMTGEEQKLLMASDAGYGFVCTFNDLIARNRAGKALITLPENAHVLKPLEIEHDDDM 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSY------KDGGISDVICFKICEGLTWIDS 714
           +  +    ++L+F +  +P++S+GKG ++ S       K       +     +    +  
Sbjct: 647 LLAITAAGRMLMFPVADLPQLSKGKGNKIISIPSADAAKGDDKLAYLTILPPQSTVTLHV 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       +L    G+RG  G+ + +G  R    
Sbjct: 707 GKRKIKLRPEELQKVHGERGRRGT-LMRGLQRIDSV 741


>gi|110668557|ref|YP_658368.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi
           DSM 16790]
 gi|109626304|emb|CAJ52762.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi
           DSM 16790]
          Length = 856

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 228/781 (29%), Positives = 384/781 (49%), Gaps = 39/781 (4%)

Query: 1   MGVDNIS--NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  D     +  T +   V+   +   +E+ Y+ YA+S I  RA+PD RDG KPVHRRI+
Sbjct: 1   MSSDAPERFDPETGIAAEVETARIEREMEQSYIDYAMSVIAGRALPDARDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM + G+   +A +KS+ IVGE +G  HPHGD ++Y++L R+AQ F  R PL+ GQGNF
Sbjct: 61  YAMHQSGISARSAHRKSSSIVGETMGDYHPHGDSAIYNALARMAQDFSMRNPLVDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGD  AA RYTEARM+ +AE +L  ++ D V+F   Y++  SEP V P+ FPNLL N
Sbjct: 121 GSVDGDPPAAMRYTEARMSPIAEELLDNIEMDTVEFTANYDDRLSEPAVLPAAFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+SGIAVGM+T+IP HN+ E+ +A + LI +PE ++E L+ ++ GPDFPTG  IV  + +
Sbjct: 181 GSSGIAVGMSTNIPPHNLGEVIDATIHLIHHPECTVEDLMNHVQGPDFPTGANIV-GQNA 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y+ GRG  RVRA + V++       IV+TE+P+Q  K+RL+E+IA+ + A  I  +
Sbjct: 240 IYKAYKTGRGRVRVRAEFDVQDD-----RIVITELPFQTNKARLVERIADNVNAGTIEGI 294

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES  D   V+    R  +PD++  +  +   +E+ F +    L     PQV+ L 
Sbjct: 295 RDLRDESDRDGIRVVVELKRGANPDIVK-NQLLEHHLESTFGVINLALVD-GQPQVLTLK 352

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--- 415
             L E+L HRR V+ RRS + +     R  IL+G L A   +D+++ IIRN         
Sbjct: 353 ETLHEYLEHRRTVVRRRSQYELDEKRDRAHILEGRLRALEQVDDVVDIIRNSTDRDNAKA 412

Query: 416 --------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                           +  F  +E+Q + I+ ++L SL  LE  +I+ E +++    E++
Sbjct: 413 ALRGEHVVESDERGESLPTFDFSEDQANHIVAMQLGSLTSLESDEIEDEYESVQERIERL 472

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
            ++LN+  +    +  E+  +++ ++                    A     ++  E   
Sbjct: 473 QTILNNPDELDAVVEDELATIRDKYADERRTRIIEDDGTVTHEDLIAQEDVVVVVTEDDY 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           +   +    RS       +     K+GD++     A+T D +L  ++ G+ Y L    + 
Sbjct: 533 IKRMSLEDFRSQHRGGKGIIGTSLKDGDTVSSVYVANTHDYLLYFTSHGQVYQLKTYQIP 592

Query: 582 SGRG--HGEAIQLLIDLNHNQDIVTA-------FVYDSTCKLLVVSSKGNAFIVEESEII 632
                  G++   L++L+  + I             D      +V+  G       +   
Sbjct: 593 EMSRTARGKSAVNLLELDDGEQITAVVNTAEMDIDDDEERYFTMVTQSGYIKRTSVNSFQ 652

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
                G   + + +++K+  V    G+  + +       + F+   +  + R  +GV   
Sbjct: 653 NIRSTGIIAISLGADDKLIDVEVTDGNRDIILGTRKGMAIRFNEGDVRSVGRSARGVHGI 712

Query: 691 SYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
             +    ++ +      +    +      Y +  +        R G G +  K   R+G 
Sbjct: 713 KLEDTDAVAALAAVDDDQDDWVLTVTEHGYGKRTDIDRYRQQSRNGKGLIDIKTNERNGH 772

Query: 750 F 750
            
Sbjct: 773 V 773



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           L V+  G     +       +R GK  + + + E+   V +V      D + ++    ++
Sbjct: 735 LTVTEHGYGKRTDIDRYRQQSRNGKGLIDIKTNERNGHVCEVETVGISDELFMMSRKGQI 794

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           L   +D I  + R   GV +   +D      +
Sbjct: 795 LRTPVDDISTVGRNTMGVIVMDLEDTDTVASV 826



 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++  G               +G+ +  +     N  +        + +L ++S KG   
Sbjct: 736 TVTEHGYGKRTDIDRYRQQSRNGKGLIDIKTNERNGHVCEVETVGISDELFMMSRKGQIL 795

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLV 653
                +I    R   G   + +   + +  V
Sbjct: 796 RTPVDDISTVGRNTMGVIVMDLEDTDTVASV 826


>gi|300958403|ref|ZP_07170543.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 175-1]
 gi|300314912|gb|EFJ64696.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 175-1]
          Length = 752

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLLPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|114798624|ref|YP_761439.1| DNA gyrase subunit A [Hyphomonas neptunium ATCC 15444]
 gi|114738798|gb|ABI76923.1| DNA gyrase, A subunit [Hyphomonas neptunium ATCC 15444]
          Length = 926

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 249/841 (29%), Positives = 386/841 (45%), Gaps = 111/841 (13%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
               ++ ++ +S+   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM+E G    
Sbjct: 20  KPPPQDGIEGISIESELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEGGNTPD 79

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSARIVG+VIGK HPHGD +VYD+LVR+AQPF    PL+ GQGNFG+ID D  AA 
Sbjct: 80  KPYSKSARIVGDVIGKYHPHGDSAVYDALVRMAQPFSMGVPLVDGQGNFGSIDNDPPAAM 139

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE+RMT+V   +L  +D+D VDF+D Y+ ++ EPVV P++FPNLL NG  GIAVGMAT
Sbjct: 140 RYTESRMTKVTTHLLADLDKDTVDFQDNYDGKEKEPVVLPAQFPNLLVNGGGGIAVGMAT 199

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +A LA+I++P I+ E L E + GPDFPTG  ++  +    ++   GRG 
Sbjct: 200 NIPPHNLGEIIDATLAMIEDPAITDEALCEIVPGPDFPTGA-LIMGQSGSRKALMTGRGS 258

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R++  +EE   G   I+V+EIPYQV K+ +I KIAEL+  K+I  + D+RDES  + 
Sbjct: 259 VIMRSKTEIEEAKNGREAIIVSEIPYQVNKAAMITKIAELVREKKIEGISDLRDESDRNG 318

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    D+++  ++  S +++ F +NM  L+ G  P++M L  +L+ ++  R 
Sbjct: 319 IRVVIELKRDASADVVLNQLYRFSQLQSSFAVNMLALN-GGRPELMNLRKVLEYFITFRE 377

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------- 419
           EV+ RR+   +     R  +L GL +A  NIDE+I +IR    P                
Sbjct: 378 EVIVRRTKHDLGKARDRAHVLVGLALAVANIDEVIRLIRTSPDPATARQRLLDKAWPQQD 437

Query: 420 --------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  L++ Q  +ILNL L  L  L   +I +E   L  +  
Sbjct: 438 MGPLIDLIADRRTRRGSEEGTIYLSDEQARSILNLPLHRLTGLGRDEIGNEAKGLADKIA 497

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           +   +L S  +    I  E+ EVKE F+       RR+ F +     +    + +IE E 
Sbjct: 498 EYLEILRSRPRILGIIKAELAEVKEKFAVP-----RRSQFVDGGVDME---DEDLIEVED 549

Query: 520 ITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +++ G+++                 S +  K+ D +     A T   IL  S+ G 
Sbjct: 550 MVVTVTHGGYVKRTPLSTYRTQNRGGKGRSGMSMKDEDFIVRVFSATTHTEILFFSSAGM 609

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNA 623
            Y      L        G+A+  +  L  ++ I +      +        ++  +  GN 
Sbjct: 610 VYKEKVWRLPIGGPTSRGKALVNIFPLAADERIESVMPLPDSEEAAEHLDVMFATRSGNV 669

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM- 681
                ++     R GK  +K+   + +  V   +  D V +     + + F++  +    
Sbjct: 670 RRNRLADFTRVNRAGKIAMKLDEGDGIVSVQLCSEKDDVLLTTALGQAIRFAVTDVRVFA 729

Query: 682 SR-GKGVRLQSYKDGGISDVICF------------------------------------- 703
            R   GVR            +                                       
Sbjct: 730 GRDSTGVRGIRLGAEDTVISMGILRHMGVTSEEARAYLKHAAAMRRAVTGEEEEISDDED 789

Query: 704 -KICEGLT--------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             + E                     A     +  +     +  RGG G +    + R  
Sbjct: 790 EVVAEAALSAERIAELGAAEEFIFTVADDGMGKRSSAYDYRVTGRGGKGLVAQNIWGRDK 849

Query: 749 K 749
           K
Sbjct: 850 K 850



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 11/111 (9%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV------SSEEKMKLVVKV----TGD 659
           +   +  V+  G        +     R GK  +             +K V +      GD
Sbjct: 808 AEEFIFTVADDGMGKRSSAYDYRVTGRGGKGLVAQNIWGRDKKGGPVKKVAQSFPVGDGD 867

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
            V +V +  +L+   +DQI    R   GV +    DG         + +G 
Sbjct: 868 EVMLVTDGGQLIRTPVDQIRIAGRSTGGVWVLRTGDGERVVSAARLVDDGE 918



 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 14/103 (13%)

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY----KDGGIS--DVICFKICEGLTWID 713
           +  V ++      S        RG KG+  Q+     K GG        F + +G   + 
Sbjct: 812 IFTVADDGMGKRSSAYDYRVTGRGGKGLVAQNIWGRDKKGGPVKKVAQSFPVGDGDEVML 871

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG---KFLSS 753
                           +  R   G  V     R+G   + +S+
Sbjct: 872 VTDGGQLIRTPVDQIRIAGRSTGGVWVL----RTGDGERVVSA 910


>gi|254993565|ref|ZP_05275755.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-064]
          Length = 807

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 233/727 (32%), Positives = 389/727 (53%), Gaps = 28/727 (3%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ
Sbjct: 1   PDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
            F  R  L+ G GNFG++DGD AAA RYTEARM++++  +L+ +++D +D+ D Y+  + 
Sbjct: 61  DFSYRNMLVDGHGNFGSVDGDMAAAMRYTEARMSKISMELLRDINKDTIDYADNYDGSER 120

Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223
           EPV+ P++FPNLL NG+SGIAVGMAT+IP+H++ E+ +  LAL  +P+I+I  L+EYI G
Sbjct: 121 EPVILPARFPNLLVNGSSGIAVGMATNIPTHHLGEVIDGVLALSHDPDITIRDLMEYIPG 180

Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283
           PDFPT G+I   R  I  +Y  GRG   VR R  +EE   G   IV+TEIPYQV K+RL+
Sbjct: 181 PDFPTAGMI-MGRSGIRRAYESGRGSITVRGRVDIEEKKNGKETIVITEIPYQVNKARLV 239

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           E+IAEL   K+I  +  + DES      ++    R +   +++ ++F ++ ++T F +NM
Sbjct: 240 ERIAELAREKKIDGITSLNDESDRSGMRIVIEVRRDISASVIVNNLFKMTALQTTFGINM 299

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
             L     P+V+ L  IL  +L H++ V+ RR+ F ++  + R  IL+GL IA  NID I
Sbjct: 300 LALVD-NHPKVLNLKEILYHYLEHQKVVIRRRTEFELRKAEARAHILEGLRIALDNIDAI 358

Query: 404 IAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           I +IR           ++++F+L++ Q  AIL++RL+ L  LE  +I+ E  NL+A    
Sbjct: 359 IKLIRGSKTSDVAKEGLMTQFNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALIND 418

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           + ++L   ++    I  E+ E+K  ++      +RRT     +    +   + +I +E +
Sbjct: 419 LKAILADDERILEIIREELEEIKVKYAD-----KRRTEIL--AGDLVSLEDEDLIPEEEV 471

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            + ++ RG+I+          +     +  +   E D ++  +   T D +L  +  GK 
Sbjct: 472 AITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKV 531

Query: 573 YTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y      +       +   I  L+ +   + +        +     L   +  G      
Sbjct: 532 YRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTT 591

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GK 685
            S+     + G   +++   +++  V    G  ++ +  ++ + + F  + I  M R   
Sbjct: 592 LSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAA 651

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR    ++     +    + +    +    + Y +        L  RGG+G        
Sbjct: 652 GVRGIRLREDDEV-IGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITE 710

Query: 746 RSGKFLS 752
           ++G  ++
Sbjct: 711 KNGNLVA 717



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K     L A+  +E D L        +  +++ +  G++   P  N+        A    
Sbjct: 597 KIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTA-AGVRG 655

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           I L  + +++   V +   K+LVV+ KG       S+     R G   KT         +
Sbjct: 656 IRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNL 715

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  VTG+  + ++  +  L+ F ID + +  R   GV+L    +      + 
Sbjct: 716 VAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 769


>gi|269958963|ref|YP_003328752.1| DNA gyrase subunit A [Anaplasma centrale str. Israel]
 gi|269848794|gb|ACZ49438.1| DNA gyrase subunit A [Anaplasma centrale str. Israel]
          Length = 902

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 240/834 (28%), Positives = 389/834 (46%), Gaps = 95/834 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   V  VS+   LE  YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    +
Sbjct: 1   MSGGVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+AR+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  +L  +DED VDFR  Y+E + EPV+ P++FPNLL NG  G+AVGM+T+IP
Sbjct: 121 EARLSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+ +A +A I+ PEI++++L+  I GPDFPTGG ++     I  ++  GRG   V
Sbjct: 181 SHNLGEVVDACVAYIERPEITLDELMAIIPGPDFPTGG-VIMGDAGIRSAFASGRGTIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R R   EE+  G   I++ EIPYQV K++L+E+I EL+  K+I  + D+RDES +    V
Sbjct: 240 RGRTHTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R +D  +++  +  L+ + T F +N  VL     P+VM L  I+  ++  R+EV+
Sbjct: 300 AIELKRQVDSQVVLNQLLGLTPLRTSFSINTLVL-ENNKPRVMSLPEIIATFVDFRKEVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------- 415
            RR+ FR++ I  +  +  G+ IA LNIDE+++II++                       
Sbjct: 359 VRRTRFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIR 418

Query: 416 ------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                       V    + LT  QV AIL +RL+ L  LE+ ++++EL++++A   +   
Sbjct: 419 NMIELVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKEKLEAELESMVALITEYTK 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L++     + +   + + K   +K  +    ++     + +     +  +       V 
Sbjct: 479 ILSTDSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVK 538

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-- 581
                  R+ K       A   KE D         T   +L  S  GK Y L    L   
Sbjct: 539 RVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLG 598

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIA 633
                G ++  +  L+  + I +             +   ++  ++ GN      S+   
Sbjct: 599 EPSSRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQY 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQ 690
               GK  + ++  +++         DHV +     K + F++  + +   R   GVR  
Sbjct: 659 VPSSGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAI 718

Query: 691 SYKDGGISDVICFKIC-------------------------------------------- 706
               G     +                                                 
Sbjct: 719 RLSAGDQVISMSVLHGIEASSELKESYLKIPVEARVAASHSGVVSDEVAPMLEEHAIERE 778

Query: 707 -------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                       +      + +  +     +  RGGVG +      R+G  ++S
Sbjct: 779 QFLEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVVAS 832



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
           S   +L V+  G        E    +R G   + +     +   +        D V ++ 
Sbjct: 786 SEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVVASFPVSQTDQVMLIT 845

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +  KL+  ++  I  + R  +GV L   + G     +   + 
Sbjct: 846 DKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVD 887



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY----KDGGISDVICFKICEGLT 710
             +   +  V EN      S  +    SRG GV + +     ++G +  V  F + +   
Sbjct: 784 ACSEQFILTVTENGFGKRTSAYEYRITSRG-GVGVVNILTTVRNGNV--VASFPVSQTDQ 840

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    +            +  R   G  + K   +  K +S
Sbjct: 841 VMLITDKGKLIRIAVTDIRVVGRSTQGVTLFK-TEKGEKVVS 881


>gi|187735780|ref|YP_001877892.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835]
 gi|187425832|gb|ACD05111.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835]
          Length = 873

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 219/801 (27%), Positives = 371/801 (46%), Gaps = 71/801 (8%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    +K V +   L   +L Y++S I  RA+PD+RDG KP  RRI++AM E+ L  G  
Sbjct: 1   MENNRIKPVDVASELSTSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMKELNLSPGGK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            +K ++IVG+ +G  HPHGD ++Y +LV +AQ +  R  L+ GQGNFG  DGD  AA RY
Sbjct: 61  TRKCSKIVGDTMGNYHPHGDAAIYGTLVNMAQDWSMRDILVIGQGNFGTPDGDPPAAARY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+++ +   ++  +D+D VDF  TY+ E +EP VFPS FPNLL NG +GIAVGMAT++
Sbjct: 121 TEAKLSGMGVALMADLDKDTVDFVPTYDNEHTEPTVFPSAFPNLLVNGGTGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +   A+IDNP +++E+L +YI GPDFPTGG ++     I   +R GRG  R
Sbjct: 181 PPHNLGEVVDGICAVIDNPHMTVEELRQYIKGPDFPTGGDVL-GFSGIDNYFRTGRGSVR 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  +E    G   +++ E+PY V ++ L E+IAEL   K +  +  IRD S E   I
Sbjct: 240 IRGKIDMEVTDSGKDLLIIREVPYGVNRAALQERIAELYKDKILTDISGIRDLSDEKTCI 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
                 R   P ++M  ++ L+ MET F +   +      P+ + +   +  ++ HRREV
Sbjct: 300 E-IELKRDARPQVVMNQLYKLTSMETSFAV-NMLAIHDNRPKTLAMMDAINFYIEHRREV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------- 415
           + RR+ + +   ++  E L+  L+A  ++D+ I+IIR+                      
Sbjct: 358 VVRRTRYLLGDAEKDAERLEAFLLALHHMDDFISIIRDSKNRDEARERLQNYTFSTQTAE 417

Query: 416 -----------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                      +   R+  TE QV++IL+LRL  L  LE  +I  E   LL   +    +
Sbjct: 418 SLGILIRSQASIQGDRYVFTERQVNSILDLRLYQLTALENDKISGEYAELLVRIKDYLDI 477

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L +  +    +  E++ +K+ ++       R T     S        + +I  + + V I
Sbjct: 478 LANESRVLGIVKDELKAIKDKYATP-----RVTRIIPFSGDMA---IEDLIPNDTMIVTI 529

Query: 525 SNRGWIRSLKSHSVDLSAL--------------HFKEGDSLKIALHAHTTDRILLLSTDG 570
           ++ G+I+   S    + A                  E D ++    A   D ++  +  G
Sbjct: 530 THSGYIKRTNSAEYRVQARGGKGVKAATTRGAKKDAEADFIEHLFAAQNHDYLMFFTNTG 589

Query: 571 KAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--------------DSTCKL 614
           + Y       +  +    G  I+ L+DL   + I                    + +  +
Sbjct: 590 RVYVDRVYEIDEAARSAQGRNIKNLLDLQPEEAIAAILRLERRVDEKGNDITFAEGSGNV 649

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  +  G       ++     + G   + +     +      +G D + +V  +   + F
Sbjct: 650 VFATKDGTVKKTSLNDFANYRKAGIIAINLEEGNSLVNAELTSGADEIVLVTHDGMSIRF 709

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
             + +    R   GVR    + G     +     +  T + ++     +  +        
Sbjct: 710 PEEDLRTQGRNTIGVRGIRPRAGDYVVALAIVDPQK-TLLVASENGLGKRTSFDEYRTQG 768

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           RGG G        ++GK +S+
Sbjct: 769 RGGTGIKTMNCTDKTGKVVSA 789



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 89/276 (32%), Gaps = 8/276 (2%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            +  +Y +       +      +    +   Q   I   +    E    +     RR   
Sbjct: 576 AQNHDYLMFFTNTGRVYVDRVYEIDEAARSAQGRNIKNLLDLQPEEAIAAILRLERRVDE 635

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
                         +   +  TV  ++     + +     + A++ +EG+SL  A     
Sbjct: 636 KGNDITFAEGSGNVVFATKDGTVKKTSLNDFANYR--KAGIIAINLEEGNSLVNAELTSG 693

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
            D I+L++ DG +   P  +L +   +   ++ +        +V   + D    LLV S 
Sbjct: 694 ADEIVLVTHDGMSIRFPEEDLRTQGRNTIGVRGIRP-RAGDYVVALAIVDPQKTLLVASE 752

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSI 675
            G        E     R G     ++  +K    +   V    D + ++    + +   +
Sbjct: 753 NGLGKRTSFDEYRTQGRGGTGIKTMNCTDKTGKVVSATVVSDEDELMLMTTAGQSVRIKV 812

Query: 676 DQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT 710
             + E  R  +GV+L +  +G     I   I +   
Sbjct: 813 ATVRETGRATQGVKLMTLNEGESIQDISIVIPDDED 848


>gi|16761950|ref|NP_457567.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143437|ref|NP_806779.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052530|ref|ZP_03345408.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213424351|ref|ZP_03357175.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213581150|ref|ZP_03362976.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213647440|ref|ZP_03377493.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289827115|ref|ZP_06545904.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25292861|pir||AF0888 topoisomerase IV chain A [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504252|emb|CAD03006.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139071|gb|AAO70639.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 752

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 449/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|161616162|ref|YP_001590127.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161365526|gb|ABX69294.1| hypothetical protein SPAB_03964 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 752

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 265/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|16766474|ref|NP_462089.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167990276|ref|ZP_02571376.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197265491|ref|ZP_03165565.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|20141710|sp|P26973|PARC_SALTY RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|16421730|gb|AAL22048.1| DNA topoisomerase IV, subunit A [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197243746|gb|EDY26366.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205331166|gb|EDZ17930.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248304|emb|CBG26141.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995364|gb|ACY90249.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159728|emb|CBW19247.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|321225853|gb|EFX50907.1| Topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|332990040|gb|AEF09023.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 752

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 449/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|261819693|ref|YP_003257799.1| DNA topoisomerase IV subunit A [Pectobacterium wasabiae WPP163]
 gi|261603706|gb|ACX86192.1| DNA topoisomerase IV, A subunit [Pectobacterium wasabiae WPP163]
          Length = 756

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 276/752 (36%), Positives = 453/752 (60%), Gaps = 23/752 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  ++++LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+EI  AA+ L++NP+ S++ LL+++ GPDFPT   I+  R+ + + Y+ GRG
Sbjct: 182 TDIPPHNVREIAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E 
Sbjct: 357 FRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D+L  E++++ +LL S ++  N I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASERKLSNLIKKEIQSDAQAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E S + KA  +   +  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLHERSES-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS +      +   ++ + + G++Y L   +L S RG GE +   +       I    
Sbjct: 531 AGDSFRAVAKGKSNQPVVFIDSTGRSYALDPISLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +      LL+ S  G  F+   ++++A  R GK  + +    K    +++ GD   +  +
Sbjct: 591 MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALTPIEIKGDDNLLMAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRS 718
               ++L+F +  +P++S+GKG ++ S      ++       +     +    +    R 
Sbjct: 651 TAAGRMLLFPVSDLPQLSKGKGNKIVSISSADFAEGKDRLTWLYLLPPQASVTLYFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                N+L  + G+RG  G+L+ +G  R  + 
Sbjct: 711 LVLRPNELQKYQGERGRKGTLL-RGLQRIDRI 741


>gi|52424930|ref|YP_088067.1| DNA topoisomerase IV subunit A [Mannheimia succiniciproducens
           MBEL55E]
 gi|52306982|gb|AAU37482.1| GyrA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 748

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 277/746 (37%), Positives = 444/746 (59%), Gaps = 22/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  E ++ + LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEINYEGIEQMPLRTFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AEL+L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKFAELLLGELGQGTVDYQPNFDGTILEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+ +++ +L  + GPDFPT   I+  +E I + Y  GRG
Sbjct: 182 TDIPPHNLNEIADAAVMLLDNPKATLDDILTLVQGPDFPTEAEIISPKEEIRKIYENGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I++T +P+Q   S++I +IAE + AK++P++EDIRDE+  +
Sbjct: 242 SVKMRAVWKKEDGE-----IIITALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D + LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL+
Sbjct: 297 NPVRIVLVPRSNRVDSEALMAHLFATTDLEKNYRVNMNMIGLDNKPAVKNLLQILTEWLS 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IAYLNIDE+I IIRNED+PKPV+++RF L++ 
Sbjct: 357 FRRSTVTRRLQYRLDKVLSRLHILQGLMIAYLNIDEVIHIIRNEDEPKPVLMARFELSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILNLRLR L KLEE+++++E D L  E+ +++ +L+S ++    I  EI++  + +
Sbjct: 417 QAEAILNLRLRHLAKLEEHELQAEKDQLEQERAQLEQILSSERRLNTLIKKEIQQDAKTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       RR+   E + A KA  +  MI  EP+TV++S  GW+R  K H +D   L++K
Sbjct: 477 ASP-----RRSPIVERAEA-KAISESEMIPAEPVTVILSEMGWVRCAKGHDIDPQGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         ++   + + + G++Y L   +L S R  GE +   + L     +    
Sbjct: 531 AGDKYLAHACGKSSQPAVFIDSSGRSYALDPLSLPSARSQGEPLTGKLTLPAGASVDYLL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-- 664
           + +   +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      +V  
Sbjct: 591 IENENQQLLMASDAGYGFICKFEDLIARNKAGKAVISLPENAKVLPPKNIENSTALLVAL 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DSAGRS 718
               ++LIF +  +P +S+GKG ++ +      K+     V    I E  + +  S  R 
Sbjct: 651 TAAGRMLIFPVKDLPSLSKGKGNKIVTIPAASAKERTDLLVKLLLISENSSLVFHSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                 DL  +  +RG  G+ +P+G 
Sbjct: 711 ITLKPEDLQKYRAERGRKGTQLPRGL 736


>gi|322716173|gb|EFZ07744.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 749

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 266/745 (35%), Positives = 446/745 (59%), Gaps = 25/745 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR
Sbjct: 3   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 62

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARM 136
            VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+
Sbjct: 63  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 122

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN+
Sbjct: 123 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 182

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W
Sbjct: 183 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLF 314
             E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ 
Sbjct: 243 TKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 297

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + R
Sbjct: 298 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L
Sbjct: 358 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILEL 417

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        
Sbjct: 418 KLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD-----D 472

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A
Sbjct: 473 RRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAA 531

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +   +   ++ + T G++Y +    L S RG GE +   + L     +    +     KL
Sbjct: 532 VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKL 591

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLI 672
           L+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + +  ++L+
Sbjct: 592 LMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLM 651

Query: 673 FSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           F +D +P++S+GKG ++ +         D G++ +        LT      R       +
Sbjct: 652 FPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIKLRPEE 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L   +G+RG  G+ + +G  R  + 
Sbjct: 711 LQKVVGERGRRGT-LMRGLQRIDRI 734


>gi|197294339|ref|YP_001798880.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense]
 gi|171853666|emb|CAM11549.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense]
          Length = 819

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 213/761 (27%), Positives = 377/761 (49%), Gaps = 17/761 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I+ +  L +  +K V+L   + + +L+YA+S I  RA+PD++DG KPV RRI++ M E+ 
Sbjct: 2   INQNPNLNQGKIKEVNLSAEMRKSFLSYAMSVIVARALPDIQDGLKPVQRRILYGMKELS 61

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +   +++KK+ARIVG+V+GK HPHGD S+Y+++VR++Q F  RYPL+ G GNFG+IDG  
Sbjct: 62  VYSNSSYKKAARIVGDVMGKYHPHGDSSIYEAMVRMSQDFSYRYPLVDGHGNFGSIDGHK 121

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE +M ++A  +++ +D++ ++F D Y+  + EP+V P+  PNLL NG +GIAV
Sbjct: 122 AAAMRYTEVKMAKIAMELIKNIDKETIEFVDNYDGSEKEPLVLPTAIPNLLINGATGIAV 181

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP+HN+ E+ +  +A I +  ISI  L++YI GPDFPTGG ++   + +  +Y+ 
Sbjct: 182 GMATKIPTHNLAEVVDGLIAYIKDKNISILGLMQYIKGPDFPTGGELLG-LKGLENAYKT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   ++A+  + E   G   IVVTEIPYQ++KS LIEKIA L+  K I  + D+RDES
Sbjct: 241 GQGSVIIKAKTHILEEK-GKTLIVVTEIPYQIKKSALIEKIAFLVKDKVIEGITDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +     ++    ++ +  +++  ++  S +   F +NM  L   + PQ++ L  IL+ + 
Sbjct: 300 SRQGMKIVIELKKNANSKVILNQLYKHSPLRISFGINMVALVD-KKPQLVSLKTILEAFF 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
             R +V+ ++  F ++    R  ++   L    +I   I +I+N    K      + ++ 
Sbjct: 359 NFRIQVINKQKFFELKKAQARKHLVFAFLTILKDIQNAIKLIKNSSDTKDAQQKLMDQYQ 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
               Q  AIL + L+ L   E  ++  E   L  E  +  S++ S  ++   +  E+ E+
Sbjct: 419 FDAIQSKAILEMSLQRLSNQETQKLFIEEQKLTKEIAECQSIIESQPKKEKILEKELLEI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-LKSHSVDLS 541
           K+ +              +    D    ++ +I       +           K      +
Sbjct: 479 KKKYQDERRTVLNFDAALDDKDEDLIEQKEIIITITNKGYIKVTDAEFYRQQKRGGKGAA 538

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +   E D ++  L   T + +L  +  G+ Y L    +       +   +  L++L   
Sbjct: 539 GMKIYEEDFIEHLLFTSTHNFLLFFTNKGRVYQLKGYQINLSDKSSKGIPLVNLLNLKPG 598

Query: 600 QDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + + +             L   + KG        E       GK  + +  ++++  V  
Sbjct: 599 ETLTSCASVKNFDQPDNYLFFATKKGIVKKTSLKEYSNIRENGKIAIVLRDDDEVLTVAN 658

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKIC-EGLTW 711
             G  ++ +   N   + F   Q  + SR  +GV     K G  +     F    +  + 
Sbjct: 659 TNGRQNIILASNNGNAICFDESQTRKTSRQSQGVIGMDLKKGEFLIGAALFDPNSKDQSI 718

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    + Y +  +     +  R G GS   K   ++G+ ++
Sbjct: 719 LVMTEKGYGKITSVNQYRIQSRNGKGSKTIKINSKTGRLIA 759



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 69/191 (36%), Gaps = 10/191 (5%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++                 A+  ++ D +    + +    I+L S +G A          
Sbjct: 625 IVKKTSLKEYSNIRENGKIAIVLRDDDEVLTVANTNGRQNIILASNNGNAICFDESQTRK 684

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGK 639
                + +  + DL   + ++ A ++D   K   +LV++ KG   I   ++    +R GK
Sbjct: 685 TSRQSQGVIGM-DLKKGEFLIGAALFDPNSKDQSILVMTEKGYGKITSVNQYRIQSRNGK 743

Query: 640 ----TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RG-KGVRLQSYK 693
                 +   +   + L    +   + +  +  +++  SI  I     +  +G ++   K
Sbjct: 744 GSKTIKINSKTGRLIALKTAASSQDLIISSDKGQVIRVSISDIKNTKHKATQGTKIIKLK 803

Query: 694 DGGISDVICFK 704
            G  + ++  +
Sbjct: 804 TGHKAVLVAVE 814


>gi|269137555|ref|YP_003294255.1| DNA topoisomerase IV subunit A [Edwardsiella tarda EIB202]
 gi|267983215|gb|ACY83044.1| DNA topoisomerase IV subunit A [Edwardsiella tarda EIB202]
 gi|304557628|gb|ADM40292.1| Topoisomerase IV subunit A [Edwardsiella tarda FL6-60]
          Length = 758

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 285/756 (37%), Positives = 452/756 (59%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +N + V+L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTHDNSERVALHAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LSASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP   P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSRYAEILLSELGQGTVDYVANFDGTLQEPKFLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A +AL+DNP+ S++ LL +I GPDFPT   I+  R+ I + YR
Sbjct: 178 VGMATDIPPHNAREVAAALVALLDNPQSSLDDLLTHIQGPDFPTEAEIITPRDEIRKIYR 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  EE       IV++ +P+Q   ++++E+IA  + AK++P+++D+RDE
Sbjct: 238 TGRGSVRMRAVWRKEESE-----IVISALPHQTSGAKVLEQIASQMRAKKLPMVDDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  + +NMN++ + R P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRSNRVDLDQLMNHLFATTDLEKSYRINMNMIGLDRRPAVKDLREILS 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL++RRE + RR ++R++ + +R+ IL+GLL A+LNIDE+I IIR+ED+PKPV+V+RF 
Sbjct: 353 EWLSYRRETVRRRLNYRLEKVLKRLHILEGLLCAFLNIDEVIHIIRSEDEPKPVLVARFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L +LEE +I+ E D L  E++++ +LL S ++    I  EI   
Sbjct: 413 LSDTQAEAILELKLRHLARLEEVKIRGEQDALAQERDRLQTLLASERKLGTLIKKEIMAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +  +     RR+   E S A +A  +   +  EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AETYGDA-----RRSPLQERSEA-RAMSEHDFVPSEPVTIVLSEGGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD+ + A    +   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LNYKAGDAFRAAARGKSNQPVVFIDSSGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S  G  F+   S+++A  R GK  L +    K+   +++ GD   
Sbjct: 587 EHVLMAADNQKLLMASDAGYGFVCTFSDLVARNRAGKAMLTLPENAKVLTPLEINGDDDM 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDS 714
           +  + E  ++L+F +  +P++S+GKG ++ S               +     +    +  
Sbjct: 647 LLAITEAGRMLMFPVHDLPQLSKGKGNKIVSIPAAQAAAGEDTLKWLLVLAPQTSLTLHV 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  G+L+P+G  R  + 
Sbjct: 707 GKRKLVMKPQDLQKFRAERGRKGTLLPRGLQRIERV 742


>gi|260599287|ref|YP_003211858.1| DNA topoisomerase IV subunit A [Cronobacter turicensis z3032]
 gi|260218464|emb|CBA33605.1| DNA topoisomerase 4 subunit A [Cronobacter turicensis z3032]
          Length = 756

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 269/756 (35%), Positives = 448/756 (59%), Gaps = 26/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTHDGAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++   +EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLNEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+ +AA++LID+P+ ++++LL+ + GPD+PT   I+ SR  I + Y+
Sbjct: 178 VGMATDIPPHNLREVAKAAVSLIDSPKTTLDELLDIVQGPDYPTEAEIITSRAEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+       +V++ +P+QV  +R++E+IA  + AK++P+++D+RDE
Sbjct: 238 SGRGSVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIASQMRAKKLPMVDDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ + RR ++R+  + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF 
Sbjct: 353 EWLVFRRDTVRRRLNYRLDKVMRRLHILEGLLVAFLNIDEVIEIIRGEDEPKPVLMSRFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E  +L  E++++  +L S ++    +  EI+  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEMKIRGEQSDLEKERDQLQGILASERKMNTLLKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D  A
Sbjct: 473 ADAYGD-----DRRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAKA 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+   +    T   ++ + + G++Y L   +L S RG GE +   + L     +
Sbjct: 527 LSYKAGDNWLSSAKGKTNQPVVFIDSTGRSYALDPVSLPSARGQGEPLTGKLTLPPGAVV 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S  G  F+   ++++A  R GK  + +     +   +++  D   
Sbjct: 587 EHMLMTGEDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVLKPLEIEHDDDM 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSY------KDGGISDVICFKICEGLTWIDS 714
           +  +    ++L+F +  +P++S+GKG ++ S       K       +     +    +  
Sbjct: 647 LLAITAAGRMLMFPVADLPQLSKGKGNKIISIPSADAAKGDDKLAYLTILPPQSTVTLHV 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       +L    G+RG  G+ + +G  R    
Sbjct: 707 GKRKIKLRPEELQKVHGERGRRGT-LMRGLQRIDSV 741


>gi|88854505|ref|ZP_01129172.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
 gi|88816313|gb|EAR26168.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
          Length = 858

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 232/763 (30%), Positives = 380/763 (49%), Gaps = 32/763 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +  V L+  ++  YL YA+S I  RA+P++RDG KPVHRR+I+AM + G      F 
Sbjct: 20  HDKIDQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVIYAMYDGGYRPDKGFS 79

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K  R++G+V+G+ HPHGD SVYD+LVRL QP+  RYPL  GQGNFG+   D AAA+RYTE
Sbjct: 80  KCTRVIGDVMGQFHPHGDSSVYDALVRLVQPWSLRYPLALGQGNFGSPGNDGAAAHRYTE 139

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            +M  +A  +++ ++ED V+F+D Y+    EP V PS+FPNLL NG+ GIAVGMAT+IP 
Sbjct: 140 TKMAPLAMEMVRDIEEDTVEFQDNYDGRTQEPKVLPSRFPNLLVNGSVGIAVGMATNIPP 199

Query: 194 HNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           HN++E+ E AL  + NPE + E+    L++ I GPDFPTG  I+   + I ++YR GRG 
Sbjct: 200 HNLREVGEGALWHLANPEATQEELIEALIQRIKGPDFPTGAQIL-GVKGIQDAYRTGRGS 258

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
             +RA   VEE+ +G  C+VVTE+PYQV    L  KIA+L+   ++  + DIRDE++   
Sbjct: 259 VTMRAVVSVEEL-QGRTCLVVTELPYQVNPDNLALKIADLVKDGKLAGIADIRDETSGRT 317

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            + ++    R     +++ +++  + ++  F  NM  +    +P+ + +DG +  W  H+
Sbjct: 318 GQRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVD-GIPRTLSIDGFITAWATHQ 376

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTE 425
            EV+ RR+ FR++  + R  IL+G L A   +DE+IA+IR        +  +++   + E
Sbjct: 377 IEVIVRRTQFRLRKAEERAHILRGYLKALDALDEVIALIRRSPTVEDARTGLIALLEIDE 436

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  E + +  E  +  +++ S ++Q + ++ E+ E+   
Sbjct: 437 IQARAILDMQLRRLAALERQKIIDENEEIELEIVEFKAIIASEQRQRDIVSEELTELLAK 496

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV------ISNRGWIRSLKSHSVD 539
           +        RRT        D +       E+  +TV        +     RS       
Sbjct: 497 YGD-----DRRTEIMLGFDGDMSMEDLIPEEEMVVTVTRGGYVKRTRSDNYRSQHRGGKG 551

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +     +  D +       T   +L  +  G+ Y   A  L  G    +   +   + L 
Sbjct: 552 VKGAQLRADDIVDHLFVTTTHHWLLFFTNTGRVYRAKAYELQEGGRDAKGQHVANFLALQ 611

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             ++I        Y++   L++ +  G       SE   N   G   + +   +++   +
Sbjct: 612 PGEEIAQILDIRDYETATYLVLATHNGLVKKTALSEYDTNRSGGIIAVNLREGDELVSAM 671

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            V   D V +V      + F+     +  M R   GV   S+++             G  
Sbjct: 672 LVENTDDVLLVSRKGMSIRFTASDEALRPMGRSTSGVMGMSFREDDRLLSASVVPDSG-Y 730

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   + +  +     +  RGG+G  V K     G    +
Sbjct: 731 VFVVTEGGFAKRTSADQYRVQGRGGLGIKVAKLDGARGDLAGA 773



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 6/178 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLN 597
            + A++ +EGD L  A+    TD +LL+S  G +    A +      G   +  + +   
Sbjct: 655 GIIAVNLREGDELVSAMLVENTDDVLLVSRKGMSIRFTASDEALRPMGRSTSGVMGMSFR 714

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSS--EEKMKLV 653
            +  +++A V   +  + VV+  G A      +     R G      K+     +    +
Sbjct: 715 EDDRLLSASVVPDSGYVFVVTEGGFAKRTSADQYRVQGRGGLGIKVAKLDGARGDLAGAL 774

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           +    D V VV  + K++  S+ ++P   R   GV    +        I       L 
Sbjct: 775 MVGDHDEVLVVLASGKVVRSSVAEVPAKGRDTMGVVFARFAAEDKIIAIARNSERNLE 832


>gi|212711190|ref|ZP_03319318.1| hypothetical protein PROVALCAL_02262 [Providencia alcalifaciens DSM
           30120]
 gi|212686358|gb|EEB45886.1| hypothetical protein PROVALCAL_02262 [Providencia alcalifaciens DSM
           30120]
          Length = 751

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 267/747 (35%), Positives = 441/747 (59%), Gaps = 23/747 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SEITHDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  +    VD+   ++   +EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELGHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A +AL++ P++++++++++I GPDFPT   I+ S E I + Y+ GRG
Sbjct: 182 TDIPPHNAREVASALVALLEKPKLNLDEIMQFIPGPDFPTEAEIISSPEDIRKVYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWEKEEGNA-----VITALPHQVSGAKILEQIANQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW+ 
Sbjct: 297 NPTRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILNEWII 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ +  R + R++ + RR+ IL GLLIAYLNIDE+I IIRNED+PK V++SRF++++ 
Sbjct: 357 YRRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRNEDEPKAVLMSRFNISDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ ++L S  +    I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELAKERDELQAILGSEARLNTLIKKEIQADAKAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A   +  + ++  EPITVV+S+ GW+RS K H ++ S L +K
Sbjct: 477 GD-----DRRSPLQEREEAKALSEHE-ILPSEPITVVLSDMGWVRSAKGHDIEPSNLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS K A    +    + L + G++Y++    L S R  GE +   + L     I    
Sbjct: 531 AGDSFKGAARGKSNQAAVFLDSTGRSYSIDPLELPSARSQGEPLTGKLTLPPGATIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
           +     K L+ S  G  FI   ++++   + GK  + +    K+   +++     D +  
Sbjct: 591 MAPEEQKYLMASDAGYGFICTFNDLVTKNKTGKALMSLPENAKVMAPIELNNEKEDLLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGR 717
           + +  ++L+F +  +P++S+GKG ++ +        G    V    I    +  +    R
Sbjct: 651 ITKAGRMLLFPVSDLPQLSKGKGNKIINITGAQAASGEDLLVWLMVIPPQASITLYFGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                  DL  +  +RG  G+ +P+G 
Sbjct: 711 KLKFKSEDLQKYRAERGRKGTSLPRGL 737


>gi|326624928|gb|EGE31273.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 760

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 267/755 (35%), Positives = 447/755 (59%), Gaps = 25/755 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               L+ +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+
Sbjct: 4   EDPLLMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLN 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSA 126
             A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S 
Sbjct: 64  ATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVG
Sbjct: 124 AAMRYTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+     I + Y  G
Sbjct: 184 MATDIPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPSAEIRKIYENG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG  R+RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES 
Sbjct: 244 RGSVRMRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESD 298

Query: 307 EDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW
Sbjct: 299 HENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEW 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           LA RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++
Sbjct: 359 LAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGIS 418

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   +
Sbjct: 419 ETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSD 478

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L+
Sbjct: 479 AYGD-----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           +K GDS K A+   +   ++ + T G++Y +    L S RG GE +   + L     +  
Sbjct: 533 YKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEH 592

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV- 663
             +     KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  + 
Sbjct: 593 MLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLL 652

Query: 664 -VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSA 715
            +    ++L+F +D +P++S+GKG ++ +         D G++ +        LT     
Sbjct: 653 AITLAGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVG 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R       +L   +G+RG  G+ + +G  R  + 
Sbjct: 712 KRKIKLRPEELQKVVGERGRRGT-LMRGLQRIDRI 745


>gi|298345810|ref|YP_003718497.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|304390486|ref|ZP_07372439.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|298235871|gb|ADI67003.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
 gi|304326242|gb|EFL93487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 847

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 235/768 (30%), Positives = 373/768 (48%), Gaps = 42/768 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V L   +++ Y+ YA+S I  RA+PD+RDG KPVHRR+I+ M + G      + K 
Sbjct: 30  RVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPNGGYSKC 89

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
            R+VG+V+G  HPHGD SVYD+L RL QP+  RYPL++GQGNFG+      AA RYTE +
Sbjct: 90  MRVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAPRYTECK 149

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ +DED VDF D Y+    EP V PS+ PNLL NG+ GIAVGMAT IP HN
Sbjct: 150 MATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVLPSRIPNLLINGSEGIAVGMATRIPPHN 209

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ +AA   + NPE + E+     L+ I GPDFPTG  I+  R  I E+YR GRG   
Sbjct: 210 LREVADAAQWYLQNPEATREELLAACLQRIKGPDFPTGATIL-GRRGIEETYRTGRGSIT 268

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
            RA   VEE+  G  C+V TE+PYQV    L  KIA+L+   ++  + DIRDE S     
Sbjct: 269 QRAVVNVEELN-GRTCLVATELPYQVNPDNLQVKIAQLVKDGQLQGIADIRDETSDRAGT 327

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++  + ++  FP NM  L    VP+ + +DG +  W+AH+ +
Sbjct: 328 RIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANMLALVD-GVPRTLSIDGFIHYWIAHQVD 386

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQ 427
           V+ RR++FR+     R+ IL+G L A   +DE+IA+IR     +   V         E Q
Sbjct: 387 VIKRRTAFRLAKAQERLHILQGYLAALDALDEVIALIRRSPTAEDARVGLMDFLKVDEVQ 446

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL L+LR L  LE  +I  E   L A+      +L   ++Q + ++ E+ E+ + + 
Sbjct: 447 ADAILALQLRRLAALERQKILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWG 506

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  R+TT             + +I +E + V I+  G+ +                
Sbjct: 507 DE-----RKTTIVPFDGEMS---MEDLIPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKG 558

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +     +E D ++      + D +L  +  G+ Y   A  +  G    +   +  L+   
Sbjct: 559 IKGASLREEDQVEHFFTTSSHDWLLFFTNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQ 618

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-----EK 649
            ++ I        +     L++ +  G       ++   N   G   +K+  +     ++
Sbjct: 619 PDERIAQVLQVSSFADKDYLVLATRLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQ 678

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           +         D + +V  + + L F+   +Q+  M R   GV    ++       +    
Sbjct: 679 LVSACLADATDDLILVSRHGQSLRFNACDEQLRPMGRATSGVTGMRFRADDELLTMDVVR 738

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            E   ++      Y +        +  RGG+G  V       G  + +
Sbjct: 739 PEADLFV-VTEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGA 785



 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 6/163 (3%)

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
             A  TD ++L+S  G++    A +      G   +    +    + +++T  V      
Sbjct: 683 CLADATDDLILVSRHGQSLRFNACDEQLRPMGRATSGVTGMRFRADDELLTMDVVRPEAD 742

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           L VV+  G A     SE     R G   K    V +   +   +    D  V V+    K
Sbjct: 743 LFVVTEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGALVTEEDSEVLVIMAGGK 802

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           ++   +D++    R  +GV      +G     I   +      
Sbjct: 803 IVRSRVDEVSRTGRNTQGVIFSRADEGDKVIAITLNVDNDPQL 845



 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 2/136 (1%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  ++ + F+  D L           + +++  G A              
Sbjct: 707 DEQLRPMGRATSGVTGMRFRADDELLTMDVVRPEADLFVVTEGGYAKRTALSEYRVQGRG 766

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G  I++   +    D+V A V +   ++LV+ + G        E+    R   G  F + 
Sbjct: 767 GLGIKVANLVEARGDLVGALVTEEDSEVLVIMAGGKIVRSRVDEVSRTGRNTQGVIFSRA 826

Query: 645 SSEEKMKLVVKVTGDH 660
              +K+  +     + 
Sbjct: 827 DEGDKVIAITLNVDND 842


>gi|119510770|ref|ZP_01629896.1| DNA gyrase subunit A [Nodularia spumigena CCY9414]
 gi|119464533|gb|EAW45444.1| DNA gyrase subunit A [Nodularia spumigena CCY9414]
          Length = 864

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 245/791 (30%), Positives = 380/791 (48%), Gaps = 69/791 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK
Sbjct: 1   MSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLMHDRPFRKCARVVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL-IL 144
            HPHGD +VYD+LVR+AQ F  R PLI+G GNFG++D D  AA RYTE R+  +  L +L
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQALTNLSLL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           Q ++ + VDF D ++    EP V PS+ P LL NG+SGIAVGMAT+IP HN+ E+ +  +
Sbjct: 121 QDIESETVDFIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLV 180

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV--- 261
           ALI NPEI+  +L++YI GPDFPTG  ++     I E+Y  GRG   +R    +E V   
Sbjct: 181 ALIHNPEITDLELMDYIHGPDFPTGAQVL-GTSGIREAYTTGRGSITMRGVATIETVQQR 239

Query: 262 -GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
             +    I++TE+PYQ  K+ LIEKIA+++  KR+  + DIRDES  D   ++    R  
Sbjct: 240 GRQDREAIIITELPYQTNKAALIEKIADMVNEKRLEGIADIRDESDRDGMRIVIELKRDS 299

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
            P +++ +++  + ++  F  NM  L     P+++ L   L+ +L  R E + RR+ + +
Sbjct: 300 YPRVVLNNLYKQTPLQANFGANMLALV-NGKPEILNLKKFLEVFLDFRIESITRRTRYEL 358

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLR 437
           +  + R  +L+GLLIA   +DEII +IR+           ++ + L+E Q DAIL ++LR
Sbjct: 359 RKAEARDHLLQGLLIALSQLDEIIVLIRHAPDAPTAKGELITNYGLSEVQADAILQMQLR 418

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  LE  +I+ E ++L  +   +  +L   ++    I  EI ++KE FS          
Sbjct: 419 RLTALEADKIRQEHEDLQTQIADLQDILARRERILEIIETEIAQLKESFSTPRRTVILPG 478

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 R   A  +  ++  E   +         +    +   +A   K+ D+++  L  
Sbjct: 479 EGEIDERDLIANEKAIILVTEQGYIKRMPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTC 538

Query: 558 HTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TC 612
              D IL  S  G  Y L A  +   S    G AI  ++ +   + I +    D      
Sbjct: 539 CDHDSILFFSDRGVVYCLKAYQIPVSSRTSRGTAIVQMLPIPREEKITSIVPVDEFSREE 598

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLL 671
            L++++  GN    E +        G   + +   ++++ V +    D + V       +
Sbjct: 599 YLVMLTKGGNIKKTELASFSNIRANGLIAISLEEGDQLRWVRRARVEDSILVGSRLGMAI 658

Query: 672 IFSI--DQIPEMSRG-KGVRLQSYKDGG------------------------ISDVICFK 704
            F    +Q+  +SR  +GVR    K G                           + +  +
Sbjct: 659 HFRCTHEQLRPLSRATRGVRAMKLKKGDELVGMDILPAAILDTLNTDEPETAEIEAVEIE 718

Query: 705 ICE--------------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
             E                          G   +      Y +        L  R G G 
Sbjct: 719 AVEIEAVEIEAVETENQEETAEVTSTGSIGPWVLVITMGGYGKRVPVAQFRLQNRAGQGL 778

Query: 739 LVPKGFPRSGK 749
           +  K   R GK
Sbjct: 779 MATKFKNRKGK 789



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKV-----SSEEKMKLVVKVTGDH--VAVVGE 666
           +LV++  G    V  ++     R G+  +         ++K+  +  V  DH  + +V +
Sbjct: 751 VLVITMGGYGKRVPVAQFRLQNRAGQGLMATKFKNRKGKDKLATLRIVNNDHDEIMMVTK 810

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
              ++  +++ I   SR   GVR+Q   +    + +  
Sbjct: 811 RGIIIRQAVNAISIQSRSATGVRVQRLDEEDAINGVAI 848


>gi|157373920|ref|YP_001472520.1| DNA topoisomerase IV subunit A [Shewanella sediminis HAW-EB3]
 gi|157316294|gb|ABV35392.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 757

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 264/757 (34%), Positives = 431/757 (56%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPLRRFTEAAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  + K++E++ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDVPPHNTRELVAACIELLDNPKADLAKIMEFVPGPDYPTEAEIITPSSDISKIYT 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + +E     +  +V+T +P+Q    +++E++A  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYKIE-----NGEVVITALPHQASGGKILEQVAAQMQAKKLPMVVDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM  +F  +D+E  F +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPVRIVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNILGLNGRPQVKGLKQILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R + + RR   R+  I  R+ IL+ L+ A+LNIDE+I IIR ED PK  ++SRF+
Sbjct: 356 EWLEYRFQTVTRRVQHRLDKILSRLHILEALMTAFLNIDEVIEIIRYEDNPKAELMSRFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q DAIL+L+LR L KLEE++IK E   L AE++K+  LL+S ++    I  E+ + 
Sbjct: 416 LTDIQADAILDLKLRHLAKLEEFKIKGEQSELEAERDKLQLLLSSDRRMKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   +   T Q+     E +TVV+S +GW+R  K H +D  A
Sbjct: 476 GETYGD-----DRRSPLVERGESKALTEQEL-APVEAVTVVLSEKGWVRCAKGHDIDAKA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+      L S R  GE I    +L+  + +
Sbjct: 530 LSYKSGDGFLCSAAGRSNQPSVFIGSTGRAFATETHTLPSARSQGEPITTRFNLSPGEVM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     L+ S  G  F+    ++++  + GK  L + +  K+ +   V     +
Sbjct: 590 EHVLLGDDDKFYLLASDAGYGFVGSYKDMVSRNKAGKALLSLPANAKVIVPQIVDKSKVE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++             +   +     +    + 
Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKSREELLSHLHVVPEDTAVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|227112793|ref|ZP_03826449.1| DNA topoisomerase IV subunit A [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 756

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 276/752 (36%), Positives = 453/752 (60%), Gaps = 23/752 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  ++++LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+ L++NP+ S+++LL+++ GPDFPT   I+  R+ + + Y+ GRG
Sbjct: 182 TDIPPHNVREVAAAAVMLLENPKASLDELLQHVQGPDFPTEAEIITPRDEVRKLYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E 
Sbjct: 357 FRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D+L  E++++ +LL S ++  N I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASDRKLSNLIKKEIQADAQAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A KA  +   +  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GDE-----RRSPLHERGEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAAKGKSNQPVVFIDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +      LL+ S  G  F+   ++++A  R GK  + +    K    +++ GD   +  +
Sbjct: 591 MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKAFAPIEIKGDDNLLMAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRS 718
               ++L+F +  +P++S+GKG ++ S      ++       +     +    +    R 
Sbjct: 651 TAAGRMLLFPVSDLPQLSKGKGNKIVSISSADFAEGKDRLTWLYLLPPQASVTLYFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                N+L  + G+RG  G+L+ +G  R  + 
Sbjct: 711 LVLRPNELQKYQGERGRKGTLL-RGLQRIDRI 741


>gi|315657694|ref|ZP_07910576.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492166|gb|EFU81775.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 847

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 235/768 (30%), Positives = 373/768 (48%), Gaps = 42/768 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V L   +++ Y+ YA+S I  RA+PD+RDG KPVHRR+I+ M + G      + K 
Sbjct: 30  RVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPNGGYSKC 89

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
            R+VG+V+G  HPHGD SVYD+L RL QP+  RYPL++GQGNFG+      AA RYTE +
Sbjct: 90  MRVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAPRYTECK 149

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ +DED VDF D Y+    EP V PS+ PNLL NG+ GIAVGMAT IP HN
Sbjct: 150 MATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVLPSRIPNLLINGSEGIAVGMATRIPPHN 209

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ +AA   + NPE + E+     L+ I GPDFPTG  I+  R  I E+YR GRG   
Sbjct: 210 LREVADAAQWYLQNPEATREELLAACLQRIKGPDFPTGATIL-GRRGIEETYRTGRGSIT 268

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
            RA   VEE+  G  C+V TE+PYQV    L  KIA+L+   ++  + DIRDE S     
Sbjct: 269 QRAVVNVEELN-GRTCLVATELPYQVNPDNLQVKIAQLVKDGQLQGIADIRDETSDRAGT 327

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++  + ++  FP NM  L    VP+ + +DG +  W+AH+ +
Sbjct: 328 RIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANMLALVD-GVPRTLSIDGFIHYWIAHQVD 386

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQ 427
           V+ RR++FR+     R+ IL+G L A   +DE+IA+IR     +   V         E Q
Sbjct: 387 VIKRRTAFRLAKAQERLHILQGYLAALDALDEVIALIRRSPTAEDARVGLMDFLKVDEVQ 446

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL L+LR L  LE  +I  E   L A+      +L   ++Q + ++ E+ E+ + + 
Sbjct: 447 ADAILALQLRRLAALERQKILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWG 506

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  R+TT             + +I +E + V I+  G+ +                
Sbjct: 507 DE-----RKTTIVPFDGEMS---MEDLIPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKG 558

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +     +E D ++      + D +L  +  G+ Y   A  +  G    +   +  L+   
Sbjct: 559 IKGASLREEDQVEHFFTTSSHDWLLFFTNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQ 618

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-----EK 649
            ++ I        +     L++ +  G       ++   N   G   +K+  +     ++
Sbjct: 619 PDERIAQVLQVSSFTDKDYLVLATRLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQ 678

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           +         D + +V  + + L F+   +Q+  M R   GV    ++       +    
Sbjct: 679 LVSACLADATDDLILVSRHGQSLRFNACDEQLRPMGRATSGVTGMRFRADDELLTMDVVR 738

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            E   ++      Y +        +  RGG+G  V       G  + +
Sbjct: 739 PEADLFV-VTEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGA 785



 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 6/163 (3%)

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
             A  TD ++L+S  G++    A +      G   +    +    + +++T  V      
Sbjct: 683 CLADATDDLILVSRHGQSLRFNACDEQLRPMGRATSGVTGMRFRADDELLTMDVVRPEAD 742

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           L VV+  G A     SE     R G   K    V +   +   +    D  V V+    K
Sbjct: 743 LFVVTEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGALVTEEDSEVLVIMAGGK 802

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           ++   +D++    R  +GV      +G     I   +      
Sbjct: 803 IVRSRVDEVSRTGRNTQGVIFSRADEGDKVIAITLNVDNDPQL 845



 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 2/136 (1%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  ++ + F+  D L           + +++  G A              
Sbjct: 707 DEQLRPMGRATSGVTGMRFRADDELLTMDVVRPEADLFVVTEGGYAKRTALSEYRVQGRG 766

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G  I++   +    D+V A V +   ++LV+ + G        E+    R   G  F + 
Sbjct: 767 GLGIKVANLVEARGDLVGALVTEEDSEVLVIMAGGKIVRSRVDEVSRTGRNTQGVIFSRA 826

Query: 645 SSEEKMKLVVKVTGDH 660
              +K+  +     + 
Sbjct: 827 DEGDKVIAITLNVDND 842


>gi|254412126|ref|ZP_05025901.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420]
 gi|196181092|gb|EDX76081.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420]
          Length = 838

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 238/778 (30%), Positives = 378/778 (48%), Gaps = 70/778 (8%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK HPHGD +V
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVDEDAVD 153
           YD+LVR+AQ F  R PLI+G GNFG++D D  AA RYTE R+  +A + +L+ ++ + VD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQSLATDSLLRDIESETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F D ++    EP+V P++ P +L NG+SGIAVGMAT+IP HN+ E+ +  +ALI NPEI+
Sbjct: 121 FLDNFDGSQQEPIVLPARVPQILLNGSSGIAVGMATNIPPHNLGELVDGLVALIHNPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR----GSWCIV 269
            ++L++YI  PDFPTGG I+  R  I ++Y  GRG   +R    VE +          I+
Sbjct: 181 EKELMQYIPAPDFPTGGQIL-GRSGIKDAYTTGRGSITMRGVAQVETIEHRGRPDKEAII 239

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PYQ  K+ LIEKIAE++  KRI  + DIRDES      V+    R   P +++ ++
Sbjct: 240 VTELPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRRGMRVVIELKRDAYPRVVLNNL 299

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + +++ F  NM  L  G  PQ++ +   L+ +L  R E + RR+ + ++  + R  +
Sbjct: 300 YKQTPLQSNFGANMLALV-GNEPQLLTIKQFLEVFLEFRIETITRRTQYELRKAEERDHL 358

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GLLIA  N+D +IA+IR  +           +F L+E Q DAIL ++LR L  LE  +
Sbjct: 359 LQGLLIALDNLDAVIAVIRAANDTATAKSQLIEQFGLSEPQADAILQMQLRRLTALEAQK 418

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I++E + L      +  +L +  +    I  E  ++K           RRT   EV    
Sbjct: 419 IQAEHEELQVRIADLQDILANRSRILEIIETEALQIKTTHDTP-----RRTAIQEVEGE- 472

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAH 558
                  +I  E   ++++ +G+I+ +  HS           +A   KE D ++  L   
Sbjct: 473 --LDDIDLIANEKAVILVTEQGYIKRMPIHSFAAQARATRGKAAARMKEDDGVEHFLTCC 530

Query: 559 TTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCK 613
             D +L  S  G  Y+L A  +   S    G  I  ++ + H++ I +      +     
Sbjct: 531 DHDSLLFFSDRGVVYSLRAYQIPAASRTARGVPIVQMLPIPHDEKITSVVPVSEFTDDVY 590

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLI 672
           L++++ KG                G   + +   ++++ V      D + +       + 
Sbjct: 591 LVMLTRKGYIKKTALDAFSNIRANGLIAISLGEGDQLRWVRLCRAEDSIIIGSSQGMAIH 650

Query: 673 FSI--DQIPEMSRG-KGVRLQSYKDGGISDVICFKIC----------------------- 706
           F    DQ+  + R  +GV+    +       +                            
Sbjct: 651 FKADHDQLRPLGRATRGVKAMKLRSKDELISMDILPAQVVERLIATANSEEVETEDDTSD 710

Query: 707 ------------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +G   +        +        L  R G+G +  K   +  K  +
Sbjct: 711 EVNGEEVHETAGQGPWVLVVTTGGLGKRVPVSQFRLQNRAGMGLVTIKFRHKKDKLAA 768



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENRK 669
           +LVV++ G    V  S+     R G   + +     ++K+  +  V  GD + +V     
Sbjct: 727 VLVVTTGGLGKRVPVSQFRLQNRAGMGLVTIKFRHKKDKLAALRVVNEGDELMMVTMRGI 786

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           ++  ++D I   SR   G+R+Q   +      +      G 
Sbjct: 787 IIRQALDAISPQSRMATGIRVQRLDEEDAIAAVALVPLSGS 827



 Score = 44.4 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 43/125 (34%), Gaps = 2/125 (1%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
            S  V+       E +  ++   A     +L+++T G    +P          G  +  +
Sbjct: 698 NSEEVETEDDTSDEVNGEEVHETAGQGPWVLVVTTGGLGKRVPVSQFRLQNRAGMGLVTI 757

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK 651
              +    +    V +   +L++V+ +G         I   +R   G    ++  E+ + 
Sbjct: 758 KFRHKKDKLAALRVVNEGDELMMVTMRGIIIRQALDAISPQSRMATGIRVQRLDEEDAIA 817

Query: 652 LVVKV 656
            V  V
Sbjct: 818 AVALV 822


>gi|161506259|ref|YP_001573371.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867606|gb|ABX24229.1| hypothetical protein SARI_04454 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 752

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 267/749 (35%), Positives = 445/749 (59%), Gaps = 23/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSEMAERLALHEFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++E+LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLEQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF +TE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGITETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++  + +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNSLLRKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     I    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATIEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +  ++  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDENDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSY------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
            ++L+F +D +P++S+GKG ++ +       K       +     +    I    R    
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIVNIPSAEAAKGDDSLAHLYVLPPQSTLIIHVGKRKIKL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +L   +G+RG  G+ + +G  R  + 
Sbjct: 710 RPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|200388568|ref|ZP_03215180.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199605666|gb|EDZ04211.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 752

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVCRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIKDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|237729948|ref|ZP_04560429.1| DNA topoisomerase IV subunit A [Citrobacter sp. 30_2]
 gi|226908554|gb|EEH94472.1| DNA topoisomerase IV subunit A [Citrobacter sp. 30_2]
          Length = 752

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 264/750 (35%), Positives = 447/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAEVLLGELGQGTSDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPELMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++ ++L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELAKERDQLQAILASERKMSNLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKSAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +    ++   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENARVMQPVVIEDETDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAAKGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R    
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDSI 737


>gi|329850840|ref|ZP_08265685.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19]
 gi|328841155|gb|EGF90726.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19]
          Length = 935

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 247/843 (29%), Positives = 381/843 (45%), Gaps = 115/843 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +S+   L+  YL YA+S I  RA+PD RDG KPVHRRII+AM E G      + K
Sbjct: 29  QGIAYISIEAELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIIYAMHEEGRTSDKKYVK 88

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVG+V+G+ HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD  AA RYTE+
Sbjct: 89  SANIVGDVMGRYHPHGDSAIYDALVRMAQPFSMSLLLVDGQGNFGSVDGDPPAAMRYTES 148

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ AE ++  +++  +DF D Y+    EP V PS+ PNLL NG  GIAVGMAT+IP H
Sbjct: 149 RMTKAAEALVADIEKQTIDFTDNYDGSRREPSVLPSRIPNLLVNGAGGIAVGMATNIPPH 208

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +A LA++D+P +S+E LL  + GPD+PTGG I+  R     +   GRG    R 
Sbjct: 209 NLGEIVDACLAVLDDPSVSMEDLLSIVPGPDYPTGGEIL-GRSGARLALMTGRGSVVTRG 267

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E + +    IV+TEIPYQV KS +IE IAEL+  KRI  + D+RDES      V+ 
Sbjct: 268 KASIETIRKDREAIVITEIPYQVNKSSMIEHIAELVRDKRIEGISDVRDESDRQGMRVVV 327

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    D+++  ++  + ++T F +NM  L     PQ M L  +L  +L  R +V+ R
Sbjct: 328 ELKRDASGDVILNQLYRFTSLQTSFGVNMLALDH-GRPQQMGLRRLLDIFLDFREDVVVR 386

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------------ 422
           R  F +     R  +L G+ IA  NIDE+I IIR+   P        +            
Sbjct: 387 RIRFELNKARDRGHVLVGMTIAVANIDEVIHIIRSSADPSEARERLCAKTWPSGDMAPLI 446

Query: 423 -----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            LT+ Q  AIL L L  L  L   +I  E   L +       +L
Sbjct: 447 DLIADPRSIVLEGAQVRLTDEQARAILALTLSRLTGLGRDEIGDEARALSSAIAGYLEIL 506

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S ++    +  E+ EVK  F+       RRT   E   ++     + +I +E + V ++
Sbjct: 507 SSRERIMAIVREELVEVKAQFAVP-----RRTQIAE---SEGDIEDEDLIPREDMVVTVT 558

Query: 526 NRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + G+++                 S +  K+ D++     A T   +L  S+ GKA+ L  
Sbjct: 559 HSGYVKRTPLSMYREQHRGGKGRSGMAMKDEDAIIGVYTASTHQPMLFFSSTGKAFKLKV 618

Query: 578 GNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
             L   + +  G+A   L+ +    +I                 ++  +  G+    + S
Sbjct: 619 WRLPVGNPQSKGKAFVNLLPIEPGDNISNILALPEEEAGWDKLDIIFATRSGDIRRNKLS 678

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSR-GKG 686
           + +   R GK  +K+   + +  V   + D  V +     + + F++D++     R   G
Sbjct: 679 DFVNVNRAGKIAMKLEEGDAIVGVAVCSDDQDVLLSTSGGRAIRFAVDEVRVFKGRDSTG 738

Query: 687 VRLQSY--------------------------------------KDGGISDVICFKICEG 708
           VR                                               +  +     E 
Sbjct: 739 VRGVRLLGDDKVISMAILKRSDAIAAERAAYLKRASAERTALIGSADDEAPAVVEDDSEE 798

Query: 709 LT-------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
            +                    +  +   + +  +        RGG G +      R GK
Sbjct: 799 TSDIAELTDERYAELKNQEEFILTISDVGFGKRSSSFEFRRTGRGGQGIVAMDMSKRGGK 858

Query: 750 FLS 752
             +
Sbjct: 859 LAA 861



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 53/232 (22%), Gaps = 63/232 (27%)

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE---I 631
           +    L        A ++ + L     IV   V      +L+ +S G A      E    
Sbjct: 672 IRRNKLSDFVNVNRAGKIAMKLEEGDAIVGVAVCSDDQDVLLSTSGGRAIRFAVDEVRVF 731

Query: 632 IANTRKGKTFLKVSSEEKMKL------------------------------------VVK 655
                 G   +++  ++K+                                         
Sbjct: 732 KGRDSTGVRGVRLLGDDKVISMAILKRSDAIAAERAAYLKRASAERTALIGSADDEAPAV 791

Query: 656 VTGD-----HVAVVGENRKL-------LIFSIDQI-----------PEMSRG-KGVRLQS 691
           V  D      +A + + R          I +I  +               RG +G+    
Sbjct: 792 VEDDSEETSDIAELTDERYAELKNQEEFILTISDVGFGKRSSSFEFRRTGRGGQGIVAMD 851

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
               G     CF I      +           +     +  R   G  + + 
Sbjct: 852 MSKRGGKLAACFPIEATDGILLVTQGGQLIRTSVRQVRIAGRNTQGVTIFRT 903


>gi|198242763|ref|YP_002217152.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937279|gb|ACH74612.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 752

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 447/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  +   
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITLA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|154249480|ref|YP_001410305.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1]
 gi|154153416|gb|ABS60648.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 823

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 233/763 (30%), Positives = 407/763 (53%), Gaps = 25/763 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +   +  + NV    L   L + YL+Y++S I  RAIPD+RDG KPV RRII++M E+GL
Sbjct: 11  NEIKSNEQNNVFERVLEDELVKSYLSYSMSVIIGRAIPDVRDGLKPVQRRIIYSMYELGL 70

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                FKK+ARIVGEV+GK HPHGD S+Y++LVR+AQP++ RY L+ GQGNFG+ID D  
Sbjct: 71  FHNKPFKKTARIVGEVMGKYHPHGDSSIYEALVRMAQPWLMRYSLVEGQGNFGSIDRDPP 130

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+ ++AE +++ +D+  V   D ++    EP V P+K PNLL NG SGIAVG
Sbjct: 131 AAMRYTEARLHKIAEEMVEDIDKQTVKMLDNFDGSLQEPDVLPAKVPNLLLNGASGIAVG 190

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP+HN+ ++ +A +A I N +IS+E+L++ I GPDFPTGGII+  +  I E Y  G
Sbjct: 191 MATNIPTHNLNDVVDATIAYIKNRDISVEELIDIIKGPDFPTGGIIIG-KSGIREMYITG 249

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +GGF +R +  ++   +    I++TEIPY + K+ LI++IA+ +  + IP ++D+RDES 
Sbjct: 250 KGGFTIRGKAEIKHEKKK-KSIIITEIPYGISKAELIKQIADYLQEEEIP-VKDLRDESD 307

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   V+      +  ++++ +++  ++++TRF  N  V+   + P++M L  +++ ++ 
Sbjct: 308 KDGLRVVIEFPEDVKEEVILNNLYQKTNLQTRFNANFLVIDGDKQPRLMNLKQLIEAYVK 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSL 423
           HR EV+ +R+ +  Q   +R  I++GL+ A   ID +++IIR+          +V    +
Sbjct: 368 HRFEVVRKRTQYAYQQDSKRAHIVEGLIKASKAIDTVVSIIRSSKDSSEALSQLVDILQM 427

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  A+L++RL  L  LE   ++ E  +LL   EK   LL +  + +  I  E+ E+K
Sbjct: 428 SEEQAKAVLDMRLGRLTNLETQNLQQEYRDLLVRLEKEKELLMNDDKVYEVIIEELEEIK 487

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535
           + +        R+T   ++        ++ +I  + I + ++ +G+         R+ + 
Sbjct: 488 KKYGDP-----RKTEITDLEETATKFDKKDLIPNKDIVITLTKKGFLKLMDIDAFRTQRR 542

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLL 593
           +   +   +  E D +   +++    + L  ++ GK Y +   +    +    G+ I   
Sbjct: 543 NGKGVIGANLMEDDIISQIIYSKLHSKTLFFTSLGKVYEIENLDIEESNRGTKGKPINKY 602

Query: 594 IDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           I L + + ++    + D   +L  V+ KG        +    T KG   +     +++  
Sbjct: 603 IKLENGERVLAMVDITDYVGELFFVTKKGVVKRTSLEDFKNITSKGIRAITFKDGDELVS 662

Query: 653 VVKVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           V+++  +   V +  +    + F I+++  M R   GVR    ++G           +  
Sbjct: 663 VLRINSESNTVLISTKLGMSIRFGIEEVRTMGRNAAGVRGIRLREGDEVISSTVLENDNG 722

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +           R G+G        ++G  + 
Sbjct: 723 YILTITENGYGKLTEVSDYRKQSRDGLGIKNIGEIEKTGPIVG 765



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 56/147 (38%), Gaps = 5/147 (3%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G +       + +   +   ++ +     ++ I +  + +    +L ++  G   + 
Sbjct: 677 TKLGMSIRFGIEEVRTMGRNAAGVRGIRLREGDEVISSTVLENDNGYILTITENGYGKLT 736

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMS 682
           E S+    +R G     +   EK   +  V  V GD  + +  ++   + F +  IP  S
Sbjct: 737 EVSDYRKQSRDGLGIKNIGEIEKTGPIVGVAYVNGDEEIVLFTKDGASIKFKVSDIPTRS 796

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R  +GV++ +  DG I         E 
Sbjct: 797 RTAQGVKVMNLADGDIVADFAVIGGEE 823


>gi|238750917|ref|ZP_04612414.1| DNA topoisomerase 4 subunit A [Yersinia rohdei ATCC 43380]
 gi|238710831|gb|EEQ03052.1| DNA topoisomerase 4 subunit A [Yersinia rohdei ATCC 43380]
          Length = 757

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 279/756 (36%), Positives = 445/756 (58%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ A+++L  + +  VD+   ++    EP   P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYADVLLGELGQGTVDWTPNFDGTMQEPKTLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+EI +A +ALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+
Sbjct: 178 VGMATDIPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 NGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+
Sbjct: 353 EWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFA 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    +  EI+  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLLKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RR+   E + A KA     ++  EP+T+V+S  GW+RS K H +D + 
Sbjct: 473 AAAYGD-----DRRSPLKERAEA-KAMSDHDIVPSEPVTIVLSEMGWVRSAKGHDIDPTG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LNYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660
               +     KLL+ S  G  F+   +++IA  R GKT + +    K    +++    D 
Sbjct: 587 EQVLMAPEHQKLLMASDAGYGFVCTFNDLIAKNRAGKTMITLPENAKALPPLEIYGPDDM 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKICEGLTW-IDS 714
           +  +    ++L+F +  +PE+S+GKG ++ S        G    V  F +    +  +  
Sbjct: 647 LLSITAAGRMLMFPVADLPELSKGKGNKIVSIPAPDAAAGKDRLVWLFVLPPQTSITLHF 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  GS +P+G  R  + 
Sbjct: 707 GKRKLTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|145597764|ref|YP_001161840.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides F]
 gi|145209460|gb|ABP38867.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides F]
          Length = 757

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 283/756 (37%), Positives = 445/756 (58%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+EI +A LALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+
Sbjct: 178 VGMATDIPPHNVREIAQAVLALIDKPTTSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 NGRGSVRMRAVWKKEDGSA-----VITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRTNRVDLDQVMSHLFATTDLERSYRINMNMIGLDNRPSVKGLLEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ +  R +FR++ + +R+ IL+GLLIA+LNIDE+I IIR ED PKP+++ RFS
Sbjct: 353 EWLVFRRQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDDPKPLLMQRFS 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +  S 
Sbjct: 473 AAAYGD-----DRRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIAPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660
               +   + KLL+ S  G  F+   ++++A  R GKT + +    K+   +++    D 
Sbjct: 587 EHVLMAPDSQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDM 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKICEGLTW-IDS 714
           +  +    ++L+F +  +PE+S+GKG ++ S        G       F +    +  +  
Sbjct: 647 LLSITAVGRMLMFPVADLPELSKGKGNKIVSIPAAQAAAGEDRLAWLFVLPPQTSITLHF 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  GS +P+G  R  + 
Sbjct: 707 GKRKLTLRPEDLQKFRAERGRKGSPLPRGLQRIDRI 742


>gi|114327883|ref|YP_745040.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1]
 gi|114316057|gb|ABI62117.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1]
          Length = 940

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 245/835 (29%), Positives = 375/835 (44%), Gaps = 102/835 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V+L   +   YL YA+S I  RA+PD RDG KPVHRRI++ M E G      ++KSARI
Sbjct: 24  PVTLEEEMSRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMQESGYTADKPYRKSARI 83

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G+V+GK HPHGD ++YD+LVRLAQPF  R PLI GQGNFG++DGD AAA RYTEAR+ +
Sbjct: 84  NGDVMGKYHPHGDAAIYDALVRLAQPFSLRVPLIDGQGNFGSMDGDPAAAPRYTEARLAR 143

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D D VDF+  Y++ + EP V P+ +PNLL NG  GIAVGMAT IP+HN  E
Sbjct: 144 SASFLLNDIDRDTVDFQPNYDDSEMEPRVLPASYPNLLVNGADGIAVGMATKIPTHNPTE 203

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+IDNP+I++++L+  I GPDFPTGG ++  R  I  ++  G+G   VRAR   
Sbjct: 204 VIDATLAMIDNPDITLDELMTVIPGPDFPTGG-LILGRSGIRSAFETGKGSITVRARTDF 262

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EEV  G   IV++EIPYQV K+ L E++AEL+ AK+I  + DIRDES      V+    R
Sbjct: 263 EEVRGGRQAIVISEIPYQVNKATLQERMAELVRAKQIEGISDIRDESDRSGVRVVIELKR 322

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              PD+++  +F  + ++  + +NM  L  G  P++M L  +L  ++  R +V+ RR+ F
Sbjct: 323 DATPDVVLNHLFRFTQLQISYGINMLALD-GGQPRLMGLRDVLSTFIRFREDVILRRARF 381

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------------- 415
            +     R  +L GL IA  NIDE+I +IR                              
Sbjct: 382 ELNKARDRAHLLVGLAIAVANIDEVIRLIRQSPDSTSARIALMERDWPAADVAPLLTLID 441

Query: 416 ------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                        LTE Q   IL LRL+ L  LE  +I +E+  + A   ++  ++ S  
Sbjct: 442 DGGNVLTEAQTVRLTEVQARGILELRLQRLTGLERDKIHNEMQEVAARIGELLEIIGSHI 501

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           ++   +  E+  ++   +         +   +   +     Q  +       +  +    
Sbjct: 502 RRMEVMREELAVIRAELNSPRRSEINDSLADQDDESLIEPGQMVVTITRDGFIKRTPLDV 561

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE- 588
            R         +A   +  D +  + +AHT   +L  S+ GKAY      L       + 
Sbjct: 562 FRQQHRGGRGRAAASMRGDDIVTRSFNAHTHQWVLFFSSGGKAYRQKVWRLPEAGPTAKG 621

Query: 589 -AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            A+  L+    +  I                 L+  ++ G       S+       G   
Sbjct: 622 RALVNLLPELGSDGITAVLPLPQDESLWEGLHLVFATASGGIRRNRLSDFKNVRASGLIA 681

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEM-SR-GKGVRLQSYKDGG 696
           +K+   +++  V     GD + +     + + F  + D +     R   GVR      G 
Sbjct: 682 MKLDEGDRLIGVATCREGDDIMLASRLGRCIRFQANEDTLRVFAGRESSGVRGMKLAQGD 741

Query: 697 IS-------------------------------------DVICFKICEGLTWIDSA---- 715
                                                  D    +  +    +D      
Sbjct: 742 EVISLSVLRHVEATPEERAAYLRYASARRRSAAGEEDQIDAEVMEADDSEVTVDDTALSP 801

Query: 716 GR-----------------SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            R                  + +  +     +  RGG G       PR+G+ +++
Sbjct: 802 ERIAGLEEAEEFLLTVTIAGFGKRSSAYDYRVSGRGGQGIANINLAPRNGRAVAA 856



 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-----GDHVAV 663
           ++   LL V+  G        +   + R G+    ++   +    V  T     GD V +
Sbjct: 809 EAEEFLLTVTIAGFGKRSSAYDYRVSGRGGQGIANINLAPRNGRAVAATFPVRPGDDVML 868

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
           V +  +L+    DQ+    R   GV L       +   + F + E  + 
Sbjct: 869 VTDAGRLIRVPADQVRITGRSTMGVTLFRVDKDEVVTSV-FPVLETESV 916



 Score = 44.4 bits (103), Expect = 0.084,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 31/114 (27%), Gaps = 9/114 (7%)

Query: 647 EEKMKLVVKVTG-----DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD-GGISD 699
           ++      ++ G     + +  V         S        RG +G+   +     G + 
Sbjct: 795 DDTALSPERIAGLEEAEEFLLTVTIAGFGKRSSAYDYRVSGRGGQGIANINLAPRNGRAV 854

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              F +  G   +                 +  R  +G  + +      + ++S
Sbjct: 855 AATFPVRPGDDVMLVTDAGRLIRVPADQVRITGRSTMGVTLFRVDK--DEVVTS 906


>gi|253686737|ref|YP_003015927.1| DNA topoisomerase IV, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753315|gb|ACT11391.1| DNA topoisomerase IV, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 756

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 277/752 (36%), Positives = 453/752 (60%), Gaps = 23/752 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  ++++LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEILLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+ L++NP+ S++ LL+++ GPDFPT   I+  R+ + + Y+ GRG
Sbjct: 182 TDIPPHNVREVAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E 
Sbjct: 357 FRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D+L  E++++ +LL S ++  N I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASDRKLSNLIKKEIQADAQTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E S A KA  +   +  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLYERSEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAAKGKSNQPVVFIDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +      LL+ S  G  F+   ++++A  R GK  + +    K    +++ GD   +  +
Sbjct: 591 MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALAPMEIHGDDNLLMAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRS 718
               ++L+F +  +P++S+GKG ++ S      ++       +     +    +    R 
Sbjct: 651 TAAGRMLLFPVSDLPQLSKGKGNKIVSISSADFAEGKDRLTWLYLLPPQASVTLYFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                N+L  + G+RG  G+L+ +G  R  + 
Sbjct: 711 LVLRPNELQKYQGERGRKGTLL-RGLQRIDRI 741


>gi|57238973|ref|YP_180109.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|58578910|ref|YP_197122.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|57161052|emb|CAH57959.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|58417536|emb|CAI26740.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
          Length = 898

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 246/840 (29%), Positives = 394/840 (46%), Gaps = 99/840 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN N     NV  VS+   LE+ YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G
Sbjct: 1   MSNLN-----NVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSG 55

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KK+AR+VG+V+GK HPH D ++YDSLVR+AQ F    PLI  QGNFG+IDGD 
Sbjct: 56  YDYSKPYKKAARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDP 115

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            A+ RYTEAR+ + A  +L  +DED VDFR  Y+  +SEPVV P++FPN+L NG  G+AV
Sbjct: 116 PASMRYTEARLARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAV 175

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM+T+IPSHN+ E+ +A +A IDNP+I+ ++L++ + GPDFPTGG I+     I  ++  
Sbjct: 176 GMSTNIPSHNLGEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTIL-GDAGIRSAFMT 234

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   V+ +  VE++  G   I++ EIPYQV K++LIE+I EL+  KRI  + D+RDES
Sbjct: 235 GKGTIIVQGKTHVEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    V     + +   +++  I  L+ + T F +N  VL     P+VM L  I+  ++
Sbjct: 295 NKMGIRVAIELKKQVSHQVVLNQILGLTPLRTSFSINTLVLD-NNKPKVMSLLDIISTFI 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-------- 417
            +R+EVL RR+ FR++ +  +  +  G+ IA LNID++I+IIR+                
Sbjct: 354 EYRKEVLTRRTQFRLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKW 413

Query: 418 ---------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                     LT  QV +IL ++L+ L  LE+ +++ +L ++++
Sbjct: 414 SALASVKEMIELVADSKSIVVNDVCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVS 473

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             ++   LL + +     +   + E+K   +         + F              +  
Sbjct: 474 MIKQYTELLGNKESLLKLVKNGLEEIKAKLAVPRKTTIDYSHFETDVEDLIPKEDMVVTV 533

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +        R+ +           +E D +      +T   +L  S  G+ Y L 
Sbjct: 534 TMSGYIKRVKLSNYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLK 593

Query: 577 AGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEE 628
              L        G ++  +  L+ N+ I +               +L  ++ GN      
Sbjct: 594 VYKLPLGDPTSRGRSLVNIFPLSENEVITSVMPLPENQEDTEQLNILFATASGNLRRNAL 653

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE-MSR-GK 685
           S+       GK  + +   + +  V   T  +HV +  +  K + F++  I +   R   
Sbjct: 654 SDFQYVPSNGKIAMVLDEGDTLISVKVCTAENHVLISTKLGKSIRFAVSNIRQFKGRISD 713

Query: 686 GVRLQSY-------------------------------------KDGGIS---------- 698
           GVR                                         K+ G+           
Sbjct: 714 GVRAIRLSSEEDQVISMSVLIAMEVDSETKDLYLKVPLEKRLLVKEDGVINQGVANMLVD 773

Query: 699 -----DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                DV    +      +      + +  +        RGGVG +      R+G  +SS
Sbjct: 774 LGLSQDVFMSMVQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRNGNVISS 833



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 7/116 (6%)

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTG 658
           V   +  +   +L V+  G        E     R G   + +     +   +      + 
Sbjct: 780 VFMSMVQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRNGNVISSFSVESN 839

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTW 711
           DH+ ++    KL+  +++ I  + R  +GV L      +  +S        +    
Sbjct: 840 DHIMLITNKGKLIRIAVNDIRIVGRSTQGVTLFKTDKQEKVVSVAKVIDHKDESDI 895


>gi|103486652|ref|YP_616213.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256]
 gi|98976729|gb|ABF52880.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256]
          Length = 901

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 240/821 (29%), Positives = 370/821 (45%), Gaps = 81/821 (9%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E+ V  +++   ++  YL YA+S I  RA+PD+RDG KPVHRRI++A  E G   G  
Sbjct: 3   PSEDGVSPINIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAAQEGGFIPGRP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSA+IVG+V+G  HPHGD ++YD+L R+ Q +  R PLI GQGNFG++D D  A+ RY
Sbjct: 63  YKKSAKIVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ + A ++L  +D+D VDF+  Y+    EP V P++FPNLL NG  GIAVGMAT+I
Sbjct: 123 TEARLAKTAMVLLNDLDKDTVDFQPNYDASREEPTVLPARFPNLLVNGAGGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +A LA+IDNP I++E+L+  + GPDFPTG +++  +     +Y  GRG   
Sbjct: 183 PPHNLGEIIDATLAMIDNPAITLEELMAIVPGPDFPTGAMML-GQGGARSAYATGRGSIM 241

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+   +EE       IV+T IP+QV KS L+EKIAE    KRI  + DIRDES  +   
Sbjct: 242 MRSTHVIEEGRNDRQSIVLTSIPFQVGKSGLVEKIAEAARDKRIEGVADIRDESNREGVR 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R    ++++  ++  +  ++ FP    +   G  P++M L  IL  ++  R EV
Sbjct: 302 VVIELKRDATAEVVLNQLWRHTPAQSSFPA-NMLAIRGGRPEMMGLKDILSAFIIFREEV 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------- 420
           + RR  F +     R  IL GL++A  N+DE++ IIR    P     +            
Sbjct: 361 ITRRCKFELAKARDRAHILLGLVVAVSNLDEVVRIIRGSSSPAAAREALLAREWPIGDIA 420

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L+E QV AIL+LRL  L  L   +I  EL  L AE E++ 
Sbjct: 421 PYIRLVEAIEGEMEEAATYRLSEVQVKAILDLRLHRLTALGRDEIGKELGELAAEIEELL 480

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           S+L    + +  +  E+  V++ F+                       +  +       +
Sbjct: 481 SILADRVKLYGVMREELVAVRDEFATPRRTLLAPAADGIDDEDLIEREEMVVTVTMDGYI 540

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
             +     R+ +      + +  K+ D +       T   +L  ST GK Y +    L  
Sbjct: 541 KRTPLATFRAQRRGGKGRAGMATKDEDVVTELFVTSTHTPVLFFSTAGKVYRMKVWRLPE 600

Query: 583 --GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIAN 634
                 G  +  L+ L   + I T               ++  ++KG+            
Sbjct: 601 GGPATRGRPMINLLPLAQGETISTVLPLPEDESEWGKLHVMFATAKGSVRRNSMDAFTNV 660

Query: 635 TRKGKTFLKV---SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSR-GKGVR 688
              GK  +K      ++++  V  +   D V +     K + F+ D + E  SR   GVR
Sbjct: 661 PSNGKIAMKFEGDDEDDRLIGVALLDESDDVLLATRQGKAIRFAGDDVREFQSRNSTGVR 720

Query: 689 LQSYKDGGISDVICF------------------------------------KICEGLTWI 712
                +G     +                                              +
Sbjct: 721 GMRLAEGDEVISLSILHRVGTTGDEREAYLRAAPWKDNENEPTLPAERMAELAAREQFIL 780

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 Y +  +        RGG G        R+G  ++S
Sbjct: 781 TVCANGYGKLSSAYEYRRTGRGGQGITNIDNIARNGPVVAS 821



 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 50/192 (26%), Gaps = 10/192 (5%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           +    ++ + +G         V         G              + +L   G      
Sbjct: 687 ESDDVLLATRQGKAIRFAGDDVREFQSRNSTGVRGMRLAEGDEVISLSILHRVGTTGDER 746

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
              L +        +  +      ++           +L V + G   +    E     R
Sbjct: 747 EAYLRAAPWKDNENEPTLPAERMAELAA-----REQFILTVCANGYGKLSSAYEYRRTGR 801

Query: 637 KGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS 691
            G+    + +       +          + +V +  KL+   +D +  + RG  GVRL  
Sbjct: 802 GGQGITNIDNIARNGPVVASFPATQAHQLMLVTDQAKLIRMGLDSLRIIGRGSAGVRLFD 861

Query: 692 YKDGGISDVICF 703
             +G        
Sbjct: 862 VAEGEHVVSAAL 873


>gi|90407395|ref|ZP_01215580.1| DNA topoisomerase IV subunit A [Psychromonas sp. CNPT3]
 gi|90311546|gb|EAS39646.1| DNA topoisomerase IV subunit A [Psychromonas sp. CNPT3]
          Length = 756

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 275/757 (36%), Positives = 444/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  + ++ + L    EE YL Y++  I +RA+P + DG KPV RRII AMSE+G
Sbjct: 1   MSDKQNLSLQGIEQLPLAKFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   
Sbjct: 61  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ +EL+L  + +   D++  ++    EP + P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTESRLSKFSELLLSEIAQGTTDWKPNFDGTLQEPELLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+ EA L +ID+P+ ++  +LE++ GPD+PT   I+  R  I   Y 
Sbjct: 181 VGMATDVPPHNLREVAEACLHIIDHPKATLSDILEFVQGPDYPTEAEIITPRHEIKRIYT 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG F+ RA + +EE       IV++ +P++V   ++++ IA+ +I K++P++ D+RDE
Sbjct: 241 SGRGSFKSRAVYHMEEGD-----IVISALPHRVSGGKILKDIAKQMIDKKLPMVADLRDE 295

Query: 305 SA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+V+ P+++ +D + LM  +F  +D+E    +N+N++ + + PQV  L  IL 
Sbjct: 296 SDRNHPTRLVIVPRSKRIDTEALMHHLFASTDLEVNHKVNLNMIGLDKRPQVKGLLKILN 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R+  + RR  FR+  I+ R+ +L+GLLIAYLNIDE+I IIRN D  K  +++RF 
Sbjct: 356 EWLVYRKRTVRRRLQFRLDKIETRLHLLEGLLIAYLNIDEVIEIIRNYDDSKAELITRFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL ++LR L KLEE QI+SE+ +L  EK+K+  LLNS ++    +  EI+  
Sbjct: 416 LSERQAHAILEIKLRQLAKLEEIQIRSEMSDLNTEKDKLLLLLNSERRFNTLLKKEIKAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +  +     RR+   E   A   T ++  +  E I+V++S +GWIRS K H VD  A
Sbjct: 476 ALNYGDA-----RRSPLVERLEAKALTEKEL-LPNEQISVILSRQGWIRSAKGHDVDAQA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD   I+    +    + +   G+AY+L A +L S R  GE +    + N     
Sbjct: 530 LNYKTGDEFLISAQGCSNQSAIFIDASGRAYSLDAHSLPSARSQGEPLTGRFNQNEQCAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DH 660
           V+  + D   + ++ S  G  FI + S+I +  + GK  + +S    +  V K++   D 
Sbjct: 590 VSVLLGDDNDQYIISSDHGYGFIAKFSDINSRNKNGKALINLSENAYLLPVQKLSNNADD 649

Query: 661 VAV-VGENRKLLIFSIDQIPEMSRGKGVRLQSY------KDGGISDVICFKICEGLTWID 713
           + + +    ++LIF ++ +P +SRGKG ++ +       K      ++     EG   + 
Sbjct: 650 LCLTISNEGRMLIFPVNSLPNLSRGKGNKMINIMGAKATKREEFVTMLRIIPKEGSVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL+ + G+RG  G  +P+G  R    
Sbjct: 710 AGKRKLTLKASDLVAYQGERGRRGGKLPRGLQRVDNI 746


>gi|284008570|emb|CBA75133.1| DNA topoisomerase IV subunit A [Arsenophonus nasoniae]
          Length = 751

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 268/748 (35%), Positives = 441/748 (58%), Gaps = 23/748 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+   L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SEITHDGVEQQPLYTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNA 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE +L  +    V +   ++   +EP   P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAETLLSELGLGTVAWTPNFDGTLTEPKTLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A +AL++NP+  +  L+++I  PD+PT   I+ S+E I + Y+ GRG
Sbjct: 182 TDIPPHNAREVASALVALLENPKADLNMLMDFIPAPDYPTEAEIISSKEDIQKIYQTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W +++        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SIRLRAVWEIDD-----GHAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRIDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILNEWLL 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RRE +  R + R++ + +R+ IL GLLIAYLNIDE+I IIRNED+PK V+V+RF+L+E 
Sbjct: 357 FRRETVRNRLNHRLEKVLKRLHILDGLLIAYLNIDEVIHIIRNEDEPKAVLVARFALSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q ++IL L+LR L KLEE++++ E D+L  E++++ ++L S ++    I  EI    + +
Sbjct: 417 QAESILELKLRHLAKLEEFKLRGEQDDLAKERDQLQAILGSERRLNTLIKKEIETDAQTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A KA  +  ++  EP+T+++S  GW+RS K H +D + L++K
Sbjct: 477 GD-----DRRSPLKERIEA-KAMNEHDILPSEPVTIILSVMGWVRSAKGHDIDPTNLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD    A    T   ++ L + G++Y+L   +L S RG GE +   + L     I    
Sbjct: 531 AGDGFCSAARGKTNQPVVFLDSTGRSYSLDPLDLPSARGQGEPLTGKLALPPGATIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAV 663
                 K L+ S  G  FI   S+++A  + GK  + + S  K+   ++V  +    +  
Sbjct: 591 TAAEEQKYLLASDAGYGFICTFSDLVAKNKAGKALITLPSNAKVLAPLEVNNEQQDLLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAGR 717
           + +  ++LIF + ++P++S+GKG ++ +           +   + F   +    +    R
Sbjct: 651 ITKAGRMLIFPVSELPQLSKGKGNKIINISAAQSASRDDLLVWLMFLQPQSSITLYFGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
               +  DL  +  +RG  GS +P+G  
Sbjct: 711 KLKLNPEDLQKYRAERGRKGSSLPRGLQ 738


>gi|154151175|ref|YP_001404793.1| DNA gyrase, A subunit [Candidatus Methanoregula boonei 6A8]
 gi|153999727|gb|ABS56150.1| DNA gyrase, A subunit [Methanoregula boonei 6A8]
          Length = 829

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 232/746 (31%), Positives = 373/746 (50%), Gaps = 15/746 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + T      + +S+   ++  ++ YA+S I +RAIPD+RDG KPVHRR ++AM +MG   
Sbjct: 8   AGTPETHKTEPISIEQEMKTSFINYAMSVIIQRAIPDVRDGLKPVHRRSLYAMWDMGNTS 67

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               KKSAR+VG+V+GK HPHGD S+YD++V++AQPF  R+PL+ GQGNFG++DGD+AAA
Sbjct: 68  DKPTKKSARVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRHPLVQGQGNFGSVDGDAAAA 127

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE R+   AE +L+ +D++ V+F   Y+E   EP V PSK PNLL NGT GIAVGMA
Sbjct: 128 SRYTEVRLFPYAEALLEDLDKETVEFVPNYDESLKEPTVLPSKIPNLLVNGTDGIAVGMA 187

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T +P HN++E+C A    +D P + +E+LL+ + GPDFPTGG I+   + +   Y  G+G
Sbjct: 188 TKMPPHNLREVCAAVNRFLDEPSVPVEELLKIMPGPDFPTGG-ILMGVDGVKNIYATGQG 246

Query: 249 GFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
              VR    +EE   G+    I+VTE+PYQV K++ I  IA+++  K++  + DIRDES 
Sbjct: 247 RIVVRGVAEIEESEGGNRGDRIIVTELPYQVNKAQWITAIADMVKDKKLDGISDIRDESD 306

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   V+F   +     +++ +++  + +E+ F      +     P+++ L  +L  ++ 
Sbjct: 307 KDGIRVVFELRKGTISAVILNNLYRFTALESGFSAYNLAIVD-GTPKLLNLPALLGNFVH 365

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSL 423
           HR EV+ RRS F ++    RV IL GLL A  +ID+IIA IR  D         +S F L
Sbjct: 366 HRIEVIRRRSEFDLKKCQERVHILNGLLTALASIDKIIAAIRGSDTVDNARIALISGFGL 425

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q +AIL ++LR L  LE+ +I  E   L AE  K++++L S +   ++I  E  E+ 
Sbjct: 426 DELQANAILQMQLRRLAALEQQKIVDEKSTLEAEILKLETILASEENIKDEIRRETSEIA 485

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
             F  +             +          +       +   +    R  +     ++ +
Sbjct: 486 LKFGDARRTEITLDASDLSTEDLIEDKTVLVSITTANYIKRMDLDTYRKQRRGGHGITGM 545

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
             KE D +     A   D +L  +  G+ Y L    +       +   ++  LN   ++V
Sbjct: 546 TTKEDDVVSSVFAAGMKDYLLCFTNIGRVYWLKVYQIPESSRIAKGKPIVNLLNLKDEVV 605

Query: 604 TAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
           T  +    +     LL  +  G    + + E       G   +++   +K+  V+     
Sbjct: 606 TTVIPIREFRKDRYLLFATQLGQVIKIPQDEFSFPRSTGTNAIRLRENDKLVDVITTDNT 665

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             V +       L F  D +  + RG  GV     +      ++   + E    +     
Sbjct: 666 KEVVLSTRFGYGLRFHEDTVRIVGRGASGVIGMRLRGNDT--IVALTLVEKDHLLSITDA 723

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKG 743
            + +           R  +G    + 
Sbjct: 724 GFGKRTEFDDFRGHGRATMGVKNMQV 749



 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 3/110 (2%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKV-TG 658
           D + A        LL ++  G     E  +   + R       +    + +     V   
Sbjct: 704 DTIVALTLVEKDHLLSITDAGFGKRTEFDDFRGHGRATMGVKNMQVERDVVIHSRAVADT 763

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE 707
           D + V+  +  ++  S++ I    RG KGV++    +      +     E
Sbjct: 764 DEIFVMTASGVVIRTSVNSIRITGRGAKGVKIMRLDEKDKVIGVAIVTPE 813


>gi|322831366|ref|YP_004211393.1| DNA topoisomerase IV, A subunit [Rahnella sp. Y9602]
 gi|321166567|gb|ADW72266.1| DNA topoisomerase IV, A subunit [Rahnella sp. Y9602]
          Length = 757

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 279/753 (37%), Positives = 445/753 (59%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   
Sbjct: 2   SEMTHDGTERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSNN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L+ + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLRELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+  AA+AL++ P  S+E LLE++ GPDFPT   I+  R  I + Y  G+G
Sbjct: 182 TDIPPHNIREVAAAAVALLEKPNSSLEDLLEFVQGPDFPTEAEIITPRNEIRKMYESGKG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWHKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +NMN++ +   PQV  L  IL EWLA
Sbjct: 297 NPTRLVVVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDHRPQVKGLLEILTEWLA 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ + RR +FR+  + +R+ IL+GLL A+LNIDE+I IIR ED+PKPV++ RF L++ 
Sbjct: 357 YRRDTVRRRLNFRLDKVLKRLHILEGLLTAFLNIDEVIHIIRTEDEPKPVLMQRFELSDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+   E F
Sbjct: 417 QAEAILELKLRHLAKLEETKIRGEQDELAKERDQLQALLASERKLSTLIRKEIQADAEAF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A +A  +   I  EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 477 GDE-----RRSPITEREEA-RAMSEHDFIPSEPVTIVLSESGWVRSAKGHDIDASGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAAKGKSNQPVVFMDSTGRSYALDPTTLPSARGQGEPLTGKLTPPPGATIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     KLL+ S  G  F+   ++++A  R GK  + +    K    +++ G    +  +
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFNDLVARNRAGKAMITLPDNAKAFPPMELHGSDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
               ++L+F +  +P++S+GKG ++ S         +  ++ ++     +    +    R
Sbjct: 651 TAAGRMLLFPVADLPQLSKGKGNKIVSIPAAQAASGEDKLAWLLVL-PPQTSITLHVGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +  +RG  G+L+P+G  R  + 
Sbjct: 710 KLVLRPEDLQKFRAERGRKGTLLPRGLQRIDRV 742


>gi|50119304|ref|YP_048471.1| DNA topoisomerase IV subunit A [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609830|emb|CAG73264.1| topoisomerase IV subunit A [Pectobacterium atrosepticum SCRI1043]
          Length = 756

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 274/752 (36%), Positives = 452/752 (60%), Gaps = 23/752 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  ++++LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+ L++NP+ S++ LL+++ GPDFPT   I+  R+ + + Y+ GRG
Sbjct: 182 TDIPPHNVREVAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E 
Sbjct: 357 FRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E  +L  E++++ +LL S ++  N I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQGDLAKERDQLQALLASERKLSNLIKKEIQSDAQAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A KA  +   +  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLHERGEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L   ++ S RG GE +   +       I    
Sbjct: 531 AGDSFRAAAKGKSNQPVVFIDSTGRSYALDPISMPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +      LL+ S  G  F+   ++++A  R GK  + +    K    +++ G+   +  +
Sbjct: 591 MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALAPIEIKGEDNLLMAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRS 718
               ++L+F +  +P++S+GKG ++ S      S+       +     +    +    R 
Sbjct: 651 TAAGRMLLFPVSDLPQLSKGKGNKIVSISSADFSEGKDRLTWLYLLPPQASVTLYFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                N+L  + G+RG  G+L+ +G  R  + 
Sbjct: 711 LVLRPNELQKYQGERGRKGTLL-RGLQRIDRI 741


>gi|217972003|ref|YP_002356754.1| DNA topoisomerase IV subunit A [Shewanella baltica OS223]
 gi|217497138|gb|ACK45331.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS223]
          Length = 758

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 256/757 (33%), Positives = 434/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D+P++ +E+L+ ++ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLDLEQLMAFVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R RA + V         I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSLRARAVYTV-----DGGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RFS
Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVVSRLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q ++IL L+LR L KLEE++I +E + L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LSDKQAESILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+    +    +A  +Q +   E +TVV+S +GW+R  K H +D  +
Sbjct: 476 AETYGD-----DRRSPIV-LRNESRALTEQELTPTEAVTVVLSEKGWVRCAKGHDIDPLS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKSGDQYLCSAIGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K      +      
Sbjct: 590 QHVLMGEEDQCYLLATDAGYGFICSYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC---FKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++      +     +++        +    + 
Sbjct: 650 SLLAITNEGRMLLFSLEALPQLSKGKGNKIIGIPTERAKNREELMTHLQLVPSDTPVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|126175767|ref|YP_001051916.1| DNA topoisomerase IV subunit A [Shewanella baltica OS155]
 gi|152999327|ref|YP_001365008.1| DNA topoisomerase IV subunit A [Shewanella baltica OS185]
 gi|160873942|ref|YP_001553258.1| DNA topoisomerase IV subunit A [Shewanella baltica OS195]
 gi|304411162|ref|ZP_07392777.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS183]
 gi|307306457|ref|ZP_07586200.1| DNA topoisomerase IV, A subunit [Shewanella baltica BA175]
 gi|125998972|gb|ABN63047.1| DNA topoisomerase IV subunit A [Shewanella baltica OS155]
 gi|151363945|gb|ABS06945.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS185]
 gi|160859464|gb|ABX47998.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS195]
 gi|304350355|gb|EFM14758.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS183]
 gi|306910748|gb|EFN41176.1| DNA topoisomerase IV, A subunit [Shewanella baltica BA175]
 gi|315266174|gb|ADT93027.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS678]
          Length = 758

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 256/757 (33%), Positives = 434/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D+P++ +E+L+ ++ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMAFVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R RA + V         I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSLRARAVYTV-----DGGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RFS
Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVVSRLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q ++IL L+LR L KLEE++I +E + L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LSDKQAESILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+    +    +A  +Q +   E +TVV+S +GW+R  K H +D  +
Sbjct: 476 AETYGD-----DRRSPIV-LRNESRALTEQELTPTEAVTVVLSEKGWVRCAKGHDIDPLS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKSGDQYLCSAIGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K      +      
Sbjct: 590 QHVLMGEEDQCYLLATDAGYGFICSYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC---FKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++      +     +++        +    + 
Sbjct: 650 SLLAITNEGRMLLFSLEALPQLSKGKGNKIIGIPTERAKNREELMTHLQLVPSDTPVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|88607482|ref|YP_505474.1| DNA gyrase subunit A [Anaplasma phagocytophilum HZ]
 gi|88598545|gb|ABD44015.1| DNA gyrase, A subunit [Anaplasma phagocytophilum HZ]
          Length = 906

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 245/837 (29%), Positives = 396/837 (47%), Gaps = 99/837 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + V  VS+   LE+ YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    +
Sbjct: 1   MSDGVLPVSIEKELEDSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYSMYKSGYDHDKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+AR+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG++DGD  A+ RYT
Sbjct: 61  KKAARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSVDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ Q A  +L  +DED VDFR  Y+E + EPVV P++FPN+L NG  G+AVGM+T+IP
Sbjct: 121 EARLAQAAHFLLNDIDEDTVDFRPNYDENEQEPVVLPAEFPNVLVNGAGGVAVGMSTNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +A++  IDNPE+++E+L+  I GPDFPTGG ++     I  ++  GRG   +
Sbjct: 181 SHNLGEIIDASVMYIDNPEVTLEELMTVIPGPDFPTGG-VIMGDAGIKSAFATGRGTIII 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +EE+  G   I++ EIPYQ  K++L+E+I EL+  K+I  + D+RDES +    V
Sbjct: 240 QGKTHIEELPSGRQAIIIDEIPYQTNKAKLVERIHELVKEKKIEGVSDLRDESNKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++  +++  +  L+ + T F +N  VL   R P+VM L  I++ ++A R+EVL
Sbjct: 300 AIELKKQINSQVVLNQLLGLTPLRTSFSINTLVLDNSR-PRVMSLIEIIETFVAFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            RR+ +R++ +  R  +  G+ IA LNIDEI+AIIR          +             
Sbjct: 359 VRRTRYRLKKVRERAHLFIGMYIAVLNIDEIVAIIRASKDAAEAAAALRERTWSPSEEVR 418

Query: 420 ----------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                           R+ LT  Q+ AIL +RL+ L  LE+ +++ EL +++A   +   
Sbjct: 419 GMIELVSDSTGVIEGGRYRLTAPQIKAILEMRLQRLTGLEKGKLEVELQSMVALITEYTK 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L++       +   + +VK   +         +     + +     +  +       V 
Sbjct: 479 ILSTDSLLMCMVREGLLDVKRRVATPRRTTIEESKGDIDAESLIPREEMVVTVTMNGFVK 538

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-- 581
                  R+ K       A   KE D         T   +L  S  GK Y L    L   
Sbjct: 539 RVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLG 598

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIA 633
                G ++  +  L   + I +              +  ++  +S GN      ++   
Sbjct: 599 EPASRGRSLVNIFPLAEGETITSVMPLPDVGVDGGVESMDVVFATSSGNIRRNALADFQY 658

Query: 634 NTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK---GVRL 689
               GK  + ++  +++    V V+ DHV +     K + FS+  + +  +G+   GVR 
Sbjct: 659 VPSNGKIAMVLTPGDQLISANVCVSTDHVLLSSRMGKSIRFSVGNVRQF-KGRMSDGVRA 717

Query: 690 QSYKDGGISDVICFK--------------------------------------------- 704
               +G     +                                                
Sbjct: 718 IKLAEGDQVISMSVLHGSEASSEVREAYLKIPVDSRIKAAESDGESIGKRVSGMLEGLQL 777

Query: 705 --------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   + +    +      + +  +        RGGVG L      R+GK ++S
Sbjct: 778 SEETFVDMVKKEQFILTVTENGFGKRTSAYEYRTTARGGVGVLNILTTARNGKVVAS 834



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 6/140 (4%)

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           + A              +L  L  +++     +      +L V+  G        E    
Sbjct: 754 IKAAESDGESIGKRVSGMLEGLQLSEE-TFVDMVKKEQFILTVTENGFGKRTSAYEYRTT 812

Query: 635 TRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R G   L +     + + +        D V ++ +  KL+  S+  I  + R  +GV L
Sbjct: 813 ARGGVGVLNILTTARNGKVVASFSVAHTDQVMLITDKGKLIRISVSDIRIIGRSTQGVTL 872

Query: 690 QSYKDGGISDVICFKICEGL 709
              + G     +   I  G 
Sbjct: 873 FKTEKGEKVVSVALVIDSGD 892


>gi|13541373|ref|NP_111061.1| DNA gyrase subunit A [Thermoplasma volcanium GSS1]
 gi|14324757|dbj|BAB59684.1| DNA gyrase subunit a [Thermoplasma volcanium GSS1]
          Length = 792

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 228/742 (30%), Positives = 379/742 (51%), Gaps = 16/742 (2%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +   +   +++ YL YA+S I  RAIPD RDG KPV RR+++AM E+ +     +KK AR
Sbjct: 2   EKRPVEVEIKKSYLEYAMSVIVSRAIPDARDGLKPVQRRVLYAMRELNVTHDKPYKKCAR 61

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVGE +GK HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEAR+T
Sbjct: 62  IVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLT 121

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           Q AE +++ +DE+ V+FR  ++    EP   PSK PNLL NG+SGIAVGMAT++  HN+ 
Sbjct: 122 QFAEDMMEDIDEETVNFRLNFDGTLPEPEYLPSKVPNLLVNGSSGIAVGMATNMVPHNLS 181

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           EI +A    + N   S++ LL+ + GPDFP GGI+  S++ ++E+YR G+G   V+    
Sbjct: 182 EISDAIKYELRNRSCSVDDLLKIVKGPDFPGGGIVFYSKD-LIEAYRTGKGKVIVQGEVD 240

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
             E       I++  +PY V KS L+E IA L     I  + DI+DES  +   ++    
Sbjct: 241 TSEER----RIIIKSLPYGVNKSVLVESIANLAKNGIIKDITDIKDESDRNGIRIVIRVR 296

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 L+M  ++  +D+ET   +   VL  G  P+++ L  +L +++ HR +V+ +RS 
Sbjct: 297 DEDLKPLVMNQLYEHTDLETTIGIINLVLV-GNQPKLLNLKQLLDQFIDHRLDVILKRSR 355

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
           +R++  + R ++L G+L A  NID ++ I+R  D  +     +   F+L + QV AIL +
Sbjct: 356 YRLEKKNERHDVLSGVLTAIDNIDRVVEIVRGSDDVQKASETLKKTFNLNDRQVKAILEM 415

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  +E   + +EL ++  E   +  ++ S +++   +  EI E+K+ +        
Sbjct: 416 RLQRLVHMERESVVNELKSIEKEIADLKEIIESEQKRIEVLEGEIDEIKKRYGDKRRTKI 475

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           +     E S  D    ++++I      +V          +           K  D++K  
Sbjct: 476 KFKEIGERSTEDLIPNEESVIMLSYGGLVKRVPIDEYRSQRRGGKGVNTSMKISDTVKSI 535

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAF--VYDS 610
           +H  + D I   ++ G+ + + A  +          +    + L  N+ +        D 
Sbjct: 536 IHCFSHDTIYFFTSGGRVFKIKAYEIPKKSRTSLGVSAGAFLKLQQNERVTEVMKAPADR 595

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
              L++V+  G         +      G   + +  ++++     +  D ++ V+    K
Sbjct: 596 GEHLVLVTRNGFVKKTPADPVFDAKSSGLKIITLDGDDELVSASTIDTDTNMFVLSSKGK 655

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
             +F+  ++ E  R   GVR     +     V  F + EG   +  + + + +  N    
Sbjct: 656 GSVFNTSEVRETGRSSMGVRSMRLGEEDYV-VTAFVVKEGQDILSISEKGFGKRTNLSEF 714

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
            +  RG  G LV +   R+GK 
Sbjct: 715 PVHHRGSGGVLVYRDTERTGKI 736


>gi|88812693|ref|ZP_01127940.1| DNA topoisomerase IV subunit A [Nitrococcus mobilis Nb-231]
 gi|88790109|gb|EAR21229.1| DNA topoisomerase IV subunit A [Nitrococcus mobilis Nb-231]
          Length = 747

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 288/746 (38%), Positives = 433/746 (58%), Gaps = 23/746 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + + +   LR   E+ YL Y++  I +RA+P L DG KPV RRII+AMSE+G+   A +K
Sbjct: 5   DADYETQPLREFTEKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGISAAAKYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RYT
Sbjct: 65  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADEPKSFAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T+ A+L+L  + E  V++   ++    EP + P++ PNLL NG++GIAVGMAT IP
Sbjct: 125 EARLTRYAQLLLTELGEGTVEWMPNFDGTLEEPRILPARLPNLLLNGSTGIAVGMATDIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  A + L+D P+ S+  L E I+GPDFPT   I+   E I   Y +G GG R 
Sbjct: 185 PHNLREVVAACIHLLDQPDASVADLCEAILGPDFPTRAEIITPAEDIRRFYEIGYGGLRQ 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VR 310
           RA W      R    IV+T +PYQV  S+++E+IA  + +K++P++ED+RDES  D   R
Sbjct: 245 RACWE-----RDGLDIVITALPYQVSGSKVLEQIAAQMQSKKLPMVEDLRDESDHDSPTR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +++ P++  +D + LM+ +F  +D+E  + +N+NV+ +   P+V  L  IL EWL  R E
Sbjct: 300 LIITPRSARVDAEPLMQHLFATTDLEKTYRVNLNVIGLDARPRVRNLREILTEWLRFRTE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            + RR  +R+  ++ R+ +L G LIA+LNIDE+IAIIR EDKPK V++ RF LTE Q +A
Sbjct: 360 TVCRRLQWRLDKVEARLHLLDGYLIAFLNIDEVIAIIRAEDKPKLVLMERFGLTERQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L KLEE +I +E D LL E++++ S+LNS  +    I  E++E  + +    
Sbjct: 420 ILELRLRHLAKLEEIKIHAEQDELLRERDRLRSILNSEARLKALIKSELQEDAQKYGDP- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                R +      + +A     ++  EP+T+V+S RGWIR+ K H VD   L +K GD 
Sbjct: 479 -----RCSPLVQRGSARALSDTELVPSEPVTLVLSQRGWIRAAKGHDVDAQRLSYKAGDG 533

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
            + A    T  + + L + G+AY+LPA  L S RG GE +   + L    +     + D 
Sbjct: 534 YRDAAIGRTNQQAVFLDSQGRAYSLPAHTLPSARGQGEPLTGRLSLPGGGEFSYVLLGDP 593

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGEN 667
               L+ S  G  FI     + +  R GK  L V+   +     ++     D +      
Sbjct: 594 DSLWLLASDHGYGFITRLGNLYSKNRAGKAVLSVAGGAQPLKPARIYALAQDRLVAATTA 653

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICEG-LTWIDSAGRSYNR 721
            +LL+F + ++PE+ +GKG +L        K           +  G    + +  R+   
Sbjct: 654 GRLLVFPLQELPELGKGKGNKLIQIPSPRLKTREEVVAGVLAVPPGRAVILQAGKRTLTL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRS 747
             +DL  +LG+RG  G  +P+GF R 
Sbjct: 714 RPSDLERYLGQRGRRGDALPRGFQRV 739


>gi|68171271|ref|ZP_00544673.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657796|ref|YP_507653.1| DNA gyrase subunit A [Ehrlichia chaffeensis str. Arkansas]
 gi|67999318|gb|EAM85965.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599253|gb|ABD44722.1| DNA gyrase, A subunit [Ehrlichia chaffeensis str. Arkansas]
          Length = 898

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 245/839 (29%), Positives = 392/839 (46%), Gaps = 98/839 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ N     NV  VS+   LE+ YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G
Sbjct: 1   MSDVN-----NVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSG 55

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+G  +KK+AR+VG+V+GK HPH D ++YDSLVR+AQ F    PLI  QGNFG+IDGD 
Sbjct: 56  YDYGKPYKKAARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDP 115

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            A+ RYTEAR+ + A  +L  +DED VDFR  Y+E + EPVV P++FPN+L NG  G+AV
Sbjct: 116 PASMRYTEARLAKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAV 175

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM+T+IPSHN+ E+ +A +A IDNPEI+ ++L+  + GPDFPTGG I+     I  ++  
Sbjct: 176 GMSTNIPSHNLGEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTIL-GDAGIRSAFMT 234

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   ++ +  +E++  G   I++ EIPYQV K++LIE+I ELI  K+I  + D+RDES
Sbjct: 235 GKGTIIIQGKTHLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    V     + +   +++  I  L+ + T F +N  VL     P+VM L  I+  ++
Sbjct: 295 NKMGIRVAIELKKQVSHQVILNQILGLTPLRTSFSINTLVLD-NNKPKVMSLPDIISTFV 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            +R+EVL RR+ FR++ +  R  +  G+ IA LNID++IAIIR+                
Sbjct: 354 EYRKEVLTRRTQFRLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRDTAEATKRLLECKW 413

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                              V+ +   LT  QV +IL ++L+ L  LE+ +++ +L ++++
Sbjct: 414 DALTSVREMIELVADSKSIVIDNVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVS 473

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             ++   LL + +     I    +E+K   +         + F              +  
Sbjct: 474 MIKQYTELLKNKESLLQLIKDGFKEIKAKLAVPRRTTIDYSHFETDIEDLIPKEDMVVTV 533

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +  +     R+ K           KE D +      +T   +L  S  G+ Y L 
Sbjct: 534 TMSGYIKRAKLSNYRAQKRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLK 593

Query: 577 AGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEE 628
              L        G ++  +  L+ N+ I +               ++  ++ GN      
Sbjct: 594 VYKLPLGEPTSRGRSLVNIFPLSENESITSVMPLPDNVEDAEILNIVFATASGNLRRNAL 653

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-MSR-GK 685
           S+       GK  + + + + +  V      DHV +     K + FS+  + +   R   
Sbjct: 654 SDFQYVPSNGKIAMVLDTGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSD 713

Query: 686 GVRLQSYKDGGISDVICFKIC--------------------------------------- 706
           GVR            +   +                                        
Sbjct: 714 GVRAIKLSSDDNVISMSVLLAMDIDSEKKDLYLKVPLDKRMCVKEEGVVNGGIAKILCDL 773

Query: 707 ------------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                            +      + +  +        RGGVG +      R+G  ++S
Sbjct: 774 GLEQDIFVTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTARNGNVVAS 832



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 40/119 (33%), Gaps = 7/119 (5%)

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVK 655
           +  +   +  +   +L V+  G        E     R G   + +     +   +     
Sbjct: 776 EQDIFVTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTARNGNVVASFPV 835

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGLTW 711
            + DH+ ++ +  KL+  ++  I  + R  +GV L     ++  +S        +    
Sbjct: 836 ESNDHIMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKREKVVSVAKIIDAKDNSDI 894


>gi|300905852|ref|ZP_07123585.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 84-1]
 gi|301301950|ref|ZP_07208084.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 124-1]
 gi|300402321|gb|EFJ85859.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 84-1]
 gi|300842931|gb|EFK70691.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 124-1]
 gi|315256920|gb|EFU36888.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 85-1]
          Length = 752

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A  RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAEMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT      R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|330448752|ref|ZP_08312399.1| DNA topoisomerase IV, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492943|dbj|GAA06896.1| DNA topoisomerase IV, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 759

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 272/753 (36%), Positives = 434/753 (57%), Gaps = 23/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TDVSMDGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ +E++L  + +   D+   ++    EP + P++ P++L NG +GIAVGMA
Sbjct: 122 MRYTESRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  AA+ +IDNP+  ++ L+E++ GPD+PT   I+ S+  + + Y+ GRG
Sbjct: 182 TDIPPHNAREVANAAVHMIDNPKADLDALMEFVQGPDYPTEAEIITSKADLKKVYKSGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E        IV+T +P+Q   ++L+E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SIKMRAVWHKENGD-----IVITALPHQTSGAKLLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIV+ P++  +D + LM  +F  +D+E  F  N+N+L +   PQV  L  I+ EWL 
Sbjct: 297 NPTRIVIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGLVQIIAEWLE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR  + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIR+ED PK  ++SRF L+  
Sbjct: 357 YRRTTVRRRLQYRLDKVIARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLSAI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L KLEE +I+ E D L  E+E+++ LL S ++    I  EI    E +
Sbjct: 417 QADAILEIKLRQLAKLEEIKIRGEQDELSKEREQLEKLLGSERRLNTLIKKEILSDAEKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A KA  ++ +I  E ITVV+S++GWIR  K H VD + L +K
Sbjct: 477 GDE-----RRSPLVEREEA-KALTERDLIPSEAITVVLSDKGWIRHAKGHEVDPTTLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+        +    + L +DG++Y L + +L S R  GE I   ++L    ++    
Sbjct: 531 SGDNYLAHARGKSNQPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGTNMRQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
           + +     L+ S  G  FI + +++++  + GK  L V     +     V     D +  
Sbjct: 591 MAEDEQLWLMASDAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVDNIDSDEILA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAGR 717
           +    ++L+F I  +P++ +GKG ++ +               +     +    + +  R
Sbjct: 651 ITNEGRMLLFPIKDLPQLGKGKGNKIINIPSARAKAREEFLSYLAVIGADTHVTLHAGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  + G+RG  GS++P+G  R  + 
Sbjct: 711 KLCLKPADLDNFRGERGRRGSMLPRGLQRVTRM 743


>gi|167463190|ref|ZP_02328279.1| DNA topoisomerase IV subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381895|ref|ZP_08055849.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154283|gb|EFX46605.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 817

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 232/743 (31%), Positives = 392/743 (52%), Gaps = 24/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E      L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      ++K
Sbjct: 3   EQFMPAFLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDAGNTPDKPYRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+V+G  HPHGD S+Y+ +VR+AQP+   Y LI G GN+G+ D D AAA RYTEA
Sbjct: 63  SAKTVGDVMGNYHPHGDASIYEGMVRMAQPWKMGYVLIDGHGNWGSQDDDPAAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +++  V F+D ++    EPVV PS+FPNLL NG SGI+ G AT IP+H
Sbjct: 123 RLSEIAMELLRDIEKRTVLFKDNFDNTAKEPVVLPSRFPNLLVNGASGISSGFATEIPTH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +A +A++D PE+++E+L+  I GPDFPTGG I+   E I ++Y  G+G   VRA
Sbjct: 183 NLREVIDACVAMMDQPEMTVEQLMGIIKGPDFPTGG-IIMGEEGIKDAYTSGKGRIYVRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E V  G   I+VTEIPYQV KSRL+  I  + + K++  + ++RDES  D   ++ 
Sbjct: 242 KTSIESVRGGRQQIIVTEIPYQVVKSRLVTAIENIRLDKKVEGISEVRDESGRDGLRIVV 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +   + P+ + +  +L+ ++ H+++V+  
Sbjct: 302 DLKKDADAQGILAYLLKKTDLQVTYNFNMVAIV-NKTPKQLGIREMLQAYIDHQKDVVIH 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  +L+GL+ A   +DEII  I+        +  +V +++ TE Q DAI
Sbjct: 361 RTQYDLEKAEDRAHVLEGLVKALNILDEIIETIKASKNRQDAQNNLVEKYAFTERQADAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+L  L  LE   ++ EL++++ +   + S+L S K+  N I  E+ E+++ +     
Sbjct: 421 LTLQLYRLTNLEVTSLEKELNDIMKKITHLCSILESPKKLANVIKKEMIEIRDKYGID-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-----DLSALHFK 546
               R +  +    +     + M+  E + V +S  G+I+ +   S      +L     K
Sbjct: 479 ----RRSEIQGEVEELKVNLEVMVTPEDVLVTLSQDGYIKRVSILSYTRSGGELHTTGLK 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           EGD ++  L  +T D +L+ +  G+ + LP   +   +      AI  +I ++    IV 
Sbjct: 535 EGDFVRHLLEVNTIDSLLIFTNRGQYFLLPVHQIPEYKWKDNGTAIVNVIPMSKEDRIVN 594

Query: 605 AFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GD 659
                   +S   L+ V+ KG     E  E +          KV   +++  V       
Sbjct: 595 VIPVKNFEESGKSLVFVTKKGQVKRTELKEYMTKRSTAVVACKVGDGDEVIQVEVSESNK 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V +    + F  D++  M R   GVR    KDG       +   +    +  + R 
Sbjct: 655 DLLLVTKQGMSIRFREDEVNPMGRAAGGVRGIQLKDGDEVISAEWIFGDEGELLVISDRG 714

Query: 719 YNRSENDLLGWLGKRGGVGSLVP 741
           Y +        L  RGG G L  
Sbjct: 715 YAKRTLVFDYPLQARGGKGILTF 737


>gi|238918167|ref|YP_002931681.1| DNA topoisomerase IV subunit A [Edwardsiella ictaluri 93-146]
 gi|238867735|gb|ACR67446.1| DNA topoisomerase IV, A subunit, putative [Edwardsiella ictaluri
           93-146]
          Length = 760

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 284/756 (37%), Positives = 450/756 (59%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +N + V+L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTHDNSERVALHAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LSASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP   P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSRYAEILLSELGQGTVDYVANFDGTLQEPKFLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A +AL+DNP+ S++ LL +I GPDFPT   I+  R+ I + YR
Sbjct: 178 VGMATDIPPHNAREVAAALVALLDNPQSSLDDLLTHIQGPDFPTEAEIITPRDEIHKIYR 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  EE       IV++ +P+Q   ++++E+IA  + AK++P+++D+RDE
Sbjct: 238 TGRGSVRMRAVWRKEEGE-----IVISALPHQTSGAKVLEQIASQMRAKKLPMVDDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  + +NMN++ + R P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRSNRVDLDQLMNHLFATTDLEKSYRINMNMIGLDRRPAVKDLREILS 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL++RRE + RR ++R++ + +R+ IL GLL A+LNIDE+I IIR+ED+PKPV+V+RF 
Sbjct: 353 EWLSYRRETVRRRLNYRLEKVLKRLHILDGLLCAFLNIDEVIHIIRSEDEPKPVLVARFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L +LEE +I+ E D L  E++++ +LL S ++    I  EI   
Sbjct: 413 LSDTQAEAILELKLRHLARLEEVKIRGEQDELAQERDRLQTLLASERKLGTLIKKEIMAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +  +     RR+   E S A +A  +   +  EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AETYGDA-----RRSPLQERSEA-RAMSEHDFVPNEPVTIVLSEGGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD+ + A    +   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LNYKAGDAFRAAARGKSNQPVVFIDSSGRSYALDPLTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S  G  F+   S+++A  R GK  L +     +   +++ GD   
Sbjct: 587 EHVLMAADDQKLLMASDAGYGFVCTFSDLVARNRAGKAMLTLPENANVLTPLEINGDDDM 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDS 714
           +  + E  ++L+F +  +P++S+GKG ++ S               +     +    +  
Sbjct: 647 LLAITEAGRMLMFPVHDLPQLSKGKGNKIVSIPAAQAAAGEDTLKWLLVLAPQTSLTLHI 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL  +  +RG  G+L+P+G  R  + 
Sbjct: 707 GKRKLVMKPQDLQKFRAERGRKGTLLPRGLQRIERV 742


>gi|71057503|emb|CAJ18964.1| topoisomerse IV subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi A]
          Length = 752

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 450/750 (60%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  I  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|251791327|ref|YP_003006048.1| DNA topoisomerase IV subunit A [Dickeya zeae Ech1591]
 gi|247539948|gb|ACT08569.1| DNA topoisomerase IV, A subunit [Dickeya zeae Ech1591]
          Length = 758

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 285/756 (37%), Positives = 453/756 (59%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---MTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  AA+ALID P+ S+E LL Y+ GPDFPT   I+  R+ I + Y 
Sbjct: 178 VGMATDIPPHNVREVAAAAMALIDEPDTSLEALLRYVQGPDFPTDAEIITPRDEIRKMYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+       +V+T +P+QV  +R++E+IA  + AK++P+++D+RDE
Sbjct: 238 SGRGSVRMRAVWKKEDGS-----VVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVLVPRSNRIDFDQVMNHLFATTDLEKSYRINMNMIGLDGRPSVKGLREILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA RR+ + RR +FR+  + +R+ IL+GLLIA+LNIDE+I IIRNED+PKPV++++F 
Sbjct: 353 EWLAFRRDTVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPVLMAKFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +I+ E D+L  E+++I +LL S ++    +  EI+E 
Sbjct: 413 LSDTQAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQIQALLASERKMNTLLKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E   A KA  +  +   EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AKAYGD-----DRRSPLHERGEA-KAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+ + A    +   ++ + + G++Y L    L S RG GE +   + L     I
Sbjct: 527 LSYKAGDAYRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHV 661
               +     +LL+ S  G  FI   ++++A  R GK  L +    ++   +++   D +
Sbjct: 587 EQVLMAADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLPDHARVLPPLELQRDDEL 646

Query: 662 AV-VGENRKLLIFSIDQIPEMSRGKGVRLQS-----YKDGGISDVICFKICEGLTW-IDS 714
            + +    +LL+F +  +P +S+GKG ++ S        G    +    I    +  + +
Sbjct: 647 LLTITAAGRLLLFPVADLPALSKGKGNKIVSIPAAQLASGDDRILWLMTIAPQSSVTLYA 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R Y+    +L  +   RG  G+ +P+G  R  + 
Sbjct: 707 GKRKYSLRPEELQKYQASRGCKGTALPRGLQRVDRI 742


>gi|260459145|ref|ZP_05807400.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075]
 gi|259034699|gb|EEW35955.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075]
          Length = 933

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 261/860 (30%), Positives = 416/860 (48%), Gaps = 123/860 (14%)

Query: 6   ISNSNTL-----VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +++  T          ++ +S+   ++  YL+YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MTDQKTPRGADGGPTGIEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
             E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+
Sbjct: 61  AHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  AA RYTE+R+T+VA  +L+ +D++ VDF+DTY+  D+EP V P++FPNLL NG+
Sbjct: 121 IDGDPPAAMRYTESRLTKVAHELLEDIDKETVDFQDTYDASDTEPKVLPARFPNLLVNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E I GPDFPTGGI++  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLSEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIY 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +R +  +E+ G     I++TE+PYQV K+ +IEK+AEL+  KRI  + D
Sbjct: 240 SAYATGRGSIVMRGKVNIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES      V+    R    D+++  ++  + ++T F  NM  L+ G  P+VM L  +
Sbjct: 300 IRDESDRQGYRVVIELKRDAVADVILNQLYRFTPLQTSFGANMVALN-GGKPEVMNLTDM 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           L+ +++ R EV+ RR+ F ++    R  +L GL IA  NIDE+I +IR    P+      
Sbjct: 359 LRAFVSFREEVITRRTKFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQL 418

Query: 420 ----------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++L+E Q  AIL LRL+ L  L   +I  EL
Sbjct: 419 MERRWPSGDVESLILLIDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + + AE      +L+S  +    +  E+  V++ F        RRT   E++        
Sbjct: 479 NTIGAEIIDYLDILSSRARVQQIVKDELAAVRDEFGTP-----RRT---ELTDGGADMED 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+I+          +      S +  KE D +     A+T   +
Sbjct: 531 EDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPV 590

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G  Y      L   + +  G+A+  ++ L   + I T               ++
Sbjct: 591 LFFSSRGIVYKEKVWRLPIGNPQSRGKALINMLPLEQGERITTIMPLPEDETSWGELDVM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSS-EEKMKLVVKVTG-DHVAVVGENRKLLIF 673
             +++G     + S+ +   R GK  +K+    +++  V   T  D V +   + + + F
Sbjct: 651 FATTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILGVETCTDNDDVLLTANSGQCIRF 710

Query: 674 SIDQIPE-MSRG----KGV------RLQS------------------------------- 691
           S+  +    SR     +G+      R+ S                               
Sbjct: 711 SVGDVRVFQSRNSVGVRGITMAATDRIISMSVIEHVDASPAERAAYLKRAASERRLAAET 770

Query: 692 --------YKDGGISDVICFKI-------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
                     +  I +                   +      Y +  +     L  RGG 
Sbjct: 771 AGEEEEIALTNEEIGEETELSDSRYEELKAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGK 830

Query: 737 GSLVPKGFPRS---GKFLSS 753
           G        ++   G+ +++
Sbjct: 831 GIRATDVS-KTAEIGQLVAT 849



 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 20/94 (21%), Gaps = 3/94 (3%)

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD--VICFKICEGLTW 711
           K    +V  V E       S        RG KG+R             V  F +      
Sbjct: 799 KAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGQLVATFPVGNDDQI 858

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           +  +                 R   G  +     
Sbjct: 859 MLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAE 892


>gi|261492516|ref|ZP_05989069.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261311675|gb|EEY12825.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 748

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 264/751 (35%), Positives = 440/751 (58%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +  +  E ++ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   TTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGM
Sbjct: 122 AMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+ +A++ L+DNP+ +++ +L  + GPD+PT   I+  +  I   Y  GR
Sbjct: 182 ATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV++ +P+Q   S++IE++A  +  K++P+++DIRDES  
Sbjct: 242 GSIKMRAVWKKEEGE-----IVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RR  + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+LT+
Sbjct: 357 SFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKAELMARFNLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+Q+++E   L  E++++  +L S ++  + I  EI+   + 
Sbjct: 417 VQAEAILNLRLRHLAKLEEHQLQAEKSELEKERDELQLILGSERRLNSLIKKEIQADAKA 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E + + KA  +  +   E +TV++S +GW+R  K H +D+ AL +
Sbjct: 477 FASP-----RRSPLVERAES-KAIAESDLTPTEDVTVILSEKGWVRCAKGHDIDVQALSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD         +   ++ L + G+AY L   +L S R  GE +   I L     +   
Sbjct: 531 RAGDDYLAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VA 662
            + +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  D    + 
Sbjct: 591 LMANSETKVLMASDSGYGFICTFEDLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLV 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICE-GLTWIDSAG 716
            +    ++L+F + ++P +S+GKG ++ +      K G         I         S  
Sbjct: 651 AMSNVGRMLVFPVSELPALSKGKGNKIINISAAAAKSGDEYLARLLVIKPTNSLVFVSGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +D+  + G+R   GS + +G   +
Sbjct: 711 RKITLKPSDIDNYRGERARKGSQLVRGLSTN 741


>gi|154235|gb|AAA27180.1| parC [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 752

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 265/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           + A W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 IGAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|168238130|ref|ZP_02663188.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194735135|ref|YP_002116129.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194710637|gb|ACF89858.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288972|gb|EDY28343.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 752

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 265/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|149693017|emb|CAK55543.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|149693019|emb|CAK55544.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 752

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 449/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|62181688|ref|YP_218105.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129321|gb|AAX67024.1| DNA topoisomerase IV, subunit A [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 749

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 266/745 (35%), Positives = 446/745 (59%), Gaps = 25/745 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR
Sbjct: 3   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 62

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARM 136
            VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+
Sbjct: 63  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 122

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN+
Sbjct: 123 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 182

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W
Sbjct: 183 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLF 314
             E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ 
Sbjct: 243 TKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 297

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + R
Sbjct: 298 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L
Sbjct: 358 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILEL 417

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        
Sbjct: 418 KLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD-----D 472

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A
Sbjct: 473 RRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAA 531

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +   +   ++ + T G++Y +    L S RG GE +   + L     +    +     KL
Sbjct: 532 VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKL 591

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLI 672
           L+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + +  ++L+
Sbjct: 592 LMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLM 651

Query: 673 FSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           F +D +P++S+GKG ++ +         D G++ +        LT      R       +
Sbjct: 652 FPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIKLRPEE 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L   +G+RG  G+ + +G  R  + 
Sbjct: 711 LQKVVGERGRRGT-LMRGLQRIDRI 734


>gi|254491713|ref|ZP_05104892.1| DNA topoisomerase IV, A subunit [Methylophaga thiooxidans DMS010]
 gi|224463191|gb|EEF79461.1| DNA topoisomerase IV, A subunit [Methylophaga thiooxydans DMS010]
          Length = 746

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 272/749 (36%), Positives = 442/749 (59%), Gaps = 23/749 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T++ ++++   LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   +
Sbjct: 2   TIIVDDLEQQPLRDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLSALS 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAY 129
             KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY LI GQGN+G++D   S AA 
Sbjct: 62  KHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLIDGQGNWGSMDDPKSFAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+   A+++L  + +   D+   ++    EP + P++ PNLL NGT+GIAVGMAT
Sbjct: 122 RYTEARLAPYAQVLLSELGQGTADWVPNFDGTMDEPSLLPARLPNLLLNGTTGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN++E+  A+L L+ +P +++++LLE I GPDFPTG  I+ S++ I + Y  G G 
Sbjct: 182 DIPPHNLREVVSASLKLLKSPRVTLDELLEDIQGPDFPTGAEIISSQDEIRKIYETGHGS 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            + RA +  E+       I++  +PYQV  ++++E+IA  + AK++P++ D+RDES  + 
Sbjct: 242 VKQRASYNKEDGE-----IIIDALPYQVSGAKILEQIAAQMNAKKLPMVADLRDESDHEH 296

Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            VR+V+ P++  +D D LM  +F  +D+E    +NMN++ M   PQV  L  +L EWL +
Sbjct: 297 PVRLVIVPRSNRVDIDSLMSHLFATTDLERSHRVNMNMIGMDGRPQVKNLRDMLIEWLGY 356

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           R E + RR  +R+  +  R+ +L+GLLIAYLNIDE+IAIIR+ED PK VM+ RFS+T+ Q
Sbjct: 357 RVETVRRRLQYRLDKVLDRMHVLEGLLIAYLNIDEVIAIIRHEDDPKAVMMERFSITDRQ 416

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            ++IL LRLR L KLEE +I+ E+D L  E+++++ LL+S  +    I  E+    E F 
Sbjct: 417 AESILELRLRHLAKLEEMKIRGEMDELSKERKQLELLLSSDTRLKTLIRKELTADAEKFG 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+   E   +      +  +  EP+T+V+S  GW+++ K H VD ++L+F+ 
Sbjct: 477 D-----DRRSQIVERKASKALDATEL-LPTEPLTIVLSESGWVKAAKGHDVDPTSLNFRT 530

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD    ++ A +  +I+ L   G++Y+L A  L S RG GE +   +        V+   
Sbjct: 531 GDRYLTSVKARSNQQIVFLDETGRSYSLSAHTLPSARGQGEPLSGRLQSAPEVRFVSVLA 590

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVV 664
            ++   +L+ ++ G  F+     ++A  + GK    +    ++   + +     D +AV 
Sbjct: 591 VEADKTILLTNTAGYGFVTTLENLLAKNKAGKALFNLPKGAQILPPLLLEDQDNDQMAVA 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDSAGRS 718
             + +LL+F+  +IP +++GKGVRL +      +        +     +    + +  R 
Sbjct: 651 SGDGRLLVFAASEIPTLNKGKGVRLINIPQARFTGGQEWMQSVIIVPQQRSLTLHAGRRH 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  + G+RG  G  +P+G  + 
Sbjct: 711 LTLKPADLEHYAGERGKRGHKLPRGLQKV 739


>gi|312914199|dbj|BAJ38173.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 752

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 450/750 (60%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT      R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|315500084|ref|YP_004088887.1| DNA gyrase, a subunit [Asticcacaulis excentricus CB 48]
 gi|315418096|gb|ADU14736.1| DNA gyrase, A subunit [Asticcacaulis excentricus CB 48]
          Length = 918

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 248/749 (33%), Positives = 380/749 (50%), Gaps = 61/749 (8%)

Query: 6   ISNSNT---LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++++          +  V++   L+  YL YA+S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 1   MTDTPASGLPTPHGISHVTIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIVYAMY 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G      + KSA IVG+V+G+ HPHGD ++YD+LVR+AQPF  R  L+ GQGNFG++D
Sbjct: 61  EEGRTHDKKYVKSANIVGDVMGRYHPHGDGAIYDALVRMAQPFSMRLLLVDGQGNFGSVD 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE+RMT+ AE ++  +D++ VDF D Y+    EP V PS+ PNLL NG  G
Sbjct: 121 GDPPAAMRYTESRMTRAAESLIADIDKNTVDFNDNYDGARQEPSVLPSRIPNLLVNGAGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ EI EA LA++D+PE+S E LL  + GPDFPTGG I+  R    ++
Sbjct: 181 IAVGMATNIPPHNLGEIIEACLAMLDDPEVSTETLLGIVPGPDFPTGGEIL-GRSGARQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              GRG   +R +  VE + +    I+VTE+PYQV K+ LIE IAE++  KRI  + DIR
Sbjct: 240 LLTGRGSVIMRGKASVETIRKDREAIIVTELPYQVNKATLIEHIAEMVREKRIEGISDIR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      ++    R    D+++  ++  S ++T F +NM  L+    PQ M L  +L+
Sbjct: 300 DESDRQGMRMVIELKRDASGDVILNQLYRYSALQTSFGVNMLALNH-GRPQQMGLRKLLE 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------- 415
            +L  R EV+ RR+ F +     R  +L GL IA  NIDEII IIR+   P         
Sbjct: 359 IFLDFREEVVVRRTRFELNKARDRGHVLVGLAIAVANIDEIIHIIRSSVDPTEARERLTA 418

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        LTE Q  AIL L L  L  L   +I  E   
Sbjct: 419 KNWPAGDMSPLIELIADPRSIVFEGGEVRLTEEQARAILALTLSRLTGLGRDEIFGEART 478

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L A   +  ++L+S ++    +  E+ EVK ++++      RR+   +    +     + 
Sbjct: 479 LAASIAEYLAILSSRERILGIVREELEEVKALYAEP-----RRSLIVD---GEADIEDED 530

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +++ G+++                 S +  K+ D++     A T   +L 
Sbjct: 531 LIPREDMVVTVTHSGYVKRTPLSAYRTQHRGGKGRSGMAMKDEDAITGIYAASTHQPMLF 590

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ GKAY L    L   + +  G+A   L+ L+ ++ +                 ++  
Sbjct: 591 FSSTGKAYKLKVWRLPLGTPQSKGKAFVNLLPLDKHETVTNILTLPEDEAAWDRLDIVFA 650

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           +  G+    + S+ +   R GK  +K+   + +  V   T D  V +   + + + F++D
Sbjct: 651 TRSGDVRRNKLSDFVNVNRAGKIAMKLEEGDAIVGVALCTEDQDVLLSTASGRSIRFAVD 710

Query: 677 QIPE-MSR-GKGVRLQSYKDGGISDVICF 703
           ++     R   GVR     +      +  
Sbjct: 711 EVRVFKGRDSTGVRGVRLGEDDTVISMAI 739



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKV-SSEEKMKLVVKVTG-DHVAVVG 665
           +   +L ++  G        +     R G     + +     K+     V   D + +V 
Sbjct: 799 AEEFILTIADTGFGKRTSSYDYRRTGRGGQGIVAIDLSKRGGKLVASFPVEDTDQLLLVT 858

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           +  +L+   + QI    R  +GV +       +  V
Sbjct: 859 DGGQLIRTPVSQIRVAGRNTQGVTIFRTSGEKVVSV 894



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/85 (10%), Positives = 20/85 (23%), Gaps = 1/85 (1%)

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           +  + +       S        RG +G+        G   V  F + +    +       
Sbjct: 803 ILTIADTGFGKRTSSYDYRRTGRGGQGIVAIDLSKRGGKLVASFPVEDTDQLLLVTDGGQ 862

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744
                     +  R   G  + +  
Sbjct: 863 LIRTPVSQIRVAGRNTQGVTIFRTS 887



 Score = 44.4 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 10/40 (25%), Gaps = 2/40 (5%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS--LVPK 742
           I      +      Y +           RGG G   +  K
Sbjct: 532 IPREDMVVTVTHSGYVKRTPLSAYRTQHRGGKGRSGMAMK 571


>gi|239995394|ref|ZP_04715918.1| DNA topoisomerase IV subunit A [Alteromonas macleodii ATCC 27126]
          Length = 761

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 258/757 (34%), Positives = 427/757 (56%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMS++G
Sbjct: 1   MSDEIIINRDGVEQLPLRRFTEDAYLNYSMYVIMDRALPHISDGLKPVQRRIIYAMSDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSANAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA++++ +E++L  + +  VD+   ++   +EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEAKLSRFSEVLLNELGQGTVDWVPNFDGTLNEPSVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DN +  +  +LE++ GPD+PT   I+  +  I + Y 
Sbjct: 181 VGMATDIPPHNVRELANACAMLLDNSKAELSDVLEHVNGPDYPTEAEIITPKSDIQKLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +        +  +V+T +P+Q   ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVY-----MEENGDVVITALPHQASGAKILEQIAAQMQAKKLPMVSDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D   LM+ +F  +D+E  + +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVITPRSNRIDVTQLMQHLFATTDLEKNYRVNLNMIGLDGRPQVKDLRTILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R++ + RR  +R+  +  R+ IL+GLLIA+LNIDE+I IIR  DKPKP +++RF 
Sbjct: 356 EWLQYRKDTVTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYDKPKPELMARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK E D L  E++K+  LL S ++    I  EI   
Sbjct: 416 LSDTQAEAILELKLRHLAKLEEMKIKGEQDELAEERDKLQQLLGSDRRLKTLIKKEILAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   A   + ++  +  E +TVV+S +GW R  K H +D   
Sbjct: 476 AEKYGD-----DRRSPIVERGEAKALSEKEL-VPAESVTVVLSEKGWARCAKGHDIDAEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+   +    +    + + + G+ ++  A  L S R  GE +     +   +  
Sbjct: 530 LSYKAGDAYLSSAEGKSNQPAVFMDSSGRTFSCDAHGLPSARSQGEPLTGRFSIVGGESF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               +     K LV S  G  F+    ++++  + GK +L + +  K+     VT    D
Sbjct: 590 QHVIMAQDESKFLVGSDAGYGFVGTFKDMVSKNKAGKAYLSLPTAAKVMKPTPVTNPDSD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
               +    ++L+F +  +P + +GKG +L +              V+          + 
Sbjct: 650 WCLSISNEGRMLMFPLRDLPSLGKGKGNKLINIPSAKSQSREEYVKVLAVVPDGAAIKVG 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+   + +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRNMTLTADDLTHYQGERGRRGNKLPRGLQRVDTV 746


>gi|71894333|ref|YP_278441.1| DNA gyrase subunit A [Mycoplasma synoviae 53]
 gi|71851121|gb|AAZ43730.1| DNA gyrase subunit A [Mycoplasma synoviae 53]
          Length = 865

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 244/761 (32%), Positives = 407/761 (53%), Gaps = 18/761 (2%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S       E +  V++   +E  +L YA+S +  RAIPD RDG KPVHRRI++ MSE+G+
Sbjct: 54  SKLIDEPTEGLTPVAIHDEVETSFLDYAMSVLVSRAIPDARDGLKPVHRRILYDMSELGM 113

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             G  +KKSARIVG+V+GK HPHGD SVY+++VRLAQ F  RYPL+ G GNFG+IDGD  
Sbjct: 114 TPGTQYKKSARIVGDVLGKYHPHGDSSVYNAMVRLAQDFSMRYPLVDGHGNFGSIDGDEP 173

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           A+ RYTEARM +++  +L+G+ ++ VDF D Y+  + EP V PS+FPNLL +G+ GIAVG
Sbjct: 174 ASMRYTEARMAKISTELLEGIKKNTVDFVDNYDSTEKEPAVLPSRFPNLLVSGSIGIAVG 233

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MATSIP HN++E  +A +A   N +I++E+LL+YI GPDFPTGG+I+   + I+E+Y+ G
Sbjct: 234 MATSIPPHNLKETIDAVIAYARNKDITVEELLQYIKGPDFPTGGVIL-GTKGILEAYKTG 292

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +R+ + + ++    + I++T+IPY ++KS ++E I++L     +  + D+RDES 
Sbjct: 293 RGQIPLRSEYEIVQLKNEKFRIIITKIPYNIRKSAIVESISKLDKENAVEGISDLRDESN 352

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            D   ++    +  +P++++  +F  S + T+F +NM  L     P+++ L  +L  +L 
Sbjct: 353 RDGIRIVIDIKKGFNPEVVLNKLFKKSSLLTKFSVNMVALVNT-QPKLLTLKDVLDVYLE 411

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSL 423
           H++EVL R  +F ++     + IL+GLL+A  NID+++A+I++    +     ++ ++SL
Sbjct: 412 HQKEVLTRELNFDLKKAQDSIHILEGLLVATNNIDDVVALIKSSSSDEVASKKLIEKYSL 471

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AILN+RL  L  L   ++ +E++ L  E ++I S+L+S ++  N +  ++ ++K
Sbjct: 472 SEEQAKAILNMRLGRLTGLSYSKMTNEIEELRKEIQRITSILDSEQELVNNVIADLEKIK 531

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           E +  S       +    ++       +   +       V   N           +  + 
Sbjct: 532 EKYGDSRKTSIDASASSSINEEQLIPRKDIVITATVDGFVKRVNLEEYNLQNRGGMGSTG 591

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE----AIQLLIDLNH 598
           +    GD++   +  +T   + L S  GK Y L A  +       +    A  + ++   
Sbjct: 592 MKTWSGDAILSIIQTNTHVDLFLFSNLGKVYKLRAYKIQEADKKSKGNSFANLVELNKEL 651

Query: 599 NQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-EEKMKLVV 654
           N+ I+     D   S   LL V+ KG                G    K+   E+++K V+
Sbjct: 652 NEKIIRILPVDSYESNLHLLTVTKKGIVKKTALDNFKKVRSNGIKAFKLKDEEDELKDVI 711

Query: 655 KVTGDHVAVVGENRK-LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
            VT   + +V  N K ++ F   +I   +R   GV+     DG           EG   +
Sbjct: 712 LVTNSDLVLVANNHKNVVKFEASKIRSQARNSIGVQGMKL-DGKYEVQSISSSKEGEFVL 770

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 + +  +     L  R   G        ++G  + +
Sbjct: 771 TIGEFGFGKLTDHKEYSLTNRNAKGKTSINP-AKAGNLVFA 810



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 4/112 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
           + L+   ++ +         +L +   G   + +  E     R   GKT +  +    + 
Sbjct: 749 MKLDGKYEVQSISSSKEGEFVLTIGEFGFGKLTDHKEYSLTNRNAKGKTSINPAKAGNLV 808

Query: 652 LVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
               V   D + ++      +   +DQ+   SR  KGVR+    +G     +
Sbjct: 809 FAKFVNPTDELLIITAQGNTIRTQLDQVSVFSRNSKGVRIIKLNEGDKIISV 860



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 50/145 (34%), Gaps = 3/145 (2%)

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                 VV      IRS   +S+ +  +       ++    +   + +L +   G     
Sbjct: 722 ANNHKNVVKFEASKIRSQARNSIGVQGMKLDGKYEVQSISSSKEGEFVLTIGEFGFGKLT 781

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIA 633
                     + +    +        +   FV + T +LL+++++GN    +     + +
Sbjct: 782 DHKEYSLTNRNAKGKTSINPAKAGNLVFAKFV-NPTDELLIITAQGNTIRTQLDQVSVFS 840

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG 658
              KG   +K++  +K+  V  +  
Sbjct: 841 RNSKGVRIIKLNEGDKIISVEVIKN 865


>gi|326329137|ref|ZP_08195465.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1]
 gi|325953024|gb|EGD45036.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1]
          Length = 899

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 220/799 (27%), Positives = 373/799 (46%), Gaps = 71/799 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V L+ +++  Y+ YA++ I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 17  RIETVELQSSMQASYIDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGFSKC 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+G  HPHGD ++YD+LVRLAQP+V RYPLI GQGNFG+   D AAA RYTE R
Sbjct: 77  ARVVGEVMGNYHPHGDSAIYDTLVRLAQPWVLRYPLIHGQGNFGSPGNDPAAAMRYTECR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ + ED VDF   Y+    EP + PS+FPNLL NG++GIAVGMAT+IP HN
Sbjct: 137 MAPLALEMVRDITEDTVDFGPNYDGRSQEPSILPSRFPNLLVNGSAGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   +++P+ + E+L +     + GPDFP G  ++  RE I ++YR GRG   
Sbjct: 197 LREVASGAKWALEHPDATREELQDALIERVKGPDFPNGA-LIVGREGIEQAYRTGRGSIT 255

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
            RA   V+E  +G   +V+TE+PY V    L +KIA+L    ++  + D++D  S+   +
Sbjct: 256 QRAVIDVDEDNKGRTTLVITELPYMVNPDNLAQKIADLADTGKVQGIADVKDNTSSRTGQ 315

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ ++   ++++T F  NM  L    VP+ + +D  +  W+ H+ +
Sbjct: 316 QLVVVLKRDAVARVVLNNLLKHTELQTNFSANMLALVD-GVPRTLSIDQFISNWVEHQID 374

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQ 427
           V+ RR++FR++  +    I +GL+ A   +D +IA+IR+  +             + E Q
Sbjct: 375 VIRRRTAFRLRKAEEDAHIWRGLVKALDQLDAVIALIRSSPEVDDARQGLIRLLEIDEIQ 434

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL+++LR L  LE  +I   L  L      ++ +L +  +Q   +  E+ E+   + 
Sbjct: 435 ANAILDMQLRRLAALERQKIIDRLAELELIIADLEDILANVARQRQIVGDELDEIVAKYG 494

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT       AD     + +I  E + V I+  G+ +          K     
Sbjct: 495 D-----DRRTQII---AADGDLSMEDLIPDEELVVSITRGGYAKRTLANEYRTQKRGGKG 546

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +     +  D ++  +       +L  +T G+ Y + A NL       +   +  L+   
Sbjct: 547 VRGATLRGDDVVEHFIATTNHHWLLFFTTAGRVYRIKAYNLPEAARDAKGGHVAGLLSFQ 606

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLV 653
            ++ I        Y+    L++ +  G        +  +  + G   +     ++++   
Sbjct: 607 PDESIAQVLAIRDYEQAPYLVLATRSGLIKKTRLGDYNSPRQAGVIAINFREDDDELIGA 666

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICE-- 707
             V   D + +V    + + F  D   +  M R   GV    ++DG     +     E  
Sbjct: 667 ELVNSEDDILLVSRKGQAIRFRADDNQLRPMGRATSGVTGMKFRDGDSLLSMSVIRAEHV 726

Query: 708 --------------------------------GLTWIDSAGRSYNRSENDLLGWLGKRGG 735
                                                      + +        L  RGG
Sbjct: 727 AAEIAAGLSEANEDTADVAAPVSGAESPDQVKEQFVFTITDGGFAKRTKISEYRLQSRGG 786

Query: 736 VGSLVPKG-FPRSGKFLSS 753
           +G           G  + +
Sbjct: 787 LGIKTMALANADRGGLVGA 805



 Score = 68.3 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEK--MKLV-VKVTGDHVAVVG 665
              +  ++  G A   + SE    +R G     + +++ ++  +    + V GD V  + 
Sbjct: 759 EQFVFTITDGGFAKRTKISEYRLQSRGGLGIKTMALANADRGGLVGAFIVVDGDEVLSIT 818

Query: 666 ENRKLLIFSI-DQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            + +++   I        R  +GV+  S K G    V+ 
Sbjct: 819 ASGQVVRSPINSDFRATGRSTQGVKFVSPKKGDSVAVVA 857


>gi|319942537|ref|ZP_08016847.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B]
 gi|319803940|gb|EFW00858.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B]
          Length = 970

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 245/794 (30%), Positives = 378/794 (47%), Gaps = 55/794 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S   +   +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G  +
Sbjct: 65  SGDSIANELLPVSLETEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKEIGNVW 124

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            +  KK+AR+VGEV+GK HPHGD + Y ++VR+AQ F  RYPLI GQGNFG+IDGDSAAA
Sbjct: 125 SSPTKKAARVVGEVLGKFHPHGDSAAYQTIVRMAQDFSMRYPLIYGQGNFGSIDGDSAAA 184

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE ++ ++AE +L  + ED VDF   ++  + EPVV P++ P LL NG+SGIAVGMA
Sbjct: 185 MRYTEVKLMKIAEEMLADLHEDTVDFVPNFDNSEVEPVVLPTRLPELLVNGSSGIAVGMA 244

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN++E  +A +  +++P+ S++ L+  I  PDFPTGG IV     + E YR GRG
Sbjct: 245 TNIPPHNLRETIDACVHALEHPDCSVDDLIALISAPDFPTGG-IVYGLSGVYEGYRTGRG 303

Query: 249 GFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
              +RAR  +EE GR      IVV EIPY V K  L E++ EL   K++  + ++RDES 
Sbjct: 304 RVIMRARTHLEEFGRDHSRTRIVVDEIPYMVNKRVLYERMHELWRDKKLDGISEMRDEST 363

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +RI      +   P++++ ++F  + M+  F +NM  L     P ++ L  ++  +L 
Sbjct: 364 RQIRIA-IDLKQGAMPEVVLNNLFKNTQMQESFGMNMVALVD-GQPMLLNLKQMVVYFLE 421

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---- 422
           HRREV+ RR+ FR++       IL G  IA  NIDE I +IR     +    S       
Sbjct: 422 HRREVVTRRTIFRLKKSRGAGHILAGQAIALANIDEFIRLIRAAKTVEEAQQSLMGRGWP 481

Query: 423 ------------------------------------LTENQVDAILNLRLRSLRKLEEYQ 446
                                               LT+ QVD IL + LR L  LE  +
Sbjct: 482 LGFAAEITRRAAEYGKDADPEGLDPRRGLQPDGLYYLTKVQVDNILAMNLRRLTGLEREK 541

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I ++    +     +  +L+  ++    I  E+   +E +          +     ++ D
Sbjct: 542 ILADYAATMERIFDLIDILHKPERVTAIIKEELLACREAYGDERRSTIDLSEDTNFNKRD 601

Query: 507 KATLQQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
               +  ++       V S      +         +       D ++    A+T D IL 
Sbjct: 602 LIPRRDMVVSLTRDGFVKSQELADYNAQSRGGKGRNLQATTRDDVIEAFFLANTHDIILC 661

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            ST G+ Y +   +L        G  I  L+ L  N+ I        +     + + + +
Sbjct: 662 FSTAGQVYAIDVFDLPEGKANSRGRPIVNLLPLEENEKISFILPIQEFSEDRYMFLATDR 721

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679
           G       S   +  R G     +  +EK+  V   +G D V ++ +N + + F    I 
Sbjct: 722 GTVRRTPLSAFSSARR-GIRATNL-GDEKLVGVTITSGDDDVFLLADNGRCVHFKESTIR 779

Query: 680 EMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R   GVR    K       +         ++ +    + +        L  RGG G 
Sbjct: 780 VMGRTAHGVRGMRVKADESVVALASTNDMTQAFLIATEHGFGKRTALAAYPLRNRGGKGV 839

Query: 739 LVPKGFPRSGKFLS 752
           +  +   ++G  +S
Sbjct: 840 IAIRVIEKNGAPVS 853



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 7/146 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSS 619
           D + LL+ +G+        +             + +  ++ +V     +  T   L+ + 
Sbjct: 759 DDVFLLADNGRCVHFKESTIRVMGRTA-HGVRGMRVKADESVVALASTNDMTQAFLIATE 817

Query: 620 KGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
            G       +      R GK  + +     +   +  V+    D + ++    K++    
Sbjct: 818 HGFGKRTALAAYPLRNRGGKGVIAIRVIEKNGAPVSGVIVKPEDDIMLLSTGGKVVRTRA 877

Query: 676 DQIPEMSRGK-GVRLQSYKDGGISDV 700
            ++PE  R   G  L    D  ++ V
Sbjct: 878 GEVPERGRNTVGNILIRMPDDTLAAV 903


>gi|197104862|ref|YP_002130239.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1]
 gi|196478282|gb|ACG77810.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1]
          Length = 932

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 244/751 (32%), Positives = 380/751 (50%), Gaps = 63/751 (8%)

Query: 6   ISNSN-TLVEEN---VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++   T  ++    V  +++   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ +M
Sbjct: 1   MTDETHTPPDDRRGGVAPIAIEDELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +E G      + KSAR+VG+V+GK HPHGD ++YD++VR+AQPF     LI GQGNFG++
Sbjct: 61  NEQGHTPDRGYVKSARVVGDVMGKYHPHGDVAIYDTMVRMAQPFSMNLLLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           D D  AA RYTE+RMT+ A  IL  +D+D VDF+D Y+  + EPVV PS+ PNLL NG  
Sbjct: 121 DNDPPAAMRYTESRMTRAAMAILADLDKDTVDFKDNYDGSEQEPVVLPSRIPNLLVNGAG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A LA IDNPEI +++LL+ + GPDFPTGG I+  R    +
Sbjct: 181 GIAVGMATNIPPHNLGEVVDACLAYIDNPEIGLDELLDIVPGPDFPTGGEII-GRSGARQ 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +   GRG   +R +  +EEV +    IV+T IPYQV K+ L+E+IAEL+  KRI  + D+
Sbjct: 240 ALMTGRGSVIMRGKATIEEVRKEREAIVITAIPYQVNKAALVERIAELVREKRIEGVADL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    R    ++++  ++  + +++ F +NM  L+    P+ M L  ++
Sbjct: 300 RDESDRDGMRVVVEMKRDASAEVILNQLYRYTPLQSSFGVNMLALN-RGRPEQMGLREMV 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
             ++  R EV+ RR+ F +     R  +L GL IA  NIDE I IIR+   P        
Sbjct: 359 TAFVDFREEVVVRRTKFELSKARDRGHVLVGLAIAVANIDEFIHIIRSSKDPTEARERLV 418

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                  +  ++  LT+ Q  AIL L L  L  L   +I  E  
Sbjct: 419 AKDWPAGDMLPLVELIADPRTLVIDGNKIRLTDEQARAILALTLSRLTGLGRDEIFGEAR 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            L         +L S ++    +  E+ +V+E F+       RRT   E    D     +
Sbjct: 479 ELAGVIRGHLEILASRERVMAIVREELVQVREQFAVP-----RRTEIVE---GDADVEDE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + + +++ G+++                 S +  KE D++     A+T   +L
Sbjct: 531 DLIAREEMVITVTHGGYVKRTPLATYRTQHRGGKGRSGMATKEEDAVTRVFSANTHTPML 590

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ GKAY L    L   +    G+A   L+ +   + I +               ++ 
Sbjct: 591 FFSSGGKAYKLKVWRLPLGTPTSRGKAFVNLLPIEPGESITSILPLPEDEATWDQYDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFS 674
            +  GN    + S+ +   R GK  +K+   + +  V       + V +     + + F+
Sbjct: 651 ATRSGNVRRNKLSDFVDIRRNGKIAMKLDEGDAIIGVGVCNAGQNDVLLTTALGRCIRFA 710

Query: 675 IDQIPEM-SR-GKGVRLQSYKDGGISDVICF 703
            +++     R   GVR     +G     +  
Sbjct: 711 TEEVRVFAGRDSTGVRGIRLAEGDSVISMAI 741



 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 6/118 (5%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVA 662
           +  +   +L VS++G        E     R G+  L         K+     V  GD + 
Sbjct: 799 MGAAEEIILTVSTEGYGKRTSAYEFRRTGRGGQGLLAQDLTKRGGKLAGSFPVDEGDEIL 858

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +V +  +L+   + Q+    R  +GV + +   D  +  V       G   ++     
Sbjct: 859 LVSDQGQLIRIPVRQVRLAGRNTQGVIIFRKSADEHVVSVERLAEPAGDDEVEDGDIG 916



 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 14/48 (29%)

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +  +   Y +  +        RGG G L      R GK   S
Sbjct: 801 AAEEIILTVSTEGYGKRTSAYEFRRTGRGGQGLLAQDLTKRGGKLAGS 848



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 2/86 (2%)

Query: 659 DHVAV-VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           + + + V         S  +     RG +G+  Q     G      F + EG   +  + 
Sbjct: 803 EEIILTVSTEGYGKRTSAYEFRRTGRGGQGLLAQDLTKRGGKLAGSFPVDEGDEILLVSD 862

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPK 742
           +            L  R   G ++ +
Sbjct: 863 QGQLIRIPVRQVRLAGRNTQGVIIFR 888



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 25/99 (25%), Gaps = 14/99 (14%)

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEM----SRGKGVRLQSYKDGGISDVIC 702
           ++  V++  G    +    R + I   +  Q+ E      R          +G       
Sbjct: 479 ELAGVIR--GHLEILASRERVMAIVREELVQVREQFAVPRRT------EIVEGDADVEDE 530

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
             I      I      Y +           RGG G    
Sbjct: 531 DLIAREEMVITVTHGGYVKRTPLATYRTQHRGGKGRSGM 569


>gi|126726444|ref|ZP_01742285.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150]
 gi|126704307|gb|EBA03399.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150]
          Length = 924

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 256/830 (30%), Positives = 393/830 (47%), Gaps = 106/830 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     +++KSAR 
Sbjct: 25  QVSIVDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHEKSYRKSARA 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM +
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            +  +L  +++D VDF+D Y+ +D EP V PS+FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 PSASLLADIEKDTVDFQDNYDGKDREPSVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I +A LALI NP+++ E+L++Y+  PDFPTGGII+  R    ++Y  GRG   +RA+  V
Sbjct: 205 IIDATLALITNPDLTSEELIQYVPAPDFPTGGIIL-GRTGARKAYIEGRGSVVIRAKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ LIEKIAE +  KRI  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRYAIVLDEIPYQVNKASLIEKIAETVRDKRIDGISHVQDESDRNGVRVVVELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ G  P+ + L   L  +L  R EV+ RR++F
Sbjct: 324 DATAEVVLNQLFRFTPMQTSFGCNMLALN-GGRPEQLTLRRFLTSFLDFREEVVARRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------------------- 412
            ++    R  +L GL +A  N+DEI+A IR                              
Sbjct: 383 ELRKARERSHVLCGLAVAVSNVDEIVATIRTSADPAEARAKLMTRRWPATDILEYIALID 442

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               +      ++L+E Q  AIL LRL+ L  L   ++  EL  L A   +   +L S +
Sbjct: 443 DPTHRANDDGTYNLSETQARAILELRLQRLTALGVSEVTDELQVLAANIREYLEILASRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E++EVK+ F+       RR+   + S   +    + +IE E + V ++  G+
Sbjct: 503 RIMGIITDELQEVKDKFAVP-----RRSEIIDWSGDME---DEDLIESEDMVVTVTATGY 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          K     LS +  KE D +     A+T  ++L  +T G  Y L    L 
Sbjct: 555 IKRTPLADFRAQKRGGKGLSGMSTKEDDVVTNLFVANTHTQLLFFTTAGMVYKLKTWRLP 614

Query: 582 S--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     +      D         +++  ++ G+      S+   
Sbjct: 615 QGGRTAKGKAIINILPIPQGVSVAAVMPVDRDEDDWGDLQIVFATTAGDVRRNALSDFTN 674

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRLQ 690
             R GK  +K+    ++         D V +V +  + + F    +     R   GVR  
Sbjct: 675 VMRNGKIAMKLPEGVELVNARICSEDDDVMLVTDAGRAIRFRTTDVRVFKGRDSTGVRGI 734

Query: 691 SYKDGGISDVICFK---------------------------------------------- 704
              +G     +                                                 
Sbjct: 735 RLAEGRSVVSMAVIRHFEASAEDRAAYLKMRRAVEGMSDDVDGEDDEVAASDTFTMEQYE 794

Query: 705 --ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                    +  +     +  +     +  RGG G        R G  ++
Sbjct: 795 EMRAAEDLILTISNGGSGKLSSSHDYPVRGRGGQGVAAMDKAMRGGPLVA 844



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 10/117 (8%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L +S+ G+  +    +     R G+    +        +     V   D + +  
Sbjct: 799 AEDLILTISNGGSGKLSSSHDYPVRGRGGQGVAAMDKAMRGGPLVACFPVEIEDQIMLAT 858

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQ-SYKDGGISDVICFKI----CEGLTWIDSAG 716
              + +   I  I   SR   GV++  + K   +  V          E    I   G
Sbjct: 859 STGQSIRCPIKGISFRSRSAGGVKVFDTAKKETVVSVALIADQGDEAEDAEIISETG 915


>gi|257067233|ref|YP_003153488.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810]
 gi|256558051|gb|ACU83898.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810]
          Length = 943

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 223/772 (28%), Positives = 374/772 (48%), Gaps = 45/772 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  + L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM + G     +F K
Sbjct: 68  DRITQIDLNHEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRIVYAMFDGGYRPDRSFSK 127

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A++VGEV+G  HPHGD ++YD++VRL QP+  RYPLI GQGNFG+   D AAA RYTE 
Sbjct: 128 CAKVVGEVMGNYHPHGDSAIYDAMVRLVQPWSMRYPLILGQGNFGSAGDDGAAAPRYTEC 187

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +++D VD +  Y+    EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 188 KMAPLALELVRDIEQDTVDMQGNYDNTVDEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 247

Query: 195 NVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A   L+ N E +  +     L+ I GPDFP+G  IV     I ++YR GRG  
Sbjct: 248 NLREVADAVQWLLKNHEATKPELLEACLQRIKGPDFPSGATIV-GTSGIEDAYRTGRGSI 306

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
             RA    EE+  G   +VVTE+PYQV    L  KIAE++   +I  + DI DE++    
Sbjct: 307 TQRAVVSTEEIN-GRMSLVVTELPYQVNPDTLARKIAEMVKLGKIQGIADITDETSGRTG 365

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  + ++  F  NM  L    VP+ + +D  ++EW  H+ 
Sbjct: 366 QRLVITLKRDAVAKVVLNNLYKHTQLQENFSANMLAL-ANGVPRTLSIDSFVREWTKHQI 424

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTEN 426
           +V+ RR+ FR++  + ++ I +G L A   +DE+IA+IR                 + E 
Sbjct: 425 DVIVRRTKFRLRKAEEQIHIFRGYLKALDALDEVIALIRRSPDVDEARTGLMDLLEIDEI 484

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL ++LR L  LE  +I  E D L A  E+  ++L   ++Q + ++ E+ E+ + F
Sbjct: 485 QANAILAMQLRRLAALERQKIIEEHDRLQALIEEYTAILADPQRQRDIVSEELAEIVDRF 544

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT     +   +    + +I +E + V I+  G+++          K    
Sbjct: 545 GD-----DRRTEILPFAGDME---MEDLIPEEDMVVTITRGGYVKRTREDQYRAQKRGGK 596

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D ++      T   +L  +  G+ Y      L       +   +  L+  
Sbjct: 597 GVRGASLREDDVVEHFFTTTTHRWLLFFTNQGRVYRAKGYELPEAPRDAKGQHVANLMAF 656

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------- 646
             +++I +      Y+    L++ +  G           ++   G   + +         
Sbjct: 657 QPDENIASVLAIDSYEDAQHLVLATESGLVKKTPMPAFDSSRTGGIIAINLRDIDGPEGP 716

Query: 647 -EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVI 701
             +++     V   D + +V  N + + F  D   +    R   GV    ++       +
Sbjct: 717 QPDRVISARAVNSDDEILLVSRNGQSVRFPADDGTLRPTGRATSGVTGMKFRHQDTLLAM 776

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +    I      + +        L  RGG+G  V K     G  + +
Sbjct: 777 DVIRPDSF-VITVTDGGFAKRTTVDEYRLQGRGGLGIRVAKLPDDRGHLVGA 827



 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 3/137 (2%)

Query: 520 ITVVISNRGWIRSLKSH-SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            +V               +  ++ + F+  D+L           ++ ++  G A      
Sbjct: 741 QSVRFPADDGTLRPTGRATSGVTGMKFRHQDTLLAMDVIRPDSFVITVTDGGFAKRTTVD 800

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK- 637
                   G  I++    +    +V A V + T +LLVV  +G     + +E+ A  R  
Sbjct: 801 EYRLQGRGGLGIRVAKLPDDRGHLVGAAVVEETDELLVVMERGRVVRSKVAEVPAKGRTT 860

Query: 638 -GKTFLKVSSEEKMKLV 653
            G  F K    +++ LV
Sbjct: 861 MGVVFAKPDKGDRILLV 877


>gi|332139905|ref|YP_004425643.1| DNA topoisomerase IV subunit A [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549927|gb|AEA96645.1| DNA topoisomerase IV subunit A [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 761

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 262/757 (34%), Positives = 426/757 (56%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMS++G
Sbjct: 1   MSDEIIINRDGVEQLPLRRFTEDAYLNYSMYVIMDRALPHISDGLKPVQRRIIYAMSDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA++++ AE++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEAKLSRFAEVLLNELGQGTVDWVPNFDGTLEEPSVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DN +  +  +L ++ GPD+PT   I+  +  I + Y 
Sbjct: 181 VGMATDIPPHNVRELANACAMLLDNSKAELSDVLAHVNGPDYPTEAEIITPKADIQKLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +        S  +V+T +P+Q   ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVY-----SEESGDVVITALPHQASGAKILEQIAAQMQAKKLPMVSDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D   LM+ +F  +D+E  + +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVITPRSNRVDVTQLMQHLFATTDLEKNYRVNLNMIGLDGRPQVKDLRTILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R++ + RR  +R+  +  R+ IL+GLLIA+LNIDE+I IIR  DKPKP ++SRF 
Sbjct: 356 EWLQYRKDTVTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYDKPKPELMSRFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK E D L AE++K+  LL S ++    I  EI   
Sbjct: 416 LSDKQAEAILELKLRHLAKLEEMKIKGEQDELAAERDKLQQLLGSDRRLKTLIKKEILAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   A   + ++  +  E +TVV+S +GW R  K H +D   
Sbjct: 476 AEKYGD-----DRRSPIVERGEAKALSEKEL-VPAESVTVVLSEKGWARCAKGHDIDAEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+ ++  A  L S R  GE +     +   +  
Sbjct: 530 LSYKAGDGYLSSAEGKSNQPAVFMDSSGRTFSCDAHGLPSARSQGEPLTGRFSIVGGESF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
             A +     K LV S  G  F+    ++++  + GK +L + +  K+     VT    D
Sbjct: 590 QHAIMAQDDSKFLVGSDAGYGFVGTFKDMVSKNKAGKAYLSLPTAAKVMKPTPVTNPDTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
               +    ++L+F +  +P + +GKG +L +              ++          + 
Sbjct: 650 WCLSISNEGRMLMFPLRDLPSLGKGKGNKLINIPSAKSQSREEYVKILTVVPDGTAIKVG 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+   S  DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRNMTLSAEDLTHYQGERGRRGNKLPRGLQRVDTV 746


>gi|148361319|ref|YP_001252526.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Corby]
 gi|148283092|gb|ABQ57180.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Corby]
          Length = 751

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 278/746 (37%), Positives = 428/746 (57%), Gaps = 25/746 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E  +   L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +
Sbjct: 7   MNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVGMA+ I
Sbjct: 127 TEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y  G G  +
Sbjct: 187 LPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYESGNGSIK 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA +  E+       IV+T +PYQV  +R++E+IA  +  K++P++ED+RDES  +   
Sbjct: 247 MRAIYAQEK-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL EWL  R 
Sbjct: 302 RLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILTEWLEFRL 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  ++PK  ++SRF+LTE Q +
Sbjct: 362 TTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFNLTERQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + ++ F   
Sbjct: 422 AILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHSLLKELVKEEITKDRDEFGDP 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+         +A  ++ ++  EPITVV+S  GW+R+ K H VD   L +K GD
Sbjct: 482 -----RRSPII-TREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGKELSYKAGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K    A T  ++L    +GK Y+LP   L S RG GE +   ++             +
Sbjct: 536 EFKAQTLARTNQQVLFFDGEGKVYSLPGHALPSARGQGEPLTGKLNPAEGVLFEAIVGGE 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGE 666
              K+L+ +  G  FI +  ++    R GK  +K+S    +     +       VA    
Sbjct: 596 PEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATN 655

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSY 719
             +LLIFS++++PE+SRGKG +L S        ++  I D+      + LT   +  R +
Sbjct: 656 VGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDSLTV-HAGKRHF 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
                DL  + G+RG  G+ +P+G  
Sbjct: 715 TLKGEDLTHYKGERGRRGNRLPRGLQ 740


>gi|312116030|ref|YP_004013626.1| DNA gyrase subunit alpha [Rhodomicrobium vannielii ATCC 17100]
 gi|311221159|gb|ADP72527.1| DNA gyrase, A subunit [Rhodomicrobium vannielii ATCC 17100]
          Length = 941

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 244/750 (32%), Positives = 384/750 (51%), Gaps = 57/750 (7%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +  N       +++ + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ +
Sbjct: 1   MADPSDGNKGDRGAGDIRPILITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE G  +   ++KSARIVG+VIGK HPHGDQSVYD+LVR+ Q F  R PLI GQGNFG+
Sbjct: 61  MSENGYSWNKPYRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMRVPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTE R+ ++++ +L  ++ D VDF+D Y+  + EP V P++FPNLL NG 
Sbjct: 121 VDGDPPAAMRYTEVRLQKISDSLLNDLENDTVDFQDNYDNSEREPTVLPARFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A LA ++NP +SIE+L+E+I GPDFPTGG ++  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACLAFLENPALSIEQLMEHIPGPDFPTGG-VIMGRAGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   VR +  VE + +    ++VTEIPYQV K+ L E+IAEL+  KR+  + D
Sbjct: 240 AAYLKGRGSVVVRGKVHVETIRKDRDALIVTEIPYQVNKATLQERIAELVREKRVEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES      V+    R   PD+++  ++  + +++ F  NM  L+    P+   L   
Sbjct: 300 VRDESDRSGYRVVIELKRDAMPDVVLNQLYRFTSLQSVFAANMVALNS-GRPEQHTLLDF 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------- 413
           ++ +   R  V+ RR+ F +     R  +L GL  A  NIDE+I +IR+   P       
Sbjct: 359 IQAFTQFRETVITRRTKFLLGKARDRAHVLVGLATAVANIDEVIKLIRSAPDPASAREAL 418

Query: 414 ----------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                 +    + + L+ +Q  AIL LRL+ L  L   +I  EL
Sbjct: 419 MSRDWPADDIAPLLLLIEDPRSRIHEGNVYRLSIDQAKAILELRLQRLTALGRDEIADEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L  +     ++L+S  +  + +  E+  +KE F+       RRT   +V         
Sbjct: 479 KALADKIRDYLNILSSRARVISIVRDELTAIKEEFATP-----RRTEILDVEGE---VDD 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I+KE + V +S+RG+I+          +      S +  ++ D +     A+T   +
Sbjct: 531 EDLIQKEDMVVTVSHRGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPV 590

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-----KLLV 616
           L LS+ G AY +    L   + +  G+A+  L+ L  ++ I +              +L 
Sbjct: 591 LFLSSRGMAYKMKVWRLPLSAPQARGKALINLLPLQQDETITSILPLPEERDESGVFILF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI 675
            +  GN    E ++     + GK  +K+   + +         D + +   N + + F +
Sbjct: 651 ATRSGNVRRNELADFAEVRQNGKIAMKLDPGDDIAGAQLCRETDDILLTTANGQAIRFPV 710

Query: 676 DQIPE-MSR-GKGVRLQSYKDGGISDVICF 703
             +     R   GVR     +      +  
Sbjct: 711 TDVRIFKGRESTGVRGVRLDEDDTVISLAI 740



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVTG-DHVA 662
           +  +   +L +S +G        E   + R  KG   + V+    ++     V   D + 
Sbjct: 813 MGAAEQYVLTMSERGFGKRTSSYEYRTSGRGGKGIIAMAVNERNGRLIASFPVEDTDQIM 872

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V    KL+   I+ I    R  +GV +            
Sbjct: 873 LVTNGGKLIRCPIEGISITGRSAQGVTIFRTDQDERVVSA 912



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 18/48 (37%)

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +  + R + +  +        RGG G +      R+G+ ++S
Sbjct: 815 AAEQYVLTMSERGFGKRTSSYEYRTSGRGGKGIIAMAVNERNGRLIAS 862



 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 2/97 (2%)

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             +V  + E       S  +     RG KG+   +  +     +  F + +    +    
Sbjct: 817 EQYVLTMSERGFGKRTSSYEYRTSGRGGKGIIAMAVNERNGRLIASFPVEDTDQIMLVTN 876

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                        +  R   G  + +   +  + +S+
Sbjct: 877 GGKLIRCPIEGISITGRSAQGVTIFR-TDQDERVVSA 912



 Score = 41.7 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +G + D    +  +    +  + R Y +          +RGG G        R   F+
Sbjct: 525 EGEVDDEDLIQKED--MVVTVSHRGYIKRVPLSTYRAQRRGGKGRSGM--TTRDEDFV 578


>gi|254361259|ref|ZP_04977402.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Mannheimia haemolytica
           PHL213]
 gi|153092755|gb|EDN73798.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Mannheimia haemolytica
           PHL213]
          Length = 748

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 263/751 (35%), Positives = 439/751 (58%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +  +  E ++ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   TTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGM
Sbjct: 122 AMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+ +A++ L+DNP+ +++ +L  + GPD+PT   I+  +  I   Y  GR
Sbjct: 182 ATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV++ +P+Q   S++IE++A  +  K++P+++DIRDES  
Sbjct: 242 GSIKMRAVWKKEEGE-----IVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RR  + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+LT+
Sbjct: 357 SFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKAELMARFNLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+Q+++E   L  E++++  +L S ++  + I  EI+   + 
Sbjct: 417 VQAEAILNLRLRHLAKLEEHQLQAEKSELEKERDELQLILGSERRLNSLIKKEIQADAKA 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E + + KA  +  +   E +TV++S +GW+R  K H +D+ AL  
Sbjct: 477 FASP-----RRSPLVERAES-KAIAESDLTPTEDVTVILSEKGWVRCAKGHDIDVQALSH 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD         +   ++ L + G+AY L   +L S R  GE +   I L     +   
Sbjct: 531 RAGDGYLAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGAVVQQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VA 662
            +     K+L+ S  G  FI   +++++  + GK  + ++   K+     +  D    + 
Sbjct: 591 LMASPETKVLMASDSGYGFICTFADLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLV 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICE-GLTWIDSAG 716
            +    ++L+F + ++P++S+GKG ++ +      K G         I         S  
Sbjct: 651 AMSNVGRMLVFPVSELPQLSKGKGNKIINISAAAAKSGDEYLARLLVIKPTNSLVFVSGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +D+  + G+R   GS + +G   +
Sbjct: 711 RKITLKPSDVDNYRGERARKGSQLVRGLSTN 741


>gi|308069401|ref|YP_003871006.1| topoisomerase IV subunit A [Paenibacillus polymyxa E681]
 gi|305858680|gb|ADM70468.1| Topoisomerase IV subunit A [Paenibacillus polymyxa E681]
          Length = 820

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 218/763 (28%), Positives = 395/763 (51%), Gaps = 30/763 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E      L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G     A+
Sbjct: 3   LSEQFLPAFLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKAY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+V+G  HPHGD S+YD +VR+AQP+   + L+ G GN+G+ D D AAA RYT
Sbjct: 63  RKSAKTVGDVMGNYHPHGDSSIYDGMVRMAQPWKMSHVLVDGHGNWGSQDDDPAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +++  V F+D ++    EPVV PS++PNLL NG+SGI+ G AT IP
Sbjct: 123 EARLSPIAMEMLRDIEKRTVLFKDNFDNSAKEPVVLPSRYPNLLVNGSSGISAGFATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +H+++E+ +A++A+++ PEI +E+++ +I GPDFPTGG ++   E I ++YR G+G   +
Sbjct: 183 THSLREVIDASIAVMEKPEIELEEIMTFIKGPDFPTGG-LIMGGEGIKDAYRTGKGRIYI 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  ++ +  G   +V+TEIPYQ+ KSRL+  +  + + K++  + ++RDES  +   +
Sbjct: 242 RSKTEIQSLRGGKQQLVITEIPYQIVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++  +   +D++  +  NM  +   + P  + L  IL+ ++AH+REV+
Sbjct: 302 VVELKKEADAEGILAYLLKKTDLQVAYNFNMVAIV-NKAPHQLGLKSILEAYIAHQREVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R  + ++  + R  +L+GL+ A   +DE+IA I+        +  +   F  +E Q D
Sbjct: 361 THRIQYELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFSERQAD 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           +IL L+L  L  LE   ++ EL ++  +  +  S+L S ++  + I  E+ E++E +   
Sbjct: 421 SILTLQLYRLTNLEITTLEKELGDIQKKIAQYRSILESDRKLISLIRKELLEIREKYG-- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-----DLSALH 544
                RR+   +    +     + M+  E + + +S  G+++     S      + S+  
Sbjct: 479 ---IDRRSDI-QGEVEEIKVNLEVMVGAEDVLLTLSKDGYVKRTSMLSFTRSGGERSSSG 534

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
            KEGD +   L  +T D +L+ +  G+ + LP   +   +       I  +I L+    I
Sbjct: 535 VKEGDYVTQLLDVNTLDILLVFTQRGQYFLLPVHQVPEYKWKEPGTPIVNVIPLSKEDRI 594

Query: 603 VTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           V+     +       L+ V+ KG     E  E            KV+ ++++  V    G
Sbjct: 595 VSVIPLKNIEEIGKSLVFVTKKGQVKRTELKEYATKRSSAVAACKVAGDDEVLSVTLSEG 654

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + ++      + F   ++  M R   GV+     +G       +   +    +    
Sbjct: 655 TRDIMLITRAGMSIRFKEQEVNAMGRVSAGVKGIQLAEGDEIIAALWVEEDEGEVLVLTE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLV--PKGFPR---SG-KFLSS 753
             Y +    L      RGG G      K   R   +G + +++
Sbjct: 715 SGYGKRTLLLDYPTQGRGGKGITTFEFKEGKRVRSNGTRIVAA 757


>gi|54295818|ref|YP_128233.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Lens]
 gi|53755650|emb|CAH17152.1| DNA topoisomerase IV, A subunit [Legionella pneumophila str. Lens]
          Length = 751

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 278/746 (37%), Positives = 429/746 (57%), Gaps = 25/746 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E  +   L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +
Sbjct: 7   MNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVGMA+ I
Sbjct: 127 TEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y  G G  +
Sbjct: 187 LPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYESGNGSIK 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA +  E+       IV+T +PYQV  +R++E+IA  +  K++P++ED+RDES  +   
Sbjct: 247 MRAIYTQEK-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL EWL  R 
Sbjct: 302 RLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILTEWLEFRL 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  ++PK  ++SRF+LTE Q +
Sbjct: 362 ATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFNLTERQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + ++ F   
Sbjct: 422 AILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHFLLKELVKEEITKDRDEFGDP 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+         +A  ++ ++  EPITVV+S  GW+R+ K H VD   L +K GD
Sbjct: 482 -----RRSPII-TREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGKELSYKAGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K    A T  ++L    +GK Y+LP   L S RG GE +   ++             +
Sbjct: 536 EFKAQTLARTNQQVLFFDGEGKVYSLPGHVLPSARGQGEPLTGKLNPAEGVLFEAIVGGE 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGE 666
              K+L+ +  G  FI +  ++    R GK  +K+S +  +     +       VA    
Sbjct: 596 PEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSEKSHILPPRLIPNREQLFVACATN 655

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSY 719
             +LLIFS++++PE+SRGKG +L S        ++  I D+      + LT   +  R +
Sbjct: 656 VGRLLIFSLEELPELSRGKGNKLISIPAAKAVSREEYIVDIQVLTTNDSLTV-HAGKRHF 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
                DL  + G+RG  G+ +P+G  
Sbjct: 715 TLKGEDLTHYKGERGRRGNRLPRGLQ 740


>gi|296108660|ref|YP_003620361.1| DNA topoisomerase IV subunit A [Legionella pneumophila 2300/99
           Alcoy]
 gi|295650562|gb|ADG26409.1| DNA topoisomerase IV subunit A [Legionella pneumophila 2300/99
           Alcoy]
          Length = 751

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 278/746 (37%), Positives = 428/746 (57%), Gaps = 25/746 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E  +   L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +
Sbjct: 7   MNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVGMA+ I
Sbjct: 127 TEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y  G G  +
Sbjct: 187 LPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYESGNGSIK 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA +  E+       IV+T +PYQV  +R++E+IA  +  K++P++ED+RDES  +   
Sbjct: 247 MRAIYTQEK-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL EWL  R 
Sbjct: 302 RLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILTEWLEFRL 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  ++PK  ++SRF+LTE Q +
Sbjct: 362 TTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFNLTERQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + ++ F   
Sbjct: 422 AILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHSLLKELVKEEITKDRDEFGD- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+         +A  ++ ++  EPITVV+S  GW+R+ K H VD   L +K GD
Sbjct: 481 ----LRRSPII-TREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGKELSYKAGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K    A T  ++L    +GK Y+LP   L S RG GE +   ++             +
Sbjct: 536 EFKAQTLARTNQQVLFFDGEGKVYSLPGHALPSARGQGEPLTGKLNPAEGVLFEAIVGGE 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGE 666
              K+L+ +  G  FI +  ++    R GK  +K+S    +     +       VA    
Sbjct: 596 PEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATN 655

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSY 719
             +LLIFS++++PE+SRGKG +L S        ++  I D+      + LT   +  R +
Sbjct: 656 VGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDSLTV-HAGKRHF 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
                DL  + G+RG  G+ +P+G  
Sbjct: 715 TLKGEDLTHYKGERGRRGNRLPRGLQ 740


>gi|313141110|ref|ZP_07803303.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171]
 gi|313133620|gb|EFR51237.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171]
          Length = 888

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 224/772 (29%), Positives = 373/772 (48%), Gaps = 28/772 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +    L +  V    ++  + + YL YA+S I ERA+PD+RDG KPVHRRI++AM + G 
Sbjct: 9   NEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGGY 68

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K AR V +V+G  HPHGD ++YDSLVR+AQP+  RY L+ GQGNFG+   D  
Sbjct: 69  RPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDPP 128

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+    EP V P++FPNLLANG+SGIAVG
Sbjct: 129 AAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAVG 188

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ E     +D+PE S E+LL      I GPDFPTG  I+   + I ++
Sbjct: 189 MATNIPPHNMRELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATIL-GHKGIEQA 247

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  + D+R
Sbjct: 248 YRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADMR 306

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  +
Sbjct: 307 DETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFI 365

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMV 418
           + W+ H+ EV+ RR+ +  +  + R  IL+GLL A   IDE+I +IR+       +P ++
Sbjct: 366 RHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGREDARPKLM 425

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + + Q DAIL+++L  L  +E  +I  E + L+ +    + +L   ++Q   +  E
Sbjct: 426 EFLDIDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDILAKPERQRTIVGDE 485

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+   +           +         A     +       +  +     R+      
Sbjct: 486 LDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKRTKANEYRAQHRGGK 545

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y + A  L  G    +   +  L+  
Sbjct: 546 GIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQF 605

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I T      Y+    L++ +  G       +E  +  + G   ++++++      
Sbjct: 606 GPDETIQTVLSIPNYEVAKYLVLATRTGKVKKTALAEYDSPRQGGLIAVRLAADEETGEP 665

Query: 648 -EKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYK-DGGISDVI 701
            +++         D + +V +    L F+   DQ+  M R   GV+   ++ D  +  + 
Sbjct: 666 TDELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMGRQTAGVQGMKFRGDDELLAMD 725

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +      + +        L  R G G    +     G  + +
Sbjct: 726 VVPEDSKQDLLVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGRGSLVGA 777


>gi|290474835|ref|YP_003467715.1| DNA topoisomerase IV subunit A [Xenorhabdus bovienii SS-2004]
 gi|289174148|emb|CBJ80935.1| DNA topoisomerase IV, subunit A [Xenorhabdus bovienii SS-2004]
          Length = 751

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 285/754 (37%), Positives = 446/754 (59%), Gaps = 24/754 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+   L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SEITHDGVECQPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AEL+L  +    VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLSELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  A +A++DNP  S++ ++EYI GPD+PT   I+ S+E I + Y+ GRG
Sbjct: 182 TDIPPHNVREVVSALVAMLDNPNCSLDDVMEYIKGPDYPTEAEIITSKEDIRKIYKNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE       +V+T +P+QV  ++++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAVWSKEESN-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ PKN  +D + +M  +F+ +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPKNNRVDVEQVMNHLFVTTDLEKSYRVNLNMIGLDNRPNVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RRE +  R ++R++ + +R+ IL GLL AYL+IDE+I IIRNED+PKPV++ RF LTE 
Sbjct: 357 FRRETVRNRLNYRLEKVLKRLHILDGLLKAYLSIDEVIQIIRNEDEPKPVLMQRFELTET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++K+ ++L S ++    +  EI    E +
Sbjct: 417 QAEAILELKLRHLAKLEEVKIRGEQDGLAKERDKLQAILGSERKLSTLLKKEIIADAENY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E S A KA     ++  EPITVV+S  GW+RS K H +D + L++K
Sbjct: 477 GD-----HRRSPLKERSEA-KAMSDHDILPSEPITVVLSEMGWVRSAKGHEIDPAGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA-IQLLIDLNHNQDIVTA 605
            GDS + A    +   ++ + T G++Y++   +L S RG GE     L+ L     I   
Sbjct: 531 SGDSFRSAARGKSNQPVVFIDTTGRSYSVDPLDLPSARGQGEPLTGKLLALPAGASIEHL 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVA 662
            +     K L+ S  G  FI   S++IA  R GK  + +    K+   +++T    D + 
Sbjct: 591 LIAKEEQKFLMASDAGYGFICTFSDLIAKNRAGKALITLPENAKVMQPLEITNEQDDMLL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAG 716
            + +  ++L+F +  +P++S+GKG ++ S           +   +     +    +    
Sbjct: 651 AITKEGRMLMFPVADLPQLSKGKGNKIVSIPAAQAASGEDMLSWLLVLPVQSSITLYFGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  +  +RG  G+ +P+G  R  + 
Sbjct: 711 RKLLLRPEDLQKFRAERGRKGTSLPRGLQRVERI 744


>gi|227494194|ref|ZP_03924510.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831928|gb|EEH64311.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 873

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 232/768 (30%), Positives = 375/768 (48%), Gaps = 42/768 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V +   ++  YLAYA+S I  RA+P++RDG KPVHRRI++AM + G    A F K 
Sbjct: 29  RINYVDIEAEMQNSYLAYAMSVIVGRALPEVRDGLKPVHRRILYAMYDGGFRPNAGFYKC 88

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
            R+VG+V+ K HPHGD +VYD+L RL QP+  RYPLI+GQGNFG+      AA RYTE +
Sbjct: 89  MRVVGDVLAKFHPHGDTAVYDALARLVQPWSLRYPLIAGQGNFGSPGNLGPAAPRYTECK 148

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ +DE+ VDF D Y+  D EPVV P++FPNLL NG+ GIAVGMAT IP HN
Sbjct: 149 MAPLAMEMVRDIDENTVDFVDNYDGRDQEPVVLPARFPNLLVNGSEGIAVGMATRIPPHN 208

Query: 196 VQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ E     +D+PE S E+LL      + GPDFPTG  I+  + +I + YR GRG   
Sbjct: 209 LREVAEGVQWYLDHPEASREELLNALIGIVKGPDFPTGATIL-GKTAIEQVYRTGRGSII 267

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
            RA   +EE+ +   C+VVTE PYQV    L  KIA+L+    +  + DIRDE S    +
Sbjct: 268 QRAVVNIEEI-QNRQCLVVTEFPYQVNPDNLALKIAQLVKDGALAGIADIRDETSDRSGQ 326

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +D+++ FP NM  L    VP+ + LDG +  W+ H+ E
Sbjct: 327 RLVIVLKRDAVAKVVLNNLYKRTDLQSSFPANMLALVD-GVPRTLSLDGFVHYWVKHQVE 385

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQ 427
           V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     +   V       + E Q
Sbjct: 386 VIIRRTQFRLEKAKERLHILEGYLKALDALDEVIALIRRSPTVEDARVGLMDLLKIDEVQ 445

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E   L+ +   ++ ++ +  +Q   +  E+ E+ E F 
Sbjct: 446 ADAILAMQLRRLAALERQKILDEHAQLVEKVRDLEDIIATPARQRAIVGEELAEIVERFG 505

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT     +        + +I +E + V I+  G+ +                
Sbjct: 506 DE-----RRTAIVPFNGEMT---DEDLIPEEEVVVTITRDGYAKRTRVDNYKAQHRGGKG 557

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           +     ++ D ++      T   +L  +  G+ Y      +        G+ +  L+   
Sbjct: 558 VRGAKLRQDDVVEHFFVTTTHHWLLFFTNLGRVYRAKGYEIPEGGRDSRGQHVANLLAFQ 617

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-----EK 649
            ++ I        Y+    L++ +  G       ++  +    G   + +        ++
Sbjct: 618 PDEAISQVLAIRDYEQAQYLVLATKSGLVKKTALADYNSPRSGGLIAINLRETEDGQVDE 677

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +     V   D + +V    + L F+     +  M R   GVR   +++   + +    I
Sbjct: 678 LVSAALVNAEDDLILVSCGGQSLRFNCTDEAVRPMGRSTSGVRGMRFREDD-ALLTMEVI 736

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +      + +        +  RGG+G  V       G  + +
Sbjct: 737 EHDSDLLVVTEGGFAKRSAIDTYPVRGRGGLGVKVANLVEDRGGLVGA 784


>gi|58616969|ref|YP_196168.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel]
 gi|58416581|emb|CAI27694.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel]
          Length = 898

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 246/840 (29%), Positives = 394/840 (46%), Gaps = 99/840 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN N     NV  VS+   LE+ YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G
Sbjct: 1   MSNLN-----NVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSG 55

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KK+AR+VG+V+GK HPH D ++YDSLVR+AQ F    PLI  QGNFG+IDGD 
Sbjct: 56  YDYSKPYKKAARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDP 115

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            A+ RYTEAR+ + A  +L  +DED VDFR  Y+  +SEPVV P++FPN+L NG  G+AV
Sbjct: 116 PASMRYTEARLARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAV 175

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM+T+IPSHN+ E+ +A +A IDNP+I+ ++L++ + GPDFPTGG I+     I  ++  
Sbjct: 176 GMSTNIPSHNLGEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTIL-GDAGIRSAFMT 234

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   V+ +  VE++  G   I++ EIPYQV K++LIE+I EL+  KRI  + D+RDES
Sbjct: 235 GKGTIIVQGKTHVEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    V     + +   +++  I  L+ + T F +N  VL     P+VM L  I+  ++
Sbjct: 295 NKMGIRVAIELKKQVSHQVVLNQILGLTPLRTSFSINTLVLD-NNKPKVMSLLDIISTFI 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-------- 417
            +R+EVL RR+ FR++ +  +  +  G+ IA LNID++I+IIR+                
Sbjct: 354 EYRKEVLTRRTQFRLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKW 413

Query: 418 ---------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                     LT  QV +IL ++L+ L  LE+ +++ +L ++++
Sbjct: 414 SALASVKEMIELVADSKSIVVNDVCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVS 473

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             ++   LL + +     +   + E+K   +         + F              +  
Sbjct: 474 MIKQYTELLGNKESLLKLVKNGLEEIKAKLAVPRKTTIDYSHFETDVEDLIPKEDMVVTV 533

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +        R+ +           +E D +      +T   +L  S  G+ Y L 
Sbjct: 534 TMSGYIKRVKLSNYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLK 593

Query: 577 AGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEE 628
              L        G ++  +  L+ N+ I +               +L  ++ GN      
Sbjct: 594 VYKLPLGDPTSRGRSLVNIFPLSENEVITSVMPLPENQEDTEQLNILFATASGNLRRNAL 653

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE-MSR-GK 685
           S+       GK  + +   + +  V   T  +HV +  +  K + F++  I +   R   
Sbjct: 654 SDFQYVPSNGKIAMVLDESDTLISVKVCTAENHVLISTKLGKSIRFAVSNIRQFKGRISD 713

Query: 686 GVRLQSY-------------------------------------KDGGIS---------- 698
           GVR                                         K+ G+           
Sbjct: 714 GVRAIRLSSEEDQVISMSVLIAMEVDSETKDLYLKIPLEKRLLVKEDGVINQGVANMLVD 773

Query: 699 -----DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                DV    +      +      + +  +        RGGVG +      R+G  +SS
Sbjct: 774 LGLSQDVFMSMVQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRNGNVISS 833



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 7/116 (6%)

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTG 658
           V   +  +   +L V+  G        E     R G   + +     +   +      + 
Sbjct: 780 VFMSMVQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRNGNVISSFSVESN 839

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTW 711
           DH+ ++    KL+  +++ I  + R  +GV L      +  +S        +    
Sbjct: 840 DHIMLITNKGKLIRIAVNDIRIVGRSTQGVTLFKTDKQEKVVSVAKVIDHKDESDI 895


>gi|54298984|ref|YP_125353.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Paris]
 gi|53752769|emb|CAH14204.1| DNA topoisomerase IV, A subunit [Legionella pneumophila str. Paris]
          Length = 751

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 278/746 (37%), Positives = 428/746 (57%), Gaps = 25/746 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E  +   L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +
Sbjct: 7   MNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVGMA+ I
Sbjct: 127 TEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y  G G  +
Sbjct: 187 LPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYESGNGSIK 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA +  E+       IV+T +PYQV  +R++E+IA  +  K++P++ED+RDES  +   
Sbjct: 247 MRAIYAQEK-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL EWL  R 
Sbjct: 302 RLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLTILTEWLEFRL 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  ++PK  ++SRF+LTE Q +
Sbjct: 362 TTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFNLTERQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + ++ F   
Sbjct: 422 AILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHSLLKELVKEEITKDRDEFGDP 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+         +A  ++ ++  EPITVV+S  GW+R+ K H VD   L +K GD
Sbjct: 482 -----RRSPII-TREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGKELSYKAGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K    A T  ++L    +GK Y+LP   L S RG GE +   ++             +
Sbjct: 536 EFKAQTLARTNQQVLFFDGEGKVYSLPGHALPSARGQGEPLTGKLNPAEGILFEAIVGGE 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGE 666
              K+L+ +  G  FI +  ++    R GK  +K+S    +     +       VA    
Sbjct: 596 PEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATN 655

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSY 719
             +LLIFS++++PE+SRGKG +L S        ++  I D+      + LT   +  R +
Sbjct: 656 VGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDSLTV-HAGKRHF 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
                DL  + G+RG  G+ +P+G  
Sbjct: 715 TLKGEDLTHYKGERGRRGNRLPRGLQ 740


>gi|119386572|ref|YP_917627.1| DNA gyrase subunit A [Paracoccus denitrificans PD1222]
 gi|119377167|gb|ABL71931.1| DNA gyrase, A subunit [Paracoccus denitrificans PD1222]
          Length = 913

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 256/848 (30%), Positives = 395/848 (46%), Gaps = 108/848 (12%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +N  +   ++  +   + +   +   YL YA+S I  RAIPDLRDG KPVHRR++ AM E
Sbjct: 13  ENGGSERAVMHHDGPVIDIAHEMRSSYLDYAMSVIVSRAIPDLRDGLKPVHRRVLFAMHE 72

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      ++KSAR VG+ +GK HPHGD S+YD+LVR+AQ F    PL+ GQGNFG++DG
Sbjct: 73  TGNTHDKPYRKSARPVGDTMGKYHPHGDASIYDALVRMAQDFSMSLPLLDGQGNFGSMDG 132

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DS AA RYTE RM + +  +L  +D+D V+F+D Y+ +D EP V P++FPN+L NG  GI
Sbjct: 133 DSPAAMRYTEVRMDKPSAYLLMDIDKDTVEFQDNYDGKDREPTVLPARFPNMLVNGAGGI 192

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A LALI++P++  E+LLE + GPDFPTGGII+  R    ++Y
Sbjct: 193 AVGMATNIPPHNLGEVVDATLALIEDPDLPTERLLEIVPGPDFPTGGIIL-GRSGARKAY 251

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   VRA+  +EE   G   I++ EIP+QV K+ LIEKIAEL   KRI  +  ++D
Sbjct: 252 LEGRGSIIVRAKTRIEETRAGRQAIILDEIPFQVNKASLIEKIAELAKEKRIEGIAHVQD 311

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      V+    R    ++++  +F  + M+T F  NM  L+ G  P+ + L   L  
Sbjct: 312 ESDRVGVRVVIELKRDATAEVVLNQLFRFTPMQTSFGANMLALN-GGRPEQLTLRDFLTH 370

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------- 415
           +L  R EV+ RR+++ ++    R  +L GL +A  N+DE++A IR+              
Sbjct: 371 FLTFREEVVARRTAYELRKARERAHVLCGLAVAVSNVDEVVATIRSSADAAEARERLMTR 430

Query: 416 ---------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     ++L+E Q  AIL LRL+ L +L   ++  EL +L
Sbjct: 431 RWPAHEIVEYLKLIDDPLHPVNEDGTYNLSETQARAILELRLQRLTQLGVQEVTDELKSL 490

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
                +  ++L S ++    I+ E+REVK +F+       RRT   + +        + +
Sbjct: 491 AEAIREFLAILASRERIMGIISDELREVKNLFAVP-----RRTEITDWAGD---LDDEDL 542

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           IE+E + V I++ G+I+          +     LS +  KE D +     A+T   +L  
Sbjct: 543 IEREDMVVTITSGGYIKRTALAEFRAQRRGGKGLSGMATKEDDVVTTLFVANTHTELLFF 602

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVS 618
           +TDG  Y L    L        G+AI  ++ +     I      D         +++  +
Sbjct: 603 TTDGMVYRLKTWRLPLGGRTAKGKAIVNILPIGSGVSIAALMPVDAPQSEWDGYQVIFST 662

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK-VTGDHVAVVGENRKLLIFSIDQ 677
           S+G+      S+     R GK  +K+    ++         D V +     + + F    
Sbjct: 663 SEGDVRRNALSDFANVMRNGKIAMKLPEGVELIGARMATESDDVMLFTAAGRAIRFQTTD 722

Query: 678 IPE-MSR-GKGVRLQSYKDGGISDVICFK------------------------------- 704
           +     R   GVR      G     +                                  
Sbjct: 723 VRVFKGRDSTGVRGIRLASGDRVVSMSIIRHFEADAGERAAYLKMRRAVEGALDDGAEAD 782

Query: 705 -------------------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                                     +    R   +  +     +  RGG G +      
Sbjct: 783 EDEDNVVEAAISQERYAEMSAAEDLILTITARGAGKISSSHDYPVRGRGGQGVMAMDKAM 842

Query: 746 RSGKFLSS 753
           R G  ++S
Sbjct: 843 RGGPLVAS 850



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L ++++G   I    +     R G+  + +        +     V   D + +  
Sbjct: 804 AEDLILTITARGAGKISSSHDYPVRGRGGQGVMAMDKAMRGGPLVASFPVDRDDQIMLAT 863

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
              + +   +D I   SR   GVR+ +   G     + 
Sbjct: 864 STGQSIRVPVDGISFRSRSAGGVRVFNTAPGEEVVSVA 901


>gi|317493407|ref|ZP_07951828.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918350|gb|EFV39688.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 759

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 274/757 (36%), Positives = 449/757 (59%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L+ +  +  +L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LIHDGSERQALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP   P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDYTPNFDGTLQEPKTLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+ +A + LID P ++++ +LE++ GPD+PT   I+  RE I + YR
Sbjct: 178 VGMATDIPPHNVRELAKALVELIDKPSMTLDDILEHVQGPDYPTEAEIITPREEIRKIYR 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+       +V++ +P+Q   ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 TGRGSVRMRAIWKKEDGE-----VVISALPHQTSGAKVLEQIASQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRSNRVDMDQVMAHLFATTDLEKSYRINMNMIGLDNRPAVKNLLEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA+RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++ RF 
Sbjct: 353 EWLAYRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRTEDEPKPKLIERFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE +I+ E D L  E++ + +LL S ++    I  EI+  
Sbjct: 413 ISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDHLQALLASERKLNTLIKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E   A KA  +   I  EP+T+V+S  GW+RS K H +D + 
Sbjct: 473 AQAYGD-----DRRSPLQEREEA-KAMSEHDFIPSEPVTIVLSEGGWVRSAKGHDIDPTG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I
Sbjct: 527 LSYKAGDSFRAAARGKSNQPVVFIDSTGRSYALDPTTLPSARGQGEPLTGKLTPPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DH 660
               +     KLL+ S  G  F+   ++++A  R GK  + +    K    +++ G  D 
Sbjct: 587 EQVLMAADDQKLLMASDAGYGFVCTFNDLVARNRAGKAMITLPENAKALPPIEINGADDM 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWID 713
           +  + +  ++L+F ++ +P++S+GKG ++ S         +  ++ +        +T   
Sbjct: 647 LLAITQAGRMLMFPVNDLPQLSKGKGNKIVSIPSAQAASGEDKLAWLFVLPPQTSITV-H 705

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              R       +L  +  +RG  G+L+P+G  R  + 
Sbjct: 706 VGKRKLVMKPQELQKFRAERGRKGTLLPRGLQRIERV 742


>gi|292492463|ref|YP_003527902.1| DNA topoisomerase IV, subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581058|gb|ADE15515.1| DNA topoisomerase IV, A subunit [Nitrosococcus halophilus Nc4]
          Length = 743

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 276/751 (36%), Positives = 440/751 (58%), Gaps = 23/751 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +  +++  SL    E+ YL Y++  I +RA+P L DG KPV RRII+AMSE+GL   A +
Sbjct: 1   MNTDIEERSLGDFAEKAYLDYSMYVILDRALPHLADGLKPVQRRIIYAMSELGLSASAKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G+ D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQQFSYRYPLIEGQGNWGSPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+   AEL+L  + +  V++   ++    E  + P++ P++L NG +GIAVGMAT I
Sbjct: 121 TEARLAPFAELLLSEIGQGTVEWVPNFDGTLREVSLLPARVPHVLLNGATGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A L L++ P+ ++ +L + + GPD+PT   I+     +++ Y+ G G  R
Sbjct: 181 PPHNLGEVVAACLRLLERPKATVAELCDCLPGPDYPTKAEIITPPTELLKMYQTGHGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA + +E+       IV+  +PYQV  +R++E+IA+ + AK++P+L D+RDES  +   
Sbjct: 241 MRACYTLEKGD-----IVINALPYQVSGARILEQIAQQMQAKKLPMLVDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+VL P+ R ++ + +M  +F  +D+E  + +N+NV+ +   PQV  L  +L EWL  R 
Sbjct: 296 RLVLVPRTRRVEVETVMSHLFATTDLERSYRVNLNVIGLDGRPQVKNLRDLLAEWLHFRI 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           E++ RR   R++ +  R++IL GLLIAYLNIDE+IAIIR E++PKPV+++RF L++ Q +
Sbjct: 356 EIIRRRLQHRLEKVQDRLQILAGLLIAYLNIDEVIAIIRKEEEPKPVLMARFELSDRQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L +LEE +I++E   L AE+++++ +L S +Q    +  E+    E F  +
Sbjct: 416 AILELKLRHLMRLEETKIRAEDKALAAERKRLEKILGSERQIKGLLRKELVADVEKFGDA 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A  A  +QA++  EPITVV+S +GW+R+ KSH VD + L ++ GD
Sbjct: 476 -----RRSPIVERPSA-TALDEQALLPAEPITVVLSEKGWVRAAKSHEVDPTTLSYRTGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             + +    +    + L + G++YTLPA  L S RG GE +   + +    + V   + +
Sbjct: 530 GYRASARGRSNQPAIFLDSTGRSYTLPAHGLPSARGQGEPLSGHLQVVPGAEFVAVLLAE 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGE 666
                L+ S  G  F+ +   + A  R GK  L +S+  +    V V     + +A+   
Sbjct: 590 PEIFYLMASDAGYGFLCQAKHLYAKNRAGKAVLNLSAGARALPPVPVADIEVEQIAIATN 649

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAGRSYN 720
             +LL+F + ++P M+RGKGV+L                 +      G   I +  R   
Sbjct: 650 TGRLLLFPLGELPIMTRGKGVKLIHIPSPRSAQRQEAVRALAVVPPGGALQIFAGRRHLT 709

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               DL  + G+R   G  +P+GF +  + +
Sbjct: 710 LKSEDLEFYRGERARRGHTLPRGFRQVEQIV 740


>gi|48478487|ref|YP_024193.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790]
 gi|48431135|gb|AAT44000.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790]
          Length = 789

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 234/749 (31%), Positives = 393/749 (52%), Gaps = 32/749 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   ++  YL YA+S I  RAIPD+RDG KPV RRII++M E+ L+    +KKSARIVG
Sbjct: 4   PIEEEIKNSYLDYAMSVIVSRAIPDVRDGLKPVQRRIIYSMYELNLNHDKPYKKSARIVG 63

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           E +GK HPHGD ++YD+L R++Q F  RYPL+ GQGNFG+IDGD+ AA RYTEAR+ ++A
Sbjct: 64  ETMGKYHPHGDSAIYDALARMSQDFSLRYPLVDGQGNFGSIDGDAPAAMRYTEARLARIA 123

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +++ +D++ V F   ++   +EPV FPSK P LL NGTSGIAVGMAT++  HN+ E+C
Sbjct: 124 EEMIRDIDKETVPFMPNFDGSLNEPVYFPSKIPQLLINGTSGIAVGMATNMLPHNLNEVC 183

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A    ID+ + S+  LL++I GPDFP GGII  +++ I + Y+ G G    R     E+
Sbjct: 184 DAIKYKIDHEDSSLYDLLKFIKGPDFPGGGIIYRTKDMI-DIYKTGHGKVICRGSIEAED 242

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  I++  +PY + K++ I+ +A L+   +I  + DI+DES  +   ++       
Sbjct: 243 -----KRIIIKSLPYGLNKAQYIQDLANLVNNDQINNISDIKDESDRNGIRIVIKVKGHD 297

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             DL++  ++  + +ET   +   VL    VP VM L+ ++K ++  R +V+ +RS + +
Sbjct: 298 RIDLVVNQLYEKTQLETSISVTNLVLLD-NVPVVMNLEDLIKNFIGFRLDVIKKRSEYDL 356

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNLRLR 437
           + ++ R+ IL GLLIA  NID +I IIR+         S      LTE Q +AIL++RL+
Sbjct: 357 KKLNERMHILNGLLIALNNIDLVIKIIRSSSDVNSARSSLIKELSLTEAQANAILDMRLQ 416

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  LE  ++K E+D +  + E +  ++N+   + N +  E+ E+K+ +       RRRT
Sbjct: 417 RLTALEISKLKEEIDEINKKIEYLSDVVNNENTRKNVLKAELDEIKKQYGD-----RRRT 471

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-------HFKEGDS 550
              E   + +   ++ +I  E   +++S +G ++ +                 + ++ DS
Sbjct: 472 EVIEGEISRRD--EEDLIPNEESVIILSEKGLLKRVSLDEYKSQRRGGRGIITNTRDNDS 529

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           +K  +     D +   +  G+     A        +  G +    + LN N+ I      
Sbjct: 530 VKSVVSCMAHDTLYFFTNTGRVLKEKAYRIEKRDRKALGVSGNKFLKLNDNEIIRQIIKS 589

Query: 609 DS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVG 665
                  L++V+  G       SEI+   + G   + +++ +++  V +++G   + V  
Sbjct: 590 PENLEDLLIIVTKNGFIKKTNISEILDMRKSGIKIINLANNDEVVSVSEISGSSKIFVAA 649

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
            N K  +F  D++P  SR  +GV+        +     F + +  T +        +   
Sbjct: 650 SNGKAAVFLSDEVPLTSRSSRGVKSMKLNGSYVISA--FPVKDDDTILSITENGLGKRTR 707

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   RG  G  + K   ++GK + +
Sbjct: 708 ATEFPEHHRGSSGVYLFKENEKTGKLVMA 736



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-T 657
           +++AF       +L ++  G       +E   + R           EK   + + + V  
Sbjct: 682 VISAFPVKDDDTILSITENGLGKRTRATEFPEHHRGSSGVYLFKENEKTGKLVMALPVKD 741

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            D + +V +N + +      I  +SR   GVRL    +       C  
Sbjct: 742 DDEIIIVTKNDQTIRIKSSDISILSRFASGVRLVGLTENDSISTACVV 789


>gi|52843173|ref|YP_096972.1| DNA topoisomerase IV subunit A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630284|gb|AAU29025.1| DNA topoisomerase IV subunit A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 751

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 278/746 (37%), Positives = 427/746 (57%), Gaps = 25/746 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E  +   L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +
Sbjct: 7   MNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVGMA+ I
Sbjct: 127 TEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y  G G  +
Sbjct: 187 LPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAIYESGNGSIK 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA +  E+       IV+T +PYQV  +R++E+IA  +  K++P++ED+RDES  +   
Sbjct: 247 MRAIYTQEK-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL EWL  R 
Sbjct: 302 RLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILTEWLEFRL 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  D+PK  ++SRF+LTE Q +
Sbjct: 362 ATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHDQPKQGLISRFNLTERQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + ++ F   
Sbjct: 422 AILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHSLLKELVKEEITKDRDEFGDP 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                 R +        +A  ++ ++  EPITVV+S  GW+R+ K H VD   L +K GD
Sbjct: 482 ------RLSPIITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGKELSYKAGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K    A T  ++L    +GK Y+LP   L S RG GE +   ++             +
Sbjct: 536 EFKAQTLARTNQQVLFFDGEGKVYSLPGHVLPSARGQGEPLTGKLNPAEGVLFEAIVGGE 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGE 666
              K+L+ +  G  FI +  ++    R GK  +K+S    +     +       VA    
Sbjct: 596 PEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATN 655

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSY 719
             +LLIFS++++PE+SRGKG +L S        ++  I D+      + LT   +  R +
Sbjct: 656 VGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDSLTV-YAGKRHF 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
                DL  + G+RG  G+ +P+G  
Sbjct: 715 TLKGEDLTHYKGERGRRGNRLPRGLQ 740


>gi|163749332|ref|ZP_02156581.1| DNA topoisomerase IV subunit A [Shewanella benthica KT99]
 gi|161331051|gb|EDQ01977.1| DNA topoisomerase IV subunit A [Shewanella benthica KT99]
          Length = 757

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 264/757 (34%), Positives = 436/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ +S+R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAINLSLDGVEQMSMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  +E+L+E++ GPD+PT   I+  R  I + Y 
Sbjct: 181 VGMATDVPPHNTRELVAACVELLDNPKADLERLMEFVPGPDYPTEAEIITPRADIAKIYS 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA + VE     S  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGKGSIKARAVYAVE-----SGEIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RI++ P++  +D D LM  +F  +D++  F +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPVRIIVVPRSNRVDCDQLMAHLFATTDLQKNFRVNLNIIGLNGKPQVKGLKQILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR + R+  +  R+ IL  L++A+LNIDE+I IIR ++ PK  ++SRF 
Sbjct: 356 EWLEFRLTTVTRRITHRLDKVLSRLHILDALMVAFLNIDEVIEIIRYKENPKTELMSRFQ 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q DAIL+L+LR L KLEE +I SE D L  E++K++ LL+S ++    I  E+   
Sbjct: 416 ISEIQADAILDLKLRHLAKLEEVKITSEQDELEVERDKLELLLSSDRRLKTLIKKELIHD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E S +   T Q+     E +TVV+S +GW+R  K H +D  A
Sbjct: 476 GETYGD-----DRRSPLVERSESKALTEQEL-APVEAVTVVLSEKGWVRCAKGHDIDGHA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+++      L S R  GE I    +L+  + +
Sbjct: 530 LSYKSGDGFLCSAVGRSNQPAVFIGSTGRSFATDTHTLPSARSQGEPITTRFNLSPGEVM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     L+ S  G  F+    ++++  + GK  L + +  K+     V     +
Sbjct: 590 EHLLLGDDEKFYLLASDAGYGFVGSYKDMVSRNKAGKALLSLPANAKVIKPQLVDKSKVE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-ID 713
            +  +    ++L+FS++ +P++S+GKG ++        K+     +    + E ++  + 
Sbjct: 650 SILAITNEGRMLLFSMESLPQLSKGKGNKIIGIPTERAKNREELLIHLHVVPEDISVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|224283957|ref|ZP_03647279.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
 gi|311063465|ref|YP_003970190.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|310865784|gb|ADP35153.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
          Length = 910

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 224/772 (29%), Positives = 373/772 (48%), Gaps = 28/772 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +    L +  V    ++  + + YL YA+S I ERA+PD+RDG KPVHRRI++AM + G 
Sbjct: 31  NEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGGY 90

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K AR V +V+G  HPHGD ++YDSLVR+AQP+  RY L+ GQGNFG+   D  
Sbjct: 91  RPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDPP 150

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+    EP V P++FPNLLANG+SGIAVG
Sbjct: 151 AAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAVG 210

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ E     +D+PE S E+LL      I GPDFPTG  I+   + I ++
Sbjct: 211 MATNIPPHNMRELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATIL-GHKGIEQA 269

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  + D+R
Sbjct: 270 YRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADMR 328

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  +
Sbjct: 329 DETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFI 387

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMV 418
           + W+ H+ EV+ RR+ +  +  + R  IL+GLL A   IDE+I +IR+       +P ++
Sbjct: 388 RHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGREDARPKLM 447

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + + Q DAIL+++L  L  +E  +I  E + L+ +    + +L   ++Q   +  E
Sbjct: 448 EFLDIDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDILAKPERQRTIVGDE 507

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+   +           +         A     +       +  +     R+      
Sbjct: 508 LDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKRTKANEYRAQHRGGK 567

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y + A  L  G    +   +  L+  
Sbjct: 568 GIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQF 627

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I T      Y+    L++ +  G       +E  +  + G   ++++++      
Sbjct: 628 GPDETIQTVLSIPNYEVAKYLVLATRTGKVKKTALAEYDSPRQGGLIAVRLAADEETGEP 687

Query: 648 -EKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYK-DGGISDVI 701
            +++         D + +V +    L F+   DQ+  M R   GV+   ++ D  +  + 
Sbjct: 688 TDELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMGRQTAGVQGMKFRGDDELLAMD 747

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +      + +        L  R G G    +     G  + +
Sbjct: 748 VVPEDSKQDLLVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGRGSLVGA 799


>gi|254464123|ref|ZP_05077534.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I]
 gi|206685031|gb|EDZ45513.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I]
          Length = 901

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 257/832 (30%), Positives = 400/832 (48%), Gaps = 108/832 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR V
Sbjct: 16  VSIEAEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKAYRKSARPV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 76  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 136 AAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L+EYI GPDFPTG  ++  R    ++Y  GRG   +RA+  VE
Sbjct: 196 VDATLALIEDPDLTSEQLIEYIPGPDFPTGA-LMLGRSGARKAYLEGRGSVIIRAKTRVE 254

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IVV EIPYQV K+ +IEKIAE +  K+I  +  ++DES  +   V+    R 
Sbjct: 255 EIRKDRYAIVVDEIPYQVNKAAMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELKRD 314

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR++  
Sbjct: 315 ATPEVVLNQLYRFTPMQTYFGCNMLALN-GGRPEQLTLRRFLTSFIDFREDVVARRTAHL 373

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------------------------- 412
           ++    R  IL GL +A  NIDEI+  IR                               
Sbjct: 374 LRKARERSHILCGLAVAVTNIDEIVTTIRQSTDAAEAREKLMTRRWPAQPILEYIALIDD 433

Query: 413 --PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + +    +L+S ++
Sbjct: 434 PTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAGKIKDYLEILSSRER 493

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I+ E+REV++ F+       RRT   + S   +    + +IE+E + V +++ GWI
Sbjct: 494 IMGIISDELREVRDNFAVP-----RRTEIVDWSGDME---DEDLIEREDMVVTVTSGGWI 545

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 546 KRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 605

Query: 583 --GRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
               G G+AI  ++ +     I      D         +++  +S G+      S+    
Sbjct: 606 SGRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWENLQVVFATSGGDVRRNRLSDFTNV 665

Query: 635 TRKGKTFLKVSSEE--KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRL 689
            R GK  +K+  +   K+  V      D V +   + + + F    +    SR   GVR 
Sbjct: 666 RRNGKIAMKLPEDGSVKLVNVRICSEDDDVMLFTNSGRAIRFRSTDVRVFNSRESTGVRG 725

Query: 690 QSYKDGGISDVICFK--------------------------------------------- 704
                      +                                                
Sbjct: 726 IRLTGEDSVVSMSVIRHSKYTPEQRTAYLKMRRAMAGLTDDAEASDEDAPEDPNFSTELY 785

Query: 705 ---ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +        +  +     +  RGG+G        R G+ ++S
Sbjct: 786 AEMSAAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMDKAMRGGEIVAS 837



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%)

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +      +              A   L+            D N + ++           +
Sbjct: 737 MSVIRHSKYTPEQRTAYLKMRRAMAGLTDDAEASDEDAPEDPNFSTELYAEMSAAENL-I 795

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGENRKL 670
           L +++ G+  +    +     R G     +       ++     V   D + +     + 
Sbjct: 796 LTITAGGSGKLSSSHDYPVRGRGGMGVTAMDKAMRGGEIVASFPVELDDQIMLATSKGQS 855

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   +D I   SR   GVR+ +   G     + 
Sbjct: 856 IRVPVDGISFRSRSAGGVRVFNTGKGEEVVSVA 888



 Score = 41.7 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 2/166 (1%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           G R T    V         +   E+    + +       +  + + D  A       +  
Sbjct: 725 GIRLTGEDSVVSMSVIRHSKYTPEQRTAYLKMRRAMAGLTDDAEASDEDAPEDPNFSTEL 784

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            A  +   + IL ++  G      + +       G  +  +       +IV +F  +   
Sbjct: 785 YAEMSAAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMDKAMRGGEIVASFPVELDD 844

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           ++++ +SKG +  V    I   +R   G         E++  V  +
Sbjct: 845 QIMLATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGEEVVSVAWI 890


>gi|310286526|ref|YP_003937784.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17]
 gi|309250462|gb|ADO52210.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17]
          Length = 910

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 225/772 (29%), Positives = 373/772 (48%), Gaps = 28/772 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +    L +  V    ++  + + YL YA+S I ERA+PD+RDG KPVHRRI++AM + G 
Sbjct: 31  NEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGGY 90

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K AR V +V+G  HPHGD ++YDSLVR+AQP+  RY L+ GQGNFG+   D  
Sbjct: 91  RPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDPP 150

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+    EP V P++FPNLLANG+SGIAVG
Sbjct: 151 AAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAVG 210

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ E     +D+PE S E+LL      I GPDFPTG  I+   + I ++
Sbjct: 211 MATNIPPHNMRELAEGVHWTLDHPEASHEELLNALIGIIKGPDFPTGATIL-GHKGIEQA 269

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  + D+R
Sbjct: 270 YRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADMR 328

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + LD  +
Sbjct: 329 DETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLSLDAFI 387

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMV 418
           + W+ H+ EV+ RR+ +  +  + R  IL+GLL A   IDEII +IR+       +P ++
Sbjct: 388 RHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEIIRLIRSSQGREDARPKLM 447

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + + Q DAIL+++L  L  +E  +I  E + L+ +    + +L   ++Q   +  E
Sbjct: 448 EFLDIDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDILAKPERQRTIVGDE 507

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+   +           +         A     +       +  +     R+      
Sbjct: 508 LDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKRTKANEYRAQHRGGK 567

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y + A  L  G    +   +  L+  
Sbjct: 568 GIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQF 627

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I T      Y+    L++ +  G       +E  +  + G   ++++++      
Sbjct: 628 GPDETIQTVLSIPNYEVAKYLVLATRTGKVKKTALAEYDSPRQGGLIAVRLAADEETGEP 687

Query: 648 -EKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYK-DGGISDVI 701
            +++         D + +V +    L F+   DQ+  M R   GV+   ++ D  +  + 
Sbjct: 688 TDELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMGRQTAGVQGMKFRGDDELLAMD 747

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +      + +        L  R G G    +     G  + +
Sbjct: 748 VVPEDSKQDLLVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGRGSLVGA 799


>gi|39938985|ref|NP_950751.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722094|dbj|BAD04584.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 835

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 239/771 (30%), Positives = 410/771 (53%), Gaps = 31/771 (4%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
             D  +N       N++ V+L   +++ +L+YA+S I  RA+PD++DG KPV RRI+++M
Sbjct: 7   QNDEANNHKDHDHGNIQEVNLSKEMKKSFLSYAMSVIVSRALPDIKDGLKPVQRRILYSM 66

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+G+   A++KK+AR+VG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ G GNFG+I
Sbjct: 67  KELGVYSHASYKKAARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGHGNFGSI 126

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTE +M ++A  +++ +D+D +DF D Y+  + EP+V P+  PNLL NG +
Sbjct: 127 DGDKAAAMRYTEVKMAKMAMELIKNIDKDTIDFVDNYDGTEKEPLVLPTALPNLLINGAT 186

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IP+HN+ E+ +  +  I+N +ISI++L+++I GPDFPTGG ++   +S+  
Sbjct: 187 GIAVGMATKIPTHNLGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELL-GLQSLKS 245

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  G+G   ++A+  V +   G   I+VTEIPYQV+K+ LIEKIA L+  K +  + D+
Sbjct: 246 AYHTGQGAVILKAKSHVSKER-GKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVEEITDL 304

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES+     ++    R  +  +++  ++  S +   F +NM  L  G+ PQ++ L  IL
Sbjct: 305 RDESSRKGMKIVIELKRDANSKIILNKLYKHSQLRISFGINMVALV-GKTPQLVSLKQIL 363

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---V 418
           + +   R EV+ R+ SF ++    R  ++  L+    +I+  I +I+     K      +
Sbjct: 364 EAFFNFRIEVINRQKSFELKKASARKHLVTALITILEDIETAIKLIKTSTDVKEAQSKLM 423

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            R++  E Q  AIL + L+ L   E  ++ +E  NL  E  +  S+++S K++   +  E
Sbjct: 424 QRYNFDEIQSKAILEMSLQRLANQETQKLITEEKNLTQEILECQSIIDSQKKKERILEKE 483

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+K+ +        R+TT      A      + +IE++PI + I+N+G+I+S+   + 
Sbjct: 484 LLEMKKKYQD-----DRKTTL--NFDAPLNFEDEDLIEEKPIIITITNKGYIKSMDIDTY 536

Query: 539 --------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                    +S +   E D ++      T D  L  +  GK Y L    +  G+   +  
Sbjct: 537 KQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFTNKGKVYQLKGYEIPLGQRQSKGS 596

Query: 591 QLLIDLNHNQD-----IVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            L+  L   +D       +   +D +   L   + KG        E    +++G   +++
Sbjct: 597 HLVNFLPFEKDEFLTSFTSVKNFDQSQDYLFFATKKGIVKKTPLKEYSHISKRGLIAIRL 656

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVI 701
              +++  V K TG  ++ +   N   + F   +I  +SR   GV       D  +    
Sbjct: 657 KENDEVLTVNKTTGTKNIILASNNGNAICFCETKIKSISRNSMGVIGMRLGSDEFLVGAA 716

Query: 702 CFK-ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            F    +    +      + +  N     + +R G GS   K   + G+ +
Sbjct: 717 LFDTDSKEQNILVMTENGFGKITNVNQYRIQERSGKGSKTIKVNDQKGRLI 767



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/486 (12%), Positives = 151/486 (31%), Gaps = 26/486 (5%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I+E++   R     R +    +       +V   I         I+ I      K   
Sbjct: 360 KQILEAFFNFRIEVINRQKSFELKKASARKHLVTALITILEDIETAIKLIKTSTDVKEAQ 419

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
                R    E     +   +     +   + +       T+  L    +   +  +   
Sbjct: 420 SKLMQRYNFDEIQSKAILEMSLQRLANQETQKLITEEKNLTQEILECQSIIDSQKKKERI 479

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           L+  L E     ++      +F         ++++   I     ++      + D  K  
Sbjct: 480 LEKELLEMKKKYQDDRKTTLNFDAPLNFEDEDLIEEKPIIITITNKGYIKSMDIDTYKQQ 539

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 ++  ++     +   ++    +Y +       + + +  +  L   + + + + 
Sbjct: 540 KRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFTNKGKVYQLKGYEIPLGQRQSKGSHLV 599

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
             +   K+ F  S    +      +                +  +               
Sbjct: 600 NFLPFEKDEFLTSFTSVKNFDQSQDYLFFATKKGIVKKTPLKEYS------------HIS 647

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
              L A+  KE D +        T  I+L S +G A       + S   +   +  +  L
Sbjct: 648 KRGLIAIRLKENDEVLTVNKTTGTKNIILASNNGNAICFCETKIKSISRNSMGVIGMR-L 706

Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---- 649
             ++ +V A ++D+  K   +LV++  G   I   ++     R GK    +   ++    
Sbjct: 707 GSDEFLVGAALFDTDSKEQNILVMTENGFGKITNVNQYRIQERSGKGSKTIKVNDQKGRL 766

Query: 650 --MKLVVKVTGDHVAVVGENRKLLIFSIDQI-PEMSRG-KGVRLQSYKDGGISDVICFKI 705
             +++V+    D + V  +  +++  +IDQI    ++  +G R+   K G  +  +    
Sbjct: 767 ITLQVVLPT--DDLIVSSDKGQVVRVAIDQITKTKNKATQGTRIIKLKTGHKAVSVAVVK 824

Query: 706 CEGLTW 711
            E L  
Sbjct: 825 KEVLDV 830


>gi|293191019|ref|ZP_06609063.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
 gi|292820706|gb|EFF79672.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
          Length = 867

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 228/784 (29%), Positives = 388/784 (49%), Gaps = 43/784 (5%)

Query: 1   MGVDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  +  +++  + + E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++
Sbjct: 1   MSDEQTTDARHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G    ++F KS+R+VGEV+G  HPHGD ++YD+L RL QP+  RYPL++GQGNFG
Sbjct: 61  AMYDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
                  AA RYTE +M  +A  +++ +DE+ VDF+D Y+  + EP + P++FPNLLANG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVES 235
           + GIAVGMAT IP HN++E+       +++P+ S E+    L++ I GPDFPTG  I+  
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATIL-G 239

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
            + I ++YR GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+    I
Sbjct: 240 HKGIEDAYRTGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGAI 298

Query: 296 PLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + DIRDE++    + ++    R     +++ +++  + ++  F  NM  L    VP+ 
Sbjct: 299 GGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVD-GVPRT 357

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           + +DG ++ W+ H+ +V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR      
Sbjct: 358 LSIDGFIRHWINHQIDVIVRRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVD 417

Query: 415 PVMVSRFSLTENQVDA---ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                   L +        IL L+LR L  LE  +I  E   L A  + ++ +L   ++Q
Sbjct: 418 EARAGLMELLDVDAIQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDILAKPERQ 477

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I+ E+ E+ + F        RRT              + +I +E + V I+  G+ +
Sbjct: 478 RAIISAELGEIVDKFGDE-----RRTRILPFDGEMS---MEDLIPEEDVVVTITRDGFAK 529

Query: 532 S--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                     K     +     +  D ++      T + +L  +  G+ Y   A  +  G
Sbjct: 530 RTRTDNYRSQKRGGKGVRGTQLRGDDVVEHFFVTTTHNWLLFFTNLGRVYRAKAYEIPEG 589

Query: 584 RGHGE--AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
               +   +  L+    ++ I        Y+    L++ + +G       S   +    G
Sbjct: 590 GRDAKGQHVANLLAFQPDEHIAQVLAIRTYEDADFLVLSTKRGLVKKTPLSLYNSPRSGG 649

Query: 639 KTFLKVSSE-----EKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRL 689
              + +  +     +++     +   + + +V  + + + F  + DQ+  M R   GVR 
Sbjct: 650 IIAINLREDEDGKPDELVSAQTIMADEDLILVSRDGQAVRFTATEDQLRSMGRSTSGVRG 709

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
             ++ G    +      +    +      Y +           RG +G  V K     G 
Sbjct: 710 MKFR-GDDELLSMEVPRDNTDLLIVTESGYAKRTPVDEYPTKSRGTLGVRVGKLVDERGD 768

Query: 750 FLSS 753
            + +
Sbjct: 769 LVGA 772



 Score = 44.4 bits (103), Expect = 0.080,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 9/140 (6%)

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +RS+   +  +  + F+  D L           +L+++  G A   P     +     
Sbjct: 695 DQLRSMGRSTSGVRGMKFRGDDELLSMEVPRDNTDLLIVTESGYAKRTPVDEYPTKSRGT 754

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             +++   ++   D+V A V      ++V++  G    V  S++    R     +     
Sbjct: 755 LGVRVGKLVDERGDLVGALVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVI----- 809

Query: 648 EKMKLVVKVTGDHVAVVGEN 667
                     GD +  +  N
Sbjct: 810 ----FARPDEGDRIIAITRN 825


>gi|149196296|ref|ZP_01873351.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155]
 gi|149140557|gb|EDM28955.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155]
          Length = 859

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 224/758 (29%), Positives = 367/758 (48%), Gaps = 19/758 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       V    +   L + YL Y++S    RAIPD+RDG KP  RR++ AM ++ 
Sbjct: 1   MSDNQQDFS-TVTPQGIEKLLSDAYLQYSMSVNVGRAIPDVRDGLKPGMRRVLFAMDKLN 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  G+++ K AR+VG+VIGK HPHGD SVYD++VR+AQ F  R  LI GQGNFG+IDGDS
Sbjct: 60  LRKGSSYMKCARVVGDVIGKYHPHGDGSVYDTMVRMAQDFSMRGMLIDGQGNFGSIDGDS 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAAYRYTE RM ++AE +L  +D++ VD + T++   +EP V P+++PNLL NGT+GI V
Sbjct: 120 AAAYRYTECRMERLAEELLTDLDKNTVDMQPTFDGSQNEPTVLPARYPNLLVNGTTGIGV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN+ E+  A +AL+D P I+IE++++++ GPDFPT G I    + I   Y  
Sbjct: 180 GMATSIPPHNLGEVINATVALLDQPSITIEEMMQHLPGPDFPTAG-ISIGFDGIRRLYET 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGG  +R R  + E   G   IV+TEIPY V K  +++KIAEL+  K I  +  + DES
Sbjct: 239 GRGGVHLRGRAEIIE-KNGREQIVITEIPYAVNKENMVKKIAELVNNKVITGISSLNDES 297

Query: 306 AEDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +  V   V+     +    +++  ++  + +         ++   + P+ + L  +L+ +
Sbjct: 298 SSRVGIRVVVGIKTNAMATVVINQLYKHTQLAVSIGCQF-LVVDNKQPKTLNLKQLLQAY 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF 421
           L HR EV+ RR  F ++  +RR  IL+GLL A  +IDE+I IIR     +     +  RF
Sbjct: 357 LDHRLEVITRRIKFELEKAERRAHILEGLLKAVDHIDEVIKIIRASTNREDAHNQLKERF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+  Q  AIL++RL  L  L   ++ +E + L+        LL + + + + +  E+ E
Sbjct: 417 ELSNEQAKAILDMRLSQLTGLAIDELTAEYEELMKRIAHYRELLANRQMRLDVVKEELIE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V++ F+       R            A     +       +        R+       + 
Sbjct: 477 VRDKFADERRTEMRPGERDINYEDLIARASATITISNEGYIKRVPTEIYRTQNRGGKGVK 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHN 599
            +  K+ D +K    A T D I+  +  G+ + L   ++        G+A+  L++    
Sbjct: 537 GMETKDDDFVKQLTTACTHDYIMFFTNFGRMHWLKVYDIPEATRVSKGKAMVNLLEFEKG 596

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + +          D    +++ +  G       +      +K    + +  ++ +     
Sbjct: 597 EYVRAMISVDKVDDEDRFIMMSTRNGVVKKTALAAFKNMRKKPIKAIVLDEDDDLIEAKL 656

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+  + +         F         R  +G R     +      +   + E    + 
Sbjct: 657 TDGNKKIILSTREGIACHFKESDCRTQGRVTRGCRGIRLSESDQVVAMSI-VEESEDILV 715

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              +   +        L KRG  G    K   + G ++
Sbjct: 716 VTAKGMGKRSCVDDYRLTKRGAKGVRNIKL--KEGDYV 751



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 59/155 (38%), Gaps = 5/155 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                +I+L + +G A      +    +G        I L+ +  +V   + + +  +LV
Sbjct: 657 TDGNKKIILSTREGIACHFKESD-CRTQGRVTRGCRGIRLSESDQVVAMSIVEESEDILV 715

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           V++KG        +     R  K    +K+   + +  V+ +   D + +      ++  
Sbjct: 716 VTAKGMGKRSCVDDYRLTKRGAKGVRNIKLKEGDYVVEVMMIEDTDEIIMTTMEGLMVRI 775

Query: 674 SIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE 707
           S + I  + R  +GV +  +K      +   ++ E
Sbjct: 776 SAEPIRSLGRASQGVTIMKFKKASDLIISASRVVE 810


>gi|85057534|ref|YP_456450.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789639|gb|ABC65371.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 835

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 239/777 (30%), Positives = 411/777 (52%), Gaps = 41/777 (5%)

Query: 6   ISNSNTLVEE----------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHR 55
           +S+  T   E           ++ V+L   +++ +L+YA+S I  RA+PD++DG KPV R
Sbjct: 1   MSDHKTQNNEANIHKPHDHGKIQEVNLSEEMKKSFLSYAMSVIVSRALPDIKDGLKPVQR 60

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+++M E+G+   A++KK+AR+VG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ G 
Sbjct: 61  RILYSMKELGVYSHASYKKAARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGH 120

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           GNFG+IDGD AAA RYTE +M ++A  +++ +D++ +DF D Y+  + EP+V P+  PNL
Sbjct: 121 GNFGSIDGDKAAAMRYTEVKMAKMAMELIKNIDKETIDFVDNYDGTEKEPLVLPTALPNL 180

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           L NG +GIAVGMAT IP+HN+ E+ +  +  I+N +ISI++L+++I GPDFPTGG ++  
Sbjct: 181 LINGATGIAVGMATKIPTHNLGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELL-G 239

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
            +S+  +Y  G+G   ++A+  V E   G   I+VTEIPYQV+K+ LIEKIA L+  K +
Sbjct: 240 LQSLKSAYHTGQGAVILKAKSHVLEER-GKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIV 298

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + D+RDES+     ++    R  +  +++  ++  S +   F +NM  L  G+ PQ++
Sbjct: 299 EGITDLRDESSRKGMKIVIELKRDANAKIILNKLYKHSQLRISFGINMVALV-GKTPQLV 357

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  IL+ +   R EV+ R+ SF ++    R  ++  L+    +I+  I +I+     K 
Sbjct: 358 SLKQILEAFFNFRIEVINRQKSFELKKASARKHLVTALITILEDIEIAIKLIKTSTDVKE 417

Query: 416 VM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                + +++  E Q  AIL + L+ L   E  ++ +E  NL  E  +  S+++S K++ 
Sbjct: 418 AQRKLMQKYNFDEIQSKAILEMSLQRLSNQETQKLITEEKNLTQEILECKSIIDSQKKKE 477

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +  E+ E+K+ +        R+TT      A      + +IEK+PI + I+N+G+I+S
Sbjct: 478 RILEKELLEMKKKYQD-----DRKTTL--NFDAPLNFEDEDLIEKKPIIITITNKGYIKS 530

Query: 533 LKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           +   +          +S +   E D ++      T D  L  +  GK Y L    +  G+
Sbjct: 531 MDIDTYKQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFTNKGKVYQLKGYEIPLGQ 590

Query: 585 GHGEAIQLLIDLNHNQD-----IVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKG 638
              +   L+  L   +D       +   +D +   L   + KG        E    +++G
Sbjct: 591 RQSKGSHLVNFLPFEKDEFLTSFTSIKNFDQSQDYLFFATKKGIVKKTPLKEYSHISKRG 650

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDG 695
              +++   +++  V K TG  ++ +   N   + F   +I  +SR   GV       D 
Sbjct: 651 LIAIRLKENDEVLTVKKTTGIKNIILASNNGNAICFCETKIKSISRNSMGVIGMRLGSDE 710

Query: 696 GISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +     F +  +    +      + +  N     +  R G GS   K   + G+ +
Sbjct: 711 FLVGAALFDVDSKEQNILVMTENGFGKITNVNQYRIQARSGKGSKTIKVNDQKGRLI 767



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 594 IDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
           + L  ++ +V A ++D       +LV++  G   I   ++     R GK    +   ++ 
Sbjct: 704 MRLGSDEFLVGAALFDVDSKEQNILVMTENGFGKITNVNQYRIQARSGKGSKTIKVNDQK 763

Query: 650 ---MKLVVKVTGDHVAVVGENRKLLIFSIDQI-PEMSRG-KGVRLQSYKDGGISDVICFK 704
              + L V +  D + V  +  +++  +IDQI    ++  +G R+   K G  +  +   
Sbjct: 764 GRLITLQVVLPSDDLIVSSDKGQVVRVAIDQITKTKNKATQGTRIIKLKTGHKAVSVAVV 823

Query: 705 ICEGLTW 711
             E L  
Sbjct: 824 KKEVLDI 830


>gi|259415725|ref|ZP_05739645.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B]
 gi|259347164|gb|EEW58941.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B]
          Length = 928

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 255/832 (30%), Positives = 401/832 (48%), Gaps = 108/832 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR V
Sbjct: 42  VSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKAYRKSARPV 101

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 102 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 161

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 162 AAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 221

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L++Y+ GPDFPTGG ++  R    ++Y  GRG   +RA+  VE
Sbjct: 222 VDATLALIEDPDLTSEQLIDYVPGPDFPTGG-VMLGRSGARKAYLEGRGSVIIRAKTRVE 280

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IVV EIPYQV K+ +IEKIAE +  KRI  +  ++DES  +   V+    R 
Sbjct: 281 EIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELKRD 340

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++  ++  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++ 
Sbjct: 341 ATAEVVLNQLYRFTPMQTSFGCNMLALN-GGRPEQLTLRKFLTSFIDFREDVVARRTAYN 399

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------------------------- 412
           ++    R  IL GL +A  N+DE++A IR+                              
Sbjct: 400 LRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMTRRWPASDIAGYIRLIDD 459

Query: 413 --PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++L+E Q  AIL LRL+ L +L   ++  EL+ L A+ ++   +L+S ++
Sbjct: 460 PTHTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVTDELEELAAKIKEYLEILSSRER 519

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               IA E+ EV+  F+       RRT   + S        + +IE+E + V +++ G+I
Sbjct: 520 IMGIIADELTEVRNSFAVP-----RRTEIVDWSGDMD---DEDLIEREDMVVTVTSGGYI 571

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 572 KRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 631

Query: 583 --GRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
                 G+AI  ++ +     I      D      +  +++  +S G       S+    
Sbjct: 632 GGRTAKGKAIVNILPIPTGVSIAAIMPVDRAEEEWNDLQIMFATSAGTVRRNRLSDFTNV 691

Query: 635 TRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVR 688
            R GK  +K   + +   +         D + +V    + + F   ++    SR   GVR
Sbjct: 692 MRNGKIAMKFEDDNEGTKLINARICSEDDDIMLVTNTGRAIRFPTTEVRVFNSRNSVGVR 751

Query: 689 LQSYKDGGISDVICFK-------------------------------------------- 704
                DG     +                                               
Sbjct: 752 GIKLGDGDEVVSMSVIRHSKYTPEQRTAYLKMRRAMAGLTDEDASDEDAVEDPNFSTELF 811

Query: 705 ---ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +        +  +     +  RGG+G        R G  ++S
Sbjct: 812 AEMSAAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMDKAMRGGALVAS 863



 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 5/112 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L +++ G+  +    +     R G     +        +     V   D + +  
Sbjct: 817 AENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMDKAMRGGALVASFPVELDDQIMLAT 876

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +   +D I   SR   GVR+ +   G     + +    G        
Sbjct: 877 SKGQSIRVPVDGISFRSRSAGGVRIFNTGKGEEVVSVAWIADNGDDEETVEE 928



 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 50/164 (30%), Gaps = 4/164 (2%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           +   +           ++    +   R         + D  A+      +   A  +   
Sbjct: 759 DEVVSMSVIRHSKYTPEQRTAYLKMRRAMAGLTDEDASDEDAVEDPNFSTELFAEMSAAE 818

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           + IL ++  G      + +       G  +  +        +V +F  +   ++++ +SK
Sbjct: 819 NLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMDKAMRGGALVASFPVELDDQIMLATSK 878

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV--TGDH 660
           G +  V    I   +R   G         E++  V  +   GD 
Sbjct: 879 GQSIRVPVDGISFRSRSAGGVRIFNTGKGEEVVSVAWIADNGDD 922


>gi|221639040|ref|YP_002525302.1| DNA gyrase subunit A [Rhodobacter sphaeroides KD131]
 gi|221159821|gb|ACM00801.1| DNA gyrase subunit A (Dna topoisomerase ii (Subunit a))
           [Rhodobacter sphaeroides KD131]
          Length = 920

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 260/832 (31%), Positives = 403/832 (48%), Gaps = 107/832 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 23  QVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKSARP 82

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 83  VGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDK 142

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 143 PAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 202

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  V
Sbjct: 203 VVDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARV 261

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES      V+    R
Sbjct: 262 EEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELKR 321

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++
Sbjct: 322 DATPEVVLNQLWRFTPMQTTFGCNMLALN-GGRPEQLTLRDFLIHFLTFREDVVARRTAY 380

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------------- 415
            ++    R  IL GL +A  N+DE++A IR+   P                         
Sbjct: 381 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 440

Query: 416 ------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   ++  EL  L A+      +L S +
Sbjct: 441 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 500

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK++F+       RRT   E +        + +IE+E + V I++ G+
Sbjct: 501 RIMAIISDELREVKDLFAVP-----RRTEISEWAGD---LEDEDLIEREDMVVTITSGGY 552

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 553 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 612

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S+G+      S+   
Sbjct: 613 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTN 672

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQ 690
             R GK  +K+     +  V      D V +V    + + F    +     R   GVR  
Sbjct: 673 VKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFPTTDVRVFSGRDSTGVRGI 732

Query: 691 SYKDGGISDVICFK---------------------------------------------- 704
               G     +                                                 
Sbjct: 733 RLASGDRVVSMSVIRHFEADPAERAAYLKQRRLMAGVTEEAEADEEEDAVEAGQLSPTRY 792

Query: 705 ---ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +    R   +  +     +  RGG G    +   R G+ ++S
Sbjct: 793 AEMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRGGQLVAS 844



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L ++++G   I    +     R G+            ++     V   D V +  
Sbjct: 798 AEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRGGQLVASFPVEMSDQVMLAT 857

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              + +   ++QI   SR   GVR+  +  G   +V+   
Sbjct: 858 SGGQSIRVPVEQISFRSRSAGGVRV--FDTGASEEVVSVA 895


>gi|90411889|ref|ZP_01219897.1| DNA topoisomerase IV subunit A [Photobacterium profundum 3TCK]
 gi|90327147|gb|EAS43519.1| DNA topoisomerase IV subunit A [Photobacterium profundum 3TCK]
          Length = 756

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 274/754 (36%), Positives = 448/754 (59%), Gaps = 25/754 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   TDVSMDGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ +E++L  + +   D+   ++   +EP + P++ P++L NG +GIAVGMA
Sbjct: 122 MRYTESRLSRFSEVLLSELGQGTADWVPNFDGTMNEPKMLPARLPHILLNGITGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  AA+ L+DNP+  +++L+E++ GPD+PT   I+     + + Y+ GRG
Sbjct: 182 TDIPPHNAREVANAAVHLLDNPKADLDELMEFVKGPDYPTEAEIITPVHDLKKVYKSGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SIRMRAIWHKENGD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIV+ P++  +D + LM  +F  +D+E  F +N+N+L +   P+V  L  I+ EWL 
Sbjct: 297 NPTRIVIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDGRPRVKGLLEIITEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIRNE+ PK  ++SRF L+  
Sbjct: 357 FRRSTVRRRLQYRLDKVVARLHILEGLLAAYLNIDEVIEIIRNEENPKAELMSRFELSVI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L KLEE +I+ E D L  E++ ++ LL S ++    I  EI+   E +
Sbjct: 417 QADAILEIKLRQLAKLEEIKIRGEQDELAKERDYLEKLLGSERRLSTLIKKEIQADAEKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E + A KA  ++ +I  E ITVV+S +GWIR  K + VD ++L +K
Sbjct: 477 GD-----DRRSPLVERAEA-KALTERDLIPSEAITVVLSEKGWIRHAKGYDVDPTSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+        +    +L+ +DG++Y L + +L S R  GE +   ++L    ++    
Sbjct: 531 SGDNYLAHARGKSNLPAILIGSDGRSYALESHSLPSARSQGEPVTGRLNLTPGTNLRQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
           + D     L+ S  G  FI + +++++  + GK  L V  + K+     ++    D + V
Sbjct: 591 MADDEQMWLMGSDAGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILV 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAG 716
           +    ++L+F I  +P++ +GKG ++ +        ++  +S +I     E +T   +  
Sbjct: 651 ITNEGRMLLFPIKDLPQLGKGKGNKIINIPSARSKSREEFLSQLIVLPQGEQVTI-HAGK 709

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R      +DL  + G+RG  G+++P+G     + 
Sbjct: 710 RKMGLKASDLDNFRGERGRRGTMLPRGLQNVTRL 743


>gi|239787276|emb|CAX83754.1| DNA topoisomerase IV subunit A [uncultured bacterium]
          Length = 765

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 325/736 (44%), Positives = 467/736 (63%), Gaps = 10/736 (1%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++  ++R  LE RYLAYALSTI  R++PD+RDG KPVHRRI+ AM  + LD G
Sbjct: 2   GAVTAEKIEPAAIRGELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPG 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           + FKKSAR+VG+VIGK HPHGDQ+ YD++VRLAQ F QRYPL+ GQGNFGN+DGD AAA 
Sbjct: 62  SGFKKSARVVGDVIGKFHPHGDQAAYDAMVRLAQDFAQRYPLVDGQGNFGNVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+T VA+ +L+ +D   VD   TY+    EPVV P++FPNLLANG +GIAVGM+T
Sbjct: 122 RYTEARLTPVAQALLEDLDRQTVDLIPTYDGSQEEPVVLPARFPNLLANGATGIAVGMST 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN  E+  AAL LI +P+  + +L++++ GPDFPTGG++V   E + E Y  GRGG
Sbjct: 182 AIPPHNAGEVLAAALHLIRHPDCGVAELMKHLPGPDFPTGGVLVAEPEELREVYATGRGG 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            R+RARW  E VG G+W +VVTEIPY VQK RLIE+IA+LI+ ++ P L D+RDES   V
Sbjct: 242 LRLRARWEQEMVGHGTWRLVVTEIPYHVQKGRLIERIAQLILDRKCPFLSDVRDESDAKV 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIVL P++R LDP+ +M  +F  SD+E R  +N+NV++    P+VM L G+L+ WL HR 
Sbjct: 302 RIVLEPRSRGLDPEKIMAFLFKNSDLEVRINVNLNVVTAEARPEVMDLKGLLRAWLDHRF 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           +V  RR++  ++ I  R+ +L+  L  +LNID +IAII+  D P P ++ RF +   Q +
Sbjct: 362 QVHTRRATHDLERIRERLHLLQAYLTVHLNIDAVIAIIKAHDDPAPALMQRFGMDSEQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           A+LNLRLR+LR+LEE  I+ E+    A   ++ ++L      W  +  E++  ++ FS  
Sbjct: 422 AVLNLRLRALRRLEEMSIRKEMGEKEARAAELSAMLADPTLMWAAVQDEVKRTRKEFSD- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRT     +        + +I+KEP+T V+S +GWI++LK H +DL  + FKE D
Sbjct: 481 ----GRRTRMAGPAPEI-DLRPEDLIQKEPLTAVLSRKGWIKALKGHDIDLEKIRFKEED 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            L+ A+  ++   +  L+  GK Y+L    L SG+  GE + +L +L+    I+     D
Sbjct: 536 GLERAVKGYSHQTVTFLAASGKVYSLLGDRLPSGKRFGEPLTVLFELDPGDRILWMLAVD 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
              +  V +  G  F +   +++AN R GK  + +   ++   V  V G  VA +   R+
Sbjct: 596 PEGEYFVTTRLGQGFRIRGRDLVANQRTGKQVVSLREGDQPLHVHPVRGAAVAAISHGRR 655

Query: 670 LLIFSIDQIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           LLI  +++ P + RGKGVR+Q+  +  G+ D + F    GL  +DS  R   R   +L  
Sbjct: 656 LLICRLEEFPLLGRGKGVRIQNLGRGEGLVDAMTFDPQAGL-VLDSGKR--TRQLTELDK 712

Query: 729 WLGKRGGVGSLVPKGF 744
           W G RG  G+++P GF
Sbjct: 713 WQGTRGSRGAMLPHGF 728


>gi|77463183|ref|YP_352687.1| DNA gyrase subunit A [Rhodobacter sphaeroides 2.4.1]
 gi|77387601|gb|ABA78786.1| DNA gyrase/topoisomerase IV, subunit A [Rhodobacter sphaeroides
           2.4.1]
          Length = 907

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 261/832 (31%), Positives = 404/832 (48%), Gaps = 107/832 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 10  QVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARP 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 130 PAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  V
Sbjct: 190 VVDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARV 248

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES      V+    R
Sbjct: 249 EEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELKR 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++
Sbjct: 309 DATPEVVLNQLWRFTPMQTTFGCNMLALN-GGRPEQLTLRDFLSHFLTFREDVVARRTAY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------------- 415
            ++    R  IL GL +A  N+DE++A IR+   P                         
Sbjct: 368 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 427

Query: 416 ------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   ++  EL  L A+      +L S +
Sbjct: 428 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 487

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK++F+       RRT   E +        + +IE+E + V I++ G+
Sbjct: 488 RIMAIISDELREVKDLFAVP-----RRTEISEWAGD---LEDEDLIEREDMVVTITSGGY 539

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 540 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 599

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S+G+      S+   
Sbjct: 600 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTN 659

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQ 690
             R GK  +K+     +  V      D V +V    + + FS   +     R   GVR  
Sbjct: 660 VKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGI 719

Query: 691 SYKDGGISDVICFK---------------------------------------------- 704
               G     +                                                 
Sbjct: 720 RLASGDRVVSMSVIRHFEADPAERAAYLKQRRLMAGVTEEAEADEEEDAVEAGQLSPTRY 779

Query: 705 ---ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +    R   +  +     +  RGG G    +   R G+ ++S
Sbjct: 780 AEMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRGGQLVAS 831



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L ++++G   I    +     R G+            ++     V   D V +  
Sbjct: 785 AEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRGGQLVASFPVEMSDQVMLAT 844

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              + +   ++QI   SR   GVR+  +  G   +V+   
Sbjct: 845 SGGQSIRVPVEQISFRSRSAGGVRV--FDTGASEEVVSVA 882


>gi|119714279|ref|YP_921244.1| DNA gyrase subunit A [Nocardioides sp. JS614]
 gi|119534940|gb|ABL79557.1| DNA gyrase subunit A [Nocardioides sp. JS614]
          Length = 922

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 223/794 (28%), Positives = 383/794 (48%), Gaps = 66/794 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V L+ +++  Y+ YA++ I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 22  RIEPVELQTSMQRAYIDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGFSKC 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VG+V+G+ HPHGD ++YD+LVRLAQP+V R PLI GQGNFG+   DSAAA RYTE R
Sbjct: 82  SRVVGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPLIHGQGNFGSPGNDSAAAMRYTECR 141

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ ++ED VDF+  Y+    EPVV P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 142 MAPLAMEMVRDINEDTVDFQPNYDGRSQEPVVLPARFPNLLVNGSAGIAVGMATNIPPHN 201

Query: 196 VQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ E A   +++P+ + E+L +     I GPDFP G  ++  R+ I ++YR GRG   
Sbjct: 202 LREVAEGARWALEHPDATREELQDALIERIKGPDFPNGA-LIVGRQGIEQAYRTGRGSIT 260

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
            RA   V+E  +G   +V+TE+PY V    L  KIAEL  + ++  + D+RD+ S    +
Sbjct: 261 QRAVIEVDEDAKGRTNLVITELPYMVNPDNLALKIAELADSGKVQGISDVRDDTSDRTGQ 320

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ ++   ++++T F  NM  L    VP+ + +D  +  W+ H+ +
Sbjct: 321 RLVVVLKRDAVARVVLNNLLKHTELQTNFSANMLALVD-GVPRTLAIDQFISNWVTHQID 379

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTENQ 427
           V+ RR+ +R+   ++R  +L+GL+ A   +DE+IA+IR                 + E Q
Sbjct: 380 VIRRRTEYRLAEAEKRAHVLRGLVKALDMLDEVIALIRRSPDVAEAREGLIALLDIDEVQ 439

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L  L+  +I  +L  + A    +  +L +  +Q   +A E+ E+ E + 
Sbjct: 440 ATAILDMQLRQLAALQRQKIIDDLAEIEARIADLKDILANVARQRQIVADELAEIVERYG 499

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                  RR+       AD     + +I  E + V I+  G+ +  ++            
Sbjct: 500 D-----DRRSQII---AADGDLSMEDLIPDEELVVSITRGGYAKRTRADQYRTQRRGGKG 551

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +     +  D ++  +       +L  +T G+ Y   A NL       +   +  L+   
Sbjct: 552 VRGATLRGDDVVEHFIATTNHHWLLFFTTAGRVYRTKAYNLPEASRDAKGGHVAGLLSFQ 611

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLV 653
            +++I        YD    L++ +  G        +  +  + G   +     ++++   
Sbjct: 612 PDENIAQVLAIRDYDQAPYLVLATRDGLVKKTRLGDYNSPRQAGVIAINFRSEDDELIGA 671

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEG- 708
             V   DH+ +V    + + F  D   +  M R   GV    ++DG     +        
Sbjct: 672 ELVNPEDHILLVSRKGQSVRFQADDSQLRPMGRATGGVTGMKFRDGDSLLSMSVIRAAQV 731

Query: 709 ----------------------------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                                                 + +        +  RGG+G   
Sbjct: 732 EAEEAAEASGESVEEMAETRGQWFGLHPQYVFTITDGGFAKRTQIPEYRVQSRGGIGIRA 791

Query: 741 PKG-FPRSGKFLSS 753
            K      G+ + +
Sbjct: 792 MKLANEDRGELVGA 805



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEE--KMKLVVKV-TGDHVAVVGE 666
             +  ++  G A   +  E    +R G     +K+++E+  ++     V  GD +  +  
Sbjct: 760 QYVFTITDGGFAKRTQIPEYRVQSRGGIGIRAMKLANEDRGELVGAFIVEDGDEILSITS 819

Query: 667 NRKLLIFSIDQ-IPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             +++   ID+      R   GV+  + K G    V+   +   
Sbjct: 820 GGQVVRSPIDENFRPTGRSTMGVKFVTPKKGDSVAVVARSVEAN 863


>gi|126462055|ref|YP_001043169.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17029]
 gi|126103719|gb|ABN76397.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17029]
          Length = 907

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 261/832 (31%), Positives = 404/832 (48%), Gaps = 107/832 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 10  QVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKSARP 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 130 PAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  V
Sbjct: 190 VVDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARV 248

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES      V+    R
Sbjct: 249 EEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELKR 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++
Sbjct: 309 DATPEVVLNQLWRFTPMQTTFGCNMLALN-GGRPEQLTLRDFLSHFLTFREDVVARRTAY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------------- 415
            ++    R  IL GL +A  N+DE++A IR+   P                         
Sbjct: 368 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 427

Query: 416 ------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   ++  EL  L A+      +L S +
Sbjct: 428 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 487

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK++F+       RRT   E +        + +IE+E + V I++ G+
Sbjct: 488 RIMAIISDELREVKDLFAVP-----RRTEISEWAGD---LEDEDLIEREDMVVTITSGGY 539

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 540 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 599

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S+G+      S+   
Sbjct: 600 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTN 659

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQ 690
             R GK  +K+     +  V      D V +V    + + FS   +     R   GVR  
Sbjct: 660 VKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGI 719

Query: 691 SYKDGGISDVICFK---------------------------------------------- 704
               G     +                                                 
Sbjct: 720 RLASGDRVVSMSVIRHFEADPAERAAYLKQRRLMAGVTEEAEADEEEDAVEAGQLSPTRY 779

Query: 705 ---ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +    R   +  +     +  RGG G    +   R G+ ++S
Sbjct: 780 AEMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRGGQLVAS 831



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L ++++G   I    +     R G+            ++     V   D V +  
Sbjct: 785 AEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRGGQLVASFPVEMSDQVMLAT 844

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              + +   ++QI   SR   GVR+  +  G   +V+   
Sbjct: 845 SGGQSIRVPVEQISFRSRSAGGVRV--FDTGASEEVVSVA 882


>gi|307611863|emb|CBX01579.1| DNA topoisomerase IV, A subunit [Legionella pneumophila 130b]
          Length = 751

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 278/746 (37%), Positives = 428/746 (57%), Gaps = 25/746 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E  +   L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +
Sbjct: 7   MNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVGMA+ I
Sbjct: 127 TEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y  G G  +
Sbjct: 187 LPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYESGNGSIK 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA +  E+       IV+T +PYQV  +R++E+IA  +  K++P++ED+RDES  +   
Sbjct: 247 MRAIYTQEK-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL EWL  R 
Sbjct: 302 RLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILTEWLEFRL 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  ++PK  ++SRF+LTE Q +
Sbjct: 362 ATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFNLTERQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + ++ F   
Sbjct: 422 AILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHFLLKELVKEEITKDRDEFGDP 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+         +A  ++ ++  EPITVV+S  GW+R+ K H VD   L +K GD
Sbjct: 482 -----RRSPII-TREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGKELSYKAGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K    A T  ++L    +GK Y+LP   L S RG GE +   ++             +
Sbjct: 536 EFKAQTLARTNQQVLFFDGEGKVYSLPGHVLPSARGQGEPLTGKLNPAEGVLFEAIVGGE 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGE 666
              K+L+ +  G  FI +  ++    R GK  +K+S    +     +       VA    
Sbjct: 596 PEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATN 655

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSY 719
             +LLIFS++++PE+SRGKG +L S        ++  I D+      + LT   +  R +
Sbjct: 656 VGRLLIFSLEELPELSRGKGNKLISIPAAKAVSREEYIVDMQVLTTNDSLTV-YAGKRHF 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
                DL  + G+RG  G+ +P+G  
Sbjct: 715 TLKGEDLTHYKGERGRRGNRLPRGLQ 740


>gi|307824022|ref|ZP_07654249.1| DNA topoisomerase IV, A subunit [Methylobacter tundripaludum SV96]
 gi|307734806|gb|EFO05656.1| DNA topoisomerase IV, A subunit [Methylobacter tundripaludum SV96]
          Length = 743

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 271/750 (36%), Positives = 434/750 (57%), Gaps = 22/750 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +++ N + + L+   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A 
Sbjct: 2   IMQGNFEQLPLKDFAEKAYLDYSMYVILDRALPNIADGLKPVQRRIVYAMSELGLTATAK 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   S AA R
Sbjct: 62  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQDFSYRYPLVDGQGNWGSPDDPKSFAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+T  A+ +L  + +  VD+ D ++    EPV+ P++ PN+L NGT GIAVGMAT 
Sbjct: 122 YTESRLTAYAQTLLSELGQGTVDWADNFDATLKEPVLLPARLPNILLNGTMGIAVGMATD 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+  A + L+D+P  +++ L  +I GPD+PT   I+ S E I + Y  G G  
Sbjct: 182 IPPHNLREVANACIQLLDDPNSTLDMLFTHIKGPDYPTDAEIITSAEDIQKMYVSGGGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           ++RA++  E+       IV+T +P+QV  ++L+E+IA  ++AK++P++ED+RDES  +  
Sbjct: 242 KMRAKYEQEDGN-----IVITALPHQVSGAKLLEQIAAQMLAKKLPMIEDLRDESDHENP 296

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+++ P+++ +D D +M  +F  +D+E  + +NMN++ +   P+V  L  IL EWLA R
Sbjct: 297 TRLLVIPRSKRIDADEVMSHLFATTDLEKSYRVNMNMIGLDGRPKVKGLRDILVEWLAFR 356

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            E + +R  +R+  +  R+ IL GLLIAYLNIDE+IAIIR+ED PKPV++ RF +T+ Q 
Sbjct: 357 TETVRKRLQYRLDKVLARLHILDGLLIAYLNIDEVIAIIRSEDHPKPVLMERFGITDIQT 416

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E+  ++  L S +     I  E+    E +  
Sbjct: 417 EAILELKLRHLAKLEEMKIRGEQDELELERAALEKTLGSPRLLNRLIRKELERDAEKYGD 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+       A +A    A+I  EP+TV++S +GWIR+ K H +D+++L+++ G
Sbjct: 477 -----DRRSPIV-ARDAAQALETTALITNEPLTVILSEKGWIRAAKGHDIDVASLNYRSG 530

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D    A+   TT  + +L + G+AY+    +L S R  GE +   ++       +     
Sbjct: 531 DGFLDAVKCRTTQPVYILDSTGRAYSTATHDLPSARTQGEPLTGRLNPPPGSLFLHLLAG 590

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGE 666
                 ++ S  G  F V+  E+++  + GK  + +    K+     +    D +AVV  
Sbjct: 591 QPDDWYVLASHFGYGFRVQLKELLSKNKAGKLLITLPDGAKVLKPTPIRSEADSLAVVTL 650

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI------SDVICFKICEGLTWIDSAGRSYN 720
             +LLIF + ++P +++GKG +L       +                G   I +  R   
Sbjct: 651 QGRLLIFPVAELPALAKGKGNKLIQIPTADLTAGKDYVIAAVALPENGQLKIIAGKRQLT 710

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               D+  +   R   G  +P+GF R    
Sbjct: 711 LKGADVEHYSAGRAKRGLALPRGFQRVDGL 740


>gi|161898747|ref|YP_191315.2| DNA gyrase subunit A [Gluconobacter oxydans 621H]
          Length = 930

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 250/835 (29%), Positives = 380/835 (45%), Gaps = 103/835 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   +   YLAYA+S I  RA+PD+RDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 1   MTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGDS AA RYTEAR+ + 
Sbjct: 61  GDVMGKYHPHGDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKA 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++ D VDF+  Y+E ++EP V P+ FPNLL NG +GIAVGMAT+IP+HN  E+
Sbjct: 121 SSFLLDDIERDTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LA+I NP I +++L++ I GPDFPTGG I+  R  I  +Y  GRG   VRAR  +E
Sbjct: 181 IDATLAMIANPAIELDELMQIIPGPDFPTGG-IIMGRSGIRRAYETGRGSIPVRARAEIE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +    I++TEIPYQV K+ L EKIA+L+ +K I  + DIRDES      V+    R 
Sbjct: 240 EIRKDRQAIIITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             PD+++  ++  + ++T F  NM  L     P+ M L  IL+ +L  R EV+ RR+ F 
Sbjct: 300 ATPDVVLNQLYRFTQLQTSFSANMLALDD-GKPRTMGLKDILEAFLRFREEVILRRARFD 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----------------- 422
           +     R  +L GL++A  NIDE+IA+IR          S  +                 
Sbjct: 359 LNKARDRGHLLVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHD 418

Query: 423 -----------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                      LTE Q   IL LRL+ L  LE  +I+ EL  +  +  ++ +++ S  ++
Sbjct: 419 EGNVIIDGKVRLTEAQARGILELRLQRLTGLEREKIQGELGEVAQKIGELLAIIESRPRR 478

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              +  E+   +   +             +   +     Q  +       +  +     R
Sbjct: 479 MEVMREELLAARAEVATPRVTEISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFR 538

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--A 589
           S        +A   +  D +  + +AHT   ++  S+ GKAY +   +L       +  A
Sbjct: 539 SQNRGGRGRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHLPEAAPTAKGRA 598

Query: 590 IQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           +  L+       I                 L   ++ GN      S+       G   +K
Sbjct: 599 LVNLLPELGTDSITAVLPLPQDEELWEDLHLAFATASGNVRRNRLSDFRNIRASGLIAMK 658

Query: 644 VSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEM-SRG-KGVRLQSYKDGGIS 698
           +   + +  V     G  V +  +N + + F I    +     RG  GVR     +G   
Sbjct: 659 LDEGDSLIGVATCREGQDVFLATKNARCIRFQITDETLRVFAGRGSTGVRGIRLGEGDAV 718

Query: 699 DVICF------------------------------KICEGLTW------IDSAG------ 716
             +C                                  E  T       ++  G      
Sbjct: 719 ISLCILNHVDASVEERAAYLRMANAKRRAENAALDDSAEDETVSGDEETVEITGDLTQER 778

Query: 717 ----------------RSYNRSENDLLGWLGKRGGVGSLVPKGF-PRSGK-FLSS 753
                             + R  +     +  RGG G         R GK  + +
Sbjct: 779 FEELEQQEEILLTVTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGT 833



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 8/101 (7%)

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-----SSEEKMKLVVKV-TGDHVAVVGENRKL 670
           V+  G        +   + R G+    +        +++   +    G  V +V +  +L
Sbjct: 792 VTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDGTDVMLVTDTGRL 851

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           +   + Q+  MSR   GV L    D     +  F + E  T
Sbjct: 852 IRLPVSQVRVMSRQASGVTLFRLNDTETV-ICVFPVLEDDT 891


>gi|224531893|ref|ZP_03672525.1| DNA gyrase, A subunit [Borrelia valaisiana VS116]
 gi|224511358|gb|EEF81764.1| DNA gyrase, A subunit [Borrelia valaisiana VS116]
          Length = 810

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 421/760 (55%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AF
Sbjct: 6   NKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYT
Sbjct: 66  KKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++ E I++ +D++ V+F+  Y++  +EP + PS FP LL NG+SGIAVGMAT++ 
Sbjct: 126 EAKMERITEYIVKDIDKETVNFKPNYDDSLTEPEIMPSSFPFLLVNGSSGIAVGMATNMA 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +
Sbjct: 186 PHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   +
Sbjct: 245 RARYHIEERTEDKKAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP ++M  ++  ++ +  F +N   L    +P+ + L+ +L E++ HR+ ++
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALV-NGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDEII II++       K  +V+ F L+E Q +
Sbjct: 364 ERRVEFDLRKAKDKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLVANFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           ++L+++L+ L  LE ++++ E + LL+  +  +++L +  +  N I  E   +   F   
Sbjct: 424 SVLDMKLQKLTALEIFKLEDEFNVLLSLIKDYENILLNPARIINIIREETINLGLKFGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    +++KE I V+++ +G+++ L  +           LS
Sbjct: 484 -----RRTKII-YDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHN 599
           +    +GD + IAL  +T D + ++S +GK Y + A  +       +   +   I+L   
Sbjct: 538 SFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDR 597

Query: 600 QDIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+T      +     LL+ ++ G     E ++      +G   +K++ ++ +     V
Sbjct: 598 EEILTIKNSKDFTDDAYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIV 657

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             D  V  + +     IF+   +   +RG +GV     K+G +  V    + E    +  
Sbjct: 658 FKDEKVICISKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLAVRENPYLLII 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
           +   Y +  +       KRG  G    K   +  G  + +
Sbjct: 717 SENGYGKRLSISKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 7/184 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                      S  +  +   + D +  A      ++++ +S  G A+   + ++     
Sbjct: 626 RFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICISKKGSAFIFNSRDVRLTNR 685

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
             + +  +  L      V          LL++S  G    +  S+I    R    +    
Sbjct: 686 GTQGVCGM-KLKEGDLFVKVLAVRENPYLLIISENGYGKRLSISKISELKRGATGYTSYK 744

Query: 646 SEEK-----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             +K     +  +     D + +V +  K L     ++ E  +  +G+++    +  +  
Sbjct: 745 KSDKKAGSVVDAIAVSENDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLIS 804

Query: 700 VICF 703
           V  F
Sbjct: 805 VSKF 808


>gi|183597857|ref|ZP_02959350.1| hypothetical protein PROSTU_01191 [Providencia stuartii ATCC 25827]
 gi|188022617|gb|EDU60657.1| hypothetical protein PROSTU_01191 [Providencia stuartii ATCC 25827]
          Length = 752

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 265/747 (35%), Positives = 442/747 (59%), Gaps = 23/747 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEITHDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  +    VD+   ++   +EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELAHGTVDWIPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+ +A +AL+D P +S++ ++ Y+  PDFPT   I+ SRE I + Y+ GRG
Sbjct: 182 TDIPPHNAREVAQALVALLDKPTLSLDDIMSYVPAPDFPTEAEIISSREDIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAVWEKEDGNA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW+ 
Sbjct: 297 NPTRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKGLVDILNEWIV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ +  R + R++ + RR+ IL GLLIAYLNIDE+I IIR ED+PKPV++SRF+L++ 
Sbjct: 357 YRRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRTEDEPKPVLMSRFNLSDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L+ E++++ S+L S ++    I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELIKERDELQSILGSERKLNTLIKKEIQADAKAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A   +  + ++  EPITVV+S  GW+RS K H ++ S L++K
Sbjct: 477 GDE-----RRSPLREREEAKALSEHE-ILPSEPITVVLSEMGWVRSAKGHDIEPSNLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS K A    T   ++ L T G++Y++    L S R  GE +   + L     +    
Sbjct: 531 AGDSFKGAARGKTNQPVVFLDTTGRSYSVDPLELPSARSQGEPLTGRLSLPPGATVEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAV 663
           +     K L+ S  G  FI   ++++   + GK  + +    K+   +++  +    +  
Sbjct: 591 MAQDEQKYLMASDAGYGFICTFNDLVTKNKTGKALINLPDNAKILTPIEINNEQEDVLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY------KDGGISDVICFKICEGLTWIDSAGR 717
           + +  ++L+F +  +P++S+GKG ++ +           +   +     +    +    R
Sbjct: 651 ITKAGRMLMFPVADLPQLSKGKGNKIINITGAQAASGEDLLVWLLVLPAQASITLYFGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                  +L  +  +RG  G+ +P+G 
Sbjct: 711 KLRLKSEELQKYRAERGRRGTSLPRGL 737


>gi|260913632|ref|ZP_05920108.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pasteurella dagmatis ATCC
           43325]
 gi|260632171|gb|EEX50346.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pasteurella dagmatis ATCC
           43325]
          Length = 752

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 278/749 (37%), Positives = 442/749 (59%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           NT+  E ++   LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   NTINYEGIEQTPLREFTEKAYLNYSMYVILDRALPFIGDGLKPVQRRIIYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKIAEVLLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ LIDNP+ +++ LL  + GPD+PT   I+ S++ I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLIDNPKATLDDLLTVVQGPDYPTEAEIISSKDDIRKLYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       IV+T +P+Q   S++I +IA+ + AK++P++EDIRDE+  +
Sbjct: 242 SVRMRAVWKKEDGE-----IVITALPHQSSPSKVIAQIADQMTAKKLPMVEDIRDEADHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +RIV+ P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 SPIRIVIVPRSNRVDCDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKSLVEILTEWLQ 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR   R+  +  R+ IL GL+IAYLNIDE+I IIRNED+PK V+++RF+LT+ 
Sbjct: 357 FRRTTVTRRLQHRLDKVLARLHILDGLMIAYLNIDEVIQIIRNEDEPKQVLIARFNLTDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILNLRLR L KLEE+++++E D L  E++ +   L S ++    I  EI++  + +
Sbjct: 417 QAEAILNLRLRHLAKLEEHELQAEKDRLEEERDSLQLTLGSERRLNGLIKKEIQQDAKTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E + A KA  +  M   EP+TV++S  GW+R  K H +D+  + +K
Sbjct: 477 TSP-----RLSPLVERAEA-KAISESDMTPAEPVTVILSEMGWVRCAKGHDIDVQNISYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD      +  +    + + + G++Y L    L S R  GE +   + L     +    
Sbjct: 531 AGDKYLAHAYGKSNQAAVFIDSTGRSYALDPLTLPSARSQGEPLTGKLTLPAGASVEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-- 664
           +      LL+ S  G  FI +  +++A  + GK  + +    ++   +K+T +   +V  
Sbjct: 591 IETENQPLLMASDAGYGFICKFEDLVARNKAGKALISLPENARVLPPLKLTNETALLVAL 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DSAGRS 718
               ++LIF    +P +++GKG ++ +      KD     V    I E  T +  S  R 
Sbjct: 651 TSAGRMLIFPAKDLPSLAKGKGNKIVTIPAVNAKDRSELLVRLLLIEESSTLVFHSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 +L  +  +RG  G+ +P+G   +
Sbjct: 711 VTLKPEELQKFRAERGRKGTQLPRGLHSN 739


>gi|329890203|ref|ZP_08268546.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568]
 gi|328845504|gb|EGF95068.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568]
          Length = 913

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 243/847 (28%), Positives = 388/847 (45%), Gaps = 115/847 (13%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +   ++  +++   L+  YL YA+S I  RA+PD RDG KPVHRRI+++M ++ +    A
Sbjct: 1   MAPGDISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K AR+VG+V+G+ HPHGD SVY +LVR+AQ F     L+ GQGNFG++DGD  A+ RY
Sbjct: 61  YSKCARVVGDVLGRFHPHGDASVYMALVRMAQDFSMGLMLVDGQGNFGSVDGDMPASMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M   A  +L  +D+D VDF+  Y+E++ EPVV P++ PNLL NG  GIAVGMAT+I
Sbjct: 121 TEAKMAPAAVALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+AL+D+P++S + LL+ + GPDFPTGG I   R +   + R GRG   
Sbjct: 181 PPHNLREVIDAAVALLDDPDVSDDALLDIVPGPDFPTGGEI-MGRTAPRNALRDGRGSVI 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR +  +EE+ +    I++TE+P+QV K  LIE+IAE++  KR+  + D+RDES      
Sbjct: 240 VRGKASIEEIRKDRDAIIITELPFQVNKQTLIERIAEMVREKRLEGIADVRDESDRLGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R    D+++  ++  + +++ F +NM  L+    P+ M L  +L+ +L  R EV
Sbjct: 300 IVIELKRDASGDVILNQLYRYTALQSSFGVNMLALNH-GRPEQMGLRKLLELFLDFREEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419
           + RR  F +     R  +L GL +A  NIDE+I IIR+   P                  
Sbjct: 359 VVRRVKFELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMM 418

Query: 420 -----------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                            +  LT+ Q  AIL L L  L  L    I  E   L    +   
Sbjct: 419 ALVELIADPRTVLVEGDKIRLTDEQARAILALTLSRLTGLGRDDIFGEARTLADTIQGHL 478

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           ++L+  K     I  ++  VK+ F        RRT   E     +    + +I +E + V
Sbjct: 479 TILSDRKNVLAIIREDLLLVKDQFG-----VDRRTLIGEGDAEME---DEDLIPREDMVV 530

Query: 523 VISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +++ G+++                 S +  K+ D +     A T   +L  +T+GKAY 
Sbjct: 531 TVTHSGYVKRVALNAYRTQHRGGKGRSGMAMKDEDVVTSVFSASTHTPVLFFATNGKAYK 590

Query: 575 LPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIV 626
           L    L   + +  G+A   L+ +     I+                ++  +  G+    
Sbjct: 591 LKTWRLPLGNPQSRGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATQSGDVRRN 650

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE-MSR- 683
           + S+     R GK  +K+   + M  V   T  D V +     + + F  D +     R 
Sbjct: 651 KLSDFATVNRAGKIAMKLEDGDGMVGVGLCTAEDDVLLTTALGRAIRFKADDVRVFKGRD 710

Query: 684 GKGVRLQSYKDGGIS-------------------------------------DVICFKIC 706
             GVR    +DG                                        DV+  +  
Sbjct: 711 STGVRGIRLQDGDTVISMAILGRVDATPEERAAYVKHANAMRKALAGADAEEDVVTVEAD 770

Query: 707 EGLT-------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           +                       +      + +  +        RGG G        R+
Sbjct: 771 DEEAGDAALSVERIAELGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRA 830

Query: 748 G-KFLSS 753
           G +  ++
Sbjct: 831 GTRLAAA 837



 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKV--SSEEKMKLVVKVTG-DHVAVV 664
           +   +L V+  G        E     R G   T   +   +  ++     V   D + +V
Sbjct: 790 AEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGTRLAAAFPVEESDDLMLV 849

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +  +++   + Q+  + R  +GV +  ++ G    V+  +
Sbjct: 850 TDGGQMIRTPVSQVRIVGRSSQGVTI--FRTGKDEKVVSVE 888


>gi|154508247|ref|ZP_02043889.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797881|gb|EDN80301.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC
           17982]
          Length = 867

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 231/784 (29%), Positives = 391/784 (49%), Gaps = 43/784 (5%)

Query: 1   MGVDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  +  +N+  + + E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++
Sbjct: 1   MSDEQTTNARHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G    ++F KS+R+VGEV+G  HPHGD ++YD+L RL QP+  RYPL++GQGNFG
Sbjct: 61  AMYDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
                  AA RYTE +M  +A  +++ +DE+ VDF+D Y+  + EP + P++FPNLLANG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEVVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVES 235
           + GIAVGMAT IP HN++E+       +++P+ S E+    L++ I GPDFPTG  I+  
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATIL-G 239

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
            + I ++YR GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+    I
Sbjct: 240 HKGIEDAYRTGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGAI 298

Query: 296 PLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + DIRDE++    + ++    R     +++ +++  + ++  F  NM  L    VP+ 
Sbjct: 299 GGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVD-GVPRT 357

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           + +DG ++ W+ H+ +V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR      
Sbjct: 358 LSIDGFIRHWINHQIDVIVRRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVD 417

Query: 415 PVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                 +    +   Q DAIL L+LR L  LE  +I  E   L A  + ++ +L   ++Q
Sbjct: 418 EARAGLIELLDVDAIQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDILAKPERQ 477

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I+ E+ E+ + F        RRT              + +I +E + V I+  G+ +
Sbjct: 478 RAIISAELGEIVDKFGDE-----RRTRILPFDGEMS---MEDLIPEEDVVVTITRDGFAK 529

Query: 532 S--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                     K     +     +  D ++      T + +L  +  G+ Y   A  +  G
Sbjct: 530 RTRTDNYRSQKRGGKGVRGTQLRGDDVVEHFFVTTTHNWLLFFTNLGRVYRAKAYEIPEG 589

Query: 584 RGHGE--AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
               +   +  L+    ++ I        Y+    L++ + +G       S   +    G
Sbjct: 590 GRDAKGQHVANLLAFQPDEHIAQVLAIRTYEDADFLVLATKRGLVKKTPLSLYNSPRSGG 649

Query: 639 KTFLKVSSE-----EKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRL 689
              + +  +     +++     +   + + +V  + + + F  + DQ+  M R   GVR 
Sbjct: 650 IIAINLREDEDGKPDELVSAQTIMADEDLILVSRDGQAVRFTATEDQLRSMGRSTSGVRG 709

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
             ++ G    +      +    +      Y +           RG +G  V K     G 
Sbjct: 710 MKFR-GDDELLSMEVPRDNTDLLIVTESGYAKRTPVDEYPTKSRGTLGVRVGKLVDERGG 768

Query: 750 FLSS 753
            + +
Sbjct: 769 LVGA 772



 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 9/140 (6%)

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +RS+   +  +  + F+  D L           +L+++  G A   P     +     
Sbjct: 695 DQLRSMGRSTSGVRGMKFRGDDELLSMEVPRDNTDLLIVTESGYAKRTPVDEYPTKSRGT 754

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             +++   ++    +V A V      ++V++  G    V  S++    R     +     
Sbjct: 755 LGVRVGKLVDERGGLVGALVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVI----- 809

Query: 648 EKMKLVVKVTGDHVAVVGEN 667
                     GD +  +  N
Sbjct: 810 ----FARPDEGDRIIAITRN 825


>gi|54307669|ref|YP_128689.1| DNA topoisomerase IV subunit A [Photobacterium profundum SS9]
 gi|46912092|emb|CAG18887.1| putative DNA topoisomerase IV [Photobacterium profundum SS9]
          Length = 756

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 274/754 (36%), Positives = 446/754 (59%), Gaps = 25/754 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   TDVSMDGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ +E++L  + +   D+   ++   +EP + P++ P++L NG +GIAVGMA
Sbjct: 122 MRYTESRLSRFSEVLLGELGQGTADWVPNFDGTMNEPKMLPARLPHILLNGITGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  AA+ L+DNP   +++L+ ++ GPD+PT   I+     + + Y  GRG
Sbjct: 182 TDIPPHNAREVANAAVHLLDNPTADLDELMRFVKGPDYPTEAEIITPTHDLKKVYATGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SIRMRAIWHKENGD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIV+ P++  +D + LM  +F  +D+E  F +N+N+L +   P+V  L  I+ EWL 
Sbjct: 297 NPTRIVIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDGRPRVKGLLEIITEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GLL AYLN+DE+I IIRNE+ PK  ++SRF L+  
Sbjct: 357 FRRSTVRRRLQYRLDKVVARLHILEGLLAAYLNLDEVIEIIRNEENPKAELMSRFDLSVI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L KLEE +I+SE D L  E++ +D LL S ++    I  EI+   E +
Sbjct: 417 QADAILEIKLRQLAKLEEIKIRSEQDELAKERDYLDKLLGSERRLSTLIKKEIQADAEKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E + A KA  ++ +I  E ITVV+S +GWIR  K + VD ++L +K
Sbjct: 477 GD-----DRRSPLVERAEA-KALTERDLIPSEAITVVLSEKGWIRHAKGYDVDPTSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+        +    +L+ +DG++Y L + +L S R  GE +   ++L    ++    
Sbjct: 531 SGDNYLAHARGKSNLPAILIGSDGRSYALESHSLPSARSQGEPVTGRLNLTPGTNLRQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
           + D     L+ S  G  FI + +++++  + GK  L V  + K+     ++    D + V
Sbjct: 591 MADDEQMWLMGSDAGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILV 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAG 716
           +    ++L+F I  +P++ +GKG ++ +        ++  +S +I     E +T   +  
Sbjct: 651 ITNEGRMLLFPIKDLPQLGKGKGNKIINIPSARSKSREEFLSQLIVLPQGEQVTI-HAGK 709

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R      +DL  + G+RG  G+++P+G     + 
Sbjct: 710 RKMGLKASDLDNFRGERGRRGTMLPRGLQNVTRL 743


>gi|307544311|ref|YP_003896790.1| DNA topoisomerase IV subunit A [Halomonas elongata DSM 2581]
 gi|307216335|emb|CBV41605.1| DNA topoisomerase IV subunit A [Halomonas elongata DSM 2581]
          Length = 752

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 282/759 (37%), Positives = 434/759 (57%), Gaps = 25/759 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S    + E +V+ +SLR   E+ YL Y++  I +RA+P + DG KPV RRI++AM E+ 
Sbjct: 1   MSMDIQVAEGDVERLSLREYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELA 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   
Sbjct: 61  LSANAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  + +  VD+   ++   +EPVV P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFAEVLLSELGQGTVDWAPNFDGTMNEPVVLPARLPHVLLNGGTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV E+ EA   L+  PE +  +L+ ++ GPDFP+   I+     + + Y 
Sbjct: 181 VGMATDIPPHNVGEVVEATCHLLRQPEATTAELMAHLPGPDFPSAAEIITPASDLRKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  +VRAR+  EE       +V+T +PYQV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 NGRGSVKVRARFVREEGN-----VVITALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E    +NMNV+ +   P+V+ L G+L 
Sbjct: 296 STHEEPTRLVIEPRSNRVDVESLMAHLFATTDLEKNIRVNMNVIGLDGRPRVLSLAGLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR   R+  ++ R+ IL+GLL AYLNIDE+I IIR ED+PKP ++  F 
Sbjct: 356 EWLDFRRSTVRRRLEHRLGKVEDRLHILEGLLAAYLNIDEVIRIIREEDEPKPALMEAFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL LRLR L KLEE +I+ E D L  E++++  LL +     + I  E+R  
Sbjct: 416 LSERQAEAILELRLRHLAKLEEMKIRGEQDELEEERKRLKELLGNEAALTDLIERELRAA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR    E   A   +  + +    P+TVV+S +GWIRS K H +D + 
Sbjct: 476 GEEYGDP-----RRAPIVEREEARALSEVELVGAD-PVTVVLSEKGWIRSAKGHDIDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD   +A    T   ++LL   G+AYTL A NL S R  GE +   +++     +
Sbjct: 530 LSYKAGDRFALAARGKTNQPLVLLDDTGRAYTLTAHNLPSARSQGEPVTGRVNVAAGAHM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +   T + L+ S  G  FI     +   ++ GK  L V     +   + V      
Sbjct: 590 AGVMLGPPTTRYLLASDGGYGFIAPLEALTGKSKSGKGVLSVPKGCNVLAPLMVPEGEGI 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            VA V    +LL+F +DQ+PEM++GKG ++          ++  + D+      + L  +
Sbjct: 650 SVAAVSNEGRLLVFPLDQLPEMAKGKGNKMIDIPGARAARREEFLRDLTLLGPGQAL-VV 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  R       DL  + G RG  GS +P+G  +  +  
Sbjct: 709 QAGKRKLTLKAGDLDYYRGDRGRRGSKLPRGLQKVDRLA 747


>gi|303251555|ref|ZP_07337729.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649553|gb|EFL79735.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 748

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 265/748 (35%), Positives = 442/748 (59%), Gaps = 23/748 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   STEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGM
Sbjct: 122 AMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+
Sbjct: 182 ATDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGK 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  
Sbjct: 242 GSIKMRAVWKKEDGE-----IVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIVL P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E
Sbjct: 357 VFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + 
Sbjct: 417 AQAEAILNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKA 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L +
Sbjct: 477 FASP-----RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD      +  +   ++ L + G+AY L   +L S R  GE +   I L     +   
Sbjct: 531 RAGDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVA 662
            + +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    + 
Sbjct: 591 LMANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLV 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWIDSAG- 716
            +    ++L+F I ++P++S+GKG ++ +      K+G         +    + +  +G 
Sbjct: 651 AMSSVGRMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFVSGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           R      +D+  + G+R   GS + +G 
Sbjct: 711 RKITLKPSDIDNYRGERARKGSQLVRGL 738


>gi|182412482|ref|YP_001817548.1| DNA gyrase, A subunit [Opitutus terrae PB90-1]
 gi|177839696|gb|ACB73948.1| DNA gyrase, A subunit [Opitutus terrae PB90-1]
          Length = 830

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 251/769 (32%), Positives = 390/769 (50%), Gaps = 42/769 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E + + ++   ++  Y+ Y++S I  RA+PD RDG KPV RR+++AM   GL    AF 
Sbjct: 5   SEKLSSANITDIMQTAYIDYSMSVIISRALPDARDGLKPVQRRVLYAMLREGLLHNRAFD 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A +VGEV+   HPHGD SVYD+LVR+AQP+V RYPLI  QGNFG++DGD AAAYRYTE
Sbjct: 65  KCAGVVGEVLKNYHPHGDSSVYDTLVRMAQPWVMRYPLIDPQGNFGSVDGDPAAAYRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+  +AE +L+ ++ED VDF   Y E  +EP V P+  PNLL NG++GIAVGM T+IP 
Sbjct: 125 CRLNAIAEDLLRDIEEDTVDFAPNYKESTTEPTVLPAALPNLLMNGSTGIAVGMTTNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +A  A+IDNP IS+++L   + GPDFPTGG+I   RE I+   + G+G  R R
Sbjct: 185 HNLAEIIDATCAIIDNPRISVDELCTIVQGPDFPTGGVIA-GREGILSYLKTGKGIVRTR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +   EE+  G   IVVTEIPY V ++ L+ +IAEL+  K+I  + D+RDES E+ RIV 
Sbjct: 244 GKAHTEEMKGGMEQIVVTEIPYNVNRATLVTRIAELVGDKQIDGIRDLRDESDENTRIV- 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++  +F  + +E+ F + +  L   + P+ M +  +++ ++ HRREV+ 
Sbjct: 303 IELKRGEQSKVVINQLFQKTALESSFGVTLLALDK-KRPKQMNIKELIECYIEHRREVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDA 430
           RR+ FR++  + R  IL+G +IA  N+D+ + IIR     +     +++++ L+E Q DA
Sbjct: 362 RRTRFRLKQAEDRAHILEGYIIALDNLDDFVKIIRASQNREEAKVRLMAKYPLSERQTDA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRL  L  LE  +I++E   L+   E++  +L S  +    I  E+ E+KE ++   
Sbjct: 422 ILELRLYQLTGLERGKIEAEYLELMKLIEELRGILESEPKLLALIKKELAEMKEKYTSP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT       A      + +I  E   + +S+ G+I+          +     +  
Sbjct: 481 ----RRTEII---AAAGEFRMEDVIPNEGCVITVSHLGFIKRTPVAEYRSQRRGGKGVIG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
               E D +     A T D IL  ++ G+ +     ++        G+++   + L   +
Sbjct: 534 AETYEEDFVANLFTASTHDYILFFTSIGQCHAKKVYDIPEGTRASKGKSVSSFLRLAEGE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKV 656
            I        +     L+  + +G       S+    TR  G   + +   + +   V  
Sbjct: 594 KIAAMLCVKDFAEDRYLVTATKRGIIKKSALSDYANATREGGLIGINLQEADSVIGTVLT 653

Query: 657 TGD-HVAVVGENRKLLIFSIDQ-------IPEMSRGK-GVRLQSYK-DGGISDVICFKIC 706
           TG+  + +V      + F                R   GV    +K      DVI     
Sbjct: 654 TGENELILVSHQGLAVRFRERDPESGEELFRATGRATGGVTGMRFKLKSDYLDVIEVVDH 713

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
           E   ++ ++              L  RGG G       P  G  K   +
Sbjct: 714 E-AKFLVASEAGLGVRTRFEDYRLINRGGSGVWAID-LPEDGSIKLAGA 760



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 6/102 (5%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV---TGDHV 661
           V D   K LV S  G        +     R   G   + +  +  +KL   +     D V
Sbjct: 710 VVDHEAKFLVASEAGLGVRTRFEDYRLINRGGSGVWAIDLPEDGSIKLAGALSVREDDEV 769

Query: 662 AVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVIC 702
            ++    + +   +  I E +RG KGVRL + + G     I 
Sbjct: 770 MLLTAKGQSIRCPVKDIRETNRGAKGVRLVTLEPGDKLLSIA 811


>gi|119505503|ref|ZP_01627575.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2080]
 gi|119458612|gb|EAW39715.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2080]
          Length = 752

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 275/755 (36%), Positives = 430/755 (56%), Gaps = 25/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +   + + +SLR   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+G
Sbjct: 1   MSD-PVMGATSPETLSLRDYAEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+VIGK HPHGD + Y+++V +AQ F  RYPLI GQGN+G+ D   
Sbjct: 60  LKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQDFSYRYPLIDGQGNWGSPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T+ A+++L  + +  VD++  ++    EP+V P++ PNLL NGT+GIA
Sbjct: 120 SFAAMRYTESRLTRYADILLAELGQGTVDWQPNFDGTLDEPMVLPARVPNLLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+ +A + L++ P   +E L + I GPDFPT   I+  R  I   Y+
Sbjct: 180 VGMATDIPPHNLREVVKATIRLLEAPRAGLEDLSDIIQGPDFPTDAEIITPRSEISAMYK 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W VE+       +VV  +P+QV  S+++E+IA  + A+++P++ D+RDE
Sbjct: 240 TGRGSLKMRAAWRVED-----GAVVVHALPHQVSGSKVLEQIAAQMQARKLPMVADLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R V+ P++  +D D LM  +F  +D+E  + +N+NV+ +   P V  L  IL 
Sbjct: 295 SDHEHPTRFVVVPRSNRVDLDGLMSHLFATTDLERNYRVNLNVIGIDGRPGVKSLATILL 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR   R++ + +R+ IL+G L+AYLNIDE+I I+R ED+P+P +++RF 
Sbjct: 355 EWLEFRRTTVRRRLEHRLEKVLKRLHILEGYLVAYLNIDEVIRIVREEDEPRPALMARFQ 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q DAIL+L+LR+L KLEE +I+ E + L  E++ +   L S  +    I  E+  V
Sbjct: 415 LTELQADAILDLKLRNLAKLEEMKIRGEQNELAEERDDLQKTLGSDARLKTLIKKELESV 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
                       RR+   E   A   +  +      P+T+V+S +GWIR+ K H +D  A
Sbjct: 475 ANDHGD-----DRRSPIVEREEAKAFSELELTTAD-PLTIVLSEKGWIRAAKGHDIDPEA 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K+A    +    ++  + G++Y+LP+  L S RG GE +   I+       
Sbjct: 529 LSYKSGDGFKLAAKGRSNQPTVVFDSTGRSYSLPSHQLPSARGQGEPLTGRINPPSGATF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDH- 660
                     + L+ S  G  F+   +++    + GK  L +     +     V + D  
Sbjct: 589 EALLTGVDADRYLLASDAGYGFVGRFADLQTKNKAGKAVLSLPKGAGVLQPGSVGSADET 648

Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWI 712
             VA V    +LL+F +  +PE+SRGKG ++             +       +   +  I
Sbjct: 649 AMVAAVTNEGRLLVFPLTDLPELSRGKGNKIIGIPTPRAAAREELMVGAVVLVPGNVLQI 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            +  R      +DL  + G+RG  G+ +P GF + 
Sbjct: 709 TAGKRHLKLKFSDLEHYRGERGRRGNKLPNGFQKV 743


>gi|163736388|ref|ZP_02143807.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107]
 gi|161390258|gb|EDQ14608.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107]
          Length = 908

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 259/831 (31%), Positives = 406/831 (48%), Gaps = 111/831 (13%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E+G      ++KSAR V
Sbjct: 16  VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARPV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 76  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  IL  +++D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 136 AASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L++Y+ GPDFPTGG ++  R    ++Y  GRG   +RA+  VE
Sbjct: 196 IDATLALIEDPDLTSEQLIDYVPGPDFPTGG-VMLGRSGARKAYLEGRGSVVIRAKTRVE 254

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IVV EIPYQV K+ +IEKIAE +  K+I  +  ++DES  +   V+    R 
Sbjct: 255 EIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQDESDRNGVRVVVELKRD 314

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++  ++  S M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++ 
Sbjct: 315 ATAEVVLNQLYRFSPMQTHFGCNMLALN-GGRPEQLTLRRFLTSFLDFREDVIARRTAYD 373

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------------------- 419
           ++    R  IL GL +A  N+DE++A IR                               
Sbjct: 374 LRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAVDIAPYIRLIDD 433

Query: 420 ---------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L+S ++
Sbjct: 434 PTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRER 493

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I+ E+REV++ F+       RRT   + S   +    + +IE+E + V I++ G+I
Sbjct: 494 ILGIISDELREVRDNFAVP-----RRTEIVDWSGDME---DEDLIEREDMVVTITSGGYI 545

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 546 KRTPLVDFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 605

Query: 583 --GRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
                 G+AI  ++ +     I      D         +++  +S G+      S+    
Sbjct: 606 GGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDDEWENLQVVFATSGGDVRRNRLSDFTNV 665

Query: 635 TRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRL 689
            R GK  +K+  +  +KLV   +    D V +V  + + + F    +    SR   GVR 
Sbjct: 666 RRNGKIAMKLPEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDVRVFNSRESTGVRG 725

Query: 690 QSY-KDGGISDVICFK-------------------------------------------- 704
                +G     +                                               
Sbjct: 726 IRLVSEGDEVVSMSVIRHFSAEPWERNAFIKRFRSELGGEVAEDENGEESEGSLSEERYQ 785

Query: 705 --ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      +           +     +  RGG G    KG    G  +++
Sbjct: 786 EMLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAMKG----GAIVAT 832



 Score = 47.5 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 4/114 (3%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           +  +   L+ ++  G   +    +   + R G+    +     +        D + +   
Sbjct: 787 MLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAMKGGAIVATFPVELEDQIMLATS 846

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV---ICFKICEGLTWIDSAG 716
             + +   ++ I   SR   GVR+ +   G        I  +  E      S G
Sbjct: 847 KGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWIAERDDEDAEVPTSEG 900



 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV--- 656
           IV  F  +   ++++ +SKG +     + I   +R   G      +  E++  V  +   
Sbjct: 829 IVATFPVELEDQIMLATSKGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWIAER 888

Query: 657 TGDHVAVVGENR 668
             +   V     
Sbjct: 889 DDEDAEVPTSEG 900


>gi|320095116|ref|ZP_08026825.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319977983|gb|EFW09617.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 850

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 231/784 (29%), Positives = 385/784 (49%), Gaps = 43/784 (5%)

Query: 1   MGVDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  +  +++  + + E V+ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++
Sbjct: 1   MSDERTTDARHISDTERVRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G    ++F KS+R+VGEV+G  HPHGD ++YD+L RL QP+  RYPL++GQGNFG
Sbjct: 61  AMYDGGYRPASSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
                  AA RYTE +M  +A  +++ +DE+ VDF+D Y+  + EP + P++FPNLLANG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVES 235
           + GIAVGMAT IP HN++E+       +D+     E  +E LL+ I GPDFPTG  I+  
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVQWALDHSGASREELLEALLKLIPGPDFPTGATIL-G 239

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
            + I ++YR GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   +I
Sbjct: 240 HKGIEDAYRTGRGSITQRAVVSVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQI 298

Query: 296 PLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + DIRDE++    + ++    R     +++ +++  + ++  F  NM  L    VP+ 
Sbjct: 299 QGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTPLQENFSANMLALVD-GVPRT 357

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           + +DG ++ W+ H+ +V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR      
Sbjct: 358 LSIDGFIRHWITHQIDVIVRRTRFRLRKAMERLHILEGYLKALDALDEVIALIRRSPTVD 417

Query: 415 PVMVSRFSLTENQVDA---ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                   L +        IL L+LR L  LE  +I  E   L A  + +  +L+  ++Q
Sbjct: 418 EARAGLIDLLDVDAVQADAILALQLRRLAALERQKILDEHAQLKARVDDLRDILDKPERQ 477

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I+ E+ E+ + F        RRTT             + +I +E + V I+  G+ +
Sbjct: 478 RTIISEELSEIVDKFGDE-----RRTTILPFDGEMS---MEDLIPEEDVVVTITRDGFAK 529

Query: 532 S--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                     K     +     + GD ++      T   +L  +  G+ Y   A  +  G
Sbjct: 530 RTRTDNYRSQKRGGKGVRGTQLRGGDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYEIPEG 589

Query: 584 RGHGE--AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
               +   +  L+    ++ I        Y+    L++ +  G       +   +    G
Sbjct: 590 GRDAKGQHVANLLAFQPDERIAQVLAIRTYEDADHLVLATKSGLVKKSPLALYNSPRSGG 649

Query: 639 KTFLKVSSE-----EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRL 689
              + +  +     +++     +     + +V  + + + F+     +  M R   GVR 
Sbjct: 650 IIAINLREDEAGNPDELVSAQTIMADQDLILVSRDGQAVRFAATDEQLRPMGRSTSGVRG 709

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
             ++ G    +      EG   +      Y +           RG +G  V K     G 
Sbjct: 710 MKFR-GDDELLSMEVPVEGTDLLIVTESGYAKRTPVAEYPTKSRGTMGVRVGKLSDERGG 768

Query: 750 FLSS 753
            + +
Sbjct: 769 LVGA 772



 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 9/141 (6%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  + F+  D L           +L+++  G A   P     +    
Sbjct: 694 DEQLRPMGRSTSGVRGMKFRGDDELLSMEVPVEGTDLLIVTESGYAKRTPVAEYPTKSRG 753

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
              +++    +    +V A V      ++V++  G    V  S++   +R     +    
Sbjct: 754 TMGVRVGKLSDERGGLVGALVVKPDEDVMVITESGKLVQVNASDVRPTSRNTMGVI---- 809

Query: 647 EEKMKLVVKVTGDHVAVVGEN 667
                       D +  +  N
Sbjct: 810 -----FARPDADDRIIAITRN 825


>gi|163741077|ref|ZP_02148469.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161385430|gb|EDQ09807.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10]
          Length = 908

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 259/831 (31%), Positives = 406/831 (48%), Gaps = 111/831 (13%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E+G      ++KSAR V
Sbjct: 16  VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARPV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 76  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  IL  +++D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 136 AASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L++Y+ GPDFPTGG ++  R    ++Y  GRG   +RA+  VE
Sbjct: 196 IDATLALIEDPDLTSEQLIDYVPGPDFPTGG-VMLGRSGARKAYLEGRGSVVIRAKTRVE 254

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IVV EIPYQV K+ +IEKIAE +  K+I  +  ++DES  +   V+    R 
Sbjct: 255 EIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQDESDRNGVRVVVELKRD 314

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++  ++  S M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++ 
Sbjct: 315 ATAEVVLNQLYRFSPMQTHFGCNMLALN-GGRPEQLTLRRFLTSFLDFREDVIARRTAYD 373

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------------------- 419
           ++    R  IL GL +A  N+DE++A IR                               
Sbjct: 374 LRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAVDIAPYIRLIDD 433

Query: 420 ---------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L+S ++
Sbjct: 434 PTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRER 493

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I+ E+REV++ F+       RRT   + S   +    + +IE+E + V I++ G+I
Sbjct: 494 ILGIISDELREVRDNFAVP-----RRTEIVDWSGDME---DEDLIEREDMVVTITSGGYI 545

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 546 KRTPLVDFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 605

Query: 583 --GRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
                 G+AI  ++ +     I      D         +++  +S G+      S+    
Sbjct: 606 GGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDDEWENLQVVFATSGGDVRRNRLSDFTNV 665

Query: 635 TRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRL 689
            R GK  +K+  +  +KLV   +    D V +V  + + + F    +    SR   GVR 
Sbjct: 666 RRNGKIAMKLPEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDVRVFNSRESTGVRG 725

Query: 690 QSY-KDGGISDVICFK-------------------------------------------- 704
                +G     +                                               
Sbjct: 726 IRLVSEGDEVVSMSVIRHFSAEPWERNAFIKRFRSELGGEVAEDENGEESEGSLSEERYQ 785

Query: 705 --ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      +           +     +  RGG G    KG    G  +++
Sbjct: 786 EMLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAMKG----GAIVAT 832



 Score = 47.5 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 4/114 (3%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           +  +   L+ ++  G   +    +   + R G+    +     +        D + +   
Sbjct: 787 MLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAMKGGAIVATFPVELEDQIMLATS 846

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV---ICFKICEGLTWIDSAG 716
             + +   ++ I   SR   GVR+ +   G        I  +  E      S G
Sbjct: 847 KGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWIAERDDEDAEVPTSEG 900



 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV--- 656
           IV  F  +   ++++ +SKG +     + I   +R   G      +  E++  V  +   
Sbjct: 829 IVATFPVELEDQIMLATSKGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWIAER 888

Query: 657 TGDHVAVVGENR 668
             +   V     
Sbjct: 889 DDEDAEVPTSEG 900


>gi|14021652|dbj|BAB48264.1| DNA gyrase subunit A [Mesorhizobium loti MAFF303099]
          Length = 906

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 258/835 (30%), Positives = 406/835 (48%), Gaps = 118/835 (14%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL+YA+S I  RA+PD+RDG KPVHRRI++A  E G  +   + KSAR V +V+GK
Sbjct: 1   MQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+IDGD  AA RYTE+R+T+VA  +L+
Sbjct: 61  YHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLE 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF++TY+  D+EP V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A
Sbjct: 121 DIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +IDNP I +  L+E I GPDFPTGGI++  R  I  +Y  GRG   +R +  +E+ G   
Sbjct: 181 IIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIYSAYSTGRGSIVMRGKVNIEQRGNDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TE+PYQV K+ +IEK+AEL+  KRI  + DIRDES      V+    R    D++
Sbjct: 240 ESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIELKRDAVADVI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L+ G  P+++ L  +LK +++ R EV+ RR+ F ++    
Sbjct: 300 LNQLYRFTPLQTSFGANMVALN-GGKPELLTLTDMLKAFVSFREEVITRRTKFLLRKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------------------------- 419
           R  +L GL IA  NIDE+I +IR    P+                               
Sbjct: 359 RAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPAGDVESLILLIDDPRHRIN 418

Query: 420 ---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               ++L+E Q  AIL LRL+ L  L   +I  EL+++ AE      +L+S  +    + 
Sbjct: 419 ADGTYNLSEEQARAILELRLQRLTALGRDEIADELNSIGAEIVDYLDILSSRARVQQIVK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  V++ F        RRT   E++        + +I++E + V +S+ G+I+     
Sbjct: 479 DELAAVRDEFGTP-----RRT---ELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLS 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
                +      S +  KE D +     A+T   +L  S+ G  Y      L   + +  
Sbjct: 531 LYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGNPQSR 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKT 640
           G+A+  ++ L   + I T               ++  +++G     + S+ +   R GK 
Sbjct: 591 GKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSDFVQVNRNGKI 650

Query: 641 FLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSYKDGG 696
            +K+    +++  V   T  D V +   + + + FS+  +    SR   GVR  +  +  
Sbjct: 651 AMKLEEEGDEILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAETD 710

Query: 697 ISDVICF----------------------------KICEGLTWID--------------- 713
               +                                 E    +                
Sbjct: 711 RIISMSVIENVDASPAERAAYLKRAAAERRLAAGANGEEEEIALTNEEIGEEAELSDERY 770

Query: 714 ------------SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLSS 753
                            Y +  +     L  RGG G        ++   G+ +++
Sbjct: 771 EFLKAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVS-KTAEIGRLVAT 824



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 74/273 (27%), Gaps = 20/273 (7%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             + G R TT   +   + +  +  ++       V  N+       + +  ++    +EG
Sbjct: 599 PLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSDFVQVNRNGKIAMKLEEEG 658

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV- 607
           D +         D +LL ++ G+      G++   +         I +     I++  V 
Sbjct: 659 DEILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAETDRIISMSVI 718

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK---TFLK---VSSEEKMKL----VVK 655
              D++                    +A    G+     L    +  E ++       +K
Sbjct: 719 ENVDASP----AERAAYLKRAAAERRLAAGANGEEEEIALTNEEIGEEAELSDERYEFLK 774

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD--VICFKICEGLTWI 712
               +V  V E       S        RG KG+R             V  F +      +
Sbjct: 775 AHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGRLVATFPVGNDDQIM 834

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +                 R   G  +     
Sbjct: 835 LVSDGGTVIRVPVNGIRFASRATKGVTIFNTAE 867


>gi|99081173|ref|YP_613327.1| DNA gyrase subunit A [Ruegeria sp. TM1040]
 gi|99037453|gb|ABF64065.1| DNA gyrase A subunit [Ruegeria sp. TM1040]
          Length = 912

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 256/832 (30%), Positives = 401/832 (48%), Gaps = 108/832 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR V
Sbjct: 26  VSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKAYRKSARPV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 86  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 146 AAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L+EY+ GPDFPTGG ++  R    ++Y  GRG   +RA+  VE
Sbjct: 206 VDATLALIEDPDLTSEQLIEYVPGPDFPTGG-VMLGRSGARKAYLEGRGSVIIRAKTRVE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IVV EIPYQV K+ +IEKIAE +  KRI  +  ++DES  +   V+    R 
Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELKRD 324

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++ 
Sbjct: 325 ATPEVVLNQLYRFTPMQTSFGCNMLALN-GGRPEQLTLRKFLTSFIDFREDVVARRTAYN 383

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------------------- 419
           ++    R  IL GL +A  N+DE++A IR+                              
Sbjct: 384 LRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARHKLMTRRWPAADIAGYIRLIDD 443

Query: 420 ---------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++L+E Q  AIL LRL+ L +L   ++  EL+ L  + ++   +L+S ++
Sbjct: 444 PTHTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILSSRER 503

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             + IA E+ EV+E F+       RRT   + S   +    + +IE+E + V +++ G+I
Sbjct: 504 IMSIIADELAEVRESFAVP-----RRTEIVDWSGDME---DEDLIEREDMVVTVTSGGYI 555

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 556 KRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 615

Query: 583 --GRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
                 G+AI  ++ +     I      D         +++  +S G       S+    
Sbjct: 616 GGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKEWDDLQIMFATSAGTVRRNRLSDFTNV 675

Query: 635 TRKGKTFLKVSS---EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVR 688
            R GK  +K        K+         D + +V    + + F   ++    SR   GVR
Sbjct: 676 MRNGKIAMKFEDENQGTKLINARICSEDDDIMLVTNTGRAIRFPTTEVRVFNSRNSVGVR 735

Query: 689 LQSYKDGGISDVICFK-------------------------------------------- 704
                +      +                                               
Sbjct: 736 GIKLGEDDEVVSMSVIRHSKYTPEQRSAYLKMRRAMAGLTDEDASDEDAVEDPNFSTELF 795

Query: 705 ---ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +        +  +     +  RGG+G        R G  ++S
Sbjct: 796 AEMSAAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMDKAMRGGALVAS 847



 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 5/112 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L +++ G+  +    +     R G     +        +     V   D + +  
Sbjct: 801 AENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMDKAMRGGALVASFPVELDDQIMLAT 860

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +   +D I   SR   GVR+ +   G     + +    G        
Sbjct: 861 SKGQSIRVPVDGISFRSRSAGGVRIFNTGKGEEVVSVAWIADNGDDEETVEE 912



 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 76/264 (28%), Gaps = 10/264 (3%)

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           +  ++K    +   F+ +   V         ++ +  +  +K E +N   +         
Sbjct: 643 VDRDEKEWDDLQIMFATSAGTVRRNRLSDFTNVMRNGKIAMKFEDENQGTKLINARICSE 702

Query: 467 SGKQQW----NQIACEIREVKEIFSKSTDLGRRRTTFCEVSR--ADKATLQQAMIEKEPI 520
                      +          +F+    +G R     E     +           ++  
Sbjct: 703 DDDIMLVTNTGRAIRFPTTEVRVFNSRNSVGVRGIKLGEDDEVVSMSVIRHSKYTPEQRS 762

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
             +   R         + D  A+      +   A  +   + IL ++  G      + + 
Sbjct: 763 AYLKMRRAMAGLTDEDASDEDAVEDPNFSTELFAEMSAAENLILTITAGGSGKLSSSHDY 822

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--G 638
                 G  +  +        +V +F  +   ++++ +SKG +  V    I   +R   G
Sbjct: 823 PVRGRGGMGVTAMDKAMRGGALVASFPVELDDQIMLATSKGQSIRVPVDGISFRSRSAGG 882

Query: 639 KTFLKVSSEEKMKLVVKV--TGDH 660
                    E++  V  +   GD 
Sbjct: 883 VRIFNTGKGEEVVSVAWIADNGDD 906


>gi|332705056|ref|ZP_08425141.1| DNA gyrase subunit A [Lyngbya majuscula 3L]
 gi|332356233|gb|EGJ35688.1| DNA gyrase subunit A [Lyngbya majuscula 3L]
          Length = 846

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 233/755 (30%), Positives = 372/755 (49%), Gaps = 48/755 (6%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK HPHGD +V
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLSPERPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVDEDAVD 153
           YD+LVR+AQ F  R PLI+G GNFG++D D  AA RYTE R+  +A   +L+ ++ + VD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQAIATNALLRDIESETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F D ++    EP V P++ P LL NG+SGIAVGMAT+IP HN+ E+ +  +A+I NPEI+
Sbjct: 121 FVDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPHNLGELVDGLVAVIHNPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG----RGSWCIV 269
            ++L  YI GPDFPTG  I+     I ++Y  GRG   +R    +E +G         I+
Sbjct: 181 DKELRRYIPGPDFPTGAQIL-GTSGIKDAYTSGRGSITMRGVAEIETIGQRGRPDKEAII 239

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           +TE+PYQ  K+ LIEKIAEL+  KRI  + DIRDES  +   ++    R   P +++ ++
Sbjct: 240 ITELPYQTNKASLIEKIAELVNDKRIDGISDIRDESDRNGMRIVIELKRDAYPKVVLNNL 299

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + ++T F  NM  L  G  PQ++ +   L  +L  R E + RR+ ++++  + R  +
Sbjct: 300 YKQTPLQTNFGANMLALV-GNEPQLLTIKQFLNVFLDFRIETITRRTQYQLRKAEERDHL 358

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GLLIA  ++D +IA+IR           +V+ FSL+E Q DAIL ++LR L  LE  +
Sbjct: 359 LQGLLIALDSLDAVIAVIRGAADTTTARGQLVTEFSLSEAQADAILQMQLRRLTALEAQK 418

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I++E + L      +  +L    +    I  E +++K+ F+       ++          
Sbjct: 419 IQAEHEELQVRIADLRDILARRSRILEIIETEAQQLKQNFATPRRTQIQQVEGELDDTDL 478

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
            A  +  ++  E   +        R+    +   +A   K+ D ++        D IL  
Sbjct: 479 IANEKAVILLTEQGYIKRMPVDEFRAQARATRGKAAARIKDDDEVEHFFTCCDHDSILFF 538

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           S  G  Y+L A  +   S    G  I  ++ + H + I +      +     L++++ KG
Sbjct: 539 SDRGVVYSLRAYQIPAVSRTARGVPIVQMLPIPHEEKITSIVPVSEFTDDEYLVMLTHKG 598

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI--DQI 678
                           G   + +   ++++ V++    D + +   +   + F    DQ+
Sbjct: 599 YIKKTALDAFSKIRANGLIAISLGEGDQLRWVLRAREEDSIIIGSRHGMAIHFKCDNDQL 658

Query: 679 PEMSRG-KGVRLQSYKDGG------------ISDVICFKICEGLT--------------- 710
             + R  +GV+    K               I+ +   +  E  T               
Sbjct: 659 RPLGRATRGVKAMKLKGDDELIGMDILSGQIIASLAAAEDSEEETEDLSDSEMVETAAQG 718

Query: 711 --WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
              +      Y +        L  R G+G    K 
Sbjct: 719 PWVLIVTMGGYGKRVPVSQFRLQNRAGMGVRSTKF 753



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENRK 669
           +L+V+  G    V  S+     R G           ++++  +  V  GD + +V     
Sbjct: 721 VLIVTMGGYGKRVPVSQFRLQNRAGMGVRSTKFRLPKDQLAALQVVNEGDELMIVTSRGI 780

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++  ++D I   SR   GVR+Q   D      +    
Sbjct: 781 IIRQAVDAISPQSRMATGVRVQKLDDEDAIAAVALVP 817


>gi|21309846|gb|AAM46065.1|AF263924_4 DNA gyrase alpha subunit [Peanut witches'-broom phytoplasma]
          Length = 846

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 229/771 (29%), Positives = 395/771 (51%), Gaps = 27/771 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +  ++ S  + +    V+ V +   +++ +L+YA+S I  RA+PD+RDG KPV RRI++ 
Sbjct: 12  LNEEHSSLDSKINFNRVQVVDINEEVKKSFLSYAMSVIVRRALPDIRDGMKPVQRRILYI 71

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+++GL     FKK+A +VG V+G+ HPHGD S+Y+++VR+AQ F  RYPLI+G GNFG+
Sbjct: 72  MNDLGLSNQERFKKAAAVVGAVMGRCHPHGDNSIYEAMVRMAQDFNYRYPLITGHGNFGS 131

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAA RYTEARM+++A  +++ ++++ VDF DTY+  + EP V P+ FPNLL NG+
Sbjct: 132 IDGDSAAAMRYTEARMSKIAIELIRNIEQETVDFIDTYDGNEKEPTVLPALFPNLLVNGS 191

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN +E+  A +A I+N  I  + L++Y+ GPDFPTGG I+   E++ 
Sbjct: 192 TGIAVGMATNIPPHNFKEVINALIAFINNKNIETQDLMKYLKGPDFPTGGEIL-GAENLK 250

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
             Y  G+G   +R++  + +  +    IV+TEIP+Q++KS LIE IA L   K I  + D
Sbjct: 251 NIYNTGKGRIFIRSKTQIIQNDKNKNSIVITEIPFQIKKSSLIESIAFLAKEKIIDGITD 310

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES      ++    R ++P +++ +++  S ++  F  NM  L    VP+++ L  +
Sbjct: 311 LRDESNRQGIKLVIDLKRDVNPHVVLNNLYKNSQVQVSFNFNMIALVK-GVPKLVNLKQM 369

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VM 417
           LKE+   R  V+ R+  F +    ++  ++K L+IA  +ID ++ +I++    K     +
Sbjct: 370 LKEFFDFRINVIQRQKQFELSKALKKQHLVKALIIALNDIDRVVRLIKSSSNSKMAQIQL 429

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + ++ L E Q   IL + L+ +  LE  +IK E   L  +  +  +++NS   +   +  
Sbjct: 430 MEKYQLDELQSKVILEMSLQKITNLEIEKIKQEDTELSLKISECQNIINSILLKEQILKQ 489

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           ++  +++ F         R T   +   D    + ++IEKE I + I+++G+I+ L   +
Sbjct: 490 DLLNLQKNFQDG------RRTVINMENQDLDIDKSSLIEKEKILITITHKGYIKRLNLDT 543

Query: 538 V--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE- 588
                     +  +     D ++      T D  L  +  GK Y +    + S   H + 
Sbjct: 544 YKKQNKGGKGVIGITMNRDDFVEHFAITSTHDYQLFFTNKGKVYQIKGYEIASYSRHAKG 603

Query: 589 -AIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
             +  LI +   + + T             L++V+ KG        E       GK    
Sbjct: 604 IPLVNLIPMAKGEFLTTLTSVTEFNKNKDYLVLVTKKGFIKRNRIQEYANIRSNGKIAFA 663

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +  ++++  V+K +G   + +     K +    + I   +R   GV              
Sbjct: 664 LKKDDEVLAVLKTSGQQDIILASSGGKSIRLKENSIRTTNRKSSGVIGMRMDKDEQIVGA 723

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                     +      Y +          +RGG G    K   + G  ++
Sbjct: 724 AVVCHPEQDILVVTEFGYGKKTQASFYKPQQRGGKGVKTLKITDKKGHLVA 774



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 79/214 (36%), Gaps = 16/214 (7%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
              + +   V+++ +G+I+  +             A   K+ D +   L       I+L 
Sbjct: 626 EFNKNKDYLVLVTKKGFIKRNRIQEYANIRSNGKIAFALKKDDEVLAVLKTSGQQDIILA 685

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           S+ GK+  L   ++ +       +  +      Q +  A V      +LVV+  G     
Sbjct: 686 SSGGKSIRLKENSIRTTNRKSSGVIGMRMDKDEQIVGAAVVCHPEQDILVVTEFGYGKKT 745

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMS 682
           + S      R GK    +   +K   +  +  +   + + ++ +  +++    +++   +
Sbjct: 746 QASFYKPQQRGGKGVKTLKITDKKGHLVALKTIFPNEELILISQCGQVIRIEANKV-STT 804

Query: 683 RGK---GVRLQSYKDGG--ISDVICFKICEGLTW 711
           + K   G RL   KD    ++ V+  K  +  + 
Sbjct: 805 KSKNTEGNRLFKLKDDDKLLNLVVVQKQEDDDSI 838


>gi|303252209|ref|ZP_07338377.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247552|ref|ZP_07529596.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648992|gb|EFL79180.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855917|gb|EFM88076.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 748

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 264/746 (35%), Positives = 441/746 (59%), Gaps = 23/746 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAY 129
            +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAM 123

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT
Sbjct: 124 RYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMAT 183

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G 
Sbjct: 184 DIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGS 243

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++RA W  E+       IV+  +P+Q   S++IE+IA  +  K++P+++DIRDES  + 
Sbjct: 244 IKMRAVWKKEDGE-----IVILALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHEN 298

Query: 310 --RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
             RIVL P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  
Sbjct: 299 PIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR  + RR ++R+  I  R+ IL+GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q
Sbjct: 359 RRTTVTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AILNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+
Sbjct: 419 TEAILNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFA 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ 
Sbjct: 479 SP-----RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRA 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD      +  +   ++ L + G+AY L   +L S R  GE +   I L     +    +
Sbjct: 533 GDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLM 592

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVV 664
            +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    +  +
Sbjct: 593 ANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAM 652

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWIDSAG-RS 718
               ++L+F I ++P++S+GKG ++ +      K+G         +    + +  +G R 
Sbjct: 653 SSVGRMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPAQSLVFVSGKRK 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                +D+  + G+R   GS + +G 
Sbjct: 713 ITLKPSDIDNYRGERARKGSQLVRGL 738


>gi|330993201|ref|ZP_08317138.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1]
 gi|329759752|gb|EGG76259.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1]
          Length = 933

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 239/850 (28%), Positives = 387/850 (45%), Gaps = 104/850 (12%)

Query: 6   ISN--SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++    + L   ++  V++   +   YLAYA+S I  RA+PD+RDG KPVHRRI+++M E
Sbjct: 1   MTEIPDDPLPPSDMLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      ++KSAR VG+V+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DG
Sbjct: 61  SGFTHDKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DS AA RYTEAR+ + A  +L  +D D VDF+  Y+E + EP + P+ FPNLL NG SGI
Sbjct: 121 DSPAAMRYTEARLAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLVNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN  EI +A LA+I+ P+++++ LL+Y+ GPDFPTGG I+  R  I  ++
Sbjct: 181 AVGMATNIPPHNPGEIIDATLAMIERPDMTLDDLLDYVPGPDFPTGGTIL-GRAGIRSAF 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +RA+  +EE+ +    I+VTEIPYQV K+ L E+IA+L+  K++  + DIRD
Sbjct: 240 ETGRGSVIIRAKAEIEEIRKDRRAIIVTEIPYQVNKATLQERIADLVRTKQVEGISDIRD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      ++    R   P++++  ++  + ++T F +NM  L  G  P++M L  +L+ 
Sbjct: 300 ESDRSGMRIVIEIKREATPEVVLNQLYRFTQLQTSFGVNMLALD-GGQPRLMGLKDVLEA 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-------------- 409
           ++  R +V+ RR+ F +     R  +L GL+IA  NID +IA+IR               
Sbjct: 359 FIRFREDVILRRARFDLNKARDRAHLLVGLVIAVANIDAVIALIRAAPDTAAARAALMAR 418

Query: 410 --------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                          D+   ++  +  LTE Q   IL LRL+ L  LE  +I+ EL  + 
Sbjct: 419 GWDAADVAPLLELIHDEGNVIVDGKVHLTEAQARGILELRLQRLTGLERDKIQQELSEVA 478

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
                +  ++ S  ++   +  E+  ++   +             +   +     Q  + 
Sbjct: 479 VRINDLLEIIASRPRRMEVMRNELVSIRAELATPRATDIADYAGDQTDESLIEPGQMVVT 538

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                 +  +     R+        +A   +  D +  + +AHT   +L  S+ GKAY  
Sbjct: 539 ITREGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIVRSFNAHTHQWVLFFSSGGKAYRE 598

Query: 576 PAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVE 627
               L       +  A+  L+    +  I                 L+  ++ G+     
Sbjct: 599 KVWRLPEASPTAKGRALVNLLPDLGSDTITAVLPLPQDEDLWENLHLVFATASGSVRRNR 658

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEM-SR 683
            S+       G   +K+  ++++  V     G  V +   N + + F I    +     R
Sbjct: 659 LSDFRNIRASGLIAMKLEGDDRLIGVATCREGQDVFLGTRNARCIRFQITDDTLRVFAGR 718

Query: 684 GK-GVRLQSY---------------------------------------KDGGISDVICF 703
           G  GVR                                           +D    ++   
Sbjct: 719 GSSGVRGIRLAEGDSVNSLCVLNHVDATVEERAAYLRMANARRRAEAAQEDEETDEITAG 778

Query: 704 KICE-------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
              E                       +  +   + R  +     +  RGG G       
Sbjct: 779 DDAEIPADDLPLTPERFAELEAAEEVLLIVSNAGFGRRSSAYDYRVSGRGGQGINNMTFS 838

Query: 745 -PRSGKFLSS 753
             + G  + +
Sbjct: 839 ANKRGNAVVA 848



 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKV----TGDHVAV 663
           +   LL+VS+ G        +   + R G+    +  S+ ++   VV       G  V +
Sbjct: 801 AEEVLLIVSNAGFGRRSSAYDYRVSGRGGQGINNMTFSANKRGNAVVATLPVLEGTDVML 860

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V +  +L+   I Q+  MSR   GV L    D      +   + +G  
Sbjct: 861 VTDAGRLIRLPIGQVRIMSRQASGVTLFRLNDTEEVTSVFPVMDDGED 908


>gi|239787338|emb|CAX83815.1| DNA gyrase subunit A [uncultured bacterium]
          Length = 890

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 236/829 (28%), Positives = 390/829 (47%), Gaps = 100/829 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++K + L   +++ YL YA+S I  RA+PD+RDGFK VHRRI++ +  +G D     +K
Sbjct: 8   DDIKRIPLEEEMKQSYLDYAMSVIVARALPDVRDGFKTVHRRILYVLKRLGFDHTKPHRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+GK HPHGD ++Y+++VR+AQ F    PLI GQGNFG+IDGDSAAA RYTE+
Sbjct: 68  SALIVGEVMGKYHPHGDSAIYETMVRMAQDFSMSIPLIDGQGNFGSIDGDSAAAMRYTES 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++++ IL  +D + V FR  Y+    EP V P++ P++L NGTSGIAVGMAT+IP H
Sbjct: 128 RMAKISKEILADLDCNTVAFRPNYDGSLQEPTVLPTRVPSMLLNGTSGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A  AL++NP + + +++E++ GPDFPTGG I+     I+ ++R GRG   +R 
Sbjct: 188 NLGELLDACCALVENPLMELPEIMEFVKGPDFPTGGQIL-GTSGILNAFRTGRGSIVMRG 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VEE+      IVVTEIPYQV K++L+EKI EL   K +  + +IRDES      ++ 
Sbjct: 247 KASVEELKGDKEAIVVTEIPYQVNKAKLVEKIGELSRDKVVDGIGEIRDESNRHGIRIVI 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  +  +++  ++  + ++  F  N+  L    VPQ + L   L  +L  R +V+ R
Sbjct: 307 EIKRDGNSQVILNQLYKHTQLQMNFSANVLALVK-GVPQTLGLKASLTCFLEFRYDVIVR 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---------------------- 412
           R+ + ++    +  IL G  +A  +ID++I +I+                          
Sbjct: 366 RTRYFLEKARDKAHILLGFALALSHIDQVITLIKAATDRKSALATLMHENWDAASIKSYL 425

Query: 413 -----PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                P+      + L+E Q +AIL+LRL  L  +E+ +IKS+L + +   ++   +L  
Sbjct: 426 ALLQGPQAESGPYYRLSEIQANAILDLRLHKLTGMEQEEIKSDLQSTMDAIQEYIDILGK 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            ++    +  E + +K  +        RR+       A+     + +I  E + V IS  
Sbjct: 486 PERVRKIMTDEFKTIKADYPTP-----RRSEIL---PAEDDIEDEDLIPSEEMVVTISFG 537

Query: 528 GWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+ +   +           S +  KE D ++  + A+T DR+L  +  G+ Y +P   
Sbjct: 538 GYIKRVPLSTYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFTNIGQVYRIPVHQ 597

Query: 580 LLSGRGHGE--AIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIA 633
           L  G    +  AI  ++ +  ++ I +        D    LL ++SKG       S+   
Sbjct: 598 LPIGTPQAKGRAIINVLPIEKDEKITSILDVSKEMDDASTLLFITSKGQVRRNAVSDFER 657

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM-SRG-KGVRLQ 690
               GK  + +   E +  V     D+ V +       + F    +     R   GVR  
Sbjct: 658 IQSNGKRAMVLEDGETLIAVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTGVRGI 717

Query: 691 SYKDGGISDVICFKI--------------------------------------------- 705
                                                                       
Sbjct: 718 KLAHDDTIISASVLEGFNVDPAERALYLRARAAERGIQGETEDQDTTVEGALSDERLLEL 777

Query: 706 -CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  +      + +  +        RGG+G+       ++G  +++
Sbjct: 778 QEHEQYILTITDLGFGKRTSGYEYRTTGRGGLGANGILLSAKNGHVVNA 826



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 6/110 (5%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGE 666
              +L ++  G        E     R G       L   +   +     +  D + ++  
Sbjct: 781 EQYILTITDLGFGKRTSGYEYRTTGRGGLGANGILLSAKNGHVVNAFPVIPQDQIMLITN 840

Query: 667 NRKLLIFSIDQIPEMS-RGKGVRLQSY-KDGGISDVICFKICEGLTWIDS 714
             +LL   ++ I     R +GV L    KD  + +V   +  E    +D+
Sbjct: 841 KGRLLRCGVNDIRIAGRRTQGVILMRLEKDERVVNVTRIEETEEGNVMDA 890


>gi|315605501|ref|ZP_07880538.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315312768|gb|EFU60848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 867

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 232/784 (29%), Positives = 389/784 (49%), Gaps = 43/784 (5%)

Query: 1   MGVDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  + +++   + + E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++
Sbjct: 1   MSDEQMTDVRHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G    ++F KS+R+VGEV+G  HPHGD ++YD+L RL QP+  RYPL++GQGNFG
Sbjct: 61  AMYDGGYRPSSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
                  AA RYTE +M  +A  +++ +DE+ VDF+D Y+  + EP + P++FPNLLANG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVES 235
           + GIAVGMAT IP HN++E+       + +PE + E+LLE     I GPDFPTG  I+  
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVEWALAHPEATREELLEALLTIIPGPDFPTGATIL-G 239

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R+ I ++YR GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+    I
Sbjct: 240 RKGIEDAYRTGRGSITQRAVVSVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGAI 298

Query: 296 PLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + DIRDE++    + ++    R     +++ +++  + ++  F  NM  L    VP+ 
Sbjct: 299 GGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVD-GVPRT 357

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           + +DG ++ W+ H+ +V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR      
Sbjct: 358 LSIDGFIRHWITHQIDVIVRRTRFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVD 417

Query: 415 PVMVSRFSLTENQVDA---ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
              V    L +        IL L+LR L  LE  +I  E   L A  + ++ +L + ++Q
Sbjct: 418 EARVGLIDLLDVDAVQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDILATPERQ 477

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I+ E+ E+ + F        RRT              + +I +E + V I+  G+ +
Sbjct: 478 RAIISAELSEIVDKFGDE-----RRTRILPFDGEMS---MEDLIPEEDVVVTITRDGFAK 529

Query: 532 S--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                     K     +     ++ D ++      T   +L  +  G+ Y   A  +  G
Sbjct: 530 RTRTDNYRSQKRGGKGVRGTQLRDDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYEIPEG 589

Query: 584 RGHGE--AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
               +   +  L+    ++ I        Y+    L++ + +G       S   +    G
Sbjct: 590 GRDAKGQHVANLLAFQPDEHIAQVLAIRTYEDADYLVLATKRGLVKKTPLSLYNSPRSGG 649

Query: 639 KTFLKVSSE-----EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRL 689
              + +  +     +++     +   + + +V  + + + F+     +  M R   GVR 
Sbjct: 650 IIAINLREDEDGKADELVSAQIIMADEDLILVSRDGQAVRFTATDEQLRSMGRSTSGVRG 709

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
             ++ G    +      EG   +      Y +           RG +G  V K     G 
Sbjct: 710 MKFR-GDDELLSMEVPHEGTDLLIVTESGYAKRTPVEEYPTKSRGTLGVRVGKLVDERGG 768

Query: 750 FLSS 753
            + +
Sbjct: 769 LVGA 772



 Score = 42.8 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 47/141 (33%), Gaps = 9/141 (6%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +RS+   +  +  + F+  D L      H    +L+++  G A   P     +    
Sbjct: 694 DEQLRSMGRSTSGVRGMKFRGDDELLSMEVPHEGTDLLIVTESGYAKRTPVEEYPTKSRG 753

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
              +++   ++    +V A V      ++V++  G    V  S++    R     +    
Sbjct: 754 TLGVRVGKLVDERGGLVGALVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVI---- 809

Query: 647 EEKMKLVVKVTGDHVAVVGEN 667
                      GD +  +  N
Sbjct: 810 -----FARPDDGDRIIAITRN 825


>gi|307256600|ref|ZP_07538381.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307261034|ref|ZP_07542716.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306865010|gb|EFM96912.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306869336|gb|EFN01131.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 748

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 264/746 (35%), Positives = 441/746 (59%), Gaps = 23/746 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAY 129
            +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAM 123

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT
Sbjct: 124 RYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMAT 183

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G 
Sbjct: 184 DIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGS 243

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++RA W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  + 
Sbjct: 244 IKMRAVWKKEDGE-----IVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHEN 298

Query: 310 --RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
             RIVL P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  
Sbjct: 299 PIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR  + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q
Sbjct: 359 RRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AILNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+
Sbjct: 419 AEAILNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFA 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ 
Sbjct: 479 SP-----RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRA 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD      +  +   ++ L + G+AY L   +L S R  GE +   I L     +    +
Sbjct: 533 GDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLM 592

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVV 664
            +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    +  +
Sbjct: 593 ANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAM 652

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWIDSAG-RS 718
               ++L+F I ++P++S+GKG ++ +      K+G         +    + +  +G R 
Sbjct: 653 SSVGRMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFVSGKRK 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                +D+  + G+R   GS + +G 
Sbjct: 713 ITLKPSDIDNYRGERARKGSQLVRGL 738


>gi|261496791|ref|ZP_05993165.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307538|gb|EEY08867.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 748

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 264/751 (35%), Positives = 440/751 (58%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +  +  E ++ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   TTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGM
Sbjct: 122 AMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+ +A++ L+DNP+ +++ +L  + GPD+PT   I+  +  I   Y  GR
Sbjct: 182 ATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV++ +P+Q   S++IE++A  +  K++P+++DIRDES  
Sbjct: 242 GSIKMRAVWKKEEGE-----IVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RR  + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+LT+
Sbjct: 357 SFRRTTVTRRLNYRLDKILNRLYILDGLMIAFLNIDEVIEIIRNEDEPKAELMARFNLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+Q+++E   L  E++++  +L S ++  + I  EI+   + 
Sbjct: 417 VQAEAILNLRLRHLAKLEEHQLQAEKSELEKERDELQLILGSERRLNSLIKKEIQADAKA 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E + + KA  +  +   E +TV++S +GW+R  K H +D+ AL +
Sbjct: 477 FASP-----RRSPLVERAES-KAIAESDLTPIEDVTVILSEKGWVRCAKGHDIDVQALSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD         +   ++ L + G+AY L   +L S R  GE +   I L     +   
Sbjct: 531 RAGDDYLAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VA 662
            + +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  D    + 
Sbjct: 591 LMANSETKVLMASDSGYGFICTFEDLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLV 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICE-GLTWIDSAG 716
            +    ++L+F + ++P +S+GKG ++ +      K G         I         S  
Sbjct: 651 AMSNVGRMLVFPVSELPALSKGKGNKIINISAAAAKSGDEYLARLLVIKPTNSLVFVSGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +D+  + G+R   GS + +G   +
Sbjct: 711 RKITLKPSDIDNYRGERARKGSQLVRGLSTN 741


>gi|307252132|ref|ZP_07534031.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860432|gb|EFM92446.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 751

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 265/748 (35%), Positives = 442/748 (59%), Gaps = 23/748 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 5   STEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 64

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S A
Sbjct: 65  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGM
Sbjct: 125 AMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGM 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+
Sbjct: 185 ATDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGK 244

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  
Sbjct: 245 GSIKMRAVWKKEDGE-----IVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDH 299

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIVL P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 300 ENPIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E
Sbjct: 360 VFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + 
Sbjct: 420 AQAEAILNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKA 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L +
Sbjct: 480 FASP-----RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSY 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD      +  +   ++ L + G+AY L   +L S R  GE +   I L     +   
Sbjct: 534 RAGDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQV 593

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVA 662
            + +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    + 
Sbjct: 594 LMANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLV 653

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWIDSAG- 716
            +    ++L+F I ++P++S+GKG ++ +      K+G         +    + +  +G 
Sbjct: 654 AMSSVGRMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFVSGK 713

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           R      +D+  + G+R   GS + +G 
Sbjct: 714 RKITLKPSDIDNYRGERARKGSQLVRGL 741


>gi|256370830|ref|YP_003108654.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007414|gb|ACU52981.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331]
          Length = 816

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 225/760 (29%), Positives = 380/760 (50%), Gaps = 16/760 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +  T    NV+ + L+  +E  +L Y+LS I  RA+PD RDG KPVHRRI+++M + G
Sbjct: 1   MPDEPTPDASNVELIELQEEMERSFLEYSLSVIIARALPDARDGLKPVHRRILYSMYDAG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GD 124
                   K A++VG+V+ + HPHGD ++YD+LVR+AQ F   +PLI G GNFG+ D   
Sbjct: 61  YRPDRPHVKCAKVVGDVMSRFHPHGDAAIYDALVRMAQDFSLLHPLIDGHGNFGSPDPST 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTE R+  +A  +L G+DED VDF   Y+ +  EP V P++FPNLL NG+ GIA
Sbjct: 121 GPAASRYTECRLAPIALELLAGIDEDTVDFVPNYDSQTVEPSVLPARFPNLLVNGSQGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IPSHN+ E+ +A   LID+PE ++++L+ ++ GPDFPTGGII+  R+ I ++YR
Sbjct: 181 VGMATQIPSHNLGEVVDAIAYLIDHPEATVDELMRFVPGPDFPTGGIIL-GRDGIRDAYR 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA   +EE   G + IVVTEIP+Q     + +KI  L+  K +  + D+++ 
Sbjct: 240 TGRGSVKLRAVATIEEARSG-YQIVVTEIPFQTSVEVIADKIRHLVEEKLLEGIRDMKNF 298

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SA      +    R  +P++++ +++ L+ ++T FP+ M  L     P+ + L G+ + +
Sbjct: 299 SAGSETRFVIELKRDANPNVVLNNLYRLTPLQTSFPIQMLALVD-GAPRTLNLLGLCQIY 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII----RNEDKPKPVMVSR 420
           + H+REV+ RRS FR+     R+ I++GLL     +D +IA I            +M   
Sbjct: 358 VDHQREVIRRRSEFRLGKARERLHIVEGLLSCIDQLDAVIATIRASEDRAAARAALMAEP 417

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F  +E Q + IL++ L  L +L   +++ E   L A   +++++L   ++    +  E+ 
Sbjct: 418 FGFSELQANHILDMTLGRLTRLGREELEEEAATLRATIAELEAILADAQRLSAVVKDEML 477

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
                + ++             +          ++      +        ++       +
Sbjct: 478 AATAEYRQARRTRFEVDPGDFAAEDLIEDEPIVVLISRSGYIKAVPESSFKAQGRGGRGV 537

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +   + +    R+L+ S+ G+ Y L    L        G A+  L+ L  
Sbjct: 538 VGARVKDEDEIAHVISSSMLSRLLVFSSRGRVYQLRGYELPKLERSARGTALVNLVPLAD 597

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ I +      +     L+  +  G       +E   + R G   + V  ++++  VV 
Sbjct: 598 DERITSVMGTKDFPEDADLVFFTRNGMVKRTAMAEYARSRRDGIIAIDVRGDDELVSVVV 657

Query: 656 VTGDHV-AVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWID 713
            T +H   V  +  ++L F + ++    R   GVR     DG         I +G+  + 
Sbjct: 658 ATEEHDGVVFTKRGQVLRFPLAEVRRTGRATAGVRSIRRADGDWIVAGGL-IEDGVEVLL 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              R Y +        +  RGG G        R G+ +++
Sbjct: 717 VTSRGYGKRTPLDSFPVHHRGGAGIRGIGLTERKGELVAA 756



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 8/197 (4%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                V  +        +     + A+  +  D L   + A      ++ +  G+    P
Sbjct: 620 TRNGMVKRTAMAEYARSRRD--GIIAIDVRGDDELVSVVVATEEHDGVVFTKRGQVLRFP 677

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI----I 632
              +    G   A    I       IV   + +   ++L+V+S+G               
Sbjct: 678 LAEVRR-TGRATAGVRSIRRADGDWIVAGGLIEDGVEVLLVTSRGYGKRTPLDSFPVHHR 736

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
                    L     E +        D V +V    +++   I  I    R   GV+L S
Sbjct: 737 GGAGIRGIGLTERKGELVAAAFVRPEDEVLIVSSQGQMIRVRIGDISNQGRYATGVKLIS 796

Query: 692 YKDGGISDVICFKICEG 708
            +       +      G
Sbjct: 797 LQAEESVASVGVVPESG 813


>gi|254450619|ref|ZP_05064056.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238]
 gi|198265025|gb|EDY89295.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238]
          Length = 918

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 254/852 (29%), Positives = 397/852 (46%), Gaps = 112/852 (13%)

Query: 4   DNISNSNTLVEENVK----AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           +   N+  +  E        +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++
Sbjct: 6   ETPENTEEMPPERPVYDGPQISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILY 65

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM E G      ++KSAR VG+V+GK HPHGD ++YD+L R+AQ F    PL+ GQGNFG
Sbjct: 66  AMYEAGNTHDKPYRKSARAVGDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFG 125

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD+ AA RYTE RM + A  +L  +D+D VDF+D Y+ +D EP V PS+FPN+L NG
Sbjct: 126 SMDGDNPAAMRYTEVRMDKPAAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPNMLVNG 185

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +A L LI+NP+++ E L+EYI GPDFPTGGI++  R   
Sbjct: 186 AGGIAVGMATNIPPHNLGEVIDACLGLIENPDLTSEDLIEYIPGPDFPTGGIML-GRTGA 244

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG    RA+   EE+ +  + I++TEIPYQV KS +I++IAE    K+I  + 
Sbjct: 245 RKAYLEGRGSVITRAKTHTEEIRKDRFAIIITEIPYQVNKSTMIDRIAEAARDKKIEGIS 304

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            ++DES  +   V+    R    ++++  +F  + M+T F  NM  L+ G  P+ + L  
Sbjct: 305 HVQDESDRNGVRVVIELKRDATAEVVLNQLFRFTPMQTYFGCNMLALN-GGRPETLTLRR 363

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------- 412
            L  +L  R +V+ RR++F +     R  +L GL +A  N+DE++A IR           
Sbjct: 364 FLTSFLDFREDVVIRRTAFELNKARDRAHVLCGLAVAVSNVDEVVATIRASADAPSARAA 423

Query: 413 ----------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         ++L+E Q  AIL LRL+ L ++   ++  E
Sbjct: 424 LMTRAWPAAEILPFILLIDDPTHPANADGTYNLSEIQARAILELRLQRLTQIGVKEVTDE 483

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           L+ L  + ++  ++L S ++    I  E+ E K +F+       RRT   + S   +   
Sbjct: 484 LEELAGKIKEYLAILASRERIMQIITDELAECKTLFAVP-----RRTQIVDWSGDME--- 535

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +IE + + V ++  G+I+          K     +S    KE D +     A+T  +
Sbjct: 536 DEDLIESQDMVVTVTETGYIKRTALVDFRAQKRGGKGVSGGSLKEDDVVTTLFVANTHTQ 595

Query: 563 ILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKL 614
           +L  +TDG  Y L    L        G+AI  ++ +     I      D         ++
Sbjct: 596 LLFFTTDGMVYKLKTWRLPQGSRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQI 655

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKV-TGDHVAVVGENRKL 670
           +  +S G     + S+     R GK  +K    +   ++         D V +V  + + 
Sbjct: 656 VFATSAGTVRRNKLSDFTKVMRNGKIAMKFEGENEGVQLINARICSDDDDVMLVTNSGRA 715

Query: 671 LIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVICFK------------------------ 704
           + F+   +    SR   GVR    K       +                           
Sbjct: 716 IRFASTDVRVFNSRASLGVRGIRLKGDDKIVSMSVIRHFEAESDERAAYLKMRRAMAGLA 775

Query: 705 -----------------------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                                         +        +  +     L  RGG+G    
Sbjct: 776 DDAEIEDEDVTAGNITQERYAEMSASENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAM 835

Query: 742 KGFPRSGKFLSS 753
               R G+ ++S
Sbjct: 836 DKAMRGGEIVAS 847



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 5/102 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           S   +L +++ G+  +    +     R G     +       ++     V   D + +  
Sbjct: 801 SENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAMDKAMRGGEIVASFPVEMDDQIMLAT 860

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
              + +   ++ I   SR   GV++ +     I   + +   
Sbjct: 861 SKGQSIRVPVEGISFRSRSAGGVKVFNTGKNEIVVSVAYIAD 902



 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++  G      + +       G  +  +       +IV +F  +   ++++ +SKG + 
Sbjct: 807 TITAGGSGKLSSSHDYPLRGRGGMGVTAMDKAMRGGEIVASFPVEMDDQIMLATSKGQSI 866

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
            V    I   +R   G         E +  V  +  
Sbjct: 867 RVPVEGISFRSRSAGGVKVFNTGKNEIVVSVAYIAD 902


>gi|167646833|ref|YP_001684496.1| DNA gyrase subunit A [Caulobacter sp. K31]
 gi|167349263|gb|ABZ71998.1| DNA gyrase, A subunit [Caulobacter sp. K31]
          Length = 922

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 243/852 (28%), Positives = 368/852 (43%), Gaps = 101/852 (11%)

Query: 1   MGVDNI----SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           M  D      S ++     +V  +++   L   YL YA+S I  RA+PD RDG KPVHRR
Sbjct: 1   MSDDQNTIPGSPASPASRGDVTPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           ++ +M E G     ++ KSAR+VG+V+GK HPHGD S+Y +LVR+ Q F     LI GQG
Sbjct: 61  VLFSMHEQGQTPERSYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQG 120

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGD  AA RYTE RM   A  +L  +D+D VDF+D Y+ ++ EPVV PS+ PNLL
Sbjct: 121 NFGSVDGDMPAAMRYTECRMAPPAMSLLADLDKDTVDFQDNYDGKEQEPVVLPSRIPNLL 180

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG  GIAVGMAT+IP HN+ EI +A L +ID P+++ ++LL+ + GPDFPTGG I+  R
Sbjct: 181 VNGAGGIAVGMATNIPPHNLGEIVDACLLMIDEPDVTTDRLLDLVPGPDFPTGGEII-GR 239

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
               ++   GRG   +R    VEE+  G   I++T IPYQV KS L+E IAE++  KRI 
Sbjct: 240 AGPRQALLTGRGSVIMRGLATVEEIRTGREAIIITAIPYQVNKSNLVEYIAEMVRDKRIE 299

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + DIRDES  D   ++    R    ++++  ++  + +++ F +NM  L+    P  M 
Sbjct: 300 GVSDIRDESNRDGMRIVVELKRDASGEVILNQLYRFTALQSSFGVNMLALN-RGRPSQMG 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           L  ++  ++  R EV+ RR+ F +     R  +L GL IA  NIDE I IIR+   P   
Sbjct: 359 LRELIDIFVKFREEVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEA 418

Query: 417 MVSRFS-----------------------------LTENQVDAILNLRLRSLRKLEEYQI 447
                +                             LT+ Q  AIL L L  L  L   +I
Sbjct: 419 RERLVAKAWPAGDMLPLVELIADPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEI 478

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
            +E  +L    +    LL+        +  E+ EV+E F+                    
Sbjct: 479 GNEAASLAEAIKGFLDLLSDRANIMAVVREELVEVREKFAIPRRCQIVDGDADVEDEDLI 538

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V  +     R+        S +  K  D++     A T   +L  +
Sbjct: 539 VREDMVITVTLGGYVKRTPLAAYRTQHRGGKGKSGMATKTEDAVTRVFSASTHAPLLFFT 598

Query: 568 TDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSS 619
           + GK Y +    L  G     G+A   L+ +   + I +               ++  + 
Sbjct: 599 SGGKVYKMKVWRLPQGVANSRGKAFVNLLPIEPGETITSILTLPEDEATWDGLDVMFATR 658

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQI 678
            G+    + S+ +   R GK  +K+   + +  V     G  + +     + + FS D++
Sbjct: 659 SGSVRRNKLSDFVDVRRNGKIAMKLDEGDGIIGVAVCDSGKDILLNTAAGRCIRFSTDEV 718

Query: 679 PEM-SR-GKGVRLQSYKDGGISDVI----------------------------------- 701
               SR   GVR      G     +                                   
Sbjct: 719 RVFASRDSTGVRGVRLAPGDSVISMSVLRNVDATPAERAAYLKHQRAMARAMGEEGDEAP 778

Query: 702 -CFKICEGLT-------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
              +  E                       +  +   + +  +        RGG G    
Sbjct: 779 AAVEDSEEDVGEASLTPERIAELGAAEEILLTVSSEGFGKRTSAYDYRRTGRGGQGLTAQ 838

Query: 742 KGFPRSGKFLSS 753
               R GK + S
Sbjct: 839 DLSKRGGKLVGS 850



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVTG-DHVAVVG 665
           +   LL VSS+G        +     R G+            K+     V   D + +V 
Sbjct: 804 AEEILLTVSSEGFGKRTSAYDYRRTGRGGQGLTAQDLSKRGGKLVGSFPVDESDQILLVT 863

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +  +L+   + QI   +R  +GV +           +
Sbjct: 864 DAGQLIRVPVSQIRVAARNTQGVTIFRTAADEHVVSV 900


>gi|126729838|ref|ZP_01745651.1| DNA gyrase subunit A [Sagittula stellata E-37]
 gi|126709957|gb|EBA09010.1| DNA gyrase subunit A [Sagittula stellata E-37]
          Length = 911

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 256/833 (30%), Positives = 405/833 (48%), Gaps = 108/833 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI+ AM E G     +++KSA+ 
Sbjct: 22  SISIENEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHEGGYTPDKSYRKSAKS 81

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+G  HPHGD ++YD+LVR+AQ F    PLI GQGNFG++DGD  AA RYTE+R+ +
Sbjct: 82  VGEVMGNYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAMRYTESRLAK 141

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ ++ EP V P++FPN+L NG  GIAVGMAT IP HN+ E
Sbjct: 142 SALQLLSDIDKDTVDFQDNYDGKEREPTVLPARFPNVLVNGAEGIAVGMATRIPPHNLGE 201

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LAL+DNP++S E L+E++ GPDFPTGG ++  R    ++Y  GRG   +RA   V
Sbjct: 202 VIDATLALMDNPDLSSEDLMEWVKGPDFPTGG-LMLGRSGARKAYLEGRGSVIIRAATTV 260

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV++ IPYQV K+ +IE+IAE    K+I  +  ++DES  D   V+    R
Sbjct: 261 EEIRKDRYAIVISAIPYQVNKATMIERIAEAARDKKIEGIAHVQDESDRDGVRVVVELKR 320

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  ++  + M+T F  NM  L+ G  P+ + L G L  +L  R +V+ RR+++
Sbjct: 321 DATAEVVLNQLYRFTPMQTSFGCNMLALN-GGKPEQLTLRGFLSAFLDFREDVIARRTAY 379

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------------------- 412
            ++    R  +L GL +A  N+DE++A IR+                             
Sbjct: 380 LLRKARERSHVLCGLAVAVSNVDEVVATIRSSADAPEARQRLMERRWPAQDILPYIALID 439

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               K      ++L+E Q  AIL+LRL+ L ++   ++  EL++L A+ +    +L+S +
Sbjct: 440 DPTHKANEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEDLAAKIKDYLEILSSRE 499

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+  ++E F+       RRT   + +        + +IE+E + V ++  G+
Sbjct: 500 RIMGIIREEMTAIREEFAVP-----RRTEIVDWAGDMD---DEDLIEREDMVVTVTAGGY 551

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          K     LS    KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 552 IKRTALADFRAQKRGGKGLSGGGLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 611

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +SKG+      S+   
Sbjct: 612 LGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEDEWDDLQIVFATSKGSVRRNRLSDFTN 671

Query: 634 NTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SR-GKGV 687
             R GK  +K   E++   +         D V +V  + + + F + ++    SR   GV
Sbjct: 672 VMRNGKIAMKFEGEDENTRLINARICSEEDDVMLVTNSGRAIRFPVPEVRVFNSRNSTGV 731

Query: 688 RLQSYKDGGISDVIC------------------------FKICEGL-------------- 709
           R    K+G     +                             EG               
Sbjct: 732 RGIRLKNGDEVVSMSVIRHFEAESDERASYLKMRRLMAGVTEDEGSDEDGNADAPLEQER 791

Query: 710 ---------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      +    R   +  +     +  RGG G    +   R G  ++S
Sbjct: 792 YAEMSAAENLILTITARGLGKLSSSHDYPVRGRGGQGVTAWEKSMRGGDIVAS 844



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 35/106 (33%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK----VSSEEKMKLVVKVTGDHVAVVG 665
           +   +L ++++G   +    +     R G+        +   + +       GD + +  
Sbjct: 798 AENLILTITARGLGKLSSSHDYPVRGRGGQGVTAWEKSMRGGDIVASFPVEQGDQIMLAT 857

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
              + +   +D I   SR   GVR+ +         + +   +   
Sbjct: 858 STGQSIRVPVDGISFRSRSAGGVRVFNTGAEETVVSVAWIADQADE 903



 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 50/169 (29%), Gaps = 3/169 (1%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           G R     EV         +A  ++    + +       +    S +             
Sbjct: 733 GIRLKNGDEVVSMSVIRHFEAESDERASYLKMRRLMAGVTEDEGSDEDGNADAPLEQERY 792

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             + A     IL ++  G      + +       G+ +          DIV +F  +   
Sbjct: 793 AEMSAAEN-LILTITARGLGKLSSSHDYPVRGRGGQGVTAWEKSMRGGDIVASFPVEQGD 851

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           ++++ +S G +  V    I   +R   G       +EE +  V  +   
Sbjct: 852 QIMLATSTGQSIRVPVDGISFRSRSAGGVRVFNTGAEETVVSVAWIADQ 900


>gi|190149891|ref|YP_001968416.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263215|ref|ZP_07544835.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915022|gb|ACE61274.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871432|gb|EFN03156.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 748

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 263/746 (35%), Positives = 441/746 (59%), Gaps = 23/746 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAY 129
            +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAM 123

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT
Sbjct: 124 RYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMAT 183

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G 
Sbjct: 184 DIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGS 243

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++RA W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  + 
Sbjct: 244 IKMRAVWKKEDGE-----IVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHEN 298

Query: 310 --RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
             RIV+ P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  
Sbjct: 299 PIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKTLHTILTEWLVF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR  + RR + R+  I  R+ IL+GL+IA+LNIDE I IIRNED+PK  +++RF+L+E Q
Sbjct: 359 RRTTVTRRLNHRLDKILNRLHILEGLMIAFLNIDEAIEIIRNEDEPKTALMARFNLSEAQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AILNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   ++F+
Sbjct: 419 AEAILNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKVFA 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ 
Sbjct: 479 SP-----RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRA 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD      +  +   ++ L + G+AY L   +L S R  GE +   I L     +    +
Sbjct: 533 GDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLM 592

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVV 664
            +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    +  +
Sbjct: 593 ANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAM 652

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWIDSAG-RS 718
               ++L+F I ++P++S+GKG ++ +      K+G         +    + +  +G R 
Sbjct: 653 SSVGRMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFVSGKRK 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                +D+  + G+R   GS + +G 
Sbjct: 713 ITLKPSDIDNYRGERARKGSQLVRGL 738


>gi|322514216|ref|ZP_08067278.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Actinobacillus ureae ATCC
           25976]
 gi|322119909|gb|EFX91918.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Actinobacillus ureae ATCC
           25976]
          Length = 748

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 266/748 (35%), Positives = 443/748 (59%), Gaps = 23/748 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   STEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGM
Sbjct: 122 AMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+ EA++ L++NP  S+ +L+  + GPD+PT   I+  +  I + Y  G+
Sbjct: 182 ATDIPPHNINELVEASVMLLENPRASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGK 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  
Sbjct: 242 GSIKMRAVWKKEDGE-----IVISALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENSIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           A RR  + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E
Sbjct: 357 AFRRTTVRRRLNYRLDKILNRLHILDGLIIAFLNIDEVIEIIRNEDEPKTALMARFNLSE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   ++
Sbjct: 417 AQAEAILNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKV 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L +
Sbjct: 477 FASP-----RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD      H  +   ++ L + G+AY L   +L S R  GE +   I L     +   
Sbjct: 531 RAGDGYLAHAHGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVA 662
            + +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    + 
Sbjct: 591 LMANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLV 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWIDSAG- 716
            +    ++L+F I ++P++S+GKG ++ +      K+G         +    + +  +G 
Sbjct: 651 AMSSVGRMLVFPITELPQLSKGKGNKIINISAPAAKEGNELLARLLLVKPTQSLVFVSGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           R      +D+  + G+R   GS + +G 
Sbjct: 711 RKITLKPSDIDNYRGERARKGSQLVRGL 738


>gi|51598689|ref|YP_072877.1| DNA gyrase, subunit A [Borrelia garinii PBi]
 gi|51573260|gb|AAU07285.1| DNA gyrase, subunit A [Borrelia garinii PBi]
          Length = 810

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 255/760 (33%), Positives = 423/760 (55%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    AF
Sbjct: 6   NKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLRSDKAF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYT
Sbjct: 66  KKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++ 
Sbjct: 126 EAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMA 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +
Sbjct: 186 PHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+ +EE   G   I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   +
Sbjct: 245 RARYHIEERIEGRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP ++M  ++  ++ +  F +N   L    +P+ + L+ +L E++ HR+ V+
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVD-GIPKQLNLEELLFEFIEHRKNVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++       +  +V+ F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVINIIKSSRLAKDARERLVANFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           ++L+++L+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E   +   F   
Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPARIINIIREETINLGLKFGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    +++KE I V+++ +G+++ L  +           LS
Sbjct: 484 -----RRTKII-YDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHN 599
           +    +GD + IAL  +T D + ++S +GK Y + A  +       +   +   I+L   
Sbjct: 538 SFDLNDGDEVAIALCVNTHDYLFMVSNEGKLYLINAYEIKDSSRASKGQNISELINLGDQ 597

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+T      +     LL+ ++ G     E ++  A   +G   +K++ ++ +     V
Sbjct: 598 EEILTIKNSKEFTDDSYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIV 657

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             D  V  + +     IF+   +   +RG +GV     K+G +  V    I E    +  
Sbjct: 658 LKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLAIRENPYLLII 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
           +   Y +  +       KRG  G    K   +  G  + +
Sbjct: 717 SENGYGKRLSISKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 60/173 (34%), Gaps = 7/173 (4%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S  +  +   + D +  A      ++++ LS  G A+   + ++       + +  +  L
Sbjct: 637 SRGVIVIKLNDKDFVTSAEIVLKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM-KL 695

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MK 651
                 V          LL++S  G    +  S+I    R    +      +K     + 
Sbjct: 696 KEGDLFVKVLAIRENPYLLIISENGYGKRLSISKISELKRGATGYTSYKKSDKKAGSVVD 755

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +     D + +V +  K L     ++ E  +  +G+++    +  +  V  F
Sbjct: 756 AIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSVSKF 808


>gi|299135952|ref|ZP_07029136.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8]
 gi|298602076|gb|EFI58230.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8]
          Length = 978

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 228/757 (30%), Positives = 375/757 (49%), Gaps = 76/757 (10%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M EMGL F   + KSA++
Sbjct: 52  SINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYGMQEMGLQFNKKYTKSAKV 111

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG V+G  HPHGD ++YD++VRLAQPF  RYPLI GQGNFG++DGD  AA RYTE+RMT+
Sbjct: 112 VGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYPLIDGQGNFGSVDGDPPAAMRYTESRMTR 171

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D D VDF   Y+E  SEP V P++ PNL+ NG++GIAVGMAT+IP HN+ E
Sbjct: 172 LAGEMLADIDSDTVDFTPNYDESTSEPTVLPARIPNLIVNGSTGIAVGMATNIPPHNLTE 231

Query: 199 ICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           +  A +AL+   +      +E +LE++ GPDFPTGG +   R ++V++Y+ GRG F +RA
Sbjct: 232 VLNATIALLQKEKGETRSDLEIVLEHVKGPDFPTGGFLY-GRGNLVQTYKTGRGRFMMRA 290

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   I+ TEIPYQV KS LI++IAEL+  K +  + D+RDES  D   ++ 
Sbjct: 291 KCGMEQITGGRQAIICTEIPYQVNKSNLIKRIAELVTEKIVDDISDVRDESDRDGMRIVI 350

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++  + M+  F +   +      P+ +PL+  +  ++ HR +V+ R
Sbjct: 351 ELKRGAQQEIVLNQLYKHTSMQESFSMIF-LAVHNGQPKELPLNEAIWAFIEHRIDVVRR 409

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL----------- 423
           R++F +     R  +L G  IA  ++D++I IIR          + FS            
Sbjct: 410 RTAFLLNKAREREHVLLGYQIALDHLDQVIRIIRQSSSRADARENLFSYFSNRRINLRGT 469

Query: 424 -----------------------------------TENQVDAILNLRLRSLRKLEEYQIK 448
                                              +  Q+DAIL L+L  L +L   ++ 
Sbjct: 470 ELQGVTLDPAKYAIDLTGGSVSAQLSNNTAGTLILSYRQIDAILELQLYRLTQLSIDELL 529

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +EL  +     + +S+L S K+    I  E+ ++++ +  +     RRTT  + S     
Sbjct: 530 NELRAVRDNISEYESILASEKKLRRVIIKELEDIRDKYGDA-----RRTTILDESTE--- 581

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTT 560
              + +I  E + V +SN G+++     +             +  +E D +   +   T 
Sbjct: 582 LTLEDLIADEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRLGMKTREEDFVAQLIIDSTH 641

Query: 561 DRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKL 614
             +L  +  G+ Y L    +      G G+A+  L+DL   + +VT        +    +
Sbjct: 642 AYLLCFTNSGRVYWLKVYEIPDIGAAGKGKAMASLVDLQPGEKVVTILPVKDLAEEGKYV 701

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKLLIF 673
           L  +  G        +      +G   + +  E+++       G+ V  +   +   + F
Sbjct: 702 LFATRNGTVKKTALKDFSNVMARGIIAIGIDKEDELITARITDGEQVIFLATHDGMAIRF 761

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           +   +  M R   G R  + K                
Sbjct: 762 NEQDLRPMGRPAFGNRGITLKKNDYVIGAAVTPSNEA 798



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 7/110 (6%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRK 669
           +L VS  G     +       +R GK  + + S  K+  V  +        + V+ +  K
Sbjct: 867 ILSVSDNGYGKRTDVDSYRLQSRGGKGVINMKSTPKIGKVASIQLVDDTTEMMVISQFGK 926

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           ++      +    R   GV+L                 E           
Sbjct: 927 IIRIDTKSVRAAGRATMGVKLLDLDTDDKVAAAMVIPPEDP--KSPTENG 974



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/115 (11%), Positives = 29/115 (25%), Gaps = 5/115 (4%)

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGIS 698
              K+   ++   +       +  V +N       +D     SRG KGV           
Sbjct: 849 AAAKLQQLDEKLGLTPCL---ILSVSDNGYGKRTDVDSYRLQSRGGKGVINMKSTPKIGK 905

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 + +    +  +        +        R  +G  +        K  ++
Sbjct: 906 VASIQLVDDTTEMMVISQFGKIIRIDTKSVRAAGRATMGVKLLD-LDTDDKVAAA 959


>gi|310642462|ref|YP_003947220.1| DNA topoisomerase iv, a subunit [Paenibacillus polymyxa SC2]
 gi|309247412|gb|ADO56979.1| DNA topoisomerase IV, A subunit [Paenibacillus polymyxa SC2]
          Length = 820

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 218/763 (28%), Positives = 393/763 (51%), Gaps = 30/763 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E      L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G     A+
Sbjct: 3   LSEQFLPAYLEEMVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPEKAY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+V+G  HPHGD S+YD +VR+AQP+   + L+ G GN+G+ D D AAA RYT
Sbjct: 63  RKSAKTVGDVMGNYHPHGDSSIYDGMVRMAQPWKMSHVLVDGHGNWGSQDDDPAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +++  V F+D ++    EPVV PS++PNLL NG+SGI+ G AT IP
Sbjct: 123 EARLSPIAMEMLRDIEKRTVLFKDNFDNSAKEPVVLPSRYPNLLVNGSSGISAGFATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +H+++E+ +A +A+++ P+I +E+++ +I GPDFPTGG ++   E I ++YR G+G   +
Sbjct: 183 THSLREVIDATIAVMEKPQIELEEIMTFIKGPDFPTGG-LIMGGEGIKDAYRTGKGRIYI 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  ++ +  G   +V+TEIPYQV KSRL+  +  + + K++  + ++RDES  +   +
Sbjct: 242 RSKTEIQSLRGGKQQLVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++  +   +D++  +  NM  +   + P  + L  IL+ ++AH+REV+
Sbjct: 302 VVELKKEADAEGILAYLLKKTDLQVAYNFNMVAIV-NKAPHQLGLKSILEAYIAHQREVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R  F ++  + R  +L+GL+ A   +DE+IA I+        +  +   F  +E Q D
Sbjct: 361 TNRIKFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFSERQAD 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           +IL L+L  L  LE   ++ EL ++  +  +  S+L+S ++  + I  E+ E++E +   
Sbjct: 421 SILTLQLYRLTNLEITTLEKELADIQKKITQYRSILDSDRKLISLIRKELLEIREKYG-- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-----DLSALH 544
                RR+   +    +     + M+  E + + +S  G+++     S      + S   
Sbjct: 479 ---IDRRSEI-QGEVEEIKVNLEVMVAAEDVLLTLSKDGYVKRTSMLSFTRSGGERSNSG 534

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
            KEGD +   L  +T D +L+ +  G+ + LP   +   +       I  +I L     I
Sbjct: 535 VKEGDYITQFLDVNTLDVLLVFTQRGQYFLLPVHQVPEYKWKEPGTPIVNVISLAKEDRI 594

Query: 603 VTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           V+     +       L+ V+ KG     E +E            KV+ ++++  V     
Sbjct: 595 VSVIPIKNMEEIGKSLVFVTKKGQVKRTELTEYATKRSSAVAACKVAGDDEILSVTLSDN 654

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + ++      + F   ++  M R   GV+     +G       +   +    +    
Sbjct: 655 SKDIMLITRAGMSIRFKEQEVNAMGRVSAGVKGIQLAEGDEIVAALWVEEDEGEVLVLTE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLV--PKGFPR---SG-KFLSS 753
             Y +    L      RGG G      K   R   +G + +++
Sbjct: 715 SGYGKRTLLLDYPSQGRGGKGISTFEFKEGKRVRSNGTRIVAA 757


>gi|262277206|ref|ZP_06054999.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114]
 gi|262224309|gb|EEY74768.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114]
          Length = 848

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 232/792 (29%), Positives = 390/792 (49%), Gaps = 52/792 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +N+   ++   ++  YL+YA+S I  RA+PD RDG KPVHRRII+AM + G D+   
Sbjct: 1   MSSKNLGNRNISDEMKSSYLSYAMSVIVSRALPDARDGLKPVHRRIIYAMYKGGYDWSKQ 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSAR+VG+VIGK HPHGDQ+VYD+LVRLAQ F     L+ GQGNFG++DGD AAA RY
Sbjct: 61  FRKSARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMNTKLLEGQGNFGSLDGDRAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++ +++E ++  +D++ V+F++ Y++ ++EPVV P++FPNLL NG  GIAVGMAT+I
Sbjct: 121 TETKLAKISEFLISDIDKNTVNFQNNYDDTETEPVVLPAQFPNLLVNGAGGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  LA +DN +IS+ ++++ I GPDFPTGGII+  +  I   Y  GRG  +
Sbjct: 181 PPHNLGEVIDGTLAYLDNNKISVSEIMKKIPGPDFPTGGIIL-GKNEIKNGYEKGRGSIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R    +EE  R    I++  +PYQV K+ LIEKIA LI  K++  + D+RDES ++   
Sbjct: 240 IRGEIEIEEGSRDRKLIIIKSVPYQVNKTVLIEKIAFLIRDKKLEGIADLRDESNKEGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    + ++ ++++  ++  S +E+ F  N   ++  + P+++ L   ++ +++ R + 
Sbjct: 300 IVIELRKGVNQEIIINQLYKFSPLESSFGFNTLAIN-EKKPELLNLKQFIEIFVSFREKT 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------- 415
           + +R+ F ++    R  IL GL IA  NIDEII+IIR    P                  
Sbjct: 359 IIKRTLFDLKKAKDRSHILIGLFIAIENIDEIISIIRKSKTPNDAKVSLLKKTWNFKKSK 418

Query: 416 -----------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                        +  + L++ QV AIL+LRL+ L  +   +I +EL  L     K+  +
Sbjct: 419 LNKNILNINELSDLDHYQLSDFQVKAILDLRLQKLTAIGYDEINNELSELYELIIKLKKI 478

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           LN   +  N I  E+  +K  FS                       Q  +       +  
Sbjct: 479 LNDKTELINLIKNELIGIKNKFSTPRKTKIVDQITSVEVEDVIQKEQVIVTVTNKGYIKR 538

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-- 582
           +    I++ K        +  +E D +      +T   +L  S  G  Y L    +    
Sbjct: 539 TPITNIKAQKRGGRGKIGIVTREEDFVTQLFSVNTLTPVLFFSNKGIVYKLKTWKIPEGS 598

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTR 636
            +  G+++  L+ +++   + +               ++ ++  G        +      
Sbjct: 599 NQSKGKSLHNLLPIDNQSYVSSIMPLPENENEWSDLNIVFITKLGKIRKNNLEDFKNIQS 658

Query: 637 KGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRLQSYK 693
            GK  +K+  E+++  V  +   + V +   N K L  +  +I     R  KGV+  + K
Sbjct: 659 NGKIAMKLDKEDEIVSVKLLKANEDVMINSYNGKSLRVNSKKIRLFKGRSSKGVKGMNLK 718

Query: 694 DGGISDVICFKIC------------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           +      +                 +    +      Y +  +        RGG G +  
Sbjct: 719 NNDRVISLSILNPNIISSDKDEMKSKEEFILTITENGYGKRSSAYEFRETGRGGQGIINI 778

Query: 742 KGFPRSGKFLSS 753
               R+G   +S
Sbjct: 779 STTERNGNVAAS 790



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 68/201 (33%), Gaps = 19/201 (9%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                      S    A+   + D +         + +++ S +GK+  + +  +   +G
Sbjct: 647 KNNLEDFKNIQSNGKIAMKLDKEDEIVSVKLLKANEDVMINSYNGKSLRVNSKKIRLFKG 706

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDS-------------TCKLLVVSSKGNAFIVEESEII 632
                   ++L +N  +++  + +                 +L ++  G        E  
Sbjct: 707 RSSKGVKGMNLKNNDRVISLSILNPNIISSDKDEMKSKEEFILTITENGYGKRSSAYEFR 766

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
              R G+  + +S+ E+   V       + D + +V    +++   +++I    R  +GV
Sbjct: 767 ETGRGGQGIINISTTERNGNVAASFPIKSDDDIMLVTSKGQMIRVKVNEIRVAGRNTQGV 826

Query: 688 RLQSYKDGGISDVICFKICEG 708
           R+          V   ++ + 
Sbjct: 827 RIFKTSSDEKV-VTAVRLADN 846


>gi|289207717|ref|YP_003459783.1| DNA topoisomerase IV, subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288943348|gb|ADC71047.1| DNA topoisomerase IV, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 753

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 273/759 (35%), Positives = 444/759 (58%), Gaps = 25/759 (3%)

Query: 6   ISN--SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +++  + +L   + + + L+   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE
Sbjct: 1   MTDIETPSLFANSGEQLPLKDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D 
Sbjct: 61  LGLSATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDD 120

Query: 124 -DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
             S AA RYTE+R+++ A+L+L  + +  VD+   ++    EP V P++ PN+L NG SG
Sbjct: 121 PKSFAAMRYTESRLSRYAQLLLSELGQGTVDWVPNFDGALDEPKVLPARLPNVLLNGGSG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT IP HN++E+  A + L+++P+ ++ +L E++  PDFPT   I+     + + 
Sbjct: 181 IAVGMATDIPPHNLREVAAACVHLLEHPKATLAELCEHLPAPDFPTEAEIISPPAELRKV 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G+G  R RAR+      R    IVVT +P+QV  ++L+E+IA  I AK++P++ED+R
Sbjct: 241 YETGQGSIRARARYE-----REGDDIVVTALPHQVSGAKLLEQIASQIRAKKLPMVEDLR 295

Query: 303 DESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES  +   R+V+ P++  +D + LM  +F  +D+E  + +NMNV+ +   PQV  L G+
Sbjct: 296 DESDHEHPTRLVITPRSNRVDVEALMAHLFATTDLEKTYRVNMNVIGLDGRPQVRDLAGL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL  R E + RR  +R++ +  R+ +L+GLLIAYLNIDE+IAIIR  D+PKP ++SR
Sbjct: 356 LGEWLEFRIETVRRRLQWRLEKVQARLHVLEGLLIAYLNIDEVIAIIREYDQPKPELMSR 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L++ Q +AIL L+LR L KLEE +I+ E D L  E+++++  L S ++   Q+  EI 
Sbjct: 416 FGLSDIQAEAILELKLRHLAKLEEMKIRGEQDELATERDQLEKTLGSERRLRTQVRREIE 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           +    +        RR+   + + A +A  + A++  EP+TVV+S +GW R+ K H VD 
Sbjct: 476 KDAADYGDE-----RRSPLVQRAAA-QALDESALVPTEPLTVVLSEKGWARAAKGHDVDA 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
             L++K GD+ + A+   +   +  + + G+ YT+ A  L S RG GE +   ++     
Sbjct: 530 RGLNYKAGDAFQAAVTGRSNQPVAFIDSTGRTYTIAAHTLPSARGQGEPLSGRVNPPEGA 589

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
             V         + L+ +  G  F+ +  +++   + GK  L V +   +     V    
Sbjct: 590 RFVGMATGAEEDRWLLGTDHGYGFVAKLGDLLGRQKAGKNVLTVPAGAAVLQPAPVRNPH 649

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQS-----YKDGGISDV-ICFKICEGLTW 711
            DH+AVV     LL+F   ++PE++RGKG +L        KDG    + +     +    
Sbjct: 650 EDHIAVVTTRGYLLLFPATELPELARGKGNKLIGIPSAALKDGSERVLDVAVLGPQDTLV 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           + +  R       +   ++G+R   G  +P+G+  + + 
Sbjct: 710 VHAGKRFKALVPAEWAEYVGERARRGRQLPRGYQNANRL 748


>gi|75909066|ref|YP_323362.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413]
 gi|75702791|gb|ABA22467.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413]
          Length = 835

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 245/785 (31%), Positives = 391/785 (49%), Gaps = 47/785 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLSTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL+ G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  ++   +L  + E+ V+F   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID P+++ EKLLE I GPDFPTGG IV     I E+Y  G+G
Sbjct: 186 TNIPPHNLGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIV-GETGIREAYITGKG 244

Query: 249 GFRVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G  +R    VEE+  G        I+VTE+PYQV K+  IEK+AEL+   R+  + D+RD
Sbjct: 245 GIVLRGVATVEEIPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R  +P  +++ ++  + ++T F   +  +     P+ + L  +L+E
Sbjct: 305 ESDREGMRVVIELKRDTNPQEVLQHLYHQTALQTNFGAILLAIV-EGQPRQLSLRQLLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSR 420
           +L  R   L RR S+ +     R+  ++GLL A  N+DE+I I+R             S+
Sbjct: 364 FLNFREHTLNRRYSYELGKAASRLNTVEGLLKALSNLDEVIEILRQAPDGSTAKVTLCSQ 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L+E+Q DAIL++ LR L  LE+  ++ E   L  +   +D LL+  K+    +  ++R
Sbjct: 424 LDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQITLLDRLLSDRKELLKALKKDLR 483

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ-------------AMIEKEPITVVISNR 527
            +K  +           +  E+ +  KA                  +   E   + I++R
Sbjct: 484 SLKRKYGDPRRTKLGAKSLEELPKNKKADKHNSSAKTDEDTENLSPLEPAEEAILEITHR 543

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           G++R ++            E D +       T   +L+L+  GK Y +  G++    G  
Sbjct: 544 GYLRRIQPGKKSKVENGLLEHDFIIQTNITDTHKELLVLTNGGKLYPVKVGDIPLTTGRS 603

Query: 588 EAIQLLIDL------NHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKG 638
                LI +       + + +V+  +        +L++++ +G    +   E+   TR+G
Sbjct: 604 PRGTPLITMLTTTAQGNQEPVVSRLLLPENLAAQQLILLTKQGRIKRLSLEELTNLTRRG 663

Query: 639 KTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGKGVRLQSYKDG 695
            T LK+  ++++ L      G H+ +     +LL FS +   +P M R         +  
Sbjct: 664 VTILKLKDDDELLLTQFSKAGQHLILASSGGRLLRFSANDEQLPIMGRTA----MGLQAF 719

Query: 696 GIS----DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF- 750
            +      V C    +    +      Y +           RG +G+   K   ++    
Sbjct: 720 RLLRNQCMVGCVNAAQAEYLLLVTEEGYAKRLPVNQIKSANRGDLGTQSMKFVNKTDNLA 779

Query: 751 --LSS 753
             + +
Sbjct: 780 AMVGA 784



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTCKLLVVSS 619
             ++L S+ G+     A +         A+ L    L  NQ +V          LL+V+ 
Sbjct: 685 QHLILASSGGRLLRFSANDEQLPIMGRTAMGLQAFRLLRNQCMVGCVNAAQAEYLLLVTE 744

Query: 620 KGNAFIVEESEIIANTRK--GKTFLK-VSSEEKMKL-VVKVTGDHVAVVGENRKLLIFSI 675
           +G A  +  ++I +  R   G   +K V+  + +   V   T   VA++    +++  S 
Sbjct: 745 EGYAKRLPVNQIKSANRGDLGTQSMKFVNKTDNLAAMVGANTSSEVALLTNRERVVRIST 804

Query: 676 DQIPEMSR-GKGVRLQSY-KDGGISDVI 701
           D +P + R GKG  +    +D  +  V+
Sbjct: 805 DTVPILPRDGKGETILQLNRDEKVIAVV 832


>gi|294677501|ref|YP_003578116.1| DNA gyrase subunit A [Rhodobacter capsulatus SB 1003]
 gi|294476321|gb|ADE85709.1| DNA gyrase, A subunit [Rhodobacter capsulatus SB 1003]
          Length = 913

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 250/852 (29%), Positives = 403/852 (47%), Gaps = 112/852 (13%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D   ++          VS+   ++  YL YA+S I  RAIPDLRDG KP HRRI++AM E
Sbjct: 9   DPSGDTPKRAHHAGPVVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPAHRRILYAMHE 68

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      ++KSAR VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DG
Sbjct: 69  TGNTHDKPYRKSARPVGDVMGKYHPHGDAAIYDALVRMAQDFSMSLPLLDGQGNFGSMDG 128

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM + A  +L  +++D VDF+D Y+ +D EP V P++FPN+L NG  GI
Sbjct: 129 DSAAAMRYTEVRMDKPAAFLLADIEKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGI 188

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A LALI+NP++S E L++Y+ GPDFPTG  I   R    ++Y
Sbjct: 189 AVGMATNIPPHNLGEVIDATLALIENPDLSSEALMDYVPGPDFPTGAQI-MGRGGARKAY 247

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +RA+  +EE+ +  + I++ EIPYQV K+ +IEK+A+L+  K++  +  I D
Sbjct: 248 LEGRGSVIIRAKTRIEEIRKDRFAIIIDEIPYQVNKATMIEKMADLVREKKLEGIASIAD 307

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L   L  
Sbjct: 308 ESDRVGVRVVIELKRDATADVVLNQLYRFTPLQTSFGCNMLALN-GGRPEQLTLRDFLSH 366

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------- 415
           ++A R EV+ RR+++ ++    R  IL GL +A  N+DE++A IR+   P          
Sbjct: 367 FIAFREEVVARRTAYELRKARERSHILCGLAVAVSNVDEVVATIRSSKDPAEARDRLMER 426

Query: 416 ---------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     ++L+E Q  AIL+LRL+ L  +   ++  EL  L
Sbjct: 427 RWPAHEIVEYLRLIDDPLHPVNDDGTYNLSEVQARAILDLRLQRLTAMGVQEVTDELAEL 486

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
             +     ++L S ++    IA E+REV+   +       RRT   + +        + +
Sbjct: 487 AGKIRDYLAILASRERIMAIIATELREVRAAHAVP-----RRTEIVDWAGD---LDDEDL 538

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           IE+E + V I++ G+I+          +     L+++  KE D +     A+T  ++L  
Sbjct: 539 IEREDMVVTITSGGYIKRTPLAEFRAQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFF 598

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVS 618
           +TDG  Y+L    L        G+AI  ++ +     + +    D         ++   +
Sbjct: 599 TTDGMVYSLKCWRLPLAGRTSKGKAIVNILPIPQGVSVASLMPVDEPEETWDDFQVFFAT 658

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ 677
           S G+      S+     + GK  +++     +         D + +V  + + + F + +
Sbjct: 659 SDGDVRRNALSDFAKVMKNGKRAMELPEGVTLVDTRMCHEEDDIMLVTASGRAIRFPVPE 718

Query: 678 IPE-MSR-GKGVRLQSYKDGGISDVICF-------------------------------- 703
           +     R   GVR     +G     +                                  
Sbjct: 719 VRIFKGRSSTGVRGVRLAEGDKVVSMSVIRHFEAEPWERDAFVKRYRAELGGETEDEAET 778

Query: 704 -----KICEG-----------------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                   EG                    +    +   +  +     +  RGG G    
Sbjct: 779 DRDAEDEAEGGEGVLSDARYAEMLAAQDLILTITAKGLGKISSSHSYPVRGRGGQGVTAF 838

Query: 742 KGFPRSGKFLSS 753
           +   R G  ++S
Sbjct: 839 EKSMRGGALVAS 850



 Score = 46.3 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 5/102 (4%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGENRK 669
           +L +++KG   I          R G+             +     V   D V +     +
Sbjct: 808 ILTITAKGLGKISSSHSYPVRGRGGQGVTAFEKSMRGGALVASFPVEPTDQVMLATSTGQ 867

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
            +   +  I   SR   GV++ +         +      G  
Sbjct: 868 SIRCPVAGISFRSRAAGGVKVFNTGAEEEVVSVARVADPGDD 909


>gi|90415524|ref|ZP_01223458.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90332847|gb|EAS48017.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 750

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 268/757 (35%), Positives = 438/757 (57%), Gaps = 24/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++       E ++   +   +E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MNYIVNFNSEGLERRPMSEYVEQAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+VIGK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   
Sbjct: 61  LKASAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++++ A+ +L  + +   ++R  ++    EP + P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTESKLSKYADALLSELGQGTANWRPNFDATMDEPEILPARVPNVLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+  A L ++DNP+  + +L+E+I  PD+PT   I+ S++ I   Y 
Sbjct: 181 VGMATDIPPHNLNEVVSACLHMLDNPKADVAELMEFIKAPDYPTDAEIITSQKDIQNVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+VT +P+Q   S+++E+IA  +  K++P++ED+RDE
Sbjct: 241 TGRGSIKMRAIWHREDGD-----IIVTALPFQASGSKILEQIAAQMRNKKLPMVEDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM+ +F   D+E  + +N+N++ +   P VM L  I+K
Sbjct: 296 SDHENPTRLVITPRSNRVDVDALMDHLFATCDLERSYRVNLNIIGINGKPGVMNLRQIIK 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           +WL  R +V  RR S+R++ +D+R+ +L GLLIA+LNIDE+I +IR ED+PKP +++RF 
Sbjct: 356 DWLLFRTDVTRRRLSYRLEKVDKRLHLLDGLLIAFLNIDEVIHLIRTEDEPKPALIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q + IL+ +LR L +LEE++I++E D L  EK +++ +L S  +    +  E++  
Sbjct: 416 LSDIQAEYILDTKLRQLARLEEFKIRAEQDELAKEKAELELILGSETRLKTLVKKELKAA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E F        RR+       A  A  ++ ++  EPITVV+S++GWIR  K H +D + 
Sbjct: 476 AEEFGDE-----RRSPLVARGEA-SAFNEKDLLTAEPITVVLSDKGWIRGAKGHDIDPTT 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    A    +   + L  + G+ Y L    L S RG GE     +++      
Sbjct: 530 LSYKSGDKFLSAACGRSNQNVFLQDSVGRFYALGGHTLPSARGQGEPATGRLNVASGALF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     K+L+ +  G  FI +  ++    R GK  + +    K+     V   +  
Sbjct: 590 TDVIMGADDQKVLLGTDAGYGFIGKIGDLYTKNRAGKAVVSLPKGAKILSPKMVNDANAL 649

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWID 713
           +A V    +LL+F I ++PE++RGKG ++ +        ++  + D       + L  + 
Sbjct: 650 IAAVSNEGRLLVFPIAELPELARGKGNKIINIPGSRLQAREEFVIDYGVISEGDSL-VVH 708

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S  R       DL  + G+RG  G  +P+GF +  K 
Sbjct: 709 SGKRYLVMKAKDLEHYSGERGRRGHKLPRGFQKVDKL 745


>gi|302383735|ref|YP_003819558.1| DNA gyrase subunit alpha [Brevundimonas subvibrioides ATCC 15264]
 gi|302194363|gb|ADL01935.1| DNA gyrase, A subunit [Brevundimonas subvibrioides ATCC 15264]
          Length = 933

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 251/843 (29%), Positives = 386/843 (45%), Gaps = 115/843 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +S+   L+  YL YA+S I  RA+PD RDG KPVHRRI+++M ++ +    ++ K 
Sbjct: 30  DIAVISIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERSYSKC 89

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G+ HPHGD SVY +LVR+AQPF     LI GQGNFG++DGD  A+ RYTEAR
Sbjct: 90  ARVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLIDGQGNFGSVDGDMPASMRYTEAR 149

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M   A  +L  +D+D VDF+  Y+E++ EPVV P++ PNLL NG  GIAVGMAT+IP HN
Sbjct: 150 MAPAASALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIPPHN 209

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A +AL+D+PE+S + LL+ + GPDFPTGG I+  R +   + R GRG   VR  
Sbjct: 210 LGEIVDACIALLDDPEVSDDALLDIVPGPDFPTGGEIL-GRTAPRNALRDGRGSVVVRGV 268

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE + +    IVVTE+P+QV K  LIE+IAE++  KR+  + D+RDES      ++  
Sbjct: 269 ASVETIRKDREAIVVTELPFQVNKQTLIERIAEMVREKRLEGISDVRDESDRAGMRIVIE 328

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++  ++  + M++ F +NM  L+    P+ M L  +L+ +L  R EV+ RR
Sbjct: 329 LKRDASGDVILNQLWRYTAMQSSFGVNMLALNH-GRPEQMGLRKLLEVFLDFREEVVVRR 387

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------------- 415
             F +     R  +L GL +A  NIDE+I IIR+   P                      
Sbjct: 388 VKFELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMIALVE 447

Query: 416 ---------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                    +  +   LT+ Q  AIL L L  L  L    I  E   L    +   ++L+
Sbjct: 448 LIADPRSVLIDGNSLKLTDEQARAILGLTLSRLTGLGRDDIFGEARGLADTIQGHLTILS 507

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
             K     I  ++ +V+  F+       RRT   E    D     + +I +E + V +++
Sbjct: 508 DRKNILAIIREDLLDVRNQFAVP-----RRTLIGE---GDFELEDEDLIPREDMVVTVTH 559

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+++                 S +  K+ D++     A T   +L  +T+GKAY L   
Sbjct: 560 GGYVKRVALNAYRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFATNGKAYKLKVW 619

Query: 579 NLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L   +    G+A   L+ +     I+                ++  +  G+    + S+
Sbjct: 620 RLPLGAPTSRGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATRSGDVRRNKLSD 679

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE-MSR-GKGV 687
                R GK  +K+   + M  V   T  D V +     + + F  D +     R   GV
Sbjct: 680 FATVNRAGKIAMKLEDGDHMVGVALCTAEDDVLLTTAGGRAIRFKADDVRVFKGRDSTGV 739

Query: 688 RLQSYK-DGGISDVICF-----------------------------------KICEGLT- 710
           R    + D  +  +                                         EG   
Sbjct: 740 RGVRLQGDDAVISMAVLGRVDATPDERAAYVKHANAMRKATGESDDETTGVEADDEGAEE 799

Query: 711 --------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                                +      + +  +        RGG G        R+GK 
Sbjct: 800 GGDAPISPERIAALGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGKR 859

Query: 751 LSS 753
           L++
Sbjct: 860 LAA 862



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKV--SSEEKMKLVVKVTG-DHVAVV 664
           +   +L V+  G        E     R G   T   +   + +++     V   D + +V
Sbjct: 816 AEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGKRLAAAFPVEESDDLLLV 875

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
             + +++   + Q+  + R  +GV +    +G     +
Sbjct: 876 TSSGQMIRTRVGQVRIVGRSSQGVTIFRTAEGERVVSV 913


>gi|1835202|emb|CAA70294.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 907

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 261/832 (31%), Positives = 404/832 (48%), Gaps = 107/832 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 10  QVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARP 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 130 PAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  V
Sbjct: 190 VVDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARV 248

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES      V+    R
Sbjct: 249 EEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELKR 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++
Sbjct: 309 DATPEVVLNQLWRFTPMQTTFGCNMLALN-GGRPEQLTLRDFLSHFLTFREDVVARRTAY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-----------------------------N 409
            ++    R  IL GL +A  N+DE++A IR                             +
Sbjct: 368 ELRKARERSHILCGLAVAVSNVDEVVATIRSLADPAQARERLMTRRLPSADIADYIRLID 427

Query: 410 EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
           +          ++L+E Q  AIL+LRL SL  +   ++  EL  L A+      +L S +
Sbjct: 428 DPSHTINEDGTYNLSEIQARAILDLRLSSLTAMGVKEVTDELAELAAKIRDYLDILGSRE 487

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK++F+       RRT   E +        + +IE+E + V I++ G+
Sbjct: 488 RIMAIISDELREVKDLFAVP-----RRTEISEWAGD---LEDEDLIEREDMVVTITSGGY 539

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 540 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 599

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S+G+      S+   
Sbjct: 600 LGGRTAKGKAIVNILPIATGISIAALMKIDGPEEEWDRLQVVFATSEGDVRRNRLSDFTN 659

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQ 690
             R GK  +K+     +  V      D V +V    + + FS   +     R   GVR  
Sbjct: 660 VKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGI 719

Query: 691 SYKDGGISDVICFK---------------------------------------------- 704
               G     +                                                 
Sbjct: 720 RLASGDRVVSMSVIRHFEADPAERAAYLKQRRLMAGVTQEAEADEEEDAVEAGQLSPTRY 779

Query: 705 ---ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +    R   +  +     +  RGG G    +   R G+ ++S
Sbjct: 780 AEMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRGGQLVAS 831



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L ++++G   I    +     R G+            ++     V   D V +  
Sbjct: 785 AEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRGGQLVASFPVEMSDQVMLAT 844

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              + +   ++QI   SR   GVR+  +  G   +V+   
Sbjct: 845 SGGQSIRVPVEQISFRSRSAGGVRV--FDTGASEEVVSVA 882


>gi|167625556|ref|YP_001675850.1| DNA topoisomerase IV subunit A [Shewanella halifaxensis HAW-EB4]
 gi|167355578|gb|ABZ78191.1| DNA topoisomerase IV, A subunit [Shewanella halifaxensis HAW-EB4]
          Length = 755

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 268/757 (35%), Positives = 432/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  + +L+E++ GPD+PT   I+     I + Y+
Sbjct: 181 VGMATDVPPHNAKELVGACVELLDNPKADLARLMEFVPGPDYPTEAEIITPAADITKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     +  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYTVE-----NGEIVITALPHQASSGKILEQIASQMQAKKLPMVTDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+++ P++  +D D LM  +F  +D++  + +N+NVL +   PQV  L  +L 
Sbjct: 296 SDHESPVRMIIVPRSNRVDCDQLMAHLFATTDLQKSYRVNLNVLGLNGRPQVKGLLELLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  +R+  I  R+ IL  L+IA+LNIDE+I IIR  D PK  ++SRF+
Sbjct: 356 EWLTFRMTTVKRRLEYRLDKILARLHILDALMIAFLNIDEVIEIIRYNDDPKAELISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAIL+L+LR L KLEE++IK E   L AE++K+  LL+S ++    I  E+ + 
Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKGEQSELEAERDKLQLLLSSERRMKTLIKKELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E + +   T Q+  +  E +TVV+S +GW+R  K H VD  +
Sbjct: 476 GEDYGDE-----RRSPLVERTESKALTQQEL-VAVESVTVVLSEKGWVRCAKGHEVDGQS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS   +    +    + + T G+A+      L S R  GE I    +L     +
Sbjct: 530 LSYKAGDSFLRSAQGRSNQPSVFIDTSGRAFATDTHTLPSARSQGEPITTRFNLAPGTTM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     L+ S  G  FI    ++++  + GK  L + +  K+ L  KV      
Sbjct: 590 EHLLLSDDEQCYLLASDAGYGFICANKDMVSRNKAGKALLSLPANAKVLLPQKVDKSKPQ 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            +  +    ++L+FS+D +P++S+GKG ++             +   +     +    + 
Sbjct: 650 SILAITNEGRMLLFSLDALPQLSKGKGNKIIGIPGERAKNREELLLHLNVIPEDTAVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|53805051|ref|YP_113320.1| DNA topoisomerase IV subunit A [Methylococcus capsulatus str. Bath]
 gi|53758812|gb|AAU93103.1| DNA topoisomerase IV, A subunit [Methylococcus capsulatus str.
           Bath]
          Length = 744

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 290/747 (38%), Positives = 439/747 (58%), Gaps = 23/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N + + LR   E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   +  KKS
Sbjct: 6   NYERIPLRDFTEKAYLDYAMYVILDRALPHIADGLKPVQRRIVYAMSELGLSAQSKPKKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA
Sbjct: 66  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGSPDDPKSFAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T  A+ +L  +D   VD+   ++    EP + P++ PNLL NG +GIAVGMAT IP H
Sbjct: 126 RLTPYAQSLLSELDLGTVDWVPNFDGTLEEPQLLPARLPNLLLNGATGIAVGMATDIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ EA + LID PE ++E+L   I GPDFP    ++  RE +++ Y+ G G  R+RA
Sbjct: 186 NLREVVEACILLIDRPEATVEELCGCIRGPDFPNEAELITPREELLKLYQTGSGAVRLRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIV 312
           R+ +E+       IVVT +PYQV  ++L+E+IA  + AK++PL+ED+RDES  +   R+V
Sbjct: 246 RYELEDGN-----IVVTALPYQVSGAKLMEQIAAQMQAKKLPLVEDLRDESDHENPTRLV 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           + PK+R ++ + LM  +F  +D+E  + +N+N++ +   PQV  L  IL EWL+ R E +
Sbjct: 301 IMPKSRRVEVEPLMSHLFATTDLERSYRVNLNIIGLNGRPQVKNLREILTEWLSFRTETV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR   R+  +  R+ IL+GLL+A+L+IDE+IAIIR ED+PKPV+++RF LT+ Q +AIL
Sbjct: 361 RRRLQHRLDKVLARLHILEGLLLAFLDIDEVIAIIRGEDEPKPVLMTRFGLTDLQAEAIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            LRLR L +LEE +I+ E + L  E+ +++  L S  +    I  E+R+  E F  +   
Sbjct: 421 ELRLRHLARLEEIKIRGEQEALEQERARLERTLGSRAELDALIKQELRQDAEKFGDA--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RR+      +A +A    A+I  EP+TVV+S +GWIRS K H VD + L ++ GD   
Sbjct: 478 --RRSPIV-ARQASQALDTTALIASEPVTVVLSEKGWIRSAKGHEVDPATLSYRAGDGFL 534

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            A    +T     L + G++Y+L   +L S RG GE +   ++       V         
Sbjct: 535 CAALGRSTQPAYFLDSTGRSYSLAVHDLPSARGQGEPLTGRLNPPPGAIFVAVLAGSEED 594

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENRK 669
             L+ +  G  F+V+  E+ +  R GKT L V    K+   ++V    GD +A V    +
Sbjct: 595 WYLLATDGGYGFLVQLGELGSKNRSGKTLLTVPDHAKVMPPLRVANPDGDRLAFVSAQGR 654

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGIS------DVICFKICEGLTWIDSAGRSYNRSE 723
           LL++  ++IP +++GKG +L       +         +            +  R+     
Sbjct: 655 LLVYPAEEIPRLNKGKGSKLIQIPPADLEARQDYLVAMAALPAGAALRATAGKRTLTLQP 714

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DL  + G RG  G+ +P+GF R  + 
Sbjct: 715 ADLDHYRGSRGRRGNPLPRGFQRVERL 741


>gi|307249786|ref|ZP_07531764.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858201|gb|EFM90279.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 748

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 265/746 (35%), Positives = 442/746 (59%), Gaps = 23/746 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAY 129
            +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAM 123

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT
Sbjct: 124 RYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMAT 183

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G 
Sbjct: 184 DIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGS 243

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++RA W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  + 
Sbjct: 244 IKMRAVWKKEDGE-----IVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHEN 298

Query: 310 --RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
             RIV+ P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  
Sbjct: 299 PIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLTF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR  + RR ++R+  I  R+ IL+GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q
Sbjct: 359 RRTTVTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AILNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+
Sbjct: 419 SEAILNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFA 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ 
Sbjct: 479 SP-----RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRA 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD      H  +   ++ L + G+AY L   +L S R  GE +   I L     +    +
Sbjct: 533 GDGYLAHAHGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQVLM 592

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVV 664
            +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  D    +  +
Sbjct: 593 ANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIENDAELSLVAM 652

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWIDSAG-RS 718
               ++L+F I ++P++S+GKG ++ +      K+G         +    + +  +G R 
Sbjct: 653 SSVGRMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFVSGKRK 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                +D+  + G+R   GS + +G 
Sbjct: 713 ITLKPSDIDNYRGERARKGSQLVRGL 738


>gi|294790229|ref|ZP_06755387.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
 gi|294458126|gb|EFG26479.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
          Length = 898

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 226/784 (28%), Positives = 368/784 (46%), Gaps = 40/784 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +   L    +K++ L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G 
Sbjct: 11  EDFGLLKGTRIKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGY 70

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K +R+VG+V+GK HPHGD ++YD+LVR+AQP+  RY L+ GQGNFG+   D A
Sbjct: 71  RPDRGYNKCSRVVGDVMGKYHPHGDAAIYDTLVRMAQPWSMRYLLVDGQGNFGSPGDDPA 130

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V PS+FPNLL NG++GIAVG
Sbjct: 131 AAMRYTECRMAPLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVG 190

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVES 242
           MAT+IPSHN++EI E     +++PE S E+LL      I GPDFPTG  I+   + I ++
Sbjct: 191 MATNIPSHNMREIAEGVHWALNHPEASREELLNNLIAIIKGPDFPTGATIL-GHKGIEQA 249

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  + D+R
Sbjct: 250 YRTGRGLITMRAVVNTEEIN-GRLCLVVTELPYQVNPDRLASSIKEAVRDGKIQGIADMR 308

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  + ++  F  NM  L    VP+ + LD  +
Sbjct: 309 DETSGRTGQRLVLVLKRDAVPKVVLNNLYKHTQLQQTFGANMLALVD-GVPRTLSLDAFI 367

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + W+ H+ +V+ RR+ +  +  + R  IL+G L A   I+E+IA+IR     +       
Sbjct: 368 RHWINHQLQVVERRTRYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVEQARNGLM 427

Query: 422 ---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + + Q DAIL ++LR L  LE  +I  E + LL   E  + +L    +Q   +  E
Sbjct: 428 DLLDVDQIQADAILAMQLRRLAALERQKIIDEHEELLRRIEDYNDILAKPDRQRKIVGDE 487

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+ + +           +         A     +       +  +     R+      
Sbjct: 488 MDEIVDKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGYIKRTKADEYRAQHRGGK 547

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y +    +  G    +   +  L+ L
Sbjct: 548 GIKGTRLREDDVVDHFFLTSTHNWLLFFTNQGRVYRIKGYEVPEGSRDSKGQHVANLLQL 607

Query: 597 NHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--------- 644
             ++ I              L++ +  G        E  +  + G   +++         
Sbjct: 608 GPDEKIQQVLSIKDYQTASYLVLATRSGKIKKTRLDEYDSARQGGLIAVRLREIEGAFRT 667

Query: 645 -SSE------EKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYK 693
                     +++        D  + VV +    + FS D   +  M R   GV+   ++
Sbjct: 668 DKEGNQVPLVDELIGAALCNDDDEIIVVSQKGMSVKFSADDQTLRPMGRQTAGVQAMKFR 727

Query: 694 ----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               D  +  +           +      + +        L  R G G          G 
Sbjct: 728 GKPGDDLLLSMDVVPQGTDSDLLVVTNEGFAKRTALSEYRLQGRNGYGVKAINLVEGRGN 787

Query: 750 FLSS 753
            + +
Sbjct: 788 LIGA 791


>gi|32475579|ref|NP_868573.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
 gi|32446121|emb|CAD75950.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
          Length = 1003

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 238/807 (29%), Positives = 348/807 (43%), Gaps = 73/807 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   L E YL YA+S I  RA+PD+RDG KP  RRI+ AM+++ L  G+   K 
Sbjct: 105 RMVDLPIEDELRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKC 164

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+I G+  G  HPHG+  +Y +LVR+AQ +  R  LI  QGNFG++ G   AA RYTEAR
Sbjct: 165 AKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEAR 224

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  VA  +L  +  D VD+  TY+E  +EP V PSKFPNLL NG+ GIAVGMATSIP HN
Sbjct: 225 MGAVAAAMLDDLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHN 284

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+A + LI+ P+ SI++L E I GPDFPTGG I+  R  +   Y+ GR    VRAR
Sbjct: 285 PTEVCDALIKLIEEPDTSIDELCEIIPGPDFPTGG-IICGRAGVRRGYKTGRSTMVVRAR 343

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-RIVLF 314
             +EE+      IVVTEIPYQ  + R+IEKIA L+   RI  +  IRDES       ++ 
Sbjct: 344 CQIEEMKGNRHRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVV 403

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  DPD+++  ++  S ++  F L    L     P+ + L  +L E+L HR  V+ R
Sbjct: 404 ELKRGEDPDVILNQLYQFSPLQDTFSLIFLALVD-GKPRELTLKEMLAEFLRHRVTVIRR 462

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL----------- 423
           R+ F +    RR   ++GLL+A  NIDEII  IR              +           
Sbjct: 463 RTQFLLARARRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRAL 522

Query: 424 --------------------TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                               T  Q D IL +RL  L  LE+ ++  E   LL E      
Sbjct: 523 GDEGFKQFQLERGEADSYTLTSVQTDEILRMRLGQLVNLEQEKLSGEHAELLKEIIDYID 582

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITV 522
           +L S  +    I  ++ E+K  F               +   D  T +  ++       +
Sbjct: 583 ILGSPSRINGIIKEDLEEMKRRFGDKRRTEISHEELGNIDLEDLITEETMVVSISHRGYI 642

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
             +      + +     +        D ++    A T   +L  +T GK       ++  
Sbjct: 643 KRTPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRWQKVYDIPQ 702

Query: 583 GRGHGE--AIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTR 636
                +  AI  L+ +   + I               +++ +  G        +     R
Sbjct: 703 LARDAKGRAIVNLLQMEEGEQIAECLAVRDFNQPGHTIVMTTKSGLVKKTPLEQYSRPKR 762

Query: 637 KGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            G   +K+   +++     V  GD + +V  +   + F       M R   GV+  S   
Sbjct: 763 GGIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSRPMGRNTSGVKGISLVG 822

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSEN--------------------DLL------- 727
                 +     E  T +      Y +                       D         
Sbjct: 823 DDAVVGMVVTDPE-ATLLTVCKNGYGKRTPFGPNLADVSETDADESSEGGDDEAATASGS 881

Query: 728 --GWLGKRGGVGSLVPKGFPRSGKFLS 752
                 KRGG G    K   R+GK + 
Sbjct: 882 ARYRTQKRGGKGLRDIKTSKRNGKVIG 908



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 64/215 (29%), Gaps = 37/215 (17%)

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V  +        K     + A+  +EGD L  A      D I+++++DG A      +  
Sbjct: 749 VKKTPLEQYSRPKRG--GIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSR 806

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE----------- 630
                  +    I L  +  +V   V D    LL V   G                    
Sbjct: 807 PMG-RNTSGVKGISLVGDDAVVGMVVTDPEATLLTVCKNGYGKRTPFGPNLADVSETDAD 865

Query: 631 ------------------IIANTRKGKTFLKVSS---EEKMKLVVKVTGDH-VAVVGENR 668
                                  R GK    + +     K+  + +V  D  + ++    
Sbjct: 866 ESSEGGDDEAATASGSARYRTQKRGGKGLRDIKTSKRNGKVIGIARVNDDDELFLMTAKG 925

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           KL   S   I  + R  +GVR+ +  +G     + 
Sbjct: 926 KLQRISAGDINVIGRNTQGVRIMNVDEGDELIAVV 960


>gi|309973202|gb|ADO96403.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae R2846]
          Length = 747

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 274/749 (36%), Positives = 434/749 (57%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLD 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 ASP-----RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDSYLAHACGKSNQAVVFIDSTGRSYALDPISLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 651 TSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRTERGRKGSTLPRGLHTN 739


>gi|111115262|ref|YP_709880.1| DNA gyrase, subunit A [Borrelia afzelii PKo]
 gi|110890536|gb|ABH01704.1| DNA gyrase, subunit A [Borrelia afzelii PKo]
          Length = 810

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 255/760 (33%), Positives = 422/760 (55%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AF
Sbjct: 6   NKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYT
Sbjct: 66  KKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++AE I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++ 
Sbjct: 126 EAKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMA 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + +++V++Y+ G+G   +
Sbjct: 186 PHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLVKAYKTGKGSVVI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   +
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP ++M  ++  ++ +  F +N   L    +P+ + L+ +L E++ HR+ ++
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVD-GIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++       K  +V+ F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVANFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           ++L+++L+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E   +   F   
Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPVRIINIIREETINLGLKFGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    +++KE I V+++ +G+++ L  +           LS
Sbjct: 484 -----RRTKII-YDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHN 599
           +    +GD + IAL  ++ D + ++S +GK Y + A  +       +   +   I+L   
Sbjct: 538 SFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQ 597

Query: 600 QDIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+T      +     LL+ ++ G     E ++      +G   +K++ ++ +     V
Sbjct: 598 EEILTIKNSKDFTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIV 657

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             D  V  + +     IF+   +   +RG +GV     K+G +  V    + E    +  
Sbjct: 658 FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLAVRENPYLLII 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
           +   Y +  +       KRG  G    K   +  G  + +
Sbjct: 717 SENGYGKRLSVSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 60/184 (32%), Gaps = 7/184 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                      S  +  +   + D +  A      ++++ LS  G A+   + ++     
Sbjct: 626 RFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNR 685

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
             + +  +  L      V          LL++S  G    +  S+I    R    +    
Sbjct: 686 GTQGVCGM-KLKEGDLFVKVLAVRENPYLLIISENGYGKRLSVSKISELKRGATGYTSYK 744

Query: 646 SEEK-----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             +K     +  +     D + +V +  K L     ++ E  +  +G+++    +  +  
Sbjct: 745 KSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLIS 804

Query: 700 VICF 703
           V  F
Sbjct: 805 VSKF 808


>gi|216263471|ref|ZP_03435466.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1]
 gi|215980315|gb|EEC21136.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1]
          Length = 810

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 255/760 (33%), Positives = 422/760 (55%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AF
Sbjct: 6   NKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYT
Sbjct: 66  KKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++AE I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++ 
Sbjct: 126 EAKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMA 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + +++V++Y+ G+G   +
Sbjct: 186 PHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLVKAYKTGKGSVII 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   +
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP ++M  ++  ++ +  F +N   L    +P+ + L+ +L E++ HR+ ++
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVD-GIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++       K  +V+ F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVANFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           ++L+++L+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E   +   F   
Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPVRIINIIREETINLGLKFGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    +++KE I V+++ +G+++ L  +           LS
Sbjct: 484 -----RRTKII-YDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHN 599
           +    +GD + IAL  ++ D + ++S +GK Y + A  +       +   +   I+L   
Sbjct: 538 SFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQ 597

Query: 600 QDIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+T      +     LL+ ++ G     E ++      +G   +K++ ++ +     V
Sbjct: 598 EEILTIKNSKDFTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIV 657

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             D  V  + +     IF+   +   +RG +GV     K+G +  V    + E    +  
Sbjct: 658 FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLAVRENPYLLII 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
           +   Y +  +       KRG  G    K   +  G  + +
Sbjct: 717 SENGYGKRLSVSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 60/184 (32%), Gaps = 7/184 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                      S  +  +   + D +  A      ++++ LS  G A+   + ++     
Sbjct: 626 RFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNR 685

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
             + +  +  L      V          LL++S  G    +  S+I    R    +    
Sbjct: 686 GTQGVCGM-KLKEGDLFVKVLAVRENPYLLIISENGYGKRLSVSKISELKRGATGYTSYK 744

Query: 646 SEEK-----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             +K     +  +     D + +V +  K L     ++ E  +  +G+++    +  +  
Sbjct: 745 KSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLIS 804

Query: 700 VICF 703
           V  F
Sbjct: 805 VSKF 808


>gi|327542890|gb|EGF29346.1| DNA gyrase subunit A [Rhodopirellula baltica WH47]
          Length = 979

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 238/807 (29%), Positives = 348/807 (43%), Gaps = 73/807 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   L E YL YA+S I  RA+PD+RDG KP  RRI+ AM+++ L  G+   K 
Sbjct: 81  RMVDLPIEDELRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKC 140

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+I G+  G  HPHG+  +Y +LVR+AQ +  R  LI  QGNFG++ G   AA RYTEAR
Sbjct: 141 AKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEAR 200

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  VA  +L  +  D VD+  TY+E  +EP V PSKFPNLL NG+ GIAVGMATSIP HN
Sbjct: 201 MGAVAAAMLDDLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHN 260

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+A + LI+ P+ SI++L E I GPDFPTGG I+  R  +   Y+ GR    VRAR
Sbjct: 261 PTEVCDALIKLIEEPDTSIDELCEIIPGPDFPTGG-IICGRAGVRRGYKTGRSTMVVRAR 319

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-RIVLF 314
             +EE+      IVVTEIPYQ  + R+IEKIA L+   RI  +  IRDES       ++ 
Sbjct: 320 CQIEEMKGNRHRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVV 379

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  DPD+++  ++  S ++  F L    L     P+ + L  +L E+L HR  V+ R
Sbjct: 380 ELKRGEDPDVILNQLYQFSPLQDTFSLIFLALVD-GKPRELTLKEMLAEFLRHRVTVIRR 438

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL----------- 423
           R+ F +    RR   ++GLL+A  NIDEII  IR              +           
Sbjct: 439 RTQFLLARARRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRAL 498

Query: 424 --------------------TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                               T  Q D IL +RL  L  LE+ ++  E   LL E      
Sbjct: 499 GDEGFKQFQLERGEADSYTLTSVQTDEILRMRLGQLVNLEQEKLSGEHAELLKEIIDYID 558

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITV 522
           +L S  +    I  ++ E+K  F               +   D  T +  ++       +
Sbjct: 559 ILGSPSRINGIIKEDLEEMKRRFGDKRRTEISHEELGNIDLEDLITEETMVVSISHRGYI 618

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
             +      + +     +        D ++    A T   +L  +T GK       ++  
Sbjct: 619 KRTPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRWQKVYDIPQ 678

Query: 583 GRGHGE--AIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTR 636
                +  AI  L+ +   + I               +++ +  G        +     R
Sbjct: 679 LARDAKGRAIVNLLQMEEGEQIAECLAVRDFNQPGHTIVMTTKSGLVKKTPLEQYSRPKR 738

Query: 637 KGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            G   +K+   +++     V  GD + +V  +   + F       M R   GV+  S   
Sbjct: 739 GGIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSRPMGRNTSGVKGISLVG 798

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSEN--------------------DLL------- 727
                 +     E  T +      Y +                       D         
Sbjct: 799 DDAVVGMVVTDPE-ATLLTVCKNGYGKRTPFGPNLADVSETDADESSEGGDDEAATASGS 857

Query: 728 --GWLGKRGGVGSLVPKGFPRSGKFLS 752
                 KRGG G    K   R+GK + 
Sbjct: 858 ARYRTQKRGGKGLRDIKTSKRNGKVIG 884



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 64/215 (29%), Gaps = 37/215 (17%)

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V  +        K     + A+  +EGD L  A      D I+++++DG A      +  
Sbjct: 725 VKKTPLEQYSRPKRG--GIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSR 782

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE----------- 630
                  +    I L  +  +V   V D    LL V   G                    
Sbjct: 783 PMG-RNTSGVKGISLVGDDAVVGMVVTDPEATLLTVCKNGYGKRTPFGPNLADVSETDAD 841

Query: 631 ------------------IIANTRKGKTFLKVSS---EEKMKLVVKVTGDH-VAVVGENR 668
                                  R GK    + +     K+  + +V  D  + ++    
Sbjct: 842 ESSEGGDDEAATASGSARYRTQKRGGKGLRDIKTSKRNGKVIGIARVNDDDELFLMTAKG 901

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           KL   S   I  + R  +GVR+ +  +G     + 
Sbjct: 902 KLQRISAGDINVIGRNTQGVRIMNVDEGDELIAVV 936


>gi|229844203|ref|ZP_04464344.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 6P18H1]
 gi|229847153|ref|ZP_04467258.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 7P49H1]
 gi|229809982|gb|EEP45703.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 7P49H1]
 gi|229813197|gb|EEP48885.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 6P18H1]
          Length = 747

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 274/749 (36%), Positives = 434/749 (57%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLD 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 ASP-----RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDSYLAHACGKSNQAVVFIDSTGRSYALDPISLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 651 TSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRTERGRKGSTLPRGLHTN 739


>gi|15602234|ref|NP_245306.1| DNA topoisomerase IV subunit A [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720615|gb|AAK02453.1| ParC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 750

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 273/746 (36%), Positives = 434/746 (58%), Gaps = 22/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N +  E ++   LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   NIINYEGIEQTPLREFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAA 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+ ++A+++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLAKIADILLSELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ EAA+ LIDNP+ S++ LL  + GPD+PT   I+ S+E I + Y  GRG
Sbjct: 182 TDIPPHNINELAEAAVMLIDNPKASLDDLLTVVQGPDYPTEAEIISSKEDIRKLYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       I++T +P+Q   S++I +IAE + AK++P++EDIRDE+  +
Sbjct: 242 SVRMRAVWKKEDGE-----IIITALPHQASPSKVIAQIAEQMSAKKLPMVEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLIPRSNRVDVDALMAHLFATTDLEKSYRVNMNMIGLDNRPAVKNLVQILTEWLQ 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GLLIAYLNIDE+I +IR+ED+PK  ++ RF L+E 
Sbjct: 357 FRRTTVTRRLQYRLNKVLDRLHILQGLLIAYLNIDEVIHVIRHEDEPKAALIDRFGLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILNLRLR L KLEE ++++E D L  E++ +  +L S ++    I  EI++  + +
Sbjct: 417 QAEAILNLRLRHLAKLEENELQAEKDRLEEERDSLQLILGSERRLNTLIKKEIQQDAQTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +        R +        KA  +  M   EP+TV++S  GW+R  K H +D+  L +K
Sbjct: 477 ASP------RLSPLVQRAEAKAISESDMTPAEPVTVILSEMGWVRCAKGHDIDVQNLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD      +  +    + + + G++Y L   +L S R  GE +   + L     +    
Sbjct: 531 AGDKYLSHAYGKSNQAAVFIDSTGRSYALDPLSLPSARSQGEPLTGKLSLPAGASVEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +      LL+ S  G  FI +  ++IA  + GK  + +    K+   +++  ++  +  +
Sbjct: 591 MEQDKQALLMASDAGYGFICQFDDLIARNKAGKALISLPENAKVLTPLRIDNENARLVAL 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DSAGRS 718
               ++LIF +  +P +++GKG ++ +      K      V  F I E  + +  +  R 
Sbjct: 651 TSAGRMLIFPVKDLPSLAKGKGNKIVTIPAAHAKARTELLVRLFLINEQTSLVFHAGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                 D   +  +RG  G+ +P+G 
Sbjct: 711 ITLKPEDWQKFSAERGRKGTQLPRGL 736


>gi|146277213|ref|YP_001167372.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17025]
 gi|145555454|gb|ABP70067.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17025]
          Length = 904

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/837 (30%), Positives = 402/837 (48%), Gaps = 107/837 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
               +  VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      +
Sbjct: 4   PHGGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSAR VG+ +GK HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  RKSARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM + A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP
Sbjct: 124 EVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +
Sbjct: 184 PHNLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  VEE+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES      V
Sbjct: 243 RAKVRVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++  ++  + M+T F  NM  L+ G  P+ + L   L  +L  R +V+
Sbjct: 303 VIELKRDATPEVVLNQLWRFTPMQTTFGCNMLALN-GGRPEQLTLRDFLSHFLTFREDVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------- 415
            RR+++ ++    R  IL GL +A  N+DE++A IR+   P                   
Sbjct: 362 ARRTAYELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIAD 421

Query: 416 ------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                            ++L+E Q  AIL+LRL+ L  +   ++  EL  L A+      
Sbjct: 422 YIRLIDDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLD 481

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S ++    I+ E+REVK +F+       RRT   E +        + +IE+E + V 
Sbjct: 482 ILGSRERIMAIISDELREVKALFAVP-----RRTEISEWAGD---LEDEDLIEREDMVVT 533

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I++ G+I+          +     L+++  KE D +     A+T  ++L  +TDG  Y L
Sbjct: 534 ITSGGYIKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDL 593

Query: 576 PAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVE 627
               L        G+AI  ++ +     I      D         +++  +S+G+     
Sbjct: 594 KCWRLPLGGRTAKGKAIVNILPIATGISIAALMKIDEPEAEWDRLQVVFATSEGDVRRNR 653

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SR-G 684
            S+     R GK  +K+     +  V      D V +V    + + F    +     R  
Sbjct: 654 LSDFTNVKRNGKIAMKLPEGVSLVNVSICDENDDVMMVTAMGRAIRFQTTDVRVFSGRDS 713

Query: 685 KGVRLQSYKDGGISDVICFK---------------------------------------- 704
            GVR     +G     +                                           
Sbjct: 714 TGVRGIRLAEGDRVVSMSVIRHFEADPAERAAYLKQRRLMAGVTEEAESDEDEDAIEAGQ 773

Query: 705 ---------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                           +    R   +  +     +  RGG G    +   R G  ++
Sbjct: 774 LSPTRYAEMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTSFEKSMRGGPLVA 830



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L ++++G   I    +     R G+             +     +   D V +  
Sbjct: 785 AEDLILTITARGLGKISSSHDYPVRGRGGQGVTSFEKSMRGGPLVACFPIEMSDQVMLAT 844

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              + +   ++QI   SR   GVR+  +  GG  +V+   
Sbjct: 845 SGGQSIRVPVEQISFRSRSAGGVRV--FDTGGNEEVVSVA 882


>gi|119475094|ref|ZP_01615447.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2143]
 gi|119451297|gb|EAW32530.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2143]
          Length = 753

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 277/760 (36%), Positives = 444/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +  + V+ VSL+   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+G
Sbjct: 1   MSDQFHIAADGVEQVSLKHYTEKAYLDYSMYVILDRALPNISDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L  GA +KKSAR VG+VIGK HPHGD SVY+++V +AQ F  RYPL+ GQGN+G + D  
Sbjct: 61  LKAGAKYKKSARTVGDVIGKYHPHGDSSVYEAMVLMAQNFSYRYPLVDGQGNWGASDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++   ++L+L  + +  V ++  ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTESKLAAFSDLLLAELGQGTVAWQANFDGTMDEPKVLPARVPNVLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  A + L++ P  +I++L E+I GPD+PT   I+   + +   Y+
Sbjct: 181 VGMATDIPPHNLREVVSACIRLLEEPTTTIDQLCEHIQGPDYPTDAEIITPIDDMRNMYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA W  E        +VVT +P+QV  S+++E+IA+ I AK++P++ D+RDE
Sbjct: 241 TGKGSIRMRAVWQKE-----GSDVVVTALPHQVSGSKILEQIAQQIHAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ PK+  +D + +M  +F  +D+E  + +N+N++ +   P+V  LD IL 
Sbjct: 296 SDHENPTRLVIIPKSNRVDIEPMMNHLFASTDLERTYRVNLNMIGIDGGPEVKSLDKILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR   R+Q ++ R+  L  L+I YLN+DE+I IIR E+ PKPV++ RF 
Sbjct: 356 EWLQFRSDTVRRRLQHRLQKVEERLMRLAALMIVYLNVDEVIRIIREEEYPKPVLIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q + I+  +LR L +LEE +I+SE ++L  EKE ++ +L S ++    +  E+ EV
Sbjct: 416 LVEMQAEYIMETKLRQLARLEEVKIRSEEEDLEKEKENLEQILASARRLKTLVKKELLEV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+       A   T ++ M   EP+TVV+S +GW+RS K H +D  +
Sbjct: 476 AEEYGD-----DRRSPIASRGEAKAFTEEELMT-TEPVTVVLSEKGWVRSAKGHDIDPQS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS  +A    +   +++L + GKAYT+ A +L S RG GE +   I+       
Sbjct: 530 LSYKSGDSFHLAAKGKSNQSVVILDSTGKAYTVAAHSLPSARGQGEPLTGRINSPSGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +  +    L+ S  G  F+V+ S++    + GK  L +    ++     V G    
Sbjct: 590 EGLMMGRADDLYLLASDAGYGFVVKFSDLQTKNKAGKAALSLPKGARVLQPGMVAGTETE 649

Query: 661 ---VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLT 710
              VA V    ++LIF + ++P MSRGKG ++          ++  +  V      + L 
Sbjct: 650 LRYVAAVSNEGRMLIFPLTELPTMSRGKGNKIIGIPPSRLQAREEFVVAVAIINERDTLR 709

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +  R  N   ++L  ++G+RG  G  +P+GF +    
Sbjct: 710 V-HAGKRYVNMKFSELDHYMGERGRRGHKLPRGFQKVDMV 748


>gi|219685127|ref|ZP_03539947.1| DNA gyrase, A subunit [Borrelia garinii Far04]
 gi|219673223|gb|EED30242.1| DNA gyrase, A subunit [Borrelia garinii Far04]
          Length = 810

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/760 (33%), Positives = 422/760 (55%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AF
Sbjct: 6   NKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYT
Sbjct: 66  KKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++ 
Sbjct: 126 EAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMA 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +
Sbjct: 186 PHNLREICDAIVYMLDNDNASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+ +EE       I+VTEIPY V KS L+ K+A L+  +++  L DIRDES  +   +
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLVKEEKLEGLLDIRDESDREGIRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP ++M  ++  ++ +  F +N   L    +P+ + L+ +L E++ HR+ ++
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVD-GIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR  F ++    +  IL+GL IA  NIDE+I II++       +  +V+ F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLVANFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           ++L+++L+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E   +   F   
Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPARIINIIREETINLGLKFGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    +++KE I V+++ +G+++ L  +           LS
Sbjct: 484 -----RRTKII-YDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHN 599
           +    +GD + IAL  +T D + ++S +GK Y + A  +       +   +   I+L   
Sbjct: 538 SFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQ 597

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+T      +     LL+ ++ G     E ++      +G   +K++ ++ +     V
Sbjct: 598 EEILTIKNSKEFTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIV 657

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             D  V  + +     IF+   +   +RG +GV     K+G +  V    I E    +  
Sbjct: 658 LKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLAIRENPYLLII 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
           +   Y +  +       KRG  G    K   +  G  + +
Sbjct: 717 SENGYGKRLSISKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 60/184 (32%), Gaps = 7/184 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                      S  +  +   + D +  A      ++++ LS  G A+   + ++     
Sbjct: 626 RFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVLKDEKVICLSKKGSAFIFNSRDVRLTNR 685

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
             + +  +  L      V          LL++S  G    +  S+I    R    +    
Sbjct: 686 GTQGVCGM-KLKEGDLFVKVLAIRENPYLLIISENGYGKRLSISKISELKRGATGYTSYK 744

Query: 646 SEEK-----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             +K     +  +     D + +V +  K L     ++ E  +  +G+++    +  +  
Sbjct: 745 KSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVS 804

Query: 700 VICF 703
           V  F
Sbjct: 805 VSKF 808


>gi|307129113|ref|YP_003881129.1| Topoisomerase IV subunit A [Dickeya dadantii 3937]
 gi|306526642|gb|ADM96572.1| Topoisomerase IV subunit A [Dickeya dadantii 3937]
          Length = 758

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 285/756 (37%), Positives = 452/756 (59%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---MTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LSASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  AA+ALID P+  ++ LL Y+ GPDFPT   I+  R+ I + Y 
Sbjct: 178 VGMATDIPPHNVREVAAAAVALIDEPDTQLDALLRYVQGPDFPTEAEIITPRDEIRKMYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+       +V+T +P+QV  +R++E+IA  + AK++P+++D+RDE
Sbjct: 238 SGRGSVRMRAVWKKEDGS-----VVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+VL P++  +D DL+M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVLVPRSNRIDLDLVMNHLFATTDLEKSYRINMNMIGLDGRPSVKGLREILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA RR+ + RR +FR+  + +R+ IL+GLLIA+LNIDE+I IIRNED+PKPV++++F 
Sbjct: 353 EWLAFRRDTVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPVLMAKFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +I+ E D+L  E+++I +LL S ++  + +  EI+E 
Sbjct: 413 LSDTQAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQIQALLASERKMNSLLKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E   A KA  +  +   EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AKAYGDE-----RRSPLHERGEA-KAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+ + A    +   ++ + + G++Y L    L S RG GE +   + L     I
Sbjct: 527 LSYKAGDAYRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660
               +     +LL+ S  G  FI   ++++A  R GK  L +     +   +++    D 
Sbjct: 587 EQVLMAADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLPDNAHVLPPLELQRDDDL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQS-----YKDGGISDVICFKICEGLTW-IDS 714
           +  V    ++L+F +  +PE+S+GKG ++ S        G    +    I    +  + +
Sbjct: 647 LLTVTAAGRMLLFPVADLPELSKGKGNKIVSIPAAQLASGDDRILWLLAIAPHSSVTLYA 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R Y+    +L  +   RG  G+ +P+G  R  + 
Sbjct: 707 GKRKYSLRPEELQKYQASRGCKGTALPRGLQRVDRI 742


>gi|86138320|ref|ZP_01056894.1| DNA gyrase subunit A [Roseobacter sp. MED193]
 gi|85824845|gb|EAQ45046.1| DNA gyrase subunit A [Roseobacter sp. MED193]
          Length = 915

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/836 (30%), Positives = 403/836 (48%), Gaps = 116/836 (13%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     +++KSAR V
Sbjct: 26  VSIEAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKSYRKSARPV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM + 
Sbjct: 86  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 146 AAFMLNDIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L++Y+ GPDFPTG I++  R    ++Y  GRG   +R++  VE
Sbjct: 206 IDATLALIEDPDLTSEQLIDYVPGPDFPTGAIML-GRSGARKAYLEGRGSVIIRSKTRVE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IVV E+PYQV K+ +IEKIAE +  K+I  +  ++DES  +   V+    R 
Sbjct: 265 EIRKDRYAIVVDEVPYQVNKAAMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELKRD 324

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  +F  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++ 
Sbjct: 325 ATPEVVLNQLFRFTPMQTYFGCNMLALN-GGRPEQLTLRRFLTSFIDFREDVVARRTAYL 383

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------------------------- 412
           ++    R  IL GL +A  NIDEI+A IR                               
Sbjct: 384 LRKARERSHILCGLAVAVTNIDEIVATIRQSADAAEAREKLMTRRWPAQPILQYIALIDD 443

Query: 413 --PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L+S ++
Sbjct: 444 PTHTANEDGTYNLSETQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRER 503

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E+REV++ F+       RRT   + S        + +IE+E + V +++ G+I
Sbjct: 504 IMGIICDELREVRDQFAVP-----RRTEIVDWSGDMD---DEDLIEREDMVVTVTSGGYI 555

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--L 580
           +          K     +S +  KE D +     A+T  ++L  +TDG  Y L       
Sbjct: 556 KRTPLVDFRAQKRGGKGISGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 615

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
            S  G G+AI  ++ +     I      D      +  +++  +S G       S+    
Sbjct: 616 SSRTGKGKAIVNILPIPVGVSIAAIMPVDRPDDEWADLQIVFATSAGTVRRNRLSDFTNV 675

Query: 635 TRKGKTFLKVSSEE---KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVR 688
              GK  +K   +    K+         D V +V    + + F    +    SR   GVR
Sbjct: 676 KSNGKIAMKFEEDHADTKLINARICSEDDDVMLVTSTGRAIRFPTTDVRVFNSRNSVGVR 735

Query: 689 LQSYKDGGISDVICFK-------------------------------------------- 704
                +G     +                                               
Sbjct: 736 GIKLSEGAEVVSMSVIRHFDAEPWERSAFIKRFRSELGSDVSEDDAVAEVAEEIEEGALS 795

Query: 705 -------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  +      +           +     +  RGG G    KG    G+ +++
Sbjct: 796 EERYQEMLAANDLLVTINKPGAGNLTSAHDYRVSGRGGQGVGAMKG----GEIVAT 847



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 68/250 (27%), Gaps = 14/250 (5%)

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +   +IA +  E     + +  +  R  +  +      +T +        + V  S    
Sbjct: 676 KSNGKIAMKFEED---HADTKLINARICSEDDDVMLVTSTGRAIRFPTTDVRVFNSRNSV 732

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S     +               +       S  G   +    +        E 
Sbjct: 733 GVRGIKLSEGAEVVSMSVIRHFDAEPWERSAFIKRFRSELGSDVS---EDDAVAEVAEEI 789

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            +  +     Q+++ A        L+ ++  G   +    +   + R G+    +   E 
Sbjct: 790 EEGALSEERYQEMLAA-----NDLLVTINKPGAGNLTSAHDYRVSGRGGQGVGAMKGGEI 844

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC--FKIC 706
           +       GD + +     + +   +D I   SR   GVR+ +   G     +    +  
Sbjct: 845 VATFPVELGDQIMLATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGEEVVSVAWIAESG 904

Query: 707 EGLTWIDSAG 716
           E       + 
Sbjct: 905 EDDETAVVSE 914


>gi|268590585|ref|ZP_06124806.1| DNA topoisomerase IV, A subunit [Providencia rettgeri DSM 1131]
 gi|291313973|gb|EFE54426.1| DNA topoisomerase IV, A subunit [Providencia rettgeri DSM 1131]
          Length = 751

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 262/746 (35%), Positives = 438/746 (58%), Gaps = 23/746 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SEITHDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  +    VD+   ++   +EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEILLSELGHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+ +A +AL+D P ++++ ++ ++ GPDFPT   I+ SR+ I + Y+ GRG
Sbjct: 182 TDIPPHNAREVAQALVALLDKPTLNLDDIMAFVPGPDFPTEAEIISSRDDIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWEKEDGNA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESNHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW+A
Sbjct: 297 NPTRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILNEWIA 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ +  R + R++ + RR+ IL GLLIAYLNIDE+I IIR ED+PK V++SRF++++ 
Sbjct: 357 YRRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRTEDEPKAVLMSRFNISDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++ + ++L S ++    I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELAKERDDLQAILGSERRLNTLIKKEIQADAKDY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A   +  + ++  EPITVV+S+ GW+RS K H ++ + L++K
Sbjct: 477 GD-----DRRSPLHEREEAKAMSEHE-ILPSEPITVVLSDMGWVRSAKGHDIEPTNLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD  K A    +    + L T G++Y++    L S R  GE +   + L     I    
Sbjct: 531 AGDGFKGAARGKSNQAAVFLDTTGRSYSVDPLELPSARSQGEPLTGKLTLPPGATIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAV 663
           +     K L+ S  G  FI   ++++   + GK  + +    K+   +++  +    +  
Sbjct: 591 MAPDEQKYLMASDAGYGFICTFNDLVTKNKAGKALISLPENAKVLAPIELHNEQEDLLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYK------DGGISDVICFKICEGLTWIDSAGR 717
           + +  ++LIF +  +P++S+GKG ++ +           +   +          +    R
Sbjct: 651 ITKAGRMLIFPVADLPQLSKGKGNKIINIAGTQAATGDDLLTWLMILPVGASMTLHFGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKG 743
                  DL  +  +RG  G+ +P+G
Sbjct: 711 KLKFKAEDLQKYRSERGRKGTSLPRG 736


>gi|94500373|ref|ZP_01306905.1| DNA topoisomerase IV subunit A [Oceanobacter sp. RED65]
 gi|94427408|gb|EAT12386.1| DNA topoisomerase IV subunit A [Oceanobacter sp. RED65]
          Length = 748

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 279/747 (37%), Positives = 439/747 (58%), Gaps = 21/747 (2%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N   + E+ V+  SLR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL 
Sbjct: 2   NDIVIGEDGVERQSLRDYTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLK 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSA 126
            G+ +KKSAR VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   S 
Sbjct: 62  AGSKYKKSARTVGDVIGKFHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPKSF 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+++T+ AE++L  + +  VD++  ++    EP   PS+ PN+L NGT+GIAVG
Sbjct: 122 AAMRYTESKLTKYAEVLLSELGQGTVDWQPNFDGTMDEPCTLPSRLPNVLLNGTTGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN++E+  A + ++DNP+   E+LL+YI GPDFPT   I+  +  + + Y  G
Sbjct: 182 MATDIPQHNLREVANACIHMLDNPKADTEELLQYIPGPDFPTDAEIITPKADLQKMYHSG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG  ++RA +  E+       IV+T +P+Q   ++++E+IA+ +  K++P++ D+RDES 
Sbjct: 242 RGSVKMRAVYTREDGD-----IVITALPHQASGAKVLEQIADQMQKKKLPMVSDLRDESD 296

Query: 307 EDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   R+V+ PK+  +D + LM  +F  +D+E  + +N+N++ +  +PQV  LD I+KEW
Sbjct: 297 HENPTRLVITPKSNRVDVNQLMSHLFATTDLEKSYRVNLNMIGIDGLPQVKSLDMIIKEW 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L +R   + RR   R+  +  R+ IL GLL+A+LNIDE+I IIR+ED+PK  ++ RF L+
Sbjct: 357 LEYRITTVRRRLQHRLDKVLARLHILDGLLVAFLNIDEVIEIIRHEDEPKQELIKRFGLS 416

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AIL L+LR L KLEE +IK E D L  E+++++  L S ++    +  EI    E
Sbjct: 417 DKQAEAILELKLRHLAKLEEMKIKGEQDELSKERDQLEKTLGSERRLKTLVKKEITADAE 476

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RR+       A   +    M    P+TVV+S +GWIR+ K H VD + L 
Sbjct: 477 TYGD-----DRRSPIVSRDEAQALSEIDLMGAD-PVTVVMSEKGWIRAAKGHDVDGTGLQ 530

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           +K GD   I  +A T  + + L T G+AY++    L   RG+GE +   I+L   Q I T
Sbjct: 531 YKSGDKFLIQANAKTNQQAIFLDTGGRAYSVNIHGLPGARGYGEPVTGSINLASGQKIST 590

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK----LVVKVTGDH 660
             +     + L+ S  G  FI +  ++++  + GK  L    ++K       V  V  D 
Sbjct: 591 MVIGQPKDQYLMASEAGYGFITQYEDMVSKNKAGKALLN-KPDDKAIHSPVKVSDVEQDW 649

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI--CEGLTWIDSAGRS 718
           V  V    +LL F +  +P M++GKG ++ +    G   +I   +     +  +++  R 
Sbjct: 650 VVAVSNEGRLLTFPVADLPVMAKGKGNKIINLGTSGDEVLIGISLMKEGDMLIVNAGKRH 709

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
                +DL  + G+RG  G+ +P+GF 
Sbjct: 710 VKMKFSDLEHYQGERGRRGNKLPRGFQ 736


>gi|186686396|ref|YP_001869592.1| DNA gyrase subunit alpha [Nostoc punctiforme PCC 73102]
 gi|186468848|gb|ACC84649.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102]
          Length = 827

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 231/769 (30%), Positives = 391/769 (50%), Gaps = 29/769 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLSTGQVIPTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLVPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  ++   +L  + E+ V+F   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++P HN+ E+ +  +ALIDNP++  EKL + I GPDFPTGG I+     I E+Y +G+G
Sbjct: 186 TNVPPHNLGEVVDGLIALIDNPDLPDEKLFQLIPGPDFPTGGEII-GETGIREAYTIGKG 244

Query: 249 GFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G  +R    +EE+      +    I++TE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 245 GILLRGVATLEEIPASRGSKRRTAIIITELPYQVNKAAWIEKVADLVNQGRLQGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R  +P  +++ ++  + ++  F   +  +     P+ + L  +L+E
Sbjct: 305 ESDREGMRVVIELKRDTNPQEVLQHLYHQTALQMTFGAILLAIV-NGQPRQLSLRQLLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSR 420
           +L+ R E L RR ++ +     RV +++GLL A  N+D +I I+R           + S+
Sbjct: 364 FLSFREETLNRRYNYELGKAQSRVHLVEGLLKALSNLDRVIEILRQAPDGSTAKINLCSQ 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L+E Q DAIL + LR L  LE+  ++ E + +  +   ++ LLN  ++    +  ++R
Sbjct: 424 LDLSEVQGDAILAMPLRRLTSLEQQNLQQEFEQISEQISLLEQLLNDRRELLKALKKDLR 483

Query: 481 EVKEIFSKS--TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSH 536
            +K  +S    T +G  + +  E  ++     +    E     ++   +         S 
Sbjct: 484 SLKRKYSDPRRTKIGEEQKSRAEEQKSRAEEEELKSSEPAEEAILEFTQRGYVRRTQPSG 543

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
               +     + D +   +   T   +L+L+  GK Y +  G +    G     + LI +
Sbjct: 544 RKSKAENGLHDNDFIIQTVLTDTQKDLLILTGGGKVYPVNVGEIPPTTGRSPRGKPLITM 603

Query: 597 ------NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
                    + +V+ F+      T ++++++ +G    +   E    TR+G T LK+  +
Sbjct: 604 LSNTAQGAQEAVVSRFLLPDNLETQQMILLTKQGRIKRLSLGEFTNLTRRGITILKLKDD 663

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICF 703
           +++        G+H+ +     ++L F+ +   +P M R   G++           V C 
Sbjct: 664 DELSFTQFTKPGEHLILASSGGRVLRFATNDEQLPIMGRTAMGLQAFRLLKNQ-QMVGCV 722

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +    +      Y +           RG +G+   K   ++     
Sbjct: 723 TVGKDDHLLLVTQEGYAKRMAASQLRAANRGDLGTQALKFASKTDNLAG 771



 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 69/171 (40%), Gaps = 7/171 (4%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDL 596
             ++ L  K+ D L         + ++L S+ G+       +         A+ L    L
Sbjct: 653 RGITILKLKDDDELSFTQFTKPGEHLILASSGGRVLRFATNDEQLPIMGRTAMGLQAFRL 712

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE-EKMKL- 652
             NQ +V          LL+V+ +G A  +  S++ A  R   G   LK +S+ + +   
Sbjct: 713 LKNQQMVGCVTVGKDDHLLLVTQEGYAKRMAASQLRAANRGDLGTQALKFASKTDNLAGM 772

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY-KDGGISDVI 701
           V+ +    VA+V    +++   ++ +P + R  KG  +    +D  I  V 
Sbjct: 773 VIAIASGEVALVTNKERVVRIPVETVPILGRDVKGESIIQLNRDEKIITVA 823


>gi|83942520|ref|ZP_00954981.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36]
 gi|83846613|gb|EAP84489.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36]
          Length = 918

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 253/834 (30%), Positives = 400/834 (47%), Gaps = 109/834 (13%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V++   +   YL YA+S I  RAIPDLRDG KPVHRRII++M E G+    A++KSA+ 
Sbjct: 25  SVNIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHEKAYRKSAKS 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G  HPHGD ++YD+LVR+AQ F    PLI GQGNFG++DGDSAAA RYTE+R+ +
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VA  +   +D++ VDF D Y+ ++ EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 VASFMTGDLDKETVDFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  ALI+NP+++ E+L+EYI GPDFPTGGI++  R    ++Y  GRG   +RA+  V
Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIML-GRSGARKAYLEGRGSVIMRAKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EI YQV KS +IEKIAE +  K+I  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRFAIVIDEICYQVNKSTMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               +++M  ++  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++
Sbjct: 324 DATAEVVMNQLYRFTPMQTYFGCNMLALN-GGRPEQLTLRKFLTSFIDFREDVVARRTAY 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------------------- 412
            ++    R  IL GL +A  NIDE++A IR+                             
Sbjct: 383 LLRKARERSHILCGLAVAVTNIDEVVATIRSSADAAEAREKLMTRRWPAEQILQYIALID 442

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L S +
Sbjct: 443 DPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+ EVK+ F+       RRT   + S        + +I +E + V +++ G+
Sbjct: 503 RIMGIISDELAEVKDQFAVP-----RRTEIVDWSGDMD---DEDLIAREDMVVTVTSGGY 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     +S +  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 555 IKRTPLVDFRSQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 582 S--GRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S G     + S+   
Sbjct: 615 QGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKEWDDLQVVFATSAGTVRRNKLSDFTN 674

Query: 634 NTRKGKTFLKVSSEE---KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
             R GK  +K   +     +         D V +V  + + + F    +    SR   GV
Sbjct: 675 VMRNGKIAMKFEDDHADTTLINARIASNDDDVMLVTNSGRAIRFPATDVRVFNSRASVGV 734

Query: 688 RLQSYKDGGISDVICF-------------------------KICEGL------------- 709
           R            +                              EG              
Sbjct: 735 RGIKLNGDDEVVSMSIIRHFDASSEERTAYLKMRRAMAGLADDAEGDEDEAPADPNFSQE 794

Query: 710 ----------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                       +    +   +  +     +  RGG+G        R G  ++S
Sbjct: 795 RYAEMSAAENLLLTITEKGAGKLSSSHDYPVRGRGGLGVTAMDKAMRGGDIVAS 848



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 5/107 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   LL ++ KG   +    +     R G     +        +     V   D + +  
Sbjct: 802 AENLLLTITEKGAGKLSSSHDYPVRGRGGLGVTAMDKAMRGGDIVASFPVEMDDQIMLAT 861

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
              + +   ++ I   SR   GV++     G +   + +   +G   
Sbjct: 862 SKGQSIRVPVEGISFRSRSAGGVKVFDTGRGEVVVSVAWIADQGDET 908


>gi|315179147|gb|ADT86061.1| topoisomerase IV, subunit A [Vibrio furnissii NCTC 11218]
          Length = 757

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 277/754 (36%), Positives = 443/754 (58%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  L++Y+ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPQAGLSDLMQYVKGPDYPTEAEIISPQVELEKVYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        +V+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVKMRAVWHKEGAD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVSILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +++
Sbjct: 357 QFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGISD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++    +  E++   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKELKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 YGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHEVDCESLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLAHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     LV S  G  F+ + +++++  R GK  + +    ++     V     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGTDLLSKNRSGKALVNLPENAEIMAPQAVNDLESDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++ +GKG ++ +      K           + +G+T  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKAREEVVSHLMALPKGVTITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKPADLDNYRGERGRRGGLLPRGLQRVTRI 744


>gi|124516515|gb|EAY58023.1| DNA gyrase, A subunit [Leptospirillum rubarum]
 gi|206603408|gb|EDZ39888.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 816

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 248/752 (32%), Positives = 393/752 (52%), Gaps = 30/752 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   ++  YL Y++S I  RA+PD+RDG KPV RR++ AM EMG+  G  ++KSARIV
Sbjct: 10  VPIDDEMKTAYLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSARIV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+ VRL QPF  RYPLI GQGNFG++DGD+ AA RYTE R+  +
Sbjct: 70  GDVIGKYHPHGDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLEAL 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +E ++  ++E+ V+F   Y+E   EP V P++ P LL NG++GIAVGMAT+IP HN+ EI
Sbjct: 130 SEEMMAELEEETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNITEI 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNP++S++ LL  + GPDFPTGG ++  R  I  + R GRG   +R    +E
Sbjct: 190 IDGLLALIDNPDLSVDDLLAIVHGPDFPTGG-LIMGRSGIESALRTGRGSIVMRGVAEIE 248

Query: 260 E-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E        I++ EIPYQV K+RLIE+IAEL+    +  + DIRDES  D   V+    R
Sbjct: 249 ESTRADRMAIIIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLKR 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +P +++  ++  + ++T F  N   L   R P ++ L   L  +L+ R++V+ RR+ F
Sbjct: 309 DANPPVVLNRLYAQTPLQTSFGYNFVALVNQR-PMILSLREALVHFLSFRQDVVTRRTLF 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAILNLR 435
           R++    R  IL+GL  A   +D+IIA+IR+   P         +F+ +E Q  AIL++R
Sbjct: 368 RLRKARERFHILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQFAFSEIQARAILDMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I +E + +      ++ +L S  +    I  E   ++E +  +     R
Sbjct: 428 LQRLTALERDKIDAEYEEVRLLIRGLEDILGSRSRLMAVIREEFTALRENYGDA-----R 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           RT        D     ++MI  +P  + ++ +G+I+          +      S +  KE
Sbjct: 483 RTRIV---PEDGEISIESMIPNDPCYITLTYQGYIKRVSHDAYPTQRRGGKGRSGVALKE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTA 605
            D++ I L     + IL  +  GK Y + A  +   +    G+ ++  + L   + +   
Sbjct: 540 DDAVIITLTPTAHETILFFTDIGKVYRVKAHEIPEVQRTARGKPVRGFLPLAPEEKVTRM 599

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                ++    L+ V+  G       S   +  + G   L +   +++  V+    D HV
Sbjct: 600 LNVASFEGDRSLVFVTVNGIIKRTALSAYSSIRQSGIIALTLREGDRLAQVLVADADSHV 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            V       ++F I ++ E  R   GVR    ++          + E         + Y 
Sbjct: 660 LVATRRGMAILFPIHEVTEQGRTASGVRAIRLREDDRV-ADAEIVTETDPVAVVTEKGYG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +        RGG+G  + +G  + G  +S
Sbjct: 719 KRLDVAKFRHQHRGGMGLKISRGAEKIGAVVS 750



 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 2/125 (1%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            + A+  +E D +  A     TD + +++  G    L           G  +++      
Sbjct: 685 GVRAIRLREDDRVADAEIVTETDPVAVVTEKGYGKRLDVAKFRHQHRGGMGLKISRGAEK 744

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
              +V+      T  L +++SKG    V+ +E+    R   G   ++++ ++ +   V  
Sbjct: 745 IGAVVSLVKAGDTDDLTIITSKGVTNRVQANELRTMGRSAQGVIVMRLADDDTIVSAVVS 804

Query: 657 TGDHV 661
               V
Sbjct: 805 PPRDV 809


>gi|16273429|ref|NP_439678.1| DNA topoisomerase IV subunit A [Haemophilus influenzae Rd KW20]
 gi|260580312|ref|ZP_05848141.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae RdAW]
 gi|1172017|sp|P43702|PARC_HAEIN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1574370|gb|AAC23175.1| topoisomerase IV, subunit A (parC) [Haemophilus influenzae Rd KW20]
 gi|260092989|gb|EEW76923.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae RdAW]
          Length = 747

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 275/749 (36%), Positives = 435/749 (58%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLD 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 ANP-----RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 651 TSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRAERGRKGSTLPRGLHTN 739


>gi|320109047|ref|YP_004184637.1| DNA gyrase subunit A [Terriglobus saanensis SP1PR4]
 gi|319927568|gb|ADV84643.1| DNA gyrase, A subunit [Terriglobus saanensis SP1PR4]
          Length = 960

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 224/777 (28%), Positives = 370/777 (47%), Gaps = 79/777 (10%)

Query: 1   MGVDNISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           +G D  +  N        ++ ++++   +   YL Y++S I  RA+PD+RDG KPVHRRI
Sbjct: 11  LGGDGNNGENVPTGPGALHMISINIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRI 70

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM EMGL     + K A++VG  +G  HPHGD ++YD++VRLAQPF  RYPL+ GQGN
Sbjct: 71  LYAMQEMGLQANKKYTKCAKVVGHTMGNYHPHGDSAIYDAMVRLAQPFSMRYPLVDGQGN 130

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG++DGD  AA RYTEAR+ ++A  ++  +D D VDF   Y+E   EP V P+++PNL+ 
Sbjct: 131 FGSVDGDPPAAMRYTEARLMKIAGEMIADIDMDTVDFTPNYDESSLEPTVLPARYPNLIV 190

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG+SGIAVGMAT+IP HN+ E+  A + L++NP   + ++LE++ GPDFPT G  +  + 
Sbjct: 191 NGSSGIAVGMATNIPPHNLTEVINACITLVNNPSAGLAEVLEHVQGPDFPTAG-FIYGKS 249

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I  +YR GRG F +RA+   E +  G   I+V+EIPYQV K+ LI++IAEL+  K I  
Sbjct: 250 GIANAYRTGRGKFLMRAKCSRENISGGREAIIVSEIPYQVNKNTLIKRIAELVTEKIIDD 309

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + D+RDES  D   ++    R+  P++++  +F  + M+  F +   +      P  +PL
Sbjct: 310 ISDVRDESDRDGMRIVIELKRTAQPEIVLNQLFKHTSMQESFSMIF-LAVHNGRPVELPL 368

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
              ++ ++ HR +V+ RR++F +     R  IL G  IA  ++D +I  IRN        
Sbjct: 369 PDAIRAFIDHRVDVVRRRTAFLLNKARDREHILLGYQIALDHLDAVIRTIRNSSSRADAR 428

Query: 418 VSRFSL-------------------------------------------TENQVDAILNL 434
            + F                                             +  Q+D IL L
Sbjct: 429 ENLFKYFSGKTISLRGTELAGVTLDASKYGISADLLPLGPGGTVGTLILSYRQIDTILEL 488

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L +L   ++  EL  +     + +S+L S K+    I  E+ EV+E +        
Sbjct: 489 QLYRLTQLSMDEVFKELGQVRENIAEYESILASDKKLRRVIIKELEEVREKYGD-----V 543

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFK 546
           RRT   +          + +I  E + V +S+ G+++     +             +  +
Sbjct: 544 RRTQIID---ESSELTLEDLIADEQVAVTVSHSGYLKRTPISTYRQQRRGGTGRIGMKTR 600

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604
           E D +   +   T   +L  +  G+ + L    +      G G+ I  L+ L   + +V 
Sbjct: 601 EEDFVAQLIVDSTHAYLLCFTNSGRVFWLKIYEIPDVLAAGKGKHIASLLALQPGEKVVA 660

Query: 605 AFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                   D++  +   + +G        +      +G   + +  ++++  V   +G+ 
Sbjct: 661 YLPVRNLEDASKYIFFATREGIVKKTPLPDFSNVMARGIIAINIDKDDELIAVRITSGED 720

Query: 661 VA-VVGENRKLLIFSID-------QIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
           V  +       + FS          +  M R   G +  + K G             
Sbjct: 721 VVFLATREGMAVRFSEKYDPEKSGGLRPMGRNAGGNKGITLKKGDYVIGAAVTDSRE 777



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTG-DHVAVVGENRK 669
           +L V+  G     +  E     R G   + + +     K+  +  V     +  + +  K
Sbjct: 850 ILSVTENGYGKRTDVEEYRLTNRGGSGVINMKASAKTGKVSSIQLVDETTELMAISQFGK 909

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++    + I    R  +GV+L +           
Sbjct: 910 IIRIDTNTIRAAGRSTQGVKLLNLDTDDKVAAAV 943



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 23/94 (24%), Gaps = 2/94 (2%)

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           +  V EN       +++    +RG  GV                 + E    +  +    
Sbjct: 850 ILSVTENGYGKRTDVEEYRLTNRGGSGVINMKASAKTGKVSSIQLVDETTELMAISQFGK 909

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +        R   G  +        K  ++
Sbjct: 910 IIRIDTNTIRAAGRSTQGVKLLN-LDTDDKVAAA 942



 Score = 45.1 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 26/103 (25%)

Query: 662 AVVGEN--RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW-------- 711
            +  +   R+++I  ++++ E            K G +           LT         
Sbjct: 518 ILASDKKLRRVIIKELEEVRE------------KYGDVRRTQIIDESSELTLEDLIADEQ 565

Query: 712 --IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +   Y +          +RGG G +  K   R   F++
Sbjct: 566 VAVTVSHSGYLKRTPISTYRQQRRGGTGRIGMKT--REEDFVA 606


>gi|260771247|ref|ZP_05880174.1| topoisomerase IV subunit A [Vibrio furnissii CIP 102972]
 gi|260613844|gb|EEX39036.1| topoisomerase IV subunit A [Vibrio furnissii CIP 102972]
          Length = 757

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 277/754 (36%), Positives = 442/754 (58%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  L++Y+ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPQAGLSDLMQYVKGPDYPTEAEIISPQVELEKVYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        +V+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVKMRAVWHKEGAD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVSILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +++
Sbjct: 357 QFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGISD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++    +  E++   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKELKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHEVDCEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLAHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     LV S  G  F+ + +++++  R GK  + +    ++     V     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGTDLLSKNRSGKALVNLPENAEIMAPQAVNDLESDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++ +GKG ++ +      K           + +G+T  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKAREEVVSHLMALPKGVTITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKPADLDNYRGERGRRGGLLPRGLQRVTRI 744


>gi|257454137|ref|ZP_05619410.1| DNA topoisomerase IV, A subunit [Enhydrobacter aerosaccus SK60]
 gi|257448465|gb|EEV23435.1| DNA topoisomerase IV, A subunit [Enhydrobacter aerosaccus SK60]
          Length = 749

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 276/754 (36%), Positives = 438/754 (58%), Gaps = 12/754 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    ++ +    + N    S+    E  YL YA+  I +RA+P + DG KPV RRI++A
Sbjct: 1   MSDTLVAKTTKANDLNNPTRSVAEFTENAYLNYAMYVIMDRALPHIADGLKPVQRRIVYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL   A  KKSAR +G+VIGK HPHGD + Y+++V ++QPF  RYPLISGQGNFG+
Sbjct: 61  MSELGLKNTAKPKKSARTIGDVIGKYHPHGDSACYEAMVLMSQPFSYRYPLISGQGNFGS 120

Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            D   S AA RYTEA+++  A  +L  + +  VD++D ++    EPV  P++ PN+L NG
Sbjct: 121 PDDPKSFAAMRYTEAKLSAYANTLLNELGQGTVDWQDNFDGTLQEPVTLPARLPNILLNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           T+GIAVGMAT IP HN+ E+ +  +AL+  P ++ ++L +YI  PD PT   I+ S E +
Sbjct: 181 TTGIAVGMATDIPPHNLSEVVKGCIALLKKPTMTEKELAKYIPAPDLPTKAEIITSPEDL 240

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           ++ Y+ GRG +++RA + V++  +    +++  +PYQ+  +++IE+IA LI AK++P + 
Sbjct: 241 LQLYKTGRGSYKMRATYHVDDKEKNL--VIIDALPYQISGNKIIEQIANLINAKKLPWVT 298

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           DI DES      RIVL  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  L
Sbjct: 299 DIHDESDHQNACRIVLELRSSRVDIEPMMSHLFASTDLESNYRVNLNMIGTNGKPQVKSL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL EWL+ RR+ + RR  +R+  I++R+ IL GLLIAYL+IDE+I IIR E+ PK  +
Sbjct: 359 LTILTEWLSVRRDTVTRRLQYRLDKIEQRLHILAGLLIAYLHIDEVIRIIREEEDPKAEL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++R+ LTE+Q +AIL++RLR L +LEE ++K E  +L AEK +I+  LN+  +    +  
Sbjct: 419 MTRYDLTESQANAILDIRLRQLARLEEIELKREQSDLEAEKAQIEGYLNNPDKLTGLMIE 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+    +         +R++   E + A  A  +  +   EP+TV++S  GWIRS K H 
Sbjct: 479 ELTADMKEHGD-----KRQSPIVERTEA-TALKETDLAPSEPVTVIVSKSGWIRSAKGHD 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           VD + ++++ GD+        + +++ L+   G++Y L A  L S RG GE +  L+   
Sbjct: 533 VDAANMNYRSGDAYLAHAQGKSNEKVYLMDNTGRSYRLDAHTLPSARGQGEPLTSLLKPT 592

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                V   +     KL++ SS+G  FI   +++  N + GK  +       +       
Sbjct: 593 GGASFVNVLMGQDDSKLIMASSQGYGFINTFADLDTNQKAGKNVINFDDAFSLITHQIGE 652

Query: 658 GDHVA-VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            D +  VV     LL++ + ++P M +GKG +L   KDG     I          +DS  
Sbjct: 653 QDTLVGVVSSAGHLLVYPLTELPMMKKGKGNKLIDLKDGDSVVAITTFSEGDSLSLDSGK 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R+      D+  ++G RG  G L+PKGF +  K 
Sbjct: 713 RTLTLKPMDIANFMGARGKRGGLLPKGFQKVSKV 746


>gi|319776383|ref|YP_004138871.1| DNA topoisomerase IV subunit A [Haemophilus influenzae F3047]
 gi|317450974|emb|CBY87203.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae F3047]
          Length = 747

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 275/749 (36%), Positives = 435/749 (58%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLD 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ 
Sbjct: 357 FRRATVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 ASP-----RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 651 TSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRAERGRKGSTLPRGLHTN 739


>gi|219684136|ref|ZP_03539080.1| DNA gyrase, A subunit [Borrelia garinii PBr]
 gi|219672125|gb|EED29178.1| DNA gyrase, A subunit [Borrelia garinii PBr]
          Length = 810

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/760 (33%), Positives = 421/760 (55%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AF
Sbjct: 6   NKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYT
Sbjct: 66  KKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++ 
Sbjct: 126 EAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMA 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +
Sbjct: 186 PHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+ +EE       I+VTEIPY V KS L+ K+A L+  +++  L DIRDES  +   +
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVALLVKEEKLEGLLDIRDESDREGIRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP ++M  ++  ++ +  F +N   L    +P+ + L+ +L E++ HR+ ++
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVD-GIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR  F ++    +  IL+GL IA  NIDE+I II++       +  +V+ F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLVANFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           ++L+++L+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E   +   F   
Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPARIINIIREETINLGLKFGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    +++KE I V+++ +G+++ L  +           LS
Sbjct: 484 -----RRTKII-YDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHN 599
           +    +GD + IAL  +T D + ++S +GK Y + A  +       +   +   I+L   
Sbjct: 538 SFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQ 597

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+T            LL+ ++ G     E ++      +G   +K++ ++ +     V
Sbjct: 598 EEILTIKNSKELTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEVV 657

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             D  V  + +     IF+   +   +RG +GV     K+G +  V    I E    +  
Sbjct: 658 LKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLAIKENPYLLII 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
           +   Y +  +       KRG  G    K   +  G  + +
Sbjct: 717 SENGYGKRLSISKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 60/184 (32%), Gaps = 7/184 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                      S  +  +   + D +  A      ++++ LS  G A+   + ++     
Sbjct: 626 RFESTDFKTVKSRGVIVIKLNDKDFVTSAEVVLKDEKVICLSKKGSAFIFNSRDVRLTNR 685

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
             + +  +  L      V          LL++S  G    +  S+I    R    +    
Sbjct: 686 GTQGVCGM-KLKEGDLFVKVLAIKENPYLLIISENGYGKRLSISKISELKRGATGYTSYK 744

Query: 646 SEEK-----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             +K     +  +     D + +V +  K L     ++ E  +  +G+++    +  +  
Sbjct: 745 KSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVS 804

Query: 700 VICF 703
           V  F
Sbjct: 805 VSKF 808


>gi|68249954|ref|YP_249066.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 86-028NP]
 gi|68058153|gb|AAX88406.1| topoisomerase IV subunit A [Haemophilus influenzae 86-028NP]
          Length = 747

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 274/749 (36%), Positives = 433/749 (57%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W      +    I+++ +P+Q   S++I +IAE + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRATW-----KQEDGEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKNYRVNMNMIGLDHKPAVKGLLEILNEWLD 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 ASP-----RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 651 TSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRAERGRKGSTLPRGLHTN 739


>gi|332558057|ref|ZP_08412379.1| DNA gyrase subunit A [Rhodobacter sphaeroides WS8N]
 gi|332275769|gb|EGJ21084.1| DNA gyrase subunit A [Rhodobacter sphaeroides WS8N]
          Length = 920

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 260/832 (31%), Positives = 403/832 (48%), Gaps = 107/832 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 23  QVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKSARP 82

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD ++Y +LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 83  VGDTMGKYHPHGDGAIYYALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDK 142

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 143 PAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 202

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  V
Sbjct: 203 VVDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARV 261

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES      V+    R
Sbjct: 262 EEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELKR 321

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++
Sbjct: 322 DATPEVVLNQLWRFTPMQTTFGCNMLALN-GGRPEQLTLRDFLSHFLTFREDVVARRTAY 380

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------------- 415
            ++    R  IL GL +A  N+DE++A IR+   P                         
Sbjct: 381 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 440

Query: 416 ------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   ++  EL  L A+      +L S +
Sbjct: 441 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 500

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK++F+       RRT   E +        + +IE+E + V I++ G+
Sbjct: 501 RIMAIISDELREVKDLFAVP-----RRTEISEWAGD---LEDEDLIEREDMVVTITSGGY 552

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 553 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 612

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S+G+      S+   
Sbjct: 613 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTN 672

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQ 690
             R GK  +K+     +  V      D V +V    + + FS   +     R   GVR  
Sbjct: 673 VKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGI 732

Query: 691 SYKDGGISDVICFK---------------------------------------------- 704
               G     +                                                 
Sbjct: 733 RLASGDRVVSMSVIRHFEADPAERAAYLKQRRLMAGVTEEAEADEEEDAVEAGQLSPTRY 792

Query: 705 ---ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +    R   +  +     +  RGG G    +   R G+ ++S
Sbjct: 793 AEMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRGGQLVAS 844



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L ++++G   I    +     R G+            ++     V   D V +  
Sbjct: 798 AEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRGGQLVASFPVEMSDQVMLAT 857

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              + +   ++QI   SR   GVR+  +  G   +V+   
Sbjct: 858 SGGQSIRVPVEQISFRSRSAGGVRV--FDTGASEEVVSVA 895


>gi|261868259|ref|YP_003256181.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413591|gb|ACX82962.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 751

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 273/750 (36%), Positives = 445/750 (59%), Gaps = 22/750 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + ++  E ++ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 3   TESINYEGIEQMPLRHFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G +D   S A
Sbjct: 63  TAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVDDPKSFA 122

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+R+++++E++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGM
Sbjct: 123 AMRYTESRLSKISEILLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGM 182

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ EI +AA+ L+DNP+ ++++LL  + GPDFPT   I+  +E I + Y+LGR
Sbjct: 183 ATDIPPHNINEIADAAVMLLDNPKTTLDELLTVVQGPDFPTEAEIISPKEDIRKIYQLGR 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E+       IV++ +P+Q   S++I +IAE + AK++P++EDIRDE+  
Sbjct: 243 GSIKMRATWKKEDGE-----IVISALPHQSSPSKVIAQIAEQMNAKKLPMVEDIRDEADH 297

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIVL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 298 ENPVRIVLVPRSNRVDIDAVMAHLFATTDLEKSYRVNMNMIGLDHKPAVKNLLEILTEWL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RR  + RR  + +  +  R+ IL+GL+IA+LNIDE+I IIR ED+PK  +++RF+L++
Sbjct: 358 SFRRTTVTRRLQYHLNKVLARLHILQGLMIAFLNIDEVIHIIRYEDEPKAELMARFNLSD 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+++++E   L  E+  ++ +L S ++    +  EI++  +I
Sbjct: 418 EQAEAILNLRLRHLAKLEEHELQAEQAELEKERSSLEEILGSERRLNTLLKKEIQQDAKI 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           ++       RR+   E + A KA  +  M+  EP+TV++S  GW+R  K H +D   L +
Sbjct: 478 YASP-----RRSPLVERAEA-KAIAENEMLPTEPVTVILSEMGWVRCAKGHDIDPQGLSY 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD      +  +    + + + G++Y L    L S R  GE +   + L     I   
Sbjct: 532 KAGDKYLAHAYGKSNQAAVFIDSTGRSYALDPLTLPSARSQGEPLTGKLTLPAGATIDQL 591

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV- 664
            + +    LL+ S  G  FI + +++IA  + GK  + +    K+   + +      +V 
Sbjct: 592 LIENEDQPLLMASDAGYGFICKFADLIARNKAGKALISLPENAKVLPPLTLKNSTALLVA 651

Query: 665 -GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWIDSAGRS 718
                ++LIF    +PE+S+GKG ++ +      K      V    I E  + +  +GR 
Sbjct: 652 LTSAGRMLIFPAQDLPELSKGKGNKIVTIPSANAKARSELLVHLLLIEENSSLVFHSGRR 711

Query: 719 Y-NRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                  DL  +  +RG  G+ +P+G   +
Sbjct: 712 KIVLKPEDLQKFRAERGRKGTQLPRGLHSN 741


>gi|157963370|ref|YP_001503404.1| DNA topoisomerase IV subunit A [Shewanella pealeana ATCC 700345]
 gi|157848370|gb|ABV88869.1| DNA topoisomerase IV, A subunit [Shewanella pealeana ATCC 700345]
          Length = 755

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 263/757 (34%), Positives = 432/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HNV+E+  A + L+DNP+  + +L+E++ GPD+PT   I+     I + Y+
Sbjct: 181 VGMATDVPPHNVKELVGACVELLDNPKADLARLMEFVPGPDYPTEAEIITPAADITKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     +  +V+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYTVE-----NGEVVITALPHQASSGKILEQIASQMQAKKLPMVTDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + +M  +F  +D++  + +N+NVL +   PQV  L  +L 
Sbjct: 296 SDHESPVRMVIVPRSNRVDCEQMMAHLFATTDLQKSYRVNLNVLGLNGRPQVKGLLELLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  +R+  I  R+ IL  L+IA+LNIDE+I IIR  D PK  ++SRF+
Sbjct: 356 EWLTFRMTTVKRRIEYRLDKILSRLHILDALMIAFLNIDEVIEIIRYNDDPKAELISRFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAIL+L+LR L KLEE++IK+E   L AE++K+  LL+S ++    I  E+ + 
Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKAEQSELEAERDKLQLLLSSERRMKTLIKKELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E + +   T Q+  +  E +TVV+S +GW+R  K H VD  +
Sbjct: 476 SEDYGDE-----RRSPLVERTESRALTEQEL-VPVESVTVVLSEKGWVRCAKGHEVDGKS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + T G+A+      L S R  GE I    +L     +
Sbjct: 530 LSYKAGDGFLRSAQGRSNQPSVFIDTSGRAFATETHTLPSARSQGEPITTRFNLASGATM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     L+ S  G  FI    ++++  + GK  L + +  K+    +V      
Sbjct: 590 EHLLLSDEEQCYLLASDAGYGFICANKDMVSRNKAGKALLSLPANAKVLFPQRVDKSKAQ 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWID 713
            +  +    ++L+FS+D +P++S+GKG ++             +   +     +    + 
Sbjct: 650 SILAITNEGRMLLFSLDALPQLSKGKGNKIIGIPGERAKNREELLLHLNVIPEDTSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|254497413|ref|ZP_05110212.1| DNA topoisomerase IV subunit A [Legionella drancourtii LLAP12]
 gi|254353369|gb|EET12105.1| DNA topoisomerase IV subunit A [Legionella drancourtii LLAP12]
          Length = 756

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 274/750 (36%), Positives = 440/750 (58%), Gaps = 25/750 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +  ++ E  +  +L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL  
Sbjct: 2   TKKIMNEVAEQKALTEFTEKAYLDYSMYVILDRALPHIADGLKPVQRRIVYAMSELGLKA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   S A
Sbjct: 62  TAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVGM
Sbjct: 122 AMRYTEARLSAYADVLLAELQQGTVDWVDNFDGTLQEPSLLPARLPNILLNGATGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           A+ I  HN+ E+  A + L+DNP+  +  ++++I GPDFPT   I+   E+I   Y  G 
Sbjct: 182 ASDILPHNLTEVANACVHLLDNPQADLSAIMQHIKGPDFPTAAEIITPPEAITTLYATGH 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA +           IV+T +PYQV  ++++E+IA  +  K++P++ED+RDES  
Sbjct: 242 GSIKMRAIY-----NPEKQNIVITALPYQVSGAKVMEQIALQMQQKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   R+V+ P++  +D D LM  +F  +D+E  + +N N++ +   P+V  L  IL EWL
Sbjct: 297 EHPTRLVIIPRSNRVDVDGLMSHLFATTDLERSYRVNFNMIGLDGKPRVKNLITILSEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            +R  V+ RR  +R+  +  R+ +L+GLLIAYLNIDE+IAIIR  + PK  +++RF+L+E
Sbjct: 357 IYRVSVVKRRLEYRLAKVLERIHVLEGLLIAYLNIDEVIAIIREHEHPKQGLIARFNLSE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L KLEE +I+ ELD L  E++ + S+L S ++  N +  EI + ++ 
Sbjct: 417 RQAEAILEMKLRHLAKLEEIKIRGELDELSIERDHLQSILTSEQKLKNLVKDEIIKDRDA 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+    V +  +A  ++ ++  EPITVV+S  GW+R+ K H ++ S L +
Sbjct: 477 FGD-----VRRSPII-VRQESQALKEEDILPNEPITVVLSKNGWVRAAKGHDINGSELSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD  K    A +  +I+   ++GK Y+LP  +L S RG GE +   ++        T 
Sbjct: 531 KAGDEFKAQATARSNQQIVFFDSEGKVYSLPGHSLPSARGQGEPLTGKLNPAEGILFETV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VA 662
              ++   +L+ S  G  F+ + S++    R GK  +K+ +  ++     +       VA
Sbjct: 591 VGGEAEQLVLLASDAGYGFVAKMSDLYVKNRNGKACVKLPAASRILPPRILPNQEELLVA 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
                 +LLIFSI ++PE+SRGKG +L S        ++  + DV      + LT   + 
Sbjct: 651 CATSVGRLLIFSIKELPELSRGKGNKLISIPATKTASREEYVIDVQVLSNQDVLTV-HAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            R +     DL  + G+RG  G+ +P+G  
Sbjct: 710 KRHFTLKGADLEHYKGERGRRGNRLPRGLQ 739


>gi|17227937|ref|NP_484485.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120]
 gi|17129786|dbj|BAB72399.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120]
          Length = 835

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 246/782 (31%), Positives = 390/782 (49%), Gaps = 41/782 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLSTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL+ G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  ++   +L  + E+ V+F   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID P+++ EKLLE I GPDFPTGG IV     I E+Y  G+G
Sbjct: 186 TNIPPHNLGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIV-GEAGIREAYITGKG 244

Query: 249 GFRVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              +R    VEEV  G        I+VTE+PYQV K+  IEK+AEL+   R+  + D+RD
Sbjct: 245 SIVLRGVATVEEVPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R  +P  +++ ++  + ++T F   +  +     P+ + L  +L+E
Sbjct: 305 ESDREGMRVVIELKRDTNPQEVLQHLYHQTALQTNFGAILLAIV-EGQPRQLSLRQLLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSR 420
           +L  R   L RR S+ +     R+  ++GLL A   +DE+I I+R             SR
Sbjct: 364 FLNFRENTLNRRYSYELGKAASRLNTVEGLLKALSKLDEVIGILRQAPDGSTAKVTLCSR 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L+E+Q DAIL++ LR L  LE+  ++ E   L  +   +D LL+  K+    +  ++R
Sbjct: 424 LDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQITLLDRLLSDRKELLKALKKDLR 483

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ-------------AMIEKEPITVVISNR 527
            +K  +           +  E+ +  KA  Q               +   E   + I++R
Sbjct: 484 SLKRKYGDPRRTKLGAKSLEELPKNKKADKQNSSAKTDEDTENLSPLEPAEEAILEITHR 543

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           G++R ++            E D +       T   +L+L+  GK Y +  G++    G  
Sbjct: 544 GYLRRIQPGKKSKVENGLLEHDFIIQTNITDTHKELLILTNGGKLYPVKVGDIPPTTGRS 603

Query: 588 EAIQLLIDL------NHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKG 638
                LI +       + + +V+  +        +L++++ +G    +   E+   TR+G
Sbjct: 604 PRGTPLITMLTSTAQGNQEPVVSRLLLPENLAAQQLILLTKQGRIKRLSLEELTNLTRRG 663

Query: 639 KTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKD 694
            T LK+  ++++ L      G  + +     +LL FS +   +P M R   G++      
Sbjct: 664 VTILKLKDDDELLLTQFSKPGQQLILASSGGRLLRFSTNDEQLPIMGRTAMGLQAFRLLR 723

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF---L 751
                V C    +    +      Y +           RG +G+   K   ++      +
Sbjct: 724 NQRM-VGCVNAAQAEHLLLVTEEGYAKRLPVNQIKSANRGDLGTQSMKFVNKTDNLAAMV 782

Query: 752 SS 753
            +
Sbjct: 783 GA 784



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTCKLLVVSS 619
            +++L S+ G+       +         A+ L    L  NQ +V          LL+V+ 
Sbjct: 685 QQLILASSGGRLLRFSTNDEQLPIMGRTAMGLQAFRLLRNQRMVGCVNAAQAEHLLLVTE 744

Query: 620 KGNAFIVEESEIIANTRK--GKTFLK-VSSEEKMKL-VVKVTGDHVAVVGENRKLLIFSI 675
           +G A  +  ++I +  R   G   +K V+  + +   V   T   +A++    +++    
Sbjct: 745 EGYAKRLPVNQIKSANRGDLGTQSMKFVNKTDNLAAMVGANTSGEMALLTNRERVVRIPT 804

Query: 676 DQIPEMSR-GKGVRLQSY-KDGGISDVI 701
           D +P + R GKG  +    +D  +  V+
Sbjct: 805 DTVPILPRDGKGESILQLNRDEKVIAVV 832


>gi|145632920|ref|ZP_01788653.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 3655]
 gi|144986576|gb|EDJ93142.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 3655]
          Length = 747

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 275/749 (36%), Positives = 435/749 (58%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRAIWKKEDGE-----IIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLD 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 ASP-----RMSQLVEREEA-KMISENDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 651 TSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFHSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRAERGRKGSTLPRGLHTN 739


>gi|167855632|ref|ZP_02478391.1| DNA topoisomerase IV subunit A [Haemophilus parasuis 29755]
 gi|167853259|gb|EDS24514.1| DNA topoisomerase IV subunit A [Haemophilus parasuis 29755]
          Length = 747

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 270/744 (36%), Positives = 436/744 (58%), Gaps = 23/744 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +  +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   TTEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGM
Sbjct: 122 AMRYTESKLSKMAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+  A++ L+DNP  S+  +L+ + GPD+PT   I+  R  I + Y  GR
Sbjct: 182 ATDIPPHNINELAAASVKLLDNPTASLSDILDVVQGPDYPTEAEIITPRSEIAKIYEQGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV+  +P+Q   S++IE+IA  +  K++P+++DIRDES  
Sbjct: 242 GSIKMRAVWKREENN-----IVINALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIVL P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPIRIVLEPRSNRIDYDGLMDHLFATTDLEKSYRINMNMIGLDSKPAVKNLLTILTEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           A RR  + RR +FR+  I  R+ IL+GL+IA+LN+DE+I IIRNED PK  +++RF L++
Sbjct: 357 AFRRTTVTRRLNFRLDKIISRLHILEGLMIAFLNLDEVIEIIRNEDNPKAELIARFQLSD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+++K+E   L  E+E +  +L S ++  N I  EI    + 
Sbjct: 417 EQAEAILNLRLRHLAKLEEHELKAEQQKLEEEREHLQGILGSERRLNNLIKKEIEADAKA 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E + A KA  +  +   EP+TV++S +GW+R  K H +D+  L +
Sbjct: 477 FASP-----RRSPLVERAEA-KAISESDLTPTEPVTVILSEKGWVRCAKGHDIDVQNLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GDS     +  +   ++ + + G++Y L   +L S R  GE I   I L     +   
Sbjct: 531 KAGDSYLAHAYGKSNQPVVFIDSTGRSYALDPLSLPSARSQGEPITGKISLPDGATVQCV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVV 664
            + + + K+L+ S  G  FI +  ++++  + GK  + ++   K+     +  G+   +V
Sbjct: 591 LMAEESRKVLMASDSGYGFICQFEDLVSRNKAGKAVISLTENAKVLPPQLLKEGEENLLV 650

Query: 665 --GENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAG 716
                 ++L+F + ++PE+S+GKG ++ +           +   +            S  
Sbjct: 651 AMSNTGRVLVFPVSELPELSKGKGNKIINISAQAAKERADLLSRLLIINPTSSLVFVSGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLV 740
           R       D+  + G+R   G+ +
Sbjct: 711 RKITLKPTDIEHYRGERARKGTQL 734


>gi|294786214|ref|ZP_06751468.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|294485047|gb|EFG32681.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
          Length = 911

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 222/784 (28%), Positives = 371/784 (47%), Gaps = 40/784 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +   L    +K++ L+  + E YLAYALS I ERA+PD+RDG KPVHRR+++AM + G 
Sbjct: 21  EDFGLLKGTRIKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGY 80

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D A
Sbjct: 81  RPDRGYNKCSRVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPA 140

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V PS+FPNLL NG++GIAVG
Sbjct: 141 AAMRYTECRMAPLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVG 200

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ +     +D+PE S E+LL      I GPDFPTG  I+   + I ++
Sbjct: 201 MATNIPPHNMREVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATIL-GHKGIEQA 259

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  + D+R
Sbjct: 260 YRTGRGLITMRAVVNTEEIN-GRLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMR 318

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  + ++  F  NM  L    VP+ + LD  +
Sbjct: 319 DETSGRTGQRLVLVLKRDAVPKVILNNLYKHTQLQQTFGANMLALVD-GVPRTLSLDAFI 377

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + W++H+ EV+ RR+ +  +  + R  IL+G L A   I+E+IA+IR             
Sbjct: 378 RHWISHQLEVVDRRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLM 437

Query: 422 ---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + + Q DAIL ++LR L  LE  +I  E + L+ +    + +L   ++Q   +  E
Sbjct: 438 DLLDVDQVQADAILAMQLRRLAALERQKIIDEHEELMRKIADYNDILAKPERQRAIVGDE 497

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+ + +           +         A     +       +  +     R+      
Sbjct: 498 MDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVTVTHSGYIKRTKADEYRAQHRGGK 557

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T + +L  + +G+ Y +    +  G    +   +  L+ L
Sbjct: 558 GIKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEGSRDSKGQHVANLLQL 617

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------- 646
             ++ I        YD    L++ +  G       +E  +  + G   +++         
Sbjct: 618 GPDEKIQQVLSIHDYDEAKYLVLATRSGKIKKTRLNEYDSTRQGGLIAVRLREIEGAFRT 677

Query: 647 ---------EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYK 693
                     +++         D + VV +    + FS D   +  M R   GV+   ++
Sbjct: 678 DEEGNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDETLRSMGRQTAGVQAMKFR 737

Query: 694 ----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               +  +  +           +      + +        L  R G G          G 
Sbjct: 738 GQAGEDLLLSMDVVPAESDSDLVVVTNEGFAKRTALSEYRLQGRNGYGVKAINLVEGRGS 797

Query: 750 FLSS 753
            + +
Sbjct: 798 LVGA 801


>gi|323357951|ref|YP_004224347.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
 gi|323274322|dbj|BAJ74467.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
          Length = 876

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 228/794 (28%), Positives = 370/794 (46%), Gaps = 51/794 (6%)

Query: 1   MGVDNISNSNTLVEE------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVH 54
           M  D     + +  E       +  V L+  ++  YL YA+S I  RA+P + DG KPVH
Sbjct: 1   MADDITPEPDEVRSEPAHNHGRIDQVDLQLEMQRSYLDYAMSVIVGRALPRVEDGLKPVH 60

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR+I+ M + G     +F K AR+VGEV+G  HPHGD  +YD+LVRL QP+  RYPL  G
Sbjct: 61  RRVIYGMYDGGFRPDKSFSKCARVVGEVMGHYHPHGDAPIYDALVRLVQPWSLRYPLALG 120

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           QGNFG+     AAA RYTE +M+Q+A  +++ ++E+ VDF D Y+ +  EPVV PS+FPN
Sbjct: 121 QGNFGSPGNQGAAAPRYTETKMSQLALEMVRDIEEETVDFEDNYDGQTQEPVVLPSRFPN 180

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGG 230
           LL NG+ GIAVGMAT+IP HN++E+   AL  ++NP+ + E+    L+E I GPDFPT  
Sbjct: 181 LLVNGSVGIAVGMATNIPPHNLREVSAGALWALENPDATREELLEALMERIPGPDFPTAA 240

Query: 231 IIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
            I+     I ++YR GRG   +RA   +EE+ +G  C+V+TE+PYQV    +  KI +L 
Sbjct: 241 QIL-GTRGIKDAYRTGRGSITMRAVVNIEEI-QGRTCLVITELPYQVNPDNVAVKIGDLA 298

Query: 291 IAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
              +I  + DIRDE++    + ++    R     +++ +++  + ++  F  NM  +   
Sbjct: 299 REGKITGIADIRDETSGRTGQRLVVVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVD- 357

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
            VP+ + LDG +  W+ H+  V+ RR+ +R++  + R+ IL+G L A   +DE+IA+IR 
Sbjct: 358 GVPRTLSLDGFVSHWIDHQVNVIVRRTRYRLRKAEERMHILRGYLKALDALDEVIALIRR 417

Query: 410 ED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                     +     + + Q  AIL+++LR L  LE  +I  E   L A     + +L 
Sbjct: 418 SPTAQDANEGLQKLLDIDDIQAQAILDMQLRRLAALERQKIVDEATELEARIADFNDILA 477

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE------PI 520
           S  +Q   I  E+  + + F        RRT        D +       E+         
Sbjct: 478 SPARQRTIIRDELTGIVDRFGD-----DRRTQILHGFDGDVSIEDLIAEEEMVITVTRDG 532

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            +  +     RS       +     +  D ++      T   +L  +  G+ Y   A  +
Sbjct: 533 YIKRTRSDNYRSQHRGGKGVKGAQLRADDVVEHFFVTTTHHWLLFFTNKGRVYRSKAYEV 592

Query: 581 LSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANT 635
                  +   +  L+ L  +++I              L++ +  G        E   N 
Sbjct: 593 PEAGRDAKGQHVANLLALQPDEEIAQILDIRDYSVATYLVLATRNGLVKKTRLDEYDTNR 652

Query: 636 RKGKTFLKVSSE-------------EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IP 679
           + G   +K+  +             +++   + V  GD + ++      L FS     + 
Sbjct: 653 QGGVIAIKLRGQVSDEADETEQGGADELVSALLVDEGDDILLISRLGMSLRFSATDNALR 712

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R   GV+   +++G           +           Y +        +  RGG+G 
Sbjct: 713 PMGRSTSGVKGMDFREGDSLLSASVAKDDEF-VFVVTEGGYAKRTAVTEYRMQNRGGLGI 771

Query: 739 LVPKGFPRSGKFLS 752
            V +     G    
Sbjct: 772 KVARLTDDRGVLAG 785



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 6/155 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           D ILL+S  G +    A +      G   +    +D      +++A V      + VV+ 
Sbjct: 690 DDILLISRLGMSLRFSATDNALRPMGRSTSGVKGMDFREGDSLLSASVAKDDEFVFVVTE 749

Query: 620 KGNAFIVEESEIIANTRKG--KTFLKVSSEEKMK--LVVKVTGDHVAVVGENRKLLIFSI 675
            G A     +E     R G      +++ +  +    ++   GD V VV  + K++  ++
Sbjct: 750 GGYAKRTAVTEYRMQNRGGLGIKVARLTDDRGVLAGGMMVSEGDEVLVVLASGKVVRSAV 809

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            ++P   R   GV             I       L
Sbjct: 810 AEVPAKGRDTMGVVFARAGGDDRIIAIARNAERNL 844


>gi|325578620|ref|ZP_08148720.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159856|gb|EGC71986.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 751

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 279/757 (36%), Positives = 441/757 (58%), Gaps = 25/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN   +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSN---INYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNAAAKFKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VDF+  ++    EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKISEILLSELGQGTVDFQPNFDGTLEEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +AA+ L+DNP++ ++ +L  I GPDFPT   I+  ++ I + Y 
Sbjct: 178 VGMATDIPPHNINEVADAAVMLLDNPKVGLDDVLNIIQGPDFPTEAEIISPKDDIRKMYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P++EDIRDE
Sbjct: 238 TGRGSIKMRATWHKEDGE-----IIISALPHQSSPSKIIAQIAEQMTAKKLPMVEDIRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +   RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  +L 
Sbjct: 293 ADYENPVRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLQVLT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR   R+  +  R+ IL GL+IA+LNIDE+I IIR ED+PK V+++RF+
Sbjct: 353 EWLTFRRTTVTRRLQHRLDKVLARLHILDGLMIAFLNIDEVIEIIRTEDEPKQVLMARFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AILNLRLR L KLEE+Q+++E D L  E+  ++ +L S ++    I  EI+E 
Sbjct: 413 LSDEQAEAILNLRLRHLAKLEEHQLQAEKDKLEEERSNLELILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++       R +   E   A KA  +  M   EP+TV++S  GW+R  K H +D + 
Sbjct: 473 AKKYASP-----RMSQLVEREEA-KAISESEMTPAEPVTVILSEMGWVRCAKGHDIDPAG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD         +   ++ + + G++Y L   +L S R  GE +   + L     I
Sbjct: 527 LSYKAGDKYLAHACGKSNQPVIFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+    K++     
Sbjct: 587 EQVIMEPEKQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPEKLSESASL 646

Query: 663 VV--GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDS 714
           +V      ++LIF +  +P +S+GKG ++ S      K      V  F I E  +    S
Sbjct: 647 LVSLTSAGRMLIFPVRDLPALSKGKGNKIISIPAANAKARSELLVKLFLISEQASLEFHS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             R       DL  +  +RG  GS +P+G   +   +
Sbjct: 707 GKRKITLKPEDLQKFRAERGRKGSQLPRGLHSNVDIV 743


>gi|145637576|ref|ZP_01793233.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittHH]
 gi|145269262|gb|EDK09208.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittHH]
          Length = 747

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 274/749 (36%), Positives = 434/749 (57%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRAIWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLD 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR ED PK  +++RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRQEDDPKAELMARFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILESERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 ASP-----RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 651 TSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRAERGRKGSTLPRGLHTN 739


>gi|114570423|ref|YP_757103.1| DNA gyrase subunit A [Maricaulis maris MCS10]
 gi|114340885|gb|ABI66165.1| DNA gyrase subunit A [Maricaulis maris MCS10]
          Length = 946

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 257/769 (33%), Positives = 392/769 (50%), Gaps = 61/769 (7%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G DN       + + +  +++   ++  YL YA+S I  RAIPD RDG KPVHRRI++ M
Sbjct: 18  GADNTGGQPPALPDGIGNIAIEDEMKSSYLDYAMSVIVSRAIPDARDGLKPVHRRILYTM 77

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E G     +++K A  VG+V+G+ HPHGDQ+VYDSLVRLAQ +  R PLI GQGNFG++
Sbjct: 78  HENGQTHEKSYRKCATAVGDVMGRYHPHGDQAVYDSLVRLAQDWSMRVPLIDGQGNFGSV 137

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AAYRYTEARM +VA+ +L  +D+D V+F D Y+ E  EPVV P+++PNLL NG  
Sbjct: 138 DGDPPAAYRYTEARMQKVAQSLLADIDKDTVNFVDNYSAERQEPVVLPARYPNLLVNGAG 197

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT++P HN+ E+ +  LAL++NP ++  +LL+YI GPDFPTGG ++  R     
Sbjct: 198 GIAVGMATNVPPHNLGEVIDGTLALLENPSLTEGELLDYIPGPDFPTGG-LILGRTGARN 256

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +   GRG   +R+R  +EEV +    I+V EIPYQV K+ +IEKIA+L+  K+I  + D+
Sbjct: 257 AVLTGRGSIVMRSRTSIEEVRKDRMAIIVHEIPYQVNKASMIEKIADLVRDKKIEGIADL 316

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R  + D+++  +F  S M+T F  NM  L  G  PQ++    IL
Sbjct: 317 RDESDRNGMRVVIELKRDANADVILNQLFRWSPMQTSFGANMLSLV-GGRPQLLGALDIL 375

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           KE+L  R EV+ RR+ F +     R  ++ GL +A  NIDE+IA+IR    P        
Sbjct: 376 KEFLRFREEVVARRAKFELNKARDRAHVIIGLALAVANIDEVIALIRKAPNPATAREQLM 435

Query: 422 S-----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELD 452
           +                             LTE Q  AIL LRL  L  L   ++ +E  
Sbjct: 436 ARDWPAMDVAPLVELVADPRSMLRDDNTLRLTEEQARAILELRLNRLTGLGREELGNEAK 495

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            L  +   +  LL S ++  + I  E+ EV+E ++       RR+   E   A+     +
Sbjct: 496 TLADQIADLLDLLRSRQRVLDIIRDELTEVRENYATP-----RRS---EFVDAELDFEDE 547

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I ++ + V +++ G+ +          +      S +  K+ D +     A T   +L
Sbjct: 548 DLIPRDEMVVTVTHGGYAKRTALSDYRAQRRGGKGRSGMATKDEDFIATLFVASTHAPLL 607

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S  G  Y      L   +    G+A+  L+ L   + I +               ++ 
Sbjct: 608 FFSNRGMVYKTKTWRLPLGAPNTRGKALINLLPLEQGETITSIMALPEDESTWADMNVMF 667

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            ++KG     + S+ +   R GK  +K+   ++++  VV  T  D V +     + + F 
Sbjct: 668 ATNKGTVRRNKLSDFVQVNRNGKIAMKLEEEDDQIVNVVLCTEQDDVFLTTHKGRAIRFP 727

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
              +     R   GVR     +G   ++I   I   +       R+Y +
Sbjct: 728 ATDVRVFAGRNSVGVRGIRLAEGD--ELISMAILHHIDVTSPEARAYMK 774



 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 4/97 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +   LL V+S G        +     R   G     +  +  +     V   D +  V +
Sbjct: 817 AEEFLLTVASDGMGKRSSAYDFRVMGRGNNGVAATDIKRDIPLSASFPVEDADQIMAVTD 876

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +L+ F +D +   SR  +GVRL    +G     + 
Sbjct: 877 GGQLIRFPVDTVRIASRSSRGVRLIRLNEGENVVAVV 913



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/250 (9%), Positives = 54/250 (21%), Gaps = 64/250 (25%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 ++  +  G        + +    +G+    L     +  IV   +      + +
Sbjct: 659 TWADMNVMFATNKGTVRRNKLSDFVQVNRNGKIAMKLE--EEDDQIVNVVLCTEQDDVFL 716

Query: 617 VSSKGNAFIVEESE---IIANTRKGKTFLKVSSEEKMKLVVKVT---------------- 657
            + KG A     ++          G   ++++  +++  +  +                 
Sbjct: 717 TTHKGRAIRFPATDVRVFAGRNSVGVRGIRLAEGDELISMAILHHIDVTSPEARAYMKHA 776

Query: 658 -------GDH----------------------------------VAVVGENRKLLIFSID 676
                  GD                                   +  V  +      S  
Sbjct: 777 TAMRRALGDDEEIETVNTDGDEDGDDEAALSTERLAELGAAEEFLLTVASDGMGKRSSAY 836

Query: 677 QIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
               M RG  GV     K   I     F + +    +                 +  R  
Sbjct: 837 DFRVMGRGNNGVAATDIK-RDIPLSASFPVEDADQIMAVTDGGQLIRFPVDTVRIASRSS 895

Query: 736 VGSLVPKGFP 745
            G  + +   
Sbjct: 896 RGVRLIRLNE 905



 Score = 42.5 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 9/37 (24%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I      +      Y +          +RGG G    
Sbjct: 550 IPRDEMVVTVTHGGYAKRTALSDYRAQRRGGKGRSGM 586



 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           + +L +++DG      A +          +    D+  +  +  +F  +   +++ V+  
Sbjct: 819 EFLLTVASDGMGKRSSAYDFRVMGRGNNGVAAT-DIKRDIPLSASFPVEDADQIMAVTDG 877

Query: 621 GNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           G           I + + +G   ++++  E +  VV++  
Sbjct: 878 GQLIRFPVDTVRIASRSSRGVRLIRLNEGENVVAVVRIQD 917


>gi|254440269|ref|ZP_05053763.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307]
 gi|198255715|gb|EDY80029.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307]
          Length = 921

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/852 (29%), Positives = 398/852 (46%), Gaps = 112/852 (13%)

Query: 4   DNISNSNTLVEENVK----AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           +   N+  +  E        +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++
Sbjct: 6   EAPENTGEMPPERPVYDGPQISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILY 65

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM E G     A++KSAR VG+V+GK HPHGD ++YD+L R+AQ F    PL+ GQGNFG
Sbjct: 66  AMYEAGNTHDKAYRKSARAVGDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFG 125

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD+ AA RYTE RM + A  +L  +D+D VDF+D Y+ +D EP V PS+FPN+L NG
Sbjct: 126 SMDGDNPAAMRYTEVRMDKPAAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPNMLVNG 185

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E  +A L LI+NP+++ E L+EYI GPDFPTGGI++  R   
Sbjct: 186 AGGIAVGMATNIPPHNLGEAIDACLGLIENPDLTSEDLIEYIPGPDFPTGGIML-GRAGA 244

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG    RA+   EE+ +  + I+++EIPYQV KS +I++IAE    K+I  + 
Sbjct: 245 RKAYLEGRGSVITRAKTHTEEIRKDRFAIIISEIPYQVNKSTMIDRIAEAARDKKIEGIS 304

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            ++DES  +   V+    R    ++++  +F  + M+T F  NM  L+ G  P+ + L  
Sbjct: 305 HVQDESDRNGVRVVIELKRDATAEVVLNQLFRFTPMQTYFGCNMLALN-GGRPETLTLRR 363

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------- 412
            L  +L  R +V+ RR++F +     R  +L GL +A  N+DE++A IR           
Sbjct: 364 FLTSFLDFREDVVIRRTAFELNKARDRAHVLCGLAVAVSNVDEVVATIRASADAPSARAA 423

Query: 413 ----------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         ++L+E Q  AIL LRL+ L ++   ++  E
Sbjct: 424 LMTRAWPAEEILPFILLIDDPTHPANEDGTYNLSEIQARAILELRLQRLTQIGVKEVTDE 483

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           L+ L  + ++  ++L S ++    I  E+ E K +F+       RRT   + S   +   
Sbjct: 484 LEELAKKIKEYLAILASRERIMQIIRDELAECKTLFAVP-----RRTQIVDWSGDME--- 535

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +IE + + V ++  G+I+          K     +S    KE D +     A+T  +
Sbjct: 536 DEDLIESQDMVVTVTETGYIKRTALVDFRAQKRGGKGVSGGSLKEDDVVTTLFVANTHTQ 595

Query: 563 ILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKL 614
           +L  +TDG  Y L    L        G+AI  ++ +     I      D         ++
Sbjct: 596 LLFFTTDGMVYKLKTWRLPQGSRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQI 655

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVT-GDHVAVVGENRKL 670
           +  +S G       S+     R GK  +K    ++  ++      +  D V +V  + + 
Sbjct: 656 VFATSAGTVRRNRLSDFTNVMRNGKIAMKFEGENAGVQLINARICSADDDVMLVTNSGRA 715

Query: 671 LIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVICFK------------------------ 704
           + F+   +    SR   GVR    K       +                           
Sbjct: 716 IRFASTDVRVFNSRASLGVRGIKLKGDDKIVSMSVIRHFKAEADERAAYLKMRRAMAGLA 775

Query: 705 -----------------------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                                         +        +  +     L  RGG+G    
Sbjct: 776 DDAEIEDEDVPAGNITQERYAEMSAAENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAM 835

Query: 742 KGFPRSGKFLSS 753
               R G+ ++S
Sbjct: 836 DKAMRGGEIVAS 847



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/106 (11%), Positives = 35/106 (33%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L +++ G+  +    +     R G     +       ++     V   D + +  
Sbjct: 801 AENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAMDKAMRGGEIVASFPVERDDQIMLAT 860

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
              + +   ++ I   SR   GV++ +     I   + +   +   
Sbjct: 861 SKGQSIRVPVEGISFRSRSAGGVKVFNTGKNEIVVSVAYIADQADE 906



 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++  G      + +       G  +  +       +IV +F  +   ++++ +SKG + 
Sbjct: 807 TITAGGSGKLSSSHDYPLRGRGGMGVTAMDKAMRGGEIVASFPVERDDQIMLATSKGQSI 866

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
            V    I   +R   G         E +  V  +   
Sbjct: 867 RVPVEGISFRSRSAGGVKVFNTGKNEIVVSVAYIADQ 903


>gi|86281831|gb|ABC90894.1| DNA gyrase subunit A protein [Rhizobium etli CFN 42]
          Length = 908

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 236/823 (28%), Positives = 385/823 (46%), Gaps = 115/823 (13%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+GK HPHG+ ++
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKYHPHGNAAI 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+ + A  +L  +D++ VDF
Sbjct: 61  YDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLDDLDKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           RD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +  +ALI++P I +
Sbjct: 121 RDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCIALINDPAIEL 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R    +E +      I++TEIP
Sbjct: 181 PELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVATIEPMRGDREQIIITEIP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+ +IEK+AEL+  KRI  + D+RDES      V+    R  + ++++  ++  + 
Sbjct: 240 YQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTP 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+ F ++    R  +L GL 
Sbjct: 300 LQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLA 358

Query: 395 IAYLNIDEIIAIIRNEDK-----------------------------PKPVMVSRFSLTE 425
           IA  NIDE+I +IR                                  +      ++L+E
Sbjct: 359 IAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINDDLTYNLSE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL LRL  L  L   +I  EL+ +  E      +L+S  +    +  E+  V++ 
Sbjct: 419 EQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELSAVRDE 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F        RRT   +          + +I +E + V +S+ G+I+          +   
Sbjct: 479 FGTP-----RRTEIVDGGLEMD---DEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
              S +  ++ D +      +T   +L  S+ G  Y      L   +    G+A+  ++ 
Sbjct: 531 KGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLP 590

Query: 596 LNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEE 648
           L   + I T               ++  +++G     + S+ +   R GK  +K+    +
Sbjct: 591 LEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGD 650

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVICFK- 704
           ++  V   T  D V +     + + FS+D +     R   GVR  +  +G     +    
Sbjct: 651 EILSVETCTDRDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIVG 710

Query: 705 ---------------------------------------------------ICEGLTWID 713
                                                                     + 
Sbjct: 711 HVDAEPWERAAYLKRSAAERRAIGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVLT 770

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLSS 753
            + + + +  +     +  RGG G        ++   G+ +++
Sbjct: 771 VSEKGFGKRSSSYDFRISGRGGKGIRATDTS-KTGEIGELVAA 812



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 8/109 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        +   + R GK        K     ++     V  GD + +V
Sbjct: 765 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 824

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDVICFKICEGLTW 711
            +  +L+   +  I   SR  KGV + S  KD  +  V      E    
Sbjct: 825 SDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISEPEEDDT 873


>gi|226321065|ref|ZP_03796607.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805]
 gi|226233475|gb|EEH32214.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805]
          Length = 810

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 257/760 (33%), Positives = 420/760 (55%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AF
Sbjct: 6   NKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYT
Sbjct: 66  KKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++ 
Sbjct: 126 EAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMA 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +
Sbjct: 186 PHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   +
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP ++M  ++  ++ +  F +N   L    +P+ + L+ +L E++ HR+ ++
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALV-NGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++       K  +VS F L+E Q +
Sbjct: 364 ERRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVSSFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           ++L++RL+ L  LE ++++ E + LL+  +  + +L +  +  N I  E   +   F   
Sbjct: 424 SVLDMRLQKLTALEIFKLEEEFNILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    +++KE I V+++ +G+++ L  +           LS
Sbjct: 484 -----RRTKII-YDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHN 599
           +    +GD + IAL  +T D + ++S +GK Y + A  +       +   +   I+L   
Sbjct: 538 SFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQ 597

Query: 600 QDIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+T            LL+ ++ G     E ++  A   +G   +K++ ++ +     V
Sbjct: 598 EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIV 657

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             D  V  + +     IF+   +   +RG +GV     K+G +  V    + E    +  
Sbjct: 658 FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLSVKENPYLLIV 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
           +   Y +  N       KRG  G    K   +  G  + +
Sbjct: 717 SENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 7/173 (4%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S  +  +   + D +  A      ++++ LS  G A+   + ++       + +  +  L
Sbjct: 637 SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM-KL 695

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MK 651
                 V          LL+VS  G    +  S+I    R    +      +K     + 
Sbjct: 696 KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVD 755

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +     D + +V +  K L     ++ E  +  +G+++    +  +  V  F
Sbjct: 756 AIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSVSKF 808


>gi|254797277|ref|YP_003082119.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois]
 gi|254590518|gb|ACT69880.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois]
          Length = 869

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 239/798 (29%), Positives = 399/798 (50%), Gaps = 64/798 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V+L   L+  YL+YA+S I  RAIPD+RDG KPVHRRI+++M+E+   +   ++KSA
Sbjct: 4   IIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R++GEVIGK HPHGD ++YD+LVR+AQ F    PLI GQGNFG+IDGD AAA RYTE R+
Sbjct: 64  RVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +++ +L  + E++VDFR  Y+  ++EPVV P+KFPN+L NGT+G+AVGMAT++P+HN+
Sbjct: 124 EYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ EA    ++N  ++ ++LL+ I GPDFPTGG ++   E I  S+  G+G   +R++ 
Sbjct: 184 SEVIEACKLYLENNNVTTDELLKVIKGPDFPTGG-LIIGEEGIKASFETGKGSIIIRSKT 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE       I+V E+PYQV K++LIE IA L+  KR+  + D+RDES ++   V+   
Sbjct: 243 HFEET-ETRKAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIEL 301

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++  +F ++ ++T +  NM +L   R P +M L  IL  ++AHR+EV+ RR+
Sbjct: 302 KRGASFEVVLNQLFQMTQLQTSYSTNMMLLDNMR-PTLMSLRDILAAFIAHRKEVISRRT 360

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------- 417
            FR+     +  +L  L +A LNIDE++ I+++    +  +                   
Sbjct: 361 EFRLAKAREKANVLVALYVAILNIDEVVRILKSSGDNETAVKALCAKHWTIDEELELLVE 420

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      + L+  Q  AIL ++++ +   E+ Q+ +E+   +   ++  S+L S  
Sbjct: 421 TISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGSEA 480

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ-AMIEKEPITVVISNRG 528
              N I  E+ E+K  + ++      +      +  D    +Q  +       +      
Sbjct: 481 VLTNVIVQELNEIKAKYPQARKSIILKNVNAVYAEEDLIEREQVVVTATYSGYIKRVQIS 540

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
             R  +       A + K  D L       T D IL  S+ GK Y L A  L     +  
Sbjct: 541 NYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSKGKVYKLKAYKLPIGEPQSR 600

Query: 587 GEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G A+  + DL  ++ I +           L+ ++++G       S+       GK  +K+
Sbjct: 601 GRALVNIFDLADDESITSILPLKSSDAENLIFLTAQGKVKRNSMSDFAYVPANGKVAIKL 660

Query: 645 SSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVI 701
           +  + +  V     +  + +   + K + F ++ +  + SR   GV+  +      +  +
Sbjct: 661 NDNDALISVKTAQNEDCIFISTRDGKCIRFLVEDLRVLKSRSSEGVKAITLGKDDSAISL 720

Query: 702 CF--------------------------KICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
                                       +  E    +      Y +  +     +  RGG
Sbjct: 721 SILNRRILSPEDKAEYMKTKFFERIQNPENHEEQFVLTVTENGYGKITSSYEYRITNRGG 780

Query: 736 VGSLVPKGFPRSGKFLSS 753
           VG +      R+GK +SS
Sbjct: 781 VGIINISTSERNGKVVSS 798



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 82/273 (30%), Gaps = 40/273 (14%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSH 536
           +++  K    +    GR      +++  +  T             + ++ +G ++     
Sbjct: 586 KLKAYKLPIGEPQSRGRALVNIFDLADDESITSILPLKSSDAENLIFLTAQGKVKRNSMS 645

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                      A+   + D+L     A   D I + + DGK       +L   +      
Sbjct: 646 DFAYVPANGKVAIKLNDNDALISVKTAQNEDCIFISTRDGKCIRFLVEDLRVLKSRSSEG 705

Query: 591 QLLIDLNHNQDIVTAFVYD---------------------------STCKLLVVSSKGNA 623
              I L  +   ++  + +                               +L V+  G  
Sbjct: 706 VKAITLGKDDSAISLSILNRRILSPEDKAEYMKTKFFERIQNPENHEEQFVLTVTENGYG 765

Query: 624 FIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
            I    E     R G   + +     + + +        +H+ +V    +++      IP
Sbjct: 766 KITSSYEYRITNRGGVGIINISTSERNGKVVSSFKVTLSNHIMLVTNRGQVIRIEASNIP 825

Query: 680 EMSR-GKGVRLQSYK-DGGISDVICFKICEGLT 710
            + R  +GVRL S + +  ++ V   +  E   
Sbjct: 826 VLGRNTQGVRLFSIRAEERVASVTEVEEVEDDD 858


>gi|15594780|ref|NP_212569.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31]
 gi|216264751|ref|ZP_03436743.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a]
 gi|218249915|ref|YP_002374946.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7]
 gi|223888797|ref|ZP_03623388.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b]
 gi|226321744|ref|ZP_03797270.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26]
 gi|3913797|sp|O51396|GYRA_BORBU RecName: Full=DNA gyrase subunit A
 gi|2688338|gb|AAC66803.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31]
 gi|215981224|gb|EEC22031.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a]
 gi|218165103|gb|ACK75164.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7]
 gi|223885613|gb|EEF56712.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b]
 gi|226232933|gb|EEH31686.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26]
 gi|312147746|gb|ADQ30405.1| DNA gyrase, A subunit [Borrelia burgdorferi JD1]
          Length = 810

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 257/760 (33%), Positives = 421/760 (55%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AF
Sbjct: 6   NKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYT
Sbjct: 66  KKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++ 
Sbjct: 126 EAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMA 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +
Sbjct: 186 PHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   +
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP ++M  ++  ++ +  F +N   L    +P+ + L+ +L E++ HR+ ++
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALV-NGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++       +  +VS F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDARERLVSNFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           ++L++RL+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E   +   F   
Sbjct: 424 SVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    +++KE I V+++ +G+++ L  +           LS
Sbjct: 484 -----RRTKII-YDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHN 599
           +    +GD + IAL  +T D + ++S +GK Y + A  +       +   +   I+L   
Sbjct: 538 SFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQ 597

Query: 600 QDIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+T            LL+ ++ G     E ++  A   +G   +K++ ++ +     V
Sbjct: 598 EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIV 657

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             D  V  + +     IF+   +   +RG +GV     K+G +  V    + E    +  
Sbjct: 658 FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLSVKENPYLLIV 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
           +   Y +  N       KRG  G    K   +  G  + +
Sbjct: 717 SENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 7/173 (4%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S  +  +   + D +  A      ++++ LS  G A+   + ++       + +  +  L
Sbjct: 637 SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM-KL 695

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MK 651
                 V          LL+VS  G    +  S+I    R    +      +K     + 
Sbjct: 696 KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVD 755

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +     D + +V +  K L     ++ E  +  +G+++    +  +  V  F
Sbjct: 756 AIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSVSKF 808


>gi|195942015|ref|ZP_03087397.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi 80a]
          Length = 810

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 258/760 (33%), Positives = 421/760 (55%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AF
Sbjct: 6   NKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYT
Sbjct: 66  KKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++ 
Sbjct: 126 EAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMA 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +
Sbjct: 186 PHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   +
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP ++M  ++  ++ +  F +N   L    +P+ + L+ +L E++ HR+ ++
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALV-NGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++       K  +VS F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKEKLVSNFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           ++L++RL+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E   +   F   
Sbjct: 424 SVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    +++KE I V+++ +G+++ L  +           LS
Sbjct: 484 -----RRTKII-YDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHN 599
           +    +GD + IAL  +T D + ++S +GK Y + A  +       +   +   I+L   
Sbjct: 538 SFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQ 597

Query: 600 QDIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+T            LL+ ++ G     E ++  A   +G   +K++ ++ +     V
Sbjct: 598 EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIV 657

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             D  V  + +     IF+   +   +RG +GV     K+G +  V    + E    +  
Sbjct: 658 FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLSVKENPYLLIV 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
           +   Y +  N       KRG  G    K   +  G  + +
Sbjct: 717 SENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 7/173 (4%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S  +  +   + D +  A      ++++ LS  G A+   + ++       + +  +  L
Sbjct: 637 SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM-KL 695

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MK 651
                 V          LL+VS  G    +  S+I    R    +      +K     + 
Sbjct: 696 KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVD 755

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +     D + +V +  K L     ++ E  +  +G+++    +  +  V  F
Sbjct: 756 AIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSVSKF 808


>gi|221218140|ref|ZP_03589606.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a]
 gi|224533599|ref|ZP_03674188.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a]
 gi|225548621|ref|ZP_03769668.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a]
 gi|225549647|ref|ZP_03770613.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a]
 gi|221192088|gb|EEE18309.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a]
 gi|224513272|gb|EEF83634.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a]
 gi|225369924|gb|EEG99371.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a]
 gi|225370651|gb|EEH00087.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a]
          Length = 810

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 258/760 (33%), Positives = 421/760 (55%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AF
Sbjct: 6   NKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYT
Sbjct: 66  KKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++ 
Sbjct: 126 EAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMA 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +
Sbjct: 186 PHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   +
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP ++M  ++  ++ +  F +N   L    +P+ + L+ +L E++ HR+ ++
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALV-NGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++       K  +VS F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVSNFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           ++L++RL+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E   +   F   
Sbjct: 424 SVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    +++KE I V+++ +G+++ L  +           LS
Sbjct: 484 -----RRTKII-YDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHN 599
           +    +GD + IAL  +T D + ++S +GK Y + A  +       +   +   I+L   
Sbjct: 538 SFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQ 597

Query: 600 QDIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+T            LL+ ++ G     E ++  A   +G   +K++ ++ +     V
Sbjct: 598 EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIV 657

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             D  V  + +     IF+   +   +RG +GV     K+G +  V    + E    +  
Sbjct: 658 FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLSVKENPYLLIV 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
           +   Y +  N       KRG  G    K   +  G  + +
Sbjct: 717 SENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 7/173 (4%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S  +  +   + D +  A      ++++ LS  G A+   + ++       + +  +  L
Sbjct: 637 SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM-KL 695

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MK 651
                 V          LL+VS  G    +  S+I    R    +      +K     + 
Sbjct: 696 KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVD 755

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +     D + +V +  K L     ++ E  +  +G+++    +  +  V  F
Sbjct: 756 AIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSVSKF 808


>gi|329298427|ref|ZP_08255763.1| DNA topoisomerase IV subunit A [Plautia stali symbiont]
          Length = 757

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 270/756 (35%), Positives = 446/756 (58%), Gaps = 24/756 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + ++++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEMIQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELGQGTVDYIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ EAA+ LID P  ++++LLE + GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNLREVAEAAVRLIDKPNTTLDELLEIVQGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +
Sbjct: 242 SIRQRAVWKKEDGE-----VVITALPHQVSGARVLEQIASQMRNKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P +  +D D +M  +F  +D++  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPHSNRVDLDQVMNHLFATTDLQKSYRVNLNMIGLDNRPAVKNLLEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ + RR +  ++ + RR+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++SRF ++E 
Sbjct: 357 YRRDTVTRRLNHSLERVLRRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMSRFDISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E+    + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQAELEKERDQLQAILASDRKMSNLLKKELLADSQTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A   +  + +  + P+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 DD-----DRRSPLHEREEAKALSENELVSAE-PVTIVLSQMGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   +  + + G++YTL   +L S RG GE +   +       I    
Sbjct: 531 AGDSYRAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAV-V 664
           +     KLL+ S  G  FI   +++++  R GK  L +    ++   + V +GD + + +
Sbjct: 591 MEADDQKLLMASDAGYGFICTFADLVSRNRAGKALLTLPENAEVMAPLAVHSGDDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI------CFKICEGLTWIDSAGRS 718
            +  ++L+F +  +P+MS+GKG ++ S      +  +                I    R 
Sbjct: 651 TQAGRMLMFPVADLPQMSKGKGNKIISIPSADAAAGVDKLQWLLILPPGSSITIYVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF-LSS 753
               + DL     +RG  GS+  +G  R     +++
Sbjct: 711 LIMRDEDLQKVRAERGRRGSVS-RGLQRIDSVEVNA 745


>gi|225552441|ref|ZP_03773381.1| DNA gyrase, A subunit [Borrelia sp. SV1]
 gi|225371439|gb|EEH00869.1| DNA gyrase, A subunit [Borrelia sp. SV1]
          Length = 810

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/760 (33%), Positives = 419/760 (55%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AF
Sbjct: 6   NKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYT
Sbjct: 66  KKAGRIVGDVLGKYHPHGDQSIYDALVRLAQNFSLRYPVIRGQGNFGSIDGDPPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++ 
Sbjct: 126 EAKMEKITEYIVRDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMA 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EIC+A + ++DN   S+  LL+ + GPDFPT G IV + ++++++Y+ G+G   +
Sbjct: 186 PHNLREICDAIVYMLDNENASVFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   +
Sbjct: 245 RARYHIEERAEDKNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP ++M  ++  ++ +  F +N   L    +P+ + L+ +L E++ HR+ ++
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALV-NGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++       K  +V  F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVLNFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           ++L+++L+ L  LE ++++ EL  LL+  +  + +L +  +  N I  E   +   F   
Sbjct: 424 SVLDMKLQKLTALEIFKLEDELKVLLSLIKDYEDILLNPVRIINIIREETINLGLKFGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    +++KE I V+++ +G+++ L  +           LS
Sbjct: 484 -----RRTKII-YDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHN 599
           +    +GD + IAL  +T D + ++S +GK Y + A  +       +   +   ++L   
Sbjct: 538 SFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELLNLGDQ 597

Query: 600 QDIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+T            LL+ ++ G     E ++  A   +G   +K++ ++ +     V
Sbjct: 598 EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIV 657

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             D  V  + +     IF+   +   +RG +GV     K+G +  V    + E    +  
Sbjct: 658 FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLL-VKVLAVRENPYLLIV 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
           +   Y +  N       KRG  G    K   +  G  + +
Sbjct: 717 SENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 7/173 (4%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S  +  +   + D +  A      ++++ LS  G A+   + ++       + +  +  L
Sbjct: 637 SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM-KL 695

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MK 651
                +V          LL+VS  G    +  S+I    R    +      +K     + 
Sbjct: 696 KEGDLLVKVLAVRENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVD 755

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +     D + +V +  K L     ++ E  +  +G+++       +  V  F
Sbjct: 756 AIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDSDSLVSVSKF 808


>gi|270158444|ref|ZP_06187101.1| DNA topoisomerase IV subunit A [Legionella longbeachae D-4968]
 gi|289166718|ref|YP_003456856.1| DNA topoisomerase IV, A subunit [Legionella longbeachae NSW150]
 gi|269990469|gb|EEZ96723.1| DNA topoisomerase IV subunit A [Legionella longbeachae D-4968]
 gi|288859891|emb|CBJ13877.1| DNA topoisomerase IV, A subunit [Legionella longbeachae NSW150]
          Length = 753

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 266/737 (36%), Positives = 428/737 (58%), Gaps = 25/737 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +KKSAR VG+
Sbjct: 15  LAEFTEKAYLDYSMYVILDRALPHIADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGD 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVA 140
           V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   S AA RYTEAR+++ A
Sbjct: 75  VLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRYTEARLSRYA 134

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVGMA+ I  HN+ E+ 
Sbjct: 135 EVLLAELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDILPHNLTEVA 194

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            A + L+DNP   +  + +YI GPDFPT   I+   E+I   Y  G G  ++RA +    
Sbjct: 195 NACVYLLDNPHADLAAITQYIKGPDFPTEAEIITPPEAISAMYETGNGSIKMRAVY---- 250

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNR 318
             +    IV+T +PYQV  ++++E+IA  +  K++P++ED+RDES  +   R+V+ P++ 
Sbjct: 251 -NQEKQNIVITALPYQVSGAKVLEQIALQMQQKKLPMVEDLRDESDHEHPTRLVIVPRSN 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +D + LM  +F  +D+E  + +N N++ +   P+V  L  I+ EWL +R  V+ RR  +
Sbjct: 310 RVDIEGLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLVEIISEWLVYRISVVRRRLEY 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
           R+  +  R+ +L+GLLIAYLNIDE+IAIIR  ++PK  +++RF++++ Q +AIL ++LR 
Sbjct: 370 RLAKVLDRIHVLEGLLIAYLNIDEVIAIIREHEQPKQGLIARFNISDRQAEAILEMKLRH 429

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L KLEE +++ ELD L  E++ + ++L S ++    +  EI   ++ F        RR+ 
Sbjct: 430 LAKLEEIKLRGELDELCMERDNLQAILASEQRLKKLVKEEITNDRDEFGD-----VRRSP 484

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              V +  +A  ++ ++  EPITVV+S +GW+R+ K H ++   L FK GD  K    A 
Sbjct: 485 II-VRQESQALKEEDILPNEPITVVLSKKGWVRAAKGHDINGCELSFKAGDDFKAQATAR 543

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
           +  +IL   ++GK Y+LP   L S RG GE +   ++         A   ++   +L+ S
Sbjct: 544 SNQQILFFDSEGKVYSLPGHVLPSARGQGEPLTGKLNPAEGALFEAAVGGEADQSVLLAS 603

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGENRKLLIFSI 675
             G  FI +  ++    R GK  +K+     +     +       +A      +LLI S 
Sbjct: 604 DAGYGFIAKIGDLYVKNRNGKACIKLPETSHILPPRILPKHDELFIACATNAGRLLICST 663

Query: 676 DQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            +IPE+SRGKG +L S        ++  + D+      + LT   +  R +     DL  
Sbjct: 664 KEIPELSRGKGNKLISIPTAKVVSREEYVIDIQVLTADDTLTV-HAGKRHFTLKGADLEH 722

Query: 729 WLGKRGGVGSLVPKGFP 745
           + G+RG  G+ +P+G  
Sbjct: 723 YKGERGRRGNRLPRGLQ 739


>gi|242241010|ref|YP_002989191.1| DNA topoisomerase IV subunit A [Dickeya dadantii Ech703]
 gi|242133067|gb|ACS87369.1| DNA topoisomerase IV, A subunit [Dickeya dadantii Ech703]
          Length = 757

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 280/757 (36%), Positives = 456/757 (60%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---MTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LSASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  AA+ALIDNP+ +++ LL+++  PDFPT   I+ SR+ + + Y 
Sbjct: 178 VGMATDIPPHNVREVAAAAVALIDNPDATLDALLQHVQAPDFPTEAEIITSRDELRKMYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+       +V+T +P+QV  +R++E+IA  + AK++P+++D+RDE
Sbjct: 238 TGRGSVRMRAVWKKEDGS-----VVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+VL P++  +D D++M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVLVPRSNRIDLDMVMNHLFATTDLEKSYRINMNMIGLDGRPGVKGLQEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA RR+ + RR SFR+  + +R+ +L+GLL+A+LNIDE+I IIR+ED+PKPV+++RF 
Sbjct: 353 EWLAFRRDTVRRRLSFRLDKVLKRLHVLEGLLVAFLNIDEVIHIIRSEDEPKPVLMARFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +I+ E D L  E+++I  +L S ++  + +  EI+  
Sbjct: 413 LSDTQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQIQDILASERKMSSLLKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E + A KA  +  +   EP+T+V+S  GW+RS K H +D S 
Sbjct: 473 AKAYGD-----DRRSPLQERAEA-KAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD+ + A    +   ++ + + G++Y L    L S RG GE +   + L     +
Sbjct: 527 LNYKAGDNYRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGATV 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     +LL+ S  G  FI   S+++A  R GK  L +    K+   ++V+ D   
Sbjct: 587 EQVLMTADEQRLLLASDAGYGFICTFSDLVARNRVGKAVLALPDNAKVLPPLEVSHDDDL 646

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWID 713
           +  +    ++L+F +  +P++S+GKG ++ +         +  I  +        +T + 
Sbjct: 647 LLTITAAGRMLLFPVADLPQLSKGKGNKIVAIPAAQAASGEDRILWLQVISPRATVT-LH 705

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S  R Y     +L  +   RG  G+ +P+G  R  + 
Sbjct: 706 SGKRKYALRPEELQKFTASRGCKGTTLPRGLQRVDRV 742


>gi|50364822|ref|YP_053247.1| DNA gyrase subunit A [Mesoplasma florum L1]
 gi|50363378|gb|AAT75363.1| DNA gyrase subunit A [Mesoplasma florum L1]
          Length = 825

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 242/766 (31%), Positives = 393/766 (51%), Gaps = 32/766 (4%)

Query: 6   ISNSNTLVEENVKA-VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +S  N      +   + +   + + +L Y++S I  RA+PDL+DG KPVHRRII+AM+++
Sbjct: 1   MSEKNLEHNHGIIKGIDIAAEVRKDFLEYSMSVIVSRALPDLKDGLKPVHRRIIYAMNDL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+      KKSARIVGEVIGK HPHGD +VYDS+VR+AQ F  RYPL+ G GNFG+IDGD
Sbjct: 61  GITADKPHKKSARIVGEVIGKYHPHGDTAVYDSMVRMAQDFSYRYPLVDGHGNFGSIDGD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR+ +V+  I++ +D + V F D Y+  + EP      FPNLLANG  GIA
Sbjct: 121 GAAAMRYTEARLAKVSNFIIKDIDMNTVPFVDNYDASEREPAYLTGYFPNLLANGAMGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKL-LEYIIGPDFPTGGIIVESRESIVESY 243
           VGMATSIP HN++E+  A  A IDN +I+I+++   +I+GPDFPTG ++      + E Y
Sbjct: 181 VGMATSIPPHNLREVISAIHAFIDNKDITIDEILDNHIMGPDFPTGALMTNGIR-MREGY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG   +RA+  +EE  R +  I+ TEIPYQ  K++LIE+IAEL+  K++  + DIRD
Sbjct: 240 KTGRGAVTIRAKVALEENDRHARFII-TEIPYQTNKAKLIERIAELVKTKQLEGISDIRD 298

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   ++    R  +PD+++  ++  ++++T + LN+  L    +P ++ L  I+K 
Sbjct: 299 ESNYEGIRIVIELRRDSNPDVVLSKLYKFTNLQTTYSLNLLSL-HNNIPVLLDLKSIIKH 357

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---R 420
           ++  +  V+ +RS F    I++R  IL+ L  A  NID I+ I+RN  +     +     
Sbjct: 358 YVDFQINVIIKRSIFEKDKIEKRFHILEALDTALDNIDAIVNILRNSPESNEAKMKLTEA 417

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F   E Q  AIL++RL+ L  LE  +I+ E+  +    + +  L++   +Q N +  ++ 
Sbjct: 418 FGFDEEQNKAILDMRLQRLVGLERGKIQQEMAQIKERIDYLTLLISDETEQNNVLKNQLS 477

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           E+ E F  +    RR  T  E          + +I      +++S+ G+IR +      +
Sbjct: 478 EIAEKFGDN----RRTETIDE---GLMDIEDEELIPDVKTMILLSDEGYIRRVDPEEFRV 530

Query: 541 SAL-------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                     +    D + IA      D +L  +  GK +   A N+         + ++
Sbjct: 531 QKRGGRGVSVNSSNEDPIVIATMGKMRDWVLFFTNSGKVFRTKAYNIRQYSRTARGLPIV 590

Query: 594 IDLN---HNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
             LN       I          +    L  ++ KG     + S      + GK  + +  
Sbjct: 591 NFLNGLTAGDKITAILPLRNVKEKMNYLTFITEKGMIKKTDISLFDNINKNGKIAINLKE 650

Query: 647 EEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           ++++  V   TG+  + V  ++ K++    + +  +SR   GV+     +  +  V    
Sbjct: 651 DDQLVTVFATTGEDTIFVANKSGKVIRIQENIVRPLSRTASGVKAIKLDENDVV-VGAVT 709

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                     + +   +  N     +  R G G  V     ++G F
Sbjct: 710 SFGIENITTISSKGSFKKTNIDEYRISGRNGKGIKVMNLNEKTGDF 755


>gi|212633645|ref|YP_002310170.1| DNA topoisomerase IV subunit A [Shewanella piezotolerans WP3]
 gi|212555129|gb|ACJ27583.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3]
          Length = 755

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 268/757 (35%), Positives = 435/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + +R   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPMRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  + +L+E++ GPD+PT   I+     I + Y+
Sbjct: 181 VGMATDVPPHNAKELVGACVELLDNPKADLPRLMEFVPGPDYPTEAEIITPSADIAKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + +E     +  +V++ +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYTIE-----NGEVVISALPHQASSGKILEQIAAQMQAKKLPMVTDLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D +M  +F  +D+E  + +N+NVL +   PQV  L  +L 
Sbjct: 296 SDHESPVRMVIVPRSNRVDCDQMMAHLFATTDLEKSYRVNLNVLGLNGRPQVKGLRELLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  I  R+ IL  L+IA+LNIDE+I IIR  D PK  +++RF 
Sbjct: 356 EWLVFRMTTVKRRLEFRLDKILARLHILDALMIAFLNIDEVIEIIRFHDDPKAELMTRFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAIL+L+LR L KLEE++IKSE   L AE++K+  LL+S ++    I  E+ + 
Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKSEQSELEAERDKLQLLLSSERRMKTLIKKELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+    V    KA  +Q ++  E +TVV+S +GW+R  K H VD  +
Sbjct: 476 GEDYGD-----DRRSPLV-VRGESKALTEQELVPAESVTVVLSEKGWVRCAKGHEVDGKS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + T G+A+      L S R  GE I    +L     +
Sbjct: 530 LSYKAGDEFLCSAPGRSNQPSVFIDTSGRAFATETHTLPSARSQGEPITTRFNLAPGATM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D +   ++ S  G  FI    ++I+  + GK  L + +  K+ L  KV      
Sbjct: 590 EHVLLADESQCYILASDAGYGFIAANKDMISRNKAGKALLSLPANAKVLLPQKVDKSKAQ 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-ID 713
            +  +    ++L+FS+D +P++++GKG ++        K+     +    I E +   + 
Sbjct: 650 SILAITNEGRMLLFSLDALPQLTKGKGNKIIGIPTERAKNREELLIHLNVIPEDMPVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|307245439|ref|ZP_07527527.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254393|ref|ZP_07536231.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258852|ref|ZP_07540584.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853780|gb|EFM85997.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862692|gb|EFM94648.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867203|gb|EFM99059.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 748

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 264/746 (35%), Positives = 440/746 (58%), Gaps = 23/746 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAY 129
            +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAM 123

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT
Sbjct: 124 RYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMAT 183

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G 
Sbjct: 184 DIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGS 243

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++RA W  E+       IV+  +P+Q   S++IE+IA  +  K++P+++DIRDES  + 
Sbjct: 244 IKMRAVWKKEDGE-----IVILALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHEN 298

Query: 310 --RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
             RIV+ P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  
Sbjct: 299 PIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLQTILTEWLTF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR  + RR ++R+  I  R+ IL+GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q
Sbjct: 359 RRTTVTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AILNLRLR L KLEE++++ E   L  E++++   L S ++    I  EI+   + F+
Sbjct: 419 SEAILNLRLRHLAKLEEHELQEEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFA 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ 
Sbjct: 479 SP-----RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRA 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD      H  +   ++ L + G+AY L   +L S R  GE +   I L     +    +
Sbjct: 533 GDGYLAHAHGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLM 592

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVV 664
            +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    +  +
Sbjct: 593 ANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAM 652

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWIDSAG-RS 718
               ++L+F I ++P++S+GKG ++ +      K+G         +    + +  +G R 
Sbjct: 653 SSVGRMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFVSGKRK 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                +D+  + G+R   GS + +G 
Sbjct: 713 ITLKPSDIDNYRGERARKGSQLVRGL 738


>gi|312149537|gb|ADQ29608.1| DNA gyrase, A subunit [Borrelia burgdorferi N40]
          Length = 810

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/760 (34%), Positives = 421/760 (55%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AF
Sbjct: 6   NKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYT
Sbjct: 66  KKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++ 
Sbjct: 126 EAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMA 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +
Sbjct: 186 PHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   +
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP ++M  ++  ++ +  F +N   L    +P+ + L+ +L E++ HR+ ++
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALV-NGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDEII II++       K  +VS F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLVSNFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           ++L++RL+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E   +   F   
Sbjct: 424 SVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    +++KE I V+++ +G+++ L  +           LS
Sbjct: 484 -----RRTKII-YDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHN 599
           +    +GD + IAL  +T D + ++S +GK Y + A  +       +   +   I+L   
Sbjct: 538 SFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQ 597

Query: 600 QDIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+T            LL+ ++ G     E ++  A   +G   +K++ ++ +     V
Sbjct: 598 EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIV 657

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             D  V  + +     IF+   +   +RG +GV     K+G +  V    + E    +  
Sbjct: 658 FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLSVKENPYLLIV 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
           +   Y +  N       KRG  G    K   +  G  + +
Sbjct: 717 SENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 7/173 (4%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S  +  +   + D +  A      ++++ LS  G A+   + ++       + +  +  L
Sbjct: 637 SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM-KL 695

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MK 651
                 V          LL+VS  G    +  S+I    R    +      +K     + 
Sbjct: 696 KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVD 755

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +     D + +V +  K L     ++ E  +  +G+++    +  +  V  F
Sbjct: 756 AIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSVSKF 808


>gi|315225744|ref|ZP_07867532.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
 gi|315119876|gb|EFT83008.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
          Length = 922

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 222/784 (28%), Positives = 371/784 (47%), Gaps = 40/784 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +   L    +K++ L+  + E YLAYALS I ERA+PD+RDG KPVHRR+++AM + G 
Sbjct: 32  EDFGLLKGTRIKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGY 91

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D A
Sbjct: 92  RPDRGYNKCSRVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPA 151

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V PS+FPNLL NG++GIAVG
Sbjct: 152 AAMRYTECRMAPLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVG 211

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ +     +D+PE S E+LL      I GPDFPTG  I+   + I ++
Sbjct: 212 MATNIPPHNMREVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATIL-GHKGIEQA 270

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  + D+R
Sbjct: 271 YRTGRGLITMRAVVNTEEIN-GRLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMR 329

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE++    + ++    R   P +++ +++  + ++  F  NM  L    VP+ + LD  +
Sbjct: 330 DETSGRTGQRLVLVLKRDAVPKVILNNLYKHTQLQQTFGANMLALVD-GVPRTLSLDAFI 388

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + W++H+ EV+ RR+ +  +  + R  IL+G L A   I+E+IA+IR             
Sbjct: 389 RHWISHQLEVVDRRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLM 448

Query: 422 ---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + + Q DAIL ++LR L  LE  +I  E + L+ +    + +L   ++Q   +  E
Sbjct: 449 DLLDVDQVQADAILAMQLRRLAALERQKIIDEHEELMRKIADYNDILAKPERQRAIVGDE 508

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+ + +           +         A     +       +  +     R+      
Sbjct: 509 MDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVTVTHSGYIKRTKADEYRAQHRGGK 568

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +     +E D +       T + +L  + +G+ Y +    +  G    +   +  L+ L
Sbjct: 569 GIKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEGSRDSKGQHVANLLQL 628

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------- 646
             ++ I        YD    L++ +  G       +E  +  + G   +++         
Sbjct: 629 GPDEKIQQVLSIHDYDEAKYLVLATRSGKIKKTRLNEYDSTRQGGLIAVRLREIEGAFRT 688

Query: 647 ---------EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYK 693
                     +++         D + VV +    + FS D   +  M R   GV+   ++
Sbjct: 689 DEEGNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDETLRSMGRQTAGVQAMKFR 748

Query: 694 ----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               +  +  +           +      + +        L  R G G          G 
Sbjct: 749 GQAGEDLLLSMDVVPAESDSDLVVVTNEGFAKRTALSEYRLQGRNGYGVKAINLVEGRGS 808

Query: 750 FLSS 753
            + +
Sbjct: 809 LVGA 812


>gi|313664968|ref|YP_004046839.1| DNA gyrase, A subunit [Mycoplasma leachii PG50]
 gi|312949632|gb|ADR24228.1| DNA gyrase, A subunit [Mycoplasma leachii PG50]
          Length = 834

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 244/767 (31%), Positives = 390/767 (50%), Gaps = 31/767 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D +  +       +  + +   + + +L YA+S I  RA+PDL+DG KPVHRRII+AM++
Sbjct: 9   DFLDENQNHYHGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMND 68

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+      KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG+IDG
Sbjct: 69  LGITSDKPHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDG 128

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+ +++  +++ +D D V F D Y+  + EP       PNLL NGT GI
Sbjct: 129 DGAAAMRYTEARLAKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGI 188

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKL-LEYIIGPDFPTGGIIVESRESIVES 242
           AVGMATSIP HN++E+  A  A IDN +I+I+++   YI+GPDFPTG ++    + + E 
Sbjct: 189 AVGMATSIPPHNLKEVVSAINAYIDNNDITIDEILDNYILGPDFPTGALMTNGTK-MREG 247

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ GRG   +RA+   EE        VVTEIPYQ  K+++IEKIAEL+  K I  + DIR
Sbjct: 248 YKTGRGSVIIRAKIDFEENK-KHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIR 306

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   ++    +  +PD+++  ++  + +++ F +N+  L+      ++ L  I+K
Sbjct: 307 DESNYEGIRIIIELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLP-VLLDLKTIIK 365

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVS 419
            ++  +  V+ +RS F    + +R  IL+ L IA  N+D++I II+N          + +
Sbjct: 366 NYVEFQVNVIIKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSDEAKIQLTN 425

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +++  E Q  AIL++RL+ L  LE  +I  E+ N+      +D L+N+ ++Q N +  ++
Sbjct: 426 KYNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDLLINTKEEQDNVLKNQL 485

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E+ + F        RRT   +          + +I      +++S  G+IR +      
Sbjct: 486 NEIADKFGD-----NRRTELID--EELINIEDEELIPDLKWMILLSQEGYIRRINPDEFR 538

Query: 540 LSAL-------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +          + +  D + IA      D +L  +  GK Y     N+ S       + +
Sbjct: 539 IQKRGGRGVSVNVEPNDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPI 598

Query: 593 LIDLNH---NQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           +  LN       I       +       L  V+ KG     + SE     R GK  + + 
Sbjct: 599 VNFLNDLTSEDKITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLR 658

Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             +++  V   TG   + +  E+ K++      +   SR G GVR    +   +  V   
Sbjct: 659 ENDQLISVFATTGQDTIFIANESGKVIRIKESVVNPQSRVGSGVRALKLEANDVV-VGAI 717

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +       + +   +        +  R G G  V     R+GKF
Sbjct: 718 SSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKF 764


>gi|187918300|ref|YP_001883863.1| DNA gyrase subunit A [Borrelia hermsii DAH]
 gi|119861148|gb|AAX16943.1| DNA gyrase subunit A [Borrelia hermsii DAH]
          Length = 810

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/763 (31%), Positives = 411/763 (53%), Gaps = 28/763 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
               +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL   
Sbjct: 3   TEEDKEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRAD 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            AFKK+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F  RYP++ GQGNFG+IDGD  AA 
Sbjct: 63  KAFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVIGQGNFGSIDGDPPAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM +VAE +++ +D+  VDFR  Y++   EP V P+ FP LL NG+SGIAVGMAT
Sbjct: 123 RYTEARMARVAEELVRDIDKQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           ++  HN++EIC+A + ++D+  +S+  L+E + GPDFPT   I+ + ES++++Y  G+G 
Sbjct: 183 NMAPHNLKEICDAIVYMLDHDSVSVYDLIEIVKGPDFPTYAEIIYN-ESLIKAYTTGKGS 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RAR+ +EE       I++T+IPY V KS L+ KIA LI  +++  + DIRDES  + 
Sbjct: 242 VVIRARYHIEEKFEDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGVSDIRDESDREG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  DP ++M  ++  +++   F +N   L    +P+ + L  ++  ++ HR+
Sbjct: 302 IRIVLEIKKGFDPHVVMNLLYEYTELRKNFSINNLALV-NGIPKQLNLKELISAFIEHRK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           E++ RR  F ++    +  IL+GL I       + EII   R     K  ++  F+L+E 
Sbjct: 361 EIVRRRVEFDLKRAREKAHILEGLNIALRNIDRVIEIIRFARLVKDAKECIIKEFNLSEI 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q ++IL+++L+ L  +E  +++ E   LLA  +  + +LNS ++  N +  EI  +   F
Sbjct: 421 QANSILDMKLQKLTSIETEKLEEEFKILLALIKDYEDILNSPERVVNIVREEIINLSLKF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT           T    ++++E + V+++ +G+I+ +             
Sbjct: 481 GDE-----RRTKII-YDEEVLKTSMSDLMQRENVIVILTKQGFIKRILQDEYKLQGIGGK 534

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDL 596
            L +   ++ D + I L  +T D + ++S +GK Y + A      S    G+ ++ LI+L
Sbjct: 535 GLGSFDLQDRDQVNITLCVNTHDFLFMISNEGKLYVINAYGIKDTSRTSKGQNVRELINL 594

Query: 597 NHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              ++I+     +       LL+ ++ G    +E         +G   +K+   + +   
Sbjct: 595 GETEEILAIKNCNELSVDNYLLITTANGKIARIETEGFKTVKARGVIVIKLDDNDFVTSA 654

Query: 654 VKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTW 711
             V+ +  +  + +      F+ D I    RG +GV     ++G +  +    + +G   
Sbjct: 655 EIVSKNEKIICISKKGNAFAFNSDNIRLTHRGTQGVSGMKVREGDVL-IKALAVKQGSHL 713

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF-PRSGKFLSS 753
           +  +   Y +          KRG  G    K    ++G+ + +
Sbjct: 714 LVVSENGYGKRLEISKVTDLKRGATGYTCYKKSDEKAGEVVDA 756



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 7/172 (4%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             +  +   + D +  A      ++I+ +S  G A+     + +     G      + + 
Sbjct: 638 RGVIVIKLDDNDFVTSAEIVSKNEKIICISKKGNAFAFN-SDNIRLTHRGTQGVSGMKVR 696

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MKL 652
               ++ A        LLVVS  G    +E S++    R    +      ++     +  
Sbjct: 697 EGDVLIKALAVKQGSHLLVVSENGYGKRLEISKVTDLKRGATGYTCYKKSDEKAGEVVDA 756

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +  V  D + +V +  K+L   +D+I E  +  +G+++ S  +  +  V  F
Sbjct: 757 ITVVQDDEILLVSKGAKVLRTLVDKISEQGKDARGMQVLSLDEDKLISVSKF 808


>gi|89054985|ref|YP_510436.1| DNA gyrase subunit A [Jannaschia sp. CCS1]
 gi|88864534|gb|ABD55411.1| DNA gyrase A subunit [Jannaschia sp. CCS1]
          Length = 919

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 254/850 (29%), Positives = 395/850 (46%), Gaps = 111/850 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D +         ++    +   ++  +L YA+S I  RAIPDLRDG KPVHRRI+ AM
Sbjct: 11  GEDTLPERPEYSGPSI---DISAEMKTSFLDYAMSVIISRAIPDLRDGLKPVHRRILFAM 67

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E G     +++KSAR VG+V+G+ HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++
Sbjct: 68  HETGNTHEKSYRKSARPVGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 127

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD+ AA RYTE RM   A  +L+ +D+D VDF+D Y+ +  EP V P++FPN+L NG  
Sbjct: 128 DGDNPAAMRYTEVRMDAPAAYLLEDIDKDTVDFQDNYDGKQQEPSVLPARFPNMLVNGAG 187

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A  ALI+ P++S E+L+EY+  PDFPTGGII+  R    +
Sbjct: 188 GIAVGMATNIPPHNLGEVIDACQALIEKPDLSSEELIEYVPAPDFPTGGIIL-GRSGAQK 246

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+   EE+ +  + IV+ EIPYQV K+ +IE+IAEL+  K+I  +  +
Sbjct: 247 AYIEGRGSVIIRAKTRTEEIRKDRFAIVIDEIPYQVNKASMIERIAELVRDKKIDGISGV 306

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            DES      V+    R   P++++  +F  + M+T F  NM  L+ G  P+ + L G L
Sbjct: 307 ADESDRIGVRVVVELKRDATPEVVLNQLFRFTQMQTSFGCNMLALN-GGKPEQLTLRGFL 365

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------- 408
             +L  R EV+ RR++F ++    R  +L GL +A  N+DE++A IR             
Sbjct: 366 TSFLDFREEVVARRTAFELRKARDRAHVLCGLAVAVSNVDEVVATIRASADAPAARAALM 425

Query: 409 ----------------NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                           ++          ++L+E Q  AIL LRL+ L +L   ++  EL+
Sbjct: 426 TRAWPAEEILPFIKLIDDPTHVANEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELE 485

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            L  + +   ++L S ++    I+ E+ EV+  F+       RRT   E S        +
Sbjct: 486 ELAGKIKDYLAILASRERILEIISNELAEVRAKFA-----VDRRTEIVEWSGDMD---DE 537

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +IE+  + V I+  G+I+          K     ++    K+ D +     A+T   +L
Sbjct: 538 DLIERSDMVVTITQGGYIKRTPLADFRAQKRGGKGVAGGSMKDDDVVTSMFVANTHTPLL 597

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLV 616
             +T G  Y L    L   S    G+AI  ++ +     I      D         +++ 
Sbjct: 598 FFTTGGMVYKLKTWRLPSGSRSSRGKAIVNILPIEIGTGIAAIMPVDRDEEHWDELQVVF 657

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLI 672
            + +G       S+     R GK  +K   + +   M         D V +V +  + + 
Sbjct: 658 CTDRGTVRRNALSDFANVMRNGKIAMKFEGDSEGWRMINARIASNDDDVMLVTKQGRAIR 717

Query: 673 FSIDQIPEM-SRG-KGVRLQSYKDGGISDVICF--------------------------- 703
           F    +    SR   GVR            +                             
Sbjct: 718 FPATDVRVFNSRASTGVRGIKLGKDDEVVSMSIIRHFDAEASERAAYLKQRRLMAGVTEE 777

Query: 704 ------KICEG--------------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                  + EG                 +        +  +     +  RGG G      
Sbjct: 778 AETDEDDVPEGDLSPERYAEMSAAEDLILTITSGGLGKLSSSHDYPVRGRGGQGVSAIDK 837

Query: 744 FPRSGKFLSS 753
             R G  ++S
Sbjct: 838 AMRGGTLIAS 847



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L ++S G   +    +     R G+    +        +     V   D + +  
Sbjct: 801 AEDLILTITSGGLGKLSSSHDYPVRGRGGQGVSAIDKAMRGGTLIASFPVEMDDQIMLAT 860

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
              + +   ID I   SR   GV++ +   G     + +   +G  
Sbjct: 861 STGQSIRVPIDGISFRSRSAGGVKVFNTAKGEDIVSVAYIADQGDE 906


>gi|46143722|ref|ZP_00134570.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126208060|ref|YP_001053285.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           L20]
 gi|126096852|gb|ABN73680.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 748

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 263/746 (35%), Positives = 441/746 (59%), Gaps = 23/746 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAY 129
            +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAM 123

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT
Sbjct: 124 RYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMAT 183

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G 
Sbjct: 184 DIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGS 243

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++RA W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  + 
Sbjct: 244 IKMRAVWKKEDGE-----IVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHEN 298

Query: 310 --RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
             RIV+ P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  
Sbjct: 299 PIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLQTILTEWLTF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR  + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q
Sbjct: 359 RRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AILNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+
Sbjct: 419 AEAILNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFA 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ 
Sbjct: 479 SP-----RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRA 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD      +  +   ++ L + G+AY L   +L S R  GE +   I L     +    +
Sbjct: 533 GDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQVLM 592

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVV 664
            +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    +  +
Sbjct: 593 ANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAM 652

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWIDSAG-RS 718
               ++L+F I ++P++S+GKG ++ +      K+G         +    + +  +G R 
Sbjct: 653 SSVGRMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFVSGKRK 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                +D+  + G+R   GS + +G 
Sbjct: 713 ITLKPSDIDNYRGERARKGSQLVRGL 738


>gi|298291664|ref|YP_003693603.1| DNA gyrase subunit alpha [Starkeya novella DSM 506]
 gi|296928175|gb|ADH88984.1| DNA gyrase, A subunit [Starkeya novella DSM 506]
          Length = 918

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 256/750 (34%), Positives = 393/750 (52%), Gaps = 62/750 (8%)

Query: 6   ISNSNTLVEEN-----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +S+S+TL  E+     ++ VS+   L   YL YA+S I  RA+PD+RDG KPVHRRI+ +
Sbjct: 1   MSDSDTLKPEDGGPSDIRPVSITDELSRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E        + KSAR+ G+ +GK HPHG+Q++YD+LVRLAQ F  R PLI GQGNFG+
Sbjct: 61  MRENNYVPERPYNKSARVTGDTMGKYHPHGNQAIYDALVRLAQDFSMRLPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  AA RYTE R+ + A  +L  +D+D VDF+D Y+  + EP V P++FPNLL NG 
Sbjct: 121 IDGDPPAAERYTEVRLAKPAMNLLDDLDKDTVDFQDNYDGREQEPTVLPARFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A +ALID P++ IEKLL+YI GPDFPTG  ++  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVVDACVALIDEPDLDIEKLLDYIHGPDFPTGA-LILGRSGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +R+R  +EE+ +    I+VTEIPYQV K+ +IE+IAEL+  KR+  + +
Sbjct: 240 QAYLTGRGSIVMRSRATIEELRKDRDAIIVTEIPYQVNKATMIERIAELVRDKRLEGIAE 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES+ +   V+F   R    D+++ +++ +S ++T F  NM  L+ G  P +M L  +
Sbjct: 300 IRDESSREGLRVVFEIKRDAQADVVLNNLYRMSALQTSFGANMVALN-GGKPALMTLHDL 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           L  ++A R EV+ RR+ F ++    R  +L GL IA  NIDE+IA IR    P     + 
Sbjct: 359 LTAFVAFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIATIRRSPDPATAREAL 418

Query: 420 ----------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L+  Q  AIL+LRL+ L  L   ++  EL
Sbjct: 419 MTRDWPAMDVAPLIALIDDPRHKLAEDGTYRLSAEQARAILDLRLQRLTALGRDEVADEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D +  E      +L S ++    +  E+  VK  F              E++ A+     
Sbjct: 479 DKIAVEIRDYLDILASRERIRTIVKDELLAVKAEFGTPRKT--------EITDAEGDFED 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+I+          +      SA+  ++ D +     A T   +
Sbjct: 531 EDLIAREDMVVTVSHAGYIKRVPLSTYRSQRRGGKGRSAMQTRDEDFVTRIFVASTHAPV 590

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-----KLLV 616
           L  S+ G+ Y L    L   + +  G+A+  ++ L   + I +             +++ 
Sbjct: 591 LFFSSKGQVYKLKVWRLPLSAPQARGKALVNILPLTEGERITSIMALPDEETWSRLQIMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            ++ G     E S+     R GK  +K+   E +  V   T  D V +     + + F +
Sbjct: 651 STTGGTVRRNELSDFTNVNRNGKIAMKLEEGEAIADVDLCTEQDDVLLTSAKGQCIRFPV 710

Query: 676 DQIPE-MSR-GKGVRLQSYKDGGISDVICF 703
            ++     R   GVR    ++G     +  
Sbjct: 711 PEVRVFKGRDSMGVRGIQLEEGDRLISMAI 740



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 85/288 (29%), Gaps = 36/288 (12%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
               G R T+   +   +  +  Q M      TV  +      ++  +     A+  +EG
Sbjct: 624 PLTEGERITSIMALPDEETWSRLQIMFSTTGGTVRRNELSDFTNVNRN--GKIAMKLEEG 681

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           +++         D +LL S  G+    P   +   +G        I L     +++  + 
Sbjct: 682 EAIADVDLCTEQDDVLLTSAKGQCIRFPVPEVRVFKGRDSMGVRGIQLEEGDRLISMAII 741

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE--------------------- 647
                    +++  A  ++ +  +  ++ G     + +                      
Sbjct: 742 RHVD----ATAEERAAYIKLANAVRRSQAG-----LENGAEEPETVADADAEEAVAAPAD 792

Query: 648 -EKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFK 704
            ++ + V     +  +  + EN      S  +     RG KG+   +  +     +  F 
Sbjct: 793 IDQARYVEMSANEQFILTLSENGFGKRTSSFEYRTTRRGGKGIVAMAVNERNGPLIASFP 852

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + E    +                 +  RG  G +V        K +S
Sbjct: 853 VEEADQIMLVTDGGQLIRCPVNGIRIVGRGSQGVIVFNTAE-DEKVVS 899



 Score = 41.7 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 11/39 (28%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
           I      +  +   Y +          +RGG G    + 
Sbjct: 534 IAREDMVVTVSHAGYIKRVPLSTYRSQRRGGKGRSAMQT 572



 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 2/99 (2%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             IL LS +G      +    + R  G+ I  +     N  ++ +F  +   ++++V+  
Sbjct: 806 QFILTLSENGFGKRTSSFEYRTTRRGGKGIVAMAVNERNGPLIASFPVEEADQIMLVTDG 865

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           G       + I    R   G      + +EK+  V +V+
Sbjct: 866 GQLIRCPVNGIRIVGRGSQGVIVFNTAEDEKVVSVERVS 904


>gi|85058253|ref|YP_453955.1| DNA topoisomerase IV subunit A [Sodalis glossinidius str.
           'morsitans']
 gi|84778773|dbj|BAE73550.1| DNA topoisomerase IV subunit A [Sodalis glossinidius str.
           'morsitans']
          Length = 757

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 276/754 (36%), Positives = 441/754 (58%), Gaps = 26/754 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SELTHDGAERLALHKFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP++ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPMVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSRYAEVLLGELGQGTVDYVPNFDGTLDEPKMLPARLPNVLLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV E+  AA+AL+ NP  ++E+LLE++ GPDFPT   I+  ++ + + Y  GRG
Sbjct: 182 TDIPPHNVNEVAAAAIALLGNPAATLEQLLEHVKGPDFPTEAEIITPQDDLRKIYHTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W VE+        V++ +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRALWTVEDGEA-----VISALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D   +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRVDLTQVMNHLFATTDLERSYRVNMNMIGLDGRPAVKNLHEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ + RR +FR++ + RR+ IL GLL+AYLN+DE+I IIR +D+PK V++ RF L+E 
Sbjct: 357 YRRDTVRRRLNFRLEKVLRRLHILTGLLVAYLNLDEVIHIIRTKDEPKQVLMQRFELSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL L+LR L KLEE +++ E D L  E++KI ++L S ++  N +  EI      +
Sbjct: 417 QADAILELKLRHLAKLEEMKLRGEQDELEKERDKIQAILASERKLSNLLKKEIEADDAAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             +     RR+   E   A   +  + M   EP+TV++S  GW+RS K H +D S L ++
Sbjct: 477 GDA-----RRSPLIERGEAKALSENELM-PSEPVTVILSTMGWVRSAKGHDIDPSGLGYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+   ++   +   ++ + + G++Y L    L S RG GE +   + L     +    
Sbjct: 531 SGDNYLSSVRGKSNQPVVFIDSTGRSYALEPACLPSARGQGEPLTGKLTLPPGAAVEQML 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVV 664
                 KLL+ S  G  F+   S+++A  R GK  L +    K+   + + G  D +  +
Sbjct: 591 TGADERKLLMASDAGYGFVCSFSDLVARNRAGKALLTLPENAKVMPPLWLNGAADKLLAL 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID--------SAG 716
            E  +LL+F +D +P++S+GKG ++ S                GL  +            
Sbjct: 651 TEAGRLLMFPVDDLPQLSKGKGNKIISIPSAD--AAAGKDRLAGLYLLSTKASVTFYVGK 708

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  +  +RG  G+L+P+G     + 
Sbjct: 709 RKLTLRPEDLQKFSAERGRKGTLLPRGLQHIDRV 742


>gi|58001765|gb|AAW60659.1| DNA gyrase subunit A [Gluconobacter oxydans 621H]
          Length = 924

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 250/829 (30%), Positives = 377/829 (45%), Gaps = 103/829 (12%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YLAYA+S I  RA+PD+RDG KPVHRRI++AM E G      ++KSAR VG+V+GK
Sbjct: 1   MRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAVGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGDS AA RYTEAR+ + +  +L 
Sbjct: 61  YHPHGDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKASSFLLD 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++ D VDF+  Y+E ++EP V P+ FPNLL NG +GIAVGMAT+IP+HN  E+ +A LA
Sbjct: 121 DIERDTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEVIDATLA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +I NP I +++L++ I GPDFPTGG I+  R  I  +Y  GRG   VRAR  +EE+ +  
Sbjct: 181 MIANPAIELDELMQIIPGPDFPTGG-IIMGRSGIRRAYETGRGSIPVRARAEIEEIRKDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TEIPYQV K+ L EKIA+L+ +K I  + DIRDES      V+    R   PD++
Sbjct: 240 QAIIITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDATPDVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L     P+ M L  IL+ +L  R EV+ RR+ F +     
Sbjct: 300 LNQLYRFTQLQTSFSANMLALDD-GKPRTMGLKDILEAFLRFREEVILRRARFDLNKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----------------------- 422
           R  +L GL++A  NIDE+IA+IR          S  +                       
Sbjct: 359 RGHLLVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEGNVII 418

Query: 423 -----LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                LTE Q   IL LRL+ L  LE  +I+ EL  +  +  ++ +++ S  ++   +  
Sbjct: 419 DGKVRLTEAQARGILELRLQRLTGLEREKIQGELGEVAQKIGELLAIIESRPRRMEVMRE 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+   +   +             +   +     Q  +       +  +     RS     
Sbjct: 479 ELLAARAEVATPRVTEISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFRSQNRGG 538

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID 595
              +A   +  D +  + +AHT   ++  S+ GKAY +   +L       +  A+  L+ 
Sbjct: 539 RGRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHLPEAAPTAKGRALVNLLP 598

Query: 596 LNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
                 I                 L   ++ GN      S+       G   +K+   + 
Sbjct: 599 ELGTDSITAVLPLPQDEELWEDLHLAFATASGNVRRNRLSDFRNIRASGLIAMKLDEGDS 658

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEM-SRG-KGVRLQSYKDGGISDVICF- 703
           +  V     G  V +  +N + + F I    +     RG  GVR     +G     +C  
Sbjct: 659 LIGVATCREGQDVFLATKNARCIRFQITDETLRVFAGRGSTGVRGIRLGEGDAVISLCIL 718

Query: 704 -----------------------------KICEGLTW------IDSAG------------ 716
                                           E  T       ++  G            
Sbjct: 719 NHVDASVEERAAYLRMANAKRRAENAALDDSAEDETVSGDEETVEITGDLTQERFEELEQ 778

Query: 717 ----------RSYNRSENDLLGWLGKRGGVGSLVPKGF-PRSGK-FLSS 753
                       + R  +     +  RGG G         R GK  + +
Sbjct: 779 QEEILLTVTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGT 827



 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 8/101 (7%)

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-----SSEEKMKLVVKV-TGDHVAVVGENRKL 670
           V+  G        +   + R G+    +        +++   +    G  V +V +  +L
Sbjct: 786 VTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDGTDVMLVTDTGRL 845

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           +   + Q+  MSR   GV L    D     +  F + E  T
Sbjct: 846 IRLPVSQVRVMSRQASGVTLFRLNDTETV-ICVFPVLEDDT 885


>gi|262404742|ref|ZP_06081297.1| topoisomerase IV subunit A [Vibrio sp. RC586]
 gi|262349774|gb|EEY98912.1| topoisomerase IV subunit A [Vibrio sp. RC586]
          Length = 761

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 285/751 (37%), Positives = 444/751 (59%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ EA + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVAEATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        ++ + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSSQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGGLLPRGLQRV 741


>gi|262166469|ref|ZP_06034206.1| topoisomerase IV subunit A [Vibrio mimicus VM223]
 gi|262026185|gb|EEY44853.1| topoisomerase IV subunit A [Vibrio mimicus VM223]
          Length = 762

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 282/751 (37%), Positives = 442/751 (58%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LID+P   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGGLLPRGLQRV 741


>gi|224534775|ref|ZP_03675347.1| DNA gyrase, A subunit [Borrelia spielmanii A14S]
 gi|224514023|gb|EEF84345.1| DNA gyrase, A subunit [Borrelia spielmanii A14S]
          Length = 810

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 421/760 (55%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AF
Sbjct: 6   NKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYT
Sbjct: 66  KKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++AE I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++ 
Sbjct: 126 EAKMEKIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMA 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EIC+A + ++DN   S+  LL+ + GPDFPT G IV + ++++++Y+ G+G   +
Sbjct: 186 PHNLREICDAIVYMLDNENASMFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA++ +EE       ++VTEIPY V KS L+ K+A L   +++  L DIRDES  +   +
Sbjct: 245 RAKYHIEERTEDRNAVIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP ++M  ++  ++ +  F +N   L    +P+ + L+ +L E++ HR+ ++
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVD-GIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I +I   +     K  +V+ F L+E Q +
Sbjct: 364 ERRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKVIKLSKLSKDAKERLVANFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           ++L+++L+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E   +   F   
Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPVRIINIIREETINLGLKFGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    +++KE I V+++ +G+++ L  +           LS
Sbjct: 484 -----RRTKII-YDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHN 599
           +    +GD + IAL  +T D + ++S +GK Y + A  +       +   +   I+L   
Sbjct: 538 SFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQ 597

Query: 600 QDIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+T      +     LL+ ++ G     E ++      +G   +K++ ++ +     V
Sbjct: 598 EEILTIKNSKDFTDDACLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIV 657

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             D  V  + +     IF+   +   +RG +GV     K+G +  V    + E    +  
Sbjct: 658 FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLALRENPYLLII 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
           +   Y +  +       KRG  G    K   +  G  + +
Sbjct: 717 SENGYGKRLSVSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 60/184 (32%), Gaps = 7/184 (3%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                      S  +  +   + D +  A      ++++ LS  G A+   + ++     
Sbjct: 626 RFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNR 685

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
             + +  +  L      V          LL++S  G    +  S+I    R    +    
Sbjct: 686 GTQGVCGM-KLKEGDLFVKVLALRENPYLLIISENGYGKRLSVSKISELKRGATGYTSYK 744

Query: 646 SEEK-----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             +K     +  +     D + +V +  K L     ++ E  +  +GV++    +  +  
Sbjct: 745 KSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGVQVLFLDNDNLIS 804

Query: 700 VICF 703
           V  F
Sbjct: 805 VSKF 808


>gi|330983687|gb|EGH81790.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 750

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 265/754 (35%), Positives = 429/754 (56%), Gaps = 23/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  +  + V+  SL    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDTTQMSMDGVERRSLADFTESAYLNYSMYVILDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE +L  + +  VDF   ++    EP+  P++ PN+L NGTSGIA
Sbjct: 121 SFAAMRYTEARLSRYAETMLDELGQGTVDFGPNFDGTMQEPLTLPARLPNILLNGTSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + LID P  S+E LLE++  PD+PT   I+ S   + + Y 
Sbjct: 181 VGMATDVPPHNLREVAAACIRLIDQPTASLENLLEHVKAPDYPTSAEIISSPADLHKVYS 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       +V+T +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIRMRAVYNVEDGD-----VVITGLPHQVSGAKVLEQIAAQMQAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D   LM+ +F  +++E+ + +NMNV+ +   PQV  L  +L 
Sbjct: 296 SDHENPCRIVIVPRSNRVDTQGLMDHLFATTELESTYRVNMNVIGLDGRPQVKDLRTMLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  +R+  +D+R+ +L+GLLIA+LN+DE+I IIR E+ P+  +++RF 
Sbjct: 356 EWLQYRITTVRRRLQYRLDKVDKRLHLLEGLLIAFLNMDEVIHIIRTEEHPRVALMARFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL  RLR L +LEE +I+ E + LL E+E +   L S  Q    +  EI   
Sbjct: 416 LSEAQADYILETRLRQLARLEEMKIRGEQEELLRERETLAGYLGSETQLKGLVREEIMAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E + A   +  + M   EP+TVV+S +GW+R+ K   VD S 
Sbjct: 476 ADYYGD-----DRRSPLVERAEAKALSESELM-PSEPVTVVLSEKGWVRAGKGSDVDGST 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+ K +    +    + + + G++++L A  L S R  GE +   +        
Sbjct: 530 LSYKAGDTFKTSASGRSNQFAVFIDSTGRSFSLAAHTLASARTQGEPLSGKLTGQPGASY 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + D     ++ S  G  F+V+  ++ A  + GK  + +S   K+ + + V      
Sbjct: 590 EWVVMPDDEALYVLASDAGYGFLVKGEDLQAKNKNGKALINLSENSKVLMPLPVSNADEQ 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG------GISDVICFKICEGLTWID 713
            +  +    +LL+F   ++P++ +GKG ++ S           +   +          I 
Sbjct: 650 WIVALTSEGRLLMFKASELPQLGKGKGNKIISVPSDKAQAREELMTQLLVLDEGKSVVIT 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           S  R+      DL  +   RG  GS++P+G+ + 
Sbjct: 710 SGKRTMTLKPGDLESYKSMRGKRGSMLPRGYQKV 743


>gi|295401843|ref|ZP_06811807.1| DNA topoisomerase IV, A subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111015|ref|YP_003989331.1| DNA topoisomerase IV subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294976097|gb|EFG51711.1| DNA topoisomerase IV, A subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216116|gb|ADP74720.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y4.1MC1]
          Length = 814

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 213/758 (28%), Positives = 382/758 (50%), Gaps = 26/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  + L   L +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F
Sbjct: 1   MAERLLDLPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYIDGNTADKPF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYT
Sbjct: 61  RKAAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNILIEMHGNNGSIDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +++  V+F   +++  +EPVV P+ FPNLL NG++GI+ G AT IP
Sbjct: 121 EARLSSIALELLRDIEKQTVEFVPNFDDTTNEPVVLPAMFPNLLVNGSTGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H++ E+ +A +  ID P+ ++++L+  I GPDFPTGG I++ ++ I ++Y  G+G   +
Sbjct: 181 PHHLGEVIDAVIMRIDKPKCTVDELMTVIQGPDFPTGG-IIQGKDGIKKAYETGKGKIII 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  +E+   G   I++TE+PY+V K+ L++KI EL   K++  + D+RDE+      +
Sbjct: 240 RGKAAIEQGKGGKKQIIITELPYEVNKANLVKKIDELRFDKKLDGIADVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++  ++  +D++  +     V    R P+++ L  +L  ++ HR+EV+
Sbjct: 300 VIELKKDADAEGILNYLYKNTDLQVPYSF-NMVAIHERRPKLLSLPELLDAYIEHRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
             RS + ++    R  I++GL+ A   +DE+IA IR     +    +   ++  TE Q +
Sbjct: 359 TNRSQYELKKAYERQHIVEGLVKALSILDEVIATIRASRDKRDAKDNLIAKYEFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E + L    +++ ++LNS K+    I  E++ +K+ ++  
Sbjct: 419 AIVSLQLYRLTNTDITALQQEAEQLEKTIQELTTILNSEKKLLAVIKRELKAMKKQYADE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL---SALHFK 546
                 R T  E    +     + MI  E + V ++  G+++     S +         K
Sbjct: 479 ------RRTVIEDEIEELKINLEVMIPSEDVIVTVTKEGYVKRTSYRSYNASNGQDFGMK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D L   +  +TTD +LL +  G     P   L   R       I  LI L+ + D++ 
Sbjct: 533 ESDRLLSQMEMNTTDVLLLFTRKGNYLYCPVYELPDIRWKDVGQHISNLIPLDRDDDLIA 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
           A     +D    L+ V+ +G     E  +       +    + V   +++  V    G  
Sbjct: 593 AVPVKRFDEPLSLVFVTKQGMVKRTELGQYKVQRYTRPLVAINVKEGDEVIHVHATDGQQ 652

Query: 661 -VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGR 717
            + ++      L F   +I  +  R  GV+  + K+G  +              +    R
Sbjct: 653 SLLLITNQGYGLWFDEAEISMVGVRAAGVKGINLKEGDHVVSAHPIVAEGEQYLVIVTQR 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
              +           R   G ++ +   ++   + ++S
Sbjct: 713 GAIKKMPLSEFTKTSRAKRGVVMLREL-KTNPHRIVAS 749


>gi|328949381|ref|YP_004366718.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489]
 gi|328449705|gb|AEB15421.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489]
          Length = 818

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 236/765 (30%), Positives = 379/765 (49%), Gaps = 29/765 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            NT    N+  + +   +++ ++ Y++S I  RA+PD RDG KPVHRRII++M E  L  
Sbjct: 2   ENTENTTNLIKIPIEDEVKQAFIDYSMSVIVSRALPDSRDGLKPVHRRIIYSMEENHLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           G   KK A IVG+V+GK HPHGD SVYD+LVRL Q F QRY ++   GNFG I GD  AA
Sbjct: 62  GGKTKKCATIVGDVLGKYHPHGDASVYDALVRLGQDFSQRYIVVHPGGNFGTIAGDPPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           YRYTEA+MT++AE +++ +++D VD    Y++   EP V PSKFP LL NG+ GIAVGMA
Sbjct: 122 YRYTEAKMTKIAEEMVEDINKDTVDMIPNYDDTKEEPTVLPSKFPFLLCNGSVGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++P HN++E+  A  A IDN  I++++LL +I GPDFPTGG I+  +  I ++YR GRG
Sbjct: 182 TNMPPHNLREVASAISAYIDNQNITVDELLNHIKGPDFPTGG-IIFGKHGIADAYRTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAE 307
              VR R+ +E    G   IV TE+PY V    L EKI EL   K I  +  I DE S  
Sbjct: 241 KILVRGRFNIEVSKTGLESIVFTEVPYGVNTRTLCEKIGELARDKVIDGISAINDESSDR 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++    R     +++  +F  + +++ F +    L     PQ++ L  I+K ++ H
Sbjct: 301 SGMRIVIHLKRGAITKVVINQLFAKTALQSSFGVINLALVK-GRPQILNLKQIIKCFVDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLT 424
           R EV+ RR +F +     R  IL+ L+ A   IDE+I +IR+          ++ RF   
Sbjct: 360 RDEVITRRVTFDLNKARAREHILEALITAVDAIDEVIKMIRSSRDETEAKARLMQRFGFD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AI+ +RL  L  L   +++ E++ + A     + LL   ++    I  E  E+ E
Sbjct: 420 EIQAEAIVEMRLGRLTNLRIDELRKEMEEVKAFIAHCEDLLAHHEKILAIIKDETNELSE 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SH 536
            +        R+T     +   ++   + +I++E + ++IS  G+I+ +           
Sbjct: 480 KYGD-----DRKTDIV--AGEVESINVEDLIKEEDMVILISKLGYIKRVSVSQYKSQGRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
                +    E D +     A T D ++ ++T+GKAY +    +           I+ L+
Sbjct: 533 GKGTISAKLVEEDYINQMFVASTHDYLMFITTEGKAYWIKVHEIPEASKTSRGSHIKSLL 592

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +N N+DI T      +     L + ++ G       S+      +G   +++   + + 
Sbjct: 593 AVNANEDITTIVSLKEFSENNYLFMATANGVVKKTPTSDFKNAKSRGMQAVRLDEGDTLV 652

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS-DVICFKICEG 708
             +  TG D + +V    + L  + + +  M R  +GV      +G      I       
Sbjct: 653 SAILSTGKDELLLVSRRGQALRINEEDVRPMGRSSRGVAGLKLSEGDELCSAIRIHTEPD 712

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +    +   +  +        RG  G  +       G+ + +
Sbjct: 713 SKILVVTEKGIGKRVDSAEFNAHGRGTGGQKIFGNVEDKGEIIGA 757



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           H     +IL+++  G    + +    +        ++  ++    +I+ A     T  ++
Sbjct: 708 HTEPDSKILVVTEKGIGKRVDSAEFNAHGRGTGGQKIFGNVEDKGEIIGALCVRDTDSIM 767

Query: 616 VVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTGDH 660
            ++S+G +  VE  +I    R   G   + ++  + +  V ++  D 
Sbjct: 768 CITSQGTSVRVEAKDITVQGRGASGIKVVSITDPDYVVGVDRIANDE 814


>gi|296114886|ref|ZP_06833534.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769]
 gi|295978592|gb|EFG85322.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769]
          Length = 934

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/748 (32%), Positives = 371/748 (49%), Gaps = 44/748 (5%)

Query: 6   ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++         ++  V++   +   YLAYA+S I  RA+PD+RDG KPVHRRI+++M E 
Sbjct: 1   MTEIPEQTPPSDMLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSMRES 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      ++KSAR VG+V+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGD
Sbjct: 61  GFTHDKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDGD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+ + A  +L  +D D VDF+  Y+E + EP + P+ FPNLL NG SGIA
Sbjct: 121 SPAAMRYTEARLARAASFLLDDIDRDTVDFQPNYDESEQEPQILPAAFPNLLVNGASGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN  EI +A LA+I+ P+++++ +L+Y+ GPDFPTGG I+  R  I  ++ 
Sbjct: 181 VGMATNIPPHNPGEIIDATLAMIERPDMTLDDILQYVPGPDFPTGGTIL-GRAGIRSAFE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RAR  VE++ R    I+VTEIPYQV K+ L E+IAEL+  K++  + DIRDE
Sbjct: 240 TGRGSVIIRARAEVEDIRRDRKAIIVTEIPYQVNKATLQERIAELVRNKQVEGISDIRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      ++    R   P++++  ++  + ++T F +NM  L  G  P++M L  +L+ +
Sbjct: 300 SDRSGMRIVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALD-GGQPRLMGLKDVLQAF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--------------- 409
           +  R EV+ RR+ F +     R  +L GL+IA  NID +IA+IR                
Sbjct: 359 IRFREEVILRRARFDLNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAATARAALMERA 418

Query: 410 -------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                         D+   V+  R  LTE Q   IL LRL+ L  LE  +I+ EL  +  
Sbjct: 419 WDAGDIAPLLALIHDEGNVVVDQRVHLTEAQARGILELRLQRLTGLERDKIQQELSEVAT 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++  ++ S  ++   +  E+  V+   +             +   +     Q  +  
Sbjct: 479 RINELLEIIASRPRRMEVMRNELATVRAEIATPRATDIADYAGDQTDESLIEPGQMVVTI 538

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +  +     R+        +A   +  D +  + +AHT   +L  S+ GKAY   
Sbjct: 539 TRDGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIIRSFNAHTHQWVLFFSSGGKAYREK 598

Query: 577 AGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEE 628
              L       +  A+  L+       I                 L+  +S GN      
Sbjct: 599 VWRLPEASPTAKGRALVNLLPDLGEDSITAVLPLPQDEDLWENLHLVFATSSGNVRRNRL 658

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEM-SRG 684
           S+       G   +K+   +++  V     G  V +   N + + F I    +     RG
Sbjct: 659 SDFRNIRSSGLIAMKLDDGDRLIGVATCREGQDVFLGTRNARCIRFQITDDTLRVFAGRG 718

Query: 685 -KGVRLQSYKDGGISDVICFKICEGLTW 711
             GVR     +G   + +C       T 
Sbjct: 719 SSGVRGIRLAEGDEVNSLCVLNHVDATV 746



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKV------SSEEKMKLVVKVTGDHVAVVGEN 667
           LL+VS+ G        +   + R G     +           +  +  + G  V +V + 
Sbjct: 806 LLIVSNAGFGRRSSAYDYRVSGRGGLGINNMSFPTARRGNAVVATLPVLAGTDVMLVTDA 865

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            +L+   +DQI  MSR   GV L    D      +   + +G  
Sbjct: 866 GRLIRLPVDQIRIMSRQASGVTLFRLNDTEEVTSVFPVMDDGED 909



 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 10/36 (27%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           I  G   +      + +     +     RGG G   
Sbjct: 529 IEPGQMVVTITRDGFIKRTPLDVFRAQNRGGRGRTA 564


>gi|254512056|ref|ZP_05124123.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535767|gb|EEE38755.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11]
          Length = 907

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 261/829 (31%), Positives = 411/829 (49%), Gaps = 105/829 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR V
Sbjct: 26  VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKAYRKSARPV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 86  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 146 AASLLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALID+P+++ E+L+EY+ GPDFPTGG ++  R    ++Y  GRG   +RA+   E
Sbjct: 206 VDATLALIDDPDLTSEQLIEYVPGPDFPTGG-VMLGRSGARKAYLEGRGSVIIRAKTRTE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IVV EIPYQV K+ +IEKIAE +  KRI  +  ++DES  +   V+    R 
Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELKRD 324

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  S M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++ 
Sbjct: 325 ATPEVVLNQLYRFSPMQTSFGCNMLALN-GGRPEQLTLRRFLTSFIDFREDVVARRTAYD 383

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------------ 415
           ++    R  IL GL +A  N+DE++A IR+                              
Sbjct: 384 LRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEAREKLMTRRWPASEIEGYLRLIDD 443

Query: 416 -----VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++LTE Q  AIL+LRL+ L ++   ++  EL+ L A+ ++   +L+S ++
Sbjct: 444 PLSKMNDDGTYNLTEVQARAILDLRLQRLTQIGVKEVTDELEELAAKIKEYLDILSSRER 503

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             + I  E+R V+E F+       RRT   + S   +    + +IE+E + V +++ G+I
Sbjct: 504 IMSIIGDELRSVREQFAVP-----RRTEIVDWSGDME---DEDLIEREDMVVTVTSGGYI 555

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--L 580
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L       
Sbjct: 556 KRTPLADFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 615

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
            S  G G+AI  ++ +     I      D         +++  +S G+      S+    
Sbjct: 616 SSRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATSAGDVRRNRLSDFTNV 675

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQS 691
            R GK  +K+  + ++      + D  V +V  + + + F    +    SR   GVR   
Sbjct: 676 RRNGKIAMKLPEDVELVNARICSEDEDVMLVTNSGRAIRFRTTDVRVFNSRESTGVRGIK 735

Query: 692 YKDGGISDVICF-----------------------KICEGLT------------------ 710
             +G     +                            +G T                  
Sbjct: 736 LTNGDHVVSMSVIRHFEADPDERAAYLKMRRAVAGIADDGETDEDEATPGSISQERYAQM 795

Query: 711 ------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  +        +  +     +  RGG+G        R G+ ++S
Sbjct: 796 SAAENLILTITSGGSGKLSSSHDYPVRGRGGMGVAAMDRAMRGGELVAS 844



 Score = 42.5 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L ++S G+  +    +     R G     +       ++     V   D + +  
Sbjct: 798 AENLILTITSGGSGKLSSSHDYPVRGRGGMGVAAMDRAMRGGELVASFPVDLDDQIMLAT 857

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
              + +   +D I   SR   GV++ +   G     + +   +G  
Sbjct: 858 SKGQSIRVPVDGISFRSRSAGGVKVFNTGKGEEVVSVAWIADQGEE 903



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 46/161 (28%), Gaps = 2/161 (1%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           +   +            E    +   R           D            + A  +   
Sbjct: 740 DHVVSMSVIRHFEADPDERAAYLKMRRAVAGIADDGETDEDEATPGSISQERYAQMSAAE 799

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           + IL +++ G      + +       G  +  +       ++V +F  D   ++++ +SK
Sbjct: 800 NLILTITSGGSGKLSSSHDYPVRGRGGMGVAAMDRAMRGGELVASFPVDLDDQIMLATSK 859

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           G +  V    I   +R   G         E++  V  +   
Sbjct: 860 GQSIRVPVDGISFRSRSAGGVKVFNTGKGEEVVSVAWIADQ 900


>gi|165975992|ref|YP_001651585.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876093|gb|ABY69141.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 736

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 261/737 (35%), Positives = 436/737 (59%), Gaps = 23/737 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KKSAR V
Sbjct: 1   MPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE+++++
Sbjct: 61  GDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSK 120

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP HN+ E
Sbjct: 121 MAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINE 180

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++RA W  
Sbjct: 181 LAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMRAVWKK 240

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPK 316
           E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  +   RIVL P+
Sbjct: 241 EDGE-----IVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRIVLVPR 295

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  + RR 
Sbjct: 296 SNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTTVTRRL 355

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AILNLRL
Sbjct: 356 NYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAILNLRL 415

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+       R 
Sbjct: 416 RHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-----RH 470

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD      +
Sbjct: 471 SPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGYLAHAY 529

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
             +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S  K+L+
Sbjct: 530 GRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSDTKVLM 589

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIF 673
            S  G  FI    ++++  + GK  + ++   K+     +  +    +  +    ++L+F
Sbjct: 590 ASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVF 649

Query: 674 SIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWIDSAG-RSYNRSENDLL 727
            I ++P++S+GKG ++ +      K+G         +    + +  +G R      +D+ 
Sbjct: 650 PITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFVSGKRKITLKPSDID 709

Query: 728 GWLGKRGGVGSLVPKGF 744
            + G+R   GS + +G 
Sbjct: 710 NYRGERARKGSQLVRGL 726


>gi|148260183|ref|YP_001234310.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5]
 gi|146401864|gb|ABQ30391.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5]
          Length = 910

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 246/844 (29%), Positives = 380/844 (45%), Gaps = 98/844 (11%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++    E       V++   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 1   MTDTTDQTEGPSGQVPVTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAMQE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      ++KSAR+VG+V+GK HPHGD ++YD+ VR+AQ F  R PLI GQGNFG++DG
Sbjct: 61  AGNTPDKPYRKSARMVGDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTEAR+   A  +L  +D+D VDF+ TY+E DSEP V P+ FPNLL NG +GI
Sbjct: 121 DPPAAMRYTEARLADAAMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGNGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN  EI +A L LI  PE +++ L+  + GPDFPTGGII+  R  I  ++
Sbjct: 181 AVGMATNIPPHNPAEIIDATLHLIAQPEATLDDLMRIVPGPDFPTGGIIL-GRSGIRSAF 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRGG  VRAR  +EE+ +    I+V+E+PYQV K+ L+E+IAEL+ AK I  + D+RD
Sbjct: 240 ETGRGGIVVRARTSIEEIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLRD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   ++    R   P++++  ++  + M+T F +NM  L  G  P+ + L   L  
Sbjct: 300 ESDREGMRMVIELKRDATPEVVLNHLYRFTQMQTGFGINMLALD-GGRPRQLGLRDALDC 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------- 412
           ++A R +V+ RRS F +     R  +L GL IA  NIDE+IA+IR               
Sbjct: 359 FIAFREDVILRRSRFELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMAR 418

Query: 413 ------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                              +        LTE Q   IL LRL+ L  LE  +I+SEL  +
Sbjct: 419 DWPAGDVRPLLELIDDHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEV 478

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
                ++  ++ S  ++   +  E+  V+   +         +   +   +     Q  +
Sbjct: 479 GRRIGELLEIIASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQDDESLIEPGQMVV 538

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
                  +  +     R+        +A   +  D +  + +AHT   +L  S  GKA+ 
Sbjct: 539 TMTRDGFIKRTPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAFR 598

Query: 575 LPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIV 626
                L       +  AI  ++   +   +                 L+  ++ GN    
Sbjct: 599 EKVWRLPESAPAAKGRAIVNILPELNGDAVTAVLPLPQDESLWNDLHLVFATASGNVRRN 658

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEM-S 682
             ++       G   +K+   +++  V     GD V +     + + F I    +     
Sbjct: 659 RLADFRNVRSTGLIAMKLDDGDRLIGVATCREGDDVFLATRQARCIRFQITDDTLRVFAG 718

Query: 683 R-GKGVRLQSYKDGGISDVICF------KICE---------------------------- 707
           R   GVR      G     +         + E                            
Sbjct: 719 RDSSGVRGIRLGAGDEVISLSVLRHVEASVDERAAYLKYAAAQRRAGGEEGELDAVESDE 778

Query: 708 ------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                                 +      + +  +     +  RGG G        R+G+
Sbjct: 779 AAADIQLTPERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNGR 838

Query: 750 FLSS 753
            +++
Sbjct: 839 AVAA 842



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG----KTFLKVSSEEKMKLVVKV-TGDHVAVV 664
           +   +L V++ G   +    E     R G       L   +   +     V  GD + +V
Sbjct: 796 AEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNGRAVAASFPVRPGDDIMLV 855

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLT 710
            +  KL+   +DQ+    R   GV L    KD  ++ V       G  
Sbjct: 856 TDQGKLIRAPVDQVRITGRQAMGVTLVRVEKDEQVTSVFPVLDDSGDE 903



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/95 (10%), Positives = 27/95 (28%), Gaps = 2/95 (2%)

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD-GGISDVICFKICEG 708
              ++   + +  V       + S  +     RG +G+   +     G +    F +  G
Sbjct: 790 IAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNGRAVAASFPVRPG 849

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
              +    +            +  R  +G  + + 
Sbjct: 850 DDIMLVTDQGKLIRAPVDQVRITGRQAMGVTLVRV 884


>gi|262170624|ref|ZP_06038302.1| topoisomerase IV subunit A [Vibrio mimicus MB-451]
 gi|261891700|gb|EEY37686.1| topoisomerase IV subunit A [Vibrio mimicus MB-451]
          Length = 761

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 282/751 (37%), Positives = 442/751 (58%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LID+P   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGGLLPRGLQRV 741


>gi|73666865|ref|YP_302881.1| DNA gyrase subunit A [Ehrlichia canis str. Jake]
 gi|72394006|gb|AAZ68283.1| DNA gyrase, subunit A [Ehrlichia canis str. Jake]
          Length = 898

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/839 (28%), Positives = 388/839 (46%), Gaps = 98/839 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ N     NV +VS+   LE+ YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G
Sbjct: 1   MSDLN-----NVISVSIEQELEDSYLSYAMSVIISRAIPDIRDGLKPVHRRILYSMYKSG 55

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+G  +KK+AR+VG+V+GK HPH D ++YDSLVR+AQ F    PLI  QGNFG+IDGD 
Sbjct: 56  YDYGKPYKKAARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDP 115

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            A+ RYTEAR+ + A  +L  +DED VDFR  Y+E + EPVV P++FPN+L NG  G+AV
Sbjct: 116 PASMRYTEARLARAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAV 175

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM+T+IPSHN+ E+ +A +A IDNPEI+ ++L+  + GPDFPTGG I+     I  ++  
Sbjct: 176 GMSTNIPSHNLGEVVDACIAYIDNPEITFDELINIVRGPDFPTGGTIL-GDAGIRSAFMT 234

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   V+ +  +E++  G   I++ EIPYQV K++LIE+I EL+  K+I  + D+RDES
Sbjct: 235 GKGTIIVQGKTHLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKKIEGILDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    V     + +   +++  I  L+ + T F +N  VL     P+VM L  I+  ++
Sbjct: 295 NKMGIRVAIELKKQVSHQVVLNQILGLTPLRTTFSINTLVL-ENNKPKVMSLLDIISTFV 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------ 419
            +RREVL RR+ FR++ +  +  +  G+ IA LNID++I+IIR+                
Sbjct: 354 EYRREVLTRRTQFRLRKVREKAHLYIGMYIAVLNIDKVISIIRSSRDTAEATKRLLECKW 413

Query: 420 -----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                     LT  QV +IL ++L+ L  LE+ +++ +L ++++
Sbjct: 414 DALTSVREMIELVADTKSLVVDDVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVS 473

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              +   LL + +     I   + +VK   +         + F              +  
Sbjct: 474 MIRQYTELLKNKEALLKLIKDGLIDVKTKLAVPRRTTIDYSHFETDVEDLIPKEDMVVTV 533

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +  +     R+ +           KE D +      +T   +L  S  G+ Y L 
Sbjct: 534 TMSGYIKRAKLSNYRAQRRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLK 593

Query: 577 AGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEE 628
              L        G ++  +  L+ N+ I +               ++  ++ GN      
Sbjct: 594 VYKLPLGEPTSRGRSLVNIFPLSENESITSVMSLPDNVEDAESLNIVFATASGNLRRNAL 653

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-MSR-GK 685
           ++       GK  + +   + +  V      DHV +     K + FS+  + +   R   
Sbjct: 654 ADFQYVPSNGKIAMVLDEGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSD 713

Query: 686 GVRLQSYKDGGISDVICFKIC--------------------------------------- 706
           GVR            +   +                                        
Sbjct: 714 GVRAIKLSSQDNVISMSILLAMDIGSEKKDLYLKVPLDKRIAVKEEGFIGTGIVKILADL 773

Query: 707 ------------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                            +      + +  +        RGGVG +      R+G  ++S
Sbjct: 774 GLDQDTFMTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTTRNGNVVAS 832



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 7/114 (6%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDH 660
             +  +   +L V+  G        E     R G   + +     +   +      + DH
Sbjct: 781 MTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTTRNGNVVASFPVESNDH 840

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTW 711
           + ++ +  KL+  ++  I  + R  +GV L   +  +  +S        +    
Sbjct: 841 IMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKHEKVVSVAKIIDAKDDSEI 894


>gi|326402875|ref|YP_004282956.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301]
 gi|325049736|dbj|BAJ80074.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301]
          Length = 910

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 246/844 (29%), Positives = 380/844 (45%), Gaps = 98/844 (11%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++    E       V++   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 1   MTDTTDQTEGPSGQVPVTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAMQE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      ++KSAR+VG+V+GK HPHGD ++YD+ VR+AQ F  R PLI GQGNFG++DG
Sbjct: 61  AGNTPDKPYRKSARMVGDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTEAR+   A  +L  +D+D VDF+ TY+E DSEP V P+ FPNLL NG +GI
Sbjct: 121 DPPAAMRYTEARLADAAMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGNGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN  EI +A L LI  PE +++ L+  + GPDFPTGGII+  R  I  ++
Sbjct: 181 AVGMATNIPPHNPAEIIDATLHLIAQPEATLDDLMRIVPGPDFPTGGIIL-GRSGIRSAF 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRGG  VRAR  +EE+ +    I+V+E+PYQV K+ L+E+IAEL+ AK I  + D+RD
Sbjct: 240 ETGRGGIVVRARTSIEEIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLRD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   ++    R   P++++  ++  + M+T F +NM  L  G  P+ + L   L  
Sbjct: 300 ESDREGMRMVIELKRDATPEVVLNHLYRFTQMQTGFGINMLALD-GGRPRQLGLRDALDC 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------- 412
           ++A R +V+ RRS F +     R  +L GL IA  NIDE+IA+IR               
Sbjct: 359 FIAFREDVILRRSRFELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMAR 418

Query: 413 ------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                              +        LTE Q   IL LRL+ L  LE  +I+SEL  +
Sbjct: 419 DWPAGDVRPLLELIDDHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEV 478

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
                ++  ++ S  ++   +  E+  V+   +         +   +   +     Q  +
Sbjct: 479 GRRIGELLEIIASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQDDESLIEPGQMVV 538

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
                  +  +     R+        +A   +  D +  + +AHT   +L  S  GKA+ 
Sbjct: 539 TMTRDGFIKRTPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAFR 598

Query: 575 LPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIV 626
                L       +  AI  ++   +   +                 L+  ++ GN    
Sbjct: 599 EKVWRLPESAPAAKGRAIVNILPELNGDAVTAVLPLPQDESLWNDLHLVFATASGNVRRN 658

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEM-S 682
             ++       G   +K+   +++  V     GD V +     + + F I    +     
Sbjct: 659 RLADFRNVRSTGLIAMKLDDGDRLIGVATCREGDDVFLATRQARCIRFQITDDTLRVFAG 718

Query: 683 R-GKGVRLQSYKDGGISDVICF------KICE---------------------------- 707
           R   GVR      G     +         + E                            
Sbjct: 719 RDSSGVRGIRLGAGDEVISLSVLRHVEASVDERAAYLKYAAAQRRAGGEEGELDAVESDE 778

Query: 708 ------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                                 +      + +  +     +  RGG G        R+G+
Sbjct: 779 AAADIQLTPERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNGR 838

Query: 750 FLSS 753
            +++
Sbjct: 839 AVAA 842



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG----KTFLKVSSEEKMKLVVKV-TGDHVAVV 664
           +   +L V++ G   +    E     R G       L   +   +     V  GD + +V
Sbjct: 796 AEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNGRAVAASFPVRPGDDIMLV 855

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            +  KL+   +DQ+    R   GV L   +       +   + +G
Sbjct: 856 TDQGKLIRAPVDQVRITGRQAMGVTLVRVEKDEQVTSVFPVLDDG 900



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/95 (10%), Positives = 27/95 (28%), Gaps = 2/95 (2%)

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD-GGISDVICFKICEG 708
              ++   + +  V       + S  +     RG +G+   +     G +    F +  G
Sbjct: 790 IAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNGRAVAASFPVRPG 849

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
              +    +            +  R  +G  + + 
Sbjct: 850 DDIMLVTDQGKLIRAPVDQVRITGRQAMGVTLVRV 884


>gi|254461178|ref|ZP_05074594.1| DNA gyrase, A subunit [Rhodobacterales bacterium HTCC2083]
 gi|206677767|gb|EDZ42254.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium HTCC2083]
          Length = 920

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 255/835 (30%), Positives = 403/835 (48%), Gaps = 110/835 (13%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     +++KSAR 
Sbjct: 25  SISITQEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEAGNTHEKSYRKSARA 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D++ VDF+D Y+ +D EP V P+++PN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 PAAFLLSDIDKETVDFQDNYDGKDREPTVLPARYPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A LALI+NP+++ E+L+ Y+ GPDFPTGGI++  R    ++Y  GRG   +R++  V
Sbjct: 205 VVTATLALIENPDLTTEELIAYVPGPDFPTGGIML-GRSGARKAYLEGRGSVVIRSKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV KS +IEKIAE +  K+I  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRYAIVIDEIPYQVNKSTMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  +F  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++
Sbjct: 324 DATPEVVLNQLFRFTSMQTYFGCNMLALN-GGRPETLTLRRFLTSFIDFREDVVARRTAY 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------------------- 412
            ++    R  IL GL +A  N+DE++A IR+                             
Sbjct: 383 ELRKARERSHILCGLAVAVTNVDEVVATIRSSADAAEAREKLKTRRWPAIEIAEYINLID 442

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               K      ++L+E Q  AIL LRL+ L ++   ++  EL  L  +  +   +L S  
Sbjct: 443 DPTHKMNDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELKLLAGKIREYLEILGSRD 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ EV+E F+       RRT   + S   +    + +IE+E + V I++ G+
Sbjct: 503 RIMAIIRDELSEVREKFAVP-----RRTEIVDWSGDME---DEDLIEREDMVVTITSGGY 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     ++ +  K+ D +     A+T  ++L  +TDG +Y L    L 
Sbjct: 555 IKRTPLIDFRAQRRGGKGVAGMQTKDEDVITTLFVANTHTQLLFFTTDGMSYKLKTWRLP 614

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S G     + S+   
Sbjct: 615 LGGRTAKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQVVFATSAGTVRRNKLSDFTN 674

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
             R GK  +K         +  V      D V +V  + + + F    +    SR   GV
Sbjct: 675 VMRNGKIAMKFEGEHEGTTLIDVRIASNDDDVMLVTNSGRAIRFRATDVRVFNSRASTGV 734

Query: 688 RLQSYKDGGISDVICF-------------------------------KICEGL------- 709
           R    +       +                                    EG        
Sbjct: 735 RGIKLQGKDTVVSMSVIRHFEATSDERAAYLKMRRAMAGLADDAELPDEEEGDANSQITQ 794

Query: 710 -----------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                        +        +  +     L  RGG+G        R G+ ++S
Sbjct: 795 ERYAEMSAIENLILTITSGGAGKLSSSHDYPLRGRGGMGVTAMDKSMRGGEVVAS 849



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 6/107 (5%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGE 666
              +L ++S G   +    +     R G     +       ++     V   D + +   
Sbjct: 804 ENLILTITSGGAGKLSSSHDYPLRGRGGMGVTAMDKSMRGGEVVASFPVELDDQIMLATS 863

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTW 711
             + +   +D I   SR   GV++ +  K+  +  V           
Sbjct: 864 KGQSIRVPVDGISFRSRSAGGVKVFNTGKNESVVSVAWIADQGDDEL 910



 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            +++ G      + +       G  +  +       ++V +F  +   ++++ +SKG + 
Sbjct: 809 TITSGGAGKLSSSHDYPLRGRGGMGVTAMDKSMRGGEVVASFPVELDDQIMLATSKGQSI 868

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
            V    I   +R   G         E +  V  +   
Sbjct: 869 RVPVDGISFRSRSAGGVKVFNTGKNESVVSVAWIADQ 905


>gi|119953223|ref|YP_945432.1| DNA gyrase subunit A [Borrelia turicatae 91E135]
 gi|119861994|gb|AAX17762.1| DNA gyrase subunit A [Borrelia turicatae 91E135]
          Length = 815

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 239/762 (31%), Positives = 411/762 (53%), Gaps = 28/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    
Sbjct: 9   EEDKEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADK 68

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           AFKK+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F  RYP++SGQGNFG+IDGD  AA R
Sbjct: 69  AFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM ++AE +++ +D   VDFR  Y++   EP V P+ FP LL NG+SGIAVGMAT+
Sbjct: 129 YTEARMAKIAEELVKDIDRQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +  HN++EIC+A + ++++  +S+  L+  + GPDFPT   I+ + ES+V++Y  G+G  
Sbjct: 189 MAPHNLREICDAIVYMLNHDSVSVYDLIAIVKGPDFPTYAEIIYN-ESLVKAYTTGKGSV 247

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R+R+ +EE       I++T+IPY V KS L+ KIA LI  +++  + DIRDES  +  
Sbjct: 248 VIRSRYHIEEKREDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGISDIRDESDREGI 307

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  DP ++M  ++  +++   F +N   L    +P+ + L  ++ E++ HR+E
Sbjct: 308 RIVLEIKKGFDPHVVMNLLYEYTELRKNFSINNLALV-NGIPKQLNLKELISEFIDHRKE 366

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           ++ RR  F ++    +  IL+GL I+  +ID +I IIR        K  ++  F+L+E Q
Sbjct: 367 IVRRRVEFDLKKARDKAHILEGLNISLRHIDRVIEIIRFSRLVKDAKECIIKEFNLSEIQ 426

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            ++IL+++L+ L  LE  +++ E   +L   +  + +L S ++  N +  EI  +   F 
Sbjct: 427 ANSILDMKLQKLTSLEIEKLEEEFKIVLDLIKDYEDILVSPERVVNIVREEIINLSLKFG 486

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                  RRT           T    ++++E + V+++ +G+I+ +              
Sbjct: 487 DE-----RRTKII-YDEEVLKTSMSDLMQRENVIVILTKQGFIKRILQDEYKLQGIGGKG 540

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLN 597
           L +   ++ D + IAL  +T D +L++S +GK Y + A  +       +   +   I+L 
Sbjct: 541 LGSFDLQDKDQVNIALCVNTHDFLLMISNEGKLYVINAYGIKDSSRTSKGQNIRELINLG 600

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             ++I+     +       LL+ ++ G    +E         +G   +K+  ++ +    
Sbjct: 601 ETEEILAIKNCNELSLDNYLLITTANGKIARIETEGFKTVKSRGVIVIKLDDKDFVTSAE 660

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWI 712
            V+  D +  + +      F+ + I    RG +GV     ++G +  +      +G   +
Sbjct: 661 IVSKNDKIICISKKGNAFAFNSNDIRLTHRGTQGVSGMKVREGDML-IKALSAKQGSHLL 719

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF-PRSGKFLSS 753
             +   Y +          KRG  G    K    ++G  + +
Sbjct: 720 IVSENGYGKRLEISRVTELKRGATGYTCYKKSDEKAGAVVDA 761



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 66/173 (38%), Gaps = 7/173 (4%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S  +  +   + D +  A      D+I+ +S  G A+   + ++       + +   + +
Sbjct: 642 SRGVIVIKLDDKDFVTSAEIVSKNDKIICISKKGNAFAFNSNDIRLTHRGTQGV-SGMKV 700

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MK 651
                ++ A        LL+VS  G    +E S +    R    +      ++     + 
Sbjct: 701 REGDMLIKALSAKQGSHLLIVSENGYGKRLEISRVTELKRGATGYTCYKKSDEKAGAVVD 760

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +     D + +V +  K+L   +D+I E  +  +G+++ S  +  +  V  F
Sbjct: 761 AITVAQDDEILLVSKTSKVLRTLVDKISEQGKDARGMQVLSLDEDKLMSVSKF 813


>gi|83952094|ref|ZP_00960826.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM]
 gi|83837100|gb|EAP76397.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM]
          Length = 906

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/834 (31%), Positives = 403/834 (48%), Gaps = 111/834 (13%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 1   MTIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM + 
Sbjct: 61  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +++D V+F+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 121 ASALLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALIDNP++S E+L++Y+ GPDFPTG I++  R    ++Y  GRG   +RA+  VE
Sbjct: 181 VDATLALIDNPDLSSEELIDYVPGPDFPTGAIML-GRSGARKAYLEGRGSVIIRAKTRVE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ R  W IV+ EIPYQV K+ +IEKIAE    KRI  +  ++DES  +   V+    R 
Sbjct: 240 EIRRDRWAIVIDEIPYQVNKASMIEKIAEAAREKRIEGIAHVQDESDRNGVRVVVELKRD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++  +F  + M+T F  NM  L+ G  P+ + L G L  ++A R EV+ RR+++ 
Sbjct: 300 ATAEVVLNQLFRFTPMQTSFGCNMLALN-GGRPEQLTLRGFLTAFIAFREEVVARRTAYD 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------------------------- 412
           ++    R  IL GL +A  N+DE++A IR+                              
Sbjct: 359 LRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAGDILEYIALIDD 418

Query: 413 --PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              +      ++L+E Q  AIL LRL+ L +L   ++  EL  L A+ ++  ++L S ++
Sbjct: 419 PTHRANDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELQELAAKIKEYLAILASRER 478

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               IA E+REV++ F+       RRT   + S        + +IE+E + V +++ G+I
Sbjct: 479 IMEIIADELREVRDQFAVP-----RRTEITDWSGDMD---DEDLIEREEMVVTVTSGGYI 530

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          K     LS +  KE D +     A+T  ++L  +TDG AY L    L  
Sbjct: 531 KRTALADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQ 590

Query: 583 --GRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
                 G+AI  ++ +     +      D      +  +++  +  G       S+    
Sbjct: 591 GGRTAKGKAIVNILPIPTGVSVAAIMPVDRPEEEWNDLQIVFATDAGTVRRNRLSDFTNV 650

Query: 635 TRKGKTFLKVSSEE---KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVR 688
              GK  +K   E     +         D V +V  + + + F    +    SR   GVR
Sbjct: 651 KSNGKIAMKFEDENAGMSLINARICSEEDDVMLVTNSGRAIRFPTTDVRVFNSRNSVGVR 710

Query: 689 LQSYKDGGISDVICF------------------------------KICEGLT-------- 710
                       +                                   E  T        
Sbjct: 711 GIRLSGEDKVVSMSVIRHFEASSEERVAYLKQRRLMAGLTEDEAASDDEDETAVAGQLSP 770

Query: 711 ------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                        +    +   +  +     +  RGG+G         +G  ++
Sbjct: 771 ERYAEMSAVENLILTITAKGAGKLSSSHDYPVRGRGGLGVTAWTKSMSNGPIIA 824



 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 59/221 (26%), Gaps = 14/221 (6%)

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           R  +  +       + +        + V  S            + LS        S+   
Sbjct: 673 RICSEEDDVMLVTNSGRAIRFPTTDVRVFNSRNSVGVR----GIRLSGEDKVVSMSVIRH 728

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             A + +R+  L        L      S      A+   +      ++           +
Sbjct: 729 FEASSEERVAYLKQRRLMAGLTEDEAASDDEDETAVAGQLSPERYAEMSAV-----ENLI 783

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFL---KVSSEEKMKLVVKVT-GDHVAVVGENRKL 670
           L +++KG   +    +     R G       K  S   +     V   D V +     + 
Sbjct: 784 LTITAKGAGKLSSSHDYPVRGRGGLGVTAWTKSMSNGPIIACFPVEMPDQVMLATSKGQS 843

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           +   +D I   SR   GVR+ +         + +    G  
Sbjct: 844 IRIPVDGISFRSRSAGGVRVFNTGKNEEVVSVAWIADRGDE 884


>gi|206603338|gb|EDZ39818.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 816

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 249/752 (33%), Positives = 394/752 (52%), Gaps = 30/752 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   ++  YL Y++S I  RA+PD+RDG KPV RR++ AM EMG+  G  ++KSARIV
Sbjct: 10  VPIDDEMKTAYLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSARIV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+ VRL QPF  RYPLI GQGNFG++DGD+ AA RYTE R+  +
Sbjct: 70  GDVIGKYHPHGDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLEAL 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +E ++  ++E+ V+F   Y+E   EP V P++ P LL NG++GIAVGMAT+IP HN+ EI
Sbjct: 130 SEEMMAELEEETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNITEI 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALIDNP++S++ LL  + GPDFPTGG ++  R  I  + R GRG   +R    +E
Sbjct: 190 IDALLALIDNPDLSVDDLLAIVHGPDFPTGG-LIMGRSGIESALRTGRGSIVMRGVADIE 248

Query: 260 E-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E        I++ EIPYQV K+RLIE+IAEL+    +  + DIRDES  D   V+    R
Sbjct: 249 ESTRADRMAIIIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLKR 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +P +++  ++  + ++T F  N   L   R P ++ L   L  +L+ R++V+ RR+ F
Sbjct: 309 DANPPVVLNRLYAQTPLQTSFGYNFVALVNQR-PMILSLREALAHFLSFRQDVVTRRTLF 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAILNLR 435
           R++    R  IL+GL  A   +D+IIA+IR+   P         +F+ +E Q  AIL++R
Sbjct: 368 RLRKARDRFHILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQFAFSEIQARAILDMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I +E + +      ++ +L S  +    I  E   ++E +  +     R
Sbjct: 428 LQRLTALERDKIDAEYEEVRVLILGLEEILGSRSRLMAVIREEFMALRENYGDA-----R 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           +T        D     ++MI  +P  + ++ +G+I+          +      S +  KE
Sbjct: 483 KTRIV---PEDGEISIESMIPNDPCYITLTYQGYIKRVSHDAYPTQRRGGKGRSGVALKE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTA 605
            D++ I L     + IL  +  GK Y + A  +   +    G+ I+  + L   + +   
Sbjct: 540 DDAVIITLTPTAHETILFFTDIGKVYRVKAHEIPEVQRTARGKPIRGFLPLAPEEKVTRM 599

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                ++    L+ V+  G       S   +  + G   L +   +++  V+    D HV
Sbjct: 600 LNVASFEGERSLVFVTVNGIIKRTALSAYSSIRQSGIIALTLREGDRLAQVLVAEADSHV 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            V       ++F I ++ E  R   GVR    ++          + E         + Y 
Sbjct: 660 LVATRRGMAILFPIHEVTEQGRTASGVRAIRLREEDRV-ADAEIVTETDPVAVVTEKGYG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +        RGG+G  + +G  + G  +S
Sbjct: 719 KRLDVAKFRHQHRGGMGLKISRGAEKIGAVVS 750



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 8/158 (5%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A     +L+ +  G A   P   +        +    I L     +  A +   T  + V
Sbjct: 653 AEADSHVLVATRRGMAILFPIHEVTEQGRTA-SGVRAIRLREEDRVADAEIVTETDPVAV 711

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MKLVVKVTGDHVAVVGENRKLL 671
           V+ KG    ++ ++     R G   LK+S   +     + LV     D + ++       
Sbjct: 712 VTEKGYGKRLDVAKFRHQHRGGMG-LKISRGAEKIGAVVSLVKAGNTDDLTIITSKGVTN 770

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
               +++  M R  +GV +    D              
Sbjct: 771 RVQANELRTMGRSAQGVIVMRLADDDTIVSAVVSPPRE 808


>gi|168035418|ref|XP_001770207.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678584|gb|EDQ65041.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 813

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 231/766 (30%), Positives = 384/766 (50%), Gaps = 28/766 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +  N   +  +  + L    EE Y+AYA+S I  RA+PD RDG KPVHRRI++AM E+GL
Sbjct: 20  AEDNRPQDVRIVPMELHKEAEESYIAYAMSVIVGRALPDCRDGLKPVHRRILYAMHELGL 79

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL++G GNFG++DGD A
Sbjct: 80  SSKKPFKKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRSPLVNGHGNFGSLDGDPA 139

Query: 127 AAYRYTEARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AA RYTE R+  ++E + L  ++ D VDF  T++   +EP V P++ PN+L NG SGIAV
Sbjct: 140 AAMRYTECRLQGLSEAMLLADLELDTVDFIPTFDGSQNEPAVLPARLPNVLLNGASGIAV 199

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A +AL+ NP  ++E+L+E++ GPDFPTGG I+   + I+++YR 
Sbjct: 200 GMATNIPPHNLAEVVDALIALLHNPNATVEELMEHLPGPDFPTGGQIL-GTDGILDAYRF 258

Query: 246 GRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G G   VR +  +E++ R S    ++++E+PYQ  K+ L+EKIA+L+  K +  + DIRD
Sbjct: 259 GHGRLTVRGKASIEQLDRRSNRSAVIISELPYQANKAALVEKIADLVNNKTLEGVSDIRD 318

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      ++    R   P +++ +++  + ++TRF  NM  +  G  P+VM L   L+ 
Sbjct: 319 ESDRFGMRIVIEVKRGAMPKVVLNNLYKYTTLQTRFSCNMVGII-GGEPKVMGLKDFLET 377

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           ++  R  V+ RR+ F+++  + R  I++G+LI   N+D ++ IIR+          +   
Sbjct: 378 FVEFRCSVIERRAKFQLKRAEDRDHIVEGILIGLSNLDGVVKIIRSAKDTAQASEGLQKG 437

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F++T  Q DA+L + LR L  LE  ++K E D L AE   +  LL S  +    I  E  
Sbjct: 438 FNVTPAQADALLAMPLRRLTSLESGKLKEEHDALTAEITDLKQLLESKHRVLQIIEKEAL 497

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVD 539
            +K+ +         +    E++  D    ++ ++       +     G   +    +  
Sbjct: 498 VLKKEYGTPRRTLVEQGRDGEINDIDVIANEETIVTLSEKGYIKRMAAGTFTAQNRGTTG 557

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL--- 596
            S    +  D++       T D +L  S  G  Y++ A  +           L+  +   
Sbjct: 558 KSGGKMRSNDAMSDFFVCRTHDYVLFFSERGIVYSIRAYQIPECSRTSAGNPLVQVVPVP 617

Query: 597 --NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
                  + +   +     L+++++ G       S   +    G   ++++  +++K V 
Sbjct: 618 PGERITSVQSVSDFAEDQYLVMLTTGGYIKRTALSSFASIRSTGIVAIQLTPGDELKWVR 677

Query: 655 -KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE----- 707
                D VA+  +   ++    D    + R  +GVR    +       +           
Sbjct: 678 NAAEEDTVALASQRGMVVCIGCDDDKVLGRATRGVRAMRLRGDDKLTAMDIVPASLVRTG 737

Query: 708 -----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                    +      + +         G  G VG +  K   ++ 
Sbjct: 738 TKKTGAPWLLMVTEDGFGKRVPIKAFPKGVAGRVGVIGCKV--KTD 781


>gi|42560567|ref|NP_975018.1| DNA gyrase subunit A [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492063|emb|CAE76660.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301321261|gb|ADK69904.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 834

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/763 (31%), Positives = 391/763 (51%), Gaps = 34/763 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
              +  + +   + + +L YA+S I  RA+PDL+DG KPVHRRII+AM+++G+      K
Sbjct: 19  HGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHK 78

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYTE
Sbjct: 79  KSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTE 138

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ +++  +++ +D D V F D Y+  + EP       PNLL NGT GIAVGMATSIP 
Sbjct: 139 ARLAKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPP 198

Query: 194 HNVQEICEAALALIDNPEISIEKL-LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN++E+  A  A IDN +I+I+++  ++I+GPDFPTG ++    + + E Y+ GRG   +
Sbjct: 199 HNLKEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSK-MREGYKTGRGSVII 257

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+   EE        VVTEIPYQ  K+++IEKIAEL+  K I  + DIRDES  +   +
Sbjct: 258 RAKIDFEENK-KHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRI 316

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  +PD+++  ++  + +++ F +N+  L+      ++ L  I+K ++  +  V+
Sbjct: 317 IIELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLP-VLLDLKTIIKNYVEFQVSVI 375

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVD 429
            +RS F    + +R  IL+ L IA  N+D++I II+N    +       ++++  E Q  
Sbjct: 376 IKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVELTNKYNFDEEQNK 435

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I  E+ N+      +D L+N+ ++Q N +  ++ E+ + F   
Sbjct: 436 AILDMRLQRLVGLERDKITLEMTNIKERLTYLDVLINTKEEQDNVLKNQLNEIADKFGD- 494

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL------ 543
                RRT   +          + +I      +++S  G+IR +      +         
Sbjct: 495 ----NRRTELID--EELINIEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVS 548

Query: 544 -HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH---N 599
            + +  D + IA      D +L  +  GK Y     N+ S       + ++  LN     
Sbjct: 549 VNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSE 608

Query: 600 QDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
             I       +       L  V+ KG     + SE     R GK  + +   +++  V  
Sbjct: 609 DKITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLVSVFA 668

Query: 656 VTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
            TG   V +  E+ K++      +   SR G GVR    +D  +  V      +      
Sbjct: 669 TTGQDTVFIANESGKVIRIKESVVNPQSRVGGGVRALKLEDDDVV-VGAISSFKLTHITT 727

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF---LSS 753
            + +   +        +  R G G  V     R+GKF   + +
Sbjct: 728 VSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKFKAIIGA 770


>gi|251792942|ref|YP_003007668.1| DNA topoisomerase IV subunit A [Aggregatibacter aphrophilus NJ8700]
 gi|247534335|gb|ACS97581.1| hypothetical protein NT05HA_1220 [Aggregatibacter aphrophilus
           NJ8700]
          Length = 750

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 271/753 (35%), Positives = 446/753 (59%), Gaps = 24/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S     E ++ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MTDSINY--EGIEQMPLRHFTERAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G +D   
Sbjct: 59  LNAAAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVDDPK 118

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VD++  ++    EP   P++ P++L NGT+GIA
Sbjct: 119 SFAAMRYTESRLSKISEVLLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIA 178

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+ +++ LL  + GPDFPT   I+  +E I + Y+
Sbjct: 179 VGMATDIPPHNINEIADAAVMLLDNPKTTLDDLLTVVQGPDFPTEAEIISPKEEIHKIYQ 238

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P++EDIRDE
Sbjct: 239 QGRGSIKMRAAWKKEDGE-----IIISALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDE 293

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +   RIV+ P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 294 ADHENPVRIVIVPRSNRVDTDAMMAHLFATTDLEKSYRVNMNMIGLDYKPAVKNLLEILT 353

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED+PK  +++RF+
Sbjct: 354 EWLTFRRTTVTRRLQYRLDKVLARLHILQGLMIAFLNIDEVIEIIRHEDEPKAELMARFN 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AILNLRLR L KLEE+Q+++E   L  E+  ++ +L S ++    +  EI++ 
Sbjct: 414 LSDAQAEAILNLRLRHLAKLEEHQLQAEQAELEKERSSLEEILGSERRLNTLLKKEIQQD 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++       RR+   E + A KA  +  M+  EP+TV++S  GW+R  K H +D   
Sbjct: 474 AKTYASP-----RRSPLVERAEA-KAIAENEMLPTEPVTVILSEMGWVRCAKGHDIDPQG 527

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD      +  +    + + + G++Y L   +L S R  GE +   + L     I
Sbjct: 528 LNYKAGDKYLAHAYGKSNQPAVFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATI 587

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               + +    LL+ S  G  FI + ++++A  + GK  + +    K+   + +      
Sbjct: 588 DQLLIENEDQPLLMASDAGYGFICKFADLVARNKAGKALISLPENAKVLPPLTLKNPTAL 647

Query: 663 VV--GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DS 714
           +V      ++LIF +  +PE+S+GKG ++ +      K      V    I E  + +  S
Sbjct: 648 LVALTSAGRMLIFPVQDLPELSKGKGNKIVTIPSANAKARSELLVRLLLIEENSSLVFHS 707

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
             R       DL  +  +RG  G+ +P+G   +
Sbjct: 708 GKRKVTLKPEDLQKFRAERGRKGTQLPRGLHSN 740


>gi|260583322|ref|ZP_05851096.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae NT127]
 gi|260093635|gb|EEW77549.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae NT127]
          Length = 747

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 275/749 (36%), Positives = 434/749 (57%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 ASP-----RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 651 TSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRTERGRKGSTLPRGLHTN 739


>gi|257464718|ref|ZP_05629089.1| DNA topoisomerase IV subunit A [Actinobacillus minor 202]
 gi|257450378|gb|EEV24421.1| DNA topoisomerase IV subunit A [Actinobacillus minor 202]
          Length = 747

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 445/750 (59%), Gaps = 24/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN   +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSNE-IINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L+  A + K+AR VG+V+GK HPHGD + Y ++V +AQ F  RYPLI GQGN+G+++ D 
Sbjct: 60  LNATAKYAKAARTVGDVLGKFHPHGDSACYGAMVGMAQDFTFRYPLIDGQGNWGSLE-DD 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAAYRYTEAR+T++A ++L  +D+  VDF+  ++    EPV FPS+ P++L NG++GIAV
Sbjct: 119 AAAYRYTEARLTKIAAILLSELDQGTVDFKPNFDGSKVEPVTFPSRLPHILLNGSTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP HN+ EI EA++ L++NP+ ++  LL  + GPD+PT   I+  +  I + Y  
Sbjct: 179 GMATDIPPHNINEIAEASVMLLENPKATLSDLLTVVQGPDYPTEAEIITPKSDIAKIYEQ 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  R+RA W  E+       IV+  +P+Q   S++I +IA+ +  K++P+++DIRDES
Sbjct: 239 GRGSIRMRAVWSKEDGE-----IVIQALPHQASPSKIIAQIADQMRNKKLPMVDDIRDES 293

Query: 306 AEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
             +   RIV+ P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL E
Sbjct: 294 DHENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHEILTE 353

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL+ RR  + RR + ++  I  R+ IL GL+IA+LNIDE+I+IIRNED+PK V+++RF+L
Sbjct: 354 WLSFRRSTVTRRLNDKLDKILNRLHILDGLMIAFLNIDEVISIIRNEDEPKAVLMARFNL 413

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q +AILNLRLR L KLEE+++++E + L +E++++  +L S ++    I  EI+   
Sbjct: 414 SDIQAEAILNLRLRHLAKLEEHELQAEKNQLESERDELRLILGSERRLNTLIKKEIQADA 473

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F+       RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L
Sbjct: 474 KTFADP-----RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVEGL 527

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            ++ GD         +   ++ L + G+ Y L   +L S R  GE +   I L     + 
Sbjct: 528 SYRAGDGYLAHTRGRSNQPVVFLDSTGRTYALDPTSLPSARSQGEPLTGKITLPEGATVE 587

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--- 660
              +     K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    
Sbjct: 588 QVLMAAPETKVLMASDSGYGFICTFEDLVSRNKAGKAVISLTENAKVLAPQLIDNEEDIS 647

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWIDSA 715
           +  +    ++L+F + ++P +S+GKG ++ +      K+          I    + +  +
Sbjct: 648 LVAMSSAGRMLVFPLAELPILSKGKGNKIINISAQAAKERSELLARLLLIKANQSLVFVS 707

Query: 716 G-RSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           G R      +D+  + G+R   GS + +G 
Sbjct: 708 GKRKITLKPSDIDNYRGERARKGSQLVRGL 737


>gi|119944625|ref|YP_942305.1| DNA topoisomerase IV subunit A [Psychromonas ingrahamii 37]
 gi|119863229|gb|ABM02706.1| DNA topoisomerase IV subunit A [Psychromonas ingrahamii 37]
          Length = 759

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 279/757 (36%), Positives = 430/757 (56%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN   L  E V+ + L    EE YL YA+  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSNLLDLSLEGVEKLPLTKFTEEAYLNYAMYVIMDRALPHISDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   
Sbjct: 61  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R++  +EL+L  V     D++  ++    EPV+ P++ P++L NG SGIA
Sbjct: 121 SFAAMRYTESRLSAFSELLLSEVALGTTDWKPNFDGTMKEPVLLPARLPHILLNGISGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   LID+P+ ++  L+ ++ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVREVAAACCHLIDHPKANLIDLMAFVQGPDYPTEAEIITPNSDIKKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG F+ RA + VE     +  IV+T +P++V   +++++IA+ +  K++P++ D+RDE
Sbjct: 241 TGRGSFKSRAVYTVE-----NGEIVITALPHRVSGGKILKEIAKQMQDKKLPMIADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E    +N+N+L + + PQV  L  IL 
Sbjct: 296 SDHENPTRLVIIPRSNRIDIEGLMHHLFASTDLEVNHKVNLNMLGLDQRPQVKGLVTILN 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R + + RR  FR+  I  R+ IL+GLL AYLNIDE+I IIR  D  K  ++SRF 
Sbjct: 356 EWLVYRMKTVRRRLQFRLDKILARLHILEGLLAAYLNIDEVIEIIRTCDDAKAELMSRFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q  AIL ++LR L KLEE QI++E+D L  E+ K++ LL+S ++    +  EI+  
Sbjct: 416 LSAIQAHAILEIKLRQLAKLEEIQIRAEMDTLTDEQTKLERLLSSERRLNTLVKKEIQAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RR+   E   A   T ++ M   E +TVV+S +GW+RS K   VD  A
Sbjct: 476 ALKYGD-----DRRSPLIERIEAKALTEKELM-PSETVTVVLSTQGWVRSAKGLDVDAQA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD         +    + +   G+AY+L   +L S R  GE +    + N N   
Sbjct: 530 LNYKSGDEFLTKAQGRSNQSCIFIDASGRAYSLDVHSLPSARSQGEPLTGRFNQNENVPF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---VTGD 659
           V A + D   + L+ S  G  FI + S+I +  + GKT + ++   ++    K      D
Sbjct: 590 VCALIGDDDDRYLISSDHGYGFIAKFSDINSRNKNGKTLINLTPNAQLMPPKKMTAADDD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY------KDGGISDVICFKICEGLTWID 713
               +    +LL+F ++ +P +S+GKG R+ +       K      ++          + 
Sbjct: 650 WCLTISNEGRLLLFPVNSLPSLSKGKGNRMLNIISAKATKREEFVTMLEIIPQASSVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL+ + G+RG  GS +P+G  R  K 
Sbjct: 710 AGKRKLTLKPSDLVHYQGERGRRGSKLPRGLQRVDKI 746


>gi|203284343|ref|YP_002222083.1| DNA gyrase, subunit A [Borrelia duttonii Ly]
 gi|201083786|gb|ACH93377.1| DNA gyrase, subunit A [Borrelia duttonii Ly]
          Length = 815

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 414/760 (54%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E V  + +   +   YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    +F
Sbjct: 11  NKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDKSF 70

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F  RYP++SGQGNFG+IDGD  AA RYT
Sbjct: 71  KKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMRYT 130

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM ++AE ++  +D+  V+F+  Y++   EP V P+ FP LL NG+SGIAVGMAT++ 
Sbjct: 131 EARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATNMA 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+C+A + ++++ ++SI  L+  I GPDFPT   I+ + E+++++Y  G+G   +
Sbjct: 191 PHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYN-ENLIKAYTTGKGSVVI 249

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+ +EE    +  I++T+IPY V KS L+ KIA LI  +++  + DIRDES  +   +
Sbjct: 250 RARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIRI 309

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  DP ++M  ++  +++   F +N   L    +P+ + L  ++ E++ HR+ +L
Sbjct: 310 VLEIKKGFDPHVVMNLLYEYTELRRNFSINNLALV-NGIPKQLNLRELISEFIEHRKNIL 368

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR  F ++    +  IL+GL IA  NID +I IIR        +  ++  F L+E Q +
Sbjct: 369 RRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMREFQLSEIQAN 428

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           +IL+++L+ L  LE  +I+ +   +LA  +  + +L S  +  N I  EI  +   F   
Sbjct: 429 SILDMKLQKLTSLEVAKIEEDFQVVLALIKDYEDILISPSRIVNMIREEIINLSLKFGD- 487

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    ++++E + V+++ +G+I+ +              L 
Sbjct: 488 ----DRRTKII-YDEEVLKTSMSDLMQRENVIVILTKQGFIKRVLQDEYKLQGIGGKGLG 542

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHN 599
           +   ++ D + +AL  +T D +L++S +GK Y + A      S    G+ I+ LI+L   
Sbjct: 543 SFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIKDSSRTSRGQNIRELINLGEK 602

Query: 600 QDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+             LL+ ++ G    +E         +G   +K+  ++ +     V
Sbjct: 603 EEILAIKNCSELSVDNYLLITTANGKIARIETEGFKTVKSRGVIIMKLDDKDFVTSAEIV 662

Query: 657 T-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +  D +  + +      FS + I    RG +GV     ++G +  +    I +G   +  
Sbjct: 663 SRDDKIICISKKGNAFAFSSNDIRLTHRGTQGVSGMKVREGDML-IKALAIKQGSHLLIM 721

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF-PRSGKFLSS 753
           +   Y +          KRG  G    K    ++G+ + +
Sbjct: 722 SENGYGKRLEVSKVTGLKRGSTGYTCYKKSDEKAGEVVDA 761



 Score = 63.3 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 70/173 (40%), Gaps = 7/173 (4%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S  +  +   + D +  A      D+I+ +S  G A+   + ++       + +   + +
Sbjct: 642 SRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIRLTHRGTQGV-SGMKV 700

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKL 652
                ++ A        LL++S  G    +E S++    R    +      ++    +  
Sbjct: 701 REGDMLIKALAIKQGSHLLIMSENGYGKRLEVSKVTGLKRGSTGYTCYKKSDEKAGEVVD 760

Query: 653 VVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            + V+  D + ++ ++ K+L   +D+I E  +  +G+++ S  +  +  V  F
Sbjct: 761 AITVSQDDEILLISKSSKVLRTLVDKISEQGKDARGMQVLSLDEDKLVAVSKF 813


>gi|315633997|ref|ZP_07889286.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aggregatibacter segnis
           ATCC 33393]
 gi|315477247|gb|EFU67990.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aggregatibacter segnis
           ATCC 33393]
          Length = 750

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 270/753 (35%), Positives = 443/753 (58%), Gaps = 24/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S     E ++ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MTDSINY--EGIEQMPLRHFTERAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G +D   
Sbjct: 59  LNAAAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVDDPK 118

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VD++  ++    EP   P++ P++L NGT+GIA
Sbjct: 119 SFAAMRYTESRLSKISEVLLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIA 178

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+ ++  LL  + GPDFPT   I+  +E I + Y+
Sbjct: 179 VGMATDIPPHNINEIADAAVMLLDNPKTTLNDLLTVVQGPDFPTEAEIISPKEEIRKIYQ 238

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P++EDIRDE
Sbjct: 239 QGRGSIKMRAAWKKEDGE-----IIISALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDE 293

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +   RIV+ P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 294 ADHENPVRIVIVPRSNRVDTDAMMAHLFATTDLEKSYRVNMNMIGLDYKPAVKNLLEILT 353

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED+PK  +++RF+
Sbjct: 354 EWLTFRRTTVTRRLQYRLDKVLARLHILQGLMIAFLNIDEVIEIIRHEDEPKAELMARFN 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AILNLRLR L KLEE+Q+++E   L  E+  ++ +L S ++    +  EI++ 
Sbjct: 414 LSDAQAEAILNLRLRHLAKLEEHQLQAEQAELEKERSSLEEILGSERRLNTLLKKEIQQD 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++       RR+   E + A KA  +  M+  EP+TV++S  GW+R  K H +D   
Sbjct: 474 AKTYASP-----RRSPLVERAEA-KAIAENEMLPTEPVTVILSEMGWVRCAKGHDIDPQG 527

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD      +  +    + + + G++Y L   +L S R  GE +   + L     +
Sbjct: 528 LSYKAGDKYLAHAYGKSNQPAVFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATV 587

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               + +    LL+ S  G  FI + ++++A  + GK  + +    K+   + +      
Sbjct: 588 DQLLIENEDQPLLMASDAGYGFICKFADLVARNKAGKALISLPENAKVLPPLTLKNPTAL 647

Query: 663 VV--GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DS 714
           +V      ++LIF    +PE+S+GKG ++ +      K      V    I E  + +  S
Sbjct: 648 LVALTSAGRMLIFPAQDLPELSKGKGNKIVTIPSANAKARSELLVRLLLIEENSSLVFHS 707

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
             R       DL  +  +RG  G+ +P+G   +
Sbjct: 708 GKRKVTLKPEDLQKFRAERGRKGTQLPRGLHSN 740


>gi|88608652|ref|YP_506822.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama]
 gi|88600821|gb|ABD46289.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama]
          Length = 869

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/798 (30%), Positives = 400/798 (50%), Gaps = 64/798 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V+L   L+  YL+YA+S I  RAIPD+RDG KPVHRRI+++M+E+   +   ++KSA
Sbjct: 4   IIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R++GEVIGK HPHGD ++YD+LVR+AQ F    PLI GQGNFG+IDGD AAA RYTE R+
Sbjct: 64  RVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +++ +L  + E++VDFR  Y+  ++EPVV P+KFPN+L NGT+G+AVGMAT++P+HN+
Sbjct: 124 EYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ EA    ++N  ++ ++LL+ I GPDFPTGG ++   E I  S+  GRG   +R++ 
Sbjct: 184 SEVIEACKLYLENNNVTTDELLKVIKGPDFPTGG-LIIGEEGIKASFESGRGSIIIRSKT 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE   G   I+V E+PYQV K++LIE IA L+  KR+  + D+RDES ++   V+   
Sbjct: 243 HFEETEAG-KAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIEL 301

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++  +F ++ ++T +  NM +L   R P +M L  IL  ++AHR+EV+ RR+
Sbjct: 302 KRGASFEVVLNQLFQMTQLQTSYSTNMVLLDNMR-PTLMSLRDILAAFIAHRKEVISRRT 360

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------- 417
            FR+     +  +L  L +A LNIDE++ I+++    +  +                   
Sbjct: 361 EFRLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHWAIDEELELLVE 420

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      + L+  Q  AIL ++++ +   E+ Q+ +E+   +   ++  S+L S  
Sbjct: 421 TISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGSEA 480

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ-AMIEKEPITVVISNRG 528
              N I  E+ E+K  + ++      +      +  D    +Q  +       +   +  
Sbjct: 481 VLTNVIVRELNEIKAKYPQARKSIILKNVNAVYAEEDLIEREQVVVTATYSGYIKRVHIS 540

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
             R  +       A + K  D L       T D IL  S+ GK Y L A  L     +  
Sbjct: 541 NYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKLKAYKLPIGEPQSR 600

Query: 587 GEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G A+  + DL  ++ I +           L+ ++++G       S+       GK  +++
Sbjct: 601 GRALVNIFDLADDESITSILPLKSSDAENLIFLTAQGKVKRNSMSDFAYVPANGKVAIRL 660

Query: 645 SSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVI 701
           +  + +  V     +  V +   + K + F +  +  + SR   GV+  +      +  +
Sbjct: 661 NDNDALISVKTAQNEDCVFISTRDGKCIRFLVGDLRVLKSRSSEGVKAITLGKDDNAISL 720

Query: 702 CF--------------------------KICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
                                       +  E    +      Y +  +     +  RGG
Sbjct: 721 SILNKQVLSPEDKAEYMKTKFFERIQNPENHEEQFVLTVTENGYGKITSSYEYRITNRGG 780

Query: 736 VGSLVPKGFPRSGKFLSS 753
           VG +      R+GK +SS
Sbjct: 781 VGIINISTSERNGKVVSS 798



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
               +L V+  G   I    E     R G   + +     + + +        +H+ +V 
Sbjct: 752 EEQFVLTVTENGYGKITSSYEYRITNRGGVGIINISTSERNGKVVSSFKVTLSNHIMLVT 811

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLT 710
              +++    + IP + R  +GVRL S + +  ++ V   +  E   
Sbjct: 812 NRGQVIRIEANNIPVLGRNTQGVRLFSIRAEERVASVTEVEEVEDDD 858


>gi|203287877|ref|YP_002222892.1| DNA gyrase, subunit A [Borrelia recurrentis A1]
 gi|201085097|gb|ACH94671.1| DNA gyrase, subunit A [Borrelia recurrentis A1]
          Length = 815

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 414/760 (54%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E V  + +   +   YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    +F
Sbjct: 11  NKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDKSF 70

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F  RYP++SGQGNFG+IDGD  AA RYT
Sbjct: 71  KKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMRYT 130

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM ++AE ++  +D+  V+F+  Y++   EP V P+ FP LL NG+SGIAVGMAT++ 
Sbjct: 131 EARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATNMA 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+C+A + ++++ ++SI  L+  I GPDFPT   I+ + E+++++Y  G+G   +
Sbjct: 191 PHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYN-ENLIKAYTTGKGSVVI 249

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+ +EE    +  I++T+IPY V KS L+ KIA LI  +++  + DIRDES  +   +
Sbjct: 250 RARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIRI 309

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  DP ++M  ++  +++   F +N   L    +P+ + L  ++ E++ HR+ +L
Sbjct: 310 VLEIKKGFDPHVVMNLLYEYTELRRNFSINNLALV-NGIPKQLNLRELISEFIEHRKNIL 368

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR  F ++    +  IL+GL IA  NID +I IIR        +  ++  F L+E Q +
Sbjct: 369 RRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMREFQLSEIQAN 428

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           +IL+++L+ L  LE  +I+ +   +LA  +  + +L S  +  N I  EI  +   F   
Sbjct: 429 SILDMKLQKLTSLEVAKIEEDFQVVLALIKDYEDILISPSRIVNMIREEIINLSLKFGD- 487

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    ++++E + V+++ +G+I+ +              L 
Sbjct: 488 ----DRRTKII-YDEEVLKTSMSDLMQRENVIVILTKQGFIKRVLQDEYKLQGIGGKGLG 542

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHN 599
           +   ++ D + +AL  +T D +L++S +GK Y + A      S    G+ I+ LI+L   
Sbjct: 543 SFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIKDSSRISRGQNIRELINLGEK 602

Query: 600 QDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+             LL+ ++ G    +E         +G   +K+  ++ +     V
Sbjct: 603 EEILAIKNCSELSVDNYLLITTANGKIARIETEGFKTVKSRGVIIMKLDDKDFVTSAEIV 662

Query: 657 T-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +  D +  + +      FS + I    RG +GV     ++G +  +    I +G   +  
Sbjct: 663 SRDDKIICISKKGNAFAFSSNDIRLTHRGTQGVSGMKVREGDML-IKALAIKQGSHLLIM 721

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF-PRSGKFLSS 753
           +   Y +          KRG  G    K    ++G+ + +
Sbjct: 722 SENGYGKRLEVSKVTGLKRGSTGYTCYKKSDEKAGEVVDA 761



 Score = 63.3 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 70/173 (40%), Gaps = 7/173 (4%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S  +  +   + D +  A      D+I+ +S  G A+   + ++       + +   + +
Sbjct: 642 SRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIRLTHRGTQGV-SGMKV 700

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKL 652
                ++ A        LL++S  G    +E S++    R    +      ++    +  
Sbjct: 701 REGDMLIKALAIKQGSHLLIMSENGYGKRLEVSKVTGLKRGSTGYTCYKKSDEKAGEVVD 760

Query: 653 VVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            + V+  D + ++ ++ K+L   +D+I E  +  +G+++ S  +  +  V  F
Sbjct: 761 AITVSQDDEILLISKSSKVLRTLVDKISEQGKDARGMQVLSLDEDKLVAVSKF 813


>gi|331703027|ref|YP_004399714.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801582|emb|CBW53735.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 834

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/763 (31%), Positives = 392/763 (51%), Gaps = 34/763 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
              +  + +   + + +L YA+S I  RA+PDL+DG KPVHRRII+AM+++G+      K
Sbjct: 19  HGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHK 78

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYTE
Sbjct: 79  KSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTE 138

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ +++  +++ +D D V F D Y+  + EP       PNLL NGT GIAVGMATSIP 
Sbjct: 139 ARLAKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATSIPP 198

Query: 194 HNVQEICEAALALIDNPEISIEKL-LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN++E+  A  A IDN +I+I+++  ++I+GPDFPTG ++    + + E Y+ GRG   +
Sbjct: 199 HNLKEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSK-MREGYKTGRGSVII 257

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+   EE        VVTEIPYQ  K+++IEKIAEL+  K I  + DIRDES  +   +
Sbjct: 258 RAKIDFEENK-KHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRI 316

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  +PD+++  ++  + +++ F +N+  L+      ++ L  I+K ++  +  V+
Sbjct: 317 IIELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLP-VLLDLKTIIKNYVEFQVNVI 375

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVD 429
            +RS F    + +R  IL+ L IA  N+D++I II+N    +     + ++++  E Q  
Sbjct: 376 IKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTGEEAKIQLTNKYNFDEEQNK 435

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I  E+ N+      +D L+N+ ++Q N +  ++ E+ + F   
Sbjct: 436 AILDMRLQRLVGLERDKITLEMTNIKERLTYLDILINTKEEQNNVLKNQLNEIADKFGD- 494

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL------ 543
                RRT   +          + +I      +++S  G+IR +      +         
Sbjct: 495 ----NRRTELID--EELINIEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVS 548

Query: 544 -HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH---N 599
            + +  D + IA      D +L  +  GK Y     N+ S       + ++  LN     
Sbjct: 549 VNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSE 608

Query: 600 QDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
             I       +       L  V+ KG     + SE     R GK  + +   +++  V  
Sbjct: 609 DKITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRDNDQLVSVFA 668

Query: 656 VTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
            TG   V +  E+ K++      +   SR G GV+    +D  +  V      +      
Sbjct: 669 TTGQDTVFIANESGKVIRIKESVVNPQSRVGGGVKALKLEDDDVV-VGAISSFKLTHITT 727

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF---LSS 753
            + +   +        +  R G G  V     R+GKF   + +
Sbjct: 728 VSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKFKAIIGA 770


>gi|302326338|gb|ADL25539.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 899

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/799 (30%), Positives = 396/799 (49%), Gaps = 81/799 (10%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   +++ YL Y++S I  RA+PD RDGFKPVHRR++++M ++G+       KSARIVG+
Sbjct: 11  VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGD 70

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VYD+L R+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEA+M  +  
Sbjct: 71  VIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGA 130

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L+ ++++ VD    Y+E   EP+V PS  PN++ NGTSGIAVGMAT++  HN++E+  
Sbjct: 131 LMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGA 190

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A  AL +NP+++ E L+EY+ GPDFPTG  IV  R  I E+Y  G G  RVRAR  +E  
Sbjct: 191 AIHALAENPDLTGEDLMEYVKGPDFPTGA-IVCGRSGIREAYLTGHGRVRVRARTEIETD 249

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            +G   I+VTEIPY V K+ L +KIA+L+  KRI  + DIRDES+ D+RIV     R   
Sbjct: 250 AKGKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRDIRIV-IELRRDAV 308

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            ++++ ++F  + ++T F +    L    +P+++ L  +L+ ++ HR +V+ R + F ++
Sbjct: 309 GEVVLNNLFKYTQLQTTFSIYNLALV-NNLPKLLTLKDLLQVYIDHRLDVITRATQFDLK 367

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRS 438
               R+ I++GL IA  NIDE++ IIR        K  +  RFSL E Q  AI+++RL  
Sbjct: 368 KAAARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDRFSLDEIQSQAIVDMRLAQ 427

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  L   ++++E + L+A    +  +L   +++   +  ++  V + +        RRTT
Sbjct: 428 LVGLNIEKLEAEYNELIATVADLKDILEKRERRVAIMLQKLDAVVDKYGDE-----RRTT 482

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDS 550
             E   A   +  + +I +E   + +S  G+IR                +     K+ D+
Sbjct: 483 IGE---AIDDSDDEDLIAEEEQVITLSKEGYIRRLPIDTFKAQNRGGKGIIGAGLKDEDN 539

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY 608
           ++    A T   +L+ +  G+ Y      L  G  +G+   I   + L   + +      
Sbjct: 540 VEQIFTASTHSYLLVFTNKGRVYWTKVYRLPEGARNGKGRPIVNFVALTEGEKVQAIVPV 599

Query: 609 DSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV------------ 653
                   L+  + KG    ++ +      + G   + +  ++++  V            
Sbjct: 600 RKFGGYFCLVFATKKGIINKMDLTLFSRPRKAGVNAISLDEDDELVKVQLVGMSAEEYEA 659

Query: 654 ----------------------------------------VKVTGDHVAVVGENRKLLIF 673
                                                     +  D + +  +N + + F
Sbjct: 660 SKNASDDDSAEAVENAAEAQAAEAAIAEESESGDAEDFANRPIPKDLLMIATKNGQAVTF 719

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
            I     M RG  GV+  +  +G    +    +  G   +    + Y +        + +
Sbjct: 720 PISCFRAMGRGTHGVKGITLAEGDEV-ISLLWLKAGNKILTITEKGYGKRSEPGSYRVTR 778

Query: 733 RGGVGSLVPKGFPRSGKFL 751
           RG  G        + G  +
Sbjct: 779 RGSKGVRNLNVTDKIGAAV 797



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 7/164 (4%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            A      D +++ + +G+A T P     +    G      I L    ++++     +  
Sbjct: 697 FANRPIPKDLLMIATKNGQAVTFPISCFRAMG-RGTHGVKGITLAEGDEVISLLWLKAGN 755

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD-HVAVVGENR 668
           K+L ++ KG     E        R  K    ++  +K+     V  V  D  + +  ++ 
Sbjct: 756 KILTITEKGYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLIITSKDG 815

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS-DVICFKICEGLT 710
           +++      I    R  +GV+  + +DG +  D       E + 
Sbjct: 816 QVIRIKAADIRLTGRNAQGVKAITLRDGDVVKDATALPSVEDIE 859


>gi|258626884|ref|ZP_05721688.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM603]
 gi|258580807|gb|EEW05752.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM603]
          Length = 761

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 282/751 (37%), Positives = 441/751 (58%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LID+P   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT 
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTG 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGGLLPRGLQRV 741


>gi|229544206|ref|ZP_04433265.1| DNA topoisomerase IV, A subunit [Bacillus coagulans 36D1]
 gi|229325345|gb|EEN91021.1| DNA topoisomerase IV, A subunit [Bacillus coagulans 36D1]
          Length = 815

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 227/748 (30%), Positives = 380/748 (50%), Gaps = 23/748 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E  + + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F
Sbjct: 3   TAERFQDLPLEEVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHVEGNTADKHF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD AAA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSIDGDPAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+  +A  +L  +D++ V F   +++  +EPVV P++FPNLL NG++GI+ G AT IP
Sbjct: 123 EARLAPIASELLHDIDKETVKFIPNFDDTANEPVVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H++ EI + A+  ++NP+ ++E L+  I GPDFPTGG IV+  + I ++Y  G+G   V
Sbjct: 183 PHHLGEIIDGAIMRMENPDCTVEDLMTVIKGPDFPTGG-IVQGIDGIKKAYETGKGKMVV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R R  +EE+  G   IV+ EIPY+V K+ L++KI EL I +++  + ++RDE+      +
Sbjct: 242 RGRTSIEEIRGGRKQIVIAEIPYEVNKANLVKKIDELRIDRKVEGISEVRDETDRTGLRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D D ++  +F  +D++  +     V    R PQ+M L  +L  ++ H++EV+
Sbjct: 302 VIELKKDADADSVLNYLFKNTDLQVSYNF-NMVAIHNRRPQLMGLRELLDAYIEHQKEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            +R+ F ++    R  I+ GL+ A   +DE+IA IR     K    +   +F+ TE Q +
Sbjct: 361 TKRTEFDLKKARDRKHIVDGLMKALSILDEVIAAIRASKDKKDAKANLIAKFAFTEPQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +++E  +L  + E   ++L+S K+ +  I  E+R++++ ++  
Sbjct: 421 AIVTLQLYRLTNTDITTLENEAADLEKKIETYLAILSSEKKLFTVIKKELRDIRKKYAD- 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                RRTT  E    +     +AMI  E + V I+  G+I+     S    +   L  K
Sbjct: 480 ----NRRTTI-EAEIQELKINLEAMIPNEDVMVTITKDGYIKRTSLRSYTASNGRDLAIK 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVT 604
           + D L      +T   +LL +  G    LP   L   R     + +  L+ L  ++ I+ 
Sbjct: 535 DSDRLLFKQQLNTVQTVLLFTNKGSYIYLPVHELPDIRWKDLGQHVSNLVTLERDEGIIK 594

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-D 659
                 ++    +L  +  G A   E  +  A    K    + +  ++++  V    G  
Sbjct: 595 VLPIEDFNQPQFILFFTKNGMAKKTELQQYQAQRYSKALVAINLKGDDEVLDVHLTDGSK 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGR 717
            V +       L F   +I  +  R  GV+  + K+G  +      +  E      +  R
Sbjct: 655 EVFLASRLGYGLRFDEAEISVVGQRAAGVKGMNLKEGDRLVSGKIIEDPEKDKVFIATQR 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +           R   G ++ +   
Sbjct: 715 GAVKKMKVSEFDKTSRAKRGVIMLRELK 742


>gi|152978651|ref|YP_001344280.1| DNA topoisomerase IV subunit A [Actinobacillus succinogenes 130Z]
 gi|150840374|gb|ABR74345.1| DNA topoisomerase IV, A subunit [Actinobacillus succinogenes 130Z]
          Length = 750

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 269/746 (36%), Positives = 435/746 (58%), Gaps = 22/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAA 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+ +++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLAKISEMLLSELGQGTVDYQPNFDGTIAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP  +++ LL  + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNLNEIADAAVMLLDNPHTTLDDLLTVVQGPDFPTEAEIITPKSDIRKLYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       IV+T +P+Q   S++ ++IA+ + AK++P++EDIRDE+ ++
Sbjct: 242 SVKMRAVWKKEDGE-----IVITAVPHQSSPSKIQQQIADQMNAKKLPMVEDIRDEADQE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPVRLVIVPRSNRVDVDALMNHLFATTDLERSYRVNMNMIGLDHKPAVKNLVQILTEWLQ 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR   R+  +  R+ IL GLLIA+LNIDE+I IIR+ED+PK V+++RF L++ 
Sbjct: 357 FRRATVTRRLRHRLDKVLSRLHILDGLLIAFLNIDEVIDIIRHEDEPKTVLMARFKLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILNLRLR L KLEE ++K+E   L  E++ ++ +L+S ++    I  EI++  + +
Sbjct: 417 QAEAILNLRLRHLAKLEETELKAEKARLEEERQHLEQILSSERRLNTLIKKEIQQDAKTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       RR+   E   A KA  +  M+  EP+TV++S  GW+R  K H +D+  L++K
Sbjct: 477 A-----STRRSPLVEREEA-KAISETEMMPAEPVTVILSEMGWVRCAKGHDIDVQNLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD      +  +    + + + G++Y +   +L S R  GE +   ++L     +    
Sbjct: 531 AGDKYLAHAYGKSNQPAVFIDSSGRSYAVDPLSLPSARSQGEPLTGKLNLPAGASMEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           + +    LL+ S  G  FI +  ++IA  + GK  L +    K+     +      +  +
Sbjct: 591 IENENQPLLMASDAGYGFICQFEDLIARNKAGKAVLTLPENAKVLPPKIIKNSTALLLAL 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS-----DVICFKICEGLTWI-DSAGRS 718
               ++L+F + ++P +S+GKG ++               V    I E  + +  S  R 
Sbjct: 651 THAGRMLMFPVQELPSLSKGKGNKIIGIPAADAKVRSDFVVKLLLISENASLVFHSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                 DL  +  +RG  GS +P+G 
Sbjct: 711 ITLKPEDLQKFRAERGRRGSKLPRGL 736


>gi|145642079|ref|ZP_01797650.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
 gi|145273259|gb|EDK13134.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.4-21]
          Length = 747

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 274/749 (36%), Positives = 437/749 (58%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +A + L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADATVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKAEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQASPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIRNED PK  +++RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRNEDDPKTELMARFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L++K
Sbjct: 477 ASP-----RMSQLVEREEA-KMISESEMTPAEPVTVILSEMGWVRCAKGHDIDPKSLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS +      +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDSYRAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MAGEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVIAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD     +    I +  +    S  R 
Sbjct: 651 TSAGRMLIFPAQDLPVLSKGKGNKIITIPAANAKDRSELLIKLLLISDQASLEFHSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRAERGRKGSTLPRGLHTN 739


>gi|258620849|ref|ZP_05715883.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM573]
 gi|258586237|gb|EEW10952.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM573]
          Length = 761

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 283/751 (37%), Positives = 441/751 (58%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ EA + LID+P   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVAEATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT 
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTG 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGGLLPRGLQRV 741


>gi|260576780|ref|ZP_05844765.1| DNA gyrase, A subunit [Rhodobacter sp. SW2]
 gi|259021032|gb|EEW24343.1| DNA gyrase, A subunit [Rhodobacter sp. SW2]
          Length = 907

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 255/833 (30%), Positives = 390/833 (46%), Gaps = 108/833 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   ++  YL YA+S I  RAIPDLRDG KPVHRR++ AM E G      ++KSAR 
Sbjct: 24  QVSISAEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRVLFAMHETGNTSDKPYRKSARP 83

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD S+YD+LVR+AQPF     L+ GQGNFG++DGD AAA RYTE RM +
Sbjct: 84  VGDTMGKYHPHGDASIYDALVRMAQPFSMSLKLLDGQGNFGSMDGDGAAAMRYTEVRMDK 143

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT IP HN+ E
Sbjct: 144 PAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAEGIAVGMATRIPPHNLGE 203

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  LALI NP++S E L+E I  PDFPTG  I+  R    ++Y  GRG   VRA+  +
Sbjct: 204 VIDGTLALIANPDLSTEALMEIIPAPDFPTGATIL-GRSGARKAYLEGRGSIIVRAKTRI 262

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + I++ EIPYQV K+R+IE IAE +  K+I  +  ++DES      V+    R
Sbjct: 263 EEIRKDRFAIIIDEIPYQVNKARMIEIIAEQVREKKIEGIAHVQDESDRIGVRVVIELKR 322

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++  ++  + M+  F  NM  L+ G  P+ + L   L  ++  R EV+ RR++F
Sbjct: 323 DATADVVLNQLYRFTPMQISFACNMLALN-GGRPEQLALRDFLTHFITFREEVVARRTAF 381

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------------- 415
            ++    R  IL GL +A  N+DE++A IR+   P                         
Sbjct: 382 ELRKARERSHILCGLAVAVANVDEVVATIRSSADPAEARERLMTRRWPAGEIIPFIKLID 441

Query: 416 ------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   +I  EL +L  +      +L S  
Sbjct: 442 DPTHKVNEDGTYNLSEIQARAILDLRLQRLTAMGVKEITDELLDLAGKIRDYLEILGSRD 501

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+ E++ +F+       RRT   + S   +    + +IE+E + V I++ G+
Sbjct: 502 RIMAIISTELAEMRALFAVP-----RRTEIVDWSGDME---DEDLIEREDMVVTITSGGY 553

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+                L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 554 IKRTPLAEFRSQNRGGKGLASMSTKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 613

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
               +  G+AI  ++ +     I      D       + +++  +S G+    + S+   
Sbjct: 614 LAGRQAKGKAIVNILPIAQGVSIAALMPVDVPEEEWESLQIVFATSDGDVRQNDLSDFTN 673

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE-MSRG-KGVRLQ 690
             R GK  +K+     +         D V +V    + + F   +I    SRG  GVR  
Sbjct: 674 VMRNGKIAMKLPEGVSLVNAAIADENDDVMLVTSGGRAIRFPTTEIRVFKSRGSTGVRGI 733

Query: 691 SYKDGGISDVICFK---------------------------------------------- 704
                     +                                                 
Sbjct: 734 RLGAEDRVVSMAIIRHFEADPAEREAYLKQRRLMAGAVDDETEADEDEVAVAAGQLSTER 793

Query: 705 ----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      +        +  +     +  RGG+G     G  R G  ++S
Sbjct: 794 YAEMSAAEDLILTITTSGSGKLTSSHDYPVRGRGGMGVKAMDGAMRGGPLVAS 846



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L +++ G+  +    +     R G     +        +     V   D + +  
Sbjct: 800 AEDLILTITTSGSGKLTSSHDYPVRGRGGMGVKAMDGAMRGGPLVASFPVEMSDQIMLAT 859

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
              + +   + QI   SR   GV++ +         +     +G  
Sbjct: 860 STGQSIRVPVAQISFRSRSAGGVKVFNTGGDEQVVSVARVAEQGDD 905


>gi|256384433|gb|ACU79003.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385265|gb|ACU79834.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455402|gb|ADH21637.1| DNA gyrase, A subunit [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 834

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/763 (31%), Positives = 392/763 (51%), Gaps = 34/763 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
              +  + +   + + +L YA+S I  RA+PDL+DG KPVHRRII+AM+++G+      K
Sbjct: 19  HGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHK 78

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYTE
Sbjct: 79  KSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTE 138

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ +++  +++ +D D V F D Y+  + EP       PNLL NGT GIAVGMATSIP 
Sbjct: 139 ARLAKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATSIPP 198

Query: 194 HNVQEICEAALALIDNPEISIEKL-LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN++E+  A  A IDN +I+I+++  ++I+GPDFPTG ++    + + E Y+ GRG   +
Sbjct: 199 HNLKEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSK-MREGYKTGRGSVII 257

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+   EE        VVTEIPYQ  K+++IEKIAEL+  K I  + DIRDES  +   +
Sbjct: 258 RAKIDFEENK-KHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRI 316

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  +PD+++  ++  + +++ F +N+  L+      ++ L  I+K ++  +  V+
Sbjct: 317 IIELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLP-VLLDLKTIIKNYVEFQISVI 375

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVD 429
            +RS F    + +R  IL+ L IA  N+D++I II+N    +     + ++++  E Q  
Sbjct: 376 IKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVQLTNKYNFDEEQNK 435

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I  E+ N+      +D L+N+ ++Q N +  ++ E+ + F   
Sbjct: 436 AILDMRLQRLVGLERDKITLEMTNIKERLTYLDVLINTKEEQDNVLKNQLNEIADKFGD- 494

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL------ 543
                RRT   +          + +I      +++S  G+IR +      +         
Sbjct: 495 ----NRRTELID--EELINIEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVS 548

Query: 544 -HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH---N 599
            + +  D + IA      D +L  +  GK Y     N+ S       + ++  LN     
Sbjct: 549 VNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSE 608

Query: 600 QDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
             I       +       L  V+ KG     + SE     R GK  + +   +++  V  
Sbjct: 609 DKITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRDNDQLVSVFA 668

Query: 656 VTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
            TG   V +  E+ K++      +   SR G GV+    +D  +  V      +      
Sbjct: 669 TTGQDTVFIANESGKVIRIKESVVNPQSRVGGGVKALKLEDDDVV-VGAISSFKLTHITT 727

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF---LSS 753
            + +   +        +  R G G  V     R+GKF   + +
Sbjct: 728 VSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKFKAIIGA 770


>gi|261414774|ref|YP_003248457.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|284018092|sp|P35810|GYRA_FIBSS RecName: Full=DNA gyrase subunit A
 gi|261371230|gb|ACX73975.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 903

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/799 (30%), Positives = 396/799 (49%), Gaps = 81/799 (10%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   +++ YL Y++S I  RA+PD RDGFKPVHRR++++M ++G+       KSARIVG+
Sbjct: 15  VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGD 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VYD+L R+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEA+M  +  
Sbjct: 75  VIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGA 134

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L+ ++++ VD    Y+E   EP+V PS  PN++ NGTSGIAVGMAT++  HN++E+  
Sbjct: 135 LMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGA 194

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A  AL +NP+++ E L+EY+ GPDFPTG  IV  R  I E+Y  G G  RVRAR  +E  
Sbjct: 195 AIHALAENPDLTGEDLMEYVKGPDFPTGA-IVCGRSGIREAYLTGHGRVRVRARTEIETD 253

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            +G   I+VTEIPY V K+ L +KIA+L+  KRI  + DIRDES+ D+RIV     R   
Sbjct: 254 AKGKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRDIRIV-IELRRDAV 312

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            ++++ ++F  + ++T F +    L    +P+++ L  +L+ ++ HR +V+ R + F ++
Sbjct: 313 GEVVLNNLFKYTQLQTTFSIYNLALV-NNLPKLLTLKDLLQVYIDHRLDVITRATQFDLK 371

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRS 438
               R+ I++GL IA  NIDE++ IIR        K  +  RFSL E Q  AI+++RL  
Sbjct: 372 KAAARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDRFSLDEIQSQAIVDMRLAQ 431

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  L   ++++E + L+A    +  +L   +++   +  ++  V + +        RRTT
Sbjct: 432 LVGLNIEKLEAEYNELIATVADLKDILEKRERRVAIMLQKLDAVVDKYGDE-----RRTT 486

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDS 550
             E   A   +  + +I +E   + +S  G+IR                +     K+ D+
Sbjct: 487 IGE---AIDDSDDEDLIAEEEQVITLSKEGYIRRLPIDTFKAQNRGGKGIIGAGLKDEDN 543

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY 608
           ++    A T   +L+ +  G+ Y      L  G  +G+   I   + L   + +      
Sbjct: 544 VEQIFTASTHSYLLVFTNKGRVYWTKVYRLPEGARNGKGRPIVNFVALTEGEKVQAIVPV 603

Query: 609 DSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV------------ 653
                   L+  + KG    ++ +      + G   + +  ++++  V            
Sbjct: 604 RKFGGYFCLVFATKKGIINKMDLTLFSRPRKAGVNAISLDEDDELVKVQLVGMSAEEYEA 663

Query: 654 ----------------------------------------VKVTGDHVAVVGENRKLLIF 673
                                                     +  D + +  +N + + F
Sbjct: 664 SKNASDDDSAEAVENAAEAQAAEAAIAEESESGDAEDFANRPIPKDLLMIATKNGQAVTF 723

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
            I     M RG  GV+  +  +G    +    +  G   +    + Y +        + +
Sbjct: 724 PISCFRAMGRGTHGVKGITLAEGDEV-ISLLWLKAGNKILTITEKGYGKRSEPGSYRVTR 782

Query: 733 RGGVGSLVPKGFPRSGKFL 751
           RG  G        + G  +
Sbjct: 783 RGSKGVRNLNVTDKIGAAV 801



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 7/164 (4%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            A      D +++ + +G+A T P     +    G      I L    ++++     +  
Sbjct: 701 FANRPIPKDLLMIATKNGQAVTFPISCFRAMG-RGTHGVKGITLAEGDEVISLLWLKAGN 759

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD-HVAVVGENR 668
           K+L ++ KG     E        R  K    ++  +K+     V  V  D  + +  ++ 
Sbjct: 760 KILTITEKGYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLIITSKDG 819

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS-DVICFKICEGLT 710
           +++      I    R  +GV+  + +DG +  D       E + 
Sbjct: 820 QVIRIKAADIRLTGRNAQGVKAITLRDGDVVKDATALPSVEDIE 863


>gi|147106|gb|AAA24297.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr. W3110]
          Length = 730

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 264/728 (36%), Positives = 435/728 (59%), Gaps = 25/728 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L  + +   D
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTAD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ALID P+ +
Sbjct: 121 WVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           +++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W  E+       +V++ +
Sbjct: 181 LDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISAL 235

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFM 331
           P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P++  +D D +M  +F 
Sbjct: 236 PHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFA 295

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR ++R++ + +R+ IL+
Sbjct: 296 TTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILE 355

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE +I+ E 
Sbjct: 356 GLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQ 415

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L  E++++  +L S ++  N +  E++   + +        RR+   E   A KA  +
Sbjct: 416 SELEKERDQLQGILASERKMNNLLKKELQADAQAYGD-----DRRSPLQEREEA-KAMSE 469

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   ++ + + G+
Sbjct: 470 HDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGR 529

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +Y +    L S RG GE +   + L     +    +     KLL+ S  G  F+   +++
Sbjct: 530 SYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 589

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL 689
           +A  R GK  + +     +   V +    D +  + +  ++L+F +  +P++S+GKG ++
Sbjct: 590 VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKI 649

Query: 690 QSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            +         + G++ +        LT      R       +L    G+RG  G+ + +
Sbjct: 650 INIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIKLRPEELQKVTGERGRRGT-LMR 707

Query: 743 GFPRSGKF 750
           G  R  + 
Sbjct: 708 GLQRIDRV 715


>gi|172039454|ref|YP_001805955.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142]
 gi|171700908|gb|ACB53889.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142]
          Length = 846

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 236/781 (30%), Positives = 390/781 (49%), Gaps = 50/781 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K 
Sbjct: 20  EITPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKC 79

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R
Sbjct: 80  ARVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 139

Query: 136 MTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ +A+  +L  + E  VDF   ++    EPVV P++ PNLL NG +GIAVGMAT+IP H
Sbjct: 140 LSPIADQAMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPH 199

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +ALIDNPE+S EKL + I GPDFPTGG I+   + I ++YR G+G   VR 
Sbjct: 200 NLGELVDGLIALIDNPELSDEKLWKIIPGPDFPTGGEII-PTQGIEDAYRHGKGIISVRG 258

Query: 255 RWCVEEVGRGSWC------IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +E +  G         I+VTE+PYQV KS  IEKIA+L+   R+  + DIRDES   
Sbjct: 259 VVRIERMDVGKKRRKERTAIIVTELPYQVTKSTWIEKIADLVNGGRLEGIADIRDESDRS 318

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R      ++  ++  + ++  F   M  L     P+ + L  +L+E+L  R
Sbjct: 319 GMRVVIELKRDAVAKTVLRELYKKTALQQNFGAIMLALVD-NQPRQLSLRQLLEEFLKFR 377

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
              L R+ ++ ++    R+ +L+GLLIA  N+D II I+RN       K       +L+E
Sbjct: 378 EHTLTRQYNYELEECRNRLHLLEGLLIALNNLDRIIDILRNAADGTTAKTQFQQELNLSE 437

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL + +R L  LE  ++++E D L     ++++LLN+  +    +  E+R +K  
Sbjct: 438 AQANGILAMPMRRLTGLERQKLQAEYDELQGRINELENLLNNRPEFLKVLKKELRSLKRK 497

Query: 486 FSKSTDLG------------------------RRRTTFCEVSRADKATLQQAMIEKEPIT 521
           +                                + T+         +        + P  
Sbjct: 498 YGDERRTRIVQPTAQKSQSKATQTAKKQSSDQNKTTSISNREPDTTSQPFSLFTPQTPPK 557

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
             I    +  ++   S D       +      +      ++ ++++  GKAY +   ++ 
Sbjct: 558 NAILEMTYQGTICWRSPD---TKVPDNHVPIYSEPIQEREQFIVITDIGKAYPVNVADVP 614

Query: 582 SGRGHGEAIQLLIDLNHNQD---IVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANT 635
                   +  L+  +  +D   +V+ F          LL+++++G    ++ SE+   T
Sbjct: 615 PIEIQPIPLLSLLPKSAQRDSKKVVSLFFLSDNTENKDLLLLTNQGKIKRIQLSELAGLT 674

Query: 636 RKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQS 691
            +G   +K+  ++ ++ V     G+ VA+   + ++L F +    IP M R  +G +   
Sbjct: 675 NRGLVLIKLKDQDGLESVSITKEGEEVAIAMSSGRVLRFPVVDEVIPIMGRNAQGNQALK 734

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + G    + C  + +    +  +   Y +  N     + K G +G+   +   ++   L
Sbjct: 735 LRYGETI-IGCVTLDDNKIVLLVSKLGYGKRLNVTGLRMTKLGDIGTQALQFTHKNDSLL 793

Query: 752 S 752
            
Sbjct: 794 G 794



 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 59/173 (34%), Gaps = 8/173 (4%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-ID 595
           +  L  +  K+ D L+        + + +  + G+    P  + +       A     + 
Sbjct: 675 NRGLVLIKLKDQDGLESVSITKEGEEVAIAMSSGRVLRFPVVDEVIPIMGRNAQGNQALK 734

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKM 650
           L + + I+     D    +L+VS  G    +  + +   T+ G            ++  +
Sbjct: 735 LRYGETIIGCVTLDDNKIVLLVSKLGYGKRLNVTGL-RMTKLGDIGTQALQFTHKNDSLL 793

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            ++       + ++   +K L      +    + G+G RL    +  + D + 
Sbjct: 794 GMIRASDSKDITLLTNQKKTLNIVAKDVKIWGKDGQGDRLVKLSNQEVIDYVM 846


>gi|148826812|ref|YP_001291565.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittGG]
 gi|148718054|gb|ABQ99181.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittGG]
          Length = 747

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 275/749 (36%), Positives = 435/749 (58%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 ASP-----RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 651 TSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRAERGRKGSTLPRGLHTN 739


>gi|144575501|gb|AAZ53894.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 853

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 236/755 (31%), Positives = 398/755 (52%), Gaps = 24/755 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ M+E+G+  G ++
Sbjct: 42  ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 101

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYT
Sbjct: 102 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 161

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++G+ ++ VDFR  Y+  + EP V P+KFPNLL +G SGIAVGM T IP
Sbjct: 162 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 221

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI  + +    NP+I I +L+  + GPDFPTG  I   ++ I ++Y  G+G F +
Sbjct: 222 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIY-GKKGINQAYLTGKGSFII 280

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+  EIPY+V+K  +IEK+A L+  K+I  ++D+RDES+     V
Sbjct: 281 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 340

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   +   P++++  ++  +D++  + +NM  L    VP++M L  I   +L H++E+ 
Sbjct: 341 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALV-NGVPKLMNLAQIFNYYLEHQKEIN 399

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            R  +F ++    ++ +L+G+ +A  NIDE+I II++       +  +   ++L   Q  
Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNPGQTK 459

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L  L   ++ +E++ L  E  +I S+++S K+  + I  + + V   F   
Sbjct: 460 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDP 519

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALHF 545
               RR     E+   D+  L           +   V        R      +   A + 
Sbjct: 520 ----RRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMALDEYRLQNRGGIGTLASNH 575

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
            + D LK     +T   +L++S+  K + L A  +  G   G+   I  LI L  N+ I 
Sbjct: 576 YKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIKLEKNESIS 635

Query: 604 TAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
               ++       L+ VS+ GN      S     T+ GK  LK++  + +        + 
Sbjct: 636 NLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLAENDYLVSAFIAPNNP 695

Query: 660 --HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             ++ +      +  +SI  + +  R   GV+    ++G      CF   +       + 
Sbjct: 696 DLNILIGSSQGFVNRWSIKLLRDSGRTAIGVKGIKLEEGHKIIGACFAF-DNNFIFSLSK 754

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + + +        L  R   G +      ++G  +
Sbjct: 755 KGFGKKTQVGEYRLTGRTTKGLMSLDA-KKAGNLV 788



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMK 651
           I L     I+ A        +  +S KG     +  E     R  K  + + +++   + 
Sbjct: 729 IKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKKAGNLV 788

Query: 652 LVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +  +  +  A++  +    +   +D +P +SR  KGV++ + K G     +  
Sbjct: 789 FISAIKNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSL 842



 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 3/125 (2%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           + +  +  +EG  +  A  A   + I  LS  G       G         + +   +D  
Sbjct: 724 IGVKGIKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMS-LDAK 782

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVK 655
              ++V      +  + ++ + KG A  ++     II+   KG   + +   +++  V  
Sbjct: 783 KAGNLVFISAIKNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSL 842

Query: 656 VTGDH 660
           ++ + 
Sbjct: 843 ISKNE 847


>gi|58698209|ref|ZP_00373130.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535290|gb|EAL59368.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 880

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 248/808 (30%), Positives = 384/808 (47%), Gaps = 91/808 (11%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +KK+ARIVG+V+GK HPHGD ++
Sbjct: 1   MSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAI 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YDSLVR+AQ F    PLI GQGNFG+IDGD  A+ RYTEAR+ +V+  +L  +DED VDF
Sbjct: 61  YDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           R  Y+  ++EPVV P++FP+LL NG SG+AVGMAT+IPSHN+ EI +A +  +DNPE+++
Sbjct: 121 RPNYDGNETEPVVLPAEFPHLLVNGASGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTL 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++LLE + GPDFPTGG I+  R  I  ++  GRG   V+ +  +E++ +    IV+ EIP
Sbjct: 181 DELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K +LIEKI EL+  KRI  + +IRDES +    V+    R+ +   ++  I  L+ 
Sbjct: 240 YQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLRRNAEASFILNQILGLTP 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           + + F +N  VL+    P +M L  I++ ++  R+EVL RR+ FR++    +  I  GL 
Sbjct: 300 LRSSFSVNTLVLN-NNRPALMSLKEIIEAFIDFRKEVLIRRTEFRLRKTREKAHIYIGLY 358

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVS-----------------------------RFSLTE 425
           IA L+IDE+I IIR    P                                    + LTE
Sbjct: 359 IAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFLKDGVYRLTE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q+ AIL+++L+ L  LE+ ++++EL +++   ++  + L SG++   +I   ++E+K  
Sbjct: 419 LQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNR 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+         +     +          +       +        R+ +           
Sbjct: 479 FAVPRKTSIEESDTDIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGL 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           KE D +      +T   +L  S  G+ Y L    L        G A+  +  L   + I 
Sbjct: 539 KEEDVITELFVTNTHTSVLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPLAEGETIT 598

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
                    D    ++  ++ GN      ++       GK  +K+   +K+  V      
Sbjct: 599 NIMPLPSENDENQNIVFTTAYGNIRRNSLADFHYIPSNGKIAIKLDEGDKLISVKVCNEI 658

Query: 659 DHVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSY-KDGGISDVICFK----------- 704
           DHV +     K + F +  + +  SR   GVR     K+  +  +               
Sbjct: 659 DHVFLSTRFGKSIRFVVSDVRQFKSRNSDGVRGIKLAKNDSVISMTILNGIGVATETKEL 718

Query: 705 ---------------------------------------ICEGLTWIDSAGRSYNRSEND 725
                                                         +      + +  + 
Sbjct: 719 YLKVPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTITENGFGKRTSA 778

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +  RGGVG        R+G  ++S
Sbjct: 779 YEYRITNRGGVGITNILTTSRNGNVVAS 806



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 68/553 (12%), Positives = 153/553 (27%), Gaps = 76/553 (13%)

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
                + S + I+E++   R    +R R             +   +   V     + KI 
Sbjct: 313 NNRPALMSLKEIIEAFIDFRKEVLIR-RTEFRLRKTREKAHIYIGLYIAVLSIDEVIKII 371

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
                      E +  E      I    +  S     L + ++ L++++ +  L+M +  
Sbjct: 372 RGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFLKDGVYRLTELQIKAILDMKLQR 431

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
           +  + +   L+  L   +   +E +    S      + +  + +      +     I   
Sbjct: 432 LTGLEK-DKLEAELSSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRFAVPRKTSIEES 490

Query: 408 RNEDKPKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
             + + +  +      +T      I  ++L   R             L  E    +  + 
Sbjct: 491 DTDIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVT 550

Query: 467 SGKQQWNQIAC-----EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           +        +       ++  K   ++ T  GR       ++  +  T    +  +    
Sbjct: 551 NTHTSVLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPLAEGETITNIMPLPSENDEN 610

Query: 522 ---VVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
              V  +  G IR           S    A+   EGD L      +  D + L +  GK+
Sbjct: 611 QNIVFTTAYGNIRRNSLADFHYIPSNGKIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKS 670

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD----------------------- 609
                 ++   +         I L  N  +++  + +                       
Sbjct: 671 IRFVVSDVRQFKSRNSDGVRGIKLAKNDSVISMTILNGIGVATETKELYLKVPLAKRLGT 730

Query: 610 -----------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                                        +   +L ++  G        E     R G  
Sbjct: 731 AINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTITENGFGKRTSAYEYRITNRGGVG 790

Query: 641 FLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              +     +   +       GD++ ++ +  KL+  S++ I    R  +GV L  +K  
Sbjct: 791 ITNILTTSRNGNVVASFPVEQGDNIMLITDKGKLIRISVNDIRIAGRSTQGVTL--FKTE 848

Query: 696 GISDVICFKICEG 708
               V+     E 
Sbjct: 849 SREKVVSVAKIED 861


>gi|323491054|ref|ZP_08096246.1| DNA topoisomerase IV subunit A [Vibrio brasiliensis LMG 20546]
 gi|323314718|gb|EGA67790.1| DNA topoisomerase IV subunit A [Vibrio brasiliensis LMG 20546]
          Length = 760

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 274/755 (36%), Positives = 448/755 (59%), Gaps = 25/755 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  ++ ++ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKSELPDIMNFVQGPDYPTEAEIISPKADLEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE-----GNEIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPRSNRVDCDQLMNHLFASTDLEKNYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +T+
Sbjct: 357 EFRRATVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLELLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD  +L++
Sbjct: 477 YGD-----DRRSPMVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAGSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L  DG++Y+L + +L S R  GE I   +++    +I   
Sbjct: 531 KSGDNYLAHSRGKSNQQAVFLGNDGRSYSLESHSLPSARSQGEPITGRLNIAAGTNIRHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ + S++++  R GK  + +    ++ L   V     D + 
Sbjct: 591 VMGEEEQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPQNSEVLLPKAVGNLENDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F I  +P++ +GKG ++ +        ++  +S +I     +    + + 
Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKEREEFVSHLIAL-PQQSSVTLYAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R      +DL  + G+RG  G L+P+G  R  + 
Sbjct: 710 KRKLGLKPSDLENFRGERGRRGGLLPRGLQRVTRI 744


>gi|145631949|ref|ZP_01787703.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
 gi|144982400|gb|EDJ89974.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
          Length = 747

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 274/749 (36%), Positives = 435/749 (58%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 ASP-----RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+ +      +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDNYRAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 651 TSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRAERGRKGSTLPRGLHTN 739


>gi|84501054|ref|ZP_00999289.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
 gi|84391121|gb|EAQ03539.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
          Length = 889

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 261/832 (31%), Positives = 402/832 (48%), Gaps = 108/832 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   +   YL YA+S I  RAIPDLRDG KPVHRRI+ AM E+G      ++KSAR V
Sbjct: 1   MSITDEMRNSYLDYAMSVIVARAIPDLRDGLKPVHRRILFAMHEVGNTHDKPYRKSARPV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+L R+AQ F    PL+ GQGNFG++DGD  AA RYTE RM + 
Sbjct: 61  GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDKPAAMRYTEVRMDKP 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L  +D+D VDF+D Y+ +D EP V P +FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 121 AQYMLADIDKDTVDFQDNYDGKDREPSVLPVRFPNMLVNGAGGIAVGMATNIPPHNLGEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALIDNP++S+E+L++Y+ GPDFPTGG+++  R    ++Y  GRG   +RA+  VE
Sbjct: 181 VDATLALIDNPDLSVEELIDYVPGPDFPTGGVLL-GRSGARKAYTEGRGSCIIRAKTHVE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ R  + IV+ EIPYQV KS +IEKIAE +  K+I  +  ++DES      V+    R 
Sbjct: 240 ELRRDRYAIVIDEIPYQVNKSAMIEKIAEQVREKKIEGISHVQDESDRHGVRVVVELKRD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             PD+++  +F  + M+T F  NM  L+ G  P+ + L G L  +++ R EV+ RR+++ 
Sbjct: 300 ATPDVVLNQLFRFTPMQTYFGCNMLALN-GGRPETLTLYGFLSNFISFREEVVARRTAYL 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------------------------- 412
           ++    R  IL GL +A  N+DE++A IR                               
Sbjct: 359 LRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARQKLMARRWPAEEIAPYIRLIDD 418

Query: 413 --PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              +      ++L+E Q  AIL LRL+ L +L   ++  EL+ L  + ++   +L S ++
Sbjct: 419 PTHRMNDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILGSRER 478

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I+ E+REVKE+F+       RRT   + S   +    + +IE+  + V I+  G+I
Sbjct: 479 IMQIISDELREVKELFAVP-----RRTEIVDWSGDME---DEDLIERAEMVVTITQSGYI 530

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
           +          K     LS +  K+ D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 531 KRTPLEDYRAQKRGGKGLSGMATKDDDVVTSLFVANTHTQLLFFTTDGMVYKLKTWRLPL 590

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEIIAN 634
                 G+AI  ++ +     I      D   K      ++  +S G       S+    
Sbjct: 591 GGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWGDLQIVFATSAGTVRRNALSDFTNV 650

Query: 635 TRKGKTFLKV---SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVR 688
              GK  +K    +   ++         D V +  ++ + + F  D +    SR   GVR
Sbjct: 651 KSNGKIAMKFEGENEGMRLINARICGAEDDVMLFTQSGRAIRFRADDVRVFNSRSSVGVR 710

Query: 689 LQSYKDGGISDVICFKI------------------------------------------- 705
                +      +                                               
Sbjct: 711 GVRLNEKDEVASMFVLPTFPAESDERASYLKMRRAMAGDVEQTTDEEEGNADMPLPQDRY 770

Query: 706 ----CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +           +     L  RGG+G    +   R+G+ +++
Sbjct: 771 AEMSAAETLILTITAGGAGHISSSHDYPLRGRGGMGVTAWEKTMRTGEIIAA 822



 Score = 45.5 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 16/126 (12%)

Query: 598 HNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTFL----KV 644
             ++                     +L +++ G   I    +     R G         +
Sbjct: 755 DEEEGNADMPLPQDRYAEMSAAETLILTITAGGAGHISSSHDYPLRGRGGMGVTAWEKTM 814

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            +  ++     V   D V +     + +   +D I   SR   GVR+ +   G     + 
Sbjct: 815 RTG-EIIAAFPVEMDDQVMLATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGETVVSVA 873

Query: 703 FKICEG 708
               +G
Sbjct: 874 RIAEQG 879



 Score = 44.8 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++  G  +   + +       G  +          +I+ AF  +   ++++ +SKG + 
Sbjct: 782 TITAGGAGHISSSHDYPLRGRGGMGVTAWEKTMRTGEIIAAFPVEMDDQVMLATSKGQSI 841

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
            V    I   +R   G         E +  V ++   
Sbjct: 842 RVPVDGISFRSRSAGGVRVFNTGKGETVVSVARIAEQ 878


>gi|162148106|ref|YP_001602567.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542720|ref|YP_002274949.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786683|emb|CAP56266.1| putative DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209530397|gb|ACI50334.1| DNA gyrase, A subunit [Gluconacetobacter diazotrophicus PAl 5]
          Length = 930

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 236/738 (31%), Positives = 365/738 (49%), Gaps = 43/738 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            ++  V++   +   YLAYA+S I  RA+PD+RDG KPVHRRI+++M E G      ++K
Sbjct: 14  SDMIPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSMRESGFTHDKPYRK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR VG+V+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGDS AA RYTEA
Sbjct: 74  SARAVGDVMGKYHPHGDSSIYDAMVRMAQFWSMRVKLIDGQGNFGSVDGDSPAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ + A  +L  +D D VDF+  Y+E + EP + P+ FPNLL NG SGIAVGMAT+IP+H
Sbjct: 134 RLAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLINGASGIAVGMATNIPTH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  EI +A LALI NP+++++ L+  + GPDFPTGGII+     I  ++  GRG   +RA
Sbjct: 194 NPAEIIDATLALIANPDLTLDDLIRIVPGPDFPTGGIIL-GHAGIRSAFETGRGSILIRA 252

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+ R    IV+TEIPYQV K+ L E+IAEL+ AK+I  + DIRDES      ++ 
Sbjct: 253 RAEIEELRRDRSAIVITEIPYQVNKATLQERIAELVRAKQIEGISDIRDESDRSGMRIVI 312

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + ++T F +NM  L     P++M L  +L+ ++  R +V+ R
Sbjct: 313 EIKRDATPEVVLNQLYRFTQLQTSFGVNMLALD-NGQPRLMGLKDVLEAFITFREDVILR 371

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF------------- 421
           R+ F +     R  +L GL+IA  NID +IA+IR          +               
Sbjct: 372 RARFDLNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAAHAREALMATAWDAADVEPLL 431

Query: 422 ---------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           LTE Q   IL LRL+ L  LE  +I+ EL  + A   ++ +++ 
Sbjct: 432 ALIQDEGNVVTDGKVYLTEAQARGILELRLQRLTGLEREKIQQELSEVAARINELLTIIA 491

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  ++   +  E+  ++   +        +    +   +     Q  +       +  + 
Sbjct: 492 SRPRRMEVMCEELAAIRAELATPRMTEIAQYAGDQTDESLIEPGQMVVTITREGFIKRTP 551

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
               R+        +A   +  D +  + +AHT   +L  S+ GKAY      L      
Sbjct: 552 LDVFRAQNRGGRGRTAAGRRGDDIVVRSFNAHTHQWVLFFSSGGKAYREKVWRLPEASPT 611

Query: 587 GE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKG 638
            +  A+  L+       I                 L+  ++ GN      S+       G
Sbjct: 612 AKGRALVNLLPDLGGDSITAVLPLPQDETLWENLHLVFATATGNVRRNRLSDFRNIRSSG 671

Query: 639 KTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEM-SR-GKGVRLQSYK 693
              +K+   +++  V     G  V +     + + F I    +     R   GVR     
Sbjct: 672 LIAMKLDDGDRLIGVATCREGQDVFLATRAARCIRFQITDDTLRVFAGRDSSGVRGIRLA 731

Query: 694 DGGISDVICFKICEGLTW 711
           +G   + +C       T 
Sbjct: 732 EGDEVNSLCVLNHVEATV 749



 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-----SSEEKMKLVVKV-TGDH 660
           +  +   LL VS+ G        +   + R G+    +         ++   + V  G  
Sbjct: 803 MEQAEEILLTVSNAGFGRRSSAYDYRVSGRGGQGIANMTFNGGKRGSEVVATLPVINGTD 862

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
           V +V +  +L+   +DQI  MSR   GV L    
Sbjct: 863 VMLVTDAGRLIRVPVDQIRVMSRQASGVTLFRLD 896



 Score = 42.1 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 10/36 (27%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           I  G   +      + +     +     RGG G   
Sbjct: 532 IEPGQMVVTITREGFIKRTPLDVFRAQNRGGRGRTA 567


>gi|218246206|ref|YP_002371577.1| DNA topoisomerase [Cyanothece sp. PCC 8801]
 gi|218166684|gb|ACK65421.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8801]
          Length = 835

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 244/784 (31%), Positives = 393/784 (50%), Gaps = 48/784 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    +   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLATGQIIPTALHTEMKRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPFRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +A+  +L+ + E  VDF + ++    EPVV P++ P LL NG +GIAVGMA
Sbjct: 126 RYTETRLASIADTGMLRDISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCTGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID+PE+S EKL + I GPDFPTGG I+ ++E I E+Y  GRG
Sbjct: 186 TNIPPHNLGEIVDGLVALIDDPELSDEKLWQLIPGPDFPTGGEII-TQEGIREAYATGRG 244

Query: 249 GFRVRARWCVEEVGRGSWC------IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              VR    +E +  G         IVVTE+PYQV K+  IEK+A+L+   R+  + DIR
Sbjct: 245 IIPVRGITRIETLDVGRKRRRERTAIVVTELPYQVNKAAWIEKMADLVNQGRLEGIADIR 304

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R    + +++S++  + +++ F   +  L   + P  + L  +L+
Sbjct: 305 DESDRTGMRVVIELKRDAKANTVLKSLYKQTALQSNFGAILLALVDNK-PCQLSLRRLLE 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-- 420
           E+L  R + L R+ +  ++    R+ +L GLLIA  N+D II I+RN        +    
Sbjct: 364 EFLRFREQTLTRQYTHELEEAQSRLHLLAGLLIALNNLDAIIDILRNAADGTTAKMRFQA 423

Query: 421 -FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              +++ Q +AIL + +R L  LE  +++SE   L    E++ +LL+   +    +  ++
Sbjct: 424 ELGISDAQANAILAMPMRRLTGLERQKLQSEHSELQTRIEELQTLLSDRHELLKTLKKDL 483

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
           R +K  F        RRT   +  +  K++    + ++EP T +                
Sbjct: 484 RSLKRKFGDP-----RRTRIVQPPKTPKSSSTPNVKKEEPPTTLSPKTEESPRKTPSLTL 538

Query: 533 --------------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
                                      +  DS            +++++  GKAY +   
Sbjct: 539 FTPQPPPENAILEINHQGEASWRLPDGQGQDSPIFRAIIGQKSELMVITDAGKAYPVAVA 598

Query: 579 NLLSGRGHGEAIQLLIDLNHNQD----IVTAFVYDSTC--KLLVVSSKGNAFIVEESEII 632
            +         +  L+     +D    I   FV +      LL+++ +G    V+ SE+ 
Sbjct: 599 EIPPLTLQAIPLLSLLPKGAQRDANRVIDAGFVPNDPHGYDLLLLTQQGRIKRVKMSELS 658

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVR 688
             T +G   +K+   +++  V     G  VA+     ++L + +    IP M R  +G +
Sbjct: 659 DLTNRGLVLIKLKEGDRLGFVCPTQEGQEVAIAISGGRILRYPVTDEVIPLMGRSAQGNQ 718

Query: 689 LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               ++ G + V C  +      +  +   Y +  +     LGK G +G+   +   ++ 
Sbjct: 719 ALKLRNVGETVVNCLTLHSQGEVLLISSLGYGKRLSLTELRLGKLGDLGTQCLQFTQKTD 778

Query: 749 KFLS 752
           K   
Sbjct: 779 KLAG 782


>gi|3128378|gb|AAC16230.1| DNA gyrase subunit a [Rhodobacter capsulatus SB 1003]
          Length = 883

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 247/830 (29%), Positives = 397/830 (47%), Gaps = 112/830 (13%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RAIPDLRDG KP HRRI++AM E G      ++KSAR VG+V+GK
Sbjct: 1   MKTAYLDYAMSVIVSRAIPDLRDGLKPAHRRILYAMHETGNTHDKPYRKSARPVGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGDSAAA RYTE RM + A  +L 
Sbjct: 61  YHPHGDAAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDSAAAMRYTEVRMDKPAAFLLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+ +A LA
Sbjct: 121 DIEKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++S E L++Y+ GPDFPTG  I   R    ++Y  GRG   +RA+  +EE+ +  
Sbjct: 181 LIENPDLSSEALMDYVPGPDFPTGAQI-MGRGGARKAYLEGRGSVIIRAKTRIEEIRKDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
           + I++ EIPYQV K+ +IEK+A+L+  K++  +  I DES      V+    R    D++
Sbjct: 240 FAIIIDEIPYQVNKATMIEKMADLVREKKLEGIASIADESDRVGVRVVIELKRDATADVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L+ G  P+ + L   L  ++A R EV+ RR+++ ++    
Sbjct: 300 LNQLYRFTPLQTSFGCNMLALN-GGRPEQLTLRDFLSHFIAFREEVVARRTAYELRKARE 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKP-----------------------------V 416
           R  IL GL +A  N+DE++A IR+   P                                
Sbjct: 359 RSHILCGLAVAVSNVDEVVATIRSSKDPAEARDRLMERRWPAHEIVEYLRLIDDPLHPVN 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               ++L+E Q  AIL+LRL+ L  +   ++  EL  L  +     ++L S ++    IA
Sbjct: 419 DDGTYNLSEVQARAILDLRLQRLTAMGVQEVTDELAELAGKIRDYLAILASRERIMAIIA 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+REV+   +       RRT   + +        + +IE+E + V I++ G+I+     
Sbjct: 479 TELREVRAAHAVP-----RRTEIVDWAGD---LDDEDLIEREDMVVTITSGGYIKRTPLA 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
                +     L+++  KE D +     A+T  ++L  +TDG  Y+L    L        
Sbjct: 531 EFRAQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYSLKCWRLPLAGRTSK 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
           G+AI  ++ +     + +    D         ++   +S G+      S+     + GK 
Sbjct: 591 GKAIVNILPIPQGVSVASLMPVDEPEETWDDFQVFFATSDGDVRRNALSDFAKVMKNGKR 650

Query: 641 FLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRLQSYKDGGI 697
            +++     +         D + +V  + + + F + ++     R   GVR     +G  
Sbjct: 651 AMELPEGVTLVDTRMCHEEDDIMLVTASGRAIRFPVPEVRIFKGRSSTGVRGVRLAEGDK 710

Query: 698 SDVICF-------------------------------------KICEG------------ 708
              +                                          EG            
Sbjct: 711 VVSMSVIRHFEAEPWERDAFVKRYRAELGGETEDEAETDRDAEDEAEGGEGVLSDARYAE 770

Query: 709 -----LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   +    +   +  +     +  RGG G    +   R G  ++S
Sbjct: 771 MLAAQDLILTITAKGLGKISSSHSYPVRGRGGQGVTAFEKSMRGGALVAS 820



 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 5/102 (4%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGENRK 669
           +L +++KG   I          R G+             +     V   D V +     +
Sbjct: 778 ILTITAKGLGKISSSHSYPVRGRGGQGVTAFEKSMRGGALVASFPVEPTDQVMLATSTGQ 837

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
            +   +  I   SR   GV++ +         +      G  
Sbjct: 838 SIRCPVAGISFRSRAAGGVKVFNTGAEEEVVSVARVADPGDD 879


>gi|148653991|ref|YP_001281084.1| DNA topoisomerase IV subunit A [Psychrobacter sp. PRwf-1]
 gi|148573075|gb|ABQ95134.1| DNA topoisomerase IV subunit A [Psychrobacter sp. PRwf-1]
          Length = 762

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 274/760 (36%), Positives = 438/760 (57%), Gaps = 25/760 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D  + ++ +  E +   S+    E+ YL YA+  I +RA+P + DG KPV RRII+AMS
Sbjct: 2   SDITTPASVIPNEAMDTRSVAEFTEQAYLNYAMYVIMDRALPHIADGLKPVQRRIIYAMS 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLISGQGN+G+ D
Sbjct: 62  ELGLKSTTKPKKSARTVGDVLGKYHPHGDTACYEAMVLMAQPFSYRYPLISGQGNWGSPD 121

Query: 123 G-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
              S AA RYTEA+M+  A  +L  + +  VD++D ++    EPV  P++ PN+L NGT+
Sbjct: 122 DPKSFAAMRYTEAKMSAYANTLLAELGQGTVDWQDNFDGSMQEPVTLPARLPNILLNGTT 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IP HN+ E+  AA+ L+ NP++S+++L + I  PD PT   I+ S++ +  
Sbjct: 182 GIAVGMATDIPPHNLNEVVRAAIRLLKNPDLSVKQLTQSIPAPDLPTAAEIITSKKDLQA 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            Y  GRG +++RA + V++  +    +++  +PYQV  +++ E+IA+L++ K++P + DI
Sbjct: 242 MYETGRGSYKMRAVYHVDQQEKNL--VIIDALPYQVSGNKVQEQIAKLMMDKKLPWVVDI 299

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES  +   RIVL  ++  +D   +M  +F  +D+E+ + +NMN++ +   PQV  L  
Sbjct: 300 HDESDHENACRIVLELRSTRVDVARVMSHLFASTDLESSYRVNMNMIGLNGKPQVKNLKE 359

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L+EWL  RR+V+ RR  FR+  ID+R+ IL GLLIAYLNIDE+I IIR ED PK  ++ 
Sbjct: 360 VLEEWLISRRQVVTRRVQFRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPKQELMG 419

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ L++ Q +AIL++RLR L +LEE +++SE D L AE+  +  LL++ +     +  E+
Sbjct: 420 KYDLSDIQANAILDIRLRQLARLEEIELRSEKDALEAERATLQELLDNPESLTQLMIEEL 479

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               +          R ++  E   A  A  +  ++  EPIT V+S  GWIR+ K H VD
Sbjct: 480 EADMKEHGN-----DRMSSVVEREEA-TALKESDLVPSEPITAVLSKAGWIRAAKGHDVD 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
              + ++ GDS +  +H+ + ++I ++ + G++Y++ A  L S RG G+ +  ++     
Sbjct: 534 AKGMSYRSGDSYQAHVHSKSNEKIYIMDSTGRSYSIEAHTLASARGQGDPLTSVLKPPAG 593

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
                        ++++ SS+G  FI     +  N + GK  +   ++ K+  V  +   
Sbjct: 594 ASFEQLLAGADDQRIILASSQGYGFINTLGNLETNQKAGKNVINFDADAKLLTVATIDKT 653

Query: 659 -------------DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI 705
                        + +AVV     LLIF +D++PE  RGKG +L + K G     +    
Sbjct: 654 DSETPDDAQALTQNQIAVVTSAGYLLIFGVDELPEQQRGKGNKLINLKAGEEVLAVIALN 713

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 I +  R       DL  +  KRG  G  +P+GF 
Sbjct: 714 SHDSLTITAGKRHVTLKPMDLANYTSKRGNRGGQLPRGFQ 753


>gi|296331027|ref|ZP_06873502.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674544|ref|YP_003866216.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152032|gb|EFG92906.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412788|gb|ADM37907.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 807

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 214/754 (28%), Positives = 383/754 (50%), Gaps = 24/754 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+
Sbjct: 5   PELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTE
Sbjct: 65  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +A +  I  P  S+++L+E I GPDFPTGG I++  + I ++Y  G+G   +R
Sbjct: 185 HHLGEVIDAVIKRIQMPSCSVDELMEVIKGPDFPTGG-IIQGVDGIKKAYETGKGKIIIR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E +  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+
Sbjct: 244 GKAEIETIRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D   ++  ++  +D++  +     V    R P +M L  IL  ++ H++EV+ 
Sbjct: 304 IELKKEADAKGILNFLYKNTDLQITYNF-NMVAIHNRRPMLMSLPSILDAYIGHQKEVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
            RS + +Q    R  I++GL+ A   +DE+IA IR+    +    +   ++  TE Q +A
Sbjct: 363 NRSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +   +K E + L  + E+++S+L++ K+    I   ++ +K+ ++   
Sbjct: 423 IVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYAD-- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
               +R +  E    +     + M+  E + V ++  G+++     S    +      K+
Sbjct: 481 ----KRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKD 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D +      +TTD +LL +  G     P   L   R       +  +I ++ ++ IV A
Sbjct: 537 TDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHLSNIITIDRDETIVKA 596

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-H 660
                +D +  LL  +  G     E +   A    K    L +  E+++  V    G+  
Sbjct: 597 IPIKEFDPSAYLLFFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELIDVHVTNGESQ 656

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +       L F  D++  +  R  GV+  + K+     V    + E  + +    R  
Sbjct: 657 IFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFV-VSGEILQESDSIVLFTQRGA 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
            +  +        R   G ++ +   R+  + ++
Sbjct: 716 VKRMSLSEFEKTSRAKRGVVMLRELKRNPHRVVA 749


>gi|239827050|ref|YP_002949674.1| DNA topoisomerase IV subunit A [Geobacillus sp. WCH70]
 gi|239807343|gb|ACS24408.1| DNA topoisomerase IV, A subunit [Geobacillus sp. WCH70]
          Length = 814

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 218/758 (28%), Positives = 389/758 (51%), Gaps = 26/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  ++L   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MAERLLDLALEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYIDGNTADKPF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K+A+ VG VIG  HPHGD SVYD++VR++Q +  R  LI   GN G+IDGD  AA RYT
Sbjct: 61  RKAAKTVGNVIGNFHPHGDSSVYDAMVRMSQDWKLRNVLIEMHGNNGSIDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +++  VDF   +++   EPVV P+ FPNLL NG++GI+ G AT IP
Sbjct: 121 EARLSAIASELLRDIEKQTVDFVPNFDDTTKEPVVLPAMFPNLLVNGSTGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H++ E+ +A +  ID P  ++++L+  + GPDFPTGG I++ ++ I ++Y  G+G   +
Sbjct: 181 PHHLGEVIDAVIMRIDKPNCTVDELMTVLHGPDFPTGG-IIQGKDGIKKAYETGKGKIII 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  +E+   G   I++TE+PY+V K+ L++KI EL   K++  + D+RDE+      +
Sbjct: 240 RGKAVIEQAKGGKKQIIITELPYEVNKANLVKKIDELRFDKKLDGISDVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++  ++  +D++  +     V    R P+++ L  +L  ++ HR+EV+
Sbjct: 300 VIELKKDADAEGILNYLYKNTDLQVPYNF-NMVAIHKRHPKLLSLPELLDAYIEHRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
             RS + ++    R  I++GL+ A   +DE+IA IR     +     +++++  TE Q +
Sbjct: 359 TNRSQYELKKAHERQHIVEGLMKALSILDEVIATIRASRDKRDAKDNLMAKYKFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   +K E + L    +++ ++LN  K+    I  E+R +K+ ++  
Sbjct: 419 AIVSLQLYRLTNTDITALKQEAEQLEKTIQELTAILNDEKKLLAVIKKELRAMKKQYADE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T  E    +     + MI  E + V ++  G+++     S    +      K
Sbjct: 479 ------RRTVIEDEIEEIKINLEVMIPAEDVIVTVTKEGYVKRTSYRSYSASNGQDFGMK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D L   +  +TTD +LL +  G     P   L   R       I  LI L+ N +I+ 
Sbjct: 533 ESDRLLSQMEMNTTDVLLLFTRQGNYLYCPVYELPDIRWKDVGQHISNLIPLDRNDEIIA 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
           A     +D +  L+ V+ +G     E ++       +    + V  ++++  V    G  
Sbjct: 593 AVPVKQFDDSLSLIFVTKRGMVKRTELAQYKVQRYTRPLVAMNVKEDDEVIHVYVTDGQQ 652

Query: 661 -VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGR 717
            + +V      L F   +I  +  R  GV+  + K+G  +         E +  + +  R
Sbjct: 653 SLLLVTNQGYGLWFDEAEISTVGVRAAGVKGINLKEGDYVVSAHPIGKEEHMYLVIATQR 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
              +           R   G ++ +   ++   + ++S
Sbjct: 713 GAVKKMPLSEFEKTSRAKRGVVMLREL-KTNPHRIVAS 749


>gi|298484933|ref|ZP_07003031.1| Topoisomerase IV subunit A [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160487|gb|EFI01510.1| Topoisomerase IV subunit A [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 753

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 265/761 (34%), Positives = 439/761 (57%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLEEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE + L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----NRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK----------GVRLQSYKDGGISDVICFKICEGL 709
            +A V    +LL+F I  +P++ +GK          G R+ S ++  ++D+        L
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGKGNKIIGIPGERVAS-REEYVTDLAVIAQGATL 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             + +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 709 -VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 748


>gi|332968503|gb|EGK07566.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Psychrobacter sp.
           1501(2011)]
          Length = 766

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 278/761 (36%), Positives = 438/761 (57%), Gaps = 26/761 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            +   ++  +  E +   S+    E+ YL YA+  I +RA+P + DG KPV RRII+AMS
Sbjct: 5   SNIPPSATVIPTEAMDTRSVAEFTEQAYLNYAMYVIMDRALPHIADGLKPVQRRIIYAMS 64

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G+ D
Sbjct: 65  ELGLKSTTKPKKSARTVGDVLGKYHPHGDTACYEAMVLMAQPFSYRYPLITGQGNWGSPD 124

Query: 123 G-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
              S AA RYTEA+M+  A  +L  + +  VD++D ++    EPV  P++ PN+L NGT+
Sbjct: 125 DPKSFAAMRYTEAKMSAYANTLLAELAQGTVDWQDNFDGSMQEPVTLPARLPNILLNGTT 184

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IP HN+ E+  AA+ L+ NPE+S+++L + I  PD PT   I+ S++ +  
Sbjct: 185 GIAVGMATDIPPHNLNEVVRAAVRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQA 244

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            Y  GRG +++RA + V    +    +++  +PYQV  +++ E+IA+L+I K++P + DI
Sbjct: 245 MYESGRGSYKMRAVYHV--DKQEKNLVIIDALPYQVSGNKIQEQIAKLMIEKKLPWVVDI 302

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES  +   RIVL  ++  +D D +M  +F  +D+ET + +NMN++ +   PQV  L  
Sbjct: 303 HDESDHENACRIVLELRSTRVDVDRVMSHLFASTDLETSYRVNMNMIGLNGKPQVKNLKE 362

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL+EWL  RR+V+ RR  FR+  ID+R+ IL GLLIAYL+IDE+I IIR ED PK  +++
Sbjct: 363 ILEEWLVSRRQVVTRRLLFRLDKIDKRLHILAGLLIAYLHIDEVIRIIREEDDPKTELMN 422

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R+ L+E Q +AIL++RLR L +L+E ++++E D L AE+  I  LL++ +   N +  E+
Sbjct: 423 RYDLSEVQANAILDIRLRQLARLQEIELRTEKDELEAERAIIQELLDNPESLTNLMIEEL 482

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  +   + G  R +         A  +  ++  EPIT ++S  GWIR+ K H VD
Sbjct: 483 E------ADMKEHGNNRVSPVVERNEATALKESDLVPSEPITAILSKAGWIRAAKGHDVD 536

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            + + ++ GDS +  + + + ++I ++ + G++Y + A  L S RG G+ +  ++     
Sbjct: 537 AAGMSYRSGDSYQAHIRSKSNEKIYIMDSTGRSYNIDAHTLASARGQGDPLTSVLKPASG 596

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
                    +   ++++ SS+G  FI     +  N + GK  +    + K+  V  +   
Sbjct: 597 ASFEQLLAGEDEQRIILASSQGYGFINTLGNLETNQKAGKNVINFDQDAKLLKVAYIDAK 656

Query: 659 --------------DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFK 704
                         D +AVV     LLIF ID++PE  RGKG +L + KDG     +   
Sbjct: 657 PISDEDTGSEAQAQDQIAVVTSAGYLLIFDIDELPEQQRGKGNKLINLKDGEQVIAVTPI 716

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                  + +  R       DL  + GKRG  G  +P+GF 
Sbjct: 717 HHSDSLTVTAGKRHVTLKPMDLANYTGKRGNRGGQLPRGFQ 757


>gi|56460468|ref|YP_155749.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR]
 gi|56179478|gb|AAV82200.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR]
          Length = 828

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 239/741 (32%), Positives = 360/741 (48%), Gaps = 50/741 (6%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+  DF   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+
Sbjct: 1   MSELRNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTE RM ++A  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+
Sbjct: 61  VDGDSAAAMRYTEIRMAKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTRVPNLLVNGS 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ + ALA+IDNP+I +E L+EYI GPDFPT   I   R  IV
Sbjct: 121 SGIAVGMATNIPPHNLTEVVDGALAMIDNPDIDVEGLMEYIPGPDFPTAATIS-GRSGIV 179

Query: 241 ESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           E+Y+ GRG   +RA+  +E +   G   I+VTEIPYQV K+RLIEKIAEL+  KR+  + 
Sbjct: 180 EAYKTGRGRIHLRAQAEIEVDEKTGKETIIVTEIPYQVNKARLIEKIAELVKEKRVEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            +RDES +D   ++    R    ++++  ++  + ++  F +NM  L     P++  L  
Sbjct: 240 ALRDESDKDGMRIVIEIRRGDVGEVVLNHLYANTQLQVVFGINMVALDK-GQPRLFNLRD 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---- 415
           +L  ++ HRREV+ RRS + ++    R  IL+GL I+  NIDEII +IR    P      
Sbjct: 299 MLDCFVRHRREVVTRRSVYELRKARERAHILEGLAISLANIDEIIELIRRSPTPAEAKAG 358

Query: 416 ---------------------------------VMVSRFSLTENQVDAILNLRLRSLRKL 442
                                            +    + LTE Q  AIL+LRL  L  L
Sbjct: 359 LIARAWQLGDVAAMLETAGVDAARPDHLPEEYGIRDGNYHLTEEQAQAILDLRLHKLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I  E   LL +  ++  +LNS ++    I  E+ E++  F                
Sbjct: 419 EHEKILDEYKGLLEQIAELLHILNSSERLMEVIREELVEIRNNFGDERKTDITAAAHDIS 478

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      +       V         + +      +A   K+ D ++    A+T D 
Sbjct: 479 MEDLINEEDVVLTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDEDFIERLWVANTHDT 538

Query: 563 ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVV 617
           IL  ST G+ Y +    L   S    G+ I  L+ L  ++ I        Y     +++ 
Sbjct: 539 ILCFSTRGRIYWMKVYQLPLASRASRGKPIVNLLPLEADERITAILPTRDYPEDKFVVMA 598

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           + KG        E       G   L +  ++++  V    G+  + +  +  K++ F+ +
Sbjct: 599 TRKGTIKKTPLPEYSRPRNGGIIALNLVDDDELIGVDITDGNGEIMLFSDAGKVVRFAEE 658

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFK---ICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           Q+  M R   GVR    ++G     +        E    +      Y +           
Sbjct: 659 QVRSMGRTATGVRGIRLEEGQRVVSLIVPREYEEEEANVLTVTENGYGKRTPLSEYPAKS 718

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           R   G +  K   R+G  + +
Sbjct: 719 RATKGVVSIKVSERNGSVVGA 739


>gi|295698301|ref|YP_003602956.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA]
 gi|291157473|gb|ADD79918.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA]
          Length = 845

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 251/797 (31%), Positives = 408/797 (51%), Gaps = 67/797 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V + V ++S+   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM ++G D+ + +
Sbjct: 4   VSKEVSSISIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKKLGNDYNSPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD SVYD++VRLAQPF  RY LI GQGNFG+IDGDSAAA RYT
Sbjct: 64  KKSARIVGDVIGKYHPHGDGSVYDAIVRLAQPFSMRYALIDGQGNFGSIDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM+++A+ IL+ ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGM T+IP
Sbjct: 124 EIRMSKIAQEILEDLEKNTVDFVPNYDGNEKIPDVMPTKIPNLLINGSSGIAVGMTTNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A LA I++ +I  E+L++YI GPDFPT  II E +E IV +YR G+G  +V
Sbjct: 184 PHNIVEVIDACLAYINDNDIQTEELVKYIRGPDFPTAAIIYEKKEQIVHAYRTGKGTIQV 243

Query: 253 RARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA   +  +       I++ EIPYQ+ K RLIEKI EL+  ++I  + ++RDES +D   
Sbjct: 244 RALTEIENDKKNNRTSIIIREIPYQINKIRLIEKIVELVKERKIDGIHEVRDESDKDGMR 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  + + ++ S++ L+ ++T   +NM  L     P ++ L  I+  ++ +R+E+
Sbjct: 304 VVIELKRESEANFVLNSLYALTRLQTSININMIALLK-GKPTLLNLKKIISSFIDYRKEI 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------- 415
           + +R+ F +    +RV  L+ ++I+  NID II++I+    PK                 
Sbjct: 363 VIKRTIFELNQAKKRVLSLEAMIISLKNIDFIISLIKGASTPKEARLRLTSFCWKLEETL 422

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     S +   E Q   IL+L+L+ L  LE+ ++  E  
Sbjct: 423 IELDRFYSKKKDWKNCFENHLDRFQKSNYRFNEEQAQTILDLKLQKLTNLEKEKVFEEYI 482

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           +L  E   +  +L +  +    I  E+  +K  +       +RRT   E    +    Q+
Sbjct: 483 SLTKEITSLVQILQNSNRLMEIIKNELIYIKNQYRD-----KRRTKIIE---DNSKFNQE 534

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I+K+ + V++SN+G+            K      S+   KE D +K  L   T + IL
Sbjct: 535 DLIKKKKVIVILSNQGYIKFQSISDYDIQKRGGKGKSSTRLKEKDFVKSVLVTDTHENIL 594

Query: 565 LLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
            +S  G+ +++    L         + I   + L   + I + F    +     +L+ + 
Sbjct: 595 CVSNFGRIFSIKVYQLPESSRFSLGKPIVNFLSLKDGEKITSIFSLKNFKKGNYILIATL 654

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
            G    +    +    + G   + ++  +++  +  V     + +   + K + FS + +
Sbjct: 655 MGLIKKISMDFLTKARKSGIIIINLNKRDEVIAMDSVKKRSEIILFTSSAKAIRFSENSV 714

Query: 679 PEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
               R   GV      KD  +  +I  +  +    +      Y     +       R   
Sbjct: 715 RLTGRKSMGVMGVKIQKDEKLVSMIIVEKDKD--ILTITENGYGNRTKESEYLKKSRFIR 772

Query: 737 GSLVPKGFPRSGKFLSS 753
           G  V K   R+GK + +
Sbjct: 773 GVSVIKNDERNGKIVGA 789


>gi|296284145|ref|ZP_06862143.1| DNA gyrase subunit A [Citromicrobium bathyomarinum JL354]
          Length = 941

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 242/843 (28%), Positives = 382/843 (45%), Gaps = 100/843 (11%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +  + +          + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A
Sbjct: 1   MSDETDTLTPPSPMGEYDRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
             E G   G  ++KSA+IVG+V+G  HPHGD ++YD+L R+ Q +  R PLI GQGNFG+
Sbjct: 61  SQEGGFVAGRPYRKSAKIVGDVMGNYHPHGDSAIYDALARMTQSWSMRVPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  A+ RYTEAR+ +VA  +L  +D+D VDF + Y+    EP V P+ FPNLL NG 
Sbjct: 121 MDPDPPASMRYTEARLEKVANALLDDLDKDTVDFAENYDGSREEPTVLPAGFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +  LA I NP I+ E+L+EYI GPDFPT   ++  +    
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDGCLAFIANPAITSEELIEYIPGPDFPTAP-LILGQSGAR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +RAR  VE        IV+T IPYQV K+ L+EKIAE    KRI  + D
Sbjct: 240 SAYLTGRGSIMMRARHEVETGRNDRQSIVLTSIPYQVGKNMLVEKIAEAAKDKRIEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES+ +   V+    R   P++++  ++  S  +  FP    +   G  P+V+ L  I
Sbjct: 300 IRDESSREGVRVVVDLKRDASPEVVLNQLWRYSPAQASFPA-NMLAIRGGRPEVLALRDI 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----- 415
           ++ +++ R +V+ RR+ F +     R  IL GL++A  N+DE++AIIR    P       
Sbjct: 359 IQAFISFREQVITRRTKFELNKARDRAHILLGLVVAVSNMDEVVAIIRGAANPAEARGKL 418

Query: 416 -------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         + L+E QV AIL+LRL  L  L   +I  E
Sbjct: 419 LRKEWPIGDIAQYIALVEAIEPSSDEHGGTYRLSERQVKAILDLRLHRLTALGRDEIGDE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           L  L  + E   S+L   ++ +  +  E++ +++ ++             E++ A     
Sbjct: 479 LKELATKIEYYLSILADRRKLYQVMREELQAIRDQYATPR--------MSEIAPAWDGVD 530

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALHFKEGDSLKIALHAHTTDR 562
            + +IE+E + V +++ G+I+    H            S++  K+ D++       T + 
Sbjct: 531 DEDLIEQEDMVVTVTHGGYIKRTPLHAFRAQARGGKGRSSMATKDEDAVVEMFVTSTHNP 590

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KL 614
           +L  +  G+ Y L    L  G    +   +  L+ L  ++ +                 +
Sbjct: 591 VLFFTNTGRVYRLKVWKLPEGSPTTKGRPMVNLLPLGEDERVTNVLPLPQDEAEWSKLNI 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKVTGD-HVAVVGENRKLL 671
           +  + +G                GK  +     S +++  V  +  D  + +  +  K +
Sbjct: 651 VFATEQGMVRRNSMDAFTRIPSNGKYAMGFVEDSGDRLIGVRLLNEDQEIFLASDAGKAI 710

Query: 672 IFSIDQIPEM-SR-GKGVRLQSYKDGGISDVICFK------------------------- 704
            F+     E  SR G GVR    K+G     +                            
Sbjct: 711 RFAATDARETKSRTGIGVRGMKLKEGDKVVSLAVLHPLSHDMETREAYLRGAVWKNNDTD 770

Query: 705 -----------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV---PKGFPRSGKF 750
                             +      Y +  +        RGG G      P    R+G  
Sbjct: 771 HTLDTELAQEMEENEEFILTLTANGYGKISSAYEYRTIGRGGQGITNIGEPSDSKRNGPV 830

Query: 751 LSS 753
           ++S
Sbjct: 831 VAS 833



 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 22/125 (17%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EEKMKLVVKVT-----GD 659
           + ++   +L +++ G   I    E     R G+    +    + K    V  +     G 
Sbjct: 781 MEENEEFILTLTANGYGKISSAYEYRTIGRGGQGITNIGEPSDSKRNGPVVASFPVRHGM 840

Query: 660 HVAVVGENRKLLIFSID---QIP----------EMSRG-KGVRLQSYKDGGISDVICFKI 705
            + +V +  KL+   ID    IP             RG  GV++     G    V   +I
Sbjct: 841 QLMLVTDQAKLIRLPIDFRHLIPDGFVNHKGWSIYGRGSSGVKVFDVAKGEQI-VGAARI 899

Query: 706 CEGLT 710
            E   
Sbjct: 900 DEDAD 904


>gi|301156479|emb|CBW15950.1| DNA topoisomerase IV, subunit A [Haemophilus parainfluenzae T3T1]
          Length = 740

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 275/743 (37%), Positives = 431/743 (58%), Gaps = 22/743 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR V
Sbjct: 1   MPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAAAKFKKSARTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++
Sbjct: 61  GDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 120

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++E++L  + +  VDF+  ++    EP   P++ P++L NGT+GIAVGMAT IP HN+ E
Sbjct: 121 ISEILLSELGQGTVDFQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINE 180

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +AA+ L+DNP+  ++ +L  I GPDFPT   I+  ++ I + Y  GRG  ++RA W  
Sbjct: 181 VADAAVMLLDNPKAGLDDVLNIIQGPDFPTEAEIISPKDDIRKMYETGRGSIKMRATWHK 240

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPK 316
           E+       I+++ +P+Q   S++I +IAE + AK++P++EDIRDE+  +   RIVL P+
Sbjct: 241 EDGE-----IIISALPHQSSPSKIIAQIAEQMTAKKLPMVEDIRDEADYENPVRIVLVPR 295

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D D LM  +F  +D+E  + +NMN++ +   P V  L  +L EWL  RR  + RR 
Sbjct: 296 SNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLQVLIEWLTFRRTTVTRRL 355

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+  +  R+ IL GL+IA+LNIDE+I IIR ED+PK V+++RF+L++ Q +AILNLRL
Sbjct: 356 QHRLDKVLARLHILDGLMIAFLNIDEVIEIIRTEDEPKQVLMARFNLSDEQAEAILNLRL 415

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L KLEE+Q+++E D L  E+  ++ +L S ++    I  EI+E  + ++       R 
Sbjct: 416 RHLAKLEEHQLQAEKDKLEEERSNLELILGSERRLNTLIKKEIQEDAKKYASP-----RM 470

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   E   A KA  +  M   EP+TV++S  GW+R  K H +D   L +K GD       
Sbjct: 471 SQLVEREEA-KAISESEMTPAEPVTVILSEMGWVRCAKGHDIDPEGLSYKAGDKYLAHAC 529

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
             +   ++ + + G++Y L   +L S R  GE +   + L     I    +     +LL+
Sbjct: 530 GKSNQPVIFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATIEQVIMEPEKQELLM 589

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV--GENRKLLIFS 674
            S  G  FI +  ++IA  + GK  + +    K+     ++     +V      ++LIF 
Sbjct: 590 ASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPETLSESTSLLVSLTSAGRMLIFP 649

Query: 675 IDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRSYNRSENDLLG 728
           +  +P +S+GKG ++ S      K      V  F I E  +    S  R       DL  
Sbjct: 650 VRDLPALSKGKGNKIISIPAANAKARSELLVKLFLISEQASLEFHSGKRKITLKPEDLQK 709

Query: 729 WLGKRGGVGSLVPKGFPRSGKFL 751
           +  +RG  GS +P+G   +   +
Sbjct: 710 FRAERGRKGSQLPRGLHSNVDIV 732


>gi|72080859|ref|YP_287917.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 868

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 236/755 (31%), Positives = 398/755 (52%), Gaps = 24/755 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ M+E+G+  G ++
Sbjct: 57  ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 116

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYT
Sbjct: 117 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 176

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++G+ ++ VDFR  Y+  + EP V P+KFPNLL +G SGIAVGM T IP
Sbjct: 177 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 236

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI  + +    NP+I I +L+  + GPDFPTG  I   ++ I ++Y  G+G F +
Sbjct: 237 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIY-GKKGINQAYLTGKGSFII 295

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+  EIPY+V+K  +IEK+A L+  K+I  ++D+RDES+     V
Sbjct: 296 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 355

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   +   P++++  ++  +D++  + +NM  L    VP++M L  I   +L H++E+ 
Sbjct: 356 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALV-NGVPKLMNLAQIFNYYLEHQKEIN 414

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            R  +F ++    ++ +L+G+ +A  NIDE+I II++       +  +   ++L   Q  
Sbjct: 415 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNPGQTK 474

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L  L   ++ +E++ L  E  +I S+++S K+  + I  + + V   F   
Sbjct: 475 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDP 534

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALHF 545
               RR     E+   D+  L           +   V        R      +   A + 
Sbjct: 535 ----RRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMALDEYRLQNRGGIGTLASNH 590

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
            + D LK     +T   +L++S+  K + L A  +  G   G+   I  LI L  N+ I 
Sbjct: 591 YKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIKLEKNESIS 650

Query: 604 TAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
               ++       L+ VS+ GN      S     T+ GK  LK++  + +        + 
Sbjct: 651 NLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLAENDYLVSAFIAPNNP 710

Query: 660 --HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             ++ +      +  +SI  + +  R   GV+    ++G      CF   +       + 
Sbjct: 711 DLNILIGSSQGFVNRWSIKLLRDSGRTAIGVKGIKLEEGHKIIGACFAF-DNNFIFSLSK 769

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + + +        L  R   G +      ++G  +
Sbjct: 770 KGFGKKTQVGEYRLTGRTTKGLMSLDA-KKAGNLV 803



 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMK 651
           I L     I+ A        +  +S KG     +  E     R  K  + + +++   + 
Sbjct: 744 IKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKKAGNLV 803

Query: 652 LVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +  +  +  A++  +    +   +D +P +SR  KGV++ + K G     +  
Sbjct: 804 FISAIKNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSL 857



 Score = 42.1 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 3/125 (2%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           + +  +  +EG  +  A  A   + I  LS  G       G         + +   +D  
Sbjct: 739 IGVKGIKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMS-LDAK 797

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVK 655
              ++V      +  + ++ + KG A  ++     II+   KG   + +   +++  V  
Sbjct: 798 KAGNLVFISAIKNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSL 857

Query: 656 VTGDH 660
           ++ + 
Sbjct: 858 ISKNE 862


>gi|254417991|ref|ZP_05031715.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3]
 gi|196184168|gb|EDX79144.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3]
          Length = 927

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 255/863 (29%), Positives = 398/863 (46%), Gaps = 120/863 (13%)

Query: 1   MGVDNISNSNTLV-----EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHR 55
           M  D+  N+ T +       ++  +++   L+  YL YA+S I  RA+PD RDG KPVHR
Sbjct: 1   MTDDSYENAATPIVPGGGGSDISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHR 60

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+++M ++ +    ++ K AR+VG+V+G+ HPHGD SVY +LVR+AQPF     L+ GQ
Sbjct: 61  RILYSMHDLNMTPERSYSKCARVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLVDGQ 120

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           GNFG++DGD  A+ RYTEA+M   A  ++  +D+D VDF+  Y+E++ EPVV PS+ PNL
Sbjct: 121 GNFGSVDGDMPASMRYTEAKMAPAAVALMADIDKDTVDFQPNYDEKELEPVVLPSRIPNL 180

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           L NG  GIAVGMAT+IP HN+ E+ +AALAL+D+P ++ + LL+ + GPDFPTGG I   
Sbjct: 181 LVNGAGGIAVGMATNIPPHNLGEVVDAALALLDDPNVTDDALLDIVPGPDFPTGGEI-MG 239

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R +   + R GRG   VR R  VEE+ +    IVVTE+PYQV K  LIE+IAE++  KR+
Sbjct: 240 RTAPRNALRDGRGSVIVRGRASVEEIRKDREAIVVTELPYQVNKQTLIERIAEMVREKRL 299

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + D+RDES      ++    R    D+++  ++  + M++ F +NM  L+    P+ M
Sbjct: 300 EGISDVRDESDRQGMRIVIELKRDASGDVILNQLWRYTAMQSSFGVNMLALNH-GRPEQM 358

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  +L+ +L  R EV+ RR  F +     R  +L GL +A  NIDE+I IIR+   P  
Sbjct: 359 GLRDLLQIFLDFREEVVVRRVKFELNKARDRGHVLVGLAVAVANIDEVIHIIRSSADPTE 418

Query: 416 -----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
                                        +      LT+ Q  AIL L L  L  L    
Sbjct: 419 ARERLQAKPWPVGDMMALVELIADPRSVVINGDSLQLTDEQARAILALTLSRLTGLGRDD 478

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I  E + L    +   ++L+  K     I  ++ +VK+ F+       RRT   E     
Sbjct: 479 IFGEANGLADTIQGHLTILSDRKNVLAIIRDDLIDVKDKFAVP-----RRTLIGEGDGEM 533

Query: 507 KATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAH 558
           +    + +I +E + V +++ G+++                 S +  K+ D++     A 
Sbjct: 534 E---DEDLIPREDMVVTVTHGGYVKRVALNAYRTQHRGGKGKSGMTMKDEDAITGVFSAS 590

Query: 559 TTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC---- 612
           T   +L  +T+GKAY L    L   + +  G+A   L+ +     I+             
Sbjct: 591 THTPVLFFATNGKAYKLKTWRLPLGNPQSRGKAFVNLLPIEPGDSIMNVLPLPEDETTWG 650

Query: 613 --KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRK 669
              ++  +S G+    + S+     R GK  +K+  +++M  V   T  D V +     +
Sbjct: 651 DYDIMFATSSGDVRRNKLSDFATVNRAGKIAMKLEGDDRMVGVGLCTADDDVLLTTALGR 710

Query: 670 LLIFSIDQIPE-MSR-GKGVRLQSYKDGGISDVICF------------------------ 703
            + F  D +     R   GVR    +DG     +                          
Sbjct: 711 AIRFKADDVRVFKGRDSTGVRGVRLQDGDEVISMAILGRVDATPEERSAYVKHANAMRKA 770

Query: 704 -------------------KICEGLTWIDSAGRS-------------YNRSENDLLGWLG 731
                                   LT    A                + +  +       
Sbjct: 771 LAGAEAEEDVAAPAEAEDEVADAALTVERIAELGAAEQFILTVTETGFGKRSSAYEYRRT 830

Query: 732 KRGGVGSLVPKGFPRSG-KFLSS 753
            RGG G        R+G +  ++
Sbjct: 831 GRGGQGLTAHGLGGRAGTRLAAA 853



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKV--SSEEKMKLVVKVTG-DHVAVV 664
           +   +L V+  G        E     R G   T   +   +  ++     V   D + +V
Sbjct: 806 AEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGTRLAAAFPVEETDDLLLV 865

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
               +++   +DQ+  + R  +GV +  ++ G    V+  +
Sbjct: 866 TSGGQMIRTRMDQVRIVGRSSQGVTI--FRTGKDEKVVSVE 904



 Score = 37.8 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTCKLLVVSS 619
             IL ++  G      A         G+ +    +       +  AF  + T  LL+V+S
Sbjct: 808 QFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGTRLAAAFPVEETDDLLLVTS 867

Query: 620 KGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG----DHVAVVGENR 668
            G        +  I+  + +G T  +   +EK+  V ++      D   V  E  
Sbjct: 868 GGQMIRTRMDQVRIVGRSSQGVTIFRTGKDEKVVSVERLPESGGSDEADVASEEG 922


>gi|269217829|ref|ZP_06161683.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212764|gb|EEZ79104.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 862

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 225/784 (28%), Positives = 371/784 (47%), Gaps = 55/784 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S         +K V L+  +E+ YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G
Sbjct: 1   MSEDTVYNHGLIKGVDLQREMEKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                +F KSA++VG+V+G  HPHGD ++YD++VRL QP+  RYPL++GQGNFG      
Sbjct: 61  YRPDNSFSKSAKVVGDVMGHYHPHGDVAIYDTVVRLVQPWSMRYPLVAGQGNFGTPGDLG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM  +A  +++ + E  VDF   Y+    EP V  S+FPNLL NG+ GIAV
Sbjct: 121 AAAPRYTEVRMAPLAMEMVRDIKEQTVDFEPNYDGSLLEPTVLTSRFPNLLVNGSEGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT IP HN++E+       ++NP+ + E+    L++ I GPDFPTG  ++     I +
Sbjct: 181 GMATRIPPHNLREVAAGVQWYLENPDATKEELLAALIQRIKGPDFPTGA-LILGTRGIED 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            YR G G    RA   V+E+  G  C+VVT++PYQV   RL++K+ E I   R+P + DI
Sbjct: 240 MYRTGHGSITQRAVVEVDEI-HGRQCLVVTDLPYQVNPDRLLDKMVEGIKDGRLPGIADI 298

Query: 302 RDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           RDE++    + ++    +     +++ +++  + ++  FP NM  L    VP+ + LDG 
Sbjct: 299 RDETSGRAGQRIVVVLKKDAVAKVVLNNLYKHTQLQNNFPANMLALVD-GVPRTLSLDGF 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           ++ W+  + EV+ RR+ +R+    +R+ IL G L A   +D +IA+IR+       +  +
Sbjct: 358 VRHWVTFQMEVILRRTEYRLGEALKRLHILGGYLKALDQLDAVIALIRSSQTVDLARTGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E+Q +AIL ++LR L  LE  +I  E +   A       ++   ++Q   I  
Sbjct: 418 MDLLEIDEDQANAILEMQLRRLAALERQKIIDEYEEKAALVADYKDIIAKPERQRAIIGE 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+  + + +        RRTT             + +I +E + V I+  G+I+  K+  
Sbjct: 478 ELGAIVDKYGD-----DRRTTILPFDGEMS---VEDLIPEEDVVVTITRGGFIKRTKTSE 529

Query: 538 V--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE- 588
                     +     +  D ++      T +  L  +  G+ Y +    +       + 
Sbjct: 530 YRAQHRGGKGIKGASLRGDDVVEHFDVGSTHEWHLFFTNLGRVYRIKGYEIPEAGRDAKG 589

Query: 589 -AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  L+     + I +      YD    L++ ++ G       S+  +    G   +K+
Sbjct: 590 QHIANLLAFQPGETIASTITLKGYDQAQYLVLATADGLVKKTRLSDYDSPRTGGLIAIKL 649

Query: 645 SSEEKMKLVVKVTGDHVAVV------------GENRKLLIFSIDQ--IPEMSR-GKGVRL 689
                         DHV                     L F      +  M R   GV  
Sbjct: 650 RENGN-------GTDHVVAACLVDEDDDLLLVSRKGMSLRFKATDEALRPMGRPSSGVTG 702

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
             +++G  S +    + +           + +  +     +  R G+G  V K     G 
Sbjct: 703 MKFREGD-SLLTMRVVRDNAEVFVVTEGGFAKRTSVDEYRIQGRAGLGIKVAKLTEERGD 761

Query: 750 FLSS 753
            + +
Sbjct: 762 LVGA 765



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 5/145 (3%)

Query: 567 STDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
           S  G +    A +      G   +    +       ++T  V     ++ VV+  G A  
Sbjct: 675 SRKGMSLRFKATDEALRPMGRPSSGVTGMKFREGDSLLTMRVVRDNAEVFVVTEGGFAKR 734

Query: 626 VEESEIIANTRKG--KTFLKV-SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
               E     R G      K+      +   +   G+ V V+ E+ K++  S  ++ +  
Sbjct: 735 TSVDEYRIQGRAGLGIKVAKLTEERGDLVGALITEGEDVMVIMESGKVMRASAAEVSKTG 794

Query: 683 R-GKGVRLQSYKDGGISDVICFKIC 706
           R  +GV       G     I   I 
Sbjct: 795 RNTQGVTFARPDGGDRIIAIARNIE 819


>gi|160902696|ref|YP_001568277.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95]
 gi|160360340|gb|ABX31954.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95]
          Length = 813

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 251/765 (32%), Positives = 411/765 (53%), Gaps = 35/765 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++ +        L+  YL Y+LS I  RAIPD+RDG KPV RRI+++MSE+GL   ++F
Sbjct: 1   MDDKIFIKDFTEELKTSYLLYSLSVIVSRAIPDVRDGLKPVQRRILYSMSELGLKHNSSF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVGEV+GK HPHGD ++YD+LVR+ QPF  RYPL+  QGNFG+IDGD  AA RYT
Sbjct: 61  KKNARIVGEVMGKYHPHGDAAIYDALVRMGQPFTMRYPLVEAQGNFGSIDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM ++ E +L+ ++++ VDFR+ ++   SEPVV P+  PNLL NG SGIAVGM T+IP
Sbjct: 121 EARMPELGEYMLKDIEKETVDFRENFDGSLSEPVVLPTMVPNLLMNGASGIAVGMTTNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   LI+ PE  +  LL++I GPDFPTGG +V+  E + E Y  GRG   +
Sbjct: 181 PHNLNELVAALKLLIEKPESEVADLLKHIKGPDFPTGGQVVDG-EGLKELYETGRGKITI 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE----LIIAKRIPLLEDIRDESAED 308
           R ++ +E+ G+G   IV  EIPY V K+ +IE+I          K+   ++D+RDES ++
Sbjct: 240 RGKYRIEDEGKG-TSIVFDEIPYNVSKADIIEQIVRYVVKAKEQKKDVGIKDVRDESDKE 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    ++ +   L+  +F  +++++ F + MNV+   + P +M L G+L+ +L HR
Sbjct: 299 GIRLVIELRKNANVKKLINDLFKHTNLQSYFYVQMNVIDNEK-PSLMNLKGLLQSFLDHR 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTE 425
             V+ RR+ + ++   +R  I++GL+ A   ID ++ IIRN + P+     +     ++E
Sbjct: 358 VNVITRRTKYELEKARKRAHIVEGLIKAVQGIDTVVEIIRNSENPQEALKNLQETIGVSE 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AI ++RL SL KLE   +  EL NL  + E    +L   ++    I  E+ EV   
Sbjct: 418 EQAKAIADMRLISLSKLESTNLSEELKNLYKDIENAMDILQKKERLLGVIKEELDEVANK 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
           F       +RRT             +  MI+ E + +V++  G+++++ S          
Sbjct: 478 FGD-----KRRTEIL--YNKGDLAEEVEMIQDEDVVIVLTKWGYLKAIPSSEYKVQGRGG 530

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
             +  L   + D +K  ++ +   +++L S+ GKAY + A  + +      G+ I   I 
Sbjct: 531 KGVKGLKISDEDDVKEVIYTNKLSKLMLFSSAGKAYQINAYEIETTLKNTKGKHIANFIS 590

Query: 596 LNHNQDIVTA----FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           L+  ++I +        D    +L+ + +G        E  +    G   + +  ++ + 
Sbjct: 591 LDEGEEIKSIVAISLDGDYDKDILIFTKQGKVKRTSLREFSSARASGIRAINLVDKDVVV 650

Query: 652 LVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            VV + G    + +V +    L+F+  Q+  M R   GV     ++G    +   K+ EG
Sbjct: 651 DVVLLDGSDRDLLIVTKLGMSLMFNSSQVRTMGRTAMGVNSIKLREGDEV-INVVKVDEG 709

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +    R Y +  +        RGG+G    +   R G  +++
Sbjct: 710 KKLLLITERGYGKRVSFHSYKPQNRGGIGVKTVRDISRIGPIVAT 754



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 6/124 (4%)

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             I L    +++     D   KLL+++ +G    V         R G     V    ++ 
Sbjct: 690 NSIKLREGDEVINVVKVDEGKKLLLITERGYGKRVSFHSYKPQNRGGIGVKTVRDISRIG 749

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKI 705
            +V       G  + +  +  K +  +++ I  + R  +GV +    +   +   I  + 
Sbjct: 750 PIVATMSVEDGRDILIFTKKGKAIRVNVNNINVLGRITQGVIIVRLDEDDSVVGAIEVQA 809

Query: 706 CEGL 709
            +  
Sbjct: 810 NDEE 813


>gi|170719131|ref|YP_001784279.1| DNA topoisomerase IV subunit A [Haemophilus somnus 2336]
 gi|168827260|gb|ACA32631.1| DNA topoisomerase IV, A subunit [Haemophilus somnus 2336]
          Length = 747

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 272/746 (36%), Positives = 443/746 (59%), Gaps = 22/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           NT+  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   NTINYEGIEQMPLRQFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  V+++  ++    EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLSELGQGTVNYQANFDGTLEEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + L+DNP   +++L+  + GPDFPT   I+  +E I + Y  GRG
Sbjct: 182 TDIPPHNLNEVADATIMLLDNPNADLDQLMTALQGPDFPTEAEIISPKEEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W      + +  I++T +P+Q   S+++ +IAE +  K++P++EDIRDE+  +
Sbjct: 242 SIKMRAVW-----KKENGEIIITALPHQSSPSKIVAQIAEQMQNKKLPMVEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRLVIVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKNLVQILTEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR  +R+  +  R+ IL GLLIA+LNIDEII IIRNEDKPK ++++RF+LT+ 
Sbjct: 357 FRRQTVTRRLQYRLDKVLARLHILDGLLIAFLNIDEIIEIIRNEDKPKEILIARFNLTDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILNLRLR L KLEE ++++E +NL  E+  ++ +LNS  +  N I  EI++  + F
Sbjct: 417 QAEAILNLRLRHLAKLEEQELQAEKNNLAKERNSLEQILNSEIRLNNLIKKEIQQDAKTF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E + A KA  +  M   EPIT+++S  GW+R  K H ++  AL +K
Sbjct: 477 ASP-----RLSPLVERAEA-KAISETDMTPSEPITIILSEMGWVRCAKGHDINARALSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+        +   ++ + + G++YTL   +L S R  GE +   + L     I    
Sbjct: 531 TGDNYLTHACGKSNQPVVFIDSTGRSYTLDPLSLPSARSQGEPLTGKLTLPSGATIEHLL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-- 664
           + +    LL+ S  G  FI +  ++++  + GK  + +     +   + +      +V  
Sbjct: 591 IENENQSLLMASDAGYGFICKFEDLVSRNKAGKAVISLPENANVLPPLVLQNSTALLVAL 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICEGLTWI-DSAGRS 718
               ++L+F +  +PE+S+GKG ++      + K+     V  F I E  + +  +  R 
Sbjct: 651 TSMNRMLVFPVADLPELSKGKGNKIIHIPAANAKERSELLVKLFLISEKTSLVFHAGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                 D+  +  +RG  GS +P+G 
Sbjct: 711 VTLKPEDIRKFRAERGRKGSPLPRGL 736


>gi|301170269|emb|CBW29874.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae 10810]
          Length = 747

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 274/749 (36%), Positives = 436/749 (58%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M+  EP+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 ASP-----RMSQLVEREEA-KMISESDMMPAEPVTVILSEMGWVRCAKGHDIDPKSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 651 TSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRAERGRKGSTLPRGLHTN 739


>gi|291484421|dbj|BAI85496.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. natto
           BEST195]
          Length = 806

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 381/754 (50%), Gaps = 24/754 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+
Sbjct: 4   PELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSPIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +A +  I  P  S+++L+E I GPDFPTGG I++  + I ++Y  G+G   +R
Sbjct: 184 HHLGEVIDAVIKRIQMPSCSVDELMEVIKGPDFPTGG-IIQGVDGIRKAYETGKGKIIIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E +  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+
Sbjct: 243 GKAEIETIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D   ++  ++  +D++  +     V    R P +M L  IL  ++ H++EV+ 
Sbjct: 303 IELKKEADAKGILNFLYKNTDLQITYNF-NMVAIHNRRPMLMSLPSILDAYIGHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
            RS + +Q    R  I++GL+ A   +DE+IA IR+    +    +   ++  TE Q +A
Sbjct: 362 NRSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +   +K E + L  + E+++S+L++ K+    I   ++ +K+ ++   
Sbjct: 422 IVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYAD-- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R +  E    +     + M+  E + V ++  G+++     S    +      K+
Sbjct: 480 ----TRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D +      +TTD +LL +  G     P   L   R          LI ++ ++ IV A
Sbjct: 536 TDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-H 660
                +D +  LL  +  G     E +   A    K    L +  E+++  V    G+  
Sbjct: 596 IPIKEFDPSAYLLFFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELIDVHVTNGESQ 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +       L F  D++  +  R  GV+  + K+     V    + +  + +    R  
Sbjct: 656 IFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFV-VSGEILQQSDSIVLFTQRGA 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
            +  +        R   G ++ +   ++  + ++
Sbjct: 715 VKRMSLSEFEKTSRAKRGVVMLRELKKNPHRVVA 748


>gi|221309698|ref|ZP_03591545.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314020|ref|ZP_03595825.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318942|ref|ZP_03600236.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323216|ref|ZP_03604510.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767425|ref|NP_389692.2| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|239938679|sp|Q45066|PARC_BACSU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|2558947|gb|AAB81615.1| ParC [Bacillus subtilis]
 gi|225185052|emb|CAB13693.2| subunit A of DNA topoisomerase IV [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 806

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 381/754 (50%), Gaps = 24/754 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+
Sbjct: 4   PELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSPIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +A +  I  P  S+++L+E I GPDFPTGG I++  + I ++Y  G+G   +R
Sbjct: 184 HHLGEVIDAVIKRIQMPSCSVDELMEVIKGPDFPTGG-IIQGVDGIRKAYETGKGKIIIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E +  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+
Sbjct: 243 GKAEIETIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D   ++  ++  +D++  +     V    R P +M L  IL  ++ H++EV+ 
Sbjct: 303 IELKKEADAKGILNFLYKNTDLQITYNF-NMVAIHNRRPMLMSLPSILDAYIGHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
            RS + +Q    R  I++GL+ A   +DE+IA IR+    +    +   ++  TE Q +A
Sbjct: 362 NRSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +   +K E + L  + E+++S+L++ K+    I   ++ +K+ ++   
Sbjct: 422 IVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYAD-- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R +  E    +     + M+  E + V ++  G+++     S    +      K+
Sbjct: 480 ----TRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D +      +TTD +LL +  G     P   L   R          LI ++ ++ IV A
Sbjct: 536 TDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-H 660
                +D +  LL  +  G     E +   A    K    L +  E+++  V    G+  
Sbjct: 596 IPIKEFDPSAYLLFFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELIDVHVTNGESQ 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +       L F  D++  +  R  GV+  + K+     V    + +  + +    R  
Sbjct: 656 IFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFV-VSGEILQQSDSIVLFTQRGA 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
            +  +        R   G ++ +   ++  + ++
Sbjct: 715 VKRMSLSEFEKTSRAKRGVVMLRELKKNPHRVVA 748


>gi|77165745|ref|YP_344270.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707]
 gi|254434978|ref|ZP_05048486.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27]
 gi|76884059|gb|ABA58740.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707]
 gi|207091311|gb|EDZ68582.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27]
          Length = 747

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 284/754 (37%), Positives = 445/754 (59%), Gaps = 23/754 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N  +  +V+   L    E+ YL Y++  I +RA+P L DG KPV RRII+AMSE+GL  G
Sbjct: 2   NISMNPDVEERPLGEFAEKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGLSAG 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI+GQGN+G+ D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQQFSYRYPLIAGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   AEL+L  V +  V++   ++    EP + P++ P++L NGT GIAVGMA
Sbjct: 122 MRYTEARLAPFAELLLSEVGQGTVNWAPNFDGTLQEPRLLPARVPHVLLNGTMGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+  A L L+  P  ++ +L EY+ GPD+PT   I+    ++V+ Y  G+G
Sbjct: 182 TDIPPHNLHEVTAACLHLLKYPNATVAELCEYLPGPDYPTEAEIITPSAALVKMYETGQG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA++ VE+       IVV  +P+QV  +R++E+IA+ + AK++P+L D+RDES  +
Sbjct: 242 SVRLRAQYMVEQGN-----IVVNALPHQVSGARVLEQIAQQMQAKKLPMLADLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P  R +D + +M  +F  +D+E  + +N+NV+ +   PQV  L  +L EW  
Sbjct: 297 NPTRLVLVPYARRMDVETVMSHLFATTDLERSYRVNLNVIGLDGRPQVKNLRDLLGEWFY 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R E L RR  +R++ ++ R+++L GLLIAYLNIDE+IAIIR+E+ PKPV+++RF L++ 
Sbjct: 357 FRIETLRRRFRYRLEKVEDRLQVLAGLLIAYLNIDEVIAIIRDEEAPKPVLMARFKLSDR 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L +LEE +I++E   L AE++ ++ +L S  +  + +  E+    + F
Sbjct: 417 QAEAILELKLRYLARLEETKIRAENKALAAERKGLEKMLGSESRIKDLLRQELLADAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             +     RR+   E S A     +Q+++  E ITVV+S +GW+R+ KS  V+ +AL ++
Sbjct: 477 GDA-----RRSPIVERSSA-TVLDKQSLLPAELITVVLSEKGWVRAAKSQDVNPAALSYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + +    +    + L + G++YTLPA  L S RG GE +   + +    + +   
Sbjct: 531 TGDSYRASARGRSNQSAIFLDSTGRSYTLPAHGLPSARGQGEPLSGHLQVAPGAEFIAIL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
           + +     L+ S+ G  F+ +   +    R GK  L VS+  K    V VT    D VAV
Sbjct: 591 LAEPEEFYLMASNAGYGFLCQARHLYTKNRAGKAVLNVSAGAKALPPVPVTDRELDQVAV 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQS-----YKDGGISD-VICFKICEGLTWIDSAGR 717
                +LL+F +  +P ++RGKGV+L +        G  +   +      G   + +  R
Sbjct: 651 ATNVGRLLLFPLRDLPFIARGKGVKLINISSTRLAQGQEAVRALAVVSQGGALQVFAGRR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                  DL  + G+R   G  +P+GF +  + +
Sbjct: 711 HLTLKSEDLEPYQGERARRGLTLPRGFQQVERMV 744


>gi|1405462|emb|CAA97607.1| GrlA [Bacillus subtilis subsp. subtilis str. 168]
          Length = 806

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 381/754 (50%), Gaps = 24/754 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+
Sbjct: 4   PELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSPIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +A +  I  P  S+++L+E I GPDFPTGG I++  + I ++Y  G+G   +R
Sbjct: 184 HHLGEVIDAVIKRIQMPSCSVDELMELIKGPDFPTGG-IIQGVDGIRKAYETGKGKIIIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E +  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+
Sbjct: 243 GKAEIETIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D   ++  ++  +D++  +     V    R P +M L  IL  ++ H++EV+ 
Sbjct: 303 IELKKEADAKGILNFLYKNTDLQITYNF-NMVAIHNRRPMLMSLPSILDAYIGHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
            RS + +Q    R  I++GL+ A   +DE+IA IR+    +    +   ++  TE Q +A
Sbjct: 362 NRSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +   +K E + L  + E+++S+L++ K+    I   ++ +K+ ++   
Sbjct: 422 IVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYAD-- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R +  E    +     + M+  E + V ++  G+++     S    +      K+
Sbjct: 480 ----TRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D +      +TTD +LL +  G     P   L   R          LI ++ ++ IV A
Sbjct: 536 TDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-H 660
                +D +  LL  +  G     E +   A    K    L +  E+++  V    G+  
Sbjct: 596 IPIKEFDPSAYLLFFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELIDVHVTNGESQ 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +       L F  D++  +  R  GV+  + K+     V    + +  + +    R  
Sbjct: 656 IFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFV-VSGEILQQSDSIVLFTQRGA 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
            +  +        R   G ++ +   ++  + ++
Sbjct: 715 VKRMSLSEFEKTSRAKRGVVMLRELKKNPHRVVA 748


>gi|329123548|ref|ZP_08252111.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus aegyptius
           ATCC 11116]
 gi|327470364|gb|EGF15822.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus aegyptius
           ATCC 11116]
          Length = 747

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 275/749 (36%), Positives = 435/749 (58%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 A-----SSRMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 651 TSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRAERGRKGSTLPRGLHTN 739


>gi|315122780|ref|YP_004063269.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496182|gb|ADR52781.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 909

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 248/852 (29%), Positives = 394/852 (46%), Gaps = 112/852 (13%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++I  ++   E+ + +VS+   ++  YL YA++ I  RAIPDLRDG K VHRRI+  M +
Sbjct: 3   EHIVPNDEEGEKGITSVSIVEEMQNSYLTYAINVILGRAIPDLRDGLKSVHRRILFGMMQ 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MG+++   + K ARI GEV+GK HPHG+ ++YD+L R+AQ +  R  LI GQGNFG+IDG
Sbjct: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSIDG 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTE R+ + A  +L  + +D VDFR  Y+    EPVV  +KFPNLL NG  GI
Sbjct: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAKFPNLLVNGAGGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP+HN+ E+ E  +ALIDNP+I ++ +++ I+GPDFPTG II+  R  I  +Y
Sbjct: 183 AVGMATNIPTHNLGEVIEGCIALIDNPDIDLDDMMKIILGPDFPTGAIIL-GRSGIRSAY 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +R    +E+       I+VTEIPYQV KS ++EKIAEL+  KRI  + D+RD
Sbjct: 242 ATGRGSIVIRGVTHIEKTEGDREKIIVTEIPYQVNKSAMLEKIAELVREKRIVDISDLRD 301

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      V+    R    D+++  ++  + +++ F +NM  L+ G  P+   L  ILK 
Sbjct: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIEILKN 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------- 412
           ++A R EV+ RR+ + +     R  +L GL IA  N+DE++ IIR               
Sbjct: 361 FIAFREEVVGRRTKYLLNKARDRAHVLVGLAIAVSNLDEVVRIIRFSPNPESARRELMQR 420

Query: 413 ------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                    +  L+E Q  AIL LRL  L  L    I+ EL++L
Sbjct: 421 NWNAVDIKDLIDLIDDSSYTINSDGKMYLSEVQTRAILELRLARLTGLGRDDIRDELNSL 480

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
             E +    +L+S  +  N I  E++ +K+          RRT   +     +    +  
Sbjct: 481 GTEIKDCLEILSSRSRLLNIIKQELKFIKDELDTP-----RRTEIVDGLLDME---DEDC 532

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I +E + V +S+ G+++          +      S +  +  D +      +T   +L  
Sbjct: 533 IVREDMVVTVSHFGYVKRVPLSLYRAQRRGGKGRSGVVTRNEDFVTDLFIVNTHTPVLFF 592

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVS 618
           S+ G  Y      L   S +  G+A+  ++ L   + I T               ++  +
Sbjct: 593 SSLGFVYKEKVWRLPIGSPQSRGKALINILSLQQGERITTIMPLPEDESSCSDLYVVFAT 652

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ 677
             GN    + S+ +   R GK  +K+   +++  V     G+ V +  +  + + F+I  
Sbjct: 653 KLGNVRRNKLSDFVQVNRSGKIAMKLDEGDEILSVETCMEGNDVLLTTKLGQCIRFAITD 712

Query: 678 IPEM-SRGK-GVRLQSYKDGGISDVICFKI------------------------------ 705
           +     R   GVR     +      +   +                              
Sbjct: 713 VRVFSGRNSVGVRGIVLAEDDQVISMAIVLHADADYDERVCYMKYMASHRRLIASDIDEG 772

Query: 706 ----------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                  +    +  + + + +  +     +  RGG G L    
Sbjct: 773 GVLKNDSSIEGKISEERCKELKSKEQFILTVSEKGFGKRTSSYDFRISSRGGKGILATDT 832

Query: 744 F--PRSGKFLSS 753
                 G  +S+
Sbjct: 833 SKMDEIGPLISA 844



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL-----KVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS KG        +   ++R GK  L     K+     +     V   D + +V
Sbjct: 797 EQFILTVSEKGFGKRTSSYDFRISSRGGKGILATDTSKMDEIGPLISAFPVNDKDQIILV 856

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            +   L+   ++ I   SR  KGV + S        V+  +       ID + 
Sbjct: 857 SDKGTLIRVPVNDIRIASRSTKGVVIFSTAKDER--VVSVERISESDIIDVSE 907


>gi|83858658|ref|ZP_00952180.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633]
 gi|83853481|gb|EAP91333.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633]
          Length = 923

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 251/830 (30%), Positives = 379/830 (45%), Gaps = 114/830 (13%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   ++  YL YA+S I  RAIPD RDG KPVHRRI+ AM E G     A+KKSA +V
Sbjct: 14  VAIEDEMKRSYLDYAMSVIVSRAIPDARDGLKPVHRRILWAMHEGGYSKDKAYKKSANVV 73

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G+ HPHGD ++YD+L R+AQPF    PL+ GQGNFG++DGD  AA RYTE RM   
Sbjct: 74  GDVMGRYHPHGDSAIYDALARMAQPFSMGLPLMDGQGNFGSMDGDPPAAMRYTEIRMDHP 133

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L  +D+D V+FRD Y+    EPVV P+++PNLL NG  GIAVGMAT+IP HN+ E+
Sbjct: 134 AEALLADIDKDTVEFRDNYDGSKQEPVVLPARYPNLLVNGAGGIAVGMATNIPPHNLNEV 193

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +AL+D P+I+  +LLE++  PDFPTGG I+  R    ++   GRG   +RA+  +E
Sbjct: 194 VDATVALLDQPDITDTELLEFVPAPDFPTGGEII-GRSGARKALLEGRGSVILRAKTSIE 252

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           ++ +G   I+V EIPYQV K+ ++EKIAEL+  KRI  + D+RDES      V+    + 
Sbjct: 253 DIRQGREAIIVHEIPYQVNKATMVEKIAELVRDKRIEGISDLRDESDRSGVRVVIELKKD 312

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + ++++  ++  S ++T F +NM  L  G  PQ   L   L+ ++ HR+EV+ RR+ F 
Sbjct: 313 ANAEVILNQLYRWSPLQTSFGVNMLALI-GGRPQQAGLRVFLETFIHHRKEVVVRRTKFD 371

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----------------- 422
           ++    R  +L GL +A  NIDEIIA+IR    P+                         
Sbjct: 372 LRKARDRAHVLIGLAVAVANIDEIIALIRRAPDPQTARQQLRDKAWPAKDVAPLVELVAD 431

Query: 423 -----------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                      LTE Q  AIL+LRL  L  L   +I  E + L      +  +L S  + 
Sbjct: 432 PRSQIRDGEIRLTEEQAKAILDLRLHRLTALGRDEIGDEANKLAETIADLLDILRSPTRI 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
            + I  E+ + K  F        RR+   E    D     + +I +E + V +++ G+++
Sbjct: 492 RDIIRNELLDSKASFGVE-----RRSAIIE---GDLGIEDEDLIPREDMVVTLTHGGYVK 543

Query: 532 S--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                            + +  K+ D +     A T   +L  S+DG  Y      L  G
Sbjct: 544 RTALSTYRAQNRGGKGRAGMAMKDEDFVATLFVASTHAPLLFFSSDGMVYKTKTWRLPLG 603

Query: 584 RGHGEAIQLL---IDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIAN 634
             + +   L      LN    I +               ++  ++ G     + S+ +  
Sbjct: 604 APNTKGKYLTNLLPSLNDGAWITSVMALPEDEESWDQYDVMFATTAGTVRRNKLSDFVQV 663

Query: 635 TRKGKTFLKVS-SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQ 690
            R GK  +K+     K+  V     D  V +V    + + F +  +    SR   GVR  
Sbjct: 664 NRNGKIAMKLDEEGSKILDVRLCNEDQDVLLVSAGGRAIRFPVGDVRVFASRNSTGVRGI 723

Query: 691 SYKDGG-----------------------------------ISDVICFKICEGLT----- 710
             K+                                       D +     +G       
Sbjct: 724 RLKENDRLISMAILNHIDVTTDEARAYMRHANAMRRAAGLEEDDAVVSAPEDGEAGADVA 783

Query: 711 ---------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                           +  A     +  +     +  RG  G        
Sbjct: 784 LSPERIAELGAAEEFVLTVAQDGLGKRSSAYDYRVMGRGNQGVAAHDMSK 833



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVK-VTGDHVAVVGE 666
           +   +L V+  G        +     R   G     +S  +++      + GD V  V +
Sbjct: 795 AEEFVLTVAQDGLGKRSSAYDYRVMGRGNQGVAAHDMSKVKELAACFPVIDGDTVMAVTD 854

Query: 667 NRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG-ISDVICFKICEGL 709
             +L+ F +D +   +R  KGVRL    +G  +  V+     E  
Sbjct: 855 GGQLIRFPVDTVRIAARATKGVRLIRLAEGEKVVSVVRIAESEDD 899


>gi|261253832|ref|ZP_05946405.1| topoisomerase IV subunit A [Vibrio orientalis CIP 102891]
 gi|260937223|gb|EEX93212.1| topoisomerase IV subunit A [Vibrio orientalis CIP 102891]
          Length = 758

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 272/754 (36%), Positives = 448/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+ +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   SSEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +AA+ LID+P+  +  ++ ++ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVADAAIHLIDHPKAELPDVMNFVQGPDYPTEAEIISPKADLEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSVKMRAVWHKE-----GSDIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLLIAYLN+DE+I IIR ED PK V+++RF +TE
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLIAYLNLDEVIEIIRTEDDPKAVLMARFGITE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEKLLGSERRMNTLLKKEIQADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGD-----DRRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +  + + L  DG++Y+L + ++ S R  GE I   +++N    I   
Sbjct: 531 KSGDKYLAHARGKSNQQAVFLGNDGRSYSLESHSMPSARSQGEPITGRLNINAGTSIRHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     L+ S  G  F+ + S++++  + GK  + + +  ++     ++    D + 
Sbjct: 591 VMGEEEQLWLIGSDAGYGFVCKGSDLLSKNKSGKALVTLPANSEVISPQTISNLDTDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++ +GKG ++ +      K+          + +G +  + +  
Sbjct: 651 TITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKEREEYVSHLISLPQGSSVTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R      +DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKASDLENFRGERGRRGGLLPRGLQRVTRI 744


>gi|84516181|ref|ZP_01003541.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53]
 gi|84509877|gb|EAQ06334.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53]
          Length = 908

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 254/831 (30%), Positives = 400/831 (48%), Gaps = 106/831 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V++   L+  YL YA+S I  RAIPDLRDG KPVHRRI++ M E G     +++KSAR 
Sbjct: 25  SVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYGMYEAGNTHDKSYRKSARS 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD AAA RYTE RM +
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDRAAAMRYTEVRMDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 PAAYMLMDIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALIDNP+++ E+++E+I  PDFPTGG ++  R    ++Y  GRG   VRA+  V
Sbjct: 205 VIDATLALIDNPDLTSEEMIEFIPAPDFPTGG-LILGRSGARKAYLEGRGSVIVRAKTVV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV KS +I++IAE    KRI  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRYAIVINEIPYQVNKSVMIDRIAEAARDKRIEGIAHVQDESDRNGVRVVVELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ G  P+ + L   L  ++  R EV+ RR++F
Sbjct: 324 DATAEVVLNQLFRFTPMQTYFGCNMLALN-GGKPEQLTLRAFLVAFVDFREEVIARRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------------------- 412
            ++    R  IL GL +A  NIDE++A IR                              
Sbjct: 383 ELRKARERAHILCGLAVAVTNIDEVVATIRGSADAADARHTLMTRRWPAAAILEYIKLID 442

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL  L  +  +   +L S  
Sbjct: 443 DPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLEILGSRD 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ EV++ F+       RRT   + S        + +IE+E + V +++ G+
Sbjct: 503 RILQIIRDELTEVRDQFAVP-----RRTQIVDWSGDMD---DEDLIEQEDMVVTVTSGGY 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     LS++  KE D +     A+T  ++L  +TDG AY L    L 
Sbjct: 555 IKRTALADFRAQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLP 614

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
             S    G+AI  ++ +     +      D         +++  +S G+      S+   
Sbjct: 615 LGSRTAKGKAIVNILPIPQGVSVAAIMPVDRPEAEWDDLQIVFATSAGDVRRNALSDFTN 674

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRL 689
               GK  +K+  E  + +  ++    D V ++ ++ + + F    +     R   GVR 
Sbjct: 675 VKSNGKIAMKLPDEHTLLVNARICSPDDDVMLITDSGRAIRFPTTDVRVFKGRDSTGVRG 734

Query: 690 QSYKDGGISDVICFK--------------------------------------------- 704
              +       +                                                
Sbjct: 735 IRLQGDDKVVSMSIIRHFEAEAEERAAYLKMRRAMAGLADDAEVEDEEAAPGQISPERYA 794

Query: 705 --ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    +  + +   +  +     +  RGG+G        R G  ++S
Sbjct: 795 AMSAAENLILTISAKGSGKLSSSHDYPVRGRGGMGVAAMDKAMRGGPLVTS 845



 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L +S+KG+  +    +     R G     +        +     V   D + +V 
Sbjct: 799 AENLILTISAKGSGKLSSSHDYPVRGRGGMGVAAMDKAMRGGPLVTSFPVEMSDQIMLVT 858

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
              + +   ++ I   SR   GV++     G     + +   +G  
Sbjct: 859 STGQSIRVPVEGISFRSRSAGGVKVFDTGKGETVVSVAWIADQGDD 904


>gi|56420285|ref|YP_147603.1| DNA topoisomerase IV subunit A [Geobacillus kaustophilus HTA426]
 gi|56380127|dbj|BAD76035.1| DNA topoisomerase IV subunit A [Geobacillus kaustophilus HTA426]
          Length = 814

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 218/757 (28%), Positives = 390/757 (51%), Gaps = 24/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F
Sbjct: 1   MAERLLEMPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYIDGNTADKPF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  L+   GN G+IDGD  AA RYT
Sbjct: 61  RKAAKTVGNVIGNFHPHGDSSVYEAMVRMSQEWKLRNVLVEMHGNNGSIDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +D++ V F   +++   EP V P+ FPNLL NG++GI+ G AT IP
Sbjct: 121 EARLSAIAAELLRDIDKETVPFVPNFDDTTDEPTVLPAMFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H + E+ +A L  ID P+ ++++L+  + GPDFPTGG I++ ++ I ++Y  GRG   +
Sbjct: 181 PHALGEVIDAVLMRIDRPDCTVDELMTVLPGPDFPTGG-IIQGKDGIRKAYETGRGKIII 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E+   G   IV+TE+PY+V K+ L++KI EL + K++  + D+RDE+  +   +
Sbjct: 240 RAKAAIEQGKGGKKHIVITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++  ++  +D++  +     V    R P++M L  +L  ++AHR+EV+
Sbjct: 300 VIELKKDADAEAILNYLYKNTDLQVPYSF-NMVAIHERRPKLMSLPELLDAYIAHRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
             RS F ++  + R  I+ GL+ A   +DE+IA IR     +     +++ +  TE Q +
Sbjct: 359 TNRSHFELKKANERKHIVDGLIRALSILDEVIATIRASSDKRDAKERLMAHYGFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E + L     ++  +L   K+    I  E++ +K+ ++  
Sbjct: 419 AIVTLQLYRLTNTDITALRQEAEELDQAIAELTGILADEKKLLGVIKKELKTMKKQYADE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T  E    +     +A+I  E + V ++  G+++     S    +   +  K
Sbjct: 479 ------RRTVIEEEIEELKVKVEALIPAEDVIVTVTKEGYVKRTSYRSYSASNGQDMGMK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D L   L  +TTD +LL +  G     P   L   R       I  LI L  + ++V 
Sbjct: 533 ETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKEVGQHISHLIPLERDDELVA 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-D 659
           A     +++  +L+ V+ +G     E ++       +    + V  ++ +  V    G  
Sbjct: 593 AVPVSSFNTGEQLVFVTKQGLVKRTELAQYQVQRYTRPLVAVNVKEDDDVIAVYATDGCG 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVIC-FKICEGLTWIDSAGR 717
           H+ +   +   L+F+ ++I  +  R  GV+    K+G      C  ++ EG +++    R
Sbjct: 653 HLWLATHDGHALLFAEEEISLVGVRAAGVKGIQLKEGDFVAAACPVRLEEGSSFVVVTQR 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
              +           R   G ++ +    +  + + +
Sbjct: 713 GAVKKVAMSEFEPSSRAKRGVVIVREVKSNPHRVVGA 749


>gi|92114661|ref|YP_574589.1| DNA topoisomerase IV subunit A [Chromohalobacter salexigens DSM
           3043]
 gi|91797751|gb|ABE59890.1| DNA topoisomerase IV subunit A [Chromohalobacter salexigens DSM
           3043]
          Length = 750

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 280/758 (36%), Positives = 440/758 (58%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++    + E +V+ +SL+   E+ YL Y++  I +RA+P + DG KPV RRI++AM E+ 
Sbjct: 1   MTMDIHVEEGDVERLSLKEYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELS 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G+ D   
Sbjct: 61  LTASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWTPNFDGTLDEPAVLPARLPHVLLNGATGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+ +A   L+ +P+ ++  L+ Y+  PDFPT   I+     + + Y 
Sbjct: 181 VGMATDIPPHNVREVVDATCHLLRHPQATVSDLMAYVPAPDFPTEAEIISPSSDLAKLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++R R+ +EE       +VVT +PYQV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSVKLRGRYTLEEGN-----VVVTALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E    +N+NV+ +   P+VM L+ IL 
Sbjct: 296 STHETPTRLVIVPRSNRVDVEALMAHLFATTDLEKNVRVNLNVIGLDGRPRVMALNAILD 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR   R+  ++ R+ IL+GLL AYLNIDE+I IIR ED PK  ++  F 
Sbjct: 356 EWLRFRRATVRRRLEHRLGKVEDRLHILEGLLTAYLNIDEVIRIIREEDVPKTALIEAFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL LRLR L KLEE++I+ E D LLAE+E++  LL +     + I  E+R+ 
Sbjct: 416 LSERQAEAILELRLRHLAKLEEFKIRGEQDELLAERERLKELLGNDAALTDLIERELRQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +  +     RR    E   A   +  + +    PITVV+S +GWIRS K H +D + 
Sbjct: 476 ADGYGDA-----RRAPLVERGEAKALSEVELIGAD-PITVVLSEKGWIRSAKGHEIDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD   +A    +   ++LL   G++YTL A NL S R  GE I   I+      +
Sbjct: 530 LSYKAGDRFHLAARGKSNQPLVLLDDAGRSYTLTAHNLPSARSQGEPITGRINPGAGARM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDH- 660
           V   +     + L+ S  G  FI    ++I  ++ GK  L V     +   V V  G+  
Sbjct: 590 VGVMLDVPEARYLLASDGGYGFIARLDDLIGKSKAGKAALSVPKGCNVLPPVAVPEGEDT 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +AVV    +LL+F ++Q+P M++GKG ++          ++  + D+           +
Sbjct: 650 RIAVVSNEGRLLVFPLEQLPVMAKGKGNKMIDIPGARAANREEFVRDL-AMLPAGASLVV 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R    S  DL  ++G+RG  GS + +GF +  + 
Sbjct: 709 HAGKRKQTLSSRDLDYYVGERGRRGSKLSRGFQKVDRL 746


>gi|149191297|ref|ZP_01869552.1| DNA topoisomerase IV subunit A [Vibrio shilonii AK1]
 gi|148834895|gb|EDL51877.1| DNA topoisomerase IV subunit A [Vibrio shilonii AK1]
          Length = 758

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 278/754 (36%), Positives = 452/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEMSFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGEIGQGTVEWQPNFDGTMKEPKILPARLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNP+  + ++++++ GPD+PT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKADLPQVMDFVKGPDYPTEAEIISPSADLEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSVKMRAVWHKE-----GSDIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE + +R  +R+  I  R+ IL+GLL+AYLN+DE+I IIR ED+PK V++ RF +T+
Sbjct: 357 QFRRETVRKRLQYRLDKILARLHILEGLLVAYLNLDEVIEIIRTEDEPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E + L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQEELEKEREKLEKLLGSERRMNTLLKKEIQADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD S+L++
Sbjct: 477 YGD-----DRRSPIVERAEA-KAMTERDLVPSEPITVVLSEKGWIRHAKGHDVDASSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD    +    +    + L +DG++Y+L + +L S R  GE I   +++N   +I   
Sbjct: 531 KAGDKYLASARGKSNQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNINAGTNIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + + +   LV S  G  F+ + S++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEESQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPQGAEVITPSMIGDLESDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++ +GKG ++ +    K     + +     + +G T  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPSAKAKAREEFVSHLMALPQGATITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKPADLENFRGERGRRGGLLPRGLQRVTRI 744


>gi|27364065|ref|NP_759593.1| DNA topoisomerase IV subunit A [Vibrio vulnificus CMCP6]
 gi|320157448|ref|YP_004189827.1| topoisomerase IV subunit A [Vibrio vulnificus MO6-24/O]
 gi|27360183|gb|AAO09120.1| DNA topoisomerase IV, A subunit [Vibrio vulnificus CMCP6]
 gi|319932760|gb|ADV87624.1| topoisomerase IV subunit A [Vibrio vulnificus MO6-24/O]
          Length = 761

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 283/755 (37%), Positives = 443/755 (58%), Gaps = 25/755 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ A+++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFADVLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPAAPLMDLMQYVKGPDFPTEAEIITPSSDLEKMYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDQLMNHLFASTDLEKSYRVNLNMIGLDNRPQVKGLVQILTEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +T+
Sbjct: 357 TFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++    +  EIR   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKEIRADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+       A   T +  M   E ITVV+S +GWIR  K H VD   L +
Sbjct: 477 FGD-----DRRSPLVVREEAKALTERDLM-PNEAITVVLSEKGWIRHAKGHEVDCQGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GDS        +  + +LL +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDSYLAHACGKSNQQAVLLGSDGRSYSLESHTLPSARGQGEPITGRLNITPGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVA 662
            + +     L+ S  G  F+ + S++++  R GK  + +    ++     V+ +  D + 
Sbjct: 591 IMGEEEQLWLIGSDAGYGFVCKGSDLLSKNRSGKALVSLPENAEVMTPSAVLDLDNDDIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F I  +P++ +GKG ++ +        K+  +S +I       LT + + 
Sbjct: 651 AITNQGRMLMFPIKDLPQLGKGKGNKIINIPAAKAKAKEEILSHLIALPKGASLT-LYAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 710 KRKLGLKPADLDNFRGERGRRGGLLPRGLQRVTRI 744


>gi|37678773|ref|NP_933382.1| DNA topoisomerase IV subunit A [Vibrio vulnificus YJ016]
 gi|37197514|dbj|BAC93353.1| topoisomerase IV, subunit A [Vibrio vulnificus YJ016]
          Length = 761

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 283/755 (37%), Positives = 443/755 (58%), Gaps = 25/755 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ A+++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFADVLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPAAPLMDLMQYVKGPDFPTEAEIITPSSDLEKMYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDQLMNHLFASTDLEKSYRVNLNMIGLDNRPQVKGLVQILTEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +T+
Sbjct: 357 TFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++    +  EIR   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKEIRADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+       A   T +  M   E ITVV+S +GWIR  K H VD   L +
Sbjct: 477 FGD-----DRRSPLVVREEAKALTERDLM-PNEAITVVLSEKGWIRHAKGHEVDCQGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GDS        +  + +LL +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDSYLAHACGKSNQQAVLLGSDGRSYSLESHTLPSARGQGEPITGRLNITPGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVA 662
            + +     L+ S  G  F+ + S++++  R GK  + +    ++     V+ +  D + 
Sbjct: 591 IMGEEEQLWLIGSDAGYGFVCKGSDLLSKNRSGKALVSLPENAEVMTPSAVLDLDNDDIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F I  +P++ +GKG ++ +        K+  +S +I       LT + + 
Sbjct: 651 AITNQGRMLMFPIKDLPQLGKGKGNKIINIPAAKAKAKEEILSHLIALPKGASLT-LYAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 710 KRKLGLKPADLDNFRGERGRRGGLLPRGLQRVTRI 744


>gi|297570619|ref|YP_003696393.1| DNA gyrase subunit alpha [Arcanobacterium haemolyticum DSM 20595]
 gi|296930966|gb|ADH91774.1| DNA gyrase, A subunit [Arcanobacterium haemolyticum DSM 20595]
          Length = 854

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 235/779 (30%), Positives = 383/779 (49%), Gaps = 43/779 (5%)

Query: 6   ISNSNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++          +K V L+  +E  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + 
Sbjct: 1   MAEEMIQYNHGLIKDVDLQREMETSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYAMWDG 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G    ++F KS +IVG+V+G  HPHGD ++YD++VRL QP+  RYPL++GQGNFG     
Sbjct: 61  GYRPDSSFSKSVKIVGDVMGNFHPHGDAAIYDTMVRLVQPWNMRYPLVAGQGNFGTAGDL 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEARM Q+A  +++ ++E+ VDF   ++    EP V  ++FPNLL NG+ GIA
Sbjct: 121 GAAAPRYTEARMAQLAVEMVRDINEETVDFVPNFDGSVQEPTVLTARFPNLLVNGSEGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIV 240
           VGMAT IP HN++E+       +DNPE + E+LL+     + GPDFPTG  I+   + I 
Sbjct: 181 VGMATRIPPHNLREVAAGVQWFLDNPEATREELLDALLERVKGPDFPTGATIL-GTKGIE 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
             YR G G    RA   V+E+  G  C+VVT++P+QV   RL++K+ E I   R+P + D
Sbjct: 240 SMYRTGNGSITQRAIVEVDEIN-GRQCLVVTDLPFQVNPDRLLDKMVEGIKDGRLPGIAD 298

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           IRDES+    + ++    +     +++ +++  + M+  FP NM  L    VP+ + LDG
Sbjct: 299 IRDESSGRAGQRIVIVLKKDAVAKVVLNNLYKHTQMQNNFPANMLALVD-GVPRTLSLDG 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ++ W+ H+ EV+ RR+ FR++ +  R+ IL+GL+ A   +DE+IA+IR           
Sbjct: 358 FVRHWVNHQIEVIRRRTEFRLRKVLERLMILEGLVKALDALDEVIALIRRSPTVDEAREG 417

Query: 420 RF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 + E Q D IL ++LR L  LE  +I  E D  LA ++    +L   ++Q   ++
Sbjct: 418 LMKLLDINEIQADHILAMQLRRLAALERQKILDERDEKLALRDDYQDILAKPERQRTIVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ ++   F        RRT              + +I ++ + V I+  G+++  K  
Sbjct: 478 DEVGDIVAKFGD-----DRRTKILPFDGE---VSDEDLIPEDDVVVTITRSGFVKRTKVS 529

Query: 537 SV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
                      +     ++ D ++      T D  L  +  G+ Y +    L  G    +
Sbjct: 530 EYRAQHRGGKGIKGTTLRDDDIVEHFEVTSTHDWQLFFTNMGRVYRIKGYELPEGARDAK 589

Query: 589 --AIQLLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              I  L+    ++ I   V+   YD    L++ +  G       ++  +    G   +K
Sbjct: 590 GQHIANLLAFQPDERIASMVSIRSYDQADYLVLATEDGLVKKTRLADYDSARTGGLIAVK 649

Query: 644 VSSE-----EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKD 694
           +        +++     +  G  V +V    + L F+ D   +  M R   GV    ++ 
Sbjct: 650 LREREDGTMDRLVSARLLDDGADVLLVSRGGQSLRFTADDATLRPMGRATSGVTGMKFRG 709

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +   + EG          Y +  +     +  R G+G  V       G  + +
Sbjct: 710 DDRLLAMDV-VDEGAEVFVVTEGGYAKRTDIEQYRVQGRAGLGIKVANVVEARGDLVGA 767



 Score = 67.5 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 5/131 (3%)

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--- 638
              G   +    +    +  ++   V D   ++ VV+  G A   +  +     R G   
Sbjct: 693 RPMGRATSGVTGMKFRGDDRLLAMDVVDEGAEVFVVTEGGYAKRTDIEQYRVQGRAGLGI 752

Query: 639 KTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           K    V +   +   +    GD V V+ E+ K++  ++D++    R  +GV+  +   G 
Sbjct: 753 KVANVVEARGDLVGALITHPGDEVMVIMESGKVVRSAVDEVSLTGRNTQGVKFATPDKGD 812

Query: 697 ISDVICFKICE 707
               I   + +
Sbjct: 813 KIISIALNLEK 823


>gi|145634902|ref|ZP_01790609.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittAA]
 gi|145267768|gb|EDK07765.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittAA]
          Length = 747

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 274/749 (36%), Positives = 434/749 (57%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR ED PK  +++RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRQEDDPKAELMARFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 TSP-----RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 651 TSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRAERGRKGSTLPRGLHTN 739


>gi|84394565|ref|ZP_00993270.1| DNA topoisomerase IV subunit A [Vibrio splendidus 12B01]
 gi|84374815|gb|EAP91757.1| DNA topoisomerase IV subunit A [Vibrio splendidus 12B01]
          Length = 752

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 281/757 (37%), Positives = 456/757 (60%), Gaps = 25/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN  T   + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSNEITY--DGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 59  LSAASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 118

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIA
Sbjct: 119 SFAAMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIA 178

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  AA+ LID P+  +  ++ +I GPD+PT   I+  +  I + YR
Sbjct: 179 VGMATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYR 238

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDE
Sbjct: 239 TGRGSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDE 293

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  ILK
Sbjct: 294 SDHENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILK 353

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  RR  + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIR ED+P PV+++RF+
Sbjct: 354 EWIEFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPVLMNRFN 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL+++LR+L KLEE++I++E + L AE+EK++ LL S ++    I  EI+  
Sbjct: 414 ISEIQANAILDIKLRNLAKLEEFKIRAEQEELEAEREKLEKLLGSERRLNTLIKKEIQAD 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   
Sbjct: 474 ADKYGD-----DRRSPLIERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEG 527

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD    +    +  + + L +DG++Y+L + +L S R  GE I   ++++    I
Sbjct: 528 LNYKSGDKFLASTKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNVSPGTSI 587

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + ++    LV S  G  F+ + S++++  + GK  + +    ++ L   +     +
Sbjct: 588 RQVVMGENEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSN 647

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-ID 713
            +  +    ++L+F I  +P++S+GKG ++ +      K+          I E  T  I 
Sbjct: 648 QILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPSAKAKEREEFVSHLMAIPENATLTIY 707

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 708 AGKRKLGLKPADLENFRGERGRRGGLLPRGLQRVTRI 744


>gi|254475888|ref|ZP_05089274.1| DNA gyrase, A subunit [Ruegeria sp. R11]
 gi|214030131|gb|EEB70966.1| DNA gyrase, A subunit [Ruegeria sp. R11]
          Length = 913

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 261/848 (30%), Positives = 410/848 (48%), Gaps = 108/848 (12%)

Query: 4   DNISNSNTLVEENVKA-VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +N+  +     +     VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM 
Sbjct: 9   ENMDENKPERPQYDGPTVSIETEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMH 68

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+G      ++KSAR VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++D
Sbjct: 69  EVGNSHDKPYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMD 128

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTE RM + A  IL  +++D VDF+D Y+ +D EP V P++FPN+L NG  G
Sbjct: 129 GDNPAAMRYTEVRMDKPAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGG 188

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A LALI++P+++ E+L+EYI GPDFPTGG ++  R    ++
Sbjct: 189 IAVGMATNIPPHNLGEVVDATLALIEDPDLTSEQLIEYIPGPDFPTGG-VMLGRSGARKA 247

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +RA+  VEE+ +  + IVV EIPYQV K+ +IEKIAE +  KRI  +  ++
Sbjct: 248 YLEGRGSVIIRAKTKVEEIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKRIEGVAHVQ 307

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   V+    R   P++++  ++  S M+T F  NM  L+ G  P+ + L   L 
Sbjct: 308 DESDRNGVRVVVELKRDATPEVVLNQLYRFSPMQTSFGCNMLALN-GGRPEQLTLRRFLS 366

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--- 419
            ++  R +V+ RR+++ ++    R  IL GL +A  N+DE++A IR              
Sbjct: 367 SFIDFREDVVARRTAYDLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMT 426

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      ++L+E Q  AIL LRL+ L ++   ++  EL+ 
Sbjct: 427 RRWPASDIAPYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEE 486

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  + ++   +L+S ++    I+ E+REV++ F+       RRT   + S   +    + 
Sbjct: 487 LAGKIKEYLEILSSRERILGIISDELREVRDNFAVP-----RRTEIVDWSGDME---DED 538

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +IE+E + V I++ G+I+          K     LS +  KE D +     A+T  ++L 
Sbjct: 539 LIEREDMVVTITSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLF 598

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVV 617
            +TDG  Y L    L        G+AI  ++ +     I      D         +++  
Sbjct: 599 FTTDGMVYKLKTWRLPQGGRTSKGKAIVNILPIPTGVSIAAIMPVDVPDEDWEKLQVIFA 658

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFS 674
           +S G+      S+     R GK  +K+  +  +KLV   +    D V +  ++ + + F 
Sbjct: 659 TSAGDVRRNRLSDFTNVRRNGKIAMKLPEDGSVKLVNARICSEDDDVMLFTDSGRAIRFR 718

Query: 675 IDQIPEM-SR-GKGVRLQSYKDGGISDVICFK---------------------------- 704
              +    SR   GVR            +                               
Sbjct: 719 TTDVRVFNSRESTGVRGIRLNGDDHVVSMSVIRHFEASPEERAAYLKMRRAVAGIADDGE 778

Query: 705 -------------------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                                     +        +  +     +  RGG+G        
Sbjct: 779 SDDEDVVAGAISQDRYAEMSAAENLILTITSGGSGKLSSSHDYPVRGRGGMGVTAMDKAM 838

Query: 746 RSGKFLSS 753
           R G  ++S
Sbjct: 839 RGGAIVAS 846



 Score = 39.8 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 2/166 (1%)

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R    +   +           +E    +   R           D   +        + A 
Sbjct: 737 RLNGDDHVVSMSVIRHFEASPEERAAYLKMRRAVAGIADDGESDDEDVVAGAISQDRYAE 796

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            +   + IL +++ G      + +       G  +  +        IV +F  +   +++
Sbjct: 797 MSAAENLILTITSGGSGKLSSSHDYPVRGRGGMGVTAMDKAMRGGAIVASFPVEMDDQIM 856

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           + +SKG +  V    I   +R   G         E++  V  +   
Sbjct: 857 LATSKGQSIRVPIDGISFRSRSAGGVRVFNTGKGEEVVSVAWIAEQ 902



 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L ++S G+  +    +     R G     +        +     V   D + +  
Sbjct: 800 AENLILTITSGGSGKLSSSHDYPVRGRGGMGVTAMDKAMRGGAIVASFPVEMDDQIMLAT 859

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
              + +   ID I   SR   GVR+ +   G     + +   +   
Sbjct: 860 SKGQSIRVPIDGISFRSRSAGGVRVFNTGKGEEVVSVAWIAEQSDE 905


>gi|54020243|ref|YP_116054.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232]
 gi|53987416|gb|AAV27617.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232]
 gi|144227680|gb|AAZ44615.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae J]
          Length = 853

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 236/755 (31%), Positives = 397/755 (52%), Gaps = 24/755 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ M+E+G+  G ++
Sbjct: 42  ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 101

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYT
Sbjct: 102 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 161

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++G+ ++ VDFR  Y+  + EP V P+KFPNLL +G SGIAVGM T IP
Sbjct: 162 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 221

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI  + +    NP+I I +L+  + GPDFPTG  I   ++ I ++Y  G+G F +
Sbjct: 222 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIY-GKKGINQAYLTGKGSFII 280

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+  EIPY+V+K  +IEK+A L+  K+I  ++D+RDES+     V
Sbjct: 281 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 340

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   +   P++++  ++  +D++  + +NM  L    VP++M L  I   +L H++E+ 
Sbjct: 341 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALV-NGVPKLMNLAQIFNYYLEHQKEIN 399

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            R  +F ++    ++ +L+G+ +A  NIDE+I II++       +  +   ++L   Q  
Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNSGQTK 459

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L  L   ++ +E++ L  E  +I S+++S K+  + I  + + V   F   
Sbjct: 460 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDP 519

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALHF 545
               RR     E+   D+  L           +   V        R      +   A + 
Sbjct: 520 ----RRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMVLDEYRLQNRGGIGTLASNH 575

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
            + D LK     +T   +L++S+  K + L A  +  G   G+   I  LI L  N+ I 
Sbjct: 576 YKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIKLEKNESIS 635

Query: 604 TAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
               ++       L+ VS+ GN      S     T+ GK  LK+   + +        + 
Sbjct: 636 NLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLVENDYLVSAFIAPNNP 695

Query: 660 --HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             ++ +      +  +SI  + +  R   GV+    ++G      CF   +       + 
Sbjct: 696 DLNILIGSSQGFVNRWSIKLLRDSGRTAIGVKGIKLEEGHKIIGACFAF-DNHFIFSLSK 754

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + + +        L  R   G +      ++G  +
Sbjct: 755 KGFGKKTQVGEYRLTGRTTKGLMSLDA-KKAGNLV 788



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMK 651
           I L     I+ A        +  +S KG     +  E     R  K  + + +++   + 
Sbjct: 729 IKLEEGHKIIGACFAFDNHFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKKAGNLV 788

Query: 652 LVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +  +  +  A++  +    +   +D +P +SR  KGV++ + K G     +  
Sbjct: 789 FISAIKNNEEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSL 842



 Score = 42.1 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 45/125 (36%), Gaps = 3/125 (2%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           + +  +  +EG  +  A  A     I  LS  G       G         + +   +D  
Sbjct: 724 IGVKGIKLEEGHKIIGACFAFDNHFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMS-LDAK 782

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVK 655
              ++V      +  + ++ + KG A  ++     II+   KG   + +   +++  V  
Sbjct: 783 KAGNLVFISAIKNNEEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSL 842

Query: 656 VTGDH 660
           ++ + 
Sbjct: 843 ISKNE 847


>gi|255262702|ref|ZP_05342044.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62]
 gi|255105037|gb|EET47711.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62]
          Length = 923

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 262/856 (30%), Positives = 404/856 (47%), Gaps = 118/856 (13%)

Query: 6   ISNSNTLVEENVKA---------VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           +S++    E++            +S+   ++  YL YA+S I  RAIPDLRDG KPVHRR
Sbjct: 1   MSDTPDTPEDDNAPAPYVYDGPQISITDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM E G     +++KSAR VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQG
Sbjct: 61  ILYAMYETGNSHDKSYRKSARPVGDVMGKYHPHGDGAIYDALVRMAQDFSMSLPLLDGQG 120

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGD+AAA RYTE RM + A  +L  +++D VDF+D Y+ +D EP V PS+FPN+L
Sbjct: 121 NFGSMDGDNAAAMRYTEVRMDKPAAFVLADIEKDTVDFQDNYDGKDREPTVLPSRFPNML 180

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG  GIAVGMAT+IP HN+ E+ +A LALID+P++S E L+EY+ GPDFPTGGI++  R
Sbjct: 181 VNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLSSEDLIEYVPGPDFPTGGIML-GR 239

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
               ++Y  GRG   VRA+  VEE+ +  + I++ EIPYQV K+ +IEKIAE +  K+I 
Sbjct: 240 SGARKAYLEGRGSVIVRAKTRVEEIRKDRFAIILDEIPYQVNKATMIEKIAEQVREKKIE 299

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            +  ++DES  +   V+    R    ++++  +F  + M+T F  NM  L+ G  P+ + 
Sbjct: 300 GISHVQDESDRNGVRVVVELKRDATAEVVLNQLFRFTPMQTYFGCNMLALN-GGRPEQLT 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---- 412
           L   L  ++  R EV+ RR++F ++    R  IL GL +A  NIDEI+A IR+       
Sbjct: 359 LRRFLTSFVDFREEVVARRTAFELRKARERSHILCGLAVAVTNIDEIVATIRSSADAAEA 418

Query: 413 -------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                            ++L+E Q  AIL LRL+ L ++   ++
Sbjct: 419 REKLMTRRWPAESILEYIELIDDPTHTANDDGTYNLSETQARAILELRLQRLTQIGVKEV 478

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             EL  L  +      +L S ++    I  E+ EV++ F+       RRT   + S    
Sbjct: 479 TDELQELAGKIRDYLEILGSRERIMQIIRDELHEVRDQFAVP-----RRTAIVDWSGDMD 533

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +IE+E + V +++ G+I+          +     +  +  KE D +     A+T
Sbjct: 534 ---DEDLIEREDMVVTVTSGGYIKRTPLADFRAQRRGGKGVGGMQTKEEDVVTTLFVANT 590

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---- 613
             ++L  +TDG AY L    L        G+AI  ++ +     +      D   K    
Sbjct: 591 HTQLLFFTTDGMAYKLKTWRLPQGSRTSKGKAIVNILPMPVGASVAAILPIDRDEKDWAD 650

Query: 614 --LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKV-TGDHVAVVGEN 667
             +   +S G       S+       GK  +K   E    K+  V      D V +V  +
Sbjct: 651 LQVTFATSAGTVRRNALSDFTNVKSNGKIAMKFEGEHAETKLINVRITAPDDDVMLVTNS 710

Query: 668 RKLLIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVICFK--------------------- 704
            + + F  + +    SR   GVR            +                        
Sbjct: 711 GRAIRFRANDVRVFNSRASTGVRGIKLNGDDTVVSMSVIRHFEADPAERAAYLKMRRAMA 770

Query: 705 ---------------------------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
                                             +    +   +  +     L  RGG+G
Sbjct: 771 GLADDAEVDDDDAVEAGQLSQERYAEMSAAENLILTITAQGAGKLSSSHDYPLRGRGGMG 830

Query: 738 SLVPKGFPRSGKFLSS 753
                   R G+ ++S
Sbjct: 831 VTAMDKAMRGGEIVTS 846



 Score = 45.5 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 7/100 (7%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L ++++G   +    +     R G     +       ++     V   D + +V 
Sbjct: 800 AENLILTITAQGAGKLSSSHDYPLRGRGGMGVTAMDKAMRGGEIVTSFPVDIHDQIMLVT 859

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              + +   ++ I   SR   GV++  +  G    V+   
Sbjct: 860 NQGQSIRVPVEGISFRSRSAGGVKV--FDTGKNEMVMSVA 897


>gi|218708461|ref|YP_002416082.1| DNA topoisomerase IV subunit A [Vibrio splendidus LGP32]
 gi|116248624|gb|ABJ90451.1| gyrase A subunit [Vibrio splendidus]
 gi|218321480|emb|CAV17432.1| Topoisomerase IV subunit A [Vibrio splendidus LGP32]
          Length = 752

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 282/757 (37%), Positives = 456/757 (60%), Gaps = 25/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN  T   + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSNEITY--DGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 59  LSAASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 118

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIA
Sbjct: 119 SFAAMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIA 178

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  AA+ LID P+  +  ++ +I GPD+PT   I+  +  I + YR
Sbjct: 179 VGMATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYR 238

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDE
Sbjct: 239 TGRGSIKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDE 293

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  ILK
Sbjct: 294 SDHENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILK 353

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  RR  + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIR ED+P PV++SRF+
Sbjct: 354 EWIEFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPVLMSRFN 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL+++LR+L KLEE++I++E + L AE+EK++ LL S ++    I  EI+  
Sbjct: 414 ISEIQANAILDIKLRNLAKLEEFKIRAEQEELEAEREKLEKLLGSERRLNTLIKKEIQAD 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   
Sbjct: 474 ADKYGD-----DRRSPLIERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEG 527

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD    +    +  + + L +DG++Y+L + +L S R  GE I   ++++    I
Sbjct: 528 LNYKSGDKFLASAKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNVSPGTSI 587

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + ++    LV S  G  F+ + S++++  + GK  + +    ++ L   +     +
Sbjct: 588 RQVVMGENEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSN 647

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-ID 713
            +  +    ++L+F I  +P++S+GKG ++ +      K+          I E  T  I 
Sbjct: 648 QILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPSAKAKEREEFVSHLMAIPENATLTIY 707

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 708 AGKRKLGLKPADLENFRGERGRRGGLLPRGLQRVTRI 744


>gi|219870634|ref|YP_002475009.1| DNA topoisomerase IV subunit A [Haemophilus parasuis SH0165]
 gi|219690838|gb|ACL32061.1| DNA topoisomerase IV subunit A [Haemophilus parasuis SH0165]
          Length = 735

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 269/733 (36%), Positives = 432/733 (58%), Gaps = 23/733 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KKSAR V
Sbjct: 1   MPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKKSARTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+V+GK HPHGD++ Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE+++++
Sbjct: 61  GDVLGKFHPHGDRACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSK 120

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGMAT IP HN+ E
Sbjct: 121 MAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTTGIAVGMATDIPPHNINE 180

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A++ L+DNP  S+  +L+ + GPD+PT   I+  R  I + Y  GRG  ++RA W  
Sbjct: 181 LAAASVKLLDNPTASLSDILDVVQGPDYPTEAEIITPRSEIAKIYEHGRGSIKMRAVWKR 240

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPK 316
           EE       IV+  +P+Q   S++IE+IA  +  K++P+++DIRDES  +   RIVL P+
Sbjct: 241 EENN-----IVINALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRIVLEPR 295

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWLA RR  + RR 
Sbjct: 296 SNRIDYDGLMDHLFATTDLEKSYRINMNMIGLDGKPAVKNLLTILTEWLAFRRTTVTRRL 355

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           +FR+  I  R+ IL+GL+IA+LNIDE+I IIRNED PK  +++RF L++ Q +AILNLRL
Sbjct: 356 NFRLDKIISRLHILEGLMIAFLNIDEVIEIIRNEDNPKAELIARFQLSDEQAEAILNLRL 415

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L KLEE+++K+E   L  E+E +  +L S ++  N I  EI    + F+       RR
Sbjct: 416 RHLAKLEEHELKAEQQKLEEEREHLQGILGSERRLNNLIKKEIEADAKAFASP-----RR 470

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   E + A KA  +  +   EP+TV++S +GW+R  K H +D+  L +K GDS     +
Sbjct: 471 SPLVERAEA-KAISESDLTPTEPVTVILSEKGWVRCAKGHDIDVQNLSYKAGDSYLAHAY 529

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
             +   ++ + + G++Y L   +L S R  GE I   I L     +    + + + K+L+
Sbjct: 530 GKSNQPVVFIDSTGRSYALDPLSLPSARSQGEPITGKISLPDGATVQCVLMAEESRKVLM 589

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVV--GENRKLLIF 673
            S  G  FI +  ++++  + GK  + ++   K+     +  G+   +V      ++L+F
Sbjct: 590 ASDSGYGFICQFEDLVSRNKAGKAVISLTENAKVLPPQLLKEGEENLLVAMSNTGRVLVF 649

Query: 674 SIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            + ++PE+S+GKG ++ +           +   +            S  R       D+ 
Sbjct: 650 PVSELPELSKGKGNKIINISAQAAKERADLLSRLLIINPTSSLVFVSGKRKITLKPTDIE 709

Query: 728 GWLGKRGGVGSLV 740
            + G+R   G+ +
Sbjct: 710 HYRGERARKGTQL 722


>gi|315646516|ref|ZP_07899634.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453]
 gi|315278159|gb|EFU41479.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453]
          Length = 819

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 228/756 (30%), Positives = 394/756 (52%), Gaps = 28/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E      L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      +
Sbjct: 3   LSEQFLPAYLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+V+G  HPHGD S+Y+ +VR+AQP+   + L+ G GN+G+ D D AAA RYT
Sbjct: 63  RKSAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +++  V F+D ++    EPVV PS++PNLL NG SGI+ G AT IP
Sbjct: 123 EARLSSIAMELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+ +A +A++  PEI + +++ +I GPDFPT GII+   E I+++YR G+G   +
Sbjct: 183 PHNLREVIDACIAVMQKPEIELAEIMTFIKGPDFPTSGIIMGG-EGILDAYRTGKGRVYL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +E +  G   IV+TEIPYQV KSRL+  +  + + K++  + ++RDES  +   +
Sbjct: 242 RSKTDIESLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++  +   +D++  +  NM  +   + PQ + L  +L  ++ H+REV+
Sbjct: 302 VVELKKDADANGILAYLLKKTDLQITYNFNMVAIV-NKTPQQLGLKAMLTAYIEHQREVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F ++  + R  +L+GL+ A   +DE+IA I+        +  +   F  TE Q D
Sbjct: 361 TNRTQFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQAD 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           +IL L+L  L  LE + ++ ELD L  + E + ++L+S K+    I  E+ E++E +   
Sbjct: 421 SILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIAVIRKELLEIREKYGIE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-----DLSALH 544
                RR+   E          + ++  E + V +SN G+I+     S      +L +  
Sbjct: 481 -----RRSVIQEEVEEI-KVNLEVLVNAEDVLVTLSNEGYIKRTSMLSFTRSGGELGSSG 534

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDI 602
            K+GD +      +T + +L+ ++ G+ + LP   +   +      AI  +I +    +I
Sbjct: 535 VKDGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQIPEYKWKDAGTAIVNVIQVPKEDNI 594

Query: 603 VTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           V+        D    L+ VS KG     E  +            KV++++ +  VV   G
Sbjct: 595 VSVIPVSNFEDPGKSLVFVSRKGQVKRTELKDYATKRAGAVAAAKVAADDSIIQVVMSDG 654

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + ++ +    + F+  ++  M R   GVR    +DG       +   +    +    
Sbjct: 655 HKDIVLISKEGMSIRFNEQEVNAMGRVSGGVRGIQLRDGDEVVAALWVENDEGEILTITD 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFL 751
             Y +    L      RGG G      F  + GK +
Sbjct: 715 LGYGKRSLLLDYQAQSRGGKG---MATFEFKEGKRV 747


>gi|261855829|ref|YP_003263112.1| DNA topoisomerase IV, subunit alpha [Halothiobacillus neapolitanus
           c2]
 gi|261836298|gb|ACX96065.1| DNA topoisomerase IV, A subunit [Halothiobacillus neapolitanus c2]
          Length = 758

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 284/751 (37%), Positives = 438/751 (58%), Gaps = 19/751 (2%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            +  ++T   +  +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+
Sbjct: 17  GMGGNST---DGFERRSIAEFSEQAYLNYAMYVILDRALPSVCDGLKPVQRRIVYAMSEL 73

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG- 123
           GL   +  KKSAR VG+VIGK HPHGD + Y+++V +AQPF  RYPLI GQGNFG+ D  
Sbjct: 74  GLTAASKHKKSARTVGDVIGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNFGSPDDP 133

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
            S AA RYTE+R+T  A  +L   ++  VD++  ++    EP + P++ PN+L NG  GI
Sbjct: 134 KSFAAMRYTESRLTAYAHSLLAEAEQGTVDWQPNFDGTLEEPTLLPARLPNVLLNGGMGI 193

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVG++T IP HN++E+  A +AL+D PE +++ L  ++ GPDFPT   I+   + I++ Y
Sbjct: 194 AVGLSTDIPPHNLREVVAATIALLDEPESTVDDLCRHLRGPDFPTEAEIITPPDEIMQMY 253

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R G G  R RAR+ VE+       I++T +P+QV  S+++E+IA  + AK++PL+ D+RD
Sbjct: 254 RTGTGSVRQRARYEVEQGE-----IIITALPFQVSGSKILEQIAAQMNAKKLPLVTDLRD 308

Query: 304 ESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES  +   R+V+ P++R +D + LM  +F  +D+E  + +NMNV+++   P+VM L  +L
Sbjct: 309 ESDHEAPTRLVIIPRSRQVDAEALMAHLFATTDLEKSYRVNMNVIALDGRPRVMNLKDLL 368

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            EWL  RR+ L RR  +R+  ++ R+EIL GLLIA+LNIDE+IA+IR  D+PK  +++RF
Sbjct: 369 SEWLQFRRQTLTRRIQWRLAKVENRLEILAGLLIAFLNIDEVIAVIREADEPKAELIARF 428

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q +AIL +RLR L KLEE  IK E   L+AE E +  LL    +  N +  E+++
Sbjct: 429 DLTERQAEAILEIRLRQLAKLEEIAIKKEQGELMAESEILRGLLADESRLRNLLRDELQD 488

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + +  +     RR+       A +A  + A+I  EP+TVV+S  GWIR+ K H VD  
Sbjct: 489 DAQKYGDA-----RRSRLV-TRGAAQALAETALISSEPVTVVLSKNGWIRAAKGHDVDPV 542

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           AL +K GD   + ++  +T  ++LL   G+AYTL A +L S RG GE +   +       
Sbjct: 543 ALSYKAGDGYLVHMNGKSTQSVILLDDTGRAYTLAAHSLPSARGQGEPLTGRLSPPTGAQ 602

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--D 659
                + D    +L+  S G  FI    E+++  R GK  + +     +   +++     
Sbjct: 603 FNQMVMADDKDAVLLWQSGGYGFITPFEELLSRQRAGKVMVSLQDGATLGAPIRLDDQVQ 662

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            +A    +  +LI    +IP++S+G+G +L   K G      C  +      + S  RS 
Sbjct: 663 RIAFASSDGHVLILERAEIPQLSKGRGNKLMGLKSGFTLIAACALVEGEGLKVQSGARSV 722

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              + D   + G R   G ++P+GF R    
Sbjct: 723 TLRDVDFDNYGGARASRGRILPRGFQRVDAL 753


>gi|282896473|ref|ZP_06304493.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9]
 gi|281198579|gb|EFA73460.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9]
          Length = 838

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 242/790 (30%), Positives = 389/790 (49%), Gaps = 54/790 (6%)

Query: 6   ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++    L+    V   +L   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+
Sbjct: 1   MAEQLNLLNTGQVVPTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHEL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL     ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL+ G GNFG++D D
Sbjct: 61  GLTPDRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDND 120

Query: 125 SAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE R+  +    +L+ + E+ V+F   ++    EP V P++ P LL NG +GI
Sbjct: 121 PPAAMRYTETRLAPIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGCAGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ EI +  +ALID+P+++ EKLLE I GPDFPTGG IV     I E+Y
Sbjct: 181 AVGMATNIPPHNLGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIV-GSGGIKEAY 239

Query: 244 RLGRGGFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             G+GG  +R    +E++     GR    I+VTE+PYQV K+  IEK+A+L+   R+  +
Sbjct: 240 NTGKGGIILRGVVSLEDILSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLHGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES      V+    R  +P+ ++  ++  + ++T F   +  L     P+ + L 
Sbjct: 300 SDLRDESDRQGMRVVIELKRDANPEEVIGQLYQQTALQTTFGAILLALV-EGQPRQLSLR 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            +L+E+L  R + L RR S+ +   + R  I+ GLL A   +DE+I I+R         +
Sbjct: 359 QMLQEFLRFREDTLNRRYSYELGKAENRASIVAGLLKALSAVDEVITILRQSPDGSTAKM 418

Query: 419 SRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
                  LTE Q DAIL + LR L  LE+  ++ E   L  +   +  LL   ++    +
Sbjct: 419 VLCQQLELTETQADAILAMPLRRLTSLEQQNLQEEFHQLSDQITSLRRLLEDRRELLKSL 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI----------------EKEP 519
             ++R +K  +        RRT       A K                          EP
Sbjct: 479 KKDLRTLKRKYGD-----TRRTKLIPGQIAVKPDKVNNQPSSPGEKEKSKISPEEQPPEP 533

Query: 520 ITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
             +  + RG++R          +     + D L      +T   +L+L+T GK Y +  G
Sbjct: 534 AILEFTQRGYVRRLAPGSKKAKAETITGDNDFLIQTEITNTHQDLLILNTSGKVYPVKVG 593

Query: 579 NLLSGRGHGEAIQLLIDL------NHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEES 629
           ++            LI L       + + I+  F+      T  +++V+ +G    +   
Sbjct: 594 DISPISARSPRGMPLITLLTNTAQGNVEGILGRFILPETKDTHDMVIVTKQGRIKRLSLE 653

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ--IPEMSRGKG 686
           E+   +++G T LK+  ++++        +H + +     + L F+I+   +P M R   
Sbjct: 654 ELTNVSKRGITILKLKDDDQLCFAQLTNPNHNLILGSSGGRCLRFAINDDQLPVMGRAA- 712

Query: 687 VRLQSYKDGGISD----VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 +   I      + C  I +    +      Y +  +      G RG +G  + K
Sbjct: 713 ---MGLQSFRILKSQQIISCVTIEQEENLLLVTQEGYAKRISSGSLRAGNRGDLGIQMLK 769

Query: 743 GFPRSGKFLS 752
              ++   ++
Sbjct: 770 FHNKTDNLVA 779



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 13/205 (6%)

Query: 517 KEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                V+++ +G I+              ++ L  K+ D L  A   +    ++L S+ G
Sbjct: 634 DTHDMVIVTKQGRIKRLSLEELTNVSKRGITILKLKDDDQLCFAQLTNPNHNLILGSSGG 693

Query: 571 KAYTLPAGNLLSGRGHGEAIQ-LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           +       +         A+      +  +Q I++    +    LL+V+ +G A  +   
Sbjct: 694 RCLRFAINDDQLPVMGRAAMGLQSFRILKSQQIISCVTIEQEENLLLVTQEGYAKRISSG 753

Query: 630 EIIANTRK--GKTFLKV-SSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-G 684
            + A  R   G   LK  +  + +  + +      V +V    +++  S+  IP + R  
Sbjct: 754 SLRAGNRGDLGIQMLKFHNKTDNLVAITRTNTSQKVVLVTNKERMVKTSVQSIPILDRDA 813

Query: 685 KG-VRLQSYKDGGISDVICFKICEG 708
           +G       +D  I+ V+     E 
Sbjct: 814 RGENIFPMTRDEVITSVVVVLETES 838


>gi|86148732|ref|ZP_01067007.1| DNA topoisomerase IV subunit A [Vibrio sp. MED222]
 gi|85833481|gb|EAQ51664.1| DNA topoisomerase IV subunit A [Vibrio sp. MED222]
          Length = 752

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 282/757 (37%), Positives = 456/757 (60%), Gaps = 25/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN  T   + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSNEITY--DGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 59  LSAASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 118

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIA
Sbjct: 119 SFAAMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIA 178

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  AA+ LID P+  +  ++ +I GPD+PT   I+  +  I + YR
Sbjct: 179 VGMATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYR 238

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDE
Sbjct: 239 TGRGSIKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDE 293

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  ILK
Sbjct: 294 SDHENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILK 353

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  RR  + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIR ED+P PV++SRF+
Sbjct: 354 EWIEFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPVLMSRFN 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL+++LR+L KLEE++I++E + L AE+EK++ LL S ++    I  EI+  
Sbjct: 414 ISEIQANAILDIKLRNLAKLEEFKIRAEQEELEAEREKLEKLLGSERRLNTLIKKEIQAD 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   
Sbjct: 474 ADKYGD-----DRRSPLIERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEG 527

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD    +    +  + + L +DG++Y+L + +L S R  GE I   ++++    I
Sbjct: 528 LNYKSGDKFLASAKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNVSPGSSI 587

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + ++    LV S  G  F+ + S++++  + GK  + +    ++ L   +     +
Sbjct: 588 RQVVMGENEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSN 647

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-ID 713
            +  +    ++L+F I  +P++S+GKG ++ +      K+          I E  T  I 
Sbjct: 648 QILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPSAKAKEREEFVSHLMAIPENATLTIY 707

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 708 AGKRKLGLKPADLENFRGERGRRGGLLPRGLQRVTRI 744


>gi|113460743|ref|YP_718810.1| DNA topoisomerase IV subunit A [Haemophilus somnus 129PT]
 gi|112822786|gb|ABI24875.1| DNA topoisomerase IV subunit A [Haemophilus somnus 129PT]
          Length = 748

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 270/746 (36%), Positives = 440/746 (58%), Gaps = 22/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 3   TEINYEGIEQMPLRQFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAS 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 63  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  V+++  ++    EP   P++ P++L NGT+GIAVGMA
Sbjct: 123 MRYTESRLSKISEILLSELGQGTVNYQANFDGTLEEPQYLPARLPHILLNGTTGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+  A + L+DNP   +++L+  + GPDFPT   I+  +E I + Y  GRG
Sbjct: 183 TDIPPHNLNEVANATIMLLDNPNADLDQLMTALQGPDFPTEAEIISPKEEIRKIYEQGRG 242

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W      + +  I++T +P+Q   S+++ +IAE +  K++P++EDIRDE+  +
Sbjct: 243 SIKMRAVW-----KKENGEIIITALPHQSSPSKIVAQIAEQMQNKKLPMVEDIRDEADHE 297

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 298 NPIRLVIVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKNLVQILTEWLT 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR  +R+  +  R+ IL GLLIA+LNIDEII IIRNEDKPK ++++RF+LT+ 
Sbjct: 358 FRRQTVTRRLQYRLDKVLARLHILDGLLIAFLNIDEIIEIIRNEDKPKEILIARFNLTDE 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILNLRLR L KLEE ++++E +NL  E+  ++ +LNS  +  N I  EI++  + F
Sbjct: 418 QAEAILNLRLRHLAKLEEQELQAEKNNLAKERNSLEQILNSEIRLNNLIKKEIQQDAKTF 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E + A KA  +  M   EPIT+++S  GW+R  K H ++  AL +K
Sbjct: 478 ASP-----RLSPLVERAEA-KAISETDMTPSEPITIILSEMGWVRCAKGHDINARALSYK 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+        +   ++ + + G++YTL   +L S R  GE +   + L     I    
Sbjct: 532 TGDNYLTHACGKSNQPVVFIDSTGRSYTLDPLSLPSARSQGEPLTGKLTLPSGATIEHLL 591

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-- 664
           + +    LL+ S  G  FI +  ++++  + GK  + +     +   + +      +V  
Sbjct: 592 IENENQSLLMASDAGYGFICKFEDLVSRNKAGKAVISLPENANVLPPLVLQNSTALLVAL 651

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICEGLTWI-DSAGRS 718
               ++L+F +  +PE+S+GKG ++      + K+     V  F I E  + +  +  R 
Sbjct: 652 TSMNRMLVFPVADLPELSKGKGNKIIHIPAANAKERSELLVKLFLISEKTSLVFHAGKRK 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                 D+  +  +RG  GS +P+G 
Sbjct: 712 VTLKPEDIQKFRAERGRKGSPLPRGL 737


>gi|157692486|ref|YP_001486948.1| DNA topoisomerase IV subunit A [Bacillus pumilus SAFR-032]
 gi|157681244|gb|ABV62388.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Bacillus pumilus
           SAFR-032]
          Length = 812

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 213/748 (28%), Positives = 379/748 (50%), Gaps = 22/748 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+
Sbjct: 4   QERFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYAEGNTQDKNFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSAIASELLKDLDKETVEFVANFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  +  I+ P  ++E L+  I GPDFPTGG I++  + I ++Y  G+G   +R
Sbjct: 184 HHLGEVIDGVIKRIEQPHCTVEDLMTVIKGPDFPTGG-IIQGVDGIKKAYETGKGKIMIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E +  G   IV+TEIPY+V K+ L++K+ E  I +++  + ++RDE+      ++
Sbjct: 243 GKAEIETIRGGRQQIVITEIPYEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D + ++  ++  SD++  +     V    R P +M L  IL  ++AH++EV+ 
Sbjct: 303 VELKKEADANGVLNFLYKNSDLQIPYNF-NMVAIHNRRPTLMTLTTILDAYIAHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDA 430
            RS++ ++    R  I+ GL+ A   +DE+IA IR+ +  +     ++ ++  TE Q +A
Sbjct: 362 NRSAYELRKAKERHHIVDGLIKALSILDEVIATIRSSNDKRDAKNNLMEKYDFTEAQSEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +  Q++ E + L     +++ +L + K+    I   ++++K+ ++   
Sbjct: 422 IVSLQLYRLTNTDITQLRDEANELDVRIAELEDILGNEKKLLKVITNSLKKLKKTYADD- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R +  E    +     + MI  E + V ++  G+I+     S    +      K+
Sbjct: 481 -----RRSVIEEKIEEIKINLEVMIASEDVYVTVTKDGYIKRTSQRSYAASNGKDFGMKD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D L      +TTD +LL +  G     P   L   R       I  +I ++ ++ I  A
Sbjct: 536 TDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHITNIISIDRDESIQKA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DH 660
                +D T  LL  +  G     +  +  A    K    L +  ++++  V   TG   
Sbjct: 596 IPIKEFDETSYLLFFTKGGMVKKTKLLQYKAQRYSKPLVALNLKGDDELVDVHVTTGQQE 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +  +N   L F  +++  +  R  GV+  + KDG           +    + +  R  
Sbjct: 656 LFIATKNGYGLWFDEEEVSVVGPRAAGVKGINLKDGDEVVSGQIINPKNDVLVLTTQRGA 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            +  N        R   G L+ +   ++
Sbjct: 716 VKRMNLSEFDKTSRAKRGVLMLRELKKN 743


>gi|149184576|ref|ZP_01862894.1| DNA gyrase subunit A [Erythrobacter sp. SD-21]
 gi|148831896|gb|EDL50329.1| DNA gyrase subunit A [Erythrobacter sp. SD-21]
          Length = 946

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 244/845 (28%), Positives = 386/845 (45%), Gaps = 102/845 (12%)

Query: 1   MGVD-NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  D +  ++     E    + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI++
Sbjct: 1   MADDIDTIDTPVPGGEEHTRIDIVEEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           A +E G   G  F+KSA+IVG+V+G  HPHGD ++YD+L R+ Q +  R PLI GQGNFG
Sbjct: 61  ASNEGGFVAGRPFRKSAKIVGDVMGNYHPHGDAAIYDALARMTQNWSLRVPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++D D  A+ RYTEAR+ +VA  +L  +D+D VDF D Y+    EP V P++FPNLL NG
Sbjct: 121 SMDPDPPASMRYTEARLARVANSLLDDLDKDTVDFADNYDGSRREPTVLPARFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +   A +DNP I+ E+L E I GPDFPT   ++  +   
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDGCFAYMDNPAITNEELFEIIPGPDFPTAP-LILGKTGA 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y  GRG    RAR  +EE       IV+T IP+QV KS L+EKIAE    KRI  + 
Sbjct: 240 RAAYTTGRGSILQRARHEIEERRGDRKSIVLTSIPFQVGKSGLVEKIAEAAKDKRIEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES+     V+    R    ++++  I+  +  ++ FP    +   G  P+V+ L  
Sbjct: 300 DIRDESSRQGVRVVVDLKRDASAEVVLNQIWRYTPAQSSFPA-NMLAISGGRPEVLTLRE 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------ 413
            ++ ++  R EV+ RR+ + +     R  IL GL++A  N+DE++A+IR+   P      
Sbjct: 359 FIQAFITFREEVITRRTKYELNKARDRAHILLGLVVAVSNLDEVVAMIRSAPTPAEARAR 418

Query: 414 ------------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                                          + L+E QV AIL+LRL  L  L   +I  
Sbjct: 419 LLAKEWPIGDIAQYIALVEAIEPSDEQTGGTYRLSERQVKAILDLRLHRLTALGRDEIGD 478

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           EL  L    E+  S+L    + +  +  E+ E++  ++             E++ A    
Sbjct: 479 ELKLLSLSIEEYLSILADRVKLYGVMRGELEEIRAAYATPR--------VSEIAPAWDGI 530

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHS--------VDLSALHFKEGDSLKIALHAHTTD 561
             + +IE+E + V +++ G+I+     +           S +  K+ D++       T +
Sbjct: 531 DDEDLIEREEMVVTVTHGGYIKRTPLDTFRAQARGGKGRSGMATKDEDAVVELFVTSTHN 590

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------K 613
            +L  +  G+ Y +    L  G    +   +  L+ L  ++ +                 
Sbjct: 591 PVLFFTNTGRVYRMKVWKLPEGGPQTKGRPMVNLLPLGDDERVTNVLALPEDEAEWAKLN 650

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKVTGD-HVAVVGENRKL 670
           ++  + +G                GK  +     S +++  V  +T D  + +  ++ K 
Sbjct: 651 IVFATEQGMVRRNSMDAFTNVPSNGKYAMGFVEDSGDRLIGVELLTEDQEIFLASDSGKA 710

Query: 671 LIFSIDQIPEM-SR-GKGVRLQSYKDG-GISDVICFKICEGLT----------------- 710
           + FS     E  SR G GVR    K+G  +  +      E  T                 
Sbjct: 711 IRFSATDARETKSRTGIGVRGMKLKEGQKVVSMAVLDAGERDTEVREAYLRAAEWKNNEN 770

Query: 711 ------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVP----KGFPRSG 748
                              +    R Y +  +        RGG+G            R+G
Sbjct: 771 DYTLDAEKVEEMAEAEEFILTLTSRGYGKISSAYEYRTIGRGGMGLTNIGEPSSNPDRNG 830

Query: 749 KFLSS 753
             ++S
Sbjct: 831 TVVAS 835



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 32/152 (21%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-------EEKMKLVVKVT-G 658
           + ++   +L ++S+G   I    E     R G     +            +     V  G
Sbjct: 782 MAEAEEFILTLTSRGYGKISSAYEYRTIGRGGMGLTNIGEPSSNPDRNGTVVASFPVKHG 841

Query: 659 DHVAVVGENRKLLIFSIDQIPEM--------------SRG-KGVRLQSYKDGGISDVICF 703
             + +V +  KL+   I+    +               RG  GVR+ +   G        
Sbjct: 842 SQLMLVTDQAKLIRLPIN-FRYLLENGFENHEGYSISGRGSSGVRIFNVAKGEQIV---- 896

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
               G   ID      N++E  +   +  RGG
Sbjct: 897 ----GAALIDETEEPENQAEELVQDEIAARGG 924


>gi|145629699|ref|ZP_01785495.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.1-21]
 gi|144978036|gb|EDJ87815.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.1-21]
          Length = 747

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 274/749 (36%), Positives = 434/749 (57%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLAPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKVELMARFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 ASP-----RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +   +  + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDSYLAHACGKSNQAVAFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 651 TSAGRMLIFPAQDLPVLSKGKGNKMITILAANAKDRSELLTKLLLISDQASLEFYSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRAERGRKGSTLPRGLHTN 739


>gi|261419950|ref|YP_003253632.1| DNA topoisomerase IV subunit A [Geobacillus sp. Y412MC61]
 gi|297530089|ref|YP_003671364.1| DNA topoisomerase IV subunit alpha [Geobacillus sp. C56-T3]
 gi|319766764|ref|YP_004132265.1| DNA topoisomerase IV, subunit alpha [Geobacillus sp. Y412MC52]
 gi|261376407|gb|ACX79150.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y412MC61]
 gi|297253341|gb|ADI26787.1| DNA topoisomerase IV, A subunit [Geobacillus sp. C56-T3]
 gi|317111630|gb|ADU94122.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y412MC52]
          Length = 814

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 218/757 (28%), Positives = 390/757 (51%), Gaps = 24/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F
Sbjct: 1   MAERLLEMPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYMDGNTADKPF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  L+   GN G+IDGD  AA RYT
Sbjct: 61  RKAAKTVGNVIGNFHPHGDSSVYEAMVRMSQEWKLRNVLVEMHGNNGSIDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +D++ V F   +++   EP V P+ FPNLL NG++GI+ G AT IP
Sbjct: 121 EARLSAIAAELLRDIDKETVPFVPNFDDTTDEPTVLPAMFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H + E+ +A L  ID P+ ++++L+  + GPDFPTGG I++ ++ I ++Y  GRG   +
Sbjct: 181 PHALGEVIDAVLMRIDRPDCTVDELMTVLPGPDFPTGG-IIQGKDGIRKAYETGRGKIII 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E+   G   IV+TE+PY+V K+ L++KI EL + K++  + D+RDE+  +   +
Sbjct: 240 RAKAAIEQGKGGKKHIVITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++  ++  +D++  +     V    R P++M L  +L  ++AHR+EV+
Sbjct: 300 VIELKKDADAEAILNYLYKNTDLQVPYSF-NMVAIHERRPKLMSLPELLDAYIAHRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
             RS F ++  + R  I+ GL+ A   +DE+IA IR     +     +++ +  TE Q +
Sbjct: 359 TNRSHFELKKANERKHIVDGLIRALSILDEVIATIRASSDKRDAKERLMAHYGFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E + L     ++  +L   K+    I  E++ +K+ ++  
Sbjct: 419 AIVTLQLYRLTNTDITALRQEAEELDQAIAELTGILADEKKLLGVIKKELKTMKKQYADE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T  E    +     +A+I  E + V ++  G+++     S    +   +  K
Sbjct: 479 ------RRTVIEEEIEELKVKVEALIPAEDVIVTVTKEGYVKRTSYRSYSASNGQDMGMK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D L   L  +TTD +LL +  G     P   L   R       I  LI L  + ++V 
Sbjct: 533 ETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKEVGQHISHLIPLERDDELVA 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-D 659
           A     +++  +L+ V+ +G     E ++       +    + V  ++ +  V    G  
Sbjct: 593 AVPVSSFNTGEQLIFVTKQGLVKRTELAQYQVQRYTRPLVAVNVKEDDDVIAVYATDGCG 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVIC-FKICEGLTWIDSAGR 717
           H+ +   +   L+F+ ++I  +  R  GV+    K+G      C  ++ EG +++    R
Sbjct: 653 HLWLATHDGHALLFAEEEISLVGVRAAGVKGIQLKEGDFVAAACPVRLEEGGSFVVVTQR 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
              +           R   G ++ +    +  + + +
Sbjct: 713 GAVKKVAMSEFEPSSRAKRGVVIVREVKSNPHRVVGA 749


>gi|145639072|ref|ZP_01794680.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittII]
 gi|145272044|gb|EDK11953.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittII]
 gi|309751024|gb|ADO81008.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae R2866]
          Length = 747

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 274/749 (36%), Positives = 435/749 (58%), Gaps = 22/749 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 A-----SSRMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 531 AGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVV 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 591 MASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++L+F    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 651 TSAGRMLLFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 711 IVLKPEDLQKFRAERGRKGSTLPRGLHTN 739


>gi|71893880|ref|YP_279326.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae J]
          Length = 868

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 236/755 (31%), Positives = 397/755 (52%), Gaps = 24/755 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ M+E+G+  G ++
Sbjct: 57  ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 116

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYT
Sbjct: 117 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 176

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++G+ ++ VDFR  Y+  + EP V P+KFPNLL +G SGIAVGM T IP
Sbjct: 177 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 236

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI  + +    NP+I I +L+  + GPDFPTG  I   ++ I ++Y  G+G F +
Sbjct: 237 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIY-GKKGINQAYLTGKGSFII 295

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+  EIPY+V+K  +IEK+A L+  K+I  ++D+RDES+     V
Sbjct: 296 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 355

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   +   P++++  ++  +D++  + +NM  L    VP++M L  I   +L H++E+ 
Sbjct: 356 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALV-NGVPKLMNLAQIFNYYLEHQKEIN 414

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            R  +F ++    ++ +L+G+ +A  NIDE+I II++       +  +   ++L   Q  
Sbjct: 415 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNSGQTK 474

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L  L   ++ +E++ L  E  +I S+++S K+  + I  + + V   F   
Sbjct: 475 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDP 534

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALHF 545
               RR     E+   D+  L           +   V        R      +   A + 
Sbjct: 535 ----RRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMVLDEYRLQNRGGIGTLASNH 590

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
            + D LK     +T   +L++S+  K + L A  +  G   G+   I  LI L  N+ I 
Sbjct: 591 YKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIKLEKNESIS 650

Query: 604 TAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
               ++       L+ VS+ GN      S     T+ GK  LK+   + +        + 
Sbjct: 651 NLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLVENDYLVSAFIAPNNP 710

Query: 660 --HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             ++ +      +  +SI  + +  R   GV+    ++G      CF   +       + 
Sbjct: 711 DLNILIGSSQGFVNRWSIKLLRDSGRTAIGVKGIKLEEGHKIIGACFAF-DNHFIFSLSK 769

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + + +        L  R   G +      ++G  +
Sbjct: 770 KGFGKKTQVGEYRLTGRTTKGLMSLDA-KKAGNLV 803



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMK 651
           I L     I+ A        +  +S KG     +  E     R  K  + + +++   + 
Sbjct: 744 IKLEEGHKIIGACFAFDNHFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKKAGNLV 803

Query: 652 LVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +  +  +  A++  +    +   +D +P +SR  KGV++ + K G     +  
Sbjct: 804 FISAIKNNEEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSL 857



 Score = 41.7 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 45/125 (36%), Gaps = 3/125 (2%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           + +  +  +EG  +  A  A     I  LS  G       G         + +   +D  
Sbjct: 739 IGVKGIKLEEGHKIIGACFAFDNHFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMS-LDAK 797

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVK 655
              ++V      +  + ++ + KG A  ++     II+   KG   + +   +++  V  
Sbjct: 798 KAGNLVFISAIKNNEEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSL 857

Query: 656 VTGDH 660
           ++ + 
Sbjct: 858 ISKNE 862


>gi|194014901|ref|ZP_03053518.1| DNA topoisomerase IV, A subunit [Bacillus pumilus ATCC 7061]
 gi|194013927|gb|EDW23492.1| DNA topoisomerase IV, A subunit [Bacillus pumilus ATCC 7061]
          Length = 812

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 214/754 (28%), Positives = 380/754 (50%), Gaps = 23/754 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+
Sbjct: 4   QERFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYAEGNTQDKNFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSAIASELLKDLDKETVEFVANFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  +  I+ P  ++E L+  I GPDFPTGG I++  + I ++Y  G+G   +R
Sbjct: 184 HHLGEVIDGVIKRIEQPHCTVEDLMTVIKGPDFPTGG-IIQGVDGIKKAYETGKGKIMIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E +  G   IV+TEIPY+V K+ L++K+ E  I +++  + ++RDE+      ++
Sbjct: 243 GKAEIETIRGGRQQIVITEIPYEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D + ++  ++  SD++  +     V    R P +M L  IL  ++AH++EV+ 
Sbjct: 303 VELKKEADANGVLNFLYKNSDLQIPYNF-NMVAIHNRRPTLMTLTTILDAYIAHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDA 430
            RS++ ++    R  I+ GL+ A   +DE+IA IR+ +  +     ++ ++  TE Q +A
Sbjct: 362 NRSAYELRKAKERHHIVDGLIKALSILDEVIATIRSSNDKRDAKNNLMDKYDFTEAQSEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +  Q++ E   L     +++ +L + K+    I   ++++K+ ++   
Sbjct: 422 IVSLQLYRLTNTDITQLRDEASELDVRIAELEDILGNEKKLLKVITNSLKKLKKTYADE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R +  E    +     + MI  E + V ++  G+I+     S    +      K+
Sbjct: 481 -----RRSVIEEKIEEIKINLEVMIASEDVYVTVTKDGYIKRTSQRSYAASNGKDFGMKD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D L      +TTD +LL +  G     P   L   R       I  +I ++ ++ I  A
Sbjct: 536 TDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHITNIISIDRDESIQKA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DH 660
                +D T  LL  +  G     E  +  A    K    L +   +++  V   TG   
Sbjct: 596 IPIKEFDETSYLLFFTKGGMVKKTELLQYKAQRYSKPLVALNLKGNDELVDVHVTTGQQE 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +  +N   L F  +++  +  R  GV+  + KDG           +    + +  R  
Sbjct: 656 LFIATKNGYGLWFDEEEVSVVGPRAAGVKGINLKDGDEVVSGQIIDPKNDVLVLTTQRGA 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
            +  N        R   G L+ +   ++  + ++
Sbjct: 716 VKRMNLSEFDKTSRAKRGVLMLRELKKNPHRIVA 749


>gi|312885198|ref|ZP_07744877.1| DNA topoisomerase IV subunit A [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367138|gb|EFP94711.1| DNA topoisomerase IV subunit A [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 750

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 276/758 (36%), Positives = 461/758 (60%), Gaps = 27/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN  T   + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSNEITY--DGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 59  LSAAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 118

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIA
Sbjct: 119 SFAAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIA 178

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+ +AA+ LIDNP+  +  ++E++ GPD+PT   I+  +  + + YR
Sbjct: 179 VGMATDIPPHNVREVAKAAIHLIDNPKSELSDVMEFVQGPDYPTEAEIISPKAELEKMYR 238

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W      +    I++T +P+QV  ++L+E+IA  + AK++P+++D+RDE
Sbjct: 239 TGRGSIKMRAVW-----KKEGPEIIITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDE 293

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM  +F  +D+E  + +N+N++ +   PQV  L  IL 
Sbjct: 294 SDHENPTRIVIVPRSNRIDCDQLMNHLFASTDLEKNYRVNLNMIGLDNRPQVKGLVQILA 353

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+ +RR  + RR  +R+  +  R+ +L+GLL+AYLN+DE+I IIRNED+PK  ++SRF 
Sbjct: 354 EWIEYRRATVRRRLQYRLDKVLARLHVLEGLLVAYLNLDEVIEIIRNEDEPKAELMSRFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q DAIL+ +LR L KLEE +I+ E + L  E++K+++LL S ++    +  EI   
Sbjct: 414 LTEIQADAILDTKLRHLAKLEEMKIRGEQEELEKERKKLETLLGSERRLNTLLKKEIEAD 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   A KA  ++ ++  EPITVV+S++GW+R  K H +D + 
Sbjct: 474 AEKYGD-----DRRSPLIEREEA-KALTERDLVPSEPITVVLSDKGWVRHAKGHELDPAT 527

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD         ++  ++LL +DG++Y+L + +L S R  GE I   ++++   +I
Sbjct: 528 LNYKSGDKYLAHARGKSSQPVVLLGSDGRSYSLESHSLPSARSQGEPITGRLNISSGSNI 587

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGD 659
               + +     LV S  G  F+ + S++++ ++ GK  + +    ++     +  +  D
Sbjct: 588 RHLVMGEEEQLWLVGSDAGYGFVCKGSDLLSKSKSGKALVNLPESSEVLPPYAIGHLDSD 647

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +  V    ++L+F I  +P++ +GKG ++ +        +D  +S +I       +T +
Sbjct: 648 EILAVTNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKSRDEFVSHLIALPKGRTVT-L 706

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R     E+DL  + G+RG  G L+P+G  R  + 
Sbjct: 707 YAGKRKLGLKESDLDSFRGERGRRGGLLPRGLQRVTRI 744


>gi|329113567|ref|ZP_08242347.1| DNA gyrase subunit A [Acetobacter pomorum DM001]
 gi|326697089|gb|EGE48750.1| DNA gyrase subunit A [Acetobacter pomorum DM001]
          Length = 920

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 255/852 (29%), Positives = 396/852 (46%), Gaps = 107/852 (12%)

Query: 6   ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           IS+   + E  ++  V++   +   YLAYA+S I  RA+PD+RDG KPVHRRI++AM E 
Sbjct: 4   ISDQPGVPEPSDLLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMHES 63

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G  +   ++KSAR VGEV+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGD
Sbjct: 64  GFTYDKPYRKSARAVGEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDGD 123

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+ + +  +L  +D D VDF+  Y+E + EP V P+ FPNLL NG +GIA
Sbjct: 124 SPAAMRYTEARLAKASTFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGATGIA 183

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP+HN  E+ +A LALI NP++S++ L+EY+ GPDFPTGGII+  R  I  ++ 
Sbjct: 184 VGMATNIPTHNPSEVIDATLALIANPDLSLDDLMEYVPGPDFPTGGIIL-GRSGIRSAFA 242

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +EE+ +    I+VTEIPYQV K+ L E+IA+L+  K+I  + DIRDE
Sbjct: 243 TGRGAVIIRAKADIEEIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIRDE 302

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V+    R   P++++  ++  + ++T F +NM  L  G  P++M L  +L+ +
Sbjct: 303 SDRSGMRVVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALD-GGKPRLMGLKDVLEAF 361

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--------------- 409
           +A R EV+ RRS F +     R  IL GL+IA  NID +IA+IR                
Sbjct: 362 IAFREEVILRRSRFELNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAAQ 421

Query: 410 -------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                         D    V+  +  LTE Q   IL LRL+ L  LE  +I+ EL  +  
Sbjct: 422 WDAAEVEPLLALIHDDGNVVVDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEVAQ 481

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++  ++ S  ++   +  E+   +                 +   +     Q  +  
Sbjct: 482 RINELLEIIGSHVRRMEVLRDELSVARAEIFTPRMTEIADYAGDQDDESLIEPGQMVVTI 541

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +  +     R+        +    +  D +  + +AHT   ++  S+ GK Y   
Sbjct: 542 TREGFIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYRQK 601

Query: 577 AGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEE 628
              L       +  A+  L+    +  I                 L+  ++ GN      
Sbjct: 602 VWRLPEAGPAAKGRALVNLLPDLGSDSITAVLPLPQDEELWEALHLVFATASGNVRRNRL 661

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEM-SRG 684
           S+       G   +K+   + +  V     G  V +     + + F I    +     RG
Sbjct: 662 SDFRNIRSSGMIAMKLDEGDSLIGVATCREGQDVFLATRGARCIRFQITDDTLRVFAGRG 721

Query: 685 ----KGVRL------QSY------------------------------------------ 692
               +G+RL       S                                           
Sbjct: 722 SSGVRGIRLAEGDRVISLAVLNHVEATVEERSAYLRMANAKRRAENAAEAAEEDVDAVQP 781

Query: 693 ---KDGGISDVIC-------FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              ++G  +D +         ++ E +  I S G  + R  +     +  RGG G     
Sbjct: 782 DSDEEGSDTDALLSPERFEQLEVAEEILLIVSDG-GFGRRSSAYDYRVSGRGGQGITNMT 840

Query: 743 GF-PRSGKFLSS 753
               + GK +++
Sbjct: 841 FSANKRGKEVAA 852



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKV-----SSEEKMKLVVKV-TGDHVAVVGEN 667
           LL+VS  G        +   + R G+    +        +++   + V  G  V +V + 
Sbjct: 809 LLIVSDGGFGRRSSAYDYRVSGRGGQGITNMTFSANKRGKEVAATLPVLAGTDVMLVTDA 868

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            +L+   +DQ+  M+R   GV L    D      +
Sbjct: 869 GRLIRVPVDQVRVMARQASGVTLFRLNDDERVTSV 903


>gi|293511563|ref|ZP_06670257.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809]
 gi|291465521|gb|EFF08053.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809]
          Length = 829

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 223/707 (31%), Positives = 368/707 (52%), Gaps = 30/707 (4%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD 
Sbjct: 1   MTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDG 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAV
Sbjct: 61  AAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  
Sbjct: 121 GMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYET 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE+
Sbjct: 180 GRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDET 239

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +      V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +
Sbjct: 240 SLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHY 298

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           L H++ V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +        +  RF
Sbjct: 299 LEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRF 358

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E
Sbjct: 359 KLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTE 418

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           +++ F        RRT         +    + +I +E I + +S+  +I+          
Sbjct: 419 IRDRFGD-----DRRTEI--QLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQ 471

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
                 +  ++  E D +   +   T D +L  +  G+ Y L    +       +   + 
Sbjct: 472 NRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVV 531

Query: 592 LLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             I+L +++ I T             L+  + +G       S      R GK  +    +
Sbjct: 532 NAIELENDEIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFRED 591

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +++  V   +G + + +   +  L+ F    +  + R   GV+  + ++G     +    
Sbjct: 592 DELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAH 651

Query: 706 CEG-LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                  +      Y +        L  RGG G        R+G  +
Sbjct: 652 ANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 698



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 7/116 (6%)

Query: 594 IDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
           I L    ++V   V  +    ++LVV+  G       ++   + R GK      +   + 
Sbjct: 636 ITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNG 695

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             + +      + + +V     ++   +  I +  R  +GVRL    D      + 
Sbjct: 696 NVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 751



 Score = 40.9 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA++ D +L+++ +G     P  +       G+ I+       N ++V          L+
Sbjct: 651 HANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLM 710

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +V++ G    ++ ++I  N R   G   +++  ++ +  V KV
Sbjct: 711 IVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKV 753


>gi|258543484|ref|YP_003188917.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01]
 gi|256634562|dbj|BAI00538.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01]
 gi|256637620|dbj|BAI03589.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-03]
 gi|256640672|dbj|BAI06634.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-07]
 gi|256643729|dbj|BAI09684.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-22]
 gi|256646784|dbj|BAI12732.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-26]
 gi|256649837|dbj|BAI15778.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-32]
 gi|256652825|dbj|BAI18759.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655881|dbj|BAI21808.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-12]
          Length = 921

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 243/748 (32%), Positives = 371/748 (49%), Gaps = 44/748 (5%)

Query: 6   ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           IS+   + E  ++  V++   +   YLAYA+S I  RA+PD+RDG KPVHRRI++AM E 
Sbjct: 4   ISDQPGVPEPSDLLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMHES 63

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G  +   ++KSAR VGEV+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGD
Sbjct: 64  GFTYDKPYRKSARAVGEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDGD 123

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+ + +  +L  +D D VDF+  Y+E + EP V P+ FPNLL NG +GIA
Sbjct: 124 SPAAMRYTEARLAKASTFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGATGIA 183

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP+HN  E+ +A LALI NP++S++ L+EY+ GPDFPTGGII+  R  I  ++ 
Sbjct: 184 VGMATNIPTHNPSEVIDATLALIANPDLSLDDLMEYVPGPDFPTGGIIL-GRSGIRSAFA 242

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +EE+ +    I+VTEIPYQV K+ L E+IA+L+  K+I  + DIRDE
Sbjct: 243 TGRGAVIIRAKADIEEIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIRDE 302

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V+    R   P++++  ++  + ++T F +NM  L  G  P++M L  +L+ +
Sbjct: 303 SDRSGMRVVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALD-GGKPRLMGLKDVLEAF 361

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--------------- 409
           +A R EV+ RRS F +     R  IL GL+IA  NID +IA+IR                
Sbjct: 362 IAFREEVILRRSRFELNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAAQ 421

Query: 410 -------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                         D    V+  +  LTE Q   IL LRL+ L  LE  +I+ EL  +  
Sbjct: 422 WNAADVEPLLALIHDDGNVVVDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEVAQ 481

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++  ++ S  ++   +  E+   +   +             +   +     Q  +  
Sbjct: 482 RINELLEIIGSHVRRMEVLRDELSVARAEIATPRMTEIADYAGDQDDESLIEPGQMVVTI 541

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +  +     R+        +    +  D +  + +AHT   ++  S+ GK Y   
Sbjct: 542 TREGFIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYRQK 601

Query: 577 AGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEE 628
              L       +  A+  L+    +  I                 L+  ++ GN      
Sbjct: 602 VWRLPEAGPAAKGRALVNLLPDLGSDSITAVLPLPQDEELWEALHLVFATASGNVRRNRL 661

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEM-SRG 684
           S+       G   +K+   + +  V     G  V +     + + F I    +     RG
Sbjct: 662 SDFRNIRSSGMIAMKLDEGDSLIGVATCREGQDVFLATRGARCIRFQITDDTLRVFAGRG 721

Query: 685 -KGVRLQSYKDGGISDVICFKICEGLTW 711
             GVR     +G     +        T 
Sbjct: 722 SSGVRGIRLAEGDRVISLAVLNHVEATV 749



 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-----SSEEKMKLVVKV-TGDHVA 662
           ++   LL+VS  G        +   + R G+    +        +++   + V  G  V 
Sbjct: 805 EAEEILLIVSDGGFGRRSSAYDYRVSGRGGQGITNMTFSANKRGKEVAATLPVLEGTDVM 864

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V +  +L+   +DQ+  M+R   GV L    D      +
Sbjct: 865 LVTDAGRLIRVPVDQVRVMARQASGVTLFRLNDDERVTSV 904



 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 10/34 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           I  G   +      + +     +     RGG G 
Sbjct: 532 IEPGQMVVTITREGFIKRTPLDVFRAQNRGGRGR 565


>gi|148271185|ref|YP_001220746.1| DNA gyrase subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829115|emb|CAN00012.1| DNA gyrase subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 895

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 230/767 (29%), Positives = 384/767 (50%), Gaps = 36/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + ++ V L+  ++  +L YA+S I +RA+P++RDG KPVHRR+I+AM + G     +
Sbjct: 60  VTHDRIEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRS 119

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F KSAR+VGEV+G+ HPHGD S+YD+LVRL QP+  RYPL  GQGNFG+   D AAA RY
Sbjct: 120 FFKSARVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRY 179

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE +M  +A  +++ + ED VDF+D Y+    EP + PS+FPNLL NG+ GIAVGMAT+I
Sbjct: 180 TETKMAPLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNI 239

Query: 192 PSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+   A  L+ +P+ +    +E LLE I GPDFPTG  ++   + I+E+YR GR
Sbjct: 240 PPHNLREVASGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVL-GTKGILEAYRTGR 298

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G   +RA   VEE+ +G  C+VVTE+PYQV    L  KIAEL+   ++  + DIRDE++ 
Sbjct: 299 GSITMRAVVAVEEI-QGRVCLVVTELPYQVNPDNLAIKIAELVKDGKLGGVADIRDETSG 357

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              + ++    R     +++ +++  + ++  F  NM  +    +P+ + LDG +  W+ 
Sbjct: 358 RTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVD-GIPRTLALDGFISAWVD 416

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SL 423
           H+ +V+ RR+ +R+   + R  IL+G L A   +D++IA+IR  +  +           +
Sbjct: 417 HQIDVIVRRTQYRLNEAEARAHILRGYLKALDALDDVIALIRRSETVEVARSGLMKLLDI 476

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q +AIL ++LR L  LE  +I+ +   L     + + +L +   Q   I+ E++E+ 
Sbjct: 477 DELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEYNHILATPTVQREIISTELQEIT 536

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           + +        RRT    +   D     + +I +E + V ++  G+I+            
Sbjct: 537 DKYGD-----DRRTEI--MLGFDGDMSMEDLIPEEEMVVTVTRGGYIKRTRIDNYRSQHR 589

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLL 593
               +     +  D ++      T   +L L+  G+ Y   A  L       +   +  L
Sbjct: 590 GGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYELQEAGRDAKGQHVANL 649

Query: 594 IDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + +  +++I              L++ +  G       +E   N   G   + +   + +
Sbjct: 650 LAMQPDEEIQQVLDIRDYQVAQYLVLATRDGLMKKTALTEYDTNRTGGIIAINLRDGDAL 709

Query: 651 KLV-VKVTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
               +    D + +V      L FS D   +  M R   GV+  +++             
Sbjct: 710 VSALLVDEDDDLLLVSRKGMSLRFSADNQALRPMGRSTSGVKGMTFRGDDTLLSASVVGE 769

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +G          + +        +  RGG+G  V K     G    +
Sbjct: 770 QG-YVFVVTEGGFAKRTAADQYRVQNRGGMGIKVAKLQDARGDLAGA 815



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 49/155 (31%), Gaps = 10/155 (6%)

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--K 639
              G   +    +    +  +++A V      + VV+  G A      +     R G   
Sbjct: 741 RPMGRSTSGVKGMTFRGDDTLLSASVVGEQGYVFVVTEGGFAKRTAADQYRVQNRGGMGI 800

Query: 640 TFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              K+     +    ++    D + VV  + K++   + ++P   R   GV    + D  
Sbjct: 801 KVAKLQDARGDLAGALIVGEEDEILVVLASGKVVRSVVAEVPAKGRDTMGVVFARFADDD 860

Query: 697 ISDVICFKICEGLTWIDSA-----GRSYNRSENDL 726
               +       L   ++A     G +  +   D 
Sbjct: 861 RIISLAKNSERNLVVPEAAPDASDGTAAGKGTPDE 895


>gi|330814109|ref|YP_004358348.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487204|gb|AEA81609.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063]
          Length = 877

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 249/820 (30%), Positives = 391/820 (47%), Gaps = 80/820 (9%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V++ ++  ++   ++  YL+YA+S I  RA+PD RDG KPVHRRII AM + G D+   
Sbjct: 1   MVDKKIEIRNVTDEMKASYLSYAMSVIVSRALPDARDGLKPVHRRIIFAMYKGGYDWSKQ 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSAR+VG+VIGK HPHGDQ+VYD+LVRLAQ F     L+ GQGNFG++DGD AAA RY
Sbjct: 61  FRKSARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMSLTLLDGQGNFGSLDGDRAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ +VAE ++  +D++ VDF++ Y++ + EPVV P+++PNLL NG SGIAVGMAT+I
Sbjct: 121 TETRLAKVAEFLISDIDKNTVDFQNNYDDTELEPVVLPAQYPNLLVNGASGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ E  L  IDN EI+I++L++ I GPDFPTGG I+  +  I+  Y  GRG  +
Sbjct: 181 PPHNLGEVIEGTLKYIDNNEITIKELMKVIPGPDFPTGG-IIIGQNDIIPGYEKGRGSIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R    VEE  +    IV+  +PYQV K+ LIEKIAELI  K+I  + D+RDES +D   
Sbjct: 240 IRGEIEVEEGSKDKKIIVIKSVPYQVNKTVLIEKIAELIRDKKIEGISDLRDESNKDGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     +++   +++  ++  S ++T F  N   ++  + P+++ L   +K ++  R +V
Sbjct: 300 IAITVKKNVSEAIIINQLYKFSPLQTSFGFNTLAIN-EKKPELLNLKQFIKIFVDFREKV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------- 415
           L +R+ F ++    R  IL GL I+  NIDE+I+IIR    P                  
Sbjct: 359 LTKRTLFELKKAKDRTHILIGLFISIENIDEVISIIRKSKDPSEAKATLLKKVWSFQKSK 418

Query: 416 -----------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                           + L+++QV AIL LRL+ L  +   +I SEL +L     K   +
Sbjct: 419 IDKDVLEVNELSTKKEYQLSDHQVKAILELRLQKLTNIGHEEINSELQDLYKLIVKYKKI 478

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           LN  K+  N I  E+ E+K+ F+                       +  +       +  
Sbjct: 479 LNDKKELQNLIKTELAEIKKKFAVPRRTKLVGAVENVDVEDVIQEEKVIVTVTNKGYIKR 538

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-- 582
           +    IR+ K      + +  +E D +       T   +L  S+ G  Y L A  +    
Sbjct: 539 TPLTSIRAQKRGGKGKTGIVTREEDFVSQLFPVSTLTPVLFFSSKGIVYRLKAWKIPEGS 598

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTR 636
               G+A+  +  +  +  I +               L+ V++ G        +      
Sbjct: 599 NTSKGKALANIFPIKADAQISSILPLPYDQSTWKDNFLIFVTANGKIRKNSILDFENIQA 658

Query: 637 KGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRLQSYK 693
            GK  +K+  ++K+  V  V   D V +   + K L  +  +I     R  KG++  + K
Sbjct: 659 NGKIAMKLEKDDKIVSVKIVKKNDDVMLNTYSGKSLRINASKIRIFKGRSSKGIKGINLK 718

Query: 694 DGGISDVICFKIC----------------------------------------EGLTWID 713
           +      +                                                  + 
Sbjct: 719 NNDKVISLTVLNHVTTTSEETKAYIKRTRKDDLENTDDTNFEISTKKYEELKLREEFILT 778

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                Y +  +        RGG G +      R+G   +S
Sbjct: 779 ITENGYGKRSSSYEFRESGRGGQGIINIISSERNGNIAAS 818



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 6/102 (5%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGE 666
              +L ++  G        E   + R G+  + +     +            D + ++  
Sbjct: 773 EEFILTITENGYGKRSSSYEFRESGRGGQGIINIISSERNGNIAASYSVKNDDDIMLITN 832

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKIC 706
             +++  ++  I    R  +GVR+    K+  +   +C    
Sbjct: 833 KGQMIRCAVSDIRITGRNTQGVRIFKVEKNEKVVSSVCLTDS 874


>gi|170780470|ref|YP_001708802.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155038|emb|CAQ00134.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 886

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 230/767 (29%), Positives = 383/767 (49%), Gaps = 36/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + ++ V L+  ++  +L YA+S I +RA+P++RDG KPVHRR+I+AM + G     +
Sbjct: 51  VTHDRIEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRS 110

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F KSAR+VGEV+G+ HPHGD S+YD+LVRL QP+  RYPL  GQGNFG+   D AAA RY
Sbjct: 111 FFKSARVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRY 170

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE +M  +A  +++ + ED VDF+D Y+    EP + PS+FPNLL NG+ GIAVGMAT+I
Sbjct: 171 TETKMAPLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNI 230

Query: 192 PSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+   A  L+ +P+ +    +E LLE I GPDFPTG  ++   + I+E+YR GR
Sbjct: 231 PPHNLREVAAGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVL-GTKGILEAYRTGR 289

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G   +RA   VEE+ +G  C+VVTE+PYQV    L  KIAEL+   ++  + DIRDE++ 
Sbjct: 290 GSITMRAVVAVEEI-QGRVCLVVTELPYQVNPDNLAIKIAELVKDGKLAGVADIRDETSG 348

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              + ++    R     +++ +++  + ++  F  NM  +    +P+ + LDG +  W+ 
Sbjct: 349 RTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVD-GIPRTLALDGFISAWVD 407

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SL 423
           H+ +V+ RR+ +R+   + R  IL+G L A   +D++IA+IR  +  +           +
Sbjct: 408 HQIDVIVRRTQYRLNEAEARAHILRGYLKALDALDDVIALIRRSETVEVARSGLMKLLDI 467

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q +AIL ++LR L  LE  +I+ +   L     +   +L +   Q   I+ E++E+ 
Sbjct: 468 DELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEYKHILATPTVQREIISTELQEIT 527

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           + +        RRT    +   D     + +I +E + V ++  G+I+            
Sbjct: 528 DKYGD-----DRRTEI--MLGFDGDMSMEDLIPEEEMVVTVTRGGYIKRTRIDNYRSQHR 580

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLL 593
               +     +  D ++      T   +L L+  G+ Y   A  L       +   +  L
Sbjct: 581 GGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYELQEAGRDAKGQHVANL 640

Query: 594 IDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + +  +++I              L++ +  G       +E   N   G   + +   + +
Sbjct: 641 LAMQPDEEIQQVLDIRDYQVAQYLVLATRDGLMKKTALTEYDTNRTGGIIAINLRDGDAL 700

Query: 651 KLV-VKVTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
               +    D + +V      L FS D   +  M R   GV+  +++             
Sbjct: 701 VSALLVDEDDDLLLVSRKGMSLRFSADNQALRPMGRSTSGVKGMTFRGDDTLLSASVVGE 760

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +G          + +        +  RGG+G  V K     G    +
Sbjct: 761 QG-YVFVVTEGGFAKRTAADQYRVQNRGGMGIKVAKLQDARGDLAGA 806



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 49/155 (31%), Gaps = 10/155 (6%)

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--K 639
              G   +    +    +  +++A V      + VV+  G A      +     R G   
Sbjct: 732 RPMGRSTSGVKGMTFRGDDTLLSASVVGEQGYVFVVTEGGFAKRTAADQYRVQNRGGMGI 791

Query: 640 TFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              K+     +    ++    D + VV  + K++   + ++P   R   GV    + D  
Sbjct: 792 KVAKLQDARGDLAGALIVGEEDEILVVLASGKVVRSVVAEVPAKGRDTMGVVFARFADDD 851

Query: 697 ISDVICFKICEGLTWIDSA-----GRSYNRSENDL 726
               +       L   ++A     G +  +   D 
Sbjct: 852 RIISLAKNSERNLVVPEAAPDASDGTAAGKGTPDE 886


>gi|298491612|ref|YP_003721789.1| DNA gyrase subunit A ['Nostoc azollae' 0708]
 gi|298233530|gb|ADI64666.1| DNA gyrase, A subunit ['Nostoc azollae' 0708]
          Length = 835

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 246/777 (31%), Positives = 392/777 (50%), Gaps = 37/777 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLSTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  V    +L  + E+ V+F   ++    EP V P++ P LL NG +GIAVGMA
Sbjct: 126 RYTETRLAPVGHEGMLTEIGEETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCAGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  + LIDNP+++ EKL E I GPDFPTGG IV     I E+Y  G+G
Sbjct: 186 TNIPPHNLGEVVDGLIVLIDNPDLTDEKLFEIIPGPDFPTGGEIV-GNSGIREAYTTGKG 244

Query: 249 GFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G  +R    +EE+      +    I++TE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 245 GIVLRGVATLEEMLPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNQGRLQGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R  +P  +++ ++  + ++T F   +  L     P+ + L   L+E
Sbjct: 305 ESDREGMRVVIELKRDTNPQEILQHLYHQTALQTTFGAILLALV-EGQPRQLSLRQTLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSR 420
           +L  R   L RR S+ +   + RV ++ GLL A   +DE+IAI+R           +  +
Sbjct: 364 FLNFREHTLNRRYSYELGKAENRVNLVAGLLKALSKLDEVIAILRQAADGSTAKMNLCRQ 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L+E Q DAIL++ LR L  LE+  ++ E D+L  +   +  LL   ++    +  ++R
Sbjct: 424 LDLSEVQADAILSMPLRRLTSLEQQNLQQEFDSLNEQITSLRRLLEDRRELLKALKKDLR 483

Query: 481 EVKEIFSKSTDLG-----------RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
            +K  +S                  + TT  E +   K    ++    E   +  + RG+
Sbjct: 484 SLKRKYSDPRRTKILAINETPIKSEKGTTETEDNPKSKLQTPKSEQPPEEAILEFTQRGY 543

Query: 530 IRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +R L              E D +       T   +L+L+T GK Y +  G++ +  G   
Sbjct: 544 VRRLSPTGKKPKAENGLHENDFIIQTELTDTEKDLLILNTGGKVYPVKVGDIPAITGRSP 603

Query: 589 AIQLLIDL------NHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGK 639
               LI +       + + +V  FV   T    ++L+++ +G    +   E    +R+G 
Sbjct: 604 RGTPLITMLTSTAQGNVEGVVNRFVLPETPERSQMLLLTKQGRIKRLSMEEFANLSRRGI 663

Query: 640 TFLKVSSEEKMKLVVK-VTGDHVAVVGENRKLLIF--SIDQIPEMSRGK-GVRLQSYKDG 695
           T LK+  ++++       TG H+ +   + +LL F  + +Q+P M R   G++       
Sbjct: 664 TILKLKDDDELSFTQFTTTGQHLILASSSGRLLRFAVNEEQLPIMGRAAMGLQAFRLLKN 723

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               V C  + +    +      Y +           RG +G  + K   ++     
Sbjct: 724 Q-QMVGCATVGKDDQLLLVTQEGYAKRIPASNLRAANRGDLGIQMLKFHNKTDNLAG 779



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 15/207 (7%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
               +    ++++ +G I+ L            ++ L  K+ D L       T   ++L 
Sbjct: 630 PETPERSQMLLLTKQGRIKRLSMEEFANLSRRGITILKLKDDDELSFTQFTTTGQHLILA 689

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
           S+ G+                 A+ L    L  NQ +V         +LL+V+ +G A  
Sbjct: 690 SSSGRLLRFAVNEEQLPIMGRAAMGLQAFRLLKNQQMVGCATVGKDDQLLLVTQEGYAKR 749

Query: 626 VEESEIIANTRK--GKTFLKV-SSEEKMKL-VVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
           +  S + A  R   G   LK  +  + +   V    G  VA+V    +++   +D +P +
Sbjct: 750 IPASNLRAANRGDLGIQMLKFHNKTDNLAGMVRATPGVEVALVSNKERVVRIPVDTVPIL 809

Query: 682 SR-GKG--VRLQSYKDGGISDVICFKI 705
            R  KG  V LQ  +D  I  V+   +
Sbjct: 810 DRDAKGESV-LQLNRDEKIITVVEVGV 835


>gi|312601479|gb|ADQ90734.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 168]
          Length = 853

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 236/755 (31%), Positives = 397/755 (52%), Gaps = 24/755 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ M+E+G+  G ++
Sbjct: 42  ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 101

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYT
Sbjct: 102 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 161

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++G+ ++ VDFR  Y+  + EP V P+KFPNLL +G SGIAVGM T IP
Sbjct: 162 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 221

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI  + +    NP+I I +L+  + GPDFPTG  I   ++ I ++Y  G+G F +
Sbjct: 222 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIY-GKKGINQAYLTGKGSFII 280

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+  EIPY+V+K  +IEK+A L+  K+I  ++D+RDES+     V
Sbjct: 281 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 340

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   +   P++++  ++  +D++  + +NM  L    VP++M L  I   +L H++E+ 
Sbjct: 341 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALV-NGVPKLMNLAQIFNYYLEHQKEIN 399

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            R  +F ++    ++ +L+G+ +A  NIDE+I II++       +  +   ++L   Q  
Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNSGQTK 459

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L  L   ++ +E++ L  E  +I S+++S K+  + I  + + V   F   
Sbjct: 460 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDP 519

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALHF 545
               RR     E+   D+  L           +   V        R      +   A + 
Sbjct: 520 ----RRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMVLDEYRLQNRGGIGTLASNH 575

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
            + D LK     +T   +L++S+  K + L A  +  G   G+   I  LI L  N+ I 
Sbjct: 576 YKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIKLEKNESIS 635

Query: 604 TAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
               ++       L+ VS+ GN      S     T+ GK  LK+   + +        + 
Sbjct: 636 NLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIGLKLVENDYLVSAFIAPNNP 695

Query: 660 --HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             ++ +      +  +SI  + +  R   GV+    ++G      CF   +       + 
Sbjct: 696 DLNILIGSSQGFVNRWSIKLLRDSGRTAIGVKGIKLEEGHKIIGACFAF-DNNFIFSLSK 754

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + + +        L  R   G +      ++G  +
Sbjct: 755 KGFGKKTQVGEYRLTGRTTKGLMSLDA-KKAGNLV 788



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMK 651
           I L     I+ A        +  +S KG     +  E     R  K  + + +++   + 
Sbjct: 729 IKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKKAGNLV 788

Query: 652 LVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +  +  +  A++  +    +   +D +P +SR  KGV++ + K G     +  
Sbjct: 789 FISAIKNNQEAIITTKKGFAIRIDLDMVPIISRRTKGVKIITLKKGDEITAVSL 842



 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 3/125 (2%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           + +  +  +EG  +  A  A   + I  LS  G       G         + +   +D  
Sbjct: 724 IGVKGIKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMS-LDAK 782

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVK 655
              ++V      +  + ++ + KG A  ++     II+   KG   + +   +++  V  
Sbjct: 783 KAGNLVFISAIKNNQEAIITTKKGFAIRIDLDMVPIISRRTKGVKIITLKKGDEITAVSL 842

Query: 656 VTGDH 660
           ++ + 
Sbjct: 843 ISKNE 847


>gi|297584212|ref|YP_003699992.1| DNA topoisomerase IV subunit A [Bacillus selenitireducens MLS10]
 gi|297142669|gb|ADH99426.1| DNA topoisomerase IV, A subunit [Bacillus selenitireducens MLS10]
          Length = 815

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 209/755 (27%), Positives = 385/755 (50%), Gaps = 23/755 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM          F+
Sbjct: 4   KERYLDLPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHMDKNTHDKPFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY++++R +Q +  R+ L+   GN G++DGD  AA RYTE
Sbjct: 64  KSAKTVGNVIGNYHPHGDSSVYEAMIRQSQDWKMRHMLVQMHGNNGSVDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++++  +L+ ++++ VDF   +++   EPVV P  +PNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSKISSEMLKDIEKNTVDFMPNFDDSQEEPVVLPGSYPNLLVNGSTGISSGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +AA+  +D+P+ S+  LL YI GPDFPTGG I++  E + ++Y  G+G   +R
Sbjct: 184 HHLGEVIDAAIHQMDHPDCSVHDLLTYIQGPDFPTGG-IIQGIEGLQKAYESGKGKVVLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  V+ +      I++TEIPY++ K+ L++K+ EL I K++  + ++RD++      ++
Sbjct: 243 GKAEVQAIRGNKEQIIITEIPYEINKANLVKKMDELRIDKKVDGIAEVRDDTDRTGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D   ++  ++  +D++  +     V    + P++M L  +L  ++ H++EV+ 
Sbjct: 303 IELKKEADSQGILHFLYKNTDLQVSYHF-NMVAIHNKTPKLMGLKQMLDAYIQHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR++F +     R  I++GL+ A   +DE+IA IR     K         +  TE Q +A
Sbjct: 362 RRTNFDLNKARDRAHIVEGLIKAISILDEVIATIRASKDKKDAKNRLQASYQFTEPQSEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+NL+L  L   +   ++ E   L    +K++++L S K    +I  E+R +K+ ++   
Sbjct: 422 IVNLQLYRLTNTDITTLEKEAGELRELIKKLEAILESEKNLIKEIKKELRYIKKTYTDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R T  E    D     + ++  E + V ++  G+++     S    +      KE
Sbjct: 481 -----RRTMVEAEVEDLKINLEVVVPSEEVRVSVTKDGYVKRSSIRSYTASNGEEPSMKE 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTA 605
            D L   L  +TTD +L  +  G    +P   L   +     + I  ++ ++ +  I+ A
Sbjct: 536 TDRLIHDLEVNTTDTLLFFTKKGSYLFVPVHQLPETKWKDGGQHIANIVTMDQDDPIIHA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH- 660
                +     LL  +  G        +  A    K  T LK+ +++++  V    G+  
Sbjct: 596 IPVQEFREDRWLLFATKSGMVKRSVLKDYHAQRHSKALTALKLKTDDELINVYLTNGEEN 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
           + +  +    L FS +++     R  GV+  + K+G  ++ +  F   +   ++    R+
Sbjct: 656 LFLATKKGYGLWFSEEEVSVTGQRTAGVKGINLKEGDQLAALSVFNNEQKPDFVLVTQRA 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +           R   G ++ K   ++   +++
Sbjct: 716 AVKRMALKSFEKTTRAKRGVIMLKELKKAPHEVAA 750


>gi|257059255|ref|YP_003137143.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8802]
 gi|256589421|gb|ACV00308.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8802]
          Length = 843

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 238/788 (30%), Positives = 386/788 (48%), Gaps = 48/788 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    +   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLATGQIIPTALHTEMKRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPFRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +A+  +L+ + E  VDF + ++    EPVV P++ P LL NG +GIAVGMA
Sbjct: 126 RYTETRLASIADTGMLRDISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCTGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID+PE+S EKL + I GPDFPTGG I+ ++E I E+Y  GRG
Sbjct: 186 TNIPPHNLGEIVDGLVALIDDPELSDEKLWQLIPGPDFPTGGEII-TQEGIREAYATGRG 244

Query: 249 GFRVRARWCVEEVGRGSWC------IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              VR    +E +  G         IVVTE+PYQV K+  IEK+A+L+   R+  + DIR
Sbjct: 245 IIPVRGITRIETLDVGRKRRRERTAIVVTELPYQVNKAAWIEKMADLVNQGRLEGIADIR 304

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R    +++++S++  + +++ F   +  L   + P  + L  +L+
Sbjct: 305 DESDRTGMRVVIELKRDAKANVVLKSLYKQTALQSNFGAILLALVDNK-PCQLSLRRLLE 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-- 420
           E+L  R + L R+ +  ++    R+ +L GLLIA  N+D II I+RN        +    
Sbjct: 364 EFLRFREQTLTRQYTHELEEAQSRLHLLAGLLIALNNLDAIIDILRNAADGTTAKMRFQA 423

Query: 421 -FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              +++ Q +AIL + +R L  LE+ +++SE   L    E++ +LL+   +    +  ++
Sbjct: 424 ELGISDAQANAILAMPMRRLTGLEQQKLQSEHSELQTRIEELQTLLSDRHELLKTLKKDL 483

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS-------------- 525
           R +K  F         +      S +     ++    K     + +              
Sbjct: 484 RSLKRKFGDPRRTRIVQPPKTPKSSSTPTVKKEESPAKAKKEELPTTSSPKTEESPRKTP 543

Query: 526 -----------NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
                          +               +  DS            +++++  GKAY 
Sbjct: 544 SLTLFTPQPPPENAILEINHQGEASWRLPDGQGQDSSIFRAIIGQKSELMVITDVGKAYP 603

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQD----IVTAFVYDSTC--KLLVVSSKGNAFIVEE 628
           +    +         +  L+     +D    I   FV +      LL+++ +G    V+ 
Sbjct: 604 IAVAEIPPLTLQSIPLLSLLPKGAQKDANRVIDAGFVPNDPHGYDLLLLTQQGRIKRVKM 663

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-G 684
           SE+   T +G   +K+   +++  V     G  V +     ++L + +    IP M R  
Sbjct: 664 SELSDLTNRGLVLIKLKEGDRLGFVCPTQEGQEVVIAISGGRILRYPVTDEVIPLMGRSA 723

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +G +    + G    V C  +      +  +   Y +  +     LGK G +G+   +  
Sbjct: 724 QGNQALKLRYGEEV-VNCVTLHSQGEVLLISSLGYGKRLSLTELRLGKLGDLGTQCLQFT 782

Query: 745 PRSGKFLS 752
            ++ K   
Sbjct: 783 QKTDKLAG 790


>gi|196250914|ref|ZP_03149598.1| DNA topoisomerase IV, A subunit [Geobacillus sp. G11MC16]
 gi|196209555|gb|EDY04330.1| DNA topoisomerase IV, A subunit [Geobacillus sp. G11MC16]
          Length = 814

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 213/757 (28%), Positives = 383/757 (50%), Gaps = 24/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F
Sbjct: 1   MAERLLELPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYVDGNTADKPF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYT
Sbjct: 61  RKAAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSLDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +D++ V F   +++  +EP V P+ FPNLL NG++GI+ G AT IP
Sbjct: 121 EARLSAIAAELLRDIDKETVAFVPNFDDTTNEPTVLPAMFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H + E+ +A L  ID P  +++ L+  + GPDFPTGG I++ ++ I ++Y  GRG   +
Sbjct: 181 PHALGEVIDAVLLRIDRPNCTVDDLMTVLPGPDFPTGG-IIQGKDGIRKAYETGRGKIII 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E+   G   I++TE+PY+V K+ L++KI EL + K++  + D+RDE+  +   +
Sbjct: 240 RAKATIEQAKGGKRHIMITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++  ++  +D++  +     V    R P++M L  +L  ++AHR++V+
Sbjct: 300 VIELKKDADAEAILNYLYKNTDLQVPYSF-NMVAIHERRPKLMSLPELLDAYIAHRKDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
             RS F ++  + R  I++GL+ A   +DE+IA IR     +         +  TE Q +
Sbjct: 359 TNRSHFELKKANERKHIVEGLIKALSILDEVIATIRASSDKRDAKDRLIANYGFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E + L     ++ ++L   K+    I  E++ +K+ ++  
Sbjct: 419 AIVTLQLYRLTNTDITALRQEAEGLDKTIAELTAILADEKKLLAVIKKELKSMKKQYADE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T  E    +     +A+I  E + V ++  G+++     S    +   +  K
Sbjct: 479 ------RRTVIEEEIEELKVNVEALIPAEDVIVTVTKEGYVKRTSYRSYSASNGQDIGMK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D L   L  +TTD +LL +  G     P   L   R       I  LI +  + ++V 
Sbjct: 533 ETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKDVGQHISSLIPIERDDELVA 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
                 +++  +L+ V+  G     E S+       +    + +  ++++  V    G  
Sbjct: 593 VVPVSSFETNEQLVFVTKHGMVKRTELSQYQVQRYTRPLVAVNLKGDDQVIAVYATDGRG 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVIC-FKICEGLTWIDSAGR 717
           +  +   +   L+F+ ++I  +  R  GV+    K+G     +C     E  + I    R
Sbjct: 653 LIWMATHDGYALLFAEEEISLVGVRAAGVKGIQLKEGDFVAAVCPICPEESGSLIVVTQR 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
              +           R   G ++ +    +  + + +
Sbjct: 713 GAVKKMALSEFEPTSRARRGVMIVREVKSNPHRIVGA 749


>gi|85374095|ref|YP_458157.1| DNA gyrase subunit A [Erythrobacter litoralis HTCC2594]
 gi|84787178|gb|ABC63360.1| type IIA topoisomeraseA subunit [Erythrobacter litoralis HTCC2594]
          Length = 931

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 239/830 (28%), Positives = 381/830 (45%), Gaps = 103/830 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           + + + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  E G   G  ++KS
Sbjct: 3   DYERIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASKEGGFVAGRPYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGD ++YD+L R+ Q +  R PLI GQGNFG++D D  A+ RYTEAR
Sbjct: 63  AKIVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +VA  +L  +D+D VDF D Y+    EP V P++FPNLL NG  GIAVGMAT++P HN
Sbjct: 123 LAKVANALLDDLDKDTVDFSDNYDGSLKEPQVLPARFPNLLVNGAGGIAVGMATNVPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA I NP I+ E+L++YI GPDFPT   ++  +     +Y  GRG   +RAR
Sbjct: 183 LGEVIDGCLAFIANPAITSEELMQYIPGPDFPTAP-LILGQAGARAAYTTGRGSVLMRAR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE       IV T IPYQV KS L+EKIA+    KRI  + DIRDES+ +   V+  
Sbjct: 242 HEIEEKRGDRKSIVFTSIPYQVGKSGLVEKIADAAKEKRIEGISDIRDESSREGVRVVVD 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P++++  I+  +  +  FP    +   G  P+V+ L  I++ +++ R EV+ RR
Sbjct: 302 LKRDASPEVVLNQIWRYTPAQASFPA-NMLAIKGGRPEVLTLRDIVQAFVSFREEVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------------- 414
           + F +     R  +L GL++A  N+DE++A+IR    P+                     
Sbjct: 361 TKFELNKARERAHVLLGLVVAVSNLDEVVAMIRGSSNPQIAREKLRAKLWPIGDIAQYIQ 420

Query: 415 ---------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L+E QV AIL+LRL  L  L   +I  EL  L +E E+  S+L
Sbjct: 421 LIEAIEPTADQEGGTYQLSERQVKAILDLRLHRLTALGRDEIGDELKELASEIEEYLSIL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               + +  +  E+ E+K+ ++             E++ A      + +I +E + V ++
Sbjct: 481 ADRGKLFGVLQDELVEIKDEYATPR--------VSEIAPAWDGLEDEDLIAREDMVVTVT 532

Query: 526 NRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + G+I+                 S +  K+ D++       T + +L  +  G+ Y +  
Sbjct: 533 HGGYIKRTPLATFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNLGRVYRMKV 592

Query: 578 GNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
             L  G    +   +  L+ L  ++ +                 ++  + +G        
Sbjct: 593 WKLPEGSPTTKGRPMVNLLPLGDDERVTNVLSLPEDEESWAALNIVFATEQGMVRRNSMD 652

Query: 630 EIIANTRKGKTFLKVSS--EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM-SR-G 684
                   GK  +       +++  V  ++ D  + +  +  K + F+     E  SR G
Sbjct: 653 AFTNVPTGGKYAMGFVEGTGDRLIGVELLSEDQEIFLASDAGKAIRFAATDARETKSRTG 712

Query: 685 KGVRLQSYKDGGISDVICFKI------------------------------------CEG 708
            GVR  + KD      +                                           
Sbjct: 713 IGVRGMTLKDDAKVVSMAVLDRLEQDMETREAYLRAAIWKNNDAEHTLDSDKVAQMEEGE 772

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-----RSGKFLSS 753
              +      Y +  +        RGG G     G P     R+G  ++S
Sbjct: 773 EFILTLTANGYGKISSAYEYRTIGRGGQGLANI-GTPDSNPERNGPVVAS 821



 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 24/122 (19%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-------MKLVVKVT-G 658
           + +    +L +++ G   I    E     R G+    + + +        +     V  G
Sbjct: 768 MEEGEEFILTLTANGYGKISSAYEYRTIGRGGQGLANIGTPDSNPERNGPVVASFPVKHG 827

Query: 659 DHVAVVGENRKLLIFSIDQIPEM--------------SRG-KGVRLQSYKDGGISDVICF 703
             + +V +  KL+   I +   M               R   GVR+     G        
Sbjct: 828 SQLMLVTDQAKLIRMPI-EFRHMVEGGFEEHKGWSVYGRTSSGVRVFDVAKGEHIVGAAI 886

Query: 704 KI 705
             
Sbjct: 887 ID 888


>gi|323498027|ref|ZP_08103035.1| DNA topoisomerase IV subunit A [Vibrio sinaloensis DSM 21326]
 gi|323316903|gb|EGA69906.1| DNA topoisomerase IV subunit A [Vibrio sinaloensis DSM 21326]
          Length = 760

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 273/754 (36%), Positives = 441/754 (58%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  AA+ LIDNP+  +  ++ ++ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVANAAVHLIDNPKSELADVMNFVQGPDYPTEAEIISPKADLEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +TE
Sbjct: 357 EFRRSTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEKLLGSERRLNTLLKKEIQADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L +
Sbjct: 477 YGD-----DRRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +  + +   +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSNQQAVFFGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSAIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ + S++++  R GK  + + +  ++     +     D + 
Sbjct: 591 IMGEEEQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPANSEVMEPKTIADLDSDEIV 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAG 716
            +    ++L+F I  +P++++GKG ++ +           I   +     +    + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEILSHLIAVPKDATLTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R      +DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKPSDLDNFRGERGRRGGLLPRGLQRVTRI 744


>gi|87119249|ref|ZP_01075147.1| DNA topoisomerase IV subunit A [Marinomonas sp. MED121]
 gi|86165640|gb|EAQ66907.1| DNA topoisomerase IV subunit A [Marinomonas sp. MED121]
          Length = 735

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 279/728 (38%), Positives = 438/728 (60%), Gaps = 23/728 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRI++AMSE+GL   A +KKSAR VG+V+GK HPHGD + 
Sbjct: 1   MYVILDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKFHPHGDSAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ ++++L+ V +  VD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSDVLLREVSQGTVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +   ++    EP V P++ PNLL NGT+GIAVGMAT +P HN+ E+  A + L++NP   
Sbjct: 121 WVPNFDGTIKEPSVLPARLPNLLLNGTTGIAVGMATDVPPHNLTEVGNACIHLLNNPNSD 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           ++ L+ ++ GPD+PTGG I   R  I + Y  G+G  + RAR+ +EE       IV+ E+
Sbjct: 181 LDDLMNFVQGPDYPTGGEITTPRNDIKKLYETGKGQIKARARYEMEEGD-----IVIKEL 235

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFM 331
           P+    S+++E+IA  + AK++P++ D+RDES  +   R+VL PK+  +D + +M  +F 
Sbjct: 236 PHYASGSKILEQIAAQMQAKKLPMIVDLRDESDHENPTRLVLVPKSNRVDVEAVMTHLFA 295

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +D+E  + +NMNV+ +  +P V  L   L EWL  R +V+ +R  FR+  +  R+ IL+
Sbjct: 296 STDLERSYRVNMNVIGLDGLPHVKGLKDFLTEWLKFRIDVVRKRLQFRLDKVLNRLHILE 355

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           GLL+A+LNIDE+I IIRNE+KPK  ++ RF LT+ Q +AIL L+LR L KLEE +IK E 
Sbjct: 356 GLLVAFLNIDEVIEIIRNEEKPKVELMLRFGLTDIQAEAILELKLRHLAKLEEMRIKGEQ 415

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  E++++++LL S ++    I+ EI+E  +          RRT   E   + +A  +
Sbjct: 416 DELEKERKQLEALLGSDRKLKKLISEEIQEAVDAHGDE-----RRTPIVERKES-QAFSE 469

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + ++  +P+TVVIS +GWIRS K H VD  AL++K GD   I+    +   ++LL+++G+
Sbjct: 470 EDLLSNDPVTVVISKQGWIRSAKGHDVDPLALNYKSGDEFSISCKGRSNQTLVLLASNGR 529

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +Y++ A  L S RG GE I   I L  +  IV A +       L+ S  G  FI +  ++
Sbjct: 530 SYSIKAHTLPSARGQGEPITGRISLEKDVTIVAAMLNADNTFYLIASDAGYGFIAKLGDL 589

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSRGKGVR 688
            A  + GK  L + +  K+   + V+     H+ V     ++L F  D +P+M++GKG +
Sbjct: 590 HAKNKAGKATLTLPTSAKVLTPISVSDPASSHIVVTSNEGRMLAFKADSLPQMAKGKGNK 649

Query: 689 LQSYKD------GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           + S +             +   + + L    S  R  + ++ DL  +LG+RG  G  +P+
Sbjct: 650 MISIQASRAASHEEYVVAMASVLADDLLQAHSGKRFMSFTQKDLNEYLGERGRRGLKLPR 709

Query: 743 GFPRSGKF 750
           GF R    
Sbjct: 710 GFQRVDAL 717


>gi|163744726|ref|ZP_02152086.1| DNA topoisomerase IV subunit A [Oceanibulbus indolifex HEL-45]
 gi|161381544|gb|EDQ05953.1| DNA topoisomerase IV subunit A [Oceanibulbus indolifex HEL-45]
          Length = 813

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 336/814 (41%), Positives = 459/814 (56%), Gaps = 71/814 (8%)

Query: 6   ISNSNTLV--EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S++ T    + N  +  LR AL ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 1   MSDTTTPPELDPNDLSEPLRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT VAE +L+G++E+AVD+R+ Y+   +EPVV P++FPNLLANG+SGI
Sbjct: 121 DNPAASRYTEARMTAVAEAMLEGLNENAVDYRENYDGTLTEPVVLPAQFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+C+A + LI  P+   E LL Y+ GPDFPTGG+IVE  E+I  +Y
Sbjct: 181 AVGMATNIPPHNIAELCDACIHLIKTPDARDETLLNYVPGPDFPTGGVIVEPPENIANAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+R RW VE++GRG+W IVVTEIPYQVQKS+LIEKIAELI AK+IP+L D+RD
Sbjct: 241 RTGRGSFRLRCRWEVEDLGRGAWQIVVTEIPYQVQKSKLIEKIAELIQAKKIPILADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAEDVR+++ P+++++DP +LM  +F  SD+E RF LNMNVL  G+ P+V  L  +L+ 
Sbjct: 301 ESAEDVRMIIEPRSKNVDPAVLMGMLFRNSDLEVRFSLNMNVLIDGQTPKVCSLKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           +L HRREVL RRS  RM  ID R+E+L+GL+ A+LN+D +I IIR +D PK  ++     
Sbjct: 361 FLDHRREVLQRRSRHRMDKIDHRLEVLQGLITAFLNLDRVIEIIRYDDDPKAALMYEDWS 420

Query: 423 ----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           ++      +  L + +  + +   + +E  +  A         N
Sbjct: 421 RVHQDTLARAMDEAAYISPLAGVDVSKLAVIADAEAQATGVLTESGDTRAVPHSYAGREN 480

Query: 467 --SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
             S  Q    +   +R ++ +   +    R           D    +          +  
Sbjct: 481 GLSDVQAEAILNMRLRSLRRLEEDALVKERDTLMSERAGLEDLLDNEDLQWTTIADQLRA 540

Query: 525 SNRGWIRSL-----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + + +       K      +     E + + I          ++ S  G    +    
Sbjct: 541 TKKQFGKDWVIDGIKRGQRLSTFETAGEVEDVPIEAMIDREPITVVCSQMGWIRAMTGHI 600

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVY------------------------------- 608
            L+     +       + H +      V+                               
Sbjct: 601 DLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSAANLPGGRGMGEPLRLMVDLP 660

Query: 609 -----------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKV 656
                          KLLV SS G+ F+V E E++A TR GK  L V        +   V
Sbjct: 661 NEVQIVSLFIHQPGRKLLVASSAGDGFVVPEDEVVAQTRSGKQVLNVRGDGVAALVCHPV 720

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           +GD VA VGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD   F    GL+W D AG
Sbjct: 721 SGDSVATVGENRKVLVFGLDELPEMGRGKGVRLQKYKDGGLSDATTFTRDAGLSWQDPAG 780

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R   R+E DL  W GKR   G + P+GFPR  KF
Sbjct: 781 R--TRTEADLAEWTGKRASSGRMAPRGFPRDNKF 812


>gi|33152625|ref|NP_873978.1| DNA topoisomerase IV subunit A [Haemophilus ducreyi 35000HP]
 gi|33148849|gb|AAP96367.1| topoisomerase IV subunit A [Haemophilus ducreyi 35000HP]
          Length = 748

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 268/748 (35%), Positives = 434/748 (58%), Gaps = 23/748 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +  +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII++MSE+GL+ 
Sbjct: 2   TKEISYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYSMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT GIAVGM
Sbjct: 122 AMRYTESKLSKMAEILLNELGQGTVDYQPNFDGSLAEPQYLPARLPHILLNGTMGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ EI +A + L++NP  ++ +LL  I GPD+PT   I+  +  IV+ Y  GR
Sbjct: 182 ATDIPPHNINEIAQAGVMLLENPYTTLNELLTVIQGPDYPTEAEIITPKADIVKMYEQGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV+  +P+Q   S++IE+IA  +  K++PL+EDIRDES  
Sbjct: 242 GSIKMRAVWKKEE-----NEIVIYALPHQASPSKIIEQIATQMRNKKLPLVEDIRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIVL P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPIRIVLVPRSNRIDFNGLMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLVTILTEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR S+R+  +  R+ IL GL+ A+LNID++I IIR++D+PK  ++ RF+LT 
Sbjct: 357 HFRRTTVVRRLSYRLDKVLNRLHILNGLMTAFLNIDDVIEIIRHQDEPKAELIERFALTG 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAILNLRLR L KLEE+Q+++E   L  E+ ++  LL S ++  N I  EI++  + 
Sbjct: 417 IQADAILNLRLRHLAKLEEHQLQAEQHQLEHERNELQRLLASDRRLNNLIKQEIQQDAKA 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E + A KA  +  +   E ITV++S +GW+R  K H +D+  L +
Sbjct: 477 FVSP-----RRSPLIERAEA-KAIAESDLTPTEDITVILSEKGWVRCAKGHDIDVQGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD         +   ++ L + G+AYT+    L S R  GE +   I L     I   
Sbjct: 531 RAGDGYLAHTRGRSNQPVVFLDSTGRAYTIDPTTLPSARSQGEPLTSKISLPEGASIQQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VA 662
            + +   K+L+ S  G  FI   +++I+  + GK  + +    K+ +   +       + 
Sbjct: 591 LMANPESKMLMASDAGYGFICTFNDLISRNKAGKAVISLPENAKILVPQWIENSDELSIV 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DSAG 716
            +    ++L+F + ++P +++GKG ++ +      K+G         I    + +  +  
Sbjct: 651 AMSTINRMLVFPLTELPTLTKGKGNKIMNIATQAAKEGKELLARLLLIKSNQSLVFMAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           R       D+  + G+R   G+ + +G 
Sbjct: 711 RKITLKPADIDHYRGERARKGTQLVRGL 738


>gi|254230595|ref|ZP_04923957.1| DNA topoisomerase IV, A subunit [Vibrio sp. Ex25]
 gi|262395285|ref|YP_003287139.1| topoisomerase IV subunit A [Vibrio sp. Ex25]
 gi|151936882|gb|EDN55778.1| DNA topoisomerase IV, A subunit [Vibrio sp. Ex25]
 gi|262338879|gb|ACY52674.1| topoisomerase IV subunit A [Vibrio sp. Ex25]
          Length = 761

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 276/754 (36%), Positives = 447/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNP+  +  +++Y+ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +T+
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGD-----DRRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +    + L +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSNQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     LV S  G  F+ + +++++  R GK  + + +  ++     +     D + 
Sbjct: 591 IMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKAIEDLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++++GKG ++ +      K+          + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLMSLPKGASLTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R      +DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKPSDLDNFRGERGRRGGLLPRGLQRVTRI 744


>gi|240949646|ref|ZP_04753981.1| DNA topoisomerase IV subunit A [Actinobacillus minor NM305]
 gi|240295904|gb|EER46580.1| DNA topoisomerase IV subunit A [Actinobacillus minor NM305]
          Length = 747

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 270/750 (36%), Positives = 446/750 (59%), Gaps = 24/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN   +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSNE-IINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L+  A + K+AR VG+V+GK HPHGD + Y ++V +AQ F  RYPLI GQGN+G+++ D 
Sbjct: 60  LNATAKYAKAARTVGDVLGKFHPHGDSACYGAMVGMAQDFTFRYPLIDGQGNWGSLE-DD 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAAYRYTEAR+T++A ++L  +D+  VDF+  ++    EPV FPS+ P++L NG++GIAV
Sbjct: 119 AAAYRYTEARLTKIAAILLSELDQGTVDFKPNFDGSKVEPVTFPSRLPHILLNGSTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP HN+ EI EA++ L++NP+ ++  LL  + GPD+PT   I+  +  I + Y  
Sbjct: 179 GMATDIPPHNINEIAEASVMLLENPKATLSDLLTVVQGPDYPTEAEIITPKSDIAKIYEQ 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  R+RA W  E+       IV+  +P+Q   S++I +IA+ +  K++P+++DIRDES
Sbjct: 239 GRGSIRMRAVWSKEDGE-----IVIQALPHQASPSKIIAQIADQMRNKKLPMVDDIRDES 293

Query: 306 AEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
             +   RIV+ P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL E
Sbjct: 294 DHENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHDILTE 353

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL+ RR  + RR + ++  I  R+ IL GL+IA+LNIDE+I+IIRNED+PK V+++RF+L
Sbjct: 354 WLSFRRSTVTRRLNDKLDKILNRLHILDGLMIAFLNIDEVISIIRNEDEPKAVLMARFNL 413

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q +AILNLRLR L KLEE+++++E + L +E++++  +L S ++    I  EI+   
Sbjct: 414 SDIQAEAILNLRLRHLAKLEEHELQAEKNQLESERDELRLILGSERRLNTLIKKEIQADA 473

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F+       RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L
Sbjct: 474 KTFADP-----RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVEGL 527

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            ++ GD         +   ++ L + G+AY L   +L S R  GE +   I L     + 
Sbjct: 528 SYRAGDGYLAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGAIVE 587

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--- 660
              +     K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    
Sbjct: 588 QVLMAAPETKVLMASDSGYGFICTFDDLVSRNKAGKAVISLTENAKVLAPQLIDNEEDVS 647

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWIDSA 715
           +  +    ++L+F I ++P +S+GKG ++ +      K+          I    + +  +
Sbjct: 648 LVAMSSAGRMLVFPIAELPILSKGKGNKIINISAQAAKERRELLARLLLIKANQSLVFVS 707

Query: 716 G-RSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           G R      +D+  + G+R   GS + +G 
Sbjct: 708 GKRKITLKPSDIDNYRGERARKGSQLVRGL 737


>gi|282901150|ref|ZP_06309081.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
 gi|281193982|gb|EFA68948.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
          Length = 838

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 247/790 (31%), Positives = 392/790 (49%), Gaps = 54/790 (6%)

Query: 6   ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++    L+    V + +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+
Sbjct: 1   MAEQLNLLNTGQVVSTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHEL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL     ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL+ G GNFG++D D
Sbjct: 61  GLTPDRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDND 120

Query: 125 SAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE R+  +    +L+ + E+ V+F   ++    EP V P++ P LL NG +GI
Sbjct: 121 PPAAMRYTETRLAPIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGCAGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ EI +  +ALID+P+++ EKLLE I GPDFPTGG IV     I E+Y
Sbjct: 181 AVGMATNIPPHNLGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIV-GSGGIKEAY 239

Query: 244 RLGRGGFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             G+GG  +R    +E++     GR    I+VTE+PYQV K+  IEK+A+L+   R+  +
Sbjct: 240 NTGKGGIILRGVVSLEDIVSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLHGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES      V+    R  +P+ ++  ++  + ++T F   +  L     P+ + L 
Sbjct: 300 SDLRDESDRQGMRVVIELKRDANPEEVIGQLYHQTALQTTFGAILLALV-EGQPRQLSLR 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM- 417
            +L+E+L  R + L RR S+ +   + R  I+ GLL A   +DE+I I+R          
Sbjct: 359 QMLQEFLRFREDTLNRRYSYELGKAENRASIVAGLLKALFAVDEVITILRQSPDGSTAKM 418

Query: 418 --VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
               +  LTE Q DAIL + LR L  LE   ++ E D L  +   +  LL   ++    +
Sbjct: 419 VLCQQLDLTETQADAILAMPLRRLTSLERQNLQEEFDQLNEQITSLRRLLEDRRELLKSL 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ----------------QAMIEKEP 519
             ++R +K  +        RRT       A KA                   Q     EP
Sbjct: 479 KKDLRTIKRKYGD-----TRRTKLIPGQIAVKADKVNNQPSSPGEKEKSKISQEEQPPEP 533

Query: 520 ITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
             +  ++RG++R          +     + D L      +T   +L+L+T GK Y    G
Sbjct: 534 AILEFTHRGYVRRLAPGSKKAKAETIMGDNDFLIQTEITNTHQDLLILNTSGKVYPAKVG 593

Query: 579 NLLSGRGHGEAIQLLIDL------NHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEES 629
           ++            LI L       + + I+  F       T  +++V+ +G    +   
Sbjct: 594 DISPISPRSPRGIPLITLLTNTAQGNVEGILGRFTLPETKDTHDMVIVTKQGRIKRISLE 653

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ--IPEMSRGKG 686
           E+   +++G T LKV  ++++        +H + +     + L F+I+   +P M RG  
Sbjct: 654 ELTNVSKRGITILKVKDDDQLCFAQLTNPNHNLILASSGGRCLRFAINDDQLPVMGRGA- 712

Query: 687 VRLQSYKDGGISD----VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 +   I      + C  I +    +      Y +  +      G RG +G+ + K
Sbjct: 713 ---MGLQSFRILKSQQIIGCVAIGQEENLLLVTQEGYAKKISSSSLRAGNRGDLGTQMLK 769

Query: 743 GFPRSGKFLS 752
              ++   ++
Sbjct: 770 FHNKTDNLVA 779



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 77/200 (38%), Gaps = 13/200 (6%)

Query: 517 KEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                V+++ +G I+ +            ++ L  K+ D L  A   +    ++L S+ G
Sbjct: 634 DTHDMVIVTKQGRIKRISLEELTNVSKRGITILKVKDDDQLCFAQLTNPNHNLILASSGG 693

Query: 571 KAYTLPAGNLLSGRGHGEAIQ-LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           +       +         A+      +  +Q I+          LL+V+ +G A  +  S
Sbjct: 694 RCLRFAINDDQLPVMGRGAMGLQSFRILKSQQIIGCVAIGQEENLLLVTQEGYAKKISSS 753

Query: 630 EIIANTRK--GKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
            + A  R   G   LK  +  + +  + +      VA+V    +++  SI+ IP + R  
Sbjct: 754 SLRAGNRGDLGTQMLKFHNKTDNLVAITRTNSSQEVALVTNKDRVIKTSIESIPILDRDA 813

Query: 685 KG-VRLQSYKDGGISDVICF 703
           +G   L   +D  I+ V+  
Sbjct: 814 RGENILPMTRDEIITSVVLV 833


>gi|148979400|ref|ZP_01815506.1| DNA topoisomerase IV subunit A [Vibrionales bacterium SWAT-3]
 gi|145961836|gb|EDK27129.1| DNA topoisomerase IV subunit A [Vibrionales bacterium SWAT-3]
          Length = 752

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 279/757 (36%), Positives = 448/757 (59%), Gaps = 25/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN  T   + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSNEITF--DGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 59  LSAASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 118

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIA
Sbjct: 119 SFAAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGITGIA 178

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+EI +A + LID+P+  + +++E + GPD+PT   I+  +  I + Y+
Sbjct: 179 VGMATDIPPHNVREIADATIKLIDSPKAELSEIMESVQGPDYPTEAEIISPKSDIEKIYK 238

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDE
Sbjct: 239 TGRGSIKMRAVWHKE-----GSDIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDE 293

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  ILK
Sbjct: 294 SDHENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILK 353

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF 
Sbjct: 354 EWIEFRRTTVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +TE Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    I  EI+  
Sbjct: 414 ITEIQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEKLLGSERRLNTLIKKEIQAD 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   
Sbjct: 474 ADKYGD-----DRRSPLVERAEA-KAMTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEG 527

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD    +    +  + + L +DG++Y+L + +L S R  GE I   ++++    I
Sbjct: 528 LNYKSGDKFLASAKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNISAGTSI 587

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     LV S  G  F+ + S++++  + GK  + +    ++     +     +
Sbjct: 588 RQVVMGEDEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQSSEVIAPSPIADLESN 647

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-ID 713
            +  +    ++L+F I  +P++S+GKG ++ +      K+          I E  T  I 
Sbjct: 648 QILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPSAKAKEREEFVSHLMAIPENATLTIY 707

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 708 AGKRKLGLKPADLENFRGERGRRGGLLPRGLQRVTRI 744


>gi|73916124|gb|AAZ92930.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 779

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 228/717 (31%), Positives = 374/717 (52%), Gaps = 29/717 (4%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G
Sbjct: 1   RRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            GNFG++DGDSAAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPN
Sbjct: 61  HGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPN 120

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
           LL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V 
Sbjct: 121 LLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVM 179

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            +  I ++Y  G+G   +R+R  +E    G   IVVTE PY V K+++ E I  L+  KR
Sbjct: 180 GKSGIHKAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKR 239

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  +  +RDES  +    +    R    ++++ ++F ++ M+T F     +     +P++
Sbjct: 240 IEGITAVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKI 298

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           + L  IL  ++ H++EV+ RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   
Sbjct: 299 LSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDA 358

Query: 415 PVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                 +S+F L+E Q  AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++ 
Sbjct: 359 EAQAELMSKFKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERV 418

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I  E+ EVK  FS      +RRT    +     +   + +IE+  + + +SNRG+I+
Sbjct: 419 SQIIKDELDEVKRKFSD-----KRRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIK 471

Query: 532 S--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                     K     +     K+ D ++  +   T D +L  +  G+ Y L    +   
Sbjct: 472 RLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEY 531

Query: 584 RGHGE--AIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRK 637
               +   +  L+ L+ ++ I T    +        L   +  G        E     + 
Sbjct: 532 GRTAKGLPVVNLLKLDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQN 591

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   L +  E+++  V+   GD  + +  +    + F+   +  MSR   GV+  + ++G
Sbjct: 592 GLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 651

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                    I +    +    + Y +           RGG G    K   ++G    
Sbjct: 652 DTVVGASL-ITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 707


>gi|115524770|ref|YP_781681.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53]
 gi|115518717|gb|ABJ06701.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53]
          Length = 918

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 252/748 (33%), Positives = 382/748 (51%), Gaps = 58/748 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D+          +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI+  M E
Sbjct: 7   DDRKPGEPPAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMYE 66

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G ++   ++KSAR VG+VIGK HPHGDQSVYD++VR+AQ F  R PLI GQGNFG++DG
Sbjct: 67  NGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDG 126

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTE+R+T++A+L+L  +D+D VD++D Y+    EP V P+KFPNLL NG  GI
Sbjct: 127 DAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGGI 186

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A +ALI++P +SI+ L + I GPDFPTGGII+  R  I  +Y
Sbjct: 187 AVGMATNIPPHNLGEVIDACVALIEDPALSIDDLSKIIPGPDFPTGGIIL-GRAGIRLAY 245

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +R +  +E   +    I+++EIPYQV K+ ++E+IAEL+  K+I  + D+RD
Sbjct: 246 HTGRGSIVMRGKVSIEPARKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLRD 305

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  D   V+    R    D+++  ++  + ++T F  NM  L     P +M L  +L  
Sbjct: 306 ESDRDGFRVVIELRRDAVADVVLNQLYRFTPLQTNFGANMVALD-AGRPLLMNLKDLLTL 364

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF-- 421
           ++A R +V+ RR+ F +     R  IL GL IA  NIDEII +IR    P     +    
Sbjct: 365 FVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRASPDPATARDTLMSR 424

Query: 422 ---------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                       L+  Q  AIL+LRL+ L  L   +I  ELD L
Sbjct: 425 DWPAQDVAAMITLIDDPRHRLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKL 484

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
             E      +L S  +    I  E+  VK  F+       RRT   E          + +
Sbjct: 485 AVEIADYLEILRSRARVQTIIKDELAAVKAEFATP-----RRTEIIEQEGE---VEDEDL 536

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V +S+ G+++          +      + +  +E D +     A T   +L  
Sbjct: 537 IQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRAGMATREEDFVSRLFVASTHTPVLFF 596

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVS 618
           S+ G+ Y      L      G G+A+  ++ L   + I T               ++  +
Sbjct: 597 SSRGQVYKEKVWRLPLAPPNGRGKALINILPLEQGERINTIMPLPEDESSWAEFDVMFAT 656

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           ++G     + S+ +   R G   +K+   E +  V   T  D V +     + + F++  
Sbjct: 657 TRGTVRRNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTDRDDVLLTAAEGQCIRFAVTD 716

Query: 678 IPE-MSRGK-GVRLQSYKDGGISDVICF 703
           +    SR   GVR  +  +G     +  
Sbjct: 717 VRVFQSRASMGVRGMALANGDQVISLTI 744



 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 17/48 (35%)

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +  +   + +  +        RGG G +      R+GK ++S
Sbjct: 806 ANEQFVLTISENGFGKRTSSFEYRTTGRGGKGIVAMSVNARNGKLVAS 853



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVG 665
           +   +L +S  G        E     R GK  + +S   +   +     V   D + +V 
Sbjct: 807 NEQFVLTISENGFGKRTSSFEYRTTGRGGKGIVAMSVNARNGKLVASFPVEEEDQIMLVT 866

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +  +L+   +  I  + R  +GV + +  +      +
Sbjct: 867 DKGQLIRCPVGGIRIVGRSTQGVTVFNTAEDEHVVSV 903



 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 1/91 (1%)

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                V  + EN      S  +     R GKG+   S        V  F + E    +  
Sbjct: 806 ANEQFVLTISENGFGKRTSSFEYRTTGRGGKGIVAMSVNARNGKLVASFPVEEEDQIMLV 865

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +            +  R   G  V     
Sbjct: 866 TDKGQLIRCPVGGIRIVGRSTQGVTVFNTAE 896



 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 10/37 (27%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I      +  +   Y +          +RGG G    
Sbjct: 537 IQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRAGM 573


>gi|93006981|ref|YP_581418.1| DNA topoisomerase IV subunit A [Psychrobacter cryohalolentis K5]
 gi|92394659|gb|ABE75934.1| DNA topoisomerase IV subunit A [Psychrobacter cryohalolentis K5]
          Length = 771

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 276/768 (35%), Positives = 440/768 (57%), Gaps = 34/768 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +DN  +   L  E +   S+    E+ YL YA+  I +RA+P++ DG KPV RRI++AMS
Sbjct: 5   IDNTLD-PILANEPMDTRSVAEFAEQAYLNYAMYVIMDRALPNIADGLKPVQRRIVYAMS 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G+ D
Sbjct: 64  ELGLKSTAKAKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPD 123

Query: 123 G-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
              S AA RYTEA+M+  A  +L  + +  VD++D ++    EP   P++ PN+L NGT+
Sbjct: 124 DPKSFAAMRYTEAKMSAYANTLLAELGQGTVDWQDNFDGTMLEPTTLPARLPNILLNGTT 183

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IP HN+ E+  AA+ L+ NPE+S+++L + I  PD PT   I+ S++ +  
Sbjct: 184 GIAVGMATDIPPHNLNEVVRAAIRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQA 243

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            Y  GRG +++RA + ++   +    +++  +PYQV  +++ E+IA+L+  K++P + DI
Sbjct: 244 IYETGRGSYKMRATFHIDPKEKNL--VIINALPYQVSGNKIQEQIAKLMTDKKLPWIVDI 301

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES  +   RIVL  K+  +D   +M  +F  +D+E+ + +NMN++ +   PQV  L  
Sbjct: 302 HDESDHENACRIVLELKSTRVDVQRVMSHLFASTDLESNYRVNMNMIGLNGKPQVKNLKE 361

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL+EWL  RR V+ RR  +R+  ID+R+ IL GLLIAYLNIDE+I IIR ED PK  ++ 
Sbjct: 362 ILEEWLVCRRSVVTRRLQYRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPKLSLMQ 421

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            + LTE Q +AIL++RLR L KLEE +++ E D L AE+  I   L++     N +  E+
Sbjct: 422 DYDLTEIQANAILDIRLRQLAKLEEIELRREQDELAAERAIIQEYLDNPDSLTNLMIDEL 481

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  +   + G  R +        +A  +  ++  EP+T ++S  GWIR+ K H VD
Sbjct: 482 T------ADMKEHGNERVSQLAEREEAQALKESDLVPSEPVTAILSKAGWIRAAKGHDVD 535

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            + + ++ GDS +  + A   ++I +L + G++Y++ A +L S RG G+ +  ++     
Sbjct: 536 AAGMAYRSGDSYQAHVRAKANEKIYVLDSTGRSYSIDAHSLASARGQGDPLTSVLKPPAG 595

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
                    D+  ++++ SS+G  FI     + +N + GK  + ++++ ++  + ++   
Sbjct: 596 ATFEQLLTGDNDQRIILASSQGYGFINTIGNLDSNQKAGKNIINLAADSRLLPIARIDAQ 655

Query: 659 ---------------------DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI 697
                                DH+AVV     LLIF++D +PE +RGKG ++ + K    
Sbjct: 656 TEVIVSSENNGIPASENSSTLDHIAVVTNAGYLLIFALDDLPEQARGKGNKMINLKGDEE 715

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              I          I +  R       DL  +  KRG  G  +P+GF 
Sbjct: 716 VLTITPLSKHDSLVITAGKRHVTLKPMDLANYTSKRGSRGGQLPRGFQ 763


>gi|319897149|ref|YP_004135344.1| DNA topoisomerase iv, subunit a [Haemophilus influenzae F3031]
 gi|317432653|emb|CBY81016.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae F3031]
          Length = 744

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 269/749 (35%), Positives = 430/749 (57%), Gaps = 25/749 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +A + L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 182 TDIPPHNINEIADATVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+L++ 
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + +
Sbjct: 417 QADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E   A   +         P+TV++S  GW+R  K H +D  +L +K
Sbjct: 477 ASP-----RMSQLVEREEAKMISESD----MTPVTVILSEMGWVRCAKGHDIDPKSLSYK 527

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+        +   ++ + + G++Y L   +L S R  GE +   ++L     I    
Sbjct: 528 AGDNYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVV 587

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      V  +
Sbjct: 588 MASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAI 647

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIF    +P +S+GKG ++ +      KD          I +  +    S  R 
Sbjct: 648 TSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRK 707

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  +  +RG  GS +P+G   +
Sbjct: 708 IVLKPEDLQKFRAERGRKGSTLPRGLHTN 736


>gi|224110064|ref|XP_002315402.1| predicted protein [Populus trichocarpa]
 gi|222864442|gb|EEF01573.1| predicted protein [Populus trichocarpa]
          Length = 932

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 239/763 (31%), Positives = 384/763 (50%), Gaps = 35/763 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L     E Y+AYA+S +  RA+PD+RDG KPVHRRI+ AM E+GL     FKK 
Sbjct: 82  RVVQTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSKKPFKKC 141

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE R
Sbjct: 142 ARVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECR 201

Query: 136 MTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +  + E + L  +++D VDF   ++    EP +FP++ P LL NG+SGIAVGMAT IP H
Sbjct: 202 LDGLTEAVFLADLEQDTVDFVPNFDNSQKEPSLFPTRLPTLLLNGSSGIAVGMATKIPPH 261

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   ALI NPE ++++LLEY+ GPDFPTGG I+   + I+++YR G+G   VR 
Sbjct: 262 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGG-IIMGNQGILDAYRSGQGRIVVRG 320

Query: 255 RWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           +  VE  +       +++ EIPYQ  K+ L+EKIAEL+  K +  + DIRDES      +
Sbjct: 321 KTDVELLDSKTKRNAVIIKEIPYQTNKASLVEKIAELVEDKNLDGISDIRDESDRSGMRI 380

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP +++ +++ L+ +++ F  NM  +     P+ M L  +L+ +L  R  V+
Sbjct: 381 VIELKRGADPSIVLNNLYRLTPLQSSFSCNMVGILD-GQPKQMGLKELLQAFLDFRCSVV 439

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ F++    +R  I++G++    N+D ++ IIR           + + FSL+E Q +
Sbjct: 440 ERRAMFKLSEAQKRRHIVEGVMAGLDNLDRVVDIIRKASSNAIASADLRNEFSLSEKQAE 499

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++ LR L  LE  +   E  +L+ +  K++ LL+S       I  E  E+K  FS  
Sbjct: 500 AILDISLRRLTLLEGKKFVEESKSLMEQITKLEELLSSRGNILQLIEQEAVELKNKFSNP 559

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKEG 548
                  +   ++   D    ++ ++       V              ++  S    ++ 
Sbjct: 560 RRSMLEDSDSGQLEDIDVIPNEEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRDS 619

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAF 606
           D++   +  H  DR+L  S  G  Y+ PA  +        G  +   + L+  + I +  
Sbjct: 620 DAMSDFIVCHAHDRVLYFSDQGIVYSAPAYKIPECTRAAAGTPLIQFLSLSDGERITSII 679

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVA 662
               +     LL+++  G    V  +   A    G   +++   +++K V   T GD VA
Sbjct: 680 PVSEFVEDQFLLMLTVNGYIKKVSLNSFSAIRSTGIIAIQLVPGDELKWVRCCTNGDLVA 739

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS---DVICFKICEGLTW------- 711
           +  +N  +++ S + I  + R  +G      ++G      D+I   + + L         
Sbjct: 740 MASQNGMVILTSCENIRALGRNTRGGVAMRLREGDKIASMDIIPASLQKDLEVASKDSEN 799

Query: 712 ---------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                    +  +   + +          +   VG +  K F 
Sbjct: 800 NNKGTGPWLLFVSESGHGKRVPLSSFKQSRLNRVGLIGYKFFE 842



 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 12/110 (10%)

Query: 614 LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVA 662
           LL VS  G+   V  S        R G    K   E+ +  V  V         + + V 
Sbjct: 808 LLFVSESGHGKRVPLSSFKQSRLNRVGLIGYKFFEEDHLAAVFAVGFSLTEDGESDEQVV 867

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           +V ++  +    +  I   SR  +GV L   +  G               
Sbjct: 868 LVSQSGTVNRIKVRDISIQSRFARGVILMRLEHAGKIQSTSLISAADPEL 917


>gi|311068377|ref|YP_003973300.1| DNA topoisomerase IV subunit A [Bacillus atrophaeus 1942]
 gi|310868894|gb|ADP32369.1| DNA topoisomerase IV subunit A [Bacillus atrophaeus 1942]
          Length = 806

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 217/748 (29%), Positives = 383/748 (51%), Gaps = 23/748 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+
Sbjct: 4   PEIFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHAEGNTSDKNFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSPIASELLRDIDKNTVEFVSNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +A +  ID+P+ ++ +L+E I GPDFPTGG I++  + I ++Y  G+G   VR
Sbjct: 184 HHLGEVIDAVIKRIDSPDCTVTELMEVIKGPDFPTGG-IIQGVDGIRKAYETGKGKVIVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  VE +  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+
Sbjct: 243 GKAEVETIRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D   ++  ++  +D++  +     V    R P +M L  IL  ++AH++EV+ 
Sbjct: 303 IELKKEADAKGILNFLYKNTDLQITYNF-NMVAIHNRRPMLMSLTAILDAYIAHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
            RS + +Q    R  I++GL+ A   +DE+IA IR+ +  +    +   +F  TE Q +A
Sbjct: 362 NRSIYELQKAKDRHHIVEGLMKALSILDEVIATIRSSNDKRDAKNNLISKFEFTEPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +   +K E + L    ++++S+LN+ K+    I   ++++K+ ++   
Sbjct: 422 IVSLQLYRLTNTDITALKEEAEELSKNIQELESILNNDKKLLKVITSSLKKLKKTYADG- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R +  E    +     + M+  E + V ++  G+++     S    +      K+
Sbjct: 481 -----RRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D L      +TTD +L+ +  G     P   L   R          +I ++ ++ IV A
Sbjct: 536 TDRLLHQFEMNTTDVLLMFTNKGSYIYCPVHQLPDIRWKDMGQHFTNMISIDRDETIVKA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-H 660
                +D +  LL  +  G     E +   A    K    L V  ++++  V    G+  
Sbjct: 596 IPIKEFDPSAYLLFFTKNGMVKKTELTHYKAQRYSKALVALNVKGDDELTDVHVTNGESQ 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +       L F  D++  +  R  GV+  + K+G    V    + E  + + +  R  
Sbjct: 656 LFIATHLGYGLWFGEDEVNVVGARAAGVKGINLKEGDFV-VSGQILHEADSLVLATQRGA 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            +  +        R   G ++ +   ++
Sbjct: 715 VKRMSLSEFDKTSRAKRGVIMLRELKKN 742


>gi|254448121|ref|ZP_05061584.1| DNA topoisomerase IV, A subunit [gamma proteobacterium HTCC5015]
 gi|198262247|gb|EDY86529.1| DNA topoisomerase IV, A subunit [gamma proteobacterium HTCC5015]
          Length = 750

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 251/751 (33%), Positives = 426/751 (56%), Gaps = 25/751 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            +++   ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   +  KK
Sbjct: 6   NDIETQPIKDFTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIIYAMSELGLSASSKHKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           +AR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RYTE
Sbjct: 66  AARTVGDVLGKYHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGSPDDPKSFAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++   + L+L  + +  VD++  ++   +EPVV P++ PN+L NGT+GIAVGMAT IP 
Sbjct: 126 AKLRPYSRLMLHELGQGTVDWQPNFDGTMNEPVVLPARVPNVLLNGTTGIAVGMATDIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A +AL+DN  +S+E+L+ YI  PD+PT   +V  +  I + Y  G G  R+R
Sbjct: 186 HNLREVASACIALLDNSRLSVEELMAYIPAPDYPTDAEVVTPKSDIQKMYETGNGSIRMR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A++ VEE       +V+T +P+Q   ++++E+IA+ +  K++P+++D+RDES  +  I  
Sbjct: 246 AKYTVEEGD-----VVITALPHQTYGAKVMEQIAQQMRDKKLPMVDDLRDESDHENPIRF 300

Query: 314 F--PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
              P++  ++ D LM  +F  +D+E  + +NMNV+ +   P+V  L  IL EWL  R + 
Sbjct: 301 VISPRSNRVNIDELMSHLFATTDLERNYRVNMNVIGLDGRPRVRNLREILVEWLKFRIQT 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +++R+ IL+GLL+AYLN+DE+I IIR ED+PK V++  F L++ Q +AI
Sbjct: 361 VTRRLQWRLDKVEKRLHILEGLLVAYLNLDEVIRIIRTEDEPKAVLMKAFKLSDEQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L  +LR L KLEE +I+ E ++L  E++ +   L S ++    I  E++   + +     
Sbjct: 421 LETKLRHLAKLEEMKIRGEQEDLERERDDLQKTLGSKQRLKTLIKKELKADAQDYGD--- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A +   + A++  EP T+VIS +GW+R+ K H +    L++K GD  
Sbjct: 478 --DRRSPLVEREAA-QQMDETALVPSEPTTIVISEKGWVRAGKGHDLKPEELNYKAGDGY 534

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           +      T  + + + ++G+ YTL A +  S R  GE +   + +    + V        
Sbjct: 535 QHHALGRTNQQAVFIDSNGRTYTLVAHSFPSARSFGEPLTGKLKVKDGAEFVGVMAGKPQ 594

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENR 668
              L+ +  G  ++ +  +++   + GK  L V    K+   V V     D +  V E  
Sbjct: 595 DLYLLATDAGYGYVAKLEDMMTRNKAGKAMLSVPKGAKVLPPVPVRSYEQDWLVGVTEQG 654

Query: 669 KLLIFSIDQIPEMSRGKGVR--LQ-----SYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
              +  +D++P++ +GKGV+           ++  ++ V   +  E  T      +    
Sbjct: 655 YCGVIKLDELPQLPKGKGVKMLGIPPAKFKTREEFLAYVTLVQDGEAFTVFC-GKKHKTL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             ++   +  +RG  G  +P+G+       +
Sbjct: 714 KSSEQDDYTIERGKRGVKLPRGYQNVDALSA 744


>gi|225465333|ref|XP_002271674.1| PREDICTED: similar to DNA gyrase subunit A,
           chloroplastic/mitochondrial [Vitis vinifera]
          Length = 911

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 235/765 (30%), Positives = 379/765 (49%), Gaps = 36/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  +    L     E Y+AYA+S +  RA+PD+RDG KPVHRRI+ AM E+GL     +K
Sbjct: 63  DGRIVPTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPYK 122

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYDSLVR+AQ F  R PLI G GNFG++D D  AA RYTE
Sbjct: 123 KCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTE 182

Query: 134 ARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  + E + L  +++D VDF   ++    EP + P++ P LL NG+SGIAVGMAT+IP
Sbjct: 183 CRLEALTEAMLLADLEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIP 242

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +    LI NPE ++++LLEY+ GPDFPTGG ++     I+E+YR GRG   V
Sbjct: 243 PHNIGELVDVLCVLIRNPEATLQELLEYMPGPDFPTGG-LIMGNIGILEAYRTGRGRIIV 301

Query: 253 RARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R +  VE  +       +++ EIPYQ  KS L+EKIAEL+  K +  + DIRDES     
Sbjct: 302 RGKTEVELLDSKTKRTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRDESDRSGM 361

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  DP +++  ++ L+ +++ F  NM  +     P++M L  +L+ +L  R  
Sbjct: 362 RIVIELKRGSDPSIVLNKLYRLTALQSSFSCNMIGILD-GQPKLMGLKELLQAFLDFRCS 420

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F++     R  I++G+++   N+D +I +I+           + + F L+E Q
Sbjct: 421 VVERRARFKLSQAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMASTGLRNEFGLSERQ 480

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL++ LR + +LE  +  +E  +L+ +  K+  LL+S KQ    I  E  E+K  FS
Sbjct: 481 AEAILDISLRRITRLEREKFVTESKSLMEQISKLQELLSSRKQILQLIEQEAIELKNRFS 540

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFK 546
                    T   ++   D    ++ ++       V              ++  S    +
Sbjct: 541 TPRRSMLEDTDSGQLEDVDVIPNEEMLLAVSEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 600

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
             D++   +  H  D +L  S  G  ++  A  +        G  +  ++ L+  + I +
Sbjct: 601 VNDAMSDFIVCHAHDYVLYFSDRGIVHSARAYKIPECTRTAAGTPLVQILCLSDGERITS 660

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                 +     LL+++  G    V  +   +    G   +++   +++K V   T D  
Sbjct: 661 IIPVSEFAEDQFLLMLTMNGYIKKVSLNFFSSIRSTGIIAIQLVPGDELKWVRCCTNDDL 720

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI---SDVICFKICEGLT------ 710
           VA+  +N  +++ S + I  + R  +G      K G      D+I   I + L       
Sbjct: 721 VAMASQNGMVILSSCEIIRALGRNTRGSIAMRLKQGDKMASMDIIPAAIRKDLEKALEDR 780

Query: 711 -----------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                       +  +     +        L     VG +  K  
Sbjct: 781 QSRARNLNGPWLLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFS 825



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 13/110 (11%)

Query: 614 LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVA 662
           LL VS  G    V  S        R G    K S+E+ +  V  V         + + V 
Sbjct: 792 LLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFSAEDHLAAVFVVGFSLTEDGESDEQVV 851

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLT 710
           +V ++  +    +  I   SR  +GV L   +  G I         E  T
Sbjct: 852 LVSQSGTINRIKVWDISIQSRFARGVILMRLEYAGKIQSASLMSATETET 901


>gi|220932012|ref|YP_002508920.1| DNA gyrase subunit A [Halothermothrix orenii H 168]
 gi|219993322|gb|ACL69925.1| DNA gyrase subunit A [Halothermothrix orenii H 168]
          Length = 796

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 236/739 (31%), Positives = 387/739 (52%), Gaps = 27/739 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++++++   +++ YL+Y+LS I  RA+PD+RDG KPVHRRI++A  E+GL      
Sbjct: 1   MAEKIRSIAIEDKMKDSYLSYSLSVIASRALPDVRDGLKPVHRRILYAARELGLTHDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD SVYD++VR+AQ F QRY LI G GNFG+IDGDS AA RYT
Sbjct: 61  KKSARIVGEVLGKYHPHGDASVYDAMVRMAQYFNQRYCLIDGHGNFGSIDGDSPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++AE I+  + +D VDF D ++    EP + P+K PNLL NG SGIAVGM+TSIP
Sbjct: 121 EARLTELAEDIMADITQDTVDFVDNFDGSLQEPEILPTKVPNLLINGASGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P   +E +++YI GPDFPTG  IV     I ++Y+ G G   +
Sbjct: 181 PHNLGEVVDAMVHLLKHPNAKLETIMKYIPGPDFPTGAKIV-GLSGIKKAYKTGNGKITL 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR  + E       I++ EIPY + K +L+E IAELI   +I  + D+RDES ++   +
Sbjct: 240 RARTQI-EKKGRKKQIIIKEIPYHLNKVKLLEDIAELINKGKIDNVSDLRDESDQEGLRI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +       DPD+++  ++  + ++T + +NM  L  G+ P+VM L  ILK ++  RR+V+
Sbjct: 299 VVELKSGADPDIILNQLYKFTSLQTNYRINMLALD-GKQPRVMDLITILKNFINFRRQVI 357

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ +++     R  +L+GL+ A   +D +I+IIR+    K        +  +TE Q +
Sbjct: 358 TRRTKYKLNKAKERFHLLQGLITAIDKLDLVISIIRHSKSTKEARQKLQEKLVITEKQAE 417

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RL+ L  +EE ++  E   L  + +    +LN+  +    +  E+ ++K  ++  
Sbjct: 418 AILRMRLQKLVGMEEEKLHQESAGLEEQIKYYKKILNNKNELDKVLKKELLDIKNKYAD- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
               +R+T   E         +  +I+KE + +  S R  I+   S           + D
Sbjct: 477 ----KRKTEIIE-DEEKAIIEKTDLIKKEKVFLTFSYRQNIKRTTSSEY----ARAGKND 527

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV 607
            +   +   T D +L  +  G  YTLP   +    G      I+  + +  ++ IV    
Sbjct: 528 YIIDTMTGTTLDTLLFFTNTGDVYTLPVHKIPEHHGLSTGDNIKDFLKIPLSKKIVKVIC 587

Query: 608 YDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAV 663
            +       + + + +G        E      +    +K++  +++  V    G+  + +
Sbjct: 588 LNEETKEKYITIATKQGMVKKTIGGEYQTTYSR-IKAIKLNKGDEVVGVEITDGNQEILL 646

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRSYNR 721
             +  K + F  D + +  R   G        G   +V+ F  +    + +  +     +
Sbjct: 647 GTKKAKTIRFEEDSVSDTGRNTIGSIGIKLAKGD--EVVSFNLVNNNTSVVSISKTGRGK 704

Query: 722 SENDLLGWLGKRGGVGSLV 740
                      R G G   
Sbjct: 705 RSPIEEYNPQNRNGKGLKT 723


>gi|300114693|ref|YP_003761268.1| DNA topoisomerase IV subunit A [Nitrosococcus watsonii C-113]
 gi|299540630|gb|ADJ28947.1| DNA topoisomerase IV, A subunit [Nitrosococcus watsonii C-113]
          Length = 747

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 281/748 (37%), Positives = 438/748 (58%), Gaps = 23/748 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++   L    E+ YL Y++  I +RA+P L DG KPV RRII+AMSE+GL   A +KKS
Sbjct: 8   DIEERPLGEFAEKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGLSASAKYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI+GQGN+G+ D   S AA RYTEA
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQQFSYRYPLIAGQGNWGSPDDPKSFAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   AEL+L  V +  V++   ++    EP + P++ P++L NGT GIAVGMAT IP H
Sbjct: 128 RLAPFAELLLAEVGQGTVNWTPNFDGTLQEPRLLPARVPHVLLNGTMGIAVGMATDIPPH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A L L+  P  ++ +L EY+ GPD+PT   I+    ++V+ Y  G+G  R+RA
Sbjct: 188 NLHEVAAACLHLLQCPNATVAELCEYLPGPDYPTEAEIITPSAALVKMYETGQGSVRLRA 247

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIV 312
           R+ VE+       IVV  +P+QV  +R++E+IA+ + AK++P+L D+RDES  +   R+V
Sbjct: 248 RYRVEQGN-----IVVNALPHQVSGARVLEQIAQQMQAKKLPMLADLRDESDHENPTRLV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L P  R ++ + +M  +F  +D+E  + +N NV+ +   PQV  L  +L EW   R   L
Sbjct: 303 LVPHARRIEVETVMSHLFATTDLERSYRVNFNVIGLDGRPQVKNLRDLLGEWFHFRIGTL 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR  +R++ ++ R+++L GLLIAYLNIDE++AIIRNE+ PKPV+++RF L++ Q +AIL
Sbjct: 363 RRRFQYRLEKVEDRLQVLAGLLIAYLNIDEVVAIIRNEEVPKPVLIARFKLSDRQAEAIL 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+LR L +LEE +I++E   L AE+++++ +L S  +  + +  E+    E F  +   
Sbjct: 423 ELKLRYLARLEETKIQAENKALAAERKRLEKMLGSESRIKDLLRQELLADTEKFGDA--- 479

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RR+   E   A  A  QQ+++  E ITVV+S +GW+R+ KS  V+ +AL ++ GDS +
Sbjct: 480 --RRSPIVERPSA-TALDQQSLLPAELITVVLSEKGWVRAAKSQDVNPAALSYRTGDSYR 536

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            +    +    + L + G++YTLPA  L S RG GE +   + +    + V   + +   
Sbjct: 537 ASARGRSNQPAVFLDSTGRSYTLPAHGLPSARGQGEPLSGHLQVAPGAEFVAILLAEPEE 596

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRK 669
             L+ S+ G  F+ +   +    R GK  L VS+  K    V V     D VAV     +
Sbjct: 597 FYLMASNMGYGFLCQARHLYTKNRAGKAVLNVSAGAKALPPVPVVDRELDQVAVATNVGR 656

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAGRSYNRSE 723
           LL+F +  +P ++RGKGV+L +               +      G   + +  R      
Sbjct: 657 LLLFPLRDLPFIARGKGVKLINISSTRFAQGQEAVRALAVISQGGALQVFAGRRHLTLKS 716

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            DL  + G+R   G  +P+GF +  + +
Sbjct: 717 EDLEPYQGERARRGLTLPRGFQQVERMV 744


>gi|331007253|ref|ZP_08330459.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC1989]
 gi|330418941|gb|EGG93401.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC1989]
          Length = 749

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 275/759 (36%), Positives = 435/759 (57%), Gaps = 26/759 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E + + +SL+   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+G
Sbjct: 1   MSNIVKPPESD-ETISLKDYAEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+VIGK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   
Sbjct: 60  LKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T  +E++L  + +  V++   ++    EP V P++ PN+L NGT+GIA
Sbjct: 120 SFAAMRYTESRLTAYSEVLLSELGQGTVEWAPNFDGTIDEPKVLPAQVPNILLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  A + L+ NP+ ++ +L+E+++ PD PT   I+ S + I   Y 
Sbjct: 180 VGMATDIPPHNLREVVSACIHLLSNPKATVTELMEFVLAPDMPTDAEIITSPKDIQTMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+R  W  E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 240 TGRGSLRMRCIWGQEDGD-----IVVTSLPHQVSGAKILEQIAAQMQAKKLPMVADLRDE 294

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +NMN++ +  +P V PL+ IL 
Sbjct: 295 SDHENPTRLVIIPRSNRIDVEQLMSHLFASTDLERTYRINMNMIGIDGLPAVKPLNVILT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ R   + RR  +R+  + +R+ IL+G L A+LNIDE+I IIR EDKPK V++ RF 
Sbjct: 355 EWLSFRMVTVRRRLQYRLDKVLKRLHILEGYLAAFLNIDEVIHIIRTEDKPKQVLMDRFG 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +T+ Q +AIL L+LR + KLEE +I+ E D L  E E ++ +L S  +  N +  E++ +
Sbjct: 415 VTDIQAEAILELKLRQIAKLEEIKIRGEQDELAKEGEWLEGILASATKLKNLVKKELQAI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+       A   +     +  +PITVV+S +GWIRS K H VD +A
Sbjct: 475 AEKYGN-----DRRSPIVVRGEAQALSEMDL-LTSDPITVVLSEKGWIRSAKGHDVDPAA 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+   +    T    LL+ + G++Y L +  L S RG GE     ++       
Sbjct: 529 LSYKAGDAYMFSAKGKTNQNALLIDSTGRSYALASHTLPSSRGQGEPASGRLNPPSGAVF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               +     ++L+ S  G  F+ E   +    + GK  L +    ++     +      
Sbjct: 589 TGLLMGVEKQRVLIASDAGYGFVTELGNLYTKNKAGKALLTLPKGARVLPPFMIDDVADA 648

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
           +VA      +LLIF +  +PE++RGKG ++ S        ++  +  +      + LT  
Sbjct: 649 YVAAASNEGRLLIFPLSDLPELARGKGNKMLSIPGARVEAREEFVVSIAVIHSKQKLTV- 707

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            S  R       DL  + G+RG  G  +P+GF +     
Sbjct: 708 YSGKRHTTFKMADLEHYKGERGRRGHKLPRGFQKVDSIA 746


>gi|285018777|ref|YP_003376488.1| DNA topoisomerase iv subunit a protein [Xanthomonas albilineans GPE
           PC73]
 gi|283473995|emb|CBA16496.1| probable dna topoisomerase iv subunit a protein [Xanthomonas
           albilineans]
          Length = 747

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 279/756 (36%), Positives = 435/756 (57%), Gaps = 21/756 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++    V    + + LR   E  YL Y++  + +RA+P L DG KPV RRI++AMSE+G
Sbjct: 1   MTDLPRPVFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +  VD+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTVDWSPNFDGTMDEPTWMPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A + L+D+P+ SI  L E++ GPD+P+   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALIRLLDDPDASISDLCEHVRGPDYPSTAEIITPIADLRTIYA 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E        IVVT +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATYEKENAN-----IVVTALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F  +D+E  + +N+NV+ +   PQV  L  +L+
Sbjct: 296 SDHANPVRVVLVPRSNRVDAEHLMGHLFATTDLERSYRINLNVIGLDGRPQVKNLKTLLE 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR + R++ ++RR+ +L+GLL+A+LN+DE+I IIR+ED+PKP +++RF+
Sbjct: 356 EWLRFRSDTVVRRLNHRLEKVERRLHLLEGLLVAFLNLDEVIRIIRSEDEPKPALIARFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL  RLR L +LEE +I+ E D L  E+E++ ++L S  +    I  E+   
Sbjct: 416 LSEEQTDYILETRLRQLARLEEMKIRGEQDALAKEREQLQAVLASKTKLKKLIKDELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   +   A      +  +  EP+T+V+S +GWIR+ KSH VD + 
Sbjct: 476 AKKFGDA-----RRSPLVQREAAQAIDETEL-VPSEPMTIVMSEKGWIRAAKSHDVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +++GDSL  A+   +T ++  L ++G+AY+  A  L S RG+GE +            
Sbjct: 530 LAYRDGDSLLAAVRGRSTQQVAFLDSEGRAYSTLAHTLPSARGNGEPLTGRFSPAAGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
                 ++  ++++ SS G  FI     + +  + GK  L ++   K+     V     D
Sbjct: 590 QALATGENDTRVVLASSHGYGFITRFENLTSRNKAGKAMLNLTPNAKVLAPATVGNADTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI----SDVICFKICEGLTWIDSA 715
            +  V     LL F +  +PE+ +GKG ++       +       I          + S 
Sbjct: 650 RIVAVTSAGHLLAFPVADLPELDKGKGNKIIDIPKAKLGTERVVAIAAVTPGNTLLVKSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            R+ + S  DL  +LG R   G L+P+G+ +  +  
Sbjct: 710 QRTMSLSFKDLDAYLGARASRGGLLPRGWQKVDELA 745


>gi|9623018|gb|AAF90006.1|AF227958_1 DNA topoisomerase IV subunit [Serratia marcescens]
          Length = 756

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 273/756 (36%), Positives = 442/756 (58%), Gaps = 26/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  + V+ + L    E  YL Y++  I + A+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSD---LTHDGVERLPLHTFTENAYLNYSMYVIMDPALPYIGDGLKPVQRRIIYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LTNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLAELGQGTVDWIPNFDGTLQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  AA+AL+D P  S++ LLE++ GPDFPT   I+  R+ I + Y+
Sbjct: 178 VGMATDIPPHNVREVAAAAVALLDKPGASLDDLLEFVQGPDFPTEAEIITPRDEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA    E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 SGRGSVRMRAVGKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRSNRIDLEQVMNHLFATTDLERSYRINMNMIGLDNTPAVKGLVEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA+RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++ RF 
Sbjct: 353 EWLAYRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMQRFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +++ Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+  
Sbjct: 413 ISDTQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQAD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +    D  RR T   E     KA  +   +  EP+T+V+S  GW+RS K H +D + 
Sbjct: 473 AQTYGD--DRLRRLTERAE----AKAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPAG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS   A+   +   ++ + +  ++  +    L S R  GE +   +       I
Sbjct: 527 LSYKAGDS-FAAVRGKSNQVVVFIDSTERSTAVDPMKLPSARRQGEPLTGKLTPPPGATI 585

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     KLL+ S  G  F+   ++++A  R GK  + +    +    +++ G    
Sbjct: 586 EQVLMAADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITLPDNARALPPMEIHGADDM 645

Query: 663 V--VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKICEGLTW-IDS 714
           +  +    ++L+F +  +P++S+GKG ++ S        G       F +    +  +  
Sbjct: 646 LLSITAAGRMLMFPVADLPQLSKGKGNKIVSIPAAQAAAGEDKLAWLFVLPPQASVTLYV 705

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       DL   L +RG  G+ +P+G  R  + 
Sbjct: 706 GKRKLTLRPEDLHEDLPERGRKGTQLPRGLQRIDRV 741


>gi|328553287|gb|AEB23779.1| DNA topoisomerase IV subunit A [Bacillus amyloliquefaciens TA208]
 gi|328911926|gb|AEB63522.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens LL3]
          Length = 807

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 218/754 (28%), Positives = 386/754 (51%), Gaps = 24/754 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+
Sbjct: 4   PELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSSIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +A +  I++P+ +++ L++ I GPDFPTGG I++  + I ++Y  G+G   +R
Sbjct: 184 HHLGEVIDAVIKRIESPDCTVDDLMQVIKGPDFPTGG-IIQGVDGIRKAYETGKGKIIIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  VE V  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+
Sbjct: 243 GKAEVEAVRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D   ++  ++  +D++T +     V    R P +M L  IL  +++H++EV+ 
Sbjct: 303 VELKKEADAKGILNFLYKNTDLQTTYNF-NMVAIHNRRPMLMSLTAILDAYISHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
            RS F +Q    R  I++GL+ A   +DE+IA+IR     K    +   +FS TE Q +A
Sbjct: 362 NRSVFELQKAKERHHIVEGLMKALSVLDEVIAVIRASSDKKDAKQNLISKFSFTEPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +   +K E + L  + ++++++L+  K+    I   ++++K+ ++ S 
Sbjct: 422 IVSLQLYRLTNTDITALKEEAEELSKKIQELEAILSHDKKLLKVITSSLKKLKKTYADS- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R +  E    +     + M+  E + V ++  G+++     S    +      K+
Sbjct: 481 -----RRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVKRTSQRSFAASNGQDFGMKD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D L      +TTD +LL +  G     P   L   R       +  +  ++ ++ IV A
Sbjct: 536 TDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHVTNITTIDRDETIVKA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-H 660
                ++    LL ++  G     E +   A    K    L +  ++++  V    G   
Sbjct: 596 IPVKEFNPASYLLFMTKNGMVKRTEMTHYKAQRYSKALVALNLKGDDELVDVHVTDGGCQ 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +       L F  D++  +  R  GV+  + KDG    V    + E  + +    R  
Sbjct: 656 LFIATHLGYGLWFGEDEVNVVGARAAGVKGINLKDGDTV-VSGQILHETDSLVLVTQRGA 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
            +  N        R   G ++ +   ++  + + 
Sbjct: 715 IKRMNLSEFEKTSRAKRGVIMLRELKKNPHRVVG 748


>gi|306841825|ref|ZP_07474508.1| DNA gyrase, A subunit [Brucella sp. BO2]
 gi|306288106|gb|EFM59500.1| DNA gyrase, A subunit [Brucella sp. BO2]
          Length = 889

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 253/818 (30%), Positives = 391/818 (47%), Gaps = 114/818 (13%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA +VGEV+GK HPHGD S+Y +L
Sbjct: 1   MSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYGAL 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+ +V E +L  +D+D V+F+D Y
Sbjct: 61  VRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+
Sbjct: 121 DGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           E I GPDFPTGGII+  R  I  +Y  GRG   +R R  +E +      I++TEIPYQV 
Sbjct: 181 ELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K+ +IEK+AEL+  KRI  + D+RDES  +   V+    R    D+++  ++  + ++T 
Sbjct: 240 KASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTS 299

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+ F +     R  +L GL IA  
Sbjct: 300 FGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVA 358

Query: 399 NIDEIIAIIRNEDKPKP-----------------------------VMVSRFSLTENQVD 429
           NIDE+IA+IR    P                                  + ++L+E Q  
Sbjct: 359 NIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQAR 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+LRL+ L  L   ++  EL+ +  E      +L S  +  N +  E+  V++ F+  
Sbjct: 419 AILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT   E+         + +I +E + V +S+ G+I+          +      S
Sbjct: 479 -----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRS 530

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +  KE D +     A+T   +L  S+ G  Y      L   + +  G+A+  ++ L   
Sbjct: 531 GMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQG 590

Query: 600 QDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKL 652
           + I T               ++  +++G     + S+ +   R GK  +K+    +++  
Sbjct: 591 ERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILS 650

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVICF------ 703
           V   T  D V +     + + F +  +     R   GVR  +  +G     +        
Sbjct: 651 VDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDA 710

Query: 704 ---------------------KICEGL--------------------------TWIDSAG 716
                                   + +                          T +  + 
Sbjct: 711 TPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSE 770

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKG--FPRSGKFLS 752
             Y +  +     +  RGG G            GK ++
Sbjct: 771 FGYGKRSSSYEFHISGRGGKGIRATDTSKTDEIGKLVA 808



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS  G        E   + R GK        K     K+  +  V G D + +V
Sbjct: 762 EETVLTVSEFGYGKRSSSYEFHISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 821

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
            +  +L+   +D I    R  KGV + +  DG  +  V      +        G  
Sbjct: 822 SDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDE---ENGNG 874


>gi|138895302|ref|YP_001125755.1| DNA topoisomerase IV subunit A [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266815|gb|ABO67010.1| DNA topoisomerase IV A subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 816

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 213/758 (28%), Positives = 383/758 (50%), Gaps = 24/758 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           ++ E +  + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      
Sbjct: 2   MMAERLLELPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYVDGNTADKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RY
Sbjct: 62  FRKAAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSLDGDPPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V F   +++  +EP V P+ FPNLL NG++GI+ G AT I
Sbjct: 122 TEARLSAIAAELLRDIDKETVAFVPNFDDTTNEPTVLPAMFPNLLVNGSTGISAGYATDI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H + E+ +A L  ID P  +++ L+  + GPDFPTGG I++ ++ I ++Y  GRG   
Sbjct: 182 PPHALGEVIDAVLLRIDRPNCTVDNLMTVLPGPDFPTGG-IIQGKDGIRKAYETGRGKII 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E+   G   I++TE+PY+V K+ L++KI EL + K++  + D+RDE+  +   
Sbjct: 241 IRAKATIEQAKGGKRHIMITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLS 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  D + ++  ++  +D++  +     V    R P++M L  +L  ++AHR++V
Sbjct: 301 IVIELKKDADAEAILNYLYKNTDLQVPYSF-NMVAIHERRPKLMSLPELLDAYIAHRKDV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           +  RS F ++  + R  I+ GL+ A   +DE+IA IR     +         +  TE Q 
Sbjct: 360 VTNRSHFELKKANERKHIVDGLIKALSILDEVIATIRASSDKRDAKDRLIANYGFTEAQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   ++ E + L     ++ ++L   K+    I  E++ +K+ ++ 
Sbjct: 420 EAIVTLQLYRLTNTDITALRQEAEGLDKTIAELTAILADEKKLLAVIKKELKSMKKQYAD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                  R T  E    +     +A+I  E + V ++  G+++     S    +   +  
Sbjct: 480 E------RRTVIEEEIEELKVNVEALIPAEDVIVTVTKEGYVKRTSYRSYSASNGQDIGM 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIV 603
           KE D L   L  +TTD +LL +  G     P   L   R       I  LI +  + ++V
Sbjct: 534 KETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKDVGQHISSLIPIERDDELV 593

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD 659
                  +++  +L+ V+  G     E S+       +    + +  ++++  V    G 
Sbjct: 594 AVVPVSSFETNEQLVFVTKHGMVKRTELSQYQVQRYTRPLVAVNLKGDDQVIAVYATDGR 653

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVIC-FKICEGLTWIDSAG 716
            +  +   +   L+F+ ++I  +  R  GV+    K+G     +C     E  + I    
Sbjct: 654 GLIWMATHDGYALLFAEEEISLVGVRAAGVKGIQLKEGDFVAAVCPICPEESGSLIVVTQ 713

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
           R   +           R   G ++ +    +  + + +
Sbjct: 714 RGAVKKMALSEFEPTSRARRGVMIVREVKSNPHRIVGA 751


>gi|91228381|ref|ZP_01262308.1| DNA topoisomerase IV subunit A [Vibrio alginolyticus 12G01]
 gi|91188080|gb|EAS74385.1| DNA topoisomerase IV subunit A [Vibrio alginolyticus 12G01]
          Length = 761

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 276/754 (36%), Positives = 447/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNP+  +  +++Y+ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGD-----DRRSPMVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +    + L +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSNQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     LV S  G  F+ + +++++  R GK  + + +  ++    ++     D + 
Sbjct: 591 IMSEEEQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEIMTPKEIEDLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++++GKG ++ +      K+          + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLMSLPKGASLTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R      +DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKPSDLDNFRGERGRRGGLLPRGLQRVTRI 744


>gi|163731772|ref|ZP_02139219.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149]
 gi|161395226|gb|EDQ19548.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149]
          Length = 912

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 253/849 (29%), Positives = 401/849 (47%), Gaps = 109/849 (12%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
             D +     + +    +VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI+ AM
Sbjct: 10  SDDEMRPERPVYDGP--SVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAM 67

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E G     +++KSAR VG+V+G+ HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++
Sbjct: 68  HETGNTHDKSYRKSARPVGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 127

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD+ AA RYTE RM + A  +L  +D+D V+++D Y+ +  EP V P++FPN+L NG  
Sbjct: 128 DGDNPAAMRYTEVRMDKPAAYLLADIDKDTVNYQDNYDGKQKEPTVLPARFPNMLVNGAG 187

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A LALI+ P+++ E+L++Y+ GPDFPTGGI++  R    +
Sbjct: 188 GIAVGMATNIPPHNLGEVIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIML-GRTGARK 246

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  VEE+ +  W IVV EIPYQV K+ +IEKIAE +  K+I  +  +
Sbjct: 247 AYLEGRGSVIIRAKTRVEEIRKDRWAIVVDEIPYQVNKATMIEKIAEQVREKKIEGISHV 306

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           +DES  +   V+    R    +++M  ++  + ++T F  NM  L+ G  P+ + L   L
Sbjct: 307 QDESDRNGVRVVVELKRDATAEVVMNQLYRFTPLQTYFGCNMLALN-GGRPEQLTLRKFL 365

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------- 412
             ++  R EV+ RR+++ ++    R  +L GL +A  NIDE++A IR+            
Sbjct: 366 TYFIDFREEVVARRTAYLLRKARERSHVLCGLAVAVTNIDEVVATIRSSADASEARSKLM 425

Query: 413 --------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       ++L+E Q  AIL+LRL+ L ++   ++  EL+
Sbjct: 426 TRRWPAQDILPYIALIDDPTHTANDDGTYNLSEAQARAILDLRLQRLTQIGVKEVTDELE 485

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            L  + ++   +L S  +  + I+ E+REV+E+F+       RRT   + S   +    +
Sbjct: 486 ELAGKIKEYLDILGSRDRIMSIISDELREVRELFAVP-----RRTEIVDWSGDME---DE 537

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V ++  G+I+                LS    KE D +     A+T  ++L
Sbjct: 538 DLIAREDMVVTVTQGGYIKRTPLADFRSQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLL 597

Query: 565 LLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLV 616
             +TDG AY L    L        G+AI  ++ +     I      D   K      ++ 
Sbjct: 598 FFTTDGMAYKLKTWRLPQGGRTSKGKAIINILPIPQGVSIAAILPIDRDEKDWSELQIVF 657

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT-GDHVAVVGENRKLLI 672
            +S G       S+       GK  +K   E     +      +  D V +V  + + + 
Sbjct: 658 ATSAGTVRRNALSDFTNVKSNGKIAMKFEDEHAETTLINARIASPDDDVMLVTASGRAIR 717

Query: 673 FSIDQIPEM-SRGK-GVRLQSYKDGGISDVICFK-------------------------- 704
           F    +    SR   GVR            +                             
Sbjct: 718 FPSTDVRVFNSRSSVGVRGVRLTGDDKVVSMSVIRHFNATSDERVAYLKMRRAMAGLADD 777

Query: 705 --------------------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                                      +    +   +  +     +  RGG+G       
Sbjct: 778 AEIEEEETTGESVEIDYAKMSAAENLILTITAQGSGKLSSSHDYPVRGRGGMGVQAMDKA 837

Query: 745 PRSGKFLSS 753
            R G  ++S
Sbjct: 838 MRGGPIVAS 846



 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 52/154 (33%), Gaps = 5/154 (3%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           R    ++D +   L     ++G      I+       + +I  A +  +   +L ++++G
Sbjct: 752 RHFNATSDERVAYLKMRRAMAGLADDAEIEEEETTGESVEIDYAKMSAAENLILTITAQG 811

Query: 622 NAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ 677
           +  +    +     R G     +        +     V   D + +     + +   ++ 
Sbjct: 812 SGKLSSSHDYPVRGRGGMGVQAMDKAMRGGPIVASFPVEMDDQIMLATSKGQSIRVPVEG 871

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           I   SR   GV++ +   G     + +   +G  
Sbjct: 872 ISFRSRSAGGVKVFNTGKGEEVVSVAWIADQGEE 905


>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039859|gb|ACT56655.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 910

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 250/851 (29%), Positives = 397/851 (46%), Gaps = 112/851 (13%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++I +S+   E+ + +VS+   ++  YL YA++ I  RAIPDLRDG KPVHRRI+  M +
Sbjct: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MG+++   + K ARI GEV+GK HPHG+ ++YD+L R+AQ +  R  LI GQGNFG++DG
Sbjct: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTE R+ + A  +L  + +D VDFR  Y+    EPVV  +++PN+L NG  GI
Sbjct: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP+HN+ E+ +  +A+IDNP+I ++ L+E I GPDFPTG +I+  R  I  +Y
Sbjct: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAY 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +R    +E+       IVVTEIPYQV K+ ++EKIAEL+  KRI  + D+RD
Sbjct: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      V+    R    D+++  ++  + +++ F +NM  L+ G  P+   L GILK 
Sbjct: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           ++A R EV+ RR+ + +     R  +L GL IA  N+DE++ IIR    P+         
Sbjct: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420

Query: 423 ----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                       L+E Q  AIL LRL  L  L    I++EL++L
Sbjct: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
             E ++   +L+S  +    I  E+  VK+          RRT   E     +    +  
Sbjct: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME---DEDC 532

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I +E + V +S+ G+++          +      S +  ++ D +       T   +L  
Sbjct: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVS 618
           S+ G  Y      L   S +  G+A+  ++ LN  + I T   +           ++  +
Sbjct: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ 677
             GN    + S+ I   R GK  +K+ S +++  V   T  + + +  +  + + F I  
Sbjct: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712

Query: 678 IPEM-SRGK-GVRLQSYKDGGISDVICFKICEGLT------------------------- 710
           I     R   GVR  S   G     +   +                              
Sbjct: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772

Query: 711 ---------------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                       +  + + + +  +     +  R G G      
Sbjct: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832

Query: 744 FPRS--GKFLS 752
              +  G  ++
Sbjct: 833 SKINEIGALVA 843


>gi|126659835|ref|ZP_01730961.1| DNA gyrase, subunit A [Cyanothece sp. CCY0110]
 gi|126618892|gb|EAZ89635.1| DNA gyrase, subunit A [Cyanothece sp. CCY0110]
          Length = 838

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 227/778 (29%), Positives = 378/778 (48%), Gaps = 48/778 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K 
Sbjct: 12  EITPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKC 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 131

Query: 136 MTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ +A+  +L  + E  VDF   ++    EPVV P++ PNLL NG +GIAVGMAT+IP H
Sbjct: 132 LSPIADQAMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +ALIDNPE+S EKL + I GPDFPTGG I+++ + I ++YR G+G   VR 
Sbjct: 192 NLGELVDGLIALIDNPELSDEKLWKIIPGPDFPTGGEIIQT-QGIEDAYRHGKGIIPVRG 250

Query: 255 RWCVEEVGRGSWC------IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +E +  G         I+VTE+PYQV KS  IEKIA+L+   R+  + DIRDES   
Sbjct: 251 VVKIERMDVGKKRRKERTAIIVTELPYQVTKSTWIEKIADLVNGGRLDGIADIRDESDRT 310

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R      ++  ++  + ++  F   M  L     P+ + L  +L+E+L  R
Sbjct: 311 GMRVVIELKRDAVAKTVLRELYKKTALQQNFGAIMLALVD-NQPRQLSLRQLLEEFLKFR 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
              L R+ ++ ++    R+ +L+GLLI       + +I+    +    K       +L+E
Sbjct: 370 EHTLTRQYNYELEECRNRLHLLEGLLIALEDLDRMIDILRHAADGTTAKAQFQQELNLSE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL + +R L  LE  ++++E D L     ++++LLN+  +    +  E+R +K  
Sbjct: 430 AQANGILAMPMRRLTGLERQKLQAEYDELAGRINELENLLNNRPEFLKVLKKELRSLKRK 489

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-- 543
           +        R         + K                 ++              +    
Sbjct: 490 YGD--QRRTRIVQPTPQKSSSKTAQTTKKQNNSQNLTTATSDKETEKTTRPFSLFTPQTP 547

Query: 544 ---------------------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
                                   +      +      ++ ++++  GKAY +   ++  
Sbjct: 548 PKNAILEMTYQGTICWRSPDTKVPDNHVSIYSEAIQEREQFIVITDIGKAYPVNVADVPP 607

Query: 583 GRGHGEAIQLLID---LNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTR 636
                  +  L+       ++ +V+ F          LL+++++G    V+ SE+   T 
Sbjct: 608 IDIQPIPLLSLLSKTAQRDSKKVVSLFFLSDTTDNKDLLLLTNQGKIKRVQLSELEGLTN 667

Query: 637 KGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSY 692
           +G   +K+  ++ ++ V     G+ VA+   + ++L F +    IP M R  +G +    
Sbjct: 668 RGLVLIKLKEQDSLESVSITKEGEEVAIAMSSGRVLRFPVVDEVIPIMGRNAQGNQALKS 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           + G    V C  + E    +  +   Y +  N     + K G +G+   +   +    
Sbjct: 728 RYGETI-VSCVTLDENKIVLLVSKLGYGKRLNITGLRMTKLGDIGTQALQFTNKQDSL 784


>gi|329924959|ref|ZP_08279906.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. HGF5]
 gi|328940343|gb|EGG36672.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. HGF5]
          Length = 819

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 228/766 (29%), Positives = 396/766 (51%), Gaps = 36/766 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E      L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      +
Sbjct: 3   LSEQFLPAFLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+V+G  HPHGD S+Y+ +VR+AQP+   + L+ G GN+G+ D D AAA RYT
Sbjct: 63  RKSAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +++  V F+D ++    EPVV PS++PNLL NG SGI+ G AT IP
Sbjct: 123 EARLSPIAMELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+ +A +A++  PEI +++++ +I GPDFPTGGII+     + ++YR G+G   +
Sbjct: 183 PHNLREVIDACIAVMQKPEIELDEIMTFIKGPDFPTGGIIMGGEGIL-DAYRTGKGRVYL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +E +  G   IV+TEIPYQV KSRL+  +  + + K++  + ++RDES  +   +
Sbjct: 242 RSKTDIESLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++  +F  +D++  +  NM  +   + PQ + L  +L  ++ H+REV+
Sbjct: 302 VVELKKDADANGILAYLFKKTDLQITYNFNMVAIV-NKTPQQLGLKAMLSAYIHHQREVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F ++  + R  +L+GL+ A   +DE+IA I+        +  +   F  TE Q D
Sbjct: 361 THRTQFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQAD 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           +IL L+L  L  LE + ++ ELD L  + E + ++L+S K+    I  E+ E++E +   
Sbjct: 421 SILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIGVIRKELIEIREKYG-- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-----DLSALH 544
                RR+   E          + ++  E + V +SN G+I+     S      +L +  
Sbjct: 479 ---IDRRSVIQEEVEEI-KVNLEVLVNAEDVLVTLSNEGYIKRTSMLSFTRSGGELESSG 534

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDI 602
            KEGD +      +T + +L+ ++ G+ + LP   +   +      AI  +I +     I
Sbjct: 535 VKEGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAIVNVIQVPKEDHI 594

Query: 603 VTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
           V+        ++   L+ VS KG     +  E +          KV++E+ +  VV    
Sbjct: 595 VSVIPVSNFDEAGKSLVFVSRKGQVKRTDLKEYVTKRSGAVAAAKVAAEDSIIQVVMSDS 654

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + ++ +    + F+  ++  M R   GVR    +DG       +   +    +    
Sbjct: 655 NKDIVLISKEGMSIRFNEQEVNAMGRVSGGVRGIQLRDGDEVVAALWVENDEGEILTITD 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGK--------FLSS 753
             Y +    L      RGG G      F  + GK         + +
Sbjct: 715 LGYGKRSLLLDYPAQSRGGKG---MATFEFKEGKRVKPNGSAIVGA 757


>gi|262376957|ref|ZP_06070183.1| DNA topoisomerase IV, A subunit [Acinetobacter lwoffii SH145]
 gi|262307995|gb|EEY89132.1| DNA topoisomerase IV, A subunit [Acinetobacter lwoffii SH145]
          Length = 739

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 268/745 (35%), Positives = 434/745 (58%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL + 
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKWT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP I GQGN+G+ D   S AA
Sbjct: 62  SKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++Q +EL+L  + +   +++D ++    EPV  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSQYSELLLSELGQGTCEWQDNFDGSMKEPVNLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP ++ EK+ EYI  PD PT   I+     +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPNLTDEKIAEYIPAPDLPTKAEIITPPAELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE- 307
            +R+RA + V         I++TE+PYQV  S++I +IA+ + AK++PL+ D+RDES   
Sbjct: 242 SYRMRAVYSV-----DKNEIIITELPYQVSGSKIITQIADQMQAKKLPLVSDVRDESDHA 296

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +NMN++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAESVMSHLFATTDLESSYRVNMNMIGADGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R+  + RR  + +  I++R+ IL GL+IAYLNIDE+I IIR ED+PKPV++ RF++ E 
Sbjct: 357 IRKTTVTRRLQYHLNKIEKRLHILGGLIIAYLNIDEVIQIIREEDQPKPVLMQRFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +++ E + L A+   I   L + +   + I  E+++  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEMRREQEELEAKAAVIREQLANPESLKSLIISELKDDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   + + A     +  M+  +P+TVV+S  GWIR  K H VD   L+F+
Sbjct: 477 GD-----DRRSPIVQRAEA-AVINETEMLPADPVTVVLSEAGWIRCAKGHEVDAENLNFR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         +  R+ +L   G++Y L    L S RG GE +   +            
Sbjct: 531 AGDQYLSHAQGKSNQRVYVLDDTGRSYALAINTLPSARGLGEPLSSKLSPGSGVGFKQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
           V +   ++L  S+KG  F  +  ++  + + GK FL +S   ++  +  +    HVA++ 
Sbjct: 591 VAEDETEILAASNKGYGFKTQAKQLDTSAKAGKAFLNLSEGAEVMNLQPLEDATHVALLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +DG     +     + +  + +  +      +D
Sbjct: 651 SAGRLLIVDLAELPVLNKGKGNKLIQLEDGDQILSMTLLKLDEIIQVLAGQQQLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  ++GKRG  G L+P+G+ ++ K 
Sbjct: 711 LRKYIGKRGAKGQLLPRGYQKANKL 735


>gi|84686892|ref|ZP_01014776.1| DNA gyrase subunit A [Maritimibacter alkaliphilus HTCC2654]
 gi|84665089|gb|EAQ11569.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2654]
          Length = 917

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 248/823 (30%), Positives = 394/823 (47%), Gaps = 110/823 (13%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E+G      ++KS+R 
Sbjct: 25  SITIEQEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNTHDKPYRKSSRP 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           V + +G+ HPHGD ++YD+L R+ Q F    PL+ GQGNFG++DGD  AA+RYTE RM +
Sbjct: 85  VADTMGQYHPHGDAAIYDALARMTQDFSMSLPLLDGQGNFGSMDGDKPAAFRYTEVRMEK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A+ +L+ +D+D VDF+D Y+ +  EP+V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 AAQALLEDIDKDTVDFQDNYDGKQREPMVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+I++P+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  V
Sbjct: 205 VVDATLAMIESPDISDERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVILRAKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IVV E+P+QV K+ +IEKIA+L+  K++  +  I+DES      V+    R
Sbjct: 264 EEIRKDRYAIVVDEVPFQVNKAMMIEKIADLVRDKKLEGIAAIQDESDRLGVRVVIELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  +F  + ++T F  NM  L+ G  P+ + L   L+ ++  R EV+ RR++F
Sbjct: 324 DATPEVVLNQLFRFTQLQTSFGCNMLALN-GGKPEQLTLRDFLRHFITFREEVVARRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------------------- 412
            ++    R  IL GL +A  N+DE++A IR                              
Sbjct: 383 LLRKARDRSHILCGLAVAVSNVDEVVATIRASADAAEAREKLMTRRWPAEDIADYIRLVD 442

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL  L  +  +   +L S  
Sbjct: 443 DPTHTMNDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLDILRSRD 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+  VK+ F+       RR+   E S        + +IE+E + V I+  GW
Sbjct: 503 RIMAIISDELTAVKDEFAVP-----RRSEIVEWSGDMD---DEDLIEREDMVVTITQSGW 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
            +          K     LS +  K+ D +     A+T  ++L  +TDG AY L    L 
Sbjct: 555 AKRTPLAEYREQKRGGKGLSGMATKDEDVITTLFVANTHTQLLFFTTDGMAYKLKTWRLP 614

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +SKG+      S+   
Sbjct: 615 LGGRTSRGKAIVNILPIPTGVGIAAIMPVDRDEADWDDLQIVFATSKGSVRRNRLSDFTN 674

Query: 634 NTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SR-GKGV 687
             R GK  +K   E++   +         D V +V    + + F +  +    SR   GV
Sbjct: 675 VMRNGKIAMKFEGEDENTRLINARICDENDDVMLVTNKGRAIRFPVPDVRVFNSRNSTGV 734

Query: 688 RLQSY--KDGGISDVICFKI---------------------------------------- 705
           R      KD  +  +   +                                         
Sbjct: 735 RGIRLLGKDDEVVSMSVIRHFDATSEERTAYLKMRRQMAGADETDDSDDEDEAVEGAITQ 794

Query: 706 -------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                        +    +   +  +     +  RGG G    
Sbjct: 795 ERFEEMQAAEELILTITEKGLGKLSSSHDYPVRGRGGQGVTAF 837



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 16/110 (14%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVT-GDHVAVVG 665
           +   +L ++ KG   +    +     R G     F K      +     V   D V +  
Sbjct: 803 AEELILTITEKGLGKLSSSHDYPVRGRGGQGVTAFTKAMPGGDLVACFPVGMEDQVMLAT 862

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
              + +   ++ I   SRG G             V  F   +G + +  A
Sbjct: 863 SKGQSIRCPVNGISFRSRGAG------------GVKVFNTGKGESVVSVA 900


>gi|282896504|ref|ZP_06304524.1| DNA gyrase, subunit A [Raphidiopsis brookii D9]
 gi|281198610|gb|EFA73491.1| DNA gyrase, subunit A [Raphidiopsis brookii D9]
          Length = 830

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 232/759 (30%), Positives = 361/759 (47%), Gaps = 49/759 (6%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK HPHGD +V
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVDEDAVD 153
           YD+LVR+AQ F  R PLI+G GNFG+ID D  AA RYTE R+  +    +LQ ++ + VD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F D ++    EP V PS+ P LL NG+SGIAVGMAT+IP HN+ E+ +  +ALI NPEI+
Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIHNPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV----GRGSWCIV 269
             +L++Y+ GPDFPTG  I+    +I E+Y  GRG   +R    +E +          I+
Sbjct: 181 DTQLMQYVHGPDFPTGAQIL-GTSAIKEAYTTGRGSITMRGVATIETIQQRNRPEREAII 239

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           +TE+PYQ  K+ LIEKIAEL+  K+I  + DIRDES  D   ++    R   P +++ ++
Sbjct: 240 ITELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNL 299

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + ++T F  NM  L     PQ++ L   L  +L  R E + RR+ ++++  + R  +
Sbjct: 300 YKQTPLQTNFGANMLALV-NGEPQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHL 358

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GLLIA  ++D II +IRN           ++ + L+E Q DAIL ++LR L  LE  +
Sbjct: 359 LQGLLIALAHLDSIINLIRNAPDAPTAKGELINSYGLSEVQADAILQMQLRRLTALEADK 418

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I+ E + L  +   +  +L+  ++    I  E  ++K  F+                   
Sbjct: 419 IRLEHEELQLQITDLRDILDRRERVLEIIETEAGQIKTQFTTPRRTTITHAEGEIDDIDL 478

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
            A  +  ++  +   +         S    +   +    KE D+++  L     D +L  
Sbjct: 479 IANEKVLILLTQQGYIKRMPVSTFESQNRATRGKAGAKVKEDDTIEHFLTCCDHDSVLFF 538

Query: 567 STDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           S  G  Y+L A  +        G  I  ++ +   + I +      + S   L++++  G
Sbjct: 539 SDRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEEKITSIVSVSEFSSEEYLVMLTKGG 598

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQI 678
           N               G   + +   ++++ V +    D V +       + F    DQ+
Sbjct: 599 NIKKTALEAFSNIRANGLIAISLEEGDQLRWVRRAKPEDSVMIGSRQGMAIHFRCDNDQM 658

Query: 679 PEMSRG-KGVRLQSYKDGGISDVICFKICE------------------------------ 707
             + R  +GV+    K G     +                                    
Sbjct: 659 RPLGRATRGVKSMKLKTGDELIGMDILPAAILNTLNTEMEEELTEVEETSDNIEETSNIL 718

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           G   +      Y +        L  R G G    K   R
Sbjct: 719 GPWVLIITIGGYGKRVPVGQFRLQNRAGQGLTATKFKNR 757



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSS---EEKMKLVVKVT-GDHVAVVGEN 667
           +L+++  G    V   +     R G   T  K  +   ++++  +  V   + + +    
Sbjct: 722 VLIITIGGYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVNPDEEIMMATNR 781

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             ++  SI+ I   SR   GVR+Q   +      +     +
Sbjct: 782 GIIIRQSINAISIQSRTATGVRVQKLDEDDAITGVAVVPPD 822


>gi|261406138|ref|YP_003242379.1| DNA topoisomerase IV subunit A [Paenibacillus sp. Y412MC10]
 gi|261282601|gb|ACX64572.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. Y412MC10]
          Length = 819

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 228/766 (29%), Positives = 396/766 (51%), Gaps = 36/766 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E      L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      +
Sbjct: 3   LSEQFLPAFLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+V+G  HPHGD S+Y+ +VR+AQP+   + L+ G GN+G+ D D AAA RYT
Sbjct: 63  RKSAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +++  V F+D ++    EPVV PS++PNLL NG SGI+ G AT IP
Sbjct: 123 EARLSPIAMELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+ +A +A++  PEI +++++ +I GPDFPTGGII+     + ++YR G+G   +
Sbjct: 183 PHNLREVIDACIAVMQKPEIELDEIMTFIKGPDFPTGGIIMGGEGIL-DAYRTGKGRVYL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +E +  G   IV+TEIPYQV KSRL+  +  + + K++  + ++RDES  +   +
Sbjct: 242 RSKTVIESLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++  +F  +D++  +  NM  +   + PQ + L  +L  ++ H+REV+
Sbjct: 302 VVELKKDADANGILAYLFKKTDLQITYNFNMVAIV-NKTPQQLGLKAMLSAYIDHQREVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F ++  + R  +L+GL+ A   +DE+IA I+        +  +   F  TE Q D
Sbjct: 361 THRTQFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQAD 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           +IL L+L  L  LE + ++ ELD L  + E + ++L+S K+    I  E+ E++E +   
Sbjct: 421 SILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIGVIRKELIEIREKYG-- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-----DLSALH 544
                RR+   E          + ++  E + V +SN G+I+     S      +L +  
Sbjct: 479 ---IDRRSVIQEEVEEI-KVNLEVLVNAEDVLVTLSNEGYIKRTSMLSFTRSGGELESSG 534

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDI 602
            KEGD +      +T + +L+ ++ G+ + LP   +   +      AI  +I +     I
Sbjct: 535 VKEGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAIVNVIQVPKEDHI 594

Query: 603 VTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
           V+        ++   L+ VS KG     +  E +          KV++E+ +  VV    
Sbjct: 595 VSVIPVSNFDEAGKSLVFVSRKGQVKRTDLKEYVTKRSGAVAAAKVAAEDSIIQVVMSDS 654

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + ++ +    + F+  ++  M R   GVR    +DG       +   +    +    
Sbjct: 655 NKDIVLISKEGMSIRFNEQEVNAMGRVSGGVRGIQLRDGDEVVAALWVENDEGEILTITD 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGK--------FLSS 753
             Y +    L      RGG G      F  + GK         + +
Sbjct: 715 LGYGKRSLLLDYPAQSRGGKG---MATFEFKEGKRVKPNGSAIVGA 757


>gi|308173788|ref|YP_003920493.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
 gi|307606652|emb|CBI43023.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
          Length = 807

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 218/754 (28%), Positives = 386/754 (51%), Gaps = 24/754 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+
Sbjct: 4   PELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSSIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +A +  I++P+ +++ L++ I GPDFPTGG I++  + I ++Y  G+G   +R
Sbjct: 184 HHLGEVIDAVIKRIESPDCTVDDLMQVIKGPDFPTGG-IIQGVDGIRKAYETGKGKIIIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  VE V  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+
Sbjct: 243 GKAEVEAVRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D   ++  ++  +D++T +     V    R P +M L  IL  +++H++EV+ 
Sbjct: 303 VELKKEADAKGILNFLYKNTDLQTTYNF-NMVAIHNRRPMLMSLTAILDAYISHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
            RS F +Q    R  I++GL+ A   +DE+IA+IR     K    +   +FS TE Q +A
Sbjct: 362 NRSVFELQKAKERHHIVEGLMKALSVLDEVIAVIRASSDKKDAKQNLISKFSFTEPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +   +K E + L  + ++++++L+  K+    I   ++++K+ ++ S 
Sbjct: 422 IVSLQLYRLTNTDITALKEEAEELSKKIQELEAILSHDKKLLKVITSSLKKLKKTYADS- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R +  E    +     + M+  E + V ++  G+++     S    +      K+
Sbjct: 481 -----RRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVKRTSQRSFAASNGQDFGMKD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D L      +TTD +LL +  G     P   L   R       +  +  ++ ++ IV A
Sbjct: 536 TDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHVTNITTIDRDETIVKA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-H 660
                ++    LL ++  G     E +   A    K    L +  ++++  V    G   
Sbjct: 596 ISVKEFNPASYLLFMTKNGMVKRTEMTHYKAQRYSKALVALNLKGDDELVDVHVTDGGCQ 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +       L F  D++  +  R  GV+  + KDG    V    + E  + +    R  
Sbjct: 656 LFIATHLGYGLWFGEDEVNVVGARAAGVKGINLKDGDTV-VSGQILHETDSLVLVTQRGA 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
            +  N        R   G ++ +   ++  + + 
Sbjct: 715 IKRMNLSEFEKTSRAKRGVIMLRELKKNPHRVVG 748


>gi|281357344|ref|ZP_06243833.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548]
 gi|281316375|gb|EFB00400.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548]
          Length = 885

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 252/791 (31%), Positives = 396/791 (50%), Gaps = 69/791 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+  T        V++   +   YL Y+LS    RAIPD+RDG KPV+RRI++AM ++G
Sbjct: 1   MSDLGT----RDFQVNIEDIMHTAYLQYSLSVNVGRAIPDVRDGLKPVNRRILYAMRQLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A  K AR+VGEV+GK HPHGD ++YD+LVRLAQ F  R PLI GQGNFGNIDGD 
Sbjct: 57  LGKSHATVKCARVVGEVMGKYHPHGDAAIYDALVRLAQDFSMRNPLIEGQGNFGNIDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++AE +L  +++D V+    ++E ++EP V P+++P LL NGT+GI V
Sbjct: 117 AAASRYTECRMERLAEELLADIEKDTVNMIPNFDESETEPEVLPARYPQLLVNGTTGIGV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN+ E+ +A + L+DNP+ ++++L+EY+ GPDFPTG  I+  R S+ + Y+ 
Sbjct: 177 GMATSIPPHNLGEVIDATICLLDNPKATVDELMEYLPGPDFPTGA-IIRGRYSMRQFYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G G  ++RA+  + E   G   I+V+EIPY + K +L++KIAEL+  KRI  +  +RDES
Sbjct: 236 GHGSIKIRAKADIIE-KDGREQIIVSEIPYAICKEQLVKKIAELVNDKRITGISGLRDES 294

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +      ++    R     +++  +F  + +ET     M V+   R P+ M L  +L+ +
Sbjct: 295 SKRTGMRIVIEIKRGAMGSVVLNQLFAHTMLETTIGCTMLVVDHNR-PRTMNLVQVLQAY 353

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRF 421
           + HR EV+ RR+ F ++    R  IL+GL+ A  NI++++ IIR     +     +++RF
Sbjct: 354 IDHRLEVIVRRTLFELKKAQARAHILEGLMKALANINDVVQIIRESRSRQDAAANLIARF 413

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             T+ QVDAIL++RL  L  L    + +E + L    E + +L  S + Q   I  E++E
Sbjct: 414 EFTQIQVDAILDMRLHQLTGLAIETLTAEYEELKKRIEYLTALAASREMQLGVIKDELKE 473

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           ++E ++       RRT   E++  D       +I +    + +SN G+I+          
Sbjct: 474 IREKYADP-----RRT---EITIDDTDLNIADLIPRHSCVITVSNTGYIKRVPADTYRTQ 525

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
                 +  +  KE D ++   +A + D I   +  G  Y L    +  G   G+  AI 
Sbjct: 526 HRGGKGIIGMETKEEDHVEHLFNADSHDIIFFFTDRGFMYWLNVYEIPEGSRTGKGRAIT 585

Query: 592 LLIDLNHNQDIVTAFVY------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            +I +   + I            D    +++ S +G     E +      R G   L + 
Sbjct: 586 NMIKVEPGEKICAMLTVRQEEFDDPNKYIVMASRRGFIKKSELALFKNLRRVGLRALVIE 645

Query: 646 SEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVI 701
            ++ +        G+ + +  +     +F  D   I  M R  +GV    +K  G S V 
Sbjct: 646 EDDDLIGAGISENGNEILLSTKFGMACLFDQDDDQIRPMGRTARGVTGMRFKIEGDSVVS 705

Query: 702 CFKICE------------------------------GLTWIDSAGRSYNRSENDLLGWLG 731
              I E                              G   +        +          
Sbjct: 706 LEIIREHLYEEPAEDEEGEEVEVEVDVDEEMPVVGSGPEVLVVTDGGMGKRSYVSTYRKT 765

Query: 732 KRGGVGSLVPK 742
           KRG  G +  K
Sbjct: 766 KRGAKGVVNIK 776



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVV-KVTGDHVAVVGENRKL 670
           +LVV+  G       S      R  K    +K+   E +  VV     D + +  E  +L
Sbjct: 745 VLVVTDGGMGKRSYVSTYRKTKRGAKGVVNIKLREGETVLSVVQITEEDEILLTTERGQL 804

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +     +I  + R   GVR+ +   G     + 
Sbjct: 805 VRIPAHEIRRVGRASYGVRIMNLNSGDRITGVA 837



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 47/429 (10%), Positives = 121/429 (28%), Gaps = 14/429 (3%)

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            +      G     + A +   E+ +    +       ++Q   + +++ E+      P 
Sbjct: 425 DMRLHQLTGLAIETLTAEYE--ELKKRIEYLTALAASREMQLGVIKDELKEIREKYADPR 482

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV-LSMGRVPQVMP 356
             +I  +   D+ I       S    +           +T    +      +G   +   
Sbjct: 483 RTEITID-DTDLNIADLIPRHSCVITVSNTGYIKRVPADTYRTQHRGGKGIIGMETKEED 541

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
               L    +H  +++F  +           EI +G           +  +   +K   +
Sbjct: 542 HVEHLFNADSH--DIIFFFTDRGFMYWLNVYEIPEGSRTGKGRAITNMIKVEPGEKICAM 599

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +  R    ++    I+    R   K  E  +     NL     +   +          I+
Sbjct: 600 LTVRQEEFDDPNKYIVMASRRGFIKKSELAL---FKNLRRVGLRALVIEEDDDLIGAGIS 656

Query: 477 CEIREV--KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
               E+     F  +    +       + R  +         +    V +         +
Sbjct: 657 ENGNEILLSTKFGMACLFDQDDDQIRPMGRTARGVTGMRFKIEGDSVVSLEIIREHLYEE 716

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
               +       E D  +      +   +L+++  G             +   + +   I
Sbjct: 717 PAEDEEGEEVEVEVDVDEEMPVVGSGPEVLVVTDGGMGKRSYVSTYRKTKRGAKGVVN-I 775

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
            L   + +++        ++L+ + +G    +   EI    R   G   + ++S +++  
Sbjct: 776 KLREGETVLSVVQITEEDEILLTTERGQLVRIPAHEIRRVGRASYGVRIMNLNSGDRITG 835

Query: 653 VVKVTGDHV 661
           V K+    V
Sbjct: 836 VAKLVEVDV 844


>gi|50083513|ref|YP_045023.1| DNA topoisomerase IV subunit A [Acinetobacter sp. ADP1]
 gi|49529489|emb|CAG67201.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ADP1]
          Length = 738

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 270/745 (36%), Positives = 429/745 (57%), Gaps = 16/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKST 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +  VD++D ++    EP+  P++ PN+L NGT GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTVDWQDNFDGSLKEPINLPARVPNILLNGTMGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NPE + EKL EYI  PD PT   I+  ++ +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPKDELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R RA + +         IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES   
Sbjct: 242 SYRARAVYHI-----DKNEIVITELPYQVSGSKVITQIADQMQAKKLPLVSDVRDESDHR 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D   +M  +F  +D+ET + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRVDAAAVMSHLFATTDLETSYRVNLNMIGSDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R+  + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKTTVTRRLQYHLNKIEKRLHILAGLLIAYLDIDTVIKIIREEDQPKPVLMQHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E + L A    I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRREQEELEARAAVIREQLGNPESLKNLIINELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   +   A     +Q ++  E +TVV+S  GWIRS K   VD   L+++
Sbjct: 477 GD-----DRRSPIVQREEA-VQIREQDLLPAETVTVVLSEAGWIRSAKG-EVDAENLNYR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD  +      +  R+ +L   G++Y L  GNL S RG GE +   +   +    +  +
Sbjct: 530 AGDQYQSHAIGKSNQRVYVLDETGRSYALSIGNLPSARGLGEPLSSKLSPANGVSFIQVY 589

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
           + D   +L+ VS  G  F  +  ++  N + GK FL V    K   ++ +    H+A++ 
Sbjct: 590 INDEESELIAVSDAGYGFKTQTKQLDTNAKAGKAFLSVPEGAKALPLLTIRDATHLAMLS 649

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
            + +LLI  + ++P +++GKG +L    D      +       +  + +  +      +D
Sbjct: 650 SSGRLLIVDLSELPILNKGKGNKLIQLDDKDQILSMTLLSLNEIIQVVAGQQHLKIKGDD 709

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  ++GKR   G L+P+G+ ++ + 
Sbjct: 710 LQKYMGKRATKGQLLPRGYQKANRL 734


>gi|237748748|ref|ZP_04579228.1| topoisomerase IV subunit A [Oxalobacter formigenes OXCC13]
 gi|229380110|gb|EEO30201.1| topoisomerase IV subunit A [Oxalobacter formigenes OXCC13]
          Length = 772

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 284/758 (37%), Positives = 419/758 (55%), Gaps = 36/758 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +     +E+ +++ L    E  YL YA+S +K RA+PD+ DG KPV RRI++AM+E+ LD
Sbjct: 9   DQLPPDDEHKESLMLASFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILYAMNELRLD 68

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
             A  +KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI G GNFG+ DGD AA
Sbjct: 69  SEAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSMRYPLIDGHGNFGSRDGDGAA 128

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T +AEL+L+ +D+  V+F+D Y+    EP + P++ P  L NG SGIAVGM
Sbjct: 129 AMRYTEARLTPIAELLLEEIDQGTVEFQDNYDGSTQEPKLLPARLPVTLLNGASGIAVGM 188

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IPSHN+ E+  AA+A+I NP IS  +L+E I GPDFP GG I+ +  +I E Y  GR
Sbjct: 189 ATEIPSHNLNEVATAAVAMIRNPSISHAELMEIIPGPDFPGGGQIITAPNTISEIYENGR 248

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--- 304
           G  +VRARW +EE+ RG W  VV+E+P      +++E+I E+   K     + +  E   
Sbjct: 249 GSVKVRARWKIEELARGQWQAVVSELPPGTSAQKVLEEIEEITNPKVRAGKKALSAEQVA 308

Query: 305 -----------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
                                VRIVL PK++  +PD  M+ +   + +E   P+N+ ++ 
Sbjct: 309 LRQQFLGILDTIRDEASRDAPVRIVLEPKSKRQNPDEFMQMLLAHTSLECNAPVNLVMIG 368

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
           +   P+   L  I+ EW+  R   + RR+++R++ +D R+ IL+G     LNID +I II
Sbjct: 369 IDGRPRQKGLTDIISEWIDFRFATVTRRTNWRLKRVDDRIHILEGRETVLLNIDAVIHII 428

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R  D+PK  ++  F L+E Q D IL +RLR L +LE+ +I+ EL  L  EK+ +  LL++
Sbjct: 429 RESDEPKAALIDAFQLSERQADDILEIRLRQLARLEKIRIEQELAELRKEKKGLHDLLDN 488

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                  I  EI   ++ +  +     RRT   E  RA      +  I  EP+TV+IS  
Sbjct: 489 PSSMKRLIIREIEADRKKYGDA-----RRTLIEEAERATA----EQKIVDEPVTVIISQN 539

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           GW+R    H ++LSA+ FK GD+L  +    +TD +L  S+ G+ YT+P   L  GRG G
Sbjct: 540 GWVRQRTGHGLNLSAITFKSGDNLFSSFECRSTDFLLAFSSTGRIYTIPVHQLPGGRGDG 599

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             I    ++  ++ IV   V      +L+    G  F  + S++++  R GK+F+ +   
Sbjct: 600 MPITTFAEIGIDETIVQYLVSSPDKSVLLSMDSGYGFAAKTSDMMSRVRNGKSFISLEDG 659

Query: 648 EKMK--LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           E +   LV+      + V+ E  + L+F   ++  +S  G GV L     G         
Sbjct: 660 ETLLPPLVIPEASKSIGVLSEKGRFLLFDATELRVLSSGGHGVILMGLDKGEKIRATLPV 719

Query: 705 ICEGLTWIDSAG--RSYNRSE--NDLLGWLGKRGGVGS 738
              G   I  A     Y      N +  + GKR   G 
Sbjct: 720 DDNGCLVICMAKNDNRYEVRISGNQIETYTGKRARKGK 757


>gi|71066423|ref|YP_265150.1| DNA topoisomerase IV subunit A [Psychrobacter arcticus 273-4]
 gi|71039408|gb|AAZ19716.1| DNA topoisomerase IV subunit A [Psychrobacter arcticus 273-4]
          Length = 772

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 271/762 (35%), Positives = 433/762 (56%), Gaps = 33/762 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              L  E +   S+    E+ YL YA+  I +RA+P++ DG KPV RRI++AMSE+GL  
Sbjct: 10  DPILANEPMDTRSVAEFAEQAYLNYAMYVIMDRALPNIADGLKPVQRRIVYAMSELGLKS 69

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G+ D   S A
Sbjct: 70  TAKAKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFA 129

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA+M+  A  +L  + +  VD++D ++    EP   P++ PN+L NGT+GIAVGM
Sbjct: 130 AMRYTEAKMSAYANTLLAELGQGTVDWQDNFDGTMQEPTTLPARLPNILLNGTTGIAVGM 189

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+  AA+ L+ NPE+S+++L + I  PD PT   I+ S++ +   Y  GR
Sbjct: 190 ATDIPPHNLIEVVRAAIRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQAMYETGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G +++RA + ++   +    +++  +PYQV  +++ E+IA+L+  K++P + DI DES  
Sbjct: 250 GSYKMRATFHIDPKEKNL--VIIDALPYQVSGNKIQEQIAKLMTDKKLPWITDIHDESDH 307

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIVL  ++  +D D +M  +F  +D+E+ + +NMN++ +   PQV  L  IL+EWL
Sbjct: 308 ENACRIVLELRSTRVDVDRVMSHLFASTDLESNYRVNMNMIGLNGKPQVKNLKEILEEWL 367

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR V+ RR  +R+  ID+R+ IL GLLIAYLNIDE+I IIR ED PK  ++  + LT+
Sbjct: 368 VCRRSVVTRRLQYRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPKLSLMQDYDLTD 427

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL++RLR L KLEE +++ E D L AE+  I   L++       +  E+      
Sbjct: 428 IQANAILDIRLRQLAKLEEIELRREQDELAAERAIIQEYLDNPDSLTTLMIDELT----- 482

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
            +   + G  R +        +A  +  ++  EPIT V+S  GWIR+ K H VD + + +
Sbjct: 483 -ADMKEHGNERVSPLAEREEAQALKESDLVPSEPITAVLSKAGWIRAAKGHDVDAAGMSY 541

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD+ +  +   + ++I +L + G++Y++ A +L S RG G+ +  ++           
Sbjct: 542 RSGDAYQAHVRGKSNEKIYVLDSTGRSYSIDAHSLASARGQGDPLTSVLKPPAGATFEQL 601

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG------- 658
                  ++++ SS+G  FI     + +N + GK  + +++  ++  +  +         
Sbjct: 602 LTGADDQRIILASSQGYGFINTIGNLDSNQKAGKNIINLAANSRLLPIACIDTQADLLVS 661

Query: 659 ---------------DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICF 703
                          DH+AVV     LLIF++D +PE +RGKG ++ + K       I  
Sbjct: 662 AENNGISDTENSSTPDHIAVVTNAGYLLIFALDDLPEQARGKGNKMITLKGDEEVLTITP 721

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +    I +  R       DL  +  KRG  G  +P+GF 
Sbjct: 722 LSKQDSLIITAGKRHVTLKPMDLANYTSKRGSRGGQLPRGFQ 763


>gi|169836389|ref|ZP_02869577.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 745

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 253/698 (36%), Positives = 389/698 (55%), Gaps = 16/698 (2%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           V+ +  +  L  E    V +   ++  YL Y++S I  RA+PD+RDG KPVHRRI+ +MS
Sbjct: 28  VEGMPKATDLSNE--ANVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMS 85

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           EMG+     FKKSARIVG+V+GK HPHGD SVY ++VR+AQ F  RY LI G GNFG+ID
Sbjct: 86  EMGMSHKTPFKKSARIVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSID 145

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEARM ++ E +L  + +D +D+R  ++E   EPVV P+K PNLL NG +G
Sbjct: 146 GDEAAAMRYTEARMAKITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANG 205

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +  +ALIDNPEISI++L+ YI GPDFPTGG I+  ++ I ++
Sbjct: 206 IAVGMATNIPPHNLGEVVDGIVALIDNPEISIDELIGYIKGPDFPTGG-IINGKQGIYDA 264

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ GRG  RV  R  +E    G   IVVTE+PYQV KSRLIEKIA+L+  K++  + D+R
Sbjct: 265 YKTGRGKLRVAGRVEIETSKTGRKSIVVTELPYQVNKSRLIEKIADLVKQKKLTGISDLR 324

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DE+  D   ++    +  + +L++ S++  +D++  F + M  L     P+V+ L  +L+
Sbjct: 325 DETDRDGIRIVIELKKGEESELILNSLYKFTDLQNTFGVIMLALVD-NAPRVLNLKQVLQ 383

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VS 419
           ++L HR EV+ RR+ F ++    R  IL+G  IA  NI+E+I IIR            + 
Sbjct: 384 KYLEHRFEVITRRTEFELKKARNRAHILEGFKIALDNIEEVIRIIRASKDANVARVELID 443

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F  +E Q  AIL++RL+ L  LE  +I  E + L+   EK+  +L+   + +  I  E 
Sbjct: 444 KFEFSEIQAKAILDMRLQRLTGLERDKINQEYNELMQLIEKLMGILSDDSKIYGIIKEEA 503

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            ++KE F        R               +  +   E   V        RS K   + 
Sbjct: 504 LKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYRSQKRGGIG 563

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           ++A +  E D +K    A   D +L+ +T GK +++    +     +  G+ I  +I+L+
Sbjct: 564 VNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKLIGNIINLD 623

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           +++ + T      ++    L  V+  G     E +      + GK  ++++ ++++  + 
Sbjct: 624 NDEKVSTIIKVREFEKNRNLFFVTRNGVVKKSELTLFSNIMKAGKRAIRLNDDDEVMFIG 683

Query: 655 KVTG---DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             +G   D +     N   + FS   +  M     GVR
Sbjct: 684 LTSGSGEDEIFAATRNGIAIKFSEKDVRSMGTSAVGVR 721



 Score = 44.0 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 2/47 (4%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           I +    +    + Y +          KRGG+G             +
Sbjct: 531 IKDEEVVVTLTEKGYVKRVAIDTYRSQKRGGIGVNATNTVE--DDVV 575


>gi|320160497|ref|YP_004173721.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
 gi|319994350|dbj|BAJ63121.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
          Length = 981

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 234/756 (30%), Positives = 377/756 (49%), Gaps = 33/756 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK V +   +++ YL YA+S I  RA+PD RDG KPV RRI++AM +MGL   A ++KSA
Sbjct: 6   VKRVDIDQEMQQSYLDYAMSVIVARALPDARDGLKPVQRRILYAMHDMGLGPDAGYRKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEV+GK HPHGD +VY+++ RLAQ F  RYPL+ GQGNFG+IDGD  AA RYTEAR+
Sbjct: 66  RIVGEVLGKYHPHGDVAVYEAMARLAQDFTMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ A  +L  +D + VDF D ++    EP V P+  PNLL NG +GIAVGMAT+IP HN+
Sbjct: 126 TRFAVDLLAQIDRNTVDFADNFDGTLREPTVLPAAIPNLLVNGANGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRE--SIVESYRLGRGGF 250
            E+ +A   ++D      EI +  L+ +I GPDFPTGGI++++ E   ++ +Y  G+G  
Sbjct: 186 CEVVDALAFMLDEWERLDEIGVPDLMRFIKGPDFPTGGILLQNVEDGGLLAAYGSGKGRI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R +   E++GRG   +++TE+PYQ  K+ LIE+IAEL+    +  + D+RDES     
Sbjct: 246 LIRGKVHAEDLGRGRTRLIITELPYQTNKTSLIERIAELVREGVLESISDLRDESDRQGM 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  + +  + +++  + +++ F + +  L     P+++ L   L+ +L HR  
Sbjct: 306 RIVIELKQGAEVETTIRTLYHRTPLQSTFGIILLALVD-GEPRLLTLKQALRVFLEHRIV 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RRS + +     R  IL+GL +A  N+DE+I +IRN       +  ++ RF L+E Q
Sbjct: 365 VVRRRSEYDLARARHRAHILEGLRVALKNLDEVIQLIRNAPDAEQARTRLMKRFKLSEIQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L  LE  +I+ E   + A+ + ++SLL S K+    +  E+ ++KE + 
Sbjct: 425 AQAILDMQLRRLASLERKKIEEEYREVTAQIKALESLLASAKKIRLAVKEELLKMKEQYG 484

Query: 488 KSTDLGRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
                 RRRT    +       +      M   + + V +   G +       +  +   
Sbjct: 485 D-----RRRTQIVTLEGETAIHQFLTADEMAPADKVWVGVMADGRVGRTAGEGLPATPAL 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
                S +  L            + G    +           G  +     L+    +V 
Sbjct: 540 HCLRASTRAVLILANAQGQASALSVGALPVVERWQ------DGMPLHKASALSEGDRVVL 593

Query: 605 AFVYDS-----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
           A   +         LL V+           E+   + +  T +KV+ E+++   V   G 
Sbjct: 594 ALALEPDDPKTDRYLLTVTRNALVKKSSLEELPGPSAQKFTLVKVNPEDELLTGVVTEGQ 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++      + FS  ++  M     GV      +G     +     E    + +   
Sbjct: 654 DEVLLLTAGGMAIRFSESEVRPMGLVAAGVLGMKLTEGDQVSGLVLNPQEKD-ILFACSD 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                       L  R G G L  +   R  + + +
Sbjct: 713 GTTGRIAGADFPLQGRYGQGVLATRVS-RGAEVVGA 747


>gi|154686224|ref|YP_001421385.1| DNA topoisomerase IV subunit A [Bacillus amyloliquefaciens FZB42]
 gi|154352075|gb|ABS74154.1| ParC [Bacillus amyloliquefaciens FZB42]
          Length = 807

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 220/748 (29%), Positives = 388/748 (51%), Gaps = 23/748 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+
Sbjct: 4   PELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSSIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +A +  I++P+ +++ L++ I GPDFPTGG I++  + I ++Y  G+G   +R
Sbjct: 184 HHLGEVIDAVIKRIESPDCTVDDLMQVIKGPDFPTGG-IIQGVDGIRKAYETGKGKIIIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  VE V  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+
Sbjct: 243 GKAEVESVRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D   ++  ++  +D++T +     V    R P +M L  IL  +++H++EV+ 
Sbjct: 303 VELKKEADAKGILNFLYKNTDLQTTYNF-NMVAIHNRRPMLMSLTAILDAYISHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDA 430
            RS F +Q    R  I++GL+ A   +DE+IA+IR     K     ++S+F+ TE Q +A
Sbjct: 362 NRSVFELQKAKERHHIVEGLMKALSVLDEVIAVIRASSDKKDAKQNVMSKFTFTEPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +   +K E + L  + ++++++L+  K+    I   ++++K+ ++ S 
Sbjct: 422 IVSLQLYRLTNTDITALKEEAEELSKKIQELEAILSHDKKLLKVITSSLKKLKKTYADS- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R +  E    +     + M+  E + V ++  G+++     S    +      K+
Sbjct: 481 -----RRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVKRTSQRSFAASNGQDFGMKD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D L      +TTD +LL +  G     P   L   R       +  +I ++ ++ IV A
Sbjct: 536 TDRLIHQFEMNTTDVLLLFTNKGSYVYCPVHQLPDIRWKDMGQHVTNIITIDRDETIVKA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVT-GDH 660
                +D +  LL ++  G     E +   A    K    L +  ++++  V     G  
Sbjct: 596 IPVKEFDPSSYLLFMTKNGMVKRTEMTHYKAQRYSKALVALNLKGDDELIDVHVTDGGSQ 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +       L F  D++  +  R  GV+  + KDG    V    + E  + +    R  
Sbjct: 656 LFIATRLGYGLWFGEDEVNVVGARAAGVKGINVKDGDTV-VSGQILHETDSLVLVTQRGA 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            +  N        R   G ++ +   ++
Sbjct: 715 IKRMNLSEFEKTSRAKRGVIMLRELKKN 742


>gi|71042522|pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
          Length = 716

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 263/724 (36%), Positives = 433/724 (59%), Gaps = 25/724 (3%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
            +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++
Sbjct: 1   MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L  + +   D+   
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ALID P+ ++++L
Sbjct: 121 FDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQL 180

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           L+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W  E+       +V++ +P+QV
Sbjct: 181 LDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQV 235

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDM 335
             +R++E+IA  +  K++P+++D+RDES  +   R+V+ P++  +D D +M  +F  +D+
Sbjct: 236 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDL 295

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           E  + +N+N++ +   P V  L  IL EWL  RR+ + RR ++R++ + +R+ IL+GLL+
Sbjct: 296 EKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLV 355

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE +I+ E   L 
Sbjct: 356 AFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELE 415

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            E++++  +L S ++  N +  E++   + +        RR+   E   A KA  +  M+
Sbjct: 416 KERDQLQGILASERKMNNLLKKELQADAQAYGD-----DRRSPLQEREEA-KAMSEHDML 469

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   ++ + + G++Y +
Sbjct: 470 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAI 529

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               L S RG GE +   + L     +    +     KLL+ S  G  F+   ++++A  
Sbjct: 530 DPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN 589

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK 693
           R GK  + +     +   V +    D +  + +  ++L+F +  +P++S+GKG ++ +  
Sbjct: 590 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 649

Query: 694 -------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                  + G++ +        LT      R       +L    G+RG  G+ + +G  R
Sbjct: 650 SAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIKLRPEELQKVTGERGRRGT-LMRGLQR 707

Query: 747 SGKF 750
             + 
Sbjct: 708 IDRV 711


>gi|254522337|ref|ZP_05134392.1| DNA topoisomerase IV, A subunit [Stenotrophomonas sp. SKA14]
 gi|219719928|gb|EED38453.1| DNA topoisomerase IV, A subunit [Stenotrophomonas sp. SKA14]
          Length = 747

 Score =  582 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 282/752 (37%), Positives = 436/752 (57%), Gaps = 21/752 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++     V    + + LR   E  YL Y++  + +RA+P + DG KPV RRII++MSE+G
Sbjct: 1   MTELARPVFHGFEQLPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  +  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAASKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNPE S+  L E++ GPD+P+   I+ +   +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLHLLDNPEASVRDLCEHVQGPDYPSSAEIITAASDLRNMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E     +  IVVT +P+QV  S++IE+IA  + AK++P LEDIRDE
Sbjct: 241 TGNGSVRARATFTKE-----ANNIVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F  +DME  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHANPVRVVLVPRSNRVDAEQLMGHLFATTDMERSYRVNLNVIGLDGRPQVKNLKMLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+Q ++RR+ +L+GLL+A+LN+DE+I IIR ED+PK  +++RF 
Sbjct: 356 EWLTFRSNTVTRRLQHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAALIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+++Q + IL  +L+ L +LEE +I+ E D L  E+EKI  +L+S  +    I  E+   
Sbjct: 416 LSDDQAEYILETKLKQLARLEEMKIRGEQDELAKEREKILGILDSKAKLKKLIRDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   +   A      +  +  EP+TVV+S +GWIR+ K H VD SA
Sbjct: 476 AKKFGDA-----RRSPLVQRQAAQAIDETEL-VPSEPMTVVLSEKGWIRAAKGHDVDASA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +++GD+L+ A+ A +T ++  L ++G+AY+ P   L S RG+GE +            
Sbjct: 530 LSYRDGDALQGAVRARSTQQVAFLDSEGRAYSTPVHTLPSARGNGEPLTGRFSPAPGTSF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGD 659
           VT    +   + ++ SS G  F+     +I   + GK  L +S+   + +   V  V  D
Sbjct: 590 VTLASAEPETRFVLASSHGYGFVTRFENLIGRNKAGKAMLNLSAGSSVLIPSVVANVATD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVICFKICEGLTW-IDSA 715
            +  V  +  LL  + + +PE+ +GKG ++       ++    V    I  G T  + S 
Sbjct: 650 RIVAVTSSGNLLAIAANDLPELDKGKGNKIIEIPKAKLATERVVAIVAISPGQTLQVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R+     N+L  +LG R   G L+P+G+ + 
Sbjct: 710 QRTMGLKFNELDAYLGARATRGHLLPRGWQKV 741


>gi|194365062|ref|YP_002027672.1| DNA topoisomerase IV subunit A [Stenotrophomonas maltophilia
           R551-3]
 gi|194347866|gb|ACF50989.1| DNA topoisomerase IV, A subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 747

 Score =  582 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 279/752 (37%), Positives = 436/752 (57%), Gaps = 21/752 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++    V    + + LR   E  YL Y++  + +RA+P + DG KPV RRII++MSE+G
Sbjct: 1   MTDLARPVFHGFEQLPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  +  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAASKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNPE S+  L E++ GPD+P+   I+ +   +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLHLLDNPEASVRDLCEHVQGPDYPSSAEIITAANDLRNMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E     +  IVVT +P+QV  S++IE+IA  + AK++P LEDIRDE
Sbjct: 241 TGNGSVRARATFTKE-----ANNIVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F  +DME  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHANPVRVVLVPRSNRVDAEQLMGHLFATTDMERSYRVNLNVIGLDGRPQVKNLKMLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+Q ++RR+ +L+GLL+A+LN+DE+I IIR ED+PK  +++RF 
Sbjct: 356 EWLTFRSNTVTRRLQHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAALIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+++Q + IL  +L+ L +LEE +I+ E D L  E+EKI  +L+S  +    I  E+   
Sbjct: 416 LSDDQAEYILETKLKQLARLEEMKIRGEQDELAKEREKILGILDSKTKLKKLIRDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   +   A      +  +  EP+TVV+S +GWIR+ K H +D S 
Sbjct: 476 AKKFGDA-----RRSPLVQRQAAQAIDETEL-VPSEPMTVVMSEKGWIRAAKGHDIDAST 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +++GD+L+ A+ A +T ++  L ++G+AY+ P   L S RG+GE +            
Sbjct: 530 LSYRDGDALQGAVRARSTQQVAFLDSEGRAYSTPVHTLPSARGNGEPLTGRFSPAAGTSF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGD 659
           VT    +   + ++ S+ G  F+     +I   + GK  L +S+   +    +V  V  D
Sbjct: 590 VTLASAEPETRFVLASTHGYGFVTRFENLIGRNKAGKAMLNLSAGSTVLTPSVVANVATD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVICFKICEGLTW-IDSA 715
            +  V  +  LL  + + +PE+ +GKG ++       ++    V    I  G T  + S 
Sbjct: 650 RIVAVTSSGNLLAIAANDLPELDKGKGNKIIEIPKAKLATERVVAIVAISPGQTLQVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R+     N+L  +LG R   G L+P+G+ + 
Sbjct: 710 QRTMGLKFNELDAYLGARATRGHLLPRGWQKV 741


>gi|321309553|ref|YP_004191882.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1]
 gi|319801397|emb|CBY92043.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1]
          Length = 843

 Score =  582 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 241/764 (31%), Positives = 384/764 (50%), Gaps = 26/764 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L ++ +   SL   +E+ +L YA+S I  RA+PDL+DG KPVHRRII++  +  L   
Sbjct: 15  KSLEKDTIFDKSLSSEVEQSFLDYAMSVITARALPDLKDGLKPVHRRIIYSAYQEKLLNS 74

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           A FKKSA +VG V+G  HPHGD S+Y++LVR+AQ F  RYPLI GQGNFG+IDGDS AA 
Sbjct: 75  AKFKKSAALVGTVMGSYHPHGDSSIYEALVRMAQDFSLRYPLIEGQGNFGSIDGDSPAAM 134

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++ E  L G+DE+ VDF D Y++   EPVV P+  PNLL NG++GIAVG+AT
Sbjct: 135 RYTEARLSKLGEYFLDGIDEECVDFMDNYDQSKKEPVVLPTVVPNLLINGSTGIAVGLAT 194

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN++E+  A L LI NP  S   LL+YI GPDFPTGG I      + + +  G G 
Sbjct: 195 NIPPHNIREVLNAVLDLIKNPNFSELDLLQYITGPDFPTGGEIFR-YSGVRDYFSTGSGK 253

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI---------PLLED 300
           F +R++  VEE       +++ EIPY V+K+++IE I +LI   +            + +
Sbjct: 254 FILRSKIEVEE-QVKKNLLIIKEIPYGVKKTKIIEGIVKLIKPSKTGKVLVPLLADNIVE 312

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  +   ++      +   +++ +++  + ++T + +N+ VL     P+ + L  +
Sbjct: 313 IRDESNLEGIRLVIECRSDVPASVIINNLYKFTQLQTSYSVNLTVLVD-GKPERISLLQL 371

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LK +L H+ E+L RR+ F++  + +R+ IL+G L    +I E I +I   D P+  + +R
Sbjct: 372 LKLYLEHQLEMLRRRTIFQLAVLKKRIHILEGRLKISSDILEAIKLINTSDNPEEDLRAR 431

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           +SL++ Q+D I  L + SL+K+   +++ EL          +S+LNS  +     + ++ 
Sbjct: 432 YSLSDEQLDDIFRLTVGSLKKISISKLQEELVTKTDLSIFKESILNSDDKLREVFSEKLI 491

Query: 481 EVKEIFSKSTDLGRRRT-TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           E+++ F            +            +  +       +        +  K     
Sbjct: 492 ELRDKFGDDRRTRVNMEASGAIDYCELFHFQKTVISLSHRGYLSQRPLSTYKLHKRGGSG 551

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL---IDL 596
                  + D  K+ L  H  D +L  S  GK Y   A  +    G  +A         L
Sbjct: 552 KEGAFHYKDDKPKMFLVCHGKDDVLFFSDSGKVYKKKAYEMNLREGKNKATITYNVLPGL 611

Query: 597 NHNQDIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +  + IVT              LL  +SKG       S      + GK  + +   + +K
Sbjct: 612 SKGEKIVTIIALPEGSYGDNKYLLFATSKGLVKRCSMSLFEKINKNGKVAITLRDGDSLK 671

Query: 652 LVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+ +  D HV +  ++ +++ F   +I   SR   GV   +   G +         EG 
Sbjct: 672 FVITLENDSHVCLASDSGRMVKFLASEIRPSSRIASGVFGINVGSGELISASS--TYEGD 729

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGV-GSLVPKGFPRSGKFLS 752
             +  +     +        L KRG   G +  K   ++GK L+
Sbjct: 730 YVLSISELGKGKLTPVSEYSLVKRGKKVGLIAQKTTEKTGKVLA 773



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 63/191 (32%), Gaps = 10/191 (5%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K +     A+  ++GDSLK  +       + L S  G+     A  +        +    
Sbjct: 653 KINKNGKVAITLRDGDSLKFVITLENDSHVCLASDSGRMVKFLASEIRPSSRIA-SGVFG 711

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK-TFLKVSSEEKMKL 652
           I++   + I  +  Y     +L +S  G   +   SE     R  K   +   + EK   
Sbjct: 712 INVGSGELISASSTY-EGDYVLSISELGKGKLTPVSEYSLVKRGKKVGLIAQKTTEKTGK 770

Query: 653 VVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKI 705
           V+  T     D + ++    +   F +  I    R   GV L     K+  I     F+ 
Sbjct: 771 VLACTIVRESDEILLLTNQNRQNRFRVSDISVQGRSTSGVNLFKLENKERVIYFAKNFEQ 830

Query: 706 CEGLTWIDSAG 716
            E     D   
Sbjct: 831 EESDDLEDFTE 841


>gi|110808537|sp|Q7XZF7|GYRA_ORYSJ RecName: Full=Probable DNA gyrase subunit A,
           chloroplastic/mitochondrial; Flags: Precursor
          Length = 939

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 231/762 (30%), Positives = 377/762 (49%), Gaps = 35/762 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E V  V L     E Y+AYA+S +  RA+PD+RDG KPVHRRI++AM EMGL     F
Sbjct: 78  VKERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 137

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VY++LVR+AQ F  RYPL+ G GNFG+ID D  AA RYT
Sbjct: 138 RKCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYT 197

Query: 133 EARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           E R+  V       +D       VDF   ++    EP + P++ P+LL NG+SGIAVGMA
Sbjct: 198 ECRLD-VGCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMA 256

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +    +I+NPE ++++LLE + GPDFPTGG IV   + I+E+Y+ GRG
Sbjct: 257 TNIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIV-GNQGILEAYKTGRG 315

Query: 249 GFRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
              +R +  +E  +V      I++ E+PYQ  KS L+E+IAEL+  K +  + DIRDES 
Sbjct: 316 RVVMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESD 375

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                V+    R  DP +++ +++  + +++ F  NM  +     P++M L  IL+ ++ 
Sbjct: 376 RSGMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILD-GQPKLMGLKEILQAFID 434

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID---EIIAIIRNEDKPKPVMVSRFSL 423
            R  V+ RR+ F++     R  I++G++I   N+D   +II    N    +  ++  F L
Sbjct: 435 FRCSVIERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKEFGL 494

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q +A+L++ LR L  LE  +   E  +L  E  K++ LL++ K  +  I  E  ++K
Sbjct: 495 SDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEATDLK 554

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSA 542
             F+         +   EV   D    ++ ++       V              ++  S 
Sbjct: 555 NKFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSV 614

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQ 600
              +  D+    +   T D +L  S  G  Y+  A  +        G  +  L+ L+  +
Sbjct: 615 GKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGE 674

Query: 601 DIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I +    +       L++++  G    V  +   A    G   ++++  +++K V +  
Sbjct: 675 RITSIVPVNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCG 734

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT----- 710
            D  VA+  +N  +++ + +++  + R  +GV     K+G     +              
Sbjct: 735 DDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPATSHNMPETY 794

Query: 711 ----------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                      +  A     +         G    VG    K
Sbjct: 795 SRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYK 836



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 21/124 (16%)

Query: 614 LLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVA 662
           LL ++  G    V  +        R G    K+  +  +  V  V         + + V 
Sbjct: 805 LLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVV 864

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK---------ICEGLTWI 712
           +V ++  +    +  I   SR  +GV L   +  G                   E  + I
Sbjct: 865 LVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKIQSASLISAAEEEEEQDPESASLI 924

Query: 713 DSAG 716
             A 
Sbjct: 925 SEAE 928


>gi|163746265|ref|ZP_02153623.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45]
 gi|161380150|gb|EDQ04561.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45]
          Length = 889

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 244/815 (29%), Positives = 390/815 (47%), Gaps = 110/815 (13%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RAIPDLRDG KPVHRRI+ AM E G     +++KSAR VG+V+G+
Sbjct: 1   MRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHEKSYRKSARPVGDVMGQ 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + A  +L 
Sbjct: 61  YHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFLLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VD++D Y+ +  EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+ +A LA
Sbjct: 121 DIDKDTVDYQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI++P+++ E+L++Y+ GPDFPTGGI++  R    ++Y  GRG   +RA+  VEE+ +  
Sbjct: 181 LIEDPDLTSEQLIDYVPGPDFPTGGIML-GRSGARKAYLEGRGSVVIRAKTRVEEIRKDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
           W IV+ EIPYQV K+ +IEKIAE +  K+I  +  ++DES  +   V+    R    +++
Sbjct: 240 WAIVIDEIPYQVNKASMIEKIAEQVRDKKIEGISHVQDESDRNGVRVVVELKRDATAEVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           M  ++  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++ ++    
Sbjct: 300 MNQLYRFTPMQTYFGCNMLALN-GGRPEQLTLRKFLSYFIDFREDVVARRTAYLLRKARE 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDK-----------------------------PKPV 416
           R  IL GL +A  NIDE++A IR+                                    
Sbjct: 359 RSHILCGLAVAVTNIDEVVATIRSSTDASEAREKLMTRRWPAEDILPYIALIDDPTHTAN 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               ++L+E Q  AIL LRL+ L ++   ++  EL+ L ++ ++   +L S ++    I+
Sbjct: 419 DDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELASKIKEYLEILGSRERILGIIS 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+REV+E+F+       RRT   + S        + +I +E + V +++ G+I+     
Sbjct: 479 DELREVRELFAVP-----RRTEIVDWSGDMD---DEDLIAREDMVVTVTSGGYIKRTPLV 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGH 586
                +     +S +  KE D +     A+T  ++L  +TDG  Y L    L        
Sbjct: 531 DFRAQRRGGKGVSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGARTAK 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
           G+AI  ++ +     +      D         +++  +S G     + S+       GK 
Sbjct: 591 GKAIVNILPIPTGVSVAAIMPVDRDEKDWDDLQVVFATSAGTVRRNKLSDFTNVKSNGKI 650

Query: 641 FLKVS---SEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKD 694
            +K         +         D V +V +  + + F    +    SR   GVR      
Sbjct: 651 AMKFEGEHEGTTLINARIASNDDDVMLVTDAGRAIRFPATDVRIFNSRNSVGVRGIRLGK 710

Query: 695 GGISDVICFK-------------------------------------------------I 705
           G     +                                                     
Sbjct: 711 GDNLVSMSVIRHFEATSEERVAYLKQRRLMAGLTDDDSTDDEEEQVQAGQLSTERYAEMS 770

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                 +    +   +  +     +  RGG+G   
Sbjct: 771 AAEDLILTITAKGAGKVSSAHDYPVRGRGGMGVTA 805



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 24/100 (24%), Gaps = 5/100 (5%)

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           +++  +      D V  V     +    +       RG KGV     K+  +     F  
Sbjct: 504 DDEDLIAR---EDMVVTVTSGGYIKRTPLVDFRAQRRGGKGVSGMQTKEEDVVT-NLFVA 559

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 +                  G R   G  +    P
Sbjct: 560 NTHTQLLFFTTDGMVYKLKTWRLPQGARTAKGKAIVNILP 599



 Score = 44.8 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFL---KVSSEEKMKLVVKVT-GDHVAVVG 665
           +   +L +++KG   +    +     R G       K  +   +     V   D V +  
Sbjct: 772 AEDLILTITAKGAGKVSSAHDYPVRGRGGMGVTAWTKAMAHGPIVACFPVEMSDQVMLAT 831

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
              + +   ++ I   SR   GV++ S         + +   +G
Sbjct: 832 SKGQSIRVPVEGISFRSRSAGGVKVFSTGKNEEVVSVAWIADQG 875



 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 2/101 (1%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D IL ++  G      A +       G  +        +  IV  F  + + ++++ +SK
Sbjct: 774 DLILTITAKGAGKVSSAHDYPVRGRGGMGVTAWTKAMAHGPIVACFPVEMSDQVMLATSK 833

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           G +  V    I   +R   G         E++  V  +   
Sbjct: 834 GQSIRVPVEGISFRSRSAGGVKVFSTGKNEEVVSVAWIADQ 874


>gi|32129333|gb|AAP73860.1| putative DNA gyrase subunit [Oryza sativa Japonica Group]
          Length = 931

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 231/762 (30%), Positives = 377/762 (49%), Gaps = 35/762 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E V  V L     E Y+AYA+S +  RA+PD+RDG KPVHRRI++AM EMGL     F
Sbjct: 78  VKERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 137

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VY++LVR+AQ F  RYPL+ G GNFG+ID D  AA RYT
Sbjct: 138 RKCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYT 197

Query: 133 EARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           E R+  V       +D       VDF   ++    EP + P++ P+LL NG+SGIAVGMA
Sbjct: 198 ECRLD-VGCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMA 256

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +    +I+NPE ++++LLE + GPDFPTGG IV   + I+E+Y+ GRG
Sbjct: 257 TNIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIV-GNQGILEAYKTGRG 315

Query: 249 GFRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
              +R +  +E  +V      I++ E+PYQ  KS L+E+IAEL+  K +  + DIRDES 
Sbjct: 316 RVVMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESD 375

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                V+    R  DP +++ +++  + +++ F  NM  +     P++M L  IL+ ++ 
Sbjct: 376 RSGMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILD-GQPKLMGLKEILQAFID 434

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID---EIIAIIRNEDKPKPVMVSRFSL 423
            R  V+ RR+ F++     R  I++G++I   N+D   +II    N    +  ++  F L
Sbjct: 435 FRCSVIERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKEFGL 494

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q +A+L++ LR L  LE  +   E  +L  E  K++ LL++ K  +  I  E  ++K
Sbjct: 495 SDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEATDLK 554

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSA 542
             F+         +   EV   D    ++ ++       V              ++  S 
Sbjct: 555 NKFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSV 614

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQ 600
              +  D+    +   T D +L  S  G  Y+  A  +        G  +  L+ L+  +
Sbjct: 615 GKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGE 674

Query: 601 DIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I +    +       L++++  G    V  +   A    G   ++++  +++K V +  
Sbjct: 675 RITSIVPVNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCG 734

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT----- 710
            D  VA+  +N  +++ + +++  + R  +GV     K+G     +              
Sbjct: 735 DDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPATSHNMPETY 794

Query: 711 ----------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                      +  A     +         G    VG    K
Sbjct: 795 SRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYK 836



 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 21/124 (16%)

Query: 614 LLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVA 662
           LL ++  G    V  +        R G    K+  +  +  V  V         + + V 
Sbjct: 805 LLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVV 864

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK---------ICEGLTWI 712
           +V ++  +    +  I   SR  +GV L   +  G                   E  + I
Sbjct: 865 LVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKIQSASLISAAEEEEEQDPESASLI 924

Query: 713 DSAG 716
             A 
Sbjct: 925 SEAE 928


>gi|190573519|ref|YP_001971364.1| DNA topoisomerase IV subunit A [Stenotrophomonas maltophilia K279a]
 gi|190011441|emb|CAQ45059.1| putative DNA topoisomerase IV subunit A [Stenotrophomonas
           maltophilia K279a]
          Length = 747

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 282/752 (37%), Positives = 434/752 (57%), Gaps = 21/752 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++     V    + + LR   E  YL Y++  + +RA+P + DG KPV RRII++MSE+G
Sbjct: 1   MTELARPVFHGFEQLPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  +  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAASKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNP+ ++  L E++ GPD+P+   I+ +   +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLHLLDNPDATVRDLCEHVQGPDYPSSAEIITAANDLRNIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E     +  IVVT +P+QV  S++IE+IA  + AK++P LEDIRDE
Sbjct: 241 TGNGSVRARATFNKE-----ANNIVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D D LM  +F  +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHANPVRVVLVPRSNRVDADQLMGHLFATTDLERSYRVNLNVIGLDGRPQVKNLKMLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+Q ++RR+ +L+GLL+A+LN+DE+I IIR ED+PK  +++RF 
Sbjct: 356 EWLTFRSNTVTRRLQHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAALIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +L+ L +LEE +I+ E D L  E+EKI  +L+S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLKQLARLEEMKIRGEQDELAKEREKILGILDSKAKLKKLIRDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   +   A      +  +  EP+TVV+S +GWIR+ K H VD SA
Sbjct: 476 AKKFGDA-----RRSPLVQRQAAQAIDETEL-VPSEPMTVVLSEKGWIRAAKGHDVDASA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +++GD+L+ A+ A +T ++  L ++G+AY+ P   L S RG+GE +            
Sbjct: 530 LSYRDGDALQGAVRARSTQQVAFLDSEGRAYSTPVHTLPSARGNGEPLTGRFSPAAGTSF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGD 659
           VT    +   + ++ SS G  F+     +I   + GK  L +SS   +     V  V  D
Sbjct: 590 VTLASAEPDARFVLASSHGYGFVTRFENLIGRNKAGKAMLNLSSGSSVLTPSMVANVATD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVICFKICEGLTW-IDSA 715
            +  V  +  LL  + + +PE+ +GKG ++       ++    V    I  G T  + S 
Sbjct: 650 RIVAVTSSGNLLAIAANDLPELDKGKGNKIIEIPKAKLATERVVAIVAISPGQTLQVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R+     N+L  +LG R   G L+P+G+ + 
Sbjct: 710 QRTMGLKFNELDAYLGARATRGHLLPRGWQKV 741


>gi|242032527|ref|XP_002463658.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor]
 gi|241917512|gb|EER90656.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor]
          Length = 845

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 229/709 (32%), Positives = 372/709 (52%), Gaps = 17/709 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E +  V L     + Y++YA+S +  RA+PD+RDG KPVHRRI++AM EMGL     F
Sbjct: 92  VKERILPVELHKEATQAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 151

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VY+SLVR+AQ F  RYPL+ G GNFG++D D  AA RYT
Sbjct: 152 RKCARVVGEVLGKFHPHGDTAVYESLVRMAQDFSMRYPLVQGHGNFGSVDADPPAAMRYT 211

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E R+  +AE + L  ++ + VDF   ++    EP + P++ P+LL NG+SGIAVGMAT+I
Sbjct: 212 ECRLDSLAEAMFLTDLELNTVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNI 271

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +    +I NPE ++++LLE + GPDFPTGG I+   + I+E+Y+ GRG   
Sbjct: 272 PPHNLGELVDVLSVIIQNPEATLQELLECMPGPDFPTGGTIL-GNQGILEAYKSGRGRIV 330

Query: 252 VRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           VR +  +E  +       I++ EIPYQ  K+ L++KIAEL   K +  + DIRDES    
Sbjct: 331 VRGKTDIETIDEKSKRTAIIIKEIPYQTNKATLVQKIAELAEDKVLEGISDIRDESDRTG 390

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    RS DP +++ +++  + +++ F  NM  +     P++M L  IL+ +L  R 
Sbjct: 391 MRVVIELKRSADPAIVLNNLYRHTALQSSFSCNMVAILD-GQPKLMGLKEILQAFLDFRC 449

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ +++     R  I++G++I   N+D +I +IR            V  F L+E 
Sbjct: 450 SVIERRARYKLSQALERKHIVEGIVIGLDNLDAVIQMIRETSNHTAATGALVKEFDLSEK 509

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +A+L++ L+ L  LE  +   E   L  E  K++ LL+S +  +  I  E  ++K  F
Sbjct: 510 QAEALLDITLKRLTSLERKKFVDEAKILSEEISKLNELLSSKELIFQLIQQEAADLKNKF 569

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKSHSVDLSALH 544
           S         +  CEV   D    ++ +++   E       N          ++  S   
Sbjct: 570 STPRRSLIDDSVSCEVDDIDIIPNEEMLLKILSEKGYAKRMNPNTFSLQHRGTIGKSVGK 629

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDI 602
            +  DS    +   T D +L  S  G  Y+  A  +        G  +  L+ L+  + I
Sbjct: 630 MRLNDSTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRTATGTPLVQLLPLSDGERI 689

Query: 603 VTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +            L++++  G    V  +   +    G   +++   +++K V +   D
Sbjct: 690 TSIIPVSEFGEDQCLVMLTVNGYIKKVPLNAFSSIRSTGIISIQLVPGDELKWVRRCGND 749

Query: 660 H-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             VA+  +  ++++ S D++  + R  +GV     K+G     +     
Sbjct: 750 DLVALASQKGRVIVNSCDKLRALGRNTRGVYAMKLKEGDKMAAMDIIPA 798


>gi|160331337|ref|XP_001712376.1| gyrA [Hemiselmis andersenii]
 gi|159765824|gb|ABW98051.1| gyrA [Hemiselmis andersenii]
          Length = 877

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 222/766 (28%), Positives = 374/766 (48%), Gaps = 24/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I  +       +    L   +   Y+ YA+S I  RA+PD+RDG KPVHRRI+ AM+E+G
Sbjct: 48  IEGNAPESLGKIITTDLNSEMSRSYMEYAMSVIYGRALPDIRDGMKPVHRRILFAMNELG 107

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L+    F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R  LISG GNFG+ID D 
Sbjct: 108 LNPDTPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSILISGHGNFGSIDHDP 167

Query: 126 AAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE +++++++  +L+ + +   D+ + ++    EP V PS  P +L NG+SGIA
Sbjct: 168 PAAMRYTECKISKLSKEILLKDIGKKTTDYINNFDGSCYEPSVLPSMLPTILLNGSSGIA 227

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ EI  A   LI+ P++S +KLL+ I  PDFPTGG I+   +   + Y+
Sbjct: 228 VGMATNIPPHNLTEILRAVDGLIEEPQMSEKKLLKLIPAPDFPTGGSIL-GLQGCSKLYK 286

Query: 245 LGRGGFRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            G+G   VR +   E +          I++TE+P+Q+ K+ LI KIAEL+  K +  + D
Sbjct: 287 NGQGSIIVRGKTHFETILNYNRNERTAIIITELPFQLNKASLITKIAELVNEKILDGIVD 346

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   ++    +  + ++++ ++F  + ++T F  ++  L  G+ P  + L  +
Sbjct: 347 LRDESDRNGIRIVIELKKDTNKEVILNNLFKKTPLQTSFGGHILALV-GQQPATLSLKEL 405

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L  ++  R++ + RR  F +     +  ++KGL++   +I+ I+ ++R         +  
Sbjct: 406 LLLFIQFRKKTIRRRLQFELNDSIEKNHLIKGLILTLNSIEFILKVVRQSKNNTEAKIIL 465

Query: 421 F--SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               LT+NQ DAILN++LR L +LE  ++ +E + L    + +   L   ++    I  +
Sbjct: 466 MESGLTQNQSDAILNIQLRRLTRLESNKLNNEYEILNNTIKNLKKPLALPEELSKNIKKD 525

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK-EPITVVISNRGWIRSLKSHS 537
           + E+  +F          +         +     A I       +              +
Sbjct: 526 LFEISILFGMPRRTNVVHSETSGSIDEMEMIDNHATIVMVTKFFIKRMVVETFEPQTRGT 585

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
                +  +E D +      +  D IL +S +G A+   A  +   R   + + L   L 
Sbjct: 586 RGKKGVMIQEDDEISHFFSCNNHDTILCISQNGIAFAFRAYQIPISRRTAKGVALSAVLP 645

Query: 598 HNQD-----IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +        I+   V+ S   L++++  G             T +G T LKV  E+++  
Sbjct: 646 NITTGKISSIIPVSVFSSEKYLILLTKNGMIKKTPLIAFKNITARGLTVLKVGEEDELCW 705

Query: 653 VVKVT-GDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKIC- 706
           V K +  D + +  +N K L F  +  Q+    R  KGV+  +  K+  I D+       
Sbjct: 706 VRKCSLEDSILISTKNGKALRFLTNEKQLRATGRNSKGVKSITIEKNDTIIDMDVLSTSK 765

Query: 707 ---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
              +    +      + +  N     +  RGG G  V K   +   
Sbjct: 766 TKHQDCYILAITKNGFGKKINHSDFRIQNRGGKGVTVIKLQKKDND 811



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 103/354 (29%), Gaps = 28/354 (7%)

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
           + I + +  +  L       + + +          ++ +  ++       I  + + +  
Sbjct: 520 KNIKKDLFEISILFGMPRRTNVVHSETSGSIDEMEMIDNHATIVMVTKFFIKRMVVETFE 579

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                    +   +  + E       +       I+          +    + RR     
Sbjct: 580 PQTRGTRGKKGVMIQEDDEISHFFSCNNHDTILCISQNGIAFAFR-AYQIPISRRTAKGV 638

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------------DLSALHFK 546
            +S          +    P++V  S +  I   K+  +               L+ L   
Sbjct: 639 ALSAVLPNITTGKISSIIPVSVFSSEKYLILLTKNGMIKKTPLIAFKNITARGLTVLKVG 698

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI-QLLIDLNHNQDIVTA 605
           E D L         D IL+ + +GKA                +     I +  N  I+  
Sbjct: 699 EEDELCWVRKCSLEDSILISTKNGKALRFLTNEKQLRATGRNSKGVKSITIEKNDTIIDM 758

Query: 606 FVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKV--SSEEKMKLVVK 655
            V          C +L ++  G    +  S+     R GK  T +K+     +++  +  
Sbjct: 759 DVLSTSKTKHQDCYILAITKNGFGKKINHSDFRIQNRGGKGVTVIKLQKKDNDELLSLRF 818

Query: 656 V-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
                 + +  +N  +L   I+ I    +  +GV +Q   +G     +     +
Sbjct: 819 CVKEQEILMSTKNGTILRQKIEAITIQKKNARGVIVQKLMEGDYVSKVSLISEK 872


>gi|309785334|ref|ZP_07679965.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1617]
 gi|308926454|gb|EFP71930.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1617]
          Length = 726

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 262/724 (36%), Positives = 433/724 (59%), Gaps = 25/724 (3%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
            +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++
Sbjct: 1   MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L  + +   D+   
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ALID P+ ++++L
Sbjct: 121 FDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQL 180

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           L+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W  E+       +V++ +P+QV
Sbjct: 181 LDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQV 235

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDM 335
             +R++E+IA  +  K++P+++D+RDES  +   R+V+ P++  +D D +M  +F  +D+
Sbjct: 236 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDL 295

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           E  + +N+N++ +   P V  L  IL EWL  RR+ + RR ++R++ + +R+ IL+GLL+
Sbjct: 296 EKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLV 355

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE +I+ E   L 
Sbjct: 356 AFLNIDELIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRCEQSELE 415

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            E++++  +L S ++  N +  E++   + +        RR+   E   A KA  +  M+
Sbjct: 416 KERDQLQGILASERKMNNLLKKELQADAQAYGD-----DRRSPLQEREEA-KAMSEHDML 469

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   ++ + + G++Y +
Sbjct: 470 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAI 529

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               L S RG GE +   + L     +    +     KLL+ S  G  F+   ++++A  
Sbjct: 530 DPITLPSARGQGEPLTGKLTLPPGATVDHILMESDDQKLLMASDAGYGFVCTFNDLVARN 589

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK 693
           R GK  + +     +   V +    D +  + +  ++L+F +  +P++S+GKG ++ +  
Sbjct: 590 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 649

Query: 694 -------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                  + G++ +      +    I    R       +L    G+RG  G+ + +G  R
Sbjct: 650 SAEAARGEDGLAQLYVL-PSQSTLTIHVGKRKIKLRPEELQKVTGERGRRGT-LMRGLQR 707

Query: 747 SGKF 750
             + 
Sbjct: 708 IDRV 711


>gi|302391739|ref|YP_003827559.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501]
 gi|302203816|gb|ADL12494.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501]
          Length = 795

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 241/741 (32%), Positives = 397/741 (53%), Gaps = 26/741 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           ++E+ + +V +   ++E YL Y+LS I  RA+PD+RDG KPVHRRI++A  ++GL     
Sbjct: 1   MIEQEITSVPIEEKMKESYLNYSLSVIISRALPDVRDGLKPVHRRILYATKKLGLIPNKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARIVGEV+GK HPHGD +VYD++VR+AQ F QRY LI G GNFG+IDGDSAAA RY
Sbjct: 61  HKKSARIVGEVLGKYHPHGDAAVYDAMVRMAQYFSQRYKLIDGHGNFGSIDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+  ++E +L  ++++ ++F D ++    EP V PS+ PNLL NG+SGIAVGM+T I
Sbjct: 121 TEARLAPLSEELLADIEKETINFVDNFDGSLQEPTVLPSRVPNLLVNGSSGIAVGMSTDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+  A + L+++ +++IE L+EYI GPDFPTGG I+   + I ++YR G+G   
Sbjct: 181 PPHNLKEVISALIQLLEDQDLTIEDLMEYIPGPDFPTGGKII-GNDEIKKAYRTGKGRIT 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  +E+  R    IV+TEIPYQ+ K++LIE+IA  I   ++  + ++RDES +D   
Sbjct: 240 LRGKTKIEKRSRNCERIVITEIPYQLNKAKLIEEIANTIKKGKVDNVTNVRDESDQDGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       + ++++  ++  + ++T   +NM  L     P+VM L  IL+ +L  RREV
Sbjct: 300 IVIELKSKANTEIILNRLYKYTSLQTTQRINMLALVDQ-QPEVMDLKTILQHFLDFRREV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F +Q    R  IL GL  A  N+D++I+IIRN  KP   K  +  + ++++ Q 
Sbjct: 359 VTRRTEFELQKSKDRQHILLGLKEAIDNLDKVISIIRNSQKPSTAKKNLQDKLNVSKKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I  EL  L  + E ++S+LN  +   + I  E+ E+KE +  
Sbjct: 419 AAILDMKLQRLVSLERKKITEELTELKEKIEALNSILNEKEVMDDLIKKELIEIKEEYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                  R T      +     +  +I+ E I +  S   +++       D+  +   +G
Sbjct: 479 E------RKTEIITDESKAELDESDLIKNEDIVLSFSYNKYLKRTT----DIENIRAGKG 528

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D +   +   T D +L  +  G+ + L    +    G      +   + L  +++IV   
Sbjct: 529 DYITDIMTGTTRDDLLFFTNTGQVHILKTHKIPEHHGLSTGDPLSDYLKLPLDEEIVDIL 588

Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VA 662
           +         + + + +G        E    T      + ++ E+++       G   + 
Sbjct: 589 ILTDETKEKYITIATEEGLIKKTVGKEYET-TVSSIKAINLNEEDEVIGAKVTDGQQNLL 647

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYN 720
           +  +  + + FS D I +  R  KG +     +     VI F +       I +      
Sbjct: 648 LGTKGGQTIHFSEDSISDTGRNTKGSKGIDLAEND--KVISFNLTANSNYVITATADGRA 705

Query: 721 RSENDLLGWLGKRGGVGSLVP 741
              +     +  R G G    
Sbjct: 706 TRTDINAYQIQNRNGKGLKTL 726



 Score = 47.5 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 11/148 (7%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
            + LLL T G      + + +S  G        IDL  N  +++  +  ++  ++  ++ 
Sbjct: 643 QQNLLLGTKGGQTIHFSEDSISDTGRNTKGSKGIDLAENDKVISFNLTANSNYVITATAD 702

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEE-KMKLVVKVT-GDHVAVVGENRKLLIFSIDQI 678
           G A   + +      R GK    ++++  ++  ++  +  D +  V E  +L    + +I
Sbjct: 703 GRATRTDINAYQIQNRNGKGLKTLTNDSYEVIDIITASKEDKLLFVTEEGQLEEAPVSEI 762

Query: 679 PEMSR-GKGVRLQ----SYKDGGISDVI 701
            E  R G+            D  I +VI
Sbjct: 763 TETERVGR----MYTQFKLDDDKIKEVI 786


>gi|224539991|ref|ZP_03680530.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518381|gb|EEF87486.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 816

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 211/713 (29%), Positives = 361/713 (50%), Gaps = 21/713 (2%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I+  M  +G      +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY ++ GQG
Sbjct: 8   ILFGMMGLGNTSDKPYKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMVVDGQG 67

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           N+G++DGDSAAA RYTE R+ ++ E ++Q +D++ VD +  +++   EP V P++ PNLL
Sbjct: 68  NYGSVDGDSAAAMRYTECRLRKIGEDMMQDLDKETVDMQSNFDDSLQEPTVMPTRIPNLL 127

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG SGIAVGMAT++P+HN+ E+ +A +A I+N +I IE+L+ Y+  PDFPTGG I    
Sbjct: 128 VNGASGIAVGMATNMPTHNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTGGYIY-GM 186

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             + E+Y  GRG   +RAR  + E       IV+TEIPY V K+ LI+ IA+L   K+I 
Sbjct: 187 SGVREAYLTGRGRVIMRARAEI-ETSSTHDKIVITEIPYGVNKAELIKNIADLANDKKIE 245

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + +  DES  +   ++    R  +  +++  ++ ++ ++T F +N   L     P+++ 
Sbjct: 246 GISNANDESDREGMRIVIDIKRDANASVVLNKLYKMTLLQTSFSVNNVALVH-GRPRLLN 304

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           L  ++K ++ HR EV+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   
Sbjct: 305 LKDMIKYFVEHRHEVVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDA 364

Query: 417 M---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +   + RF LTE Q  AI+ +RLR L  L + Q+ +E + ++      + +L++ +    
Sbjct: 365 IVGLIERFQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEVMKMIAYYEEILSNDELCRK 424

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            I  E+ EVK  +          ++         A  +  +       +  +     R+ 
Sbjct: 425 VITDELIEVKAKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQ 484

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
               V       ++ D ++    A   + ++  +  GK Y L    +  G  + +  AIQ
Sbjct: 485 NRGGVGSKGTDTRDADFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQ 544

Query: 592 LLIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
            L++++ +  +             + ++  +L  +  G        +     + G   + 
Sbjct: 545 NLLNIDSDDAVNAYLRVKNLSDTDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAIT 604

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---IS 698
           +  ++++  V    GD  + +   N + + F    +  M R   GVR  +  + G   + 
Sbjct: 605 IREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQDEVV 664

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +IC K  E  T +  + + Y +  +        RGG G        ++GK +
Sbjct: 665 GMICIKDPEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLV 717


>gi|126736455|ref|ZP_01752196.1| DNA gyrase, A subunit [Roseobacter sp. CCS2]
 gi|126713993|gb|EBA10863.1| DNA gyrase, A subunit [Roseobacter sp. CCS2]
          Length = 914

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 254/834 (30%), Positives = 403/834 (48%), Gaps = 109/834 (13%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V++   L+  YL YA+S I  RAIPDLRDG KPVHRRII++M E G+    +++KSA+ 
Sbjct: 25  SVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITADKSYRKSAKS 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G  HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD AAA RYTE+R+ +
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLVDGQGNFGSMDGDGAAAMRYTESRLDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VA+ +   + +D VDF D Y+ ++ EP V P+++PN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 VAKYLTDDLLKDTVDFMDNYDGKEREPSVLPARYPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALID+P++SIE+++EYI  PDFPTGGII+  R    ++Y  GRG   VRA+  V
Sbjct: 205 VIDATLALIDSPDMSIEEMIEYIPAPDFPTGGIIL-GRTGARKAYIEGRGSVIVRAKTNV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ +I+KIAE    K+I  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRYAIVINEIPYQVNKAVMIDKIAEAAREKKIEGIAHVQDESDRNGVRVVIELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR++F
Sbjct: 324 DATAEVVLNQLFRFTPMQTYFGCNMLALN-GGKPEQLTLRAFLAYFIDFREDVVARRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------------------- 412
            ++    R  +L GL +A  NIDEI+A IR+                             
Sbjct: 383 ELRKARERAHVLCGLAVAVTNIDEIVATIRSSADATTAREKLMTRKWPAQDILEYIKLID 442

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL  L  +  +   +L S +
Sbjct: 443 DPTHTANEDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLEILGSRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ EV+++F+       RRT   + S   +    + +IEKE + V +++ G+
Sbjct: 503 RIMQIIRDELTEVRDLFAVP-----RRTEIVDWSGDME---DEDLIEKEDMVVTVTSGGY 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     LS++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 555 IKRTALADFRAQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
             S    G+AI  ++ +     I      D         +++  +S G     + S+   
Sbjct: 615 LGSRTAKGKAIVNILPIPPGVSIAAIMPVDRPEEEWDDLQVVFATSAGTVRRNKLSDFTN 674

Query: 634 NTRKGKTFLKVSSEE---KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
             R GK  +K   +     +         D V +V ++ + + F    +    SR   GV
Sbjct: 675 VMRNGKIAMKFEDDHAETTLINARIASNDDDVMLVTDSGRAIRFPATDVRVFNSRSSVGV 734

Query: 688 RLQSYKDGGISDVICFK------------------------------------------- 704
           R    +       +                                              
Sbjct: 735 RGIKLQGDDKVVSMSIIRHFKAEAEERAAYLKMRRAMAGLADDAETDDEEEAVAGAISQE 794

Query: 705 -----ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                       +    +   +  +     +  RGG+G        R G  ++S
Sbjct: 795 RYAEMSAAENLILTITAQGSGKLSSSHDYPVRGRGGMGVAAMDKAMRGGALVTS 848



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 5/105 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L ++++G+  +    +     R G     +        +     V   D + +V 
Sbjct: 802 AENLILTITAQGSGKLSSSHDYPVRGRGGMGVAAMDKAMRGGALVTSFPVEISDQIMLVT 861

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
              + +   I+ I   SRG  GV++     G     + +   +G 
Sbjct: 862 STGQSIRVPIEGISFRSRGAGGVKVFDTGKGETVVSVAWIADQGD 906



 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 66/240 (27%), Gaps = 58/240 (24%)

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
               +++  ++ G        +  +   +G+      D +    ++ A +  +   +++V
Sbjct: 650 WDDLQVVFATSAGTVRRNKLSDFTNVMRNGKIAMKFEDDHAETTLINARIASNDDDVMLV 709

Query: 618 SSKGNAFIVEESE---IIANTRKGKTFLKVSSEEKMKLVVKV------------------ 656
           +  G A     ++     + +  G   +K+  ++K+  +  +                  
Sbjct: 710 TDSGRAIRFPATDVRVFNSRSSVGVRGIKLQGDDKVVSMSIIRHFKAEAEERAAYLKMRR 769

Query: 657 --------------------------------TGDHVAVVGENRKLLIFSIDQIPEMSRG 684
                                             + +  +       + S    P   RG
Sbjct: 770 AMAGLADDAETDDEEEAVAGAISQERYAEMSAAENLILTITAQGSGKLSSSHDYPVRGRG 829

Query: 685 -KGVRLQS--YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
             GV       + G +      +I + +  + S G+S       +      RG  G  V 
Sbjct: 830 GMGVAAMDKAMRGGALVTSFPVEISDQIMLVTSTGQSIRVPIEGISFR--SRGAGGVKVF 887


>gi|321311454|ref|YP_004203741.1| DNA topoisomerase IV subunit A [Bacillus subtilis BSn5]
 gi|320017728|gb|ADV92714.1| DNA topoisomerase IV subunit A [Bacillus subtilis BSn5]
          Length = 806

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 214/754 (28%), Positives = 380/754 (50%), Gaps = 24/754 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+
Sbjct: 4   PELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSPIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +A +  I  P  S+++L+E I GPDFPTGGII    + I ++Y  G+G   +R
Sbjct: 184 HHLGEVIDAVIKRIQMPSCSVDELMEVIKGPDFPTGGIIQG-IDGIRKAYETGKGKIIIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E +  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+
Sbjct: 243 GKAEIETIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D   ++  ++  +D++  +     V    R P +M L  IL  ++ H++EV+ 
Sbjct: 303 IELKKEADAKGILNFLYKNTDLQITYNF-NMVAIHNRRPMLMSLPSILDAYIGHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
            RS + +Q    R  I++GL+ A   +DE+IA IR+    +    +   ++  TE Q +A
Sbjct: 362 NRSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +   +K E + L  + E+++S+L++ K+    I   ++ +K+ ++   
Sbjct: 422 IVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYAD-- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R +  E    +     + M+  E + V ++  G+++     S    +      K+
Sbjct: 480 ----TRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D +      +TTD +LL +  G     P   L   R          LI ++ ++ IV A
Sbjct: 536 TDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-H 660
                +D +  LL  +  G     E +   A    K    L +  E+++  V    G+  
Sbjct: 596 IPIKEFDPSAYLLFFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELIDVHVTNGESQ 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +       L F  D++  +  R  GV+  + K+     V    + +  + +    R  
Sbjct: 656 IFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFV-VSGEILQQSDSIVLFTQRGA 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
            +  +        R   G ++ +   ++  + ++
Sbjct: 715 VKRMSLSEFEKTSRAKRGVVMLRELKKNPHRVVA 748


>gi|110679940|ref|YP_682947.1| DNA gyrase subunit A [Roseobacter denitrificans OCh 114]
 gi|109456056|gb|ABG32261.1| DNA gyrase, A subunit [Roseobacter denitrificans OCh 114]
          Length = 905

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 254/838 (30%), Positives = 399/838 (47%), Gaps = 116/838 (13%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI+ AM E G      ++KSAR 
Sbjct: 12  SVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHDKPYRKSARP 71

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G+ HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM +
Sbjct: 72  VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 131

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +  EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 132 PAAYLLADIDKDTVDFQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 191

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALI+ P+++ E+L++Y+ GPDFPTGGI++  R    ++Y  GRG   +RA+  V
Sbjct: 192 VIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIML-GRGGARKAYLEGRGSVIIRAKTRV 250

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  W I+V EIPYQV K+ +IEKIAE +  K+I  +  ++DES  +   V+    R
Sbjct: 251 EEIRKDRWAIIVDEIPYQVNKATMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELKR 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               +++M  ++  + ++T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++
Sbjct: 311 DATAEVVMNQLYRFTPLQTYFGCNMLALN-GGRPEQLTLRKFLTYFIDFREDVVARRTAY 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------------------- 412
            ++    R  +L GL +A  NIDE++A IR                              
Sbjct: 370 LLRKARERSHVLCGLAVAVTNIDEVVATIRASADAAEAREKLMTRRWPAQDILPYIALID 429

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L ++   ++  EL+ L  + ++   +L S  
Sbjct: 430 DPTHTANDDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEELAGKIKEYLEILGSRD 489

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    IA E+REV+E+F+       RRT   + S   +    + +I +E + V ++  G+
Sbjct: 490 RIMGIIADELREVRELFAVP-----RRTEIVDWSGDME---DEDLIAREDMVVTVTQGGY 541

Query: 530 IRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+                LS    KE D +     A+T  ++L  +TDG AY L    L 
Sbjct: 542 IKRTPLADFRSQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLP 601

Query: 582 S--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D   K      ++  +S G       S+   
Sbjct: 602 QGARTSKGKAIVNILPIPQGVSIAAILPIDRDEKDWSQLQIVFATSAGTVRRNALSDFTN 661

Query: 634 NTRKGKTFLKVSSEE---KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
               GK  +K   E     +      +  D V +V  + + + F  + +    SR   GV
Sbjct: 662 VKSNGKIAMKFEDEHAETTLINARIASPDDDVMLVTASGRAIRFPSEDVRVFNSRSSVGV 721

Query: 688 RLQSYKDGGISDVICF-----------------------------KICEGLT-------- 710
           R            +                                  E  T        
Sbjct: 722 RGVKLSGHDKVVSMSVIRHFDATADERAAYLKMRRAMVGLTDDSETSDEDETSANATISP 781

Query: 711 ------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR---SGKFLSS 753
                        +        +  +     +  RGG+G      + +   +G+ ++S
Sbjct: 782 DRYAEMSAAENLILTLTAGGAGKLSSSHDYPVRGRGGMGVTA---WDKRMQTGQIVAS 836



 Score = 47.5 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 63/228 (27%), Gaps = 12/228 (5%)

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             +I  + ++  AE   I++ + S       +    R ++           R +      
Sbjct: 665 NGKIAMKFEDEHAETTLINARIASPDDDVMLVTASGRAIRFPSEDVRVFNSRSSVGVRGV 724

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           +        +M            R     ++   V L+       +    A    + DR 
Sbjct: 725 KLSGHDKVVSMSVIRHFDATADERAAYLKMRRAMVGLTDDSETSDEDETSANATISPDRY 784

Query: 564 L----------LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                       L+  G      + +       G  +           IV +F  +   +
Sbjct: 785 AEMSAAENLILTLTAGGAGKLSSSHDYPVRGRGGMGVTAWDKRMQTGQIVASFPVEMDDQ 844

Query: 614 LLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +++ +SKG +  V    I   +R   G         E++  V  +   
Sbjct: 845 IMLATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKGEEVVSVAWIADQ 892



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 34/106 (32%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVVKVT-GDHVAVVG 665
           +   +L +++ G   +    +     R G             ++     V   D + +  
Sbjct: 790 AENLILTLTAGGAGKLSSSHDYPVRGRGGMGVTAWDKRMQTGQIVASFPVEMDDQIMLAT 849

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
              + +   ++ I   SR   GV++ +   G     + +   +G  
Sbjct: 850 SKGQSIRVPVEGISFRSRSAGGVKVFNTGKGEEVVSVAWIADQGED 895


>gi|255321009|ref|ZP_05362182.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SK82]
 gi|262379901|ref|ZP_06073056.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens
           SH164]
 gi|255301973|gb|EET81217.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SK82]
 gi|262298095|gb|EEY86009.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens
           SH164]
          Length = 739

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 276/747 (36%), Positives = 435/747 (58%), Gaps = 19/747 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKHS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP I GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++Q +E++L  + +  V+++D ++    EPV  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSQYSEVLLSELGQGTVEWQDNFDGSLKEPVTLPARVPNILMNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP  S  KL EYI GPD PT   I+ S++ +++    GRG
Sbjct: 182 TDIPPHNLREVIKGTIALIRNPNTSEAKLAEYIPGPDLPTKAEIITSKDELLKIQSTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE- 307
            +R+RA + VE+       I++TE+PYQV  S++I +IA+ + AK++PL+ D+RDES   
Sbjct: 242 SYRMRAVYTVEK-----NEIIITELPYQVSGSKIITQIADQMQAKKLPLVSDLRDESDHV 296

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D D +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRVDADTVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRKILLEWIG 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R+E + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED PK V++  F + E 
Sbjct: 357 IRKETVTRRLQYHLNKIEKRLHILAGLLIAYLDIDTVIRIIREEDHPKAVLIQTFKIDET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KL+E +I+ E D L A    I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLQEMEIRQEQDELSARAALIREQLANPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A     +Q +I  EP+TV++S  GWIRS K   VD   L+++
Sbjct: 477 GDE-----RRSPIVEREGA-VQMREQDLIPAEPVTVILSEAGWIRSAKGADVDAEKLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         +  R+ +L   G++Y L   +L S RG GE +   +   +    +   
Sbjct: 531 AGDQYLSHASGKSNQRVYILDETGRSYALAINSLPSARGLGEPLSSKLSPANGVSFIQIL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVV 664
           V +   +++ +SSKG  F  +  ++  N + GK FL +    K    + V  D  H+A++
Sbjct: 591 VEEDDQEIIAISSKGYGFKTQAKQLDTNAKAGKAFLSIPEGGKAL-PLLVNPDCSHLALL 649

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSE 723
            +  +LL+  + ++P +++GKG +L   + D  +  +    + E +  I +  +  N   
Sbjct: 650 TDTGRLLVLPVSELPSLNKGKGNKLIQLEQDEQLLSMTTLNLNEIIQVI-AGQKILNIKP 708

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DL  +LGKR   G L+P+G+ +  + 
Sbjct: 709 GDLDKYLGKRASKGQLLPRGYQKVNRL 735


>gi|290243052|ref|YP_003494722.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
 gi|288945557|gb|ADC73255.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 823

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 220/752 (29%), Positives = 381/752 (50%), Gaps = 20/752 (2%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            + +   +   +  YA+S I +RA+PD RDG KPVHRRI+++M ++G+    A KKSAR+
Sbjct: 17  ELEIGNVMRSSFADYAMSVITDRALPDARDGLKPVHRRILYSMHQLGITHMVAHKKSARV 76

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD + YDS VR+AQ +  R+PLI GQGNFG+IDGD+AAA RYTE R+++
Sbjct: 77  VGDVLGKYHPHGDSACYDSAVRMAQHWAMRHPLIDGQGNFGSIDGDNAAAMRYTEMRLSK 136

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +   + ++ VDFRD ++  + EP V P  +PNLL NG+ GIAVGMATS+P HN++E
Sbjct: 137 LGTRLFADIQKNTVDFRDNFDGTEREPEVLPLTYPNLLVNGSEGIAVGMATSVPPHNLRE 196

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
             +A LA +DNPEI+  ++ +++ GPDFPTGG I+   +  +++   GRG  ++R++W V
Sbjct: 197 TADAFLAWLDNPEITTREIAQHMPGPDFPTGG-ILHDLDGYIQALDTGRGAVKLRSQWTV 255

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+  RG   +V+ +IPY V K++L+E+IAEL+  K+I  + D+RDES +    ++    R
Sbjct: 256 EDRPRGGSRLVIDQIPYAVNKAKLVEQIAELVREKKIEGVADLRDESNKKGIRIVLEIKR 315

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + + +   +  ++ +ET    N+  L  G+ P  + +  + + + AHR EV+ RR+ F
Sbjct: 316 EFEAEAIAFQLVTMTQLETSVRYNIMALV-GQTPMQLGVRDLFEHFRAHRIEVIQRRTQF 374

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLR 435
            +     R+ IL+GLL+A   +DE IA IR            +    +   Q  AIL+++
Sbjct: 375 DLDRALDRLHILEGLLMALDRLDETIATIRASADADEARGGLIDLLGIDVTQAQAILDMK 434

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  L+   I+ E D L AE   +  +L   ++Q   +  E+ ++ +  +        
Sbjct: 435 LQKLTGLQIQDIRDEHDRLTAEVADLRDILARSERQVEIMRTELLDLCDQHANERCTEID 494

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
            +     +          +I  +   +       +      +   S +   E D +    
Sbjct: 495 TSLSKVSAADLIPEEDVMLIGTQQGYLKRIAAKDMNRQNRGTKGRSIMSVGEDDLVTTFH 554

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDS---- 610
             H+ D ++ L+  G+ + + A ++       +           + ++V     D     
Sbjct: 555 AGHSHDTLIALTDSGQVHAIKAYDIPDTGLGNKGRHYRNVFEGVEGNVVAMLTVDGLESV 614

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH----VAVVG 665
           T  L++ +++G       S     TR+ G   + +   + +    +V+ D     V V  
Sbjct: 615 THSLVIFTAQGLVKRTPLSAYSNATRRGGIQGISLVEGDSIV-CARVSKDEPNESVIVAA 673

Query: 666 ENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT---WIDSAGRSYNR 721
           +N K + F +++   + R  +GVR  +  +            + L     +  + +   +
Sbjct: 674 DNAKAIRFGMEEARAIGRTSRGVRAMNLSEDARVVAGDIIHADDLEKAHLMVVSEKGLGK 733

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +       L  RGG G        RSG  +++
Sbjct: 734 ATPASEFRLQSRGGKGVTSYTPNKRSGPVVAA 765



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
               L+VVS KG       SE    +R GK          S   +   V   G  V +  
Sbjct: 719 EKAHLMVVSEKGLGKATPASEFRLQSRGGKGVTSYTPNKRSGPVVAATVLFEGADVVLFN 778

Query: 666 ENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
           +       +   +P   R   G  +   ++G + +V+     
Sbjct: 779 DQGGANRIAGSDVPHNGRATTGSAII--RNGSVRNVLAVPPP 818


>gi|220906791|ref|YP_002482102.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425]
 gi|219863402|gb|ACL43741.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425]
          Length = 839

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 250/769 (32%), Positives = 399/769 (51%), Gaps = 36/769 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V   +L   +E+ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K 
Sbjct: 14  KVIPTALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKC 73

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQSVYD+LVR+ Q F  RYPL+ G GNFG++D D  AA RYTE R
Sbjct: 74  ARVVGDVLGKYHPHGDQSVYDALVRMVQTFSSRYPLLDGHGNFGSVDNDPPAAMRYTETR 133

Query: 136 MTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ VA   +L  + E+ V+F   ++    EPVV PS+ P LL NG +GIAVGMAT+IP H
Sbjct: 134 LSPVAHQALLGEIGEETVEFMGNFDNSQQEPVVLPSQLPVLLLNGCAGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A +ALID P++S+++LLE + GPDFPTGGII+   E I E+Y  GRG   +RA
Sbjct: 194 NLAEVVDALIALIDRPDLSVDQLLELVPGPDFPTGGIIIG-TEGIREAYTTGRGSITLRA 252

Query: 255 RWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
              +EE+  G        I++TE+PYQV KS LIEKIAELI   RI  + D+RDES  + 
Sbjct: 253 VAQMEEMQPGRGRHRRPAIIITELPYQVNKSGLIEKIAELINQGRIEGIADLRDESDREG 312

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P  L++ ++  + ++T F + M  L     P+ M L  +L+ +L  R 
Sbjct: 313 MRIVIELKRETQPQPLLDQLYRQTQLQTNFGVIMLALVD-GQPRQMGLKELLEHFLNFRE 371

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
             L RR   ++     R+ +++GLL A  N+D +I ++R        K  + S  +L++ 
Sbjct: 372 HTLTRRYRHQLDQAQSRLHLVEGLLTALQNLDRVITLLREATDGSAAKQTLQSELNLSDR 431

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL++ LR L  LE+  +++E D L+ + +++++LL S  +    +  ++R +K  +
Sbjct: 432 QADAILSMPLRRLTGLEQQNLRTEHDQLVGQIQQLETLLGSRHELLKALKKDLRSLKRQY 491

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV--------------ISNRGWIRS 532
           +       +       S  + A   +  +E      V               S      +
Sbjct: 492 ADQRLTRIQTEAEPLPSVEELAADTEVTLELSQRGYVRCLRGGERGRRNQARSEGAKANN 551

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
            K+           + D +     A  +D +L+ +  GK Y +    +  G    + + L
Sbjct: 552 AKADPAQPEQPQELKKDLILYNPRAKLSDALLVFTQSGKGYRVDLTAMPLGDRRDKGVPL 611

Query: 593 LIDLN---HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  L      + IV  F      S  +L+++S++G A  +   +    T +G +  K+  
Sbjct: 612 VTLLPESAQQESIVAQFLCPPLPSEQQLVLLSAEGRAKRISLEDFAEVTARGLSVCKLKD 671

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICF 703
            + +  +  V  +  VA+     +LL F+ D+IP M R   G +     K   +   I  
Sbjct: 672 GDYLAWMGLVDSNSEVAIATSTGRLLRFASDEIPLMGRTTLGQQAIRLHKQERLVGAIVL 731

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  + L  +  + R Y +        LG+ G +G+   +   +     +
Sbjct: 732 QTYDNLLLV--SERGYGKRMPLNAVRLGRLGDLGTTAIQFVAKPDHLAA 778



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 6/168 (3%)

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
             K+GD L       +   + + ++ G+     A + +   G     Q  I L+  + +V
Sbjct: 668 KLKDGDYLAWMGLVDSNSEVAIATSTGRLLRF-ASDEIPLMGRTTLGQQAIRLHKQERLV 726

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLK-VSSEEKMKLVVKVTGD- 659
            A V  +   LL+VS +G    +  + +        G T ++ V+  + +  +     + 
Sbjct: 727 GAIVLQTYDNLLLVSERGYGKRMPLNAVRLGRLGDLGTTAIQFVAKPDHLAAIAPAPSNA 786

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
            V +  +  ++   S+ QIP   + G G  L + + G           
Sbjct: 787 EVMLFTDKNRMANLSLAQIPIWGKDGSGKLLLNLEVGEKLTSASVADP 834


>gi|284162534|ref|YP_003401157.1| DNA gyrase subunit alpha [Archaeoglobus profundus DSM 5631]
 gi|284012531|gb|ADB58484.1| DNA gyrase, A subunit [Archaeoglobus profundus DSM 5631]
          Length = 738

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 245/727 (33%), Positives = 377/727 (51%), Gaps = 51/727 (7%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   L++ YL YA+S I  RA+PD+RDG KPV RRI++AM EMGL       K AR+VG
Sbjct: 8   DIAEELKDAYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLTHDKPHVKCARVVG 67

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V+G  HPHGD  VY++LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTE R+T++A
Sbjct: 68  HVLGHYHPHGDAPVYEALVRMAQDFSMRYPLIDGQGNFGSIDGDEPAAMRYTECRLTEIA 127

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L+ +D++ VDF+  ++    EPVV P+K PNLL NG +GIAVGM T+IP HN++E+C
Sbjct: 128 EKMLEDIDKNTVDFQPNFDASKQEPVVLPAKIPNLLINGCTGIAVGMMTNIPPHNIREVC 187

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +A I NP ISIE+L+ +I GPDFPTGG ++  R+ I+E+YR G+G   +R +  VEE
Sbjct: 188 DGIIAYIKNPNISIEELMNFIKGPDFPTGG-VIVGRDGIIEAYRTGKGKIILRGKVDVEE 246

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  I++ EIPY V K++L+EKIA+LI   ++ L + +RDES  +   V+       
Sbjct: 247 DK-----IIIREIPYMVNKAKLVEKIADLIKKDKL-LAKTVRDESDREGIRVVIELKE-- 298

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           DP   ++ ++  + ++  F + M  L     P+++ L  ++  ++ HRREV+ R++ + +
Sbjct: 299 DPYSALKKLYDHTPLKVTFNVVMLALV-NNEPKLLNLKELIAHYVNHRREVVRRKAEYEL 357

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNLRLR 437
           +  + R  I++GL+ A   +DE+I +I+  D  K           +TE Q +AIL LRL+
Sbjct: 358 KKAEERNHIVEGLIRAIEKLDEVINLIKQSDSTKNAKEGLMKLLRITEKQAEAILQLRLQ 417

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L +LE   +  E + L    +++ S+L   K+    I  E+REVK  F        RRT
Sbjct: 418 MLTRLEYESLMKEFNELKGRIDELKSILADPKRVDEIIVEELREVKRKFGD-----NRRT 472

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
              +     +   +  +       +     G                     + KI L A
Sbjct: 473 EIIDKEILKEVVEEFGVAVTLDGQIKRFEIGKALR----------------SNPKILLRA 516

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
            +   ILL S+D KAY++ A ++         +   I     +  V A        ++++
Sbjct: 517 MSNLDILLFSSD-KAYSIHARDIPL---DFTPLSKFISAEKVETGVVA-----KGDVVIL 567

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
           S  GN   V   E     R G         E +          V +  +N  ++ F   +
Sbjct: 568 SKDGNIKKVRLEEFANAKRAGIIA-----GENIGFARLYEDGDVIIATKNGYIVRFRSSE 622

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           IPE  R  KGV+  + ++G   ++    I +G   +      Y +        L  RG +
Sbjct: 623 IPEYGRSAKGVKAITLREGD--EIAWMSIGKGDYVLILTRDGYAKKVPIDEFRLTNRGAM 680

Query: 737 GSLVPKG 743
           G    +G
Sbjct: 681 GVRGVRG 687


>gi|67921390|ref|ZP_00514908.1| DNA topoisomerase (ATP-hydrolyzing) [Crocosphaera watsonii WH 8501]
 gi|67856502|gb|EAM51743.1| DNA topoisomerase (ATP-hydrolyzing) [Crocosphaera watsonii WH 8501]
          Length = 838

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 232/783 (29%), Positives = 390/783 (49%), Gaps = 54/783 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K 
Sbjct: 12  EIIPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKC 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 131

Query: 136 MTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ +A+  +L  + E  VDF   ++    EPVV P++ PNLL NG +GIAVGMAT+IP H
Sbjct: 132 LSPIADQSMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + LIDNPE+S EKL + I GPDFPTGG I+ S + I E+YR G+G   VR 
Sbjct: 192 NLGEVVDGLIGLIDNPELSDEKLWKIIPGPDFPTGGEIINS-QGIEEAYRHGKGIIPVRG 250

Query: 255 RWCVEEVGRGSWC------IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              ++ +  G         I+VTE+PYQV KS  IEKIA+L+   R+  + DIRDES   
Sbjct: 251 VVKIQRMDVGKKRRKERTAIIVTELPYQVNKSAWIEKIADLVNNGRLDGIADIRDESDRT 310

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R      +++ ++  + ++  F   M  L     P  + L  +L+E+L  R
Sbjct: 311 GMRVVIELKRDAVAKTVLKELYKKTALQQNFGAIMLALLD-NQPCQLSLRQLLEEFLKFR 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            + L R+ +  +Q    R+ +L+GLLI         +I+    +    K       +L+E
Sbjct: 370 EDTLTRQYNNELQECQNRLHLLQGLLISLNDLDRTIDILRHAADGTTAKVQFQRDLNLSE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL + +R L  LE  ++++E D L  +  ++++LLN+  +    +  E+R +K  
Sbjct: 430 AQANAILAMPMRRLTGLERQKLQAESDELEGKINELETLLNNRPEFLKVLKKELRSLKRK 489

Query: 486 FSKSTDLGRRRTTFCE------------VSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           +        RRT   +             S+       +   +    T  ++    + + 
Sbjct: 490 YGD-----TRRTRIVQATAQKSSSTTTSTSQRKSTNKDKVESKSNQQTETVTQPFNLFTP 544

Query: 534 KSHSVDL--------------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           ++   +                     +      +      ++ ++++  GKAY +   +
Sbjct: 545 QTPPKNAILEMTYQGTICWRSPDDKIPDNHLPIYSEPIQEREQFVVITDIGKAYPVNVAD 604

Query: 580 LLSGRGHGEAIQLLIDLNHNQD----IVTAFVYD--STCKLLVVSSKGNAFIVEESEIIA 633
           +        ++  L+  +  +D    I   FV +      LL+++++G    ++ SE+  
Sbjct: 605 VPPIDIQPISLLSLLPKSAQRDSKKVISAFFVLENKENHDLLLLTNQGKIKRIQLSELDG 664

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRL 689
            T +G   +K+   + ++ +     G+ VA+   + ++L F +    I  M R  +G + 
Sbjct: 665 LTNRGLVLIKLKDNDYLEFISPTKEGEEVAIAMSSGRVLRFPVVDEVIHIMGRNAQGNQA 724

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
              + G    + C  + E  T +  +   Y +  N     + K G +G+   +   ++  
Sbjct: 725 LKLRYGENI-ISCVTLDENKTVLLVSKLGYAKRLNITGLRMTKLGDIGTQALQFAQKTDS 783

Query: 750 FLS 752
            L 
Sbjct: 784 LLG 786


>gi|262373914|ref|ZP_06067191.1| DNA topoisomerase IV, A subunit [Acinetobacter junii SH205]
 gi|262310925|gb|EEY92012.1| DNA topoisomerase IV, A subunit [Acinetobacter junii SH205]
          Length = 739

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 269/745 (36%), Positives = 434/745 (58%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKST 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NPE + EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +         IV+TE+PYQV  S++I +IA+ +IAK++PL+ D+RDES   
Sbjct: 242 SYRMRAVYTI-----DKNEIVITELPYQVSGSKVITQIADQMIAKKLPLVSDVRDESDHQ 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRVDAETVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + + 
Sbjct: 357 IRKQTVTRRLQYHLNKIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMQHFGIDDI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E + L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRREQEELEAKAAIIREQLANPESLKNLIINELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+     + A     +Q ++  E +TVV+S  GW+R+ K   VD + L+++
Sbjct: 477 GD-----DRRSPIVTRADA-VQIKEQDLMPAETVTVVLSEAGWVRAAKGGDVDAANLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  +L S RG GE +   +        +  F
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVSFIQVF 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
           + D   +LL VSS G  F  + +++  N + GK+FL V+ +     ++ +    HVA++ 
Sbjct: 591 IEDDASELLAVSSNGYGFKTQAAQLDTNAKAGKSFLTVADKATALPLLPIQQATHVAILS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L    +      +     + +  + +  +      +D
Sbjct: 651 SAGRLLIVDLTELPVLNKGKGNKLIQLDEKEQILSMTTLNLDEIIQVAAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  ++GKR   G L+P+G+ ++ + 
Sbjct: 711 LQKYIGKRATKGQLLPRGYQKANRL 735


>gi|52080435|ref|YP_079226.1| DNA topoisomerase IV subunit A [Bacillus licheniformis ATCC 14580]
 gi|52785814|ref|YP_091643.1| DNA topoisomerase IV subunit A [Bacillus licheniformis ATCC 14580]
 gi|319645606|ref|ZP_07999838.1| ParC protein [Bacillus sp. BT1B_CT2]
 gi|52003646|gb|AAU23588.1| subunit of DNA topoisomerase IV [Bacillus licheniformis ATCC 14580]
 gi|52348316|gb|AAU40950.1| ParC [Bacillus licheniformis ATCC 14580]
 gi|317392492|gb|EFV73287.1| ParC protein [Bacillus sp. BT1B_CT2]
          Length = 807

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 213/743 (28%), Positives = 383/743 (51%), Gaps = 23/743 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  +   F+K+A+
Sbjct: 8   HDLPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHAEGNTYDKNFRKAAK 67

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR+ 
Sbjct: 68  TVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLA 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ 
Sbjct: 128 AIASELLRDIDKETVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLG 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +  ID+P  S++ L+E++ GPDFPTGG I++ +E I ++Y  G+G   +R +  
Sbjct: 188 EVIDAVIKRIDSPNCSVDDLMEFVKGPDFPTGG-IIQGKEGIKKAYETGKGKIIIRGKAE 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +E +  G   IV+TEIP++V K+ L++K+ E  I +++  + ++RDE+      ++    
Sbjct: 247 IETIRGGRQQIVITEIPFEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIVIELK 306

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  D   ++  ++  +D++  +     V    R P +M L  IL  ++ H++EV+  RS 
Sbjct: 307 KEADAQGILNFLYKNTDLQIPYNF-NMVAIHNRRPMLMNLTSILDAYIGHQKEVITNRSQ 365

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNL 434
           + ++    R  I++GL+ A   +DE+IA IR+ +  +    +   +F+ TE Q +AI++L
Sbjct: 366 YELKKAKERHHIVEGLMKALSILDEVIATIRSSNDKRDAKNNLIEKFAFTEPQAEAIVSL 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L   +   ++ E   L  + ++++ +L++ K+    I   +++VK+ ++       
Sbjct: 426 QLYRLTNTDITALQEEAKELDQKIKELEEILSNDKKLLKVIKDSLKKVKKTYA------S 479

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSL 551
           +R +  E    +     + M+  E + V ++  G+I+     S    +      K+ D L
Sbjct: 480 QRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYIKRTSQRSFAASNGQDFGMKDTDRL 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAFV-- 607
              L  +TTD +LL +  G     P   L   R     + I  +I ++ ++ IV A    
Sbjct: 540 LCQLEMNTTDVLLLFTNKGSYVYCPVHQLPDIRWKDLGQHITNIISIDSDESIVKAIPVR 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664
            +  +  LL  +  G A   +  +  A    K    L +  ++++  V    G   + + 
Sbjct: 600 EFTESEYLLFFTKNGMAKRTQLMQYKAQRYSKALVALNLKGDDEVVDVHVTDGTKDLFIA 659

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
             +   L F+ D++  +  R  GV+  + KDG         + E    +    R   +  
Sbjct: 660 THSGYGLWFTEDEVSVVGARAAGVKGVNLKDGDFV-ASGQVLEEKDVLVLVTQRGSIKRM 718

Query: 724 NDLLGWLGKRGGVGSLVPKGFPR 746
           N        R   G L+ +   +
Sbjct: 719 NRSEFEKTSRAKRGVLMLRELKK 741


>gi|226952331|ref|ZP_03822795.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ATCC 27244]
 gi|226836943|gb|EEH69326.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ATCC 27244]
          Length = 739

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 272/745 (36%), Positives = 435/745 (58%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKST 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NPE + EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+R+ + VE+       IV+TE+PYQV  S++I +IA+ +IAK++PL+ DIRDES   
Sbjct: 242 SYRMRSIYTVEK-----NEIVITELPYQVSGSKVITQIADQMIAKKLPLVADIRDESDHK 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRVDAETVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + E 
Sbjct: 357 IRKQTVTRRLQYHLTKIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMQHFGIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E + L A+   I   L + +   + I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRREQEELEAKAAVIREQLANPESLKSLIINELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+     + A     +Q ++  E +TVV+S  GW+R+ K   VD + L+++
Sbjct: 477 GD-----DRRSPIVARAEA-VQIREQDLMPAETVTVVLSEAGWVRAAKGADVDAANLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  +L S RG GE +   +        +   
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDQKGRSYALPISSLPSARGLGEPLSSKLSPASGVSFIQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
           V D   +LLV SS G  F  + +++  N + GK FL V  + K   ++ +    HVA++ 
Sbjct: 591 VEDDANELLVASSNGYGFKTQATQLDTNAKAGKAFLTVMEKAKALPLLPIQQATHVAILS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
            + +LLI  + ++P +++GKG +L    +      +     + +  + +  +      +D
Sbjct: 651 SSGRLLIIDLAELPVLNKGKGNKLIQLDEKEQILSMTTLALDEIIQVAAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  +LGKR   G L+P+G+ ++ + 
Sbjct: 711 LQKYLGKRATKGQLLPRGYQKANRL 735


>gi|297519744|ref|ZP_06938130.1| DNA gyrase subunit A [Escherichia coli OP50]
          Length = 704

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 247/710 (34%), Positives = 370/710 (52%), Gaps = 50/710 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  V+E F           +         
Sbjct: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G 
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
                 +E       GK  +K+   +++  V   +G D V +     K++
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVV 704



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 17/178 (9%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  +   E      D+N    I           ++ +S +G       SE  A  R
Sbjct: 509 VREQFGDKRRTEITANSADINLEDLIT------QEDVVVTLSHQGYVKYQPLSEYEAQRR 562

Query: 637 --KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KG---VRL 689
             KGK+  ++  E+   +L+V  T DH+       ++    + Q+PE +RG +G   V L
Sbjct: 563 GGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNL 622

Query: 690 QSYKDGGISDVI--CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +       I    +  EG+    +      +          +    G +  K   
Sbjct: 623 LPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR--TAGKVAIKLVE 678


>gi|75252690|sp|Q5YLB5|GYRA_NICBE RecName: Full=DNA gyrase subunit A, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|38017093|gb|AAR07942.1| DNA gyrase A subunit [Nicotiana benthamiana]
          Length = 935

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 234/775 (30%), Positives = 380/775 (49%), Gaps = 36/775 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D   N +    E V    L     E Y++YA+S +  RA+PD+RDG KPVHRRI++AM E
Sbjct: 77  DRGENEDRNGGERVVLTELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHE 136

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL     +KK AR+VGEV+GK HPHGD +VYDSLVR+AQ F  R PLI G GNFG+ID 
Sbjct: 137 LGLSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDA 196

Query: 124 DSAAAYRYTEARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           D  AA RYTE R+  + E + L  ++++ VDF   ++    EP + P++ PNLL NG SG
Sbjct: 197 DPPAAMRYTECRLEALTESMLLADLEQNTVDFVPNFDNSQKEPSLLPARVPNLLLNGASG 256

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A  ALI NPE ++++LLEY+ GPDFPTGGII+ +   + E+
Sbjct: 257 IAVGMATNIPPHNLGELVDALSALIHNPEATLQELLEYMPGPDFPTGGIIMGNIGIL-EA 315

Query: 243 YRLGRGGFRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           +R GRG   +R +  +E  +       I++ EIPYQ  K+ L+EKIA+L+  K +  + D
Sbjct: 316 FRTGRGRVVIRGKTDIELLDSKTKRAAIIIQEIPYQTNKASLVEKIADLVENKILEGVSD 375

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES      ++    R  DP +++ +++ L+ +++ F     V  +   P++M L  +
Sbjct: 376 IRDESDRSGMRIVIELKRGSDPAIVLNNLYRLTALQSSFSC-NMVGILNGQPKLMGLKEL 434

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVM 417
           L+ +L  R  V+ RR+ F++     R  I++G+++   N+DE+I  IR           +
Sbjct: 435 LQAFLDFRCSVVERRARFKLSQAQERNHIVEGIIVGLDNLDEVINTIRKASSNALAAASL 494

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              F L+E Q +AIL++ LR L  LE  +   E  +L  +  K++ LL+S KQ    I  
Sbjct: 495 RKEFELSEKQAEAILDISLRRLTALERNKFVEEGKSLRTQISKLEELLSSKKQILQLIEE 554

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSH 536
           E  E+K  F          T   ++   D    ++ ++       V              
Sbjct: 555 EAIEIKNKFFNPRRSMLEDTDSGDLEDIDVIPNEEMLLAISEKGYVKRMKPDTFNLQNRG 614

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI 594
           ++  S    +  D++   L     D++L  S  G  Y+ PA  +        G  +  ++
Sbjct: 615 TIGKSVGKLRVNDAMSDFLVCRAHDKVLYFSDKGTVYSSPAYKIPECSRTAAGTPLVQIL 674

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L+  + I +      + +   L++++  G    V  +   +    G   +++  ++++K
Sbjct: 675 SLSDGERITSIIPVSEFAADQYLVMLTVNGYIKKVSLNYFASIRCTGIIAIQLVPDDELK 734

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC--- 706
            V   + +  VA+  +N  +++     I  + R  +G      K+G     +        
Sbjct: 735 WVKCCSNNDFVAMASQNGMVILTPCANIRALGRNTRGSVAMRLKEGDKVASMDIIPDALQ 794

Query: 707 -----------------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                            +G   +  +   Y +              VG    K  
Sbjct: 795 KELDKTLEVQQRQYRSMKGPWLLFVSESGYGKRVPVSRFRTSPLNRVGLFGYKFS 849



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 70/250 (28%), Gaps = 37/250 (14%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           G R T+   VS          +     I  V  N             + A+     D LK
Sbjct: 679 GERITSIIPVSEFAADQYLVMLTVNGYIKKVSLNYFASIRCT----GIIAIQLVPDDELK 734

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGN-------------LLSGRGHGEAIQLLIDLNHN 599
                   D + + S +G     P  N             +    G   A   +I     
Sbjct: 735 WVKCCSNNDFVAMASQNGMVILTPCANIRALGRNTRGSVAMRLKEGDKVASMDIIPDALQ 794

Query: 600 QDIVTAFVYDSTCK-------LLVVSSKGNAFIVEESEIIAN--TRKGKTFLKVSSEEKM 650
           +++                  LL VS  G    V  S    +   R G    K SSE+ +
Sbjct: 795 KELDKTLEVQQRQYRSMKGPWLLFVSESGYGKRVPVSRFRTSPLNRVGLFGYKFSSEDCL 854

Query: 651 KLVVKV---------TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISD 699
             V  V         + + V +V ++  +    +  I   SR  +GV L   +  G I  
Sbjct: 855 AAVFVVGFSLGEDGESDEQVVLVSQSGTVNRIKVRDISIQSRYARGVILMRLEHAGKIQS 914

Query: 700 VICFKICEGL 709
                  +  
Sbjct: 915 ASLISAADAD 924


>gi|188997085|ref|YP_001931336.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932152|gb|ACD66782.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 793

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 235/745 (31%), Positives = 388/745 (52%), Gaps = 23/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++K V +   ++  Y+ YA+S I  RAIPD+RDG KPV RRI+++M E+GL     +KK
Sbjct: 2   EDIKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGE +GK HPHGD SVYD+LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTEA
Sbjct: 62  SARVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A  +L+ +D++ VD    ++    EP V PSKFPNL+ NGT+GIAVG+ATSIP H
Sbjct: 122 RLTKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ EA   L + P+ +IE+L  +I GPDFPTGG+I  ++E +++ Y+  RG   ++ 
Sbjct: 182 NFTEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKG 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++      IV+ EIPYQV K  LI+KIAEL+   +   + D+RDES      ++ 
Sbjct: 242 KARIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  D + +++ ++  + +E  FP+N+ VL   + P+V+ L  +L+E++ HR E++ R
Sbjct: 302 ELKRDADAEKVLKKLYKSTPLEKNFPVNLTVLVD-KQPRVLNLKELLQEFIKHRIEIITR 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAI 431
           R+ F ++  + R+ I++GL+ A  N D++I I+R+            S+F+L+E Q +AI
Sbjct: 361 RTLFELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQARQLLTSQFNLSETQANAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL     LE  ++K E   L  + E+   +L+S  ++      E  E+   +     
Sbjct: 421 LDMRLSRFTSLETQKLKDESIELKQKIERYKQILSSDNEKIKVFIEETDELVRKYGD--- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS--HSVDLSALHFKEGD 549
             +R+TT                I      V                 ++  ++   EG+
Sbjct: 478 --QRKTTIATEKELTFKEHFMFAILNTGRIVNYKVEDETSKADILQRIINSLSISLTEGE 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            +        +  I   + DGKAY     +L  G         ++   +  +        
Sbjct: 536 KIVSIQEVEGSKPIAFFTKDGKAYWSLVIDLPKGEDKLNIEGEIVGTAYQGEG------- 588

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENR 668
              ++ +++ KG    + + +I   ++ G T + ++  +++ + V      ++ +  +N 
Sbjct: 589 EENRVFLITKKGIIKRMSDEDIFYKSQ-GHTVMPLNEGDELVVAVADRHPSYIGIYTKNA 647

Query: 669 KLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            LL+F  +++     + KGV      +        F +      + S    Y +      
Sbjct: 648 DLLLFERNEVRITGDKAKGVEAIDLDENDEV-AGAFFLNGHEYLLISTSFGYMKLVEKTE 706

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
             + KR   G L  K   +    +S
Sbjct: 707 FPIKKRAQKGLLAVK-LNKDDYVVS 730



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 6/122 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK 651
           IDL+ N ++  AF  +    LL+ +S G   +VE++E     R  KG   +K++ ++ + 
Sbjct: 670 IDLDENDEVAGAFFLNGHEYLLISTSFGYMKLVEKTEFPIKKRAQKGLLAVKLNKDDYVV 729

Query: 652 LVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++ V   D V +  ++ KLL   ID+  IP   R   G  L  ++   I +V+   + E
Sbjct: 730 SILPVNKSDEVLINTKHGKLLKLKIDKETIPVEKRTSLGKNLFKFEADRIVNVLKLPLFE 789

Query: 708 GL 709
             
Sbjct: 790 ES 791


>gi|269967070|ref|ZP_06181138.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
 gi|269828329|gb|EEZ82595.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
          Length = 697

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 242/702 (34%), Positives = 368/702 (52%), Gaps = 49/702 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVSAMLERAGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ F  +        +         A
Sbjct: 475 GEYKTLLEEIAELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         S +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I        +     + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDEFSEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
                ++       G   + +  ++ +  V    G+  + + 
Sbjct: 655 KKTPLNQFANVRSNGLIAVNLREDDSLIGVDITNGENEIMLF 696



 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 9/124 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKM-KLVVKVTGDHVAVVGENRKL 670
           ++ +S  G       S+  +  R  KGK+  K+  E+ + +L+V  T D++       K 
Sbjct: 539 VVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKT 598

Query: 671 LIFSIDQIPEMSR-GKG---VRLQSYKDGGISDVICFKIC--EGLTWIDSAGRSYNRSEN 724
               + Q+P  SR  +G   V +   ++G     I       E      + G    +   
Sbjct: 599 YRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDEFSEDKFIFMATGDGTVKKTP 658

Query: 725 DLLG 728
               
Sbjct: 659 LNQF 662


>gi|294648919|ref|ZP_06726373.1| DNA topoisomerase IV subunit A [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825208|gb|EFF83957.1| DNA topoisomerase IV subunit A [Acinetobacter haemolyticus ATCC
           19194]
          Length = 739

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 273/745 (36%), Positives = 435/745 (58%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKST 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NPE + EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+R+ + VE+       IV+TE+PYQV  S++I +IA+ +IAK++PL+ DIRDES   
Sbjct: 242 SYRMRSIYSVEK-----NEIVITELPYQVSGSKVITQIADQMIAKKLPLVADIRDESDHK 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRVDAETVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + E 
Sbjct: 357 IRKQTVTRRLQYHLTKIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMQHFGIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E + L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRREQEELEAKAAVIREQLANPESLKNLIITELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+     + A     +Q ++  E +TVV+S  GW+R+ K   VD + L+++
Sbjct: 477 GD-----DRRSPIVARAEA-VQIREQDLMPAETVTVVLSEAGWVRAAKGADVDAANLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  +L S RG GE +   +        +   
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDQKGRSYALPISSLPSARGLGEPLSSKLSPASGVSFIQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
           V D   +LLV SS G  F  + +++  N + GK FL V  + K   ++ +    HVA++ 
Sbjct: 591 VEDDANELLVASSNGYGFKTQATQLDTNAKAGKAFLTVMEKAKALPLLPIQQATHVAILS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
            + +LLI  + ++P +++GKG +L    +      +     + +  + +  +      +D
Sbjct: 651 SSGRLLIIDLAELPVLNKGKGNKLIQLDEKEQILSMTTLALDEIIQVAAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  +LGKR   G L+P+G+ ++ + 
Sbjct: 711 LQKYLGKRATKGQLLPRGYQKANRL 735


>gi|319653141|ref|ZP_08007243.1| hypothetical protein HMPREF1013_03858 [Bacillus sp. 2_A_57_CT2]
 gi|317395062|gb|EFV75798.1| hypothetical protein HMPREF1013_03858 [Bacillus sp. 2_A_57_CT2]
          Length = 816

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 220/756 (29%), Positives = 386/756 (51%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E  + + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F
Sbjct: 3   SAEKFRDLPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHVEGNTHEKGF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG VIG  HPHGD SVYD++VR++Q +  R  L+   GN G+IDGD  AA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKVRNLLVEMHGNNGSIDGDPPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ ++  +L+ +++  V+F   +++  SEP V P+ +PNLL NG++GI+ G AT IP
Sbjct: 123 EARLSALSSELLRDIEKRTVEFIPNFDDTSSEPTVLPAVYPNLLVNGSTGISAGYATDIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H++ EI +  +  +D P+ SI+ L+E+I GPDFPTGG I++  + I ++Y  GRG   V
Sbjct: 183 PHHLNEIIDGVILRMDKPDCSIDDLMEHIKGPDFPTGG-IIQGVDGIKKAYETGRGKIIV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +   E++  G   IV+TEIPY+V K+ L++KI E  + +++  + ++RDE+      +
Sbjct: 242 RGKAEFEDLRGGKKQIVITEIPYEVNKANLVKKIDEFRLDRKVEGIAEVRDETDRTGLRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  DP+ ++  ++  SD++  +     V    R P++M L  +L  ++ HR+EV+
Sbjct: 302 VIELKKDADPEGVLHYLYKNSDLQIPYNF-NMVAIHNRHPKLMGLRELLDAYIGHRKEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RRS F +Q  + R  I++GL+ A   +DE+I  IR     +    +   +F  TE Q +
Sbjct: 361 TRRSQFELQKAEARQHIVEGLMKALSILDEVITTIRASKDKRDAKDNLIAKFEFTEPQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   +++E ++L     ++ S+L S K+ ++ I  E+R+VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDITALRAEAEDLAKLIGELKSILESEKKLFSVIKKELRDVKKRFADE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T  E    +     + ++  E + V ++  G+++     S    +      K
Sbjct: 481 ------RRTRIEAEIEEIKINLEVLVASEDVIVTVTKEGYVKRTSQRSFAASNGQDFGMK 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVT 604
           + D L   L  +TTD +L+ +  G     P   L   R     + I  +I ++ N+ IV 
Sbjct: 535 DSDRLIAKLDMNTTDVLLVFTNKGNYLYCPVHQLPDIRWKDLGQHIANIIPIDRNESIVR 594

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-D 659
           A     +++   LL ++  G     E     A    K    + V   +++  V    G  
Sbjct: 595 AIPVKDFETEEYLLFMTKNGMVKKTELKAYKAQRYSKPLVAVNVKGTDEVLDVYLTDGTK 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGR 717
            + +       L F  +++  +  R  GV+  + KDG  ++     +  +  + +    R
Sbjct: 655 EIFLATHQGFGLWFHEEEVSIVGARAAGVKGINLKDGDFVAGAQLIEDQKEQSVVIVTQR 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
              +           R   G ++ +    +  + + 
Sbjct: 715 GSIKKMKLSEFERTSRAKRGVVMLRELKSNPHRIVG 750


>gi|282899477|ref|ZP_06307443.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
 gi|281195634|gb|EFA70565.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
          Length = 842

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 229/771 (29%), Positives = 361/771 (46%), Gaps = 61/771 (7%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK HPHGD +V
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVDEDAVD 153
           YD+LVR+AQ F  R PLI+G GNFG+ID D  AA RYTE R+  +    +LQ ++ + VD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F D ++    EP V PS+ P LL NG+SGIAVGMAT+IP HN+ E+ +  +ALI NPEI+
Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIYNPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV----GRGSWCIV 269
             +L++Y+ GPDFPTG  I+    +I E+Y  GRG   +R    +E +          I+
Sbjct: 181 DTQLMQYVHGPDFPTGAQIL-GTSAIKEAYTTGRGSITMRGLATIETIQQRNRPEREAII 239

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           +TE+PYQ  K+ LIEKIAEL+  K+I  + DIRDES  D   ++    R   P +++ ++
Sbjct: 240 ITELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNL 299

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + ++T F  NM  L     PQ++ L   L  +L  R E + RR+ ++++  + R  +
Sbjct: 300 YKQTPLQTNFGANMLALV-NGEPQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHL 358

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GLLIA  ++D II +IR+           ++ + L+E Q DAIL ++LR L  LE  +
Sbjct: 359 LQGLLIALAHLDSIINLIRSAPDAPTAKGELINSYGLSEVQADAILQIQLRRLTALEADK 418

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I+ E + L  +   +  +L+  ++    I  E  ++K  F+                   
Sbjct: 419 IRLEHEELQLQITDLRDILDRRERVLEIIETEAGQIKTQFATPRRTTITHAEGEIDDIDL 478

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
            A  +  ++  +   +         +    +   +    K+ D+++  L     D +L  
Sbjct: 479 IANEKVLILLTQQGYIKRMPVSTFEAQNRATRGKAGAKVKDDDTIEHFLTCCDHDSVLFF 538

Query: 567 STDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           S  G  Y+L A  +        G  I  ++ +   + I +      + S   L++++  G
Sbjct: 539 SDRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEEKITSIVSVSEFSSEEYLVMLTKGG 598

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQI 678
           N               G   + +   ++++ V +    D V +       + F    DQ+
Sbjct: 599 NIKKTALEAFSHIRANGLIAISLEEGDQLRWVRRAKPEDSVMIGSRQGMAIHFRCDNDQM 658

Query: 679 PEMSRG-KGVRLQSYKDGGISDVICFKICE------------------------------ 707
             + R  +GV+    K G     +                                    
Sbjct: 659 RPLGRATRGVKSMKLKTGDELIGMDILPAAILNTLNTDTEMEEEPTEVEELSDNIEETSN 718

Query: 708 ------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                       G   +      Y +        L  R G G    K   R
Sbjct: 719 IEIATGEPANILGPWVLIITIGGYGKRVPVGQFRLQNRAGQGLTATKFKNR 769



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSS---EEKMKLVVKVT-GDHVAVVGEN 667
           +L+++  G    V   +     R G   T  K  +   ++++  +  V   + + +    
Sbjct: 734 VLIITIGGYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVNPDEEIMMATNR 793

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             ++  SI+ I   SR   GVR+Q   +      +     +
Sbjct: 794 GIIIRQSINAISIQSRTATGVRVQKLDEDDAITGVAVVPPD 834


>gi|84685508|ref|ZP_01013406.1| DNA topoisomerase IV, A subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84666665|gb|EAQ13137.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 856

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 333/822 (40%), Positives = 464/822 (56%), Gaps = 77/822 (9%)

Query: 3   VDNISNSNTLVEENVKA--VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            +N++++    +  +      LR A+ +RYL YALSTI  RA+PD RDG KPVHRRI+ A
Sbjct: 37  SENMTDTVDDPDNPISEFAEPLRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILFA 96

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+ L+ G  F+KS++I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGN
Sbjct: 97  MRELRLNSGGRFRKSSKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGN 156

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+ AA RYTEARMT VAE +L+G+DEDAVDFR+ Y+    EPVV P+ FP+LLANG 
Sbjct: 157 IDGDNPAASRYTEARMTIVAEALLEGLDEDAVDFRENYDGTLREPVVLPATFPHLLANGA 216

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E+ +A L LI  P+   + LL YI GPDFPTGG+IVE RE+I 
Sbjct: 217 AGIAVGMATNIPPHNISELVDACLHLIKTPDARDDTLLNYIPGPDFPTGGVIVEPRENIA 276

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  R+R++W VE++GRG W I+VTEIPYQVQKS+LIEK+AE+I  K++PLL D
Sbjct: 277 EAYRTGRGSIRLRSKWEVEDLGRGQWQIIVTEIPYQVQKSKLIEKLAEVIQTKKVPLLAD 336

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESA+DVRIVL PK R+++P++LM  +F  SD+E RF LNMNVL  G  P+V  L  +
Sbjct: 337 VRDESADDVRIVLEPKTRNVEPEMLMGLLFRNSDLEVRFSLNMNVLIDGLTPKVCSLKEV 396

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+ +L  RREVL RRS  RM+ ID R+E+L+G +IA+LN+D +I IIR +D PK  ++  
Sbjct: 397 LRAFLDFRREVLIRRSQHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMYE 456

Query: 421 FSLTENQVDAILNLR----LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI- 475
                +Q            +  L  ++   ++   D      E I     SG      + 
Sbjct: 457 DWSRPHQDTIARATNEHDYVSPLAGIDVASLELREDETATAPEIITDNTGSGATPKRFVG 516

Query: 476 -ACEIREVK-EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE------------PIT 521
            +  + +V+ +          RR    E+ R   A +++    ++               
Sbjct: 517 RSEGLSDVQADAILNMRLRSLRRLEELELIRERDALMEERAGLEDLLDSEDLQWGRIGDE 576

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           +  + + + +   + +         E   + +          ++ S  G    +     L
Sbjct: 577 LKDAKKKFGKDYVAGARRTQFAEAAEVPDVPLEAMIEREPVTIVCSQMGWIRAMSGHVDL 636

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVY--------------------------------- 608
           +     +         H +      V+                                 
Sbjct: 637 TRDFKFKDGDGPRFAFHAETTDKIIVFAANGRFYTLGASNLPGGRGMGEPLRLMVDLPND 696

Query: 609 ---------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                        KL+V S  GN FIV E++++A T+ GK  L VS ++  KLV  V GD
Sbjct: 697 VEIIDMFVHAPDRKLIVASKGGNGFIVPEADVVAQTKNGKQVLNVS-DDVAKLVKPVAGD 755

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICEG 708
           HVAVV ENRKLL+F I ++PEM RGKGVRLQ Y            DGG+SD+  F +  G
Sbjct: 756 HVAVVSENRKLLVFPIAELPEMGRGKGVRLQKYGSARGRQGTLDLDGGLSDLTTFDLATG 815

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           L+W  +  R   R+E D+  W+GKR GVG + P GFP+S  F
Sbjct: 816 LSWAATGDR--TRTEVDMSPWIGKRAGVGKMPPHGFPKSNTF 855


>gi|114767275|ref|ZP_01446115.1| DNA gyrase subunit A [Pelagibaca bermudensis HTCC2601]
 gi|114540581|gb|EAU43654.1| DNA gyrase subunit A [Roseovarius sp. HTCC2601]
          Length = 905

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 249/835 (29%), Positives = 397/835 (47%), Gaps = 111/835 (13%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++ + E G      ++K A  V
Sbjct: 14  ISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTKSKPYRKCATAV 73

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G+ HPHGD +VYD+LVR+AQ F    PLI GQGNFG++DGD  AAYRYTE+R+ + 
Sbjct: 74  GDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAYRYTESRLERT 133

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D+D VDF   Y  E +EPVV P+++PN+L NG  GIAVGMAT IP HN+ E+
Sbjct: 134 AEALLEDIDKDTVDFVPNYANERNEPVVLPARYPNVLVNGAEGIAVGMATRIPPHNLGEV 193

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI+NP++S E+L+EYI  PDFPTGG+I+  R    ++Y  GRG   +RA+  +E
Sbjct: 194 IDATLALIENPDLSSEQLIEYIPAPDFPTGGVIL-GRSGARKAYLEGRGSVIIRAKTRIE 252

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ R  + IV+ EIPYQV K+ +IE+IAE +  K+I  +  ++DES      V+    R 
Sbjct: 253 EIKRDRYAIVIDEIPYQVNKATMIERIAESVRDKKIEGIAHVQDESDRSGVRVVIELKRD 312

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++  ++  + M+  F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++ 
Sbjct: 313 ATAEVVLNQLYRFTPMQVSFGCNMLALN-GGKPEQLTLRTFLTAFLDFREDVVARRTAYL 371

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------------------------- 412
           ++    R  IL GL +A  N+DE++A IR                               
Sbjct: 372 LRKARERSHILCGLAVAVANVDEVVATIRASVDASEAREKLMTRRWPAHEIAPYIQLIDD 431

Query: 413 --PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              K      ++L+E Q  AIL LRL+ L +L   ++  EL+ L  + ++   +L S ++
Sbjct: 432 PTHKMNEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILGSRER 491

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I+ E+  V++ F+       RRT   + +        + +IE+E + V ++  G+I
Sbjct: 492 IMEIISNEMTAVRDQFAVP-----RRTEIVDWAGDMD---DEDLIEREDMVVTVTQSGYI 543

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          K     LS    KE D +     A+T  ++L  +T G  Y L    L  
Sbjct: 544 KRTPLADYRSQKRGGKGLSGGGLKEDDVVTQLFVANTHTQLLFFTTAGMVYKLKCWRLPQ 603

Query: 583 --GRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
                 G+AI  ++ +     +      D         +++  +SKG+      S+    
Sbjct: 604 GGRTSKGKAIVNILPIPQGVSVAAIMPVDRPEEDWDDLQIVFATSKGSVRRNRLSDFTNV 663

Query: 635 TRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SR-GKGVR 688
            R GK  +K   +++   +         D V +V  + + + F +  +    SR   GVR
Sbjct: 664 MRNGKIAMKFEGDDEATRLINARICSEDDDVMLVTNSGRAIRFPVPDVRVFNSRNSTGVR 723

Query: 689 LQSYKDGGISDVICFK-------------------------------------------- 704
                +G     +                                               
Sbjct: 724 GVKLANGDEVVSMSVIRHFEAESDERASYLKMRRAMAGLADDAEAASDDDEGNADSLLSA 783

Query: 705 ------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                        +    +   +  +     +  RGG+G    +   R G+ ++S
Sbjct: 784 ERYAEMSAAENLLLTITAKGLGKLSSSHDYPIRGRGGMGVTAWEKSMRGGEIVAS 838



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 5/106 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK----VSSEEKMKLVVKVTGDHVAVVG 665
           +   LL +++KG   +    +     R G         +   E +        D + +  
Sbjct: 792 AENLLLTITAKGLGKLSSSHDYPIRGRGGMGVTAWEKSMRGGEIVASFPVEMEDQIMLAT 851

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
              + +   ++ I   SR   GV++ + ++G     + +   +G  
Sbjct: 852 STGQSIRVPVEGISFRSRSAGGVKVFNTREGETVVSVAWIADQGDE 897


>gi|119512306|ref|ZP_01631392.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414]
 gi|119463019|gb|EAW43970.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414]
          Length = 836

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 236/778 (30%), Positives = 391/778 (50%), Gaps = 38/778 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLPTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL+SG GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSCRYPLLSGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  ++   +L  + ++ V+F   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPISYEGMLAEIADETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  +ALID P++S +KL E I GPDFPTGG IV     I E+Y  G+G
Sbjct: 186 TNIPPHNLGELVDGLIALIDQPDLSDQKLWEIIPGPDFPTGGEIV-GDSGIREAYTSGKG 244

Query: 249 GFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              +R     EE+      +    I++TE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 245 SIVLRGVAKTEEIAPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNHGRLHGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R  +P  +++ ++  + +++ F   +  L     P+ + L  +L+E
Sbjct: 305 ESDREGMRVVIELKRDTNPQEVLQHLYHQTALQSNFGAILLALVD-GQPRQLSLRQMLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF-- 421
           +L  R + L RR S+ +   D R+ I+ GLL A   +D++I I+R+        +S    
Sbjct: 364 FLKFREQTLNRRYSYELGKADSRLHIVSGLLKALSQLDQLIEILRSAADGTTAKMSLCSR 423

Query: 422 -SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L+E+Q DAIL + LR L  LE+  ++ E + L  +   +  LL+  K+    +  ++R
Sbjct: 424 LDLSESQGDAILAMPLRRLTSLEQRNLQQEFEQLSEQIGSLQILLSDRKELLKTLKKDLR 483

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRG 528
            +K  ++          +  E ++            A  +         E + +  S+RG
Sbjct: 484 SLKRKYNNPRRTKLLARSSEEFAKVKGVEKLQITAAAIDSPNSPDAEPPEEVILDFSHRG 543

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR-ILLLSTDGKAYTLPAGNLLSGRGHG 587
           ++R L+       A +        I      TD+ +L++++ GK Y +  G++    G  
Sbjct: 544 YVRRLQPSGKKSKAENGLPDHDFIIQSDLTATDKELLVITSSGKVYPVNVGDIRPTTGRS 603

Query: 588 EAIQLLIDL------NHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKG 638
                LI +         + +V+  +        ++++++ +G    +   E+   TR+G
Sbjct: 604 PRGTPLITMLSSTAQGAQEAVVSRLILPENLETRQMVLLTKEGRIKRLTLGELTNLTRRG 663

Query: 639 KTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKD 694
            T LK+  ++++      T  +++ +     +LL F+ D   +P M R   G++      
Sbjct: 664 ITILKLKEDDELLFTQLTTPKENLILASSGGRLLKFAADDQQLPVMGRTAMGLQALRLLK 723

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                V C         +      Y +           RG +G+   K   ++    +
Sbjct: 724 -HQQMVGCVTAAGEDNLLLVTEEGYAKRLPVSNLKRADRGNIGTQSLKFASKTDNLAA 780



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 7/171 (4%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDL 596
             ++ L  KE D L         + ++L S+ G+     A +         A+ L  + L
Sbjct: 662 RGITILKLKEDDELLFTQLTTPKENLILASSGGRLLKFAADDQQLPVMGRTAMGLQALRL 721

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV--SSEEKMKL 652
             +Q +V          LL+V+ +G A  +  S +    R   G   LK    ++    +
Sbjct: 722 LKHQQMVGCVTAAGEDNLLLVTEEGYAKRLPVSNLKRADRGNIGTQSLKFASKTDNLAAM 781

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVI 701
           V  +    VA+V    +++   +D +P ++R GKG  +    +D  I  V+
Sbjct: 782 VQAIASAEVALVTNKDRVVRIPVDTVPILARDGKGESILDLNRDERIISVM 832


>gi|262370201|ref|ZP_06063528.1| DNA topoisomerase IV [Acinetobacter johnsonii SH046]
 gi|262315240|gb|EEY96280.1| DNA topoisomerase IV [Acinetobacter johnsonii SH046]
          Length = 739

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 263/745 (35%), Positives = 432/745 (57%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             L  +  +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TNLAHQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKHS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP I GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++Q +E++L  + +   D++D ++    EPV  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSQYSEVLLSELGQGTCDWQDNFDGSMKEPVTLPARIPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP +  EK+ EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPNLGDEKVAEYIPAPDLPTKAEIITPPEELLKIQSTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+R+ + +E+       IV+T++PYQV  S++I +IA+ + AK++PL+ D+RDES   
Sbjct: 242 SYRMRSVYRIEK-----NEIVITDLPYQVSGSKVISQIADQMQAKKLPLVSDVRDESDHQ 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +NMN++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNMNMIGADGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R+E + RR  + +  I++R+ IL GL+IAYLNIDE+I IIR E++PK  ++SRF++ + 
Sbjct: 357 IRKETVTRRLQYHLNKIEKRLHILGGLIIAYLNIDEVIRIIREEEQPKAELMSRFNIDDI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L +LEE +++ E + L A+   I   L + +     I  E+++  + +
Sbjct: 417 QAEAILELKLRHLARLEEMEMRREQEELEAKAALIREQLANPESLKALIINELKDDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+          A  +Q  +  +P+TVV+S  GWIRS K H VD   L+F+
Sbjct: 477 GD-----DRRSPIV-HRAEATAMSEQDFMPADPVTVVLSEAGWIRSAKGHEVDAENLNFR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         +  R+ +L   G++Y L   +L S RG GE +   +           F
Sbjct: 531 AGDQYLSHAQGKSNQRVYVLDESGRSYALAINSLPSARGLGEPLSSKLSPASGVGFKQVF 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVG 665
           + D   +++ +SSKG  F  +  ++  N + GK FL +  +  +  +  V    H+A++ 
Sbjct: 591 IADDETEVMALSSKGYGFKTQAKQLDTNAKAGKAFLTLPEKATVMPLTSVDQATHLALLT 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   ++      +     + +  + +  +      +D
Sbjct: 651 STGRLLILELSELPVLNKGKGNKLIQLEEKDQIVFMTRLTLDEILQVVAGQQQLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  ++GKR   G L+P+G+ ++ K 
Sbjct: 711 LQKYIGKRASKGQLLPRGYQKANKL 735


>gi|94502320|ref|ZP_01308795.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|161833641|ref|YP_001597837.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS]
 gi|94451125|gb|EAT14075.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|152206130|gb|ABS30440.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS]
          Length = 820

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 220/770 (28%), Positives = 387/770 (50%), Gaps = 46/770 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E G      
Sbjct: 2   IENEKMISINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKH 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG V+GK HPHGD SVYD++VR+AQ +  RY LI GQGNFG+ID D  AA RY
Sbjct: 62  YKKSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++ +++E +L  ++++ VD +  +++   EP+V P+  PNLL NG+SGIAVGMAT++
Sbjct: 122 TEIKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA  + IDN  I+IE+L++YI  PDFPTGG I+   E + E++  GRG   
Sbjct: 182 PPHNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGG-IIYGYEGVKEAFLTGRGKIL 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R++   E++     CI++ EIPYQ++K+  I K  EL+   R+  L  IRDES  +   
Sbjct: 241 LRSKVHFEKIKF-RTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++F   ++++  LL+ ++F  + +ET F +N   L     P  + L  ++K ++ HR  V
Sbjct: 300 IVFFLKKNVNKQLLLNNLFKETYLETSFSVNNIALV-NGKPTKLNLKYLIKHFVNHRHNV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQV 428
           + RR+ + +     R  I++G  +   +++ +I +I++    +   +   +++ L+E QV
Sbjct: 359 IIRRTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNKYKLSEIQV 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +IL L+L SL KLE  +IK E   L  +      +LN    Q   I  E++ +KE +  
Sbjct: 419 QSILELKLNSLTKLESEKIKEEFIKLNKKISSYKRILNDKFLQKKIIKKELKIIKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-------- 540
                 RRT        D   L+ ++   + + +  S  G+++    +   +        
Sbjct: 479 -----SRRTEI------DYLGLETSLEPNKQVVLTTSYDGYMKRTDLNEYKIKNIGVGGI 527

Query: 541 --SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
                +  + D +K  L A+T   +L  +  GK + L    +       +  AIQ LI +
Sbjct: 528 VNMGAYKLKKDFIKHILVANTHQYMLFFTEKGKCFWLRVFEIPEVYKTSKGRAIQNLIKI 587

Query: 597 NHNQDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           +    I ++ +              +++++  G        +     + G   +K+   +
Sbjct: 588 DKKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQYSKPNKNGINAIKIKKGD 647

Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS----YKDGGISDVIC 702
            +       G   + +  ++ K + FS   +  M+R   GV+  +         +  +IC
Sbjct: 648 ALIDAKLTNGKSEILIAVKSGKAIRFSESTVRPMTRITLGVKSITLSKLLSKDKVIGMIC 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +    +  +   + +  N            G        ++G  ++
Sbjct: 708 INDPKKEYILVISENGFVKISNLSHYRKT---DQGIKTINITSKTGCLVA 754



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 48/128 (37%), Gaps = 15/128 (11%)

Query: 595 DLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            L     ++     +      +LV+S  G   I   S     T +G   + ++S+    +
Sbjct: 695 KLLSKDKVIGMICINDPKKEYILVISENGFVKISNLSHY-RKTDQGIKTINITSKTGCLV 753

Query: 653 VVK--VTGDHVAVVGENRKLLIFSIDQ----IPEMS--RGKGVRLQSYKDGGISDVICFK 704
            +K  V  D + ++ ++   +   + +    +      +GKG++L + K    S +    
Sbjct: 754 AIKNVVNKDDIIIINQSGLTIRIPVTEIIVRVRATKGNKGKGIKLINLK----SKIASVA 809

Query: 705 ICEGLTWI 712
             +  + +
Sbjct: 810 KVDYDSIL 817


>gi|126737721|ref|ZP_01753451.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6]
 gi|126721114|gb|EBA17818.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6]
          Length = 868

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 258/816 (31%), Positives = 401/816 (49%), Gaps = 111/816 (13%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RAIPDLRDG KPVHRRI++AM E G     +++KSAR VG+V+GK HPHGD ++
Sbjct: 1   MSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKSYRKSARPVGDVMGKYHPHGDSAI 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + A  +L  +D++ VDF
Sbjct: 61  YDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFMLSDIDKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+ +A LALID+P+++ 
Sbjct: 121 QDNYDGKDQEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLTS 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           E+L+EY+ GPDFPTGG ++  R    ++Y  GRG   +R++  VEE+ +  + IVV EIP
Sbjct: 181 EQLIEYVPGPDFPTGG-VMLGRSGARKAYLEGRGSVIIRSKTRVEEIRKDRYAIVVDEIP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+ +IEKIAE +  KRI  +  ++DES  +   V+    R   P++++  +F  S 
Sbjct: 240 YQVNKASMIEKIAEQVREKRIEGVSHVQDESDRNGVRVVVELKRDATPEVVLNQLFRFSP 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++ ++    R  IL GL 
Sbjct: 300 MQTSFGCNMLALN-GGRPEQLTLRRFLTSFIDFREDVVARRTAYLLRKARERSHILCGLA 358

Query: 395 IAYLNIDEIIAIIRNEDK-----------------------------PKPVMVSRFSLTE 425
           +A  N+DE++A IR+                                 K    + ++L+E
Sbjct: 359 VAVSNVDEVVATIRSSADAAEARQKLMTRRWPASDIAGYIQLIDDPTHKMNEDATYNLSE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL LRL+ L ++   ++  EL+ L A+ ++   +L+S ++  + IA E+REV+E 
Sbjct: 419 TQARAILELRLQRLTQIGVKEVTDELEELAAKIKEYLDILSSRERIMSIIADELREVREQ 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       RRT   + S   +    + +IE+E + V +++ G+I+          K   
Sbjct: 479 FAVP-----RRTEIVDWSGDME---DEDLIEREDMVVTVTSGGYIKRTPLADFRAQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
             LS +  KE D +     A+T  ++L  +TDG  Y L    L      G G+AI  ++ 
Sbjct: 531 KGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAIVNILP 590

Query: 596 LNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE- 648
           +     I      D      +  +++  +S G       S+       GK  +K   E  
Sbjct: 591 IPTGVSIAAIMPVDRPDNEWADLQIVFATSAGTVRRNRLSDFTNVKSNGKIAMKFEEEHA 650

Query: 649 --KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVICF 703
             K+         D V +V    + + F   ++    SR   GVR     DG     +  
Sbjct: 651 ETKLINARICSEEDDVMLVTNTGRAIRFPTTEVRVFNSRNSVGVRGIKLGDGAEVVSMSV 710

Query: 704 K----------------------------------------------ICEGLTWIDSAGR 717
                                                          +      +     
Sbjct: 711 VRHFDAEPWERSAFIKRFRGELGNDVSDEETSEENEGALSEDRYQEMLAANDLLVTINKA 770

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +     +  RGG G    KG    G+ +++
Sbjct: 771 GAGNLTSAHDYRVSGRGGQGVGAMKG----GEIVAT 802



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 1/97 (1%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           +  +   L+ ++  G   +    +   + R G+    +   E +        D + +   
Sbjct: 757 MLAANDLLVTINKAGAGNLTSAHDYRVSGRGGQGVGAMKGGEIVATFPVTLEDQIMLATS 816

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             + +   +D I   SR   GVR+ +   G     + 
Sbjct: 817 KGQSIRVPVDGISFRSRSAGGVRVFNTGKGEEVVSVA 853



 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
           +IV  F      ++++ +SKG +  V    I   +R   G         E++  V  +  
Sbjct: 798 EIVATFPVTLEDQIMLATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGEEVVSVAWIAE 857

Query: 659 D 659
           +
Sbjct: 858 N 858


>gi|119897403|ref|YP_932616.1| DNA topoisomerase IV subunit A [Azoarcus sp. BH72]
 gi|119669816|emb|CAL93729.1| DNA topoisomerase IV subunit A [Azoarcus sp. BH72]
          Length = 801

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 274/753 (36%), Positives = 416/753 (55%), Gaps = 36/753 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L    E  YLAYA+S +K RA+P + DG KPV RRI++AM+EM L+  A   KSAR+V
Sbjct: 54  LPLDLYAERAYLAYAMSVVKSRALPQVEDGMKPVQRRILYAMNEMRLNATAKHVKSARVV 113

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD SVYD++VR+AQ F  RYPL+ GQGNFG+ DGDSAAA RYTE R+T +
Sbjct: 114 GDVIGKYHPHGDSSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTPI 173

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L  +D   VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E+
Sbjct: 174 AELLLSEIDRGTVDFVPNYDGAFEEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLREV 233

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA   LI +PE  ++ +L  + GPDFP GG ++ S E+I ++Y  GRG  R+RARW +E
Sbjct: 234 AEATCHLIRHPEAGLDDILPLLPGPDFPGGGQLISSPEAIRDAYAGGRGSLRMRARWRIE 293

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE------------ 307
           E+ RG W ++V E+P+ V  ++++ +I  L   +     +++  E  +            
Sbjct: 294 ELARGQWRVIVEELPHGVSAAQVLSEIETLTNPQPRAGKKEVSQEQKQLKQLVLGVLDTV 353

Query: 308 --------DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
                    VRIVL PK+     D  M  +   + +ET   +NM ++     PQ   L  
Sbjct: 354 RDESSDKAPVRIVLEPKSSRQSRDEFMAVLLAHTSLETSVSVNMTMIGRDGRPQQKNLVQ 413

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL+EW+  R   + RR+  R+  +DRR+ IL+G +IA+L+I+++I +IR  D+PKP +++
Sbjct: 414 ILREWIDFRYVTVERRTRHRLDEVDRRIHILEGRMIAFLHIEDVIRVIRESDEPKPALIA 473

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L++ Q + IL +RLR L +LE ++I+ EL+ L  E+E +  +L++       I  EI
Sbjct: 474 AFGLSDVQAEDILEIRLRQLARLEGFKIEKELNELKEEREGLQHVLDNRSAMTRLILKEI 533

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E  + +        RRT              +  +  EP+TV++S  GWIRS + H +D
Sbjct: 534 GEDTKKYGD-----DRRTLI---ETVAPIASAEISVADEPVTVILSKNGWIRSRQGHGLD 585

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +A+ +K GD     L   TT  ++++ T G+AYT+   +L  GRG G  I  L++    
Sbjct: 586 AAAISYKAGDFAFALLETRTTWPLIVIDTHGRAYTVKVSDLPGGRGDGVPIATLVEFQDG 645

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                    D     L  +S G  F+   ++  +  R GK F+ +   EK+    KV G+
Sbjct: 646 GKPAQVVSDDPATTWLFANSGGYGFLCSVADATSRQRAGKAFMALEKGEKVLAPAKVFGE 705

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            +A   EN ++L+F   ++   S G+GV + +  +G     +     + +  I+ AGR  
Sbjct: 706 WIAAGSENGRILVFPRAEMKTQSGGRGVIVMALDEGEALSAVAVPADDAVLTIEGAGRG- 764

Query: 720 NRSENDLLGWLG------KRGGVGS-LVPKGFP 745
            +S    L          +R   G+ L PK  P
Sbjct: 765 GKSTTVELKPAQREGLRHRRARKGAPLTPKVKP 797


>gi|237755473|ref|ZP_04584096.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692373|gb|EEP61358.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 793

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 233/745 (31%), Positives = 390/745 (52%), Gaps = 23/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++K V +   ++  Y+ YA+S I  RAIPD+RDG KPV RRI+++M E+GL     +KK
Sbjct: 2   EDIKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGE +GK HPHGD SVYD+LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTEA
Sbjct: 62  SARVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A  +L+ +D++ VD    ++    EP V PSKFPNL+ NGT+GIAVG+ATSIP H
Sbjct: 122 RLTKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ EA   L + P+ +IE+L  +I GPDFPTGG+I  ++E +++ Y+  RG   ++ 
Sbjct: 182 NFTEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKG 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++      IV+ EIPYQV K  LI+KIAEL+   +   + D+RDES      ++ 
Sbjct: 242 KARIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  D + +++ ++  + +E  FP+N+ VL   + P+V+ L  +L+E++ HR E++ R
Sbjct: 302 ELKRDADAEKVLKKLYKSTPLEKNFPVNLTVLVD-KQPRVLNLKELLQEFIKHRIEIITR 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++  + R+ I++GL+ A  N D++I I+R+       + ++ S+F+L+E Q +AI
Sbjct: 361 RTLFELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQARELLTSQFNLSETQANAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL     LE  ++K E   L  + E+   +L+S  ++      E  E+   +     
Sbjct: 421 LDMRLSRFTSLETQKLKDESTELKQKIERYKQILSSDDEKIKVFIEETDELVRKYGD--- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS--HSVDLSALHFKEGD 549
             +R+TT                I      V                 ++  ++   EG+
Sbjct: 478 --QRKTTIATEKELTFKEHFMFAILNTGRIVNYKVEDETSKADILQRIINSLSISLTEGE 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            +        +  I   + DGKAY     +L  G         ++   +  +        
Sbjct: 536 KIVSIQEVEGSKPIAFFTKDGKAYWSLVIDLPKGEDKLNIEGEIVGTAYQGEG------- 588

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENR 668
              ++ +++ KG    + + +I   ++ G   + ++  +++ + V      ++ +  +N 
Sbjct: 589 EENRVFLITKKGIIKRMSDEDIFYKSQ-GHMVMPLNEGDELVVAVADRHPSYIGIYTKNA 647

Query: 669 KLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            LL+F  +++     + KGV      +        F +      + S    Y +      
Sbjct: 648 DLLLFERNEVRITGDKAKGVEAIDLDENDEV-AGAFFLNGHEYLLVSTSFGYMKHVEKTE 706

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
             + KR   G +  K   +    +S
Sbjct: 707 FPIKKRAQKGLMAVK-LNKGDYVVS 730



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 6/122 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK 651
           IDL+ N ++  AF  +    LLV +S G    VE++E     R  KG   +K++  + + 
Sbjct: 670 IDLDENDEVAGAFFLNGHEYLLVSTSFGYMKHVEKTEFPIKKRAQKGLMAVKLNKGDYVV 729

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++ V   D V +  +  KLL   ID+  IP   R   G  L  ++   I +V+   + E
Sbjct: 730 SILPVNESDEVLINTKRGKLLKLKIDKEAIPIEKRTSLGKNLFRFEADRIVNVLKLPLFE 789

Query: 708 GL 709
             
Sbjct: 790 ES 791


>gi|325109095|ref|YP_004270163.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305]
 gi|324969363|gb|ADY60141.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305]
          Length = 952

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 226/842 (26%), Positives = 388/842 (46%), Gaps = 105/842 (12%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            +N ++     ++ +  + ++  ++  YL YA+S I  RA+PD+RDG KP  RRI+ AM+
Sbjct: 7   DENQNSPQVPGDDRIAQLDIQDEMQNSYLTYAMSVIISRALPDVRDGLKPSQRRILVAMN 66

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           ++ L    +  K ++I GE +G  HPHGDQ++Y +LVR+AQ +  R  LI  QGNFG++ 
Sbjct: 67  DLNLGPNGSRTKCSKITGETMGNYHPHGDQAIYPTLVRMAQDWAMRQVLIDKQGNFGSLA 126

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           G   AA+RYTEAR++ VA  +L  +  + VDF  TY++   EP V PS+FPNLL NG+SG
Sbjct: 127 GLPPAAHRYTEARLSPVASEMLADIKSETVDFIPTYDQLRLEPTVLPSRFPNLLVNGSSG 186

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMATSIP HN+ E+ EA   +ID PE +I+++ + + GPDFPTGG ++  +    + 
Sbjct: 187 IAVGMATSIPPHNLTEVAEAVKMVIDEPECTIDEIAQVMPGPDFPTGG-VICGQFGTRQG 245

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GR    +RA+   +   + S  IVVTEIPY   + R+ EK+  L+  +R+  +  + 
Sbjct: 246 YSTGRSTITLRAKTHFDTEKQ-SDVIVVTEIPYMETRDRIREKLEALVKDERVKGIARVV 304

Query: 303 DESAED----VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           D +          +     R  D ++++  ++  S ++T F + +  L  G  PQ++ + 
Sbjct: 305 DLTDRKIPNWQVHLQIVLKRDADKEVVLNQLYKYSPLQTTFSIILLALV-GNRPQLLSIK 363

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            +L E++ HR  V+ RR+  ++    +R   ++G+LIA LNIDE+I+ IRN         
Sbjct: 364 DMLLEFIRHRVTVIRRRTEHQLSEARKRKHTVEGMLIAQLNIDEVISTIRNSPSRSEAKN 423

Query: 419 SRFSL-------------------------------TENQVDAILNLRLRSLRKLEEYQI 447
               +                               + NQ +AI++++L SL  LE  ++
Sbjct: 424 RLRDIKVPAEMIARALGERGFQEFQREQGTSDEYSLSLNQAEAIVSMQLGSLANLEREKL 483

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL E ++   LL+        +  E+ +++  +       +RRT   E+     
Sbjct: 484 GDEHRKLLEEIDECLHLLSDEAHIRAAVREEMDDLQRKYPD-----KRRTEISEI--ELT 536

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHT 559
              +  +I + P+ V ++ RG+I+                ++     E D ++    A T
Sbjct: 537 DVNKDELIAEAPMVVTLTQRGYIKRTELTAYKAQNRGGRGITGAKSDEEDPIRHVFVAST 596

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI---VTAFVYDSTCKL 614
              +L  +  G+ Y     +L       +  A+  L+ L   +++   +    +D    L
Sbjct: 597 HSYLLFFTNLGRVYWQKVYDLPLQNRTAKGRALVNLLSLADGEEVYNCIDVREFDDERFL 656

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF 673
           ++ + KG       S      R G   +K+  ++++  VVKV   D + +   N   + F
Sbjct: 657 MMATKKGVVKKTSLSAYSRPLRGGIIAIKLDDDDELIDVVKVAPEDDLIISTANGMSIRF 716

Query: 674 SIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSEND------ 725
           + D    M R  +GV+  S  KD  +  ++     E +  + +    Y +          
Sbjct: 717 NHDDARAMGRNTRGVKGVSLGKDDHVVGMVVA--DEQMCLLTACENGYGKRTPFGFGGAS 774

Query: 726 ------------------------------------LLGWLGKRGGVGSLVPKGFPRSGK 749
                                               +     KRGG G    +   R+GK
Sbjct: 775 DAEEAPVDDDAVDSTEDSSADSSDDSSSDEPDTRSNMRYRRQKRGGKGLRDIRTTERNGK 834

Query: 750 FL 751
            +
Sbjct: 835 AV 836



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 57/216 (26%), Gaps = 48/216 (22%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            + A+   + D L   +     D +++ + +G +      +     G        + L  
Sbjct: 680 GIIAIKLDDDDELIDVVKVAPEDDLIISTANGMSIRFN-HDDARAMGRNTRGVKGVSLGK 738

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEE-----SE----------------------- 630
           +  +V   V D    LL     G            S+                       
Sbjct: 739 DDHVVGMVVADEQMCLLTACENGYGKRTPFGFGGASDAEEAPVDDDAVDSTEDSSADSSD 798

Query: 631 --------------IIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLI 672
                              R GK    +     + + + ++     D V ++    K+  
Sbjct: 799 DSSSDEPDTRSNMRYRRQKRGGKGLRDIRTTERNGKAVDILAVADDDDVLIISSAGKIQR 858

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
                I ++ R  +GVR+    DG     +     E
Sbjct: 859 IRAADISQVGRNTQGVRIMRMGDGDRLVGLARIPAE 894


>gi|149177839|ref|ZP_01856438.1| DNA gyrase subunit A [Planctomyces maris DSM 8797]
 gi|148843329|gb|EDL57693.1| DNA gyrase subunit A [Planctomyces maris DSM 8797]
          Length = 919

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 225/840 (26%), Positives = 374/840 (44%), Gaps = 100/840 (11%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  DN      ++++N+K + ++  + + YL YA+S I  RA+PD RDG KP  RRI+ A
Sbjct: 1   MASDN--GEEPIIDKNIKYLDIQDEMRDSYLTYAMSVIISRALPDARDGLKPSQRRILVA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+++ L   ++  K A+I G+  G  HPHGD S+Y +LVRL Q +V R  LI  QGNFG+
Sbjct: 59  MNDLNLGASSSRVKCAKISGDTSGNYHPHGDGSIYPTLVRLGQDWVMRNVLIDKQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           + G   AA RYTEAR++ VA  +L  ++ + VDF  TY++ + EPVV PSKFPNLL NG+
Sbjct: 119 LAGLPPAAMRYTEARLSSVAAEMLDDINRNTVDFVPTYDQRNDEPVVLPSKFPNLLVNGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIP  N+ E+CEA   LIDNP+ +I+ +L+ + GPDFPTGG I+  R  I 
Sbjct: 179 SGIAVGMATSIPPQNLGEVCEAITLLIDNPDATIDDILQVMPGPDFPTGG-IICGRYGIR 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           + Y  GR    +RAR   E   + S  IVVTEIPY   + R+ EK+  L+   R+  +  
Sbjct: 238 KGYATGRSTITLRARTHFETEKQ-SDVIVVTEIPYMETRDRIREKLETLVRDDRVKGISR 296

Query: 301 IRDESAED----VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           I D +  +       +     R  D ++++  +F  S ++  F + +  L  G  P+ + 
Sbjct: 297 IVDLTDRNVPPWKVHLQIILKRDADKEVVLAQLFKFSPLQNTFSIILLALV-GNRPETLS 355

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           +  ++++++ HR +V+ RR+ F +    +R   ++GL+IA ++IDE+I  IRN       
Sbjct: 356 IKELIQQFILHRIDVIRRRTEFLLAEARKRKHTVEGLMIAQIDIDEVIKTIRNSPSRAEA 415

Query: 417 M-------------------------------VSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              +SL+ NQ +AI++++L SL  LE  
Sbjct: 416 KISLQGLQVDGKLIERALGEDGFKEYQNEQGVHEYYSLSANQAEAIVSMQLGSLANLERE 475

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++  E   LL    +   LL+      + I  ++  +++ +S      +RRT   E    
Sbjct: 476 KLSGEHQELLKAISEYLYLLSDEDHIRSVIREDMLLLQQKYSD-----KRRTDISEDELT 530

Query: 506 DKATLQQAMIEKE------PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
           D         E           +  +     ++       +      E D ++    + T
Sbjct: 531 DVNRDDLITEEPMVVTLSQRGYIKRTQLNTYQAQNRGGKGIKGAKTDEEDPIQHLFVSST 590

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-----IVTAFVYDSTCKL 614
              +L ++  G+ Y     +L       +   L+  L+  +D      V    +D    L
Sbjct: 591 HSYLLFITNRGRVYWQKVYDLPLQGRTAKGRALVNLLSLQEDEAVSNCVAVREFDEERFL 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIF 673
           ++ +  G       S      + G   +K+  ++++   + V+ G+ + +   +   + F
Sbjct: 651 VMATRNGIIKKSPLSAYSRPQKGGIIAIKLDEDDELVEALIVSPGEDLLLATSDGMAIRF 710

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN-------- 724
           +      M R  +GV+       G    +     E    +      Y +           
Sbjct: 711 AQSDARSMGRNTRGVKGIKLSKSGHVIGMVIADPETC-LLTVCENGYGKRTPFGFIPPAE 769

Query: 725 -------------------------DLL--------GWLGKRGGVGSLVPKGFPRSGKFL 751
                                    D              +RGG G    +   R+G  +
Sbjct: 770 EQEEEVLEAEEEITAEPDSDSEENTDEEQETRSGMHYRRQRRGGKGIRDIRTSARNGNAV 829



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 50/197 (25%), Gaps = 50/197 (25%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           ++DG A    A +     G        I L+ +  ++   + D    LL V   G     
Sbjct: 702 TSDGMAIRF-AQSDARSMGRNTRGVKGIKLSKSGHVIGMVIADPETCLLTVCENGYGKRT 760

Query: 627 EES-----------------------------------------EIIANTRKGKTF---- 641
                                                             R GK      
Sbjct: 761 PFGFIPPAEEQEEEVLEAEEEITAEPDSDSEENTDEEQETRSGMHYRRQRRGGKGIRDIR 820

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
               +   + ++     D V +V  + K+      +I ++ R  +GVR+ +         
Sbjct: 821 TSARNGNAVDIIPVAEDDEVLMVTTSGKIQRVRGCEISQVGRNTQGVRVITLDTNDKLVS 880

Query: 701 ICFKICEGLTWIDSAGR 717
           +     E    +D +  
Sbjct: 881 LARIPAE---IVDESEN 894


>gi|15614702|ref|NP_243005.1| DNA topoisomerase IV subunit A [Bacillus halodurans C-125]
 gi|10174758|dbj|BAB05858.1| DNA topoisomerase IV subunit A [Bacillus halodurans C-125]
          Length = 816

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 213/748 (28%), Positives = 393/748 (52%), Gaps = 23/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   + +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   ERYLDLPLEEVIGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYRDGNTADKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD+++R++Q +  R  L+   GN G+IDGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYDAMIRMSQEWKVRNILVDMHGNNGSIDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +D++ VD+   +++ + EPVV P+KFPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSKIAAELLRDIDKETVDYIPNFDDSEQEPVVLPAKFPNLLVNGSTGISSGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +  +  ++NP +++++L++ I GPDFPTGG IV+  E I ++Y  G+G   VR 
Sbjct: 185 HLGEVIDGVIMQMENPNVTLDELMQVIKGPDFPTGG-IVQGIEGIRQAYSTGKGKVVVRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY+V K+ L++K+ E+   K++  + ++RD++      ++ 
Sbjct: 244 KAEIEDLRGGKQQIVITEIPYEVVKANLVKKMDEIRFDKKVDGIAEVRDDTDRTGLRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + +++ +F  +D++  +     V    + P++M L  +++ ++ H+++V+ R
Sbjct: 304 ELKKDADANGILQYLFKNTDLQITYNF-NMVAIHNKTPRLMGLKSLIQAYIDHQKDVIIR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R+++ +Q    R  I++GL+ A   +D++I  IR     K    +   +F  TE Q +AI
Sbjct: 363 RATYDLQKAKDRQHIVQGLMKAISILDDVIQTIRASKDKKNAKDNLIAQFDFTEAQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L     +++++L S K+    +  E+  +K+ F+    
Sbjct: 423 VTLQLYRLTNTDITTLEEEAAELERRIHELEAILASEKKLIGVVKKELLAIKKQFTDE-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  +    +       ++  E + V ++  G+++     S    +      KEG
Sbjct: 481 ----RRTIIKKEIEEIKITMDVLVASEDVMVTVTKEGYVKRTSLRSYAASNGELPGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D L      +T D +LL +  G    LP   L   R       +  L+ ++ + DI+T  
Sbjct: 537 DYLLGRYEMNTQDTLLLFTKKGNYLYLPVHQLPDIRWKDNGQHVANLVTVDKDDDILTTL 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               +     LL ++ +G A   + S   A    K    LK+  ++++  V++ +G + V
Sbjct: 597 AVKEFSEEESLLFITRQGMAKRSQLSLYKAQRFSKPLMALKLKDDDEVVSVMRTSGNEEV 656

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSY 719
            +       L FS ++I ++  R  GV+  + K D  + D   F + + + ++    R  
Sbjct: 657 FIATSFGYGLWFSENEISQVGQRAAGVKGINLKNDDAVVDATTFTLNDRVEFLVVTHRGG 716

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            +  +        R   G ++ +   ++
Sbjct: 717 VKRISITEFDKSTRAKRGLVMLRELKKN 744


>gi|56475779|ref|YP_157368.1| DNA topoisomerase IV subunit A [Aromatoleum aromaticum EbN1]
 gi|56311822|emb|CAI06467.1| DNA topoisomerase IV subunit A (EC 5.99.1.-) [Aromatoleum
           aromaticum EbN1]
          Length = 786

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 271/757 (35%), Positives = 410/757 (54%), Gaps = 38/757 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            + L    E  YLAYA+S +K RA+P + DG KPV RRI++AM+EM L   +   KSAR+
Sbjct: 34  PLPLDRHAERAYLAYAMSVVKSRALPQVEDGMKPVQRRILYAMNEMRLSAASKHVKSARV 93

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD SVYD++VR+AQ F  RYPL+ GQGNFG+ DGDSAAA RYTE R+T 
Sbjct: 94  VGDVIGKYHPHGDTSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTP 153

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AEL+L  +D   VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E
Sbjct: 154 IAELLLAEIDRGTVDFVPNYDGAFHEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLRE 213

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   LI +P+  ++ +L  + GPDFP GG ++ S ++I ++Y  GRG  R+RARW V
Sbjct: 214 VADAVCHLIRHPDAGLDDVLPLLPGPDFPGGGQLISSADAIRDAYAGGRGSLRMRARWHV 273

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE----------- 307
           EE+ RG W +++ E+P+ V  + ++  I  L   +     +D+  E              
Sbjct: 274 EELARGQWRVIIDELPHGVSAASVLAGIETLTNPQPRGGKKDVSQEQKNLKQLVLGVLET 333

Query: 308 ---------DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQV 354
                     VRIVL P++     D  M  +   + +E    +NM ++      G  PQ 
Sbjct: 334 VRDESSDKSPVRIVLEPRSSRQSRDEFMAVLLAHTSLENSVSVNMTMIGHGPVHGGRPQQ 393

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL+EW+  R   + RR+  R+  +DRR+ IL G +IA+L+I+++I +IR  D+PK
Sbjct: 394 KNLVQILREWIDFRYVTVERRTRHRLDEVDRRLHILAGRMIAFLHIEDVIRVIRESDEPK 453

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
           P ++  F L+E Q + IL +RLR L +LE ++I+ EL  L  E+EK+  LL+S       
Sbjct: 454 PALIDAFGLSEIQAEDILEIRLRQLARLEGFRIEKELAELKEEREKLQHLLDSRAAMTKL 513

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  EI +  + +         R T  E   A      +  +  EP+TV++S  GW+R+ +
Sbjct: 514 ILKEITDDAKKYGDE------RRTLIESVAAVAPA--EISVPDEPVTVIVSKNGWVRARQ 565

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H +D +A+ +K GD     +   +T  +++L T G+AYT+    L  GRG G  I  L+
Sbjct: 566 GHGIDAAAVTYKAGDFAFALVETRSTWPLVVLDTHGRAYTIRVAELPGGRGDGVPIATLV 625

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           D  +   +      +     +  +S G  FI    E  +  R GK F+ V   EK+    
Sbjct: 626 DFQNGAKLAQVVSAEPESAWMFANSGGYGFICTLLEATSRQRAGKAFMTVEKGEKVLAPA 685

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +V G+ +A V EN +LL+F   ++   + G+GV + +  +G     +     E +  +  
Sbjct: 686 RVLGERIAAVSENGRLLVFPRSEMKVQAGGRGVIVMALDEGESMVAVAAPADEAVLKVAG 745

Query: 715 AGRSYNRSENDLLGW-----LGKRGGVGS-LVPKGFP 745
            GR    +  DL        + +R   GS L  +  P
Sbjct: 746 IGRGNKATSVDLKPAQLATLVHRRARKGSPLAIRIKP 782


>gi|119713346|gb|ABL97410.1| DNA topoisomerase IV subunit A [uncultured marine bacterium
           EB80_02D08]
          Length = 752

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 452/750 (60%), Gaps = 24/750 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E + ++SL+   EE YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD G+ +K
Sbjct: 4   QEQINSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+ D   S AA RYT
Sbjct: 64  KSARTVGDVIGKFHPHGDGAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+++T+ A L++  +    VD++  ++    EPV+FPSK P++L NGTSGIAVGMAT IP
Sbjct: 124 ESKLTKFANLLISELKSGTVDWQPNFDGSLLEPVIFPSKLPSILLNGTSGIAVGMATDIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+ +A + L++NP+  +  LL+ + GPDF     I+ S E + E Y  GRGGF+ 
Sbjct: 184 SHNINEVIDATVHLLENPKSELADLLKIVKGPDFSNHSPIIISTEELEEIYSTGRGGFKA 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           +A W      +    I++  +PYQ   S+++E+IA+ ++ K+IP++ D+ DE       R
Sbjct: 244 QAFWQ-----QDKNQIIINALPYQASGSKILEQIADQMVKKKIPMVVDLSDEGDHKEPVR 298

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K+  ++ + +M  +F  +D++  + +NMN++S+   P+V  L  +LKEWL  R+ 
Sbjct: 299 LVITLKSNRVNAEDVMNHLFASTDLQKNYRVNMNLISLKGGPKVFSLIDLLKEWLVFRKN 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            + R+   R+  ++ R+ IL+GLLI YL++D++I IIR  D+PK  ++  F L++ Q +A
Sbjct: 359 TVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKDIIKAFKLSDIQANA 418

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RLR L KLE+ +++ E D LLAE+  I+ +L+S  +    I  E+ E+KE+F +  
Sbjct: 419 ILEIRLRQLAKLEQIKLEQERDTLLAEQTDIEKILSSKTRLKTLIKNELLEIKEVFGEE- 477

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                R +  +     K   ++  +  EP+TVV+S  GWIRS K H +D S+L ++  D+
Sbjct: 478 -----RKSPIKELSGAKVFSEEETLVTEPVTVVLSAAGWIRSAKGHDIDPSSLSYRGEDT 532

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L+      +    + L ++GKAY+LP  +L S RG G+ I   +  +     ++  + + 
Sbjct: 533 LQDFRRGKSNQVSVFLDSNGKAYSLPTHSLPSARGMGDPISGRVSADSGVKFISTLIGND 592

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENR 668
             K +++++ G  +I E   +I+N + GK F+K+  + ++   +KV  DH  +A +    
Sbjct: 593 DDKFMIMNTAGYGYISEFKNMISNKKSGKAFMKIPHDAELLKAIKVRNDHMYIAALSNIG 652

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +LLIF+ID++P + +GKG ++ +        K+  ++          L   +S  R    
Sbjct: 653 RLLIFNIDELPVLGKGKGNKIINIPTAKFIAKEELMTHAQLLSEASSLRI-ESGKRFLTL 711

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              DL  ++  R   G+++P+G+ +  + +
Sbjct: 712 KLKDLENYISTRAKRGNMLPQGYRKVDQMI 741


>gi|257076795|ref|ZP_05571156.1| DNA gyrase subunit A [Ferroplasma acidarmanus fer1]
          Length = 791

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 224/742 (30%), Positives = 374/742 (50%), Gaps = 17/742 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   ++  YL YA+S I  RAIPD RDG KPV RRII++M E+G+     +KKSARI+G
Sbjct: 5   PIEEEIKTSYLDYAMSVIVSRAIPDFRDGLKPVQRRIIYSMYELGVTHDKPYKKSARIIG 64

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           E +GK HPHGD S+Y++L R+AQ F  RY LI GQGNFG+IDGD+ AA RYTEAR+ ++A
Sbjct: 65  ETMGKYHPHGDSSIYEALARMAQDFSLRYTLIDGQGNFGSIDGDAPAAMRYTEARLGKMA 124

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +++ ++++ V F   ++    EPV FPS+ P LL NGTSGIAVGMAT++  HN+ EI 
Sbjct: 125 EEMVRDIEKETVPFSPNFDGSLDEPVYFPSRIPQLLINGTSGIAVGMATNMVPHNLSEIS 184

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A +  ID+P+ S+E LL+++ GPDFP GG+I  +   ++  YR G G    +     EE
Sbjct: 185 DAIMYGIDHPDCSVEDLLKFVQGPDFPGGGMIYRN-SDLLNIYRTGHGKVFCQGEIDDEE 243

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  I++  +PY V K+  I+ +AE +    I  + DIRDES  +   V+       
Sbjct: 244 KK----KIIIKTLPYGVNKALYIQNVAEQVKNGIISNISDIRDESDRNGIRVVIKIKNDD 299

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
              L +  ++  + +ET   +N  VL +   P+VM LD ++  ++  R E++ +RS F +
Sbjct: 300 SKGLTINQLYEHTPLETTIGVNNLVL-LNNEPKVMTLDEMILGFIDFRLEIIRKRSVFEV 358

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNLRLR 437
             +  R  IL GL+IA  NID +I IIR+ D       S      L+E Q  AIL++RL+
Sbjct: 359 NKLMDREHILSGLVIALENIDRVIKIIRSSDNADMAKTSLMDQLSLSEKQALAILDMRLQ 418

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  LE  +I  EL ++    E+++ ++N+  ++ + +  E  E+K+ F           
Sbjct: 419 RLTGLEIKKINDELISIKENIERLNEIINNESKRRDVLKQETLEIKKQFGDVRRTKVLNR 478

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                +  D    +++++      ++        +++      +    ++ D+++  L  
Sbjct: 479 DINARNDEDIIPNEESIMILSENGLLKRVSSEEYNVQKRGGKGTITATRKEDTVRSILSC 538

Query: 558 HTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVTAF--VYDSTCK 613
            + D I   +  G+     A      S    G      + +N N+ I             
Sbjct: 539 MSHDMIYFFTNTGRVLRTKAYTIEKKSRTSLGSVGGTFLKMNENEKIKQIMKSPASPKNF 598

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLI 672
           L++++ KG        EI+     G   +K+  ++++  V+ +     + V   N K  +
Sbjct: 599 LIIITKKGFIKRTPVKEILDMRESGLKIIKLDDQDEVVSVMDLEKPSKIFVAASNNKAAV 658

Query: 673 FSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           F  D++    R  +GV+        + +   F + +  T +        +        + 
Sbjct: 659 FLSDEVSSTGRASRGVKSMRLNGAEVIN--SFLVDDNDTVMSITENGLGKRTKITDFSIH 716

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            RG  G+L+ K   R+G  +++
Sbjct: 717 HRGSSGNLIFKESERTGSLVTA 738



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 5/111 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVV 654
           +  +++ +F+ D    ++ ++  G     + ++   + R     L     E+   +   +
Sbjct: 680 NGAEVINSFLVDDNDTVMSITENGLGKRTKITDFSIHHRGSSGNLIFKESERTGSLVTAL 739

Query: 655 KV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            V     V +V  N K +  + D+I   SR   GV+L +  D  +      
Sbjct: 740 PVGDSQEVLIVTRNNKTIRLNSDEIKIQSRVTSGVKLINVDDDDLVVAASV 790


>gi|56963753|ref|YP_175484.1| DNA topoisomerase IV subunit A [Bacillus clausii KSM-K16]
 gi|56909996|dbj|BAD64523.1| DNA topoisomerase IIA subunit A [Bacillus clausii KSM-K16]
          Length = 807

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 215/756 (28%), Positives = 384/756 (50%), Gaps = 26/756 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E    + L   + +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      ++
Sbjct: 4   SERYLDLPLEEVIGDRFSRYSKYIIQERALPDARDGLKPVQRRILYAMYNEGNTADKPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQEWKVREQLIDMHGNNGSVDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +++ +D+  VD+   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSAISAELMRDLDKGTVDYIPNFDDSIEEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ EI +    L+  P  S+++LLE I GPDFPTGG IV+    I ++Y  G+G   VR
Sbjct: 184 HHLPEIIDGITLLMQKPHTSLDELLEIIKGPDFPTGG-IVQGSNGIRQAYETGKGKIVVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +EE   G   IV+TEIPY+V K+ L++K+ E+   K++  + ++RD++      ++
Sbjct: 243 GRTAIEETRGGRKQIVITEIPYEVVKASLVKKMDEIRFDKKVDGIAEVRDDTDRTGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  DP+ ++  +F  +D++  +     V    + P++M L  +++ ++ H+++V  
Sbjct: 303 VELKKEADPEAILHYLFKNTDLQVTYHF-NMVAIHNKTPKLMGLLDLMQAYIDHQKQVFT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDA 430
           RRS F ++    R  I++GL+ A   +DE+IA+IR     K     + S+F  TE Q +A
Sbjct: 362 RRSQFELKKAVDRAHIVEGLMKAVSILDEVIAVIRASKDKKDAKANLQSQFGFTEPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E + L  +  ++ ++L S K+  + I  E+ ++K+ F+   
Sbjct: 422 IVTLQLYRLTNTDITTLQKEAEELEKQIAELKAILASEKKLISVIKKELNQIKKTFASP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                R T       +       +I  E + V I+  G+++     S   S+        
Sbjct: 481 -----RRTEIRAEIEEIKINMDMLIASEDVRVTITKAGYVKRTSLRSYSASSQDGPGMKE 535

Query: 551 LKI---ALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTA 605
                 +  A+TTD +LL +  G    +P  +   +  +  G+ +  L+ ++ + +I+ A
Sbjct: 536 GDRLLLSQEANTTDVVLLFTKRGSYLYVPVHSLPDIRWKDDGQHVANLVAIDADDEIIAA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DH 660
            +   +  T  LL ++  G A     +   A    K    LK+   +++  V+   G   
Sbjct: 596 QIIREFAETKYLLFMTRAGMAKRSTLNLYQAQRYSKPLMALKLKEGDEVVRVLLTDGQQE 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGI-SDVICFKICEGLTWIDSAGRS 718
           + V       L FS + +  +  R  GV+  + K+G        F + + + ++ +  R 
Sbjct: 656 LFVATAFGYGLWFSEEDVSLVGQRAAGVKGINLKEGDYCIGAEAFGLEDSVEFLVATHRG 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             +           R   G L+ +   ++   + + 
Sbjct: 716 AVKKMAITEFEKSSRAKRGVLMLREL-KNNPHRLVG 750


>gi|260425958|ref|ZP_05779937.1| DNA gyrase, A subunit [Citreicella sp. SE45]
 gi|260420450|gb|EEX13701.1| DNA gyrase, A subunit [Citreicella sp. SE45]
          Length = 915

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 255/851 (29%), Positives = 404/851 (47%), Gaps = 111/851 (13%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D +S            +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++ + 
Sbjct: 11  DDEMSGPERPRYSG-PGISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLW 69

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G     +++K A  VG+V+G+ HPHGD +VYD+LVR+AQ F    PLI GQGNFG++D
Sbjct: 70  ENGQTKSKSYRKCATAVGDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLIDGQGNFGSMD 129

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AAYRYTE+R+ + AE +L+ +D+D VDF   Y  E +EPVV P+++PN+L NG  G
Sbjct: 130 GDPPAAYRYTESRLERTAEALLEDIDKDTVDFVPNYANERNEPVVLPARYPNVLVNGAEG 189

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT IP HN+ E+ +A LALI+ P++S E+L+EYI  PDFPTGG+I+  R    ++
Sbjct: 190 IAVGMATRIPPHNLGEVIDATLALIEQPDLSSEQLIEYIPAPDFPTGGVIL-GRSGARKA 248

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +RA+  +EE+ R  + IV+ EIPYQV K+ +IE+IAE +  K+I  +  ++
Sbjct: 249 YLEGRGSVIIRAKTRIEEIKRDRYAIVIDEIPYQVNKATMIERIAECVRDKKIEGIAHVQ 308

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R    ++++  +F  + M+  F  NM  L+ G  P+ + L   L 
Sbjct: 309 DESDRSGVRVVVELKRDATAEVVLNQLFRFTPMQVSFGCNMLALN-GGRPEQLTLRAFLT 367

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---------- 412
            +L  R +V+ RR+++ ++    R  IL GL +A  N+DE++A IR              
Sbjct: 368 AFLDFREDVVARRTAYLLRKARERSHILCGLAVAVANVDEVVATIRASADAAEARDKLMT 427

Query: 413 -------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                               K      ++L+E Q  AIL LRL+ L +L   ++  EL+ 
Sbjct: 428 RRWPAHEIAPYIQLIDDPTHKMNEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  + ++   +L S ++    I  E+  VKE F+       RRT   + +        + 
Sbjct: 488 LAKKIKEYLEILGSRERIMEIITNEMIAVKEQFAVP-----RRTEIADWAGDMD---DED 539

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +IE+E + V ++  G+I+          K     +S    KE D +     A+T  ++L 
Sbjct: 540 LIEREDMVVTVTAGGYIKRTPLAEFRAQKRGGKGVSGGSLKEDDVVTQLFVANTHTQLLF 599

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVV 617
            +T+G AY L    L        G+AI  ++ +     +      D         +++  
Sbjct: 600 FTTEGMAYKLKCWRLPQGGRTSKGKAIVNILPIPQGVSVAAIMPVDRDEDEWDDLQIVFA 659

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIF 673
           +SKG+      S+     R GK  +K   E++   +         D + +V ++ + + F
Sbjct: 660 TSKGSVRRNRLSDFTNVMRNGKIAMKFEGEDENTRLINARICSEDDDIMLVTDSGRAIRF 719

Query: 674 SIDQIPEM-SR-GKGVRLQSYKDGGISDVICF---------------------------- 703
            +  +    SR   GVR     +G     +                              
Sbjct: 720 PVPDVRVFNSRNSTGVRGVRLLNGDEVVSMSVIRHFEAESDERASYLKMRRAMAGLADDA 779

Query: 704 ---KICEG------------------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 EG                     +    +   +  +     +  RGG+G    +
Sbjct: 780 ETSDEEEGNADSRLSQERYAEMTAAENLILTITAKGLGKLSSSHDYPIRGRGGMGVTAWE 839

Query: 743 GFPRSGKFLSS 753
              R G+ ++S
Sbjct: 840 KSMRGGEIVAS 850



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 58/221 (26%), Gaps = 15/221 (6%)

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           R  +  +       + +        + V  S                 +         I 
Sbjct: 699 RICSEDDDIMLVTDSGRAIRFPVPDVRVFNSRNSTGVRGVRLLNGDEVVSMSV-----IR 753

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D         +A    A +  +           +      ++  A        +
Sbjct: 754 HFEAESDERASYLKMRRAMAGLADDAETSDEEEGNADSRLSQERYAEMTAA-----ENLI 808

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLK----VSSEEKMKLVVKVTGDHVAVVGENRKL 670
           L +++KG   +    +     R G         +   E +       GD + +     + 
Sbjct: 809 LTITAKGLGKLSSSHDYPIRGRGGMGVTAWEKSMRGGEIVASFPVEKGDQIMLATSTGQS 868

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           +   +D I   SRG  GVR+ + + G     + +   +G  
Sbjct: 869 IRVPVDGISFRSRGAGGVRVFNTRAGETVVSVAWIADQGDE 909


>gi|311030251|ref|ZP_07708341.1| DNA topoisomerase IV subunit A [Bacillus sp. m3-13]
          Length = 814

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 218/754 (28%), Positives = 384/754 (50%), Gaps = 23/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   EKFHDLPLEEVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYAEGNVHDKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD++VR++Q +  R  LI   GN G+IDGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYDAMVRMSQDWKVRNMLIEMHGNNGSIDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D+  V+F   +++   EPVV P+ +PNLL NG++GI+ G AT IP H
Sbjct: 125 RLSPIASELLRDLDKKTVEFIPNFDDTSQEPVVLPAMYPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  IDNP +++++L+  + GPDFPTGG I++  E I ++Y  G+G   VR 
Sbjct: 185 HLGEVIDATIMRIDNPSVTVDELMTVVKGPDFPTGG-IIQGVEGIKKAYETGKGKIIVRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              VE++  G   IV+TE+PY+V K+ L++KI EL   K++  + ++RDE+      V+ 
Sbjct: 244 LAEVEDIRGGKQQIVITEVPYEVNKANLVKKIDELRYDKKVDGISEVRDETDRTGLRVVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + ++  ++  +D++  F     V    + P +M L   L  ++ H++EV+  
Sbjct: 304 ELKKEADANGILNYLYKNTDLQITFNF-NMVAIYKKRPTLMGLPHFLDAYIDHQKEVISN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +     R  +++GL+ A   +DE+IA IR     +    +   +F+ TE Q +AI
Sbjct: 363 RSRFELNRAKERQHVVEGLMKALSILDEVIATIRASKDKRHAKDNLIAKFTFTEPQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E D L  +  +++++L S K+ ++ I  +++ VK+++     
Sbjct: 423 VSLQLYRLTNTDITALQAEADELAKKVAELEAILGSEKKLFSVIKSDLKRVKKLY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
              RR+   +    +     + MI  E + V ++  G+++     S    +      KE 
Sbjct: 478 TNGRRSKI-QDQIEEIKINLEVMIPSEDVIVTVTKDGYVKRTSLRSFSASNGQDFGMKET 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D +   L  +TT  +LL +  G    LP   L   R       +  ++ ++ ++ I+ A 
Sbjct: 537 DRIISKLDINTTQTLLLFTNKGNYLYLPVHELPDIRWKDMGQHVANIVPIDRDESIIKAI 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               ++    LL V+  G     E S   A    K    + +  ++++  V    G   +
Sbjct: 597 PVSNFEDPNFLLFVTRNGMVKKTELSAYKAQRYSKPLMAVNLKGDDQVVDVHLTDGAQDI 656

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSY 719
            +   +   L F+ ++I  +  R  GV+  + KD   +   + FK         +  R  
Sbjct: 657 FLATRSGYGLWFTEEEINVVGARAAGVKGINLKDSDYVVSGLVFKKESKAMLFIATHRGA 716

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           R   G ++ +    +   +++
Sbjct: 717 VKKLKITEFDKATRAKRGLVMLREVKNNPHQIAA 750


>gi|72162530|ref|YP_290187.1| DNA topoisomerase IV subunit A [Thermobifida fusca YX]
 gi|71916262|gb|AAZ56164.1| DNA topoisomerase IV subunit A [Thermobifida fusca YX]
          Length = 831

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 229/767 (29%), Positives = 382/767 (49%), Gaps = 37/767 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S     + E +  V +   +   +L YA S I +RA+PD RDG KPV RRI++ MSEMGL
Sbjct: 9   SPPPEELTEKIIDVDVSEEMRGSFLEYAYSVIYQRALPDARDGLKPVQRRILYQMSEMGL 68

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS- 125
                  K AR+VGEV+GKLHPHGD ++YD+LVRL+QPF  R PL+ G GNFG++ GD  
Sbjct: 69  RPDRGHVKCARVVGEVMGKLHPHGDSAIYDALVRLSQPFAMRVPLVDGHGNFGSLGGDDA 128

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+T+ A L+++ +DE+ VDFR  Y+ +++EP V P+ FPNLL NG SGIAV
Sbjct: 129 PAAMRYTEARLTRAAMLMVESIDENVVDFRPNYDGQETEPEVLPAAFPNLLVNGASGIAV 188

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ E+  AA  L+ +P+ ++E+L+E+I GPD PTGG I    + I ++Y  
Sbjct: 189 GMATNMAPHNLGEVIAAARHLLAHPDATLEELMEFIPGPDLPTGGTIT-GLDGIRDAYTK 247

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FR+RA   +E++      +VVTE+PY V   ++I +I EL+ AK++  + D++D +
Sbjct: 248 GRGTFRIRATVSIEKLTPRRTGLVVTELPYNVGPEKVISRIKELVQAKKLQGISDLKDLT 307

Query: 306 AEDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             +    ++       +P+ ++E ++ L+ ME  F +N   L     P+ + L  +L+ +
Sbjct: 308 DRNQGLRLVIELKNGFNPEAVLEELYRLTPMEETFGINNVALVD-GEPRTLGLRDLLQVY 366

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + HR EV+ RR   R    + R+ ++ GLL+A  +ID++IA+IR+ D     +  ++  F
Sbjct: 367 VDHRLEVVRRRCEHRRAKREERLHLVTGLLVALADIDQVIAVIRDSDDSTQARQRLMDTF 426

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q   IL+  LR L + ++ +++ E D L AE  ++ ++L S K+    ++ E+  
Sbjct: 427 DLSDTQARYILDTPLRRLTRYDKQELEQERDTLTAEIAELTAILESDKKLRRLVSKELAA 486

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V + F+       RRT   E +   + +     +  +P  V++S  G I       +   
Sbjct: 487 VAKEFATP-----RRTVLRESTGEVRTSAMPLEVGDDPCHVLLSTSGLIGRTSGQQLPPM 541

Query: 542 ALHFKEGDSLKI-ALHAHTTDRILLLSTDGKAYTLPA---------GNLLSGRGHGEAIQ 591
               +  +      + A     + L++  G+   +P           +       G  + 
Sbjct: 542 FEGPRTRNDAMASNVRATVRGEVGLVTDLGRVIRVPVLELPELPDKADENPAISSGVPVT 601

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVV-SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             ++L+ ++ ++     DS    LVV +  G    V         +     + +   +++
Sbjct: 602 EFVELDADERVIALTSLDSDGPGLVVGTRSGIVKRVGGD--YPQQKDDFEIIALRPGDRL 659

Query: 651 KLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD-VICFKIC 706
                     + +  +  N +LL FS   +    RG  GV      +G  +         
Sbjct: 660 VGATPLVTGEEDLVFITSNAQLLRFSATTVRPQGRGAGGVTGIRLAEGAHAVWFGAVLSP 719

Query: 707 EGLTWIDSAGR--------SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           E    +  AG            +           R   G    +   
Sbjct: 720 EDAVVVTVAGSSTGPDSQPGTAKVTPFTAFPAKGRATGGVRCQRFLK 766


>gi|311105322|ref|YP_003978175.1| DNA topoisomerase IV subunit A [Achromobacter xylosoxidans A8]
 gi|310760011|gb|ADP15460.1| DNA topoisomerase IV, A subunit [Achromobacter xylosoxidans A8]
          Length = 778

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 263/748 (35%), Positives = 406/748 (54%), Gaps = 41/748 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM  MGL  GA   KSAR+V
Sbjct: 27  ITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSARVV 86

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI GQGNFG+ DGD+AAA RYTEAR+T +
Sbjct: 87  GDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTPI 146

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E+
Sbjct: 147 AKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPPHNLREV 206

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +ALI +P++   +L   I GPDF  GG I+   E I + Y  GRG  +VRARW  E
Sbjct: 207 AQACVALIKHPQLPDAELHALIPGPDFAGGGQIITPAEDIAQIYAGGRGSLKVRARWQFE 266

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--------------- 304
           E+ RG W +VVTE+P      +++E+I E+   K     + +  E               
Sbjct: 267 EMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVKTGKKSLTPEQTQAKAVMLNLLDAV 326

Query: 305 -----SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
                    VR+V  PK   +D D  + ++   + ME+   +N+  +     P+   L  
Sbjct: 327 RDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSSSINLVCIGTDGRPRQKGLRD 386

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+A R   + RR+ +R+  +  R+ +L+G ++ YLN+DE+I  IR  D+P+  ++ 
Sbjct: 387 ILVEWIAFRTNTVVRRTRYRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDEPRAALME 446

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L+E Q + IL +RLR L +LE ++I+ EL +   ++ ++  LL++       +  EI
Sbjct: 447 RFKLSERQAEDILEMRLRQLARLEGFKIEQELADKREDQVRLQELLDNPASLKRLLIKEI 506

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT      RA      +  +  EP+TV++S +GW+R+ + H  D
Sbjct: 507 EADAKQYGD-----DRRTLIETAERAVL----ETKVLDEPVTVIVSQKGWLRARQGHGHD 557

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            S   FK+GD L  A    TTD ++ +  +G+ Y++P G L S RG G+ +  +IDL   
Sbjct: 558 ASQFGFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVPVGGLPSARGDGQPVTTMIDLGSG 617

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK--VT 657
             IV         + L+ +  G  F  + S++++  R GK F+ +   +++   V     
Sbjct: 618 TRIVHTIAAAPDSRWLLATRGGYGFAAKLSDMVSRQRAGKQFITLEEGDELLRPVPLFAG 677

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              +A++    K L+F +D++  +   G+G  L         D        G   + +AG
Sbjct: 678 AKQLALLSHKGKFLVFGLDEVKTLSGGGRGTILMGLDGTDKLDQTVPIGAGG---LRAAG 734

Query: 717 RSYNRSEND------LLGWLGKRGGVGS 738
              N+   D      L  ++GKR   G 
Sbjct: 735 IYRNKHTEDILVGDALAPYIGKRARKGR 762


>gi|15606292|ref|NP_213671.1| DNA gyrase A subunit [Aquifex aeolicus VF5]
 gi|6647520|sp|O67108|GYRA_AQUAE RecName: Full=DNA gyrase subunit A
 gi|2983485|gb|AAC07064.1| DNA gyrase A subunit [Aquifex aeolicus VF5]
          Length = 744

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 242/759 (31%), Positives = 399/759 (52%), Gaps = 58/759 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +++ Y+ YA+S I  RAIPD+RDG KPV RRI+++M EMGL     FKK
Sbjct: 5   ENLVEIPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKPFKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGE +GK HPHGDQ+VY++LVR+AQ F  RYPLI GQGNFG+IDGD AA  RYTEA
Sbjct: 65  SARIVGETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDPAAQMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +A  +L  +D+D VDF+  +++   EP V PSKFPNLL NGTSGIAVG+ATSIP H
Sbjct: 125 KLSPLAVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A + L  NP+IS+++++E + GPDFPTGG ++E+   + E Y+ GRG  +V+ 
Sbjct: 185 NLTEVGNALVKLAQNPQISVDEIMEILKGPDFPTGG-VIENFAQVKEIYKTGRGIIKVKG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE+V  G   IV+TEIPYQV K+ LI+KIA+ +   +I  + DIRDE+ ++   ++ 
Sbjct: 244 KAHVEKVQGGRERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    + +++ ++  + +E  FP+N+ VL   + P+++ +  +L+E++ HR EV+ R
Sbjct: 304 ELKRDAKGEEVLKKLYKYTPLEKGFPVNLVVLID-KEPKLVDIKTLLREFIKHRLEVILR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAI 431
           RS + ++ +  R+ I++GLL A   ID+II  IR           ++  F L+E Q  A+
Sbjct: 363 RSKYFLKKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARNYLMEEFGLSEKQAQAV 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+LRL+ L  LE  ++  E   L  + E    L+ S  ++      E  E+ + +     
Sbjct: 423 LDLRLQRLTSLEREKLLEEEKELREKIEYYKKLVASEGERIKVFIEETEELVKKYGD--- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
             +RRT                + E +  ++ ++       +    +        E   +
Sbjct: 480 --KRRTFIG------------GVKEVKEGSITVAVLQDGSIIPVEEL------PLEKAPV 519

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS- 610
              L    T+ + L+S  G+ Y +     L G             +  + IV AF+ +  
Sbjct: 520 VNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-------SREEKIVGAFIREKF 572

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK-VTGDHVAVVGENRK 669
             +LL+ + KG    +  +E     + G   +K++  +++  +   V   H+ +  +  +
Sbjct: 573 GNRLLLATKKGYVKKIPLAEFEYKAQ-GMPIIKLTEGDEVVSIASSVDETHILLFTKKGR 631

Query: 670 LLIFSIDQIPE-MSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           +  FS+ ++P      +GV+    +    +  +     E    +    +   +  +    
Sbjct: 632 VARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGE-PYLLVITAKGRVKKISHEEI 690

Query: 729 WLGKRGGVGS------------LVPK------GFPRSGK 749
               RG  G+            +  K         ++GK
Sbjct: 691 PKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGK 729


>gi|254486349|ref|ZP_05099554.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
 gi|214043218|gb|EEB83856.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
          Length = 764

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 241/729 (33%), Positives = 382/729 (52%), Gaps = 61/729 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V++   +   YL YA+S I  RAIPDLRDG KPVHRRII++M E G+     ++KSA+ 
Sbjct: 25  SVTIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHDKTYRKSAKS 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G  HPHGD ++YD+LVR+AQ F    PLI GQGNFG++DGDSAAA RYTE+R+ +
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VA  +   +D++ V+F D Y+ ++ EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 VASFMTSDLDKETVNFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  ALI+NP+++ E+L+EYI GPDFPTGGI++  R    ++Y  GRG   +RA+  V
Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIML-GRAGARKAYLEGRGSVIMRAKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + I++ EI YQV K+ +IEKIAE +  K+I  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRFAIIIDEICYQVNKASMIEKIAEQVREKKIEGIAHVQDESDRNGVRVVIELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               +++M  ++  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR++F
Sbjct: 324 DATAEVVMNQLYRFTPMQTYFGCNMLALN-GGRPEQLTLRKFLTYFIDFREDVVARRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------------------- 412
            ++    R  IL GL +A  NIDE++A IR+                             
Sbjct: 383 LLRKARERSHILCGLAVAVTNIDEVVATIRSSADAAEAREKLMTRRWPAESILPYIALID 442

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L S +
Sbjct: 443 DPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +  + I+ E+ EVK+ F+       RRT   + S        + +I +E + V +++ G+
Sbjct: 503 RIMSIISDELAEVKDQFAVP-----RRTEIVDWSGDMD---DEDLIAREDMVVTVTSGGY 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     +S +  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 555 IKRTPLVDFRSQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 582 S--GRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S G     + S+   
Sbjct: 615 QGSRTSKGKAIVNILPIPVGVSIAAIMPVDRDEAEWDDLQVVFATSAGTVRRNKLSDFTN 674

Query: 634 NTRKGKTFLKVSSEE---KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
             R GK  +K   +     +         D V +V  + + + F    +    SR   GV
Sbjct: 675 VMRNGKIAMKFEDDHAETTLINARIASNDDDVMLVTNSGRAIRFPATDVRVFNSRASVGV 734

Query: 688 RLQSYKDGG 696
           R        
Sbjct: 735 RGIKLNGDE 743



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 24/100 (24%), Gaps = 5/100 (5%)

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           +++  +      D V  V     +    +       RG KGV     K+  +     F  
Sbjct: 535 DDEDLIAR---EDMVVTVTSGGYIKRTPLVDFRSQRRGGKGVSGMQTKEEDVVT-TLFVA 590

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 +                  G R   G  +    P
Sbjct: 591 NTHTQLLFFTTDGMVYKLKTWRLPQGSRTSKGKAIVNILP 630


>gi|9971918|gb|AAG10480.1|AF279106_42 predicted topoisomerase IV subunit A [uncultured marine gamma
           proteobacterium EBAC31A08]
          Length = 749

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 449/750 (59%), Gaps = 22/750 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++E + ++SL+   EE YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD G+ +
Sbjct: 1   MKEQITSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+VIGK HPHGD + Y+++V +AQ F  +YP + GQGN+G+ D   S AA RY
Sbjct: 61  KKSARTVGDVIGKFHPHGDGAAYEAMVLMAQNFSFKYPFVDGQGNWGSQDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+++T+ A L++  +    VD++  ++    EPV+FP+K P++L NGTSGIAVGMAT I
Sbjct: 121 TESKLTKFANLLISELKSGTVDWQPNFDGSLLEPVIFPAKLPSILLNGTSGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           PSHN+ EI +A + LIDNP+  +  LL+ I GPDF     I+ S++ + E Y  G+GGF+
Sbjct: 181 PSHNINEIIDATVHLIDNPKSQLVDLLKIINGPDFSNNSPIIASKDELNEIYSTGKGGFK 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
            +A+W      +    I++  +PYQ   S+++E+IA+ ++ K+IP++ D+ DE       
Sbjct: 241 AQAQW-----AQDKNQIIINALPYQASGSKILEQIADQMLKKKIPMVVDLTDEGDHKEPV 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K+  ++ + +M  +F  +D++  + +NMN++S+   P+V  L  +LKEWL  R+
Sbjct: 296 RLVITLKSNRVNAEDVMNHLFASTDLQKNYRVNMNLISLKGGPKVFSLVDLLKEWLVFRK 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           E + R+   R+  ++ R+ IL+GLLI YL++D++I IIR  D+PK  +++ F L++ Q +
Sbjct: 356 ETVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKDIITAFKLSDIQAN 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RLR L KLE+ +++ E D L+AE+  I+ +L+S  +    I  E+ E+K+ F   
Sbjct: 416 AILEIRLRQLAKLEQIKLEQERDTLVAEQTDIEKILSSKTRLKTLIKNELIEIKDEFG-- 473

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                 R +    +   K   ++  +  EPITVV+S  GWIRS K H +D S+L ++  D
Sbjct: 474 ----EVRXSPIREATEAKVFSEEETLVTEPITVVLSAAGWIRSAKGHEIDPSSLSYRGED 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            L+      +    + L ++GKAY+L + +L S RG G+ I   +  +     +++ + +
Sbjct: 530 VLQDYGRGKSNQVSVFLDSNGKAYSLASHSLPSARGMGDPITGRVSADSGVKFISSLIGN 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGEN 667
              K +++++ G  +I E   +++N + GK F+K+  E  +   +KV  DH  +A V   
Sbjct: 590 DEDKFMIMNTAGYGYISEFKNMVSNKKSGKAFMKIPHEADLLKAIKVRDDHLYIAAVSNI 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK------DGGISDVICFKICEGLTWIDSAGRSYNR 721
            +LLIF ID++P + +GKG ++ +           +              I+S  R    
Sbjct: 650 GRLLIFKIDELPTLGKGKGNKIINIPTAKFIAKEELMTHAQLVSEASSLRIESGKRFLTL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              DL  ++  R   G+++P+G+ +  K +
Sbjct: 710 KLKDLENYISTRAKRGNMLPQGYRKVDKMI 739


>gi|78484729|ref|YP_390654.1| DNA topoisomerase IV subunit A [Thiomicrospira crunogena XCL-2]
 gi|78363015|gb|ABB40980.1| DNA topoisomerase IV subunit A [Thiomicrospira crunogena XCL-2]
          Length = 742

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 266/746 (35%), Positives = 429/746 (57%), Gaps = 20/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E ++  S+    E+ YL YA+  I +RA+P + DG KPV RRII+AMSE+GL   A 
Sbjct: 6   INYEGIEQQSVAQFTEKAYLDYAMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKSTAK 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
            KKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G++D   S AA R
Sbjct: 66  HKKSARTVGDVLGKFHPHGDSACYEAMVLMAQDFSFRYPLVDGQGNWGSVDDPKSFAAMR 125

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA++++ ++L+L+   +  VD+   ++   +EP V P++ P++L NGTSGIAVGMAT 
Sbjct: 126 YTEAKLSKFSQLLLEETAQGTVDWVPNFDGSLNEPSVLPARVPHVLLNGTSGIAVGMATD 185

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+  A +AL+DN  ++ ++L E++ GPD+P   +++      +  Y  G G  
Sbjct: 186 IPPHNLREVVNACVALLDNQNLTTQELCEHLPGPDYPNNALVITPAAERLRLYETGSGSI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R RA + VEE       +V+  +P+QV  ++++E+IA  + AK++P++ D+RDES  +  
Sbjct: 246 RQRANYFVEEG----VNVVIDALPFQVSGAKVLEQIASQMRAKKLPMVVDLRDESDHENP 301

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  +++ +D +  M  +F  +D+E  + +N+NV+ +   PQV  L  +L EWL +R
Sbjct: 302 IRLVVELRSKRVDVEAAMLHLFATTDLERSYRVNLNVIGLNGRPQVKSLKTMLTEWLVYR 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            E + RR   R+  +  R+ IL GLLIA+LNIDE+IAIIR EDKPKPV++ RF L++ Q 
Sbjct: 362 TETVRRRLQHRLDKVLARLHILDGLLIAFLNIDEVIAIIREEDKPKPVLMERFGLSDTQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +A+L L+LR L KLEE +I+ E + L AE++KI+ +L S  +    +  E+    E +  
Sbjct: 422 EAVLELKLRQLAKLEEMRIRGEQEELEAERKKIEKILGSAARMKTLVKKELLSDAEAYGD 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   +  +A +A  +Q ++  E ITVV+S  GW+R+ K H VD   L +K G
Sbjct: 482 -----DRRSPLSDAKQA-QAMSEQDLLPSESITVVLSENGWVRAAKGHDVDGRTLGYKSG 535

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+        +    + L   G+AY+LPA +L S R HGE +   +            + 
Sbjct: 536 DAFCSQALGQSRQLSVFLDDTGRAYSLPAHSLPSARSHGEPLTGRLSPASGAKFKQVMLG 595

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGEN 667
               + ++ SS G  FI E   + +  + GK  + +    ++    +V   + V VV + 
Sbjct: 596 QPKEQYVLASSAGYGFITELENLYSKNKAGKAAISLPKGSELLAPARVEAENWVMVVTDE 655

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS---EN 724
            ++L+F + ++P +S+GKG +L     G     I F    G      AG+ Y++S     
Sbjct: 656 PRMLVFEMSELPVLSKGKGNKLMQMPKGVSVKAI-FAFKPGQKVEVVAGK-YSKSFGATA 713

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +   R   G  +P+    + + 
Sbjct: 714 IEEAF-SNRAKRGIPLPRTLKNTNEI 738


>gi|160872377|ref|ZP_02062509.1| DNA topoisomerase IV, A subunit [Rickettsiella grylli]
 gi|159121176|gb|EDP46514.1| DNA topoisomerase IV, A subunit [Rickettsiella grylli]
          Length = 749

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 266/742 (35%), Positives = 422/742 (56%), Gaps = 24/742 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR   E+ YL Y++S I +RA+P + DG KPV RRII+AMSE+GL   A  KKSAR VG+
Sbjct: 16  LRSFTEKAYLDYSMSVILDRALPHIGDGLKPVQRRIIYAMSELGLTALAKHKKSARTVGD 75

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVA 140
           V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G+ D   S AA RYTE+R+T+ A
Sbjct: 76  VLGKFHPHGDNACYEAMVLMAQAFSYRYPLIDGQGNWGSQDDPKSFAAMRYTESRLTRYA 135

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  + +  VD+   ++    EP   P++ PN+L NG SGIAVGMAT IPSHN+ E+ 
Sbjct: 136 HALLTELSDGTVDWLPNFDATLEEPKRLPARLPNILLNGASGIAVGMATDIPSHNLIEVV 195

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            A + L+D P  ++  L   I GPDFP+   I+  R  +   Y+ G G  R RA +    
Sbjct: 196 NACIRLLDEPNTTLTDLCALIQGPDFPSAAEIITPRSEMCTIYQQGHGVIRARAIY---- 251

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNR 318
                  I++T +PYQV  +++IE+IAE I  K++PL++D+RDES  +   RIV+ P++ 
Sbjct: 252 -REEKNQIIITGLPYQVSGAKIIEQIAEQIRDKKLPLIDDLRDESDHESPTRIVIIPRSS 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +D D LM+ +F  +D+E  + +N+N++ +   PQV  L  IL+EWL +R+  + +R  F
Sbjct: 311 RVDTDALMDHLFATTDLERSYRINLNMIGLDGRPQVKNLRAILQEWLEYRQTTVKKRLEF 370

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
            +  I +R+ +L+G LI Y ++DE+I +IR  D PK  ++  + L++ Q DAIL +RLR 
Sbjct: 371 HLNKILQRLHLLEGFLIVYCHLDEVINLIRQVDDPKTQLMRHYKLSDIQADAILEIRLRQ 430

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L KLEE ++++E  +L+AE++ +  +L+S  Q    I  E++E  + +        RR+ 
Sbjct: 431 LAKLEEIKLRAEQKSLIAERDNLQKILSSKTQLKRLIRSELQEDAKRYGD-----LRRSP 485

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
           F E   A      + +  + P+TV++S RGWIR+ K H  D+S L FK GD+LK  +   
Sbjct: 486 FVERRAAQALQKTEIISSE-PMTVILSTRGWIRAAKGHDFDVSGLSFKAGDALKSTVLGR 544

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
           +   ++L+ + G++Y+ P  +L S R  GE +    +        +    +    ++V S
Sbjct: 545 SNQLLVLMDSTGRSYSTPLHSLPSARSSGEPLTSRFNPPPGVQFESMISGNPDQAIVVSS 604

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVAVVGENRKLLIFSI 675
             G  FI + SE+ +  R GK+ LK+S+      +  +  +   +VA+      LLI S 
Sbjct: 605 DAGYGFITQLSEMYSKNRNGKSLLKLSAHAHVLPLLALNAIDSSYVALATNTGYLLIISA 664

Query: 676 DQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            ++P++SRGKG ++          ++  I+ +           + S  +       D + 
Sbjct: 665 YELPQLSRGKGNKMMQISSKKREQREEFIAKITSLPSKNSSLLLTSGKKQVVWKARDWIH 724

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
           + GKRG  G  +P+G  +    
Sbjct: 725 YRGKRGQRGRKLPRGLQKLDSL 746


>gi|194290251|ref|YP_002006158.1| DNA topoisomerase iv subunit a [Cupriavidus taiwanensis LMG 19424]
 gi|193224086|emb|CAQ70095.1| DNA topoisomerase IV, subunit A [Cupriavidus taiwanensis LMG 19424]
          Length = 780

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 281/762 (36%), Positives = 424/762 (55%), Gaps = 36/762 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +     EE   +++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL 
Sbjct: 5   DITFQPEEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLR 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
             A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AA
Sbjct: 65  ADAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T ++ L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGM
Sbjct: 125 AMRYTEARLTPISRLLLDEIDEGTVDFIPNYDGSMQEPKLLPARLPFVLLNGASGIAVGM 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN++E+  A +A+I NP I++ +LL  + GPD+P GG I+     I + Y  GR
Sbjct: 185 ATEIPPHNLREVAAATVAMIRNPNIALAELLALMPGPDYPGGGQIISPAADIAQIYENGR 244

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---------- 297
           G  +VRARW +EE+ RG W +VVTE+P      +++E+I E+   K              
Sbjct: 245 GSLKVRARWTIEEMARGQWQLVVTELPPNTSAQKVLEEIEEITNPKIKTGKKALTPDQQQ 304

Query: 298 --------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
                   L+ +RDES     VR+V  PK++++D    ++++   + +E+  P+N+ ++ 
Sbjct: 305 LKATVLAVLDAVRDESGKDAPVRLVFEPKSKNIDQQEFIQTLLAHTSLESGAPINLVMIG 364

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
               P+   L  IL EW+A R + + RR+  R+  ++ R+ IL+G ++  LNIDE+I II
Sbjct: 365 TDGRPRQKGLREILGEWIAFRFDTVTRRTRHRLGKVEDRIHILEGRMLVLLNIDEVIRII 424

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R  D+PKP +V  F L++ Q + IL +RLR L +LE  +I+ EL  L  E+  +D LL S
Sbjct: 425 RESDEPKPALVEAFGLSDRQAEDILEIRLRQLARLEAIRIEKELKELREEQADLDVLLKS 484

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                 +I  EI    + +S   D   RRT   E  RA      +  +  EP+TVV+S +
Sbjct: 485 ETMMRRRIIKEIETDAKQYS-PEDKDPRRTLIQEERRAAA----EVRVIDEPVTVVMSQK 539

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           GW+R+ + H  D     FK GD+L       T D +L+  T+G+ Y++P  +L  GRG G
Sbjct: 540 GWVRTRQGHGHDPQQFTFKAGDALYNTFDCRTVDVLLVFGTNGRVYSVPVSSLPGGRGDG 599

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             I  LI+L     +   F  +++ ++L+ ++ GN F     ++    + GK+FL +   
Sbjct: 600 VPITTLIELQSGSQVAHTFAGNASQRVLIATANGNGFQTTVGDMTGRQKGGKSFLTLDDG 659

Query: 648 EKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFK 704
           +       +  +  H A +  N +LL+ +++++  +S  G+GV L   +           
Sbjct: 660 DAPLAPAPIGEEATHAACLSGNGRLLLVALEEVKVLSAGGRGVILMELEPKEKLLQAVAV 719

Query: 705 ICEGLTWIDSAGRSYNRSEN------DLLGWLGKRGGVGSLV 740
              GL  +  AGR   +  +       LL ++GKR   G  +
Sbjct: 720 GAPGL-VLSGAGRG-GKPSSQKLAGQSLLPYVGKRARKGKQL 759


>gi|119713194|gb|ABL97262.1| DNA topoisomerase IV subunit A [uncultured marine bacterium
           EB0_50A10]
          Length = 753

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 450/750 (60%), Gaps = 24/750 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++   ++SL+   EE YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD G+ +K
Sbjct: 4   QDQTNSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+ D   S AA RYT
Sbjct: 64  KSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+++T+ A+L++  +    VD++  ++    EPV+FP+K P++L NGTSGIAVGMAT IP
Sbjct: 124 ESKLTKFADLLISELKSGTVDWQPNFDGSLLEPVIFPAKIPSILLNGTSGIAVGMATDIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+ +A +  ++NP+  ++ L + I GPDF     I+ S E ++E Y  GRGGF+ 
Sbjct: 184 SHNINEVIDATIHTLENPKAELKDLTKIIKGPDFSNEAPIIASFEELLEIYSTGRGGFKA 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           +A W  E+       I++  +PYQ   S+++E+IA+ ++ K+IP++ D+ DE       R
Sbjct: 244 QAHWTQEK-----NEIIINALPYQASGSKILEQIADQMLKKKIPMVIDLADEGDHKEPVR 298

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K+  ++   +M  +F  +D++  +  NMN++S+   P+V  L  ++KEWL  R+ 
Sbjct: 299 LVITLKSNRVNAQDVMNHLFASTDLQKNYRANMNLISLKGGPKVFTLVELIKEWLVFRKN 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            + R+   R+  ++ R+ IL+GLLI YL++D++I IIR  D+PK  ++  F L++ Q +A
Sbjct: 359 TVTRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKEIIKAFKLSDIQANA 418

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RLR L KLE+ +++ E D LL E+ KI+ +L S  +    I  E+ E+K+ F +  
Sbjct: 419 ILEIRLRQLAKLEQIKLEQERDTLLEEQNKIEKILGSKTRLKTLIKNELLEIKDEFGE-- 476

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               R++   E S A K   ++  +  E ITVV+S  GWIRS K H +D S+L ++  D 
Sbjct: 477 ---DRKSPIKESSEA-KVFSEEETLVTESITVVLSEAGWIRSAKGHEIDPSSLSYRGEDK 532

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L+      +    + L ++GKAY+LP+ +L S RG G+ I   +  +     ++  + + 
Sbjct: 533 LQDFCRGKSNQLSVFLDSNGKAYSLPSYSLPSARGMGDPISGRVSADSGVKFISTLIGND 592

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV--AVVGENR 668
             K +++++ G  +I E   +++N + GK F+K+ +E ++   ++V  DHV  A V    
Sbjct: 593 DDKYMIMNTAGYGYISEFKNMVSNKKSGKAFMKLPNEAQLLKALRVREDHVYIAAVSNIG 652

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +LLIF I+++P + +GKG ++ +        K+  ++          L   +S  R    
Sbjct: 653 RLLIFEINELPVLPKGKGNKIINIPTSKFVAKEEYMAHAQLISPSSSLRV-ESGKRFLTL 711

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              DL  ++  R   G+++P+G+ +    +
Sbjct: 712 KLKDLENYISSRAKRGNMLPQGYRKVDNMI 741


>gi|113868626|ref|YP_727115.1| DNA topoisomerase IV subunit A [Ralstonia eutropha H16]
 gi|113527402|emb|CAJ93747.1| Topoisomerase IV subunit A [Ralstonia eutropha H16]
          Length = 780

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 281/760 (36%), Positives = 422/760 (55%), Gaps = 36/760 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +     EE   +++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL 
Sbjct: 5   DITFQPEEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLR 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
             A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AA
Sbjct: 65  ADAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T ++ L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGM
Sbjct: 125 AMRYTEARLTPISRLLLDEIDEGTVDFAPNYDGSMQEPRLLPARLPFVLLNGASGIAVGM 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN++E+  A +A+I NP I++ +LL  + GPD+P GG I+     I + Y  GR
Sbjct: 185 ATEIPPHNLREVAAATVAMIRNPNITLAELLALMPGPDYPGGGQIISPASDIAQIYEGGR 244

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---------- 297
           G  +VRARW +EE+ RG W +VVTE+P      +++E+I E+   K              
Sbjct: 245 GSLKVRARWTIEEMARGQWQLVVTELPPNTSAQKVLEEIEEITNPKIKTGKKALTQDQQQ 304

Query: 298 --------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
                   L+ +RDES     VR+V  PK++++     + ++   + +E+  P+N+ ++ 
Sbjct: 305 LKATVLAVLDAVRDESGKDAPVRLVFEPKSKNVGQQEFIHTLLAHTSLESGAPINLVMIG 364

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
               P+   L  IL EW+A R + + RR+  R+  ++ R+ IL+G ++  LNIDE+I II
Sbjct: 365 TDGRPRQKGLREILSEWIAFRFDTVTRRTRHRLGKVEDRIHILEGRMLVLLNIDEVIRII 424

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R  D+PKP ++  F L++ Q + IL +RLR L +LE  +I+ EL  L  E+  +D LL S
Sbjct: 425 RESDEPKPALIEAFGLSDRQAEDILEIRLRQLARLEAIRIEKELKELREEQADLDVLLKS 484

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                 +I  EI    + +S   D   RRT   E  RA      +  +  EP+TVV+S +
Sbjct: 485 ETMMRRRIIKEIETDAKQYS-PEDKDPRRTLIQEERRAAA----EVRVIDEPVTVVMSQK 539

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           GW+R+ + H  D     FK GD+L       T D +L+  T+G+ Y++P  +L  GRG G
Sbjct: 540 GWVRTRQGHGHDAQQFTFKAGDALYGTFECRTVDVLLVFGTNGRVYSVPVASLPGGRGDG 599

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             I  LI+L     +   F   +  ++L+ ++ GN F  +  ++I+  + GK+FL +   
Sbjct: 600 VPITTLIELQSGSQVAHTFAGSAEQRMLIATAGGNGFQTKVGDMISRQKGGKSFLTLDDG 659

Query: 648 EKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFK 704
           +       +  +  HVA +  N +LL+ ++D++  +S  G+GV L   +           
Sbjct: 660 DTPLAPAPIGDEATHVACLSGNGRLLLVALDEVKVLSAGGRGVILIELEPKEKLLQAVGV 719

Query: 705 ICEGLTWIDSAGRSYNRSEN------DLLGWLGKRGGVGS 738
              GL  +  AGR   +  +       L  ++GKR   G 
Sbjct: 720 GAPGL-MLSGAGRG-GKPTSQKLAGVALQAYVGKRARKGK 757


>gi|73916228|gb|AAZ92982.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 774

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 225/712 (31%), Positives = 369/712 (51%), Gaps = 29/712 (4%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG
Sbjct: 1   GMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGDSAAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG
Sbjct: 61  SMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I
Sbjct: 121 ATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  G+G   +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  + 
Sbjct: 180 HKAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGIT 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            +RDES  +    +    R    ++++ ++F ++ M+T F     +     +P+++ L  
Sbjct: 240 AVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-- 417
           IL  ++ H++EV+ RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +        
Sbjct: 299 ILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAE 358

Query: 418 -VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            +S+F L+E Q  AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I 
Sbjct: 359 LMSKFKLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIK 418

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ EVK  FS      +RRT    +     +   + +IE+  + + +SNRG+I+     
Sbjct: 419 DELDEVKRKFSD-----KRRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQD 471

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
                K     +     K+ D ++  +   T D +L  +  G+ Y L    +       +
Sbjct: 472 EFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAK 531

Query: 589 --AIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
              +  L+ L+ ++ I T    +        L   +  G        E     + G   L
Sbjct: 532 GLPVVNLLKLDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKAL 591

Query: 643 KVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            +  E+++  V+   GD  + +  +    + F+   +  MSR   GV+  + ++G     
Sbjct: 592 NLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVG 651

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               I +    +    + Y +           RGG G    K   ++G    
Sbjct: 652 ASL-ITDQDEVLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 702


>gi|323144455|ref|ZP_08079058.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066]
 gi|322415770|gb|EFY06501.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066]
          Length = 983

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 234/848 (27%), Positives = 387/848 (45%), Gaps = 99/848 (11%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
             D I  ++  V  NV  V L   L++ ++ YA+S I +RA+PD+RDG KPVHRR+++ M
Sbjct: 39  SDDGIDTASQSVSANVATVKLEDELKKSFIDYAMSVIVDRALPDVRDGLKPVHRRVLYDM 98

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            ++ +      KKSAR+VG+VIG+ HPHGD +VY+++VR+AQ F  R PLI GQGNFGNI
Sbjct: 99  YDLKIWHNGQTKKSARVVGDVIGRFHPHGDAAVYETIVRMAQWFSMRAPLIFGQGNFGNI 158

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE RMT++AE++LQ +D++ VD    Y+  +  P V P++FPNLL NG+S
Sbjct: 159 DGDGPAAMRYTEVRMTKIAEMMLQDIDKETVDTYPNYDGNEQIPEVLPTRFPNLLVNGSS 218

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +AL+DNP++ ++ L+ YI GPDFPTGG IV     I E
Sbjct: 219 GIAVGMATNIPPHNLGEVIDGTVALLDNPDLGLDDLMRYIPGPDFPTGGFIV-GNAGIRE 277

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG   +RAR  +EE   G   I V EIPY V KS ++++IAEL+  K+I  + ++
Sbjct: 278 AYRTGRGRCIMRARTHIEEDKSGRKTIYVDEIPYVVNKSAIVKQIAELVRDKKIEGISEV 337

Query: 302 RDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            D S +D +  +     R    + ++ ++F  + +++ FP+NM  L     P+ +PL  I
Sbjct: 338 NDLSDKDNQVRIAIDLKRDAYEEAVLNNLFERTSLQSSFPINMIALVH-NHPRQLPLKEI 396

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---- 416
           L E++  RREV+ RR+ + ++   R+  + +GL++A  NI++I+ +I +           
Sbjct: 397 LSEFINFRREVVTRRTVYLLRQDRRKAFLDEGLIVAKANINKIVDMITDSANADEARRRL 456

Query: 417 -----------------------------------MVSRFSLTENQVDAILNLRLRSLRK 441
                                                 ++ L+E Q  AIL L+L+ L  
Sbjct: 457 MEEPWDGTLISSLIERTEEGFNICLPSGIDPKAGLHDDKYYLSEEQARAILALQLQRLTH 516

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           L   +I+++   L+   +    +LN+  +    I  E+ EVKE F+              
Sbjct: 517 LAGDEIQADYKALIENIKGYLEILNNPVRMNEVIRGELIEVKEAFADKRRSDFTEDYGKL 576

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
                 A     +   +   +   +     + +       A   K+ D +      +T D
Sbjct: 577 SKADFIAPQDVIVTLSQEGYIKYQDISTYEAQQRGGKGRQAAKLKDDDFISRMAVTNTHD 636

Query: 562 RILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
            ++  +  G+ +     +     +    G  IQ +  +   + I        +D    ++
Sbjct: 637 TLMCFTDKGRVFASKVFDLPTSENRTWRGRPIQNIFKIEEGEKITALLPVSEFDENHFII 696

Query: 616 VVSSKGNAFIVEESEIIANTRK----GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKL 670
           + +  G    V+ S   +  ++        + +   + +      +G D V V   + + 
Sbjct: 697 MATVMGYIKKVKLSAFKSFMQRVNDQAIKAITLREGDSLMGAEISSGDDDVFVFSSDGQC 756

Query: 671 LIF------------SIDQ------------------------------IPEMSRGKG-V 687
           +                                                I    RG G +
Sbjct: 757 IRICEFYNKKDVADNDESDDDGAEPEVEENEDQSSEGEVKVVDRHAGQGIRPSGRGSGAL 816

Query: 688 RLQSYKDGGISDVICFKICEGL--TWIDSAGRSYNRSENDLLGWL-GKRGGVGSLVPKGF 744
           R+   + G  +  +     +      +      Y +        L   RG  G       
Sbjct: 817 RIIKLRPGQTAVSLILLSVDETDPEAVMVTANGYGKRILLTDIPLRMNRGSSGVKTMSHM 876

Query: 745 PRSGKFLS 752
            R+GK + 
Sbjct: 877 DRNGKLVG 884



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 11/139 (7%)

Query: 618 SSKGNAFIVEESEIIANTRKG-----KTFLKVSSEEKMKLVVKVTGDH----VAVVGENR 668
           SS+G   +V+          G        +K+   +    ++ ++ D       +V  N 
Sbjct: 790 SSEGEVKVVDRHAGQGIRPSGRGSGALRIIKLRPGQTAVSLILLSVDETDPEAVMVTANG 849

Query: 669 KLLIFSIDQIPE-MSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
                 +  IP  M+RG  GV+  S+ D     V   +      ++      +       
Sbjct: 850 YGKRILLTDIPLRMNRGSSGVKTMSHMDRNGKLVGVVRSDINSDYLVITDLGHMTRTPVS 909

Query: 727 LGWLGKRGGVGSLVPKGFP 745
              L  R   G +V + + 
Sbjct: 910 NLPLPGRTAGGVIVMRPYE 928



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 21/203 (10%)

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           +    V S+ G    +             E D           +         K     A
Sbjct: 744 DDDVFVFSSDGQCIRICEFYNKKDVADNDESDDDGAEPEVEENEDQSSEGE-VKVVDRHA 802

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIAN 634
           G  +   G G     +I L   Q  V+  +    ++  + ++V++ G    +  ++I   
Sbjct: 803 GQGIRPSGRGSGALRIIKLRPGQTAVSLILLSVDETDPEAVMVTANGYGKRILLTDIPLR 862

Query: 635 TRKGKTFLK----VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL 689
             +G + +K    +    K+  VV+        V+ +   +    +  +P   R  G   
Sbjct: 863 MNRGSSGVKTMSHMDRNGKLVGVVRSDINSDYLVITDLGHMTRTPVSNLPLPGRTAG--- 919

Query: 690 QSYKDGGISDVICFKICEGLTWI 712
                     VI  +  EG + I
Sbjct: 920 ---------GVIVMRPYEGESII 933


>gi|317128926|ref|YP_004095208.1| DNA topoisomerase IV, subunit alpha [Bacillus cellulosilyticus DSM
           2522]
 gi|315473874|gb|ADU30477.1| DNA topoisomerase IV, A subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 834

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 215/748 (28%), Positives = 388/748 (51%), Gaps = 23/748 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM          F+
Sbjct: 4   KERYLDLPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYTDRNTSDKPFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVYD+++R +Q +  R+ L+   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYDAMIRQSQDWKMRHLLVQMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ +++D VDF   +++   EPVV PS+FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSAISAELLKDIEKDTVDFMLNFDDSLEEPVVLPSRFPNLLVNGSTGISSGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +AA+  +++P+ +++ L+++I GPDFPTGG I    + + ++Y  G+G   +R
Sbjct: 184 HHLGEVIDAAIHHMEHPDSTVDDLMKHIKGPDFPTGGTIQ-GVDGLKKAYETGKGKIVLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E+V  G   IV+TEIPY+V K+ L++++ EL I K++  + ++RD++      ++
Sbjct: 243 GKAEIEDVRGGKQQIVITEIPYEVNKANLVKRMDELRIDKKVDGIAEVRDDTDRTGLRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D   ++  ++  +D++  +     V    + P+++ L  +L+ ++ H++EV+ 
Sbjct: 303 VELKKEADSKGILHYLYKNTDLQVSYNF-NMVAIFNKTPKLLGLKHMLEAYINHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F +     R  I++GL+ A   +DE+I  IR        K  +   +  TE Q +A
Sbjct: 362 RRTKFDLNKAKERAHIVEGLIKAISILDEVIQTIRASKDKKDAKDRLQDMYQFTEPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L    EK++++L+S K   N+I  E++E+K+ ++++ 
Sbjct: 422 IVTLQLYRLTNTDVTTLEEEASELKKLIEKLEAILSSEKNLINEIKRELKEIKKKYAEA- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R T  E    D     + +I  E + V ++  G+++     S    +      KE
Sbjct: 481 -----RRTVIEQEIEDLKINLEVVIPSEDVRVTVTKEGYVKRSSLRSYAASNGEPPGMKE 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTA 605
            D L  +L  +TTD +LL +  G    LP   L   R     + +  L+ ++++ DI+TA
Sbjct: 536 TDRLLYSLEINTTDTLLLFTRKGSFLFLPVHQLPEIRWKDSGQHVANLVAMDNDDDILTA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                ++ +  +L  +  G       SE  A    K    +K+  ++++  V    G H 
Sbjct: 596 IPVKEFNDSEYVLFATKLGMVKKTVLSEYKAQRNSKALMAVKLKKDDEVISVTLSDGTHD 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
           +         L F+ +++     R  GV+  + K    +   + FK            R+
Sbjct: 656 IFFATHTGYGLWFTEEEVSATGQRTAGVKAINLKKDDFVVSCMSFKEESPPDLFLVTQRA 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +     +     R   G ++ K   R
Sbjct: 716 AYKKMKLNVFEKTSRAKRGLVMLKELKR 743


>gi|237653593|ref|YP_002889907.1| DNA topoisomerase IV subunit A [Thauera sp. MZ1T]
 gi|237624840|gb|ACR01530.1| DNA topoisomerase IV, A subunit [Thauera sp. MZ1T]
          Length = 814

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 270/749 (36%), Positives = 414/749 (55%), Gaps = 34/749 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E  YLAYA+S +K RA+P + DG KPV RRI+ AM+EM L   +   KSAR+V
Sbjct: 67  LALDRYAERAYLAYAMSVVKSRALPQVEDGLKPVQRRILFAMNEMRLSSTSKHVKSARVV 126

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD SVYD++VR+AQ F  RYPL+ GQGNFG+ DGDSAAA RYTE R+T +
Sbjct: 127 GDVIGKYHPHGDSSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTPI 186

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L  +D   VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E+
Sbjct: 187 AELLLSEIDRGTVDFIPNYDGAFEEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLREV 246

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA   LI +PE +++ +L  + GPDFP GG ++ + ++I E+Y  GRG  R+RARW +E
Sbjct: 247 AEATCHLIRHPEATLDDVLAMLPGPDFPGGGQLISTPQTIREAYATGRGSLRLRARWKIE 306

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDI 301
           E+ RG W  +V E+P+ V  ++++ +I  L   +                      L+ +
Sbjct: 307 ELARGQWRAIVEELPHGVSAAQVLSEIETLTNPQPRAGKKEVSQEQKNLRQLVLGALDTV 366

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES++   VRIVL PK+   + D  M  +   + +ET   +NM ++     PQ   L  
Sbjct: 367 RDESSDKAPVRIVLEPKSSRQNRDEFMAVLLAHTSLETSASVNMTMIGRDGRPQQKNLVQ 426

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL+EW+  R   + RR+  R+  +DRR+ IL+G +IA+L+I+E+I +IR  D+PKP +++
Sbjct: 427 ILREWIDFRYVTVERRTRHRLDEVDRRIHILEGRMIAFLHIEEVIRVIRESDEPKPALIA 486

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L++ Q + IL +RLR L +LE ++I+ EL  L  E+  +  LL+S       I  EI
Sbjct: 487 AFGLSDVQAEDILEIRLRQLARLEGFKIEKELAELKDERAGLQHLLDSRAAMTKLILKEI 546

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           ++  + +        RRT    V         +  +  EP+TV++S  GW+RS + H +D
Sbjct: 547 QDDAKKYGD-----DRRTL---VEAVAAVAPAEISVPDEPVTVIVSKNGWVRSRQGHGID 598

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            + + +K GD     L   TT  ++++  +G+AYT+    L  GRG G  I  L++    
Sbjct: 599 PAGIAYKAGDFGFAVLETRTTWPLIVIDGNGRAYTVKVSELPGGRGDGAPITTLVEFQDG 658

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             +               +S G  F+   ++  +  R GK F+ +   EK+    KV GD
Sbjct: 659 GKLAQVVTDTPDSVYFFANSGGYGFLCSVADASSRQRAGKAFMSLEKGEKVLAPAKVFGD 718

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            +A   EN ++L+F   ++   S G+GV + +  +G     +     + +  ++ +GR  
Sbjct: 719 WIAAASENGRILVFPRPEMKTQSGGRGVIVMALDEGEALAAVAVPADDAVLAVEGSGRGG 778

Query: 720 NRSENDL-----LGWLGKRGGVGS-LVPK 742
                +L          +R   G  L PK
Sbjct: 779 KALTIELKPAQREPLRHRRARKGVPLTPK 807


>gi|86607511|ref|YP_476273.1| type II DNA topoisomerase, A subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556053|gb|ABD01010.1| type II DNA topoisomerase, A subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 819

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 238/753 (31%), Positives = 383/753 (50%), Gaps = 25/753 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
             L+  ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K AR+V
Sbjct: 4   TDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVV 63

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+ ++
Sbjct: 64  GDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRLAEL 123

Query: 140 AE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L+ V E+ VDF   ++   +EP V P++ P LL NG+SGIAVGMAT+IP HN+ E
Sbjct: 124 SHTALLEQVSEEIVDFMPNFDGSQAEPTVLPARLPILLLNGSSGIAVGMATNIPPHNLGE 183

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  LALID+P++S E+LL +I GPDFPTGG I+   + I  +Y  GRG   +R     
Sbjct: 184 VVDGLLALIDHPDLSPEELLRWIPGPDFPTGGQIL-DTQGIRAAYLTGRGSITLRGVARF 242

Query: 259 EEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           EE+  G        +V++E PYQV K+  IEK+AEL    RI  + D+RDES      V+
Sbjct: 243 EEIQPGKGRHRRPALVISEFPYQVNKAAWIEKVAELANQDRISGIADLRDESDRSGIRVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +P  +++ ++ L+ +++ F   +  L     P+ + L  IL+ +L  R   L 
Sbjct: 303 VELKREANPQAVLQQLYKLTPLQSNFGAILLALV-NGEPRQLSLKEILQHFLQFREATLN 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDA 430
           R     +Q + R+ E + G+L+A  +++ +I ++R           + +R   T  Q + 
Sbjct: 362 RMFRAELQQVQRKAEEVAGMLLALADLEGVIELLRQAPDGTTAKAQLQTRLGCTPQQAET 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL + LR L  LE  ++  E   L    E++  LL+  ++  N +  E+R +K+ F    
Sbjct: 422 ILAMPLRRLTGLERERLHQEHAQLQTRIEELQGLLSDRRKLLNYLKKELRHLKKTFGDPR 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---LKSHSVDLSALHFKE 547
                  +  E   A   + ++   E+    +  + +G++R        S    A     
Sbjct: 482 RTQILSASELEAEVAQIPSGEE--TEETHFLLQFTRKGYVRRLPLPSRRSRSNPAQRELG 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            D L           IL+L+  GKA+TLP   +    G    + L+  L + + IV  F 
Sbjct: 540 EDVLVGLECVTLEQEILVLTAGGKAFTLPIAGIPLSTGSSRGVPLVTLLPNPEPIVATFT 599

Query: 608 YDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---- 660
            D       L+V+S +G    +  +E++  T++G T LK+   +++        DH    
Sbjct: 600 LDPDPGKASLVVLSRQGRIKRLALAELMGLTQRGSTVLKLKEGDELGWAALWDPDHQGYS 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +     ++L   + QIP M R   G              +     +G+  + ++   Y
Sbjct: 660 VVLATSGGRVLRLDVQQIPLMGRAAMGSPALRLGRTERIVGMALVPSQGILVL-ASRLGY 718

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +     + +RG VG+       R    + 
Sbjct: 719 LKRLSLEEIPILERGQVGAPAFHFSDRGDVLVG 751



 Score = 42.5 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           ++ G+   L    +             + L   + IV   +  S   L++ S  G    +
Sbjct: 664 TSGGRVLRLDVQQIPLMGRAAMGSP-ALRLGRTERIVGMALVPSQGILVLASRLGYLKRL 722

Query: 627 EESEIIANTRK--GKTFLKVSS-EEKMKLVVKVTGD-------HVAVVGENRKLLIFSID 676
              EI    R   G      S   + +  +V +  +        + V+ E+ ++  FS  
Sbjct: 723 SLEEIPILERGQVGAPAFHFSDRGDVLVGLVGLPPELERPSHLQLDVITESEQVYSFSPA 782

Query: 677 QIPEMSRGKG----VRLQSYKD 694
           +IP  SR  G    V+ +  ++
Sbjct: 783 EIPLQSRSGGGSLLVKGERVRE 804


>gi|289662944|ref|ZP_06484525.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289670196|ref|ZP_06491271.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 747

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 271/755 (35%), Positives = 431/755 (57%), Gaps = 21/755 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGEISQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +      +    IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATY-----KKEHANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F+ +D+E  +  N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA-----RRSPLVQRDAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T ++  L ++G+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLAAVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTAGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI----SDVICFKICEGLTWIDSA 715
            +  V     LL      +PE+ +GKG ++       +       +          + S 
Sbjct: 650 RIVAVTSAGNLLAVPASDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+ + S  DL  ++G R   GSL+P+G+ +    
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGSLLPRGWQKVDGL 744


>gi|299771905|ref|YP_003733931.1| DNA topoisomerase IV subunit A [Acinetobacter sp. DR1]
 gi|298701993|gb|ADI92558.1| DNA topoisomerase IV subunit A [Acinetobacter sp. DR1]
          Length = 739

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 275/745 (36%), Positives = 432/745 (57%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L  +  +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   D++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLNELGQGTTDWQDNFDGSLKEPITLPARIPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI GPD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVIKGTIALIRNPQTSDEKLAEYIPGPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE- 307
            +R+RA + +E+       IV+TE+PYQV  S++I +IA+ + AK++PL+ DIRDES   
Sbjct: 242 SYRMRAVYTIEK-----NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDIRDESDHA 296

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELAAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+     + A     +Q ++  E +TVV+S  GWIR+ K   VD   L+++
Sbjct: 477 GDE-----RRSPIVVRAEA-VQIKEQDLMPAEAVTVVLSEAGWIRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  RI  L   G++Y LP  +L S RG GE +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRIYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
           + D   +L+  S+ G  F  +  ++  N + GKTFL V  + K   ++      H+AV+ 
Sbjct: 591 LEDEESELIAASTSGYGFKTQTKQLDTNAKAGKTFLSVPEKSKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L           +     + +  + +  +      +D
Sbjct: 651 SAGRLLIIDLAELPNLNKGKGNKLIQLDAKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  ++GKR   G L+P+G+ ++ K 
Sbjct: 711 LQKYMGKRASKGQLLPRGYQKANKL 735


>gi|319786528|ref|YP_004146003.1| DNA topoisomerase IV subunit alpha [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465040|gb|ADV26772.1| DNA topoisomerase IV, A subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 747

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 274/756 (36%), Positives = 424/756 (56%), Gaps = 23/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ +        + + LR   E  YL Y++  + +RA+P L DG KPV RRII++MSE+G
Sbjct: 1   MTETIRPAFHGFEQIPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIYSMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +  VD+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTVDWVPNFDGTLEEPSWMPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A + L+D+P+ ++  L E++ GPD+PT   I+ S   +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSACVRLLDDPDATVADLCEHVRGPDYPTEAEIITSPSDLRAMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA W  E         VVT +PYQV  S++IE+IA  +  K++P LEDIRDE
Sbjct: 241 NGTGSVRARATWQKENGN-----FVVTALPYQVSPSKVIEQIAAQMRTKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F  +D+E  + +N+NV+ +   P V  L  +L 
Sbjct: 296 SDHANPVRVVLVPRSNRVDAEQLMGHLFATTDLEKSYRVNLNVIGLDGKPAVKNLRTLLD 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR   R + ++RR+ +L+GLL+A+LN+DE+I IIR ED+P+P +++RF 
Sbjct: 356 EWLTFRTDTVVRRLKHRQEKVERRLHLLEGLLVAFLNLDEVIRIIRTEDEPRPALIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT  Q D IL  RLR L +LEE +I+ E D L  E E+I + L+S  +    +  E+   
Sbjct: 416 LTGEQADYILETRLRQLARLEEMKIRGEQDELARELERIVATLDSKARLKKLVKDELLAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+    +  A  A  +  ++  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA-----RRSPLV-LREAAHAIDETELVPSEPVTVVLSQKGWVRAAKGHDVDAAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++EGD+L  A+ A +T ++  L + G++Y+ PA +L S RG+GE +            
Sbjct: 530 LSYREGDALLGAVRARSTWQVAFLDSHGRSYSTPAHSLPSARGNGEPLTGRFSPASGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
           +     ++  + ++ SS G  F+     +    + GK  + +++   +     V     D
Sbjct: 590 LALASGENDTRFVLASSHGYGFVTRFENLTGRNKAGKALINLATGANVLQPAVVGNPETD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICEGLTWIDS 714
            +  V     LL     ++PE+ +GKG +L            +  V      + L    S
Sbjct: 650 RIVAVTSAGHLLAIPAAELPELDKGKGNKLIDIPRAKLGTERVVAVAAVGPAQKLQV-YS 708

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R+   S  DL  +LG R   G L+P+G+ +    
Sbjct: 709 GQRTMTLSFKDLDTYLGARATRGGLLPRGWQKVDGL 744


>gi|158338824|ref|YP_001520001.1| DNA gyrase subunit A [Acaryochloris marina MBIC11017]
 gi|158309065|gb|ABW30682.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
          Length = 824

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 250/769 (32%), Positives = 409/769 (53%), Gaps = 30/769 (3%)

Query: 6   ISNS-NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +S   N L    V A +L   +E+ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+
Sbjct: 1   MSKQLNLLSSGKVIATALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHEL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL     ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL++G GNFG++D D
Sbjct: 61  GLTPDRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDND 120

Query: 125 SAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE R++ +    +L+ + E  V+F   ++    EP V P++ P LL NG SGI
Sbjct: 121 PPAAMRYTETRLSPIGNQSLLEEIGESTVEFAANFDNSQQEPTVLPAQLPTLLLNGCSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ EI +A +ALID+P++++EKL+  + GPDFPTGG IV  ++ I+++Y
Sbjct: 181 AVGMATNIPPHNLGEIVDALVALIDSPDMTLEKLMALVPGPDFPTGGEIV-GKQGIIDAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             GRG   VRA   +EE+  G        I+VTE+PYQV K+  IEKIA LI   RI  +
Sbjct: 240 TNGRGSITVRAVTSIEEIQPGRGRHRRPVIIVTELPYQVNKAGCIEKIASLINQGRIEGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES  +   ++    R   P  ++E ++ L+ +++ F + M  L    VP  + L 
Sbjct: 300 ADLRDESDREGMRIVIELKREAQPPAVLEQLYRLTPLQSNFGVIMLALV-NGVPLQLSLK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--- 415
            +L+++L  R + L RR   +++    R  +++GL+ A  ++D++I I+R+         
Sbjct: 359 EVLQKFLDFREQTLTRRYQNQLEQAQSRQHLVEGLIKALDHLDDLIEILRHAPDGTTAKV 418

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            + S+F L+ +Q DAIL + +R L  LE+  ++ E D+L  E   ++ LL +  +    +
Sbjct: 419 QLKSQFQLSGSQADAILAMPMRRLTGLEQQNLRQEFDDLAQEIGDLERLLGNRHELLKAL 478

Query: 476 ACEIREVKEIFSKSTDLGRR----RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
             ++R +K+ +S            +T       +D++ + +         + +S      
Sbjct: 479 KKDLRALKKQYSDPRRTVIHGAAAKTEIFAAPVSDESVIVELNQRGYARCMRVSK----- 533

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
              +       L     D          T  +LL +  GKAY +   ++      G+   
Sbjct: 534 RKNNAPDLSGELADVSTDLTIFRHTTELTTDLLLFTGSGKAYGVGLQSIPFTSSKGKGKP 593

Query: 592 LLIDLN---HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           L+  L     + +I+  F+      T +L+++S +G    +  SE    T +G    K+ 
Sbjct: 594 LVTLLPDSGRDDEIIARFLSTEISDTSQLILLSQQGKIKRLPMSEFAEMTSRGLGAAKIK 653

Query: 646 SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           S +++  VVK   + +VA+   + +LL   I +IPEM R  +G ++   +    S V   
Sbjct: 654 SGDQLGWVVKAEQETNVAIATSSGRLLNIPITEIPEMGRTAQGNQVFRLRK-QESIVGLA 712

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +    +  + + Y +     L  LGK G +G+   +   +S   ++
Sbjct: 713 AVRDDADLLLISSKGYCKRLPIDLLRLGKVGDLGTQAMQFMIKSDGLIA 761


>gi|212639274|ref|YP_002315794.1| DNA topoisomerase IV subunit A [Anoxybacillus flavithermus WK1]
 gi|212560754|gb|ACJ33809.1| DNA topoisomerase IV subunit A [Anoxybacillus flavithermus WK1]
          Length = 798

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 230/753 (30%), Positives = 393/753 (52%), Gaps = 26/753 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V  +     L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 2   ERVLDLPFEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYVDGNTSDKPFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEA
Sbjct: 62  SAKTVGNVIGNFHPHGDSSVYEAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ ++++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSAIASELLRDIEKETVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID+P  +++ L+  + GPDFPTGG I++ +E I  +Y  G+G   +R 
Sbjct: 182 HLGEVIDAVIMRIDHPTCTVDDLMTVLKGPDFPTGG-IIQGKEGIKTAYETGKGKIVIRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E+   G   IV+TEIPY+V K+ L++KI EL + K++  + D+RDE+      ++ 
Sbjct: 241 KATIEQGKGGKQAIVITEIPYEVNKANLVKKIDELRLEKKLDGIIDVRDETDRTGLRIVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + + ++  ++  +D++  +     V    R P+++ L  +L  ++ H++EV+  
Sbjct: 301 EVRKDGNAEGILNYLYKNTDLQITYSF-NMVAIHERRPKLLNLPQMLDAYIEHQKEVVAN 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAI 431
           RS + +Q    R  I++GL+ A   +DEIIA IR     K     ++ ++  TE Q +AI
Sbjct: 360 RSRYELQKAKERAHIVEGLMKAVSILDEIIATIRASQDKKDAKTNLMDQYGFTEPQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   + Y ++ E + L  + E++ S+L S K+  + I  E+R++K+ ++    
Sbjct: 420 VTLQLYRLTNTDIYDLREEANALHDKIEQLTSILESEKKLLSVIKSELRKMKKTYADE-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
              RRTT       +       +I +E + V I+  G+I+     S    +   +  KEG
Sbjct: 478 ---RRTTIE-EEIKEIKIEMNVVIPEEDVIVTITKDGYIKRTSLRSYSASNGQDIGMKEG 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAF 606
           D L      +TT  +LL +  G     P   L   R     + I  +I L+ ++ + +A 
Sbjct: 534 DRLLGMFEMNTTHTLLLFTNKGNYLYCPVYELPDIRWKDLGQHISHIIPLDRDEQLTSAI 593

Query: 607 VY--DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVA 662
                    LL ++ +G           A    K    +++  ++++  V +  G  H+ 
Sbjct: 594 PIADFENGYLLFITKQGFVKKTHLVHYKAQRYSKPLVAMRLKEDDEVVNVYQTNGMGHIF 653

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +V +    L+FS ++I E+  R  GV+    KDG   DV+  +       I    R   +
Sbjct: 654 LVTQYGYGLLFSEEEIGEVGVRAAGVKGIHLKDGD--DVVSGQQATDENIILVTKRGAAK 711

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
                   L  R   G L+ K   ++   + +S
Sbjct: 712 KIARAEIELSTRAKRGQLLVKEV-KTNPHRLVS 743


>gi|89070135|ref|ZP_01157464.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516]
 gi|89044252|gb|EAR50398.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516]
          Length = 903

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 250/849 (29%), Positives = 396/849 (46%), Gaps = 118/849 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      +    ++S+   +   YL YA+S I  RAIPDLRDG KPVHRRI++ + E G
Sbjct: 1   MSGDGPRFDGP--SISIEEEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 ++K    VG+V+G+ HPHGD ++YD+LVR+AQ F     LI GQGNFG++DGD 
Sbjct: 59  QTNNKPYRKCGTAVGDVMGRYHPHGDSAIYDALVRMAQDFSMSLTLIDGQGNFGSMDGDP 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AAYRYTE R+ + AE +L  +++D VDF   Y  E  EP V P+++PN+L NG  GIAV
Sbjct: 119 PAAYRYTEGRLEKSAEALLTDIEKDTVDFVPNYANERMEPRVLPARYPNILVNGAEGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP HN+ E+ +A LALIDNP+++ E+L+++I  PDFPTGG ++  R    ++Y  
Sbjct: 179 GMATRIPPHNLGEVVDATLALIDNPDLTTEELIDFIPAPDFPTGG-LILGRSGARKAYTE 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R +   EE+ +  + IV+ EIPYQV K+ +IE+IAE    KRI  +  ++DES
Sbjct: 238 GRGSVVIRCKTRTEEIRKDRYAIVIDEIPYQVNKATMIERIAEAAREKRIEGIAHVQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    R   P++++  +F  + M+  F  NM  L+ G  P+ + L G L  +L
Sbjct: 298 DRHGVRVVIELKRDATPEVVLNQLFRFTPMQVSFACNMLALN-GGKPETLTLRGFLTAFL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------- 412
             R +V+ +R++F +     R  IL GL +A  N+DE++A IR+                
Sbjct: 357 DFREDVVAKRTAFELNKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRW 416

Query: 413 ----------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                            K      ++L++ QV AIL+LRL+ L +L   ++  EL+ L A
Sbjct: 417 PAEEIAPYIRLIDDPTHKMNDDGTYNLSDTQVRAILDLRLQRLTQLGVKEVTDELEALAA 476

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +  +   +L S ++  + ++ E+REV+E  +       RRT   + S   +    + +IE
Sbjct: 477 KIREYLDILGSRERILSIVSDELREVRERHAVP-----RRTEIVDWSGDME---DEDLIE 528

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V ++  G+I+          K     LS    KE D +     A+T  ++L  +T
Sbjct: 529 REDMVVTVTQGGYIKRTALADFRSQKRGGKGLSGGGLKEEDVVTTLFVANTHTQLLFFTT 588

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSK 620
           DG  Y L    L        G+AI  ++ +     I      D          ++  +S 
Sbjct: 589 DGMVYKLKTWRLPLGGRTSRGKAIVNILPIPPGVSIAAIMPVDRDEDEWDDLNIVFATSA 648

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQ 677
           G+      S+     R GK  +K+  +  + LV   +    D V +V +  + + F +  
Sbjct: 649 GDVRRNRLSDFTNVMRNGKIAMKLPEDGSVSLVNARICSEDDDVMLVTDAGRAIRFPVTD 708

Query: 678 IPEM-SR-GKGVRLQSYKDGGISDVICF-----------------------------KIC 706
           +     R   GVR    ++G     +                                  
Sbjct: 709 VRVFSGRSSTGVRGIRLQNGDKVVSMAVIRHFEASPEERVAYLKMRRAQMGMTDETESDD 768

Query: 707 EGL-------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGS----LVPKG 743
           E                       +    +   +  +     +  RGG G        +G
Sbjct: 769 EDQVEAGQLPLDRFAEMSAAENLLLTITAKGQGKLSSSHGYPVRGRGGQGVSATDKAMRG 828

Query: 744 FPRSGKFLS 752
               G  +S
Sbjct: 829 ----GPIVS 833



 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 44/146 (30%), Gaps = 10/146 (6%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
            +   +   +        +     + L+   ++  A        LL +++KG   +    
Sbjct: 753 MRRAQMGMTDETESDDEDQVEAGQLPLDRFAEMSAA-----ENLLLTITAKGQGKLSSSH 807

Query: 630 EIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK 685
                 R G+             +  V  V   D + +V    + +   +D I   SR  
Sbjct: 808 GYPVRGRGGQGVSATDKAMRGGPIVSVFPVELDDQIMLVTNQGQSIRVPVDGISFRSRSA 867

Query: 686 -GVRLQSYKDGGISDVICFKICEGLT 710
            GVR+ +   G     + +   +   
Sbjct: 868 GGVRVFNTAKGEEVVSVAWIAEQADE 893


>gi|294665434|ref|ZP_06730721.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604802|gb|EFF48166.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 747

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 271/755 (35%), Positives = 434/755 (57%), Gaps = 21/755 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRI++AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+D+P+ S+  L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +      +    IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATY-----KKEHANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIIAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA-----RRSPLVQRGAA-QAIDETEMVASEPMTVVLSQKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T ++  L +DG+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLTAVRSRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASCAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI----SDVICFKICEGLTWIDSA 715
            +  V     LL      +PE+ +GKG ++       +       +          + S 
Sbjct: 650 RIVAVTSAGNLLAVPATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+ + S  DL  ++G R   GSL+P+G+ +  + 
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGSLLPRGWQKVDRL 744


>gi|294499299|ref|YP_003562999.1| DNA topoisomerase IV subunit A [Bacillus megaterium QM B1551]
 gi|294349236|gb|ADE69565.1| DNA topoisomerase IV, subunit A [Bacillus megaterium QM B1551]
          Length = 808

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 215/750 (28%), Positives = 377/750 (50%), Gaps = 25/750 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   ERFLDLPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMHVDGNTAEKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD++VR++Q +  R  LI   GN G+IDGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYDAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D+  V+F   +++  SEP V P+ FPNLL NG++GI+ G AT +P H
Sbjct: 125 RLSSIAAELLRDIDKQTVEFVSNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATELPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +IE+L+  I GPDFPTGG I++  + I ++Y  G+G   +R 
Sbjct: 185 HLGEVIDATIMRIDKPTCTIEELMTAIQGPDFPTGG-IIQGVDGIKKAYETGKGKIIIRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +  G   IV+TEIP++V K+ L++K+ EL + K++  + ++RDE+      ++ 
Sbjct: 244 KTEVESIRGGKQQIVITEIPFEVNKANLVKKMDELRLDKKVEGIAEVRDETDRTGLRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  ++  +D++  +  NM  ++  + P++M L  IL  ++ H+REV+  
Sbjct: 304 ELKKDANAQGVLHYLYKNTDLQVPYNFNMVAIAK-KRPKLMSLANILDAYIDHQREVVTN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS + +Q    R  I+ GL+ A   +DE+IA IR     +    +   ++  TE Q +AI
Sbjct: 363 RSKYELQKAREREHIVAGLIKALSILDEVIATIRASKDKRDAKNNLIAKYEFTEPQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E + L A+  +++ +L+S K+ +N I  E+R VK+ +S    
Sbjct: 423 VSLQLYRLTNTDITALQAEAEELGAKINELEEILHSEKKLFNVIKKELRRVKKQYSTE-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R +  E    +     + M+  E + V ++  G+++     S    +      K+ 
Sbjct: 481 ----RRSKIEAEIEEIKINLEVMVPSEEVMVTVTKDGYVKRTSLRSYAASNGQDFGMKDT 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D +      +TT+ +L+ +  G    +P   L   R       I  ++ ++  + IV A 
Sbjct: 537 DRILAKYEINTTETLLIFTNKGNYLYMPVHELPDIRWKDMGQHIMNIVPIDKEEQIVRAI 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               +     LL  +  G     E  +  A    K    + +  ++++  V +  G   V
Sbjct: 597 PVKEFKENQYLLFFTKNGMVKKSELLQYKAQRYSKALVAVNLKGDDEVVDVYQTDGKKQV 656

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT---WIDSAGR 717
            +   +   L F  ++I  +  R  GV+  + KD            +         +  R
Sbjct: 657 FIATRSGYGLRFREEEINIVGTRASGVKGINLKDDDYVVSGVIFDEDEALSTELFIATQR 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              +           R   G ++ +    +
Sbjct: 717 GAVKKTKITEFEESARAKRGLVMVRELKSN 746


>gi|332290089|ref|YP_004420941.1| DNA topoisomerase IV subunit A [Gallibacterium anatis UMN179]
 gi|330432985|gb|AEC18044.1| DNA topoisomerase IV subunit A [Gallibacterium anatis UMN179]
          Length = 731

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 267/722 (36%), Positives = 434/722 (60%), Gaps = 22/722 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDTAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++++EL+L  + +  VD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++  ++    EP   P++ P++L NGT+GIAVGMAT IP HN+ EI +A + L++NP+ S
Sbjct: 121 YQPNFDGTLDEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIAQALILLLENPDTS 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           ++++L+ +  PDFPT   I+  +E + + Y  G+G  ++RA W  E+       IV+T +
Sbjct: 181 MDEVLDIVKAPDFPTEAEIITPKEDLRKIYLNGKGSLKMRAVWSKEDGE-----IVITAL 235

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFM 331
           PYQ   +++IE+IA  +  K++P+++DI+DES  +   R+V+ P++  +D + LM  +F 
Sbjct: 236 PYQASGAKIIEQIAAQMRNKKLPMVDDIKDESDHENPTRLVIVPRSNRVDENELMAHLFA 295

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +D+E  + +NMN++ + R P V  L  IL EWL+ RR+ + RR  +R+  +  R+ IL 
Sbjct: 296 TTDLEKSYRVNMNMIGLDRKPAVKNLYTILTEWLSFRRQTVTRRLQYRLDKVLSRLHILD 355

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           GLLIA+LNIDE+I IIRNED+PK  ++SRF+L+E Q +AILNLRLR L KLEE ++++E 
Sbjct: 356 GLLIAFLNIDEVIHIIRNEDEPKQELMSRFALSEEQAEAILNLRLRHLAKLEETELRAEQ 415

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L  E+++++ +L+S K     I  EI +  + ++       R +   E   A KA  +
Sbjct: 416 KQLEQERKQLEKILSSDKNLNQLIKKEIEQDAKTYASP-----RLSKIVEREEA-KAISE 469

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
            A++  EP+TV++S  GW+R  K H +D  +L +K GD+    +   +  +++ L + G+
Sbjct: 470 SALVPVEPVTVILSEMGWVRCAKGHDIDPQSLSYKAGDNYLAHVCGRSNQQVIFLDSTGR 529

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +Y+L   +L S R  GE I   + L     I    +  +   LL+ S  G  F+    ++
Sbjct: 530 SYSLDPLSLPSARSQGEPITGKLTLPAGAMIEQLLMPKAEQALLMASDAGYGFVCNAEDL 589

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV--GENRKLLIFSIDQIPEMSRGKGVRL 689
           I   + GK  + +    K+   V +    V +V      K+L+F + ++P++S+GKG ++
Sbjct: 590 ITRNKAGKAAISLPENAKVLPPVVIENKSVLLVAITSANKMLLFPLSELPQLSKGKGNKI 649

Query: 690 QSY-----KDGGISDVICFKICEGLTWID-SAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +      K      V  F I EG + I  S  R       ++  + G+RG  G+ +P+G
Sbjct: 650 INIPAAKAKAREELLVRLFVIEEGSSLIFRSGKRKVTLDAKEISHYYGERGRRGASLPRG 709

Query: 744 FP 745
             
Sbjct: 710 VQ 711


>gi|304413715|ref|ZP_07395159.1| dimer of topoisomerase IV subunit A [Candidatus Regiella
           insecticola LSR1]
 gi|304283806|gb|EFL92200.1| dimer of topoisomerase IV subunit A [Candidatus Regiella
           insecticola LSR1]
          Length = 751

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 278/754 (36%), Positives = 431/754 (57%), Gaps = 27/754 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  + V++ +L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTHDVVESQALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ A+++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAQILLAELSQGTVDWIANFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNVQEI +A + LID P  S+++LLEY+ GPDFPT   I+  R  I + Y+ GRG  
Sbjct: 184 IPPHNVQEIAQALIQLIDKPNASLDELLEYVQGPDFPTDAEIITPRHEIKKIYQTGRGSI 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+RA W  EE       +V+T +P+QV  ++++E+IA  + +K++P++ED+RDES  +  
Sbjct: 244 RMRAIWNKEEAN-----VVITALPHQVSGAKVLEQIAGQMRSKKLPMIEDLRDESNHENP 298

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL +R
Sbjct: 299 TRLVIIPRSNRIDLDQVMSHLFATTDLEKSYRINMNMIGLDNRPSVKGLLTILSEWLVYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            + + RR ++R+  + RR+ IL+GLL A+LNID++I IIR ED  K V+++ FSL+E+Q 
Sbjct: 359 CDTVRRRLNYRLDNVQRRLHILEGLLTAFLNIDKVIDIIRTEDDAKSVLITCFSLSESQT 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +++SE      E  ++  LL S       +  EI+    +   
Sbjct: 419 EAILELKLRQLAKLEEKKLRSEEAEFQQELAQLQMLLESKAAFNQLLKKEIQADTAVCHH 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             +  RR           KA  +  +   EP+TVV+S  GW+RS K H VD S  ++K G
Sbjct: 479 QQNHCRRSPLI--QRDDAKAMNEHDIQPSEPVTVVLSKMGWVRSAKGHDVDPSGFNYKAG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D  + A    +    + + + G++Y+L    L S RG GE +      +    I    + 
Sbjct: 537 DCFRTAAQGKSNQPAVFIDSTGRSYSLDPLTLPSARGQGEPLTGRFISSTEAVIEYVLMA 596

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG-EN 667
           D+  +LL+ S  G  FI   S++I   R GK  + + S  K+   +K+ G    ++    
Sbjct: 597 DNDQQLLLSSDAGYGFICHFSDLITKNRAGKALMALPSNAKILPPLKLHGADDMLLSITA 656

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI-----------DSAG 716
            ++L+F    +P +++GKG ++ S               + L W+            S  
Sbjct: 657 GRILMFPAADLPRLTKGKGNKIISISKQER-----MAGSDNLRWLLRLSVQASVTFYSGK 711

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       +L  +  KRG  GSL+P+G  R  + 
Sbjct: 712 RKLTLKPEELKKFSAKRGSKGSLLPRGLTRIDRI 745


>gi|295704653|ref|YP_003597728.1| DNA topoisomerase IV subunit A [Bacillus megaterium DSM 319]
 gi|294802312|gb|ADF39378.1| DNA topoisomerase IV, subunit A [Bacillus megaterium DSM 319]
          Length = 808

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 214/750 (28%), Positives = 377/750 (50%), Gaps = 25/750 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   ERFLDLPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMHVDGNTAEKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D+  V+F   +++  SEP V P+ FPNLL NG++GI+ G AT +P H
Sbjct: 125 RLSSIAAELLRDIDKQTVEFVSNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATELPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +IE+L+  I GPDFPTGG I++  + I ++Y  G+G   +R 
Sbjct: 185 HLGEVIDATIMRIDKPTCTIEELMTAIQGPDFPTGG-IIQGVDGIKKAYETGKGKIIIRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +  G   IV+TEIP++V K+ L++K+ EL + K++  + ++RDE+      ++ 
Sbjct: 244 KTEVESIRGGKQQIVITEIPFEVNKANLVKKMDELRLDKKVEGIAEVRDETDRTGLRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  ++  +D++  +  NM  ++  + P++M L  IL  ++ H+REV+  
Sbjct: 304 ELKKDANAQGVLHYLYKNTDLQVPYNFNMVAIAK-KRPKLMSLANILDAYIDHQREVVTN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS + +Q    R  I+ GL+ A   +DE+IA IR     +    +   ++  TE Q +AI
Sbjct: 363 RSKYELQKAREREHIVAGLIKALSILDEVIATIRASKDKRDAKNNLIAKYEFTEPQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E + L A+  +++ +L+S K+ +N I  E+R VK+ +S    
Sbjct: 423 VSLQLYRLTNTDITALQAEAEELGAKINELEEILHSEKKLFNVIKKELRRVKKQYSTE-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R +  E    +     + M+  E + V ++  G+++     S    +      K+ 
Sbjct: 481 ----RRSKIEAEIEEIKINLEVMVPSEEVMVTVTKDGYVKRTSLRSYAASNGQDFGMKDT 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D +      +TT+ +L+ +  G    +P   L   R       I  ++ ++  + IV A 
Sbjct: 537 DRILAKYEINTTETLLIFTNKGNYLYMPVHELPDIRWKDMGQHIMNIVPIDKEEQIVRAI 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               +     LL  +  G     E  +  A    K    + +  ++++  V +  G   V
Sbjct: 597 PVKEFKENQYLLFFTKNGMVKKSELLQYKAQRYSKALVAVNLKGDDEVIDVYQTDGKKQV 656

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT---WIDSAGR 717
            +   +   L F  ++I  +  R  GV+  + KD            +         +  R
Sbjct: 657 FIATRSGYGLRFREEEINIVGTRASGVKGINLKDDDYVVSGVIFDEDEALSTELFIATQR 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              +           R   G ++ +    +
Sbjct: 717 GAVKKTKITEFEESARAKRGLVMVRELKSN 746


>gi|126732309|ref|ZP_01748109.1| DNA topoisomerase IV subunit A [Sagittula stellata E-37]
 gi|126707178|gb|EBA06244.1| DNA topoisomerase IV subunit A [Sagittula stellata E-37]
          Length = 809

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 324/809 (40%), Positives = 448/809 (55%), Gaps = 65/809 (8%)

Query: 6   ISNSNTLVEENVKAV--SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+ +     N + +   LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM  
Sbjct: 1   MSDDDLDPNMNARNLAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRR 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT ++E +L+G+DE++VDFR  Y+    EP V P+ +PNLLANG+SGI
Sbjct: 121 DNPAASRYTEARMTVMSEALLEGLDENSVDFRPNYDGRLEEPSVLPASYPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+  A L LI +P    + L++Y+ GPDFPTGG+IVE  E+I  +Y
Sbjct: 181 AVGMATNIPPHNIGELINACLHLIRSPNAVDDTLMQYVPGPDFPTGGVIVEPAENIATAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG  R+RARW VE++GRG W  VVTEIPYQVQKS+L+E+IAELI  K+IP+L D+RD
Sbjct: 241 RTGRGSIRLRARWHVEDLGRGQWQAVVTEIPYQVQKSKLVERIAELIQTKKIPVLADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+D+R+VL PK +++DPDLLM  +F  SD+E RF LNMNVL  G  P+V  L   L+ 
Sbjct: 301 ESADDIRMVLEPKTKNVDPDLLMNMLFRNSDLEIRFSLNMNVLIDGVTPKVCSLKECLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-----PKPVMV 418
           +L  RR+VL RRS  RM  ID R+E+L+GL+IA+LN+D +I IIR +D            
Sbjct: 361 FLDFRRDVLIRRSKHRMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMYEDWS 420

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--A 476
                T  +     + R   L  ++   ++   D    E+  +     S       +  +
Sbjct: 421 RPHQSTIPRATDERDYR-SPLTGVDVKALELRDDPDAVERGVLADDGTSSAVPRRFVGRS 479

Query: 477 CEIREVKEI-FSKSTDLGRRRTTFCEVSRADKATLQQ------------AMIEKEPITVV 523
             + +V+            RR    E+       +++                +    + 
Sbjct: 480 EGLSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASEDMQWGRIKEELN 539

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
              + + +  K      +     E + + +          ++ S  G    +     L  
Sbjct: 540 EVKKTFTKGYKRGQRLTTFAEATEAEDVPLEAMIEREPVTVVCSKMGWIRAMTGHIALDR 599

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL----------------------------- 614
               +       + H +      V+ S  +                              
Sbjct: 600 ELKFKDGDGPRFIFHAETTDKLLVFGSNGRFYTVLAANLPGGRGMGEPLRLMVDLPNDTE 659

Query: 615 -------------LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
                        LV SS G+ F+V E E+IA TR GK  L V    K  +   V+G+ V
Sbjct: 660 IVDILVHRPGQRLLVASSAGDGFLVPEDEVIAQTRAGKQVLNVKDPVKAMICKPVSGNAV 719

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           AVVGENRK+LIF +D++PEM RGKGVRLQ YKDGG+SDV  F +  GL+W+D AGR+   
Sbjct: 720 AVVGENRKVLIFMLDELPEMGRGKGVRLQKYKDGGLSDVRTFTLEAGLSWLDPAGRTRTV 779

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S ++L  W+ KR G G + P+GFPR  KF
Sbjct: 780 SSDELTEWVAKRAGSGRMAPRGFPRDNKF 808


>gi|325124180|gb|ADY83703.1| DNA topoisomerase IV, subunit A [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 739

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 273/745 (36%), Positives = 433/745 (58%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L  +  +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVIKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E+       IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIEK-----NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + E 
Sbjct: 357 IRKKTVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMDHFKIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRQEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+     + A     +Q ++  E +TVV+S  GWIR+ K   VD   L+++
Sbjct: 477 GDE-----RRSPIVARAEA-VQIREQDLMPAEAVTVVLSEAGWIRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  RI  L   G++Y LP  NL S RG GE +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRIYFLDETGRSYALPISNLPSARGLGEPLSSKLAPASGVAFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GK+FL V  + K   ++      H+AV+ 
Sbjct: 591 LDDEESELIAASSSGYGFKTQVKQLDTNAKAGKSFLSVPEKSKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +       +     + +  + +  +      +D
Sbjct: 651 SAGRLLIIDLSELPNLNKGKGNKLIQLEAKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  ++GKR   G L+P+G+ ++ K 
Sbjct: 711 LQKYMGKRASKGHLLPRGYQKANKL 735


>gi|169632198|ref|YP_001705934.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii SDF]
 gi|215484961|ref|YP_002327202.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260556418|ref|ZP_05828637.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii ATCC
           19606]
 gi|169150990|emb|CAO99616.1| DNA topoisomerase IV, subunit A [Acinetobacter baumannii]
 gi|213987958|gb|ACJ58257.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260410473|gb|EEX03772.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii ATCC
           19606]
          Length = 739

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 271/745 (36%), Positives = 433/745 (58%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E+       IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIEK-----NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+     + A     +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 GDE-----RRSPIVARAEA-VQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GKTFL V  + K   ++      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +       +     + +  + +  +      +D
Sbjct: 651 SAGRLLILDLAELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  ++GKR   G L+P+G+ ++ K 
Sbjct: 711 LQKYMGKRASKGQLLPRGYQKANKL 735


>gi|325926739|ref|ZP_08188048.1| DNA topoisomerase IV subunit A [Xanthomonas perforans 91-118]
 gi|325542875|gb|EGD14329.1| DNA topoisomerase IV subunit A [Xanthomonas perforans 91-118]
          Length = 747

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 272/755 (36%), Positives = 433/755 (57%), Gaps = 21/755 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRI++AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+D+P+ S+  L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +      +    IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATY-----KKEHANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA-----RRSPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + ++EGD L  A+ + +T ++  L +DG+AY+     L S RG+GE +            
Sbjct: 530 MSYREGDGLLAAVRSRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI----SDVICFKICEGLTWIDSA 715
            +  V     LL      +PE+ +GKG ++       +       +          + S 
Sbjct: 650 RIVAVTSAGNLLAVPATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+ + S  DL  ++G R   GSL+P+G+ +    
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGSLLPRGWQKVDGL 744


>gi|293610016|ref|ZP_06692317.1| DNA topoisomerase IV [Acinetobacter sp. SH024]
 gi|292827248|gb|EFF85612.1| DNA topoisomerase IV [Acinetobacter sp. SH024]
          Length = 739

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 272/745 (36%), Positives = 433/745 (58%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L  +  +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVIKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E+       IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIEK-----NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + E 
Sbjct: 357 IRKKTVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMDHFKIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRQEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+     + A     +Q ++  E +TVV+S  GWIR+ K   VD   L+++
Sbjct: 477 GDE-----RRSPIVARAEA-VQIREQDLMPAEAVTVVLSEAGWIRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  RI  L   G++Y LP  +L S RG GE +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRIYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVAFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GK+FL V  + K   ++      H+AV+ 
Sbjct: 591 LDDEESELIAASSSGYGFKTQVKQLDTNAKAGKSFLSVPEKSKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +       +     + +  + +  +      +D
Sbjct: 651 SAGRLLIIDLSELPNLNKGKGNKLIQLEAKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  ++GKR   G L+P+G+ ++ K 
Sbjct: 711 LQKYMGKRASKGHLLPRGYQKANKL 735


>gi|317403449|gb|EFV83960.1| topoisomerase IV subunit A [Achromobacter xylosoxidans C54]
          Length = 773

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 263/748 (35%), Positives = 406/748 (54%), Gaps = 41/748 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI+ AM  MGL  GA   KSAR+V
Sbjct: 22  ITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILFAMQAMGLAAGAKPVKSARVV 81

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI GQGNFG+ DGD+AAA RYTEAR+T +
Sbjct: 82  GDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTPI 141

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E+
Sbjct: 142 AKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPPHNLREV 201

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +ALI  P++   +L   I GPDF  GG I+     I + Y  GRG  +VRARW  E
Sbjct: 202 AQACVALIKQPQLPDAELFGMIPGPDFAGGGQIITPAADIAQIYAGGRGSLKVRARWQFE 261

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--------------- 304
           E+ RG W +VVTE+P      +++E+I E+   K     + +  E               
Sbjct: 262 EMARGQWQLVVTELPPGTSCQKVLEEIEEITNPKVKSGKKSLTPEQTQAKAVMLNLLDAV 321

Query: 305 -----SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
                    VR+V  PK   +D D  + ++   + ME+   +N+  +     P+   L  
Sbjct: 322 RDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSASVNLVCIGTDGRPRQKGLRD 381

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EWLA R   + RR+ FR+  +  R+ +L+G ++ YLN+DE+I  IR  D+P+  ++ 
Sbjct: 382 ILAEWLAFRTNTVLRRTRFRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDEPRAALME 441

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+L++ Q + IL +RLR L +LE ++I+ EL++   E+  +  LL++       +  EI
Sbjct: 442 RFNLSDRQAEDILEVRLRQLARLEGFKIEQELEDKRKEQVALQELLDNPNTLKRLLIKEI 501

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT      RA      +  +  EP+TV++S +GW+R+ + H  D
Sbjct: 502 EADAKQYGD-----DRRTLIETAERAVL----ETKVLDEPVTVIVSQKGWLRARQGHGHD 552

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            S   FK+GD L  A    TTD ++ +  +G+ Y++P   L S RG G+ +  +IDL   
Sbjct: 553 ASQFGFKQGDDLYGAFECRTTDTLIAMGDNGRVYSVPVAGLPSARGDGQPVTTMIDLESG 612

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             IV      +  + L+ +  G  F  + S++ +  R GK F+ + + +++   V +   
Sbjct: 613 TRIVHTIAAAADSRWLLATRGGYGFAAKLSDMTSRQRAGKQFITLEAGDELLRPVPLFEG 672

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              +A++ +  K L+F +D++  +   G+G  L         D        G   + +AG
Sbjct: 673 ATQLALLSQKGKFLVFGLDEVKSLSGGGRGTILMGLDGADKLDQTVPI---GALGLRAAG 729

Query: 717 RSYNRSEND------LLGWLGKRGGVGS 738
              N+   D      L  ++GKR   G 
Sbjct: 730 IYRNKHTEDILAGAALAVYVGKRARKGR 757


>gi|283779138|ref|YP_003369893.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068]
 gi|283437591|gb|ADB16033.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068]
          Length = 938

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 228/750 (30%), Positives = 352/750 (46%), Gaps = 44/750 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
                 +   L+E YL YA+S I  RA+PD+RDG KP  RRI+ AM+++ L  GA   K 
Sbjct: 24  RFLDQPIEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGAPRVKC 83

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+I G+  G  HPHG+  +Y +LVR+AQ +  R+ LI  QGNFG+I G   AA RYTEAR
Sbjct: 84  AKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRHILIDKQGNFGSIAGLPPAAMRYTEAR 143

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++ VA ++L+ ++ D VDF  TY+E + EP V P +FPNLL NG  GIAVGMATSIP HN
Sbjct: 144 LSPVASMMLEDLNLDTVDFVPTYDERNQEPTVLPCRFPNLLVNGAQGIAVGMATSIPPHN 203

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+CEA + +ID+PE+++ +L E I GPDFPTGG  +  R  I   YR GR    +RA+
Sbjct: 204 LGEVCEALVKVIDDPEVTLGELCEIIKGPDFPTGG-TICGRAGIRRGYRDGRSTIVLRAK 262

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV-LF 314
             +EE  +  + I++TEIPYQ  + R++EKIAEL+  +RI  +  I D S     +  + 
Sbjct: 263 TRIEEHKKDRYRIIITEIPYQQARDRVVEKIAELVNEERIKGISGITDLSDLKEPVHLVI 322

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  DP +++  ++  S ++    + +  L     P+ + L  +L+E+L HR  V+ R
Sbjct: 323 DIKRDADPYVVLNQLYQFSPLQDSISIILLALVD-GKPRELSLKELLEEFLRHRVTVIRR 381

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL----------- 423
           R+ F +    RR   ++GLL+A  NIDEII IIR         V    +           
Sbjct: 382 RTQFLLSKARRRKHTVEGLLLALANIDEIIRIIRASRTQAEAKVGLMGVECPAAMMQRAL 441

Query: 424 --------------------TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                               T  Q +AIL + L  L  LE+ ++  E   LL E  +   
Sbjct: 442 GEEGFAMFQSERGASDTYRLTAVQSEAILRMTLGQLVNLEQERLGGEHAELLKEIAEYLR 501

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITV 522
           +L         I  E+  +   +              +V+  D  T +  ++       +
Sbjct: 502 ILADENIIRAMIKEELIAIAAKYGDERRTEISGEEIGDVNLEDLITEETMVVSISHRGYI 561

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
             +     R+ +     L     ++ D +     A T   +L  +  G+ Y     +L  
Sbjct: 562 KRTPASTYRAQRRGGKGLKGAKTEDEDPIAHLFVASTHAYLLFFTNLGRVYWQKVYDLPE 621

Query: 583 --GRGHGEAIQLLIDLNHNQDI---VTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTR 636
                 G AI  L++L+  + I   +    +D     L++ + KG        +     +
Sbjct: 622 LSRESRGRAIVNLLNLSEGEKIAECIAIRDFDQQGHFLMMATRKGLVKKSPLEDYSRPKK 681

Query: 637 KGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            G   +K+  ++++  VV    GD V +       + FS      M R   GV+  S   
Sbjct: 682 GGIIAIKLREDDEVVDVVVTKPGDEVVLSTSTGMAIRFSESDARPMGRNTSGVKGISLAS 741

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           G     +     +  T +      Y +  N
Sbjct: 742 GDSLVGMVVADPD-ATLLTVCENGYGKRTN 770



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 24/149 (16%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
               ++ +S +G       S   A  R GK      +E++  +       H+ V   +  
Sbjct: 548 EETMVVSISHRGYIKRTPASTYRAQRRGGKGLKGAKTEDEDPIA------HLFVASTHAY 601

Query: 670 LLIF---------SIDQIPEMSR-GKG---VRLQSYKDGG-ISDVICFKI--CEGLTWID 713
           LL F          +  +PE+SR  +G   V L +  +G  I++ I  +    +G   + 
Sbjct: 602 LLFFTNLGRVYWQKVYDLPELSRESRGRAIVNLLNLSEGEKIAECIAIRDFDQQGHFLMM 661

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           +  +   +          K+G  G +  K
Sbjct: 662 ATRKGLVKKSPLEDYSRPKKG--GIIAIK 688



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 629 SEIIANTRKGKTFLKVSS---EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
           S      R GK    + +      +  V +V   + V ++    KL   +  +I  + R 
Sbjct: 828 SRYRTQRRGGKGLRDIKTTTRNGTVIAVARVDDTEEVLMMTARGKLQRIAAREIKTIGRN 887

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWID 713
            +GVR+ S  D      +     +     D
Sbjct: 888 TQGVRIMSLDDDDKLVAVVRVPRDEAEVTD 917



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
            ++     D T ++L+++++G    +   EI    R   G   + +  ++K+  VV+V  
Sbjct: 851 TVIAVARVDDTEEVLMMTARGKLQRIAAREIKTIGRNTQGVRIMSLDDDDKLVAVVRVPR 910

Query: 659 DH 660
           D 
Sbjct: 911 DE 912



 Score = 44.0 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 13/39 (33%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
           I E    +  + R Y +          +RGG G    K 
Sbjct: 546 ITEETMVVSISHRGYIKRTPASTYRAQRRGGKGLKGAKT 584


>gi|299116769|emb|CBN74882.1| DNA gyrase subunit A [Ectocarpus siliculosus]
          Length = 1031

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 222/760 (29%), Positives = 374/760 (49%), Gaps = 54/760 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++AM  + L+     +K
Sbjct: 163 DQVVNVGLEAEIKTSFMQYAMSIILGRALPDVRDGLKPVHRRILYAMYGLNLNPEGTHRK 222

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+GK HPHGD +VYD+LVR+AQ FV   PLI G GNFG+ID D AAA RYTE 
Sbjct: 223 CARVVGEVLGKYHPHGDTAVYDALVRMAQDFVMSAPLIQGHGNFGSIDNDPAAAMRYTEC 282

Query: 135 RMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +++ VA + +L  ++ D VD    ++  + EPVV PS+ P LL NG +GIAVGMAT+IP 
Sbjct: 283 KLSSVAKDTLLTDINLDTVDMMTNFDGNEKEPVVLPSRLPLLLINGATGIAVGMATNIPP 342

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A +ALI NP I  ++L   +  PDFPTGG I        + Y    GG  +R
Sbjct: 343 HNLGEVVAATIALIRNPGIPDDQLFRLLPAPDFPTGGRI-MGLAGARKLYTTSNGGVTLR 401

Query: 254 ARWCVE----EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           A   +E    +       +VVTE+PYQV KS L++++AE++  K++  + D+RDES  D 
Sbjct: 402 ATTHIEVIEAKGRTKRNAVVVTELPYQVNKSSLLQRMAEMVNDKKLEGISDLRDESDRDG 461

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGILKEWLAHR 368
             V+    R  +P ++  ++F  + ++T F  NM  L      P    L   ++ ++  R
Sbjct: 462 VRVVVELKRDANPQVVENNLFKKTQLQTSFSGNMLALGSDGTKPHRFSLRAAIQSFVDFR 521

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----MVSRFSLT 424
              + RR++F +  +  R  I++G+L A   ID +I ++R            M   + L+
Sbjct: 522 FTTVRRRTAFELGKVRAREHIVQGMLQALGMIDAVIELVRASTDTPMARDGLMAEPYGLS 581

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q DAIL LRL  L  +EE ++K+E ++L A  E+++ ++N   +  + I  E+ E K 
Sbjct: 582 QEQADAILALRLGRLTSMEEGKLKAEAEDLKAAMERLEGVMNEDSKVMDIIVEELTEAKN 641

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
             +       RRT        +    ++ ++  +   VV++  G+I+ +           
Sbjct: 642 KHAVP-----RRTMI---KPDEGELHEEDLLANDNSVVVVTAAGYIKRMPLEEFTAQNRG 693

Query: 545 FK---------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLL 593
            +         + D ++        D IL +S  G AY + A  +  G    +   +  +
Sbjct: 694 TRGKAGAKMSSDHDVVQHFFTCQDHDTILFVSDKGVAYGIRAFQVPVGSRTAKGVPVPQV 753

Query: 594 IDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + +  ++ I +    D       L++++ KG       +   + + +G   + +  ++ +
Sbjct: 754 LPIAGDEQIASVLAVDDFREDEYLVLLTQKGYIKRTPLAAFKSTSSRGLIIISLGEDDTL 813

Query: 651 KLVVKVTGDH-VAVVGENRKLLIF--SIDQIPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
           + V +   ++ + +  +      F  +   +    R  +GV+                  
Sbjct: 814 RWVKRCCDENGIVIGSKQGYATRFLANQKDLRPSGRTSRGVK-----------------E 856

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           EG + +    R Y +          +RGG G +  K   +
Sbjct: 857 EGHSLLVLTTRGYGKRVALNEFKTTRRGGKGVIALKLRQK 896



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 6/115 (5%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-----TGDHVAV 663
           +    LLV++++G    V  +E     R GK  + +   +K++  +         D + +
Sbjct: 856 EEGHSLLVLTTRGYGKRVALNEFKTTRRGGKGVIALKLRQKLEDTLACFRIVGADDEIML 915

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                 ++      I   SR   GV +Q          +            + GR
Sbjct: 916 STAQGTIVRQRAGAIARQSRTATGVIVQKLDANDGIKDVALVPEISEDAAAATGR 970


>gi|288556235|ref|YP_003428170.1| DNA topoisomerase IV subunit A [Bacillus pseudofirmus OF4]
 gi|288547395|gb|ADC51278.1| DNA topoisomerase IV subunit A [Bacillus pseudofirmus OF4]
          Length = 810

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 215/754 (28%), Positives = 384/754 (50%), Gaps = 24/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   + +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   ERYLDLPLEDVIGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYRDGNTADKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD+++R++Q +  R  L+   GN G+IDGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYDAMIRMSQEWKVRNLLVDMHGNNGSIDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L+ +D++ VD+   +++ + EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSKISAELLRDIDKETVDYIPNFDDSEDEPVVLPAMFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ EI +  +  ++ P+ ++E L+  I GPDFPTGG IV+  + I ++YR G+G   VRA
Sbjct: 185 HLSEIIDGVIMQMEKPQTTLEDLMTVIKGPDFPTGG-IVQGIDGIKQAYRTGKGKVIVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VEE+  G   I +TEIPY+V K+ L++K+ EL   K++  + ++RD++      ++ 
Sbjct: 244 KTEVEELRGGRQQITITEIPYEVVKANLVKKMDELRFDKKVDGIAEVRDDTDRTGLRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  +     V    + P++M L  +++ ++ H++EV  R
Sbjct: 304 ELKKEADAKAILHYLFKNTDLQVTYNF-NMVAIHNKTPKLMGLQPLIQAYIDHQKEVATR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ + ++    R  I+KGL+ A   +DE+IA IR+       K  ++  +  +E Q +AI
Sbjct: 363 RAQYDLKKAKDRQHIVKGLIKAISILDEVIATIRSSKDKKDAKENLIREYDFSEAQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L     +++++L S K+    I   ++ VK+ F+    
Sbjct: 423 VTLQLYRLTNTDITTLEEEAAELERRIHELEAILGSEKKLITVIKKGLQSVKKQFADP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  +    +       ++  E + V ++  G+++     S    +      KEG
Sbjct: 481 ----RRTVIKEEIEEIKINMDVLVASEDVMVTVTEEGYVKRTSIRSYTASNGEPPGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D L      +TTD +LL +  G    +P  +L   R       I  L+ ++ +  I+ A 
Sbjct: 537 DRLLDRFEMNTTDTLLLFTKLGSYLYVPVHHLPDIRWKDNGQHIANLVSVDRDDCILRAM 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               +  +  LL ++  G A   + S   A    K    LK+ +++++  V++  G   +
Sbjct: 597 PVKEFSESESLLFITKNGMAKRSQLSLYQAQRFSKPLMALKLKADDEVVSVMRTDGKKEL 656

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSY 719
            +       L F  ++I  +  R  GV+  + KD   + D   F+  + +       R  
Sbjct: 657 FIATHLGYGLWFDEEEISLVGQRAAGVKAINLKDDDKVVDAFTFEPEDKVDLFIVTHRGA 716

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLS 752
            +           R   G ++ +    +  + + 
Sbjct: 717 VKKMPLSEFDKSSRAKRGLVMLRELKSNAHRVIG 750


>gi|153819652|ref|ZP_01972319.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457]
 gi|126509811|gb|EAZ72405.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457]
          Length = 830

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 235/749 (31%), Positives = 355/749 (47%), Gaps = 72/749 (9%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP 
Sbjct: 61  VRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPP 120

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ GRG   +R
Sbjct: 121 HNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKTGRGKVYMR 179

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++
Sbjct: 180 SKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIV 239

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++ HRREV+ 
Sbjct: 240 IECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFVDHRREVVT 298

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------ 415
           RR+ F ++    R  IL+GL +A  NIDEII +IR    P                    
Sbjct: 299 RRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAM 358

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                              +   ++ LTE Q  AIL+LRL  L  LE  +I  E   LL 
Sbjct: 359 LERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLE 418

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E   +  +L S ++    I  E+  ++  FS +        T         A     +  
Sbjct: 419 EIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTL 478

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                V         + +      SA   KE D ++  L A+T D ILL ST GK Y + 
Sbjct: 479 SHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMK 538

Query: 577 AGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI 631
              L   S    G+ I  L+ L  N+ I        +     + + +  G        + 
Sbjct: 539 VYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQF 598

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------------- 677
                 G   L +  E+ +  V    G+  + +  +  K++ F   +             
Sbjct: 599 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 658

Query: 678 ------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
                       +  M R   GVR     DG     +     EG   +      Y +  +
Sbjct: 659 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTENGYGKRTS 717

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   RG  G +  K   R+G  + +
Sbjct: 718 LSEYPTKGRGTQGVVSIKVSERNGSVVGA 746


>gi|152980564|ref|YP_001352396.1| DNA topoisomerase IV subunit A [Janthinobacterium sp. Marseille]
 gi|151280641|gb|ABR89051.1| topoisomerase IV subunit A [Janthinobacterium sp. Marseille]
          Length = 771

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 284/766 (37%), Positives = 428/766 (55%), Gaps = 43/766 (5%)

Query: 6   ISNSNTLVE-----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +++   L +     +  +A++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ A
Sbjct: 1   MTDQANLFDQEAPADGGEALTLTTFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+GL+  A  +KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI GQGNFG+
Sbjct: 61  MNELGLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+T +++L+L  +D   VDF+  Y+    EP + PS+ P +L NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT IPSHN+ E+ +AA+ALI NP+++ E+L+  + GPDFP GG I+ S  +I 
Sbjct: 181 SGIAVGMATEIPSHNLHEVAKAAVALIRNPKLTHEELMAIVPGPDFPGGGQIITSPTAIS 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--------- 291
           + Y  GRG  +VRA W +E++ RG W  VVTE+P+     +++E+I EL           
Sbjct: 241 DIYSSGRGSVKVRATWKIEDMARGQWQAVVTELPHGTSSQKVLEEIEELTNPKIKLGKKS 300

Query: 292 ---------AKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                       + +L+ +RDES     VR+V  PK+++ D       +   + +ET   
Sbjct: 301 LSPEQLALKQTVLSMLDTVRDESGRDAPVRLVFEPKSKNQDQTEFTNLLLAHTSLETSVS 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +N+ ++     P+   L  IL+EW+  R   + RRS F++Q +D R+ IL+G     LNI
Sbjct: 361 INLVMIGGDGRPRQKSLGDILREWIEFRFTTITRRSQFKLQKVDDRIHILEGREAILLNI 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           D++I IIR  D+PKP ++  F L+E Q D IL +RLR L +LE  +I+ EL  L  EK  
Sbjct: 421 DKVIKIIRESDEPKPALMDAFRLSERQADDILEIRLRQLARLETIKIQQELAELRNEKTT 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL++       +  EI   ++ F  +     RRT      +A      +  +  EP+
Sbjct: 481 LQDLLDNPSSMKRLVIKEIEADEKQFGDA-----RRTLIEVAEKA----SVETKVIDEPV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVVIS +GW+R+   H  D +   FK GD+L       T D +L+  ++G+ Y++P   L
Sbjct: 532 TVVISQKGWVRARTGHGHDAAQFTFKAGDTLYNTFECRTVDSLLVFGSNGRIYSVPVSAL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              RG G  I  L++L     I+  F   +   LL+ S+ G  F  +  ++++ TR GK+
Sbjct: 592 PGARGDGVPITTLVELASGSRILHYFAGPADVTLLLASTAGYGFTAKSGDMVSRTRGGKS 651

Query: 641 FLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
           F+ +   ++      VT     +A + E  +LL+F ID+I  + + G+GV L   +    
Sbjct: 652 FITLDDGDEPLAPCPVTAGASAIACLSEKGRLLVFGIDEIKSLTAGGRGVILMDLEKNEK 711

Query: 698 SDVICFKICEGLTWIDSAGRSYN-----RSENDLLGWLGKRGGVGS 738
             +    I +    +  AGR         S + L   +GKR   G 
Sbjct: 712 L-LAAQAISQRGVIVSGAGRGGKAQEVLLSASGLAPHIGKRARKGK 756


>gi|21242194|ref|NP_641776.1| DNA topoisomerase IV subunit A [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21107613|gb|AAM36312.1| topoisomerase IV subunit A [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 747

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 270/755 (35%), Positives = 432/755 (57%), Gaps = 21/755 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRI++AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+D+P+ S+  L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +      +    I +  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATY-----KKEHANIFIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAEERAQIMAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA-----RRSPLVQRGAA-QAIDETEMVASEPMTVVLSQKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T ++  L +DG+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLAAVRSRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI----SDVICFKICEGLTWIDSA 715
            +  V     LL      +PE+ +GKG ++       +       +          + S 
Sbjct: 650 RIVAVTSAGNLLAVPATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+ + S  DL  ++G R   GSL+P+G+ +    
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGSLLPRGWQKVDGL 744


>gi|325913975|ref|ZP_08176331.1| DNA topoisomerase IV subunit A [Xanthomonas vesicatoria ATCC 35937]
 gi|325539744|gb|EGD11384.1| DNA topoisomerase IV subunit A [Xanthomonas vesicatoria ATCC 35937]
          Length = 747

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 272/755 (36%), Positives = 433/755 (57%), Gaps = 21/755 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRNIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +      +    IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATY-----KKEHANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA-----RRSPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GDSL  A+ + +T ++  L ++G+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDSLLAAVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPGSGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTAGSHVLSPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI----SDVICFKICEGLTWIDSA 715
            +  V     LL      +PE+ +GKG ++       +       +          + S 
Sbjct: 650 RIVAVTSAGNLLAVPATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+ + S  DL  ++G R   GSL+P+G+ +    
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGSLLPRGWQKVDGL 744


>gi|45644631|gb|AAS73019.1| predicted topoisomerase IV subunit A [uncultured marine gamma
           proteobacterium EBAC20E09]
          Length = 747

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 265/751 (35%), Positives = 444/751 (59%), Gaps = 29/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++   ++SL+   E+ YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD  + 
Sbjct: 1   MTKDKFDSISLKKYAEDSYLNYAMYVILDRALPNISDGLKPVQRRILYAMSELGLDASSK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+ D   S AA R
Sbjct: 61  YKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+++T  A L++  +    VD++  ++    EPV+FPSK P +L NGTSGIAVGMAT 
Sbjct: 121 YTESKLTSFANLLISELKSGTVDWQPNFDGSLLEPVIFPSKLPVILLNGTSGIAVGMATD 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IPSHN+ E+ +A + +++ P+  +  LL+ I GPDF     I+ + E + E Y  GRGGF
Sbjct: 181 IPSHNINEVIDATVKILEKPKSELNDLLKIIKGPDFSNAAPIIVNNEELQEMYSSGRGGF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           +++A+W      +    I++  +PYQ   S+++E+IAE ++ K++P++ D+ DE   +  
Sbjct: 241 KIQAQW-----KQEKNSIIINSLPYQASGSKILEQIAEQMLNKKLPMVVDLADEGDHEDP 295

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K+  ++ + LM  +F  +D++  + +NMN++S+   P+V PL  +LKEWLA R
Sbjct: 296 VRLVITLKSNRVNAEDLMNHLFASTDLQKSYRMNMNLISLKGGPKVFPLVDLLKEWLAFR 355

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           ++ + R+   R+  ++ R+ IL+GLL  +++IDE+I IIR  D+PK  ++  F L+E Q 
Sbjct: 356 KDTVKRKLEHRLDQVNDRLHILEGLLSIFIDIDEVIKIIRKSDEPKKDLIKAFKLSEIQA 415

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL ++LR L KLE+ +++ E +NL  E+ +I+ +L S  +    I  E+ E+KE+F +
Sbjct: 416 NAILEIKLRQLAKLEQIKLEDEKNNLDNEQNEIEKVLKSKARLKTLIKKELIEIKEMFGE 475

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 R++   E S A K   ++  +  EPITVV+S  GWIRS K H +D  +L ++  
Sbjct: 476 E-----RKSPIIESSNA-KVFSEEDTLVTEPITVVLSKAGWIRSAKGHDIDPHSLSYRGD 529

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+L+      +    + L ++GKAY++P+ +L S RG GE I   ++ +     +++ + 
Sbjct: 530 DNLQDFARGKSNQLAVFLDSNGKAYSIPSHSLPSARGMGEPITGRLNADSGVQFISSIIG 589

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGE 666
           +   K L++++ G  +I E   +  N + G+ F+K+    KM   + +  DH  +A V  
Sbjct: 590 EDNGKYLIMNTAGYGYISEFKNMTTNKKTGRAFMKLPEHAKMLKAIPIREDHSYIAAVSN 649

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRSYN 720
             KLLIF ++++P + +GKG ++ +     +S              E    I+   RS  
Sbjct: 650 IGKLLIFKLEELPILGKGKGNKIINIPKDKLSAGEEFMAHAQVLADESSLMIEVGKRSVT 709

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               D   ++  R   G        + GK +
Sbjct: 710 LKPKDWNEYILSRAKRGK-------KVGKLI 733


>gi|84623543|ref|YP_450915.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188577141|ref|YP_001914070.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84367483|dbj|BAE68641.1| topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188521593|gb|ACD59538.1| DNA topoisomerase IV, A subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 747

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 270/755 (35%), Positives = 431/755 (57%), Gaps = 21/755 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +      +    IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATY-----KKEHANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F+ +D+E  +  N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR   R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLTFRSDTVTRRLDHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA-----RRSPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T ++  L ++G+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLAAVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI----SDVICFKICEGLTWIDSA 715
            +  V     LL     ++PE+ +GKG ++       +       +          + S 
Sbjct: 650 RIVAVTSAGNLLAVPATEVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+ + S  DL  ++G R   G+L+P+G+ +    
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGALLPRGWQKVDGL 744


>gi|78047053|ref|YP_363228.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035483|emb|CAJ23128.1| topoisomerase IV subunit A [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 747

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 271/755 (35%), Positives = 434/755 (57%), Gaps = 21/755 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRI++AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+D+P+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDDPDATVAQLCEHVLGPDYPTTAEIITPAADLRNIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +      +    IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATY-----KKEHANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIIAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA-----RRSPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + ++EGD L  A+ + +T ++  L +DG+AY+     L S RG+GE +            
Sbjct: 530 MSYREGDGLLAAVRSRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI----SDVICFKICEGLTWIDSA 715
            +  V     LL      +PE+ +GKG ++       +       +          + S 
Sbjct: 650 RIVAVTSAGNLLAVPATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+ + S  DL  ++G R   GSL+P+G+ +    
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGSLLPRGWQKVDGL 744


>gi|293977753|ref|YP_003543183.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN]
 gi|292667684|gb|ADE35319.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN]
          Length = 816

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 218/770 (28%), Positives = 386/770 (50%), Gaps = 48/770 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E G      
Sbjct: 2   IENEKMISINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKH 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG V+GK HPHGD SVYD++VR+AQ +  RY LI GQGNFG+ID D  AA RY
Sbjct: 62  YKKSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++ +++E +L  ++++ VD +  +++   EP+V P+  PNLL NG+SGIAVGMAT++
Sbjct: 122 TEIKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA  + IDN  I+IE+L++YI  PDFPTGG I+   E + E++  GRG   
Sbjct: 182 PPHNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGG-IIYGYEGVKEAFLTGRGKIL 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R++   E++     CI++ EIPYQ++K+  I K  EL+   R+  L  IRDES  +   
Sbjct: 241 LRSKVHFEKIKF-RTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++F   ++++  LL+ ++F  + +ET F +N   L     P  + L  ++K ++ HR  V
Sbjct: 300 IVFFLKKNVNKQLLLNNLFKETYLETSFSVNNIALV-NGKPTKLNLKYLIKHFVNHRHNV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQV 428
           + RR+ + +     R  I++G  +   +++ +I +I++    +   +   +++ L+E QV
Sbjct: 359 IIRRTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNKYKLSEIQV 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +IL L+L SL KLE  +IK E   L  +      +LN    Q   I  E++ +KE +  
Sbjct: 419 QSILELKLNSLTKLESEKIKEEFIKLNKKIYSYKRILNDKFLQKKIIKKELKIIKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-------- 540
                 RRT        D   L+ ++   + + +  S  G+++    +   +        
Sbjct: 479 -----SRRTEI------DYLGLETSLEPNKQVVLTTSYDGYMKRTDLNEYKIKKIGVGGI 527

Query: 541 --SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
                +  + D +K  + A+T   +L  +  GK + L    +  G    +  AIQ LI +
Sbjct: 528 VNMGAYKLKKDFIKHIIVANTHQYMLFFTEKGKCFWLRVFEIPEGYKTSKGRAIQNLIKI 587

Query: 597 NHNQDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           +    I ++ +              +++++  G        +     + G   +K+   +
Sbjct: 588 DKKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQYSKPNKNGINAIKIKKGD 647

Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS----YKDGGISDVIC 702
            +       G   + +  ++ K + F    +  M+R   GV+  +         +  +IC
Sbjct: 648 ALIDAKLTNGKSEILIAVKSGKAIRFYESTVRPMTRITLGVKSITLSKLLSKDKVIGMIC 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +    +  +   + +  N                     ++G  ++
Sbjct: 708 INDPKKEYILVISENGFVKISNLSHYRKTD-----LKTINITSKTGCLVA 752



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/265 (9%), Positives = 72/265 (27%), Gaps = 19/265 (7%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +              +        +   I   I+          D       
Sbjct: 545 VANTHQYMLFFTEKGKCFWLRVFEIPEGYKTSKGRAIQNLIKI------DKKDKICSSIL 598

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
             +            ++  +   +  +          + ++   +   +        +  
Sbjct: 599 IKDFFNKYYINNHYVIMITKSGIIKKTTLEQYSKPNKNGINAIKIKKGDALIDAKLTNGK 658

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLV 616
           +   I + S     +       ++    G     L  L     ++     +      +LV
Sbjct: 659 SEILIAVKSGKAIRFYESTVRPMTRITLGVKSITLSKLLSKDKVIGMICINDPKKEYILV 718

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK--VTGDHVAVVGENRKLLIFS 674
           +S  G   I   S      +     + ++S+    + +K  V  D + ++ ++   L   
Sbjct: 719 ISENGFVKISNLSHY---RKTDLKTINITSKTGCLVAIKNVVNKDDIIIINQSGLTLRIP 775

Query: 675 IDQ----IPEMS--RGKGVRLQSYK 693
           + +    +      +GKG++L + K
Sbjct: 776 VTEIIVRVRATKGNKGKGIKLINLK 800


>gi|218437924|ref|YP_002376253.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7424]
 gi|218170652|gb|ACK69385.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7424]
          Length = 848

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 233/793 (29%), Positives = 395/793 (49%), Gaps = 54/793 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L    +   +L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   DLLATGQIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGMKPVHRRIVYAMHELGLTAD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  + +  +L  + E  VDF + ++    EPVV P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPIGQEAVLGNISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID P++  E+L E I GPDFPTGG I+   E I E+YR G+G
Sbjct: 186 TNIPPHNLGEIVDGLIALIDRPQLKDEQLWEIIPGPDFPTGGKII-DTEGIKEAYRTGKG 244

Query: 249 GFRVRARWCVEEVG------RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              V+    VE +       +    IVVTE+PYQV KS  IEK+A+L+   R+  + DIR
Sbjct: 245 IIPVQGVTHVETISLEGRRPKERTAIVVTELPYQVNKSGWIEKVADLVNQGRLEGIADIR 304

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R      ++E ++  + +++ F + +  L   + P  + L  +L+
Sbjct: 305 DESDRQGMRVVIELKREFKTKKVLEDLYKQTALQSNFGVILLALVDNK-PCQLSLRELLE 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           E+L  R + L R+    +     R+ +L+GLLIA  N+D++I I+RN             
Sbjct: 364 EFLNFREQTLTRQYRHELTQAQTRLHLLEGLLIALRNLDQVINILRNAPDGTTAKQKFQE 423

Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              ++E Q D+IL + +R L  LE+ ++++E ++L     ++  LLN   +    +  ++
Sbjct: 424 ELTISEEQADSILAMPMRRLTGLEQQKLQTEYEDLQQRINQLQVLLNDRIELMKSLKKDL 483

Query: 480 REVKEIFSKSTDLG-----------------------------RRRTTFCEVSRADKATL 510
           R +K  F                                      +++  +   +   +L
Sbjct: 484 RALKRKFGDERRTRIVSSAPTASKSEEKKGNPSTPPQPSKTTTPSKSSEPKAKDSSSLSL 543

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                  +   + I+ +G+I    +   +  +   K  D           D +++++  G
Sbjct: 544 FTPQPPPKDAVLTITEQGYIYWQSAAEFNSISSIKKGTDFPIYTQRIQQQDSLIVITDQG 603

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLN---HNQDIVTAFVYDSTCKL---LVVSSKGNAF 624
           KAY +    +        ++  L+  +   ++Q I + F++     L   ++++ +G   
Sbjct: 604 KAYPVSGSEIPPQESQPCSLLNLLPNSVQKNSQKIASYFLFPQQKNLSELILLTGQGRIK 663

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSI--DQIPEM 681
            +  SE+     +G + +K+  ++++  +   +  H VA+     ++L  +   +QIP M
Sbjct: 664 RLSMSELEQIGNRGLSLIKLKDDDRLGYLSLTSESHEVAIATNGGRVLRLTTRDEQIPLM 723

Query: 682 SR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            R  +G +    + G  I   +  KI + L  I  +   Y +        + K G +G++
Sbjct: 724 GRNAQGNQALRLRYGENIVGCVTPKIDDNLLLITQS--GYGKRIPVNSLRITKLGEIGTM 781

Query: 740 VPKGFPRSGKFLS 752
             +   ++     
Sbjct: 782 ALQFSSKTDNLAG 794



 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 17/164 (10%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTCKLL 615
              +  + + +  G+   L   +         A     + L + ++IV          LL
Sbjct: 695 TSESHEVAIATNGGRVLRLTTRDEQIPLMGRNAQGNQALRLRYGENIVGCVTPKIDDNLL 754

Query: 616 VVSSKGNAFIVEESEIIANTRKG-KTFLKV---SSEEKMKLVVKVT-GDHVAVVGENRKL 670
           +++  G    +  + +   T+ G    + +   S  + +  ++       V +V    + 
Sbjct: 755 LITQSGYGKRIPVNSL-RITKLGEIGTMALQFSSKTDNLAGMILAKPKKEVILVTNQERR 813

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           LI  ID +              KDG    V+  K  E +  + +
Sbjct: 814 LIIPIDSV----------GIWGKDGVGDQVVKLKPQESILLVVA 847


>gi|223998190|ref|XP_002288768.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira
           pseudonana CCMP1335]
 gi|220975876|gb|EED94204.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira
           pseudonana CCMP1335]
          Length = 820

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 214/750 (28%), Positives = 341/750 (45%), Gaps = 33/750 (4%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           + YALS I  RA+PD RDG KPVHRRI++AM+ +GL    +++K AR+VGEV+GK HPHG
Sbjct: 1   MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELILQGVDE 149
           D +VYD+LVRLAQPF    PLI G GNFG+ID D AAA RYTE R+T++ AE +L  +  
Sbjct: 61  DTAVYDALVRLAQPFSTNIPLIDGHGNFGSIDNDPAAAMRYTECRLTRIAAETLLDDILM 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D V+F   ++  + EP V P+K P LL NG +GIAVGMAT++P HN+ E+ +A +AL   
Sbjct: 121 DTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALTKG 180

Query: 210 PEISIEKLL-----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV--- 261
                E++      + I  PDFPTG  I+  +      Y  G GG  +RA   +EEV   
Sbjct: 181 RNEGGEEVTDGKLLQIIPAPDFPTGACII-GKSGSRSLYTTGNGGVVMRAVMHLEEVPTS 239

Query: 262 ----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
                     I+VTE+PYQV K+ L+E+IA L+  K++  + D+RDES  D   ++    
Sbjct: 240 SGKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDGIRMVIELK 299

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGILKEWLAHRREVLFRRS 376
           R     ++  ++   + ++T F  N   L  G   PQ   L   L  +L  R + +  + 
Sbjct: 300 RDAVAAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTIRNKC 359

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------KPVMVSRFSLTENQVD 429
           +F++  ++ R  I+ GLLIA  + DE+IAI+RN                 +  L+  Q D
Sbjct: 360 AFQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALMSTDNPKLGLSSAQAD 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           A+L L+L  L +L   ++  E   L   +  + +LL +     + +  E   +K+ F   
Sbjct: 420 AVLKLQLGQLTRLNGDKLNDEKKTLDESQTNLRNLLTNDAAVRDTMLEEFMAMKKRFGTP 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                      +         +  ++      +         S    +           D
Sbjct: 480 RKTKILPDEEDKADIDLVQNERSVIVVTRGGYIKRMPLKTFESQNRGTRGKRGTSNTISD 539

Query: 550 SL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
                     +  D +L+ +  G AY L A  +  G        I  ++ +  +  I + 
Sbjct: 540 DNAVAHCFTCNDHDTVLMTTQSGVAYGLRAYQVPEGGRTARGAPIPSVLPVKSDDVITSV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
                      +++ +  G       +     T++G     ++  +++    K T  D +
Sbjct: 600 LPVSEFSKNEFIVLATEYGWIKKTPLAAFEKLTQRGLIIATLADGDRLNWCEKCTDNDDI 659

Query: 662 AVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            V     +   F    +   +R  +GV+  + K G     +     E    +      Y 
Sbjct: 660 LVGSTRGQATRFKAADLRPTARTSRGVKSMTLKKGDTIADMNVLRKEDKFVLVVTTEGYG 719

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +           RGG G +  K   ++G+ 
Sbjct: 720 KRVLTEEFRTTARGGSGVIAIKF--KAGRV 747



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 61/187 (32%), Gaps = 11/187 (5%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K     L      +GD L         D IL+ ST G+A    A +L         ++ +
Sbjct: 630 KLTQRGLIIATLADGDRLNWCEKCTDNDDILVGSTRGQATRFKAADLRPTARTSRGVKSM 689

Query: 594 IDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE--- 647
             L     I    V       +LVV+++G    V   E     R   G   +K  +    
Sbjct: 690 -TLKKGDTIADMNVLRKEDKFVLVVTTEGYGKRVLTEEFRTTARGGSGVIAIKFKAGRVD 748

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQS--YKDGGISDVICF 703
           +++  +  V   D + ++     ++   +  I    R   GV +Q    + G     +  
Sbjct: 749 DRISTMRVVNEDDEILLITSQGVIVRQKVSDISCQGRAATGVLVQKVDVRSGDSISTVSI 808

Query: 704 KICEGLT 710
              E   
Sbjct: 809 VPKEDAD 815


>gi|238897995|ref|YP_002923675.1| DNA topoisomerase IV, subunit A [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465753|gb|ACQ67527.1| DNA topoisomerase IV, subunit A [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 745

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 273/756 (36%), Positives = 439/756 (58%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++      E+    ++L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MNQFTQPTED---YLALHTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNTAKFKKSARAVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L+ + E  VD++  ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLRELGEGTVDWQANFDGTLQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++EI  A + LID P+IS+++L+ ++ GPDFPT   I+  RE I + YR
Sbjct: 178 VGMATDIPPHNIKEIAYALIQLIDQPQISLKELMRWVQGPDFPTEAEIISPREEIEQIYR 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  EE        V+T +P+QV  ++++E+IA+ + AK++P+LED+RDE
Sbjct: 238 TGRGSIRMRAVWKKEEGNA-----VITALPHQVSGAKILEQIAQQMRAKKLPMLEDLRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+++ P++  +  + +M  +F  +D+E    +NMN++ + + P V  L  IL 
Sbjct: 293 SDHEHPTRLIIMPRHHGVHLEAVMNHLFATTDLEKSVRINMNMIGLDQRPLVKGLVSILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  L RR  F +  I +R+ +LKGLL+A+LNIDE+I IIR ED+ K  ++SRF 
Sbjct: 353 EWLTFRRATLRRRLLFNLDKILKRLHVLKGLLVAFLNIDEVIHIIRTEDEQKSFLISRFG 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q DAIL L+LR L KLEE  I++E D L  E   + SLL S K+  N I  +I++ 
Sbjct: 413 LSLIQADAILELKLRHLAKLEEINIRAEQDALEKESGTLQSLLASEKKLNNLIKKDIQDD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
             ++ +      RR+   + + + ++   +  +  EP+TV++S  GW R  K H +D   
Sbjct: 473 ACLYGQ-----NRRSPLVQRTASKESNENEV-LPSEPVTVILSKMGWARCAKGHEIDPVG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K+ D+        +    +LL + G+ Y L    L   R  GE +   +       +
Sbjct: 527 LNYKKSDAFYAMARGKSHQSFVLLDSTGRTYALDPMKLPHARHQGEPVMGKLTPPQGAVV 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDH 660
               + +     L+ S  G  FI   ++++A  R GK  + +    ++   + +T    +
Sbjct: 587 KALMMAEPEQSYLMASDAGYGFICTFADMVAKNRGGKILMTLPEGAQILPPLLITHANHY 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDS 714
           +  +    ++LIFS+  +P +S+GKG ++ S      + G    +  F +    +  + S
Sbjct: 647 LLSITALGRMLIFSMADLPTLSKGKGNKIISILSADWQAGLDRVIHLFMLPPNQSVTLYS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R  + +   L  +  +RG  G+L+P+GF R  K 
Sbjct: 707 GKRKLHLTHQHLQKFCSQRGKRGTLLPRGFQRIDKI 742


>gi|330817902|ref|YP_004361607.1| DNA topoisomerase IV, A subunit [Burkholderia gladioli BSR3]
 gi|327370295|gb|AEA61651.1| DNA topoisomerase IV, A subunit [Burkholderia gladioli BSR3]
          Length = 774

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 285/759 (37%), Positives = 420/759 (55%), Gaps = 38/759 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +      ++   ++L    E  YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL 
Sbjct: 10  DEPPSPPDDGNVLTLGDYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLG 69

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
             A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AA
Sbjct: 70  NNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAA 129

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T +A+L+L  +D+  VDF   Y+    EP + P++ P  L NG SGIAVG+
Sbjct: 130 AMRYTEARLTPIAQLLLDEIDQGTVDFMPNYDGSFEEPKLLPARLPFALLNGASGIAVGL 189

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IPSHN++E+  AA+ALI NP+++   L++ + GPDFP GG I+ S   I  +Y +GR
Sbjct: 190 ATEIPSHNLREVAAAAVALIRNPKLTHADLMQLVPGPDFPGGGQIISSDAEISAAYEVGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--- 304
           G  +VRARW +EE+ RG W +VV E+P      +++E+I EL   K     + +  E   
Sbjct: 250 GSLKVRARWKIEELARGQWQLVVNELPPNTSCQKVLEEIEELTNPKIKAGKKTLTQEQAN 309

Query: 305 -----------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
                                VR+V  PK+R+LD +  ++S+   + +E+  PLN+ ++ 
Sbjct: 310 TKKTLLDLLDAVRDESGKDAPVRLVFEPKSRALDQNEFVQSLLAHTSLESNAPLNLVMIG 369

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
               P    L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I II
Sbjct: 370 NDGRPAQKGLGAILGEWVGFRQLTVTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRII 429

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R  D+PK  ++S F L+E Q + IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +
Sbjct: 430 RESDEPKAALMSAFGLSERQAEDILEIRLRQLARLEKIKIEKELEELRAEKAKLEDLLAN 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                  +  EI      F        RRT   +  RA      +A +  EP+TVV+S +
Sbjct: 490 ESAMKRLLIKEIEGDARQFGD-----DRRTLIQQEKRATF----EARVIDEPVTVVVSQK 540

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           GW+R+LK H +D ++  FK GD L  A    T D ++   + G+ +++P   L  GRG G
Sbjct: 541 GWVRALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSKGRVHSVPVQVLPGGRGDG 600

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             +  LI+L     ++  F   +   LL+ SS G  FI +  ++I+  + GK F+ +   
Sbjct: 601 VPVTSLIELESGTHLMHYFAAGAEQPLLLASSNGFGFIAKVGDMISRQKTGKAFMTIDEG 660

Query: 648 EKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFK 704
                 + V      VA +    +LL+F +D++  +S  G+GV L +  +   + V    
Sbjct: 661 AVPLAPMPVMPLATQVACLSAQGRLLVFGLDEMKTLSAGGRGVILMAL-EDKEALVQALA 719

Query: 705 ICEGLTWIDSAGRSYNRSE-----NDLLGWLGKRGGVGS 738
           I      +   GR     E       L   +GKR   G 
Sbjct: 720 IDGRGVVLQGTGRGGKAQEVVLAGAALAPLVGKRARKGR 758


>gi|237746616|ref|ZP_04577096.1| topoisomerase IV subunit A [Oxalobacter formigenes HOxBLS]
 gi|229377967|gb|EEO28058.1| topoisomerase IV subunit A [Oxalobacter formigenes HOxBLS]
          Length = 772

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 284/758 (37%), Positives = 418/758 (55%), Gaps = 36/758 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +  +  EE  + + L    E  YL YA+S +K RA+PD+ DG KPV RRI++AM+E+ L 
Sbjct: 9   DQLSPAEEPRETLMLASFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILYAMNELRLA 68

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
             A  +KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI G GNFG+ DGD AA
Sbjct: 69  PDAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGSRDGDGAA 128

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T +A L+L+ + +  V+F+D Y+    EP   P++ P  L NG SGIAVG+
Sbjct: 129 AMRYTEARLTPIARLLLEEIGQGTVEFQDNYDGSTQEPKRLPARLPFTLLNGASGIAVGL 188

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IPSHN+ E+ EAA ALI NP+IS ++L+E + GPDFP GG I+ +  +I E YR GR
Sbjct: 189 ATEIPSHNLNEVAEAAKALIRNPKISHDELMEILPGPDFPGGGQIITAPHAISEIYRNGR 248

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--- 304
           G  +VRARW +EE+ RG W  VVTE+P      +++E+I E+   K     + +  E   
Sbjct: 249 GSLKVRARWKIEELARGQWQAVVTELPPGTSAQKVLEEIEEITNPKVRNGKKALSPEQIS 308

Query: 305 -----------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
                                VR+VL PK++ ++P   M+S+   + +E   P+N+ ++ 
Sbjct: 309 LRQQFLGMLDAVRDEASRDAPVRLVLEPKSKRINPGEFMQSLLAHTSLECNTPVNLVMIG 368

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
           +   P+   L  ILKEW+  R   +  R+S+R+  +D R+ IL+G     LNID +I II
Sbjct: 369 IDGRPRQKSLSDILKEWIEFRFVTVRHRTSWRLGRVDDRIHILEGRETVLLNIDRVIRII 428

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R  D+PK  ++  F L+E Q D IL +RLR L +LE+ +I+ EL  L  EKE +  LL++
Sbjct: 429 RESDEPKTALIETFRLSEKQADDILEIRLRQLARLEKIRIEQELAELRREKETLHDLLDN 488

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                  +  EI   ++ F        RRT   E  +A    + +  I  EP+TV++S  
Sbjct: 489 PASMKRLVIREIEADRKKFGD-----IRRTLIEEAEKA----VVEPKIADEPVTVIVSQN 539

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           GW+R    H + LS L FK GDSL  A    +TD +L  S+ G+ YT+    L  GRG G
Sbjct: 540 GWVRQRTGHGLTLSGLSFKSGDSLLAAYECRSTDLLLAFSSTGRIYTVAVHALPGGRGDG 599

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             I    +   ++ IV  F       +L+ +  G  F  + +++ +  R GK+F+ +  +
Sbjct: 600 MPITTFAETGIDETIVRYFAGSPDTTVLISTDSGYGFSAKVADMSSRVRNGKSFISLEKD 659

Query: 648 EKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPE-MSRGKGVRLQSYKDGGISDVICFK 704
           E +   V ++ D   +  +  N  LL+F + ++   +S G+GV L   + G         
Sbjct: 660 ETLLPPVAISPDDKWIGALSGNGHLLLFDMTELRALLSGGRGVILMGLEKGDKLMAARPV 719

Query: 705 ICEGLTWIDSAGRS--YNRSEN--DLLGWLGKRGGVGS 738
             +G T +  A     Y        +   LGKR   G 
Sbjct: 720 SEKGCTVVCQARNGNPYTVRIAGGAIEAHLGKRARKGK 757


>gi|152975973|ref|YP_001375490.1| DNA topoisomerase IV subunit A [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152024725|gb|ABS22495.1| DNA topoisomerase IV, A subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 807

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 213/751 (28%), Positives = 387/751 (51%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G      
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVNDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDIDKETVEFVPNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  I GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNCTVDDLLAIIKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVIELKKEANAEGILNYLYKNTDLQITYNFNMVAIN-NRRPTLMTLPNILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL+ A   +D++I  IR     +    +   +FS TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLMKALSILDQVIETIRASKDKRNAKDNLIAKFSFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   +++E + L  +   + ++LNS K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALENEAEELNQKITTLQAILNSEKKLLQVIKADLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R +  E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 E------RRSVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ ++
Sbjct: 533 KEGDVLLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETLI 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFVVFVTRNGMIKKTELNQYKVQRYSRAFVAINLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  +++  +  R  GV+  + K+            E   ++    
Sbjct: 653 TSDIVLATHGAYALIFDEEEVSPVGVRAAGVKAINLKEDDYVAAGKPLNSEKDQFMLVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|229824235|ref|ZP_04450304.1| hypothetical protein GCWU000282_01539 [Catonella morbi ATCC 51271]
 gi|229786589|gb|EEP22703.1| hypothetical protein GCWU000282_01539 [Catonella morbi ATCC 51271]
          Length = 819

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 205/755 (27%), Positives = 378/755 (50%), Gaps = 27/755 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E ++ +S    + +R+  Y+   I++RA+PD+RDG KPV RRI++AM          
Sbjct: 1   MSQEMIQELSFADVIGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYRDRNTADNP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG VIG  HPHGD SVY+++VR++Q +  R PLI   GN G++DGD AAA RY
Sbjct: 61  YRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLRNPLIDMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ + ++ VDF   +++ + EP V P++FPNLL NG +GI+ G AT I
Sbjct: 121 TEARLSPIAAQLLRDIKQETVDFILNFDDTEEEPTVLPARFPNLLVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +A + L+ +    +E+LL+ + GPDFPTG  I++  ++I ++Y+ G+G   
Sbjct: 181 PPHNLGEIIDAVIYLLTHKRPKLEELLDLVPGPDFPTGA-IIQGIDAIQQAYKTGQGKIT 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           + ++  +E +  G   IVVTE+PY+V KS+LI+++ E+ I +++  + D+RDES  +   
Sbjct: 240 LVSQTDIETLKGGKSQIVVTELPYEVNKSKLIQRLDEIRIQRKVEGIADVRDESDRNGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R +D   ++  +   +D++  +  NM  ++  R P+++ L  +L+ +++H++EV
Sbjct: 300 LVVELKRDVDAKGILTYLLKHTDLQVNYHFNMVAINK-RRPELVNLQTMLEAYISHQQEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           L RR+ + +    +R+ I+ GL+     +DE+IA IR  D  +    +    F  +  Q 
Sbjct: 359 LTRRTQYDLANDQKRLHIVDGLIRVVSILDEVIATIRRSDNKQEAKENLVAEFDFSMEQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E   L        ++L++ +     +  E++ +K+ F+ 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQERLELNERILMYQNILSNPEILNKVLINELKAIKKDFAT 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                  R +  +            +I  E + V ++  G+++     S    DL++L  
Sbjct: 479 P------RRSQIQAEVQSLEIDTHILIPDEQVMVSLTKEGYMKRTSMRSFASSDLNSLGL 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           ++ D         T   ++++++ G    +P   L   +       +     L   +  V
Sbjct: 533 RDFDYPIFVEELSTHQELVIITSKGNYIHIPVHELPEVKWKDLGVHLSQNYQLQDGERFV 592

Query: 604 TAFVYD-STCKLLVVSSKGNAFIVEESEIIA----NTRKGKTFLKVSSEEKMKLVVKVTG 658
            AFV      K+++ +  G       S         TR  K    +  ++++  V  +  
Sbjct: 593 NAFVASQEEHKVILATKAGMIKQTPLSAFTTYRSYKTRTAKAMNLLDDQDEVVAVECLKA 652

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGL--TWI 712
                V ++      L +S D + EM  + KGV     K+            E       
Sbjct: 653 GQNYEVVLLSRRSYCLRYSADLVSEMGLKAKGVTAIKLKEEDQVVACLVVNQEAKRPQLF 712

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               R   +  +  +     RG  G L+ K    +
Sbjct: 713 ALTQRGNVKRSDLTVIPELGRGSRGVLLLKELKTN 747



 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 41/333 (12%), Positives = 107/333 (32%), Gaps = 16/333 (4%)

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
             + + K  +   + +    ++ R   I   V+ L+      +  ++++  +  E   K 
Sbjct: 457 NPEILNKVLINELKAIKKDFATPRRSQIQAEVQSLEIDTHILIPDEQVMVSLTKEGYMKR 516

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             +  F+ ++     + +       +      +      L       + ++    +  ++
Sbjct: 517 TSMRSFASSDLNSLGLRDFDYPIFVE------ELSTHQELVIITSKGNYIHIPVHELPEV 570

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             +   V    +     G R       S+ +   +          T + +   +      
Sbjct: 571 KWKDLGVHLSQNYQLQDGERFVNAFVASQEEHKVILATKAGMIKQTPLSAFTTYRSYKTR 630

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
            +  ++ L  ++       L A     ++LLS         A +L+S  G        I 
Sbjct: 631 TAKAMNLLDDQDEVVAVECLKAGQNYEVVLLSRRSYCLRYSA-DLVSEMGLKAKGVTAIK 689

Query: 596 LNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EE 648
           L     +V   V +   K   L  ++ +GN    + + I    R  +  L +        
Sbjct: 690 LKEEDQVVACLVVNQEAKRPQLFALTQRGNVKRSDLTVIPELGRGSRGVLLLKELKTNPH 749

Query: 649 KMKLVVKVTG--DHVAVVGENRKLLIFSIDQIP 679
           ++  V+ +      V ++G+    ++F+  +IP
Sbjct: 750 QLLKVLALDKAQHQVCLLGDTGHSVVFAASEIP 782


>gi|88758894|emb|CAJ77831.1| DNA gyrase [Acinetobacter baumannii AYE]
          Length = 745

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 271/752 (36%), Positives = 435/752 (57%), Gaps = 18/752 (2%)

Query: 6   ISNSNTLV---EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + +  T+        +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMS
Sbjct: 1   MEDKLTMTSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMS 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D
Sbjct: 61  ELGLKSSGKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPD 120

Query: 123 G-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
              S AA RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+
Sbjct: 121 DPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTT 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++
Sbjct: 181 GIAVGMATDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLK 240

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
               GRG +R+RA + +E+       IV+TE+PYQV  S++I +IA+ + AK++PL+ D+
Sbjct: 241 IQTTGRGSYRMRAVYTIEK-----NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDV 295

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES  +   R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  
Sbjct: 296 RDESDHENPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRR 355

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ 
Sbjct: 356 ILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLME 415

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F++ E Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E+
Sbjct: 416 HFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISEL 475

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +E  + F        RR+     + A     +Q ++  E +TVV+S  GW+R+ K   VD
Sbjct: 476 KEDAKKFGDE-----RRSPIVARAEA-VQIKEQDLMPAETVTVVLSEAGWVRAAKGADVD 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
              L+++ GD         T  R+  L   G++Y LP  NL S RG G+ +   +     
Sbjct: 530 AENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASG 589

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
              +  ++ D   +L+  SS G  F  +  ++  N + GKTFL V  + K   ++     
Sbjct: 590 VSFIQVYLDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNM 649

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            H+AV+    +LLI  + ++P +++GKG +L   +       +     + +  + +  + 
Sbjct: 650 THLAVLSSAGRLLILDLAELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVVAGQQH 709

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                +DL  ++GKR   G L+P+G+ ++ K 
Sbjct: 710 LKLKGDDLQKYMGKRASKGQLLPRGYQKANKL 741


>gi|312143599|ref|YP_003995045.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904250|gb|ADQ14691.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
          Length = 793

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 244/753 (32%), Positives = 390/753 (51%), Gaps = 30/753 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  +++   +++ YL Y+LS I  RA+PD+RDG KPVHRRI++A  E+GL    A 
Sbjct: 1   MSEEIYPIAIEDKMKDAYLNYSLSVIVGRALPDVRDGLKPVHRRILYAARELGLLHNKAH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VGEV+GK HPHGD +VYD+LVR+AQ F QRY LI G GNFG+IDGDSAAA RYT
Sbjct: 61  KKSARLVGEVLGKFHPHGDSAVYDALVRMAQDFNQRYQLIDGHGNFGSIDGDSAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++T+VAE +L+ +DE+ V FRD ++    EP V PSK PNLL NG+SGIAVGM+TSIP
Sbjct: 121 ETKLTEVAESLLENIDEETVKFRDNFDGTLQEPEVLPSKIPNLLINGSSGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            HN+ E+ +A L L++ P   ++  +  ++ GPDFPTG  IV   E I  +Y  G+G   
Sbjct: 181 PHNLAEVIDAVLHLLEYPNARLDTIIKNHLPGPDFPTGASIV-GNEGIKSAYENGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E       I++TEIPYQ+ KS+LIE+IAEL+   ++  + D+RDES +D   
Sbjct: 240 LRAKSKI-EKEGRHKNIIITEIPYQLNKSKLIEEIAELVNKSKLTSVSDLRDESDKDGIR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +L       DP+L +  ++  + M++ F +N+  L   + P+VM L  IL  ++  R+EV
Sbjct: 299 ILIALKSGADPELTLNRLYKYTSMQSSFRINLLALD-NKKPKVMGLLEILNHFIEFRKEV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           +   + + +   + R  IL+GL IA   +D +I IIRN ++          + +++E Q 
Sbjct: 358 IKNHTKYNLNKSENRFHILEGLKIAINKLDLVIQIIRNSNEKSEAKAKLVEQLNISEVQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +IL ++L+ L  +E  ++++E   L A+ ++   +L   K     +  E++E+K+ F+ 
Sbjct: 418 QSILQMQLQRLVGMEIEKLEAEKTELAAKIKEYKKILTEEKTLKEYLKNELKEMKDKFAD 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                +RRTT  E         +Q +I+++   V +S RG I+  + +S     L   + 
Sbjct: 478 -----KRRTTIIE-DDEKAEINKQDLIKEKEAVVSLSYRGIIKRNEEYS----NLRAAKN 527

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D L   +   + D++L  S  G+ Y L    L    G      +   + L   ++I++  
Sbjct: 528 DYLISTVKGSSLDQLLFFSDHGEVYNLQVHELEEHHGLATGDNLSKYMQLPLEENIISLN 587

Query: 607 VY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
           +           + V+  G        E   N       +K+   +K+  V K    D +
Sbjct: 588 ILSKKNKQNNFYVFVTESGQIKRTAAKEYETNYSH-IRAIKL-DNDKLINVEKAEEKDQI 645

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            ++ +N   + F         R   G +                  +    +        
Sbjct: 646 MIISQNGYAIRFKGKSFSSTGRNTMGSKAIKLAKNDKVTAFSI-FNKNKYLVSVTETGRA 704

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    L KR G G  +     ++ K   +
Sbjct: 705 NKIKLSQFRLQKRNGRGQRIF--SNQNYKLAGA 735



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/322 (12%), Positives = 103/322 (31%), Gaps = 8/322 (2%)

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYL--NIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +E     +  +      + E+ +             I    + E   + ++  + ++   
Sbjct: 448 KEYKKILTEEKTLKEYLKNELKEMKDKFADKRRTTIIEDDEKAEINKQDLIKEKEAVVSL 507

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
               I+         L   +    +  +           +   + +N    E+ E   + 
Sbjct: 508 SYRGIIKRNEEY-SNLRAAKNDYLISTVKGSSLDQLLFFSDHGEVYNLQVHELEEHHGLA 566

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +        +    E   +     ++       + V  S +    + K +  + S +   
Sbjct: 567 TGDNLSKYMQLPLEENIISLNILSKKNKQNNFYVFVTESGQIKRTAAKEYETNYSHIRAI 626

Query: 547 --EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
             + D L     A   D+I+++S +G A      +  S   +       I L  N  +  
Sbjct: 627 KLDNDKLINVEKAEEKDQIMIISQNGYAIRFKGKSFSSTGRNTMGS-KAIKLAKNDKVTA 685

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK-TFLKVSSEEKMKLVVKVTGDH-VA 662
             +++    L+ V+  G A  ++ S+     R G+   +  +   K+        +  + 
Sbjct: 686 FSIFNKNKYLVSVTETGRANKIKLSQFRLQKRNGRGQRIFSNQNYKLAGAAFCEENEKIL 745

Query: 663 VVGENRKLLIFSIDQIPEMSRG 684
           +  +N ++    +D+IPE S G
Sbjct: 746 IAAKNGEMYTVEVDKIPETSPG 767


>gi|325924480|ref|ZP_08186000.1| DNA topoisomerase IV subunit A [Xanthomonas gardneri ATCC 19865]
 gi|325545042|gb|EGD16376.1| DNA topoisomerase IV subunit A [Xanthomonas gardneri ATCC 19865]
          Length = 747

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 270/755 (35%), Positives = 435/755 (57%), Gaps = 21/755 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPVADLRAIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +      +    IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATY-----KKEHANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++++F+
Sbjct: 356 EWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLMAKFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQILAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA-----RRSPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GDSL  A+ + +T ++  L ++G+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDSLLAAVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++  ++    +VT    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGAQVLTPAQVTNPQSD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI----SDVICFKICEGLTWIDSA 715
            +  V     LL  +   +PE+ +GKG ++       +       +          + S 
Sbjct: 650 RIVAVTSAGNLLAVAASDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+ + S  DL  ++G R   G+L+P+G+ +    
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGALLPRGWQKVDGL 744


>gi|85708690|ref|ZP_01039756.1| DNA gyrase subunit A [Erythrobacter sp. NAP1]
 gi|85690224|gb|EAQ30227.1| DNA gyrase subunit A [Erythrobacter sp. NAP1]
          Length = 933

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 241/844 (28%), Positives = 384/844 (45%), Gaps = 106/844 (12%)

Query: 6   ISNSNTLVE-------ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           +S+   +++       +    + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+
Sbjct: 1   MSDETDIIDPASPAPADGYDRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +A        G  + KSA+IVG+V+G  HPHGD ++YD+L RL QP+  R PL+ GQGNF
Sbjct: 61  YASKLGNFVAGRPYVKSAKIVGDVMGDFHPHGDGAIYDALARLTQPWSMRVPLVDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+ D D  A+ RYTEAR+ +V++ +L  +D+D VDF D Y+    EP V P++FPNLL N
Sbjct: 121 GSPDPDPPASMRYTEARLARVSDTLLDDLDKDTVDFVDNYDGRKQEPSVLPARFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GIAVGMAT++P HN+ E+ +  LA ++NP I+ E+L+EYI GPDFPT   ++     
Sbjct: 181 GAGGIAVGMATNVPPHNLGEVIDGCLAFMENPAITSEELIEYIPGPDFPTAP-LILGTSG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
              +Y  GRG   +R R  +E +      IV T IPYQV ++ L+EKIAE    KRI  +
Sbjct: 240 AKAAYTTGRGSILMRCRHEIEPLRGDRESIVFTSIPYQVGRAGLVEKIAEAAKDKRIEGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            DIRDES  D   ++    R    ++++  I+  +  ++ FP    +   G  P+ + L 
Sbjct: 300 SDIRDESNRDGTRIVIDLKRDATAEVVLNQIWRHTPAQSGFPA-NMLAIRGGRPETLMLR 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----- 413
             ++ +++ R EV+ RR+ F +     R  IL GL++A  N+DE++AIIR    P     
Sbjct: 359 DFIQAFISFREEVITRRTKFELNKARERAHILLGLVVAVSNLDEVVAIIRGAPNPATARE 418

Query: 414 -------------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV AIL+LRL  L  L   +I 
Sbjct: 419 RLLTKEWPIGDIAQYIRLVEAIEPSADQEGGTYRLSTRQVKAILDLRLHRLTALGRDEIG 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            EL  L  + E+  ++L    + +  +  E+ E++  ++             E++ A   
Sbjct: 479 DELKELAEKIEEFLAILADRVKLYEVMREELEEIRATYATPR--------ISEIAPAWDG 530

Query: 509 TLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTT 560
              + +IE++ + V ++  G+I+                 + +  K+ D++       T 
Sbjct: 531 LDDEDLIERDDMVVTVTLDGYIKRTPLSTFRAQNRGGKGRAGMSTKDEDAIAEMFVTSTH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID-LNHNQDIVTAFVYDSTCK---- 613
           + +L  ST GK Y L    L        G  I  L+  L+ ++ I T             
Sbjct: 591 NPVLFFSTAGKVYRLKVWKLPEGGPTTRGRPIINLLPALDTDETIRTVLPLPEDEDEWGA 650

Query: 614 --LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EEKMKLVVKV-TGDHVAVVGENR 668
             ++  ++KGN               GK  +K     E+++  V  V   D V +  ++ 
Sbjct: 651 LSVVFATAKGNVRRNSMDAFTNIPSNGKFAMKFDDESEDRLIGVRLVAPSDDVMLASKSG 710

Query: 669 KLLIFSIDQIPE-MSRG-KGVRLQSYKDGGISDVICFKICEGLT---------------- 710
           K + F+ + + E  SR   GVR     DG     +      G T                
Sbjct: 711 KAIRFAAEDVREFTSRTSTGVRGMKLADGDEVVSLSTLGATGTTPEEREQYIKFAPWKGE 770

Query: 711 ---------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                                 +      Y +  +        RGG G +      R+G 
Sbjct: 771 KEGDPDLTPERYDALKEKEQFILTVCANGYGKVSSSYEYRKTGRGGQGVVNIDNIDRNGS 830

Query: 750 FLSS 753
            ++S
Sbjct: 831 VVAS 834



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 57/150 (38%), Gaps = 7/150 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D ++ LST G   T P       +      +   D +   +   A   +    +L V + 
Sbjct: 740 DEVVSLSTLGATGTTPEEREQYIKFAPWKGEKEGDPDLTPERYDALK-EKEQFILTVCAN 798

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G   +    E     R G+  + + + ++    +   V  TG+ + +V +  KL+   ++
Sbjct: 799 GYGKVSSSYEYRKTGRGGQGVVNIDNIDRNGSVVASFVVQTGEQLMLVTDQAKLIRIGLE 858

Query: 677 QIPEMSR-GKGVRLQSY-KDGGISDVICFK 704
            +  M R   GVRL +  K+  +   +   
Sbjct: 859 SLRVMGRNTAGVRLFTVGKNEHVVSAVKID 888


>gi|302796304|ref|XP_002979914.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii]
 gi|300152141|gb|EFJ18784.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii]
          Length = 880

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 234/786 (29%), Positives = 376/786 (47%), Gaps = 64/786 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            +    V L     E YL+YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL      +
Sbjct: 19  NDRTLLVELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPHR 78

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-----------PFVQRYPLISGQGNFGNID 122
           K AR+VGEV+GK HPHGD +VYD+LVRLAQ            F  R PLISG GNFG++D
Sbjct: 79  KCARVVGEVLGKFHPHGDTAVYDALVRLAQASYTLFSSSFISFSLRSPLISGHGNFGSLD 138

Query: 123 GDSAAAYRYTEARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           GD AAA RYTE R+  ++E + L  +D D VDF   ++    EPVV P++ PN+L NG S
Sbjct: 139 GDPAAAMRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGAS 198

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A  ALI NP  ++E+L+E++ GPDFPTGG I+     I +
Sbjct: 199 GIAVGMATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQIL-GISGIAD 257

Query: 242 SYRLGRGGFRVRARWCVEEV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           ++R GRG   VR +   EE+        IV+TEIPY   KS L+ KIAEL+ +K +  + 
Sbjct: 258 AFRTGRGTITVRGKADFEELEGKISRSAIVITEIPYGTNKSTLVAKIAELVNSKMLEGVS 317

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES      ++    R     +++ +++  + +++RF  N+ V  + + P+V  +  
Sbjct: 318 DIRDESDRAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNL-VGILNKEPEVFSIKR 376

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID---EIIAIIRNEDKPKPV 416
           +L+ +L  R  V+ RR+   +   + R  +L+G L     +D   +++   ++       
Sbjct: 377 LLEIFLDFRCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQA 436

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +   F L+  Q +A+L + LR +  LE  +I  E ++LLA+   +  LL++ ++    + 
Sbjct: 437 LQKDFGLSAAQAEALLGMPLRRITSLERNKILEEHNSLLAQASDLRELLSNKQRVLKVVE 496

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E   +K  F        RRT   E        +   +I      + +S +G+I+ ++  
Sbjct: 497 KEALALKNEFGSP-----RRTVLEEYGDGRIDNID--VIPNNESFLTLSEKGYIKRMQPD 549

Query: 537 SV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +           S    K  D +  +      D +L+ S  G  Y+  A  +        
Sbjct: 550 TFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERGVVYSFRAYQVPECSRTST 609

Query: 589 --AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              I  ++ +   + I + F    +     L++++SKG     E     +   +G   ++
Sbjct: 610 GVPIIQVLSIPAGERITSIFPLSEFREDHFLVMLTSKGYIKRTELPAFSSIRPQGIVAIQ 669

Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
           +   +++K V   T  D + +   N   +     +   M RG +G+R    K+G     I
Sbjct: 670 LMEGDELKWVRLATQSDRIFIGSRNGMAMQAPC-EFRSMRRGARGLRAMRIKEGDEIAAI 728

Query: 702 CFKI----------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                                      E    +  +     +              VG +
Sbjct: 729 DIVPGSVWKESPTLLCTHVLCNRSKASEAPWLLFVSENGMAKRVPITSFPRHGLNKVGVI 788

Query: 740 VPKGFP 745
             K  P
Sbjct: 789 GCKFVP 794



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 12/107 (11%)

Query: 614 LLVVSSKGNAFIVEESEIIAN--TRKGKTFLKVSSEEKMKLVVKV--------TGDHVAV 663
           LL VS  G A  V  +    +   + G    K    +++  +  V        + + + V
Sbjct: 760 LLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGDRLASMFVVGTSVSDGESNEEIVV 819

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEG 708
             +      F + +I   SR G+G++L     D  +  V      + 
Sbjct: 820 GTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDKVKSVSVVAASDS 866


>gi|289548053|ref|YP_003473041.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484]
 gi|289181670|gb|ADC88914.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484]
          Length = 764

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 241/730 (33%), Positives = 390/730 (53%), Gaps = 43/730 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  V +   + + Y+ YA+S I  RAIPD+RDG KPV RRI++AM +MGL     F KS
Sbjct: 2   DIIEVPIEEEVRQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYDMGLFPEKPFVKS 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG V+G  HPHGDQ+VYD+LVR+AQ F   YPLI GQGNFG++DGD  AA RYTEA+
Sbjct: 62  ARIVGTVLGYYHPHGDQAVYDALVRMAQDFNMNYPLIVGQGNFGSVDGDPPAAMRYTEAK 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++ A L+L+ +D++ VDF   ++    EP V PSKFPNLL NGT+GIAVG+ATSIP HN
Sbjct: 122 LSRYALLLLEDIDKETVDFVPNFDGSTREPAVLPSKFPNLLCNGTAGIAVGLATSIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C+A + L  NP ++ ++++  I GPDFPTGGI+  + + ++E Y  GRG  R+RA+
Sbjct: 182 LSEVCKAVIELAKNPHMTTQEIMRIIKGPDFPTGGIVE-NYQELLEFYEKGRGQVRIRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE+V  G   IVVTEIPYQV K+ LI++IAEL+   R+  + DIRDES ++   ++  
Sbjct: 241 AHVEKVAGGREQIVVTEIPYQVNKAELIKRIAELVRDGRLKEISDIRDESDKEGIRIVIE 300

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    + ++E ++ L+ +   FP+N  VL     P+ + +  +L+E++ HR EV+ RR
Sbjct: 301 LKRDASGEKVLEKLYKLTALRKNFPINFVVLID-GEPRQVGIKTLLQEFIRHRLEVILRR 359

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAIL 432
           S + ++  + R+ +++GLL A  N+D +IA IR+ +        +  ++ LT  Q +A+L
Sbjct: 360 SRYLLRKAEERLHLVEGLLKALANLDGVIADIRSSEDVHQAREKLTKKYGLTPLQAEAVL 419

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +++ E   L  + E    ++ S  ++   +  E+ E+         L
Sbjct: 420 DMRLQRLTSLERNKLEEEERGLRQKVEYYRRVIGSEDERVRILIEEMEELI------RTL 473

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
              R TF E          +   +   ITVVI   G I  + S    +            
Sbjct: 474 PSVRRTFVEGL--------EGEDKTGSITVVIYQNGRILPVTSMEEGVVVN--------- 516

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDST 611
             L     D + L+S+ G+ Y +     L G                + +V AFV   ++
Sbjct: 517 -ILEVPYDDGLFLVSSKGRVYWIGGSQALQGSRIDLK-------EQGEYVVGAFVRSQAS 568

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKL 670
            +L++ ++ G    +   +      +G   +K++  +++  +++   +  + +     ++
Sbjct: 569 DRLVLATAMGYIKKIPLVDFE-YRAQGMPIIKLAEGDEIVRLLQSPEEGDLLLYTHRGRV 627

Query: 671 LIFSIDQIPEMSRG-KGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           L F +  +P    G KGV     +D   +  V      +    +        +  +    
Sbjct: 628 LRFPVKDVPPAGVGSKGVVGIKLEDKDRVVGVKAILGAK--YILVITEDGKVKKVSSQEI 685

Query: 729 WLGKRGGVGS 738
            +  RG  G 
Sbjct: 686 PVRSRGSKGI 695



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 12/154 (7%)

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-EEKMKL--VVKVTG 658
           +V          L +VSSKG  + +  S+ +  +R     + +    E +    V     
Sbjct: 514 VVNILEVPYDDGLFLVSSKGRVYWIGGSQALQGSR-----IDLKEQGEYVVGAFVRSQAS 568

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           D + +      +    +    E  R +G+ +    +G     +     EG   +    R 
Sbjct: 569 DRLVLATAMGYIKKIPLVDF-EY-RAQGMPIIKLAEGDEIVRLLQSPEEGDLLLY-THRG 625

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                          G  G +  K   +  + + 
Sbjct: 626 RVLRFPVKDVPPAGVGSKGVVGIKLEDK-DRVVG 658


>gi|228992294|ref|ZP_04152225.1| DNA topoisomerase 4 subunit A [Bacillus pseudomycoides DSM 12442]
 gi|228767319|gb|EEM15951.1| DNA topoisomerase 4 subunit A [Bacillus pseudomycoides DSM 12442]
          Length = 806

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 213/751 (28%), Positives = 385/751 (51%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G      
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDIDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  S++ LL  I GPDFPTGG I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSSVDDLLTVIKGPDFPTGG-IIQGLDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQVPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I+ GL+ A   +DE+I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSEYELRKAENRQHIVAGLMKALSILDEVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E + L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEKEAEELEKKITELQAILQSEKKLLQVIKADLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
           +      R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 N------RRAVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ ++
Sbjct: 533 KEGDILLERFDTNTTEIVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETLI 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF+ +++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATHGAYALIFNEEEVSPVGVRAAGVKGINLKEDDYVASGRALNSEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|58581619|ref|YP_200635.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426213|gb|AAW75250.1| topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 747

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 269/755 (35%), Positives = 429/755 (56%), Gaps = 21/755 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +      +    IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATY-----KKEHANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F+ +D+E  +  N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR   R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLTFRSDTVTRRLDHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +      A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA------RLSPLVQRGAAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T ++  L ++G+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLAAVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI----SDVICFKICEGLTWIDSA 715
            +  V     LL     ++PE+ +GKG ++       +       +          + S 
Sbjct: 650 RIVAVTSAGNLLAVPATEVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+ + S  DL  ++G R   G+L+P+G+ +    
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGALLPRGWQKVDGL 744


>gi|309800102|ref|ZP_07694295.1| DNA topoisomerase IV, A subunit [Streptococcus infantis SK1302]
 gi|308116269|gb|EFO53752.1| DNA topoisomerase IV, A subunit [Streptococcus infantis SK1302]
          Length = 825

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 210/748 (28%), Positives = 381/748 (50%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI E+ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIHVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R +  E +         ++I +E   V ++  G+I+     S   S L        
Sbjct: 478 ----RLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 552 K---IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
                     TT  +L+ +T G     P   L   R           + +   N++++  
Sbjct: 534 DRLLFVQSVKTTQHLLIFTTLGNVIYRPVHELADIRWKDIGEHLSQTITNFETNEEVIYV 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D        +  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 594 EVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++  N   L F+I+++P +  +  GV+  + K   +              +    R
Sbjct: 654 DDVLLISRNGYALRFNIEEVPVIGAKAAGVKAMNLKADDVIQAAFICNTSSFYLLTH--R 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIEEIPATSRANRGLQVLRELK 739


>gi|322388037|ref|ZP_08061643.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus infantis
           ATCC 700779]
 gi|321141058|gb|EFX36557.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus infantis
           ATCC 700779]
          Length = 825

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 208/748 (27%), Positives = 376/748 (50%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI E+ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK  F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLTAIIGDERTMYNLMKKELRDVKRQFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R +  E +         ++I +E   V ++  G+I+     S   S L        
Sbjct: 478 ----RLSSLEDTAEVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFSASTLEEIGKRDD 533

Query: 552 K---IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
                     TT  +L+ +T G     P   L   R       L   + + +        
Sbjct: 534 DRLLFIQSVKTTQHLLIFTTLGNVIYRPVHELADIRWKDIGEHLSQTITNFETNEEVLYV 593

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
                +D        +  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 594 EVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYRSKSVKYAKLKDDSDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++ +N   L F+I+++P +  +  GV+  + K                  +    R
Sbjct: 654 DDVLLISKNGYALRFNIEEVPVVGAKAAGVKAMNLKADDELQAAFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSTEEIPATSRAKRGLQVLRELK 739


>gi|134288295|ref|YP_001110458.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
 gi|134132945|gb|ABO59655.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
          Length = 808

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 264/742 (35%), Positives = 402/742 (54%), Gaps = 27/742 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +    E  YL YA+S ++ R +PD+ DG KPV RR+++AM++MGL   A   KSAR+V
Sbjct: 57  IPIGGWAERAYLDYAMSVVRGRTLPDVEDGQKPVQRRLLYAMNDMGLTATAKPVKSARVV 116

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T  
Sbjct: 117 GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPF 176

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +D+  VDF+  Y+    EP + P++ P LL NG SGIAVGMAT IPSHN++E+
Sbjct: 177 ADLLLAEIDQGTVDFQPNYDGAFEEPSLLPARLPVLLLNGASGIAVGMATDIPSHNLREV 236

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   LI  P+ +   ++  + GPD+P G  I+     I + Y  GRG  RVRARW +E
Sbjct: 237 ADACSLLIRRPDATFGDVMSVLPGPDYPGGAQIISDIADIHKVYEGGRGSLRVRARWSLE 296

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDI 301
           ++ RG W I VTE+P+ V   +++E+I EL   K                      L+ +
Sbjct: 297 QLARGQWQIAVTELPHGVSTQKVLEEIEELTNPKIKAGKKALTQEQGNMKALLLSVLDSV 356

Query: 302 RDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RD+S     VRIV  P +    P+ LM  +   + +E    +N+  + +   PQ   +  
Sbjct: 357 RDDSDEKHPVRIVFEPHSSRQTPEQLMNVLLAHTSLECNASVNLVTIGLDGRPQQKGIVP 416

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            L EW+  R   + RR+  R+  ++RR+ IL G +IA+LNID++I +IR  D+PK  +++
Sbjct: 417 ALTEWVEFRYRTVTRRTEHRLAEVERRIHILDGRMIAFLNIDQVIKVIRESDEPKRDLIA 476

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L+E Q + IL +RLR L +LE  +I+ EL  L  E+  + SLL       NQI  EI
Sbjct: 477 TFHLSEVQAEDILEIRLRQLARLEGIKIEKELAQLQDEQRHLQSLLADRAAMTNQILKEI 536

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
              K+ F        RRT      +     +       +P+T+++S  GW+R+   H +D
Sbjct: 537 EADKQKFGD-----DRRTLIESAEKVTSGAVV--PTADDPVTIIVSRSGWLRARSGHGID 589

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           +S L FK GD L  ++   T+  + +  T+G+ Y + +  + +GRG G  +  LI+L   
Sbjct: 590 ISTLTFKAGDDLLASIETRTSTSLAVFDTNGRCYNVASALIPTGRGDGVPLTSLIELQGG 649

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             +    V D T   L+ SS G  ++   ++++   + GK F  +   E M    K+ GD
Sbjct: 650 GRLTHVIVIDQTANYLIASSGGYGYVCAGADLLTRQKAGKAFATLEPGEVMHPPAKIAGD 709

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            V+ V    +L++F + ++  M +GKGV+L   +       +            ++G+  
Sbjct: 710 TVSAVCSGGRLVLFPLSEVKVMPKGKGVKLMELEARETLVAVAIGDGASCIVSTTSGKPI 769

Query: 720 NRSENDLLGWLGKRGGVGSLVP 741
             +   L  +   R   G  +P
Sbjct: 770 ALTGTALDKYRLHRARKGCQLP 791


>gi|225849212|ref|YP_002729376.1| DNA gyrase subunit alpha [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643258|gb|ACN98308.1| DNA gyrase, A subunit [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 795

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 241/745 (32%), Positives = 401/745 (53%), Gaps = 23/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++K V +   ++  Y+ YA+S I  RAIPD+RDG KPV RRI+ AM E+GL     +KK
Sbjct: 2   EDIKKVPIEEEIKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILFAMYELGLLPNKPYKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGE +GK HPHGD SVYD+LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTEA
Sbjct: 62  SARVVGETLGKFHPHGDTSVYDALVRMAQDFTMRYPLIDGQGNFGSIDGDPQAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A  +L+ +D++ VD    ++    EP V PSKFPNL+ NGTSGIAVG+ATSIP H
Sbjct: 122 RLTKLAVEMLEDIDKNTVDMVPNFDSSLEEPTVLPSKFPNLICNGTSGIAVGLATSIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ EA   L   P+ ++E+L ++I GPDFPTGGII  S E I++ Y+  RG   ++ 
Sbjct: 182 NFTEVAEALKYLAQFPDATVEELCQFIKGPDFPTGGIITNSHEEIIDIYKTARGSITIKG 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++      +V+ EIPYQV K  LI++IAEL+   +   + D+RDES      ++ 
Sbjct: 242 KARIEKLPGNRQRVVIYEIPYQVNKVELIKRIAELVRTGKEKGISDLRDESDRTGIRIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  DP+ +++ ++  + +E  FP+N  VL   + P+V+ L  IL+E++ HR EV+ R
Sbjct: 302 ELKRDADPEKVLKKLYKSTPLEKSFPVNFTVLVD-KQPKVLSLKEILQEFIKHRLEVITR 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++  + R+ I++GL++A  N D++I I+R+       + ++ +R++LTE Q +AI
Sbjct: 361 RTLFDLEKAENRLHIVEGLIVALENADKVIDIVRSSKDTSQARELLTTRYNLTETQANAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL     LE  ++K E   L A+ E    +L++ +++      E+ E+   +S    
Sbjct: 421 LDMRLARFTALETTKLKEEKKELEAQIENYKKILSTEEEKIKVFIQEMDEMLSKYSDE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS-VDLSALHFKEGDS 550
             R+ T   E     K     A++    +     +    +S      ++  +L+  EG  
Sbjct: 479 --RKTTIAVEKELTFKEYFMFAIMSSGKVYNHKVDENTDKSEILQKIINDISLNSVEGKK 536

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD- 609
           +       ++  +   + +GKA      +L  G G  +          ++ + T +  + 
Sbjct: 537 IVSIQEVESSKPVAFFTKEGKADWSLVIDLPKGEGKLKI--------DSEIVGTIYQGEG 588

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-KLVVKVTGDHVAVVGENR 668
              ++ +++ KG    + + +I   + K  T + ++  +++   +      ++ +  +N 
Sbjct: 589 EENRVFLITKKGIIKRMFDEDIFYKSHK-HTVMPLNEGDELAVAIADQNPSYIGIYTKNA 647

Query: 669 KLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            LL+F  +++     + KGV               F I      + +  + Y +      
Sbjct: 648 DLLLFERNEVRVTGDKAKGVEGIDLDPNDEV-AGSFLIDGHNYILIATSKGYMKLVEKSE 706

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
             + KRG  G +  K   +    +S
Sbjct: 707 FPIKKRGQKGLMAVK-LNKDDYVVS 730



 Score = 68.3 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK 651
           IDL+ N ++  +F+ D    +L+ +SKG   +VE+SE     R  KG   +K++ ++ + 
Sbjct: 670 IDLDPNDEVAGSFLIDGHNYILIATSKGYMKLVEKSEFPIKKRGQKGLMAVKLNKDDYVV 729

Query: 652 LVVKVT-GDHVAVVGENRKLLIFSID 676
            ++ V  G+ V V  ++ KLL   +D
Sbjct: 730 SMIPVDIGEDVLVQTKHGKLLKIKVD 755


>gi|284928878|ref|YP_003421400.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A]
 gi|284809337|gb|ADB95042.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A]
          Length = 824

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 245/775 (31%), Positives = 406/775 (52%), Gaps = 46/775 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            + + SL   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K 
Sbjct: 12  KIISTSLHTEMRHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPFRKC 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQ+VYD+LVR+AQ F  RYPL+SG GNFG+ID D  AA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTETR 131

Query: 136 MTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ +A   IL  + E+ +DF + ++    EP+V P K PNLL NG +GIAVGMAT+IP H
Sbjct: 132 LSSIANEGILGEIGENIIDFNNNFDNSQQEPIVLPVKIPNLLVNGCTGIAVGMATNIPPH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +AL++ PE+S EKL + I GPDFPTGG I+++ E I ++YR G+G  RVR 
Sbjct: 192 NLGELIDGLIALLEKPELSNEKLWKIIPGPDFPTGGEIIQT-EGIKDAYRDGKGIIRVRG 250

Query: 255 RWCVEEVGRGSWC------IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +E++  G         +++TE+PYQV K+  IEKIA+L+   R+  + DIRDES   
Sbjct: 251 VVSIEKINVGKKRRQERTALIITELPYQVNKAAWIEKIADLVNCGRLEGIADIRDESDRT 310

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R     L+++ ++  + +E  F   M  L     PQ + L  +L+E+L+ R
Sbjct: 311 GMRVVIELKRDAVTKLVLKELYKKTALEHNFGAIMLALVD-NQPQQLSLRSLLEEFLSFR 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTE 425
            + L R+ S  ++    + +ILKGLLIA  N+D++I I+ N       K        L E
Sbjct: 370 EKTLNRQYSNELKNCQDQSDILKGLLIALANLDKVINILCNSVDSTIAKEQFQKELGLNE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL + +R L  LE  +I++E + L  +  K++ LL + K+   ++  E+R +K+ 
Sbjct: 430 KQANGILAMPMRRLTGLERKKIETEYEELQIKVNKLEILLKNRKEFLAELKKELRSLKKK 489

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +       +RRT            ++   ++     ++ S +    + K  +++LS    
Sbjct: 490 YGD-----KRRTRIIGKDTTKINNIETQKLDVPKQPILQSKKKISHTPKQLNLNLSKDSI 544

Query: 546 KEGDSLKIALH------------------AHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
            E                               ++I++++ +GKAY +   ++       
Sbjct: 545 LEMTYQGEVAWRKPEDRGFENKLLIYSEIIGEREQIIVITDNGKAYPIKILDIPYIDVQS 604

Query: 588 EAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             +  L+  N  +D  +               LL+++++G    ++ SE+ + T +G + 
Sbjct: 605 TFLISLLPENAQKDTKSVISIFFLTKNVENRNLLLLTNQGKIKRIQLSELNSLTNRGLSL 664

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGGI 697
           +K+ +++ +K +  V   D + +   + +LL F +  ++IP M+R  +G +    +    
Sbjct: 665 MKLKNDDFLKYISFVKEEDEIVIAITSGRLLRFQMKNEEIPVMNRNTQGEQAFRLRSKEE 724

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             V C  + +    +  +   Y +  N L   + K G +G+   K   ++   L 
Sbjct: 725 I-VGCINMNKKDDILLVSKLGYGKRLNVLDLRITKLGDIGTQALKFIHQADSLLG 778


>gi|322392127|ref|ZP_08065589.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris
           ATCC 700780]
 gi|321145027|gb|EFX40426.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris
           ATCC 700780]
          Length = 823

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 215/748 (28%), Positives = 383/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   +EKL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDATVYMIDHPTAKVEKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI E+ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAVIGDERTLYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  +E 
Sbjct: 478 ----RLSSLEDTAKVIEIDTVSLIAEEETYVSVTKAGYIKRTSPRSFAASTLEEIGKRED 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ +T G     P   L   R       L   + + +        
Sbjct: 534 DRLIFTQVAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYA 593

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
                +D        +  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 594 EVVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDDSDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++ +N   L F+I+++P +  +  GV+  + K      V           +    R
Sbjct: 654 DDVLLISKNGYALRFNIEEVPVVGAKAAGVKAMNLKADDEIQVAFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSTEEIPATSRAKRGLQVLRELK 739


>gi|83319625|ref|YP_424037.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283511|gb|ABC01443.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 795

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 239/736 (32%), Positives = 379/736 (51%), Gaps = 31/736 (4%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PDL+DG KPVHRRII+AM+++G+      KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYTEAR+ +++  +++ +D D V F
Sbjct: 61  YETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARLAKISNYLIKDIDMDTVPF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
            D Y+  + EP       PNLL NGT GIAVGMATSIP HN++E+  A  A IDN +I+I
Sbjct: 121 IDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDITI 180

Query: 215 EKL-LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           +++   +I+GPDFPTG ++    + + E Y+ GRG   +RA+   EE        VVTEI
Sbjct: 181 DEILDNHILGPDFPTGALMTNGSK-MREGYKTGRGSVIIRAKIDFEENK-KHDRFVVTEI 238

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQ  K+++IEKIAEL+  K I  + DIRDES  +   ++    +  +PD+++  ++  +
Sbjct: 239 PYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIELKKDANPDVVLSKLYKYT 298

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +++ F +N+  L+      ++ L  I+K ++  +  V+ +RS F    + +R  IL+ L
Sbjct: 299 ALQSSFSINLLTLNNNLP-VLLDLKTIIKNYVEFQVNVIIKRSIFEKNKLTKRYHILEAL 357

Query: 394 LIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
            IA  N+D++I II+N    +     + ++++  E Q  AIL++RL+ L  LE  +I  E
Sbjct: 358 HIALDNVDDVINIIKNSKTSEEAKIQLTNKYNFDEEQNKAILDMRLQRLVGLERDKITLE 417

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           + N+      +D L+N+ ++Q N +  ++ E+ + F        RRT   +         
Sbjct: 418 MTNIKERLTYLDILINTKEEQNNVLKNQLNEIADKFGD-----NRRTELID--EELINIE 470

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-------HFKEGDSLKIALHAHTTDRI 563
            + +I      +++S  G+IR +      +          + +  D + IA      D +
Sbjct: 471 DEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVNAEPNDPIDIATMGKAKDWV 530

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH---NQDIVTAFVYDSTC----KLLV 616
           L  +  GK Y     N+ S       + ++  LN       I       +       L  
Sbjct: 531 LFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDKITAILPLRNNKEKFNYLTF 590

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSI 675
           V+ KG     + SE     R GK  + +   +++  V   TG   + +  E+ K++    
Sbjct: 591 VTQKGMIKRTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTIFIANESGKVIRIKE 650

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             +   SR G GVR    +   +  V      +       + +   +        +  R 
Sbjct: 651 SVVNPQSRVGSGVRALKLETNDVV-VGAISSFKLTHITTVSNKGLFKKTPIDDYRISGRN 709

Query: 735 GVGSLVPKGFPRSGKF 750
           G G  V     R+GKF
Sbjct: 710 GKGIKVMNLNQRTGKF 725


>gi|73916840|gb|AAZ93288.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 215/747 (28%), Positives = 391/747 (52%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|301511579|ref|ZP_07236816.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB058]
          Length = 739

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 271/745 (36%), Positives = 432/745 (57%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPLI GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E+       IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIEK-----NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+     + A     +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 GDE-----RRSPIVARAEA-VQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GKTFL V  + K   ++      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +       +     + +  + +  +      +D
Sbjct: 651 SAGRLLILDLAELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  ++GKR   G L+P+G+ ++ K 
Sbjct: 711 LQKYMGKRASKGQLLPRGYQKANKL 735


>gi|307708547|ref|ZP_07645012.1| DNA topoisomerase IV, A subunit [Streptococcus mitis NCTC 12261]
 gi|4959488|gb|AAD34369.1|AF129764_3 ParC [Streptococcus mitis]
 gi|307615463|gb|EFN94671.1| DNA topoisomerase IV, A subunit [Streptococcus mitis NCTC 12261]
          Length = 823

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 215/748 (28%), Positives = 389/748 (52%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIDKKTVPFSWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   ++KL+E++ GPDFPTGG I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGG-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNSKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ +T G     P   L   R           + +   N++I+  
Sbjct: 534 DRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D        +  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 594 EVVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDDTDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++ +N   L F+I+++P +  +  GV+  + K+                 +    R
Sbjct: 654 DDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDTLQSAFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIDEIPATSRAKRGLQVLRELK 739


>gi|239502129|ref|ZP_04661439.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB900]
          Length = 739

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 271/745 (36%), Positives = 433/745 (58%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E+       IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIEK-----NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+     + A     +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 GDE-----RRSPIVARAEA-VQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GKTFL V  + K   ++      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +       +     + +  + +  +      +D
Sbjct: 651 SAGRLLILDLVELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  ++GKR   G L+P+G+ ++ K 
Sbjct: 711 LQKYMGKRASKGQLLPRGYQKANKL 735


>gi|228998348|ref|ZP_04157940.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock3-17]
 gi|229005831|ref|ZP_04163526.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock1-4]
 gi|228755411|gb|EEM04761.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock1-4]
 gi|228761393|gb|EEM10347.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock3-17]
          Length = 806

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 213/751 (28%), Positives = 385/751 (51%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G      
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDIDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  S++ LL  I GPDFPTGG I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSSVDDLLTVIKGPDFPTGG-IIQGLDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQVPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I+ GL+ A   +DE+I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSEYELRKAENRQHIVAGLMKALSILDEVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E + L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEKEAEELEKKITELQAILQSEKKLLQVIKADLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
           +      R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 N------RRAVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ ++
Sbjct: 533 KEGDILLERFDTNTTEIVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETLI 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF+ +++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATHGAYALIFNEEEVSPVGVRAAGVKGINLKEDDYVASGRPLNSEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|293604500|ref|ZP_06686905.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Achromobacter piechaudii
           ATCC 43553]
 gi|292817081|gb|EFF76157.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Achromobacter piechaudii
           ATCC 43553]
          Length = 776

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 263/750 (35%), Positives = 404/750 (53%), Gaps = 41/750 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI+ AM  MGL  GA   KSAR+V
Sbjct: 25  ITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILFAMQAMGLAAGAKPVKSARVV 84

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI GQGNFG+ DGD+AAA RYTEAR+T +
Sbjct: 85  GDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTPI 144

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E+
Sbjct: 145 AKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPPHNLREV 204

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +ALI  P++   +L   I GPDF  GG I+     I + Y  GRG  +VRARW  E
Sbjct: 205 AQACVALIKQPQLPDAELHAMIPGPDFAGGGQIITPAADIAQIYGTGRGSLKVRARWTFE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--------------- 304
           E+ RG W +V+TE+P      +++E+I E+   K     + +  E               
Sbjct: 265 EMARGQWQLVITELPPGTSGQKVLEEIEEITNPKVKSGKKSLTPEQTQAKAVMLNLLDAV 324

Query: 305 -----SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
                    VR+V  PK   +D D  + ++   + ME+   +N+  +     P+   L  
Sbjct: 325 RDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSSSINLVCIGTDGRPRQKGLRD 384

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+A R   + RR+ FR+  +  R+ +L+G ++ YLN+DE+I  IR  D+P+  ++ 
Sbjct: 385 ILVEWVAFRTHTVVRRTRFRLDKVTDRIHVLEGRMLVYLNVDEVIQTIRESDEPRAALME 444

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L+E Q + IL +RLR L +LE ++I+ EL +   ++  +  LL++       +  EI
Sbjct: 445 RFKLSERQAEDILEMRLRQLARLEGFKIEQELADKRKDQISLQELLDNPTTLKRLLIKEI 504

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT      RA      +  +  EP+TV++S +GW+R+ + H  D
Sbjct: 505 EADAKQYGDE-----RRTLIETAERAVL----ETKVLDEPVTVIVSQKGWLRARQGHGHD 555

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            S   FK+GD L  A    TTD ++ +  +G+ Y++P G L S RG G+ +  +IDL   
Sbjct: 556 ASQFTFKQGDDLYGAFECRTTDTLIAMGDNGRVYSVPVGGLPSARGDGQPVTTMIDLESG 615

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             IV         + L+ +  G  F  + S++++  R GK F+ + + ++M   V +   
Sbjct: 616 TRIVHTIAAAPESRWLLATRGGYGFAAKLSDMVSRQRAGKQFITLETGDEMLRPVPLFEG 675

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             H+A++    K L+F +D+   +   G+G  L         D        G   + + G
Sbjct: 676 ATHLALLSAKGKFLVFGLDECKSLSGGGRGTILMGLDASDKLDQTVPIGARG---LRATG 732

Query: 717 RSYNRSEND------LLGWLGKRGGVGSLV 740
              N+   D      L  ++GKR   G  +
Sbjct: 733 IYRNKLTEDILAGDALAPYVGKRARKGRQL 762


>gi|184156534|ref|YP_001844873.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii ACICU]
 gi|183208128|gb|ACC55526.1| Type topoisomerase IV (DNA gyrase/topo IV) [Acinetobacter baumannii
           ACICU]
          Length = 739

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 270/745 (36%), Positives = 432/745 (57%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S  KL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDGKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E+       IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIEK-----NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+     + A     +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 GDE-----RRSPIVARAEA-VQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GKTFL V  + K   ++      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +       +     + +  + +  +      +D
Sbjct: 651 SAGRLLILDLVELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  ++GKR   G L+P+G+ ++ K 
Sbjct: 711 LQKYMGKRASKGQLLPRGYQKANKL 735


>gi|169797610|ref|YP_001715403.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AYE]
 gi|332851017|ref|ZP_08433152.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013150]
 gi|332865611|ref|ZP_08436444.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013113]
 gi|169150537|emb|CAM88445.1| DNA topoisomerase IV, subunit A [Acinetobacter baumannii AYE]
 gi|332730300|gb|EGJ61624.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013150]
 gi|332735200|gb|EGJ66278.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013113]
          Length = 739

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 271/745 (36%), Positives = 433/745 (58%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E+       IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIEK-----NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+     + A     +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 GDE-----RRSPIVARAEA-VQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GKTFL V  + K   ++      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +       +     + +  + +  +      +D
Sbjct: 651 SAGRLLILDLAELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  ++GKR   G L+P+G+ ++ K 
Sbjct: 711 LQKYMGKRASKGQLLPRGYQKANKL 735


>gi|302811412|ref|XP_002987395.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii]
 gi|300144801|gb|EFJ11482.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii]
          Length = 880

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 233/786 (29%), Positives = 376/786 (47%), Gaps = 64/786 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            +    V L     E YL+YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL      +
Sbjct: 19  NDRTLLVELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPHR 78

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-----------PFVQRYPLISGQGNFGNID 122
           K AR+VGEV+GK HPHGD +VYD+LVRLAQ            F  R PLISG GNFG++D
Sbjct: 79  KCARVVGEVLGKFHPHGDTAVYDALVRLAQASYTLFFSSFISFSLRSPLISGHGNFGSLD 138

Query: 123 GDSAAAYRYTEARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           GD AAA RYTE R+  ++E + L  +D D VDF   ++    EPVV P++ PN+L NG S
Sbjct: 139 GDPAAAMRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGAS 198

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A  ALI NP  ++E+L+E++ GPDFPTGG I+     I +
Sbjct: 199 GIAVGMATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQIL-GISGIAD 257

Query: 242 SYRLGRGGFRVRARWCVEEV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           ++R GRG   VR +   EE+        I++TEIPY   KS L+ KIAEL+ +K +  + 
Sbjct: 258 AFRTGRGTITVRGKADFEELEGKISRSAIIITEIPYGTNKSTLVAKIAELVNSKTLEGVS 317

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES      ++    R     +++ +++  + +++RF  N+ V  + + P+V  +  
Sbjct: 318 DIRDESDRAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNL-VGILNKEPEVFSIKR 376

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID---EIIAIIRNEDKPKPV 416
           +L+ +L  R  V+ RR+   +   + R  +L+G L     +D   +++   ++       
Sbjct: 377 LLEIFLDFRCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQA 436

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +   F L+  Q +A+L + LR +  LE  +I  E ++LLA+   +  LL++ ++    + 
Sbjct: 437 LQKDFELSAAQAEALLGMPLRRITSLERNKILEEHNSLLAQASNLRELLSNKQRVLRVVE 496

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E   +K  F        RRT   E        +   +I      + +S +G+I+ ++  
Sbjct: 497 KEALALKNEFGSP-----RRTVLEEDGDGRIDNID--VIPNNESFLTLSEKGYIKRMQPD 549

Query: 537 SV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG- 587
           +           S    K  D +  +      D +L+ S  G  Y+  A  +        
Sbjct: 550 TFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERGVVYSFRAYQVPECSRTSA 609

Query: 588 -EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              I  ++ +   + I + F    +     L++++SKG     E     +   +G   ++
Sbjct: 610 GVPIIQVLSIPAGERITSIFPLSEFREDHFLVMLTSKGYIKRTELPAFSSIRPQGIVAIQ 669

Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
           +   +++K V   T  D + +   N   +     +   M RG +G+R    K+G     I
Sbjct: 670 LMEGDELKWVRLATQSDRIFIGSRNGMAMQAPC-EFRSMRRGARGLRAMRIKEGDEIAAI 728

Query: 702 CFKI----------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                                      E    +  +     +              VG +
Sbjct: 729 DIVPGSVWKESPTLLCTHVLCKRSKASEAPWLLFVSENGMAKRVPITSFPRHGLNKVGVI 788

Query: 740 VPKGFP 745
             K  P
Sbjct: 789 GCKFVP 794



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 12/107 (11%)

Query: 614 LLVVSSKGNAFIVEESEIIAN--TRKGKTFLKVSSEEKMKLVVKV--------TGDHVAV 663
           LL VS  G A  V  +    +   + G    K    +++  +  V        + + + V
Sbjct: 760 LLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGDRLASMFVVGTSVSDGESNEEIVV 819

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEG 708
             +      F + +I   SR G+G++L     D  +  V      + 
Sbjct: 820 GTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDKVKSVSVVAASDS 866


>gi|322506403|gb|ADX01857.1| parC [Acinetobacter baumannii 1656-2]
          Length = 739

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 271/745 (36%), Positives = 432/745 (57%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPLI GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E+       IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIEK-----NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+     + A     +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 GDE-----RRSPIVARAEA-VQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GKTFL V  + K   ++      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +       +     + +  + +  +      +D
Sbjct: 651 SAGRLLILDLAELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  ++GKR   G L+P+G+ ++ K 
Sbjct: 711 LQKYMGKRASKGQLLPRGYQKANKL 735


>gi|260551113|ref|ZP_05825317.1| DNA topoisomerase IV [Acinetobacter sp. RUH2624]
 gi|260405880|gb|EEW99368.1| DNA topoisomerase IV [Acinetobacter sp. RUH2624]
          Length = 739

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 271/745 (36%), Positives = 432/745 (57%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQMTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + VE+       IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYSVEK-----HEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+     + A     +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 GDE-----RRSPIVARAEA-VQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
           + D   +L+  SS G  F  +  ++    + GKTFL V  + K   ++      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTTAKAGKTFLTVPEKSKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +       +     + +  + +  +      +D
Sbjct: 651 SAGRLLILDLAELPNLNKGKGNKLIQLEAKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  ++GKR   G L+P+G+ ++ K 
Sbjct: 711 LQKYMGKRASKGQLLPRGYQKANKL 735


>gi|32448550|gb|AAO16802.1| ParC [Streptococcus pneumoniae]
          Length = 823

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 214/748 (28%), Positives = 389/748 (52%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   ++KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVVTEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + +   N++I+  
Sbjct: 534 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D        +  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 594 EVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 654 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIEEIPATSRAKRGLQVLRELK 739


>gi|213155597|ref|YP_002317642.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB0057]
 gi|301346045|ref|ZP_07226786.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB056]
 gi|301596192|ref|ZP_07241200.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB059]
 gi|332874996|ref|ZP_08442843.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6014059]
 gi|213054757|gb|ACJ39659.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB0057]
 gi|323516270|gb|ADX90651.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332736806|gb|EGJ67786.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6014059]
          Length = 739

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 271/745 (36%), Positives = 433/745 (58%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E+       IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIEK-----NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+     + A     +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 GDE-----RRSPIVARAEA-VQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GKTFL V  + K   ++      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +       +     + +  + +  +      +D
Sbjct: 651 SAGRLLILDLAELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  ++GKR   G L+P+G+ ++ K 
Sbjct: 711 LQKYMGKRASKGQLLPRGYQKANKL 735


>gi|326568448|gb|EGE18528.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC7]
          Length = 745

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 268/742 (36%), Positives = 437/742 (58%), Gaps = 15/742 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   S+    E  YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   A  KKS
Sbjct: 4   QIDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G+ D   S AA RYTEA
Sbjct: 64  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
            M++ A+++L  +++  VD++D ++   SEPV  P++ PN+L NGT+GIAVGMAT IP H
Sbjct: 124 NMSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ NPE+S ++L++ +  PD PT   I+  +  ++  Y  G+G +++RA
Sbjct: 184 NLHEVVKACIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIV 312
            +      + +  +++  +PYQV  ++++E+IA+L++ K++P + +IRDES      RIV
Sbjct: 244 TYH--TDPKQNHLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K   L+ D +M  +F  +D+ET + +NMN++ +   P+V  L  IL EWL+ R+ V+
Sbjct: 302 IELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR  +R+  I+ R+ IL GLLIAYLNIDEII IIR  + PK  +++RF LT+ Q +AIL
Sbjct: 362 IRRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAIL 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++LR L KLEE ++ +E D L AE+  I   LN+ +     +  E+    +    +   
Sbjct: 422 DIKLRQLAKLEEIELTAEHDRLEAERLLISEQLNNPEMLTKLLIDELTADAKTHGDA--- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RR+   + + +        +   EPIT ++S  GWIR+ K H  D + ++++ GD+  
Sbjct: 479 --RRSPVVQRAESSSLKAVDLI-ASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYL 535

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                 +T+R++L+   G++Y L + +L S R  G+ I  L++L     I     Y+ T 
Sbjct: 536 THALGKSTERLILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTN 595

Query: 613 ---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG-ENR 668
               +L+ SS G  FI + + +    + GK+ + ++    + +VV    D +  V   N 
Sbjct: 596 GSPNVLMASSLGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNG 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            LLIF+ D++P++++GKG +L + K G     I          I +  R+   + ND+  
Sbjct: 656 NLLIFASDELPKLAKGKGNKLANLKAGETITAITALSDTDALVITAGKRTLTLNPNDIAN 715

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
           ++  R   G+ +PKGF +    
Sbjct: 716 YIAHRANRGNPLPKGFGKVSNV 737


>gi|262280640|ref|ZP_06058423.1| DNA topoisomerase IV [Acinetobacter calcoaceticus RUH2202]
 gi|262257540|gb|EEY76275.1| DNA topoisomerase IV [Acinetobacter calcoaceticus RUH2202]
          Length = 739

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 275/745 (36%), Positives = 430/745 (57%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L  +  +  S+    E+ YL YA+  I +RA+P + DG KPV RRI+ AMSE+GL   
Sbjct: 2   TSLAHQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVFAMSELGLKNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   D++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLNELGQGTTDWQDNFDGSLKEPITLPARIPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVIKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE- 307
            +R+RA + +E+       IV+TE+PYQV  S++I +IA+ + AK++PL+ DIRDES   
Sbjct: 242 SYRMRAVYTIEK-----NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDIRDESDHA 296

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + E 
Sbjct: 357 IRKKTVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFKIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRQEQDELAAKAAIIREQLGNPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+     + A     +Q ++  E +TVV+S  GWIR+ K   VD   L+++
Sbjct: 477 GDE-----RRSPIVARAEA-VQIKEQDLVPAETVTVVLSEAGWIRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  RI  L   G++Y LP  +L S RG GE +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRIYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
           + D   +L+  S+ G  F  +  ++  N + GKTFL V  + K   ++      H+AV+ 
Sbjct: 591 LEDEASELIAASTSGYGFKTQAKQLDTNAKAGKTFLSVPDKSKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +       +     + +  + +  +      +D
Sbjct: 651 SAGRLLIIDLAELPNLNKGKGNKLIQLEAKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  +LGKR   G L+P+G+ ++ K 
Sbjct: 711 LQKYLGKRASKGQLLPRGYQKANKL 735


>gi|319939076|ref|ZP_08013440.1| DNA topoisomerase 4 subunit A [Streptococcus anginosus 1_2_62CV]
 gi|319812126|gb|EFW08392.1| DNA topoisomerase 4 subunit A [Streptococcus anginosus 1_2_62CV]
          Length = 818

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 211/748 (28%), Positives = 384/748 (51%), Gaps = 28/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+  ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPKAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IVVTEIPY + K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVVTEIPYDINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKSDAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F     
Sbjct: 420 VTLQLYRLTNTDVVILEEEQAELREKIAMLSAIIGDERTMYNLMKRELREVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+++     S +   +  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETFVSVTRGGYLKRTSPRSFNSSTVDEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ +  G     P   L   R       L   + + +        
Sbjct: 534 DRLVFVSSAKTTQHLLIFTNLGNVIYRPVHELADIRWKEIGEHLSQTITNFETNEEVLYA 593

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
                +D      + +  G    VE  E         K   F K+   ++++  +  +  
Sbjct: 594 ELVDNFDEGTYFAL-TKLGQIKRVERKEFSPWRTYKSKSVKFAKLKNEDDQIITLSPIKL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R
Sbjct: 653 DDVMLVTQNGYALRFNIEEVPVVGAKAAGVKAINLKKNDVLAAAFIANTDSLYIL--TQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +        +  R   G  V +   
Sbjct: 711 GALKRMAVADIPVTSRANRGLQVLRELK 738


>gi|293365613|ref|ZP_06612322.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus oralis ATCC
           35037]
 gi|291315981|gb|EFE56425.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus oralis ATCC
           35037]
          Length = 826

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 213/748 (28%), Positives = 384/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTGG I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGG-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ +T G     P   L   R       L   + + +        
Sbjct: 534 DRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYA 593

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
                +D      V +  G    VE  E         K   + K+  E +++  V  +  
Sbjct: 594 EVVDQFDDATTYFVATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++ +N   L F+I+++P +  +  GV+  + K                  +    R
Sbjct: 654 DDVLLISQNGYALRFNIEEVPVVGAKATGVKAMNLKADDALQAAFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIEEIPATSRAKRGLQVLRELK 739


>gi|224476483|ref|YP_002634089.1| DNA topoisomerase IV subunit A [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421090|emb|CAL27904.1| topoisomerase IV subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 808

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 220/756 (29%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYDSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQEWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++++++E +L+ +++D V F   Y++  +EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSRLSEELLRDINKDTVPFVPNYDDTTTEPMVLPARFPNLLINGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+IS+ +L++Y+ GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLGEVIQATLKYIDNPDISVSQLMKYVKGPDFPTGGIIQG-IDGIKKAYETGKGRIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+    E +  G   ++VTEIPY+V KS L++KI EL   KR+  + ++RDE+      +
Sbjct: 240 RSTVETETLRSGRQELIVTEIPYEVNKSALVKKIDELRADKRVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ D ++  ++  +D++  +  NM  +S    P++M +  I+  +L H+ +V+
Sbjct: 300 AIELKKDVNSDAILNFLYKNTDLQISYNFNMVAISD-GRPKLMGIREIIDSYLNHQIDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            +R+ + +   ++R+ I++GL+ A   +DE+IAIIR        K  +V+ F  TE Q +
Sbjct: 359 TKRTRYDLFHAEKRMHIVEGLMKALSVLDEVIAIIRGSKNKKDAKDNLVAEFDFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A+   + ++L++     N I  E++E++  F   
Sbjct: 419 AIVTLQLYRLTNTDIVALEKEHGELEAKINDLRNILDNHDALLNVIKDELKEIRTRFKTE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                 R +  E   A+    ++ ++  E   + +S  G+I+     S + + +      
Sbjct: 479 ------RLSRIEAEIAEIKISKEVIVPSEETILSLSRDGYIKRTSVRSFNANRVDEVGLK 532

Query: 550 SLKI---ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVT 604
                   L  +T    L+ +  G+   LP   L   +     + I  L+ + +++ ++ 
Sbjct: 533 EGDALLSHLETNTQHIALVFTNKGRYLYLPVHKLPDVKWKDLGQHISQLVPIENDEYVLD 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +      ++ +  G     E          K    +K+   +++  V+++  D 
Sbjct: 593 VFTEPDFKQNADYIMATKNGMIKKSELELFKTTRFNKPLIAMKLKDNDELINVMRIEADQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  +V      L +S D++     R  GV+  + KD  + ++    I    T + +  R 
Sbjct: 653 LITIVTHTGMSLTYSTDELSSTGLRAAGVKSINLKDDDVVEMTQL-IQPNDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
             +     +    KR   G  + K    R  + + +
Sbjct: 712 AVKRIGFKVLSEAKRAQRGIKLLKELKSRPHRIVGA 747


>gi|94311455|ref|YP_584665.1| DNA topoisomerase IV subunit A [Cupriavidus metallidurans CH34]
 gi|93355307|gb|ABF09396.1| DNA topoisomerase IV, subunit A [Cupriavidus metallidurans CH34]
          Length = 776

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 276/762 (36%), Positives = 417/762 (54%), Gaps = 33/762 (4%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +  +     +E   +++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM  M
Sbjct: 2   DQPDITFQADEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMQAM 61

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL   A   KSAR+VGEV+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD
Sbjct: 62  GLRADAKPVKSARVVGEVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGD 121

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR+T ++ L+L  +D   VDF   Y+  + EP + P++ P +L NG SGIA
Sbjct: 122 GAAAMRYTEARLTPISRLLLDEIDMGTVDFLPNYDGSEEEPKLLPARLPFVLLNGASGIA 181

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  A +A+I NP IS+  LL  + GPD+P GG I+     I + Y 
Sbjct: 182 VGMATEIPPHNLREVAGATVAMIRNPNISLADLLALMPGPDYPGGGQIISPASEIAQIYE 241

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------- 297
            GRG  +VRARW +EE+ RG W +VVTE+P      +++E+I E+   K           
Sbjct: 242 SGRGSLKVRARWTIEEMARGQWQMVVTELPPGTSAQKVLEEIEEITNPKIRTGKKALTPE 301

Query: 298 -----------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
                      L+ +RDES     VR+V  PK+++ +    ++++   + +E+  P+N+ 
Sbjct: 302 QTQLKTTMLSVLDAVRDESGKDAPVRLVFEPKSKNTEQQDFIQTLLAHTSLESGAPINLV 361

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           ++     P+   L  IL+EW+  R   + RR+ F++  ++ R+ IL+G ++  LNIDE+I
Sbjct: 362 MIGTDGRPRQKGLQEILREWIEFRFATVTRRTRFQLTKVEDRIHILEGRMLVLLNIDEVI 421

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
            IIR  D+PKP ++  F L++ Q + IL +RLR L +LE  +I+ EL  L  E+ ++D L
Sbjct: 422 RIIRESDEPKPALIEAFRLSDRQAEDILEIRLRQLARLEAIKIEQELAKLRDEQAELDVL 481

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L S      +I  EI +  + +S   D   RRT   E SRA      +  +  EP+TV++
Sbjct: 482 LKSETMMRRRIIKEIEQDAKQYS-PEDKDPRRTLIQEASRAAA----EVKVIDEPVTVIV 536

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           S +GW+R+ + H  D S   FK GD+L       T D +L   ++G+ Y++    L  GR
Sbjct: 537 SGKGWVRTRQGHGHDASQFTFKAGDNLYGTFECRTIDTLLAFGSNGRVYSVAVSGLPGGR 596

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G G  +  LIDL     I   F   +  ++L+ ++ GN F+ +  ++I   + GK F+ +
Sbjct: 597 GDGVPVTTLIDLAAGTQIAHTFAGAAEQRMLIATAGGNGFVTKVGDMIGRQKAGKAFVTL 656

Query: 645 SSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVI 701
              + +     +  +  HVA    N +LL+  +D++  +S  G+GV L   +        
Sbjct: 657 DEGDTLLAPTPIGEECTHVACFSANGRLLLAGLDEVKVLSAGGRGVILMELEPKETLMQA 716

Query: 702 CFKICEGLTWIDSAGRSYNRSE-----NDLLGWLGKRGGVGS 738
                 GL       R             L+ ++GKR   G 
Sbjct: 717 VAVGAPGLMISGIGVRGGKVPPQKLAGKTLIPYVGKRARKGK 758


>gi|77407105|ref|ZP_00784104.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
 gi|77174287|gb|EAO77157.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
          Length = 770

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 217/706 (30%), Positives = 360/706 (50%), Gaps = 21/706 (2%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG+
Sbjct: 1   MNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG 
Sbjct: 61  MDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E  +A   ++DNP+++  +L+E I GPDFPTG  +V  R  I 
Sbjct: 121 TGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGA-LVMGRSGIH 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  G+G   +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  
Sbjct: 180 RAYETGKGSIVLRSRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITA 239

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES+ +    +    R+   ++++ ++F L+ ++T F  NM  +    VP+++ L  I
Sbjct: 240 VRDESSREGVRFVIEVRRAASANVILNNLFKLTSLQTNFSFNMLAIEK-GVPKILSLRQI 298

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           +  ++ H++EV+ RR+ F       R  IL+GLL+A  ++DE+I IIRN +     +  +
Sbjct: 299 IDNYIEHQKEVIVRRTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAEL 358

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +SRF L+E Q  AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  
Sbjct: 359 MSRFELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKE 418

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSL 533
           E+ EVK  ++ +    R      EV   +   L +             +    +   R+ 
Sbjct: 419 EMDEVKRKYADA---RRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQ 475

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
           K     +        D ++  +   T D +L  +  G+ Y L A  +       +   I 
Sbjct: 476 KRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIV 535

Query: 592 LLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            L+ L+  + I T         +       + +G       SE     + G   + +   
Sbjct: 536 NLLKLDEGETIQTIINARKEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKEN 595

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +++  V+ +   + V +       + F ++ +  M R   GVR  + ++G    V   +I
Sbjct: 596 DELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNMGRTATGVRGVNLREGDKV-VGASRI 654

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             G   +    + Y +           RGG G        ++G   
Sbjct: 655 VNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLA 700



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 66/190 (34%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               L A++ KE D L   L     + +++ +  G +       + +
Sbjct: 570 IVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRN 629

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                  ++  ++L     +V A    +  ++L+++ KG     E SE     R GK   
Sbjct: 630 MGRTATGVRG-VNLREGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIK 688

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +    +LV     + + V+ +   ++  ++  I +  R   GV++        
Sbjct: 689 TANITAKNGPLARLVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAK 748

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 749 IVTVALVEQE 758


>gi|296270352|ref|YP_003652984.1| DNA topoisomerase [Thermobispora bispora DSM 43833]
 gi|296093139|gb|ADG89091.1| DNA topoisomerase (ATP-hydrolyzing) [Thermobispora bispora DSM
           43833]
          Length = 841

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 232/765 (30%), Positives = 389/765 (50%), Gaps = 36/765 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +  +   +E +  + +   +   +L YA S I +RA+PD RDG KPV RRI+++MSEMGL
Sbjct: 9   TAPDQDFQERIVDIDVAAEMRTSFLEYAYSVIYQRALPDARDGLKPVQRRILYSMSEMGL 68

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                  KS+R+VGEV+GKLHPHGD ++YD+LVR+AQPF  R PL+ G GNFG+ D D+ 
Sbjct: 69  RPDRGHVKSSRVVGEVMGKLHPHGDAAIYDALVRMAQPFSMRLPLVDGHGNFGSPD-DAP 127

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+   A L++Q +DE+ VDFR  Y+ +++EP V P+ FPNLL NG SGIAVG
Sbjct: 128 AAMRYTEARLAPAAMLMVQSIDEETVDFRPNYDGQETEPAVLPAAFPNLLVNGASGIAVG 187

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+  AA  L+  P+ ++++L++++ GPD PTGG ++   ++I E+Y  G
Sbjct: 188 MATNIPPHNLAEVIGAARHLLKKPDATLDELMQFVPGPDLPTGG-LIIGLDAIREAYETG 246

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG FR+RAR  +E V      IVVTE+P+ V   R++ KI EL+ AK++  + D++D + 
Sbjct: 247 RGTFRMRARATIENVTARRKAIVVTELPFNVGPERVVAKIKELVQAKKLVGIADLKDLTD 306

Query: 307 -EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++       +P+ ++E ++ L+ ME  F +N   L     P+ + L  +L  ++
Sbjct: 307 RHKGLRLVIEVKTGFNPEAVLEELYRLTPMEETFGINSVALVD-GQPRTLGLRDLLAVYV 365

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            HR EV+ RRS++R +  + R+ +++GL+ A LNIDE+I +IR  D P      ++  F 
Sbjct: 366 NHRLEVVRRRSAYRRRKREERLHLVEGLITALLNIDEVIQVIRTSDDPAHARSRLMETFG 425

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q   IL+  LR L + ++ +++ E + L AE  +++++L S  +    ++ E+ EV
Sbjct: 426 LSEAQAGYILDTPLRRLTRYDKLELEREKEGLQAEIAELNAILGSEDRLRRVVSKELAEV 485

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RRT   + + A   T     +  +P  V++S+ G I      S     
Sbjct: 486 AKKYGTP-----RRTQLLDSAEAALKTAIPLEVADDPCLVLLSSTGLIARTADASPLPGD 540

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA--------YTLPAGNLLSGRGHGEAIQLLI 594
                 D L  A+       + ++++ G+          TLPA          + +   +
Sbjct: 541 GPRAPHDVLVSAVRTTVRGEVGVITSKGRMIRVSVVELPTLPASGDPPSLAGAQPVTEYV 600

Query: 595 DLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            L  ++ +V     D     + + +++G    V         R     + +   +++   
Sbjct: 601 TLEPDEHVVGLGSLDEAGHGIALGTAQGVVKRVAPD--YPVNRDDFEIISLREGDRVVGA 658

Query: 654 VKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
           V++      +  +  + +LL F    +    R   GV      +G  +            
Sbjct: 659 VELESPDHDLVFITSDAQLLRFPAATVRPQGRPAGGVAGIRLAEGARVIWFGAVDPARES 718

Query: 710 TWIDSAG--------RSYNRSENDLL-GWLGKRGGVGSLVPKGFP 745
             +  AG        ++     +D        R   G    +   
Sbjct: 719 RVVTVAGSSTALPGTQTGTVKVSDYAVFPPKGRATGGVRAQRFLK 763


>gi|73916826|gb|AAZ93281.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916834|gb|AAZ93285.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916902|gb|AAZ93319.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 211/747 (28%), Positives = 384/747 (51%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF--- 606
            L     A TT  +L+ ++ G     P   L   R       L   + + +         
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVE 592

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
               +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|87308319|ref|ZP_01090460.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645]
 gi|87288876|gb|EAQ80769.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645]
          Length = 922

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 233/825 (28%), Positives = 370/825 (44%), Gaps = 103/825 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   L+E YL YA+S I  RA+PD+RDG KP  RRI+ AM+++ L  G+   K A+I 
Sbjct: 1   MSIEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGSGRVKCAKIS 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+  G  HPHG+  +Y +LVR+AQ +  RY L+  QGNFG+I G   AA RYTEARM+  
Sbjct: 61  GDTSGNYHPHGESVIYPTLVRMAQEWNTRYLLVDKQGNFGSIAGLPPAAMRYTEARMSPY 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+++L+ +  D VD+  TY+E ++EP V PSK+PNLL NG+ GIAVGMATSIP HN+ E+
Sbjct: 121 AQMLLEDLRLDTVDYIPTYDERNTEPTVLPSKYPNLLVNGSQGIAVGMATSIPPHNLGEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C A + +I+ P + IE+LL+ I GPDFPTGG I+  R  +   Y  GR    VR+   ++
Sbjct: 181 CRAVVKVIEEPTVPIEELLQIIPGPDFPTGG-IICGRSGVRRGYLTGRSTILVRSHTTID 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-RIVLFPKNR 318
            V  G   IV+ +IPYQ  + R+ E+IA      RI  +  +R+ES       ++    R
Sbjct: 240 NVK-GRNRIVIHDIPYQQTRDRVEERIAAAANEGRIVGISGVRNESDLKEPVRLVLELKR 298

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             DPD+++  +F  + ++  F + M  L     P+ + +  ++ E++ HR  V+ RR+ F
Sbjct: 299 DADPDIVLNQLFQFTPIQDTFSIIMLALVD-GKPRTLTIRDLIDEFIRHRVIVIRRRTQF 357

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL--------------- 423
            +    +R   ++GLL+A  +IDEII IIR+             +               
Sbjct: 358 LLSRARQRKHTVEGLLLALADIDEIIRIIRSSSTQAEAKTRLMGIESPASMLARALGEEG 417

Query: 424 ----------------TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                           T  Q DAIL + L  L  LE+ ++  E   LLAE  +   +L+ 
Sbjct: 418 FELFQQERGVADVYTLTGVQADAILRMTLGQLVNLEQERLSGEHAQLLAEIREYLRILSD 477

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            +     I  ++ E++  F       +RRT              + +IE+E + V IS+ 
Sbjct: 478 ERNIREIIRDQMLEIEAKFGD-----KRRTEI--SLEELGYIDLEDLIEEETMVVSISHS 530

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +     +     ++ D ++    A T   +L  +T GK Y     +
Sbjct: 531 GYIKRTPATTYKAQRRGGKGIKGAKSEDADPIQHLFVASTHAYLLFFTTKGKVYWQKVYD 590

Query: 580 LLS--GRGHGEAIQLLIDLNHNQDIV---TAFVYD-STCKLLVVSSKGNAFIVEESEIIA 633
           L        G AI  L+ L   + I        +D     L++ + KG     +      
Sbjct: 591 LPQLSRESRGRAIVNLLQLEEGERIADCRAVRDFDVEDHYLVMATRKGLVKKTKLEAYSR 650

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +KG   +K+  ++++  VV    GD + +       + F       M R   GV+   
Sbjct: 651 PMKKGIIAIKLREDDELVDVVVTQPGDELVLSTSKGMAIRFCESDARPMGRNSSGVKGIK 710

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSE---------------------------- 723
                    +     +    +      + +                              
Sbjct: 711 LDADDELVGMVVADPD-AQLLTVCEHGHGKRTYFGPNQTRADNAPPSDESANEDDSAAEE 769

Query: 724 ----------NDLL------GWLGKRGGVGSLVPKGFPRSGKFLS 752
                     +D            +RGG G    K   R+G+ +S
Sbjct: 770 EPVVEDEASGDDDELSSGAKYRTQRRGGKGLRDIKTTARNGRVVS 814



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/467 (11%), Positives = 130/467 (27%), Gaps = 65/467 (13%)

Query: 293 KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           ++   + D+   +      +L      L            + +       + +LS  R  
Sbjct: 422 QQERGVADVYTLTGVQADAILRMTLGQLVNLEQERLSGEHAQLLAEIREYLRILSDERNI 481

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAID-RRVEILKGLLIAYLNIDEIIAIIRNED 411
           + +  D +L+       +     S   +  ID   +   + ++++  +   I        
Sbjct: 482 REIIRDQMLEIEAKFGDKRRTEISLEELGYIDLEDLIEEETMVVSISHSGYIKR--TPAT 539

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             K        +   + +    ++   +     Y +       +  ++  D    S + +
Sbjct: 540 TYKAQRRGGKGIKGAKSEDADPIQHLFVASTHAYLLFFTTKGKVYWQKVYDLPQLSRESR 599

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I   ++          + G R     +        ++   +       ++       
Sbjct: 600 GRAIVNLLQ---------LEEGER---IADCRAVRDFDVEDHYLVMATRKGLVKKTKLEA 647

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
             +     + A+  +E D L   +     D ++L ++ G A      +     G   +  
Sbjct: 648 YSRPMKKGIIAIKLREDDELVDVVVTQPGDELVLSTSKGMAIRF-CESDARPMGRNSSGV 706

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV------------------------- 626
             I L+ + ++V   V D   +LL V   G+                             
Sbjct: 707 KGIKLDADDELVGMVVADPDAQLLTVCEHGHGKRTYFGPNQTRADNAPPSDESANEDDSA 766

Query: 627 -------------------EESEIIANTRKGKTFLKVSS---EEKMKLVVKVTG-DHVAV 663
                                ++     R GK    + +     ++  +V+V   D V +
Sbjct: 767 AEEEPVVEDEASGDDDELSSGAKYRTQRRGGKGLRDIKTTARNGRVVSIVRVDDEDEVLM 826

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           +    K+   S  +I  + R  +GVR+ S         +     +  
Sbjct: 827 MTARGKIQRVSAAEISIVGRNTQGVRIMSLDKDDSLAAVVRVPKDDS 873


>gi|162447246|ref|YP_001620378.1| DNA topoisomerase IV subunit A [Acholeplasma laidlawii PG-8A]
 gi|161985353|gb|ABX81002.1| DNA topoisomerase IV, subunit A [Acholeplasma laidlawii PG-8A]
          Length = 857

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 228/750 (30%), Positives = 387/750 (51%), Gaps = 23/750 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  +EE ++ V L   +  R+  Y+   I++RA+PD RDG KPV RRI++AM +MGL F 
Sbjct: 9   DKFIEEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFN 68

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            ++KKSARI GEV+GK HPHGD S+Y+++VR++Q F  R PL+   GN G+IDGDSAAA 
Sbjct: 69  KSYKKSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDGDSAAAM 128

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++ AE +L+ +D+  V+F   +++E+ EP V P++FPNLL NG  GI+ G AT
Sbjct: 129 RYTEARLSKEAEFLLKDIDKRTVNFVPNFDDEEQEPTVLPARFPNLLVNGAMGISAGYAT 188

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ +A +ALIDNP I+ +++L+YI GPDFPTGG IV+ +  I E+   G G 
Sbjct: 189 KIPPHNLNEVIDATIALIDNPNITNDEILKYIKGPDFPTGG-IVQGKAGIKEALTTGSGK 247

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  VEE+ +    IV+TEIPY+V K+ L+ +I  L I   I  + +IRDE+ ++ 
Sbjct: 248 IIIRAKMNVEEMSKSQDRIVITEIPYEVNKADLVRQIDNLRINNNIEDILEIRDETDQEG 307

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     +  D   +   +   SD++  +  NM  +   R P +     +LK +L H++
Sbjct: 308 LRIAIDLKKGADAQFIQNYLLKSSDLQVNYNYNMVAILKHR-PVLSGAFELLKVYLEHQK 366

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           EV+  RS++ ++   +R  I+ GL+     + E+I  IR        K  +  RF  +E 
Sbjct: 367 EVVTNRSNYELERATKRNHIVDGLIQMTSVVSEVIEEIRKSKNKADSKENIQKRFGFSEL 426

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AI+ L+L  L   +   +  E D L  E  +++ +L++ +     I  E++EV+ + 
Sbjct: 427 QAEAIVMLQLYRLSTTDIQALLDEKDTLYKEITRLEQILSNERILLKTIKSELQEVQTLL 486

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                    R T  E         ++ +I  E   V I+  G+++     SV  S     
Sbjct: 487 PSP------RRTELEAEIETIKIDEKDLISDEQTYVAITKDGYVKRASLRSVVASKEVGL 540

Query: 547 EGDSLK-IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           + +         +T D +LL +  G+   LP   +   +       I  ++  +  + I+
Sbjct: 541 KENDAMLYEEELNTLDTLLLFTNLGQYIYLPVYKIEEQKWRDLGVYINNIVPTSKGETII 600

Query: 604 TAFVYDS---TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                       K+L+ + +G    V  ++  ++   +    +K+S ++++  V     D
Sbjct: 601 RVLKVSDFSIDQKILLTTKQGQMKQVNLADFEVSRYNRPLRAMKLSKDDELVSVDYNQLD 660

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           ++  + ++  +L F  +++P       GV+  +  +G     + F   E   +     R 
Sbjct: 661 NIVAISKHGYVLRFDTEELPVYGLTAGGVKSMALAEGDEV-AVAFYAKESDDFYFLTSRG 719

Query: 719 YNRSENDLLGWLGKRGGVGSLV---PKGFP 745
           +   +  L      R   G ++    K  P
Sbjct: 720 HIIKDTVLELPKYARNRRGIILVDRIKTSP 749


>gi|170078543|ref|YP_001735181.1| DNA topoisomerase chain A [Synechococcus sp. PCC 7002]
 gi|169886212|gb|ACA99925.1| DNA topoisomerase chain A [Synechococcus sp. PCC 7002]
          Length = 845

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 232/783 (29%), Positives = 384/783 (49%), Gaps = 41/783 (5%)

Query: 6   ISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++    L++  ++   +L   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E+
Sbjct: 8   MAQQLDLLQSGHIIPTALHVEMEQSYMEYAMSVIVGRALPDVRDGLKPVHRRILYAMYEL 67

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL     ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG+ID D
Sbjct: 68  GLSPDRPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQDFSTRYPLLAGHGNFGSIDND 127

Query: 125 SAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE R++ V+ E +L  + ED VDF D ++    EPVV P + P LL NG+SGI
Sbjct: 128 PPAAMRYTETRLSPVSFEAMLAQISEDIVDFTDNFDGSQQEPVVLPVQLPILLLNGSSGI 187

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT++P HN+ E+ +  +ALID+PEI  EKL   I  PDFPTGG IV     + ++Y
Sbjct: 188 AVGMATNMPPHNLGEVVDGLIALIDDPEIEDEKLWAVIPAPDFPTGGEIV-DLAGVRDAY 246

Query: 244 RLGRGGFRVRARWCV------EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
           R GRG   +R    +       +  R    +VVTE+PYQV K+  IEKIA+L+   +I  
Sbjct: 247 RTGRGIIPMRGIVHLEVLQVGRKRKRDVNALVVTELPYQVNKAAWIEKIADLVNDGKISG 306

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + DIRDES      V+    R  +P+ +++ ++  + +++ F   +  L     P+ + L
Sbjct: 307 ISDIRDESDRQGMRVVIELKRDAEPEKVLKLLYKKTALQSNFGAILLSLV-NNQPRQLSL 365

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL+E+L  R E + R+  + ++  + R   ++GLL+A  N+D +I I+RN        
Sbjct: 366 KAILQEFLEFREETVTRQYRYELEQKETRQHSVEGLLLALNNLDAVIEILRNAADGTTAK 425

Query: 418 VSR---FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                    +E+Q DAIL + +R L  LE  +++ E   L  E  K++ LL+   +    
Sbjct: 426 QQFQAALGFSESQSDAILAMPMRRLTGLERQKLEQESTELATEIAKLNKLLSDRHELLKA 485

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP--------------- 519
           +  E+R +K  F+             E                                 
Sbjct: 486 LKRELRSLKRKFADPRRTRLPDVPSPEPEPVTVEAEPDTPAATPKKKRQSRKKEEPVLAL 545

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              +  ++   I +              + +         T  ++++ +  GKA+ +   
Sbjct: 546 LPQLTETSHVAIAASGGVYWGNDDAGLLDEEPTIFKAQIGTQKKLIVCTDQGKAFPVAIA 605

Query: 579 NLLSGRGHGEAIQLLI----DLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEI 631
           +L       +   + +     L  +   +T F+         LL+++++G    +   E+
Sbjct: 606 DLPYQEQRDKPQLIDLLPDHALRDDHQPITQFLLPDNLAEYDLLLLTAQGRIKRLPAIEL 665

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGV 687
            + T +G + +K+  ++ +K    V  G+ VA+   + ++L   ++   IP M R  +G 
Sbjct: 666 ESFTSRGLSLIKLKDKDTLKFACFVKGGEQVAIAVSSGRVLHLPVNDHEIPVMGRTSQGN 725

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           +    +                 ++  +   Y +        LGKRG +G+ V +   ++
Sbjct: 726 QALRLRFNEQIVACVPCQRHNELYL-ISEEGYGKKLAASSLRLGKRGDMGNHVMRFESKT 784

Query: 748 GKF 750
              
Sbjct: 785 DLL 787


>gi|164430470|gb|ABY55552.1| GyrA [Shigella boydii]
          Length = 683

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 243/685 (35%), Positives = 360/685 (52%), Gaps = 45/685 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 1   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 180

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR GRG   +RAR 
Sbjct: 181 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARA 239

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 240 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 300 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------------- 415
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 359 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 418

Query: 416 -----------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                            V    + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 419 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F           +               +    
Sbjct: 479 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V         + +      SA   KE D +   L A+T D IL  S+ G+ Y++   
Sbjct: 539 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 598

Query: 579 NLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            L        G  I  L+ L  ++ I        ++   K+ + ++ G       +E   
Sbjct: 599 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 658

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG 658
               GK  +K+   +++  V   +G
Sbjct: 659 LRTAGKVAIKLVDGDELIGVDLTSG 683



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 58/175 (33%), Gaps = 17/175 (9%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  +   E      D+N    I           ++ +S +G       SE  A  R
Sbjct: 502 VREQFGDKRRTEITANSADINLEDLIT------QEDVVVTLSHQGYVKYQPLSEYEAQRR 555

Query: 637 --KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KG---VRL 689
             KGK+  ++  E+   +L+V  T DH+       ++    + Q+PE +RG +G   V L
Sbjct: 556 GGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNL 615

Query: 690 QSYKDGGISDVI--CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              +       I    +  EG+    +      +          +    G +  K
Sbjct: 616 LPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR--TAGKVAIK 668


>gi|125718047|ref|YP_001035180.1| DNA topoisomerase IV subunit A [Streptococcus sanguinis SK36]
 gi|125497964|gb|ABN44630.1| ParC, putative [Streptococcus sanguinis SK36]
          Length = 816

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 209/756 (27%), Positives = 389/756 (51%), Gaps = 27/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDSNTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                       V +  G    V+  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFVATKLGQIKRVDRKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGTKAAGVKAINLKKDDVLVAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
             +        +  R   G  V +    +  +  ++
Sbjct: 712 SLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFAA 747


>gi|37521619|ref|NP_924996.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
 gi|35212617|dbj|BAC89991.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
          Length = 825

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 244/764 (31%), Positives = 395/764 (51%), Gaps = 35/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +    +  V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ AM E+GL  
Sbjct: 8   TGPEPKARVVPTALHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILFAMHELGLAP 67

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              F+K AR+VG+V+GK HPHGD +VYD+LVRL Q F  RYPL+SG GNFG+ID D  AA
Sbjct: 68  DRPFRKCARVVGDVLGKYHPHGDTAVYDALVRLVQDFSSRYPLLSGHGNFGSIDNDPPAA 127

Query: 129 YRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            RYTE R+  V  + +L  +D+  V+F D ++    EP V P++ P LL NG++GIAVGM
Sbjct: 128 MRYTECRLAAVGVDALLAEIDDQTVEFTDNFDGSQREPEVLPARLPVLLLNGSAGIAVGM 187

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ +  +ALIDNPE++ E+LL  I GPDFPTGG I+   E I E+Y  GR
Sbjct: 188 ATNIPPHNLGELVDGLVALIDNPELADEQLLRIIPGPDFPTGGQII-GTEGIREAYLTGR 246

Query: 248 GGFRVRARWCVEEVGRGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           G   +R     EEVG G      I+VT +PYQV K+  IEK+AEL+   ++  + D+RDE
Sbjct: 247 GSITMRGITHCEEVGSGRRRKPAIIVTALPYQVNKAAWIEKVAELVNLGKVNGISDLRDE 306

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   V+    R   P+ ++  ++ L+ ++  F   +  L  G  P+++ L  +L+++
Sbjct: 307 SNREGVRVVLEMKREARPEAILAGLYRLTPLQANFGTILLTLV-GGQPRLLKLRELLEQF 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421
           L  R   L RR  + ++    R   L+G L+A  N+  I+ ++                +
Sbjct: 366 LEFRVATLTRRIQYNLRRASERAHQLEGQLVALANLQPIVQMLSAARDAAQARAELEASY 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q + IL + LR L +L+  ++ SE   L  +  ++ S L+S ++    +  E+R+
Sbjct: 426 GLSERQSEEILQMPLRRLTQLDRERLASEHRELREKVIELQSQLDSRRKLLGLLKRELRD 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-- 539
           +K+  +        R T  E   A   TL + +   + + V +++RG++R + + + +  
Sbjct: 486 LKKKHADP------RRTCIEARTAPLPTLAE-ITSDDEVVVQLTHRGYVRRIPAAAFERR 538

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                +    ++ D +  +    T + +L+++  G+AY+L    +           L+  
Sbjct: 539 SRSRRAVSRTEDNDFVVESYPTRTRNELLVITRSGRAYSLKVSEIPETGPRSRGTPLVTL 598

Query: 596 LNHN-QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           L+   + I   FV   Y     L++++ +G    +  SE    T +G   LK+S E+++ 
Sbjct: 599 LSIQGEQIAATFVRENYPPDLFLVLLTREGRIKKLLLSECANLTGRGLMMLKLSEEDQLI 658

Query: 652 LVVKVT-GDHVAVVGENRKLLIF--SIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            V   T    + V     +LL F     Q+P M R   G++    + G     +   +  
Sbjct: 659 QVGLATAHSQIVVGTSAGRLLRFVADEAQLPAMGRSALGLQAIKLRRGESLAAMTV-VGN 717

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF--PRSGK 749
           G   +  +     +        L +R G+G   P G    R+G 
Sbjct: 718 GEDLLMVSRLGLGKRLKTGEIRLQERAGLG--TPVGLLRERNGD 759


>gi|167044924|gb|ABZ09590.1| putative DNA gyrase/topoisomerase IV, subunit A [uncultured marine
           microorganism HF4000_APKG8D23]
          Length = 898

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 225/811 (27%), Positives = 355/811 (43%), Gaps = 85/811 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+    +   +EE Y+ YA+S I  RA+PD+RDG KPVHRRI+  M + G      +
Sbjct: 1   MAENLLRRDISDEMEESYINYAMSVIIGRALPDVRDGLKPVHRRILWGMHQAGHTHDKGY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR VGEV+GK HPHGDQ++YD++VR+AQ F  RYPLI GQGNFG+IDGD  AA RYT
Sbjct: 61  SKSARSVGEVMGKYHPHGDQALYDTMVRMAQDFSLRYPLIDGQGNFGSIDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ ++++ +L  +++D +D    +++ ++EP V P++ PNLL NG+ GIAVGMAT IP
Sbjct: 121 ESRLDRLSQHMLDDINKDTIDMEPNFDDTETEPTVLPARLPNLLLNGSDGIAVGMATKIP 180

Query: 193 SHNVQEICEAALA-------------LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            HN+ E+  A                L + P+I   + +EY+ GPDFPTG   +   + I
Sbjct: 181 PHNLNEVAAAIKFHVEKVVEQNRKIGLDNPPKIDASEYMEYLKGPDFPTGA-TIHGVDGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           ++ YR G G F++R+   V+E  RG   +VV  IPYQV+K+ +++ IAEL+    I  + 
Sbjct: 240 LDMYRTGNGRFQIRSDVEVQEDSRG-KRLVVHSIPYQVKKAGMLQGIAELVRKDIIKGIR 298

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES+++   V+    ++ DP  ++  ++  S ++  +     +  +   P  + L  
Sbjct: 299 DIRDESSKEGIRVVIEIKQNADPHAVLNQLYQSSRLQESYSA-NMMGILNGEPVQLDLRT 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL  ++ HR  V+ RR+ F     + R  IL GLL A   + EII + R+ D        
Sbjct: 358 ILHTYVRHRESVVERRTQFEFDKAEARAHILHGLLRAQKRMGEIIEVGRSSDSRDQFEQY 417

Query: 420 -----------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                      RF  ++ Q  AI   RL  L KL   ++  EL  L    +   ++L S 
Sbjct: 418 LRGDEKYPKIRRFDFSDKQAKAIAERRLYQLTKLNVQEVADELKKLKGAIKDYQNILGSR 477

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            ++ N I  E+ EV +                       A     +       +      
Sbjct: 478 IRRLNIIISELDEVVDRHGDERRSRIDPMPLSMDREDLVAEQAIVISLTRDNYIRHLPVE 537

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
             R        L  +  KE D+    +   + DR+L+ +  G+ Y L A    S   +G 
Sbjct: 538 SFRLQNRGGKGLKGVVTKEEDAPSKIVTCFSKDRLLIFTDMGRVYGLRAWETPSASRYGR 597

Query: 589 AIQLLIDL---NHNQDIVTAFVY-------DSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
              +   L     ++ +++                L+  ++ G       SE +   R G
Sbjct: 598 GSHIRNLLTRIRDDEKVISILPMSRSLIENPEGHYLMFATANGRIKKSRLSEYVKINRNG 657

Query: 639 KTFLKVSSEEK--MKLVVKVTG-DHVAVVGENRKLLIFSIDQ-----------------I 678
           K  L+ +  E+  +  V   T  DHV +V  +     F   Q                 +
Sbjct: 658 KYALRFAGGEEDALVSVRPATDADHVVLVSSHGNACRFMPAQKKSRVDSNSGETITTHVV 717

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND------------ 725
               R  +GV     + G     +        + +  +     +                
Sbjct: 718 RVQGRVSQGVSGMKLRKGDQVIGMIVTDDFDTSVLTISRYGMAKRSRLGSGEMKPVLDDD 777

Query: 726 ---------------LLGWLGKRGGVGSLVP 741
                                 RG  G    
Sbjct: 778 SMPVLDEDGGLVQQRDGYRRTNRGTRGVRTM 808



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 80/313 (25%), Gaps = 51/313 (16%)

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
            ++   S   + + I   +  +++     + L   R+                M      
Sbjct: 587 WETPSASRYGRGSHIRNLLTRIRDDEKVISILPMSRSLIENPEGHY------LMFATANG 640

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            +  S       +  +          E D+L     A   D ++L+S+ G A        
Sbjct: 641 RIKKSRLSEYVKINRNGKYALRFAGGEEDALVSVRPATDADHVVLVSSHGNACRFMPAQK 700

Query: 581 LSGRGHGEAIQ----------------LLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNA 623
            S                           + L     ++   V D     +L +S  G A
Sbjct: 701 KSRVDSNSGETITTHVVRVQGRVSQGVSGMKLRKGDQVIGMIVTDDFDTSVLTISRYGMA 760

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
                         G   +K   ++    V+   G    V   +              +R
Sbjct: 761 KRSRL---------GSGEMKPVLDDDSMPVLDEDGG--LVQQRDGY---------RRTNR 800

Query: 684 G-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS-----ENDLLGWLGKRGGVG 737
           G +GVR  S +DG     +              G             + LG + K G   
Sbjct: 801 GTRGVRTMSLRDGDHIVSVRQVPDLDDQLFMLTGTGMMIRMVSGQTKETLGKVTK-GTR- 858

Query: 738 SLVPKGFPRSGKF 750
            +  +   R+G  
Sbjct: 859 IMELRNADRTGYV 871


>gi|73916926|gb|AAZ93331.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 213/747 (28%), Positives = 389/747 (52%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y++  I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSMYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+ EIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|73916830|gb|AAZ93283.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916878|gb|AAZ93307.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916882|gb|AAZ93309.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916912|gb|AAZ93324.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916916|gb|AAZ93326.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916920|gb|AAZ93328.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916922|gb|AAZ93329.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 214/747 (28%), Positives = 390/747 (52%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|238028238|ref|YP_002912469.1| DNA topoisomerase IV subunit A [Burkholderia glumae BGR1]
 gi|237877432|gb|ACR29765.1| DNA topoisomerase IV, A subunit [Burkholderia glumae BGR1]
          Length = 774

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 293/747 (39%), Positives = 428/747 (57%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E  YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 22  LTLGHYAESAYLGYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLGNNAKPVKSARVV 81

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 82  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 141

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +D+  VDF   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++EI
Sbjct: 142 AQLLLDEIDQGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREI 201

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI NP+++  +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 202 AAAAVALIRNPKLTHAELMQIVPGPDFPGGGQIISSDAEIAAAYETGRGSLKVRARWKIE 261

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------------------AKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 262 DLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKIKAGKKTLSPEQVNTKKTMLDLLDAV 321

Query: 302 RDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES     VR+V  PK+RSLD    ++S+   + +E+  PLN+ ++     P    L  
Sbjct: 322 RDESGKDAPVRLVFEPKSRSLDQAEFVQSLLAHTSLESNAPLNLVMIGNDGRPAQKGLGT 381

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  L RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 382 ILGEWVRFRQLTLTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALMS 441

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 442 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 501

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 502 EGDAKQYGD-----DRRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 552

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ +++P   L  GRG G  +  LI+L   
Sbjct: 553 PASFTFKAGDGLYAAFQCRTPDVLIAWGSKGRVHSVPVQVLPGGRGDGVPVTSLIELESG 612

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
             ++  F  ++  +LL+ SS G  FI +  ++++  + GK F+ +    +    + V   
Sbjct: 613 THLMHYFAANAEQQLLLASSNGFGFIAKLGDMVSRVKAGKAFMTIDEGAEPLAPMPVMPL 672

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +S  G+GV L +  +   +      I      +  AG
Sbjct: 673 ATQVACLSGQGRLLVFGLDEMKTLSAGGRGVILMAL-EDKETLAQALAIDGRGVVLLGAG 731

Query: 717 RSYNRSE-----NDLLGWLGKRGGVGS 738
           R     E       L  +LGKR   G 
Sbjct: 732 RGGKAQEVTLAGAALAPYLGKRARKGR 758


>gi|302878549|ref|YP_003847113.1| DNA topoisomerase IV, A subunit [Gallionella capsiferriformans
           ES-2]
 gi|302581338|gb|ADL55349.1| DNA topoisomerase IV, A subunit [Gallionella capsiferriformans
           ES-2]
          Length = 798

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 272/754 (36%), Positives = 416/754 (55%), Gaps = 45/754 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V L    E  YL YA+S +K RA+PD+ DG KPV RRI++AM EMGL   + F KSAR+V
Sbjct: 44  VPLAQYAERAYLEYAVSVVKGRALPDVCDGQKPVQRRILYAMREMGLTHNSTFVKSARVV 103

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD S YD++VRLAQ F  RYPL+ GQGNFG+ DGD++AA RYTEAR+T +
Sbjct: 104 GEVLGKFHPHGDSSAYDAMVRLAQNFSLRYPLVDGQGNFGSRDGDNSAAMRYTEARLTPI 163

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A ++L  +D   VD    Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++EI
Sbjct: 164 AAVLLSELDMGTVDLIPNYDGHFQEPAMLPARLPMVLLNGASGIAVGMATEIPSHNLREI 223

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA   + NP+ S E++L  I GPD P+G  I+ S   I E YR GRG  ++RARW VE
Sbjct: 224 GGAAALCVRNPDCSDEEILSGITGPDLPSGAQIISSPAEIRECYRTGRGSLKMRARWSVE 283

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--------------- 304
           E+ RG W + V E+P+ V   +++E+I EL   K     + +  E               
Sbjct: 284 ELARGQWRVAVFELPHGVSSKKIMEEIEELTNPKFRLGKKTLTTEQIHNKQLILSVLDKV 343

Query: 305 -----SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
                  + VR+V  PK+     + LM  +   + +E    +NM ++ +   P+   +  
Sbjct: 344 ADESDKDQAVRLVFEPKSGRQSVEELMAILLAHTSLECGLSINMVMIGIDGRPKQKAITD 403

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           I++EW   R   + RR ++R+  I+ R+ +L+G +  +LN+DE+I IIR  D PK  +++
Sbjct: 404 IIREWAQFRLATVHRRCTYRLSQINDRIHVLEGRMTVFLNLDEVIRIIRESDDPKVALIA 463

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L++ Q + IL +RLR L ++E  +I+ EL  L  E   ++ +L S      ++A EI
Sbjct: 464 RFELSDRQAEDILEIRLRQLARMEGIKIERELKGLQEEGADLNKMLASESLLRRRVAREI 523

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E  + +        RRT   +     +     A +  EP+TV+IS + W R+   H +D
Sbjct: 524 DEDIKAYGD-----DRRTLIEQ----AERVSLTATVVDEPVTVLISQKYWGRTRIGHGLD 574

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           LSA+ FKEGDSL  A    +TD+ +++S++G+  ++P   L  GRG G  +  L++L   
Sbjct: 575 LSAVAFKEGDSLLAAFECRSTDQCIVISSNGRVCSIPVSVLPGGRGDGVPLTTLVELAAG 634

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV----VK 655
             IV  F   +   +L+ +S    F+ + S++I   + GK F+ +   +++ L       
Sbjct: 635 AKIVRVFCGAAEQNVLLATSASYGFVCQLSDMIGRNKAGKQFITI-EGDELILPPVLYTP 693

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEGLTW 711
                V  V  + +LL F+   +PEM R    G+G+ +   ++G +   +       +T 
Sbjct: 694 SEQAQVISVSRSGRLLSFA---LPEMKRLSSGGRGLIVMGLEEGDVLASLMVAEKSKITV 750

Query: 712 IDSA----GRSYNRSENDLLGWLGKRGGVGSLVP 741
           I        ++   SE +LL   GKR  +G ++P
Sbjct: 751 ISQTASGREQAIRLSEAELLTHFGKRARMGRMLP 784


>gi|326560568|gb|EGE10949.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 103P14B1]
 gi|326562212|gb|EGE12540.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 7169]
 gi|326572002|gb|EGE22004.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC8]
 gi|326573949|gb|EGE23899.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis O35E]
 gi|326576270|gb|EGE26185.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis CO72]
          Length = 745

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 268/742 (36%), Positives = 437/742 (58%), Gaps = 15/742 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   S+    E  YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   A  KKS
Sbjct: 4   QIDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G+ D   S AA RYTEA
Sbjct: 64  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
            M++ A+++L  +++  VD++D ++   SEPV  P++ PN+L NGT+GIAVGMAT IP H
Sbjct: 124 NMSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ NPE+S ++L++ +  PD PT   I+  +  ++  Y  G+G +++RA
Sbjct: 184 NLHEVVKACIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIV 312
            +      + +  +++  +PYQV  ++++E+IA+L++ K++P + +IRDES      RIV
Sbjct: 244 TYH--TDPKQNHLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K   L+ D +M  +F  +D+ET + +NMN++ +   P+V  L  IL EWL+ R+ V+
Sbjct: 302 IELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR  +R+  I+ R+ IL GLLIAYLNIDEII IIR  + PK  +++RF LT+ Q +AIL
Sbjct: 362 IRRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAIL 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++LR L KLEE ++ +E D L AE+  I   LN+ +     +  E+    +    +   
Sbjct: 422 DIKLRQLAKLEEIELTAEHDRLEAERLLISEQLNNPEMLTKLLIDELTADAKTHGDA--- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RR+   + + +        +   EPIT ++S  GWIR+ K H  D + ++++ GD+  
Sbjct: 479 --RRSPVVQRAESSSLKAVDLI-ASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYL 535

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                 +T+R++L+   G++Y L + +L S R  G+ I  L++L     I     Y+ T 
Sbjct: 536 THALGKSTERLILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTN 595

Query: 613 ---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG-ENR 668
               +L+ SS G  FI + + +    + GK+ + ++    + +VV    D +  V   N 
Sbjct: 596 GSPNVLMASSLGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNG 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            LLIF+ D++P++++GKG +L + K G     I          I +  R+   + ND+  
Sbjct: 656 NLLIFASDELPKLAKGKGNKLANLKAGETITAITALSDTDALVITAGKRTLTLNPNDIAN 715

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
           ++  R   G+ +PKGF +    
Sbjct: 716 YIAHRANRGNPLPKGFGKVSNM 737


>gi|315222938|ref|ZP_07864817.1| DNA topoisomerase IV, A subunit [Streptococcus anginosus F0211]
 gi|315187888|gb|EFU21624.1| DNA topoisomerase IV, A subunit [Streptococcus anginosus F0211]
          Length = 818

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 209/744 (28%), Positives = 383/744 (51%), Gaps = 26/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+  ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPKAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F     
Sbjct: 420 VTLQLYRLTNTDVVILEEEQAELREKIAMLSAIIGDERTMYNLMKRELREVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+++     S +   +  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRGGYLKRTSPRSFNSSTVDEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT  +L+ +  G     P   L   R       L   + + +        
Sbjct: 534 DRLIFISSAKTTQHLLIFTNLGNVIYRPVHELADIRWKEIGEHLSQTITNFETNEEVIYT 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
           +            V+  G    VE  +         K   F K+   ++++  +  +  D
Sbjct: 594 ELVDNFDEGTYFAVTKLGQIKRVERKQFSPWRTYKSKSVKFAKLKNEDDQIITLSPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         +    +    R 
Sbjct: 654 DVMLVTQNGYALRFNIEEVPVVGAKAAGVKAINLKKDDVLAAAFIVNTDSFYIL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +        +  R   G  V +
Sbjct: 712 ALKRMAVADIPVTSRANRGLQVLR 735


>gi|221199540|ref|ZP_03572584.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2M]
 gi|221205560|ref|ZP_03578575.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2]
 gi|221174398|gb|EEE06830.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2]
 gi|221180825|gb|EEE13228.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2M]
          Length = 773

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 290/765 (37%), Positives = 431/765 (56%), Gaps = 39/765 (5%)

Query: 3   VDNISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN S+     +     A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM
Sbjct: 2   DDNTSDLFAGSDSPEADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG S
Sbjct: 122 DGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGAS 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+AT IPSHN++E+  AA+ALI NP+++ E+L+  I GPDFP GG I+ S   I  
Sbjct: 182 GIAVGLATEIPSHNLREVAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIAS 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---------- 291
           +Y  GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL            
Sbjct: 242 AYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTL 301

Query: 292 --------AKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + LL+ +RDES ++  VR+V  PK+R++D    + S+   + +E+   L
Sbjct: 302 TPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATL 361

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P    L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LN+D
Sbjct: 362 NLVMIGADGRPGQKGLLTILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLD 421

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D+PK  ++S F LT+ Q + IL +RLR L +LE+ +I+ EL++L  EK K+
Sbjct: 422 EVIRIIRESDEPKAALMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKELESLRDEKAKL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL +       +  EI    + +        RRT   +  RA      +A +  EP+T
Sbjct: 482 EELLANDSAMKRLMIKEIEADAKQYGD-----DRRTLIQQEKRATF----EAKVVDEPVT 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV+S +GW+R+LK H +D +   FK GDSL  A    T DR++   + G+ Y++    L 
Sbjct: 533 VVVSQKGWVRALKGHGLDPAGFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLP 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG G  +  LI+L     ++  +   +   LL+ SS G  FI +  ++++  + GK+F
Sbjct: 593 GGRGDGVPVTSLIELESGSHLMHYYAASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSF 652

Query: 642 LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGIS 698
           + +         + V      VA +    +LL+F ID++  +   G+GV L +  D   +
Sbjct: 653 MTIDPGAVPLAPMPVLPNATQVACLSSGGRLLVFGIDEMKTLSGGGRGVTLMAL-DDKET 711

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
            V    I      +   GR     +  L        +GKR   G 
Sbjct: 712 LVQALAIDPAGVVLIGTGRGGKVQDETLSYAGLAPHIGKRARKGR 756


>gi|73542042|ref|YP_296562.1| DNA topoisomerase IV subunit A [Ralstonia eutropha JMP134]
 gi|72119455|gb|AAZ61718.1| DNA topoisomerase IV subunit A [Ralstonia eutropha JMP134]
          Length = 780

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 277/759 (36%), Positives = 420/759 (55%), Gaps = 33/759 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +     EE   +++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL 
Sbjct: 5   DITFQPEEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLR 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
             A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AA
Sbjct: 65  ADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T ++ L+L  +D+  VDF   Y+    EP + P++ P +L NG SGIAVGM
Sbjct: 125 AMRYTEARLTPISRLLLDEIDQGTVDFIANYDGSMEEPKLLPARMPFVLLNGASGIAVGM 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT +P HN++E+  A +A+I NP I++ +LL  + GPD+P GG I+     I + Y  GR
Sbjct: 185 ATEVPPHNLREVAGATVAMIRNPNITLAELLALMPGPDYPGGGQIISPAADIAQIYESGR 244

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---------- 297
           G  +VRARW +EE+ RG W +VVTE+P      +++E+I EL   K              
Sbjct: 245 GSLKVRARWTIEEMARGQWQLVVTELPPATSAQKVLEEIEELTNPKVKAGKKALTPEQQQ 304

Query: 298 --------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
                   L+ +RDES     VR+V  PK+++++    ++++   + +E+  P+N+ ++ 
Sbjct: 305 LKASVLAVLDAVRDESGKDAPVRLVFEPKSKNIEQQEFIQTLLAHTSLESGAPVNLVMIG 364

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
               P+   L  IL+EW+  R   + RR+ +R+  ++ R+ IL+G ++  LNIDE+I II
Sbjct: 365 TDGRPRQKGLRDILREWIDFRFATVTRRTRYRLGKVEDRIHILEGRMLVLLNIDEVIRII 424

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R  D+PKP ++ RF L++ Q + IL +RLR L +LE  +I+ EL +L  E+  +D LL S
Sbjct: 425 RESDEPKPALMERFGLSDRQAEDILEIRLRQLARLEAIRIEKELKDLREEQADLDVLLKS 484

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                 +I  EI    + +S   D   RRT   E  RA      +  +  EP+TVV+S +
Sbjct: 485 DTMMRRRIIKEIETDAKQYS-PEDKDPRRTLIQEERRAAA----EVRVVDEPVTVVVSQK 539

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           GW+R+ + H  D     FK GD+L       T D +L   T+G+ Y++P  +L  GRG G
Sbjct: 540 GWVRTRQGHGHDAQQFTFKAGDALYDTFECRTIDVLLAFGTNGRVYSVPVASLPGGRGDG 599

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             +  LI+L     I   F   +  ++L+ +  GN F+ + +++    + GK+FL +   
Sbjct: 600 VPLTTLIELQPGSQIAHTFAGSAEQRMLIATQGGNGFLTKIADMTGRQKGGKSFLTLDDG 659

Query: 648 EKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFK 704
           +       +  +  HVA +  N +LL+ ++D++  +S  G+GV L   +           
Sbjct: 660 DAPLTPAPIASEATHVACLSGNGRLLLVALDEVKVLSAGGRGVILMELEPKEKLLQAVGV 719

Query: 705 ICEGLTWIDSAGRSYNRSENDLL-----GWLGKRGGVGS 738
              GL    +  R        L       ++GKR   G 
Sbjct: 720 GAPGLVVSGTTPRGGKPDTQKLAGANLMPYVGKRARKGK 758


>gi|326567166|gb|EGE17288.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC1]
          Length = 745

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 268/742 (36%), Positives = 437/742 (58%), Gaps = 15/742 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   S+    E  YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   A  KKS
Sbjct: 4   QIDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G+ D   S AA RYTEA
Sbjct: 64  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
            M++ A+++L  +++  VD++D ++   SEPV  P++ PN+L NGT+GIAVGMAT IP H
Sbjct: 124 NMSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ NPE+S ++L++ +  PD PT   I+  +  ++  Y  G+G +++RA
Sbjct: 184 NLHEVVKACIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIV 312
            +      + +  +++  +PYQV  ++++E+IA+L++ K++P + +IRDES      RIV
Sbjct: 244 TYH--TDPKQNHLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K   L+ D +M  +F  +D+ET + +NMN++ +   P+V  L  IL EWL+ R+ V+
Sbjct: 302 IELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR  +R+  I+ R+ IL GLLIAYLNIDEII IIR  + PK  +++RF LT+ Q +AIL
Sbjct: 362 IRRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAIL 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++LR L KLEE ++ +E D L AE+  I   LN+ +     +  E+    +    +   
Sbjct: 422 DIKLRQLAKLEEIELTAEHDRLEAERLLISEQLNNPEMLTKLLIDELIADAKTHGDA--- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RR+   + + +        +   EPIT ++S  GWIR+ K H  D + ++++ GD+  
Sbjct: 479 --RRSPVVQRAESSSLKAVDLI-ASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYL 535

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                 +T+R++L+   G++Y L + +L S R  G+ I  L++L     I     Y+ T 
Sbjct: 536 THALGKSTERLILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTN 595

Query: 613 ---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG-ENR 668
               +L+ SS G  FI + + +    + GK+ + ++    + +VV    D +  V   N 
Sbjct: 596 GSPNVLMASSLGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNG 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            LLIF+ D++P++++GKG +L + K G     I          I +  R+   + ND+  
Sbjct: 656 NLLIFASDELPKLAKGKGNKLANLKAGETITAITALSDTDALVITAGKRTLTLNPNDIAN 715

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
           ++  R   G+ +PKGF +    
Sbjct: 716 YIAHRANRGNPLPKGFGKVSNM 737


>gi|119489753|ref|ZP_01622511.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106]
 gi|119454327|gb|EAW35477.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106]
          Length = 855

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 236/789 (29%), Positives = 392/789 (49%), Gaps = 54/789 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++    L+   V A  L   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G
Sbjct: 1   MARQLNLLSGQVIATPLHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG++D D 
Sbjct: 61  LTPDRPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDP 120

Query: 126 AAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE R+  +    +L  V E  VDF   ++    EP V P++ P LL NG+SGIA
Sbjct: 121 PAAMRYTETRLASIGNEGLLTQVGEATVDFISNFDNSQQEPTVLPAQLPFLLLNGSSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++P HN+ E+ +  +ALIDN ++S E+L   I  PDFPTGG IV S + I E+Y 
Sbjct: 181 VGMATNVPPHNLGEVVDGLIALIDNSDLSDERLRSIIPAPDFPTGGEIV-STDGIAEAYT 239

Query: 245 LGRGGFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            GRG   +R    +E+V      R    IVVTE+P+QV K+  IEK A L+ A R+  + 
Sbjct: 240 QGRGSIVMRGVAKIEQVPTAQRRRTKTAIVVTELPFQVNKASWIEKTASLVNAGRLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES  D   V+    R   P +++  ++  +D+ ++F      L     P+ + L  
Sbjct: 300 DIRDESDRDGIRVVIELKREASPQVVLHHLYQQTDLMSKFGAIFLALVDS-QPRQLTLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-- 417
           IL+E+L  R + L R+ +  ++A  RR  I++GLL A  N+D +I I+RN          
Sbjct: 359 ILQEFLNFREQTLIRQYTHELEAALRRGHIVEGLLNALANLDAVIEILRNAPDGGTAKIS 418

Query: 418 -VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
             S   ++E Q DAIL + +R L  LE  +++ E + L  +  ++  L++   +    + 
Sbjct: 419 LESDLQMSEAQADAILAMPMRRLTGLERQKLQEEFEELSEQIRQLRRLIDDRSELMKSLK 478

Query: 477 CEIREVKEIFSKST----------------DLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
            E+R +K  +                        R            A LQ     +E  
Sbjct: 479 KELRSLKRQYGDPRRTRIIVQDPKAQPEQSSSRIRSGKPKSKGSQTTAILQPVAPAEEET 538

Query: 521 TVVISNRGWIRSLKSHSVDLSALH---------FKEGDSLKIALHAHTTDRILLLSTDGK 571
            +  ++RG++R L + + D  +               D    +   +T   + +++  GK
Sbjct: 539 FLEFTHRGYVRRLSAKTGDSKSRSKADKSEIIVEDSDDFNVGSYLTNTGQNLAIITRTGK 598

Query: 572 AYTLPAGNLLSGRGHGE----------AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           AY L  G++ +                ++     ++  + I+  F+   +     L++V+
Sbjct: 599 AYPLNVGDIPTTSNRSRGTPLITLLPSSVTKDPPMSLQELILAHFIVAQHSDKTDLILVT 658

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ 677
            +G    +  +E++  T +G T +K+  ++++        G+ + +     ++L   ++ 
Sbjct: 659 QQGKIKRLSLTELMDLTNRGITIIKLKDQDELGYASLTRPGEQMILATSGGRVLRLPVND 718

Query: 678 --IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             +P M R  +G ++   +      V C  +    + +  +   + +  +        RG
Sbjct: 719 EQLPPMGRTAQGSQVTRLRK-QERLVSCLTVPPKASLLLVSELGFAKRISLDRVRSTTRG 777

Query: 735 GVGSLVPKG 743
            +G+ + + 
Sbjct: 778 AIGTQLFQF 786



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 67/175 (38%), Gaps = 6/175 (3%)

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  ++ +  K+ D L  A      ++++L ++ G+   LP  +         A   
Sbjct: 672 MDLTNRGITIIKLKDQDELGYASLTRPGEQMILATSGGRVLRLPVNDEQLPPMGRTAQGS 731

Query: 593 LID-LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EE 648
            +  L   + +V+         LL+VS  G A  +    + + TR   G    +    ++
Sbjct: 732 QVTRLRKQERLVSCLTVPPKASLLLVSELGFAKRISLDRVRSTTRGAIGTQLFQFKGQKD 791

Query: 649 KMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVI 701
            +  +V V     A ++    +++ F++D++   +    G RL     G     +
Sbjct: 792 ALAGMVSVNSHQEAYLITSESRIVRFAVDEVKLQNEEATGNRLFKLNTGETIIGV 846


>gi|73916824|gb|AAZ93280.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916828|gb|AAZ93282.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916896|gb|AAZ93316.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 213/747 (28%), Positives = 388/747 (51%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|302023679|ref|ZP_07248890.1| DNA topoisomerase IV subunit A [Streptococcus suis 05HAS68]
 gi|330832704|ref|YP_004401529.1| topoisomerase IV subunit A [Streptococcus suis ST3]
 gi|329306927|gb|AEB81343.1| topoisomerase IV subunit A [Streptococcus suis ST3]
          Length = 817

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 214/757 (28%), Positives = 391/757 (51%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   +EKL+E++ GPDFPTG  I++  + I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGA-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RCEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  ++  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  
Sbjct: 301 ELKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNF-TPRQVGLQKILSSYIAHRREIIIA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L  + + + +++   +  +N +  E+REVK+ F     
Sbjct: 420 VTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+I+     S +   L  +  ++ 
Sbjct: 478 ----RLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L    +A TT  +LL +  G     P   L   R           L++ + +++I+ A
Sbjct: 534 DQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTSEEIIFA 593

Query: 606 FVYD--STCKLLVVSSKGNAFIVEESEIIA----NTRKGKTFLKVSS-EEKMKLVVKVTG 658
            + +         V+  G    VE  E        ++  K   K+   E+ +  V  V  
Sbjct: 594 ELVENFEEGTYFAVTQYGQIKRVERKEFTPWRTYKSKSTKYA-KLKDAEDVVITVSPVVL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D + ++ E    L F+I+++P +  +  GV+  + KDG +           +  +    R
Sbjct: 653 DDIMLMTEKGYALRFNIEEVPIIGAKAAGVKAVNLKDGDVVVAAFISNTSSVYLL--TQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              +        +  R   G  V +    +  +  ++
Sbjct: 711 GSFKRMATEEIPVTSRAKRGLQVLRELKAKPHRVFAA 747


>gi|166712712|ref|ZP_02243919.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 747

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 269/755 (35%), Positives = 431/755 (57%), Gaps = 21/755 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RY LI GQGNFG+ D   
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYRLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +      +    IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATY-----KKEHANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F+ +D+E  +  N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA-----RRSPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T ++  L ++G+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLAAVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI----SDVICFKICEGLTWIDSA 715
            +  V     LL     ++PE+ +GKG ++       +       +          + S 
Sbjct: 650 RIVAVTSAGNLLAVPATEVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+ + S  DL  ++G R   G+L+P+G+ +    
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGALLPRGWQKVDGL 744


>gi|33469294|gb|AAQ19684.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 798

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 216/755 (28%), Positives = 404/755 (53%), Gaps = 24/755 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   LSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMHSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +++ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELVRDINKETVAFVPNYDDTTLEPMVLPARFPNLLVNGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGG I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVTQLMKYIKGPDFPTGG-IIQGVDGIKKAYETGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVDEETLRNGRQQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIIEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   +F  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNAEAIKNYLFKNSDLQIAYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + +   ++R+ I++GL+ A   +DE+I +IRN       K  +V+ F  TE Q +
Sbjct: 359 ANRTKYDLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAEFEFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +++E + L    ++   +L++       I  E+ ++++ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALENEHNELANLIKEYRHILDNHDALLQVIKSELTDIRKRFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   A+    ++ M+  E + + I+ +G+I+   + S     ++ +  K
Sbjct: 479 ------RLSSIEAEIAEIKIDKEVMVPSEDVVLSITRQGYIKRTSTRSFNASGVTEVGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ L+  + +V 
Sbjct: 533 DGDSLLKYQTVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPLDDYETVVD 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    +      ++ +  G       S        K    +KV   +++  V+++  D 
Sbjct: 593 VYNEQSFKDDAFYVLATRNGMIKKSNVSLFKTTRYNKPLVAMKVKDNDELINVIRLNEDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S +++ +   R  GV+  + KD     +      +  + I +  R 
Sbjct: 653 LISVLTHKGMSLTYSSEELSDTGLRAAGVKSINLKDEDFVVMTDVVDSDS-SIIMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
             +  +  +    KR   G  + K   ++  + ++
Sbjct: 712 AVKRISYKILQQAKRAQRGITLLKELKKNPHRVVA 746


>gi|20530729|gb|AAM27207.1|AF503577_1 topoisomerase IV ParC [Streptococcus pneumoniae]
          Length = 823

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 213/748 (28%), Positives = 386/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD+S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTGG I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGG-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ +T G     P   L   R       L   + + +        
Sbjct: 534 DRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYA 593

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
                +D        +  G    VE  E         K   + K+  E +++  V  +  
Sbjct: 594 EVLEQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++ +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 654 DDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSTEEIPATSRAKRGLQVLRELK 739


>gi|307709029|ref|ZP_07645489.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK564]
 gi|307620365|gb|EFN99481.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK564]
          Length = 826

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 212/748 (28%), Positives = 389/748 (52%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTGG I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGG-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + +   N++++  
Sbjct: 534 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEVIYV 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D        +  G    VE  E         K   + K+  E +++  V  +  
Sbjct: 594 EVVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++ +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 654 DDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSTEEIPATSRAKRGLQVLRELK 739


>gi|221211614|ref|ZP_03584593.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD1]
 gi|221168975|gb|EEE01443.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD1]
          Length = 773

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 287/747 (38%), Positives = 425/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGPDAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 SKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI NP+++ E+L+  I GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIASAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------------------AKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES ++  VR+V  PK+R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLLT 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  +D R+ IL+G +I +LN+DE+I IIR  D+PK  ++S
Sbjct: 380 ILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLDEVIRIIRESDEPKAALMS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q + IL +RLR L +LE+ +I+ EL++L  EK K++ LL +       +  EI
Sbjct: 440 AFGLTERQAEDILEIRLRQLARLEKIKIEKELESLRDEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 EADAKQYGD-----DRRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK GDSL  A    T DR++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PAGFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  +   +   LL+ SS G  FI +  ++++  + GK+F+ +         + V   
Sbjct: 611 SHLMHYYAASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLPN 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F ID++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ATQVACLSSGGRLLVFGIDEMKALSGGGRGVTLMAL-DDKETLVQALAIDPAGVVLIGTG 729

Query: 717 RSYNRSENDLLG-----WLGKRGGVGS 738
           R     +  L        +GKR   G 
Sbjct: 730 RGGKVQDETLSYAGLAPHIGKRARKGR 756


>gi|169832887|ref|YP_001694308.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225854361|ref|YP_002735873.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae JJA]
 gi|225856522|ref|YP_002738033.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae P1031]
 gi|168995389|gb|ACA36001.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225723240|gb|ACO19093.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae JJA]
 gi|225725136|gb|ACO20988.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae P1031]
          Length = 826

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/748 (28%), Positives = 390/748 (52%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 244 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 304 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 363 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 423 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 481 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + +   N++I+  
Sbjct: 537 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 596

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D       V+  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 597 EVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 657 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQR 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 715 GSLKRVSIEEILATSRAKRGLQVLRELK 742


>gi|332360837|gb|EGJ38643.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK49]
          Length = 842

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 208/756 (27%), Positives = 388/756 (51%), Gaps = 27/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 28  SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 87

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 88  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 147

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 148 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 207

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 208 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 266

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 267 KTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 326

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 327 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 385

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 386 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 445

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 446 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 503

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 504 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDD 559

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 560 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 619

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 620 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLD 679

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 680 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 737

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
             +        +  R   G  V +    +  +  ++
Sbjct: 738 SLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFAA 773


>gi|83721285|ref|YP_441495.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis E264]
 gi|257139821|ref|ZP_05588083.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis E264]
 gi|83655110|gb|ABC39173.1| DNA topoisomerase IV, A subunit [Burkholderia thailandensis E264]
          Length = 772

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 286/747 (38%), Positives = 420/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------------------AKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAV 319

Query: 302 RDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES     VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 EADAKQYGDE-----RRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  F   +   LL+ SS G  FI +  ++++  + GK+F+ + +       + V   
Sbjct: 611 SHLLHYFAAPAEQPLLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPD 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTG 729

Query: 717 RSYNRSEN-----DLLGWLGKRGGVGS 738
           R     E       L   +GKR   G 
Sbjct: 730 RGGKAQEEALAGGALEPHVGKRARKGR 756


>gi|306829665|ref|ZP_07462855.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus mitis ATCC
           6249]
 gi|304428751|gb|EFM31841.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus mitis ATCC
           6249]
          Length = 826

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 211/748 (28%), Positives = 384/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTGG I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGG-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSALEDTANVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ +T G     P   L   R       L   +   +        
Sbjct: 534 DRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITSFETNEEILYA 593

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
                ++        +  G    VE  E         K   + K+  E +++  V  +  
Sbjct: 594 EVVDQFEDAITYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++ +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 654 DDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSSFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIDEIPATSRAKRGLQVLRELK 739


>gi|183603468|ref|ZP_02715087.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574650|gb|EDT95178.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC0288-04]
          Length = 826

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/748 (28%), Positives = 390/748 (52%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 244 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 304 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 363 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 423 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 481 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + +   N++I+  
Sbjct: 537 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 596

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D       V+  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 597 EVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 657 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQR 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 715 GSLKRVSIEEILSTSRAKRGLQVLRELK 742


>gi|73916822|gb|AAZ93279.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916906|gb|AAZ93321.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916914|gb|AAZ93325.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/747 (28%), Positives = 389/747 (52%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|73916842|gb|AAZ93289.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/747 (28%), Positives = 389/747 (52%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|33592393|ref|NP_880037.1| DNA topoisomerase IV subunit A [Bordetella pertussis Tohama I]
 gi|33572038|emb|CAE41562.1| topoisomerase IV subunit A [Bordetella pertussis Tohama I]
 gi|332381809|gb|AEE66656.1| DNA topoisomerase IV subunit A [Bordetella pertussis CS]
          Length = 771

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 263/770 (34%), Positives = 412/770 (53%), Gaps = 47/770 (6%)

Query: 6   ISNSNTL------VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           +S+SN          +  +A++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++
Sbjct: 1   MSDSNQPGLFDGGATDPHEAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM  MGL  GA   KSAR+VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI G GNFG
Sbjct: 61  AMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           + DGD+AAA RYTEAR+T  ++L+L  ++E  VDF   Y+    EP + P++ P +L NG
Sbjct: 121 SRDGDNAAAMRYTEARLTPFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            SGIAVGMAT IPSHN++E+ +A +ALI NP++  E+LL  + GPDF  GG I+     I
Sbjct: 181 ASGIAVGMATEIPSHNLREVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADI 240

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            + Y  GRG  + RARW  EE+ RG W +VVTE+P      +++E+I E+   K     +
Sbjct: 241 AQIYATGRGSLKARARWQFEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKK 300

Query: 300 DIRDE--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            +  E                        VR+V  PK   +D D  + ++   + ME+  
Sbjct: 301 SLSAEQQQAKAVMLSLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNV 360

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
           P+N+  +     P+   L  +L+EW+A R + + RR+  R+  +  R+ +L+G ++ YLN
Sbjct: 361 PVNVVCIGTDGRPRQKSLRDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLN 420

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           +DE+I  IR  ++P+  +++RF LTE Q + IL +RLR L +LE  +I+ EL     E+ 
Sbjct: 421 VDEVIQTIREAEEPRAALMARFGLTERQAEDILEMRLRQLARLEGIKIEQELAGKREEQL 480

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  LL++       +  EI    + +        RRT      RA      +  +  EP
Sbjct: 481 RLQDLLDNPGSLKRLLIKEIEGDAKQYGD-----DRRTLIETAERAVL----ETKVVDEP 531

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +TV++S +GW+R+ + H  D     FK+GD L  A    TTD ++ +  +G+ Y++    
Sbjct: 532 VTVIVSQKGWLRARQGHGHDAGQFSFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVSG 591

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L S RG G+ +  +IDL     IV         + L+ + +G  F    S++ +  R GK
Sbjct: 592 LPSARGDGQPVTTMIDLEAGTRIVHTIAAAPDSRWLLATRRGFGFAARLSDMSSRQRAGK 651

Query: 640 TFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGG 696
            F+ +   +++   V +      +A++    K L+F +D++  +   G+G  L       
Sbjct: 652 QFITLEKGDELLRPVPLFEGATQLALLSAKGKFLVFDLDEVKSLSGGGRGTILMGLDTAD 711

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSEND------LLGWLGKRGGVGSLV 740
             D        G   + +AG   N+   D      L  ++GKR   G  +
Sbjct: 712 KLDQTVPIGAAG---LRAAGIYRNKQTEDILAGAALAPYVGKRARKGRQL 758


>gi|253753461|ref|YP_003026602.1| topoisomerase IV subunit A [Streptococcus suis P1/7]
 gi|253755713|ref|YP_003028853.1| topoisomerase IV subunit A [Streptococcus suis BM407]
 gi|226237529|dbj|BAH47277.1| topoisomerase IV subunit A [Streptococcus suis]
 gi|251818177|emb|CAZ55975.1| topoisomerase IV subunit A [Streptococcus suis BM407]
 gi|251819707|emb|CAR45533.1| topoisomerase IV subunit A [Streptococcus suis P1/7]
 gi|292558209|gb|ADE31210.1| topoisomerase IV, subunit A [Streptococcus suis GZ1]
 gi|319757994|gb|ADV69936.1| topoisomerase IV subunit A [Streptococcus suis JS14]
          Length = 817

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/757 (28%), Positives = 390/757 (51%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   +EKL+E++ GPDFPTG  I++  + I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGA-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RCEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  ++  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  
Sbjct: 301 ELKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNF-TPRQVGLQKILSSYIAHRREIIIA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENLKISYEFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L  + + + +++   +  +N +  E+REVK+ F     
Sbjct: 420 VTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+I+     S +   L  +  ++ 
Sbjct: 478 ----RLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L    +A TT  +LL +  G     P   L   R           L++ + N++I+ A
Sbjct: 534 DQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTNEEIIFA 593

Query: 606 FVYD--STCKLLVVSSKGNAFIVEESEIIA----NTRKGKTFLKVSS-EEKMKLVVKVTG 658
            + +         V+  G    VE  E        ++  K   K+   E+ +  V  V  
Sbjct: 594 ELVENFEEGTYFAVTKYGQIKRVERKEFTPWRTYKSKSTKYA-KLKDAEDVVITVSPVVL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D + ++ E    L F+I+++P +  +  GV+  + KD  +           +  +    R
Sbjct: 653 DDIMLMTEKGYALRFNIEEVPIIGAKAAGVKAVNLKDEDVVAAAFISNTSSVYLL--TQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              +        +  R   G  V +    +  +  ++
Sbjct: 711 GSLKRMATEEIPVTSRAKRGLQVLRELKAKPHRVFAA 747


>gi|296122514|ref|YP_003630292.1| DNA gyrase, subunit alpha [Planctomyces limnophilus DSM 3776]
 gi|296014854|gb|ADG68093.1| DNA gyrase, A subunit [Planctomyces limnophilus DSM 3776]
          Length = 938

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 216/769 (28%), Positives = 366/769 (47%), Gaps = 61/769 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            S S T   + +  V++   +   Y+ YA+S I  RA+PD RDG KP  RRI+ AM+++ 
Sbjct: 2   PSASFTPQPDRILPVAIEGEMRTSYVTYAMSVIISRALPDARDGLKPSQRRILVAMNDLN 61

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L   +   K A+I G+  G  HPHGD S+Y +LVRLAQ +  R  LI  QGNFG++ G  
Sbjct: 62  LGPNSGRVKCAKICGDTSGNYHPHGDGSIYPTLVRLAQNWNMRETLIDKQGNFGSLAGLP 121

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ VA  +L  +  D VD+  TY++ + EPVV PS+FPNLL NG+SGIAV
Sbjct: 122 PAAMRYTEARLSAVASEMLDDLKRDTVDYVLTYDQRNREPVVLPSRFPNLLVNGSSGIAV 181

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN+ E+ +A + L+++PE SI++L+E + GPDFPTGG I+  R  I + Y  
Sbjct: 182 GMATSIPPHNLAEVSQAVIRLLEDPETSIDELMEVLPGPDFPTGG-IICGRYGIRQGYLT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GR    +RA+         +  I VTEIPY   + R+ EK+ +L+   +I  +  I D +
Sbjct: 241 GRSTLTLRAKTRFLTEK-NTDIIEVTEIPYLETRDRIREKLEQLVRDDKIKGISRIVDLT 299

Query: 306 AED----VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
                     +     R  D ++++  +F  S +++ F + +  L  G  P+ M +  ++
Sbjct: 300 DRTTPAWQVCLHIVLKRDADKEVILNQLFQYSPLQSTFSVILLAL-SGNRPKTMNIKELI 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-- 419
            E++ HR  V+ R++ F++    +R   ++GLLIA LNIDE+I  IR+            
Sbjct: 359 GEFIRHRITVIRRKTEFQLAEARKRKHTIEGLLIAQLNIDEVIQTIRSSGSRAEAKERLQ 418

Query: 420 -----------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         +SL+ NQ +AI++++L SL  LE+ +++ E
Sbjct: 419 AILVPSAMVARALGDAGFMEFQSEQGVRETYSLSANQTEAIVSMQLGSLANLEQEKLRGE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              L+ +      LL+        I  E++++ + +  +     RRT   E   +     
Sbjct: 479 HQRLIEDIFGYLHLLSDEAHIRAVIREEMQKLGDKYGNA-----RRTEISEDELS--DVD 531

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDR 562
           ++ +I +E + V +S RG+I+ L  H+          +      + D+++    + T D 
Sbjct: 532 KEDLIPEEMMVVTLSQRGYIKRLPIHTYQAQNRGGRGIMGAKADDEDAIQDLFISSTHDW 591

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF---VYDSTCKLLVV 617
           +L  +  G+ +     +L       +  A+  L+ L   + + T      ++    L++ 
Sbjct: 592 LLFFTDKGRVFWQKVYDLPLQSRTSKGRALVNLLSLQEGEQVATCVNTRTFEENRYLVMA 651

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           +  G             T+ G   + +   + +     ++  + + +   N   + FS  
Sbjct: 652 TRAGIVKKTSLDAYKRPTKGGIIAINLKDGDALIEARILSAQEDILLSTANGMAIRFSQA 711

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
               M R   GVR    +       +       +T +    + Y +   
Sbjct: 712 DARAMGRNTSGVRGIKLRKDDEVIGMVVADP-AMTLLTMCEKGYGKRTP 759



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 62/198 (31%), Gaps = 17/198 (8%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
            LL         +       G  +G A +  I  +   D+    +      ++ +S +G 
Sbjct: 491 HLLSDEAHIRAVIREEMQKLGDKYGNARRTEISEDELSDVDKEDLIPEEMMVVTLSQRGY 550

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVAVVGENRKLLIFSIDQIP 679
              +      A  R G+  +   ++++     L +  T D +    +  ++    +  +P
Sbjct: 551 IKRLPIHTYQAQNRGGRGIMGAKADDEDAIQDLFISSTHDWLLFFTDKGRVFWQKVYDLP 610

Query: 680 EMSRG-KG---VRLQSYKDGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGK 732
             SR  KG   V L S ++G      C       E    + +      +  +       K
Sbjct: 611 LQSRTSKGRALVNLLSLQEGEQV-ATCVNTRTFEENRYLVMATRAGIVKKTSLDAY---K 666

Query: 733 RGGV-GSLVPKGFPRSGK 749
           R    G +      + G 
Sbjct: 667 RPTKGGIIAINL--KDGD 682



 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           +I    R GK         K+  V    GDHV +V    K+      +I E+ R  +GVR
Sbjct: 825 DIRVIPRNGKVV-------KILAVQ--EGDHVLIVTAGGKIQRVRAAEISEIGRNTQGVR 875

Query: 689 LQSYKDGGISDVICFKICE 707
           +    +G     +     +
Sbjct: 876 VIKLTEGDRVASMARIPAD 894



 Score = 45.1 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLV 653
           +  N  +V          +L+V++ G    V  +EI    R   G   +K++  +++  +
Sbjct: 829 IPRNGKVVKILAVQEGDHVLIVTAGGKIQRVRAAEISEIGRNTQGVRVIKLTEGDRVASM 888

Query: 654 VKVTGD 659
            ++  D
Sbjct: 889 ARIPAD 894



 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 6/70 (8%)

Query: 686 GVRLQSY--KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
           GVR      ++G +  ++     EG   +        +           R   G  V K 
Sbjct: 822 GVRDIRVIPRNGKVVKILAV--QEGDHVLIVTAGGKIQRVRAAEISEIGRNTQGVRVIKL 879

Query: 744 FPRSGKFLSS 753
               G  ++S
Sbjct: 880 TE--GDRVAS 887


>gi|42782666|ref|NP_979913.1| DNA topoisomerase IV subunit A [Bacillus cereus ATCC 10987]
 gi|217960998|ref|YP_002339566.1| DNA topoisomerase IV subunit A [Bacillus cereus AH187]
 gi|229140209|ref|ZP_04268767.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST26]
 gi|42738592|gb|AAS42521.1| DNA topoisomerase IV, A subunit [Bacillus cereus ATCC 10987]
 gi|217067187|gb|ACJ81437.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH187]
 gi|228643295|gb|EEK99568.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST26]
          Length = 807

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAAGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|289167750|ref|YP_003446019.1| topoisomerase IV subunit A [Streptococcus mitis B6]
 gi|288907317|emb|CBJ22154.1| topoisomerase IV subunit A [Streptococcus mitis B6]
          Length = 823

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/748 (28%), Positives = 391/748 (52%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   ++KL+E++ GPDFPTGG I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGG-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+   + S     L  +  ++ 
Sbjct: 478 ----RLSSLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSTRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ +T G     P   L   R           + +   N++I+  
Sbjct: 534 DRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADTRWKDIGEHLSQTITNFETNEEILYV 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D        +  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 594 EVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDDTDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++ +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 654 DDVLLISQNGYALRFNIEEVPVVGAKAAGVKTMNLKEDDVLQSAFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIDEIPATSRAKRGLQVLRELK 739


>gi|257461234|ref|ZP_05626331.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268]
 gi|257441262|gb|EEV16408.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268]
          Length = 914

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 244/771 (31%), Positives = 389/771 (50%), Gaps = 35/771 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN    + +  + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+  
Sbjct: 3   SNMFENQEIIDIDVEESIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGS 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R P + GQGNFG+IDGD AAA
Sbjct: 63  RQPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRIPSVDGQGNFGSIDGDGAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT +AE +L+ +D++ VDF   Y+E  +EP V P++ PNLL NG+SGIAVGMA
Sbjct: 123 MRYTEARMTPLAEELLKDLDKETVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H++ E+    L L++N   S+E+++  I GPDFPTGG I+  ++ I+E+Y+ GRG
Sbjct: 183 TNIPPHSLDELVGGLLILLENKNASLEEIMGEIKGPDFPTGG-IIYGKKGIIEAYKTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA+  + E       IV+ E+PYQ  K+RLIE+IA+L+  K+I  + ++RDES  D
Sbjct: 242 RVKIRAKTHI-EKKASKDVIVIDELPYQTNKARLIEQIADLVKEKQIEGISEVRDESDRD 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R    ++++ ++F  + ME  F + + +   G+ P++  L  +LK +L HR
Sbjct: 301 GIRVVIELKRDAMSEIVLNNLFKQTTMEATFGV-IMLAIDGKEPKIFTLIELLKLFLNHR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTE 425
           + V+ RR+ F +Q    R  IL+GL IA  NIDE+I +IRN          ++SRF L+E
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIDVIRNSADTNVARENLMSRFDLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  LE  +I+ EL  +LAE +++D++L S +     I  E+ E+K+ 
Sbjct: 420 AQSGAILDMRLSRLTGLEREKIEEELKEILAEIKRLDAILKSEELIEGIIKDELLEIKDK 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F                     A     +       +           K       A+  
Sbjct: 480 FKCPRITEIVDDYEDIDIEDLIANENMVVTITHRGYIKRVPSKTYEKQKRGGKGRVAVTT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
            + D ++    ++T D ++ ++  G+ Y L    +        G+A+  LI L  ++ I+
Sbjct: 540 YDDDFIESFFTSNTHDTLMFITDRGQLYWLKVYKIPEGSRTAKGKAVVNLIQLGADEKIM 599

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                  +D +  L+  +  G       SE       G   + +  ++ +   +      
Sbjct: 600 AIIPTTDFDPSKSLVFFTRNGIVKRTNLSEFKNIRSLGIRAISLDEDDTLVTALIAPNSA 659

Query: 661 VAVVGENRKLLIFS------IDQIPEMSRGKGVRLQSYKDGGISDVI-CFKICEGLT--- 710
             +       L          ++I E         Q   +G   ++       EG     
Sbjct: 660 EEMQNYKGGALSGDDLDGGEAEEILEQ------TEQDILEGSEDEISDEISQDEGAQDGE 713

Query: 711 --------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      +  +      N        R   G    K   +  + + +
Sbjct: 714 PQSTNENMLFIATKKGMCLKFNLNKIRQMGRIARGVKGIKFKEKGDEVIGA 764



 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 2/113 (1%)

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISD 699
           +      +         + + +  +    L F++++I +M R  +GV+   +K+ G    
Sbjct: 703 ISQDEGAQDGEPQSTNENMLFIATKKGMCLKFNLNKIRQMGRIARGVKGIKFKEKGDEVI 762

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              F + +    +  + +   +        L  RGG G +  K   R+G+ + 
Sbjct: 763 GAAFILSDMQEILSVSQKGIGKRTTASEYRLTNRGGKGVICMKLTNRTGELIG 815



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSK 620
            + + +  G         +         ++ +       +++  AF+     ++L VS K
Sbjct: 721 MLFIATKKGMCLKFNLNKIRQMGRIARGVKGIKFKEKGDEVIGAAFILSDMQEILSVSQK 780

Query: 621 GNAFIVEESEIIANTRKGK--TFLKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           G       SE     R GK    +K+++   ++  VV V  +  +  +  + K++   + 
Sbjct: 781 GIGKRTTASEYRLTNRGGKGVICMKLTNRTGELIGVVMVDEEMDLMALTTSGKMIRVDMQ 840

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVIC 702
            I +  R   GV + + +   +  +  
Sbjct: 841 SIRKAGRNTSGVIVVNVEGDDVVSIAT 867



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 41/140 (29%), Gaps = 6/140 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSS-EEKMKLVVKVTGD--HVAVV 664
           +   L + + KG       ++I  +    +G   +K     +++     +  D   +  V
Sbjct: 718 NENMLFIATKKGMCLKFNLNKIRQMGRIARGVKGIKFKEKGDEVIGAAFILSDMQEILSV 777

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
            +       +  +    +RG KGV      +     +    + E +  +           
Sbjct: 778 SQKGIGKRTTASEYRLTNRGGKGVICMKLTNRTGELIGVVMVDEEMDLMALTTSGKMIRV 837

Query: 724 NDLLGWLGKRGGVGSLVPKG 743
           +        R   G +V   
Sbjct: 838 DMQSIRKAGRNTSGVIVVNV 857


>gi|73916832|gb|AAZ93284.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/747 (28%), Positives = 388/747 (51%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIENLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|253731988|ref|ZP_04866153.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724398|gb|EES93127.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 800

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 213/756 (28%), Positives = 398/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGG I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGG-IIQGVDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|167580263|ref|ZP_02373137.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis TXDOH]
          Length = 772

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 286/747 (38%), Positives = 420/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------------------AKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAV 319

Query: 302 RDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES     VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIREI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 EADAKQYGDE-----RRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  F   +   LL+ SS G  FI +  ++++  + GK+F+ + +       + V   
Sbjct: 611 SHLLHYFAAPAEQPLLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPD 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTG 729

Query: 717 RSYNRSEN-----DLLGWLGKRGGVGS 738
           R     E       L   +GKR   G 
Sbjct: 730 RGGKAQEESLAGGALEPHVGKRARKGR 756


>gi|298503138|ref|YP_003725078.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|6851038|emb|CAA91551.2| DNA topoisomerase IV [Streptococcus pneumoniae]
 gi|298238733|gb|ADI69864.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 823

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/748 (28%), Positives = 389/748 (52%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + +   N++I+  
Sbjct: 534 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D       V+  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 594 EVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 654 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIEEILATSRAKRGLQVLRELK 739


>gi|168705215|ref|ZP_02737492.1| DNA gyrase subunit A [Gemmata obscuriglobus UQM 2246]
          Length = 883

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 222/757 (29%), Positives = 363/757 (47%), Gaps = 60/757 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  + +   L + YL YA S I  RA+PD+RDG KP  RRI+ AM+++GL   ++  K A
Sbjct: 23  INPLDIVDELRDSYLTYAQSVIISRALPDVRDGLKPSQRRILVAMNDLGLGPASSTSKCA 82

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            I+GE + + HPHGD S+YDSLVR+AQ +  RY L+ GQGNFG+I G   AA+RYTEAR+
Sbjct: 83  GIIGETMKRYHPHGDASIYDSLVRMAQDWNLRYRLVHGQGNFGSIAGLPPAAHRYTEARL 142

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A  +L+ ++ D VDF D Y+ +  EP+V P KFPNLL NG+ GIAVGMAT IP HN+
Sbjct: 143 TPAAGELLEDLERDTVDFIDNYDGKYREPLVLPGKFPNLLVNGSDGIAVGMATHIPPHNL 202

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+C+A + L+DNP  ++  L++ I GPDFPTGG I+  R+ ++E+Y  G G   +RAR 
Sbjct: 203 REVCKALVLLLDNPGATLADLIQIIPGPDFPTGG-IIMGRQGLLEAYARGAGKITLRARA 261

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV---RIV 312
            V  EV   S  I+++E+P+QV ++ ++E+IA L+  +RIP +  +RDES+        +
Sbjct: 262 QVMEEVKGRSPSILISEVPFQVTRNAIVEEIAHLVKEERIPDVSGVRDESSARNGEPVRL 321

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP L++  ++  + ++    + M  L     P+ + L  +L+++L HR  V+
Sbjct: 322 IVEIKRGKDPHLVLNQLYQYTKLQKTVSIIMLALVD-GRPRELTLKEMLQKFLDHRVHVI 380

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            RR+ F ++   +R  +L+G LIA  +I+++I I R                        
Sbjct: 381 RRRTEFLLREAKKRGHVLEGQLIAIADIEQVIQICRTSPNRAEAKARLQGLAVPAALMQR 440

Query: 420 ------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + +TE Q +A++NLRL  L  LE  +I  E   L       
Sbjct: 441 AIGEGAFAALQRELGAVAEYRMTEQQAEAVVNLRLGQLAALESEEILKEYLQLRELIRGY 500

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           ++LL+        I  ++  +   +              EVS        + +I  EP  
Sbjct: 501 ETLLSDDANIHAVIREDLERMAAKYGDDRKT--------EVSDDGGDVDMEDLIVDEPNV 552

Query: 522 VVISNRGWIRSLKSHSVDLSALHF-------KEGDSLKIALHAHTTDRILLLSTDGKAYT 574
           V IS+ G+++ +      +            ++ D ++    A T   +L  +  G+ Y 
Sbjct: 553 VTISHEGFVKRMALTEYRVQGRGGKGVQGGLRDNDFVEHFFVASTKAYLLCFANTGRMYW 612

Query: 575 LPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEES 629
           L    + +      G AI  ++ L   + I +      +     LL+ + +G     +  
Sbjct: 613 LKVYRIPTAGRTSPGRAIANVLSLAEGEKISSIVPVREFVEGAHLLMATRQGTVKKTDLM 672

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
                 + G   + +   +++  V      D V +  +    + F    I  M R  +GV
Sbjct: 673 AYSNVRQGGIIGITLDEGDELINVALTRANDEVVLSTQKGMAIRFRESAIRPMGRTARGV 732

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           R            +     +GL  +      Y +   
Sbjct: 733 RGIKLGKDDALVGMVVADPDGL-LLTVCENGYGKRTP 768


>gi|30263544|ref|NP_845921.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Ames]
 gi|47528942|ref|YP_020291.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186396|ref|YP_029648.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Sterne]
 gi|49478288|ref|YP_037676.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141940|ref|YP_084889.1| DNA topoisomerase IV subunit A [Bacillus cereus E33L]
 gi|65320875|ref|ZP_00393834.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bacillus anthracis str. A2012]
 gi|165871002|ref|ZP_02215653.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0488]
 gi|167636462|ref|ZP_02394760.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0442]
 gi|167640597|ref|ZP_02398859.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0193]
 gi|170688468|ref|ZP_02879676.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0465]
 gi|170708104|ref|ZP_02898551.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0389]
 gi|177652496|ref|ZP_02934963.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0174]
 gi|190564666|ref|ZP_03017587.1| DNA topoisomerase IV, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196038438|ref|ZP_03105747.1| DNA topoisomerase IV, A subunit [Bacillus cereus NVH0597-99]
 gi|227813572|ref|YP_002813581.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. CDC 684]
 gi|228934868|ref|ZP_04097699.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229197704|ref|ZP_04324424.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1293]
 gi|229601236|ref|YP_002867789.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0248]
 gi|254686163|ref|ZP_05150022.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. CNEVA-9066]
 gi|254726070|ref|ZP_05187852.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. A1055]
 gi|254738636|ref|ZP_05196339.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744806|ref|ZP_05202484.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Kruger B]
 gi|254752954|ref|ZP_05204990.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Vollum]
 gi|254759226|ref|ZP_05211252.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Australia
           94]
 gi|301055083|ref|YP_003793294.1| DNA topoisomerase IV subunit A [Bacillus anthracis CI]
 gi|30258179|gb|AAP27407.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Ames]
 gi|47504090|gb|AAT32766.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180323|gb|AAT55699.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Sterne]
 gi|49329844|gb|AAT60490.1| DNA topoisomerase IV, subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975409|gb|AAU16959.1| DNA topoisomerase IV, subunit A [Bacillus cereus E33L]
 gi|164713213|gb|EDR18739.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0488]
 gi|167511465|gb|EDR86849.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0193]
 gi|167528121|gb|EDR90913.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0442]
 gi|170126912|gb|EDS95792.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0389]
 gi|170667638|gb|EDT18393.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0465]
 gi|172082170|gb|EDT67237.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0174]
 gi|190563983|gb|EDV17947.1| DNA topoisomerase IV, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196030846|gb|EDX69444.1| DNA topoisomerase IV, A subunit [Bacillus cereus NVH0597-99]
 gi|227005775|gb|ACP15518.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. CDC 684]
 gi|228585781|gb|EEK43879.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1293]
 gi|228824768|gb|EEM70569.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229265644|gb|ACQ47281.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0248]
 gi|300377252|gb|ADK06156.1| DNA topoisomerase IV subunit A [Bacillus cereus biovar anthracis
           str. CI]
 gi|324327494|gb|ADY22754.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 807

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|229092561|ref|ZP_04223717.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-42]
 gi|228690848|gb|EEL44623.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-42]
          Length = 807

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVSNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|73916844|gb|AAZ93290.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 820

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 212/746 (28%), Positives = 387/746 (51%), Gaps = 27/746 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA
Sbjct: 1   IQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+
Sbjct: 61  KSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+
Sbjct: 121 SEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNL 180

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++ 
Sbjct: 181 AEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSKT 239

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +    
Sbjct: 240 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 299

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS
Sbjct: 300 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILARS 358

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILN 433
            F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ 
Sbjct: 359 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVT 418

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+      
Sbjct: 419 LQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP---- 474

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDS 550
             R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D 
Sbjct: 475 --RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDR 532

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFV 607
           L     A TT  +L+ ++ G     P   L   R           + +   N++I+   V
Sbjct: 533 LIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEV 592

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDH 660
              +D        +  G    VE  E         K   + K+  + +++  V  +  D 
Sbjct: 593 LDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDD 652

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R  
Sbjct: 653 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRGS 710

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
            +  +        R   G  V +   
Sbjct: 711 LKRVSIEEILATSRAKRGLQVLRELK 736


>gi|254251765|ref|ZP_04945083.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
 gi|124894374|gb|EAY68254.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
          Length = 773

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 287/747 (38%), Positives = 424/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGPDAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 SKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDAEIAAAYESGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------------------AKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLLA 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNID++I IIR  D+PK  ++S
Sbjct: 380 ILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDDVIRIIRESDEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LT+ Q + IL +RLR L +LE+ +I+ ELD L  EK K++ LL +       +  EI
Sbjct: 440 TFGLTDRQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLANDSAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S RGW+R+LK H +D
Sbjct: 500 EADAKQYGD-----DRRTLIQQEKRATF----EAKVVDEPVTVVVSQRGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +A  FK GDSL  A    T DR++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PAAFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  +   +   LL+ SS G  FI +  ++++  + GK F+ +         + V   
Sbjct: 611 SHLMHYYAAAADQPLLLASSNGFGFIAKVGDMVSRVKAGKAFMTIDEGAVPLAPMPVLPN 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +  +G
Sbjct: 671 ATQVACLSSGGRLLVFGMDEMKTLSGGGRGVTLMAL-DDKETLVQALAIEPAGVVLVGSG 729

Query: 717 RSYNRSENDLLG-----WLGKRGGVGS 738
           R     E  L        +GKR   G 
Sbjct: 730 RGGKVQEETLSYAGLAPHIGKRARKGR 756


>gi|326406528|gb|ADZ63599.1| topoisomerase IV subunit A [Lactococcus lactis subsp. lactis CV56]
          Length = 840

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 212/753 (28%), Positives = 392/753 (52%), Gaps = 22/753 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y++++R++Q +    PLI   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D V     +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEISGYLLADIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+  +EK++E++ GPDFPTGG I++ +  I ++Y  G+G   VR+
Sbjct: 182 NLGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGG-IIQGKGEIRKAYEKGKGRIVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   ++VTEIP+++ K+ L++KI ++ +  ++P + ++RDES  +   +  
Sbjct: 241 KVDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D  L++  +F  +D++  +  NM  +     P    +  +L+ ++ HR +V+ +
Sbjct: 301 ELKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNM-TPVQTGVLQMLRSYVKHREDVIVK 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F +   ++R+ I++GL+     +DE++A IR  +     K  +   F  TE Q +AI
Sbjct: 360 RSQFDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENIKVSFGFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L  +  ++ +++N  +  +N +  E+REVK+ F+K   
Sbjct: 420 VTLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDERTLFNLMKRELREVKKKFAKP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-SVDLSALHFKEGDS 550
             RR     EV   +    +  + E   ++V  S      S +S  S  L  +  ++ D 
Sbjct: 478 --RRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRTSPRSFASSALEEIGKRDDDE 535

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN---QDIVTAFV 607
           L    +A TT  +LL +  G     P   L   R       L   L++    + ++   +
Sbjct: 536 LLYYANAKTTQHLLLFTNLGNVIYRPIHELSDIRWKDIGEHLSQSLSNFSADEKVIFVQI 595

Query: 608 YDS--TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDHV 661
            D      LLVV+  G    +E            K   + K+   ++++ L+  V    +
Sbjct: 596 VDEFAGENLLVVTRNGQIKQIERESFSPWRTYRSKSTPYAKLKGEDDEIVLITPVQFADL 655

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            ++ EN   L F++D +P +  R  GV+  + K+G       F        +    R++ 
Sbjct: 656 MLISENGYALRFNLDDVPVLGARAAGVKAMNLKNGDKIKSAFFVNSNSWYLL--TQRAFI 713

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +           R   G  V +    +   + +
Sbjct: 714 KRVKTDDIPATSRANRGLQVLRTLKTNNHTVFA 746


>gi|30681440|ref|NP_187680.2| DNA gyrase subunit A family protein [Arabidopsis thaliana]
 gi|110808536|sp|Q9CAF6|GYRA_ARATH RecName: Full=Probable DNA gyrase subunit A,
           chloroplastic/mitochondrial; Flags: Precursor
 gi|332641422|gb|AEE74943.1| DNA gyrase subunit A [Arabidopsis thaliana]
          Length = 950

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 235/772 (30%), Positives = 377/772 (48%), Gaps = 36/772 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +    L     E Y++YALS +  RA+PD+RDG KPVHRRI+ AM E+G+     +K
Sbjct: 98  ESRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYK 157

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYDSLVR+AQ F  R PLI G GNFG+ID D  AA RYTE
Sbjct: 158 KCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTE 217

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +AE  +L  +D+D VDF   ++    EP V P++ P LL NG SGIAVGMAT+IP
Sbjct: 218 CRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIP 277

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +   ALI NPE ++++LLEY+  PDFPTGG I+     ++++YR GRG   V
Sbjct: 278 PHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGG-IIMGNLGVLDAYRTGRGRVVV 336

Query: 253 RARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R +  VE  +       +++TEIPYQ  K+ L++KIAEL+  K +  + DIRDES  +  
Sbjct: 337 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 396

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  DP L++ +++  + +++ F  NM  +     P++M L  +L+ ++  R  
Sbjct: 397 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICD-GEPKLMGLKELLQAFIDFRCS 455

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+ F++    +R  I++G+++   N+DE+I +I              S + L+E Q
Sbjct: 456 VVERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQ 515

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL + LR L  LE  +   E  +L  +  K++ LL++       I  E  E+K+ FS
Sbjct: 516 AEAILEITLRRLTALERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFS 575

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFK 546
                    +   ++   D    ++ ++       V              ++  S    +
Sbjct: 576 SPRRSMLEDSDSGDLEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLR 635

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
             D++   L  H  D +L  S  G  Y+  A  +     +  G  +  ++ ++  + + +
Sbjct: 636 VDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTS 695

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                 +     LL+++  G    V           G   ++++S +++K V   + D  
Sbjct: 696 IVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDL 755

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS-------------------DV 700
           VA+  +N  + + + D +  +SR  KGV     K+                       D 
Sbjct: 756 VAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSEDA 815

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              K   G   +      Y +          +   VG    K      +  +
Sbjct: 816 SLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAE-DDRLAA 866



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            +   ++D ++ +++      L   + +            + L +   I +  +  ++ +
Sbjct: 746 WVRCCSSDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLR 805

Query: 614 --------------------LLVVSSKGNAFIVEESEIIANT--RKGKTFLKVSSEEKMK 651
                               LL V   G    V  S    +   R G +  K + ++++ 
Sbjct: 806 KDMEEKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDRLA 865

Query: 652 LVVKV---------TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDV 700
            V  V         + + V +V ++  +    +  I   SR  +GV L      G I   
Sbjct: 866 AVFVVGYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDHAGKIQSA 925

Query: 701 ICFKICEGLTW 711
                 +    
Sbjct: 926 SLISAADEEET 936


>gi|229916009|ref|YP_002884655.1| DNA topoisomerase IV, A subunit [Exiguobacterium sp. AT1b]
 gi|229467438|gb|ACQ69210.1| DNA topoisomerase IV, A subunit [Exiguobacterium sp. AT1b]
          Length = 801

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 211/743 (28%), Positives = 371/743 (49%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  +SL   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      ++K
Sbjct: 5   QHILNLSLEQVVGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHHEGNTNDKPYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  RYPLI   GN G++DGD AAA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKLRYPLIDMHGNNGSMDGDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A ++L  + ++ VD+   +++   EP+V PS  PNLL NGT+GI+ G AT IP H
Sbjct: 125 RLSKIAGVMLTSIAKNTVDYTPNFDDSTEEPLVLPSLLPNLLMNGTTGISAGYATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+   A+A +       +  LEY+ GPDFPTGG  V  ++ I++++  G+G   +RA
Sbjct: 185 NLTEVLNLAIARLKGQVDIAKDALEYVTGPDFPTGG-TVMGKDGILKAFETGKGKVIIRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   I +TE+PY+V K+ L++K+ EL + K++  + ++RDE+      V+ 
Sbjct: 244 KSEIEQLKGGREQITITELPYEVNKANLVKKMEELRLDKKVEGVAEVRDETDRTGLRVVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + ++      +D++  +  NM  +   R P+ M +  I+  +L H  EV+ R
Sbjct: 304 ELKKEADAEGVLHFFLKHTDLQLAYNYNMVSIV-NRTPKQMGIIPIIDAYLKHVEEVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           R++F ++   +R EI+  L  A        E+I   +++   K  ++ RFS TE Q +A+
Sbjct: 363 RTTFELEQAKKRAEIVDALEQAISVLDETLELIRSAKDKADAKKKLMERFSFTERQAEAV 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E   L  E  ++ ++L+    +   I  E+  +++ F     
Sbjct: 423 VMLQLYRLTNTDIVELQKEAKALQKEIARLSNILDVDATKRKLIVKELTALRDEFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R +  E    +     + MI  E   V +S  G+++     S   S+    E    
Sbjct: 481 ----RRSVIESEVEELKLKTEVMIAVEETMVFVSRDGYVKRASMRSYGASSDVLPEMKEK 536

Query: 552 KIA---LHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT-- 604
                   A TTD +L+ +  G    +P   +     +  G+ +  L+ +   Q I    
Sbjct: 537 DRPLLTTQAMTTDHLLVWTNKGSYLLIPVHQIPESKWKDAGQHVANLVPIEGEQVISADV 596

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-KTFLKVSSEEKMKLVVKVTG-DHVA 662
              +D+    L V+  G        +  A  +      LK+  ++++       G   + 
Sbjct: 597 VSTFDTDAHCLFVTKDGMVKRTPLRDYDAQRKSKPLMALKLKGDDEVVFAGISDGPGQLF 656

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYN 720
           +V E    L F  D +P +  R  GV+  + KDG  ++D   F       ++    R   
Sbjct: 657 LVSERGYGLWFKEDDVPVVGQRAAGVKAMNLKDGDLVADAFSFFTPP--LFVLVTQRGAV 714

Query: 721 RSENDLLGW-LGKRGGVGSLVPK 742
           +       +    R   G+++ +
Sbjct: 715 KKMKLEDQFDCTNRNLRGTMLIR 737


>gi|167618386|ref|ZP_02387017.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis Bt4]
          Length = 772

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 286/747 (38%), Positives = 420/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------------------AKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAV 319

Query: 302 RDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES     VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAVLNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 EADAKQYGDE-----RRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  F   +   LL+ SS G  FI +  ++++  + GK+F+ + +       + V   
Sbjct: 611 SHLLHYFAAPAEQPLLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPD 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTG 729

Query: 717 RSYNRSEN-----DLLGWLGKRGGVGS 738
           R     E       L   +GKR   G 
Sbjct: 730 RGGKAQEEALAGGALEPHVGKRARKGR 756


>gi|172079626|ref|ZP_02709658.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|225858654|ref|YP_002740164.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae 70585]
 gi|225861251|ref|YP_002742760.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650392|ref|ZP_04524644.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CCRI 1974]
 gi|237822241|ref|ZP_04598086.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298229150|ref|ZP_06962831.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255379|ref|ZP_06978965.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|172042094|gb|EDT50140.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|225720948|gb|ACO16802.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae 70585]
 gi|225727348|gb|ACO23199.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           Taiwan19F-14]
          Length = 826

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/748 (28%), Positives = 389/748 (52%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 244 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 304 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 363 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 423 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 481 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + +   N++I+  
Sbjct: 537 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 596

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D       V+  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 597 EVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 657 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQR 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 715 GSLKRVSIEEILATSRAKRGLQVLRELK 742


>gi|182683769|ref|YP_001835516.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CGSP14]
 gi|182629103|gb|ACB90051.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CGSP14]
          Length = 826

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/748 (28%), Positives = 389/748 (52%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 244 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 304 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 363 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 423 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 481 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + +   N++I+  
Sbjct: 537 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 596

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D       V+  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 597 EVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 657 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQR 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 715 GSLKRVSIEEILATSRAKRGLQVLRELK 742


>gi|324994507|gb|EGC26420.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK678]
          Length = 816

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 209/756 (27%), Positives = 387/756 (51%), Gaps = 27/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   + KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVGKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
             +        +  R   G  V +    +  +  ++
Sbjct: 712 SLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFAA 747


>gi|284031379|ref|YP_003381310.1| DNA topoisomerase [Kribbella flavida DSM 17836]
 gi|283810672|gb|ADB32511.1| DNA topoisomerase (ATP-hydrolyzing) [Kribbella flavida DSM 17836]
          Length = 816

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 223/767 (29%), Positives = 367/767 (47%), Gaps = 36/767 (4%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + +      EE +  V +   +   +L YA S I  RA+PD RDG KPV RRI+ +M+E 
Sbjct: 6   STTAEPEDFEERILDVDVSDEMRTSFLEYAYSVIYSRALPDARDGLKPVQRRILFSMAEN 65

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            +       KSAR+VGEV+GK HPHGD ++YD+LVR AQP+  R PLI G GNFG++D D
Sbjct: 66  NIRPDRGHVKSARVVGEVMGKYHPHGDGAIYDALVRTAQPWSMRVPLIDGHGNFGSLD-D 124

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTE RM   A  +  G+DE+ VDF+  Y+ ++ EP V P+ FPNLL NG +GIA
Sbjct: 125 GPAAMRYTECRMAPPAMAMTNGLDENVVDFKPNYDGQEEEPAVLPAAFPNLLVNGAAGIA 184

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++  HN+ E+ +A   LI +P+  ++ L+ ++ GPD PTGG IV   E I ++Y 
Sbjct: 185 VGMATNMAPHNLVEVVQALRHLIKHPKADLDDLMRFVPGPDLPTGGKIV-GLEGIKDAYA 243

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG F++RA   +E V      IVVTE+PY V   ++IEKI  L+ AK++  + D++D 
Sbjct: 244 TGRGSFKMRATARIENVTPRRKGIVVTELPYTVGPEKVIEKIKTLVQAKKLQGIADVKDL 303

Query: 305 SAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           +       ++        P+ L+E ++ L+ +E  F +N   L     P+ + L  +L  
Sbjct: 304 TDRSHGTRLVIEVKNGFVPEALLEQLYKLTPLEDSFSINAVCLVD-GQPRTLGLRELLDV 362

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           +L HR +V  RRS FR +    R+ I+ GLLIA L+IDE+I IIR+ D     +  ++  
Sbjct: 363 YLEHRYDVTRRRSEFRRKKAQDRLHIVDGLLIAILDIDEVIQIIRSSDDAGAARTRLIDI 422

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + L+E Q + IL++ LR L K  + ++++E   L  E EK+ ++L         ++ E+ 
Sbjct: 423 YDLSEVQANYILDMPLRRLTKFSKLELETEKAELEREIEKLTAILEDEALLRKIVSEELA 482

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           +V + +        RRT   E S A K       +  +P  V++S+ G +          
Sbjct: 483 DVAKTYGTP-----RRTVLLESSGAAKTAAVPLEVTDDPCWVLMSSAGLLARTNGVEPFG 537

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--------AIQL 592
                 + D++  A+ +    +  L+++ G+   L + +L +               I  
Sbjct: 538 DGEGRAKHDAIVSAVKSTARGQYGLITSAGRLIRLESLDLPAVPTTANAPNLQGGAPIAE 597

Query: 593 LIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            ++L   +  +     D     + + ++ G    V    +    R     ++++  +++ 
Sbjct: 598 FVELEAGERALALTTMDPESVGVALGTATGVVKRVVPDHLS--NRDSWEIIRLADGDRVV 655

Query: 652 LVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKICE 707
             V      + +  +  + +LL F+   +    R   G+       G  +          
Sbjct: 656 GAVELATGEEELCFIASDAQLLHFNASVVRPQGRTAGGMAGIRLSAGAKVVFFGAVDPAR 715

Query: 708 GLTWIDS---------AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
               +                 +           RG  G    +   
Sbjct: 716 ESHVVTVAGSSSALPGTEVGAVKVTPFSEYPGKGRGTGGVRCQRLLK 762


>gi|183603806|ref|ZP_02721447.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae MLV-016]
 gi|183578628|gb|EDT99156.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae MLV-016]
          Length = 826

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/748 (28%), Positives = 389/748 (52%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 244 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 304 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 363 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 423 VTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 481 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + +   N++I+  
Sbjct: 537 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 596

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D       V+  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 597 EVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 657 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQR 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 715 GSLKRVSIEEILATSRAKRGLQVLRELK 742


>gi|163856284|ref|YP_001630582.1| DNA topoisomerase IV subunit A [Bordetella petrii DSM 12804]
 gi|163260012|emb|CAP42313.1| topoisomerase IV subunit A [Bordetella petrii]
          Length = 771

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 258/748 (34%), Positives = 400/748 (53%), Gaps = 41/748 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM +MGL  GA   KSAR+V
Sbjct: 21  ITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQDMGLGPGAKPVKSARVV 80

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI G GNFG+ DGD+AAA RYTEAR+T  
Sbjct: 81  GDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLTPF 140

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           + L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++E+
Sbjct: 141 SRLLLDELDEGTVDFAPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPSHNLREV 200

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +ALI  P +S E+L   + GPDF  GG I+     I + Y  GRG  + RARW  E
Sbjct: 201 AQACVALIKQPRLSDEELHAMVPGPDFAGGGQIITPAADIAQIYAGGRGSLKARARWRFE 260

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--------------- 304
           E+ RG W +VV E+P      +++E+I E+   K     + +  +               
Sbjct: 261 EMARGQWQLVVHELPPGTSCQKVLEEIEEITNPKVKTGKKSLTTDQQQAKAVMLNLLDAV 320

Query: 305 -----SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
                    VR+V  PK   +D D  + ++   + ME+  P+N+  +     P+   L  
Sbjct: 321 RDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSVPVNLVCIGTDGRPRQKGLRD 380

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EWLA R + + RR+  R+  +  R+ +L+G ++ YLN+DE+I  IR  D+PK  ++ 
Sbjct: 381 ILTEWLAFRTDTVVRRTRHRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDEPKAALMQ 440

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L+E Q + IL +RLR L +LE  +I+ EL +   E+ ++  LL++       +  EI
Sbjct: 441 RFQLSERQAEDILEMRLRQLARLEGIKIEQELADKREEQSRLQELLDNPASLKRLLVKEI 500

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT      RA      +  +  EP+TV++S +GW+R+ + H  D
Sbjct: 501 EADAKQYGDE-----RRTLIETAERAVL----ETKVVDEPVTVIVSQKGWLRARQGHGHD 551

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK+GD L  A    TTD ++ +  +G+ Y++    L S RG G+ +  +IDL   
Sbjct: 552 AAQFGFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVAGLPSARGDGQPVTTMIDLAPG 611

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             IV +       + L+ + +G  F     ++++  R GK F+ + + + +   V +   
Sbjct: 612 TRIVHSIAASPDSRWLLATQRGFGFAARLGDMVSRQRGGKQFITLEAGDALLRPVPLFDG 671

Query: 660 --HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              +A++    K L+F +D++  +S  G+G  L                  G   + + G
Sbjct: 672 ARQLALLSAKGKFLVFGLDEVKSLSAGGRGTILIGLDAADKLAQTVPVGPGG---LRATG 728

Query: 717 RSYNRSEND------LLGWLGKRGGVGS 738
              N+   D      L  ++GKR   G 
Sbjct: 729 IYRNKLTEDVLAGAALEPYVGKRARKGR 756


>gi|228922303|ref|ZP_04085610.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228953864|ref|ZP_04115903.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805832|gb|EEM52412.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228837358|gb|EEM82692.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 807

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|183603372|ref|ZP_02714487.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae SP195]
 gi|183571363|gb|EDT91891.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae SP195]
          Length = 826

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 212/748 (28%), Positives = 388/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 244 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 304 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 363 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 423 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 481 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + +   N++I+  
Sbjct: 537 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 596

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D        +  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 597 EVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 657 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQR 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 715 GSLKRVSIEEILATSRAKRGLQVLRELK 742


>gi|300692059|ref|YP_003753054.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum PSI07]
 gi|299079119|emb|CBJ51786.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum PSI07]
          Length = 781

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 275/770 (35%), Positives = 415/770 (53%), Gaps = 47/770 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPSEPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  AA+ALI + +++   L++Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVAIAAVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQIY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------ 297
             GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL   K          
Sbjct: 241 ETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTP 300

Query: 298 ------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
                       L+ +RDES     VR+V  PK++++       ++   + +E+  P+N+
Sbjct: 301 DQLQLKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAPINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+A+R E + RR+  R+  ++ R+ IL+G  +  L I+E+
Sbjct: 361 VMIGTDGRPRQKGLADILREWIAYRFETVTRRTRHRLGKVEDRIHILEGRQMVLLRIEEV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  D+PKP ++  F L+E Q + IL +RLR L +LE  +I+ EL +L  E+  +D 
Sbjct: 421 IRIIRESDEPKPALMQAFGLSERQAEDILEIRLRQLARLEAIKIEQELKDLREEQADLDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + +        RRT   E  RA      +  +  EP+TV+
Sbjct: 481 LLKSETVMRRRIIKEIETDAKQYGD-----DRRTLIQEERRAAA----EVKVVDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD-----GKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFGFKAGDVLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I       +   +L+ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTLAGHAEQNVLISTRGGNGFLAKVGDMVGRQKGG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           K FL +   ++      V  D   VA +  N +LL+F + ++  + S G+GV L   +  
Sbjct: 652 KAFLTLDEGDQPNKPAAVPEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVILMELEKN 711

Query: 696 GISDVICFKICEGLTWIDSAGRSYNR-------SENDLLGWLGKRGGVGS 738
                           +  AG    +       +      +  KR   G 
Sbjct: 712 ETL-AQALAFGPTGFVVSGAGPRSGKATEQTFTTTRAQEPYASKRARKGR 760


>gi|207725315|ref|YP_002255711.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           MolK2]
 gi|206590550|emb|CAQ37512.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           MolK2]
          Length = 783

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 272/771 (35%), Positives = 415/771 (53%), Gaps = 49/771 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPSEPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  A +ALI + +++   L +Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVATATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQIY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  +VRARW +EE+ RG W +VVTE+P      +++E+I EL   K     + +  
Sbjct: 241 ETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTP 300

Query: 304 E--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           E                        VR+V  PK++++       ++   + +E+   +N+
Sbjct: 301 EQLQLKQTLLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R E + RR+ +R+  ++ R+ IL+G  +  L I+E+
Sbjct: 361 VMIGTDGRPRQKGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIEEV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  D+PK  ++  F+LT+ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D 
Sbjct: 421 IRIIRESDEPKAALIQAFNLTDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + +        RRT   E  RA      +  +  EP+TV+
Sbjct: 481 LLKSETMMRRRIIKEIETDAKQYGD-----DRRTLIQEERRAAA----EVKVIDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD-----GKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I       +   +L+ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTLAGHAEQNVLIATRGGNGFLAKVGDMVGRQKGG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++      V  D   VA +  N +LL+F + ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPAAVAEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNR-------SENDLLGWLGKRGGVGS 738
             +   + F        +  AG    +       +      + GKR   G 
Sbjct: 712 ETLVQALAFGPA--GFAVSGAGPRSGKAAEQAFTTTRAQEPYAGKRARKGK 760


>gi|206975428|ref|ZP_03236341.1| DNA topoisomerase IV, A subunit [Bacillus cereus H3081.97]
 gi|222097050|ref|YP_002531107.1| DNA topoisomerase iv subunit a [Bacillus cereus Q1]
 gi|206746330|gb|EDZ57724.1| DNA topoisomerase IV, A subunit [Bacillus cereus H3081.97]
 gi|221241108|gb|ACM13818.1| DNA topoisomerase IV, subunit A [Bacillus cereus Q1]
          Length = 807

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFISNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|161524096|ref|YP_001579108.1| DNA topoisomerase IV subunit A [Burkholderia multivorans ATCC
           17616]
 gi|189351147|ref|YP_001946775.1| DNA topoisomerase IV subunit A [Burkholderia multivorans ATCC
           17616]
 gi|160341525|gb|ABX14611.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans ATCC
           17616]
 gi|189335169|dbj|BAG44239.1| topoisomerase IV subunit A [Burkholderia multivorans ATCC 17616]
          Length = 773

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 287/747 (38%), Positives = 426/747 (57%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGPDAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 SKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI NP+++ E+L+  I GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIASAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------------------AKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES ++  VR+V  PK+R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLLT 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  +D R+ IL+G +I +LN+DE+I IIR  D+PK  ++S
Sbjct: 380 ILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLDEVIRIIRESDEPKAALMS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LT+ Q + IL +RLR L +LE+ +I+ EL++L  EK K++ LL +       +  EI
Sbjct: 440 AFGLTDRQAEDILEIRLRQLARLEKIKIEKELESLRDEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 EADAKQYGD-----DRRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK GDSL  A    T DR++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PAGFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  +   +   LL+ SS G  FI +  ++++  + GK+F+ +         + V   
Sbjct: 611 SHLMHYYAASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLPN 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F ID++  +   G+GV L +  D   + V    I      +  AG
Sbjct: 671 ATQVACLSSGGRLLVFGIDEMKTLSGGGRGVTLMAL-DDKETLVQALAIDPAGVVLIGAG 729

Query: 717 RSYNRSENDLLG-----WLGKRGGVGS 738
           R     +  L        +GKR   G 
Sbjct: 730 RGGKVQDETLSYAGLAPHIGKRARKGR 756


>gi|73916866|gb|AAZ93301.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 211/747 (28%), Positives = 384/747 (51%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF--- 606
            L     A TT  +L+ ++ G     P   L   R       L   + + +         
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVE 592

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
               +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|206968720|ref|ZP_03229675.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH1134]
 gi|229071095|ref|ZP_04204321.1| DNA topoisomerase 4 subunit A [Bacillus cereus F65185]
 gi|229080801|ref|ZP_04213319.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-2]
 gi|229179882|ref|ZP_04307228.1| DNA topoisomerase 4 subunit A [Bacillus cereus 172560W]
 gi|229191681|ref|ZP_04318660.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 10876]
 gi|206735761|gb|EDZ52919.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH1134]
 gi|228591843|gb|EEK49683.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 10876]
 gi|228603563|gb|EEK61038.1| DNA topoisomerase 4 subunit A [Bacillus cereus 172560W]
 gi|228702535|gb|EEL55003.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-2]
 gi|228712035|gb|EEL63984.1| DNA topoisomerase 4 subunit A [Bacillus cereus F65185]
          Length = 807

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVQNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|167823285|ref|ZP_02454756.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 9]
 gi|226194517|ref|ZP_03790115.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|225933602|gb|EEH29591.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pakistan
           9]
          Length = 772

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 279/747 (37%), Positives = 413/747 (55%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  V+F   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L+  + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--------------- 304
           ++ RG W +VVTE+P      +++E+I EL   K     + +  E               
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAV 319

Query: 305 -----SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
                    VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 EADAKQYGDE-----RRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  +   +   LL+ SS G  F+ +  ++++  + GK+F+ +         + V   
Sbjct: 611 SHLLHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPD 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKEALVQALAIDAAGVVLTGTG 729

Query: 717 RSYNRSEN-----DLLGWLGKRGGVGS 738
           R     E       L   +GKR   G 
Sbjct: 730 RGGKAQEEALAGRALEPHVGKRARKGR 756


>gi|324992853|gb|EGC24773.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK405]
 gi|327462160|gb|EGF08487.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1]
          Length = 816

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 209/756 (27%), Positives = 387/756 (51%), Gaps = 27/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   + KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVGKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
             +        +  R   G  V +    +  +  ++
Sbjct: 712 SIKRMAVADIPVTSRANRGLQVLRELKTKPHRVFAA 747


>gi|228916226|ref|ZP_04079796.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228986685|ref|ZP_04146815.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229157169|ref|ZP_04285249.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 4342]
 gi|228626233|gb|EEK82980.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 4342]
 gi|228773016|gb|EEM21452.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228843424|gb|EEM88502.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 807

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|196034049|ref|ZP_03101459.1| DNA topoisomerase IV, A subunit [Bacillus cereus W]
 gi|218904723|ref|YP_002452557.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH820]
 gi|228928648|ref|ZP_04091684.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947211|ref|ZP_04109505.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123113|ref|ZP_04252320.1| DNA topoisomerase 4 subunit A [Bacillus cereus 95/8201]
 gi|195993123|gb|EDX57081.1| DNA topoisomerase IV, A subunit [Bacillus cereus W]
 gi|218538462|gb|ACK90860.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH820]
 gi|228660407|gb|EEL16040.1| DNA topoisomerase 4 subunit A [Bacillus cereus 95/8201]
 gi|228812458|gb|EEM58785.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228830967|gb|EEM76568.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 807

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAIKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|15672966|ref|NP_267140.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281491485|ref|YP_003353465.1| topoisomerase IV subunit A [Lactococcus lactis subsp. lactis KF147]
 gi|12723927|gb|AAK05082.1|AE006332_11 topoisomerase IV subunit B [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281375203|gb|ADA64716.1| Topoisomerase IV, subunit A [Lactococcus lactis subsp. lactis
           KF147]
          Length = 824

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 212/753 (28%), Positives = 392/753 (52%), Gaps = 22/753 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y++++R++Q +    PLI   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D V     +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEISGYLLADIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+  +EK++E++ GPDFPTGG I++ +  I ++Y  G+G   VR+
Sbjct: 182 NLGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGG-IIQGKGEIRKAYEKGKGRIVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   ++VTEIP+++ K+ L++KI ++ +  ++P + ++RDES  +   +  
Sbjct: 241 KVDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D  L++  +F  +D++  +  NM  +     P    +  +L+ ++ HR +V+ +
Sbjct: 301 ELKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNM-TPVQTGVLQMLRSYVKHREDVIVK 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F +   ++R+ I++GL+     +DE++A IR  +     K  +   F  TE Q +AI
Sbjct: 360 RSQFDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENIKVSFGFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L  +  ++ +++N  +  +N +  E+REVK+ F+K   
Sbjct: 420 VTLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDERTLFNLMKRELREVKKKFAKP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-SVDLSALHFKEGDS 550
             RR     EV   +    +  + E   ++V  S      S +S  S  L  +  ++ D 
Sbjct: 478 --RRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRTSPRSFASSALEEIGKRDDDE 535

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN---QDIVTAFV 607
           L    +A TT  +LL +  G     P   L   R       L   L++    + ++   +
Sbjct: 536 LLYYANAKTTQHLLLFTNLGNVIYRPIHELSDIRWKDIGEHLSQSLSNFSADEKVIFVQI 595

Query: 608 YDS--TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDHV 661
            D      LLVV+  G    +E            K   + K+   ++++ L+  V    +
Sbjct: 596 VDEFAGENLLVVTRNGQIKQIERESFSPWRTYRSKSTPYAKLKGEDDEIVLITPVQFADL 655

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            ++ EN   L F++D +P +  R  GV+  + K+G       F        +    R++ 
Sbjct: 656 MLISENGYALRFNLDDVPVLGARAAGVKAMNLKNGDKIKSAFFVNSNSWYLL--TQRAFI 713

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +           R   G  V +    +   + +
Sbjct: 714 KRVKTDDIPATSRANRGLQVLRTLKTNNHTVFA 746


>gi|325689657|gb|EGD31661.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK115]
          Length = 816

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 208/756 (27%), Positives = 388/756 (51%), Gaps = 27/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEGELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   + ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSELQDTANTIEIDTASLIVEEETYISVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSQAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
             +        +  R   G  V +    +  +  ++
Sbjct: 712 SLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFAA 747


>gi|196044554|ref|ZP_03111789.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB108]
 gi|225865578|ref|YP_002750956.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB102]
 gi|229185831|ref|ZP_04313004.1| DNA topoisomerase 4 subunit A [Bacillus cereus BGSC 6E1]
 gi|196024589|gb|EDX63261.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB108]
 gi|225786959|gb|ACO27176.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB102]
 gi|228597543|gb|EEK55190.1| DNA topoisomerase 4 subunit A [Bacillus cereus BGSC 6E1]
          Length = 807

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 216/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFDFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVQNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|73916820|gb|AAZ93278.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 820

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 213/746 (28%), Positives = 388/746 (52%), Gaps = 27/746 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA
Sbjct: 1   IQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+
Sbjct: 61  KSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+
Sbjct: 121 SEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNL 180

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++ 
Sbjct: 181 AEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSKT 239

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +    
Sbjct: 240 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 299

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS
Sbjct: 300 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILARS 358

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILN 433
            F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ 
Sbjct: 359 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVT 418

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+      
Sbjct: 419 LQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP---- 474

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDS 550
             R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D 
Sbjct: 475 --RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDR 532

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFV 607
           L     A TT  +L+ ++ G     P   L   R           + +   N++I+   V
Sbjct: 533 LIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEV 592

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDH 660
              +D       V+  G    VE  E         K   + K+  + +++  V  +  D 
Sbjct: 593 LDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDD 652

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R  
Sbjct: 653 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRGS 710

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
            +  +        R   G  V +   
Sbjct: 711 LKRVSIEEILATSRAKRGLQVLRELK 736


>gi|299783207|gb|ADJ41205.1| Topoisomerase IV subunit A [Lactobacillus fermentum CECT 5716]
          Length = 822

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 216/755 (28%), Positives = 377/755 (49%), Gaps = 28/755 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 1   MADTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L+ +D+D V+    +++ + EPVV P++ PNL  NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A + L+ +P  S++ L++++ GPDFPTG  I++ ++ I ++Y  GRG   
Sbjct: 181 PTHNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGA-IIQGKDGIKKAYETGRGRVV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E +  G   IVVTEIPY+V K++L+++I +L + K++  + D RDE+      
Sbjct: 240 VRAKTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R +D   ++  +   +D++  +  NM  +   R P  + L   L  +LA ++EV
Sbjct: 300 IAIELKRGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQR-PVRVGLKHYLASYLAFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RR+ F ++    R+ I++GL+ A   +D++IA IR     K    +    +  T  Q 
Sbjct: 359 ITRRTRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVAAYDFTPTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   ++ E   L    E    +L   K     +  E++ +K+ F+ 
Sbjct: 419 EAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEKTLDRVLKREMQAIKKEFAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                  R T  E +        +  +  E + V++S  G+I+     S    ++     
Sbjct: 479 P------RRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKRSSIRSFKASEVGDNGL 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIV 603
           +E D   +     T   + + +  G+    P         +  GE +   IDL+ ++ IV
Sbjct: 533 REDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEVIV 592

Query: 604 TAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLVVKVT 657
            A + D        +  +S G       S+    +R        +K+    ++  V    
Sbjct: 593 KAMLLDKLDLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVDYFE 652

Query: 658 ----GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
               G  V  +      L F+++ +P    R  GVR  + K+      I     +G    
Sbjct: 653 PEQAGQSVLAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQLVGISLA-GDGDHLG 711

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               R   +        +G R   G+LV     ++
Sbjct: 712 LVTQRGAFKEMAVSDLEVGARARRGNLVLHRLKKN 746


>gi|113475568|ref|YP_721629.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101]
 gi|110166616|gb|ABG51156.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101]
          Length = 873

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 257/827 (31%), Positives = 404/827 (48%), Gaps = 88/827 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++    L+   V   SL   +++ YL YA+S I  RA+PD+RDG KPVHRRII+AM E+G
Sbjct: 1   MAKKLNLLSGKVITTSLHTEMQQSYLEYAMSVIVGRALPDVRDGQKPVHRRIIYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     F+K AR+VG+V+GK HPHGDQ+VYD++VR+ Q F  RYPL+ G GNFG+ID D 
Sbjct: 61  LTPDRPFRKCARVVGDVLGKYHPHGDQAVYDAMVRMIQNFSSRYPLLDGHGNFGSIDNDP 120

Query: 126 AAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           AAA RYTE+R+  +    +L  + E  VDF + ++    EP V P++ P LL NG+SGIA
Sbjct: 121 AAAMRYTESRLASIGNEGLLTQISEAIVDFTNNFDGSQQEPKVLPAQLPFLLLNGSSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++P HN+ E+ +  +ALIDNP IS +KL E I GPDFPTGG IV S + I+++Y 
Sbjct: 181 VGMATNVPPHNLGEVVDGLIALIDNPNISDQKLFELIPGPDFPTGGEIV-STDGIIDTYT 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            GRG   +R    +E+V  G        IVVTE+P+QV K+  IEK A+L+ A +I  + 
Sbjct: 240 KGRGSIPMRGVATIEQVPTGRGRRTKTAIVVTELPFQVNKAGWIEKTADLVNAGKIEGIA 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES      V+    R  DP +++  ++  +D+ ++F   M  L     PQ + L  
Sbjct: 300 DLRDESDRSGIRVVIELKREADPSVVLHHLYRNTDLLSKFGAIMLALV-NGQPQQLSLRT 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---V 416
           +L+E+L  R E L R  +  +Q    R  I+ GLL A   +D +I I+RN          
Sbjct: 359 LLQEFLNFREETLTRHYTHELQIAQARSHIVAGLLTALKELDRVIDILRNAPDGNTAKVS 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 L+ENQ DAIL + +R L  LE+ +++ E + L+ + +++++LL    Q    + 
Sbjct: 419 FQESLGLSENQADAILAMPMRRLTGLEKQKLEEEHEQLMGKIQELENLLGDRHQLLKALK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVS--------------------------------- 503
            E+R +K  ++       RRT   +                                   
Sbjct: 479 KELRTLKRKYNDP-----RRTRIIDQIKLKNADDFASISQQKKYLEAGNKEIDIKTKGRV 533

Query: 504 --------RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG------- 548
                   ++   TL+ A    E + +  S+RG++R + +   +   +  K         
Sbjct: 534 IKSKNITVKSPILTLEAAPPPTEKVVIEFSHRGYVRRIPAKGFEKYKIDKKSHITMENSE 593

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH----------------GEAIQL 592
           D     + A T   ++LL+  GKAY L   N+ S                      +   
Sbjct: 594 DFTTNIIEATTDKTLVLLTRTGKAYPLKVNNIPSASNRSTIRNENKGVPLVTLLPPSATK 653

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            I     + I+  F+ +       L++++  G    +  S++     +G T +K+  +++
Sbjct: 654 EITDARKEIIIGQFILNEAKENKDLIMLTQNGKIKRLCLSDLSDMRNRGVTVIKLKEDDE 713

Query: 650 MKLVVK-VTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++ V    TG+ V +     +LL   ID   +P M R  +G +    +      V C  +
Sbjct: 714 LRYVSLGKTGEQVVLATSGGRLLRLQIDDEKLPLMGRAAQGSQATRLRK-QEELVGCVTL 772

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             G   +  +  SY +        +  RGG+G  V +   +      
Sbjct: 773 DIGSNLLLVSQHSYGKQIPVTALRVANRGGIGQNVFQFTRQDDILAG 819


>gi|319947112|ref|ZP_08021346.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis
           ATCC 700641]
 gi|319747160|gb|EFV99419.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis
           ATCC 700641]
          Length = 817

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 387/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + DL++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRR+++  
Sbjct: 301 ELKKDANADLILNYLFKYTDLQVNYNFNMVAID-NYTPRQVGIVPILSSYIAHRRDIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  +RR+ I++GL+     +DE+IA+IR  D     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADAKENLKISYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E  NL  +   + +++   +  +N +  E+REVK++F     
Sbjct: 420 VTLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGDERTMFNLMKKELREVKKLFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S +   +  +  ++ 
Sbjct: 478 ----RRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTSPRSFNASTVEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT  +LL +  G A   P   L   +       L   L + +        
Sbjct: 534 DELIFVEPAKTTQHLLLFTNLGNAIYRPVHELADTKWKDIGEHLSQTLTNFEQEEEILFA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
           +             + +G     E  E+        K   + K+   E+++  V  V  +
Sbjct: 594 EIVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKLKDQEDRIIAVAPVVLE 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + ++ +N   L F+I+++P +  +  GV+  + KDG     +       +  +    R 
Sbjct: 654 DIMIITKNGYGLRFNIEEVPVVGAKAAGVKAINLKDGDQVAAVFKSTTPSMYIL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +     +  R   G  V +   
Sbjct: 712 SLKRMSQDDIPVTSRAKRGLQVLRELK 738


>gi|206896281|ref|YP_002246983.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265]
 gi|206738898|gb|ACI17976.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265]
          Length = 758

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 231/742 (31%), Positives = 388/742 (52%), Gaps = 35/742 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    +   L++ Y+ YA+S I  RA+PD+RDG KPV RRII++MSE G  +   +KKS
Sbjct: 3   GIHEREITEELKQSYIDYAMSVIVGRALPDVRDGLKPVQRRIIYSMSETGSTYNNPYKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD SVYD+LVR+AQ FV RYPL+ G GNFG++DGD  AA RYTE R
Sbjct: 63  ARIVGDVLGKYHPHGDASVYDALVRMAQDFVMRYPLVDGHGNFGSMDGDPPAAMRYTEVR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+++E ++Q +D+D V++   ++    EP V P+ FP LL NG+SGIAVG++T IP HN
Sbjct: 123 LTRLSEYLVQDLDKDTVNWVPNFDGSLKEPEVLPAVFPQLLVNGSSGIAVGVSTYIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A L  + NPE +  +L+ ++ GPDFPTGG I+  ++ +V+ Y  G+G  RVR R
Sbjct: 183 LGEIIDATLHFLHNPEATSRQLMRFVKGPDFPTGGQIINPQD-LVKVYEEGKGVIRVRGR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE       +V+ EIPY V K+ L+ +IA+LI  +++  ++++RDES      V+  
Sbjct: 242 AKLEEGHGQKRRLVIYEIPYMVNKAELVSQIAQLIRDRKLSGVDEVRDESNRQGVRVVLE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +      ++  ++  + +E  F +NM  L     P  + L   +  ++  R+E + RR
Sbjct: 302 LKKGASFHHILNQLYEQTALENSFAINMVAL-KDGAPVQLTLRDYIASFVDFRKETILRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAIL 432
           + + +    +R E+++G+L A  NID +I IIRN +        ++S+  LTE Q +A+L
Sbjct: 361 TRYLLDKASKRREVVEGILKALDNIDLVIEIIRNAETTDQAKRRLMSQIGLTEVQAEAVL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++LRSL  +E+ +++ EL++LL    +   +LNS  +    IA E++ VK++F+     
Sbjct: 421 EIKLRSLVHMEKEKVEQELESLLKAIAEYTEILNSETKLLEVIAEELKHVKKLFAD---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
            +RRT              + +   E    +      I               K   +L 
Sbjct: 477 -QRRTLI-----GFSDQQTETVQAAEETFFIELLEYGIIR-----------RSKTQTNLV 519

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             +    +D ++ L+  GK + + A  +      G A+  L  + +++ +    +     
Sbjct: 520 DFIEVQGSDPVMFLTNFGKIFCISAYEIPE-SQRGVALNALFPMGNDEKV--LLLGTQNQ 576

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           +L+ +S KG        ++     +G  +  +   + + ++V VT   + V+    K L 
Sbjct: 577 ELIAISEKGKGKRFRL-DVEKIPSRGGYYFLLDPGDMVSVIVPVTSKELVVISAQGKALR 635

Query: 673 FSIDQIPEMS-RGKGVRLQS-YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
             ++ IPE   R  GV++   Y+   +    C K       +     +Y +  +      
Sbjct: 636 LDVESIPERGLRTGGVKVMRTYEGDRVVGATCLKQK---YIVTMTENAYAKRTDIDEIPK 692

Query: 731 GKRGGVGSLVPKGFPRSGKFLS 752
             RG  G  + K    +G  + 
Sbjct: 693 RNRGAAGVFIHKANETTGPVIG 714


>gi|297833850|ref|XP_002884807.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330647|gb|EFH61066.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 236/772 (30%), Positives = 380/772 (49%), Gaps = 36/772 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +    L     E Y+AYALS +  RA+PD+RDG KPVHRRI+ AM E+G+     +K
Sbjct: 98  ESRIVPFELHKEATESYMAYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYK 157

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYDSLVR+AQ F  R PLI G GNFG+ID D  AA RYTE
Sbjct: 158 KCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTE 217

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +AE  +L  +D+D VDF   ++    EP V P++ P LL NG SGIAVGMAT+IP
Sbjct: 218 CRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIP 277

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +   ALI NPE ++++LLEY+  PDFPTGG I+     ++++YR GRG   V
Sbjct: 278 PHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGG-IIMGNLGVLDAYRTGRGRVVV 336

Query: 253 RARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R +  VE  +       +++TEIPYQ  K+ L++KIAEL+  K +  + DIRDES  +  
Sbjct: 337 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 396

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  DP L++ +++  + +++ F  NM  +     P++M L  +L+ ++  R  
Sbjct: 397 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICD-GEPKLMGLKELLQAFIDFRCS 455

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+ F++    +R   ++G+++   N+DE+I +I+N            S + L+E Q
Sbjct: 456 VVERRARFKLSHAQQRKHNIEGIVVGLDNVDEVIKLIKNASSHSSASAALQSEYGLSEKQ 515

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL + LR L  LE  ++  E  +L  +  K++ LL++       I  E  E+K+ FS
Sbjct: 516 AEAILEITLRRLTTLERKKVTDESSSLTEQITKLEQLLSTRANILKLIEQEAIELKDRFS 575

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFK 546
                    +   ++   D    ++ ++       V              ++  S    +
Sbjct: 576 SPRRSMLEDSDSGDLEDIDVIPNEEMLMAISEKGYVKKMKADTFNLQHRGTIGKSVGKLR 635

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
             D++   L  H  D +L  S  G  Y+  A  +     +  G  +  ++ ++  + + +
Sbjct: 636 VDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTS 695

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                 +     LL+++  G    V           G   ++++S +++K V   + D  
Sbjct: 696 IVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDL 755

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS-------------------DV 700
           VA+  +N  +++ + D +  +SR  KGV     K+                       D 
Sbjct: 756 VAMASQNGLVVLSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSEDA 815

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              K   G   +      Y +          +   VG    K      +  +
Sbjct: 816 SIVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAE-DDRLAA 866



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            +   ++D ++ +++      L   + +            + L +   I +  +  ++ +
Sbjct: 746 WVRCCSSDDLVAMASQNGLVVLSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLR 805

Query: 614 --------------------LLVVSSKGNAFIVEESEIIANT--RKGKTFLKVSSEEKMK 651
                               LL V   G    V  S    +   R G +  K + ++++ 
Sbjct: 806 KDMEEKSEDASIVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDRLA 865

Query: 652 LVVKV---------TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDV 700
            V  V         + + V +V ++  +    +  I   SR  +GV L      G I   
Sbjct: 866 AVFVVGYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDHAGKIQSA 925

Query: 701 ICFKICEGLTW 711
                 +    
Sbjct: 926 SLISAADEEET 936


>gi|307103217|gb|EFN51479.1| hypothetical protein CHLNCDRAFT_56398 [Chlorella variabilis]
          Length = 950

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 238/810 (29%), Positives = 375/810 (46%), Gaps = 82/810 (10%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
               T  +  +    LR   E  YL+YA+S I  RA+PD+RDG KPVHRRI++AM E+GL
Sbjct: 71  EEGGTGSDSRIIETELRLEAERSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGL 130

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                F+K AR+VGEV+GK HPHGD +VYD+LVRLAQ F  R  L+ G GNFG++D D  
Sbjct: 131 QHNKPFRKCARVVGEVLGKFHPHGDTAVYDALVRLAQDFSMRVQLVDGHGNFGSLDDDPP 190

Query: 127 AAYRYTEARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AA RYTE R+  VA  + L  ++ D VDF   ++    EP V P++ PNLL NGTSGIAV
Sbjct: 191 AAMRYTECRLQAVASAMLLADLEADTVDFMPNFDASVDEPSVLPARVPNLLINGTSGIAV 250

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR----ESIVE 241
           G+AT IP HN++E+ E   ALI NP+I++ +L+ +I  PDFPTG +         +++ +
Sbjct: 251 GIATKIPPHNMREVVEGLKALIHNPDITVRQLMRHIPAPDFPTGALAARGEIILTDAVRQ 310

Query: 242 SYRLGRGGFRVRARWCVEE---VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           +Y  G+GG  +RA+  +E+    G G   +V+TE+PYQ  KS L+E+IA L+ A  +  +
Sbjct: 311 AYEEGKGGILMRAKIHIEDGSSSGSGKPLVVITELPYQTNKSALVEQIARLVDAGTLTGV 370

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            DIRDES  D   V+    R  + DL++  +   + +++RF  NM  L  G  P  + L 
Sbjct: 371 SDIRDESDRDGVRVVVEVKRGGNADLVLNQLLKHTAVQSRFSANMVALV-GATPLTLTLK 429

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-- 416
             L+ +L+ R EV+ RR+   +    +R+ ++ G + A  ++D ++  IR          
Sbjct: 430 NFLQHFLSFRCEVVERRARHDLLRAQQRLHLVDGFVTAMRDLDAVVHAIRQASDGAAALV 489

Query: 417 --MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
               S F L+  Q + +L + LR L  LE  +++ E   L A+   +  LL    +    
Sbjct: 490 VLRASPFGLSREQAEGVLGMTLRRLTSLEASKLQEEQAQLQAKIADLQDLLQRQDRILQV 549

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E  E+   F        RRT     +  +     + +I   P  VV S RG+I+   
Sbjct: 550 VTSEAEELAAKFGTP-----RRTHII--TDGEVELRHEDVIPNAPSLVVYSRRGYIKRVR 602

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
                  K   V  +    KE DSL   ++ +  D +L  +T+G+AY+L A ++  G   
Sbjct: 603 PDTFGAQKRGGVGKAGARLKEDDSLDEVVYVNDHDHLLFFTTEGRAYSLRAYDVPEGTRT 662

Query: 587 GE--AIQLLIDLNHNQDIVTAFVY--------DSTCKLLVVSSKGNAFIVEESEIIANTR 636
               A+  ++  + +  I               +   +++++ KG        +  +  R
Sbjct: 663 AVGSAVTQVLPFDKSTRIAAMVPVSGFGAALGSAEQDVVMLTRKGQIKRTALKQFTSINR 722

Query: 637 KGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
            G   + V   + ++ V   +  D V +   N     F+I ++  M R   G +  +   
Sbjct: 723 SGLVAMGVREGDSLQFVGLCSPTDSVLIAASNGSAQHFAITKLRRMGRAAVGNKSMTLSK 782

Query: 695 GGISDVICFKIC------------------------------------------EGLTWI 712
           G     +                                                G   +
Sbjct: 783 GTDIVAMAILPAGIVAEGPNDEDYLSIEGSHDMDYSEGKAAETPAESSSNEEQSAGPYLL 842

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
               +   +        L  R G G    +
Sbjct: 843 LVTQQGLGKRTCISEFRLRARTGSGIQALR 872



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 17/108 (15%)

Query: 613 KLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV--------------VKV 656
            LL+V+ +G       SE    A T  G   L+++  +++  V                 
Sbjct: 840 YLLLVTQQGLGKRTCISEFRLRARTGSGIQALRLNLGDRLAAVQDESSATKTSSSGRKPE 899

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            G  V +  +  +L+   +  +   SR  KG RL   + G        
Sbjct: 900 AGADVVLSTQQGQLVRVPVADVNIHSRFAKGHRLVKVRQGDEVVAATV 947



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/107 (11%), Positives = 29/107 (27%), Gaps = 14/107 (13%)

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI------------CFKIC 706
           ++ +V +        I +    +R G G++      G     +              K  
Sbjct: 840 YLLLVTQQGLGKRTCISEFRLRARTGSGIQALRLNLGDRLAAVQDESSATKTSSSGRKPE 899

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            G   + S  +            +  R   G  + K      + +++
Sbjct: 900 AGADVVLSTQQGQLVRVPVADVNIHSRFAKGHRLVKVRQ-GDEVVAA 945


>gi|30021697|ref|NP_833328.1| DNA topoisomerase IV subunit A [Bacillus cereus ATCC 14579]
 gi|229128868|ref|ZP_04257844.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-Cer4]
 gi|29897252|gb|AAP10529.1| Topoisomerase IV subunit A [Bacillus cereus ATCC 14579]
 gi|228654573|gb|EEL10435.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-Cer4]
          Length = 807

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKIIELQAVLQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  +++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEEEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|300704689|ref|YP_003746292.1| DNA topoisomerase iv subunit A [Ralstonia solanacearum CFBP2957]
 gi|299072353|emb|CBJ43691.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum CFBP2957]
          Length = 783

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 272/771 (35%), Positives = 415/771 (53%), Gaps = 49/771 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPSEPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  A +ALI + +++   L +Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVAAATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQIY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  +VRARW +EE+ RG W +VVTE+P      +++E+I EL   K     + +  
Sbjct: 241 ETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTP 300

Query: 304 E--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           E                        VR+V  PK++++       ++   + +E+   +N+
Sbjct: 301 EQLQLKQTLLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R E + RR+ +R+  ++ R+ IL+G  +  L I+E+
Sbjct: 361 VMIGTDGRPRQKGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIEEV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  D+PK  ++  F+LT+ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D 
Sbjct: 421 IRIIRESDEPKAALIQAFNLTDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + +        RRT   E  RA      +  +  EP+TV+
Sbjct: 481 LLKSETMMRRRIVKEIETDAKQYGD-----DRRTLIQEERRAAA----EVKVIDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD-----GKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I       +   +L+ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTLAGHAEQNVLIATRGGNGFLAKVGDMVGRQKGG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++      V  D   VA +  N +LL+F + ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPAAVAEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNR-------SENDLLGWLGKRGGVGS 738
             +   + F        +  AG    +       +      + GKR   G 
Sbjct: 712 ETLVQALAFGPA--GFAVSGAGPRSGKAAEQAFTTTRAQEPYAGKRARKGK 760


>gi|194397352|ref|YP_002037490.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae G54]
 gi|194357019|gb|ACF55467.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae G54]
          Length = 823

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 210/748 (28%), Positives = 383/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   I+KL+E++ G DFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGXDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ ++ G     P   L   R       L   + + +        
Sbjct: 534 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYV 593

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
                +D        +  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 594 EVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 654 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIEEILATSRAKRGLQVLRELK 739


>gi|12322780|gb|AAG51377.1|AC011560_9 putative DNA gyrase subunit A; 1114-7603 [Arabidopsis thaliana]
          Length = 917

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 235/763 (30%), Positives = 375/763 (49%), Gaps = 35/763 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +    L     E Y++YALS +  RA+PD+RDG KPVHRRI+ AM E+G+     +K
Sbjct: 98  ESRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYK 157

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYDSLVR+AQ F  R PLI G GNFG+ID D  AA RYTE
Sbjct: 158 KCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTE 217

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +AE  +L  +D+D VDF   ++    EP V P++ P LL NG SGIAVGMAT+IP
Sbjct: 218 CRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIP 277

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +   ALI NPE ++++LLEY+  PDFPTGG I+     ++++YR GRG   V
Sbjct: 278 PHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGG-IIMGNLGVLDAYRTGRGRVVV 336

Query: 253 RARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R +  VE  +       +++TEIPYQ  K+ L++KIAEL+  K +  + DIRDES  +  
Sbjct: 337 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 396

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  DP L++ +++  + +++ F  NM  +     P++M L  +L+ ++  R  
Sbjct: 397 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICD-GEPKLMGLKELLQAFIDFRCS 455

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+ F++    +R  I++G+++   N+DE+I +I              S + L+E Q
Sbjct: 456 VVERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQ 515

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL + LR L  LE  +   E  +L  +  K++ LL++       I  E  E+K+ FS
Sbjct: 516 AEAILEITLRRLTALERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFS 575

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFK 546
                    +   ++   D    ++ ++       V              ++  S    +
Sbjct: 576 SPRRSMLEDSDSGDLEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLR 635

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
             D++   L  H  D +L  S  G  Y+  A  +     +  G  +  ++ ++  + + +
Sbjct: 636 VDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTS 695

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                 +     LL+++  G    V           G   ++++S +++K V   + D  
Sbjct: 696 IVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDL 755

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS-------------------DV 700
           VA+  +N  + + + D +  +SR  KGV     K+                       D 
Sbjct: 756 VAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSEDA 815

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
              K   G   +      Y +          +   VG    K 
Sbjct: 816 SLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKV 858



 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 49/152 (32%), Gaps = 23/152 (15%)

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            +   ++D ++ +++      L   + +            + L +   I +  +  ++ +
Sbjct: 746 WVRCCSSDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLR 805

Query: 614 --------------------LLVVSSKGNAFIVEESEIIANT--RKGKTFLKVSSEEKMK 651
                               LL V   G    V  S    +   R G +  KV S     
Sbjct: 806 KDMEEKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKVGSGFSPF 865

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           LVV  + + V +V ++  +    +  I   SR
Sbjct: 866 LVVF-SDEQVVLVSQSGTVNRIKVRDISIQSR 896


>gi|228959780|ref|ZP_04121455.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047279|ref|ZP_04192878.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH676]
 gi|229111020|ref|ZP_04240579.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-15]
 gi|228672383|gb|EEL27668.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-15]
 gi|228724021|gb|EEL75367.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH676]
 gi|228799910|gb|EEM46852.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 807

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  +++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEEEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|73916898|gb|AAZ93317.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 211/748 (28%), Positives = 384/748 (51%), Gaps = 28/748 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW-NQIACEIREVKEIFSKSTD 491
            L+L  L   +   ++ E   L  +   + +++   ++   N +  E+REVK+ F+    
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERRTMYNLMKKELREVKKKFATP-- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 477 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ ++ G     P   L   R       L   + + +        
Sbjct: 533 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYV 592

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
                +D        +  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 593 EVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 653 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 711 GSLKRVSIEEILATSRAKRGLQVLRELK 738


>gi|47779375|gb|AAT38604.1| predicted topoisomerase IV subunit A [uncultured gamma
           proteobacterium eBACHOT4E07]
          Length = 748

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 263/751 (35%), Positives = 446/751 (59%), Gaps = 29/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++   ++SL+   EE YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD G+ 
Sbjct: 1   MPKDQSNSISLKKYAEESYLNYAMYVILDRALPNVGDGLKPVQRRILYAMSELGLDAGSK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+ D   S AA R
Sbjct: 61  YKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+++T  A L++  +    VD++  ++    EPV+FP+K P +L NGTSGIAVGMAT 
Sbjct: 121 YTESKLTNFANLLISELKSGTVDWQPNFDGSLLEPVIFPAKIPMILLNGTSGIAVGMATD 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IPSHN+ E+ +A + +++ P+  ++ LL+ I GPDF     IV S E + E Y  GRGGF
Sbjct: 181 IPSHNINEVIDATVKILEKPKSDLKDLLKIIKGPDFSNNASIVASPEELEEMYSSGRGGF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           +++A+W      +    I++  +PYQ   S+++E+IAE +I K++P++ D+ DE   +  
Sbjct: 241 KIQAQW-----MQDKNQIIINALPYQASGSKILEQIAEQMINKKLPMVVDLADEGDHEDP 295

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K+  ++ + +M  ++  +D++  + +NMN++S+   P+V  L  +LKEW+  R
Sbjct: 296 IRLVITLKSNRVNAEDVMNHLYASTDLQKNYRVNMNLISLKGGPKVFSLVDLLKEWVIFR 355

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           ++ L R+   R+  ++ R+ IL+GLL  ++++D++I IIRN D+PK  ++  F L+E Q 
Sbjct: 356 KDTLKRKLEHRLDQVNDRLHILEGLLTIFVDLDKVIKIIRNSDEPKKELIKAFKLSEIQA 415

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL +RLR L KLE+ +I++E + L+ E++ I+ +L S  +    I  E+ E+KE+F +
Sbjct: 416 NAILEIRLRQLAKLEQLKIENERNELVNERDDIEKILKSKSRLKTLIKNELNEIKELFGE 475

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 R++     + A K   ++  I  EPITVV+S  GW+RS K H +D + L ++  
Sbjct: 476 E-----RKSPIINSTNA-KIFSEEETIVTEPITVVLSKAGWVRSAKGHEIDPNTLSYRGD 529

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DSL+      +    + L ++GKAY++ + +L S RG GE I   ++ +     +++ + 
Sbjct: 530 DSLQDFARGRSNQLAIFLDSNGKAYSIQSHSLPSARGMGEPITGRLNADSGVQFISSVIG 589

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVVGE 666
               K L++++ G  +I E   +I+N + G+ F+K+    KM   + V  +  H+A V  
Sbjct: 590 VEGNKFLIMNTAGYGYISEYQNMISNKKTGRAFMKLPDNAKMLKAIPVKDNHTHIAAVSN 649

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRSYN 720
             KLLIF+I+++P + +GKG ++ +     ++              +    I+   RS  
Sbjct: 650 IGKLLIFNIEELPILGKGKGNKIINIPKDKLAAGEEFMAHAQLLADDSSLKIEVGKRSVT 709

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               D   ++  R   G        + GK +
Sbjct: 710 LKPKDWSEYVLSRAKRGK-------KVGKLI 733


>gi|6630561|gb|AAF19580.1|AC011708_23 putative DNA gyrase A subunit [Arabidopsis thaliana]
          Length = 899

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 235/763 (30%), Positives = 375/763 (49%), Gaps = 35/763 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +    L     E Y++YALS +  RA+PD+RDG KPVHRRI+ AM E+G+     +K
Sbjct: 80  ESRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYK 139

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYDSLVR+AQ F  R PLI G GNFG+ID D  AA RYTE
Sbjct: 140 KCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTE 199

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +AE  +L  +D+D VDF   ++    EP V P++ P LL NG SGIAVGMAT+IP
Sbjct: 200 CRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIP 259

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +   ALI NPE ++++LLEY+  PDFPTGG I+     ++++YR GRG   V
Sbjct: 260 PHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGG-IIMGNLGVLDAYRTGRGRVVV 318

Query: 253 RARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R +  VE  +       +++TEIPYQ  K+ L++KIAEL+  K +  + DIRDES  +  
Sbjct: 319 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 378

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  DP L++ +++  + +++ F  NM  +     P++M L  +L+ ++  R  
Sbjct: 379 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICD-GEPKLMGLKELLQAFIDFRCS 437

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+ F++    +R  I++G+++   N+DE+I +I              S + L+E Q
Sbjct: 438 VVERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQ 497

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL + LR L  LE  +   E  +L  +  K++ LL++       I  E  E+K+ FS
Sbjct: 498 AEAILEITLRRLTALERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFS 557

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFK 546
                    +   ++   D    ++ ++       V              ++  S    +
Sbjct: 558 SPRRSMLEDSDSGDLEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLR 617

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
             D++   L  H  D +L  S  G  Y+  A  +     +  G  +  ++ ++  + + +
Sbjct: 618 VDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTS 677

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                 +     LL+++  G    V           G   ++++S +++K V   + D  
Sbjct: 678 IVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDL 737

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS-------------------DV 700
           VA+  +N  + + + D +  +SR  KGV     K+                       D 
Sbjct: 738 VAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSEDA 797

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
              K   G   +      Y +          +   VG    K 
Sbjct: 798 SLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKV 840



 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 49/152 (32%), Gaps = 23/152 (15%)

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            +   ++D ++ +++      L   + +            + L +   I +  +  ++ +
Sbjct: 728 WVRCCSSDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLR 787

Query: 614 --------------------LLVVSSKGNAFIVEESEIIANT--RKGKTFLKVSSEEKMK 651
                               LL V   G    V  S    +   R G +  KV S     
Sbjct: 788 KDMEEKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKVGSGFSPF 847

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           LVV  + + V +V ++  +    +  I   SR
Sbjct: 848 LVVF-SDEQVVLVSQSGTVNRIKVRDISIQSR 878


>gi|184155380|ref|YP_001843720.1| topoisomerase IV subunit A [Lactobacillus fermentum IFO 3956]
 gi|183226724|dbj|BAG27240.1| topoisomerase IV subunit A [Lactobacillus fermentum IFO 3956]
          Length = 825

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 216/757 (28%), Positives = 377/757 (49%), Gaps = 28/757 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             + +  ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  + 
Sbjct: 2   TPVADTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA 
Sbjct: 62  KGFRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++A  +L+ +D+D V+    +++ + EPVV P++ PNL  NG +GI+ G AT
Sbjct: 122 RYTEARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP+HN+ E+ +A + L+ +P  S++ L++++ GPDFPTG  I++ ++ I ++Y  GRG 
Sbjct: 182 EIPTHNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGA-IIQGKDGIKKAYETGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA+  +E +  G   IVVTEIPY+V K++L+++I +L + K++  + D RDE+    
Sbjct: 241 VVVRAKTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R +D   ++  +   +D++  +  NM  +   R P  + L   L  +LA ++
Sbjct: 301 LRIAIELKRGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQR-PVRVGLKHYLASYLAFQK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
           EV+ RR+ F ++    R+ I++GL+ A   +D++IA IR     K    +    +  T  
Sbjct: 360 EVITRRTRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVAAYDFTPT 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AI+ L+L  L   +   ++ E   L    E    +L   K     +  E++ +K+ F
Sbjct: 420 QAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEKTLDRVLKREMQAIKKEF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSAL 543
           +        R T  E +        +  +  E + V++S  G+I+     S    ++   
Sbjct: 480 ANP------RRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKRSSIRSFKASEVGDN 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQD 601
             +E D   +     T   + + +  G+    P         +  GE +   IDL+ ++ 
Sbjct: 534 GLREDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEV 593

Query: 602 IVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLVVK 655
           IV A + D        +  +S G       S+    +R        +K+    ++  V  
Sbjct: 594 IVKAMLLDKLDLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVDY 653

Query: 656 VT----GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710
                 G  V  +      L F+++ +P    R  GVR  + K+      I     +G  
Sbjct: 654 FEPEQAGQSVLAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQLVGISLA-GDGDH 712

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 R   +        +G R   G+LV     ++
Sbjct: 713 LGLVTQRGAFKEMAVSDLEVGARARRGNLVLHRLKKN 749


>gi|322385168|ref|ZP_08058815.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus cristatus
           ATCC 51100]
 gi|321270792|gb|EFX53705.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus cristatus
           ATCC 51100]
          Length = 816

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 212/756 (28%), Positives = 391/756 (51%), Gaps = 27/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++ A
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYA 593

Query: 606 FVYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
            + D          +  G    VE  E         K   F K+   E+++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEEDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
             +        +  R   G  V +    +  +  ++
Sbjct: 712 SIKRMAVADIPVTSRANRGLQVLRELKTKPHRVFAA 747


>gi|296113890|ref|YP_003627828.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis RH4]
 gi|295921584|gb|ADG61935.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis RH4]
 gi|326561441|gb|EGE11791.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 46P47B1]
          Length = 745

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 267/742 (35%), Positives = 436/742 (58%), Gaps = 15/742 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   S+    E  YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   A  KKS
Sbjct: 4   QIDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G+ D   S AA RYTEA
Sbjct: 64  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
            M++ A+++L  +++  VD++D ++   SEPV  P++ PN+L NGT+GIAVGMAT IP H
Sbjct: 124 NMSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + L+ NPE+S ++L++ +  PD PT   I+  +  ++  Y  G+G +++RA
Sbjct: 184 NLHEVVKVCIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIV 312
            +      + +  +++  +PYQV  ++++E+IA+L++ K++P + +IRDES      RIV
Sbjct: 244 TYH--TDPKQNHLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K   L+ D +M  +F  +D+ET + +NMN++ +   P+V  L  IL EWL+ R+ V+
Sbjct: 302 IELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR  +R+  I+ R+ IL GLLIAYLNIDEII IIR  + PK  +++RF LT+ Q +AIL
Sbjct: 362 IRRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAIL 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++LR L KLEE ++ +E D L AE+  I   LN+ +     +  E+    +    +   
Sbjct: 422 DIKLRQLAKLEEIELTAEHDRLEAERLLISEQLNNPEMLTKLLIDELTADAKTHGDA--- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RR+   + + +        +   EPIT ++S  GWIR+ K H  D + ++++ GD+  
Sbjct: 479 --RRSPVVQRAESSSLKAVDLI-ASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYL 535

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                 +T+R++L+   G++Y L + +L S R  G+ I  L++L     I     Y+ T 
Sbjct: 536 THALGKSTERLILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTN 595

Query: 613 ---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG-ENR 668
               +L+ SS G  FI + + +    + GK+ + ++    + +VV    D +  V   N 
Sbjct: 596 GSPNVLMASSLGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNG 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            LLIF+ D++P++++GKG +L + K G     I          I +  R+   + ND+  
Sbjct: 656 NLLIFASDELPKLAKGKGNKLANLKAGETITAITALSDTDALVITAGKRTLTLNPNDIAN 715

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
           ++  R   G+ +PKGF +    
Sbjct: 716 YIAHRANRGNPLPKGFGKVSNM 737


>gi|73916852|gb|AAZ93294.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 213/747 (28%), Positives = 390/747 (52%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|227515150|ref|ZP_03945199.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|227086482|gb|EEI21794.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
          Length = 825

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 216/757 (28%), Positives = 377/757 (49%), Gaps = 28/757 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             + +  ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  + 
Sbjct: 2   TPVADTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA 
Sbjct: 62  KGFRKSAKAVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++A  +L+ +D+D V+    +++ + EPVV P++ PNL  NG +GI+ G AT
Sbjct: 122 RYTEARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP+HN+ E+ +A + L+ +P  S++ L++++ GPDFPTG  I++ ++ I ++Y  GRG 
Sbjct: 182 EIPTHNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGA-IIQGKDGIKKAYETGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA+  +E +  G   IVVTEIPY+V K++L+++I +L + K++  + D RDE+    
Sbjct: 241 VVVRAKTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R +D   ++  +   +D++  +  NM  +   R P  + L   L  +LA ++
Sbjct: 301 LRIAIELKRGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQR-PVRVGLKHYLASYLAFQK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
           EV+ RR+ F ++    R+ I++GL+ A   +D++IA IR     K    +    +  T  
Sbjct: 360 EVITRRTRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVAAYDFTPT 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AI+ L+L  L   +   ++ E   L    E    +L   K     +  E++ +K+ F
Sbjct: 420 QAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEKTLDRVLKREMQAIKKEF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSAL 543
           +        R T  E +        +  +  E + V++S  G+I+     S    ++   
Sbjct: 480 ANP------RRTQIEDTVQKLTVDTRVTVADEEVIVLVSAAGYIKRSSIRSFKASEVGDN 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQD 601
             +E D   +     T   + + +  G+    P         +  GE +   IDL+ ++ 
Sbjct: 534 GLREDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEV 593

Query: 602 IVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLVVK 655
           IV A + D        +  +S G       S+    +R        +K+    ++  V  
Sbjct: 594 IVKAMLLDKLDLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVDY 653

Query: 656 VT----GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710
                 G  V  +      L F+++ +P    R  GVR  + K+      I     +G  
Sbjct: 654 FEPEQAGQSVLAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQLVGISLA-GDGDH 712

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 R   +        +G R   G+LV     ++
Sbjct: 713 LGLVTQRGAFKEMAVSDLEVGARARRGNLVLHRLKKN 749


>gi|270292573|ref|ZP_06198784.1| topoisomerase IV, subunit A [Streptococcus sp. M143]
 gi|270278552|gb|EFA24398.1| topoisomerase IV, subunit A [Streptococcus sp. M143]
          Length = 826

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 210/748 (28%), Positives = 382/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFEKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ ++ G     P   L   R       L   + + +        
Sbjct: 534 DRLIFVQTAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYA 593

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
                +D        +  G    VE  E         K   + K+  E +++  V  +  
Sbjct: 594 EVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++ +N   L F+I+++P +  +  GV+  + K                  +    R
Sbjct: 654 DDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKANDALQAAFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIEEIPATSRAKRGLQVLRELK 739


>gi|229146163|ref|ZP_04274538.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST24]
 gi|296504101|ref|YP_003665801.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis BMB171]
 gi|228637222|gb|EEK93677.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST24]
 gi|296325153|gb|ADH08081.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis BMB171]
          Length = 807

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|242373651|ref|ZP_04819225.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           M23864:W1]
 gi|242348619|gb|EES40221.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           M23864:W1]
          Length = 800

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 226/756 (29%), Positives = 411/756 (54%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  F   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGG I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVSQLMKYIKGPDFPTGG-IIQGVDGIKKAYESGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   EE+  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEELRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + +   ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ F  TE Q +
Sbjct: 359 TNRTRYDLDHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEFDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E D L A  +K+ ++L+        I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEEEHDELEALIKKLRNILDDHDALLTVIKDELNEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ M+  E + + I+  G+I+   + S     ++ +  K
Sbjct: 479 ------RLSAIEAEISEIKIDKEVMVPSEEVILSITRHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P      +  +  G+ +  ++ ++ ++ ++ 
Sbjct: 533 DGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    ++     ++ +  G       S+       K    +KV  ++++  VV++  D 
Sbjct: 593 VYNEKDFNHDAFYVMATRNGMIKKSSVSQFKTTRFNKPLVGMKVKDKDEIINVVRLESDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S  ++ +   R  GV+  + KD     V+  ++ E  + I    R 
Sbjct: 653 LITVITNKGMSLTYSTAELSDTGLRAAGVKSINLKDEDYV-VMTEEVNESDSIIMVTQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +    KR   G  + K   ++  + + +
Sbjct: 712 AIKRISYKVLQAAKRAQRGITLLKELKKNPHRIVDA 747


>gi|86604741|ref|YP_473504.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab]
 gi|86553283|gb|ABC98241.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab]
          Length = 849

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 230/762 (30%), Positives = 384/762 (50%), Gaps = 29/762 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V    L+  ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K A
Sbjct: 23  VIVTDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 82

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGDQ+VYD+LVR+AQ F  RYPL++G GNFG++D D  AA RYTE R+
Sbjct: 83  RVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRL 142

Query: 137 TQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
            +++   +LQG+ E  VDF   ++   +EP V P++ P LL NG++GIAVGMAT+IP HN
Sbjct: 143 AELSHTALLQGISEAIVDFMPNFDGSQAEPTVLPARLPILLLNGSAGIAVGMATNIPPHN 202

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALID P++S E+LL +I GPDFPTGG IV+  + I E+Y  GRG   +R  
Sbjct: 203 LGEVVDGLLALIDEPDLSPEELLRWIPGPDFPTGGQIVDG-QGIREAYLTGRGSITLRGV 261

Query: 256 WCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
              EE+  G        ++++E PYQV K+  +EK+AEL+   R+  + D+RDES     
Sbjct: 262 ARFEEIQPGRGRHRRPALIISEFPYQVNKAAWLEKVAELVAQDRLSGIADLRDESDRSGM 321

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  +P  +++ ++ L+ +++ F + +  L     PQ + L  IL+ +L  R  
Sbjct: 322 RVVVELKREANPQAVLQQLYKLTPLQSTFGVILLALV-EGKPQQLSLKQILQHFLQFREA 380

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
            L R     +Q + R+ E + G+++A  +++ +I ++R        K  + +R   T  Q
Sbjct: 381 TLKRMFRAELQQVQRKAEEVAGMVLALADLEGVIDLLRQAPDSATAKAQLQTRLGCTSQQ 440

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + IL + LR L  LE  ++  E   L A   ++  LL   ++  N +  E+R +K+ F+
Sbjct: 441 AETILAMPLRRLTTLERERLYQEQAELQARIAELQGLLQDRRKLLNYLKKELRHLKKTFA 500

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                     +  E   A     +     +  + +          L       +    + 
Sbjct: 501 DPRRTQILSASELEAEAAQIPGGEAGEDSRFLLQLTRKGYVRRLPLPGPRSRSNPAQREL 560

Query: 548 GDSLKIALHAHTTDRIL-LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           G+   ++L   T ++ + +L+  G+A+T+P   +    G    + L+  L + + IV AF
Sbjct: 561 GEDTLVSLECVTPEQAILVLTASGRAFTVPIEGIPLSTGSSRGVPLVTLLPNPEPIVAAF 620

Query: 607 VYDS-----------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
             D               L+V+S +G    V  +E++  +++G   LK+   +++     
Sbjct: 621 PLDPVRVSGAEHSPGEASLVVLSRQGRIKRVALAELVGLSQRGAAVLKLKEGDELGWAAL 680

Query: 656 VTGDH----VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
               H    V +     ++L    +QIP M R   G              +     +G+ 
Sbjct: 681 WHPGHQGYSVVLATSGGRVLRLDAEQIPLMGRAAMGSPALRLGRTEQIVGMALLPPQGIL 740

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + ++   Y +        + ++G VG        +    + 
Sbjct: 741 VL-ASRSGYLKRLPLGEIPILEQGKVGVSAFHFSNKGDGLVG 781



 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
               H    ++L ++ G+   L A  +             + L   + IV   +      
Sbjct: 681 WHPGHQGYSVVLATSGGRVLRLDAEQIPLMGRAAMGSP-ALRLGRTEQIVGMALLPPQGI 739

Query: 614 LLVVSSKGNAFIVEESEI--IANTRKGKTFLKV-SSEEKMKLVVKVTGD-------HVAV 663
           L++ S  G    +   EI  +   + G +     +  + +  +V    D        V V
Sbjct: 740 LVLASRSGYLKRLPLGEIPILEQGKVGVSAFHFSNKGDGLVGLVGFPPDLAAHPHLQVDV 799

Query: 664 VGENRKLLIFSIDQIPEMSRGKG----VRLQSYKD 694
           + E+ ++  FS ++IP   R  G    V+ +  ++
Sbjct: 800 IAESERVHSFSPEEIPLQGRSGGGSLLVKGEQVRE 834


>gi|21230852|ref|NP_636769.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769149|ref|YP_243911.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112458|gb|AAM40693.1| topoisomerase IV subunit A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574481|gb|AAY49891.1| topoisomerase IV subunit A [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 747

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 271/755 (35%), Positives = 431/755 (57%), Gaps = 21/755 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+D+P+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLHLLDDPDATVAQLCEHVLGPDYPTNAEIITPVADLRAIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +      +    IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATY-----KKEHANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV+++RF+
Sbjct: 356 EWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLIARFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+E+I S+L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKEREQILSILGSKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA-----RRSPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T  +  L +DG+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLAAVRSRSTYHVAFLDSDGRAYSTLVHTLPSARGNGEPLTGRFSPASGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 ++  + ++ SS G  F+     +    + GK  L +++   +    +V     D
Sbjct: 590 QVLASGENNARFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGAHVLTPAQVLNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI----SDVICFKICEGLTWIDSA 715
            +  V     LL  +   +PE+ +GKG +L       +       +          + S 
Sbjct: 650 RIVAVTSAGNLLAITASDLPELDKGKGNKLIEIPKAKLGTERVVAVAAVAPGNTLLVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R  + S  DL  ++G R   G+L+P+G+ +    
Sbjct: 710 ARVMSLSFKDLDTYVGARASRGALLPRGWQKVDGL 744


>gi|229151791|ref|ZP_04279990.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1550]
 gi|228631604|gb|EEK88234.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1550]
          Length = 807

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEIPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|328946256|gb|EGG40400.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1087]
          Length = 816

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 208/756 (27%), Positives = 387/756 (51%), Gaps = 27/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     +  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTIEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTRNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
             +        +  R   G  V +    +  +  ++
Sbjct: 712 SLKRMAVADIPVTSRANRGLQVLRELKAKPHRVFAA 747


>gi|324991105|gb|EGC23039.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK353]
          Length = 816

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 209/747 (27%), Positives = 384/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANSELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RISELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDRVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +        +  R   G  V +   
Sbjct: 712 SLKRMAVADIPVTSRANRGLQVLRELK 738


>gi|84496203|ref|ZP_00995057.1| DNA gyrase subunit A [Janibacter sp. HTCC2649]
 gi|84382971|gb|EAP98852.1| DNA gyrase subunit A [Janibacter sp. HTCC2649]
          Length = 816

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 220/782 (28%), Positives = 385/782 (49%), Gaps = 40/782 (5%)

Query: 1   MGVDNISNSNTLVEEN---VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M     SN     +EN   V  + +   ++  +L Y++S I  RA+PD+RDG KPV RRI
Sbjct: 1   MAKRTTSNPQADDDENNGHVVDIDVGIEMQNAFLEYSVSVIHSRALPDVRDGLKPVQRRI 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + +MSEMGL       KS+R+VG+V+GK HPHGD ++YD+LVR+AQPF  R PL+ G GN
Sbjct: 61  LFSMSEMGLRPDRGHVKSSRVVGDVMGKYHPHGDTAIYDALVRMAQPFTMRLPLVDGHGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG++D D  AA RYTEAR+   A ++  G+DED VDF   Y+++  +P V P+ +PNLL 
Sbjct: 121 FGSLD-DGPAASRYTEARLAPAALVMTTGLDEDTVDFVPNYDDQLLQPGVLPAAYPNLLV 179

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG SGIAVG ATS+P HN+ E+  AA  LI +P+ S++ L++++ GPD P GG IV   +
Sbjct: 180 NGVSGIAVGFATSMPPHNLVEVISAARHLIAHPDCSLDDLMKFVPGPDLPLGGKIV-GLD 238

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y  G+G F+ RA   +E++      IVVTE+PY V   ++IE++  L+  K++  
Sbjct: 239 GIRDAYLTGKGTFKTRATTRIEKLTPRKSGIVVTELPYLVGPEKVIERMKTLVQGKKLQG 298

Query: 298 LEDIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + D++D +       ++       +P+ ++E +F L+ ME  F +N   L     PQ + 
Sbjct: 299 ISDVKDLTDRKHGLRMVIEVKNGFNPEAVLEQLFKLTPMEDSFGINNVALVD-GQPQTLG 357

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--- 413
           L  +L+ ++  R  V+ RR+++R++    ++ ++ GLLIA L+IDE+I +IR  D     
Sbjct: 358 LKDLLRHYVEFRILVVRRRTAYRLRKAQDQLHLVLGLLIAILDIDEVIQLIRTSDDTATA 417

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  +   F L+E Q + IL L+LR L K    +++++ D L  + ++++++L   K    
Sbjct: 418 RQRLRDVFDLSELQANYILELQLRRLTKFSRLELENQRDELEKQIQELEAILGDEKLLQR 477

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            ++ E+ +V + +        RRT   E +    +      +  +P  V++S+ G +   
Sbjct: 478 MVSTELADVAKKYGTP-----RRTVLLESAGNPVSAAAPLEVSDDPCWVLLSSTGLLART 532

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG-------- 585
            +     +     + D++  A+       + L+++ G+   + A  L +           
Sbjct: 533 SNAEPIPAEGPRAKHDAVISAVRTTARGEVGLVTSRGRMIRISALELPTLPPLGGAPSLS 592

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            G  +   +DL   ++ +T    D     L + +++G    V   +           + +
Sbjct: 593 GGAPLAAYVDLPRGEEPITVVSLDPDGPGLALGTAQGIVKRVTSDQ---PKSHDWEVISL 649

Query: 645 SSEEKMKLV--VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDV 700
              + +     V    + +  V  + +LL F    +    R G G+       G  ++  
Sbjct: 650 KDGDTVVGAGQVVTGDEDLVFVTSDAQLLRFPAHAVRPQGRSGGGIAGVRLTAGERVAFF 709

Query: 701 ICFKICEGLTWIDSAGR---------SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                      + ++G             ++          RG  G    +        +
Sbjct: 710 GVVDPAREAVVVTASGSADALPGTQPGAIKATPLSEYPGKGRGTGGVRAHRFLKGENTLV 769

Query: 752 SS 753
            +
Sbjct: 770 LA 771


>gi|170733716|ref|YP_001765663.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia MC0-3]
 gi|254247560|ref|ZP_04940881.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Burkholderia cenocepacia PC184]
 gi|124872336|gb|EAY64052.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Burkholderia cenocepacia PC184]
 gi|169816958|gb|ACA91541.1| DNA topoisomerase IV, A subunit [Burkholderia cenocepacia MC0-3]
          Length = 773

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 287/765 (37%), Positives = 429/765 (56%), Gaps = 39/765 (5%)

Query: 3   VDNISN-SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN S+   +       A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM
Sbjct: 2   DDNTSDLFASPDAPESDALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T +A+L+L  +D+  VDF   Y+    EP   PS+ P +L NG S
Sbjct: 122 DGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGAS 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+AT IPSHN++E+  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  
Sbjct: 182 GIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAA 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---------- 291
           +Y  GRG  +VRA+W +E++ RG W +VVTE+P      +++E+I EL            
Sbjct: 242 AYETGRGSLKVRAKWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTL 301

Query: 292 --------AKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + LL+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   L
Sbjct: 302 TPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATL 361

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P    L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNID
Sbjct: 362 NLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNID 421

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D+PK  ++S F L+E Q + IL +RLR L +LE+ +I+ ELD L  EK K+
Sbjct: 422 EVIRIIRESDEPKAALMSAFGLSERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL +       +  EI    + +        RRT   +  RA      +A +  EP+T
Sbjct: 482 EELLANESAMKRLMIKEIEADAKQYGD-----DRRTLIQQEKRATF----EAKVVDEPVT 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV+S +GW+R+LK H +D +   FK GD L  A    T DR++   + G+ Y++    L 
Sbjct: 533 VVVSQKGWVRALKGHGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLP 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG G  +  LI+L     ++  +   +  +LL+ SS G  F+ +  ++++  + GK+F
Sbjct: 593 GGRGDGVPVTSLIELESGSHLMHYYAAPADQQLLLASSNGFGFLAKVGDMVSRLKAGKSF 652

Query: 642 LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGIS 698
           + + +       + V      VA +    +LL+F +D++  +   G+GV L +  D   +
Sbjct: 653 MTIDAGAVPLAPMPVLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DDKET 711

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
            V    I      +   GR     +  L        +GKR   G 
Sbjct: 712 LVQALAIDPSGVVLIGTGRGGKVQDETLSYAGLAPHIGKRARKGR 756


>gi|262282824|ref|ZP_06060591.1| DNA topoisomerase IV subunit A [Streptococcus sp. 2_1_36FAA]
 gi|262261076|gb|EEY79775.1| DNA topoisomerase IV subunit A [Streptococcus sp. 2_1_36FAA]
          Length = 816

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 209/747 (27%), Positives = 383/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+    +++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEGDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLVAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +        +  R   G  V +   
Sbjct: 712 SLKRMAVADIPVTSRANRGLQVLRELK 738


>gi|260662107|ref|ZP_05863003.1| DNA topoisomerase IV, A subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553490|gb|EEX26382.1| DNA topoisomerase IV, A subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 822

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 216/755 (28%), Positives = 378/755 (50%), Gaps = 28/755 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 1   MADTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L+ +D+D V+    +++ + EPVV P++ PNL  NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A + L+ +P  S++ L++++ GPDFPTG  I++ ++ I ++Y  GRG   
Sbjct: 181 PTHNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGA-IIQGKDGIKKAYETGRGRVV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E +  G   IVVTEIPY+V K++L+++I +L + K++  + D RDE+      
Sbjct: 240 VRAKTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R +D   ++  +   +D++  +  NM  ++  R P  + L   L  +LA ++EV
Sbjct: 300 IAIELKRGVDAQGVLNYLLKNTDLQINYNFNMVAINDQR-PVRVGLKHYLASYLAFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RR+ F ++    R+ I++GL+ A   +D++IA IR     K    +    +  T  Q 
Sbjct: 359 ITRRTRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVAAYDFTPTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   ++ E   L    E    +L   K     +  E++ +K+ F+ 
Sbjct: 419 EAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEKTLDRVLKREMQAIKKEFAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                  R T  E +        +  +  E + V++S  G+I+     S    ++     
Sbjct: 479 P------RRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKRSSIRSFKASEVGDNGL 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIV 603
           +E D   +     T   + + +  G+    P         +  GE +   IDL+ ++ IV
Sbjct: 533 REDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEVIV 592

Query: 604 TAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLVVKVT 657
            A + D        +  +S G       S+    +R        +K+    ++  V    
Sbjct: 593 KAMLLDKLDLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVDYFE 652

Query: 658 ----GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
               G  V  +      L F+++ +P    R  GVR  + K+      I     +G    
Sbjct: 653 PEQAGQSVLAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQLVGISLA-GDGDHLG 711

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               R   +        +G R   G+LV     ++
Sbjct: 712 LVTQRGAFKEMAVSDLEVGARARRGNLVLHRLKKN 746


>gi|325687507|gb|EGD29528.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK72]
          Length = 816

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 208/756 (27%), Positives = 387/756 (51%), Gaps = 27/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A T   +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSPAKTIQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
             +        +  R   G  V +    +  +  ++
Sbjct: 712 SLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFAA 747


>gi|218234483|ref|YP_002368409.1| DNA topoisomerase IV subunit A [Bacillus cereus B4264]
 gi|218162440|gb|ACK62432.1| DNA topoisomerase IV, A subunit [Bacillus cereus B4264]
          Length = 807

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKKLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|73916868|gb|AAZ93302.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916880|gb|AAZ93308.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916886|gb|AAZ93311.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916892|gb|AAZ93314.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916894|gb|AAZ93315.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916910|gb|AAZ93323.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916918|gb|AAZ93327.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/747 (28%), Positives = 390/747 (52%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|312863329|ref|ZP_07723567.1| DNA topoisomerase IV, A subunit [Streptococcus vestibularis F0396]
 gi|311100865|gb|EFQ59070.1| DNA topoisomerase IV, A subunit [Streptococcus vestibularis F0396]
          Length = 818

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 205/747 (27%), Positives = 384/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  
Sbjct: 301 ELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNF-TPRQVGLQKILSSYIAHRRDIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E  +L  +   + +++   +  +N +  E+R++K+ F     
Sbjct: 420 VTLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGDERTMFNVMKRELRDIKKKFGND-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V I+  G+++     S +   +  +  ++ 
Sbjct: 478 ----RRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASTIDEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L +   A TT  +L+ +        P   L   R           + +L+ +++++ A
Sbjct: 534 DDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNLSKDEEVLYA 593

Query: 606 FVYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
            + D   T   L  +  G     E  E         K   + K+    + +  V  +  D
Sbjct: 594 EILDDFETGTYLAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKDNSDFIVTVTPIQLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + ++ +    L F+ D++P +  +  GV+  + KD      +     +    +    R+
Sbjct: 654 DIMIITQKGYALRFNADEVPVVGAKAAGVKAINLKDDDTVQAVFVANTQSFYLL--TQRA 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +          KR G G  V +   
Sbjct: 712 SLKRVATADIPQAKRAGRGLQVLRELK 738


>gi|332366844|gb|EGJ44585.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1059]
          Length = 816

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 211/747 (28%), Positives = 388/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VSLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSELQDTANTIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++ A
Sbjct: 534 DRLIFVSSAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYA 593

Query: 606 FVYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
            + D          +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +        +  R   G  V +   
Sbjct: 712 SLKRMAVADIPVTSRANRGLQVLRELK 738


>gi|188992297|ref|YP_001904307.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734057|emb|CAP52263.1| Topoisomerase IV subunit A [Xanthomonas campestris pv. campestris]
          Length = 747

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 268/755 (35%), Positives = 430/755 (56%), Gaps = 21/755 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+D+P+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLHLLDDPDATVAQLCEHVLGPDYPTSAEIITPVADLRAIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +      +    IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATY-----KKEHANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S      R+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV+++RF+
Sbjct: 356 EWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLIARFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ ++ ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQLMAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA-----RRSPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T  +  L +DG+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLAAVRSRSTYHVAFLDSDGRAYSTLVHTLPSARGNGEPLTGRFSPASGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 ++  + ++ SS G  F+     +    + GK  L +++   +    +V     D
Sbjct: 590 QVLASGENNARFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGAHVLTPAQVLNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI----SDVICFKICEGLTWIDSA 715
            +  V     LL  +   +PE+ +GKG +L       +       +          + S 
Sbjct: 650 RIVAVTSAGNLLAITASDLPELDKGKGNKLIEIPKAKLGTERVVAVAAVAPGNTLLVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R  + S  DL  ++G R   G+L+P+G+ +    
Sbjct: 710 ARVMSLSFKDLDTYVGARASRGALLPRGWQKVDGL 744


>gi|306825060|ref|ZP_07458402.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432496|gb|EFM35470.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 826

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 213/748 (28%), Positives = 385/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQYIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGA-IIQGRDEIQKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVSILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSHFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKTAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + +   N++I+  
Sbjct: 534 DRLIFVQVAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D        +  G    VE  E         K   + K+  E +++  V  +  
Sbjct: 594 EVLDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V  N   L F+I+++P +  +  GV+  + K                  +    R
Sbjct: 654 DDVLLVSRNGYALRFNIEEVPVVGAKAAGVKAMNLKAEDELQAAFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIDEIPATSRAKRGLQVLRELK 739


>gi|327489842|gb|EGF21632.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1058]
          Length = 816

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 208/756 (27%), Positives = 388/756 (51%), Gaps = 27/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     +  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTVEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKMGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
             +        +  R   G  V +    +  +  ++
Sbjct: 712 SLKRMAIADIPVTSRANRGLQVLRELKTKPHRVFAA 747


>gi|315613328|ref|ZP_07888237.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           ATCC 49296]
 gi|315314563|gb|EFU62606.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           ATCC 49296]
          Length = 826

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 212/748 (28%), Positives = 382/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGA-IIQGRDEINKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ +T G     P   L   R       L   + + +        
Sbjct: 534 DRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYA 593

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
                +D        +  G    VE  E         K   + K+  E +++  V  +  
Sbjct: 594 EVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIRL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++ +N   L F+I+++P +  +  GV+  + K                  +    R
Sbjct: 654 DDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKADDALQAAFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIEEIPATSRAKRGLQVLRELK 739


>gi|73916890|gb|AAZ93313.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 213/747 (28%), Positives = 390/747 (52%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHG+ S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGNSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|14531024|gb|AAK63177.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 211/748 (28%), Positives = 387/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA  VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAESVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTGG I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGG-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     +  +  ++ 
Sbjct: 478 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASAIDEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A T   +L+ ++ G     P   L   R           + +   N++I+  
Sbjct: 534 DRLIFGQSAKTIQHLLMFTSLGNVIYPPIHELADIRWKDIGEHLSQTITNFETNEEILYV 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D        +  G    VE  E         K   + K+  E +++  V  +  
Sbjct: 594 EVLDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++ +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 654 DDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSVEEIPATSRAKRGLQVLRELK 739


>gi|53726260|ref|YP_103774.1| DNA topoisomerase IV subunit A [Burkholderia mallei ATCC 23344]
 gi|67644033|ref|ZP_00442776.1| DNA topoisomerase IV, A subunit [Burkholderia mallei GB8 horse 4]
 gi|121601347|ref|YP_992041.1| DNA topoisomerase IV subunit A [Burkholderia mallei SAVP1]
 gi|124385940|ref|YP_001028485.1| DNA topoisomerase IV subunit A [Burkholderia mallei NCTC 10229]
 gi|126448292|ref|YP_001081616.1| DNA topoisomerase IV subunit A [Burkholderia mallei NCTC 10247]
 gi|166998423|ref|ZP_02264283.1| DNA topoisomerase IV, A subunit [Burkholderia mallei PRL-20]
 gi|254175656|ref|ZP_04882316.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 10399]
 gi|254202475|ref|ZP_04908838.1| DNA topoisomerase IV, A subunit [Burkholderia mallei FMH]
 gi|254207810|ref|ZP_04914160.1| DNA topoisomerase IV, A subunit [Burkholderia mallei JHU]
 gi|254356287|ref|ZP_04972563.1| DNA topoisomerase IV, A subunit [Burkholderia mallei 2002721280]
 gi|52429683|gb|AAU50276.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 23344]
 gi|121230157|gb|ABM52675.1| DNA topoisomerase IV, A subunit [Burkholderia mallei SAVP1]
 gi|124293960|gb|ABN03229.1| DNA topoisomerase IV, A subunit [Burkholderia mallei NCTC 10229]
 gi|126241162|gb|ABO04255.1| DNA topoisomerase IV, A subunit [Burkholderia mallei NCTC 10247]
 gi|147746722|gb|EDK53799.1| DNA topoisomerase IV, A subunit [Burkholderia mallei FMH]
 gi|147751704|gb|EDK58771.1| DNA topoisomerase IV, A subunit [Burkholderia mallei JHU]
 gi|148025284|gb|EDK83438.1| DNA topoisomerase IV, A subunit [Burkholderia mallei 2002721280]
 gi|160696700|gb|EDP86670.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 10399]
 gi|238525515|gb|EEP88943.1| DNA topoisomerase IV, A subunit [Burkholderia mallei GB8 horse 4]
 gi|243065485|gb|EES47671.1| DNA topoisomerase IV, A subunit [Burkholderia mallei PRL-20]
          Length = 772

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 279/747 (37%), Positives = 413/747 (55%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  V+F   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L+  + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--------------- 304
           ++ RG W +VVTE+P      +++E+I EL   K     + +  E               
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAV 319

Query: 305 -----SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
                    VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQRGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 EADAKQYGDE-----RRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  +   +   LL+ SS G  F+ +  ++++  + GK+F+ +         + V   
Sbjct: 611 SHLLHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPD 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTG 729

Query: 717 RSYNRSEN-----DLLGWLGKRGGVGS 738
           R     E       L   +GKR   G 
Sbjct: 730 RGGKAQEEALAGRALEPHVGKRARKGR 756


>gi|290580371|ref|YP_003484763.1| topoisomerase IV subunit A [Streptococcus mutans NN2025]
 gi|254997270|dbj|BAH87871.1| topoisomerase IV subunit A [Streptococcus mutans NN2025]
          Length = 812

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 203/751 (27%), Positives = 387/751 (51%), Gaps = 27/751 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KSA+ V
Sbjct: 1   MSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR++++
Sbjct: 61  GNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEARLSEI 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+ E+
Sbjct: 121 ADYLLQDIDKNTVAWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  + LID+P   ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+R  +E
Sbjct: 181 IDTVVYLIDHPSAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVVVRSRTEIE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +  G   IV TEIPY+V K+ L++KI ++ +  ++P + ++RDES  +   +     + 
Sbjct: 240 NLKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDREGLRIAIELKKD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            D   ++  +F  +D++  +  NM  +     P+ + +  +L  ++AHR++++  RS F 
Sbjct: 300 ADEQTILNYLFKYTDLQINYNFNMVAID-NYTPRQVGIIPMLTSYIAHRKDIIVARSKFD 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRL 436
            +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI+ L+L
Sbjct: 359 KEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAIVTLQL 418

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +   +++E   L      +++++   +  +N +  E+REVK+ F         R
Sbjct: 419 YRLTNTDIVTLENEEAELRERITTLNAIIGDERTMYNVMKRELREVKKKFGNP------R 472

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553
            +  +           ++I +E   V ++  G+I+     S +   +  L  ++ D +  
Sbjct: 473 LSELQAETQTIEIDTASLIVEEETYVSVTRGGYIKRTSPRSFNASTVEELGKRDDDDVIF 532

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDI--VTAFVY 608
             +A TT  +L+ +  G     P   L   R           + +   +++I  V    +
Sbjct: 533 IQNAKTTQELLIFTNLGNVIYRPIHELADIRWKEIGEHLSQNITNFATDEEILYVDLVDH 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDHVAVV 664
                    +S G     E  ++    +   K   + K+   ++++  +  +  D V ++
Sbjct: 593 FEEGTYYAATSLGQIKRFERRDLTPWRSYKSKAVKYAKLKGDDDQVIRISPIKLDDVMLI 652

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
                 L F+I+++P +  +  GV+  + K+G           + +  +    R   +  
Sbjct: 653 TARGYALRFNIEEVPIVGPKAAGVKAINLKEGDSLAAAFIANTDSIYIL--TQRGSLKRM 710

Query: 724 NDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
           +  L  +  R   G  V +    +  +  ++
Sbjct: 711 STNLIPVTSRAKRGLQVLRDLKSKPHRVFAA 741


>gi|157150712|ref|YP_001450523.1| DNA topoisomerase IV subunit A [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075506|gb|ABV10189.1| DNA topoisomerase IV, A subunit [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 816

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 209/747 (27%), Positives = 384/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYIL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +        +  R   G  V +   
Sbjct: 712 SLKRMAVADIPVTSRANRGLQVLRELK 738


>gi|126440445|ref|YP_001058187.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 668]
 gi|126219938|gb|ABN83444.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 668]
          Length = 772

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 279/747 (37%), Positives = 413/747 (55%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  V+F   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L+  + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--------------- 304
           ++ RG W +VVTE+P      +++E+I EL   K     + +  E               
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAV 319

Query: 305 -----SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
                    VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 EADAKQYGDE-----RRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  +   +   LL+ SS G  F+ +  ++++  + GK+F+ +         + V   
Sbjct: 611 SHLLHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPD 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTG 729

Query: 717 RSYNRSEN-----DLLGWLGKRGGVGS 738
           R     E       L   +GKR   G 
Sbjct: 730 RGGKAQEEALAGRALEPHVGKRARKGR 756


>gi|53718707|ref|YP_107693.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei K96243]
 gi|76809296|ref|YP_332711.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 1710b]
 gi|126454891|ref|YP_001065425.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 1106a]
 gi|167718667|ref|ZP_02401903.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei DM98]
 gi|167737679|ref|ZP_02410453.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 14]
 gi|167821800|ref|ZP_02453480.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 91]
 gi|167844837|ref|ZP_02470345.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei B7210]
 gi|167901844|ref|ZP_02489049.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei NCTC
           13177]
 gi|167910067|ref|ZP_02497158.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 112]
 gi|167918095|ref|ZP_02505186.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei BCC215]
 gi|217419881|ref|ZP_03451387.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 576]
 gi|237811437|ref|YP_002895888.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei MSHR346]
 gi|242315575|ref|ZP_04814591.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106b]
 gi|254181317|ref|ZP_04887914.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1655]
 gi|254190688|ref|ZP_04897195.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|254195008|ref|ZP_04901437.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei S13]
 gi|254259114|ref|ZP_04950168.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710a]
 gi|254298403|ref|ZP_04965855.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 406e]
 gi|52209121|emb|CAH35065.1| topoisomerase IV subunit A [Burkholderia pseudomallei K96243]
 gi|76578749|gb|ABA48224.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710b]
 gi|126228533|gb|ABN92073.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106a]
 gi|157808208|gb|EDO85378.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 406e]
 gi|157938363|gb|EDO94033.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|169651756|gb|EDS84449.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei S13]
 gi|184211855|gb|EDU08898.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1655]
 gi|217397185|gb|EEC37201.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 576]
 gi|237504161|gb|ACQ96479.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei MSHR346]
 gi|242138814|gb|EES25216.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106b]
 gi|254217803|gb|EET07187.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710a]
          Length = 772

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 279/747 (37%), Positives = 413/747 (55%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  V+F   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L+  + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--------------- 304
           ++ RG W +VVTE+P      +++E+I EL   K     + +  E               
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAV 319

Query: 305 -----SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
                    VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 EADAKQYGDE-----RRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  +   +   LL+ SS G  F+ +  ++++  + GK+F+ +         + V   
Sbjct: 611 SHLLHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPD 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTG 729

Query: 717 RSYNRSEN-----DLLGWLGKRGGVGS 738
           R     E       L   +GKR   G 
Sbjct: 730 RGGKAQEEALAGRALEPHVGKRARKGR 756


>gi|73916884|gb|AAZ93310.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916928|gb|AAZ93332.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/747 (28%), Positives = 390/747 (52%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|70726554|ref|YP_253468.1| DNA topoisomerase IV subunit A [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447278|dbj|BAE04862.1| topoisomerase IV subunit A [Staphylococcus haemolyticus JCSC1435]
          Length = 799

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 216/755 (28%), Positives = 404/755 (53%), Gaps = 24/755 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMHSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDLSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +++ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELVRDINKETVAFVPNYDDTTLEPMVLPARFPNLLVNGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGG I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVTQLMKYIKGPDFPTGG-IIQGVDGIKKAYETGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVDEETLRNGRQQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIIEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   +F  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNAEAIKNYLFKNSDLQIAYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + +   ++R+ I++GL+ A   +DE+I +IRN       K  +V+ F  TE Q +
Sbjct: 359 ANRTKYDLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAEFEFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +++E + L    ++   +L++       I  E+ ++++ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALENEHNELANLIKEYRHILDNHDALLQVIKSELTDIRKRFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   A+    ++ M+  E + + I+ +G+I+   + S     ++ +  K
Sbjct: 479 ------RLSSIEAEIAEIKIDKEVMVPSEDVVLSITRQGYIKRTSTRSFNASGVTEVGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ L+  + +V 
Sbjct: 533 DGDSLLKYQTVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPLDDYETVVD 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    +      ++ +  G       S        K    +KV   +++  V+++  D 
Sbjct: 593 VYNEQSFKDDAFYVLATRNGMIKKSNVSLFKTTRYNKPLVAMKVKDNDELINVIRLNEDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S +++ +   R  GV+  + KD     +      +  + I +  R 
Sbjct: 653 LISVLTHKGMSLTYSSEELSDTGLRAAGVKSINLKDEDFVVMTDVVDSDS-SIIMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
             +  +  +    KR   G  + K   ++  + ++
Sbjct: 712 AVKRISYKILQQAKRAQRGITLLKELKKNPHRVVA 746


>gi|269125862|ref|YP_003299232.1| DNA topoisomerase [Thermomonospora curvata DSM 43183]
 gi|268310820|gb|ACY97194.1| DNA topoisomerase (ATP-hydrolyzing) [Thermomonospora curvata DSM
           43183]
          Length = 833

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 239/760 (31%), Positives = 384/760 (50%), Gaps = 37/760 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            EEN+  V +   +   +L YA S I  RA+PD RDG KPV RRI+++M+EMGL      
Sbjct: 15  FEENIIDVDVSEEMRGSFLEYAYSVIYSRALPDARDGLKPVQRRILYSMNEMGLRPDRGH 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AAAYRY 131
            K AR+VGEV+GKLHPHGD ++YD++VR+AQP+  R PL+ G GNFG++ GD   AA RY
Sbjct: 75  VKCARVVGEVMGKLHPHGDSAIYDAMVRMAQPWAMRMPLVDGHGNFGSLGGDDLPAAMRY 134

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++  A L++  +DE+ VDFR  Y+ ++ EP V P+ FPNLL NG SGIAVGMAT++
Sbjct: 135 TEARLSNEAMLMVDAIDEETVDFRPNYDGQEREPEVLPAAFPNLLVNGASGIAVGMATNM 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  AA  L+++P+ ++E+L++++ GPD PTGGIIV   E I ++Y  GRG FR
Sbjct: 195 APHNLGEVVAAARHLLEHPDATLEELMQFVPGPDLPTGGIIV-GLEGIRDAYAKGRGTFR 253

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-R 310
           +RA   +E V      IVVTE+PY V   R+I KI +L+ AK++  + D++D +      
Sbjct: 254 MRATARIENVTPRRKGIVVTELPYGVGPERVIAKIKDLVQAKKLTGISDLKDLTDRTTGL 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++       +P+ ++  ++ L+ ME  F +N   L     P+ + L  +L+ ++ HR E
Sbjct: 314 RLVIEVKNGFNPEAVLAELYRLTPMEETFGINNVALVD-GQPRTLGLRELLQVYVDHRLE 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQ 427
           V+ RRS FR +    R+ +++GLL+A LNIDE+IAIIR+ D        ++  F L+E Q
Sbjct: 373 VVRRRSEFRRRKRQERLHLVEGLLVALLNIDEVIAIIRDSDDSAQAKRRLMETFELSEIQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  +++ E + L  E  ++ ++L S ++    +A E+ EV + FS
Sbjct: 433 AQYILDTPLRRLTRFDRLELEKESEQLGKEIARLTAILESDRKLRKLVAKELGEVAKKFS 492

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RRT   E S    A      +  EP  V++S+ G +          +      
Sbjct: 493 TP-----RRTVLLE-SSGQTAAAVPLEVPDEPCLVLLSSTGLLARTAGPGPLPAESGSGP 546

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYT--------LPAGNLLSGRGHGEAIQLLIDLNHN 599
            D L   + A T   + L+++ G+           LP G+       G  I     L   
Sbjct: 547 HDVLAAVVRATTRGEVGLVTSAGRMIKVEVLDLPALPPGDGPPSLAGGAPISEYTTLADG 606

Query: 600 QDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           + +V           L + + +G    V   +  AN  +    + +   +++   V++  
Sbjct: 607 ERVVGLGSLTGHGPGLALGTEQGVVKRV-VPDYPANREE-FEVISLKDGDRVVGAVELAS 664

Query: 659 D--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDS 714
           D   +  +  + +LL ++   +    R   G+      +G  +              +  
Sbjct: 665 DEHDLVFITSDAQLLRYAAANVRPQGRAAAGMAGIKLSEGARVIWFGTVDPDRESRVVTI 724

Query: 715 AG---------RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           AG             +  +  +     R   G    +   
Sbjct: 725 AGSSAALPGTQNGAVKVSDYAVFPRKGRATGGVRSHRFLK 764


>gi|73916932|gb|AAZ93334.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 213/747 (28%), Positives = 388/747 (51%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|167835908|ref|ZP_02462791.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis MSMB43]
          Length = 772

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 282/747 (37%), Positives = 415/747 (55%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  VDF   Y+    EP + P + P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--------------- 304
           ++ RG W +VVTE+P      +++E+I EL   K     + +  E               
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKAMLDLLDAV 319

Query: 305 -----SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
                    VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 ETDAKQYGDE-----RRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             ++  F   +   LL+ SS G  F+ +  ++++  + GK+F+ + +       + V  D
Sbjct: 611 SHLLHYFAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPVLPD 670

Query: 660 --HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 AAQVACLSSGGRLLVFGMDEMKALSGGGRGVILMAL-DAKETLVQALAINAAGVVLTGTG 729

Query: 717 RSYNRSEN-----DLLGWLGKRGGVGS 738
           R     E       L   +GKR   G 
Sbjct: 730 RGGKAQEEALAGRALEPHVGKRARKGR 756


>gi|327460305|gb|EGF06642.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1057]
          Length = 816

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 209/747 (27%), Positives = 383/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTREEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDRVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTRNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +        +  R   G  V +   
Sbjct: 712 SLKRMAVADIPVTSRANRGLQVLRELK 738


>gi|295675918|ref|YP_003604442.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1002]
 gi|295435761|gb|ADG14931.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1002]
          Length = 773

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 282/766 (36%), Positives = 422/766 (55%), Gaps = 38/766 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  DN  +       +   ++L    E  YL YA+S +K RA+PD+ DG KPV RRI  A
Sbjct: 1   MDDDNTLDLFNEPPADGDVLTLGNYAERAYLEYAVSVVKGRALPDVCDGQKPVQRRIQFA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+
Sbjct: 61  MNEMGLSDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+T +A+L+L  +D+  VDF   Y+    EP V P++ P +L NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLAEIDQGTVDFMPNYDGSFDEPKVLPARLPFVLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVG+AT IPSHN++E+  AA+ALI +P++S  +L++++ GPDFP GG I+ S   I 
Sbjct: 181 SGIAVGLATEIPSHNLREVASAAVALIRHPKLSHAELMQHVPGPDFPGGGQIISSEAEIA 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG  +VRARW +E++ RG W +V+TE+P      +++E+I E    K     + 
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKT 300

Query: 301 IRDE--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +  E                        VR+V  PK+  +D    + ++   + +E+  P
Sbjct: 301 LTPEQLQTKQTLLGLVDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAP 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           LNM ++     P+   L  IL EW+A R   + RR+  R+  +D R+ IL+G +I +LNI
Sbjct: 361 LNMVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNI 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I IIR  D+PK  +++ F LT+ Q + IL +RLR L +LE+ +I+ EL  L  EK K
Sbjct: 421 DEVIRIIRESDEPKVALMAAFGLTDRQAEDILEIRLRQLARLEKIKIEKELAELREEKAK 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ LL S      Q+  EI    + +        RRT   +  RA      +A +  EP+
Sbjct: 481 LEELLGSEPAMKRQLIKEIEADAKQYGDE-----RRTLIQQEKRATF----EARVVDEPV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV+S +GW+R+LK H +D +   FK GD L  A    T D ++   ++G+ Y++    L
Sbjct: 532 TVVVSQKGWVRALKGHGLDTAGFTFKAGDGLYAAFQCRTPDTLIAWGSNGRVYSVAVAQL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG G  +  LI+L     ++  +   +   LL+ SS G  FI +  ++++  + GK+
Sbjct: 592 PGGRGDGVPVTSLIELESGSHLMHYYAASADQALLLASSNGFGFIAKVGDMVSRVKAGKS 651

Query: 641 FLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
           F+ + +       + +  D   VA +    +LL+F +D++  +   G+GV L +  D   
Sbjct: 652 FMTIDAGAAPLAPMPMLPDAAQVACLSSGGRLLVFGLDEMKTLSGGGRGVTLMAL-DDKE 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSEN-----DLLGWLGKRGGVGS 738
           + V    I +    +    R     E      +L   +GKR   G 
Sbjct: 711 TLVQALAINKAGVMLIGTRRGGRVDEEKLAGAELAAHVGKRARKGR 756


>gi|15900740|ref|NP_345344.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae TIGR4]
 gi|19861240|sp|P72525|PARC_STRPN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|14972328|gb|AAK74984.1| topoisomerase IV, subunit A [Streptococcus pneumoniae TIGR4]
          Length = 823

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 213/748 (28%), Positives = 388/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+ EIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + +   N++I+  
Sbjct: 534 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D       V+  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 594 EVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 654 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIEEILATSRAKRGLQVLRELK 739


>gi|301300624|ref|ZP_07206814.1| DNA topoisomerase IV, A subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851778|gb|EFK79472.1| DNA topoisomerase IV, A subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 798

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 226/752 (30%), Positives = 398/752 (52%), Gaps = 28/752 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  A
Sbjct: 2   PTERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGDS AA RY
Sbjct: 62  FRKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++Q+A  +LQ +D+  VD    +++ + EP V P++FPNLL NG +GI+ G AT I
Sbjct: 122 TEARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EAA+ LI++P  S++ L+++I GPDFPTGGI+    + I ++Y  GRG   
Sbjct: 182 PPHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQ-GIDGIKKAYETGRGRAV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R++  +E++      I+VTEIPY+V KS L+++I EL I K++  + ++RDES  +   
Sbjct: 241 LRSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    ++ +   ++  +F  +D++  +  NM  ++  + P+ + L  IL+ +L H+REV
Sbjct: 301 VVIELKKNANAQGILNYLFKNTDLQVSYNFNMVAIN-NKRPEHVGLKTILEAYLEHQREV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
             RR+ F ++    R  I+KGL+ A   +D++I  IR        K  +VS FS TE Q 
Sbjct: 360 TTRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQS 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E + L       +++L + K+    I  E+  + + +  
Sbjct: 420 EAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKYGS 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                  R T  +   +      + M+ +E + +++S+ G+++     S    D      
Sbjct: 480 E------RLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGL 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIV 603
           K+ D   +    +T   + + +  G     P         +  GE +   + L +++ ++
Sbjct: 534 KDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLENDEYVL 593

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKV 656
            AFV+   D   K L+ + +G    V+ +++        +   ++K+ ++ +++  V +V
Sbjct: 594 NAFVFENIDQDVKFLIATKEGYIKQVKLADLKPGRTYKTRASRYIKLKTDVDEVISVSQV 653

Query: 657 TGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             D   V         L +S+D++P       GV+    +D  +++VI     + ++ I 
Sbjct: 654 ESDKSQVFCASYTGYGLRYSLDEVPTNGALAAGVKCMDLRDDTLANVILVSESDEVSII- 712

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              R   +        L  R   G  + +   
Sbjct: 713 -TQRGSYKKMKVADVPLTTRARRGVQILRELK 743


>gi|73916872|gb|AAZ93304.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 388/747 (51%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYYAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|73916856|gb|AAZ93296.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 213/747 (28%), Positives = 389/747 (52%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|33596502|ref|NP_884145.1| DNA topoisomerase IV subunit A [Bordetella parapertussis 12822]
 gi|33566271|emb|CAE37182.1| topoisomerase IV subunit A [Bordetella parapertussis]
          Length = 771

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 264/770 (34%), Positives = 413/770 (53%), Gaps = 47/770 (6%)

Query: 6   ISNSNTL------VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           +S+SN          +  +A++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++
Sbjct: 1   MSDSNQPGLFDGGATDPHEAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM  MGL  GA   KSAR+VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI G GNFG
Sbjct: 61  AMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           + DGD+AAA RYTEAR+T  ++L+L  ++E  VDF   Y+    EP + P++ P +L NG
Sbjct: 121 SRDGDNAAAMRYTEARLTPFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            SGIAVGMAT IPSHN++E+ +A +ALI NP++  E+LL  + GPDF  GG I+     I
Sbjct: 181 ASGIAVGMATEIPSHNLREVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADI 240

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            + Y  GRG  + RARW  EE+ RG W +VVTE+P      +++E+I E+   K     +
Sbjct: 241 AQIYATGRGSLKARARWQFEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKK 300

Query: 300 DIRDE--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            +  E                        VR+V  PK   +D D  + ++   + ME+  
Sbjct: 301 SLSAEQQQAKAVMLSLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNV 360

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
           P+N+  +     P+   L  +L+EW+A R + + RR+  R+  +  R+ +L+G ++ YLN
Sbjct: 361 PVNVVCIGTDGRPRQKSLRDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLN 420

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           +DE+I  IR  ++P+  +++RF LTE Q + IL +RLR L +LE  +I+ EL     E+ 
Sbjct: 421 VDEVIQTIREAEEPRAALMARFGLTERQAEDILEMRLRQLARLEGIKIEQELAGKREEQL 480

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  LL++       +  EI    + +        RRT      RA      +  +  EP
Sbjct: 481 RLQDLLDNPGSLKRLLIKEIEGDAKQYGD-----DRRTLIETAERAVL----ETKVVDEP 531

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +TV++S +GW+R+ + H  D     FK+GD L  A    TTD ++ +  +G+ Y++    
Sbjct: 532 VTVIVSQKGWLRARQGHGHDAGQFSFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVSG 591

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L S RG G+ +  +IDL     IV      S  + L+ + +G  F    S++ +  R GK
Sbjct: 592 LPSARGDGQPVTTMIDLEAGTRIVHTIAAASDSRWLLATRRGFGFAARLSDMSSRQRAGK 651

Query: 640 TFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGG 696
            F+ +   +++   V +      +A++    K L+F +D++  +   G+G  L       
Sbjct: 652 QFITLEKGDELLRPVPLFEGATQLALLSAKGKFLVFGLDEVKSLSGGGRGTILMGLDTAD 711

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSEND------LLGWLGKRGGVGSLV 740
             D        G   + +AG   N+   D      L  ++GKR   G  +
Sbjct: 712 KLDQTVPIGAAG---LRAAGIYRNKQTEDILAGAALAPYVGKRARKGRQL 758


>gi|227890874|ref|ZP_04008679.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius ATCC
           11741]
 gi|227867283|gb|EEJ74704.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius ATCC
           11741]
          Length = 808

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 225/761 (29%), Positives = 402/761 (52%), Gaps = 29/761 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  A
Sbjct: 2   PTERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGDS AA RY
Sbjct: 62  FRKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++Q+A  +LQ +D+  VD    +++ + EP V P++FPNLL NG +GI+ G AT I
Sbjct: 122 TEARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EAA+ LI++P  S++ L+++I GPDFPTGGI+    + I ++Y  GRG   
Sbjct: 182 PPHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQ-GIDGIKKAYETGRGRAV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R++  +E++      I+VTEIPY+V KS L+++I EL I K++  + ++RDES  +   
Sbjct: 241 LRSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    ++ +   ++  +F  +D++  +  NM  ++  + P+ + L  IL+ +L H+REV
Sbjct: 301 VVIELKKNANAQGILNYLFKNTDLQVSYNFNMVAIN-NKRPEHVGLKTILEAYLEHQREV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
             RR+ F ++    R  I+KGL+ A   +D++I  IR        K  +VS FS TE Q 
Sbjct: 360 TTRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E + L       +++L + K+    I  E+  + + +  
Sbjct: 420 EAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKYGS 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                  R T  +   +      + M+ +E + +++S+ G+++     S    D      
Sbjct: 480 E------RLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGL 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIV 603
           K+ D   +    +T   + + +  G     P         +  GE +   + L +++ ++
Sbjct: 534 KDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLGNDEYVL 593

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKV 656
            AFV+   D   K L+ + +G    V+ +++        +   ++K+ ++ +++  V +V
Sbjct: 594 NAFVFESIDQDAKFLIATKEGYIKQVKLADLKPGRTYKTRASRYVKLKTDADEVISVSQV 653

Query: 657 TGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             D   V         L +S+D++P       GV+    +D  +++VI     + ++ + 
Sbjct: 654 ESDKSQVFCASYTGYGLRYSLDEVPTNGALAAGVKCMDLRDDTLANVILVSESDEVSIL- 712

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              R   +        L  R   G  + +    +  + + +
Sbjct: 713 -TQRGSYKKMKVADVPLTTRARRGVQILRELKTKPHRIIFA 752


>gi|134094033|ref|YP_001099108.1| DNA topoisomerase IV subunit A [Herminiimonas arsenicoxydans]
 gi|133737936|emb|CAL60981.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Herminiimonas arsenicoxydans]
          Length = 776

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 277/766 (36%), Positives = 428/766 (55%), Gaps = 43/766 (5%)

Query: 6   ISNSNTLVE-----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +++   L +     +  ++++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ A
Sbjct: 1   MTDQANLFDTAAPADGGESLTLATFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+GL+  A  +KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI GQGNFG+
Sbjct: 61  MNELGLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+T +A+L+++ +D   VDF+  Y+    EP + PS+ P +L NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLMEEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT IPSHN++E+ +AA+ALI NP+++ E+L+  + GPDFP GG I+ S  +I 
Sbjct: 181 SGIAVGMATEIPSHNLREVAQAAVALIRNPKLTHEELVAIVPGPDFPGGGQIITSPTAIS 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--------- 291
           + YR GRG  +VRA W +E++ RG W  VVTE+P+     R++E+I EL           
Sbjct: 241 DIYRSGRGSVKVRATWKIEDMARGQWQAVVTELPHGTSSQRVLEEIEELTNPKIRLGKKS 300

Query: 292 ---------AKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                       + +L+ +RDES     VR+V  PK+++ D       +   + +ET   
Sbjct: 301 LSPEQLALKQTVLAMLDTVRDESGRDAPVRLVFEPKSKNQDQTEFTNMLLAHTSLETSVS 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +N+ ++     P+   L  IL+EW+  R   + RRS F++Q ++ R+ IL+G     LNI
Sbjct: 361 INLVMIGGDGKPRQKALGDILREWVDFRFTTITRRSQFKLQKVNDRIHILEGREAILLNI 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           D++I IIR  D+PKP ++  F L+E Q D IL +RLR L +LE  +I+ EL  L +EK  
Sbjct: 421 DKVIKIIRESDEPKPALMDAFRLSERQADDILEIRLRQLARLETIKIQQELAELRSEKST 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL++       +  EI   ++ F       +RRT      +A    + +  +  EP+
Sbjct: 481 LQDLLDNPSSMKRLVIKEIEADEKQFGD-----KRRTLIEVAEKA----VVETRVIDEPV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVVIS +GW+R+   H  D +   FK  D+L       T D +L+  ++G+ Y++    L
Sbjct: 532 TVVISQKGWVRARTGHGHDAAQFTFKASDALYDTFECRTVDTLLVFGSNGRIYSVAVAAL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              RG G  I  L++L     ++  F   +   LL+ S+ G  F  +  ++++ TR GK 
Sbjct: 592 PGARGDGVPITTLVELASGTRVLHYFAGPADVTLLLASTAGYGFTAKSGDMVSRTRSGKA 651

Query: 641 FLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
           F+ +   ++      +      +A + E  ++L+F ID+I  + + G+GV L   +    
Sbjct: 652 FITLDEGDEPLTPRPIFAGASAIACLSEKGRVLVFGIDEIKSLTAGGRGVILMDLEKNEK 711

Query: 698 SDVICFKICEGLTWIDSAGRSYN-----RSENDLLGWLGKRGGVGS 738
             +    I +    +   GR         S + L   +GKR   G 
Sbjct: 712 L-LAAQPISQRGVVVSGIGRGAKAQEILLSASGLAVHIGKRARKGK 756


>gi|325694457|gb|EGD36366.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK150]
          Length = 816

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 209/747 (27%), Positives = 383/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIENLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDRVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +        +  R   G  V +   
Sbjct: 712 SLKRMAVADIPVTSRANRGLQVLRELK 738


>gi|47570275|ref|ZP_00240925.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9241]
 gi|47553066|gb|EAL11467.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9241]
          Length = 807

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQIWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|325696554|gb|EGD38444.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK160]
          Length = 816

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 207/756 (27%), Positives = 388/756 (51%), Gaps = 27/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNAFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR++++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKDIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     +  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTIEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
             +        +  R   G  V +    +  +  ++
Sbjct: 712 SLKRMAVADIPVTSRANRGLQVLRELKAKPHRVFAA 747


>gi|322376409|ref|ZP_08050902.1| DNA topoisomerase IV, A subunit [Streptococcus sp. M334]
 gi|321282216|gb|EFX59223.1| DNA topoisomerase IV, A subunit [Streptococcus sp. M334]
          Length = 821

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/748 (28%), Positives = 389/748 (52%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD+S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   ++KL+E++ GPDFPTGG I++ R+ I ++Y  G+G   VR+
Sbjct: 185 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGG-IIQGRDEIKKAYETGKGRVVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 244 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 304 ELKKEANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 363 RSRFDKENAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 423 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 481 ----RLSTLEDTAKAIEIDTASLIAEEDAYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + +   N++I+  
Sbjct: 537 DRLIFVQAAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 596

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D        +  G    VE  E         K   + K+  E +++  V  +  
Sbjct: 597 EVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKL 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++  N   L F+I+++P +  +  GV+  + K+                 +    R
Sbjct: 657 DDVLLISLNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDTLQSAFICNTSSFYLL--TQR 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 715 GSLKRVSIDEIPATSRAKRGLQVLRELK 742


>gi|300214582|gb|ADJ78998.1| Topoisomerase IV subunit A [Lactobacillus salivarius CECT 5713]
          Length = 808

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 225/761 (29%), Positives = 402/761 (52%), Gaps = 29/761 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  A
Sbjct: 2   PTERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGDS AA RY
Sbjct: 62  FRKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++Q+A  +LQ +D+  VD    +++ + EP V P++FPNLL NG +GI+ G AT I
Sbjct: 122 TEARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EAA+ LI++P  S++ L+++I GPDFPTGGI+    + I ++Y  GRG   
Sbjct: 182 PPHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQ-GIDGIKKAYETGRGRAV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R++  +E++      I+VTEIPY+V KS L+++I EL I K++  + ++RDES  +   
Sbjct: 241 LRSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    ++ +   ++  +F  +D++  +  NM  ++  + P+ + L  IL+ +L H+REV
Sbjct: 301 VVVELKKNANAQGILNYLFKNTDLQVSYNFNMVAIN-NKRPEHVGLKTILEAYLEHQREV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
             RR+ F ++    R  I+KGL+ A   +D++I  IR        K  +VS FS TE Q 
Sbjct: 360 TTRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E + L       +++L + K+    I  E+  + + +  
Sbjct: 420 EAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKYGS 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                  R T  +   +      + M+ +E + +++S+ G+++     S    D      
Sbjct: 480 E------RLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGL 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIV 603
           K+ D   +    +T   + + +  G     P         +  GE +   + L +++ ++
Sbjct: 534 KDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLGNDEYVL 593

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKV 656
            AFV+   D   K L+ + +G    V+ +++        +   ++K+ ++ +++  V +V
Sbjct: 594 NAFVFESIDQDAKFLIATKEGYIKQVKLADLKPGRTYKTRASRYVKLKTDADEVISVSQV 653

Query: 657 TGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             D   V         L +S+D++P       GV+    +D  +++VI     + ++ + 
Sbjct: 654 ESDKSQVFCASYTGYGLRYSLDEVPTNGALAAGVKCMDLRDDTLANVILVSESDEVSIL- 712

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              R   +        L  R   G  + +    +  + + +
Sbjct: 713 -TQRGSYKKMKVADVPLTTRARRGVQILRELKTKPHRIVFA 752


>gi|332361155|gb|EGJ38959.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1056]
          Length = 816

 Score =  562 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 208/756 (27%), Positives = 387/756 (51%), Gaps = 27/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDVVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDNAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
             +        +  R   G  V +    +  +  ++
Sbjct: 712 SLKRMAVADIPVTSRANRGLQVLRELKAKPHRVFAA 747


>gi|107023296|ref|YP_621623.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia AU 1054]
 gi|116690379|ref|YP_836002.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia HI2424]
 gi|105893485|gb|ABF76650.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia AU 1054]
 gi|116648468|gb|ABK09109.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia HI2424]
          Length = 773

 Score =  562 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 288/766 (37%), Positives = 432/766 (56%), Gaps = 41/766 (5%)

Query: 3   VDNISN-SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN S+   +       A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM
Sbjct: 2   DDNTSDLFASPDAPESDALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T +A+L+L  +D+  VDF   Y+    EP   PS+ P +L NG S
Sbjct: 122 DGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGAS 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+AT IPSHN++E+  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  
Sbjct: 182 GIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAA 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---------- 291
           +Y  GRG  +VRA+W +E++ RG W +VVTE+P      +++E+I EL            
Sbjct: 242 AYETGRGSLKVRAKWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTL 301

Query: 292 --------AKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + LL+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   L
Sbjct: 302 TPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATL 361

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P    L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNID
Sbjct: 362 NLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNID 421

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D+PK  ++S F L+E Q + IL +RLR L +LE+ +I+ ELD L  EK K+
Sbjct: 422 EVIRIIRESDEPKAALMSAFGLSERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL +       +  EI    + +        RRT   +  RA      +A +  EP+T
Sbjct: 482 EELLANESAMKRLMIKEIEADAKQYGD-----DRRTLIQQEKRATF----EAKVVDEPVT 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV+S +GW+R+LK H +D +   FK GD L  A    T DR++   + G+ Y++    L 
Sbjct: 533 VVVSQKGWVRALKGHGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLP 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG G  +  LI+L     ++  +   +  +LL+ SS G  F+ +  ++++  + GK+F
Sbjct: 593 GGRGDGVPVTSLIELESGSHLMHYYAAPADQQLLLASSNGFGFLAKVGDMVSRLKAGKSF 652

Query: 642 LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGIS 698
           + + +       + V      VA +    +LL+F +D++  +   G+GV L +  D   +
Sbjct: 653 MTIDAGAVPLAPMPVLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DDKET 711

Query: 699 DVICFKICEGLTWIDSAGRSYNRSEND------LLGWLGKRGGVGS 738
            V    I      +   GR   + ++D      L   +GKR   G 
Sbjct: 712 LVQALAIDPAGVVLIGTGRG-GKPQDDTLSYAGLAPHIGKRARKGR 756


>gi|118478840|ref|YP_895991.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418065|gb|ABK86484.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis str. Al
           Hakam]
          Length = 807

 Score =  562 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/751 (28%), Positives = 382/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G      
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKV 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFDFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVQNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|327474465|gb|EGF19871.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK408]
          Length = 816

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 209/756 (27%), Positives = 386/756 (51%), Gaps = 27/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDTVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + DL++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTDLILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIVGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETCVSVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTRNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
             +        +  R   G  V +    +  +  ++
Sbjct: 712 SLKRMAVADIPVTSRANRGLQVLRELKAKPHRVFAA 747


>gi|327469988|gb|EGF15452.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK330]
          Length = 816

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 209/756 (27%), Positives = 387/756 (51%), Gaps = 27/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P ++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPCLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFLSPAKTTQHMLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   ++++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
             +        +  R   G  V +    +  +  ++
Sbjct: 712 SIKRMAVADIPVTSRANRGLQVLRELKTKPHRVFAA 747


>gi|312867719|ref|ZP_07727925.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405]
 gi|311096782|gb|EFQ55020.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405]
          Length = 835

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 209/747 (27%), Positives = 385/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++K
Sbjct: 20  SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 79

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 80  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 139

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 140 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 199

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 200 NLAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 258

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 259 KTEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 318

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + DL++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRR+++  
Sbjct: 319 ELKKDANADLILNYLFKYTDLQVNYNFNMVAID-NYTPRQVGIVPILSSYIAHRRDIIVA 377

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  +RR+ I++GL+     +DE+IA+IR  D     K  +   +  TE Q +AI
Sbjct: 378 RSRFDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADAKENLKVSYDFTEEQAEAI 437

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E  +L  +   + +++   +  +N +  E+REVK++F     
Sbjct: 438 VTLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGDERTMFNLMKKELREVKKLFGNP-- 495

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S +   +  +  ++ 
Sbjct: 496 ----RRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTSPRSFNASTVEEVGKRDD 551

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT  +LL +  G A   P   L   +       L   L + +        
Sbjct: 552 DELIFVEPAKTTQHLLLFTNFGNAIYRPIHELTDTKWKDIGEHLSQTLTNFEQEEEILFA 611

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
           +             + +G     E  E+        K   + K+   ++++  V  V  +
Sbjct: 612 EIVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKLKDQDDRIVAVAPVVLE 671

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + ++ +N   L F+++++P +  +  GV+  + KDG             +  +    R 
Sbjct: 672 DIMIITKNGYGLRFNVEEVPVVGAKAAGVKAINLKDGDQVAAAFKSTTPSMYIL--TQRG 729

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +        +  R   G  V +   
Sbjct: 730 SLKRMLQDDIPVTSRAKRGLQVLRELK 756


>gi|73916876|gb|AAZ93306.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916888|gb|AAZ93312.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916930|gb|AAZ93333.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 214/747 (28%), Positives = 389/747 (52%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|73916846|gb|AAZ93291.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 214/747 (28%), Positives = 389/747 (52%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|73916858|gb|AAZ93297.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916860|gb|AAZ93298.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916862|gb|AAZ93299.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916864|gb|AAZ93300.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 214/747 (28%), Positives = 389/747 (52%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|331266199|ref|YP_004325829.1| topoisomerase IV subunit A, ParC [Streptococcus oralis Uo5]
 gi|326682871|emb|CBZ00488.1| topoisomerase IV subunit A, ParC [Streptococcus oralis Uo5]
          Length = 826

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 213/748 (28%), Positives = 385/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTGG I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGG-IIQGRDEIKKAYETGKGRVAVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + ++++  +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIISDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ +T G     P   L   R       L   + + +        
Sbjct: 534 DRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYA 593

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
                +D        +  G    VE  E         K   + K+  E +++  V  +  
Sbjct: 594 EVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++ +N   L F+I+++P +S +  GV+  + K                  +    R
Sbjct: 654 DDVLLISQNGYALRFNIEEVPVVSAKAAGVKAMNLKADDALQAAFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIDEIPATSRAKRGLQVLRELK 739


>gi|206560813|ref|YP_002231578.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia J2315]
 gi|198036855|emb|CAR52755.1| topoisomerase IV subunit A [Burkholderia cenocepacia J2315]
          Length = 773

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 286/765 (37%), Positives = 432/765 (56%), Gaps = 39/765 (5%)

Query: 3   VDNISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN S+     +  + +A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM
Sbjct: 2   DDNTSDLFAGSDAPDAEALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T +A+L+L  +D+  VDF   Y+    EP   PS+ P +L NG S
Sbjct: 122 DGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGAS 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+AT IPSHN++E+  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  
Sbjct: 182 GIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMSLIPGPDFPGGGQIISSDTEISA 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---------- 291
           +Y  GRG  +VRA+W +E++ RG W +VVTE+P      +++E+I EL            
Sbjct: 242 AYETGRGSLKVRAKWKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKTL 301

Query: 292 --------AKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + LL+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   L
Sbjct: 302 TPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATL 361

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P    L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNID
Sbjct: 362 NLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNID 421

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D+PK  ++S F L+E Q + IL +RLR L +LE+ +I+ EL+ L  EK K+
Sbjct: 422 EVIRIIRESDEPKAALMSAFGLSERQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL +       +  EI    + +        RRT   +  RA      +A +  EP+T
Sbjct: 482 EELLANDSAMKRLMIKEIEADAKQYGD-----DRRTLIQQEKRATF----EAKVVDEPVT 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV+S +GW+R+LK H +D +   FK GD L  A    T DR++   + G+ Y++    L 
Sbjct: 533 VVVSQKGWVRALKGHGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLP 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG G  +  LI+L     ++  +   +  +LL+ SS G  F+ +  ++++  + GK+F
Sbjct: 593 GGRGDGVPVTSLIELESGSHLMHYYAAPADQQLLLASSNGFGFLAKVGDMVSRVKAGKSF 652

Query: 642 LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGIS 698
           + + +       + V      VA +    +LL+F +D++  +   G+GV L +  D   +
Sbjct: 653 MTIDAGAVPLAPMPVLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DDKET 711

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
            V    I      +   GR     ++ L        +GKR   G 
Sbjct: 712 LVQALAIDPAGVVLIGTGRGGKAQDDTLSYAGLAPHIGKRARKGR 756


>gi|78067167|ref|YP_369936.1| DNA topoisomerase IV subunit A [Burkholderia sp. 383]
 gi|77967912|gb|ABB09292.1| DNA topoisomerase IV subunit A [Burkholderia sp. 383]
          Length = 773

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 288/765 (37%), Positives = 430/765 (56%), Gaps = 39/765 (5%)

Query: 3   VDNISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN S+     +  + +A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM
Sbjct: 2   DDNTSDLFASSDAPDAEALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T +A+L+L  +D+  VDF   Y+    EP   PS+ P +L NG S
Sbjct: 122 DGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGAS 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+AT IPSHN++E+  AA+ LI NP++S  +L+  I GPDFP GG I+ S   I  
Sbjct: 182 GIAVGLATEIPSHNLREVAAAAVTLIRNPKLSHAELMNLIPGPDFPGGGQIISSDTEIAA 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---------- 291
           +Y  GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL            
Sbjct: 242 AYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKTL 301

Query: 292 --------AKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + LL+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   L
Sbjct: 302 TPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATL 361

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P    L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNID
Sbjct: 362 NLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNID 421

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D+PK  ++S F L+E Q + IL +RLR L +LE+ +I+ EL+ L  EK K+
Sbjct: 422 EVIRIIRESDEPKSALMSAFGLSERQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL +       +  EI    + +        RRT   +  RA      +A +  EP+T
Sbjct: 482 EELLANESAMKRLMIKEIEADAKQYGD-----DRRTLIQQEKRATF----EAKVVDEPVT 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV+S +GW+R+LK H +D ++  FK GD L  A    T DR++   + G+ Y++    L 
Sbjct: 533 VVVSQKGWVRALKGHGLDPASFSFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLP 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG G  +  LI+L     ++  F   +  +LL+ SS G  F+ +  ++++  + GK F
Sbjct: 593 GGRGDGVPVTSLIELESGSHLMHYFAAPADQQLLLASSNGFGFLAKVGDMVSRVKAGKAF 652

Query: 642 LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGIS 698
           + + +       + V      VA +    +LL+F +D++  +   G+GV L +  D   +
Sbjct: 653 MTIDAGAVPLAPMPVLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DDKET 711

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
            V    I      +   GR     +  L        +GKR   G 
Sbjct: 712 LVQALAIDPAGVVLIGTGRGGKAMDETLSYAGLAPHVGKRARKGR 756


>gi|296159126|ref|ZP_06841953.1| DNA topoisomerase IV, A subunit [Burkholderia sp. Ch1-1]
 gi|295890687|gb|EFG70478.1| DNA topoisomerase IV, A subunit [Burkholderia sp. Ch1-1]
          Length = 774

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 279/769 (36%), Positives = 424/769 (55%), Gaps = 43/769 (5%)

Query: 1   MGVDNISN---SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  DN  +   +    E +   ++L    E  YL YA+S +K RA+PD+ DG KPV RRI
Sbjct: 1   MDDDNTLDLFTAPPPPEGDF--LTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRI 58

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + AM++MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGN
Sbjct: 59  LFAMNDMGLSDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGN 118

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+ DGD AAA RYTEAR+T +A+L+L  +++  VDF   Y+ E  EP + P++ P +L 
Sbjct: 119 FGSRDGDGAAAMRYTEARLTPIAKLLLDEINQGTVDFMKNYDGEFDEPRLLPARLPFVLL 178

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG SGIAVG+AT IPSHN++E+  AA+A+I NP++   +L++YI GPDFP GG I+ S  
Sbjct: 179 NGASGIAVGLATEIPSHNLREVAAAAVAMIRNPKLQHAELMQYIPGPDFPGGGQIISSEA 238

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I  +Y  GRG  +VRARW +EE+ RG W +V+TE+P      +++E+I E    K    
Sbjct: 239 EISAAYESGRGSLKVRARWKIEELARGQWQLVITELPPSTAAQKVLEEIEEQTNPKIKLG 298

Query: 298 LEDIRDE--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            + +  E                        VR+V  PK+  +D    + ++   + +E+
Sbjct: 299 KKTLTPEQLQTKQTMLALLDAVRDESGKDAPVRLVFEPKSSRIDQTDFVNTLLAHTSLES 358

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
              LN+ ++     P+   L  IL EW+A R   + RR+  R+  +D R+ IL+G +I +
Sbjct: 359 NASLNLVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVF 418

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
           LNIDE+I IIR  D+PK  +++ F L++ Q + IL +RLR L +LE+ +I+ EL  L  E
Sbjct: 419 LNIDEVIRIIRESDEPKVALMAAFGLSDRQAEDILEIRLRQLARLEKIKIEKELAELKDE 478

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           K +++ LL S       +  EI    + +        RRT   +  RA      +A +  
Sbjct: 479 KARLEELLGSESAMKRLLIKEIEGDAKQYGDE-----RRTLIQQEKRATF----EARVVD 529

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           EP+TVV+S +GW+R+LK H +D +   FK GD L  A    T D ++   ++G+ Y++  
Sbjct: 530 EPVTVVVSQKGWVRALKGHGLDAAGFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAV 589

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
             L  GRG G  +  LI+L     ++  +   +   LL+ SS G  FI +  ++++  + 
Sbjct: 590 AMLPGGRGDGVPVTSLIELESGSHLMHYYAASADQALLLASSNGFGFIAKVGDMVSRVKA 649

Query: 638 GKTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           GK+F+ + +  +    + +  D  H+A +  N +LL+F +D++  +   G+GV L +  D
Sbjct: 650 GKSFMTIDAGAQPLAPMPMLPDATHIACLSSNGRLLVFGLDEMKTLSGGGRGVTLMAL-D 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSEN-----DLLGWLGKRGGVGS 738
              + V    I      +    R     E       L   +GKR   G 
Sbjct: 709 DEETLVQALSINNAGVVLIGTRRGGRVDEEKVSGAVLAPHIGKRARKGR 757


>gi|319892373|ref|YP_004149248.1| Topoisomerase IV subunit A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162069|gb|ADV05612.1| Topoisomerase IV subunit A [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 803

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 220/759 (28%), Positives = 403/759 (53%), Gaps = 27/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M   G  +   F
Sbjct: 1   MAEIIQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E IL+ +++D VDF   Y++ + EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A L  IDNP++++++L++YI GPDFPTGG IV+  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGG-IVQGIDGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+VTEIPY+V KS L++KI EL   K++  + ++RDE+      V
Sbjct: 240 RAKADIETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++   ++  ++  +D++  +     V      P++M +  I+  +L H+ EV+
Sbjct: 300 AVELKKDVNATSILNFLYKNTDLQVAYNF-NMVAITEGRPKLMGIKPIISSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+SF ++  + R+ I++GL+ A   +DE+IA+IRN       K  +V  +  TE Q +
Sbjct: 359 TRRTSFDLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E D L  +   +  +L +     + I  E+ E+K+ F + 
Sbjct: 419 AIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ ++  E + + ++  G+I+     S        +  K
Sbjct: 479 ------RLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV- 603
           E D +   +  +T D  ++ +  G+   +P   L   +     + +  ++ +  ++ +V 
Sbjct: 533 ERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVD 592

Query: 604 --TAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTGD- 659
             T   ++    ++  + +G       S   +  T K    +KV   + +  V+ V  D 
Sbjct: 593 CYTVSEFNDERAIITATRQGMIKKSLLSGFKSTRTTKPLVAMKVKESDALISVMLVPADA 652

Query: 660 ---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++      L + + ++P+   R  G++  + KD     V+   I    T + + 
Sbjct: 653 SSQLITLLTHRGMSLTYPMSELPDTGLRATGIKAINLKDEDHV-VLADHIQTEDTILIAT 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPR-SGKFLSS 753
            R   +  +  +    KR   G  + K   +   + +++
Sbjct: 712 QRGALKRISFKVLQQAKRAQRGITLLKELKKQPHRVVAA 750


>gi|315302928|ref|ZP_07873659.1| DNA topoisomerase IV, A subunit [Listeria ivanovii FSL F6-596]
 gi|313628701|gb|EFR97103.1| DNA topoisomerase IV, A subunit [Listeria ivanovii FSL F6-596]
          Length = 819

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 207/765 (27%), Positives = 389/765 (50%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTSEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E++++ + GPDFPTGGII    + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQG-IDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +     V    + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNF-NMVAIHNKRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + + + 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELVAVLKAELSEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ +         R T  +   A+     + ++  E + V ++  G+++     S    +
Sbjct: 475 KKKYKTP------RRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDL 596
              L  KE D        ++ + +LL ++ G     P   L   R          L  DL
Sbjct: 529 GKELAMKEADHAIFIKKMNSLESLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +      +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSVIDIPAFTEEHRFLFVTKNGMTKQSLITNYKPQRYSKSMMAIKLKDDDELLN 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGL 709
           V  + G + + +  +N   L + I +IPE   R  GV+  + K D  +   I     +  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYPITEIPESGARTAGVKAINLKQDDKVVGGIVLSSNDPK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   ++   +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KNNPHRFIG 752


>gi|116511813|ref|YP_809029.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107467|gb|ABJ72607.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 824

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 209/753 (27%), Positives = 393/753 (52%), Gaps = 22/753 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y++++R++Q +    PLI   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D V     +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEISGYLLSDIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+  +EK++E++ GPDFPTGG I++ +  I ++Y  G+G   VR+
Sbjct: 182 NLGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGG-IIQGKGEIRKAYEKGKGRIVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   ++VTEIP+++ K+ L++KI ++ +  ++P + ++RDES  +   +  
Sbjct: 241 KVDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D  L++  +F  +D++  +  NM  +     P    +  +L+ ++ HR +V+ +
Sbjct: 301 ELKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNM-TPVQTGVLQMLRSYVKHREDVIIK 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F +   ++R+ I++GL+     +DE++A IR  +     K  +   F  TE Q +AI
Sbjct: 360 RSQFDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENIKVSFGFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L  +  ++ +++N  +  +N +  E+REVK+ F+K   
Sbjct: 420 VTLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDERTLFNLMKRELREVKKKFAKP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-SVDLSALHFKEGDS 550
             RR     EV   +    +  + E   ++V  S      S +S  S  L  +  ++ D 
Sbjct: 478 --RRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRTSPRSFASSALEEIGKRDDDE 535

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN---QDIVTAFV 607
           L    +A TT  +L+ +  G     P   L   R       L   L++    + ++   +
Sbjct: 536 LLYYANAKTTQHLLIFTNLGNVIYRPIHELSDVRWKDIGEHLSQSLSNFSSDEKVIYVQI 595

Query: 608 YD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDHV 661
            D  +   L+VV+  G    +E            K   + K+  +++++ L+  V    +
Sbjct: 596 VDAFAGENLVVVTRNGQIKQIERESFSPWRTYRSKSTPYAKLKGNDDEIVLISPVQFTDL 655

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            ++ EN   L F++D +P +  R  GV+  + K+        F        +    R++ 
Sbjct: 656 MIISENGYALRFNLDDVPVLGARAAGVKAMNLKNDDKIKAAFFVNSNSWYLL--TQRAFI 713

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +           R   G  V +    +   + +
Sbjct: 714 KRVKTEDIPATSRANRGLQVLRTLKTNNHTVFA 746


>gi|73916870|gb|AAZ93303.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916904|gb|AAZ93320.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 214/747 (28%), Positives = 389/747 (52%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|73916848|gb|AAZ93292.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 214/747 (28%), Positives = 389/747 (52%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|71907479|ref|YP_285066.1| DNA topoisomerase IV subunit A [Dechloromonas aromatica RCB]
 gi|71847100|gb|AAZ46596.1| DNA topoisomerase IV subunit A [Dechloromonas aromatica RCB]
          Length = 805

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 255/746 (34%), Positives = 400/746 (53%), Gaps = 40/746 (5%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
                RYL YA+S +  RA+P   DG KPV RRI++AM  MGL       KSAR+VG+VI
Sbjct: 72  DYAARRYLEYAMSVVTGRALPSAADGQKPVQRRILYAMHRMGLYKSPRHVKSARVVGDVI 131

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHGD SVYD++VR+AQ +  RYP++ GQGNFG+ DGD+AAA RYTEAR+T +AEL+
Sbjct: 132 GKYHPHGDSSVYDAMVRMAQDWSLRYPIVDGQGNFGSRDGDNAAAMRYTEARLTPIAELL 191

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           L  +DE  VD++  Y+  + EP + P++ P  L NG SGIAVGMAT IP+HN++E+  AA
Sbjct: 192 LAELDEGTVDWKPNYDGANDEPALLPARLPFALLNGASGIAVGMATEIPAHNLREVANAA 251

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           + LI NP+   +++L+ I GPD+P G  I+ S E I  +YR GRG  RVRA+W +E + R
Sbjct: 252 VNLIRNPDFGEDEVLKLIPGPDYPGGAQIISSPEEIAATYRSGRGSLRVRAKWKIENLAR 311

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL----------------------EDI 301
           G W +V+TE+P  V  + ++ +I                                    +
Sbjct: 312 GQWKLVITELPPGVSTATVMSEIEACSNPVAKEKAGKKVFTPEQLNLKAAFLSSISESGV 371

Query: 302 RDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES     VR+V+ P +     D L+  +   + +ET   +N+ +L +   P+   L  
Sbjct: 372 RDESGKEHAVRLVIEPASSRQGQDDLVRMLLAHTSLETNASINLTILGVNGTPRQASLYS 431

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           ++ EW   R   + RR+  R+ A ++R+ IL+G     L+ID +I +IR  D PK  +++
Sbjct: 432 MIAEWCRFRLTTVERRTRHRLTAAEKRIHILEGRQAILLDIDRVIKVIRESDDPKADLMA 491

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L+E Q + IL +RLR L +LE  +I  EL  L  E   ++ LL+S +     +A EI
Sbjct: 492 HFKLSEIQAEDILEIRLRQLARLEGIKIGEELAKLREEAAGLNKLLDSEEALRACVAAEI 551

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT     ++   +  +   I  EP T+++S  GW+RS   H++D
Sbjct: 552 EADAKKYGD-----DRRTLIEADAKVTMSDAKTVSIVDEPTTLIVSKHGWLRSRTGHNID 606

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            + L F+ GDSL   L   T D +++L   G+AY++ A ++  G+G G     ++D    
Sbjct: 607 PTQLTFRSGDSLLACLPCRTVDSLIILDHLGRAYSISAADIPGGKGDGVPATSVVDFQDG 666

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             +  A    +  + LV +  G  F  + S+ ++  + GK FL +   E   + +    +
Sbjct: 667 GKLCLALSTSADKRYLVAADGGYGFRCQGSDFLSRGKAGKAFLTLGDGEAPAIFMPAPAE 726

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
             +A V ++ + L+F+I+++  +++G+G++L     G  +      + +G      AG+ 
Sbjct: 727 GEIACVTKDGRALVFNIEEVRLLAKGRGLKLIDAAPGKTALEEIIPVVDG-----VAGKL 781

Query: 719 YNRSENDLLGWLGKRGGVG--SLVPK 742
                  L    G RGG G     P+
Sbjct: 782 KGER---LEICRGNRGGKGKPVKAPR 804


>gi|83745761|ref|ZP_00942818.1| Topoisomerase IV subunit A [Ralstonia solanacearum UW551]
 gi|207743675|ref|YP_002260067.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           IPO1609]
 gi|83727451|gb|EAP74572.1| Topoisomerase IV subunit A [Ralstonia solanacearum UW551]
 gi|206595074|emb|CAQ62001.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           IPO1609]
          Length = 783

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 273/771 (35%), Positives = 416/771 (53%), Gaps = 49/771 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPSEPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  A +ALI + +++   L +Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVATATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQIY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  +VRARW +EE+ RG W +VVTE+P      +++E+I EL   K     + +  
Sbjct: 241 ETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTP 300

Query: 304 E--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           E                        VR+V  PK++++       ++   + +E+   +N+
Sbjct: 301 EQLQLKQTLLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R E + RR+ +R+  ++ R+ IL+G  +  L I+E+
Sbjct: 361 VMIGTDGRPRQKGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIEEV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  D+PK  ++  F+LT+ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D 
Sbjct: 421 IRIIRESDEPKAALIQAFNLTDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + +        RRT   E  RA      +  +  EP+TV+
Sbjct: 481 LLKSETMMRRRIIKEIETDAKQYGD-----DRRTLIQEERRAAA----EVKVIDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD-----GKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I       +   +L+ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTLAGHAEQNVLIATRGGNGFLAKVGDMVGRQKGG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++    V V  D   VA +  N +LL+F + ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPVAVAEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNR-------SENDLLGWLGKRGGVGS 738
             +   + F        +  AG    +       +      + GKR   G 
Sbjct: 712 ETLVQALAFGPA--GFAVSGAGPRSGKAAEQAFTTTRAQGPYAGKRARKGK 760


>gi|116492721|ref|YP_804456.1| DNA topoisomerase IV subunit A [Pediococcus pentosaceus ATCC 25745]
 gi|116102871|gb|ABJ68014.1| DNA topoisomerase IV subunit A [Pediococcus pentosaceus ATCC 25745]
          Length = 817

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 217/760 (28%), Positives = 402/760 (52%), Gaps = 33/760 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++    +  ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G
Sbjct: 1   MADN----QSKIQELALEDIMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNKDG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                AF+KSA+ VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G+ID D 
Sbjct: 57  NTHDKAFRKSAKSVGNVMGNFHPHGDSSIYEALVRMSQDWKLRVPLIEMHGNNGSIDNDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+++ AE +L  +D++ VD    +++ + EP V P++FPNLL NG +GI+ 
Sbjct: 117 PAAMRYTEARLSEAAEEMLNDIDKETVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ E+ +A L  I +P  S+EKL+E++ GPDFPTGG I++    + ++YR 
Sbjct: 177 GYATEIPPHNLGEVIDAVLYTIKHPNPSLEKLMEFVKGPDFPTGG-IIQGINGLKQAYRT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  VEE+      I+V+EIPY+V K+ L++KI E+ + K++  + +IRDES
Sbjct: 236 GKGRVVVRSKTSVEEIRGNKKQIIVSEIPYEVNKALLVKKIDEIRVMKKVDGIAEIRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   +     + +D   ++  +F  +D++  +  NM  ++  R P+ M L  I++ ++
Sbjct: 296 DRDGLSIAIELKKDVDARGILNYLFKNTDLQVSYNFNMVAINKLR-PERMGLKEIIQAYV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
             ++EV+ +R+ F ++  + R+ I+ GL+ A   +D++I  IR     K    +    F 
Sbjct: 355 DFQKEVITKRTKFNLKKAEDRLHIVAGLIKALSILDQVIKTIRGSKDKKDAKQNLITSFD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   +  ++KSE   L    ++ +++LN+  +    ++ E+R+V
Sbjct: 415 FSERQAEAIVSLQLYRLTNTDVTELKSEAKALNDSIDEFNNILNNPNELSKVLSAELRQV 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ ++        R +  +    +    +   + +E + V++S  G+++     S   SA
Sbjct: 475 KKRYATP------RLSEIQEHIEELVVDRTITVPEEQVMVLVSQSGYLKRSSLRSYKASA 528

Query: 543 LHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 +          +T D +++L+  G     P   ++    +  GE I   I L  
Sbjct: 529 EEDGLKEGDFTVFKKELNTLDHLIMLTNKGNLIYRPVHEIMETRWKDTGEHISQAIGLAD 588

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMK 651
           ++ I+ AF    +D     L+ +S G        +        +K   ++K+  ++ K+ 
Sbjct: 589 DEIILKAFDVKNFDEPVSFLIATSDGYIKRTSLKDFKPGRTYRKKAAVYIKLKAADAKVV 648

Query: 652 LVVKVTG----DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKIC 706
            V K+T     + + +   N   L + + ++PE+  R  GV+    ++  I++ +     
Sbjct: 649 NVAKLTSQSTKETILLATRNGYGLRYDLIEVPEVGPRAAGVKSMDLREDEIANFVLVNDH 708

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           + +  I +  R   +        +  R   G  + +   +
Sbjct: 709 DQIGLITN--RGSFKKMKVSEISVTSRARRGVQILRELKK 746


>gi|322375399|ref|ZP_08049912.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C300]
 gi|321279662|gb|EFX56702.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C300]
          Length = 826

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 213/748 (28%), Positives = 384/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTGG I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGG-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+ S  
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATS-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ +T G     P   L   R       L   + + +        
Sbjct: 534 DRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQSITNFETNEEILYA 593

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
                +D        +  G    VE  E         K   + K+  E +++  V  +  
Sbjct: 594 EVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIRL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++ +N   L F+I+++P +  +  GV+  + K                  +    R
Sbjct: 654 DDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKADDALQAAFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIEEIPATSRAKRGLQVLRELK 739


>gi|315282118|ref|ZP_07870598.1| DNA topoisomerase IV, A subunit [Listeria marthii FSL S4-120]
 gi|313614235|gb|EFR87899.1| DNA topoisomerase IV, A subunit [Listeria marthii FSL S4-120]
          Length = 819

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 208/759 (27%), Positives = 392/759 (51%), Gaps = 25/759 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G     
Sbjct: 2   TNPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA R
Sbjct: 62  GFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT 
Sbjct: 122 YTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATD 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI EA +  +DNP  + + +++ + GPDFPTGGII    + I ++Y+ G+G  
Sbjct: 182 IPPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQG-IDGIRKAYQTGKGRV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+     
Sbjct: 241 VVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     +  + + ++  +F  +D++  +  NM  ++  + P++M +  +L  ++ H++E
Sbjct: 301 RIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIN-RKRPELMGIIPMLDAYIDHQKE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQ 427
           ++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + + +  +E Q
Sbjct: 360 IITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTNYDFSEKQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ + 
Sbjct: 420 AEAIVSLQLYRLTNTDIHELQSEAASLAEQISVLEKILGDEAELIAVLKEELAEIKKKYK 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
            +      R T  +    +     + ++  E + V ++  G+++     S    + + L 
Sbjct: 480 TA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELA 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQD 601
            KE D        ++ D +LL ++ G     P   L   R          L  DL+  ++
Sbjct: 534 MKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEE 593

Query: 602 IVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVT 657
           I +A     +    + L V+  G       +        K    +K+  ++++  V  + 
Sbjct: 594 IRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKDDDELLSVHLID 653

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDS 714
           G + + +  +N   L +SI +IPE   R  GV+  + K    +   +     E    + +
Sbjct: 654 GSEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVVGGVVITPNEQKHILLA 713

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
             R   +           R   G L+ +    +  +F+ 
Sbjct: 714 TQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPHRFIG 752


>gi|322517178|ref|ZP_08070061.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           vestibularis ATCC 49124]
 gi|322124237|gb|EFX95753.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           vestibularis ATCC 49124]
          Length = 818

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 203/747 (27%), Positives = 379/747 (50%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 CTEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  
Sbjct: 301 ELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNF-TPRQVGLQKILSSYIAHRRDIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E D+L  +   + +++   +  +N +  E+R++K+ F     
Sbjct: 420 VTLQLYRLTNTDIVTLQNEEDDLREQIATLAAIIGDERTMFNVMKRELRDIKKKFGND-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R +  +           ++I +E   V I+  G+++     S + S +        
Sbjct: 478 ----RRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASMIDEVGKRDD 533

Query: 552 KI---ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
                   A TT  +L+ +        P   L   R           + + + +++++ A
Sbjct: 534 DDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNFSKDEEVLYA 593

Query: 606 FVYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
            + D   T   L  +  G     E  E         K   + K+  + + +  V  +  D
Sbjct: 594 EILDDFETGTYLAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKDDSDFIVTVTPIQLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + ++ +    L F+ D++P +  +  GV+  + KD      +     +    +    R+
Sbjct: 654 DIMIITQKGYALRFNADEVPVVGAKAAGVKAINLKDDDTVQAVFVANTQSFYLL--TQRA 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +          KR G G  V +   
Sbjct: 712 SLKRVATADIPQAKRAGRGLQVLRELK 738


>gi|293390337|ref|ZP_06634671.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950871|gb|EFE00990.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 719

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 265/720 (36%), Positives = 429/720 (59%), Gaps = 22/720 (3%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
            +RA+P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++
Sbjct: 1   MDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAI 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           V +AQPF  RYPL+ GQGN+G +D   S AA RYTE+R++++AE++L  + +  VD++  
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAVDDPKSFAAMRYTESRLSKIAEILLAELGQGTVDYQPN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           ++    EP   P++ P++L NGT+GIAVGMAT IP HN+ EI +AA+ L+DNP+ ++++L
Sbjct: 121 FDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIADAAVMLLDNPKTTLDEL 180

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
              + GPDFPT   I+  +E I + Y+LGRG  ++RA W  E+       IV+  +P+Q 
Sbjct: 181 STVVQGPDFPTEAEIISPKEDIRKIYQLGRGSIKMRATWKKEDGE-----IVIRALPHQS 235

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDM 335
             S++I +IAE + AK++P++EDIRDE+  +   RIVL P++  +D D +M  +F  +D+
Sbjct: 236 SPSKVIAQIAEQMNAKKLPMVEDIRDEADHENPVRIVLVPRSNRVDIDAMMAHLFATTDL 295

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           E  + +NMN++ +   P V  L  IL EWL+ RR  + RR  +R+  +  R+ IL+GL+I
Sbjct: 296 EKSYRVNMNMIGLDHKPAVKNLLEILTEWLSFRRATVTRRLQYRLNKVLARLHILQGLMI 355

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           A+LNIDE+I IIR+ED+PK  +++RF+L++ Q +AILNLRLR L KLEE+++++E   L 
Sbjct: 356 AFLNIDEVIHIIRHEDEPKAELMARFNLSDEQAEAILNLRLRHLAKLEEHELQAEQTELE 415

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            E+  ++ +L S ++    +  EI++  + ++       RR+   E + A KA  +  M+
Sbjct: 416 KERSSLEEILGSERRLNTLLKKEIQQDAKTYASP-----RRSPLVERAEA-KAIAENEML 469

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             EP+TV++S  GW+R  K H +D   L +K GD      +  +    + + + G++Y L
Sbjct: 470 PTEPVTVILSEMGWVRCAKGHDIDPQGLSYKAGDKYLAHAYGKSNQAAVFIDSTGRSYAL 529

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               L S R  GE +   + L     I    + +    LL+ S  G  FI + +++IA  
Sbjct: 530 DPLMLPSARSQGEPLTGKLTLPAGATIDQLLIENEDQPLLMASDAGYGFICKFADLIARN 589

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVV--GENRKLLIFSIDQIPEMSRGKGVRLQSY- 692
           + GK  + +    K+   + +      +V      ++LIF    +PE+S+GKG ++ +  
Sbjct: 590 KAGKALISLPENAKVLPPLTLKNSTALLVALTSAGRMLIFPAQDLPELSKGKGNKIVTIP 649

Query: 693 ----KDGGISDVICFKICEGLTWIDSAGRSY-NRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               K      V    I E  + +  +GR     +  DL  +  +RG  G+ +P+G   +
Sbjct: 650 SANAKARSELLVRLLLIEENSSLVFHSGRRKIVLNPEDLQKFRAERGRKGTQLPRGLHSN 709


>gi|220912389|ref|YP_002487698.1| DNA topoisomerase IV subunit A [Arthrobacter chlorophenolicus A6]
 gi|219859267|gb|ACL39609.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrobacter chlorophenolicus
           A6]
          Length = 836

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 228/776 (29%), Positives = 367/776 (47%), Gaps = 51/776 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T   EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MS+MGL  
Sbjct: 12  DTTPFTENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGLRP 71

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
                KSAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D D  AA
Sbjct: 72  DRGHVKSARVVGEVMGKLHPHGDAAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAA 130

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAVGMA
Sbjct: 131 PRYTEARLAPAALTLTNHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMA 190

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++  HN+ E+  AA  LI NP+ ++E L+ ++ GPD P+GG IV   + I ++Y  GRG
Sbjct: 191 TNMAPHNLVEVISAARHLIANPDATLEDLMRFVPGPDLPSGGRIV-GLDGIRDAYATGRG 249

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE- 307
            F+ RA+  VE++      +VVTE+PY V   ++IEKI + + AK++  + DI D +   
Sbjct: 250 SFKTRAKVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNAKKLTGISDIVDLTDRK 309

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++       +P  +++ ++  + ME  F +N   L     PQ + L  +L  ++ H
Sbjct: 310 HGLRLVIELKNGFNPTAVLQQLYRYTPMEDSFGINNVTLVD-GQPQTLGLVALLSVYVNH 368

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R +V+ RR+ FR+     R+ +++GLLIA ++IDE+I IIR+ D+    +  ++S + LT
Sbjct: 369 RIDVVRRRTIFRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEAAAARERLMSIYDLT 428

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q + IL LRLR L K    +++ E D L  E  +++++LNS +   + ++ E+  + E
Sbjct: 429 EIQANYILELRLRQLTKYSRIELEKEQDQLRREIAELEAILNSEELLRSLVSDELEAISE 488

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQ-------------AMIEKEPITVVISNRGWIR 531
                     RRT   E          +               I  +P   +++  G I 
Sbjct: 489 EHGTP-----RRTILLESEAVSPTVAAELAGSKKGKPAPLALEIADDPCWAILTASGQIG 543

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SG 583
              +      A    + D     +       I  +++ G+   L   ++           
Sbjct: 544 RTSNQEPLAEAGPRNKHDVFTSVVKTSARGEIAAITSQGRMLRLQVMDMPVLPPVAGLPN 603

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              G   +  + L   + +V     D    L + +S+G    V+        R+    + 
Sbjct: 604 MAGGVPAKDFLTLLKGETLVAFAPLDE--VLAIGTSQGVVKRVQPE--YPLNREDWEVIA 659

Query: 644 VSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           +  ++ +  V     D   +  +    +LL F+   +    R   G+       G     
Sbjct: 660 LKDKDFVVGVAPAAADDTELVFLTAQAQLLKFAASAVRPQGRTAGGMAGIKLAAGDRVAF 719

Query: 701 --ICFKICEGLTWIDSAGR---------SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                   E    +  AG             +        +  R   G    +   
Sbjct: 720 FGAVRDQDEAAVVVTIAGTNGALPGTAPGTAKVTAFSEYPVKGRATAGVRAHRFLK 775


>gi|323142727|ref|ZP_08077444.1| DNA topoisomerase IV, A subunit [Succinatimonas hippei YIT 12066]
 gi|322417522|gb|EFY08139.1| DNA topoisomerase IV, A subunit [Succinatimonas hippei YIT 12066]
          Length = 771

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 261/754 (34%), Positives = 435/754 (57%), Gaps = 23/754 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++ N L  E ++ + L    E  YL Y+++ I++RA+P + DG KPV RRII+AM+++G+
Sbjct: 5   TDKNKLSLEGIEQMPLERFAENAYLNYSMNVIRDRALPSVSDGMKPVQRRIIYAMAKLGI 64

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDS 125
              A   KSAR VGEV+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G++ D  S
Sbjct: 65  GPKAKHVKSARTVGEVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGDVEDPKS 124

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE+R++  ++++LQ ++   VDF   ++    EP   P++ PN+L NGT+GIAV
Sbjct: 125 FAAMRYTESRLSIYSDILLQDLNTGCVDFIPNFDGTAEEPKALPARLPNILLNGTTGIAV 184

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP HN+ E+  AA+ L++NPE S+  L++++ GPD+P G  I+  +  +++ Y  
Sbjct: 185 GMATDIPPHNLTEVANAAVYLLENPEASVNDLMQFVQGPDYPCGAEIITPKSDLLKMYET 244

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G  R RA + VE+ G     IVV+ +P+QV   ++ ++IA+L+  K++P++ D+ + S
Sbjct: 245 GKGIVRQRAVYKVEKEG-----IVVSALPFQVSGGQVEKQIADLMAKKKLPMVSDLINAS 299

Query: 306 AED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
             +   R+++ P++  +D D LM  +F ++D+E+ + +N+N+L +   PQV  L  IL E
Sbjct: 300 DHNNPCRLIIVPRSNRIDCDELMNHLFAVTDLESTYRVNLNILGLDGKPQVKNLKQILSE 359

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL  R++ + +R S R+  ++RR+ +L+GLL+ +LN+DE+I IIR E+ PK  ++ RF+L
Sbjct: 360 WLVFRQQTVTKRLSKRLDNVERRLHLLEGLLVVFLNLDEVIRIIREEENPKAKLIERFNL 419

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TE QV+ IL  +LR L +LEE +IK E + LLAEK+K++SLL S  +    I  EI    
Sbjct: 420 TEAQVEYILETKLRQLARLEEMKIKEEQEKLLAEKKKLESLLGSQARLKTFIKKEILADV 479

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           +++        RR    E S A   +    M    P+TV++S  GW+R    ++ D   +
Sbjct: 480 KLYGDE-----RRCPVVERSEAVAFSEDDLM-PSTPVTVILSKMGWVRQASEYNADAEHM 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            ++ GD  K      +  + + ++  G+AY++    L S RG GE +   ++L   +   
Sbjct: 534 TYRAGDGFKDKASGRSNQQAVFITNLGRAYSVDIRELPSARGQGEPLSSKVNLQQGEFAE 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DH 660
              +  S    L+ S K   FI +  +I+   + G+  + + ++ K+   +K++    D 
Sbjct: 594 YVIIGQSNDYFLLASDKAYGFICKYEDILTRLKGGRALVSLDADAKLFAPIKLSDKSSDL 653

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI------SDVICFKICEGLTWIDS 714
           +AV     KLLI+  + +P + RGKG +L S     +         +          I  
Sbjct: 654 LAVASRQGKLLIYKAEDLPVLPRGKGNKLISIAGAKLDMGIDGVAAVAVLPEGSSIIIHC 713

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             R  N S +++   L  R   G  +P+GF +  
Sbjct: 714 GKRILNLSASEITERLSVRTKRGDTLPRGFQKVD 747


>gi|73916908|gb|AAZ93322.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 387/747 (51%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYYAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|323488989|ref|ZP_08094226.1| DNA topoisomerase IV subunit A [Planococcus donghaensis MPA1U2]
 gi|323397381|gb|EGA90190.1| DNA topoisomerase IV subunit A [Planococcus donghaensis MPA1U2]
          Length = 808

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 208/754 (27%), Positives = 380/754 (50%), Gaps = 24/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G     AF+K
Sbjct: 5   ERFQDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYHEGNTNDKAFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R+ L+   GN G++DGDS AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKIRHMLVEMHGNNGSMDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ ++  +L+ +D+  VDF   +++ D EP V P++FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSAISSELLRDIDKRTVDFIPNFDDSDMEPTVLPARFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ +A L  +DNP+ ++ +L+  I GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 185 ALHEVLDAVLMRMDNPQATVAELMTVIKGPDFPTGG-IIQGVDGIKKAYETGKGKIIVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV+TEIP++V K+ +I+KI +    +++  + ++RDES      ++ 
Sbjct: 244 KAEIEPLKGGKEQIVITEIPFEVNKANMIKKIDDHRFDRKLEGISEVRDESDRSGLRIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + +    ++  ++  +D++  +     V    R P +M L  +L  ++ H++EV+ +
Sbjct: 304 ELKKDVQAQGILSYLYKNTDLQVSYNF-NMVAIYKRRPTMMTLQTMLDAYIEHQKEVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +Q    R+ I++GL+ A   +D++I  IR+    +    +    F  +E Q +AI
Sbjct: 363 RSEFDLQKASDRMHIVEGLMKALSILDKVIKTIRSSTDKRDAKNNLIAAFDFSEAQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   ++ E D+L     ++  +L S  +  N I  E+  +++ F++   
Sbjct: 423 VSLQLYRLTNTDITDLQKEEDSLKKTIAELTGILTSSTKLKNVIKKELANIRKQFAEP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R +  E    +    ++ MI  E + V ++  G+++   + S    +      KE 
Sbjct: 481 ----RRSVIEDKIEEITITREIMIPSEEVVVTVTREGYVKRTSTRSYAASNGKDFAMKET 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAF 606
           D L    + +T   IL+ +T G     P   L   +     + +  +I L+ N+ ++  +
Sbjct: 537 DHLLFEGNLNTQHTILIFTTAGNFVFQPINELPDIKWKDLGQHLSSIIQLDANESVLAVY 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-HV 661
               +D+   +L VS  G        +       +    + + S + M     VT +  +
Sbjct: 597 PFENFDADASILTVSKLGQVKRSALKDYQIQRYSRTVKTMNLKSGDAMIYAGLVTKETEL 656

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSY 719
            +       + F ++++P    R  GV+  + K D      I          +    R  
Sbjct: 657 FIGTNQAYGVRFPLEEVPLTGLRTGGVKGVNLKGDDEAVSAILIDPEVKQELVLVTHRGA 716

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
            +         G R   G ++ +    +  + ++
Sbjct: 717 AKKMKLDEFESGSRAKRGVVMLRELKSNPHRVVA 750


>gi|9230561|gb|AAF85901.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 212/748 (28%), Positives = 385/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +    PK  +   +  TE Q +AI
Sbjct: 360 RSPFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADPKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKNFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ ++ G     P   L   R       L   + + +        
Sbjct: 534 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYV 593

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
                +D        +  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 594 EVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 654 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIEEILATSRAKRGLQVLRELK 739


>gi|187923203|ref|YP_001894845.1| DNA topoisomerase IV subunit A [Burkholderia phytofirmans PsJN]
 gi|187714397|gb|ACD15621.1| DNA topoisomerase IV, A subunit [Burkholderia phytofirmans PsJN]
          Length = 774

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 281/769 (36%), Positives = 424/769 (55%), Gaps = 43/769 (5%)

Query: 1   MGVDNISN---SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  DN  +        E +   ++L    E  YL YA+S +K RA+PD+ DG KPV RRI
Sbjct: 1   MDDDNTLDLFTEPPPPEGDF--LTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRI 58

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + AM++MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGN
Sbjct: 59  LFAMNDMGLSDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGN 118

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+ DGD AAA RYTEAR+T +A+L+L  +++  VDF   Y+    EP + P++ P +L 
Sbjct: 119 FGSRDGDGAAAMRYTEARLTPIAKLLLDEINQGTVDFMPNYDGSSEEPRLLPARLPFVLL 178

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG SGIAVG+AT IPSHN++E+  A +A+I NP+I   +L+++I GPDFP G  I+ S  
Sbjct: 179 NGASGIAVGLATEIPSHNLREVAAATVAMIRNPKIEHAELMQHIAGPDFPGGAQIISSDA 238

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------ 291
            I  +Y  GRG  +VRARW +EE+ RG W +V+TE+P      +++E+I E         
Sbjct: 239 EISAAYESGRGSLKVRARWKIEELARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLG 298

Query: 292 ------------AKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
                          + LL+ +RDES     VR+V  PK+  +D    + ++   + +E+
Sbjct: 299 KKALTPEQLQTKQTMLALLDAVRDESGRDAPVRLVFEPKSSRIDQTDFVNTLLAYTSLES 358

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
              LNM ++     P+   L  IL EW+A R   + RR+  R+  +D R+ IL+G +I +
Sbjct: 359 NASLNMVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVF 418

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
           LNIDE+I IIR  D+PK  +++ F L++ Q + IL +RLR L +LE+ +I+ EL  L  E
Sbjct: 419 LNIDEVIRIIRESDEPKVALMAAFGLSDRQAEDILEIRLRQLARLEKIKIEKELAELRDE 478

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           K K++ LL S       +  EI    + +        RRT   +  RA      +A +  
Sbjct: 479 KAKLEELLGSESAMKRLLIKEIEGDAKQYGDE-----RRTLIQQEKRATF----EARVVD 529

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           EP+TVV+S +GW+R+LK H +D++   FK GD L  A    T D ++   ++G+ Y++  
Sbjct: 530 EPVTVVVSQKGWVRALKGHGLDVAGFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAV 589

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
             L  GRG G  +  LI+L     ++  +   +   LL+ SS G  F+ +  ++++  + 
Sbjct: 590 AMLPGGRGDGVPVTSLIELESGSHLLHYYAASAEQALLLASSNGFGFVAKVGDMVSRVKA 649

Query: 638 GKTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           GK+F+ + +       + +  D  H+A +    +LL+F ID++  +   G+GV L +  D
Sbjct: 650 GKSFMTIDAGAAPLKPMPMLPDATHIACLSSGGRLLVFGIDEMKTLSGGGRGVTLMAL-D 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSEN-----DLLGWLGKRGGVGS 738
              + V    I      +    R     E       L   +GKR   G 
Sbjct: 709 DKETLVQALSINNAGVVLIGTRRGGRVDEEKVSGAALAPHIGKRARKGR 757


>gi|332360267|gb|EGJ38080.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK355]
          Length = 817

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 210/747 (28%), Positives = 384/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 RTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 301 ELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV-- 603
           D L     A TT  +L+ ++ G     P   L   R           + + +  ++++  
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
                         +  G    VE  E         K   F K+   E+++  +  +  D
Sbjct: 594 ELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEEDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R 
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +        +  R   G  V +   
Sbjct: 712 SIKRMAVADIPVTSRANRGLQVLRELK 738


>gi|149926251|ref|ZP_01914513.1| DNA topoisomerase IV subunit A [Limnobacter sp. MED105]
 gi|149825069|gb|EDM84281.1| DNA topoisomerase IV subunit A [Limnobacter sp. MED105]
          Length = 773

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 264/762 (34%), Positives = 405/762 (53%), Gaps = 41/762 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           ++     ++ + ++L    E  YL YA+S +K RA+P+  DG KPV RRI++AM+EMGL 
Sbjct: 7   DATPPSGDDSETITLGLYAERAYLDYAISVVKGRALPECADGQKPVQRRILYAMNEMGLG 66

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
             A   KSAR+VG+V+GK HPHGDQ+ YD+LVR+AQ F  RYPLI GQGNFG+ DGD AA
Sbjct: 67  NNAKPVKSARVVGDVLGKYHPHGDQAAYDALVRMAQNFTLRYPLIDGQGNFGSRDGDGAA 126

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T +A+L+L  VD   VDF   Y+    EP + P++ P +L NG SGIAVGM
Sbjct: 127 AMRYTEARLTPIAKLLLDEVDMGTVDFIPNYDGSFQEPKLLPARLPFVLLNGASGIAVGM 186

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN++E+  A + LI +P   ++ ++ ++  PDFP G  I+    ++ E Y  GR
Sbjct: 187 ATDIPPHNIREVAAATIHLIKHPNADLDTIMGHLPAPDFPGGAQIISPASAMKEIYAGGR 246

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--- 304
           G  +VRARW +EE+ RG W +VV E+P     ++++E+I EL   K     + +  E   
Sbjct: 247 GSIKVRARWDIEEMARGQWQLVVKELPPNTSTAKVLEEIEELTNPKVKTGKKGLSTEQQN 306

Query: 305 -----------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
                                VR+V  PK+R++  +     +   + +ET   +N+  + 
Sbjct: 307 LKAQVLAMLDAVRDESGKENAVRLVFEPKSRNVSVEEFSNLLLSHTSLETNTSINLVSID 366

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
               P    L  +L +W+  R+  + RRS  R+  ++ R+ +L+G LIA+LNIDE+I +I
Sbjct: 367 NAGRPGQRGLIAMLLDWIEFRKVCVTRRSQHRLAQVNDRIHVLEGRLIAWLNIDEVIKVI 426

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R  D+PKP ++  F L++ Q + IL +RLR L +LE+ +I+ EL  L  EK  +++LL  
Sbjct: 427 RESDEPKPALIEAFKLSDRQAEDILEIRLRQLARLEKIKIEQELAKLAEEKADLEALLAD 486

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +   +I  EIR+  + +        RRT   E  +A      +  + +EP TV++S +
Sbjct: 487 EGKLKTRIIGEIRKDTDTYGD-----DRRTLIEEAEKA----SVEVKVVEEPTTVIVSQK 537

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSGR 584
            WIR+ + H  D +   FK GD+L  A    TTD   L       GK +++P      GR
Sbjct: 538 FWIRNRQGHGHDAAQFGFKVGDALYAAFECKTTDNTYLFGAGNALGKVFSVPVAAWPGGR 597

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G G   Q L++LN    +  A    +T  + +  S    F+     + +  + GK F+ +
Sbjct: 598 GDGIPAQSLVELNGG-SLSHALAAPATQPVFLACSAAYGFLATAGNMESRMKAGKQFISL 656

Query: 645 SSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVI 701
           +  EK+     +  T D VAV+ E+ +  +F +D++ ++   G+GV+L    D       
Sbjct: 657 NPGEKLLSPALLQPTDDRVAVLSESGRFHVFMLDELKQLSGGGRGVQLLPLDDKDTLVAA 716

Query: 702 CFKICEGLTWIDSAGRSYN-----RSENDLLGWLGKRGGVGS 738
                     +   GR             L   LGKRG  G 
Sbjct: 717 VAFGPADSLVVAGTGRGGKDREEVLKPALLAERLGKRGRKGK 758


>gi|209516132|ref|ZP_03264991.1| DNA topoisomerase IV, A subunit [Burkholderia sp. H160]
 gi|209503416|gb|EEA03413.1| DNA topoisomerase IV, A subunit [Burkholderia sp. H160]
          Length = 773

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 285/766 (37%), Positives = 427/766 (55%), Gaps = 38/766 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  DN  +       +   ++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ A
Sbjct: 1   MDDDNTLDLFNEPPSDSDVLTLGNYAERAYLEYAVSVVKGRALPDVCDGQKPVQRRILFA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+
Sbjct: 61  MNEMGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+T +A+L+L  +D+  VDF   Y+    EP V P++ P +L NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLGEIDQGTVDFMPNYDGSFEEPKVLPARLPFVLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVG+AT IPSHN++E+  AA+ALI +P++S  +L++++ GPDFP GG I+ S   I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAGAAVALIRHPKLSHAELMQHVPGPDFPGGGQIISSEAEIA 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL--- 297
            +Y  GRG  +VRARW +E++ RG W +V+TE+P      +++E+I E I  K       
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQINPKIKLGKKA 300

Query: 298 ---------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                          ++ +RDES     VR+V  PK+  +D    + ++   + +E+  P
Sbjct: 301 LTPEQLQTKQTLLGLVDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAP 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           LNM ++     P+   L  IL EW+A R   + RR+  R+  +D R+ IL+G +I +LNI
Sbjct: 361 LNMVMVGGDGRPRQKGLSEILHEWIAFRFTTVTRRTRHRLSKVDDRIHILEGRMIVFLNI 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I IIR  D+PK  +++ F LT+ Q + IL +RLR L +LE+ +I+ EL  L  EK K
Sbjct: 421 DEVIRIIRESDEPKVALMAAFGLTDRQAEDILEIRLRQLARLEKIKIEKELAELREEKAK 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ LL S      Q+  EI    + +        RRT   +  RA      +A +  EP+
Sbjct: 481 LEELLGSESAMKRQLIKEIEADAKQYGDE-----RRTLIQQEKRATF----EARVVDEPV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV+S +GW+R+LK H +D +   FK GD L  A    T D ++   ++G+ Y++    L
Sbjct: 532 TVVVSQKGWVRALKGHGLDAAGFTFKAGDGLYAAFQCRTPDTLIAWGSNGRVYSVAVAQL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG G  +  LI+L     ++  +   +   LL+ SS G  FI +  ++++  + GK+
Sbjct: 592 PGGRGDGVPVTSLIELESGSHLMHYYAASAEQALLLASSNGFGFIAKVGDMVSRVKAGKS 651

Query: 641 FLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
           F+ + +       + +    + VA +    +LL+F +D++  +   G+GV L    D   
Sbjct: 652 FMTIDAGAAPLAPMPMLPDAEQVACLSSGGRLLVFGLDEMKTLSGGGRGVTLMGL-DDNE 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSEN-----DLLGWLGKRGGVGS 738
           + V    I +    +    R     E      +L   +GKR   G 
Sbjct: 711 TLVQALAINKAGVMLIGTRRGGRVDEEKLAGAELAAHVGKRARKGR 756


>gi|9230565|gb|AAF85903.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 217/748 (29%), Positives = 390/748 (52%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   ++KL+E++ GPDFPTGG I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGG-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI E+ +  ++  +  +RDES  D   + F
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAQVRDESDRDGLRIAF 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L  A    TT  +L+ ++ G     P   L   R           + +   N++I+  
Sbjct: 534 DRLIFAQAVKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D       V+  G    VE  E         K   + K+  E +++  V  +  
Sbjct: 594 EVVDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYKSKTVKYAKLKDETDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++  N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 654 DDVLLISRNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIEEIPATSRAKRGLQVLRELK 739


>gi|15902801|ref|NP_358351.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae R6]
 gi|116515631|ref|YP_816238.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae D39]
 gi|15458351|gb|AAK99561.1| Topoisomerase IV subunit A [Streptococcus pneumoniae R6]
 gi|116076207|gb|ABJ53927.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae D39]
          Length = 826

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 211/748 (28%), Positives = 384/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 244 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 304 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 363 RSRFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 423 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKNFATP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 481 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ ++ G     P   L   R       L   + + +        
Sbjct: 537 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYV 596

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
                +D        +  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 597 EVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 657 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQR 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 715 GSLKRVSIEEILATSRAKRGLQVLRELK 742


>gi|332284680|ref|YP_004416591.1| topoisomerase IV subunit A [Pusillimonas sp. T7-7]
 gi|330428633|gb|AEC19967.1| topoisomerase IV subunit A [Pusillimonas sp. T7-7]
          Length = 767

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 255/753 (33%), Positives = 399/753 (52%), Gaps = 35/753 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++    ++L    E+ YL YA+S ++ RA+P++ DG KPV RRI++AM  MGL  GA   
Sbjct: 12  DQGGDDITLAQYAEQAYLDYAVSVVRGRALPEVADGQKPVQRRILYAMQAMGLGSGAKPV 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGDQ+ YD++VR+AQ FV RYPL+ GQGNFG+ DGD+AAA RYTE
Sbjct: 72  KSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFVLRYPLVDGQGNFGSRDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A ++L  +DE  VDF   Y+    EPV+ P++ P +L NG SGIAVGMAT IPS
Sbjct: 132 ARLTPFARVLLDELDEGTVDFVSNYDGSQKEPVLLPARLPVMLLNGASGIAVGMATEIPS 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +A +ALI NP++  E L   + GPDF  GG I+ S   I   Y  GRG  + R
Sbjct: 192 HNLREVAQACVALIRNPKLPDEDLYTLVPGPDFAGGGQIISSAADIAHIYASGRGSIKAR 251

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--------- 304
           ARW  EE+ RG W +VV E+P      +++E+I +    K     + +  E         
Sbjct: 252 ARWQFEELARGQWQLVVNELPPGTSSQKVLEEIEDRTNPKVKAGKKSLTSEQQQIKALML 311

Query: 305 -----------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
                          VR+V  PK   +D D  +  +   + ME    +N+  +     P 
Sbjct: 312 GLLDAVRDESGKDAAVRLVFEPKTSRIDRDEFVNMLLAQTSMEGSVSINLVCIGTDGRPG 371

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              L  +L EWL  R + + RR+ +R+  +  R+ +L+G ++ YLN+DE+I  IR  D+P
Sbjct: 372 QRALRQVLTEWLGFRAQTMTRRTQYRLDKVTDRIHVLEGRMVVYLNVDEVIQTIRESDEP 431

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++ RF L+E Q + IL +RLR L +LE ++I+ EL     E+  +  LL++      
Sbjct: 432 RAALMQRFDLSERQAEDILEMRLRQLARLEGFKIEKELAAQRDEQAALRELLDNPSAFKR 491

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            +  EI    + +        RRT      RA      +  + +EP+TV+IS RGW+RS 
Sbjct: 492 LMIKEIEADAKQYGD-----DRRTLIEVAERAVL----ENRVVEEPVTVIISQRGWLRSR 542

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           + H  D S  +FK GD L  A+   +TD ++  S  G+ YT+   +L S RG G+ +  +
Sbjct: 543 QGHGHDASQFNFKAGDGLYDAIECLSTDELVAFSNTGRVYTVAVSSLPSARGDGQPVTSM 602

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +++     I       +  + ++ +  G  FI    ++    R GK F+ +   + +   
Sbjct: 603 MEVESGSRITHMIAGAAQQRYVLGTQAGYGFITTLKDLTTRQRAGKQFITLDDGDVLIKP 662

Query: 654 VKV--TGDHVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKDGGISDVICFKICEGLT 710
           +++  T  H+A++ +  + L+ ++ ++      G+G  L     G I         +G+ 
Sbjct: 663 LRLRDTDQHLAMLAKKGRFLVVALSELKRLSGGGRGTILMGLDAGDILAQWVPVGPDGIL 722

Query: 711 WIDSAGRS---YNRSENDLLGWLGKRGGVGSLV 740
                         S + L  +LGKR   G ++
Sbjct: 723 AKGVYRNRDIVETLSLDALGEYLGKRARKGKIL 755


>gi|125624338|ref|YP_001032821.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493146|emb|CAL98110.1| topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071122|gb|ADJ60522.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 824

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 207/754 (27%), Positives = 395/754 (52%), Gaps = 23/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F  +++K
Sbjct: 2   SNIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y++++R++Q +    PLI   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D V     +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEISGYLLSDIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P++ ++K++E++ GPDFPTGG I++ +  I ++Y  G+G   VR+
Sbjct: 182 NLGEVIDATIHMIDHPKVDVDKIMEFLPGPDFPTGG-IIQGKGEIRKAYEKGKGRIVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   ++VTEIP+++ K+ L++KI ++ +  ++P + ++RDES  +   +  
Sbjct: 241 KVDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D  L++  +F  +D++  +  NM  +     P    +  +L+ ++ HR +V+ +
Sbjct: 301 ELKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNM-TPVQTGVLQMLRSYVKHREDVIIK 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F +   ++R+ +++GL+     +DE++A IR  +     K  +   F  TE Q +AI
Sbjct: 360 RSQFDLNKAEKRLHLVEGLIRMVSILDEVVATIRASENKADAKENIKVSFGFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L  +  ++ +++N  +  +N +  E+REVK+ F++   
Sbjct: 420 VTLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDERTLFNLMKRELREVKKKFARP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-SVDLSALHFKEGDS 550
             RR     EV   +    +  + E   ++V  S      S +S  S  L  +  ++ D 
Sbjct: 478 --RRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRTSPRSFASSALEEIGKRDDDE 535

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN---QDIVTAFV 607
           L    +A TT  +L+ +  G     P   L   R       L   L++    + ++   +
Sbjct: 536 LLYYANAKTTQHLLIFTNLGNVIYRPIHELSDIRWKDIGEHLSQSLSNFSSDEKVIYVQI 595

Query: 608 YD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDHV 661
            D  +   L+VV+  G    +E            K   + K+  +++++ L+  V    +
Sbjct: 596 VDAFAGENLVVVTRNGQIKQIERESFSPWRTYRSKSTPYAKLKGNDDEVVLISPVQFTDL 655

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            ++ EN   L F++D +P +  R  GV+  + K+        F        +    R++ 
Sbjct: 656 MLISENGYALRFNLDDVPVLGARAAGVKAMNLKNDDKIKAAFFVNSNSWYLL--TQRAFI 713

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
           +           R   G  V +    +  K  ++
Sbjct: 714 KRVKTEDIPATSRANRGLQVLRTLKTNNHKVFAA 747


>gi|164510809|emb|CAK18888.1| topoisomerase IV subunit A [Staphylococcus intermedius]
          Length = 803

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 217/759 (28%), Positives = 402/759 (52%), Gaps = 27/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M   G  +   F
Sbjct: 1   MAEIIQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ + +D VDF   Y++ + EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEQLLRDIHKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A L  IDNP++++++L++YI GPDFPTGG IV+  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVITATLKYIDNPDLTVKQLMQYIKGPDFPTGG-IVQGIDGIRKAYETGKGKVIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+VTEIPY+V KS L++KI EL   K++  + ++RDE+      V
Sbjct: 240 RAKADIETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++   ++  ++  +D++  +     V      P++M +  I+  +L H+ EV+
Sbjct: 300 AVELKKDVNATSILNFLYKNTDLQVAYNF-NMVAITEGRPKLMGIKPIISSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+SF ++  + R+ I++GL+ A   +DE+I +IRN       K  +V+ +  TE Q +
Sbjct: 359 TRRTSFDLKHTEERMHIVEGLMKALSILDEVIVLIRNSKNKRDAKNNLVATYDFTETQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E D L  +   +  +L +     N I  E+ E+K+ F + 
Sbjct: 419 AIVMLQLYRLTNTDIVALQEEYDELKQKIAALKHILENHDALLNVIKDELSEIKKQFKQP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ ++  E + + ++  G+I+     S        +  K
Sbjct: 479 ------RLSVIEEKISEIKIDKEVIVPSETVMLSLTQAGYIKRTSLRSFNASGKEEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVT 604
           E D +   +  +T D +++ +  G+   +P   L   +     + +  ++ +  ++ +V 
Sbjct: 533 ERDGVLKIIETNTQDYVMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVN 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    ++    ++  + +G       S   +  T K    +KV   + +  V+ V  + 
Sbjct: 593 CYTVSDFNDEHAIITATRQGMIKKSLLSGFKSTRTSKPLVAMKVKEGDALISVMYVPANA 652

Query: 661 ----VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++      L + + ++P+   R  G++  + KD     V+   I    T + + 
Sbjct: 653 ASQCITLLTHRGMSLTYPMSELPDTGLRAAGIKAINLKDEDHV-VLADHIQPQDTILIAT 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPR-SGKFLSS 753
            R   +     +    KR   G  + K   +   + +++
Sbjct: 712 QRGALKRIGFKVLQQAKRAQRGITLLKELKKQPHRVVAA 750


>gi|33602203|ref|NP_889763.1| DNA topoisomerase IV subunit A [Bordetella bronchiseptica RB50]
 gi|33576641|emb|CAE33719.1| topoisomerase IV subunit A [Bordetella bronchiseptica RB50]
          Length = 771

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 263/770 (34%), Positives = 412/770 (53%), Gaps = 47/770 (6%)

Query: 6   ISNSNTL------VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           +S+SN          +  +A++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++
Sbjct: 1   MSDSNQPGLFDGGATDPHEAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM  MGL  GA   KSAR+VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI G GNFG
Sbjct: 61  AMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           + DGD+AAA RYTEAR+T  ++L+L  ++E  VDF   Y+    EP + P++ P +L NG
Sbjct: 121 SRDGDNAAAMRYTEARLTPFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            SGIAVGMAT IPSHN++E+ +A +ALI NP++  E+LL  + GPDF  GG I+     I
Sbjct: 181 ASGIAVGMATEIPSHNLREVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADI 240

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            + Y  GRG  + RARW  EE+ RG W +VVTE+P      +++E+I E+   K     +
Sbjct: 241 AQIYATGRGSLKARARWQFEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKK 300

Query: 300 DIRDE--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            +  E                        VR+V  PK   +D D  + ++   + ME+  
Sbjct: 301 SLSAEQQQAKAVMLSLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNV 360

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
           P+N+  +     P+   L  +L+EW+A R + + RR+  R+  +  R+ +L+G ++ YLN
Sbjct: 361 PVNVVCIGTDGRPRQKSLRDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLN 420

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           +DE+I  IR  ++P+  +++RF LTE Q + IL +RLR L +LE  +I+ EL     E+ 
Sbjct: 421 VDEVIQTIREAEEPRAALMARFGLTERQAEDILEMRLRQLARLEGIKIEQELAGKREEQL 480

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  LL++       +  EI    + +        RRT      RA      +  +  EP
Sbjct: 481 RLQDLLDNPGSLKRLLIKEIEGDAKQYGD-----DRRTLIETAERAVL----ETKVVDEP 531

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +TV++S +GW+R+ + H  D     FK+GD L  A    TTD ++ +  +G+ Y++    
Sbjct: 532 VTVIVSQKGWLRARQGHGHDAGQFSFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVSG 591

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L S RG G+ +  +IDL     IV         + L+ + +G  F    S++ +  R GK
Sbjct: 592 LPSARGDGQPVTTMIDLEAGTRIVHTIAAAPGSRWLLATRRGFGFAARLSDMSSRQRAGK 651

Query: 640 TFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGG 696
            F+ +   +++   V +      +A++    K L+F +D++  +   G+G  L       
Sbjct: 652 QFITLEQGDELLRPVPLFEGATQLALLSAKGKFLVFGLDEVKSLSGGGRGTILMGLDTAD 711

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSEND------LLGWLGKRGGVGSLV 740
             D        G   + +AG   N+   D      L  ++GKR   G  +
Sbjct: 712 KLDQTVPIGAAG---LRAAGIYRNKQTEDILAGAALAPYVGKRARKGRQL 758


>gi|116333452|ref|YP_794979.1| DNA topoisomerase IV subunit A [Lactobacillus brevis ATCC 367]
 gi|116098799|gb|ABJ63948.1| DNA topoisomerase IV subunit A [Lactobacillus brevis ATCC 367]
          Length = 815

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 215/752 (28%), Positives = 390/752 (51%), Gaps = 28/752 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QKIQELTLEEVMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y++L R++Q +  R PL+   GN G++DGD AAA RYTEA
Sbjct: 65  SAKSVGNVMGNFHPHGDSSIYEALTRMSQDWKVREPLVEMHGNNGSMDGDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +D+D V+    +++ + EP V P++FPNLL NG +GI+ G AT IP H
Sbjct: 125 RLSKLAGEMLRDIDKDTVEMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ +P+ ++E+L+ ++ GPDFPTGG I++ ++ IV++Y  GRG   VR+
Sbjct: 185 NLGEVVDALIYLLSHPKATLEELMSFVQGPDFPTGG-IIQGKDGIVKAYETGRGRIVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      I VTEIPY+V K++L++KI E+ + K++  L ++RDE+  D   +  
Sbjct: 244 KTAIEPLRGNKSQITVTEIPYEVNKAQLVKKIDEIRLNKKVEGLAEVRDETDRDGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  D   ++  +F  ++++  +  NM  ++  R P+ + L  IL  +L H+R V+ +
Sbjct: 304 ELKRDADAQGVLNYLFKNTELQITYNFNMVAINHQR-PEHVGLKTILSAYLEHQRNVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R+ + +Q    R  I+ GL+ A   +D++I  IR     +    +    +  +E Q DAI
Sbjct: 363 RTEYNLQKALDRQHIVVGLIKALSILDQVIKTIRASKDRRDARDNLVEAYDFSEKQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q+++E   L AE E+   +L   K   + +  E++ V + +     
Sbjct: 423 VALQLYRLTNTDVTQLEAESAKLSAEIEQDHKILAEPKTLNSVLRQELKAVAKDYRNP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  +    D        +  E + V++S+ G+++     S    D +    K+G
Sbjct: 481 ----RRTEIQNEIEDLKIKTTVTVADEDVVVLVSHDGYLKRSGVRSYTASDPTDNGLKDG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D         T + +++ ++ G     P   +     +  GE I   I L  +++IV  F
Sbjct: 537 DYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISDVKWKETGEHISQTIGLAADEEIVATF 596

Query: 607 VY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFL--KVS-SEEKMKLVVKVT-- 657
            +       + L+ +S G       +++    T K +  +  K+  +E ++  V  +T  
Sbjct: 597 AFKTLKEPGRFLIATSDGYIKQTAFADLTPGRTYKSRAAVYEKLKTAEARVVAVKYLTEP 656

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++ +N   L + +D++     R  GVR    +D      +   + +  T     
Sbjct: 657 VEQGILLISKNGYALRYPVDEVSVNGARTTGVRSMDLRDDDEVVNLAL-VTDNETIALIT 715

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R   +        +  R   G +V +   R 
Sbjct: 716 QRGAFKRLAMKELSVTSRARRGVIVLRELKRD 747


>gi|219113333|ref|XP_002186250.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583100|gb|ACI65720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 818

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 226/756 (29%), Positives = 367/756 (48%), Gaps = 49/756 (6%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           + YALS I  RAIPD RDG KPVHRRI++AM ++ L      +K AR+VGEV+GK HPHG
Sbjct: 1   MQYALSIIMGRAIPDARDGLKPVHRRILYAMDQLSLYPNTGHRKCARVVGEVLGKFHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQGVDE 149
           D +VYD+LVRLAQ F   YPLI G GNFG+ID D AAA RYTE R+T++++  +L+ + +
Sbjct: 61  DMAVYDALVRLAQHFSTAYPLIDGHGNFGSIDADPAAAMRYTECRLTKLSQAALLEDLQD 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   ++  + EP V P+K P LL NG+SGIAVGMAT+IP HN+ EI  A  AL+  
Sbjct: 121 DTVDFLPNFDGNEIEPAVLPAKLPILLLNGSSGIAVGMATNIPPHNLNEIMTACTALVKA 180

Query: 210 PE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +    ++ +KLL+ + GPDFPTG  I+ S     + Y  G GG  +RA   +E++  G 
Sbjct: 181 RQGGAAVTDKKLLQMVPGPDFPTGASIL-STGGTEKLYTTGNGGIVMRAVTKIEKITTGR 239

Query: 266 W------CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   I+VTE+PYQV K+ L+EKIA L+  K++  + D+RDES  D   V+    R 
Sbjct: 240 KSSITRTAIIVTELPYQVNKAALLEKIAGLVNEKKLDGIADLRDESDRDGIRVVIELKRD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-------PQVMPLDGILKEWLAHRREVL 372
               +++ +++  + ++T F  N   L            PQ   L   +  +L  R E +
Sbjct: 300 AVAAVVLNNLYKKTPLQTTFSGNFLALMTANRDSSSSLVPQRFTLRQAMDCFLDFRFETI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
            R+S F++  ++ R  I+ GLL+A   +D +I I+R     +     +      +  Q D
Sbjct: 360 RRKSQFQLTKVNARSHIVAGLLMALDKVDMVIQIVRASADQQAAREALYIELGTSSEQTD 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+L  L +L + +++SE  +L   +E +  LL      ++ +  E  ++ + F   
Sbjct: 420 AILKLQLGQLTRLNKGKLESEKADLEESRESLTHLLEVDDAVYDVMREEFIDMMKRFG-- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----------- 538
              G R+++       D       +IE     +V++  G+I+ +   +            
Sbjct: 478 ---GERKSSII--VEDDGDFCDMDLIENSRSVIVVTRGGYIKRMPLKTFESQGRGTRGKR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
             S         +      +  D +L+++ +G AY L A  +       +   I  ++ +
Sbjct: 533 GTSDGGESADSEVAHCFTCNDHDTLLMVTQNGIAYGLRAYQVPIAGRTAKGQPIPSVLPV 592

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        +     +++ + +G             + +G T   +   +++K  
Sbjct: 593 RGDEVITAILPVSEFSDEEYVVLTTEQGWIKRTPLDAFEKLSSRGLTIATLEDGDRLKWC 652

Query: 654 VKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG-ISDVICFKICEGLT 710
            +V   D + +         F   ++    R  +GVR    ++G  I+D+          
Sbjct: 653 HRVRNEDDILIGTVGGMATRFGAAKLRPTGRTSRGVRAMKLREGDTIADMNVLSGKNKEY 712

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            +    + Y +           RGGVG +  K F R
Sbjct: 713 ILTVTAQGYGKRIATSEFRAQARGGVGVIAIK-FKR 747



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 72/206 (34%), Gaps = 16/206 (7%)

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
              E   V+ + +GWI+        K  S  L+    ++GD LK        D IL+ + 
Sbjct: 607 FSDEEYVVLTTEQGWIKRTPLDAFEKLSSRGLTIATLEDGDRLKWCHRVRNEDDILIGTV 666

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI--VTAFVYDSTCKLLVVSSKGNAFIV 626
            G A    A  L         ++  + L     I  +      +   +L V+++G    +
Sbjct: 667 GGMATRFGAAKLRPTGRTSRGVR-AMKLREGDTIADMNVLSGKNKEYILTVTAQGYGKRI 725

Query: 627 EESEIIANTRKGKTFLKVS-----SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPE 680
             SE  A  R G   + +       E+K+  +  V  D  + V+     ++      IP 
Sbjct: 726 ATSEFRAQARGGVGVIAIKFKRGQEEDKVSCLRIVKDDEEILVITARGIMVRQKASDIPS 785

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKI 705
             R   GV +Q   DG     +    
Sbjct: 786 QGRSATGVMVQRVDDGDHISSVSIVP 811


>gi|187927926|ref|YP_001898413.1| DNA topoisomerase IV subunit A [Ralstonia pickettii 12J]
 gi|187724816|gb|ACD25981.1| DNA topoisomerase IV, A subunit [Ralstonia pickettii 12J]
          Length = 780

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 272/772 (35%), Positives = 418/772 (54%), Gaps = 48/772 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPSEPAEALTLGAYAERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRSDAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  A +ALI + +++   L++Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVAAATVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------ 297
             GRG  +VRARW +EE+ RG W +VV E+P      +++E+I EL   K          
Sbjct: 241 ESGRGSLKVRARWKIEELARGQWQLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSP 300

Query: 298 ------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
                       L+ +RDES     VR+V  PK++++D      ++   + +E+   +N+
Sbjct: 301 DQLTMKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R   + RR+  R+  ++ R+ IL+G  +  L I+++
Sbjct: 361 VMIGTDGRPRQKGLAEILREWIVYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRIEDV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  + PK  ++  F+L++ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D 
Sbjct: 421 IRIIRESEDPKAALIQVFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + +        RRT   E  RA      +  +  EP+TV+
Sbjct: 481 LLKSETMMRRRIIKEIETDAKQYGD-----DRRTFIQEERRAAA----EVKVVDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD-----GKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I   F   +   L++ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTFAGHAEQNLVISTRGGNGFLAKVGDMVGRQKAG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++      V  D   VA + E  ++L+F I ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPAPVPADAYGVACLSEGGRMLLFQISELKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNR------SENDLLGWLGKRGGVGSLV 740
             +   + F        +   G    +      +      + GKR   G  +
Sbjct: 712 EALLQAVAFGAA--GFVLSGTGPRGGKAVEQTMTTRAQEPYAGKRARKGKTL 761


>gi|307729037|ref|YP_003906261.1| DNA topoisomerase IV subunit A [Burkholderia sp. CCGE1003]
 gi|307583572|gb|ADN56970.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1003]
          Length = 774

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 284/769 (36%), Positives = 425/769 (55%), Gaps = 43/769 (5%)

Query: 1   MGVDNISN---SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  DN  +        E +   ++L    E  YL YA+S +K RA+PD+ DG KPV RRI
Sbjct: 1   MDDDNTLDLFTEPPAPEGDF--LTLGNYAEGAYLQYAVSVVKGRALPDVCDGQKPVQRRI 58

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM+E+GL   A   KSAR+VG+VIGK HPHGDQS YD+LVRLAQ F  RYPLI GQGN
Sbjct: 59  LYAMNELGLSDNAKPVKSARVVGDVIGKYHPHGDQSAYDALVRLAQDFAMRYPLIDGQGN 118

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+ DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+  + EP   P++ P LL 
Sbjct: 119 FGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGVEEEPRQLPARLPFLLL 178

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG SGIAVG+AT IPSHN++E+  A +A+I NP+I+  +L++++ GPDFP GG I+ S  
Sbjct: 179 NGASGIAVGLATEIPSHNLREVAAATVAMIRNPKIAHAELMQHLPGPDFPGGGQIISSEA 238

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I  +Y  GRG  +VRARW +E++ RG W +V+TE+P      +++E+I E    K    
Sbjct: 239 EIAAAYETGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLG 298

Query: 298 ------------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
                             L+ +RDES     VR+V  PK+  +D    + ++   + +E+
Sbjct: 299 KKALTPEQLQAKQTMLGLLDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLES 358

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
              LN+ ++     P+   L  IL EW+A R   + RR+  R+  +D R+ IL+G +I Y
Sbjct: 359 NASLNLVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLTKVDDRIHILEGRMIVY 418

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
           LNIDE+I IIR  D+PK  +++ F L++ Q D IL +RLR L +LE+ +I+ EL  L  E
Sbjct: 419 LNIDEVIRIIRESDEPKVALMAAFGLSDRQADDILEIRLRQLARLEKIKIEKELAELRDE 478

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           K K++ LL S       +  EI    + +        RRT   +  RA      +A +  
Sbjct: 479 KAKLEELLGSESAMKRLLIKEIEADAKQYGDE-----RRTLIQQEKRATY----EARVID 529

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           EP+TVV+S +GW+R+LK H +D +   FK GD L  A    T D ++   ++G+ Y++  
Sbjct: 530 EPVTVVVSQKGWVRALKGHGLDTAGFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAV 589

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            +L  GRG G  +  LI+L     ++  +   +   LL+ SS G  FI +  ++++  + 
Sbjct: 590 ASLPGGRGDGVPVTSLIELESGSHLMHYYAASADQALLLASSNGFGFIAKVGDMVSRVKA 649

Query: 638 GKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           GK+F+ + +       + +      VA +    +LL+F ID++  +   G+GV L +  D
Sbjct: 650 GKSFMTIDAGAVPLAPMPLLPDASQVACLSSTGRLLVFGIDEMKTLSGGGRGVTLMAL-D 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSEN-----DLLGWLGKRGGVGS 738
              + V    I      +  A R     E       L   +GKR   G 
Sbjct: 709 DKETLVQALAINGAGVMLIGARRGGRLDEEKLSGAALAAHVGKRARKGR 757


>gi|15837954|ref|NP_298642.1| DNA topoisomerase IV subunit A [Xylella fastidiosa 9a5c]
 gi|9106353|gb|AAF84162.1|AE003967_6 topoisomerase IV subunit [Xylella fastidiosa 9a5c]
          Length = 749

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 275/758 (36%), Positives = 430/758 (56%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P + DG KPV RRII+AM E+ 
Sbjct: 1   MTDLTRPSFHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKS R VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T ++E++L  + E  V++   ++    EP   PS+ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A + L+DNP  +I  L +YI GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQNLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE--DIR 302
            G G  R RA +  E+       +V+T +PYQV  S++IE+IA+ I +K++P L+   +R
Sbjct: 241 TGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVR 295

Query: 303 DESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES      RIVLFP+++ +D + LM  +F  +D+E    +N+NV+ +   PQV PL  +
Sbjct: 296 DESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL+ R + +  R  +R+Q ++ R+ +L+GLLIA+LN+D++I IIRNED+PKPV+++R
Sbjct: 356 LSEWLSFRSDTVTHRLKYRLQKVESRLHLLEGLLIAFLNLDKVIHIIRNEDEPKPVLIAR 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L++ Q + IL+ +LR L +LEE  I++E D L  E+++I+ +L+S  Q    I  E+ 
Sbjct: 416 FGLSDAQTEYILDTKLRQLARLEEMAIRNEQDALTKERDEINVILDSDIQLKKLIKDELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
              + F  +      R       +A +A  +  ++  EP+TVV+S +GWIR+ K H VD 
Sbjct: 476 ADAKTFGDA------RRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHEVDP 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S + ++EGD L  A+   +T ++  L ++G+AY+     L S RG+GE +          
Sbjct: 530 SGMSYREGDRLLAAVRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEPLTGRFSPAPGA 589

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
                   D+    ++ SS G  FI     +    + GKT + ++   ++  +  +T   
Sbjct: 590 SFQAMASADNDKLFVLASSHGYGFITRFENLTGRNKAGKTMIHLTPGAQVMGLAPLTDVR 649

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICEGLTWI 712
            D +  V     LL  +  ++PE+ +GKG +L            +  VI       L  +
Sbjct: 650 HDRIVAVTSAGNLLAIAASELPELDKGKGNKLIDIPKTKLATERLVAVIAVASSHTL-LL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            S  R+   S  DL  +L  RG  G L+P+G+ +    
Sbjct: 709 YSGERTMRLSFKDLEAYLDTRGSRGHLLPRGWQKIDTL 746


>gi|309389292|gb|ADO77172.1| DNA gyrase, A subunit [Halanaerobium praevalens DSM 2228]
          Length = 794

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 240/756 (31%), Positives = 393/756 (51%), Gaps = 34/756 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++E +  +++   +++ YL Y+LS I  RA+PD+RDG KPVHRRI+ A  E+GL    A 
Sbjct: 1   MKEEIYPIAIEDKMKDAYLNYSLSVIIGRALPDVRDGLKPVHRRILFAARELGLFHSKAH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VGEV+GK HPHGD +VYD++VR+AQ F QRY LI GQGNFG+IDGDSAAA RYT
Sbjct: 61  KKSARLVGEVLGKFHPHGDSAVYDAMVRMAQDFNQRYQLIDGQGNFGSIDGDSAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++T++AE +L  +D+  V+F D ++    EP V PSK PNLL NG+SGIAVGM+TSIP
Sbjct: 121 ETKLTEIAEALLANIDQKTVNFVDNFDGSLQEPEVLPSKIPNLLVNGSSGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            HN+ E+ +A + L+D P   +E  +  ++ GPDFPTG  I+   + I  +Y+ G+G   
Sbjct: 181 PHNLGEVIDALVHLLDYPNARLETIIKNHLPGPDFPTGASII-GNDGIKAAYQSGKGKIT 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E  +    +++TEIPYQV KS+LIE+IAEL+   +I  + D+RDES +    
Sbjct: 240 LRAKSKI-EKKKRHKNLIITEIPYQVNKSKLIEEIAELVNKGKISSVSDLRDESDKKGIR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++     + DP+L +  ++  ++++  F +N+  ++  + P VM L  IL  +L  R+E+
Sbjct: 299 IVIELKANADPELTLNRLYKYTNLQNNFRINLLAIND-KKPVVMGLLEILNHFLDFRKEI 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQV 428
           +   S + +   + R  IL+GL  A   +D +I +IRN +  K     +V +  ++E Q 
Sbjct: 358 IKNHSKYNLTKAENRYHILEGLKKAIDQLDIVIDVIRNSEAKKEAKAKLVKKLKISERQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +IL ++L+ L  +E  ++++E  +L  + +   ++LN+ ++  + +  E++E+K+ FS 
Sbjct: 418 QSILEMQLQRLVGMEFEKLEAEKKDLAQKIKYYKNILNNEEELKSVLRAELKEIKKKFSD 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RRT         + T    + EK    + +S RG I+    +      L   + 
Sbjct: 478 P-----RRTDIIADDSKAEITKNDLIKEK-KAIISLSYRGIIKRNDEYK----NLRTAKN 527

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606
           D L   +   + D++L  S  G+ Y L   N+        GE +   + +  N+ I+   
Sbjct: 528 DYLISTVGGSSLDQLLFFSNQGEVYNLQVHNIEEHHGLATGENLSKYLQIPINESIIDLN 587

Query: 607 VYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
           +               V+  G     E  E   N       +K+   +++  V K     
Sbjct: 588 ILSKNKAKTKNKYYTFVTENGLIKRTEVDEYRTNYSH-IRAIKLDE-DQLVNVEKTDEAS 645

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWIDSAGR 717
            + V+ +   L+ F         R   G R  +  K+  +     F        I  +  
Sbjct: 646 DLIVISKKGYLIRFKGSSFSTTGRNTLGSRAINLIKNDKVLYFSTF--ENNSFIISISEN 703

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                         KR G G+ +     +S K   +
Sbjct: 704 GRANKIKLSEFETQKRNGKGNRIF--SNKSYKLAGA 737



 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMK 651
           I+L  N  ++    +++   ++ +S  G A  ++ SE     R GK        S +   
Sbjct: 677 INLIKNDKVLYFSTFENNSFIISISENGRANKIKLSEFETQKRNGKGNRIFSNKSYKLAG 736

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
            V    GD + +  +N ++    +DQIPE S  
Sbjct: 737 AVKAKAGDKILIAAKNGEIYEIEVDQIPETSPA 769


>gi|228902096|ref|ZP_04066260.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 4222]
 gi|228966491|ref|ZP_04127544.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228793213|gb|EEM40763.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857522|gb|EEN02018.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 4222]
          Length = 807

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 214/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  +E V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    + ++ + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ S+L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKILELQSILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL ++ G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
              V     +    ++ V+  G     E ++       +    + +   +++  +    G
Sbjct: 593 WVTVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKGDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|73916874|gb|AAZ93305.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916924|gb|AAZ93330.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 214/748 (28%), Positives = 389/748 (52%), Gaps = 28/748 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-EDIRDESAEDVRIVLF 314
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  +  ++RDES  D   +  
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAAEVRDESDRDGLRIAI 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 300 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 359 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 419 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 477 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + +   N++I+  
Sbjct: 533 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 592

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D       V+  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 593 EVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 653 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 711 GSLKRVSIEEILATSRAKRGLQVLRELK 738


>gi|218898690|ref|YP_002447101.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9842]
 gi|218545498|gb|ACK97892.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9842]
          Length = 807

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 214/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  +E V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    + ++ + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ S+L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKILELQSILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL ++ G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
              V     +    ++ V+  G     E ++       +    + +   +++  +    G
Sbjct: 593 WVTVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKGDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|312864636|ref|ZP_07724867.1| DNA topoisomerase IV, A subunit [Streptococcus downei F0415]
 gi|311099763|gb|EFQ57976.1| DNA topoisomerase IV, A subunit [Streptococcus downei F0415]
          Length = 828

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 215/749 (28%), Positives = 378/749 (50%), Gaps = 30/749 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 11  SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 71  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D+D V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 131 RLSEIAGYLLQDIDKDTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+  ++KL+E++ GPD PTG  I++  + I ++Y  G+G   VR+
Sbjct: 191 NLAEVIDAVIYMIDHPKAKVDKLMEFLPGPDLPTGA-IIQGADEIRKAYETGKGRIVVRS 249

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   IVVTEIPY V K+ L++KI ++ I  ++P + ++RDES  +   +  
Sbjct: 250 RTEIEPLKAGKEQIVVTEIPYDVNKAVLVKKIDDVRINNKVPGIAEVRDESDREGLRIAI 309

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + +  IL  ++AHRR+++  
Sbjct: 310 ELKKDADSQAILNYLLKYTDLQINYNFNMVAIDNF-TPRQVGIVPILTSYIAHRRDIIVA 368

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR+ +     K  +   +  TE Q +AI
Sbjct: 369 RSKFDKKKAEKRLHIVEGLIRVLSILDEVIALIRDSENKADAKENLKVSYDFTEEQAEAI 428

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  E   + +++   +  +N +  E+REVK+ F     
Sbjct: 429 VTLQLYRLTNTDIVTLEEEDAALREEIATLKAIIGDERTMFNLMKRELREVKKKFGNP-- 486

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+++     S +      L  ++ 
Sbjct: 487 ----RRSELQAQAQAIEIDTASLIVEEDTYVSLTRSGYLKRTSPRSYNASTPEELGKRDD 542

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D   +   A TT  +L+ +  G     P   L   R       L   L +          
Sbjct: 543 DKAVLIAPAKTTQHLLIFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLTNFATDEEVLYA 602

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEIIA----NTRKGKTFLKVS-SEEKMKLVVKVT 657
                +        V+  G    V+ +E        T+  K   K+   E+++  +  + 
Sbjct: 603 EIIDDFTPETY-FAVTKMGQIKRVDRTEFQPWRSYKTKSSKYA-KLKGDEDQVVAMAPIK 660

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            D V V+ E    L F I+++P +  +  GV+  + KDG           +    +    
Sbjct: 661 LDAVMVITEKGYALHFPIEEVPVVGSKAAGVKAINLKDGDSVKAAFIANTKSFFIL--TQ 718

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           R   +        L KR G G  V +   
Sbjct: 719 RGSLKRMALDDIPLAKRAGRGLQVLRELK 747


>gi|24379629|ref|NP_721584.1| DNA topoisomerase IV subunit A [Streptococcus mutans UA159]
 gi|24377581|gb|AAN58890.1|AE014957_3 topoisomerase IV, subunit A [Streptococcus mutans UA159]
          Length = 818

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 202/757 (26%), Positives = 388/757 (51%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++K
Sbjct: 2   SNIQIMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A+ +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIADYLLQDIDKNTVAWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + LID+P   ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDTVVYLIDHPSAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   IV TEIPY+V K+ L++KI ++ +  ++P + ++RDES  +   +  
Sbjct: 241 RTEIENLKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDREGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  +  NM  +     P+ + +  +L  ++AHR++++  
Sbjct: 301 ELKKDADEQTILNYLFKYTDLQINYNFNMVAID-NYTPRQVGIIPMLTSYIAHRKDIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L      +++++   +  +N +  E+REVK+ F     
Sbjct: 420 VTLQLYRLTNTDIVTLENEEAELRERITTLNAIIGDERTMYNVMKRELREVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+I+     S +   +  L  ++ 
Sbjct: 478 ----RLSELQAETQTIEIDTASLIVEEETYVSVTRGGYIKRTSPRSFNASTVEELGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDI--V 603
           D +    +A TT  +L+ +  G     P   L   R           + +   +++I  V
Sbjct: 534 DDVIFIQNAKTTQELLIFTNLGNVIYRPIHELADIRWKEIGEHLSQNITNFATDEEILYV 593

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEI----IANTRKGKTFLKVS-SEEKMKLVVKVTG 658
               +         +  G     E  ++       ++  K   K+   ++++  +  +  
Sbjct: 594 DLVDHFEEGTYYAATRLGQIKRFERRDLTPWRSYKSKAAKYA-KLKGDDDQVIRISPIKL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++      L F+I+++P +  +  G++  + K+G           + +  +    R
Sbjct: 653 DDVMLITARGYALRFNIEEVPIVGPKAAGIKAINLKEGDSLATAFIANTDSIYIL--TQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              +     L  +  R   G  V +    +  +  ++
Sbjct: 711 GSLKRMTTNLIPVTSRAKRGLQVLRELKSKPHRVFAA 747


>gi|300863985|ref|ZP_07108894.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506]
 gi|300338016|emb|CBN54040.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506]
          Length = 868

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 239/818 (29%), Positives = 384/818 (46%), Gaps = 75/818 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++    L    V + +L   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G
Sbjct: 1   MAKQLNLFSGQVISTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     ++K AR+VG+V+GK HPHGDQSVYD+LVR+ Q F  RYPL++G GNFG++D D 
Sbjct: 61  LTPDRPYRKCARVVGDVLGKYHPHGDQSVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDP 120

Query: 126 AAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE R+  +    +L  V E  VDF D ++    EP V P++ P LL NG SGIA
Sbjct: 121 PAAMRYTETRLASICHEAMLTQVGEATVDFSDNFDSSQQEPTVLPAELPFLLLNGCSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALID P++S EKLL  I GPDFPTGG I+ S E I ++Y 
Sbjct: 181 VGMATNIPPHNLNEVVDGLIALIDTPDLSDEKLLALIPGPDFPTGGEII-STEGITDAYT 239

Query: 245 LGRGGFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            G+G   VR    +EE+      R    IVVTE P+QV K+  IEK+AEL+   RI  + 
Sbjct: 240 KGKGSIAVRGVTRMEEIPAARRTRSKMAIVVTEFPFQVNKAGWIEKVAELVNQGRIEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  +   V+    R   P  ++  ++  +D++  F   +  L     P+ + L  
Sbjct: 300 DLRDESDREGIRVVIEIKREFSPQTVLSRLYHQTDLQCNFGAILLALV-NGQPRQLTLRQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPV 416
           +L+E+L  R   L RR +  +Q   RR  I++GLL+         +I+    +    K  
Sbjct: 359 MLQEFLNFREVTLTRRYNHELQVAVRRCHIVEGLLLVLGNLDAAIDILRNAPDGSTAKQG 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           + SR + +E+Q DAIL + +R L  LE   +++E D L+A  +++  LL   ++    + 
Sbjct: 419 LQSRLNFSESQADAILAMPMRRLTGLERQNLQAEFDELMATIQELQRLLGDRRELLKALK 478

Query: 477 CEIREVKEIFSKSTDLG------------------------------------------- 493
            E+R +K  +                                                  
Sbjct: 479 KELRSLKRKYGDPRRTRLVTVEQGSGGAPEQGSRGAREQGSGGAEGRGSRGAGEQRGGEG 538

Query: 494 -RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
            ++ T     S + + +    +       V           K+H     +    E D   
Sbjct: 539 KKKATQLPVTSVSTEPSEATVLEFTHKQYVRRLASAESSRGKNHDKSAQSRG-GESDFSV 597

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL-----------NHNQD 601
             + A T + + +L+  GKAY L   ++ +         ++  L           N  + 
Sbjct: 598 NTIQARTNENLAILTRTGKAYPLKISDIPTVGNRDRGTPIISLLSPSATKDVAPGNLPEI 657

Query: 602 IVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
           +   FV         L+ ++ +G    +  SE+   T +G T +K+  +++++  +    
Sbjct: 658 VAGMFVLSENADATDLVTLTQQGKIKRLPLSELSDITNRGVTAVKLKDDDELRYAMLSKP 717

Query: 658 GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           G+ V +     +LL F ++   +P M R  +G +    +      V C  +    + +  
Sbjct: 718 GEQVVLATSGGRLLRFELNDEQLPPMGRAAQGSQATRLRK-QEQLVGCITLAADGSLLLV 776

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +   + +        L  RG +G+            + 
Sbjct: 777 SELGWAKRMPVGSVRLTGRGEIGTQAFHFAEPKDALVG 814


>gi|90961849|ref|YP_535765.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius UCC118]
 gi|90821043|gb|ABD99682.1| Topoisomerase IV subunit A [Lactobacillus salivarius UCC118]
          Length = 808

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 226/761 (29%), Positives = 401/761 (52%), Gaps = 29/761 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  A
Sbjct: 2   PTERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGDS AA RY
Sbjct: 62  FRKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++Q+A  +LQ +D+  VD    +++ + EP V P++FPNLL NG +GI+ G AT I
Sbjct: 122 TEARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EAA+ LI++P  S++ L+++I GPDFPTGGI+    + I ++Y  GRG   
Sbjct: 182 PPHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQ-GIDGIKKAYETGRGRAV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R++  +E++      I+VTEIPY+V KS L+++I  L I K++  + ++RDES  +   
Sbjct: 241 LRSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDGLRILKKVEGISEVRDESDREGLR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    ++ +   ++  +F  +D++  +  NM  ++  + P+ + L  IL+ +L H+REV
Sbjct: 301 VVIELKKNANAQGILNYLFKNTDLQVSYNFNMVAIN-NKRPEHVGLKTILEAYLEHQREV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
             RR+ F ++    R  I+KGL+ A   +D++I  IR        K  +VS FS TE Q 
Sbjct: 360 TTRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E + L       +++L + K+    I  E+  + + +  
Sbjct: 420 EAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKYGS 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                  R T  +   +      + M+ +E + +++S+ G+++     S    D      
Sbjct: 480 E------RLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGL 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIV 603
           K+ D   +    +T   + + +  G     P         +  GE +   + L +++ I+
Sbjct: 534 KDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLGNDEYIL 593

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKV 656
            AFV+   D   K L+ + +G    V+ +++        +   ++K+ ++ +++  V +V
Sbjct: 594 NAFVFENIDQDAKFLIATKEGYIKQVKLADLKPGRTYKTRASRYIKLKTDVDEVISVSQV 653

Query: 657 TGD--HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
             D   V         L +S+D++P       GV+    +D  +++VI     + ++ I 
Sbjct: 654 ESDKSQVFCASYTGYGLKYSLDEVPTNGVLAAGVKCMDLRDDTLANVILVSESDEVSII- 712

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              R   +        L  R   G  + +    +  + + +
Sbjct: 713 -TQRGSYKKMKVADVPLTTRARRGVQILRELKTKPHRIIFA 752


>gi|227510436|ref|ZP_03940485.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190088|gb|EEI70155.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 812

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 212/752 (28%), Positives = 386/752 (51%), Gaps = 28/752 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             ++ +SL   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +  AF+K
Sbjct: 2   SKIENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L+ +D+D VD+   +++ + EP V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L L  +P+ +++ L++++ GPDFPTG  IV+  + I ++Y  GRG   VR+
Sbjct: 182 NLGEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGA-IVQGIDGIKKAYETGRGKVIVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IVV+EIPY+V K++L+++I EL + K++  + ++RD+S  +   ++ 
Sbjct: 241 KTKIEPLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKKVDGISEVRDQSDREGMSIVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R +D   ++  +F  +D++  +  NM  +   R P+ + L  IL  +L  ++EV+ +
Sbjct: 301 ELKRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMR-PERLSLKQILVSYLEFQQEVIKK 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F +Q    R  I++GL+ A   +D++I  IR        +  +V  +  +E Q DAI
Sbjct: 360 RTQFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVKTYQFSEKQSDAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q++ E   L  +      +L   K+    +A E+R + + +     
Sbjct: 420 VALQLYRLTNTDVTQLEKESQELSDKITGFKKILADPKELNKVLARELRAIAKNYRNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--SALHFKEGD 549
               R T  +   A        +I  E + V++S+ G+I+     S     +    K+ D
Sbjct: 478 ----RRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRSSIRSYKASGNENGLKDED 533

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
                   +  D + + ++ G     P      +  +  GE I   I L+++++I+  F 
Sbjct: 534 YPIFMRQMNARDHLFMFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFA 593

Query: 608 Y---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL---KVSSEEKMKLVVKVTGD-- 659
           +         L+ +  G+    + +++       K      K+   E   + +    D  
Sbjct: 594 FSSLKEKGVFLIATDDGHIKRTKLTDLAPGRTYKKHAYMYEKLKDPESRIVAIDYLADPD 653

Query: 660 ---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++ +    L + ID++P    R  GV+ Q+  DG +   +   + +        
Sbjct: 654 ASGKLLLISKLGLALRYGIDEVPINGARTTGVKSQNLADGDVITNLKL-VNDDDVIAIVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R   +           R   G ++ +   ++
Sbjct: 713 QRGAFKKLAVKEIPATSRARKGVMILRELKQN 744


>gi|238767642|dbj|BAH66656.1| DNA topoisomerase IV subunit A [Lactobacillus brevis]
          Length = 815

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 215/752 (28%), Positives = 390/752 (51%), Gaps = 28/752 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QKIQELTLEEVMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y++L R++Q +  R PL+   GN G++DGD AAA RYTEA
Sbjct: 65  SAKSVGNVMGNFHPHGDSSIYEALTRMSQDWKVREPLVEMHGNNGSMDGDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +D+D V+    +++ + EP V P++FPNLL NG +GI+ G AT IP H
Sbjct: 125 RLSKLAGEMLRDIDKDTVEMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ +P+ ++E+L+ ++ GPDFPTGG I++ ++ IV++Y  GRG   VR+
Sbjct: 185 NLGEVVDALIYLLSHPKATLEELMSFVQGPDFPTGG-IIQGKDGIVKAYETGRGRIVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      I VTEIPY+V K++L++KI E+ + K++  L ++RDE+  D   +  
Sbjct: 244 KTAIEPLRGNKSQITVTEIPYEVNKAQLVKKIDEIRLNKKVEGLAEVRDETDRDGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  D   ++  +F  ++++  +  NM  ++  R P+ + L  IL  +L H+R V+ +
Sbjct: 304 ELKRDADAQGVLNYLFKNTELQITYNFNMVAINHQR-PEHVGLKTILSAYLEHQRNVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R+ + +Q    R  I+ GL+ A   +D++I  IR     +    +    +  +E Q DAI
Sbjct: 363 RTEYNLQKALDRQHIVVGLIKALSILDQVIKTIRASKDRRDARDNLVEAYDFSEKQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q+++E   L AE E+   +L   K   + +  E++ V + +     
Sbjct: 423 VALQLYRLTNTDVTQLEAESAKLSAEIEQDHKILAEPKTLNSVLRQELKAVAKDYRNP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  +    D        +  E + V++S+ G+++     S    D +    K+G
Sbjct: 481 ----RRTEIQNEIEDLKIKTTVTVADEDVVVLVSHDGYLKRSGVRSYTASDPTDNGLKDG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D         T + +++ ++ G     P   +     +  GE I   I L  +++IV  F
Sbjct: 537 DYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISDVKWKETGEHISQTIGLAADEEIVATF 596

Query: 607 VY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFL--KVS-SEEKMKLVVKVT-- 657
            +       + L+ +S G       +++    T K +  +  K+  +E ++  V  +T  
Sbjct: 597 AFKTLKEPGRFLIATSDGYIKQTAFADLTPGRTYKSRAAVYEKLKTAEARVVAVKYLTEP 656

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++ +N   L + +D++     R  GVR    +D      +   + +  T     
Sbjct: 657 VEQGILLISKNGYALRYPVDEVSVNGARTTGVRSMDLRDDDEVVNLAL-VTDNKTIALIT 715

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R   +        +  R   G +V +   R 
Sbjct: 716 QRGAFKRLAMKELSVTSRARRGVIVLRELKRD 747


>gi|73916900|gb|AAZ93318.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 213/747 (28%), Positives = 388/747 (51%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|300311159|ref|YP_003775251.1| DNA topoisomerase IV subunit A [Herbaspirillum seropedicae SmR1]
 gi|300073944|gb|ADJ63343.1| DNA topoisomerase IV (subunit A) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 771

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 287/775 (37%), Positives = 426/775 (54%), Gaps = 46/775 (5%)

Query: 6   ISNSNTLVEE-----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +++  TL ++     + ++++L    E  YL YA+S +K RA+PD+ DG KPV RRI++A
Sbjct: 1   MTDQPTLFDQVPSAPDGESLTLSTFAERAYLDYAISVVKGRALPDVADGQKPVQRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+ L+  A  +KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI G GNFG+
Sbjct: 61  MNELSLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+T +++L+L  +D   V+F+  Y+    EP + P++ P LL NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDMGTVEFQPNYDGSTEEPRLLPARLPFLLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT IPSHN+ E+ +AA+A+I NP+IS  +L+E I GPDFP GG I+  + +I 
Sbjct: 181 SGIAVGMATEIPSHNLTEVAKAAVAMIRNPKISHAELMELIPGPDFPGGGQIITPQATIA 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL--- 297
           E Y+ GRG  +VRARW +E++ RG W  V+TE+P  V   R++E+I EL   K       
Sbjct: 241 EMYQSGRGSLKVRARWKIEDLARGQWQAVITELPPGVSSQRVLEEIEELTNPKVKLGKKS 300

Query: 298 ---------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                          L+ +RDES     VR+V  PK+++ D    M ++   + +ET   
Sbjct: 301 LTPEQQAQKAAILGLLDAVRDESGRDAPVRLVFEPKSKNQDQTEFMNTLLAQTSLETSAS 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           LN+ ++     P+   L  IL EW++ R E + RR+ FRMQ ++ R+ IL+G     LNI
Sbjct: 361 LNLVMIGGDGRPRQKNLTDILSEWISFRFETVTRRTQFRMQKVNDRIHILEGREAVLLNI 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           D++I IIR  D+PKP ++  F L++ Q + IL +RLR L +LE  +I+ EL  L  EK  
Sbjct: 421 DKVIRIIRESDEPKPALIEAFRLSDRQAEDILEIRLRQLARLEAIKIQQELAELRNEKST 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL++       +  EI    + +  +     RRT   E  RA      +  +  EP+
Sbjct: 481 LQDLLDNPSSMKKLVIKEIEGDAKTYGDA-----RRTIIEEAERATF----EQKVIDEPV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TV+IS +GW+R+   H  D +   FK GDSL  A    T D +L   ++G+ YT+    L
Sbjct: 532 TVIISQKGWVRARTGHGHDATQFTFKAGDSLYGAFECRTVDNLLAFGSNGRVYTIAVNAL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
            + RG G  +  L++L     I+  F   +   LL+ S     FI + S++    + GK+
Sbjct: 592 PNARGDGVPVTTLLELASGSSILHYFAGPADTTLLLASDAAAGFIAKASDMFGRVKGGKS 651

Query: 641 FLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
           F  +           V  D   VA V  N +LL+F +D++  +S  G+GV L   +    
Sbjct: 652 FFTLDEGALPLAPTPVPTDASAVACVSGNGRLLVFGLDEMKTLSSGGRGVNLMELEKNEK 711

Query: 698 SDVICFKICEGLTWIDSAGR-SYNRSEND----LLGWLGKRGGVGSLV---PKGF 744
             V    I +    +   G     +        L   +GKR   G  +    K  
Sbjct: 712 L-VAAQAISQKGVVVYGTGNVGKAKEIALSAVSLALHIGKRARKGKALESRIKVT 765


>gi|283458283|ref|YP_003362902.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
 gi|283134317|dbj|BAI65082.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
          Length = 841

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 219/774 (28%), Positives = 365/774 (47%), Gaps = 38/774 (4%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
               +S+    V EN+  + +   +E  +L Y+ S I  RA+PD RDG KPV RRI++ M
Sbjct: 5   SKSAVSDYPVDVVENIVDIDVSAEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILYMM 64

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            +MGL       KSAR+ GEV+GKLHPHGD ++YD++VRLAQPF  R PL+ G GNFG++
Sbjct: 65  QQMGLRPDKGHVKSARVTGEVMGKLHPHGDAAIYDAMVRLAQPFALRLPLVDGHGNFGSL 124

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           D D  AA RYTEARM   A+ +   ++ED VDF   Y+ +  +P V P+ FPNLL NGT+
Sbjct: 125 D-DGPAAARYTEARMAPAAQALTADLEEDVVDFVPNYDNQFMQPSVLPAAFPNLLVNGTT 183

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT++  HN++E+      LI +PE +++ ++++I GPD PTGG IV     I +
Sbjct: 184 GIAVGMATNMAPHNLREVIAGTRHLIAHPEATLKDIMKFIPGPDLPTGGTIV-GLGGIRD 242

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG F+ RA+  +E+V      IVVTE+PY V   ++IEKI + + +K++  + D+
Sbjct: 243 AYETGRGTFKTRAKVSIEQVSPRKQGIVVTELPYMVGPEKVIEKIKDGVNSKKLTGISDV 302

Query: 302 RDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            D +   +   ++       +P+ ++ +++  + +E  F +N   L     PQ + L  +
Sbjct: 303 VDLTDRTNGLRLVIEIKNGFNPEAVLAALYKHTPLEDSFGINNVALVD-GQPQTLGLLDL 361

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           ++ ++ HR  V+ RR+ FR+     R+ +++GLL+A L+IDE+I IIR  D+    +  +
Sbjct: 362 MRVYIDHRLNVVRRRTEFRLGKRTDRLHLVEGLLVAILDIDEVIQIIRESDETAQAREKL 421

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              F LT+ Q + IL LRLR L K    ++++E D L  E  ++  +L+S       ++ 
Sbjct: 422 KVVFDLTDTQANHILELRLRQLTKYSRLELEAERDTLQQEIAELQRILSSDAALRELVSE 481

Query: 478 EIREVKEIFSKST----DLGRRRTTFCEVSRADKATLQ----QAMIEKEPITVVISNRGW 529
           E+ EV E +                  E   A     +       I  +P  V++S  G 
Sbjct: 482 ELAEVAERYGTDRRTQLKTKDDMQVAIEAVTAQSKAKKSLGLALEIADDPCWVLLSASGM 541

Query: 530 IRSLKSHSVD---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL------ 580
           +       +    +      + D     +       I  +++ G+   L   ++      
Sbjct: 542 MGRTPGKPIREALVDPGKRFKHDVFTSIVPTTARGEIGAVTSAGRMVRLSVMDIAVLDEN 601

Query: 581 --LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                         L+ L   + +V          L + ++ G    +     +  T   
Sbjct: 602 GGTPSMASAVKAAELVQLAKGEKLVALVPL--NTVLALATAGGVIKRLNPDYPLNQTE-- 657

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              +K+  ++++        D + +  V  + KLL F   ++    R G G+      DG
Sbjct: 658 WDIMKLKDDDEIVAAAPCPTDDMVLTFVTRDAKLLTFDAAKVRPQGRTGGGIAGIKLADG 717

Query: 696 GISDVICFK-ICEGLTWIDSAGRSYN----RSENDLLGWLGKRGGVGSLVPKGF 744
                +      +    +            +           R   G    +  
Sbjct: 718 DRLIALGVTAPGDAAEVVTVTNGKDGLASAKVTALSEYPQKGRATGGVRAHRFL 771


>gi|145589084|ref|YP_001155681.1| DNA topoisomerase IV subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047490|gb|ABP34117.1| DNA topoisomerase IV subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 793

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 287/781 (36%), Positives = 417/781 (53%), Gaps = 48/781 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
             +  L E+    ++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ +MSEMGL
Sbjct: 27  PKTIDLNEDGKDGLTLAVYAERAYLDYAISVVKGRALPDVADGQKPVQRRILFSMSEMGL 86

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
              A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD A
Sbjct: 87  RADAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQSFSLRYPLIDGQGNFGSRDGDGA 146

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T++A L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVG
Sbjct: 147 AAMRYTEARLTKIAGLLLSEIDEGTVDFAPNYDGSFQEPKLLPARLPFVLLNGASGIAVG 206

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN++E+  AA+AL+ +P++S  +LL  + GPD+P GG I+ S   I + Y  G
Sbjct: 207 MATEIPSHNLREVASAAIALMKSPKMSTAELLGIMPGPDYPGGGQIISSPAEIAQIYETG 266

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL--------- 297
           RG  +VRARW VEE+ RG W IVV E+P      R++++I E+   K             
Sbjct: 267 RGSIKVRARWSVEELARGQWQIVVNELPPSASSQRVLQEIEEITNPKVKVGKKTLTPEQN 326

Query: 298 ---------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                    L+ +RDES     VR+V  PK++++D +  +  +   + +E+  P+N+ ++
Sbjct: 327 NLKSTILNVLDGVRDESSKDAAVRLVFEPKSKNIDVNEFVNLLLAHTSLESNAPMNLVMI 386

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
                P+   L  IL EW+  R   + RR+ +R+  +  R+ IL+G LI  LNID++I I
Sbjct: 387 GNDGRPRQKGLKEILSEWVEFRVSTVTRRTQYRLGKVKDRMHILEGRLIVLLNIDKVIKI 446

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IRN D+PK  ++  F L++ Q + IL++RLR L +LE  +I+ EL  L  E++ ++ LL 
Sbjct: 447 IRNSDEPKSDLIKEFKLSDRQAEDILDIRLRQLARLEGIKIEQELKQLQTERDDLEGLLQ 506

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S      +I  EI    + F        RRT   E  RA      +  +  EP+TV++S 
Sbjct: 507 SDAVLRKRIIKEIESDLKDFGD-----DRRTLIQEDKRAVA----ETKVIDEPVTVIVSQ 557

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GW+R  + H  D +   FK GD+L       T D I    +DG+ YT+    L   RG 
Sbjct: 558 KGWVRVRQGHEHDATQFSFKAGDALYGTFEVRTIDVIQGFGSDGRVYTVQVSELPGARGD 617

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS- 645
           G  +   ++L     +V  +       +L+ +  G  F+   S++    + GK+F+ V  
Sbjct: 618 GSPLTSFVNLATGSQMVAYYAGQPDDLVLLSTKAGYGFLANVSDMSTRNKAGKSFISVDS 677

Query: 646 --SEEKMKLV--VKVTGDHVAVVGENRKLLIFSIDQIP--EMSRGKGVRLQSYKDGGISD 699
               +       VKV    VA + E  KLL+FS+D++       GKGV L    D     
Sbjct: 678 KVPGDAPLGAAKVKVGMKQVACLSEASKLLVFSLDELKRLPTG-GKGVILMGLDDKEFLA 736

Query: 700 VICFKICEGLTWIDSAGRSYNRSEND------LLGWLGKRGGVGSLV-PKGFPRSGKFLS 752
                  +G T   S      +          L  + G R   G  V P+   + GK  +
Sbjct: 737 SAIAVGSDGAT--YSGAGRAGKPTELSLDAKTLKSFAGNRARKGHFVEPRL--KDGKLKA 792

Query: 753 S 753
           S
Sbjct: 793 S 793


>gi|241662515|ref|YP_002980875.1| DNA topoisomerase IV subunit A [Ralstonia pickettii 12D]
 gi|240864542|gb|ACS62203.1| DNA topoisomerase IV, A subunit [Ralstonia pickettii 12D]
          Length = 780

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 274/772 (35%), Positives = 419/772 (54%), Gaps = 48/772 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPSEPAEALTLGAYAERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRSDAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  A +ALI + +++   L++Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVAAATVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------ 297
             GRG  +VRARW +EE+ RG W +VV E+P      +++E+I EL   K          
Sbjct: 241 ESGRGSLKVRARWKIEELARGQWQLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSP 300

Query: 298 ------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
                       L+ +RDES     VR+V  PK++++D      ++   + +E+   +N+
Sbjct: 301 DQLTMKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R   + RR+  R+  ++ R+ IL+G  +  L I+++
Sbjct: 361 VMIGTDGRPRQKGLAEILREWITYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRIEDV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  ++PK  ++  F+L++ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D 
Sbjct: 421 IRIIRESEEPKAALIQVFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + +        RRT   E  RA      +  I  EP+TV+
Sbjct: 481 LLKSETMMRRRIIKEIETDAKQYGD-----DRRTLIQEERRAAA----EVKIVDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD-----GKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I   F   +   L++ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTFAGHAEQNLVISTRGGNGFLAKVGDMVGRQKAG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++      V  D   VA + E  +LL+F I ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPAPVPADAYGVACLSEGGRLLLFQISELKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNR------SENDLLGWLGKRGGVGSLV 740
             +   + F        +   G    +      +      + GKR   G  +
Sbjct: 712 EALLQAVAFGAA--GFVLSGTGPRGGKAVEQTMTTRAQEPYAGKRARKGKTL 761


>gi|9230567|gb|AAF85904.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 214/748 (28%), Positives = 391/748 (52%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R           + +   N++I+  
Sbjct: 534 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D       V+  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 594 EVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D+V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 654 DYVVLVSQNGYALRFNIEKVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIEEILATSRAKRGLQVLRELK 739


>gi|73916850|gb|AAZ93293.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 213/747 (28%), Positives = 388/747 (51%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+ EIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|306833367|ref|ZP_07466494.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus bovis ATCC
           700338]
 gi|304424137|gb|EFM27276.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus bovis ATCC
           700338]
          Length = 819

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 211/747 (28%), Positives = 379/747 (50%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  +D+D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + LID+P   ++KL+ ++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMAFLPGPDFPTGA-IIQGKDGIRKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +  
Sbjct: 241 RTDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR+E++  
Sbjct: 301 ELKKDADEQTVLNYLLKYTDLQVNYNFNMVAID-NYTPRQVGIIPMLTSYIAHRKEIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +D++IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKVSYEFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L      + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDERTMYNVMKRELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R T  +           ++I +E   V ++  G+I+     S +   +  +  ++ 
Sbjct: 478 ----RLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRTSPRSYNASTVEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ +  G     P   L   R           + +   ++ ++ A
Sbjct: 534 DELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRWKDIGEHLSQTITNFATDEYVLYA 593

Query: 606 FVYDS--TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
            + D   +      +  G     E  E         K   + K+ + ++ +  +  +  D
Sbjct: 594 EIVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKNADDSVVTISPIALD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   L F+I+++P +  +  GV+  + KD            +    +    R 
Sbjct: 654 DVMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKDDDFVASAFVANTDSFFIL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +     L     R   G  V +   
Sbjct: 712 SLKRMATELIPATSRANRGLQVLRELK 738


>gi|118602336|ref|YP_903551.1| DNA topoisomerase IV subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567275|gb|ABL02080.1| DNA topoisomerase IV subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 745

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 271/746 (36%), Positives = 441/746 (59%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + +++  S+    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 1   MNQISLEQQSVAEFSERAYLDYSMYVILDRALPFIGDGLKPVQRRIVYAMSELGLKSTAR 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP I GQGN+G  D   S AA R
Sbjct: 61  FKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFIDGQGNWGAPDDPKSFAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+++++ ++L+L  +++  V++ D ++    EP   P++ PNLL NGTSGIAVGM T+
Sbjct: 121 YTESKLSRYSDLLLSEINQGTVNWVDNFDGSLQEPKNLPAQVPNLLLNGTSGIAVGMTTN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +P HN+ E+  A +AL+D P + ++ +++ I  PD+PT   IV S   + + Y  G G  
Sbjct: 181 VPPHNLTEVVSACIALLDKPSMDLDGIMQIIRAPDYPTDADIVSSPADLRQIYETGHGSV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           ++RA +  E+       IV+  +P+Q   +++I +IA  I AK++PL++DIRDES  +  
Sbjct: 241 KMRAIYQKEKGN-----IVIEALPFQTSGAKVIIQIAAQIRAKKLPLVDDIRDESDHENP 295

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+ P++  +D D+LM  +F  +++E  + +NMNV+ +   P V+ L  +LKEWL++R
Sbjct: 296 TRIVIIPRSNRVDVDVLMLHLFATTELEKSYRVNMNVIGLNGKPGVLSLIPMLKEWLSYR 355

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            +V+  R ++R+  I  R+ ILKGLLIA+LNIDE+IAIIR  DKPK V++  F L++ QV
Sbjct: 356 MKVVINRLTYRLDKILVRLHILKGLLIAFLNIDEVIAIIREHDKPKLVLIDHFKLSDIQV 415

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I++E  +L  EKEK+  LL+S  +    I  E++ + + F  
Sbjct: 416 EAILELKLRYLAKLEEIKIQAEQQDLALEKEKLKLLLSSDLRLKILIKKELKAIIKDFGD 475

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+         +A  +  +   E ITVV+S +GW+RS K +S+D + L++K G
Sbjct: 476 E-----RRSNIKRNVNTAQAFSEDDLAPAENITVVLSEKGWVRSAKGYSIDPNTLNYKAG 530

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS   ++   +   ++ + + G++Y+L A +L S RG GE +   +        V   + 
Sbjct: 531 DSYLTSVKGKSNKPVIFIDSTGRSYSLLANSLSSARGQGEPLTGKLSPPSEARFVDVIMG 590

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGDHVAVVG 665
            ++  +L+ S+ G  FI    +++++ + GK F  +S      ++  V  +    +A+V 
Sbjct: 591 KASQNILLASNIGYGFIATIGDLLSSRQAGKAFFSLSKGAQMMRIINVDDLDNQFIALVT 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI------SDVICFKICEGLTWIDSAGRSY 719
              +LLIF I ++P +S+GKG +L       +         IC  +      + +  R +
Sbjct: 651 NRGRLLIFPISELPILSKGKGSKLIQISTKDVKSRQEFVMNICILLETQHLKVIAGKRHF 710

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
                DL  ++  R   G L+PKG+ 
Sbjct: 711 TIKFQDLSNYISSRARCGKLLPKGYQ 736


>gi|91782491|ref|YP_557697.1| DNA topoisomerase IV subunit A [Burkholderia xenovorans LB400]
 gi|91686445|gb|ABE29645.1| DNA topoisomerase IV subunit A [Burkholderia xenovorans LB400]
          Length = 774

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 279/769 (36%), Positives = 422/769 (54%), Gaps = 43/769 (5%)

Query: 1   MGVDNISN---SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  DN  +        E +   ++L    E  YL YA+S +K RA+PD+ DG KPV RRI
Sbjct: 1   MDDDNTLDLFTEPPPPEGDF--LTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRI 58

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + AM++MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGN
Sbjct: 59  LFAMNDMGLSDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGN 118

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+ DGD AAA RYTEAR+T +A+L+L  +++  VDF   Y+ E  EP + P++ P +L 
Sbjct: 119 FGSRDGDGAAAMRYTEARLTPIAKLLLDEINQGTVDFMKNYDGEFDEPRLLPARLPFVLL 178

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG SGIAVG+AT IPSHN++E+  AA+A+I NP++   +L++YI GPDFP GG I+ S  
Sbjct: 179 NGASGIAVGLATEIPSHNLREVAAAAVAMIRNPKLQHAELMQYIPGPDFPGGGQIISSEA 238

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I  +Y  GRG  +VRARW +EE+ RG W +V+TE+P      +++E+I E    K    
Sbjct: 239 EISAAYESGRGSLKVRARWKIEELARGQWQLVITELPPSTAAQKVLEEIEEQTNPKIKLG 298

Query: 298 LEDIRDE--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            + +  E                        VR+V  PK+  +D    + ++   + +E+
Sbjct: 299 KKTLTPEQLQTKQTMLALLDAVRDESGKDAPVRLVFEPKSSRIDQTDFVNTLLAHTSLES 358

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
              LN+ ++     P+   L  IL EW+A R   + RR+  R+  +D R+ IL+G +I +
Sbjct: 359 NASLNLVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVF 418

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
           LNIDE+I IIR  D+PK  +++ F L++ Q + IL +RLR L +LE+ +I+ EL  L  E
Sbjct: 419 LNIDEVIRIIRESDEPKVALMAAFGLSDRQAEDILEIRLRQLARLEKIKIEKELAELKDE 478

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           K +++ LL S       +  EI    + +        RRT   +  RA      +A +  
Sbjct: 479 KARLEELLGSESAMKRLLIKEIEGDAKQYGDE-----RRTLIQQEKRATF----EARVVD 529

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           EP+TVV+S +GW+R+LK H +D +   FK GD L  A    T D ++   ++G+ Y++  
Sbjct: 530 EPVTVVVSQKGWVRALKGHGLDAAGFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAV 589

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
             L  GRG G  +  LI+L     ++  +   +   LL+ SS G  FI    ++++  + 
Sbjct: 590 AMLPGGRGDGVPVTSLIELESGSHLMHYYAASADQALLLASSNGFGFIARVGDMVSRVKA 649

Query: 638 GKTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           GK+F+ + +  +    + +  D  H+A +  N +LL+F +D++  +   G+GV L +  D
Sbjct: 650 GKSFMTIDAGAQPLAPMPMLPDATHIACLSSNGRLLVFGLDEMKTLSGGGRGVTLMAL-D 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSEN-----DLLGWLGKRGGVGS 738
              + V    I      +    R     E       L   +GKR   G 
Sbjct: 709 EKETLVQALSINNAGVVLIGTRRGGRVDEEKVSGAALAPHIGKRARKGR 757


>gi|23099149|ref|NP_692615.1| DNA topoisomerase IV subunit A [Oceanobacillus iheyensis HTE831]
 gi|22777377|dbj|BAC13650.1| DNA topoisomerase IV subunit A [Oceanobacillus iheyensis HTE831]
          Length = 816

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 215/747 (28%), Positives = 372/747 (49%), Gaps = 24/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM          F+K
Sbjct: 5   EKYLDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHMERNTHDKHFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD++VRL+Q +  R  LI   GN G+IDGD  AA RYTEA
Sbjct: 65  SAKTVGTVIGNYHPHGDSSVYDAMVRLSQDWKVRNGLIEMHGNNGSIDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ ++  +L+ +D+  VD+   ++E   EPVV P+KFPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSSISAELLRDIDKQTVDYIPNFDETTDEPVVLPAKFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +A +  ID PE SI+ L++ + GPDFPTGG I++  E I ++Y  GRG   VR 
Sbjct: 185 NLEEVMDAVILKIDKPEASIDDLMKLMKGPDFPTGG-IIQGVEGIRKAYETGRGKIIVRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +  G   IVVTE+P++V K+ +++K+ EL I +++  + ++RDE+      V+ 
Sbjct: 244 KAVVETMKGGREQIVVTEVPFEVNKATMVKKMDELRIDRKVEGIAEVRDETDRTGLRVVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + + ++  ++  +D++  +  NM  +      +++ L  +L  ++AH++EV+ R
Sbjct: 304 ELKKDANSEGVLNYLYKNTDLQITYHFNMVAIQDKTP-KLLSLPSLLDAYIAHQKEVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           + ++ +   + R  I++GL+ A   +DE+IA IR        K  + +++  TE Q +AI
Sbjct: 363 QITYDLNKANARAHIVEGLIKAISILDELIATIRASKDKGDAKAQIKAKYGFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E   L  + ++ +S+L+S K+ +  I  E+R++K+ F+    
Sbjct: 423 VMLQLYRLTNTDIVELEKEAAELKEKIKEYESILSSDKKLFQTIKKELRQIKKKFADP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +     +  +  E + V ++  G+++     S   S          
Sbjct: 481 ----RRTVIEEKIEELKINIEVTVASEDVLVSVTRDGYLKRTSLRSYAASNEEELPVKDD 536

Query: 552 KIAL---HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
              +     +TTD +LL +  GK    P   L   R       I  ++ L+  + ++   
Sbjct: 537 DYPISLLEVNTTDNLLLFTNKGKYILCPVHELPDIRWKDMGQHISNIVPLDKEEYLIQCM 596

Query: 607 VYDS----TCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD-H 660
                      L+  +  G     E     A  R K    L +  ++++  V    G+  
Sbjct: 597 PVRDFKSAEGYLIFFTKNGMVKRSEFQLYDAQRRSKALIALNLKGDDEVVHVSHTNGNMD 656

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
           V +       L +   +I  +  R  GV+  S KD   + +   F      +      R 
Sbjct: 657 VFIATYKGYGLWYHESEISVVGQRAAGVKSVSLKDDDEVVNGQVFDDLSEPSLALITQRG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G ++ +   
Sbjct: 717 SCKRMKLKDFEKTTRAKRGVIMLRELK 743


>gi|171463637|ref|YP_001797750.1| DNA topoisomerase IV, A subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193175|gb|ACB44136.1| DNA topoisomerase IV, A subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 791

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 284/783 (36%), Positives = 418/783 (53%), Gaps = 44/783 (5%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
             ++      L E+   +++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ +M
Sbjct: 20  SGNHDPKPIDLNEDGKDSLTLAVYAERAYLDYAISVVKGRALPDVSDGQKPVQRRILFSM 79

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SEMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 80  SEMGLRADAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQSFSLRYPLIDGQGNFGSR 139

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T++A L+L  +DE  VDF   Y+    EP + P++ P +L NG S
Sbjct: 140 DGDGAAAMRYTEARLTKIAGLLLSEIDEGTVDFAPNYDGSFQEPKLLPARLPFVLLNGAS 199

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IPSHN++E+  AA+AL+ +P++S  +LLE + GPD+P GG I+ S   I +
Sbjct: 200 GIAVGMATEIPSHNLREVALAAVALMKSPKMSTSELLEIMPGPDYPGGGQIISSAAEIAQ 259

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---- 297
            Y  GRG  +VRARW +EE+ RG W IVV E+P      R++++I E+   K        
Sbjct: 260 IYETGRGSIKVRARWSIEELARGQWQIVVNELPPATSSQRVLQEIEEITNPKVKVGKKTL 319

Query: 298 --------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                         L+ +RDES     VR+V  PK++++D +  +  +   + +E+  P+
Sbjct: 320 TLEQNNLKSTILNVLDGVRDESSKDAAVRLVFEPKSKNIDVNEFVNLLLAHTSLESNAPM 379

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P+   L  IL EW+  R   + RR+  R+  +  R+ IL+G L   LNID
Sbjct: 380 NLVMIGNDDRPRQKGLKEILSEWIVFRVTTVTRRTQHRLDKVKNRMHILEGRLTVLLNID 439

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           ++I IIRN D+PK  ++  F L++ Q + IL++RLR L +LE  +I+ EL  L  E++ +
Sbjct: 440 KVIKIIRNSDEPKADLIKEFKLSDRQAEDILDIRLRQLARLEGIKIEQELKELKTERDDL 499

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL S      +I  EI    + F        RRT   E  RA      +  +  EP+T
Sbjct: 500 EGLLQSDTALRKRIIKEIESDMKDFGD-----DRRTLIQEDKRAVA----ETKVIDEPVT 550

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V++S +GW+R  + H  D +   FK GD+L       T D I    +DG+ YT+P   L 
Sbjct: 551 VIVSQKGWVRVRQGHEHDPTQFSFKAGDALYATFEVRTVDVIQGFGSDGRVYTVPVSELP 610

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             RG G  +   ++L     +V  +   S   +L+ +  G  F+   +++    + GK+F
Sbjct: 611 GARGDGSPLTSFVNLASGSQMVAYYAGQSDDLVLLSTKAGFGFLANVADMTTRNKAGKSF 670

Query: 642 L----KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP--EMSRGKGVRLQSYKD 694
           L    KV  +  +       G   VA + E  KLL+F +D++       GKGV L    D
Sbjct: 671 LSMDAKVPGDAPLGAAKVRVGMKQVACLSEASKLLVFPLDELKRLPTG-GKGVILMGLDD 729

Query: 695 GGISDVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLV-PKGFPRSGK 749
                       +G T+  +               L  + G R   G  V P+   + GK
Sbjct: 730 NEFLASAIAVGPDGATYSGAGRAGKPTELGLDAKTLKSFAGNRARKGHFVEPRL--KDGK 787

Query: 750 FLS 752
             +
Sbjct: 788 LTA 790


>gi|116872720|ref|YP_849501.1| DNA topoisomerase IV subunit A [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741598|emb|CAK20722.1| DNA topoisomerase IV, A subunit [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 819

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 205/765 (26%), Positives = 386/765 (50%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E +++ + GPDFPTGGII    + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPLSTTEDIMKIVKGPDFPTGGIIQG-IDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRIVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +     V    + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNF-NMVAIHNKRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + + + 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE   L  +   ++ +L    +    +  E+ ++
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKELADQISVLEKILGDESELIAVLKSELADI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ +         R T  +   ++     + ++  E + V ++  G+++     S    +
Sbjct: 475 KKKYKTP------RRTEVQAEISEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDL 596
            + L  KE D        ++ D +LL ++ G     P   L   R          L  DL
Sbjct: 529 GAELAMKEADHAIFIKKMNSLDTLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+   +++  
Sbjct: 589 SAGEEIRSAIAIQTFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKDNDELLS 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGL 709
           V  + G + + +   N   L + I +IPE   R  GV+  + K    +   +     +  
Sbjct: 649 VNLIDGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLKQDDIVIGGVILAPNDTK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   ++   +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KNNPHRFIG 752


>gi|322372519|ref|ZP_08047055.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C150]
 gi|321277561|gb|EFX54630.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C150]
          Length = 818

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 205/747 (27%), Positives = 383/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  
Sbjct: 301 ELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNF-TPRQVGLQKILSSYIAHRRDIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKDKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E  +L  +   + +++   +  +N +  E+R++K+ F     
Sbjct: 420 VTLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGDERTMFNVMKRELRDIKKKFGND-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V I+  G+++     S +   +  +  ++ 
Sbjct: 478 ----RRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASTIDEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L +   A TT  +L+ +        P   L   R           + +L+ +++++ A
Sbjct: 534 DDLILVQQAKTTQHLLMFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNLSKDEEVLYA 593

Query: 606 FVYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
            + D       L  +  G     E  E         K   + K+    + +  V  +  D
Sbjct: 594 EILDDFEAGTYLAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKDASDCIVTVTPIQLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++ +    L F+ D++P +  +  GV+  + KD      +     +    +    R+
Sbjct: 654 DVMIITQKGYALRFNADEVPVVGAKATGVKAINLKDDDTVQAVFVANTQSFYLL--TQRA 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +          KR G G  V +   
Sbjct: 712 SLKRVATADIPQAKRAGRGLQVLRELK 738


>gi|126652426|ref|ZP_01724599.1| DNA topoisomerase IV subunit A [Bacillus sp. B14905]
 gi|126590847|gb|EAZ84961.1| DNA topoisomerase IV subunit A [Bacillus sp. B14905]
          Length = 812

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 217/744 (29%), Positives = 379/744 (50%), Gaps = 26/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   EKFQDLPLEEVMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMFTEGNTHEKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R+ LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKARHMLIEMHGNNGSVDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ + +  V+F   ++++D EP V P++FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSAIAGEMLRDIGKKTVEFVPNFDDQDMEPTVLPARFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ +A L  +D P  ++++L+  + GPDFPTGG I++  + I ++Y  GRG   VRA
Sbjct: 185 ALDEVLDAVLMRLDKPTATVDELMTVLKGPDFPTGG-IIQGVDGIKKAYETGRGKIIVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +  G   IVVTE+PY V K+ L++KI E  + KR+  + +IRDES      V+ 
Sbjct: 244 QAVVEPIKGGKEQIVVTELPYDVNKANLVKKIDEQRVDKRLEGIAEIRDESDRTGLRVVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + +    +++ +F  +D++  +     +    R P +M L  +L  ++ H++EV+  
Sbjct: 304 ELKKDVPGQGILQYLFKTTDLQVAYNF-NMIAIHNRRPTMMTLPLLLDAYITHQKEVVTN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAI 431
           RS + +Q    R  I+ GL+ A   +DE+IA IR+ +  K     + ++F  TE Q +AI
Sbjct: 363 RSIYDLQKAKDRSHIVDGLIKALSILDEVIATIRSSNDKKDAKLNLQAKFDFTEVQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +  +++ E D+L     K++ +L S  +    I  E+ ++K+ F++   
Sbjct: 423 VSLQLYRLTNTDITELRQEQDDLNKLIAKLEGILQSEAKLVRVIKQELLDIKKRFTEP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R +  E    +       ++  E + V ++  G+I+   + S    +      K+ 
Sbjct: 481 ----RRSRIEQEIEEIKITLDVLVPSEEVVVTVTKDGYIKRTSTRSHAASNGQDFAMKDS 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAF 606
           D L    + +T   +LL +  G     P   L   R     + I  ++  + ++ I+  +
Sbjct: 537 DYLLYEANLNTQHHLLLFTNRGNYIYQPVHELPDIRWKDLGQHISSIVPTSEDESIIAVY 596

Query: 607 VYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD- 659
            ++        +L  +  G       ++  A TR  K    + V + + M     +T D 
Sbjct: 597 GFETFEQPNTYILTATKDGQIKRSPLADY-AVTRYSKPIKTMNVKAGDAMIYASFMTDDV 655

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGR 717
            + +  +    + F I+++P    +  GV+  + KDG  +  V   +  E    +    R
Sbjct: 656 ELLLTTDTAYAIRFPIEELPVTGVKTGGVKGITLKDGEALVGVNVLQPDETQYVVIVTQR 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVP 741
              +  N     +  R   G  V 
Sbjct: 716 GAVKKMNVAEVEVAGRAKRGLKVL 739


>gi|228478260|ref|ZP_04062868.1| DNA topoisomerase IV, A subunit [Streptococcus salivarius SK126]
 gi|228249939|gb|EEK09209.1| DNA topoisomerase IV, A subunit [Streptococcus salivarius SK126]
          Length = 818

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 205/747 (27%), Positives = 384/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D + V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIDNNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  
Sbjct: 301 ELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNF-TPRQVGLQKILSSYIAHRRDIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E  +L  +   + +++   +  +N +  E+R++K+ F     
Sbjct: 420 VTLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGDERTMFNVMKRELRDIKKKFGND-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V I+  G+++     S +   +  +  ++ 
Sbjct: 478 ----RRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASTIDEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L +   A TT  +L+ +        P   L   R           + +L+ +++++ A
Sbjct: 534 DDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNLSKDEEVLYA 593

Query: 606 FVYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
            + D   T   L  +  G     E  E         K   + K+  + + +  V  +  D
Sbjct: 594 EILDDFETGTYLAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKDDSDFIVTVTPIQLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + ++ +    L F+ D++P +  +  GV+  + KD      +     +    +    R+
Sbjct: 654 DIMIITQKGYALRFNADEVPVVGAKAAGVKTINLKDDDTVQAVFVANTQSFYLL--TQRA 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +          KR G G  V +   
Sbjct: 712 SLKRVATADIPQAKRAGRGLQVLRELK 738


>gi|17545697|ref|NP_519099.1| DNA topoisomerase IV subunit A [Ralstonia solanacearum GMI1000]
 gi|17427991|emb|CAD14680.1| probable dna topoisomerase iv (subunit a) protein [Ralstonia
           solanacearum GMI1000]
          Length = 781

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 273/771 (35%), Positives = 416/771 (53%), Gaps = 49/771 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPREPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPRLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  AA+ALI + +++   L++Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVATAAVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQIY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL   K     + +  
Sbjct: 241 ETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRAGKKSLTP 300

Query: 304 E--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           E                        VR+V  PK++++       ++   + +E+   +N+
Sbjct: 301 EQLQLKQTLLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R   + RR+  R+  ++ R+ IL+G  +  LNIDE+
Sbjct: 361 VMIGTDGRPRQKGLREILREWIDYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLNIDEV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  D+PKP ++  F L+E Q + IL +RLR L +LE  +I+ EL +L  E+ ++D 
Sbjct: 421 IRIIRESDEPKPALMQAFGLSERQAEDILEIRLRQLARLEAIKIEQELKDLREEQAELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + F        RRT   E  RA      +  +  EP+TV+
Sbjct: 481 LLKSETMMRRRIVKEIETDAKQFGD-----DRRTLIQEERRAAA----EVKVVDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD-----GKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I       +   +L+ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTLASHAEQNVLISTQGGNGFLAKVGDMVGRQKGG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGDHV--AVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++      V  D    A +  N +LL+F + ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPAAVPEDAYGAACLSANGRLLLFPLAEVKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNR-------SENDLLGWLGKRGGVGS 738
             ++  + F        +  AG    +       +      + GKR   G 
Sbjct: 712 ETLAQALAFGPA--GFVVSGAGPRSGKATEQTFTTTRAQEPYAGKRARKGR 760


>gi|289434571|ref|YP_003464443.1| DNA topoisomerase IV, A subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289170815|emb|CBH27357.1| DNA topoisomerase IV, A subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 819

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 205/765 (26%), Positives = 387/765 (50%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTSEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E++++ + GPDFPTGGII    + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQG-IDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +     V    + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNF-NMVAIHNKRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS   ++    R  IL+GL+ A   +DE+I +IR     +     + + + 
Sbjct: 355 EHQKEIITKRSEHDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELVAVLKAELSEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ +         R T  +    +     + ++  E + V ++  G+++     S    +
Sbjct: 475 KKKYKTP------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDL 596
              L  KE D        ++ + +LL ++ G     P   L   R          L  DL
Sbjct: 529 GKELAMKEADHAIFIKKMNSLETLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +      +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSVIDIQTFTEEKRFLFVTKNGMTKQSLITNYKPQRYSKSMMGIKLKDDDELLS 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGL 709
           V  + G + + +  +N   L + I +IPE   R  GV+  + K D  +   +     +  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYPIAEIPESGARTAGVKAINLKQDDTVIGGVVLTPNDNR 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   ++   +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KNNPHRFIG 752


>gi|291615237|ref|YP_003525394.1| DNA topoisomerase IV, A subunit [Sideroxydans lithotrophicus ES-1]
 gi|291585349|gb|ADE13007.1| DNA topoisomerase IV, A subunit [Sideroxydans lithotrophicus ES-1]
          Length = 790

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 273/746 (36%), Positives = 414/746 (55%), Gaps = 35/746 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V +    E  YL YA+S +K RA+P++ DG KPV RRI++AM +MGL  G    KSAR+
Sbjct: 42  EVKIAEYAERAYLEYAVSVVKGRALPEVCDGQKPVQRRILYAMRQMGLTHGNKHVKSARV 101

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD S Y+++VRLAQ F  RYPL+ GQGNFG+ DGD+AAA RYTEAR+T 
Sbjct: 102 VGDVLGKYHPHGDSSAYEAMVRLAQDFAMRYPLVDGQGNFGSRDGDNAAAMRYTEARLTP 161

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+L+L  +D   VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++E
Sbjct: 162 IADLLLSELDMGTVDFIPNYDGAFQEPAMLPARLPMVLLNGASGIAVGMATEIPSHNLKE 221

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +AA+AL  NP +  +KLL YI GPDFP GG I+ S   I ++Y  GRG  ++RARW +
Sbjct: 222 VAKAAVALAKNPNVKDDKLLSYISGPDFPGGGQIISSAADIRDAYASGRGSLKMRARWSI 281

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI------------------PLLED 300
           E++ RG W +VV+E P+ V   +++E+I EL   K                     +L+ 
Sbjct: 282 EQLARGQWQVVVSEFPHGVSAQKVLEEIDELTNPKVKANKKSLTPEQTQNKQLILSVLDA 341

Query: 301 IRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           + DES   +  R+V  PK+    PD +M  +   + ++    +N+ ++ +   PQ   L 
Sbjct: 342 VADESDKSQKTRLVFQPKSSKQSPDDMMAVLLTHTSLQNSVSVNLTMIGLDGRPQQKALT 401

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            +L+EW+  R   + RR  +R+  ++ R+ IL G +I YLNIDE+I +IRN D PK  ++
Sbjct: 402 QVLREWVEFRLRTVTRRCDYRLGQVNDRLHILAGRMIVYLNIDEVIKVIRNSDAPKEDLM 461

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            +F L+E Q + IL +RLR L +LE  +I+ E+  L AE +++  +L S +     +  E
Sbjct: 462 KKFDLSERQAEDILEIRLRQLARLEGIKIEREIKELKAEAKELKRVLGSEEALRELVVGE 521

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           I    + +        RRT   E       T   A +  EP+TV IS R W+R+   H +
Sbjct: 522 IEADAKQYGDE-----RRTLIEEAQ----ITKVTAQVSDEPVTVFISQRFWVRTRLGHGI 572

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D SA+ FK+GDS+       TTD+ +++ ++G+  ++P   L +GRG G  +   I+L  
Sbjct: 573 DASAIAFKDGDSIAATYECRTTDQCIVICSNGRVCSIPVSALPTGRGDGAPLATFIELAP 632

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
              I  AF   +   +L+ +S G  F     +++   + GK F+ V  E  +  V+    
Sbjct: 633 GAKIAHAFCGKTETPVLISTSAGYGFPCFIGDMVGRNKAGKQFISVKEETILPPVLLAPT 692

Query: 659 DH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTW---I 712
            H  VA + +N +LL+F + ++  +   GKG+ L   K+G             LT    +
Sbjct: 693 QHSLVAALSKNARLLVFVLSELKLLQGGGKGMMLIDLKEGDELTACTVINTPELTLGGTV 752

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGS 738
            S  +       +L  + G R   G 
Sbjct: 753 GSKVQQLKIGGKELQTYFGARAKAGK 778


>gi|323351526|ref|ZP_08087180.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           VMC66]
 gi|322122012|gb|EFX93738.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           VMC66]
          Length = 810

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 209/751 (27%), Positives = 385/751 (51%), Gaps = 27/751 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ V
Sbjct: 1   MSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++
Sbjct: 61  GNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEM 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+ E+
Sbjct: 121 AGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R  +E
Sbjct: 181 IDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSRTEIE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           ++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     + 
Sbjct: 240 KLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  RS F 
Sbjct: 300 ANTELILNYLFKYTDLQVNYNFNMVAIDNF-TPRLVGIVPILTSYIAHRKEIILARSRFD 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRL 436
               ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ L+L
Sbjct: 359 KAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQL 418

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F         R
Sbjct: 419 YRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP------R 472

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553
            +  + +         ++I +E   V ++  G+I+     S     L  +  ++ D L  
Sbjct: 473 LSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDDRLIF 532

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV--TAFVY 608
              A TT  +L+ ++ G     P   L   R           + + +  ++++       
Sbjct: 533 VSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDS 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDHVAVV 664
                    +  G    VE  E         K   F K+   ++++  +  +  D V +V
Sbjct: 593 FEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDDVMLV 652

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
            +N   L F+I+++P +  +  GV+  + K   +         + L  +    R   +  
Sbjct: 653 TKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLL--TQRGSLKRM 710

Query: 724 NDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
                 +  R   G  V +    +  +  S+
Sbjct: 711 AVADIPVTSRANRGLQVLRELKTKPHRVFSA 741


>gi|134296545|ref|YP_001120280.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
 gi|134139702|gb|ABO55445.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
          Length = 773

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 283/747 (37%), Positives = 424/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 SKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRA+W +E
Sbjct: 200 AAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDAEISAAYETGRGSLKVRAKWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------------------AKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLLT 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+ +R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILDEWVKYRQSTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKSALMS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q + IL +RLR L +LE+ +I+ ELD L  EK K++ LL +       +  EI
Sbjct: 440 AFGLTERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 EADAKQYGD-----DRRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PAGFSFKAGDGLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  +      +LL+ SS G  F+ +  ++++  + GK+F+ + +       + V   
Sbjct: 611 SHLMHYYAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKSFMTIDAGAVPLAPMPVLPN 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F++D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ATQVACLSSGGRLLVFAMDEMKTLSGGGRGVTLMAL-DDKETLVQALAIDPAGVVLIGTG 729

Query: 717 RSYNRSENDLLG-----WLGKRGGVGS 738
           R     +  L        +GKR   G 
Sbjct: 730 RGGKVQDETLSYAGLAPHIGKRARKGR 756


>gi|288905179|ref|YP_003430401.1| DNA topoisomerase IV subunit A [Streptococcus gallolyticus UCN34]
 gi|288731905|emb|CBI13470.1| DNA topoisomerase IV subunit A [Streptococcus gallolyticus UCN34]
          Length = 819

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 213/747 (28%), Positives = 380/747 (50%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  +D+D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + LID+P   ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGA-IIQGKDGIRKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +  
Sbjct: 241 RTDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR+E++  
Sbjct: 301 ELKKDADEQTVLNYLLKYTDLQVNYNFNMVAID-NYTPRQVGIVPMLTSYIAHRKEIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +D++IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKVSYEFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L      + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDERTMYNVMKRELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R T  +           ++I +E   V ++  G+I+     S +   +  +  ++ 
Sbjct: 478 ----RLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRTSPRSYNASTVEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ +  G     P   L   R           + +   ++ I+ A
Sbjct: 534 DELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRWKDIGEHLSQTITNFATDEYILYA 593

Query: 606 FVYDS--TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
            + D   +      +  G     E  E         K   + K+ + ++ +  +  +  D
Sbjct: 594 EIVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKNADDSVVTISPIALD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   L F+I+++P +  +  GV+  + KD            +    +    R 
Sbjct: 654 DVMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKDNDFVASAFVANTDSFFIL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +     L     R   G  V +   
Sbjct: 712 SLKRMATELIPATSRANRGLQVLRELK 738


>gi|322389471|ref|ZP_08063023.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           parasanguinis ATCC 903]
 gi|321143849|gb|EFX39275.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           parasanguinis ATCC 903]
          Length = 817

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 210/747 (28%), Positives = 384/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + DL++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRR+++  
Sbjct: 301 ELKKDANADLILNYLFKYTDLQVNYNFNMVAID-NYTPRQVGIVPILSSYIAHRRDIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  +RR+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAERRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E  +L  +   + +++   +  +N +  E+REVK++F     
Sbjct: 420 VTLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGDERTMFNLMKKELREVKKLFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S +   L  +  ++ 
Sbjct: 478 ----RRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTSPRSFNASTLEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT  +LL +  G A   P   L   +       L   L + +        
Sbjct: 534 DELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKWKDIGEHLSQTLTNFEQEEEILFA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSEEK-MKLVVKVTGD 659
           +             + +G     E  E+        K   + K+  ++  +  V  V  +
Sbjct: 594 EIVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKLKDQDDCIVAVAPVVLE 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + ++ +N   L F+I+++P +  +  GV+  + KDG             +  +    R 
Sbjct: 654 DIMIITKNGYGLRFNIEEVPVVGAKAAGVKAINLKDGDQVSAAFKSTTPSMYIL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +        +  R   G  V +   
Sbjct: 712 SLKRMLQDDIPVTSRAKRGLQVLRELK 738


>gi|228909406|ref|ZP_04073231.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 200]
 gi|228940681|ref|ZP_04103244.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973599|ref|ZP_04134181.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980157|ref|ZP_04140471.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis Bt407]
 gi|228779515|gb|EEM27768.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis Bt407]
 gi|228786060|gb|EEM34057.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818925|gb|EEM64987.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228850183|gb|EEM95012.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 200]
 gi|326941315|gb|AEA17211.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 807

 Score =  559 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 216/751 (28%), Positives = 384/751 (51%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ S+L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKILELQSILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL ++ G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|323464524|gb|ADX76677.1| DNA topoisomerase IV, A subunit [Staphylococcus pseudintermedius
           ED99]
          Length = 803

 Score =  559 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 220/759 (28%), Positives = 402/759 (52%), Gaps = 27/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M   G  +   F
Sbjct: 1   MAEIIQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E IL+ +++D VDF   Y++ + EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A L  IDNP++++++L++YI GPDFPTGG IV+  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGG-IVQGIDGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+VTEIPY+V KS L++KI EL   K++  + ++RDE       V
Sbjct: 240 RAKADIETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDEMDRSGLRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++   ++  ++  +D++  +     V      P++M +  I+  +L H+ EV+
Sbjct: 300 AVELKKDVNATSILNFLYKNTDLQVAYNF-NMVAITEGRPKLMGIKPIISSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+SF ++  + R+ I++GL+ A   +DE+IA+IRN       K  +V  +  TE Q +
Sbjct: 359 TRRTSFDLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E D L  +   +  +L +     + I  E+ E+K+ F + 
Sbjct: 419 AIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ ++  E + + ++  G+I+     S        +  K
Sbjct: 479 ------RLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV- 603
           E D +   +  +T D  ++ +  G+   +P   L   +     + +  ++ +  ++ +V 
Sbjct: 533 ERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVD 592

Query: 604 --TAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTGD- 659
             T   ++    ++  + +G       S   +  T K    +KV   + +  V+ V  D 
Sbjct: 593 CYTVSEFNDERAIITATRQGMIKKSLLSGFKSTRTTKPLVAMKVKESDALISVMLVPADA 652

Query: 660 ---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++      L + + ++P+   R  G++  + KD     V+   I    T + + 
Sbjct: 653 SSQLITLLTHRGMSLTYPMSELPDTGLRATGIKAINLKDEDHV-VLADHIQTEDTILIAT 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPR-SGKFLSS 753
            R   +  +  +    KR   G  + K   +   + +++
Sbjct: 712 QRGALKRISFKVLQQAKRAQRGITLLKELKKQPHRVVAA 750


>gi|255326306|ref|ZP_05367392.1| DNA gyrase subunit A [Rothia mucilaginosa ATCC 25296]
 gi|255296760|gb|EET76091.1| DNA gyrase subunit A [Rothia mucilaginosa ATCC 25296]
          Length = 841

 Score =  559 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 219/774 (28%), Positives = 363/774 (46%), Gaps = 38/774 (4%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
               +S+    V EN+  + +   +E  +L Y+ S I  RA+PD RDG KPV RRI++ M
Sbjct: 5   SKSAVSDYPVDVVENIVDIDVSAEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILYMM 64

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            +MGL       KSAR+ GEV+GKLHPHGD ++YD++VRLAQPF  R PL+ G GNFG++
Sbjct: 65  QQMGLRPDKGHVKSARVTGEVMGKLHPHGDAAIYDAMVRLAQPFALRLPLVDGHGNFGSL 124

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           D D  AA RYTEARM   A+ +   ++ED VDF   Y+ +  +P V P+ FPNLL NGT+
Sbjct: 125 D-DGPAAARYTEARMAPAAQALTADLEEDVVDFVPNYDNQFMQPSVLPAAFPNLLVNGTT 183

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT++  HN++E+      LI +PE +++ ++++I GPD PTGG IV     I +
Sbjct: 184 GIAVGMATNMAPHNLREVIAGTRHLIAHPEATLKDIMKFIPGPDLPTGGTIV-GLGGIRD 242

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG F+ RA+  +E+V      IVVTE+PY V   ++IEKI + + +K++  + D+
Sbjct: 243 AYETGRGTFKTRAKVSIEQVSPRKQGIVVTELPYMVGPEKVIEKIKDGVNSKKLTGISDV 302

Query: 302 RDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            D +   +   ++       +P+ ++ +++  + +E  F +N   L     PQ + L  +
Sbjct: 303 VDLTDRTNGLRLVIEIKNGFNPEAVLAALYKHTPLEDSFGINNVALVD-GQPQTLGLLDL 361

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           ++ ++ HR  V+ RR+ FR+     R+ +++GLL+A L+IDE+I IIR  D+    +  +
Sbjct: 362 MRVYIDHRLNVVRRRTEFRLGKRTDRLHLVEGLLVAILDIDEVIQIIRESDETAQAREKL 421

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              F LT+ Q + IL LRLR L K    ++++E + L  E  ++  +L S       ++ 
Sbjct: 422 KVVFDLTDTQANHILELRLRQLTKYSRLELEAERETLQQEIAELQRILGSDAALRELVSE 481

Query: 478 EIREVKEIFSKST----DLGRRRTTFCEVSRADKATLQ----QAMIEKEPITVVISNRGW 529
           E+ EV E +                  E   A   T +       I  +P  V++S  G 
Sbjct: 482 ELAEVAERYGTDRRTQLKTKDEMQVAIEAVTAQSKTKKSLGLALEIADDPCWVLLSASGM 541

Query: 530 IRSLKSHSVD---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL------ 580
           +       +    +      + D     +       I  +++ G+   L   ++      
Sbjct: 542 MGRTPGKPIREALVDPGKRFKHDVFTSIVPTTARGEIGAVTSAGRMVRLSVMDIAVLDEN 601

Query: 581 --LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                         L+ L   + +V          L + ++ G    +     +  T   
Sbjct: 602 GGTPSMASAVKAAELVQLAKGEKLVALVPL--NTVLALATAGGVIKRLNPDYPLNQTE-- 657

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              +K+   +++        D   +  V  + KLL F   ++    R G G+      DG
Sbjct: 658 WDIMKLKDGDEIVAAAPCPTDDAVLTFVTRDAKLLTFDAAKVRPQGRTGGGIAGIKLADG 717

Query: 696 GISDVICFK-ICEGLTWIDSAGRSYN----RSENDLLGWLGKRGGVGSLVPKGF 744
                +      +    +            +           R   G    +  
Sbjct: 718 DRLIALGVTAPGDAAEVVTVTNGKDGLASAKVTALSEYPQKGRATGGVRAHRFL 771


>gi|73916836|gb|AAZ93286.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916838|gb|AAZ93287.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  559 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 214/747 (28%), Positives = 388/747 (51%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +     L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNCEILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I+KGL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVKGLISVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|325978153|ref|YP_004287869.1| topoisomerase IV subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178081|emb|CBZ48125.1| topoisomerase IV subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 819

 Score =  559 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 211/747 (28%), Positives = 376/747 (50%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  +D+D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + LID+P   ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGA-IIQGKDGIRKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +  
Sbjct: 241 RTDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR+ ++  
Sbjct: 301 ELKKDADEQTVLNYLLKYTDLQVNYNFNMVAID-NYTPRQVGIIPMLTSYIAHRKAIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +D++IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKVSYEFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L      + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDERTMYNVMKRELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R T  +           ++I +E   V ++  G+I+     S +   +  +  ++ 
Sbjct: 478 ----RLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRTSPRSYNASTVEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ +  G     P   L   R       L   + +     +    
Sbjct: 534 DELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRWKDIGEHLSQTITNFATDESVLYA 593

Query: 607 -VYDS--TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
            + D   +      +  G     E  E         K   + K+ + ++ +  +  +  D
Sbjct: 594 EIVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKNADDSVVTISPIALD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   L F+I+++P +  +  GV+  + KD            +    +    R 
Sbjct: 654 DVMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKDDDFVASAFVANTDSFFIL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +     L     R   G  V +   
Sbjct: 712 SLKRMATELIPATSRANRGLQVLRELK 738


>gi|309781097|ref|ZP_07675835.1| DNA topoisomerase IV, A subunit [Ralstonia sp. 5_7_47FAA]
 gi|308920163|gb|EFP65822.1| DNA topoisomerase IV, A subunit [Ralstonia sp. 5_7_47FAA]
          Length = 780

 Score =  559 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 272/772 (35%), Positives = 419/772 (54%), Gaps = 48/772 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPSEPAEALTLGAYAERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRSDAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  A +ALI + +++   L++Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVAAATVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------ 297
             GRG  +VRARW +EE+ RG W +VV E+P      +++E+I EL   K          
Sbjct: 241 ESGRGSLKVRARWKIEELARGQWQLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSP 300

Query: 298 ------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
                       L+ +RDES     VR+V  PK++++D      ++   + +E+   +N+
Sbjct: 301 DQLTMKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R   + RR+  R+  ++ R+ IL+G  +  L ++++
Sbjct: 361 VMIGTDGRPRQKGLAEILREWITYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRVEDV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  ++PK  ++  F+L++ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D 
Sbjct: 421 IRIIRESEEPKAALIQVFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + +        RRT   E  RA      +  +  EP+TV+
Sbjct: 481 LLKSETMMRRRIIKEIETDAKQYGD-----DRRTFIQEERRAAA----EVKVVDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD-----GKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I   F   +   L++ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTFAGHAEQSLVISTRGGNGFLAKVGDMVGRQKAG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++      V  D   VA + E  +LL+F I ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPAPVPADAYGVACLSEGGRLLLFQISELKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNR------SENDLLGWLGKRGGVGSLV 740
             +   + F        +   G    +      +      + GKR   G  +
Sbjct: 712 EALLQAVAFGAA--GFVLSGTGPRGGKAVEQTMTTRAQEPYAGKRARKGKTL 761


>gi|171779307|ref|ZP_02920271.1| hypothetical protein STRINF_01148 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281924|gb|EDT47355.1| hypothetical protein STRINF_01148 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 819

 Score =  559 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 214/747 (28%), Positives = 379/747 (50%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +D+D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLRDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + LID+P   ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGA-IIQGKDGIRKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +  
Sbjct: 241 RTDIETLRGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR++++  
Sbjct: 301 ELKKDADEQTILNYLLKYTDLQVNYNFNMVAID-NYTPRQVGIIPMLTSYIAHRKDIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENLKVSYEFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L      + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDERTMYNVMKRELREVKKKFANP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R T  +           ++I +E   V ++  G+I+     S +   +  +  ++ 
Sbjct: 478 ----RLTELQAEAQTIEIDVASLIVEEDTYVSVTKGGYIKRTSPRSYNASTVEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ +  G     P   L   R           + +   ++ ++ A
Sbjct: 534 DELVFVSQAKTTQHLLIFTNLGNVIYRPVHELTDIRWKDIGEHLSQTITNFATDEYVLYA 593

Query: 606 FVYDST--CKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSEEK-MKLVVKVTGD 659
            + D          +  G     E  E         K   + K+  ++  +  +  +  D
Sbjct: 594 EIVDEFGPQTYFAATKYGQIKRFERKEFTPWRTYKSKAVKYAKLKKDDDIVVTIAPIALD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V V+  N   L F+ID++P +  +  GV+  + KD            E    +    R 
Sbjct: 654 DVMVITHNGYALHFNIDEVPVVGAKAAGVKSINLKDDDFVVSAFIANTESFFIL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +     L     R   G  V +   
Sbjct: 712 SLKRMATELIPAASRANRGLQVLRELK 738


>gi|227513445|ref|ZP_03943494.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227083318|gb|EEI18630.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
          Length = 812

 Score =  559 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/752 (28%), Positives = 387/752 (51%), Gaps = 28/752 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             ++ +SL   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +  AF+K
Sbjct: 2   SKIENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L+ +D+D VD+   +++ + EP V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L L  +P+ +++ L++++ GPDFPTG  IV+  + I ++Y  GRG   VR+
Sbjct: 182 NLGEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGA-IVQGIDGIKKAYETGRGKVIVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IVV+EIPY+V K++L+++I EL + K++  + ++RD+S  +   ++ 
Sbjct: 241 KTKIESLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKKVDGISEVRDQSDREGMSIVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R +D   ++  +F  +D++  +  NM  +   R P+ + L  IL  +L  +REV+ +
Sbjct: 301 ELKRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMR-PERLSLKQILVSYLEFQREVIKK 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F +Q    R  I++GL+ A   +D++I  IR        +  +V  +  +E Q DAI
Sbjct: 360 RTQFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVKTYQFSEKQSDAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q++ E   L  +      +L   K+    +A E+R + + +     
Sbjct: 420 VALQLYRLTNTDVTQLEKESQELSDKITGFKKILADPKELNKVLARELRAIAKNYRNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--SALHFKEGD 549
               R T  +   A        +I  E + V++S+ G+I+     S     +    K+ D
Sbjct: 478 ----RRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRSSIRSYKASGNENGLKDED 533

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
                   +  D + + ++ G     P      +  +  GE I   I L+++++I+  F 
Sbjct: 534 YPIFMKQMNARDHLFMFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFA 593

Query: 608 Y---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL---KVSS-EEKMKLVVKVTGDH 660
           +         L+ +  G+    + +++       K      K+   + ++  +  +    
Sbjct: 594 FSSLKEKGLFLIATDDGHIKRTKLTDLAPGRTYKKHAYMYEKLKDPKSRIVAIDYLADPD 653

Query: 661 ----VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++ +    L + ID++P    R  GV+ Q+  DG +   +   + +        
Sbjct: 654 ASGKLLLISKLGLALRYGIDEVPINGARTTGVKSQNLADGDVITNLQL-VNDDDVIAIVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R   +           R   G ++ +   ++
Sbjct: 713 QRGAFKKLAVKEIPATSRARKGVMILRELKQN 744


>gi|227524587|ref|ZP_03954636.1| DNA topoisomerase, ATP-hydrolyzing [Lactobacillus hilgardii ATCC
           8290]
 gi|227088262|gb|EEI23574.1| DNA topoisomerase, ATP-hydrolyzing [Lactobacillus hilgardii ATCC
           8290]
          Length = 812

 Score =  559 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 213/752 (28%), Positives = 386/752 (51%), Gaps = 28/752 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             ++ +SL   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +  AF+K
Sbjct: 2   SKIENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L+ +D+D VD+   +++ + EP V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L L  +P+ +++ L++++ GPDFPTG  IV+  + I ++Y  GRG   VR+
Sbjct: 182 NLGEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGA-IVQGIDGIKKAYETGRGKVIVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IVV+EIPY+V K++L+++I EL + KR+  + ++RD+S  +   ++ 
Sbjct: 241 KTKIESLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKRVDGISEVRDQSDREGMSIVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R +D   ++  +F  +D++  +  NM  +   R P+ + L  IL  +L  +REV+ +
Sbjct: 301 ELKRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMR-PERLSLKQILVSYLEFQREVIKK 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F +Q    R  I++GL+ A   +D++I  IR        +  +V  +  +E Q DAI
Sbjct: 360 RTQFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVKTYQFSEKQSDAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q++ E   L  +      +L   K+    +A E+R + + +     
Sbjct: 420 VALQLYRLTNTDVTQLEKESQELSDKITGFKKILADPKELNKVLARELRAIAKNYRNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--SALHFKEGD 549
               R T  +   A        +I  E + V++S+ G+I+     S     +    K+ D
Sbjct: 478 ----RRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRSSIRSYKASGNENGLKDED 533

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
                   +  D + + ++ G     P      +  +  GE I   I L+++++I+  F 
Sbjct: 534 YPIFMKQMNARDHLFMFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFA 593

Query: 608 Y---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL---KVSSEEKMKLVVKVTGD-- 659
           +         L+ +  G+    + +++       K      K+   +   + +    D  
Sbjct: 594 FSSLKEKGLFLIATDDGHIKRTKLTDLAPGRTYKKHAYMYEKLKDPKSRIVAIDYLADLD 653

Query: 660 ---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++ +    L + ID++P    R  GV+ Q+  DG +   +   + +        
Sbjct: 654 ASGKLLLISKLGLALRYGIDEVPINGARTTGVKSQNLADGDVITNLQL-VNDDDVIAIVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R   +           R   G ++ +   ++
Sbjct: 713 QRGAFKKLAVKEIPATSRARKGVMILRELKQN 744


>gi|254421736|ref|ZP_05035454.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Synechococcus sp. PCC 7335]
 gi|196189225|gb|EDX84189.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Synechococcus sp. PCC 7335]
          Length = 803

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/747 (32%), Positives = 387/747 (51%), Gaps = 34/747 (4%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K AR+VG+V+GK HPHGDQ+V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRIMYAMHELGLVPDRPFRKCARVVGDVLGKYHPHGDQAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQGVDEDAVD 153
           YD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+ ++    +L  V E  VD
Sbjct: 61  YDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLAEIGHAALLGEVSEATVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F D ++    EP+V P++ PNL+ NG+SGIAVGMAT+IP HN+ E+ +  +AL+D P +S
Sbjct: 121 FIDNFDSSQQEPIVLPAQLPNLILNGSSGIAVGMATNIPPHNLGEVVDGLIALVDRPNLS 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG-----SWCI 268
            E L + I GPDFPTG  I++++  I ++YR GRG   +R     EE+  G        I
Sbjct: 181 NESLFKLIPGPDFPTGAEIIDTK-GIHDAYRTGRGSIPIRGIANFEEIRPGKGKRSRQAI 239

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           VVTE+PYQV K+  I KIA L+   RI  + DIRDES  +   V+    R   P L++  
Sbjct: 240 VVTELPYQVNKASWITKIASLVNQGRIDGISDIRDESDREGMRVVIELKREAQPQLILND 299

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++ ++ ++T F   M  +     P+ + L  IL+ +L  R   L R+ S  ++    R  
Sbjct: 300 LYKMTALQTNFGALMLAIED-GQPRQLSLKEILEAFLNFRESTLIRQYSHELEQKRNRFH 358

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FSLTENQVDAILNLRLRSLRKLEEY 445
           I++GLLIA  ++D+II I+RN        V     F L++ Q D+IL + LR L  LE+ 
Sbjct: 359 IVEGLLIALDSLDDIIDILRNAPDGTTAKVEMIEAFDLSDRQADSILAMPLRRLTGLEQQ 418

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +++ E D L     ++++L++        +  E+R +K+ F        R  T  E  + 
Sbjct: 419 KLRDESDELDERINQLETLVSDRNVLMKSLKKELRALKKKFGD--RRRTRIQTEAERVKE 476

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
           ++   + A  E E   ++   R              +  +   +    +  D        
Sbjct: 477 EQVLAEIAAEESEEEFILEFTRKGYVRRASPKTRTRRKDASGPTKALEEFDDVTIQTEIT 536

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH-----NQDIVTAFVYDS-- 610
           + T+ +L+L+ +GKA+TL   ++   +   + + L+  L          +VT  V     
Sbjct: 537 NPTEEVLVLTQEGKAFTLSVSDVPIAQRQSKGVPLIGLLPDAVGSTPDSVVTQIVLSEAR 596

Query: 611 -TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENR 668
              +L++V++KG    +  SE+   T +G T +K+  ++ +K       G  + +     
Sbjct: 597 LAQQLILVTAKGRVKRLPASEMSNLTGRGLTAVKLKDDDLLKHAFIAPMGSDLVLASSGG 656

Query: 669 KLLIF--SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ++L F    DQ+PEMSR  +G +           V C  +    T I  + + Y +    
Sbjct: 657 RVLRFRIDADQLPEMSRTAQGPQGIRLPKSERL-VGCIPVSPKDTLILVSNKGYGKRILV 715

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  RGG+GS   K   +S   +S
Sbjct: 716 STFKTSNRGGIGSQSFKFNLKSDALVS 742



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 5/154 (3%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG-NLLSGRGHGEAIQLLID 595
              L+A+  K+ D LK A  A     ++L S+ G+        + L            I 
Sbjct: 623 GRGLTAVKLKDDDLLKHAFIAPMGSDLVLASSGGRVLRFRIDADQLPEMSRTAQGPQGIR 682

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMK 651
           L  ++ +V          L++VS+KG    +  S    + R G         + S+  + 
Sbjct: 683 LPKSERLVGCIPVSPKDTLILVSNKGYGKRILVSTFKTSNRGGIGSQSFKFNLKSDALVS 742

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           L V V   ++ V+ +  +    +ID +P   R +
Sbjct: 743 LNVAVPEANLTVLTDQGRAAKIAIDSVPLQGRSQ 776


>gi|9230563|gb|AAF85902.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 214/748 (28%), Positives = 387/748 (51%), Gaps = 27/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   ++KL+E++ GPDFPTGG I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGG-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++   F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYFFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + ++++  +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIISDERTMYNLMKKELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ +T G     P   L   R           + +   N++I+  
Sbjct: 534 DRLIFIQSAKTTQHLLMFTTFGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D        +  G    VE  E         K   + K+  E +++  V  +  
Sbjct: 594 EVVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPIKL 653

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V ++ +N   L F+I+++P +  +  GV+  + K                  +    R
Sbjct: 654 DDVVLISQNGYALRFNIEEVPVVGAKAAGVKAINLKADDALQAAFICNMSSFYLL--TQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  +        R   G  V +   
Sbjct: 712 GSLKRVSIDEIPATSRAKRGLQVLRELK 739


>gi|217964570|ref|YP_002350248.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes HCC23]
 gi|217333840|gb|ACK39634.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes HCC23]
 gi|307570866|emb|CAR84045.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes L99]
          Length = 819

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 207/758 (27%), Positives = 391/758 (51%), Gaps = 28/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTGGII    + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPMSTTDDIMKIVKGPDFPTGGIIQG-IDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++  + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINK-KRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S    +
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDL 596
            + L  KE D        ++ D +LL ++ G     P   L   R          L  DL
Sbjct: 529 GAELAMKERDHAIFIQKMNSLDTLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I  A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRAAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKDDDELLN 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGL 709
           V  + G + + +   N   L + I +IPE   R  GV+  + K G  +   +  +  +  
Sbjct: 649 VYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLKQGDIVVGGVVLREGDAK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
             + +  R   +           R   G L+ +    +
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSN 746


>gi|16803327|ref|NP_464812.1| DNA topoisomerase IV subunit A [Listeria monocytogenes EGD-e]
 gi|224501768|ref|ZP_03670075.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-561]
 gi|254829956|ref|ZP_05234611.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 10403S]
 gi|284801672|ref|YP_003413537.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5578]
 gi|284994814|ref|YP_003416582.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5923]
 gi|16410703|emb|CAC99365.1| parC [Listeria monocytogenes EGD-e]
 gi|21328243|gb|AAM48489.1| DNA topoisomerase IV subunit A [Listeria monocytogenes]
 gi|284057234|gb|ADB68175.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5578]
 gi|284060281|gb|ADB71220.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5923]
          Length = 819

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/764 (27%), Positives = 396/764 (51%), Gaps = 29/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTGGII    + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQG-IDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++  + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINK-KRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ +  +      R T  +   A+     + ++  E + V ++  G+++     S    +
Sbjct: 475 KKKYKTA------RRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDL 596
            + L  KE D        ++ D +LL ++ G     P   L   R          L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLS 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGL 709
           V  + G + + +  +N   L +SI +IPE   R  GV+  + K    +   I     E  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
             + +  R   +           R   G L+ +    +  +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPHRFIG 752


>gi|302542024|ref|ZP_07294366.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302459642|gb|EFL22735.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 816

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 228/774 (29%), Positives = 374/774 (48%), Gaps = 36/774 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S      EE +  + +   ++  YL YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   SPPPDDFEERILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDS 125
                F K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R P++ G GNFG++   D 
Sbjct: 68  RPERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DED VDF   Y+  + EPV  P+ +PNLL NGTSGIAV
Sbjct: 128 PAAMRYTECRMASATSLMTESIDEDTVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI +P   ++ L+ ++ GPD PTGG IV     + ++Y  
Sbjct: 188 GMATNMPPHNLGEVVSAARHLIRHPNADLDTLMRHVPGPDLPTGGQIV-GLAGVRDAYET 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE+V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +
Sbjct: 247 GRGSFKIRATVAVEDVTPRRKGLVVTELPFTVGPEKVISKIKDLVGAKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++       +P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +
Sbjct: 307 DRAHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           L HR +V+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ +     K  ++ RF
Sbjct: 366 LDHRFDVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRSSENSAQAKETLMDRF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q   IL+  LR L K +  +++SE D L AE E++  +L+S  +    ++ E+  
Sbjct: 426 DLSDVQTQYILDTPLRRLTKFDRIELESERDRLNAEIEELTRILDSDAELRKLVSSELAT 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V + F        RRT   E + A  A +   + +     ++ S     R+         
Sbjct: 486 VGKKFGTP-----RRTVLLESADAPVAAVPLEVADDPCRVLLSSTGLLARTANGEPFAGE 540

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--------EAIQLL 593
                + D +  A+ A     +  +++ G+   L   +L                 I   
Sbjct: 541 QTKRSKHDVIVSAVPATARAEVGAVTSTGRLLRLQVIDLPQLPESPGTPNLAGGAPIAEF 600

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + L   ++++     D +   L + + +G    V   +  A+ ++    + +   +++  
Sbjct: 601 LSLEEGEELICLTTLDESSPGLAIGTEQGVVKRV-VPDYPAH-KEELEVIGLKEGDRIVG 658

Query: 653 VV--KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEG 708
            V  +   + +  + +N  LL +   Q+    R   G+       D  +           
Sbjct: 659 AVELRTGEEDLVFITDNAHLLRYPAGQVRPQGRAAGGMAGVKLAPDAKVISFTAVDPAVD 718

Query: 709 LTWIDSAGRSYN---------RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +G             +           R   G    +        + +
Sbjct: 719 AVVFTVSGTHGTLDDSVQQTAKLTPFDQYPRKGRATGGVRCQRFLKGEDCLVLA 772


>gi|47097247|ref|ZP_00234808.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254898548|ref|ZP_05258472.1| DNA topoisomerase IV subunit A [Listeria monocytogenes J0161]
 gi|254911961|ref|ZP_05261973.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
 gi|254936288|ref|ZP_05267985.1| DNA topoisomerase IV [Listeria monocytogenes F6900]
 gi|47014372|gb|EAL05344.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608878|gb|EEW21486.1| DNA topoisomerase IV [Listeria monocytogenes F6900]
 gi|293589924|gb|EFF98258.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
          Length = 819

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/764 (27%), Positives = 397/764 (51%), Gaps = 29/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTGGII    + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQG-IDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++  + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINK-KRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ +  +      R T  +   A+     + ++  E + V ++  G+++     S    +
Sbjct: 475 KKKYKTA------RRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDL 596
            + L  KE D        ++ D +LL ++ G     P   L   R          L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLS 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGL 709
           V  + G + + +  +N   L +SI +IPE   R  GV+  + K    +   I   + E  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMLNEQK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
             + +  R   +           R   G L+ +    +  +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPHRFIG 752


>gi|67906499|gb|AAY82606.1| predicted topoisomerase IV subunit A [uncultured bacterium
           MedeBAC35C06]
          Length = 743

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 273/744 (36%), Positives = 447/744 (60%), Gaps = 22/744 (2%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL+   E+ YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD G+ +KKSAR 
Sbjct: 7   NISLKKYAEDAYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+ D   S AA RYTE+++T
Sbjct: 67  VGDVIGKFHPHGDSAAYEAMVLMAQDFSFKYPLVDGQGNWGSQDDPKSFAAMRYTESKLT 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + A+L++  +    VD++  ++    EPV+FP+K P++L NGTSGIAVGMAT I SHN+ 
Sbjct: 127 KFAKLLIDELKAGTVDWQPNFDGSLLEPVIFPAKVPSILLNGTSGIAVGMATDISSHNIN 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A + +++NP+ + + LL+ I GPDF     IV + E + E Y  GRGGF+++A W 
Sbjct: 187 EVLDATIHVLENPKSTTKDLLKIIKGPDFSNNAKIVANSEELFEIYSTGRGGFKIQANWD 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFP 315
            E        IV+T +PYQ   S+++E+IA+ ++ K++P++ D+ DE       R+V+  
Sbjct: 247 KE-----GNDIVITSLPYQASGSKILEQIADQMLNKKVPMIVDLADEGDHQEPVRLVISL 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+  ++ D +M  +F  +D++  +  NMN++S+   P+V  LD +LKEW+  R+  + R+
Sbjct: 302 KSNRVNADDVMNHLFATTDLQKSYRFNMNLISLSGNPRVFALDELLKEWIKFRKITVTRK 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
              R+  ++ R+ IL GL I YLNIDE+I IIR  D+PK  +  +F L++ QV+AIL +R
Sbjct: 362 LENRLDQVNDRLHILDGLAIVYLNIDEVIKIIRESDEPKKELSKKFKLSDIQVNAILEIR 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLE+ +I++E + L  E+ +I+ +L S  +    I  E+ E+K+ F +      R
Sbjct: 422 LRQLAKLEQIKIETEQNKLSEEQSEIEKILASRSRLKTLIKNELIEIKQEFGEE-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           ++   E S A K   ++  I  EP+T+V+S  GWIRS K H +D S+L ++  D L+   
Sbjct: 477 KSPIIESSSA-KVFSEEETIVTEPVTIVLSKAGWIRSAKGHEIDPSSLSYRGDDLLQDFC 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +    + L+++GKAYTL A +L S RG G+ I   I  +      +  + +   K +
Sbjct: 536 RGKSNQNTVFLASNGKAYTLSAHSLPSARGLGDPITGRISADSGIIFKSCAIGEQEDKYV 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIF 673
           V +S G  +I + + +I+N + G+ F+KV     +   +K   DH  +  +    ++LIF
Sbjct: 596 VSNSAGFGYISDFASMISNKKSGRAFMKVPEGADVHKAIKYREDHEFIVAISNIGRMLIF 655

Query: 674 SIDQIPEMSRGKGVRLQSY-----KDGGISDV-ICFKICEGLTWIDSAGRSYNRSENDLL 727
           +I+++P + +GKG ++ +      K G  S   I     E +  IDS  +       DL 
Sbjct: 656 NIEELPFLQKGKGNKIINIPTPKFKSGEESMTHIELLAPESILRIDSGKQHMRLKFKDLQ 715

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFL 751
            ++  R   G+++P+G+ +    +
Sbjct: 716 NYISTRAKRGNMLPQGYRKVDSII 739


>gi|320546628|ref|ZP_08040940.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus equinus
           ATCC 9812]
 gi|320448683|gb|EFW89414.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus equinus
           ATCC 9812]
          Length = 819

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 215/747 (28%), Positives = 377/747 (50%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLHDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + LID+P   ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGA-IIQGKDGIRKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +  
Sbjct: 241 RTDIETLRGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR+E++  
Sbjct: 301 ELKKDADEQTILNYLLKYTDLQVNYNFNMVAID-NYTPRQVGIIPMLTSYVAHRKEIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +D++IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKISYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L        +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLSNTDIVALENEEAELRERITMFKAIIGDERTMYNVMKRELREVKKKFANP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R T  +           ++I +E   V ++  G+I+     S +   +  +  ++ 
Sbjct: 478 ----RLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRTSPRSFNASTVEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ +  G     P   L   R       L   + +     +    
Sbjct: 534 DELIFVSQAKTTQHLLIFTNLGNVIYRPVHELTDIRWKDIGEHLSQTITNFATDESVLYA 593

Query: 607 -VYDST--CKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSEEK-MKLVVKVTGD 659
            + D          +  G     E  EI        K   + K+ +++  +  +  +  D
Sbjct: 594 EIVDEFGPQTYFAATKLGQIKRFERKEISPWRTYKSKAVKYAKLKNDDDMIVTISPIALD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V VV  N   L F+ID++P +  +  GV+  + KD            E    +    R 
Sbjct: 654 DVMVVTHNGYALHFNIDEVPVVGAKAAGVKSINLKDDDFVVSTFIANTESFFIL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +  L     R   G  V +   
Sbjct: 712 SLKRMSTDLIPATNRANRGLQVLRELK 738


>gi|323339871|ref|ZP_08080140.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis
           ATCC 25644]
 gi|323092744|gb|EFZ35347.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis
           ATCC 25644]
          Length = 817

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 217/757 (28%), Positives = 391/757 (51%), Gaps = 30/757 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T    N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  F  
Sbjct: 2   TETHSNIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTFDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA R
Sbjct: 62  PFRKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQYWKLREPLIEMHGNNGSMDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A  +L+ +D+  V+    +++ + EP V P++FPNLL NG +GI+ G AT 
Sbjct: 122 YTEARLSEIAAEMLKDIDKKTVEMVPNFDDTEFEPTVLPARFPNLLVNGATGISAGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ E   A + L+D+PE  ++ L+++I GPDFPTGGI++   + I ++Y  GRG  
Sbjct: 182 IPTHNLSETIHATIYLMDHPEAELDDLMKFIKGPDFPTGGIML-GLDGIKKAYETGRGKA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR  +E+V      IV+ EIPY+V K+ L++KI E+ + K+   + ++RDES  +  
Sbjct: 241 MLRARTQIEDVRGAKQQIVIEEIPYEVNKALLVKKIDEIRLQKKAEGIAEVRDESDREGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  +   ++  +F  +D++  +  NM  +   + P+ + L  IL+ +L H+R 
Sbjct: 301 RIVVELKKDANAQGILNYLFKNTDLQISYNFNMVAIDH-KCPKHVGLKKILESYLEHQRI 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ +R+ F +     R  I+ GL+ A   +D++I  IR        K  +VS F  TE Q
Sbjct: 360 VVTKRTEFDLNKAKERKHIVDGLIKALSILDDVIKTIRASKNKKDAKANLVSSFDFTEKQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +   +++E ++L     +   +LN+GK+    I  E++ + + + 
Sbjct: 420 AEAIVSLQLYRLTNTDVTALQNEAEDLERRIVEYTKILNNGKELDKVIKKELKTIDKKYG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
                   R T       +     + M+ +E + +++S  G+++     S    D S   
Sbjct: 480 TP------RLTEIRAEIEELKIDTEVMVAQEDVMLLVSRDGYVKRSSLRSFKASDESDNG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDI 602
            KE D + +   A+T D +L+ +  G     P  +      +  GE +   + L+ ++ +
Sbjct: 534 LKEEDVVILMKVANTLDHLLMFTNKGNVIYRPIHDIVDSRWKDTGEHLSQTVGLSDDERV 593

Query: 603 VTAFVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVK 655
           + AF +DS       +  + +G        ++        + +TF+K+ ++ +++ +   
Sbjct: 594 IEAFTFDSLEKEGAFVFATKEGMIKQTLLKDLKPGRTYRSRAQTFIKLKTDTDEVIMAEF 653

Query: 656 VTGD----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710
           V  +     V         L + ++++P    R  GV+    +D  +  V      + + 
Sbjct: 654 VETENEDLQVFCTTHAGYGLRYLLNEVPTTGARTSGVKCMDLRDDFLISVSLVSEHDEVA 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            +    R   +           R   G  + +   R+
Sbjct: 714 IV--TQRGAFKKMKVDKIPENSRARRGVQILRELKRN 748


>gi|111657636|ref|ZP_01408369.1| hypothetical protein SpneT_02001168 [Streptococcus pneumoniae
           TIGR4]
          Length = 817

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 212/743 (28%), Positives = 385/743 (51%), Gaps = 27/743 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ V
Sbjct: 1   MSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++
Sbjct: 61  GNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEI 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+
Sbjct: 121 AGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++  +E
Sbjct: 181 IDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSKTEIE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           ++  G   IV+ EIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     + 
Sbjct: 240 KLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F 
Sbjct: 300 ANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILARSRFD 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRL 436
            +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ L+L
Sbjct: 359 KEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQL 418

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R
Sbjct: 419 YRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------R 472

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553
            +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D L  
Sbjct: 473 LSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIF 532

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFV--- 607
              A TT  +L+ ++ G     P   L   R           + +   N++I+   V   
Sbjct: 533 VQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQ 592

Query: 608 YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAV 663
           +D       V+  G    VE  E         K   + K+  + +++  V  +  D V +
Sbjct: 593 FDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVL 652

Query: 664 VGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           V +N   L F+I+++P +  +  GV+  + K+  +              +    R   + 
Sbjct: 653 VSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRGSLKR 710

Query: 723 ENDLLGWLGKRGGVGSLVPKGFP 745
            +        R   G  V +   
Sbjct: 711 VSIEEILATSRAKRGLQVLRELK 733


>gi|240142252|ref|YP_002966762.1| DNA gyrase subunit A [Methylobacterium extorquens AM1]
 gi|240012196|gb|ACS43421.1| DNA gyrase subunit A [Methylobacterium extorquens AM1]
          Length = 894

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 233/825 (28%), Positives = 372/825 (45%), Gaps = 98/825 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK  S    +E+ YL+Y +ST+  RA+PD+RDG KPVHRRI+ +M+E          KSA
Sbjct: 18  VKRTSFTEEMEDSYLSYMMSTVTARALPDVRDGMKPVHRRIMFSMAESNFTADRKHVKSA 77

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           ++VG+V+G+ HPHGD ++YD++VR+ Q +  RYPLI  QGNFG+ID D  AA RYTE+R+
Sbjct: 78  KVVGDVMGQYHPHGDTAIYDAMVRMGQHWSLRYPLIDPQGNFGSIDNDPPAAMRYTESRL 137

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  + E  VDFR  Y+    EPVV P++FPNLL NG  GIAVGMAT+IP H++
Sbjct: 138 ERLAGHLVADLGEGVVDFRPNYDSSCKEPVVLPARFPNLLVNGGIGIAVGMATNIPPHHL 197

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  EA L  + NP +++++++  + GPD PTGG ++  R  I +++  GRG  RV    
Sbjct: 198 GETIEACLLRLANPAVTLDEIMRVMPGPDLPTGG-VIHGRSGIRQAFATGRGAIRVSGVA 256

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFP 315
            VEE   G   IV+ ++PY V K+  +EK+AEL+  K+I  + DIRDE S +    ++  
Sbjct: 257 SVEEGKAGRRRIVIAQLPYLVVKAEFVEKLAELVEEKKIEGISDIRDESSDKAGIRIVID 316

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  DP +++  +   +D  T   +NM  L     P+ M +  +L E++  RREV+ RR
Sbjct: 317 VRKDADPAVVLNRLREKTDFVTNLNVNMTCLDSRGRPRTMGVLQVLGEFVDFRREVVRRR 376

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------------- 415
           +  R++     +    GL  A L IDEI+A+IR+                          
Sbjct: 377 TMHRLEKTREDLHRQIGLYAATLRIDEIVALIRSSHDIDEARAALLALDFDTSGEFAQLL 436

Query: 416 -------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                   +   F L++ QV AIL +RL  L  LE  +I      L  E      +LN  
Sbjct: 437 FEVDPDVPVGDTFRLSDAQVRAILEMRLSRLTGLERDKIAERARELSVEIGGHLEILNVK 496

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 +  E+ E+K  F        RRT   +   A  A   + ++E + I V ++  G
Sbjct: 497 AVLDGVVRRELEEIKAAFPD-----GRRTAIED--SALDALSDEDLVELKDIVVTVTAGG 549

Query: 529 WIRSLKSHSVDLSALHFKE--GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GR 584
           +++     +         E   D +   +   T   +L  +  G A+   A  L      
Sbjct: 550 YVKRTDLPAYMGRQKAADEAVEDPVATTIVCTTKTPLLFFTNRGLAHAEVAHKLPEAAPN 609

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKG 638
             G A+   ++L   + +                 L+ V+  G     + S+     + G
Sbjct: 610 VRGRALVNFLELKAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRNDASDFARVNKGG 669

Query: 639 KTFLKVSSEE-----KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK---GVRL 689
           K  +K+  E      K+  V+ V+  D VA+   +     F++  +  M + +   GV  
Sbjct: 670 KVAIKLEDENGEPQGKLVSVLLVSPEDDVALASRDGLCCRFNVADLRVM-KSRDSVGVAG 728

Query: 690 QSY-KDGGISDVICFKICE----------------------------------------- 707
            S  +   +  V   +  E                                         
Sbjct: 729 ISLGRKDKVISVSVLRHFEATGTEREAYLAGGSARTKDETTGEPATFELPSDRMLAMQEA 788

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      + +  +     +  RGG G    K   R+G  ++
Sbjct: 789 EQLILSVTENGFAKRTSSHAYRITARGGQGVEAAKLADRTGDLVA 833



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVV 664
           ++   +L V+  G A            R G      K++    + +  ++ V    V V+
Sbjct: 787 EAEQLILSVTENGFAKRTSSHAYRITARGGQGVEAAKLADRTGD-LVALMPVEEQDVLVI 845

Query: 665 GEN-RKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
             +  K    S  ++P M+RG +G R  +  +G  + V   KI   
Sbjct: 846 TTDAGKTFRTSAAEVPIMARGTQGTRAFAL-EGRQAIVSVVKIAAE 890


>gi|306831249|ref|ZP_07464409.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426485|gb|EFM29597.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 819

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/747 (28%), Positives = 379/747 (50%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  +D+D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + LID+P   ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGA-IIQGKDGIRKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +  
Sbjct: 241 RTDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR+ ++  
Sbjct: 301 ELKKDADEQTVLNYLLKYTDLQVNYNFNMVAID-NYTPRQVGIIPMLTSYIAHRKAIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +D++IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKVSYEFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L      + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDERTMYNVMKRELREVKKKFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R T  +           ++I +E   V ++  G+I+     S +   +  +  ++ 
Sbjct: 478 ----RLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRTSPRSYNASTVEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L     A TT  +L+ +  G     P   L   R           + +   ++ ++ A
Sbjct: 534 DELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRWKDIGEHLSQTITNFATDEYVLYA 593

Query: 606 FVYDS--TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
            + D   +      +  G     E  E         K   + K+ + ++ +  +  +  D
Sbjct: 594 EIVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKNADDSVVTISPIALD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   L F+I+++P +  +  GV+  + KD            +    +    R 
Sbjct: 654 DVMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKDDDFVASAFVANTDSFFIL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +     L     R   G  V +   
Sbjct: 712 SLKRMATELIPATSRANRGLQVLRELK 738


>gi|229018786|ref|ZP_04175635.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1273]
 gi|228742536|gb|EEL92687.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1273]
          Length = 807

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 219/751 (29%), Positives = 382/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  I GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVIKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    + ++ + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINH-RRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +DE+I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAKFGFTEAQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E   L  +  ++ S+L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEQEAAELSKKIIELQSILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ ILL +  G    LP   +   R     + +  L+ L  ++ ++
Sbjct: 533 KEGDILLERFDTNTTETILLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVTLERDETLI 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  E+++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKEDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|229075490|ref|ZP_04208479.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-18]
 gi|229098039|ref|ZP_04228989.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-29]
 gi|229104126|ref|ZP_04234800.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-28]
 gi|229117057|ref|ZP_04246439.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-3]
 gi|228666461|gb|EEL21921.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-3]
 gi|228679333|gb|EEL33536.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-28]
 gi|228685476|gb|EEL39404.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-29]
 gi|228707739|gb|EEL59923.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-18]
          Length = 807

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 217/751 (28%), Positives = 381/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  S++ LL  I GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDQPNSSVDDLLAVIKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +DE+I  IR     +    +   RF  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSARFGFTEAQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E   L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEQEAAELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANIVSLDRDETII 592

Query: 604 --TAFVYDSTCK--LLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
             T        K  ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVIPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAIKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|299536169|ref|ZP_07049483.1| DNA topoisomerase IV subunit A [Lysinibacillus fusiformis ZC1]
 gi|298728444|gb|EFI69005.1| DNA topoisomerase IV subunit A [Lysinibacillus fusiformis ZC1]
          Length = 812

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 215/744 (28%), Positives = 376/744 (50%), Gaps = 26/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   EKFQDLPLEEVMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMFTEGNTHDKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R+ LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKARHMLIEMHGNNGSVDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ + +  V+F   ++++D EP V P++FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSAIAAEMLRDIGKKTVEFVPNFDDQDMEPTVLPARFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ +A L  +D P +++++L+  + GPDFPTGG I++  + I ++Y  GRG   VRA
Sbjct: 185 ALDEVLDAVLMRLDKPNVTVDELMTVMKGPDFPTGG-IIQGVDGIKKAYETGRGKIIVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +  G   IV+TE+PY V K+ L++KI E  + KR+  + +IRDES      V+ 
Sbjct: 244 QAVVEPIKGGKEQIVITELPYDVNKANLVKKIDEQRVDKRLEGIAEIRDESDRTGLRVVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + +    +++ +F  +D++  +     +    R P +M L  +L  ++AH++EV+  
Sbjct: 304 ELKKDVPGQGILQYLFKTTDLQVAYNF-NMIAIHNRRPTMMTLPLLLDAYIAHQKEVVTN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAI 431
           RS + +Q    R  I+ GL+ A   +DE+IA IR+ +  K     +  +F  TE Q +AI
Sbjct: 363 RSIYDLQKAKDRSHIVDGLIKALSILDEVIATIRSSNDKKDAKLNLQEKFDFTEVQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +  +++ E D L     K++ +L S  +    I  E+ ++K+ F++   
Sbjct: 423 VSLQLYRLTNTDITELRQEQDELDKLIAKLEGILQSEAKLVRVIKQELLDIKKRFTEP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R +  E    +       ++  E + V ++  G+I+   + S    +      K+ 
Sbjct: 481 ----RRSKIEQEIEEIKITLDVLVPSEEVVVTVTKDGYIKRTSTRSHAASNGQDFAMKDS 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAF 606
           D L    + +T   +LL +  G     P   L   R     + I  ++    ++ I+  +
Sbjct: 537 DYLLYEANLNTQHHLLLFTNRGNYIYQPVHELPDIRWKDLGQHISSIVPTGEDESIIAVY 596

Query: 607 VYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD- 659
            ++        +   +  G       ++  A TR  K    + V + + M     VT D 
Sbjct: 597 GFETFEQPNTYVFTATKDGQIKRSPLADY-AVTRYSKPIKTMNVKAGDAMIYASFVTDDV 655

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGR 717
            + +  +    + F ++++P    +  GV+  + KDG  +  V   +       +    R
Sbjct: 656 ELMLTTDTAYAIRFPMEELPVTGVKTGGVKGITLKDGEALVGVNVLQPDVTQYVVIVTQR 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVP 741
              +  N     +  R   G  V 
Sbjct: 716 GAVKKMNVAEVEVAGRAKRGLKVL 739



 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 73/260 (28%), Gaps = 14/260 (5%)

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +T++      + R  +    +++ +K     L          L     + N I   + E+
Sbjct: 509 VTKDGYIKRTSTRSHAASNGQDFAMKDSDYLLYEANLNTQHHLLLFTNRGNYIYQPVHEL 568

Query: 483 -KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
               +              E          +   +        +  G I+        ++
Sbjct: 569 PDIRWKDLGQHISSIVPTGEDESIIAVYGFETFEQPNTYVFTATKDGQIKRSPLADYAVT 628

Query: 542 ALHFKEGDSLKIALHAH------TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                       A  A       T D  L+L+TD           L   G        I 
Sbjct: 629 RYSKPIKTMNVKAGDAMIYASFVTDDVELMLTTDTAYAIRFPMEELPVTGVKTGGVKGIT 688

Query: 596 LNHNQDIVTAFVYDST--CKLLVVSSKGNAFI--VEESEIIANTRKGKTFLK-VSSEEK- 649
           L   + +V   V        +++V+ +G      V E E+    ++G   L  + +    
Sbjct: 689 LKDGEALVGVNVLQPDVTQYVVIVTQRGAVKKMNVAEVEVAGRAKRGLKVLTELKANPHR 748

Query: 650 -MKLVVKVTGDHVAVVGENR 668
            + +V    G+ V +  E  
Sbjct: 749 IVAVVQATDGEQVVIETEKG 768


>gi|299066934|emb|CBJ38129.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum CMR15]
          Length = 781

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 271/771 (35%), Positives = 413/771 (53%), Gaps = 49/771 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPREPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPRLMPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  AA+ALI +  ++   L +YI GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVATAAVALIRDDTLTSTDLTQYIPGPDFPGGGQIISSAADIAQIY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL   K     + +  
Sbjct: 241 ETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTP 300

Query: 304 E--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           E                        VR+V  PK++++       ++   + +E+   +N+
Sbjct: 301 EQLQLKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R   + RR+  R+  ++ R+ IL+G  +  L I+E+
Sbjct: 361 VMIGTDGRPRQKGLREILREWIDYRFATVTRRTRHRLGKVEDRIHILEGRQMVLLRIEEV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  D+PK  ++  F+L++ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D 
Sbjct: 421 IRIIRESDEPKAALIQAFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQAELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + F        RRT   E  RA      +  +  EP+TV+
Sbjct: 481 LLKSETMMRRRIVKEIETDAKQFGD-----DRRTLIQEERRAAA----EVKVVDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD-----GKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I       +   +L+ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTLASHAEQNVLISTQGGNGFLAKVGDMVGRQKGG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGDHV--AVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++      V  D    A +  N +LL+F + ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPAAVPEDAYGAACLSANGRLLLFPLSEVKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNR-------SENDLLGWLGKRGGVGS 738
             ++  + F        +  AG    +       +      + GKR   G 
Sbjct: 712 ETLAQALAFGPA--GFVVSGAGPRSGKATEQTFTTTRAQEPYAGKRARKGK 760


>gi|293376333|ref|ZP_06622570.1| DNA topoisomerase IV, A subunit [Turicibacter sanguinis PC909]
 gi|325843419|ref|ZP_08167977.1| DNA topoisomerase IV, A subunit [Turicibacter sp. HGF1]
 gi|292645022|gb|EFF63095.1| DNA topoisomerase IV, A subunit [Turicibacter sanguinis PC909]
 gi|325489341|gb|EGC91715.1| DNA topoisomerase IV, A subunit [Turicibacter sp. HGF1]
          Length = 801

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 213/743 (28%), Positives = 384/743 (51%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM + G  F  AF+K
Sbjct: 6   QRVQVMRLEDIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYKDGNTFEKAFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R PL+   GN G+IDGD AAA RYTEA
Sbjct: 66  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLREPLVQMHGNNGSIDGDPAAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ ++ L+L+ +D++ VDF   +++  +EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 126 RLSAISGLLLKDIDKNLVDFIPNFDDSMTEPTVLPAFFPNLLVNGATGISAGYATDIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +A +  +++ +  ++ LL +I GPDFPTG  I++  + I ++Y  G+G   VR+
Sbjct: 186 NLAEIIDAVIHRMNHKQCQLDDLLTFIKGPDFPTGA-IIQGIQEIKKAYATGKGRIIVRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IVVTEIPY+V K+ L++KI +L I K+I  + ++RDE+  +   ++ 
Sbjct: 245 KAEIETIRGGRDQIVVTEIPYEVNKANLVKKIDDLRIDKKIDGIMEVRDETDRNGLRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + +  ++++  +F  +D++  + +   V    + P +M L  ++  ++ H++EV+  
Sbjct: 305 ELKKDVKSEMVLNYLFKNTDLQVSYNI-NMVAIHNKRPVLMGLMDLIDAYIQHQKEVVTN 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           RS++ ++    R  I++GL+     +DE++ +IR        K  ++  F  +E Q +AI
Sbjct: 364 RSNYDLKRARERQHIVEGLIKMVSVLDEVVHMIRQSKDKSDAKKNLMVAFEFSERQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E + L     ++  +L+S  +    I  E+++V++ F     
Sbjct: 424 VMLQLYRLTNTDVTALQQENEELSKTILELTEILSSETKLLKVIQTELKQVRKDFKTE-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E  +      +  MI KE + V ++  G+++     S + +          
Sbjct: 482 ---RRSQIEEQIQEI-KIDETDMITKEDVIVAVTKDGYVKRTSIRSYNATKSEMPVMKDG 537

Query: 552 K---IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAF 606
                 L   T   +L+ +  G    LP   L   +     + +  L+ ++  + ++  F
Sbjct: 538 DELVSKLQVDTLQTLLMFTNRGSFIYLPVYKLPEFKWKDIGQHVSNLVTIDSEEKVIAVF 597

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               + S   L   ++ G        +  ++   +    + V  ++ +  VVK    + V
Sbjct: 598 AISDFKSEECLFFTTANGMIKKTRLGDFEVSRYNRAMMAMAVKEDDVLISVVKAPSPNDV 657

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSY 719
            +V +   LL FS ++I     +  GV+  +  KD  +  V+     + L  +   G   
Sbjct: 658 IMVTKQGYLLKFSDEEIAITGLKAMGVKGIAIGKDDQLIKVVLANANDELLLLTQRGNIK 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
                D+   L  R   GSL  K
Sbjct: 718 KLKVKDIA--LSSRNKKGSLGIK 738


>gi|170700643|ref|ZP_02891641.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria IOP40-10]
 gi|170134462|gb|EDT02792.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria IOP40-10]
          Length = 773

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 284/747 (38%), Positives = 421/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 SKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------------------AKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLLT 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILDEWVTFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIREADEPKAALMS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LT+ Q + IL +RLR L +LE+ +I+ EL+ L  EK K++ LL +       +  EI
Sbjct: 440 AFGLTDRQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 ETDAKQYGD-----DRRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  F      +LL+ SS G  F+ +  ++++  + GK F+ + S       + V   
Sbjct: 611 SHLMHYFAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDSGAVPLAPMPVLPN 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DDKETLVQALAIDPAGVVLIGTG 729

Query: 717 RSYNRSENDLLG-----WLGKRGGVGS 738
           R     +  L        +GKR   G 
Sbjct: 730 RGGKAQDETLSYAGLAPHIGKRARKGR 756


>gi|164510815|emb|CAK18892.1| topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 803

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 220/759 (28%), Positives = 402/759 (52%), Gaps = 27/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M   G  +   F
Sbjct: 1   MAEIIQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQLHPHGDISVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E IL+ +++D VDF   Y++ + EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A L  IDNP++++++L++YI GPDFPTGG IV+  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGG-IVQGIDGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+VTEIPY+V KS L++KI EL   K++  + ++RDE+      V
Sbjct: 240 RAKADIETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++   ++  ++  +D++  +     V      P++M +  I+  +L H+ EV+
Sbjct: 300 AVELKKDVNATSILNFLYKNTDLQVAYNF-NMVAITEGRPKLMGIKPIISSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+SF ++  + R+ I++GL+ A   +DE+IA+IRN       K  +V  +  TE Q +
Sbjct: 359 TRRTSFDLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E D L  +   +  +L +     + I  E+ E+K+ F + 
Sbjct: 419 AIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ ++  E + + ++  G+I+     S        +  K
Sbjct: 479 ------RLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV- 603
           E D +   +  +T D  ++ +  G+   +P   L   +     + +  ++ +  ++ +V 
Sbjct: 533 ERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVD 592

Query: 604 --TAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTGD- 659
             T   ++    ++  + +G       S   +  T K    +KV   + +  V+ V  D 
Sbjct: 593 CYTVSEFNDERAIITATRQGMIKKSLLSGFKSTRTTKPLVAMKVKESDALISVMLVPADA 652

Query: 660 ---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++      L + + ++P+   R  G++  + KD     V+   I    T + + 
Sbjct: 653 SSQLITLLTHRGMSLTYPMSELPDTGLRATGIKAINLKDEDHV-VLADHIQTEDTILIAT 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPR-SGKFLSS 753
            R   +     +    KR   G  + K   +   + +++
Sbjct: 712 QRGALKRIGFKVLQQAKRAQRGITLLKELKKQPHRVVAA 750


>gi|172061320|ref|YP_001808972.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria MC40-6]
 gi|171993837|gb|ACB64756.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MC40-6]
          Length = 773

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 283/747 (37%), Positives = 421/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 SKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------------------AKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLLT 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIREADEPKAALMS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LT+ Q + IL +RLR L +LE+ +I+ EL+ L  EK K++ LL +       +  EI
Sbjct: 440 AFGLTDRQAEDILEIRLRQLARLEKIKIEKELETLRDEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 ETDAKQYGD-----DRRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  F      +LL+ SS G  F+ +  ++++  + GK F+ + +       + V   
Sbjct: 611 SHLMHYFAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDTGAVPLAPMPVLPN 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DDKETLVQALAIDPAGVVLIGTG 729

Query: 717 RSYNRSENDLLG-----WLGKRGGVGS 738
           R     +  L        +GKR   G 
Sbjct: 730 RGGKAQDETLSYAGLAPHIGKRARKGR 756


>gi|187478866|ref|YP_786890.1| DNA topoisomerase IV subunit A [Bordetella avium 197N]
 gi|115423452|emb|CAJ49986.1| topoisomerase IV subunit A [Bordetella avium 197N]
          Length = 772

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 273/745 (36%), Positives = 406/745 (54%), Gaps = 41/745 (5%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
             E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM +MGL  GA   KSAR+VG+V+G
Sbjct: 27  YAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQDMGLTSGAKPVKSARVVGDVLG 86

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGDQ+ YD++VR+AQ F  RYPLI GQGNFG+ DGD+AAA RYTEAR+T +A L+L
Sbjct: 87  KYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTPIARLLL 146

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++E+ +A +
Sbjct: 147 EELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPSHNLREVAQACV 206

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           ALI NP++  E LL  I GPDF  GG I+     I   Y  GRG  + RARW  EE+ RG
Sbjct: 207 ALIRNPQLPDEDLLALIPGPDFAGGGQIITPAADIAHIYATGRGSLKARARWQFEEMARG 266

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRDES- 305
            W +VV E+P      +++E+I EL   K                      L+ +RDES 
Sbjct: 267 QWQLVVHELPPGTSCQKVLEEIEELTNPKVKAGKKSLTPDQQQSKAMMLALLDAVRDESG 326

Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
               VR+V  PK   +D D  +  +   + ME   P+N+  +     P+   L  +L EW
Sbjct: 327 KDAAVRLVFEPKTSRVDRDEFVNILLAQTSMECNVPVNLVCIGTDSRPRQKGLRSVLDEW 386

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           LA R E + RR+ +R+  +  R+ +L+G ++ YLN+DE+I  IR+ D+PKP ++ RF+LT
Sbjct: 387 LAFRSETVVRRTRYRLDKVLDRIHVLEGRMVVYLNVDEVIQTIRDSDEPKPALMDRFALT 446

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q + IL +RLR L +LE ++I+ EL +   E+ ++  LL++       +  EI    +
Sbjct: 447 ERQAEDILEMRLRQLARLEGFKIEQELADKREEQSRLQDLLDNPGSLKRLLIKEIEADAK 506

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
                     RRT      RA      +  +  EP+TVV+S  GW+R+ + H  D +   
Sbjct: 507 QHGDE-----RRTLIESAERAVL----ETKVLDEPVTVVVSRNGWLRARQGHGHDAAQFT 557

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           FK+GD L  A    TTD ++ +  +G+ YT+    L S RG G+ +  +IDL     IV 
Sbjct: 558 FKQGDDLYGAFECRTTDSLIAVGDNGRVYTVAVSALPSARGDGQPVTTMIDLEAGTRIVH 617

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVA 662
                +  + L+ +     F    S++ +  R GK F+ +   + +   V +      +A
Sbjct: 618 TIAAAADSRWLLATQSAYGFATRLSDMSSRQRAGKQFVTLDKGDVLLRPVPLFEGAVQLA 677

Query: 663 VVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           ++    KLL+F +D++  +   G+G  L         D        G   + +AG   N+
Sbjct: 678 LLSSKAKLLVFGLDELKSLSGGGRGTILMGLDANDRLDQAVPIAAGG---LRAAGIYRNK 734

Query: 722 SEND------LLGWLGKRGGVGSLV 740
              D      L  ++GKR   G ++
Sbjct: 735 PTEDILVGATLAPYVGKRARKGRVL 759


>gi|224500821|ref|ZP_03669170.1| DNA topoisomerase IV subunit A [Listeria monocytogenes Finland
           1988]
          Length = 819

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/764 (27%), Positives = 396/764 (51%), Gaps = 29/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTGGII    + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQG-IDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++  + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINK-KRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ +  +      R T  +   A+     + ++  E + V ++  G+++     S    +
Sbjct: 475 KKKYKTA------RRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDL 596
            + L  KE D        ++ D +LL ++ G     P   L   R          L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSAIAIQAFTEGKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLS 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGL 709
           V  + G + + +  +N   L +SI +IPE   R  GV+  + K    +   I     E  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
             + +  R   +           R   G L+ +    +  +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPHRFIG 752


>gi|115352446|ref|YP_774285.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria AMMD]
 gi|115282434|gb|ABI87951.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria AMMD]
          Length = 773

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 284/747 (38%), Positives = 422/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 SKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------------------AKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLLT 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RRS  R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILDEWVKFRQLTMTRRSRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIREADEPKAALMS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LT+ Q + IL +RLR L +LE+ +I+ EL+ L  EK K++ LL +       +  EI
Sbjct: 440 AFGLTDRQAEDILEIRLRQLARLEKIKIEKELETLRDEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 ETDAKQYGD-----DRRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  F      +LL+ SS G  F+ +  ++++  + GK F+ + +       + V   
Sbjct: 611 SHLMHYFAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDAGAVPLAPMPVLPN 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DDKETLVQALAIDPAGVVLIGTG 729

Query: 717 RSYNRSENDLLG-----WLGKRGGVGS 738
           R     +  L        +GKR   G 
Sbjct: 730 RGGKAQDETLSYAGLAPHIGKRARKGR 756


>gi|55820668|ref|YP_139110.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMG
           18311]
 gi|55822559|ref|YP_141000.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus
           CNRZ1066]
 gi|55736653|gb|AAV60295.1| DNA topoisomerase IV (subunit C) [Streptococcus thermophilus LMG
           18311]
 gi|55738544|gb|AAV62185.1| DNA topoisomerase IV (subunit C) [Streptococcus thermophilus
           CNRZ1066]
          Length = 839

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 205/747 (27%), Positives = 385/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++K
Sbjct: 23  SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRK 82

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 83  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 142

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 143 RLSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 202

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 203 NLAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVVVRS 261

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 262 RTEIEQLKGGKKQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAI 321

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  
Sbjct: 322 ELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYIAHRRDIIVA 380

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+I++IR  +     K  +   +  +E Q +AI
Sbjct: 381 RSKFDKEKAEKRLHIVEGLIRVISILDEVISLIRASENKSDAKENLKVSYDFSEEQAEAI 440

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E  NL  +   + +++   +  +N +  E+R++K+ F     
Sbjct: 441 VTLQLYRLTNTDIVALQNEEANLREQIATLAAIIGDERTLFNVMKRELRDIKKKFGND-- 498

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V I+  G+++     S +   +  +  ++ 
Sbjct: 499 ----RRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASKIEEVGKRDD 554

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L +   A TT  +L+ +        P   L   R           + + + +++++ A
Sbjct: 555 DDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNFSKDEEVLYA 614

Query: 606 FVYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
            + D   T   L  +  G     E  E         K   + K+  E + +  V  +  D
Sbjct: 615 EILDDFETGTYLATTKLGQIKRFERKEFTPWRTYKSKSVKYGKLKDESDVIVTVTPIQLD 674

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + ++ +    L F+ D++P +  +  GV+  + KD      +     +    +    R+
Sbjct: 675 DIMIITQKGYALRFNADEVPVVGAKAVGVKAINLKDDDKVQAVFVANTQSFYLL--TQRA 732

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +          KR G G  V +   
Sbjct: 733 SLKRVATSDIPRAKRAGRGLQVLRELK 759


>gi|290894159|ref|ZP_06557130.1| parC protein [Listeria monocytogenes FSL J2-071]
 gi|290556289|gb|EFD89832.1| parC protein [Listeria monocytogenes FSL J2-071]
          Length = 819

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/764 (27%), Positives = 396/764 (51%), Gaps = 29/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTGGII    + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQG-IDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++  + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINK-KRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ +  +      R T  +   A+     + ++  E + V ++  G+++     S    +
Sbjct: 475 KKKYKTA------RRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDL 596
            + L  KE D        ++ D +LL ++ G     P   L   R          L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLS 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGL 709
           V  + G + + +  +N   L +SI +IPE   R  GV+  + K    +   I     E  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
             + +  R   +           R   G L+ +    +  +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPHRFIG 752


>gi|312277995|gb|ADQ62652.1| DNA topoisomerase IV (Subunit C) [Streptococcus thermophilus ND03]
          Length = 818

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 205/747 (27%), Positives = 385/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEQLKGGKKQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  
Sbjct: 301 ELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYIAHRRDIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+I++IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVISILDEVISLIRASENKSDAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E  NL  +   + +++   +  +N +  E+R++K+ F     
Sbjct: 420 VTLQLYRLTNTDIVALQNEEANLREQIATLAAIIGDERTLFNVMKRELRDIKKKFGND-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V I+  G+++     S +   +  +  ++ 
Sbjct: 478 ----RRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASKIEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L +   A TT  +L+ +        P   L   R           + + + +++++ A
Sbjct: 534 DDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNFSKDEEVLYA 593

Query: 606 FVYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
            + D   T   L  +  G     E  E         K   + K+  E + +  V  +  D
Sbjct: 594 EILDDFETGTYLATTKLGQIKRFERKEFTPWRTYKSKSVKYGKLKDESDVIVTVTPIQLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + ++ +    L F+ D++P +  +  GV+  + KD      +     +    +    R+
Sbjct: 654 DIMIITQKGYALRFNADEVPVVGAKAVGVKAINLKDDDKVQAVFVANTQSFYLL--TQRA 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +          KR G G  V +   
Sbjct: 712 SLKRVATSDIPRAKRAGRGLQVLRELK 738


>gi|307703562|ref|ZP_07640504.1| DNA topoisomerase IV, A subunit [Streptococcus oralis ATCC 35037]
 gi|307622969|gb|EFO01964.1| DNA topoisomerase IV, A subunit [Streptococcus oralis ATCC 35037]
          Length = 814

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 210/737 (28%), Positives = 378/737 (51%), Gaps = 27/737 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +A + 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDATVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   ++KL+E++ GPDFPTGG I++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKVDKLMEFLPGPDFPTGG-IIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSTLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S     L  +  ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF------VYDSTCK 613
           T  +L+ +T G     P   L   R       L   + + +             +D    
Sbjct: 533 TQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAEVVDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
             V +  G    VE  E         K   + K+  E +++  V  +  D V ++ +N  
Sbjct: 593 YFVATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLDDVLLISQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K                  +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKATGVKAMNLKADDALQAAFICNTSSFYLL--TQRGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPKGFP 745
               R   G  V +   
Sbjct: 711 PATSRAKRGLQVLRELK 727


>gi|238021053|ref|ZP_04601479.1| hypothetical protein GCWU000324_00950 [Kingella oralis ATCC 51147]
 gi|237868033|gb|EEP69039.1| hypothetical protein GCWU000324_00950 [Kingella oralis ATCC 51147]
          Length = 765

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 268/752 (35%), Positives = 407/752 (54%), Gaps = 43/752 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E  YL YA+S +K RA+P ++DG KPV RRI+ AM +MGL  GA   KSAR+V
Sbjct: 14  LNLAQYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLTHGAKPVKSARVV 73

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +
Sbjct: 74  GEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPL 133

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L  +++  VDF   Y+    EP   P++ P +L NG SGIAVGMAT IPSHN+ E+
Sbjct: 134 AELLLSEINQGTVDFIPNYDGAFEEPESLPARLPMVLLNGASGIAVGMATEIPSHNLGEV 193

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +AA+AL+ NP ++   L  +I  PDF  G  I+   + I + Y  G+G  RVRAR+ VE
Sbjct: 194 AQAAVALLKNPALTTADLHHHIPAPDFAGGAHIITPAKDIAQIYETGKGSIRVRARYDVE 253

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDI 301
           ++ RG W +VV+E+P     ++++ +I E    K                      LE +
Sbjct: 254 KLARGQWRVVVSELPPNTSSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLLEKV 313

Query: 302 RDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES     VR+V  PK+  + P+  + ++   + ME    +N+ ++ +   P    L  
Sbjct: 314 RDESDGEHPVRLVFEPKSSRMQPETFINTLMAQTSMEGNVSVNLVMMGLDNRPAQKNLKT 373

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL+EWL +R   + RR   R+ A+++R+ IL G +IA+L+ID++I +IR  D+PKP +++
Sbjct: 374 ILQEWLDYRTATVTRRLQHRLDAVEKRIHILDGRMIAFLHIDQVIKVIREADEPKPELMA 433

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q + IL +RLR L +LE  +I+ EL+ L  E   + +LL    ++   I  EI
Sbjct: 434 AFQLTEIQAEDILEIRLRQLARLEGIKIERELNELREEAGSLKTLLGDENEKRKLIIKEI 493

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +   + F  +     RRT       A +          EPIT+++S +GW+R+   H VD
Sbjct: 494 QADAKQFGDA-----RRTLV----EAAERATLTQTTADEPITLILSQQGWLRARAGHGVD 544

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            + + FKEGD+L+  L   T   +++  + G++YTL A  +  GRG G  I  LI+L   
Sbjct: 545 AAQIAFKEGDALQQVLETRTVQPVVVWDSHGRSYTLDAAEIPKGRGDGVPIASLIELPSQ 604

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             +V      +    L+    G  FI +  ++    + GK  L +   E     V++  D
Sbjct: 605 ASVVALLAGAADDYYLLSGCHGYGFIAKLEDLFTRQKAGKAVLTLDDNETALPPVRIAND 664

Query: 660 H-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
                   + +   N++LL F + ++  M++G+G++L    DG    +      E  T  
Sbjct: 665 WLIAPDSRIVLASANKRLLAFPVSEMKIMAKGRGLQLIKLSDGDTLALASALTSEHYTLH 724

Query: 713 DSAGRSY----NRSENDLLGWLGKRGGVGSLV 740
               R           D+    GKR G G L+
Sbjct: 725 IIGKRGAIHQETLRIADIA---GKRAGKGKLL 753


>gi|73916854|gb|AAZ93295.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 213/747 (28%), Positives = 388/747 (51%), Gaps = 27/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHG  S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGAFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R           + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +  +        R   G  V +   
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLRELK 737


>gi|81428586|ref|YP_395586.1| DNA topoisomerase IV subunit A [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610228|emb|CAI55277.1| Topoisomerase IV, subunit A [Lactobacillus sakei subsp. sakei 23K]
          Length = 821

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 215/770 (27%), Positives = 388/770 (50%), Gaps = 34/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++      + ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM+  G
Sbjct: 1   MADE----AQKIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMAIDG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
             +   F+KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD 
Sbjct: 57  NTYDKGFRKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKLREPLIEMHGNNGSMDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++++A  +L+ +D+  VDF   +++   EP V P++FPNLL NG +GI+ 
Sbjct: 117 PAAMRYTEARLSKIASEMLKDIDKKTVDFVLNFDDTAEEPTVLPARFPNLLVNGATGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ E+ +  + LID+P+ ++EK++ ++ GPDFPTGGI+    + I ++Y  
Sbjct: 177 GYATEIPPHNLGEVTDGLVYLIDHPDATLEKMMTFVKGPDFPTGGILQ-GLDGIKKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  ++++      IV++EIPY+V K+++++KI EL + K++  + ++RDES
Sbjct: 236 GRGRVVVRAKTSIQQLHGNREQIVISEIPYEVNKAQMVKKIDELRVLKKVDGISEVRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    +  D   ++  +F  +D++  +  NM  +S    P+ + L  IL  +L
Sbjct: 296 DRMGLSVVIELKKQADSQGILNYLFKNTDLQITYNFNMVAISDM-QPKQVGLLEILHAYL 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            H+ EV+ RR+ + +Q    R+ I+ GL+ A   +D++I+ IR        K  +V+++ 
Sbjct: 355 KHQEEVVTRRTQYSLQKAQDRLHIVAGLVKALSILDQVISTIRASKNKKDAKTNLVAQYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            TE Q +AI++L+L  L   +   +++E   L        ++L + K+    I  E++ V
Sbjct: 415 FTEAQAEAIVSLQLYRLTNTDVTALEAEAAELKTAVAGYQAILGNPKELARVIKAELKSV 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +         R T  E             +  E + V +S+ G+++     S   S 
Sbjct: 475 VKAY------RNDRKTEIEAEIETLEIDTSVTVIDETVMVAVSHDGYLKRSSLRSYQASE 528

Query: 543 LHFKEGDSLKI---ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
                              T D+++L +  G     P   +     +  GE I   I L 
Sbjct: 529 GADGGLKEGDFAILQQPMQTLDQLMLFTNYGHLIQRPVHEIADLKWKEMGEHISQSIGLA 588

Query: 598 HNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEII-ANTRKGKT--FLKVSSEEKMK 651
            ++ I+ AF +         ++ ++ G        +++ + T + K   F+K+ +   + 
Sbjct: 589 ADEAIIAAFSFTPNEQSGYFVIGTTDGYIKQTAFQDLLPSRTYRSKAQDFIKLHAGANVT 648

Query: 652 LVVKVTGDH-----VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFK 704
            V  V+        +     N   L F+++++     +  GV+L   KDG  +++   F 
Sbjct: 649 NVYWVSETDAQQQAIFSASYNGYGLSFALNEVSVSGAKAGGVKLMDLKDGDHVANFTLFD 708

Query: 705 ICEG-LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             E          R   +        L  R   G L+ +   R    +++
Sbjct: 709 PAEKHAAVAIITQRGAFKRMFLSEVGLTSRARRGVLILRELKRDPHRVAA 758


>gi|296876575|ref|ZP_06900625.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432394|gb|EFH18191.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
          Length = 817

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 386/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IVVTEIPY++ K+ L++KI ++ ++ ++  + ++RDES  D   +  
Sbjct: 241 KTDIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVSNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + DL++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRR+++  
Sbjct: 301 ELKKDANADLILNYLFKYTDLQVNYNFNMVAID-NYTPRQVGIVPILSSYIAHRRDIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  +RR+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAERRLHIVEGLIRVISILDEVIALIRASENKSDAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E  NL  +   + +++   +  +N +  E+REVK++F     
Sbjct: 420 VTLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGDERTMFNLMKKELREVKKLFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  + +         ++I +E   V ++  G+I+     S +   L  +  ++ 
Sbjct: 478 ----RRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTSPRSFNASTLEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT  +LL +  G A   P   L   +       L   L + +        
Sbjct: 534 DELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKWKDIGEHLSQTLTNFEQEEEILFA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
           +             + +G     E  E+        K   + K+   E+++  V  V  +
Sbjct: 594 EVVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKIKDQEDRIVAVAPVVFE 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + ++ +N   L F+I+++P +  +  GV+  + KDG             +  +    R 
Sbjct: 654 DIMIITKNGYGLRFNIEEVPVVGAKAAGVKAINLKDGDQVAATFKSTTPSMYIL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +        +  R   G  V +   
Sbjct: 712 SLKRMLQDDIPVTSRAKRGLQVLRELK 738


>gi|164510812|emb|CAK18890.1| topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 803

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 219/759 (28%), Positives = 402/759 (52%), Gaps = 27/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M   G  +   F
Sbjct: 1   MAEIIQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E IL+ +++D VDF   Y++ + EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A L  IDNP++++++L++YI GPDFPTGG IV+  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGG-IVQGIDGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+VTEIPY+V KS L++KI EL   K++  + ++RDE+      V
Sbjct: 240 RAKADIETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++   ++  ++  +D++  +     V      P++M +  I+  +L H+ EV+
Sbjct: 300 AVELKKDVNATSILNFLYKNTDLQVAYNF-NMVAITEGRPKLMGIKPIISSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+SF ++  + R+ I++GL+ A   +DE+IA+IRN       K  +V  +  TE Q +
Sbjct: 359 TRRTSFDLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E D L  +   +  +L +     + I  E+ E+K+ F + 
Sbjct: 419 AIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ ++  E + + ++  G+I+     S        +  K
Sbjct: 479 ------RLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV- 603
           E D +   +  +T D  ++ +  G+   +P   L   +     + +  ++ +  ++ +V 
Sbjct: 533 ERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVD 592

Query: 604 --TAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTGD- 659
             T   ++    ++  + +G       S   +  T K    +KV   + +  V+ V  D 
Sbjct: 593 CYTVSEFNDERAIITATRQGMIKKSLLSGFKSTRTTKPLVAMKVKESDALISVMLVPADA 652

Query: 660 ---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++      L + + ++ +   R  G++  + KD     V+   I    T + + 
Sbjct: 653 SSQLITLLTHRGMSLTYPMSELLDTGLRATGIKAINLKDEDHV-VLADHIQTEDTILIAT 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPR-SGKFLSS 753
            R   +  +  +    KR   G  + K   +   + +++
Sbjct: 712 QRGALKRISFKVLQQAKRAQRGITLLKELKKQPHRVVAA 750


>gi|186476876|ref|YP_001858346.1| DNA topoisomerase IV subunit A [Burkholderia phymatum STM815]
 gi|184193335|gb|ACC71300.1| DNA topoisomerase IV, A subunit [Burkholderia phymatum STM815]
          Length = 773

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 267/764 (34%), Positives = 408/764 (53%), Gaps = 35/764 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +               ++L    E  YL YA+S +K RA+PD+ DG KPV RRI++A
Sbjct: 1   MDDNTPDLFTEPAAPEGDVLTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+
Sbjct: 61  MNEMGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+T +A+L+L  +D+  VDF   Y+    EP + P++ P +L NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKLLPARLPFVLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVG+AT IPSHN++E+  AA+A+I +P+I+  +L++ + GPDFP GG I+ S   I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVAMIRHPKITHAELMQLVPGPDFPGGGQIISSEAEIS 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG  +VRARW +E++ RG W +V+TE+P      +++E+I E    K     + 
Sbjct: 241 QAYETGRGSLKVRARWKIEDLARGQWQLVITELPPNTSGQKVLEEIEEQTNPKIKLGKKS 300

Query: 301 IRDE--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +  E                        VR+V  PK+  +D    + ++   + +E+   
Sbjct: 301 LTPEQLQTKQTLLGLLDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAT 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           LN+ ++     P+   +  +L EW+  R   + RRS  R+  ++ R+ IL+G +I +LNI
Sbjct: 361 LNLVMVGADGRPRQKGIGEMLHEWIGFRFTTVTRRSQHRLNKVNERIHILEGRMIVFLNI 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I IIR  ++PK  ++  F L++ Q + IL +RLR L +LE  +I+ EL  L  EK K
Sbjct: 421 DEVIRIIRESEEPKAALIEAFKLSDRQAEDILEIRLRQLARLEAIKIEKELSELRDEKAK 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ LL S       +  EI    + +        RRT   +  RA      +A +  EP+
Sbjct: 481 LEELLGSEPAMKRLLIKEIEADAKQYGD-----DRRTLIQQEKRATF----EARVVDEPV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV+S +GW+R+LK H +D +   FK GD L  A    T D ++   + G+ Y++    L
Sbjct: 532 TVVVSQKGWVRALKGHGLDPAGFTFKAGDGLYAAFQCRTPDMLIAWGSKGRVYSVAVSQL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG G  +  LI+L     ++  +   +   LL+ SS G  FI +  ++++  + GK 
Sbjct: 592 PGGRGDGVPVTSLIELESGTHLMHYYAASAEQALLLASSNGFGFIAKVGDMVSRVKAGKA 651

Query: 641 FLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
           F+ +         + +  D   VA +    +LL+F +D++  +   G+GV L +     +
Sbjct: 652 FMTIDEGATPLAPMPMLPDATQVACLSGGGRLLVFGLDEMKTLSGGGRGVILMALDPNEV 711

Query: 698 SDVICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGS 738
                     G+               S   L   +GKR   G 
Sbjct: 712 LKQALAISNAGVVLQGVYRNKPMEEELSGKALEPNVGKRARKGR 755


>gi|226223890|ref|YP_002757997.1| DNA gyrase-like protein (subunit A) [Listeria monocytogenes
           Clip81459]
 gi|254824652|ref|ZP_05229653.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-194]
 gi|255520560|ref|ZP_05387797.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-175]
 gi|300765324|ref|ZP_07075308.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL N1-017]
 gi|225876352|emb|CAS05061.1| Putative DNA gyrase-like protein (subunit A) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|293593890|gb|EFG01651.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-194]
 gi|300514007|gb|EFK41070.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL N1-017]
          Length = 819

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 210/764 (27%), Positives = 395/764 (51%), Gaps = 29/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTGGII    + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQG-IDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++  + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINK-KRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S    +
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDL 596
            + L  KE D        ++ D +LL ++ G     P   L   R          L  DL
Sbjct: 529 GAELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLS 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGL 709
           V  + G + + +  +N   L +SI +IPE   R  GV+  + K    +   I     E  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
             + +  R   +           R   G L+ +    +  +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPHRFIG 752


>gi|148984585|ref|ZP_01817853.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|148997069|ref|ZP_01824723.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           SP11-BS70]
 gi|307067452|ref|YP_003876418.1| type IIA topoisomerase subunit A [Streptococcus pneumoniae AP200]
 gi|147756769|gb|EDK63809.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           SP11-BS70]
 gi|147922976|gb|EDK74091.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|301799849|emb|CBW32423.1| topoisomerase IV subunit A [Streptococcus pneumoniae OXC141]
 gi|306408989|gb|ADM84416.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus pneumoniae AP200]
 gi|332204008|gb|EGJ18075.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA47368]
          Length = 811

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 208/737 (28%), Positives = 378/737 (51%), Gaps = 27/737 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S     L  +  ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF------VYDSTCK 613
           T  +L+ ++ G     P   L   R       L   + + +             +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
               +  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPKGFP 745
               R   G  V +   
Sbjct: 711 LATSRAKRGLQVLRELK 727


>gi|28198504|ref|NP_778818.1| DNA topoisomerase IV subunit A [Xylella fastidiosa Temecula1]
 gi|182681182|ref|YP_001829342.1| DNA topoisomerase IV subunit A [Xylella fastidiosa M23]
 gi|28056588|gb|AAO28467.1| topoisomerase IV subunit A [Xylella fastidiosa Temecula1]
 gi|182631292|gb|ACB92068.1| DNA topoisomerase IV, A subunit [Xylella fastidiosa M23]
          Length = 749

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 276/758 (36%), Positives = 430/758 (56%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P + DG KPV RRII+AM E+ 
Sbjct: 1   MTDLTRPFFHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKS R VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T ++E++L  + E  V++   ++    EP   PS+ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A + L+DNP  +I  L +YI GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPNDLQNLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE--DIR 302
            G G  R RA +  E+       +V+T +PYQV  S++IE+IA+ I +K++P L+   +R
Sbjct: 241 TGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVR 295

Query: 303 DESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES      RIVLFP+++ +D + LM  +F  +D+E    +N+NV+ +   PQV PL  +
Sbjct: 296 DESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL+ R + + RR  +R+Q ++ R+ +L+GLLIA+LN+D++I IIRNED+PKPV+++R
Sbjct: 356 LSEWLSFRSDTVTRRLKYRLQKVESRLHLLEGLLIAFLNLDKVIHIIRNEDEPKPVLIAR 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L++ Q + IL+ +LR L +LEE  I+SE D L  E+++I+ +L+S  Q    I  E+ 
Sbjct: 416 FGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERDEINVILDSDVQLKKLIKDELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
              + F  +      R       +A +A  +  ++  EP+TVV+S +GWIR+ K H VD 
Sbjct: 476 ADAKTFGDA------RRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHDVDP 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S + ++EGD L  A+   +T ++  L ++G+AY+     L S RG+GE +          
Sbjct: 530 SGMFYREGDRLLAAVRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEPLTGRFSPAPGA 589

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
                   D+    ++ SS G  FI     +    + GK  + ++   ++  +  +T   
Sbjct: 590 SFQAMASADNDKLFVLASSHGYGFITRFENLTGRNKAGKAMIHLTPGAQVMGLAPLTNVQ 649

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICEGLTWI 712
            D +  V     LL  +  ++PE+ +GKG +L            +  VI       L  +
Sbjct: 650 HDRIVAVTSAGNLLAIAASELPELDKGKGNKLIDIPKTKLATERLVAVIAVASSHTL-LL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            S  R+   S  DL  +L  RG  G L+P+G+ +    
Sbjct: 709 YSGERTMRLSFKDLEAYLDTRGSRGQLLPRGWHKIDTL 746


>gi|241760829|ref|ZP_04758920.1| DNA topoisomerase IV, A subunit [Neisseria flavescens SK114]
 gi|241318726|gb|EER55278.1| DNA topoisomerase IV, A subunit [Neisseria flavescens SK114]
          Length = 767

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 272/750 (36%), Positives = 409/750 (54%), Gaps = 43/750 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 20  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 79

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 80  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 139

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 140 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 199

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 200 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 259

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 260 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 319

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 320 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 379

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 380 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 439

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 440 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 499

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 500 DMKQFGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 550

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 551 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 610

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+  S G  FI + ++++   + GK  + V S E +   V V     
Sbjct: 611 PVAMLTGQPEQHYLLSGSGGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPVAVYASSL 670

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 V +   N +LL FSI ++  M +G+G++L S  +G   + I        T +  
Sbjct: 671 INPDCKVVLASSNHRLLAFSIGELKVMPKGRGLQLMSLAEGASLEHIMVTTSPEFTVVSV 730

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLV 740
             R           D+    GKRG  G ++
Sbjct: 731 GRRGAEHQEKLRIADID---GKRGKKGKVL 757


>gi|307704630|ref|ZP_07641532.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK597]
 gi|307621832|gb|EFO00867.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK597]
          Length = 814

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/737 (28%), Positives = 382/737 (51%), Gaps = 27/737 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKKTVPFSWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   ++KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKVDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVVTEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S     L  +  ++ D L       T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQAVKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ +T G     P   L   R           + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
               +  G    VE  E         K   + K+  E +++  V  +  D V ++ +N  
Sbjct: 593 YFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPIKLDDVFLISQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFICNTSSFYLL--TQRGSLKRVSIDEI 710

Query: 729 WLGKRGGVGSLVPKGFP 745
               R   G  V +   
Sbjct: 711 PATSRAKRGLQVLRELK 727


>gi|291570611|dbj|BAI92883.1| DNA gyrase A subunit [Arthrospira platensis NIES-39]
          Length = 875

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/819 (29%), Positives = 404/819 (49%), Gaps = 73/819 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++     +   V   SL   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G
Sbjct: 1   MAKQLNFLCGEVIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG++D D 
Sbjct: 61  LTPDRPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDP 120

Query: 126 AAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE R+  +    +L  V E  VDF   ++    EP V P++ P L+ NG+SGIA
Sbjct: 121 PAAMRYTETRLATIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALIDNP++  +KL++ I GPDFPTGG I+ + E I E+Y 
Sbjct: 181 VGMATNIPPHNLGEVVDGLIALIDNPDLCDQKLMQLIPGPDFPTGGEIIAT-EGIKEAYT 239

Query: 245 LGRGGFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            GRG   +R    +E+V      R    IVVTE+P+QV K+  IEK+A L+ A ++  + 
Sbjct: 240 SGRGSIVMRGVAKIEQVPTSGRKRTKNAIVVTELPFQVNKAGWIEKVAALVNAGKLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES  +   V+    R   P++++ +++  +D+ ++F      L     P+ + L  
Sbjct: 300 DIRDESDREGIRVVIELKREATPEVVLHNLYQHTDLMSKFGAIFLALVNS-QPRQLSLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL+E+L  R + L RR    ++  +RR  ++ GLL A   +DE+I I+RN        + 
Sbjct: 359 ILEEFLGFREQTLLRRYRSELEIAERREHLVGGLLKALSALDEVIDILRNAPDGSSAKMS 418

Query: 419 --SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
             +R   +  Q DAIL + LR L  LE  +++ E   L A+ +++  LL+   +    + 
Sbjct: 419 LETRLDFSTEQADAILAMPLRRLTGLEGKKLQEEATELAAQIQRLRRLLSERSELLKSLK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK---------------EPIT 521
            E+R +K  +S         +   E       + +                     E   
Sbjct: 479 KELRSLKRRYSDPRRTRIVSSESQESQSVSARSSKGVHPPSKATESKILRPQLPAVEETL 538

Query: 522 VVISNRGWIRSLKSHSVDLSALHFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           V ++ RG++R +  H++               D    +    T + +++++  GKAY L 
Sbjct: 539 VEMTLRGYVRRVTPHNLSRPQSREDITIEAIDDFPVTSYLTTTAETLVIINRMGKAYPLN 598

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQD----------IVTAF-------------------- 606
             ++ S       + L+  L+ +            IV AF                    
Sbjct: 599 VADIPSVSLKSRGVPLITLLSPSATKDASTRPQDLIVAAFLGAGLQSSPVRPKTDADQRE 658

Query: 607 -VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVV 664
             +     L+++S++G    +  ++ +  + +G T +K+   +++    +  TGD V + 
Sbjct: 659 RAFSDQTDLIMLSAEGKIKRLSGTDFMDLSARGITVMKLKDNDELSYANLAATGDQVVLA 718

Query: 665 GENRKLLI--FSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLT---WIDSAGR 717
               +LL    + DQIP M R  +G       K+  +   I       L     +  + +
Sbjct: 719 TSGGRLLRLDINADQIPVMGRTAQGSVATRLRKNEQLVGCITLSSTGELNNKFILLVSEQ 778

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK---FLSS 753
            Y +  +       +RGG+G+ + +   R+      +++
Sbjct: 779 GYFKRISLQSLQRSRRGGIGTQMLQFHSRNDACRGLVAT 817


>gi|148993667|ref|ZP_01823114.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|147927747|gb|EDK78770.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|332073184|gb|EGI83663.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA17570]
          Length = 811

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 210/737 (28%), Positives = 383/737 (51%), Gaps = 27/737 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S     L  +  ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L   R           + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
               +  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPKGFP 745
               R   G  V +   
Sbjct: 711 LATSRAKRGLQVLRELK 727


>gi|297156695|gb|ADI06407.1| DNA topoisomerase IV subunit A [Streptomyces bingchenggensis BCW-1]
          Length = 817

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 226/776 (29%), Positives = 376/776 (48%), Gaps = 39/776 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   TPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDS 125
                F K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++   D 
Sbjct: 68  RPERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DED VDF   Y+  + EP+  P+ +PNLL NG SGIAV
Sbjct: 128 PAAMRYTECRMASATSLMTESIDEDTVDFAPNYDGSEQEPLALPAAYPNLLVNGASGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ E+  AA  LI +P   ++ L+ ++ GPD PTGG IV     + ++Y  
Sbjct: 188 GMATNMAPHNLGEVIAAARHLIRHPGADLDALMRFVPGPDLPTGGRIV-GLGGVRDAYEK 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE+V +    +VVTE+P+ V   ++I KI +L+ +K++  + D++D +
Sbjct: 247 GRGTFKIRATVSVEDVTQRRKGLVVTELPFTVGPEKVISKIKDLVGSKKLQGISDVKDLT 306

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             +    ++       +P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +
Sbjct: 307 DRQHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421
           L HR +V+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ +       S   RF
Sbjct: 366 LDHRFDVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRVIRSSENAAEAKQSLIARF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q   IL+  LR L K +  +++SE D L AE E++  +L+S  +    ++ E+ +
Sbjct: 426 ELSDVQTQYILDTPLRRLTKFDRIELESERDRLKAEIEELTRILDSDAELRKLVSAELAQ 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--VD 539
           V + F        RRT   E + A   T     +  +P  V++S+ G +    +      
Sbjct: 486 VAKKFGTE-----RRTVLLESADA-PVTAVPLEVADDPCRVLLSSTGLLARTANGEPFPG 539

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--------LLSGRGHGEAIQ 591
                  + D +  A+ A     +  +++ G+   L   +               G  I 
Sbjct: 540 EEQAKRAKHDVIVSAVPATARGDLGAVTSTGRLLRLAVVDLPILPETAWAPNLAGGAPIA 599

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + L   ++++     D +   L + + +G    V   +  AN +     + +   +++
Sbjct: 600 EFLSLEDGEELICLTTLDESSPGLAIGTEQGVVKRV-VPDYPAN-KDELEVIGLKEGDRI 657

Query: 651 KLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKIC 706
              V  +   + +  + ++ +LL +   Q+    R   G+       G  +         
Sbjct: 658 VGAVELRTGEEDLVFITDDAQLLRYPASQVRPQGRPAGGMAGIKLGAGAKVISFTAVDPA 717

Query: 707 EGLTWIDSAGRSYN---------RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   AG             +           R   G    +        + +
Sbjct: 718 VDAVVFTIAGSHGTLDDSVQQSAKLTPFDQYPRKGRATGGVRCQRFLKGEDCLVLA 773


>gi|108763597|ref|YP_630704.1| type II DNA topoisomerase subunit A [Myxococcus xanthus DK 1622]
 gi|108467477|gb|ABF92662.1| type II DNA topoisomerase, A subunit [Myxococcus xanthus DK 1622]
          Length = 813

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 253/739 (34%), Positives = 403/739 (54%), Gaps = 26/739 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKSA 76
              SL      RY+ YALS I  RA+PD+RDG KPV RRI+  M  +  L   A ++KSA
Sbjct: 56  VPASLADEARRRYINYALSVITSRALPDVRDGLKPVQRRILFGMFHDHRLTHEAKYQKSA 115

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           ++VG V+G+ HPHGD S+Y++LVR+AQ F  RYPL+ G GNFG++DGD AAA RYTE R+
Sbjct: 116 KVVGSVMGQYHPHGDASIYEALVRMAQDFSLRYPLVDGHGNFGSLDGDGAAAMRYTECRL 175

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +L  + +  V FR TY+    EPVV P++ P LL NGT+GIAVGMAT+IP H++
Sbjct: 176 AMLSSELLTELGKKTVAFRPTYDGTLQEPVVIPARVPQLLMNGTTGIAVGMATNIPPHHL 235

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +ALI+NP++  + LL+++ GPDFPTGG I+  ++ + + Y  G+G  R+R  +
Sbjct: 236 GELVDALVALIENPQLLTKDLLKWVKGPDFPTGGQILNDKKELRDIYESGQGSIRIRGEY 295

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E++ RG   IV+T IPY V KS L+ K  +L+  +++PL+ D+RDES +DVRIVL  K
Sbjct: 296 KLEDLKRGGQQIVITSIPYTVNKSTLVAKFGDLVRERKLPLITDVRDESTKDVRIVLELK 355

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR------VPQVMPLDGILKEWLAHRRE 370
             + +P+L+M  ++  + ++T F +N+  L   +       P+ + L  IL  +L  R +
Sbjct: 356 KDA-NPELVMAYLYKQTPLQTNFGVNLTCLVPIKDKPELSTPERLNLRDILWYFLTFRFD 414

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQ 427
           V+ +R    +  + RRV IL+G    Y  +DE+I IIR  +  +        RF L E Q
Sbjct: 415 VVTKRFEHELGELLRRVHILEGFEKVYDALDEMIKIIRASEGKQDAARKLIARFKLDEAQ 474

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           VDAIL ++L  L +LE   ++ EL    AE ++I  +L    + W  +  E+ E+K  ++
Sbjct: 475 VDAILEMKLYKLARLEILVVEKELKEKRAEIKRIQGILKDKNKVWGTVRDELGEMKARYN 534

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                 +RRT        +     +A I  E   VVI+  GW++ ++    D S    +E
Sbjct: 535 D-----KRRTRIGGAGSEEMEFSAEAFIADEDAHVVITRDGWVKRVRE-VKDPSTTRLRE 588

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD++   L       ++L S  G AY     ++ +  G+GE +Q     +  + +V+A  
Sbjct: 589 GDAVMAVLAGSLKANLVLFSNFGTAYVTRFNDVPASTGYGEPVQKFFKFDDGERVVSALS 648

Query: 608 YDS----TCKLLVVSSKGNAFIVEES-EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
            D+      KL+ V+ +G          +  +TR G+ + K    +++  V  VT  D +
Sbjct: 649 LDARLPRPQKLVGVTKQGMGMRFLLEPHLEVSTRAGRRYAKTGEGDEIIGVQPVTDRDLL 708

Query: 662 AVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGG-ISDVICFKICEGLTWID-SAGRS 718
           AV+ E    L+  + ++ E+   GKGV +     G  + D +     +    ++    + 
Sbjct: 709 AVLTEKTSALVCKVAEVNELAGPGKGVTVIKVDGGDRVVDFLAVSPAQKDAKLEFETQKG 768

Query: 719 YNRSENDLLGWLGKRGGVG 737
                +     +  RGG G
Sbjct: 769 RKLHLSPAKYEVTGRGGKG 787


>gi|254932396|ref|ZP_05265755.1| DNA topoisomerase IV subunit A [Listeria monocytogenes HPB2262]
 gi|293583952|gb|EFF95984.1| DNA topoisomerase IV subunit A [Listeria monocytogenes HPB2262]
 gi|328475130|gb|EGF45914.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 220]
 gi|332311732|gb|EGJ24827.1| DNA topoisomerase 4 subunit A [Listeria monocytogenes str. Scott A]
          Length = 819

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 210/764 (27%), Positives = 395/764 (51%), Gaps = 29/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTGGII    + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQG-IDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++  + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINK-KRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S    +
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDL 596
            + L  KE D        ++ D +LL ++ G     P   L   R          L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLN 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGL 709
           V  + G + + +  +N   L +SI +IPE   R  GV+  + K    +   I     E  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
             + +  R   +           R   G L+ +    +  +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPHRFIG 752


>gi|46907514|ref|YP_013903.1| DNA topoisomerase IV subunit A [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|46880782|gb|AAT04080.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 819

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 210/764 (27%), Positives = 395/764 (51%), Gaps = 29/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTGGII    + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQG-IDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++  + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINK-KRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S    +
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDL 596
            + L  KE D        ++ D +LL ++ G     P   L   R          L  DL
Sbjct: 529 GAELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLN 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGL 709
           V  + G + + +  +N   L +SI +IPE   R  GV+  + K    +   I     E  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
             + +  R   +           R   G L+ +    +  +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPHRFIG 752


>gi|288818145|ref|YP_003432493.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6]
 gi|288787545|dbj|BAI69292.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6]
 gi|308751746|gb|ADO45229.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobacter thermophilus
           TK-6]
          Length = 761

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 234/732 (31%), Positives = 392/732 (53%), Gaps = 42/732 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   +++ Y+ YA+S I  RAIPD RDG KPV RRI++AM +MGL     F KS
Sbjct: 2   EITTVAIEEEVKQSYIDYAMSVIVGRAIPDARDGLKPVQRRILYAMYQMGLTPEKPFVKS 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG V+G  HPHGDQ+VYD+LVR+AQ F  RYPLISGQGNFG+IDGD  AA RY+EA+
Sbjct: 62  ARIVGTVLGYYHPHGDQAVYDALVRMAQDFNMRYPLISGQGNFGSIDGDPPAAMRYSEAK 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++VA  +L+ ++E+ VDF   ++    EP + PSKFPN+L NG+SGIAVG+ATSIP HN
Sbjct: 122 LSKVAIKMLEDIEENTVDFIPNFDGSTVEPALLPSKFPNMLCNGSSGIAVGLATSIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+C A + L  NP IS E++++ I GPDFPTGGI+  + + ++E Y  GRG  RVRA+
Sbjct: 182 LKEVCSALIELAKNPNISTEEIMKRIKGPDFPTGGIVE-NYQELIEYYHTGRGHVRVRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE++  G   IV+TEIPYQV K+ LI+++AEL+   ++  + +IRDES ++   ++  
Sbjct: 241 AHVEKLQGGREQIVITEIPYQVNKAELIKRMAELVREGKLKEISEIRDESDKEGIRIVIE 300

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R      ++E ++  + +   FP+N  VL     P+ + +  +L+E+L HR EV+ RR
Sbjct: 301 LKRDAQGQKVLEKLYKHTALRKNFPINFVVLID-NQPKQVGIKELLQEFLRHRLEVILRR 359

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAIL 432
           +   ++  + R+ I++GL  A  ++D++I  IR+          ++  ++L+E Q +A+L
Sbjct: 360 AKHHLKKAEDRLHIVEGLTKALEHLDKVIQDIRSSKDVPQAKEKLMKNYTLSERQANAVL 419

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +++ E   L+   E    L++S +++      E+ E+ + F      
Sbjct: 420 DMRLQRLTSLESSKLEEEKKQLIQSIEHYKKLISSEEERIKVFIQEMEEIVKEFPSP--- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RR+        +                          + S+   +     +E   + 
Sbjct: 477 --RRSFVLGFENEEV-------------------GQITVIIYSNGKIMPLEEMQEEGQVV 515

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDST 611
             L    ++ + ++S  G+ Y +     L G               ++ +V AFV   ++
Sbjct: 516 DVLDVPFSEGLFMVSNRGRVYWIAGSQALQGSKVSFK-------EADESVVGAFVRSQAS 568

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTGD-HVAVVGENRK 669
            ++++++ +G    +   +    T+ G + +K S E +++  V++   +  + ++    K
Sbjct: 569 HRIILITKRGYVKKIPIVDFEYKTQ-GMSIIKFSEEEDEVVKVLQSPEEGDILLLTRKGK 627

Query: 670 LLIFSIDQIPE-MSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           +L F I  IP      KGV      +G  + +    I +    +    +   +  N    
Sbjct: 628 MLRFPIRDIPPATVGSKGVIGIKL-EGDDTLISARAITDFPYLLLITQKGAVKKINAKDI 686

Query: 729 WLGKRGGVGSLV 740
               RG  G   
Sbjct: 687 PARGRGSKGMTA 698


>gi|229012771|ref|ZP_04169940.1| DNA topoisomerase 4 subunit A [Bacillus mycoides DSM 2048]
 gi|229134400|ref|ZP_04263213.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST196]
 gi|229168313|ref|ZP_04296038.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH621]
 gi|228615139|gb|EEK72239.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH621]
 gi|228649021|gb|EEL05043.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST196]
 gi|228748452|gb|EEL98308.1| DNA topoisomerase 4 subunit A [Bacillus mycoides DSM 2048]
          Length = 807

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 217/757 (28%), Positives = 386/757 (50%), Gaps = 24/757 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EP+V P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPIVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  S+E LL  I GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATIMRIDQPNSSVEDLLTVIKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL I K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRIDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +DE+I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAKFGFTEAQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E   L  +  ++ S+L S K+ +  I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEQEAAELSKKIIELQSILQSEKRLFQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
           +      R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 N------RRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKYFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  L+ L  ++ ++
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDESLI 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       L+F+ +++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATHGAYALVFNEEEVSPVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLS 752
           R   +           R   G ++ K   R+  + + 
Sbjct: 713 RGAVKRIKASEIEKSTRAKRGLVIFKELKRNPYRIVG 749


>gi|261379296|ref|ZP_05983869.1| DNA topoisomerase IV, A subunit [Neisseria subflava NJ9703]
 gi|284797734|gb|EFC53081.1| DNA topoisomerase IV, A subunit [Neisseria subflava NJ9703]
          Length = 767

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 272/750 (36%), Positives = 409/750 (54%), Gaps = 43/750 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 20  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 79

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 80  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 139

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EPV  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 140 LLLSEINQGTVDFVPNYDGAFDEPVHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 199

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 200 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 259

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 260 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 319

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 320 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 379

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 380 QEWLDFRVVTVTRRLKFRLSQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 439

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 440 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 499

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 500 DMKQFGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 550

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  +   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 551 QTAFKEGDRLKQTIEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 610

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+  S G  FI + +++I   + GK  + V S E +   V V     
Sbjct: 611 PVAMLTGQPEQHYLLSGSGGYGFITKLADMIGRVKAGKVIMTVDSGETVLPPVAVYASSL 670

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 V +   + +LL FSI ++  M +G+G++L S  +G   + I        T +  
Sbjct: 671 INPDCKVVLASSDHRLLAFSIGELKVMPKGRGLQLMSLAEGASLEHIMVTTSPEFTVVSV 730

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLV 740
             R           D+    GKRG  G ++
Sbjct: 731 GRRGAEHQEKLRIADID---GKRGKKGKVL 757


>gi|163941203|ref|YP_001646087.1| DNA topoisomerase IV subunit A [Bacillus weihenstephanensis KBAB4]
 gi|163863400|gb|ABY44459.1| DNA topoisomerase IV, A subunit [Bacillus weihenstephanensis KBAB4]
          Length = 807

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 218/757 (28%), Positives = 386/757 (50%), Gaps = 24/757 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EP+V P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPIVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  S+E LL  I GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATIMRIDQPNSSVEDLLTVIKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL I K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRIDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +DE+I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAKFGFTEAQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E   L  +  ++ S+L S K+ +  I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEQEAAELSKKIIELQSILQSEKRLFQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
           +      R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 N------RRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKYFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ ILL +  G    LP   +   R     + +  L+ L  ++ ++
Sbjct: 533 KEGDILLERFDTNTTETILLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDESLI 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       L+F+ +++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATHGAYALVFNEEEVSPVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLS 752
           R   +           R   G ++ K   R+  + + 
Sbjct: 713 RGAVKRIKASEIEKSTRAKRGLVIFKELKRNPYRIVG 749


>gi|329911521|ref|ZP_08275556.1| Topoisomerase IV subunit A [Oxalobacteraceae bacterium IMCC9480]
 gi|327545861|gb|EGF30973.1| Topoisomerase IV subunit A [Oxalobacteraceae bacterium IMCC9480]
          Length = 772

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/766 (36%), Positives = 422/766 (55%), Gaps = 42/766 (5%)

Query: 6   ISNSNTLVE-------ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           ++   TL +       +  + ++L    E  YL YA+S +K RA+PD+ DG KPV RRI+
Sbjct: 1   MTEQATLFDGDTPEPPDGAETLTLATFAERAYLDYAISVVKGRALPDVSDGQKPVQRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
            AM+++GL+  A  +KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI GQGNF
Sbjct: 61  FAMNQLGLNAAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQGFSLRYPLIDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+ DGD AAA RYTEAR+T ++ L+L  +D   VDF+  Y+    EP + P + P +L N
Sbjct: 121 GSRDGDGAAAMRYTEARLTPISSLLLDEIDLGTVDFQPNYDGSTEEPSLLPGRLPFVLLN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G SGIAVGMAT IPSHN++E+ +AA+ALI NP ++  +L+  I GPDFP+GG I+ S  +
Sbjct: 181 GASGIAVGMATEIPSHNLREVAQAAVALIRNPALTHAELMAIIPGPDFPSGGQIITSAAA 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK----- 293
           + E Y  GRG  +VRA W +EE+ RG W  VVTE+P+     +++E+I EL   K     
Sbjct: 241 LSEMYANGRGSLKVRALWKIEEMARGQWQAVVTELPHGTSAQKVLEEIEELTNPKIKLGK 300

Query: 294 -------------RIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
                         + LL+ +RDES  +  VR+V  PK+++ D       +   + +ET 
Sbjct: 301 KALSPDQLAQKQLMLSLLDAVRDESGREAPVRLVFEPKSKNQDQTEFTNMLLAQTSLETS 360

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             +N+ ++     P+   L  IL+EW+A R + + RRS FR++ ++ R+ IL+G     L
Sbjct: 361 ASINLVMIGGDGRPRQKGLGDILREWIAFRFDTVTRRSHFRLKKVEDRIHILEGRETILL 420

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           NIDE+I IIR  D+PKP ++  F L++ Q + IL +RLR L +LE  +I+ EL  L  EK
Sbjct: 421 NIDEVIRIIRESDEPKPALMGAFKLSDRQAEDILEIRLRQLARLEAIKIQQELAGLRTEK 480

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LLN+       I  EI   ++ F  +     RRT       A +    +  +  E
Sbjct: 481 STLEELLNNPGAMKKLIIKEIDADEKRFGDA-----RRTLI----EAAERATVEQKVIDE 531

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+TVVIS +GW+R+   H  D +   FK GD L       T D +L   ++G+ Y++   
Sbjct: 532 PVTVVISQKGWLRARTGHGHDPAQFAFKAGDDLYRTFECRTLDSLLAFGSNGRIYSIAVS 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +L   RG G  I  L++L     ++  F   +   +L+ S+ G  FI   +++I   + G
Sbjct: 592 SLPGARGDGAPISALVELASGSTVLHYFAGSADSTMLLASTAGYGFIARAADMIGRNKAG 651

Query: 639 KTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG 696
           K F+ + + +       +  +   VA +    +LL+F +D++  MS G+G+ L + +DG 
Sbjct: 652 KAFITLDAGDLPLPPQMLIPSASSVACLSGEGRLLVFGLDELKTMSGGRGMILMALEDGE 711

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSEND----LLGWLGKRGGVGS 738
                      G+           +  +     L    GKR   G 
Sbjct: 712 KLLAAQPVSQRGVLVSGIGRGGKTQEVSLSATGLALHTGKRARKGK 757


>gi|315640723|ref|ZP_07895825.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus italicus DSM
           15952]
 gi|315483478|gb|EFU73972.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus italicus DSM
           15952]
          Length = 817

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 213/756 (28%), Positives = 388/756 (51%), Gaps = 32/756 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM + G     +F+
Sbjct: 4   KHSIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMHQDGNTAEKSFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 64  KSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLRNVLIEMHGNNGSMDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++V+  +L+ +D++ V+F   +++ + EP V PS FPNLL NG++GI+ G AT IP+
Sbjct: 124 ARLSKVSSELLRDIDKETVEFVWNFDDTEKEPTVLPSMFPNLLVNGSTGISAGYATEIPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  + LID+P+ S+EKL+ +I GPDFPTGGI+    + I ++Y  G+G   +R
Sbjct: 184 HNLGEVIDGTIYLIDHPDASLEKLMTFIPGPDFPTGGILQ-GADEIKKAYETGKGKVILR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +EE+  G   IV++EIPY+V K+ L++++ E+ I K+I  + ++RDES      ++
Sbjct: 243 SKTRIEELKGGKQQIVISEIPYEVNKANLVKRMDEIRINKKIEGIAEVRDESDRTGLQIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + ++ + ++  +F  +D++  +  NM  +   R P+ + L  +L  ++AHR+ V+ 
Sbjct: 303 VELKKEVNAEGILNYLFKNTDLQVNYNFNMVAIDQMR-PKQVGLKQMLSSYVAHRQSVIL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RRS + ++    R  I+ GL+ A   +DE+I  IR     +    +     + T+ Q +A
Sbjct: 362 RRSEYDLKKALARQHIVDGLIKALSILDEVIKTIRKSKDKRDAKNNLILAHAFTQEQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +  Q++ E + LLA   ++  ++    + +  +  E+REVK+ +    
Sbjct: 422 IVTLQLYRLTNTDITQLQQEAEELLATIAELQKIIQDSTELFKVMKKELREVKKQYQSE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R T  E    +     + ++ +E + VV++  G+++     S    +      KE
Sbjct: 481 -----RLTVIEAEVTELTIDTEILVAQEDVMVVVTREGYVKRSSLRSYSASNNEEAGMKE 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL---IDLNHNQDIVT 604
            D +      +T D +LL++  G     P   L   R       L      L   ++I+T
Sbjct: 536 SDVVVYKGQLNTLDHLLLVTDKGNMIYRPVHELPDLRWKDVGEHLSQALTTLKIEENILT 595

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVT 657
              Y     T +LL+++  G     + SE         +   F+ +   E+K+  V+ + 
Sbjct: 596 VLPYKQLSTTQELLILTQAGMIKRTKLSEFTPWRTYKTRPLPFITLKQEEDKVISVMVIE 655

Query: 658 -----GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG--ISDVICFKICEGL 709
                   + +V      L +++  +P +  R  GV+  + K+    +   I        
Sbjct: 656 PQEIATQDIFMVSNRAYGLRYAVTDVPVVGPRAAGVKAMNLKEDDATVVQAILVHTDGDT 715

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +    R   +           R   G +V +   
Sbjct: 716 PVVIITQRGAAKRMLAQELPQTSRAQRGIMVLRELK 751


>gi|229031252|ref|ZP_04187258.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1271]
 gi|228730010|gb|EEL80984.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1271]
          Length = 807

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 215/751 (28%), Positives = 384/751 (51%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    + ++ + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + +RS + ++  + R  I++GL+ A   +D++I  IR     +    +   +F  TE Q 
Sbjct: 359 VTKRSQYELRKAENRQHIVEGLMKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEKEADELSTKIAELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  L+ L  ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDEMII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATYGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|168485803|ref|ZP_02710311.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|221231636|ref|YP_002510788.1| topoisomerase IV subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|183570981|gb|EDT91509.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|220674096|emb|CAR68614.1| topoisomerase IV subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|301793991|emb|CBW36389.1| topoisomerase IV subunit A [Streptococcus pneumoniae INV104]
 gi|332204860|gb|EGJ18925.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA47901]
          Length = 811

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/737 (28%), Positives = 384/737 (52%), Gaps = 27/737 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S     L  +  ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L   R           + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
              V+  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPKGFP 745
               R   G  V +   
Sbjct: 711 LATSRAKRGLQVLRELK 727


>gi|223932481|ref|ZP_03624483.1| DNA topoisomerase IV, A subunit [Streptococcus suis 89/1591]
 gi|223898935|gb|EEF65294.1| DNA topoisomerase IV, A subunit [Streptococcus suis 89/1591]
          Length = 805

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/746 (28%), Positives = 385/746 (51%), Gaps = 29/746 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +L 
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAGYLLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+ E+ +A + 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEVIDAVVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   +EKL+E++ GPDFPTG  I++  + I ++Y  G+G   VR+R  +E++  G 
Sbjct: 181 MIDHPTAKLEKLMEFLPGPDFPTGA-IIQGADEIKKAYETGKGRVVVRSRCEIEQLKAGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY+V K+ L++KI ++ +  ++P + ++RDES      +     +  D   +
Sbjct: 240 KQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIELKKDSDEQTI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  RS F  +  ++
Sbjct: 300 LNYLYKYTDLQINYNFNMVAIDNF-TPRQVGLQKILSSYIAHRREIIIARSKFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   +++E   L  + + + +++   +  +N +  E+REVK+ F         R +  + 
Sbjct: 419 DIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQFGNP------RLSELQD 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHT 559
                     ++I +E   V ++  G+I+     S +   L  +  ++ D L    +A T
Sbjct: 473 QAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGKRDDDQLIFLQNAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFVYD--STCKL 614
           T  +LL +  G     P   L   R           L++ + +++I+ A + +       
Sbjct: 533 TQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTSEEIIFAELVENFEEGTY 592

Query: 615 LVVSSKGNAFIVEESEIIA----NTRKGKTFLKVSS-EEKMKLVVKVTGDHVAVVGENRK 669
             V+  G    VE  E        ++  K   K+   E+ +  V  V  D + ++ E   
Sbjct: 593 FAVTQYGQIKRVERKEFTPWRTYKSKSTKYA-KLKDAEDVVITVSPVVLDDIMLMTEKGY 651

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + KDG +           +  +    R   +       
Sbjct: 652 ALRFNIEEVPIIGAKAAGVKAVNLKDGDVVVAAFISNTSSVYLL--TQRGSFKRMATEEI 709

Query: 729 WLGKRGGVGSLVPKGFP-RSGKFLSS 753
            +  R   G  V +    +  +  ++
Sbjct: 710 PVTSRAKRGLQVLRELKAKPHRVFAA 735


>gi|315658359|ref|ZP_07911231.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           lugdunensis M23590]
 gi|315496688|gb|EFU85011.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           lugdunensis M23590]
          Length = 800

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 220/755 (29%), Positives = 404/755 (53%), Gaps = 24/755 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q+AE +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLAEELLRDINKETVSFVSNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP IS+ +L++YI GPDFPTGG I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPNISVSQLMKYIQGPDFPTGG-IIQGVDGIKKAYETGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +VVTE+PY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVETEALRNGRQQLVVTEVPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   +F  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKEANSEAIKNYLFKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +DE+IA+IR        K  +V+ +  T+ Q +
Sbjct: 359 VNRTKFDLDHAEKRMHIVEGLMKALSILDEVIALIRESKNKRDAKDNLVATYGFTDAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  ++K+E   L    ++   +L++       I  E++++++ F   
Sbjct: 419 AIVMLQLYRLTNTDIVELKNEHAELSERIKEYRHILDNHDALLTVIKNELKDIRKRFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   A+    ++ M+  E + + ++ +G+I+   + S     +S +  K
Sbjct: 479 ------RLSAIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTSTRSFNASGVSEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD L      +T D IL+ +  G+   +P         +  G+ +  L+ +  ++ I+ 
Sbjct: 533 QGDRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKELGQHVSQLVAIEEDEYIIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    +      ++ +  G                K    +KV  ++++  V ++T D 
Sbjct: 593 VYNEKNFQQEAFYIMATRNGMIKKSHAGLFKTTRYTKPLVAMKVKPQDEIISVQRLTEDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++ +++ +   R  GV+  + K      V+   +  G T I +  R 
Sbjct: 653 IITVLTHKGMSLTYNTNELSDTGLRAAGVKSINLKVEDFV-VMTEVVEAGQTIIMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
             +  +  +  L KR   G  + K   ++  + ++
Sbjct: 712 AIKRIDFKVLQLAKRAQRGITLLKELKKNPHRIVA 746


>gi|270290231|ref|ZP_06196456.1| DNA topoisomerase IV, A subunit [Pediococcus acidilactici 7_4]
 gi|304384955|ref|ZP_07367301.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pediococcus acidilactici
           DSM 20284]
 gi|270281012|gb|EFA26845.1| DNA topoisomerase IV, A subunit [Pediococcus acidilactici 7_4]
 gi|304329149|gb|EFL96369.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pediococcus acidilactici
           DSM 20284]
          Length = 817

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 216/760 (28%), Positives = 397/760 (52%), Gaps = 33/760 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++    +  ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G
Sbjct: 1   MADN----QSKIQELALEDIMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNKDG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                AF+KSA+ VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G+ID D 
Sbjct: 57  NTHDKAFRKSAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKLRVPLIEMHGNNGSIDNDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++Q AE +LQ +D++ VD    +++ + EP V P++FPNLL NG +GI+ 
Sbjct: 117 PAAMRYTEARLSQAAEEMLQDIDKETVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ E+ +A L  I +P+ S+EKL+E++ GPDFPTGG IV+ R+ + ++Y+ 
Sbjct: 177 GYATEIPPHNIGEVIDAVLYTIKHPDPSLEKLMEFVKGPDFPTGG-IVQGRDGLKQAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VR+R  +E++      I +TEIPY+V K++L++KI E+ + K+I  + ++RDES
Sbjct: 236 GRGRVVVRSRTAIEQLRGSKQQIRITEIPYEVNKAQLVKKIDEIRVMKKIDGIAEVRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   +     + +D   ++  +   +D++  +  NM  ++  R P+ M L  I++ ++
Sbjct: 296 DREGLSIAIELKKDVDAQGVLNYLLKNTDLQVSYNFNMVAINKLR-PERMGLKPIIQAYV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
             ++EV+ +R+ F +Q  + R+ I+ GL+ A   +D++I  IR     K    +   RF 
Sbjct: 355 DFQKEVITKRTQFNLQKAEARLHIVDGLIKALSILDQVIKTIRGSKDKKDAKHNLVERFD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q ++I++L+L  L   +  ++K+E   L     + + +LN   +    ++ E+R+V
Sbjct: 415 FSEKQAESIVSLQLYRLTNTDVTELKTEAQQLNESIAEFNQILNDPAKLSRVLSAELRKV 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ ++        R +  +    +    +   + +E + V++S  G+++     S   SA
Sbjct: 475 KKQYATP------RLSEIQDEIEEIKIDRTVTVPEEQVMVLVSQAGYLKRSSLRSYKASA 528

Query: 543 LHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 D  +        T D +L+ +  G     P   +     +  GE +   I L  
Sbjct: 529 DEDGLKDGDQPVFKHELSTLDHLLMFTNKGNLIYRPVYEITEARWKDTGEHVSQTIGLAD 588

Query: 599 NQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMK 651
           ++ I+ A+   +       L+ +  G        ++       +K  T+ K+     K+ 
Sbjct: 589 DEIILKAYDVKNFKQPINFLIATDDGYIKQTALQDLKPGRTYRKKAITYAKLKKQGAKVV 648

Query: 652 LVVKVTGD----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKIC 706
            VV+V        + +  E+   L + + +IP +  R  GV+    +D  +++ +     
Sbjct: 649 NVVQVDPKTAPATILLASEHGYGLRYDLVEIPTVGPRAAGVKSMDLRDDQVANFVLVNDE 708

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           + +  I +  R   +        +  R   G  + +   +
Sbjct: 709 DQIGLITN--RGSFKRMKVSEISVTSRARRGVQILRELKK 746


>gi|21282971|ref|NP_646059.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MW2]
 gi|38604913|sp|Q8NWU8|PARC_STAAW RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|21204410|dbj|BAB95107.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MW2]
          Length = 800

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 213/756 (28%), Positives = 396/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+          ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKCDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|19745974|ref|NP_607110.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS8232]
 gi|73921621|sp|Q8P1B3|PARC_STRP8 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|19748135|gb|AAL97609.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes MGAS8232]
          Length = 819

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 383/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  
Sbjct: 301 ELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIE 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+++     S +   L  +  ++ 
Sbjct: 478 ----RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT+ +LL +T G     P   L   R       L   +++          
Sbjct: 534 DELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           D          + V+  G     +  E+        K   ++K+  + +++  +  V  +
Sbjct: 594 DIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V +N   L FS  ++P    +  GV+  + K+                 +    R 
Sbjct: 654 DLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDDSLASAFAVTSNSFFVL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 SLKRMAVDDIPQTSRANRGLLVLRELK 738


>gi|289550858|ref|YP_003471762.1| Topoisomerase IV subunit A [Staphylococcus lugdunensis HKU09-01]
 gi|289180390|gb|ADC87635.1| Topoisomerase IV subunit A [Staphylococcus lugdunensis HKU09-01]
          Length = 800

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 220/755 (29%), Positives = 404/755 (53%), Gaps = 24/755 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q+AE +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLAEELLRDINKETVSFVSNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP IS+ +L++YI GPDFPTGG I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPNISVSQLMKYIQGPDFPTGG-IIQGVDGIKKAYETGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +VVTE+PY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVETEALRNGRQQLVVTEVPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   +F  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKEANSEAIKNYLFKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +DE+IA+IR        K  +V+ +  T+ Q +
Sbjct: 359 VNRTKFDLDHAEKRMHIVEGLMKALSILDEVIALIRESKNKRDAKDNLVATYGFTDAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  ++K+E   L    ++   +L++       I  E++++++ F   
Sbjct: 419 AIVMLQLYRLTNTDIVELKNEHAELSERIKEYRHILDNHDALLTVIKNELKDIRKRFKTE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   A+    ++ M+  E + + ++ +G+I+   + S     +S +  K
Sbjct: 479 ------RLSSIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTSTRSFNASGVSEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD L      +T D IL+ +  G+   +P         +  G+ +  L+ +  ++ I+ 
Sbjct: 533 QGDRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKELGQHVSQLVAIEEDEYIIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    +      ++ +  G                K    +KV  ++++  V ++T D 
Sbjct: 593 VYNEKNFQQEAFYIMATRNGMIKKSHAGLFKTTRYTKPLVAMKVKPQDEIISVQRLTEDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++ +++ +   R  GV+  + K      V+   +  G T I +  R 
Sbjct: 653 IITVLTHKGMSLTYNTNELSDTGLRAAGVKSINLKVEDFV-VMTEVVEAGQTIIMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
             +  +  +  L KR   G  + K   ++  + ++
Sbjct: 712 AMKRIDFKVLQLAKRAQRGITLLKELKKNPHRIVA 746


>gi|323441139|gb|EGA98846.1| DNA topoisomerase IV subunit A [Staphylococcus aureus O11]
 gi|323444007|gb|EGB01618.1| DNA topoisomerase IV subunit A [Staphylococcus aureus O46]
          Length = 800

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 214/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEDVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|254432446|ref|ZP_05046149.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Cyanobium
           sp. PCC 7001]
 gi|197626899|gb|EDY39458.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Cyanobium
           sp. PCC 7001]
          Length = 834

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 225/775 (29%), Positives = 368/775 (47%), Gaps = 47/775 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     ++
Sbjct: 17  DGRIQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYR 76

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RYTE
Sbjct: 77  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTE 136

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +A   +L  +  D VDF   ++    EP V P++ P LL NG +GIAVGMAT+IP
Sbjct: 137 TRLAPIAHEGLLDEIGNDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATNIP 196

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A +ALI  P++S EKL   + GPDFPTGG ++ S   + ++YRLGRG   +
Sbjct: 197 PHNLGEVVDAMIALIRKPDLSDEKLFALVPGPDFPTGGEVLLS-SGVRDTYRLGRGSIPM 255

Query: 253 RARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R    +EEV  G        +V+TE+PYQ+ K+  IEK+AE +   +I  + DIRDES  
Sbjct: 256 RGVAHIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDR 315

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V+    R  + D ++  +   + +++ F   +  L     P  + L  +L+E+L +
Sbjct: 316 EGMRVVVELRRDANADTVLAELQRRTALQSNFGAILLALV-NGQPVQLSLRRLLQEFLDY 374

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLT 424
           R   L RR+   ++  + R+E+++GL+ A   + E+IA+I               R  L+
Sbjct: 375 RELTLIRRTRHALRRCEDRLEVVEGLIKALDALQEVIAMITAAADAASARASLQVRLDLS 434

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DA+L + LR L  LE+  ++ E + L  E+ ++  LL+        +  E R +K+
Sbjct: 435 ERQADAVLAMPLRRLTGLEQESLRQESEELRTERTRLRHLLDDRDSLLEAMVAEFRALKK 494

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK-------------EPITVVISNRGWIR 531
            +        RRT   E      A    A                     V+I     ++
Sbjct: 495 RYGTP-----RRTRLVEGGDDLVAQRAAAARPNAELQRQQALEALASDSRVLIQADRAVK 549

Query: 532 SLKSHSVDLSALHFKEGDSLK-----IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            +    +    L              + L   +  ++L  +TDG+   L        +  
Sbjct: 550 IVTPQVLGRLHLEEPAPLGEHPAPAQLLLTVASQPQVLAFTTDGRVAVLR-WEFAGQQPG 608

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                L   L     ++              + ++SS G    +   ++   + +  T L
Sbjct: 609 PLERFLPDSLE-GASVMQVLPLQEGSDPHLSIGLLSSDGRFKRLPLDDLQDLSGRAATVL 667

Query: 643 KVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQS-YKDGGI 697
           K+     ++ VV   +G  + V     ++L    + +Q+P M R  +G  L     D  I
Sbjct: 668 KLKEGVTLQRVVPCRSGAELVVASSTGRMLRLEANEEQVPLMGRTAQGPVLMRLLPDEQI 727

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               C       + + ++ +   +          +RG +G +  +   R    ++
Sbjct: 728 VGAACV--PASGSVLLASRQGQVKKLAVESLRRCERGDLGLIGIRFSQRGDALVA 780


>gi|49486198|ref|YP_043419.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|81649352|sp|Q6G9K4|PARC_STAAS RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|49244641|emb|CAG43072.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 800

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 214/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VVTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|170691863|ref|ZP_02883027.1| DNA topoisomerase IV, A subunit [Burkholderia graminis C4D1M]
 gi|170143147|gb|EDT11311.1| DNA topoisomerase IV, A subunit [Burkholderia graminis C4D1M]
          Length = 774

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 284/769 (36%), Positives = 427/769 (55%), Gaps = 43/769 (5%)

Query: 1   MGVDNISN---SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  DN  +        E +   ++L    E  YL YA+S +K RA+PD+ DG KPV RRI
Sbjct: 1   MDDDNTLDLFTEPPPPEGDF--LTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRI 58

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + AM++MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGN
Sbjct: 59  LFAMNDMGLSDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGN 118

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+ DGD AAA RYTEAR+T +A+L+L  +D+  VDF   Y+ E  EP + P++ P +L 
Sbjct: 119 FGSRDGDGAAAMRYTEARLTPIAKLLLAEIDQGTVDFMKNYDGEFDEPRLLPARLPFVLL 178

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG SGIAVG+AT IPSHN++E+  A +A+I NP+I+  +L+E++ GPDFP GG I+ S  
Sbjct: 179 NGASGIAVGLATEIPSHNLREVAAATVAMIRNPKITHAELMEHVPGPDFPGGGQIISSEA 238

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I  +Y  GRG  +VRARW +E++ RG W +V+TE+P      +++E+I E    K    
Sbjct: 239 EISAAYETGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLG 298

Query: 298 ------------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
                             L+ +RDES     VR+V  PK+  +D    + ++   + +E+
Sbjct: 299 KKALTPEQLQGKQTMLGLLDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLES 358

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
              LNM ++     P+   L  IL EW+A R   + RR+  R+  +D R+ IL+G +I +
Sbjct: 359 NASLNMVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLTKVDDRIHILEGRMIVF 418

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
           LNIDE+I IIR  D+PK  +++ F L++ Q + IL +RLR L +LE+ +I+ EL  L  E
Sbjct: 419 LNIDEVIRIIRESDEPKVALMAAFGLSDRQAEDILEIRLRQLARLEKIKIEKELAELRDE 478

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           K K++ LL S       +  E+    + +        RRT   +  RA      +A +  
Sbjct: 479 KAKLEELLGSESAMKRLLIKEVEADAKQYGDE-----RRTLIQQEKRATY----EARVVD 529

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           EP+TVV+S +GW+R+LK H +D +   FK GDSL  A    T D ++   ++G+ Y++  
Sbjct: 530 EPVTVVVSQKGWVRALKGHGLDTAGFTFKAGDSLYAAFQCRTPDTLIAWGSNGRVYSVAV 589

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            +L  GRG G  +  LI++     ++  +   +   LL+ SS G  FI +  ++++  + 
Sbjct: 590 ASLPGGRGDGVPVTSLIEMESGSHLMHYYAASADQALLLASSNGFGFIAKVGDMVSRVKA 649

Query: 638 GKTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           GK+F+ + +       + +  D   VA +    +LL+F ID++  +   G+GV L +  D
Sbjct: 650 GKSFMTIDAGAAPLAPMPMLPDATQVACLSSAGRLLVFGIDEMKTLSGGGRGVTLMAL-D 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSEN-----DLLGWLGKRGGVGS 738
              + V    I      +  A R     E       L   +GKR   G 
Sbjct: 709 DKETLVQALAINAAGVMLIGARRGGRLDEEKLSGAALAAHVGKRARKGR 757


>gi|148988274|ref|ZP_01819721.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP6-BS73]
 gi|147925955|gb|EDK77029.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP6-BS73]
          Length = 811

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 210/737 (28%), Positives = 382/737 (51%), Gaps = 27/737 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S     L  +  ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L   R           + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
               +  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPKGFP 745
               R   G  V +   
Sbjct: 711 LATSRAKRGLQVLRELK 727


>gi|282916616|ref|ZP_06324374.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770422|ref|ZP_06343314.1| DNA topoisomerase 4 subunit A [Staphylococcus aureus subsp. aureus
           H19]
 gi|282319103|gb|EFB49455.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460569|gb|EFC07659.1| DNA topoisomerase 4 subunit A [Staphylococcus aureus subsp. aureus
           H19]
 gi|302332971|gb|ADL23164.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 800

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 213/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|262052165|ref|ZP_06024372.1| DNA topoisomerase IV subunit A [Staphylococcus aureus 930918-3]
 gi|259159909|gb|EEW44946.1| DNA topoisomerase IV subunit A [Staphylococcus aureus 930918-3]
          Length = 800

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 214/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|71274853|ref|ZP_00651141.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Dixon]
 gi|170729899|ref|YP_001775332.1| DNA topoisomerase IV subunit A [Xylella fastidiosa M12]
 gi|71164585|gb|EAO14299.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Dixon]
 gi|167964692|gb|ACA11702.1| topoisomerase IV subunit A [Xylella fastidiosa M12]
          Length = 749

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 274/758 (36%), Positives = 429/758 (56%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P + DG KPV RRII+AM E+ 
Sbjct: 1   MTDLTRPFFHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKS R VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T ++E++L  + E  V++   ++    EP   PS+ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A + L+DNP  +I  L +YI GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEITSALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQNLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE--DIR 302
            G G  R RA +  E+       +V+T +PYQV  S++IE+IA+ I +K++P L+   +R
Sbjct: 241 TGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVR 295

Query: 303 DESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES      RIVLFP+++ +D + LM  +F  +D+E    +N+NV+ +   PQV PL  +
Sbjct: 296 DESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL+ R + + RR  +R+Q ++ R+ +L+GLLI +LN+D++I IIRNED+PKPV+++R
Sbjct: 356 LSEWLSFRSDTVTRRLKYRLQKVENRLHLLEGLLITFLNLDKVIHIIRNEDEPKPVLIAR 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L++ Q + IL+ +LR L +LEE  I+SE D L  E+++I+ +L+S  Q    I  E+ 
Sbjct: 416 FGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERDEINVILDSDVQLKKLIKDELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
              + F  +      R       +A +A  +  ++  EP+TVV+S +GWIR+ K H VD 
Sbjct: 476 ADAKTFGDA------RRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHDVDP 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S + ++EGD L  A+   +T ++  L ++G+AY+     L S RG+GE +          
Sbjct: 530 SGMSYREGDRLLAAVRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEPLTGRFSPAPGA 589

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
                   D+    ++ SS G  FI     +    + GK  + ++   ++  +  +T   
Sbjct: 590 SFQAMASADNDKLFVLASSHGYGFITRFENLTGRNKAGKAMIHLTPGAQVMGLAPLTDVQ 649

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICEGLTWI 712
            D +  V     LL  +  ++PE+ +GKG +L            +  VI       L  +
Sbjct: 650 HDRIVAVTSAGNLLAIAASELPELDKGKGNKLIDIPKTKLATERLVAVIAVASSHTL-LL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            S  R+ + S  DL  +L  RG  G L+P+ + +    
Sbjct: 709 YSGERTMHLSFKDLEAYLDTRGSRGQLLPRSWHKIDTL 746


>gi|71910525|ref|YP_282075.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS5005]
 gi|161485747|ref|NP_664429.2| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS315]
 gi|73921619|sp|Q8K7U6|PARC_STRP3 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|71853307|gb|AAZ51330.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS5005]
          Length = 819

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 383/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  
Sbjct: 301 ELKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIE 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+++     S +   L  +  ++ 
Sbjct: 478 ----RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT+ +LL +T G     P   L   R       L   +++          
Sbjct: 534 DELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           D          + V+  G     +  E+        K   ++K+  + +++  +  V  +
Sbjct: 594 DIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V +N   L FS  ++P    +  GV+  + K+                 +    R 
Sbjct: 654 DLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDDSLASAFAVTSNSFFVL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 SLKRMAVDDIPQTSRANRGLLVLRELK 738


>gi|149007201|ref|ZP_01830865.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP18-BS74]
 gi|147761239|gb|EDK68206.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP18-BS74]
          Length = 811

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 211/737 (28%), Positives = 383/737 (51%), Gaps = 27/737 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREFLVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRTSENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S     L  +  ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L   R           + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
              V+  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPKGFP 745
               R   G  V +   
Sbjct: 711 LATSRAKRGLQVLRELK 727


>gi|298694655|gb|ADI97877.1| Topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 800

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 213/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|268316831|ref|YP_003290550.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
 gi|262334365|gb|ACY48162.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
          Length = 775

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 262/775 (33%), Positives = 406/775 (52%), Gaps = 58/775 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE-MGLDFGAAFKKS 75
           V+ + L     ERYL +ALS I  RA+PD+RDG KPV RRI++AM + + L   A ++KS
Sbjct: 4   VEVIPLHETTRERYLNFALSVITSRALPDIRDGLKPVQRRILYAMFQHLRLYPDARYRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVGEV+GK HPHGD ++Y+++VR+AQ F  RYPL+ G GNFG+IDGD+AAA RYTEAR
Sbjct: 64  ATIVGEVMGKYHPHGDAAIYEAMVRMAQDFSLRYPLVDGHGNFGSIDGDAAAAMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  +A  +L+ +    V  R  ++    EPVV P++FPNLL NG SGIAVGMAT+IP HN
Sbjct: 124 LRPLAMQLLEELRRQTVPMRPNFDGTLFEPVVLPARFPNLLVNGASGIAVGMATNIPPHN 183

Query: 196 VQEICEAALALIDNPEISIEKL-LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + E+ +A + LID P   +E +   +I GPDFPTGG ++ +RE ++E YR G G   +R 
Sbjct: 184 LGEVIDALIYLIDVPNAPLETILERFIQGPDFPTGGRVLNTREELLEIYRTGEGPIELRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            + +E    G   IV+T IPY + K+ L+EKIAE I A ++P L D+RDES ++VRIVL 
Sbjct: 244 EYKLE----GKTRIVITSIPYGIAKADLVEKIAEHIAAGKVPQLSDVRDESTDEVRIVLE 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP-----QVMPLDGILKEWLAHRR 369
              R  DP+  M  +F  + ++TRF +N+  L     P     + + L  +L+ +L  R 
Sbjct: 300 -LRRGADPEAAMAYLFRHTPLQTRFHVNLTCLVPTANPEVAAPRKVDLMTMLRAFLEFRM 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           EV+ RR  + ++ ++RR+ IL+G    +        II   R++      ++ RF L + 
Sbjct: 359 EVVVRRLRYDLEQLERRIHILRGFEKIFGALDEAIRIIRAARDKADAAQRLMHRFQLDDV 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL  +L  L +LE   I+ EL+    +  ++ +LL     +W  I  E++ +K+ F
Sbjct: 419 QADAILETKLYKLSRLEIEAIRQELEEKERQAAELRALLADEAARWGLIREELKAIKKQF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +      R T            Q+A I  E + V+++  GW++  +S++ D+ ++  +
Sbjct: 479 ADA------RRTVIAGPDEGFEYNQEAYIVDEDVYVIVTRDGWVKRQRSYT-DVQSIRVR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD++   L   T   +   +  G+ YT    +L S  G+G+ +Q L D +  + +V   
Sbjct: 532 EGDTVGWVLPGSTRATVGFFTNYGRCYTTRIDSLPSTTGYGDPVQKLFDFSDRERVVGVV 591

Query: 607 VYDSTC-------------------------KLLVVSSKGNAFIVEESEI-IANTRKGKT 640
           V+D                             ++ V+ KG    +        +T+ G+ 
Sbjct: 592 VFDERALPRPVPEPEVEPALFENGEQEAPRVHVVAVTRKGQTLRIPIDGFREPSTKNGRL 651

Query: 641 FLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPE-MSRGKGVRLQSYKDGGIS 698
           F+++   +++  V    GD  V +      +LIF + QIP   S  KGV       G   
Sbjct: 652 FMRLEKGDEVLGVEVAAGDENVCLASREGYVLIFPVHQIPPVKSAAKGVIAMRLGRGDEV 711

Query: 699 DVICFKIC--EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                     EGL    S GR            + +RG  G  +     R G+ +
Sbjct: 712 LGFTLASAAREGLEVETSRGRREIVRTTKFE--VSRRGNRGRQII----RRGQLV 760


>gi|15926935|ref|NP_374468.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           N315]
 gi|258434733|ref|ZP_05688807.1| topoisomerase IV subunit A [Staphylococcus aureus A9299]
 gi|258444691|ref|ZP_05693020.1| topoisomerase IV subunit A [Staphylococcus aureus A8115]
 gi|282892846|ref|ZP_06301081.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A8117]
 gi|296275474|ref|ZP_06857981.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MR1]
 gi|20178001|sp|Q93KF4|PARC_STAAN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|13701152|dbj|BAB42447.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           N315]
 gi|257849094|gb|EEV73076.1| topoisomerase IV subunit A [Staphylococcus aureus A9299]
 gi|257850184|gb|EEV74137.1| topoisomerase IV subunit A [Staphylococcus aureus A8115]
 gi|282764843|gb|EFC04968.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A8117]
          Length = 800

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  F  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|306827497|ref|ZP_07460780.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus pyogenes
           ATCC 10782]
 gi|304430295|gb|EFM33321.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus pyogenes
           ATCC 10782]
          Length = 819

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 383/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  
Sbjct: 301 ELKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIE 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+++     S +   L  +  ++ 
Sbjct: 478 ----RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT+ +LL +T G     P   L   R       L   +++          
Sbjct: 534 DELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           D          + V+  G     +  E+        K   ++K+  + +++  +  V  +
Sbjct: 594 DIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V +N   L FS  ++P    +  GV+  + K+                 +    R 
Sbjct: 654 DLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDDSLASAFAVTSNSFFVL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 SLKRMAVDDIPQTSRANRGLLVLRELK 738


>gi|168493009|ref|ZP_02717152.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|183577053|gb|EDT97581.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC3059-06]
          Length = 811

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 211/737 (28%), Positives = 383/737 (51%), Gaps = 27/737 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRTSENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S     L  +  ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L   R           + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
              V+  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPKGFP 745
               R   G  V +   
Sbjct: 711 LATSRAKRGLQVLRELK 727


>gi|149010515|ref|ZP_01831886.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|303254051|ref|ZP_07340168.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS455]
 gi|303260743|ref|ZP_07346702.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP-BS293]
 gi|303263101|ref|ZP_07349031.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265021|ref|ZP_07350935.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS397]
 gi|303267482|ref|ZP_07353333.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS457]
 gi|303269834|ref|ZP_07355580.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS458]
 gi|307127595|ref|YP_003879626.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae 670-6B]
 gi|147764996|gb|EDK71925.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|302598987|gb|EFL66016.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS455]
 gi|302635754|gb|EFL66259.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638111|gb|EFL68587.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP-BS293]
 gi|302640631|gb|EFL71032.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS458]
 gi|302642988|gb|EFL73284.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS457]
 gi|302645381|gb|EFL75614.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS397]
 gi|306484657|gb|ADM91526.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae 670-6B]
 gi|332077267|gb|EGI87729.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA17545]
          Length = 811

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 211/737 (28%), Positives = 383/737 (51%), Gaps = 27/737 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S     L  +  ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L   R           + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
              V+  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPKGFP 745
               R   G  V +   
Sbjct: 711 LATSRAKRGLQVLRELK 727


>gi|149004065|ref|ZP_01828871.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|149021721|ref|ZP_01835752.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|147757966|gb|EDK64974.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|147930182|gb|EDK81168.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|301801679|emb|CBW34384.1| topoisomerase IV subunit A [Streptococcus pneumoniae INV200]
 gi|327390206|gb|EGE88549.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA04375]
 gi|332076133|gb|EGI86599.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA41301]
          Length = 811

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 211/737 (28%), Positives = 383/737 (51%), Gaps = 27/737 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S     L  +  ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L   R           + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
              V+  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPKGFP 745
               R   G  V +   
Sbjct: 711 LATSRAKRGLQVLRELK 727


>gi|73921620|sp|Q5XCJ9|PARC_STRP6 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
          Length = 819

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 383/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  
Sbjct: 301 ELKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIE 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+++     S +   L  +  ++ 
Sbjct: 478 ----RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT+ +LL +T G     P   L   R       L   +++          
Sbjct: 534 DELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           D          + V+  G     +  E+        K   ++K+  + +++  +  V  +
Sbjct: 594 DIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V +N   L FS  ++P    +  GV+  + K+                 +    R 
Sbjct: 654 DLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDDSLASAFAVTSNSFFVL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 SLKRMAVDDIPQTSRANRGLLVLRELK 738


>gi|15674931|ref|NP_269105.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes M1 GAS]
 gi|20139229|sp|Q9L7Q4|PARC_STRP1 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|7532889|gb|AAF63267.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|13622074|gb|AAK33826.1| putative DNA topoisomerase IV (subunit C) [Streptococcus pyogenes
           M1 GAS]
          Length = 819

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 383/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  
Sbjct: 301 ELKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIE 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+++     S +   L  +  ++ 
Sbjct: 478 ----RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT+ +LL +T G     P   L   R       L   +++          
Sbjct: 534 DELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           D          + V+  G     +  E+        K   ++K+  + +++  +  V  +
Sbjct: 594 DIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V +N   L FS  ++P    +  GV+  + K+                 +    R 
Sbjct: 654 DLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDDSLASAFAVTSNSFFVL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 SLKRMAVDDIPQTSRANRGLLVLRELK 738


>gi|139473929|ref|YP_001128645.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes str.
           Manfredo]
 gi|209559259|ref|YP_002285731.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes NZ131]
 gi|134272176|emb|CAM30421.1| topoisomerase IV subunit A [Streptococcus pyogenes str. Manfredo]
 gi|209540460|gb|ACI61036.1| Topoisomerase IV subunit A [Streptococcus pyogenes NZ131]
          Length = 819

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 383/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  
Sbjct: 301 ELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIE 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+++     S +   L  +  ++ 
Sbjct: 478 ----RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT+ +LL +T G     P   L   R       L   +++          
Sbjct: 534 DELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           D          + V+  G     +  E+        K   ++K+  + +++  +  V  +
Sbjct: 594 DIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V +N   L FS  ++P    +  GV+  + K+                 +    R 
Sbjct: 654 DLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDDSLASAFAVTSNSFFVL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 SLKRMAVDDIPQTSRANRGLLVLRELK 738


>gi|94994200|ref|YP_602298.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10750]
 gi|94547708|gb|ABF37754.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10750]
          Length = 821

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/750 (28%), Positives = 384/750 (51%), Gaps = 26/750 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +   N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   
Sbjct: 1   MNMSNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RY
Sbjct: 61  YRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT I
Sbjct: 121 TEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   
Sbjct: 181 PPHNLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      
Sbjct: 240 VRSRTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR+++
Sbjct: 300 IAIELKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           +  RS F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q 
Sbjct: 359 IIERSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+ 
Sbjct: 419 EAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHF 545
                  R +  +           ++I +E   V ++  G+++     S +   L  +  
Sbjct: 479 P------RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGK 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           ++ D L     A TT+ +LL +T G     P   L   R       L   +++       
Sbjct: 533 RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEI 592

Query: 606 FVYD-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKV 656
              D          + V+  G     +  E+        K   ++K+  + +++  +  V
Sbjct: 593 LYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPV 652

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +V +N   L FS  ++P    +  GV+  + K+                 +   
Sbjct: 653 IMEDLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDDSLASAFAVTSNSFFVL--T 710

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            R   +           R   G LV +   
Sbjct: 711 QRGSLKRMAVDDIPQTSRANRGLLVLRELK 740


>gi|57650359|ref|YP_186243.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           COL]
 gi|88195080|ref|YP_499880.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151221480|ref|YP_001332302.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509520|ref|YP_001575179.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253733398|ref|ZP_04867563.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258451753|ref|ZP_05699777.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A5948]
 gi|262049828|ref|ZP_06022691.1| DNA topoisomerase IV subunit A [Staphylococcus aureus D30]
 gi|300912075|ref|ZP_07129518.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|81694551|sp|Q5HG64|PARC_STAAC RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|114152111|sp|Q2FYS4|PARC_STAA8 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1777321|dbj|BAA11087.1| DNA topoisomerase IV GrlA subunit [Staphylococcus aureus]
 gi|57284545|gb|AAW36639.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus COL]
 gi|87202638|gb|ABD30448.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374280|dbj|BAF67540.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368329|gb|ABX29300.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253728666|gb|EES97395.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257860584|gb|EEV83408.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A5948]
 gi|259162052|gb|EEW46631.1| DNA topoisomerase IV subunit A [Staphylococcus aureus D30]
 gi|300886321|gb|EFK81523.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|315196387|gb|EFU26739.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140313|gb|EFW32171.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143914|gb|EFW35686.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329730889|gb|EGG67265.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733685|gb|EGG70013.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 800

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 214/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|307325038|ref|ZP_07604242.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
 gi|306889184|gb|EFN20166.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
          Length = 817

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 232/776 (29%), Positives = 375/776 (48%), Gaps = 39/776 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  YL YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   TPPPDDFEERILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDS 125
                F K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R P++ G GNFG++   D 
Sbjct: 68  RPERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM   + L+ + +DE+ VDF   Y+  + EPV  P+ +PNLL NGTSGIAV
Sbjct: 128 PAAMRYTECRMASASSLMTESIDEETVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI +P   ++ L+ ++ GPD PTGG IV     + ++Y  
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIRHPGADLDTLMRHVPGPDLPTGGRIV-GMSGVRDAYET 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE+V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +
Sbjct: 247 GRGTFKIRATVAVEDVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKLQGIADVKDLT 306

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             +    ++       +P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +
Sbjct: 307 DREHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRF 421
           L HR  V+ RRS FR      R+ +++GLL+A L+IDE+I +IR  D           RF
Sbjct: 366 LDHRFNVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRQSDNAAEAKRSLIQRF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q   IL+  LR L K +  +++SE D L  E E++  +L+S  +    ++ E+  
Sbjct: 426 GLSEVQTQYILDTPLRRLTKFDRLELESERDRLNTEIEELTRILDSDAELRKLVSGELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V + F        RRT   E S A   T     +  +P  V++S+ G +           
Sbjct: 486 VAKKFGTP-----RRTVLLESSNA-PVTAVPLEVADDPCRVLLSSTGLLARTADGEPFPV 539

Query: 542 A--LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--------GEAIQ 591
                  + D +  A+ A     +  +++ G+   L   +L              G  I 
Sbjct: 540 EGKAKRAKHDVILSAVPATARGSVGAVTSTGRLLRLTVIDLPMLPESAGPPNLAGGAPIA 599

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + L   ++++     D +   L + + +G    V   +  AN +     + +   +++
Sbjct: 600 EFLSLEEGEELICLTTLDESSPGLAIGTEQGVVKRV-VPDYPAN-KDELEVIGLKEGDRI 657

Query: 651 KLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKIC 706
              V  +   + +  + ++ +LL ++  Q+    R   G+       G  +         
Sbjct: 658 VGAVELRTGEEDLVFITDDAQLLRYAASQVRPQGRAAGGMAGVKLASGAKVISFTAVDPA 717

Query: 707 EGLTWIDSAGRSYN---------RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   AG S           +           R   G    +        + +
Sbjct: 718 SDAVVFTIAGSSGTLDDSVQQSAKLTPFDQYPRKGRATGGVRCHRFLKGEDILVLA 773


>gi|307706407|ref|ZP_07643217.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK321]
 gi|307618194|gb|EFN97351.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK321]
          Length = 811

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/737 (28%), Positives = 384/737 (52%), Gaps = 27/737 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +A++ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDASVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   ++KL+E++ GPDFPTGG I++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKVDKLMEFLPGPDFPTGG-IIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSTLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S     L  +  ++ D L     A T
Sbjct: 473 TAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQAAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ +T G     P   L   R           + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
               +  G    VE  E         K   + K+  E +++  V  +  D V ++ +N  
Sbjct: 593 YFAATRFGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLDDVLLISQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K   +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKADDVLQSAFICNTSSFYLL--TQRGSLKRVSIDEI 710

Query: 729 WLGKRGGVGSLVPKGFP 745
               R   GS V +   
Sbjct: 711 PATSRAKRGSQVLRELK 727


>gi|184201078|ref|YP_001855285.1| DNA topoisomerase IV subunit A [Kocuria rhizophila DC2201]
 gi|183581308|dbj|BAG29779.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
          Length = 851

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 228/773 (29%), Positives = 360/773 (46%), Gaps = 47/773 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +      E++  V +   +E  +L Y+ S I  RA+PD RDG KPV RRI+  M +MGL
Sbjct: 13  DDLPEDFVEHIVDVDVTQEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILFMMDQMGL 72

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                  KSAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PL+ G GNFG++D D  
Sbjct: 73  RPDRGHVKSARVVGEVMGKLHPHGDAAIYDAMVRMAQSFAMRVPLVDGHGNFGSLD-DGP 131

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEARM   A  +   +DED VDF   Y+ +  +P V P+ +PNLL NG +GIAVG
Sbjct: 132 AAPRYTEARMAPAARTLTGDLDEDVVDFVPNYDNQFQQPAVLPAAYPNLLVNGATGIAVG 191

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++  HN++E+   A  L+ NPE ++E+L++ I GPD P+GG IV   E I ++YR G
Sbjct: 192 MATNMAPHNMREVAAGARHLVLNPEATLEELMKLIPGPDLPSGGRIV-GLEGIRDAYRTG 250

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG FR RA   VE+V      IVVTE+PY V   ++ EKI + + AK++  + D+ D + 
Sbjct: 251 RGSFRTRATVSVEQVSPRKQGIVVTELPYMVGPEKITEKIKDAVQAKKLTGISDVVDLTD 310

Query: 307 E-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++       +P  ++  ++  + +E  F +N   L     P+ M L  +L+ + 
Sbjct: 311 RTNGLRLVIEVKNGFNPQAVLAQLYRHTPLEESFGINNVALVD-GQPRTMGLLELLRVYT 369

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR  V+ RR++FR+     R+ +++GLLIA L+IDE+I IIR  ++           F 
Sbjct: 370 DHRIAVVRRRTAFRLAKRQDRLHLVEGLLIAILDIDEVIQIIRGSEETAEARDRLIAVFD 429

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q + IL LRLR L K    ++++E D L  E  +++++L S       +A E+ E 
Sbjct: 430 LSRAQAEHILELRLRQLTKFSRIELEAERDQLQKEIAELEAILGSETTLRGVVADELSET 489

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-----------MIEKEPITVVISNRGWIR 531
            + F        RRT   E       T  Q             I  +P  V +S  G I 
Sbjct: 490 AQKFGDE-----RRTVLLEAEDLPAVTAAQTGGKKAATSVALEISDDPCWVFLSTTGRIA 544

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---- 587
              +           + D+L   + A     I  +++ G+   +   ++   +       
Sbjct: 545 RSATRRPLADGSRRFKHDALTSVVPATARGEIAAVTSTGRMLRVSCVDIPVLQDFDGVPR 604

Query: 588 ----EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                     + L  N+ +V          + + ++ G    V     +   +     +K
Sbjct: 605 LADGVPAADFLGLEKNEALVGLAPLSE--VVAIGTAAGVVKRVNPDYPLNLDQ--WPAIK 660

Query: 644 VSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           +   +++  V     G  + +V  + KLL F    +    R   GV       G      
Sbjct: 661 LKDGDRVVGVSAAPDGTELVMVSSDAKLLHFPASAVRPQGRTAGGVAGMKLAAGEHVIFC 720

Query: 702 CFKICEGLTWIDSAGRSYN----------RSENDLLGWLGKRGGVGSLVPKGF 744
              + +  T + +  R             +           R   G    +  
Sbjct: 721 AAVVPQDSTVVVTQARGDGQLPEMGEASVKVTPLSEFPAKGRATAGVRAQRLL 773


>gi|29828965|ref|NP_823599.1| DNA topoisomerase IV subunit A [Streptomyces avermitilis MA-4680]
 gi|29606070|dbj|BAC70134.1| putative a subunit of topoisomerase IV [Streptomyces avermitilis
           MA-4680]
          Length = 818

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 230/768 (29%), Positives = 374/768 (48%), Gaps = 38/768 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   TPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDS 125
                + K AR+VGEV+GKLHPHGD S+YD+LVRLAQPF  R PL+ G GNFG++   D 
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG+SGIAV
Sbjct: 128 PAAMRYTECRMADATSLMTESIDEDTVDFSPNYDGQEQEPVALPAAFPNLLVNGSSGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI  P   +E L++++ GPD PTGG IV     I ++Y  
Sbjct: 188 GMATNMPPHNLGEVISAARHLIRYPGADLETLMKHVPGPDLPTGGRIV-GLTGIRDAYES 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE+V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +
Sbjct: 247 GRGTFKIRATVSVEDVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +
Sbjct: 307 DRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           L HR EV+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ D     K  ++ RF
Sbjct: 366 LDHRFEVVRRRSEFRRGKKRDRLHLVEGLLVALLDIDEVIRLIRSSDNSAQAKERLIERF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q   IL+  LR L + +  +++SE D L  E +++  +L S  +    ++ E+  
Sbjct: 426 SLSEVQTQYILDTPLRRLTRFDRIELESERDRLNGEIDELTGILESDAELRKLVSGELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V + F        RRT   E + +  AT+   + +     ++ S     R+         
Sbjct: 486 VAKKFGT-----DRRTVLLESAGSTAATVPLQVADDPCRVLLSSTGLLARTANGAPFGED 540

Query: 542 ALHFKEGDSLK-IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA---------IQ 591
           A   +    +   A+ A     +  +++ G+   L   +L        A          +
Sbjct: 541 ADGRRTKHDVIVSAVPATARGEVGAVTSSGRLLRLNVIDLPRLPETTSAPNLSGGAPISE 600

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            L  L  ++ +V     D +   L + + +G    V       + +     + +   +++
Sbjct: 601 FLSSLEGDETVVCLTTLDESSPGLALGTEQGVVKRVVPD--YPSNKGELEVITLKDGDRI 658

Query: 651 KLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKIC 706
              ++     + +  + ++ +LL +   Q+    R   G+      DG  +         
Sbjct: 659 VGAIELSTGEEDLVFITDDAQLLRYQASQVRPQGRAAGGMAGIKLTDGAKVISFTAVDPA 718

Query: 707 EGLTWIDSAG---------RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                   AG         ++  +           R   G    +   
Sbjct: 719 ADAVVFTVAGSRGTLDDSVQTTAKLTPFDQYPRKGRATGGVRCQRFLK 766


>gi|82750948|ref|YP_416689.1| DNA topoisomerase IV subunit A [Staphylococcus aureus RF122]
 gi|82656479|emb|CAI80901.1| topoisomerase IV subunit A [Staphylococcus aureus RF122]
          Length = 800

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/756 (28%), Positives = 396/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++ + I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKHMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDNLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|297207991|ref|ZP_06924422.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296887234|gb|EFH26136.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 800

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E I + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEIILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|295396856|ref|ZP_06806984.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aerococcus viridans ATCC
           11563]
 gi|294974882|gb|EFG50581.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aerococcus viridans ATCC
           11563]
          Length = 820

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 220/762 (28%), Positives = 397/762 (52%), Gaps = 32/762 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ ++L   + +R+  Y+   I++RA+PD+RDG KPV RRI+ AM + G    + F+KS
Sbjct: 3   EIQKLTLEEVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILFAMFQEGNTSSSNFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG VIG  HPHGD SVY+++VR++Q +  R  L+   GN G++DGDSAAA RYTEAR
Sbjct: 63  AKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKNREVLVEMHGNNGSMDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A+ +L+ +D+D V+    +++   EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSKIADELLRDLDKDTVEMILNFDDTAEEPTVLPAGFPNLLVNGATGISAGYATEIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A   LID+P  +I KL++++ GPDFPTG  I++ +E + ++Y  GRG   VR++
Sbjct: 183 LGEIIDATTYLIDHPNATINKLMDFVPGPDFPTGA-IIQGKEELKKAYTSGRGKVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   IV+TEIPY+V K+ L+ ++ EL + + I  ++++RDE+  +   ++  
Sbjct: 242 HHIETDRGGKEKIVITEIPYEVNKANLVRRMDELRLNRSIDGIQEVRDETDRNGLQIVIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +    D ++   +  SD++  +  NM  ++  R P+++ +   L  ++ HR E++ RR
Sbjct: 302 LKKDASSDAILNYFYKNSDLQINYNFNMVAINDQR-PELVGIREALNAYIGHRYEIIRRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           ++F +    RR+ I+ GL+ A   +D++IA IRN         +    F  +E Q +AI+
Sbjct: 361 TTFDLNKAQRRLHIVDGLVKAMSILDQVIATIRNSKNKSDSRYNLIEAFDFSEAQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +L+L  L   +   +++E   L  +     ++L+  K  + ++  E++ +K+ ++     
Sbjct: 421 SLQLYRLTNTDVTALENERLQLNEDIAAYQAILSDDKVLYGRMKSELKAIKKAYASE--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGD 549
              R T  +    +    +Q +I +E + VV++  G+I+     S     +  +  ++GD
Sbjct: 478 ---RRTEIQDEIQEVIVKKQLLIPEEDVVVVVTRGGYIKRSSLRSFKASGIEEVGLRDGD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAFV 607
            ++      T D+++ ++  G     P   L   R     E +   I    ++ I+  F 
Sbjct: 535 HVQFLEKMSTLDQLVFITNKGNYIFQPVYELQDIRWKDLGEHVSQRIAFASDESIIGVFK 594

Query: 608 YDSTCK--LLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSE-EKMKLVVKVTG--- 658
           YD   K  LL+ S+ G       SE         K    + +SS+ +++  V ++ G   
Sbjct: 595 YDENSKDNLLLASAAGMIKQTALSEFKEFRGYKNKSSLAMNLSSDTDQVIGVYRIDGATD 654

Query: 659 ---DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVIC--FKICEGLTWI 712
                V +V      L +SID+I  +  R KGV+  + K       +       + L  +
Sbjct: 655 QSQAQVILVTHFGFTLRYSIDEISIIGVRAKGVKSINLKQDDYVVGLSYAAVPDDNLQLM 714

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
               R + +        +  R   G +  K    +  +F+++
Sbjct: 715 MVTQRGHMKRLKWAEINVLGRAKRGLVALKELKSNPHRFVAA 756


>gi|50914075|ref|YP_060047.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10394]
 gi|50903149|gb|AAT86864.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10394]
          Length = 821

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/750 (28%), Positives = 384/750 (51%), Gaps = 26/750 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +   N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   
Sbjct: 1   MNMSNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RY
Sbjct: 61  YRKSAKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT I
Sbjct: 121 TEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   
Sbjct: 181 PPHNLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      
Sbjct: 240 VRSRTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR+++
Sbjct: 300 IAIELKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           +  RS F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q 
Sbjct: 359 IIERSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+ 
Sbjct: 419 EAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHF 545
                  R +  +           ++I +E   V ++  G+++     S +   L  +  
Sbjct: 479 P------RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGK 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           ++ D L     A TT+ +LL +T G     P   L   R       L   +++       
Sbjct: 533 RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEI 592

Query: 606 FVYD-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKV 656
              D          + V+  G     +  E+        K   ++K+  + +++  +  V
Sbjct: 593 LYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPV 652

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +V +N   L FS  ++P    +  GV+  + K+                 +   
Sbjct: 653 IMEDLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDDSLASAFAVTSNSFFVL--T 710

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            R   +           R   G LV +   
Sbjct: 711 QRGSLKRMAVDDIPQTSRANRGLLVLRELK 740


>gi|171317649|ref|ZP_02906834.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MEX-5]
 gi|171097177|gb|EDT42027.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MEX-5]
          Length = 777

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 283/751 (37%), Positives = 421/751 (56%), Gaps = 42/751 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 SKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------------------AKRIPLLEDI 301
           E+ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 ELARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLLT 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR+ D+PK  ++S
Sbjct: 380 ILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRDADEPKAALMS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LT+ Q + IL +RLR L +LE+ +I+ EL+ L  EK K++ LL +       +  EI
Sbjct: 440 AFGLTDRQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 ETDAKQYGD-----DRRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--- 656
             ++  +      +LL+ SS G  F+ +  ++++  + GK F+ + +      V      
Sbjct: 611 SHLMHYYAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDTGVAAGAVPLAPMP 670

Query: 657 ---TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
                  VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +
Sbjct: 671 VLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DDKETLVQALAIDPAGVVL 729

Query: 713 DSAGRSYNRSENDLLG-----WLGKRGGVGS 738
              GR     +  L        +GKR   G 
Sbjct: 730 IGTGRGGKAQDETLSYAGLAPHIGKRARKGR 760


>gi|77405907|ref|ZP_00782988.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae H36B]
 gi|77175481|gb|EAO78269.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae H36B]
          Length = 819

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 229/747 (30%), Positives = 395/747 (52%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+  ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVAVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +  
Sbjct: 241 RTAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  
Sbjct: 301 ELKKEADETIVLNYLFKYTDLQVNYNFNMVAIDD-YTPKQVGLSRILTSYIAHRREIIIA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFAN--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
              RR+   E           ++I +E   V ++  G+++     S +   +  L  +E 
Sbjct: 477 --TRRSELQE-LAETIEIDTASLIIEEDTYVSVTRGGYVKRTSPRSFNASTVDELGKRED 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L    +A TT  +L+ +  G     P   L   R           L++   N++I+ A
Sbjct: 534 DELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIYA 593

Query: 606 FVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGD 659
            + D   K     V+S G     E  EI    T K KT    K+ + ++ +  V  +  +
Sbjct: 594 ELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQLE 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   L FSI+ +P +  +  GV+  + KD              L  +    R 
Sbjct: 654 DVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDSDHIVSAFIANTTSLYLLTH--RG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +     +     R   G  V +   
Sbjct: 712 SLKRMAIDVIPTTSRANRGLQVLRELK 738


>gi|229162429|ref|ZP_04290390.1| DNA topoisomerase 4 subunit A [Bacillus cereus R309803]
 gi|228620908|gb|EEK77773.1| DNA topoisomerase 4 subunit A [Bacillus cereus R309803]
          Length = 807

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 217/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    + ++ + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +DE+I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRASKDKRNAKDNLSTKFGFTEAQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ S+L S ++  + I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEQEADELNKKIIELQSILQSEQRLLHVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  L+ L  ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDEMII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++ +  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDYVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATYGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|162950918|gb|ABY21498.1| ParC [Shigella boydii]
          Length = 657

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 253/668 (37%), Positives = 413/668 (61%), Gaps = 16/668 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSI 675
            ++L+F +
Sbjct: 650 GRMLMFPV 657


>gi|312797003|ref|YP_004029925.1| Topoisomerase IV subunit A [Burkholderia rhizoxinica HKI 454]
 gi|312168778|emb|CBW75781.1| Topoisomerase IV subunit A (EC 5.99.1.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 778

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 283/770 (36%), Positives = 423/770 (54%), Gaps = 44/770 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +   + +   +   + ++L    E  YL YA+S +K RA+P++ DG KPV RRI++A
Sbjct: 1   MSEELELDFSPPSDG--EYLTLGDYAERAYLDYAVSVVKSRALPEVTDGQKPVQRRILYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMGL   A   KSAR+VG+V+GK HPHGD S Y++LVRLAQ F  RYPLI GQGNFG+
Sbjct: 59  MHEMGLAADAKPVKSARVVGDVLGKYHPHGDSSAYEALVRLAQDFSMRYPLIDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+T +A+L+L  +D+  VDF   Y+    EP   P + P +L NG 
Sbjct: 119 RDGDGAAAMRYTEARLTPIAQLLLDEIDQGTVDFIPNYDGSFEEPKSLPVRLPFVLLNGA 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT +P HN++E+ +AA+ LI NP +    L+E I GPDFP GG I+ S   I 
Sbjct: 179 SGIAVGMATEVPPHNLREVAQAAIELIRNPNLDHAALMERIPGPDFPGGGQIISSPAEIA 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG  +VRARW +EE+ RG W +V+TE+P      +++E+I EL   K     + 
Sbjct: 239 AAYESGRGSLKVRARWKIEELARGQWQLVITELPPGTSSQKVLEEIEELTNPKVKLGKKT 298

Query: 301 IRDE--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +  E                        VR+VL PK+  +DP   + ++   + +E+  P
Sbjct: 299 LTPEQLQTKQSLLALLDAVRDESGKDSPVRLVLEPKSSRIDPTEFVNTLLAYTSLESSAP 358

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +N+ ++     P+   L  IL+EW+ +R   + RR+ FR+  +  R+ IL+G +I +LN+
Sbjct: 359 INLVMIGADGRPRQKGLGEILREWIGYRFATVTRRTRFRLSKVQDRIHILEGRMIVFLNL 418

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I IIR  D+PK  +++ F L++ Q D IL +RLR L +LE+ +I+ EL  L  EK +
Sbjct: 419 DEVIRIIRESDEPKAALIAAFGLSQRQADDILEIRLRQLARLEKIKIEKELGELRDEKAR 478

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ LL S       I  EI    + F  +     RRT   +  RA      +A +  EP+
Sbjct: 479 LEQLLGSDVAMKRLIIKEIEADAKQFGDA-----RRTLIQQDKRATF----EARVVDEPV 529

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV+S RGW+R+LK H +D S   FK GDSL  A    T D ++   ++G+ Y++P   L
Sbjct: 530 TVVVSQRGWVRTLKGHGLDASGFTFKAGDSLYAAFQCRTPDTLIAWGSNGRVYSVPVAAL 589

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG G  +  LI+L     ++  F       LL+ SS G  FI    ++I+  + GK+
Sbjct: 590 PGGRGDGVPVTSLIELEAGTHLMHYFAAPLEQPLLLASSNGFGFIARIGDMISRVKAGKS 649

Query: 641 FLKVSSEEKMKLVVKV--TGDHVAVVG----ENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
           F+ + +  +    + +      VA +     +  +LL+F +D++  +S  G+GV L    
Sbjct: 650 FMTIDAGAQPLAPMPMWPDASQVACLALGAKDETRLLVFGLDEMKTLSSGGRGVTLIGL- 708

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYN-----RSENDLLGWLGKRGGVGS 738
           DG    +    I +    +  AGR           + L  ++GKR   G 
Sbjct: 709 DGNEQLLQALAIGQAGLLLSGAGRGGKPQQQRLVGDALAPYVGKRARRGK 758


>gi|77408983|ref|ZP_00785704.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae COH1]
 gi|77172406|gb|EAO75554.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae COH1]
          Length = 819

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 229/747 (30%), Positives = 397/747 (53%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A+ +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIADYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+  ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVAVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +  
Sbjct: 241 RTAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  
Sbjct: 301 ELKKEADETIVLNYLFKYTDLQVNYNFNMVAIDD-YTPKQVGLSRILTSYIAHRREIIIA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFAN--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
              RR+   E           ++I +E   V ++  G+++     S +   +  L  +E 
Sbjct: 477 --TRRSELQE-LAETIEIDTASLIIEEDTYVSVTRGGYVKRTSPRSFNASTVDELGKRED 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L    +A TT  +L+ +  G     P   L   R           L++   N++I+ A
Sbjct: 534 DELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIYA 593

Query: 606 FVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGD 659
            + D   K     V+S G     E  EI    T K KT    K+ + ++ +  V  +  +
Sbjct: 594 ELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQLE 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N  +L FSI+ +P +  +  GV+  + KD              L  +    R 
Sbjct: 654 DVILVTYNGYVLRFSINDVPVVGSKAAGVKAMNLKDSDHIVSAFIANTTSLYLLTH--RG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +     +     R   G  V +   
Sbjct: 712 SLKRMAIDVIPTTSRANRGLQVLRELK 738


>gi|25011277|ref|NP_735672.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae NEM316]
 gi|76787368|ref|YP_329856.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae A909]
 gi|77412789|ref|ZP_00788994.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 515]
 gi|15186714|dbj|BAB62880.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|23095701|emb|CAD46887.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562425|gb|ABA45009.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae A909]
 gi|77161085|gb|EAO72191.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 515]
          Length = 819

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 229/747 (30%), Positives = 395/747 (52%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+  ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVAVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +  
Sbjct: 241 RTAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  
Sbjct: 301 ELKKEADETIVLNYLFKYTDLQVNYNFNMVAIDD-YTPKQVGLSRILTSYIAHRREIIIA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFAN--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
              RR+   E           ++I +E   V ++  G+++     S +   +  L  +E 
Sbjct: 477 --TRRSELQE-LAETIEIDTASLIIEEDTYVSVTRGGYVKRTSPRSFNASTVDELGKRED 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L    +A TT  +L+ +  G     P   L   R           L++   N++I+ A
Sbjct: 534 DELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIYA 593

Query: 606 FVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGD 659
            + D   K     V+S G     E  EI    T K KT    K+ + ++ +  V  +  +
Sbjct: 594 ELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQLE 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   L FSI+ +P +  +  GV+  + KD              L  +    R 
Sbjct: 654 DVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDSDHIVSAFIANTTSLYLLTH--RG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +     +     R   G  V +   
Sbjct: 712 SLKRMAIDVIPTTSRANRGLQVLRELK 738


>gi|77412214|ref|ZP_00788533.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae CJB111]
 gi|77161721|gb|EAO72713.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae CJB111]
          Length = 819

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 229/747 (30%), Positives = 395/747 (52%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+  ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVAVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +  
Sbjct: 241 RTAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  
Sbjct: 301 ELKKEADETIVLNYLFKYTDLQVNYNFNMVAIDD-YTPKQVGLSRILTSYIAHRREIIIA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFAN--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
              RR+   E           ++I +E   V ++  G+++     S +   +  L  +E 
Sbjct: 477 --TRRSELQE-LAETIEIDTASLIIEEDTYVSVTRGGYVKRTSPRSFNASTVDELGKRED 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L    +A TT  +L+ +  G     P   L   R           L++   N++I+ A
Sbjct: 534 DELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIYA 593

Query: 606 FVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGD 659
            + D   K     V+S G     E  EI    T K KT    K+ + ++ +  V  +  +
Sbjct: 594 ELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQLE 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   L FSI+ +P +  +  GV+  + KD              L  +    R 
Sbjct: 654 DVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDSDHIVSAFIANTTSLYLLTH--RG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +     +     R   G  V +   
Sbjct: 712 SLKRMAIDVIPTTSRANRGLQVLRELK 738


>gi|94990280|ref|YP_598380.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10270]
 gi|94543788|gb|ABF33836.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10270]
          Length = 824

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 383/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 7   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 67  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 127 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 187 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRS 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 246 RTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  
Sbjct: 306 ELKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIE 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI
Sbjct: 365 RSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+    
Sbjct: 425 VTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+++     S +   L  +  ++ 
Sbjct: 483 ----RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDD 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT+ +LL +T G     P   L   R       L   +++          
Sbjct: 539 DELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYA 598

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           D          + V+  G     +  E+        K   ++K+  + +++  +  V  +
Sbjct: 599 DIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME 658

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V +N   L FS  ++P    +  GV+  + K+                 +    R 
Sbjct: 659 DLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDDSLASAFAVTSNSFFVL--TQRG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 717 SLKRMAVDDIPQTSRANRGLLVLRELK 743


>gi|167569284|ref|ZP_02362158.1| DNA topoisomerase IV subunit A [Burkholderia oklahomensis C6786]
          Length = 776

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 286/770 (37%), Positives = 416/770 (54%), Gaps = 42/770 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +              +++L    E  YL+YA+S +K RA+PD+ DG KPV RRI+ A
Sbjct: 1   MDDNTPDLFAEPAAPEGDSLTLGRYAESAYLSYAVSVVKGRALPDVCDGQKPVQRRILFA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+
Sbjct: 61  MNEMGLGNNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+T +A+L+L  + E  VDF   Y+    EP + P + P +L NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAQLLLDEIGEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVG+AT IPSHN++E+  AA+ALI NP++   +L++ + GPDFP GG I+ S   I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRNPKLPHAELMQLVPGPDFPGGGQIISSDAEIS 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--------- 291
            +Y  GRG  +VRARW +EE+ RG W +VVTE+P      +++E+I EL           
Sbjct: 241 AAYETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKAGKKT 300

Query: 292 ---------AKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                       + LL+ +RDES     VR+V  PK R++D    + S+   + +E+   
Sbjct: 301 LTQEQINTKKSMLDLLDAVRDESGKDAPVRLVFEPKTRTIDQSDFVNSLLAHTSLESNAT 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           LN+ ++     P    L  IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNI
Sbjct: 361 LNLVMIGEDGRPAQKGLAAILGEWVRFRQGTVTRRCRHRLGKVNDRIHILEGRMIVFLNI 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I IIR  D+PK  ++  F LTE Q + IL +RLR L +LE+ +I+ EL+ L AEK K
Sbjct: 421 DEVIRIIRESDEPKQALIGAFGLTERQAEDILEIRLRQLARLEKIKIEKELEELRAEKAK 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ LL +       +  EI    + F        RRT   +  RA      +  +  EP+
Sbjct: 481 LEELLANESAMKRLMIKEIEADAKQFGDE-----RRTLIQQEKRATF----ETKVVDEPV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV+S +GW+R+LK H +D ++  FK GD L  A    T D ++   + G+ Y++    L
Sbjct: 532 TVVVSQKGWVRALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVSVQVL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG G  +  LI+L     ++  F   +   LL+ SS G  FI +  ++++  + GK+
Sbjct: 592 PGGRGDGVPVTSLIELESGSHLLHYFAAPAEQPLLLASSNGFGFIAKVGDMVSRVKAGKS 651

Query: 641 FLKVS----SEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK 693
           F+ +             + V      VA +    +LL+F ID++  +   G+GV L +  
Sbjct: 652 FMTIDTGIAGGAAPLAPMPVLPAASRVACLSSGGRLLVFGIDEMKTLGGGGRGVILMALD 711

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSEN-----DLLGWLGKRGGVGS 738
                 V    I      +   GR     E       L   +GKR   G 
Sbjct: 712 PKETL-VQALAIDAAGVVLTGTGRGGKAQEETLAGRALEPHVGKRARKGR 760


>gi|167562026|ref|ZP_02354942.1| DNA topoisomerase IV subunit A [Burkholderia oklahomensis EO147]
          Length = 776

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 286/770 (37%), Positives = 416/770 (54%), Gaps = 42/770 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +              +++L    E  YL+YA+S +K RA+PD+ DG KPV RRI+ A
Sbjct: 1   MDDNTPDLFAEPAAPEGDSLTLGRYAESAYLSYAVSVVKGRALPDVCDGQKPVQRRILFA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+
Sbjct: 61  MNEMGLGNNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+T +A+L+L  + E  VDF   Y+    EP + P + P +L NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAQLLLDEIGEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVG+AT IPSHN++E+  AA+ALI NP++   +L++ + GPDFP GG I+ S   I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRNPKLPHAELMQLVPGPDFPGGGQIISSDAEIS 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--------- 291
            +Y  GRG  +VRARW +EE+ RG W +VVTE+P      +++E+I EL           
Sbjct: 241 AAYETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKAGKKT 300

Query: 292 ---------AKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                       + LL+ +RDES     VR+V  PK R++D    + S+   + +E+   
Sbjct: 301 LTQEQINTKKSMLDLLDAVRDESGKDAPVRLVFEPKTRTIDQSDFVNSLLAHTSLESNAT 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           LN+ ++     P    L  IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNI
Sbjct: 361 LNLVMIGEDGRPAQKGLAAILGEWVRFRQGTVTRRCRHRLGKVNDRIHILEGRMIVFLNI 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I IIR  D+PK  ++  F LTE Q + IL +RLR L +LE+ +I+ EL+ L AEK K
Sbjct: 421 DEVIRIIRESDEPKQALIGAFGLTERQAEDILEIRLRQLARLEKIKIEKELEELRAEKAK 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ LL +       +  EI    + F        RRT   +  RA      +  +  EP+
Sbjct: 481 LEELLANESAMKRLMIKEIEADAKQFGDE-----RRTLIQQEKRATF----ETKVVDEPV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV+S +GW+R+LK H +D ++  FK GD L  A    T D ++   + G+ Y++    L
Sbjct: 532 TVVVSQKGWVRALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVSVQVL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG G  +  LI+L     ++  F   +   LL+ SS G  FI +  ++++  + GK+
Sbjct: 592 PGGRGDGVPVTSLIELESGSHLLHYFAAPAEQPLLLASSNGFGFIAKVGDMVSRVKAGKS 651

Query: 641 FLKVS----SEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK 693
           F+ +             + V      VA +    +LL+F ID++  +   G+GV L +  
Sbjct: 652 FMTIDTGVAGGAAPLAPMPVLPAASRVACLSSGGRLLVFGIDEMKTLGGGGRGVILMALD 711

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSEN-----DLLGWLGKRGGVGS 738
                 V    I      +   GR     E       L   +GKR   G 
Sbjct: 712 PKETL-VQALAIDAAGVVLTGTGRGGKAQEETLAGRALEPHVGKRARKGR 760


>gi|76799493|ref|ZP_00781631.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 18RS21]
 gi|76585154|gb|EAO61774.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 18RS21]
          Length = 819

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 228/747 (30%), Positives = 394/747 (52%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+  ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVAVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +  
Sbjct: 241 RTAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  
Sbjct: 301 ELKKEADETIVLNYLFKYTDLQVNYNFNMVAIDD-YTPKQVGLSRILTSYIAHRREIIIA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFAN--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
              RR+   E           ++I +E   V ++  G+++     S +   +  L  +E 
Sbjct: 477 --TRRSELQE-LAETIEIDTASLIIEEDTYVSVTRGGYVKRTSPRSFNASTVDELGKRED 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L    +A TT  +L+ +  G     P   L   R           L++   N++I+ A
Sbjct: 534 DELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIYA 593

Query: 606 FVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGD 659
            + D   K     V+  G     E  EI    T K KT    K+ + ++ +  V  +  +
Sbjct: 594 ELVDDFTKETYFAVTRLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQLE 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   L FSI+ +P +  +  GV+  + KD              L  +    R 
Sbjct: 654 DVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDSDHIVSAFIANTTSLYLLTH--RG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +     +     R   G  V +   
Sbjct: 712 SLKRMAIDVIPTTSRANRGLQVLRELK 738


>gi|71903357|ref|YP_280160.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS6180]
 gi|71802452|gb|AAX71805.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS6180]
          Length = 821

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/750 (28%), Positives = 384/750 (51%), Gaps = 26/750 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +   N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   
Sbjct: 1   MNMSNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RY
Sbjct: 61  YRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT I
Sbjct: 121 TEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   
Sbjct: 181 PPHNLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      
Sbjct: 240 VRSRTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR+++
Sbjct: 300 IAIELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           +  RS F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q 
Sbjct: 359 IIERSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKTDAKENLKVSYDFSEEQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+ 
Sbjct: 419 EAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHF 545
                  R +  +           ++I +E   V ++  G+++     S +   L  +  
Sbjct: 479 P------RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGK 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           ++ D L     A TT+ +LL +T G     P   L   R       L   +++       
Sbjct: 533 RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEI 592

Query: 606 FVYD-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKV 656
              D          + V+  G     +  E+        K   ++K+  + +++  +  V
Sbjct: 593 LYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPV 652

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +V +N   L FS  ++P    +  GV+  + K+                 +   
Sbjct: 653 IMEDLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDDSLASAFAVTSNSFFVL--T 710

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            R   +           R   G LV +   
Sbjct: 711 QRGSLKRMAVDDIPQTSRANRGLLVLRELK 740


>gi|229174258|ref|ZP_04301791.1| DNA topoisomerase 4 subunit A [Bacillus cereus MM3]
 gi|228609115|gb|EEK66404.1| DNA topoisomerase 4 subunit A [Bacillus cereus MM3]
          Length = 807

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 217/751 (28%), Positives = 382/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    + ++ + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +DE+I  IR     +    +   +F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRASKDKRNAKDNLSTKFGFTEAQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ S+L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEQEADELNKKIIELQSILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSV-DLSALHF 545
                  R    E    +     + MI +E + V ++  G+++    +SH+  +      
Sbjct: 479 D------RRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +   R     + +  L+ L  ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDEMII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++       +    + +  ++ +  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDYVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATYGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|239637044|ref|ZP_04678038.1| DNA topoisomerase IV, A subunit [Staphylococcus warneri L37603]
 gi|239597394|gb|EEQ79897.1| DNA topoisomerase IV, A subunit [Staphylococcus warneri L37603]
          Length = 801

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 220/757 (29%), Positives = 407/757 (53%), Gaps = 25/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G  F   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTFDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++Y+ GPDFPTGG I++  + I ++Y  G+G   V
Sbjct: 181 PHNLGEVIQATLKYIDNPDITVSQLMKYMKGPDFPTGG-IIQGLDGIKKAYESGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   EE+  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVDEEELRNGRKELIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  ++ H+ EV+
Sbjct: 300 AIELKKDVNSEAIKNFLYKNSDLQISYNFNMVAISD-GRPKLMGIKQIIDSYINHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F ++  ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ F  TE Q +
Sbjct: 359 ANRTKFDLEHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEFDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E D L    + +  +L+      N I  E+ E+++ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEQEHDELSNLIKDLRHILDDHDALLNVIKNELTEIRKKFKTD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ M+  E + + ++  G+I+   + S     +S +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVVLSLTRHGYIKRTSTRSFNASGVSEVGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL   L  +T D  L+ +  G+   +P      +  +  G+ +  ++ ++ ++ ++ 
Sbjct: 533 DGDSLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKELGQHVSQIVSIDEDEQVID 592

Query: 605 AFVYDS----TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD 659
            F            ++ +  G        +       K    +KV  ++++  +++V  D
Sbjct: 593 VFNEKDFNQREAFYIMATRNGMIKKSSVPQFKTTRYNKPLIAMKVKEQDEVINIMRVESD 652

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  VV      L +S +++ +   R  GV+  + KD     +    I    + + +  R
Sbjct: 653 QLITVVTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDFVVMTQM-INHSESVMMATQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
              +     +    KR   G  + K   ++  + +++
Sbjct: 712 GAIKHIGFKVLQEAKRAQRGITLLKELKKAPHRIVAA 748


>gi|299822649|ref|ZP_07054535.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Listeria grayi DSM 20601]
 gi|299816178|gb|EFI83416.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Listeria grayi DSM 20601]
          Length = 820

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 211/753 (28%), Positives = 387/753 (51%), Gaps = 24/753 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G     
Sbjct: 2   SLPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+KSA+ VG VIG  HPHGD SVY+++VR++Q F  R  LI   GN G++DGD  AA R
Sbjct: 62  GFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDFKVRNSLIEMHGNNGSVDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT 
Sbjct: 122 YTEARLSKIAAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATD 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI EA +  +D P+ S+  +++ + GPDFPTGGII    + I ++Y  G+G  
Sbjct: 182 IPPHNLTEIIEAVIKRLDKPDCSLADIMKIVKGPDFPTGGIIQG-IDGIRKAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR++  VE++  G   I + EIPY+V K+ L+++I EL I KRI  + ++RDE+     
Sbjct: 241 IVRSKTEVEDLRGGRKQITIHEIPYEVNKANLVKRIDELRIEKRIEGISEVRDETDRTGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     +  + + ++  +F  +D++  +     V    + P++M +  +L  +++H++E
Sbjct: 301 RIAVELKKDANSEGVLNYLFKNTDLQISYNF-NMVAIHNKRPELMGIIAMLDAYISHQKE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQ 427
           ++ +RS + ++    R  I++GL+ A   +DE+I +IR     +     +   +  +E Q
Sbjct: 360 IITKRSEYDIKKAKARQHIIEGLIKALSILDEVIQLIRGSKDKRDAKLNLQQTYQFSERQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   + + +  E   L A+ + ++ +L    +    +  E+ E+K+ + 
Sbjct: 420 AEAIVSLQLYRLTNTDIHDLNKEAAELAAQIDALEKILGDEGELVKTLKAELTEIKKNYK 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
                   R T  E   A+    ++ ++  E + V ++  G+++     S        L 
Sbjct: 480 TP------RLTAIENEIAEIVIDKEVLVASEDVIVSVTKEGYVKRTSYRSYTASKGDELA 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQD 601
            KE D        +T D +LL ++ G     P   L   R          ++ ++   ++
Sbjct: 534 MKETDHAIFIEKMNTMDALLLFTSHGNFIYRPVHELPDIRWKNLGDHVSHIVTEMGSGEE 593

Query: 602 IVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVT 657
           ++ A      + T KL+ ++  G   +   +        K    +K+ +++K+  V    
Sbjct: 594 VIQALPLSKANETQKLVFLTQAGMTKVSLIANYRPQRYSKAMMAIKLKADDKLLNVAVAD 653

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD-GGISDVICFKICEGLTWIDS 714
           G + + +   N   L + I +IPE   R  GV+  + K+   +   +  +  E    I +
Sbjct: 654 GSEDIFIATRNGYGLRYPITEIPESGTRTAGVKAINLKETDEVVGGVLLQSEENRGIILT 713

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
             R   +           R   G L+ +    +
Sbjct: 714 TQRGSMKKMKASEFEAISRAKRGLLMLRELKAN 746


>gi|329940025|ref|ZP_08289307.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus
           M045]
 gi|329300851|gb|EGG44747.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus
           M045]
          Length = 817

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 221/764 (28%), Positives = 375/764 (49%), Gaps = 36/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL  
Sbjct: 11  PDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++   D  A
Sbjct: 71  DRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM +   L+ + ++ED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMAEATSLMTESIEEDTVDFGPNYDGQEQEPVALPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN++E+  AA  LI  P   ++ L++++ GPD PTGG IV     I ++Y  GR
Sbjct: 191 ATNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLSGIRDAYASGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   ++ V      +VVTE+P+ V   ++I KI +L+ AK+I  + D++D +  
Sbjct: 250 GTFKIRATVEIDTVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDR 309

Query: 308 D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +L 
Sbjct: 310 EHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVD-GQPLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           HR +V+ RRS FR      R+ +++GLL A ++IDE+I +IR+ +     K  ++ RF+L
Sbjct: 369 HRFDVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKERLIERFAL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q   IL+  LR L K +  +++SE + L AE  ++  +L+S  +    ++ E+  V 
Sbjct: 429 SDVQTQYILDTPLRRLTKFDRIELESEKERLNAEIAELTRILDSDAELRKLVSAELAAVS 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F        RRT   E S A  A   Q   +   + +  +      +  +   D    
Sbjct: 489 KKFGT-----DRRTVLLESSGAPAAVPLQVADDPCRVLLSSTGLLARTADANPFADDGKG 543

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--------EAIQLLID 595
              + D +  A+ A     + ++++ G+   +   +L                 +   + 
Sbjct: 544 RRVKHDLIVSAVPATARGEVGVVTSAGRLLRVNVVDLPQLPEQTGTPNLSGGAPLAEFVS 603

Query: 596 LNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           L+ ++ +V     D +   L + + +G    V       + ++    + +   +++    
Sbjct: 604 LDADETVVCLTTLDESSPGLALGTEQGVVKRVVPD--YPSNKEELEVITLKEGDRIVGAA 661

Query: 655 --KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEGLT 710
             +   + +  + ++ +LL +   Q+    R   GV       G  +             
Sbjct: 662 ELRTGEEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGIKLTQGAKVISFTAVDPAADAV 721

Query: 711 WIDSAG---------RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
               AG         ++  ++          R   G    +   
Sbjct: 722 VFTVAGSRGTLDDSVQTTAKATPFDQYPRKGRATGGVRCQRFLK 765


>gi|325295342|ref|YP_004281856.1| DNA gyrase, A subunit [Desulfurobacterium thermolithotrophum DSM
            11699]
 gi|325065790|gb|ADY73797.1| DNA gyrase, A subunit [Desulfurobacterium thermolithotrophum DSM
            11699]
          Length = 1247

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 207/703 (29%), Positives = 366/703 (52%), Gaps = 14/703 (1%)

Query: 62   SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
             ++ +D    F  +  +V   +GK HPHGD +VYD+LVR+AQ F  RYPLI GQGNFG+I
Sbjct: 486  YDIQVDEDHEFVANGVVVHNCLGKFHPHGDTAVYDALVRMAQDFSMRYPLIDGQGNFGSI 545

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            DGDS AA RYTEAR+++++  +L+ +++D VDFR  ++E  +EP V P++FPNLL NG++
Sbjct: 546  DGDSQAAMRYTEARLSKISIELLKDIEKDTVDFRPNFDESLTEPEVLPARFPNLLVNGSA 605

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GIAVGMAT+IP HN++E+C+A   ++D+ E    +LL+++ GPDFPTG  I+   E++ +
Sbjct: 606  GIAVGMATNIPPHNLKEVCQAVKYMVDHEEAETHELLQFVKGPDFPTGAEIINP-ENLKK 664

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
             Y  GRG   +RA+  +EEV +    IV+TE+PYQV K+ LI++IA+L+  K+I  + DI
Sbjct: 665  IYETGRGSVTIRAKHTIEEVRKK-TAIVITELPYQVNKAALIKQIADLVKEKKIDGISDI 723

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            RDES  +   V+    R   P++++  ++  + ++T F  NM  L     P+++ L   L
Sbjct: 724  RDESDREGIRVVIELKRDATPEVVLNKLYKFTPLQTNFNFNMIALV-NGEPKLLNLKTYL 782

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMV 418
            KE++  RREV+ R+++  ++  + R+ IL+GL IA  NI+ +I I+R+ + P   + ++ 
Sbjct: 783  KEFIEFRREVILRKTTHELKKAEARLHILEGLKIALTNIERVIEIVRSSESPNIAQELLE 842

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
              F L++ Q  AIL+++L+ L  LE  +I SE + L  + E    +L++ ++Q   I  +
Sbjct: 843  KEFGLSQKQSKAILDMKLQRLTGLEREKIDSEYEALEKDIEYYRFVLSNREEQKRLIKED 902

Query: 479  IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
            I E+ + +                  +     +  +       +  ++    ++      
Sbjct: 903  IDEIIKNYGDERKTAIVSKESEIDIESMIEEEEVVIFLTHKGFIARTSAKSYKTQGRSGT 962

Query: 539  DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
             +  +  +EGD +K  + A + D +L+ +  GK Y L A  +           +   L  
Sbjct: 963  GVRGIRTREGDFVKDVITASSKDYLLIFTNQGKVYWLKAYEIPKTEKSTRGQSIRNFLPG 1022

Query: 599  N------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
                     I+    +     +  V+ +G       SE       G   + +   +++  
Sbjct: 1023 MSGAEVVSRIIPVKDFSEKKDIFFVTQRGYVKRTSLSEFSNPRSTGINAINLEPGDRLIY 1082

Query: 653  VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            V  V   D++ ++ +  + + F +  + +M R  +GV+     +            + + 
Sbjct: 1083 VGLVEEKDNILLISKGGRAIRFHVQDVRQMGRSARGVKGMLLDEEDRIMAGTVVQPDDVY 1142

Query: 711  WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + Y +        L +RGG G +  K   ++GK   +
Sbjct: 1143 LLIVMEKGYGKRVLLSEFPLQRRGGKGLIAAKLSEKTGKIADA 1185



 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 36/71 (50%), Positives = 50/71 (70%)

Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
          E +  VS+   +++ YL YA+S I  RA+PD+RDG KPVHRRI+++M ++GL     +KK
Sbjct: 2  EKIIPVSIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLYPDKPYKK 61

Query: 75 SARIVGEVIGK 85
          SARIVGE   K
Sbjct: 62 SARIVGECFVK 72



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 5/174 (2%)

Query: 534  KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
               S  ++A++ + GD L         D ILL+S  G+A      ++         ++ +
Sbjct: 1063 NPRSTGINAINLEPGDRLIYVGLVEEKDNILLISKGGRAIRFHVQDVRQMGRSARGVKGM 1122

Query: 594  IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
            +    ++ +    V      LL+V  KG    V  SE     R GK  +     EK   +
Sbjct: 1123 LLDEEDRIMAGTVVQPDDVYLLIVMEKGYGKRVLLSEFPLQRRGGKGLIAAKLSEKTGKI 1182

Query: 651  KLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               + +  +  V +V  N K++  +   +P  SR  +GVR+Q      +   + 
Sbjct: 1183 ADAITLKNEEPVIIVSRNGKIIRVNSSDVPVYSRYTRGVRIQKLSKEDVVVSVS 1236


>gi|56807930|ref|ZP_00365752.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Streptococcus pyogenes M49 591]
          Length = 759

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 383/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  
Sbjct: 301 ELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIE 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+++     S +   L  +  ++ 
Sbjct: 478 ----RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT+ +LL +T G     P   L   R       L   +++          
Sbjct: 534 DELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           D          + V+  G     +  E+        K   ++K+  + +++  +  V  +
Sbjct: 594 DIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V +N   L FS  ++P    +  GV+  + K+                 +    R 
Sbjct: 654 DLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDDSLASAFAVTSNSFFVL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 SLKRMAVDDIPQTSRANRGLLVLRELK 738


>gi|227551203|ref|ZP_03981252.1| DNA topoisomerase IV subunit A [Enterococcus faecium TX1330]
 gi|293377174|ref|ZP_06623382.1| DNA topoisomerase IV, A subunit [Enterococcus faecium PC4.1]
 gi|227179671|gb|EEI60643.1| DNA topoisomerase IV subunit A [Enterococcus faecium TX1330]
 gi|292644194|gb|EFF62296.1| DNA topoisomerase IV, A subunit [Enterococcus faecium PC4.1]
          Length = 816

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 211/754 (27%), Positives = 395/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR     K    +    F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKEAESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  +    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 481 ----RLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + +G T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIVNGLLVLADGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|257430712|ref|ZP_05607094.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257278840|gb|EEV09459.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           68-397]
          Length = 800

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 213/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFILNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|332202711|gb|EGJ16780.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA41317]
          Length = 811

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 209/737 (28%), Positives = 381/737 (51%), Gaps = 27/737 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ + A+ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDVAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S     L  +  ++ D L     A T
Sbjct: 473 TAKAIEIDIASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L   R           + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
               +  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--TQRGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPKGFP 745
               R   G  V +   
Sbjct: 711 LATSRAKRGLQVLRELK 727


>gi|319745152|gb|EFV97475.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus agalactiae
           ATCC 13813]
          Length = 819

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 231/747 (30%), Positives = 395/747 (52%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+  ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVAVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +  
Sbjct: 241 RTAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  
Sbjct: 301 ELKKEADETIVLNYLFKYTDLQVNYNFNMVAIDD-YTPKQVGLSRILTSYIAHRREIIIA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFAN--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
              RR+   E           ++I +E   V ++  G+++     S +   +  L  +E 
Sbjct: 477 --TRRSELQE-LAETIEIDTASLIIEEDTYVSVTRGGYVKRTSPRSFNASTVDELGKRED 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L    +A TT  +L+ +  G     P   L   R           L++   N++I+ A
Sbjct: 534 DELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIYA 593

Query: 606 FVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGD 659
            + D   K     V+S G     E  EI    T K KT    K+ S E+ +  V  +  +
Sbjct: 594 ELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKSVEDYVVTVAPIQLE 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   L FSI+ +P +  +  GV+  + KD              L  +    R 
Sbjct: 654 DVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDSDHIVSAFIANTTSLYLLTH--RG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +     +     R   G  V +   
Sbjct: 712 SLKRMAIDVIPTTSRANRGLQVLRELK 738


>gi|94988399|ref|YP_596500.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS9429]
 gi|94992281|ref|YP_600380.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS2096]
 gi|94541907|gb|ABF31956.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS9429]
 gi|94545789|gb|ABF35836.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS2096]
          Length = 821

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 211/750 (28%), Positives = 383/750 (51%), Gaps = 26/750 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +   N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   
Sbjct: 1   MNMSNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RY
Sbjct: 61  YRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT I
Sbjct: 121 TEVRLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   
Sbjct: 181 PPHNLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      
Sbjct: 240 VRSRTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR+++
Sbjct: 300 IAIELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           +  RS F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q 
Sbjct: 359 IIERSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+ 
Sbjct: 419 EAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHF 545
                  R +  +           ++I +E   V ++  G+++     S +   L  +  
Sbjct: 479 P------RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGK 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           ++ D L     A TT+ +LL +T G     P   L   R       L   +++       
Sbjct: 533 RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEI 592

Query: 606 FVYD-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKV 656
              D          + V+  G     +  E+        K   ++K+  + +++  +  V
Sbjct: 593 LYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPV 652

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +V +N   L FS  ++P    +  GV+  + K+                 +   
Sbjct: 653 IMEDLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDDSLASAFAVTSNSFFVL--T 710

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            R   +           R   G LV +   
Sbjct: 711 QRGSLKRMAVDDIPQTSRANRGLLVLRELK 740


>gi|283470570|emb|CAQ49781.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 800

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 214/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ I+ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVIIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|257896174|ref|ZP_05675827.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com12]
 gi|257832739|gb|EEV59160.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com12]
          Length = 817

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 211/754 (27%), Positives = 395/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR     K    +    F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKEAESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  +    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 482 ----RLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 598 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 657

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + +G T  + 
Sbjct: 658 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIVNGLLVLADGDTPIVI 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 718 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 751


>gi|313623959|gb|EFR94061.1| DNA topoisomerase IV, A subunit [Listeria innocua FSL J1-023]
          Length = 818

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 206/764 (26%), Positives = 385/764 (50%), Gaps = 30/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E +++ + GPDFPTGGII    + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPTGGIIQG-IDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +     V    + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNF-NMVAIHNKRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + + + 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE   L  +   ++ +L    +    +  E+ ++
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKELAEQISVLEKILGDEAELVAVLKSELADI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S    +
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDL 596
            + L  KE D        ++ D +LL +  G     P   L   R          L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTNKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +    D      + L V+  G       +        K    +K+   +++  
Sbjct: 589 SAGEEIRSVIAIDSFTEQKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKE-DELLN 647

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS-DVICFKICEGL 709
           V  + G + + +  +N   L + I +IPE   R  GV+  + K G +    +     +  
Sbjct: 648 VYLIDGTEDIFLATKNGYGLRYPIAEIPESGARTAGVKAINLKQGDVVIGGVVLTPNDNK 707

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
             + +  R   +           R   G L+ +    +  +F+ 
Sbjct: 708 HILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPHRFIG 751


>gi|224369431|ref|YP_002603595.1| DNA topoisomerase IV subunit A [Desulfobacterium autotrophicum
           HRM2]
 gi|223692148|gb|ACN15431.1| ParC [Desulfobacterium autotrophicum HRM2]
          Length = 753

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 264/752 (35%), Positives = 436/752 (57%), Gaps = 23/752 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N+     E  +        E  YL Y++  I +RA+P + DG KPV RRI++AMS++G
Sbjct: 1   MKNNELTSLEGFEKQPFDTFAETAYLNYSMYVILDRALPYIGDGLKPVQRRIVYAMSQLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V LAQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSSSSKHKKSARTVGDVLGKYHPHGDSACYEAMVLLAQPFSCRYPLLDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R++  A+++L  +D  A ++   ++   +EP + P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTESRLSTYADILLSELDLGATEWTPNFDGTLNEPTLLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+D+P+ ++++L E+I GPD+PT   I+     I + Y+
Sbjct: 181 VGMATDIPPHNLTEVAQALVHLLDHPDATVDQLCEFIQGPDYPTEAEIITPLSEIRQMYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  ++RA++ V++       IVVT +P+     +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGNGRIKMRAKFHVDDGD-----IVVTALPHHSSGEKILEQIAAQMQAKKLPMVVDLRDE 295

Query: 305 SAEDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S  +    ++       +   LM+ +F  +D+E  + +NMN++ +   P+V PL  IL E
Sbjct: 296 SDHEEPTRLVIIPKARTNTTALMDHLFATTDLERSYRINMNMIGINGRPEVKPLQVILSE 355

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WLA R + + +R S R+  ++ R+ +L+GLL A+LNIDEIIAIIRN D+PKPV++ RF+L
Sbjct: 356 WLAFRIDTVRKRISHRLDKVNDRLHLLEGLLTAFLNIDEIIAIIRNSDEPKPVLMERFNL 415

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q  AIL ++LR+L KLEE +I++E D+L +E+++++ +L S K+    I  EI+   
Sbjct: 416 SDRQATAILEIKLRNLAKLEEIKIQAEKDSLDSERQQLEKILASDKRLRTLIKREIQADA 475

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           +          RR+   E   A +A  ++ +I+ EP+TV++S  GW R+ K H +D+  L
Sbjct: 476 KTHGD-----LRRSPIFERKEA-EAFSEEEVIQIEPMTVILSKNGWARTAKGHDIDIEKL 529

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FK GD L +     +    +   + G++Y++    L S R  GE +   + L     I+
Sbjct: 530 KFKFGDDLLVTAPTMSNRPAVFFDSSGRSYSIATHTLASARTMGEPLTGRLTLKPENHII 589

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DH 660
           +    +     L+ ++ G  FI   S +IA +R GK  L V    +      +     D 
Sbjct: 590 SLVTGEDDDLFLLYTNTGFGFITRFSNLIAKSRTGKAVLTVEEFSEFMAPEPLKNPETDL 649

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFK-ICEGLTWIDS 714
           +A V  + +L+IF + ++P M +GKG ++       +S      +   K + EG   +  
Sbjct: 650 LAAVTTSGRLIIFPVREMPIMEKGKGNKIIGIPKNQLSVPGTERIKTLKLLPEGAAIVIY 709

Query: 715 AGRSYNR-SENDLLGWLGKRGGVGSLVPKGFP 745
           AG+ + + S  +   +  KRG  G  +P+GF 
Sbjct: 710 AGKHFLKLSVGNQDNYRSKRGYRGKKLPRGFQ 741


>gi|257887680|ref|ZP_05667333.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733]
 gi|257823734|gb|EEV50666.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733]
          Length = 817

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/754 (28%), Positives = 395/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR     K    +    F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E +NL+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESENLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  +    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 482 ----RLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 598 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 657

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + +G T  + 
Sbjct: 658 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIVNGLLVLADGDTPIVI 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 718 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 751


>gi|16800394|ref|NP_470662.1| DNA topoisomerase IV subunit A [Listeria innocua Clip11262]
 gi|16413799|emb|CAC96557.1| parC [Listeria innocua Clip11262]
          Length = 818

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 205/764 (26%), Positives = 384/764 (50%), Gaps = 30/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E +++ + GPDFPTGGII    + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPTGGIIQG-IDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +     V    + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNF-NMVAIHNKRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + + + 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE   L  +   ++ +L    +    +  E+ ++
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKELAEQISILEKILGDEAELVAVLKSELADI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S    +
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDL 596
            + L  KE D        ++ D ++L +  G     P   L   R          L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLILFTNKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +    D      + L V+  G       +        K    +K+   +++  
Sbjct: 589 SAGEEIRSVIAIDSFTEQKRFLFVTKNGMTKQSTITNYKPQRYSKSMMAIKLKE-DELLN 647

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS-DVICFKICEGL 709
           V  + G + + +   N   L + I +IPE   R  GV+  + K G +    +     +  
Sbjct: 648 VYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLKQGDVVIGGVVLTPNDNK 707

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
             + +  R   +           R   G L+ +    +  +F+ 
Sbjct: 708 HILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPHRFIG 751


>gi|297562241|ref|YP_003681215.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846689|gb|ADH68709.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 828

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 222/768 (28%), Positives = 379/768 (49%), Gaps = 38/768 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S     + E +  + +   +   +L YA S I +RA+PD RDG KPV RRI++ M+EMGL
Sbjct: 6   SRPPEDLAEKIIDIDVSEEMRGSFLEYAYSVIYQRALPDARDGMKPVQRRILYQMNEMGL 65

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS- 125
                  K AR+VG+V+G+LHPHGD ++YD+LVRL+QPF  R PL+ G GNFG++ GD  
Sbjct: 66  RHDRGHVKCARVVGDVMGRLHPHGDTAIYDALVRLSQPFAMRVPLVDGHGNFGSLGGDDA 125

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ + AE ++  +DE+ VDFR  Y+ +++EP V P+ FPNLL NG SGIAV
Sbjct: 126 PAAMRYTEARLDRAAEQLVASIDENVVDFRPNYDGQETEPEVLPAAFPNLLVNGASGIAV 185

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ E+  AA  LI +PE ++E+L E++ GPD PTGG IV   + I ++YR 
Sbjct: 186 GMATNMAPHNLGEVVAAARHLIAHPEATLEELTEFVPGPDLPTGGTIV-GLDGIRDAYRS 244

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F+ RA   +E+V      +VVTE+PY V   ++I +I EL+ +K++  + D++D +
Sbjct: 245 GRGTFKTRATVSIEKVSARRTGLVVTELPYSVGPEKVISRIKELVQSKKLQGISDLKDLT 304

Query: 306 AEDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++       +P+ ++E ++ L+ ME  F +N   L     PQ + L  +L+ +
Sbjct: 305 DRTQGLRLVIELKNGFNPEAVLEELYRLTPMEESFGINNVALVD-GQPQTLGLRELLEVY 363

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + HR +V+ RRS FR      R+ ++ GLL+A L+ID +I++IR  +     +  ++  +
Sbjct: 364 VNHRLDVVRRRSEFRRAKRQERLHLVDGLLVALLDIDRVISLIREAEDTAAARESLMGAY 423

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q   IL   LR L + +  ++++E D L  E + + ++L S K+    ++ E+ +
Sbjct: 424 DLSEIQARYILETPLRRLTRFDRMELETERDKLNKEVDALTAVLESDKKLRRLVSKEMGD 483

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V + F+       RRT   E     ++ +    +  +P  V++   G I   K  SV   
Sbjct: 484 VAKEFATP-----RRTQLRESDGVARSAVIPLEMADQPCHVLMGVHGAIGRSKGPSVPRV 538

Query: 542 ALHFKEGDSLKIA-LHAHTTDRILLLSTDGKAYTLPAGN---------LLSGRGHGEAIQ 591
               +         +   +   + L++  G+   +P                   G  + 
Sbjct: 539 YEGLRTRHDAVHVSVPTTSRSAVGLVTDLGRMIRVPVVELPELPDEGGDSPPLASGLDVS 598

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + L+ ++ +V+    D++     + +  G    V         +     + +  ++++
Sbjct: 599 EFVQLDGDERVVSVVSMDASGPGFALGTRGGVVKRVSPD--YPPNKDDFEVVALKDDDRV 656

Query: 651 KLV--VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS--------- 698
             V  +    + +A +    +LL FS   +    R   GV      +G            
Sbjct: 657 VGVTQLSTGEEDLAFITSEAQLLRFSASAVRPQGRPAGGVAGVRLSEGARVLWFGAVPSP 716

Query: 699 -DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            D +   +      ++       +        +  R   G    +   
Sbjct: 717 QDSVVVTVSGSSGALEGTQAGSAKVTPFEAYPVKGRATGGVRCHRYLK 764


>gi|317125073|ref|YP_004099185.1| DNA topoisomerase IV subunit A [Intrasporangium calvum DSM 43043]
 gi|315589161|gb|ADU48458.1| DNA topoisomerase IV subunit A [Intrasporangium calvum DSM 43043]
          Length = 818

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 223/775 (28%), Positives = 375/775 (48%), Gaps = 39/775 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L Y+ S I  RA+PD RDG KPV RRI++  +E+G+
Sbjct: 8   TPPPEDFEEKIVGIDVEEEMQNAFLEYSYSVIYSRALPDARDGLKPVQRRILYGANELGV 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                  KS RIVGEV+GK HPHGD ++YD+LVR+AQPF  R PLI G GNFG++D D  
Sbjct: 68  RPDRGHVKSQRIVGEVMGKYHPHGDTAIYDALVRMAQPFTLRLPLIDGHGNFGSLD-DGP 126

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+ + A L++ G+DE+ VDF   Y++   +P V P+ FPNLL NG SGIAVG
Sbjct: 127 AAARYTEARLAESALLMVSGLDENTVDFVPNYDDTQYQPEVLPAAFPNLLVNGASGIAVG 186

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++  HN+ E+  AA  LI NP  S+++L++++ GPD P GG IV   E I ++Y  G
Sbjct: 187 MATNMAPHNLIEVIGAARHLIANPSCSLDELMKFVPGPDLPGGGRIV-GLEGIRDAYLTG 245

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG FR RA   +E +      IVVTE+PY V   ++IEKI +L+ +K++  + D++D S 
Sbjct: 246 RGSFRTRATARIENITPRRKGIVVTELPYLVGPEKVIEKIRDLVQSKKLQGISDLKDLSD 305

Query: 307 ED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++       +PD ++E ++ L+ ME  F +N   L     P+ + L  +L+ ++
Sbjct: 306 RGHGLRLVIEVKNGFNPDAVLEQLYRLTPMEENFGINNVALV-EGQPRTLGLKQLLQVYV 364

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R +V+ RR+  R+   + R+ +++GLLIA ++IDE+I +IR+ D     K  ++  F 
Sbjct: 365 DFRTDVVRRRTEHRLAKREERLHLVEGLLIAIVDIDEVIQVIRSSDDAATAKTRLMDVFD 424

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q   IL+L+LR L +    +++SE   L  + E++ +LL S +     ++ E+ EV
Sbjct: 425 LSDPQATYILDLQLRRLTRFSRIELESEKSELERQIEELRALLESDRLLLKLVSTELAEV 484

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKSHSVDL 540
            +          RRT   E S   + T     +E   +P  V++S+ G +          
Sbjct: 485 AKKHGTP-----RRTVLLESSGQARPTTTATPLEITDDPCWVLLSSTGLLARTVGPEPVT 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--------EAIQL 592
           +       D+L  A+       + L++T G+   L A  L +               +  
Sbjct: 540 AEGSRSRHDALVGAVRTTARGELGLVTTSGRMVRLSALELPTLPPTNGAPSLGGGAPLAA 599

Query: 593 LIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +DL  +++ +T     +   ++ + ++ G    V             + + +   +++ 
Sbjct: 600 YVDLAKDEEPLTIVPIGAEAPVVALGTASGVVKRVSPD---TPKGTDWSLISLKDGDRVV 656

Query: 652 LVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
                  D   +  +  + +LL F+   +    R   G+       G  +          
Sbjct: 657 GAAVADRDDLDLVFITSDAQLLRFAAKTVRPQGRSAGGMAGVKLAAGASAVFFGVVDPSS 716

Query: 709 LTWIDS----------AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +                +           R   G    +        + +
Sbjct: 717 DGVVVTSAGSSGALPGTEAGTLKVTPYSEYPPKGRATGGVRCHRFLKGEDTLVVA 771


>gi|257425421|ref|ZP_05601846.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428081|ref|ZP_05604479.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257433472|ref|ZP_05609830.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436313|ref|ZP_05612360.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903935|ref|ZP_06311823.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905700|ref|ZP_06313555.1| DNA topoisomerase IV A subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908668|ref|ZP_06316489.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910937|ref|ZP_06318740.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914144|ref|ZP_06321931.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282924249|ref|ZP_06331923.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958119|ref|ZP_06375570.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293526724|ref|ZP_06671409.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297591170|ref|ZP_06949808.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus MN8]
 gi|257271878|gb|EEV04016.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274922|gb|EEV06409.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257281565|gb|EEV11702.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284595|gb|EEV14715.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313636|gb|EFB44029.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|282322212|gb|EFB52536.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325542|gb|EFB55851.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327486|gb|EFB57778.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330992|gb|EFB60506.1| DNA topoisomerase IV A subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595553|gb|EFC00517.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790268|gb|EFC29085.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920796|gb|EFD97859.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297576056|gb|EFH94772.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus MN8]
 gi|315194272|gb|EFU24665.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 800

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|22537311|ref|NP_688162.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae 2603V/R]
 gi|22534181|gb|AAN00035.1|AE014244_12 DNA topoisomerase IV, A subunit [Streptococcus agalactiae 2603V/R]
          Length = 819

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 231/747 (30%), Positives = 395/747 (52%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+  ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVAVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +  
Sbjct: 241 RTAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  
Sbjct: 301 ELKKEADETIVLNYLFKYTDLQVNYNFNMVAIDD-YTPKQVGLSRILTSYIAHRREIIIA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFAN--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
              RR+   E           ++I +E   V ++  G+++     S +   +  L  +E 
Sbjct: 477 --TRRSELQE-LAETIEIDTASLIIEEDTYVSVTRGGYVKRTSPRSFNASTVDELGKRED 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L    +A TT  +L+ +  G     P   L   R           L++   N++I+ A
Sbjct: 534 DELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIYA 593

Query: 606 FVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGD 659
            + D   K     V+S G     E  EI    T K KT    K+ S E+ +  V  +  +
Sbjct: 594 ELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKSVEDYVVTVAPIQLE 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   L FSI+ +P +  +  GV+  + KD              L  +    R 
Sbjct: 654 DVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDRDHIVSAFIANTTSLYLLTH--RG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +     +     R   G  V +   
Sbjct: 712 SLKRMAIDVIPTTSRANRGLQVLRELK 738


>gi|296134958|ref|YP_003642200.1| DNA topoisomerase IV, A subunit [Thiomonas intermedia K12]
 gi|295795080|gb|ADG29870.1| DNA topoisomerase IV, A subunit [Thiomonas intermedia K12]
          Length = 777

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 271/784 (34%), Positives = 427/784 (54%), Gaps = 44/784 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M        +   E++  +++L       YL YA+S +K RA+PD+ DG KPV RRI++A
Sbjct: 1   MSEQATLEFDNRPEDDTDSLALGDYARRAYLDYAISVVKGRALPDVCDGLKPVQRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  MGL   A   KSAR+VG+V+G+ HPHGDQ+ YD+LVRL+Q F QRYPLI GQGNFG+
Sbjct: 61  MWRMGLTADAKPVKSARVVGDVLGRFHPHGDQAAYDALVRLSQDFAQRYPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+  +A L+L  +D    DF   Y+   +EP + P++ P +L NG 
Sbjct: 121 RDGDGAAAMRYTEARLAPIARLLLGEIDAGTADFIPNYDGSTTEPRLLPARLPFVLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT IP+HN++E+  A +AL+ NP + +   L  + GPDF TGG ++ S + I 
Sbjct: 181 SGIAVGMATEIPAHNLREVASACVALLKNPRLELADALALMPGPDFATGGQLISSPQDIA 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL--- 297
            +Y +GRG  +VRARW VEE+ RG W +V+ E+P+      ++E+I EL   K  P    
Sbjct: 241 AAYAVGRGSLKVRARWTVEELARGQWQLVINELPHGTSTQMVLEEIEELSNPKIRPGKKA 300

Query: 298 ---------------LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                          L+ +RDES  +  VR+V  P++  +D    + ++   + +ET  P
Sbjct: 301 LAPEQIALKATLLNLLDTVRDESGREAAVRLVFEPRSSRIDQAEFVNTLLARTSLETSVP 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +N+ ++     P+   L  IL+EW+A+RR+ + RRS  R++ +D R+ IL+G     LN+
Sbjct: 361 INLVMIGTDGKPRQKGLMDILREWVAYRRDTVQRRSKHRLEQVDARIHILEGRQQVLLNL 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I  IRN D P+P +++RF LTE Q D IL++RLR L +LE  +I  EL     E  +
Sbjct: 421 DEVIETIRNSDDPRPALMARFDLTELQADDILDMRLRQLARLEAIRIDKELAAQRTEAAE 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL   K    +I  EI    + F        RRT      +A++  + +  +  E +
Sbjct: 481 LQKLLADEKAMTRRIISEIEADAKQFGD-----DRRTLI----QAEQRAVAEVKVVDEAV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TV++S +GW+R  K H + LSAL FK GD+L       + D +++L +DG+AY++   +L
Sbjct: 532 TVIVSQKGWLRVQKGHGLVLSALTFKPGDALYATFECRSVDPLVVLGSDGRAYSMDVADL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG G+ +   I+L      +       T  LL+ +++G  F+   S+ ++  R GKT
Sbjct: 592 PGGRGDGQPVTSFIELAPGTQALHYLAGARTTALLLWTAQGFGFVTHISDALSRQRAGKT 651

Query: 641 FLKVSSEEKMKLVVKVTGD-------HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
           F+ +   + ++  + +  D        +A +  + +LL++   ++  ++R G+G+ L + 
Sbjct: 652 FVTLEDGDTLQRPLVLDTDADGSPVGRLATLSADGRLLLYPAAEVKTLARGGRGITLMAL 711

Query: 693 K-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLL-----GWLGKRGGVGSLVPKGFPR 746
                +  V           +   GR        L       ++GKR   G  + +   +
Sbjct: 712 DAKETLQSVAQLAAERDALLVSGKGRGGTERSATLSAAQQTAYVGKRARRGRKL-EVTFK 770

Query: 747 SGKF 750
             + 
Sbjct: 771 PDRL 774


>gi|22299160|ref|NP_682407.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
 gi|22295342|dbj|BAC09169.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
          Length = 799

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 230/762 (30%), Positives = 375/762 (49%), Gaps = 42/762 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L    V    L   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM E+GL   
Sbjct: 8   DLLTSGQVIPTPLHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMYELGLTPD 67

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F+K AR+VG+V+GK HPHGDQ+VY++LVRL QPF  RYPL++G GNFG+IDGD  AA 
Sbjct: 68  RPFRKCARVVGDVLGKYHPHGDQAVYEALVRLVQPFSSRYPLLAGHGNFGSIDGDPPAAM 127

Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +A  ++LQ + E  VDF   ++    EP+V P++ P LL NG++GIAVGMA
Sbjct: 128 RYTETRLAAIAHRMLLQNISEAIVDFAPNFDSSQEEPLVLPAQLPILLLNGSTGIAVGMA 187

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +A +ALID P +S+ +LL Y+ GPDFPTGG+IVE    ++ +YR GRG
Sbjct: 188 TNIPPHNLGEVVDALIALIDRPHLSLGELLTYLPGPDFPTGGVIVEG-AGLLRAYRTGRG 246

Query: 249 GFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              +R    +E++  G        IVVTE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 247 TITLRGVATLEDMAPGRGRHRRQGIVVTELPYQVNKAAWIEKVADLVNQGRLEGIADLRD 306

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R      L+E ++ L+ ++  + +N+  L  G  P+ + L  IL E
Sbjct: 307 ESDREGLRVVIELKRDAPAAQLLEQLYHLTALQVTYGINLMALV-GNQPRQLSLKEILSE 365

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSR 420
           +L  R + L R+    +     R  ++ GLLI+   ++++I I+R+    +      + R
Sbjct: 366 FLQFREQTLLRQYRHDLATAQARQHVVTGLLISLNAVEQVIEIVRSAADARAAQSELMIR 425

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L++ Q  A++ + LR L + E  +++ E   L      + +L++   ++   +  E+R
Sbjct: 426 LGLSDRQASALIAMPLRRLTQQERQELEREQAVLQGRIAHLQTLIHQRPERLKALKKELR 485

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           ++K+ F         R T                                  +       
Sbjct: 486 QLKKEFGDPRLTQILRET-----------------PAPEAVPDCGGDSLWLEMSYRGDLP 528

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT-----LPAGNLLSGRGHGEAIQLLID 595
                   + L +   A T+DR+ + +  GK Y      LP  +   G      + LL +
Sbjct: 529 LQTWRPWSEPLPLGFSAQTSDRLWVFTESGKVYPLSVERLPVTSHREGDRDQPLLTLLPE 588

Query: 596 LNHNQDIVTAFVYDST-CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
               + +++     +T  KL++++ +G   ++  S +     +G    K+ + + +  V+
Sbjct: 589 SAQGETLLSVIPSQATADKLILLTRQGRIKVIPSSSLQNLRGRGLQLTKLKAGDTLGWVL 648

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEGLT 710
              GDH+ +     ++  F +  IP + R       VRL          V    + E   
Sbjct: 649 PAQGDHLVLATSRGRVFHFFLPDIPVLGRLHQGQAAVRLSR----QEILVGAIALSEHEN 704

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            I        +     L  +   G +G L      +  +   
Sbjct: 705 VILVTASGLGKQVPLSLIEVVPLGHLGQLAIPLGQKLDRLAG 746


>gi|269940853|emb|CBI49235.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 800

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/756 (28%), Positives = 396/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +I +       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIHSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|313619190|gb|EFR90963.1| DNA topoisomerase IV, A subunit [Listeria innocua FSL S4-378]
          Length = 762

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 206/764 (26%), Positives = 384/764 (50%), Gaps = 30/764 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E +++ + GPDFPTGGII    + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPTGGIIQG-IDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +     V    + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNF-NMVAIHNKRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + + + 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE   L  +   ++ +L    +    +  E+ ++
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKELAEQISVLEKILGDEAELVAVLKSELADI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S    +
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDL 596
            + L  KE D        ++ D +LL +  G     P   L   R          L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTNKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +    D      + L V+  G       +        K    +K+   +++  
Sbjct: 589 SAGEEIRSVIAIDSFTEQKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKE-DELLN 647

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS-DVICFKICEGL 709
           V  + G + + +   N   L + I +IPE   R  GV+  + K G +    +     +  
Sbjct: 648 VYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLKQGDVVIGGVVLTPNDNK 707

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
             + +  R   +           R   G L+ +    +  +F+ 
Sbjct: 708 HILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPHRFIG 751


>gi|28378500|ref|NP_785392.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum WCFS1]
 gi|254556714|ref|YP_003063131.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum JDM1]
 gi|300767446|ref|ZP_07077358.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308180657|ref|YP_003924785.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28271336|emb|CAD64241.1| topoisomerase IV, subunit A [Lactobacillus plantarum WCFS1]
 gi|254045641|gb|ACT62434.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum JDM1]
 gi|300495265|gb|EFK30421.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308046148|gb|ADN98691.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 816

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 216/751 (28%), Positives = 381/751 (50%), Gaps = 29/751 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM++ G  F  AF+KS
Sbjct: 7   KIQELTLEDVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNQDGNTFDKAFRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD AAA RYTEAR
Sbjct: 67  AKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+  VD    +++ + EP V P++FPNLL NG +GI+ G AT IP HN
Sbjct: 127 LSKIAGEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A L L+++P+ ++E L++++ GPDFPTGG I++    I ++Y  GRG   VR+R
Sbjct: 187 LSEVIDAILFLMNHPKATLEDLMDFVKGPDFPTGG-IIQGLAGIKQAYETGRGRIVVRSR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +  +      I V+EIPY+V K++L++KI E+ I K+I  + ++RDES      V+  
Sbjct: 246 TKIVPLKGNKSQIEVSEIPYEVNKAQLVKKIDEIRILKKIEGIAEVRDESDRQGLSVVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R ++ + ++  +   +D++  +  NM  +   R P+ + L  IL  +L H+R+V+ RR
Sbjct: 306 LKRDVNAEGILTYLLKNTDLQITYNFNMVAIYHQR-PEHVGLKTILTAYLEHQRDVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + F +Q    R  I++GL+ A   +D++I  IR     K    +   +F  +E Q +AI+
Sbjct: 365 TQFNLQKAMDRQHIVQGLIKAMSILDQVIKTIRGSKDKKDAKQNLVSQFDFSEIQAEAIV 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++L  L   +  Q++ E   L         +L   K+    +  E++ V++ +  S   
Sbjct: 425 TMQLYRLTNTDVTQLEKESAELAKAIATYQLILAEPKELDKVLRRELKAVQKAYPTS--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGD 549
              R T  +    +     + +I +E + V+IS+ G+I+     S    +      K+ D
Sbjct: 482 ---RLTEIQNEIQELKVKTEVVIPQEDVIVMISHDGYIKRTSLRSYSASEPDDNGLKDED 538

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
                    T D +++ +  G     P         +  GE I   I L  N+ I   + 
Sbjct: 539 YPIYLAKNSTLDHLMMFTNMGHLIYRPIYEIADAKWKDTGEHISQTIGLAENERITWVYS 598

Query: 608 YD---STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSEEKMKLVV----KVT 657
           ++   +T K LV +S G       ++         +   F+K+ S++   + V       
Sbjct: 599 FENLKATGKFLVATSDGYIKQTAFADYTPGRTYKTRASQFIKMKSDDATVVTVEYLPAAP 658

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + ++ ++   L + + ++P +  +  GV+    +D  I         +         
Sbjct: 659 TGTLILITQHGYGLRYDLSEVPTIGAKAVGVKSMDLRDDAIVRATIA--ADDDLIAMITQ 716

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +        +  R   G  V +    +
Sbjct: 717 RGSFKKMKVADLPVTSRARRGVQVLRELKNN 747


>gi|293501172|ref|ZP_06667023.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291096177|gb|EFE26438.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 58-424]
          Length = 800

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|282919066|ref|ZP_06326801.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282316876|gb|EFB47250.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C427]
          Length = 800

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|282920623|ref|ZP_06328344.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9765]
 gi|282594285|gb|EFB99272.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9765]
          Length = 800

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 214/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|118647919|gb|ABL09947.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299]
          Length = 803

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 223/713 (31%), Positives = 371/713 (52%), Gaps = 31/713 (4%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ +   A +KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PLI GQGNFG+
Sbjct: 1   MHDLNMSARAPYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTE+R T+++E IL+ +D+D V+F   Y++   EP V P++ P LL NG+
Sbjct: 61  VDGDSAAAMRYTESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGS 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT IP HN+ E+ +A + ++DNPE + ++L+E+I GPDFPTGG I   R  I+
Sbjct: 121 EGIAVGMATKIPPHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIF-GRRGII 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG  R+RA+  + E       IV+ E+PYQV K+RLIE IA L   K+I  + +
Sbjct: 180 DAYNTGRGRVRIRAKHHI-ETRGKKEIIVLDELPYQVNKARLIELIANLTKDKQIEGISE 238

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   V+    +    +++M +++  + MET F + + +    + P+V  L  +
Sbjct: 239 VRDESDRDGIRVVIELKKDAMSEIVMNNLYKSTPMETTFGI-ILLAVYNKEPKVFTLPEL 297

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           L  +++HR+ V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR        K  +
Sbjct: 298 LNVFISHRKTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEKL 357

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             RF L+  Q  AIL++RL  L  L+  ++++E   L+A   +++S+L S ++    I  
Sbjct: 358 ELRFGLSPIQSQAILDMRLGRLTGLQRDKLEAEYQELMAIIAELESILKSEEKLVEIIKE 417

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E++E +S             ++  +      + +I  EP+ V I++ G+++      
Sbjct: 418 ELSEIREKYS--------SKRLTDIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKS 469

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
               +       A+   + D ++     +T D ++ ++  G+ Y L    +        G
Sbjct: 470 YEKQRRGGKGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLYWLKVYRIPEGSRTAKG 529

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           +A+  LI+L  ++ I+       +D +  L   +  G       SE       G   + +
Sbjct: 530 KAVVNLINLRPDEKIMEIIPTSDFDESKSLAFFTRNGVVKRTSLSEFSNIRSNGVRAIVL 589

Query: 645 SSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDV 700
              +++      T    ++ +     + + F +++  E  R  +GVR   +K D      
Sbjct: 590 DDADEIVTAKITTPSTQYLMIFTSLGQCIRFDVEKTREQGRSTRGVRGIKFKHDTDFVVD 649

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      +  + +   +           R G G +  K   ++G  + +
Sbjct: 650 ANVVDNIEQELLTVSQKGIGKRTTVEEYRETNRAGSGVISMKLSAKTGNVVGA 702



 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 2/102 (1%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L +S  G                G  +  +       ++V A + D    L++++S 
Sbjct: 658 QELLTVSQKGIGKRTTVEEYRETNRAGSGVISMKLSAKTGNVVGAVLVDEAQDLMILTSI 717

Query: 621 GNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           G    V+   I        G   + V +++K+  + K   + 
Sbjct: 718 GKMIRVDMQTIRKAGRNTSGVIIVNVDAKDKVVSIAKCPKED 759


>gi|209523648|ref|ZP_03272202.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328]
 gi|209496053|gb|EDZ96354.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328]
          Length = 876

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 246/812 (30%), Positives = 400/812 (49%), Gaps = 71/812 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++     +   V   SL   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G
Sbjct: 1   MAKQLNFLCGEVIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG++D D 
Sbjct: 61  LTPDRPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDP 120

Query: 126 AAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE R+  +    +L  V E  VDF   ++    EP V P++ P L+ NG+SGIA
Sbjct: 121 PAAMRYTETRLAAIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALID+P++S +KL++ I GPDFPTGG IV +   I E+Y 
Sbjct: 181 VGMATNIPPHNLGEVVDGLIALIDHPDLSDQKLMQLIPGPDFPTGGEIVAT-AGIAEAYT 239

Query: 245 LGRGGFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            GRG   +R    +E+V      R    IVVTE+P+QV K+  IEK+A L+ A ++  + 
Sbjct: 240 SGRGSIVMRGVAKIEQVPTAGRKRTKNAIVVTELPFQVNKAGWIEKVAVLVNAGKLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES  +   V+    R   P++++ +++  +D+ ++F      L     P+ + L  
Sbjct: 300 DIRDESDREGIRVVIELKREATPEVVLHNLYQHTDLMSKFGAIFLALVNS-QPRQLSLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-- 417
           IL+E+L  R + L RR    +Q  +RR  ++ GLL A   +DE+I I+RN          
Sbjct: 359 ILQEFLGFREQTLLRRYRSELQIAERRALMVGGLLKALAALDEVIEILRNAPDGTSAKIS 418

Query: 418 -VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
             +R  LT  Q D IL + LR L +LE  +++ E   L A+ +++  LL+   +    + 
Sbjct: 419 LETRLDLTGEQADTILAMPLRRLTQLEGQKLQQEAAELAAQIDRLRLLLSERAELLKSLK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT--------------- 521
            E+R +K  +S         +   E       + Q+     +P                 
Sbjct: 479 KELRSLKRRYSDPRRTRIVSSEPQESPSVSVPSSQEVHPSSKPTKSKILRPQLPAVEETL 538

Query: 522 VVISNRGWIRSLKSHSVDLSALHFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           V ++ +G++R +   ++               D    +    T + +++++  GKAY L 
Sbjct: 539 VEMTLKGYVRRVTPSALSRPQSREDITIEAIDDFPVASYLTTTAETLVIINRMGKAYPLS 598

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQD----------IVTAF-------------------- 606
             ++ S       + L+  L+ +            IV AF                    
Sbjct: 599 VADIPSVSQKSRGVPLITLLSPSATKDASSRPQDLIVAAFAGAGLQSSPLRRTTDGGTSP 658

Query: 607 --VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAV 663
              +     L+++S++G       ++ +  + +G T +K+   +++    +  TGD V +
Sbjct: 659 KSAFSPETDLIMLSAEGKIKRFSGTDFMDLSARGITVMKLKDNDELSYANLAATGDQVVL 718

Query: 664 VGENRKLLIFSID--QIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLT---WIDSAG 716
                +LL   I+  QIP M R  +G       K+  +   I       L     +  + 
Sbjct: 719 ATSGGRLLRLDINSEQIPVMGRTAQGSVATRLRKNEQLVGCITLSSTGELNNQFILLVSE 778

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           + Y +  +       +RGG+G+ + +   R  
Sbjct: 779 QGYFKRISLQSLQRSRRGGIGTQMLQFHTRDD 810


>gi|148241104|ref|YP_001226261.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
 gi|147849414|emb|CAK26908.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
          Length = 820

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 227/773 (29%), Positives = 380/773 (49%), Gaps = 42/773 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E + ++SL   ++  YL YA+S I  RA+PD+RDG KPV RRI+ AM E+GL     
Sbjct: 1   MADERIVSISLHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFGCRNPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  V+   +L+ +  D VDF   ++    EP V P++ P LL NG +GIAVGMATS
Sbjct: 121 TETRLAPVSHQALLEEIGSDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A +ALI NP +S EKLL+ + GPDFPTGG+++     + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDALVALIRNPNLSDEKLLQLVPGPDFPTGGVVLTG-SGLRDTYLHGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV  G        +V+TE+PYQ+ K+  IEK+AE +   ++  + DIRDES
Sbjct: 240 PMRGVAHIEEVQPGKGRHKRNAVVITELPYQLSKAGWIEKLAEQVNDGKVAGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R  +P+ ++  +   + ++  F   +  L     P  + L  +L+++L
Sbjct: 300 DRDGMRVVVELRRDANPEQVLAQLHKRTALQNNFGAILLALV-NGQPIQLSLRQMLQQFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            +R   + RR+ + ++  + R+E+++GL+ A  ++ ++I +I++       K  +     
Sbjct: 359 EYRELTMMRRTRYALRRCEERLEVVEGLIKALDDLAKVIQMIQDARDAASAKASLQVHLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q DA+L++ LR L  LE+  ++ EL+ L  E+ ++  LL+  K   + +  E++ +
Sbjct: 419 ISERQADAVLSMPLRRLTGLEQESLRQELEELRQEQSRLRHLLDDRKSLLDTLVSELKHL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE-------------PITVVISNRGW 529
           ++ ++       RRT   E      A    A                     ++  + G 
Sbjct: 479 RKRYATP-----RRTALQEGGDELVAQRTAAQRPNTEMLRKQALANVSSDQQLLWQSDGI 533

Query: 530 IRSLKSHSVDLSA-----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           +R +    +              G S K+ L      ++L  ++ G+   L         
Sbjct: 534 LRLVTPQVLGRLHLLDDLDFGDHGCSAKLLLPVQPEPQLLAFTSGGRVAALRWEFAAQQP 593

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           G  E           + +V   V    D    + ++SS G    +   ++   + +  T 
Sbjct: 594 GPLERFLPDSVDGQAEQVVDVLVVPPADQDFSVGLLSSDGRFKRLAGQDLRELSGRATTV 653

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGI 697
           LK+    +++ VV    GD +AV     ++L   +D   IP M R  +G  L     G  
Sbjct: 654 LKLKDGVQLQRVVMCRPGDDLAVASSTGRMLRLPVDDSTIPVMGRTAQGPVLMRLLPGES 713

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                     G   +  +     +          +RG +G +  +   R+   
Sbjct: 714 IVGAAAVAAGGDVLL-ISQLGQLKRLGIDHLRRCQRGAIGEIGLRFEQRNDAL 765


>gi|218193971|gb|EEC76398.1| hypothetical protein OsI_14033 [Oryza sativa Indica Group]
 gi|222626031|gb|EEE60163.1| hypothetical protein OsJ_13077 [Oryza sativa Japonica Group]
          Length = 872

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 225/774 (29%), Positives = 380/774 (49%), Gaps = 67/774 (8%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           +AYA+S +  RA+PD+RDG KPVHRRI++AM EMGL     F+K AR+VGEV+GK HPHG
Sbjct: 1   MAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCARVVGEVLGKFHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE- 149
           D +VY++LVR+AQ F  RYPL+ G GNFG+ID D  AA RYTE R+  V       +D  
Sbjct: 61  DSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTECRLD-VGCFFFLDIDAI 119

Query: 150 ---DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
                VDF   ++    EP + P++ P+LL NG+SGIAVGMAT+IP HN+ E+ +    +
Sbjct: 120 FIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNIPPHNLGELVDVLSVM 179

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE--EVGRG 264
           I+NPE ++++LLE + GPDFPTGG IV   + I+E+Y+ GRG   +R +  +E  +V   
Sbjct: 180 IENPEATLQELLECMPGPDFPTGGTIV-GNQGILEAYKTGRGRVVMRGKTDIETIDVKSK 238

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I++ E+PYQ  KS L+E+IAEL+  K +  + DIRDES      V+    R  DP +
Sbjct: 239 RSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSGMRVVIELKRGADPAI 298

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + +++ F  NM  +     P++M L  IL+ ++  R  V+ RR+ F++    
Sbjct: 299 VLNNLYRHTALQSSFSCNMVAILD-GQPKLMGLKEILQAFIDFRCSVIERRARFKLSQAL 357

Query: 385 RRVEILKGLLIAYLNID---EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  I++G++I   N+D   +II    N    +  ++  F L++ Q +A+L++ LR L  
Sbjct: 358 ERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKEFGLSDKQAEALLDITLRKLTS 417

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS-------------- 487
           LE  +   E  +L  E  K++ LL++ K  +  +   +  ++   +              
Sbjct: 418 LERKKFVDEAKSLSEEISKLNELLSNKKLIFQGLVDGLDYLRAEINVVIRELKLMWSLFK 477

Query: 488 ---------KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
                    K+     RR+   +   A        +I  E + +++S +G+++ +K ++ 
Sbjct: 478 LILQEATDLKNKFATPRRSFIED--SASTEVDDLDIIPNEEMLLILSEKGYVKRMKPNTF 535

Query: 539 --------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGE 588
                     S    +  D+    +   T D +L  S  G  Y+  A  +        G 
Sbjct: 536 NLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGT 595

Query: 589 AIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            +  L+ L+  + I +    +       L++++  G    V  +   A    G   ++++
Sbjct: 596 PLVQLLSLSDGERITSIVPVNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLA 655

Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             +++K V +   D  VA+  +N  +++ + +++  + R  +GV     K+G     +  
Sbjct: 656 PGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDI 715

Query: 704 KICEGLT---------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                                  +  A     +         G    VG    K
Sbjct: 716 IPATSHNMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYK 769



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 21/124 (16%)

Query: 614 LLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVA 662
           LL ++  G    V  +        R G    K+  +  +  V  V         + + V 
Sbjct: 738 LLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVV 797

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK---------ICEGLTWI 712
           +V ++  +    +  I   SR  +GV L   +  G                   E  + I
Sbjct: 798 LVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKIQSASLISAAEEEEEQDPESASLI 857

Query: 713 DSAG 716
             A 
Sbjct: 858 SEAE 861


>gi|312438245|gb|ADQ77316.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 800

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|15924345|ref|NP_371879.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156979674|ref|YP_001441933.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253317050|ref|ZP_04840263.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006143|ref|ZP_05144744.2| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|258413399|ref|ZP_05681675.1| topoisomerase IV subunit A [Staphylococcus aureus A9763]
 gi|258447474|ref|ZP_05695618.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6300]
 gi|258449315|ref|ZP_05697418.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6224]
 gi|258454695|ref|ZP_05702659.1| topoisomerase IV subunit A [Staphylococcus aureus A5937]
 gi|269202978|ref|YP_003282247.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282928914|ref|ZP_06336503.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A10102]
 gi|20178000|sp|Q931S2|PARC_STAAM RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|14247126|dbj|BAB57517.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156721809|dbj|BAF78226.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257839963|gb|EEV64431.1| topoisomerase IV subunit A [Staphylococcus aureus A9763]
 gi|257853665|gb|EEV76624.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6300]
 gi|257857303|gb|EEV80201.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6224]
 gi|257863078|gb|EEV85842.1| topoisomerase IV subunit A [Staphylococcus aureus A5937]
 gi|262075268|gb|ACY11241.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589423|gb|EFB94513.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A10102]
 gi|285817033|gb|ADC37520.1| Topoisomerase IV subunit A [Staphylococcus aureus 04-02981]
          Length = 800

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 215/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  F  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|304381068|ref|ZP_07363722.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|304340377|gb|EFM06317.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|329314033|gb|AEB88446.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 800

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 214/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|222151259|ref|YP_002560415.1| topoisomerase IV subunit A [Macrococcus caseolyticus JCSC5402]
 gi|222120384|dbj|BAH17719.1| topoisomerase IV subunit A [Macrococcus caseolyticus JCSC5402]
          Length = 803

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 205/756 (27%), Positives = 403/756 (53%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN++++ L   + +R+  Y+   I++RAIPD+RDG KPV RRI+ AM   G  +   +
Sbjct: 1   MNENIQSLPLEDVIGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILFAMYAEGNTYDKNY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG VIG  HPHGD SVYD++VR++Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++++A ++L+ ++++ VDF   +++   EP+V P+ +PNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSKLANILLEDINKETVDFVQNFDDTAMEPMVLPANYPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A L +ID P IS +++++ + GPDFPTGG I+  +  I ++Y  GRG  +V
Sbjct: 181 PHNLDEVINATLKVIDKPNISTDEIMKVLPGPDFPTGG-IIMGKSGIKQAYETGRGKIQV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  +E++  G   I+++EIP++V KS L+++I EL   K++  + ++RDE+  +   +
Sbjct: 240 RGKVDIEKLRGGREEIIISEIPFEVNKSNLVKRIDELRADKKVDGIIEVRDETDRNGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + ++  ++  +D++  +  NM  +S  R P+++ +  +L  +++H++EV+
Sbjct: 300 AIELKKDANSEGILNFLYKNTDLQIAYNFNMVAISD-RRPKLLGVRDMLNSFISHQKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RRS +     ++R+ I++GL+ A   +D++I +IRN       K  ++ +F+ TE Q +
Sbjct: 359 TRRSQYDYDHAEKRMHIVEGLMKALSILDQVIKVIRNSSNKADAKHNLIHKFNFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +++E + L    +++  +LN        I  E++ +++ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEAEHEALKDRLKQLSLILNDETHLKKVIKKELKAIQKEF--- 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   A+    ++ ++  E   + I+  G+I+     S     ++ +  K
Sbjct: 476 ---KEERLSQIEEKIAEIKISKEILVPNEETVISITREGYIKRTSPRSFNASGVTDIGMK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVT 604
           E D L     ++     L+ +  G+   +P   L   R       I  ++ ++ ++ ++ 
Sbjct: 533 EDDQLLAYHESNLQHITLVFTDKGRYMYIPNHQLPEIRWKDLGTHISQIVPIDSDERVIH 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                 ++S  K+L  +  G   +    +  +    +    +K+   + +  +  VTG +
Sbjct: 593 MITVTDFNSEVKILAATRNGMIKLSSLKDFEVTRYSRPLINMKLKGNDVVNTIHVVTGSE 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           H+ VV +    L +S+ ++ +   +  GV+  + KD  +  +    I    + + +  R 
Sbjct: 653 HILVVTKQGMSLHYSLTELNDTGLKAAGVKSINLKDDDVV-ITTEIIYPESSLLIATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  L    KR   G ++ K    +    + +
Sbjct: 712 AMKKMDIQLFEEAKRAQRGLMILKELKSNPHHIIGA 747


>gi|28896140|ref|NP_802490.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes SSI-1]
 gi|28811390|dbj|BAC64323.1| putative DNA topoisomerase IV, subunit C [Streptococcus pyogenes
           SSI-1]
          Length = 821

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 212/750 (28%), Positives = 384/750 (51%), Gaps = 26/750 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +   N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   
Sbjct: 1   MNMSNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RY
Sbjct: 61  YRKSAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT I
Sbjct: 121 TEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   
Sbjct: 181 PPHNLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      
Sbjct: 240 VRSRTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR+++
Sbjct: 300 IAIELKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           +  RS F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q 
Sbjct: 359 IIERSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+ 
Sbjct: 419 EAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHF 545
                  R +  +           ++I +E   V ++  G+++     S +   L  +  
Sbjct: 479 P------RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGK 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           ++ D L     A TT+ +LL +T G     P   L   R       L   +++       
Sbjct: 533 RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEI 592

Query: 606 FVYD-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKV 656
              D          + V+  G     +  E+        K   ++K+  + +++  +  V
Sbjct: 593 LYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPV 652

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +V +N   L FS  ++P    +  GV+  + K+                 +   
Sbjct: 653 IMEDLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDDSLASAFAVTSNSFFVL--T 710

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            R   +           R   G LV +   
Sbjct: 711 QRGSLKRMAVDDIPQTSRANRGLLVLRELK 740


>gi|327440232|dbj|BAK16597.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046]
          Length = 809

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 206/750 (27%), Positives = 370/750 (49%), Gaps = 25/750 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K
Sbjct: 5   EKFQDLPLEEVMGDRFGRYSKYIIQDRALPDTRDGLKPVQRRIMYAMFHEGNTFDKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD++VR++Q +  R+ L+   GN G++DGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKSRHMLVEMHGNNGSVDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ ++++ V+F   ++++D EP V PS+FPNLL NG +GI+ G AT IP H
Sbjct: 125 RLSAIAAELLRDINKNTVEFVPNFDDQDMEPTVLPSRFPNLLVNGATGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+QE  +A L  +DN   ++++L+  I GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 185 NLQEALDAVLMRLDNKSCTVDELMTVIKGPDFPTGG-IIQGVDGIKKAYETGKGKIIVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-IAKRIPLLEDIRDESAEDVRIVL 313
           R  +E++      I++TEIP++V K+ +I K+ EL    +R+  + +IRDES  +   ++
Sbjct: 244 RTEIEQLKGNKEQIIITEIPFEVNKANMIRKMDELRVNDRRLDGISEIRDESDRNGLRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +    ++  +   +D++  +     +    R P +M L  +L  ++ H++E++ 
Sbjct: 304 VELKKDVPAQGILNFLLKSTDLQVSYNF-NMIAIHNRRPMMMTLPLMLDAYIDHQKEIVR 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FSLTENQVDA 430
           RRS + +   + R+ I++GL+ A   +DE+I  IR     +    +    F  +E Q +A
Sbjct: 363 RRSQYDLTRAEDRLHIVEGLMKALSILDEVIETIRASKDKRDAKNNIIEKFGFSEEQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +  Q++ E D L     K+ ++L   K+    I  E+ ++K+ F+   
Sbjct: 423 IVSLQLYRLTNTDITQLQKEQDELHELVVKLKAILEDEKKLIRVIKSELNDIKKRFTLP- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R +  E    +    +  ++  E + V ++  G+++     S    +      K+
Sbjct: 482 -----RLSTIEAEIEEIKVTRDVLVPSEEVVVTVTKDGYVKRTSLRSHSASNGKDFAMKD 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            D L    + +T   +LL +  G     P   L   R       +   +  + +     V
Sbjct: 537 SDYLLYEANLNTQHHLLLFTNKGHYIYQPVHELPDIRWKDLGQHISSIVPIDSNEEIIEV 596

Query: 608 Y------DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-D 659
                       +   + +G       ++ I     K    + +  E++M     VT  +
Sbjct: 597 IGIETFEQPNMYVFTATKEGQIKRSALADYIVTRYSKPIKTMNLKGEDEMIFARLVTDKE 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGR 717
            V +       + F ++ +P    +  GV+    K+G  ++ V   K  +    +    R
Sbjct: 657 EVLLSTNTSYTIRFPMEDLPVTGVKTAGVKGIIVKEGEYLAAVALLKPDQEQELVIVTQR 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              +        LG R   G ++ K    +
Sbjct: 717 GAVKRMLLSELELGNRAKRGVVILKELKSN 746


>gi|189474076|gb|ACD99844.1| ParC [Shigella flexneri]
          Length = 657

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 253/668 (37%), Positives = 413/668 (61%), Gaps = 16/668 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSI 675
            ++L+F +
Sbjct: 650 GRMLMFPV 657


>gi|312829751|emb|CBX34593.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus ECT-R 2]
          Length = 800

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 215/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  F  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|222153160|ref|YP_002562337.1| DNA topoisomerase IV subunit A [Streptococcus uberis 0140J]
 gi|222113973|emb|CAR42255.1| topoisomerase IV subunit A [Streptococcus uberis 0140J]
          Length = 819

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 209/747 (27%), Positives = 378/747 (50%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEISGFLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   +EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDATVYMIDHPNAKLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   I+VTEIPY++ KS L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEELKGGKQQIIVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + ++  +   +D++  +  NM  +     P  + +  IL  ++AHR+ ++  
Sbjct: 301 ELKKDADTETVLNYLLKYTDLQVNYNFNMVAIDHF-TPHQVGIQKILSSYIAHRKSIIIE 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR  D     K  +   ++ TE Q +AI
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASDNKADAKENLKVSYAFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E D L    + + +++      +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDILTLQKEEDELNDLIKTLTAIIGDEATMYNVMKRELRDVKKKFGNE-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+I+     S +   L  +  ++ 
Sbjct: 478 ----RRSELQKEAQTIEIDTASLIVEEETFVSVTKSGYIKRTSPRSFNASSLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L    +A TT  +LL +  G     P   L   +           + +   ++ I+ A
Sbjct: 534 DHLIFVENAKTTQHLLLFTDQGNVIYRPIHELQDIKWKEIGEHLSQHITNFATDELILHA 593

Query: 606 FVYD--STCKLLVVSSKGNAFIVEESEIIA----NTRKGKTFLKVSSEEKMKLVVKVTGD 659
            + D         V+  G     +  ++       T+  K     + ++++  V  +  +
Sbjct: 594 EIVDYFEKGSYFSVTQLGQIKRFDRKDLTPWRTYRTKSTKYAKLKNEQDRIVSVAPIFFE 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + ++      L FS +++P    +  GV+  + K G           +    +    R 
Sbjct: 654 DILLISHQGYALRFSAEEVPVQGLKSAGVKAMNLKAGDHIAAAFLASTDSFFVL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 SLKRVATSDIPQTSRANRGLLVLRELK 738


>gi|117928629|ref|YP_873180.1| DNA topoisomerase IV subunit A [Acidothermus cellulolyticus 11B]
 gi|117649092|gb|ABK53194.1| DNA topoisomerase IV subunit A [Acidothermus cellulolyticus 11B]
          Length = 813

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 237/769 (30%), Positives = 377/769 (49%), Gaps = 35/769 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     +      +  V  V +   +   YL YA S I  RA+PD RDG KPVHRRI++ 
Sbjct: 4   MARRTQTPPTPPPDGRVIDVDVAAEMRGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQ 63

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMGL       K AR+VG+V+GKLHPHGD ++YD+LVR+AQPF    PL+ G GNFG+
Sbjct: 64  MREMGLRSDRPHVKCARVVGDVMGKLHPHGDMAIYDALVRMAQPFAMWLPLVDGHGNFGS 123

Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           + G D  AAYRYTE RMT  AE +   +DED VDF   Y+ +++EPVV P+ FPNLL NG
Sbjct: 124 LGGDDPPAAYRYTECRMTAAAEAMTADLDEDVVDFAPNYDGQETEPVVLPAAFPNLLVNG 183

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            SGIAVGMAT++P HN+ E+  AA  L++NP+ S+++L+ ++ GPD PTGG IV   + +
Sbjct: 184 ASGIAVGMATNMPPHNLGEVVAAARYLLENPQASLDELMRWVPGPDLPTGGEIV-GLDGV 242

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E+Y  GRG FR+RA   +EEV      IVVTE+PY V   R++ +I +L+ AK++  + 
Sbjct: 243 REAYATGRGSFRMRATARIEEVRGRRKGIVVTELPYGVGPERVVARIKDLVSAKKLAGIA 302

Query: 300 DIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           D+RD +       V+    +  DP  +++ ++ L+ +E  F +N   L     P+ + L 
Sbjct: 303 DVRDLTDRHHGLRVVIEVRQGFDPQAVLDQLYKLTPLEESFAVNNVALVD-GQPRTLGLA 361

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KP 415
            +L+ ++ HR EV  RRS+FR +  + ++ I++G L A ++ID +IAIIR  D     + 
Sbjct: 362 DLLQVYVGHRIEVTRRRSAFRKKRREAQLHIVEGRLRAIVDIDRVIAIIRASDDTAQARD 421

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++  F LTE Q + IL+L LR L K  + ++++E D L  +   +  +L S ++    +
Sbjct: 422 ALMETFGLTEVQANDILDLPLRRLTKFSKIELEAERDELRRDIASLGDILGSEQRLRAVV 481

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           + E+  V E F+        R T          T +   I   P  VV+S  G +     
Sbjct: 482 SAELAAVAEQFATP------RRTRLTADDGSPVTSRPLEIPDSPCCVVLSATGLLARTTG 535

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE------- 588
                        D++  A+   T   + L+++ G+   LP  +L S    G        
Sbjct: 536 PGFPSGDADRARHDAIADAVEVTTRGDVGLITSQGRVLRLPVLDLPSLDDTGPVSLAGGL 595

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            +  ++ L   +++V          +++ +  G    V     +   +   + + +   +
Sbjct: 596 PVSEVLGLEAGEELVGLTPVSEQLDVVLATRSGVVKRVSGR--MPERKPDASIIALRPGD 653

Query: 649 KMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISD------ 699
           ++     V    D + ++  + +LL F + ++        GV      DG          
Sbjct: 654 RVVGARSVRTGRDELVLITSDAQLLHFPVAELRPQGFAAAGVAGIHLSDGASVIFFSAVD 713

Query: 700 ----VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                +   I      +        +           RG  G    +  
Sbjct: 714 PARPAVVVTIAGASAALPGTQAGSAKVTRFSEFPGKGRGTRGVRCHRFL 762


>gi|167893371|ref|ZP_02480773.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 7894]
          Length = 738

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 273/724 (37%), Positives = 406/724 (56%), Gaps = 33/724 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  V+F   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L+  + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--------------- 304
           ++ RG W +VVTE+P      +++E+I EL   K     + +  E               
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAV 319

Query: 305 -----SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
                    VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 EADAKQYGDE-----RRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  +   +   LL+ SS G  F+ +  ++++  + GK+F+ +         + V   
Sbjct: 611 SHLLHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPD 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTG 729

Query: 717 RSYN 720
           R   
Sbjct: 730 RGGK 733


>gi|149913518|ref|ZP_01902051.1| DNA topoisomerase IV, A subunit [Roseobacter sp. AzwK-3b]
 gi|149812638|gb|EDM72467.1| DNA topoisomerase IV, A subunit [Roseobacter sp. AzwK-3b]
          Length = 814

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 324/824 (39%), Positives = 453/824 (54%), Gaps = 90/824 (10%)

Query: 6   ISNSNTLVEENVKAV-----SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +S+   L+++  +        LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++A
Sbjct: 1   MSD---LIDDGAEPATEFAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYA 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGN
Sbjct: 58  MRELRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGN 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+ AA RYTEARMT VAE +L G++E+AVD+RD Y+    EP+V P+ FPNLLANG+
Sbjct: 118 IDGDNPAASRYTEARMTAVAEALLDGLNENAVDYRDNYDGTLREPIVLPASFPNLLANGS 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +A L LI  P+   + LL YI GPDFPTGG+IVE RE+I 
Sbjct: 178 SGIAVGMATNIPPHNISELVDACLHLIKVPDARDDTLLNYIPGPDFPTGGVIVEPRENIA 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG FR+R +W VE++GRG W IVVTEIPYQVQKS+L+EK+AE+I  K++P+L D
Sbjct: 238 QAYRTGRGAFRLRCKWEVEDLGRGQWQIVVTEIPYQVQKSKLVEKLAEVIQTKKVPILAD 297

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESA+DVR+VL P+++++DP++LM  ++  SD+E RF LNMNVL  G  P+V  L  +
Sbjct: 298 IRDESADDVRMVLEPRSKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSLKEV 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+ +L  RREVL RRS  RM  ID R+E+L+GL+ A+LN+D +I IIR +D PK  ++  
Sbjct: 358 LRAFLDFRREVLERRSRHRMAKIDNRLEVLQGLITAFLNLDRVIEIIRYDDDPKVALMYE 417

Query: 421 FSLTENQVDAILNLR------------LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS- 467
              T +Q      +             +  L  + + + ++      +       + +S 
Sbjct: 418 DWSTPHQASLSRAMTEADYRSPLEGVDIAQLVLIADPEAEAMGVLAESTAATPREVPHSY 477

Query: 468 -------GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
                     Q   I            +   +  R T   E +  +     + +      
Sbjct: 478 AGRENGLSDVQAEAILNMRLRSLRRLEEDALVRERDTLMEERAGLEDLLEDETLQWDAIS 537

Query: 521 TVVISNRGWIRSL---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             +   +            +V +    F E   ++        DR  +     K   + A
Sbjct: 538 EQLRQVKKTFGRDYVLDGKNVGVRRTQFAEAGEVEEVPLEAMIDREPITVVCSKMGWIRA 597

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI------ 631
            +              +      +    F  ++T +LLV  + G  + +  + +      
Sbjct: 598 MSGHIDLSRE------LKFKDGDEGRFVFHAETTDRLLVFGTNGRFYTLSAANLPGGRGM 651

Query: 632 ------------------IANTRKGKTFLK--------VSSEEKMKL------------- 652
                             +   R G   L         V  E+++               
Sbjct: 652 GEPLRLMVDLPNEAEIVDLFIHRPGAKLLVASSAGDGFVVPEDEVVAQTRSGKQVLNVRD 711

Query: 653 ------VVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC 706
                   KV GDHVA VGENRK+LIF++D++PEM RGKGVRLQ YKDGG+SD   F + 
Sbjct: 712 DVRAKVCTKVEGDHVACVGENRKVLIFALDELPEMGRGKGVRLQKYKDGGLSDATTFALA 771

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +GL+W D AGR   RSE DL  W GKR   G + P+GFPR  +F
Sbjct: 772 DGLSWHDPAGR--TRSETDLAEWTGKRASAGRMAPRGFPRDNRF 813


>gi|87160035|ref|YP_493948.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|294848359|ref|ZP_06789106.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
 gi|87126009|gb|ABD20523.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|294825159|gb|EFG41581.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
          Length = 800

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 214/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|293556776|ref|ZP_06675339.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039]
 gi|293563434|ref|ZP_06677883.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162]
 gi|293568153|ref|ZP_06679489.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071]
 gi|291589143|gb|EFF20955.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071]
 gi|291601108|gb|EFF31397.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039]
 gi|291604695|gb|EFF34180.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162]
          Length = 816

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 395/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR     K    +    F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|258545626|ref|ZP_05705860.1| topoisomerase IV subunit A [Cardiobacterium hominis ATCC 15826]
 gi|258519093|gb|EEV87952.1| topoisomerase IV subunit A [Cardiobacterium hominis ATCC 15826]
          Length = 749

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 272/744 (36%), Positives = 437/744 (58%), Gaps = 22/744 (2%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +   L   +E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   +  KKSAR
Sbjct: 7   EQQPLAGFVEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSHQSKHKKSAR 66

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARM 136
            VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   S AA RYTE+R+
Sbjct: 67  TVGDVIGKYHPHGDSACYEAMVLMAQDFAYRYPLVDGQGNWGSADDPKSFAAMRYTESRL 126

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A+ +L  +++  V++   ++    EP   P++ PN+L NG SGIAVGMAT++  HN+
Sbjct: 127 TGYAKTLLAELEQGTVEWVANFDGTLQEPARLPARLPNILLNGGSGIAVGMATNLLPHNL 186

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A  ALI +P ++ + L++YI  PDFPTGG +V +RE I   YR GRG  R+RA W
Sbjct: 187 GEVVAACRALIADPLLTDDALMQYIPAPDFPTGGELVSAREEIAALYRTGRGAVRLRATW 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLF 314
            +E+       I++ ++PYQV  S++ E+IA+ + AK++  LED+RDES  +  +R+VL 
Sbjct: 247 HLEDGN-----IIIDQLPYQVSGSKVQEQIAKQMQAKKLAWLEDLRDESDHEHPIRLVLV 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++  +D + LM+ +F  +D+E R+   MN++ +   PQV  L  IL+EWL +R E + R
Sbjct: 302 PRSNRVDHERLMQHLFATTDLEKRYSAQMNMIGLDGRPQVKNLGQILREWLVYREETVRR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R + R+ A++ R+ IL+GLLIAYLN+DEII IIR ED+P+PV+++ F+L+E Q +AILN 
Sbjct: 362 RLNHRLHAVNERLHILQGLLIAYLNLDEIIRIIRTEDEPRPVLMATFALSEAQAEAILNT 421

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR L +LEE QI++E + L AE++ +  LL S ++    IA E+      +  +     
Sbjct: 422 RLRHLARLEEIQIRAEQEALAAEQQHLHELLQSRERLLTLIADELAADAATYGDA----- 476

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT   E   A      +     E +T+++S  GWIR  K H++D +AL +K GD+    
Sbjct: 477 RRTVIIEREAAVALDETEL-TPSEAVTLILSKMGWIRGGKGHAIDGAALTYKNGDAYLTQ 535

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +   +  +  LL+ +G++YTL    L S R +GE +   + ++ +  I+ A + +   + 
Sbjct: 536 ISGRSNQQACLLADNGRSYTLALHGLPSARSYGEPLSSSMSIDASAHIIAAAIIEPERRY 595

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKLLI 672
           L+ +  G  F++  +E+ + T+ GKT +      +      +      +  +    ++ +
Sbjct: 596 LIAADNGYGFLIPGAELTSKTKSGKTLITPGGASRAITLQALPDGETDILAISNEGRVAL 655

Query: 673 FSIDQIPEMSRGKG-----VRLQSYKDGGISDVICFKICEGLTW-IDSAGRSYNRSENDL 726
              ++IPE+++GKG     +  ++Y   GI       +  G    + S  +      N+ 
Sbjct: 656 IPAEEIPELAKGKGSQTLAIAKKTYDADGIRLAHILAVPRGRDITLHSGKQKLTIRANER 715

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKF 750
             +L  RG  G+ +PK + R    
Sbjct: 716 EHYLTPRGHKGNWLPKNYRRIDHI 739


>gi|293570286|ref|ZP_06681355.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980]
 gi|291609693|gb|EFF38954.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980]
          Length = 816

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 212/754 (28%), Positives = 395/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR     K    +    F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + +G T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIVNGLLVLADGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|302554636|ref|ZP_07306978.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736]
 gi|302472254|gb|EFL35347.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736]
          Length = 818

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 230/766 (30%), Positives = 378/766 (49%), Gaps = 39/766 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ MSEMGL  
Sbjct: 11  PDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMSEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++   D  A
Sbjct: 71  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM +   L+   +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMAEATSLMTDSIDEDTVDFNPNYDGQEQEPVALPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN++E+  AA  LI +P   ++ L++++ GPD PTGG IV     I ++Y  GR
Sbjct: 191 ATNMPPHNLREVIAAARHLIRHPNADLDALMKHVPGPDLPTGGRIV-GLSGIRDAYETGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VE V      +VVTE+P+ V   ++I KI +L+ +K+I  + D++D +  
Sbjct: 250 GTFKMRATVSVEPVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKIQGIADVKDLTDR 309

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +L 
Sbjct: 310 AHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVD-GQPLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           HR  V+ RRS FR      R+ +++GLL A L+IDE+I +IR+ +     K  ++ +FSL
Sbjct: 369 HRFTVVRRRSEFRRGKKRDRLHLVEGLLTALLDIDEVIRLIRSSENSAQAKQRLMEQFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q   IL+  LR L K +  ++++E D L AE E++  +L S  +    ++ E+  V 
Sbjct: 429 SDVQTQYILDTPLRRLTKYDRIELETEKDRLNAEIEELTRILESDAELRKLVSSELATVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--DLS 541
           + F        RRT   E   A  AT     +  +P  V++S+ G +    +     + +
Sbjct: 489 KKFGT-----DRRTDLLESGGAPVAT-VPLQVADDPCRVLLSSTGLLARTANGEPFAENA 542

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--------AIQLL 593
                + D +  A+ A     I  +++ G+   L   +L                 +   
Sbjct: 543 GAKRVKHDVIVSAVPATARGEIGAVTSAGRLLRLNVIDLPQLPESMPTPNLAGGAPLAEF 602

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + L  ++ +V     D +   L + + +G    V   +  ++ ++    + +   +++  
Sbjct: 603 LSLEDDETVVCLTTLDESSPGLAIGTEQGVVKRV-VPDYPSH-KEELEVITLKEGDRIVG 660

Query: 653 VV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEG 708
            V  +   + +  + ++ +LL +    +    R   GV      +G  +           
Sbjct: 661 AVELRTGDEDLVFITDDAQLLRYQASVVRPQGRPAGGVAGIKLAEGVKVISFTAVDPAAD 720

Query: 709 LTWIDSAG---------RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 AG         ++  +           R   G    +   
Sbjct: 721 AVVFTVAGSRGTLDDSVQTTAKLTPFDQYPRKGRATGGVRCQRFLK 766


>gi|199599526|ref|ZP_03212914.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus HN001]
 gi|258508415|ref|YP_003171166.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus GG]
 gi|199589567|gb|EDY97685.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus HN001]
 gi|257148342|emb|CAR87315.1| DNA topoisomerase IV, A subunit [Lactobacillus rhamnosus GG]
 gi|259649729|dbj|BAI41891.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus GG]
          Length = 813

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 211/760 (27%), Positives = 371/760 (48%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F
Sbjct: 1   MANQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYT
Sbjct: 61  RKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP
Sbjct: 121 EARLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  A L L+ +P+  +  L++Y+ GPDFPTGG I++  + I ++Y  GRG   V
Sbjct: 181 PHNLREVFNAILYLLKHPQADLADLMQYVKGPDFPTGG-IIQGLDGIKQAYETGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R  +E +  G   IVVTEIPY V K+++I+KI EL + K++  + ++RDES      V
Sbjct: 240 RSRTHIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRLNKKVDGIAEVRDESDRFGLSV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  ++    P+++ L  +L+ ++AHRR+V+
Sbjct: 300 VIELKKEADAHGILNYLFKNTDLQITYNFNMVAIADM-QPKLLGLKAMLEAYVAHRRDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ + +     R  I++GL+     +D++IA IR          +   +F  +E Q +
Sbjct: 359 TRRTRYELNKAQARQHIVEGLIKMLSILDQVIAAIRASSDKGDAKRNLVKQFDFSEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +   
Sbjct: 419 AIVSLQLYRLTNTDITALQDEAAQLAKAIAEYQDILAQPASRDRVIEKELKRIAKEYGD- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                RR++  +             +  E + V +S  G+++     S    D      K
Sbjct: 478 ----DRRSSI-QAEIETLEVATTVTVADETVMVQVSRDGYVKRSSLRSYQAVDPEDNGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
             D         T   + +++  G     P         +  GE +   + L  ++ ++ 
Sbjct: 533 PNDLAIFTGELSTLQHLYIVTNAGNIIYRPVYEISDARWKDTGEHLSQTVGLGTDEKVLA 592

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVS-SEEKMKLVVKVT 657
            F +D        ++ SS G       S++       RK    +K+      +      T
Sbjct: 593 VFAFDQLDLAGTFVLGSSDGYIKQTALSDLQPQRTYKRKPMMAMKLKTPGAVVTNAYFTT 652

Query: 658 G--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWID 713
                V VV  +   L F +D++  +  R  GV+    K +  + + I  K  E      
Sbjct: 653 DQAQDVFVVSRHAYGLDFPLDEVSTVGARATGVKSMDLKPEDEVVNFILVKQPEKAVVGI 712

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
              R   +           R   G LV +   R   + ++
Sbjct: 713 LTQRGAFKRMALSEVGQMSRARRGLLVLRELKRDPHRIVA 752


>gi|294631866|ref|ZP_06710426.1| DNA gyrase, A subunit [Streptomyces sp. e14]
 gi|292835199|gb|EFF93548.1| DNA gyrase, A subunit [Streptomyces sp. e14]
          Length = 818

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 228/766 (29%), Positives = 377/766 (49%), Gaps = 39/766 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL  
Sbjct: 11  PDEPYEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVRLAQ F  R PL+ G GNFG++   D  A
Sbjct: 71  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRLAQSFSMRVPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM +   L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMAEATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN+ E+  AA  LI  P   ++ L++++ GPD PTGG IV     I ++Y  GR
Sbjct: 191 ATNMPPHNLGEVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLSGIRDAYESGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VE V      +VVTE+P+ V   ++I KI +L+ +K+I  + D++D +  
Sbjct: 250 GTFKIRATVTVETVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKIQGIADVKDLTDR 309

Query: 308 D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +L 
Sbjct: 310 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           HR EV+ RRS +R      R+ +++GLL A ++IDE+I +IR+ +     K  ++ RFSL
Sbjct: 369 HRFEVVRRRSEYRRGRRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q   IL+  LR L K +  ++++E + L AE E++  +L+S  +    ++ E+  V 
Sbjct: 429 SEVQTQYILDTPLRRLTKYDRIELEAEKEKLTAEIEELTRILDSDAELRKLVSTELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F        RRT   E + A         +  +P  V++S+ G +    +        
Sbjct: 489 KKFGTP-----RRTLLLE-AGAVPVAAVPLQVADDPCRVLLSSTGLLARTPNDEPLPQDA 542

Query: 544 --HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--------AIQLL 593
                + D +  ++ A     + ++++ G+   +   +L                 I   
Sbjct: 543 DGKRVKHDVIVSSVPATARGEVGVVTSAGRLLRVNVVDLPQLPETATAPNLSGGAPITEF 602

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + L  ++ ++     D +   L + + +G    V   +  AN +     + +   +++  
Sbjct: 603 VSLGDDETVICLTTLDESSPGLALGTEQGVVKRV-VPDYPAN-KDELEVITLREGDRIVG 660

Query: 653 VV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEG 708
            V  +   + +  + ++ +LL +   Q+    R   GV      DG  +           
Sbjct: 661 AVELRTGEEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGIKLADGAKVISFTAVDPAAD 720

Query: 709 LTWIDSAG---------RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 AG         ++  +           R   G    +   
Sbjct: 721 AVVFTVAGSRGTLDDSVQTTAKVTPFDQYPRKGRATGGVRCQRFLK 766


>gi|328885558|emb|CCA58797.1| Topoisomerase IV subunit A [Streptomyces venezuelae ATCC 10712]
          Length = 819

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 227/766 (29%), Positives = 373/766 (48%), Gaps = 39/766 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPV RRI++ M EMGL  
Sbjct: 11  PDDAFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMGEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
              F K AR+VGEV+GKLHPHGD S+YD++VR+AQPF  R PL+ G GNFG++   D  A
Sbjct: 71  DRGFVKCARVVGEVMGKLHPHGDASIYDAMVRMAQPFSMRLPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+RM   A L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG SGIAVGM
Sbjct: 131 AMRYTESRMAPAALLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     I ++Y  GR
Sbjct: 191 ATNMPPHNLGEVIAAARHLIRHPHADLETLMRFVPGPDLPTGGRIV-GLSGIKDAYESGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VE V      IVVTE+P+ V   ++I KI +L+ +K++  + D++D +  
Sbjct: 250 GSFKIRATTSVETVTARRKGIVVTELPFTVGPEKVISKIKDLVGSKKLQGIADVKDLTDR 309

Query: 308 D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +L 
Sbjct: 310 NHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           HR EV+ RRS FR      R+ +++GLL+A L+IDE+I +IR  +     K  ++ RFSL
Sbjct: 369 HRFEVVRRRSEFRRTKKRDRLHLVEGLLVALLDIDEVIRLIRESENSAQAKERLMERFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q   IL+  LR L K +  ++++E + L  E +++  +L S  +    ++ E+  V 
Sbjct: 429 SEIQTQYILDTPLRRLTKFDRIELETEQNRLNGEIDELTGILESDAELRKLVSAELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F+       RRT   E + A  A      +  +P  V++S+ G +    +  +     
Sbjct: 489 KKFAT-----DRRTVLLESAGAPVAA-VSLEVADDPCRVLLSSTGLLARTATAELPPVDP 542

Query: 544 --HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--------AIQLL 593
                + D +  ++ A     I  +++ G+   +   +L                 +   
Sbjct: 543 DAARAKHDVILSSVAATQRGDIGAVTSGGRLLRIAVIDLPQLPDTASAPNLAGGAPLSEF 602

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + L  ++ +V     D     L + + +G    V   +  AN +     + +   +++  
Sbjct: 603 LSLEADETVVCLTTLDEASPGLALGTLQGVVKRV-VPDYPAN-KDELEVITLKDGDRIVG 660

Query: 653 V--VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEG 708
              ++   + +  +  + +LL +   Q+    R   G+       G  +           
Sbjct: 661 ATELRTGDEDLVFITSDAQLLRYPAAQVRPQGRPAGGMAGVKLSAGADVISFTAVDPAAD 720

Query: 709 LTWIDSAGRSYN---------RSENDLLGWLGKRGGVGSLVPKGFP 745
                 AG +           +           R   G    +   
Sbjct: 721 AVVFTVAGSTGTLDGSAATSAKLTPFDQYPRKGRATGGVRCQRFLK 766


>gi|207113492|gb|ACI23464.1| topoisomerase IV [Edwardsiella tarda]
          Length = 701

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 266/711 (37%), Positives = 420/711 (59%), Gaps = 22/711 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRI++AMSE+GL   A FKKSAR VG+V+GK HPHG  + 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKYHPHGVSAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ AE++L  + +  VD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSRYAEILLSELGQGTVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +   ++    EP   P++ PN+L NGT+GIAVGMAT IP HN +E+  A +AL+DNP+ S
Sbjct: 121 YVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMATDIPPHNAREVAAALVALLDNPQSS 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           ++ LL +I GPDFPT   I+  R+ I + YR GRG  R+RA W  EE       IV++ +
Sbjct: 181 LDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRGSVRMRAVWRKEESE-----IVISAL 235

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFM 331
           P+Q   ++++E+IA  + A+   +++D+RDES  +   R+V+ P++  +D D LM  +F 
Sbjct: 236 PHQTSGAKVLEQIASQMRARSCSMVDDLRDESDHENPTRLVIVPRSNRVDLDQLMNHLFA 295

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +D+E  + +NMN++ + R P V  L  IL EWL++RRE + RR ++R++ + +R+ IL+
Sbjct: 296 TTDLEKSYRINMNMIGLDRRPAVKDLREILSEWLSYRRETVRRRLNYRLEKVLKRLHILE 355

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           GLL A+LNIDE+I IIR+ED+PKPV+V+RF L++ Q +AIL L+LR L +LEE +I+ E 
Sbjct: 356 GLLCAFLNIDEVIHIIRSEDEPKPVLVARFGLSDTQAEAILELKLRHLARLEEVKIRGEQ 415

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  E++++ +LL S ++    I  EI    E +  +     RR+   E S A +A  +
Sbjct: 416 DALAQERDRLQTLLASERKLGTLIKEEIMADAETYGDA-----RRSPLQERSEA-RAMSE 469

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
              +  EP+T+V+S  GW+RS K H +D S L++K GD+ + A    +   ++ + + G+
Sbjct: 470 HDFVPSEPVTIVLSEGGWVRSAKGHDIDPSGLNYKAGDAFRAAARGKSNQPVVFIDSSGR 529

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +Y L    L S RG GE +   +       I    +     KLL+ S  G  F+   S++
Sbjct: 530 SYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMAADNQKLLMASDAGYGFVCTFSDL 589

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSRGKGVRL 689
           +A  R GK  L +    K+   +++ GD   +  + E  ++L+F +  +P++S+GKG ++
Sbjct: 590 VACNRAGKAMLTLPENAKVLTPLEINGDDDMLLAITEAGRMLMFPVHDLPQLSKGKGNKI 649

Query: 690 QSYKD------GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
            S               +     +    +    R              +RG
Sbjct: 650 VSIPAAQAAAGEDTLKWLLVLAPQTSLTLHVGKRKLVMKPAGFAEVPRERG 700


>gi|21224180|ref|NP_629959.1| DNA topoisomerase IV subunit A [Streptomyces coelicolor A3(2)]
 gi|2661689|emb|CAA15793.1| DNA gyrase-like protein [Streptomyces coelicolor A3(2)]
          Length = 818

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 233/766 (30%), Positives = 380/766 (49%), Gaps = 39/766 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL  
Sbjct: 11  PDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++   D  A
Sbjct: 71  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM + A L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN++E+  AA  LI  P   ++ L++++ GPD PTGG IV     I ++Y  GR
Sbjct: 191 ATNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLPGIRDAYETGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VE V      +VVTE+P+ V   ++I KI +L+ AK+I  + D++D +  
Sbjct: 250 GTFKIRATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDR 309

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +L 
Sbjct: 310 AHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVD-GQPLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           HR  V+ RRS FR      R+ +++GLL A ++IDE+I +IR+ +     K  ++ RFSL
Sbjct: 369 HRFTVVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q   IL+  LR L K +  +++SE D L AE E++  +L+S  +    ++ E+  V 
Sbjct: 429 SDVQTQYILDTPLRRLTKYDRIELESEKDRLNAEIEELTRILDSDAELRKLVSAELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA- 542
           + F        RRTT  E S A  A      +  +P  V++S+ G +    +    ++  
Sbjct: 489 KKFGT-----DRRTTLLESSGAPVAA-VPLQVADDPCRVLLSSTGLLARTANDEPLVTEA 542

Query: 543 -LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--------AIQLL 593
                + D +  A+ A     + ++++ G+   +   +L                 +   
Sbjct: 543 GAKRVKHDLIVSAVPATARGEVGVVTSGGRLLRVNVVDLPQLPEAMPTPNLAGGAPLAEF 602

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + L  ++D+V     D +   L + + +G    V       + +     + +   +++  
Sbjct: 603 VSLEDDEDVVCLTTLDESSPGLALGTEQGVVKRVVPD--YPSNKDELEVITLKDGDRIVG 660

Query: 653 VV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEG 708
            V  +   + +  + ++ +LL +   Q+    R   GV      DG  +           
Sbjct: 661 GVELRTGDEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGVKLADGAKVISFTAVDPAAD 720

Query: 709 LTWIDSAG---------RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 AG         ++  +           R   G    +   
Sbjct: 721 AVVFTVAGSRGTLDDSVQTTAKLTPFDQYPRKGRATGGVRCQRFLK 766


>gi|256784738|ref|ZP_05523169.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
 gi|289768625|ref|ZP_06528003.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
 gi|289698824|gb|EFD66253.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
          Length = 818

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 233/766 (30%), Positives = 380/766 (49%), Gaps = 39/766 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL  
Sbjct: 11  PDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++   D  A
Sbjct: 71  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM + A L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN++E+  AA  LI  P   ++ L++++ GPD PTGG IV     I ++Y  GR
Sbjct: 191 ATNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLPGIRDAYETGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VE V      +VVTE+P+ V   ++I KI +L+ AK+I  + D++D +  
Sbjct: 250 GTFKIRATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDR 309

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +L 
Sbjct: 310 AHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVD-GQPLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           HR  V+ RRS FR      R+ +++GLL A ++IDE+I +IR+ +     K  ++ RFSL
Sbjct: 369 HRFTVVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q   IL+  LR L K +  +++SE D L AE E++  +L+S  +    ++ E+  V 
Sbjct: 429 SDVQTQYILDTPLRRLTKYDRIELESEKDRLNAEIEELSRILDSDAELRKLVSAELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA- 542
           + F        RRTT  E S A  A      +  +P  V++S+ G +    +    ++  
Sbjct: 489 KKFGT-----DRRTTLLESSGAPVAA-VPLQVADDPCRVLLSSTGLLARTANDEPLVTEA 542

Query: 543 -LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--------AIQLL 593
                + D +  A+ A     + ++++ G+   +   +L                 +   
Sbjct: 543 GAKRVKHDLIVSAVPATARGEVGVVTSGGRLLRVNVVDLPQLPEAMPTPNLAGGAPLAEF 602

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + L  ++D+V     D +   L + + +G    V       + +     + +   +++  
Sbjct: 603 VSLEDDEDVVCLTTLDESSPGLALGTEQGVVKRVVPD--YPSNKDELEVITLKDGDRIVG 660

Query: 653 VV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEG 708
            V  +   + +  + ++ +LL +   Q+    R   GV      DG  +           
Sbjct: 661 GVELRTGDEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGVKLADGAKVISFTAVDPAAD 720

Query: 709 LTWIDSAG---------RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 AG         ++  +           R   G    +   
Sbjct: 721 AVVFTVAGSRGTLDDSVQTTAKLTPFDQYPRKGRATGGVRCQRFLK 766


>gi|294614809|ref|ZP_06694704.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1636]
 gi|291592271|gb|EFF23885.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1636]
          Length = 816

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 212/754 (28%), Positives = 394/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+I  IR     K    +    F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|309812888|ref|ZP_07706620.1| DNA gyrase/topoisomerase IV, A subunit [Dermacoccus sp. Ellin185]
 gi|308433166|gb|EFP57066.1| DNA gyrase/topoisomerase IV, A subunit [Dermacoccus sp. Ellin185]
          Length = 866

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 222/768 (28%), Positives = 372/768 (48%), Gaps = 42/768 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + + + +  EN+  + +   +   +L Y+ S I  RA+PD RDG KPV RRI+ +M E+G
Sbjct: 9   MPDEDIV--ENIIDIDVEDEMRAAFLEYSYSVIYSRALPDARDGLKPVQRRILFSMDELG 66

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS+R+VGEV+GK HPHGD ++YD+LVR+AQ F  R PLI G GNFG++D   
Sbjct: 67  LTPNKNHVKSSRVVGEVMGKYHPHGDSAIYDTLVRMAQDFTMRLPLIDGHGNFGSLD-QG 125

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+   +  ++ G+DE+ VDF   Y++   +P V P+ FPNLL NG SGIAV
Sbjct: 126 PAASRYTEARLAPASLTLVAGLDENTVDFVPNYDDSLQQPSVLPAAFPNLLVNGASGIAV 185

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ E+ +AA+ LI NP+ S++ L+ ++ GPD P GG I+   + I ++Y  
Sbjct: 186 GMATNMAPHNLGEVVQAAVHLIKNPDCSLDDLMRFVPGPDLPMGGRII-GLDGIRDAYLT 244

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FR RA   +E V      IVVTE+PY V   ++I+K+ +L+  K++  + D++D S
Sbjct: 245 GRGTFRTRATATIENVTPRRKGIVVTELPYLVGPEKVIDKMKDLVGQKKLHGVSDVKDLS 304

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++       +P+ ++E ++ L+ ME  F +N   L     P+ + L  +L+ +
Sbjct: 305 DRHHGLRLVIELKNGFNPEAVLEQLYKLTPMEESFGINNVALVD-GQPRTLGLKELLRVY 363

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
              R +V+ RR++ R+   + R+ ++ GLLIA L+IDE+I IIR+ D     +  ++  F
Sbjct: 364 TDFRIDVVRRRTTHRLGKKEDRLHLVDGLLIAILDIDEVIQIIRSSDDSATARARLMQVF 423

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q   IL+L+LR L K    +++ E D L AE EK+ ++L   K     +  E+  
Sbjct: 424 DLSEAQATYILDLQLRRLTKFSRLELEKEADELRAEIEKLRAILADVKLLHKVVCDELLA 483

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRAD------KATLQQAMIEKEPITVVISNRGWIRSLKS 535
           V + F        RRT   E +           +     I  +P  V++S+ G I    S
Sbjct: 484 VAKEFGTP-----RRTVLLEGNGTQAVAKTASKSSMPLEIPDDPCWVLLSSTGLIARTTS 538

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG-------- 587
             +  +    ++ D +  A          ++++ G+ + + A  L               
Sbjct: 539 ADLLSTDGGRRKHDVVLAAARTSARGEFGVVTSAGRLFRVSALELPHLVDTHAAPVLDGG 598

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
             +   +DL   + ++T     +    L + ++ G    V         +     + +  
Sbjct: 599 APVAAFVDLAPGEKVLTVTSLRADSPGLALGTAAGVVKRVTTEY---ANKPIMEVITLKG 655

Query: 647 EEKMKLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           ++ +   V  +   + +  V    +LL F+   +    R G GV       G  +     
Sbjct: 656 DDVVVGAVELQTGTEELTFVTNEAQLLHFNAANVRPQGRTGGGVAGIKLGAGARAIFFGS 715

Query: 704 KICEGLTWIDS-------AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
              +G+    +          +  +           R   G    +  
Sbjct: 716 VSRDGIVVTGAGHPGSPNGEITSLKVAPFTEFPAKGRATAGVRAHRFL 763


>gi|27467955|ref|NP_764592.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis ATCC
           12228]
 gi|38604845|sp|Q8CSN8|PARC_STAES RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|27315500|gb|AAO04634.1|AE016747_131 topoisomerase IV subunit A [Staphylococcus epidermidis ATCC 12228]
          Length = 800

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 221/748 (29%), Positives = 403/748 (53%), Gaps = 23/748 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  L  ID P+I+I +L++YI GPDFPTGGII    E I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQG-IEGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   E +  G   ++VTEIPY+V KS L++KI EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   ++  SD++  +     V      P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDANSESIKNYLYKNSDLQISYNF-NMVAISEGRPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ +  TE Q +
Sbjct: 359 TNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ M+  E + + ++  G+I+   + S     ++ +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P      +  +  G+ I  ++ ++ ++++V 
Sbjct: 533 DGDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    + +    ++ +  G       S+       K    +KV  ++++  VV++  D 
Sbjct: 593 VYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S +++ +   R  GV+  + KD     V+   + +  + I    R 
Sbjct: 653 LITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYV-VMTEDVNDSDSIIMVTQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  +  +    KR   G  + K   +
Sbjct: 712 AMKRIDFNVLQEAKRAQRGITLLKELKK 739


>gi|561880|gb|AAA53116.1| gyrase-like protein alpha subunit [Staphylococcus aureus]
          Length = 800

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/756 (28%), Positives = 395/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V K  L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKGSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R     + +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLRDIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VYNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKVEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|298370321|ref|ZP_06981637.1| DNA topoisomerase IV, A subunit [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281781|gb|EFI23270.1| DNA topoisomerase IV, A subunit [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 769

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 271/766 (35%), Positives = 411/766 (53%), Gaps = 43/766 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++   TL       + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNEQATLSPVGEDYLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRMIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQ 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL
Sbjct: 421 VIRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   I  E++   + F  +     RRT   E  RA            EPIT+++S
Sbjct: 481 GDENEKRKLIIKEMQADMKQFGDA-----RRTLVEEAGRAVL----TQTTADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  +  LI+L +    V           L+  S G  FI +  +++   + GK  + V 
Sbjct: 592 DGVPVSSLIELQNGAKPVAMLTGQPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVD 651

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   + V           + +   + +LL FSI ++  M +G+G++L S  DG   
Sbjct: 652 SGETVLPPIAVYASSLINPDCKIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTDGASL 711

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLV 740
           +          T      R           D+    GKRG  G ++
Sbjct: 712 EHTAVISSAEFTVETVGRRGAVHQERLRIRDID---GKRGKKGKVL 754


>gi|302557971|ref|ZP_07310313.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
 gi|302475589|gb|EFL38682.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
          Length = 818

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 227/764 (29%), Positives = 382/764 (50%), Gaps = 37/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL  
Sbjct: 11  PDDSYEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++   D  A
Sbjct: 71  DRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+RMT+   L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTESRMTEATSLMTESIDEDTVDFAPNYDGQEREPVTLPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN++E+  AA  LI  P   ++ L++++ GPD PTGG IV     I ++Y  GR
Sbjct: 191 ATNMPPHNLREVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLPGIRDAYETGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VE+V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +  
Sbjct: 250 GSFKIRATVTVEDVTARRKGLVVTELPFTVGPEKVIGKIKDLVGSKKLQGIADVKDLTDR 309

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +L 
Sbjct: 310 AHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           HR  V+ RRS FR      R+ +++GLL A ++IDE+I +IR+ +     K  ++ RFSL
Sbjct: 369 HRFNVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q   IL+  LR L K +  ++++E D L  E E++  +L+S  +    ++ E+  V 
Sbjct: 429 SDIQTQYILDTPLRRLTKFDRIELEAEKDRLNEEIEELTRILDSDAELRKLVSAELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F        RRT   E S    A +    +  +P  V++S  G +    + +      
Sbjct: 489 KKFGN-----DRRTLLLE-SAGTPAAVVPLQVADDPCRVLLSATGLLARTVNDAPLADDG 542

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--------AIQLLID 595
              + D +  +  A     I ++++ G+   L   +L                 +   + 
Sbjct: 543 KRVKHDVIVSSAPATARGEIGVVTSAGRLLRLNVVDLPQLPEQMPTPNLSGGAPVAEFVS 602

Query: 596 LNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           L  ++ +V     D +   L + + +G    V       + ++    + +   +++   V
Sbjct: 603 LEDDEQVVCLTTLDESSPGLALGTEQGVVKRVVPD--YPSNKEELEVITLKEGDRIVGAV 660

Query: 655 --KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI----------SDVI 701
             +   + +  + ++ +LL +   Q+    R   G+      +G             D +
Sbjct: 661 ELRTGDEDLVFITDDAQLLRYPAAQVRPQGRPAGGMAGVKVTEGAKVICFTAVDPAVDAM 720

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            F +      +D + ++  +           R   G    +   
Sbjct: 721 VFTVAGSRGTLDDSVQTTAKLTPFDQYPRKGRATGGVRCQRFLK 764


>gi|314936491|ref|ZP_07843838.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655110|gb|EFS18855.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis subsp.
           hominis C80]
          Length = 799

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 221/756 (29%), Positives = 409/756 (54%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +++ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELVRDINKETVSFVPNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  ID+P IS+ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLDEVIQATLKYIDHPNISVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYETGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   ++VTEIPY+V K+ L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEEALRNGRKQLIVTEIPYEVNKNSLVKRIDELRADKKVDGIIEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M L  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQITYNFNMVAISD-GRPKLMGLREIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+++ +   ++R+ I++GL+ A   +DE+IA+IR+       K  +V  F  TE Q +
Sbjct: 359 ANRTTYDLNHAEKRMHIVEGLMKALSILDEVIALIRHSKNKKDAKDNLVKEFDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E + L    E+  ++L++     N I  E+ E+++ F  S
Sbjct: 419 AIVMLQLYRLTNTDIVALEEEHEELQTLIEEYRNILDNHDALLNVIKKELTEIRKRFKTS 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ ++  E + + ++  G+I+   + S     ++ +  K
Sbjct: 479 ------RLSSIEAEISEIKIDKEVIVPSEEVVLSMTRHGYIKRTSTRSFNASGVTEVGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           EGDSL      +T D  L+ +  G+   +P      +  +  G+ +  ++ L  N+ I+ 
Sbjct: 533 EGDSLLKYQTVNTQDTALVFTNKGRYLFIPIHKIADVRWKELGQHVSQIVSLEENERIID 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +D     ++ +  G      +S        K     K+ +E+++  V+++T + 
Sbjct: 593 VFNEKTFDGKAFYIIATRNGMIKKSNQSLFKTTRFNKPLIATKLKNEDEVVNVLRITQEQ 652

Query: 661 -VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + V+      L +S +++ +   R  GV+  + KD     ++   + +  + I +  R 
Sbjct: 653 MIIVITHKGMSLTYSTEELSDTGLRAAGVKSINLKDEDYV-IMTDTVDKNNSIIMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +     +    KR   G  + K   ++  + +++
Sbjct: 712 AIKRIAKDILQDAKRAQRGITLLKELKKNPHRIVAA 747


>gi|257898811|ref|ZP_05678464.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com15]
 gi|257836723|gb|EEV61797.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com15]
          Length = 817

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 212/754 (28%), Positives = 395/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR     K    +    F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 598 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 657

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + +G T  + 
Sbjct: 658 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIVNGLLVLADGDTPIVI 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 718 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 751


>gi|319639079|ref|ZP_07993836.1| DNA topoisomerase 4 subunit A [Neisseria mucosa C102]
 gi|317399657|gb|EFV80321.1| DNA topoisomerase 4 subunit A [Neisseria mucosa C102]
          Length = 767

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 409/750 (54%), Gaps = 43/750 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 20  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 79

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 80  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 139

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 140 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 199

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 200 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 259

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 260 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 319

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 320 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 379

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 380 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 439

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 440 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 499

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 500 DMKQFGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 550

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 551 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 610

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+  S G  FI + ++++   + GK  + V S E +   V V     
Sbjct: 611 PVAMLTGQPEQHYLLSGSGGYGFIAKLADMVGRVKAGKVVMTVDSSETVLPPVAVYASSL 670

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 + +   + +LL FSI ++  M +G+G++L S  +G   + +        T +  
Sbjct: 671 INPDCKIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLAEGASLEHVMVTTSPEFTVVSV 730

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLV 740
             R           D+    GKRG  G ++
Sbjct: 731 GRRGAEHQEKLRIADID---GKRGKKGKVL 757


>gi|148267844|ref|YP_001246787.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393906|ref|YP_001316581.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257795589|ref|ZP_05644568.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9781]
 gi|258420495|ref|ZP_05683437.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9719]
 gi|295406299|ref|ZP_06816106.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297244528|ref|ZP_06928411.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
 gi|147740913|gb|ABQ49211.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946358|gb|ABR52294.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257789561|gb|EEV27901.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9781]
 gi|257843443|gb|EEV67850.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9719]
 gi|294968887|gb|EFG44909.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297178558|gb|EFH37804.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
 gi|315131158|gb|EFT87142.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727393|gb|EGG63849.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 800

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 215/756 (28%), Positives = 396/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDYSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  F  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|221141852|ref|ZP_03566345.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|302751186|gb|ADL65363.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 800

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/756 (28%), Positives = 396/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++ + I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKHMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKKNDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|148244443|ref|YP_001219137.1| DNA topoisomerase IV subunit A [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326270|dbj|BAF61413.1| DNA topoisomerase IV subunit A [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 745

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 267/747 (35%), Positives = 434/747 (58%), Gaps = 24/747 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N +  S+    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A 
Sbjct: 1   MNQINFEQQSIAQFSERAYLDYSMYVILDRALPFVGDGLKPVQRRIIYAMSELGLKSTAK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+S+V +AQ F  RYP I GQGN+G  D   S AA R
Sbjct: 61  FKKSARTVGDVLGKFHPHGDSACYESMVLMAQKFSYRYPFIDGQGNWGAPDNPKSFAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+++++ A+L+L  +++  V++ D ++    EP   P++ PNLL NG SGIAVGMAT 
Sbjct: 121 YTESKLSRYADLLLLEINQGTVNWTDNFDGSLQEPKNLPAQVPNLLLNGASGIAVGMATD 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +P HN+ E+  A + L+DNP I ++ +++ I  PD+PT   IV S   + + Y  G G  
Sbjct: 181 VPPHNLIEVVSACIVLLDNPSIDLDDIMQTIQAPDYPTDADIVSSSADLRQIYDTGYGSV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           ++RA +  E+       IV+  +P+QV  +++I +I   + AK++PL++DIRDES  +  
Sbjct: 241 KMRAVYQKEKGN-----IVIEALPFQVSGAKVISQIVVQMRAKKLPLVDDIRDESDHENP 295

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+   +   D D LM  +F  +++E  + +NMNV+ +   P+V+PL  +LKEWL++R
Sbjct: 296 TRIVIILHSNRFDVDALMLHLFATTELEKNYRVNMNVIGLDGKPRVLPLIPMLKEWLSYR 355

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            +V+  R + R   I  R+ ILKGLLIA LNI+E+IA+IR  DKPK V+++ F L   Q 
Sbjct: 356 MQVVTNRLTCRFDKIIVRLHILKGLLIALLNINEVIAVIREYDKPKLVLINHFKLNTIQA 415

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I++E   L+ E+++++ LL+S  +  + I  E++ + + F  
Sbjct: 416 EAILELKLRHLAKLEEVRIRTEQQELVLERKQLELLLSSNSRLKSLIKKELKIIIKDFGD 475

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+         +A  +  ++  E +TVV+SN+GW+R +K H +D + L++K G
Sbjct: 476 E-----RRSNIKSNVNVAQAFSEDNLVLAEDVTVVLSNKGWVRRVKGHDIDPTTLNYKAG 530

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS   ++   +   ++ + + G++Y+L A +L + RG GE +   +        +   + 
Sbjct: 531 DSYLTSVKGKSNKMVIFIDSTGRSYSLLAHSLSNSRGQGEPLTGKLSPPLGAQFIDIIMG 590

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGDHVAVVG 665
            ++  +L+ S  G  FI    +++++ + GK FL +S      ++  V  V    VA+  
Sbjct: 591 KTSQNILLSSDVGYGFIATFDDLLSSRQTGKVFLSLSKGAQVMRVINVDDVDNQLVALAT 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRS 718
              +LLIFSI ++P +S+GKG +L          +   ++ V      + L   ++    
Sbjct: 651 NRGRLLIFSISELPMLSKGKGNKLIQIPVNSAKTRQEFVASVCILFETQQLRV-NAGKHY 709

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 DL  ++  R   G L+PKG+ 
Sbjct: 710 LTIKFQDLNNYISNRACRGKLLPKGYQ 736


>gi|302537384|ref|ZP_07289726.1| DNA gyrase subunit A [Streptomyces sp. C]
 gi|302446279|gb|EFL18095.1| DNA gyrase subunit A [Streptomyces sp. C]
          Length = 818

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 230/768 (29%), Positives = 370/768 (48%), Gaps = 39/768 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   TPPPEDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDS 125
                + K AR+VGEV+GKLHPHGDQS+YD+LVR+AQPF  R PL+ G GNFG++   D 
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDQSIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE +M     L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG SGIAV
Sbjct: 128 PAAMRYTECKMADATSLMTESIDEDTVDFTANYDGQEREPVALPAAYPNLLVNGASGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ E+  AA  LI  PE  +E L+ ++ GPD PTGG IV     I ++Y  
Sbjct: 188 GMATNMAPHNLGEVIAAARHLIRYPEADLEALMRFVPGPDLPTGGRIV-GLSGIKDAYAN 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE+V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +
Sbjct: 247 GRGTFKIRATVSVEDVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++E ++ L+ ME  F +N   L     P  M L  +L+ +
Sbjct: 307 DRSHGLRLVIEIKNGFHPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTMGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           L HR EV+ RRS FR      R+ +++GLL+A L+IDE+I IIR+ D     K  ++ RF
Sbjct: 366 LDHRFEVVRRRSEFRRGKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMERF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q   IL+  LR L + +  +++SE D L  E +++  +L S       ++ E+  
Sbjct: 426 SLSEVQTQYILDTPLRRLTRFDRIELESERDRLTGEIDELTGILESDSALRKLVSAELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V + F        RRT   E S           +  +P  V++S+ G +    +      
Sbjct: 486 VAKKFGTE-----RRTVLLE-SAGTSVAAVPLEVADDPCRVLLSSTGLLARTANGDPLPV 539

Query: 542 AL--HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH---------GEAI 590
                  + D +   + A     +  +++ G+   L   +L                   
Sbjct: 540 EEGGARAKHDVIVSQVAATARADVGAVTSYGRLLRLAVIDLPQLPDTAAAPNLAGGAPVS 599

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           + L  L  ++ +V     D + + L + + +G    V   +  AN +     + +   ++
Sbjct: 600 EFLSGLEADETVVCLLSLDESSQGLALGTEQGVVKRV-VPDYPAN-KDELEVITLKEGDR 657

Query: 650 MKLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKI 705
           +   V  +   + +  + ++ +LL +   Q+    R   G+      +   +        
Sbjct: 658 IVGAVELRTGEEDLVFITDDAQLLRYPAGQVRPQGRPAGGMAGIKLAENAKVIHFSAVDP 717

Query: 706 CEGLTWIDSAGRSY--------NRSENDLLGWLGKRGGVGSLVPKGFP 745
                    AG            +           R   G    +   
Sbjct: 718 ARDAVVFTVAGSHGTLDDSVRSGKLTPFDQYPRKGRATGGVRCQRFLK 765


>gi|261207616|ref|ZP_05922301.1| DNA topoisomerase IV subunit A [Enterococcus faecium TC 6]
 gi|289565128|ref|ZP_06445581.1| DNA topoisomerase IV, A subunit [Enterococcus faecium D344SRF]
 gi|260077999|gb|EEW65705.1| DNA topoisomerase IV subunit A [Enterococcus faecium TC 6]
 gi|289163135|gb|EFD10982.1| DNA topoisomerase IV, A subunit [Enterococcus faecium D344SRF]
          Length = 817

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 212/754 (28%), Positives = 394/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+I  IR     K    +    F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 598 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 657

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 658 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 718 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 751


>gi|255066925|ref|ZP_05318780.1| DNA topoisomerase IV, A subunit [Neisseria sicca ATCC 29256]
 gi|255048750|gb|EET44214.1| DNA topoisomerase IV, A subunit [Neisseria sicca ATCC 29256]
          Length = 769

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 406/750 (54%), Gaps = 43/750 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 18  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 77

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 78  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 137

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 138 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 197

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 198 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 257

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 258 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 317

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 318 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 377

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 378 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKTDLMAAF 437

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 438 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 497

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 498 DMKQFGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 548

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 549 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 608

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+  S G  FI +  +++   + GK  + V S E +   + V     
Sbjct: 609 PVAMLTGQPEQHYLLSGSGGYGFITKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSL 668

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 + +   + +LL FSI ++  M +G+G++L S  +G   + +             
Sbjct: 669 INPDCKIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTEGASLEHVLVTTAAEFIVETV 728

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLV 740
             R           D+    GKRG  G ++
Sbjct: 729 GKRGAAHQEKLRICDIE---GKRGKKGKVL 755


>gi|315145097|gb|EFT89113.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2141]
          Length = 823

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 484 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSNIRSYTASKPEEIGMKEG 539

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753


>gi|258616476|ref|ZP_05714246.1| DNA topoisomerase IV subunit A [Enterococcus faecium DO]
          Length = 764

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/753 (28%), Positives = 394/753 (52%), Gaps = 29/753 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR     K    +    F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
              R   +           R   G  V +   +
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKK 749


>gi|329571650|gb|EGG53331.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1467]
          Length = 823

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 212/754 (28%), Positives = 388/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+  + ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNENELFSVMKKELREVKKQYGNP-- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 484 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753


>gi|256619113|ref|ZP_05475959.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200]
 gi|256598640|gb|EEU17816.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200]
          Length = 820

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 481 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750


>gi|167756989|ref|ZP_02429116.1| hypothetical protein CLORAM_02538 [Clostridium ramosum DSM 1402]
 gi|167703164|gb|EDS17743.1| hypothetical protein CLORAM_02538 [Clostridium ramosum DSM 1402]
          Length = 880

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 202/752 (26%), Positives = 375/752 (49%), Gaps = 24/752 (3%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            +S     V++ +  +SL   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M + 
Sbjct: 2   QLSKEKISVDKKII-MSLETIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKE 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G  +   ++KSA+ VG VIG  HPHGD SVYD++VRL+Q +  R PL+  QGN G+ID D
Sbjct: 61  GNLYSKPYRKSAKTVGNVIGNYHPHGDTSVYDAMVRLSQDWKMRVPLVDMQGNNGSIDND 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR++ +A  +L+ +D+D V     +++ + EP V P+ +PNLL NG +GI+
Sbjct: 121 PAAAMRYTEARLSAIAVELLKDLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGIS 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
            G AT IP HN++E+ +A +  I  P  S+EKL+E+I GPDFPTG I+   ++ I+ +++
Sbjct: 181 AGYATDIPPHNLEEVIDATIHRIKYPNCSLEKLMEFIKGPDFPTGAIVE-GKQGILNAFK 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   VR+   + E       IV+TEIPY+V K+ L+ KI E+   + I  + ++RDE
Sbjct: 240 SGRGKVIVRSTSEMIEEK-TMNKIVITEIPYEVNKAELVRKIDEIRFNRNIDGIIEVRDE 298

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      ++    + ++    +  ++  +D++  +     V    + P +M +  IL  +
Sbjct: 299 SDRTGLRIVIDLKKDINVQNTLNYLYKNTDLQKNYNY-NMVAIKDKRPVLMGVIEILDGY 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421
           +AH+ +V+ R S   +   + R  I++GL+ A   +DE++  IR          +   ++
Sbjct: 358 IAHQIDVVTRSSIHDLNKANERKHIVEGLIKAISILDEVVKTIRQSKDKSDAKNNLIEKY 417

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             +E Q +AI+ L+L  L   +   +++E   L      ++++LNS +     I  +++ 
Sbjct: 418 GFSEKQAEAIVMLQLYRLTNTDIVTLENENKELDNRIAYLNNILNSDEVLRKVIIDQLKG 477

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--- 538
           +K+ +        R          +    ++AMI  E I V I+  G+I+ + + S+   
Sbjct: 478 IKKKYPMPRLSKIR------DEVQEIKIDEKAMILSEDINVSITRDGYIKRISNRSIKAS 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDL 596
           +      KE D L     A+T D +LL +  G    +P   +   +     + +  L+ L
Sbjct: 532 EGIPFGKKENDYLVSMYQANTLDHLLLFTDAGNYLFIPVHKIEEFKWKDAGKHVSYLVKL 591

Query: 597 NHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKL 652
           N  + I+   +         +++ +  G        +  +    K    + + +++++  
Sbjct: 592 NAGEKIIGTILVKDFNLPLYVMLATKNGQIKRTNLKDFEVTRYSKPLKCMGLKNDDRVVD 651

Query: 653 VVKVTGDH-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710
           V     +  + +  +     ++S  ++  +  +  G+R  + K+  +  +  F      +
Sbjct: 652 VKLTDNNQGIILTTKAGYGALYSEQEVSIVGIKAAGIRAVNLKNDELVSLNIFNPLVSSS 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            I  +     +           R   G+L+ K
Sbjct: 712 LIVISEEGGVKRIKIGDITPCNRATKGTLLYK 743


>gi|163790378|ref|ZP_02184809.1| DNA topoisomerase IV subunit A [Carnobacterium sp. AT7]
 gi|159874282|gb|EDP68355.1| DNA topoisomerase IV subunit A [Carnobacterium sp. AT7]
          Length = 817

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 214/753 (28%), Positives = 389/753 (51%), Gaps = 29/753 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM+  G      F+KS
Sbjct: 6   EIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNVEGNTADKGFRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG VIG  HPHGD SVY+++VRL+Q + QR  LI   GN G++DGD  AA RYTEAR
Sbjct: 66  AKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKQREVLIEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +++ +D++ VDF   +++ D EP VFP+ +PNLL NG +GI+ G AT IPSHN
Sbjct: 126 LSKISAELVRDIDKETVDFILNFDDTDEEPTVFPASYPNLLVNGATGISAGYATDIPSHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P+ S+  L++Y+ GPDFPTG I+    + I ++Y  G+G   VR++
Sbjct: 186 LGEVIDATVHLIDDPDASVTDLMQYVKGPDFPTGAILQ-GVDGIKKAYETGKGKIIVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EEV  G   IV+ EIPY+V K+ L+ K+ E+ + KR+  + ++RDES  +   ++  
Sbjct: 245 TRIEEVRGGKEQIVINEIPYEVNKAVLVRKMDEIRLNKRVDGIAEVRDESDRNGLQIVVE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +   ++  +   +D++  +  NM  +   + P+ + +  +L+ +L H++EV+ RR
Sbjct: 305 LKKEANAGGILNYLLKNTDLQVAYNFNMVAIDK-KRPKQVGIVRMLQAYLDHKQEVITRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           +++ ++  + R  I+ GL+ A   +D++I  IR+       K  ++ RF  TE Q +AI+
Sbjct: 364 TNYNLRKAESRQHIVSGLIKALSILDQVIEAIRSSKDKKNAKENLIERFDFTEIQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +L+L  L   +   +++E D L  +    + +L S ++    +  E+ EVK+ ++     
Sbjct: 424 SLQLYRLTNTDITALENEADALNKDIMAYNKILGSSQELNKVMKKELIEVKKKYASP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGD 549
              R T  E    +     + +I  E + V ++  G+I+     S      + +  KEGD
Sbjct: 481 ---RLTVIEDEIEELKIDTELLIASEEVMVSVTKEGYIKRTSLRSYSASKPTEIGIKEGD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV 607
                   +T + +L+ ++ G     P   +   R       +   I    ++ +V  F 
Sbjct: 538 YPIYIQQLNTLNHLLIFTSKGNIIYRPIHEISDLRWKDMGDHLSQNIAFETDETVVKVFG 597

Query: 608 YD---STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVT--- 657
            +          ++ +G       SE +       K  + +K+  + +++  +V      
Sbjct: 598 LEKQLPPATFTFITKEGYIKQTAVSEYVIGRNYKNKSFSAIKLKTTTDELLNIVYTEKPL 657

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS--DVICFKICEGLTWIDS 714
              V +V      L + +D++P +  +  GV+  + KDG      V+          +  
Sbjct: 658 SKDVFLVTNRGFGLRYPLDEVPTVGAKAAGVKSINLKDGDYVVNGVLVDTTASKAELMIL 717

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
             R   +  N L      R   G L+ +   ++
Sbjct: 718 TQRGSVKKMNILDFEPLGRAKRGLLLLRELKKN 750


>gi|229545772|ref|ZP_04434497.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|307270969|ref|ZP_07552252.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248]
 gi|307274909|ref|ZP_07556072.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134]
 gi|307278017|ref|ZP_07559101.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860]
 gi|307289155|ref|ZP_07569111.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109]
 gi|307291947|ref|ZP_07571816.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411]
 gi|312899464|ref|ZP_07758794.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470]
 gi|312903357|ref|ZP_07762537.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635]
 gi|312951547|ref|ZP_07770443.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102]
 gi|15982571|dbj|BAB69481.1| topoisomerase IV A subunit [Enterococcus faecalis]
 gi|229309084|gb|EEN75071.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|306496945|gb|EFM66493.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411]
 gi|306499864|gb|EFM69225.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109]
 gi|306505414|gb|EFM74600.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860]
 gi|306508357|gb|EFM77464.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134]
 gi|306512467|gb|EFM81116.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248]
 gi|310630513|gb|EFQ13796.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102]
 gi|310633233|gb|EFQ16516.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635]
 gi|311293334|gb|EFQ71890.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470]
 gi|315027217|gb|EFT39149.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2137]
 gi|315029335|gb|EFT41267.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4000]
 gi|315034018|gb|EFT45950.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0017]
 gi|315037027|gb|EFT48959.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0027]
 gi|315147314|gb|EFT91330.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4244]
 gi|315152430|gb|EFT96446.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0031]
 gi|315164064|gb|EFU08081.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1302]
 gi|315168986|gb|EFU13003.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1341]
 gi|315172255|gb|EFU16272.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1346]
 gi|315575817|gb|EFU88008.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309B]
 gi|315577657|gb|EFU89848.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0630]
 gi|315580469|gb|EFU92660.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309A]
 gi|327535183|gb|AEA94017.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           faecalis OG1RF]
          Length = 823

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 484 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753


>gi|315169780|gb|EFU13797.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1342]
          Length = 823

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDINAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 484 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753


>gi|229552217|ref|ZP_04440942.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539628|ref|YP_003174127.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus Lc 705]
 gi|229314403|gb|EEN80376.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151304|emb|CAR90276.1| DNA topoisomerase IV, A subunit [Lactobacillus rhamnosus Lc 705]
          Length = 813

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 210/760 (27%), Positives = 370/760 (48%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F
Sbjct: 1   MANQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYT
Sbjct: 61  RKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP
Sbjct: 121 EARLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  A L L+ +P+  +  L++Y+ GPDFPTGG I++  + I ++Y  GRG   V
Sbjct: 181 PHNLREVVNAILYLLKHPQADLADLMQYVKGPDFPTGG-IIQGLDGIKQAYETGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R  +E +  G   IVVTEIPY V K+++I+KI EL + K++  + ++RDES      V
Sbjct: 240 RSRTHIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRLNKKVDGIAEVRDESDRFGLSV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  ++    P+++ L  +L+ ++AHRR+V+
Sbjct: 300 VIELKKEADAHGILNYLFKNTDLQITYNFNMVAIADM-QPKLLGLKAMLEAYVAHRRDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ + +     R  I++GL+     +D++IA IR          +   +F  +E Q +
Sbjct: 359 TRRTRYELNKAQARQHIVEGLIKMLSILDQVIAAIRASSDKGDAKRNLVKQFDFSEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +   
Sbjct: 419 AIVSLQLYRLTNTDITALQDEAAQLAKAIAEYQDILAQPASRDRVIEKELKRIAKEYGD- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                RR++  +             +  E + V +S  G+++     S    D      K
Sbjct: 478 ----DRRSSI-QAEIETLEVATTVTVADETVMVQVSRDGYVKRSSLRSYQAVDPEDNGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
             D         T   + +++  G     P         +  GE +   + L  ++ ++ 
Sbjct: 533 PNDLAIFTGELSTLQHLYIVTNAGNIIYRPVYEISDARWKDTGEHLSQTVGLGTDEKVLA 592

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVS-SEEKMKLVVKVT 657
            F +D        ++ SS G       S++       RK    +K+      +      T
Sbjct: 593 VFAFDQLDLAGTFVLGSSDGYIKQTALSDLQPQRTYKRKPMMAMKLKTPGAVVTNAYFTT 652

Query: 658 G--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWID 713
                V VV  +   L F + ++  +  R  GV+    K +  + + I  K  E      
Sbjct: 653 DQAQDVFVVSRHAYGLDFPLAEVSTVGARATGVKSMDLKPEDEVVNFILVKQPEKAVVGI 712

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
              R   +           R   G LV +   R   + ++
Sbjct: 713 LTQRGAFKRMALSEVGQMSRARRGLLVLRELKRDPHRIVA 752


>gi|257416143|ref|ZP_05593137.1| DNA topoisomerase IV subunit A [Enterococcus faecalis AR01/DG]
 gi|257157971|gb|EEU87931.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ARO1/DG]
          Length = 820

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 214/754 (28%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LIDNP  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDNPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 481 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSVRSYTASKPEEIGMKEG 536

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750


>gi|229549962|ref|ZP_04438687.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|229304875|gb|EEN70871.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|315158126|gb|EFU02143.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0312]
          Length = 823

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 484 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753


>gi|257079060|ref|ZP_05573421.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1]
 gi|294781700|ref|ZP_06747035.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1]
 gi|256987090|gb|EEU74392.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1]
 gi|294451252|gb|EFG19719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1]
          Length = 820

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 212/754 (28%), Positives = 388/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+  + ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNENELFSVMKKELREVKKQYGNP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 481 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750


>gi|256762549|ref|ZP_05503129.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3]
 gi|256683800|gb|EEU23495.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3]
          Length = 820

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDINAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 481 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750


>gi|57866862|ref|YP_188505.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis RP62A]
 gi|251810788|ref|ZP_04825261.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876209|ref|ZP_06285076.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis SK135]
 gi|293366679|ref|ZP_06613355.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81674759|sp|Q5HPI5|PARC_STAEQ RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|57637520|gb|AAW54308.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis RP62A]
 gi|251805716|gb|EES58373.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295234|gb|EFA87761.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis SK135]
 gi|291318980|gb|EFE59350.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329735889|gb|EGG72168.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis VCU028]
          Length = 800

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 220/748 (29%), Positives = 403/748 (53%), Gaps = 23/748 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  L  ID P+I+I +L++YI GPDFPTGGII    E I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQG-IEGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   ++  SD++  +     V      P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDANSESIKNYLYKNSDLQISYNF-NMVAISEGRPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ +  TE Q +
Sbjct: 359 TNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ M+  E + + ++  G+I+   + S     ++ +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P      +  +  G+ I  ++ ++ ++++V 
Sbjct: 533 DGDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    + +    ++ +  G       S+       K    +KV  ++++  VV++  D 
Sbjct: 593 VYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S +++ +   R  GV+  + KD     V+   + +  + I    R 
Sbjct: 653 LITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYV-VMTEDVNDSDSIIMVTQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  +  +    KR   G  + K   +
Sbjct: 712 AMKRIDFNVLQEAKRAQRGITLLKELKK 739


>gi|224543252|ref|ZP_03683791.1| hypothetical protein CATMIT_02452 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523785|gb|EEF92890.1| hypothetical protein CATMIT_02452 [Catenibacterium mitsuokai DSM
           15897]
          Length = 849

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 217/745 (29%), Positives = 379/745 (50%), Gaps = 24/745 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+N+  +SL   + +R+  Y+   I++RA+PD+RDG KPV RRI++AM + G      
Sbjct: 1   MTEKNII-MSLEDIMGDRFGRYSKYIIQDRALPDVRDGLKPVQRRILYAMWKEGNLPNKP 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R PL+  QGN G+ID D AAA RY
Sbjct: 60  YRKSAKTVGTVIGNYHPHGDSSVYEAMVRLSQDWKMRMPLVDMQGNNGSIDNDPAAAMRY 119

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+  +A  +++ +D++ V     +++ + EP VFP+K+PNLL NG +GI+ G AT I
Sbjct: 120 TEARLAPIALDLIKDIDKETVPMALNFDDTEYEPTVFPAKYPNLLVNGATGISAGYATDI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +A +  I +P  S ++L ++I GPDFPTG I+      I  + R GRG   
Sbjct: 180 PPHNLEEVIDATIYRIKHPHCSFDELHQFIKGPDFPTGAIVE-GASDIATALRTGRGKVV 238

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+R+ + E       I++TEIPY+V K+ L+ K+AE+   + I  + ++RDES  +   
Sbjct: 239 VRSRYKIVEQK-NINQILITEIPYEVNKAELVRKMAEIQFNRDIDGIIEVRDESDRNGLC 297

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     + +D    +   F  +D++  +          + P +M ++ IL  ++ H  EV
Sbjct: 298 IAVDLKKDVDARNTLNYFFKNTDLQKNYNY-NMTAIKDKRPVLMGIEDILDGYIKHECEV 356

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQV 428
           + +RS F +     R  I++GL+ A   +DE++  IR           +++ F  TE Q 
Sbjct: 357 VTKRSIFDLNKAQEREHIVEGLIKAISILDEVVKTIRASKDKADAKVNLMNAFGFTERQA 416

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   +++E   L A  E ++++L S K     I  E++ VK+ +  
Sbjct: 417 EAIVTLQLYRLTNTDIVSLENEQKELQALIESLNAILTSEKVLRKVIIDELKGVKKKYPT 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                  R T  +    D +  QQAMI  E + V I+  G+ + + + S    D +    
Sbjct: 477 P------RLTEIKDEIMDTSVNQQAMIISEDVYVSITRDGYFKKISTRSYKASDENTFGK 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIV 603
           K+ D L     A+T D IL  +  G    +P   L   +     + +  LI L +++ I+
Sbjct: 531 KDTDMLVDLFEANTLDVILSFTNKGNYCFVPVYKLEDFKWKDLGKHLSYLIKLGNDEKII 590

Query: 604 T---AFVYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                  +D    +++ S  G    V   +  ++   K    + +   +++  V    G 
Sbjct: 591 GNILVKSFDLDQYVVLSSKNGQIKRVSIKDFNVSRFSKPLKCMNLKDNDELISVDISDGT 650

Query: 660 H-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             +  V +     ++S D+I  +  +  GV+  + +D  ++ +  F      + +     
Sbjct: 651 KGIITVTKAGYGTLYSEDEISILGVKAGGVKGINMRDDEVAFMSVFDPSIASSLLLVLNP 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPK 742
           ++ +  +        R   G+L+ K
Sbjct: 711 AHFKRIHISDIPACHRATKGTLLFK 735


>gi|29376173|ref|NP_815327.1| DNA topoisomerase IV subunit A [Enterococcus faecalis V583]
 gi|255972744|ref|ZP_05423330.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1]
 gi|256853175|ref|ZP_05558545.1| topoisomerase IV A subunit [Enterococcus faecalis T8]
 gi|256959029|ref|ZP_05563200.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5]
 gi|257085133|ref|ZP_05579494.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1]
 gi|257086694|ref|ZP_05581055.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6]
 gi|257089934|ref|ZP_05584295.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188]
 gi|257419345|ref|ZP_05596339.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11]
 gi|300860448|ref|ZP_07106535.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|29343636|gb|AAO81397.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis V583]
 gi|255963762|gb|EET96238.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1]
 gi|256711634|gb|EEU26672.1| topoisomerase IV A subunit [Enterococcus faecalis T8]
 gi|256949525|gb|EEU66157.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5]
 gi|256993163|gb|EEU80465.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1]
 gi|256994724|gb|EEU82026.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6]
 gi|256998746|gb|EEU85266.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188]
 gi|257161173|gb|EEU91133.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11]
 gi|300849487|gb|EFK77237.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11]
          Length = 820

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 481 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750


>gi|323480779|gb|ADX80218.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis 62]
          Length = 820

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 481 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750


>gi|257082501|ref|ZP_05576862.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol]
 gi|256990531|gb|EEU77833.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol]
          Length = 820

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 388/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDYPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 481 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750


>gi|290956919|ref|YP_003488101.1| GyrA-like gyrase subunit [Streptomyces scabiei 87.22]
 gi|260646445|emb|CBG69542.1| GyrA-like gyrase subunit [Streptomyces scabiei 87.22]
          Length = 818

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 223/766 (29%), Positives = 375/766 (48%), Gaps = 39/766 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL  
Sbjct: 11  PDDAFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVRLAQPF  R PL+ G GNFG++   D  A
Sbjct: 71  DRGYVKCARVVGEVMGKLHPHGDSSIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM     L+ + ++E+ VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMADATSLMTESIEENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN+ E+  AA  LI  P   ++ L++++ GPD PTGG IV     I ++Y  GR
Sbjct: 191 ATNMPPHNLGEVIAAARHLIRYPNADLDTLMKHVPGPDLPTGGRIV-GLSGIRDAYATGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   V+ V      ++VTE+P+ V   ++I KI +L+ AK++  + D++D +  
Sbjct: 250 GTFKIRATVTVDNVTARRKGLIVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVKDLTDR 309

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +L 
Sbjct: 310 AHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           HR EV+ RRS FR      R+ +++GLL A ++IDE+I +IR+ D     K  ++ RF+L
Sbjct: 369 HRFEVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSDNSAQAKERLIERFAL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q   IL+  LR L + +  +++SE + L  E  ++  +L S  +    ++ E+  V 
Sbjct: 429 SDIQTQYILDTPLRRLTRFDRIELESEKEKLNTEIAELTRILESDAELRKLVSGELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F        RRT   E S   +       +  +P  V++S+ G +    S     +  
Sbjct: 489 KKFGTE-----RRTVLLE-SSGTQVAAVPLQVADDPCRVLLSSTGLLARTASAEPFTADE 542

Query: 544 --HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--------EAIQLL 593
                + D +  A+ A     +  +++ G+   L   +L                 +   
Sbjct: 543 DGRRTKHDVIVSAVPATARGEVGAVTSTGRLLRLNVVDLPQLPDTSAAPNLSGGAPLAEF 602

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + L   + +V     D +   L + + +G    V       + ++    + +   +++  
Sbjct: 603 LTLQDGETLVCLMTLDESSPGLAIGTEQGVVKRVVPD--YPSNKEELEVISLKEGDRIVG 660

Query: 653 VV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI----------SD 699
            V  +   + +  + ++ +LL +   Q+    R   G+      +G             D
Sbjct: 661 AVELRTGEEDLIFITDDAQLLRYQAAQVRPQGRPAGGMAGIKLTEGAKVISFTAIDPAVD 720

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            + F +      +D + ++  +           R   G    +   
Sbjct: 721 AVVFTVAGSRGTLDDSVQTTAKLTPFDQYPRKGRATGGVRCQRFLK 766


>gi|315155703|gb|EFT99719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0043]
          Length = 823

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 211/754 (27%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ ++++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 484 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G ++ +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMLLRELKKN 753


>gi|297571343|ref|YP_003697117.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931690|gb|ADH92498.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 804

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 212/757 (28%), Positives = 360/757 (47%), Gaps = 40/757 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++  + +   +   +L Y+ S I  RA+PD RDG KPV RRI+  M  MGL       K
Sbjct: 7   EHIMDIDVSEEMRNSFLEYSYSVIYSRALPDARDGLKPVQRRILFQMDSMGLKPDRGHVK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S+R+VG+V+G+LHPHGD ++YD++VRLAQ F  R P + G GNFG+ D D  AA RYTE 
Sbjct: 67  SSRVVGDVMGRLHPHGDAAIYDAMVRLAQDFSLRLPFVDGHGNFGSPD-DGPAAPRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  +   + ED VD    Y+    EP V P+  P+LL NG+SGIAVGMAT++  H
Sbjct: 126 RMAPAALAMTASLGEDVVDMVPNYDNTYQEPEVLPAAIPSLLVNGSSGIAVGMATNMAPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+   A  L++NP+  +E+L+ YI GPD P GG IV   + I ++Y+ GRG FR RA
Sbjct: 186 NLNEVIAGARFLLENPDACLEELMRYIPGPDLPDGGKIV-GIDGIRQAYKTGRGIFRTRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
              +E V      I+ TE+PY     ++IEKI + + +K++  +  +++ +       ++
Sbjct: 245 TAHIENVSPRKKGIIFTELPYLTGPEKIIEKIKDGVSSKKLQGISGVQNLTDRHHGTRLV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                + +P+ ++ +++  + +E  F +N   L     P+ M L  IL+ +L HRR V  
Sbjct: 305 VEVKNAFNPEAVLAALYQHTPLEESFGINNVALV-EGQPRTMGLKEILQVFLDHRRSVTK 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           RR  FR++    R+ +++GLLIA ++ID++IAIIR+ +            F L++ Q D 
Sbjct: 364 RRCEFRLRKAQDRLHLVEGLLIAIVDIDDVIAIIRSSEDSATAANRLISVFDLSQPQADY 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L K  + ++++E ++L    +++ ++L S  +    I+ E+ +V   +    
Sbjct: 424 ILELRLRRLTKFSQIELETERNSLQETIDELLAILGSEDRMRQLISTELADVARQYGTP- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQA--MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
               RRT   E     K+        I  +P  V++S  G I  +             + 
Sbjct: 483 ----RRTVLLEADAVQKSKANAPKLKITDDPCRVLLSATGKIARIVGGEPPRREGPRAQH 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA--------IQLLIDLNHNQ 600
           D+L   +       I +++T G  + L   ++ +      A        +  L+ +  N+
Sbjct: 539 DALASVVSTTNLSDIGVVTTAGNIHRLNVLDIPAMPDTESAPSLAAGAQLTDLLLMEPNE 598

Query: 601 DIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           + +     + +  +L + +++G    V         +     + +   +++         
Sbjct: 599 EPLAIISLEESDTVLTLATAQGKIKRVALD---PPNKSQFDAITLLDGDRVIGAGVSGDT 655

Query: 660 HVA-VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT---WIDS 714
            V  +V  + +LL F  + +    R G+G+      DG     +     + L     +  
Sbjct: 656 DVIVLVTSDAQLLRFDANAVRPQGRSGQGIAGIRVADGAQVIALGIVPNDDLAGHGVVTI 715

Query: 715 ---------AGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                          +           RG  G    +
Sbjct: 716 ASSSDALPGTTAGSAKVTPLDRYPAKGRGTGGVRAQR 752


>gi|310820412|ref|YP_003952770.1| type II DNA topoisomerase subunit A [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393484|gb|ADO70943.1| Type II DNA topoisomerase, A subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 794

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 253/741 (34%), Positives = 401/741 (54%), Gaps = 25/741 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFK 73
           EN +   L      RYL YALS I  RA+PD+RDG KPV RR+++ M  +  L   A ++
Sbjct: 35  ENFQPAPLAEEARRRYLNYALSVITSRALPDVRDGLKPVQRRVLYGMYHDHRLTQDAKYQ 94

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA++VG ++G+ HPHGD S+YD+LVRLAQ F  RYPL+ G GNFG++DGD+AAA RYTE
Sbjct: 95  KSAKVVGTIMGQYHPHGDASIYDALVRLAQDFSLRYPLVDGHGNFGSLDGDAAAAMRYTE 154

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+  ++  +L  + +  V FR  Y+   SEP+V PS+ P LL NGT+GIAVGMAT+IP 
Sbjct: 155 CRLAGISGEMLTELGKKTVGFRPNYDGTLSEPIVIPSRLPQLLMNGTTGIAVGMATNIPP 214

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+C+A  ALI+N  ++++ L++++ GPDFPTGG I+ S+  + E Y  G+G  R+R
Sbjct: 215 HHLGELCDALAALIENGNLAVKDLMKFVKGPDFPTGGQILNSKAELREIYETGQGSVRIR 274

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
             + +E+V +G   I++T IPY V KS L+ KI +L+  +++PLL D+RDES ++VRIVL
Sbjct: 275 GEYALEDVKKGGQQIIITSIPYTVNKSTLVSKIGDLVRERKLPLLLDVRDESTKEVRIVL 334

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-----RVPQVMPLDGILKEWLAHR 368
             K  +  P+L+M  ++  + ++T F +N+  L          P+ + L  IL+ +L  R
Sbjct: 335 EFKRDA-SPELVMAYLYKHTPLQTNFGVNLTCLVPTDNPEVGAPKRLDLKSILQYFLDFR 393

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ +R    +  + +RV IL+G    Y  +DE+I IIR           +++RF L E
Sbjct: 394 FEVVTKRFQHELGELQKRVHILEGFEKVYDALDEMIRIIRASEGKQDAAKKLMARFKLDE 453

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            QVDAIL ++L  L +LE   I+ EL     E ++I+ +L   ++ W  +  E+ E+K  
Sbjct: 454 VQVDAILEMKLYKLARLEILVIQEELKQKRLEVKRIEGILKDKRKLWGTVKDELAEIKAT 513

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           ++      +RRT        +    + A I  E   VV++  GWI+ ++    D S    
Sbjct: 514 YND-----KRRTRIGGAGSEEVEFSEDAFIVDEDAHVVLTRDGWIKRVRE-VKDPSTTRL 567

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           +EGD++   L       ++L S  G AY     ++ +  G+G+ +Q L   +  + IV A
Sbjct: 568 REGDAVMTVLAGSLKSNLVLFSNFGAAYVTRFNDVPASTGYGDPVQKLFKFDDGERIVGA 627

Query: 606 FVYDS----TCKLLVVSSKGNAFIVEES-EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
              DS      KL+ V+  G          +  +TR G+ + K    +++  V  V    
Sbjct: 628 LSLDSRLPRPQKLVAVTKDGLGLRFPLEGHVEVSTRSGRRYAKTGEGDEIIGVQPVGEKD 687

Query: 661 VAVV-GENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISD--VICFKICEGLTWIDSAG 716
           +  V  E     +    ++ E+   GKGV +   + G      +      +  +      
Sbjct: 688 LLAVLTERTYATVCRAAEVNELAGPGKGVLVIKVEPGDRVMEFLAVAPGQKDASITFETQ 747

Query: 717 RSYNRSENDLLGWLGKRGGVG 737
           +    + +     +  RGG G
Sbjct: 748 KGRKLTLSPAKYEVTGRGGKG 768


>gi|242242635|ref|ZP_04797080.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis W23144]
 gi|242233771|gb|EES36083.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis W23144]
          Length = 800

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 221/748 (29%), Positives = 402/748 (53%), Gaps = 23/748 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  L  ID P+I+I +L++YI GPDFPTGGII    E I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQG-IEGIKKAYETGKGRVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   ++  SD++  +     V      P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDANSESIKNYLYKNSDLQISYNF-NMVAISEGRPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ +  TE Q +
Sbjct: 359 TNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ M+  E + + ++  G+I+   + S     ++ +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P      +  +  G+ I  ++ ++ ++++V 
Sbjct: 533 DGDRLLKHEAVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    + +    ++ +  G       S+       K    +KV   +K+  VV++  D 
Sbjct: 593 VYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDNDKLINVVRLETDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S +++ +   R  GV+  + KD     V+   + +  + I    R 
Sbjct: 653 LITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYV-VMTEDVNDSDSIIMVTQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  +  +    KR   G  + K   +
Sbjct: 712 AMKRIDFNVLQEAKRAQRGITLLKELKK 739


>gi|49483548|ref|YP_040772.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295427869|ref|ZP_06820501.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|81651177|sp|Q6GH50|PARC_STAAR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|49241677|emb|CAG40365.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295128227|gb|EFG57861.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 800

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/756 (28%), Positives = 397/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|294668149|ref|ZP_06733256.1| DNA topoisomerase IV, A subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309857|gb|EFE51100.1| DNA topoisomerase IV, A subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 768

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 406/750 (54%), Gaps = 43/750 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 18  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 77

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 78  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 137

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 138 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 197

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 198 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 257

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 258 ARGQWRVIVTELPPNTNSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 317

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 318 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 377

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  F +  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 378 QEWLDFRVVTVTRRLKFCLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 437

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 438 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 497

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 498 DMKQFGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 548

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 549 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 608

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+  S G  FI + ++++   + GK  + V S E +   + V     
Sbjct: 609 PVAMLTGQPEQHYLLSGSGGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPIAVYASSL 668

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 V +   + +LL FSI ++  M +G+G++L S  DG   + +             
Sbjct: 669 INPDCKVVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTDGASLEHVLVTTSAEFIVETV 728

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLV 740
             R           D+    GKRG  G ++
Sbjct: 729 GKRGAAHQEKLRICDID---GKRGKKGKVL 755


>gi|257422561|ref|ZP_05599551.1| topoisomerase IV subunit A [Enterococcus faecalis X98]
 gi|257164385|gb|EEU94345.1| topoisomerase IV subunit A [Enterococcus faecalis X98]
          Length = 820

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 211/754 (27%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ ++++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 481 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G ++ +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMLLRELKKN 750


>gi|114152112|sp|P0C1U9|PARC_STAAU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1777318|dbj|BAA11085.1| DNA topoisomerase IV GrlA subunit [Staphylococcus aureus]
          Length = 800

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 215/756 (28%), Positives = 396/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  F  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|224826726|ref|ZP_03699826.1| DNA topoisomerase IV, A subunit [Lutiella nitroferrum 2002]
 gi|224600946|gb|EEG07129.1| DNA topoisomerase IV, A subunit [Lutiella nitroferrum 2002]
          Length = 791

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 272/750 (36%), Positives = 414/750 (55%), Gaps = 36/750 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L    E  YL YA+S +K RA+P++ DG KPV RRI++AM +MGL  GA   KSAR+V
Sbjct: 37  IPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMRDMGLTHGAKPVKSARVV 96

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GE++GK HPHGD S Y++LVR+AQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 97  GEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 156

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L  +D   VDF   Y+    EP + P++ P +L NG SGIAVG+AT IP HN+ E+
Sbjct: 157 AELLLSEIDMGTVDFVPNYDGAFDEPALLPARLPMVLLNGASGIAVGLATEIPPHNLTEV 216

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+AL+DNPE+S  +L+ Y+ GPDFP GG I+   E I+ +Y  GRG  RVRA+W VE
Sbjct: 217 AGAAVALLDNPELSTAELMAYVPGPDFPGGGQIITPVEDILAAYESGRGSVRVRAKWEVE 276

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI------------------ 301
           ++ RG W ++VTE+P      +++ +I E    K     + +                  
Sbjct: 277 KLARGQWRVIVTELPPGSSAQKVLAEIEEATNPKVKSGKKTLTQDQQNLKSLMLSLLDRV 336

Query: 302 --RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
               +S   VR+V  PK+   DPD  +  +   + +E    LN+ ++ +   P    L  
Sbjct: 337 RDESDSDSPVRLVFEPKSSRQDPDEFINVLLAQTSLEGNAALNLVMIGLDGRPGQKGLKP 396

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EWLA RR  + RR   R+  +D+R+ IL+G +IA+++IDE+I +IR  D+PKP ++ 
Sbjct: 397 ILAEWLAFRRRTVTRRLEHRLSQVDKRIHILEGRMIAFIHIDEVIRVIRESDEPKPDLIK 456

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q + IL +RLR L +LE ++++ EL  L  E+E +  LL +       +  EI
Sbjct: 457 AFGLTEVQAEDILEIRLRQLARLEGFKLEKELSELREEREGLRHLLATPDALTGLMRDEI 516

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +     +  +     RR+      +A +  +    I  EP+T+++S +GWIR+   H+VD
Sbjct: 517 QADAAKYGDA-----RRSEI----KAAERAVLTQTIADEPVTIILSQKGWIRARVGHNVD 567

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           LSAL FK+GD+L   +   T   +++L + G+AYT+    + +GRG G  +  L++L   
Sbjct: 568 LSALSFKDGDALATVVETRTVWPVIVLDSKGRAYTVDPAVVPTGRGDGVPVASLVELQDG 627

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                      + + ++ +S G  FI +  ++    + GK F+ +   E +   + V   
Sbjct: 628 AKPAQLLSGPDSTRFVLANSGGYGFIAKIGDMAGRVKAGKAFMTLEDGESVLAPLHVPAS 687

Query: 660 ------HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                  +    +N +LL F   ++ E+++G+G+ L    +G     I     +      
Sbjct: 688 AKLDALRLVAAADNGRLLAFPAGELKELAKGRGLMLMQLGEGEALTAIGLVGGDKAQLTA 747

Query: 714 SAGRSYNRSEND-LLGWLGKRGGVGSLVPK 742
            + R     E   L  + GKR   G L+PK
Sbjct: 748 QSVRGKQSEEKVALAEYDGKRARRGQLLPK 777


>gi|89070809|ref|ZP_01158057.1| DNA topoisomerase IV subunit A [Oceanicola granulosus HTCC2516]
 gi|89043596|gb|EAR49804.1| DNA topoisomerase IV subunit A [Oceanicola granulosus HTCC2516]
          Length = 808

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 317/809 (39%), Positives = 444/809 (54%), Gaps = 66/809 (8%)

Query: 6   ISNSNTLVEENVKA---VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +S++     ENV       LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM 
Sbjct: 1   MSDTPDP--ENVSPDLIEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMR 58

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+ L     F+KSA+I G+V+G  HPHGDQ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 59  ELRLSSAGGFRKSAKISGDVMGNYHPHGDQAIYDAMARLAQDFNVRYPLVDGQGNFGNID 118

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT  AE +L G++EDAVDFR  Y+   +EPVV P+ FPNLLANG+SG
Sbjct: 119 GDNPAASRYTEARMTAAAEALLDGLNEDAVDFRANYDGTLTEPVVLPAAFPNLLANGSSG 178

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A L LI  P+   E LL YI GPDFPTGG++VE RESI E+
Sbjct: 179 IAVGMATNIPPHNIDELVQACLHLIKTPDARDETLLNYIPGPDFPTGGVLVEPRESIAET 238

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG FR+R RW  E++GRG W I+VTEIP+QVQKS+LIEK+AE+I  K++P+L D+R
Sbjct: 239 YRTGRGAFRLRCRWHTEDLGRGQWQIIVTEIPFQVQKSKLIEKLAEVIQTKKVPILGDVR 298

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESAED+RIVL P+++++DPD+LM  ++  SD+ETRF LNMNVL  G  P+V  L  +L+
Sbjct: 299 DESAEDIRIVLEPRSKNVDPDVLMGMLYRSSDLETRFSLNMNVLIDGLTPKVCSLKEVLR 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            +L HRREVL RRS  RM  ID R+E+L+GL++A+L++D +I IIR +D PK  ++    
Sbjct: 359 AFLDHRREVLLRRSRHRMAKIDHRLEVLEGLIVAFLHLDRVIDIIRYDDDPKAALMYEDW 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG------KQQWNQIA 476
              +Q                    ++ L  +      + ++L          +++    
Sbjct: 419 GRPHQSTIARATSEADYVSPLAGVDRAGLVLVADPAAGVPAVLGDEPVQAGVPRRYAGRE 478

Query: 477 CEIREVKEI-FSKSTDLGRRRTTFCEVSRADKATLQQAMI------------EKEPITVV 523
             + +V+            RR    E+       + +                K    + 
Sbjct: 479 QGLSDVQAEAILNMRLRSLRRLEELELVAERDRLMAERAELEDLLETGSLQWAKIAEQLR 538

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                +       +   +     E + + +          ++ S  G    L     L+ 
Sbjct: 539 EVRAQFGAKAPGGARRTTFAEAGEVEEVPLEAMIEREPVTIVCSQMGWIRALTGHIDLNR 598

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK------GNAFIVEES-------- 629
               +       + H +      ++ S  +   +S+       G    V           
Sbjct: 599 ELKFKDGDGPRFIFHAETTDRLLLFGSNGRFYTLSAANLPGGRGMGEPVRLMVDLPNEAR 658

Query: 630 --EIIANTRKGKTFLKVSSEE------KMKLVVKVTGDHVA------------------- 662
             ++  +   G+  +  S+ +      +  +     G  V                    
Sbjct: 659 IVDLFIHRPGGRLLVASSAGDGFVVAEEEVVAQTRAGKQVLNVRAPAQARICHPVSGDHL 718

Query: 663 -VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
            VVGENRK+L+F +DQ+PEM RGKGVRLQ YKDGG+SD   F + EGL+W D AGR+   
Sbjct: 719 AVVGENRKVLVFPLDQLPEMGRGKGVRLQKYKDGGLSDATTFTLAEGLSWRDPAGRTRTV 778

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             ++L  W G R G G + P+GFPR  +F
Sbjct: 779 GPDELAEWQGNRAGSGRMAPRGFPRDNRF 807


>gi|302522333|ref|ZP_07274675.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
 gi|302431228|gb|EFL03044.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
          Length = 822

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 225/764 (29%), Positives = 374/764 (48%), Gaps = 37/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                EE +  + +   ++  YL YA S I  RA+PD RDG KPV RRI++ M+EMGL  
Sbjct: 17  DEADFEERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRP 76

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++   D  A
Sbjct: 77  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPA 136

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+RM   A L+ + +DE+ VDF   Y+ ++ EP+  P+ +PNLL NG SGIAVGM
Sbjct: 137 AMRYTESRMADAAMLMTESIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGM 196

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++  HN+ E+  AA  LI +P   ++ L++Y+ GPD PTGG IV     I ++Y  GR
Sbjct: 197 ATNMAPHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGGRIV-GLAGIRDAYANGR 255

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F+ RA   VE V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +  
Sbjct: 256 GSFKTRATVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDR 315

Query: 308 D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +L 
Sbjct: 316 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKEMLEVYLD 374

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSL 423
           HR  V+ RRS FR      R+ +++GLL+A ++IDE+I +IR+ +            FSL
Sbjct: 375 HRFSVVRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEHFSL 434

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q   IL+  LR L + +  +++SE D L AE E++ ++L S  +    ++ E+  V 
Sbjct: 435 SETQTQYILDTPLRRLTRFDRIELESERDRLNAEIEELTAILESDTELRKLVSGELAAVA 494

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS-VDLSA 542
           + +        RRT   E S           +  +P  V++S+ G I        +   +
Sbjct: 495 KKYGTP-----RRTVLLE-SADTPVAAIPLQVADDPCRVLLSSTGVIARTPGTEPLQEGS 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG-------HGEAIQLLID 595
               + D ++ A+ A     +  +++ G+   +   +L             G  +   + 
Sbjct: 549 AKRAKHDVIRSAVPATARGEVGAVTSAGRLLRITVVDLPQLAEGAGPALVGGAPVAEFVR 608

Query: 596 LNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           L  ++ +V     D +   L + +++G    V   +  AN  +    + +   +++    
Sbjct: 609 LEGDETLVCLCTLDESSPGLAIGTAQGVVKRV-VPDYPANREE-LEVITLREGDRIVGAA 666

Query: 655 --KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI----------SDVI 701
             +   + +  + ++ +LL F    +    R   GV      DG             D  
Sbjct: 667 ELRTGEEDLVFITDDAQLLRFQASAVRPQGRPAGGVAGVKLADGAKVLSFDVVDPAVDAA 726

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            F +      +D + ++  +           R   G    +   
Sbjct: 727 VFTVAGSRGTLDDSVQTTAKLTPFDQFPRKGRATGGVRCQRFLK 770


>gi|333023996|ref|ZP_08452060.1| putative DNA topoisomerase IV subunit A [Streptomyces sp. Tu6071]
 gi|332743848|gb|EGJ74289.1| putative DNA topoisomerase IV subunit A [Streptomyces sp. Tu6071]
          Length = 822

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 226/764 (29%), Positives = 373/764 (48%), Gaps = 37/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                EE +  + +   ++  YL YA S I  RA+PD RDG KPV RRI++ M+EMGL  
Sbjct: 17  DEADFEERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRP 76

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++   D  A
Sbjct: 77  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPA 136

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+RM   A L+   +DE+ VDF   Y+ ++ EP+  P+ +PNLL NG SGIAVGM
Sbjct: 137 AMRYTESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGM 196

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++  HN+ E+  AA  LI +P   ++ L++Y+ GPD PTGG IV     I ++Y  GR
Sbjct: 197 ATNMAPHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGGRIV-GLAGIRDAYANGR 255

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F+ RA   VE V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +  
Sbjct: 256 GSFKTRASVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVKDLTDR 315

Query: 308 D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +L 
Sbjct: 316 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKEMLEVYLD 374

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSL 423
           HR  V+ RRS FR      R+ +++GLL+A ++IDE+I +IR+ +            FSL
Sbjct: 375 HRFSVVRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEHFSL 434

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q   IL+  LR L + +  +++SE D L AE E++ ++L S  +    ++ E+  V 
Sbjct: 435 SETQTQYILDTPLRRLTRFDRIELESERDRLNAEIEELTAILESDTELRKLVSGELAAVA 494

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS-VDLSA 542
           + +        RRT   E S           +  +P  V++S+ G I        +   +
Sbjct: 495 KKYGTP-----RRTVLLE-SADTPVAAIPLQVADDPCRVLLSSTGVIARTPGTEPLQEGS 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG-------HGEAIQLLID 595
               + D ++ A+ A     +  +++ G+   +   +L             G  +   + 
Sbjct: 549 AKRAKHDVIRSAVPATARGEVGAVTSAGRLLRITVVDLPQLAEGAGPALVGGAPVAEFVR 608

Query: 596 LNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           L  ++ +V     D +   L + +++G    V   +  AN  +    + +   +++    
Sbjct: 609 LEGDETLVCLCTLDESSPGLAIGTAQGVVKRV-VPDYPANREE-LEVITLREGDRIVGAA 666

Query: 655 --KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI----------SDVI 701
             +   + +  + ++ +LL F    +    R   GV      DG             D  
Sbjct: 667 ELRTGEEDLVFITDDAQLLRFQASAVRPQGRPAGGVAGVKLADGAKVLSFDVVDPAVDAA 726

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            F +      +D + ++  +           R   G    +   
Sbjct: 727 VFTVAGSRGTLDDSVQTTAKLTPFDQFPRKGRATGGVRCQRFLK 770


>gi|297191597|ref|ZP_06908995.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719336|gb|EDY63244.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 816

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 222/765 (29%), Positives = 366/765 (47%), Gaps = 35/765 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   TPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDS 125
                + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++   D 
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DED VDF+  Y+ ++ EPV  P+ +PNLL NG SGIAV
Sbjct: 128 PAAMRYTECRMADATSLMTESIDEDTVDFQSNYDGQEREPVALPAAYPNLLVNGASGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     I ++Y  
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIRHPGADLETLMRHVPGPDLPTGGRIV-GLTGIRDAYES 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +
Sbjct: 247 GRGTFKIRATVSVENVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKLQGIADVKDLT 306

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             +    ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +
Sbjct: 307 DRQHGLRLVIEIKNGFIPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           L HR +V+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ D     K  ++  F
Sbjct: 366 LDHRFDVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRSSDNSAQAKERLIEHF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q   IL+  LR L K +  +++SE D L  E +++  +L S  +    ++ E+  
Sbjct: 426 SLSEIQTQYILDTPLRRLTKFDRIELESERDRLNGEIDELTGILESDAELRKLVSSELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V + F        RRT   E +          + +     ++ S     R+     +   
Sbjct: 486 VAKKFGTP-----RRTVLLESAGTPAPAASLQVADDPCRVLLSSTGLLARTATGEPLVDG 540

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--------AIQLL 593
                + D +  A+       +  +++ G+   L   +L                 +   
Sbjct: 541 RSRRSKHDVIVSAVLTTQRGEVGAVTSSGRLLRLSVIDLPQLPDTATTPNLAGGAPVAEF 600

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + L  ++ ++     D +   L + + +G    V   +  AN ++    + +   +++  
Sbjct: 601 LSLEADETLICLTTLDESSPGLALGTLQGVVKRV-VPDYPAN-KEELEVITLREGDRIVG 658

Query: 653 VV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEG 708
                   + +  +  + +LL +   Q+    R   G+      +G  +           
Sbjct: 659 GAELHTGEEDLVFITSDAQLLRYPASQVRPQGRPAGGMTGIKLAEGAEVISFTAVDPAGE 718

Query: 709 LTWIDSAGRSYN--------RSENDLLGWLGKRGGVGSLVPKGFP 745
                 AG            +           R   G    +   
Sbjct: 719 AVVFTVAGSHGTLDDSIATAKLTPFDQYPRKGRATGGVRCQRFLK 763


>gi|307273175|ref|ZP_07554421.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855]
 gi|306510160|gb|EFM79184.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855]
          Length = 823

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 212/754 (28%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ ++++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 484 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753


>gi|332686600|ref|YP_004456374.1| topoisomerase IV subunit A [Melissococcus plutonius ATCC 35311]
 gi|332370609|dbj|BAK21565.1| topoisomerase IV subunit A [Melissococcus plutonius ATCC 35311]
          Length = 813

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 208/753 (27%), Positives = 388/753 (51%), Gaps = 29/753 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+
Sbjct: 4   QSEIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 64  KSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLRETLIEMHGNNGSMDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++++  +L+ ++++ VDF   +++ + EP V P++ PNLL NG++GI+ G AT IP+
Sbjct: 124 ARLSELSGELLKDIEKETVDFVWNFDDTEKEPTVLPARVPNLLINGSTGISAGYATEIPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  + LID+P  S+EKL+ +I GPDFPTGGI+   +E + ++Y  G+G   +R
Sbjct: 184 HNLSEVIDGTIYLIDHPNTSLEKLMTFIPGPDFPTGGILQ-GKEELKKAYETGKGKVVLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E +  G   I+VTEIPY+V K+ L++K+ E+ + K+I  + +IRDES      ++
Sbjct: 243 SKTAIESLRGGRQQIIVTEIPYEVNKAVLVKKMDEIRLNKKIDGMAEIRDESDRTGLRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  +   ++  +F  ++++  +  NM  +     P+ + L  IL  +++HR+ V+ 
Sbjct: 303 IELKKEANAQGILNYLFKNTELQINYNFNMVAIDNM-TPRQVGLVHILNSYISHRKIVIK 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
            RS F ++   +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +A
Sbjct: 362 NRSHFELEKAKKRQHIVSGLIKALSILDKVIATIRESKDKKNAKQNLVKTYAFTEEQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+NL+L  L   +  Q++ E + L    EK+  +L + K+ +  +  E+REVK+ +    
Sbjct: 422 IVNLQLYRLTNTDITQLEKEANELALSIEKLTEILENEKELFAVMKKELREVKKKY---- 477

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                R T  E    +     + ++ +E + V +++ G+I+     S + S         
Sbjct: 478 --THERATKIENEIQEIKIDTEVLVSQEDVIVTVTHEGYIKRSSIRSYNASKPEEIGIKG 535

Query: 551 LKI---ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVT 604
                 A   +T D +LL++        P   L   R           +++L+ ++ I+ 
Sbjct: 536 GDFLLLARQVNTLDHLLLITNKANVIYRPVHELPDLRWKELGEHLSRTILNLSADEAIIG 595

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVT 657
           A++Y     T   + ++  G     + ++         +    +K+   ++++  V    
Sbjct: 596 AYLYKELSATKTFVFMTKAGMIKQTKMTDFAPWRTYKSRATNCMKLKIDDDELVNVYLTD 655

Query: 658 GD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGI-SDVICFKICEGLTWI 712
                 V +V      L F + ++P +  +  GV+  + K+  +  + +     +     
Sbjct: 656 KQNHLDVFLVSHFGFGLRFPLSEVPIIGTKAAGVKSMNLKEEDVIVNGLLIDDTKETEVT 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
               R   +  +     L  R   G +V K   
Sbjct: 716 FITQRGNIKRMSTDELTLLGRAKRGLMVLKELK 748


>gi|323525277|ref|YP_004227430.1| DNA topoisomerase IV subunit A [Burkholderia sp. CCGE1001]
 gi|323382279|gb|ADX54370.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1001]
          Length = 774

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 284/769 (36%), Positives = 426/769 (55%), Gaps = 43/769 (5%)

Query: 1   MGVDNISN---SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  DN  +        E +   ++L    E  YL YA+S +K RA+PD+ DG KPV RRI
Sbjct: 1   MDDDNTLDLFTEPPPPEGDF--LTLGNYAEGAYLQYAVSVVKGRALPDVCDGQKPVQRRI 58

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM+E+GL   A   KSAR+VG+VIGK HPHGDQS YD+LVRLAQ F  RYPLI GQGN
Sbjct: 59  LYAMNELGLSDNAKPVKSARVVGDVIGKYHPHGDQSAYDALVRLAQDFAMRYPLIDGQGN 118

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+ DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+  + EP   P++ P LL 
Sbjct: 119 FGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGVEQEPRQLPARLPFLLL 178

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG SGIAVG+AT IPSHN++E+  A +A+I NP+I+   L++++ GPDFP GG I+ S  
Sbjct: 179 NGASGIAVGLATEIPSHNLREVAAATVAMIRNPKIAHADLMQHMPGPDFPGGGQIISSEA 238

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------ 291
            I  +Y  GRG  +VRARW +E++ RG W +V+TE+P      +++E+I E         
Sbjct: 239 EIAAAYESGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLG 298

Query: 292 ------------AKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
                          + LL+ +RDES     VR+V  PK+  +D    + ++   + +E+
Sbjct: 299 KKALTPEQLQAKQTMLSLLDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLES 358

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
              LN+ ++     P+   L  IL EW+A R   + RR+  R+  +D R+ IL+G +I Y
Sbjct: 359 NASLNLVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLTKVDDRIHILEGRMIVY 418

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
           LNIDE+I IIR  D+PK  +++ F L++ Q D IL +RLR L +LE+ +I+ EL +L  E
Sbjct: 419 LNIDEVIRIIRESDEPKVALMAAFGLSDRQADDILEIRLRQLARLEKIKIEKELADLRDE 478

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           K K++ LL S       +  EI    + +        RRT   +  RA      +A +  
Sbjct: 479 KAKLEELLASESAMKRLLIKEIEADAKQYGDE-----RRTLIQQEKRATY----EARVID 529

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           EP+TVV+S +GW+R+LK H +D +   FK GD L  A    T D ++   ++G+ Y++  
Sbjct: 530 EPVTVVVSQKGWVRALKGHGLDTAGFTFKAGDGLYAAFPCRTPDTLIAWGSNGRVYSVAV 589

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            +L  GRG G  +  LI+L     ++  +   +   LL+ SS G  FI +  ++++  + 
Sbjct: 590 ASLPGGRGDGVPVTSLIELESGSHLMHYYAAAADQALLLASSNGFGFIAKVGDMVSRVKA 649

Query: 638 GKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           GK+F+ + +       + +      VA +    +LL+F ID++  +   G+GV L +  D
Sbjct: 650 GKSFMTIDAGAAPLAPMPMLPDASQVACLSSTGRLLVFGIDEMKTLSGGGRGVTLMAL-D 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSEN-----DLLGWLGKRGGVGS 738
              + V    I      +  A R     E       L   +GKR   G 
Sbjct: 709 DKETLVQALAINGAGVMLIGARRGGRLDEEKLSGAALAAHVGKRARKGR 757


>gi|314938044|ref|ZP_07845354.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a04]
 gi|314941970|ref|ZP_07848831.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133C]
 gi|314951795|ref|ZP_07854834.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133A]
 gi|314991798|ref|ZP_07857256.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133B]
 gi|314995839|ref|ZP_07860926.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a01]
 gi|313589943|gb|EFR68788.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a01]
 gi|313593609|gb|EFR72454.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133B]
 gi|313596074|gb|EFR74919.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133A]
 gi|313599222|gb|EFR78067.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133C]
 gi|313642619|gb|EFS07199.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a04]
          Length = 816

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 395/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR     K    +    F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|284024356|ref|ZP_06378754.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           132]
          Length = 800

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 214/756 (28%), Positives = 396/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDYSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|239928492|ref|ZP_04685445.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291436817|ref|ZP_06576207.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291339712|gb|EFE66668.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
          Length = 817

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 229/765 (29%), Positives = 379/765 (49%), Gaps = 38/765 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL  
Sbjct: 11  PDDSYEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++   D  A
Sbjct: 71  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM +   L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMAEATSLMTESIDEDTVDFAPNYDGQEREPVALPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN++E+  AA  LI  P   ++ L++++ GPD PTGG IV     + ++YR GR
Sbjct: 191 ATNMPPHNLREVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLSGVRDAYRTGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VEEV      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +  
Sbjct: 250 GTFKIRATVTVEEVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDR 309

Query: 308 D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +L 
Sbjct: 310 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           HR +V+ RRS FR      R+ +++GLL A ++IDE+I +IR+ +     K  ++ RFSL
Sbjct: 369 HRFDVVRRRSEFRRGKKRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q   IL+  LR L K +  ++++E D L AE E++  +L+S  +    ++ E+  V 
Sbjct: 429 SDVQTQYILDTPLRRLTKYDRIELETERDRLNAEIEELTRILDSDAELRKLVSGELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-KSHSVDLSA 542
           + F        RRT   E S    A      +E  P  V++S+ G +            A
Sbjct: 489 KKFGN-----DRRTLLLE-SADVPAAPVPLQVEDAPCRVLLSSTGLLARTANDEPFAQDA 542

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--------LLSGRGHGEAIQLLI 594
               + D +  A+       + ++++ G+   L   +               G  +   +
Sbjct: 543 AKRVKHDVIVSAVPTTARGEVGVVTSAGRLLRLNVVDLPVLPEAMPTPNLSGGAPLAEFV 602

Query: 595 DLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            L  ++++V     D +   L + + +G    V       + ++    + +   +++   
Sbjct: 603 SLEDDEEVVCLTTLDESSPGLALGTEQGVVKRVVPD--YPSNKEELEVITLKEGDRIVGA 660

Query: 654 V--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEGL 709
           +  +   + +  V ++ +LL +   Q+    R   GV       G  +            
Sbjct: 661 IELRTGEEDLVFVTDDAQLLRYQAGQVRPQGRPAGGVAGVKLAQGAKVIAFTAVDPAADA 720

Query: 710 TWIDSAG---------RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                AG         ++  +           R   G    +   
Sbjct: 721 MVFTVAGSRGTLDDSVQTTAKLTPFDQFPRKGRATGGVRCQRFLK 765


>gi|257889769|ref|ZP_05669422.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,410]
 gi|257826129|gb|EEV52755.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,410]
          Length = 822

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 395/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR     K    +    F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|228475990|ref|ZP_04060698.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis SK119]
 gi|228269813|gb|EEK11293.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis SK119]
          Length = 799

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 221/756 (29%), Positives = 409/756 (54%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +++ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELVRDINKETVSFVPNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  ID+P IS+ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLDEVIQATLKYIDHPNISVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYETGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   ++VTEIPY+V K+ L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEEALRNGRKQLIVTEIPYEVNKNSLVKRIDELRADKKVDGIIEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M L  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQITYNFNMVAISD-GRPKLMGLREIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+++ +   ++R+ I++GL+ A   +DE+IA+IR+       K  +V  F  TE Q +
Sbjct: 359 ANRTTYDLNHAEKRMHIVEGLMKALSILDEVIALIRHSKNKKDAKDNLVKEFDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E + L    E+  ++L++     N I  E+ E+++ F  S
Sbjct: 419 AIVMLQLYRLTNTDIVALEEEHEELQTLIEEYRNILDNHDALLNVIKKELTEIRKRFKTS 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ ++  E + + ++  G+I+   + S     ++ +  K
Sbjct: 479 ------RLSSIEAEISEIKIDKEVIVPSEEVVLSMTRHGYIKRTSTRSFNASGVTEVGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           EGDSL      +T D  L+ +  G+   +P      +  +  G+ +  ++ L  N+ I+ 
Sbjct: 533 EGDSLLKYQTVNTQDTALVFTNKGRYLFIPIHKIADVRWKELGQHVSQIVSLEENERIID 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +D     ++ +  G      +S        K     K+ +E+++  V+++T + 
Sbjct: 593 VFNEKTFDGKAFYIIATRNGMIKKSNQSLFKTTRFNKPLIATKLKNEDEVVNVLRITQEQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S +++ +   R  GV+  + KD     ++   + +  + I +  R 
Sbjct: 653 MITVITHKGMSLTYSTEELSDTGLRAAGVKSINLKDEDYV-IMTDTVDKNNSIIMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +     +    KR   G  + K   ++  + +++
Sbjct: 712 AIKRIAKDILQDAKRAQRGITLLKELKKNPHRIVAA 747


>gi|15677455|ref|NP_274611.1| DNA topoisomerase IV subunit A [Neisseria meningitidis MC58]
 gi|7226854|gb|AAF41957.1| topoisomerase IV subunit A [Neisseria meningitidis MC58]
 gi|316983853|gb|EFV62833.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis H44/76]
 gi|325140750|gb|EGC63264.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis CU385]
 gi|325199801|gb|ADY95256.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis H44/76]
          Length = 767

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 264/769 (34%), Positives = 407/769 (52%), Gaps = 47/769 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQAHAPHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP HN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPPHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQ 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL
Sbjct: 421 VIRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +   ++   I  E++   + +  +     RRT   E  RA            EPIT+++S
Sbjct: 481 SDENEKRKLIVKEMQADMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   
Sbjct: 592 DGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSSGYGFITKLGDMVGRVKAGKVVMTAD 651

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   V V           +       + L F I ++  M++GKG+++     G   
Sbjct: 652 SGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGE-- 709

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWL------GKRGGVGSLVP 741
            +    +   L  +  +     R        +       KRG  G L+P
Sbjct: 710 SMTHTAVSSELEILIESE---GRRGAAHKDRIPISLLEAKRGKKGRLLP 755


>gi|294622316|ref|ZP_06701359.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317]
 gi|314948777|ref|ZP_07852149.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082]
 gi|291598208|gb|EFF29306.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317]
 gi|313644843|gb|EFS09423.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082]
          Length = 816

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 396/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD+S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR     K    +    F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|317968471|ref|ZP_07969861.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CB0205]
          Length = 830

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 225/777 (28%), Positives = 373/777 (48%), Gaps = 44/777 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   E  ++ + L   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL  
Sbjct: 11  PDPSDERRIQPIELHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R PL+ G GNFG++D D  AA
Sbjct: 71  DRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRNPLLDGHGNFGSVDDDPPAA 130

Query: 129 YRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            RYTE R+  +A E +L  +  D VDF + ++    EP V P++ P LL NG +GIAVGM
Sbjct: 131 MRYTETRLAPIANEAMLDEIGSDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ +A +AL+  PE+S EKLLE + GPDFPTGG ++     + ++Y  GR
Sbjct: 191 ATNIPPHNLGEVVDALIALVRKPELSDEKLLELVPGPDFPTGGEVLTG-SGLRDTYLYGR 249

Query: 248 GGFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           G   +R    +EE+  G        +V+TE+PYQ+ K+  IEK+AE +   +I  + DIR
Sbjct: 250 GSIPMRGVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKINGIADIR 309

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V+    R  +P+ ++  +   + +++ +   +  L     P  + L  +L+
Sbjct: 310 DESDRDGMRVVVELRRDANPEKVLADLQRRTALQSNYGAILLALVH-GKPIQLSLRQLLQ 368

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
           E+L +R   + RR+   ++  + R+E+++GL+ A   +  +I +I         K  +  
Sbjct: 369 EFLDYRELTIIRRTKHALKRAEDRLEVVEGLITALNALQRVIEMITAAPDASSAKARLQV 428

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + E Q DA+L + LR L  LE+  ++ E D+L  E+ ++  LL+      + +  E 
Sbjct: 429 HLDINERQADAVLAMPLRRLTGLEQESLRKEADDLRQERARLRHLLDERPALLDTMVAEF 488

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-------------KEPITVVISN 526
           + +K+ F+       RRT   E      A    A                     +VI  
Sbjct: 489 KALKKRFATP-----RRTRLVEGGDELVAQRTAAQRPNTELLRQRAFEGLPSDGRLVIQA 543

Query: 527 RGWIRSLKSHSVDLSALHFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
            G ++ +    +    L             ++ L   +   +L  +  G+   L      
Sbjct: 544 DGQVKVIGPQLLGRLHLDEPAPLGDNPSPARLILPISSRPALLAFTDAGRVALLRW--EF 601

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +G+  G   + L +    + +V             + ++SS G    +  +E    + + 
Sbjct: 602 AGQNPGTLEKFLPEGMSGERVVQLLPLPQEAEGKSVGLLSSDGRFKRLPLAEFQDLSGRA 661

Query: 639 KTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKD 694
            + LK+     +K VV    GD + V     +LL   +++  +P M R  +G  L     
Sbjct: 662 TSILKLKEGVSLKRVVLCQDGDDLMVGSSTGRLLRLEVNEENLPVMGRNAQGPVLLRLLP 721

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           G           +G  W+ +  +   +  +        RG +G +  +   R  + +
Sbjct: 722 GEEVIGAAAVNTDGAVWV-ATRQGSIKQLDASDIRQCHRGDIGQICIRFGQRDDQVV 777


>gi|312869137|ref|ZP_07729311.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3]
 gi|311095383|gb|EFQ53653.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3]
          Length = 825

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 225/746 (30%), Positives = 387/746 (51%), Gaps = 29/746 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ +SL   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +   
Sbjct: 1   MRDAKIETMSLERLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PL+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLVEMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A + LI +P+ S+EKL+E+I GPDFPTGG IV+  + I ++Y+ GRG   
Sbjct: 181 PTHNLGEVLDALIYLIKHPDASLEKLMEFIPGPDFPTGG-IVQGADGIKKAYQTGRGRIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E +  G   I VTEIPY+V K++L+++I +L +AK++  + + RDE+      
Sbjct: 240 VRAKTEIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIVEARDETDRSGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R+ + + ++  +   +D++  +  NM  +   R P  + L  IL  +LA ++EV
Sbjct: 300 IAIELKRNANANGILNYLLKNTDLQINYNFNMVAIDDQR-PMRVGLKHILTSYLAFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RR+S+ +    RR+ I++GL+ A   +D++I  IR     K    +   +++ T+ Q 
Sbjct: 359 VRRRTSYNLDKAQRRLHIVEGLIKALSILDQVIKTIRASKNRKDAKQNLIDQYAFTDVQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +  +++ E  +L    ++   +L+  ++    +  E++ VK+ F  
Sbjct: 419 EAIVTLQLYRLTNTDVTELEDEQQHLTDLIDEYQLILSDDEELSKVVRREMQAVKKEFGN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHF 545
                  R T  E          +  +  E + V++S+ G+I+     S     L     
Sbjct: 479 P------RRTQIENQVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSFKASSLDEDGL 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIV 603
           +E D   +    +T   + + +  G     P      +  +  GE I   I L  +++I+
Sbjct: 533 REDDYPLLITQTNTLAHLFMFTNRGHVIYRPVHELADVRWKDTGEHISQTIGLAEDEEII 592

Query: 604 TAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVT-- 657
            A V+D        +  +S G        +    +R K    + V  + K   VV V   
Sbjct: 593 KAMVFDKLDLPGSFIFGTSDGQVKQSAYKDYQPGSRYKSHASMAVKLKSKDATVVSVDYY 652

Query: 658 --GDH---VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTW 711
              D    +  +      + F +  +P    R  GVR  + KD   + V    + +G   
Sbjct: 653 EPTDENRSLLAISREGYAVRFDVADVPVTGLRTAGVRAINLKDDD-ALVDLVLVKDGQRV 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVG 737
                R   +        +G R   G
Sbjct: 712 ASITQRGAFKEMPIDEIAVGARARRG 737


>gi|225870669|ref|YP_002746616.1| topoisomerase IV subunit A [Streptococcus equi subsp. equi 4047]
 gi|225700073|emb|CAW94138.1| topoisomerase IV subunit A [Streptococcus equi subsp. equi 4047]
          Length = 822

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 204/745 (27%), Positives = 365/745 (48%), Gaps = 22/745 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 125 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E + GPDFPTGG I++    I ++Y  G+    VR+
Sbjct: 185 NLSEVIDAVIYMIDHPNAKLDKLMELLPGPDFPTGG-IIQGAAEIKKAYETGKSRVVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   I+VTE+PY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 244 RTEIEDLKGGKQQIIVTELPYEVNKAVLVKKIDDVRVNNKVPDIAEVRDESDRTGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   ++++  +  NM  +     P+ + L  IL  ++AHR+ ++ +
Sbjct: 304 ELKKDADSQTILNYLLKYTELQVNYNFNMVAIDHF-TPRQVGLQKILSSYIAHRKSIIIK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI
Sbjct: 363 RSQFDKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST- 490
           + L+L  L   +   ++ E  +L      + +++      +N +  E+REVK+ F+    
Sbjct: 423 VTLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGDEATMYNVMKRELREVKKKFAGPRL 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
              +  +   E+  A     ++  +       +            H+  L  +  ++ D 
Sbjct: 483 SELQAESQAIEIDSASLILEEETFVSVTQGGYI----KRTSPRSFHASSLEEIGKRDDDH 538

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD- 609
           L     A TTD +LL +  G     P   L   R       L   + +          + 
Sbjct: 539 LIFVKQAKTTDHLLLFTNLGNVIYRPVYELTDLRWKDIGEHLSQAIANFAADELVIYAEL 598

Query: 610 ----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGDHV 661
                    + V+  G     E  E+        K   + K+   ++++  +  +  + +
Sbjct: 599 IQSFEEGLYISVTQHGLIKRFERKELTPWRTYKSKSIKYAKLKDIDDRIVAIAPIIMEDL 658

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V +    L FS  +IP    +  GV+  + K        C    +    +    R   
Sbjct: 659 LLVTQQGYALRFSSQEIPIQGLKAAGVKGINLKAQDYLVSACPVNADSFFVL--TQRGAL 716

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFP 745
           +           R   G  V +   
Sbjct: 717 KRVAIADIPQTSRANRGLPVLRELK 741


>gi|307154402|ref|YP_003889786.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7822]
 gi|306984630|gb|ADN16511.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7822]
          Length = 870

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 236/814 (28%), Positives = 379/814 (46%), Gaps = 74/814 (9%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L    +   +L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   DLLATGQIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRMVQDFSTRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +A   IL  + E  VDF   ++    EPVV P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPIAHEAILGNISEAIVDFTSNFDNSQQEPVVLPAQLPLLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID+P++   +L E I GPDFPTGG I+   E I+E+YR  +G
Sbjct: 186 TNIPPHNLGEIVDGLIALIDHPQLEDRQLWEIIPGPDFPTGGEII-DTEGIIEAYRTSKG 244

Query: 249 GFRVRARWCVEEVG------RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              +R    +E +       +    IVVTE+PYQV KS  IEK+AEL+   R+  + DIR
Sbjct: 245 IIPIRGVTHLETISLEGRRPKERTAIVVTELPYQVNKSAWIEKVAELVNQGRLEGIADIR 304

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R  D   ++++++  + ++T F   +  L     P  + L  +L+
Sbjct: 305 DESDRLGMRVVIELKRETDSQKILDNLYRQTALQTNFGTILLALV-ENKPCQLSLRQLLE 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-- 420
           E+L  R + L R+ S  +     R+ +L GLLIA  N+D +I I+RN             
Sbjct: 364 EFLKFREQTLIRQYSHELAQAQHRLHLLSGLLIALRNLDRVIDILRNSPDGTTAKQRFSE 423

Query: 421 -FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F+L+E Q D+IL++ +R L  LE+ ++ +E   L     ++ +LLN   +    +  E+
Sbjct: 424 AFNLSEEQSDSILSMPMRRLTGLEQQKLDTEYQELEQRINQLQTLLNDRNELMKSLKKEL 483

Query: 480 REVKEIFSKSTDLGRRRTTFC--------------------------------------- 500
           R +K  F+       R                                            
Sbjct: 484 RSLKRKFANPRRTRIRSCLSTPSSSSPEILDSLPPGKKRVVLPTVTDEPIKTENAAKKAS 543

Query: 501 -----------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS-HSVDLSALHFKEG 548
                      +  +    TL           + I+ +G+I    S  + D  A   +E 
Sbjct: 544 DSPKNATPKAQQSGQNSSFTLFTPQTPPADALLTITYQGYIYWQSSVQATDSIASLKQEE 603

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL---NHNQDIVTA 605
           D           + +++++  GKAY +   ++        ++  L+        + +V  
Sbjct: 604 DFPIYRQAIAQKELLIVITNQGKAYPISVVDIPPKDSQACSLLSLLPNAAQKKAEKVVGY 663

Query: 606 FVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHV 661
           F         +L+++S +G    +  SE+     +G   +K    +++  V   +  + +
Sbjct: 664 FFLPEEKNTHELILLSQQGRIKRLPLSELNQLGNRGLALIKFKDADELSYVCLSSVDEEI 723

Query: 662 AVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           A+     ++L F I    +  M R  +G +    + G      C         +      
Sbjct: 724 AIATTGGRILRFKISDELLSLMGRNAQGNQALRLRYGEHL-AGCVTTKAQDYLVLITQLG 782

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +        + K G +G+   +   ++     
Sbjct: 783 YAKRLPVNSLRITKLGEIGTTALQFSTKTDNLAG 816


>gi|294617488|ref|ZP_06697119.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1679]
 gi|291596228|gb|EFF27490.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1679]
          Length = 816

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 212/754 (28%), Positives = 393/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y ++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYKAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+I  IR     K    +    F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|319401356|gb|EFV89567.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis FRI909]
          Length = 800

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 221/748 (29%), Positives = 401/748 (53%), Gaps = 23/748 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  L  ID P+I+I +L++YI GPDFPTGGII    E I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQG-IEGIKKAYETGKGRVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   ++  SD++  +     V      P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDANSESIKNYLYKNSDLQISYNF-NMVAISEGRPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ +  TE Q +
Sbjct: 359 TNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELIEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ M+  E + + ++  G+I+   + S     ++ +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P      +  +  G+ I  ++ ++ ++++V 
Sbjct: 533 DGDRLLKHEAVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    +      ++ +  G       S+       K    +KV   +K+  VV++  D 
Sbjct: 593 VYNEKDFKHEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDNDKLINVVRLETDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S +++ +   R  GV+  + KD     V+   + +  + I    R 
Sbjct: 653 LITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYV-VMTEDVNDSDSIIMVTQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  +  +    KR   G  + K   +
Sbjct: 712 AMKRIDFNVLQEAKRAQRGITLLKELKK 739


>gi|257876711|ref|ZP_05656364.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20]
 gi|257810877|gb|EEV39697.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20]
          Length = 820

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 218/755 (28%), Positives = 394/755 (52%), Gaps = 29/755 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+
Sbjct: 4   KSNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKGFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 64  KSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++++  +L+ ++++ V+    +++ + EP V P+K+PNLL NG++GI+ G AT IP+
Sbjct: 124 ARLSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +  + LID+P+ S+++L++YI GPDFPTGGI+   +E I ++Y  G+G   +R
Sbjct: 184 HNLGEIIDGTIYLIDHPQASLDQLMKYIPGPDFPTGGILQ-GKEEIKKAYETGKGKVILR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   IV+ EIPY+V K+ L++K+ E+ + KRI  + ++RDE+      ++
Sbjct: 243 SKTKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  +   ++  +F  ++++  +  NM  +   R PQ + L  IL+ ++ HRREV+ 
Sbjct: 303 VELKKEANAQGILNYLFKNTELQINYNFNMVAIDNMR-PQQVGLKRILESYIKHRREVIE 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           +RS F +Q   +R  I+ GL+ A   +DE+IA IR     K    +   +   TE Q +A
Sbjct: 362 KRSRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQHGFTEEQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+NL+L  L   +  Q+++E   L     ++ ++LN   +    I  E+RE+K+ ++   
Sbjct: 422 IVNLQLYRLTNTDITQLQAEAKELAETIAELTTILNEENELLKVIKKELREIKKKYTTP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKE 547
                R T  E    +     Q ++ +E + V ++  G+++     S        +  KE
Sbjct: 481 -----RLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYVKRSSLRSYGASKPEEIGMKE 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVT 604
           GDSL  +   +T D +LL++  G     P   L   +           ++ L  ++ I+ 
Sbjct: 536 GDSLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPDLKWKDLGEHISQTVMTLAQDEMIIG 595

Query: 605 AFVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVT 657
            F Y   D     +++S  G       +E         +  T +K+  E +++  V    
Sbjct: 596 VFAYKEIDPLKNFVLISKNGMIKQTRMTEFEPWRTYKTRPMTIMKLKDESDELVNVFLTD 655

Query: 658 GD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WI 712
                 V +V      L + ++++P +  +  GV+  + K             EG T  +
Sbjct: 656 QTEEMDVFLVSHLAFGLRYPLNEVPVVGPKAAGVKAMNLKADDYLINGLLVYSEGDTPIV 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               R   +           R   G +V +   ++
Sbjct: 716 LITQRGAAKRMLAQEINQLGRAKRGLMVLRELKKN 750


>gi|83855001|ref|ZP_00948531.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83842844|gb|EAP82011.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 696

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 349/698 (50%), Positives = 480/698 (68%), Gaps = 33/698 (4%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE 
Sbjct: 1   MGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAEA 60

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L+G++E+AVDFR+ Y+   +EP V P++FPNLLANG+SGIAVGMAT+IP HN+ E+ +A
Sbjct: 61  MLEGLNENAVDFRENYDGTLTEPAVLPAQFPNLLANGSSGIAVGMATNIPPHNISELVDA 120

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            + LI  P+   + LL+Y+ GPDFPTGGIIVE  E+I  +YR G+GGFR+R RW  E++G
Sbjct: 121 CIHLIKTPDARDDTLLKYVPGPDFPTGGIIVEPPENIANAYRTGKGGFRLRCRWETEDLG 180

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
           RG+W IV+TEIPYQVQKS+LIEKIAELI  K+IP+L D+RDESA+D+R+++ P+++++DP
Sbjct: 181 RGAWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILGDVRDESADDIRLIIEPRSKNVDP 240

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+ +L HRREVL RRS+ RM+ 
Sbjct: 241 EVLMGMLYRSSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRREVLQRRSTHRMEK 300

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-----------------------KPVMVS 419
           ID R+E+L+G ++A+LN+D +I IIR ++ P                        P   +
Sbjct: 301 IDHRLEVLEGFIVAFLNLDRVIDIIRYDEDPKSALMAEDWGKDHVRAMDEASYVPPAPST 360

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
             +L+E Q DAILN+RLRSLR+LEE ++  E   L+ E+  ++ LL +   QW+ I  ++
Sbjct: 361 ENALSEVQADAILNMRLRSLRRLEEIELLREQSALMEERSGLEDLLENEGTQWDTIIDQL 420

Query: 480 REVKEIFSKS-----TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           RE K+ F K       ++GRRRT+F E +   +    +AMI++EPITVV S  GWIR++ 
Sbjct: 421 RETKKQFGKDWSLDGKNIGRRRTSFSE-AGVIEEVPLEAMIDREPITVVCSQMGWIRAMT 479

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H      L FK+GD  +   HA TTDR+L+  ++G+ YT+ A  L  GRG GE ++L++
Sbjct: 480 GHIDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASTLPGGRGMGEPLRLMV 539

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           DL +   IV   ++ +  KLLV SS G+ FIV E +++A TR GK  L V  + K  +  
Sbjct: 540 DLPNEVQIVDILIHKAGRKLLVASSAGDGFIVPEDDVLAQTRSGKQVLNVRGDAKAMICA 599

Query: 655 KVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
            VTG  D VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD I F    GL+W 
Sbjct: 600 PVTGDADAVAVVGENRKVLVFGLDELPEMGRGKGVRLQKYKDGGMSDAITFSRENGLSWQ 659

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           D AGR   R+E+DL  W GKR   G + P+GFPR  +F
Sbjct: 660 DPAGR--TRTESDLTEWTGKRATAGRMAPRGFPRDNRF 695


>gi|257878032|ref|ZP_05657685.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,230,933]
 gi|257892294|ref|ZP_05671947.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,408]
 gi|260559082|ref|ZP_05831268.1| DNA topoisomerase IV subunit A [Enterococcus faecium C68]
 gi|257812260|gb|EEV41018.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,230,933]
 gi|257828673|gb|EEV55280.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,408]
 gi|260074839|gb|EEW63155.1| DNA topoisomerase IV subunit A [Enterococcus faecium C68]
          Length = 817

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 395/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR     K    +    F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 598 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 657

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 658 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 718 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 751


>gi|325570904|ref|ZP_08146553.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156308|gb|EGC68491.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus
           casseliflavus ATCC 12755]
          Length = 820

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 220/754 (29%), Positives = 394/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   SNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L+ ++++ V+    +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P+ S+++L++YI GPDFPTGGI+   +E I ++Y  G+G   +R+
Sbjct: 185 NLGEIIDGTVYLIDHPQASLDQLMKYIPGPDFPTGGILQ-GKEEIKKAYETGKGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+ EIPY+V K+ L++K+ E+ + KRI  + ++RDE+      ++ 
Sbjct: 244 KTKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +   R PQ + L  IL+ ++ HRREV+ +
Sbjct: 304 ELKKEANAQGILNYLFKNTELQINYNFNMVAIDNMR-PQQVGLKRILESYIKHRREVIEK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +Q   +R  I+ GL+ A   +DE+IA IR     K    +   +   TE Q +AI
Sbjct: 363 RSRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQHGFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +NL+L  L   +  Q+++E   L     ++ ++LN   +    I  E+RE+K+ +S    
Sbjct: 423 VNLQLYRLTNTDITQLQAEAKELAETIAELTTILNEESELLKVIKKELREIKKKYSTP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S        +  KEG
Sbjct: 481 ----RLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYVKRSSLRSYGASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           DSL  +   +T D +LL++  G     P   L   +           ++ L  ++ I+  
Sbjct: 537 DSLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPDLKWKDLGEHISQTVMTLAQDEMIIGV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           F Y   D     +++S  G       +E         +  T +K+  E +++  V     
Sbjct: 597 FAYKEIDPLKNFVLISKNGMIKQTRMTEFEPWRTYKTRPMTIMKLKDESDELVNVFLTDQ 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L +S++++P +  +  GV+  + K             EG T  + 
Sbjct: 657 TEEMDVFLVSHLAFGLRYSLNEVPVVGPKAAGVKAMNLKADDYLINGLLVYSEGDTPIVL 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 ITQRGAAKRMLAQEITQLGRAKRGLMVLRELKKN 750


>gi|293382944|ref|ZP_06628862.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712]
 gi|293389567|ref|ZP_06634024.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613]
 gi|312907585|ref|ZP_07766576.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512]
 gi|312910203|ref|ZP_07769050.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516]
 gi|291079609|gb|EFE16973.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712]
 gi|291081184|gb|EFE18147.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613]
 gi|310626613|gb|EFQ09896.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512]
 gi|311289476|gb|EFQ68032.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516]
          Length = 823

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 214/754 (28%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 484 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753


>gi|73662712|ref|YP_301493.1| DNA topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495227|dbj|BAE18548.1| topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 800

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 214/756 (28%), Positives = 402/756 (53%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +   + LI  QGN G+ID D AAA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQGWKLCHVLIEMQGNNGSIDNDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++++++E +L+ ++++ V F   Y++   EP+V P++ PNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSRISEELLRDINKETVPFMPNYDDTTLEPMVLPARLPNLLINGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++Y+ GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLGEVIQATLKFIDNPDITVAQLMKYVKGPDFPTGGIIQG-IDGIKKAYETGKGKIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   EE+  G   ++VTE+PY+V KS L++K+ EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEDEELRNGRKQLIVTEVPYEVNKSSLVKKMDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + ++  ++  +D++  +     V      P +M +   +  +L H+ +V+
Sbjct: 300 AIELKKDVNSEAVLNYLYKNTDLQVAYNF-NMVAISEGRPVLMGIRQFIDSYLNHQIDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            +R+ + +   + R+ I++GL+ A   +DE+I +IR        K  +V+ F  TE Q +
Sbjct: 359 TKRTRYELDHAESRMHIVEGLMKALSILDEVIKLIRASKNKKDAKDNLVAEFDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  Q++ E D L +   ++ ++L+      N I  E+ E++  F + 
Sbjct: 419 AIVTLQLYRLTNTDIVQLQEEHDELKSLIGRLKNILDDHSALLNVIKEELTEIRNRFKQG 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ MI  E + + ++  G+I+     S     ++ +  K
Sbjct: 479 ------RLSSIEAEISEIKIDKEVMIPSETVIMSVTKHGYIKRTSLRSYNASGVNEIGVK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD L      +T D  L+ +  G+   +P      +  +  G+ +  ++ L+  + I+ 
Sbjct: 533 DGDVLMKHQEVNTLDTALVFTNKGRYLFIPVHKLAEIKWKELGQHVSQIVPLDEGEFIID 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
           A+    +      ++ +  G       S    +   K    +KV  ++++  V+++    
Sbjct: 593 AYCESDFKPDAFYILATRHGMIKRSNVSMFKTSRFNKPLVAMKVKDDDEIINVMRIDSTQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S D++ +   R  GV+  + KD   + V+   I    + + +  R 
Sbjct: 653 LITVITNKGMSLTYSSDELSDTGLRAAGVKSINLKDEDFA-VLTQVISANNSILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +     +    KR   G  + K   +S  + +++
Sbjct: 712 SLKRIGFKVLQTAKRAQRGITLLKELKKSPHRIVAA 747


>gi|225868404|ref|YP_002744352.1| topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701680|emb|CAW99003.1| topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus]
          Length = 822

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 208/745 (27%), Positives = 377/745 (50%), Gaps = 22/745 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 125 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   ++KL+E + GPDFPTGG I++    I ++Y  G+G   VR+
Sbjct: 185 NLSEVIDAVIYMIDHPNAKLDKLMELLPGPDFPTGG-IIQGAAEIKKAYETGKGRVVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   I+VTE+PY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 244 RTEIEDLKGGRQQIIVTELPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   ++++  +  NM  +     P+ + L  IL  ++AHR+ ++ +
Sbjct: 304 ELKKDADSQTILNYLLKYTELQVNYNFNMVAIDHF-TPRQVGLQKILSSYIAHRKSIIIK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI
Sbjct: 363 RSQFDKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST- 490
           + L+L  L   +   ++ E  +L      + +++ +    +N +  E+REVK+ F+    
Sbjct: 423 VTLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGNEATMYNVMKRELREVKKKFAGPRL 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
              +  +   E+  A     ++  +       +            H+  L  +  ++ D 
Sbjct: 483 SELQAESQAIEIDSASLILEEETFVSVTQGGYI----KRTSPRSFHASSLEEIGKRDDDH 538

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---LIDLNHNQDIVTAFV 607
           L     A TTD +LL +  G     P   L   R       L   + +   ++ ++ A +
Sbjct: 539 LIFVKQAKTTDHLLLFTNLGNVIYRPVYELTDLRWKDIGEHLSQAITNFAADEMVIYAEL 598

Query: 608 YDSTCKLLVV--SSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDHV 661
             S  + L    +  G     E  E++   +   K   + K+  +++++  +  +  + +
Sbjct: 599 IQSFEQGLYASVTQHGLIKRFERKEMMPWRSYKSKSIKYAKLKAADDRIIAIAPIVMEDL 658

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V +    L FS  +IP    +  GV+  + K        C    +    +    R   
Sbjct: 659 LLVTQQGYALRFSSQEIPIQGLKAAGVKGINLKAQDYLVSACPVNADSFFVL--TQRGAL 716

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFP 745
           +           R   G LV +   
Sbjct: 717 KRVAIADIPQTSRANRGLLVLRELK 741


>gi|257881182|ref|ZP_05660835.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502]
 gi|257816840|gb|EEV44168.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502]
          Length = 817

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 396/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD+S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR     K    +    F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTG 658
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 598 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 657

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 658 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 718 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 751


>gi|223043266|ref|ZP_03613313.1| DNA topoisomerase IV, A subunit [Staphylococcus capitis SK14]
 gi|222443477|gb|EEE49575.1| DNA topoisomerase IV, A subunit [Staphylococcus capitis SK14]
          Length = 800

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 222/756 (29%), Positives = 410/756 (54%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  F   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFEKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVAFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L+++I GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKHIKGPDFPTGGIIQG-IDGIKKAYETGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   EE+  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEELRSGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + +   ++R+ I++GL+ A   +DE+I +IRN       K  +V+ F  TE Q +
Sbjct: 359 TNRTRYDLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAEFDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +K+ ++L+      + I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEEEHAELEALIKKLRNILDDHDALLSVIKDELNEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ M+  E + + +S+ G+I+   + S     ++ +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVILSVSHHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P      +  +  G+ +  ++ ++ ++ +V 
Sbjct: 533 DGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVVD 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    ++S    ++ +  G       S+       K    +KV   +++  V+++  D 
Sbjct: 593 VYNEKDFNSDAFYVMATKNGMIKKSSVSQFKTTRFNKPLVGMKVKDHDEIVNVIRLESDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S  ++ +   R  GV+  + KD     V+   + +  + +    R 
Sbjct: 653 LITVLTHKGMSLTYSTSELSDTGLRAAGVKSINLKDEDYV-VMTESVSDSDSILMITQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + + +
Sbjct: 712 AIKRISYKVLQVAKRAQRGITLLKELKKNPHRIVDA 747


>gi|318062526|ref|ZP_07981247.1| DNA topoisomerase IV subunit A [Streptomyces sp. SA3_actG]
 gi|318078753|ref|ZP_07986085.1| DNA topoisomerase IV subunit A [Streptomyces sp. SA3_actF]
          Length = 822

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 224/764 (29%), Positives = 373/764 (48%), Gaps = 37/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                EE +  + +   ++  YL YA S I  RA+PD RDG KPV RRI++ M+EMGL  
Sbjct: 17  DEADFEERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRP 76

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++   D  A
Sbjct: 77  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPA 136

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+RM   A L+   +DE+ VDF   Y+ ++ EP+  P+ +PNLL NG SGIAVGM
Sbjct: 137 AMRYTESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGM 196

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++  HN+ E+  AA  LI +P   ++ L++Y+ GPD PTGG IV     I ++Y  GR
Sbjct: 197 ATNMAPHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGGRIV-GLAGIRDAYANGR 255

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F+ RA   VE V      +VVTE+P+ V   +++ KI +L+ +K++  + D++D +  
Sbjct: 256 GSFKTRASVTVENVTARRKGLVVTELPFTVGPEKVVAKIKDLVGSKKLQGIADVKDLTDR 315

Query: 308 D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +L 
Sbjct: 316 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKEMLEVYLD 374

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSL 423
           HR  V+ RRS FR      R+ +++GLL+A ++IDE+I +IR+ +            FSL
Sbjct: 375 HRFSVVRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEHFSL 434

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q   IL+  LR L + +  +++SE D L AE E++ ++L S  +    ++ E+  V 
Sbjct: 435 SETQTQYILDTPLRRLTRFDRIELESERDRLNAEIEELTAILESDTELRKLVSGELAAVA 494

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS-VDLSA 542
           + +        RRT   E S           +  +P  V++S+ G I        +   +
Sbjct: 495 KKYGTP-----RRTVLLE-SADTPVAAIPLQVADDPCRVLLSSTGVIARTPGTEPLQEGS 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG-------HGEAIQLLID 595
               + D ++ A+ A     +  +++ G+   +   +L             G  +   + 
Sbjct: 549 AKRAKHDVIRSAVPATARGEVGAVTSAGRLLRITVVDLPQLAEGAGPALVGGAPVAEFVR 608

Query: 596 LNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           L  ++ +V     D +   L + +++G    V   +  AN  +    + +   +++    
Sbjct: 609 LEGDETLVCLCTLDESSPGLAIGTAQGVVKRV-VPDYPANREE-LEVITLREGDRIVGAA 666

Query: 655 --KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI----------SDVI 701
             +   + +  + ++ +LL F    +    R   GV      DG             D  
Sbjct: 667 ELRTGEEDLVFITDDAQLLRFQASAVRPQGRPAGGVAGVKLADGAKVLSFDVVDPAVDAA 726

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            F +      +D + ++  +           R   G    +   
Sbjct: 727 VFTVAGSRGTLDDSVQTTAKLTPFDQFPRKGRATGGVRCQRFLK 770


>gi|332294867|ref|YP_004436790.1| DNA gyrase, A subunit [Thermodesulfobium narugense DSM 14796]
 gi|332177970|gb|AEE13659.1| DNA gyrase, A subunit [Thermodesulfobium narugense DSM 14796]
          Length = 804

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 237/741 (31%), Positives = 390/741 (52%), Gaps = 34/741 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   +++ YL YA+S I  RAIPD+RDG KPV RRII+AMSEMG+ +    KK AR+VGE
Sbjct: 8   VEEEVKDSYLDYAMSVIIGRAIPDIRDGLKPVQRRIIYAMSEMGMTYDKPHKKCARVVGE 67

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+GK HPHGD +VYD+LVR+AQ F  RYPLI G GNFG++DGD+AAA RYTEAR+ +++ 
Sbjct: 68  VLGKFHPHGDTAVYDALVRMAQDFTYRYPLIDGHGNFGSLDGDNAAAMRYTEARLAKISN 127

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            ++  +  + V  +D ++    EP V P+KFP LLANG SGIAVGMATSIP HN+ E+ +
Sbjct: 128 TLISEMGFNIVPMQDNFDGSLKEPEVLPAKFPQLLANGASGIAVGMATSIPPHNLGELID 187

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A L ++ NP++S E+LL+ + GPDFPTGGIIV  +  I E +  G+G   +R R  + E+
Sbjct: 188 ALLLILKNPQVSEEELLKVLTGPDFPTGGIIV-GKNGIKEYFLTGKGKIILRGRHKI-EM 245

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           G  +  +V++EIPY V K+ L+EKI +LI  KR+  + +IRDES  +   ++    +  +
Sbjct: 246 GSKTNKLVISEIPYSVNKAILVEKIDQLIKEKRLDGVSEIRDESGREGIRIVLDLKKGAN 305

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            + +++ ++  + M+  F + M  L    VP+V+P+  +L  +L  R+++  +R    ++
Sbjct: 306 SEKIVKKLYKHTTMQITFGVIMLSLV-AGVPKVLPVKDVLLHFLTFRKDIQRKRLEKILE 364

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNLRLRS 438
            + +R+ +L  L  A   ID++I II+    P      +     ++E     IL+LRL+ 
Sbjct: 365 DLKKRLVLLDALSKALEKIDQVIEIIKRSLNPAEAKKRLCEFLQISEEGAQGILDLRLQR 424

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE  +I  +L+  L E ++ +  LN   +    +  E+ E+K  F+      +RRT 
Sbjct: 425 LTSLEREKILKDLEKTLLEIKETEFALNDEGKFLEILENELVEIKSNFAD-----KRRTE 479

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK----------SHSVDLSALHFKEG 548
                  ++  + +  I +  + V IS  G+I+ +K             +D         
Sbjct: 480 I--SLDFEEEDILEEDIPEGEVIVTISKLGFIKRMKKDVFERQNKGGKGIDGIQKSSAIQ 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAF 606
           D ++ ++     DRIL +S+ G+AYTL A ++           I  ++ L+ ++ I    
Sbjct: 538 DRIQTSIVLSNKDRILFISSKGRAYTLLAFSIPEFSRTSRGTGIANILPLSEDEKITFMV 597

Query: 607 VYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
                     +++ +S G    ++   I++  R G   +K++  E +     V  +   +
Sbjct: 598 QIKEEEIKKDIILATSMGYLKKIKLENIVSKRRNGVIAIKLNDSESVVGACMVCEEKFLL 657

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNR 721
              N    + ++  +  M     GV      KD  +  ++     +   +I        +
Sbjct: 658 YSSNGFATLANLKDLRNMGNNSHGVIGMRLSKDDKLLGIV----PDSKYFIVIDKNGNGK 713

Query: 722 SENDLLGWLGKRGGVGSLVPK 742
             +       KRG  G  V K
Sbjct: 714 KVSSDNFTSHKRGTKGVRVSK 734



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 5/155 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               +   LL +     TL     L   G+     + + L+ +  ++       +   +V
Sbjct: 648 CMVCEEKFLLYSSNGFATLANLKDLRNMGNNSHGVIGMRLSKDDKLLGIVP--DSKYFIV 705

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           +   GN   V      ++ R  K   +VS  +   ++    G  + +  E  K++   ID
Sbjct: 706 IDKNGNGKKVSSDNFTSHKRGTKGV-RVSKNKLATILNYKEGMDLIIYTEKGKVIRIDID 764

Query: 677 QIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGL 709
            + ++SR  KG++LQ   K   + D    +    L
Sbjct: 765 SVKQLSRNAKGIKLQKLDKADSVLDATIVRPNTDL 799


>gi|326692693|ref|ZP_08229698.1| DNA topoisomerase IV subunit A [Leuconostoc argentinum KCTC 3773]
          Length = 812

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 202/752 (26%), Positives = 357/752 (47%), Gaps = 28/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM + G  +   +
Sbjct: 1   MADRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++D D AAA RYT
Sbjct: 61  RKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A  ++  + ++ VD    +++   EP V PS+ P+L  NG +GI+ G AT IP
Sbjct: 121 EARLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EI  A + L+D+PE  +  L+ YI GPDFPTGG I++  + I ++Y+ GRG   V
Sbjct: 181 PHNLKEINAALIYLLDHPEAPLSALMRYIKGPDFPTGG-IIQGLDGIKKAYKTGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + ++  G   I +TE+PY+V KS L+ KI  + + K +  + ++RDES  +   +
Sbjct: 240 RAKTEISDLKGGKKKIEITELPYEVVKSNLVSKIDAIRLNKGVAGIAEVRDESDREGMSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +   N+  + + ++  +F  +D++  +     V    + P  + L   L+ +L  R+EV+
Sbjct: 300 VIELNKGTNAEGILTYLFKKTDLQISYNF-NMVAIHNQRPVTVNLKQGLQAFLDFRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            +RS+F +     R  I++GL+     +DE++A IR     K    +   +F  T+ Q +
Sbjct: 359 LKRSAFELAKAQARQHIVEGLIRMLSILDEVVATIRASQNRKDATQNLIDKFQFTQPQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  Q+++E   L A+   ++ +L       + I  E+  + + ++  
Sbjct: 419 AIVTLQLYRLTNTDVTQLEAEFATLTAKINHLNLILTEESALKDVIRDELTAITKTYTTP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                 R +  E    D        I +E + V++S  G+ +     S   S       D
Sbjct: 479 ------RRSQIEAEVEDLVIDTAVTIAEEDVQVLVSRNGYYKRASLRSYKASDADNGLAD 532

Query: 550 S--LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ------LLIDLNHNQD 601
                     +TT  + + +  G     P   L   +                   +   
Sbjct: 533 DDLPVFVGQLNTTQHLFMFTNKGSVIYRPVHELPDFKWKDTGEHFSQQLANWRPDEYVIQ 592

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEE-KMKLVV---K 655
           +V            +V++ G       ++++  A  +K    +K+ +++ ++  V     
Sbjct: 593 VVAVDNLTQGGAFTIVTNDGFIKQTTLADMVPKAYKKKTSMAIKLKTDDSQVVNVAYTPT 652

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           VT   V ++  N   L F +  +PE+  R  GV+    +                     
Sbjct: 653 VTDQDVLLLSHNGVGLRFGLSDVPEIGARTAGVKAMDLRGDDTIQAALMVTSPDQQVAIV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           A     +          KR   G L+     +
Sbjct: 713 AENGAFKYMPVAEINHSKRANKGLLIF--TQK 742


>gi|257869693|ref|ZP_05649346.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2]
 gi|257803857|gb|EEV32679.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2]
          Length = 820

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/755 (28%), Positives = 386/755 (51%), Gaps = 29/755 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+
Sbjct: 4   KNNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKGFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 64  KSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++++  +L+ +++D V+    +++ + EP V P+K+PNLL NG++GI+ G AT IP+
Sbjct: 124 ARLSELSGELLKDIEKDTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  + LID+P  S++KL+E+I GPDFPTGGI+   +E I ++Y  GRG   +R
Sbjct: 184 HNLSEVIDGTIYLIDHPNASLDKLMEFIPGPDFPTGGILQ-GKEEIKKAYETGRGKVILR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   IV+ EIPY+V K+ L++K+ E+ + K+I  + ++RDE+      ++
Sbjct: 243 SKTRIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKKIDGIAEVRDETDRTGLQIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  +   ++  +F  ++++  +  NM  +   R PQ + L  IL+ ++ HRREV+ 
Sbjct: 303 VELKKDANAQGILNYLFKNTELQINYNFNMVAIDEMR-PQQVGLKHILESYVKHRREVIA 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           +RS + ++   +R  I+ GL+ A   +DE+IA IR+    K    +   +   TE Q +A
Sbjct: 362 KRSRYELKKAQKRQHIVDGLMKALSILDEVIATIRSSKDKKDAKNNLVVQHGFTEEQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +  Q+++E   L     ++  +LN   +    I  E+RE+K+ +    
Sbjct: 422 IVTLQLYRLTNTDITQLQAEAQELAETIRELTKILNEETELLKVIKKELREIKKKYHSD- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                R T  E    +     Q ++ +E + V ++  G+++     S   S         
Sbjct: 481 -----RMTEIEAEIQEIKIETQVLVAQEDVVVTVTTDGYVKRSSLRSYGASKPEELGMKE 535

Query: 551 LK---IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVT 604
                 +  A T D +LL++  G     P   L   +           +++L   + I+ 
Sbjct: 536 GDALLYSGQASTLDHLLLVTNKGNVIYRPIHELPDLKWKDLGEHISQTVMNLATEETILA 595

Query: 605 AFVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVT 657
            F Y   D     +++S  G       +E         +  T +K+  E +++  V    
Sbjct: 596 VFTYQELDPQKNFVLISKNGMIKQTRMTEFEPWRTYKSRPLTMMKLKDEADELVNVYLAD 655

Query: 658 GD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WI 712
            +    V +V      L + + ++P +  +  GV+  + K+            EG T  I
Sbjct: 656 QNEPLDVFLVSYRAFGLRYPLAEVPVVGPKAAGVKAMNLKEDDQIVNGLLVYSEGDTPVI 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               R   +           R   G +V +   ++
Sbjct: 716 MVTQRGAVKRMLAQEISQLGRAKRGLMVLRELKKN 750



 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 33/336 (9%), Positives = 100/336 (29%), Gaps = 16/336 (4%)

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            +LK      RE+  +  S RM  I+  ++ +K      +  ++++  +  +   K   +
Sbjct: 461 ELLKVIKKELREIKKKYHSDRMTEIEAEIQEIKIETQVLVAQEDVVVTVTTDGYVKRSSL 520

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             +  ++ +   +       L   +   +   L            +      +W  +   
Sbjct: 521 RSYGASKPEELGMKEGD-ALLYSGQASTLDHLLLVTNKGNVIYRPIHELPDLKWKDLGEH 579

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           I +     +         T     +  +    +  ++  +   +  +        +++  
Sbjct: 580 ISQTVMNLATEE------TILAVFTYQELDPQKNFVLISKNGMIKQTRMTEFEPWRTYKS 633

Query: 539 DL--SALHFKEGDSLKIALHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                     E D L     A   + + +   +            +   G   A    ++
Sbjct: 634 RPLTMMKLKDEADELVNVYLADQNEPLDVFLVSYRAFGLRYPLAEVPVVGPKAAGVKAMN 693

Query: 596 LNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEK 649
           L  +  IV   +   +    +++V+ +G    +   EI    R  +  + +        +
Sbjct: 694 LKEDDQIVNGLLVYSEGDTPVIMVTQRGAVKRMLAQEISQLGRAKRGLMVLRELKKNPHR 753

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           +  +       + +  +  +++    +QIP   R  
Sbjct: 754 IVYMGSGENQSLILTTQKGQMIEIETNQIPINDRTS 789


>gi|256961878|ref|ZP_05566049.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96]
 gi|256952374|gb|EEU69006.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96]
          Length = 820

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 214/754 (28%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 481 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750


>gi|195978265|ref|YP_002123509.1| DNA topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974970|gb|ACG62496.1| topoisomerase IV subunit A ParC [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 819

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 209/745 (28%), Positives = 376/745 (50%), Gaps = 22/745 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A + +ID+P   ++KL+E + GPDFPTGG I++    I ++Y  G+G   VR+
Sbjct: 182 NLSEVINAVIYMIDHPNAKLDKLMELLPGPDFPTGG-IIQGAAEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   I+VTE+PY+V K+ L++KI ++ +  R+P + ++RDES      +  
Sbjct: 241 RTEIEDLKGGKQQIIVTELPYEVNKAVLVKKIDDVRVNNRVPGIAEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   ++++  +  NM  +     P+ + L  IL  ++AHR+ ++ +
Sbjct: 301 ELKKDADSQTILNYLLKYTELQVNYNFNMVAIDHF-TPRQVGLQKILSSYIAHRKSIIIK 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI
Sbjct: 360 RSQFDKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST- 490
           + L+L  L   +   ++ E  +L      + +++ +    +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGNEATMYNVMKRELREVKKKFAGPRL 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
              +  +   E+  A     ++  +       +            H+  L  +  ++ D 
Sbjct: 480 SELQAESQAIEIDSASLILEEETFVSVTQGGYI----KRTSPRSFHASSLEEIGKRDDDH 535

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---LIDLNHNQDIVTAFV 607
           L     A TTD +LL +  G     P   L   R       L   + +   ++ ++ A +
Sbjct: 536 LIFVKQAKTTDHLLLFTNLGNVIYRPVYELTDLRWKDIGEHLSQAITNFAADEMVIYAEL 595

Query: 608 YDSTCKLLVV--SSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDHV 661
             S  + L    +  G     E  E++   +   K   + K+  +++++  +  +  + +
Sbjct: 596 IQSFEQGLYASVTQHGLIKRFERKEMMPWRSYKSKSIKYAKLKAADDRIIAIAPIVMEDL 655

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V +    L FS  +IP    +  GV+  + K        C    +    +    R   
Sbjct: 656 LLVTQQGYALRFSSQEIPIQGLKAAGVKGINLKAQDYLVSACPVNADSFFVL--TQRGAL 713

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFP 745
           +           R   G LV +   
Sbjct: 714 KRVAIADIPQTSRANRGLLVLRELK 738


>gi|315150487|gb|EFT94503.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0012]
          Length = 823

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 484 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSNIRSYTASKPEEIGMKEG 539

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVNNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753


>gi|314933533|ref|ZP_07840898.1| DNA topoisomerase IV, A subunit [Staphylococcus caprae C87]
 gi|313653683|gb|EFS17440.1| DNA topoisomerase IV, A subunit [Staphylococcus caprae C87]
          Length = 800

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 220/756 (29%), Positives = 411/756 (54%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  F   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVAFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L+++I GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKHIKGPDFPTGGIIQG-IDGIKKAYESGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   EE+  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEELRSGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + +   ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ F  TE Q +
Sbjct: 359 TNRTRYDLDHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEFDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++ ++L+      + I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEDEHAELEALIKELRNILDDHDALLSVIKDELNEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ M+  E + + +S+ G+I+   + S     ++ +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVILSVSHHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P      +  +  G+ +  ++ ++ ++ +V 
Sbjct: 533 DGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVVD 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    +++    ++ +  G        +       K    +KV   +++  V+++  D 
Sbjct: 593 VYNEKDFNNNAFYVMATKNGMIKKSSVPQFKTTRFNKPLVGMKVKDHDEIVNVIRLESDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S D++ +   R  G++  + KD     V+   + +  + +    R 
Sbjct: 653 LVTVLTHKGMSLTYSTDELSDTGLRAAGIKSINLKDEDHV-VMTESVSDSDSILMITQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + + +
Sbjct: 712 AIKRISYKVLQVAKRAQRGITLLKELKKNPHRIVDA 747


>gi|116627478|ref|YP_820097.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMD-9]
 gi|116100755|gb|ABJ65901.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMD-9]
          Length = 806

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 202/736 (27%), Positives = 379/736 (51%), Gaps = 26/736 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+ E+ +A + 
Sbjct: 121 DIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEVIDAVVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+R  +E++  G 
Sbjct: 181 MIDHPSAKLDKLMEFLPGPDFPTGA-IIQGKDEIRKAYETGKGRVVVRSRTEIEQLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +     +  D   +
Sbjct: 240 KQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIELKKDADSQTI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  RS F  +  ++
Sbjct: 300 LNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYIAHRRDIIVARSKFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+I++IR  +     K  +   +  +E Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVISLIRASENKSDAKENLKVSYDFSEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   +++E  NL  +   + +++   +  +N +  E+R++K+ F         R +  + 
Sbjct: 419 DIVALQNEEANLREQIATLAAIIGDERTLFNVMKRELRDIKKKFGND------RRSELQA 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHT 559
                     ++I +E   V I+  G+++     S +   +  +  ++ D L +   A T
Sbjct: 473 ETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASKIEEVGKRDDDDLILVQQAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFVYD--STCKL 614
           T  +L+ +        P   L   R           + + + +++++ A + D   T   
Sbjct: 533 TQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNFSKDEEVLYAEILDDFETGTY 592

Query: 615 LVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRKL 670
           L  +  G     E  E         K   + K+  E + +  V  +  D + ++ +    
Sbjct: 593 LATTKLGQIKRFERKEFTPWRTYKSKSVKYGKLKDESDVIVTVTPIQLDDIMIITQKGYA 652

Query: 671 LIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           L F+ D++P +  +  GV+  + KD      +     +    +    R+  +        
Sbjct: 653 LRFNADEVPVVGAKAVGVKAINLKDDDKVQAVFVANTQSFYLL--TQRASLKRVATSDIP 710

Query: 730 LGKRGGVGSLVPKGFP 745
             KR G G  V +   
Sbjct: 711 RAKRAGRGLQVLRELK 726


>gi|172057603|ref|YP_001814063.1| DNA topoisomerase IV, A subunit [Exiguobacterium sibiricum 255-15]
 gi|171990124|gb|ACB61046.1| DNA topoisomerase IV, A subunit [Exiguobacterium sibiricum 255-15]
          Length = 801

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 224/742 (30%), Positives = 394/742 (53%), Gaps = 23/742 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  +SL   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F  A++K
Sbjct: 5   QNILNLSLEQVVGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTEGNMFDRAYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  RYPLI  QGN G+IDGDSAAA RYTEA
Sbjct: 65  SAKTVGVVIGNYHPHGDSSVYEAMVRLSQEWKLRYPLIDMQGNNGSIDGDSAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++V+ LIL+G+++  VD+   +++   EP+V PS  PNLL NG++GI+ G AT IP H
Sbjct: 125 RLSKVSSLILEGINKQTVDYTLNFDDTTEEPLVLPSLLPNLLMNGSTGISAGYATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           +  E+ +AA+  I     +++ LL ++ GPDFPTGG +V+  + I +++  GRG   +R+
Sbjct: 185 HAGEVLDAAIGRISGTVHTVDDLLTHMQGPDFPTGG-VVQGLDGIKKAFETGRGKVIIRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   I++TE+PY+V K+ L++++ EL + +++  + ++RDE+  D   V+ 
Sbjct: 244 RATIETLRGGRQQIIITELPYEVNKANLVKRMEELRLDRKVEGVAEVRDETDRDGLRVVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + ++      +D++  +     V    R P+ M +  +L  +L+H ++V+ R
Sbjct: 304 ELKKEADAEGVLHFYLKQTDLQIAYNY-NMVAIHERTPRQMGVLALLDAYLSHVKDVVIR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R+SF ++   RR E++  L+ A   +DE +A+IR+             RFS T+ Q +A+
Sbjct: 363 RTSFDLEQAKRRQEVVSALMTAISVLDETLALIRSASNKSEAKDKLIERFSFTDRQAEAV 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E   L  E  +++ +LN  K +   I  E+  +KE  +    
Sbjct: 423 VMLQLYRLTNTDIVELQDEAAKLEKEIARLEKILNDEKTRNRLIIKELTVLKEQVAD--- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEGD 549
             +RR+T  E    +     + MI  E   V +S  G+I+     S   +      KE D
Sbjct: 480 --KRRST-VEAEVEELKLKTEVMIAVEETMVFVSKNGYIKRSSMRSFGATNDLPEMKEQD 536

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVT--- 604
            L     A TTD +++ +  G    +P   L   +     + +  L+ L+    I++   
Sbjct: 537 RLLYQGQAMTTDHVIVWTVQGNYLLIPVHQLPDTKWKDGGQHVANLVPLDPGDRILSVDL 596

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-KTFLKVSSEEKMKLVVKVTG-DHVA 662
              +D T   L V+ +G     + S+  A  +      +++ +++++      TG + + 
Sbjct: 597 VRTFDETSHCLFVTRQGMVKRSKLSDYNAQRKSKPLQGVRLRADDEVLYAKISTGQEQLF 656

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYN 720
           +  ++   L F+ D +P +  R  GV+  + +D   ++  I FK    +  +   G    
Sbjct: 657 LTTQHGFGLWFTEDDVPVVGVRAAGVKAINLRDQDVVAGAIGFKQAPNIVLLTQRGALKK 716

Query: 721 RSENDLLGWLGKRGGVGSLVPK 742
               D    +  R   G+ + +
Sbjct: 717 MRLAD-QFQVSNRALRGTQLLR 737


>gi|308177798|ref|YP_003917204.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
 gi|307745261|emb|CBT76233.1| putative DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
          Length = 877

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 225/777 (28%), Positives = 371/777 (47%), Gaps = 41/777 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M             EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MARKKSEEIPEDFVENIVDIDVTNEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILFQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M++MGL       KSAR+VGEV+GKLHPHGD ++YD++VRLAQ F  R PLI G GNFG+
Sbjct: 61  MAQMGLRPEKGHVKSARVVGEVMGKLHPHGDTAIYDAMVRLAQDFSLRLPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +   +DED V+F   Y+ +  +P V PS FPNLL NGT
Sbjct: 121 LD-DGPAAPRYTEARLAASAVAMTANLDEDVVNFVPNYDNQFMQPEVLPSAFPNLLVNGT 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT++  HN+ E+  AA  L+ +PE ++E+L+++I GPD P+GG +    + I 
Sbjct: 180 TGIAVGMATNMAPHNLSEVVAAAQHLLVDPEATVEELMKFIPGPDLPSGGSVT-GLDGIK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG FR RA   +E++      +VVTE+PY V   ++IEKI + +  K+I  + D
Sbjct: 239 DAYRTGRGLFRTRATVVLEKISARKSGLVVTELPYGVGPEKVIEKIKDGVNNKKISGISD 298

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +       ++       +P+ ++ S++  + ME  F +N   L     P+ M L  
Sbjct: 299 VVDLTDRHHGLKLVIELKNGFNPNAVLASLYKYTPMEDSFGINNVALV-NGQPRTMGLRE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPV 416
           +L  ++ HR +V+ RR++ R+   + R+ +++GLLIA ++ID++IAIIR+ +   + +  
Sbjct: 358 LLTVYVDHRLDVVRRRTTHRLAKREDRLHLVEGLLIAIVDIDDVIAIIRSSEQTAEARER 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++ F L+E Q   IL LRLR L K  + ++++E + L  E E++ ++L S +   N ++
Sbjct: 418 LMTVFDLSEPQASHILELRLRQLTKYSKLELETEAEQLRKEIEELRAILESDQLLRNLVS 477

Query: 477 CEIREVKEIFSKSTDLGRRR---------TTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            E+ ++ E F         +         T   E     K       +   P  V++S  
Sbjct: 478 DELGQMAETFGTPRRTKLLKSAQLAPLKGTALPEEVGTGKKAKLAMEVSDTPCWVLLSAT 537

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL--------PAGN 579
           G I   +  +    +    + D L   + +     I  L+T G+   +        P  +
Sbjct: 538 GQIARTQDRTDLDHSAARIKHDVLTSQVASSARGEIGALTTTGRIVRISLIDVPVLPESH 597

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                 HG  I   + L   + +           + + +  G    V         R   
Sbjct: 598 GFPQLAHGVPIAEFLKLGQAETVAALVPL--NQVVAIGTKNGVVKRVTPD--YPLNRDEF 653

Query: 640 TFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             + +  ++ +         D +  + ++ +LL FS   +    R G+G+          
Sbjct: 654 EAITLKDKDVVVAATPAQDADELVFITKHAQLLRFSASVVRAQGRTGQGMSGIKLGADDQ 713

Query: 698 S-----------DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                         +   I  G   +        +  +     +  R   G    + 
Sbjct: 714 VIFFGVVPGGSKQAVVATIAAGSQTLPGTSGQSVKLTDFSEFPVKGRATAGVRAHRF 770


>gi|261365318|ref|ZP_05978201.1| DNA topoisomerase IV, A subunit [Neisseria mucosa ATCC 25996]
 gi|288566249|gb|EFC87809.1| DNA topoisomerase IV, A subunit [Neisseria mucosa ATCC 25996]
          Length = 769

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 406/750 (54%), Gaps = 43/750 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 18  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLAAGAKPVKSARVVGE 77

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 78  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 137

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 138 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 197

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 198 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 257

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 258 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 317

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 318 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 377

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 378 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 437

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 438 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 497

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 498 DMKQFGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 548

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 549 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 608

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+  S G  FI +  +++   + GK  + V S E +   + V     
Sbjct: 609 PVAMLTGQPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSL 668

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 + +   + +LL FSI ++  M +G+G++L S  +G   + +             
Sbjct: 669 INPDCKIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTEGASLEHVLVTTAAEFIVETV 728

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLV 740
             R           D+    GKRG  G ++
Sbjct: 729 GKRGAAHQEKLRICDIE---GKRGKKGKVL 755


>gi|315160387|gb|EFU04404.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0645]
          Length = 823

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 388/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y ++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYKAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 484 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753


>gi|294338942|emb|CAZ87286.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Thiomonas sp. 3As]
          Length = 777

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/774 (35%), Positives = 424/774 (54%), Gaps = 43/774 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M        +   E++  +++L       YL YA+S +K RA+PD+ DG KPV RRI++A
Sbjct: 1   MSEQATLEFDNRPEDDTDSLALGDYARRAYLDYAISVVKGRALPDVCDGLKPVQRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  MGL   A   KSAR+VG+V+G+ HPHGDQ+ YD+LVRL+Q F QRYPLI GQGNFG+
Sbjct: 61  MWRMGLTADAKPVKSARVVGDVLGRFHPHGDQAAYDALVRLSQNFAQRYPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR++ +A L+L  +D    DF   Y+   +EP + P++ P +L NG 
Sbjct: 121 RDGDGAAAMRYTEARLSPIARLLLSEIDAGTADFIPNYDGSTTEPRLLPARLPFVLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT IP+HN++E+  A +AL+ NP + +   L  + GPDF TGG ++ S + I 
Sbjct: 181 SGIAVGMATEIPAHNLREVASACVALLKNPRLELADALALMPGPDFATGGQLISSPQDIA 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL--- 297
            +Y +GRG  +VRARW VEE+ RG W +V+ E+P+      ++E+I EL   K  P    
Sbjct: 241 AAYAVGRGSLKVRARWTVEELARGQWQLVINELPHGTSTQMVLEEIEELSNPKIRPGKKA 300

Query: 298 ---------------LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                          L+ +RDES  +  VR+V  P++  +D    + ++   + +ET  P
Sbjct: 301 LAPEQIALKATLLNLLDTVRDESGREAAVRLVFEPRSSRIDQAEFVNTLLARTSLETSVP 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +N+ ++     P+   L  IL+EW+A+RR+ + RRS  R++ +D R+ IL+G     LN+
Sbjct: 361 INLVMIGTDGKPRQKGLMDILREWVAYRRDTVQRRSKHRLEQVDARIHILEGRQQVLLNL 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I  IRN D P+P +++RF LTE Q D IL++RLR L +LE  +I  EL     E  +
Sbjct: 421 DEVIETIRNSDDPRPALMARFDLTELQADDILDMRLRQLARLEAIRIDKELAAQRTEAAE 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL   K    +I  EI    + F        RRT      +A++  + +  +  E +
Sbjct: 481 LQKLLADEKAMTRRIISEIEADAKQFGD-----DRRTLI----QAEQRAVAEVKVVDEAV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TV++S +GW+R+ K H + LSAL FK GD+L       + D +++L +DG+AY++   +L
Sbjct: 532 TVIVSQKGWLRTQKGHGLVLSALTFKPGDALYATFECRSVDPLVVLGSDGRAYSIDVADL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG G+ +   I+L      +       T  LL+ +++G  F+    + ++  R GKT
Sbjct: 592 PGGRGDGQPVTSFIELAPGTQALHYLAGARTTALLLWTAQGFGFVTRIGDALSRQRAGKT 651

Query: 641 FLKVSSEE----KMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
           F+ +   +     + L + V       +A++    +LLI++  ++  +SR G+GV L   
Sbjct: 652 FMTLEDGDVPQRPLVLGIDVGDSPTGRLALLSTGGRLLIYAAAEVKALSRGGRGVTLMEQ 711

Query: 693 K-DGGISDVICFKICEGLTWIDSAGRSYNRSENDL-----LGWLGKRGGVGSLV 740
                +  +           +   GR        L       +LGKR   G  +
Sbjct: 712 DAKEALLSIAHLVGEREALLVSGKGRGGTERSTSLSGTQQALYLGKRAKRGRKL 765


>gi|258424794|ref|ZP_05687668.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9635]
 gi|257844958|gb|EEV68998.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9635]
          Length = 800

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 211/756 (27%), Positives = 396/756 (52%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RR+++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRMLYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V K  L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKGSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VYNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKVEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
             +  +  +  + KR   G  + K   ++  + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|325134719|gb|EGC57358.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M13399]
 gi|325144839|gb|EGC67127.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240013]
          Length = 767

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 263/767 (34%), Positives = 404/767 (52%), Gaps = 43/767 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQAHAPHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP HN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPPHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQ 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL
Sbjct: 421 VIRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   I  E++   + +  +     RRT   E  RA            EPIT+++S
Sbjct: 481 GDENEKRKLIIKEMQADMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  +  LI+L +    V           L+ SS G  FI + ++++   + GK  +   
Sbjct: 592 DGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTD 651

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   + V           +       + L F I ++  M++GKG+++     G   
Sbjct: 652 SGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESL 711

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
                     +       R          + L     KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRIPVSLLE---AKRGKKGKLLP 755


>gi|313890155|ref|ZP_07823790.1| DNA topoisomerase IV, A subunit [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121516|gb|EFR44620.1| DNA topoisomerase IV, A subunit [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 819

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 205/747 (27%), Positives = 379/747 (50%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M + G  F   F+K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMYKDGNTFEKGFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L+ ++++ V F   +++ + EP V P+ +PNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEISGYLLEDIEKNTVPFAWNFDDTEKEPTVLPAAYPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + LID+P+  ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDATVYLIDHPKAKLDKLMEFLPGPDFPTGS-IIQGQDEIRKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE+  G   I+VTEIPY++ KS L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 KTEIEELKGGKQQIIVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRSGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P  + +  IL  ++AHR+ ++  
Sbjct: 301 ELKKDADTQTVLNYLLKYTDLQVNYNFNMVAID-NYTPHQVGIQKILSSYIAHRKSIIIE 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F M   ++R+ I++GL+     +DE+IA+IR  +     K  +   ++ TE Q +AI
Sbjct: 360 RSKFDMAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYAFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E + L      + +++      +N +  E+REVK+ F     
Sbjct: 420 VTLQLYRLTNTDIVTLQNEEEELGNLITTLRAIIADEATMYNVMKRELREVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+I+     S +   L  +  ++ 
Sbjct: 478 ----RRSQLQKEAETIEIDTASLIVEEETFVSLTQGGYIKRTSPRSFNASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           DSL     A TT  +L+ +  G     P   L   R           + +  +++ ++ A
Sbjct: 534 DSLIFVASAKTTQHLLIFTDLGNVIYRPVHELQDIRWKEIGEHLSQTITNYGNDEKVLYA 593

Query: 606 FVYDSTCKLLV--VSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
            + D         V+  G     E +E+        K   + K+   ++++  V  +  +
Sbjct: 594 ELVDDFKSGTYYSVTQLGQIKRFERAELAPWRTYRSKSLKYAKLKNEQDRIIAVQPILFE 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + ++      L FS +++P    +  GV+  + K             +    +    R 
Sbjct: 654 DIMLISHQGYALRFSNEEVPVQGLKTAGVKAMNLKKDDYIASAFLAYTDSFFVL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 SLKRVATEDIPQTSRANRGLLVLRELK 738


>gi|21518734|gb|AAM60779.1| topoisomerase IV subunit A [Corynebacterium urealyticum DSM 7109]
          Length = 800

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 212/757 (28%), Positives = 391/757 (51%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D +  +IR+       K  ++     TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKAVSILDRVFELIRSSKNKRDAKENLIEVVEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           A + L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 ATVMLQLYRLTNTDIVALEGEHKELEALIKQLRDILDNHDALLNVIKEELNEIKKKFKSE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E    +     + M   E + + ++  G+I+     S     +  +  K
Sbjct: 479 ------RLSLIEAEIEEIKIDTEVMEPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P      +  +  G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            F    +++    +  +  G                K     KV   + +  V++   D 
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R 
Sbjct: 653 LITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
             +  +  +  + KR   G  + K   ++   + +++
Sbjct: 712 SLKRISFKILQVAKRAQRGITLLKEL-KNNPHRIVAA 747


>gi|257884845|ref|ZP_05664498.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,501]
 gi|257820683|gb|EEV47831.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,501]
          Length = 817

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 214/754 (28%), Positives = 396/754 (52%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+   ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQ-GKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHM-TPHQVGLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR     K    +    F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S        +  +EG
Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L   +         Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVT- 657
           F Y    +    + +S  G       +E         +  + +K+   E+++  V     
Sbjct: 598 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 657

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
             G  V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 658 RPGLDVFLVTYQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 718 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 751


>gi|119963748|ref|YP_947533.1| DNA topoisomerase IV subunit A [Arthrobacter aurescens TC1]
 gi|119950607|gb|ABM09518.1| putative DNA gyrase subunit A [Arthrobacter aurescens TC1]
          Length = 838

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 230/773 (29%), Positives = 370/773 (47%), Gaps = 54/773 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MS+MGL       K
Sbjct: 19  ENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGLRPDRGHVK 78

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D D  AA RYTEA
Sbjct: 79  SARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAPRYTEA 137

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  +   +DED VDF   Y+ + ++P V P+ FPNLL NGT+GIAVGMAT++P H
Sbjct: 138 RLAAAALTMTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGTTGIAVGMATNMPPH 197

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  LI NP  ++E+++ +I GPD PTGG IV   + + ++Y  GRG F+ RA
Sbjct: 198 NLVEVIAAARHLIANPGATLEEIMRFIPGPDLPTGGRIV-GLDGVRDAYATGRGSFKTRA 256

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE++      +VVTE+PY V   ++IEKI + + +K++  + D+ D +  +    ++
Sbjct: 257 KVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNSKKLTGISDVVDLTDRNHGLRLV 316

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                  +P+ +++ ++  S ME  F +N   L  G+  Q + L  +L+ ++ HR  V+ 
Sbjct: 317 IELKNGFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQP-QTLGLLQLLQVYVEHRLNVVR 375

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+SFR+     R+ +++GLLIA ++IDE+I IIR+ D+    +  ++S + LTE Q + 
Sbjct: 376 RRTSFRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEASAARERLMSIYDLTEIQANY 435

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L K    +++ E D L  E E ++++L S +   + ++ E+  + E +    
Sbjct: 436 ILELRLRQLTKYSRLELEKEQDELRREIEALEAILASDELLRDLVSGELAVIAEKYGTP- 494

Query: 491 DLGRRRTTFCEVSRADKATLQ----------------QAMIEKEPITVVISNRGWIRSLK 534
               RRT   E                             I  +P   ++S  G I    
Sbjct: 495 ----RRTVLLESEAVSPTVAAALAASVPGPKGKAAALPLEIPDDPCWALLSVSGQIARTS 550

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG------- 587
           +      A    + D  +  +       I  +++ G+   L   ++              
Sbjct: 551 NQEPLAEAGPRTKHDVFRSVVKTTARGEIGAVTSQGRMLRLQVMDMPVLPPVSGLPNLAG 610

Query: 588 -EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
               +  I L   + +V     D+   L + + +G    V+        R+    + +  
Sbjct: 611 GVPAKDFITLLKGETLVAFVPLDA--VLAIGTVQGVVKRVQPD--YPLNREDWEIIALKD 666

Query: 647 EEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS----- 698
           ++ +  V     D   +  V    +LL FS   +    R   G+       G        
Sbjct: 667 KDLVLAVEPAQDDNVDLVFVTRQAQLLRFSASNVRPQGRTAGGMAGIKLAAGDEVIHFGT 726

Query: 699 ------DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                   +   I      +        +           R   G  V +   
Sbjct: 727 VRADDPAAVVVTIAGTNGALPGTAPGTAKVTAFEEYPAKGRATGGVRVHRFLK 779


>gi|291280741|ref|YP_003497575.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1]
 gi|290755443|dbj|BAI81819.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1]
          Length = 833

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 245/782 (31%), Positives = 401/782 (51%), Gaps = 62/782 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAF 72
           +       +   ++  Y+ YA+S I  R++PD+RDG KPV RRI++ M  ++       +
Sbjct: 5   KSKTIKNDIVDIMKHNYIDYAMSVIIGRSLPDIRDGLKPVQRRILYDMYHDLHNTHEKPY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VYD++VR+AQ FV RYPLI GQGNFG+IDGDS AA RYT
Sbjct: 65  KKSARIVGDVIGKYHPHGDAAVYDTIVRMAQDFVFRYPLIDGQGNFGSIDGDSPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++AE +L+ +D+D VDF   Y+    EP V P+K PNLL NGT+GIAVGMAT+IP
Sbjct: 125 EIRMTKIAEEMLKDIDKDTVDFIPNYDGSLKEPTVLPTKLPNLLINGTNGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNP----------------------EISIEKLLEYIIGPDFPTGG 230
            HN++E+ +A L L+ N                            K++  +  PDFPTGG
Sbjct: 185 PHNLKEVIKACLYLLKNERSKSYLKEFYETNSVKVSDDIINQIHNKIMTILKAPDFPTGG 244

Query: 231 IIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
           II+ S++ I + YR G G  +++A+  V +       I++TE+PY V KS LI KIA+L 
Sbjct: 245 IIINSKD-IPKIYRNGTGSIKIKAKIEVNKD-----QIIITELPYMVNKSDLIIKIADLS 298

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
            + +I  + DI+DES +D+RIV     +  DP++++  ++  + + T F  N   +   +
Sbjct: 299 KSNKIQGIADIKDESTKDIRIV-IKLRKKTDPNIVLNQLYKYTQLTTTFSCNFVGIYKNK 357

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAII 407
            P  + +  +L  +L+ R +++ RR+ F ++    ++  LKGL I      N  +II   
Sbjct: 358 -PYQLNILDLLFNFLSFRLDIINRRTQFLLRKNQNKLHKLKGLKIAVENIDNFVKIIKTA 416

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           +N       ++ ++ L + QV+ ILN+RL+ L  LE  ++ +E        +    +LNS
Sbjct: 417 KNTTDATQKLMKKYKLDDIQVNEILNMRLQRLTSLEIEKLLNEYQETKENIQTYKEILNS 476

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +Q   I  E+ ++++ + K+     +R T  E    D +   + +I   P+ ++ ++ 
Sbjct: 477 YDKQIELIINELHDLQKNYCKN----DKRLTKLE--DEDISFDIKNLIPDNPVIIIYTDD 530

Query: 528 GWIRSLKSHSVDL--SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG-- 583
           G+I+      V       + ++ DS K  ++     ++LL +  GK Y L   ++     
Sbjct: 531 GFIKKENISKVTKTGKTTNLQKNDSAKFIINTTNHKKLLLFTDTGKLYYLNVYDIPETGS 590

Query: 584 -RGHGEAIQLLIDLNHNQDIV---TAFVYDSTCKLLVV--SSKGNAFIVEESEIIANTRK 637
               G  I  LI LN N  IV   T    +      +V  + KG        E   N++ 
Sbjct: 591 GNSKGTHISNLIKLNTNDKIVLIRTQIHENEYSNYDMVCITEKGLVKRTSLEEY-KNSKN 649

Query: 638 GKTFLKVSSEEKMKLVVKVT---GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
           G   LK++S++K+  V  +     +++ ++ +  K +IF+I+Q+  ++R  KGV      
Sbjct: 650 GSLVLKLNSDDKLLKVFFINKQEENYLLMLSKQSKYIIFNINQVRTVARLAKGVVGMLLN 709

Query: 694 DGGISDVIC------FKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +     V C               +     + + +        +  R   GS V K   +
Sbjct: 710 NENDKIVDCAIITKPMLENPNEYLLCTITNKGFIKLTPLEEYSVQNRKTKGSYVMKVTNK 769

Query: 747 SG 748
           +G
Sbjct: 770 TG 771



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 104/343 (30%), Gaps = 21/343 (6%)

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
              D  ++  +    ++         +      E +   +   +  + +I I  ++   K
Sbjct: 475 NSYDKQIELIINELHDLQKNYCKNDKRLTKLEDEDISFDIKNLIPDNPVIIIYTDDGFIK 534

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
              +S+ + T    +   N   + +     ++      +           +   +     
Sbjct: 535 KENISKVTKTGKTTNLQKNDSAKFIINTTNHKKLLLFTDTGKLYYLNVYDI--PETGSGN 592

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
                       + +  +   RT   E   ++       +   E   V  ++    ++ K
Sbjct: 593 SKGTHISNLIKLNTNDKIVLIRTQIHENEYSNY----DMVCITEKGLVKRTSLEEYKNSK 648

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
           + S+ L      +   +         + +L+LS   K        + +     + +  ++
Sbjct: 649 NGSLVLKLNSDDKLLKVFFINK-QEENYLLMLSKQSKYIIFNINQVRTVARLAKGVVGML 707

Query: 595 DLNHNQDIVTA------FVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKT--FLKV- 644
             N N  IV         + +    LL  +++KG   +    E     RK K    +KV 
Sbjct: 708 LNNENDKIVDCAIITKPMLENPNEYLLCTITNKGFIKLTPLEEYSVQNRKTKGSYVMKVT 767

Query: 645 -SSEEKM---KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
             + E +    L      ++  ++    +L+   I+ I   +R
Sbjct: 768 NKTGEPILVQILAKNSKTNNCILITNTGQLIKIDINNISVTNR 810


>gi|254384499|ref|ZP_04999840.1| DNA topoisomerase IV subunit A [Streptomyces sp. Mg1]
 gi|194343385|gb|EDX24351.1| DNA topoisomerase IV subunit A [Streptomyces sp. Mg1]
          Length = 818

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 227/776 (29%), Positives = 369/776 (47%), Gaps = 39/776 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   TPPPEDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDS 125
                + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++   D 
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE +M     L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG SGIAV
Sbjct: 128 PAAMRYTECKMADATSLMTESIDEDTVDFTANYDGQEREPVALPAAYPNLLVNGASGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI  P+  +E L+ ++ GPD PTGG IV     I ++Y  
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIRYPQADLEALMRFVPGPDLPTGGRIV-GLSGIKDAYEN 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +
Sbjct: 247 GRGTFKIRATVAVETVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +
Sbjct: 307 DRSHGLRLVIEIKNGFHPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           L HR EV+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ D     K  ++ RF
Sbjct: 366 LDHRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLIERF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q   IL+  LR L + +  +++SE D L  E +++  +L S  +    ++ E+  
Sbjct: 426 SLSEIQTQYILDTPLRRLTRFDRIELESERDRLNGEIDELTGILESDSELRKLVSAELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V + F        RRT   E S           +   P  V++S+ G +    +      
Sbjct: 486 VAKKFGTE-----RRTVLLE-SAGTPVAAVPLEVADTPCRVLLSSTGLLARTANGEALPQ 539

Query: 542 ALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---------EAI 590
                          + A     + ++++ G+   L   +L                   
Sbjct: 540 EEGGARAKHDLIVSQVAATARADVGVVTSYGRLLRLSVIDLPQLPDTHAAPNLAGGAPVA 599

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           + L  L  ++ +V     D + + L + + +G    V   +  AN +     + +   ++
Sbjct: 600 EFLSGLEADEKVVCLTSLDESSQGLALGTEQGVVKRV-VPDYPAN-KDELEVITLKDGDR 657

Query: 650 MKLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKI 705
           +   V  +   + +  + ++ +LL +   Q+    R   G+      D   +        
Sbjct: 658 IVGAVELRTGEEDLVFITDDTQLLRYPASQVRPQGRPAGGMAGIKLSDNTKVIHFSAVDP 717

Query: 706 CEGLTWIDSAGRSY--------NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    AG            +           R   G    +        + +
Sbjct: 718 ARDAFVFTVAGSHGTLDDSVTSGKLTPFDQYPRKGRATGGVRCQRFLKGEDVLVLA 773


>gi|254670048|emb|CBA04870.1| topoisomerase IV subunit A [Neisseria meningitidis alpha153]
          Length = 777

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 265/770 (34%), Positives = 408/770 (52%), Gaps = 47/770 (6%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +M
Sbjct: 10  TMNTQAHAPHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDM 69

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD
Sbjct: 70  GLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGD 129

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIA
Sbjct: 130 GAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIA 189

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y 
Sbjct: 190 VGMATEIPSHNLNEVTQAAIALLKKPTLETSDLMQYIPAPDFAGGGQIITPADELRRIYE 249

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------- 297
            G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K           
Sbjct: 250 TGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQD 309

Query: 298 -----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
                      ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ 
Sbjct: 310 QLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLV 369

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           ++ +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I
Sbjct: 370 MMGLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVI 429

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
            +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ L
Sbjct: 430 KVIRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIL 489

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L+   ++   I  E++   + +  +     RRT   E  RA            EPIT+++
Sbjct: 490 LSDENEKRKLIVKEMQADMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLIL 540

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           S +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GR
Sbjct: 541 SEKGWIRSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGR 600

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +  
Sbjct: 601 GDGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSSGYGFITKLGDMVGRVKAGKVVMTA 660

Query: 645 SSEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI 697
            S E +   V V           +       + L F I ++  M++GKG+++     G  
Sbjct: 661 DSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGE- 719

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWL------GKRGGVGSLVP 741
             +    +   L  +  +     R        +       KRG  G L+P
Sbjct: 720 -SMTHTAVSSELEILIESE---GRRGAAHKDRIPISLLEAKRGKKGRLLP 765


>gi|225075739|ref|ZP_03718938.1| hypothetical protein NEIFLAOT_00755 [Neisseria flavescens
           NRL30031/H210]
 gi|224952905|gb|EEG34114.1| hypothetical protein NEIFLAOT_00755 [Neisseria flavescens
           NRL30031/H210]
          Length = 767

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 406/750 (54%), Gaps = 43/750 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 20  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 79

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 80  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 139

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 140 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 199

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 200 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 259

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 260 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 319

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 320 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 379

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 380 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 439

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   +  E++ 
Sbjct: 440 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLMIKEMQA 499

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + +  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 500 DMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 550

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  I  LI+L +   
Sbjct: 551 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPISSLIELQNGAK 610

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            +           L+  S G  FI +  +++   + GK  + V S E +   V V     
Sbjct: 611 PIAMLTGLPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPVAVYASSL 670

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 V +   + +LL FSI ++  M +G+G++L S  DG   + +             
Sbjct: 671 INPDCKVVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTDGASLEHVLVTTAAEFIVETV 730

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLV 740
             R           D+    GKRG  G ++
Sbjct: 731 GKRGAAHQEKLRICDID---GKRGKKGKVL 757


>gi|282862344|ref|ZP_06271406.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
 gi|282562683|gb|EFB68223.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
          Length = 818

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 226/775 (29%), Positives = 372/775 (48%), Gaps = 38/775 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI+  M+EMGL
Sbjct: 8   TPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDS 125
                + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++   D 
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DED VD++  Y+ ++ EPVV P+ +PNLL NG SGIAV
Sbjct: 128 PAAMRYTECRMADATSLMTESIDEDTVDYQSNYDGQEREPVVLPAAYPNLLVNGASGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI +P   ++ L+ ++ GPD PTGG IV     I ++Y  
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIRHPNADLDALMRFVPGPDLPTGGRIV-GLGGIKDAYAS 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   +E V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +
Sbjct: 247 GRGTFKIRATVAIESVTARRKGLVVTELPFSVGPEKVIAKIKDLVGAKKLQGIADVKDLT 306

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             +    ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +
Sbjct: 307 DREHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           L HR EV+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ D     K  ++ RF
Sbjct: 366 LDHRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLMERF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q   IL+  LR L + +  +++SE D L  E   + ++L S  +    ++ E+  
Sbjct: 426 SLSEIQTQYILDTPLRRLTRFDRIELESERDRLNDEIAALTAILESDAELRKLVSSELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--VD 539
           V + F        RRT   E + +  A+     +  +P  V++S+ G +    +    V 
Sbjct: 486 VAKKFGT-----DRRTVLLESAGSQVAS-VPLEVADDPCRVLLSSTGLLARTANADPIVV 539

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA--------IQ 591
                  + D +  A+ A     +  +++ G+   L   +L        A        I 
Sbjct: 540 AEDTKRTKHDVIVSAVPATARGDVGAVTSTGRLLRLSVIDLPQLPDTHTAPTLSGGAQIS 599

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + L   ++++     +     L + + +G    V         +     + +   +++
Sbjct: 600 EFLTLETGEELICLSTLEEESPGLAIGTLQGVVKRVVPD--YPPNKDEWEIISLKDGDRI 657

Query: 651 KLV--VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKIC 706
                +    + +  +  + +LL +   Q+    R   G+       D  +         
Sbjct: 658 VGATQLLTGEEDLVFITSDAQLLRYPAAQVRPQGRAAGGMTGIKLGADAAVLSFTAVDPA 717

Query: 707 EGLTWIDSAGRSYN--------RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   AG            +           R   G    +        + +
Sbjct: 718 ADAVVFTVAGSHGTLDDSERTWKLTPFDQYPRKGRATGGVRCQRFLKGEDVLVFA 772


>gi|329736620|gb|EGG72886.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis VCU045]
          Length = 800

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 220/748 (29%), Positives = 403/748 (53%), Gaps = 23/748 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDYSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  L  ID P+I+I +L++YI GPDFPTGGII    E I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQG-IEGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   ++  SD++  +     V      P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDANSESIKNYLYKNSDLQISYNF-NMVAISEGRPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ +  TE Q +
Sbjct: 359 TNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +  E   ++    ++ M+  E + + ++  G+I+   + S     ++ +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P      +  +  G+ I  ++ ++ ++++V 
Sbjct: 533 DGDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    + +    ++ +  G       S+       K    +KV  ++++  VV++  D 
Sbjct: 593 VYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S +++ +   R  GV+  + KD     V+   + +  + I    R 
Sbjct: 653 LITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYV-VMTEDVNDSDSIIMVTQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  +  +    KR   G  + K   +
Sbjct: 712 AMKRIDFNVLQEAKRAQRGITLLKELKK 739


>gi|255975796|ref|ZP_05426382.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2]
 gi|255968668|gb|EET99290.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2]
          Length = 820

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMYGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 481 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750


>gi|110004709|emb|CAK99044.1| probable topoisomerase iv subunit a protein [Spiroplasma citri]
          Length = 1132

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 224/761 (29%), Positives = 399/761 (52%), Gaps = 34/761 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN+     EN    SL   + ER+  YA   I++RA+PD+RDG KPV RRI+ AM+E+ 
Sbjct: 1   MSNNEK---ENELVYSLNDIMSERFGRYAKYIIQDRALPDVRDGLKPVQRRILFAMNELR 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L F  ++KKSARIVGEVIGK HPHGD SVYD++VRL+Q +  RYPLI   GN G+IDGD 
Sbjct: 58  LTFNTSYKKSARIVGEVIGKYHPHGDTSVYDAMVRLSQNWKVRYPLIDMHGNNGSIDGDP 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+++++  +LQ +D+  V F   +++ + EPVV P+ FPNLL NG++GIA 
Sbjct: 118 AAAMRYTETRLSEISSFLLQDLDKKTVAFAPNFDDSEQEPVVLPALFPNLLVNGSTGIAA 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT+IP HN+ EI  A +  I+ P+ +++ L++Y+ GPDFPTGG I++ +  I+E+Y+ 
Sbjct: 178 GYATNIPPHNLHEIINATIHFIEKPDSTVKDLVKYVKGPDFPTGG-IIQGKSGILEAYQT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++     +   +  +V+TEIPY+V K  L++KI ++   +    ++++RDE+
Sbjct: 237 GKGKIIVRSK-----IKFENNALVITEIPYEVVKQDLVKKIDDIKYNEPGLNIKEVRDET 291

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    +  + + + + +   ++++  +     V    + P+ + L  IL  ++
Sbjct: 292 DREGLRIVIELGKQANVETVRKFLLKNTNLQISYNF-NMVAIANKQPRQLGLKEILTHYV 350

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            H++EV+   S F +    +R EI+ GL+     +DE+IA+IR        + +   +F 
Sbjct: 351 EHQQEVITNHSRFELARAQKRSEIVAGLIKTISILDEVIAVIRYSKDRSDAIHNLVKKFG 410

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T+ Q +AI+ LRL  L   +  Q+K+E   L+A   ++ ++L    +  + I  ++  +
Sbjct: 411 FTQIQAEAIVQLRLYRLTSTDILQLKAEQKELIATIAELKAILRDINKLNSVIIHQLELI 470

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW---IRSLKSHSVD 539
           K+ F+      RRR+       A +    + +IEK  + + IS  G+   + + +   + 
Sbjct: 471 KKKFA-----SRRRSVIENEIEAIEIQKTETIIEK-DLNIWISRDGYLKALENNQLARLV 524

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLN 597
                 K GD       A+T+D+ILL+++ G    +P   + + R     E I  + +L 
Sbjct: 525 NEEFKRKPGDLWIADFQANTSDKILLITSKGNYVIIPVYQIKTVRLRDIGEHINTISELP 584

Query: 598 HNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
             + I++AF+ +        +++ +  G        +  A    K    + + +++++  
Sbjct: 585 GEEKIISAFLLNDFNKKEQYIMLATKNGMIKKTAVKDFEATRISKALKAINLKNDDEVVA 644

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710
              V    +V +   N  ++ +   QIP +  R  GV+  + +D  + +      CE   
Sbjct: 645 SQLVGHHPYVVITTANGFIVKYHKKQIPTLGLRTAGVKSINLRDDVVINAGY---CEDDN 701

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +        +  +        R   G+ + K      + +
Sbjct: 702 LVLITNLHTGKKISLTEIPTSTRPVKGTRLYKLNKDINELV 742


>gi|191638406|ref|YP_001987572.1| DNA topoisomerase IV subunit A [Lactobacillus casei BL23]
 gi|190712708|emb|CAQ66714.1| Topoisomerase IV, subunit A [Lactobacillus casei BL23]
 gi|327382435|gb|AEA53911.1| DNA topoisomerase IV (Subunit C) [Lactobacillus casei LC2W]
 gi|327385634|gb|AEA57108.1| DNA topoisomerase IV (Subunit C) [Lactobacillus casei BD-II]
          Length = 814

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 211/760 (27%), Positives = 368/760 (48%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F
Sbjct: 1   MANQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYT
Sbjct: 61  RKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP
Sbjct: 121 EARLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  A L L+ +P   ++ L++Y+ GPDFPTGG I++  + I ++Y  GRG   V
Sbjct: 181 PHNLREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGG-IIQGLDGIKQAYETGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R  +E +  G   IVVTEIPY V K+++I+KI EL I K++  + ++RDES      V
Sbjct: 240 RSRTHIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  ++    P+++ L  +L+ ++ HRR+V+
Sbjct: 300 VIELKKEADAHGILNYLFKNTDLQIAYNFNMVAIADM-QPKLLGLKAMLEAYVEHRRDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ F +     R  I++GL+     +D++IA IR          +   +F  +E Q +
Sbjct: 359 TRRTRFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKKFDFSEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +   
Sbjct: 419 AIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPAARDRVIEGELKRIAKEYGD- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                RR++  +             +  E + V +S  G+++     S    D +    K
Sbjct: 478 ----DRRSSI-QAKIETLEVATTVTVADETVMVQVSRDGYVKRSSLRSYQAVDPADNGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
             D         T   + +++  G     P         +  GE +   + L  ++ ++ 
Sbjct: 533 ANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKDTGEHLSQTVGLGTDEKVLA 592

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMKLVVKVTG 658
            F +D        ++ SS G       S++        K    +K+     +      T 
Sbjct: 593 VFAFDQLDGAGSFVLGSSDGYIKQTALSDLQPQRTYKSKPMMAMKLKDPAAIVTNAYFTT 652

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWID 713
           D    V VV  +   L F +  +  +  R  GV+    K D  + + I  K         
Sbjct: 653 DQQQDVFVVSRHAYGLTFPLSDVSTVGARATGVKSMDLKPDDEVVNFILVKDPTTAKVGI 712

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
              R   +           R   G LV +   R   + ++
Sbjct: 713 LTQRGAFKKMALSEVGEMSRARRGLLVLRELKRDPHRIVA 752


>gi|301066455|ref|YP_003788478.1| DNA topoisomerase IV subunit A [Lactobacillus casei str. Zhang]
 gi|300438862|gb|ADK18628.1| DNA topoisomerase IV subunit A [Lactobacillus casei str. Zhang]
          Length = 814

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 211/760 (27%), Positives = 368/760 (48%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F
Sbjct: 1   MANQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYT
Sbjct: 61  RKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP
Sbjct: 121 EARLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  A L L+ +P   ++ L++Y+ GPDFPTGG I++  + I ++Y  GRG   V
Sbjct: 181 PHNLREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGG-IIQGLDGIKQAYETGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R  +E +  G   IVVTEIPY V K+++I+KI EL I K++  + ++RDES      V
Sbjct: 240 RSRTHIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  ++    P+++ L  +L+ ++ HRR+V+
Sbjct: 300 VIELKKEADAHGILNYLFKNTDLQIAYNFNMVAIADM-QPKLLGLKAMLEAYVEHRRDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ F +     R  I++GL+     +D++IA IR          +   +F  +E Q +
Sbjct: 359 TRRTRFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKKFDFSEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +   
Sbjct: 419 AIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDVLARPAARDRVIEGELKRIAKEYGD- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                RR++  +             +  E + V +S  G+++     S    D +    K
Sbjct: 478 ----DRRSSI-QAKIETLEVATTVTVADETVMVQVSRDGYVKRSSLRSYQAVDPADNGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
             D         T   + +++  G     P         +  GE +   + L  ++ ++ 
Sbjct: 533 ANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKDTGEHLSQTVGLGTDEKVLA 592

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMKLVVKVTG 658
            F +D        ++ SS G       S++        K    +K+     +      T 
Sbjct: 593 VFAFDQLDGAGSFVLGSSDGYIKQTALSDLQPQRTYKSKPMMAMKLKDPAAIVTNAYFTT 652

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWID 713
           D    V VV  +   L F +  +  +  R  GV+    K D  + + I  K         
Sbjct: 653 DQQQDVFVVSRHAYGLTFPLSDVSTVGARATGVKSMDLKPDDEVVNFILVKDPTTAKVGI 712

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
              R   +           R   G LV +   R   + ++
Sbjct: 713 LTQRGAFKKMALSEVGEMSRARRGLLVLRELKRDPHRIVA 752


>gi|227535107|ref|ZP_03965156.1| possible DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187248|gb|EEI67315.1| possible DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 814

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 211/760 (27%), Positives = 368/760 (48%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F
Sbjct: 1   MANQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYT
Sbjct: 61  RKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP
Sbjct: 121 EARLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  A L L+ +P   ++ L++Y+ GPDFPTGG I++  + I ++Y  GRG   V
Sbjct: 181 PHNLREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGG-IIQGLDGIKQAYETGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R  +E +  G   IVVTEIPY V K+++I+KI EL I K++  + ++RDES      V
Sbjct: 240 RSRTHIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  ++    P+++ L  +L+ ++ HRR+V+
Sbjct: 300 VIELKKEADAHGILNYLFKNTDLQIAYNFNMVAIADM-QPKLLGLKAMLEAYVEHRRDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ F +     R  I++GL+     +D++IA IR          +   +F  +E Q +
Sbjct: 359 TRRTRFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKKFDFSEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +   
Sbjct: 419 AIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPAARDRVIEGELKRIAKEYGD- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                RR++  +             +  E + V +S  G+++     S    D +    K
Sbjct: 478 ----DRRSSI-QAKIETLEVATTVTVADETVMVQVSRDGYVKRSSLRSYQAVDPADNGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
             D         T   + +++  G     P         +  GE +   + L  ++ ++ 
Sbjct: 533 ANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKDTGEHLSQTVGLGSDEKVLA 592

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMKLVVKVTG 658
            F +D        ++ SS G       S++        K    +K+     +      T 
Sbjct: 593 VFAFDQLDGAGSFVLGSSDGYIKQTALSDLQPQRTYKSKPMMAMKLKDPAAIVTNAYFTT 652

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWID 713
           D    V VV  +   L F +  +  +  R  GV+    K D  + + I  K         
Sbjct: 653 DQQQDVFVVSRHAYGLTFPLSDVSTVGARATGVKSMDLKPDDEVVNFILVKDPTTAKVGI 712

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
              R   +           R   G LV +   R   + ++
Sbjct: 713 LTQRGAFKKMALSEVGEMSRARRGLLVLRELKRDPHRIVA 752


>gi|295836110|ref|ZP_06823043.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
 gi|197695204|gb|EDY42137.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
          Length = 822

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 225/764 (29%), Positives = 373/764 (48%), Gaps = 37/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                EE +  + +   ++  YL YA S I  RA+PD RDG KPV RRI++ M+EMGL  
Sbjct: 17  DEADFEERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRP 76

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++   D  A
Sbjct: 77  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPA 136

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+RM   A L+   +DE+ VDF   Y+ ++ EP+  P+ +PNLL NG SGIAVGM
Sbjct: 137 AMRYTESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGM 196

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++  HN+ E+  AA  LI  P   ++ L++++ GPD PTGG IV     I ++Y  GR
Sbjct: 197 ATNMAPHNLGEVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLGGIRDAYANGR 255

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F+ RA   VE V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +  
Sbjct: 256 GSFKTRATVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDR 315

Query: 308 D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +L 
Sbjct: 316 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKEMLEVYLD 374

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSL 423
           HR  V+ RRS FR      R+ +++GLL+A ++IDE+I +IR+ +            FSL
Sbjct: 375 HRFSVVRRRSEFRRTKRLNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEHFSL 434

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q   IL+  LR L K +  +++SE D L AE E++ ++L S  +    ++ E+  V 
Sbjct: 435 SETQTQYILDTPLRRLTKFDRLELESERDRLNAEIEELTAILESDAELRKLVSSELAAVA 494

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS-VDLSA 542
           +          RRT   E + +  A      +  +P  V++S+ G I        +   +
Sbjct: 495 KKHGTP-----RRTVLLESADSPVAA-IPLQVADDPCRVLLSSTGVIARTPGTEPLQEGS 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG-------HGEAIQLLID 595
               + D ++ A+ A     +  +++ G+   L   +L             G  +   + 
Sbjct: 549 AKRAKHDVIRSAVPATARGEVGAVTSAGRLLRLTVVDLPQLAEGAGPALVGGAPVAEFLR 608

Query: 596 LNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           L  ++ +V     D +   L + +++G    V   +  AN  +    + +   +++    
Sbjct: 609 LEGDETLVCLCTLDESSPGLALGTAQGVVKRV-VPDYPANREE-LEVITLREGDRIVGAA 666

Query: 655 --KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI----------SDVI 701
             +   + +  + ++ +LL F    +    R   GV      +G             D  
Sbjct: 667 ELRTGEEDLVFITDDAQLLRFPASAVRAQGRPAGGVAGVKLTEGAKVLSFDVVDPAVDAA 726

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            F +      +D + ++  +           R   G    +   
Sbjct: 727 VFTVAGSRGTLDDSVQTTAKLTPFDQFPRKGRATGGVRCQRFLK 770


>gi|251782579|ref|YP_002996882.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391209|dbj|BAH81668.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 819

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/747 (28%), Positives = 383/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+  +EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPKARLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  
Sbjct: 301 ELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIE 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+++     S +   L  +  ++ 
Sbjct: 478 ----RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT+ +LL +T G     P   L   R       L   +++          
Sbjct: 534 DELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
           D          L V+  G     E  E+        K   ++K+   ++++  +  +  +
Sbjct: 594 DIVTSFDQGLYLAVTQNGFTKRFERQELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVME 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V  +   L FS   +P    +  GV+  + K+     V  F +    ++     R 
Sbjct: 654 DLLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLKNEDKL-VSAFSVTSN-SFFVLTQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 SLKRMAVDDIPQTSRANRGLLVLRELK 738


>gi|296313795|ref|ZP_06863736.1| DNA topoisomerase IV, A subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296839618|gb|EFH23556.1| DNA topoisomerase IV, A subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 767

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 266/767 (34%), Positives = 405/767 (52%), Gaps = 43/767 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQPHAPHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPIVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQ 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL
Sbjct: 421 VIRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +   ++   I  E++   + F  +     RRT   E  RA            EPIT+++S
Sbjct: 481 SDENEKRKLIIKEMQADMKQFGDA-----RRTLVEEAGRAVL----TQTTADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   
Sbjct: 592 DGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTTD 651

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   V V           +       + L F I ++  M++GKG+++     G   
Sbjct: 652 SGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESL 711

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
                     +       R          + L     KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRIPVSLLE---AKRGKKGRLLP 755


>gi|332522736|ref|ZP_08398988.1| DNA topoisomerase IV, A subunit [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314000|gb|EGJ26985.1| DNA topoisomerase IV, A subunit [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 836

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 204/747 (27%), Positives = 379/747 (50%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M + G  F   F+K
Sbjct: 18  SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMYKDGNTFEKGFRK 77

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 78  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 137

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +LQ ++++ V F   +++ + EP V P+ +PNLL NG +GI+ G AT IP H
Sbjct: 138 RLSEISGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAYPNLLVNGATGISAGYATDIPPH 197

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + LID+P+  ++KL+E++ GPDFPTG  I++ ++ I ++Y  G+G   VR+
Sbjct: 198 NLAEVIDATVYLIDHPKAKLDKLMEFLPGPDFPTGS-IIQGQDEIRKAYETGKGRVVVRS 256

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE+  G   I+VTEIPY++ KS L++KI ++ +  ++P + ++RDES      +  
Sbjct: 257 KTDIEELKGGKQQIIVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRSGLRIAI 316

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P  + +  IL  ++AHR+ ++  
Sbjct: 317 ELKKDADTQTVLNYLLKYTDLQVNYNFNMVAID-NYTPHQVGIQKILSSYIAHRKSIIIE 375

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F M   ++R+ I++GL+     +DE+IA+IR  +     K  +   ++ TE Q +AI
Sbjct: 376 RSKFDMAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYAFTEEQAEAI 435

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E + L      + +++      +N +  E+REVK+ F     
Sbjct: 436 VTLQLYRLTNTDIVTLQNEEEELRNLITTLGAIIADEATMYNVMKRELREVKKKFGNP-- 493

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+I+     S +   +  +  ++ 
Sbjct: 494 ----RRSQLQKETETIEIDTASLIVEEETFVSLTQGGYIKRTSPRSFNASTIEEVGKRDD 549

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L    +A TT  +L+ +  G     P   L   R           + +  + + ++ A
Sbjct: 550 DRLIFVTNAKTTQHLLIFTDLGNVIYRPVHELQDIRWKEVGEHLSQTITNYGNEEKVLYA 609

Query: 606 FVYDSTCKLLV--VSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGD 659
            + D    +    V+  G       +E+        K   + K+   ++++  V  +  +
Sbjct: 610 ELVDDFKSVTYYSVTQLGQIKRFARAELAPWRTYRSKSLKYAKLKNEQDRIIAVQPILFE 669

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + ++      L FS +++P    +  GV+  + K G           +    +    R 
Sbjct: 670 DIMLISHQGYALRFSNEEVPVQGLKTAGVKAMNLKKGDYITSAFLAYTDSFFVL--TQRG 727

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 728 SLKRVATEDIPQTSRANRGLLVLRELK 754


>gi|323127402|gb|ADX24699.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 819

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 380/747 (50%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  
Sbjct: 301 ELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIE 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+++     S +   L  +  ++ 
Sbjct: 478 ----RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT+ +LL +T G     P   L   R       L   +++          
Sbjct: 534 DELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
           D          L V+  G     E  E+        K   ++K+   ++++  +  +  +
Sbjct: 594 DIVTSFDQGLYLAVTQNGFTKRFERQELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVME 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V  +   L FS   +P    +  GV+  + K+                 +    R 
Sbjct: 654 DLLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLKNEDKLVSTFSVTSNSFFVL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 SLKRMAVDDIPQTSRANRGLLVLRELK 738


>gi|260583814|ref|ZP_05851562.1| DNA topoisomerase IV, A subunit [Granulicatella elegans ATCC
           700633]
 gi|260158440|gb|EEW93508.1| DNA topoisomerase IV, A subunit [Granulicatella elegans ATCC
           700633]
          Length = 818

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 208/765 (27%), Positives = 393/765 (51%), Gaps = 35/765 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++++++ ++L   + +R+  Y+   I++RA+PD+RDG KPV RRI++AM   G      F
Sbjct: 3   MQQDIQELNLEDVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMFVEGNTSEKQF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKLRDVLVEMHGNNGSMDGDPAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++E +L+ +D+  VDF   +++ + EP V P++FPNLL NG +GI+ G AT IP
Sbjct: 123 EARLSKISEELLRDLDKKTVDFVLNFDDTEEEPTVLPARFPNLLVNGATGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+ +A +  ID+P+ ++++L++++ GPDFPTG  I++  + + ++Y  G+G   V
Sbjct: 183 THNLGEVIDATIHTIDHPKATVKELMQFVKGPDFPTGA-IIQGIDELEQAYETGKGKVVV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +E +  G   IVVTEIPY+V K+ L++KI E+ + K+I  + ++RDES      +
Sbjct: 242 RSKTSIEAIKGGKSQIVVTEIPYEVNKALLVKKIDEIRLNKKIEGIAEVRDESDRTGLQI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  + + ++  +   ++++  +  NM  +   R P  + L  IL  ++AH++EV+
Sbjct: 302 VIELKKEANAEGILNYLLKNTELQINYNFNMVAID-ARRPMQVGLKKILDSYIAHQKEVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            +R+ F +     R+ I+ GL+ A   +DE+IA+IRN +     K  +V  +  T  Q +
Sbjct: 361 TKRTQFDLNKAQDRLHIVDGLMKALSILDEVIALIRNSNDKKDAKEKLVETYDFTMTQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E  +L      + S+L S K     +  E+RE+K+ ++  
Sbjct: 421 AIVSLQLYRLTNTDITILQEEKLDLNERVATLTSILKSEKTLLQVMKQELRELKKKYATP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T  +    +     + +I +E + VV + +G+ + +   S           +
Sbjct: 481 ------RLTEIQAEIKEIKIETEILIPEEEVYVVATKQGYYKRVSPRSFASSAPEENGLR 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           EGD + +     T D ++L ++ G    LP   +     +  G  +   I L  N+ I+ 
Sbjct: 535 EGDEVLLVQKVSTLDSLVLFTSKGNYLHLPVHEIPEAKWKDVGHHLSQSISLATNEIILA 594

Query: 605 AFVYDSTCK-------LLVVSSKGNAFIVEESEIIANT---RKGKTFLKVS-SEEKMKLV 653
             V +           ++  + +G       +E         +    +K+  + +++  +
Sbjct: 595 GMVKEKDSNDAYQDWTVVFFTKEGLVKQTAMNEFNTYRGYKTRTSNAIKLKTATDEVVAI 654

Query: 654 VKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
             V      + +V      L + + ++P +     GV+  + +             E   
Sbjct: 655 ELVPNQEQEIFIVTHCGFGLRYELSEVPVVGTVASGVKAINLRKDDFVAGAMVYSPESKV 714

Query: 711 W--IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFL 751
                +  R   +  N L   +  R   G +V +   ++   + +
Sbjct: 715 VSAFLATQRGSVKRFNVLEVSMLTRAKRGLMVLREL-KNNPHRVV 758


>gi|116494895|ref|YP_806629.1| DNA topoisomerase IV subunit A [Lactobacillus casei ATCC 334]
 gi|116105045|gb|ABJ70187.1| DNA topoisomerase IV subunit A [Lactobacillus casei ATCC 334]
          Length = 814

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 211/760 (27%), Positives = 368/760 (48%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F
Sbjct: 1   MANQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYT
Sbjct: 61  RKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP
Sbjct: 121 EARLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  A L L+ +P   ++ L++Y+ GPDFPTGG I++  + I ++Y  GRG   V
Sbjct: 181 PHNLREVIAAVLYLLKHPTADLDTLMQYVKGPDFPTGG-IIQGLDGIKQAYETGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R  +E +  G   IVVTEIPY V K+++I+KI EL I K++  + ++RDES      V
Sbjct: 240 RSRTHIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  ++    P+++ L  +L+ ++ HRR+V+
Sbjct: 300 VIELKKEADAHGILNYLFKNTDLQIAYNFNMVAIADM-QPKLLGLKAMLEAYVEHRRDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ F +     R  I++GL+     +D++IA IR          +   +F  +E Q +
Sbjct: 359 TRRTRFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKKFDFSEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +   
Sbjct: 419 AIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPAARDRVIEGELKRIAKEYGD- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                RR++  +             +  E + V +S  G+++     S    D +    K
Sbjct: 478 ----DRRSSI-QAKIETLEVATTVTVADETVMVQVSRDGYVKRSSLRSYQAVDPADNGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
             D         T   + +++  G     P         +  GE +   + L  ++ ++ 
Sbjct: 533 ANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKDTGEHLSQTVGLGTDEKVLA 592

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMKLVVKVTG 658
            F +D        ++ SS G       S++        K    +K+     +      T 
Sbjct: 593 VFAFDQLDGAGSFVLGSSDGYIKQTALSDLQPQRTYKSKPMMAMKLKDPAAIVTNAYFTT 652

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWID 713
           D    V VV  +   L F +  +  +  R  GV+    K D  + + I  K         
Sbjct: 653 DQQQDVFVVSRHAYGLTFPLSDVSTVGARATGVKSMDLKPDDEVVNFILVKDPTTAKVGI 712

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
              R   +           R   G LV +   R   + ++
Sbjct: 713 LTQRGAFKKMALSEVGEMSRARRGLLVLRELKRDPHRIVA 752


>gi|256965076|ref|ZP_05569247.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704]
 gi|256955572|gb|EEU72204.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704]
          Length = 820

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 212/754 (28%), Positives = 389/754 (51%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ ++++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +       ++ +E + V +++ G+I+     S   S          
Sbjct: 481 ----RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 552 KIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
              L+A   +T D +LL++  G     P   L   R           +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++         +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750


>gi|156888557|gb|ABU96683.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 380/747 (50%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  
Sbjct: 301 ELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIE 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+++     S +   L  +  ++ 
Sbjct: 478 ----RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT+ +LL +T G     P   L   R       L   +++          
Sbjct: 534 DELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
           D          L V+  G     E  E+        K   ++K+   ++++  +  +  +
Sbjct: 594 DIVTSFDQGLYLAVTQNGFTKRFERQELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVME 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V  +   L FS   +P    +  GV+  + K+                 +    R 
Sbjct: 654 DLLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLKNEDKLVSTFSVTSNSFFVL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 SLKRMAVDDIPQTSRANRGLLVLRELK 738


>gi|262277165|ref|ZP_06054958.1| DNA gyrase subunit A [alpha proteobacterium HIMB114]
 gi|262224268|gb|EEY74727.1| DNA gyrase subunit A [alpha proteobacterium HIMB114]
          Length = 746

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 313/736 (42%), Positives = 460/736 (62%), Gaps = 15/736 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+    L+    ++YLAYALSTI +RA+PD+RDG KPVHRR+I+AM  + L   + F
Sbjct: 1   MSKNIVKDELQNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMYLLNLSPKSQF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGDQSVYD+LVRLAQ F   YPL++GQGNFGN+DGD+AAA RYT
Sbjct: 61  KKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTHYPLVNGQGNFGNVDGDNAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++T+ +E +L  ++E+ V+F+ TY+ E  EP + PS+FPN+LANG+SGIAVGMATSIP
Sbjct: 121 ETKLTKTSEYLLADIEEETVNFKKTYDGELDEPEILPSQFPNILANGSSGIAVGMATSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HNVQEICEA + L DNP  SI+ LL++I GPDFPTGGI+ E ++ I ++Y+ GRG F +
Sbjct: 181 PHNVQEICEALIYLNDNPNCSIKDLLKFIKGPDFPTGGILNEDKKEIFKAYKTGRGFFEI 240

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           ++++ VE++GRG + I VTEIPY V KS+LIEK+A +II K+  LL+ + DES E +RIV
Sbjct: 241 KSKYKVEDLGRGLYQIAVTEIPYSVNKSKLIEKLAGIIINKKNKLLDHVSDESDEKIRIV 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L PKNR+++P+ LM S+F  S+++ +  LNMNVL+    P+VM L  ILK  L HR  +L
Sbjct: 301 LRPKNRNVNPEDLMNSLFEQSELKNKIFLNMNVLNEKNEPKVMNLKEILKSLLKHRYIIL 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
             + +F+++ I RR+EILKG +I Y N+++II IIRN   PK  ++ ++  T  QVD+IL
Sbjct: 361 NNKINFKLKKIKRRLEILKGFIIVYKNLNQIIKIIRNSKDPKKELIKKYKFTLIQVDSIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLR+L+K+EE  IK E  NL  EK+++  +LNS   Q  +I  E  EV   F  ++  
Sbjct: 421 EMRLRNLKKIEELDIKKEFKNLELEKKRLSKILNSKTLQRKEINNEYTEVINEFGDNSTY 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           G RR+   +  +     L+  +   E I V + N  +++S K           K  D + 
Sbjct: 481 GPRRSILEKFVKFTDDELESKLEVIENINVSLINEKFLKSKK----GTYKRSEKNSDDVS 536

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           + ++  T+D+I LLS  GK+Y L   NL  G   G  I   + L   + IV  FVY    
Sbjct: 537 LIINCKTSDQICLLSNIGKSYILNCSNLKFGSTKGFLISSYLKLKDEEKIVDLFVYKEKQ 596

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGENR- 668
           ++++ S  G  F V+  ++  N + GK    +   ++      +  +    + +  ++  
Sbjct: 597 EIILSSQNGYGFFVKSEDLFTNKKSGKKIFNIKKNDQFYGSCLINKEKDKFIVLFLKDNL 656

Query: 669 --KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
             KL+IF + ++P + +G GV L   K   +++       + L+ ID   +       +L
Sbjct: 657 KYKLIIFELKEVPYLQKGSGVILFKTKGFKLNNFCSI--DDNLSLIDIDSK--KIELGNL 712

Query: 727 LGWLGKRGGVGSLVPK 742
             +L KRG  G  V K
Sbjct: 713 KSFLSKRGKSG-KVIK 727


>gi|163783052|ref|ZP_02178047.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881732|gb|EDP75241.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 781

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 378/719 (52%), Gaps = 38/719 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RAIPD+RDG KPV RRI++AM EMGL     FKKSAR+VGEV+GK
Sbjct: 12  VKQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMGLMPEKPFKKSARVVGEVLGK 71

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQ+VYD+LVR+AQ F  RYPLI GQGN+G++DGD  A  RYTEA++++VA  +L+
Sbjct: 72  FHPHGDQAVYDALVRMAQDFSMRYPLIIGQGNYGSVDGDPPAQMRYTEAKLSKVAVELLE 131

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF   ++E   EP V PSKFPNLL NGT+GIAVG+ATSIP HN++E+ +A + 
Sbjct: 132 DIDKDTVDFIPNFDESLMEPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLREVGKALVE 191

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP +S E++LE + GPDFPTGG+I   ++ I E Y  GRG  +V+A+  VE+V  G 
Sbjct: 192 LAKNPNMSTEEILEIVKGPDFPTGGVIENYKD-IKEIYETGRGIVQVKAKAHVEKVQGGR 250

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V+EIPYQV K+ LI+KIA+ + + R+  + DIRDES +D   ++    R    + +
Sbjct: 251 EQIIVSEIPYQVNKAELIKKIADNVRSGRLKEISDIRDESDKDGIRIVIELKREAKGEKV 310

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           ++ +F  + +   FP+N+ VL     P+++ +  +L+E++ HR  ++ RR+ F ++  + 
Sbjct: 311 LKKLFKYTQLRKGFPVNLVVLI-NGEPKLVGIKELLREFIKHRLSIILRRTRFFLKKAED 369

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ +++GLLIA  N+DE+I  IR     +    ++ +RF LTE Q  A+L+LRL  L  L
Sbjct: 370 RLHVVQGLLIALNNLDEVIEGIRRSKDVQEAREMLQARFGLTERQAQAVLDLRLHRLTSL 429

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +++ E  +LL + E    ++ S +++      E   + + F                
Sbjct: 430 ERDKLRQEEADLLQKIEYYRKVVGSEEERIKIFVEETENLVKKFGDPRRTFIEGIEEKIE 489

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
             +    + +                         V       +    +   L    T+ 
Sbjct: 490 EGSLVVAVLEN----------------------GKVMPVENMPEGESPVVDILDVPFTEG 527

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKG 621
           + L+S  G+ Y L     L G                + IV AF+ +    +LL+ +  G
Sbjct: 528 LFLVSNRGRVYWLAGSQALQGSKVNFK-------ESEEYIVGAFIRERFADRLLLATRNG 580

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK-VTGDHVAVVGENRKLLIFSIDQIP- 679
               +   E     + G   +K++ ++++  + + +    + +     K+  FSI +IP 
Sbjct: 581 MIKKIPLVEFEYKAQ-GMRIIKLAEDDEVVGIAQSIDMSDILMFTRRGKVARFSIREIPA 639

Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
                KG +    +D            +    I        +        +  RG  G 
Sbjct: 640 ATPGTKGAQGIKVEDNDEVAGARVIREDQPYIIVVTVDGKVKRIYQQEIGVRNRGVKGV 698



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 50/155 (32%), Gaps = 12/155 (7%)

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
           +V       T  L +VS++G  + +  S+ +  ++     +     E+  +   +     
Sbjct: 516 VVDILDVPFTEGLFLVSNRGRVYWLAGSQALQGSK-----VNFKESEEYIVGAFIRERFA 570

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           D + +   N  +    + +  E  + +G+R+    +      I   I +    +    R 
Sbjct: 571 DRLLLATRNGMIKKIPLVEF-EY-KAQGMRIIKLAEDDEVVGIAQSI-DMSDILMFTRRG 627

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +         G  G+   K    + +   +
Sbjct: 628 KVARFSIREIPAATPGTKGAQGIKV-EDNDEVAGA 661


>gi|309378367|emb|CBX23013.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 767

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 265/767 (34%), Positives = 404/767 (52%), Gaps = 43/767 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQPHASHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EPV  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPVHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQ 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  ++  F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL
Sbjct: 421 VIRESDDPKADLMEAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   +  E++   + +  +     RRT   E  RA            EPIT+++S
Sbjct: 481 GDENEKRKLMIKEMQADMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  +  LI+L +    V           L+ SS G  FI + ++++   + GK  +   
Sbjct: 592 DGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTAD 651

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   V V           +       + L F I ++  M++GKG+++     G   
Sbjct: 652 SGETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIGELKIMAKGKGLQIIGLNTGESM 711

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
                     +       R          + L     KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRIPVSLLE---AKRGKKGRLLP 755


>gi|225023611|ref|ZP_03712803.1| hypothetical protein EIKCOROL_00471 [Eikenella corrodens ATCC
           23834]
 gi|224943493|gb|EEG24702.1| hypothetical protein EIKCOROL_00471 [Eikenella corrodens ATCC
           23834]
          Length = 770

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 264/763 (34%), Positives = 407/763 (53%), Gaps = 43/763 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            NT   E+   + L    E  YL YA+S +K RA+PD+ DG KPV RRI+ AM EMGL  
Sbjct: 3   ENTASAEHSDILLLAPYAERAYLEYAMSVVKGRALPDVGDGQKPVQRRILFAMKEMGLAA 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            +   KSAR+VGE++GK HPHGD S YD++VR+AQ F  RYPLI G GNFG+ DGD AAA
Sbjct: 63  NSKPVKSARVVGEILGKYHPHGDASAYDAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+T +AEL+L  + +  VDF   Y+    EPV  P++ P +L NG SGIAVGMA
Sbjct: 123 MRYTEARLTPIAELLLSELHQGTVDFVPNYDGAFEEPVALPARLPMVLLNGASGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+  AA+AL+  P ++  +L+E+   PDF  GG I+   + +++ Y  G+G
Sbjct: 183 TEIPPHNLGEVTAAAVALLKKPTLTTAELMEHTPAPDFAGGGHIITPAKDLLQLYETGKG 242

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL----------- 297
             RVRAR+ +E++ RG W +V+TE+P      +++ +I E    K               
Sbjct: 243 SIRVRARYEIEKLARGQWRLVITELPPNTSAQKILAEIEEQTNPKPKSGKKQLNQDQLNT 302

Query: 298 -------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
                  ++ +RDES     VR+V  PK+  ++PD  + ++   + +E   P N+ ++ +
Sbjct: 303 KKLMLELIDKVRDESDGEHPVRLVFEPKSSRIEPDNFINTLMAQTGLEGNVPANLVMIGL 362

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
              P    L  IL+EWL  R   + RR   R++ + +R+ IL G + A+L+IDE+I +IR
Sbjct: 363 DNRPAQKNLKTILQEWLDFRVSTVTRRLQHRLEQVLKRIHILDGRMTAFLHIDEVIRVIR 422

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
             D+PKP +++ F L+E Q + IL +RLR L +LE ++++ EL +L  E+  + +LL   
Sbjct: 423 EADEPKPELMAAFGLSEIQAEDILEIRLRQLARLEGFKLEQELADLREEEGYLKNLLADE 482

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
             +   I  E++   + F        RRT   E  RA            EP+T+++S +G
Sbjct: 483 GAKKKLIIKEMQADAKQFGDP-----RRTLVAEAERAAL----THTTADEPVTLILSRQG 533

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           WIRS   H +DLSA  FKEGD L+  L   T D +++L T G++YT+    +  GRG G 
Sbjct: 534 WIRSRAGHGLDLSATAFKEGDELQQTLETRTVDPVVVLDTLGRSYTIDPAEIPGGRGDGV 593

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            +  L++L     ++           L+  S G  FI +  +++   + GK  +K+ + E
Sbjct: 594 PLASLLELQPGASVLAMLAGQPQEHYLLAGSGGYGFIAKLGDLVGRVKAGKEVVKLEAGE 653

Query: 649 KMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
            + +   V           + +    + LL F I ++  M++G+G++L S +      + 
Sbjct: 654 TLLMPQPVHQSALINPDCRLVLASAEKHLLAFPIGELKVMAKGRGLQLMSLRGNDTLQLT 713

Query: 702 CFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLV 740
                          R           D+    GKRG  G ++
Sbjct: 714 ALVSTPDFWVCSRGKRGAAHRERLRVQDIE---GKRGRKGRML 753


>gi|325265708|ref|ZP_08132397.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella denitrificans
           ATCC 33394]
 gi|324982839|gb|EGC18462.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella denitrificans
           ATCC 33394]
          Length = 761

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 255/749 (34%), Positives = 413/749 (55%), Gaps = 37/749 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L    E  YL YA+S +K RA+P ++DG KPV RRI++AM +MGL       KSAR+V
Sbjct: 8   LDLAAYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILYAMKDMGLVHNGKPVKSARVV 67

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR++ +
Sbjct: 68  GEILGKYHPHGDSSAYEAMVRMAQNFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLSPI 127

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  + +  VDF   Y+  + EPV+ P++ P +L NG SGIAVGMAT IPSHN+ EI
Sbjct: 128 ADLLLSEIQQGTVDFVPNYDGAEKEPVLLPARLPMVLLNGASGIAVGMATEIPSHNLTEI 187

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +AA+AL+ NP ++   L+ Y+  PDF  GG I+   + + + Y  G+G  RVRAR+ ++
Sbjct: 188 TQAAIALLKNPNLNTADLMAYVPAPDFAGGGHIITPAKDVRQIYETGKGSLRVRARYEID 247

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDI 301
           ++ RG W ++V+E+P     ++++ +I E    K                      +E +
Sbjct: 248 KMARGQWRVIVSELPPNTSSAKILAEIEEQTNPKPKAGKKQLSQDQINTKKLMLDLIEKV 307

Query: 302 RDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RD+S     VR++  PK+  ++P   + ++   + +E    +N+ ++     P    L  
Sbjct: 308 RDDSDGEHPVRLIFEPKSSRIEPQHFVNTLMAQTGLEGNVSVNLVMMGADNRPAQKNLKT 367

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL+EWL +R   + RR   R+ A++RR+ IL G LIA+L+IDE+I +IR  D+PK  +++
Sbjct: 368 ILQEWLDYRVATVTRRLQHRLNAVERRIHILDGRLIAFLHIDEVIRVIREADEPKADLMA 427

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            FSL+E Q + IL +RLR L +LE  ++++EL+ L  E+  + +LL     +   I  E+
Sbjct: 428 NFSLSEIQAEDILEIRLRQLARLEGIKLENELNELREEQSSLHTLLGDENAKKKHIIKEM 487

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +   + F  +     RRT       A +          EP+T+++S +GWIR+   H VD
Sbjct: 488 QADAKQFGDA-----RRTLV----EAAERATLTQTTADEPVTLILSQKGWIRARSGHDVD 538

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           ++   FKEGD L+  L A T   +++L   G++YT+   ++  GRG G  +  LID+  N
Sbjct: 539 IAQTVFKEGDGLQQILPARTVQPVIVLDDSGRSYTINPADIPKGRGDGVPLASLIDMPAN 598

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----- 654
             IV+    +     L+ +S G  FI +   + +  + GKT + + + E +   V     
Sbjct: 599 AQIVSMLTGEPEDHYLLANSGGYGFICKLEHLHSRLKAGKTVMTLDNGETVLPPVCVHLS 658

Query: 655 -KVTGD-HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
             +  D  + +   + +LL F + ++  M++G+G+++ S ++G     +           
Sbjct: 659 SLINPDCKIMLATAHNRLLAFPLGEMKIMAKGRGLQMISLQEGDRVQRLNVLSSADYRLT 718

Query: 713 DSAGRSYNRSEND-LLGWLGKRGGVGSLV 740
               R     E   +     KRG  G ++
Sbjct: 719 IVGKRGGISHETLHIADITQKRGRKGKIL 747


>gi|239631505|ref|ZP_04674536.1| DNA topoisomerase IV subunit A [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525970|gb|EEQ64971.1| DNA topoisomerase IV subunit A [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 814

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 211/760 (27%), Positives = 368/760 (48%), Gaps = 28/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F
Sbjct: 1   MANQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYT
Sbjct: 61  RKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP
Sbjct: 121 EARLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  A L L+ +P   ++ L++Y+ GPDFPTGG I++  + I ++Y  GRG   V
Sbjct: 181 PHNLREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGG-IIQGLDGIKQAYETGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R  +E +  G   IVVTEIPY V K+++I+KI EL I K++  + ++RDES      V
Sbjct: 240 RSRTHIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  ++    P+++ L  +L+ ++ HRR+V+
Sbjct: 300 VIELKKEADAHGILNYLFKNTDLQIAYNFNMVAIADM-QPKLLGLKAMLEAYVEHRRDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ F +     R  I++GL+     +D++IA IR          +   +F  +E Q +
Sbjct: 359 TRRTRFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKKFDFSEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +   
Sbjct: 419 AIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPAARDRVIEGELKRIAKEYGD- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                RR++  +             +  E + V +S  G+++     S    D +    K
Sbjct: 478 ----DRRSSI-QAKIETLEVATTVTVADETVMVQVSRDGYVKRSSLRSYQAVDPADNGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
             D         T   + +++  G     P         +  GE +   + L  ++ ++ 
Sbjct: 533 ANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKDTGEHLSQTVGLGTDEKVLA 592

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMKLVVKVTG 658
            F +D        ++ SS G       S++        K    +K+     +      T 
Sbjct: 593 VFAFDQLDGAGSFVLGSSDGYIKQTALSDLQPQRTYKSKPMMAMKLKDPAAIVTNAYFTT 652

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWID 713
           D    V VV  +   L F +  +  +  R  GV+    K D  + + I  K         
Sbjct: 653 DQQQDVFVVSRHAYGLTFPLSDVSTVGARATGVKSMDLKPDDEVVNFILVKDPTTAKVGI 712

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
              R   +           R   G LV +   R   + ++
Sbjct: 713 LTQRGAFKKMALSEVGEMSRARRGLLVLRELKRDPHRIVA 752


>gi|319937327|ref|ZP_08011734.1| DNA topoisomerase IV subunit A [Coprobacillus sp. 29_1]
 gi|319807693|gb|EFW04286.1| DNA topoisomerase IV subunit A [Coprobacillus sp. 29_1]
          Length = 885

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 209/749 (27%), Positives = 382/749 (51%), Gaps = 24/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +   SL   + +R+  Y+   I++RA+PD+RDG KPV RRI++AM + G  +   +
Sbjct: 1   MSEKIITQSLDDIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYAMYKEGNTYNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG VIG  HPHGD SVYD++VRL+Q +  R PL+  QGN G+ID D AAA RYT
Sbjct: 61  RKSAKTVGNVIGNYHPHGDTSVYDAMVRLSQEWKMRIPLVDMQGNNGSIDNDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +D++ V     +++ + EP V P+K+PNLL NG +GI+ G AT IP
Sbjct: 121 EARLSAIAAELLKDIDKETVQMALNFDDTEYEPTVVPAKYPNLLVNGATGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+ +A +  + +P  S++KL+E++ GPDFPTG I+   ++ I  ++  GRG   V
Sbjct: 181 PHNLEEVIDATIYRLSHPHCSLDKLMEFMKGPDFPTGAIVE-GKQGIRTAFEKGRGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +         I+V+EIPY+V K+ L+ K+ E+   K +  + ++RDES  +   +
Sbjct: 240 RSKTEIIHEK-NMNKIIVSEIPYEVNKAELVRKLDEIRFNKSVDGIIEVRDESDRNGLSI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    + +D    +   F  +D++  +     V    + P  M ++ IL  ++ H+ EV+
Sbjct: 299 VIDLKKDVDVQNTLNYFFKNTDLQKNYNY-NMVAIKDKRPVCMGIEAILDGYIQHQIEVI 357

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVD 429
            +RS F +   + R  I+ GL+ A   +D+++  IR+    +     + ++F  TE Q +
Sbjct: 358 TKRSIFDLNKAEERKHIVDGLIKAVSILDDVVHTIRHSKDKQDAKINIQTQFGFTEKQSE 417

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E + L +  + ++ +LNS +     I  E++ +K+ +   
Sbjct: 418 AIVTLQLYRLTNTDIVSLEKEKEELESLIQTLNDILNSDQVLRKVIVDELKNIKKQYPSP 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T  +    +    ++AMI  E I V I+  G+I+ +   S    + +    K
Sbjct: 478 ------RLTEIKDEVQEIIINEEAMILPEDIYVSITQDGYIKRISQRSYKASENTLFGKK 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVT 604
           + D L     A+T D++L+ +  G    +P         +  G+ I  LI ++  + IV 
Sbjct: 532 DDDVLVDLHFANTLDKLLVFTDKGNYMYIPLHKLEEFKWKELGKHISYLIKVSPEEKIVG 591

Query: 605 ---AFVYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
                 +D    +++ S  G    VE  E       K    + +  ++ +  V    G  
Sbjct: 592 SVLVKSFDYPLYIILASRFGQMKRVELKEFDVTRFTKPMKCINLKKDDSLLQVGLSDGQQ 651

Query: 661 -VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +  +     ++S  +I  +  +  G++  + K+  +  +  F      ++I  + + 
Sbjct: 652 GIVLTTQAGYATLYSEQEISVLGVKAGGIKGINLKNDELIAMNIFNPLRTDSFILISDQP 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
             +           R   G+L+ K  P++
Sbjct: 712 GIKRLRISDIPSCNRATKGNLIFK-SPKT 739


>gi|271968324|ref|YP_003342520.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270511499|gb|ACZ89777.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 831

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 227/763 (29%), Positives = 382/763 (50%), Gaps = 36/763 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++   EE +  + +   +   +L YA S I +RA+PD RDG KPV RRI+++MSEMGL  
Sbjct: 10  TDEDFEERIVDIDVSAEMRTSFLEYAYSVIYQRALPDARDGLKPVQRRILYSMSEMGLRP 69

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
                KS+R+VG+V+GKLHPHGD ++YD+LVR+AQPF  R PLI G GNFG+ D D  AA
Sbjct: 70  DRGHVKSSRVVGDVMGKLHPHGDTAIYDALVRMAQPFSMRLPLIDGHGNFGSPD-DLPAA 128

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  ++Q +DED VDF+  Y+ +++EP V PS FPNLL NG +GIAVGMA
Sbjct: 129 MRYTEARLAAAAMAMVQSIDEDTVDFKPNYDGQETEPTVMPSAFPNLLVNGATGIAVGMA 188

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++  HN+ E+  AA  LI  P+ +++ L+ ++ GPD PTGG I+   + I ++Y  GRG
Sbjct: 189 TNMAPHNLVEVVAAARHLIKKPDATLDDLMRFVPGPDLPTGGTII-GLDGIRDAYAKGRG 247

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
            FR+RA+  VE+V      I+VTE+P+ V   R++ KI EL+ AK++  + D++D S   
Sbjct: 248 TFRMRAKCSVEQVSPRRKGIIVTELPFNVGPERVVTKIRELVTAKKLQGISDLKDLSDRH 307

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++        P+ ++E ++ L+ ME  F +N   L     P+ + L  +L+ ++ H
Sbjct: 308 KGLNLVIEIKNGFIPEAVLEELYRLTPMEETFGINNVALV-EGQPRTLGLRELLQVYVDH 366

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLT 424
           R +V+ RRS++R +  + R+ +++GL+IA LNIDE+I +IR+ D     +  ++  F L+
Sbjct: 367 RLDVVRRRSAYRRRKREDRLHLVEGLIIALLNIDEVIQVIRSSDDSAQARERLMEVFELS 426

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+  LR L + ++ ++  E + L +E  ++ ++L+S  +    ++ E+ +V +
Sbjct: 427 EIQAAYILDTPLRRLTRFDKLELDGEKETLESEIAELTAILSSEDKLRKVVSDELAQVSK 486

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            F        RRT   E S   +       +  +P  V+ S+ G +      S       
Sbjct: 487 TFGTP-----RRTVLLESSGVTRNASVPLEVADDPCLVLFSSTGLLARTTDASPLAGEGD 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--------AIQLLIDL 596
               D L   +++     + +++  G+   +   +L +               +   + L
Sbjct: 542 RSAHDVLVSVVNSTVRGEVGVVTNQGRMIRVQVVDLPTLPPSANPPSLSGGHPVSEYVTL 601

Query: 597 NHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV- 654
           +  + +V     D     L + +++G    V   +  AN R     + +   + +   V 
Sbjct: 602 SPGETVVGIGSLDPDGPGLALGTAQGVVKRV-VPDYPAN-RDDFEVIGLKDGDTVVGAVE 659

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTW 711
             + DH +  +    +LL +    +    R   G+       G  +              
Sbjct: 660 LTSEDHDLVFITSEAQLLRYPAVNVRPQGRPAGGMAGVRLDGGATVIWFGVVDPARESRV 719

Query: 712 IDSAGR---------SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           +  AG             +  +        R   G  V +   
Sbjct: 720 VTIAGSSTALPGTQIGGAKISDYAEYPAKGRATGGVRVQRFLK 762


>gi|42519097|ref|NP_965027.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii NCC 533]
 gi|41583384|gb|AAS08993.1| topoisomerase IV subunit A [Lactobacillus johnsonii NCC 533]
          Length = 826

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 213/757 (28%), Positives = 382/757 (50%), Gaps = 30/757 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +  
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EAA+ L+ +P+ + + L++++ GPDFPTGGI++   + I E+Y  GRG  
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVL-GTKGIKEAYETGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VR++  ++E+      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+     
Sbjct: 241 QVRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +LAH+++
Sbjct: 301 SIVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAID-RMTPVQVGLKRILSSYLAHKKD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQ 427
           V+ +R+ F ++   +R+EI++GL+ A   +D++I  IR+    K    +   ++  T NQ
Sbjct: 360 VVTKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAKYDFTPNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +  Q+K E  +L  + EK + +L+  K     +  E+  VK  F 
Sbjct: 420 AEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNKVLERVVVKELNAVKREFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
                   R T      A     ++A++  E + V++S  G+++     S    D     
Sbjct: 480 SP------RRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSLRSFQSTDDEDNG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDI 602
              GD +       T D + + +  G     P         +  G+ +   I L+ +++I
Sbjct: 534 LPAGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEEI 593

Query: 603 VTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE----KMKL 652
           +  F  +        L+ ++ G    V  +++        +  T +K+ S +    ++  
Sbjct: 594 IRVFEVNDLKANLNFLIATNDGYIKQVTLADLQPTRTYKSRAITAIKLKSNDSKVVRIDQ 653

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTW 711
           V   +   + ++      + F I +IP    +  GV+  + KD            + +  
Sbjct: 654 VQPDSKQEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKDDDYIVNYVLADPKYIDL 713

Query: 712 I---DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           I       R   +     L     R   G LV +   
Sbjct: 714 IKIGIITQRGAFKQLKLSLINKVTRAKRGVLVLRELK 750


>gi|116670188|ref|YP_831121.1| DNA topoisomerase IV subunit A [Arthrobacter sp. FB24]
 gi|116610297|gb|ABK03021.1| DNA topoisomerase IV subunit A [Arthrobacter sp. FB24]
          Length = 832

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 229/771 (29%), Positives = 366/771 (47%), Gaps = 52/771 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MSEMGL       K
Sbjct: 19  ENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLRPDRGHVK 78

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D D  AA RYTEA
Sbjct: 79  SARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAPRYTEA 137

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  +   +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAVGMAT++  H
Sbjct: 138 RLAAAALSLTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMATNMAPH 197

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  LI NPE ++E L+ ++ GPD PTGG IV   + I ++Y  GRG F+ RA
Sbjct: 198 NLVEVISAARHLIANPEATLEDLMRFVPGPDLPTGGRIV-GLDGIRDAYATGRGSFKTRA 256

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313
           +  VE++      +VVTE+PY V   ++IEKI + +  K++  + DI D +       ++
Sbjct: 257 KVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNGKKLTGISDIVDLTDRKHGLRLV 316

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                  +P+ +++ ++  S ME  F +N   L     PQ + L  +L  ++ HR  V+ 
Sbjct: 317 IELKNGFNPNAVLQQLYRYSPMEDSFGINNVTLVD-GQPQTLGLVQLLSVYVDHRINVVR 375

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR++FR++    R+ +++GLLIA ++IDE+I IIR+ D+    +  ++S + LTE Q + 
Sbjct: 376 RRTAFRLEKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEVSAARERLMSIYDLTEIQANY 435

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L K    +++ E D L  E  +++++L S ++    ++ E+ E+ E +    
Sbjct: 436 ILELRLRQLTKYSRIELEKEQDQLKREIAELEAILGSDQRLRELVSDELGEIAEKYGTP- 494

Query: 491 DLGRRRTTFCEVSRADKAT--------------LQQAMIEKEPITVVISNRGWIRSLKSH 536
               RRT   E                           I  +P   +++  G I    + 
Sbjct: 495 ----RRTVLLESEAVSPTVAALAAARGGKGKAAPLALEIADDPCWAILTASGQIARTSNQ 550

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--------E 588
                +    + D  +  +       I  +++ G+   L   ++                
Sbjct: 551 EPLTESGPRSKHDVFRSVVKTSARGEIAAVTSLGRMLRLQVMDMPVLPPMSGLPNLAGGV 610

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
             +  I L   + +V     D    L + +++G    V+        R+    + +  ++
Sbjct: 611 PAKDFITLLKGETLVAFAPLD--TVLAIGTAQGIVKRVQPD--YPLNREDWEVIALKDKD 666

Query: 649 KMKLVVKVTGDHV--AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV--ICF 703
            +  V     D V    +    +LL FS   +    R   G+       G          
Sbjct: 667 TVVGVEPAGADDVDLVFLTRQAQLLRFSAANVRPQGRTAGGMAGIKLGAGDQVLFFGTVA 726

Query: 704 KICEGLTWIDSAGR---------SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              E    +  +G             +           R   G    +   
Sbjct: 727 PGDEDAVVVTVSGTEGALPGTAPGAGKVTAFAEYPPKGRATAGVRAHRFLK 777


>gi|329119989|ref|ZP_08248661.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327463902|gb|EGF10216.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 798

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 266/776 (34%), Positives = 404/776 (52%), Gaps = 47/776 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     V      + L    E  YL YA+S +K RA+P++ DG KPV RRI++AM +MG
Sbjct: 32  MSQETPSVLSENDTLILGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILYAMRDMG 91

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 92  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 151

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  + +  VDF   Y+    EP + P++ P +L NG SGIAV
Sbjct: 152 AAAMRYTEARLTPIAELLLSEIHQGTVDFVPNYDGAFEEPAMLPARLPMVLLNGASGIAV 211

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP HN+ E+ +AA+AL+  P +    L+E+I  PDF  GG I+     + + Y  
Sbjct: 212 GMATEIPPHNLGEVTQAAIALLKKPHLETADLMEFIPAPDFAGGGQIITPAADLRQIYET 271

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E + RG W ++VTE+P     ++++ +I E    K            
Sbjct: 272 GKGSVRVRARYEIERLARGQWRVIVTELPPNTNAAKILAEIEEQTNPKPKAGKKQLNQDQ 331

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+   D D  + ++   + +E    +N+ +
Sbjct: 332 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRTDTDAFINTLMAQTSLEGNVLMNLVM 391

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 392 MGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLSQVEKRLHILEGRLKVFLHIDEVIK 451

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL
Sbjct: 452 VIRESDDPKTDLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILL 511

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   I  E++   + +        RRT   E  RA            EP+T+++S
Sbjct: 512 GDENEKKKLIIKEMQADMKQYGDE-----RRTLVEEAGRAVL----TQTTADEPVTLILS 562

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L T G+ YTL A  +  GRG
Sbjct: 563 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVQPVIILDTLGRTYTLDAAEIPGGRG 622

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  +  LI+L +                L+  S G  FI + +++++  + GK  + + 
Sbjct: 623 DGVPVSSLIELQNGAKPAAMLTGVPEQHYLLAGSGGYGFIAKLADMVSRNKNGKVLMTLD 682

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           + E +   V V           V +     +LL F + ++  M +G+G++L    D    
Sbjct: 683 AGETVLPPVPVYASSLINPDCKVVLADSGNRLLAFPLGELKVMPKGRGLQLTPLSDDLRL 742

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           + I               R           D+    GKR   G    K    SG+ 
Sbjct: 743 EHIAVVSTPEFIVESVGKRGAAHQEKLRIQDIA---GKRSRKG----KVLELSGRL 791


>gi|167585849|ref|ZP_02378237.1| DNA topoisomerase IV, A subunit [Burkholderia ubonensis Bu]
          Length = 712

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 275/700 (39%), Positives = 408/700 (58%), Gaps = 32/700 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++L+L  +D+  VDF   Y+    EP + P + P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 SKLLLDEIDQGTVDFMPNYDGSFEEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P ++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPHLTHAELMGLIPGPDFPGGGQIISSDAEISTAYESGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------------------AKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPSTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES ++  VR+V  PK+R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKEAPVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLLT 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVKFRQLTMTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALMS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L+E Q + IL +RLR L +LE+ +I+ ELD L  EK K++ LL +       +  EI
Sbjct: 440 AFGLSERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT   +  RA      +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 EADAKQYGD-----DRRTLIQQEKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK GDSL  A    T DR++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PAGFSFKAGDSLYAAFQCRTPDRLIAWGSRGRVYSVDVAVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  F   +  +LL+ SS G  F+ +  ++++  + GK F+ +         + V   
Sbjct: 611 THLMHYFAASADQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDEGAAPLAPMPVLPN 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGG 696
              VA +    +LL+F +D++  +   G+GV L +  D  
Sbjct: 671 AKQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDDKE 710


>gi|304386981|ref|ZP_07369239.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria meningitidis
           ATCC 13091]
 gi|304338938|gb|EFM05034.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria meningitidis
           ATCC 13091]
          Length = 780

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 267/770 (34%), Positives = 409/770 (53%), Gaps = 49/770 (6%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N+       + N   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +M
Sbjct: 15  NMQPHAPHTDSN--TLMLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDM 72

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD
Sbjct: 73  GLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGD 132

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIA
Sbjct: 133 GAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIA 192

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y 
Sbjct: 193 VGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYE 252

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------- 297
            G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K           
Sbjct: 253 TGKGRVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQD 312

Query: 298 -----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
                      ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ 
Sbjct: 313 QLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLV 372

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           ++ +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I
Sbjct: 373 MMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVI 432

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
            +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ L
Sbjct: 433 KVIRESDDPKTDLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIL 492

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L+   ++   I  E++   + +  +     RRT   E  RA            EPIT+++
Sbjct: 493 LSDENEKRKLIVKEMQADMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLIL 543

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           S +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GR
Sbjct: 544 SEKGWIRSRAGHNLDLSQTAFKEGDCLKQTLEGRTILPVVILDSSGRTYTLDAAEIPGGR 603

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +  
Sbjct: 604 GDGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTA 663

Query: 645 SSEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI 697
            S E +   V V           +       + L F I ++  M++GKG+++     G  
Sbjct: 664 DSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGE- 722

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWL------GKRGGVGSLVP 741
             +    +   L  +  +     R        +       KRG  G L+P
Sbjct: 723 -SMTHTAVSSELEILIESE---GRRGAAHKDRIPISLLEAKRGKKGRLLP 768


>gi|325132712|gb|EGC55395.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M6190]
          Length = 780

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 269/768 (35%), Positives = 406/768 (52%), Gaps = 45/768 (5%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N+       + N   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +M
Sbjct: 15  NMQPHAPHTDSN--TLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDM 72

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD
Sbjct: 73  GLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGD 132

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIA
Sbjct: 133 GAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIA 192

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y 
Sbjct: 193 VGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYE 252

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------- 297
            G+G  RVRAR+ +E++ RG W ++VTE+P     S+++ +I E    K           
Sbjct: 253 TGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSSKILAEIEEQTNPKPKAGKKQLNQD 312

Query: 298 -----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
                      ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ 
Sbjct: 313 QLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLV 372

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           ++ +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I
Sbjct: 373 MMGLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVI 432

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
            +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ L
Sbjct: 433 KVIRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIL 492

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L+   ++   I  EI+   + +  +     RRT   E  RA            EPIT+++
Sbjct: 493 LSDENEKRKLIIKEIQADMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLIL 543

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           S +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GR
Sbjct: 544 SEKGWIRSRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGR 603

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +  
Sbjct: 604 GDGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTA 663

Query: 645 SSEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI 697
            S E +   V V           +       + L F I ++  M++GKG+++     G  
Sbjct: 664 DSGETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIGELKIMAKGKGLQIIGLNAGES 723

Query: 698 SDVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
                      +       R          + L     KRG  G L+P
Sbjct: 724 MTHTAVSSEPEILIESEGRRGAAHKDRIPISLLE---AKRGKKGKLLP 768


>gi|325128664|gb|EGC51532.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis N1568]
 gi|325205664|gb|ADZ01117.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M04-240196]
          Length = 765

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 264/751 (35%), Positives = 401/751 (53%), Gaps = 43/751 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 15  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 434

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 435 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 494

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + +  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 495 DMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 545

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 546 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 605

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+ SS G  FI + ++++   + GK  +   S E +   + V     
Sbjct: 606 PVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSF 665

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +       + L F I ++  M++GKG+++     G             +     
Sbjct: 666 INPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESLTHTAVSSEPEILIESE 725

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLVP 741
             R          + L     KRG  G L+P
Sbjct: 726 GRRGAAHKDRIPVSLLE---AKRGKKGKLLP 753


>gi|254673276|emb|CBA08348.1| topoisomerase IV subunit A [Neisseria meningitidis alpha275]
          Length = 1278

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 264/751 (35%), Positives = 401/751 (53%), Gaps = 43/751 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 15  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 434

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 435 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 494

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + +  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 495 DMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 545

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 546 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 605

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+ SS G  FI + ++++   + GK  +   S E +   + V     
Sbjct: 606 PVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSF 665

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +       + L F I ++  M++GKG+++     G             +     
Sbjct: 666 INPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESLTHTAVSSEPEILIESE 725

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLVP 741
             R          + L     KRG  G L+P
Sbjct: 726 GRRGAAHKDRIPVSLLE---AKRGKKGKLLP 753


>gi|121635258|ref|YP_975503.1| DNA topoisomerase IV subunit A [Neisseria meningitidis FAM18]
 gi|120866964|emb|CAM10726.1| DNA topoisomerase IV subunit A [Neisseria meningitidis FAM18]
 gi|325138598|gb|EGC61157.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis ES14902]
 gi|325142792|gb|EGC65164.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis 961-5945]
 gi|325198714|gb|ADY94170.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis G2136]
          Length = 765

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 267/751 (35%), Positives = 401/751 (53%), Gaps = 43/751 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 15  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     S+++ +I E    K                      ++ +RD
Sbjct: 255 ARGQWRVIVTELPPNANSSKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 434

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL+   ++   I  EI+ 
Sbjct: 435 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLSDENEKRKLIIKEIQA 494

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + +  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 495 DMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 545

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 546 QTTFKEGDRLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 605

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+ SS G  FI +  +++   + GK  +   S E +   V V     
Sbjct: 606 PVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSF 665

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +       + L F I ++  M++GKG+++     G             +     
Sbjct: 666 INPDCKIIAATNQNRALAFPIGELKIMAKGKGLQIIGLNAGESMTHTAVSSEPEILIESE 725

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLVP 741
             R          + L     KRG  G L+P
Sbjct: 726 GRRGAAHKDRIPISLLE---AKRGKKGKLLP 753


>gi|256847178|ref|ZP_05552624.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256715842|gb|EEU30817.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 843

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 211/760 (27%), Positives = 381/760 (50%), Gaps = 39/760 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ ++L   + ER+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 1   MSDNKIEELTLEQLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A L+L+ +D+D V+    +++ + EP V P++ PNL  NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGLMLRDIDKDTVEMTLNFDDTEKEPTVLPARIPNLFVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +A + L+ +PE  ++ L+ Y+ GPDFPTGG I++  + I ++Y  GRG   
Sbjct: 181 PPHNLRELIQALIYLLKHPEAFLDDLMTYVPGPDFPTGG-IIQGVDGIRKAYETGRGRVI 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA   +EE+  G   I+VTEIPY V K++L+++I +L + K++  + + RDE+      
Sbjct: 240 LRANTTIEELRGGRQQIIVTEIPYGVNKAQLVKRINDLRLNKKVEGISEARDETDRSGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R+ D + ++  +   +D++  +  NM  +   R P  + L   LK +LA ++E+
Sbjct: 300 IAIELKRNADANGILNYLLKNTDLQINYNFNMVAIDNQR-PMRVGLKHYLKSYLAFQQEI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F +     R+ I++GL+ A   +D++I  IR           +V+ +  T+ Q 
Sbjct: 359 ITRRTQFNLHKAQTRLHIVEGLIKALSILDQVIKTIRASKNRKDATQNLVNEYQFTQPQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   ++ E   L     + + +LN   +    +  E + + + F  
Sbjct: 419 EAIVALQLYRLTNTDVTDLRDEQQRLNDSIAEYNKILNDQNELNRVLVKEFKAIDKQFGS 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHF 545
                  R T  E          +  +  E + V++S+ G+I+     S     L     
Sbjct: 479 D------RKTQIEKHIQKLTVDTKVTVPDEEVVVLVSHAGYIKRTSLRSFKASVLEENGL 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIV 603
           +E D   +   A T + + + +  G     P         +  GE I   I L  +++I+
Sbjct: 533 REDDYPLLIQRASTLNHLFMFTNQGHVIYRPVHELTDAKWKETGEHISQSIGLADDEEII 592

Query: 604 TAFVYDS---TCKLLVVSSKGNAFIVEESEI---IANTRKGKTFLKVSSEEKMKLVVKVT 657
            A ++++      ++  +S G        ++        +    +K+           + 
Sbjct: 593 KALIFENLELPGTMIFSTSDGQVKQTTIQDLKPGSRYKSRASVVMKLKD----ASARMIN 648

Query: 658 GDH---------VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKIC 706
            ++         +  + ++   L F + ++P    R  GVR  + KD   + +++     
Sbjct: 649 AEYYEPQAQNVSLTAISKHGYGLRFDVAEVPTQGTRTAGVRAINLKDDDELVNLVQTADD 708

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           + L  +   G       N+L   +G R   G LV     +
Sbjct: 709 DRLAIMTQRGAFKEMRANELE--VGSRARRGVLVLHKLKK 746


>gi|226939028|ref|YP_002794099.1| DNA topoisomerase IV subunit A [Laribacter hongkongensis HLHK9]
 gi|226713951|gb|ACO73089.1| ParC [Laribacter hongkongensis HLHK9]
          Length = 760

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 269/766 (35%), Positives = 416/766 (54%), Gaps = 45/766 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++     +    ++ L    E  YL YA+S +K RA+P++ DG KPV RRI++AM EMG
Sbjct: 1   MTDLTAAPD----SLPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMKEMG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y++LVR+AQ F  RYPLI GQGNFG+ DGD 
Sbjct: 57  LAAGAKPVKSARVVGEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDG 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +A+L+L  +D+  VDF   Y+    EP + P++ P +L NG SGIAV
Sbjct: 117 AAAMRYTEARLTPIADLLLAEIDQGTVDFVPNYDGAFDEPRLLPARLPMVLLNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP HN+ E+  AA+AL+ +P +    L+ Y+ GPDFP GG I+ + + I  +Y  
Sbjct: 177 GMATEIPPHNLTEVAAAAVALLKDPALDTAGLMTYLPGPDFPGGGRIITASDDIRAAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           GRG  RVRA+W VE++ RG W ++V+E+P      +++ +I +    K            
Sbjct: 237 GRGSVRVRAQWEVEKLARGQWRVIVSELPPGSSAQKVLAEIEDATNPKPRAGKKALSQEQ 296

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     L+ +RDES     VR+V  PK+  L+PD  M  +   + ME    +N+ +
Sbjct: 297 QNLKNLMLSQLDRVRDESDGEHPVRLVFEPKSSRLNPDEFMTLLLAQTSMEQNVSMNLVM 356

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + M   PQ   L  IL EWL  R   + RR + R+  +++R+ IL+G  + +L++D +I 
Sbjct: 357 VGMDGRPQQKGLKAILSEWLGFRETTVTRRLAHRLDKVEQRIHILEGRQLVFLSLDAVIR 416

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D+PKP +++ F L+E Q + IL +RLR L +LE ++++ EL  L  E   +  LL
Sbjct: 417 VIRESDEPKPELMAAFGLSEIQAEDILEIRLRQLARLEGFRLEKELGELRDEAGGLRHLL 476

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S   +   I  EI      +       RRR+      +A         +  EP+T+++S
Sbjct: 477 ASDHARQKLIIKEIEADAAKYGD-----RRRSELKPAEKATL----TQTVADEPVTLILS 527

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GW+R+   H VDL+ L FK+GD+L   L   T   +++L + G+AYT+ A ++ +GRG
Sbjct: 528 KKGWLRARVGHHVDLATLAFKDGDALAAVLETRTVWPVVVLDSHGRAYTVDAADVPTGRG 587

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  +  LID+     +          + +V  S G  F+VE  ++++  + GK FL + 
Sbjct: 588 DGVPVTSLIDVQEQAQVCHMLAAPEDARFVVAGSGGYGFVVEMKDMVSRVKAGKAFLTLE 647

Query: 646 SEEKMKLVVKVT-----GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700
           + E     V VT        +  + +  + L+F   ++  +++G+G+ L    DG   + 
Sbjct: 648 AHEIPLAPVPVTAAGLAAGQLVAISQQARALVFPASELKALAKGRGLMLMQLDDGDTLET 707

Query: 701 ICFKICEGL----TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           +            T       S+     D   + GKR   G L+PK
Sbjct: 708 LAVVEGSAARICGTLRTGREDSFRLEFAD---YAGKRAKKGKLLPK 750


>gi|161870455|ref|YP_001599627.1| DNA topoisomerase IV subunit A [Neisseria meningitidis 053442]
 gi|161596008|gb|ABX73668.1| DNA topoisomerase IV subunit A [Neisseria meningitidis 053442]
          Length = 765

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 263/751 (35%), Positives = 399/751 (53%), Gaps = 43/751 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 15  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  + +  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IP HN+ E+ +
Sbjct: 135 LLLSEIHQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQ 194

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 434

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 435 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 494

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + +  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 495 DMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 545

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 546 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 605

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+ SS G  FI + ++++   + GK  +   S E +   + V     
Sbjct: 606 PVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSF 665

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +       + L F I ++  M++GKG+++     G             +     
Sbjct: 666 INPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESMTHTAVSSEPEILIESE 725

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLVP 741
             R          + L     KRG  G L+P
Sbjct: 726 GRRGAAHKDRIPISLLE---AKRGKKGKLLP 753


>gi|21904354|gb|AAM79232.1| putative DNA topoisomerase IV subunit C [Streptococcus pyogenes
           MGAS315]
          Length = 807

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 209/736 (28%), Positives = 377/736 (51%), Gaps = 26/736 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+ E+ +A + 
Sbjct: 121 DIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLSEVIDAVVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+R  +EE+  G 
Sbjct: 181 MIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRSRTEIEELKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +     +  D   +
Sbjct: 240 QQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIELKKEADSQTI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  RS F     ++
Sbjct: 300 LNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIERSKFDKAKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   +++E ++L      + +++      +N +  E+REVK+ F+        R +  + 
Sbjct: 419 DIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP------RLSELQA 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHT 559
                     ++I +E   V ++  G+++     S +   L  +  ++ D L     A T
Sbjct: 473 ESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDDELIFVKQAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-----STCKL 614
           T+ +LL +T G     P   L   R       L   +++          D          
Sbjct: 533 TEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLY 592

Query: 615 LVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRKL 670
           + V+  G     +  E+        K   ++K+  + +++  +  V  + + +V +N   
Sbjct: 593 VAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYA 652

Query: 671 LIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           L FS  ++P    +  GV+  + K+                 +    R   +        
Sbjct: 653 LRFSSQEVPIQGLKSAGVKGINLKNDDSLASAFAVTSNSFFVL--TQRGSLKRMAVDDIP 710

Query: 730 LGKRGGVGSLVPKGFP 745
              R   G LV +   
Sbjct: 711 QTSRANRGLLVLRELK 726


>gi|325201724|gb|ADY97178.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240149]
 gi|325208532|gb|ADZ03984.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis NZ-05/33]
          Length = 765

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 264/751 (35%), Positives = 402/751 (53%), Gaps = 43/751 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 15  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 434

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 435 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 494

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + +  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 495 DMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 545

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L ++  
Sbjct: 546 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNSAK 605

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+ SS G  FI + ++++   + GK  +   S E +   + V     
Sbjct: 606 PVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSF 665

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +       + L F I ++  M++GKG+++     G             +     
Sbjct: 666 INPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESLTHTAVSSEPEILIESE 725

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLVP 741
             R          + L     KRG  G L+P
Sbjct: 726 GRRGAAHKDRIPVSLLE---AKRGKKGKLLP 753


>gi|308389734|gb|ADO32054.1| DNA topoisomerase IV subunit A [Neisseria meningitidis alpha710]
 gi|325130659|gb|EGC53400.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis OX99.30304]
 gi|325136733|gb|EGC59333.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M0579]
          Length = 765

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 264/751 (35%), Positives = 401/751 (53%), Gaps = 43/751 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 15  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 434

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 435 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 494

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + +  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 495 DMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 545

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 546 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 605

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+ SS G  FI + ++++   + GK  +   S E +   + V     
Sbjct: 606 PVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSF 665

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +       + L F I ++  M++GKG+++     G             +     
Sbjct: 666 INPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESLTHTAVSSEPEILIESE 725

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLVP 741
             R          + L     KRG  G L+P
Sbjct: 726 GRRGAAHKDRIPVSLLE---AKRGKKGKLLP 753


>gi|313668023|ref|YP_004048307.1| DNA topoisomerase IV subunit A [Neisseria lactamica ST-640]
 gi|313005485|emb|CBN86920.1| DNA topoisomerase IV subunit A [Neisseria lactamica 020-06]
          Length = 765

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 266/751 (35%), Positives = 400/751 (53%), Gaps = 43/751 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 15  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 434

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 435 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIVKEMQA 494

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + +  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 495 DMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 545

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  I  LI+L +   
Sbjct: 546 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPISSLIELQNGAK 605

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+ SS G  FI +  +++   + GK  +   S E +   V V     
Sbjct: 606 PVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSF 665

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +       + L F I ++  M++GKG+++     G             +     
Sbjct: 666 INPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESMTHTAVSSEPEILIESE 725

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLVP 741
             R          + L     KRG  G L+P
Sbjct: 726 GRRGAAHKDRIPVSLLE---AKRGKKGKLLP 753


>gi|227889993|ref|ZP_04007798.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|227849437|gb|EEJ59523.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
          Length = 826

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 213/757 (28%), Positives = 383/757 (50%), Gaps = 30/757 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +  
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EAA+ L+ +P+ + + L++++ GPDFPTGGI++   + I E+Y  GRG  
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVL-GTKGIKEAYETGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VR++  ++E+      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+     
Sbjct: 241 QVRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +LAH+++
Sbjct: 301 SIVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAID-RMTPVQVGLKRILSSYLAHKKD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQ 427
           V+ +R+ F ++   +R+EI++GL+ A   +D++I  IR+    K    +   ++  T NQ
Sbjct: 360 VVTKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAKYDFTTNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +  Q+K E  +L  + EK + +L+  K     +  E+  VK  F 
Sbjct: 420 AEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNKVLERVVVKELNAVKREFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
                   R T      A     ++A++  E + V++S  G+++     S    D     
Sbjct: 480 SP------RRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSLRSFQSTDDEDNG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDI 602
              GD +       T D + + +  G     P         +  G+ +   I L+ +++I
Sbjct: 534 LPAGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEEI 593

Query: 603 VTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE----KMKL 652
           +  F  +        L+ ++ G    V  +++        +  T +K+ S +    ++  
Sbjct: 594 IRVFEVNDLKANLNFLIATNDGYIKQVTLADLQPTRTYKSRAITAIKLKSNDSKVIRIDQ 653

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTW 711
           V   + + + ++      + F I +IP    +  GV+  + KD            + +  
Sbjct: 654 VQPDSKEEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKDDDYIVNYVLADPKYIDL 713

Query: 712 I---DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           I       R   +     L     R   G LV +   
Sbjct: 714 IKVGIITQRGAFKQLKLNLINKITRAKRGVLVLRELK 750


>gi|218768577|ref|YP_002343089.1| DNA topoisomerase IV subunit A [Neisseria meningitidis Z2491]
 gi|121052585|emb|CAM08925.1| DNA topoisomerase IV subunit A [Neisseria meningitidis Z2491]
 gi|319410814|emb|CBY91203.1| topoisomerase IV subunit A [Neisseria meningitidis WUE 2594]
          Length = 765

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 266/751 (35%), Positives = 400/751 (53%), Gaps = 43/751 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 15  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKTDLMAAF 434

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 435 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIVKEMQA 494

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 495 DMKQFGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 545

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 546 QTAFKEGDRLKQTLEGRTILPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 605

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+ SS G  FI +  +++   + GK  +   S E +   V V     
Sbjct: 606 PVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSF 665

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +       + L F I ++  M++GKG+++     G             +     
Sbjct: 666 INPDCKIIAATNQNRALAFPIGELKIMAKGKGLQIIGLNAGESMTHTAVSSEPEILIESE 725

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLVP 741
             R          + L     KRG  G L+P
Sbjct: 726 GRRGAAHKDRIPISLLE---AKRGKKGKLLP 753


>gi|59801618|ref|YP_208330.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA 1090]
 gi|59718513|gb|AAW89918.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA 1090]
          Length = 767

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 262/767 (34%), Positives = 402/767 (52%), Gaps = 43/767 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQPHASHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDR 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L
Sbjct: 421 VIRESDDPKADLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   I  E++   + F  +     RRT   E  RA            EPIT+++S
Sbjct: 481 GDENEKRKLIIKEMQADMKQFGDA-----RRTLVEEAGRAVL----TQTAADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   
Sbjct: 592 DGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTAD 651

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   V V           +       + L F I ++  M++GKG+++     G   
Sbjct: 652 SGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESM 711

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
                     +       R            +     KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIE---AKRGKKGRLLP 755


>gi|269794918|ref|YP_003314373.1| DNA topoisomerase IV subunit A [Sanguibacter keddieii DSM 10542]
 gi|269097103|gb|ACZ21539.1| DNA topoisomerase IV subunit A [Sanguibacter keddieii DSM 10542]
          Length = 824

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 229/763 (30%), Positives = 362/763 (47%), Gaps = 37/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  + +   +E  +L YA S I  RA+PD RDG KPV RRI+  MS+MGL       K
Sbjct: 18  EKIVDIDVAQEMEGSFLEYAYSVIYARALPDARDGLKPVQRRILFQMSDMGLRPDRGHVK 77

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD ++YD+LVR+AQPF  R P++ G GNFG++D D  AA RYTEA
Sbjct: 78  SARVVGEVMGKLHPHGDTAIYDALVRMAQPFSLRLPMVDGHGNFGSLD-DGPAAPRYTEA 136

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A ++  G+DED VDF   Y+ +  +P V P+  PNLL NG SGIAVGMAT++  H
Sbjct: 137 RLAPAALVMTTGLDEDVVDFVPNYDNKLVQPEVLPAAIPNLLVNGASGIAVGMATNLAPH 196

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  L+ NP+ S+E L+ ++ GPD PTGG IV   E I ++YR GRG F+ RA
Sbjct: 197 NLIEVVAAARFLVANPKASLEDLMRFVPGPDLPTGGKIV-GLEGIRDAYRTGRGSFKTRA 255

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313
              VE V      +VVTE+PY V   ++IEKI E + AK++  +  + D +       ++
Sbjct: 256 TVRVENVTPKRKGLVVTELPYLVGPEKVIEKIKEGVQAKKLAGITAVTDLTDRSHGLRLV 315

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                  +P+ ++E ++  + ME  F +N   L     P+ + L  +L  W+ HR +V+ 
Sbjct: 316 IEIKTGFNPEAVLEQLYRYTPMEDSFGMNNVALVD-GQPRTLGLREMLSVWVDHRIDVVR 374

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDA 430
           RRS FR+     R+ +++GLL+A ++IDE+I +IR+ D        +   F L+E Q + 
Sbjct: 375 RRSQFRLTKRLDRLHLVEGLLLAIVDIDEVIQVIRSSDDADTARGRLREVFDLSEAQSEY 434

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L K    +++ E   L+ E E++ ++L         ++ E+ EV +++    
Sbjct: 435 ILELRLRRLTKFSRIELEKEQSALVEEIEQLRAILGDDALLRRVVSDEMAEVAKVYGTPR 494

Query: 491 DLGRRRT-----TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
                 +     T      + +       IE  P  V++S+ G +      +  +   H 
Sbjct: 495 RTILLDSAGGGVTGLPGPSSPRGAPVSLEIEDTPCWVLLSSTGLLARTSDETEPVRDDHR 554

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--------GEAIQLLIDLN 597
              D L   + A     +  L++ G+   L   +L +            G  +  +  L 
Sbjct: 555 HAHDVLASGVLASVRAEVGALTSAGRVVRLSVLDLPALPPTQGAPSLSGGVPVAEVCALE 614

Query: 598 HNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
             + +VT          L + ++ G    V + ++    R     + +   + +   V V
Sbjct: 615 PGERLVTVVSLAEDAPTLALGTAAGVVKRVAQGDV--PNRDSWEVVALKPGDAVVGAVPV 672

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY------------KDGGISDVIC 702
           T D  +  V     LL F    +    R   G+                 + G   +   
Sbjct: 673 TDDDELVFVSSEASLLHFPATAVRPQGRTAGGMAGIKLAGDQRVVFFGAVRAGQSEECAV 732

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +      +        ++          R   G    +   
Sbjct: 733 VTVAGASDALPGTQTGSVKTTAFAAYPGKGRATGGVRAHRFLK 775


>gi|156888547|gb|ABU96678.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888549|gb|ABU96679.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888551|gb|ABU96680.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 214/747 (28%), Positives = 384/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  
Sbjct: 301 ELKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIE 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+++     S +   L  +  ++ 
Sbjct: 478 ----RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT+ +LL +T G     P   L   R       L   +++          
Sbjct: 534 DELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
           D          L V+  G     E  E+        K   ++K+   ++++  +  +  +
Sbjct: 594 DIVTSFDQGLYLAVTQNGFTKRFERQELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVME 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V  +   L FS   +P    +  GV+  + K+     V  F +    ++     R 
Sbjct: 654 DLLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLKNEDKL-VSAFSVTSN-SFFVLTQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 SLKRMAVDDIPQTSRANRGLLVLRELK 738


>gi|269214097|ref|ZP_05983595.2| DNA topoisomerase IV, A subunit [Neisseria cinerea ATCC 14685]
 gi|269144559|gb|EEZ70977.1| DNA topoisomerase IV, A subunit [Neisseria cinerea ATCC 14685]
          Length = 752

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 265/751 (35%), Positives = 400/751 (53%), Gaps = 43/751 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 2   LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLAAGAKPVKSARVVGE 61

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 62  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 121

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 122 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 181

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 182 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 241

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 242 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 301

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 302 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 361

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 362 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 421

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 422 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 481

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 482 DMKQFGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 533 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 592

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+  S G  FI + ++++   + GK  + V S E +   V V     
Sbjct: 593 PVAMLTGQPEQHYLLSGSGGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPVAVYASSL 652

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +       + + F I ++  M +GKG+++     G             +     
Sbjct: 653 INPDCKIIAATNQNRAISFPIGELKIMPKGKGLQIIGLNAGESMTHTGVSSETEILIESE 712

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLVP 741
             R          + L     KRG  G L+P
Sbjct: 713 GKRGAAHKDRIPVSLLE---AKRGKKGKLLP 740


>gi|240016960|ref|ZP_04723500.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA6140]
 gi|240125064|ref|ZP_04737950.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|268683659|ref|ZP_06150521.1| ParC [Neisseria gonorrhoeae SK-92-679]
 gi|268623943|gb|EEZ56343.1| ParC [Neisseria gonorrhoeae SK-92-679]
          Length = 767

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 263/767 (34%), Positives = 402/767 (52%), Gaps = 43/767 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQPHASHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDR 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L
Sbjct: 421 VIRESDDPKADLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   I  E++   + F  +     RRT   E  RA            EPIT+++S
Sbjct: 481 GDENEKRKLIIKEMQADMKQFGDA-----RRTLVEEAGRAVL----TQTAADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  I  LI+L +    V           L+ SS G  FI +  +++   + GK  +   
Sbjct: 592 DGVPISSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTAD 651

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   V V           +       + L F I ++  M++GKG+++     G   
Sbjct: 652 SGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESM 711

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
                     +       R            +     KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIE---AKRGKKGRLLP 755


>gi|240127046|ref|ZP_04739707.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268685400|ref|ZP_06152262.1| ParC [Neisseria gonorrhoeae SK-93-1035]
 gi|268625684|gb|EEZ58084.1| ParC [Neisseria gonorrhoeae SK-93-1035]
          Length = 767

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 262/767 (34%), Positives = 401/767 (52%), Gaps = 43/767 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQPHASHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDR 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
            IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L
Sbjct: 421 AIRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   I  E++   + F  +     RRT   E  RA            EPIT+++S
Sbjct: 481 GDENEKRKLIIKEMQADMKQFGDA-----RRTLVEEAGRAVL----TQTAADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   
Sbjct: 592 DGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTAD 651

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   V V           +       + L F I ++  M++GKG+++     G   
Sbjct: 652 SGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESM 711

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
                     +       R            +     KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIE---AKRGKKGRLLP 755


>gi|240113730|ref|ZP_04728220.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae MS11]
 gi|254494487|ref|ZP_05107658.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae 1291]
 gi|268599802|ref|ZP_06133969.1| ParC [Neisseria gonorrhoeae MS11]
 gi|226513527|gb|EEH62872.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae 1291]
 gi|268583933|gb|EEZ48609.1| ParC [Neisseria gonorrhoeae MS11]
          Length = 767

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 262/767 (34%), Positives = 402/767 (52%), Gaps = 43/767 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQPHASHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDR 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L
Sbjct: 421 VIRESDDPKADLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   I  E++   + F  +     RRT   E  RA            EPIT+++S
Sbjct: 481 GDENEKRKLIIKEMQADMKQFGDA-----RRTLVEEAGRAVL----TQTAADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   
Sbjct: 592 DGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTAD 651

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   V V           +       + L F I ++  M++GKG+++     G   
Sbjct: 652 SGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESM 711

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
                     +       R            +     KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIE---AKRGKKGRLLP 755


>gi|240116473|ref|ZP_04730535.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID18]
 gi|240122331|ref|ZP_04735287.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID332]
 gi|260441694|ref|ZP_05795510.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
 gi|268602145|ref|ZP_06136312.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID18]
 gi|268680916|ref|ZP_06147778.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID332]
 gi|291045076|ref|ZP_06570784.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
 gi|268586276|gb|EEZ50952.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID18]
 gi|268621200|gb|EEZ53600.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID332]
 gi|291011079|gb|EFE03076.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
          Length = 767

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 263/767 (34%), Positives = 402/767 (52%), Gaps = 43/767 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQPHASHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDR 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L
Sbjct: 421 VIRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   I  E++   + F  +     RRT   E  RA            EPIT+++S
Sbjct: 481 GDENEKRKLIIKEMQADMKQFGDA-----RRTLVEEAGRAVL----TQTAADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  I  LI+L +    V           L+ SS G  FI +  +++   + GK  +   
Sbjct: 592 DGVPISSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTAD 651

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   V V           +       + L F I ++  M++GKG+++     G   
Sbjct: 652 SGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESM 711

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
                     +       R            +     KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIE---AKRGKKGRLLP 755


>gi|114764505|ref|ZP_01443730.1| DNA topoisomerase IV subunit A [Pelagibaca bermudensis HTCC2601]
 gi|114543072|gb|EAU46091.1| DNA topoisomerase IV subunit A [Roseovarius sp. HTCC2601]
          Length = 807

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 314/809 (38%), Positives = 451/809 (55%), Gaps = 66/809 (8%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++I +   +   +V    LR A+ +RYL YALSTI  RA+PD RDG KPVHRRI++AM  
Sbjct: 2   NDIVDDPNMNPRDVAE-PLRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILYAMRR 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSSNGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT +AE +L G+DE++VDFR  Y+    EP V P+ +PNLLANG+SGI
Sbjct: 121 DNPAASRYTEARMTIMAEALLDGLDENSVDFRPNYDGRLEEPSVLPASYPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A L LI  P    + LL+Y+ GPDFPTGG+IVE R++I ++Y
Sbjct: 181 AVGMATNIPPHNIGELIDACLHLIKAPGAGDDTLLQYVPGPDFPTGGVIVEPRDNIAQAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG  R+RA+W VE++GRG W  VVTEIPYQVQKS+L+E++AELI  K++P+L DIRD
Sbjct: 241 RTGRGSIRLRAKWEVEDLGRGQWQAVVTEIPYQVQKSKLVERLAELIQTKKVPILADIRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAED+R+VL PK++++DPDLLM  +F  SD+ETRF LNMNVL  G  P+V  L  +L+ 
Sbjct: 301 ESAEDIRMVLEPKSKNVDPDLLMNMLFKNSDLETRFSLNMNVLIDGVTPKVCSLKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           +L  RR+VL RR+  RM  ID R+E+L+GL+IA+LN+D +I IIR +D PK  ++     
Sbjct: 361 FLDFRRDVLCRRARHRMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMYEDWS 420

Query: 424 TENQVDAILNLRLRSLRK------LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             +Q         R  R       ++  +++ + +         +       Q++   + 
Sbjct: 421 KPHQATIARATDERDYRSPLAGIDVKALELRPDPEAEARGVLADEGTPTQIPQRFGGRSE 480

Query: 478 EIREVKEI-FSKSTDLGRRRTTFCEVSRADKATLQQAMI------------EKEPITVVI 524
            + +V+            RR    E+       +++               ++    +  
Sbjct: 481 GLSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASEDLQWKRVSEQLRE 540

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
             + + + L   +   +     E + + +          ++ S  G    +     L+  
Sbjct: 541 VKKAFAKDLDRGARLTTFAEAGEAEDVPLEAMIEREPITVVCSQMGWIRAMTGHIDLNRE 600

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK------GNAFIVEE---------- 628
              +       + H +      V  S  +   +S+       G    V            
Sbjct: 601 LKFKDGDGPRFIFHAETTDKLLVVGSNGRFYTLSAANLPGGRGMGEPVRLMVDLPNEAEI 660

Query: 629 SEIIANT---------RKGKTFLKVSSEEKMK------------------LVVKVTGDHV 661
            +++ +T           G  F+ V   + +                   +   VTGD V
Sbjct: 661 HDLLVHTPGRKLLVASSAGDGFI-VPENDVLAQTRSGKQVLNVKDGVKTQVCKPVTGDAV 719

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           AVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD   F + +GL+W D AGR   R
Sbjct: 720 AVVGENRKVLVFMLDELPEMGRGKGVRLQKYKDGGLSDATTFTLADGLSWKDPAGR--TR 777

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +E  L  W+GKR G G + P+GFPR   F
Sbjct: 778 TEAALDEWIGKRAGSGRMAPRGFPRDNTF 806


>gi|240014515|ref|ZP_04721428.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI18]
 gi|240079697|ref|ZP_04724240.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|240121037|ref|ZP_04733999.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID24-1]
 gi|268595844|ref|ZP_06130011.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|293399703|ref|ZP_06643855.1| DNA topoisomerase IV, A subunit [Neisseria gonorrhoeae F62]
 gi|268549632|gb|EEZ44651.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|291609954|gb|EFF39077.1| DNA topoisomerase IV, A subunit [Neisseria gonorrhoeae F62]
          Length = 767

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 263/767 (34%), Positives = 402/767 (52%), Gaps = 43/767 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQPHASHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDR 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L
Sbjct: 421 VIRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   I  E++   + F  +     RRT   E  RA            EPIT+++S
Sbjct: 481 GDENEKRKLIIKEMQADMKQFGDA-----RRTLVEEAGRAVL----TQTAADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  I  LI+L +    V           L+ SS G  FI +  +++   + GK  +   
Sbjct: 592 DGVPISSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTAD 651

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   V V           +       + L F I ++  M++GKG+++     G   
Sbjct: 652 SGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESM 711

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
                     +       R            +     KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIE---AKRGKKGRLLP 755


>gi|261400975|ref|ZP_05987100.1| DNA topoisomerase IV, A subunit [Neisseria lactamica ATCC 23970]
 gi|269209085|gb|EEZ75540.1| DNA topoisomerase IV, A subunit [Neisseria lactamica ATCC 23970]
          Length = 767

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 262/767 (34%), Positives = 403/767 (52%), Gaps = 43/767 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQPHASHTDSNTLILGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP HN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPPHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQ 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL
Sbjct: 421 VIRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +   ++   I  E++   + +  +     RRT   E  RA            EPIT+++S
Sbjct: 481 SDENEKRKLIVKEMQADMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  +  LI+L +    V           L+  S G  FI +  +++   + GK  +   
Sbjct: 592 DGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTAD 651

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   + V           +       + L F I ++  M++GKG+++     G   
Sbjct: 652 SGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESL 711

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
                     +       R          + L     KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRIPVSLLE---AKRGKKGRLLP 755


>gi|325204576|gb|ADZ00030.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240355]
          Length = 765

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 265/751 (35%), Positives = 400/751 (53%), Gaps = 43/751 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 15  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 434

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 435 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIVKEMQA 494

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F        RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 495 DMKQFGD-----VRRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 545

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 546 QTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 605

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+ SS G  FI + ++++   + GK  +   S E +   + V     
Sbjct: 606 PVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSF 665

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +       + L F I ++  M++GKG+++     G             +     
Sbjct: 666 INPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESLTHTAVSSEPEILIESE 725

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLVP 741
             R          + L     KRG  G L+P
Sbjct: 726 GRRGAAHKDRIPVSLLE---AKRGKKGKLLP 753


>gi|256832646|ref|YP_003161373.1| DNA topoisomerase (ATP-hydrolyzing) [Jonesia denitrificans DSM
           20603]
 gi|256686177|gb|ACV09070.1| DNA topoisomerase (ATP-hydrolyzing) [Jonesia denitrificans DSM
           20603]
          Length = 828

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 219/778 (28%), Positives = 357/778 (45%), Gaps = 38/778 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     + +   + E +  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MAHKPATTTPAPIAERIIDVDVTAEMETSFLEYAYSVIYSRALPDARDGMKPVQRRILYM 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M++MGL       K +R+VGEV+GKLHPHGD ++YD+LVRLAQ F  R PL+ G GNFG+
Sbjct: 61  MADMGLRPDRGHVKCSRVVGEVMGKLHPHGDSAIYDALVRLAQSFSLRVPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +   +DED VDF   Y+   ++P V P+  P LL NG 
Sbjct: 121 LD-DGPAAARYTEARLAASALAMTADLDEDVVDFIPNYDNRLTQPDVLPAAIPALLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E+  AA  L+ +P+ +++ L+ ++ GPD PTGG IV   + I 
Sbjct: 180 SGIAVGMATNLAPHNLVEVISAARHLLAHPDATLDDLMRHVPGPDLPTGGRIV-GLDGIR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y  GRG FR RA   +  V      IV+TE+PY V   ++IEKI E +  K++  + +
Sbjct: 239 EAYETGRGSFRTRATAQITNVTSRRRGIVITELPYLVGPEKVIEKIKEGVTNKKLAGISN 298

Query: 301 IRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +  +    ++       DPD ++E+++  + +E  F +N   L     P+ + L  
Sbjct: 299 VTDLTDREHGLKLVIEVKTGFDPDAVLEALYRYTPLEESFGINNVALVD-GQPRTLGLRD 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPV 416
           +++ W+ HR  V+ RRS +R++    R  +++GLL A L+IDE+I +IR  D     +  
Sbjct: 358 MIQVWVNHRISVIRRRSEYRLKRRTERQHLVEGLLRAILDIDEVIDVIRTSDDSATARTR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L+E Q D IL LRLR L K    +++ E D+L A+  ++  +L   +     ++
Sbjct: 418 LMDVFDLSEVQADYILELRLRRLTKFSRLELEKERDDLAAQIAELTEILGDERVLHRLVS 477

Query: 477 CEIREVKEIFSKSTDL--------GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            E+ +V                      +      R          I   P TVV+S+ G
Sbjct: 478 QEMADVARAHGTPRRTVLVTSDGSVSTSSAQPAPRRGAPVDPASLQIADAPCTVVLSSTG 537

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
            +      S  ++       D+L           I  L++ G+   +    L +      
Sbjct: 538 LLARTTDDSPLVADDQRSAHDALTSVTSTSVRGTIGALTSRGRVIKIQVVELPAIPSVDR 597

Query: 589 --------AIQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGK 639
                    +  L++L   + ++    +      L + ++ G    V  +E         
Sbjct: 598 SVSVAAGIPVTDLVELEGTERVIALVSFAEQAPPLAMGTAAGVVKRVAMNE--PPRADVF 655

Query: 640 TFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
             + +   +++      T D  +  +  + +LL F+   +    R   G+       G  
Sbjct: 656 DAITLKEGDEIVGAAHCTDDADLVFLSSDARLLRFTASSVRPQGRAAGGMSGMKLAPGTR 715

Query: 698 S-DVICFKICEGLTWIDSAG---------RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           +              +  AG             +     L     R   G    +   
Sbjct: 716 ALSFSVISPDTEAAVVTIAGARDALDNSVGGSIKVSPFDLFPRKGRATGGVRAHRFLK 773


>gi|197286190|ref|YP_002152062.1| DNA topoisomerase IV subunit A [Proteus mirabilis HI4320]
 gi|227357309|ref|ZP_03841666.1| DNA topoisomerase IV subunit A [Proteus mirabilis ATCC 29906]
 gi|194683677|emb|CAR44631.1| DNA topoisomerase IV subunit A [Proteus mirabilis HI4320]
 gi|227162572|gb|EEI47561.1| DNA topoisomerase IV subunit A [Proteus mirabilis ATCC 29906]
          Length = 985

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 264/734 (35%), Positives = 429/734 (58%), Gaps = 23/734 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  + V+   L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SELTHDGVERQPLHLFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ ++++L  +    VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYSQILLSELGHGTVDWIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +EI +A   L+DNP+  +  +++Y+ GPD+PT   ++ + E I + Y+ GRG
Sbjct: 182 TDIPPHNAREIGQALTMLLDNPDAGLSDVMQYVQGPDYPTEAEVITAPEDIKKIYKTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE      C V+T +P+QV  ++++E+IA L+ AK++PL++D+RDES  +
Sbjct: 242 SIRMRAVWQKEE-----GCAVITALPHQVSGAKVLEQIAALMRAKKLPLVDDLRDESDHE 296

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F+ +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRVDLEQVMYYLFVNTDLEKSYRVNLNMIGLDNRPAVKGLLTILNEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ +  R + R++ + RR+EILKGLLIAYLNIDE+I IIR ED+PK  ++ RF+L++ 
Sbjct: 357 YRRQTVTNRLNHRLEKVLRRLEILKGLLIAYLNIDEVIEIIRYEDEPKAELMRRFALSDI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL LRLR L KLEE ++++E D L  E++ I+ LLNS ++    +  EI    + F
Sbjct: 417 QAEAILELRLRHLAKLEEIKLQAESDELEKERDSIEKLLNSPRRLNTLLKKEIEADAKEF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+       A K   +Q M+  EP+T+V+S  GW+RS K H +D S + ++
Sbjct: 477 GDE-----RRSPIRPQEEA-KVVNEQDMLPSEPVTIVLSEMGWVRSAKGHEIDPSTMSYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS   A+   +   +L L + G++Y+L   ++ SGR  GE +   +    +  +    
Sbjct: 531 AGDSYHSAVRGMSNQPVLFLDSTGRSYSLSPNDMPSGRSQGEPLTGKLTFPPDASVKYML 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------H 660
              +  + L+ + +G   ++   E+    + GK  L VS E ++     V  +       
Sbjct: 591 AGAAKQEYLLATKEGYGSVLSYEEMETKNKTGKGLLTVSDETELLAPFLVDAEKKNNQHW 650

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG--GISDVICFKICEGLTWIDSAGR 717
           + ++ +  ++L  S + + EM  +G+G RL +       + + I              G+
Sbjct: 651 LVIITDKTRILAISAEHLNEMNKKGRGTRLVALGKEQSDVIEQIVLIAKNEALTFTVDGQ 710

Query: 718 SYNRSENDLLGWLG 731
                  ++  + G
Sbjct: 711 QQTLKAEEISYFSG 724



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/340 (20%), Positives = 135/340 (39%), Gaps = 10/340 (2%)

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
           P +V            I+  + R L    E+  +            +    +   +Q   
Sbjct: 637 PFLVDAEKKNNQHWLVIITDKTRILAISAEHLNEMNKKGRGTRLVALGKEQSDVIEQIVL 696

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           IA        +  +   L     ++      D+    + +  +  +TV++S +G IR  K
Sbjct: 697 IAKNEALTFTVDGQQQTLKAEEISYFSGDVGDEPIPLKHLHPEA-VTVIMSEKGLIRCQK 755

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H++D  ++ FK GD    A+   +   + L+ T G++YT+    L SGR  G+ +   +
Sbjct: 756 GHNIDAKSVGFKTGDDYFDAVEGMSNQAVHLIDTTGQSYTVDVDALPSGRSKGDDLTGRL 815

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            +     +    + +S+ K+L+ S  G  FI    ++ +  R GK+ L +          
Sbjct: 816 KVQKGAQLRHVVMGESSDKILMASDAGYGFICSIDDLTSKNRAGKSLLTLPENALPLPPQ 875

Query: 655 KVTG---DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD-----GGISDVICFKIC 706
           ++     D + ++ +  ++LIF   ++P M +GKG ++ S        G         + 
Sbjct: 876 RLNDELSDLIMIITQGGRMLIFEASELPTMVKGKGNQMVSIPASQAASGEDKVAWLRVLP 935

Query: 707 EGLTW-IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           E  +  +    R    S N+L  +  KRG  G+ +P+G  
Sbjct: 936 ENASVTLHFGKRKLTMSMNELQTFKAKRGRRGTSLPRGAQ 975


>gi|294815537|ref|ZP_06774180.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
 gi|294328136|gb|EFG09779.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 788

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 220/771 (28%), Positives = 363/771 (47%), Gaps = 35/771 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +        EE +  + +   ++  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 17  MARRSTKTPQPDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQ 76

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL     + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG+
Sbjct: 77  MNEMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGS 136

Query: 121 ID-GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +   D  AA RYTE RM     L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG
Sbjct: 137 LGNDDPPAAMRYTECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNG 196

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT++P HN+ E+  AA  LI  P   +E L+ ++ GPD PTGG +V     I
Sbjct: 197 SSGIAVGMATNMPPHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGGRVV-GLSGI 255

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG F++RA   VE+V      IVVTE+P+ V   ++I KI +L+ +K++  + 
Sbjct: 256 RDAYETGRGTFKIRATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIA 315

Query: 300 DIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           D++D +       ++        P+ ++E ++ L+ ME  F +N   L     P  + L 
Sbjct: 316 DVKDLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLK 374

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            +L+ +L HR  V+ RRS FR      R+ +++GLL+A ++IDE+I +IR+ +       
Sbjct: 375 ELLEVYLDHRFTVVRRRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQ 434

Query: 419 S---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
               RF L+E Q   IL+  LR L K +  +++SE D L+ E   +  +L S  +    +
Sbjct: 435 RLIERFGLSEVQTQYILDTPLRRLTKFDRIELESERDRLMDEIAALTRILESDAELRKLV 494

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           + E+  V + F        RRT   E        +   + +     ++ S     R++  
Sbjct: 495 SGELASVAKKFGTE-----RRTVLLESGAVPAPAVALEVADDPCRVLLSSTGLLARTVTG 549

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE------- 588
             +          D +  ++ A     I  +++ G+   +   +L               
Sbjct: 550 DPLPEPGPKRARHDLVVSSVTATARGDIGAVTSAGRLLRVAVIDLPQLPQTATAPTLSGG 609

Query: 589 -AIQLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
             +   + L  ++ ++     D + + L + + +G    V   +  AN +       +  
Sbjct: 610 APLSEFLSLEADETVICLTTLDESSQGLALGTLQGVVKRV-VPDYPAN-KDELEVFSLKE 667

Query: 647 EEKMKLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVIC 702
            +++      +   + +  +  + +LL +   Q+    R   G+      DG  +     
Sbjct: 668 GDRIVGGAELRTGEEDLVFITSDAQLLRYPAAQVRPQGRAAGGMAGVKLADGARVLSFTA 727

Query: 703 FKICEGLTWIDSAGRSY--------NRSENDLLGWLGKRGGVGSLVPKGFP 745
                      +AG +          +           R   G    +   
Sbjct: 728 VDPAAEAVVFTAAGSTGALDDSVTTVKLTPFDQYPRKGRATGGVRCQRFLK 778


>gi|329946868|ref|ZP_08294280.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526679|gb|EGF53692.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 850

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 227/813 (27%), Positives = 376/813 (46%), Gaps = 64/813 (7%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     + +    +  +  + L   +   +L YA S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MPKSASTQAPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  MGL       KS+R+VG+V+G+LHPHGD ++Y++LVRLAQPF  R PLI G GNFG+
Sbjct: 61  MDRMGLRPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +   +DED VDF   Y+   +EP V P+ FPNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALTLTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT++P HN+ E+  AA  L+ +PE S+E+L+ ++ GPD P GG+IV   + I 
Sbjct: 180 AGIAVGMATNMPPHNLVEVVAAARHLLTHPEASLEELMAFVPGPDLPAGGMIV-GLDGIR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR+GRG F  RA   VE V      IVVTE+PY V   ++I +I E + +K++  + D
Sbjct: 239 EAYRVGRGKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKIIARIKEAVGSKKLQGITD 298

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +       ++       +P+ ++  ++  + +E  F +N   L     P  + L  
Sbjct: 299 VADLTDRRHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVD-GQPHTLGLRE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---V 416
           +L+ ++ HR  V+ RR+ FR+     R  ++ GLLIA L+IDE+IA+IR+ D        
Sbjct: 358 LLEVFVRHRLTVVTRRTRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARSR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F LTE Q   IL L+LR L K    +++ E D L  E E ++++L         ++
Sbjct: 418 LMQVFDLTEPQASYILELQLRRLTKFSVIELEKERDELAREIEALEAILADEVLLRRVVS 477

Query: 477 CEIREVKEIFSKSTDL------GRRRTTFC--------------------------EVSR 504
            E+  V E F  S         G R T+                             ++ 
Sbjct: 478 RELAAVAEQFGTSRRTVLLETSGERVTSSASVAPPEDDASGATGGSTVKQAKASAEPMTL 537

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
              ++     +  +P  V++S  G +               +  D+L   +      RI 
Sbjct: 538 MPGSSPVPLTVPDDPCRVMLSATGLVARTPGAEPVARTGGRRPHDALTSQVATTARGRIG 597

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEA--------IQLLIDLNHNQDIVTAFVY--DSTCKL 614
            ++  G+   L   +        EA        ++ L+D    + +V            +
Sbjct: 598 AVTDTGRLVLLDVVSTSEVPRTEEAPGLAGATQVRQLVDTEPEEKVVGLVPVGSADNPPI 657

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF 673
           ++ ++ G    V+  +      +    + +S ++++         D +A+V  + +LL F
Sbjct: 658 VLATADGVIKRVKPGD-EPRNAESWEVISLSDDDRVVFAGTARDTDFLALVTSDAQLLRF 716

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGG------------ISDVICFKICEGLTWIDSAGRSYN 720
              ++    RG  G+   S ++G             +++ +   +    + +   G    
Sbjct: 717 QAAKVRPQGRGAGGMAGISLREGARVIAGAAVPEDLLAEAVVVTVAGSESSLPGTGGGSV 776

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +           R   G    +      + +++
Sbjct: 777 KVTPLDRYPAKGRATGGVRSHRFLRGEDELVAA 809


>gi|268319491|ref|YP_003293147.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii FI9785]
 gi|262397866|emb|CAX66880.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii FI9785]
          Length = 826

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 213/757 (28%), Positives = 384/757 (50%), Gaps = 30/757 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +  
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EAA+ L+ +P+++ + L++++ GPDFPTGGI++   + I E+Y  GRG  
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDVTTDDLMKFVKGPDFPTGGIVL-GTKGIREAYETGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VR++  ++E+      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+     
Sbjct: 241 QVRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +LAH+++
Sbjct: 301 SIVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAID-RMTPVQVGLKRILSSYLAHKKD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQ 427
           V+ +R+ F ++   +R+EI++GL+ A   +D++I  IR+    K    +   ++  T NQ
Sbjct: 360 VVTKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAKYDFTSNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +  Q+K E  +L  + EK + +L+  K     +  E+  VK  F 
Sbjct: 420 AEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNKVLEKVVVKELNAVKREFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
                   R T      A     ++A++  E + V++S  G+++     S    D     
Sbjct: 480 SP------RRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSLRSFQSTDDEDNG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDI 602
              GD +       T D + + +  G     P         +  G+ +   I L+ +++I
Sbjct: 534 LPAGDKIVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEEI 593

Query: 603 VTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE----KMKL 652
           +  F  +        L+ ++ G    V  +++        +  T +K+ S +    ++  
Sbjct: 594 IRVFEVNDLKANLNFLIATNDGYIKQVTLADLQPTRTYKSRAITAIKLKSNDSKVVRIDQ 653

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTW 711
           V   + + + ++      + F I +IP    +  GV+  + KD            + +  
Sbjct: 654 VQPDSKEEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKDDDYIVNYVLADPKYIDL 713

Query: 712 I---DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           I       R   +     L     R   G LV +   
Sbjct: 714 IKVGIITQRGAFKQLKLNLINKVTRAKRGVLVLRELK 750


>gi|326443887|ref|ZP_08218621.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 815

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 220/771 (28%), Positives = 363/771 (47%), Gaps = 35/771 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +        EE +  + +   ++  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MARRSTKTPQPDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL     + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG+
Sbjct: 61  MNEMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGS 120

Query: 121 ID-GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +   D  AA RYTE RM     L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG
Sbjct: 121 LGNDDPPAAMRYTECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT++P HN+ E+  AA  LI  P   +E L+ ++ GPD PTGG +V     I
Sbjct: 181 SSGIAVGMATNMPPHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGGRVV-GLSGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG F++RA   VE+V      IVVTE+P+ V   ++I KI +L+ +K++  + 
Sbjct: 240 RDAYETGRGTFKIRATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIA 299

Query: 300 DIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           D++D +       ++        P+ ++E ++ L+ ME  F +N   L     P  + L 
Sbjct: 300 DVKDLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            +L+ +L HR  V+ RRS FR      R+ +++GLL+A ++IDE+I +IR+ +       
Sbjct: 359 ELLEVYLDHRFTVVRRRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQ 418

Query: 419 S---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
               RF L+E Q   IL+  LR L K +  +++SE D L+ E   +  +L S  +    +
Sbjct: 419 RLIERFGLSEVQTQYILDTPLRRLTKFDRIELESERDRLMDEIAALTRILESDAELRKLV 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           + E+  V + F        RRT   E        +   + +     ++ S     R++  
Sbjct: 479 SGELASVAKKFGTE-----RRTVLLESGAVPAPAVALEVADDPCRVLLSSTGLLARTVTG 533

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE------- 588
             +          D +  ++ A     I  +++ G+   +   +L               
Sbjct: 534 DPLPEPGPKRARHDLVVSSVTATARGDIGAVTSAGRLLRVAVIDLPQLPQTATAPTLSGG 593

Query: 589 -AIQLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
             +   + L  ++ ++     D + + L + + +G    V   +  AN +       +  
Sbjct: 594 APLSEFLSLEADETVICLTTLDESSQGLALGTLQGVVKRV-VPDYPAN-KDELEVFSLKE 651

Query: 647 EEKMKLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVIC 702
            +++      +   + +  +  + +LL +   Q+    R   G+      DG  +     
Sbjct: 652 GDRIVGGAELRTGEEDLVFITSDAQLLRYPAAQVRPQGRAAGGMAGVKLADGARVLSFTA 711

Query: 703 FKICEGLTWIDSAGRSY--------NRSENDLLGWLGKRGGVGSLVPKGFP 745
                      +AG +          +           R   G    +   
Sbjct: 712 VDPAAEAVVFTAAGSTGALDDSVTTVKLTPFDQYPRKGRATGGVRCQRFLK 762


>gi|154795731|gb|ABS86853.1| gyrase A [Mycobacterium avium subsp. paratuberculosis]
          Length = 726

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 201/706 (28%), Positives = 336/706 (47%), Gaps = 20/706 (2%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D
Sbjct: 1   GFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGND 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIA
Sbjct: 61  PPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIA 120

Query: 185 VGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN+ E+ EA          + E ++  ++E + GPDFPT G ++   + I 
Sbjct: 121 VGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSG-LIVGTQGIA 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +
Sbjct: 180 DAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISN 239

Query: 301 IRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + LD 
Sbjct: 240 IEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVD-GVPRTLRLDQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPV 416
           +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     +  
Sbjct: 299 LIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQG 358

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   + 
Sbjct: 359 LIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVR 418

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ E+ E    +                  A                      RS K  
Sbjct: 419 DELAEIVEKHGDARRTRIVAADGDVSDEDLIAREDVXXXXXXXXXXXXXXXXLYRSQKRG 478

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI 594
              +     K+ D ++      T D IL  +T G+ Y   A  L        G+ +  L+
Sbjct: 479 GKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLL 538

Query: 595 DLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
                + I        Y+    L++ +  G     + ++  +N   G   + +   +++ 
Sbjct: 539 AFQPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELV 598

Query: 652 LVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICE 707
             V  +  D + +V  N + + FS     +  M R   GV+   +        +   + E
Sbjct: 599 GAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDYLLSLNV-VRE 657

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 658 GTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 703


>gi|240117116|ref|ZP_04731178.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
 gi|268602801|ref|ZP_06136968.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
 gi|268586932|gb|EEZ51608.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
          Length = 767

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 263/767 (34%), Positives = 403/767 (52%), Gaps = 43/767 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQPHASHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILVEIEEQTNPKPKAGKKQLNQDR 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL
Sbjct: 421 VIRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   I  E++   + F  +     RRT   E  RA            EPIT+++S
Sbjct: 481 GDENEKRKLIIKEMQADMKQFGDA-----RRTLVEEAGRAVL----TQTAADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   
Sbjct: 592 DGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTAD 651

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   V V           +       + L F I ++  M++GKG+++     G   
Sbjct: 652 SGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESM 711

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
                     +       R            +     KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIE---AKRGKKGRLLP 755


>gi|156888553|gb|ABU96681.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888555|gb|ABU96682.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 380/747 (50%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  
Sbjct: 301 ELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIE 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+++     S +   L  +  ++ 
Sbjct: 478 ----RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT+ +LL +T G     P   L   R       L   +++          
Sbjct: 534 DELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
           D          L V+  G     E  E+        K   ++K+   ++++  +  +  +
Sbjct: 594 DIVTSFDQGLYLAVTQNGFTKRFERQELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVME 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V  +   L FS   +P    +  GV+  + K+                 +    R 
Sbjct: 654 DLLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLKNEDKLVSTFSVTSNSFFVL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 SLKRMAVDDIPQTSRANRGLLVLRELK 738


>gi|239982759|ref|ZP_04705283.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
 gi|291454606|ref|ZP_06593996.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
 gi|291357555|gb|EFE84457.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
          Length = 815

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 230/766 (30%), Positives = 380/766 (49%), Gaps = 38/766 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   TPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDS 125
                + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++   D 
Sbjct: 68  RRDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DE+ VDF   Y+ ++ EPV  P+ FPNLL NG SGIAV
Sbjct: 128 PAAMRYTECRMADATSLMTESIDENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     + ++Y  
Sbjct: 188 GMATNMPPHNLGEVVAAARHLIKHPGADLETLMRFVPGPDLPTGGRIV-GLGGVRDAYAT 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +
Sbjct: 247 GRGTFKIRATVAVENVTARRKGLVVTELPFSVGPEKVISKIKDLVGAKKLQGIADVKDLT 306

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             +    ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +
Sbjct: 307 DREHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421
           L HR  V+ RRS FR      R+ +++GLL+A ++IDE+I IIR+ +   + +  ++ RF
Sbjct: 366 LDHRFTVVRRRSEFRRGKKRDRLHLVEGLLVALVDIDEVIRIIRDSENSAEARERLMERF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL++ Q   IL+  LR L + +  +++SE D L AE E++  +L+S  +    ++ E+  
Sbjct: 426 SLSDIQTQYILDTPLRRLTRFDRIELESERDRLTAEIEELSRILDSDAELRKLVSSELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V + +        RRT   E S A  A   Q  +E  P  V++S+ G +      +    
Sbjct: 486 VSKKYGT-----DRRTVLLESSGAAAAVPLQ--VEDTPCRVLLSSTGLLARTADATPLAE 538

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--------AIQLL 593
           A    + D +  A+ A     +  +++ G+   L   +L    G            +   
Sbjct: 539 APKRVKHDLIVSAVAATARGEVGAVTSAGRLLRLQVIDLPQLPGTDTAPSLSGGAPVAEF 598

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + L  ++ +V     D +   L + +++G    V   +  A+ ++    + +   +++  
Sbjct: 599 LTLEADERLVCLTTLDESSPGLALGTAQGVVKRV-VPDYPAH-KEELEVISLRDGDRIVG 656

Query: 653 V--VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEG 708
              ++   + +  + +   LL F    +    R   G+      +G  +           
Sbjct: 657 ATELRTGEEDLVFITDEAHLLRFPASVVRPQGRPAGGMAGVKLGEGARVVSFTAVDPAVD 716

Query: 709 LTWIDSAG---------RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 AG         ++  +           R   G    +   
Sbjct: 717 AVVFTVAGSRGTLDDSVQTTAKVTPFDQYPRKGRATGGVRCQRFLK 762


>gi|313123650|ref|YP_004033909.1| DNA topoisomerase iv subunit a [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280213|gb|ADQ60932.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 827

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 209/766 (27%), Positives = 384/766 (50%), Gaps = 32/766 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM   G     
Sbjct: 2   PETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA R
Sbjct: 62  PFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+ +++ ++L+ +D++ V     +++   EP V P++FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A + L+ +P+ S+E L+ ++ GPDFPTGG IV  ++ + ++Y+ G+G  
Sbjct: 182 IPPHNLGEVLDATIHLLKHPDTSLEDLMTFVKGPDFPTGG-IVMGKKGLRDAYKTGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VRA+  +EE+      IVVTEIPY V K++L++KI E+ +++ +  + ++RDE+     
Sbjct: 241 QVRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D   ++  +   +D++  +  NM  ++    P  + L  IL  +L H  E
Sbjct: 301 SIVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHM-TPVQVGLKRILAAYLEHEEE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ +R+ F ++    R+EI++GL+ A   +D++I +IR        K  +V+ F+ T+ Q
Sbjct: 360 VVTKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +   +++E + L ++    + +L   K    +I  E+R VK+ F 
Sbjct: 420 AEAIVSLQLYRLTNTDVLALQAEEEELTSKIAAYEKILADPKVLQKEIIKELRAVKKEFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+   +   A     ++A+I +E + V+IS  G+I+     S   +      
Sbjct: 480 -----SDRRSEISD-ETARVEVDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNG 533

Query: 548 GDSLKIALHAHTTDR---ILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDI 602
                  ++  +      + L +  G     P         +  G+ +   + L  ++ I
Sbjct: 534 LPETDQVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESI 593

Query: 603 VTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE-KMKLVV 654
           +  F      D     L+ ++ G    V  +++        +    +K+  E+ ++  V 
Sbjct: 594 IRVFALEALDDPNLAFLLATNDGFIKQVALADLQPTRTYKSRAIMAMKMKGEDSRVITVD 653

Query: 655 KVTGD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710
            V       + +       L + ID++P++  R  GV+  + K+            +   
Sbjct: 654 LVKTSEKREITLFTNQAFALKYDIDEVPQVGARAAGVKSINLKEDDYVVACLVTDPQYED 713

Query: 711 WI---DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
            +       R   +     L     R   G LV +    +  + ++
Sbjct: 714 LLKVGLVTQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKTKPHRIVA 759


>gi|329116178|ref|ZP_08244895.1| DNA topoisomerase IV, A subunit [Streptococcus parauberis NCFD
           2020]
 gi|326906583|gb|EGE53497.1| DNA topoisomerase IV, A subunit [Streptococcus parauberis NCFD
           2020]
          Length = 819

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 208/747 (27%), Positives = 382/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV+ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNVQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNRETLVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +LQ +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEISGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+ S++KL+E++ GPDFPTGG I++  E I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPKASLDKLMEFLPGPDFPTGG-IIQGAEEIKKAYETGKGRVIVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E +  G   IVVTEIPY++ KS L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 KTEFETLKGGKQQIVVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHR+ ++ +
Sbjct: 301 ELKKDADAQNVLNYLLKYTDLQVNYNFNMVAID-NYTPRQVGLIKILSSYIAHRKNIIVK 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  D     K  +   +  +E Q +AI
Sbjct: 360 RSQFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASDNKSDAKENLKLSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L      + +++ +    +N +  E+REVK+ F+ +  
Sbjct: 420 VTLQLYRLTNTDIVTLQNEEKELRDLITMLAAIIGNEATMFNVMKRELREVKKKFANA-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +V          ++I +E   V ++  G+++     S +   +  +  ++ 
Sbjct: 478 ----RRSELQVEAETIEINTASLIVEEETFVSVTRSGYLKRTSPRSFNASSIDEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN---QDIVTA 605
           D L     A TT  +L+ +  G     P   L   R       L   + +    ++++  
Sbjct: 534 DQLVFVEAAKTTQHLLIFTNLGNVIYRPIHELTDIRWKDTGEHLSQTITNYGTDEEVLHV 593

Query: 606 FVYDSTCKLLV--VSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
            + D   K     V+  G     E  ++        K   + K+ ++ +++  +  +  +
Sbjct: 594 EIVDQFTKGTYYSVTQLGQIKRFERKDLAPWRTYRSKSTKYAKIKNDQDRIISISPIFFE 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V  N   L FS  ++P    +  GV+  + K+            +    +    R 
Sbjct: 654 DITLVSHNGYALRFSSQEVPVQGLKSAGVKAMNLKNDDYIASAFIVQSDSFFVL--TQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 SLKRVAITDIPQTSRANRGLLVLRELK 738


>gi|319943519|ref|ZP_08017801.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lautropia mirabilis ATCC
           51599]
 gi|319743334|gb|EFV95739.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lautropia mirabilis ATCC
           51599]
          Length = 780

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 278/773 (35%), Positives = 419/773 (54%), Gaps = 49/773 (6%)

Query: 6   ISNSNTLVEENVKA-VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +     L EE     ++L    E  YL YA+STI+ RA+PD+ DG KPV RRI+ AM EM
Sbjct: 1   MDTEIILDEEESTDGLTLARYAERAYLDYAISTIRSRALPDVSDGQKPVQRRILFAMHEM 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL   A   KSAR+VG+V+GK HPHGD + YD++VR+AQ F  RYPL+ GQGNFG+ DGD
Sbjct: 61  GLGPAAKPVKSARVVGDVLGKYHPHGDSAAYDAMVRMAQDFSLRYPLVDGQGNFGSRDGD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR+TQ A L+L  +D+  V+F   Y+   +EP + P++ P +L NG SGIA
Sbjct: 121 GAAAMRYTEARLTQYARLLLDEIDQGTVEFVPNYDGSATEPELLPARLPMILLNGASGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           V MAT IPSHN+ E+ +AA+ALI +P++S E L++ + GPDFP GG I+ S   + E+YR
Sbjct: 181 VAMATEIPSHNLVEVAQAAIALIRDPKLSHEALMQIMPGPDFPGGGQIISSSADLAEAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------- 297
            GRG  RVRAR+ +EE+ RG W +VV E+P+ V   +++E++ EL   K           
Sbjct: 241 SGRGSIRVRARYHIEELARGQWQLVVDELPHGVSSQKVLEEVEELSNPKVRSGKKALTPE 300

Query: 298 -----------LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
                      ++ +RDES  +  VR+V  PK   ++  LL+ ++   + +ET   +N+ 
Sbjct: 301 QLQAKSQILNVMDAVRDESGREAAVRLVFEPKTSRIEQALLVNTLLACTSLETSVSINLV 360

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           +L   + P+   L  IL+EW+  R   + RRS+ R+  ++ R+ IL+G  +  LNIDE+I
Sbjct: 361 MLGQDKRPRQKTLTEILQEWIDFRLHTVRRRSAHRLGKVEDRIHILEGRQLVLLNIDEVI 420

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
            IIR  D+PKP ++  F LTE Q + IL +RLR L +LE  +I+ EL  L  E++K+  L
Sbjct: 421 RIIRESDEPKPALMQAFGLTERQAEDILEIRLRQLARLEAIRIEQELKELFDERKKLQGL 480

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L S       +  EI    + +        RRT       A +    +A   +EP+TV+I
Sbjct: 481 LGSEATLKKAVIKEIEADIKTYGD-----DRRTLI----EAAEKAAVEARQVEEPVTVII 531

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           S +GW+RS + H  D    +FK GD L  A    TTD++  L+++G+ Y++P   L S R
Sbjct: 532 SAKGWVRSRQGHGHDARQFNFKTGDELAGAYEVKTTDQLHALASNGRVYSIPVAGLPSAR 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G G  +   ++L     I+ AF   +   +L+ + KG        +  +  + GK FL +
Sbjct: 592 GDGVPVTSFVELEAGSQILHAFAAPADAGVLLATEKGFGLTCVAGDWQSRMKAGKHFLTL 651

Query: 645 SSEEKMKLVVKVTGDH----VAVVG------ENRKLLIFSIDQIPEMSR-GKGVRLQSY- 692
              +     V          V  +       +  ++L + + ++  + + G+GV L    
Sbjct: 652 EEGDVPLPPVLFDASRTDATVVCLSDGQGGGDKGRVLAYPVSEVKTLHKGGRGVTLMGLE 711

Query: 693 KDGGISDVICFKICEGLTWIDSAGR-----SYNRSENDLLGWLGKRGGVGSLV 740
           K   +  VI     +    +   GR     S   S  ++    G RG  G  +
Sbjct: 712 KKEKLRQVIVA--ADTGLVVTGTGRMAKPQSRTMSTREIAANTGTRGRKGKQL 762


>gi|297626461|ref|YP_003688224.1| DNA gyrase subunit A (DNA topoisomerase (ATP-hydrolysing))
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922226|emb|CBL56796.1| DNA gyrase subunit A (DNA topoisomerase (ATP-hydrolysing))
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 820

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 229/771 (29%), Positives = 375/771 (48%), Gaps = 43/771 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  V +   ++  YL YA S I  RA+PD RDG KPV RRI++ MSE  L
Sbjct: 6   TPPADDFEERIVDVDVSSEMQTSYLEYAYSVIYARALPDARDGLKPVQRRILYGMSEQRL 65

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                F K AR+VG+V+GKLHPHGD ++YD+LVR+ Q +  R  L+ G GNFG++D    
Sbjct: 66  TPDHPFVKCARVVGDVMGKLHPHGDSAIYDALVRMGQDWSMRLKLVDGHGNFGSLDA-GP 124

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE R+   A  +L G+ ED VDFR  Y+ +  EP V P+ FPNLL NG +GIAVG
Sbjct: 125 AAMRYTECRLAPAAMPMLDGLHEDTVDFRPNYDGKQLEPAVLPAAFPNLLVNGATGIAVG 184

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IPSHN+ E+  A   L+ NP   +++L+ Y+ GPD PTGG IV   + I  +Y  G
Sbjct: 185 MATNIPSHNLGEVVAALKYLLKNPGAEVDELMRYVPGPDLPTGGKIV-GLDGIRAAYATG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG FR RA   +E+V      IV+TE+P+ V   ++I++I  L+ +K+I  + D++D + 
Sbjct: 244 RGIFRTRATARIEQVSPRRRGIVITELPFAVGPEKIIDQIKVLVRSKKITGISDVKDLTD 303

Query: 307 ED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++      ++P+ L+  ++  + +E  F +N   L     P+ M L  +L+ +L
Sbjct: 304 LTYGLRLVIEVKNGINPEALLAQLYKHTKLEDSFGINAVALVD-GQPRTMTLKEMLQVYL 362

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            HR EV+ RR+ F++     R+ +++GLL+A ++ID++IAIIR+ D        ++  F 
Sbjct: 363 DHRLEVILRRAKFQLGKAQDRLHLVEGLLLAMIDIDDVIAIIRSSDDVPEARQRLMETFE 422

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q + IL+++LR L KL   ++++E D L     ++  L++    Q + +A ++ E+
Sbjct: 423 LDEIQANYILDMQLRRLTKLSRIELETERDELRRRITELTELIDDPDLQRDTVASQLSEM 482

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI-EKEPITVVISNRGWIRSLKSHSVDLS 541
              +        RRT   E S A  A   Q +    +P  V++S+ G +  +   +    
Sbjct: 483 AATYGSP-----RRTVLLEGSGAAAALPAQPLEIPDDPCWVMMSSTGLMARMTRPADGDD 537

Query: 542 ALHFK------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA------ 589
             H          D +  A+      +  +L++ G+     A +L    G   A      
Sbjct: 538 PGHLPTSGPRGRHDVVVAAIAVTAHAQFGVLTSHGRLVKAEAIDLPEVVGTANAPSLRGG 597

Query: 590 --IQLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
             ++ L+ L   +  V           L + + +G    V    +    +     +++  
Sbjct: 598 SRVEDLLVLTDAERAVGLTTLAEDSAGLALGTRRGVVKRVNPEVLS---KDEWDVIRLED 654

Query: 647 EEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS----- 698
            +++   V++T   D +  V  + +LL F+ D +    R G GV       G        
Sbjct: 655 NDEVVGGVELTDPSDELVFVTSDAQLLHFAADLVRPQGRSGGGVAGVRLTGGSSVVWFGV 714

Query: 699 ----DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
               D +   +    + +  A     +           R   G    +   
Sbjct: 715 SPATDAVVVTLSGTSSMLPGAQTGSVKVTPFEDYPPKGRATGGVRCHRFLK 765


>gi|119717173|ref|YP_924138.1| DNA topoisomerase IV subunit A [Nocardioides sp. JS614]
 gi|119537834|gb|ABL82451.1| DNA topoisomerase IV subunit A [Nocardioides sp. JS614]
          Length = 826

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 224/775 (28%), Positives = 375/775 (48%), Gaps = 38/775 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +     EE++    ++  +E  +L YA S I  RA+PD RDG KPV RRI++ M++MGL 
Sbjct: 9   DLPDDFEEHILDTDIKQEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMNDMGLR 68

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSA 126
                 K ARIVGEV+G+LHPHGD ++YD+LVR+AQP+  R P++ G GNFG+  G D  
Sbjct: 69  PDRGHVKCARIVGEVMGRLHPHGDSAIYDALVRVAQPWAMRLPMVDGHGNFGSPGGDDPP 128

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEARM   A  +   +DED VDF+  Y+  + EP V P+  P+L+ NGT+GIAVG
Sbjct: 129 AAMRYTEARMAPPAVAMTASIDEDTVDFKPNYDSRELEPSVLPAAIPSLVVNGTTGIAVG 188

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+   HN+ E+ +A   LI +P  ++E L+ ++ GPD PTGG IV   E + ++Y  G
Sbjct: 189 MATNCAPHNLVEVVQALRHLITHPSATVEDLMRFVPGPDLPTGGKIV-GLEGVRDAYETG 247

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG FR+RA   VE +      IVVTE+PY V   +++E+I  L+  K++  + DI+D + 
Sbjct: 248 RGTFRMRATARVESITNRRKGIVVTELPYGVGTEKVVERIKTLVQGKKLQGISDIKDLTD 307

Query: 307 EDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    ++        P+ L+E ++  + ME  F +N   L     P+ + L  +L+ +L
Sbjct: 308 RENGLRLVIEVKNGFVPEALLEQLYKHTPMEDTFGINAVALVD-GQPRTLSLKELLQVFL 366

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            HR +V+ RRS FR      R+ +++GLLIA L+IDE+I +IR+ D     K  ++S F 
Sbjct: 367 DHRFDVVRRRSVFRRGKAADRLHLVEGLLIAILDIDEVIQLIRSSDNAAAAKERLISVFD 426

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL++ LR L K    +++ E D+L    E++D+++N  K +W  ++ E+ E+
Sbjct: 427 LSEVQADYILDMPLRRLTKFSRIELEKEQDDLRRTIEELDAIINDDKLRWKVVSDELGEI 486

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +       RR         A  A      +  +P  V +S+ G +    +       
Sbjct: 487 AKTYGNP----RRTVLLESAGTAVTAAAVPLEVADDPCYVYLSSTGLLARTANADQPGRG 542

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--------AIQLLI 594
                 D +  A+ A     +  L++ G+   +    L                 +  ++
Sbjct: 543 GGRASHDVVVSAVPATARGEVGGLTSAGRLVKIGVLELPQLPDTANDPHLAGGLPVSEIL 602

Query: 595 DLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            L+  + ++      +    L + +  G    V    +    +     ++++  +++   
Sbjct: 603 ALDPGERLLALCTLTTDGPGLALGTRLGTVKRVNPEVLG---KDDWEVIRLADGDEVVGA 659

Query: 654 V--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS---DVICFKICE 707
           V  +   + +  +  + +LL F  + +    R G G+       G        I     E
Sbjct: 660 VELRTGHETLCFITTDAQLLHFGAEAVRPQGRSGGGIAGIRVTTGERVAWFGAIDPDTPE 719

Query: 708 GLTWIDSAGR---------SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G   + ++G             ++          R   G    +        + +
Sbjct: 720 GSVVVTASGSATALPGTEPGAVKATPFSEYPAKGRATGGVRCHRFLKGEDALVFA 774


>gi|329667367|gb|AEB93315.1| topoisomerase IV subunit A [Lactobacillus johnsonii DPC 6026]
          Length = 826

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 213/757 (28%), Positives = 382/757 (50%), Gaps = 30/757 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +  
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EAA+ L+ +P+ + + L++++ GPDFPTGGI++   + I E+Y  GRG  
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVL-GTKGIKEAYETGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VR++  ++E+      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+     
Sbjct: 241 QVRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +LAH+++
Sbjct: 301 SIVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAID-RMTPVQVGLKRILSSYLAHKKD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQ 427
           V+ +R+ F ++   +R+EI++GL+ A   +D++I  IR+    K    +   ++  T NQ
Sbjct: 360 VVTKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLISKYEFTHNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +  Q+K E  +L  + EK + +L+  K     +  E+  VK  F 
Sbjct: 420 AEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNKVLERVVVKELNAVKREFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
                   R T      A     ++A++  E + V++S  G+++     S    D     
Sbjct: 480 SP------RRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSLRSFQSTDDEDNG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDI 602
              GD +       T D + + +  G     P         +  G+ +   I L+ +++I
Sbjct: 534 LPAGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEEI 593

Query: 603 VTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE----KMKL 652
           +  F  +        L+ ++ G    V  +++        +  T +K+ S +    ++  
Sbjct: 594 IRVFEVNDLKANLNFLIATNDGYIKQVTLADLQPTRTYKSRAITSIKLKSNDSKVVRIDQ 653

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTW 711
           V   +   + ++      + F I +IP    +  GV+  + KD            + +  
Sbjct: 654 VQPDSKQEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKDDDYIVNYVLADPKYIDL 713

Query: 712 I---DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           I       R   +     L     R   G LV +   
Sbjct: 714 IKIGIITQRGAFKQLKLSLINKVTRAKRGVLVLRELK 750


>gi|261392159|emb|CAX49667.1| topoisomerase IV subunit A [Neisseria meningitidis 8013]
          Length = 765

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 263/751 (35%), Positives = 400/751 (53%), Gaps = 43/751 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 15  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 434

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 435 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 494

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + +  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 495 DMKQYGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 545

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 546 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 605

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+ SS G  FI + ++++   + GK  +   S E +   + V     
Sbjct: 606 PVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSF 665

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +       + L F I ++  M++GKG+++                   +     
Sbjct: 666 INPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNASESLTHTAVSSEPEILIESE 725

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLVP 741
             R          + L     KRG  G L+P
Sbjct: 726 GRRGAAHKDRIPVSLLE---AKRGKKGKLLP 753


>gi|331701469|ref|YP_004398428.1| DNA topoisomerase IV subunit A [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128812|gb|AEB73365.1| DNA topoisomerase IV, A subunit [Lactobacillus buchneri NRRL
           B-30929]
          Length = 812

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 211/753 (28%), Positives = 395/753 (52%), Gaps = 30/753 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             +++++L   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +   F+K
Sbjct: 2   SKIESLTLEDVMGERFSRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKPFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y++L R++Q +  R PLI   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEALNRMSQDWKVREPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +++D VD+   +++ + EP V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSKIASEMLRDIEKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L L  +P+ +++ L++++ GPDFPTG  IV+  + I ++Y  G G   VR+
Sbjct: 182 NLGEVIDAILYLQKHPDATLDDLMQFVKGPDFPTGA-IVQGIDGIKKAYETGHGKIIVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K++L+++I E+ + K+I  + ++RD+S  +   ++ 
Sbjct: 241 KTSIEPLKGNKSQIVITEIPYEVNKAQLVKRIDEIRLNKKIEGISEVRDQSDRNGLSIVV 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R +D   ++  +F  +D++  +  NM  +S  R P+ + L  IL  +L  ++EV+ +
Sbjct: 301 ELKRDVDSKGILNYLFKNTDLQVSYNFNMVAISHMR-PERLSLKKILVAYLEFQQEVIEK 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R  I++GL+ A   +D++I  IR        +  +V  +  +E Q DAI
Sbjct: 360 RTKYNLKKAQDRQHIVEGLIHALSILDKVIKTIRASKNRKDARDNLVKTYDFSEKQADAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  ++++E  +L  E  K + +LNS K+    +A E+R + + +     
Sbjct: 420 VALQLYRLTNTDVTELENEHQHLADEITKDNKILNSPKELNRVLANELRALAKTY----- 474

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--LSALHFKEGD 549
               R T  +   +D       +I  E + V++S+ G+I+     S     +    K+ D
Sbjct: 475 -RSARRTEIQAEVSDIKINTDVLIPDEDVIVMVSHDGYIKRSSIRSYKASTTDTGLKDED 533

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
                   +  D + + +  G     P      +  +  GE I   I L+ +++I+  + 
Sbjct: 534 YPIFMAELNARDHLFMFTNKGNLIYRPVFELADVKWKDTGEHISQTIGLDADEEIIGTYA 593

Query: 608 YDSTCK---LLVVSSKGNAFIVEESEIIA-NTRKGKTFL--KVSSEEKMKLVV-----KV 656
           +DS  +    L+ + +G+      +++    T K   +   K+ + ++  + +       
Sbjct: 594 FDSLKQPGTFLIATDQGHVKQTGFADMKPGRTYKSHAYTYEKLKTADERVVAIHYLKTPA 653

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI-DS 714
           T   + ++  N   L + ID++P    R  GV+    +  G+  V   ++      +   
Sbjct: 654 TAGQMLLISNNGLALRYGIDEVPVNGARTTGVKSMGLR--GVDKVTNLQLVSEDDVLAIV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
             R   +           R   G ++ +    +
Sbjct: 712 TQRGSFKKLAVKEIPATSRARKGVMILRELKNN 744


>gi|259503380|ref|ZP_05746282.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus antri DSM
           16041]
 gi|259168676|gb|EEW53171.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus antri DSM
           16041]
          Length = 817

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 224/738 (30%), Positives = 379/738 (51%), Gaps = 29/738 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +   F+KSA+ V
Sbjct: 1   MSLERLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKGFRKSAKSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+G  HPHGD S+Y++LVRL+Q +  R PL+   GN G++DGD AAA RYTEAR++++
Sbjct: 61  GNVMGNFHPHGDSSIYEALVRLSQDWKLREPLVEMHGNNGSMDGDPAAAMRYTEARLSKI 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT IP+HN+ E+
Sbjct: 121 AGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNLAEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + LI +P+ S+EKL+E+I GPDFPTGG IV+  E I ++Y+ GRG   VRA+  +E
Sbjct: 181 LDALIYLIKHPDASLEKLMEFIPGPDFPTGG-IVQGVEGIKKAYQTGRGRIVVRAKTEIE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +  G   I VTEIPY+V K++L+++I +L +AK++  + + RDE+      +     R+
Sbjct: 240 TLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIVEARDETDRSGLRIAIELKRN 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            +   ++  +   +D++  +  NM  +   R P  + L  IL  +LA ++EV+ RR+S+ 
Sbjct: 300 ANAAGILNYLLKNTDLQINYNFNMVAIDDQR-PMRVGLKRILTSYLAFQKEVVRRRTSYN 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRL 436
           +    RR+ I++GL+ A   +D++I  IR     K    +   +++ ++ Q +AI+ L+L
Sbjct: 359 LDKAQRRLHIVEGLIKALSILDQVIKTIRASKNRKDAKQNLIDQYAFSDVQAEAIVTLQL 418

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +  +++ E  +L    ++   +L+  ++    +  E++ VK+ F         R
Sbjct: 419 YRLTNTDVTELEDEHQHLNDLIDEYQLILSDDEELSKVVRREMQAVKKEFGNP------R 472

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553
            T  E          +  +  E + V++S+ G+I+     S     L     +E D   +
Sbjct: 473 RTQIEDQVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSFKASSLDEDGLREDDYPLL 532

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS- 610
               +T   + + +  G     P      +  +  GE I   I L  N++I+ A V+D  
Sbjct: 533 VTQTNTLAHLFMFTNRGHVIYRPVHELADVRWKDTGEHISQTIGLTDNEEIIKAMVFDKL 592

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVT----GDH--- 660
                 +  +S G        +    +R K    + V  +     VV V      D    
Sbjct: 593 DLPGSFIFGTSDGQVKQSAYKDYQPGSRYKSHASMAVKLKSADATVVSVDYYEPTDENRS 652

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           +  +      + F +  +P    R  GVR  + KD          + +G        R  
Sbjct: 653 LLAISREGYAVRFDVADVPVTGLRTAGVRAINLKDDDTL-ADLVLVKDGQRVASITQRGA 711

Query: 720 NRSENDLLGWLGKRGGVG 737
            +        +G R   G
Sbjct: 712 FKEMPIDEIAVGARARRG 729


>gi|325125699|gb|ADY85029.1| DNA topoisomerase IV subunit C [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 827

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 208/766 (27%), Positives = 382/766 (49%), Gaps = 32/766 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM   G     
Sbjct: 2   PETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA R
Sbjct: 62  PFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+ +++ ++L+ +D++ V     +++   EP V P++FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A + L+ +P+ S+E L+ ++ GPDFPTGG IV  ++ + ++Y+ G+G  
Sbjct: 182 IPPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGG-IVMGKKGLRDAYKTGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VRA+  +EE+      IVVTEIPY V K++L++KI E+ +++ +  + ++RDE+     
Sbjct: 241 QVRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D   ++  +   +D++  +  NM  ++    P  + L  IL  +L H  E
Sbjct: 301 SIVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHM-TPVQVGLKRILAAYLEHEEE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ +R+ F ++    R+EI++GL+ A   +D++I +IR        K  +V+ F+ T+ Q
Sbjct: 360 VVTKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +   +++E + L  +    + +L   K    +I  E+R VK+ F 
Sbjct: 420 AEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILADSKVLQKEIIKELRAVKKEFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+   +   A     ++A+I +E + V+IS  G+I+     S   +      
Sbjct: 480 -----SDRRSEISD-ETARVEVDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNG 533

Query: 548 GDSLKIALHAHTTDR---ILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDI 602
                  ++  +      + L +  G     P         +  G+ +   + L  ++ I
Sbjct: 534 LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESI 593

Query: 603 VTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE-KMKLVV 654
           +  F      D     L+ ++ G    V  +++        +    +K+  E+ ++  V 
Sbjct: 594 IRVFALEALDDPDLAFLLATNDGFIKQVALADLQPTRTYKSRAIMAMKMKGEDSRVITVD 653

Query: 655 KVTGD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710
                    + +       L + ID++P++  R  GV+  + K+            +   
Sbjct: 654 LAKTSEKREIILFTNQAFALKYDIDEVPQVGARAAGVKSINLKEDDYVVACLVTDPQYED 713

Query: 711 WI---DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
            +       R   +     L     R   G LV +    +  + ++
Sbjct: 714 LLKVGLVTQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKTKPHRIVA 759


>gi|314923403|gb|EFS87234.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL001PA1]
          Length = 844

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 215/769 (27%), Positives = 372/769 (48%), Gaps = 38/769 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +    EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+   
Sbjct: 7   DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPD 66

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
               KSAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG++D    AA 
Sbjct: 67  RPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT
Sbjct: 126 RYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMAT 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+  A   ++D+P+  +++++ ++ GPD PTGG I+   + I ++YR GRG 
Sbjct: 186 NIPPHNLVEVVAALRHMLDHPDADLDEIMRFVPGPDLPTGGRII-GLDGIADAYRTGRGS 244

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
           F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D +   +
Sbjct: 245 FKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTN 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++      ++P+ L+E ++ L+ +E  F +N   L     P+ + L  +L+ +L HR
Sbjct: 305 GTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLV-EGQPRTLGLLEMLQVYLDHR 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            +V  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  ++  F L E
Sbjct: 364 LDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLMGTFDLDE 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL+++LR L K    +++SE   L    E +  +++   +    ++ E+ EV   
Sbjct: 424 VQANYILDMQLRRLTKFSTIELESERGELRERIEGLTLIVSDEAELRRVVSGELAEVSSK 483

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RRT     + +  A      +  +P  V++S    +  + +     S    
Sbjct: 484 YGTP-----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATSLLARIDTADGLPSGGDR 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--------LLSGRGHGEAIQLLIDLN 597
              D +  +          ++++ G+   + A                 G  +  L+ L 
Sbjct: 539 ATHDVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLE 598

Query: 598 HNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
             +  +           L + +  G    V    +    ++    + +   +++   V++
Sbjct: 599 KGERALAVTSLSGEGPSLALGTRNGIVKRVNPELLG---KESWEVIGLKDGDEVVGAVEM 655

Query: 657 TGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             + + +  V +   LL F    +    R G GV     KD             G + + 
Sbjct: 656 GDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD--PVIFFGAAPRRGSSVVT 713

Query: 714 SA---------GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            A              +           R   G    +        + +
Sbjct: 714 VAASSPAAAGKEPGSIKLTPFDQYPPKGRATGGMRCQRFLKGETALVFA 762


>gi|282854006|ref|ZP_06263343.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J139]
 gi|282583459|gb|EFB88839.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J139]
 gi|314966750|gb|EFT10849.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL082PA2]
 gi|314981083|gb|EFT25177.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA3]
 gi|315091909|gb|EFT63885.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA4]
 gi|315093334|gb|EFT65310.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL060PA1]
 gi|315103410|gb|EFT75386.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA2]
 gi|327327575|gb|EGE69351.1| DNA gyrase, A subunit [Propionibacterium acnes HL103PA1]
          Length = 844

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 216/769 (28%), Positives = 373/769 (48%), Gaps = 38/769 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +    EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+   
Sbjct: 7   DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPD 66

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
               KSAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG++D    AA 
Sbjct: 67  RPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT
Sbjct: 126 RYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMAT 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+  A   ++D+P+  +++++ ++ GPD PTGG I+   + I ++YR GRG 
Sbjct: 186 NIPPHNLVEVVAALRHMLDHPDADLDEIMRFVPGPDLPTGGRII-GLDGIADAYRTGRGS 244

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
           F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D +   +
Sbjct: 245 FKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTN 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++      ++P+ L+E ++ L+ +E  F +N   L     P+ + L  +L+ +L HR
Sbjct: 305 GTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLV-EGQPRTLGLLEMLQVYLDHR 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            +V  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  ++  F L E
Sbjct: 364 LDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLMGTFDLDE 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL+++LR L K    +++SE   L    E +  +++   +    ++ E+ EV   
Sbjct: 424 VQANYILDMQLRRLTKFSTIELESERGELRERIEGLTLIVSDEAELRRVVSGELAEVSSK 483

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RRT     + +  A      +  +P  V++S  G +  + +     S    
Sbjct: 484 YGTP-----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLLARIDTADGLPSGGDR 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--------LLSGRGHGEAIQLLIDLN 597
              D +  +          ++++ G+   + A                 G  +  L+ L 
Sbjct: 539 ATHDVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLE 598

Query: 598 HNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
             +  +           L + +  G    V    +    ++    + +   +++   V++
Sbjct: 599 KGERALAVTSLSGEGPSLALGTRNGIVKRVNPELLG---KESWEVIGLKDGDEVVGAVEM 655

Query: 657 TGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             + + +  V +   LL F    +    R G GV     KD             G + + 
Sbjct: 656 GDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD--PVIFFGAAPRRGSSVVT 713

Query: 714 SA---------GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            A              +           R   G    +        + +
Sbjct: 714 VAASSPAAAGKEPGSIKLTPFDQYPPKGRATGGMRCQRFLKGETALVFA 762


>gi|320008113|gb|ADW02963.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces flavogriseus ATCC
           33331]
          Length = 816

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 224/775 (28%), Positives = 376/775 (48%), Gaps = 38/775 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI+  M+EMGL
Sbjct: 8   TPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDS 125
                + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++   D 
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DED VDF+  Y+ ++ EPVV P+ +PNLL NG SGIAV
Sbjct: 128 PAAMRYTECRMADATSLMTESIDEDTVDFQSNYDGQEQEPVVLPAAYPNLLVNGASGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     I ++Y  
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIRHPGADLETLMRFVPGPDLPTGGRIV-GLGGIKDAYAA 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   +E V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +
Sbjct: 247 GRGTFKIRATVAIENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +
Sbjct: 307 DRAHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           L HR +V+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ D     K  ++ RF
Sbjct: 366 LDHRFDVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLMERF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q   IL+  LR L + +  ++++E D L  E  ++ ++L S  +    ++ E+  
Sbjct: 426 SLSEIQTQYILDTPLRRLTRFDRIELETERDKLSQEIAELTAILESDAELRKLVSSELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--VD 539
           V + F        RRT   E + +  A+     +  +P  V++S+ G +    +      
Sbjct: 486 VAKKFGT-----DRRTVLLESAGSQVAS-VPLEVADDPCQVLLSSTGLLARTANAEPIEQ 539

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--------EAIQ 591
                  + D++  A+ A     +  +++ G+   L   +L                 + 
Sbjct: 540 TEDARRTKHDAIVSAVPATARGDVGAVTSAGRLLRLSVIDLPQLPDTHAAPNLSGGAPVA 599

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + L  ++ ++     D     L + + +G    V   +  AN +     + +   +++
Sbjct: 600 EFLTLEADEQLICLTTLDEEALGLAIGTLQGVVKRV-VPDYPAN-KDELEVITLKDGDRI 657

Query: 651 KLV--VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKIC 706
                ++   + +  +  + +LL +    +    R   G+      +G  +         
Sbjct: 658 VGATQLRTGEEDLVFITSDAQLLRYPAASVRPQGRPAGGMAGVKLTEGATVLSFTAVDPS 717

Query: 707 EGLTWIDSAGRSYN--------RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +       AG            +           R   G    +        + +
Sbjct: 718 KDAAVFTVAGSHGTLDDSERTWKLTPFDQYPRKGRATGGVRCQRFLKGEDVLVFA 772


>gi|262369531|ref|ZP_06062859.1| type IIA topoisomerase [Acinetobacter johnsonii SH046]
 gi|262315599|gb|EEY96638.1| type IIA topoisomerase [Acinetobacter johnsonii SH046]
          Length = 993

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/827 (29%), Positives = 387/827 (46%), Gaps = 107/827 (12%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKNSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM ++   IL  +++D VD+ D Y+  +  P V P++ PNLL NGT+GIAVGMAT++
Sbjct: 121 TEVRMRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  +NP ISIE L+EYI GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYAENPNISIEGLMEYISGPDFPTGG-IIYGKAGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K++ IE+IAEL+  K++  + ++RDES +D  
Sbjct: 240 IRGKYHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F  + +E  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVVVNNLFQNTQLENSFSINMVCLD-NGQPKLMNLKDIVAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------ 418
           V+ RR+ F ++    R  IL+GL +A  NID II  I+    P                 
Sbjct: 359 VVTRRTMFELRKARERGHILEGLTVALANIDAIIETIKTSANPAEARERLQAGEWAAGNV 418

Query: 419 ------------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV AIL LRL  L  LE+ +++
Sbjct: 419 IALLEKAGSVSVRPDEIEGEDPSRPFGLDGQIYRLSPAQVGAILELRLHRLTGLEQDKLQ 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN        I  E+  + + +  +     RRT   E   +   
Sbjct: 479 AEYTEILGQIAELTAILNDFNLLMAVIKEELALILQQYGDA-----RRTAIVE---SRID 530

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+ ++                SA   KE D ++  +     
Sbjct: 531 FSREDLIPEEQVVLTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             +L  +  GK Y L    +       +   +  L+ L+ ++ I          K     
Sbjct: 591 ATVLCFTNVGKVYRLRVFEVPQASRGSKGRPMVNLLPLDADETITAILPVIDAPKK-FKE 649

Query: 619 SKGNAFIVEESEIIANTRKGKT-----FLK-----VSSE-EKM----------KLVVKVT 657
                     S +               LK     ++ + +++            V   T
Sbjct: 650 RLAEFKNFVRSNVATLRENSIIDAHYDALKASFDELAEDADELSDALRKQLKELGVELST 709

Query: 658 GDH--------------------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI 697
            D                     V +   +  +    ++Q   + R  G+R    K+   
Sbjct: 710 TDLDNETVVEFADLAEKMRKNFFVFMATASGTVKRVELEQFSNV-RSNGLRAIELKEEDT 768

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
              +     E    + S         ++    +  R   G    +  
Sbjct: 769 LIGVAITDGEQQIMLFSNE-GKAIRFSETDARVMGRTAKGVRGMRVT 814



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 26/167 (15%)

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLL 671
            + + ++ G    VE  +       G   +++  E+ +  V    G+  + +     K +
Sbjct: 732 FVFMATASGTVKRVELEQFSNVRSNGLRAIELKEEDTLIGVAITDGEQQIMLFSNEGKAI 791

Query: 672 IFSIDQIPEMSR-GKGVRLQSYK------DGGIS------------------DVICFKIC 706
            FS      M R  KGVR           +  +                    V    + 
Sbjct: 792 RFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDEESSDLNVASRIVSLVVVP 851

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 852 ETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGA 898



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMK 651
           DLN    IV+  V   T ++L  S+ G        +     R GK  + + + E   ++ 
Sbjct: 837 DLNVASRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELV 896

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             V +     + ++ +   L+     ++    R  +GVRL    +  I
Sbjct: 897 GAVAIDESKELMLISDGGTLVRTRASEVARTGRNAQGVRLIRLGNEEI 944


>gi|254805369|ref|YP_003083590.1| topoisomerase IV subunit A [Neisseria meningitidis alpha14]
 gi|254668911|emb|CBA07100.1| topoisomerase IV subunit A [Neisseria meningitidis alpha14]
          Length = 765

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 265/751 (35%), Positives = 398/751 (52%), Gaps = 43/751 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 15  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  + +  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IP HN+ E+ +
Sbjct: 135 LLLSEIHQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQ 194

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+ S + +   Y  G+G  RVRAR+ +E++
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITSADELRRIYETGKGSVRVRARYEIEKL 254

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDIRD 303
            RG W ++VTE+P     ++++ +I E    K                      ++ +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 375 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 434

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 435 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 494

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +     RRT   E  RA            EPIT+++S +GWIRS   H++DLS
Sbjct: 495 DMKQFGDA-----RRTLVEEAGRAVL----TQTTADEPITLILSEKGWIRSRAGHNLDLS 545

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  I  LI+L +   
Sbjct: 546 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPISSLIELQNGAK 605

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----- 656
            V           L+  S G  FI +  +++   + GK  +   S E +   V V     
Sbjct: 606 PVAMLTGLPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSF 665

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +       + + F I ++  M++GKG+++     G             +     
Sbjct: 666 INPDCKIIAATSQNRAIAFPIGELKIMAKGKGLQIIGLNAGESMTHTAVSSEPEILIESE 725

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLVP 741
             R          + L     KRG  G L+P
Sbjct: 726 GRRGAAHKDRIPISLLE---AKRGKKGRLLP 753


>gi|296391805|ref|ZP_06881280.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAb1]
          Length = 644

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 252/654 (38%), Positives = 393/654 (60%), Gaps = 14/654 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++ +L E++ GPDFPT   I+  R  + + Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IV+  +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM  +F  +D+ET + +N+N++ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF 
Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S  +    +  E+ + 
Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVARAEARALSETELM-PTEPVTVVLSEKGWVRCAKGHDIDAAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y+LPA +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
               + D     ++ S  G  F+V+  ++ A  + GK  L + +   +     V
Sbjct: 590 ECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPV 643


>gi|257867818|ref|ZP_05647471.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC30]
 gi|257874146|ref|ZP_05653799.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC10]
 gi|257801901|gb|EEV30804.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC30]
 gi|257808310|gb|EEV37132.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC10]
          Length = 820

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 219/755 (29%), Positives = 395/755 (52%), Gaps = 29/755 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+
Sbjct: 4   KSNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKGFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 64  KSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++++  +L+ ++++ V+    +++ + EP V P+K+PNLL NG++GI+ G AT IP+
Sbjct: 124 ARLSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +  + LID+P+ S+++L++YI GPDFPTGGI+   +E I ++Y  G+G   +R
Sbjct: 184 HNLGEIIDGTIYLIDHPQASLDQLMKYIPGPDFPTGGILQ-GKEEIKKAYETGKGKVILR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   IV+ EIPY+V K+ L++K+ E+ + KRI  + ++RDE+      ++
Sbjct: 243 SKTKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  +   ++  +F  ++++  +  NM  +   R PQ + L  IL+ ++ HRREV+ 
Sbjct: 303 VELKKEANAQGILNYLFKNTELQINYNFNMVAIDNMR-PQQVGLKRILESYIKHRREVIE 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           +RS F +Q   +R  I+ GL+ A   +DE+IA IR     K    +   +   TE Q +A
Sbjct: 362 KRSRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVIQHGFTEEQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+NL+L  L   +  Q+++E   L     ++ ++LN   +    I  E+RE+K+ ++   
Sbjct: 422 IVNLQLYRLTNTDITQLQAEAKELAETIAELTTILNEENELLKVIKKELREIKKKYTTP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKE 547
                R T  E    +     Q ++ +E + V ++  G+++     S        +  KE
Sbjct: 481 -----RLTEIEAEIQEIKIETQVLVTQEEVVVTVTRDGYVKRSSLRSYGASKPEEIGMKE 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVT 604
           GDSL  +   +T D +LL++  G     P   L   +           ++ L  ++ I+ 
Sbjct: 536 GDSLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPDLKWKDLGEHISQTVMTLAQDEMIIG 595

Query: 605 AFVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVT 657
            F Y   D     +++S  G       +E         +  T +K+  E +++  V    
Sbjct: 596 VFAYKEIDPLKNFVLISKNGMIKQTRMTEFEPWRTYKTRPMTIMKLKDETDELVNVFLTD 655

Query: 658 GD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WI 712
                 V +V      L +S++++P +  +  GV+  + K             EG T  +
Sbjct: 656 QTEEMDVFLVSHLAFGLRYSLNEVPVVGPKAAGVKAMNLKADDYLINGLLVYSEGDTPIV 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               R   +           R   G +V +   ++
Sbjct: 716 LITQRGAAKRMLAQEITQLGRAKRGLMVLRELKKN 750


>gi|323342061|ref|ZP_08082294.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464486|gb|EFY09679.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 822

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 214/748 (28%), Positives = 379/748 (50%), Gaps = 27/748 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +++  + +   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM      +   
Sbjct: 1   MSHDSLIKLPIEDIVGERFGRYSKYIIQERALPDVRDGLKPVQRRILYAMFHDKNFYDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG VIG  HPHGD SVY+++VR++Q +    PLI  QGN G+ID D AAA RY
Sbjct: 61  YRKSAKTVGLVIGNYHPHGDSSVYEAMVRMSQSWKMNMPLIDMQGNNGSIDDDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++++ +L+ +DE+ V F   +++  +EP V P+++PNLL NG++GIA G AT+I
Sbjct: 121 TEARISKLSQKLLENIDEEVVPFVLNFDDMTTEPSVLPARYPNLLVNGSTGIAAGYATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P  N+ EI +A++  + NP  S+E+++  + GPDFPTG  I++ +E I +  R G+G   
Sbjct: 181 PPFNLNEIMDASIYRLHNPNCSVEEIMTMVQGPDFPTGA-IIQGQEGIEDIIRKGKGRIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL---EDIRDESAED 308
           VRA+  + E       IV+TE+PY+V KS ++ KI EL   K         D+RDES   
Sbjct: 240 VRAKAEIVENKS-MKQIVITELPYEVIKSNVVRKIDELRFTKASEGFGDVMDVRDESDRT 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + + ++   +  ++++  +  NM  +   R P+V  L  +L  +L  R
Sbjct: 299 GLRIVIDCKRDANVESILNLFYKYTELQVYYNANMVAIVDQR-PKVCGLLEVLDAYLKFR 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTE 425
           +EV+  RS +R +  ++R+ IL+GL+ A  N+DEIIA+IR+ +       +       TE
Sbjct: 358 QEVVLNRSKYRYEQKEKRLHILEGLMKATSNLDEIIAVIRSSNNRSESRNNIMAEFGFTE 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AI++L+L  L   +   ++ E   L  E E +D ++N+     N I  E  E+KE 
Sbjct: 418 AQATAIVDLQLYRLSSTDINALRDEFAKLANELEYLDLVINNIDMLNNMIVKEFMEIKEA 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSA 542
           F         R +  E   ++      ++I  E + V +S  G+++ +   S        
Sbjct: 478 FDTP------RRSVIEAEISELEVDHLSLITNEAVMVTVSRDGYLKKVSLRSYGSSQKDV 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQ 600
           +   + D    +    TTD ++ +++ G+   +     +    R  G  I   +  + N+
Sbjct: 532 IALMDEDMPVFSSEVETTDYLVFVTSRGRYGMILVHEIDEARWRDTGSHINQYMKCDPNE 591

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLVVKV 656
            I++ F    +D+   ++  ++ G       SE+           +K+   +++   V  
Sbjct: 592 KIISVFTLKSFDTYRFIVTSTASGMIKKTAISELEVKRTNRLYDVMKLGKHDELVGAVIT 651

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           + D H+ +V +  + +   + +I  +  R KGV     K      V    + +    +  
Sbjct: 652 SNDEHLLLVSKEGQCMRLDLAEINPIGLRAKGVIGMKLKLNDRV-VSTMGLSDESEVVFV 710

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           + R   +        +  R   G+ + K
Sbjct: 711 SDRFQMKRIKAQDIAINNRATQGTSIVK 738


>gi|323452177|gb|EGB08052.1| hypothetical protein AURANDRAFT_53761 [Aureococcus anophagefferens]
          Length = 915

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 231/792 (29%), Positives = 377/792 (47%), Gaps = 65/792 (8%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             + L   L E ++ YA+STI  RA+PD RDG KPVHRRI+ AM E+ L  G  ++K AR
Sbjct: 65  IPIELEAELSESFMKYAMSTILGRALPDARDGLKPVHRRILFAMRELNLTPGTPYRKCAR 124

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VGEV+GK HPHGD SVYD+LVR+AQ FV    L+ G GNFG++D D  AA RYTE ++T
Sbjct: 125 VVGEVLGKFHPHGDNSVYDALVRMAQDFVMSARLVDGHGNFGSVDADPPAAMRYTECKLT 184

Query: 138 QVA-ELILQGVDED------------AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           + A E +L G D              +V+F D ++  + EP V P++ P LL NG +GIA
Sbjct: 185 KFAYEALLNGDDLGKANRGEPLAGGVSVNFSDNFDASEMEPDVLPARVPVLLVNGAAGIA 244

Query: 185 VGMATSIPSHNVQEICEAA----LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           VGMATSIP HN+ E+C+AA     A     + S ++L   +  PDFPTGG ++     + 
Sbjct: 245 VGMATSIPPHNLGEVCDAALVVARAAKRGAKASDDELSVALPAPDFPTGG-LIMGTTGVA 303

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  G+G   +RA+   E+V  G   IV TE+PYQV KS L+ K A+ I A+RI  + D
Sbjct: 304 RAYATGQGSIVIRAKTHFEKVRSGRNAIVATELPYQVIKSELLAKTADAINARRIEGIAD 363

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--------RVP 352
           +RDES  +   V+F   R    ++++ ++F  + ++T FP N+  +           R P
Sbjct: 364 LRDESGREGTRVVFELKRDAQAEIVLSNLFKSTRLQTSFPANIVAVDHALNDDGDDVRSP 423

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
             M L   L+ WL+ R + +  R++   +    R+ I++GL +A  N+D ++A+IR  D 
Sbjct: 424 VRMTLRYALERWLSFRFDCVRLRAAHSERRAAARLHIVEGLCLATANVDAVVALIRASDA 483

Query: 413 PKPVM---------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           P              +  +L+E+Q  A+L L L  L  LE  ++ SE  +L  + E +  
Sbjct: 484 PADAKAKLVEGGAIPAMGALSEDQASAVLALTLSRLTTLEADKLDSERKDLEVKLEGLRK 543

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           L++     ++ +  E+  +K+ +        RR+        D     + +IE     V+
Sbjct: 544 LMSEDAAVYDAVVDEVAAIKKAYPTP-----RRSEIV--FDGDAELRDEDVIENARSAVL 596

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLK-----IALHAHTTDRILLLSTDGKAYTLPAG 578
           ++  G+++          +   +  ++L+       +  H  D +L ++  G AY + A 
Sbjct: 597 VARDGYVKRTSLEEFGAQSRGGRGRNALQGGTLRHLVTCHDHDTLLCIADTGVAYGVRAF 656

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFVY------------DSTCKLLVVSSKGNAF 624
           N+        G  +  ++ ++ +  I                  D    L+V++  G   
Sbjct: 657 NVPQASRAARGVPVPSVLPVDRSTRIKGLLAVAHDTLQNPKPGDDDELFLVVLTRNGLVK 716

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEM 681
               +     T +G   +K+   + +         D + +      +  F+ D   +  M
Sbjct: 717 KTPLAAFKGLTSRGLIAIKLGEGDAVTHARLCRASDSLILATAAGMVTRFAADDSELRSM 776

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           SR  +GVR  + +DG     +     +    +      Y +          KRGG+G   
Sbjct: 777 SRTTRGVRAMNLRDGDAIVKMDVAGGDHSHVLVLTAEGYGKRVALADLRSQKRGGMGVSA 836

Query: 741 PKGFPRSGKFLS 752
            K   +    +S
Sbjct: 837 IKFKKKGDDLVS 848


>gi|194097827|ref|YP_002000872.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae NCCP11945]
 gi|193933117|gb|ACF28941.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae NCCP11945]
          Length = 767

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 263/767 (34%), Positives = 404/767 (52%), Gaps = 43/767 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQPHASHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD+S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDR 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL
Sbjct: 421 VIRESDDPKADLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   I  E++   + F  +     RRT   E  RA            EPIT+++S
Sbjct: 481 GDENEKRKLIIKEMQADMKQFGDA-----RRTLVEEAGRAVL----TQTAADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   
Sbjct: 592 DGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTAD 651

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   V V           +       + L F I ++  M++GKG+++     G   
Sbjct: 652 SGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESM 711

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
                     +       R            +     KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIE---AKRGKKGRLLP 755


>gi|322411913|gb|EFY02821.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 819

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 214/747 (28%), Positives = 384/747 (51%), Gaps = 26/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P+ S+EKL+E++ GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGG-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  
Sbjct: 301 ELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIE 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E ++L      + ++++     +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDIITLQNEENDLRELITTLSAIVSDEATMYNVMKRELREVKKKFANP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+++     S +   L  +  ++ 
Sbjct: 478 ----RLSELQAESQTIEIDIASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L     A TT+ +LL +T G     P   L   R       L   +++          
Sbjct: 534 DDLIFVKQAKTTEHLLLFTTLGNVIYRPIYELTDLRWKDIGEHLSQTISNFATDEEILYA 593

Query: 609 D-----STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
           D          L V+  G     E  E+        K   ++K+   ++++  +  +  +
Sbjct: 594 DIVTSFDQGLYLAVTQNGFTKRFERQELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVME 653

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V      L FS   +P    +  GV+  + K+     V  F +    ++     R 
Sbjct: 654 DLLLVTYYGYALRFSSQDVPIQGLKSSGVKGTNLKNEDKL-VSAFSVTSN-SFFVLTQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           R   G LV +   
Sbjct: 712 ALKRMAVDDIPQTSRANRGLLVLRELK 738


>gi|116629642|ref|YP_814814.1| DNA topoisomerase IV subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238854273|ref|ZP_04644617.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 202-4]
 gi|282851153|ref|ZP_06260520.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 224-1]
 gi|311110715|ref|ZP_07712112.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri MV-22]
 gi|116095224|gb|ABJ60376.1| DNA topoisomerase IV subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238833084|gb|EEQ25377.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 202-4]
 gi|282557685|gb|EFB63280.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 224-1]
 gi|311065869|gb|EFQ46209.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri MV-22]
          Length = 826

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 210/755 (27%), Positives = 383/755 (50%), Gaps = 30/755 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +   +
Sbjct: 4   TTERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA RYT
Sbjct: 64  KKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT IP
Sbjct: 124 ESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +AA+ L+ +P+ + + L+E++ GPDFPTGGI++   + I E+Y  GRG  +V
Sbjct: 184 PHNLAEVIDAAVYLLKHPDATTDDLMEFVKGPDFPTGGIVL-GTKGIKEAYETGRGRIQV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  ++++      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+      +
Sbjct: 243 RSKTTIQDIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H+++V+
Sbjct: 303 VIELKKGADSQNILNYLFKNTDLQVSYNFNMVAID-RMTPVQVGLKRILSSYLTHKKDVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            +R+ F ++   +R+EI++GL+ A   +D++I  IR+    K    +   ++  T NQ +
Sbjct: 362 TKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKNNLIAKYEFTPNQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  Q+K E   L  + +K + +L+  +     +  E+  VK+ F   
Sbjct: 422 AIVSLQLYRLTNTDVNQLKQEQTELNKKIDKFNEILSDNQVLEKVVVKELNAVKKEFGSP 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T      A     ++A++  E + V++S  G+++     S    D S     
Sbjct: 482 ------RRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSIRSFQSTDTSDNGLP 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +       T D + + +  G     P         +  G+ +   I L+ +++I+ 
Sbjct: 536 DGDKVIFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEEIIR 595

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE----KMKLVV 654
            F  +        L+ ++ G    V  +++        +  T +K+ S+E    ++  V 
Sbjct: 596 VFEINDLKANLNFLIATNDGYIKQVTLADLQPTRTYKSRAITAIKLKSKESKVVRIDQVK 655

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI- 712
             +   + ++      + F I +IP    +  GV+  + KD            + +  I 
Sbjct: 656 PDSKQEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKDNDYIVNYVLADPKYVDLIN 715

Query: 713 --DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 R   +     L     R   G LV +   
Sbjct: 716 IGIITQRGAFKQLKLNLINKVTRAKRGVLVLRELK 750


>gi|326803542|ref|YP_004321360.1| DNA topoisomerase IV, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651545|gb|AEA01728.1| DNA topoisomerase IV, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 818

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 214/762 (28%), Positives = 389/762 (51%), Gaps = 32/762 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ +SL   + +R+  Y+   I++RA+PD+RDG KPV RRI++AM   G     AF+KS
Sbjct: 4   DIQELSLDEVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYHDGNTSDHAFRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG VIG  HPHGD SVY+++VR++Q +  R PLI   GN G++DGD AAA RYTEAR
Sbjct: 64  AKTVGNVIGNYHPHGDSSVYEAMVRMSQAWKNRMPLIDMHGNNGSMDGDPAAAMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A+ +L+ +++D VD    +++ + EPVV P+ FPNLL NG+ GI+ G AT IP+HN
Sbjct: 124 LSKLADELLKDLNKDTVDTILNFDDTEEEPVVLPAGFPNLLVNGSQGISAGYATEIPTHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    ID+P+  +E L++Y+ GPDFPTGG I++ ++ ++++Y+ GRG   VRA+
Sbjct: 184 LGEVIDAVNYYIDHPKAKVETLMKYLPGPDFPTGG-IIQGKDQLIKAYKTGRGKVVVRAQ 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE +  G   IV+TE+P++V K+ L+ K+ EL + + I  + ++RDES      ++  
Sbjct: 243 TEVESLKAGRKQIVITELPFEVNKADLVRKMDELRLNRSIDGVMEVRDESDRSGLRIIVE 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D D +++  F  ++++  +  NM  ++  R P+ + L  I++ ++ HR++V+ RR
Sbjct: 303 LKKDADADQILQYYFKHTNLQINYNFNMVAINKQR-PEQVGLIAIIQAYIDHRKDVVSRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + + +     R  I+ GL+ A   +D++I IIRN    K    +    +  ++ Q +AI+
Sbjct: 362 TQYDLNKAQSRRHIVDGLIKAISILDQVITIIRNSSDKKDAKNNLISEYQFSQAQAEAIV 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  +L     +  ++L+        I  E++ +K+ ++     
Sbjct: 422 TLQLYRLTNTDITALQEEKLSLNEAINQYQAILSDETILMKLIQSELKAIKKAYATD--- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
              R T  E    +    ++ +I  E +  V++  G+I+     S   S           
Sbjct: 479 ---RLTKIEAEVEEIKIKKEFLIPDEEVVTVVTRGGYIKRSSLRSYQSSNFADLGLRDGD 535

Query: 553 IALHAHTT---DRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV 607
             L+       D ++L++  G     P   +     +  GE +   I +  ++ I+  + 
Sbjct: 536 HVLYLAAHSTLDNLVLITNKGNYIFQPVYEMQELRWKDLGEHLSQRIPIASDEKIIQVYP 595

Query: 608 Y--DSTCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSE-EKMKLVVKVTGD-- 659
           Y  DS   +++ + +G     + SE+        K    + +SS  +++     V     
Sbjct: 596 YAKDSQDTIVLATREGMIKQSKLSELKKIRGHKNKASQIMPLSSPLDEVVNCYLVNNQSD 655

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISD--VICFKICEGLTWI 712
                V +       L + I +I  +  R KGV   + KD       V   ++ E    +
Sbjct: 656 KQNGEVILFTALGFSLRYQISEINTVGLRAKGVISINLKDQDQVVNFVYQDQVDEDQQIL 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
            +  R Y +           R   G +V +    +  + + +
Sbjct: 716 LATQRGYMKRMRWRDIQTMTRAKRGLMVLREVKSKPHRLVQA 757


>gi|238855704|ref|ZP_04646001.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 269-3]
 gi|260664459|ref|ZP_05865311.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282932218|ref|ZP_06337665.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|313472143|ref|ZP_07812635.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 1153]
 gi|238831689|gb|EEQ24029.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 269-3]
 gi|239529512|gb|EEQ68513.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 1153]
 gi|260561524|gb|EEX27496.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281303668|gb|EFA95823.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
          Length = 826

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 211/755 (27%), Positives = 375/755 (49%), Gaps = 30/755 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM      +   FKK
Sbjct: 6   ERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYLDNNTYDKPFKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYTE+
Sbjct: 66  AAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +D+D V+    +++ + EP V P++FPNLL NG +GI+ G AT IP H
Sbjct: 126 RLSKISNHLLADIDKDTVNMVLNFDDTEYEPTVLPAQFPNLLVNGATGISAGYATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ +P+ S+  L++++ GPDFPTG I++   + I E+Y  GRG  +VR+
Sbjct: 186 NLAEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVL-GDKGIKEAYETGRGRIQVRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++++  G   IVVTEIP+ V K+ L++KI E+ + K I  + ++RDE+      ++ 
Sbjct: 245 KTSIQDIKAGRQQIVVTEIPFGVNKAFLVKKIDEIRLNKEIDGISEVRDETDRHGLSIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H   V+ +
Sbjct: 305 ELKKGADSQNILNYLFKSTDLQVSYSFNMVAIDHM-TPVQVGLKRILSSYLEHDEAVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R+EI++GL+ A   +D++I  IR        K  ++ +FS T  Q +AI
Sbjct: 364 RTQYDLKKAKARLEIIEGLIHALDILDDVIKTIRASKNKADAKNNIIEKFSFTPRQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E  +L  +    + LL   K    QI  E+  VK+ F     
Sbjct: 424 VSLQLYRLTNTDVNALQAEKSDLEEKIANYNLLLTDRKVLEKQIIKELNAVKKEFG---- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
              RRT       A     ++A++ +E + V++S  G+++     S    D S     + 
Sbjct: 480 -SDRRTKI-SSKTAKIEIDEKALVAEEDVRVLVSRDGYLKRSSLRSFQSTDDSENGLPDF 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D +       T   + L +  G     P         +  G+ +   + L+ ++ IV+ F
Sbjct: 538 DKVVFEKTMSTLTNLYLFTNKGNVIFRPVHELVEAKWKEPGQHLSQELGLDTDEQIVSVF 597

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEK----MKLVVKV 656
                D     ++ ++ G    +  ++I        +    +K+  +      ++ VV  
Sbjct: 598 ELAKLDEKLNFVLATNDGYIKQLALADIQPTRTYKSRAMIAMKLKQDTSRVIHVEGVVPD 657

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI--- 712
           T   + +       + + I +IP    R  GV+  + KD            + L  +   
Sbjct: 658 TKKEITLFTNQAYAVRYDISEIPTSGARAAGVKSVNLKDDDYVVDYVTVDPKYLNLMKLG 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               R   +     L     R   G LV +   ++
Sbjct: 718 IITQRGAFKEFKYELINKVSRAKRGVLVLRELKKN 752


>gi|154795735|gb|ABS86855.1| gyrase A [Mycobacterium avium subsp. paratuberculosis]
          Length = 718

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 199/703 (28%), Positives = 335/703 (47%), Gaps = 20/703 (2%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
              +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  A
Sbjct: 1   PDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGM
Sbjct: 61  AMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGM 120

Query: 188 ATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AT+IP HN+ E+ EA          + E ++  ++E + GPDFPT G ++   + I ++Y
Sbjct: 121 ATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSG-LIVGTQGIADAY 179

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  R+R    VEE  RG   +V+TE+PYQV     I  IA+ +   ++  + +I D
Sbjct: 180 KTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAKQVRDGKLAGISNIED 239

Query: 304 E-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           + S      ++    R     +++ +++  + ++T F  NM  +    VP+ + LD +++
Sbjct: 240 QSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVD-GVPRTLRLDQLIR 298

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
            ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     +  ++ 
Sbjct: 299 HYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQGLIE 358

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+
Sbjct: 359 LLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL 418

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E+ E    +                  A                      RS K     
Sbjct: 419 AEIVEKHGDARRTRIVAADGDVSDEDLIAREDXXXXXXXXXXXXXXXXXXYRSQKRGGKG 478

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           +     K+ D ++      T D IL  +T G+ Y   A  L        G+ +  L+   
Sbjct: 479 VQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQ 538

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I        Y+    L++ +  G     + ++  +N   G   + +   +++   V
Sbjct: 539 PEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELVGAV 598

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT 710
             +  D + +V  N + + FS     +  M R   GV+   +        +   + EG  
Sbjct: 599 LCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDYLLSLNV-VREGTY 657

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +    Y +        +  RGG G L      R G+ + +
Sbjct: 658 LLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 700


>gi|294507491|ref|YP_003571549.1| DNA gyrase subunit A [Salinibacter ruber M8]
 gi|294343819|emb|CBH24597.1| DNA gyrase subunit A [Salinibacter ruber M8]
          Length = 777

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/767 (32%), Positives = 400/767 (52%), Gaps = 56/767 (7%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE-MGLDFGAAFKKSA 76
           + + L     ERYL YALS I  RA+PD+RDG KPV RRI+ AM + + L      +KSA
Sbjct: 5   ETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGE +GK HPHGD+++YD++VR+AQ F  R PL+ G GNFG++DGDSAAA RYTEA++
Sbjct: 65  TVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAKL 124

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +L+G+ ++ VD+RD ++    EPVV P++ PNLL NG SGIAVGMAT+IP HN+
Sbjct: 125 QPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHNL 184

Query: 197 QEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
            E+ +AAL +I+ PE+     + ++I GPDFPTGG I+ +++ + E Y  G G   +R  
Sbjct: 185 GEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRGA 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           +      +G    ++  +PY V KS+++E+IA+ I  + +P L ++RDES +DVRIVL  
Sbjct: 245 YR----TKGKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDESTDDVRIVLEL 300

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-----MGRVPQVMPLDGILKEWLAHRRE 370
           K  S D +  M  +F  + ++ RF +N+  L        + P+ + L  IL+ +L  R +
Sbjct: 301 KRGS-DTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RR    +  ++ R+ IL+G    +  +DE I IIR           ++ RF L E Q
Sbjct: 360 VVTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHRFQLDEEQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL  +L  L ++E   I+ EL    A  E+I  LL+    +W  +  E++++++ ++
Sbjct: 420 TDAILETQLYKLSQMEIEAIRDELGEKRARAEEIRRLLDDEDARWGIVKDELQDIRDEYT 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+T      AD    ++  I  E + V+++  GW++   ++S DL A+  ++
Sbjct: 480 DE-----RRSTLV-GPEADMEYTEEDYIVDEDVHVIVTRDGWVKRQGTYS-DLDAIRTRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD +  AL   T   +   +  G  YT     + S  G+G+ +Q L   +  + +V    
Sbjct: 533 GDEVGWALAGSTRATVGFFTNYGTCYTTRITEIPSTTGYGDPVQKLFSFDDGEHVVGVVS 592

Query: 608 YDS---------------------------TCKLLVVSSKGNAFIVEESEIIANT-RKGK 639
           +D                               ++ +S  G A        +  +   G+
Sbjct: 593 FDDRALPDPVPAEPSEQGELFDPDDPDAPDQPYVVAISKGGQATRFTLDGYLEPSISTGR 652

Query: 640 TFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPE-MSRGKGVRLQSYKDGG- 696
            ++++   +++  V    GD  + +   + + L+F + Q+       KGVR    +D   
Sbjct: 653 KYMRLEDGDEVARVHLARGDENICLASHDGRALVFPVHQVSVYKGPAKGVRAIRLEDNDR 712

Query: 697 -ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            +   +  +  +GLT   + GR               RG  G+LV K
Sbjct: 713 VLDFALSTRARDGLTVETNNGREEIVRTTKFD--ATNRGAKGTLVIK 757


>gi|162606026|ref|XP_001713528.1| DNA gyrase A-subunit [Guillardia theta]
 gi|13794448|gb|AAK39823.1|AF165818_31 DNA gyrase A-subunit [Guillardia theta]
          Length = 877

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 223/761 (29%), Positives = 370/761 (48%), Gaps = 23/761 (3%)

Query: 2   GVDNISNSNTLVEE--NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
             +N S       +   +    L+  + + Y+ YALS I  RA+PD+RDG KPVHRRI+ 
Sbjct: 48  SENNGSIKVKYTNDKTRIINTELQNEMAKSYMEYALSVIYGRALPDIRDGLKPVHRRILF 107

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM E+ L   A ++K AR+VGEV+GK HPHGD +VYDSLVR++Q F  R  LI G GNFG
Sbjct: 108 AMYELNLVPEAPYRKCARVVGEVLGKYHPHGDTAVYDSLVRMSQEFSMRKVLILGHGNFG 167

Query: 120 NIDGDSAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           +ID D  AA RYTE +++ ++ + +L+ +D   V++   ++    EP + PS  P++L N
Sbjct: 168 SIDHDPPAAMRYTECKLSNLSVDTLLKELDFKTVEYVYNFDGSSIEPSIMPSVIPSILLN 227

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+SGIAVGMATSIP HN+ EI  + LALIDN  I+ ++L++Y+  PDFPTGG ++    S
Sbjct: 228 GSSGIAVGMATSIPPHNLGEIVRSCLALIDNYNITNQELIKYLPCPDFPTGG-LIIGNNS 286

Query: 239 IVESYRLGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
             + Y  G     +R +  VE          + +++TEIP+Q+ KS LI K+A+L+ +K 
Sbjct: 287 CKDLYEKGISSIILRGKINVEFSKSVKKVSKYNLIITEIPFQINKSMLIAKLADLVNSKI 346

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + DIRDES      ++    R  DP  +++ I   S ++  F   M  +   + P +
Sbjct: 347 IQGISDIRDESDRKGIRIVIEIKRDYDPIKIVKIILKKSSLQITFSSYMLCIVD-KQPIL 405

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           + L  IL  +L  RR+++ +   F ++ I ++  ILKG+ I+   ID  I  I+      
Sbjct: 406 VNLKEILSLFLHFRRKIIRKNIKFELKNILKKKNILKGISISLEKIDLTIEKIKKSINNL 465

Query: 415 P--VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
               ++  F L++ Q +AILNL+LR L KLE  +I ++ +   +   ++  +L+S     
Sbjct: 466 EAKCILMEFGLSQEQSEAILNLQLRRLTKLESKKIDNDFEITKSSLNELKCILSSNILID 525

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT-LQQAMIEKEPITVVISNRGWIR 531
             I  +I+ + EI+          +    +    +     +++I      +         
Sbjct: 526 GIIKNQIKNISEIYGFPRKTLLINSINENIIEELETIENYESVIMITQYYIKKMFLESFE 585

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           S    +     L   +GD +      +  D ++ +S+ G AY +    +   + + +   
Sbjct: 586 SQTRGTKGKRGLIISDGDEISHFFSCNNRDDLIAISSGGIAYKIKVSRIPISKRNSKGTP 645

Query: 592 LLIDLNHNQ-----DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +L  L   +      I+     ++   L++++ KG       S     + +G   L +  
Sbjct: 646 ILSILKGLENNQISSIIATSNCETEKFLVLLTQKGLIKRTSISNFNNISSRGLIILTLDE 705

Query: 647 EEKMKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVIC 702
            + +K V K    D V +  +  KLL F+    ++    R  KG++        I     
Sbjct: 706 NDSLKWVRKCYNDDSVIISTKKGKLLRFNASQKELKSTGRTSKGIKSIDLDSNDIISDFD 765

Query: 703 FKICEGLT--WIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
               + +T   I      Y +        + KRG  G  V 
Sbjct: 766 IIPSQAITNFIILLTEMGYGKRIKVTELKIQKRGKKGIKVI 806



 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 60/188 (31%), Gaps = 10/188 (5%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                      S  L  L   E DSLK     +  D +++ +  GK     A        
Sbjct: 684 RTSISNFNNISSRGLIILTLDENDSLKWVRKCYNDDSVIISTKKGKLLRFNASQKELKST 743

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEI--IANTRKGK 639
              +  +      + DI++ F    +      +++++  G    ++ +E+      +KG 
Sbjct: 744 GRTSKGIKSIDLDSNDIISDFDIIPSQAITNFIILLTEMGYGKRIKVTELKIQKRGKKGI 803

Query: 640 TFLKVSS--EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
             + +     + +         + + +      ++   I  I    +  KG+ +Q   +G
Sbjct: 804 KVISLRENVNDYLISSRFCIENEEILISTSYGNVVKQKISDIAVQKKNSKGIIIQRLTEG 863

Query: 696 GISDVICF 703
                I  
Sbjct: 864 DKVSKISI 871



 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 45/101 (44%), Gaps = 3/101 (2%)

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ-LLIDLNHNQDIVTAFVYDSTCKLLVVS 618
           T+ I+LL+  G    +    L   +   + I+ + +  N N  ++++       ++L+ +
Sbjct: 773 TNFIILLTEMGYGKRIKVTELKIQKRGKKGIKVISLRENVNDYLISSRFCIENEEILIST 832

Query: 619 SKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVT 657
           S GN    + S+I    +  K  +  +++  +K+  +  + 
Sbjct: 833 SYGNVVKQKISDIAVQKKNSKGIIIQRLTEGDKVSKISIIN 873


>gi|83816214|ref|YP_445607.1| type II DNA topoisomerase, A subunit [Salinibacter ruber DSM 13855]
 gi|83757608|gb|ABC45721.1| type II DNA topoisomerase, A subunit [Salinibacter ruber DSM 13855]
          Length = 777

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/767 (32%), Positives = 399/767 (52%), Gaps = 56/767 (7%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE-MGLDFGAAFKKSA 76
           + + L     ERYL YALS I  RA+PD+RDG KPV RRI+ AM + + L      +KSA
Sbjct: 5   ETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGE +GK HPHGD+++YD++VR+AQ F  R PL+ G GNFG++DGDSAAA RYTEA++
Sbjct: 65  TVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAKL 124

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +L+G+ ++ VD+RD ++    EPVV P++ PNLL NG SGIAVGMAT+IP HN+
Sbjct: 125 QPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHNL 184

Query: 197 QEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
            E+ +AAL +I+ PE+     + ++I GPDFPTGG I+ +++ + E Y  G G   +R  
Sbjct: 185 GEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRGA 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           +      +G    ++  +PY V KS+++E+IA+ I  + +P L ++RDES +DVRIVL  
Sbjct: 245 YR----TKGKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDESTDDVRIVLEL 300

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-----MGRVPQVMPLDGILKEWLAHRRE 370
           K  S D +  M  +F  + ++ RF +N+  L        + P+ + L  IL+ +L  R +
Sbjct: 301 KRGS-DTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RR    +  ++ R+ IL+G    +  +DE I IIR           ++ RF L E Q
Sbjct: 360 VVTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHRFQLDEEQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL  +L  L ++E   I+ EL    A  E I  LL+    +W  +  E++++++ ++
Sbjct: 420 TDAILETQLYKLSQMEIEAIRDELGEKRARAEGIRRLLDDEDARWGIVKDELQDIRDEYT 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+T      AD    ++  I  E + V+++  GW++   ++S DL A+  ++
Sbjct: 480 DE-----RRSTLV-GPGADMEYTEEDYIVDEDVHVIVTRDGWVKRQGTYS-DLDAIRTRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD +  AL   T   +   +  G  YT     + S  G+G+ +Q L   +  + +V    
Sbjct: 533 GDEVGWALAGSTRATVGFFTNYGTCYTTRITEIPSTTGYGDPVQKLFSFDDGEHVVGVVS 592

Query: 608 YDS---------------------------TCKLLVVSSKGNAFIVEESEIIANT-RKGK 639
           +D                               ++ +S  G A        +  +   G+
Sbjct: 593 FDDRALPDPVPAEPSEQGELFDPDDPDAPDQPYVVAISKGGQATRFTLDGYLEPSISTGR 652

Query: 640 TFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPE-MSRGKGVRLQSYKDGG- 696
            ++++   +++  V    GD  + +   + + L+F + Q+       KGVR    +D   
Sbjct: 653 KYMRLEDGDEVARVHLARGDENICLASHDGRALVFPVHQVSVYKGPAKGVRAIRLEDNDR 712

Query: 697 -ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            +   +  +  +GLT   + GR               RG  G+LV K
Sbjct: 713 VLDFALSTRARDGLTVETNNGREEIVRTTKFD--ATNRGAKGTLVIK 757


>gi|34495530|ref|NP_899745.1| DNA topoisomerase IV subunit A [Chromobacterium violaceum ATCC
           12472]
 gi|34101385|gb|AAQ57754.1| DNA topoisomerase IV subunit A [Chromobacterium violaceum ATCC
           12472]
          Length = 783

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 263/749 (35%), Positives = 405/749 (54%), Gaps = 35/749 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L    E  YL YA+S +K RA+P++ DG KPV RRI++AM +MGL  GA   KSAR+V
Sbjct: 32  IPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMRDMGLVHGAKPVKSARVV 91

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GE++GK HPHGD S Y++LVR+AQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 92  GEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 151

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L  +D   VDF   Y+    EP + P++ P +L NG SGIAVG+AT IP HN+ E+
Sbjct: 152 AELLLSEIDMGTVDFVPNYDGAFEEPSLLPARLPMVLLNGASGIAVGLATEIPPHNLTEV 211

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +AL+D+PE+    L++Y+ GPDFP GG I+     I+ +Y  G+G  RVRA+W VE
Sbjct: 212 AAACVALLDDPELDTAALMQYVPGPDFPGGGQIITPVADILSAYETGKGSVRVRAKWEVE 271

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI------------------ 301
           ++ RG W  +VTE+P      +++ +I E    K     + +                  
Sbjct: 272 KLARGQWRAIVTELPPGSSAQKVLAEIEEATNPKLKAGKKQLSQDQQNLKKLMLDLLDRV 331

Query: 302 --RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
               +S   VR+V  PK+   DPD  M  +   + +E    LN+ ++ +   P    L  
Sbjct: 332 RDESDSESPVRLVFEPKSSRQDPDEFMNILLAQTSLEGNASLNLVMIGLDGRPGQKGLKP 391

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  RR  + RR + R+  +D+R+ IL+G +IA+++IDE+I +IR  D+PKP ++ 
Sbjct: 392 ILTEWIDFRRTTVTRRLAHRLAQVDKRIHILEGRMIAFIHIDEVIRVIRESDEPKPDLIK 451

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q + IL +RLR L +LE ++++ EL  L  E+E +  +L++       I  EI
Sbjct: 452 AFGLTEIQAEDILEIRLRQLARLEGFKLEKELSELREEREGLRHVLDTPDALTRLIRDEI 511

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +     +       +RRT      +A +  +       EP+T+++S +GWIR+   H+V+
Sbjct: 512 QADAAKYGD-----KRRTEI----KAAERAVLTQTTADEPVTLILSQKGWIRARVGHNVE 562

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           L  L FK+GD L   +   T    ++L  +G+AYT+    + +GRG G  +  L+DL   
Sbjct: 563 LETLSFKDGDGLAAVVETRTVWNAIVLDHNGRAYTIDPATVPTGRGDGVPVASLVDLQDG 622

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-----KLVV 654
                        + +V  S G  FI +  ++    + GK F+ + + E +         
Sbjct: 623 AKPAQLISGRDEDRFVVAGSGGYGFIAKIGDMAGRVKAGKAFITLDASETVLEPVKLPAA 682

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            +    +    ++ +LL F   ++ E+++G+G+ L +  DG     I            +
Sbjct: 683 PLEQLQLVAASDSDRLLAFPAAELKELAKGRGLMLMALDDGAALTAIGLVAGGKALLSTT 742

Query: 715 AGRS-YNRSENDLLGWLGKRGGVGSLVPK 742
           + R      +  L  + GKR   G L+PK
Sbjct: 743 SVRGKEAEEKLALEEFAGKRAKKGKLMPK 771


>gi|182435482|ref|YP_001823201.1| DNA topoisomerase IV subunit A [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463998|dbj|BAG18518.1| putative A subunit of topoisomerase IV [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 818

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 228/772 (29%), Positives = 372/772 (48%), Gaps = 36/772 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI+  M+EMGL  
Sbjct: 11  PPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++   D  A
Sbjct: 71  DRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM     L+ + +DED VDF+  Y+ ++ EPVV P+ +PNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMADATSLMTEAIDEDTVDFQSNYDGQEREPVVLPAAYPNLLVNGVSGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     I ++Y  GR
Sbjct: 191 ATNMPPHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIV-GLGGIKDAYTAGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VE V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +  
Sbjct: 250 GSFKIRATVAVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVKDLTDR 309

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +L 
Sbjct: 310 AHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           HR EV+ RRS FR      R+ +++GLL+A L+IDE+I IIR+ D     K  +++ FSL
Sbjct: 369 HRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMAHFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q   IL+  LR L + +  +++SE D L  E + + ++L S  +    ++ E+  V 
Sbjct: 429 SEIQTQYILDTPLRRLTRFDRIELESERDKLSGEIDALTAILESDAELRKLVSSELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F        RRT   E + A  A++   + +     ++ S     R+  +  V++S  
Sbjct: 489 KKFGT-----DRRTVLLESAGAQIASVPLEVADDPCRVLLSSTGLLARTANAEPVEISED 543

Query: 544 HFKEGDSLK-IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--------EAIQLLI 594
             +    +   A+ A     +  +++ G+   L   +L                 I   +
Sbjct: 544 ARRTKHDVIVSAVAATARGDVGAVTSTGRMLRLSVIDLPQLPNTHAEPNLSGGAQISEFL 603

Query: 595 DLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            L  ++++V     D +   L + + +G    V         +     + +   +++   
Sbjct: 604 SLEADEELVCLTTLDESSPGLAIGTLQGVVKRVVPD--YPPNKDELEVISLKDGDRVVGA 661

Query: 654 --VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEGL 709
             ++   + +  +  + +LL +    +    R   G+       G  +            
Sbjct: 662 TELRTGEEDLVFITSDAQLLRYPAASVRPQGRPAGGMAGVKLAAGAEVLSFTAVDPASEA 721

Query: 710 TWIDSAGRSYN--------RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                AG            +           R   G    +        + +
Sbjct: 722 IVFTVAGSHGTLDDSVLTSKLTPFDQYPRKGRATGGVRCQRFLKGEDVLVFA 773


>gi|146320614|ref|YP_001200325.1| DNA topoisomerase IV subunit A [Streptococcus suis 98HAH33]
 gi|253751560|ref|YP_003024701.1| topoisomerase IV subunit A [Streptococcus suis SC84]
 gi|145691420|gb|ABP91925.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus suis 98HAH33]
 gi|251815849|emb|CAZ51459.1| topoisomerase IV subunit A [Streptococcus suis SC84]
          Length = 817

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 212/767 (27%), Positives = 385/767 (50%), Gaps = 49/767 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   +EKL+E++ GPDFPTG  I++  + I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGA-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RCEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  ++  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  
Sbjct: 301 ELKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNF-TPRQVGLQKILSSYIAHRREIIIA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENLKISYEFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L  + + + +++   +  +N +  E+REVK+ F     
Sbjct: 420 VTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+I+     S +   L  +  ++ 
Sbjct: 478 ----RLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L    +A TT  +LL +  G     P   L   R           L++ + N++I+ A
Sbjct: 534 DQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTNEEIIFA 593

Query: 606 FVYD--STCKLLVVSSKGNAFIVEESEIIA----NTRKGKTFLKVSS-EEKMKLVVKVTG 658
            + +         V+  G    VE  E        ++  K   K+   E+ +  V  V  
Sbjct: 594 ELVENFEEGTYFAVTKYGQIKRVERKEFTPWRTYKSKSTKYA-KLKDAEDVVITVSPVVL 652

Query: 659 DHVAVVGENRKLLIFSIDQIP-----------EMSRGKGVRLQSYKDGGISDVICFKICE 707
           D + ++ E    L F+I+++P                      + KD  +          
Sbjct: 653 DDIMLMTEKGYALRFNIEEVPIIGAKAAGAKAV----------NLKDEDVVAAAFISNTS 702

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
            +  +    R   +        +  R   G  V +    +  +  ++
Sbjct: 703 SVYLL--TQRGSLKRMATEEIPVTSRAKRGLQVLRELKAKPHRVFAA 747


>gi|256851123|ref|ZP_05556512.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260660547|ref|ZP_05861462.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282932238|ref|ZP_06337682.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|297205988|ref|ZP_06923383.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
 gi|256616185|gb|EEU21373.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260548269|gb|EEX24244.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281303633|gb|EFA95791.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|297149114|gb|EFH29412.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
          Length = 826

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 210/755 (27%), Positives = 375/755 (49%), Gaps = 30/755 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM      F   FKK
Sbjct: 6   ERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYLDNNTFDKPFKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYTE+
Sbjct: 66  AAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +D+D V+    +++ + EP V P++FPNLL NG +GI+ G AT IP H
Sbjct: 126 RLSKISNHLLADIDKDTVNMVLNFDDTEYEPTVLPAQFPNLLVNGATGISAGYATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ +P  S+  L++++ GPDFPTG I++   + I E+Y  GRG  +VRA
Sbjct: 186 NLAEVIDATIYLLKHPNASLADLMQFVKGPDFPTGAIVL-GDKGIKEAYESGRGRIQVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++++  G   IVVTEIP+ V K+ L++KI E+ + K I  + ++RDE+      ++ 
Sbjct: 245 KTSIQDIKAGRQQIVVTEIPFGVNKAFLVKKIDEIRLNKEIDGISEVRDETDRHGLSIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+ +
Sbjct: 305 ELKKGADSQNILNYLFKSTDLQVSYSFNMVAIDHM-TPVQVGLKRILSSYLEHDADVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + +     R+EI++GL+ A   +D++I  IR        K  ++ +FS T  Q +AI
Sbjct: 364 RTKYDLSKAKARLEIIEGLIHALDILDDVIKTIRASKNKADAKNNIIDKFSFTPRQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E  +L  +    D LL   K    QI  E+  VK+ F     
Sbjct: 424 VSLQLYRLTNTDVNALQAEKSDLEEKIASYDLLLTDRKVLEKQIIKELNAVKKEFGSE-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF---KEG 548
               R T      A     ++A++ +E + V++S  G+++     S   +        + 
Sbjct: 482 ----RRTKISSKTAKIEIDEKALVAEEDVRVLVSRDGYLKRSSLRSFQSTNDSENGLPDF 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D +       T   + + +  G     P         +  G+ +   + L+ ++ I+  F
Sbjct: 538 DKVVFEKTMSTLTNLYIFTNKGNVIFRPVHELVEAKWKEPGQHLSQELGLDTDEQIIAVF 597

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE-KMKLVVKVTGD 659
                DS    L+ ++ G    +  ++I        +    +K+     ++  V  ++ D
Sbjct: 598 ELAKLDSRLNFLLATNDGYIKQLALADIQPTRTYKSRAMIAMKLKETASRVVRVEMISPD 657

Query: 660 ---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI--- 712
               + +   +   + + +++IP    R  GV+  + KD          + E L  +   
Sbjct: 658 TKKEITLFTNHAYAVRYDVNEIPTSGARAAGVKSVNLKDDDFVVDYVTVLPEYLDMMKLG 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               R   +     L     R   G LV +   ++
Sbjct: 718 IVTQRGAFKEFKYELINKVSRAKRGVLVLRELKKN 752


>gi|300361707|ref|ZP_07057884.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
 gi|300354326|gb|EFJ70197.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
          Length = 826

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 209/755 (27%), Positives = 384/755 (50%), Gaps = 30/755 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +   +
Sbjct: 4   TTERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA RYT
Sbjct: 64  KKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT IP
Sbjct: 124 ESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +AA+ L+ +P+ + + L+E++ GPDFPTGGI++   + I E+Y  GRG  +V
Sbjct: 184 PHNLAEVIDAAVYLLKHPDATTDDLMEFVKGPDFPTGGIVL-GTKGIKEAYETGRGRIQV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  ++++      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+      +
Sbjct: 243 RSKTTIQDIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H+++V+
Sbjct: 303 VIELKKGADSQNILNYLFKNTDLQVSYNFNMVAID-RMTPVQVGLKRILSSYLTHKKDVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            +R+ F ++   +R+EI++GL+ A   +D++I  IR+    K    +   ++  T NQ +
Sbjct: 362 TKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKNAKNNLIAKYKFTPNQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  Q+K E   L  + +K + +L+  K     +  E+  VK+ F   
Sbjct: 422 AIVSLQLYRLTNTDVNQLKKEQTELNKKIDKFNEILSDNKVLEKVVVKELNAVKKEFGSP 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T      A     ++A++  E + V++S  G+++     S    D S     
Sbjct: 482 ------RRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSIRSFQSTDTSDNGLP 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +       T D + + +  G     P         +  G+ +   I L+++++I+ 
Sbjct: 536 DGDKVIFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDNDEEIIR 595

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE----KMKLVV 654
            F  +    +   L+ ++ G    V  +++        +  T +K+  ++    ++  V 
Sbjct: 596 VFEINDLKASLNFLIATNDGYIKQVTLADLQPTRTYKSRAITAIKLKCKDSKVVRIDQVK 655

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI- 712
             +   + ++      + F I +IP    +  GV+  + KD            + +  I 
Sbjct: 656 PDSKQEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKDNDYIVNYVLADPKYVDLIN 715

Query: 713 --DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 R   +     L     R   G LV +   
Sbjct: 716 IGIITQRGAFKQLKLNLINKVTRAKRGVLVLRELK 750


>gi|169350468|ref|ZP_02867406.1| hypothetical protein CLOSPI_01236 [Clostridium spiroforme DSM 1552]
 gi|169292788|gb|EDS74921.1| hypothetical protein CLOSPI_01236 [Clostridium spiroforme DSM 1552]
          Length = 849

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 192/744 (25%), Positives = 380/744 (51%), Gaps = 24/744 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++ +  +SL   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M + G      +
Sbjct: 1   MDKKIV-MSLETIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLATKPY 59

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ +G VIG  HPHGD SVYD++VRL+Q +  R PLI  QGN G+ID D AAA RYT
Sbjct: 60  RKSAKTIGNVIGNYHPHGDTSVYDAMVRLSQDWKMRAPLIDMQGNNGSIDNDPAAAMRYT 119

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +D+D V     +++ + EP V P+ +PNLL NG +GI+ G AT IP
Sbjct: 120 EARLSPIAVELLKDLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIP 179

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+ +A +  I +   S+EK++E+I GPDFPTG I+   +E I+ +++ G+G   V
Sbjct: 180 PHNLEEVIDATIYRIKHSNCSLEKIMEFIKGPDFPTGAIVE-GKEGILNAFKHGKGKVIV 238

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  + E       IV++EIPY+V K+ L+ KI E+   + +  + ++RDES  +   +
Sbjct: 239 RSKTEIIEEK-NMNKIVISEIPYEVNKAELVRKIDEIHFNRNLEGIIEVRDESDRNGLRI 297

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    + +     +  ++  +D++  +     V    + P +M +  IL  ++ H+ +V+
Sbjct: 298 VIDLKKDISVQNTLNYLYKNTDLQKNYNY-NMVAIKDKRPVLMGILDILDGYIDHQIDVV 356

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            R S + +     R  I++GL+ A   +D+++  IR        K  +++++  +E Q +
Sbjct: 357 TRSSIYDLNKAKDRKHIVEGLIKAISILDDVVKTIRESKDKSDAKKNLMAKYEFSEKQAE 416

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +++E + L  + + ++++L+S +     I  +++ +K+ +   
Sbjct: 417 AIVMLQLYRLTNTDIKTLENENEELNEKIKYLNTILDSDEVLRKVIIDQLKNIKKKYPMP 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R +       +    ++AMI  E + + I+  G+I+ + + S+   + +    K
Sbjct: 477 ------RLSMIRDKIQEVKIDEKAMILSEDVNISITRDGYIKRISNRSIKASEKTPFGKK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVT 604
           E D L     A+T D +LL S  G    +P         +  G+ +  L+ ++ ++ I+ 
Sbjct: 531 ENDYLVSMYKANTLDHLLLFSDAGNYLFIPVHKIEEFKWKDPGKHVSYLVKMDSSEKIIA 590

Query: 605 AFVYDSTC---KLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           + +         +++ +  G        +  +    K    + + + +K+  V     D 
Sbjct: 591 SILVKDFNLPLYVMIATKNGQIKRTLLKDFEVTRYSKPLKCIGLKNGDKVVDVKLTNNDQ 650

Query: 661 -VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +  +     ++S  ++  +  +  G++  + KD  +  +  F      + +  +   
Sbjct: 651 GIILTTKKGYGALYSEQEVSIVGIKALGIKAINLKDDELVSLDTFDPMVDHSLVLISDSG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +           R   G ++ K
Sbjct: 711 GIKRIKISDIKPCNRATKGVMLFK 734


>gi|332970389|gb|EGK09381.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella kingae ATCC
           23330]
          Length = 757

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 265/749 (35%), Positives = 415/749 (55%), Gaps = 37/749 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E  YL YA+S +K RA+P ++DG KPV RRI+ AM +MGL  GA   KSAR+V
Sbjct: 8   LNLADYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLAHGAKPVKSARVV 67

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +
Sbjct: 68  GEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPI 127

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L  +++  VDF   Y+    EPV  P++ P +L NG SGIAVGMAT IPSHN+ E+
Sbjct: 128 AELLLSEINQGTVDFVPNYDGAFDEPVSLPARLPMVLLNGASGIAVGMATEIPSHNLNEV 187

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +AA+ L+  P + +  L++Y   PDF  GG I+ S + +   Y+ G+G  RVRAR+ ++
Sbjct: 188 TQAAIVLLKKPNLEVADLMKYCPAPDFAGGGHIITSAKDLQNIYQSGKGSVRVRARYEID 247

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDI 301
           ++ RG W ++V+E+P     ++++ +I E    K                      +E +
Sbjct: 248 KMARGQWRVIVSELPPNTSAAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIEKV 307

Query: 302 RDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES     VR+V  PK+  ++P+  + ++   + +E    +N+ ++ M   P    L  
Sbjct: 308 RDESDSEHPVRLVFEPKSSRVEPEHFINTLMAQTSLEGNVSINLVMMGMDNRPAQKNLKT 367

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL+EWL +R   + RR   R+ A+++R+ IL+G +IA+L+IDEII +IR  D+PK  +++
Sbjct: 368 ILQEWLDYRVATVTRRLQHRLDAVEKRIHILEGRMIAFLHIDEIIKVIRESDEPKADLIA 427

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F+LTE Q + IL +RLR L +LE  +++SEL+ L  E+  +  LL     +   I  E+
Sbjct: 428 KFNLTEIQAEDILEIRLRQLARLEGIKLESELNELRDEQSSLQHLLADENDKKKLIIKEM 487

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +   + F        RRT       A +          EPIT+++S +GWIR+   H VD
Sbjct: 488 QADAKQFGDE-----RRTLV----EAAERATLTQTTADEPITLILSQKGWIRARAGHDVD 538

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           LS + FKEGD L+  L   T   +++L T G++YT+   ++  GRG G  +  LID+   
Sbjct: 539 LSQIAFKEGDDLQQVLETRTVQPVIVLDTLGRSYTIDPADVPKGRGDGVPVGSLIDIQAA 598

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--- 656
             ++T          L+ +S G  FI +  ++ +  + GKT + + S E   L  KV   
Sbjct: 599 ASVLTMIAGSVDEHYLLANSGGYGFICKLEDLHSRLKAGKTIMMLESGEVALLPEKVYLS 658

Query: 657 ----TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
                   + +     +LL F I ++  M++G+G++L S +D     ++        T  
Sbjct: 659 SLINPDCKIVLATAQNRLLAFPIGEMKIMAKGRGLQLISLQDDDKLVLMKMVNTPDYTLE 718

Query: 713 DSAGR-SYNRSENDLLGWLGKRGGVGSLV 740
               R   +     +   + KRG  G ++
Sbjct: 719 IVGKRSGVSHETLHVSDIVNKRGRKGKIL 747


>gi|326776119|ref|ZP_08235384.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656452|gb|EGE41298.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 818

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 228/772 (29%), Positives = 372/772 (48%), Gaps = 36/772 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI+  M+EMGL  
Sbjct: 11  PPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++   D  A
Sbjct: 71  DRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM     L+ + +DED VDF+  Y+ ++ EPVV P+ +PNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMADATSLMTEAIDEDTVDFQSNYDGQEREPVVLPAAYPNLLVNGVSGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     I ++Y  GR
Sbjct: 191 ATNMPPHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIV-GLGGIKDAYTAGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VE V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +  
Sbjct: 250 GSFKIRATVAVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVKDLTDR 309

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +L 
Sbjct: 310 AHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           HR EV+ RRS FR      R+ +++GLL+A L+IDE+I IIR+ D     K  +++ FSL
Sbjct: 369 HRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMAHFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q   IL+  LR L + +  +++SE D L  E + + ++L S  +    ++ E+  V 
Sbjct: 429 SEIQTQYILDTPLRRLTRFDRIELESERDKLSGEIDALTAILESDAELRKLVSSELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F        RRT   E + A  A++   + +     ++ S     R+  +  V++S  
Sbjct: 489 KKFGT-----DRRTVLLESAGAQIASVPLEVADDPCRVLLSSTGLLARTANAEPVEISED 543

Query: 544 HFKEGDSLK-IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--------EAIQLLI 594
             +    +   A+ A     +  +++ G+   L   +L                 I   +
Sbjct: 544 ARRTKHDVIVSAVAATARGDVGAVTSTGRMLRLSVIDLPQLPDTHAEPNLSGGAQISEFL 603

Query: 595 DLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            L  ++++V     D +   L + + +G    V         +     + +   +++   
Sbjct: 604 SLEADEELVCLTTLDESSPGLAIGTLQGVVKRVVPD--YPPNKDELEVISLKDGDRIVGA 661

Query: 654 --VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEGL 709
             ++   + +  +  + +LL +    +    R   G+       G  +            
Sbjct: 662 TELRTGEEDLVFITSDAQLLRYPAASVRPQGRPAGGMAGVKLAAGAEVLSFTAVDPASEA 721

Query: 710 TWIDSAGRSYN--------RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                AG            +           R   G    +        + +
Sbjct: 722 IVFTVAGSHGTLDDSVLTSKLTPFDQYPRKGRATGGVRCQRFLKGEDVLVFA 773


>gi|104773994|ref|YP_618974.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514010|ref|YP_812916.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423075|emb|CAI97796.1| DNA topoisomerase IV, subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093325|gb|ABJ58478.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 827

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 208/766 (27%), Positives = 382/766 (49%), Gaps = 32/766 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM   G     
Sbjct: 2   PETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA R
Sbjct: 62  PFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+ +++ ++L+ +D++ V     +++   EP V P++FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A + L+ +P+ S+E L+ ++ GPDFPTGG IV  ++ + ++Y+ G+G  
Sbjct: 182 IPPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGG-IVMGKKGLRDAYKTGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VRA+  +EE+      IVVTEIPY V K++L++KI E+ +++ +  + ++RDE+     
Sbjct: 241 QVRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D   ++  +   +D++  +  NM  ++    P  + L  IL  +L H  E
Sbjct: 301 SIVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHM-TPVQVGLKRILAAYLEHEEE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ +R+ F ++    R+EI++GL+ A   +D++I +IR        K  +V+ F+ T+ Q
Sbjct: 360 VVTKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +   +++E + L  +    + +L   K    +I  E+R VK+ F 
Sbjct: 420 AEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILADSKVLQKEIIKELRAVKKEFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+   +   A     ++A+I +E + V+IS  G+I+     S   +      
Sbjct: 480 -----SDRRSEISD-ETARVEVDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNG 533

Query: 548 GDSLKIALHAHTTDR---ILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDI 602
                  ++  +      + L +  G     P         +  G+ +   + L  ++ I
Sbjct: 534 LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESI 593

Query: 603 VTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE-KMKLVV 654
           +  F      D     L+ ++ G    V  +++        +    +K+  E+ ++  V 
Sbjct: 594 IRVFALEALDDPDLAFLLATNDGFIKQVALADLQPTRTYKSRAIMAMKMKGEDSRVITVD 653

Query: 655 KVTGD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710
                    + +       L + ID++P++  R  GV+  + K+            +   
Sbjct: 654 LAKTSEKREITLFTNQAFALKYDIDEVPQVGARAAGVKSINLKEDDYVVACLVTDPQYED 713

Query: 711 WI---DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
            +       R   +     L     R   G LV +    +  + ++
Sbjct: 714 LLKVGLVTQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKTKPHRIVA 759


>gi|319761822|ref|YP_004125759.1| DNA topoisomerase iv, a subunit [Alicycliphilus denitrificans BC]
 gi|330826318|ref|YP_004389621.1| DNA topoisomerase IV subunit A [Alicycliphilus denitrificans K601]
 gi|317116383|gb|ADU98871.1| DNA topoisomerase IV, A subunit [Alicycliphilus denitrificans BC]
 gi|329311690|gb|AEB86105.1| DNA topoisomerase IV, A subunit [Alicycliphilus denitrificans K601]
          Length = 780

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 276/777 (35%), Positives = 419/777 (53%), Gaps = 56/777 (7%)

Query: 6   ISNSNTLV---EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +S+   L     +   A+ L    +  YL YALS +K RA+PD+ DG KPV RRI++AM 
Sbjct: 1   MSDQPVLDFSGADAGDALGLGGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAMD 60

Query: 63  EMGLDFGA----AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
            MGL +         KSAR+VG+V+G+ HPHGDQS YD+LVRLAQ F QRYPLI GQGNF
Sbjct: 61  RMGLSYSGNAPAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+ DGD AAA RYTEAR+T++A L+L  +D+  VDF   Y+    EP   P++ P  L N
Sbjct: 121 GSRDGDGAAAMRYTEARLTKIAGLLLGEIDQGTVDFVPNYDGSTQEPRQLPARLPFALLN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G SGIAVG+AT IPSHN++E+ +A +AL+ NP +S E+L   + GPD+P GG I+ S   
Sbjct: 181 GASGIAVGLATEIPSHNLREVADACVALVKNPRLSDEELFALVPGPDYPGGGQIISSVAD 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL- 297
           I ++YR GRG  +VRARW +E++ RG W +VVTE+P  V   +++E+I ++   K     
Sbjct: 241 IQDAYRGGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEDITNPKVKAGK 300

Query: 298 -----------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
                            L+ +RDES     VRIV  PK   +    L+ ++   + +ET 
Sbjct: 301 KALTQEQQQLKASMLAVLDGVRDESSKDAPVRIVFEPKTGRVPQQELVTALLGHTSLETS 360

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
            P+N+ ++ +   P    L  +L EW+  R++ + RRS  R+  +  R+ IL+G  +  L
Sbjct: 361 APINLTMVGLDGRPVQKSLRQMLAEWVEFRQQTITRRSQHRLAKVLDRIHILEGRQLVLL 420

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           NIDE+IAIIR  D PK  +++RFSL+E Q + IL +RLR L +LE  +I+ EL  L  E+
Sbjct: 421 NIDEVIAIIRAADDPKAALMARFSLSERQAEDILEIRLRQLARLEAIKIEQELSELRKEQ 480

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            +++ +L +       +  EI    + F+ +     RRT      + +K  + +  +  E
Sbjct: 481 GQLEDILANPASLRRLMVREIEADAKQFADA-----RRTLI----QEEKKVVAEVKVVDE 531

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P TVV+S +GW+R+ + H     +  FK GD L       T D++++  ++G+ Y++P  
Sbjct: 532 PTTVVVSQKGWVRTRQGHGHAADSFAFKAGDGLYGTFECRTVDQLIVFGSNGRLYSVPVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRG G+ +  LI+L     I   F      +LL+  S G  F+ +   +++  + G
Sbjct: 592 QLPGGRGDGQPVTTLIELEPGTQIAHYFAGPVQAQLLLAGSGGYGFVAQVEHMVSRNKGG 651

Query: 639 KTFLKVSSEEKMKLVVKVTG----------DHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
           K F+ +   E +     V G           HV       ++L F I ++ +M + G+G+
Sbjct: 652 KAFVALGEGETLCAPSHVAGTSASQPLAAATHVCCASAGGRILTFDIGELKQMDKGGRGL 711

Query: 688 RLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVGS 738
            L + +D   ++    +        I   GR   + E  L         G RG  G 
Sbjct: 712 MLIALEDKDSLAGAAAYTRS---VRIAGVGRGGRQREEQLEIRSLNNARGTRGRKGK 765


>gi|50365126|ref|YP_053551.1| DNA topoisomerase IV subunit A [Mesoplasma florum L1]
 gi|50363682|gb|AAT75667.1| DNA topoisomerase IV subunit A [Mesoplasma florum L1]
          Length = 908

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 218/760 (28%), Positives = 397/760 (52%), Gaps = 35/760 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I NSN   E+ + + +L   + ER+  YA   I+ERA+PD RDG KPV RRI++AM+E+ 
Sbjct: 5   IDNSNIESEKGIISYALEDLMGERFGRYAKYIIQERALPDARDGLKPVQRRILYAMNELN 64

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   +KKSAR+VGEVIGK HPHGD S+YD++VR++Q +    PLI  QGN G+IDGD+
Sbjct: 65  LTYDKPYKKSARVVGEVIGKYHPHGDTSIYDAMVRMSQWWKLGMPLIDMQGNNGSIDGDN 124

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++++L+L  ++++ V F   +++ + EP V PS FPN+L NG++GIA 
Sbjct: 125 AAAMRYTETRLAKISDLMLDDLNKNTVKFAPNFDDSEKEPTVLPSYFPNILVNGSTGIAA 184

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT++P HN+ EI +A + LI  P   I+ +LE + GPDFPTGG +   R  I +++  
Sbjct: 185 GYATNMPPHNLGEIIDATIKLIRTPNTRIDTILEIVKGPDFPTGGTVQ-GRNGIKDAFTT 243

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   V ++W  E+       I++ EIPY+V K  L++KI ++I A     + ++RDE+
Sbjct: 244 GKGKVIVNSKWHEEDNN-----IIIDEIPYEVVKQDLVKKIGDVIDANPGLGILEVRDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   +    +   + D + + +F  + +   +  N   +     P+ + +  ++  ++
Sbjct: 299 DRNGLRIAIDLSDKANLDTVRKFLFKSTPLSISYNYNNVAIVDL-QPKQLGIIELIHAYI 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
           AH +EV   R+ F +   ++R+EI+ GL+ A   +D++I++IR+          ++S+F 
Sbjct: 358 AHYKEVFTFRTQFDLNKAEKRLEIILGLIKAMSILDQVISVIRSSTNRSDAIENLISKFV 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AI+++RL  L   +  ++++E + L     K+ ++LNS +   N+I   +REV
Sbjct: 418 FSQPQAAAIVDMRLYRLTSTDVVKLQNEKEELDVNIAKLKAILNSEEVMDNEIINRLREV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ F         R +  E S  +    Q+ ++ +    + IS  G++++++S  +   D
Sbjct: 478 KKQFPTP------RRSIVEDSIENLDVEQKEVLVEHEYNLWISKDGYLKAIESKLISKND 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLN 597
            +    K  D    A        ++L++  G  Y++P     +   R  G  +  +  ++
Sbjct: 532 PAVFGRKPNDMWIAAGEVSNLQHLILVTNKGTYYSIPLYKLPMSKWRDMGVHVNTIATMD 591

Query: 598 HNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
            ++ IV+AFV         ++L+ S  GN   +   ++      +    +K+ + +++  
Sbjct: 592 PSEHIVSAFVVKDFAEALQQILITSKNGNIKRIPVKDLETKIFTRAFRIMKLDAVDEIVS 651

Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGL 709
              +T       ++  N   + + I+ IP      KGV+  + K+  I   +     +  
Sbjct: 652 ASLITSKTRTCGIITRNGYGVRYHIEDIPVQGTNSKGVKAANLKEDYIVAGLGLTSED-- 709

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP----KGFP 745
           T +    +   +   +    +  R   G  V     +G  
Sbjct: 710 TIMYLTEKDGVKKFRNEDLPIYIRPKRGIRVLPERKRGTE 749


>gi|300812416|ref|ZP_07092846.1| DNA topoisomerase IV, A subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496583|gb|EFK31675.1| DNA topoisomerase IV, A subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 827

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 207/766 (27%), Positives = 382/766 (49%), Gaps = 32/766 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM   G     
Sbjct: 2   PETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA R
Sbjct: 62  PFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+ +++ ++L+ +D++ V     +++   EP V P++FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A + L+ +P+ S+E L+ ++ GPDFPTGG IV  ++ + ++Y+ G+G  
Sbjct: 182 IPPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGG-IVMGKKGLRDAYKTGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VRA+  +EE+      IVVTEIPY V K++L++KI E+ +++ +  + ++RDE+     
Sbjct: 241 QVRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D   ++  +   +D++  +  NM  ++    P  + L  IL  +L H  E
Sbjct: 301 SIVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHM-TPVQVGLKRILAAYLEHEEE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ +R+ F ++    R+EI++GL+ A   +D++I +IR        K  +V+ F+ T+ Q
Sbjct: 360 VVTKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +   +++E + L  +    + +L   K    +I  E++ VK+ F 
Sbjct: 420 AEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILADPKVLQKEIIKELQAVKKEFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+   +   A     ++A+I +E + V+IS  G+I+     S   +      
Sbjct: 480 -----SDRRSEISD-ETARVEVDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNG 533

Query: 548 GDSLKIALHAHTTDR---ILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDI 602
                  ++  +      + L +  G     P         +  G+ +   + L  ++ I
Sbjct: 534 LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESI 593

Query: 603 VTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE-KMKLVV 654
           +  F      D     L+ ++ G    V  +++        +    +K+  E+ ++  V 
Sbjct: 594 IRVFALEALDDPNLAFLLATNDGFIKQVALADLQPTRTYKSRAIMAMKMKGEDSRVITVD 653

Query: 655 KVTGD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710
            V       + +       L + I ++P++  R  GV+  + K+            +   
Sbjct: 654 LVKTSEKREITLFTNQAFALKYDIGEVPQVGARAAGVKSINLKEDDYVVACLVTDPQYED 713

Query: 711 WI---DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
            +       R   +     L     R   G LV +    +  + ++
Sbjct: 714 LLKVGLVTQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKTKPHRIVA 759


>gi|314988112|gb|EFT32203.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA2]
 gi|314989917|gb|EFT34008.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA3]
          Length = 844

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 217/769 (28%), Positives = 374/769 (48%), Gaps = 38/769 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +    EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+   
Sbjct: 7   DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPD 66

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
               KSAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG++D    AA 
Sbjct: 67  RPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT
Sbjct: 126 RYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMAT 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+  A   ++D+P   +++++ ++ GPD PTGG I+   + I ++Y  GRG 
Sbjct: 186 NIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRII-GLDGIADAYCTGRGS 244

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
           F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D +   +
Sbjct: 245 FKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTN 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++      ++P+ L+E ++ L+ +E  F +N   L     P+ + L  +L+ +L HR
Sbjct: 305 GTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLV-EGQPRTLGLLEMLQVYLDHR 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            +V  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  ++  F L E
Sbjct: 364 LDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAVRTRLMGTFDLDE 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL+++LR L K    +++SE D L    E +  ++N   +    ++ E+ EV   
Sbjct: 424 VQANYILDMQLRRLTKFSTIELESERDELRERIEGLTLIVNDKAELRRVVSGELVEVSSK 483

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RRT     + +  A      +  +P  V++S  G +  + +     S    
Sbjct: 484 YGTP-----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLLARIDTADGLPSDGDR 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--------LLSGRGHGEAIQLLIDLN 597
              D +  +          ++++ G+   + A                 G  +  L+ L 
Sbjct: 539 ATHDVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLE 598

Query: 598 HNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
             +  +       +   L + +  G    V    +    ++    + + + +++   V++
Sbjct: 599 KGERALAVTSLSGAGPSLALGTRNGIVKRVNPELLG---KESWEVIGLKNGDEVVGAVEM 655

Query: 657 TGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             + + +  V +   LL F    +    R G GV     KD             G + + 
Sbjct: 656 GDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD--PVIFFGAAPRRGSSVVT 713

Query: 714 SA---------GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            A              +           R   G    +        + +
Sbjct: 714 VAASSPAAAGKEPGSIKLTPFDQYPPKGRATGGMRCQRFLKGETALVFA 762


>gi|239998315|ref|ZP_04718239.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
 gi|268594175|ref|ZP_06128342.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
 gi|268547564|gb|EEZ42982.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
          Length = 768

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 263/768 (34%), Positives = 403/768 (52%), Gaps = 44/768 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQPHASHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------- 297
           G+G  RVRAR+ +E++ RG W  ++VTE+P     ++++ +I E    K           
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQD 300

Query: 298 -----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
                      ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ 
Sbjct: 301 RLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLV 360

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           ++ +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I
Sbjct: 361 MMGLDNRPAQKNLKTILQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVI 420

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
            +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ L
Sbjct: 421 KVIRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIL 480

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L    ++   I  E++   + F  +     RRT   E  RA            EPIT+++
Sbjct: 481 LGDENEKRKLIIKEMQADMKQFGDA-----RRTLVEEAGRAVL----TQTAADEPITLIL 531

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           S +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GR
Sbjct: 532 SEKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGR 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +  
Sbjct: 592 GDGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTA 651

Query: 645 SSEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI 697
            S E +   V V           +       + L F I ++  M++GKG+++     G  
Sbjct: 652 DSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGES 711

Query: 698 SDVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
                      +       R            +     KRG  G L+P
Sbjct: 712 MTHTAVSSEPEILIESEGRRGAAHKDRLPVALIE---AKRGKKGRLLP 756


>gi|146318418|ref|YP_001198130.1| DNA topoisomerase IV subunit A [Streptococcus suis 05ZYH33]
 gi|145689224|gb|ABP89730.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus suis 05ZYH33]
          Length = 817

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 211/766 (27%), Positives = 384/766 (50%), Gaps = 47/766 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 122 RLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +ID+P   +EKL+E++ GPDFPTG  I++  + I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGA-IIQGADEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++  G   IV+TEIPY+V K+ L++KI ++ +  ++P + ++RDES      +  
Sbjct: 241 RCEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  ++  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  
Sbjct: 301 ELKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNF-TPRQVGLQKILSSYIAHRREIIIA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENLKISYEFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L  + + + +++   +  +N +  E+REVK+ F     
Sbjct: 420 VTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  +           ++I +E   V ++  G+I+     S +   L  +  ++ 
Sbjct: 478 ----RLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTA 605
           D L    +A TT  +LL +  G     P   L   R           L++ + N++I+ A
Sbjct: 534 DQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTNEEIIFA 593

Query: 606 FVYD--STCKLLVVSSKGNAFIVEESEIIA----NTRKGKTFLKVSSEEKMKLVVKVTGD 659
            + +         V+  G    VE  E        ++  K      +E+ +  V  V  D
Sbjct: 594 ELVENFEEGTYFAVTKYGQIKRVERKEFTPWRTYKSKSTKYAKLTDAEDVVITVSPVVLD 653

Query: 660 HVAVVGENRKLLIFSIDQIP-----------EMSRGKGVRLQSYKDGGISDVICFKICEG 708
            + ++ E    L F+I+++P                      + KD  +           
Sbjct: 654 DIMLMTEKGYALRFNIEEVPIIGAKAAGAKAV----------NLKDEDVVAAAFISNTSS 703

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
           +  +    R   +        +  R   G  V +    +  +  ++
Sbjct: 704 VYLL--TQRGSLKRMATEEIPVTSRAKRGLQVLRELKAKPHRVFAA 747


>gi|315080627|gb|EFT52603.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL078PA1]
          Length = 844

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 217/769 (28%), Positives = 374/769 (48%), Gaps = 38/769 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +    EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+   
Sbjct: 7   DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPD 66

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
               KSAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG++D    AA 
Sbjct: 67  RPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT
Sbjct: 126 RYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMAT 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+  A   ++D+P   +++++ ++ GPD PTGG I+   + I ++Y  GRG 
Sbjct: 186 NIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRII-GLDGIADAYCTGRGS 244

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
           F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D +   +
Sbjct: 245 FKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTN 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++      ++P+ L+E ++ L+ +E  F +N   L     P+ + L  +L+ +L HR
Sbjct: 305 GTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLV-EGQPRTLGLLEMLQVYLDHR 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            +V  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  ++  F L E
Sbjct: 364 LDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLMGTFDLDE 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL+++LR L K    +++SE D L    E +  ++N   +    ++ E+ EV   
Sbjct: 424 VQANYILDMQLRRLTKFSTIELESERDELRERIEGLTLIINDKAELRRVVSGELVEVSSK 483

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RRT     + +  A      +  +P  V++S  G +  + +     S    
Sbjct: 484 YGTP-----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLLARIDTADGLPSDGDR 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--------LLSGRGHGEAIQLLIDLN 597
              D +  +          ++++ G+   + A                 G  +  L+ L 
Sbjct: 539 ATHDVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLE 598

Query: 598 HNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
             +  +       +   L + +  G    V    +    ++    + + + +++   V++
Sbjct: 599 KGERALAVTSLSGAGPSLALGTRNGIVKRVNPELLG---KESWEVIGLKNGDEVVGAVEM 655

Query: 657 TGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             + + +  V +   LL F    +    R G GV     KD             G + + 
Sbjct: 656 GDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD--PVIFFGAAPRRGSSVVT 713

Query: 714 SA---------GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            A              +           R   G    +        + +
Sbjct: 714 VAASSPAAAGKEPGSIKLTPFDQYPPKGRATGGMRCQRFLKGETALVFA 762


>gi|50842527|ref|YP_055754.1| DNA topoisomerase IV subunit A [Propionibacterium acnes KPA171202]
 gi|289425287|ref|ZP_06427064.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK187]
 gi|289427072|ref|ZP_06428788.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J165]
 gi|295130606|ref|YP_003581269.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK137]
 gi|50840129|gb|AAT82796.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|289154265|gb|EFD02953.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK187]
 gi|289159541|gb|EFD07729.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J165]
 gi|291375907|gb|ADD99761.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK137]
 gi|313764441|gb|EFS35805.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL013PA1]
 gi|313772177|gb|EFS38143.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL074PA1]
 gi|313807532|gb|EFS46019.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA2]
 gi|313810042|gb|EFS47763.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL083PA1]
 gi|313812930|gb|EFS50644.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL025PA1]
 gi|313815980|gb|EFS53694.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL059PA1]
 gi|313818574|gb|EFS56288.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL046PA2]
 gi|313820341|gb|EFS58055.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA1]
 gi|313822853|gb|EFS60567.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA2]
 gi|313825216|gb|EFS62930.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL063PA1]
 gi|313827504|gb|EFS65218.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL063PA2]
 gi|313830369|gb|EFS68083.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL007PA1]
 gi|313833742|gb|EFS71456.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL056PA1]
 gi|313838746|gb|EFS76460.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL086PA1]
 gi|314915434|gb|EFS79265.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA4]
 gi|314918284|gb|EFS82115.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA1]
 gi|314920096|gb|EFS83927.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA3]
 gi|314925229|gb|EFS89060.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA3]
 gi|314931618|gb|EFS95449.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL067PA1]
 gi|314955671|gb|EFT00073.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL027PA1]
 gi|314958185|gb|EFT02288.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA1]
 gi|314959988|gb|EFT04090.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA2]
 gi|314967846|gb|EFT11945.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA1]
 gi|314973373|gb|EFT17469.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL053PA1]
 gi|314976052|gb|EFT20147.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL045PA1]
 gi|314978410|gb|EFT22504.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL072PA2]
 gi|314983927|gb|EFT28019.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA1]
 gi|315084299|gb|EFT56275.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL027PA2]
 gi|315085642|gb|EFT57618.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA3]
 gi|315088936|gb|EFT60912.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL072PA1]
 gi|315095918|gb|EFT67894.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL038PA1]
 gi|315098549|gb|EFT70525.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL059PA2]
 gi|315101094|gb|EFT73070.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL046PA1]
 gi|315105639|gb|EFT77615.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL030PA1]
 gi|315108313|gb|EFT80289.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL030PA2]
 gi|327326200|gb|EGE67990.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2]
 gi|327331925|gb|EGE73662.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3]
 gi|327443127|gb|EGE89781.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL013PA2]
 gi|327445910|gb|EGE92564.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL043PA2]
 gi|327448110|gb|EGE94764.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL043PA1]
 gi|327450769|gb|EGE97423.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA3]
 gi|327453887|gb|EGF00542.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL083PA2]
 gi|328753457|gb|EGF67073.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL020PA1]
 gi|328754187|gb|EGF67803.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA1]
 gi|328754561|gb|EGF68177.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL025PA2]
 gi|328760839|gb|EGF74405.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1]
 gi|332675446|gb|AEE72262.1| DNA gyrase subunit A [Propionibacterium acnes 266]
          Length = 844

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 217/769 (28%), Positives = 374/769 (48%), Gaps = 38/769 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +    EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+   
Sbjct: 7   DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPD 66

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
               KSAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG++D    AA 
Sbjct: 67  RPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT
Sbjct: 126 RYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMAT 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+  A   ++D+P   +++++ ++ GPD PTGG I+   + I ++Y  GRG 
Sbjct: 186 NIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRII-GLDGIADAYCTGRGS 244

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
           F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D +   +
Sbjct: 245 FKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTN 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++      ++P+ L+E ++ L+ +E  F +N   L     P+ + L  +L+ +L HR
Sbjct: 305 GTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLV-EGQPRTLGLLEMLQVYLDHR 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            +V  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  ++  F L E
Sbjct: 364 LDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLMGTFDLDE 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL+++LR L K    +++SE D L    E +  ++N   +    ++ E+ EV   
Sbjct: 424 VQANYILDMQLRRLTKFSTIELESERDELRERIEGLTLIVNDKAELRRVVSGELVEVSSK 483

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RRT     + +  A      +  +P  V++S  G +  + +     S    
Sbjct: 484 YGTP-----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLLARIDTADGLPSDGDR 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--------LLSGRGHGEAIQLLIDLN 597
              D +  +          ++++ G+   + A                 G  +  L+ L 
Sbjct: 539 ATHDVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLE 598

Query: 598 HNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
             +  +       +   L + +  G    V    +    ++    + + + +++   V++
Sbjct: 599 KGERALAVTSLSGAGPSLALGTRNGIVKRVNPELLG---KESWEVIGLKNGDEVVGAVEM 655

Query: 657 TGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             + + +  V +   LL F    +    R G GV     KD             G + + 
Sbjct: 656 GDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD--PVIFFGAAPRRGSSVVT 713

Query: 714 SA---------GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            A              +           R   G    +        + +
Sbjct: 714 VAASSPAAAGKEPGSIKLTPFDQYPPKGRATGGMRCQRFLKGETALVFA 762


>gi|325686242|gb|EGD28285.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 827

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 208/766 (27%), Positives = 383/766 (50%), Gaps = 32/766 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM   G     
Sbjct: 2   PETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA R
Sbjct: 62  PFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+ +++ ++L+ +D++ V     +++   EP V P++FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A + L+ +P+ S+E L+ ++ GPDFPTGG IV  ++ + ++Y+ G+G  
Sbjct: 182 IPPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGG-IVMGKKGLRDAYKTGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VRA+  +EE+      IVVTEIPY V K++L++KI E+ +++ +  + ++RDE+     
Sbjct: 241 QVRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D   ++  +   +D++  +  NM  ++    P  + L  IL  +L H  E
Sbjct: 301 SIVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHM-TPVQVGLKRILAAYLEHEEE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ +R+ F ++    R+EI++GL+ A   +D++I +IR        K  +V+ F+ T+ Q
Sbjct: 360 VVTKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +   +++E + L  +    + +L   K    +I  E+R VK+ F 
Sbjct: 420 AEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILADPKVLQKEIIKELRAVKKEFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+   +  +A     ++A+I +E + V+IS  G+I+     S   +      
Sbjct: 480 -----SDRRSEISD-EKARVEVDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNG 533

Query: 548 GDSLKIALHAHTTDR---ILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDI 602
                  ++  +      + L +  G     P         +  G+ +   + L  ++ I
Sbjct: 534 LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESI 593

Query: 603 VTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE-KMKLVV 654
           +  F      D     L+ ++ G    V  +++        +    +K+  E+ ++  V 
Sbjct: 594 IRVFALEALDDPNLAFLLATNDGFIKQVALADLQPTRTYKSRAIMAMKMKGEDSRVITVD 653

Query: 655 KVTGD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710
            V       + +       L + I ++P++  R  GV+  + K+            +   
Sbjct: 654 LVKTSEKREITLFTNQAFALKYDIGEVPQVGARAAGVKSINLKEDDYVVACLVTDPQYED 713

Query: 711 WI---DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
            +       R   +     L     R   G LV +    +  + ++
Sbjct: 714 LLKVGLVTQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKTKPHRIVA 759


>gi|313792128|gb|EFS40229.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA1]
 gi|313801920|gb|EFS43154.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA2]
 gi|314962787|gb|EFT06887.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL082PA1]
 gi|315078002|gb|EFT50053.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL053PA2]
 gi|327453154|gb|EGE99808.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL092PA1]
          Length = 844

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 218/769 (28%), Positives = 375/769 (48%), Gaps = 38/769 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +    EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+   
Sbjct: 7   DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPD 66

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
               KSAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG++D    AA 
Sbjct: 67  RPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT
Sbjct: 126 RYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMAT 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+  A   ++D+P   +++++ ++ GPD PTGG I+   + I ++Y  GRG 
Sbjct: 186 NIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRII-GLDGIADAYCTGRGS 244

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
           F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D +   +
Sbjct: 245 FKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTN 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++      ++P+ L+E ++ L+ +E  F +N   L     P+ + L  +L+ +L HR
Sbjct: 305 GTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLV-EGQPRTLGLLEMLQVYLDHR 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            +V  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  ++  F L E
Sbjct: 364 LDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLMGTFDLDE 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL+++LR L K    +++SE D L    E +  ++N   +    ++ E+ EV   
Sbjct: 424 VQANYILDMQLRRLTKFSTIELESERDELRERIEGLTLIVNDKAELRRVVSGELVEVSSK 483

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RRT     + +  AT     +  +P  V++S  G +  + +     S    
Sbjct: 484 YGTP-----RRTVLLGAAPSVAATSAPLEVPDDPCWVLLSATGLLARIDTADGLPSDGDR 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--------LLSGRGHGEAIQLLIDLN 597
              D +  +          ++++ G+   + A                 G  +  L+ L 
Sbjct: 539 ATHDVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLE 598

Query: 598 HNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
             +  +       +   L + +  G    V    +    ++    + + + +++   V++
Sbjct: 599 KGERALAVTSLSGAGPSLALGTRNGIVKRVNPELLG---KESWEVIGLKNGDEVVGAVEM 655

Query: 657 TGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             + + +  V +   LL F    +    R G GV     KD             G + + 
Sbjct: 656 GDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD--PVIFFGAAPRRGSSVVT 713

Query: 714 SA---------GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            A              +           R   G    +        + +
Sbjct: 714 VAASSPAAAGKEPGSIKLTPFDQYPPKGRATGGMRCQRFLKGETALVFA 762


>gi|317163603|gb|ADV07144.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 767

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 262/767 (34%), Positives = 402/767 (52%), Gaps = 43/767 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQPHASHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD+  Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDRPAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDR 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L
Sbjct: 421 VIRESDDPKADLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   I  E++   + F  +     RRT   E  RA            EPIT+++S
Sbjct: 481 GDENEKRKLIIKEMQADMKQFGDA-----RRTLVEEAGRAVL----TQTAADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  I  LI+L +    V           L+ SS G  FI +  +++   + GK  +   
Sbjct: 592 DGVPISSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTAD 651

Query: 646 SEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   V V           +       + L F I ++  M++GKG+++     G   
Sbjct: 652 SGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESM 711

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
                     +       R            +     KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIE---AKRGKKGRLLP 755


>gi|148544014|ref|YP_001271384.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri DSM 20016]
 gi|184153408|ref|YP_001841749.1| topoisomerase IV A subunit [Lactobacillus reuteri JCM 1112]
 gi|227364929|ref|ZP_03848973.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri MM2-3]
 gi|325682448|ref|ZP_08161965.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           MM4-1A]
 gi|148531048|gb|ABQ83047.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri DSM 20016]
 gi|183224752|dbj|BAG25269.1| topoisomerase IV A subunit [Lactobacillus reuteri JCM 1112]
 gi|227070033|gb|EEI08412.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri MM2-3]
 gi|324978287|gb|EGC15237.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           MM4-1A]
          Length = 821

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 213/750 (28%), Positives = 376/750 (50%), Gaps = 28/750 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 1   MRNGKIEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD  AA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A + LI +P  S++KL+E+I GPDFPTGGII    + I ++Y+ GRG   
Sbjct: 181 PTHNLSEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQG-IDGIRKAYQTGRGRVV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E +  G   I VTEIPY+V K++L+++I +L +AK++  + + RDE+      
Sbjct: 240 VRAKTEIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R  + + ++  +   +D++  +  NM  +   R P  + L  IL  +L  ++E+
Sbjct: 300 IAIELKRGANANGILNYLLKNTDLQINYNFNMVAIDDQR-PMRVGLKRILTSYLEFQKEI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ + +    +R+ I++GL+ A   +D++I  IR        K  +V  ++ T  Q 
Sbjct: 359 IRRRTQYNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLVKEYNFTPEQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +  +++ E + L +   +   +L +  +    +  EIR +K+ F  
Sbjct: 419 EAIVTLQLYRLTNTDVTELEKEQEQLNSRINEYQLILTNENELAKVLTKEIRAIKKEFGN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                  R T  E          +  +  E + V++S+ G+I+     S    +      
Sbjct: 479 P------RRTKIENHVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSFKASEAEENGL 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIV 603
           +E D   +    +T   + + +  G     P         +  GE I   I L  N++I+
Sbjct: 533 REDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKDTGEHISQTIGLADNEEII 592

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEI---IANTRKGKTFLKVSSEEKMKLV---V 654
            A ++   D    +++ +S G       ++              +K+    ++  V    
Sbjct: 593 KAMIFDKLDQPGTIIMGTSDGQVKQTAFNDYKPGSRYKSHASVAIKLRDNAQVVNVDYYE 652

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
               +  +  +      + + +  +P    R  GVR  + KD          + +G    
Sbjct: 653 PTNENCSLLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQV-ADQILVKDGQDIA 711

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
               R   +        +G R   G LV +
Sbjct: 712 VITQRGAFKEMPVDEIEVGARARRGELVLR 741


>gi|327330269|gb|EGE72018.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1]
          Length = 844

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 217/769 (28%), Positives = 374/769 (48%), Gaps = 38/769 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +    EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+   
Sbjct: 7   DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPD 66

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
               KSAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG++D    AA 
Sbjct: 67  RPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT
Sbjct: 126 RYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMAT 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+  A   ++D+P   +++++ ++ GPD PTGG I+   + I ++Y  GRG 
Sbjct: 186 NIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRII-GLDGIADAYCTGRGS 244

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
           F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D +   +
Sbjct: 245 FKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTN 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++      ++P+ L+E ++ L+ +E  F +N   L     P+ + L  +L+ +L HR
Sbjct: 305 GTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLV-EGQPRTLGLLEMLQVYLDHR 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            +V  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  ++  F L E
Sbjct: 364 LDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLMGTFDLDE 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL+++LR L K    +++SE D L    E +  ++N   +    ++ E+ EV   
Sbjct: 424 VQANYILDMQLRRLTKFSTIELESERDELRERIEGLTLIVNDKAELRRVVSGELVEVSSK 483

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RRT     + +  A      +  +P  V++S  G +  + +     S    
Sbjct: 484 YGTP-----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLLARIDTADGLPSDGDR 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--------LLSGRGHGEAIQLLIDLN 597
              D +  +          ++++ G+   + A                 G  +  L+ L 
Sbjct: 539 ATHDVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLK 598

Query: 598 HNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
             +  +       +   L + +  G    V    +    ++    + + + +++   V++
Sbjct: 599 KGERALAVTSLSGAGPSLALGTRNGIVKRVNPELLG---KESWEVIGLKNGDEVVGAVEM 655

Query: 657 TGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             + + +  V +   LL F    +    R G GV     KD             G + + 
Sbjct: 656 GDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD--PVIFFGAAPRRGSSVVT 713

Query: 714 SA---------GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            A              +           R   G    +        + +
Sbjct: 714 VAASSPAAAGKEPGSIKLTPFDQYPPKGRATGGMRCQRFLKGETALVFA 762


>gi|293192595|ref|ZP_06609549.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
 gi|292820102|gb|EFF79099.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
          Length = 823

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 223/786 (28%), Positives = 371/786 (47%), Gaps = 43/786 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +        +EN+  + +   +   +L YA+S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MAKKDQVVDIPEKDENITEIDVSDEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MGL       KS R+VGEV+GKLHPHGD ++Y++LVRLAQPF  R PL+ G GNFG+
Sbjct: 61  MDQMGLRPDKGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEARM   A  ++ G+DED VDF   Y+ +  +P V P+ FP LL NG 
Sbjct: 121 LD-DGPAAARYTEARMAPAALDLVTGLDEDTVDFVPNYDNQFMQPDVLPAAFPQLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E    A+ L+DNP  S+  L+ YI GPD P GG ++   E I 
Sbjct: 180 SGIAVGMATNVAPHNLSETIAGAIHLLDNPSASVADLMRYIPGPDLPEGG-VIVGLEGIK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y  GRG F+ RA+  +E V      I+VT++PY V   ++IEKI E   A R+  +  
Sbjct: 239 EAYETGRGAFKTRAKVQIERVTARKMGIIVTQLPYMVGPEKVIEKIKENANAGRLKGISS 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +++ +       ++       +P+ +++ ++  + +E  F +N   L  G  P+ + L  
Sbjct: 299 VQNLTDRIHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALV-GGQPRTLGLKE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ +L HR +V  RRS FR++  + R+ +++GLLIA L+ID++IAIIR+ D     +  
Sbjct: 358 MLQVFLDHRLDVTTRRSRFRLKKCEDRLHLVEGLLIAILDIDDVIAIIRSSDDAEIARER 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++ F L+E Q + IL LRLR L K    ++++E D LLA+   +  +L   +     + 
Sbjct: 418 LMTAFDLSEAQANYILELRLRRLTKFSRIELEAERDELLAKIASLREILEDPELLRALVK 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ--------------QAMIEKEPITV 522
            E+REV +            +T   V  A                    +  I  +P  V
Sbjct: 478 KELREVSDRLGTPRRTLLLASTGTPVGAAAADDAALAALPSVSRSGKGLELQIPDDPCVV 537

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+S+ G +  ++                           ++ +++ DG A+ +   +L +
Sbjct: 538 VLSSSGALARVEGGDPLEPGPRAASDGWRVQLPST-ARSQVAVVTEDGIAHRIDVVDLPA 596

Query: 583 GRGHGE------AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                       A+   + L+ +   V     + T  + + +++G    +    +    R
Sbjct: 597 LPRFETGLSLAGAMPASLLLHTDVPAVGLLDPEGTDVVAMGTARGTVKRLRPDVL---QR 653

Query: 637 KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
                + +   +++    + + +  +  +  + +LL     ++    R   G+       
Sbjct: 654 DEWEVITLEDGDRLVGFDRCSDEADLVFISSDAQLLRTPAAKVRPQGRTAGGMAGMKLNP 713

Query: 695 GGISDVICFKICE----------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           G  +                    L  +   G++  +           RGG G    +  
Sbjct: 714 GVEALGFWVVEAPIDAVVVTVAAALGALPGTGQTTVKVTPFECYPTKGRGGQGVRCQRFL 773

Query: 745 PRSGKF 750
               + 
Sbjct: 774 RGEDRL 779


>gi|315124516|ref|YP_004066520.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315018238|gb|ADT66331.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 808

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 224/739 (30%), Positives = 366/739 (49%), Gaps = 50/739 (6%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+
Sbjct: 1   MQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAA RYTEA+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+
Sbjct: 61  IDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGS 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP H++ E+ +  L L+DN + S+E+++++I GPDFPTGG I+  ++ I+
Sbjct: 121 SGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGG-IIYGKKGII 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  +VRA+  + E       I++ E+PYQ  K+RLIE+IAEL+  ++I  + +
Sbjct: 180 EAYRTGRGRVKVRAKTHI-EKKTNKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISE 238

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES ++   V+    R    ++++ ++F  + ME+ F + + +    + P++  L  +
Sbjct: 239 VRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLEL 297

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           L  +L HR+ V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S 
Sbjct: 298 LNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSL 357

Query: 420 --RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             +F L+E Q +AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  
Sbjct: 358 VAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRD 417

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E++E++  F                           +       +           K   
Sbjct: 418 ELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGG 477

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               A+   + D ++    A+T D ++ ++  G+ Y L    +        G+A+  LI+
Sbjct: 478 KGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTVKGKAVVNLIN 537

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L   + I+       +D +  L   +  G       SE       G   + +   +++  
Sbjct: 538 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVT 597

Query: 653 VVKV--TGDHV-----------------------------------AVVGENRKLLIFSI 675
            + V    D +                                     V +    + F +
Sbjct: 598 AIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPL 657

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKR 733
            ++ E+ R  +GV    +K+     V    I  +    +  + +   +  N     L  R
Sbjct: 658 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 717

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           GG G +  K   ++   +S
Sbjct: 718 GGKGVICMKLTEKTKDLIS 736


>gi|226312849|ref|YP_002772743.1| DNA topoisomerase IV subunit A [Brevibacillus brevis NBRC 100599]
 gi|226095797|dbj|BAH44239.1| DNA topoisomerase IV subunit A [Brevibacillus brevis NBRC 100599]
          Length = 847

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 217/766 (28%), Positives = 381/766 (49%), Gaps = 34/766 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           ++   +   S    + +R+  YA   I  RAIPD RDG KPV RRI++AM + G      
Sbjct: 1   MLSNQIINQSFAEIMGKRFGDYANLVILSRAIPDARDGLKPVQRRILYAMYQEGNTNDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG V+G  HPHGD ++Y+++VR+AQ +  R  LI G GNFG++D D  AA RY
Sbjct: 61  YRKSAKTVGYVMGTYHPHGDSAIYETMVRMAQWWKMRQVLIQGHGNFGSLDADPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R++ +A  +L+ +++D V F   Y+    +P V PS+FPNLL NG +GIAVG AT I
Sbjct: 121 TESRLSALANELLRDIEKDTVTFIPNYDNSAQQPAVLPSRFPNLLVNGAAGIAVGFATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +AA+A + NP IS+++L++++ GPDFPTGG IV+    I +++  GRG F 
Sbjct: 181 PTHNLGEVIDAAVAQMKNPNISLDELMQHVKGPDFPTGG-IVQGLSGIRKAFETGRGQFI 239

Query: 252 VRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES----- 305
           +R +  VEE   G    IVV+EIPY+V KS+L+ +I EL++ ++I     +RDE+     
Sbjct: 240 IRGKTHVEEPKGGKIKKIVVSEIPYEVVKSKLVGQIDELVMERKIEGALAVRDETGRKEA 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    ++    +  D   ++  ++  +D++  +      +      + M L  +L  ++
Sbjct: 300 EQKKVRIVVDIRKEADEQAILNYLYKNTDLQIYYNY-NMNVIHEGTIRQMGLKALLGAYI 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H++EV+  R  + +     R  I++GL+ A   + +I+  I + +     K  ++ ++ 
Sbjct: 359 DHQKEVVTNRCQYDLDRKQSREHIVEGLIRAKSILRQIVDTIMDSEDRADAKKNIMEKYG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T+NQ DAIL+++L SL +L+  +++ EL  L  E E++ S+L S K+    I  E+ E+
Sbjct: 419 FTDNQADAILSIQLASLTRLDIVKLEKELATLAKEIEELKSILASEKKLIQVITGELNEI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ +++       R T  +    +        I  E   V ++N G+I+     S     
Sbjct: 479 KKKYAEE------RLTEIQGEIEEIKIDIAMQINAEDCIVTLTNEGYIKRTSPRSFKSVG 532

Query: 543 L-----HFKEGDSLKIALHAHTTDRILLLSTDGKAYT--LPAGNLLSGRGHGEAIQLLID 595
                   KEGD ++  +  +T+   L  + DGK +   + A      +  G A+  +I 
Sbjct: 533 GTLETCGVKEGDRVRYFMETNTSHTALFFTQDGKYFATLVNAFPDDKWKDIGSALVNIIP 592

Query: 596 LNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  NQ IV   + ++      +  VS  G       SE   N        K+   +   +
Sbjct: 593 LEKNQRIVGFTIVENFKQPLYVYHVSKNGLMKKTALSEYETNRSSALVAAKLKGGDDEFM 652

Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG-GISDVICFKICEG 708
            V V  +   +    ++   + F   ++    R   GV+  +   G  +  ++  +  + 
Sbjct: 653 NVFVADEAGAILGATKDGMGIRFQRSEVSATGRASSGVKAIALAPGDDVITMLPIEEVDS 712

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK--FLS 752
             +         +        L  R G G  + +   ++     ++
Sbjct: 713 RAFSLLTAEGVVKRTAIGAIPLQARAGKGVQLIRK-RKNNPHELVA 757


>gi|319779377|ref|YP_004130290.1| Topoisomerase IV subunit A [Taylorella equigenitalis MCE9]
 gi|317109401|gb|ADU92147.1| Topoisomerase IV subunit A [Taylorella equigenitalis MCE9]
          Length = 768

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 262/762 (34%), Positives = 417/762 (54%), Gaps = 44/762 (5%)

Query: 6   ISNSN---TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + ++         + ++V L     + YL YA S +K RA+PD+ DG KPV RRI++AM 
Sbjct: 1   MEDTELELDFESNSQESVDLGTYASKAYLDYAFSVVKGRALPDVGDGQKPVQRRILYAMD 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            MGL  G    KSAR+VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI GQGNFG+ D
Sbjct: 61  RMGLRAGVKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRD 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEAR++ +AEL+L  + E  V+F   Y+ ++ EP + P++ P LL NG SG
Sbjct: 121 GDGAAAMRYTEARLSPIAELLLDELGEKTVEFIPNYDGQELEPAMLPARLPFLLLNGASG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT IPSHN+ E+  A +A+I NP IS ++L + + GPD+ +G  I+   E + + 
Sbjct: 181 IAVGMATEIPSHNLGEVANACIAIIKNPNISSDELFDILPGPDYHSGAQIISQPEVLKQI 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G+G  +VRARW  EE+ RG W +VVTE+P      +++E+I EL   K  P  + + 
Sbjct: 241 YETGKGTVKVRARWEFEELARGQWQMVVTELPPNTSCQKVLEEIEELTNPKVKPGKKSLN 300

Query: 303 DE--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
            E                      + VR+V  PK   +D +  + ++   + ME    +N
Sbjct: 301 SEQQNTKSMMLGLLDAVRDESGREDSVRLVFEPKTSRIDREEFVNALLTHTSMEGNSSIN 360

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           +  + +   P+   L  IL EW+  R E +  R+ +R++ +  R+ +L+G  I  LN+DE
Sbjct: 361 LVCIGIDGKPRQRNLKEILIEWVQFRTETVLSRTKYRLERVLDRIHVLEGREIVLLNVDE 420

Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           +I+ IRN D+PKP ++ +F+L++ Q + IL ++LR L KLE  +I+ EL++   E++K++
Sbjct: 421 VISTIRNSDEPKPALIEKFNLSDRQAEDILEMKLRQLAKLEGIKIQQELEDKRLEQKKLE 480

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           +LLNS      QI  EI    + ++ +     RRT      +  +    +  +  EP+TV
Sbjct: 481 NLLNSNSSLKKQIIKEIESDAKKYADA-----RRTLI----KHAEKATLEVKVVDEPVTV 531

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +IS++GW+R+ + H V+ SAL+FK GDSL       T D ++ + ++G+ YT+P  +L S
Sbjct: 532 IISDKGWVRARQGHGVEESALNFKSGDSLYGTFEVRTVDNLIGIGSNGRVYTVPVSSLPS 591

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            RG G+    +IDL     I            L++   G  F+    ++++  + GK+F+
Sbjct: 592 ARGDGQPYSAMIDLESKTQISHYVCAKEDSVWLLMQDNGLGFVTTFKDMVSRIKAGKSFI 651

Query: 643 KVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISD 699
            +     +   + V     ++ ++ +N + LI  I  I  + S G+G  L          
Sbjct: 652 SMEEGANLLRPIPVGSSARYIGMLSKNDRFLIVPIQDIKHLNSGGRGTILMGLDPKDKIS 711

Query: 700 VICFKICEGLTWIDSAGRSYNRSEN------DLLGWLGKRGG 735
            +      G+    + G   N+         DL  ++GKR  
Sbjct: 712 QVVTVTESGIQ---ATGIYRNKQVEELIALGDLHEYIGKRAR 750


>gi|154508948|ref|ZP_02044590.1| hypothetical protein ACTODO_01464 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798582|gb|EDN81002.1| hypothetical protein ACTODO_01464 [Actinomyces odontolyticus ATCC
           17982]
          Length = 823

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 223/786 (28%), Positives = 370/786 (47%), Gaps = 43/786 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +        +EN+  + +   +   +L YA+S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MAKKDQVVDIPEKDENITEIDVSDEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MGL       KS R+VGEV+GKLHPHGD ++Y++LVRLAQPF  R PL+ G GNFG+
Sbjct: 61  MDQMGLRPDKGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEARM   A  ++ G+DED VDF   Y+ +  +P V P+ FP LL NG 
Sbjct: 121 LD-DGPAAARYTEARMAPAALDLVTGLDEDTVDFVPNYDNQFMQPDVLPAAFPQLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E    A+ L+DNP  S+  L+ YI GPD P GG ++   E I 
Sbjct: 180 SGIAVGMATNVAPHNLSETIAGAIHLLDNPSASVADLMRYIPGPDLPEGG-VIVGLEGIK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y  GRG F+ RA+  +E V      I+VT++PY V   ++IEKI E   A R+  +  
Sbjct: 239 EAYETGRGAFKTRAKVQIERVTARKMGIIVTQLPYMVGPEKVIEKIKENANAGRLKGISS 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +++ +       ++       +P+ +++ ++  + +E  F +N   L  G  P+ + L  
Sbjct: 299 VQNLTDRIHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALV-GGQPRTLGLKE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ +L HR +V  RRS FR++  + R+ +++GLLIA L+ID++IAIIR+ D     +  
Sbjct: 358 MLQVFLDHRLDVTTRRSRFRLKKCEDRLHLVEGLLIAILDIDDVIAIIRSSDDAEIARER 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++ F L+E Q + IL LRLR L K    ++++E D LLA+   +  +L   +     + 
Sbjct: 418 LMTAFDLSEAQANYILELRLRRLTKFSRIELEAERDELLAKIASLREILEDPELLRALVK 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ--------------QAMIEKEPITV 522
            E+REV +            +T   V  A                       I  +P  V
Sbjct: 478 KELREVSDRLGTPRRTLLLASTGTPVGAAAADDAALAALPSVSRSGKGLDLQIPDDPCVV 537

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+S+ G +  ++                           ++ +++ DG A+ +   +L +
Sbjct: 538 VLSSTGALARVEGGDPLEPGPRAASDGWRVQLPST-ARSQVAVVTEDGIAHRIDVVDLPA 596

Query: 583 GRGHGE------AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                       A+   + L+ +   V     + T  + + +++G    +    +    R
Sbjct: 597 LPRFETGLSLAGAMPASLLLHTDVPAVGLLDPEGTDVVAMGTTRGTVKRLRPDVL---QR 653

Query: 637 KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
                + +   +++    + + +  +  +  + +LL     ++    R   G+       
Sbjct: 654 DEWEVIALEDGDRLVGFDRCSDEADLVFISSDAQLLRTPAAKVRPQGRTAGGMAGMKLNA 713

Query: 695 GGISDVICFKICE----------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           G  +                    L  +   G++  +           RGG G    +  
Sbjct: 714 GAEALGFWVVEAPIDAVVVTVAAALGALPGTGQTTVKVTPFECYPTKGRGGQGVRCQRFL 773

Query: 745 PRSGKF 750
               + 
Sbjct: 774 RGEDRL 779


>gi|296129539|ref|YP_003636789.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
 gi|296021354|gb|ADG74590.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
          Length = 826

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 230/784 (29%), Positives = 358/784 (45%), Gaps = 48/784 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               + E +  V +   +E  +L YA S I  RA+PD RDG KPV RRII+ M++MGL  
Sbjct: 11  PPEDLVERIVDVDVTTEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRIIYQMADMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++YD++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 71  DRPYVKSARVVGEVMGKLHPHGDSAIYDAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAA 129

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM   A  + QG+DED VDF   Y+ +  +P V P+  PNLL NG +GIAVGMA
Sbjct: 130 SRYTEARMAPAAVAMTQGLDEDVVDFVPNYDNKLQQPGVLPAAIPNLLVNGATGIAVGMA 189

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++  HN+ E+  AA  L+ +P+ ++E L+ ++ GPD PTGG IV   + + ++YR GRG
Sbjct: 190 TNMAPHNLVEVVAAARHLVAHPDATLEDLMRFVPGPDLPTGGKIV-GLDGVRDAYRTGRG 248

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
            FR RA   VE V      IVVTE+PY V   ++IEKI E + +K++  + D+ D +  +
Sbjct: 249 AFRTRATARVENVTPRRKGIVVTELPYTVGPEKVIEKIKEGVQSKKLSGISDVVDLTDRQ 308

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++        P+ ++E ++  + +E  F +N   L     P+ + L  +L+ W+ H
Sbjct: 309 HGLRLVIEVKTGFHPEAVLEQLYRHTPLEDSFSVNNVALVD-GQPRTLGLVDLLRVWVDH 367

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLT 424
           R EV+ RR+S+R+     R+ +++GLLIA L+IDE+I +IR  D        + S F L+
Sbjct: 368 RLEVVRRRTSYRLTKRQERLHLVEGLLIAILDIDEVIQVIRTSDDADTARGRLRSVFDLS 427

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q + IL LRLR L +    +++ E D L  E  ++ ++L          + E+ EV  
Sbjct: 428 EPQAEYILELRLRRLTRFSRIELERERDELTDEIARLQAILADDGLLRTVTSDEMAEVAA 487

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMI------------EKEPITVVISNRGWIRS 532
            +        RRT   E +                           P   ++S  G +  
Sbjct: 488 TYGTP-----RRTVLLEHAGGAGLAGAAGAPTSSKGAAAPLEIPDTPCWALLSATGLLAR 542

Query: 533 L--KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA--------GNLLS 582
                  V          D +  A+       I  L++ G+   L           +   
Sbjct: 543 TGEDVEPVRGDGTVRSRHDVVASAVSTTARADIGALTSAGRVVRLSVLELPSLPPTDGPP 602

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
               G  +   + L   + +V      D    L + +++G    V   ++ AN R     
Sbjct: 603 SLSGGLPVGEAVTLEKGESVVALVPLGDDAPPLALGTAQGVVKRVAAGDVPAN-RDAWEA 661

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
           + +   +++         D + +V  +  LL F   Q+    R   G+       G    
Sbjct: 662 ISLKDGDQVVGAALARDEDELVLVSSDSSLLHFPGAQVRPQGRSAGGMAGIKLAAGARVV 721

Query: 700 VICFKICEGLTW----------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                                 +        +           R   G    +       
Sbjct: 722 AFGVVRAGEDAVVVTVSGSSSALPGTQTGAAKVTPFSAYPGKGRATGGVRSHRFLKGEDA 781

Query: 750 FLSS 753
            + +
Sbjct: 782 LILA 785


>gi|239944807|ref|ZP_04696744.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
 gi|239991272|ref|ZP_04711936.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           11379]
 gi|291448273|ref|ZP_06587663.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
 gi|291351220|gb|EFE78124.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
          Length = 818

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 225/774 (29%), Positives = 373/774 (48%), Gaps = 36/774 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI+  M+EMGL
Sbjct: 8   TPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDS 125
                + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++   D 
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DED VDF+  Y+ ++ EP V P+ +PNLL NG SGIAV
Sbjct: 128 PAAMRYTECRMADATSLMTEAIDEDTVDFQSNYDGQEREPAVLPAAYPNLLVNGVSGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     I ++Y  
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIV-GLTGIKDAYTA 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +
Sbjct: 247 GRGSFKIRATVSVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +
Sbjct: 307 DRAHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           L HR EV+ RRS FR      R+ +++GL++A L+IDE+I IIR+ D     K  +++ F
Sbjct: 366 LDHRFEVVRRRSEFRRTKRRDRLHLVEGLIVALLDIDEVIRIIRDSDNSAQAKERLMAHF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q   IL+  LR L + +  +++SE D L  E + + ++L S  +    ++ E+  
Sbjct: 426 SLSEIQTQYILDTPLRRLTRFDRIELESERDKLNGEIDALTAILESDAELRKLVSSELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V + F        RRT   E + +  A++   + +     ++ S     R+  +  V++S
Sbjct: 486 VAKKFGT-----DRRTVLLESAGSQIASVPLEVADDPCRVLLSSTGLLARTANAEPVEIS 540

Query: 542 ALHFKEGDSLK-IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--------EAIQL 592
               +    +   A+ A     +  +++ G+   L   +L                 I  
Sbjct: 541 EDARRTKHDVIVSAVAATARGDVGAVTSTGRLLRLSVIDLPQLPDTHAEPNLSGGAQISE 600

Query: 593 LIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            + L  +++++           L + + +G    V   +  AN +     + +   +++ 
Sbjct: 601 FLTLEADEELICLTTLAEDSPGLAIGTLQGVVKRV-VPDYPAN-KDELEVITLKDGDRIV 658

Query: 652 LV--VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICE 707
               ++   + +  +  + +LL +    +    R   G+       G  +          
Sbjct: 659 GATELRTGEEDLVFITSDAQLLRYPAGSVRPQGRPAGGMAGVKLAAGAEVLSFTAVDPAA 718

Query: 708 GLTWIDSAGRSYN--------RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  AG            +           R   G    +        + +
Sbjct: 719 DAVVFTVAGSHGTLDDSVLTSKLTPFDQYPRKGRATGGVRCQRFLKGEDVLVFA 772


>gi|194467942|ref|ZP_03073928.1| DNA topoisomerase IV, A subunit [Lactobacillus reuteri 100-23]
 gi|194452795|gb|EDX41693.1| DNA topoisomerase IV, A subunit [Lactobacillus reuteri 100-23]
          Length = 821

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 213/750 (28%), Positives = 377/750 (50%), Gaps = 28/750 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 1   MRNGKIEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD  AA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A + LI +P  S++KL+E+I GPDFPTGGII    + I ++Y+ GRG   
Sbjct: 181 PTHNLSEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQG-IDGIRKAYQTGRGRVV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E +  G   I VTEIPY+V K++L+++I +L +AK++  + + RDE+      
Sbjct: 240 VRAKTEIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R  + + ++  +   +D++  +  NM  +   R P  + L  IL  +L  ++E+
Sbjct: 300 IAIELKRGANANGILNYLLKNTDLQINYNFNMVAIDDQR-PMRVGLKRILTSYLEFQKEI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ + +    +R+ I++GL+ A   +D++I  IR        K  +V  ++ T  Q 
Sbjct: 359 IRRRTQYNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLVKEYNFTPEQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +  +++ E + L +   +   +L +  +    +  EIR +K+ F  
Sbjct: 419 EAIVTLQLYRLTNTDVTELEKEQEQLNSRINEYQLILTNENELAKVLTKEIRAIKKEFGN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                  R T  E          +  +  E + V++S+ G+I+     S    +      
Sbjct: 479 P------RRTKIENHVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSFKASEAEENGL 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIV 603
           +E D   +    +T   + + +  G     P         +  GE I   I L  N++I+
Sbjct: 533 REDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKDTGEHISQTIGLADNEEII 592

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEI---IANTRKGKTFLKVSSEEKMKLV---V 654
            A ++   D    +++ +S G       ++              +K+    ++  V    
Sbjct: 593 KAMIFDKLDQPGTIIMGTSDGQVKQTAFNDYKPGSRYKSHASVAIKLRDNAQVVNVDYYE 652

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
               +  +  +      + + +  +P    R  GVR  + KD          + +G    
Sbjct: 653 PTNENCSLLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQV-ADQILVKDGQNIA 711

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
               R   ++       +G R   G LV +
Sbjct: 712 VITQRGAFKAMPVDEIEVGARARRGELVLR 741


>gi|1352715|sp|P48374|PARC_NEIGO RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|529410|gb|AAA82151.1| ParC [Neisseria gonorrhoeae]
          Length = 768

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 260/772 (33%), Positives = 397/772 (51%), Gaps = 52/772 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++        +   + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNTQPHASHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------- 297
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K            
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDR 300

Query: 298 ----------LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     ++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L
Sbjct: 421 VIRESDDPKADLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   I  E++   + F  +     RRT   E  RA            EPIT+++S
Sbjct: 481 GDENEKRKLIIKEMQADMKQFGDA-----RRTLVEEAGRAVL----TQTAADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKI-----ALHAHTTDRILLLSTDGKAYTLPAGNL 580
            +GWIRS   H++DLS   FKEGD LK              R +     G+ Y++ A  +
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGPHCFTRRHPRFI----RGRTYSIDAAEI 587

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG G  +  LI+L +    V           L+ SS G  FI +  +++   + GK 
Sbjct: 588 PGGRGDGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKV 647

Query: 641 FLKVSSEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK 693
            +   S E +   V V           +       + L F I ++  M++GKG+++    
Sbjct: 648 VMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLN 707

Query: 694 DGGISDVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVP 741
            G             +       R            +     KRG  G L+P
Sbjct: 708 AGESMTHTAVSSEPEILIESEGRRGAAHKDRLPVALIE---AKRGKKGRLLP 756


>gi|318042970|ref|ZP_07974926.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CB0101]
          Length = 834

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 217/779 (27%), Positives = 372/779 (47%), Gaps = 46/779 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   +  ++ + L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL  
Sbjct: 11  PDPSDDRRIQPIELHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R PL+ G GNFG++D D  AA
Sbjct: 71  DRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRNPLLDGHGNFGSVDDDPPAA 130

Query: 129 YRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            RYTE R+  +A E +L  + +D VDF   ++    EP V P++ P L+ NG +GIAVGM
Sbjct: 131 MRYTETRLAPIANEAMLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLILNGCTGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ +A +AL+  P++S EKLLE + GPDFPTGG ++     + ++Y  GR
Sbjct: 191 ATNIPPHNLGEVVDALIALVRKPDLSDEKLLELVPGPDFPTGGEVLTG-SGVRDTYLTGR 249

Query: 248 GGFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           G   +R    +EE+  G        +V+TE+PYQ+ K+  IEK+AE +   +I  + DIR
Sbjct: 250 GSIPMRGVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKINGIADIR 309

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   V+    R  +P+ ++  +   + +++ +   +  L     P  + L  +L+
Sbjct: 310 DESDREGMRVVVELRRDANPETVLGELQRRTALQSNYGAILLALVH-GKPIQLTLRQLLQ 368

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VS 419
           E+L +R   L RR+   ++  + R+E+++GL+ A   + ++I +I               
Sbjct: 369 EFLDYRELTLIRRTRHALKRAEDRLEVVEGLITALNALPKVIEMITAAPDAASARASLQV 428

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              L E Q DA+L + LR L  LE+  ++ E ++L  E+ ++  LL+      + +  E 
Sbjct: 429 HLDLNERQADAVLAMPLRRLTGLEQESLRKEAEDLRQERARLRHLLDERPALLDAMVAEF 488

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-------------KEPITVVISN 526
           + +K+ F+       RRT   E      A    A                     +VI  
Sbjct: 489 KALKKRFATP-----RRTRLVEGGDELVAQRTAAQRPNTEVLRQRAFEGLPSDGRLVIQA 543

Query: 527 RGWIRSLKSHSVDLSALHFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
            G ++ +    +    L             ++ L       +L  +  G+   L      
Sbjct: 544 DGQVKVVGPQLLGRLHLDEPAPLGDNPSPARLILPISEKPALLAFTDAGRVALLRW--EF 601

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-----LLVVSSKGNAFIVEESEIIANTR 636
           +G+  G   + L +  + + +V      S  +     + ++SS G    +   +    + 
Sbjct: 602 AGQQPGTLEKFLPEGMNGEQVVQLLPLPSGEQAAGASVGLLSSDGRFKRLPIEDFQELSG 661

Query: 637 KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSY 692
           +  + LK+     ++ VV    D  + V     ++L  +++   +P M R  +G  L   
Sbjct: 662 RATSVLKLKDGVTLQRVVLCRDDEELVVASSTGRMLRLAVNDANLPVMGRNAQGPVLLRL 721

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             G           +G   + ++     +          +RG +G +  +   R  + +
Sbjct: 722 LPGESVVGAAGVSPDGC-VLLASRSGQLKRLAANSLRRCQRGDIGQIGVRFSQRGDQLI 779



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 43/126 (34%), Gaps = 4/126 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI-QLLIDLNHNQDIVTAFVYDSTCKLL 615
               + +++ S+ G+   L   +         A   +L+ L   + +V A        +L
Sbjct: 681 CRDDEELVVASSTGRMLRLAVNDANLPVMGRNAQGPVLLRLLPGESVVGAAGVSPDGCVL 740

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGDHVAVVGENRKLLI 672
           + S  G    +  + +    R     + V      +++  + +     VA V  + + L 
Sbjct: 741 LASRSGQLKRLAANSLRRCQRGDIGQIGVRFSQRGDQLIDLREDRSAVVAAVLNDGRSLR 800

Query: 673 FSIDQI 678
               ++
Sbjct: 801 LDTAEL 806


>gi|323466443|gb|ADX70130.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           H10]
          Length = 818

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 214/763 (28%), Positives = 383/763 (50%), Gaps = 31/763 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++LQ +D+  V     +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+  L++++ GPDFPTG  IV   + I E+Y  GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGA-IVMGTQGIKEAYETGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHM-TPVQVGLKRILSSYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR        K  +++++  T NQ +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTANQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E   L    EK   LL   K    +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLADRKTLEKEIIKELSAVKKEFASP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                RRT   E   A     ++A++  E + V+IS  G+++     S    D +     
Sbjct: 481 -----RRTEISE-ESAKVKIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P         +  G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEK----MKLVV 654
            FV+DS       ++ ++ G    +E + +        +  T +K+ +++     + L+ 
Sbjct: 595 VFVFDSLDINKNFILATNDGYIKQLELTNLQPTRTYKSRAMTAIKLKNKDSMLIGVNLIN 654

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + ++I +IP    +  GV+  + KD            + L  + 
Sbjct: 655 PTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDDDYIVGYVLVDSKYLDLMH 714

Query: 714 S---AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
                 R   +     L     R   G LV +    +  + ++
Sbjct: 715 VGLITQRGAFKQFKLSLVNKVSRAKRGVLVLRELKTKPHRIVA 757


>gi|260771892|ref|ZP_05880810.1| topoisomerase IV subunit A [Vibrio metschnikovii CIP 69.14]
 gi|260613184|gb|EEX38385.1| topoisomerase IV subunit A [Vibrio metschnikovii CIP 69.14]
          Length = 704

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 256/699 (36%), Positives = 408/699 (58%), Gaps = 23/699 (3%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G 
Sbjct: 1   MSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            D   S AA RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG
Sbjct: 61  PDDPKSFAAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMAT IP HNV+E+ EA + LI++P  S+  L++Y+ GPDFPT   I+     +
Sbjct: 121 VTGIAVGMATDIPPHNVREVVEATIHLIEHPSASLIDLMQYVKGPDFPTEAEIISPPSDL 180

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            + Y+ GRG  ++RA W  E        IV++ +P+QV  ++L+E+IA  + AK++P++E
Sbjct: 181 EKIYQTGRGSIKMRAVWHKEGSD-----IVISALPHQVSGAKLLEQIAGQMRAKKLPMVE 235

Query: 300 DIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           D+RDES  +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   P+V  L
Sbjct: 236 DLRDESDHENPTRIVIVPRSSRVDCDTLMNHLFASTDLEKSFRVNLNMIGLNNRPEVKGL 295

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL EW+  RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED+PK ++
Sbjct: 296 TQILSEWIEFRRETVRARLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRQEDEPKGIL 355

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF +++ Q DAIL+ +LR L KLEE +I+ E D L  E+ K++ LL S ++    +  
Sbjct: 356 MERFGISDIQADAILDTKLRHLAKLEEVKIRGEQDALDKERAKLEELLGSERRLNTLLKK 415

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E++   E +        RR+   E + A   T +  M   E ITVVIS +GW+R  K H 
Sbjct: 416 ELKADAEKYGD-----DRRSPIVERAEAKALTERDLM-PNEMITVVISEKGWVRHAKGHE 469

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           VD  +L++K GD+        +  ++  L +DG++Y+L A  L S RG GE I   +++ 
Sbjct: 470 VDCHSLNYKSGDNYLAHACGKSNQQVAFLGSDGRSYSLEAHTLPSARGQGEPITGRLNIT 529

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
               I    + +     LV S  G  F+ + S++++  R GK  + + +  ++     V 
Sbjct: 530 EGSSIRQVIMGEDDQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVNLPNNSELLAPQAVN 589

Query: 658 G---DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGL 709
               D +  V    ++L+F I  +P++S+GKG ++ +      K           I  G 
Sbjct: 590 DLQHDEILAVTNQGRMLLFPIKDLPQLSKGKGNKIINIPSAKAKAREEVVSHLLAIPSGS 649

Query: 710 TW-IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           +  + +  R       DL  + G+RG  G+L+P+G  R 
Sbjct: 650 SITLYAGKRKLGLKPTDLDNFRGERGRRGALLPRGLQRV 688


>gi|121533296|ref|ZP_01665124.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1]
 gi|121307855|gb|EAX48769.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1]
          Length = 625

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 227/602 (37%), Positives = 349/602 (57%), Gaps = 7/602 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKS
Sbjct: 7   KVLPVRIEEEMKNSYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD SVYD++VR+AQ F  RYPLI G GNFG++DGD+AAA RYTE R
Sbjct: 67  ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSTRYPLIDGHGNFGSVDGDAAAAMRYTEVR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++AE +L  +D+D VDF   Y+E   EP V P+K PNLL NG++GIAVGMAT+IP HN
Sbjct: 127 MSRIAEEMLADIDKDTVDFVPNYDESLKEPTVLPAKIPNLLVNGSAGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +IDNPE+S+++L+  I GPDFPTGG ++  R+ I ++Y  GRG  ++RA+
Sbjct: 187 LGEVVDALVMMIDNPEVSVKELMMAIKGPDFPTGG-LILGRDGIKQAYTTGRGVIKMRAQ 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE++  G   IVVTEIPYQV K++L+E IA L+  K I  + D+RDES      V+  
Sbjct: 246 ARVEKMSSGKHRIVVTEIPYQVNKAKLVETIANLVRDKTIDGITDLRDESDRTGMRVVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R ++ D+++  ++  + ++  F + M  L     P+++ L  +L  +L H+++V+ RR
Sbjct: 306 LRRDVNADVILNQLYKHTQLQETFGVIMLALVD-GRPRILNLRDMLHYYLEHQKDVIIRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           + F ++    R  IL+GL IA  ++DE+I  IR    P   +  ++++F+L+E Q  AIL
Sbjct: 365 TKFELEKARARAHILEGLKIALDHLDEVITTIRQSRTPEIARDALIAKFALSEKQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E  ++L   E ++++L   ++    I  E+ +VK+ F  +   
Sbjct: 425 DMRLQRLTGLEREKIEEEYKDVLETIEWLEAVLADERKVMGIIKDELLDVKKRFGDARRT 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                          A     +       V        RS +     ++ +  KE D ++
Sbjct: 485 VITSDVSKLEVEDLIANEDIVITITHQGYVKRLPVDTYRSQRRGGRGVTGMGTKEEDFVE 544

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDS 610
               A T   IL  +  G+ Y L    L       +  AI  L+ +  ++ I        
Sbjct: 545 HLFVATTHHNILFFTNKGRVYRLKGYELPDAGRTAKGSAIINLLPMEKDEKITAVIPIKD 604

Query: 611 TC 612
           + 
Sbjct: 605 SA 606



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK-LVVKVTGDHVAVVGENRKL 670
           ++ ++ +G    +      +  R  +G T +    E+ ++ L V  T  ++       ++
Sbjct: 505 VITITHQGYVKRLPVDTYRSQRRGGRGVTGMGTKEEDFVEHLFVATTHHNILFFTNKGRV 564

Query: 671 LIFSIDQIPEMSR-GKGVRLQSY----KDGGISDVICFKIC 706
                 ++P+  R  KG  + +     KD  I+ VI  K  
Sbjct: 565 YRLKGYELPDAGRTAKGSAIINLLPMEKDEKITAVIPIKDS 605



 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 22/92 (23%), Gaps = 2/92 (2%)

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
               D V  +     +    +D      R G+GV     K+    +   F        + 
Sbjct: 499 IANEDIVITITHQGYVKRLPVDTYRSQRRGGRGVTGMGTKEEDFVE-HLFVATTHHNILF 557

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +               R   GS +    P
Sbjct: 558 FTNKGRVYRLKGYELPDAGRTAKGSAIINLLP 589


>gi|313885206|ref|ZP_07818958.1| DNA topoisomerase IV, A subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619897|gb|EFR31334.1| DNA topoisomerase IV, A subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 829

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 209/773 (27%), Positives = 384/773 (49%), Gaps = 41/773 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             +N++ ++    L +R+  Y+   I++RA+PD+RDG KPV RRI++AM E        +
Sbjct: 4   NNQNIEELTFSDILGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYEDRNTADNPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG VIG  HPHGD SVY+++VR++Q +  R PLI   GN G++DGD AAA RYT
Sbjct: 64  RKSAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKNRQPLIDMHGNNGSMDGDPAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A  +L+ +  D VD+   +++   EP+V P++FPNLL NG +GI+ G AT IP
Sbjct: 124 EARLSKIAMELLRDIHMDTVDYALNFDDSLEEPMVLPARFPNLLVNGATGISAGYATEIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +AA+ ++ +   ++  ++++I GPDFPTG I+    + +   Y+ G G   +
Sbjct: 184 PHNLGEVIDAAVYMLSHDTYTLADIMKFIKGPDFPTGTILQ-GAKGLKAIYKSGHGKIVL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+   +E +  G   IV+TE+PY+V KS+LI++I ++ I +++  + D+RDES  +   +
Sbjct: 243 RSTSTIESLKGGKSQIVITELPYEVNKSKLIQRIDDIRIQRKVEGMADVRDESDRNGTRL 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  D + ++  +F  +D++  +  NM  ++  R P  + L  +L+ ++AH++EV+
Sbjct: 303 VIEIKREADAEQILNYLFKNTDLQINYHFNMIAIN-QRRPHEVGLIDMLEAYIAHQKEVI 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ + +     R+ I+ GL+     +D++IA IR  +     K  +   F  + +Q +
Sbjct: 362 LRRTQYSLNKDQARLHIVDGLIYMVSILDQVIATIRQSESKSHAKENLAKEFDFSLDQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   +++E   L        ++L+  K     +  E++ VK+ F   
Sbjct: 422 AIVSLQLYRLTNTDIVALQNERLELNERIGMYHNILSKDKSLKATLINELKAVKKAFPSP 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T  EV   +    Q  ++ +E + V ++  G+I+     S    D   L  +
Sbjct: 482 ------RRTQIEVEIEEINIEQSLLVNEEQVMVTVTKEGYIKRTSLRSFATSDTMDLGVR 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           E D +  A    T   ++L++  G+   LP   L   R     + L    N        F
Sbjct: 536 ELDYVIFAQELSTYQALVLITNKGQYIHLPVHELPDIRWKDLGMHLSQQYNLTDGEQVVF 595

Query: 607 VYDS-------------TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVS-SEEK 649
           V  +                L++ + +G       ++ ++      +    +K+    ++
Sbjct: 596 VSPASRDINDQELAEYKDQYLVMATKEGMIKKTPLTDFVSYRTYKSRPSQAMKMKTETDE 655

Query: 650 MKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKI 705
           +  V  V  D    V ++ E    L + + ++ E   + +GV   + K            
Sbjct: 656 IIGVAAVKQDTVAQVILLTEKSYSLRYPLTEVSEYGLKAQGVTAINLKKDDYLAAFLLDN 715

Query: 706 ---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
                    I    R   +  ++ +    +RG  G L+ K   ++   + LS+
Sbjct: 716 QGMESQAQIILMTQRGNIKRFDNQIIADARRGSRGILMLKEL-KNNPHRVLSA 767


>gi|146329441|ref|YP_001209587.1| DNA topoisomerase IV subunit A [Dichelobacter nodosus VCS1703A]
 gi|146232911|gb|ABQ13889.1| DNA topoisomerase IV, A subunit [Dichelobacter nodosus VCS1703A]
          Length = 739

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 270/739 (36%), Positives = 417/739 (56%), Gaps = 21/739 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           SL    E+ YL YA+  I +RA+P L DG KPV RR+++AMSE+GL  G+ +KKSAR VG
Sbjct: 8   SLAAFTEKAYLDYAMYVILDRALPALADGLKPVQRRLVYAMSELGLSAGSKYKKSARTVG 67

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G+ D   S AA RYTE+++T  
Sbjct: 68  DVLGKYHPHGDSACYEAMVLMAQNFSYRYPLIDGQGNWGSADDPKSFAAMRYTESKLTAY 127

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++ + VD+   ++    EP   P++ PN+L NG SGIAVGM+T IP HN+ EI
Sbjct: 128 AHSLLAELNPETVDWTANFDGTLQEPKTLPARLPNILLNGGSGIAVGMSTDIPPHNMGEI 187

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A  AL+ NP++S E LL+ +  PDFPTGG+++ +RE I   YR G G  R+RA + +E
Sbjct: 188 VAACQALLKNPQLSEEALLQIVPAPDFPTGGVLINTREEIAHCYRTGSGSVRLRASYHIE 247

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKN 317
           +       IV+ E+PYQV  S++ E+I + I  K++  LE +RDES      R+VL P++
Sbjct: 248 KDN-----IVIDELPYQVSGSKVQEQITQQIQEKKLLWLEAVRDESDHKNPTRLVLLPRS 302

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             +D   LM+ +F  +D+E    + +N++ +   PQ+ PL  IL+EWL +R + + RR S
Sbjct: 303 HRIDKKRLMQHLFATTDLEKTVRIQLNMIGLDGKPQIKPLIVILREWLTYREQTVMRRLS 362

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
           +R+ A++ R+EIL GL IA+L +D +I IIR  D  +  ++    LT  Q +AILN+RLR
Sbjct: 363 YRLHALNERLEILAGLRIAFLQLDTVIQIIREHDDAQTALMQALPLTAAQSEAILNIRLR 422

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L KLEE  I  E   L+ E++ + +L+++   +   IA E+    + ++       RRT
Sbjct: 423 QLAKLEENAIVQEEKTLIDEQKSLQNLIDNRDARLQFIADELAADAQNYADP-----RRT 477

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           TF     A  A   +A    E +T+V+S   W+R  K+H VD   L +K GD   + + A
Sbjct: 478 TFI-KPDAKTALPARAWQPSEAVTLVLSKMAWVRLAKTHQVDGRTLAYKSGDEFLLQIAA 536

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
            +    +L   DG+ Y L   N+ S RG+GE +           IV A   D     ++ 
Sbjct: 537 KSDQTAILCGNDGRYYALSLANIASARGYGEPLSRYFSFAEKTTIVAAAALDPEQYYVLA 596

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSID 676
           ++    F+V+ S+++A T+KGK  L V     + L+     + +    +N  + LIF   
Sbjct: 597 ANNAYGFVVKGSDLVAKTKKGKAVLNVGKANALALLPLFDEESLLCALDNTGRTLIFPAR 656

Query: 677 QIPEMSRGKGVRLQSY--KD---GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
            +P+ S+GKG ++ +   K+   G     +     +    + S  RS   +  +   + G
Sbjct: 657 DLPQQSKGKGNKIMAITQKEWIQGVRLKQLLILPPQASCLLTSGKRSMQLNAQNWAPYCG 716

Query: 732 KRGGVGSLVPKGFPRSGKF 750
            RG  G  +P+ F R+   
Sbjct: 717 ARGQKGVYLPQPF-RNADV 734


>gi|161507593|ref|YP_001577547.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus DPC 4571]
 gi|160348582|gb|ABX27256.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus DPC 4571]
          Length = 818

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 214/763 (28%), Positives = 384/763 (50%), Gaps = 31/763 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++LQ +D+  V     +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+  L++++ GPDFPTG  IV   + I E+Y  GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGA-IVMGTQGIKEAYETGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQEIRGHRQEIVTTEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHM-TPVQVGLKRILSSYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR        K  +++++  T NQ +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTANQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E   L    EK   LL+  K    +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFASP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                RRT   E   A     ++A++  E + V+IS  G+++     S    D +     
Sbjct: 481 -----RRTEISE-ESAKVKIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P         +  G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEK----MKLVV 654
            FV+DS       ++ ++ G    +E + +        +  T +K+ +++     + L+ 
Sbjct: 595 VFVFDSLDIKKNFILATNDGYIKQLELTNLQPTRTYKSRAMTAIKLKNKDSMLIGVNLIN 654

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + ++I +IP    +  GV+  + KD            + L  + 
Sbjct: 655 PTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDDDYIVGYVLVDSKYLDLMH 714

Query: 714 S---AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
                 R   +     L     R   G LV +    +  + ++
Sbjct: 715 VGLITQRGAFKQFKLSLVNKVSRAKRGVLVLRELKTKPHRIVA 757


>gi|328466148|gb|EGF37307.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus MTCC 5463]
          Length = 818

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 214/763 (28%), Positives = 384/763 (50%), Gaps = 31/763 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++LQ +D+  V     +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+  L++++ GPDFPTG  IV   + I E+Y  GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGA-IVMGTQGIKEAYETGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKXADAQNILNYLFKNTDLQVSYNFNMVAIDHM-TPVQVGLKRILSSYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR        K  +++++  T NQ +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTANQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E   L    EK   LL+  K    +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFASP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                RRT   E   A     ++A++  E + V+IS  G+++     S    D +     
Sbjct: 481 -----RRTEISE-ESAKVKIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P         +  G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEK----MKLVV 654
            FV+DS       ++ ++ G    +E + +        +  T +K+ +++     + L+ 
Sbjct: 595 VFVFDSLDIKKNFILATNDGYIKQLELTNLQPTRTYKSRAMTAIKLKNKDSMLIGVNLIN 654

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + ++I +IP    +  GV+  + KD            + L  + 
Sbjct: 655 PTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDDDYIVGYVLVDSKYLDLMH 714

Query: 714 S---AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
                 R   +     L     R   G LV +    +  + ++
Sbjct: 715 VGLITQRGAFKQFKLSLVNKVSRAKRGVLVLRELKTKPHRIVA 757


>gi|58337413|ref|YP_193998.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus NCFM]
 gi|227904046|ref|ZP_04021851.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus ATCC
           4796]
 gi|58254730|gb|AAV42967.1| DNA topoisomerase IV subunit C [Lactobacillus acidophilus NCFM]
 gi|227868065|gb|EEJ75486.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus ATCC
           4796]
          Length = 816

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 215/761 (28%), Positives = 382/761 (50%), Gaps = 31/761 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   FKK
Sbjct: 5   ERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYTE+
Sbjct: 65  AAKAVGNIMGNYHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTES 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++ ++LQ +D+D V+    +++ + EP V P++FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ +P  S+E L+ Y+ GPDFPTG  I+   + I E+Y+ GRG  +VRA
Sbjct: 185 NLGEVIDATIYLLKHPNASLEDLMNYVKGPDFPTGA-IIMGTKGIKEAYKTGRGRIQVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++++      IVVTEIP++V KS L++KI E+ + K I  + ++RDE+      ++ 
Sbjct: 244 KTNIQDIRGHRQEIVVTEIPFEVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H   V+ +
Sbjct: 304 ELKKDADSQNILNYLFKNTDLQVSYNFNMVAIDHM-TPVQVGLKRILASYLEHEEAVVTK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ F +   + R+EI++GL+ A   +D++I  IR        K  +++ +  TENQ +AI
Sbjct: 363 RTKFDLNKAEARLEIIQGLIHAMDILDKVIKTIRASKNKSDAKKNLIASYDFTENQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   + +E   L    EK   LL+  K    +I  E+  VK+ F     
Sbjct: 423 VSLQLYRLTNTDVDALIAEQTKLNKLAEKYRKLLSDRKTLEKEIIKELSTVKKEFDNP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
              RRT   E   A     ++A++  E + V+IS  G+++     S    D +     +G
Sbjct: 481 ---RRTQISE-QSAKVEIDEKALVADEKVRVLISRDGYLKRSSIRSYQSTDDADNGLPDG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D +       T   + L +  G     P         +  G+ +   I L+ ++ I+  F
Sbjct: 537 DKVIYENTLSTLTNLYLFTNRGNVIYRPVHELVETKWKETGQHLSQEIGLSSDEKIIRVF 596

Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSEEKMK----LVVKV 656
            +D        L+ ++ G    +E + +        +  + + + S   +     L+   
Sbjct: 597 AFDDLNTNSNFLLATNDGYIKQLELANLQPTRTYRSRAMSAINLKSNNSLLVGVDLIAPN 656

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI--- 712
               + +       + ++I+++P    +  GV+  + KD            + +  I   
Sbjct: 657 ADKEITLFTNRAYAVRYNINEVPSSGAKAAGVKSVNLKDDDYIVGYVLVDNKYVDLIKVG 716

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
               R   +  +  L     R   G LV +    +  + ++
Sbjct: 717 LITQRGAYKQFDLNLVNKVSRAKRGVLVLRELKTKPHRIVA 757


>gi|260101485|ref|ZP_05751722.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           DSM 20075]
 gi|260084699|gb|EEW68819.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           DSM 20075]
          Length = 818

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 214/763 (28%), Positives = 384/763 (50%), Gaps = 31/763 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++LQ +D+  V     +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+  L++++ GPDFPTG  IV   + I E+Y  GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGA-IVMGTQGIKEAYETGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHM-TPVQVGLKRILSSYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR        K  +++++  T NQ +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTANQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E   L    EK   LL+  K    +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFASP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                RRT   E   A     ++A++  E + V+IS  G+++     S    D +     
Sbjct: 481 -----RRTEISE-ESAKVKIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P         +  G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEK----MKLVV 654
            FV+DS       ++ ++ G    +E + +        +  T +K+ +++     + L+ 
Sbjct: 595 VFVFDSLDIKKNFILATNDGYIKQLELTNLQPTRTYKSRAMTAIKLKNKDSMLIGVNLIN 654

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + ++I +IP    +  GV+  + KD            + L  + 
Sbjct: 655 PTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDDDYIVGYVLVDSKYLDLMH 714

Query: 714 S---AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
                 R   +     L     R   G LV +    +  + ++
Sbjct: 715 VGLITQRGAFKQFKLSLVNKVSRAKRGVLVLRELKTKPHRIVA 757


>gi|241896017|ref|ZP_04783313.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
 gi|241870748|gb|EER74499.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
          Length = 819

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 193/755 (25%), Positives = 370/755 (49%), Gaps = 33/755 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM++ G  F   F+KS
Sbjct: 6   NIQELSLEAVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNKDGNTFDKQFRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G+ID D  AA RYTEAR
Sbjct: 66  AKSVGNVMGNFHPHGDSSIYEALVRMSQDWKLRAPLIEMHGNNGSIDNDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L+ +D++ VD    +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 126 LSKLAGEMLRDLDKETVDMVLNFDDTEYEPTVLPAHFPNLLVNGATGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+ +P  S+E L+ ++ GPDFPTGG I++  + I  +Y+ GRG   VR++
Sbjct: 186 LGEVIDALIYLLAHPNASLEDLMGFVQGPDFPTGG-IIQGVDGIKSAYKNGRGRIVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +  +  G   I ++EIPY+V K+ L++KI E+ + K +  + ++RDES  D   +   
Sbjct: 245 TEIIALKGGKSQIQISEIPYEVNKATLVKKIDEIRLNKDVSGIVEVRDESDRDGLSIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            ++  +   ++  +   +D++  +     V      P+ + L   L+ +L H+ E++ +R
Sbjct: 305 LSKDANVQGILAYLLKKTDLQVTYNF-NMVAIHNLRPERVGLKTALQAFLDHQVEIITKR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + + ++    R  I+ GL+ A   +DE+IA IR+ +  K    +   ++  T  Q +AI+
Sbjct: 364 TEYDLRKAKERQHIVTGLIKALSILDEVIATIRSSEDRKNAKQNLVDKYEFTLEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +  Q+++E + L       +++L+  K    ++  E + +K+ ++     
Sbjct: 424 TLQLYRLTNTDVTQLQAEFEELSDRIMHFNAILSEPKVLRQELRQEFKSIKKEYNSP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--SALHFKEGDS 550
              R T  E    +        +  E + V++S  G+++     S          ++ D 
Sbjct: 481 ---RLTTIEADVQELKYDSTVTVADEDVAVLVSKMGYVKRSSLRSFKASGDENGLRDDDE 537

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN---HNQDIVTAFV 607
                  +T   + + +  G     P   L   +       L   ++    +++I+   +
Sbjct: 538 PLFIERVNTLQHMFIFTNKGHVIYRPIHELPEFKWKEPGEHLSQSVSGFISDEEIIHVEI 597

Query: 608 YDS----TCKLLVVSSKGNAFIVEESEI---IANTRKGKTFLKVSSEE------KMKLVV 654
            +         L  ++ G        ++       ++   ++K+ +++      +   + 
Sbjct: 598 VNDINSLEGTWLSATNDGYIKQFNFEDLTPRSTYKKRSTVYMKLKADDSSIIGLEYLSIG 657

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD-GGISDVICFKICEGLTWI 712
             +   V +  ++   L + + ++P    R  GV+  +  D   I ++      + L  I
Sbjct: 658 AASDRTVILTTKHAVGLRYDVTEVPLSGNRTAGVKAMNLADSDNIVNMSTATEKQALAII 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               R   +        +  R   G  + +   + 
Sbjct: 718 TH--RGAFKWMPVSEIPITSRARKGVAIMRELKKD 750


>gi|264677302|ref|YP_003277208.1| DNA topoisomerase IV, subunit alpha [Comamonas testosteroni CNB-2]
 gi|262207814|gb|ACY31912.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni CNB-2]
          Length = 803

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 276/793 (34%), Positives = 412/793 (51%), Gaps = 72/793 (9%)

Query: 6   ISNSNTLVEENV---KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +S+  TL         A+ L    +  YL YALS +K RA+PD+ DG KPV RRI++AM 
Sbjct: 8   MSDQTTLDLSQQAAGDALDLGQYAQRAYLEYALSVVKGRALPDVSDGLKPVQRRILYAMD 67

Query: 63  EMGLDFGAA-------FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
            MGL +            KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQ
Sbjct: 68  RMGLGYSGPNGNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQ 127

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           GNFG+ DGD AAA RYTEAR++++  L+L  +D   VDF   Y+    EP   P++ P  
Sbjct: 128 GNFGSRDGDGAAAMRYTEARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPKQLPARLPFS 187

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           L NG SGIAVG+AT IPSHN+ E+  A +ALI  P++  E+LL  I GPD+P GG I+ S
Sbjct: 188 LLNGASGIAVGLATEIPSHNLPEVAAACVALIKKPQLPEEELLALIPGPDYPGGGQIISS 247

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
              I ++YR GRG  +VRARW +EE+ RG W +VVTE+P  V   +++E+I ++   K  
Sbjct: 248 SSDIADAYRTGRGSLKVRARWKIEELARGQWQLVVTELPPGVSAQKVLEEIEDITNPKVK 307

Query: 296 PL------------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
                               L+ +RDES     VRIV  PK   +    L+ ++   + +
Sbjct: 308 TGKKALSQEQTQLKASMLAVLDCVRDESSKDAPVRIVFEPKTGKIPQSELITALLAHTSL 367

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           E+   +N+  + +   P    L  +L+EW+A R + + RRS  R++ +  R+ IL+G   
Sbjct: 368 ESSSSINLTSIGLDGRPVQKSLRQMLEEWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQA 427

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
             LNID++IAIIR  D+PK  ++  F+L+E Q + IL +RLR L +LE  +I+ EL  L 
Sbjct: 428 VLLNIDKVIAIIRASDEPKQALIDAFNLSERQAEDILEIRLRQLARLEAIKIEQELKELR 487

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
           +E+ K++ +L S       I  EI    + F  +     RRT        +K  + +  +
Sbjct: 488 SEQGKLEDILGSEATMRRLICKEIEADAKTFGDA-----RRTLI----HEEKKVVAEVKV 538

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             EP TV+IS +GW+R+ + H VD + L FK GDSL       T D++L   ++G+ Y++
Sbjct: 539 VDEPTTVIISEKGWVRTRQGHGVDAATLSFKAGDSLYGTFECRTVDQLLAFGSNGRVYSV 598

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
           P   L  GRG G+ +  +I+L     ++  F      +LL+  S    F     ++++  
Sbjct: 599 PVSALPGGRGDGQPVTTMIELEAGTQLLYYFAGSEGTQLLLSGSGAYGFTANVGDMVSRQ 658

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-----------------------DHVAVVGENRKLLI 672
           + GK F+ +   E +     V G                        HV       ++L 
Sbjct: 659 KAGKAFVTLGEGETLCAPSVVHGVPMNARAEHVEGGEQGAGLLNPASHVICASVGGRILT 718

Query: 673 FSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW- 729
           F I ++  M + G+G+ L S +D   ++    +        +D  GR        L    
Sbjct: 719 FEIAELKAMPKGGRGLMLISLEDKDQLAGAAAYTRS---IRLDGVGRGGKARTETLEIRS 775

Query: 730 ----LGKRGGVGS 738
                G RG  G 
Sbjct: 776 LNNARGNRGRKGK 788


>gi|227893711|ref|ZP_04011516.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
 gi|227864571|gb|EEJ71992.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
          Length = 818

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 215/755 (28%), Positives = 381/755 (50%), Gaps = 30/755 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+D V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L++Y+ GPDFPTG  IV   + I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGA-IVMGTKGIKEAYKTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++++      IV TEIP+ V KS L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQDIRGHRQEIVATEIPFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VVELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHM-TPVQVGLKRILASYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            +R+ + +   + R+EI++GL+ A   +D++I  IR        K  +++++  TE Q +
Sbjct: 361 TKRTKYDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTEKQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E   L    EK   LL+  K    +I  E+  VK+ FS  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQTKLNKLVEKYRKLLSDRKTLEKEIIKELSAVKKEFSNP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T      A     ++A++  E + V+IS  G+++     S    D +     
Sbjct: 481 ------RRTQISQESAKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDTDNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P         +  G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLTNLYLFTNRGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVY---DSTCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMK----LVV 654
            F +   ++    L+ ++ G    +E + +        +  T +K+ S++ +     LV 
Sbjct: 595 VFAFNNLNADENFLLATNDGYIKQLELANLQPTRTYKSRAMTAIKLKSKDSLLVGVDLVK 654

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + + I +IP    +  GV+  + KD            + L  + 
Sbjct: 655 PNAKKEITLFTHRAYAIRYDISEIPASGAKAIGVKSANLKDDDYIVGYVLVDSKYLDLMH 714

Query: 714 S---AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 R   +     L     R   G LV +   
Sbjct: 715 VGLITQRGAFKQFKLKLVNKVSRAKRGVLVLRELK 749


>gi|87301556|ref|ZP_01084396.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 5701]
 gi|87283773|gb|EAQ75727.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 5701]
          Length = 820

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 231/769 (30%), Positives = 367/769 (47%), Gaps = 35/769 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD+RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVR  Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRQVQTFASRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   +L  +  D VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPIAHQALLDEIGSDTVDFTSNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EA +ALI  PE+S EKLLE + GPDFPTGG ++     + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVEALIALIRKPELSDEKLLELVPGPDFPTGGEVLVG-SGVRDTYLQGRGSI 239

Query: 251 RVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV  G        +V+TE+PYQ+ K+  IEK+A+ +   +I  + DIRDES
Sbjct: 240 PMRGIAHIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLADQVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  +   ++  +   + +++ F   +  L     PQ + L  +L  +L
Sbjct: 300 DREGMRVVIELRRDTEASKVLTDLQRRTSLQSNFGAILLALV-NGQPQQLSLRQLLNHFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            +R   L RR+S  ++  + R+E+++GL+ A   + E+I  I+               F 
Sbjct: 359 EYREHTLIRRTSHALRRTEDRLEVVEGLIRALDALPEVIERIQAASDAASARASLQVHFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ E   L+ E+E++  LL+        +  E++ +
Sbjct: 419 LSERQADAVLAMPLRRLTSLEQDGLRKESVELMEERERLRHLLDDRAALLESMVAELKAL 478

Query: 483 KEIFSKSTDLG----------------RRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           K+ +S                      R  T        +       ++ +    V I +
Sbjct: 479 KKRYSTPRRTRLVAGGDDLVAQRAAAVRPNTELQRQQALEALPGDGRLLIQADGVVRIVS 538

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +  L    +D +A   +     ++ L       +L  S  G+   L         G 
Sbjct: 539 PQALGRLH---LDEAAPLGEHPSPARLILPVAEKPSLLAFSASGRVAMLRWEFAAQQPGS 595

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
            E       L      V       T  L ++SS G    +        + +  T LK+  
Sbjct: 596 LEKFLPEGLLGDPIVEVLPLPQKPTGTLGLLSSDGRFKRLPIEAFSELSGRAATVLKLKD 655

Query: 647 EEKMKLVVK-VTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVIC 702
             +++ VV    G  + V     +LL  +++   +P M +  +G  L     G  S V  
Sbjct: 656 GVQLRRVVPCTDGQDLVVASTTGRLLRLAVNDDTLPLMGKAAQGPMLLRLLPGE-SVVGA 714

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +  G   +  +  S  +          +RG +G +  +   R  + +
Sbjct: 715 ACVDPGSDVLLVSRHSQLKRLEVEGLRRCERGDLGQIGLRFRQREDELV 763


>gi|253996178|ref|YP_003048242.1| DNA topoisomerase IV subunit A [Methylotenera mobilis JLW8]
 gi|253982857|gb|ACT47715.1| DNA topoisomerase IV, A subunit [Methylotenera mobilis JLW8]
          Length = 761

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 267/752 (35%), Positives = 413/752 (54%), Gaps = 28/752 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  S         AV +    EE YLAYA+S +K RA+P + DG KPV RRI++AM EMG
Sbjct: 1   MDTSMLENNNEENAVPIGEYAEEAYLAYAVSVVKGRALPSVEDGQKPVQRRILYAMKEMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  G    KSAR+VG V+G  HPHGD S Y++ VRLAQ F  RYPLI GQGNFG+ DGD 
Sbjct: 61  LVAGVKPVKSARVVGNVLGMYHPHGDSSAYEAAVRLAQDFTLRYPLIDGQGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++ +A+L+L  +D   VDF+  Y+    EPV+ P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEMRLSPIADLLLSEIDRGTVDFQSNYDGAFQEPVLLPARLPMMLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT I  HN++EI  A L ++DNP  +    ++++ GPDFP GG ++     I+ +Y  
Sbjct: 181 GMATEIVPHNMREIANAVLHIMDNPNCTTADFMQHVPGPDFPGGGQLITQTADILSTYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS------------------RLIEKIA 287
           GRG  R+RARW VE + RG W I++ E+P+ V                     + I++  
Sbjct: 241 GRGSLRLRARWVVEPMARGQWRIIINELPHGVSVETIQDEILAISNPKPKKDKKTIDQDQ 300

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
            LI    + +++ ++ E  +DVR+++ PK   +  D LM  + + + ME   P+NM ++ 
Sbjct: 301 LLIKQSALSMIDTVKSEGKKDVRLIIEPKTSKVSSDELMAFLLLHTSMEVSCPVNMVMIG 360

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
               P    +  ILKEW+A R  V+ RR  F +  I++R+ IL+G +IA+L+IDE+I +I
Sbjct: 361 TDGRPAQKGMIAILKEWIAFRLNVVRRRCQFDLDKINKRIHILEGRMIAFLHIDEVIKVI 420

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           RN D+PK  +++ F L+E Q + IL +RLR L +LE ++I+ EL +L  E + + ++L S
Sbjct: 421 RNSDEPKTDLIAAFQLSEIQAEDILEIRLRQLARLEGFKIEKELKDLREEADGLQTILGS 480

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +     A EI++  E +        RRT    V R      Q+A +  EP+T+++S  
Sbjct: 481 DTKLRRLTAKEIKQDAEKYGD-----DRRTLIEPVERVQGG--QKAFVVDEPVTILLSKN 533

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           GWIR+ + H V+  A+ +K GDS    +   TT  I+LL ++G+ Y   A  +  G+G G
Sbjct: 534 GWIRARQGHGVERDAISWKAGDSEFAVIETRTTLPIVLLDSNGRCYAFDASTVPGGKGDG 593

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             +  +I++ +   +V A       + L  +S    FI     ++A  + GK F+K   +
Sbjct: 594 IPLSSIIEVQNGAKLVHALSGKDDDRYLFATSNSYGFIAPLKGLVARPKAGKAFMKPEGK 653

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKI 705
             +   + +    H+ V     KLL+F++ ++ E  + GKGVR+    D      +    
Sbjct: 654 ATILPPLALDDRTHLVVTSSENKLLVFAVTEMNEYPNGGKGVRIMDIPDNASLSRLELSN 713

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
                 +   G++     + L  ++ KR   G
Sbjct: 714 GLSANIL-VKGKAKVIEGDVLSKFIQKRARKG 744


>gi|307128512|ref|YP_003880542.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI]
 gi|306482974|gb|ADM89844.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI]
          Length = 799

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 212/753 (28%), Positives = 382/753 (50%), Gaps = 53/753 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  +++   ++  Y  Y++S I  RA+PD+RDG KPVHRR+++ M E G  F   ++
Sbjct: 4   KEKIITINIEDEMKSSYRDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALFSKNYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG V+GK HPHGD SVYD++VR+AQ +  RY LI GQGNFG+ID D  AA RYTE
Sbjct: 64  KSARIVGNVLGKYHPHGDSSVYDAIVRMAQSWSLRYLLIDGQGNFGSIDNDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++ +++E +L  ++++ VD +  +++   EP+V P+  PNLL NG+SGIAVGMAT++P 
Sbjct: 124 IKLKKISEEMLLDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNMPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  EA  + ID  +ISIE+L++YI  PDFPTGG I+   E + + +  GRG   +R
Sbjct: 184 HNIVESIEAICSYIDKKKISIEELMKYIKAPDFPTGG-IIYGYEGVKKYFLTGRGKILLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++   EE+     C++V EIPYQ+ K  LI K  +L+   ++  L +IRDES  +   ++
Sbjct: 243 SKVHFEEINNRI-CLIVDEIPYQINKEELINKTLKLVKEGKLEGLSNIRDESDRNGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           +   +++D   L+ ++F  + +ET F +N   L     P ++ L  ++K ++ HR +V+ 
Sbjct: 302 YNIKQNVDKQRLLNNLFKETSLETSFHVNNIALV-NGKPTILNLKDLIKHFVNHRHDVII 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FSLTENQVDA 430
           RR+ + +     R  I++G  I   N++ +I +I++              ++L+E QV +
Sbjct: 361 RRTKYDLNQAKNRAHIIEGFYIVLNNLETVIELIKSSKDRNDAKKKILIKYNLSEIQVKS 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL L+L SL KLE  +IK E  ++  +   +  ++++   Q   I  E+  VK  +    
Sbjct: 421 ILELKLNSLTKLENKKIKEEYIHIRKKIYFLKKIISNKFLQKKIIKKELNIVKTKYGD-- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               RRT              +  +      + I+N G+I+    +   +   +  + ++
Sbjct: 479 ---LRRTEI-------NYLGLENEVYNNKFVITITNTGYIKKNYLNKYKIGVTYKCKKNN 528

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY 608
           L+  + A     IL    +GK + L    +       +  AIQ LI +N  + I ++ + 
Sbjct: 529 LEKIIIAKNYQDILFFYENGKYFLLKVFKIPEVLKKSKGQAIQNLIKINKKEKICSSILI 588

Query: 609 DST--------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
           +            +++++  G        +   N +     +K+ +++ +        + 
Sbjct: 589 EKNNDKKYLNKNYVILITKNGIIKKTTLIQYYKNPKN---LIKIINKDYIIYAKLTNENS 645

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            + +  ++ K++ F    I         +  + K+     +IC    +    +  + + +
Sbjct: 646 EIFIAEKSGKIIKFDESTI---------KKIALKND--LYIICINDLKKEYILVVSEKGF 694

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  N +          G        ++G  ++
Sbjct: 695 VKISNSI----------GIKTINVTKKTGFLVA 717


>gi|221068510|ref|ZP_03544615.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni KF-1]
 gi|220713533|gb|EED68901.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni KF-1]
          Length = 796

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 276/793 (34%), Positives = 412/793 (51%), Gaps = 72/793 (9%)

Query: 6   ISNSNTLVEENV---KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +S+  TL         A+ L    +  YL YALS +K RA+PD+ DG KPV RRI++AM 
Sbjct: 1   MSDQTTLDLSQQAAGDALDLGQYAQRAYLEYALSVVKGRALPDVSDGLKPVQRRILYAME 60

Query: 63  EMGLDFGAA-------FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
            MGL +            KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQ
Sbjct: 61  RMGLSYSGPNGNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQ 120

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           GNFG+ DGD AAA RYTEAR++++  L+L  +D   VDF   Y+    EP   P++ P  
Sbjct: 121 GNFGSRDGDGAAAMRYTEARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPKQLPARLPFS 180

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           L NG SGIAVG+AT IPSHN+ E+  A +ALI  P++  E+LL  I GPD+P GG I+ S
Sbjct: 181 LLNGASGIAVGLATEIPSHNLPEVAAACVALIKKPQLPEEELLALIPGPDYPGGGQIISS 240

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
              I ++YR GRG  +VRARW +EE+ RG W +VVTE+P  V   +++E+I ++   K  
Sbjct: 241 SSDIADAYRTGRGSLKVRARWKIEELARGQWQLVVTELPPGVSAQKVLEEIEDITNPKVK 300

Query: 296 PL------------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
                               L+ +RDES     VRIV  PK   +    L+ ++   + +
Sbjct: 301 TGKKALSQEQTQLKASMLAVLDCVRDESSKDAPVRIVFEPKTGKIPQSELITALLAHTSL 360

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           E+   +N+  + +   P    L  +L+EW+A R + + RRS  R++ +  R+ IL+G   
Sbjct: 361 ESSSSINLTSIGLDGRPVQKSLRQMLEEWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQA 420

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
             LNID++IAIIR  D+PK  ++  F+L+E Q + IL +RLR L +LE  +I+ EL  L 
Sbjct: 421 VLLNIDKVIAIIRASDEPKQALIEAFNLSERQAEDILEIRLRQLARLEAIKIEQELKELR 480

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
           +E+ K++ +L S       I  EI    + F  +     RRT        +K  + +  +
Sbjct: 481 SEQGKLEDILGSEATMRRLICKEIEADAKTFGDA-----RRTLI----HEEKKVVAEVKV 531

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             EP TV+IS +GW+R+ + H VD + L FK GDSL       T D++L   ++G+ Y++
Sbjct: 532 VDEPTTVIISEKGWVRTRQGHGVDAATLSFKAGDSLYGTFECRTVDQLLAFGSNGRVYSV 591

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
           P   L  GRG G+ +  +I+L     ++  F      +LL+  S    F     ++++  
Sbjct: 592 PVSALPGGRGDGQPVTTMIELEAGTQLLYYFAGSEGTQLLLSGSGAYGFTANVGDMVSRQ 651

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-----------------------DHVAVVGENRKLLI 672
           + GK F+ +   E +     V G                        HV       ++L 
Sbjct: 652 KAGKAFVTLGEGETLCAPSVVHGVPMNARAEYVEGGEQGAGLLNPASHVICASVGGRILT 711

Query: 673 FSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW- 729
           F I ++  M + G+G+ L S +D   ++    +        +D  GR        L    
Sbjct: 712 FEIAELKAMPKGGRGLMLISLEDKDQLAGAAAYTRS---IRLDGVGRGGKARTETLEIRS 768

Query: 730 ----LGKRGGVGS 738
                G RG  G 
Sbjct: 769 LNNARGNRGRKGK 781


>gi|256390970|ref|YP_003112534.1| DNA topoisomerase IV subunit A [Catenulispora acidiphila DSM 44928]
 gi|256357196|gb|ACU70693.1| DNA topoisomerase (ATP-hydrolyzing) [Catenulispora acidiphila DSM
           44928]
          Length = 820

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 211/775 (27%), Positives = 372/775 (48%), Gaps = 37/775 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
              +   EE +  + +   L + Y  YA S I  RA+PD RDG KPVHRRI+  M++MGL
Sbjct: 8   PEPDEDFEERIIDIDVADELSDSYREYAYSVIYSRALPDARDGLKPVHRRILFQMNDMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DS 125
                + KSAR+VG+V+GKLHPH D ++YDSLVR+AQ +  R PL+ G GNFG++ G D 
Sbjct: 68  RPDRGYVKSARVVGDVMGKLHPHSDTAIYDSLVRMAQSWAMRIPLVDGHGNFGSLGGDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++  A ++   +DED V+F   Y+ ++ EP V PS FPNLL NG +GIAV
Sbjct: 128 PAAMRYTEARLSPAAMIMTDSIDEDTVEFGPNYDGQEQEPQVLPSAFPNLLVNGAAGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ E+  AA  LI +P  +++ L+ ++ GPD PTGG I+   + I ++Y  
Sbjct: 188 GMATNMAPHNLGEVVAAARHLIKHPNATLDDLMRFVPGPDLPTGGQII-GEQGIRDAYET 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   +E+V      IVVTE+P+     ++I K+ EL+ AK++  + D++D S
Sbjct: 247 GRGVFKMRATAKIEKVTARREGIVVTELPFNTGPEKVISKVKELVQAKKLQGITDLKDLS 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
              +   ++       +P+ ++E ++ L+ ME  F +N   L     P  + L  +L+ +
Sbjct: 307 DRFNGLKLVIEIKAGFNPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           L HR EV+ RR+ FR      R+ +++GLLIA ++ID +I IIR  D     K  +++  
Sbjct: 366 LDHRFEVVRRRTEFRRTKRVDRLHLVEGLLIALVDIDRVIRIIRESDDAAAAKENLMAAL 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +L++ Q   IL+  LR L + +  +++SE D L  E   + ++L S       ++ E+  
Sbjct: 426 ALSDKQATYILDTPLRRLTRFDSLELESERDKLTGEIRDLTAILESDTLLRKVVSDELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           + + F+       RR+   E +          + +   + ++ +     R+    +   S
Sbjct: 486 ISKQFATP-----RRSVLVEGALPVFEARPLEISDDPVVVLLSATGLLARTASGATKIGS 540

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH----------GEAIQ 591
                + D++   + +     +  ++T G+    P  +L                G  + 
Sbjct: 541 GGERGKNDAVASVVTSTIRGEVGAVTTAGRLIRFPVIDLPVLPESAAKAAPSLAGGAPVS 600

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + L  ++ ++     +     L + + +G    V         R     + +   + +
Sbjct: 601 EFVRLEEDERVLCLCSLNPESPGLALGTVQGVVKRVVPD--YPRNRDTFEVITLKDGDSL 658

Query: 651 KLV--VKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKIC 706
                ++   + +  + ++ +LL +S   +        G+   +  D   +         
Sbjct: 659 AGATELRTGEEELVFITDDAQLLKYSASLVRPQGCPAGGMAGITLSDDASVIFFGAVDPG 718

Query: 707 EGLTWIDSAGR--------SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +  AG         +  ++    L     R   G    +      + +++
Sbjct: 719 HDGLIVSMAGSDDALVEAATTMKATPYALYPTKGRATGGVRCQRFLKGEHRLVAA 773


>gi|299530846|ref|ZP_07044261.1| DNA topoisomerase IV subunit A [Comamonas testosteroni S44]
 gi|298721362|gb|EFI62304.1| DNA topoisomerase IV subunit A [Comamonas testosteroni S44]
          Length = 796

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 276/793 (34%), Positives = 412/793 (51%), Gaps = 72/793 (9%)

Query: 6   ISNSNTLVEENV---KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +S+  TL         A+ L    +  YL YALS +K RA+PD+ DG KPV RRI++AM 
Sbjct: 1   MSDQTTLDLSQQAAGDALDLGQYAQRAYLEYALSVVKGRALPDVSDGLKPVQRRILYAMD 60

Query: 63  EMGLDFGAA-------FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
            MGL +            KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQ
Sbjct: 61  RMGLGYSGPNGNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQ 120

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           GNFG+ DGD AAA RYTEAR++++  L+L  +D   VDF   Y+    EP   P++ P  
Sbjct: 121 GNFGSRDGDGAAAMRYTEARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPKQLPARLPFS 180

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           L NG SGIAVG+AT IPSHN+ E+  A +ALI  P++  E+LL  I GPD+P GG I+ S
Sbjct: 181 LLNGASGIAVGLATEIPSHNLPEVAAACVALIKKPQLPEEELLALIPGPDYPGGGQIISS 240

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
              I ++YR GRG  +VRARW +EE+ RG W +VVTE+P  V   +++E+I ++   K  
Sbjct: 241 SSDIADAYRTGRGSLKVRARWKIEELARGQWQLVVTELPPGVSAQKVLEEIEDITNPKVK 300

Query: 296 PL------------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
                               L+ +RDES     VRIV  PK   +    L+ ++   + +
Sbjct: 301 TGKKALSQEQTQLKASMLAVLDCVRDESSKDAPVRIVFEPKTGKIPQSELITALLAHTSL 360

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           E+   +N+  + +   P    L  +L+EW+A R + + RRS  R++ +  R+ IL+G   
Sbjct: 361 ESSSSINLTSIGLDGRPVQKSLRQMLEEWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQA 420

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
             LNID++IAIIR  D+PK  ++  F+L+E Q + IL +RLR L +LE  +I+ EL  L 
Sbjct: 421 VLLNIDKVIAIIRASDEPKQALIDAFNLSERQAEDILEIRLRQLARLEAIKIEQELKELR 480

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
           +E+ K++ +L S       I  EI    + F  +     RRT        +K  + +  +
Sbjct: 481 SEQGKLEDILGSEATMRRLICKEIEADAKTFGDA-----RRTLI----HEEKKVVAEVKV 531

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             EP TV+IS +GW+R+ + H VD   L FK GDSL       T D++L   ++G+ Y++
Sbjct: 532 VDEPTTVIISEKGWVRTRQGHGVDAGTLSFKAGDSLYGTFECRTVDQLLAFGSNGRVYSV 591

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
           P   L  GRG G+ +  +I+L     ++  F    + +LL+  S    F     ++++  
Sbjct: 592 PVSALPGGRGDGQPVTTMIELEAGTQLLYYFAGSESTQLLLSGSGAYGFTANVGDMVSRQ 651

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-----------------------DHVAVVGENRKLLI 672
           + GK F+ +   E +     V G                        HV       ++L 
Sbjct: 652 KAGKAFVTLGEGETLCAPSVVHGVPMNARAEYVEGGEQGAGLLNPASHVICASVGGRILT 711

Query: 673 FSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW- 729
           F I ++  M + G+G+ L S +D   ++    +        +D  GR        L    
Sbjct: 712 FEIAELKAMPKGGRGLMLISLEDKDQLAGAAAYTRS---IRLDGVGRGGKARTETLEIRS 768

Query: 730 ----LGKRGGVGS 738
                G RG  G 
Sbjct: 769 LNNARGNRGRKGK 781


>gi|33239457|ref|NP_874399.1| Type IIA topoisomerase, A subunit, ParC [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33236982|gb|AAP99051.1| Type IIA topoisomerase, A subunit, ParC [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 828

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 226/772 (29%), Positives = 372/772 (48%), Gaps = 43/772 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E  + +SL   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAKERFQPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPERP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYP++ G GNFG+ID D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYDALVRLVQSFSSRYPVLDGHGNFGSIDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A + +L  +D+  VDF   ++    EP V P++ P L+ NG SGIAVGMAT+
Sbjct: 121 TETRLAPIANQALLNEIDDKTVDFSQNFDGSQQEPDVLPAQLPFLVLNGCSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI    +ALI  PE+S +KL+E I GPDFPTGG I+ S   I E+Y  G+G  
Sbjct: 181 IPPHNINEIINGLIALIKKPELSEDKLIEIIPGPDFPTGGEILLS-NGIKETYLKGKGSI 239

Query: 251 RVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EE+  G        IV+TE+PYQV K+  IEK+A+L+   +I  + DIRDES
Sbjct: 240 PMRGITHIEEINPGKGKHRKKGIVITELPYQVNKAAWIEKLADLVNNSKIDGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R +D +++ ++++  ++++  F   +  L     P+ + L  +L  +L
Sbjct: 300 DRDGMRIVIELRRDIDHEIVKDTLYQKTNLQNNFSATLLALV-NGQPKQLSLKRLLIIFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---S 422
            +R   + +R+  +++    R+EIL+GL+ A  N+ ++I +I N        +       
Sbjct: 359 EYRELTIRKRTKNKLKQTLARLEILEGLIKALKNLKKVINLIENAKDSIDAKIKIMSELK 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q + IL++ LR L  LE   + +E ++L   ++ +  +L +  Q  +++  E++ +
Sbjct: 419 LNEKQSEGILSMPLRKLTNLETQGLYNEANDLKILEKNLREILENRSQLLSEMVNELKLL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIRSLKSHS 537
           K+ F       +R+T   E      A     +              +   G++       
Sbjct: 479 KKKFG-----SQRKTKLVEGGDELVAERNANLRPNAELQRKKAFESLPKDGYLLIQDDDQ 533

Query: 538 VDLSALHFKEGDSLKIA-------------LHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           V +         +L  +                    +IL ++  GK   L        +
Sbjct: 534 VKILRPQILTKLNLTESCLLGEGPVPTRLLWPIAKQPKILAITNHGKIALLK-WEFAGSQ 592

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  L   L   + I             L ++S+ G       +EII  + +  T L
Sbjct: 593 PGQLNRFLPSGLE-GEKITNLLPLLNTENLSLGLLSTDGRFKRTNLNEIIDISGRATTIL 651

Query: 643 KVSSEEKMKLVVKVT-GDHVAVVGENRKLL--IFSIDQIPEMSR-GKGVRLQSYKDGG-I 697
           K+     +K  +      H+ VV    +++    + + IP M +  +G  +     G  I
Sbjct: 652 KLKDGVFLKSALLCPLNGHLLVVTNIGRIIKLKINEESIPLMGKLAQGSVMIKLFPGENI 711

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
              +  K  E    I  + +      +        +G +G +      ++ +
Sbjct: 712 IGALTTKEKENCNIILISEKGTVIKHSLKSIKESSKGDLGEIGISFKDKNNQ 763


>gi|323359916|ref|YP_004226312.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
 gi|323276287|dbj|BAJ76432.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
          Length = 817

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 231/775 (29%), Positives = 370/775 (47%), Gaps = 33/775 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S S++ V E ++ V +   ++  +L YA S I  RA+PD RDG KPV RRI++ M+EMGL
Sbjct: 4   SRSSSPVSERIEDVDVSTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYQMAEMGL 63

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                  KSAR+VGEV+GKLHPHGD  +YD+LVRLAQ F  R PL+ G GNFG++D D  
Sbjct: 64  RPDRGHVKSARVVGEVMGKLHPHGDAPIYDALVRLAQAFSLRVPLVDGHGNFGSLD-DGP 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+   A  + + +DED VDF   Y+ +  +P V P+ FPNLL NG +GIAVG
Sbjct: 123 AAPRYTEARLAAAALALTENLDEDVVDFIPNYDGQFQQPEVLPAAFPNLLVNGATGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++  HN+ E+  AA  L+ NP+ ++E+L+E++ GPD P+GGIIV   + I ++Y  G
Sbjct: 183 MATNMAPHNLIEVVGAATHLLQNPDATVEELMEFVPGPDLPSGGIIV-GLDGIKDAYTNG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG FR RA+  +E +G     IV+TE+PY V   R+IEKI + + AK++  + D+ D + 
Sbjct: 242 RGSFRTRAKSSIESLGPRRTGIVITELPYLVGPERVIEKIKDAVQAKKLTGIADVTDLTD 301

Query: 307 EDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    ++       DP  ++E ++ L+ +E  F +N   L     PQ + L  +L+ ++
Sbjct: 302 RNNGLRLVIGIKTGFDPKAVLEQLYRLTPLEDSFGINNVALVD-GQPQTLGLRDMLRVYI 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            HR  V+ RRS +R+     R+ +++GLLIA L+IDE+I +IR+ D     +  +   F 
Sbjct: 361 DHRIRVVTRRSEYRLARKRERLHLVEGLLIAILDIDEVIQVIRSSDDGEQARTKLQEVFD 420

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q + IL LRLR L K    ++++E D L AE  ++  LL S      Q+A E+   
Sbjct: 421 LSHPQAEYILELRLRRLTKFSRIELEAERDQLNAEIAQLVELLGSETLLRQQVAKELDAA 480

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
            E +              +   A  A      I   P  V +S  G +   +  +     
Sbjct: 481 AEAYGTPRRTLLLNGGPVQPRSAKAAAAADLQIADAPCRVYLSATGRMVRAELIADAPAG 540

Query: 541 ---SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL------PAGNLLSGRGHGEAIQ 591
                    + D+++ A+   T   I  +++ G+                     G  ++
Sbjct: 541 GVVPPTRRSKHDAIRSAVDTTTRGEIGAVTSAGRLVRFSPVDLPSVPANSVQLAAGTKVE 600

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             + L   + +V          + + + +G    V  SE+   T+     + +   +++ 
Sbjct: 601 QYLALAKGETVVALVPLSDGPTIALGTEQGVVKRVAASELG--TKPEIEIIALRDGDRVV 658

Query: 652 LVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS----------- 698
                  +  +  V  + +LL F    +    R   G+      DG              
Sbjct: 659 GAAPAGDNAELVFVASDAQLLRFDASSVRPQGRSASGMAGIRLSDGARVIAFAVIGASAF 718

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           D +   +      +        +           R   G    +        + +
Sbjct: 719 DAVVVTVAGSTAALPGTDAGSAKVSAFTEYPAKGRATGGVRAQRLLRGEDALVLA 773


>gi|218281305|ref|ZP_03487793.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989]
 gi|218217490|gb|EEC91028.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989]
          Length = 827

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 225/757 (29%), Positives = 391/757 (51%), Gaps = 24/757 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
              V+ NV   SL   + +R+  Y+   I+ERA+PD RDG KPV RRI++AM E G  + 
Sbjct: 3   EKEVKHNVLKNSLEDIMADRFARYSKYIIQERALPDARDGLKPVQRRILYAMYEDGNTYN 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSA+ VG VIG  HPHGD SVYD++VR++Q +    PLI  QGN G+ID D AAA 
Sbjct: 63  KPYHKSAKTVGNVIGNYHPHGDSSVYDAMVRMSQNWKITNPLIDMQGNNGSIDDDPAAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+ ++++ +LQ +D+D V++   +++E  EP V P++FPNLL NG +GIA G AT
Sbjct: 123 RYTEARLARISDFLLQDIDKDTVEWAPNFSDEKMEPTVLPARFPNLLVNGITGIAAGYAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +A++  I +P+ S+E+L++++ GPDFPTGG IV   + I ++++ GRG 
Sbjct: 183 NIPPHNLNEVIQASIYRISHPDCSLEELMQFVKGPDFPTGG-IVMGLDGIKQAFQTGRGR 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R++  V  +      I++ EIPY+V KS L++KI E+ + K+I  + D+RDES    
Sbjct: 242 VLIRSKVEVVPLR-TIKQIIIHEIPYEVIKSNLVKKIDEIRLNKKIDGILDVRDESDRTG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  + + ++  ++  +D++  +  N+  +   + P  M L  +L  +++HR 
Sbjct: 301 LRIVVDLKKDSNDEQILNYLYKNTDLQISYNYNVIAIV-NKAPVQMSLAMMLDAFISHRE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           +V+ RRS F ++    R  IL+GL+ A   +DEII IIR        K  ++ RF  TE 
Sbjct: 360 DVVIRRSKFDLKTKKERAHILEGLIKAVSVMDEIIHIIRKSKDKSHAKKNLIERFDFTEK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AI+ +RL  L   +  ++K+E   L  +  +++ ++    +    +  E+ +V   F
Sbjct: 420 QAEAIVVMRLYRLTNTDVKELKAEFKQLQCDIAELEKIIRDKSELHKVMVEELEKVNAEF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +        R +       +    ++AMI KE   + ++  G+I+ +   S + S+    
Sbjct: 480 NTP------RLSKIVHEVKEIVIDEKAMISKEECMITVTRDGYIKRVSMRSFNASSDSMT 533

Query: 547 EGDSLKIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
           +       +     HT   ++  +  G    +P   +   +       I   I ++ ++ 
Sbjct: 534 QRKDTDSLVCYGASHTLQTLIFFTNRGTYGYIPVYQIEEAKWKDLGGHISNYIKMDSSEK 593

Query: 602 IVTAFVYDSTC---KLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV- 656
           I+ A+V D+      ++  S  G     E  E  ++ + K  T +K+   ++M  V    
Sbjct: 594 IIAAYVLDAFKTGVHVVSASRHGMIKRTELKEFEVSRSNKTMTCMKIGGMDEMISVSLSY 653

Query: 657 -TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
              D V +V E    L++ ++QIP +S + KGV+  +         IC +       + S
Sbjct: 654 KPDDQVILVSEQGYGLMYPVEQIPLVSNKSKGVKAMNLAKDDCVASICIRKNRDEQVLIS 713

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 +    L      R   G+ + K    +   +
Sbjct: 714 TTTLSLKRMKQLEIAPLNRPAKGNRICKLVKSNPNVI 750


>gi|330814139|ref|YP_004358378.1| topoisomerase IV subunit A [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487234|gb|AEA81639.1| topoisomerase IV subunit A [Candidatus Pelagibacter sp. IMCC9063]
          Length = 752

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 302/744 (40%), Positives = 477/744 (64%), Gaps = 21/744 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            + N+    L+    ++YLAYALSTI +RA+PD+RDG KPVHRR+I+AM  + L   ++F
Sbjct: 4   NKNNITEEQLKNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMHLLDLTSKSSF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGDQSVYD+LVRLAQ F  +YPLI+GQGNFGNIDGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTKYPLINGQGNFGNIDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++T+V+E +L+ +  + V+FR TY+ E SEP V P+ FPNLLANG+SGIAVGMAT+IP
Sbjct: 124 ETKLTEVSEFLLKDIGSETVNFRKTYDGELSEPTVLPAAFPNLLANGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EIC + + L ++ + SI  LL+ + GPDFPTGGI+   ++ ++++Y  GRG F +
Sbjct: 184 PHNLEEICSSIIHLNNHRDCSIRDLLKILKGPDFPTGGILNLDQKEMIKTYTTGRGFFEL 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA++ VE++ +G + + +++IPYQV KS+LIEKIA+LII K+  L++++ DES E++R+V
Sbjct: 244 RAKYKVEDLSKGQYQVSISQIPYQVNKSKLIEKIADLIINKKNKLIDNVIDESDENIRVV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           + PKNR++DP +LM S++  +D+E +F LNMNVL+    P+VM +  IL  +L HR  +L
Sbjct: 304 IRPKNRNIDPVVLMNSLYQQTDLEIKFFLNMNVLNHKLEPKVMSIKEILYSFLKHRYIIL 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            ++S F +  I+ R+EILKG LIA+ N++ II IIRN + PK  +V ++  TENQV+AIL
Sbjct: 364 EKKSKFALNKINIRLEILKGFLIAFKNLNNIIKIIRNSNNPKAELVKKYRFTENQVNAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++LRSLRK+EE +IK E   LL +K+ +  LL+S   Q  +I  E+ ++   F  ++  
Sbjct: 424 DMKLRSLRKIEEKEIKEENSKLLNKKKLLMKLLSSKSLQKKEINKEMEDLILQFGNNSAY 483

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           G R+T   + +R + + L + +   +PIT ++   G++++   +SV    ++    ++  
Sbjct: 484 GLRKTVIEKFNRIESSELDEELKSTDPITAILLKTGFLKAKIGYSV--CKVNADFSENEH 541

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           + ++   +D+ + LS+ GK+YTL   NL+ G   G+       L  N++IV +F+Y +  
Sbjct: 542 LYVNGRKSDKFIFLSSFGKSYTLDGENLVFGSQKGKPFSSYFSLKENEEIVDSFLYKNNE 601

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRK- 669
           K+L+ SS G  F +    +I+N + GK    +   + +   V++  D   + ++ +N+K 
Sbjct: 602 KILLCSSNGYGFFINSDNLISNKKSGKKVFNIKKNDFLHSSVQIHKDQKYIFLLTKNKKE 661

Query: 670 --LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
               + S+  IP     KGV +  +K   +S      +      +D+      +S N   
Sbjct: 662 NRASVISMKDIPTQE--KGVGIILFKGKKVSLFALSTVSAKFEMLDNYTTPVKKSLNLKK 719

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFL 751
                      L+P+   ++GK +
Sbjct: 720 F----------LIPRT--KNGKII 731


>gi|295426265|ref|ZP_06818925.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064004|gb|EFG54952.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus
           amylolyticus DSM 11664]
          Length = 824

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 211/754 (27%), Positives = 377/754 (50%), Gaps = 29/754 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F   F
Sbjct: 3   NKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTFDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ L+LQ +D++ V     +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNLLLQDIDKNTVKMVLNFDDTEYEPTVLPAQFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +PE S+E L++++ GPDFPTG  ++   + I E+Y+ GRG  +V
Sbjct: 183 PHNLAEVIDATIYLLKHPEASLEDLMQFVKGPDFPTGA-VIMGTKGIKEAYQTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    ++ D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKNADAENILNYLFKNTDLQVSYNFNMVAIDHM-TPVQVGLKRILSSYLEHDEDVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            +R+ + +   + R+EI++GL+ A   +D++I  IR        K  ++  F  TE Q +
Sbjct: 361 TKRTKYDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIKEFKFTERQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   + +E ++L  +      LL+       +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVDALIAEQNDLNKKVAVYQKLLSDRATLEKEIIKELTAVKKNFASP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T      A     ++A++  E + V++S  G+++     S    D +     
Sbjct: 481 ------RRTQISHESAKVEIDEKALVADEQVRVLVSRDGYLKRSSLRSYQSSDEADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           E D +       T D + L +  G     P         +  G+ +   + L  ++ I+ 
Sbjct: 535 ENDKVVYEKTLSTLDNLYLFTNRGNLIYRPVHELTETKWKETGQHLSQEVGLATDEQIIR 594

Query: 605 AFVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSEEK---MKLVVK 655
            F +   D     L+ ++ G    V+ S++        +  T +K+ SE+       ++K
Sbjct: 595 VFDFDKLDKNVDFLMATNDGYIKQVKLSDLQPTRTYRSRAITAMKMKSEDSKMIRIDLIK 654

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWI-- 712
                + +       + + + +I E   +  GV+  + KD            E    I  
Sbjct: 655 TNSGEITLFTHRAYAVKYDVSEISEFGGKALGVKSVNLKDDDYVVGYVLVQPEFADLIKV 714

Query: 713 -DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                R   +     L     R   G +V +   
Sbjct: 715 GLITQRGAFKQFKLSLVNKVSRAKRGVMVLRELK 748


>gi|160914999|ref|ZP_02077212.1| hypothetical protein EUBDOL_01006 [Eubacterium dolichum DSM 3991]
 gi|158432798|gb|EDP11087.1| hypothetical protein EUBDOL_01006 [Eubacterium dolichum DSM 3991]
          Length = 835

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 217/754 (28%), Positives = 375/754 (49%), Gaps = 27/754 (3%)

Query: 6   ISNSNTLVEEN---VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +   + + E +   + A  L   +  R+ +Y+   I++RA+PD RDG KPV RRI++AM 
Sbjct: 1   MKKKDDIFEHDNSTIIATPLEEIMGSRFGSYSKYIIQDRALPDARDGLKPVQRRILYAMY 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G  +  A++KSA+ VG VIG  HPHGD SVYD++VR++Q +  R+P I  QGN G+ID
Sbjct: 61  EDGNLWDKAYRKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQEWKIRHPQIDMQGNNGSID 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTEAR+ +++E +L+ +++D V +   +++   EP V P+ +PNLL NG +G
Sbjct: 121 DDPAAAMRYTEARLGKISEYLLKDIEKDTVTWSLNFDDTAYEPTVLPASYPNLLVNGITG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IA G AT+IP HN+ E  +A +  I NP+ S+E+L+EY+ GPDFPTG  IV+  + I ++
Sbjct: 181 IAAGYATNIPPHNLNEAIQATIYRIRNPKCSLEELMEYMHGPDFPTGA-IVQGIDGIKDA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           +R G+G   +R++  +E+       I+V EIPY+V KS +++KI E+ + K+I  + D+R
Sbjct: 240 FRTGKGRIMIRSKVSIEQTK-TIQQIIVHEIPYEVVKSNMVKKIDEVRLNKKIEGILDVR 298

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   V+    +  D  L++  ++  +D++  +  N+  +   + P  M L  +L 
Sbjct: 299 DESDRNGLRVVIDIKKDADAQLILNYLYKNTDLQVSYNYNVVAIV-NKRPVQMGLVAMLD 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            ++AHR EV+ +RS + +   ++R  IL+GL+ A   +DEIIA+IR+             
Sbjct: 358 AFIAHRVEVIEKRSRYDLDKKEKRCHILEGLIRAISVLDEIIALIRSSKDKADSKRKIIE 417

Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
               +E Q +AI+ +RL  L   +   ++ E + L  E   +  +L+  K     +  E+
Sbjct: 418 AFSFSEEQAEAIVTMRLYRLSSTDITLLQEESEQLQKEIAHLHCILDDPKVLRKVMIQEL 477

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           + V   F          T    V        ++       +   +S  G+ + +   S +
Sbjct: 478 KAVNTAFPTPRLTKIEETIEEIVIDKLAMINEEQ------VMFTLSRDGYAKRVSLRSYN 531

Query: 540 LSALHFKEGDSLKIALHA---HTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLI 594
            S+            +      T D+IL  +  G    +P         +  G  +   I
Sbjct: 532 ASSDSLCGLKEGDRLIGCGEVSTLDKILFFTNMGTYGYVPVYELEEAKWKDVGTHLNAGI 591

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKM 650
            +   + I  AFV   + S   ++ V+  G       SE  ++   K  + +K+   +++
Sbjct: 592 RMRGEEKITDAFVVKSFQSQAYVVSVTRMGLIKKSALSEYEVSRNNKTMSNMKLLDGDEV 651

Query: 651 K-LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEG 708
               +   GD + +  E    + + +D +P  S R KGV+     D  I D  C    + 
Sbjct: 652 IRSFIAYDGDEIFIASETGFAVRYPLDMVPLTSPRSKGVKAMKLVDDVIGDA-CIYHQDN 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              +  +     +        +  R   G+++ K
Sbjct: 711 KQLVVFSKNGAVKRMKLSEIEITGRPAKGNMLCK 744


>gi|256825410|ref|YP_003149370.1| DNA topoisomerase IV subunit A [Kytococcus sedentarius DSM 20547]
 gi|256688803|gb|ACV06605.1| DNA topoisomerase IV subunit A [Kytococcus sedentarius DSM 20547]
          Length = 823

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 225/775 (29%), Positives = 366/775 (47%), Gaps = 47/775 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + T V + V  + +   +   +L YA S I  RA+PD RDG KPV RRI+  M E+GL  
Sbjct: 10  TPTQVADTVIDIDVEEEMSSAFLEYAYSVIYSRALPDARDGLKPVQRRILFGMDELGLRP 69

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KS+R+VGEV+GK HPHGD ++YD+LVRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 70  DRGYVKSSRVVGEVMGKYHPHGDTAIYDALVRLAQPFSMRVPLVDGHGNFGSLD-DGPAA 128

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM   A L+ Q +DED VD    Y+++  +P V P+ +PNLL NG SGIAVGMA
Sbjct: 129 SRYTEARMAPAALLMTQTLDEDTVDMVPNYDDQLLQPEVLPAAYPNLLVNGASGIAVGMA 188

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+I  HN+ E+  AA  L+DNP  ++E L+ ++ GPD P GG IV   + I ++YR GRG
Sbjct: 189 TNIAPHNMGEVIAAARHLLDNPGATVEDLMRFVPGPDLPGGGRIV-GLDGIRDAYRTGRG 247

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
            FR RA   +E V      IVVTE+PY V   ++I K+   + AK++  + D++D +   
Sbjct: 248 SFRTRATVRIENVTPRRKGIVVTELPYLVGPEKVIAKLKTQVQAKKLQGIADVKDLTDRH 307

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++       +P+ ++  ++  + ME  F +N   L     P+ + L  +L  ++  
Sbjct: 308 KGLQLVIEVKNGFNPEAVLAQLYKQTPMEESFGINNVALVD-GQPRTLGLRELLAVYVDF 366

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLT 424
           R EV+ RR+ FR++    R+ +++GLL+A L+IDE+I +IR+ D        ++  F L+
Sbjct: 367 RCEVVRRRTEFRLRKRQERLHLVEGLLLAILDIDEVIQLIRSSDDTAEARTRLMQVFDLS 426

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q + IL L+LR L K    ++++E D+LL   E++ ++L         ++ E+  V +
Sbjct: 427 ELQANYILELQLRRLTKFSRIELETERDDLLRAIEELQAILADEALLRRVVSDELAAVAK 486

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK---------- 534
             +      RR       + A         +  +P+TVV+S  G +  +           
Sbjct: 487 EHATP----RRTVLLESEAAAAMTPAAPLEVADDPVTVVLSATGLVARVPRGEDTPSVLS 542

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG------- 587
              V  +     + D+L   + +     + L+++ G+   L   +L +  G         
Sbjct: 543 RDDVRAAGAGRVDHDALASVVASTARGTVGLVTSTGRLVRLSVVDLPALPGSDALGMAGG 602

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             +    +L   +  +     +       L + ++ G    V         +     + +
Sbjct: 603 APLAAFTELAGGERPLALVRVEGAEDSPGLALATAGGVVKRVRPD--YPGGKDSFEVITL 660

Query: 645 SSEEKMKLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS--D 699
           +  +++   V      + +  V +   LL +S   +    R G GV      +G      
Sbjct: 661 ADGDELVGAVELATGEEDLVFVTDAAALLTYSASLVRPQGRSGSGVAGIKVPEGQRVLGF 720

Query: 700 VICFKICEGLTWIDSAGR---------SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                  E    +  AG             +           R   G    +   
Sbjct: 721 AAVPAASEDAMVVTVAGSSGALPGTDAGTVKVTPLSAYPAKGRATAGVRCHRLLK 775


>gi|227543441|ref|ZP_03973490.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri CF48-3A]
 gi|300910108|ref|ZP_07127568.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           SD2112]
 gi|227186593|gb|EEI66664.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri CF48-3A]
 gi|300892756|gb|EFK86116.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           SD2112]
          Length = 821

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/750 (28%), Positives = 375/750 (50%), Gaps = 28/750 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 1   MRNGKIEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD  AA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A + LI +P  S++KL+E+I GPDFPTGGII    + I ++Y+ GRG   
Sbjct: 181 PTHNLSEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQG-IDGIRKAYQTGRGRVV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E +      I VTEIPY+V K++L+++I +L +AK++  + + RDE+      
Sbjct: 240 VRAKTEIETLRGDRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R  + + ++  +   +D++  +  NM  +   R P  + L  IL  +L  ++E+
Sbjct: 300 IAIELKRGANANGILNYLLKNTDLQINYNFNMVAIDDQR-PMRVGLKRILTSYLEFQKEI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ + +    +R+ I++GL+ A   +D++I  IR        K  +V  ++ T  Q 
Sbjct: 359 IRRRTQYNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLVKEYNFTPEQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +  ++K E + L +   +   +L +  +    +  EIR +K+ F  
Sbjct: 419 EAIVTLQLYRLTNTDVTELKKEQEQLNSRINEYQLILTNENELAKVLTKEIRAIKKEFGN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                  R T  E          +  +  E + V++S+ G+I+     S    +      
Sbjct: 479 P------RRTKIENLVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSFKASEAEENGL 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIV 603
           +E D   +    +T   + + +  G     P         +  GE I   I L  N++I+
Sbjct: 533 REDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKDTGEHISQTIGLADNEEII 592

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEI---IANTRKGKTFLKVSSEEKMKLV---V 654
            A ++   D    +++ +S G       ++              +K+    ++  V    
Sbjct: 593 KAMIFDKLDQPGTIIMGTSDGQVKQTAFNDYKPGSRYKSHASVAIKLRDNAQVVNVDYYE 652

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
               +  +  +      + + +  +P    R  GVR  + KD          + +G    
Sbjct: 653 PTNENRSLLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQV-ADQILVKDGQDIA 711

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
               R   +        +G R   G LV +
Sbjct: 712 VITQRGAFKEMPVDEIEVGARARRGELVLR 741


>gi|311898783|dbj|BAJ31191.1| putative type II topoisomerase [Kitasatospora setae KM-6054]
          Length = 816

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 231/767 (30%), Positives = 374/767 (48%), Gaps = 36/767 (4%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + +      EE +  V +   ++  +L YA S I  RA+PD RDG KPVHRRI++  +EM
Sbjct: 6   SPTPPPGDFEERILDVDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRILYQANEM 65

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-G 123
           GL       K AR+VGEV+G+LHPHGD S+YD++VRLAQPF  R PLI G GNFG++   
Sbjct: 66  GLRPERGHVKCARLVGEVMGRLHPHGDASIYDAVVRLAQPFSMRLPLIDGHGNFGSLGND 125

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTE+R+T  +  +++ + ED VDF   Y+  + EP V PS FPNLL NG +GI
Sbjct: 126 DPPAAMRYTESRLTAASMSMVESIHEDTVDFGPNYDGSEQEPQVLPSAFPNLLVNGATGI 185

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT++P HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     I ++Y
Sbjct: 186 AVGMATNMPPHNLAEVVAAARHLIKHPAADLETLMRFVPGPDLPTGGRIV-GLSGIRDAY 244

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG F++RA   +E V      IVVTE+PY V   ++I KI +L+ AK++  + D++D
Sbjct: 245 ESGRGTFKIRATTSIENVTARRKGIVVTELPYTVGPEKVIAKIKDLVNAKKLQGIADVKD 304

Query: 304 ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            +  +    ++        P+ L+E ++ L+ ME  F +N   L     P  + L  +L+
Sbjct: 305 LTDREHGLRLVIEVKNGFVPEALLEQLYKLTPMEETFGINNVALVD-GQPLTLGLKELLE 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            ++ HR  V+ RRS FR +    R+ +++GLL+A ++IDE+IA+IR+ D     K  ++ 
Sbjct: 364 VYVDHRFTVVKRRSDFRRRKRQDRLHLVEGLLVALVDIDEVIAVIRSSDDAGQAKDRLME 423

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L+E Q   IL+  LR L + +  ++++E   LL E  ++  +L S  +  + ++ E+
Sbjct: 424 RFGLSETQTAYILDTPLRRLTRFDRVELEAEQSKLLKEIAELTEILESDHKLRSVVSSEL 483

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADK-ATLQQAMIEKEPITVVISNRGWIRS-LKSHS 537
             V + F        RRT   E       A      +  +P  V++S+ G +        
Sbjct: 484 GSVAKQFGTE-----RRTVLLEAGSVPSAALAVPLEVADDPCRVLLSSTGLLARTFDLKP 538

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG------EAIQ 591
           V   +    + D L  A+ A     + L++T G+   LP  +L +            A+ 
Sbjct: 539 VTEESAARAKHDVLASAVPATARGDVGLVTTAGRVLRLPVIDLPALPPGTAALSGGAAVS 598

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + L   +  +     D +   L + + +G    V         +     + +   + +
Sbjct: 599 EFLRLEDGERPIALTTLDESSPGLALGTVQGVVKRVVPE--WPANKDEFEVIALKDGDAV 656

Query: 651 KLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKIC 706
              V  +   + +  +  + +LL +  +Q+    R   G+      DG  +         
Sbjct: 657 VGAVELRTGEEDLVFITSDAQLLRYQANQVRPQGRPAGGMAGIKLADGARVLSFGAVDPA 716

Query: 707 EGLTWIDSA---------GRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +    +  A          +S  +           R   G    +  
Sbjct: 717 QDAVVLSVAAATGTLAGEEQSSWKLTPFDQYPRKGRATGGVRCQRFL 763


>gi|315604333|ref|ZP_07879399.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315314039|gb|EFU62090.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 822

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 223/785 (28%), Positives = 373/785 (47%), Gaps = 42/785 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +        +EN+  + +   +   +L YA+S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MAKKDHVVDIPEADENISEIDVSAEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MGL       KS R+VGEV+GKLHPHGD ++Y++LVRLAQPF  R PL+ G GNFG+
Sbjct: 61  MDQMGLRPDKGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEARM   A  ++ G+DED VDF   Y+ +  +P V P+ FP LL NG 
Sbjct: 121 LD-DGPAAARYTEARMAPSAVDLVTGLDEDTVDFVPNYDNQFMQPEVLPAAFPQLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+I  HN+ E     + L+D+P  S+  L+ YI GPD P GG ++   + I 
Sbjct: 180 SGIAVGMATNIAPHNLCEAIAGVIHLLDHPSASVADLMRYIPGPDLPEGG-VIVGLDGIK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG F+ RA+  +E V      IVVT++PY V   ++IEKI E   A R+  +  
Sbjct: 239 DAYETGRGAFKTRAKVQIERVTARKMGIVVTQLPYMVGPEKVIEKIKENASAGRLKGISS 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +++ +       ++       +P+ +++ ++  + +E  F +N   L  G  P+ + L  
Sbjct: 299 VQNLTDRVHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALV-GGQPRTLGLKE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ +L HR +V  RRS FR+   + R+ +++GLL+A L+ID++IAIIR+ D     +  
Sbjct: 358 MLQVFLDHRLDVTTRRSRFRLGKCEDRLHLVEGLLVAILDIDDVIAIIRSSDDAEVARER 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++ F L+E Q   IL LRLR L K    +++SE D L+A+  ++  +L+  +     + 
Sbjct: 418 LMTAFDLSEAQATYILELRLRRLTKFSRIELESERDELVAKIAQLREILDDPELLRALVK 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-------------QAMIEKEPITVV 523
            E+REV +            +T   V                         I  +P  VV
Sbjct: 478 KELREVSDRLGTPRRTLLLASTGSPVGAGADDAALAALPSVSRSGKGLDLQIPDDPCVVV 537

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           +S+ G +  ++              D  +  L +    ++ +++ DG A+ +   +L + 
Sbjct: 538 LSSSGALARVEGGDPLEPGPR-AASDGWRAQLASSVRSQVAVVTQDGIAHRIDVVDLPAL 596

Query: 584 RGHGE------AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
                      A+   + L+ +   V     D T  + + +++G    +    +    R+
Sbjct: 597 PRFDTGLSLAAAMPSELLLHTDSVPVGLLDPDGTDVVAMGTARGTVKRLRPDVLA---RE 653

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
               + +   +++    + + D  +  +  + +LL     ++    R   G+       G
Sbjct: 654 EWEVIALEDGDRLVGFDRCSDDADLVFISSDAQLLRTPAAKVRPQGRTAGGMAGMKLNAG 713

Query: 696 GISDVICFKICE----------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +                    L  +   G++  +           RGG G    +   
Sbjct: 714 AEALGFWVVEAPIDAVVVTVAAALGALPGTGQTTVKVTPLECYPAKGRGGQGVRCQRFLR 773

Query: 746 RSGKF 750
              + 
Sbjct: 774 GEDRL 778


>gi|222110144|ref|YP_002552408.1| DNA topoisomerase iv subunit a [Acidovorax ebreus TPSY]
 gi|221729588|gb|ACM32408.1| DNA topoisomerase IV, A subunit [Acidovorax ebreus TPSY]
          Length = 784

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 274/781 (35%), Positives = 416/781 (53%), Gaps = 60/781 (7%)

Query: 6   ISNSNTL----VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +S+  TL      ++  ++ L    +  YL YALS +K RA+PD+ DG KPV RRI++AM
Sbjct: 1   MSDQPTLDFSAPADHGDSLELAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAM 60

Query: 62  SEMGLDFGAA-------FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
             MGL +            KSAR+VG+V+G+ HPHGDQS YD+LVRLAQ F QRYPLI G
Sbjct: 61  DRMGLGYSGPNRNVAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFNQRYPLIDG 120

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           QGNFG+ DGD AAA RYTEAR+T++A L+L  +D   VDF   Y+    EP   P++ P 
Sbjct: 121 QGNFGSRDGDGAAAMRYTEARLTRIAGLLLDEIDMGTVDFVPNYDGSTQEPRQLPARLPF 180

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
            L NG SGIAVG+AT IPSHN++E+ +A +AL+  P++S E+L   + GPD+P GG I+ 
Sbjct: 181 ALLNGASGIAVGLATEIPSHNLREVADACVALVKKPQLSDEELFALVPGPDYPGGGQIIS 240

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
           +   I ++YR GRG  +VRARW +E++ RG W +VVTE+P  V   +++E+I EL   K 
Sbjct: 241 TDADIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKV 300

Query: 295 IPL------------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
                                L+ +RDES     VR+V+ PK   +    L+ ++   + 
Sbjct: 301 KTGKKALTQEQTQLKAALLALLDGVRDESSKDAPVRLVIEPKTGKVPQQDLITALLAHTS 360

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           +ET  P+N+ ++ +   P    L  +L+EW+  R+  + RRS  R+  +  R+ IL+G  
Sbjct: 361 LETSAPINLTMVGLDGRPVQKSLREMLQEWIDFRQTTITRRSQHRLDKVLDRIHILEGRQ 420

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
           +  LNIDE+IAIIR  D+PK  +++RF L++ Q + IL +RLR L +LE  +I+ EL  L
Sbjct: 421 LVLLNIDEVIAIIRQADEPKAALIARFHLSDRQAEDILEIRLRQLARLEAIKIEQELKEL 480

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
             E+ K++ +L +       +A EI    ++F  +     RRT      +A+K  + +  
Sbjct: 481 RDEQGKLEDILANPASLRRLMAKEIEADAKLFGDA-----RRTLI----QAEKKAVAEVK 531

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
           +  EP+TVV+S +GW+R+ + H  +  +  FK GD L       T D +++  ++G+ Y+
Sbjct: 532 VLDEPVTVVVSEKGWVRARQGHGHEAGSFAFKSGDGLYGTFECRTVDTLIVFGSNGRVYS 591

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +   +L  GRG G+ I  LI+L      V  F   +   LL+  S G  F+     + A 
Sbjct: 592 VAVSSLPGGRGDGQPITTLIELEAGTQPVHYFAGPANAALLLAGSGGYGFLSTVEHMTAR 651

Query: 635 TRKGKTFLKVSSEEKMKL---VVKVTGD-------HVAVVGENRKLLIFSIDQIPEMSR- 683
            R GK F+ +   E++         +G        HV       ++L F I ++  M + 
Sbjct: 652 NRGGKAFVNLGEGERLCRPSHAAFTSGSQPLAPATHVCCASVGGRVLTFEIAELKLMEKG 711

Query: 684 GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVG 737
           G+G+ L        ++    +            GR     E  L           RG  G
Sbjct: 712 GRGLMLIDLEPKDQLAGAAAYTRS---VRFVGVGRGGKPREEQLEIRSLNNARAARGRKG 768

Query: 738 S 738
            
Sbjct: 769 K 769


>gi|121607398|ref|YP_995205.1| DNA topoisomerase IV subunit A [Verminephrobacter eiseniae EF01-2]
 gi|121552038|gb|ABM56187.1| DNA topoisomerase IV subunit A [Verminephrobacter eiseniae EF01-2]
          Length = 785

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 273/783 (34%), Positives = 407/783 (51%), Gaps = 54/783 (6%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +IS+ +T   +  + + L    +  YL YALS +K RA+PD+ DG KPV RRI++A
Sbjct: 1   MSDPSISDFSTAGNDEGETLGLADYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYA 60

Query: 61  MSEMGLDFGA-------AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           M  MGL +G           KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPLI 
Sbjct: 61  MGRMGLGYGGAAGNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFAQRYPLID 120

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG+ DGDSAAA RYTEAR++++A L+L  +DE  VDF   Y+    EP   P++ P
Sbjct: 121 GQGNFGSRDGDSAAAMRYTEARLSRIARLLLDEIDEGTVDFMPNYDGSTEEPRQLPARLP 180

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
             L NG SGIAVG+AT IPSHN+ EI  A +ALI  P ++ E+LL  + GPD+P GG I+
Sbjct: 181 FALLNGASGIAVGLATEIPSHNLGEIAAACIALIKTPALTQEELLALVPGPDYPGGGQII 240

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
            S   I  +Y+ GRG  ++R+RW +EE+ RG W +VV E+P  V   R++E+I EL   K
Sbjct: 241 SSAAEIAGAYQTGRGSLKLRSRWKIEELARGQWQLVVNELPPGVSTQRVLEEIEELTNPK 300

Query: 294 RIPLLEDIRDE--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
                + +  E                        VR+V  PK        L+ ++   +
Sbjct: 301 IKVGKKALSQEQTQLKASLLAVLDLVRDESGKDAPVRLVFEPKTGKTPQQELITALLAHT 360

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +ET  P+N+ ++ +   P    L  +L+EW+A R+  + RRS   +  +  R+ IL+G 
Sbjct: 361 SLETSAPINLTLVGLDGRPVQKSLRQMLQEWIAFRQTTITRRSQHHLNKVLERIHILEGR 420

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
            I  L++DE+IAIIR  D+PK  +++R+SL++ Q + IL +RLR L +LE  +I  EL  
Sbjct: 421 QIVLLHLDEVIAIIRQADEPKAALMARWSLSDRQAEDILEIRLRQLARLEALRIGQELKE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L   + K++ +LN        +  EI    + F+       RRT      +A+K  + + 
Sbjct: 481 LRDRQGKLEDILNHPGALRRTLIKEIETDAKTFADP-----RRTLI----QAEKKAVIEV 531

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +  EP+TVV+S +GW+R    H  + ++  FK GD L       T D +L    +G+ Y
Sbjct: 532 RVPDEPVTVVVSQKGWVRVRSGHGHEAASFAFKAGDGLYGTFECRTVDTLLAFGNNGRVY 591

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
           ++    L   RG G+ +  LI+L     ++  F   +   LL+ +S G  F+     +I+
Sbjct: 592 SVAVSLLPGARGDGQPVTTLIELEAGTQVLHYFAGPAQATLLLSNSGGYGFLATVEHMIS 651

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGD----------HVAVVGENRKLLIFSIDQIPEMSR 683
             + GKTFL ++  E         G           HVA      ++L F + ++  M+ 
Sbjct: 652 RQKGGKTFLTLAGGETPCPPSHAFGSTGSAPVLPATHVACASTGGRILTFELGELKTMAN 711

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVG 737
            G+G+ L   +D          +      ID  GR     E  L           RG  G
Sbjct: 712 GGRGLLLIDLEDKDRLAGAAAYVR--SVRIDGLGRGGKLREETLELRSLNNARAARGRKG 769

Query: 738 SLV 740
              
Sbjct: 770 KAT 772


>gi|121593434|ref|YP_985330.1| DNA topoisomerase IV subunit A [Acidovorax sp. JS42]
 gi|120605514|gb|ABM41254.1| DNA topoisomerase IV subunit A [Acidovorax sp. JS42]
          Length = 784

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 273/781 (34%), Positives = 415/781 (53%), Gaps = 60/781 (7%)

Query: 6   ISNSNTL----VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +S+  TL      ++  ++ L    +  YL YALS +K RA+PD+ DG KPV RRI++AM
Sbjct: 1   MSDQPTLDFSAPADHGDSLELAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAM 60

Query: 62  SEMGLDFGAA-------FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
             MGL +            KSAR+VG+V+G+ HPHGDQS YD+LVRLAQ F QRYPLI G
Sbjct: 61  DRMGLGYSGPNRNVAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFNQRYPLIDG 120

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           QGNFG+ DGD AAA RYTEAR+T++A L+L  +D   VDF   Y+    EP   P++ P 
Sbjct: 121 QGNFGSRDGDGAAAMRYTEARLTRIAGLLLDEIDMGTVDFVPNYDGSTQEPRQLPARLPF 180

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
            L NG SGIAVG+AT IPSHN++E+ +A +AL+  P++S E+L   + GPD+P GG I+ 
Sbjct: 181 ALLNGASGIAVGLATEIPSHNLREVADACVALVKKPQLSDEELFALVPGPDYPGGGQIIS 240

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
           +   I ++YR GRG  +VRARW +E++ RG W +VVTE+P  V   +++E+I EL   K 
Sbjct: 241 TDADIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKV 300

Query: 295 IPL------------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
                                L+ +RDES     VR+V+ PK   +    L+ ++   + 
Sbjct: 301 KTGKKALTQEQTQLKAALLALLDGVRDESSKDAPVRLVIEPKTGKVPQQDLITALLAHTS 360

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           +ET  P+N+ ++ +   P    L  +L+EW+  R+  + RRS  R+  +  R+ IL+G  
Sbjct: 361 LETSAPINLTMVGLDGRPVQKSLREMLQEWIDFRQTTITRRSQHRLDKVLDRIHILEGRQ 420

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
           +  LNIDE+IAIIR  D+PK  +++RF L++ Q + IL +RLR L +LE  +I+ EL  L
Sbjct: 421 LVLLNIDEVIAIIRQADEPKAALIARFHLSDRQAEDILEIRLRQLARLEAIKIEQELKEL 480

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
             E+ K++ +L +       +  EI    ++F  +     RRT      +A+K  + +  
Sbjct: 481 RDEQGKLEDILANPASLRRLMVKEIEADAKLFGDA-----RRTLI----QAEKKAVAEVK 531

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
           +  EP+TVV+S +GW+R+ + H  +  +  FK GD L       T D +++  ++G+ Y+
Sbjct: 532 VLDEPVTVVVSEKGWVRARQGHGHEAGSFAFKSGDGLYGTFECRTVDTLIVFGSNGRVYS 591

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +   +L  GRG G+ I  LI+L      V  F   +   LL+  S G  F+     + A 
Sbjct: 592 VAVSSLPGGRGDGQPITTLIELEAGTQPVHYFAGPANAALLLAGSGGYGFLSTVEHMTAR 651

Query: 635 TRKGKTFLKVSSEEKMKL---VVKVTGD-------HVAVVGENRKLLIFSIDQIPEMSR- 683
            R GK F+ +   E++         +G        HV       ++L F I ++  M + 
Sbjct: 652 NRGGKAFVNLGEGERLCRPSHAAFTSGSQPLAPATHVCCASVGGRVLTFEIAELKLMEKG 711

Query: 684 GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVG 737
           G+G+ L        ++    +            GR     E  L           RG  G
Sbjct: 712 GRGLMLIDLEPKDQLAGAAAYTRS---VRFVGVGRGGKPREEQLEIRSLNNARAARGRKG 768

Query: 738 S 738
            
Sbjct: 769 K 769


>gi|255087957|ref|XP_002505901.1| predicted protein [Micromonas sp. RCC299]
 gi|226521172|gb|ACO67159.1| predicted protein [Micromonas sp. RCC299]
          Length = 963

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/797 (30%), Positives = 384/797 (48%), Gaps = 64/797 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + L     + YL+YA+S I  RA+PD+RDG KPVHRRI++AM E+GLD    FK
Sbjct: 106 DERIVDLELHLEASQSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFK 165

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGDQSVYD+LVR+AQ F     L+ G GNFG++D D  AA RYTE
Sbjct: 166 KCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSSALVDGHGNFGSLDADPPAAMRYTE 225

Query: 134 ARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+   AE + L  +  DAVDF +T++   +EP V P++ PNLL NG++GIAVGMATSIP
Sbjct: 226 CRLKPAAEAMLLADIGLDAVDFTETFDGSQTEPAVLPARLPNLLINGSTGIAVGMATSIP 285

Query: 193 SHNVQEICEAALALIDNPEIS-IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            HN++E+  A +    +PE   +E LLE +  PDFPTGGIIV+ R    E YR G+GG  
Sbjct: 286 PHNLREVANALVRFASDPERCTLEDLLEVMPAPDFPTGGIIVQQRGGFKEMYRTGKGGVN 345

Query: 252 VRARWCVEEVGRG------SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           +R    VE+V  G         +V+T IPYQ  K+ L E+IA+L+ ++ I  + D+RDES
Sbjct: 346 LRGAATVEKVSGGGRNGQARDAVVITSIPYQTNKASLCEQIADLVNSRTIEGVSDVRDES 405

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R  D + +++ ++  + ++TR  +N+  L  GR P+V+ L  I++E+L
Sbjct: 406 DRDGMRVVVEIRRGADANFVLDQLYARTKLQTRVSVNLVGLV-GREPKVLSLMEIMREFL 464

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----MVSRF 421
           A R + + RR+   +Q    R+ +++G L      D ++A IR                F
Sbjct: 465 AFRCDAVERRARHELQKASGRLHVVEGYLAVQAAPDAVVAAIRAAKDGPTAQAALQEKPF 524

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q +A+L + LR L  LE  ++K+E   L A  E +  LL    +    +A E +E
Sbjct: 525 WLSEKQAEAVLAMPLRRLTGLEHDKLKTEEAELTARVEDLTGLLGDRSRVIATVAREAKE 584

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           +++ F     + RR     +     K       +   P  V+++NRG+I+          
Sbjct: 585 LRDTFG----VDRRTDIDTDAQIHAKKMNVTLDMLNSPSLVIMTNRGYIKRIDPAVFSKQ 640

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQ 591
              +   +    + GD +    H +  D +L  +  G+ + + A N+        G    
Sbjct: 641 NRATRGRNMGKMRGGDEVTKVTHCNGLDTVLFFTDRGRVHAVRAFNIPQASTSALGTPFT 700

Query: 592 LLIDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
            ++ L   + I      D            L  V+++G       SE +     GK  L 
Sbjct: 701 RVLKLAEGESITAMLPVDTTEEPGEEGETSLCFVTARGLIKRTCASEFVGIRNNGKKALV 760

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRK-LLIFSIDQIPEMSR-GKGVRLQSYKDGGI---- 697
           +   +++K V  V      ++G     ++ F  D +    R   GV+  ++K  G+    
Sbjct: 761 LRKGDRLKHVDIVKKGDGIIIGGIDGSVIHFDADSVRAQGRAAAGVKAMAFKPDGLDDTS 820

Query: 698 ----------------------SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
                                  +    +  +G      +     +  +        R G
Sbjct: 821 EDDDTSEALPANASAGDVEDDSEEDGEDEDAKGPMLFFVSSDGRGKRISVAQFAQQSRAG 880

Query: 736 VGSLVPKGFPRSGKFLS 752
            G     G  +  K  +
Sbjct: 881 RGKKGM-GLMKGSKLAA 896



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV-----TGDHVAVVGE 666
           L  VSS G    +  ++    +R  +GK  + +    K+  +          +HV +  +
Sbjct: 856 LFFVSSDGRGKRISVAQFAQQSRAGRGKKGMGLMKGSKLAALCLTGLDSDEHEHVIIGSQ 915

Query: 667 NRKLLIFSIDQIPEM-SR-GKGVRLQSYKDGGISDVICFKICE 707
              +  + +  I     R  KGV +    DG     I     E
Sbjct: 916 GGVMNRYDVASIRPQSGRAAKGVNVMKLSDGDTVRDITLLPAE 958



 Score = 47.5 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 5/90 (5%)

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC---FKICEGLTWIDSAG 716
           +  V  + +    S+ Q  + SR G+G +      G     +C       E    I  + 
Sbjct: 856 LFFVSSDGRGKRISVAQFAQQSRAGRGKKGMGLMKGSKLAALCLTGLDSDEHEHVIIGSQ 915

Query: 717 RSYNRSENDLLGWLGK-RGGVGSLVPKGFP 745
                  +         R   G  V K   
Sbjct: 916 GGVMNRYDVASIRPQSGRAAKGVNVMKLSD 945


>gi|170017458|ref|YP_001728377.1| DNA topoisomerase IV, A subunit [Leuconostoc citreum KM20]
 gi|169804315|gb|ACA82933.1| DNA topoisomerase IV, A subunit [Leuconostoc citreum KM20]
          Length = 812

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 208/752 (27%), Positives = 360/752 (47%), Gaps = 28/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   +
Sbjct: 1   MADRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDHPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G+ID D AAA RYT
Sbjct: 61  RKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQNWKVREPLIDMNGNNGSIDNDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A  ++  + +D VD    +++   EP V PS+ P+LL NG +GI+ G AT IP
Sbjct: 121 EARLSKIAGEMMADLGQDTVDMVLNFDDTTYEPTVLPSRIPSLLINGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EI  A + L+D+PE     L+ YI GPDFPTGG I++  + I ++Y+ GRG   V
Sbjct: 181 PHNLKEINAALIYLLDHPEAPQSALMRYIKGPDFPTGG-IIQGLDGIKKAYKTGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I +TE+PY+V KS L+ KI  + + K +  + ++RDES  +   +
Sbjct: 240 RAKTAISELKGGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVAGISEVRDESDREGMSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +   N+  + + ++  +F  +D++  +     V    + P  + L   L+ ++A R+EV+
Sbjct: 300 VIELNKDTNANGILTYLFKKTDLQIAYNF-NMVAIHDQRPVHVSLKQALEAFIAFRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            +RS++ +     R  I++GL+     +DE++A IR     K    +   RF  T+ Q +
Sbjct: 359 LKRSAYELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLIARFDFTQPQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  Q++ E   L  +   +  ++N        I  EI  + + +  +
Sbjct: 419 AIVTLQLYRLTNTDVTQLEEEFAALTEKINHLTEVMNEEMALKAVIRDEITAITQKYQSA 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                 R +  E    D    +   I +E + V++S  G+ +     S   S       D
Sbjct: 479 ------RRSQIEAEVEDLVIDKAVTIAEEDVQVLVSRNGYYKRASIRSYKASDKDNGLAD 532

Query: 550 S--LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ------LLIDLNHNQD 601
                     +TT  + + +  G     P   L   R                   +   
Sbjct: 533 DDLPVFEGQLNTTQHLFMFTNKGSVIYRPVHELPDSRWKDTGEHFSQELSNWRTEEYVIK 592

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLVV----K 655
           +V     +      +V++ G       S+++  A  +K    +K+ +++   +       
Sbjct: 593 VVPINTLEQGGAFTIVTNDGFIKQTTLSDMLPKAYKKKTSMAIKLKTDDSYVVNADYFET 652

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           V    V ++ ++   L F++  IPE+  R  GV+    ++        F   E       
Sbjct: 653 VGQQDVLLLSQHGVGLRFAVKSIPEIGARTAGVKAMDLRNEDTIKAAVFVTNEAQRVAIM 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           A     +          KR   G L+     +
Sbjct: 713 ADNGAFKYMPVSEITRSKRANKGLLIF--TQK 742


>gi|297539209|ref|YP_003674978.1| DNA topoisomerase IV subunit A [Methylotenera sp. 301]
 gi|297258556|gb|ADI30401.1| DNA topoisomerase IV, A subunit [Methylotenera sp. 301]
          Length = 761

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 269/753 (35%), Positives = 414/753 (54%), Gaps = 30/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  S         AV +    EE YLAYA+S +K RA+P + DG KPV RRI+ AM EMG
Sbjct: 1   MDTSMLENNNEENAVPIGEYAEEAYLAYAVSVVKGRALPSVEDGQKPVQRRILFAMKEMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  G    KSAR+VG V+G  HPHGD S Y++ VRLAQ F  RYPLI GQGNFG+ DGD 
Sbjct: 61  LIAGVKPVKSARVVGNVLGMYHPHGDSSAYEAAVRLAQDFTLRYPLIDGQGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++ +A+L+L  +D   VDF+  Y+    EPV+ P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEMRLSPIADLLLSEIDRGTVDFQSNYDGAFQEPVLLPARLPMMLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT +  HN++EI  A L ++DNP+ +    ++Y+ GPDFP GG ++     I+ +Y  
Sbjct: 181 GMATEMIPHNMREIANAVLHVMDNPDATTADFMQYVPGPDFPGGGQLITQTADILSTYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS------------------RLIEKIA 287
           GRG  R+RARW VE + RG W I++ E+P+ V                     + I++  
Sbjct: 241 GRGSLRLRARWIVEPMARGQWRIIIHELPHGVSVETIQDEILAISNPKPKKDKKTIDQDQ 300

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
            L+    + +++ ++ E  +DVR+++ PK   +  D LM  + + + ME   P+NM ++ 
Sbjct: 301 LLVKQSALSMIDTVKSEGKKDVRLIIEPKTSKVSSDELMAFLLLHTSMEVSCPVNMVMIG 360

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
               P    +  ILKEW+A R  V+ RR  F +  I++R+ IL+G +IA+L+IDE+I +I
Sbjct: 361 TDGRPAQKGMIAILKEWIAFRLNVVRRRCQFDLDKINKRIHILEGRMIAFLHIDEVIRVI 420

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           RN D+PK  +++ F L+E Q + IL +RLR L +LE ++I+ EL +L  E + + ++L S
Sbjct: 421 RNSDEPKTDLIAAFQLSEIQAEDILEIRLRQLARLEGFKIEKELKDLREEADGLQNILGS 480

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +     A EI++  E +        RRT    V R      Q+A +  EP+T++IS  
Sbjct: 481 DNKLRKLTAKEIKQDAEKYGD-----NRRTLIEPVERVQGG--QKAFVVDEPVTILISKN 533

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           GWIR+ + H V+  ++ +K GD     +   T   I+LL T+G+ Y   A  +  G+G G
Sbjct: 534 GWIRARQGHGVERESIVWKSGDGEFAVIETRTVLPIVLLDTNGRCYAFDASTVPGGKGDG 593

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             +  +I++ +   +  A       + L  +S    F+     ++A  + GK F+K    
Sbjct: 594 IPLSSIIEVQNGAKLAHALSGKDDDRYLFATSNSYGFVAPLKGLVARPKAGKAFMKPEDG 653

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKI 705
             +   +K+    HVAV     K L+F I ++ E  + GKGVR+    D   + +   ++
Sbjct: 654 ALILPPIKLDERTHVAVTSSENKFLVFPISEVNEYPNGGKGVRMMDIPDK--ASLSRIEL 711

Query: 706 CEGLTW-IDSAGRSYNRSENDLLGWLGKRGGVG 737
            +GL+  +   G+        L  +L KR   G
Sbjct: 712 SDGLSANVIIRGKVKVLEGEALSKFLLKRARKG 744


>gi|259046725|ref|ZP_05737126.1| DNA topoisomerase IV, A subunit [Granulicatella adiacens ATCC
           49175]
 gi|259036621|gb|EEW37876.1| DNA topoisomerase IV, A subunit [Granulicatella adiacens ATCC
           49175]
          Length = 822

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 210/762 (27%), Positives = 401/762 (52%), Gaps = 33/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ ++L   + +R+  Y+   I++RA+PD+RDG KPV RRI++AMS  G      F+K
Sbjct: 5   QDIQELNLEDVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMSIDGNTSDKQFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD AAA RYTEA
Sbjct: 65  SAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRDVLIEMHGNNGSMDGDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++E +L+ +D+  V+F   +++ + EP V P+++PNLL NG +GI+ G AT IP+H
Sbjct: 125 RLSKISEELLKDLDKKTVEFVLNFDDTEEEPTVLPARYPNLLVNGATGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A +  ID+P+ ++++L++++ GPDFPTGG I++  E + ++Y  GRG   +R+
Sbjct: 185 NLGEVIDATIHAIDHPKATVKELMQFVKGPDFPTGG-IIQGLEELEQAYETGRGKVVIRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   I+++EIPY+V K+ L++KI E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEPIKGGKSQIIISEIPYEVNKALLVKKIDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + + ++  +   +D++  +  NM  +   R P  + L  IL  ++  ++EV+ R
Sbjct: 304 ELKKEANAEGILNYLLKNTDLQVNYNFNMVAID-ERRPVQVGLKTILTSYINFQKEVITR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ + ++    R+ I+ GL+ A   +DE+IA+IRN       K  +V  +  T  Q +AI
Sbjct: 363 RTQYDLKKAQDRLHIVDGLMKALSILDEVIALIRNSKDKKHAKERLVETYDFTMIQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +NL+L  L   +   +++E  +L  +     S+L S K     +  E+R++K+ ++    
Sbjct: 423 VNLQLYRLTNTDITILQNEKLDLNEQIATFLSILKSEKTLLQVMKSELRDLKKKYATP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  +    +     + ++ +E + VV + +G+ + +   S           +EG
Sbjct: 481 ----RLTQIQAEIEEIKIETEVLVTEEEVYVVATKQGYYKRVSPRSFASSAPEENGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
           D + +   A T D ++L ++ G    LP   +     +  G  +   I L  N+ I+T F
Sbjct: 537 DEVVLCQKASTLDNLILFTSKGNYLHLPVHEIPEAKWKDVGNHLSQSISLGSNEVILTGF 596

Query: 607 VYDSTCK-------LLVVSSKGNAFIVEESEIIANT---RKGKTFLKVS-SEEKMKLVVK 655
           V             ++  + +G       +E         +    +K+  + +++  VV 
Sbjct: 597 VKAKDSDDSYKDWTVVFFTKEGLVKQTLFNEFTTYRGYKTRTSNAMKLKTTTDEVVKVVV 656

Query: 656 VTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEG-LT 710
              +   V +V      L + + +IP +     GV+  +  K+  ++  + + +    ++
Sbjct: 657 TNPESLEVFIVTHCGFGLRYELSEIPVVGTVASGVKAINLRKEDFVAGAMVYSLEHKVVS 716

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFL 751
              +  R   +  N L   +  R   G +V +    +  + +
Sbjct: 717 AFLTTQRGAVKRFNVLEISMLTRAKRGLMVLRELKTKPHRVV 758


>gi|315038434|ref|YP_004032002.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1112]
 gi|325956845|ref|YP_004292257.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus 30SC]
 gi|312276567|gb|ADQ59207.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1112]
 gi|325333410|gb|ADZ07318.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus 30SC]
          Length = 818

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 213/755 (28%), Positives = 382/755 (50%), Gaps = 30/755 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+D V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ ++E L++Y+ GPDFPTG  I+   + I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDATLEDLMKYVKGPDFPTGA-IIMGTKGIKEAYKTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++++      IV TEIP+ V KS L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQDIRGHRQEIVATEIPFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDTDAQNILNYLFKNTDLQVSYNFNMVAIDHM-TPVQVGLKHILISYLEHEVDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR        K  +++++  TE Q +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTEKQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E D L    EK   LL+  K    +I  E+  VK+ FS  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFSNP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T      A     ++A++  E + V+IS  G+++     S    D +     
Sbjct: 481 ------RRTQISQESAKVEIDEKALVTDEQVRVLISRDGYLKRSSIRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P         +  G+ +   I L++++ I+ 
Sbjct: 535 DGDKVVYENTISTLSNLYLFTNRGNVIYRPVHELVEAKWKETGQHLSQEIGLDNDEKIIR 594

Query: 605 AFVYD---STCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMK----LVV 654
            FV D   +    L+ ++ G    +E + +        +  T +K+ +++ +      V 
Sbjct: 595 VFVLDKLSANINFLLATNDGYIKQLELANLQPTRTYKSRAMTAIKLKNKDSLLVGVDAVK 654

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + + I +IP    +  GV+  + K+            + +  + 
Sbjct: 655 PDAKKEITLFTHRAYAIRYDISEIPTSGSKAVGVKSANLKEDDYIVNYVLVDNKYVDLMH 714

Query: 714 S---AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 R   +     L     R   G LV +   
Sbjct: 715 VGLITQRGAFKQFKLKLVNKVSRAKRGVLVLRELK 749


>gi|327183631|gb|AEA32078.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1118]
          Length = 818

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 213/755 (28%), Positives = 381/755 (50%), Gaps = 30/755 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+D V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P  ++E L++Y+ GPDFPTG  I+   + I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPNATLEDLMKYVKGPDFPTGA-IIMGTKGIKEAYKTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++++      IV TEIP+ V KS L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQDIRGHRQEIVATEIPFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDTDAQNILNYLFKNTDLQVSYNFNMVAIDHM-TPVQVGLKHILISYLEHEVDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR        K  +++++  TE Q +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTEKQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E D L    EK   LL+  K    +I  E+  VK+ FS  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFSNP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T      A     ++A++  E + V+IS  G+++     S    D +     
Sbjct: 481 ------RRTQISQESAKVEIDEKALVTDEQVRVLISRDGYLKRSSIRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P         +  G+ +   I L++++ I+ 
Sbjct: 535 DGDKVVYENTISTLSNLYLFTNRGNVIYRPVHELVEAKWKETGQHLSQEIGLDNDEKIIR 594

Query: 605 AFVYD---STCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMK----LVV 654
            FV D   +    L+ ++ G    +E + +        +  T +K+ +++ +      V 
Sbjct: 595 VFVLDKLSANINFLLATNDGYIKQLELANLQPTRTYKSRAMTAIKLKNKDSLLVGVDAVK 654

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + + I +IP    +  GV+  + K+            + +  + 
Sbjct: 655 PDAKKEITLFTHRAYAIRYDISEIPTSGSKAVGVKSANLKEDDYIVNYVLVDNKYVDLMH 714

Query: 714 S---AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 R   +     L     R   G LV +   
Sbjct: 715 VGLITQRGAFKQFKLKLVNKVSRAKRGVLVLRELK 749


>gi|289706923|ref|ZP_06503260.1| DNA gyrase/topoisomerase IV, A subunit [Micrococcus luteus SK58]
 gi|289556358|gb|EFD49712.1| DNA gyrase/topoisomerase IV, A subunit [Micrococcus luteus SK58]
          Length = 868

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 220/791 (27%), Positives = 358/791 (45%), Gaps = 70/791 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ MS MGL    
Sbjct: 20  PLEQENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSRMGLRPDR 79

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VGEV+GKLHPHGD ++YD++VRLAQPF  R P++ G GNFG++D D  AA R
Sbjct: 80  GHVKSARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLD-DGPAAPR 138

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM   A  +   +DE  VDF   Y+ +  +P V P+ +PNLL NGT+GIAVGMAT+
Sbjct: 139 YTEARMAPAALALTADLDEGTVDFIPNYDNQLQQPAVLPAAYPNLLVNGTTGIAVGMATN 198

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +  HN++E+   A  L+ +P   +E ++ +I GPD P+GG IV   + + ++Y  GRG F
Sbjct: 199 MAPHNLREVVAGARHLLADPAADLEAIMAHIPGPDLPSGGRIV-GLDGVRDAYATGRGTF 257

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DV 309
           R+RA   VE+V      +VVTE+PY V   ++IE+I   + AK++  + D+ D +   + 
Sbjct: 258 RMRAAVAVEQVTARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNG 317

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +        +P  ++ +++  + +E  F +N   L     PQ + L  +L+ ++ HR 
Sbjct: 318 LRLQIELKSGFNPQAVLAALYRHTPLEETFGINNVALVD-GQPQTLGLLPLLRVYVDHRL 376

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           +V+ RR+  R+     R+ +++GLL+A ++IDE+I IIR+ D     +  ++  F LT+ 
Sbjct: 377 DVVRRRTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLMGVFDLTQV 436

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q D IL LRLR L K    ++++E D L A   +++++L S  +    ++ E++ V +  
Sbjct: 437 QADHILELRLRQLTKFSRIELEAERDELQAAIAELEAILASDARLREVVSSELQAVADEH 496

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQ----------------QAMIEKEPITVVISNRGWI 530
                   RRT   E   A                        M+       ++S  G +
Sbjct: 497 GD-----DRRTVLLEAETAAAPAAGPAPSGPTPAGAGQAGADLMVPDTACWALLSTSGRL 551

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------S 582
                 +        ++ D+    +       I  L++ G  + L A +L          
Sbjct: 552 LRTADRTPIAPQGRRRKHDAFASVVPTTARGEIGALTSAGALHRLQAVDLPVAGEPSAAP 611

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV--SSKGNAFIVEESEIIANTRKGKT 640
                     L+ L   + +V     D+    ++   ++ G    V         R+   
Sbjct: 612 AMTAALPAAELVPLAKGETLVALVPLDT----VMALGTAHGVVKRVRPE--WPLNRQVVD 665

Query: 641 FLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            + +   + +          D +  +    +LL ++   +      G GV       G  
Sbjct: 666 AVALKDGDAVVGAAPAPDEADQLVFLTRTGQLLRYAASAVRPQGPAGGGVAGIRLAAGDT 725

Query: 698 SDVICFKICEGLT--------------WIDSAGR---------SYNRSENDLLGWLGKRG 734
                      LT               +                 +           RG
Sbjct: 726 VLAFGVAPAASLTETGADAAAHPRPAVVVTVTDGEADVLGSAPGSVKVTPLGEYPAKGRG 785

Query: 735 GVGSLVPKGFP 745
             G    +   
Sbjct: 786 TGGVRAHRLLK 796


>gi|241764345|ref|ZP_04762373.1| DNA topoisomerase IV, A subunit [Acidovorax delafieldii 2AN]
 gi|241366301|gb|EER60844.1| DNA topoisomerase IV, A subunit [Acidovorax delafieldii 2AN]
          Length = 784

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 273/781 (34%), Positives = 417/781 (53%), Gaps = 60/781 (7%)

Query: 6   ISNSNTLV----EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +S+  TL      +   A+ L    +  YL YALS +K RA+PD+ DG KPV RRI++AM
Sbjct: 1   MSDQPTLDFTTAGDAGDALDLAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAM 60

Query: 62  SEMGLDFGAAFK-------KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
             MGL +    +       KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPLI G
Sbjct: 61  DRMGLGYSGPTRSTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFAQRYPLIDG 120

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           QGNFG+ DGD AAA RYTEAR++++  L+L  +DE  VDF   Y+    EP   P++ P 
Sbjct: 121 QGNFGSRDGDGAAAMRYTEARLSRITSLLLDEIDEGTVDFMPNYDGSTEEPRQLPARLPF 180

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
            L NG SGIAVG+AT IPSHN++EI +A +ALI  P +S + LL  + GPD+P GG I+ 
Sbjct: 181 ALLNGASGIAVGLATEIPSHNLREIADACIALIKTPSLSQDDLLALVPGPDYPGGGQIIS 240

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
           S   I ++YR GRG  +VRARW +E++ RG W +VV E+P  V   R++E+I E+   K 
Sbjct: 241 SAGDIADAYRTGRGSLKVRARWKIEDLARGQWQLVVNELPPGVSTQRVLEEIEEITNPKV 300

Query: 295 IPL------------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
                                L+ +RDES     VR+V  PK        L+ ++   + 
Sbjct: 301 KAGKKALSQDQTQLKASMLAVLDVVRDESSKDAPVRLVFEPKTGKTPQQELITALLAHTS 360

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           +ET  P+N+ ++ +   P    L  +L+EW+A R+  + RRS  R+  +  R+ IL+G  
Sbjct: 361 LETSAPINLTMVGLDGKPVQKSLRLMLEEWIAFRQTTITRRSQHRLAKVLDRIHILEGRQ 420

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
              LNIDE+IAIIR  ++PK  +++RF+L++ Q + IL +RLR L +LE  +I+ EL  L
Sbjct: 421 TVLLNIDEVIAIIRAAEEPKAALIARFNLSDRQAEDILEIRLRQLARLEAIKIEQELKEL 480

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
              + K++ +LN+       +  EI    + F+ +     RRT      +A+K  + +  
Sbjct: 481 RESQGKLEDILNNPGSLRRTMVKEIEADAKTFADA-----RRTLI----QAEKKAVAEVK 531

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
           +  EP+TV++S +GW+R+   H  + ++  FK GD L       T D+++   ++G+ Y+
Sbjct: 532 VVDEPVTVIVSQKGWVRARTGHGHEAASFAFKAGDGLYATFECRTVDQLIGFGSNGRVYS 591

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +P   L  GRG G+ +  LI+L     ++  F   ++  LL+ +S G  F+     +++ 
Sbjct: 592 VPVAQLPGGRGDGQPVTTLIELESGTQLLHYFAGPASATLLLSNSGGYGFLASVENLVSR 651

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD----------HVAVVGENRKLLIFSIDQIPEMSR- 683
            + GK FL +   E +       G           HVA      ++L F I ++  M+  
Sbjct: 652 QKGGKAFLTLGEGETVCPPSHAAGSTGAQPLPPATHVACASAGGRILTFEISELKTMANG 711

Query: 684 GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVG 737
           G+G+ L        ++    +        I+  GR     E  L           RG  G
Sbjct: 712 GRGLMLIDLEPKDQLAGAAAYTRS---VRIEGIGRGGKAREETLEIRSLNNARTARGRKG 768

Query: 738 S 738
            
Sbjct: 769 K 769


>gi|262376577|ref|ZP_06069805.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145]
 gi|262308287|gb|EEY89422.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145]
          Length = 993

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 233/826 (28%), Positives = 389/826 (47%), Gaps = 105/826 (12%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM ++   +L  +++D V++ D Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMRKLTHELLADLEKDTVEWEDNYDGSERIPQVMPTRVPNLLINGVTGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  ++P+ISIE L+E+I GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYANDPQISIEGLMEHISGPDFPTGG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K++ IE+IAEL+  K++  + ++RDES +D  
Sbjct: 240 IRGKYHFEEDPKNGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F  + +E  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVIVNNLFQNTQLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ F ++    R  IL+GL +A  NID II  I++   P                 
Sbjct: 359 VVTRRTMFELRKARERGHILEGLTVALANIDAIIETIKSSANPAEARERLQAGEWAGGGV 418

Query: 420 -------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV+AI+ LRL  L  LE+ ++ 
Sbjct: 419 LALLEKAGSVSVRPDEIEGEDPSRPFGLDGEIYRLSPTQVNAIMELRLHRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L++  ++ ++LN      N I  E+  + + +  +     R+T+  E   +   
Sbjct: 479 AEYSEILSQIAELTAILNDFNLLMNVIREELALILQQYGDA-----RKTSIVE---SRID 530

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+ ++                SA   KE D ++  +   + 
Sbjct: 531 FSREDLIPEEQMVLTVSKSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSSH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTCKLL--- 615
             +L  +  GK Y L    +       +   +  L+ L+ N+ I          K     
Sbjct: 591 ATVLCFTNVGKVYRLKVYEVPQASRGAKGRPMVNLLPLDENETITAILPVIDAPKKFKER 650

Query: 616 VVSSKGNAF---------------IVEESEIIANTRKG------------------KTFL 642
           + + K                     E    +  +  G                   +  
Sbjct: 651 LAAFKAFVKANAAQLQANEVINAHFAELEAALTESEDGADDISDALRIQLKQLGLELSAT 710

Query: 643 KVSSE---EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
            +  +   +  +    V  + +V +  E   +    ++Q   + R  G+R          
Sbjct: 711 DLDDDIINDFAQQAEAVRKNFYVFMATEYGTIKRVELEQFSNV-RSNGLRAIELNGDDTL 769

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             +     E    + S          +       R   G    +  
Sbjct: 770 IGVAITDGEQQIMLFSNE-GKAIRFAETDVRSMGRSAKGVRGMRVT 814



 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 27/168 (16%)

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLL 671
            + + +  G    VE  +       G   ++++ ++ +  V    G+  + +     K +
Sbjct: 732 YVFMATEYGTIKRVELEQFSNVRSNGLRAIELNGDDTLIGVAITDGEQQIMLFSNEGKAI 791

Query: 672 IFSIDQIPEMSR-GKGVRLQS--------YKDGGISD-----------------VICFKI 705
            F+   +  M R  KGVR            ++   ++                 V    +
Sbjct: 792 RFAETDVRSMGRSAKGVRGMRVTIGAAAQLEENDETEIESDDEDGSDSALISRIVSLVVV 851

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            E    + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 852 PETGEVLCASENGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGQLVGA 899



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT 657
            IV+  V   T ++L  S  G        +     R GK  + + + E+   +   V + 
Sbjct: 844 RIVSLVVVPETGEVLCASENGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGQLVGAVAID 903

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDS 714
               + ++ +   L+     ++ +  R  +GVRL     +  +  V+  +  E   ++++
Sbjct: 904 ASKELMLISDGGTLVRTRASEVAQTGRNAQGVRLIRLGNEELLVGVVSIEAVEEDEFVEA 963


>gi|332670664|ref|YP_004453672.1| DNA topoisomerase [Cellulomonas fimi ATCC 484]
 gi|332339702|gb|AEE46285.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas fimi ATCC 484]
          Length = 824

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 223/774 (28%), Positives = 365/774 (47%), Gaps = 46/774 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               + E +  + +   +E  +L YA S I  RA+PD RDG KPV RRI+  M++MGL  
Sbjct: 11  PPEDLVEKIVDIDVASEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILFQMADMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD  +YD++VRLAQ F  R PL+ G GNFG++D D  AA
Sbjct: 71  DRPYVKSARVVGEVMGKLHPHGDAPIYDAMVRLAQSFALRLPLVDGHGNFGSLD-DGPAA 129

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +  G+DED VDF   Y+ + ++P V P+  PNLL NG +GIAVGMA
Sbjct: 130 PRYTEARLAPSATAMTTGLDEDVVDFVPNYDNKLTQPEVLPAAIPNLLVNGAAGIAVGMA 189

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++  HN+ E+  AA  L+ +PE ++++L+ ++ GPD PTGG IV   + + ++YR GRG
Sbjct: 190 TNMAPHNLVEVVAAARHLVLHPEATLDELMRFVPGPDLPTGGKIV-GLDGVRDAYRTGRG 248

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
            F+ RA   VE V      IV+TE+PY V   ++IEKI E + +K++  + D  D +  +
Sbjct: 249 AFKTRATAVVENVTPRRKGIVITELPYMVGPEKVIEKIKEGVQSKKLSGISDAVDLTDRQ 308

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++        P+ ++E ++  + +E  F +N   L     P+ + L  +L+ W+ H
Sbjct: 309 HGLRLVIEVKTGFHPEAVLEQLYRYTPLEDSFSINNVALVD-GQPRTLGLRELLQVWVDH 367

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R  V+ RRS  R+     R+ +++GLL+A L+IDE+I +IR  D     +  + + F L+
Sbjct: 368 RVAVVRRRSQHRLTKRQERLHLVEGLLVAILDIDEVIQVIRTSDDAESARTRLQTVFDLS 427

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q + IL LRLR L K    +++ E + LLAE  +++++L   ++    ++ E+ EV  
Sbjct: 428 ELQAEYILELRLRRLTKFSRLELEREKEQLLAEIAELEAILADDRRLRTLVSDEMAEVAA 487

Query: 485 IFSKSTDLGRRRTTFCEV--------SRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            +        RRT   E         + A +A+     IE  P   ++S  G +      
Sbjct: 488 TYGTP-----RRTILLESAGGSSVTGAPAARASATPLEIEDSPCWALLSGTGLLARTADG 542

Query: 537 S--VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG------- 587
                 +     + D L  A+       I  +++ G+   L   +L +            
Sbjct: 543 DAPRRTADARRAKHDVLASAVATTARADIGAVTSRGRMVRLSVLDLPALPPTDGPPSLSG 602

Query: 588 -EAIQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              +  ++ L   + +V           L + +++G    V   +     R     + + 
Sbjct: 603 GVPLGEVVSLQPGERVVALASLADDAPTLALATAQGTVKRVAPGD-APGNRDEWVVIALR 661

Query: 646 SEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
            ++ +   V V   D + +V  +  LL F    +    R   G+       G        
Sbjct: 662 DDDSVVGAVAVADDDELVLVSSDSSLLHFPASAVRPQGRAAGGMAGIKLAAGQRVVAFAA 721

Query: 704 KICEGLTW------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              + +              +        +           R   G    +   
Sbjct: 722 VRPDAVADAVVVTVSGSSSALPGTQAGNAKVSPFETYPGKGRATGGVRSHRFLK 775


>gi|124267742|ref|YP_001021746.1| DNA topoisomerase IV subunit A [Methylibium petroleiphilum PM1]
 gi|124260517|gb|ABM95511.1| DNA topoisomerase IV subunit A [Methylibium petroleiphilum PM1]
          Length = 769

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 264/766 (34%), Positives = 412/766 (53%), Gaps = 44/766 (5%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N    N    +N  A++L    E  YL YALS +K RA+PD+ DG KPV RRI++AM  +
Sbjct: 2   NQLELNAAGGDNGDAITLAHYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYAMERL 61

Query: 65  GLDFGA----AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           GL F         KSAR+VG+V+G+ HPHGD + YD+LVR+AQ F QRYPLI GQGNFG+
Sbjct: 62  GLAFTTAGGPKAMKSARVVGDVLGRYHPHGDTAAYDALVRMAQDFSQRYPLIDGQGNFGS 121

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+  +  L+L  +DE  VDF   Y+    EP   P++ P +L NG 
Sbjct: 122 RDGDGAAAMRYTEARLAPITRLLLDEIDEGTVDFIPNYDGSTQEPKQLPARLPFVLLNGA 181

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVG+AT IPSHN++E+  AA+ALI   ++S ++L   + GPD+P GG I+ +   I 
Sbjct: 182 SGIAVGLATEIPSHNLREVAAAAVALIKQEKLSDDELFALLPGPDYPGGGQIISAEADIR 241

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG  +VRA+W +E++ RG W +VVTE+P      +++E+I EL   K     + 
Sbjct: 242 DAYRSGRGSLKVRAKWKIEDLARGQWNLVVTELPPGTSAQKVLEEIEELTNPKVKAGKKA 301

Query: 301 IRDESAE--------------------DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +  E  +                     VR+V  PK+R+++   L+  +   + +ET   
Sbjct: 302 LSAEQTQLKTTVLAVLDAVRDESGKEAAVRLVFEPKSRTVEQQELINVLLAHTSLETSAS 361

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +N+ ++     P    +  +L EW+  R E + RR+  R+  +  R+ IL+G  +  LNI
Sbjct: 362 INLTMVGADGRPTQKSMRQMLTEWIGFRLETVQRRTRHRLGKVLDRIHILEGRQLVLLNI 421

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I IIRN D+PKP ++ RF L++ Q + IL +RLR L +LE  +I+ EL +L  E+ +
Sbjct: 422 DEVIRIIRNADEPKPALIERFRLSDRQAEDILEIRLRQLARLEAIKIEQELKSLREEQGR 481

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ +LNS       +  EI    +          RRT      +A+K  + +  +  EP+
Sbjct: 482 LEEILNSPAALKRTVVKEIEADAKTHGDE-----RRTLI----QAEKKAVAEVKVVDEPV 532

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVVIS++GW+R+ + H  D +A  FK GD+L       T D +L+  ++G+ Y++    L
Sbjct: 533 TVVISSKGWVRARQGHGHDAAAFAFKAGDTLYGTFECRTVDTLLVFGSNGRVYSVAVSGL 592

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              RG G+ I  +I+L         F   +   LL+ ++ G   + +  ++ +  R GK 
Sbjct: 593 PGARGDGQPITSMIELESGTQPQHYFAGPADATLLLANTGGYGLLAKAGDLQSRQRGGKG 652

Query: 641 FLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGI 697
           FL ++  EK     +      +A +    +LL+F++D +    + G+G+ L   +    +
Sbjct: 653 FLTLAEGEKPLPPSRADAAGQIACLSLGGRLLVFALDDLKLQPKGGRGLTLMDLEAKDAL 712

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDL-----LGWLGKRGGVGS 738
             V  F   +    +  +GR     +  L       + G R   G 
Sbjct: 713 VSVAAF---DKTLRVLGSGRGGKAKDETLGAAAVAVYKGARARKGK 755


>gi|293380598|ref|ZP_06626653.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 214-1]
 gi|290922845|gb|EFD99792.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 214-1]
          Length = 819

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/764 (27%), Positives = 381/764 (49%), Gaps = 32/764 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+  V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L++Y+ GPDFPTG  IV   + I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGA-IVMGTKGIKEAYKTGRGRIKV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHM-TPVQVGLKRILASYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----RFSLTENQV 428
            +R+ F +   + R+EI++GL+ A   +D++I  IR          +        TE Q 
Sbjct: 361 TKRTKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYNKFTEKQA 420

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +  ++ +E D L    EK   LL+       +I  E+  VK+ F+ 
Sbjct: 421 EAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRATLEKEIIKELNAVKKEFAN 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                 RRT   E   A     ++A++  E + V+IS  G+++     S    +      
Sbjct: 481 P-----RRTQISE-ESAKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTNDDDNGL 534

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIV 603
            +GD +       T   + L +  G     P         +  G+ +   I L+ ++ I+
Sbjct: 535 PDGDKVVYKNTLSTLTNLYLFTNKGNVIYRPVHELIETKWKETGQHLSQEIGLDSDEQII 594

Query: 604 TAFVYD---STCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEK-MKLVVKV 656
             FV+D   + C  ++ ++ G    +E + +        +  T +K+  ++  +  V  +
Sbjct: 595 RVFVFDKLNTDCNFILATNDGYIKQLELANLQPTRTYKSRAMTAIKLKGKDSYVVGVDLI 654

Query: 657 TGD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
             D    + +       + + + +IP    +  GV+  + KD            + +  +
Sbjct: 655 KSDNHKEITLFTHRAYAIRYDVSEIPTSGAKAVGVKSANLKDDDYIVNYVLVDSKYVDLM 714

Query: 713 DS---AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
                  R   +     L     R   G LV +    +  + ++
Sbjct: 715 HVGLITQRGAFKQFKLKLVNKVSRAKRGVLVLRELKNKPHRIVA 758


>gi|81300503|ref|YP_400711.1| DNA topoisomerase IV subunit A [Synechococcus elongatus PCC 7942]
 gi|81169384|gb|ABB57724.1| DNA topoisomerase IV subunit A [Synechococcus elongatus PCC 7942]
          Length = 858

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 233/819 (28%), Positives = 387/819 (47%), Gaps = 94/819 (11%)

Query: 6   ISNSNTLV-EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +++S      + +   +L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+
Sbjct: 1   MTDSIQFNGADRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHEL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL     F+KSAR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL++G GNFG+ID D
Sbjct: 61  GLTPDRPFRKSARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDND 120

Query: 125 SAAAYRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE R+  V+   +L+ + E+ VDF   ++    EP V P++ P LL NG SGI
Sbjct: 121 PPAAMRYTETRLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ EI +A +ALID P++S   LL Y+ GPDFPTGG ++   + I+++Y
Sbjct: 181 AVGMATNIPPHNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVI-GSQGILDAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             GRG   VR    +EE+  G        I+VTE+PYQV K+  IEK+A+L+   ++  +
Sbjct: 240 LEGRGSIPVRGIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            DIRDES  +   V+    R    D ++E ++  + +++ F   +  +     PQ + L 
Sbjct: 300 ADIRDESDREGMRVVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIV-EGQPQQLSLK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKP 415
            +L+++L+ R   L RR    ++  +RR+ IL+GLL +  ++D +I I+R        + 
Sbjct: 359 QLLEQFLSFREGTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTARA 418

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            +   F L E Q DA+L++ +R +  LE+ Q++ E  NL  ++ ++ +LL         +
Sbjct: 419 RLQVHFDLNERQADAVLSMPMRRITSLEQEQLQQEAANLREQQARLQTLLGDRPTLLKAL 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---------------- 519
             ++R++K  F        RRT   E+     A  +Q      P                
Sbjct: 479 KKDLRDLKRRFGSP-----RRTRLPEIPPEAIAAPRQVTAPVAPISAPTPATAGPIQGEL 533

Query: 520 --------------------------ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
                                       + +S+R  +++  +  ++              
Sbjct: 534 IFNSATDSAVPDSAPVIAPRFAFQESTWLCLSDREQLQAASATELEPWLKAKSGAQERTD 593

Query: 554 A----LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY- 608
                  A     +L+++ +G      A        H   I  L+        + A +  
Sbjct: 594 FPKVLQWADPRQDLLVITAEG-----RAYRRSLREVHPGPIANLLPTGRQSTAIAATLLL 648

Query: 609 ---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
                   LL++SS+G    +  +E+   + +G   LK++ EE ++           ++G
Sbjct: 649 PLASEERSLLLLSSQGRVKRLALTELAEISNRGLQLLKLAEEEIIQAACLCAPQQEVLLG 708

Query: 666 ENRK------------LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
            +                  S        RG+  RL   ++G    + C  +  G   + 
Sbjct: 709 SSGGRLLRLSLSELPLASRIS--------RGQ-PRLLRLREGE-QPLGCLSLPSGQDLLL 758

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +     +     L  L + G +G+   +   +  + ++
Sbjct: 759 VSTLGLVKRLPLGLLRLCRAGDLGNNAFRFTDKRDRLIA 797



 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 48/137 (35%), Gaps = 3/137 (2%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           +  L  L   E + ++ A        +LL S+ G+   L    L            L+ L
Sbjct: 679 NRGLQLLKLAEEEIIQAACLCAPQQEVLLGSSGGRLLRLSLSELPLASRISRGQPRLLRL 738

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE-EKMKLV 653
              +  +      S   LL+VS+ G    +    +        G    + + + +++  +
Sbjct: 739 REGEQPLGCLSLPSGQDLLLVSTLGLVKRLPLGLLRLCRAGDLGNNAFRFTDKRDRLIAL 798

Query: 654 VKVTGDHVAVVGENRKL 670
           +      +A+   +++L
Sbjct: 799 LPAPSQGLAIFASDQRL 815


>gi|124021719|ref|YP_001016026.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962005|gb|ABM76761.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
          Length = 829

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 221/777 (28%), Positives = 370/777 (47%), Gaps = 46/777 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE ++ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAEERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+P++ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   +L  + E+ VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALI  P++S +KLL  I GPDFPTGG I+     I E+Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGT-GIHETYLKGRGSI 239

Query: 251 RVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    VEE+  G        +VVTE+PYQ+ K+  IEK+A+L+   +I  + DIRDES
Sbjct: 240 PMRGVAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P+ ++  +   + +++ F   +  L     PQ + L  +L+ +L
Sbjct: 300 DREGMRIVVELRRDANPENVLGDLHRRTSLQSNFGAILLALV-NGQPQQLSLRKLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            +R   + RR++  +     R+E+++GL+ A   +  +IA+I+            + +  
Sbjct: 359 EYRELTVIRRTNHALGKTKTRLEVVEGLITALNALQAVIAMIQEAADAAAARARLMVQLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q DA+L + LR L  LE+  ++ E   L  ++E++  LL + +     +  E+R++
Sbjct: 419 LNEKQADAVLAMPLRRLTSLEQSSLRQEAKELQGKQEQLQFLLENRESMLEVLIQELRQL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-------------KEPITVVISNRGW 529
           K+ F+       RRT   E      A                          ++I     
Sbjct: 479 KKRFNNP-----RRTRLVEGGDDLVAERAANQRPNAEVQRQQALSALPSDGRILIQQDSQ 533

Query: 530 IRSLKSHSVDLSALHF-----KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           ++ +    +    L+            ++ L      R+L ++ +G+   +        +
Sbjct: 534 VKVMSPQILGRLHLNEACKLGDGPSPARLILPIEPAPRLLAVTNNGRVALVR-WEFAGQQ 592

Query: 585 GHGEAIQLLIDLNHNQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  L   L   + ++  F    D    L ++SS G    +   E++  + +  T +
Sbjct: 593 PGSLERFLPGGLE-KETLINIFPLPVDQNLSLGLLSSDGRFKRLPLEEVMELSGRAATIV 651

Query: 643 KVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQS-YKDGGI 697
           K+     +K        D V +     +++  ++  D +P M +  +G        +  +
Sbjct: 652 KLKDGVVLKSAFICKANDDVILASSIGRVIRINVNNDSMPLMGKLAQGPMTMRLLPEEMV 711

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL--VPKGFPRS-GKFL 751
              I        T +                 + +RG +G +    K   R   + +
Sbjct: 712 VGAISCPPNCESTVLLVTRLGKFAKLLVSSIRVCQRGDLGEIGLTIKDSSRDQDRVV 768


>gi|295693009|ref|YP_003601619.1| DNA topoisomerase iv, a subunit [Lactobacillus crispatus ST1]
 gi|295031115|emb|CBL50594.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus ST1]
          Length = 818

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/763 (27%), Positives = 384/763 (50%), Gaps = 31/763 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+  V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+  P+ S+E L++Y+ GPDFPTG  IV   + I E+YR GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKYPDASLEDLMKYVKGPDFPTGA-IVMGTKGIKEAYRTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHM-TPVQVGLKRILASYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR        K  +++++  TE Q +
Sbjct: 361 TKRTKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTEKQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E D L    EK   LL+       +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRATLEKEIIKELNAVKKEFANP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRT   E   A     ++A++  E + V+IS  G+++     S   +        
Sbjct: 481 -----RRTQISE-ESAKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTNDDDNGLP 534

Query: 550 SLKIALHAHTTDR---ILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
                ++ +T      + L +  G     P         +  G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVVYENTLSTLTNLYLFTNKGNVIYRPVHELIETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVYD---STCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEK-MKLVVKVT 657
            FV+D   + C  ++ ++ G    +E + +        +  T +K+  ++  +  V  + 
Sbjct: 595 VFVFDKLNTDCNFILATNDGYIKQLELANLQPTRTYKSRAMTAIKLKGKDSYVVGVDLIK 654

Query: 658 GD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
            D    + +       + + + +IP    +  GV+  + KD            + +  + 
Sbjct: 655 SDNHKEITLFTHRAYAIRYDVSEIPTSGAKAVGVKSANLKDDDYIVNYVLVDSKYVDLMH 714

Query: 714 S---AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
                 R   +     L     R   G LV +    +  + ++
Sbjct: 715 VGLITQRGAFKQFKLKLVNKVSRAKRGVLVLRELKNKPHRIVA 757


>gi|239917820|ref|YP_002957378.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
 gi|281413687|ref|ZP_06245429.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
 gi|239839027|gb|ACS30824.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
          Length = 868

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 221/791 (27%), Positives = 358/791 (45%), Gaps = 70/791 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI+  MS MGL    
Sbjct: 20  PLEQENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILFMMSRMGLRPDR 79

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VGEV+GKLHPHGD ++YD++VRLAQPF  R P++ G GNFG++D D  AA R
Sbjct: 80  GHVKSARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLD-DGPAAPR 138

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM   A  +   +DE  VDF   Y+ +  +P V P+ +PNLL NGT+GIAVGMAT+
Sbjct: 139 YTEARMAPAALALTADLDEGTVDFVPNYDNQFQQPAVLPAAYPNLLVNGTTGIAVGMATN 198

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +  HN++E+   A  L+ +PE  +E ++ +I GPD P+GG IV   + + ++Y  GRG F
Sbjct: 199 MAPHNLREVVAGARHLLADPEAGLEAIMAHIPGPDLPSGGRIV-GLDGVRDAYATGRGTF 257

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DV 309
           R+RA   VE+V      +VVTE+PY V   ++IE+I   + AK++  + D+ D +   + 
Sbjct: 258 RMRAAVAVEQVSARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNG 317

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +        +P  ++ +++  + +E  F +N   L     PQ + L  +L+ ++ HR 
Sbjct: 318 LRLQIELKSGFNPQAVLAALYRHTPLEETFGINNVALVD-GQPQTLGLLPLLRVYVDHRL 376

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           +V+ RR+  R+     R+ +++GLL+A ++IDE+I IIR+ D     +  ++  F LT+ 
Sbjct: 377 DVVRRRTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLMGVFDLTQV 436

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q D IL LRLR L K    ++++E D L A   +++++L S  +    ++ E++ V +  
Sbjct: 437 QADHILELRLRQLTKFSRIELQAERDELQAAIAELEAILASDARLREVVSAELQAVADEH 496

Query: 487 SKSTDLGRRRTTFCEVSRADKATL----------------QQAMIEKEPITVVISNRGWI 530
                   RRT   E   A                        M+       ++S  G +
Sbjct: 497 GD-----DRRTVLLEAETAAAPAAGPAPSGPTPAGAAEAGVDLMVPDTACWALLSTSGRL 551

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------S 582
                 +        ++ D+    +       I  L++ G  + L A +L          
Sbjct: 552 LRTADRTPIAPQGRRRKHDAFASVVPTTARGEIGALTSAGALHRLQAVDLPVAGEPSAAP 611

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV--SSKGNAFIVEESEIIANTRKGKT 640
                     L+ L   + +V     D+    ++   ++ G    V         R+   
Sbjct: 612 AMTAALPAAELVPLAKGETLVALVPLDT----VMALGTAHGVVKRVRPE--WPLNRQVVD 665

Query: 641 FLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            + +   + +          D +  +    +LL ++   +      G GV       G  
Sbjct: 666 AVALKDGDAVVGAAPAPDEADQLVFLTRTGQLLRYAASAVRPQGPAGGGVAGIRLAAGDT 725

Query: 698 SDVICFKICEGLT--------------WIDSAGR---------SYNRSENDLLGWLGKRG 734
                      LT               +                 +           RG
Sbjct: 726 VLAFGVAPAASLTETGADAAAHPRPAVVVTVTDGEADVLGSAPGSVKVTPLGEYPAKGRG 785

Query: 735 GVGSLVPKGFP 745
             G    +   
Sbjct: 786 TGGVRAHRLLK 796


>gi|256384366|gb|ACU78936.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385198|gb|ACU79767.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455460|gb|ADH21695.1| DNA topoisomerase IV, A subunit [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 898

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 224/758 (29%), Positives = 403/758 (53%), Gaps = 36/758 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+     +  +    L   L  R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ 
Sbjct: 1   MSD-----KSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLN 55

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L F   +KKSAR+VGEVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDS
Sbjct: 56  LTFDKPYKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDS 115

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T+++ L+L+ ++++ V F   +++ ++EP V PS FPN+L NG +GIA 
Sbjct: 116 AAAMRYTEARLTKISNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAA 175

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT++P HN+ EI +A++++I NP I+I+++L+ + GPDFPTG  I+++++ I E++  
Sbjct: 176 GYATNMPPHNLSEIIDASISIIKNPNITIDQILKIVKGPDFPTGA-IIQNKQGIREAFLT 234

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   + ++W  E+       IVV EIPY+V K  L++KI ++I       +++IRDE+
Sbjct: 235 GKGKVIISSKWHQEKNN-----IVVDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDET 289

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++   N   + + + + +F  + +   +  N  ++   + P+ + L  I+K ++
Sbjct: 290 DRKGLRIVIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVD-KQPKQLGLIDIIKAYI 348

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
           +H +EV  +R+ F +   + R+EI+ GL+ A   +DE+I +IR  +        +V  F+
Sbjct: 349 SHYKEVFIKRTEFNLNKANLRLEIVNGLIKALSILDEVIKVIRKSENRIDAINNLVKTFN 408

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T NQ  AI+++RL  L   +  ++  E   L+ + +K   +LN+     N+I   + EV
Sbjct: 409 FTTNQSTAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNNNLVLDNEIISRLEEV 468

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ F        +R +  E    D    Q+ +I ++ I + IS  G+I+ + ++ ++ + 
Sbjct: 469 KKQFG------IKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNE 522

Query: 543 ---LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLN 597
                 K  D           D ++L+S     Y++P         +  G  I  +    
Sbjct: 523 LSSFGKKPNDMWISQGVCSNLDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVATTQ 582

Query: 598 HNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
            N+ I+ AF+       T  LL+VS  G     + S++      K    +K+S ++ +  
Sbjct: 583 PNETIINAFIIKEFINSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVY 642

Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
              ++    +  ++ +N   + ++I+ IP  S   KGV+  + KD  I   +     + +
Sbjct: 643 ADLISSKTSYCCIITKNGYAVRYNIEDIPVQSTISKGVKAANLKDDYIISALSLDNNKDV 702

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               +        +N +  ++  R   G  +     ++
Sbjct: 703 LIFTNKNNYKRLDQNLIPIYI--RPKKGIRILVEKKKN 738


>gi|116618458|ref|YP_818829.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097305|gb|ABJ62456.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 812

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 203/752 (26%), Positives = 369/752 (49%), Gaps = 28/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM + G  +   +
Sbjct: 1   MADRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++D D AAA RYT
Sbjct: 61  RKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A  ++  + ++ VD    +++   EP V PS+ P+L  NG +GI+ G AT IP
Sbjct: 121 EARLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EI  A + L+D+P  ++ +L+ Y+ GPDFPTGG IV+  + I ++Y+ GRG   V
Sbjct: 181 PHNLKEINAALIYLLDHPAATLSQLMRYVKGPDFPTGG-IVQGLDGIKKAYKTGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + ++  G   I +TE+PY+V KS L+ KI  + + K +  + ++RDES  +   +
Sbjct: 240 RAKTEISDLRAGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVTGISEVRDESDREGMSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +   ++  + + ++  +F  +D++  +     V    + P  + L   L+ +L+ R+EV+
Sbjct: 300 VIELSKEANANGILTYLFKKTDLQISYNF-NMVAIHDQRPVHVGLKAGLEAFLSFRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            +RS++ +     R  I++GL+     +DE++A IR           +++RF  T+ Q +
Sbjct: 359 LKRSAYELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLINRFEFTQAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  Q++ E   L  +   ++ +++      + I  EI+ + + +S  
Sbjct: 419 AIVTLQLYRLTNTDVTQLEEEFSQLNDKINCLNQIIHEESALKDVIREEIKAITKAYSSP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                 R +  E    +        I +E + V++S  G+ +     S   S       +
Sbjct: 479 ------RRSVIEAEVENLVIDTAVTIAEEDVQVLVSRNGYYKRASLRSFKASDNENGLAE 532

Query: 550 SL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL---NHNQDIVT 604
                     +TT+ + + +  G     P   L   +           L   + ++ ++ 
Sbjct: 533 DDLVVFQGTLNTTNHLFMFTNKGNVIYRPVHELPDTKWKDTGEHFSQQLSNWDKDEVVIK 592

Query: 605 AFVYD---STCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEK-MKLVVKVTG 658
           A   D         +VS+ G        +I+  A  +K    +K+  +   +  V     
Sbjct: 593 AIAVDNLEQGGAFTIVSNDGFIKQTTLVDIVPKAYKKKSSMAIKLKKDVSYVVNVAYFQN 652

Query: 659 ---DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
               +V ++  N   L ++I ++PE+  R  GV+    +D        F   +  +    
Sbjct: 653 VKRQNVLLLSHNGVGLRYAIKEVPEIGSRTSGVKAMDLRDDDTIKAALFITDDKQSVAIV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           A     +     L    KRG  G L+     +
Sbjct: 713 AENGAFKYMPVSLINHSKRGNKGVLIF--TQK 742


>gi|227878638|ref|ZP_03996555.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256843236|ref|ZP_05548724.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256850407|ref|ZP_05555835.1| DNA topoisomerase IV subunit A [Lactobacillus crispatus MV-1A-US]
 gi|262046444|ref|ZP_06019406.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|227861758|gb|EEJ69360.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256614656|gb|EEU19857.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256712804|gb|EEU27797.1| DNA topoisomerase IV subunit A [Lactobacillus crispatus MV-1A-US]
 gi|260573315|gb|EEX29873.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus MV-3A-US]
          Length = 819

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 210/764 (27%), Positives = 380/764 (49%), Gaps = 32/764 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+  V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L++Y+ GPDFPTG  IV   + I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGA-IVMGTKGIKEAYKTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHM-TPVQVGLKRILASYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----RFSLTENQV 428
            +R+ F +   + R+EI++GL+ A   +D++I  IR          +        TE Q 
Sbjct: 361 TKRTKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYNKFTEKQA 420

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +  ++ +E D L    EK   LL+       +I  E+  VK+ F+ 
Sbjct: 421 EAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRATLEKEIIKELNAVKKEFAN 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RRT   E   A     ++A++  E + V+IS  G+++     S   +       
Sbjct: 481 P-----RRTQISE-ESAKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTNDDDNGL 534

Query: 549 DSLKIALHAHTTDR---ILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIV 603
                 ++ +T      + L +  G     P         +  G+ +   I L+ ++ I+
Sbjct: 535 PDGDKVVYENTLSTLTNLYLFTNKGNVIYRPVHELIETKWKETGQHLSQEIGLDSDEQII 594

Query: 604 TAFVYD---STCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEK-MKLVVKV 656
             FV+D   + C  ++ ++ G    +E + +        +  T +K+  ++  +  V  +
Sbjct: 595 RVFVFDKLNTDCNFILATNDGYIKQLELANLQPTRTYKSRAMTAIKLKGKDSYVVGVDLI 654

Query: 657 TGD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
             D    + +       + + + +IP    +  GV+  + KD            + +  +
Sbjct: 655 KSDNHKEITLFTHRAYAIRYDVSEIPTSGAKAVGVKSANLKDDDYIVNYVLVDSKYVDLM 714

Query: 713 DS---AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
                  R   +     L     R   G LV +    +  + ++
Sbjct: 715 HVGLITQRGAFKQFKLKLVNKVSRAKRGVLVLRELKNKPHRIVA 758


>gi|195952749|ref|YP_002121039.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1]
 gi|195932361|gb|ACG57061.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1]
          Length = 766

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 240/722 (33%), Positives = 390/722 (54%), Gaps = 42/722 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
            + YL YA+S I  RAIPD+RDG KPV RRI++AM EM L     FKK ARIVG+ +G+ 
Sbjct: 13  RQSYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMDLTPDKPFKKCARIVGDTMGRY 72

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGDQ++YD+LVR+AQ F  RYPL+ GQGNFG+IDGD  AA RYTEA+++++   +L+ 
Sbjct: 73  HPHGDQAIYDALVRMAQDFNLRYPLVIGQGNFGSIDGDPPAAMRYTEAKLSKITLSLLED 132

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           ++ D VDF   ++E   EP V P+K PNLL NGT+GIAVG+ATSIP HN++E+C+A +AL
Sbjct: 133 IENDTVDFVPNFDESVMEPQVLPAKMPNLLCNGTTGIAVGLATSIPPHNLKEVCDALVAL 192

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
             N +I++E+L++YI GPDFPTGGIIV   E   E Y+ GRG   V+A+  VE+   G  
Sbjct: 193 AQNQDITVEELMQYIKGPDFPTGGIIVG--EVSPEVYKTGRGQVTVQAKARVEKTSSGRE 250

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            I++TEIPY V K+ LI+KIAEL  + ++  + D+RDES ++   ++    R    + ++
Sbjct: 251 QIIITEIPYMVNKAELIKKIAELARSGKLKEISDLRDESDKEGIRIVIELKRDAKGEAVL 310

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           + ++  + +   FP+NM  L  G  P+++ L  IL E+  HR  V++RR+ F ++  + R
Sbjct: 311 KKLYKNTSLRKNFPINMVALV-GLEPKLLNLKDILLEFFKHRLNVIYRRTEFFLRKAEER 369

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLE 443
           + I++GLLI   +ID+II  IR     +      +S ++LTE Q  AIL+LRL+ L  LE
Sbjct: 370 LHIVEGLLICIKDIDKIIETIRASQDTQEAKEKLMSGWNLTEKQAQAILDLRLQRLTSLE 429

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             +++ E D L+   +   ++L + +++ N    E +E+ + F        RRT      
Sbjct: 430 TSKLQKEHDELIENIKTYKNILENKQERINIFIKETKELADRFKDP-----RRTFI---- 480

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
                  +  + E   + V ++  G+++ ++    + S +                T+ +
Sbjct: 481 -------EGMIKEDTYVDVFVTRNGFVKPIELLEEEKSPIVNVASLKF--------TEGL 525

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGN 622
            ++S  G+ Y       LSG             + ++ +V AFV +    +LL++++KG+
Sbjct: 526 FIVSNKGRVYWTAGSEALSGSSIHMK-------DTDEHVVGAFVREQYNSRLLILTNKGS 578

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVV-KVTGDHVAVVGENRKLLIFSIDQI-PE 680
              +   E    T+ G   LK+S  E++  +        + ++ +   +       +   
Sbjct: 579 IKKIPLVEFEYKTQ-GFQILKLSEGEEVVYISGSQDESEILILTKKGYINRIQTQDVGAT 637

Query: 681 MSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            S  K ++     +   + +    + + +  +      Y +           R   G  V
Sbjct: 638 TSSSKAIQCIKLNENDEA-ISVRALDDKIFGLLITEEGYAKKIKLEDIPKKSRTSQGINV 696

Query: 741 PK 742
            K
Sbjct: 697 LK 698


>gi|227495518|ref|ZP_03925834.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831065|gb|EEH63448.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 805

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 232/775 (29%), Positives = 365/775 (47%), Gaps = 38/775 (4%)

Query: 6   ISNS-NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +S + +  V EN+  + +   +   +L YA S I  RA+PD RDG KPV RRI+  MS+M
Sbjct: 1   MSTTVSPTVAENIIEIDVSDEMRGSFLEYAYSVIYARALPDARDGCKPVQRRILFQMSQM 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL       KS  +VGEV+GKLHPHGD ++YD+LVRLAQPF  R PL+ G GNFG++D D
Sbjct: 61  GLRPEKGHVKSQSVVGEVMGKLHPHGDAAIYDALVRLAQPFNLRLPLVDGHGNFGSLD-D 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+   A  ++  +DED VDF   Y+  + +P V P+ FP LL NG  GIA
Sbjct: 120 GPAAARYTEARLAPAAMDLVSNLDEDVVDFVPNYDNRNMQPDVLPAGFPQLLVNGAMGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+I  HN+ E+  A   LIDNPE +   L+ ++ GPD P GGIIV   + I E+Y 
Sbjct: 180 VGMATNIAPHNLGEVVAATCHLIDNPEATTADLMRFVPGPDLPEGGIIV-GLDGIREAYE 238

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG F+ RA+  VE V      +V+TE+PY V   R+IEKI E + +K++  + ++ + 
Sbjct: 239 TGRGAFKTRAKITVERVTARKQGLVITELPYLVGPERVIEKIKEAVNSKKLQGISNVSNL 298

Query: 305 SA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           +       ++       +P  +M  +F  + +E  F +N   L     P  + L  +L+ 
Sbjct: 299 TDRHHGVRLVVEVKNGFNPQAVMSQLFKHTPLEDNFSINAVALVD-GRPMTLGLKQMLEV 357

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           ++ HR  V+ RRS FR+Q    R+ +++GLL+A ++ID++IAIIR+ D     +  ++  
Sbjct: 358 YVKHRLSVIERRSQFRLQKALDRLHLVEGLLVAIVDIDDVIAIIRSSDDVDSARTRLMDV 417

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q D IL+LRLR L K    ++++E   LL++ E +  +L S +     +  E+ 
Sbjct: 418 FELSEIQADHILSLRLRRLTKFSRIELETEQAELLSQIEGLRHILGSEQALRTVVRDELV 477

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EV +  +             +V  A KA      I   P+ VV++  G +  +       
Sbjct: 478 EVSKRLATPRRTVLLSADPQQVETAGKAAAVPLEIPDAPVQVVLTANGGLIRVDGAEPLE 537

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS------GRGHGEAIQLLI 594
                   D+ ++A+ A    ++ L+   G  + +   +L              AI    
Sbjct: 538 KTESRGIWDTYRVAISATARSQVGLIDASGMLHRVEVVDLPEVPRSASNPSFAGAISASQ 597

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKVSSEEK 649
            L      V     D       V+  G          +              + ++  ++
Sbjct: 598 LLGTEVCPVGLIHVDGDDISGFVTKLGQIKRMRPDFAKADSFET--------ILLTDGDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +        +  + +V  + +LL     +I    R   GV      +G       F   E
Sbjct: 650 VLFAAPCPDEAEIVMVTSDAQLLRTPAAKIRPQGRVAGGVVGMVIGEGARLLEANFVPSE 709

Query: 708 GLTWIDSAGRSYNR--------SENDLL-GWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G   +  A  +             +DL    +  R   G    +      + + +
Sbjct: 710 GAQIVTVAAAADGLFGEMQSSVKVSDLEIYPVKGRATQGVRCHRFLKSESELVMA 764


>gi|313665343|ref|YP_004047214.1| DNA topoisomerase IV, A subunit [Mycoplasma leachii PG50]
 gi|312949298|gb|ADR23894.1| DNA topoisomerase IV, A subunit [Mycoplasma leachii PG50]
          Length = 898

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 225/758 (29%), Positives = 399/758 (52%), Gaps = 36/758 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+     +  +    L   L  R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ 
Sbjct: 1   MSD-----KSKIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLN 55

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L F   FKKSAR+VGEVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDS
Sbjct: 56  LTFDKPFKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDS 115

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T+++ L+L+ ++++ V F   +++ ++EP V PS FPN+L NG +GIA 
Sbjct: 116 AAAMRYTEARLTKISNLLLEDLEKNTVVFAPNFDDSENEPTVLPSYFPNILVNGATGIAA 175

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT++P HN+ EI +A + +I NP I+I+++L+ + GPDFPTG  ++++++ I E++  
Sbjct: 176 GYATNMPPHNLSEIIDATINIIKNPNITIDQILKIVKGPDFPTGA-VIQNKQGIREAFLT 234

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   + ++W  E+       IV+ EIPY+V K  L++KI ++I       +++IRDE+
Sbjct: 235 GKGKVIISSKWHQEKNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDET 289

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++   N   + + + + +F  + +   +  N  ++   + P+ + L  I+K ++
Sbjct: 290 DRKGLRIVIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVD-KQPKQLGLIDIIKAYI 348

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
           +H +EV  +R+ F +   + R+EI+ GL+     +DEII +IR  +        +V  F 
Sbjct: 349 SHYKEVFIKRTQFNLNKANLRLEIVNGLIKTLSILDEIIKVIRKSENRLDAINNLVITFK 408

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T NQ  AI+++RL  L   +  ++  E   L+ + +K   +LN+     N+I   + EV
Sbjct: 409 FTTNQATAIVDMRLYRLTSTDVNKLLLEKTELIEKIKKYQEILNNSLVLDNEIISRLEEV 468

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ F        +R +  E    D    Q+ +I ++ I + IS  G+I+ + ++ ++ + 
Sbjct: 469 KKQFG------IKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNE 522

Query: 543 ---LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLN 597
                 K  D           D ++L+S     Y++P         +  G  I  +    
Sbjct: 523 LSSFGKKPNDMWISQGVCSNLDHLILISDQANYYSIPLYKISSSKWKDQGVHINSVATTQ 582

Query: 598 HNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
            N+ I+ A V       T  LL+VS  G     + S++      K    +K+S ++ +  
Sbjct: 583 PNETIINALVIKEFINSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVY 642

Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
              V+    +  +V +N   + ++I+ IP  S   KGV+  + KD  I   +  +  + +
Sbjct: 643 ADLVSSKTSYCCIVTKNGYAVRYNIEDIPIQSTISKGVKAANLKDDYIISALSLQNNKDV 702

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               +        +N +  ++  R   G  +     ++
Sbjct: 703 LIFTNKNNYKRLDQNLIPIYI--RPKKGIRILVEKKKN 738


>gi|163841149|ref|YP_001625554.1| DNA topoisomerase IV subunit A [Renibacterium salmoninarum ATCC
           33209]
 gi|162954625|gb|ABY24140.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
          Length = 851

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 224/770 (29%), Positives = 373/770 (48%), Gaps = 51/770 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MSEMGL       K
Sbjct: 17  ENIIDIDVSQEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLHPDRGHVK 76

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D    AA RYTEA
Sbjct: 77  SARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLDA-GPAAPRYTEA 135

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  +   +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAVGMAT++  H
Sbjct: 136 RLAAAALTLTDHLDEDVVDFVPNYDNQLTQPEVLPAAFPNLLVNGATGIAVGMATNMAPH 195

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  LI +PE++++ ++ ++ GPD PTGG IV   + I E+Y  GRG F+ RA
Sbjct: 196 NLVEVISAARHLIAHPEVTLDDVMRFVPGPDLPTGGRIV-GLDGIREAYETGRGSFKTRA 254

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE++      +VVTE+PY V   ++IEKI + + AK++  + DI D +  +    ++
Sbjct: 255 KIDVEQLTARRTGLVVTELPYTVSPEKVIEKIKDGVNAKKLQGISDIVDLTDRNHGLRLV 314

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                  +P  +++ ++ L+ ME  F +N   L     P+ + L  +L+ ++AHR +V+ 
Sbjct: 315 IELKNGFNPQAIIQQLYKLTPMEDSFGINNVTLVD-GQPKTLGLLELLRVYVAHRIDVVR 373

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR++FR+     R+ +++G+LIA L+IDE+I IIR  ++    +  +++ + L+E Q + 
Sbjct: 374 RRTAFRLGKKKDRLHLVEGMLIAILDIDEVIQIIRTSEETAAARDRLIAIYDLSEIQANY 433

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L K    +++ E D L  E E+++ +LNS       ++ E+ E+ E +    
Sbjct: 434 ILELRLRQLTKYSRIELEKEQDELRKEIEELERILNSEPVLRELVSSELAEIAEKYGTP- 492

Query: 491 DLGRRRTTFCEVSRADKATLQ--------------QAMIEKEPITVVISNRGWIRSLKSH 536
               RRT   E         +                 I  +P  V++S+ G I    + 
Sbjct: 493 ----RRTVLLESEAVSPTVAKALAAATTPGKATPLALEIADDPCWVLLSSSGQIARTSTR 548

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--------GE 588
                +    + D  K  +       +  +++ G+   L   ++              G 
Sbjct: 549 EALSDSGARTKHDVFKSVIATSARGEVGAVTSAGRMLRLQVLDMPVLPPTAGLPNLAGGV 608

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
             +  I L   + +++    D+   + + + +G    V         R+    + +  ++
Sbjct: 609 PAKEFITLLKGESLISFVPIDA--VVALGTKQGIVKRVTPE--YPLNREDWEIISLKDKD 664

Query: 649 KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS--DVICFK 704
            +         D +  + E  +LL FS   +    R   G+         +     +   
Sbjct: 665 SVVAAAAAQDDDELVFITEQAQLLRFSATAVRPQGRTAGGMAGIKLASNDVVLSFAVVAA 724

Query: 705 ICEGLTWIDSAGR---------SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                  +  +G             +  +        R   G    +   
Sbjct: 725 GDPAAVVVSISGSTDALPGTAPGSAKVSDFSEYPPKGRATGGVRAHRFLK 774


>gi|294789295|ref|ZP_06754533.1| DNA topoisomerase IV, A subunit [Simonsiella muelleri ATCC 29453]
 gi|294482720|gb|EFG30409.1| DNA topoisomerase IV, A subunit [Simonsiella muelleri ATCC 29453]
          Length = 759

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 264/747 (35%), Positives = 412/747 (55%), Gaps = 37/747 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L    E  YL YA+S +K RA+P ++DG KPV RRI+ AM +MGL  GA   KSAR+V
Sbjct: 6   LELAPYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLVHGAKPVKSARVV 65

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEA +T +
Sbjct: 66  GEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGVGNFGSRDGDGAAAMRYTEACLTPL 125

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L  +++  VDF   Y+    EPV  P++ P +L NG SGIAVGMAT IPSHN+ E+
Sbjct: 126 AELLLSEINQGTVDFVPNYDGAFDEPVSLPARLPMVLLNGASGIAVGMATEIPSHNLNEV 185

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +AA+AL+  P + +  L+++I  PDF  GG I+   + +   Y  G+G  RVRAR+ ++
Sbjct: 186 TQAAVALLKKPSLQLTDLMDFIPAPDFAGGGHIITPTKDLQHIYETGKGSLRVRARYQID 245

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------------------LEDI 301
           ++ RG W ++V+E+P     ++++ +I E    K                      +E +
Sbjct: 246 KMARGQWRVIVSELPPNTSAAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIEKV 305

Query: 302 RDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES     VR+V  PK+  ++P+  + ++   + +E    +N+ ++ M   P    L  
Sbjct: 306 RDESDSEHPVRLVFEPKSSRIEPEHFVNTLMAQTSLEGNVSVNLVMMGMDNRPAQKNLKT 365

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL+EWL +R   + RR   R+ A+++R+ IL G +IA+L+IDEII +IR  D+PK  ++ 
Sbjct: 366 ILQEWLDYRVATVTRRLQHRLHAVEKRIHILDGRMIAFLHIDEIIRVIRESDEPKQDLIR 425

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F LTE Q D IL +RLR L +LE  ++KSEL+ L  E+  + +LL+    +   I  E+
Sbjct: 426 QFGLTEIQADDILEIRLRQLARLEGVKLKSELNELREEQGSLKNLLSDEDAKKKLIIKEM 485

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +   + F  +     RRT       A +          EPIT+++S +GWIR+   H VD
Sbjct: 486 KADAKQFGDA-----RRTLV----EAAERATLTQTTADEPITLILSQKGWIRARAGHDVD 536

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           LS + FKEGD L+  L   T   +++L   G++YT+   ++  GRG G  +  LI++   
Sbjct: 537 LSQIAFKEGDDLQQVLQTRTVQSVVVLDDLGRSYTINPADVPKGRGDGVPLGSLIEIQAG 596

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--- 656
              +      +    L+  S G  FI +  ++ + ++ GKT + + + E +   V V   
Sbjct: 597 AKALAMLSGSNDDHYLLAHSGGYGFICKLEDLHSRSKTGKTVMMLEAGETVLPPVPVYLS 656

Query: 657 ----TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
                   V +  E ++LL F I ++  M++G+G++L   +      +I     E  T  
Sbjct: 657 ALINPDCKVVLATEQKRLLAFPIGEMKIMAKGRGLQLIRLQGNDKLILINVLKTENCTLD 716

Query: 713 DSAGRSY-NRSENDLLGWLGKRGGVGS 738
               R   ++    L+  + KRG  G 
Sbjct: 717 IVGKRGGESKEIVHLVDIINKRGHKGK 743


>gi|33862278|ref|NP_893838.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
 gi|33640391|emb|CAE20180.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
          Length = 829

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 220/777 (28%), Positives = 372/777 (47%), Gaps = 46/777 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE ++ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAEERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+P++ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   +L  + E+ VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALI  P++S +KLL  I GPDFPTGG I+     I E+Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGT-GIHETYLKGRGSI 239

Query: 251 RVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    VEE+  G        +VVTE+PYQ+ K+  IEK+A+L+   +I  + DIRDES
Sbjct: 240 PMRGVAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P+ ++  +   + +++ F   +  L     PQ + L  +L+ +L
Sbjct: 300 DREGMRIVVELRRDANPENVLGDLHRRTSLQSNFGAILLALV-NGQPQQLSLRKLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            +R   + RR++  ++    R+E+++GL+ A   +  +IA+I+            + +  
Sbjct: 359 EYRELTVIRRTNHALEKTKARLEVVEGLITALNALQAVIAMIQEAADAAAARARLMVQLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q DA+L + LR L  LE+  ++ E   L  ++E++  LL + +     +  E+R++
Sbjct: 419 LNEKQADAVLAMPLRRLTSLEQSSLRQEAKELQEKQEQLQFLLENRESMLEVLIQELRQL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-------------KEPITVVISNRGW 529
           K+ F+       RRT   E      A                          ++I     
Sbjct: 479 KKRFNNP-----RRTRLVEGGDDLVAERAANQRPNAEVQRQQALSALPSDGRILIQQDSQ 533

Query: 530 IRSLKSHSVDLSALHF-----KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           ++ +    +    L+            ++ L      R+L ++ +G+   +        +
Sbjct: 534 VKVMSPQILGRLHLNEACKLSDGPSPARLILPIEPAPRLLAVTNNGRVALVR-WEFAGQQ 592

Query: 585 GHGEAIQLLIDLNHNQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  L   L   + ++  F    D    L ++SS G    +   E++  + +  T +
Sbjct: 593 PGSLERFLPGGLE-KETLINIFPLPVDQNLSLGLLSSDGRFKRLPIEEVMELSGRAATIV 651

Query: 643 KVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQS-YKDGGI 697
           K+     +K        D V +     +++  ++  D +P M +  +G        +  +
Sbjct: 652 KLKDGVILKSAFICKANDDVILASNIGRVIRINVNNDSMPLMGKLAQGPMTMRLLPEEMV 711

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL--VPKGFPRS-GKFL 751
              +        T + +               + +RG +G +    K   R   + +
Sbjct: 712 VGAVSCPPNCESTVLLATRLGKFAKILVSSIRICQRGDLGEIGLTIKDSSRDQDRVV 768


>gi|160900515|ref|YP_001566097.1| DNA topoisomerase IV subunit A [Delftia acidovorans SPH-1]
 gi|160366099|gb|ABX37712.1| DNA topoisomerase IV, A subunit [Delftia acidovorans SPH-1]
          Length = 795

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 271/774 (35%), Positives = 405/774 (52%), Gaps = 66/774 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA-------F 72
           + L    +  YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +           
Sbjct: 18  LDLGQYAQRAYLEYALSVVKGRALPDVTDGLKPVQRRILYAMDRMGLSYSGPNHNTAAKP 77

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYT
Sbjct: 78  VKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYT 137

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++  L+L  +D   VDF   Y+    EP   P++ P  L NG SGIAVG+AT IP
Sbjct: 138 EARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPQQLPARLPFALLNGASGIAVGLATEIP 197

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN++E+ +A +ALI  P++S E+L + I GPD+P GG I+ S   I ++YR GRG  ++
Sbjct: 198 SHNLREVADACVALIKRPQLSDEELFQIIPGPDYPGGGQIISSASDIQDAYRTGRGSLKL 257

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL--------------- 297
           RARW +EE+ RG W +VVTE+P  V   +++E+I ++   K                   
Sbjct: 258 RARWKIEELARGQWQMVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASM 317

Query: 298 ---LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
              L+ +RDES     VR+V  PK   +    L+ ++   + +E+   +N+ ++ +   P
Sbjct: 318 LAVLDGVRDESSKDAPVRLVFEPKTGKVPQQELITALLAHTSLESSSSINLTMIGLDGRP 377

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
               L  +L+EW+A R+  + RRS  R+  +  R+ IL+G     LNID++IAIIR  D+
Sbjct: 378 VQKSLRLMLEEWIAFRQTTVTRRSQHRLAKVLDRIHILEGRQAVLLNIDKVIAIIRASDE 437

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           P+  ++  F+L+E Q D IL +RLR L +LE  +I+ EL  L  E+ K++ +L S     
Sbjct: 438 PRQALIDAFALSERQADDILEIRLRQLARLEAIKIEQELKELRTEQGKLEDILGSESTMR 497

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             I  EI    + F+ +     RRT      + +K  + +  +  EP TV+IS++GW+R+
Sbjct: 498 RLICKEIEADAKQFADA-----RRTLI----QEEKKVVAEVKVVDEPTTVIISDKGWVRT 548

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
            + H VD   L FK GDSL       T D++L   ++G+ Y++P   L  GRG G+ +  
Sbjct: 549 RQGHGVDAGTLSFKAGDSLHGTFECRTVDQLLAFGSNGRIYSVPVAQLPGGRGDGQPVTT 608

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           LI+L     I+  F       LL+  S G  F+    ++++  + GK F+ ++  E +  
Sbjct: 609 LIELEAGTQILYYFAGAEGTALLLSGSGGYGFVAMVGDMVSRQKAGKAFVTLADGETLCA 668

Query: 653 VVKVTG----------------------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
                G                       HV       ++L F I  +  M++ G+G  L
Sbjct: 669 PSTAYGVPMGARAEPQEGEQGAGLLLPATHVICASTGGRILTFEIASLKHMAKGGRG--L 726

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVGS 738
                     +           ID  GR        L         G RG  G 
Sbjct: 727 MLLDLEDKDTLAGAAAYTRSIRIDGVGRGGKERSETLEIRSLNNARGTRGRKGK 780


>gi|325962999|ref|YP_004240905.1| DNA topoisomerase IV subunit A [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469086|gb|ADX72771.1| DNA topoisomerase IV subunit A [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 835

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 227/778 (29%), Positives = 365/778 (46%), Gaps = 53/778 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            NT   EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MS+MGL  
Sbjct: 12  DNTPYTENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGLRP 71

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
                KSAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D D  AA
Sbjct: 72  DRGHVKSARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAA 130

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAVGMA
Sbjct: 131 PRYTEARLAAAALTLTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMA 190

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++  HN+ E+  AA  LI NP+ +++ L+ ++ GPD P+GG IV   + I ++Y  GRG
Sbjct: 191 TNMAPHNLVEVISAARHLIANPDATLDDLMRFVPGPDLPSGGRIV-GLDGIRDAYATGRG 249

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE- 307
            F+ RA+  VE++      +VVTE+PY V   ++IEKI + + AK++  + DI D +   
Sbjct: 250 SFKTRAKVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNAKKLTGISDIVDLTDRK 309

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++       +P+ +++ ++  S ME  F +N   L     PQ + L  +L  ++ H
Sbjct: 310 HGLRLVIELKNGFNPNAVLQQLYRYSPMEDSFGINNVTLVD-GQPQTLGLVQLLTVYVNH 368

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R +V+ RR+ FR+     R+ +++GLLIA ++IDE+I IIR+ D+    +  ++S + LT
Sbjct: 369 RIDVVRRRTVFRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEAAAARARLMSIYDLT 428

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q + IL LRLR L K    +++ E D L  E  +++++L S ++    ++ E+  + E
Sbjct: 429 EIQANYILELRLRQLTKYSRIELEKEQDELRREIAELEAILGSEERLRTLVSDELGAIAE 488

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQ---------------AMIEKEPITVVISNRGW 529
                     RRT   E                            I  +P   +++  G 
Sbjct: 489 EHGTP-----RRTVLLESEAVSPTIAADLALAAGKKGKAVPLALEIADDPCWAILTASGQ 543

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG-- 587
           I    +      A    + D     +       I  +++ G+   L   ++         
Sbjct: 544 IARTSNQEPLAEAGPRTKHDVFTSVVKTSARGEIAAVTSQGRMLRLQVMDMPVLPPMSGL 603

Query: 588 ------EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                    +  + L   + +V     D    L V +++G    V+        R+    
Sbjct: 604 PNLAGGVPAKEFLTLLKGETLVAFAPLDE--VLAVGTAQGVVKRVQPD--YPLNREDWEI 659

Query: 642 LKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
           + +  ++ +  V     D   +  +    +LL F+   +    R   G+       G   
Sbjct: 660 ISLKDKDFVVGVAPAGADDAELVFLTSQAQLLKFAAASVRPQGRTAGGMVGIKLAAGDRV 719

Query: 699 DV--ICFKICEGLTWIDSAGR---------SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                     E    +  AG             +           R   G    +   
Sbjct: 720 LFFGAVQPKDEAAVVVTIAGTTGALPGTAPGTAKVTAFSEYPAKGRATAGVRAHRFLK 777


>gi|87123344|ref|ZP_01079195.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9917]
 gi|86169064|gb|EAQ70320.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9917]
          Length = 831

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 224/770 (29%), Positives = 371/770 (48%), Gaps = 49/770 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   +L  + +D VDF   ++    EP V P++ P LL NG +GIAVGMAT+
Sbjct: 121 TETRLAPIAHQGLLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCAGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A +AL+  PE+S +KLL  I GPDFPTGG ++     + E+Y  GRG  
Sbjct: 181 IPPHNLGEVVDALVALVRQPELSDDKLLTLIPGPDFPTGGEVLLG-SGVRETYLSGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV  G        +V+TE+P+Q+ K+  IEK+AE +   RI  + DIRDES
Sbjct: 240 PMRGVAHIEEVQPGKGRHKRNAVVITELPFQLSKAGWIEKLAEQVNEGRIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R  DP  ++  +   + +++ F   +  L     PQ + L  +L+ +L
Sbjct: 300 DRDGMRVVVELRRDSDPGKVLADLQRRTSLQSNFGAILLALV-NGQPQQLSLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            +R + L RR+S  ++  + R+E+++GL  A   + ++I++I+            +    
Sbjct: 359 EYREQTLIRRTSHALRKTEDRLEVVEGLNRALEALQQVISMIQEARDAASARASLMVHLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ E + L  E+ ++  LL         +  E++++
Sbjct: 419 LSERQADAVLAMPLRRLTGLEQESLRKEAEELRQERSRLQRLLEQRDVLLAALVDELKQL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-------------KEPITVVISNRGW 529
           ++ F+       RRT   E      A    +                     ++I   G 
Sbjct: 479 RKRFATP-----RRTRLIEGGDHLLAERAASQRPNAELQRKQALGALPGDARLLIQADGQ 533

Query: 530 IRSLKSHSVDLSALHF-----KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           ++ +    +    L        E    ++ L      R+L L+  G+   +        +
Sbjct: 534 VKVISPQVLGRMHLQDAAALGDEPSPARLILPIAPPPRLLALTAQGRVALVR-WEFAGQQ 592

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCK--------LLVVSSKGNAFIVEESEIIANTR 636
                  L   +   + ++       T          L ++SS G    +   ++   + 
Sbjct: 593 PGALERFLPTAME-GETVINLLQLPDTDDDHASRTLSLGLLSSDGRFKRLPLQDLQELSG 651

Query: 637 KGKTFLKVSSEEKM-KLVVKVTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKG-VRLQS 691
           +  + LK+     +   V+   G  +A+V +  ++L   +D   +P M +  +G V L+ 
Sbjct: 652 RAASVLKLKEGVSLQAGVICSEGGTIALVTDIGRVLRLPVDDTALPLMGKLAQGPVALRL 711

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                +   +          I +  +            L  RG +G L  
Sbjct: 712 LPGEQLVGAVSLAADAPGQLIAATRQGRLIRRPLGDLRLCHRGDLGDLAI 761


>gi|223984217|ref|ZP_03634365.1| hypothetical protein HOLDEFILI_01658 [Holdemania filiformis DSM
           12042]
 gi|223963832|gb|EEF68196.1| hypothetical protein HOLDEFILI_01658 [Holdemania filiformis DSM
           12042]
          Length = 849

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 223/736 (30%), Positives = 379/736 (51%), Gaps = 23/736 (3%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L   + ER+  Y+   I+ERA+PD RDG KPV RRI++AM   G  F    +KSA+ VG
Sbjct: 19  PLEEIMGERFGRYSKYIIQERALPDARDGLKPVQRRILYAMFHDGNTFDHQHRKSAKTVG 78

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            VIG  HPHGD SVYD++VR++Q +  R PLI   GN G+ID D AAA RYTEAR+ ++A
Sbjct: 79  LVIGNYHPHGDSSVYDAMVRMSQDWKIRMPLIDMHGNNGSIDDDPAAAMRYTEARLAKIA 138

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L+ +D+D V F   +++ ++EP V P++FP LL NG +GIA G AT+IP HN+ E+ 
Sbjct: 139 GTLLEDIDKDTVLFAPNFDDTENEPTVLPARFPVLLVNGATGIAAGYATNIPPHNLSEVI 198

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +  P+ S+E+L+E + GPDFPTGG IV  ++ IV+++  G+G   +RAR  +  
Sbjct: 199 DAAIYRMQRPKCSLEELMEILPGPDFPTGG-IVMGKKGIVDAFTTGKGRVVIRARTEIVT 257

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  I++ EIPY+V KS ++ K+ ++ +++ I  + DIRDE+      ++    +  
Sbjct: 258 GK-TCNQIIIREIPYEVIKSSMVRKMDDIRLSREIEGIMDIRDETDRTGLRIVIDVKKDA 316

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           DP++++   +  +D++  +  NM  +   + P  M L G+L  ++AHR EV+ RRS +  
Sbjct: 317 DPNVILNYFYKNTDLQIYYSYNMVSIV-NKRPVQMGLIGMLDAFIAHREEVVLRRSRYLY 375

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLR 437
             ++ R  IL+GL+ A   +DE+IA+IR          +    F  +E Q +AI+ LRL 
Sbjct: 376 NKMEERCHILEGLMKAVSIMDEVIAVIRQSKDKGDAKRNLTESFGFSETQAEAIVTLRLY 435

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L   +   ++ E   L+ E E + ++L S     + +  E+RE+K+ ++        R 
Sbjct: 436 RLTSTDIVALREEFAQLVNEMEMLKTILESETVLKSVLIKELREIKKEYADP------RR 489

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF---KEGDSLKIA 554
           +  +    +    + AMI  E + +  S  G+++ +   S   S       KEGD L   
Sbjct: 490 SEIQAEVEEIVIDKTAMIPNERVMITASRDGYVKRVSLRSYGASDNAMTGLKEGDVLVGQ 549

Query: 555 LHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YD 609
           L   T D +LL ++ G    LP    +    +  G  +   + ++ +  I+ A V   + 
Sbjct: 550 LEVDTLDTLLLFTSKGNYAHLPVYQIDEAKWKDVGSHLNKYVSIDGDDKIINAIVVKNFS 609

Query: 610 STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGEN 667
           S   ++ VS +G       S+  +    K  T + +  +++M     V   + + ++  +
Sbjct: 610 SYAWIVTVSRRGQVKKTPISQWQVQRNNKMMTAMNLKKDDEMMRAFVVYAHEDLIMISRS 669

Query: 668 RKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
             +  +S D +P    + +GV+  +          C    E  +    + +   +     
Sbjct: 670 GWISRYSSDLVPANGTKSQGVKALNLAKDDTLAAACSYSDERQSLWVLSDKGNMKRIKMS 729

Query: 727 LGWLGKRGGVGSLVPK 742
              +  R   G +V K
Sbjct: 730 DINVTGRPVKGEIVVK 745


>gi|301320529|gb|ADK69172.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 898

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 222/758 (29%), Positives = 399/758 (52%), Gaps = 36/758 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+     +  +    L   L  R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ 
Sbjct: 1   MSD-----KSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLN 55

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L F   +KKSAR+VGEVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDS
Sbjct: 56  LTFDKPYKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDS 115

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T+++ L+L+ ++++ V F   +++ ++EP V PS FPN+L NG +GIA 
Sbjct: 116 AAAMRYTEARLTKISNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAA 175

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT++P HN+ EI +A + +I NP I+I+++L+ + GPDFPTG  I+++++ I E++  
Sbjct: 176 GYATNMPPHNLSEIIDATINIIKNPNITIDQILKIVKGPDFPTGA-IIQNKQGIREAFLT 234

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   + ++W  E+       IV+ EIPY+V K  L++KI ++I       +++IRDE+
Sbjct: 235 GKGKVIISSKWHQEKNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDET 289

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++   N   + + + + +F  + +   +  N  ++   + P+ + L  I+K ++
Sbjct: 290 DRKGLRIVIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVD-KQPKQLGLIDIIKAYI 348

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
           +H +EV  +R+ F +   + R+EI+ GL+ A   +DE+I +IR  +        +V  F 
Sbjct: 349 SHYKEVFIKRTEFNLNKANLRLEIVNGLIKALSILDEVIKVIRKSENRLDAINNLVITFK 408

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T NQ  AI+++RL  L   +  ++  E   L+ + +K   +LN+     N+I   + E 
Sbjct: 409 FTTNQATAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNNSLVLDNEIISRLEEA 468

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ F        +R +  E    D    Q+ +I ++ I + IS  G+I+ + ++ ++ + 
Sbjct: 469 KKQFG------IKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNE 522

Query: 543 ---LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLN 597
                 K  D           D ++L+S     Y++P         +  G  I  +    
Sbjct: 523 LSSFGKKPNDMWISQGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQ 582

Query: 598 HNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
            N+ I+ A V       T  LL+VS  G     + S++      K    +K+S ++ +  
Sbjct: 583 PNETIINALVIKEFINSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVY 642

Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
              ++    +  ++ +N   + ++I+ IP  S   KGV+  + KD  I   +  +  + +
Sbjct: 643 ADLISSKTSYCCIITKNGYAVRYNIEDIPVQSTISKGVKAANLKDDYIISALSLQNNKDV 702

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               +        +N +  ++  R   G  +     ++
Sbjct: 703 LIFTNKNNYKRLDQNLIPIYI--RPKKGIRILVEKKKN 738


>gi|283768326|ref|ZP_06341238.1| DNA topoisomerase IV, A subunit [Bulleidia extructa W1219]
 gi|283104718|gb|EFC06090.1| DNA topoisomerase IV, A subunit [Bulleidia extructa W1219]
          Length = 830

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 221/745 (29%), Positives = 380/745 (51%), Gaps = 26/745 (3%)

Query: 6   ISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++     V+        L   +   +  YA   I+ERA+PD+RDG KPV RRI++AM   
Sbjct: 1   MTKKKEWVDHTRYLNQRLEDIMGAGFGRYAKYIIQERALPDVRDGLKPVQRRILYAMYND 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      ++KSA+ VG VIG  HPHGD SVYD++VR++Q +  R P I   GN G+ID D
Sbjct: 61  GNTHDKPYRKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQDWKVRMPFIDMHGNNGSIDDD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR+ +V +++ + +D+D V+    +++ D EP V P  FP +L NG +GIA
Sbjct: 121 PAAAMRYTEARLAKVTQVMEEDLDKDTVEMSPNFDDTDIEPTVLPVSFPVMLVNGATGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
            G AT++P HN+ E+ +A +  I N E S+  +++ + GPDFPTGG IV+  E I E++ 
Sbjct: 181 AGYATNMPPHNINEVIDATIYRIQNAECSLNDVMDILPGPDFPTGG-IVQGEEGIREAFT 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VRA+  + +       IV+TEIPY+V K  L++K+ E+ I++ +  L D+RDE
Sbjct: 240 TGKGRIVVRAKTEIIQEK-NLQQIVITEIPYEVVKGNLVKKMDEIRISREVDGLIDVRDE 298

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    + +D +L+++  F  +D++  +    NV  M   P  + L G+L  +
Sbjct: 299 SDRNGLRIVIDVRKDVDANLILQYFFKNTDLQVYYNY-NNVAIMRERPVQVGLLGLLDAF 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421
           +  R+EV+ RRS F +  ++ RV I++GL+ A   +DE+IAIIR               F
Sbjct: 358 IDFRKEVVLRRSRFELNKMEARVHIIEGLIKAVSVLDEVIAIIRASKDKADAKFRLIENF 417

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              E Q +AI+ LRL  L   +   +++E   L+ + E+  S+L +     + +  E+R+
Sbjct: 418 GFDEVQAEAIVTLRLYRLSNTDIVSLRNEFAQLVNQIEETKSILENESVLRHLMVQELRQ 477

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL- 540
           VKE +  +      R T  E    +    ++AMI  E + + +S  G+++ +   S +  
Sbjct: 478 VKENYGDA------RRTKIEAKIDEINISKEAMIPSEQVMITVSKDGYLKRVSLRSFNAV 531

Query: 541 --SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDL 596
                  K GD L      +T D +LL ++ G    +P    +    +  G  +  L+ +
Sbjct: 532 RDQETGLKTGDQLIGQREVNTLDTLLLFTSKGNYAMVPVWQIDDEKWKEIGSHLNKLVRV 591

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKL 652
           +  + +++A V   +DS   + +V+        + S+  +  T +    + +  ++++  
Sbjct: 592 DSEEKVISAIVVKNFDSYAWITLVTKGNKIKKTKLSDWKVERTSRLFKAINLEEKDEVCA 651

Query: 653 VVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-DGGISDVICFKICEGLT 710
                    V VV ++   L  S DQIPE+   KGV+      +  ++        + L 
Sbjct: 652 AFMTYQSQEVLVVTKDGYALRMSQDQIPEVKASKGVQAMKVAFEDEVAFATSVYSSDNLL 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGG 735
           ++    ++  +  +     L  R  
Sbjct: 712 FLTDTLQA--KRIHLEDLRLSGRAK 734


>gi|331703510|ref|YP_004400197.1| Topoisomerase IV subunit A [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802065|emb|CBW54219.1| Topoisomerase IV subunit A [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 898

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 223/758 (29%), Positives = 401/758 (52%), Gaps = 36/758 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+     +  +    L   L  R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ 
Sbjct: 1   MSD-----KSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLN 55

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L F   +KKSAR+VGEVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDS
Sbjct: 56  LTFDKPYKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDS 115

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T+++ L+L+ ++++ V F   +++ ++EP V PS FPN+L NG +GIA 
Sbjct: 116 AAAMRYTEARLTKISNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAA 175

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT++P HN+ EI +A + +I NP I+I+++L+ + GPDFPTG  I+++++ I E++  
Sbjct: 176 GYATNMPPHNLSEIIDATINIIKNPNITIDQILKIVKGPDFPTGA-IIQNKQGIREAFLT 234

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   + ++W  E+       IV+ EIPY+V K  L++KI ++I       +++IRDE+
Sbjct: 235 GKGKVIISSKWHQEKNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDET 289

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++   N   + + + + +F  + +   +  N  ++   + P+ + L  I+K ++
Sbjct: 290 DRKGLRIVIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVD-KQPKQLGLIDIIKAYI 348

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
           +H +EV  +R+ F +   + R+EI+ GL+ A   +DE+I +IR  +        +V  F+
Sbjct: 349 SHYKEVFIKRTEFNLNKANLRLEIVNGLIKALAILDEVIKVIRKSENRIDAINNLVKTFN 408

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T NQ  AI+++RL  L   +  ++  E   L+ + +K   +LN+     N+I   + EV
Sbjct: 409 FTTNQSTAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNNNLVLDNEIISRLEEV 468

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ F        +R +  E    D    Q+ +I ++ I + IS  G+I+ + ++ ++ + 
Sbjct: 469 KKQFG------IKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNE 522

Query: 543 ---LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLN 597
                 K  D           D ++L+S     Y++P         +  G  I  +    
Sbjct: 523 LSSFGKKPNDMWIGQGVCSNLDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVATTQ 582

Query: 598 HNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
            N+ I+ AF+       T  LL+VS  G     + S++      K    +K+S ++ +  
Sbjct: 583 PNETIINAFIIKEFINSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVY 642

Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
              ++    +  ++ +N   + ++I+ IP  S   KGV+  + KD  I   +     + +
Sbjct: 643 ADLISSKTSYCCIITKNGYAVRYNIEDIPVQSTISKGVKAANLKDDHIISALSLDNNKDV 702

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               +        +N +  ++  R   G  +     ++
Sbjct: 703 LIFTNKNNYKRLDQNLIPIYI--RPKKGIRILVEKKKN 738


>gi|42561046|ref|NP_975497.1| topoisomerase IV subunit A [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|42492543|emb|CAE77139.1| TOPOISOMERASE IV SUBUNIT A [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
          Length = 898

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 222/758 (29%), Positives = 399/758 (52%), Gaps = 36/758 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+     +  +    L   L  R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ 
Sbjct: 1   MSD-----KSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLN 55

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L F   +KKSAR+VGEVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDS
Sbjct: 56  LTFDKPYKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDS 115

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T+++ L+L+ ++++ V F   +++ ++EP V PS FPN+L NG +GIA 
Sbjct: 116 AAAMRYTEARLTKISNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAA 175

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT++P HN+ EI +A + +I NP I+I+++L+ + GPDFPTG  I+++++ I E++  
Sbjct: 176 GYATNMPPHNLSEIIDATINIIKNPNITIDQILKIVKGPDFPTGA-IIQNKQGIREAFLT 234

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   + ++W  E+       IV+ EIPY+V K  L++KI ++I       +++IRDE+
Sbjct: 235 GKGKVIISSKWHQEKNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNSNLGIKEIRDET 289

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++   N   + + + + +F  + +   +  N  ++   + P+ + L  I+K ++
Sbjct: 290 DRKGLRIVIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVD-KQPKQLGLIDIIKAYI 348

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
           +H +EV  +R+ F +   + R+EI+ GL+ A   +DE+I +IR  +        +V  F 
Sbjct: 349 SHYKEVFIKRTEFNLNKANLRLEIVNGLIKALSILDEVIKVIRKSENRLDAINNLVITFK 408

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T NQ  AI+++RL  L   +  ++  E   L+ + +K   +LN+     N+I   + E 
Sbjct: 409 FTTNQATAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNNSLVLDNEIISRLEEA 468

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ F        +R +  E    D    Q+ +I ++ I + IS  G+I+ + ++ ++ + 
Sbjct: 469 KKQFG------IKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNE 522

Query: 543 ---LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLN 597
                 K  D           D ++L+S     Y++P         +  G  I  +    
Sbjct: 523 LSSFGKKPNDMWISQGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQ 582

Query: 598 HNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
            N+ I+ A V       T  LL+VS  G     + S++      K    +K+S ++ +  
Sbjct: 583 PNETIINALVIKEFINSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVY 642

Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
              ++    +  ++ +N   + ++I+ IP  S   KGV+  + KD  I   +  +  + +
Sbjct: 643 ADLISSKTSYCCIITKNGYAVRYNIEDIPVQSTISKGVKAANLKDDYIISALSLQNNKDV 702

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               +        +N +  ++  R   G  +     ++
Sbjct: 703 LIFTNKNNYKRLDQNLIPIYI--RPKKGIRILVEKKKN 738


>gi|120610029|ref|YP_969707.1| DNA topoisomerase IV subunit A [Acidovorax citrulli AAC00-1]
 gi|120588493|gb|ABM31933.1| DNA topoisomerase IV subunit A [Acidovorax citrulli AAC00-1]
          Length = 785

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 276/782 (35%), Positives = 410/782 (52%), Gaps = 61/782 (7%)

Query: 6   ISNSNTLVEENVKAVS-----LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +S+++    +  +  S     L    +  YL YALS +K RA+PD+ DG KPV RRI+ A
Sbjct: 1   MSDNDQPTLDFSQPESGDHLGLAGYAQRAYLEYALSVVKGRALPDVCDGMKPVQRRILFA 60

Query: 61  MSEMGLDFGAAFK-------KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           M  MGL +G   +       KSAR+VG+V+G+ HPHGDQS YD+LVRLAQ F QRYPLI 
Sbjct: 61  MERMGLAYGGPTRNVPAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLID 120

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG+ DGD AAA RYTEAR+T++A L+L  +D+  VDF   Y+    EP   P++ P
Sbjct: 121 GQGNFGSRDGDGAAAMRYTEARLTRIASLLLDEIDQGTVDFVPNYDGSTEEPRQLPARLP 180

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
             L NG SGIAVG+AT IPSHN++EI +A +AL+ NP+++ E+L   + GPD+P GG I+
Sbjct: 181 FALLNGASGIAVGLATEIPSHNLREIADACVALVKNPKLADEELAALVPGPDYPGGGQII 240

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
            S   I ++YR GRG  +VRARW +E++ RG W +VVTE+P  V   +++E+I EL   K
Sbjct: 241 SSPGDIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPK 300

Query: 294 RIPLLEDIRDE--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
                + +  E                        VRIV  PK   +    L+ ++   +
Sbjct: 301 VKAGKKALSQEQTQLKATVLGVLDVVRDESSKDAPVRIVFEPKTGRVPQQELITTLLAHT 360

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +ET  P+N+ ++ +   P    L  +L+EW+A R++ + RRS  R+  +  R+ IL+G 
Sbjct: 361 SLETSAPINLTMVGLDGKPVQKSLRRMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGR 420

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
               LNIDE+IAIIR  D+PK  ++ RF L++ Q + IL +RLR L +LE  +I+ EL  
Sbjct: 421 QTVLLNIDEVIAIIRASDEPKAALIERFRLSDRQAEDILEIRLRQLARLEAIKIEQELKE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E+ K++ +L +       +  EI    + F+ +     RRT      +ADK    + 
Sbjct: 481 LREEQGKLEDILANPASLRRLMVKEIEADAKQFADA-----RRTLI----QADKRATAEV 531

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +  EP+TVV+S +GW+R+ + H  D     FK GD+L       T D ++   ++G+ Y
Sbjct: 532 KVVDEPVTVVVSQKGWVRARQGHGHDAGTFAFKSGDALYGTFECRTVDTLIAFGSNGRVY 591

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
           ++    L   RG G+ I  LIDL      V  F   +   LL+  S G  FI     + A
Sbjct: 592 SVAVSQLPGARGDGQPITTLIDLEAGTQPVHYFAGPANAALLLAGSGGYGFIAAVEHMTA 651

Query: 634 NTRKGKTFLKVSSEEKMKL---VVKVTGD-------HVAVVGENRKLLIFSIDQIPEMSR 683
             R GK F+ +   E++         +G        HV       ++L F I ++ +M+ 
Sbjct: 652 RNRGGKAFVSLGEGEQLCRPSHAAFTSGSQPLAPATHVCCASAGGRILTFEITELKQMAN 711

Query: 684 -GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK-----RGGV 736
            G+G+ L        ++    +        I   GR     +  L           RG  
Sbjct: 712 GGRGLMLIDLEPKDTLAGAAAYTRS---VRIAGVGRGGKERDETLEIRSLNNARFPRGRK 768

Query: 737 GS 738
           G 
Sbjct: 769 GK 770


>gi|121604108|ref|YP_981437.1| DNA topoisomerase IV subunit A [Polaromonas naphthalenivorans CJ2]
 gi|120593077|gb|ABM36516.1| DNA topoisomerase IV subunit A [Polaromonas naphthalenivorans CJ2]
          Length = 784

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 278/772 (36%), Positives = 417/772 (54%), Gaps = 56/772 (7%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA-------FK 73
           SL    +  YL YALS +K RA+PD+ DG KPV RRI+++M+ MGL FG           
Sbjct: 20  SLAAYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMARMGLAFGGPNGATGARPV 79

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+G+ HPHGDQ+ YD+LVR+AQ F QRYPLI GQGNFG+ DGD AAA RYTE
Sbjct: 80  KCARVVGDVLGRFHPHGDQAAYDALVRMAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTE 139

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++  L++  +DE  VDF   Y+    EP   P++ P  L NG SGIAVG+AT IPS
Sbjct: 140 ARLARITTLLMDEIDEGTVDFIPNYDGSTEEPRQLPARLPFTLLNGASGIAVGLATEIPS 199

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +A +ALI  P++S E+L   I GPD+P GG I+ S   I  +YR GRG  +VR
Sbjct: 200 HNLREVADACVALIKTPKLSDEELYTLIAGPDYPGGGQIISSGAEIAAAYRTGRGSLKVR 259

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---------------- 297
           ARW +EE+ RG W +VV E+P  V   R++E+I E+   K                    
Sbjct: 260 ARWKIEELARGQWQLVVQELPPGVSTQRVLEEIEEITNPKIKLGKKALSLDQVQLKQSML 319

Query: 298 --LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
             L+ +RDES     VR+V  PK        L+ ++   + +E+  P+NM ++ +   P 
Sbjct: 320 AVLDVVRDESSKDAAVRLVFEPKTSRTAQAELINTLLSHTSLESSSPINMTMIGLDGRPT 379

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              L  +L EW+A R+  + +RS  R+  +  R+ IL+G     LNIDE+IAIIR  D+P
Sbjct: 380 QKSLRQMLNEWIAFRQTTIEKRSQHRLDKVLARIHILEGRQTVLLNIDEVIAIIRQSDEP 439

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           K  +++RFSL++ Q + IL +RLR L +LE  +I+ EL  L  E+ +++ +L +      
Sbjct: 440 KSALIARFSLSDRQAEDILEIRLRQLARLEAIKIEQELKTLREEQGRLEDILGNPTALRR 499

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            +  EI    + F+       RRT      +A+K ++ +  +  EP+TVV+S++GW+R+ 
Sbjct: 500 LMIKEIEADAKQFADP-----RRTLI----QAEKKSVLEVKVLDEPVTVVVSSKGWVRAR 550

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
             H    S+  FK GD+L       T D +L   ++G+ Y++P   L   RG G+ +  L
Sbjct: 551 GGHGHAPSSFAFKAGDALYGTFECRTVDTLLAFGSNGRLYSVPVAMLPGARGDGQPVTTL 610

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           IDL     ++  F   ++  LL+ SS G  F+     +++  R GK F+ ++  E +   
Sbjct: 611 IDLESGTQLLHYFAGPASAMLLLSSSGGYGFLATVENMVSRNRSGKAFITLAEGETLCRP 670

Query: 654 VKVTG----------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVI 701
             V+G           HVA     +++L F I +I +M + G+G+ L   +D   ++   
Sbjct: 671 SHVSGASGSQPLPPATHVACASTGQRILTFDIGEIKQMEKGGRGLMLIDLEDKDTLAGAA 730

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVGSLVPKGFPRSG 748
            +        I+  GR     E  L           R   G     GF  +G
Sbjct: 731 AYTRS---VRIEGIGRGAKPREETLEIRSLNNARTVRARKGKSADLGFKPTG 779


>gi|255320340|ref|ZP_05361524.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82]
 gi|262379375|ref|ZP_06072531.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164]
 gi|255302535|gb|EET81768.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82]
 gi|262298832|gb|EEY86745.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164]
          Length = 985

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 240/825 (29%), Positives = 387/825 (46%), Gaps = 105/825 (12%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM ++   IL  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGAAGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  DN  IS+E L+EYI GPDFPTGG I+  +  IV++YR G+G   
Sbjct: 181 APHNMTEVVNACLAYADNTNISVEGLMEYISGPDFPTGG-IIYGKSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +R ++  EE    G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES +D  
Sbjct: 240 IRGKYHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R  + ++++ ++F+ + +E  F +NM  L     P++M L  I+  ++ HR+E
Sbjct: 300 RIAIDLKRGENAEVVVNNLFLNTQLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------- 417
           V+ RR+ + ++    R  IL+GL +A  NID+II  I+    P                 
Sbjct: 359 VVTRRTMYELRKARERGHILEGLTVALANIDDIIDAIKTSANPAEARERLLAADWAAGGV 418

Query: 418 -----------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                           + L+  QV AIL LRL  L  LE+ ++ 
Sbjct: 419 GAMLERAGSVSIRPDEIEGEDPSRPFGLDRDIYRLSPTQVAAILELRLNRLTGLEQDKLH 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   +L +  ++ ++LN        I  E+  V + +  +     RRT   E   +   
Sbjct: 479 AEYSEILGQITELTAILNDFNLLMAVIKEELVLVLQQYGDA-----RRTEIVE---SRID 530

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTT 560
             ++ +I +E + + +S  G+ ++                SA   KE D ++  +     
Sbjct: 531 FSREDLIPEEQVVLTVSQSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDFIQHLIVTSNH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL--- 615
             +L  +  GK Y L    +        G  +  L+ L+ N+ I          K     
Sbjct: 591 ATVLCFTNVGKVYRLRVFEVPQASRGSRGRPMINLLPLDANETITAILPVIDAPKKFTER 650

Query: 616 VVSSKGNAFIVEE--------------------------SEIIANTRKGKTFLKV----- 644
           + + K                                   E+ A  R     L V     
Sbjct: 651 LAAFKNFVKTNTVKLQDNPVISVHLPELETALAMLDDNADELSAELRTQLKQLCVELAVT 710

Query: 645 SSEEKMKLVVKVTGD------HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
             ++++ +      +      +V +   +  +    ++Q   + R  G+R     +    
Sbjct: 711 DLDDEIIIEFAQQAESVRKNYYVFMATASGTVKRVELEQFSNV-RSNGLRAIELNEEDTL 769

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             +     E    + S          +       R   G    + 
Sbjct: 770 IGVTITDGEQQIMLFSNE-GKAIRFAETDVRAMGRSAKGVRGMRV 813



 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 25/166 (15%)

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLL 671
            + + ++ G    VE  +       G   ++++ E+ +  V    G+  + +     K +
Sbjct: 732 YVFMATASGTVKRVELEQFSNVRSNGLRAIELNEEDTLIGVTITDGEQQIMLFSNEGKAI 791

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISD-----------------------VICFKICE 707
            F+   +  M R  KGVR         ++                       V    + E
Sbjct: 792 RFAETDVRAMGRSAKGVRGMRVALAAQAEDTEDTDTDSEDEDSSDSNVVSRIVSLVVVPE 851

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 852 TGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGA 897



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT 657
            IV+  V   T ++L  S+ G        +     R GK  + + + E   ++   V + 
Sbjct: 842 RIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAID 901

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICF 703
               + ++ +   L+     ++ +  R  +GVRL    +G  +  V+  
Sbjct: 902 ETKELMLISDGGTLVRTRAAEVAQTGRNAQGVRLIRLGEGETLVGVVSI 950


>gi|320093842|ref|ZP_08025685.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979231|gb|EFW10731.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 821

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 222/792 (28%), Positives = 375/792 (47%), Gaps = 46/792 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +        +EN+  + +   +   +L YA+S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MAKKDQVVDVPEADENISEIDVSAEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILYQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MGL       KS R+VGEV+GKLHPHGD ++Y++LVRLAQPF  R PL+ G GNFG+
Sbjct: 61  MDQMGLRPDRGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRLPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEARM   A  ++ G+ ED VDF   Y+ + ++P V P+ FP LL NG 
Sbjct: 121 LD-DGPAAARYTEARMAPAAVDLVTGLGEDTVDFVPNYDNQFTQPEVLPAAFPQLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+I  HN+ E    A+ L+D+P+ ++  L+ ++ GPD P GG ++   E + 
Sbjct: 180 SGIAVGMATNIAPHNLAETIAGAVHLLDHPDATVADLMRFVPGPDLPEGG-VIVGLEGVK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y  GRG F+ RA+  VE V      ++VT++PY V   ++IEKI E + A R+  +  
Sbjct: 239 EAYETGRGAFKTRAKVSVERVTARKMGLIVTQLPYMVGPEKVIEKIKENVGAGRLKGISS 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +++ +       ++       +P+ +++ ++  + +E  F +N   L  G  PQVM L  
Sbjct: 299 VQNLTDRIHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALV-GGQPQVMGLKQ 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           IL+ ++ HR +V  RRS FR+   + R+ +++GLLIA L+ID++IAIIR+ D     +  
Sbjct: 358 ILRVFVDHRLDVTTRRSRFRLGKCEERLHLVEGLLIAILDIDDVIAIIRSSDDADVARER 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++ F L++ Q D IL LRLR L K    ++++E D L A   ++  +L S +     + 
Sbjct: 418 LMTAFDLSQAQADYILELRLRRLTKFSRIELEAERDELAARIAELREVLESPELLRALVK 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRA-------------DKATLQQAMIEKEPITVV 523
            E+ EV E            ++   V                      +  I  +P  VV
Sbjct: 478 RELAEVSERLGTPRRTVLLASSGAPVVGGAGASSLAALPSVPRSGKGLELQIPDDPCQVV 537

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           +S  G +  ++              D  +  L +    ++ +++ DG A+ +   +L + 
Sbjct: 538 LSATGALARVEGVDPLEPGPR-AAFDGWRAQLPSSVRSQVAVVTEDGVAHRIDVVDLPAL 596

Query: 584 RGHGEAIQLLIDLNHNQ------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
                 + L   +  ++        V     D +    + +++G    +    +    R 
Sbjct: 597 PRFDTGMSLAGAVPASELLHSDSRPVGLLDPDGSAVSAMGTARGTVKRLRPDVL---QRD 653

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
               + +   +++        +  V  +  + +LL    ++I    R   GV       G
Sbjct: 654 EWEVIALDPGDRLIGFAPCPDEADVVFISGDAQLLRTPAERIRPQGRTAGGVAGMRLSPG 713

Query: 696 GISDVICFKICEGLTWIDS----------AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +           + + +           G++  +           RGG G    +   
Sbjct: 714 VEAIGFWVVDAPAESVVVTVAAAEGALPGTGQTTVKVTPFDAYPSKGRGGQGVRAQRFLR 773

Query: 746 RSGKF----LSS 753
              +     + +
Sbjct: 774 GEDRLDVAWVGA 785


>gi|83319790|ref|YP_424430.1| DNA topoisomerase IV, A subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283676|gb|ABC01608.1| DNA topoisomerase IV, A subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 899

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 225/758 (29%), Positives = 401/758 (52%), Gaps = 36/758 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+     +  +    L   L  R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ 
Sbjct: 1   MSD-----KSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLN 55

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L F   +KKSAR+VGEVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDS
Sbjct: 56  LTFDKPYKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDS 115

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T+++ L+L+ +++D V F   +++ ++EP V PS FPN+L NG +GIA 
Sbjct: 116 AAAMRYTEARLTKISNLLLEDLEKDTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAA 175

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT++P HN+ EI +A + +I NP I+I+++L+ + GPDFPTG  I+++++ I E++  
Sbjct: 176 GYATNMPPHNLSEIIDATIDIIKNPNITIDQILKIVKGPDFPTGA-IIQNKQGIREAFLT 234

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   + ++W  E+       IV+ EIPY+V K  L++KI ++I       +++IRDE+
Sbjct: 235 GKGKVIISSKWHQEKNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDET 289

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++   N   + + + + +F  + +   +  N  ++   + P+ + L  I+K ++
Sbjct: 290 DRKGLRIVIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVD-KQPKQLGLIDIIKAYI 348

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
           +H +EV  +R+ F +   + R+EI+KGL+ A   +DE+I +IR  +        +V  F+
Sbjct: 349 SHYKEVFIKRTEFNLNKTNLRLEIVKGLIKALSILDEVIKVIRKSENRIDAINNLVISFN 408

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T NQ  AI+++RL  L   +  ++  E   L+ + +K   +LN      N+I   + EV
Sbjct: 409 FTTNQSTAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNDNLVLDNEIISRLEEV 468

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ F        +R +  E    D    Q+ +I ++ I + IS  G+I+ + ++ ++ + 
Sbjct: 469 KKQFG------IKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNE 522

Query: 543 ---LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLN 597
                 K  D           D ++L+S     Y++P         +  G  I  +    
Sbjct: 523 LSSFGKKPNDMWISQGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQ 582

Query: 598 HNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
            N+ I+ A V       T  LL+V+  G     + S++      K    +K+S ++ +  
Sbjct: 583 PNETIINALVIKEFINSTQHLLLVTKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVY 642

Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
              ++    +  +V +N   + ++I+ IP  S   KGV+  + KD  I   +  +  + +
Sbjct: 643 ADLISSKTSYCCIVTKNGYAVRYNIEDIPIQSTISKGVKAANLKDDQIISALSLQTNKDI 702

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               +        +N +  ++  R   G  +     ++
Sbjct: 703 IIFTNKNNYKKIDQNLIPIYI--RPKKGIRILVEKKKN 738


>gi|296111946|ref|YP_003622328.1| DNA topoisomerase IV subunit A [Leuconostoc kimchii IMSNU 11154]
 gi|295833478|gb|ADG41359.1| DNA topoisomerase IV subunit A [Leuconostoc kimchii IMSNU 11154]
          Length = 812

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 204/752 (27%), Positives = 360/752 (47%), Gaps = 28/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM + G  +   +
Sbjct: 1   MADRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G+ID D AAA RYT
Sbjct: 61  RKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSIDNDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A  ++  + ++ VD    +++   EP V PS+ P+L  NG +GI+ G AT IP
Sbjct: 121 EARLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EI  A   L+D+PE  +  L+ Y+ GPDFPTGG I++  + I ++Y+ GRG   V
Sbjct: 181 PHNLKEINAALTYLLDHPEAPLSTLMRYVKGPDFPTGG-IIQGLDGIKKAYKTGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I VTE+PY+V KS L+ KI  + + K +  + ++RDES  +   +
Sbjct: 240 RAKTAISELKGGKKKIEVTELPYEVVKSNLVSKIDGIRLNKEVAGISEVRDESDREGMSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  + + ++  +F  +D++  +     V    + P  + L   L+ +L  R+EV+
Sbjct: 300 VIELTKDANAEGILTYLFKKTDLQIAYNF-NMVAIHDQRPVHVGLKQGLQAFLGFRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            +RS++ +     R  I++GL+     +D+++A IR     +    +   +F  T+ Q +
Sbjct: 359 LKRSAYELAKAQARQHIVEGLIRMLSILDQVVATIRASKNRRDATQNLITQFQFTQPQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  Q++ E   L A+ +++  ++N      + I  EI  +   +   
Sbjct: 419 AIVTLQLYRLTNTDVTQLEEEFATLAAKIDRLTLIINEASALNDVIRDEITAITTSY--- 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                +R +  E    D        I +E + V++S  G+ +     S   S       D
Sbjct: 476 ---RSQRRSEIEAEVEDLVIDTAVTIAEEDVQVLVSRNGYYKRSSIRSYKASDSDNGLAD 532

Query: 550 SLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH---NQDIVT 604
                     +TT  + + +  G     P   L   +           L++   ++ ++ 
Sbjct: 533 DDMVVFEGQLNTTQHLFMFTNKGNLIYRPVHELPDSKWKDTGEHFSQQLSNWHADEFVIQ 592

Query: 605 AFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV------K 655
           A V    D      +VS+ G       ++++    K KT + +  +     VV       
Sbjct: 593 AAVVDTLDQGGAFTIVSNDGFIKQTTLNDMLPKAYKKKTAMAIKLKTDASYVVNVSYFKA 652

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                V ++  +   L F +  +PE+  R  GV+    +   +     F   +       
Sbjct: 653 TATPEVLLLSHHGIGLRFKLTDVPEIGPRTAGVKAMDLRGDDLIMAALFITDKTQQVAIV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           A     +        + KR   G L+     +
Sbjct: 713 ARNGAFKYMPISEINMSKRANKGLLIF--TQK 742


>gi|227529214|ref|ZP_03959263.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350860|gb|EEJ41151.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 823

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 222/750 (29%), Positives = 388/750 (51%), Gaps = 29/750 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 1   MRDGKIEKMTLEQLMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A + L++NP+ S+EKL+E+I GPDFPTGGII    + I ++Y+ GRG   
Sbjct: 181 PTHNLGEVLDALVYLLNNPDASLEKLMEFIPGPDFPTGGIIQG-IDGIRKAYQTGRGRIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRAR  +E +  G   I VTEIPY+V K++L+++I +L +AK++  + + RDE+      
Sbjct: 240 VRARTEIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R  +   ++  +   +D++  +  NM  +   R P  + L  IL  +L+ ++++
Sbjct: 300 IAIELKRGANAQGILNYLLKNTDLQINYNFNMVAIDEQR-PMRVGLKRILISYLSFQKQI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F +     R+ I++GL+ A   +D++I  IR        K  ++++++ +  Q 
Sbjct: 359 IRRRTQFNLNNAQHRLHIVEGLIKALSILDQVIKTIRGSKNRKDAKENLINQYAFSAEQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +  ++K E   L  + E+   +L + ++  N +  E+  +K+ F  
Sbjct: 419 EAIVTLQLYRLTNTDVTELKDEQKKLNQQIEEFQLILTNDQELANVLRREMLAIKKEFGN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHF 545
                  R T  E          +  + KE + +++S+ G+I+     S     +     
Sbjct: 479 P------RRTKIESHVEKLRVDTKVTVAKEDVILLVSHAGYIKRSSVRSFKASPIDENGL 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           +E D   +    +T   + + +  G     P   +     +  GE I   I L  N+ I+
Sbjct: 533 REDDYPILIQQTNTLAHLFMFTNLGNVIYRPVHEITDARWKDTGEHISQTIGLAENEHII 592

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEI---IANTRKGKTFLKVSSEE-KMKLV--- 653
            A V+   D    +++ +S G       ++         +  T +K+ S+E ++  V   
Sbjct: 593 KAMVFDKLDQPGTIIMGTSDGQIKQSAFTDYKPGSRYKSRTTTGIKLKSDEARLVSVDYY 652

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTW 711
                +  + V+      + F +  +P    R  GVR  + KD   +      + EG   
Sbjct: 653 EPTNENRSLLVISHEGYAVRFDVADVPVTGLRTGGVRAINLKDDDYATDYTL-VSEGQNL 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                R   +         G R   G LV 
Sbjct: 712 AMITQRGAFKEMASSEIETGARARRGELVI 741


>gi|320528086|ref|ZP_08029251.1| DNA topoisomerase IV, A subunit [Solobacterium moorei F0204]
 gi|320131434|gb|EFW23999.1| DNA topoisomerase IV, A subunit [Solobacterium moorei F0204]
          Length = 835

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 215/761 (28%), Positives = 382/761 (50%), Gaps = 24/761 (3%)

Query: 6   ISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +    T+V+    +   L   +   +  YA   I+ERA+PD RDG KPV RRI++AM   
Sbjct: 1   MVKKKTIVDNTKYRPELLEDIMGAGFGRYAKYIIQERALPDARDGLKPVQRRILYAMYHD 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G  +  A++KSA+ VG VIG  HPHGD SVYD++VR++Q +  R PLI   GN G+ID D
Sbjct: 61  GNTWDYAYRKSAKTVGLVIGNYHPHGDTSVYDAMVRMSQDWKVRLPLIDMHGNNGSIDDD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR+ +V +++ + +D++ V+    +++ + EP V P  FP +L NG +GIA
Sbjct: 121 PAAAMRYTEARLAKVTQVMEEDLDKNTVEMAPNFDDTEHEPTVLPVPFPVMLVNGATGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
            G AT++P HN+ E+ +A +  I NPE ++  +++ + GPDFPTGG IV+    I +++ 
Sbjct: 181 AGYATNMPPHNLNEVVDATIYRIQNPESALTDVMDILTGPDFPTGG-IVQGEAGIRDAFT 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VR++  + E       I++TEIPY+V K +L++K+ E+ ++K I  + D+RDE
Sbjct: 240 TGKGRIVVRSKCEIHEEKS-CQQIIITEIPYEVVKGQLVKKMDEIRVSKDIDGILDVRDE 298

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    + +D ++++   +  +D++  +  N   +   + P  + L G+L  +
Sbjct: 299 SDREGLRIVVDVRKDIDANMILNYFYKNTDLQVYYNYNNVAIID-KRPVQVGLLGLLDAF 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRF 421
           +A R+EV+ RRS + +  ++ R  I++GL+ A   +DE+I IIR           +++ F
Sbjct: 358 IAFRKEVVLRRSRYELDKMEARCHIIEGLMKAVSILDEVIRIIRASQDKGDAKRNLMNEF 417

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              E Q +AI++LRL  L   +   ++ E   L+ + E+  +++ +     + I  E+R 
Sbjct: 418 GFDEPQSEAIVSLRLYRLSNTDIITLREEFAELVNQIEETKAIIENENVLHSVIIKELRN 477

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--- 538
           VK+ + +       R T  E    +    + AMI  E + V +S  G+++ +   S    
Sbjct: 478 VKKEYGQE------RRTRIEAEVEEINYDKTAMIANERVVVTVSRDGYLKRVSMRSYNAV 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDL 596
                  K+GD L       T D +LL ++ G   ++P    +    +  G  +  ++ +
Sbjct: 532 GDQETSIKDGDVLIGTTECDTLDTLLLFTSKGNYASIPVWQIDEGKWKDVGMHLNKVVRI 591

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKL 652
           +    I  A     +D+   ++ VSS G       +   +    K  T + +S + +M  
Sbjct: 592 DGEDKIKNAILIKSFDTYAWIVTVSSAGQIKKTPVNNWQVERNNKVMTAMNLSKDAEMIH 651

Query: 653 VVKV-TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710
                    + +V ++     F+I+ IP    + KGV+  +   G      C    E   
Sbjct: 652 AFIAYRNQQILMVSKDGYSYRFAIEDIPATGVKSKGVKAMNLGKGDKLAWGCVMNAEDPA 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +        +  +      G R   G+L+ K    +   +
Sbjct: 712 VLYMTNVGQMKRIHTEEIVFGNRPMKGNLICKRLKTNPSIV 752


>gi|291550230|emb|CBL26492.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus torques L2-14]
          Length = 746

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 214/761 (28%), Positives = 382/761 (50%), Gaps = 53/761 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   +
Sbjct: 3   NESQIIRTEYSDLMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+YDSLV +AQ F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 63  RKSARIVGDTMGKYHPHGDSSIYDSLVVMAQDFKKGQVLVDGHGNFGSIEGDGAAAMRYT 122

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+T+  + + L  +D++ +DF   ++E + EP+V P + PNLL NG  GIAVGMATSI
Sbjct: 123 EARLTKFTQEVCLADLDKNVIDFGPNFDETEKEPLVLPMRVPNLLINGAEGIAVGMATSI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A  A + N +I+ ++L++YI GPDFPTGGI+V +++ +   Y  G+G  +
Sbjct: 183 PTHNLCEVVDAVKAYMKNDKITTKQLMKYIKGPDFPTGGIVV-NKDDLPAIYESGQGKIK 241

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R +  VEE+  G   +V+TEIPY +  +   + +  +  L+ +K+   + DI ++S+++
Sbjct: 242 LRGKVEVEELKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVESKKTTDIVDISNQSSKE 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  D + L   ++  + +E  F +   +      P+ + L  I++  +  +
Sbjct: 302 GIRIVIELKRGADVENLKNMLYKKTRLEDTFGV-NMLAVANGRPETLSLKQIIEHHVDFQ 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------- 419
            E+  R+ +  +     + E+ +GL+ A   ID II I+R     K              
Sbjct: 361 FELATRKYTTLLGKEREKSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVNGETENI 420

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                           TE Q  AIL +RL  L  LE   ++ E +  L    + + +LN+
Sbjct: 421 KFKSAISKKMAAMLRFTERQATAILEMRLYRLIGLEIEALQKEHEKTLENIARYEDILNN 480

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                  I  E+   K+ F       R+R T  E   A++A  ++  IE++ +  ++   
Sbjct: 481 YDSMAGVIMEELDSYKKEFG------RKRRTVVE--NAEEAVFEEKKIEEQQVVFLMDRF 532

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           G+ +++ +   + +     + +     +H     ++ L + +GK + +   +L  G+   
Sbjct: 533 GYAKTVDTGVYERNKEAADKENK--YIVHCMNIGKLCLFTDEGKMHQVKVLDLPHGKFRD 590

Query: 588 E--AIQLLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           +   I  + + + +++ +     +      KLL  +++G    V+ SE    +++     
Sbjct: 591 KGIPIDNVSNYSSSEEQIVMICEEEQMRYSKLLFATAQGMIKRVDGSEFQ-VSKRTIAAT 649

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISD 699
           K+  E+++  V  VT   +V +  +N   L F    +PE  +   GVR     K   + +
Sbjct: 650 KLQEEDRLVAVKVVTEYQNVVLQTKNGYFLRFLSADVPEKKKAAVGVRGIKLQKKDELEE 709

Query: 700 VICFKICEGLTWIDSAGRSYN-RSENDLLGWLGKRGGVGSL 739
           V  F+             +Y  ++ +     L KR G G+ 
Sbjct: 710 VYLFEEG------TETKITYGEKTVSLNRLKLAKRDGTGTK 744


>gi|58696764|ref|ZP_00372302.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537049|gb|EAL60183.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 854

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 230/782 (29%), Positives = 361/782 (46%), Gaps = 91/782 (11%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MS  G D G  +KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PLI GQGNFG+
Sbjct: 1   MSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  A+ RYTEAR+ +V+  +L  +DED VDFR  Y+  ++EPVV P++FPNLL NG 
Sbjct: 61  IDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGA 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SG+AVGMAT+IPSHN+ EI +A +  +DNPE+++++LLE + GPDFPTGG I+  R  I 
Sbjct: 121 SGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIR 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            ++  GRG   V+ +  +E++ +    IV+ EIPYQV K +LIEKI EL+  KRI  + +
Sbjct: 180 SAFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITE 239

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES +    V+    R+ +   ++  I  L+ + + F +N  VL+    P +M L  I
Sbjct: 240 IRDESDKSGIRVVIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLN-NNRPALMSLKEI 298

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           ++ ++  R+EVL RR+ FR++    +  I  GL IA L+IDE+I IIR    P       
Sbjct: 299 IEAFIDFRKEVLIRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASREL 358

Query: 420 ----------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + LTE Q+ AIL+++L+ L  LE+ ++++EL
Sbjct: 359 LNKEWKTSNEINTIIELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAEL 418

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++   ++  + L SG++   +I   ++E+K  F+         +     +        
Sbjct: 419 SSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQED 478

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +       +        R+ +           KE D +      +T   +L  S  G+
Sbjct: 479 MVITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGR 538

Query: 572 AYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFI 625
            Y L    L        G A+  +  L   + I          D    ++  ++ GN   
Sbjct: 539 VYRLKVYKLPLAEPTARGRALVNIFPLAEGETITNIMPLPSENDENQNIVFTTAYGNIRR 598

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSR 683
              ++       GK  +K+   +K+  V      DHV +     K + F +  + +  SR
Sbjct: 599 NSLADFHYIPSNGKIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSDVRQFKSR 658

Query: 684 GK-GVRLQSY-KDGGISDVICFK------------------------------------- 704
              GVR     K+  +  +                                         
Sbjct: 659 NSDGVRGIKLAKNDSVISMTILNGIGVATETKELYLKVPLAKRLGTAINNSIDSKLEKTL 718

Query: 705 -------------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                               +      + +  +     +  RGGVG        R+G  +
Sbjct: 719 NDLGIDNELFLKLAVNEEFILTITENGFGKRTSAYEYRITNRGGVGITNILTTSRNGNVV 778

Query: 752 SS 753
           +S
Sbjct: 779 AS 780



 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 68/553 (12%), Positives = 153/553 (27%), Gaps = 76/553 (13%)

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
                + S + I+E++   R    +R R             +   +   V     + KI 
Sbjct: 287 NNRPALMSLKEIIEAFIDFRKEVLIR-RTEFRLRKTREKAHIYIGLYIAVLSIDEVIKII 345

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
                      E +  E      I    +  S     L + ++ L++++ +  L+M +  
Sbjct: 346 RGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFLKDGVYRLTELQIKAILDMKLQR 405

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
           +  + +   L+  L   +   +E +    S      + +  + +      +     I   
Sbjct: 406 LTGLEK-DKLEAELSSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRFAVPRKTSIEES 464

Query: 408 RNEDKPKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
             + + +  +      +T      I  ++L   R             L  E    +  + 
Sbjct: 465 DTDIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVT 524

Query: 467 SGKQQWNQIAC-----EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           +        +       ++  K   ++ T  GR       ++  +  T    +  +    
Sbjct: 525 NTHTSVLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPLAEGETITNIMPLPSENDEN 584

Query: 522 ---VVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
              V  +  G IR           S    A+   EGD L      +  D + L +  GK+
Sbjct: 585 QNIVFTTAYGNIRRNSLADFHYIPSNGKIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKS 644

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD----------------------- 609
                 ++   +         I L  N  +++  + +                       
Sbjct: 645 IRFVVSDVRQFKSRNSDGVRGIKLAKNDSVISMTILNGIGVATETKELYLKVPLAKRLGT 704

Query: 610 -----------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                                        +   +L ++  G        E     R G  
Sbjct: 705 AINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTITENGFGKRTSAYEYRITNRGGVG 764

Query: 641 FLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              +     +   +       GD++ ++ +  KL+  S++ I    R  +GV L  +K  
Sbjct: 765 ITNILTTSRNGNVVASFPVEQGDNIMLITDKGKLIRISVNDIRIAGRSTQGVTL--FKTE 822

Query: 696 GISDVICFKICEG 708
               V+     E 
Sbjct: 823 SREKVVSVAKIED 835


>gi|227431864|ref|ZP_03913888.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352406|gb|EEJ42608.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 812

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 201/750 (26%), Positives = 366/750 (48%), Gaps = 28/750 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM +    +   ++K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDRNTYDHPYRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++D D AAA RYTEA
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  ++  + ++ VD    +++   EP V PS+ P+L  NG +GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI  A + L+D+P  ++ +L+ Y+ GPDFPTGG IV+  + I ++Y+ GRG   VRA
Sbjct: 183 NLKEINAALIYLLDHPAATLSQLMRYVKGPDFPTGG-IVQGLDGIKKAYKTGRGKIVVRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + ++  G   I +TE+PY+V KS L+ KI  + + K +  + ++RDES  +   ++ 
Sbjct: 242 KTEISDLRAGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVTGISEVRDESDREGMSIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
             ++  + + ++  +F  +D++  +     V    + P  + L   L+ +L+ R+EV+ +
Sbjct: 302 ELSKEANANGILTYLFKKTDLQISYNF-NMVAIHDQRPVHVGLKAGLEAFLSFRKEVVLK 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS++ +     R  I++GL+     +DE++A IR           +++ F  T+ Q +AI
Sbjct: 361 RSAYELTKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLINHFEFTQAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q++ E   L  +  +++ +++      + I  EI+ + + +S    
Sbjct: 421 VTLQLYRLTNTDVTQLEEEFSQLNDKINRLNQIIHEESALKDVIREEIKAITKAYSSP-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R +  E    +        I +E + V++S  G+ +     S   S       +  
Sbjct: 479 ----RRSVIEAEVENLVIDTAVTIAEEDVQVLVSRNGYYKRASLRSFKASDNENGLAEDD 534

Query: 552 --KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL---NHNQDIVTAF 606
                   +TT+ + + +  G     P   L   +           L   + ++ ++ A 
Sbjct: 535 LVVFQGTLNTTNHLFMFTNKGNVIYRPVHELPDTKWKDTGEHFSQQLSNWDKDEVVIKAI 594

Query: 607 VYD---STCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEK-MKLVVKVTG-- 658
             D         +VS+ G        +I+  A  +K    +K+  +   +  V       
Sbjct: 595 AVDNLEQGGAFTIVSNDGFIKQTTLVDIVPKAYKKKSSMAIKLKKDVSYVVNVAYFQNVK 654

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             +V ++      L ++I ++PE+  R  GV+    +D        F   +  +    A 
Sbjct: 655 RQNVLLLSHKGVGLRYAIKEVPEIGSRTSGVKAMDLRDDDTIKAALFITDDKQSVAIVAE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +     L    KRG  G LV     +
Sbjct: 715 NGAFKYMPVSLINHSKRGNKGVLVF--TQK 742


>gi|325106677|ref|YP_004267745.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
 gi|324966945|gb|ADY57723.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
          Length = 785

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 239/774 (30%), Positives = 381/774 (49%), Gaps = 37/774 (4%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
             D  +N      + +  VSL      RYL YA S I+ RA+PD+RDG KPV RRI++ M
Sbjct: 4   SKDADTNGQRDETDRIHYVSLSDETRRRYLNYAYSVIQSRALPDVRDGLKPVQRRILYVM 63

Query: 62  -SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
             ++ L   +  +K A+I G+  G  HPHGD SVYD+LVRLAQ F  R PLI GQGNFG+
Sbjct: 64  YHDLRLTADSKPRKCAKITGDTTGNYHPHGDASVYDALVRLAQDFTLREPLIDGQGNFGS 123

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           I G   AA RYTEA++T +A  ++  +    V+ R+ Y+    EPVV PS+FP+LL NGT
Sbjct: 124 IIGLPPAAARYTEAKLTPIAAELMSELRYQTVEMRENYDGMRQEPVVLPSRFPHLLVNGT 183

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMATSIP HN+ E+ +A L LIDNP+ ++ +L++Y+  PDFP GG IV  R  + 
Sbjct: 184 QGIAVGMATSIPPHNLHEVVKACLHLIDNPDATVAQLMKYVKAPDFPLGGRIVTDRRELR 243

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
            +Y  GRG  +VR  W  +++ +G     +V+T IPY V+   L+  +  +  +K++P L
Sbjct: 244 NTYETGRGSIKVRGEWEFDKLHKGKNRNRLVITSIPYNVETGPLMTDLGTIAESKKLPQL 303

Query: 299 EDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQ 353
             + DES E+    ++       D + +M  ++  + +E  F  N   L         P 
Sbjct: 304 VTVADESNEELGMRLVLEVKHENDAEDVMAFLYKHTALEQNFAFNATCLVPDEAGTLFPA 363

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-- 411
              L  +L+ +L  R EV+ +R  F +  +++R+ IL+G  I +  +D+ + +IR+    
Sbjct: 364 QCNLKEMLQHFLTFRMEVVRKRLEFLLAQLEKRIHILEGFEIVFSGLDKALRLIRSSKGK 423

Query: 412 -KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                 ++  F L E Q DAIL + L  + +LE  +I  EL    AE E++  LL S  +
Sbjct: 424 ADAAQKLMKAFPLDEIQTDAILEMALYRISELEIDRIIEELKEKRAEAERLRKLLASETK 483

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            W  IA E+ E+ + +      G   +            +++         VV+++ GWI
Sbjct: 484 MWRLIADELGELGKTYGNKRRTGLGSSEEIAEFDPSAYIVKE------NTNVVLTSDGWI 537

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           + +      +  +  +EGD++   L A T D+I+  + DG AYTLP   + +  G+GE +
Sbjct: 538 KRV-GRIQSVDKMRVREGDTVINVLPASTLDQIVFFADDGTAYTLPIDQIPASSGYGEPL 596

Query: 591 QLLIDLNHNQDIVTAFVYD-----STC--------KLLVVSSKGNAFIVEESEIIAN-TR 636
              I L     IV     D                 LL+ +  G    +  S      T+
Sbjct: 597 AKHIKLADGAKIVHGITTDPRFTPEDDSDEESPLPYLLIATEMGQVMAISFSSFRPPSTK 656

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
            G+ + +++  +K+  V  +   + + +  E  +++ F + ++P +   G+GV+     +
Sbjct: 657 VGRKYCRLAKGDKVVFVDLIREHYTMFLATEQARVIHFELAEVPLLAGPGRGVKGIKLAE 716

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           G              T           +       +  RGG G    K   R+G
Sbjct: 717 GDSVLGGVLLGRPSDTLRVVNENGKQLAFGQAKYGVTSRGGKGV---KTSTRTG 767


>gi|254391069|ref|ZP_05006277.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
 gi|197704764|gb|EDY50576.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 814

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 216/715 (30%), Positives = 354/715 (49%), Gaps = 26/715 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +        EE +  + +   ++  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 84  MARRSTKTPQPDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQ 143

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL     + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG+
Sbjct: 144 MNEMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGS 203

Query: 121 ID-GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +   D  AA RYTE RM     L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG
Sbjct: 204 LGNDDPPAAMRYTECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNG 263

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT++P HN+ E+  AA  LI  P   +E L+ ++ GPD PTGG +V     I
Sbjct: 264 SSGIAVGMATNMPPHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGGRVV-GLSGI 322

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG F++RA   VE+V      IVVTE+P+ V   ++I KI +L+ +K++  + 
Sbjct: 323 RDAYETGRGTFKIRATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIA 382

Query: 300 DIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           D++D +       ++        P+ ++E ++ L+ ME  F +N   L     P  + L 
Sbjct: 383 DVKDLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVD-GQPLTLGLK 441

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            +L+ +L HR  V+ RRS FR      R+ +++GLL+A ++IDE+I +IR+ +       
Sbjct: 442 ELLEVYLDHRFTVVRRRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQ 501

Query: 419 S---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
               RF L+E Q   IL+  LR L K +  +++SE D L+ E   +  +L S  +    +
Sbjct: 502 RLIERFGLSEVQTQYILDTPLRRLTKFDRIELESERDRLMDEIAALTRILESDAELRKLV 561

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           + E+  V + F        RRT   E        +   + +     ++ S     R++  
Sbjct: 562 SGELASVAKKFGTE-----RRTVLLESGAVPAPAVALEVADDPCRVLLSSTGLLARTVTG 616

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE------- 588
             +          D +  ++ A     I  +++ G+   +   +L               
Sbjct: 617 DPLPEPGPKRARHDLVVSSVTATARGDIGAVTSAGRLLRVAVIDLPQLPQTATAPTLSGG 676

Query: 589 -AIQLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
             +   + L  ++ ++     D + + L + + +G    V   +  AN +       +  
Sbjct: 677 APLSEFLSLEADETVICLTTLDESSQGLALGTLQGVVKRV-VPDYPAN-KDELEVFSLKE 734

Query: 647 EEKMKLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
            +++      +   + +  +  + +LL +   Q+    R   G+      DG   
Sbjct: 735 GDRIVGGAELRTGEEDLVFITSDAQLLRYPAAQVRPQGRAAGGMAGVKLADGARV 789


>gi|293400717|ref|ZP_06644862.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305743|gb|EFE46987.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 830

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 224/748 (29%), Positives = 386/748 (51%), Gaps = 24/748 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              +   NV    L   + +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G  +
Sbjct: 7   EEAVDHANVLTSPLEEIMGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMFVDGNTW 66

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A++KSA+ VG VIG  HPHGD SVYD++VR++Q +  R P I  QGN G+ID D AAA
Sbjct: 67  DKAYRKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQDWKIRTPQIDMQGNNGSIDDDPAAA 126

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+ +++E +LQ +D+D V +   +++   EP V P+++PNLL NG +GIA G A
Sbjct: 127 MRYTEARLGKISEYLLQDIDKDTVSWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYA 186

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E  +A++  I +P+ +++ L+E++ GPDFPTGG IV+  + I +++  G+G
Sbjct: 187 TNIPPHNLGECIDASIYRIQHPDCTLDDLMEFVQGPDFPTGG-IVQGLDGIKDAFTSGKG 245

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VR++  +E+       I+V EIPY+V KS +++KI ++ + K+I  + D+RDES  +
Sbjct: 246 RIMVRSKVSIEQTK-TVQQIIVHEIPYEVVKSNMVKKIDDIRLNKKIDGILDVRDESDRN 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +  D  L++  ++  +D++  +     +    + P  M L  +L  ++AHR
Sbjct: 305 GLRVVIDLKKDADAQLILNYLYKNTDLQVSYNY-NVIAIKDKRPVQMGLAAMLDAFIAHR 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FSLTE 425
           REV+ RRS+F +   ++R  IL+GL+ A   +DEIIA+IR+        V     F  +E
Sbjct: 364 REVILRRSAFDLDKKEKRCHILEGLIKAVSILDEIIALIRSSKDKADSKVKIIEAFGFSE 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI+ +RL  L   +  Q++ E  NL AE +++  +L   K+    +  E++EVK+ 
Sbjct: 424 PQAEAIVTMRLYRLSNTDITQLREEFANLQAEIKELHEILEDPKKLKKVMVAELKEVKKA 483

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F         R T  E    +    + AMI +E +   IS  G+++ +   S   +    
Sbjct: 484 FPTP------RLTKIEHEIEEIVIDKVAMIPQEQVMFTISRDGYVKRVSMRSYGAANDAM 537

Query: 546 KEGDSLKI---ALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQ 600
                          +T D IL  ++ G    +P    +    +  G  I   I +  ++
Sbjct: 538 TGIKEGDHLIGYGEVNTLDNILFFTSKGTYGYVPVYEVDDAKWKEIGSHINSKIKITSDE 597

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLV-VK 655
            I  AF+   + +   ++ ++  G        E  ++   K  + +K+  ++++    V 
Sbjct: 598 KITDAFIVKDFKTNSYMISITRHGLVKKTAICEYEVSRNNKTMSNMKLLEDDEVVQTYVA 657

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
              D + +  +   +  + I  IP  S R KGV+  +  +  I+  + +   +    +  
Sbjct: 658 YEEDEILIASKKGYITRYPISLIPATSPRSKGVKAMNLVEDEIASALIYN-NDNRQLVVF 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           +     +        +  R   GS++ K
Sbjct: 717 SDDCACKRMKLTDIDVTGRPTKGSMLCK 744


>gi|259500635|ref|ZP_05743537.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners DSM
           13335]
 gi|302191324|ref|ZP_07267578.1| DNA topoisomerase IV subunit A [Lactobacillus iners AB-1]
 gi|259168019|gb|EEW52514.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners DSM
           13335]
          Length = 831

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 220/769 (28%), Positives = 393/769 (51%), Gaps = 32/769 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG ++   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGG-LIIGNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHM-APVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR     K     +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L         ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F  +     RRT   E         ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 FGSA-----RRTQIVEQYT-KIEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P         R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 T------GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG--ISDVICFKIC- 706
                   + + +V  N   L F ++++P +  R  GV+  + K+    +   I F    
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 707 -EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              L       R   +     L     R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPHRIVAA 762


>gi|313837121|gb|EFS74835.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA2]
 gi|314927853|gb|EFS91684.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL044PA1]
 gi|314971894|gb|EFT15992.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA3]
 gi|328907313|gb|EGG27079.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium sp. P08]
          Length = 841

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 215/761 (28%), Positives = 364/761 (47%), Gaps = 38/761 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +    EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+   
Sbjct: 7   DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPD 66

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
               KSAR+VG+V+G+LHPH D ++YD+LVR AQP+  R PL+ G GNFG++D    AA 
Sbjct: 67  RPHVKSARVVGQVMGQLHPHSDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM      ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT
Sbjct: 126 RYTECRMAPPTLAMIDGLDEDTVDFTPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMAT 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI  A   ++D+P+  +++++ ++ GPD PTGG I+   + + ++YR GRG 
Sbjct: 186 NIPPHNLVEIVAALRHMLDHPDAVLDEIMRFVPGPDLPTGGRII-GLDGVADAYRTGRGS 244

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
           F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D +   +
Sbjct: 245 FKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLAN 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++      ++P+ L+E ++ L+ +E  F  N   L     P+ + L  +L+ +L HR
Sbjct: 305 GTRLVIEVKNGINPEALLERLYKLTKLEDSFATNAVCLV-EGQPRTLGLIDMLQVYLDHR 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            EV  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  ++  F L E
Sbjct: 364 LEVTLRRTKFQLSKAKDRLHLVEGLLMAIVDIDDVIAIIRSSEDATTARTRVMEAFDLDE 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL+++LR L K    +++SE D L    E +  + N   +    ++ E+ EV   
Sbjct: 424 VQANYILDMQLRRLTKFSTIELESERDELRERIEGLTLIANDKTELRRVVSGELAEVSAK 483

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RRT     + +  A      +  +P  V++S  G +  + S     +    
Sbjct: 484 YGTP-----RRTVLLGAAPSVAAASVPLEVPDDPCWVLLSATGLLARIDSADNLPATGDR 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--------LLSGRGHGEAIQLLIDLN 597
              D +  +          ++++ G+       +               G  +  L+ L 
Sbjct: 539 ASHDVIISSTRTTARGDFGIITSAGRLVRAHVVDLASLPMTATAPSVAGGTPLADLVGLE 598

Query: 598 HNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--V 654
            ++  +           L + +  G    V    +    +     + +   +++     +
Sbjct: 599 KDERALAVTSLSGKGPSLALGTRNGIVKRVNPELLG---KDSWEIIGLKDGDEVVGALEL 655

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 +  V +   LL F    +    R G GV     KD   +         G + + 
Sbjct: 656 DDDDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD--PAIFFGAAPRHGSSVVT 713

Query: 714 SA---------GRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            A              +           R   G    +   
Sbjct: 714 VAASSPAVAGKEPGSVKVTPFNQYPPKGRATGGMRCQRFLK 754


>gi|312872926|ref|ZP_07732986.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|312874231|ref|ZP_07734265.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|329920252|ref|ZP_08277036.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN 1401G]
 gi|311090301|gb|EFQ48711.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311091448|gb|EFQ49832.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|328936297|gb|EGG32745.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN 1401G]
          Length = 831

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 220/769 (28%), Positives = 394/769 (51%), Gaps = 32/769 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG ++   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGG-LIIGNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHM-APVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR     K     +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L         ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F  +     RRT   E  +      ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 FGSA-----RRTQIVEQYK-KIEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P         R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 T------GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG--ISDVICFKIC- 706
                   + + +V  N   L F ++++P +  R  GV+  + K+    +   I F    
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 707 -EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              L       R   +     L     R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPHRIVAA 762


>gi|325912052|ref|ZP_08174450.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 143-D]
 gi|325476002|gb|EGC79170.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 143-D]
          Length = 831

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 220/769 (28%), Positives = 394/769 (51%), Gaps = 32/769 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG ++   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGG-LIIGNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHM-APVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR     K     +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L         ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F  +     RRT   E  +      ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 FGSA-----RRTQIVEQYK-KIEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P         R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 T------GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG--ISDVICFKIC- 706
                   + + +V  N   L F ++++P +  R  GV+  + K+    +   I F    
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 707 -EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              L       R   +     L     R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPHRIVAA 762


>gi|56752405|ref|YP_173106.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
 gi|56687364|dbj|BAD80586.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
          Length = 858

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 232/819 (28%), Positives = 385/819 (47%), Gaps = 94/819 (11%)

Query: 6   ISNSNTLV-EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +++S      + +   +L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+
Sbjct: 1   MTDSIQFNGADRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHEL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL     F+KSAR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL++G GNFG+ID D
Sbjct: 61  GLTPDRPFRKSARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDND 120

Query: 125 SAAAYRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE R+  V+   +L+ + E+ VDF   ++    EP V P++ P LL NG SGI
Sbjct: 121 PPAAMRYTETRLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ EI +A +ALID P++S   LL Y+ GPDFPTGG ++   + I+++Y
Sbjct: 181 AVGMATNIPPHNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVI-GSQGILDAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             GRG   VR    +EE+  G        I+VTE+PYQV K+  IEK+A+L+   ++  +
Sbjct: 240 LEGRGSIPVRGIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            DIRDES  +   V+    R    D ++E ++  + +++ F   +  +     PQ + L 
Sbjct: 300 ADIRDESDREGMRVVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIV-EGQPQQLSLK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKP 415
            +L+++L+ R   L RR    ++  +RR+ IL+GLL +  ++D +I I+R        + 
Sbjct: 359 QLLEQFLSFREGTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTARA 418

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            +   F L E Q DA+L++ +R +  LE+ Q++ E  NL  ++ ++ +LL         +
Sbjct: 419 RLQVHFDLNERQADAVLSMPMRRITSLEQEQLQQEAANLREQQARLQTLLGDRPTLLKAL 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---------------- 519
             ++R++K  F         RT   E+     A  +Q      P                
Sbjct: 479 KKDLRDLKRRFGSP-----HRTRLPEIPPEAIAAPRQVTAPVAPISAPTPATAGPIQGEL 533

Query: 520 --------------------------ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
                                       + +S+R  +++  +  ++              
Sbjct: 534 IFNSATDSAVPDSAPVIAPRFAFQESTWLCLSDREQLQAASATELEPWLKAKSGAQERTD 593

Query: 554 A----LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY- 608
                  A     +L+++ +G      A        H   I  L+        + A +  
Sbjct: 594 FPKVLQWADPRQDLLVITAEG-----RAYRRSLREVHPGPIANLLPTGRQSTAIAATLLL 648

Query: 609 ---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
                   LL +SS+G    +  +E+   + +G   LK++ EE ++           ++G
Sbjct: 649 PLASEERSLLPLSSQGRVKRLALTELAEISNRGLQLLKLAEEEIIQAACLCAPQQEVLLG 708

Query: 666 ENRK------------LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
            +                  S        RG+  RL   ++G    + C  +  G   + 
Sbjct: 709 SSGGRLLRLSLSELPLASRIS--------RGQ-PRLLRLREGE-QPLGCLSLPSGQDLLL 758

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +     +     L  L + G +G+   +   +  + ++
Sbjct: 759 VSTLGLVKRLPLGLLRLCRAGDLGNNAFRFTDKRDRLIA 797



 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 48/137 (35%), Gaps = 3/137 (2%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           +  L  L   E + ++ A        +LL S+ G+   L    L            L+ L
Sbjct: 679 NRGLQLLKLAEEEIIQAACLCAPQQEVLLGSSGGRLLRLSLSELPLASRISRGQPRLLRL 738

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE-EKMKLV 653
              +  +      S   LL+VS+ G    +    +        G    + + + +++  +
Sbjct: 739 REGEQPLGCLSLPSGQDLLLVSTLGLVKRLPLGLLRLCRAGDLGNNAFRFTDKRDRLIAL 798

Query: 654 VKVTGDHVAVVGENRKL 670
           +      +A+   +++L
Sbjct: 799 LPAPSQGLAIFASDQRL 815


>gi|326316176|ref|YP_004233848.1| DNA topoisomerase IV subunit A [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373012|gb|ADX45281.1| DNA topoisomerase IV, A subunit [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 785

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 274/782 (35%), Positives = 408/782 (52%), Gaps = 61/782 (7%)

Query: 6   ISNSNTLVEENVKAVS-----LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +S+++    +  +  S     L    +  YL YALS +K RA+PD+ DG KPV RRI+ A
Sbjct: 1   MSDNDQPTLDFSQPESGDHLGLASYAQRAYLEYALSVVKGRALPDVCDGMKPVQRRILFA 60

Query: 61  MSEMGLDFGAAFK-------KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           M  MGL +G   +       KSAR+VG+V+G+ HPHGDQS YD+LVRLAQ F QRYPLI 
Sbjct: 61  MERMGLAYGGPTRNVPAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLID 120

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG+ DGD AAA RYTEAR+T++A L+L  +D+  V F   Y+    EP   P++ P
Sbjct: 121 GQGNFGSRDGDGAAAMRYTEARLTRIASLLLDEIDQGTVGFVPNYDGSTEEPRQLPARLP 180

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
             L NG SGIAVG+AT IPSHN++EI +A +AL+ NP+++ E+L   + GPD+P GG I+
Sbjct: 181 FALLNGASGIAVGLATEIPSHNLREIADACVALVKNPKLADEELAAMVPGPDYPGGGQII 240

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
            S   I ++YR GRG  +VRARW +E++ RG W +VVTE+P  V   +++E+I EL   K
Sbjct: 241 SSPGDIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPK 300

Query: 294 RIPLLEDIRDE--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
                + +  E                        VRIV  PK   +    L+ ++   +
Sbjct: 301 VKAGKKALSQEQTQLKATVLGVLDVVRDESSKDAPVRIVFEPKTGKVPQQELITTLLAHT 360

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +ET  P+N+ ++ +   P    L  +L+EW+A R++ + RRS  R+  +  R+ IL+G 
Sbjct: 361 SLETSAPINLTMVGLDGKPVQKSLRRMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGR 420

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
               LNIDE+IAIIR  D+PK  ++ RF L++ Q + IL +RLR L +LE  +I+ EL  
Sbjct: 421 QTVLLNIDEVIAIIRTADEPKAALIERFRLSDRQAEDILEIRLRQLARLEAIKIEQELKE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E+ K++ +L +       +  EI    + F+ +     RRT      +ADK    + 
Sbjct: 481 LREEQGKLEDILANPASLRRLMVKEIEADAKQFADA-----RRTLI----QADKRATAEV 531

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +  EP+TVV+S +GW+R+ + H  D     FK GD+L       T D ++   ++G+ Y
Sbjct: 532 KVVDEPVTVVVSQKGWVRARQGHGHDAGTFAFKSGDALYGTFECRTVDTLIAFGSNGRVY 591

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
           ++    L   RG G+ I  LI+L      V  F   +   LL+  S G  FI     + A
Sbjct: 592 SVAVSQLPGARGDGQPITTLIELEAGTQPVHYFAGPANAALLLAGSGGYGFIAAVEHMTA 651

Query: 634 NTRKGKTFLKVSSEEKMKLV----------VKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
             R GK F+ +   E++               V   HV       ++L F I ++ +M+ 
Sbjct: 652 RNRGGKAFVSLGEGEQLCRPSHAAFTSGSQALVPATHVCCASAGGRILTFEITELKQMAN 711

Query: 684 -GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK-----RGGV 736
            G+G+ L        ++    +        I   GR     +  L           RG  
Sbjct: 712 GGRGLMLIDLEPKDTLAGAAAYTRS---VRIAGVGRGGKERDETLEIRSLNNARFPRGRK 768

Query: 737 GS 738
           G 
Sbjct: 769 GK 770


>gi|309804012|ref|ZP_07698094.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|309809853|ref|ZP_07703703.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN
           2503V10-D]
 gi|308163931|gb|EFO66196.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|308169805|gb|EFO71848.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN
           2503V10-D]
          Length = 831

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 220/769 (28%), Positives = 394/769 (51%), Gaps = 32/769 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG ++   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGG-LIIGNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHM-APVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR     K     +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L         ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F  +     RRT   E  +      ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 FGSA-----RRTQIVEQYK-KIEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P         R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLIFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 T------GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG--ISDVICFKIC- 706
                   + + +V  N   L F ++++P +  R  GV+  + K+    +   I F    
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 707 -EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              L       R   +     L     R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPHRIVAA 762


>gi|312875591|ref|ZP_07735592.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325912647|ref|ZP_08175030.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 60-B]
 gi|311088845|gb|EFQ47288.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325478068|gb|EGC81197.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 60-B]
          Length = 831

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 221/769 (28%), Positives = 395/769 (51%), Gaps = 32/769 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG ++   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGG-LIIGNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDNM-APVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR     K     +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L A       ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F  +     RRT   E  +      ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 FGSA-----RRTQIVEQYK-KIEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P         R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 T------GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG--ISDVICFKIC- 706
                   + + +V  N   L F ++++P +  R  GV+  + K+    +   I F    
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 707 -EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              L       R   +     L     R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPHRIVAA 762


>gi|262195364|ref|YP_003266573.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
 gi|262078711|gb|ACY14680.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
          Length = 787

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 273/755 (36%), Positives = 410/755 (54%), Gaps = 25/755 (3%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS- 62
           D  S ++  +       SL+     RYL YALS I  RA+PD+RDG KPV RRI++AM  
Sbjct: 15  DAPSGTDDYMGGGELDASLQAEARRRYLNYALSVITARALPDVRDGLKPVQRRILYAMQA 74

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           +  L   A  KKSA++VG VIG+ HPHGD +VYD++VR+AQPF  R PL+ G GNFG++D
Sbjct: 75  DEKLSHEAKHKKSAKVVGAVIGRYHPHGDTAVYDAMVRMAQPFSLRLPLVDGSGNFGSLD 134

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDS AAYRYTEAR+T  A  +L  +    V FR  Y+    EP V P++FPNLL NG++G
Sbjct: 135 GDSPAAYRYTEARLTAAAMQLLDELKYATVPFRANYDATAEEPTVLPARFPNLLVNGSTG 194

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN++E+ +A +AL D+PE+++  LL+YI GPDFPTGG I+ S+  + E 
Sbjct: 195 IAVGMATNIPPHNLRELTKALIALADDPELNVSGLLKYIKGPDFPTGGQILNSKAELREI 254

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG  RVR  +   E  + S  +VVT +PY V K+ ++E+IAE+II +++P L D+R
Sbjct: 255 YEEGRGAIRVRGEYK-LETQKRSKILVVTSVPYGVTKATVVERIAEVIIKRKLPQLLDVR 313

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQVMPLD 358
           DES  DVR+VL  K  + DP+++M  +F  + ++  F +N+  L         P  + L 
Sbjct: 314 DESTTDVRVVLEIKKDA-DPEMIMAYLFKHTPLQLNFNVNLTCLVPSGNDASQPAQLGLK 372

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP 415
            +L+ +L  R EV  RR  F + A+ RR+ IL+G ++ +  +DE I IIR          
Sbjct: 373 DMLRHFLDFRYEVTERRYQFELAALLRRIHILEGFVVIFDALDETIRIIRRSDGRQDAAQ 432

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++ +F L + QVDAIL LRL  L KLE   I+ EL +  ++ + I+++L S K+ W  +
Sbjct: 433 KIMKKFGLDKEQVDAILELRLYRLAKLEINIIREELADKRSQAKSIEAILRSEKKLWGVV 492

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E+ EV E+   +      R T    + A+      A I  E   VV++  GW++  + 
Sbjct: 493 KTELGEVAELLGDA------RRTKTGGAAAELEFDADAYIIDEDAHVVLTRDGWLKRQRE 546

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
              D ++   +EGD +   L   T + +   +  G AY +   ++ +  G+G+ +Q L  
Sbjct: 547 -LKDPTSTRLREGDEVMAVLAGSTKEHVAFFTNYGSAYVIKIYDVPATSGYGDPVQKLFK 605

Query: 596 LNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIAN-TRKGKTFLKVSSEEKM 650
               + IV A  +D       +LL VSS G              TR G+ F +    +++
Sbjct: 606 FKDGERIVAAMAFDPRAMPPDELLTVSSGGFGQRFASEPFTQPTTRAGRKFARPPKGDEI 665

Query: 651 KLVVKVTGDHVAVV-GENRKLLIFSIDQIPEM-SRGKGVRLQSYKD-GGISDVICFKICE 707
             VV    D + VV       L     +I ++ + GKGV +    +   +   I      
Sbjct: 666 VDVVATEEDDIVVVATRKGYTLACRSGEINKLENPGKGVTVIKTGEHDKVIGFISGGRRA 725

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              +++SA        + +   L  RGG G  + K
Sbjct: 726 EALYVESAKGGRTFELHAVAQRLTTRGGKGHQLVK 760


>gi|315653531|ref|ZP_07906451.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners ATCC
           55195]
 gi|315488893|gb|EFU78535.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners ATCC
           55195]
          Length = 831

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 221/769 (28%), Positives = 395/769 (51%), Gaps = 32/769 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG ++   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGG-LIIGNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNM-APVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR     K     +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L A       ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F  +     RRT   E  +      ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 FGSA-----RRTQIVEQYK-KIEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P         R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 T------GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG--ISDVICFKIC- 706
                   + + +V  N   L F ++++P +  R  GV+  + K+    +   I F    
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 707 -EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              L       R   +     L     R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPHRIVAA 762


>gi|260906706|ref|ZP_05915028.1| DNA topoisomerase IV subunit A [Brevibacterium linens BL2]
          Length = 915

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 224/772 (29%), Positives = 361/772 (46%), Gaps = 45/772 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  V  V +   +E  +L YA+S I  RA+PD RDG KPV RRI++ M +MGL     
Sbjct: 1   MTEGRVIDVDVSSEMESSFLEYAVSVIHSRALPDARDGLKPVQRRIVYQMGDMGLRPERG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             KS+RIVG+V+GKLHPHGD ++YD+LVRL+Q F+ R PL+ G GNFG++D D  AA RY
Sbjct: 61  HVKSSRIVGDVMGKLHPHGDTAIYDALVRLSQSFIMRVPLVDGHGNFGSLD-DGPAAPRY 119

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T  +  ++ G+DED VDF   Y+   ++P V PS FPNLL NGTSGIAVGMAT++
Sbjct: 120 TEARLTSASMQMIAGLDEDVVDFVGNYDNTLTQPEVLPSAFPNLLINGTSGIAVGMATNM 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN  E+  A   LI NPE  + +L+ +I GPD PTGG I+   + + E+Y  GRG FR
Sbjct: 180 APHNPGEVIAACCHLIRNPEAGLAELMRFIPGPDLPTGGRII-GLDGVREAYETGRGTFR 238

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVR 310
            RA   +E +      IVVTE+PY V   +++ K+ + + AK++  +  I D S   +  
Sbjct: 239 TRATVSIENINARRKGIVVTELPYLVGPEKVVSKVKDAVGAKKLTGIASIDDYSDRKNGM 298

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++       +P+ ++  ++  + +E  F +N   L     P+ + L  +L  +LAHR +
Sbjct: 299 RLVIGIKNGFNPEAVLAELYRQTPLEESFSMNNVCLVD-GQPRTLGLRELLTVYLAHRID 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F+++    R+ +++GLLIA L+IDE+I +IR+ D     +  ++  F L+E Q
Sbjct: 358 VIRRRTVFQLRKAKDRLHLVEGLLIAILDIDEVIQLIRSSDDAATARTRLMDVFELSELQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+L+LR L K    ++++E D L  +   ++ LL    +    +A E+    E   
Sbjct: 418 ATYILDLQLRRLTKFSRIELEAERDELRKKIAYLEDLLADEAKLRELVATELEATAEAIG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                     +  E+S   K       I   P  V++S  G I      S          
Sbjct: 478 SPRRTVLIEGSMKELSAKGKKAQADLKIADAPCRVLLSTSGRIARTADASPLQRVGKRSS 537

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--------LLSGRGHGEAIQLLIDLNHN 599
            D+L+  + + T  ++  +++ G+ + +   +               G  I   + L  N
Sbjct: 538 HDALRSEIVSTTQGKVGAVTSTGRLHMVDVVDLPALPPAATRPNVAGGVKIADYVTLEKN 597

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---V 656
           + ++     D     ++ ++ G    V  +      +     + +  ++ +  V +   +
Sbjct: 598 ETVLGLIDLDRE--FVLGTAGGVVKRVSVA--ARPNKSEWEAITLKGKDSVIGVAQPKDI 653

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT----- 710
                  V  N +LL F    +        GV          +           T     
Sbjct: 654 DESLAVFVTSNAQLLAFDASGLRAQGWNASGVAGMKVAADARALFFGMTPKAAKTDEEGD 713

Query: 711 -----------WIDSAGRSYN------RSENDLLGWLGKRGGVGSLVPKGFP 745
                       + S    Y       +  +        R   G    K   
Sbjct: 714 ADTNIGTFAVVTVASGENFYGAPSSSIKVSDFSEYPTKGRATSGVRAHKFLK 765


>gi|224532519|ref|ZP_03673144.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
 gi|224512591|gb|EEF82967.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
          Length = 662

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 238/660 (36%), Positives = 386/660 (58%), Gaps = 24/660 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AF
Sbjct: 6   NKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYT
Sbjct: 66  KKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++ 
Sbjct: 126 EAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMA 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +
Sbjct: 186 PHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   +
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP ++M  ++  ++ +  F +N   L    +P+ + L+ +L E++ HR+ ++
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALV-NGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++       K  +VS F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVSNFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           ++L++RL+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E   +   F   
Sbjct: 424 SVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT           T    +++KE I V+++ +G+++ L  +           LS
Sbjct: 484 -----RRTKII-YDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHN 599
           +    +GD + IAL  +T D + ++S +GK Y + A  +       +   +   I+L   
Sbjct: 538 SFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQ 597

Query: 600 QDIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           ++I+T            LL+ ++ G     E ++  A   +G   +K++ ++ +     V
Sbjct: 598 EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIV 657



 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 54/145 (37%), Gaps = 15/145 (10%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKV-TGDHVAVVGENRKL 670
           +++++ KG    + ++E       GK      ++  +++ + + V T D++ ++    KL
Sbjct: 509 VVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKL 568

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKD----GGISDVICF----KICEGLTWIDSAGRSYNRS 722
            + +  +I + SR    + Q+  +    G   +++       + +    + +        
Sbjct: 569 YLINAYEIKDSSRAS--KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIAR 626

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRS 747
                    K    G +V K   + 
Sbjct: 627 FESTDFKAVK--SRGVIVIKLNDKD 649


>gi|269836114|ref|YP_003318342.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
 gi|269785377|gb|ACZ37520.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
          Length = 813

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 207/760 (27%), Positives = 371/760 (48%), Gaps = 31/760 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE ++        E+ ++ YAL+ +  RA+PD RDG KPV RRI+  M E G        
Sbjct: 11  EETIETEEFSTLFEDAFVQYALAVVTSRALPDARDGLKPVQRRILWCMYENGHRSNRPTV 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VG+V+   HPHGD +VYD+ VR+AQ F  RYPLI GQGNFG+IDGD+AAAYRYTE
Sbjct: 71  KSASVVGDVLKSYHPHGDSAVYDAAVRMAQDFTMRYPLIEGQGNFGSIDGDAAAAYRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSI 191
            R++ + EL+L+ ++++ V F  TY +  +  +PV  P++ P  + N +SGIAVG++T I
Sbjct: 131 MRLSPIGELLLRDIEQETVPFEQTYLQMPNVVQPVYLPARIPP-ICNPSSGIAVGLSTDI 189

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E   AA+AL+DNPE+++++L++ + GPDFPTGG I+   + I      G+G   
Sbjct: 190 PPHNLREAIRAAIALLDNPEMTVDELMKILPGPDFPTGGRII-GTDGIRAYLESGKGRLV 248

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-R 310
           +R      E       +VVTEIP  + +SRL+  I   +   ++  + D+R+ES ++   
Sbjct: 249 IRGEVR-LEEELRQRNLVVTEIPP-ISRSRLVRSIINAVNDGKVTGVTDVRNESDDEKGT 306

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-----SMGRVPQVMPLDGILKEWL 365
            ++    RS  P++++  ++  +D++T   +NM  L        R P+   +  +L+ W 
Sbjct: 307 RIVVELERSATPEVVLNQLYRFTDLQTAVNVNMVFLFGDPGQPARQPRRTGMLDLLRYWN 366

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H+ +V+ RR+ ++++    R+ +++GL+I   + DEI+ I +           +  +++
Sbjct: 367 RHQIDVITRRAEYQLRKAQERLHVVEGLIIGAAHADEIVRIFQKARDRNVAKEKIKVKYN 426

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q D I N+ L  + +L+  +   E   L    +++ +LL S  ++   +  E+  +
Sbjct: 427 LTDIQADVIANMTLAQVTRLDAAKYAEEKKELTKRIKELQALLASEAKKVALLKEELTAI 486

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS-VDLS 541
            +           R    E++            E+ PI +V S  G +++L  ++     
Sbjct: 487 AQEHGDDRRTRIDREGQEEIASVASLI------EERPILIVASQSGRVKALPENAFKRAR 540

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
           A     G+ L   + A T D +L+L+  G+ Y      +   +    GE  Q +  L  +
Sbjct: 541 AGRTARGEGLAAIVPASTLDYLLVLTRGGRVYLSRGHEVPAGTRASSGEPAQKVFGLKPD 600

Query: 600 QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + + T    +       ++  ++ G       +E    T  G   L++  ++++      
Sbjct: 601 EALATILPVNELTEDRYVVWFTANGKVKKTSLAEYRTITSAGLNDLRLLGDDRVVAATLS 660

Query: 657 T-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEGLTWID 713
             G    V+  N + L F+ D++    R G+GV   + K G  +   +          + 
Sbjct: 661 ESGGEYLVIASNGQALRFADDEVRATGRDGQGVNAIALKAGAEVVTALAIPPKSDGDVLV 720

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +   +          +R   G        +  +   +
Sbjct: 721 VTAQGMGKRTALKDFPARRRATAGVAAI-TLAKGDRIAGA 759



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 6/132 (4%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIAN 634
           A + +   G        I L    ++VTA          +LVV+++G        +  A 
Sbjct: 679 ADDEVRATGRDGQGVNAIALKAGAEVVTALAIPPKSDGDVLVVTAQGMGKRTALKDFPAR 738

Query: 635 TRK--GKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQ 690
            R   G   + ++  +++     VT  D V +     + L  ++  +    R  KG RL 
Sbjct: 739 RRATAGVAAITLAKGDRIAGAALVTPDDDVVLGAAGGQALQVTVKDLRRQGRATKGSRLL 798

Query: 691 SYKDGGISDVIC 702
                     I 
Sbjct: 799 EVAKNDHVATIA 810


>gi|148272833|ref|YP_001222394.1| DNA topoisomerase IV subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830763|emb|CAN01703.1| putative topoisomerase II subunit A [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 848

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 220/767 (28%), Positives = 363/767 (47%), Gaps = 31/767 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     + +     E ++ V +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MSPSTTNTTPDEPAERIEDVDVSTEMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMGL       KSAR+ GEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG+
Sbjct: 61  MSEMGLRPDRGHVKSARVTGEVMGKLHPHGDSAIYDAMVRMAQSFTLRVPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +++G+DED VDF   Y+    +P V P+ FPNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALAMVEGLDEDVVDFVPNYDNAFMQPAVLPAAFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E+  AA  LID+P+ S++ L+ ++ GPD PTGG I+     + 
Sbjct: 180 SGIAVGMATNMVPHNLIEVVGAARHLIDHPDASLDDLMSFVPGPDLPTGGTII-GLSGVK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG F+ RAR  VE +      +VVTE+PY V   ++IEKI + +  K++  + +
Sbjct: 239 DAYLTGRGSFKTRARVSVESLTPRKSGLVVTELPYLVGPEKVIEKIKDGVQNKKLSGITN 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +       ++       +P+ ++E ++  + +E  F +N   L     PQ + L  
Sbjct: 299 VTDLTDRTHGLRLVIEIKTGFNPEAVLEQLYRYTPLEDGFSVNNVALVD-GSPQTLGLKE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPV 416
           +L+ ++AHR EV+ RR+ +R+     R+ ++ GLLIA L+IDE+I +IR  D     +  
Sbjct: 358 LLQVYVAHRLEVVTRRTRYRLARRQERLHLVLGLLIAILDIDEVIQVIRGSDDTEQARAR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L+  Q D IL LRLR L +    +++ E D L AE  +++++L   ++    ++
Sbjct: 418 LMDVFDLSTLQADYILELRLRRLTRFSRIELEEERDRLQAEIAELEAILADPRRLRALVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E++EV + F                  + +       I   P  V++S  G    +   
Sbjct: 478 TELQEVADRFGTPRRTLLTEAAPSVAGASSRRAAPVLEIADVPCRVLLSTTGRAVRVDLP 537

Query: 537 SVDLSALHFKEGDSLKI----ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +            S       A+   +  RI  ++  G+  T+   +L         +  
Sbjct: 538 TDAPGTPLQTVRRSSHDAVLTAIETTSRTRIGAITNTGRLITMTPVDLPVVPVASVQLGA 597

Query: 593 LIDL-------NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            + +       +  + +V      +   + + + +G    +  S + A  +     + + 
Sbjct: 598 GVRIRDYLGLADRKERVVALVALGTDEAIALGTRQGVVKRIAPSALPA--KPEFEVIALK 655

Query: 646 SEEKMKLVVK-VTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICF 703
             +++    +    D +  V    +LL F    +     +  GV   +   G        
Sbjct: 656 KGDEVVGARQGAETDELVFVTSEAQLLHFPAVSVRPQGIQAGGVAGVNLGAGARVLFFSS 715

Query: 704 KICEGLTWIDSAGR---------SYNRSENDLLGWLGKRGGVGSLVP 741
              EG   +  +              +           R   G    
Sbjct: 716 VAPEGAEVVTISASSATIAGVDPGRAKVSAFGDFPRKGRATGGVRAH 762


>gi|306818810|ref|ZP_07452532.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|304648496|gb|EFM45799.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
          Length = 847

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 224/785 (28%), Positives = 364/785 (46%), Gaps = 59/785 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SNS+    ++++ + +   +E  +L YALS I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 28  MSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQMG 87

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS+R+VGEV+GKLHPHGD ++YD+LV LAQPF  R PL+ G GNFG+ D D 
Sbjct: 88  LTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-DG 146

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ Q +  +++G+DED VDF   Y+ +  +P V P+ FPNLL NG +GIAV
Sbjct: 147 PAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIAV 206

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G+AT+IP HNV E    A+ L+D+P+ S+E L+ +  GPD P GG ++     I E+Y  
Sbjct: 207 GVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGG-VIVGTAGIREAYET 265

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IVVTE+PY V   ++ EK+ + + + +I  +   +D S
Sbjct: 266 GRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDLS 325

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
              +   ++        P+ ++ S++  + ++  F +N   L  G V + + L   L+ +
Sbjct: 326 DRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEV-KTLGLRAALQVF 384

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR+ D     +  ++S F
Sbjct: 385 VDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLISVF 444

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q + IL L+LR L K    ++++E D L A   +++++L S ++    +  E+++
Sbjct: 445 DLSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIAELEAILASTEKLHGVVRRELQD 504

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE---------------KEPITVVISN 526
                S       RRT   E      A  +  +                  EP  +V S 
Sbjct: 505 TATALSSP-----RRTLLLEEDGTAVAAAEDDLAPAVGVTLTSEVPLEVTDEPCRIVWSA 559

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP---------A 577
            G    + +              S        T     ++++ G    L           
Sbjct: 560 TGEAARIDASVSFERPAGIPIAGS----CETRTRGVFGVVTSSGFVVRLDTLTLPPAKTV 615

Query: 578 GNLLSGRGHGEA---IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
            +        E    +    +L   + +V     D    + +++  G    +        
Sbjct: 616 ADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDEIVGIITESGVIKRMRPDYPSTQ 675

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
            R     + +   +++        D    +V  + +LL      +    R   GV   S 
Sbjct: 676 NR--FPIINLDDTDQVVFAGAAGDDAQFVLVSTDAQLLRTPASAVRPQGRNAGGVAGMSL 733

Query: 693 KDGGISDVICFKIC-EGLTWIDSA-----------GRSYNRSENDLLGWLGKRGGVGSLV 740
           +              E  + + +             +S  +        +  RGG G   
Sbjct: 734 RPNTKVLAGAILPELEVASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQGVRA 793

Query: 741 PKGFP 745
            +   
Sbjct: 794 QRFLK 798


>gi|227875501|ref|ZP_03993641.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227843837|gb|EEJ54006.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 847

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 224/785 (28%), Positives = 364/785 (46%), Gaps = 59/785 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SNS+    ++++ + +   +E  +L YALS I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 28  MSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQMG 87

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS+R+VGEV+GKLHPHGD ++YD+LV LAQPF  R PL+ G GNFG+ D D 
Sbjct: 88  LTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-DG 146

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ Q +  +++G+DED VDF   Y+ +  +P V P+ FPNLL NG +GIAV
Sbjct: 147 PAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIAV 206

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G+AT+IP HNV E    A+ L+D+P+ S+E L+ +  GPD P GG ++     I E+Y  
Sbjct: 207 GVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGG-VIVGTAGIREAYET 265

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IVVTE+PY V   ++ EK+ + + + +I  +   +D S
Sbjct: 266 GRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDLS 325

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
              +   ++        P+ ++ S++  + ++  F +N   L  G V + + L   L+ +
Sbjct: 326 DRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEV-KTLGLRAALQVF 384

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR+ D     +  ++S F
Sbjct: 385 VDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLISVF 444

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q + IL L+LR L K    ++++E D L A   +++++L S ++    +  E+++
Sbjct: 445 DLSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIAELEAVLASTEKLHGVVRRELQD 504

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE---------------KEPITVVISN 526
                S       RRT   E      A  +  +                  EP  +V S 
Sbjct: 505 TATALSSP-----RRTLLLEEDGTAVAAAEDDLAPAVGVTLTSEVPLEVTDEPCRIVWSA 559

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP---------A 577
            G    + +              S        T     ++++ G    L           
Sbjct: 560 TGEAARIDASVSFERPAGIPIAGS----CETRTRGVFGVVTSSGFVVRLDTLTLPPAKTV 615

Query: 578 GNLLSGRGHGEA---IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
            +        E    +    +L   + +V     D    + +++  G    +        
Sbjct: 616 ADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDEIVGIITESGVIKRMRPDYPSTQ 675

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
            R     + +   +++        D    +V  + +LL      +    R   GV   S 
Sbjct: 676 NR--FPIINLDDTDQVVYAGAAGDDAQFVLVSTDAQLLRTPASAVRPQGRNAGGVAGMSL 733

Query: 693 KDGGISDVICFKIC-EGLTWIDSA-----------GRSYNRSENDLLGWLGKRGGVGSLV 740
           +              E  + + +             +S  +        +  RGG G   
Sbjct: 734 RPNTKVLAGAILPELEVASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQGVRA 793

Query: 741 PKGFP 745
            +   
Sbjct: 794 QRFLK 798


>gi|307701128|ref|ZP_07638153.1| DNA gyrase/topoisomerase IV, A subunit [Mobiluncus mulieris
           FB024-16]
 gi|307614123|gb|EFN93367.1| DNA gyrase/topoisomerase IV, A subunit [Mobiluncus mulieris
           FB024-16]
          Length = 847

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 224/785 (28%), Positives = 364/785 (46%), Gaps = 59/785 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SNS+    ++++ + +   +E  +L YALS I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 28  MSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQMG 87

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS+R+VGEV+GKLHPHGD ++YD+LV LAQPF  R PL+ G GNFG+ D D 
Sbjct: 88  LTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-DG 146

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ Q +  +++G+DED VDF   Y+ +  +P V P+ FPNLL NG +GIAV
Sbjct: 147 PAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIAV 206

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G+AT+IP HNV E    A+ L+D+P+ S+E L+ +  GPD P GG ++     I E+Y  
Sbjct: 207 GVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGG-VIVGTAGIREAYET 265

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IVVTE+PY V   ++ EK+ + + + +I  +   +D S
Sbjct: 266 GRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDLS 325

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
              +   ++        P+ ++ S++  + ++  F +N   L  G V + + L   L+ +
Sbjct: 326 DRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEV-KTLGLRAALQVF 384

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR+ D     +  ++S F
Sbjct: 385 VDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLISVF 444

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q + IL L+LR L K    ++++E D L A   +++++L S ++    +  E+++
Sbjct: 445 DLSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIAELEAVLASTEKLHGVVRRELQD 504

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE---------------KEPITVVISN 526
                S       RRT   E      A  +  +                  EP  +V S 
Sbjct: 505 TATALSSP-----RRTLLLEEDGTAVAAAEDDLAPAVGVTLTSEVPLEVTDEPCRIVWSA 559

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP---------A 577
            G    + +              S        T     ++++ G    L           
Sbjct: 560 TGEAARIDASVSFERPAGIPIAGS----CETRTRGVFGVVTSSGFVVRLDTLTLPPAKTV 615

Query: 578 GNLLSGRGHGEA---IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
            +        E    +    +L   + +V     D    + +++  G    +        
Sbjct: 616 ADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDEIVGIITESGVIKRMRPDYPSTQ 675

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
            R     + +   +++        D    +V  + +LL      +    R   GV   S 
Sbjct: 676 NR--FPIINLDDTDQVVFAGAAGDDAQFVLVSTDAQLLRTPASAVRPQGRNAGGVAGMSL 733

Query: 693 KDGGISDVICFKIC-EGLTWIDSA-----------GRSYNRSENDLLGWLGKRGGVGSLV 740
           +              E  + + +             +S  +        +  RGG G   
Sbjct: 734 RPNTKVLAGAILPELEVASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQGVRA 793

Query: 741 PKGFP 745
            +   
Sbjct: 794 QRFLK 798


>gi|269977252|ref|ZP_06184225.1| DNA gyrase subunit A [Mobiluncus mulieris 28-1]
 gi|269934555|gb|EEZ91116.1| DNA gyrase subunit A [Mobiluncus mulieris 28-1]
          Length = 847

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 224/785 (28%), Positives = 364/785 (46%), Gaps = 59/785 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SNS+    ++++ + +   +E  +L YALS I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 28  MSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQMG 87

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS+R+VGEV+GKLHPHGD ++YD+LV LAQPF  R PL+ G GNFG+ D D 
Sbjct: 88  LTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-DG 146

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ Q +  +++G+DED VDF   Y+ +  +P V P+ FPNLL NG +GIAV
Sbjct: 147 PAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIAV 206

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G+AT+IP HNV E    A+ L+D+P+ S+E L+ +  GPD P GG ++     I E+Y  
Sbjct: 207 GVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGG-VIVGTAGIREAYET 265

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IVVTE+PY V   ++ EK+ + + + +I  +   +D S
Sbjct: 266 GRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDLS 325

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
              +   ++        P+ ++ S++  + ++  F +N   L  G V + + L   L+ +
Sbjct: 326 DRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEV-KTLGLRAALQVF 384

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR+ D     +  ++S F
Sbjct: 385 VDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLISVF 444

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q + IL L+LR L K    ++++E D L A   +++++L S ++    +  E+++
Sbjct: 445 DLSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIAELEAVLASTEKLHGVVRRELQD 504

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE---------------KEPITVVISN 526
                S       RRT   E      A  +  +                  EP  +V S 
Sbjct: 505 TATALSSP-----RRTLLLEEDGTAVAAAEDDLAPAVGVTLTSEVPLEVTDEPCRIVWSA 559

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP---------A 577
            G    + +              S        T     ++++ G    L           
Sbjct: 560 TGEAARIDASVSFERPAGIPIAGS----CETRTRGVFGVVTSSGFVVRLDTLTLPPAKTV 615

Query: 578 GNLLSGRGHGEA---IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
            +        E    +    +L   + +V     D    + +++  G    +        
Sbjct: 616 ADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDEIVGIITESGVIKRMRPDYPSTQ 675

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
            R     + +   +++        D    +V  + +LL      +    R   GV   S 
Sbjct: 676 NR--FPIINLDDTDQVVFAGAAGDDAQFVLVSTDAQLLRTPASAVRPQGRNAGGVAGMSL 733

Query: 693 KDGGISDVICFKIC-EGLTWIDSA-----------GRSYNRSENDLLGWLGKRGGVGSLV 740
           +              E  + + +             +S  +        +  RGG G   
Sbjct: 734 RPNTKVLAGAILPELEVASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQGVRA 793

Query: 741 PKGFP 745
            +   
Sbjct: 794 QRFLK 798


>gi|332529074|ref|ZP_08405039.1| DNA topoisomerase IV subunit A [Hylemonella gracilis ATCC 19624]
 gi|332041518|gb|EGI77879.1| DNA topoisomerase IV subunit A [Hylemonella gracilis ATCC 19624]
          Length = 792

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 273/792 (34%), Positives = 420/792 (53%), Gaps = 74/792 (9%)

Query: 6   ISNSNTLVEENVK--AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S   T + +     ++ L    +  YL YALS +K RA+PD+ DG KPV RRI++AM  
Sbjct: 1   MSTETTDLNQGETGDSLWLANYAQRAYLEYALSVVKGRALPDVSDGQKPVQRRILYAMER 60

Query: 64  MGLDFGA----AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           MGL +         KSAR+VG+V+G+ HPHGDQ+ YD+LVR+AQ F QRYPLI GQGNFG
Sbjct: 61  MGLGYSGNTAAKPVKSARVVGDVLGRFHPHGDQAAYDALVRMAQDFAQRYPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           + DGD AAA RYTEAR+ +++ L+L  +DE  VDF   Y+    EP   P++ P  L NG
Sbjct: 121 SRDGDGAAAMRYTEARLAKISSLLLDEIDEGTVDFMPNYDGSTEEPKQLPARLPFTLLNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            SGIAVG+AT IPSHN+ E+  A +ALI  P++  E+L E + GPD+P GG I+ +   I
Sbjct: 181 ASGIAVGLATEIPSHNISEVAAACVALIKTPKLKDEELFELLPGPDYPGGGQIISAEADI 240

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-- 297
            E+YR GRG  +VRARW +EE+ RG W +VVTE+P  V   +++E+I EL   K      
Sbjct: 241 AEAYRTGRGSLKVRARWKIEELARGQWQLVVTELPPGVSTQKVLEEIEELSNPKVKAGKK 300

Query: 298 ----------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
                           L+ +RDES     VR+V  PK   +D + L+ ++   + +ET  
Sbjct: 301 TVTQEQTQLKSTLLSVLDGVRDESSKDAPVRLVCEPKTSKIDQNELITTLLAHTSLETSA 360

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
           P+N+ ++ +   P    +  +L+EW+A RR+ + RRS  R+  +  R+ IL+G     LN
Sbjct: 361 PINLTMVGLDGKPVQKSMRQMLEEWIAFRRQTIARRSQHRLGKVQDRIHILEGRQTVLLN 420

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           +DE+I IIRN D+PKP ++ RF L++ Q + IL +RLR L +LE  +I+ EL  L  +++
Sbjct: 421 VDEVIKIIRNSDEPKPALIKRFRLSDRQAEDILEIRLRQLARLEAIKIEQELAELRGKEK 480

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  +L S       +  EI    + F  +     RRT      +A+K  + +  +  EP
Sbjct: 481 ELQDILGSPAALRKLMVKEIEADAKAFGDA-----RRTLI----QAEKKAVAEVKVIDEP 531

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +TVV+S +GW+R+ + H  D ++  FK GD L       T D +L   ++G+ Y++P   
Sbjct: 532 VTVVVSQKGWVRARQGHGHDAASFAFKAGDGLYGTFECRTVDVMLAFGSNGRVYSVPVSA 591

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L   RG G+ +  +++L     +V  +   ++  LL+ +S G  F+ +   +++  + GK
Sbjct: 592 LPGARGDGQPLTTMVELEAGTQLVHYYAGPASAWLLLSTSGGYGFLAQVEHMVSRQKGGK 651

Query: 640 TFLKVSSE---EKM--------------KLVVKVTG------DHVAVVGENRKLLIFSID 676
            F+   S+   + +               +     G       HV  V    ++L F I 
Sbjct: 652 AFINCGSDGTPDTVCRPSMAHAPNPATGVVASAAEGGLHSPASHVVCVSTGGRILSFQIG 711

Query: 677 QIPEM-SRGKGVRLQSY-KDGGISDVICFKIC---EGLTWIDSAGRSYNRSENDLLGW-- 729
           ++  M S G+G+ L        ++    +      EGL      GR     +  L     
Sbjct: 712 ELKPMPSGGRGLMLIDLEPKDQLAGAAAYTRSVRIEGL------GRGGKERDETLEIRSL 765

Query: 730 ---LGKRGGVGS 738
                 RG  G 
Sbjct: 766 NNAKAARGRKGK 777


>gi|330998783|ref|ZP_08322511.1| DNA topoisomerase IV, A subunit [Parasutterella excrementihominis
           YIT 11859]
 gi|329576280|gb|EGG57796.1| DNA topoisomerase IV, A subunit [Parasutterella excrementihominis
           YIT 11859]
          Length = 939

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 259/765 (33%), Positives = 408/765 (53%), Gaps = 39/765 (5%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D +  +    + +   ++L +     YL YA+S +K RA+PD+ DG KPV RRI++AM
Sbjct: 152 GSDIVEEALKHADTDCDELTLAYFASRAYLEYAISVVKGRALPDVCDGMKPVQRRILYAM 211

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
             +GL+      KSAR+VGEV+GK HPHGD + YD++VRLAQ F  RYPL+ GQGNFG+ 
Sbjct: 212 KRLGLNPDVKTVKSARVVGEVLGKYHPHGDSAAYDAMVRLAQDFTMRYPLVQGQGNFGSA 271

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTE R+++ A+L+L  +D+  V F   Y+    EPV+ P++ P LL NG+S
Sbjct: 272 DGDGAAAMRYTEVRLSKYADLLLGELDKGTVKFIPNYDGTHKEPVLLPARLPVLLLNGSS 331

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IPSHN+ E+ EAA+ +I NPEI+ ++LLE + GPDFP G  ++ S   I  
Sbjct: 332 GIAVGMATEIPSHNLTEVGEAAIEVIRNPEITTDELLEIVKGPDFPGGAQVISSASDIKN 391

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---- 297
            YR G G  +VRA +  EE+ RG W +V   +PY+V   +++ ++  L   K        
Sbjct: 392 VYRSGYGNLQVRATYHFEELSRGQWQLVFDSVPYKVSVMKVMSELEALTNPKAPQGKKSL 451

Query: 298 --------------LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                         +  +RDES+ +  VR+V+ PK++S+D + L+ +I   + +ET    
Sbjct: 452 TAKQQQDKQLIMNVMSGMRDESSAEAPVRLVIDPKSKSIDREELVSTILSKTSLETSCKF 511

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ V+ +   P+   L  IL EW++ R   +  RS   +   + R+  L+G LI  ++I+
Sbjct: 512 NLVVIGIDGKPRQKGLKDILSEWVSFRLRTVRARSQTSLNEAEARIHTLEGRLIVLVDIE 571

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D PK  +++ F L++ Q + IL ++LR L  L+E +++ EL+ L  E E++
Sbjct: 572 EVIRIIRGADDPKKELITHFGLSDTQAEDILEIKLRQLASLDEVKLRKELEKLRNEAERL 631

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             LL   K+   ++  EIR+  + +        RRT   E   A         +  EP+T
Sbjct: 632 RGLLTDEKKLRREVTKEIRQDIDTYGDE-----RRTLIEEAKGA----SIAKQVIDEPVT 682

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V++S +G++RS + H  D  A++FK GD  + ++   + D + +LS  G+ Y++P  +L 
Sbjct: 683 VIVSEKGFLRSRQGHGFDARAMNFKLGDKYRCSMECRSVDNLYILSNTGRIYSIPVSSLP 742

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           S RG G  +   +               S   LL  S     F  + S++    R GK+F
Sbjct: 743 SARGEGTHVSAFVQFQDGDVPFDYICGASDTVLLFTSDAAMGFFCKMSDLAVRQRGGKSF 802

Query: 642 LKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             +    K   V   T     +A +  + +L++F+ D++  +S  GKG  + + +D    
Sbjct: 803 FIL-DGAKPLPVQVSTPLTGWIAALSSSGRLVVFTTDELRALSSGGKGTTIMALQDDEKL 861

Query: 699 DVICFKICEGLTWIDSAGRSYNRSEND-----LLGWLGKRGGVGS 738
            V    I      +   GR     E       +  +  +RG  G 
Sbjct: 862 -VAAVPISPNGVVVVGKGRGGKIQELLVGPRSIEDYRTRRGRKGR 905


>gi|153814923|ref|ZP_01967591.1| hypothetical protein RUMTOR_01138 [Ruminococcus torques ATCC 27756]
 gi|317500435|ref|ZP_07958659.1| DNA gyrase subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089558|ref|ZP_08338457.1| hypothetical protein HMPREF1025_02040 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847954|gb|EDK24872.1| hypothetical protein RUMTOR_01138 [Ruminococcus torques ATCC 27756]
 gi|316898190|gb|EFV20237.1| DNA gyrase subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404926|gb|EGG84464.1| hypothetical protein HMPREF1025_02040 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 747

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 216/763 (28%), Positives = 372/763 (48%), Gaps = 51/763 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   +
Sbjct: 3   SESQIIRTEYSDLMKKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDKPY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 63  RKCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMVLVDGHGNFGSIEGDGAAAMRYT 122

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+T+  + + L  +D+D VDF   ++E + EP+V P + PNLL NG  GIAVGMATSI
Sbjct: 123 EARLTKFTQEVCLADLDKDVVDFGPNFDETEKEPLVLPMRVPNLLVNGAEGIAVGMATSI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A I N  I+ ++L++YI GPDFPTGGI+V +++ ++  Y  G+G  +
Sbjct: 183 PPHNLGEVIDAVKAYIKNDSITTKQLMKYIKGPDFPTGGIVV-NKDDLINIYETGQGKIK 241

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAED 308
           VR +   EE+  G   +V++EIPY +  +   + +  +A L+  K+   + DI ++S+++
Sbjct: 242 VRGKVETEELKGGKKQLVISEIPYTMIGAGIGKFLNDVAGLVETKKTTDITDISNQSSKE 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  D + L   ++  + +E  F +   +      P+ + L  I++  +  R
Sbjct: 302 GIRIVLELKKGADVENLKNMLYKKTRLEDTFGV-NMLAVADGRPETLGLKKIIEHHVDFR 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------ 422
            E+  R+    +     + E+ +GL+ A   ID II I+R     K       +      
Sbjct: 361 FELATRKYKTLLAKEQEKSEVQEGLIKACDVIDLIIEILRGSKSVKDAKACLVNGVTDNI 420

Query: 423 ---------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                           TE Q  AIL +RL  L  LE   + +E +  +    + + +LN+
Sbjct: 421 KFKSSISKKMAVLLRFTERQAAAILEMRLYRLIGLEVQALIAEHEQTVKNIARYEDILNN 480

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                  I  E+   KE ++K+     RRT       A++A  ++  IE++ +  ++   
Sbjct: 481 YDSMAQVIVEELESFKEEYAKA-----RRTVI---ENAEEAVFEEKKIEEQEVVFLMDRF 532

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           G+ R +     + +       +     +H   T +I + +  GK + +   +L  G+   
Sbjct: 533 GYARIVDVAVYERNKEAADSENK--YIVHCMNTGKICIFTNSGKMHQVKVIDLPYGKFRD 590

Query: 588 EAIQLLIDLNH---NQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           + + +    N+   ++ IV+ +  +      LL  +++G    V  SE     R      
Sbjct: 591 KGVPIDNVSNYSSSDEQIVSVYDSEQMRFAMLLFSTAQGMVKKVSGSEFQVAKRT-ILAT 649

Query: 643 KVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISD 699
           K+  E+ +  V  V  + HV +  +N   L F   ++P   +   GVR     K   +  
Sbjct: 650 KLQEEDSLVDVRVVNENKHVVLQTKNGYFLRFPATEVPIKKKAAVGVRGIRLQKKDELEK 709

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           V  F+       + +      +  +       KR G G+   K
Sbjct: 710 VYLFEEGTETKILYNE-----KEVSLNRLKTAKRDGAGTKARK 747


>gi|33864544|ref|NP_896103.1| putative DNA topoisomerase chain A [Synechococcus sp. WH 8102]
 gi|33632067|emb|CAE06520.1| putative DNA topoisomerase chain A [Synechococcus sp. WH 8102]
          Length = 824

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 232/764 (30%), Positives = 383/764 (50%), Gaps = 42/764 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V++++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVESIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   +L+ + +D VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPIAHQALLEEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALI  PE+S  KLLE I GPDFPTGG ++ S   + ++Y +GRG  
Sbjct: 181 IPPHNLGEVVDGLVALIRQPELSDSKLLELIPGPDFPTGGEVLLS-SGLRDTYLVGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV  G        +VVTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGIAHIEEVQPGKGHHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DP  ++  +   + +++ F   +  L     P+ + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPAKVLADLQRRTALQSNFGAILLALVD-GQPRQLSLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            +R   L RR+S  ++  + R+E++ GL+ A  N+  +I +I+            + R  
Sbjct: 359 DYRELTLIRRTSHALRKTEDRLEVVDGLITALNNLQAVITMIQEARDAASARASLMVRLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ EL+ L AE+E++  LL++  Q  + +  E++ +
Sbjct: 419 LSERQADAVLAMPLRRLTGLEQESLRQELEELQAERERLRLLLDNRDQLLDAMVQELKGL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE-------------PITVVISNRGW 529
           K+ FS       RRT   E   A  A    +                     ++I   G 
Sbjct: 479 KKRFSTP-----RRTRLVEGGDALMAERAASQRPNTELLRQQALEALPADARLLIQADGQ 533

Query: 530 IRSLKSHSVDLSALHFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLPA-GNLLSG 583
           ++ +    +    L             ++ L    + R+L +S  G+   +         
Sbjct: 534 VKVMSPPVLGRMHLSEPCAVGDHPSPAQVILPIEPSPRLLGVSASGRVALVRWEFAGQQP 593

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEIIANTRKGKTFL 642
               + +   +D +    I+   V D T   L ++SS G    +  ++++  + +  + +
Sbjct: 594 GSLEKFLPSGLDGDPLIAILELPVGDGTEFSLGLLSSDGRFKRLPLADVLDLSGRATSVV 653

Query: 643 KVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQS-YKDGGI 697
           K+     +   V       + +V    +LL   ++   +P+M R  +G           +
Sbjct: 654 KLKEGLSLCSAVICREHSDLVLVSSMGRLLRLPVNDSVLPKMGRLAQGPMTMRLLPGEEL 713

Query: 698 SDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
              +   + E   T +  + +      +       +RG +G + 
Sbjct: 714 VGSLSIDVAETDPTLLLVSRKGQMTRIDLTPLRRCQRGDLGIMA 757



 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI-QLLIDLNHNQDIVTAFVY 608
           SL  A+       ++L+S+ G+   LP  + +  +    A   + + L   +++V +   
Sbjct: 660 SLCSAVICREHSDLVLVSSMGRLLRLPVNDSVLPKMGRLAQGPMTMRLLPGEELVGSLSI 719

Query: 609 D---STCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA- 662
           D   +   LL+VS KG    ++ + +    R   G   + +S+ ++  +    +GD +A 
Sbjct: 720 DVAETDPTLLLVSRKGQMTRIDLTPLRRCQRGDLGIMAVVLSA-DEDSVAGLCSGDSLAG 778

Query: 663 VVGENRKLLIFSIDQI 678
           +V + ++        +
Sbjct: 779 IVTDQKRHGRLDASAV 794


>gi|166030881|ref|ZP_02233710.1| hypothetical protein DORFOR_00561 [Dorea formicigenerans ATCC
           27755]
 gi|166029148|gb|EDR47905.1| hypothetical protein DORFOR_00561 [Dorea formicigenerans ATCC
           27755]
          Length = 746

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 206/762 (27%), Positives = 358/762 (46%), Gaps = 51/762 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MQDSQIIRTEYSELMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMALVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TEAR+ ++ +   L  +D++ VDF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TEARLAKITQEAYLADLDKNIVDFMPNFDETEKEPEVLPVRVPNLLINGADGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A  A + + +IS ++L++ I GPDFPTGGI+V +++ ++E Y  G G  
Sbjct: 181 IPPHNLAEVIDAVEAYMKHEDISTKQLMKCIKGPDFPTGGIVV-NKDDLLEIYESGAGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAE 307
           +VR +  VEE+  G   +V+TEIPY +  +   + +  +  L+  K+   + DI + S++
Sbjct: 240 KVRGKVEVEEMKGGKKRLVITEIPYTMIGAGIGKFLNDVCALVETKKTNDIVDISNMSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +   +      P+ M L  I++  +  
Sbjct: 300 EGIRIVIELKKGADVENLTNMLYKKTRLEDTFGV-NMLAVADGRPETMGLKKIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------- 419
           + E+  R+    +     R EI +GL+ A   ID II I+R                   
Sbjct: 359 QFELATRKYKTLLAKERDRKEIQEGLIKACDVIDLIIEILRGSQSVADARACLTQGITEN 418

Query: 420 -------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                            TE Q +AIL +RL  L  LE   +  E +  L    + + +LN
Sbjct: 419 IKFKSGISRKMAAMLRFTERQANAILEMRLYKLIGLEIEALMKEHEETLKNIARYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I  ++   K+ ++      R+R T  E  +      ++   ++    +    
Sbjct: 479 NYDSMAEVIIEDLEHFKKEYA------RKRRTVVENGQEAVYEEKKVEEQEVVFLM---- 528

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
             +  +                   K  ++   T ++ + +  GK + +   +L  G+  
Sbjct: 529 DRFGYAKTVDVATYERNKEAADAENKWIVNCINTGKLCVFTNTGKMHQIKVLDLPYGKFR 588

Query: 587 GE--AIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
            +   I  + + +  Q++V  ++ D       KLL  + +G    V+ +E     R    
Sbjct: 589 DKGQPIDNVSNYDSTQEMV-VYMCDELQLRYAKLLFATKQGMIKKVKGNEFQVAKRT-IA 646

Query: 641 FLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
             K+  ++++  V  +T D HV +  ++   L FS  ++ E  +   GVR    +     
Sbjct: 647 ATKLQEDDELISVQVITDDQHVVLQTKDGYFLRFSAQEVAEKKKAAVGVRGIKLRKNDEL 706

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           + I          I    R    +       + KR G G+  
Sbjct: 707 EQIYLFYEGTEHKISYGDRELTLN----RLKVAKRDGTGTKA 744


>gi|260429086|ref|ZP_05783063.1| DNA topoisomerase IV, A subunit [Citreicella sp. SE45]
 gi|260419709|gb|EEX12962.1| DNA topoisomerase IV, A subunit [Citreicella sp. SE45]
          Length = 807

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 308/808 (38%), Positives = 432/808 (53%), Gaps = 64/808 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++I +   +   NV    LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM  
Sbjct: 2   NDIVDDPNMNPRNVAE-PLRRAIGERYLTYALSTIMNRALPDARDGLKPVHRRILYAMRR 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT +AE +L+G+DED+VDFR  Y+    EP V P+ +PNLLANG SGI
Sbjct: 121 DNPAASRYTEARMTIMAEALLEGLDEDSVDFRPNYDGRLEEPTVLPASYPNLLANGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A L LI  P+   E LL Y+ GPDFPTGG+IVE RE+I E+Y
Sbjct: 181 AVGMATNIPPHNIGELIDACLHLIKTPDARDETLLNYVPGPDFPTGGVIVEPRENIAEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG  R+RA+W VE++GRG W  VVTEIPYQVQKS+L+E++AELI  K++P+L DIRD
Sbjct: 241 RTGRGSIRLRAKWEVEDLGRGMWQAVVTEIPYQVQKSKLVERLAELIQTKKVPILADIRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAEDVR+VL PK +++DPD+LM  +F  SD+E RF LNMNVL  G  P+V  L  +L+ 
Sbjct: 301 ESAEDVRMVLEPKTKNVDPDVLMNMLFRNSDLEIRFSLNMNVLIDGLTPKVCSLKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-----PKPVMV 418
           +L  RR+VL RRS  RM  ID R+E+L+GL+IA+LN+D +I IIR +D            
Sbjct: 361 FLDFRRDVLCRRSRHRMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMYEDWS 420

Query: 419 SRFSLTENQVDAILNLRLRSL-RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                T ++     +     L   ++  +++ + + +       +    +  Q++   + 
Sbjct: 421 KPHQATISRATDDSDYVSPLLGVDVKALELRPDPEAVARGVLADEGGPGTIPQRFGGRSE 480

Query: 478 EIREVKEI-FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE---PITVVISNRGWIRSL 533
            + +V+            RR    E+       +++    ++      +           
Sbjct: 481 GLSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASDELQWKRISEQLRE 540

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S            S   A  A       ++  +           +        +   
Sbjct: 541 VKKSFAKDLDRGARLTSFAEAGEAEEVPLEAMIEREPITVVCSQMGWIRAMTGHIDLNRE 600

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           +           F  ++T KLLV  + G  + +  + +      G   +  + + +E ++
Sbjct: 601 LKFKDGDGPRFVFHAETTDKLLVFGTNGRFYTLAAASLPGGRGMGEPLRLMVDLPNEAEI 660

Query: 651 -----------KLVVKVTGD-------HVAVVGENR------------------------ 668
                       LV    GD        V                               
Sbjct: 661 LDIFIHQPDRRLLVASSAGDGFVVPEAEVLAQTRAGKQVLNVKDGVKAKVCKPVSGDAVA 720

Query: 669 ------KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
                 K+L+F  D++PEM RGKGVRLQ YKDGG+SDV  F + +GL+W D AGR   R+
Sbjct: 721 VVGENRKVLVFMADELPEMGRGKGVRLQKYKDGGMSDVTTFTLTDGLSWRDPAGR--TRT 778

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           E +L  W+GKR   G + P+GFPR   F
Sbjct: 779 ETNLEEWIGKRATSGRMAPRGFPRDNTF 806


>gi|257068609|ref|YP_003154864.1| DNA topoisomerase IV subunit A [Brachybacterium faecium DSM 4810]
 gi|256559427|gb|ACU85274.1| DNA topoisomerase IV subunit A [Brachybacterium faecium DSM 4810]
          Length = 822

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 230/776 (29%), Positives = 367/776 (47%), Gaps = 43/776 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  VEE +  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MSEMGL   
Sbjct: 17  DDAVEETIVDIDVTSEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLRPE 76

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
               KS R+VGEV+GKLHPHGD ++YD+LVR+AQ F  R PL+ G GNFG++D    AA 
Sbjct: 77  KGHVKSQRVVGEVMGKLHPHGDTAIYDALVRMAQSFNMRLPLVDGHGNFGSLDN-GPAAP 135

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+   A L+   +DED VD    Y+ +  +P V P+++PNLL NG SGIAVGMAT
Sbjct: 136 RYTEARLAPAALLMTDSLDEDVVDMVPNYDNQLLQPEVLPAQYPNLLVNGASGIAVGMAT 195

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           ++  HN+ E   AA  LID+PE  +E+L+ ++ GPD PTGG IV   + I ++YR GRG 
Sbjct: 196 NMAPHNLVETIAAARHLIDHPEAELEELMRFVPGPDLPTGGRIV-GLDGIRDAYRTGRGS 254

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
           F++RA   +E V      IVVTE+PYQV   RL EK+ + + +K++  + D +D +    
Sbjct: 255 FKMRATTRIENVTSRRKGIVVTELPYQVGPERLAEKLRDAVQSKKVQGITDYQDLTDRHH 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++       DPD ++  ++  + +E  F +N   L     P+ + L  +L+ ++ HR
Sbjct: 315 GLRLVLTVKSGFDPDAVLAQLYKFTPLEESFGINNVALVD-GQPRTLGLKQMLEVFVGHR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            EV+ RR+  R+     R+ +++GLL+A ++IDE+I I+R  D     +  ++  F LT+
Sbjct: 374 LEVVRRRTEHRLGKRRARLHLVEGLLLAIVDIDEVIQIVRQSDDAEIARTRLMQVFDLTQ 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL LRLR L +  +  +++E D+L  E E+++ +L S       ++ E+  V   
Sbjct: 434 VQAEYILELRLRRLTRFSQIDLEAERDDLRREIERLEEILGSETVLRALVSEELAAVAAE 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKAT-LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
                    RRT   E +            +  EP  V+++  G I  +           
Sbjct: 494 HGD-----SRRTVLLEAAEKPAVVAGASLEVADEPCHVLLTGTGLIARVTGEEPVPREGP 548

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA--------IQLLIDL 596
               D +   +H+ T   + +++  G+   L   +L S      A        +  LIDL
Sbjct: 549 RGSHDVIVAGVHSTTRSEVGVVTDRGRVLRLSVVDLPSLAPTHGAPSLAGGTRLADLIDL 608

Query: 597 NHNQDIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             ++  +               + + +  G    V+          G   + +   + + 
Sbjct: 609 ERDEHALGLIRLAEADIARGGGIALGTRHGVVKRVQPE---FPRSDGFEIISLKDGDAVV 665

Query: 652 LVV---KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKIC 706
            VV         +A +  + +LL F    +    RG  GV       G  +       + 
Sbjct: 666 GVVDLEDDEDLDLAFITSDAQLLHFPSSGVRPQGRGAGGVAGIKLAAGAHVLSFGAIDVT 725

Query: 707 EGLTWIDSAGR---------SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +  AG             +  +        R   G    +        + +
Sbjct: 726 APADVVTVAGSSSTLPLLQTGSLKVTSLTEFPAKGRATAGMRCHRFLRGEDTLIGA 781


>gi|260435822|ref|ZP_05789792.1| DNA gyrase subunit A [Synechococcus sp. WH 8109]
 gi|260413696|gb|EEX06992.1| DNA gyrase subunit A [Synechococcus sp. WH 8109]
          Length = 822

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 244/777 (31%), Positives = 391/777 (50%), Gaps = 48/777 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVEPIALHREMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++   +L+ + ED VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPISHQAMLEEIGEDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ E  +ALI  PE+S EKLLE I GPDFPTGG ++ S   + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVEGLIALIRKPELSDEKLLELIPGPDFPTGGEVLIS-SGLRDTYLHGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R     EEV  G        +VVTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHTEEVQPGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DP+ +++ +   + +++ F   +  L  G+  Q + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPENVLKDLQRRTALQSNFGAILLALVDGQP-QQLSLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R   L RR+S  ++  + R+E+++GL+ A  N+  +IA+I+  +     +  ++ R  
Sbjct: 359 DFRELTLIRRTSHALRKTEDRLEVVEGLISALNNLQAVIAMIQEANDAASARASLMVRLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ ELD L AE++++  LL++  Q  + +  E++ +
Sbjct: 419 LSERQADAVLAMPLRRLTGLEQESLRQELDELRAERQRLKLLLDNRDQLLDAMVTELKAL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE-------------PITVVISNRGW 529
           K+ FS       RRT   E   A  A    +                     V+I   G 
Sbjct: 479 KKRFSTP-----RRTRLVEGGDALMAERAASQRPNTELLRQQALAALPGDGRVLIQADGQ 533

Query: 530 IRSLKSHSVDLSALHFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           ++ +    +    L+            ++ L      R+L +S  G+   +        +
Sbjct: 534 VKIVTPQVLGRLHLNDPCPIGDAPSPARVILPIEPPPRLLAVSARGRIAQVR-WEFAGQQ 592

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                  L   L+    IV+             L ++SS G    +  SEI+  + +  +
Sbjct: 593 PGPIDRFLPTGLD-GDPIVSLLSLPSQNIDNLSLGLLSSDGRFKRLPLSEIVDLSGRATS 651

Query: 641 FLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG 696
            LK+    ++   V       +A++ +  +LL   + +  +P M R  +G        G 
Sbjct: 652 VLKLKEGVELNSAVICRDQGTLALISDIGRLLRLRVTEDSLPLMGRLAQGPMTMRLLPGE 711

Query: 697 -ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            I   +C    E    +    +      +       +RG +GS+  +    S + + 
Sbjct: 712 HIVGAVC---TEQTPLMLITRQGMIGRIDYSGLRYNQRGDLGSMALQIDAESDRLVG 765


>gi|312871702|ref|ZP_07731790.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311092644|gb|EFQ51000.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 831

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 220/769 (28%), Positives = 394/769 (51%), Gaps = 32/769 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG ++   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGG-LIIGNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKTQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNM-APVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR     K     +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L         ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F  +     RRT   E  +      ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 FGSA-----RRTQIVEQYK-KIEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P         R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLIFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 T------GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG--ISDVICFKIC- 706
                   + + +V  N   L F ++++P +  R  GV+  + K+    +   I F    
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 707 -EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              L       R   +     L     R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPHRIVAA 762


>gi|327542615|gb|EGF29088.1| DNA gyrase subunit A [Rhodopirellula baltica WH47]
          Length = 825

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 253/789 (32%), Positives = 394/789 (49%), Gaps = 61/789 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ + LRFA ++RYL Y+LS I  RA+PD+RDG KPV RRI++ MS+  LD  A  +K 
Sbjct: 30  EIQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRILYTMSQQRLDATAKHRKC 89

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VG+V+G  HPHGD S+Y++LVR++Q F  R P+I G GNFG+IDGD+AAA RYTE R
Sbjct: 90  AKVVGDVMGNYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNAAAMRYTECR 149

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT +A  +L  +    V F+  Y+    EPVV PS+ P+LL NG +GIAVGMAT+IP HN
Sbjct: 150 MTPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGMATNIPPHN 209

Query: 196 VQEICEAALALIDNPEISIEKLL--EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           ++E+C A L L+ NPEI   +L+  + I GPDFPTGG I  ++E + E Y  G G  ++R
Sbjct: 210 LKEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYATGTGTIKLR 269

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
               V E  R    + +TEIP+ V K+ ++E+IAEL+ + ++PL++++RD S ED+R+ L
Sbjct: 270 GVAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLSTEDIRVDL 329

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-----RVPQVMPLDGILKEWLAHR 368
             K  + D D ++  ++  + ++T F +N+  L+         P+ + L  IL  +L  R
Sbjct: 330 LLKKNA-DADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEILWYFLHFR 388

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF------- 421
            +VL  R +  ++A+++R+ IL+GL + +  +DEII IIR+ +                 
Sbjct: 389 LDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKIMKRFPVKE 448

Query: 422 --------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                          L   Q DAIL L+L  L +LE   +  EL       ++I+ LL  
Sbjct: 449 LTPAQARRKTRASNGLDAEQTDAILELKLYRLARLEINVVLDELKKKRKRVDEINKLLAD 508

Query: 468 GKQ------QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
            +       +W  I  E++ +   +   T  GRRR+T   V   +    ++  I  E   
Sbjct: 509 DRDDYTSSGRWAIIKEELQSLISDYGN-TPAGRRRSTIV-VPTEEVEYTEEDFIVAEDCH 566

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V+++  GW++  K    D S    ++GD++   +  +T   +   S+ G  YT    ++ 
Sbjct: 567 VMVTVDGWVKRQK-QIADPSKSRLRQGDAVLACVAGNTRTTLAFFSSLGVCYTARMIDIP 625

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDS-----------TCKL-----LVVSSKGNAFI 625
           +  G GE IQ L      + I+ A   D                     L  S+ G A  
Sbjct: 626 ASTGFGEPIQKLFKFKDGERIIAALSMDPRILGDISEDPKGNYYPATHALAASTDGYALR 685

Query: 626 VEESEIIAN-TRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM-S 682
                     TR G+ F +V     +  VV + G   V  V  + + ++   D+I  +  
Sbjct: 686 FGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTETVLAVSADARAMVCPADEINYLSG 745

Query: 683 RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            GKGV L                 +         R   ++ +        RGG G     
Sbjct: 746 AGKGVLLLKLAASDKLLGFKPSTGDRDLLNVVTNRGAKKTVSTAKYRTTSRGGRGI---- 801

Query: 743 GFPRSGKFL 751
              ++GK  
Sbjct: 802 ELQKNGKIA 810


>gi|332527919|ref|ZP_08403953.1| DNA topoisomerase IV subunit A [Rubrivivax benzoatilyticus JA2]
 gi|332112493|gb|EGJ12286.1| DNA topoisomerase IV subunit A [Rubrivivax benzoatilyticus JA2]
          Length = 771

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 264/768 (34%), Positives = 412/768 (53%), Gaps = 52/768 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA----AFKKS 75
           ++L    E  YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +         KS
Sbjct: 16  LTLADYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYAMHRMGLGYNGNVGAKPVKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G+ HPHGD + YD++VR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTEAR
Sbjct: 76  ARVVGDVLGRYHPHGDTAAYDAMVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRYTEAR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  +A L+L  +DE  VDF+  Y+    EP   P++ P +L NG SGIAVG+AT IPSHN
Sbjct: 136 LAPIARLLLDEIDEGTVDFQPNYDGSTQEPRQLPARLPFVLLNGASGIAVGLATEIPSHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  AA+ LI +P ++ + L   + GPDFP GG I+ S   I  +Y  GRG  +VRAR
Sbjct: 196 LREVAAAAVELIRDPALADDALYTLLPGPDFPGGGQIISSAAEIRAAYASGRGSLKVRAR 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE----------- 304
           W +E++ RG W +VV E+P      R++E+I EL   K  P  + +  E           
Sbjct: 256 WTIEDLARGQWQLVVNELPPGTSAQRVLEEIEELTNPKLRPGKKALTQEQQQLKQTVLAV 315

Query: 305 ---------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
                        VR+V  PK+R++    L+ ++   + +E   P+N+ ++     P   
Sbjct: 316 LDAVRDESSKDAPVRLVFEPKSRTVSQQDLITTLLANTSLECNSPVNLTMVGADGRPTQK 375

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  +L+EW+  R++ + RR+  R+  +  R+ +L+G  +  LNIDE+I IIR  D+P+ 
Sbjct: 376 SLRQMLEEWIGFRQQTVQRRTRHRLDKVLERIHVLEGRQLVLLNIDEVIRIIRESDEPRA 435

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            +++RF+L+E Q D IL+LRLR L +LE  +I+ EL  L   + +++ +L S       +
Sbjct: 436 ALIARFNLSERQADDILDLRLRQLARLEAIKIEQELKELRETQARLEEILASPAVLKRTL 495

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             EI    +          RRT   E  RA      +  +  EP+TVV+S +GW+R+LK 
Sbjct: 496 IREIEADAKACGDE-----RRTLIQEERRAVA----EIRVVDEPVTVVVSQKGWVRALKG 546

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H V+ S L FK GD+L       + D +L+    G+ Y++   +L  GRG G  I  LI+
Sbjct: 547 HEVERSTLGFKAGDALYATFACRSVDTLLVFGDRGRVYSVAVSSLPGGRGDGVPITTLIE 606

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK--LV 653
           L     I   +   +   LL+ +S G   + +  ++    R GK+FL + + E+      
Sbjct: 607 LEAGTAIAHYWAGAADTTLLLANSGGFGLLAKAGDLHGRQRAGKSFLTLEAGERPLEPWA 666

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
           V     + A +  + +LL++ +D++    + G+G+ L        + ++    C     +
Sbjct: 667 VAAGQTNAACLAADGRLLVYPLDELKHQPNGGRGLTLMDV--DAATPLVAVAACAQSVLV 724

Query: 713 DSAGRSYNRSENDLLGW-------LGKRGGVGSLVPKGFPRSGKFLSS 753
             +GR       D           +GKR   G  + +GF +    +++
Sbjct: 725 VGSGRGGKAR--DEEIRNSAFTSCIGKRARKGRKL-EGFQK----VAA 765


>gi|229820420|ref|YP_002881946.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
 gi|229566333|gb|ACQ80184.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
          Length = 819

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 225/785 (28%), Positives = 363/785 (46%), Gaps = 52/785 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +    +E +  + +   +++ +L YA S I  RA+PD RDG KPV RRI++ M++MGL  
Sbjct: 6   APPPADERIVDIDVAEEMQDSFLEYAYSVIYARALPDARDGLKPVQRRILYQMADMGLRP 65

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
                KSAR+VGEV+GKLHPHGD ++YD+LVR+AQ F  R PL+ G GNFG++D D  AA
Sbjct: 66  DRGHVKSARVVGEVMGKLHPHGDTAIYDALVRMAQAFSLRLPLVDGHGNFGSLD-DGPAA 124

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A ++  G+DED VDF   Y+ + ++P V PS  PNLL NG SGIAVGMA
Sbjct: 125 PRYTEARLAPAALVMTGGLDEDVVDFVPNYDNQLTQPEVLPSAMPNLLVNGASGIAVGMA 184

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++P HN+ E+  AA  LI +P+  +E L+ ++ GPD P GG IV   + + ++Y  GRG
Sbjct: 185 TNMPPHNLVEVIAAARHLIAHPDADLEALMRFVPGPDLPGGGKIV-GLDGVRDAYVSGRG 243

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
            FR RA   VE +      IVVTE+PY V   R+ EKIAE + +K++  +  ++D +  +
Sbjct: 244 SFRTRATARVENLTPRRRGIVVTELPYLVGPERVTEKIAEAVRSKKVQGVAGVQDLTDRQ 303

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++       +P+ ++E ++  + +E  F +N   L  G  P+ M L  +L  ++ H
Sbjct: 304 HGLRLVIEVKSGFNPEAVLEQLYRATPLEESFGINNVALV-GGQPRTMGLRELLTVYVEH 362

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R  V  RRS +R++    R+ +++GLLIA  +IDE+IA+IR+ D     +  +V+ F L+
Sbjct: 363 RLVVTRRRSEYRLRRRSERLHLVEGLLIAIADIDEVIAVIRSSDDAAQARERLVAVFDLS 422

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q D IL L+LR L K    ++ SE D L  E  ++  LL    +    ++ E+ +V  
Sbjct: 423 TPQADYILELQLRRLTKFSRIELTSERDELQREIAELTELLGDPARLRALVSDELAQVAN 482

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMI-----------EKEPITVVISNRGWIRSL 533
                     RRT   E + A  A    A                P  V++S  G +   
Sbjct: 483 QHGTP-----RRTVLLESAGAPAAAAAAAPTSGRAGAVPLEIPDTPCWVLLSATGLLART 537

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA---- 589
              +  +        D++  ++ A     + L+++ G+   +   +  +           
Sbjct: 538 GDDARPVREGRRAAHDAILGSVPATARGEVGLVTSRGRIVRVNVLDAPALPPTDGPPSLS 597

Query: 590 ----IQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEIIANTRKGKT--FL 642
               +  L+ L   +  +T          L + ++ G    V          KG     +
Sbjct: 598 GGVGVGELVALEPGERPLTLAALGPDAPALALGTASGVVKRVSPEA----PAKGDAWEVI 653

Query: 643 KVSSEEKMKLVV-KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            +   +++         D V  V  + +LL F    +    R   G+          +  
Sbjct: 654 ALKDGDQVVGAATAADDDEVVFVTSDAQLLRFRAASVRPQGRAAAGMAGVRLAGDVRAVA 713

Query: 701 ICFKICEG------------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                 +                +        +           RG  G    +      
Sbjct: 714 FAAVAHDDVSTAVVVTVAGSSDALPGTAAGSAKVTPLDRFPAKGRGTGGVRAQRFLRGED 773

Query: 749 KFLSS 753
             + +
Sbjct: 774 AVVLA 778


>gi|309805614|ref|ZP_07699656.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|308165052|gb|EFO67293.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           09V1-c]
          Length = 831

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 220/769 (28%), Positives = 394/769 (51%), Gaps = 32/769 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +  + LI +P+  I++L+ YI GPDFPTGG ++   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDVLIYLIKHPDAKIDELMTYIKGPDFPTGG-LIIGNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNM-APVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR     K     +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L A       ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F  +     RRT   E  +      ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 FGSA-----RRTQIVEQYK-KIEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P         R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 T------GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG--ISDVICFKIC- 706
                   + + +V  N   L F ++++P +  R  GV+  + K+    +   I F    
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 707 -EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              L       R   +     L     R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPHRIVAA 762


>gi|311113428|ref|YP_003984650.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
 gi|310944922|gb|ADP41216.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
          Length = 842

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 218/785 (27%), Positives = 363/785 (46%), Gaps = 59/785 (7%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
               + +    + EN+  + +   +E  +L Y+ S I  RA+PD RDG KPV RRI++ M
Sbjct: 5   SKSAVEDYPVDIVENIVDIDVSAEMESSFLEYSYSVIYSRALPDARDGLKPVQRRILYMM 64

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            +MGL       KSAR+ GEV+GKLHPHGD ++YD++VRLAQ F  R PL+ G GNFG++
Sbjct: 65  QQMGLRPDKGHVKSARVTGEVMGKLHPHGDAAIYDAMVRLAQSFAMRLPLVDGHGNFGSL 124

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           D D  AA RYTEARM   A  +   +DED VDF   Y+ +  +P V P+ FPNLL NGT+
Sbjct: 125 D-DGPAAARYTEARMAPAATALTADLDEDVVDFVPNYDNQFMQPGVLPAAFPNLLVNGTT 183

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT++  HN++E+      LI +P+ ++++++++I GPD P+GG IV     I +
Sbjct: 184 GIAVGMATNMAPHNLREVIAGTRHLIAHPDATLKEIMKFIPGPDLPSGGTIV-GLSGIKD 242

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG F+ RA+  +E+V      IVVTE+PY V   ++IEKI + + AK++  + D+
Sbjct: 243 AYESGRGTFKTRAKVSIEQVTPRKQGIVVTELPYMVGPEKVIEKIKDGVNAKKLTGISDV 302

Query: 302 RDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            D +       ++       +P  ++ S++  + +E  F +N   L     PQ + L  +
Sbjct: 303 VDLTDRKHGLRLVIEIKNGFNPQAVLASLYKHTPLEDSFGINNVALV-NGQPQTLGLLDL 361

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L+ ++ HR  V+ RR+ FR+     R+ ++ GLLIA ++IDE+I IIR+ D+    +  +
Sbjct: 362 LRVYIDHRLSVVRRRTEFRLGKHKDRLHLVDGLLIAIVDIDEVIEIIRSSDETAQAREKL 421

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++ F LTE Q + IL LRLR L K    ++++E D L  E  +++ +L S       ++ 
Sbjct: 422 MAVFDLTEVQANYILELRLRQLTKYSRIELEAERDKLRQEIAELERILGSDSALRELVSD 481

Query: 478 EIREVKEIFSKST----DLGRRRTTFCE-----VSRADKATLQQAMIEKEPITVVISNRG 528
           E+ EV E +               +  E      S+A K+      I  EP  V+++  G
Sbjct: 482 ELAEVAEKYGNDRRTVLKTKDDMQSAIEAVSNGASKAKKSLGLALEIADEPCWVLLTASG 541

Query: 529 WIRS---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +            +      + D     +       I  +++ G+   L   +L+    
Sbjct: 542 ILGRTVGKPMREALVDPGKRIKHDVFTSIVPTTARGEIGAVTSTGRMVRLSVMDLVVFDD 601

Query: 586 HG--------EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
                          ++ L   + +V     +    L + ++ G    V     +  T  
Sbjct: 602 SSGTPVLTTGVKATEVVALAKGEKLVGLVPLNE--VLALATANGVIKRVNPEYPLNQTE- 658

Query: 638 GKTFLKVSSEEKMKLVVKVTGDHVA--VVGENRKLLIFSIDQIPE------------MSR 683
               +K+  ++ +      + D  A  +V +  KLL F   ++              +  
Sbjct: 659 -WDVIKLKPKDTVIAATVCSSDDNALTLVTQEAKLLTFDAAKVRPQGRAGGGIAGIKLG- 716

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN----RSENDLLGWLGKRGGVGSL 739
                        +  +           +            +           R   G  
Sbjct: 717 ---------AQDAVIALGVTAPGSAAEVVTVTNGQDGMASAKVTPLAEYPQKGRATGGVR 767

Query: 740 VPKGF 744
             +  
Sbjct: 768 AHRFL 772


>gi|300741347|ref|ZP_07071368.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
 gi|300380532|gb|EFJ77094.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
          Length = 842

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 218/785 (27%), Positives = 363/785 (46%), Gaps = 59/785 (7%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
               + +    + EN+  + +   +E  +L Y+ S I  RA+PD RDG KPV RRI++ M
Sbjct: 5   SKSAVEDYPVDIVENIVDIDVSAEMESSFLEYSYSVIYSRALPDARDGLKPVQRRILYMM 64

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            +MGL       KSAR+ GEV+GKLHPHGD ++YD++VRLAQ F  R PL+ G GNFG++
Sbjct: 65  QQMGLRPDKGHVKSARVTGEVMGKLHPHGDAAIYDAMVRLAQSFAMRLPLVDGHGNFGSL 124

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           D D  AA RYTEARM   A  +   +DED VDF   Y+ +  +P V P+ FPNLL NGT+
Sbjct: 125 D-DGPAAARYTEARMAPAATALTADLDEDVVDFVPNYDNQFMQPGVLPAAFPNLLVNGTT 183

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT++  HN++E+      LI +P+ ++++++++I GPD P+GG IV     I +
Sbjct: 184 GIAVGMATNMAPHNLREVIAGTRHLIAHPDATLKEIMKFIPGPDLPSGGTIV-GLSGIKD 242

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG F+ RA+  +E+V      IVVTE+PY V   ++IEKI + + AK++  + D+
Sbjct: 243 AYESGRGTFKTRAKVSIEQVTPRKQGIVVTELPYMVGPEKVIEKIKDGVNAKKLTGISDV 302

Query: 302 RDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            D +       ++       +P  ++ S++  + +E  F +N   L     PQ + L  +
Sbjct: 303 VDLTDRKHGLRLVIEIKNGFNPQAVLASLYKHTPLEDSFGINNVALV-NGQPQTLGLLDL 361

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L+ ++ HR  V+ RR+ FR+     R+ ++ GLLIA ++IDE+I IIR+ D+    +  +
Sbjct: 362 LRVYIDHRLSVVRRRTEFRLGKHKDRLHLVDGLLIAIVDIDEVIEIIRSSDETAQAREKL 421

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++ F LTE Q + IL LRLR L K    ++++E D L  E  +++ +L S       ++ 
Sbjct: 422 MAVFDLTEVQANYILELRLRQLTKYSRIELEAERDKLRQEIAELERILGSDSALRELVSD 481

Query: 478 EIREVKEIFSKST----DLGRRRTTFCE-----VSRADKATLQQAMIEKEPITVVISNRG 528
           E+ EV E +               +  E      S+A K+      I  EP  V+++  G
Sbjct: 482 ELAEVAEKYGNDRRTVLKTKDDMQSAIEAVSNGASKAKKSLGLALEIADEPCWVLLTASG 541

Query: 529 WIRS---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +            +      + D     +       I  +++ G+   L   +L+    
Sbjct: 542 ILGRTVGKPMREALIDPGKRIKHDVFTSIVPTTARGEIGAVTSTGRMVRLSVMDLVVFDD 601

Query: 586 HG--------EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
                          ++ L   + +V     +    L + ++ G    V     +  T  
Sbjct: 602 SSGTPVLTTGVKATEVVALAKGEKLVGLVPLNE--VLALATANGVIKRVNPEYPLNQTE- 658

Query: 638 GKTFLKVSSEEKMKLVVKVTGDHVA--VVGENRKLLIFSIDQIPE------------MSR 683
               +K+  ++ +      + D  A  +V +  KLL F   ++              +  
Sbjct: 659 -WDVIKLKPKDTVIAATVCSSDDNALTLVTQEAKLLTFDAAKVRPQGRAGGGIAGIKLG- 716

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN----RSENDLLGWLGKRGGVGSL 739
                        +  +           +            +           R   G  
Sbjct: 717 ---------AQDAVIALGVTAPGSAAEVVTVTNGQDGMASAKVTPLAEYPQKGRATGGVR 767

Query: 740 VPKGF 744
             +  
Sbjct: 768 AHRFL 772


>gi|170782025|ref|YP_001710357.1| DNA topoisomerase IV subunit A [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156593|emb|CAQ01744.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 848

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 219/767 (28%), Positives = 362/767 (47%), Gaps = 31/767 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M       +     E ++ V +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MSPSTTHTTPDEPSERIEDVDVSTEMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMGL       KSAR+ GEV+GKLHPHGD ++YD++VR+AQPF  R PLI G GNFG+
Sbjct: 61  MSEMGLRPDRGHVKSARVTGEVMGKLHPHGDSAIYDAMVRMAQPFTLRVPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +++G+DED VDF   Y+    +P V P+ FPNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALAMVEGLDEDVVDFVPNYDNAFMQPAVLPAAFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E+  AA  LID+P+ +++ L+ ++ GPD PTGG I+     + 
Sbjct: 180 SGIAVGMATNMVPHNLIEVVGAARHLIDHPDATLDDLMAFVPGPDLPTGGTII-GLSGVK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG F+ RAR  VE +      +VVTE+PY V   ++IEKI + +  K++  + +
Sbjct: 239 DAYLTGRGSFKTRARVSVESLTPRKSGLVVTELPYLVGPEKVIEKIKDGVQNKKLSGITN 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +       ++       +P+ ++E ++  + +E  F +N   L     PQ + L  
Sbjct: 299 VTDLTDRTHGLRLVIEIKTGFNPEAVLEQLYRYTPLEDGFSINNVALVD-GSPQTLGLKE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPV 416
           +L+ ++AHR +V+ RR+ +R+     R+ ++ GLLIA L+IDE+I +IR  D     +  
Sbjct: 358 LLQVYVAHRLDVVTRRTRYRLARRQERLHLVLGLLIAILDIDEVIQVIRGSDDTEQARAR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L+  Q D IL LRLR L +    +++ E D L AE  +++++L   ++    ++
Sbjct: 418 LMDVFDLSTLQADYILELRLRRLTRFSRIELEEERDRLQAEIAELEAILADPRRLRALVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E++EV + F                  + +       I   P  V++S  G    +   
Sbjct: 478 TELQEVADRFGTPRRTLLTEAAPSVAGASSRRAAPVLEIADVPCRVLLSTTGRAVRVDLP 537

Query: 537 SVDLSALHFKEGDSLKI----ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +            S       A+   +  RI  ++  G+  T+   +L         +  
Sbjct: 538 TDAPGTPLQTVRRSSHDAVLTAIETTSRTRIGAITNTGRLITMTPVDLPVVPVASVQLGA 597

Query: 593 LIDL-------NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            + +       +  + +V      +   + + + +G    V  S + A        + + 
Sbjct: 598 GVRIRDYLGLTDRKERVVALVALGTDEAIALGTRQGVVKRVAPSALPAKPEY--EVIALK 655

Query: 646 SEEKMKLVVK-VTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICF 703
             +++    +    D +  V    +LL F    +     +  G+   +   G        
Sbjct: 656 KGDEVVGARQGAETDELVFVTSEAQLLHFPAVSVRPQGVQAGGIAGVNLGAGAHVLFFSS 715

Query: 704 KICEGLTWIDSAGR---------SYNRSENDLLGWLGKRGGVGSLVP 741
              EG   +  +              +           R   G    
Sbjct: 716 VAPEGAEVVTVSASSATIAGVDPGRAKVSAFGDFPRKGRATGGVRAH 762


>gi|295395841|ref|ZP_06806029.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971376|gb|EFG47263.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 854

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 223/761 (29%), Positives = 366/761 (48%), Gaps = 41/761 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +++  V +   +E  +L YA S I  RA+PD RDG KPV RRII+ M +MGL      
Sbjct: 1   MADHIVDVDVSQEMESSFLEYAYSVIYSRALPDARDGLKPVQRRIIYQMGDMGLRPDRPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KS+RIVG+V+GKLHPH D ++YD+LVRL+Q FV R PL+ G GNFG +D D  AA RYT
Sbjct: 61  VKSSRIVGDVMGKLHPHSDVAIYDALVRLSQDFVMRVPLVDGHGNFGTLD-DGPAAPRYT 119

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  ++ G+DED VDF   Y+   ++P V PS FPNLL NG SGIAVGMAT++ 
Sbjct: 120 EARLDDAALTMIAGLDEDVVDFVPNYDNSLTQPEVLPSAFPNLLVNGASGIAVGMATNMA 179

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+  AA  LI+NP+ ++ +L+ Y+ GPD PTGG I+   +SI E+Y  GRG FR 
Sbjct: 180 PHNPGEVIAAARHLIENPQATVSELMRYVPGPDLPTGGRII-GLDSIREAYETGRGTFRT 238

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA    E +      IVVTE+PY V   R+IEK+ + + AKR+  +  I D S       
Sbjct: 239 RATVKFENITARRKGIVVTELPYLVGPERVIEKVKDQVQAKRLTGIASIDDYSDRKHGLR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       +P+ ++E ++ L+ ME  F +N   L     P+ + L  +L+ ++ HR  +
Sbjct: 299 LVIGIKNGFNPEAVLEELYRLTPMEDSFGINNVCLV-EGQPRTLGLKPLLEVFVDHRISI 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
             RR+ F++     R+ +++GLLIA L+IDE++ +IR+ D     +  ++  F L+E Q 
Sbjct: 358 TRRRTVFQLGKAKDRLHLVEGLLIAILDIDEVVQLIRSSDDATQARTRLMDVFDLSEIQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+L+LR L K    ++++E D L +  E +  +L+   +    ++ E++E  +    
Sbjct: 418 TYILDLQLRRLTKFSRIELEAERDELKSRIEYLQGILDDDDKLRALVSDELQETSDRIDS 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMI---EKEPITVVISNRGWIRSLKSHSVDLSALHF 545
                 RRT   E +  +    ++        EP  V+ S    +          +    
Sbjct: 478 P-----RRTVLVEGNLKELRAAKKGTKLTVADEPCWVLFSTSQRLARTTGQEPLSAQGRR 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--------GEAIQLLIDLN 597
              D+L   +   +   I  ++  G+   +   +L              G  +     L 
Sbjct: 533 ASHDALVSQIATTSRSTIAAVTNTGRVVGVDVVSLPQLPPQAARPTVAGGVRVSEYFTLE 592

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK-- 655
            N+ ++     D   + +V + +G    +  ++     + G T + +  ++++  + +  
Sbjct: 593 KNEKVIGLI--DPERECVVGTKQGVIKRINGNDQF---KDGSTLINLKPKDEIVGLAQPE 647

Query: 656 -VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWI 712
            +       +  N +LL F ++ +        GV       D  +         +    +
Sbjct: 648 DLNTHSAVFITSNAQLLAFDLEGVRAQGYAASGVAGIRVASDAHVIGFYAVDSHQPNQVV 707

Query: 713 DSAG--RSYNRSE------NDLLGWLGKRGGVGSLVPKGFP 745
             A       +        +        RG  G    +   
Sbjct: 708 TIATGVNFDGKPTQSIKVSDFNEFPHKGRGTGGVRAHRFLK 748


>gi|32472531|ref|NP_865525.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
 gi|32443767|emb|CAD73209.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
          Length = 825

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 253/789 (32%), Positives = 394/789 (49%), Gaps = 61/789 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ + LRFA ++RYL Y+LS I  RA+PD+RDG KPV RR+++ MS + LD  A   K 
Sbjct: 30  EIQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRVLYTMSLLRLDSSAKHSKC 89

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VG+V+GK HPHGD S+Y++LVR++Q F  R P+I G GNFG+IDGD+AAA RYTE R
Sbjct: 90  AKVVGDVMGKYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNAAAMRYTECR 149

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT +A  +L  +    V F+  Y+    EPVV PS+ P+LL NG +GIAVGMAT+IP HN
Sbjct: 150 MTPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGMATNIPPHN 209

Query: 196 VQEICEAALALIDNPEISIEKLL--EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           ++E+C A L L+ NPEI   +L+  + I GPDFPTGG I  ++E + E Y  G G  ++R
Sbjct: 210 LKEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYATGTGTIKLR 269

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
               V E  R    + +TEIP+ V K+ ++E+IAEL+ + ++PL++++RD S ED+R+ L
Sbjct: 270 GVAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLSTEDIRVDL 329

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-----RVPQVMPLDGILKEWLAHR 368
             K  + D D ++  ++  + ++T F +N+  L+         P+ + L  IL  +L  R
Sbjct: 330 LLKKNA-DADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEILWYFLHFR 388

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF------- 421
            +VL  R +  ++A+++R+ IL+GL + +  +DEII IIR+ +                 
Sbjct: 389 LDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKIMKRFPVKE 448

Query: 422 --------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                          L   Q DAIL L+L  L +LE   +  EL       ++I+ LL  
Sbjct: 449 LTPAQARRKTRASNGLDAEQTDAILELKLYRLARLEINVVLDELKKKRKRVDEINKLLAD 508

Query: 468 GKQ------QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
            +       +W  I  E++ +   +   T  GRRR+T   V   +    ++  I  E   
Sbjct: 509 DRDDYTSSGRWAIIKEELQSLISDYGN-TPAGRRRSTIV-VPTEEVEYTEEDFIVAEDCH 566

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V+++  GW++  K    D S    ++GD++   +  +T   +   S+ G  YT    ++ 
Sbjct: 567 VMVTVDGWVKRQK-QIADPSKSRLRQGDAVLACVAGNTRTTLAFFSSLGVCYTARMIDIP 625

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDS-----------TCKL-----LVVSSKGNAFI 625
           +  G GE IQ L      + I+ A   D                     L  S+ G A  
Sbjct: 626 ASTGFGEPIQKLFKFKDGERIIAALSMDPRILGDISEDPKGNYYPATHALAASTDGYALR 685

Query: 626 VEESEIIAN-TRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM-S 682
                     TR G+ F +V     +  VV + G   V  V  + + ++   D+I  +  
Sbjct: 686 FGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTETVLAVSADARAMVCPADEINYLSG 745

Query: 683 RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            GKGV L                 +         R   ++ +        RGG G     
Sbjct: 746 AGKGVLLLKLAASDKLLGFKPSTGDRDLLNVVTNRGAKKTVSTAKYRTTSRGGRGI---- 801

Query: 743 GFPRSGKFL 751
              ++GK  
Sbjct: 802 ELQKNGKIA 810


>gi|325663389|ref|ZP_08151839.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470843|gb|EGC74073.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 648

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 218/636 (34%), Positives = 354/636 (55%), Gaps = 34/636 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MEDN---IFDKVHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELN 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD 
Sbjct: 58  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   +++D VDF   ++E + EP V P++FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARLSRISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E+  A + +ID+      E SIE +L+ + GPDFPTG +I+     I 
Sbjct: 178 GMATNIPPHNLREVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMIL-GTRGIE 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D
Sbjct: 237 EAYRTGRGKIRVRAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D+S  +   +     R ++ ++++  ++  + ++  F + M  L     P+VM +  +
Sbjct: 297 LSDQSNREGMRICIELRRDVNANVVLNQLYKHTQLQDTFGVIMLALV-NNEPKVMNILEM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVM 417
           L  +L H+ EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIRN    +     +
Sbjct: 356 LNYYLRHQEEVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKEGL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  F LT+ Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K     I  
Sbjct: 416 IEAFQLTDVQAQAIVDMRLRALTGLEREKLENEYKELMERIGELRAILADRKLLLGVIKE 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           EI  +   +        RRT+       +     + +I ++ + + ++  G+I+ +    
Sbjct: 476 EILVISGKYGD-----DRRTSI---GFDELDLSTEDLIPEQDVVITMTKLGYIKRMTTDT 527

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
                     +  +   E D ++      T + I+  +  G+ Y +    +        G
Sbjct: 528 FKSQNRGGKGIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRVYRMKGYEIPEAGRTARG 587

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            AI  L+ L  ++ I        Y+    L + + K
Sbjct: 588 TAIINLLQLMPDEKITAMIPIREYEDGKYLFMATKK 623



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 46/133 (34%), Gaps = 11/133 (8%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKV-TGDHVAVVG 665
                ++ ++  G    +      +  R GK    ++   E+ ++ +    T +++    
Sbjct: 506 PEQDVVITMTKLGYIKRMTTDTFKSQNRGGKGIKGMQTIEEDYVEELFMTSTHNYIMFFT 565

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSY----KDGGISDVICFKI-CEGLTWIDSAGRSY 719
              ++      +IPE  R  +G  + +      D  I+ +I  +   +G     +  +  
Sbjct: 566 NTGRVYRMKGYEIPEAGRTARGTAIINLLQLMPDEKITAMIPIREYEDGKYLFMATKK-- 623

Query: 720 NRSENDLLGWLGK 732
              E D    L K
Sbjct: 624 RSCEEDANYRLCK 636



 Score = 42.5 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 11/51 (21%)

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +       I E    I      Y +           RGG G    +   
Sbjct: 495 DELDLSTEDLIPEQDVVITMTKLGYIKRMTTDTFKSQNRGGKGIKGMQTIE 545


>gi|225570592|ref|ZP_03779617.1| hypothetical protein CLOHYLEM_06694 [Clostridium hylemonae DSM
           15053]
 gi|225160605|gb|EEG73224.1| hypothetical protein CLOHYLEM_06694 [Clostridium hylemonae DSM
           15053]
          Length = 746

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 206/762 (27%), Positives = 358/762 (46%), Gaps = 51/762 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MQDSQIIRTEYSDLMKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TEAR+ ++  +  L  +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TEARLAKLTQDAYLSDLDKDIVDFVPNFDETEKEPEVLPVRVPNLLINGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A  A + N EIS ++L+ Y+ GPDFPTGGI+V +++ + + Y  G G  
Sbjct: 181 IPPHNLGEVVDAVKAYMKNDEISTKQLMRYMKGPDFPTGGIVV-NKDDLPDIYESGAGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +   E++  G   +VVTEIPY +  +   + +  +  L+ +K+   + DI ++S++
Sbjct: 240 KIRGKVETEDMKGGKKRLVVTEIPYTMIGAGIGKFLNDVCALVESKKTNDIVDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +   +      P+ M L  I++  +  
Sbjct: 300 EGIRIVIELKKGADAENLTNMLYKKTRLEDTFGV-NMLAVADGRPETMGLKQIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------- 419
           + E+  R+    +     + EI +GL+ A   ID II I+R     K             
Sbjct: 359 QFELATRKYKNLLAKELDKKEIQEGLIKACDVIDLIIEILRGSQSVKDAKACLTKGVTEN 418

Query: 420 -------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                            TE Q  AIL +RL  L  LE   ++ E +  L      + +LN
Sbjct: 419 IKFKTSISKKMAAMLRFTERQASAILEMRLYKLIGLEIEALQKEHEETLEHIASYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I  ++  +K+ +         R+    V  A+ A  ++  IE++ +  ++  
Sbjct: 479 NYDSMSEVIMEDLDRIKKEYG--------RSRRTAVENAEAAVFEENKIEEQEVVFLMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            G+ +++ +   + +          +  L    T +I L +  GK + +   +L  G+  
Sbjct: 531 FGYAKTVDTAVYERNKEA--ADAENRYVLSCMNTGKICLFTNTGKMHQIKVLDLPYGKFR 588

Query: 587 GE--AIQLLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            +   I  + + +  Q+ +            +LL V+  G    V+ SE     R     
Sbjct: 589 DKGQPIDNVSNYDSTQETIVYLCDAQQMQIARLLFVTKTGMVKKVDGSEFQVAKRT-IAA 647

Query: 642 LKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGIS 698
            K+  E+++  V  +     + +   +   L F   ++ E  +G  GVR     K+  + 
Sbjct: 648 TKLQEEDELISVQVINDSQNIVLQTADGYFLRFPAGEVSEKKKGAIGVRGIRLHKNDEVE 707

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
               F+       +        +         GKR   G   
Sbjct: 708 HAYLFEEGTETKVVY-----KEKEVTLNRLKSGKRDTQGVKN 744


>gi|309775456|ref|ZP_07670459.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916845|gb|EFP62582.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 832

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 220/753 (29%), Positives = 380/753 (50%), Gaps = 26/753 (3%)

Query: 6   ISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +      +E +  V +  L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM E
Sbjct: 1   MKKKEQQLEHHSSVISSPLEEIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G  +   ++KSA+ VG VIG  HPHGD SVY+++VR++Q +  R P I  QGN G+ID 
Sbjct: 61  DGNTWDKGYRKSAKTVGLVIGNYHPHGDSSVYNAMVRMSQEWKIRTPQIDMQGNNGSIDD 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+ +++E +L+ ++++ V +   +++   EP V P+++PNLL NG +GI
Sbjct: 121 DPAAAMRYTEARLGKISEHLLKDIEKETVLWAPNFDDTAMEPTVLPARYPNLLVNGITGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           A G AT+IP HN+ E+ +AA+  I + + S+E+L+EYI GPDFPTGG IV+  + I E++
Sbjct: 181 AAGYATNIPPHNLSEVIDAAVYRIQHADCSLEELMEYIQGPDFPTGG-IVQGLDGIREAF 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             G+G   VR +  + E  +    IV+TEIPY+V KS +++KI ++ + K+I  + D+RD
Sbjct: 240 ETGKGRIIVRGKAVI-EQKKTVQQIVITEIPYEVVKSNMVKKIDDIRLNKKIEGILDVRD 298

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    +  + D+++  ++  +D++  +  N+  +   + P  M L  +L  
Sbjct: 299 ESDRNGLRVVVDMKKDANGDVILNYLYKNTDLQVSYNYNVVAIVD-KRPVQMGLAQMLDA 357

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           ++ HRREV+ RRS + ++  + R  IL+GL+ A   +DEIIA+IR               
Sbjct: 358 FIEHRREVIERRSRYDLKKKEDRCHILEGLIKAVSILDEIIALIRASKDKADSKRRIMDA 417

Query: 423 --LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
              ++ Q +AI+ +RL  L   +  Q++ E   LL E E++  +L + +     +  E+ 
Sbjct: 418 FAFSDAQAEAIVTMRLYRLSSTDITQLREEYATLLNEIEELHDILENPRMLKKVMIRELH 477

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVK+ F         R T  E    +    + AMI  E +   IS  G+ + +   S + 
Sbjct: 478 EVKKAFKTP------RLTRIEHEIEEIVIDKVAMINSEQVMFTISRDGYFKRVSMRSYNA 531

Query: 541 SALHFKEGDSLKI---ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLID 595
                               +T D +L  +T G     P   +   R       I   I 
Sbjct: 532 GKEDMTGLKEGDHLVGYGEVNTLDHVLFFTTQGTYGYTPVYEVEESRWKEIGSHINSTIR 591

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMK 651
           ++  + I  AFV   + +   ++ V+  G        E  ++   K  + +K+   +++ 
Sbjct: 592 ISGEEKITDAFVLRSFATNAYMISVTKNGLVKKTAVREYEVSRNNKTMSNMKLLEGDEVI 651

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGL 709
             +     D + +  +N  +  + +  IPE S R KGV+  +     +    C    +  
Sbjct: 652 TTMAAYDYDEILIASKNGYVSRYPVSLIPETSPRSKGVKAMNLVMDELVSA-CIHHADAS 710

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +    +   +        +  R   G+++ K
Sbjct: 711 QLVVFTDQCQVKRIKLSDIDVTGRPARGAMICK 743


>gi|303286821|ref|XP_003062700.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456217|gb|EEH53519.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1082

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 232/777 (29%), Positives = 381/777 (49%), Gaps = 85/777 (10%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G  + +       E +    L     + YLAYA+S I  RA+PD+RDG KPVHRRI++AM
Sbjct: 47  GDGDGAVDEDATNERIIDTELSVEASQSYLAYAMSVIVGRALPDVRDGLKPVHRRILYAM 106

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+GLD    FKK AR+VGEV+GK HPHGDQSVYD+LVR+AQ F     L+ G GNFG++
Sbjct: 107 HELGLDSKKPFKKCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSAQLVDGHGNFGSL 166

Query: 122 DGDSAAAYRYTEARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           D D  AA RYTE R+  VAE + L  +D DAVDF +T++   +EP V P++ PN+L NG+
Sbjct: 167 DADPPAAMRYTECRLRSVAEAMLLADIDADAVDFTETFDGSQNEPSVLPARLPNILINGS 226

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPE-ISIEKLLEYIIGPDFPTGGIIVESRE-- 237
           +GIAVGMATSIP HN++E+ +A      +P+  +++ LL+ +  PDFPT GII+  +E  
Sbjct: 227 TGIAVGMATSIPPHNLREVADALAVYAADPDGCTLDDLLKVMPAPDFPTSGIIMAPKEGK 286

Query: 238 SIVESYRLGRGGFRVRARWCVEEVG--------RGSWCIVVTEIPYQ------------- 276
              + Y  G+G   +R    +EE+              +++T IPYQ             
Sbjct: 287 GFRDMYATGKGSVTLRGAAHIEEIKTSVRGKNATTKNAVIITSIPYQARSIHWSPYDRVG 346

Query: 277 ----VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
                 K+ L  +IA+L+ ++++  + D+RDES  D   V+    RS DP+ + E ++  
Sbjct: 347 VVNATNKASLCGQIADLVNSRQLDGVVDVRDESDRDGMRVVVEIRRSGDPNFVREQLYTR 406

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           + ++ R  +N+  L  GR P+V+ L  I++E+L  R E + RR+   +     R+ +++G
Sbjct: 407 TRLQVRVSVNLVGLI-GREPKVLTLMDIMREFLEFRCESIERRARHELSKASSRLHVVEG 465

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMVS----RFSLTENQVDAILNLRLRSLRKLEEYQIK 448
            L      D ++A IR          +     FSL++ Q +A+L + LR L  LE  +++
Sbjct: 466 YLAVQAAPDAVVAAIRAAKDGPEAQKTLQEAPFSLSKEQSEAVLAMPLRRLTGLEHDKLR 525

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD---------------LG 493
           +E  +L A+ E++++LL+        +A E +E+++ +                      
Sbjct: 526 AEEADLTAKVEQLNALLSDRALVIAAVASEAKELRDKYGVERKTLIDHSAAKLAAEVAEA 585

Query: 494 RRRTTFCEVSRADKATLQQAMIE----------------KEPITVVISNRGW-------- 529
           RRR+        D   + +  +                      +V++ +G+        
Sbjct: 586 RRRSPPSGDGGEDVGNVAEREMAAAALYAKRMNIPLDSLDADNLIVMTGKGYIKRIDPKI 645

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--G 587
                  ++       + GD +    H +  D +L  +  G+ Y + A ++        G
Sbjct: 646 FSRQNKGTIGKKGGRMRGGDQVTKVTHCNGLDTVLFFTDRGRVYAVRAYDIPQSSTTALG 705

Query: 588 EAIQLLIDLNHNQDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                ++ L   + I      D+           L++++++G       SE     R GK
Sbjct: 706 TPFTRVLKLAEGETITAMLPVDTASRRGSNVGEHLVMLTARGVVKKTPISEFANINRAGK 765

Query: 640 TFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
             L +   +++K V  V  GD + V G +  +L FS+D I   SR G GV+   +++
Sbjct: 766 RALGLQKGDRLKHVELVRDGDGIMVAGVDGMVLHFSMDSIRAQSRIGSGVKAMKFRE 822



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 18/121 (14%)

Query: 609  DSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKLVVKV--------TG 658
            +    +L+V+S+G    +   +     R G     + +    ++  +            G
Sbjct: 962  ECGAMVLLVTSEGQGKRISVGQFRQKGRGGLGNKAIGLEEGSRLAAMCITGVDPALREAG 1021

Query: 659  D------HVAVVGENRKLLIFSIDQIPE-MSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            D       V +      L  + + ++   + R  KGV+L    DG     I     + + 
Sbjct: 1022 DAECVAEEVIIGSTAGVLNRYDVTELRPQLGRNAKGVKLMKLNDGDTVRDITLLPVDAVE 1081

Query: 711  W 711
             
Sbjct: 1082 L 1082



 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 14/99 (14%)

Query: 661  VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE------------ 707
            V +V    +    S+ Q  +  RG  G +    ++G     +C    +            
Sbjct: 967  VLLVTSEGQGKRISVGQFRQKGRGGLGNKAIGLEEGSRLAAMCITGVDPALREAGDAECV 1026

Query: 708  GLTWIDSAGRSYNRSENDLLGWLG-KRGGVGSLVPKGFP 745
                I  +        +         R   G  + K   
Sbjct: 1027 AEEVIIGSTAGVLNRYDVTELRPQLGRNAKGVKLMKLND 1065


>gi|78211563|ref|YP_380342.1| DNA topoisomerase IV subunit A [Synechococcus sp. CC9605]
 gi|78196022|gb|ABB33787.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CC9605]
          Length = 822

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 239/776 (30%), Positives = 388/776 (50%), Gaps = 46/776 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++   +L+ + ED VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPISHQAMLEEIGEDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALI  PE+S EKLLE I GPDFPTGG ++ S   + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLVALIRKPELSDEKLLELIPGPDFPTGGEVLIS-SGLRDTYLHGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R     EEV  G        +VVTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHTEEVQPGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DP  +++ +   + +++ F   +  L  G+  Q + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPGKVLKDLQRRTALQSNFGAILLALVDGQP-QQLSLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R   L RR+S  ++  + R+E+++GL+ A  N+  +IA+I+  +     +  ++ R  
Sbjct: 359 DFRELTLIRRTSHALRKTEDRLEVVEGLITALNNLQAVIAMIQEANDAASARASLMVRLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ ELD L A+++++  LL++  Q  + +  E++ +
Sbjct: 419 LSERQADAVLAMPLRRLTGLEQESLRQELDELRAKRQRLKLLLDNRDQLLDAMVTELKGL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE-------------PITVVISNRGW 529
           K+ FS       RRT   E   A  A    +                     V+I   G 
Sbjct: 479 KKRFSTP-----RRTRLVEGGDALMAERAASQRPNTELLRQQALAALPGDGRVLIQADGQ 533

Query: 530 IRSLKSHSVDLSALHFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           ++      +    L+            ++ L      R+L +S  G+   +        +
Sbjct: 534 VKIFTPQVLGRLHLNDPCPVGDAPSPARVILPIEPPPRLLAVSAGGRIAQVR-WEFAGQQ 592

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                  L   L+    IV+             L ++SS G    +  SE++  + +  +
Sbjct: 593 PGPIDRFLPTGLD-GDPIVSLLSLPSQNIDELSLGLLSSDGRFKRLPVSEVVDLSGRATS 651

Query: 641 FLKVSSEEKMKLVVKVTGD-HVAVVGENRKL--LIFSIDQIPEMSR-GKGVRLQSYKDGG 696
            LK+    ++   V       + ++ +  +L  L  + + +P M R  +G        G 
Sbjct: 652 VLKLKEGVELNNAVICRNQGTLVLISDIGRLLRLRINEESLPLMGRLAQGPMTMRLLPGE 711

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              ++     E    +  + R      +       +RG +GS+  +    S + + 
Sbjct: 712 --QIVGAVCTEQAPLMLFSQRGMIGRIDCSGMRYNQRGDLGSMAVQVDAESDRLVG 765


>gi|145355547|ref|XP_001422022.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582261|gb|ABP00316.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 897

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 221/791 (27%), Positives = 364/791 (46%), Gaps = 65/791 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  V L    +  YL+YA+S I  RA+PD RDG KPVHRRI++ M E+GL      +
Sbjct: 32  EEKIIDVELASEAKTSYLSYAMSVIVGRALPDARDGLKPVHRRILYGMHELGLRADKPHR 91

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+GK HPHGD SVY++LVRLAQ F    PL+ G GNFG++D D  AA RYTE
Sbjct: 92  KCARVVGDVLGKYHPHGDGSVYEALVRLAQDFSMSAPLVDGHGNFGSLDDDPPAAMRYTE 151

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+ ++AE  +L  +  + V+F +T++   +EP V P++ PNLL NG+SGIAV +AT++ 
Sbjct: 152 CRLNKLAEKGLLADIGNECVNFTETFDGSQTEPEVLPARVPNLLINGSSGIAVAVATNMA 211

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A  AL  NP+ S+++L+  +  PDFPTGG +V ++  + E Y  G+GG  +
Sbjct: 212 PHNLGESVDALCALAKNPDCSLDELMALLPAPDFPTGG-VVTNKSGMKEIYETGKGGVTL 270

Query: 253 RARWCVEEVGR-----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R  +E V           +V++EIPYQ  K+RL+E+IA+ +  + I  + DIRDES  
Sbjct: 271 RGRATIERVSAARGSLDKDAVVISEIPYQTNKARLVEQIADHVNGRTIDGISDIRDESDR 330

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   V+    R  D   ++E ++  + +E +F +N   L   + P VMPL  IL E++  
Sbjct: 331 DGMRVVIEIKRGYDAASVLEELYAKTKLEVKFFVNNVALIDNK-PTVMPLRQILDEFIKF 389

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           R + + RR+ F +     R  +++G  I   + D ++ IIR           +     L+
Sbjct: 390 RVDTIERRTRFMLSKAQDRKHLVEGFSIVLADADGVVKIIRKSKDGPSASKKLRESHGLS 449

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q D+IL + LR L  LE  ++ +EL  L  +      LL++  +  + +  E  E KE
Sbjct: 450 DIQADSILAMPLRRLTGLEADKLDAELKELNEQIAHFQGLLSNKSKVIDVLVQEAMEAKE 509

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            F++       +         D       +   E   V         +    +       
Sbjct: 510 AFARPRRTSVEQIESLSGVEDDSPPKDNILTLSERGYVKRICPKNFGAQNRGTRGKRMSK 569

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD--- 601
            +  D L  A+H   +D+IL  S  G+   L A  +     +   +     LN       
Sbjct: 570 LRANDELSKAMHCKDSDQILFFSDRGRVQKLSAKAIPQSELNTIGVPATSLLNTFAKRNQ 629

Query: 602 -IVTAFVYD-------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            +      +           +++++S+G   +   + ++ +  KGK  + +   ++++ V
Sbjct: 630 NVTAMLSTNMKQGEVADDQVVVMLTSQGKVSVASAASMLGH--KGKKVITLDKGDRLQQV 687

Query: 654 VKV-TGDHVAVVGE----NRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDV---- 700
           +   T DH+ + G        +L   +     +        G++    K    + V    
Sbjct: 688 MFARTSDHLFITGTGKAGKGLILHCRVGDFRVVKSACRPISGIKTMGEKKVAEAVVEDAG 747

Query: 701 -------------------ICFKICE---------GLTWIDSAGRSYNRSENDLLGWLGK 732
                              +     E         G   + +  +   +        L  
Sbjct: 748 DDEDDDEDDGELLPPKTVGMAIVPGERMVSASEEFGPFILFTTKKGKGKVVAANSYRLLG 807

Query: 733 RGGVGSLVPKG 743
           RG  G +  K 
Sbjct: 808 RGRSGVMCMKF 818



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 27/109 (24%), Gaps = 16/109 (14%)

Query: 613 KLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKV--------TGDHVA 662
            +L  + KG   +V  +    +   R G   +K    +   L              D V 
Sbjct: 785 FILFTTKKGKGKVVAANSYRLLGRGRSGVMCMKFKKGDDDALATITLVDRIGDDVTDEVL 844

Query: 663 VVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICE 707
           +          +++ +P   R      G  +                 E
Sbjct: 845 LSTTGGISNRIAVNDLP--KRSDPLALGAAIIKLDATDALKSANLLPSE 891



 Score = 44.4 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 28/96 (29%), Gaps = 7/96 (7%)

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           + +   E+M    +  G  +    +  K  + + +    + RG+ GV    +K G    +
Sbjct: 767 MAIVPGERMVSASEEFGPFILFTTKKGKGKVVAANSYRLLGRGRSGVMCMKFKKGDDDAL 826

Query: 701 ICFKICE------GLTWIDSAGRSYNRSENDLLGWL 730
               + +          + S     +          
Sbjct: 827 ATITLVDRIGDDVTDEVLLSTTGGISNRIAVNDLPK 862


>gi|300173092|ref|YP_003772258.1| DNA topoisomerase IV subunit A [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887471|emb|CBL91439.1| DNA topoisomerase IV, A subunit [Leuconostoc gasicomitatum LMG
           18811]
          Length = 812

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 197/752 (26%), Positives = 350/752 (46%), Gaps = 28/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM + G  F   +
Sbjct: 1   MADRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTFDHPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++D D AAA RYT
Sbjct: 61  RKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQNWKVREPLIDMNGNNGSVDNDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A  ++  + ++ VD    +++   EP V PS+  +L  NG +GI+ G AT IP
Sbjct: 121 EARLSKIAGEMMTDLGQETVDMVLNFDDTTYEPTVLPSRVLSLFINGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EI  A   L+D+PE  +  L+ Y+ GPDFPTGG I++  + I ++Y+ GRG   V
Sbjct: 181 PHNLKEINGALTYLLDHPEAPLSALMRYVKGPDFPTGG-IIQGLDGIKKAYKTGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I +TE+PY+V KS L+ KI  + + K +  + ++RDES  +   +
Sbjct: 240 RAKTVISEIKGGKKKIEITELPYEVVKSNLVAKIDGIRLNKEVAGISEVRDESDREGMSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +   N+ ++   ++  +F  +D++  +     V    + P  + L   L+ +L  R+EV+
Sbjct: 300 VIELNKDVNAAGILTYLFKKTDLQIYYNF-NMVAIHDQRPVHVSLKQGLEAFLNFRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            +RS++ +     R  I++GL+     +DE++A IR     K    +    +  T+ Q +
Sbjct: 359 LKRSAYELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLIDSYQFTQPQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  Q++ E   L A+  +++ ++N      + I  EI E+   +   
Sbjct: 419 AIVTLQLYRLTNTDVTQLEEEFATLAAKIVRLNLIINESSALNDVIRDEIAEITTTYRSP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                 R +  E    +        I +E + V++S  G+ +     S   S       +
Sbjct: 479 ------RRSEIEAEVENLIIDSAITIAEEDVQVLVSRNGYYKRASLRSYKASDSDNGLAE 532

Query: 550 SLKIALHAHTT--DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL------NHNQD 601
                          + + +  G     P   L   +           L           
Sbjct: 533 DDLAIFEGQLNTTQHLFMFTNKGNIIYRPVHELPDSKWKDTGEHFSQQLSNWHADEFVIK 592

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEK----MKLVVK 655
           ++     +      VV++ G       S+++  A  +K    +K+ ++      +    +
Sbjct: 593 VIAIDNLEQEGAFTVVTNDGFIKQTILSDMVPKAYKKKTSMAIKLKTDSSYVVGIAYFKQ 652

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                V ++  +   L F +  +PE+  R  GV+    +         F   +       
Sbjct: 653 AKQQDVLLLSHDGVGLRFKVTDVPEIGPRTAGVKAMDLRGTDTIMAALFITNDSQQVAIV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           A     +          KR   G L+     +
Sbjct: 713 ASNGAFKYMPISEINRSKRANKGLLIF--TQK 742


>gi|171059313|ref|YP_001791662.1| DNA topoisomerase IV subunit A [Leptothrix cholodnii SP-6]
 gi|170776758|gb|ACB34897.1| DNA topoisomerase IV, A subunit [Leptothrix cholodnii SP-6]
          Length = 774

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 266/770 (34%), Positives = 413/770 (53%), Gaps = 45/770 (5%)

Query: 3   VDNISNSNTLV--EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
             N ++ +TL   ++   A++L    E  YL YALS +K RA+PD+ DG KPV RRI+++
Sbjct: 2   DPNPNDFSTLPPGDDGGDALTLAHYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYS 61

Query: 61  MSEMGLDFGA----AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           M  MGL F         K AR+VG+V+G+ HPHGD + YD+LVR+AQ F QRYPL+ GQG
Sbjct: 62  MQRMGLAFAGAGGAKPVKCARVVGDVLGRYHPHGDTAAYDALVRMAQDFSQRYPLVDGQG 121

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+ DGD AAA RYTEAR+  +A L+L  +DE  +DF   Y+    EP + P++ P +L
Sbjct: 122 NFGSRDGDGAAAMRYTEARLAPIARLLLDEIDEGTIDFVPNYDGSTEEPALLPARLPFVL 181

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG SGIAVG+AT +PSHN++E+  A +ALI +  +S E L   +  PD+P GG I+ S 
Sbjct: 182 LNGASGIAVGLATEVPSHNLREVAAAVVALIRDEHLSDEDLYALLPAPDYPGGGQIISSE 241

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I E+YR GRG  +VRARW +EE+ RG W +VVTE+P      R++E+I EL   K   
Sbjct: 242 TDIREAYRTGRGSLKVRARWKIEELARGQWQLVVTELPPGASAQRVLEEIEELSNPKIKA 301

Query: 297 LLEDIRDE--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
             + +  E                        VR+V  P++R+++   L+  +   + +E
Sbjct: 302 GKKALSTEQVQNKALLLSVLDGVRDESNKDAMVRMVFEPRSRTVEQQELITILLAHTSLE 361

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
              P+N+ ++     P    L  IL EW+  R+  + RR+  R+  +  R+ +L+G  + 
Sbjct: 362 CSAPINLTMVGADGRPTQKSLRRILVEWIGFRQATVRRRTEHRLARVLDRMHVLEGRQLV 421

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
            LNIDE+I IIR  D+PK  +++RF+L++ Q + IL +RLR L +LE  +I+ EL  L  
Sbjct: 422 LLNIDEVIRIIRESDEPKAALIARFALSDRQAEDILEIRLRQLARLEAIRIEQELAELRT 481

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E+ K+D +L +       +  EI    +    +     RRT      +A+K  + +  + 
Sbjct: 482 EQGKLDDILANPGTLRRLLIREIEADAKAHGDA-----RRTLI----QAEKRAVVEVKVV 532

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            EP+T+V+S +GW+R+   H  D +   FK GD L       T D +++L +DG+ Y++P
Sbjct: 533 DEPVTLVVSQKGWVRARTGHGHDPAGFAFKAGDGLYGTFECRTVDALVVLGSDGRVYSVP 592

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
              L   RG G  I  LI+L     I+      ++  LL+  S G   + +  ++I+  +
Sbjct: 593 VNTLPGARGDGVPITSLIELEAGSQILHYIAGSASTPLLLAHSGGTGLLAQIGDLISRQK 652

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYK 693
            GK FL +   E+    + V  +H  VA +  + +LL+F +D++  + + G+G+ L    
Sbjct: 653 GGKAFLTLEPSERCLPPLPVALEHRQVACLSSSGRLLVFGLDELKRQPNGGRGLMLMDLD 712

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSE-----NDLLGWLGKRGGVGS 738
           +      +       +  +   GR     E       L   LGKR   G 
Sbjct: 713 EADALAAVATFGA--VLKLVGTGRGGKVREDTLRAPSLEIHLGKRARKGK 760


>gi|159902545|ref|YP_001549889.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
 gi|159887721|gb|ABX07935.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
          Length = 828

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 216/775 (27%), Positives = 372/775 (48%), Gaps = 46/775 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +EE ++A+SL   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     F
Sbjct: 1   MEERLQAISLHHEMQRSYLEYAMSVIVGRALPDARDGMKPVQRRILYAMHELGLTPERPF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYP++ G GNFG++D D  AA RYT
Sbjct: 61  KKCARVVGDVLGKYHPHGDQAVYDALVRLVQSFASRYPVLDGHGNFGSVDDDPPAAMRYT 120

Query: 133 EARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E R+  +A E +L  +  + V+F   ++    EP+V P++ P L+ NG SGIAVGMATSI
Sbjct: 121 ETRLAAIAYEAMLGELGSNTVEFAPNFDSSQQEPIVLPAQLPFLILNGCSGIAVGMATSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A + +I  P IS E+LL  I GPDFPTGG ++     + E+Y  G+G   
Sbjct: 181 PPHNINEVINALIEIIKKPNISEERLLSIIPGPDFPTGGEVLIGT-GVKETYLKGKGSIP 239

Query: 252 VRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R    +EE+           I++TE+PYQ+ KS  IEK+AE++   ++  + DIRDES 
Sbjct: 240 MRGIAHIEEINPGKGKHKKNAIIITELPYQISKSNWIEKLAEMVNNGKVEGIADIRDESD 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +   ++    R  +P+ ++ +++  + +++ F   +  +     P+ + L   L  +L 
Sbjct: 300 REGMRIVVELRRDSNPEKILNTLYQRTSLQSNFGATLLAIV-NGQPKQLSLKKFLDIFLE 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SL 423
            R   + RR+   +     R+EI++GLL A  N+  +I +I +                L
Sbjct: 359 FRELTIIRRTKNNLLKTLERLEIVEGLLKALENVRNVIDMIESAKDAMEARTRLMVRLDL 418

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TE Q D IL++ LR L  LE   + +EL+ L  +K  ++ +LN   +    +  E++ ++
Sbjct: 419 TEKQADGILSMPLRRLTNLETQSLYNELEELKEKKSCLEIVLNDRDELLKAMIEELKGLR 478

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-------------KEPITVVISNRGWI 530
           + F       +R+T   E      A    ++                    ++I N   +
Sbjct: 479 KQFG-----SKRKTKLIEGGDELLAQRNASLRPNAELQRKKAYENLPRESRLMIQNDNQV 533

Query: 531 RSLKSHSVDLSALHFKEGDSL-----KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
           + +    +    L             ++        ++++++  GK   +        + 
Sbjct: 534 KIVSPQLLGRLHLDESCNLGDAPIPARLIWPIEKNPKVIVVTNCGKIALVK-WEFSGNQP 592

Query: 586 HGEAIQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                 +   L   + I +      D    + +++S G    ++  EI+  + +  + LK
Sbjct: 593 GIIQKFIPTILE-KEKISSIIPIGKDKELSIGLLTSDGRFKRLDIEEIVDMSGRAASLLK 651

Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISD 699
           +     ++  +     D++ +V +  ++L   ID   IP M +  +G  +     G    
Sbjct: 652 LKENVNLQSGLICRLNDYLIIVSDIGRILKIKIDDENIPIMGKLAQGSVIMKLFPGERI- 710

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL--VPKGFPR-SGKFL 751
           +           I    +      +       KRG +G++  + K   +   + +
Sbjct: 711 IGAITCSSKEDLIMITKKGSILKHSINSIRTCKRGDLGTIKNILKDSNKEQNRVV 765



 Score = 44.0 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 7/160 (4%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI-DLNHNQDIVTAFVYDSTCKLL 615
               D ++++S  G+   +   +         A   +I  L   + I+ A    S   L+
Sbjct: 664 CRLNDYLIIVSDIGRILKIKIDDENIPIMGKLAQGSVIMKLFPGERIIGAITCSSKEDLI 723

Query: 616 VVSSKGNAFIVEESEIIANTR----KGKTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKL 670
           +++ KG+      + I    R      K  LK S++E+ ++V    G  +  V+    + 
Sbjct: 724 MITKKGSILKHSINSIRTCKRGDLGTIKNILKDSNKEQNRVVQVFNGKSLVGVITSKERN 783

Query: 671 LIFSIDQIPEMSRGKGVR-LQSYKDGGISDVICFKICEGL 709
              S + I E+   K  + L    D    D +   I    
Sbjct: 784 GRISQEAIKEIKYDKINKDLIKVDDDEYIDEVIPLIDPNS 823


>gi|148238341|ref|YP_001223728.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803]
 gi|147846880|emb|CAK22431.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803]
          Length = 821

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 225/769 (29%), Positives = 385/769 (50%), Gaps = 50/769 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   +L  +  D VDF + ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPIAHEGLLDEIGNDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL+  P++S +KLL  I GPDFPTGG ++     + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALVRKPDLSDDKLLSLIPGPDFPTGGEVLLG-SGVRDTYLRGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    VEEV  G        ++VTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHVEEVQLGKGRHKRNAVIVTELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DPD +++ +   + +++ F   M  L     PQ + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPDAVLKDLQRRTSLQSNFGAIMLALVD-GQPQQLSLRRLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            +R   L RR+S  ++  + R+E+++GL+ A  ++  +IA+I+            +    
Sbjct: 359 DYRELTLIRRTSHALRKAEDRLEVVEGLITALQSLQRVIAMIQEAQDAAAARASLMVHLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE   ++ E + L AE++++  LL++  Q  + +  E+R++
Sbjct: 419 LSERQADAVLAMPLRRLTGLERESLRQEAEELRAERQRLKLLLDNRDQLLDALVQELRQL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-------------KEPITVVISNRGW 529
           K+ F+       RRT   E      A    +                     ++I + G 
Sbjct: 479 KKRFATP-----RRTRLVEGGDHLLAERAASQRPNAELQRRQALEALPPDSRILIQDDGQ 533

Query: 530 IRSLKSHSVDLSALHFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           ++ +    +    L+       E    +I L      ++L ++  G+   +        +
Sbjct: 534 VKVISPQLMGRLHLNEPTALGDEPSPARIILPIKPVAKLLAVTASGRVALIR-WEFAGQQ 592

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDST---------CKLLVVSSKGNAFIVEESEIIANT 635
                  L   L     +V+                  L ++SS G    +   E++  +
Sbjct: 593 PGSLERFLPTALQ-GDPVVSVLQLPDAEADSNAAAVSSLGLLSSDGRFKRLAMQELLDLS 651

Query: 636 RKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKG-VRLQ 690
            +  + +K+    ++K  V    G  ++++ +  ++L   + +  +P M +  +G V ++
Sbjct: 652 GRAASVVKLKEGIELKTAVICQEGGALSLISDLGRVLHLPVSEANLPLMGKLAQGPVTMR 711

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
              +  +   +     +    +  + +   +S         +RG +G +
Sbjct: 712 LLPEESLIAAVATNPDQQDPLLLFSRQGRIKSLARDAVRACQRGDLGVI 760


>gi|303257798|ref|ZP_07343808.1| DNA topoisomerase IV, A subunit [Burkholderiales bacterium 1_1_47]
 gi|302859401|gb|EFL82482.1| DNA topoisomerase IV, A subunit [Burkholderiales bacterium 1_1_47]
          Length = 813

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 258/765 (33%), Positives = 407/765 (53%), Gaps = 39/765 (5%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D +  +    + +   ++L +     YL YA+S +K RA+PD+ DG KPV RRI++AM
Sbjct: 26  GSDIVEEALKHADTDCDELTLAYFASRAYLEYAISVVKGRALPDVCDGMKPVQRRILYAM 85

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
             +GL+      KSAR+VGEV+GK HPHGD + YD++VRLAQ F  RYPL+ GQGNFG+ 
Sbjct: 86  KRLGLNPDVKTVKSARVVGEVLGKYHPHGDLAAYDAMVRLAQDFTMRYPLVQGQGNFGSA 145

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTE R+++ A+L+L  +D+  V F   Y+    EPV+ P++ P LL NG+S
Sbjct: 146 DGDGAAAMRYTEVRLSKYADLLLGELDKGTVKFIPNYDGTHKEPVLLPARLPVLLLNGSS 205

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IPSHN+ E+ EAA+ +I NPEI+ ++LLE + GPDFP G  ++ S   I  
Sbjct: 206 GIAVGMATEIPSHNLTEVGEAAIEVIRNPEITTDELLEIVKGPDFPGGAQVISSASDIKN 265

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---- 297
            YR G G  +VRA +  EE+ RG W +V   +PY+V   +++ ++  L   K        
Sbjct: 266 VYRSGYGNLQVRATYHFEELSRGQWQLVFDSVPYKVSVMKVMSELEALTNPKAPQGKKSL 325

Query: 298 --------------LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                         +  +RDES+ +  VR+V+ PK++S+D + L+ +I   + +ET    
Sbjct: 326 TAKQQQDKQLIMNVMSGMRDESSAEAPVRLVIDPKSKSIDREELVSTILSKTSLETSCKF 385

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ V+ +   P+   L  IL EW++ R   +  RS   +   + R+  L+G LI  ++I+
Sbjct: 386 NLVVIGIDGKPRQKGLKDILSEWVSFRLRTVRARSQTSLNEAEARIHTLEGRLIVLVDIE 445

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D PK  +++ F L++ Q + IL ++LR L  L+E +++ EL+ L  E E++
Sbjct: 446 EVIRIIRGTDDPKKELITHFGLSDTQAEDILEIKLRQLASLDEVKLRKELEKLRNEAERL 505

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             LL   K+   ++  EIR+  + +        RRT   E   A         +  EP+T
Sbjct: 506 RGLLTDEKKLRREVTKEIRQDIDTYGDE-----RRTLIEEAKGA----SIAKQVIDEPVT 556

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V++S +G++RS + H  D  A++FK GD  + ++   + D + +LS  G+ Y++P  +L 
Sbjct: 557 VIVSEKGFLRSRQGHGFDARAMNFKLGDKYRCSMECRSVDNLYILSNTGRIYSIPVSSLP 616

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           S RG G  +   +                   LL  S     F  + S++    R GK+F
Sbjct: 617 SARGEGTHVSAFVQFQDGDVPFDYICGAPDTVLLFTSDAAMGFFCKMSDLAVRQRGGKSF 676

Query: 642 LKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             +    K   V   T     +A +  + +L++F+ D++  +S  GKG  + + +D    
Sbjct: 677 FIL-DGAKPLPVQVSTPLTGWIAALSSSGRLVVFTTDELRALSSGGKGTTIMALQDDEKL 735

Query: 699 DVICFKICEGLTWIDSAGRSYNRSEND-----LLGWLGKRGGVGS 738
            V    I      +   GR     E       +  +  +RG  G 
Sbjct: 736 -VAAVPISPNGVVVVGKGRGGKIQELLVGPRSIEDYRTRRGRKGR 779


>gi|313897504|ref|ZP_07831047.1| DNA topoisomerase IV, A subunit [Clostridium sp. HGF2]
 gi|312957874|gb|EFR39499.1| DNA topoisomerase IV, A subunit [Clostridium sp. HGF2]
          Length = 831

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 225/743 (30%), Positives = 376/743 (50%), Gaps = 24/743 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
             +V +  L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM E G  +   ++
Sbjct: 12  HSSVISSPLEDIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYEDGNTWDKGYR 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVYD++VR++Q +  R P I  QGN G+ID D AAA RYTE
Sbjct: 72  KSAKTVGLVIGNYHPHGDSSVYDAMVRMSQEWKIRTPQIDMQGNNGSIDDDPAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ +++E +L+ ++++ V +   +++   EP V P+++PNLL NG +GIA G AT+IP 
Sbjct: 132 ARLGRISEHLLKDIEKETVLWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +AA+  I + + S+++L+EYI GPDFPTGG IV+  E I E++  G+G   +R
Sbjct: 192 HNLSEAIDAAVYRIQHADCSLDELMEYIQGPDFPTGG-IVQGIEGIREAFETGKGRIIIR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  + E  +    IV+TEIPY+V KS +++KI ++ + K+I  + D+RDES  +   V+
Sbjct: 251 GKANI-EQKKTVQQIVITEIPYEVIKSNMVKKIDDIRLNKKIEGILDVRDESDRNGLRVV 309

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  +  +++  ++  +D++  +  N+  +   + P  M L  +L  ++ HRREV+ 
Sbjct: 310 VDMKKDANAQVILNYLYKNTDLQVSYNYNVVAIVD-KRPVQMGLAPMLDAFIEHRREVIE 368

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDA 430
           RRS F ++  + R  IL+GL+ A   +DEIIA+IR                  ++ Q +A
Sbjct: 369 RRSRFDLKKKEDRCHILEGLIKAVSVLDEIIALIRASKDKADSKRRIMDAFAFSDAQAEA 428

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RL  L   +  Q++ E   LL E E++  +L + K     +  E+ EVK+ F    
Sbjct: 429 IVTMRLYRLSSTDITQLREEYAALLNEIEELHDILENPKMLKKVMIRELNEVKKAFKTP- 487

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                R T  E    +    + AMI  E +   IS  G+ + +   S   S         
Sbjct: 488 -----RLTSIEHEIEEIVIDKLAMINSEQVMFTISRDGYFKRVSMRSYGASRDDMTGLKE 542

Query: 551 LKI---ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
                     +T D +L  +T G     P  ++   R       I   I ++  + I  A
Sbjct: 543 GDHLVGYGEVNTLDHVLFFTTQGTYGYTPVYDVEESRWKEIGSHINSTIRISGEEKITDA 602

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMK-LVVKVTGDH 660
           FV   + +   ++ V+  G        E  ++   K  + +K+   + +   +V    D 
Sbjct: 603 FVLRSFATNAYMISVTKNGLVKKTAVREYEVSRNNKTMSNMKLLDGDAVVKTMVAYAYDE 662

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +  +N  +  + +  IPE S R KGV+  +     I    C    +    I    +  
Sbjct: 663 ILIASKNGFVSRYPVSLIPETSPRSKGVKAMNLVLDEIVSA-CISHGDASQLIVFTDQCQ 721

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   GS++ K
Sbjct: 722 MKRIKLSDVDVTGRPTKGSMICK 744


>gi|72383169|ref|YP_292524.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str.
           NATL2A]
 gi|72003019|gb|AAZ58821.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str.
           NATL2A]
          Length = 827

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 222/764 (29%), Positives = 372/764 (48%), Gaps = 43/764 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E +K +SL   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAKERLKPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPERP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVR  Q F  RYP++ G GNFG+ID D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRQVQVFNSRYPILDGHGNFGSIDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++ + IL  +D++ VDF   ++    EP V P++ P L+ NG++GIAVGMATS
Sbjct: 121 TETRLAPISNDAILSEIDQETVDFSPNFDGSQQEPDVLPAQLPFLILNGSTGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EA +A+I  P ++ EKLLE I GPDFPTGG I+ S   I E+Y  GRG  
Sbjct: 181 IPPHNLNEVVEALIAIIKKPSLNEEKLLEIIPGPDFPTGGEILVS-NGIKETYTKGRGSI 239

Query: 251 RVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EE+  G        I+++E+PYQ+ K+  IEK+A+L+   +I  + DIRDES
Sbjct: 240 TMRGIARIEEINPGKGKHKRSGIIISELPYQLNKASWIEKLADLVNNGKISGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   +L    R  DP  +++ ++  + +++ F   +  L     P  + L  +L  +L
Sbjct: 300 DRDGMRILVEVKRDSDPKKILDFLYQKTSLQSNFGAILLALV-NGQPVQLTLKKLLNNFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
             R   +  RS++ ++ I  R EI+  L+ A  N+ ++I +I           +      
Sbjct: 359 EFRENTILLRSNYLLKNIKNREEIVDALIQATNNVKKVIDLIEKSKDTPEAKSNLIISLK 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q D IL + L+ +  LE+  +K+EL +L  ++ +++ ++N  +     +  E++++
Sbjct: 419 INERQADGILGMPLKKITGLEKDSLKNELKDLKTKRAELELIINDKENLMKVMVKELKDL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT--------------VVISNRG 528
           K+ F       +RRT   E   A  A         + +               ++ SN  
Sbjct: 479 KKRFG-----SKRRTKLIEGGDALIAEKMANQRPNKELQRINALKELSKDSEIIIQSNNE 533

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIA----LHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
                      L      +     +            +IL +S +GK   L        +
Sbjct: 534 IKIIPSLTIKKLKLKEINQERKDILPAKLIWPIKNEPKILAVSQEGKIGLLK-WEFAGQK 592

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  L   L  N  I+            + ++S+ G    +  +EI   + +  T L
Sbjct: 593 PGPLKQFLPAGLE-NDKIINLIPLTEIRDISIGLISTDGKFKRISINEISDISNRSTTIL 651

Query: 643 KVSSEEKMKLVVKVTGDHVA-VVGENRKLLIFS--IDQIPEMSR-GKGVRLQSY-KDGGI 697
           K+    K+K  +    +    +V +  +++      +  P M +  +G  +     +  I
Sbjct: 652 KLKDSVKLKSCILCKENSYLYIVSDIGRIIKIKITENDFPFMGKLAQGTNIIKLFPNENI 711

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
            + + F+  +    I    + +    +     + K+G +G++  
Sbjct: 712 VEALSFQEKKNKDLILITNKGFFVKHSTKEITISKKGALGTMGI 755


>gi|325661697|ref|ZP_08150320.1| hypothetical protein HMPREF0490_01055 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471950|gb|EGC75165.1| hypothetical protein HMPREF0490_01055 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 746

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 214/762 (28%), Positives = 373/762 (48%), Gaps = 51/762 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ V        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MNEQQVIRTEYSDVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+Y++LV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGMVLVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE+R+ ++ +   L  +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TESRLAKITQEAYLADLDKDIVDFVPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ E+ +A  A + N EI+ E+LL Y+ GPDFPTGGI+V +++ +   Y  G G  
Sbjct: 181 IPTHNLGEVIDAVKAYMRNNEITTEELLTYLKGPDFPTGGIVV-NKDDLPSIYETGTGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +  VE    G   +V++EIPY +  +   + +  +  L+ AK+   + DI ++S++
Sbjct: 240 KLRGKVEVENGKGGKKRLVISEIPYTMIGAGIGKFLNDVCALVEAKKTNDIVDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +   +      P+ M L  I++  +  
Sbjct: 300 EGIRIVLELKKDADIENLKNMLYKKTRLEDTFGV-NMLAVADGRPETMGLRQIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------- 419
           + E++ R+    +     + EI +GL+ A   ID II I+R     K             
Sbjct: 359 QFELMTRKYKTLLAKELAKKEIQEGLIKACDVIDLIIEILRGSKSIKDAKECLIHGTVEN 418

Query: 420 -------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                        +   TE Q  AIL +RL  L  LE   +  E +  L   EK + +LN
Sbjct: 419 ITFKTAASKKKAAKLCFTEKQATAILEMRLYKLIGLEIEALMKEHEETLKNIEKYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +     N I  E+   K+ ++       RRT         +A  ++  +E++ + +++  
Sbjct: 479 NYDSMTNVIIDELEGYKKAYA-----RERRTVI---ENGKEAIYEENKVEEQDVILLLDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            G+ +++   + + +       +     +    T ++ + +  GK + +   ++  G+  
Sbjct: 531 FGYAKTVDVATYERNKEAADSENK--HIVPCKNTGKVCIFTNTGKMHQVKVSDIPYGKFR 588

Query: 587 GE--AIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            +   I  L + +  Q+ +     +      KLL V+ +     V   E + + R     
Sbjct: 589 DKSVPIDNLGNYDSAQEEIVYLCAEEELKDAKLLFVTRQSMLKQVAGEEFLVSKRTT-AA 647

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGIS 698
            K+  E+++  V+KV    ++ +  E    L F + ++PE  +G  GVR     K   I 
Sbjct: 648 TKLQEEDEVVAVIKVLEEQNIVLQTEGGYFLRFLLSEVPEKKKGAVGVRGMKLQKSDRIE 707

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            +  F        +D+ G    +  +     L KR G G+  
Sbjct: 708 QIYLFADG-----VDTKGSYQEKEVSLNRLKLNKRDGKGTKT 744


>gi|124024717|ref|YP_001013833.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
 gi|123959785|gb|ABM74568.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
          Length = 827

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 223/764 (29%), Positives = 372/764 (48%), Gaps = 43/764 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E +K +SL   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAKERLKPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPERP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVR  Q F  RYP++ G GNFG+ID D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRQVQIFNSRYPILDGHGNFGSIDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++ + IL  +D++ VDF   ++    EP V P++ P L+ NG++GIAVGMATS
Sbjct: 121 TETRLAPISNDAILSEIDKETVDFSPNFDGSQQEPDVLPAQLPFLILNGSTGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EA +A+I  P ++ EKLLE I GPDFPTGG I+ S   I E+Y  GRG  
Sbjct: 181 IPPHNLNEVVEALIAIIKKPSLNEEKLLEIIPGPDFPTGGEILVS-NGIKETYTKGRGSI 239

Query: 251 RVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EE+  G        I+++E+PYQ+ K+  IEK+A+L+   +I  + DIRDES
Sbjct: 240 TMRGIARIEEINPGKGKHKRSGIIISELPYQLNKAGWIEKLADLVNNGKISGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   +L    R  DP  +++ ++  + +++ F   +  L     P  + L  +L  +L
Sbjct: 300 DRDGMRILVEVKRDSDPKKILDFLYQKTSLQSNFGAILLALV-NGQPVQLTLRKLLNNFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
             R   +  RS++ ++ I  R EI++ L+ A  N+ ++I +I N         +      
Sbjct: 359 EFRENTILLRSNYLLKNIKNREEIVEALIQATNNVRKVIELIENSKDTPEAKSNLIISLK 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q D IL + L+ +  LE+  +K+EL +L  ++ +++ ++N  +     +  E++++
Sbjct: 419 INERQADGILGMPLKKITGLEKDSLKNELKDLKTKRAELELIINDKENLMKVMVKELKDL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT--------------VVISNRG 528
           K+ F       +RRT   E   A  A         + +               ++ SN  
Sbjct: 479 KKRFG-----SKRRTKLIEGGDALIAEKMANQRPNKELQRINALKELSKDSEIIIQSNNE 533

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIA----LHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
                      L      +     +            +IL +S +GK   L        +
Sbjct: 534 IKIIPSLTIKKLKLKESDQERKDILPAKLIWPIKNEPKILAVSQEGKIGLLK-WEFAGQK 592

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  L   L  N  I+            + ++S+ G    +  +EI   + +  T L
Sbjct: 593 PGPLKQFLPAGLE-NDKIINLIPLTEIRDISIGLISTDGKFKRISINEISDISNRSTTIL 651

Query: 643 KVSSEEKMKLVVKVTGDHVA-VVGENRKLLIFS--IDQIPEMSR-GKGVRLQSY-KDGGI 697
           K+    K+K  +    +    +V +  +++      +  P M +  +G  +     +  I
Sbjct: 652 KLKDSIKLKSCILCKENSYLYIVSDIGRIIKIKITENDFPFMGKLAQGTNIIKLFPNENI 711

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
            + + F+  +    I    +      +     + K+G +G +  
Sbjct: 712 VEALSFQEKKNKDLILITNKGSFVKHSTKEITISKKGALGIMGI 755


>gi|91789023|ref|YP_549975.1| DNA topoisomerase IV subunit A [Polaromonas sp. JS666]
 gi|91698248|gb|ABE45077.1| DNA topoisomerase IV subunit A [Polaromonas sp. JS666]
          Length = 784

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 267/761 (35%), Positives = 395/761 (51%), Gaps = 49/761 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            ++   + E     SL    +  YL YALS +K RA+PD+ DG KPV RRI+++M+ MGL
Sbjct: 6   PDAVAPIPEPADQDSLAAYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMARMGL 65

Query: 67  D-------FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
                    GA   KSAR+VG+V+GK HPHGDQ+ YD++VR+AQ F QRYPL+ GQGNFG
Sbjct: 66  GFGGANGASGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSQRYPLVDGQGNFG 125

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           + DGD AAA RYTEAR+ ++  L+L  +DE  VDF   Y+    EP   P++ P  L NG
Sbjct: 126 SRDGDGAAAMRYTEARLARITTLLLDELDEGTVDFAPNYDGSFEEPRQLPARLPFTLLNG 185

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            SGIAVG+AT IPSHN++E+ +A +ALI  P +S E+L   I GPD+P GG I+ S   I
Sbjct: 186 ASGIAVGLATEIPSHNLREVADACVALIKTPRLSDEELYTLIAGPDYPGGGQIISSTAEI 245

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y  GRG  +VRARW +E++ RG W +VV E+P  V   R++E+I EL   K     +
Sbjct: 246 AAAYSTGRGSLKVRARWKIEDLARGQWQLVVQELPPGVSTQRVLEEIEELTNPKIKAGKK 305

Query: 300 DIRDE--------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            +  E                        VR+V  PK   +    L+ ++   + +E+  
Sbjct: 306 ALSQEQVQLKQTVLSVLDVVRDESSKDAAVRLVFEPKTSRIGQSELINTLLAHTSLESSA 365

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
            +N+ ++ +   P    L  +L EW+  R+  + RRS  R+  +  R+ IL+G  +  LN
Sbjct: 366 SINLTMVGLDGKPTQKTLRQMLGEWIEFRQATVQRRSQHRLDKVLDRIHILEGRQLVLLN 425

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           IDE+IAIIR  D+PK  +++RFSL+E Q + IL +RLR L +LE  +I+ EL  L  E+ 
Sbjct: 426 IDEVIAIIRQSDEPKAALIARFSLSERQAEDILEIRLRQLARLEAIKIEQELKTLREEQG 485

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           K++ +L S       +  EI    + F+       RRT      +A+K  + +  +  EP
Sbjct: 486 KLEEILGSPAALRRLLVKEIEADAKQFADP-----RRTLI----QAEKKAVLEVKVLDEP 536

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +TVV+S +GW+R+   H  D ++  FK GD L       T D +L   + G+ Y++P  +
Sbjct: 537 VTVVVSAKGWVRARSGHGHDAASFAFKAGDGLYATFECRTVDTLLAFGSRGRIYSVPVAS 596

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L   RG G+ +  LIDL     +V  F   +   LL+ +S G  F+     + +  + GK
Sbjct: 597 LPGARGDGQPLTTLIDLESGTQLVHYFAGPANATLLLSASGGYGFLATVENMTSRLKAGK 656

Query: 640 TFLKVSSEEKMKLVVKVTG----------DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL 689
            F+  +  E +     V+G           HVA      ++L F I ++       G R 
Sbjct: 657 AFISCAEGETVCRPSHVSGGTGATPLNPATHVACASTGGRILTFEIAELKLQ--AAGGRG 714

Query: 690 QSYKDGGISDVICFKICEGLTWIDSA-GRSYNRSENDLLGW 729
               D    D +        +      GR     E  L   
Sbjct: 715 LMLLDLDAKDTLAGAAAYTRSVKIEGIGRGGKAREETLEIR 755


>gi|88856908|ref|ZP_01131560.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
 gi|88813876|gb|EAR23746.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
          Length = 819

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 232/773 (30%), Positives = 369/773 (47%), Gaps = 42/773 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M        ++   E ++ + +   ++  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MATPTKPTPDSPAGERIEDIDVTTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMGL       KS+R+VG+V+GKLHPHGD S+YD++VRL Q F+ R PLI G GNFG+
Sbjct: 61  MSEMGLRPEKGHVKSSRVVGDVMGKLHPHGDASIYDAMVRLTQSFILRVPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +   +DED VDF   Y+   ++P V P+ FPNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLQASAIAMTDDLDEDVVDFIPNYDNSTTQPEVLPAAFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E+  AA  L+ +P+ S+E+L++++ GPD PTGG I+     + 
Sbjct: 180 SGIAVGMATNMAPHNLIEVVGAARHLLSHPDASLEELMQFVPGPDLPTGGKII-GLAGVK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG F+ RA+  VE +      +VVTE+PY V   R+IEKI + + AK+I  + D
Sbjct: 239 DAYANGRGAFKTRAKVSVESITARKMGLVVTELPYLVGPERVIEKIKDGVNAKKIVGISD 298

Query: 301 IRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +  +    ++        PD ++E ++ L+ +E  F +N   L     PQ + L  
Sbjct: 299 VTDLTDRNHGLRLVIGIKTGFSPDAVLEQLYRLTPLEDNFSINAVTLVD-GRPQTLGLKA 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPV 416
           +L+ +L HR +V+ RRS+FR+     R+ +++GLL+A ++IDE+I +IR  D     +  
Sbjct: 358 LLEVFLKHRLQVVTRRSTFRLTKHRERLHLVEGLLVAIVDIDEVIQVIRQSDDSDQARTR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +   F L+E Q + IL LRLR L K    ++++E D L AE  ++++LL+        ++
Sbjct: 418 LRDVFDLSELQAEYILELRLRRLTKFSRIELEAEADKLRAEIARLEALLSDDTLIRALVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA--------MIEKEPITVVISNRG 528
            E+ +V + F        RRT   E   +   T + A         I  +P  V++S  G
Sbjct: 478 DELEQVADKFGTP-----RRTLLTEAPASIATTSRSAARKNLPVLEIADDPCVVLLSTTG 532

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR--ILLLSTDGKAYTLPAGNLLSGRGH 586
            +  +     D      +      I     TT R  I  ++  G+     A +L S    
Sbjct: 533 RVIRVAVAEGDSLLAAPRRSKHDAIRSRVTTTSRTEIGAITNRGRLIRFTAMDLPSVPSS 592

Query: 587 GE------AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                    I   + +   + ++     DS   + + +  G    V        ++    
Sbjct: 593 SVQLDAGAKINEYLAIESKERVLALVSLDSDQPIALGTRLGTVKRVIPGGW--PSKPEFE 650

Query: 641 FLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS 698
            + +   +++        D  +  +  N +LL FS   +        G+       G   
Sbjct: 651 VIALKDGDELVGAAHSPDDSELTFITSNTQLLHFSASAVRPQGLTAGGMAGVRVDAGASV 710

Query: 699 DV----------ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                       I   +      I        +           RG  G    
Sbjct: 711 IFFDAIDAGSAPIAVTVSGSSATIAGTDPGRAKVSAFEQFPAKGRGTGGVRAH 763


>gi|113953878|ref|YP_729244.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
 gi|113881229|gb|ABI46187.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
          Length = 820

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 229/768 (29%), Positives = 385/768 (50%), Gaps = 49/768 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V++++L   ++  YL YA+S I  RA+PD+RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAEERVQSIALHHEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+ +++   +L  + +D VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLARISHEGLLDEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL+ NP++S  ++L+ I GPDFPTGG ++     + E+Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALVQNPDLSENEVLKLIPGPDFPTGGEVLLG-SGVRETYLRGRGSI 239

Query: 251 RVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV           ++VTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHIEEVHPGKGKHRRNAVIVTELPYQLSKAGWIEKLAEHVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DP+ ++  +   + +++ F   +  L     PQ + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPETVLTDLQRRTSLQSNFGAILLALVD-GRPQQLTLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            +R   + RR++  ++  + R+E+++GL  A  ++ ++IA+I+            +  F 
Sbjct: 359 DYRELTIIRRTNHALRKTEDRLEVVEGLTTALASLQQVIAMIQEARDAAKARASLMVHFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ E D+L  E++++  LL +  Q  + +  E+R++
Sbjct: 419 LSERQADAVLAMPLRRLTGLEQESLRKEADDLRKERQRLTLLLENRDQLLDALIQELRQL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-------------KEPITVVISNRGW 529
           K+ F+       RRT   E      A    +                     ++I + G 
Sbjct: 479 KKRFATP-----RRTRLVEGGDHLLAERAASQRPNAELQRRQALDALPSDSRLLIQDDGQ 533

Query: 530 IRSLKSHSVDLSALHFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           ++ +    +    L+       E     I+L      R+L ++  G+   +        +
Sbjct: 534 VKIVSPQLLGRLHLNDPIPMGDEPSPALISLPIQPPPRLLAVTVSGRVALVR-WEFAGQQ 592

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVY--------DSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  L   L  ++ +V+            + T  L +++S G    +   +I   + 
Sbjct: 593 QGTLERFLPTALEGDE-VVSLLPLPNPEDLVANETKSLGLLTSDGRFKRLPLKDIQELSG 651

Query: 637 KGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSY 692
           +  T LK+     +K  +    G  VAV+ +  ++L    ++  +P M +  +G      
Sbjct: 652 RAATVLKLKEGVSLKAALICQDGADVAVISDIGRVLRLQAEETNLPVMGKLAQGPITMRL 711

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL-GWLGKRGGVGSL 739
             G           E  T I  A ++      +L      KRG +G +
Sbjct: 712 LPGEQLVTAIAGHAERPTTILLASQTGRLQWLELTCIRSCKRGDLGEI 759


>gi|194476877|ref|YP_002049056.1| DNA gyrase/topoisomerase IV, subunit A [Paulinella chromatophora]
 gi|171191884|gb|ACB42846.1| DNA gyrase/topoisomerase IV, subunit A [Paulinella chromatophora]
          Length = 818

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 222/767 (28%), Positives = 386/767 (50%), Gaps = 32/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +VEE +++++L   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM E+ L    A
Sbjct: 1   MVEERIQSIALHHEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELDLTPNHA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRLAQ F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLAQNFANRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   +L  +    V+F   ++    EP+V P++ P LL NG SGIAVGMATS
Sbjct: 121 TEIRLALIASDGLLSEIGSSTVEFTPNFDNSQHEPIVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +P HN+ EI  A +A+I  P +S + LL+ I GPDFPTGG ++ ++  I E+Y  GRG  
Sbjct: 181 VPPHNLGEIVNALIAIIQKPNLSDKTLLDLIPGPDFPTGGEVLINK-GIQETYLEGRGSI 239

Query: 251 RVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV         + +V+TE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 TMRGVAHIEEVRLSKGRHRRFAVVITELPYQLNKAGWIEKLAEKVNYGKIIGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    +  +P+ ++  +   +  +T F   +  L     P  + L  +L+ +L
Sbjct: 300 DRDGTRLVVELRKDTEPEKVLSILERRTSFKTNFSSIILALVD-GQPVQLNLRQLLEHFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID---EIIAIIRNEDKPKPVMVSRFS 422
           ++R   + RR+ + ++  + R+E+++GLL A  ++    EII  +      K  +   F 
Sbjct: 359 SYREITIIRRTQYTLKRKENRLEVVEGLLRALFSLTRIVEIIQALTESSNAKLNLRVHFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILN+ LR L   E+  +  E ++L  +++K+++LL   +   + I  E++ +
Sbjct: 419 LSDIQSDAILNMPLRRLTSFEKENLHIEANSLRLDRKKLNNLLKKREALLSTIMNELKNL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP--ITVVISNRGWIRSLKSHSVDL 540
           K+ F+       R  +F  ++ +   + Q+ ++E  P    ++IS+ G ++ +    ++ 
Sbjct: 479 KKRFATPRRTRLREESFNLLNSSANVSQQEQILENLPKTNQLIISHDGQVQIIAPQLINH 538

Query: 541 SA-----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                           ++ L       IL+ S+ G+   L        +    +  L   
Sbjct: 539 LHLEATLTSGHHPSPPQLLLPISQHPSILIFSSSGRVGLLR-WEFAEQQPRNISEFLPNS 597

Query: 596 LNHNQDIVTAFVYDSTCKLL-------VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L     ++     +    L+       ++SS G+   +   E    + +  T L++    
Sbjct: 598 L-LGDQVIQILPLNLEANLIPSVSSIGLLSSDGHFKRLPIEEFHDLSGRAVTILRLKEGV 656

Query: 649 KMKLVVKV-TGDHVAVVGENRKL--LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +  VV+    + + +     +L  +    + +P M R  +G  L     G         
Sbjct: 657 SLLRVVECFENEELIIGSSLGRLLKIRIQTNILPMMKRTAQGTLLLKLLPGETVIGATCI 716

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             EG   + +  +   +  N       +R  +G +  +        +
Sbjct: 717 KEEGSLML-ATTKGQIKRLNSSSLRSFERCQLGQIGLRFRDSDDALV 762


>gi|226323236|ref|ZP_03798754.1| hypothetical protein COPCOM_01008 [Coprococcus comes ATCC 27758]
 gi|225208426|gb|EEG90780.1| hypothetical protein COPCOM_01008 [Coprococcus comes ATCC 27758]
          Length = 746

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 213/761 (27%), Positives = 381/761 (50%), Gaps = 51/761 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MEESQIIRTEYSELMKKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+Y++LV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TEAR+ ++ +   L  +D+D +DF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TEARLAKITQEAYLADLDKDIIDFVPNFDETEKEPAVLPVRIPNLLLNGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ EI +A  A + N +I+ ++L++YI GPDFPTGGI+V +++ + E Y  G G  
Sbjct: 181 IPTHNLGEIVDAVKAYMKNNDITTKQLMKYIKGPDFPTGGIVV-NKDDLAEIYETGTGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +  VEE+  G   IV++EIPY +  +   + +  +  L+  K+   + DI ++S++
Sbjct: 240 KIRGKVDVEEIKGGRKKIVISEIPYTMIGAGIGKFLNDVCNLVETKKTSDIVDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    R  D D L+  ++  + +E  F +   +      P+V+ L  I++  +  
Sbjct: 300 EGIRIVIEVKRDADVDNLINMLYKKTRLEDTFGV-NMLAVADGRPEVLGLKRIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------- 414
           + E+  R+    ++    + EI +GL+ A   ID II I+R     +             
Sbjct: 359 QFELATRKYKTLLKKEQDKKEIQEGLIKACDVIDLIIEILRGSSSIRDAKECLTTGATEK 418

Query: 415 --------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                     M S    T+ Q  AIL +RL  L  LE   +  E +  LA   K + +LN
Sbjct: 419 IKFKSKRSEKMASMLRFTDRQAQAILEMRLYKLIGLEIEALMKEHETTLANIAKYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I  ++  +K+ ++      +R+T       A++A  ++  ++++ + +++  
Sbjct: 479 NYDSMAQVIIDDLDALKKEYA-----VKRKTKI---ENAEEAVFEENKVQEQEVVLLMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            G+ +++     + +     + +     L    T ++ L ++DGK + +   +L  G+  
Sbjct: 531 FGYAKTVDGSVYERNREAADKENK--YILRCMNTGKLCLFTSDGKMHQIKVMDLPYGKFR 588

Query: 587 GE--AIQLLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            +   I  + + +  ++ +     D      K L V+ +G    V  SE    T++    
Sbjct: 589 DKGFPIDNVSNFDSTKEEIVYLCDDRELFFSKFLFVTKQGMIKKVAGSEFQ-VTKRTIAA 647

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGIS 698
            K+  E+ +  +  +     V ++ EN  +L F  +++ E  +G  GVR     K+  + 
Sbjct: 648 TKLQDEDALVSIRPIRDVQDVVLMTENGFVLRFPAEEVSEKKKGAVGVRGMKLQKNDSVE 707

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           +V  F+       I      + +          KR G G+ 
Sbjct: 708 EVYLFEEGTESKVIF-----HEKEVTLNRLKRAKRDGTGTR 743


>gi|309800473|ref|ZP_07694628.1| DNA gyrase, A subunit [Streptococcus infantis SK1302]
 gi|308115892|gb|EFO53413.1| DNA gyrase, A subunit [Streptococcus infantis SK1302]
          Length = 586

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 217/588 (36%), Positives = 345/588 (58%), Gaps = 20/588 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ ++L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKELMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTSFGF-NMLAIQNGVPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +  +      +S+F L+E Q 
Sbjct: 359 VTRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +         + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTEL--MVGEVLTLEDEDLIEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
                K+ D ++  +   T D +L  +  G+ Y L    +       +
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAK 579



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK-LVVKVTGDHVAVVG 665
           + +  L+ +S+KG    +++ E  A  R  +G     V  ++ ++ LV   T DH+    
Sbjct: 499 EESDVLITLSNKGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFT 558

Query: 666 ENRKLLIFSIDQIPEMSRGK 685
              ++      +IPE  R  
Sbjct: 559 NKGRVYRLKGYEIPEYGRTA 578



 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 641 FLKVSSEEKMKLVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG-I 697
            L +  E+       +    V + +     +     D+     RG +GV+    KD   +
Sbjct: 489 VLTLEDED------LIEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFV 542

Query: 698 SDVICFKICEGLTWIDSAGRSYNRS 722
            +++     + L +  + GR Y   
Sbjct: 543 RELVSTSTHDHLLFFTNKGRVYRLK 567



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 11/62 (17%)

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGK 749
           + +D  +       I E    I  + + Y +  +       KRGG G    +G   +   
Sbjct: 491 TLEDEDL-------IEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGV---QGTGVKDDD 540

Query: 750 FL 751
           F+
Sbjct: 541 FV 542


>gi|331084710|ref|ZP_08333798.1| hypothetical protein HMPREF0987_00101 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410804|gb|EGG90226.1| hypothetical protein HMPREF0987_00101 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 746

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 212/762 (27%), Positives = 373/762 (48%), Gaps = 51/762 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ V        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MNEQQVIRTEYSDVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+Y++LV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGMVLVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE+R+ ++ + + L  +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TESRLAKITQEVYLADLDKDIVDFVPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ E+ +A  A + N EI+ E+LL Y+ GPDFPTGGI+V +++ +   Y  G G  
Sbjct: 181 IPTHNLGEVIDAVKAYMRNNEITTEELLTYLKGPDFPTGGIVV-NKDDLPSIYETGTGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +  VE    G   +V++EIPY +  +   + +  +  L+ AK+   + DI ++S++
Sbjct: 240 KLRGKVEVENGKGGKKRLVISEIPYTMIGAGIGKFLNDVCALVEAKKTNDIVDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +   +      P+ M L  I++  +  
Sbjct: 300 EGIRIVLELKKDADIENLKNMLYKKTRLEDTFGV-NMLAVADGRPETMGLRQIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------- 419
           + E++ R+    +     + EI +GL+ A   ID II I+R     K             
Sbjct: 359 QFELMTRKYKTLLAKELAKKEIQEGLIKACDVIDLIIEILRGSKSIKDAKECLIHGTVEN 418

Query: 420 -------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                        +   TE Q  AIL +RL  L  LE   +  E +  L   EK + +LN
Sbjct: 419 ITFKTAASKKKAAKLCFTEKQATAILEMRLYKLIGLEIEALMKEHEETLKNIEKYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +     N I  E+   K+ ++       RRT         +A  ++  +E++ + +++  
Sbjct: 479 NYDSMTNVIIDELEGYKKAYA-----RERRTVI---ENGKEAIYEENKVEEQDVILLLDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            G+ +++   + + +       +     +    T ++ + +  GK + +   ++  G+  
Sbjct: 531 FGYAKTVDVATYERNKEAADSENK--HIVPCKNTGKVCIFTNTGKMHQVKVSDIPYGKFR 588

Query: 587 GE--AIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            +   I  L + +  Q+ +     +      KLL V+ +     V   E + + R     
Sbjct: 589 DKSVPIDNLGNYDSAQEEIVYLCAEEELKDAKLLFVTRQSMLKQVAGEEFLVSKRTT-AA 647

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGIS 698
            K+   +++  ++KV    ++ +  E    L F + ++PE  +G  GVR     K   I 
Sbjct: 648 TKLQEADEVVAIIKVLEEQNIVLQTEGGYFLRFLLSEVPEKKKGAVGVRGMKLQKSDRIE 707

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            +  F        +D+ G    +  +     L KR G G+  
Sbjct: 708 QIYLFADG-----VDTKGSYQEKEVSLNRLKLNKRDGKGTKT 744


>gi|152965512|ref|YP_001361296.1| DNA topoisomerase IV subunit A [Kineococcus radiotolerans SRS30216]
 gi|151360029|gb|ABS03032.1| DNA topoisomerase (ATP-hydrolyzing) [Kineococcus radiotolerans
           SRS30216]
          Length = 826

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 233/768 (30%), Positives = 365/768 (47%), Gaps = 47/768 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V E +  + +   ++  +L YA S I  RA+PD RDG KPV RRI++ M +MGL    A 
Sbjct: 13  VPERIVDIDVEQEMQGAFLEYAYSVIYSRALPDARDGLKPVQRRILYMMQDMGLVPTRAH 72

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++YD+LVR AQPF  R PL+ G GNFG++D    AA RYT
Sbjct: 73  VKSARVVGEVMGKLHPHGDVAIYDALVRQAQPFTMRLPLVDGHGNFGSLDA-GPAAQRYT 131

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   A L+  G+DED VDF   Y++  +EP V P+ FPNLL NG SGIAVGMAT++P
Sbjct: 132 EARMAPAALLMTTGLDEDVVDFVPNYDDRLTEPGVLPAAFPNLLVNGASGIAVGMATNMP 191

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  L+ +P+  +  L+ ++ GPDFPTGG +V   E I ++Y  GRG FR 
Sbjct: 192 PHNLVEVVNAARHLLKHPDADLPALMRFVPGPDFPTGGRVV-GLEGIRDAYATGRGSFRT 250

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA   +E++GR    IVVTE+PY     RLIEKIA+ +  K++  + D+ D S       
Sbjct: 251 RASVRIEKIGR-RQGIVVTELPYGAGPERLIEKIADNVKNKKLQGVADVTDLSDRHHGMR 309

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++        P+ ++E ++ L+ ME  F +N   L     P+ + L  +L+ ++ HR +V
Sbjct: 310 LVIEVKNGFVPEAVLEQLYRLTPMEESFGINNVALV-EGQPRTLGLKELLEVFIGHRVDV 368

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQV 428
           + RR+ FR+     R+ ++ GLL A ++IDE+IAI+R+ D  +     +  RFSL+E Q 
Sbjct: 369 VRRRTRFRLGKAQDRLHLVDGLLTAIVDIDEVIAIVRSSDDAQAALARLTERFSLSEAQG 428

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+++LR L +    +++ E   L A   ++ ++L+   +    +  E+  V      
Sbjct: 429 RYILDMQLRRLTRFSRIELEREQAELRATIAQLQAILDDEGRLRGLVGDELAAVAAEHGT 488

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                RR         A  A   Q  I  +P  V++S+ G +    S     +       
Sbjct: 489 P----RRTVLLTSSGPASGAAPTQLEIGDDPCWVLLSSAGLLARTGSAEPLGTEGRRSRH 544

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQLLIDLNHNQ 600
           D +  A  A     + +L++ G+   +P  +L              G  ++  +     +
Sbjct: 545 DLVVAAAPATARGHVGVLTSAGRLVRVPVLDLPVLPETAGRPNLAGGTGVKEFVTFGKGE 604

Query: 601 DIVTAFVY-------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------E 647
             +T                  + ++ G    V    +    R+    + +        +
Sbjct: 605 RALTIVPLPVTGVEDPDDPGFALATAGGVVKRVVLDPLG--NREEVEVITLKDLGPRQRD 662

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           E +  V   TG + +  V  + +LL F    +    R   G+       G     +    
Sbjct: 663 EVVAAVGLTTGEEELVFVTSDAQLLRFPAALVRPQGRAAAGMAGIKLSAGARVVAMTAVA 722

Query: 706 CE--GLTWIDSAGR--------SYNRSENDLLGWLGKRGGVGSLVPKG 743
            +      +  AG            +           R   G    + 
Sbjct: 723 PDAVDPVVVTVAGDSTSGVSQLGSVKVTPLAEYPPKGRATGGVRCHRF 770


>gi|296120380|ref|YP_003628158.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
 gi|296012720|gb|ADG65959.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
          Length = 781

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 254/767 (33%), Positives = 397/767 (51%), Gaps = 42/767 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE-M 64
           ++ +    E+ ++   +      RYL YA+S I+ RA+PD+RDG KPV RRI++ M E +
Sbjct: 1   MTENQ---EDRIQFREISSETRRRYLNYAMSVIQSRALPDVRDGLKPVQRRILYVMYEEL 57

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L   A  +K A+I G+  G  HPHG+QSVYD+LVRLAQ F  RYPL+ GQGNFG+I G 
Sbjct: 58  RLMADAKTRKCAKISGDTTGNYHPHGNQSVYDTLVRLAQDFTLRYPLVDGQGNFGSIMGL 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR+T +AE ++  +  D V+ R  Y+    EPVV P++FPNLL NGT+GIA
Sbjct: 118 PAAAERYTEARLTGIAEQLMNELRFDTVEMRPNYDGTRKEPVVLPTRFPNLLVNGTAGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++P HN++E+ EA + LI NPE S ++LL++I GPDFP GG ++  R++++  Y 
Sbjct: 178 VGMATNMPPHNLKEVLEACIHLITNPEASTKELLKFIKGPDFPLGGRMITDRKAMLPIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            GRG F+VRA W +++  R      +V+  +PY V+   L+ +I  +I ++++P L +  
Sbjct: 238 EGRGAFKVRAEWRMDKEKRAEVEDRVVIYSVPYGVETGPLLAEIGNVIASRKLPQLINAA 297

Query: 303 DESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQVMPL 357
           DE+ +     V+    +  DP+ +M  ++  + +E  F  N  VL         P  +PL
Sbjct: 298 DETDDKHGLRVVLELKKGSDPESVMAFLYKKTPLEQNFNYNSTVLIPDDQGLLTPARLPL 357

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPK 414
             +L E+L  R +V+ +R  F++  +  R+ IL+GL I +  ID+ I IIRN +      
Sbjct: 358 HRLLGEFLKFRLKVVKKRFQFQLDQLQARIHILRGLEIIFNGIDKAIKIIRNSNGKRDAC 417

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             +++ F L E Q  AIL ++L  + +LE   + +EL+    E ++I  +L    + WN 
Sbjct: 418 DKLMAAFPLDEPQTMAILEMQLYRISQLEIDTVLAELNTKQKEADRITRILAKDDRIWNV 477

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  E+RE+ E F       +RRTT    S       +   I +E   VV+S  GWI+ + 
Sbjct: 478 IEGELRELSEQFGD-----KRRTTLGS-SDEVTEFDESHYIVRENTNVVLSKDGWIKRV- 530

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
                + +   +EGD +   L   T D ++  ++DG AYT+P   +    G+GE +    
Sbjct: 531 GRLQSVESTRVREGDQVLDVLPGSTVDHVIFFASDGIAYTMPISQVPVSSGYGEPLTKHY 590

Query: 595 DLNHNQDIVTAFVYDS----------------TCKLLVVSSKGNAFIVEESEI-IANTRK 637
                  ++ A   D                    L V +++G    V       A+TR 
Sbjct: 591 KFKDGVQVIAAVTTDPRFTAVAEETAEGAEPAPPHLFVTTAQGQVMRVPLQPFRTASTRS 650

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY--K 693
           G+ F K+   + +  V  +     V +V    +L+ FS+++IP +   GKGVR      K
Sbjct: 651 GRKFCKLQEGDVVAKVELIVDQTSVFLVTREARLIHFSLEEIPVLSGAGKGVRGIRLEEK 710

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           +  +                        +   +   L  RGG G  V
Sbjct: 711 EKDLVLGAALMSRPSDVLRLKLANEKELTCGQMKYALTTRGGKGVKV 757


>gi|160878453|ref|YP_001557421.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
 gi|160427119|gb|ABX40682.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
          Length = 748

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 226/760 (29%), Positives = 368/760 (48%), Gaps = 53/760 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  +     ++  +  YA+S I  RAIPD+RDG KPV RRI+++M E+GLD     +K
Sbjct: 6   ENIIQLDFSEEMKTSFRNYAMSVIMARAIPDVRDGLKPVQRRILYSMIELGLDPKKPHRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+ +GK HPHGD S+YD+LV + +P+  + PL+ G GNFG+IDGD AAA RYTEA
Sbjct: 66  SARIVGDTMGKYHPHGDSSIYDALVHMTEPYSMQIPLVDGHGNFGSIDGDGAAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++  A  +L  +D+  V+F   ++E + EP V P+  PNLL NGT+GIAVGMAT++P H
Sbjct: 126 RLSDGAMTLLDHLDKGLVEFVPNFDESEKEPSVLPAMLPNLLINGTTGIAVGMATNMPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ E  +A IDNP+I+ E L++YI GPDFPTGG I+ S E I   Y  G G  +VRA
Sbjct: 186 NPSEVIEGVIAYIDNPDITTEGLMKYIPGPDFPTGGTIINS-EDIRNIYETGEGRLKVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           +  +E    G   IV+TEIPY V   K++L+E + +L+  K    + D+RDES+++   V
Sbjct: 245 KTEIEASDNGRKNIVITEIPYTVAGNKTKLVESLVDLMKDKVFDEIFDVRDESSKEGIRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + L+  ++  + ME  + +   +    + P V  L  ++ E+++ + E+ 
Sbjct: 305 VIEVKKDRDIENLLNGLYKKTSMEDTYGV-NLLAVKDQQPIVFKLKNLVGEFVSFQEELY 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            +     +   ++R+EI+ GL+ A   ID II I+R     K                  
Sbjct: 364 TKEYEHLLDKANKRLEIVDGLIRATDVIDLIIEILRGSSSIKQAKDCLIHGNTTEINFKT 423

Query: 420 --------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                   +   TE Q DAIL + L  L  LE  ++  E  +LL   E+  S+L + K+ 
Sbjct: 424 EASRKKAAKLDFTERQADAILAMPLSKLIGLEILRLHEENQSLLDSIEQYQSILGNKKEL 483

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           +  I   ++E K+ F+             E     K          E I ++I   G+ +
Sbjct: 484 FKVIKSNLKEYKKQFNVPRHTVLANMEIAEYVEEVK---------VEDIYILIDKFGYTK 534

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           S+ + S+  S +           +    TDR+ L +  G  Y + A  +   +   +   
Sbjct: 535 SVDNTSI--SRVSEDNLKDFVHIVKMKNTDRLCLFTAQGNMYQVKAEKIPKCKIKDKGTL 592

Query: 592 LLIDLN-HNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           +        ++I+    ++     +LL  +  G   +V   E   N R   +  K+   +
Sbjct: 593 IHNLCKVDKEEILLYIAFEDLFESQLLFTTKNGFIKLVSGIEFETN-RAMISATKLEEAD 651

Query: 649 KMKLVVKVT-------GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDV 700
            +  V+ ++          V ++ E+   L F + ++ E+ +  KGV+  + +       
Sbjct: 652 HVVSVLCLSAHTISNPDSKVILLTEDSLSLGFPLTEVSELKKTSKGVKGITLEKKDKVAF 711

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
               + E   +         +          KR   G   
Sbjct: 712 ATVALPETEFFEYQGKELSAKKV-----RNRKRAAKGQKA 746


>gi|197303042|ref|ZP_03168090.1| hypothetical protein RUMLAC_01769 [Ruminococcus lactaris ATCC
           29176]
 gi|197297897|gb|EDY32449.1| hypothetical protein RUMLAC_01769 [Ruminococcus lactaris ATCC
           29176]
          Length = 748

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 200/761 (26%), Positives = 355/761 (46%), Gaps = 51/761 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   +
Sbjct: 5   SESQIIRTEYSELMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+YD+L  +AQ F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 65  RKCARIVGDTMGKYHPHGDSSIYDALAVMAQDFKKGQILVDGHGNFGSIEGDGAAAMRYT 124

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+T+  + + L  +D++ +DF   ++E + EPVV P + PNLL NG  GIAVGMATSI
Sbjct: 125 EARLTKFTQEVCLSDLDKNVIDFGPNFDETEKEPVVLPMRVPNLLVNGAEGIAVGMATSI 184

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +   A + N  ++  +L++YI GPDFPTGGI+V +++ ++  Y  G+G  +
Sbjct: 185 PTHNLCEVIDGVKAYMKNDGVTTRQLMKYIKGPDFPTGGIVV-NKDDLLNIYETGQGKIK 243

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R +  VE++  G   +V+TEIPY +  +   + +  +  L+  K+   + DI ++S+++
Sbjct: 244 LRGKVEVEDLKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKE 303

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  D + L   ++  + +E  F +   +      P+ + L  I++  +  +
Sbjct: 304 GIRIVIELKRGADVENLKNMLYKKTRLEDTFGV-NMLAVANGRPETLGLKQIIEHHVDFQ 362

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------- 419
            E+  R+ +  ++    + E+ +GL+ A   ID II I+R     K              
Sbjct: 363 FELATRKYTTLLEREREKSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVEGKTENI 422

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                           TE Q  AIL +RL  L  LE   ++ E +  L    + + +LN+
Sbjct: 423 RFKFSISKKMAAMLRFTERQATAILEMRLYRLIGLEIEALQKEHEQTLNNIARYEDILNN 482

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                  I  E+   K+ F       R+R T  E +       ++   ++    +     
Sbjct: 483 YDSMAEVIMEELDSYKKEFG------RKRRTVVENAEEAVFEEKKVEEQEVVFLM----D 532

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
            +  +                   K  +H   T ++ + +  GK + +   +L  G+   
Sbjct: 533 RFGYAKTVDMAVYERNKEAADSENKYIVHCMNTGKLCIFTDTGKMHQVKVLDLPYGKFRE 592

Query: 588 E--AIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           +   I  + +   +++ +   + D+      KLL  +++G    V+  E     R     
Sbjct: 593 KGTPIDNVSNYTSSEEEI-VMICDAEQMRFAKLLFATAQGMIKRVDGKEFQVAKRT-IVA 650

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
            K+  ++++  V  V    ++ +   N   L F    +PE  +   GVR    +     +
Sbjct: 651 TKLQEDDRLVSVKVVNETQNLVLQTRNGYFLRFPAADVPEKKKAAVGVRGIRLQKKDELE 710

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                     T +        ++         KR GVG+  
Sbjct: 711 HTYLFEEGTETKVTYGE----KTVTLNRLKAAKRDGVGNKT 747


>gi|313904178|ref|ZP_07837557.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
 gi|313470980|gb|EFR66303.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
          Length = 744

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 209/758 (27%), Positives = 361/758 (47%), Gaps = 50/758 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G  F   ++K
Sbjct: 2   EEIIRTEYSEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMLELGTYFDRPYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +ARIVG+ +GK HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYTEA
Sbjct: 62  AARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGMPLVDGHGNFGSIEGDGAAAMRYTEA 121

Query: 135 RMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R+ +  + + L+ +D++ V+F   ++E + EP V P + PN+L NG+ GIAVGMATSIP 
Sbjct: 122 RLQKFTQEVYLKDLDKNVVNFVPNFDETEKEPEVLPVRVPNILVNGSDGIAVGMATSIPP 181

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +AA A I N +++  +L++YI GPDFPTGGI+V +++ + + Y  G G  R+R
Sbjct: 182 HNLGEVIDAAKAYIGNKDLTDRQLMKYIKGPDFPTGGIVV-NKDDLPQIYESGSGKIRIR 240

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +  VE+   G   +V+TEIPY +      + +  +A L+  ++ P + DI + S+++  
Sbjct: 241 GKVEVEKGKNGRQSLVITEIPYTMIGANIGKFLMDVAGLVENRQAPEIVDISNMSSKEGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D + L   ++  + +E  F +   +   G  P+ + L  +L  +   + E
Sbjct: 301 RIVLELKKGADVERLKNLLYKKTRLEDTFGV-NMLAVAGGRPETLSLKKVLDNFTDFQFE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---------------- 414
           +  R+    +Q    + E+ +GL+ A   ID II I+R     K                
Sbjct: 360 LATRKYQQMLQKELEKKEVQEGLIKAVDVIDLIIEILRGSKSQKQVRDCLTMGVTDGINF 419

Query: 415 -----PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                         T+ Q  AIL +RL  L  LE   +  E +  +A+  + +++LN   
Sbjct: 420 KHKSSEKQAKELCFTQRQATAILEMRLAKLIGLELDALYKENEETIAKIARYENILNDYD 479

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
                I  ++ ++K+ ++              ++  ++   +   +      V   +   
Sbjct: 480 TMAGVIVDDLEQIKKNYATPRKTVIENAEAIVLAEPEEEETELVFLMDRFGYVRTVDTSV 539

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
               K                 K   H  +TDR+ + + +G  +T+   ++   +   + 
Sbjct: 540 YDRNK----------EAADAENKYIFHCMSTDRVCVYTDNGMMHTIKVKDIPFTKFRDKG 589

Query: 590 IQLLIDLNHNQD-----IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             +    N++ D                KL+ V++ GN  IV  SE     RK  +  K+
Sbjct: 590 TPIDNLCNYSADNERVVFAGPMAEVKQKKLVFVTASGNVKIVSGSEFD-VNRKVISATKL 648

Query: 645 SSE-EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           + + + + LV     GD + +   +   L F + +IPE  +   GVR  S      ++  
Sbjct: 649 ADDADSVVLVGYADAGDFLVIQSRDGYFLRFPMTEIPEKKKTAVGVRGISLGKDDEAEAA 708

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                     I+       +  +     LGKR G G+ 
Sbjct: 709 YLVAGGNEMEIE----YRGKKVSLNKLRLGKRDGKGTK 742


>gi|325265377|ref|ZP_08132101.1| DNA topoisomerase IV subunit A [Clostridium sp. D5]
 gi|324029378|gb|EGB90669.1| DNA topoisomerase IV subunit A [Clostridium sp. D5]
          Length = 748

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 213/762 (27%), Positives = 372/762 (48%), Gaps = 53/762 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   +
Sbjct: 4   SESQIIRTEYSEVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 64  RKCARIVGDTMGKYHPHGDSSIYESLVVMAQDFKKGKILVDGHGNFGSIEGDGAAAMRYT 123

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+T+  +   L  +D++ VDF   ++E + EP+V P + PNLL NG  GIAVGMATSI
Sbjct: 124 EARLTKFTQEAYLGDLDKNIVDFGPNFDETEKEPLVLPVRVPNLLINGAEGIAVGMATSI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A  A + N +IS ++L+ YI GPDFPTGGI+V +++ ++  Y  G+G  +
Sbjct: 184 PTHNLSEVLDAVKAYMKNDQISTKQLMRYIKGPDFPTGGIVV-NKDDLLNIYETGQGKIK 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R +  VEE   G   +V+TEIPY +  S   + +  +  L+ +K+   + DI ++S+++
Sbjct: 243 IRGKVEVEEQKGGKKQLVITEIPYTMIGSGIGKFLNDVCGLVESKKTNDIVDISNQSSKE 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  D + L   ++  + +E  F +   +      P+ + L  I++  +  +
Sbjct: 303 GIRIVLELKKGADVENLKNMLYKKTRLEDTFGV-NMLAVANDRPETLGLKAIIEHHVDFQ 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF------- 421
            E++ R+ +  +     R E+ +GL+ A   ID II I+R     K              
Sbjct: 362 FELMTRKYTTMLAKEQERSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVSGVTENI 421

Query: 422 --------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                           TE Q  AIL +RL  L  LE   ++ E +  L    + + +LN+
Sbjct: 422 KFKSSISKKMAALLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLKNISRYEDILNN 481

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                N I  E+   K  +       +RRT       A++A  ++  IE++ +  ++   
Sbjct: 482 YDSMANLIMEELDSYKREYG-----RKRRTAI---ENAEEAVFEEKKIEEQEVVFLMDRF 533

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           G+ +++   + + +       +     +H   T +I + +  G+ +     +L  G+   
Sbjct: 534 GYAKTIDVTAYERNKEAADSENK--YVVHCMNTGKICIFTDTGRMHQAKVLDLPYGKFRD 591

Query: 588 E--AIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           +   I  L + + +++ +   V D+      KLL  + +G    VE +E     R     
Sbjct: 592 KGTPIDNLTNYSSSEEQI-VMVCDAEQMRFAKLLFATKQGMIKKVEGTEFQVAKRT-IAA 649

Query: 642 LKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGIS 698
            K+  E+ +  V V     ++ +  +    L F  ++IPE  +G  GVR     K   + 
Sbjct: 650 TKLQEEDILISVSVVTENQNIVLQTKGGYFLRFPAEEIPEKKKGAVGVRGIKLQKKDELE 709

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           +V  F+       +        +          +R  +G+  
Sbjct: 710 NVYLFEEGTEKKIVYGE-----KEVTLNRLRQARRDTLGTKN 746


>gi|162452727|ref|YP_001615094.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
 gi|161163309|emb|CAN94614.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
          Length = 800

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 248/750 (33%), Positives = 393/750 (52%), Gaps = 40/750 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKSAR 77
             SL    + RYL YALS I  RA+PD+RDG KPV RRI++AM  ++ L   A ++KSA 
Sbjct: 35  DTSLADEAQRRYLNYALSVITSRALPDVRDGLKPVQRRILYAMLHDLHLGPDAKYRKSAA 94

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+GK HPHGD ++YD++VRLAQ FV R PLI+G GNFG++DGD+ AA RYTEA++ 
Sbjct: 95  VVGDVMGKYHPHGDVAIYDAMVRLAQDFVMRAPLIAGHGNFGSVDGDAPAAMRYTEAKLR 154

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A  +L  + +  VDFR  Y+    EP+V PS+FPNLL NG+ GIAVGMATSIP HN+ 
Sbjct: 155 PLALELLSELGQRTVDFRPNYDGTRFEPIVLPSRFPNLLVNGSQGIAVGMATSIPPHNLG 214

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +ALI+N E++  +LL Y+ GPDFPTGG +  +++ +   Y  G+G  ++R  W 
Sbjct: 215 EVIDACVALIENRELTTHRLLSYVKGPDFPTGGQLHATKKELEAVYTAGQGSLKLRGEWQ 274

Query: 258 VEEVGRGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +EE          IV+T IPY +++  ++EKIAE+I++K++P L D+RDES  +VRIV+ 
Sbjct: 275 LEEGDGKRGAAPQIVITSIPYGIERKAIVEKIAEVILSKKLPTLVDVRDESTGEVRIVME 334

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-----PQVMPLDGILKEWLAHRR 369
            K  + D  L+M  ++  + +     +N+  L          P+ + L  IL ++L  R 
Sbjct: 335 LKRGA-DAQLVMAYLYKQTPLAINVQVNLTCLVPTDNAEIAAPRRLGLHEILTKFLDFRY 393

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
             + RR  F +  + RR+ IL+G    +  +DE+I IIR  +        ++ RF+L E 
Sbjct: 394 ATVTRRLEFELGELRRRITILEGFEKIFDALDEVIRIIRKSEGKADAAEKLMKRFTLNEE 453

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL L+L  L +LE   ++ +L    AE ++I+ LL S  ++W  +  E+ E+K  +
Sbjct: 454 QTDAILELKLYRLARLEILLVQKDLGEKRAEAKRIEGLLRSDAKRWGIVRDELVEIKGSY 513

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   +R T    S  +     +  I  E   V++S +GW++ ++    DL++   +
Sbjct: 514 G------EKRRTKVVGSIDEPEYQAEDFIVAEDANVILSAQGWVKRVRE-VKDLASTRIR 566

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGDS+  A+   T   +   S  G  Y     ++    G+G+ +Q L  L   + ++   
Sbjct: 567 EGDSVLAAVAGSTRSTVAFFSNLGACYVCRIHDVPQSTGYGDPVQKLFKLADGERLIALM 626

Query: 607 VYDSTC----------------KLLVVSSKGNAFIVEESEIIAN-TRKGKTFLKVSSEEK 649
            +D                     L ++  G  F           TR G+ F K++  ++
Sbjct: 627 SFDPRALDVPAQTPDSAEPEPPFALAITRGGLGFRFSLRPHRDPSTRSGRRFAKLNEGDE 686

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICE 707
           +  V  V G D V     +   L  +++++  +   GKG  +    +G         +  
Sbjct: 687 VLFVHAVDGADRVLCASSDAWALSVAVEELALLSGPGKGSVVMRVAEGERLVGAALALGP 746

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
                    +             G+RG  G
Sbjct: 747 SDVITVETEKGKTLEIAASKI-AGQRGTQG 775


>gi|210612463|ref|ZP_03289321.1| hypothetical protein CLONEX_01522 [Clostridium nexile DSM 1787]
 gi|210151571|gb|EEA82578.1| hypothetical protein CLONEX_01522 [Clostridium nexile DSM 1787]
          Length = 744

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 214/762 (28%), Positives = 376/762 (49%), Gaps = 53/762 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MQDSQIIRTEYSDIMKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TEAR+ ++ + + L  +D+  VDF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TEARLAKLTQEVFLADLDKGVVDFAPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ E+ +A  A + N EI+ ++L+++I GPDFPTGGI+V +++ ++  Y  G G  
Sbjct: 181 IPTHNLGEVIDAVKAYMKNSEITTKQLMKHIKGPDFPTGGIVV-NKDDLLNIYETGSGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +  VEE+  G   +V++EIPY +  +   + +  +A L+ +K+   + DI ++S++
Sbjct: 240 KIRGKVEVEELKGGKKRLVISEIPYTMIGAGIGKFLNDVASLVESKKTNDITDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +   +      P+ M L  I++  +  
Sbjct: 300 EGIRIVLELRKDADVENLKNMLYKKTRLEDTFGV-NMLAVANGKPETMGLKSIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------- 419
           + +V  R+    +     + EI +GL+ A   ID II I+R     K             
Sbjct: 359 QFDVATRKYKTLLAKELDKKEIQEGLIKACNVIDLIIEILRGSKSIKEAKACLTDGITEN 418

Query: 420 -------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                            TE Q  AIL +RL  L  LE   +++E +  L    + + +LN
Sbjct: 419 IKFKSNISKKMASMLRFTERQATAILEMRLYKLIGLEIEALQAEYEQTLKSIARYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I  ++  +K+ ++      R+R T  E   A++A  ++  IE++ +  ++  
Sbjct: 479 NYDSMAEVIIEDLDAIKKTYA------RKRRTIVE--NAEEAVFEEKKIEEQEVVFLMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            G+ R++   + + +       +     +    T +I L +  GK + +   ++  G+  
Sbjct: 531 FGYARTVDVSTYERNREAADSENK--YIVSCLNTGKICLFTNAGKMHQVKVPDIPYGKFR 588

Query: 587 GE--AIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKT 640
            +   I  L + N  ++ +  FV D       KLL  + +G    V+ SE     R    
Sbjct: 589 DKGTPIDNLSNYNSTEEQI-VFVCDEGSLSMAKLLFATKQGMLKQVDGSEFQVAKRT-IA 646

Query: 641 FLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGI 697
             K+  E+++  V V   G  + +   N   L F+  ++PE  +G  GVR     K   +
Sbjct: 647 ATKLLEEDEVICVQVVTEGQSIVLQTMNGYFLRFASTEVPEKKKGAVGVRGIKLQKKDEL 706

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
             V   +       +        +        L +R G+G+ 
Sbjct: 707 EQVYLLEEGVEQKVLY-----KEKEVTLNRLKLARRDGIGTK 743


>gi|167758062|ref|ZP_02430189.1| hypothetical protein CLOSCI_00400 [Clostridium scindens ATCC 35704]
 gi|167663959|gb|EDS08089.1| hypothetical protein CLOSCI_00400 [Clostridium scindens ATCC 35704]
          Length = 745

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 209/762 (27%), Positives = 369/762 (48%), Gaps = 51/762 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MQDSQIIRTEYSDVMKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMYELGIRYDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TEAR+ ++  +  L  +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TEARLAKITQDAYLADLDKDIVDFMPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ E+ EA  A + N +IS ++L++YI GPDFPTGGI+V +++ ++  Y  G G  
Sbjct: 181 IPTHNLGEVIEAVKAYMKNDDISTKQLMKYIKGPDFPTGGIVV-NKDELLNIYEAGSGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +  VEE+  G   +V+TEIPY +  +   + +  +  L+ +K+   + DI ++S++
Sbjct: 240 KIRGKVEVEEMKGGKNRLVITEIPYTMIGAGIGKFLNDVCALVESKKTSDIVDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    R  D + L   ++  + +E  F +   +      P+ M L  I++  +  
Sbjct: 300 EGIRIVIELKRGADVENLTNMLYKKTRLEDTFGV-NMLAVANGRPETMGLKKIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------- 419
           + E+  R+    ++    R EI +GL+ A   ID II I+R     K             
Sbjct: 359 QFELATRKYQNLLKKEQDRKEIQEGLIKACDVIDLIIEILRGSQSVKDAKACLTNGVTEN 418

Query: 420 -------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                            TE Q  AIL +RL  L  LE   +  E +  L    + + +LN
Sbjct: 419 IKFKSSISKKMAAMLRFTERQATAILEMRLYKLIGLELEALMKEHEETLKNIARYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I  ++ ++K+ F+      +RRT       A++A  ++  IE++ +  ++  
Sbjct: 479 NYDSMAEVIMADLDKIKKEFA-----RKRRTAV---ENAEEAVYEENKIEEQEVVFLMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            G+ +++ ++  + +       +     L    T ++ + +  GK + +   +L  G+  
Sbjct: 531 FGYAKTVDTNIYERNKEAADAENK--HVLSCMNTGKLCIFTNTGKMHQVKVLDLPYGKFR 588

Query: 587 GE--AIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKT 640
            +   I  + + +  Q+ +  ++ D+      +LL  + +G    VE +E     R    
Sbjct: 589 DKGLPIDNVSNYDSTQENI-VYICDAEQMRYARLLFATKQGMIKKVEGNEFQVAKRT-IA 646

Query: 641 FLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
             K+  E+++  V V      V +  +    L F   ++    +G  GVR    +     
Sbjct: 647 ATKLQPEDELISVQVVTDNQQVVLQTKEGYFLRFPAQEVSGKKKGAIGVRGIKLRKNDEL 706

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           +            +        +        + KR G G+  
Sbjct: 707 EHAYLFEEGTEAKVIFGE----KEVTLNRLKVAKRDGNGTKA 744


>gi|257092304|ref|YP_003165945.1| DNA topoisomerase IV subunit A [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044828|gb|ACV34016.1| DNA topoisomerase IV, A subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 781

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 275/744 (36%), Positives = 424/744 (56%), Gaps = 30/744 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E+  +V L  +    YL YA++ +K RA+PD++DG KPV RR++ AM E+GL   A   K
Sbjct: 31  EDDDSVLLHDSAARDYLEYAIAVVKGRALPDVKDGLKPVQRRVLFAMRELGLSATAKPVK 90

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD S YD++VR+AQPF+ RYPL+ GQGNFG+ DGD+AAA RYTEA
Sbjct: 91  SARVVGDVIGKYHPHGDTSAYDAMVRVAQPFMLRYPLVDGQGNFGSRDGDNAAAMRYTEA 150

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +AEL+L  + E  VDF+  Y+    EP   P++ P LL NG SGIAVGMAT IPSH
Sbjct: 151 RLTAIAELLLGELGEGTVDFQPNYDGSFDEPAFLPARLPFLLLNGASGIAVGMATEIPSH 210

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  AA+  I++P   +++L+E+I GPD+P GG I+ S   I  +Y  GRG  RVRA
Sbjct: 211 NLREVAAAAIHKIEHPAAGLDELMEHIPGPDYPGGGQIISSAADIAAAYASGRGSLRVRA 270

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL----------------- 297
           R+  EE+ RG+W +V  E+P  V  ++++ +I  L+  +  P                  
Sbjct: 271 RYEFEEMARGAWQLVFRELPPGVSSAKVLSEIGALLNPQPRPGKKAIEQSAAQLKTLMAS 330

Query: 298 -LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
            L+  RDES   +DVR+V  P +  +D +  +  +   + +ET  P+N+  + +   P  
Sbjct: 331 QLDRARDESGKDDDVRLVFEPSSSRIDRNEFVALLLAHTSLETSAPINLVAVGIDGRPCQ 390

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  ++ EW   R   + RR+ FR+Q  D R+ IL+G  I +LNIDE+I IIR  D PK
Sbjct: 391 KSLTDLIGEWCTFRIRTVHRRTEFRLQKADDRIHILEGRHIVFLNIDEVIRIIRESDDPK 450

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             +++RF+L++ Q + IL +RLR L +LE  +I+ ELD L  E+E +  LL S      Q
Sbjct: 451 AALIARFTLSDRQAEDILEIRLRQLARLEGIRIEQELDKLRGEREGLLKLLGSDALLRRQ 510

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           +  EI+   E    +     RRT     + A ++  + A +  EP+TV+IS +GW R  +
Sbjct: 511 VIREIKADAEKHGDA-----RRTIILAATTASRS--EVAAVADEPVTVIISEKGWARVRQ 563

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H +DLS + FK+GD    A    + D ++++S++G+A+T+   +L  GRG G  +   +
Sbjct: 564 GHGLDLSGVVFKDGDRAGSAQECRSVDSLVIISSEGRAFTVAIASLPDGRGMGAPLSSFV 623

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           DL     I       +  +LL   + G  FI    ++++  + GK FL V     +   +
Sbjct: 624 DLGGG-KIAHVLTGRADDELLFAKTSGYGFICTYGDLLSRQKAGKAFLSVEEGAGILPPL 682

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
           ++ G DH+A + E+ +LL+F + Q+  ++ GKGV++   +D      +       +T   
Sbjct: 683 RIAGKDHLAALSEDGRLLVFPLAQMKRLASGKGVQIIGLRDAETLRAVLAVQGSRVTIK- 741

Query: 714 SAGRSYNRSENDLLGWLGKRGGVG 737
              R+  ++       L +R   G
Sbjct: 742 GTARNRIKTLVSEDRHLAQRARRG 765


>gi|229829025|ref|ZP_04455094.1| hypothetical protein GCWU000342_01110 [Shuttleworthia satelles DSM
           14600]
 gi|229792188|gb|EEP28302.1| hypothetical protein GCWU000342_01110 [Shuttleworthia satelles DSM
           14600]
          Length = 747

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 206/763 (26%), Positives = 372/763 (48%), Gaps = 51/763 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
              + E +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ + 
Sbjct: 2   TEKIREQIIETEYSDVMQKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++KSARIVG+ +GK HPHGD S+YD+LV ++Q F +  PL+ G GNFG+I+GD AAA 
Sbjct: 62  KPYRKSARIVGDTMGKYHPHGDASIYDALVVMSQDFKKSVPLVDGHGNFGSIEGDGAAAM 121

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTEAR++Q+A+   L  +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMA
Sbjct: 122 RYTEARLSQIAQEAYLADLDKDLVDFIPNFDETEKEPEVLPVRIPNLLVNGADGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HN+ E+ +  +A + NPEI+  +++EYI GPDFPTGGI+  +R+ ++  Y  G G
Sbjct: 182 TSIPQHNLGEVIDGVIAYMKNPEINTRQMMEYIPGPDFPTGGIVT-NRDELLAIYSTGAG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDES 305
             ++R +  +E++  G   IVV+EIPY +      + +     L+ +K+   + DI + S
Sbjct: 241 KIKIRGKASIEKIKGGREAIVVSEIPYTMIGANIGKFLNDTYALVESKKTSDIVDISNMS 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           ++D   ++    R  D   ++  ++  + +E  F +   +      P+ M +  I++  +
Sbjct: 301 SKDGIRIVIELKRGADAQNVLNLLYRKTRLEDTFGV-NMLAVAEGKPETMGIVPIIRHHV 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-------------- 411
             + E+  R+ +  ++    + EI +GL+ A   ID II I+R                 
Sbjct: 360 NFQYELATRKYTNLLKKEKEKKEIQEGLIKAVDVIDLIIEILRGSRSVKMARACLVDGIT 419

Query: 412 -------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                  +           T+ Q DAIL +R+  L  LE  Q++++ +  +   ++   +
Sbjct: 420 EGIRFKSEQSEKDARLLHFTQRQADAILQMRMYRLIGLEIEQLRADYEKTMQNIQEDMDI 479

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L         I  +++E+K+ F+      +RRT    V+ A    +++  IE++ + V++
Sbjct: 480 LEHRASMARVIIRDLKEIKKTFA-----RKRRTLIDNVAEA---VIEEKPIEEQEMVVLM 531

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
              G+++++     D +     + +     +H    DR+ + S+ G+ + +   ++  G+
Sbjct: 532 DRFGYVKAIDLSVYDRNQEAADKENK--YVIHCSNLDRLAVFSSTGQLHLIKVLDMPGGK 589

Query: 585 GHGE--AIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
              +   I  L   +  ++      A       K+   +  G    V+ +E   +     
Sbjct: 590 FRDKGTPIDNLSKFDSARERILFAEALGAVKESKVFFGTRAGYIKQVDGAEFDVSRYSS- 648

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGG 696
              K+   +++  V  + G + + +  ++   L   +  IPE  +   GV      +   
Sbjct: 649 IASKLGQGDELVAVGTIRGAETLVMETKSGYFLRIPVSDIPEKKKAAVGVIGIKLGRADR 708

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           +S +      EG          +N+        +G R   G  
Sbjct: 709 VSQMYLLTDQEGGLTSL-----HNKKVVLNRLHIGSRATKGVK 746


>gi|15828844|ref|NP_326204.1| DNA topoisomerase IV subunit A [Mycoplasma pulmonis UAB CTIP]
 gi|14089787|emb|CAC13546.1| TOPOISOMERASE IV SUBUNIT A [Mycoplasma pulmonis]
          Length = 939

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 201/754 (26%), Positives = 381/754 (50%), Gaps = 31/754 (4%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++  N+L +E +     + SL   + +R+  Y+   I++RA+PD RDG KPV RRI+++M
Sbjct: 1   MNKKNSLEQEQINEKLISQSLDQIMSDRFGRYSKYIIQQRALPDARDGLKPVQRRILYSM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            ++ L     FKKSARIVG+VIGK HPHGD S+Y+++VR+AQ +    PLI   GN G+I
Sbjct: 61  MDLKLWNDKPFKKSARIVGDVIGKYHPHGDSSIYEAMVRMAQDWKMNIPLIQMHGNIGSI 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           D D AAA RYTE+R+ +++ L+L+G++++ V F   +++ + EP V P+  PNLL NG  
Sbjct: 121 DDDPAAAMRYTESRLAEISNLMLEGIEKNVVSFAPNFDDSEKEPTVLPALIPNLLLNGAR 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIA G AT +P HN+ EI +AA+A I    + +E L++YI GPDFPTGG ++     IV+
Sbjct: 181 GIAAGFATEMPPHNLGEILDAAIAKIRISSLKVEDLIKYIKGPDFPTGG-VIHGLSGIVQ 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +++ GRG   +  ++    +      I++T+IPY   KS+++  I E+I+ ++I  ++++
Sbjct: 240 AFKEGRGRISLTCKYEHINL-PDKNEILITQIPYGSVKSKIVRDIDEIIVNQKIDGIKEV 298

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            D+S  D   +     +  + + +M+ +F  ++++  +    N+      P ++ L+ +L
Sbjct: 299 LDQSDRDGISIAIKLEKKANHESIMKYLFSKTELQVFYNY-NNIAIKNGSPTLLNLNELL 357

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----PKPVM 417
             ++ H + +  +   F +     R+E+++G L      D+IIA IR  +         +
Sbjct: 358 DIYIEHLKTINVKILEFDLNKARLRLEVVEGFLRVAQITDQIIATIRASNDGKKGVIEDL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  F+ ++ Q  AI  LRL  L + + Y  ++E + L+ +    + +LNS  +    +  
Sbjct: 418 IRIFAFSQRQATAIAELRLYRLSQTDFYLYQNEKEELIKQINDFEKILNSDNELKTYLVN 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
            ++++K+ +        R+T   +        +++  +  E   V +S  G+++ + S +
Sbjct: 478 ILKKIKKTYPTP-----RKTQIIDEELKRNYDIEEL-VVDEKCYVSLSQDGYLKRVSSKT 531

Query: 538 V---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
               D ++   KE D+L     A T D++L+ S  G    +P   +     +  G  I  
Sbjct: 532 FKTNDFASFGLKENDNLSFLSKATTKDKLLIFSDHGNYAIIPIYKIEEQKSKSFGVHIND 591

Query: 593 LIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSE 647
            +  N  + I+   V +       + +V+ KG    V  ++ +  TR+ K    + +  +
Sbjct: 592 FVYFNSYEKIIYVLVVNEFSQDYYISLVTQKGLGKRVSLNKFL-ITRQSKISNAITLKDD 650

Query: 648 EKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKI 705
           +++  V    G   + +      ++ FS D +P +S +G+G ++    +G     +    
Sbjct: 651 DRLVDVRVSKGKQNIILFTNFNNVVKFSEDALPVISTKGQGNKMIQLSEGEKVSAMSITK 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                 + +   +  +           R   G  
Sbjct: 711 TTDNLILITNKNNLIK-VPTSHFKFTPRAAKGKR 743


>gi|171920470|ref|ZP_02931772.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902927|gb|EDT49216.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 850

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 218/766 (28%), Positives = 388/766 (50%), Gaps = 31/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++     + +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G
Sbjct: 1   MSDN----HQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           + +   +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+
Sbjct: 57  IFYDKPYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDN 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA 
Sbjct: 117 AAAMRYTEARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIAS 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT+IP HN  E+ +A +  ID+P+ S+EKL+E    PDFPTGG I         +++ 
Sbjct: 177 GYATNIPPHNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGEI-HDLNGCANAHKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G G F +RA    +        I+++ IPY+  K+ +I++I ++I  K +  L ++RDES
Sbjct: 236 GEGKFIIRACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    + ++ + +   ++  +++E  +      +   R P ++ L   L   +
Sbjct: 296 DAKGISIIIDTKKDINLENVKNYLYKKTNLEISYNTKFIAIVH-RTPTLVNLSTYLDAQI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            H  +V+ +   + +  I  R+EI++GL+     IDEII IIR        K  ++  F+
Sbjct: 355 NHSLDVINKVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQVFN 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T NQ +AI+ +RL +L + + + +K+E   L  E + +   +NS + + N +  ++ E 
Sbjct: 415 FTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQERINSLQVRKNYLKQKMIEF 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ F         R T            +  MIEK+ + +VIS  G+I+++   S + S 
Sbjct: 475 KKTFG------FERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYIKTVSKKSFESSK 528

Query: 543 LHF---KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLN 597
                 K  D L      ++ D+IL++++  K   L A  + S R     E +   +  +
Sbjct: 529 YDELGLKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFD 588

Query: 598 HNQDIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMK 651
            N+ ++  ++++        +L++ S       +E SE+ I    K  + +K++  + + 
Sbjct: 589 ANEKVIAVYIWNEQFKIDEYQLVLASRLNLIKRIELSELDINKNSKQISIMKLNDNDNLI 648

Query: 652 LVVKVTGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
               +   H   +  + +    L+F + +I  ++R  KG+++   K       I      
Sbjct: 649 SANLIKKGHNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAILITPNN 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G        R  ++  N     L KR    + +     +    L++
Sbjct: 709 GYNVQLFLERG-SKCFNISELKLSKRATTPTNLYPITKKVQNVLAA 753


>gi|186701721|ref|ZP_02971413.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186700988|gb|EDU19270.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 850

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 218/766 (28%), Positives = 388/766 (50%), Gaps = 31/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++     + +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G
Sbjct: 1   MSDN----HQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           + +   +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+
Sbjct: 57  IFYDKPYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDN 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA 
Sbjct: 117 AAAMRYTEARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIAS 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT+IP HN  E+ +A +  ID+P+ S+EKL+E    PDFPTGG I         +++ 
Sbjct: 177 GYATNIPPHNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGEI-HDLNGCANAHKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G G F +RA    +        I+++ IPY+  K+ +I++I ++I  K +  L ++RDES
Sbjct: 236 GEGKFIIRACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    + ++ + +   ++  +++E  +      +   R P ++ L   L   +
Sbjct: 296 DAKGISIIIDTKKDINLENVKNYLYKKTNLEISYNTKFIAIVH-RTPTLVNLSTYLDAQI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            H  +V+ +   + +  I  R+EI++GL+     IDEII IIR        K  ++  F+
Sbjct: 355 NHSLDVINKVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQVFN 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T NQ +AI+ +RL +L + + + +K+E   L  E + +   +NS + + N +  ++ E 
Sbjct: 415 FTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQERINSLQVRKNYLKQKMIEF 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ F         R T            +  MIEK+ + +VIS  G+I+++   S + S 
Sbjct: 475 KKTFG------FERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYIKTVSKKSFESSK 528

Query: 543 LHF---KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLN 597
                 K  D L      ++ D+IL++++  K   L A  + S R     E +   +  +
Sbjct: 529 YDELGLKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFD 588

Query: 598 HNQDIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMK 651
            N+ ++  ++++        +L++ S       +E SE+ I    K  + +K++  + + 
Sbjct: 589 ANEKVIAVYIWNEQFKIDEYQLVLASRLNLIKRIELSELDINKNSKQISIMKLNDNDNLI 648

Query: 652 LVVKVTGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
               +   H   +  + +    L+F + +I  ++R  KG+++   K       I      
Sbjct: 649 SANLIKKGHNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAILITPNN 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G        R  ++  N     L KR    + +     +    L++
Sbjct: 709 GYNVQLFLERG-SKCFNISELKLSKRAATPTNLYPITKKVQNVLAA 753


>gi|183508622|ref|ZP_02958127.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|182676081|gb|EDT87986.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
          Length = 850

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 218/766 (28%), Positives = 388/766 (50%), Gaps = 31/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++     + +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G
Sbjct: 1   MSDN----HQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           + +   +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+
Sbjct: 57  IFYDKPYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDN 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA 
Sbjct: 117 AAAMRYTEARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIAS 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT+IP HN  E+ +A +  ID+P+ S+EKL+E    PDFPTGG I         +++ 
Sbjct: 177 GYATNIPPHNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGEI-HDLNGCANAHKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G G F +RA    +        I+++ IPY+  K+ +I++I ++I  K +  L ++RDES
Sbjct: 236 GEGKFIIRACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    + ++ + +   ++  +++E  +      +   R P ++ L   L   +
Sbjct: 296 DAKGISIIIDTKKDINLENVKNYLYKKTNLEISYNTKFIAIVH-RTPTLVNLSTYLDAQI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            H  +V+ +   + +  I  R+EI++GL+     IDEII IIR        K  ++  F+
Sbjct: 355 NHSLDVINKVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQVFN 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T NQ +AI+ +RL +L + + + +K+E   L  E + +   +NS + + N +  ++ E 
Sbjct: 415 FTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQKRINSLQVRKNYLKQKMIEF 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ F         R T            +  MIEK+ + +VIS  G+I+++   S + S 
Sbjct: 475 KKTFG------FERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYIKTVSKKSFESSK 528

Query: 543 LHF---KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLN 597
                 K  D L      ++ D+IL++++  K   L A  + S R     E +   +  +
Sbjct: 529 YDELGLKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFD 588

Query: 598 HNQDIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMK 651
            N+ ++  ++++        +L++ S       +E SE+ I    K  + +K++  + + 
Sbjct: 589 ANEKVIAVYIWNEQFKIDEYQLVLASRLNLIKRIELSELDINKNSKQISIMKLNDNDNLI 648

Query: 652 LVVKVTGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
               +   H   +  + +    L+F + +I  ++R  KG+++   K       I      
Sbjct: 649 SANLIKKGHNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAILITPNN 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G        R  ++  N     L KR    + +     +    L++
Sbjct: 709 GYNVQLFLERG-SKCFNISELKLSKRAATPTNLYPITKKVQNVLAA 753


>gi|302386254|ref|YP_003822076.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
 gi|302196882|gb|ADL04453.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
          Length = 755

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 226/762 (29%), Positives = 375/762 (49%), Gaps = 54/762 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L+     
Sbjct: 12  MSEKIIKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPH 71

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYT
Sbjct: 72  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQIFKKGMPLVNGHGNFGSIEGDGAAAMRYT 131

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ + AE + L+ +D+  VDF   Y+E + EP V P + PNLL NG  GIAVGM+TSI
Sbjct: 132 EARLEKFAEEVYLRDLDK-TVDFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSI 190

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           PSHN+ E+ +A  A IDNP+ISI KL+EY+ GPDFPTGGII  ++  +   Y  G G  +
Sbjct: 191 PSHNLGEVIDAVQAYIDNPDISICKLMEYLPGPDFPTGGIIA-NKSDLPSIYETGAGKIK 249

Query: 252 VRARWCVE--EVGRGSWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +  VE  +       +V+TEIPY +     ++ +  +A+L+ +K++  + DI ++S 
Sbjct: 250 LRGKIEVELGKRKADKDKLVITEIPYTMVGSGINKFLVDVADLVESKKLSDVVDISNQSN 309

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    +  D + +   ++  + +E  + +NM  ++    P+ + L GILK +L 
Sbjct: 310 KEGIRIVLELRKDADVEKIRNILYKKTKLEDTYGVNMLAIAD-GRPETLNLKGILKNYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF----- 421
            + +   R+    ++    + EI +GL+ A   ID IIA++R     K            
Sbjct: 369 FQYKNATRKYQTLLEKELEKKEIKEGLIKACDIIDMIIAVLRGSKNLKDAKNCLMTGDIS 428

Query: 422 ----------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                             TE Q  AIL +RL  L  LE  Q++ E    LA+  + + +L
Sbjct: 429 NINFKVKGFEEDAKTLHFTEKQATAILEMRLYKLIGLEILQLEKEYKETLAKIAEYEKIL 488

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           ++ K     I  ++ ++K+ ++       RRT   +   A      +  I    +T V+ 
Sbjct: 489 SNRKFMDKVIKDDLDQIKKEYATP-----RRTLIEDGKEA---VYDETAIPVSEVTFVMD 540

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
             G+ + L   + D               ++   TD+I + +  G  + + A ++  G+ 
Sbjct: 541 RFGYCKILDKATYDR--NKETIETENPYVVNCLNTDKICIFTNTGNLHQVKAQDIPGGKL 598

Query: 586 HGE--AIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             +   I  L   +  ++ +    +       K L  + +    +V   E   N R    
Sbjct: 599 RDKGTPIDNLSKFDGTREEIVYLCHAEGLKGRKFLFATKQALVKLVPGEEFETNNRT-VA 657

Query: 641 FLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K+  ++ +  V  V G   V +   +   L F  ++IPEM +  +GVR      G   
Sbjct: 658 ATKLPDDDMLLRVQLVNGQTDVVLQTSSGVFLRFLTEEIPEMKKNARGVRGIKLTQGEAL 717

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           + +   I E             +  +     +GKR G GS V
Sbjct: 718 EAVHL-IGEDPVI-----YYKEKEVHLNRLKIGKRDGKGSKV 753


>gi|13358030|ref|NP_078304.1| topoisomerase IV subunit A [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170761865|ref|YP_001752552.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|11270990|pir||H82886 topoisomerase IV subunit A UU467 [imported] - Ureaplasma
           urealyticum
 gi|6899461|gb|AAF30879.1|AE002143_4 topoisomerase IV subunit A [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827442|gb|ACA32704.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
          Length = 850

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 217/761 (28%), Positives = 386/761 (50%), Gaps = 27/761 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++  + +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+ +  
Sbjct: 2   SVNHQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G AT+
Sbjct: 122 YTEARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ S+EKL+E    PDFPTGG I         +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGEI-HDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I+++ IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 IIRACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  +++E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDINLENVKNYLYKKTNLEISYNTKFIAIVH-RTPTLVNLSTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ +   + +  I  R+EI++GL+     IDEII IIR        K  ++  F+ T NQ
Sbjct: 360 VINKVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQVFNFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +K+E   L  E + +   +NS + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQERINSLQVRKNYLKQKMIEFKKTFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-- 545
                   R T            +  MIEK+ + +VIS  G+I+++   S + S      
Sbjct: 480 ------FERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 546 -KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDI 602
            K  D L      ++ D+IL++++  K   L A  + S R     E +   +  + N+ +
Sbjct: 534 LKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFDANEKV 593

Query: 603 VTAFVYDS-----TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           +  ++++        +L++ S       +E SE+ I    K  + +K++  + +     +
Sbjct: 594 IAVYIWNEQFKIDEYQLVLASRLNLIKRIELSELDINKNSKQISIMKLNDNDNLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              H   +  + +    L+F + +I  ++R  KG+++   K       I      G    
Sbjct: 654 KKGHNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAILITPNNGYNVQ 713

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               R  ++  N     L KR    + +     +    L++
Sbjct: 714 LFLERG-SKCFNISELKLSKRAATPTNLYPITKKVQNVLAA 753


>gi|326773486|ref|ZP_08232769.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
 gi|326636716|gb|EGE37619.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
          Length = 847

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 227/810 (28%), Positives = 369/810 (45%), Gaps = 61/810 (7%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     + +    +  +  + L   +   +L YA S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MPKSATTRTPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  MGL       KS+R+VG+V+G+LHPHGD ++Y++LVRLAQPF  R PLI G GNFG+
Sbjct: 61  MDRMGLRPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +   +DED VDF   Y+   +EP V P+ FPNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALALTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT++P HN+ E+  AA  L+ +PE ++E+L+ ++ GPD P GG+IV   + I 
Sbjct: 180 AGIAVGMATNMPPHNLVEVVAAARHLLTHPEATLEELMAFVPGPDLPAGGMIV-GLDGIR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG F  RA   VE V      IVVTE+PY V   ++I +I E + +K++  + D
Sbjct: 239 EAYRTGRGKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKVIARIKEAVGSKKLQGITD 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +       ++       +P+ ++  ++  + +E  F +N   L     P  + L  
Sbjct: 299 VADLTDRKHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVD-GQPHTLGLRE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ ++ HR  V+ RR+ FR+     R  ++ GLLIA L+IDE+IA+IR+ D     +  
Sbjct: 358 LLEVFVRHRLTVVTRRTRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F LTE Q   IL L+LR L K    +++ E D L  E E ++++L         ++
Sbjct: 418 LMQVFDLTEPQAGYILELQLRRLTKFSVIELEKERDELAREIEALEAILADDVLLRRVVS 477

Query: 477 CEIREVKEIFSKSTDL------GRRRTTFC-----------------------EVSRADK 507
            E+  V E F            G R T+                          ++    
Sbjct: 478 RELAAVAEQFGTPRRTVLLEASGERVTSSAAAETADDASASGRGAKRAGGAAQPMTLMPS 537

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           A+     +  +P  V++S  G +               +  D+L   +      RI  ++
Sbjct: 538 ASPVPLTVPDDPCRVLLSATGLVARTAGTEPVARTGGRQPHDALTSQVATTARGRIGAVT 597

Query: 568 TDGKAYTLPAGNLLSGRGHGEA--------IQLLIDLNHNQDIVTAFVY--DSTCKLLVV 617
             G+   L   +         A        ++ L+D+   + +V            +++ 
Sbjct: 598 DTGRLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEPEEKVVGLVPVGSADNPPIVLA 657

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSID 676
           +++G    V+  +      +    + +S  +++         D +A+V  + +LL F   
Sbjct: 658 TAEGVIKRVKPGD-EPRNAESWEVISLSEGDRVVFADTAADTDFLALVTSDAQLLRFQAA 716

Query: 677 QIPEMSRGK-GVRLQSYKDGGISDVICFKICE---GLTWIDS---------AGRSYNRSE 723
           ++    RG  G+   S  +G           E       +            G S  +  
Sbjct: 717 KVRPQGRGAGGMAGISLHEGARVIAGAAVPEELLAEAVVVTVAGSEGSLPGTGGSSVKVT 776

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    R   G    +      + + +
Sbjct: 777 PLDRYPAKGRATGGVRSHRFLRGEDELMVA 806


>gi|168699792|ref|ZP_02732069.1| DNA gyrase subunit A [Gemmata obscuriglobus UQM 2246]
          Length = 779

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 239/757 (31%), Positives = 381/757 (50%), Gaps = 37/757 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS-EMGLDFGAA 71
           + E ++ V++   +  R+L YA+S +K RA+PD+RDG KPV RRI++AM  ++ L     
Sbjct: 1   MAETIETVTIADEVRTRFLTYAMSVVKGRALPDVRDGLKPVQRRILYAMFQDLKLTVDKK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             K A+IVGEV+G  HPHGD ++Y++LVR++Q +V R PL+ GQGNFG++DGD  AAYRY
Sbjct: 61  ALKCAKIVGEVMGNYHPHGDSALYEALVRMSQNWVLRVPLVYGQGNFGSVDGDPPAAYRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA++T+ AEL+L  + +D VD   +Y+    EP V P++FPNLL NGT+GIAVGMAT I
Sbjct: 121 TEAKLTRQAELLLDELGQDTVDSVASYDGTRHEPAVLPAQFPNLLVNGTAGIAVGMATQI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A   LIDNP+ ++  LL+ I GPDFP GG I+  R ++ + Y  G G  +
Sbjct: 181 PPHNLGEVLKACTLLIDNPDATVANLLDKIKGPDFPLGGKILADRAALRKIYEEGVGSIK 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVR 310
           V+A W  E++ RG   IVVT IPY V K  L   I  +I  +++P L    +ES E D  
Sbjct: 241 VQAEWKEEKIDRGV-QIVVTSIPYGVNKGDLENTIGSIIDQRKLPQLTGQSNESNEKDGL 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-----MGRVPQ-VMPLDGILKEW 364
            ++       DP+L+M  ++  ++++  +  NM  L       G  P+  + L  +L E+
Sbjct: 300 RLVLEIKNGTDPNLVMAYLYKHTELQKTYSYNMTALVPAEDGKGMKPRDRLSLWDLLTEF 359

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF 421
           L  R   + RR  ++++ + RR+ IL+G  I +  +D  I +IR           + + F
Sbjct: 360 LKFRLATVRRRFEYQLRQLRRRIHILEGFQIIFNALDRAIKMIRESSGKPDAAEKLKAAF 419

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L + QV AIL+ +L  + +LE  +I  EL     + ++I+++L S K+ W  I  E+  
Sbjct: 420 KLDDEQVGAILDSQLYKIAQLEIQKIIDELTEKKKQAKEIETILASEKKLWGVIKSELEA 479

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           + E F        RR T            ++A I +E   VV++  G I+ +      + 
Sbjct: 480 LIEKF------PERRKTRMASDEDVLEFNEEAYIARENTNVVLTKNGRIKRV-GRLASVE 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
               +EGD++   +   T D +   + DG AYT+    + +  G+GE I     L     
Sbjct: 533 TTRVEEGDAVAAVVPGSTLDHVSFFADDGAAYTMRINEVPATAGYGEPITKFFKLADGAK 592

Query: 602 IVTAFVYDS---------------TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVS 645
           +V A   D                   L+V +  G    +  +   + +T+ G+ F+K+ 
Sbjct: 593 VVAAVTTDPRFTPADLPAKGDTPGGPFLVVATRNGFVLRLPLTAFRSESTKVGRRFVKLE 652

Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICF 703
             +K+ +V     +  V +      +  F +DQ+  +   GKGV     +          
Sbjct: 653 EGDKVVMVRLAGAEEGVMLATSGGYVTHFPLDQVSILSGAGKGVIGIELESKDDCLGGVL 712

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                   +        +          KRG  G   
Sbjct: 713 VGGRFDKLVVETENGKTQDFGPGAVKTRKRGAKGEKP 749


>gi|320531395|ref|ZP_08032363.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136396|gb|EFW28376.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 849

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 227/812 (27%), Positives = 369/812 (45%), Gaps = 63/812 (7%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     + +    +  +  + L   +   +L YA S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MPKSATTRTPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  MGL       KS+R+VG+V+G+LHPHGD ++Y++LVRLAQPF  R PLI G GNFG+
Sbjct: 61  MDRMGLRPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +   +DE+ VDF   Y+   +EP V P+ FPNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALALTADLDENTVDFAPNYDYTLTEPEVLPAAFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT++P HN+ E+  AA  L+ +PE S+E L+ ++ GPD P GG+IV   + I 
Sbjct: 180 AGIAVGMATNMPPHNLVEVVAAARHLLTHPEASLEDLMAFVPGPDLPAGGMIV-GLDGIR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG F  RA   VE V      IVVTE+PY V   ++I +I E + +K++  + D
Sbjct: 239 EAYRTGRGKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKIITRIKEAVGSKKLQGITD 298

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +       ++       +P+ ++  ++  + +E  F +N   L     P  + L  
Sbjct: 299 VADLTDRRHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVD-GQPHTLGLRE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L  ++ HR  V+ RR+ FR+     R  ++ GLLIA L+IDE+IA+IR+ D     +  
Sbjct: 358 LLDVFVRHRLTVVTRRTRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F LTE Q   IL L+LR L K    +++ E D L  E E ++++L         ++
Sbjct: 418 LMQVFDLTEPQAGYILELQLRRLTKFSVIELEKERDELAREIEALEAILADDVLLRRVVS 477

Query: 477 CEIREVKEIFSKSTDL-----------------------------GRRRT--TFCEVSRA 505
            E+ +V E F                                   G +RT  +   ++  
Sbjct: 478 RELADVAEQFGTPRRTVLLEASGEPVTSSAGSAATPDDASTASGGGEKRTGASAQPMTLM 537

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
             A+     +  +P  VV+S  G +  +            +  D+L   + A    RI  
Sbjct: 538 PSASPVPLTVPDDPCRVVLSATGLVARIPGAEPVARTGRRQPHDALTSQVSATARGRIGA 597

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEA--------IQLLIDLNHNQDIVTAFVY--DSTCKLL 615
           ++  G+   L   +         A        ++ L+D+   + +V            ++
Sbjct: 598 VTDTGRLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEPEEKVVGLVPVGSADNPPIV 657

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFS 674
           + +++G    V+  +      +    + +S  +++         D + +V  + +LL F 
Sbjct: 658 LATAEGVIKRVKPGD-EPRNAESWEVISLSEGDRVVFAGTAADTDFLTMVTSDAQLLRFQ 716

Query: 675 IDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE---GLTWIDS---------AGRSYNR 721
             ++    RG  G+   S  +G           E       +            G    +
Sbjct: 717 AAKVRPQGRGAGGMAGISLHEGARVIAGAAVPEELLAEAVVVTVTGSEGSLPGTGGGSVK 776

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      R   G    +      + + +
Sbjct: 777 VTPLDRYPAKGRATGGVRSHRFLRGEDELMVA 808


>gi|89901417|ref|YP_523888.1| DNA topoisomerase IV subunit A [Rhodoferax ferrireducens T118]
 gi|89346154|gb|ABD70357.1| DNA topoisomerase IV subunit A [Rhodoferax ferrireducens T118]
          Length = 796

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 280/780 (35%), Positives = 412/780 (52%), Gaps = 69/780 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA-------F 72
           ++L    +  YL YALS +K RA+PD+ DG KPV RRI+++MS MGL FG          
Sbjct: 24  LNLATYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMSRMGLGFGGPNGNTGAKP 83

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+V+G+ HPHGD SVYD+ VR+AQ F QRYPLI G GNFG+ DGD AAA RYT
Sbjct: 84  VKSARIVGDVLGRFHPHGDSSVYDAAVRMAQDFSQRYPLIDGHGNFGSRDGDGAAAMRYT 143

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ ++  L+L  +DE  VDF   Y+    EP   P++ P  L NG SGIAVG+AT IP
Sbjct: 144 EARLAKITGLLLDEIDEGTVDFMPNYDGSTQEPSQLPARLPFNLLNGASGIAVGLATEIP 203

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN++E+ +A +ALI +P++S   L   I GPD+P GG I+ S E I E+YR GRG  + 
Sbjct: 204 SHNLREVADACIALIKSPQLSESDLFALIPGPDYPGGGQIISSAEDIAEAYRSGRGSLKC 263

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL--------------- 297
           RARW +E++ RG W +V+TE+P  V   R++E+I EL   K                   
Sbjct: 264 RARWKIEDLARGQWRLVLTELPPGVSTQRVLEEIEELSNPKVKAGKKALSLEQNQLKATL 323

Query: 298 ---LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
              L+ +RDES     VR+V  PK   +    L+ ++   + +ET  P+N+ ++ +   P
Sbjct: 324 LSVLDGVRDESSKDAAVRLVCEPKTSRISQQELITTLLAHTSLETSSPINLTMIGLDGRP 383

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
               L  +L EW+A R++ + RRS  R+  +  R+ IL+G  +  LNIDE+IAIIR  D+
Sbjct: 384 TQKSLRQMLTEWIAFRQKTIERRSQHRLGKVLDRIHILEGRALVLLNIDEVIAIIRQADE 443

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           PK  +++RF L++ Q + IL +RLR L +LE  +I+ EL  L  E++K++ +L S     
Sbjct: 444 PKAALIARFHLSDRQAEDILEIRLRQLARLEAIKIEQELAGLRGEQQKLEEILGSPSALR 503

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +  EI    + F+       RRT      +A+K  + +  +  EP+TVV+S +GW+R+
Sbjct: 504 RLMIKEIEADAKTFADP-----RRTLI----QAEKKAVLEVKVVDEPVTVVVSQKGWVRA 554

Query: 533 LKSH-------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            K          V  +   FK GD+L       T D +L   ++G+ Y++    L   RG
Sbjct: 555 QKGWASERAANGVLPAEYSFKAGDALYDTFECRTVDTLLAFGSNGRVYSVAVALLPGARG 614

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G+ +  L++L     ++  F   +   LL+ SS G  F+     + +  + GK F+  +
Sbjct: 615 DGQPMTSLLELEAGTQLLYYFAGPAPATLLLSSSGGYGFLASVENMTSRLKAGKAFVTCN 674

Query: 646 SEEKMKLVVKVTG----------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
           + E +     V G           HVA      ++L F I Q+  M+  G+G+ L   +D
Sbjct: 675 AGEILCRPSPVAGGSGATPWPAATHVACASAGGRILTFEISQLKTMATGGRGLMLIDLED 734

Query: 695 GGISDVICF----KICEGLTWIDSAGRSYNRSENDLLGWLGK-----RGGVGSLVPKGFP 745
                  C        EGL      GR     +  L           RG  G +   GF 
Sbjct: 735 KDRLAGACAYTRSVKIEGL------GRGGKPRDETLEIRSLNNARALRGRKGKVADLGFK 788


>gi|225572726|ref|ZP_03781481.1| hypothetical protein RUMHYD_00915 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039899|gb|EEG50145.1| hypothetical protein RUMHYD_00915 [Blautia hydrogenotrophica DSM
           10507]
          Length = 748

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 206/758 (27%), Positives = 358/758 (47%), Gaps = 49/758 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 5   NDQIIRTDYAEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+Y++LV +AQ F +   L+ G GNFG+I+GD AAA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGQTLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 134 ARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ + + L  +D++ VDF   ++E + EP V P K PNLL NG  GIAVGMATSIP
Sbjct: 125 ARLQKLTQEVYLADLDKNVVDFIPNFDETEKEPEVLPVKIPNLLVNGADGIAVGMATSIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +   A + N +I+ + L+ YI GPDFPTGGI+V +++ + + Y  G G  R+
Sbjct: 185 PHNLGEVIDGVKAYMKNNDITTKGLMRYIKGPDFPTGGIVV-NQDELRKIYETGSGKIRL 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +  +E+   G   +V+TEIPY +      + +  +A L+ +K+   + DI ++S+++ 
Sbjct: 244 RGKVEIEKAKGGRLHLVITEIPYTMIGANIGKFLNDVATLVESKKTTDILDISNQSSKEG 303

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  D D L+  ++  + +E  F +   +      P+ + L  +++  +  + 
Sbjct: 304 IRIVLELRRDTDVDNLVNMLYKKTRLEDTFGV-NMLAVADGRPETLSLKQVVEHHVEFQF 362

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------- 419
           E+  R+    +     + E+ +GL+ A   ID II I+R     + V             
Sbjct: 363 EIANRKYRTLLDKELEKKEVQEGLMKAVDVIDLIIEILRGSKNQQQVKKCLTTGETEGIR 422

Query: 420 -----------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                      +   TE Q  AIL +RL  L  LE   +  E +  L    K + LLN+ 
Sbjct: 423 FKSKASQKAAAQLRFTERQATAILEMRLYRLIGLEMEALLKEHEATLEHIAKYEDLLNNY 482

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  E+  VK+ F       +RRT       A +A  ++  IE+  +  ++   G
Sbjct: 483 DSMAQAIMNELDAVKKEFG-----RKRRTAL---ENAQEAVFEEKKIEEMEVWFLMDRFG 534

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +++++   + + +  +               TDRI + +  G+ + +   ++   +   +
Sbjct: 535 YVKTIDRQTYERNKENACSESKYLF--SCMNTDRICIFTDAGRMHAVKVLDIPLVKFRDK 592

Query: 589 --AIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              +  L + N  ++ +         K   LL  + K     V   E    T++     K
Sbjct: 593 GVPVDNLSNYNSQEEQILYVAGMEELKHSQLLFATQKAMLKQVSGQEFD-VTKRTIMATK 651

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++  +K+  V      ++V +       L F   ++PE  +G  GVR     +    +  
Sbjct: 652 LTEGDKVIFVAPSDAMEYVVLQSTQGYFLRFLKQEVPEKKKGAIGVRGMRLGEQDQLEHA 711

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                     I+       +        L KR   G+ 
Sbjct: 712 YLLEGHTEYTIEYKE----KKLTLNRLRLAKRDTKGTK 745


>gi|225374475|ref|ZP_03751696.1| hypothetical protein ROSEINA2194_00090 [Roseburia inulinivorans DSM
           16841]
 gi|225213713|gb|EEG96067.1| hypothetical protein ROSEINA2194_00090 [Roseburia inulinivorans DSM
           16841]
          Length = 746

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 210/758 (27%), Positives = 366/758 (48%), Gaps = 49/758 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 5   EEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ +   L  +D+D VDF   ++E + EP V P K PNLL NG+ GIAVGM TS P
Sbjct: 125 ARLQKITQEAFLSDLDKDVVDFVPNFDETEKEPEVLPVKIPNLLVNGSDGIAVGMVTSTP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +A I NP+I+ E+++EYI GPDFPTGGII  +++ +++ Y  G G  ++
Sbjct: 185 PHNLGEVIDGVIAYIKNPDINTEQMMEYIPGPDFPTGGIIA-NKDDLIQIYSTGMGKIKI 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +  VE+V  G   IV+TEIPY +      + +  +  L+  K+   + DI ++S+++ 
Sbjct: 244 RGKVEVEQVKGGKERIVITEIPYTMIGANIGKFLNDVYSLVETKKTNDIVDITNQSSKEG 303

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  D   L+  ++  + +E  F +   +      P+ + L  I++  +  + 
Sbjct: 304 IRIVLELRKGADTQNLINLLYKKTKLEDTFGV-NMLAVAEGRPETLGLVPIIRHHVKFQY 362

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------- 412
           E+  R+    ++    + EI +GL+ A   ID II I+R                     
Sbjct: 363 ELATRKYQTLLKKELDKKEIQEGLIKACDVIDLIIEILRGSKNVKDARACLTDGVTDNIT 422

Query: 413 ----PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                   M S    TE Q  AIL +RL+ L  LE   +  + ++ L    + + +L + 
Sbjct: 423 FKSAQSEKMASELRFTERQTTAILEMRLQKLIGLEIEALMKDHEDTLKHIAEYEDILENR 482

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 +  E++  K+ ++       R+T    +  A    +++  IE+  +  ++   G
Sbjct: 483 ATMAKVLIKELQSYKKQYAVP-----RKTLIDNLEEA---VVEEKKIEEMDVVFLMDRFG 534

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           + +++     + +          +  L    TD+I + +  G+ + L   +L  G+   +
Sbjct: 535 YAKTVDVSVYERNKEA--ADTENRYILTCKNTDKICIFTNKGQMHLLKVLDLPYGKFRDK 592

Query: 589 --AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              I  L + + +++     +        +LL  +      +V+ SE     R      K
Sbjct: 593 GIPIDNLSNYDSSEENFIYIINLGAIIHSRLLFGTKTAMLKMVDGSEFDVAKRTT-ASTK 651

Query: 644 VSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++ ++++ +V  +TG+  V +  E    L      IPE  +G  GVR      G     I
Sbjct: 652 LNEDDELLIVHAMTGEETVVMQSEKEMFLRIEASTIPEKKKGAVGVRGMKLNAGDALSNI 711

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                E    ++       +        +G R   G+ 
Sbjct: 712 YVLDGENEQTVEV----KGKEVVLNRLRVGNRDTKGTK 745


>gi|153855241|ref|ZP_01996407.1| hypothetical protein DORLON_02421 [Dorea longicatena DSM 13814]
 gi|149752240|gb|EDM62171.1| hypothetical protein DORLON_02421 [Dorea longicatena DSM 13814]
          Length = 746

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 215/762 (28%), Positives = 370/762 (48%), Gaps = 53/762 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MQDSQIIRTEYSDVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TEAR+ ++ +   L  +D+D VDF   ++E + EPVV P + PNLL NG  GIAVGMATS
Sbjct: 121 TEARLAKITQEAYLADLDKDIVDFIPNFDETEKEPVVLPVRIPNLLVNGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ E+ +   A + N EI+  +L++YI GPDFPTGGI+V +++ + E Y  G G  
Sbjct: 181 IPTHNLGEVVDGVKAYMKNEEITTRQLMKYIKGPDFPTGGIVV-NKDDLPEIYETGTGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +  VE++  G   +V+TEIPY +  +   + +  +  L+  K+   + DI ++S++
Sbjct: 240 KIRGKVEVEDMKGGKKRLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +   +      P+ M L  I++  +  
Sbjct: 300 EGIRIVIDLKKGADVENLTNMLYKKTRLEDTFGV-NMLAVADGRPETMGLKRIIEAHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------- 419
           + ++  R+    ++    + EI +GL+ A   ID II I+R     K             
Sbjct: 359 QFDMATRKYKTLLKKEQDKKEIQEGLIKACDVIDLIIEILRGSQNVKDAKACLMNGETEN 418

Query: 420 -------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                            TE Q  AIL +RL  L  LE   ++ E +  LA+ EK + +LN
Sbjct: 419 IKFKSSISKKMAGMLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLAKIEKYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I  ++  +K+ F+      R+R T  E +       ++   ++    +    
Sbjct: 479 NYDSMAAVIMEDLDRIKKEFA------RKRRTVVENAEEAVFEEKKVEEQEVVFLM---- 528

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
             +  +                +  K  LH   T +I + + DGK + +   ++  G+  
Sbjct: 529 DRFGYAKTVDVSTYERNKEAADNENKYILHCMNTGKICIFTKDGKMHQVKVMDIPYGKFR 588

Query: 587 GE--AIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKT 640
            +   I  + + +  Q+ +  ++ DS      KLL  + +G    VE +E    T++  T
Sbjct: 589 DKGQPIDNISNYDSTQEEI-VYICDSEQMRYAKLLFATKQGMIKKVEGTEFQ-VTKRTIT 646

Query: 641 FLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-I 697
             K+  E+++  + V     H+ +   +   L F   ++ E  +G  GVR    K    +
Sbjct: 647 ATKLQPEDEVVKIQVVTENQHIVLQTTDGFFLRFPAAEVTEKKKGAIGVRGIRLKKDDAL 706

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           +DV  F+              + +        L KR G G+ 
Sbjct: 707 TDVYLFEEGTECKI-----SYHEKEVTLNRLKLAKRDGTGTK 743


>gi|291535204|emb|CBL08316.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Roseburia intestinalis M50/1]
          Length = 745

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 210/758 (27%), Positives = 361/758 (47%), Gaps = 49/758 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 4   EEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYTE
Sbjct: 64  KCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGAAAMRYTE 123

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ +   L  +D+D V+F   ++E + EP V P K PNLL NG  GIAVGM TSIP
Sbjct: 124 ARLQKITQEAYLADLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAVGMTTSIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +  +A + +P+I+ E++++YI GPDFPTGGI+  +++ ++  Y  G G  ++
Sbjct: 184 PHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGIVA-NKDELLAVYSTGMGKIKI 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +  VE+   G   +V+TEIPY +      + +  I  L+ AK+   + DI ++S+++ 
Sbjct: 243 RGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVEAKKTSDIVDITNQSSKEG 302

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  D + L   ++  + +E  F +   +      P+ M +  I++  +  + 
Sbjct: 303 IRIVLELKKGADVENLKNLLYKKTKLEDTFGV-NMLAVADGKPETMGIVPIIRHHVNFQY 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------- 419
           E+  R+    +     + EI +GL+ A   ID II I+R     K               
Sbjct: 362 ELATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGITDNIN 421

Query: 420 -----------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                      +   TE Q  AIL +RL+ L  LE   +  + D  L    K + +L S 
Sbjct: 422 FKSEQSKRDAAKLRFTERQTTAILEMRLQKLIGLELEALLKDHDETLKNIAKYEDILGSR 481

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  E+   K+ ++K      R+T    +  A    +++  IE+  +  ++   G
Sbjct: 482 AAMAKVIIKELESFKKEYAKP-----RKTVIDNLEEA---VVEEKKIEEMDVVFLMDRFG 533

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           + +++   + + +          +  L    TD+I + +  G+ + L   +L  G+   +
Sbjct: 534 YAKTVDVATYERNKEA--ANTENRYILTCKNTDKICIFTNKGQMHLLKVLDLPYGKFRDK 591

Query: 589 --AIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              I  L + N +++    +T     S  ++L  +      +V+ SE     R      K
Sbjct: 592 GTPIDNLSNYNSSEENFVYITNLAAISHSQVLFGTKSAMLKVVDGSEFDVAKRTT-AATK 650

Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++  +++  V  +   + + +  E    L   I  IPE  +G  GVR      G     I
Sbjct: 651 LNEGDELIFVQALALEETLVMQSEKDFFLRIDISSIPEKKKGAVGVRGMKLGAGDALAAI 710

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                E +  I+       +           R   G+ 
Sbjct: 711 YLLNAEDVVNIEV----KGKEVALNRLRTAGRDTKGNK 744


>gi|328675629|gb|AEB28304.1| Topoisomerase IV subunit A [Francisella cf. novicida 3523]
          Length = 741

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 251/735 (34%), Positives = 408/735 (55%), Gaps = 18/735 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P+ +IE++LE I  PD+P G  I+ S+E I E Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPDSTIEEILEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKN 317
                   +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES +    RIVL+   
Sbjct: 252 ----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVRIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   ++  +   +D+E  F +NMN++ +   PQV  L  +LK+WL +R+  L RR  
Sbjct: 308 TKKNIKKIIGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDVLKQWLEYRKNTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSDELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++   F        RR+
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILADFGD-----SRRS 482

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 +A +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 483 KVIAAEKA-QALEEKDLMPSERVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAEYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV-VGENRKLLIFSID 676
           S  G  F++   ++I N   GK    +   + +   +    DH  + +    ++++    
Sbjct: 602 SESGKGFVIPAEDLITNKVTGK---NIFDADDVFKFIPFDQDHKMLAISSEGRIIVRDFS 658

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRGG 735
               + +GKG  +           I          +++  R     S+N    +  K  G
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTLNAGKRFIRIDSKNIETYYSDKPSG 718

Query: 736 VGSLVPKGFPRSGKF 750
            G L+P+GF +  K 
Sbjct: 719 GGVLLPQGFRKITKI 733


>gi|119026025|ref|YP_909870.1| DNA topoisomerase IV subunit A [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765609|dbj|BAF39788.1| DNA gyrase subunit A [Bifidobacterium adolescentis ATCC 15703]
          Length = 891

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/848 (26%), Positives = 363/848 (42%), Gaps = 113/848 (13%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L+ 
Sbjct: 13  DPRTVKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM   A  +   + E+ VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARMAPAALGMNADIAENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P GG ++  R+ I E+Y  GRG
Sbjct: 192 TNMATHNLGEVVAAAKHLMRHPDATLEELMRYVPGPDWPGGG-VIVGRKGIREAYETGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +    D +   
Sbjct: 251 ALTTRSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLDGISGAIDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP+ ++  +F  + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 311 NGTRLVIEIKTGFDPNAVLAQLFKHTPLQDNFTINNVALV-NGRPHTMGLKEMLQVWVDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLT 424
           RR V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D  +         F L 
Sbjct: 370 RRVVIRRRSEFRRKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIAVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   ++++E D+L    E+++ +L S +     +  E+ +   
Sbjct: 430 EIQAQYILDLRLRRLTKMSRIELEAERDDLKRRIEELERILASDEALDGVVIDEMDDAVA 489

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAM------------------------------ 514
            +        RRT   +       T   A                               
Sbjct: 490 KYGTP-----RRTVLLDEDEEGNLTPVVAHGDDGVSANAMAAARAAATVSSAAADVAAAA 544

Query: 515 -----------------IEKEPITVVISNRGWIRSLKSHSVDLSALH-----FKEGDSLK 552
                            I+ EP  V++S  G I      +V+            + D + 
Sbjct: 545 KAAKKAGDENATASALQIDDEPCAVMLSATGLIARTSEDAVERWENRSASDGRAKDDQIV 604

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHN 599
                 T     L+++ G+        L      G               +    D    
Sbjct: 605 SMFRTSTRSSYGLVTSAGRLVLAHVVELPKVSADGPLSVTGGVKAEELLGMTENTDPIRG 664

Query: 600 QDIVTAF---VYDSTCKLL---VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           + ++ A      D   +L+   + +  G             T    + + +  ++++   
Sbjct: 665 ERVIAAIDMPSTDDDGQLVPLALGTRNGVVKRWNRE--SPTTMDSWSVIDLKDDDEVLAA 722

Query: 654 VKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
            +    D +  V  +  LL F    +    R   G+      +G  +          +TW
Sbjct: 723 AEARDEDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIRLAEGCSAAAFAVVPDGKVTW 782

Query: 712 --------------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                                     +        +     +     RG  G    +   
Sbjct: 783 NYEEGENGLFSASGAVVLTVAGDSEALPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFLK 842

Query: 746 RSGKFLSS 753
                + +
Sbjct: 843 GQDTLILA 850


>gi|266624328|ref|ZP_06117263.1| DNA gyrase subunit A [Clostridium hathewayi DSM 13479]
 gi|288863830|gb|EFC96128.1| DNA gyrase subunit A [Clostridium hathewayi DSM 13479]
          Length = 745

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 217/762 (28%), Positives = 368/762 (48%), Gaps = 54/762 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L+     
Sbjct: 1   MAEKIVKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ + AE + L+ +D+  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSI
Sbjct: 121 EARLEKFAEEVYLKDLDK-TVEFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A +A IDNP+IS  +L+EY+ GPDFPTGGII  ++  + E Y  G G  +
Sbjct: 180 PPHNLGEVIDAVMAYIDNPDISTRELMEYMPGPDFPTGGIIA-NKSGLAEIYETGSGKIK 238

Query: 252 VRARWCVE--EVGRGSWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +  +E  +       +V+TEIPY +     ++ +  +AEL+ +K++  + DI ++S 
Sbjct: 239 LRGKIDIELGKRKADKDKMVITEIPYTMIGAGINKFLVDVAELVESKKLTDVVDISNQSN 298

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   ++    +  D + +   ++  + +E  + +   +   G  P+ + L GILK +L 
Sbjct: 299 KDGIRIVLELKKDADVEKIRNILYKKTKLEDTYGV-NMLAIAGGRPETLNLKGILKNYLD 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF----- 421
            +     R+    ++    + EI +GL+ A   ID IIA++R     K            
Sbjct: 358 FQYHNATRKYQALLEKELEKKEIREGLIKACDIIDLIIAVLRGSKNLKDAKACLMTGDTS 417

Query: 422 ----------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                             TE Q  AIL +RL  L  LE   ++ E    +A+  +   +L
Sbjct: 418 NIKFRVSGFAEDAKNLHFTEKQASAILEMRLYKLIGLEILALEKEYKETMAKIAEYRHIL 477

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S       I  ++  +KE F+       RRT   +   A      +  +    +  V+ 
Sbjct: 478 ESRSNMDVVIKKDLAAIKEEFATP-----RRTLIEDGKEA---VYDETAVAVSEVVFVMD 529

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
             G+ + L   + D +    +  +     +    TD+I + +  G  + + A ++  G+ 
Sbjct: 530 RFGYCKLLDKSTYDRNRETIETENV--HVVSCFNTDKICMFTNTGNLHQVKAADIPYGKL 587

Query: 586 HGE--AIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             +   I  L   +  ++ +            + L  + +     V   E   N R    
Sbjct: 588 RDKGTPIDNLSKYDGTKEEIIYLCSAESMKGSRFLFATRQALVKRVPGEEFETNNRT-VA 646

Query: 641 FLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K+   + +  ++ +  +  V +   N   L F++++IPEM +  +GVR      G   
Sbjct: 647 ATKLQDGDGVVSILVLRAETEVVLQTSNGVFLRFALEEIPEMKKNSRGVRGIKLAQGEEL 706

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           +   + + E             +  +     +GKR G GS V
Sbjct: 707 E-TVYLLGEDPVV-----EYKKKEVHLNRLKIGKRDGKGSKV 742


>gi|229825734|ref|ZP_04451803.1| hypothetical protein GCWU000182_01097 [Abiotrophia defectiva ATCC
           49176]
 gi|229790297|gb|EEP26411.1| hypothetical protein GCWU000182_01097 [Abiotrophia defectiva ATCC
           49176]
          Length = 745

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 233/762 (30%), Positives = 374/762 (49%), Gaps = 54/762 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EEN+        ++  Y  Y++S I  RA+PD+RDG KPV RRI++AM+E+GL     
Sbjct: 2   VTEENIIIQDFSEEMKNSYRDYSVSVIISRALPDVRDGLKPVQRRILYAMNELGLAPDKQ 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            +KSARIVG+ +GK HPHGD S+YD+LV +A+ +    PL+ G GNFG+IDGDSAAA RY
Sbjct: 62  HRKSARIVGDTMGKYHPHGDSSIYDALVHMAEEWSMSVPLVDGHGNFGSIDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+++ A  +L G+D + VDF   ++E + EPV+ P+K P LL NGT+GIAVGMAT+I
Sbjct: 122 TEARLSKGAMNLLTGLDRNLVDFVPNFDEREKEPVILPAKLPFLLINGTTGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN  EI + A+AL+DNPE++ EKL++YI GPDFPTGGII  + + I   Y  G G  R
Sbjct: 182 PPHNPGEIIKGAIALLDNPELTTEKLMKYIPGPDFPTGGIIA-NADEIANIYENGEGRLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           VR ++ +E+   G   IV+TEIP+     KSRL+E +  L+  K    + D+RDES+ DV
Sbjct: 241 VRGKYIIEDGEYGKKNIVITEIPFTSTGNKSRLVESLVNLMKDKVFDEIADVRDESSSDV 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K    + + L+  IF  + +E  + +   +    + P++  L GIL+E+L    
Sbjct: 301 RIVVEVKKGR-NVENLLNGIFKKTPLEDTYSV-NMLAVRDKQPKIFSLKGILEEFLGFEE 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------- 419
           E+  +  +  ++    R E+++GL+ A   ID II ++R  +  K               
Sbjct: 359 ELYTKEYTHLLEKAKSRAEVVEGLIKAVDVIDLIIEVLRGSESIKQAKDCLVNGNIAEIK 418

Query: 420 -----------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                       F  TE Q DAIL + L  L  LE  ++ +E +NL    E+ + +L+  
Sbjct: 419 FKSEASKKAAKEFDFTEPQADAILAMPLSRLIGLEVLKLSTEAENLKQNIEEYNKILSDK 478

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  +++   + F K     RR     E  +           E +   V +    
Sbjct: 479 TELHRVIKTDLKANVKNFEKP----RRTELLNEEKQVYV-------EEVKEEDVYVLIDR 527

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +  +       +S  + +  +     +    TDRI + +  G  + + A ++   R   +
Sbjct: 528 FGYAKSVDVSSISKANEEALNEYPTKIMMKNTDRICIFTASGNMHQVKAKDIPKVRLRDK 587

Query: 589 AI-QLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
                 I     ++I+    +       +   + KG   +V   E   N R      K+ 
Sbjct: 588 GTLVHNISKVGKEEIILYTSFAELFESMVFFATRKGFVKLVSGVEFDTN-RSVMLATKLE 646

Query: 646 SEEKMKLVVKVTGDHVA-------VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             +++  V  ++   +        ++ + +  L + +D++ EM + G+GV+  S  +   
Sbjct: 647 EGDELLSVRVLSAAEILSHDLRVYMLTKKKIGLSYLLDEVVEMKKSGRGVKGISLAEDDE 706

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
              +  +I                        L KR   G  
Sbjct: 707 VKGVAVEISATTEVEFDGDSYKVAK-----FKLKKRAAKGDK 743


>gi|257054878|ref|YP_003132710.1| DNA topoisomerase IV subunit A [Saccharomonospora viridis DSM
           43017]
 gi|256584750|gb|ACU95883.1| DNA topoisomerase IV subunit A [Saccharomonospora viridis DSM
           43017]
          Length = 827

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/772 (28%), Positives = 372/772 (48%), Gaps = 45/772 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    +   +EE YL YA S I  RA+PD RDG KPVHRRI+++M E G     A+ KS
Sbjct: 22  RVFDNPVTTEIEESYLEYAYSVIHSRALPDARDGLKPVHRRILYSMYESGYRPNHAYVKS 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VG+V+G+ HPHGD ++YD++VRLAQ F    PL+ G GNFG+ D D  AA RYTEAR
Sbjct: 82  SRVVGDVMGRYHPHGDTAIYDAMVRLAQDFSMNVPLVDGHGNFGSPD-DGPAASRYTEAR 140

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+  A L++  + ED VDFR  Y+    EP V P+ FPNLL NGTSGIAVGMAT++  HN
Sbjct: 141 MSSEAMLLVDELGEDTVDFRPNYDGSLQEPSVLPAAFPNLLVNGTSGIAVGMATNMIPHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI  AA  LI++P  S++KL+E++ GPD PTGG ++   + + ++Y  GRG  R+RA+
Sbjct: 201 LGEIVAAARWLINHPNASLDKLMEFVPGPDLPTGGQLL-GLDQVRKAYETGRGVVRMRAK 259

Query: 256 WCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI-PLLEDIRDESAEDV-RIV 312
                + G     I VTE+PY V   ++IE+I E +   +    + D++D +  +    +
Sbjct: 260 ATTGPIEGSRRQGITVTELPYGVGPEKVIERITEEVNKTKRLTGIADVKDLTDRENGTKL 319

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +      ++P  L+  ++ L+ +E  F +N  VL     P+ + L  +L+ +LAHR EV+
Sbjct: 320 VIECKVGVNPQALLADLYRLTPLEQSFGINNLVLVD-GQPRTLGLKELLEVFLAHRYEVV 378

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
            RR+ +R +  + R+ +++GLL A ++ID++I +IR  +  +     ++ RF L+E Q  
Sbjct: 379 TRRTRYRRRKREERLHLVEGLLKALVDIDKVIKLIRGSENAQAAKEGLMKRFKLSEVQAA 438

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL+  LR L K ++ +++SE D L  E  ++  +L+  K     ++ E+ +V + F+  
Sbjct: 439 YILDTPLRRLTKYDKLELESEQDRLRKEIAELTEILDDEKVLKRVVSKELAKVAKDFAVP 498

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHS----VDLS 541
                RRT   +    +     +         +P  V++S+ G +    + S        
Sbjct: 499 -----RRTALIDGDLKEVLAASKPAGPLEVADDPCQVILSSTGLVARTAAESEEAVEGRR 553

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--------LPAGNLLSGRGHGEAIQLL 593
                  D++   +H     ++LL++  G+A+         LP  +       G  ++ L
Sbjct: 554 RSGRARHDAIAAMVHTTARGQVLLVTNRGRAFKTDVLPLPVLPESSGTVSLRDGVDVREL 613

Query: 594 IDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
             L  ++ +V         +    L + +  G   +                + +   ++
Sbjct: 614 APLERDERVVGLAPLGEQAQGSPGLALGTRHGVVKVCAPD--WPVRSDEFDVITLKDGDE 671

Query: 650 MKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKIC 706
           +     +T   + +  V     LL F    +     RG GV   +               
Sbjct: 672 VVGATWLTDGAETLTFVTSQASLLRFDASLVRPQGLRGGGVAGINLPKDSEVVFFGAVRT 731

Query: 707 EGLT-----WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +         + + G +  +           R   G    +      + + +
Sbjct: 732 DDAEHGEPMVVTATGET-VKVTPLSQYPAKGRATGGVRAHRFLKGETRLVLA 782


>gi|149916749|ref|ZP_01905251.1| type II DNA topoisomerase, A subunit [Plesiocystis pacifica SIR-1]
 gi|149822466|gb|EDM81855.1| type II DNA topoisomerase, A subunit [Plesiocystis pacifica SIR-1]
          Length = 832

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 252/769 (32%), Positives = 405/769 (52%), Gaps = 54/769 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE-MGLDFGAAFKKS 75
           +    L      +YL YALS I  RAIPD+RDG KPV RRI+  M E + L F A  +KS
Sbjct: 44  IVDGDLAEHARRKYLNYALSVITSRAIPDVRDGLKPVQRRILFTMFEDLRLTFDARHRKS 103

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VG+VIGK HPHGD +VYD++VR+AQ F  R PL+ GQGNFG+IDGDSAAAYRYTEA+
Sbjct: 104 AKVVGDVIGKYHPHGDSAVYDAMVRMAQAFNMRMPLVDGQGNFGSIDGDSAAAYRYTEAK 163

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  ++  +  D V+FR TY+    EP+V P++FP LL NGT+GIAVGMATSIP HN
Sbjct: 164 LSKLAAELITEIKRDTVEFRPTYDGTGREPIVLPARFPQLLVNGTTGIAVGMATSIPPHN 223

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A L LID P+ S+ K++  I GPDFPTGG +V  R+ +  +Y  G+G F++R  
Sbjct: 224 LGEVIRACLLLIDEPDASVAKVMGKIKGPDFPTGGQLVAERKELRAAYETGKGTFKLRGS 283

Query: 256 WCVEEVGRG---------SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           W  +E             +  +V+TEIP+ VQKS L+E+I ++I++K++P++  ++D S 
Sbjct: 284 WKYQEGKETKQGRKRVVENPRVVITEIPWGVQKSSLVEEIGQVILSKKLPVVIGVQDLST 343

Query: 307 EDVRIVLF-PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL-----DGI 360
           ED+R+ L       +DP+L+M  +F  + ++T   L++ VL+    P+V          I
Sbjct: 344 EDIRVELELDPKSEVDPELVMAYLFKHTRLQTTVKLDLTVLTPTDNPEVSAPARLDLKSI 403

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVM 417
           L+ +L  R + + RR  + ++ ++ R+ IL+G  + + ++D+ I IIR  +        +
Sbjct: 404 LRYFLDFRLQTVRRRFEYELRKLEERIHILEGFELIFNDLDKAIRIIRRSEGKADAAKKL 463

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  F L++ Q DA+L  RL  L KLE  +I+ EL +   + ++I ++L S K+ W  +  
Sbjct: 464 IKAFELSDIQADAVLETRLYKLAKLEILKIEEELADKRKQAKRIRAILKSKKKLWGVVRD 523

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E++ +   ++       RR T  +     +    ++ I +E   V+++  GWI+  +  +
Sbjct: 524 ELQALSGEYAD------RRRTRIDAEDLTEEFSAESFIVEEDAMVLVTRDGWIKRQR--N 575

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           V+L     +EGD+    +   T D ++L S  G AY +   ++ +  GHG  +Q L    
Sbjct: 576 VNLETTRMREGDAPLALVGGSTRDCVVLFSNRGSAYVIRVNDVPASSGHGTPVQKLFKFK 635

Query: 598 HNQDIVTAFVY---------------------DSTCKLLVVSSKGNAFIVEE-SEIIANT 635
             + +++                         D     L V+  G A           +T
Sbjct: 636 DGEKVISVTTTDPRFMLEFAEAEKPELGEEFEDPYPHFLAVTRGGMALRFTLWPHREPST 695

Query: 636 RKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK 693
           R G+ + K  + ++   V +V   D V  + +  KLL  ++  +  +   G+GV L    
Sbjct: 696 RSGRLYGKTKAGDEFVEVFQVWGDDDVCALTQKGKLLCCNVMDVNLLAGPGRGVTLIKTD 755

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           D      +            S G             +  RGG G  + K
Sbjct: 756 DKDGVVAVWKTSVSAEIKKSSGG---TIKVVKGKATVTNRGGKGRPLMK 801


>gi|319941585|ref|ZP_08015911.1| DNA topoisomerase IV [Sutterella wadsworthensis 3_1_45B]
 gi|319804955|gb|EFW01797.1| DNA topoisomerase IV [Sutterella wadsworthensis 3_1_45B]
          Length = 902

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 263/753 (34%), Positives = 405/753 (53%), Gaps = 42/753 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L     + YL YA+S +K RA+P++ DG KPV RRI+  M  MGL F     KSARIV
Sbjct: 108 LTLARYASQAYLEYAMSVVKSRALPEVTDGQKPVQRRILIDMYRMGLKFEGRSVKSARIV 167

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQSVYD+LVR+AQ F  RYPL+  +GNFG+ DGDSAAA RYTE R+T +
Sbjct: 168 GDVLGKYHPHGDQSVYDALVRMAQTFSLRYPLLVAEGNFGSRDGDSAAAMRYTETRLTPI 227

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++L+L+ VD  +VDF+  Y+    EPV  P+K P +L NG+SGIAVGMAT IP HN+ E+
Sbjct: 228 SQLLLEEVDLGSVDFQPNYDGNFQEPVELPAKLPFVLLNGSSGIAVGMATEIPPHNLGEV 287

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A + L++NP+  + ++LE +  PDFP GG I+  ++ I   YR GRG  RVRARW  E
Sbjct: 288 AAACVRLLENPDADLNEILELMPAPDFPCGGQIITPKDEIRAIYRSGRGKLRVRARWHFE 347

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP------------------LLEDI 301
           ++ RG W +V+ E+P       ++++I ++   +                     LL+++
Sbjct: 348 DLARGQWQLVIDELPPAASARSILDRIEQISNPRPKKDKKTLSAKQQQAKSAMLSLLDNV 407

Query: 302 RDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES  + DVR+V  PK   +D D  +  +   +D+E+  P+N+ +L +   P+   L  
Sbjct: 408 RDESGKSVDVRLVFEPKTSKVDRDEFVNYLLSETDLESNVPVNLVMLGLDGKPRQKGLLE 467

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL++W+A R  V+ RRS  R++ +  R+ +L+G  +  LNID +IAIIRN D PK  ++ 
Sbjct: 468 ILQDWIAFRLAVVRRRSEARLEKVLDRIHVLEGRSLVLLNIDRVIAIIRNADDPKADLIK 527

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LT+ Q D IL +RL+ L +L    I+ EL  L  E+  ++ +L S      Q A EI
Sbjct: 528 EFGLTDRQADDILEIRLKQLARLAAIAIEKELAQLAKERAGLEKILGSDGALKRQTAKEI 587

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + F+       RRT   E  +A      +     EP+TVVIS +G++R+   H  D
Sbjct: 588 EAAAKSFADP-----RRTVVEEAEQAAH----EVQTADEPVTVVISRKGFLRARTGHGHD 638

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            S + FK GD L+  +   ++ +I  L   G+ YTL    L  GRG G  +   +DL   
Sbjct: 639 CSLMSFKTGDGLEATIECRSSSQISFLDQAGRVYTLAVSALPGGRGDGSPLSAFVDLPKG 698

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----- 654
                    D     ++V+S G   +++ S++    + G+ F+ +   E +   +     
Sbjct: 699 AQPAGWISADPNAAAVIVTSGGKGMVLKASDVSTRLKAGRDFVTLGEGESLLPPIELPLK 758

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G+  +A +  + +LL+F + ++    S GKG+   + + G     +      G   +
Sbjct: 759 AAQGEQLIACLSSSNRLLVFPLKEVRVTASGGKGMSFMTLETGESLVSVALVDERGA-IV 817

Query: 713 DSAGRSYNRSENDLLGWLGK-----RGGVGSLV 740
              GR     E  +   +       R   G ++
Sbjct: 818 TGTGRGGKAREAQISKRILGGATLHRARRGKVL 850


>gi|291539735|emb|CBL12846.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Roseburia intestinalis XB6B4]
          Length = 749

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 209/758 (27%), Positives = 361/758 (47%), Gaps = 49/758 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 8   EEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYTE
Sbjct: 68  KCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGAAAMRYTE 127

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ +   L+ +D+D V+F   ++E + EP V P K PNLL NG  GIAVGM TSIP
Sbjct: 128 ARLQKITQEAYLEDLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAVGMTTSIP 187

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +  +A + +P+I+ E++++YI GPDFPTGGI+  +++ ++  Y  G G  ++
Sbjct: 188 PHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGIVA-NKDELLAVYSTGMGKIKI 246

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +  VE+   G   +V+TEIPY +      + +  I  L+  K+   + DI ++S+++ 
Sbjct: 247 RGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVETKKTSDIVDITNQSSKEG 306

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  D + L   ++  + +E  F +   +      P+ M +  I++  +  + 
Sbjct: 307 IRIVLELKKGADVENLKNLLYKKTKLEDTFGV-NMLAVADGKPETMGIVPIIRHHVNFQY 365

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------- 419
           E+  R+    +     + EI +GL+ A   ID II I+R     K               
Sbjct: 366 ELATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGITDNIN 425

Query: 420 -----------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                      +   TE Q  AIL +RL+ L  LE   +  + D  L    K + +L S 
Sbjct: 426 FKSEQSKRDAAKLRFTERQTTAILEMRLQKLIGLELEALLKDHDETLKNIAKYEDILGSR 485

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  E+   K+ ++K      R+T    +  A    +++  IE+  +  ++   G
Sbjct: 486 AAMAKVIIKELESFKKEYAKP-----RKTVIDNLEEA---VVEEKKIEEMDVVFLMDRFG 537

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           + +++   + + +          +  L    TD+I + +  G+ + L   +L  G+   +
Sbjct: 538 YAKTVDVATYERNKEA--ANTENRYILTCKNTDKICIFTNKGQMHLLKVLDLPYGKFRDK 595

Query: 589 --AIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              I  L + N +++    +T     S  ++L  +      +V+ SE     R      K
Sbjct: 596 GTPIDNLSNYNSSEENFVYITNLAAISHSQVLFGTKSAMLKVVDGSEFDVAKRTT-AATK 654

Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++  +++  V  +   + + +  E    L   I  IPE  +G  GVR      G     I
Sbjct: 655 LNEGDELIFVQALALEETLVMQSEKDFFLRIDISSIPEKKKGAVGVRGMKLGAGDALAAI 714

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                E +  I+       +           R   G+ 
Sbjct: 715 YLLNAEDVVNIEV----KGKEVALNRLRTAGRDTKGTK 748


>gi|254373919|ref|ZP_04989401.1| hypothetical protein FTDG_00074 [Francisella novicida GA99-3548]
 gi|151571639|gb|EDN37293.1| hypothetical protein FTDG_00074 [Francisella novicida GA99-3548]
          Length = 742

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 252/735 (34%), Positives = 407/735 (55%), Gaps = 18/735 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKN 317
                   +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES +    +IVL+   
Sbjct: 252 ----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 TKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++   F        RR+
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILTDFGD-----SRRS 482

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 +A +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 483 KIIVAEKA-QALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISIAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV-VGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    DH  + +    +++I    
Sbjct: 602 SESGKAFVIPAEDLITNKITGK---NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRGG 735
               + +GKG  +           I          +++  R     S+N    +  K  G
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTLNAGKRFIRIDSKNIETYYSDKPSG 718

Query: 736 VGSLVPKGFPRSGKF 750
            G L+P+GF +  K 
Sbjct: 719 GGVLLPQGFRKITKI 733


>gi|328676554|gb|AEB27424.1| Topoisomerase IV subunit A [Francisella cf. novicida Fx1]
          Length = 742

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 252/735 (34%), Positives = 407/735 (55%), Gaps = 18/735 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKN 317
                   +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES +    +IVL+   
Sbjct: 252 ----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 TKSNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++   F        RR+
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILIDFGD-----SRRS 482

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 +A +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 483 KIIVAEKA-QALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISIAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV-VGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    DH  + +    +++I    
Sbjct: 602 SESGKAFVIPAEDLITNKVTGK---NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRGG 735
               + +GKG  +           I          +++  R     S+N    +  K  G
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTLNAGKRFIRIDSKNIETYYSDKPSG 718

Query: 736 VGSLVPKGFPRSGKF 750
            G L+P+GF +  K 
Sbjct: 719 GGVLLPQGFRKITKI 733


>gi|291519485|emb|CBK74706.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Butyrivibrio fibrisolvens 16/4]
          Length = 746

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 209/762 (27%), Positives = 364/762 (47%), Gaps = 52/762 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +        +++ ++ Y++S I  RA+PD+RDG KPV RR ++ M E+ +D+   +
Sbjct: 1   MAQEIIRTEYSEIMQKSFIDYSMSVILARAVPDVRDGLKPVQRRTLYDMYELKVDYNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+ +GK HPHGD S+Y++LV ++Q F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 61  KKSARIVGDTMGKYHPHGDSSIYEALVVMSQDFKKSLPLVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ +VA+ + L  +D++ VDF   Y+E + EP V P + PNLL NG+ GIAVGM TSI
Sbjct: 121 EARLAKVAQEVYLGDLDKNVVDFIPNYDETEKEPEVLPVRVPNLLINGSDGIAVGMVTSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A + NP+IS  ++++ I GPDFPTGGI+  +++ ++E Y  G G  +
Sbjct: 181 PQHNLGEVVDGVIAYMKNPDISTPEMMQIIPGPDFPTGGIVT-NKDDLLEIYSTGLGKIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R +  +E++  G   IV+TEIPY +      + +  I  L+  K+   + DI ++S  +
Sbjct: 240 IRGKAEIEKLKGGKEQIVITEIPYPMIGANIGKFLNDIYSLVETKKTNDIVDISNQSKGE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  D   ++  ++  + +E  F +   +      P+ + +  I++  +  +
Sbjct: 300 QMRIIVELRKGADAQNVLNLLYKKTRLEDTFGV-NMLAVADGKPETLGIVPIIRHHVDFQ 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------- 419
            E+  R+ +  +     + EI +GL+ A   ID II I+R     K              
Sbjct: 359 YELCTRKYNHLLGKEQEKKEIQEGLIKACDVIDLIIEILRGSKDVKQAKACLVDGITAGI 418

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                       +   TE Q  AIL++RL  L  LE   ++ +    L +  K   +L S
Sbjct: 419 KFKSQKSKADAEQLHFTERQAQAILDMRLHRLIGLEIEALRGDYAETLDKIAKYTKILGS 478

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    I  +++ +K+ ++       RRT    V  A    +++  IE   + V+I   
Sbjct: 479 RAEMAKVIIKDLQAIKKEYA-----RERRTVIDNVEEA---VVEEKPIEVIDVAVLIDRF 530

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
            + R +   + + +    +        +    TD+I L +  G  +T+   +L  G+   
Sbjct: 531 AYARVVDMPTYERNKEAAETESKKI--VFCKNTDKICLFTEKGDMHTIKVLSLPFGKFRD 588

Query: 588 EAIQ-------LLIDLNHNQDIVT-AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           +            IDL     I   A       KL+  + +    +V+ SE   + +   
Sbjct: 589 KGQPIDTAEKGSKIDLTKENLIFADAMENIKDKKLIFGTKQAMIKLVDGSEFDVSRKT-I 647

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
              K++ ++++  V  +  GD V +       L    D IPE  +   GVR      G  
Sbjct: 648 AATKLNDKDEVICVKIINPGDTVVMQSAKDMFLRIEGDTIPEKKKTAAGVRGIKLAKGDE 707

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
              I   + EG +      +  ++        +G R   G  
Sbjct: 708 LTNIYV-LAEGDSIEV---KVKDKEVALNRLHIGTRDTKGVK 745


>gi|257414210|ref|ZP_04745589.2| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|257200859|gb|EEU99143.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
          Length = 749

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 209/758 (27%), Positives = 360/758 (47%), Gaps = 49/758 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 8   EEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYTE
Sbjct: 68  KCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGAAAMRYTE 127

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ +   L  +D+D V+F   ++E + EP V P K PNLL NG  GIAVGM TSIP
Sbjct: 128 ARLQKITQEAYLADLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAVGMTTSIP 187

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +  +A + +P+I+ E++++YI GPDFPTGGI+  +++ ++  Y  G G  ++
Sbjct: 188 PHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGIVA-NKDELLAVYSTGMGKIKI 246

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +  VE+   G   +V+TEIPY +      + +  I  L+  K+   + DI ++S+++ 
Sbjct: 247 RGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVETKKTSDIVDITNQSSKEG 306

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  D + L   ++  + +E  F +   +      P+ M +  I++  +  + 
Sbjct: 307 IRIVLELKKGADVENLKNLLYKKTKLEDTFGV-NMLAVADGKPETMGIVPIIRHHVNFQY 365

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------- 419
           E+  R+    +     + EI +GL+ A   ID II I+R     K               
Sbjct: 366 ELATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGITDNIN 425

Query: 420 -----------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                      +   TE Q  AIL +RL+ L  LE   +  + D  L    K + +L S 
Sbjct: 426 FKSEQSKRDAAKLRFTERQTTAILEMRLQKLIGLELEALLKDHDETLKNISKYEDILGSR 485

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  E+   K+ ++K      R+T    +  A    +++  IE+  +  ++   G
Sbjct: 486 AAMAKVIIKELESFKKEYAKP-----RKTVIDNLEEA---VVEEKKIEEMDVVFLMDRFG 537

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           + +++   + + +          +  L    TD+I + +  G+ + L   +L  G+   +
Sbjct: 538 YAKTVDVATYERNKEA--ANTENRYILTCKNTDKICIFTNKGQMHLLKVLDLPYGKFRDK 595

Query: 589 --AIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              I  L + N +++    +T     S  ++L  +      +V+ SE     R      K
Sbjct: 596 GTPIDNLSNYNSSEENFVYITNLAAISRSQVLFGTKSAMLKVVDGSEFDVAKRTT-AATK 654

Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++  +++  V  +   + + +  E    L   I  IPE  +G  GVR      G     I
Sbjct: 655 LNEGDELIFVQALALEETLVMQSEKDFFLRIDISSIPEKKKGAVGVRGMKLGAGDALAAI 714

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                E +  I+       +           R   G+ 
Sbjct: 715 YLLNAEDVVNIEV----KGKEVALNRLRTAGRDTKGTK 748


>gi|254372457|ref|ZP_04987946.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570184|gb|EDN35838.1| DNA topoisomerase IV subunit A [Francisella novicida GA99-3549]
          Length = 742

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 252/735 (34%), Positives = 407/735 (55%), Gaps = 18/735 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKN 317
                   +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES +    +IVL+   
Sbjct: 252 ----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 TKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++   F        RR+
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILTDFGD-----SRRS 482

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 +A +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 483 KIIVAEKA-QALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKKDQIISIAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV-VGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    DH  + +    +++I    
Sbjct: 602 SESGKAFVIPAEDLITNKITGK---NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRGG 735
               + +GKG  +           I          +++  R     S+N    +  K  G
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTLNAGKRFIRIDSKNIETYYSDKPSG 718

Query: 736 VGSLVPKGFPRSGKF 750
            G L+P+GF +  K 
Sbjct: 719 GGVLLPQGFRKITKI 733


>gi|163788232|ref|ZP_02182678.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Flavobacteriales bacterium ALC-1]
 gi|159876552|gb|EDP70610.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Flavobacteriales bacterium ALC-1]
          Length = 622

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 217/627 (34%), Positives = 358/627 (57%), Gaps = 32/627 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRANSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +A I+N +I I++L+++I  PDFPTGG I    + + E++  GRG   +RA
Sbjct: 185 NLTEVVNGTIAYIENNDIEIDELIQHIKAPDFPTGGTIY-GYDGVKEAFHTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV  G  CI+V EIPYQV K+ +I+K A+L+  K++  +  IRDES  +   +++
Sbjct: 244 KANIEEVN-GRECIIVNEIPYQVNKADMIKKTADLVNDKKLEGISTIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  +F  + +++ F +N   L     PQ++ L  ++  ++ HR EV+ R
Sbjct: 303 VLKRDAIPNIVLNKLFKYTALQSSFSVNNIALV-NGRPQLLNLKELIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IA+IR            + RF L+E Q  AI
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASANADEARAKLIERFKLSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D L+   E +  +L+   ++ + I  E+  VK+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDALMKTIEDLKDILDKKDRRMDIIKEELEVVKDKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+       A      + MI  E + + IS+ G+I+              V   A 
Sbjct: 480 ---RRSNI---EYAGGDLSIEDMIPDEKVVITISHAGYIKRTSLTEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             +  D L+          +L  +  GK + +    +  G    +  AIQ LI++  +  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGAKTSKGRAIQNLINIEQDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSK 620
           ++            Y ++  +++ +  
Sbjct: 594 VMAFICTQDLKDDDYINSHYVIMATKN 620



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 7/101 (6%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMK-LVVKVTGDHVAV 663
           +      ++ +S  G       +E     R G         +E+ ++ L V     ++  
Sbjct: 496 MIPDEKVVITISHAGYIKRTSLTEYKTQNRGGVGQKASTTRNEDFLEHLFVGTNHQYMLF 555

Query: 664 VGENRKLLIFSIDQIPE---MSRGKGVR-LQSYKDGGISDV 700
             +  K     + +IPE    S+G+ ++ L + +       
Sbjct: 556 FTQKGKCFWMRVFEIPEGAKTSKGRAIQNLINIEQDDKVMA 596



 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 12/36 (33%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           I +    I  +   Y +  +        RGGVG   
Sbjct: 497 IPDEKVVITISHAGYIKRTSLTEYKTQNRGGVGQKA 532


>gi|28572429|ref|NP_789209.1| DNA topoisomerase IV subunit A [Tropheryma whipplei TW08/27]
 gi|28410560|emb|CAD66947.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
          Length = 821

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 213/757 (28%), Positives = 369/757 (48%), Gaps = 21/757 (2%)

Query: 1   MGVDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  D     + + + E +  V L   +++ +L YA S I  RA+PD RDG KPV RRI++
Sbjct: 1   MDKDIPEIFDVISDNEKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            MS MGL    A  K AR+ GEV+GKLHPHGD ++YD+LVR++Q F  R PLI G GNFG
Sbjct: 61  TMSRMGLSPDKAHVKCARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++  D  AA RYTEAR+++ A  ++  ++ + VDF   Y+ + ++P V P+  PNL+ NG
Sbjct: 121 SL-NDGPAASRYTEARLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNG 179

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMATSIP HN+QE   AA+ L+ N + S+E++++ + GPDFPTG IIV  +E+ 
Sbjct: 180 SSGIAVGMATSIPPHNLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIV-GKEAF 238

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E Y  G+G F++RA+  ++  G G   +V+TE+PY V   R+IEKI + + A RI  + 
Sbjct: 239 KEIYATGKGSFKIRAKISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGIL 298

Query: 300 DIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           D+ D S   +   ++     +  P+ +M++++  + +E  F +N   L     P+ + + 
Sbjct: 299 DVTDLSDRKNGLKLVIGIKPNFSPNEVMDNLYRHTPLEESFSVNSVALID-GKPKTLGML 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL---LIAYLNIDEIIAIIRNEDKPKP 415
            +LK ++ HR  V+ RRS F +    +R+ ++ GL   L+       II       + + 
Sbjct: 358 DMLKVFIDHRVCVITRRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARK 417

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++   ++T +Q + IL++RL  L KL   +++SE + L    + ++ +L+   +    +
Sbjct: 418 NLMKCLNVTRDQAEYILDIRLNMLTKLSTIKLQSEQEELRKTTQDLEEILSDPNKIDAIL 477

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E+++V +            +   +  + D              T+ ++N       + 
Sbjct: 478 IDELKKVAQRLPSPRRTILESSVKSKKQKTDYPRQVVLTTNGFIFTIEVNNDLISELSQP 537

Query: 536 HSVDLSALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            + D++     E    +K ++      RI  L++ GK        L          +  +
Sbjct: 538 ETFDMTFNTHSEPLRVVKSSIVCGVRSRIGALTSAGKVIPFTPIGLPVLDSGFVTAKSFL 597

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            L ++++ V  F       L + +S G    V  +     T +    + +S+ +++    
Sbjct: 598 GLENDEEAVLLFELHQKESLAIATSSGIVKRVTPAIWPDRTER---VITLSAGDRVVGAA 654

Query: 655 KVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF---KICEG 708
           +      +   +     LL +S   +   +R  +GV   + KD     VI F   +  + 
Sbjct: 655 RGVSSCGYFVFITAKGNLLHYSAGLVNPQNRPARGVAGVTLKDDD-DRVISFGYTEDVDR 713

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              +  + R      +        R   G    K   
Sbjct: 714 ANVLTVSKRMTTSRLSSYQTR--GRATRGVQCHKFLK 748


>gi|331090928|ref|ZP_08339770.1| hypothetical protein HMPREF9477_00413 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405150|gb|EGG84686.1| hypothetical protein HMPREF9477_00413 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 746

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 208/762 (27%), Positives = 374/762 (49%), Gaps = 51/762 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MQDSQLIRTEYSEVMKKSYIDYAMSVIVSRALPDVRDGLKPVQRRTLYDMYELGIKYDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSARIVG+ +GK HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKSARIVGDTMGKYHPHGDSSIYESLVVMAQDFKKGMALVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TEAR+ ++ +   L  +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TEARLARLTQEAYLSDLDKDIVDFVPNFDETEKEPEVLPVRVPNLLVNGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ E+ +A  A + N  I+ ++L++Y+ GPDFPTG I+V +++ ++  Y  G G  
Sbjct: 181 IPTHNLGEVVDAVKAYMKNNGITTKQLMKYVKGPDFPTGAIVV-NKDDLLSVYETGSGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +  VEE   G   +V++EIPY +  +   + +  +A L+  K+   + DI ++S++
Sbjct: 240 KLRGKVEVEEGKGGKKKLVISEIPYTMIGAGIGKFLNDVASLVETKKTNDITDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +   +      P+ M L  I++  +  
Sbjct: 300 EGIRIVLELKKDTDVENLKNMLYKKTRLEDTFGV-NMLAVADGKPETMGLKKIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------- 419
           + E+  R+    +     + EI +GL+ A   ID II I+R     K V           
Sbjct: 359 QFELATRKYKNLLGKELDKKEIQEGLIKACDVIDLIIEILRGSKSIKDVKACLTNGVTDN 418

Query: 420 -------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                            TE Q  AIL +RL  L  LE   ++ E +  L    + + +LN
Sbjct: 419 ISFKSNISKKMASMLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLKNIARYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I  E+   K+ +       +RRT       A++A  ++  +E++ + V++  
Sbjct: 479 NYDSMAEVIMEELDYYKKTYG-----RKRRTVI---ENAEEAVYEEKKVEEQDVVVLMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            G+ RS+ + + D +       +     +    T +I + +  GK + +   ++  G+  
Sbjct: 531 FGYTRSIDTATYDRNKESADSENK--HIIFCKNTGKICMFTNTGKMHQVKVLDIPFGKFR 588

Query: 587 GE--AIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKT 640
            +   +  L + +  ++ +  ++ D       K+L  +  G    V+ +E +  +++  T
Sbjct: 589 DKGTPVDNLSNYDSAEENI-IYICDEEQFRMGKMLFATKYGMIKKVDGAEFV-VSKRTIT 646

Query: 641 FLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
             K+  E+++  +  V  +  + +       L F  +++ E  +G  GVR    +   I 
Sbjct: 647 ATKLQEEDEVVSIQPVNENQNIVLQTGGGYFLRFLAEEVAEKKKGAIGVRGIKLQKTDIL 706

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           + +     EG            +        L KR G+G+  
Sbjct: 707 ENVYL-FEEGTEIKVP---YREKEVTLNRLKLAKRDGMGTKT 744


>gi|167746703|ref|ZP_02418830.1| hypothetical protein ANACAC_01414 [Anaerostipes caccae DSM 14662]
 gi|167653663|gb|EDR97792.1| hypothetical protein ANACAC_01414 [Anaerostipes caccae DSM 14662]
          Length = 753

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 206/767 (26%), Positives = 359/767 (46%), Gaps = 57/767 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E++        +++ Y+ YA+S I  RA+PD+RDG KPV RR+++AM E+ L      
Sbjct: 1   MAEHIIRAEFSEVMQKSYIDYAMSVICARALPDIRDGLKPVQRRVLYAMDELNLRHDRPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y+SLV + Q F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYESLVVMEQEFKKGMPLVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ +  + + L  +D++ VDF   ++E + EP V P + PNLL NG  GIAVGM TSI
Sbjct: 121 EARLKKFTQEVYLADLDKNVVDFISNFDETEKEPEVLPVRVPNLLINGAEGIAVGMTTSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A +A +++  ++ E LL YI GPDFPTGG +V +++ I   Y  G G  +
Sbjct: 181 PPHNLGEVVDAMIAYLEDESVANEDLLTYIQGPDFPTGG-LVVNKKDIKTIYTEGSGKLK 239

Query: 252 VRARWCVEEVGRGSW--CIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +   E   +      +V+TEIPY +      + +  +  L+ +K+   + DI +ES+
Sbjct: 240 LRGKVVFEPGKKRGEKDKLVITEIPYTMIGANIGKFLSDVVNLVESKKTTDIADISNESS 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    +  D + L   ++  + +E  F +NM  +     P+ + L  I+     
Sbjct: 300 KEGIRIVLELKKGTDIERLKNLLYKKTKLEDTFGVNMLAIVD-GRPETLSLRDIIAHHTE 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------- 415
               ++ R+    +  +  + E+ +GL+ A   ID II I+R     K            
Sbjct: 359 FHYGLVKRKYQTLLSKLYDQREVKEGLIKACDMIDLIIEILRGSKNLKEAKACLTKGEVG 418

Query: 416 ----------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                     +   + S TE Q +AIL+LRL  L  LE   ++ E + ++A   + + +L
Sbjct: 419 NIRFKSSESMIEACKLSFTEKQAEAILDLRLGKLIGLEILALREEYEEIVANIAEYEDIL 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           ++       +  ++ ++K+ +        RRT   + + A            +   V   
Sbjct: 479 HNPVSMQRVMKQDLMKIKKEY-----QRERRTVVEDGAEAVF-----EEEPLKEEQVYFV 528

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
              +  +                   K  +    TD+I + +  G  + +   ++     
Sbjct: 529 MDRFGYAKTFDKATYQRNQENASRDYKYIVPCMNTDKICIFTDTGVMHQIKVLDIPAGKY 588

Query: 584 RGHGEAIQLLIDLN-HNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKT 640
           +  G  I  L + +  ++ I+     ++     L   + +G   IV  +E    T++  +
Sbjct: 589 KDKGTPIDNLGNYDSSDEAIIAVLAAEAMTHDSLFFATEQGMLKIVSGTEFQ-VTKRTVS 647

Query: 641 FLKVSSEEKMKLVVK-------VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
             K+S  + +  V         +  D V +  +    L FS++++PE  +G  GVR    
Sbjct: 648 ATKLSDGDALLSVKPLKTEGGLIKPDMVILETKEGVFLRFSLEEVPEKKKGAVGVRGIKL 707

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
               I         +G+T +D       +  +     L KR   GS 
Sbjct: 708 NKDDILLHTYLMEADGITSMD----YKGKRLDFNKLKLAKRDTKGSK 750


>gi|28493458|ref|NP_787619.1| DNA topoisomerase IV subunit A [Tropheryma whipplei str. Twist]
 gi|28476499|gb|AAO44588.1| DNA gyrase subunit A-like protein [Tropheryma whipplei str. Twist]
          Length = 824

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 211/743 (28%), Positives = 364/743 (48%), Gaps = 20/743 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E +  V L   +++ +L YA S I  RA+PD RDG KPV RRI++ MS MGL    A  
Sbjct: 18  NEKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMGLSPDKAHV 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+ GEV+GKLHPHGD ++YD+LVR++Q F  R PLI G GNFG++  D  AA RYTE
Sbjct: 78  KCARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSL-NDGPAASRYTE 136

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ A  ++  ++ + VDF   Y+ + ++P V P+  PNL+ NG+SGIAVGMATSIP 
Sbjct: 137 ARLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSIPP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+QE   AA+ L+ N + S+E++++ + GPDFPTG IIV  +E+  E Y  G+G F++R
Sbjct: 197 HNLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIV-GKEAFKEIYATGKGSFKIR 255

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIV 312
           A+  ++  G G   +V+TE+PY V   R+IEKI + + A RI  + D+ D S   +   +
Sbjct: 256 AKISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSDRKNGLKL 315

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +     +  P+ +M++++  + +E  F +N   L     P+ + +  +LK ++ HR  V+
Sbjct: 316 VIGIKPNFSPNEVMDNLYRHTPLEESFSVNSVALID-GKPKTLGMLDMLKVFIDHRVCVI 374

Query: 373 FRRSSFRMQAIDRRVEILKGL---LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
            RRS F +    +R+ ++ GL   L+       II       + +  ++   ++T +Q +
Sbjct: 375 TRRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMKCLNVTRDQAE 434

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL++RL  L KL   +++SE + L    + ++ +L+   +    +  E+++V +     
Sbjct: 435 YILDIRLNMLTKLSTIKLQSEQEELRKTTQDLEEILSDPNKIDAILIDELKKVAQRLPSP 494

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG- 548
                  +   +  + D              T+ ++N       +  + D++     E  
Sbjct: 495 RRTILESSVKSKKQKTDYPRQVVLTTNGFIFTIEVNNDLISELSQPETFDMAFNTHSEPL 554

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
             +K ++      RI  L++ GK        L          +  + L ++++ V  F  
Sbjct: 555 RVVKSSIVCGVRSRIGALTSAGKVIPFTPIGLPVLDSGFVTAKSFLGLENDEEAVLLFEL 614

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVVGE 666
                L + +S G    V  +     T +    + +S+ +++    +      +   +  
Sbjct: 615 HQKESLAIATSSGIVKRVTPAIWPDRTER---VITLSAGDRVVGAARGVSSCGYFVFITA 671

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF---KICEGLTWIDSAGRSYNRS 722
              LL +S   +   +R  +GV   + KD     VI F   +  +    +  + R     
Sbjct: 672 KGNLLHYSAGLVNPQNRPARGVAGVTLKDDD-DRVISFGYTEDVDRANVLTVSKRMTTSR 730

Query: 723 ENDLLGWLGKRGGVGSLVPKGFP 745
            +        R   G    K   
Sbjct: 731 LSSYQTR--GRATRGVQCHKFLK 751


>gi|118497092|ref|YP_898142.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           novicida U112]
 gi|194323389|ref|ZP_03057166.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|118422998|gb|ABK89388.1| DNA topoisomerase IV subunit A [Francisella novicida U112]
 gi|194322244|gb|EDX19725.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           novicida FTE]
          Length = 742

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 252/735 (34%), Positives = 407/735 (55%), Gaps = 18/735 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKN 317
                   +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES +    +IVL+   
Sbjct: 252 ----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 TKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++   F        RR+
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILTDFGD-----SRRS 482

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 +A +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 483 KIIVAEKA-QALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISIAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV-VGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    DH  + +    +++I    
Sbjct: 602 SESGKAFVIPAEDLITNKITGK---NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRGG 735
               + +GKG  +           I          +++  R     S+N    +  K  G
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTLNAGKRFIRIDSKNIETYYSDKPSG 718

Query: 736 VGSLVPKGFPRSGKF 750
            G L+P+GF +  K 
Sbjct: 719 GGVLLPQGFRKITKI 733


>gi|154488789|ref|ZP_02029638.1| hypothetical protein BIFADO_02096 [Bifidobacterium adolescentis
           L2-32]
 gi|154082926|gb|EDN81971.1| hypothetical protein BIFADO_02096 [Bifidobacterium adolescentis
           L2-32]
          Length = 891

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/848 (26%), Positives = 362/848 (42%), Gaps = 113/848 (13%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L+ 
Sbjct: 13  DPRTVKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMSLNP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM   A  +   + E+ VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARMAPAALGMNADIAENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P GG ++  R+ I E+Y  GRG
Sbjct: 192 TNMATHNLGEVVAAAKHLMRHPDATLEELMRYVPGPDWPGGG-VIVGRKGIREAYETGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +    D +   
Sbjct: 251 ALTTRSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLDGISGAIDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP+ ++  +F  + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 311 NGTRLVIEIKTGFDPNAVLAQLFKHTPLQDNFTINNVALV-NGRPHTMGLKEMLQVWVDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLT 424
           RR V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D  +         F L 
Sbjct: 370 RRVVIRRRSEFRRKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIAVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   ++++E D+L    E+++ +L S +     +  E+ +   
Sbjct: 430 EIQAQYILDLRLRRLTKMSRIELEAERDDLKRRIEELERILASDEALDGVVIDEMDDAVA 489

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAM------------------------------ 514
            +        RRT   +       T   A                               
Sbjct: 490 KYGTP-----RRTVLLDEDEEGNLTPVVAHGDDGVSANAMAAARAAATVSSAAADVAAAA 544

Query: 515 -----------------IEKEPITVVISNRGWIRSLKSHSVDLSALH-----FKEGDSLK 552
                            I+ EP  V++S  G I      +V+            + D + 
Sbjct: 545 KAAKKAGDENATASALQIDDEPCAVMLSATGLIARTSEDAVERWENRSASDGRAKDDQIV 604

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHN 599
                 T     L+++ G+        L      G               +    D    
Sbjct: 605 SMFRTSTRSSYGLVTSAGRLVLAHVVELPKVSADGPLSVTGGVKAEELLGMTENTDPIRG 664

Query: 600 QDIVTAF---VYDSTCKLL---VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           + ++ A      D   +L+   + +  G             T    + + +  ++++   
Sbjct: 665 ERVIAAIDMPSTDDGGQLVPLALGTRNGVVKRWNRE--SPTTMDSWSVIDLKDDDEVLAA 722

Query: 654 VKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
            +    D +  V  +  LL F    +    R   G+      +G             +TW
Sbjct: 723 AEARDEDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIRLAEGCSVAAFAVVPDGKVTW 782

Query: 712 --------------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                                     +        +     +     RG  G    +   
Sbjct: 783 NYEEGENGLFSASGAVVLTVAGDSEALPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFLK 842

Query: 746 RSGKFLSS 753
                + +
Sbjct: 843 GQDTLILA 850


>gi|88809359|ref|ZP_01124867.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7805]
 gi|88786578|gb|EAR17737.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7805]
          Length = 821

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/767 (28%), Positives = 385/767 (50%), Gaps = 46/767 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   +L  +  D VDF + ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPIAHEGLLDEIGNDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL+  P++S +KLL+ I GPDFPTGG ++     + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALVREPDLSNDKLLKLIPGPDFPTGGEVLLG-SGVRDTYLRGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    VEEV  G        ++VTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHVEEVQLGKGRHKRNAVIVTELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DPD +++ +   + +++ F   M  L  G+  Q + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPDAVLKDLQRRTSLQSNFGAIMLALVDGQP-QQLSLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            +R   L RR++  ++  + R+E+++GL+ A  ++  +IA+I+            +    
Sbjct: 359 DYRELTLIRRTTHALRKAEDRLEVVEGLITALQSLQRVIAMIQEAQDAAAARASLMVHLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE   ++ E + L A+++++  LL++  Q  + +  E+R++
Sbjct: 419 LSERQADAVLAMPLRRLTGLERESLRQEAEELRAQRQRLKLLLDNRDQLLDALTKELRQL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-------------KEPITVVISNRGW 529
           K+ F+       RRT   E      A                          ++I + G 
Sbjct: 479 KKRFATP-----RRTRLVEGGDHLLAERAANQRPNAELQRRQALDALPPDSRILIQDDGQ 533

Query: 530 IRSLKSHSVDLSALHFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLPA-GNLLSG 583
           ++ +    +    L+       E    ++ L      ++L ++  G+   +         
Sbjct: 534 VKVISPQLMGRLHLNEPTALGDEPSPARVILPIKPVAKLLAVTASGRVALIRWEFAGQQP 593

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEIIANTRK 637
                 +   +  +    ++     D+         L ++SS G    +   E++  + +
Sbjct: 594 GSLERFLPTALQGDPVVSVLQLPDADADSNKAAVSSLGLLSSDGRFKRLPMQELLDLSGR 653

Query: 638 GKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS--IDQIPEMSR-GKG-VRLQSY 692
             + +K+    ++K  V    G  ++++ +  ++L      D +P M +  +G V ++  
Sbjct: 654 AASVVKLKEGVELKTAVICREGGTLSLISDLGRVLPLPVTEDNLPLMGKLAQGPVTMRLL 713

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
               +   +     +    +  +     +  +     L +RG +G +
Sbjct: 714 PGETLIAAVATDPEQQDPLLLFSRHGRIKPLSLDTVRLCQRGNLGVI 760


>gi|188024071|ref|ZP_02996816.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|195867813|ref|ZP_03079813.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225551406|ref|ZP_03772352.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|188019110|gb|EDU57150.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|195660510|gb|EDX53767.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225379221|gb|EEH01586.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 852

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 215/742 (28%), Positives = 381/742 (51%), Gaps = 27/742 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG I         +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVH-RTPTLVSLSTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D  +         F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-- 545
                 R+   F E  +A     +  MIEK+ + +VIS  G+I+++   S + S      
Sbjct: 480 ----YQRKTKLFDEFIKA--EVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 546 -KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +   R     E +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYDS-----TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +V +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 713 DSAGRSYNRSENDLLGWLGKRG 734
               +  N+  +     L KR 
Sbjct: 714 LFLDQG-NKCFSISELKLSKRA 734


>gi|171920938|ref|ZP_02932082.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188024134|ref|ZP_02996867.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209554590|ref|YP_002284910.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|171903170|gb|EDT49459.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188019193|gb|EDU57233.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209542091|gb|ACI60320.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 852

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 215/742 (28%), Positives = 381/742 (51%), Gaps = 27/742 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG I         +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVH-RTPTLVSLSTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D  +         F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-- 545
                 R+   F E  +A     +  MIEK+ + +VIS  G+I+++   S + S      
Sbjct: 480 ----YQRKTKLFDEFIKA--EVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 546 -KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +   R     E +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYDS-----TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +V +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 713 DSAGRSYNRSENDLLGWLGKRG 734
               +  N+  +     L KR 
Sbjct: 714 LFLDQG-NKCFSISELKLSKRA 734


>gi|185179130|ref|ZP_02964849.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|184208968|gb|EDU06011.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
          Length = 852

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 215/742 (28%), Positives = 381/742 (51%), Gaps = 27/742 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG I         +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEVKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVH-RTPTLVSLSTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D  +         F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-- 545
                 R+   F E  +A     +  MIEK+ + +VIS  G+I+++   S + S      
Sbjct: 480 ----YQRKTKLFDEFIKA--EVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 546 -KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +   R     E +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYDS-----TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +V +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 713 DSAGRSYNRSENDLLGWLGKRG 734
               +  N+  +     L KR 
Sbjct: 714 LFLDQG-NKCFSISELKLSKRA 734


>gi|325271257|ref|ZP_08137800.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
 gi|324103607|gb|EGC00911.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
          Length = 607

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 250/618 (40%), Positives = 378/618 (61%), Gaps = 14/618 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  V +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +IE+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  IL 
Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTDLESSYRVNINIIGLDGRPQLKNLRTILV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR ED PK  +++RF 
Sbjct: 356 EWLEFRTHTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEDHPKQALIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E + A   +  + M   EP+TVV+S +GWIR  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVERAEAKALSENELM-PTEPVTVVLSEKGWIRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    +L+ + G++Y+L A +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSK 620
               + +     +V S  
Sbjct: 590 DCVLLPEDDALYVVASDA 607


>gi|188518293|ref|ZP_03003816.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188998204|gb|EDU67301.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
          Length = 852

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 215/742 (28%), Positives = 381/742 (51%), Gaps = 27/742 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG I         +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEVKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVH-RTPTLVSLLTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D  +         F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-- 545
                 R+   F E  +A     +  MIEK+ + +VIS  G+I+++   S + S      
Sbjct: 480 ----YQRKTKLFDEFIKA--EVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 546 -KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +   R     E +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYDS-----TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +V +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 713 DSAGRSYNRSENDLLGWLGKRG 734
               +  N+  +     L KR 
Sbjct: 714 LFLDQG-NKCFSISELKLSKRA 734


>gi|225550780|ref|ZP_03771729.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379934|gb|EEH02296.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 852

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 215/742 (28%), Positives = 381/742 (51%), Gaps = 27/742 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG I         +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVH-RTPTLVSLLTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D  +         F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-- 545
                 R+   F E  +A     +  MIEK+ + +VIS  G+I+++   S + S      
Sbjct: 480 ----YQRKTKLFDEFIKA--EVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 546 -KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +   R     E +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYDS-----TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +V +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 713 DSAGRSYNRSENDLLGWLGKRG 734
               +  N+  +     L KR 
Sbjct: 714 LFLDQG-NKCFSISELKLSKRA 734


>gi|188524342|ref|ZP_03004374.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198273817|ref|ZP_03206351.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|195660114|gb|EDX53494.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198249572|gb|EDY74354.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
          Length = 852

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 214/742 (28%), Positives = 380/742 (51%), Gaps = 27/742 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG I         +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVH-RTPTLVSLSTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D  +         F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-- 545
                 R+   F E  +A     +  MIEK+ + +VIS  G+I+++   S + S      
Sbjct: 480 ----YQRKTKLFDEFIKA--EVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 546 -KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +   R     E +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYDS-----TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +  +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYACNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 713 DSAGRSYNRSENDLLGWLGKRG 734
               +  N+  +     L KR 
Sbjct: 714 LFLDQG-NKCFSISELKLSKRA 734


>gi|116074280|ref|ZP_01471542.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9916]
 gi|116069585|gb|EAU75337.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9916]
          Length = 824

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/785 (28%), Positives = 383/785 (48%), Gaps = 53/785 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVEPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVR  Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRQVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++   +L  + +D VDF   ++    EP V P++ P LL NG +GIAVGMATS
Sbjct: 121 TETRLAPISHQALLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCAGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL+  P++S +KLL  I GPDFPTGG ++     + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALVRKPDLSDDKLLALIPGPDFPTGGEVLLG-SGVRDTYLRGRGSI 239

Query: 251 RVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EE+  G        +V+TE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DP+ ++  +   + +++ F   +  L  G+  Q + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPEKVLVDLQRRTSLQSNFGAILLALVNGQP-QQLSLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            +R   + RR++  ++  + R+E+++GL+ A  ++  +IA+I+        +  ++    
Sbjct: 359 EYRELTMIRRTTHALRKTEDRLEVVEGLITALDSLQRVIAMIQEAKDAASARASLMVHLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q DA+L + LR L  LE+  +++E   L  E+E++  LL    Q  + +  E++++
Sbjct: 419 LTERQADAVLAMPLRRLTGLEQESLRNEAQELRLERERLQLLLQERDQLLDAMVQELKQL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-------------KEPITVVISNRGW 529
           K+ F+       RRT   E      A                          ++I N G 
Sbjct: 479 KKRFATP-----RRTRLIEGGDHLLAEKAANQRPNAELQRRQALGALPSDGRLLIQNDGQ 533

Query: 530 IRSLKSHSVDLSALHF-----KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           ++ +    +    L+       E    ++ L      R+L+L+  G+   L        +
Sbjct: 534 VKVVSPQLLGRLHLNEAVGLGDEPSPAQLILPIQPAPRLLVLTASGRMALLR-WEFAGQQ 592

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCK--------LLVVSSKGNAFIVEESEIIANTR 636
             G    L   L     +V+     +           L ++S+ G    +   ++   + 
Sbjct: 593 PGGLERFLPTALE-GDPVVSLLRLPAADDASTNTRLSLGLLSTDGRFKRLPLDDVQELSG 651

Query: 637 KGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSY 692
           +  T LK+     +   V    G  V ++ +  ++L   +  D +P M +  +G      
Sbjct: 652 RAATILKLKDGVSLLSAVICEDGGTVTLISDIGRVLCLPVQDDNLPLMGKLAQGPMTMRM 711

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP----KGFPRSG 748
             G        +   G   +  +     R  +       KRG +G +      KG   + 
Sbjct: 712 LPGETLVGAVSQSAGGENLLVGSRNGALRRLSLSSLRRCKRGDLGEMAITLQGKGND-AD 770

Query: 749 KFLSS 753
           + +S+
Sbjct: 771 RLVSA 775


>gi|188518298|ref|ZP_03003819.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195867504|ref|ZP_03079507.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225551137|ref|ZP_03772083.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|188998129|gb|EDU67226.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195660748|gb|EDX54002.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225378952|gb|EEH01317.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 852

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 215/742 (28%), Positives = 381/742 (51%), Gaps = 27/742 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG I         +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEVKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVH-RTPTLVSLLTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D  +         F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-- 545
                 R+   F E  +A     +  MIEK+ + +VIS  G+I+++   S + S      
Sbjct: 480 ----YQRKTKLFDEFIKA--EVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 546 -KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +   R     E +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYDS-----TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +V +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 713 DSAGRSYNRSENDLLGWLGKRG 734
               +  N+  +     L KR 
Sbjct: 714 LFLDQG-NKCFSISELKLSKRA 734


>gi|154482536|ref|ZP_02024984.1| hypothetical protein EUBVEN_00203 [Eubacterium ventriosum ATCC
           27560]
 gi|149736561|gb|EDM52447.1| hypothetical protein EUBVEN_00203 [Eubacterium ventriosum ATCC
           27560]
          Length = 801

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 217/814 (26%), Positives = 373/814 (45%), Gaps = 104/814 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ YA+S I  RA+PD RDG KPV RR+++AM ++GL++    
Sbjct: 1   MAEQIIKTEYSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYAMDQLGLNYDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV LAQ F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVLAQDFKKGMALVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EA++ +  + + L  +D+D VDF   ++E + EP V P + PN+L NG  GIAVGMAT+I
Sbjct: 121 EAKLKKFTQDVYLADLDKDVVDFVPNFDETEKEPSVLPVRVPNILVNGAEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A +DN  I+ E+LL+ + GPDFPTGGI+  ++  + + Y  G G  +
Sbjct: 181 PTHNLGEVVDAVIAYMDNNNITTEELLQIMPGPDFPTGGIVA-NKSDLKDIYENGTGKLK 239

Query: 252 VRARWCVEEVG-RGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R +   E+   R    +V+TEIPY +  +   + I  + +L+  K+   + DI + S E
Sbjct: 240 LRGKLEFEKGKGREKDKLVITEIPYTMIGAGIGKFISDVIDLVETKKTTDIVDISNGSDE 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +NM  ++    P+VM L  I+K  +  
Sbjct: 300 NGIRIVLELKKGADVEKLKNILYKKTKLEDTFGVNMLAIAD-GRPEVMGLKSIIKYNVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----- 422
           + E+  R+ +  +     + EI +GL+ A   ID II IIR     K V           
Sbjct: 359 QYELAQRKYTTLLNKALEQKEIKEGLIKATNIIDLIIEIIRGSQSQKQVKACLVHGKTDD 418

Query: 423 ----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                            TE Q  AIL LRL  L  LE   ++ E + L+ +  + + +L 
Sbjct: 419 IKFKNPESEILAGNLSFTERQAQAILELRLSKLIGLEILALQKEYEELMDKIGQYEDILE 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           + K     I  +++ +K+ ++        R T  E     +A   +    ++ +  V   
Sbjct: 479 NRKTMTKTIKKDLKAIKKEYALP------RKTLIE--DGKEAVFDENAFVEQEVVFVQDK 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            G+ + L   + D +     + +          TD I + + +G  + +    + + +  
Sbjct: 531 FGYSKLLDPAAFDRNIESVTKENKYYF--RCMNTDSICIFTDNGNVHQIKVSAIPTKKVR 588

Query: 587 GEAIQLL---IDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            + I +       +  + IVT   +D     KLL  +  G   +V+ +E   N +     
Sbjct: 589 EKGIPIDNLGNYSSQGESIVTLVSFDMIKDKKLLFTTKNGMIKLVDGNEFETNRKTML-A 647

Query: 642 LKVSSEEKMKLVVKV-------TGDHV--------------------------------- 661
            K+  ++++  V          + + V                                 
Sbjct: 648 TKLGKDDEVVSVKITRVSNKQISEEQVEEMPVMLTGGSDDFEPLDFEQMELFDTTASMDV 707

Query: 662 -------------AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKIC 706
                         +  E    L F + ++PEM +   GV+     DG  +S V      
Sbjct: 708 GQEQELQYTREILVLQTEEGIFLRFPLKEVPEMKKATLGVKGIKLNDGDFVSKVYLLDTG 767

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           +      +      ++ +     +GKRG  G  V
Sbjct: 768 DNEVVKCN-----GKTVDLRKLKIGKRGTKGVKV 796


>gi|311742662|ref|ZP_07716471.1| DNA topoisomerase IV subunit A [Aeromicrobium marinum DSM 15272]
 gi|311314290|gb|EFQ84198.1| DNA topoisomerase IV subunit A [Aeromicrobium marinum DSM 15272]
          Length = 822

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 218/786 (27%), Positives = 361/786 (45%), Gaps = 53/786 (6%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     +      +E++    +R  +   +L Y+ S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MARGTRTEPVEEFDEHIVDTDIREEMRASFLEYSYSVIYSRALPDARDGLKPVQRRILFM 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MGL       KSAR VG+V+G+LHPHGD ++YD+LVRL QP+  R PLI G GNFG+
Sbjct: 61  MDDMGLRPDRGHVKSARPVGDVMGRLHPHGDSAIYDALVRLVQPWSMRVPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            D D  AA RYTE RM   A+ +   +DED VDFR  Y+  ++EPVV P+  PNLL NG 
Sbjct: 121 PD-DPPAAMRYTECRMDPAAQAMTASIDEDTVDFRPNYDGRETEPVVLPASLPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+I  HN+ E+ +A   LI +PE  ++ L+ +I GPD PTGG IV   + + 
Sbjct: 180 SGIAVGMATNIAPHNLVEVVQALRHLIGHPEADLDDLMRFIPGPDLPTGGKIV-GLDGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  G G F++RA   VE+VGR    IV++E+PY V   ++IE + +L+ +K++  + D
Sbjct: 239 DAYATGNGSFKMRATARVEQVGR-RKGIVISELPYNVGPEKVIEAVKKLVQSKKLQGIAD 297

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +++ +       ++        P+ ++E ++  + MET F +N   L     P+ + L  
Sbjct: 298 LKNLTDRHSGLSIVIEVKNGFVPEAILEQLYRFTPMETSFGINAVALVD-GQPRTLGLRQ 356

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L  +L HR +V+ RRS+FR      R+ +L+GLL+A ++IDE+I +IR+ +        
Sbjct: 357 MLDVYLEHRYDVVRRRSTFRRAMAADRLHLLEGLLLALVDIDEVIQLIRSSENRGEAKDR 416

Query: 420 ---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               F L+E Q + ILNL L  L + +   ++SE++ L    E +D++L         + 
Sbjct: 417 LRSVFDLSEPQAEYILNLTLGRLTRYDRIVVESEMEELRRTIEALDAILGDETVLRGVVG 476

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ E+   F        RRT   E +           +  +P   ++S+ G +      
Sbjct: 477 DELAEMAATFGTP-----RRTILLESAGQTVTAATPVEVADDPCWALLSSTGLLARTSDD 531

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
               +     + D +  A+       I +++  G+   +   +L +      A  L   +
Sbjct: 532 RPIGTDGGRAKHDVIVSAVRTTARGEIGVVTAGGRVRRIGVLDLPALPATAGAPSLQGGV 591

Query: 597 NHNQDIV------TAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
             ++ +           +      L + + +G    V+   +    R     + ++  + 
Sbjct: 592 PVSEVVQLDDRPLALMTFAEDVPGLALGTRQGVVKRVKPDHLS--NRDEWDLIGLADGDA 649

Query: 650 MKLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQ----------SYKDGG- 696
           +   V      + +A V  + +LL F  D +           Q              G  
Sbjct: 650 VVGAVPLVTGTEQLAFVTSDAQLLHFGADAVRP---------QGRGGGGVAGVKLAPGAS 700

Query: 697 ISDVICFKICEGLTWIDSAGR---------SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           +              +  +G             +     L     R   G    +     
Sbjct: 701 VVAFGAVAAPGTAHVVTVSGSASALPGTQAGSAKVSPFELYPPKGRATGGVRCHRLLKGE 760

Query: 748 GKFLSS 753
              + +
Sbjct: 761 DAVILA 766


>gi|291523172|emb|CBK81465.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Coprococcus catus GD/7]
          Length = 745

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 211/761 (27%), Positives = 366/761 (48%), Gaps = 51/761 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++E +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+ + +   +
Sbjct: 1   MQEQIIRTDYAEVMQKSYVDYAMSVIISRALPDIRDGLKPVQRRTLYDMYELAIRYDKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMPLVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ +V + + L  +D+D VDF   ++E + EP V P + PN L NG+ GIAVGM TS 
Sbjct: 121 EARLQKVTQEVFLADLDKDVVDFMPNFDETEKEPTVLPVRLPNFLVNGSDGIAVGMVTST 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A + N +++   L++YI GPDFPTGGI+  +++ ++  Y  G G  +
Sbjct: 181 PPHNLGEVIDAVKAYMKNDKLTTADLMQYIQGPDFPTGGIVT-NKDELLNIYETGSGKIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R R  VE+   G   +V+TEIPY +      + +  +  L+ +K+   + DI ++S+++
Sbjct: 240 LRGRVEVEQDKGGKLRLVITEIPYTMIGANIGKFLNDVYALVESKKTTDIIDISNQSSKE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  D D L+  ++  + +E  F +NM  ++    P+ + L  I++ +L  +
Sbjct: 300 GIRIVLELKKQTDVDNLLALLYKKTRLEDTFSVNMLAIAD-GRPETLGLKSIIEYFLDFQ 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF------- 421
            ++  R+    +     + EI +GL+ A   ID II I+R     K              
Sbjct: 359 YDLTTRKYQKLLAKELEKQEIQEGLMRATDIIDLIIEILRGSKNIKQAKACLMTGTTEGI 418

Query: 422 --------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                           TE Q  AIL +RL  L  LE   +  + D  L        +L +
Sbjct: 419 RFKSKASERAASALDFTERQATAILEMRLYKLIGLEMDALLKDHDATLKNIASYKDILEN 478

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            K     I+ ++  +K+ ++        R T  E  RA  A  ++   E   +  +I   
Sbjct: 479 HKSMSRVISHDLDMIKKTYATP------RKTSIENVRA--AVYEEKKAEAMEVVALIDRF 530

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           G+ +++   + + +       +     +    TD+  + +  G+ + +   ++  GR   
Sbjct: 531 GYAKTIDKATFERNKEAALSENK--YVIDCMNTDKACIFTDTGRLHLIKITDMPFGRFRD 588

Query: 588 EAIQLLIDLNHN---QDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           ++I L    N++   ++I+      S     LL V+  G   +V+ SE    +++     
Sbjct: 589 KSIPLDNLGNYDSSGENIIHICSLASIHDAMLLFVTKTGMLKLVKGSEFD-VSKRTVAAT 647

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           K++  + +  +      + + +  EN   + F +  IPEM +   GVR  S   G     
Sbjct: 648 KLADGDNIITICIADNFNQLVLQTENGYFIRFPMMNIPEMKKTAIGVRGISLGSGDSVKA 707

Query: 701 I-CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                  +  T I        +        L  RGG G+ V
Sbjct: 708 AYPLDSSQECTII-----HNEKELLLNKLKLVNRGGKGTKV 743


>gi|229817461|ref|ZP_04447743.1| hypothetical protein BIFANG_02724 [Bifidobacterium angulatum DSM
           20098]
 gi|229785250|gb|EEP21364.1| hypothetical protein BIFANG_02724 [Bifidobacterium angulatum DSM
           20098]
          Length = 897

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 218/849 (25%), Positives = 352/849 (41%), Gaps = 109/849 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRI++ M +M L+ 
Sbjct: 13  DPRTVKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLNP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+PTGG+I+  R+ I E+Y  GRG
Sbjct: 192 TNLATHNLGEVVNAAKYLMAHPDATLEELMRYVPGPDWPTGGMII-GRDGIREAYASGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               RA   +E V      IVVTE+PY V   +++E+I+E +   ++  +    D S   
Sbjct: 251 TLSTRATTHIEHVTARKQAIVVTELPYMVGPEKVLERISEGVKNHKLEGISGAIDLSDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP  ++  +   + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 311 NGTRLVIELKTGFDPHAVLVQLLKHTPLQDNFAMNNVALV-NGRPHTMGLKEMLQVWIDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLL---IAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           RR V+ RRS FR      R+ +++GLL   I    + ++I    N D  K  +++ F L 
Sbjct: 370 RRVVIRRRSEFRRTKALERLHLVEGLLLALIDIDEVIQVIRSSENADAAKTRLMAVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q   IL+LRLR L K+   +++SE D+L    E+++ +L S K     +  E+     
Sbjct: 430 DIQAQYILDLRLRRLTKMSRIELESERDDLHKRIEELERILASDKALDRVVVDEMDGAVA 489

Query: 485 IFS--------KSTDLGRRRTTFCEVSRADKATLQQAMI--------------------- 515
            +          +   G       E      A+  +A+                      
Sbjct: 490 EYGTPRRTVLLDADAEGNLTPVVAEGMTGVSASALEAVKSANTVSSAAADVAAAKKAGEQ 549

Query: 516 ------EKEPITVVISNRGWIRSLKSHSVDLSALH-----FKEGDSLKIALHAHTTDRIL 564
                 E +P TV++S  G I      ++ +             D +       T     
Sbjct: 550 SMALEIEDKPCTVMMSATGLIARATPEALSMFRSRSVSGERATDDQIVSIFRTTTRATYA 609

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQDIVTAFVYDST 611
           L+++ G+       +L                           D    + +VTA   +  
Sbjct: 610 LITSAGRLVLAQVADLPVVPATNTLSLSSGVKADELIGQTESTDPIRGEHVVTAIAMEPV 669

Query: 612 CK-------------------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            K                   L + +  G             T    + + +   +++  
Sbjct: 670 SKKHSDDATDSDTTEPQALPPLAIGTRAGVVKRWNRE--APTTMDSWSVIDLKDGDEIVF 727

Query: 653 VVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE--- 707
                  D +  +  +  LL F    +    R   G+      +G           +   
Sbjct: 728 AAIARDEDRLVFISTDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGCKVAAFNVVAADKVA 787

Query: 708 --------------GLTWIDS---------AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                         G   +                 +     +     R   G    +  
Sbjct: 788 WTYEEGDNGLTSASGAVVLTVAGDSDALPGTENGAAKVTPFEMYPTKGRATGGVRSQRFL 847

Query: 745 PRSGKFLSS 753
                 + +
Sbjct: 848 KGQNTLIFA 856


>gi|208778885|ref|ZP_03246231.1| DNA topoisomerase IV, A subunit [Francisella novicida FTG]
 gi|208744685|gb|EDZ90983.1| DNA topoisomerase IV, A subunit [Francisella novicida FTG]
          Length = 742

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 253/735 (34%), Positives = 406/735 (55%), Gaps = 18/735 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+ NP  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSNPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKN 317
                   +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES +    +IVL+   
Sbjct: 252 ----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 IKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++   F        RR+
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILTDFGD-----SRRS 482

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 +A +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 483 KIIVAEKA-QALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    D  +  V    + +I    
Sbjct: 602 SESGKAFVIPAEDLITNKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRGG 735
               + +GKG  +           I          +++  R     S+N    +  K  G
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTLNAGKRFIRIDSKNIETYYSDKPSG 718

Query: 736 VGSLVPKGFPRSGKF 750
            G L+P+GF +  K 
Sbjct: 719 GGVLLPQGFRKITKI 733


>gi|330723479|gb|AEC45849.1| DNA topoisomerase IV subunit A [Mycoplasma hyorhinis MCLD]
          Length = 888

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 204/744 (27%), Positives = 368/744 (49%), Gaps = 27/744 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            +N+  +    EE +   SL   + ER++ Y+   I++RAIPD+RDG KPV RRI+++M 
Sbjct: 5   DNNMKKN----EEQLIVNSLDSIVSERFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMW 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +GL    AFKKSAR+VG+VIGK HPHGD S+Y++L+R+AQ +    PL+   GN G+ID
Sbjct: 61  MLGLKNDKAFKKSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGNKGSID 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE R+  V  L+L+ +++  V+F   +++ + EPVV P  FPNLL NGT G
Sbjct: 121 DDPAAAMRYTETRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLVNGTKG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IA G AT IP HN+ E+ +A +  + N      K+ + I GPDFPTGGII +++  I E+
Sbjct: 181 IASGFATDIPPHNLAELIDACIEKLKNKATPYSKIRQIIKGPDFPTGGIIYDTK-GIDEA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           +  G+G   + +++ +         I + EIP+ V KS L+++I E+   K+I  + D+ 
Sbjct: 240 FETGQGKVVLVSKYKII-NEPKYKAIEIEEIPFSVVKSELVKQIDEIRFEKKIEGILDVI 298

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D+S      +L    +  + +L++  +   + M+  +    +V      P+++ +  +L 
Sbjct: 299 DQSDRTGISILIELEKEANIELILNYLLQKTQMQISYSY-NSVAIHNYTPKLLSIYKMLD 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----PKPVMV 418
            +L H +E+  +   F ++  ++R+EI+KG L      DE+I IIRN D         +V
Sbjct: 358 YYLNHLKEIKTKEIEFDLKKNNQRLEIVKGFLKVADITDEVIKIIRNSDNSKQGVIEALV 417

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             F  T  Q  AI  +RL  L ++++    +E + L+ +  K+ +LL +  +    +   
Sbjct: 418 QNFDFTLLQATAIAEMRLYRLSRIDQQNYLNEKNTLIDQVAKLTTLLENDLEFNQYLVSI 477

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS--H 536
           ++E+K  F        R+T     +   +   ++ +  +E   V+     + +       
Sbjct: 478 LKEIKTKFG-----RERKTQIINQNFKIEINQEELIKNEESYFVITKQGLYKKMSNKVFE 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID- 595
           S D+S +  KE D         T +++L+ ++ G    +P   +           L ID 
Sbjct: 533 SNDISNISLKEKDYFVFVNKIQTKNKLLIFTSVGNYIFIPLHTIEDATFKATWSDLQIDY 592

Query: 596 -LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKM 650
            L  ++ I++A     +     + +++  G    +   ++  +  +K    +K+  ++++
Sbjct: 593 LLKKDETIISAIEIADFSENQFVCLITKNGMGKRISLKDLEVSRFKKTILAMKIKQDDQL 652

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEG 708
                      +A+     +   +S  ++P       GVR+   K+G   D       + 
Sbjct: 653 IGAKLSDNYQDIALFTNQNRASRYSEIEVPIYGTNTAGVRILKLKEGEYIDHFVLGQSDD 712

Query: 709 LTWIDSAGRSYNRSENDLLGWLGK 732
             ++  A   + R+ +    + G 
Sbjct: 713 -VFVFVAKSGFVRNISLSSIYYGN 735


>gi|319792864|ref|YP_004154504.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
 gi|315595327|gb|ADU36393.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
          Length = 797

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 254/781 (32%), Positives = 400/781 (51%), Gaps = 69/781 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA---- 70
           +    ++L    +  YL YALS +K RA+PD+ DG KPV RRI+++MS MGL FG     
Sbjct: 14  DGDTTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGTNGT 73

Query: 71  ---AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                 KSAR+VG+V+G+ HPH DQ+ YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AA
Sbjct: 74  VGAKPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAA 133

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+ ++  L+L  +DE  VDF   Y+    EP + P++ P  L NG SGIAVG+
Sbjct: 134 AMRYTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVGL 193

Query: 188 ATSIPSHNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           AT IPSHN++EI +A +ALI +  ++S E+L   + GPD+P G  I+     I ++YR G
Sbjct: 194 ATEIPSHNLREIADACVALIKSNGKLSEEELFAIVPGPDYPGGAQIISGASDIADAYRTG 253

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-- 304
           RG  +VRARW +E++ RG W +VV E+P  V   +++E+I E+   K     + +  E  
Sbjct: 254 RGSLKVRARWKIEDLARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSAEQT 313

Query: 305 ------------------SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                                 VR+V  PK   +  +  + ++   + +ET  P+N+ ++
Sbjct: 314 QLKAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQEEFITTLLAQTSLETSSPINLTMV 373

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  +L EW+A R   + +RS  R+  +  R+ IL+G  +  LNIDE+IAI
Sbjct: 374 GIDGKPTQKSLRQMLNEWIAFREITVEKRSRHRLNKVLERIHILEGRQLVLLNIDEVIAI 433

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  + PK  +++RF+L+E Q + IL +RLR L +LE  +I+ EL  L  E++K++ +L 
Sbjct: 434 IRAAEDPKAALIARFNLSERQAEDILEIRLRQLARLEAIKIEQELKGLREEQKKLEDILG 493

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S       +  EI    + F        RRT      +A+K  + +  +  EP+TV++S 
Sbjct: 494 SPATLRRLLIKEIEADAKTFEDP-----RRTLI----QAEKRAVAEVKVVDEPVTVIVSQ 544

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIA--------LHAHTTDRILLLST----DGKAYT 574
           +GW+R+ K  + + +A +                      + D +L+  +      + YT
Sbjct: 545 KGWVRAQKGWASEKAAGNGGAAPEYSFKSGDTLYGAFECRSVDTLLVFGSSKDKSVRVYT 604

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +P  +L   RG G+ +  LI+L+    +   F       +L+ ++ G  FI     +++ 
Sbjct: 605 VPVASLPGARGDGQPVTTLIELDAGTHVTHFFAGPVGASVLLANTGGYGFIATVENMMSR 664

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG----------DHVAVVGENRKLLIFSIDQIPEMSR- 683
            R GK F+ V   E++     V G           HVA      ++L F I ++  + + 
Sbjct: 665 QRGGKAFIDVGEGEQLCRPSLVGGASGAEPMPAATHVACASTGGRILTFDIAELKSLPKG 724

Query: 684 GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVG 737
           G+G+ L        ++    +        I+  GR     +  L         G R   G
Sbjct: 725 GRGLTLIDLEPKDTLAGAAAYTRS---VKIEGIGRGGKERDETLEIRTLNNARGTRARKG 781

Query: 738 S 738
            
Sbjct: 782 K 782


>gi|187931348|ref|YP_001891332.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712257|gb|ACD30554.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 741

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 251/735 (34%), Positives = 403/735 (54%), Gaps = 18/735 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKN 317
                   +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES +    +IVL+   
Sbjct: 252 ----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 IKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++   F        RR+
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILTDFGD-----SRRS 482

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 +A +   ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 483 KIIVAEKA-QVLEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           +   +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NGNIKLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    D  +  V    + +I    
Sbjct: 602 SESGKAFVIPAEDLITNKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRGG 735
               + +GKG  +           I          +++  R     S+N    +  K  G
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTLNAGKRFIRIDSKNIETYYSDKPSG 718

Query: 736 VGSLVPKGFPRSGKF 750
            G L+P+GF +  K 
Sbjct: 719 GGVLLPQGFRKITKI 733


>gi|304372932|ref|YP_003856141.1| Topoisomerase IV subunit A [Mycoplasma hyorhinis HUB-1]
 gi|304309123|gb|ADM21603.1| Topoisomerase IV subunit A [Mycoplasma hyorhinis HUB-1]
          Length = 881

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 203/734 (27%), Positives = 364/734 (49%), Gaps = 23/734 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            EE +   SL   + ER++ Y+   I++RAIPD+RDG KPV RRI+++M  +GL    AF
Sbjct: 4   NEEQLIVNSLDSIVSERFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWMLGLKNDKAF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD S+Y++L+R+AQ +    PL+   GN G+ID D AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGNKGSIDDDPAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+  V  L+L+ +++  V+F   +++ + EPVV P  FPNLL NGT GIA G AT IP
Sbjct: 124 ETRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLVNGTKGIASGFATDIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A +  + N      K+ + I GPDFPTGGII +++  I E++  G+G   +
Sbjct: 184 PHNLAELIDACIEKLKNKATPYSKIRQIIKGPDFPTGGIIYDTK-GIDEAFETGQGKVVL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
            +++ +         I + EIP+ V KS L+++I E+   K+I  + D+ D+S      +
Sbjct: 243 VSKYKII-NEPKYKAIEIEEIPFSVVKSELVKQIDEIRFEKKIEGILDVIDQSDRTGISI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L    +  + +L++  +   + M+  +    +V      P+++ +  +L  +L H +E+ 
Sbjct: 302 LIELEKEANIELILNYLLQKTQMQISYSY-NSVAIHNYTPKLLSIYKMLDYYLDHLKEIK 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----PKPVMVSRFSLTENQV 428
            +   F ++  ++R+EI+KG L      DE+I IIRN D         +V  F  T  Q 
Sbjct: 361 TKEIEFDLKKNNQRLEIVKGFLKVADITDEVIKIIRNSDNSKQGVIEALVQNFDFTLLQA 420

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI  +RL  L ++++    +E + L+ +  K+ +LL +  +    +   ++E+K  F  
Sbjct: 421 TAIAEMRLYRLSRIDQQNYLNEKNTLIDQVAKLTTLLENDLEFNQYLVSILKEIKTKFG- 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS--HSVDLSALHFK 546
                 R+T     +   +   ++ +  +E   V+     + +       S D+S +  K
Sbjct: 480 ----RERKTQIINQNFKIEINQEELIKNEESYFVITKQGLYKKMSNKVFESNDISNISLK 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID--LNHNQDIVT 604
           E D         T +++L+ ++ G    +P   +           L ID  L  ++ I++
Sbjct: 536 EKDYFVFVNKIQTKNKLLIFTSVGNYIFIPLHTIEDATFKATWSDLQIDYLLKKDETIIS 595

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-D 659
           A     +     + +++  G    +   ++  +  +K    +K+  ++++          
Sbjct: 596 AIEIADFSENQFVCLITKNGMGKRISLKDLEVSRFKKTILAMKIKQDDQLIGAKLSDNYQ 655

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            +A+     +   +S  ++P       GVR+   K+G   D       +   ++  A   
Sbjct: 656 DIALFTNQNRASRYSEIEVPIYGTNTAGVRILKLKEGEYIDHFVLGQSDD-VFVFVAKSG 714

Query: 719 YNRSENDLLGWLGK 732
           + R+ +    + G 
Sbjct: 715 FVRNISLSSIYYGN 728


>gi|56707545|ref|YP_169441.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670016|ref|YP_666573.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456614|ref|ZP_03665087.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370068|ref|ZP_04986074.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874363|ref|ZP_05247073.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604037|emb|CAG45029.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320349|emb|CAL08412.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568312|gb|EDN33966.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840362|gb|EET18798.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158699|gb|ADA78090.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 741

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 251/735 (34%), Positives = 404/735 (54%), Gaps = 18/735 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKN 317
                   +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES +    +IVL+   
Sbjct: 252 ----NHSNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 IKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D     + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDSSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++   F        RR+
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILTDFGD-----SRRS 482

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 +A +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 483 KIIVAEKA-QALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAARYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    D  +  V    + +I    
Sbjct: 602 SESGKAFVIPAEDLITNKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRGG 735
               + +GKG  +           I          +++  R     S+N    +  K  G
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTLNAGKRFIRIDSKNIETYYSYKPSG 718

Query: 736 VGSLVPKGFPRSGKF 750
            G L+P+GF +  K 
Sbjct: 719 GGVLLPQGFRKITKI 733


>gi|160938078|ref|ZP_02085435.1| hypothetical protein CLOBOL_02972 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439072|gb|EDP16827.1| hypothetical protein CLOBOL_02972 [Clostridium bolteae ATCC
           BAA-613]
          Length = 744

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 214/762 (28%), Positives = 367/762 (48%), Gaps = 54/762 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        ++  Y+ Y++S I  RAIPD RDG KPV RR+++ M E+ LD     
Sbjct: 1   MAEKILRTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMRELHLDHDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQNFKKGMALVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ + AE + L+ +D+  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSI
Sbjct: 121 EARLEKFAEEVYLKDLDK-TVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A IDNPE++ ++L+E++ GPDFPTGG+I  ++  + + Y  G G  +
Sbjct: 180 PPHNLGEVIDAVQAYIDNPEVTTQELMEFMPGPDFPTGGVIA-NKSELPQIYETGMGKIK 238

Query: 252 VRARWCVE--EVGRGSWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R ++ VE  +       ++++EIPY +     ++ +  +A+L+ +K++  + DI ++S 
Sbjct: 239 LRGKFEVELGKRKADKDKLIISEIPYTMIGAGINKFLVDVADLVESKKLTDVVDISNQSN 298

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    +  D D +   ++  + +E  F +NM  ++    P+ + L GIL+ +L 
Sbjct: 299 KEGIRIVLELRKDADIDKIKNILYKKTKLEDTFGVNMLAIAD-GRPETLNLKGILRNFLN 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------- 412
            + E   R+ +  +Q    + E+ +GL+ A   ID IIAI+R                  
Sbjct: 358 FQYENTERKYNVLLQKEMDKKEVQEGLIAACDCIDLIIAILRGSKNLKDAKACLTTGDVT 417

Query: 413 -------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                         + + TE Q  AIL +RL  L  LE   ++ E    L +  +   +L
Sbjct: 418 NIHFKVPGFEEDAKKLAFTERQASAILEMRLYKLIGLEILALEKEHRETLRKIGEYKKIL 477

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  Q    I  ++  +K  F+       RRT   +   A      ++ +  + +  V+ 
Sbjct: 478 GSRAQMNRVIKEDLAAIKAEFATP-----RRTLIEDGPEA---VYDESAVAVQEMVFVMD 529

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
             G+ + L   + D +             +    TD+I L +  G  Y + A ++ +G+ 
Sbjct: 530 RFGYCKLLDKSTYDRNQETVDTEQV--HVVKCLNTDKICLFAASGSLYQIKAMDVPAGKL 587

Query: 586 HGE--AIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKT 640
             +   I+ L   +  +D +         K    +  +       V   E   N R    
Sbjct: 588 RDKGTPIENLSKFDGAKDTIVYLTSAEDMKGRIFVFATKMAMVKQVPSEEFETNNRV-VA 646

Query: 641 FLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGIS 698
             K+   +++  V+ V G+  V +       L F++++I  + +  +GVR          
Sbjct: 647 ATKLQEGDELAAVIPVEGETEVVIQTTGGVFLRFALEEISMLKKASRGVRGIRLTKNEEL 706

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           +   + I E             +  +     L KR G GS V
Sbjct: 707 E-KLYLIGENPIV-----DYKGKEVHLNRLKLAKRDGKGSKV 742


>gi|254368711|ref|ZP_04984724.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121632|gb|EDO65802.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 741

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 252/735 (34%), Positives = 406/735 (55%), Gaps = 18/735 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKN 317
                   +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES +    +IVL+   
Sbjct: 252 ----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  + + +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 IKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++   F        RR+
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILTDFGD-----SRRS 482

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 +A +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 483 KIIVAEKA-QALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    D  +  V    + +I    
Sbjct: 602 SESGKAFVIPAEDLITNKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRGG 735
               + +GKG  +           I          +++  R     S+N    +  K  G
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTLNAGKRFIRIDSKNIETYYSDKPSG 718

Query: 736 VGSLVPKGFPRSGKF 750
            G L+P+GF +  K 
Sbjct: 719 GGVLLPQGFRKITKI 733


>gi|209554161|ref|YP_002284902.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|209541662|gb|ACI59891.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
          Length = 855

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 215/742 (28%), Positives = 380/742 (51%), Gaps = 27/742 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDIHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG I         +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVH-RTPTLVSLSTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D  +         F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKILKERIKSLQVRKNYLKQKMIEFKKEFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-- 545
                 R+   F E  +A     +  MIEK+ + +VIS  G+I+ +   S + S      
Sbjct: 480 ----YQRKTKLFDEFIKA--EVNEDQMIEKQSLNLVISRDGYIKIVSKKSFESSKYDELG 533

Query: 546 -KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +   R     E +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYDS-----TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +V +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 713 DSAGRSYNRSENDLLGWLGKRG 734
               +  N+  +     L KR 
Sbjct: 714 LFLDQG-NKCFSISELKLSKRA 734


>gi|134302521|ref|YP_001122491.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050298|gb|ABO47369.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 741

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 251/735 (34%), Positives = 404/735 (54%), Gaps = 18/735 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIIGSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKN 317
                   +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES +    +IVL+   
Sbjct: 252 ----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 IKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D     + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDSSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++   F        RR+
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILTDFGD-----SRRS 482

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 +A +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 483 KIIVAEKA-QALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAARYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    D  +  V    + +I    
Sbjct: 602 SESGKAFVIPAEDLITNKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRGG 735
               + +GKG  +           I          +++  R     S+N    +  K  G
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTLNAGKRFIRIDSKNIETYYSDKPSG 718

Query: 736 VGSLVPKGFPRSGKF 750
            G L+P+GF +  K 
Sbjct: 719 GGVLLPQGFRKITKI 733


>gi|283797753|ref|ZP_06346906.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
 gi|291074428|gb|EFE11792.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
          Length = 746

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 218/763 (28%), Positives = 363/763 (47%), Gaps = 54/763 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L      
Sbjct: 1   MAEKIIKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELHLGHDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ + AE + L+ +D+  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSI
Sbjct: 121 EARLEKFAEEVYLKDLDK-TVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +   A IDNPE+  E+LL ++ GPDFPTGGII  +++ +   Y  G G  +
Sbjct: 180 PPHNLGEVVDTVQAFIDNPELRTEELLGHLHGPDFPTGGIIA-NKKDLASIYETGSGKIK 238

Query: 252 VRARWCVE--EVGRGSWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIRDESA 306
           +RA+  VE  +       +V+TEIPY +     ++ +  IAEL+ +K++  + DI ++S 
Sbjct: 239 LRAKMEVELGKRKADKDKLVITEIPYTMIGAGINKCLMDIAELVESKKLTDVVDISNQSN 298

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    +  D + +   ++  + +E  + +NM  +     P+ + L GILK +L 
Sbjct: 299 KEGIRIVLELRKDADVEKIRNILYKKTKLEDTYGVNMLAIVK-GRPETLNLRGILKNYLD 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------- 419
            + E   R+    ++    + EI +GL+ A   ID IIA++R     K            
Sbjct: 358 FQYENNTRKYRVLLEKELEKKEIQEGLIRACDVIDLIIAVLRGSRNLKDARACLINGDTS 417

Query: 420 --------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                         +   TE Q  AIL +RL  L  LE   ++ E    L + ++ + +L
Sbjct: 418 AIRFKTPELEEDAGKLRFTEKQASAILEMRLYKLIGLEILALEKEHRETLRKIKEYEKIL 477

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +        I  ++  +K  F+       RRT   +   A      ++ +E   +  V+ 
Sbjct: 478 SDKGTMDQVIKEDLAAIKREFACP-----RRTLIEDGKEA---VYDESAVEVREVVFVMD 529

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
             G+ R +   + D         +     +    TDRI L +  G  + +   ++  G+ 
Sbjct: 530 RFGYSRIVDRSTYDR--NRETIENENPHVICCLNTDRICLFTDAGVLHQVKVTDIPLGKL 587

Query: 586 HGE--AIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGK 639
             +   I  L   +  ++  T FV ++        L  +       V   E   N R   
Sbjct: 588 RDKGTPIDNLCKFDGTKEQ-TVFVTNASSLQGKLFLFATRDAMLKRVPGEEFETNNR-MV 645

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
              K+   + +  V        V +  +N   L F++D+I    +  +GVR      G  
Sbjct: 646 AATKLQEGDSLVSVQPADEASEVVLQTDNGVFLRFAMDEISVQKKNARGVRGIKLGRGEA 705

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            + +        + I        +  +      G+R G G+ V
Sbjct: 706 LEQVYLLGANTESVITYKE----KQVHLNRLKQGRRDGKGNKV 744


>gi|239816398|ref|YP_002945308.1| DNA topoisomerase IV subunit A [Variovorax paradoxus S110]
 gi|239802975|gb|ACS20042.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus S110]
          Length = 798

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 262/795 (32%), Positives = 412/795 (51%), Gaps = 74/795 (9%)

Query: 6   ISNSNTLVE-----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           + +S   ++     +    ++L    +  YL YALS +K RA+PD+ DG KPV RRI+++
Sbjct: 1   MDDSQPPLDLQGPTDGDTTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYS 60

Query: 61  MSEMGLDFGA-------AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           MS MGL FG           KSAR+VG+V+G+ HPH DQ+ YD+LVR+AQ F QRYPL  
Sbjct: 61  MSRMGLGFGGANGTVGAKPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLAD 120

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG+ DGD AAA RYTEAR+ ++  L+L  +DE  VDF   Y+    EP + P++ P
Sbjct: 121 GQGNFGSRDGDGAAAMRYTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLP 180

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGII 232
             L NG SGIAVG+AT IPSHN++EI +A +ALI +  ++S E+LL+ + GPD+P G  I
Sbjct: 181 FTLLNGASGIAVGLATEIPSHNLREIADACVALIKSNGKLSDEELLQIVPGPDYPGGAQI 240

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
           +     I ++YR GRG  +VRARW +E++ RG W +VV E+P  V   +++E+I E+   
Sbjct: 241 ISGPADIADAYRTGRGSLKVRARWKIEDLARGQWQLVVNELPPGVSTQKVLEEIEEITNP 300

Query: 293 KRIPL------------------LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFML 332
           K                      L+ +RDES     VR+V  PK   +  D  + ++   
Sbjct: 301 KVKAGKKALSADQTQLKAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQDEFITTLLAQ 360

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           + +ET  P+N+ ++ +   P    L  +L EW+A R   + +RS FR+  +  R+ IL+G
Sbjct: 361 TSLETSSPINLTMVGIDGKPTQKSLRQMLNEWIAFREVTVEKRSRFRLNKVMDRIHILEG 420

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
             +  LNIDE+IAIIR  + PK  +++RF+L+E Q + IL +RLR L +LE  +I+ +LD
Sbjct: 421 RQLVLLNIDEVIAIIRAAEDPKAALIARFNLSEVQAEDILEIRLRQLARLEGIKIQQQLD 480

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            L  E++K++ +L S       +  EI    + F        RRT      +A+K  + +
Sbjct: 481 ELRTEQKKLEDILGSPAALRRLLVKEIEADAKTFEDP-----RRTLI----QAEKRAVAE 531

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA--------LHAHTTDRIL 564
             +  EP+TV++S +GW+R+ K  + + +A +                      + D +L
Sbjct: 532 VKVVDEPVTVIVSQKGWVRAQKGWASEKAAGNGGTAPEYSFKSGDTLYGAFECRSVDTLL 591

Query: 565 LLST----DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           +  +      + YT+P  +L   RG G+ +  LI+L+    +   F       +L+ ++ 
Sbjct: 592 VFGSAKDKSVRVYTVPVASLPGARGDGQPVTTLIELDAGTHVTHFFAGPVGASVLLANTG 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG----------DHVAVVGENRKL 670
           G  FI     +++  R GK F+ V   E++     V G           HVA      ++
Sbjct: 652 GYGFIATVENMMSRQRGGKAFIDVGEGEQLCRPSLVGGASGAEPMPAATHVACASTGGRI 711

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           L F I ++  + + G+G+ L        ++    +        I+  GR     +  L  
Sbjct: 712 LTFDIAELKSLPKGGRGLTLIDLDAKDTLAGAAAYTRS---VKIEGIGRGGKERDETLEI 768

Query: 729 W-----LGKRGGVGS 738
                  G R   G 
Sbjct: 769 RTLNNARGSRARKGK 783


>gi|89255872|ref|YP_513234.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314361|ref|YP_763084.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010098|ref|ZP_02275029.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC200]
 gi|169656530|ref|YP_001427921.2| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254367236|ref|ZP_04983264.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica 257]
 gi|89143703|emb|CAJ78902.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129260|gb|ABI82447.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253054|gb|EBA52148.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica 257]
 gi|164551598|gb|ABU60965.2| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 741

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 252/735 (34%), Positives = 406/735 (55%), Gaps = 18/735 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKN 317
                   +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES +    +IVL+   
Sbjct: 252 ----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIKDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  + + +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 IKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++   F        RR+
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILTDFGD-----SRRS 482

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 +A +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 483 KIIVAEKA-QALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    D  +  V    + +I    
Sbjct: 602 SESGKAFVIPAEDLITNKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRGG 735
               + +GKG  +           I          +++  R     S+N    +  K  G
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTLNAGKRFIRIDSKNIETYYSDKPSG 718

Query: 736 VGSLVPKGFPRSGKF 750
            G L+P+GF +  K 
Sbjct: 719 GGVLLPQGFRKITKI 733


>gi|238063682|ref|ZP_04608391.1| DNA gyrase subunit A gyrA [Micromonospora sp. ATCC 39149]
 gi|237885493|gb|EEP74321.1| DNA gyrase subunit A gyrA [Micromonospora sp. ATCC 39149]
          Length = 829

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 216/773 (27%), Positives = 365/773 (47%), Gaps = 47/773 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L   + + YL YA S I  RA+PD RDG KPVHRRI+++M E G     A  KS
Sbjct: 22  RVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILYSMHEAGHRPDRAHVKS 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G+ HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA RYTEAR
Sbjct: 82  ARVVGDVMGRYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAARYTEAR 140

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+  A L++  + ED VD    Y+   ++P V P+ FPNLL NG SGIAVGMAT++  HN
Sbjct: 141 MSHEAMLLVGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  AA  LI++P+  ++KL+E++ GPD PTGG+++   + +  +Y  GRG  R+R R
Sbjct: 201 LAEVVSAARWLINHPDADLDKLMEFVPGPDLPTGGVLL-GLDEVRRAYETGRGVVRMRGR 259

Query: 256 WCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI-PLLEDIRDESAEDV-RI 311
             +   E  RG   I V E+PY V   ++I  +   +   +    + D++D +  +    
Sbjct: 260 VEIGPLEGSRGRQAITVVELPYGVGAEKVIAAVTNEVNKTKRLTGIADVKDLTDRENGTR 319

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++      ++P  L+  ++ L+ +E  F +N  VL     PQ + L  +L+ +L HR +V
Sbjct: 320 LVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVD-GQPQTLGLKALLEVFLRHRYDV 378

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RRS++R +    R+ ++ GLLIA L+ID+++ +IR+ D  +      + +F L++ Q 
Sbjct: 379 VTRRSAYRRRKRQERLHLVDGLLIALLDIDKVVRLIRSSDDAQAAKDGLMRQFKLSDIQA 438

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L K +  ++++E + L  E  ++ ++L+  K     ++ E+  V + F  
Sbjct: 439 SYILDTPLRRLTKFDRIELEAEQEQLRKEIAQLSTILDDEKVLRKVVSDELAAVVKKFGT 498

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                 RRTT  +    +               +P  V++S  G +    + S + +   
Sbjct: 499 E-----RRTTLVDGDLKEVLAASAPAGPLEVADDPCQVILSATGLVARTAAESEEAAEGR 553

Query: 545 FKEGDSLKIALHAHTTD----RILLLSTDGKAYTLPAGNLLSGRGH--------GEAIQL 592
            + G     A+ A        R+LL+++ G+A+ +    L              G +   
Sbjct: 554 RRSGRVKHDAVRALVHSTARGRVLLVTSAGRAFKIDVLPLPVLPEQAGTVSLRGGMSAAE 613

Query: 593 LIDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L+ L   + +V       T +    L + + +G   +                + +   +
Sbjct: 614 LVPLEPGESVVGLAPLGPTAEGSPGLALGTRQGVVKVCAPD--WPVRSDEFEVVGLREGD 671

Query: 649 KMKLVV-KVTGDH-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKI 705
           ++        G   +A V     LL F    +     +G G+   +   G          
Sbjct: 672 EVVGATWLADGSETLAFVSSEASLLRFPASLVRPQGPKGGGMAGINLPAGARVVFFGAVR 731

Query: 706 CEGLT-----WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
            +  +      + S G +  +           R   G    +     +   ++
Sbjct: 732 EDDPSHGEPMVVTSTG-ATVKVTPFEAYPAKGRATGGVRAQRFLKGETDLVVA 783


>gi|225388932|ref|ZP_03758656.1| hypothetical protein CLOSTASPAR_02673 [Clostridium asparagiforme
           DSM 15981]
 gi|225045014|gb|EEG55260.1| hypothetical protein CLOSTASPAR_02673 [Clostridium asparagiforme
           DSM 15981]
          Length = 741

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 217/759 (28%), Positives = 359/759 (47%), Gaps = 54/759 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +        ++  Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L+     +KS
Sbjct: 1   KILKTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPHRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+ +GK HPHGD S+Y++LV L+Q F +   L+ G GNFG+I+GD AAA RYTEAR
Sbjct: 61  ARIVGDTMGKYHPHGDSSIYETLVVLSQEFKKGMTLVDGHGNFGSIEGDGAAAMRYTEAR 120

Query: 136 MTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           + + AE + L+ +D+  VDF   Y+E + EP V P + PNLL NG  GIAVGM+TSIP H
Sbjct: 121 LEKFAEEVYLKDLDK-TVDFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPH 179

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A  A ID+P+IS EKL+E + GPDFPTGGII  ++  +   Y  G G  ++R 
Sbjct: 180 NLGEVVDAVDAYIDDPDISTEKLMELMPGPDFPTGGIIA-NKSDLPAIYETGSGKIKLRG 238

Query: 255 RWCVE--EVGRGSWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           +  VE  +       +V+TEIPY +     ++ +  +A+L+ +K++  + DI ++S ++ 
Sbjct: 239 KMEVELGKRKADKDKLVITEIPYTMIGAGINKFLMDVADLVESKKLTDVVDISNQSNKEG 298

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  D + +   ++  + +E  F +   +   G  P+ + L GILK +L  + 
Sbjct: 299 IRIVLELRKDADIEKIRNILYKKTKLEDTFGV-NMLAIAGGRPETLSLRGILKNFLDFQY 357

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------- 412
           +   ++    +Q    R E+ +GL+ A   ID IIA++R                     
Sbjct: 358 QNTEKKYRVLLQKERERQEVQEGLIAACDCIDLIIAVLRGSKNLKDARACLTTGDVSNIK 417

Query: 413 ----PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                      +   TE Q  AIL +RL  L  LE   ++ E    L +  + + +L S 
Sbjct: 418 FKTPGFEADAKKLHFTERQASAILEMRLYKLIGLEILALEKEHKETLRKIARYEKILGSR 477

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  ++  +K+ F+       R+T   +   A      +  ++ + +  V+   G
Sbjct: 478 ATMNQVIKDDLEAIKKEFALP-----RKTQIEDGPEA---VYDETAVQVQEVVFVMDRFG 529

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           + + L   + +               +    TD+ILL +  G  + L A ++ +G+   +
Sbjct: 530 YCKLLDKATYER--NRETVDTEQVHVVRCLNTDKILLFTDTGNLHQLKAMDVPAGKLRDK 587

Query: 589 --AIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              I  L   +  ++ +         K   L+  +       V   E   N R      K
Sbjct: 588 GTPIDNLSKFDGGKETIVYLADSRELKGKVLVFATRTAMVKQVPAEEFETNNRT-VAATK 646

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   + +  V  V G   V +   N   L F +++I  M +  +GVR      G   + +
Sbjct: 647 LQDGDALVSVTPVEGQTEVVLRTSNGVFLRFMLEEISVMKKNARGVRGIKLARGEELEAL 706

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                +    +D       +  +     L KR G GS V
Sbjct: 707 YLLGEDP--VVD----YKGKEVHMNRLKLAKRDGKGSKV 739


>gi|306822526|ref|ZP_07455904.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|309801406|ref|ZP_07695533.1| DNA gyrase/topoisomerase IV, A subunit [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554071|gb|EFM41980.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|308221921|gb|EFO78206.1| DNA gyrase/topoisomerase IV, A subunit [Bifidobacterium dentium
           JCVIHMP022]
          Length = 897

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 224/849 (26%), Positives = 358/849 (42%), Gaps = 109/849 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L  
Sbjct: 13  DPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLSP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM + A  +   + ED VDF   Y+ +  EP V PS  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARMARAALGMNADIAEDTVDFTPNYDNKLQEPTVLPSAIPNLLVNGGSGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ +P+ ++E L+ Y+ GPD+P+GG ++  R  I E+Y  GRG
Sbjct: 192 TNMATHNLGEVVAAAKHLMRHPDATLEDLMRYVPGPDWPSGG-VIVGRSGIREAYESGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +    D +   
Sbjct: 251 ALTTRSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP+ ++  +F  + ++  F +N   L     P  M L  +LK W+ H
Sbjct: 311 NGTRLVIEIKTGFDPNAVLAQLFRHTPLQDNFTINNVALV-NGRPHTMGLKEMLKVWVDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLT 424
           RR V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D  +         F L 
Sbjct: 370 RRVVIRRRSEFRRRKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTRLIAVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q   IL+LRLR L K+   ++++E D+L    E+++ +L S +     +  E+ E   
Sbjct: 430 DIQAQYILDLRLRRLTKMSRIELEAERDDLKQRIEELERILASDEALDGVVIDEMDEAVA 489

Query: 485 IFSKSTDL------------------------------------------GRRRTTFCEV 502
            +                                                        + 
Sbjct: 490 AYGTPRRTVLLDEDADGGLVPVTAHGDDGVSATALAAARTAATVSSAAADVAAAAKAAKK 549

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-----FKEGDSLKIALHA 557
           +  D AT     I+ EP  V++S  G I      +V+            + D +      
Sbjct: 550 AGEDNATATALQIDDEPCAVMLSATGLIARTHEDAVERWENRSGSDVRTKDDQIVSIFRT 609

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQDIVT 604
            T     L+++ G+        L S    G               +    D    + ++ 
Sbjct: 610 TTRSSYGLITSAGRLVLAHVVELPSVAPDGPLNVSGGVKAEELLGMTENTDPIRGERVIA 669

Query: 605 AFVYDSTCK------------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           A    ST              L + +  G             T    + + +   +++  
Sbjct: 670 AIAMPSTDDAGKDGDGAEPAPLALGTRNGVVKRWNRE--SPTTMDSWSVIDLKDGDEVLA 727

Query: 653 VVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE--- 707
             +   GD +  V  +  LL F    +    R   G+       G           E   
Sbjct: 728 AAEARDGDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIRLATGCSVAAFAVVPAEKVA 787

Query: 708 --------------GLTWIDS---------AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                         G   +                 +     +     RG  G    +  
Sbjct: 788 WTYDEGENGLFSASGAVVLTVAGDSEALPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFL 847

Query: 745 PRSGKFLSS 753
                 + +
Sbjct: 848 KGQNTLIFA 856


>gi|239626402|ref|ZP_04669433.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516548|gb|EEQ56414.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 744

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 216/762 (28%), Positives = 365/762 (47%), Gaps = 54/762 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ LD     
Sbjct: 1   MAEKIIRTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLDHDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQEFKKGMALVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ + A+ + L+ +D+  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSI
Sbjct: 121 EARLEKFAQEVYLKDLDK-TVNFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A ID+P+IS E+L+EY+ GPDFPTGGII  ++  +   Y  G G  +
Sbjct: 180 PPHNLGEVVDAVRAYIDDPDISTEQLMEYMPGPDFPTGGIIA-NKSELPVIYETGAGKIK 238

Query: 252 VRARWCVE--EVGRGSWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R ++ VE  +       +V+TEIPY +     ++ +  IA+L+ +K++  + DI ++S 
Sbjct: 239 LRGKFEVELGKRKADKDKLVITEIPYTMIGAGINKFLVDIADLVESKKLTDVVDISNQSN 298

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    +  D + +   ++  +  E  F +   +   G  P+ + L GIL+ +L 
Sbjct: 299 KEGIRIVLELRKDADIEKIKNILYKKTKFEDTFGV-NMLAIAGGRPETLSLKGILRNFLD 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------- 412
            + E   R+ +  +Q    + E+ +GL+ A   ID IIAI+R                  
Sbjct: 358 FQYENTERKYNVLLQKEMDKKEVQEGLITACDCIDLIIAILRGSKNLKDAKACLTNGDVS 417

Query: 413 -------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                         +   TE Q  AIL +RL  L  LE   ++ E    L +      +L
Sbjct: 418 NIRFKVQGFEEDAKKLHFTERQASAILEMRLYKLIGLEILALEKEHKETLRKIAGYKKIL 477

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +    I  ++  +KE FS       RRT   +   A      ++ ++ + +  V+ 
Sbjct: 478 GSRGEMNRVIKDDLAAIKEEFSVP-----RRTLIEDGPEA---VYDESAVQVQEVVFVLD 529

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
             G+ + L   + + +             +    TD+I L +  G  Y +   ++ +G+ 
Sbjct: 530 RFGYCKLLDKSTYERNQETVDTEQV--HVVRCLNTDKICLFAASGNLYQIKVMDVPAGKL 587

Query: 586 HGE--AIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKT 640
             +   I+ L   +  +D +         K   L+  +       V   E   N R    
Sbjct: 588 RDKGVPIENLSKYDGAKDSIVYLTCAQDLKGATLVFATKMAMVKQVPAEEFETNNR-MVA 646

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGIS 698
             K+   +++  ++ V G + V +   +   L F +++I  + +  +GVR          
Sbjct: 647 ATKLQEGDQVISILPVEGQEEVVLQTTSGVFLRFPLEEISVLKKASRGVRGIKLAKNEEL 706

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           +   + I +             +  +     L KR G GS V
Sbjct: 707 E-KLYLIGDNPVI-----DYKGKEVHMNRLKLAKRDGKGSKV 742


>gi|302148632|pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase
 gi|302148633|pdb|2XCQ|A Chain A, The 2.98a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase
          Length = 726

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 208/496 (41%), Positives = 317/496 (63%), Gaps = 11/496 (2%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +   L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+ 
Sbjct: 235 DFAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMT 294

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
              ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AA
Sbjct: 295 PDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAA 354

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGM
Sbjct: 355 AMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGM 414

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GR
Sbjct: 415 ATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGR 473

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G  ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++ 
Sbjct: 474 GSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSL 533

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L 
Sbjct: 534 RTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLE 592

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           H++ V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L
Sbjct: 593 HQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKL 652

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E++
Sbjct: 653 SEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIR 712

Query: 484 EIFSKSTDLGRRRTTF 499
           + F        RRT  
Sbjct: 713 DRFGD-----DRRTEI 723


>gi|154506274|ref|ZP_02043012.1| hypothetical protein RUMGNA_03816 [Ruminococcus gnavus ATCC 29149]
 gi|153793413|gb|EDN75833.1| hypothetical protein RUMGNA_03816 [Ruminococcus gnavus ATCC 29149]
          Length = 747

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 210/760 (27%), Positives = 353/760 (46%), Gaps = 51/760 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +        + + Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   +
Sbjct: 3   SESQIIRTEYSDVMRKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDKPY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 63  RKCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMVLVDGHGNFGSIEGDGAAAMRYT 122

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+T+  +   L  +D+D +DF   ++E + EP+V P + PNLL NG  GIAVGMATSI
Sbjct: 123 EARLTKFTQEAYLADLDKDIIDFGPNFDETEKEPLVLPVRVPNLLINGAEGIAVGMATSI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A  A + N  I+ ++L++YI GPDFPTGGI+V +++ + E Y  G+G  +
Sbjct: 183 PTHNLGEVIDAVKAYMKNDAITTKQLMKYIKGPDFPTGGIVV-NKDDLPEIYETGQGKIK 241

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R +  VE++  G   +V+TEIPY +  +   + +  +  L+  K+   + DI ++S+++
Sbjct: 242 IRGKVEVEDLKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKE 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  D + L   ++  + +E  F +   +      P+ + L  I++  +  +
Sbjct: 302 GIRIVLELKKGADVENLKNMLYKKTRLEDTFGV-NMLAVANGRPETLGLKAIIEHHVDFQ 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------- 419
            E+  R+    +     + E+ +GL+ A   ID II I+R     K              
Sbjct: 361 FELTTRKYKTLLAKELDKKEVQEGLIKACDVIDLIIEILRGSKSVKDAKACLTQGITENI 420

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                           TE Q  AIL +RL  L  LE   ++ E +  L    + + +LN 
Sbjct: 421 KFKSQISKKMAAMLRFTERQASAILEMRLYKLIGLEIEALQKEHETTLKNIARYEDILNH 480

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                  I  E+   K+ +       +RRT       A     +    E      +    
Sbjct: 481 YDSMATLIMEELDAFKKEYG-----RKRRTAIENAEAAVFEEKKVEEQEV-----IFLMD 530

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
            +  +                   K  ++   T +I L +  GK + +   +L  GR   
Sbjct: 531 RFGYAKTVDVSVYERNKEAADSENKYVVNCLNTGKICLFTDTGKMHQIKVMDLPYGRFRD 590

Query: 588 E--AIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           +   I  + + + +++ +   + D+      KLL  + +G    V+ SE     R     
Sbjct: 591 KGVPIDNVSNYSSSEEQI-VTICDAQQIAFEKLLFATKQGMIKRVDGSEFQVAKRT-IAA 648

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
            K+  E+ +  V  V    ++ +   +   L F   +IPE  +G  GVR    +     +
Sbjct: 649 TKLQEEDALIHVGMVQENQNIVLQTRDGYFLRFLTAEIPEKKKGAVGVRGIKLQKTDELE 708

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            I        T +        +        L KR GVG+ 
Sbjct: 709 QIHLFEEGTDTKVKYGE----KEVTLNRLKLAKRDGVGTK 744


>gi|212715651|ref|ZP_03323779.1| hypothetical protein BIFCAT_00551 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661018|gb|EEB21593.1| hypothetical protein BIFCAT_00551 [Bifidobacterium catenulatum DSM
           16992]
          Length = 895

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 220/847 (25%), Positives = 360/847 (42%), Gaps = 107/847 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L+ 
Sbjct: 13  DPRTVKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM Q A  +   + ED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARMAQAALGMNANIAEDTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P+GG ++  R+ I E+Y  GRG
Sbjct: 192 TNMATHNLGEVVAAAKYLMHHPDATLEELMRYVPGPDWPSGG-VIVGRKGIREAYETGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +    D +   
Sbjct: 251 ALTTRSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP+ ++  +F  + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 311 NGTRLVIEIKTGFDPNAVLAQLFKHTPLQDNFTINNVALV-NGRPHTMGLKEMLQVWVNH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           RR V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D     K  ++  F L 
Sbjct: 370 RRVVIRRRSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIKVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   ++++E D+L    E++D +L S +   + +  E+ E   
Sbjct: 430 EIQAQYILDLRLRRLTKMSRIELEAERDDLKQRIEELDRILASAEALDDVVIAEMDEAVA 489

Query: 485 IFSKSTDL------------------------------------------GRRRTTFCEV 502
            +                                                        + 
Sbjct: 490 TYGTPRRTVLLDEDADGRLVPVAAHGDDGVSASAVAAARAAATVSSAAADVAAAAKAAKK 549

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-----FKEGDSLKIALHA 557
           +  D A      I+ EP  V++S  G I      +++            + D +      
Sbjct: 550 AGEDNAAAMALQIDDEPCAVMLSATGLIARTSEDALERWENRSSADQRVKDDQIISIFRT 609

Query: 558 HTTDRILLLSTDGKAYTLPAGNLL-------------SGRGHGEAIQLLIDLNHNQDIVT 604
            T     L+++ G+        L                           D    + ++ 
Sbjct: 610 TTRSSYGLITSAGRLIVAHVVELPVVSADGPLHVTGGVHAEELIGTTENTDPIRGERVIA 669

Query: 605 AFVYDSTCK----------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           A    S             L + +  G             T    + + +  ++++    
Sbjct: 670 AIAMPSADDSGDNAVEPTPLALGTRNGVVKRWNRE--SPTTMDSWSVIDLKDDDEVLAAA 727

Query: 655 KV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI------- 705
           +    D +  V  +  LL F    +    R   G+      +G  +              
Sbjct: 728 EARDEDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIRLAEGCSAAAFAVVPASKVAWN 787

Query: 706 ----------CEGLTWIDS---------AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                       G   +                 +     +     RG  G    +    
Sbjct: 788 YEEGENGLFSASGAVVLTVAGDSEALPGTENGSAKVTPLEMYPTKGRGTGGVRSQRFLKG 847

Query: 747 SGKFLSS 753
               + +
Sbjct: 848 QDTLVLA 854


>gi|313678723|ref|YP_004056463.1| DNA topoisomerase IV subunit A [Mycoplasma bovis PG45]
 gi|312950625|gb|ADR25220.1| DNA topoisomerase IV, A subunit [Mycoplasma bovis PG45]
          Length = 861

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 203/719 (28%), Positives = 375/719 (52%), Gaps = 25/719 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             +   +L   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M ++GL     FKK
Sbjct: 14  SKIVQENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQHNKPFKK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD S+YD++VR+ Q +   + L+   GN G+ID D AAA RYTEA
Sbjct: 74  SARVVGDVIGKYHPHGDSSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A+ ++  + ++ V F   +++ + EPVV P   PNLL NG++GIA G AT +P H
Sbjct: 134 RLSEIADYVIGDIKKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEMPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +AA+A I NP I + K+ + I GPDFPTGG ++   + I E++  G+G   + +
Sbjct: 194 NLNEILDAAIAKIKNPAIELSKIAKIIQGPDFPTGG-VIYGTDGIHEAFERGKGRITLAS 252

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R+ V         I +TEIPY V KS+L+ +I  ++ ++ +  L +++D++  +   +L 
Sbjct: 253 RYNVY-SDNKYKYIEITEIPYGVVKSKLVHEIDLIVDSEEVAGLIEVKDQTDRNGINILI 311

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
             +++++ ++++  +F+ + M   +  N  V+     P+ M +  +L  +L H ++V  +
Sbjct: 312 TLDKNVNENVIVNYLFLKTQMRIYYNYNNVVIDNH-TPKTMGISALLDAYLKHVKDVKVK 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----PKPVMVSRFSLTENQVDA 430
              F +     R+EI+ G L      D++I +IR  +         ++S F  T NQ  A
Sbjct: 371 TIEFDLIKYKTRLEIVIGFLKVAKITDKVIEVIRKSENSKQGVIDNLMSAFDFTLNQATA 430

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I  LRL  L K +E+    E   L  + ++ + LL +  +  N +    R++K  F    
Sbjct: 431 IAELRLYKLSKTDEHTFILEKQELEEKIKQCELLLTNPDEFNNYLVSLFRDLKHKFG--- 487

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKE 547
              R R T  E+ + + +  Q+ +++ E + + IS  G+I+ +   + +   ++    KE
Sbjct: 488 ---RIRRTSIEIEQINSSVNQEDLVKDEEVFLGISKFGYIKKVSKKTYESNLITTYGIKE 544

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            D++     A + D++LL +  G    LP    N    +  G  +   +DL+  ++IV+ 
Sbjct: 545 DDNILFYDLASSLDKLLLFTNLGNYAYLPVFKVNESKWKEFGIHLSDFVDLSSGEEIVSV 604

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DH 660
                +D T  + + + KG    V   +   +   K    +K+ +++++       G   
Sbjct: 605 IKVSDFDVTNYVCMFTKKGQGKKVLLKDFDVSRFSKTFMAMKLKNDDELISAKLSNGLKD 664

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGR 717
           V ++ +N    ++S + +P    +  G +      G  +      K  + +  +  + +
Sbjct: 665 VLLITKNNFASLYSENDVPIYGLKSNGNKACYLASGDELVSFTVVKPNDSVALVSQSNK 723


>gi|260890950|ref|ZP_05902213.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
 gi|260859503|gb|EEX74003.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
          Length = 645

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 240/616 (38%), Positives = 360/616 (58%), Gaps = 9/616 (1%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           V+ +  +  L  E+   V +   ++  YL Y++S I  RA+PD+RDG KPVHRRI+ +MS
Sbjct: 28  VEGLPKATDLSNES--NVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMS 85

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           EMG+     FKKSARIVG+V+GK HPHGD SVY ++VR+AQ F  RY LI G GNFG+ID
Sbjct: 86  EMGMSHKTPFKKSARIVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSID 145

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEARM ++ E +L  + +D +D+R  ++E   EPVV P+K PNLL NG +G
Sbjct: 146 GDEAAAMRYTEARMAKITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANG 205

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +  +ALIDNPEISI++L+ YI GPDFPTGG I+  ++ I ++
Sbjct: 206 IAVGMATNIPPHNLGEVVDGIVALIDNPEISIDELITYIKGPDFPTGG-IINGKQGIYDA 264

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  RV  R  VE    G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+R
Sbjct: 265 YRTGRGKLRVAGRVEVETSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLR 324

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DE+  D   ++    +  + +L++ S++  +D++  F + M  L     P+V+ L  +L+
Sbjct: 325 DETDRDGIRIVIELKKGEESELILNSLYKFTDLQNTFGVIMLALVD-NAPRVLNLKQVLQ 383

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVS 419
           ++L HR EV+ RR+ F ++    R  IL+G  IA  NI+E+I IIR           +++
Sbjct: 384 KYLEHRFEVITRRTEFELKKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARTELIA 443

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F  +E Q  AIL++RL+ L  LE  +I  E + L+   E++  +L+   + +  I  E 
Sbjct: 444 KFGFSEIQAKAILDMRLQRLTGLERDKINQEYNELMLLIEELTGILSDDSKIYGIIKEEA 503

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            ++KE F        R               +  +   E   V        RS K   + 
Sbjct: 504 LKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYRSQKRGGIG 563

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           ++A +  E D +K    A T D +L+ +T GK +++    +     +  G+ I  +I+L+
Sbjct: 564 VNATNTIEDDVVKDMYIAKTLDTLLIFTTKGKVFSVKVYEIPETGKQARGKLIGNIINLD 623

Query: 598 HNQDIVTAFVYDSTCK 613
            ++ + T        K
Sbjct: 624 TDEKVSTIIRVREFEK 639



 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 13/104 (12%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKLVVKVTG-DHVAVVG 665
                ++ ++ KG    V      +  R G          ++ +K +      D + +  
Sbjct: 532 KDEEVVVTLTEKGYVKRVAIDTYRSQKRGGIGVNATNTIEDDVVKDMYIAKTLDTLLIFT 591

Query: 666 ENRKLLIFSID--QIPEMSR-GKGVRL----QSYKDGGISDVIC 702
              K  +FS+   +IPE  +  +G +L     +         I 
Sbjct: 592 TKGK--VFSVKVYEIPETGKQARG-KLIGNIINLDTDEKVSTII 632



 Score = 44.4 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 2/47 (4%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           I +    +    + Y +          KRGG+G             +
Sbjct: 531 IKDEEVVVTLTEKGYVKRVAIDTYRSQKRGGIGVNATNTIE--DDVV 575


>gi|225028803|ref|ZP_03717995.1| hypothetical protein EUBHAL_03082 [Eubacterium hallii DSM 3353]
 gi|224953887|gb|EEG35096.1| hypothetical protein EUBHAL_03082 [Eubacterium hallii DSM 3353]
          Length = 754

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 210/770 (27%), Positives = 357/770 (46%), Gaps = 60/770 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ YA+S I +RA+PD+RDG KPV RR+++AM E+GL      
Sbjct: 1   MSEQIIKTEFSDVMQKSYIDYAMSVICQRALPDVRDGLKPVQRRVLYAMQELGLSADKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV + Q F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYEALVVMEQDFKKGMPLVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EA++ +  + + L  +D++ VDF+  ++E + EPVV P + PNLL NG  GIAVGM TSI
Sbjct: 121 EAKLQKFTQDVYLADMDKNVVDFQPNFDETEKEPVVLPVRIPNLLINGAEGIAVGMTTSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +   A +DNPEI+ E+L+EY+ GPDFPTGGI+V +++ +   Y  G G  +
Sbjct: 181 PPHNLSEVVDGVKAYMDNPEITTEELMEYVKGPDFPTGGIVV-NQKELKNIYETGSGKMK 239

Query: 252 VRARWCVEEVGRGSWC--IVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +   E+  + S    +V+TEIPY +     S+ I  +  LI  K    + D+ +ES+
Sbjct: 240 LRGKVHFEKAKKRSERDKLVITEIPYTMIGANISKFISDVVSLIENKTTSDIIDVSNESS 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    R+ D + L   ++  + +E  F +   +      P+++ L  I+     
Sbjct: 300 KEGIRIVLELRRNADAERLENLLYKKTRLEDTFGV-NMLAIANGKPELLSLKDIISHHTK 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------- 419
              EVL R+    ++    + EI +GL+ A   ID II I+R     K            
Sbjct: 359 FHYEVLTRKYETLLKKELEQKEIKEGLIKACDIIDLIIEILRGSKSLKDAKSCLINGDTE 418

Query: 420 --------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                         +   TE Q  AIL +RL  L  LE   ++ E   +L + +K   +L
Sbjct: 419 NITFKTQKSKKEASKLCFTEKQASAILEMRLYRLIGLEIMALQEEYAEILKKIDKYQDIL 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
                    +  ++ ++K+ +        R+T       A         +  E   VV  
Sbjct: 479 EHPASMKRVMKKDLEKIKKNYG-----FDRKTELTNAKAAVVKA-----LPIEEKEVVFV 528

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
              +  S                   +  +H   TD+I + +  G  + +   ++ SGR 
Sbjct: 529 MDRFGYSKILDKNTYERNEETVLKEYRHIVHCMNTDKICVFTDTGVMHQIKVQDIPSGRL 588

Query: 586 HGE--AIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             +   +  + + +   + +   V D       LL V++     +V+ +E I   +K   
Sbjct: 589 RDKGTPLDNIGNYDSRNEQILLIVPDRTLKEASLLFVTASSMIKLVDGAEFI-VQKKTVA 647

Query: 641 FLKVSSEEKMKLVVKVTGDH------VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK 693
             K++  + +  V  V          + +  E    L F ++++    +G  G+R    +
Sbjct: 648 STKLAEGDILAAVRLVAAKEGSINAQIIMQSEEGYFLRFPLEEVTRKKKGAIGIRGMKLQ 707

Query: 694 DGGISD---VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           +        +   +  +  + I        +        L  R G G  V
Sbjct: 708 EDDHIKHVYLTGVENEDNPSIIY-----KEKELVFSKIRLMGRDGKGVKV 752


>gi|171742649|ref|ZP_02918456.1| hypothetical protein BIFDEN_01763 [Bifidobacterium dentium ATCC
           27678]
 gi|283456272|ref|YP_003360836.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|171278263|gb|EDT45924.1| hypothetical protein BIFDEN_01763 [Bifidobacterium dentium ATCC
           27678]
 gi|283102906|gb|ADB10012.1| gyrA2 DNA gyrase subunit A [Bifidobacterium dentium Bd1]
          Length = 897

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 224/849 (26%), Positives = 358/849 (42%), Gaps = 109/849 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L  
Sbjct: 13  DPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLSP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM Q A  +   + ED VDF   Y+ +  EP V PS  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARMAQAALGMNADIAEDTVDFTPNYDNKLQEPTVLPSAIPNLLVNGGSGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ +P+ ++E L+ Y+ GPD+P+GG ++  R  I E+Y  GRG
Sbjct: 192 TNMATHNLGEVVAAAKHLMRHPDATLEDLMRYVPGPDWPSGG-VIVGRSGIREAYESGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +    D +   
Sbjct: 251 ALTTRSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP+ ++  +F  + ++  F +N   L     P  M L  +LK W+ H
Sbjct: 311 NGTRLVIEIKTGFDPNAVLAQLFRHTPLQDNFTINNVALV-NGRPHTMGLKEMLKVWVDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLT 424
           RR V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D  +         F L 
Sbjct: 370 RRVVIRRRSEFRRRKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTRLIAVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q   IL+LRLR L K+   ++++E D+L    E+++ +L S +     +  E+ E   
Sbjct: 430 DIQAQYILDLRLRRLTKMSRIELEAERDDLKQRIEELERILASDEALDGVVIDEMDEAVA 489

Query: 485 IFSKSTDL------------------------------------------GRRRTTFCEV 502
            +                                                        + 
Sbjct: 490 AYGTPRRTVLLDEDADGGLVPVTAHGDDGVSATALAAARTAATVSSAAADVAAAAKAAKK 549

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-----FKEGDSLKIALHA 557
           +  D AT     I+ EP  V++S  G I      +V+            + D +      
Sbjct: 550 AGEDNATATALQIDDEPCAVMLSATGLIARTHEDAVERWENRSGSDARTKDDQIVSIFRT 609

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQDIVT 604
            T     L+++ G+        L +    G               +    D    + ++ 
Sbjct: 610 TTRSSYGLITSAGRLVLAHVVELPAVAPDGPLNVSGGVKAEELLGMTENTDPIRGERVIA 669

Query: 605 AFV---YDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           A      D   K         L + +  G             T    + + +   +++  
Sbjct: 670 AIAMPSVDDAGKDGDGAEPAPLALGTRNGVVKRWNRE--SPTTMDSWSVIDLKDGDEVLA 727

Query: 653 VVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE--- 707
             +   GD +  V  +  LL F    +    R   G+       G           E   
Sbjct: 728 AAEARDGDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIRLATGCSVAAFAVVPTEKVA 787

Query: 708 --------------GLTWIDS---------AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                         G   +                 +     +     RG  G    +  
Sbjct: 788 WTYDEGENGLFSASGAVVLTVAGDSEALPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFL 847

Query: 745 PRSGKFLSS 753
                 + +
Sbjct: 848 KGQNTLIFA 856


>gi|225351328|ref|ZP_03742351.1| hypothetical protein BIFPSEUDO_02921 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157672|gb|EEG70955.1| hypothetical protein BIFPSEUDO_02921 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 895

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 218/847 (25%), Positives = 354/847 (41%), Gaps = 107/847 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L+ 
Sbjct: 13  DPRTVKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM Q A  +   + E+ VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARMAQAALGMNANIGENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P+GG ++  R  I E+Y  GRG
Sbjct: 192 TNMATHNLGEVVAAAKHLMHHPDATLEELMRYVPGPDWPSGG-VIVGRNGIREAYETGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +  + D +   
Sbjct: 251 ALTTRSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGVIDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP+ ++  +   + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 311 NGTRLVIEIKTGFDPNAVLAQLLKHTPLQDNFTINNVALV-NGRPHTMGLKEMLQVWVDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLT 424
           RR V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D            F L 
Sbjct: 370 RRVVIRRRSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDADAAKTKLIAVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   +++SE D+L    E++D +L S +   N +  E+ E   
Sbjct: 430 EIQAQYILDLRLRRLTKMSRIELESERDDLKQRIEELDRILASAEALDNVVISEMDEAVA 489

Query: 485 IFSKSTDL------------------------------------------GRRRTTFCEV 502
            +                                                          
Sbjct: 490 TYGTPRRTVLLDEDADGKLVPVVAHGDDGVSASAMAAARAAATVSSAAADVAAAAKAATK 549

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-----HFKEGDSLKIALHA 557
           +  D A      I+ EP  V++S  G I      +++              D +      
Sbjct: 550 AGEDNAAAVALQIDDEPCAVMLSATGLIARTSEDALERWENRSSADKRVRDDQIISIFPT 609

Query: 558 HTTDRILLLSTDGKAYTLPAGNLL-------------SGRGHGEAIQLLIDLNHNQDIVT 604
            T     L+++ G+        L                      +    D    + ++ 
Sbjct: 610 TTRSSYGLITSAGRLIVAHVVELPVVSADGPLHVTGGVHAEELIGMTENTDPIRGERVIA 669

Query: 605 AFVYDSTCK----------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           A    +             L + +  G             T    + + +  ++++    
Sbjct: 670 AIAMPTADDSGDHAAEPAPLALGTRNGVIKRWNRE--SPTTMDSWSIIDLKDDDEVLAAA 727

Query: 655 KV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI------- 705
           +    D +  V  +  LL F    +    R   G+      +G                 
Sbjct: 728 EARDEDRLVFVSTDSSLLTFDAKNVRPQGRTAGGMAGIRLAEGCSVAAFAVIPANKVAWN 787

Query: 706 ----------CEGLTWIDS---------AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                       G   +                 +     +     RG  G    +    
Sbjct: 788 YEEGDNGLFSASGAVVLTVAGDSEALPGTENGSAKVTPLEMYPTKGRGTGGVRSQRFLKG 847

Query: 747 SGKFLSS 753
               + +
Sbjct: 848 QDTLILA 854


>gi|149177757|ref|ZP_01856357.1| type II DNA topoisomerase, A subunit [Planctomyces maris DSM 8797]
 gi|148843407|gb|EDL57770.1| type II DNA topoisomerase, A subunit [Planctomyces maris DSM 8797]
          Length = 802

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 246/776 (31%), Positives = 395/776 (50%), Gaps = 43/776 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMG 65
           + +     + ++ V +      RYL YA+S I  RA+PD+RDG KPV RRI++ M  ++ 
Sbjct: 14  NGTPGTESDRIEYVPISDVTRRRYLNYAMSVITSRALPDVRDGLKPVQRRILYVMYHDLR 73

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L   A  +K A+I G+  G  HPHGD SVYD+LVRLAQ F  R PLI+GQGNFG+I G  
Sbjct: 74  LMANAKPRKCAKICGDTTGNYHPHGDASVYDALVRLAQDFNLRSPLINGQGNFGSIMGLP 133

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AE ++  +    V+ R  Y+    EPVV P++FPNLL NG  GIAV
Sbjct: 134 AAAARYTEARLTGIAEHLMNELRYQTVEMRPNYDGTRDEPVVLPARFPNLLVNGVHGIAV 193

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A + LI + + ++ +L+++I GPDFP GG IV  + S+   Y+ 
Sbjct: 194 GMATNIPPHNLGEVIKACVHLIHHDDATVAQLMKHIKGPDFPMGGRIVTDKRSLTAVYKE 253

Query: 246 GRGGFRVRARW--CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           GRG  +VR  W        +G   +VV  +PY V+   L+ +I  ++ ++++P L D+ D
Sbjct: 254 GRGPVKVRGEWKPEPGTRTKGVQRLVVYSVPYGVETGSLLSEIGGIVESRKLPQLVDVAD 313

Query: 304 ESAEDVRIVLF-PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQVMPLD 358
           E+ +   + +        DP+ +M  ++  +++E  F +NM  L        VP+   L 
Sbjct: 314 ETDDKNGLKIVLEIKPDADPETVMAFLYKHTNLEQNFSVNMTCLVPDESEVLVPRRCDLK 373

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP 415
            +L+ +L  R   + +R  +++Q ++RR+ ILKG  I + ++D+ + +IR          
Sbjct: 374 EMLQYFLDFRFISVRKRFEYQLQLLERRIHILKGFAIIFNDLDKALKLIRASSGKQDAAK 433

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            +++ F L E Q  AIL L+L  + KLE   I+ EL    AE EKI  +L S K+ W  +
Sbjct: 434 KLMANFPLDEIQTMAILELQLYRISKLEINTIREELAEKEAEAEKIRKILASDKRLWKVV 493

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E++E+ + F        +R T    S        QA I +E   VV+S  GWI+    
Sbjct: 494 ENELKELADEF------PEKRQTKLGSSEEITEFDPQAYIVRENTNVVVSREGWIKRVGR 547

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
              K  + +L+    +EGDS+       T D ++  S+DG AYTLP   +    G+GE +
Sbjct: 548 LKTKEGTQELAKTRTREGDSVLAVAPGSTLDHVVFFSSDGVAYTLPIEQVPVSSGYGEPL 607

Query: 591 QLLIDLNHNQDIVTAFVYD---------------STCKLLVVSSKGNAFIVEESEI-IAN 634
                ++    +V A   D                T  +L+V+ KG    +  S    A+
Sbjct: 608 SKHARMSDGAVLVAAVTTDSRFTPEDKATKKQPLPTPHVLIVTEKGQFMRISFSLFRTAS 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
           T+ G+ + ++  ++++     V   + + +  ++ ++L   I++   +S  GKGV+    
Sbjct: 668 TKAGRKYCRLGKDDRVVYAGLVEEAETMFIATQDARVLHCEIEEAALLSNAGKGVKGIRL 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           + G     +                    +   +   +  RGG G    K   RSG
Sbjct: 728 EKGDQVIGVLQLTRPSDCLRVINTAGKKMTFGQMKYGVTSRGGKGV---KTSQRSG 780


>gi|323484277|ref|ZP_08089645.1| hypothetical protein HMPREF9474_01396 [Clostridium symbiosum
           WAL-14163]
 gi|323402429|gb|EGA94759.1| hypothetical protein HMPREF9474_01396 [Clostridium symbiosum
           WAL-14163]
          Length = 746

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 214/762 (28%), Positives = 362/762 (47%), Gaps = 52/762 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        ++  Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L      
Sbjct: 1   MAEKIITTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLGSDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ + AE + L+ +D+  V F   Y+E + EP V P + PNLL NG  GIAVGM+TSI
Sbjct: 121 EARLEKFAEEVYLKDLDK-TVPFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A IDNPE + ++LL+ + GPDFPTGGII  ++  ++  Y  G G  +
Sbjct: 180 PPHNLGEVVDTVMAYIDNPECTTKELLDILHGPDFPTGGIIA-NKSDLLNIYETGSGRIK 238

Query: 252 VRARWCVE--EVGRGSWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIRDESA 306
           +RA+  VE  +       ++++EIPY +     ++ +  IA+L+ +K++  + DI ++S 
Sbjct: 239 LRAKLEVELGKRRVDKDKLIISEIPYTMIGAGINKCLVDIADLVESKKLTDVVDISNQSN 298

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    +  D + +   ++  + +E  F +   +   G  P+ + L GILK +L 
Sbjct: 299 KEGIRIVLELKKDADIEKIKNILYKKTKLEDTFGV-NMLAIAGGRPETLTLKGILKNYLD 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---- 422
            + E   R+ +  ++    + EI +GL+ A   ID IIAI+R     K            
Sbjct: 358 FQYENNTRKYNVLLEKELEKKEIREGLIKACDVIDLIIAILRGSKNLKDAKACLMEGDIS 417

Query: 423 -----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                             TE Q  AIL +RL  L  LE   ++ E    L + ++ + +L
Sbjct: 418 NIHFKTPGFDEDARKLRFTEKQASAILEMRLYKLIGLEILALEKEYKETLRKIKEYEKIL 477

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S     + I  ++ E+K  F+       RRT   +   A      +  +E   +  V+ 
Sbjct: 478 SSKLTMDDVIKKDLEEIKAEFATP-----RRTLIEDGKEA---VYDETAVEIREVVFVMD 529

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--G 583
             G+ + +   + D +             +    TD+I L +  G  + + A ++     
Sbjct: 530 KFGYGKLVDRATYDRNQET--IEGENPHVIPCLNTDKICLFTDTGLLHQVKASDIPFGKM 587

Query: 584 RGHGEAIQLLIDLN-HNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
           R  G  +  L   +   +  +      +    +LL  +      +V   E   N R    
Sbjct: 588 RDKGTPVDNLCKFDGTKERPIFIINASALVGRRLLFATKGAMVKLVPGEEFETNNR-MVA 646

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K+   + +  +    G     +   N   L F +++I  + +  KGVR      G   
Sbjct: 647 ATKLQDGDMVVSIQLTDGRTEAVLQTTNGVFLRFDLEEISTLKKNSKGVRGIKLGRGEEL 706

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           + +     +    +        +  +     +GKR G GS V
Sbjct: 707 EQVYLLGTDSEQTVMYKE----KQVHLNRLKIGKRDGKGSKV 744


>gi|315502966|ref|YP_004081853.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
 gi|315409585|gb|ADU07702.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
          Length = 829

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 219/765 (28%), Positives = 363/765 (47%), Gaps = 46/765 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L   + + YL YA S I  RA+PD RDG KPVHRRI+ +M E G        KS
Sbjct: 22  RVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMHEQGHRPDRGHVKS 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA RYTEAR
Sbjct: 82  ARIVGDVMGKYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAARYTEAR 140

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++ A L+   + ED VD    Y+   ++P V P+ FPNLL NG SGIAVGMAT++  HN
Sbjct: 141 MSREAMLLTGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA  LI++P+ +++KL+E++ GPD PTGG+++   + +  +Y  GRG  R+R R
Sbjct: 201 LGEVVQAARWLINHPDATLDKLMEFVPGPDLPTGGLLLG-LDEVRRAYETGRGVVRMRGR 259

Query: 256 WCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI-PLLEDIRDESAEDV-RI 311
             +   E  RG   I VTE+PY V   ++I  I   +   +    + D++D +  +    
Sbjct: 260 VEIGPLEGSRGRQAITVTELPYGVGAEKVIAAITNEVNKTKRLTGIADVKDLTDRENGTR 319

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++      ++P  L+  ++ L+ +E  F +N  VL     P+ + L  +L  +LAHR EV
Sbjct: 320 LVVECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVD-GQPRTLGLKELLDVFLAHRYEV 378

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RRS++R +  + R+ ++ GLLIA L+ID ++ +IR  +  +      + RF L+E Q 
Sbjct: 379 VTRRSAYRKRKREERLHLVDGLLIALLDIDRVVKLIRASEDAQAAKDGLMQRFKLSEIQA 438

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L K +  ++++E + L  E  ++  +L+  K     ++ E+  V + F  
Sbjct: 439 TYILDTPLRRLTKYDRLELEAEQEKLRGEIAELSKILDDEKVLRKVVSDELAAVVKQFGA 498

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                 RRTT  +    +               +P  V++S  G +    + S + +   
Sbjct: 499 P-----RRTTLVDGDLKEVLAASVPAGPLEVADDPCQVILSATGLVARTAAESEEAAEAR 553

Query: 545 FKEGDSLKIALHAHTTD----RILLLSTDGKAYTLPA--------GNLLSGRGHGEAIQL 592
            + G     A+ A        R+LL+++ G+A+ +           +       G +   
Sbjct: 554 RRSGRVKHDAVRAIVHSTARGRVLLVTSAGRAFKIDVLPLPVLPEQSGTVSLRGGMSAAE 613

Query: 593 LIDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L+ L   + +V       + +    L + +  G   +                + +   +
Sbjct: 614 LVPLEPGETVVGLAPLGPSAQGSPGLALGTRAGVVKVCAPD--WPVRSDEFEVISLRDGD 671

Query: 649 KMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKI 705
           ++     +T   + +A V     LL F+   +     +G G+   +   G  +       
Sbjct: 672 EVIGATWLTDGAETLAFVSSEASLLRFAASVVRPQGLKGGGMAGINLPAGARAVFFGAIR 731

Query: 706 CEGL-----TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +         + S G +  +           R   G    +   
Sbjct: 732 TDDSKHGEPMVVTSTG-ATVKVTPFKAYPAKGRATGGVRAQRFLK 775


>gi|255284072|ref|ZP_05348627.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
 gi|255265417|gb|EET58622.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
          Length = 748

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 206/760 (27%), Positives = 365/760 (48%), Gaps = 49/760 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   +
Sbjct: 4   TQQQIIRTEYSEIMQKSYIDYAMSVIVSRALPDVRDGLKPVQRRTLYDMYELGIRYDRPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y++LV +AQ F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 64  RKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMRYT 123

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ +V +   L  +D++ V F   ++E + EP V P + PNLL NG  GIAVGM TSI
Sbjct: 124 EARLQKVTQEAFLADLDKNVVPFVPNFDETEKEPEVLPVRLPNLLVNGADGIAVGMVTSI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A +A I N  I+ E+L++YI GPDFPTGGI+V +++ + + Y+ G G  R
Sbjct: 184 PPHNLGEVIDAVIATIKNSNITTEELMQYIQGPDFPTGGIVV-NKDELTDIYKTGMGKIR 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R +  VE+   G   +V++EIPY +      + +  +A L+  K+   + DI ++S++D
Sbjct: 243 IRGKVDVEKGKNGKESLVISEIPYTMIGANIGKFLNDVAALVETKKTTDIVDISNQSSKD 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    ++ D + L+  ++  + +E  F +   +      P+ + L  I++  +  +
Sbjct: 303 GIRIVLELRKNADTNNLINMLYKKTRLEDTFSV-NMLAVSDGRPETLGLKKIIEHHIDFQ 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------- 419
            EV  R+    ++    + EI +GL+ A   ID II I+R     +              
Sbjct: 362 FEVNTRKYQTLLEKEQAKREIQEGLIKACDVIDLIIEILRGSKSREQAKECLVNGVTEGI 421

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                       +   T+ Q  AIL +RL  L  LE   ++ E D  +    + + LLN+
Sbjct: 422 RFKSRTSKKQAEQLHFTDAQATAILEMRLYKLIGLEIAALQKEHDETVKNIARYEDLLNN 481

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                 QI  E++ +K+ ++        R T  E      A  ++  +E+  +  ++   
Sbjct: 482 YGSMAKQIIKELQSLKKEYAVP------RKTVVENGEE--AVYEEKKLEEMEVVFLMDRF 533

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           G+ R++ + + +            +  +    TD+I L +  G  + +   ++  G+   
Sbjct: 534 GYARTVDAQTYER--NKETADAESRYVIPCMNTDKICLFTDTGSQHLIRVLDVPFGKFRD 591

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKL-----LVVSSKGNAFIVEESEIIANTRKGKTFL 642
           +   +    N++         +S  ++     +  +++G    VE SE     R      
Sbjct: 592 KGKPIDNFCNYSSAREAIVYVESLQRVKMSLFVFGTAQGMVKQVEGSEFDVAKRT-IAAT 650

Query: 643 KVSSEEKMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           K+   +++  V ++     AV   E+   L   I  IP   +G  GVR     +G   + 
Sbjct: 651 KLQEGDRLISVHRMDEAETAVFKTEHDICLRIRIGDIPLKKKGAIGVRGIRLGEGDRVEA 710

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           + +   E    I        +        +  R   G+ +
Sbjct: 711 MYYPDGEKDKTILYKE----KEIRLDRLKVAGRDTKGTKL 746


>gi|253580825|ref|ZP_04858088.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847895|gb|EES75862.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 748

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 205/762 (26%), Positives = 347/762 (45%), Gaps = 50/762 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENV        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 5   QENVIPTDYAEVMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+Y++LV +AQ F +   L+ G GNFG+I+GD AAA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGKTLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 134 ARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ + + L+ +D++ VDF   ++E + EPVV P + PNLL NG  GIAVGMATSIP
Sbjct: 125 ARLEKLTQDVFLEDLDKNVVDFMPNFDETEKEPVVLPVRIPNLLVNGADGIAVGMATSIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A  A + N +IS++ L+ Y+ GPDFPTGG +V +++ ++  Y  G G  RV
Sbjct: 185 PHNLGEVVDAVKAYMKNNDISVKGLMRYLKGPDFPTGG-LVVNKDDLLRIYETGTGKLRV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +    ++  G   +V+TEIPY +      + +  IA L+  K+   + DI ++S+++ 
Sbjct: 244 RGKVETVKLKGGRQQLVITEIPYTMIGANIGKFLNDIASLVENKKATDIVDISNQSSKEG 303

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  D + L   ++  + +E  F +   +      P+ + L  +++  +    
Sbjct: 304 IRIVLDLKRDADVENLTNMLYKKTKLEDTFGV-NMLAVADGRPETLSLKQVIEHHVDFVF 362

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------- 422
           +V  R+ +  +     + EI +GL+ A   ID II I+R     + V             
Sbjct: 363 DVTTRKYTTLLNKEQEKKEIQEGLIKACDVIDLIIEILRGSKNREQVKKCLVDGVTEGIR 422

Query: 423 --------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                          +E Q  AIL++RL  L  LE   ++++    +      + +LN+ 
Sbjct: 423 FKGKSSEKAAQKLHFSEKQAAAILDMRLYKLIGLEIEALQADYAETMKNIAIYEDILNNY 482

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  E+ ++K+ +       +RRT             +        + V      
Sbjct: 483 DSMAEVIMKELDQIKKEYGT-----KRRTVIENAEEVVYEEKKMEE-----MEVTFLMDR 532

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +                      K   +   TD+I + + +GK +++   ++   R   +
Sbjct: 533 FGYMRTIDKSAYERNKEAANAENKYVFNCMNTDKICIFTDNGKMHSIKVADIPLVRFRDK 592

Query: 589 --AIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                 L + +  Q+    V          LL V++     +V  +E     R      K
Sbjct: 593 GTPADNLSNYDSAQERMLYVAPLASVKENTLLFVTAASMCKLVSGAEFDVAKRT-IVSTK 651

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++ E+ +  V      + V    E    L F    I  M +   GVR     +G   D  
Sbjct: 652 LAEEDSLIFVGSADEMEQVVFQSEGGYFLRFQKQDISAMKKTSIGVRGMKLAEGDKLDHA 711

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                     I    + Y  +       L KR   G+  P+ 
Sbjct: 712 YLLESRQEYTITYHDKPYVLN----RIKLSKRDSKGTK-PRI 748


>gi|269956722|ref|YP_003326511.1| DNA topoisomerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305403|gb|ACZ30953.1| DNA topoisomerase (ATP-hydrolyzing) [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 855

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 222/827 (26%), Positives = 372/827 (44%), Gaps = 87/827 (10%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     +      +E +  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MARKTTAPPVEPFDEKIVDIDVASEMESSFLEYAYSVIYARALPDARDGLKPVQRRILYM 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M++MGL     + KS+R++GEV+GKLHPHGDQ++YD+LVRLAQ F  R PL+ G GNFG+
Sbjct: 61  MADMGLRPDRPYVKSSRVIGEVMGKLHPHGDQAIYDALVRLAQDFSLRLPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   +  +  G+DED VDF   Y+ + ++P V PS  PNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLAPPSTAMTAGLDEDVVDFVPNYDNKLTQPEVLPSAIPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E+  A   L+ NP  ++E ++ ++ GPD PTGG IV   + I 
Sbjct: 180 SGIAVGMATNMAPHNLVEVVAAGQHLLANPAATLEDVMRFVPGPDLPTGGKIV-GLDGIR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG FR RA   +E +      I +TE+PY V   +++EKIA+ + AK+I  + +
Sbjct: 239 DAYRSGRGTFRTRATARIENITPRRRGITITELPYLVGPEKVVEKIADGVKAKKIQGVAN 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++D +       ++       DP+ ++E ++  + +E  F +N   L  G  P+ + L  
Sbjct: 299 VQDLTDRTHGMRLVVEVKTGFDPEAVLEQLYRTTPLEDSFGINNVALV-GGQPRTLGLLE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ W+ HR EV+ RR+++R+     R+ +++GLL+A ++IDE+I +IR+ D     +  
Sbjct: 358 LLRVWVEHRIEVVRRRTAYRLGKRKERLHLVEGLLLAIVDIDEVIQVIRSSDDAGIARAR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L+E Q   IL+L+LR L K    +++ E   L  E   ++ +L S       ++
Sbjct: 418 LMDVFDLSEPQATYILDLQLRRLTKFSRIELEKEQSELEKEIAALEEILGSDAVLRRVVS 477

Query: 477 CEIREVKEIFSKSTDL---------GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            E+ +V   +                         +R  K       I   P  V++S  
Sbjct: 478 TEMGDVAATYGTPRRTVLLDSAGGATTSAAAAPGGARGRKPAEISLEIADAPTHVLLSAT 537

Query: 528 GWIRSLKSHSVDL-----------------------------SALHFKEGDSLKIALHAH 558
           G +                                               D+L+  +   
Sbjct: 538 GLLARTAVAPAAAPTASEGDQLDLDGVALGAPGAPGASGAVSRHGRRHAHDALRGDVMTT 597

Query: 559 TTDRILLLSTDGKA--------YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           +   I L++T G+          ++P  +       G  +  L++L   ++ +       
Sbjct: 598 SRSDIGLVTTAGRMLRVSALELPSIPPTDGAPSLSGGIPVSELVELAPGEEALAVVSLAD 657

Query: 611 TC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENR 668
               L + ++ G    V  S++ +N +   T + +   + +         D V  +  + 
Sbjct: 658 DAPTLALGTAGGVVKRVAASDVPSN-KDEWTVIGLKDGDSVVGAAPAGDDDEVVFISSDS 716

Query: 669 KLLIFSIDQIPEMSRGKGVRLQ----------SYKDGGIS---DVICFKICEGLTWIDSA 715
            LL ++   +           Q          S   G       V    +   LT +   
Sbjct: 717 SLLHYAASAVRP---------QGRAGGGIAGISLAAGQTVVFFGVARAAVRPELTVVTVG 767

Query: 716 ---------GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    G    +     L     R   G    +      + + +
Sbjct: 768 GSAGQLPGVGGGSVKVTPYELYPGKGRATGGVRSHRFLKGEDRLVLA 814


>gi|260223056|emb|CBA33237.1| DNA topoisomerase 4 subunit A [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 812

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 283/783 (36%), Positives = 421/783 (53%), Gaps = 75/783 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA-------A 71
            ++L    +  YL YALS +K RA+PD+ DG KPV RRI+++M  MGL FG         
Sbjct: 27  ELNLATYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYSMGRMGLGFGGANGNAGAK 86

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RY
Sbjct: 87  PVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRY 146

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++  L+L  +D+  VDF+  Y+    EP   P++ P  L NG SGIAVG+AT I
Sbjct: 147 TEARLAKITTLLLDEIDQGTVDFQPNYDGSTEEPKQLPARLPFSLLNGASGIAVGLATEI 206

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           PSHN++E+ +A +ALI N ++S ++L   I GPDFP GG I+ S   I ++YR GRG  +
Sbjct: 207 PSHNLREVADACVALIKNDKLSDDELFTLIPGPDFPGGGQIISSASDIADAYRSGRGSLK 266

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------------- 297
           VRARW +E++ RG W +VVTE+P  V   R++E+I EL   K                  
Sbjct: 267 VRARWKIEDLARGQWQLVVTELPPGVSSQRVLEEIEELTNPKVKAGKKALSQEQTQLKAS 326

Query: 298 ----LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
               L+ +RDES +D  VR+V  PK+R+++   L+ ++   + +ET  P+N+ ++ +   
Sbjct: 327 ILSVLDVVRDESNKDALVRLVFEPKSRTVEQQELITALLAHTSLETSSPINLTMVGLDGK 386

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P    L  +L EW+A R   + RRS  R+  +  R+ IL+G     LNIDE+IAIIRN D
Sbjct: 387 PVQKSLRQMLVEWVAFRASTIERRSRHRLGKVLDRIHILEGRQTVLLNIDEVIAIIRNSD 446

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  +++RF+L++ Q + IL +RLR L +LE  +I+ EL  L  E+ K++ +L S    
Sbjct: 447 EPKAALIARFNLSDRQAEDILEIRLRQLARLEAIKIEQELSELRTEQGKLEEILGSPAAL 506

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              +  EI    ++F+ +     RRT      +A+K  + +  +  EP+TVV+S +GW+R
Sbjct: 507 RRLMVKEIEADAKVFADA-----RRTLI----QAEKKAVAEVKVVDEPVTVVVSEKGWVR 557

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           +   H  + S   FK GD L       T D +L+  ++G+ YT+P   L  GRG G+ + 
Sbjct: 558 ARTGHGHEASTFAFKAGDGLYGTFECRTVDTLLVFGSNGRIYTVPVSALPGGRGDGQPVT 617

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L++L     I+  F   S+ +LL+ SS G  FI     + +  + GK F+ V   E   
Sbjct: 618 TLLELEGGTQILYYFAGPSSAQLLLSSSGGYGFIASVENMTSRQKAGKAFVGVGEGETPC 677

Query: 652 LVVKVTG-----------------------------DHVAVVGENRKLLIFSIDQIPEMS 682
               V+G                              HVA      ++L F I ++  M+
Sbjct: 678 APSVVSGAQGKVTFAGKEGSTAPGAAGAQATLLAPATHVACASTGGRILTFEITELKTMA 737

Query: 683 R-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGG 735
             G+G+ L   +    ++    +        ID  GR     +  L           RG 
Sbjct: 738 NGGRGLMLIDLEAKDTLAGAAAYTRS---IRIDGIGRGGKERDETLEIRSLNNARAARGR 794

Query: 736 VGS 738
            G 
Sbjct: 795 KGK 797


>gi|225164035|ref|ZP_03726320.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
 gi|224801341|gb|EEG19652.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
          Length = 788

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 221/695 (31%), Positives = 352/695 (50%), Gaps = 39/695 (5%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A +VGEV+   HPHGD SVYD+LVRLAQP+V RYPLI  QGNFG++DGDSAAAYRYTE 
Sbjct: 1   CAGVVGEVLKNYHPHGDSSVYDTLVRLAQPWVMRYPLIDPQGNFGSVDGDSAAAYRYTEC 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +AE +L  ++ED VDF   YNE  +EP V PS  PNLL NG++GIAVGM T+IP H
Sbjct: 61  RLRDIAEALLADIEEDTVDFAPNYNESTTEPTVLPSSLPNLLMNGSTGIAVGMTTNIPPH 120

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A++A++DNP  ++++L + I GPDFPTGG+I   R+ I    R GRG  R+R 
Sbjct: 121 NLHELITASVAVLDNPATTLDELCQIIKGPDFPTGGVIA-GRDGIDSYLRTGRGIVRMRG 179

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R   EE   G   I++TEIPY V ++ L+ +IAEL+  K+I  + DIRDES E+ RIV+ 
Sbjct: 180 RAITEETKTGGEQIIITEIPYNVNRANLVTRIAELVTEKQIEGIRDIRDESDENTRIVIE 239

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K        ++  ++  + +E+ F + +  L   R P+ M +  +L  ++ HRR+V+ R
Sbjct: 240 LKRGEQSSP-ILNQLYQKTALESSFGVILLALDK-RRPKQMNIRELLDCYIDHRRDVITR 297

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ FR++  + R  IL+G  IA  N+D+ + IIR      + K  +++++ L+E Q D+I
Sbjct: 298 RTRFRLRRAEDRAHILEGYKIALDNLDDFVRIIRASASRQEAKEKLMAKYPLSERQTDSI 357

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L LRL  L  LE  +I++E   LL   E++  +L +  +    I  E+  +KE +  +  
Sbjct: 358 LELRLYQLTGLERDKIEAEYLELLKLIEELKVILENDWRLREVIKEELLVMKEKYGDARK 417

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
                    E++ A      + +I  E   + +S+ G+I+          K     +   
Sbjct: 418 T--------EITGALGDFRMEDVIPNEGCVITVSHLGFIKRTPSADYRSQKRGGKGVIGT 469

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
              + D ++    A T D I+ +++ G+       ++        G+++   + LN  + 
Sbjct: 470 ETYDEDFVEHLFTASTHDYIMFVTSTGQCLAKKVYDVPEGPRTAKGKSVSSFLRLNEGEK 529

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLVVK 655
           I        + S   L++ + +G       S+ +  TR    G   + ++  + +   V 
Sbjct: 530 IAAMLCLQDFASDRYLVMATRRGVIKKTALSDYLGTTRNLEGGLIGINLAEGDTIIGCVL 589

Query: 656 VTG-DHVAVVGENRKLLIFSIDQ-------IPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
            TG D + +V      + F                R   GV    +K       +   + 
Sbjct: 590 TTGNDEIILVSHQGLAVRFRERDPETGEELFRATGRATGGVTGMRFKLDNDQLDVIEVVD 649

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
               ++ ++              L  RGG G    
Sbjct: 650 HTAKFLVASEAGLGVRTRFEDYRLINRGGRGVWAI 684



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSEEKMKLVVKV---TGDHV 661
           V D T K LV S  G        +     R G+    + +  +  + +   +     D +
Sbjct: 647 VVDHTAKFLVASEAGLGVRTRFEDYRLINRGGRGVWAITLPDDNSINIAGALSVKDTDEI 706

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            ++    + +   ++ I E++R GKGV+L +  +G     I 
Sbjct: 707 MLLTTKGQSVRCPVNTIREVNRGGKGVKLLTLAEGDKLLSIA 748


>gi|167626575|ref|YP_001677075.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596576|gb|ABZ86574.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 739

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 256/736 (34%), Positives = 409/736 (55%), Gaps = 18/736 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR V
Sbjct: 11  QSVGEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++
Sbjct: 71  GDVLGKYHPHGDSACYEAMVLMAQNFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSK 130

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A L L+ NP+ SIE++LE I  PD+P G  I+ S+E I E Y+ G G  R +A +  
Sbjct: 191 VINACLHLLSNPKASIEEVLEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEY 250

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPK 316
           +        +++T +P+QV  + ++E+IA  +  ++I  +++I+DES +    +IVL+  
Sbjct: 251 D----NHGNVIITRLPHQVSSASVMEQIANQLKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +   +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +RR  L RR 
Sbjct: 307 STKKNIQKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRRHTLRRRL 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
              +  +  R+ IL+G+LIA+LNIDE+I IIRN D P   + SRF+L+E Q +AILN+RL
Sbjct: 367 QTSLDKVLDRLHILEGMLIAFLNIDEVIDIIRNYDDPSLELQSRFALSEIQAEAILNIRL 426

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L K+EE +IK E   L  EKE ++  LNS  +  N +  E++++   F        RR
Sbjct: 427 RKLAKIEEIEIKKEQKELQKEKELLEGYLNSEVKFKNLMKKELKQILADFGD-----SRR 481

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   E  +A +A  ++ ++  E +TV++S  GW+R  K  ++D   L +K  D   +A  
Sbjct: 482 SKIVEADKA-QALEEKDLMPSERVTVILSKAGWVRCAKGDNIDPKGLSYKPEDKPYLATS 540

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            ++  +++  +  GKAY++      S RG+GE I   I L+   +I+     +     L+
Sbjct: 541 GNSNIKLIFFTKLGKAYSMYVDKFPSARGYGEHITTYIPLDKEDEIINIEFANVAEHFLI 600

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSI 675
            S+ G  F++   ++IAN   GK    +   + +   +    D  +  V    + +I   
Sbjct: 601 ASTSGKGFVIPAEDLIANKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDF 657

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRG 734
           +    + +GKG  +           I     E    + +  R     ++N    +  K  
Sbjct: 658 ESFAVLKKGKGKAIIKLDKKDELKFIELFKPEQELTLSAGKRFIRIDNKNFETYYTDKPS 717

Query: 735 GVGSLVPKGFPRSGKF 750
           G G L+P+GF +  K 
Sbjct: 718 GGGVLLPQGFRKITKI 733


>gi|302148634|pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148635|pdb|2XCR|D Chain D, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148638|pdb|2XCR|S Chain S, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148639|pdb|2XCR|U Chain U, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
          Length = 726

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 207/496 (41%), Positives = 317/496 (63%), Gaps = 11/496 (2%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +   L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+ 
Sbjct: 235 DFAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMT 294

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
              ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AA
Sbjct: 295 PDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAA 354

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A R+TEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGM
Sbjct: 355 AMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGM 414

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GR
Sbjct: 415 ATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGR 473

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G  ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++ 
Sbjct: 474 GSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSL 533

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L 
Sbjct: 534 RTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLE 592

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           H++ V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L
Sbjct: 593 HQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKL 652

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E++
Sbjct: 653 SEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIR 712

Query: 484 EIFSKSTDLGRRRTTF 499
           + F        RRT  
Sbjct: 713 DRFGD-----DRRTEI 723


>gi|148377449|ref|YP_001256325.1| DNA topoisomerase IV subunit A [Mycoplasma agalactiae PG2]
 gi|148291495|emb|CAL58881.1| Topoisomerase IV subunit A [Mycoplasma agalactiae PG2]
          Length = 861

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 203/739 (27%), Positives = 373/739 (50%), Gaps = 25/739 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             +   +L   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M ++GL     FKK
Sbjct: 14  SKIIQENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQNNKPFKK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD S+YD++VR+ Q +   + L+   GN G+ID D AAA RYTE 
Sbjct: 74  SARVVGDVIGKYHPHGDTSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRYTEV 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  ++  + ++ V F   +++ + EPVV P   PNLL NG++GIA G AT +P H
Sbjct: 134 RLSEIANYVIGDIRKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEMPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +AA+A + NP I + KL + I GPDFPTGG I+   E I E++  G+G   + +
Sbjct: 194 NLNEILDAAIAKVKNPAIELTKLAKIIQGPDFPTGG-IIYGTEGIHEAFERGKGRITLAS 252

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R+ V         I +TEIPY V KS+L+ +I  ++ ++ +  L +++D++  +   +L 
Sbjct: 253 RYNVYTDS-KYKYIEITEIPYGVVKSKLVHEIDLIVDSEEVAGLLEVKDQTDRNGINILI 311

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
             ++  D ++++  +F+ + M   +    NV+     P+ + +  +L  +L H +++  +
Sbjct: 312 TLDKEADENVIVNYLFLKTQMRIYYNY-NNVVIDNYTPKTLGISALLDAYLKHVKDIKIK 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----PKPVMVSRFSLTENQVDA 430
              F +     R+EI+ G L      D++I +IR  +         ++S F  T NQ  A
Sbjct: 371 TIEFDLIKHKARLEIVIGFLKVAKITDKVIEVIRKSENSKQGVIDNLMSAFDFTLNQATA 430

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I  LRL  L K +E+    E + L  + ++ + LLN   +    +    +++K  F    
Sbjct: 431 IAELRLYKLSKTDEHAFLIEKEELEEKIKQCELLLNDSDEFNKYLIALFKDLKSKFG--- 487

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKE 547
              R R T  E  +   +  Q+ ++++E + + IS  G+I+ +     +   ++    KE
Sbjct: 488 ---RARRTSIENEQIKASINQEDLVKEEQVFLGISKFGYIKKVSKKIYESNLINTYGIKE 544

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTA 605
            D++    +A + D++LL +  G    LP   +     +  G  +   +DL   +++V+A
Sbjct: 545 DDNILFYDNASSLDKLLLFTNFGNYAYLPVFKVHESKWKEFGTHLSDFVDLTSGEELVSA 604

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DH 660
                +DS+  + + + KG    V   E   +   K    +K+ S++++       G   
Sbjct: 605 IKVSDFDSSNYVCLFTKKGQGKKVLLKEFDVSRFSKTFVAMKLKSDDELIGAKLSNGLKD 664

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V ++ +N    ++S +++P    +  G +     +          +    + +     + 
Sbjct: 665 VLLITKNNFASLYSENEVPIYGLKSNGNKACYLANYDELSAFAV-VSSNDSVVLINANNR 723

Query: 720 NRSENDLLGWLGKRGGVGS 738
            +  N        +   G 
Sbjct: 724 AKVVNVSEITKVSKANKGV 742


>gi|302148642|pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
           With Gsk299423 And Dna
 gi|302148643|pdb|2XCS|D Chain D, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
           With Gsk299423 And Dna
 gi|304445659|pdb|2XCT|B Chain B, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445660|pdb|2XCT|D Chain D, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445665|pdb|2XCT|S Chain S, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445666|pdb|2XCT|U Chain U, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
          Length = 692

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 207/496 (41%), Positives = 317/496 (63%), Gaps = 11/496 (2%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +   L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+ 
Sbjct: 201 DFAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMT 260

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
              ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AA
Sbjct: 261 PDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAA 320

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A R+TEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGM
Sbjct: 321 AMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGM 380

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G ++  +  I  +Y  GR
Sbjct: 381 ATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAG-LILGKSGIRRAYETGR 439

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G  ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++ 
Sbjct: 440 GSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSL 499

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L 
Sbjct: 500 RTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALVHYLE 558

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           H++ V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D        +  RF L
Sbjct: 559 HQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKL 618

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E++
Sbjct: 619 SEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIR 678

Query: 484 EIFSKSTDLGRRRTTF 499
           + F        RRT  
Sbjct: 679 DRFGD-----DRRTEI 689


>gi|26554099|ref|NP_758033.1| DNA topoisomerase IV subunit A [Mycoplasma penetrans HF-2]
 gi|26454107|dbj|BAC44437.1| DNA topoisomerase IV subunit A [Mycoplasma penetrans HF-2]
          Length = 1481

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 204/758 (26%), Positives = 365/758 (48%), Gaps = 26/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +   SL   + E +  YA   I++RA+PD+RDG KPV RRI+HAM+E+ +     +K
Sbjct: 5   NDKIWNRSLDDIMSESFGKYAKYIIQDRALPDVRDGLKPVQRRILHAMNELKIHHDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR VGEVIGK HPHGD S+Y+++VR++Q +    PL+  QGN G+IDGDS AA RYTE
Sbjct: 65  KSARTVGEVIGKYHPHGDSSIYEAMVRMSQEWKNNLPLLDMQGNKGSIDGDSPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+++  + IL+ +D++ V F + +++ + EP V PS  PN+L NG +GIA G AT+IP 
Sbjct: 125 CRLSKFGQTILKDIDKNTVKFINNFDDSEQEPTVLPSLLPNILINGATGIAAGYATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            N  E+ +  +  I  PE S+ +L + I GPDFPTGG I++ +E I E Y+ G+G F +R
Sbjct: 185 FNPSEVIDGTIYRILRPESSLAELAKIIKGPDFPTGG-IIQGKEFIQEIYKTGKGKFFIR 243

Query: 254 ARWCVEEVG--RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           A+   E     +    ++V EIPY   KS +++ + E+     +P  +++RD+S ++   
Sbjct: 244 AKIEEEPTKSTKNVKRLIVKEIPYDTNKSAIVKSLDEIKYNNELPGFKEVRDDSDKNGIS 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++   +   D +++   ++  + ++  +     VL   R P    L  IL  ++ H   V
Sbjct: 304 IVLEFDTEKDLEIIKTFLYKKTQLQISYNA-NMVLIKDRKPVQAGLLEILDSFIEHANNV 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQV 428
           + + + + ++    R EI++GL+ A   ID ++ +I++    +     +   F + E Q 
Sbjct: 363 VIKAAQYDLEKSLLRKEIIEGLIKAISEIDVLVNLIKSSVSKEEAKLKIQDYFKVNERQS 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+NLRL  L   +  ++K E + LL   ++ + ++NS   +   I   +   K+ F  
Sbjct: 423 EAIVNLRLYVLTSFDTEKLKKEYEELLEFIKEKELIINSVPYRNKFIVSILENHKKSFG- 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--SVDLSALHFK 546
                +RR+         +      + E+    +V  +             +DLS    K
Sbjct: 482 ----YKRRSLIENEVEELEIETVDIVEERNGTCIVTRDNYIKFIDDVSIEELDLSKAKIK 537

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           + D         T D ++ L+  GK  T+PA  +   +     + +   +  +    T  
Sbjct: 538 DADIPVDIFRLSTLDHLVCLTNRGKMITIPAYKIKMTKLKDNGVHINELITIDSFEKTIL 597

Query: 607 VY------DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            +      D   ++LV +       +   +I ++   K  T++ +    + +     +  
Sbjct: 598 AFGVSKYSDINTEILVATKNSLIKRISLEDINLSKNAKSSTYVSLKGGNDDVVSAYILKK 657

Query: 659 D--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           +   V  V +N     + ID+IP + R   GV+  S KD  +                 +
Sbjct: 658 EYSEVVSVTQNGYATRYKIDEIPLVGRTAAGVKNMSLKDKDLMAFTVPIPKHENFLFFIS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            R   +  +     +  R  +G  + +    +   ++S
Sbjct: 718 NRG-AKRIHINDIVVTSRSKLGKRIFQQIDSNPYIVNS 754


>gi|294790962|ref|ZP_06756120.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
 gi|294458859|gb|EFG27212.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
          Length = 891

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 218/849 (25%), Positives = 362/849 (42%), Gaps = 114/849 (13%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               +++N+    L   +   +LAYA S I  RA+PD RDG KPV RRII+ M EMGL  
Sbjct: 12  DPRTIKQNIVDTPLGEEMSTSFLAYAYSVIYARALPDTRDGLKPVQRRIIYQMGEMGLSP 71

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             ++ KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 72  DKSYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 130

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  + + + E+ VDF   Y+ +  EP V PS  PNLL NG SGIAVGMA
Sbjct: 131 SRYTEARLAPAALGMNESIGEETVDFTPNYDNKLQEPTVLPSAIPNLLVNGASGIAVGMA 190

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ +P  S E L+ Y+ GPD P GG I+  RE I E+Y  GRG
Sbjct: 191 TNMVTHNLGEVVSAAKYLMAHPNASTEDLMTYLPGPDLPGGG-IIMGREGIKEAYTSGRG 249

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
            F  RA   +E V      IVVTE+P+ V   +++E+I+E I  K++  +    D +   
Sbjct: 250 SFLTRAATHIENVTARKKAIVVTELPFMVGPEKVLERISEGIKNKKLEGISGAIDLTDRH 309

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP  ++  +F  + +E  F +N   L     P  M +  +L  W+ H
Sbjct: 310 NGTRLVIEIKTGFDPRAVLGQLFKYTPLEDSFTINNVALV-NGRPHTMGIKELLSVWIEH 368

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           RR V+ RRS +R +  + R+ ++ GLL+A ++IDE+I +IR  D        +++ F L 
Sbjct: 369 RRTVVTRRSEYRKRKAEERLHLVDGLLLALIDIDEVIDVIRTSDDADSAKTRLMAVFDLD 428

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q   IL+LRLR L K+   +++SE D+L     ++D +L+S + +  ++   +    +
Sbjct: 429 QIQAQYILDLRLRRLTKMSRIELESERDDLQRLIAQLDQILSSTQVRDMEVIKSMDRAVQ 488

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMI----------------------------- 515
            +        RRT   +   +                                       
Sbjct: 489 EWDTP-----RRTVLLDQDESGSYVAVPTARSGSGKSESVQAADLAGSSSKNAASSLSVQ 543

Query: 516 ---------------EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA--- 557
                          E +P +++++  G I      + DL     +              
Sbjct: 544 TSALASAQAAGSLELEDKPCSIILTADGLIARSSPAAKDLWESRTEARPRGSHDQIVAII 603

Query: 558 --HTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQDI 602
              T     ++++ G+     + +L +                         + + ++++
Sbjct: 604 RSTTRSSYGIITSHGRMVLAHSADLPNLVLQENLTMEGAVKAQELLHNTQSTESSDDEEV 663

Query: 603 VTAFVY----DSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +T        D+  KLL + + KG             T    + + +  ++++       
Sbjct: 664 ITILPLPSPNDTKIKLLAIGTRKGIVKRWNGD--SPTTMDSWSIIDLKDDDRVVFAAPAD 721

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK---------------------- 693
             D +  +  +  LL +    +    R   G+                            
Sbjct: 722 DTDRLVFISSDSSLLTYEASAVRPQGRNAAGMGGIRLAPHCQVLAFNVIPAGKIAWIDSS 781

Query: 694 -DGGIS--------DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            DG  +          +   I      ++       +           R   G    +  
Sbjct: 782 SDGQEAKSHSLQASGAVVVTIAGDSHALEGTENGSAKVTPLEKFPSKGRNTKGVRSQRFH 841

Query: 745 PRSGKFLSS 753
                 + +
Sbjct: 842 KSENTLIKA 850


>gi|291320112|ref|YP_003515370.1| topoisomerase IV subunit A [Mycoplasma agalactiae]
 gi|290752441|emb|CBH40412.1| Topoisomerase IV subunit A [Mycoplasma agalactiae]
          Length = 861

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 198/737 (26%), Positives = 364/737 (49%), Gaps = 21/737 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             +   +L   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M ++GL     FKK
Sbjct: 14  SKIIRENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQNNKPFKK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD S+YD++VR+ Q +   + L+   GN G+ID D AAA RYTE 
Sbjct: 74  SARVVGDVIGKYHPHGDTSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRYTEV 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  ++  + ++ V F   +++ + EPVV P   PNLL NG++GIA G AT +P H
Sbjct: 134 RLSEIANYVIGDIRKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEMPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +AA+A + NP I + KL + I GPDFPTGG I+   + I E++  G+G   + +
Sbjct: 194 NLNEILDAAIAKVKNPAIELSKLAKIIQGPDFPTGG-IIYGTDGIHEAFERGKGRITLAS 252

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R+ V         I +TEIPY V KS+L+ +I  ++ ++ +  L +++D++  +   +L 
Sbjct: 253 RYSVY-ADNKYKYIEITEIPYGVVKSKLVHEIDLIVDSEEVAGLLEVKDQTDRNGINILI 311

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
             ++  D ++++  +F+ + M   +    NV+     P+ + +  +L  +L H +++  +
Sbjct: 312 TLDKEADENVIVNYLFLKTQMRVYYNY-NNVVIDNYTPKTLGISALLDAYLKHVKDIKIK 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----PKPVMVSRFSLTENQVDA 430
              F +     R+EI+ G L      D++I +IR  +         ++S F  T NQ  A
Sbjct: 371 TIEFDLIKHRERLEIVIGFLKVAKISDKVIEVIRKSENSKQGVIDNLMSAFDFTLNQATA 430

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I  LRL  L K +E     E + L  + ++ + LLN   +    +    +++K  F +  
Sbjct: 431 IAELRLYKLSKTDEQSFLIEKEELEEKIKQCELLLNDSDEFNKYLIALFKDLKVKFGRP- 489

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSALHFKEGD 549
              RR +   E  +A          E+  + +         S K +  + ++    KE D
Sbjct: 490 ---RRTSIENEQIKASINQEDLVKEEQVFLGISKFGYIKKVSKKIYESNLINTYGIKEDD 546

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF- 606
           ++    +A + D++LL +  G    LP   +     +  G  +   +DL   +++V+A  
Sbjct: 547 NILFYDNASSLDKLLLFTNFGNYAYLPVFKVHESKWKEFGTHLSDFVDLASGEELVSAIK 606

Query: 607 --VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVA 662
              +DS+  + + + KG    V   E   +   K    +K+ +++++       G   V 
Sbjct: 607 VSDFDSSNYVCLFTKKGQGKKVLLKEFDVSRFSKTFVAMKLKNDDELIGAKISNGLKDVL 666

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           ++ +N    ++S +++P    +  G +     +          +    + +     +  +
Sbjct: 667 LITKNNFASLYSENEVPIYGLKSNGNKACYLANYDELSAFAV-VSSNDSVVLINANNKAK 725

Query: 722 SENDLLGWLGKRGGVGS 738
             N        +   G 
Sbjct: 726 VVNVSEITKVSKANKGV 742


>gi|300783222|ref|YP_003763513.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
 gi|299792736|gb|ADJ43111.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
          Length = 828

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/765 (29%), Positives = 367/765 (47%), Gaps = 46/765 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L+  +E+ YL YA S I  RA+PD RDG KPVHRRI+++M+E G     A+ KS
Sbjct: 22  QVFENPLKTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILYSMNENGYRPTHAYVKS 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VG+V+GK HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA RYTEAR
Sbjct: 82  SRVVGDVMGKYHPHGDVAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAASRYTEAR 140

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+  A  ++  + ED VDFR  Y+    EP V P+ FPNLL NGTSGIAVGMAT++  HN
Sbjct: 141 MSPEAMQLVGELGEDTVDFRPNYDGSLEEPSVLPAAFPNLLVNGTSGIAVGMATNMIPHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  AA  LI +P  +++KL+E++ GPD PTGG ++   + +  +Y  GRG  R+RA 
Sbjct: 201 LGEVIAAARWLITHPSATLDKLMEFVPGPDLPTGGSLL-GLDEVRRAYETGRGVVRMRAN 259

Query: 256 WCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI-PLLEDIRDESAEDV-RI 311
                 E  RG   I VTE+PY V   ++IEKI + +   +    + D++D +  +    
Sbjct: 260 CETGPLEGSRGRQAITVTELPYGVGPEKVIEKITDEVNKSKRLTGIADVKDLTDRENGTR 319

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++      ++P  L+  ++ L+ +E  F +N  VL     PQ + L  +L+ +L HR +V
Sbjct: 320 LVIECKVGVNPQALLADLYRLTPLEQSFGINNLVLVD-GQPQTLGLKELLEVFLRHRYDV 378

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ +R +  + R+ ++ GLLIA LNID++I +IR  +  +      ++RF L+E Q 
Sbjct: 379 VTRRTKYRRRKREERLHLVDGLLIALLNIDKVIRLIRESENAQAAKDGLMTRFKLSEIQA 438

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L K +  +++SE + L  E  ++  +L+        ++ E+ ++ + F  
Sbjct: 439 TYILDTPLRRLTKYDRLELESEQERLREEIAELSKILDDESVLKKLVSAELAKIAKDFPT 498

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                 RRT   +    +     +         +P  V++S  G +    + S + +   
Sbjct: 499 E-----RRTALIDGDLKEVLAASKPSGPLEVADDPCQVILSATGLVARTAAESEEATETR 553

Query: 545 FKEGDSLKIALHAHTT----DRILLLSTDGKAYT--------LPAGNLLSGRGHGEAIQL 592
            + G     A+ A        +ILL+++ G+A+         LP          G A + 
Sbjct: 554 RRNGRVKHDAVAALVHTTARGQILLVTSRGRAFKTDVLPLPVLPEQAGTVSLRGGMAAKE 613

Query: 593 LIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L+ L   + +V              L + +  G   I                + +   +
Sbjct: 614 LVPLEKGETVVGIAPLGEQAAGSPGLALGTRAGVVKICSPE--WPVRSDEFEVISLKDGD 671

Query: 649 KMKLVV-KVTGDH-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFK 704
           ++        G   +A V     LL ++   +     +G G+   +   D  +      +
Sbjct: 672 EVVGATWLTDGSETLAFVSSEASLLKYAASLVRPQGLKGGGMAGMNLSGDASVVFFGAVR 731

Query: 705 ICEGL----TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +        I + G S  +           R   G    +   
Sbjct: 732 TDDDEHGEPMVITATGLS-VKVTPFSEYPAKGRATGGVRAQRFLK 775


>gi|116071803|ref|ZP_01469071.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. BL107]
 gi|116065426|gb|EAU71184.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. BL107]
          Length = 820

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 238/777 (30%), Positives = 388/777 (49%), Gaps = 48/777 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   +L+ + +D VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPIAHQALLEEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALI  P +S E+LLE I GPDFPTGG ++ S   + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALIRQPSLSDERLLELIPGPDFPTGGEVLLS-SGLQDTYLQGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R     EEV  G        +VVTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHTEEVQLGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R  +PD +++ +   + +++ F   +  L     PQ + L  +L+ +L
Sbjct: 300 DRDGMRVVVELRRDAEPDKVLKDLQRRTALQSNFGAILLALV-NGQPQQLSLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            +R   L RR+S  ++  + R+E+++GL+ A  N+  +IA+I+        +  ++ R  
Sbjct: 359 DYRELTLIRRTSHALRKTEDRLEVVEGLITALNNLQAVIAMIQEAKDAASARASLMVRLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q DA+L + LR L  LE+  ++ E+DNL  E+E++  LL +  Q  + +  E++ +
Sbjct: 419 LNERQADAVLAMPLRRLTGLEQESLRQEVDNLREERERLKLLLENRDQLLDAMVGELKTL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE-------------PITVVISNRGW 529
           K+ FS       RRT   E   A  A    +                     ++I   G 
Sbjct: 479 KKRFSTP-----RRTRLVEGGDALIAERAASQRPNTELLRQQALAALPGDGRLLIQADGQ 533

Query: 530 IRSLKSHSVDLSALHFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           ++ +    +                  ++ L      R+L +S +G+   +        +
Sbjct: 534 VKIVTPQVLGRLHFGDPCPLSDAPSPAQVILPIEPPPRLLAISANGRVALVR-WEFAGQQ 592

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKT 640
                  L   L   + IV              L ++SS G    +  +E++  + +  +
Sbjct: 593 PGVLERFLPSGLE-GEPIVALAPLPMQESSDLSLGLLSSDGRFKRLPLAEVLDLSGRATS 651

Query: 641 FLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG 696
            +K+    ++K  V     H + +V +  ++L   I++  +P M R  +G        G 
Sbjct: 652 VVKLKDGVQLKAAVICREHHDLILVSDIGRMLRLPINEDVLPLMGRLAQGPMTMRLLPGE 711

Query: 697 -ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +   +C       T +  +G+      +       +RG +GS+  +    + +   
Sbjct: 712 QLIGALCPLEP---TVVLVSGQGQFARIDLSSIRSSQRGDLGSMAIQITSDTDRITG 765


>gi|31044070|dbj|BAC76771.1| DNA gyrase A [Treponema denticola]
          Length = 611

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 209/612 (34%), Positives = 333/612 (54%), Gaps = 9/612 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     V  + +   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MEEIQTKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L      +K A+IVG+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD 
Sbjct: 61  LRSSGPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AAYRYTEA+M ++AE +++ + ++ VDF   +++   EP V P+KFP LLANG+SGIAV
Sbjct: 121 PAAYRYTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN++EI +A  A IDNPEI I++L +Y+ GPDFPTGG ++  R+ I ++++ 
Sbjct: 181 GMATNMPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGG-VIYGRKGIKQAFKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG   VR ++ +E   +G   IV TE+PYQV  + L+ +I EL   K I  + ++ DE 
Sbjct: 240 GRGKILVRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDET 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V+    R     +++  +F  + +++ F +    L     P+ + L  ++K +
Sbjct: 300 SDRTGLRVVIELKRGAITKVVLNQLFAKTALQSSFGVINLALV-NGRPETLNLKLLVKYF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRF 421
           + HR +V+ RR+ F ++  + R  IL+ L++A  NIDE+I IIR+   P+     ++ RF
Sbjct: 359 VEHRVDVVTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMERF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              + Q  AI++++L+ L  LE   ++ EL  L      +  LL   ++    I  E  E
Sbjct: 419 GFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNE 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-ITVVISNRGWIRSLKSHSVDL 540
           + E F              E++  D    ++ +I       +        +S        
Sbjct: 479 IAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGS 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
           ++++  E D L     A T D I+ ++  GKAY L    +           I+ L+ ++ 
Sbjct: 539 NSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIKSLLSVSS 598

Query: 599 NQDIVTAFVYDS 610
           +++I        
Sbjct: 599 DEEITAVVSLKE 610



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 10/107 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKLVVKV-TGDHVAVVGEN 667
              ++++S  G    +  +   +  R GK    + ++ ++ +  +    T D++  +   
Sbjct: 508 EEMVILISHLGYIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNA 567

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            K     + +I E SR         +   I  ++     E +T + S
Sbjct: 568 GKAYWLKVHEIQEASRTS-------RGSHIKSLLSVSSDEEITAVVS 607


>gi|291529244|emb|CBK94830.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Eubacterium rectale M104/1]
          Length = 751

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 201/754 (26%), Positives = 364/754 (48%), Gaps = 51/754 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
                  +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++KSARI
Sbjct: 15  QTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARI 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD S+YD++V LAQ F +  PLI G GNFG+I+GD AAA RYTEAR+ +
Sbjct: 75  VGDTMGKYHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQK 134

Query: 139 VAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +   L  +D++ VDF   Y+E + EP V P K PNLL NG  GIAVGMATSIP HN  
Sbjct: 135 ITQEAYLADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFG 194

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +  +A + NP+I+  ++++YI GPDFPTGGI+  +++ +   Y  G+G  ++R R  
Sbjct: 195 EVVDGVIAYMKNPDITTAEMMQYIKGPDFPTGGIVA-NQDDLAAIYETGQGKIKIRGRIE 253

Query: 258 VEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +E+   G   +V+TEIPY +      + +  +  L+ +K    + DI ++S+++   ++ 
Sbjct: 254 IEKGKAGKDKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVL 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + L   ++  + +E  F +   +      P+ + L  I++  +  + E+  R
Sbjct: 314 ELKKGADVEALKNLLYKKTKLEDTFGV-NMLAVANGRPETLGLVPIIRHHVNFQYEIAKR 372

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-------------------- 414
           +    +     + EI +GL+ A   ID II I+R     K                    
Sbjct: 373 KYETLLAKEQEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFKSKA 432

Query: 415 -PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
              M ++   TE Q  AIL +RL  L  LE   +  E +   A+  +   +L        
Sbjct: 433 SEAMAAQLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEHRSSMAK 492

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            I  E++  ++ ++       RRT   E+   ++A + +  +E   + +++   G+++++
Sbjct: 493 VIMKELKAFRKEYA-----RDRRT---ELDNLEEAVVVKKELEVSDVVLLMDRFGYVKTV 544

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
            + + D +       + L   L     D++ + + +G  + +   +L  G+   +   I 
Sbjct: 545 DTSTYDRNKDTADAENKLI--LKVKNIDKLCIFTNNGNMHLVKVLDLPYGKFRDKGTPID 602

Query: 592 LLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            + + + +++    +   +     KL+  +      +V+ +E +  TRK     K+  ++
Sbjct: 603 NVSNYDSSKEDIVFIAPLMDVEKHKLIFGTKSAMIKLVDGAEFV-VTRKTSQATKLMDDD 661

Query: 649 KMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKI 705
           ++  V  ++ +   V+  +    L      IPE  +   GVR     ++  ++D+     
Sbjct: 662 ELLFVDMLSENATMVMRSKKEMFLRIDCGTIPEKKKAAVGVRGMRLDREDELTDIYLLND 721

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            E             +        +  R   G  
Sbjct: 722 QEEKEVEV-----KGKQVALHRLHIANRDTKGVK 750


>gi|295110275|emb|CBL24228.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus obeum A2-162]
          Length = 748

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 203/759 (26%), Positives = 356/759 (46%), Gaps = 49/759 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENV        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 5   QENVIRTDYSEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGRTLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 134 ARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ + + L  +D++ VDF   ++E + EP V P + PN+L NG  GIAVGMATSIP
Sbjct: 125 ARLEKLTQEVFLSDLDKNVVDFVPNFDETEKEPSVLPVRIPNILVNGADGIAVGMATSIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A  A + +  IS+  L+ YI GPDFPTGGI+V +++ + + Y  G G  R+
Sbjct: 185 PHNLGEVIDAVKAYMKDNTISVRGLMRYIKGPDFPTGGIVV-NKDDLRKIYETGSGKIRL 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +  VE++  G   +V+TEIPY +      + +  +A L+  K+   + DI ++S+++ 
Sbjct: 244 RGKVEVEKLKGGKKQLVITEIPYTMLGANIGKFLNDVASLVETKKTTDIVDISNQSSKEG 303

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  D + L   ++  + +E  F +   +      P+ + L  I++  +    
Sbjct: 304 IRIVLELKKDTDVENLTNMLYKKTRLEDTFGV-NMLAVADGRPETLSLKQIIEYHVDFVF 362

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------- 422
           E+  R+    +     + E+ +GL+ A   ID II I+R     + V             
Sbjct: 363 EITTRKYHTLLDKELEKQEVQEGLIKACDVIDLIIEILRGSKNREQVKKCLVEGITEGIK 422

Query: 423 --------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                          TE Q +AIL++RL  L  LE   +++E    +        +L + 
Sbjct: 423 FKSKASEKAAAKLLFTERQANAILDMRLYKLIGLEIEALQAEYQETMKNIALYKDILENY 482

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  ++  +K+ +       +RRT       A++A  ++  +E+  +  ++   G
Sbjct: 483 DSMAAVIIKDMDAIKKEYG-----RKRRTAV---ENAEEAVYEEKKMEEMKVCFLMDRFG 534

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +++ +  ++ + +              +   TD+I + +  GK +T+ A ++   R   +
Sbjct: 535 YMKLIDQNAYERNKEAIHNESKYVF--NCMNTDKICIFTDKGKMHTIKAADIPLVRFRDK 592

Query: 589 AIQLLIDLNHNQDIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                   N+N                T +LL V+      +VE +E     R      K
Sbjct: 593 GTPADNLSNYNSAEEQMLYVAPVGQIRTDRLLFVTKSSMCKLVEGAEFDVAKRT-IASTK 651

Query: 644 VSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++ ++++  +      + + +       L F   +I  M +   GVR     D    +  
Sbjct: 652 LAEDDELIFIGGSAEMEQIVLQSHGGCFLRFLKQEISIMKKTAIGVRGMKLADDDYLEHA 711

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                     I    + Y    +     L KR   G   
Sbjct: 712 YLLAGHQEYTITYHDKEY----SLNKVHLAKRDTKGVKP 746


>gi|302866556|ref|YP_003835193.1| DNA topoisomerase [Micromonospora aurantiaca ATCC 27029]
 gi|302569415|gb|ADL45617.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora aurantiaca ATCC
           27029]
          Length = 829

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 220/765 (28%), Positives = 363/765 (47%), Gaps = 46/765 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L   + + YL YA S I  RA+PD RDG KPVHRRI+ +M E G        KS
Sbjct: 22  RVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMHEQGHRPDRGHVKS 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA RYTEAR
Sbjct: 82  ARIVGDVMGKYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAARYTEAR 140

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++ A L+   + ED VD    Y+   ++P V P+ FPNLL NG SGIAVGMAT++  HN
Sbjct: 141 MSREAMLLTGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA  LI++P+ +++KL+E++ GPD PTGG+++   + +  +Y  GRG  R+R R
Sbjct: 201 LGEVVQAARWLINHPDATLDKLMEFVPGPDLPTGGLLLG-LDEVRRAYETGRGVVRMRGR 259

Query: 256 WCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI-PLLEDIRDESAEDV-RI 311
             +   E  RG   I VTE+PY V   ++I  I   +   +    + D++D +  +    
Sbjct: 260 VEIGPLEGSRGRQAITVTELPYGVGAEKVIAAITNEVNKTKRLTGIADVKDLTDRENGTR 319

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++      ++P  L+  ++ L+ +E  F +N  VL     P+ + L  +L  +LAHR EV
Sbjct: 320 LVVECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVD-GQPRTLGLKELLDVFLAHRYEV 378

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RRSS+R +  + R+ ++ GLLIA L+ID ++ +IR  +  +      + RF L+E Q 
Sbjct: 379 VTRRSSYRKRKREERLHLVDGLLIALLDIDRVVKLIRASEDAQAAKDGLMQRFKLSEIQA 438

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L K +  ++++E + L  E  ++  +L+  K     ++ E+  V + F  
Sbjct: 439 TYILDTPLRRLTKYDRLELEAEQEKLRGEIAELSKILDDEKVLRKVVSDELAAVVKQFGA 498

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                 RRTT  +    +               +P  V++S  G +    + S + +   
Sbjct: 499 P-----RRTTLVDGDLKEVLAASVPAGPLEVADDPCQVILSATGLVARTAAESEEAAEAR 553

Query: 545 FKEGDSLKIALHAHTTD----RILLLSTDGKAYTLPA--------GNLLSGRGHGEAIQL 592
            + G     A+ A        R+LL+++ G+A+ +           +       G +   
Sbjct: 554 RRSGRVKHDAVRAIVHSTARGRVLLVTSAGRAFKIDVLPLPVLPEQSGTVSLRGGMSAAE 613

Query: 593 LIDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L+ L   + +V       + +    L + +  G   +                + +   +
Sbjct: 614 LVPLEPGETVVGLAPLGPSAQGSPGLALGTRAGVVKVCAPD--WPVRSDEFEVISLRDGD 671

Query: 649 KMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKI 705
           ++     +T   + +A V     LL F+   +     +G G+   +   G  +       
Sbjct: 672 EVIGATWLTDGAETLAFVSSEASLLRFAASVVRPQGLKGGGMAGINLPAGARAVFFGAIR 731

Query: 706 CEGL-----TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +         + S G +  +           R   G    +   
Sbjct: 732 TDDSKHGEPMVVTSTG-ATVKVTPFKAYPAKGRATGGVRAQRFLK 775


>gi|50954717|ref|YP_062005.1| DNA topoisomerase IV subunit A [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951199|gb|AAT88900.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 823

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 224/779 (28%), Positives = 368/779 (47%), Gaps = 48/779 (6%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
              ++     E ++ V +   ++  +L YA S I  RA+PD RDG KPV RRI++ M+EM
Sbjct: 2   TPPDNQAPATERIEDVDVTTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMTEM 61

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL       KSAR+ GEV+GKLHPHGD ++Y++LVR+AQ F  R PLI G GNFG++D D
Sbjct: 62  GLRPDRGHVKSARVTGEVMGKLHPHGDSAIYEALVRMAQDFTLRVPLIDGHGNFGSLD-D 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+   A  +   +DED VDF   Y+ +  +P V P+ FPNLL NG SGIA
Sbjct: 121 GPAAARYTEARLAAAALALTGDLDEDVVDFVPNYDNQLMQPDVLPAAFPNLLVNGASGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++  HN+ E+  AA  L+DNP+ +++ L+ YI GPD P+GG I      + ++Y 
Sbjct: 181 VGMATNMAPHNLVEVVGAARHLLDNPDATLDDLMAYIPGPDLPSGGAIA-GLSGVRDAYA 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG FR+RA+  +E +      +VVTE+PY V   R+IEKI + + AK++  + D+ D 
Sbjct: 240 TGRGSFRMRAKVGIEPITARKNGLVVTELPYGVGPERVIEKIKDGVSAKKLKGISDVTDL 299

Query: 305 SAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S       ++        P+ ++E ++  + +E  F +N   L  G  PQ + L  +L  
Sbjct: 300 SDRKHGLRLIIGVKTGFSPEAVLEQLYRHTPLEEGFSINSVALVEGG-PQTLGLRELLSV 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSR 420
           +L HR  V+ RRS FR+     R+ +++GLL+A L+IDE I +IR+ D        ++  
Sbjct: 359 YLGHRIRVVTRRSEFRLARRKERLHLVEGLLVAILDIDEAIQVIRSSDDTDQARSRLMQV 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+  Q D IL LRLR L +    ++++E D L AE  ++++LL S       ++ E+ 
Sbjct: 419 FDLSTLQADYILELRLRRLTRFSRIELEAERDQLRAEIAELEALLASRSLINALVSDELE 478

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ------QAMIEKEPITVVISNRGWIRSLK 534
           +V   F        RRT   E   +  +T +      Q  +   P  V +S  G I  + 
Sbjct: 479 QVAATFGTP-----RRTLLTEAKPSIASTSRGKAAAAQLEVADVPCRVFLSTTGRILRVD 533

Query: 535 SHSVDLSALHFKEGDSLKIALHAH-------TTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           + +   + L   +    +    A        +   I  ++  G+       +L +   + 
Sbjct: 534 AGTEQDTGLDRIQPPVRRSKHDAILSRLDTTSHSEIGAVTNRGRLLRFSPVDLPAAPPNS 593

Query: 588 EAIQLLIDL-------NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             +   + +       +  + I+     DS   + + + +G    V   +  +  +    
Sbjct: 594 IQLGAGVKVGDYLALADKKERILALVSLDSPKPIALGTRQGVVKRVAPGDWAS--KPEFE 651

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
            + + + +++         D +  V  + +LL F    +    R   G+   +   G   
Sbjct: 652 IIGLKAGDEVVGAAHTEDTDELVFVASDSQLLRFPAASVRPQGRAAGGMAGIALAPGARV 711

Query: 699 ---DVICFKICE---------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                +     +             +  +     +  +        R   G    +   
Sbjct: 712 IFFGSVSATEKDTAVVVTVAVSDQTLPGSDPGSGKVSDFAEFPAKGRATGGVRSQRFLK 770


>gi|31044068|dbj|BAC76770.1| DNA gyrase A [Treponema denticola]
          Length = 611

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 207/612 (33%), Positives = 330/612 (53%), Gaps = 9/612 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     V  + +   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MEEIQTKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L      +K A+IVG+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD 
Sbjct: 61  LRSSGPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIFPQGNFGTIGGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AAYRYTEA+M ++AE +++ + ++ VDF   +++   EP V P+KFP LLANG+SGIAV
Sbjct: 121 PAAYRYTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN++EI +A  A IDNPEI I++L +Y+ GPDFPTGG ++  R+ I ++++ 
Sbjct: 181 GMATNMPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGG-VIYGRKGIKQAFKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG   VR ++ +E   +G   IV TE+PYQV  + L+ +I EL   K I  + ++ DE 
Sbjct: 240 GRGKILVRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDET 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      ++    R     +++  +F  + +++ F +    L     P+ + L  ++K +
Sbjct: 300 SDRTGLRIVIELKRGAITKVVLNQLFAKTALQSSFGVINLALV-NGRPETLNLKLLVKYF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRF 421
           + HR +V+ RR+ F ++  + R  IL+ L++A  NIDE+I IIR     +      + RF
Sbjct: 359 VEHRVDVVTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRASRDTQTAKNSLMERF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              + Q  AI++++L+ L  LE   ++ EL  L      +  LL   ++    I  E  E
Sbjct: 419 GFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNE 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-ITVVISNRGWIRSLKSHSVDL 540
           + E F              E++  D    ++ +I       +        +S        
Sbjct: 479 IAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGS 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNH 598
           ++++  E D L     A T D I+ ++  GKAY L    +           I+ L+ ++ 
Sbjct: 539 NSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIKSLLSVSS 598

Query: 599 NQDIVTAFVYDS 610
           +++I        
Sbjct: 599 DEEITAVVSLKE 610



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 10/107 (9%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKLVVKV-TGDHVAVVGEN 667
              ++++S  G    +  +   +  R GK    + ++ ++ +  +    T D++  +   
Sbjct: 508 EEMVILISHLGYIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNA 567

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            K     + +I E SR         +   I  ++     E +T + S
Sbjct: 568 GKAYWLKVHEIQEASRTS-------RGSHIKSLLSVSSDEEITAVVS 607


>gi|238924636|ref|YP_002938152.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
 gi|238876311|gb|ACR76018.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
          Length = 751

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 200/754 (26%), Positives = 364/754 (48%), Gaps = 51/754 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
                  +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++KSARI
Sbjct: 15  QTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARI 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD S+YD++V LAQ F +  PLI G GNFG+I+GD AAA RYTEAR+ +
Sbjct: 75  VGDTMGKYHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQK 134

Query: 139 VAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +   L  +D++ VDF   Y+E + EP V P K PNLL NG  GIAVGMATSIP HN  
Sbjct: 135 ITQEAYLADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFG 194

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +  +A + NP+I+  ++++YI GPDFPTGGI+  +++ +   Y  G+G  ++R R  
Sbjct: 195 EVVDGVIAYMKNPDITTAEMMQYIKGPDFPTGGIVA-NQDDLAAIYETGQGKIKIRGRIE 253

Query: 258 VEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +E+   G   +V+TEIPY +      + +  +  L+ +K    + DI ++S+++   ++ 
Sbjct: 254 IEKGKAGKDKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVL 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + L   ++  + +E  F +   +      P+ + L  I++  +  + E+  R
Sbjct: 314 ELKKGADVEALKNLLYKKTKLEDTFGV-NMLAVANGRPETLGLVPIIRHHVNFQYEIAKR 372

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-------------------- 414
           +    +     + EI +GL+ A   ID II I+R     K                    
Sbjct: 373 KYETLLAKEQEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFKSKA 432

Query: 415 -PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
              M ++   TE Q  AIL +RL  L  LE   +  E +   A+  +   +L        
Sbjct: 433 SEAMAAQLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEHRSSMAK 492

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            I  E++  ++ ++       RRT   E+   ++A + +  +E   + +++   G+++++
Sbjct: 493 VIMKELKAFRKEYA-----RDRRT---ELDNLEEAVVVKKELEVSDVVLLMDRFGYVKTV 544

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
            + + D +       + L   L     D++ + + +G  + +   +L  G+   +   I 
Sbjct: 545 DTSTYDRNKDTADAENKLI--LKVKNIDKLCIFTNNGNMHLVKVLDLPYGKFRDKGTPID 602

Query: 592 LLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            + + + +++    +   +     KL+  +      +V+ +E +  TRK     K+  ++
Sbjct: 603 NVSNYDSSKEDIVFIAPLMDVEKHKLIFGTKSAMIKLVDGAEFV-VTRKTSQATKLMDDD 661

Query: 649 KMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKI 705
           ++  V  ++ +   V+  +    L      IPE  +   GVR     ++  ++D+     
Sbjct: 662 ELLFVDMLSENATMVMRSKKEMFLRIDCGTIPEKKKAAVGVRGMRLDREDELTDIYLLND 721

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            +             +        +  R   G  
Sbjct: 722 QDEKEVEV-----KGKQVALHRLHIANRDTKGVK 750


>gi|2463534|dbj|BAA22542.1| DNA gyrase subunit A [Streptococcus thermophilus]
          Length = 545

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 212/551 (38%), Positives = 331/551 (60%), Gaps = 12/551 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+      K
Sbjct: 3   DNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG +V  +  I  +Y  G+G   +R
Sbjct: 183 HNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGG-LVMGKSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +    +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F L+ ++T F  NM  +    VP+++ L  IL +++AH++EV+ 
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEK-GVPKILSLRQILADYIAHQKEVVV 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ F     + R  IL+GLLIA  ++DE+I IIRN           ++RF LTE Q  A
Sbjct: 361 RRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQSQA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RLR L  LE  +I++E D+LLA    +  +L   ++    I  E+ E K  F+ + 
Sbjct: 421 ILDMRLRRLTGLERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESKRKFADA- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               RRT    +     +   + +IE+E + + +SN+G+I+ L            +    
Sbjct: 480 ----RRTEL--MVGEVVSLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRGVQG 533

Query: 551 LKIALHAHTTD 561
             +       D
Sbjct: 534 TGVNDDDFVRD 544



 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            I  + + Y +          KRGG G 
Sbjct: 504 VITLSNKGYIKRLAQDEFRSQKRGGRGV 531


>gi|153813001|ref|ZP_01965669.1| hypothetical protein RUMOBE_03408 [Ruminococcus obeum ATCC 29174]
 gi|149830948|gb|EDM86038.1| hypothetical protein RUMOBE_03408 [Ruminococcus obeum ATCC 29174]
          Length = 748

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 202/759 (26%), Positives = 347/759 (45%), Gaps = 49/759 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENV        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 5   QENVIRTDYSEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGRTLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 134 ARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ + + L  +D++ VDF   ++E + EP V P + PN+L NG  GIAVGMATSIP
Sbjct: 125 ARLEKLTQDVFLSDLDKNVVDFVPNFDETEKEPSVLPVRIPNILVNGADGIAVGMATSIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A  A + +  IS++ L+ YI GPDFPTGGI+V +++ + + Y  G G  R+
Sbjct: 185 PHNLGEVIDAVKAYMKDNTISVKGLMRYIKGPDFPTGGIVV-NKDDLHKIYETGSGKIRL 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +  VE++  G   +V+TEIPY +      + +  +A LI  K+   + DI ++S+++ 
Sbjct: 244 RGKVEVEKLKGGRKQLVITEIPYTMLGANIGKFLNDVASLIETKKTTDIVDISNQSSKEG 303

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  D + L   ++  + +E  F +   +      P+ + L  I++  +    
Sbjct: 304 IRIVLELKKDTDVENLTNMLYKKTRLEDTFGV-NMLAVADGRPETLSLKQIIEYHVDFVF 362

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------- 422
           E+  R+    +     + E+ +GL+ A   ID II I+R     + V             
Sbjct: 363 EITTRKYHTLLDKELEKQEVQEGLIKACDVIDLIIEILRGSKNREQVKKCLVEGITEGIK 422

Query: 423 --------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                          TE Q +AIL++RL  L  LE   +++E +  +        +L++ 
Sbjct: 423 FKSKASEKAAAKLLFTERQANAILDMRLYKLIGLEIEALQAEHEETMKNIALYKDILDNY 482

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  ++  +K+ +       +RRT       A     +        + V      
Sbjct: 483 DSMAAVIIKDMDAIKKEYG-----RKRRTAIENAEEAVYEEKKMEE-----MEVCFLMDR 532

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +                   +  K   +   TD+I + +  GK +T+ A ++  GR   +
Sbjct: 533 FGYMKLIDKNAYERNKEAVHNENKYVFNCMNTDKICIFTDTGKMHTIKAVDIPLGRFRDK 592

Query: 589 AIQLLIDLNHNQDIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              +    N++                + +LL V+      +VE +E     R      K
Sbjct: 593 GTPVDNLSNYDSSQERMLYVAPVGQLRSDRLLFVTKTSMCKLVEGAEFDVAKRT-IASTK 651

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++ E+++  +   +  + + +       L F   ++  M +   GVR     D    +  
Sbjct: 652 LADEDELIFIGSASEMEQIVLQSHGGCFLRFLAQEVSTMKKTALGVRGMKLADDDYLEHA 711

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                     I    + Y          L KR   G   
Sbjct: 712 YLLAGHQEYTISYHDKEY----ALNKVRLAKRDTKGIKP 746


>gi|291525297|emb|CBK90884.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Eubacterium rectale DSM 17629]
          Length = 751

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 201/754 (26%), Positives = 364/754 (48%), Gaps = 51/754 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
                  +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++KSARI
Sbjct: 15  QTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARI 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD S+YD++V LAQ F +  PLI G GNFG+I+GD AAA RYTEAR+ +
Sbjct: 75  VGDTMGKYHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQK 134

Query: 139 VAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +   L  +D++ VDF   Y+E + EP V P K PNLL NG  GIAVGMATSIP HN  
Sbjct: 135 ITQEAYLADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFG 194

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +  +A + NP+I+  ++++YI GPDFPTGGI+  +++ +   Y  G+G  ++R R  
Sbjct: 195 EVVDGVIAYMKNPDITTAEMMQYIKGPDFPTGGIVA-NQDDLAAIYETGQGKIKIRGRIE 253

Query: 258 VEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +E+   G   +V+TEIPY +      + +  +  L+ +K    + DI ++S+++   ++ 
Sbjct: 254 IEKGKAGKDKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVL 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + L   ++  + +E  F +   +      P+ + L  I++  +  + E+  R
Sbjct: 314 ELKKGADVEALKNLLYKKTKLEDTFGV-NMLAVANGRPETLGLVPIIRHHVNFQYEIAKR 372

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-------------------- 414
           +    +     + EI +GL+ A   ID II I+R     K                    
Sbjct: 373 KYETLLAKEQEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFKSKA 432

Query: 415 -PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
              M ++   TE Q  AIL +RL  L  LE   +  E +   A+  +   +L        
Sbjct: 433 SEAMAAQLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEHRSSMAK 492

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            I  E++  ++ ++       RRT   E+   ++A + +  +E   + +++   G+++++
Sbjct: 493 VIMKELKAFRKEYA-----RDRRT---ELDNLEEAVVVKKELEVSDVVLLMDRFGYVKTV 544

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
            + + D +       + L   L     D++ + + +G  + +   +L  G+   +   I 
Sbjct: 545 DTSTYDRNKDTADAENKLI--LKVKNIDKLCIFTNNGNMHLVKVLDLPYGKFRDKGTPID 602

Query: 592 LLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            + + + +++    +   +     KL+  +      +V+ +E +  TRK     K+  ++
Sbjct: 603 NVSNYDSSKEDIVFIAPLMDVEKHKLIFGTKSAMIKLVDGAEFV-VTRKTSQATKLMDDD 661

Query: 649 KMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKI 705
           ++  V  ++ +   V+  +    L      IPE  +   GVR     ++  ++D+     
Sbjct: 662 ELLFVDMLSENATMVMRSKKEMFLRIDCGTIPEKKKAAVGVRGMRLDREDELTDIYLLYD 721

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            E             +        +  R   G  
Sbjct: 722 QEEKEVEV-----KGKQVALHRLHIANRDTKGVK 750


>gi|312877898|ref|ZP_07737843.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795324|gb|EFR11708.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 473

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 193/467 (41%), Positives = 299/467 (64%), Gaps = 5/467 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSRIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+DN   +++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DIRDES ++   ++  
Sbjct: 246 TTIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L     P+V+ L  +L  ++ H++EV+ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVD-NQPKVLTLMDMLNLYIEHQKEVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+             RF  TE Q  AIL
Sbjct: 365 TRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISRFQFTEAQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I    
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIRMIEYYKNVLASDAMVKEIIKKRF 471


>gi|260589533|ref|ZP_05855446.1| DNA gyrase subunit A [Blautia hansenii DSM 20583]
 gi|331082961|ref|ZP_08332081.1| hypothetical protein HMPREF0992_01005 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540101|gb|EEX20670.1| DNA gyrase subunit A [Blautia hansenii DSM 20583]
 gi|330399956|gb|EGG79614.1| hypothetical protein HMPREF0992_01005 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 748

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 211/760 (27%), Positives = 368/760 (48%), Gaps = 49/760 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN+        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   +
Sbjct: 4   IQENIIRTEYSEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y++LV +AQ F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 64  RKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMRYT 123

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ ++ + + L  +D+  VDF   ++E + EP V P K PNLL NG  GIAVGMATSI
Sbjct: 124 EARLQKITQEVYLSDMDKQVVDFLPNFDETEKEPEVLPVKIPNLLVNGADGIAVGMATSI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A +A + N EI++ +L+EYI GPDFPTGGI+V +++ ++  Y  G G  +
Sbjct: 184 PPHNLGEVIDAVIAYMKNNEITVRELMEYIKGPDFPTGGIVV-NKDDLLSIYETGTGKIK 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R +  VE+   G   +V+TEIPY +      + +  +A L  +K+   + DI ++S+++
Sbjct: 243 IRGKVEVEKGKNGKSLLVITEIPYTMIGANIGKFLNDVAALSESKKTTDIVDIANQSSKE 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  D + L   ++  + +E  F +   +      P+ + L  I++  +  +
Sbjct: 303 GIRIVIELKKGADVENLKNMLYKKTRLEDTFGV-NMLAVADGKPETLSLKQIIEHHVDFQ 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-------------- 414
            ++  R+ +  +       E+ +GL+ A   ID II I+R     +              
Sbjct: 362 FDIATRKYTSLLAKERENQEVQEGLIKACDVIDLIIEILRGSKSREQVKKCLIYGETEGI 421

Query: 415 -------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                       +   TE Q  AIL++RL  L  LE   + +E +  + +    + +LN+
Sbjct: 422 HFKTKTSERQAKKLHFTERQATAILDMRLYKLIGLEIETLMAEHEETMKKIALYEDILNN 481

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                  I  E+++VK+ +S       RRT       A +A  ++  IE+  +  ++   
Sbjct: 482 YSSMSKVIIKELQKVKKEYS-----RVRRTVV---ENAAEAVYEEKKIEEMEVVFLMDRF 533

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           G+ R++   + +            K  L    T +I L +  G+ YT+    L  G+   
Sbjct: 534 GYARTIDKSTYER--NKETADSENKYVLTCMNTGKICLFTDAGRMYTIKVQELPFGKFRD 591

Query: 588 E--AIQLLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           +   +  + + +   + +      +      L  V++KG   +VE  E     R   +  
Sbjct: 592 KGIPVDNVSNYDSAAEQIVFVGSMADIIHTTLCFVTAKGMVKLVEGKEFDVAKRT-ISST 650

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           K++ E+ + +V      +H+ +  +    L F   +IP   +   GVR     +    + 
Sbjct: 651 KLAEEDSIVMVQNAEAMEHLVLQTKEGYFLKFLKAEIPYKKKTALGVRGIKMNESDCVEH 710

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                      I        ++       LGKR   G+  
Sbjct: 711 AYMLENRTEYPISYKE----KTLVLNKLKLGKRDTKGTKT 746


>gi|313640117|gb|EFS04738.1| DNA gyrase, A subunit [Listeria seeligeri FSL S4-171]
          Length = 592

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 222/597 (37%), Positives = 354/597 (59%), Gaps = 20/597 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+H++ E+ +  LAL ++P+ISI +L+EYI GPDFPT G+I   R  I  +Y  GRG  
Sbjct: 183 IPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMI-MGRSGIRRAYESGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES     
Sbjct: 242 TVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ 
Sbjct: 302 RIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVD-NHPKVLNLKEILYYYLEHQKV 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQ 427
           V+ RR+ F ++  + R  IL+GL IA  NID II +IR           ++++F+L++ Q
Sbjct: 361 VIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++
Sbjct: 421 AQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYA 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                 +RRT     +    +   + +I +E + + ++ RG+I+          +     
Sbjct: 481 D-----KRRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           +  +   E D ++  +   T D +L  +  GK Y      +       + I ++  L
Sbjct: 534 IQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLL 590



 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 615 LVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK-LVVKVTGDHVAVVGENRKLL 671
           + ++ +G    +  S   +  R  +G   +    ++ ++ LV   T D +       K+ 
Sbjct: 508 ITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567

Query: 672 IFSIDQIPEMSR-GKGVRLQSY 692
                ++PE  R  KG+ + + 
Sbjct: 568 RSKGYEVPEYGRTAKGIPIINL 589



 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 36/120 (30%), Gaps = 14/120 (11%)

Query: 631 IIANTRKGKTF---LKVSSEEKMKLVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSRG-K 685
                R        + +  E+       +  + VA+ + +   +    +       RG +
Sbjct: 479 YADKRRTEILAGDLVSLEDED------LIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGR 532

Query: 686 GVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           G++  S  +D  +  ++     + L +  + G+ Y             R   G  +    
Sbjct: 533 GIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVY--RSKGYEVPEYGRTAKGIPIINLL 590



 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 7/57 (12%)

Query: 689 LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           L S +D  +       I E    I    R Y +          +RGG G        
Sbjct: 492 LVSLEDEDL-------IPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHE 541


>gi|291546805|emb|CBL19913.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus sp. SR1/5]
          Length = 748

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 210/759 (27%), Positives = 359/759 (47%), Gaps = 49/759 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 5   QDNIIRTDYAEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGRTLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 134 ARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ + + L+ +D++ VDF   ++E + EPVV P + PNLL NG  GIAVGMATSIP
Sbjct: 125 ARLEKLTQEVFLEDLDKNVVDFMPNFDETEKEPVVLPVRIPNLLVNGADGIAVGMATSIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A  A + N +IS   L+ Y+ GPDFPTGGI+V +++ +V+ Y  G G  R+
Sbjct: 185 PHNLGEVVDAVKAYMKNNDISTRGLMRYLKGPDFPTGGIVV-NKDDLVKIYESGTGKLRI 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R R  +E++  G   +V+TEIPY +      + +  IA L+  K+   + DI ++S+++ 
Sbjct: 244 RGRVEIEKLKGGRQQLVITEIPYTMIGANIGKFLNDIATLVETKKTTDIVDISNQSSKEG 303

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  D + L   ++  + +E  F +   +      P+ + L  I+   +    
Sbjct: 304 IRIVLELKRDADVENLTNMLYKKTRLEDTFGV-NMLAVADGRPETLGLKQIIAHHVDFVF 362

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------- 419
           EV  R+ +  +     + EI +GL+ A   ID II I+R       V             
Sbjct: 363 EVNSRKYTTLLAKEQEKREIQEGLIKACDVIDLIIEILRGSKSRDQVKKCLTDGITEGIK 422

Query: 420 -----------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                          TE Q  AIL++RL  L  LE   +  E +  +      + +LN+ 
Sbjct: 423 FKTKTSEKAAKTLKFTEKQAAAILDMRLYKLIGLEIDALMKEHEETMKNIAAYEDILNNY 482

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  E+ ++K+ +       +R+T+      A++A  ++  +E+  +  ++   G
Sbjct: 483 DSMAAVIMGELDQIKKEYG-----SKRKTSI---ENAEEAVYEEKKMEETEVCFLMDRFG 534

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           ++R +  ++ + +                  TD+I + +  GK +T+ A ++   R   +
Sbjct: 535 YMRLIDKNAYERNKDAAHAESRYVF--TCMNTDKICIFTDTGKLHTVKAEDIPLVRFRDK 592

Query: 589 --AIQLLIDLNHN-QDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                 L + +   + I+        +   +L V+  G   +V+  E  A+ R      K
Sbjct: 593 GVPADNLGNYDSTSEQILYVAPLSQVAASTVLFVTENGMCKLVKGDEFRASKRT-IVSTK 651

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           ++ ++++  V      D V    E    L     +I    +   GVR             
Sbjct: 652 LAEDDRLVFVGAADEMDQVVFQSEKGYFLRIMKTEISVTKKNAMGVRGMKLTGEDRIHHA 711

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                     I    + Y  +       L KR   G   
Sbjct: 712 YLLESRQEYAITYHDKPYVLN----KVKLAKRDTKGVKP 746


>gi|291563504|emb|CBL42320.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [butyrate-producing bacterium SS3/4]
          Length = 748

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 209/765 (27%), Positives = 366/765 (47%), Gaps = 58/765 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ YL Y++S I  RAIPD RDG KPV RR+++ MSE+ LD     
Sbjct: 1   MSEKILRTEYSEEMQKSYLDYSMSVITSRAIPDARDGLKPVQRRVLYDMSELHLDHDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV L+Q F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ + AE + L+ +D+  VDF   Y+E + EP V P + PNLL NG  GIAVGM+TSI
Sbjct: 121 EARLKKFAEEVYLKDLDK-TVDFVSNYDETEKEPEVLPVRVPNLLVNGAEGIAVGMSTSI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A IDN  +++E+L++Y+ GPDFPTGGII  ++  +++ Y  G G  R
Sbjct: 180 PPHNLGEVIDAVKAYIDNRLLTVEELMQYMPGPDFPTGGIIA-NKGDLLQIYETGAGKIR 238

Query: 252 VRARWCVE--EVGRGSWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R R  VE          +V+TEIPY +     ++ +  +A+L+  +++  + DI ++S+
Sbjct: 239 LRGRIEVELGRRKADRDKLVITEIPYTMIGAGINKFLMDVADLVETRKLTDVVDISNQSS 298

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    +  D + +   ++  + +E  + +NM  +     P+ M L  IL  +L 
Sbjct: 299 KEGIRIVLELKKDADVNRIKAILYKKTKLEDTYGVNMLAID-EGRPETMNLKQILNTFLE 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF----- 421
            +   + ++ +  +Q    + E+ +GL+ A   ID IIA++R     K            
Sbjct: 358 FQYRNMTKKYNVLLQKEMEKKEVQEGLIEACDVIDLIIAVLRGSKNMKDAKECLMTGNTE 417

Query: 422 ----------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                             TE Q  AIL +RL  L  LE   ++      L +  +   +L
Sbjct: 418 KIKFRVPGFEADAKNLHFTERQATAILEMRLYKLIGLEILALQKAYKETLRKIREYKHIL 477

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           ++ K     I  ++  +K  F++      RRT   +    ++    +A  E + +  V+ 
Sbjct: 478 SNQKNMDVVIKEDLDSIKAEFAEP-----RRTLIED---GEEMVYVEAKEEAKEVIFVMD 529

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
             G+ +++     + +       +     L   T D++ + S  G  Y +          
Sbjct: 530 RFGYCKTMDRSIYERNQETVDSENVWV--LPVMTDDKLCMFSDTGNMYQVKVAEFPTLKM 587

Query: 584 RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
           +  G  I+ +   +   + +         +  K L  +++    IV   E I   +    
Sbjct: 588 KDKGIPIENVSKFDGKTETILFMLPASGFTGKKFLFATAQAAVKIVPGEEFITANKT-VV 646

Query: 641 FLKVSSEEKMKLVVKVTGD-----HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
             K++ E+K+  + ++  +      V +   +   L F +++IPE+ +  +GVR    + 
Sbjct: 647 ATKLAGEDKLTEIREIGTEIDGTRDVVLQTVDGMFLKFQLEEIPELKKNSRGVRGIRLEK 706

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
               + +     +G            +        + KR G G+ 
Sbjct: 707 EDTLEHVYLPDMDGTAV------YKGKEVALGRLKVAKRDGKGTK 745


>gi|228983129|ref|ZP_04143388.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
 gi|228777312|gb|EEM25620.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
          Length = 740

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 219/756 (28%), Positives = 375/756 (49%), Gaps = 48/756 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   ++ +S    ++  ++ YAL+ + +RA+PD+RDG KPVHRRI++AM ++G+    A+
Sbjct: 1   MGGKIETISYSKEMKSSFIDYALTVVTDRALPDVRDGLKPVHRRILYAMGDLGMYPDKAY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEVIGK HPHGD +VY+S+V+ AQ FV+  PLI G GNFG++DGDSAAA RYT
Sbjct: 61  KKSARIVGEVIGKYHPHGDSAVYESMVKQAQDFVKNAPLIDGHGNFGSVDGDSAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ VA  ++Q + +  VDFRD ++  + EPVV P+K PNLL NG  GIAVGMA   P
Sbjct: 121 EARLSPVAMEMIQDLSKGVVDFRDNFDASEREPVVLPAKVPNLLVNGGVGIAVGMAYKTP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H V  + +  +A  D  +I IE L++ I  PD+P+GGII  ++  + + YR G G   +
Sbjct: 181 PHGVNSVVDTLIAYADKQDIDIESLIDIIEAPDYPSGGIIT-NKNELRDLYRTGIGKAVI 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RA+  +E+ G G   +VV EIPY     K+ L  K+  ++I K++  + ++ DES +D  
Sbjct: 240 RAKIDIEDAGYGRKNLVVKEIPYPYSGSKTNLTYKLITMVIEKKLEEIVNVTDESDKDGI 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + +D D L+  ++  + +++       VL    VP  + L    K +   ++E
Sbjct: 300 RIVLEVKKGVDIDNLLNKLYSKTPLQSSESYQYLVLV-NGVPTTINLKDYCKHYFDFQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------------- 411
           +  +R  + +     R EIL+GL+ A   +D II ++R                      
Sbjct: 359 ITRKRYEYLLSKAQVRKEILEGLVKAEEMMDTIIEMLRGAKKSKEAKVCLMEGNTESISF 418

Query: 412 --KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
             K    +  +F+ TE Q  AIL++RL+ L  LE  Q+  E   +LAE E+ + +L S K
Sbjct: 419 KTKKHENIAKKFAFTEKQAQAILDMRLQKLIGLEVEQLNQEYKEVLAEMEEYELVLGSEK 478

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I   +R  K+ F        RRT   E          + + E +   V +    +
Sbjct: 479 EMLKVIKKYLRGFKKDFG-----RERRTEIQEKKT------IEYVEEIKEEDVWVLIDKF 527

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
             +    ++ +     +     K  +    T ++ + +  G+ Y +   ++   +   + 
Sbjct: 528 GYTKSVDTISVERSSEETLSEYKQEILTKNTSKLSVFTNQGRLYQIKLADIPKVKIKDKG 587

Query: 590 IQLL----IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           + +     +  N     +T      T ++++++  G       SE+I+ +R      K+ 
Sbjct: 588 VPIQRLGKMKKNEYPLYITTNTELETERVIMLTKTGLIKQTLCSELIS-SRSVVVATKLE 646

Query: 646 SEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            ++++  +  +    + V V  +   +L FSI++IP + +  KGV+  S  +  + + + 
Sbjct: 647 EDDEVIQITPINEVDEDVLVFSKKGYILRFSINEIPVLRKNAKGVKAVSLMEEDVIEGVY 706

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
                         +   +           RG  G 
Sbjct: 707 ILNENNKDV----KQLNGKQIELSKVERKTRGKKGI 738


>gi|332755278|gb|EGJ85642.1| DNA gyrase, A subunit [Shigella flexneri K-671]
          Length = 784

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 212/698 (30%), Positives = 324/698 (46%), Gaps = 48/698 (6%)

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 1   MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 60

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +ISIE L+E+
Sbjct: 61  TEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEH 120

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQK 279
           I GPDFPT   I+  R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV K
Sbjct: 121 IPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNK 179

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           +RLIEKIAEL+  KR+  +  +RDES +D   ++    R    ++++ +++  + ++  F
Sbjct: 180 ARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSF 239

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
            +NM  L     P++M L  I+  ++ HRREV+ RR+ F ++    R  IL+ L +A  N
Sbjct: 240 GINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALAN 298

Query: 400 IDEIIAIIRNEDKPKP-------------------------------------VMVSRFS 422
           ID II +IR+   P                                       V    + 
Sbjct: 299 IDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYY 358

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+  V
Sbjct: 359 LTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELV 418

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           +E F           +               +       V         + +      SA
Sbjct: 419 REQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSA 478

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQ 600
              KE D +   L A+T D IL  S+ G+ Y++    L        G  I  L+ L  ++
Sbjct: 479 ARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDE 538

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        ++   K+ + ++ G       +E       GK  +K+   +++  V   +
Sbjct: 539 RITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTS 598

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G D V +     K++ F    +  M     GVR     +G     +     +G   + + 
Sbjct: 599 GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTAT 657

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              Y +           R   G +  K   R+G  + +
Sbjct: 658 QNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 695



 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 601 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 660

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 661 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 720

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 721 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 757


>gi|294155860|ref|YP_003560244.1| DNA topoisomerase IV, A subunit [Mycoplasma crocodyli MP145]
 gi|291599928|gb|ADE19424.1| DNA topoisomerase IV, A subunit [Mycoplasma crocodyli MP145]
          Length = 912

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/756 (26%), Positives = 367/756 (48%), Gaps = 30/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++     + E +   SL   + ER+  Y+   I++RA+PD+RDG KPVHRRI++AMSE+G
Sbjct: 1   MNKEKEEIVERIINNSLDKIMAERFGRYSKYIIQQRALPDVRDGLKPVHRRILYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     +KKSAR+VG+VIGK HPHGD SVYD++V ++Q +    PL+   GN G++D D 
Sbjct: 61  LTNDKPYKKSARVVGDVIGKYHPHGDTSVYDAMVNMSQWWKSGIPLLDMHGNVGSLDNDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM +V   +L+ + ++ V F   +++ + EP V P+ FPNLL NGT+GIA+
Sbjct: 121 AAAMRYTEVRMAKVCNYMLEDLKKNTVAFIPNFDDSEKEPSVLPTIFPNLLVNGTTGIAI 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT +P HN+ E+ EA +A +  P I+++ L+E+I GPDFPTGG I+   + + E++  
Sbjct: 181 GMATEMPPHNLNEVLEATIAKLRRPSITLDGLMEHIKGPDFPTGG-IIYGNKGVFEAFES 239

Query: 246 G---RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           G   +   ++  ++ V +       I +TEIP+ V KS+L+  I  LI  + I  L +I+
Sbjct: 240 GKLEKEKIKLFCKYEVVK-KDKLQFIEITEIPFGVVKSQLVYDIDVLINTETIDGLLEIK 298

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D+S  +   ++   +   + + ++  +   + M+  +    NV+     P++M L+ +L+
Sbjct: 299 DQSDREGIKIVITLSEEANVESIISFLLQKTSMQVNYSY-NNVVIHNNSPKLMGLNELLE 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVMV 418
            ++ H + +  R  ++ ++    R+EI+ G +      D++I +IR     +      ++
Sbjct: 358 AYIEHIKIIKTRTLTYDLEKYLLRLEIVLGFIKVSEIPDKVIKVIRATEGGKAAVIENLM 417

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           + F+ T NQ  AI  LRL  L K ++     E  +L  +      LL+  K+  N +   
Sbjct: 418 NAFNFTTNQATAIAELRLYRLSKTDKEAFLIEQADLEKKIANTKELLDDEKKFVNYLILL 477

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           ++++ +          RRT   E         +  + E+  + +  S  G+I+ L    V
Sbjct: 478 LKQMIKDMPTP-----RRTQIFEEEFTFNHDKKDLVKEEI-VNIAFSKLGYIKRLSQKVV 531

Query: 539 DLSALHF---KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLL 593
           D +       KE D L     A+T    L+ +  G    +P   +   +       +   
Sbjct: 532 DSNDFSTFALKEDDYLLYIDKANTVHNFLVFTNWGNYAIIPVYKIQETKWKELGTHLSAF 591

Query: 594 IDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEK 649
           +DL   ++I+     +       +++ +  G     +  +  ++ T K  T + + ++++
Sbjct: 592 VDLAPGENIINVIEVEDWNSPDFIVMATKLGFFKRTKIKDFEVSRTNKTYTAINIDNKDE 651

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + ++        ++  +I     + KG +     +     V CF    
Sbjct: 652 VINVAVSDGTKDILIITAMGFATKYNEAEISLYGPKAKGTKGVYLVNKD--FVACFTPTH 709

Query: 708 -GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                I  +   Y +       +   +   G  + K
Sbjct: 710 FNDIVIMISDDGYIKKMKSREIYYVPKTAKGKEIFK 745


>gi|260437350|ref|ZP_05791166.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810262|gb|EFF69467.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
          Length = 761

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 211/777 (27%), Positives = 372/777 (47%), Gaps = 67/777 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ Y++S I  RA+PD+RDG KPV RR+++AM+E+GL++    
Sbjct: 1   MAETILKTEYSDVMQKSYIDYSMSVITARAVPDVRDGLKPVQRRVLYAMNELGLNYDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV L Q F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDAMGKYHPHGDSSIYETLVVLEQDFKKGMALVDGHGNFGSIEGDVAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ +  + + L+ +D+D VDF   ++E + EP V P + PNLL NG  GIAVGM TSI
Sbjct: 121 EARLKKFTQDVYLKDLDKDVVDFVPNFDETEKEPSVLPVRVPNLLINGAEGIAVGMTTSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+     A +DN +I+  +L+EYI GPDFPTGGI++ ++  + + Y  G G  +
Sbjct: 181 PTHNLTEVINGVEAYLDNEDITTAELMEYIPGPDFPTGGIVI-NKSELADIYESGVGKVK 239

Query: 252 VRAR--WCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA 306
           VR +  +   +       +V+TEIPY +  +   + I  + +LI  K+   + DI +ES+
Sbjct: 240 VRGKVVFEPGKKKTDKDKLVITEIPYTMIGTGIGKFISDVVDLIETKKTQDITDISNESS 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    ++ D   L   ++  + +E  F +NM  ++    P+V+ L  I++  + 
Sbjct: 300 KEGIRIVLELKKNADVKKLEHLLYKKTKLEDTFGVNMLTIAD-GRPEVLGLRDIIRYNVE 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--------------- 411
            + E+  R+ +  ++      EI +GL+ A   ID II I+R                  
Sbjct: 359 FQYEINTRKYTTLLKKEYDNKEIKEGLIKACNIIDLIIEILRGSTNLKQAKNCLISGDTE 418

Query: 412 ------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                         +   TE Q  AIL LRL  L  LE   ++ E +  LA   + + +L
Sbjct: 419 GIRFKSDKSEKDAKKLHFTERQATAILELRLYKLIGLEIEALEKEYEETLARIAEYEEIL 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S K     I  ++  +K+ +         R T  E    + A  ++    ++ +  ++ 
Sbjct: 479 GSKKVMKKTIKKDLERIKKEYGME------RLTVIE--DGEVAVYEEPKFVEQEVVFIMD 530

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
             G+ +++ + S + +       +          T++I + + +G  + +   N+   + 
Sbjct: 531 RFGYAKTIDTASFERNKETIYAENKYVF--KCLNTEKICIFTDNGNLHQVKVVNIPFTKF 588

Query: 586 HGE--AIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             +   I  L + N   + +            K L V+ +G   +V+ SE  A ++K   
Sbjct: 589 RDKGTPIDNLGNYNSAGEEIIYLCASKQLEGRKFLFVTKQGMMKLVDGSEFDA-SKKTVA 647

Query: 641 FLKVSSEEKMKLVVKVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
             K++  + + ++                      V +  EN   L F +++IPE  +  
Sbjct: 648 STKLNIGDSIAMIHVTDAVSEITLESDGTIISSQTVVLQTENGYFLKFPLNEIPEKKKSA 707

Query: 685 KGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            GVR     K+  I++V        ++          +  +       KR G G+ +
Sbjct: 708 AGVRGIKLEKEDKIAEVYLIPENADISI-----DYKGKEVSLKKLKTAKRDGKGTKL 759


>gi|238809641|dbj|BAH69431.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 857

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 205/751 (27%), Positives = 368/751 (49%), Gaps = 27/751 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   N  N    +   +   +L   + +R+  Y+   I++RA+PD+RDG KPV RRI+++
Sbjct: 1   MMNKNQENKLNDLLSKIIKENLDTIMADRFSRYSKYIIQQRALPDVRDGLKPVQRRILYS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+GL +   FKKSAR+VG+VIGK HPHGD S+Y+++VR+AQ +   + L+   GN G+
Sbjct: 61  MYELGLQWNKPFKKSARVVGDVIGKYHPHGDSSIYEAMVRMAQDWKMGHTLLEMHGNVGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           ID D AAA RYTE R+  +A+L++  + ++ V F   +++ + EPVV PS  PNLL NG 
Sbjct: 121 IDDDPAAAMRYTEVRLAALADLVIGDLKKNTVKFAPNFDDSEKEPVVLPSLIPNLLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIA G AT +P HN+ EI +A++A I NP+I + KL +Y+ GPDFPTGG +V  ++ I 
Sbjct: 181 KGIASGFATEMPPHNLNEILDASIAKIKNPDIQLSKLFKYVKGPDFPTGG-VVYGQQGIY 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E++  GRG   + +R+   E  +    I + EIPY V KS+L+  I  +I  + +  L +
Sbjct: 240 EAFERGRGRITLVSRYRTFEDKKN-KFIEINEIPYGVIKSKLVHDIDLIIAKESVSGLLE 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           I+D+S  +   +L   ++  + ++++  +   ++M+  +    NV      PQ + L+ +
Sbjct: 299 IKDQSDRNGISILITLDKKANEEVILNYLLQKTEMQIYYTY-NNVAIKNNSPQTLGLNDL 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----PKPV 416
           L  +L H R+V  +   F +     R+EI+ G L      DE+IA+IR  +         
Sbjct: 358 LNCYLDHVRDVKRKTLEFDLVKYKARLEIVLGFLKVAEITDEVIAVIRKSENSKAGVIQN 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++ F  T NQ  AI  LRL  L K ++     E + L  + + ++ LLN  +     + 
Sbjct: 418 LMNHFGFTLNQATAIAELRLYKLSKTDKEAFLLEKEELEKQIKHVEMLLNDKEAFDQYLI 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
             ++E+K+ F +      RRTT  E +          + E+    + ++  G+++ + + 
Sbjct: 478 ETLQEIKKQFGRP-----RRTTITEEAFKVSYNEADLVKEE-ETYIGVTKHGYLKRMSNK 531

Query: 537 SV---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQ 591
            V   D      KEGD +     ++T + +LL +  G    +P         +  G  + 
Sbjct: 532 VVNSNDFLTYGIKEGDKIICFEKSNTINNLLLFTNLGNYAMVPIYKIEESKWKDFGVHLS 591

Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSE 647
             ++L   +++V A     ++    + + + +     V   E  ++   K  T +K+   
Sbjct: 592 DFVELVSGEELVGAINVTDFNIQNYVCLFTKEAQGKRVVLKEFEVSRPNKTFTAMKLRKG 651

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKI 705
           +++       G   V ++ +     +++ + +     +  G +                 
Sbjct: 652 DELVGAKLSNGYKDVLLITKRGMASLYTENDVQIYGTKSNGTKSCYMPPMDSIVAFAMVE 711

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
                 + +   +Y +  +     + K G  
Sbjct: 712 AHETLAMLANE-TYVKRIHVSN--ITKSGKK 739


>gi|241667133|ref|ZP_04754711.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875687|ref|ZP_05248397.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841708|gb|EET20122.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 739

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 256/736 (34%), Positives = 409/736 (55%), Gaps = 18/736 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR V
Sbjct: 11  QSVGEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++
Sbjct: 71  GDVLGKYHPHGDSACYEAMVLMAQNFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSK 130

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A L L+ NP+ SIE++LE I  PD+P G  I+ S+E I E Y+ G G  R +A +  
Sbjct: 191 VINACLHLLSNPKASIEEVLEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEY 250

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPK 316
           +        +++T +P+QV  + ++E+IA  +  ++I  +++I+DES +    +IVL+  
Sbjct: 251 D----NHGNVIITRLPHQVSSASVMEQIANQLKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +   +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +RR  L RR 
Sbjct: 307 STKKNIQKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRRHTLRRRL 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
              +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + SRF+L+E Q +AILN+RL
Sbjct: 367 QTSLDKVLDRLHILEGLLIAFLNIDEVIEIIRNFDDPSLELQSRFALSEIQAEAILNIRL 426

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L K+EE +IK E   L  EKE ++  LNS  +  N +  E++++   F        RR
Sbjct: 427 RKLAKIEEIEIKKEQKELQKEKELLEGYLNSEVKFKNLMKKELKQILADFGD-----SRR 481

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   +  +A +A  ++ ++  E +TV++S  GW+R  K  ++D   L +K  D   +A  
Sbjct: 482 SKIVQADKA-QALEEKDLMPSERVTVILSKAGWVRCAKGDNIDPKGLSYKPEDKPYLATS 540

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            ++  +++  +  GKAY++      S RG+GE I   I L+   +I+     +     L+
Sbjct: 541 GNSNIKLIFFTKLGKAYSMYVDKFPSARGYGEHITTYIPLDKEDEIINIEFANVAEHFLI 600

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSI 675
            S+ G  F++   ++IAN   GK    +   + +   +    D  +  V    + +I   
Sbjct: 601 ASTSGKGFVIPAEDLIANKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDF 657

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRG 734
           +    + +GKG  +           I     E    + +  R     ++N    +  K  
Sbjct: 658 ESFAVLKKGKGKAIIKLDKKDKLKFIELFKLEQELTLSAGKRFIRIDNKNFETYYTDKPS 717

Query: 735 GVGSLVPKGFPRSGKF 750
           G G L+P+GF +  K 
Sbjct: 718 GGGVLLPQGFRKITKI 733


>gi|227872281|ref|ZP_03990640.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841893|gb|EEJ52164.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
          Length = 744

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 218/762 (28%), Positives = 361/762 (47%), Gaps = 55/762 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ YL Y++S I  RA+PD+RDG KPV RR++  M E+ +      
Sbjct: 1   MPEQILTTEFSEEMQKSYLDYSMSVITSRAVPDIRDGLKPVQRRVLFDMGELRVFHDRPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARI G+ +GK HPHGD S+Y++LV LAQ F +   L+ GQGNFG+I+GDSAAA RYT
Sbjct: 61  LKSARICGDTMGKYHPHGDSSIYETLVVLAQGFKKNQALVEGQGNFGSIEGDSAAAPRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +  E +L      +V F+  Y+ +  EPVV P+K P  L NG+ GIAVGM TS P
Sbjct: 121 EARLEKFTEEVLLQDLALSVPFQPNYDGKLEEPVVLPAKIPYFLLNGSEGIAVGMTTSTP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+    L+ + NPE+S+ ++LE + GPDFPTGGI+  ++  + E YR G+G  R+
Sbjct: 181 SHNLSEVISLILSYLKNPELSLSEMLEIMPGPDFPTGGIVA-NQSELEEIYRTGQGRLRL 239

Query: 253 RAR--WCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAE 307
           R +  +  +E       +VVTEIPY +      + ++ +A L   K+I  + DI ++S E
Sbjct: 240 RGKLSFEKKEGRSDRDKLVVTEIPYTMVGQGISKFMQDVANLCEEKKINDILDISNQSNE 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++       D + +   ++  + +E  FP+NM  ++    P+ + L  IL+E+L  
Sbjct: 300 QGIRIVLELKSGADIEKIENILYKKTKLEDSFPVNMLAIAH-GRPETLSLKRILEEYLGF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----- 422
           + E L  + S  ++  +R+ EI +GL+ A   ID IIA++R     K    +        
Sbjct: 359 QVERLEAKFSKLLEKEERKREIEEGLISAVDCIDAIIALLRGAKNHKDAKTALMQGDLSL 418

Query: 423 ------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                              T+ Q  AIL++RL  L  LE   ++      L   +    L
Sbjct: 419 IQLKERDEVFRKTIEGFRFTDLQAQAILDMRLSKLIGLEILSLQKSHRESLKNIKNYKEL 478

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L S K  +  +  E+ ++++ + K      R+T  C+   A +A      IE+  +  + 
Sbjct: 479 LGSKKVLYAHLEQELLQIQKDYGKE-----RKTKICD---AREAVYDDTAIEEMDLYYLQ 530

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
              G+++ +   +                 L    TDR+L  +  G  + +   ++   +
Sbjct: 531 DRFGYVKCVDPGTF--QRNKESIEADYAYVLPCKNTDRLLFFTDLGNMHQIKILDVPVTK 588

Query: 585 GHGEAIQLLI---DLNHNQDIVTAFV--YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
              + + L          + +V  F+        LL V+ +     V+  E     R   
Sbjct: 589 FKDKGVPLDNLSKFSAEQERVVAVFIRKVLEEETLLFVTEQAQIKRVKGEEFATQNRL-V 647

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGI 697
              K+  E+++  V+ V  + + +  E+   L FS+ ++P   +  KGV   S +    +
Sbjct: 648 QATKLGEEDRLLSVLPVGEEDIVLETEDSYFLRFSLSEVPLQKKTAKGVLAMSLRPKDYV 707

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
             V      E +           ++ N      GKRGG G  
Sbjct: 708 KKVYSLAAEENVELES-------KTLNLQRLKQGKRGGKGVK 742


>gi|254525688|ref|ZP_05137740.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537112|gb|EEE39565.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 813

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 209/742 (28%), Positives = 365/742 (49%), Gaps = 24/742 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+ ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MNKKNITSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPERP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  +YP + G GNFG++D D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYDALVRLVQKFSTKYPTLEGHGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A    L+ +  + V F + ++    EP V P++ P LL NG+SGIAVGMAT+
Sbjct: 121 TETRLAPIAHEGFLEEIGSETVSFSNNFDGSQKEPDVLPAQLPFLLLNGSSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  +AL+ N +IS +KL   I GPDFPTGG ++ SR  I E Y  G+G  
Sbjct: 181 IPPHNLGEIVDGLVALVKNKDISDKKLFNIIKGPDFPTGGELIYSRS-IKELYETGKGSI 239

Query: 251 RVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV           I++TE+PYQ+ K+  IEK+AEL+ + +I  + DIRDES
Sbjct: 240 TIRGVVNIEEVYLGKGKHKKNAIIITELPYQINKAGWIEKLAELVNSGKIIGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    +  + +L++ +++  + ++T F      L     P+ + L   L  +L
Sbjct: 300 DRDGMRIVIELKKDSNSELVISNLYKQTTLQTNFGAIFLALIK-GKPKQLNLKEYLSYFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
             R E++ +R+ + ++    ++EI +GL  A  NI ++I II   +            F 
Sbjct: 359 EFREEIIRKRTIYFLKNTLDKLEISEGLSKATKNIKKVIGIIEESENSVKARSKLIENFF 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +++L++ L+ L  LE+ +I  E+ +L  +K     LLN        +  E+  +
Sbjct: 419 LSEKQANSVLDMPLKKLTNLEKNKIDDEIKHLKEKKNYFQKLLNERGILLELLVEELLIL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K+ ++        +                     +   + I NR +++ +   +     
Sbjct: 479 KKKYNVLRKTKVIKNINQNEELETLNNQILEDFINKKTKLYIDNRLYLKRMILGNYKKSF 538

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           ++        +  K   +     +++ ++  GK + +   + +S     +   L     +
Sbjct: 539 EVVNKIIDNKNIQKFICNIEKNIKLIGITNTGKVFNIDWESNISRDYKLDNKILGNIHAN 598

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                 +   ++   L +++S G    V   E +  + +  T  K+ +  K         
Sbjct: 599 EIINFHSIKKETKNYLCILNSDGRFKKVLFDEDMIKSNRSFTITKLKNNLKTIDSFISNE 658

Query: 659 -DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWID 713
             ++ ++    ++  F++    +   S+  +G+ +        I     F   E +  I 
Sbjct: 659 SKYLMILTSIGRIFKFNLSNKFLTPTSKQSQGLIITKLLPTEKIVSCCTFHDGENIFLIS 718

Query: 714 SAGRSYNRSENDL----LGWLG 731
             G+ +  + N++       LG
Sbjct: 719 KKGKIFCINSNEIYCSNEYRLG 740


>gi|123965239|ref|YP_001010320.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
 gi|123199605|gb|ABM71213.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
          Length = 813

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 205/727 (28%), Positives = 368/727 (50%), Gaps = 23/727 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E   ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MTKEKFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VY++LVRL Q F  +YP + G GNFG++D D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYEALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A    LQ ++ D V + + ++    EP + P++ P LL NG+SGIAVGMAT+
Sbjct: 121 TETRLAPIAHECFLQEIETDTVSYSNNFDGSQKEPDILPAQLPFLLLNGSSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  +ALI + +IS  KL + I+GPDFPTGG ++ +   I   Y  GRG  
Sbjct: 181 IPPHNLGEIIDGLIALIRDKDISDSKLSKIILGPDFPTGGELLYN-NGIKNVYLEGRGSI 239

Query: 251 RVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R     EE+           ++++E+PYQ+ K+  IEK+AEL+   +I  + DIRDES
Sbjct: 240 TIRGVIKSEEINLGKGKHKRNALIISELPYQISKAGWIEKLAELVNIGKIDGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    +  +P++++ +++  + +++ F   +  L     P  + L   L  +L
Sbjct: 300 DRDGMRIVIELKKDSNPEIVISNLYKKTTLQSNFGAILLALV-NGKPVQLTLRKYLNYFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
             R E + +R+ + ++    ++EIL+G  IA  NI  II II+N +           +  
Sbjct: 359 EFREETIRKRTKYFLKIASEKLEILEGFSIATKNIKNIIEIIQNSENVSEAKSILIPKLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q DA+L++ L+ L  LE+ Q+++E++ L  +K+ + +LLN+       +  E+ E+
Sbjct: 419 LSNKQADAVLSMPLKKLTNLEKKQVENEINQLFEKKKYLSTLLNNRSLLLETLIKELIEL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K+ F+        +                  +  +   + I NR + + L  ++     
Sbjct: 479 KKKFNVKRKTKILKDINQSEELDTINNQILEDLIIKDAKISIDNRFYFKKLIYYNYKKLL 538

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D      +  +  K   +   + RI+ +++ GK   +            +    ++   +
Sbjct: 539 DQENKFIENKNVQKFICNIKKSLRIIGVTSSGKVLQINW--KSIINNVYKLDNKILGNIN 596

Query: 599 NQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            ++I+     DS     + ++ S G    V   + +  + +  +  K+ +  K+      
Sbjct: 597 PKEIINFHDLDSNLENYICIICSDGKFKKVLLDKDMIRSTRIFSITKLKNSTKIIDSFIY 656

Query: 657 T-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           +  +++ ++    ++  F++    +   S+  +G+ L +          C    + L ++
Sbjct: 657 SQEENIIILTSIGRIFKFNLSNEYLKPSSKQSQGILLVNLLPKEQIVSCCKSKEKDLLYL 716

Query: 713 DSAGRSY 719
            S    +
Sbjct: 717 ISNKGKF 723


>gi|308234790|ref|ZP_07665527.1| DNA topoisomerase IV subunit A [Gardnerella vaginalis ATCC 14018]
 gi|311114503|ref|YP_003985724.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
 gi|310945997|gb|ADP38701.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
          Length = 889

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 217/841 (25%), Positives = 359/841 (42%), Gaps = 101/841 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRI++ M  M L  
Sbjct: 13  DPRKVKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLTP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+ KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  EHAYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   ++ED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARLAPAALGMNADINEDTVDFAPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  ++ +P  +++ L++ + GPD+P GGII+  R  I E+Y  GRG
Sbjct: 192 TNMATHNLGEVVAAAKYVMKHPNATLDDLMQIVPGPDWPGGGIIIG-RSGIREAYETGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
            F  R++  +E V      I+VTE+P+ V   R++E+I++ I A+++  +    D +   
Sbjct: 251 AFTTRSKTHIENVTARKKAIIVTELPFMVGPERVLERISQGIKARKLDGISGAIDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP+ ++  +F  + ++  F +N   L     P  M L  +L  W+ H
Sbjct: 311 NGTRIVIEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVD-GRPHTMGLRELLDVWILH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLT 424
           RR V+ RRS FR+     R+ +++GLL+A L+IDE+I +IR+ +  +         F L 
Sbjct: 370 RRTVIRRRSEFRLNKAKERLHLVEGLLLAMLDIDEVIQVIRSSEDAETAKSKLISVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   +++ E ++LL + ++++ +L+S  Q    +  E+    +
Sbjct: 430 EIQAQYILDLRLRRLTKMSRIELEGEKNDLLQKIDELNEILSSASQLDKVVIAEMDYAVK 489

Query: 485 IFSKS--------------TDLGRRRTTFCEVSRADKATLQQA----------------- 513
            +                 T +  + +       A  A +                    
Sbjct: 490 QWDTPRRTILLDEQEDGSFTPVCTKNSKEVNSDSAMDAVIAANQLTNAQADVAAAASAAR 549

Query: 514 ------------MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI--ALHAHT 559
                        +  EP  V +S  G I      + +    H                T
Sbjct: 550 KSGDTDATSAALQLSDEPCAVALSTSGLIARTSVETFNRWQSHSSNIFDTPCLNVFTTTT 609

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI----------------DLNHNQDIV 603
                L+++ G+       +L       E +   +                D    + +V
Sbjct: 610 RATYALITSAGRLVIAHVADLPHLNQGDENVSESLSNGVKASELLTSTQSTDPIRGEKVV 669

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            A      DS   L + +  G             T    + + +   + +        + 
Sbjct: 670 AAIALSESDSKTPLAIGTKNGVVKRWNFE--SPTTMDSWSIIDLKDNDSVINAALANDED 727

Query: 661 -VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV------------------ 700
            +  +  +  LL F   Q+    R   G+      +                        
Sbjct: 728 RLVFISSDSSLLTFDAKQVRAQGRSSAGMAGIRLNEECTVSAFAVVAKNDVEWNYEEGEN 787

Query: 701 --------ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   + F +      +        +     +     RG  G    +        L+
Sbjct: 788 GLFSASGSVVFTLAGDSDALAGTENGAAKITPLEMYPTKGRGTGGVRSQRFLKGQNTILA 847

Query: 753 S 753
           +
Sbjct: 848 A 848


>gi|302670819|ref|YP_003830779.1| DNA topoisomerase IV subunit A ParC [Butyrivibrio proteoclasticus
           B316]
 gi|302395292|gb|ADL34197.1| DNA topoisomerase IV subunit A ParC [Butyrivibrio proteoclasticus
           B316]
          Length = 745

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 205/761 (26%), Positives = 361/761 (47%), Gaps = 51/761 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +E+ +        +++ ++ YA+S I  RA+PD+RDG KPV RR ++ M E+GL +   +
Sbjct: 1   MEDRIIKTEYSDIMQKSFIDYAMSVIVARALPDVRDGLKPVQRRTLYDMYELGLRYDRPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+YD LV + Q F +  PL+ G GNFGNI+GDS AA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYDCLVVMTQDFKKILPLVDGHGNFGNIEGDSHAAMRYT 120

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR++++ +   L+ +D++ VDF   ++E + EP V P K PN L NG+ GIAVGMATS 
Sbjct: 121 EARLSKITQENFLEDLDKNVVDFVPNFDETEREPSVLPVKIPNFLINGSEGIAVGMATST 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A +A + +  ++ + L++YI GPDFPTGGI++ +++ ++E Y  G G  R
Sbjct: 181 PPHNLAEVIDAEIAFMQDDTLTTKDLMKYIKGPDFPTGGIVI-NKDELLEIYETGVGKIR 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R +   E+   G   +V+TEIPY +      + +  +AEL   K    + DI ++S+++
Sbjct: 240 IRGKVETEKGKNGHINLVITEIPYTMIGMGIGKFMSDVAELAEKKITNDIIDISNQSSKE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  + +     ++  + +E  F +NM  +     P+ M L  I++     +
Sbjct: 300 GIRIVIELKKDTNVENFTNLLYKKTKLEDTFGVNMLAID-NGRPETMSLREIMRACADFQ 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------ 422
            E   R+ +  ++    + EI +GL+ A   ID +I I+R             +      
Sbjct: 359 FETATRKYTTLLKKEQDKKEIQEGLIKACNVIDLVIEILRGSKDRAMAKNCLVNGETEGI 418

Query: 423 ---------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                           TE Q DAIL +RL  L  LE   +  E +  +A   K + +L +
Sbjct: 419 NFKSRESKAMAAQLLFTEAQADAILEMRLYKLIGLELEALVKEHEQTVANIYKYEDILEN 478

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                  I  ++ ++K+ F        R+T       A     ++  +E+  +  ++   
Sbjct: 479 HDSMAMVIQSDLNKIKKEF-----KADRKTVIDNRETA---VYEEKPVEEMDVAFIMDRF 530

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRG 585
           G+ +++ + + +            K +     T ++   +  G  +T+ A +L     R 
Sbjct: 531 GYAKTIDASTYEK--NKETIQAEFKYSFIMKNTGKVCFFTNTGNLHTVKAMDLPQGKMRD 588

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKL---LVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G  I  + + +  ++ +      S   L   L  +      IV+  E    +++     
Sbjct: 589 KGIPIDNVSNFDTAKETIIMAASQSDLNLYRILFTTKMSMMKIVDGGEFD-VSKRTVAAT 647

Query: 643 KVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISD 699
           K++  +++  V  +     V +   +   L F +D IPE  +   GVR     K+  I D
Sbjct: 648 KLADGDEVVNVEILHEQKTVILRSNDGFFLRFYVDTIPEKKKAAVGVRGMRLGKNDFIRD 707

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           V      E      +      ++       +  R   G+ V
Sbjct: 708 VFYLNDMEEKAIEHND-----KTLELGHLKVTSRDTKGTKV 743


>gi|116491057|ref|YP_810601.1| DNA topoisomerase IV subunit A [Oenococcus oeni PSU-1]
 gi|116091782|gb|ABJ56936.1| DNA topoisomerase IV subunit A [Oenococcus oeni PSU-1]
          Length = 811

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 203/734 (27%), Positives = 369/734 (50%), Gaps = 25/734 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  A++
Sbjct: 4   ESRIQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQHAYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG V+G  HPHGD S+YD+LVR++Q +  R PLI   GN G+ID D  AA RYTE
Sbjct: 64  KSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L  +D+ AVD    +++   EP V PS+ PNLL NG SGI+ G AT IP 
Sbjct: 124 ARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYATEIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A + L+ +P  S+E L++Y+ GPDFPTGG I++  + I  +Y  GRG   +R
Sbjct: 184 HNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGG-IIQGLDGIKNAYTTGRGKVYLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++++  G   I +TE+PY+V KS L+ +I E+ + K +  + ++RD+++ +  ++ 
Sbjct: 243 AKTEIKQLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREGLLIA 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
              ++  + + +++ +F  +D++  +  NM  ++  R P  + L   L  +L  R+EV+ 
Sbjct: 303 IELSKDANAEGILDYLFKKTDLQIAYNFNMTAINKQR-PVSVGLKQALSAFLDFRKEVIR 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R EI++GL+     +DE++A IR  +     K  ++ +F  ++ Q +A
Sbjct: 362 RRTEFELKKAQARQEIVEGLIKMLSILDEVVATIRGSESRKNAKENLIKKFQFSDPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   +++E D L  +  + +S+L   K+    +  E++E+++ +S   
Sbjct: 422 IVTLQLYRLTNTDVVALQNEHDRLTKQISEFNSILKETKELNKVLRNELKEIEKKYSNP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-KEGD 549
                R +  +   +        MI  E + V I+  G+ +     S   +  +   + D
Sbjct: 481 -----RRSQIQTEVSQLKIDTAVMIANEDVIVQITKNGYAKRASFRSYKATDDNGLTDDD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI---DLNHNQDIVTAF 606
                   +T   + + +  G         L   +       L      L  ++ ++  F
Sbjct: 536 YPVYLAKVNTLSSLFIFTNKGNLIYRQVYELADTKWKDVGEHLSQEISGLAEDEIVIKVF 595

Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEI---IANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            +     T   +  SS      V+++ +       ++    + +  +  +  V      +
Sbjct: 596 DFKDLKQTGTFVFTSSDAFVKQVDKNALNPTKYYKKRASKAIAIKGKNVLVSVAFAASQN 655

Query: 661 --VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             V +  +   L  F I +I  M ++  G +            +     E L  +  + R
Sbjct: 656 HLVVMATQKGYLYKFPIGEIALMTAKSSGAKPAKISKKDRIVSMDLIDSEDLMVLM-SDR 714

Query: 718 SYNRSENDLLGWLG 731
            +++  N L   + 
Sbjct: 715 GHSKIINPLEIPIS 728


>gi|238917146|ref|YP_002930663.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
 gi|238872506|gb|ACR72216.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
          Length = 769

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 210/784 (26%), Positives = 364/784 (46%), Gaps = 75/784 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ Y++S I  RA+PD+RDG KPV RR+++AM  +GL++    
Sbjct: 1   MAEKIIRTEYSEVMQKSYIDYSMSVITARALPDVRDGLKPVQRRVLYAMDRLGLNYDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV L+Q F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EA++ +  + + L  +D++ VDF   ++E + EP V P + PNLL NG  GIAVGM T+I
Sbjct: 121 EAKLKKFTQDVYLADLDKNVVDFVPNFDETEKEPEVLPVRVPNLLVNGADGIAVGMTTNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +DN +I+ ++L++   GPDFPTGGI++ ++  +   Y  G G  +
Sbjct: 181 PPHNLSEVVDAVCAYMDNEDITTDELMQLCPGPDFPTGGIVI-NKSELGAIYETGTGKIK 239

Query: 252 VRARWCVEEVGRGSW--CIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +   E     S    +V+TEIPY +      + I  +  LI  K+   + DI +ES+
Sbjct: 240 LRGKVIFEPAKNRSEKDKLVITEIPYTMIGANIGKFISDVVSLIETKKTTDIVDISNESS 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    ++ D   L   ++  + +E  F +NM  +     P+ + +  I+K  + 
Sbjct: 300 KEGIRIVLELKKNADVKNLENLLYKKTKLEDTFGVNMLAIVD-GRPETLGIKDIIKHHIN 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------- 410
            + E+  R+ +  ++      EI +GL+ A   ID II I+R                  
Sbjct: 359 FQYELATRKYTTLLEKEKANREIKEGLIRACDIIDLIIEILRGSANLKMAKDCLVNGNVE 418

Query: 411 -----DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                 +      +    TE Q  AIL +RL  L  LE   ++ E D  + + EK + +L
Sbjct: 419 GIKFKSEQSKKQAAGLDFTERQAGAILEMRLYKLIGLEILNLQKEYDECVKKIEKYEKIL 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S K+    I  ++  +K+ +        RRT   +   A     ++  I +  +  ++ 
Sbjct: 479 GSRKEMAKVIKADLLNIKKEYGVE-----RRTVIEDGEAA---VFEEKKIPEMEVMFIMD 530

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
             G+ R++   + + +       +  K  +    TD+I + +  G  + L   +L   + 
Sbjct: 531 RFGYARTIDMAAFERNKDA--VFNENKYVIPVMNTDKICIFTDTGDLHQLKIKDLPFTKF 588

Query: 586 HGE--AIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             +   I  L + + +++I+            K+L V+ +G   +V+  E     R    
Sbjct: 589 RDKGTPIDNLCNYDSSKEIIVYITPFERLKNQKMLFVTRQGMMKLVDSEEFQVAKRT-VA 647

Query: 641 FLKVSSEEKMKLVVKVT-----------------------GDHVAVVGENRKLLIFSIDQ 677
             K++ ++K+  +                             +V V  EN   L F +  
Sbjct: 648 CTKLADDDKLIGMYSTDARVEIYSKFSLDGEIKEEEVVESNQNVIVQTENGVFLKFPLTD 707

Query: 678 IPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           IP   +   GVR     KD  I DV      +  T          +S +        R  
Sbjct: 708 IPMKKKSAVGVRGIKLSKDDYIEDVFLLTEGDEFTM-----EYKGKSISFAKMKTAHRDT 762

Query: 736 VGSL 739
            G+ 
Sbjct: 763 KGTK 766


>gi|290890538|ref|ZP_06553613.1| hypothetical protein AWRIB429_1003 [Oenococcus oeni AWRIB429]
 gi|290479934|gb|EFD88583.1| hypothetical protein AWRIB429_1003 [Oenococcus oeni AWRIB429]
          Length = 811

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 203/734 (27%), Positives = 369/734 (50%), Gaps = 25/734 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  A++
Sbjct: 4   ESRIQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQHAYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG V+G  HPHGD S+YD+LVR++Q +  R PLI   GN G+ID D  AA RYTE
Sbjct: 64  KSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L  +D+ AVD    +++   EP V PS+ PNLL NG SGI+ G AT IP 
Sbjct: 124 ARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYATEIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A + L+ +P  S+E L++Y+ GPDFPTGG I++  + I  +Y  GRG   +R
Sbjct: 184 HNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGG-IIQGLDGIKNAYTTGRGKVYLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++++  G   I +TE+PY+V KS L+ +I E+ + K +  + ++RD+++ +  ++ 
Sbjct: 243 AKTEIKQLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREGLLIA 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
              ++  + + +++ +F  +D++  +  NM  ++  R P  + L   L  +L  R+EV+ 
Sbjct: 303 IELSKDANAEGILDYLFKKTDLQIAYNFNMTAINKQR-PVSVGLKQALSAFLDFRKEVIR 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R EI++GL+     +DE++A IR  +     K  ++ +F  ++ Q +A
Sbjct: 362 RRTEFELKKAQARQEIVEGLIKMLSILDEVVATIRASESRKNAKENLIKKFQFSDPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   +++E D L  +  + +S+L   K+    +  E++E+++ +S   
Sbjct: 422 IVTLQLYRLTNTDVVALQNEHDRLTKQISEFNSILKETKELNKVLRNELKEIEKKYSNP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-KEGD 549
                R +  +   +        MI  E + V I+  G+ +     S   +  +   + D
Sbjct: 481 -----RRSQIQTEVSQLKIDTAVMIANEDVIVQITKNGYAKRASFRSYKATDDNGLTDDD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI---DLNHNQDIVTAF 606
                   +T   + + +  G         L   +       L      L  ++ ++  F
Sbjct: 536 YPVYLAKVNTLSSLFIFTNKGNLIYRQVYELADTKWKDVGEHLSQEISGLAEDEIVIKVF 595

Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEI---IANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            +     T   +  SS      V+++ +       ++    + +  +  +  V      +
Sbjct: 596 DFKDLKQTGTFVFTSSDAFVKQVDKNALNPTKYYKKRASKAIAIKGKNVLVSVTFAASQN 655

Query: 661 --VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             V +  +   L  F I +I  M ++  G +            +     E L  +  + R
Sbjct: 656 HLVVMATQKGYLYKFPIGEIALMTAKSSGAKPAKISKKDRIVSMDLIDSEDLMVLM-SDR 714

Query: 718 SYNRSENDLLGWLG 731
            +++  N L   + 
Sbjct: 715 GHSKIINPLEIPIS 728


>gi|308189673|ref|YP_003922604.1| topoisomerase IV subunit A [Mycoplasma fermentans JER]
 gi|319776856|ref|YP_004136507.1| topoisomerase iv subunit a [Mycoplasma fermentans M64]
 gi|307624415|gb|ADN68720.1| topoisomerase IV subunit A [Mycoplasma fermentans JER]
 gi|318037931|gb|ADV34130.1| Topoisomerase IV subunit A [Mycoplasma fermentans M64]
          Length = 856

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 204/747 (27%), Positives = 367/747 (49%), Gaps = 27/747 (3%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N  N    +   +   +L   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M E+
Sbjct: 4   NQENKLNDLLSKIIKENLDTIMADRFSRYSKYIIQQRALPDVRDGLKPVQRRILYSMYEL 63

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL +   FKKSAR+VG+VIGK HPHGD S+Y+++VR+AQ +   + L+   GN G+ID D
Sbjct: 64  GLQWNKPFKKSARVVGDVIGKYHPHGDSSIYEAMVRMAQDWKMGHTLLEMHGNVGSIDDD 123

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE R+  +A+L++  + ++ V F   +++ + EPVV PS  PNLL NG  GIA
Sbjct: 124 PAAAMRYTEVRLAALADLVIGDLKKNTVKFAPNFDDSEKEPVVLPSLIPNLLLNGAKGIA 183

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
            G AT +P HN+ EI +A++A I NP+I + KL +Y+ GPDFPTGG +V  ++ I E++ 
Sbjct: 184 SGFATEMPPHNLNEILDASIAKIKNPDIQLSKLFKYVKGPDFPTGG-VVYGQQGIYEAFE 242

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   + +R+   E  +    I + EIPY V KS+L+  I  +I  + +  L +I+D+
Sbjct: 243 RGRGRITLVSRYRTFEDNKN-KFIEINEIPYGVIKSKLVHDIDLIIAKESVSGLLEIKDQ 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   +L   ++  + ++++  +   ++M+  +    NV      PQ + L+ +L  +
Sbjct: 302 SDRNGISILITLDKKANEEVILNYLLQKTEMQI-YYTYNNVAIKNNSPQTLGLNDLLNCY 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----PKPVMVSR 420
           L H R+V  +   F +     R+EI+ G L      DE+IA+IR  +         +++ 
Sbjct: 361 LDHVRDVKRKTLEFDLVKYKARLEIVLGFLKVAEITDEVIAVIRKSENSKAGVIQNLMNH 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F  T NQ  AI  LRL  L K ++     E + L  + + ++ LLN  +     +   ++
Sbjct: 421 FGFTLNQATAIAELRLYKLSKTDKEAFLLEKEELEKQIKHVEMLLNDKEAFDQYLIETLQ 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-- 538
           E+K+ F +      RRTT  E +          + E+    + ++  G+++ + +  V  
Sbjct: 481 EIKKQFGRP-----RRTTITEEAFKVSYNEADLVKEE-ETYIGVTKHGYLKRMSNKVVNS 534

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLID 595
            D      KEGD +     ++T + +LL +  G    +P         +  G  +   ++
Sbjct: 535 NDFLTYGIKEGDKIICFEKSNTINNLLLFTNLGNYAMVPIYKIEESKWKDFGVHLSDFVE 594

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMK 651
           L   +++V A     ++    + + + +     V   E  ++   K  T +K+   +++ 
Sbjct: 595 LVSGEELVGAINVTDFNIQNYVCLFTKEAQGKRVVLKEFEVSRPNKTFTAMKLRKGDELV 654

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGL 709
                 G   V ++ +     +++ + +     +  G +                     
Sbjct: 655 GAKLSNGYKDVLLITKRGMASLYTENDVQIYGTKSNGTKSCYMPPMDSIVAFAMVEAHET 714

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGV 736
             + +   +Y +  +     + K G  
Sbjct: 715 LAMLANE-TYVKRIHVSN--ITKSGKK 738


>gi|293363538|ref|ZP_06610294.1| DNA gyrase/topoisomerase IV, A subunit [Mycoplasma alligatoris
           A21JP2]
 gi|292552887|gb|EFF41641.1| DNA gyrase/topoisomerase IV, A subunit [Mycoplasma alligatoris
           A21JP2]
          Length = 880

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 203/750 (27%), Positives = 363/750 (48%), Gaps = 29/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  N    E +   SL   + E++  Y+   I++RA+PD+RDG KPVHRRI++AMSE+G
Sbjct: 1   MNKENQQKLEKIINNSLDKIMAEKFGRYSKYIIQQRALPDVRDGLKPVHRRILYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     +KKSAR+VG+VIGK HPHGD SVYD++V ++Q +     L+   GN G++D D 
Sbjct: 61  LTSDKPYKKSARVVGDVIGKYHPHGDTSVYDAMVNMSQWWKNGIALLDMHGNVGSLDNDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++   +L  + ++ V F   +++ + EP V PS FPNLL NGT+GIA+
Sbjct: 121 AAAMRYTEVRMSKICNYMLDDLKKNTVSFIPNFDDSEKEPSVLPSIFPNLLVNGTTGIAI 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT +P HN+ E+ EA +A +  P I+++ L+E+I GPDFPTGG I+   + I E++  
Sbjct: 181 GMATEMPPHNLNEVLEATIAKLKRPTITLDGLMEHIKGPDFPTGG-IIYGNKGIFEAFYN 239

Query: 246 G---RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           G   +   ++ + + V++  +    I +TEIP+ V KS+L+  I  LI  + I  L +I+
Sbjct: 240 GKLDKEKIKLFSNYTVKQTDKN-KLIEITEIPFGVVKSQLVYDIDVLINNESIDGLLEIK 298

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D+S  +   ++   ++  + + ++  +   + M+  +    NV+     P++M L+ +L 
Sbjct: 299 DQSDREGIRIVITLSKDANEESIISFLLQKTSMQVNYSY-NNVVISNNSPKLMNLNELLD 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED----KPKPVMV 418
            ++AH ++V  +  ++       R+EI+ G L      D +I +IRN +         + 
Sbjct: 358 AYIAHIKDVKTKTLTYDYNKYLLRLEIVLGFLKVAEITDAVIKVIRNSEGSKSGVIKALK 417

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             F  ++NQ  AI  LRL  L K ++     E   L      I  LL+  K+    +   
Sbjct: 418 ESFGFSQNQATAIAELRLYRLSKTDKQAFLIEKAELEKNIANIKELLSDEKKFVGYLIEL 477

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +R + +          R+T       +     +  + E+  + +  S  G+I+ L    +
Sbjct: 478 LRGIIKEIPTP-----RKTQIVAEEFSFNHDKKDLVKEEI-VNISFSKNGYIKRLSQKII 531

Query: 539 DLSALHFKE---GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLL 593
           D ++         D+L     ++T   IL+ +  G    +P         +  G  +   
Sbjct: 532 DSNSPESYMLKEEDNLVFFDKSNTMHNILIFTNLGNYAIIPVYKILESKWKDLGTHLSDF 591

Query: 594 IDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEK 649
           + L   + IV     +       ++++S +G A     S+  ++   K  T LK+   ++
Sbjct: 592 VALYPGESIVNVIDVEDWNVGDYVVIMSKQGYAKKTLISDFEVSRINKSYTALKIDKNDE 651

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSY-KDGGISDVICFKIC 706
           +  V    G   + +V        ++ + +     + KG +         ++     K  
Sbjct: 652 IVNVALSDGTKDILIVTAMGYTSKYNENDLNIYGPKAKGSKAVYLSNKDYVASFEMVKFN 711

Query: 707 EGLTWIDSAGRSYNRSENDLLG-WLGKRGG 735
           + ++ +   G        D+L      +G 
Sbjct: 712 DTVSMLTDDGYFKKMKAKDILYVPKTNKGK 741


>gi|77409786|ref|ZP_00786437.1| DNA gyrase, A subunit, truncation [Streptococcus agalactiae COH1]
 gi|77171606|gb|EAO74824.1| DNA gyrase, A subunit, truncation [Streptococcus agalactiae COH1]
          Length = 733

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 197/669 (29%), Positives = 332/669 (49%), Gaps = 21/669 (3%)

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF+D 
Sbjct: 1   MVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDN 60

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++  +L
Sbjct: 61  YDGSEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTREL 120

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPTG  +V  R  I  +Y  G+G   +R+R  +E    G   IVVTE PY V
Sbjct: 121 MEVIPGPDFPTGA-LVMGRSGIHRAYETGKGSIVLRSRTEIETTSNGKERIVVTEFPYGV 179

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+++ E I  L   KRI  +  +RDES+ +    +    R    ++++ ++F L+ ++T
Sbjct: 180 NKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFVIEVRRDASANVILNNLFKLTSLQT 239

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
            F  NM  +    VP+++ L  I+  ++ H++EV+ RR+ F     + R  IL+GLL+A 
Sbjct: 240 NFSFNMLAIEK-GVPKILSLRQIIDNYIEHQKEVIVRRTQFDKAKAEARAHILEGLLVAL 298

Query: 398 LNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
            ++DE+I IIRN +     +  ++SRF L+E Q  AIL++RLR L  LE  +I+SE ++L
Sbjct: 299 DHLDEVITIIRNSETDTIAQAELMSRFELSERQSQAILDMRLRRLTGLERDKIQSEYNDL 358

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           LA    +  +L   ++    I  E+ EVK  ++ +    R      EV   +   L +  
Sbjct: 359 LALIADLADILAKPERVVTIIKEEMDEVKRKYADA---RRTELMIGEVLSLEDEDLIEEE 415

Query: 515 IE----KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                      +    +   R+ K     +        D ++  +   T D +L  +  G
Sbjct: 416 DVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLG 475

Query: 571 KAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAF 624
           + Y L A  +       +   I  L+ L+  + I T         +       + +G   
Sbjct: 476 RVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDVANKYFFFTTQQGIVK 535

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR 683
               SE     + G   + +   +++  V+ +   + V +       + F ++ +  M R
Sbjct: 536 RTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNMGR 595

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR  + ++G    V   +I  G   +    + Y +           RGG G     
Sbjct: 596 TATGVRGVNLREGDKV-VGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIKTAN 654

Query: 743 GFPRSGKFL 751
              ++G   
Sbjct: 655 ITAKNGPLA 663



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 66/190 (34%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               L A++ KE D L   L     + +++ +  G +       + +
Sbjct: 533 IVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRN 592

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                  ++  ++L     +V A    +  ++L+++ KG     E SE     R GK   
Sbjct: 593 MGRTATGVRG-VNLREGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIK 651

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +    +LV     + + V+ +   ++  ++  I +  R   GV++        
Sbjct: 652 TANITAKNGPLARLVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAK 711

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 712 IVTVALVEQE 721


>gi|167766556|ref|ZP_02438609.1| hypothetical protein CLOSS21_01062 [Clostridium sp. SS2/1]
 gi|167711679|gb|EDS22258.1| hypothetical protein CLOSS21_01062 [Clostridium sp. SS2/1]
 gi|291558594|emb|CBL37394.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [butyrate-producing bacterium SSC/2]
          Length = 750

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 220/770 (28%), Positives = 369/770 (47%), Gaps = 64/770 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E++        +++ Y+ YA+S I  RA+PD RDG KPV RR++++M E+GL +    
Sbjct: 1   MSEHIIKAEFSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYSMDELGLRYDRPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y+SLV ++Q F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYESLVVMSQDFKKGVPLVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ ++ +   L  +D++ VDF   ++E + EP V P K PNLL NG  GIAVGM TSI
Sbjct: 121 EARLQKITQEAYLADLDKNVVDFVSNFDETEKEPEVLPVKVPNLLVNGADGIAVGMTTSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +    I+ E+L+EYI GPDFPTGG +V +++ ++  Y  G G  +
Sbjct: 181 PPHNLGEVVDAVKAYMRKESITNEELMEYIKGPDFPTGG-LVINKKDLLNIYSSGTGKLK 239

Query: 252 VRARWCVEEVGRGSW--CIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +   E   +      +V++EIPY +     S+ +     LI  K    + DI +ES+
Sbjct: 240 LRGKVTFEPAKKRGEKDKLVISEIPYTMIGNNISKFLSDTVALIENKVTTDILDISNESS 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   ++    +  D + L   ++  + +E  F +NM  +     P+ + L GI++    
Sbjct: 300 KDGIRIVLELRKGADVERLKNLLYKKTKLEDTFGVNMLAIVD-GRPETLDLKGIIENHTQ 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------- 419
              EV  R+    +  +  + EI +GL+ A   ID II IIR     K V          
Sbjct: 359 FYYEVTRRKYKTLLSKLYEQREIKEGLIKACDMIDLIIEIIRGSKSQKEVKACLTKGDVG 418

Query: 420 --------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                         + S T+ Q  AIL+L+L  L  LE   +K E + +LA+ E+ + +L
Sbjct: 419 NINFKSSDSMIEATKLSFTDKQASAILDLKLYRLIGLEILMLKEEYEEILAKIEEYEDIL 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           N+ K   N I  E+ ++K+ F        RRT   +   A            +  TV   
Sbjct: 479 NNEKSLKNVIRKELDKIKKEFG-----RERRTVVEDGKEAVYVA-----APVKEETVYFV 528

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
              +  S                   K  +    TD+I + +  G  + +   ++ +G+ 
Sbjct: 529 MDRFGYSKTMDKATYQRNKENILKEYKFIVPCMNTDKICIFTNLGVMHQIKVLDIPAGKF 588

Query: 586 HGEAIQLLIDLNHN---QDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             + + +    N++   + I+     +S     LL  ++K    +++  E++   ++   
Sbjct: 589 RDKGVPIDNLCNYDSTKEYIIQVLDAESMIHSSLLFATAKSMLKVMD-GELLNAAKRTVQ 647

Query: 641 FLKVSSEEKMKLVVKVT-----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-K 693
             K+S  +++  V+ +       D V +  +    L F + +IP+  +   GVR     K
Sbjct: 648 ATKLSE-DELIEVIPIDWMEGSEDKVVLQTKEGVFLKFLLSEIPKKKKSALGVRGMKLSK 706

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG---WLGKRGGVGSLV 740
           D  ++++         + +          E +L      L KR   G+ V
Sbjct: 707 DDSLTNIYVMAAQNISSIVY--------KEKELEFHRLKLSKRDSKGTKV 748


>gi|77362544|emb|CAJ33722.1| DNA gyrase subunit A [Bacillus plakortidis]
          Length = 470

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 200/471 (42%), Positives = 310/471 (65%), Gaps = 6/471 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              + N+  +++   ++  ++ YA+S I  RA+PD RDG KPVHRRI++AM+++G+    
Sbjct: 3   EQNQSNITEINIGQEMQTSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNDLGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 63  AYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M++++  +++ +++D +DF+D Y+  + EPVV P++FPNLL NGTSGIAVGMAT+
Sbjct: 123 YTEAKMSKISMELVRDINKDTIDFQDNYDGSEQEPVVMPARFPNLLVNGTSGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP H + E+ +  LAL +N EI I +L+EYI GPDFPTG  I+  R  I  +Y+ GRG  
Sbjct: 183 IPPHQLGEVIDGVLALSENREIDIAELMEYIPGPDFPTGAEIL-GRSGIRRAYQTGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  + E   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES     
Sbjct: 242 TLRAKTEI-EDHNGKQRIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRTGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  + ++L+ ++   + +++ F +N+  L  G  P+V+ L   L+E+L H+  
Sbjct: 301 RIVIEVRRDANANVLLNNLHKQTALQSSFGINLLALV-GGRPKVLNLKECLEEYLDHQIV 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V  RR++F ++  + R  IL+GL IA  ++DE+I++IR        +  ++ RF L+ +Q
Sbjct: 360 VTRRRTAFELKKAEARAHILEGLRIALDHLDEVISLIRASQTTEIARNGLMERFELSYDQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             AIL++RL+ L  LE  +I+ E + L     ++  +L +  +    I  E
Sbjct: 420 SQAILDMRLQRLTGLERDKIEGEYNELQQRIAELKEILENEYKGLEIIREE 470


>gi|323255479|gb|EGA39242.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
          Length = 554

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 224/567 (39%), Positives = 330/567 (58%), Gaps = 52/567 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S  +    I  E+  +++ F        RRT   E++    
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSA 526

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLK 534
               + +I +E + V +S++G+++   
Sbjct: 527 DINIEDLISQEDVVVTLSHQGYVKYQP 553


>gi|218133090|ref|ZP_03461894.1| hypothetical protein BACPEC_00952 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991963|gb|EEC57967.1| hypothetical protein BACPEC_00952 [Bacteroides pectinophilus ATCC
           43243]
          Length = 776

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 210/792 (26%), Positives = 374/792 (47%), Gaps = 75/792 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T++ E +        +++ Y+ Y++S I  RA+PD RDG KPV RR+++AM ++G
Sbjct: 1   MIEMETIMAEQIVKTEYSELMQKSYIDYSMSVITARALPDARDGLKPVQRRVLYAMDQLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L++    +KSARIVG+ +GK HPHGD S+Y++LV L Q F +   L+ G GNFG+I+GD 
Sbjct: 61  LNYDKPHRKSARIVGDTMGKYHPHGDSSIYETLVVLEQDFKKGMALVDGHGNFGSIEGDG 120

Query: 126 AAAYRYTEARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           AAA RYTEA++ +  + + L  +D+D VDF   ++E + EP V P + PNLL NG  GIA
Sbjct: 121 AAAMRYTEAKLKKFTQDVYLADLDKDVVDFIPNFDETEKEPEVLPVRVPNLLINGAEGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGM T+IP+HN+ E+ +A  A +D+  I+ E L+EY+IGPDFPTGG +V ++  +   Y 
Sbjct: 181 VGMTTNIPTHNLGEVVDACCAYMDDENITTEGLMEYVIGPDFPTGG-LVVNKSELPAIYE 239

Query: 245 LGRGGFRVRARWCVEE--VGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLE 299
            G G  ++R +   E          +V+TEIPY +      + +  + +L+  K+   + 
Sbjct: 240 SGTGKIKLRGKVVFEPAAKKSERDKLVITEIPYTMIGANIGKFLSDVIDLVETKKTSDIV 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DI +ES+++   ++    R+ D + L   ++  + +E  F +NM  +     P+ + L  
Sbjct: 300 DISNESSKEGIRIVLELKRNADVEKLKNMLYKKTKLEDTFGVNMLAIVD-GKPETLGLKS 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           I+K  +  + ++  R+ +  +       EI +GL+ A   ID II I+R           
Sbjct: 359 IIKHHIDFQYQLATRKYNTLLARERDNKEIQEGLIKACDIIDLIIEILRGCKNRSQAKDC 418

Query: 420 ---------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                    TE Q  AIL LRL  L  LE  +++ + +  L + 
Sbjct: 419 LVNGNVKDINFKSETSRKAASGLHFTERQASAILELRLYRLIGLEILELQKQYEQTLKKI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            + + +L S     N I  +++ +K+ ++        R T  E   A  A  ++  ++++
Sbjct: 479 AEYEKILGSRTAMKNVIKKDLQAIKKEYALP------RKTVIE--DAKAAVFEEEKVKEQ 530

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            +  ++   G+ +++   + + +       +          TD+I + + +G  + +   
Sbjct: 531 EVVFIMDRFGYSKTIDIAAYERNMEAVHNENKYIF--KCMNTDKIYIFTDNGNLHQIKVM 588

Query: 579 NLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIA 633
           +L   +   +   I  + + + + + +           CKLL V+ +G   +V+ SE  A
Sbjct: 589 DLPFTKFRDKGVPIDNVGNYDSSGENIVFLSAAGNITGCKLLFVTKQGMMKLVDTSEFEA 648

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT-----------------------GDHVAVVGENRKL 670
            ++K     K++  + +  ++K                           +V V  EN   
Sbjct: 649 -SKKTVAATKLADGDSIAAILKTDATVEVYSRFNYDGSMAEDEVIESSQNVVVRTENGVF 707

Query: 671 LIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           L F + +IP+  +   GVR     KD  + DV      E       +     ++ +    
Sbjct: 708 LKFPLTEIPQKKKNAVGVRGIKLVKDDTVDDVYLIGNTED-----VSTEYCGKTIDLGRM 762

Query: 729 WLGKRGGVGSLV 740
            L  R   G+ V
Sbjct: 763 KLAHRDTKGTKV 774


>gi|168215695|ref|ZP_02641320.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens NCTC 8239]
 gi|182382335|gb|EDT79814.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens NCTC 8239]
          Length = 979

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/746 (29%), Positives = 383/746 (51%), Gaps = 38/746 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N     + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++    +   
Sbjct: 5   NIEIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAF 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD AA
Sbjct: 65  PDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT GIAVG+
Sbjct: 125 AMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGL 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T+IP HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG ++   ++++ +Y  G 
Sbjct: 185 STNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGG-VLIGEKTLLSAYETGE 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    +  + DIRD
Sbjct: 244 GKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRD 303

Query: 304 ESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES       +    +++D    D +++ ++  +D++     NM  L+    P+ M L  I
Sbjct: 304 ESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALAD-GKPETMGLKTI 362

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           +  ++ H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR           +
Sbjct: 363 ISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENL 422

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           VS+F  T+ Q +AIL L L  L  LE    + E   L  + + +  +L +       I  
Sbjct: 423 VSKFGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKD 482

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++EV E++        RRT   E     K  L++ ++ +  + V +SN G+I+      
Sbjct: 483 ELKEVAEVYGDE-----RRTALIEDESEAKIDLEELIVAE-DVMVTLSNEGFIKKIPLKT 536

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
               +VD + + ++EGD LK  + ++T D + + +  G  Y +   ++   +   +  +L
Sbjct: 537 YNRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERL 596

Query: 593 LIDLN----HNQDIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              +      ++ I+       +        +++ G        + +    K    +K+ 
Sbjct: 597 EDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK-LMAIKLK 655

Query: 646 SEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           +++ +  V  +        V +   N    + S  ++    R   GV+L   K G     
Sbjct: 656 NDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLKSGNQIKS 715

Query: 701 ICFKICEG--LTWIDSAGRSYNRSEN 724
           I F          I    +   ++ +
Sbjct: 716 IRFVDNYEYKEFIIGINKKGNIKTFS 741



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 69/250 (27%), Gaps = 30/250 (12%)

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
             V +       +  +             +    +  ++   I+  S  GK +  PA  L
Sbjct: 717 RFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEKVKVNSFRNIIAFSNKGKVFKFPAY-L 775

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIAN 634
           L          L+     ++ I+     +          +   S +G        E +  
Sbjct: 776 LQNTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGE 835

Query: 635 TRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
                 +   + ++++  V +      V +V +N   + FS   I  M R   GV   S 
Sbjct: 836 FNNQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIKFSATAINPMGRVASGVTGISL 895

Query: 693 KDG-GISDVICFKICEGLT--------------------WIDSAGRSYNRSENDLLGWLG 731
           KD   +         EG+                      +  + +      N     L 
Sbjct: 896 KDDNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYEKLVLESKQKEKAEVNIEDIKLQ 955

Query: 732 KRGGVGSLVP 741
            R G GS + 
Sbjct: 956 NRAGRGSSLM 965


>gi|110803503|ref|YP_699348.1| DNA topoisomerase IV subunit A [Clostridium perfringens SM101]
 gi|110684004|gb|ABG87374.1| DNA gyrase/topoisomerase IV, A subunit family protein [Clostridium
           perfringens SM101]
          Length = 979

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 217/746 (29%), Positives = 382/746 (51%), Gaps = 38/746 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N     + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++    +   
Sbjct: 5   NIEIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAF 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD AA
Sbjct: 65  PDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT GIAVG+
Sbjct: 125 AMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGL 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T+IP HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG ++   ++++ +Y  G 
Sbjct: 185 STNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGG-VLIGEKTLLSAYETGE 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    +  + DIRD
Sbjct: 244 GKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRD 303

Query: 304 ESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES       +    +++D    D +++ ++  +D++     NM  L+    P+ M L  I
Sbjct: 304 ESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALAD-GKPETMGLKTI 362

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           +  ++ H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR           +
Sbjct: 363 ISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENL 422

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           V +F  T+ Q +AIL L L  L  LE    + E   L  + + +  +L +       I  
Sbjct: 423 VLKFGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKD 482

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++EV E++        RRT   E     K  L++ ++ +  + V +SN G+I+      
Sbjct: 483 ELKEVAEVYGDE-----RRTALIEDESEAKIDLEELIVAE-DVMVTLSNEGFIKKIPLKT 536

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
               +VD + + ++EGD LK  + ++T D + + +  G  Y +   ++   +   +  +L
Sbjct: 537 YNRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERL 596

Query: 593 LIDLN----HNQDIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              +      ++ I+       +        +++ G        + +    K    +K+ 
Sbjct: 597 EDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK-LMAIKLK 655

Query: 646 SEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           +++ +  V  +        V +   N    + S  ++    R   GV+L   K G     
Sbjct: 656 NDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLKSGNQIKS 715

Query: 701 ICFKICEG--LTWIDSAGRSYNRSEN 724
           I F          I    +   ++ +
Sbjct: 716 IRFVDNYEYKEFIIGINKKGNIKTFS 741



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 68/250 (27%), Gaps = 30/250 (12%)

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
             V +       +  +             +    +  ++   I+  S  GK +  PA  L
Sbjct: 717 RFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEKVKVNSFRNIIAFSNKGKVFKFPAY-L 775

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIAN 634
           L          L+     ++ I+     +          +   S +G        E +  
Sbjct: 776 LQNTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGE 835

Query: 635 TRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
                 +   + ++++  V +      V +V +N   + F    I  M R   GV   S 
Sbjct: 836 FNNQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIKFLATAINPMGRIASGVTGISL 895

Query: 693 KDG-GISDVICFKICEGLT--------------------WIDSAGRSYNRSENDLLGWLG 731
           KD   +         EG+                      +  + +      N     L 
Sbjct: 896 KDDNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYEKLVLESKQKEKAEVNIEDIKLQ 955

Query: 732 KRGGVGSLVP 741
            R G GS + 
Sbjct: 956 NRAGRGSSLM 965


>gi|18311050|ref|NP_562984.1| DNA topoisomerase IV subunit A [Clostridium perfringens str. 13]
 gi|182624022|ref|ZP_02951810.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens D str. JGS1721]
 gi|18145732|dbj|BAB81774.1| DNA topoisomerase IV subunit A [Clostridium perfringens str. 13]
 gi|177910915|gb|EDT73269.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens D str. JGS1721]
          Length = 979

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/746 (29%), Positives = 383/746 (51%), Gaps = 38/746 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N     + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++    +   
Sbjct: 5   NIEIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAF 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD AA
Sbjct: 65  PDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT GIAVG+
Sbjct: 125 AMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGL 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T+IP HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG ++   ++++ +Y  G 
Sbjct: 185 STNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGG-VLIGEKTLLSAYETGE 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    +  + DIRD
Sbjct: 244 GKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRD 303

Query: 304 ESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES       +    +++D    D +++ ++  +D++     NM  L+    P+ M L  I
Sbjct: 304 ESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALAD-GKPETMGLKTI 362

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           +  ++ H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR           +
Sbjct: 363 ISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENL 422

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           VS+F  T+ Q +AIL L L  L  LE    + E   L  + + +  +L +       I  
Sbjct: 423 VSKFGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKD 482

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++EV E++        RRT   E     K  L++ ++ +  + V +SN G+I+      
Sbjct: 483 ELKEVAEVYGDE-----RRTALIEDESEAKIDLEELIVAE-DVMVTLSNEGFIKKIPLKT 536

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
               +VD + + ++EGD LK  + ++T D + + +  G  Y +   ++   +   +  +L
Sbjct: 537 YNRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERL 596

Query: 593 LIDLN----HNQDIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              +      ++ I+       +        +++ G        + +    K    +K+ 
Sbjct: 597 EDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK-LMAIKLK 655

Query: 646 SEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           +++ +  V  +        V +   N    + S  ++    R   GV+L   K G     
Sbjct: 656 NDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLKSGNQIKS 715

Query: 701 ICFKICEG--LTWIDSAGRSYNRSEN 724
           I F          I    +   ++ +
Sbjct: 716 IRFVDNYEYKEFIIGINKKGNIKTFS 741



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 69/250 (27%), Gaps = 30/250 (12%)

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
             V +       +  +             +    +  ++   I+  S  GK +  PA  L
Sbjct: 717 RFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEKVKVNSFRNIIAFSNKGKVFKFPAY-L 775

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIAN 634
           L          L+     ++ I+     +          +   S +G        E +  
Sbjct: 776 LQNTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGE 835

Query: 635 TRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
                 +   + ++++  V +      V +V +N   + FS   I  M R   GV   S 
Sbjct: 836 FNNQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIKFSATAINPMGRVASGVTGISL 895

Query: 693 KDG-GISDVICFKICEGLT--------------------WIDSAGRSYNRSENDLLGWLG 731
           KD   +         EG+                      I  + +      N     L 
Sbjct: 896 KDDNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYEKLILESKQKEKAEVNIEDIKLQ 955

Query: 732 KRGGVGSLVP 741
            R G GS + 
Sbjct: 956 NRAGRGSSLM 965


>gi|168205876|ref|ZP_02631881.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens E str. JGS1987]
 gi|170662606|gb|EDT15289.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens E str. JGS1987]
          Length = 979

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/746 (29%), Positives = 384/746 (51%), Gaps = 38/746 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N     + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++    +   
Sbjct: 5   NIEIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAF 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD AA
Sbjct: 65  PDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT GIAVG+
Sbjct: 125 AMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGL 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T+IP HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG ++   ++++ +Y  G 
Sbjct: 185 STNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGG-VLIGEKTLLSAYETGE 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    +  + DIRD
Sbjct: 244 GKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRD 303

Query: 304 ESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES       +    +++D    D +++ ++  +D++     NM  L+    P+ M L  I
Sbjct: 304 ESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALAD-GKPETMGLKTI 362

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           +  ++ H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR           +
Sbjct: 363 ISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENL 422

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           VS+F  T+ Q +AIL L L  L  LE    + E   L  + + +  +L +       I  
Sbjct: 423 VSKFGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKD 482

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++EV E++        RRT   E     K  L++ ++ +  + V +SN G+I+      
Sbjct: 483 ELKEVAEVYGDE-----RRTALIEDESEAKIDLEELIVAE-DVMVTLSNEGFIKKIPLKT 536

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
               +VD + + ++EGD LK  + ++T D + + +  G  Y +   +++  +   +  +L
Sbjct: 537 YNRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVVDKKWKDKGERL 596

Query: 593 LIDLN----HNQDIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              +      ++ I+       +        +++ G        + +    K    +K+ 
Sbjct: 597 EDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK-LMAIKLK 655

Query: 646 SEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           +++ +  V  +        V +   N    + S  ++    R   GV+L   K G     
Sbjct: 656 NDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLKSGNQIKS 715

Query: 701 ICFKICEG--LTWIDSAGRSYNRSEN 724
           I F          I    +   ++ +
Sbjct: 716 IRFVDNYEYKEFIIGINKKGNIKTFS 741



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 68/250 (27%), Gaps = 30/250 (12%)

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
             V +       +  +             +    +  ++   I+  S  GK +  PA  L
Sbjct: 717 RFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEKVKVNSFRNIIAFSNKGKVFKFPAY-L 775

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIAN 634
           L          L+     ++ I+     +          +   S +G        E +  
Sbjct: 776 LQNTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGE 835

Query: 635 TRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
                 +   + ++++  V +      V +V +N   + F    I  M R   GV   S 
Sbjct: 836 FNNQIAYKFKTPKDELINVDINFENATVILVTKNGMGIKFLATAINPMGRVASGVTGISL 895

Query: 693 KDG-GISDVICFKICEGLT--------------------WIDSAGRSYNRSENDLLGWLG 731
           KD   +         EG+                      I  + +      N     L 
Sbjct: 896 KDDNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYEKLILESKQKEKAEVNIEDIKLQ 955

Query: 732 KRGGVGSLVP 741
            R G GS + 
Sbjct: 956 NRAGRGSSLM 965


>gi|110799869|ref|YP_696748.1| DNA topoisomerase IV subunit A [Clostridium perfringens ATCC 13124]
 gi|168212895|ref|ZP_02638520.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens CPE str. F4969]
 gi|110674516|gb|ABG83503.1| DNA gyrase/topoisomerase IV, A subunit family protein [Clostridium
           perfringens ATCC 13124]
 gi|170715492|gb|EDT27674.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens CPE str. F4969]
          Length = 979

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/746 (29%), Positives = 383/746 (51%), Gaps = 38/746 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N     + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++    +   
Sbjct: 5   NIEIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAF 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD AA
Sbjct: 65  PDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT GIAVG+
Sbjct: 125 AMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGL 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T+IP HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG ++   ++++ +Y  G 
Sbjct: 185 STNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGG-VLIGEKTLLSAYETGE 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    +  + DIRD
Sbjct: 244 GKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRD 303

Query: 304 ESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES       +    +++D    D +++ ++  +D++     NM  L+    P+ M L  I
Sbjct: 304 ESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALAD-GKPETMGLKTI 362

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           +  ++ H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR           +
Sbjct: 363 ISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENL 422

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           VS+F  T+ Q +AIL L L  L  LE    + E   L  + + +  +L +       I  
Sbjct: 423 VSKFGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKD 482

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++EV E++        RRT   E     K  L++ ++ +  + V +SN G+I+      
Sbjct: 483 ELKEVAEVYGDE-----RRTALIEDESEAKIDLEELIVAE-DVMVTLSNEGFIKKLPLKT 536

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
               +VD + + ++EGD LK  + ++T D + + +  G  Y +   ++   +   +  +L
Sbjct: 537 YNRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERL 596

Query: 593 LIDLN----HNQDIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              +      ++ I+       +        +++ G        + +    K    +K+ 
Sbjct: 597 EDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK-LMAIKLK 655

Query: 646 SEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           +++ +  V  +        V +   N    + S  ++    R   GV+L   K G     
Sbjct: 656 NDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLKSGNQIKS 715

Query: 701 ICFKICEG--LTWIDSAGRSYNRSEN 724
           I F          I    +   ++ +
Sbjct: 716 IRFVDNYEYKEFIIGINKKGNIKTFS 741



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 67/250 (26%), Gaps = 30/250 (12%)

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
             V +       +  +             +    +  ++   I+  S  GK +  PA  L
Sbjct: 717 RFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEKVKVNSFRNIIAFSNKGKVFKFPAY-L 775

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIAN 634
           L          L+     ++ I+     +          +   S +G        E +  
Sbjct: 776 LQNTEESNISDLVDGFEKDEIIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGE 835

Query: 635 TRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
                 +   + ++++  V +      V +V +N   + F    I  M R   GV   S 
Sbjct: 836 FNNQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIKFLATAINPMGRVASGVTGISL 895

Query: 693 KDG-GISDVICFKICEGLT--------------------WIDSAGRSYNRSENDLLGWLG 731
           KD   +         E +                      I  + +      N     L 
Sbjct: 896 KDDNKVIFGKVIPPSEDIDDKTLEAYNDYKKELTSNYEKLILESKQKEKAEVNIEDIKLQ 955

Query: 732 KRGGVGSLVP 741
            R G GS + 
Sbjct: 956 NRAGRGSSLM 965


>gi|168208770|ref|ZP_02634395.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713041|gb|EDT25223.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens B str. ATCC 3626]
          Length = 979

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/746 (29%), Positives = 383/746 (51%), Gaps = 38/746 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N     + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++    +   
Sbjct: 5   NIEIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAF 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD AA
Sbjct: 65  PDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT GIAVG+
Sbjct: 125 AMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGL 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T+IP HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG ++   ++++ +Y  G 
Sbjct: 185 STNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGG-VLIGEKTLLSAYETGE 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    +  + DIRD
Sbjct: 244 GKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRD 303

Query: 304 ESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES       +    +++D    D +++ ++  +D++     NM  L+    P+ M L  I
Sbjct: 304 ESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALAD-GKPETMGLKTI 362

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           +  ++ H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR           +
Sbjct: 363 ISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKYAHENL 422

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           VS+F  T+ Q +AIL L L  L  LE    + E   L  + + +  +L +       I  
Sbjct: 423 VSKFGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKD 482

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++EV E++        RRT   E     K  L++ ++ +  + V +SN G+I+      
Sbjct: 483 ELKEVAEVYGDE-----RRTALIEDESEAKIDLEELIVAE-DVMVTLSNEGFIKKIPLKT 536

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
               +VD + + ++EGD LK  + ++T D + + +  G  Y +   ++   +   +  +L
Sbjct: 537 YNRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERL 596

Query: 593 LIDLN----HNQDIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              +      ++ I+       +        +++ G        + +    K    +K+ 
Sbjct: 597 EDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK-LMAIKLK 655

Query: 646 SEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           +++ +  V  +        V +   N    + S  ++    R   GV+L   K G     
Sbjct: 656 NDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLKSGNQIKS 715

Query: 701 ICFKICEG--LTWIDSAGRSYNRSEN 724
           I F          I    +   ++ +
Sbjct: 716 IRFVDNYEYKEFIIGINKKGNIKTFS 741



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 69/250 (27%), Gaps = 30/250 (12%)

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
             V +       +  +             +    +  ++   I+  S  GK +  PA  L
Sbjct: 717 RFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEKVKVNSFRNIIAFSNKGKVFKFPAY-L 775

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIAN 634
           L          L+     ++ I+     +          +   S +G        E +  
Sbjct: 776 LQNTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGE 835

Query: 635 TRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
                 +   + ++++  V +      V +V +N   + FS   I  M R   GV   S 
Sbjct: 836 FNNQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIKFSATAINPMGRVASGVTGISL 895

Query: 693 KDG-GISDVICFKICEGLT--------------------WIDSAGRSYNRSENDLLGWLG 731
           KD   +         EG+                      I  + +      N     L 
Sbjct: 896 KDDNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYEKLILESKQKEKAEVNIEDIKLQ 955

Query: 732 KRGGVGSLVP 741
            R G GS + 
Sbjct: 956 NRAGRGSSLM 965


>gi|126695342|ref|YP_001090228.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
 gi|126542385|gb|ABO16627.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
          Length = 813

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 209/735 (28%), Positives = 364/735 (49%), Gaps = 20/735 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N  ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MDKKNFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  +YP + G GNFG++D D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A    L+ +  + V F + ++   +EP V P++ P LL NG+SGIAVGMAT+
Sbjct: 121 TETRLASIAHKGFLEEIGSETVSFSNNFDGSQTEPDVLPAQLPFLLLNGSSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI ++ +AL+ N +IS +KL + I GPDFPTGG ++ S  +I E Y  G+G  
Sbjct: 181 IPPHNLGEIVDSLVALVKNNDISNKKLSKIIQGPDFPTGGELIHS-AAIEELYETGKGSL 239

Query: 251 RVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV           +++TE+PYQ+ K+  IEK+AEL+ + +I  + DIRDES
Sbjct: 240 TIRGVINMEEVNLGKGKHKKNALIITELPYQISKAGWIEKLAELVNSGKIHGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    +  + +L++ +++  + ++T F      L     P  + L   L  +L
Sbjct: 300 DRDGMRIVIELKKDSNSELVISNLYKKTTLQTNFGAIFLALIK-GKPVQLSLKKYLNFFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
             R E + +R+ + ++    ++EIL+GL  A  NI +++AII   +            F 
Sbjct: 359 EFREETIRKRTFYFLKNTLEKLEILEGLSKATKNIKKVVAIIEESENSVEAKSKLIKNFF 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  ++L++ LR L  LE+ QI +E+ NL  +K     LLN  +     +  E+  +
Sbjct: 419 LSEKQASSVLDMPLRKLTNLEKNQIDNEIINLEEKKSYFQKLLNERELLLELLIEELLIL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K+ ++        +         +           +   + I NR +++ +   +     
Sbjct: 479 KKKYNVKRKTKVIKNINQNKELENLNNQILEEFINKKTKLCIDNRLYLKKMILGNYKKSF 538

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           ++        +  K   +     +++ ++  GK + +   + ++     +   L      
Sbjct: 539 EVVNKFIDNKNIQKFICNIEKNIKLIGITNTGKVFNIDWESNVNNDYKLDNKILGNIHPS 598

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
                 +   +    L +++S G    V   E +  + +  T  K+ +  K         
Sbjct: 599 EIINFHSIKKEIKNYLCILNSDGRFKKVLFDEDMIKSNRSFTITKLKNNLKTIDSFISNK 658

Query: 658 GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWID 713
              + ++    ++  F++    +   S+  +G+ L        I     F   E +  I 
Sbjct: 659 NKDLIILTSIGRIFRFNLSNKILTPTSKQSQGLILAKLLPSETIVSCCPFDNGENIFLIS 718

Query: 714 SAGRSYNRSENDLLG 728
             G+ +  + N++  
Sbjct: 719 RQGKIFCINSNEIYY 733



 Score = 37.4 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 62/188 (32%), Gaps = 11/188 (5%)

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +         K       I                   + S   +    K       +  
Sbjct: 598 SEIINFHSIKKEIKNYLCILNSDGRFKKVLFDEDMIKSNRSF--TITKLKNNLKTIDSFI 655

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI-DLNHNQDIVTAFVYDSTCKLL 615
           ++    +++L++ G+ +     N +      ++  L++  L  ++ IV+   +D+   + 
Sbjct: 656 SNKNKDLIILTSIGRIFRFNLSNKILTPTSKQSQGLILAKLLPSETIVSCCPFDNGENIF 715

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLK----VSSEEKMKLVVKVTGDHVA-VVGENRKL 670
           ++S +G  F +  +EI  +      +L     + ++        VT +H   +     K 
Sbjct: 716 LISRQGKIFCINSNEIYYSNEYSLGYLNEKTQLKND---CFFKIVTSNHYLDIETNKNKS 772

Query: 671 LIFSIDQI 678
               ++++
Sbjct: 773 ARLDLNKL 780


>gi|297180057|gb|ADI16282.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), a
           subunit [uncultured bacterium HF0010_16H03]
          Length = 701

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 249/703 (35%), Positives = 422/703 (60%), Gaps = 24/703 (3%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GLD G+ +KKSAR VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+
Sbjct: 1   MSELGLDAGSKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGS 60

Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            D   S AA RYTE+++T+ ++L++  +    VD++  ++    EPV+FPSK P++L NG
Sbjct: 61  QDDPKSFAAMRYTESKLTKFSDLLISELKSGTVDWQPNFDGSLLEPVIFPSKIPSILLNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           TSGIAVGMAT IPSHN+ E+ +A + +++NP+  I  LL+ I GPDF     I+ S+E +
Sbjct: 121 TSGIAVGMATDIPSHNINEVIDATIYILENPKAEINDLLKIIKGPDFANKAPIIASQEEL 180

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E Y+ GRGGF+ +A W  E+       IV+  +PYQ   S+++E+IA+ ++ K+IP++ 
Sbjct: 181 EEIYKSGRGGFKAQAHWVKEKNN-----IVINALPYQASGSKILEQIADQMLKKKIPMVV 235

Query: 300 DIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           D+ DE       R+V+  K+  ++ D +M  +F  +D++  + +NMN++S+   P+V  L
Sbjct: 236 DLADEGDHKEPVRLVITLKSNRVNADDVMNHLFASTDLQKNYRVNMNLISLQGGPKVFSL 295

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             ++KEWL  R+  + R+   R+  ++ R+ IL+GLLI YL++D++I IIR  D+PK  +
Sbjct: 296 VEVIKEWLTFRKNTVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKDI 355

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              F L++ Q +AIL ++LR L KLE+ +++ E D LL E+ +I+ +LNS  +    I  
Sbjct: 356 TKAFKLSDIQANAILEIKLRQLAKLEQIKLEQERDALLEEQNEIEKILNSKTRLKTLIKK 415

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K+ F +      R+++        K   ++  +  E ITVV+S  GWIRS K H 
Sbjct: 416 ELLEIKDGFGEDRKSPIRQSS------DAKVFSEEDTLVTESITVVLSEAGWIRSAKGHE 469

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           +D S+L ++  D L+      +    + L ++GKAY+LP+ +L S RG G+ I   +  +
Sbjct: 470 IDPSSLAYRGEDKLQDFCQGKSNQIAVFLDSNGKAYSLPSHSLPSARGMGDPITGRVSAD 529

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                ++  + +   K +++++ G  +I E S +++N + G+ F+K+ ++ ++  V+KV 
Sbjct: 530 SGVKFISTVIGNDIDKFMIMNTAGYGYISEFSNMVSNKKSGRAFMKLPNKAELLKVIKVR 589

Query: 658 GDHV--AVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEG 708
            DHV  A V    +LLIF ID++P + +GKG ++ +        K+  +S      +   
Sbjct: 590 EDHVYIAAVSNIGRLLIFKIDELPVLGKGKGNKIINIPTPKFLAKEEYMSHAQLISLSSS 649

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           L   +S  R       DL  ++  R   G+++P+G+ +    +
Sbjct: 650 LRI-ESGKRFLTLKLKDLQNYISSRAKRGNMLPQGYRKVDLMV 691


>gi|182418313|ref|ZP_02949608.1| DNA gyrase subunit A [Clostridium butyricum 5521]
 gi|237666895|ref|ZP_04526880.1| DNA gyrase subunit A [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377695|gb|EDT75239.1| DNA gyrase subunit A [Clostridium butyricum 5521]
 gi|237658094|gb|EEP55649.1| DNA gyrase subunit A [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 971

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 236/751 (31%), Positives = 387/751 (51%), Gaps = 54/751 (7%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    + N+  + L  A+ E YL YA+   KERA+PD+RDG KPVHRRI++    +   
Sbjct: 6   ENTIPKDNNIIGIPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAHMLKAF 65

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVY+++V LAQ F  R PLI G GN+G+IDGDSAA
Sbjct: 66  PDRPYYKSARIVGDILGKYHPHGDSSVYEAMVILAQDFSTRLPLIEGHGNWGSIDGDSAA 125

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+  +A  +L+ +D+D VD    Y++ + EP V PS++PNLL NG  GIAVG+
Sbjct: 126 AMRYTEARLAPIAMEMLRDIDKDTVDMVPNYSDSEMEPKVLPSRYPNLLVNGAFGIAVGL 185

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ +  LA IDN +I+ ++L+EY+ GPD PTGGI++   +S++ +Y  G 
Sbjct: 186 ATNIPPHNLGEVTDGVLAYIDNNDITTKELMEYVKGPDLPTGGILI-GEKSLLSAYETGE 244

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G    RA+  +E++  G   IV+TE PY+  KS++++ I+E+   KR    +  + DIRD
Sbjct: 245 GKVPYRAKTNIEKLENGRVGIVITEFPYRRNKSKILQTISEMTGDKRHAKVLEGITDIRD 304

Query: 304 ESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES  +    +    +S+D    + +++ +F  +D++     NM  L     P+ M L  I
Sbjct: 305 ESDRNGIRAVIEFKKSVDEDNAEKILKYLFKKTDLQCNISFNMVAL-SNGKPETMGLKTI 363

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVM 417
           +K ++ H++E++ RR+   +    +R  I++G + A   +DE+IA IR+ +  K     +
Sbjct: 364 IKHYVEHQKEIVTRRTKKELDTATKRFHIVEGFIKAIDVLDEVIATIRSSNSKKNASENL 423

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + +F  TE Q  AIL L L  L  LE    + E   L    +K++ +L S K+    I  
Sbjct: 424 IDKFGFTELQAQAILELMLYRLTGLEIKVFQKEYAELEKLIKKLEKILASEKELLRVIKT 483

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E++EV + +S +     RRTT             + +I  E + + +SN G+I+ +   +
Sbjct: 484 ELKEVCDKYSDA-----RRTTIIS-DDTKSKIDVEELIVVEEVMITVSNDGFIKRIPLKN 537

Query: 538 V-----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
                 D   + ++EGD LK  + ++T D +L+ +  G  Y     N+   R   +  +L
Sbjct: 538 YNRSNSDPDDIEYREGDYLKYLISSNTKDNLLIFTNAGYMYQTKGINIPELRWKEKGERL 597

Query: 593 LIDLN----HNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              +      ++ IV     D          ++S G   I    +   +  K    LK+ 
Sbjct: 598 DGVIKSLNLDDEKIVGIISLDNFTPGKGFRFITSGGGIKISGLDKFQTSYTK-LQALKLR 656

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSID-------QIPEMSRGKGVRLQ----SYKD 694
             +++  V  +  +         K L F+         +IPE+       L     +  +
Sbjct: 657 DTDELINVSLIDLED------ESKFLKFTTRNELEFTLEIPEVEDATRNILPTQLFNLPE 710

Query: 695 GGISDVICFKICEGLTW----IDSAGRSYNR 721
             I  V+     E L +    +  + +   +
Sbjct: 711 DDI--VVDVNDSEELEYFELNLGISEKGKLK 739



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 32/211 (15%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI-DLNHNQDIV---TAFVYDSTC 612
             +T+++L+ +  G  Y +P   + +      +I   I  +  N+ I+   +   YD   
Sbjct: 753 TKSTEQLLIFTNTGFIYKVPVFMMKNIFTKDMSIDQFIGKIGRNEKIIRIASVASYDEDR 812

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS------SEEKMKLVVK--VTGDHVAVV 664
            +   +  G        E          F K          +++  V    ++  ++ +V
Sbjct: 813 CIYTFTKTGMVKKTLLKEYEG------EFFKQPCHKFKYEFDELVSVDIDKISLGYLIMV 866

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI------------CFKICEGLTW 711
            +    + F ++ +  M +   GV   S KD                      + E  T 
Sbjct: 867 TKKGMAIRFPVENVNSMGKIASGVTGISLKDDDEVIYGKYYSNYISNGQNSISLNEDNTE 926

Query: 712 IDSAGRSYNRSE-NDLLGWLGKRGGVGSLVP 741
           +    ++  ++E       L  R G G+ V 
Sbjct: 927 LILTSKNKTKTEVRIRDIKLQNRAGRGTSVM 957


>gi|157412343|ref|YP_001483209.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
 gi|157386918|gb|ABV49623.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
          Length = 813

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 206/742 (27%), Positives = 364/742 (49%), Gaps = 24/742 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+ ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MNKKNITSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  +YP + G GNFG++D D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSTKYPTLEGHGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A    L+ +  + V F + ++    EP + P++ P LL NG+SGIAVGMAT+
Sbjct: 121 TETRLAPIAHKGFLEEIGSETVSFSNNFDGSQKEPDILPAQLPFLLLNGSSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  +AL+ N +IS +KL   I GPDFPTGG ++ S   I E Y  G+G  
Sbjct: 181 IPPHNLGEIVDGLVALVKNKDISDKKLFNIIKGPDFPTGGELIYSHA-IKELYETGKGSI 239

Query: 251 RVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV           I++TE+PYQ+ K+  IEK+AEL+ + +I  + DIRDES
Sbjct: 240 TIRGVVNMEEVYLGKGKHKKNAIIITELPYQINKAGWIEKLAELVNSGKIIGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    +  + +L++ +++  + ++T F      L     P+ + L   L  +L
Sbjct: 300 DRDGMRIVIELKKDSNSELVISNLYKQTTLQTNFGAIFLALIK-GKPKQLNLKEYLNYFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
             R E + +R+ + ++    ++EI +GL  A  NI ++I II   +  +         F 
Sbjct: 359 EFREETIRKRTIYFLKNTLDKLEISEGLSKATKNIKKVIGIIEESENSEKARSKLIENFF 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +++L++ L+ L  LE+ +I  E+ +L  +K     LLN        +  E+  +
Sbjct: 419 LSEKQANSVLDMPLKKLTNLEKNKIDDEIKHLKEKKNYFQKLLNERGLLLELLVEELLIL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K+ ++        +                     +   + I NR +++ +   +     
Sbjct: 479 KKKYNVLRKTKVIKNINQNEELETLNNQILEDFINKKTKLYIDNRLYLKRMILGNYKKSF 538

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           ++        +  K   +     +++ ++  GK + +   + ++     +   L     +
Sbjct: 539 EVVNKIIDNKNIQKFICNIEKNIKLIGITNTGKVFNIDWESSINKDYKLDNKILGNIHAN 598

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                 +   ++   L +++S G    V   E +  + +  T  K+ +  K         
Sbjct: 599 EIINFHSIKKETKNYLCILNSDGRFKKVLFDEDMIKSNRSFTITKLKNNLKTIDSFISNE 658

Query: 659 -DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWID 713
             ++ ++    ++  F++    +   S+  +G+ +        I     F   E +  I 
Sbjct: 659 SKYLMILTSIGRIFKFNLSNKFLTPTSKQSQGLIITKLLPTEKIVSCCTFHDGENIFLIS 718

Query: 714 SAGRSYNRSENDL----LGWLG 731
             G+ +  + N++       LG
Sbjct: 719 KQGKIFCINSNEIYCSNEYRLG 740


>gi|297243586|ref|ZP_06927517.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
 gi|296888337|gb|EFH27078.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
          Length = 887

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 210/844 (24%), Positives = 362/844 (42%), Gaps = 109/844 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M  M L  
Sbjct: 13  DPRKVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+ KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DHAYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   +  +   ++ED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARLAPASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  ++ +P+ +++ L++ + GPD+P+GGII+  R  I E+Y  GRG
Sbjct: 192 TNMATHNLGEVVAAAKYVMKHPDATLDDLMKLVPGPDWPSGGIIIG-RSGIREAYATGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
            F  R+   +E +      I+VTE+P+ V   R++E+I++ + ++++  +    D +   
Sbjct: 251 AFTTRSTTHIENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP+ ++  +F  + ++  F +N   L     P  M L  +L  W++H
Sbjct: 311 NGTRIVIEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVD-GRPHTMGLRELLDVWISH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           RR V+ RRS FR +    R+ ++ GLL+A L+IDE+I +IR+ +        ++  F L 
Sbjct: 370 RRTVVRRRSEFRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTKLIKVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   ++++E D+LL + E+++ +L+S  +  N +  ++    +
Sbjct: 430 EIQAQYILDLRLRRLTKMSRIELEAERDDLLKKIEELNQILSSEAKLDNVVIADMDTAVK 489

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATL---------------------------------- 510
            +        RRT   + +     T                                   
Sbjct: 490 QWDTP-----RRTILLDENEDGSFTPVASSINKNSEDIAIKAVQSANKITSTQADLAAAA 544

Query: 511 -------------QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI--AL 555
                            +  EP  V +S  G I       ++    H     +       
Sbjct: 545 NAARKTGEADASSVAMQLSDEPCAVALSTSGLIARTSIAVLEHWNSHNNNVFNTPCKTMF 604

Query: 556 HAHTTDRILLLSTDGKAYTLPAGN---------------LLSGRGHGEAIQLLIDLNHNQ 600
              T     L+++ G+       +                              D    +
Sbjct: 605 ETTTRSTCALVTSSGRLVLAHVADLPQLNYEEGKPALLSHGVKAQELLTSTQSTDPVRGE 664

Query: 601 DIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +V+A  +D++     L + +  G             T    + + +  ++ +       
Sbjct: 665 RVVSAIAFDASQNATPLAIGTRNGVVKRWNFE--APTTMDSWSIIDLKDDDTVIAAAPAE 722

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW---- 711
            +  +  +  +  LL F   Q+    R   G+      +G           + + W    
Sbjct: 723 DNDRLVFISSDSSLLTFDAKQVRPQGRTAGGMAGIRLAEGAKVATFAVVPEKSIEWHYEE 782

Query: 712 ----------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                                 +        +     +     R   G    +       
Sbjct: 783 GENGLFSASGTVVFTVAGDSEALPGTENGSAKITPFDMYPTKGRATGGVRSQRFLKGQDT 842

Query: 750 FLSS 753
            + +
Sbjct: 843 LIHA 846


>gi|325972891|ref|YP_004249955.1| DNA gyrase subunit A [Mycoplasma suis str. Illinois]
 gi|323651493|gb|ADX97575.1| DNA gyrase, subunit A [Mycoplasma suis str. Illinois]
          Length = 894

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/764 (29%), Positives = 389/764 (50%), Gaps = 60/764 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   NV+   +    +E +L Y+LS I  RA+PDL+DG KPVHRRI++A  E  L   + 
Sbjct: 17  LPSSNVENKDISVVCDESFLNYSLSVITSRALPDLKDGLKPVHRRILYAAYEEKLFNDSR 76

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSA +VG V+G  HPHGD+S+YD+LVRL+Q F  RYPL+ GQGNFG+IDGD  AA RY
Sbjct: 77  FKKSATLVGAVMGSYHPHGDKSIYDALVRLSQDFKMRYPLLEGQGNFGSIDGDVPAAMRY 136

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++++  E  L G+ E+ VDF D Y+    EP + P   P++L NG+ GIAVGMAT I
Sbjct: 137 TEIKLSKFGEKFLSGIKEECVDFVDNYDGSKQEPSILPVIVPSILLNGSEGIAVGMATKI 196

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+C+A +ALIDNPE+  E+ +EYI GPDFPTGG I+   ES+   +  G G   
Sbjct: 197 PPHNLREVCDAIIALIDNPELQDEQFIEYIKGPDFPTGGEII-GIESVKRYHSKGLGKII 255

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-----------IIAKRIPLLED 300
           +R++  ++        +++ EIP+ ++K+ LI+KIA+L                   L++
Sbjct: 256 LRSKVEIDANKH---QLIIKEIPFGIKKADLIKKIADLAYEGKNAKSRRTNEILQRFLQN 312

Query: 301 IRDESA--EDVRIVLFPKN--RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           IRDES   E +R+++  K   +  D   ++ +++  + ++  F +N+ +L     PQ++ 
Sbjct: 313 IRDESNLKEGIRLIIECKKGSKESDLKAVLNNLYKYARLQVTFAVNLTLLVD-GKPQLLG 371

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           +  I++ +L H+ ++L R++ F ++ + RR+ +L+G      N+DE+I II +ED P+ +
Sbjct: 372 IGAIIRNYLQHQLDMLQRKTRFNLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPEVI 431

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +  ++SLT  Q+  I +L LR L+K+E  ++ +ELD   A++++  +LL+   +Q+  I 
Sbjct: 432 IQEKYSLTPVQIKDIFDLPLRQLKKIEFLKLTNELDQKRAKRDEYQALLDDKNKQYENIK 491

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ E+K  F        R+T       A         I KE I + ++   +I ++   
Sbjct: 492 KELIEIKNEFKNDL----RKTLITPKGIAKITKWD--CIPKEDIILKVTQNNYIAAIPLD 545

Query: 537 SVDLSALHFKEGDSLKIALHAH---------TTDRILLLSTDGKAYTLPAGN-----LLS 582
            +DL+  +    +S                 + D + + +   + + L A          
Sbjct: 546 KIDLTNRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFTNYARVFKLKAHEIKISANKK 605

Query: 583 GRGHGEAIQLLIDLN-HNQDIVTAFVYDSTCK----------LLVVSSKGNAFIVEESEI 631
                + +  LI L   ++  V         +          LL  +  G    +   + 
Sbjct: 606 WSKKPQKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKDIDLLFATKFGFIRKISFYKF 665

Query: 632 I--ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID--QIPEMSRGKG 686
                 + GKT +++S  +++K V+K+  D  + +     K++ F     +     +  G
Sbjct: 666 FLEKKWKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKNKVIRFKSSILEAKRTRKTFG 725

Query: 687 VRLQSYKDGG----ISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           VR  + ++         +      +G   +        +  +  
Sbjct: 726 VRGINLRNDDGKIEGELISASSTYDGDQLLSLVESGKGKITSLD 769



 Score = 47.5 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 63/509 (12%), Positives = 140/509 (27%), Gaps = 56/509 (11%)

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I    +      + + R+ + EV R    +   E        R ++++  +I  +  P +
Sbjct: 376 IRNYLQHQLDMLQRKTRFNLREVQRRIHLLEGRETVV-----RNLDEVIRIITDEDNPEV 430

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL--NMNVLSMGRVPQVMP 356
                 S   V+I             +          + R        +L          
Sbjct: 431 IIQEKYSLTPVQIKDIFDLPLRQLKKIEFLKLTNELDQKRAKRDEYQALLDDKNKQYENI 490

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
              +++     + ++     + +  A   + + +    I               DK    
Sbjct: 491 KKELIEIKNEFKNDLRKTLITPKGIAKITKWDCIPKEDIILKVTQNNYIAAIPLDKIDLT 550

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
             +      +      +L +  L       +    +     K K   +  S  ++W++  
Sbjct: 551 NRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFTNYARVFKLKAHEIKISANKKWSKKP 610

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKS 535
            ++  +  +  K     +  +   E    ++       +   +   +   +       K 
Sbjct: 611 QKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKDIDLLFATKFGFIRKISFYKFFLEKK 670

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                +A+   E D LK  +  H    ILL S+  K     +  L + R         I+
Sbjct: 671 WKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKNKVIRFKSSILEAKRTRKTFGVRGIN 730

Query: 596 LNHNQ-----DIVTAFVYDSTCKLLVVSSKGNAFIVEES----------EIIANTR---- 636
           L ++      ++++A       +LL +   G   I              E    T+    
Sbjct: 731 LRNDDGKIEGELISASSTYDGDQLLSLVESGKGKITSLDSIKQEIVKVKEYDEETKQEVE 790

Query: 637 --------------------------KGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRK 669
                                     KG    K    EK+   V +   D + ++     
Sbjct: 791 KIIKQDKKDEDGELEYEIKLSKKWGGKGVLAYKNKENEKLIACVLIKDSDQILLMTNTDH 850

Query: 670 LLIFSIDQ--IPEMSRGKGVRLQSYKDGG 696
           +  F   Q  + +  R +G +L S K   
Sbjct: 851 INRFQASQISVRKTRRTEGSQLISLKPNE 879


>gi|325989384|ref|YP_004249083.1| Topoisomerase II subunit A [Mycoplasma suis KI3806]
 gi|323574469|emb|CBZ40119.1| Topoisomerase II subunit A [Mycoplasma suis]
          Length = 894

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/764 (29%), Positives = 389/764 (50%), Gaps = 60/764 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   NV+   +    +E +L Y+LS I  RA+PDL+DG KPVHRRI++A  E  L   + 
Sbjct: 17  LPSSNVENKDISVVCDESFLNYSLSVITSRALPDLKDGLKPVHRRILYAAYEEKLFNDSR 76

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSA +VG V+G  HPHGD+S+YD+LVRL+Q F  RYPL+ GQGNFG+IDGD  AA RY
Sbjct: 77  FKKSATLVGAVMGSYHPHGDKSIYDALVRLSQDFKMRYPLLEGQGNFGSIDGDVPAAMRY 136

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++++  E  L G+ E+ VDF D Y+    EP + P   P++L NG+ GIAVGMAT I
Sbjct: 137 TEIKLSKFGEKFLSGIKEECVDFVDNYDGSKQEPSILPVIVPSILLNGSEGIAVGMATKI 196

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+C+A +ALIDNPE+  E+ +EYI GPDFPTGG I+   ES+   +  G G   
Sbjct: 197 PPHNLREVCDAIIALIDNPELQDEQFIEYIKGPDFPTGGEII-GIESVKRYHSKGLGKII 255

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-----------IIAKRIPLLED 300
           +R++  ++        +++ EIP+ ++K+ LI+KIA+L                   L++
Sbjct: 256 LRSKVEIDANKH---QLIIKEIPFGIKKADLIKKIADLAYEGKNAKARRTNEILQRFLQN 312

Query: 301 IRDESA--EDVRIVLFPKN--RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           IRDES   E +R+++  K   +  D   ++ +++  + ++  F +N+ +L     PQ++ 
Sbjct: 313 IRDESNLKEGIRLIIECKKGSKESDLKAVLNNLYKYARLQVTFAVNLTLLVD-GKPQLLG 371

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           +  I++ +L H+ ++L R++ F ++ + RR+ +L+G      N+DE+I II +ED P+ +
Sbjct: 372 IGAIIRNYLQHQLDMLQRKTKFNLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPEVI 431

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +  ++SLT  Q+  I +L LR L+K+E  ++ +ELD   A++++  +LL+   +Q+  I 
Sbjct: 432 IQEKYSLTPVQIKDIFDLPLRQLKKIEFLKLTNELDQKRAKRDEYQALLDDKNKQYENIK 491

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ E+K  F        R+T       A         I KE I + ++   +I ++   
Sbjct: 492 KELIEIKNEFKNDL----RKTLITPKGIAKITKWD--CIPKEDIILKVTQNNYIAAIPLD 545

Query: 537 SVDLSALHFKEGDSLKIALHAH---------TTDRILLLSTDGKAYTLPAGN-----LLS 582
            +DL+  +    +S                 + D + + +   + + L A          
Sbjct: 546 KIDLTHRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFTNYARVFKLKAHEIKISANKK 605

Query: 583 GRGHGEAIQLLIDLN-HNQDIVTAFVYDSTCK----------LLVVSSKGNAFIVEESEI 631
                + +  LI L   ++  V         +          LL  +  G    +   + 
Sbjct: 606 WSKKPQKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKDIDLLFATKFGFIRKISFYKF 665

Query: 632 I--ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID--QIPEMSRGKG 686
                 + GKT +++S  +++K V+K+  D  + +     K++ F     +     +  G
Sbjct: 666 FLEKKWKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKNKVIRFKSSILEAKRTRKTFG 725

Query: 687 VRLQSYKDGG----ISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           VR  + ++         +      +G   +        +  +  
Sbjct: 726 VRGINLRNDDGKIEGELISASSTYDGDQLLSLVESGKGKITSLD 769



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/509 (12%), Positives = 140/509 (27%), Gaps = 56/509 (11%)

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I    +      + + ++ + EV R    +   E        R ++++  +I  +  P +
Sbjct: 376 IRNYLQHQLDMLQRKTKFNLREVQRRIHLLEGRETVV-----RNLDEVIRIITDEDNPEV 430

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL--NMNVLSMGRVPQVMP 356
                 S   V+I             +          + R        +L          
Sbjct: 431 IIQEKYSLTPVQIKDIFDLPLRQLKKIEFLKLTNELDQKRAKRDEYQALLDDKNKQYENI 490

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
              +++     + ++     + +  A   + + +    I               DK    
Sbjct: 491 KKELIEIKNEFKNDLRKTLITPKGIAKITKWDCIPKEDIILKVTQNNYIAAIPLDKIDLT 550

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
             +      +      +L +  L       +    +     K K   +  S  ++W++  
Sbjct: 551 HRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFTNYARVFKLKAHEIKISANKKWSKKP 610

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKS 535
            ++  +  +  K     +  +   E    ++       +   +   +   +       K 
Sbjct: 611 QKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKDIDLLFATKFGFIRKISFYKFFLEKK 670

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                +A+   E D LK  +  H    ILL S+  K     +  L + R         I+
Sbjct: 671 WKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKNKVIRFKSSILEAKRTRKTFGVRGIN 730

Query: 596 LNHNQ-----DIVTAFVYDSTCKLLVVSSKGNAFIVEES----------EIIANTR---- 636
           L ++      ++++A       +LL +   G   I              E    T+    
Sbjct: 731 LRNDDGKIEGELISASSTYDGDQLLSLVESGKGKITSLDSIKQEIVKVKEYDEETKQEVE 790

Query: 637 --------------------------KGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRK 669
                                     KG    K    EK+   V +   D + ++     
Sbjct: 791 KIIKQDKKDEDGELEYEIKLSKKWGGKGVLAYKNKENEKLIACVLIKDSDQILLMTNKDH 850

Query: 670 LLIFSIDQ--IPEMSRGKGVRLQSYKDGG 696
           +  F   Q  + +  R +G +L S K   
Sbjct: 851 INRFQASQISVRKTRRTEGSQLISLKPNE 879


>gi|298253939|ref|ZP_06977526.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
 gi|297532082|gb|EFH71057.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
          Length = 887

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 211/844 (25%), Positives = 362/844 (42%), Gaps = 109/844 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M  M L  
Sbjct: 13  DPRKVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+ KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DHAYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   +  +   ++ED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARLAPASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  ++ +P+ +++ L++ + GPD+P+GGII+  R  I E+Y  GRG
Sbjct: 192 TNMATHNLGEVVAAAKYVMKHPDATLDDLMKLVPGPDWPSGGIIIG-RSGIREAYATGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
            F  R+   +E +      I+VTE+P+ V   R++E+I++ + ++++  +    D +   
Sbjct: 251 AFTTRSTTHIENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP+ ++  +F  + ++  F +N   L     P  M L  +L  W++H
Sbjct: 311 NGTRIVIEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVD-GRPHTMGLRELLDVWISH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           RR V+ RRS FR +    R+ ++ GLL+A L+IDE+I +IR+ +        ++  F L 
Sbjct: 370 RRTVVRRRSEFRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTKLIKVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   ++++E D+LL + E+++ +L+S  +  N +  ++    +
Sbjct: 430 EIQAQYILDLRLRRLTKMSRIELEAERDDLLKKIEELNQILSSEAKLDNVVIADMDSAVK 489

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATL---------------------------------- 510
            +        RRT   + +     T                                   
Sbjct: 490 QWDTP-----RRTILLDENEDGSFTPVASSINKNSEDIAIKAVQSANKITSTQADLAAAA 544

Query: 511 -------------QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI--AL 555
                            +  EP  V +S  G I       ++    H     +       
Sbjct: 545 NAARKTGEADASSVAMQLSDEPCAVALSTSGLIARTSIAVLEHWNSHNNNVFNTPCKTMF 604

Query: 556 HAHTTDRILLLSTDGKAYTLPAGN---------------LLSGRGHGEAIQLLIDLNHNQ 600
              T     L+++ G+       +                              D    +
Sbjct: 605 ATTTRSTCALVTSSGRLVLAHVADLPQLNYEEGKPALLNHGVKAQELLTSTQSTDPVRGE 664

Query: 601 DIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
            +V+A  +D++     L + +  G             T    + + +  ++ +       
Sbjct: 665 RVVSAIAFDASQNATPLAIGTRNGVVKRWNFE--APTTMDSWSIIDLKDDDTVIAAAPAK 722

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW---- 711
             D +  +  +  LL F   Q+    R   G+      +G           + + W    
Sbjct: 723 DNDRLVFISSDSSLLTFDAKQVRPQGRTAGGMAGIRLAEGAKVATFAVVPEKSIEWHYEE 782

Query: 712 ----------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                                 +        +     +     R   G    +       
Sbjct: 783 GENGLFSASGTVVFTVAGDSEALPGTENGSAKITPFDMYPTKGRATGGVRSQRFLKGQDT 842

Query: 750 FLSS 753
            + +
Sbjct: 843 LIHA 846


>gi|281306922|pdb|2WL2|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|281306923|pdb|2WL2|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|315583409|pdb|2Y3P|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|315583410|pdb|2Y3P|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
          Length = 522

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 217/522 (41%), Positives = 309/522 (59%), Gaps = 45/522 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKS
Sbjct: 6   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 66  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 126 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR GRG   +RAR
Sbjct: 186 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRAR 244

Query: 256 WCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++ 
Sbjct: 245 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R+ F ++    R  IL+ L +A  NID II +IR+   P                     
Sbjct: 364 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 423

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                             V    + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 424 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             ++  +L S  +    I  E+  V+E F       +RRT  
Sbjct: 484 IAELLRILGSADRLMEVIREELELVREQFGD-----KRRTEI 520


>gi|169343779|ref|ZP_02864778.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium perfringens C
           str. JGS1495]
 gi|169298339|gb|EDS80429.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium perfringens C
           str. JGS1495]
          Length = 979

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 217/746 (29%), Positives = 383/746 (51%), Gaps = 38/746 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N     + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++    +   
Sbjct: 5   NIEIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAF 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD AA
Sbjct: 65  PDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT GIAVG+
Sbjct: 125 AMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGL 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T+IP HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG ++   ++++ +Y  G 
Sbjct: 185 STNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGG-VLIGEKTLLSAYETGE 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    +  + DIRD
Sbjct: 244 GKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRD 303

Query: 304 ESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES       +    +++D    D +++ ++  +D++     NM  L+    P+ M L  I
Sbjct: 304 ESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALAD-GKPETMGLKTI 362

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           +  ++ H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR           +
Sbjct: 363 ISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENL 422

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           VS+F  T+ Q +AIL L L  L  LE    + E   L  + + +  +L +       I  
Sbjct: 423 VSKFGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKD 482

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++EV E++        RRT   E     K  L++ ++ +  + V +SN G+I+      
Sbjct: 483 ELKEVAEVYGDE-----RRTALIEDESEAKIDLEELIVAE-DVMVTLSNEGFIKKIPLKT 536

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
               +VD + + ++EGD LK  + ++T D + + +  G  Y +   ++   +   +  +L
Sbjct: 537 YNRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVSDKKWKDKGERL 596

Query: 593 LIDLN----HNQDIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              +      ++ I+       +        +++ G        + +    K    +K+ 
Sbjct: 597 EDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK-LMAIKLK 655

Query: 646 SEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           +++ +  V  +        V +   N    + S  ++    R   G++L   K G     
Sbjct: 656 NDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRNILGIQLVPLKSGNQIKS 715

Query: 701 ICFKICEG--LTWIDSAGRSYNRSEN 724
           I F          I    +   ++ +
Sbjct: 716 IRFVDNYEYKEFIIGINKKGNIKTFS 741



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 69/250 (27%), Gaps = 30/250 (12%)

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
             V +       +  +             +    +  ++   I+  S  GK +  PA  L
Sbjct: 717 RFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEKVKVNSFRNIIAFSNKGKVFKFPAY-L 775

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIAN 634
           L          L+     ++ I+     +          +   S +G        E +  
Sbjct: 776 LQNTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGE 835

Query: 635 TRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
                 +   + ++++  V +      V +V +N   + FS   I  M R   GV   S 
Sbjct: 836 FNNQIAYKFKTPKDELINVDINFENATVILVTKNGMGIKFSATAINPMGRVASGVTGISL 895

Query: 693 KDG-GISDVICFKICEGLT--------------------WIDSAGRSYNRSENDLLGWLG 731
           KD   +         EG+                      I  + +      N     L 
Sbjct: 896 KDDNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYEKLILESKQKEKAEVNIEDIKLQ 955

Query: 732 KRGGVGSLVP 741
            R G GS + 
Sbjct: 956 NRAGRGSSLM 965


>gi|283783172|ref|YP_003373926.1| DNA gyrase/topoisomerase IV, A subunit [Gardnerella vaginalis
           409-05]
 gi|283440999|gb|ADB13465.1| DNA gyrase/topoisomerase IV, A subunit [Gardnerella vaginalis
           409-05]
          Length = 887

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 211/844 (25%), Positives = 362/844 (42%), Gaps = 109/844 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M  M L  
Sbjct: 13  DPRKVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+ KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DHAYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   +  +   ++ED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARLAPASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  ++ +P+ +++ L++ + GPD+P+GGII+  R  I E+Y  GRG
Sbjct: 192 TNMATHNLGEVVAAAKYVMKHPDATLDDLMKLVPGPDWPSGGIIIG-RSGIREAYATGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
            F  R+   +E +      I+VTE+P+ V   R++E+I++ + ++++  +    D +   
Sbjct: 251 AFTTRSTTHIENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP+ ++  +F  + ++  F +N   L     P  M L  +L  W++H
Sbjct: 311 NGTRIVIEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVD-GRPHTMGLRELLDVWISH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           RR V+ RRS FR +    R+ ++ GLL+A L+IDE+I +IR+ +        ++  F L 
Sbjct: 370 RRTVVRRRSEFRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTKLIKVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   ++++E D+LL + E+++ +L+S  +  N +  ++    +
Sbjct: 430 EIQAQYILDLRLRRLTKMSRIELEAERDDLLKKIEELNQILSSEAKLDNVVIADMDSAVK 489

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATL---------------------------------- 510
            +        RRT   + +     T                                   
Sbjct: 490 QWDTP-----RRTILLDENEDGSFTPVASSINKNSEDIAIKAVQSANKITSTQADLAAAA 544

Query: 511 -------------QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI--AL 555
                            +  EP  V +S  G I       ++    H     +       
Sbjct: 545 NAARKTGEADASSVAMQLSDEPCAVALSTSGLIARTSIAVLEHWNSHNNNVFNTPCKTMF 604

Query: 556 HAHTTDRILLLSTDGKAYTLPAGN---------------LLSGRGHGEAIQLLIDLNHNQ 600
              T     L+++ G+       +                              D    +
Sbjct: 605 ATTTRSTCALVTSSGRLVLAHVADLPQLNYEEGKPALLNHGVKAQELLTSTQSTDPVRGE 664

Query: 601 DIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
            +V+A  +D++     L + +  G             T    + + +  ++ +       
Sbjct: 665 RVVSAIAFDASQNATPLAIGTRNGVVKRWNFE--APTTMDSWSIIDLKDDDTVIAAAPAK 722

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW---- 711
             D +  +  +  LL F   Q+    R   G+      +G           + + W    
Sbjct: 723 DNDRLVFISSDSSLLTFDAKQVRPQGRTAGGMAGIRLAEGTKVATFAVVPEKSIEWHYEE 782

Query: 712 ----------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                                 +        +     +     R   G    +       
Sbjct: 783 GENGLFSASGTVVFTVAGDSEALPGTENGSAKITPFDMYPTKGRATGGVRSQRFLKGQDT 842

Query: 750 FLSS 753
            + +
Sbjct: 843 LIHA 846


>gi|145594226|ref|YP_001158523.1| DNA topoisomerase IV subunit A [Salinispora tropica CNB-440]
 gi|145303563|gb|ABP54145.1| DNA topoisomerase IV subunit A [Salinispora tropica CNB-440]
          Length = 827

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 217/764 (28%), Positives = 368/764 (48%), Gaps = 44/764 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L   + + YL YA S I  RA+PD RDG KPVHRRI+ +M E G        KS
Sbjct: 20  RVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMYESGHRPDRGHVKS 79

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPH D ++YD+LVRLAQ F    PLI G GNFG+ D D  AA RYTEAR
Sbjct: 80  ARVVGDVMGKYHPHSDVAIYDALVRLAQDFSLNAPLIDGHGNFGSPD-DGPAAARYTEAR 138

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++ A L++  + E+ VD    Y+   ++P V P+ FPNLL NG SGIAVGMAT++  HN
Sbjct: 139 MSREAMLLVGELGEETVDLGPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHN 198

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  AA  LI++P+ +++KL+E++ GPD PTGG+++   + +  +Y  GRG  R+RA+
Sbjct: 199 LGEVVSAARWLINHPDATLDKLMEFVPGPDLPTGGLLLG-LDEVRRAYETGRGVVRMRAK 257

Query: 256 WCV--EEVGRGSWCIVVTEIPYQVQKSRLIEKI-AELIIAKRIPLLEDIRDESAEDV-RI 311
             +   E  RG   I V E+PY +   ++I  +  E+   KR+  + D++D +  +    
Sbjct: 258 VEIGPIEGSRGRQAITVVELPYGIGAEKVIAAVTNEVTKTKRLTGIADVKDLTDRENGTR 317

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++      ++P  L+  ++ L+ +E  F +N  VL     P+ + L  +L+ +LAHR EV
Sbjct: 318 LVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVD-GQPRTLGLKALLEVFLAHRYEV 376

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RRS++R +  + R+ ++ GLL+A L+ID+++ +IR  +  +      + RF L+E Q 
Sbjct: 377 VTRRSAYRKRRREERLHLVDGLLVALLDIDQVVKLIRGSEDAQAAKDGLMRRFGLSEIQA 436

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L + +  ++++E + L  E  ++  LL+  K     ++ E+  V   F+ 
Sbjct: 437 TYILDTPLRRLTRYDRLELEAEQEKLRGEITELSRLLDDPKVLRKVVSTELAAVVRQFAA 496

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                 RRTT  +    +               +P  V++S+ G +    + S +    H
Sbjct: 497 P-----RRTTLVDGDLKEVLAASVPAGPLEVADDPCQVILSSTGLVARTAAESEEAVEGH 551

Query: 545 FKEGDSLKIALHAHTTD----RILLLSTDGKAYTLPA--------GNLLSGRGHGEAIQL 592
            + G     A+ A        ++LL+++ G+A+ +           +       G +   
Sbjct: 552 RRHGRVRHDAVRAVAHSTARGKVLLVTSGGRAFKVDVLPLPVLPDQSGTVSLRGGMSAAE 611

Query: 593 LIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L+ L   + +V         + +  L + + +G   +                + +   +
Sbjct: 612 LVPLAPGETVVGIAPLGAPAEGSPGLALGTRQGMVKVCAPD--WPVRADEFEVISLRDGD 669

Query: 649 KMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISD----VI 701
           ++     +T   + +A V     LL + +  +     RG GV   S            V 
Sbjct: 670 EVVGTTWLTDGAESLAFVTSEASLLRYPVGLVRPQGLRGGGVAGVSLPGDARVVYFGAVR 729

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 G   + ++  +  +           R   G    +   
Sbjct: 730 TDDPAHGEPMVVTSTGATVKVTPFAAYPAKGRATGGVRSQRFLK 773


>gi|326332643|ref|ZP_08198911.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325949644|gb|EGD41716.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 643

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 205/641 (31%), Positives = 335/641 (52%), Gaps = 22/641 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +     EE++    +   +   +L Y+ S I  RA+PD RDG KPV RRI+  M++MG+ 
Sbjct: 9   DLPDDFEEHILDTDIGEEMRSSFLEYSYSVIYSRALPDARDGLKPVQRRILFTMNDMGVR 68

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSA 126
                 K ARIVGEV+GKLHPHGD ++YD+LVR+AQP+  R P+I G GNFG+  G D A
Sbjct: 69  PDRGHVKCARIVGEVMGKLHPHGDGAIYDALVRMAQPWAMRLPMIDGHGNFGSPGGDDPA 128

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEARM   A  +   + ED VDFR  Y+  + EP V P+  PNLL NG +GIAVG
Sbjct: 129 AAMRYTEARMGPAALAMTDDIKEDTVDFRPNYDSREMEPSVLPAAIPNLLVNGATGIAVG 188

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++  HN+ E+  AA  LI +P   ++ L+++I GPD PTGG IV   + I ++Y  G
Sbjct: 189 MATNMAPHNLVEVIAAARHLIKHPGAELDTLMKFIPGPDLPTGGTIV-GLDGIRDAYETG 247

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG F++RA   +E  GR    IV+TE+P+ +   ++IE++  L+ +K+I  + D++D + 
Sbjct: 248 RGSFKIRATTRIETFGR-RKGIVITELPFNIGTEKIIERVKTLVQSKKIQGIADLKDLTD 306

Query: 307 -EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    ++        P+ ++E ++ ++ +E  F +N   L     P+ + L  +L+ +L
Sbjct: 307 RQHGTRLVIEVKNGFVPEAVLEQLYKMTPLEDSFGINNVALVD-GQPRTLGLKELLEVFL 365

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            HR +V+ RRS FR      R+ ++ GLLIA L+IDE+I +IR  +   + K  ++S F 
Sbjct: 366 GHRYDVVRRRSQFRRDKAADRLHLVDGLLIAILDIDEVIQLIRASENAGEAKDRLMSVFD 425

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q + IL++ LR L K  + +++ E D L A  E +DS+L   +     ++ E+ EV
Sbjct: 426 LSQPQAEYILDMALRRLTKFSKIELEKERDELQATIEYLDSILGDDEMLRKVVSDELGEV 485

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F        RRT     +           +  +P   ++S+ G +          + 
Sbjct: 486 AKTFGTP-----RRTVLLASAGTPALEAMSLEVADDPCFAMLSSTGLLARSSDAEPFTTG 540

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--------EAIQLLI 594
                 D +   + A    +I +L++ G+   L   +L +               +  L+
Sbjct: 541 SARANHDVIVSVVPATARGQIGVLTSRGRLVRLGVLDLPAMPPTHGDPNLSGGLPLSALL 600

Query: 595 DLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIAN 634
            L  ++  +      +    + + +  G    V    ++  
Sbjct: 601 SLESDERALALTTLATDGPGIALGTRLGVVKRVNPEVLLNK 641


>gi|75761792|ref|ZP_00741727.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490725|gb|EAO54006.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 448

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 195/450 (43%), Positives = 304/450 (67%), Gaps = 7/450 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 2   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 60  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 120 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 180 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSG-LILGRSGIRRAYET 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 239 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 299 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 358 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELD 452
           L+E Q  AIL++RL+ L  LE  +I+  + 
Sbjct: 418 LSEKQAQAILDMRLQRLTGLEREKIEQNIK 447


>gi|298346916|ref|YP_003719603.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|298236977|gb|ADI68109.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
          Length = 844

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 227/810 (28%), Positives = 371/810 (45%), Gaps = 85/810 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S+    E ++ + +   +E  +L YA S I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 1   MSDSSL---ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS R+VG+V+GKLHPHGD ++YD+LVRLAQPF  R PLI G GNFG++D D 
Sbjct: 58  LTPDKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DG 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+   A  ++  +DED VDF   Y+ + ++P V P++FPNLL NG +GIAV
Sbjct: 117 PAAARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAEFPNLLVNGANGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HNV E   AA+ L+D+P+    +L++Y  GPD P GGIIV   + I E+Y  
Sbjct: 177 GMATNIPPHNVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIV-GLDGIREAYEN 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IV+TE+PYQV   R+ EK+ E + + ++  +   +D S
Sbjct: 236 GRGIFITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLS 295

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++ S++  + ++  F +N   L     P+ + L   L+ +
Sbjct: 296 DRTHGMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVD-GQPRTLGLKAALQVF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR  D     +  +++ F
Sbjct: 355 VDHRVEVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMTVF 414

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q + IL LRLR L K    ++++E D L     +++ +L S ++  + +  ++R+
Sbjct: 415 DLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIAELEQILASTEKLHDVVRSDMRQ 474

Query: 482 VKEIFSKSTDLGRRRTTFCEVS---------------RADKATLQQAMIEKEPITVVISN 526
                S       RRT   E                  A   +     +   P  +++  
Sbjct: 475 TAARLSTP-----RRTVLLEEDGSAVAASKDAALPVLGAMTVSDVPLEVPDVPCRIILGA 529

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            G    L                ++  ++  HT     ++++ G    L   +L  G   
Sbjct: 530 DGRAIRLT--HTGPVTRLEGFNSTIAGSILTHTRGSFGVVTSSGFVVRLDVLSLPPGEKS 587

Query: 587 GEAIQLLID-------------------------------------LNHNQDIVTAFVYD 609
             A                                           L   + +V     D
Sbjct: 588 SLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAPQLSAAARLEDGETVVGILTLD 647

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               + +++++G    +       +T+   + + +   +++        D  + ++  + 
Sbjct: 648 EDETVGMMTARGIVKRMRPD--YPSTQDRFSIINLEGTDQLIYAGACPDDAQIVMISTDA 705

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE---GLTWIDSAG-------- 716
           +LL    +++    R   GV   S K+            E     T    +         
Sbjct: 706 QLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPDELVAATTVATVSAIMNAMPGA 765

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +S  +        +  RG  G  V +   
Sbjct: 766 NQSSIKLTPLDRYPVKGRGAQGVRVQRFLK 795



 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 61/178 (34%), Gaps = 22/178 (12%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
              +       +    +I+L     ++ A       +++++S+         +++    R
Sbjct: 661 VKRMRPDYPSTQDRFSIINLEGTDQLIYAGACPDDAQIVMISTDAQLLRTPANKVRPQGR 720

Query: 637 K--GKTFLKVSSEEKMKLVVKVTGDHVAVVG-------------ENRKLLIF-SIDQIPE 680
              G   + +    ++     V  + VA                 N+  +    +D+ P 
Sbjct: 721 NAGGVAGMSLKEHTQVIAGAIVPDELVAATTVATVSAIMNAMPGANQSSIKLTPLDRYPV 780

Query: 681 MSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             RG +GVR+Q +  G  +  + F   + +  ID+ G+       +L      R G G
Sbjct: 781 KGRGAQGVRVQRFLKGEYALDMAFVGPDPIHAIDAHGQP--VKLPELDER---RDGSG 833


>gi|198283801|ref|YP_002220122.1| DNA topoisomerase IV subunit A [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666998|ref|YP_002426432.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248322|gb|ACH83915.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519211|gb|ACK79797.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 801

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 250/697 (35%), Positives = 379/697 (54%), Gaps = 27/697 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S +  RAIP L DG KPV RRI++AM +MGL       KSAR+VGEVIGK HPHGD SV
Sbjct: 81  MSVVTGRAIPALADGQKPVQRRILYAMRDMGLQRSPQHVKSARVVGEVIGKWHPHGDTSV 140

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQ F  RYP++ GQGNFG++DGDSAAA RYTEA +T ++EL+L  +DE  VDF
Sbjct: 141 YDAMVRMAQHFTLRYPVVDGQGNFGSLDGDSAAAMRYTEANLTPISELLLAEMDEGTVDF 200

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           R  Y+    EPV  P++ P LL NG SGIAVGMAT IP HN++E+ +    L+  P+++ 
Sbjct: 201 RSNYDGTLEEPVTLPARLPFLLMNGASGIAVGMATEIPPHNLRELAQVCAELVLRPDMAD 260

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           +++L+ I GPDFP GG I+ +   I E+Y  GRG  RVRARW VE++ RG W I V ++P
Sbjct: 261 DEILQQIPGPDFPGGGQIISTPGQIREAYLSGRGSIRVRARWEVEKLARGEWRIAVQQLP 320

Query: 275 YQVQKSRLIEKIAELII--------------------AKRIPLLEDIRDES--AEDVRIV 312
             V  ++++ +I  L                         +  ++ +RDES  A  VRIV
Sbjct: 321 PGVSTAQILSEIETLSNPQAKGEGKKKALTPEQQATKNAMLSQMDTVRDESGKAHAVRIV 380

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           + P++R+ DP  LM  +   + +E+   +N+ VL +      MPL  IL++W+ +R   +
Sbjct: 381 IEPRSRNQDPQSLMTYLLARTSLESNQSVNLTVLDLDGKAPCMPLTRILRQWVRYRVTTV 440

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RRS FR+     R+ IL+G L   L+ID +I +IR  D PK  +++ F L+E Q + IL
Sbjct: 441 RRRSQFRLDKALARIHILEGRLRVLLDIDAVIRVIRESDDPKADLMTHFDLSEIQAEDIL 500

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLR L +L   +++ EL +       + +LL    +    IA EI+   + F      
Sbjct: 501 EIRLRQLARLAGIELERELADKQETAAYLSALLQDESRLRALIAEEIQADAKKFGDDRRT 560

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                T              A I  EP+TV++S +GW+R+   H +D + L FKEGD+L 
Sbjct: 561 LLEADTAI---TNKSIQTIAAAITDEPVTVIVSQKGWLRTRSGHGLDTATLGFKEGDALL 617

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            A    + D ++LL   G+AY++    +  GRG G  +   +D      + +        
Sbjct: 618 QAFEVRSVDTLVLLDHSGRAYSIAVAQIPGGRGDGIPVSSQVDFQPGGVLASVACGAGDS 677

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKL 670
             LV  + G  F+     +    R GK FL +  +E+   +++VT        +  + + 
Sbjct: 678 LWLVAGTGGYGFLTTLENMTGRNRAGKAFLTLDPKERPLPLIRVTDLQAEALCLSSDGRG 737

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICE 707
           L+F +  +  + +GKGV+L +         +   + +
Sbjct: 738 LLFPLVDVKNLPKGKGVKLIALGASATLQSLSVYLDD 774


>gi|139439851|ref|ZP_01773216.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC
           25986]
 gi|133774779|gb|EBA38599.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC
           25986]
          Length = 575

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 202/498 (40%), Positives = 300/498 (60%), Gaps = 10/498 (2%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S    +    ++       +++ ++ Y++S I  RA+PD+RDG KPVHRRI++AM+E G+
Sbjct: 59  SAGEDINGGQLQISEFGREMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGI 118

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                 KKSA  VGEVIGK HPHGD +VY+++VRLAQ F  R PLI G GNFGNIDGD A
Sbjct: 119 YPNRPHKKSAWTVGEVIGKYHPHGDSAVYEAMVRLAQWFSMRTPLIDGHGNFGNIDGDGA 178

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+R+ + A  +L+ + +D VD++  Y+E  +EPV  P++FPNLL NG+ GIAVG
Sbjct: 179 AAMRYTESRLAKPAMELLRDLQKDTVDWQPNYDESLAEPVALPARFPNLLVNGSQGIAVG 238

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+I  HN+ E  EA   LIDNP+ ++++L++ + GPDFPTG  I+     I +SY  G
Sbjct: 239 MATNIAPHNLAEAIEATCYLIDNPDATVDELMQIMPGPDFPTGA-IIMGSAGIKQSYETG 297

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   VRA+  VE    G   +V TEIPY V K  L EKIA+L+  KRI  + D+RDES 
Sbjct: 298 RGSITVRAKAHVESTKTGRSRLVFTEIPYMVNKGTLQEKIAQLVNDKRIEGISDMRDESN 357

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    ++    + + P +++ +++  + ++T F  N   L    VP+ + L  +L+ ++ 
Sbjct: 358 QKGIRLVIELKKGVIPQVVLNNLYKYTSLQTTFGANNLALV-NGVPKCLSLREMLQHYID 416

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSL 423
           H+ +V+ RR+ F ++    R  IL+G L+A  +IDE+I+IIR+          ++ RF  
Sbjct: 417 HQVDVVTRRTRFDLKKAQARAHILEGYLMALDHIDEVISIIRSSQTDSEASSRLIERFGF 476

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T  Q  AIL ++LR L  LE  +I+ ELD L       + LL   ++    I  E+RE+ 
Sbjct: 477 TPEQTTAILEMKLRRLTGLERDKIQEELDGLRRAIAYYEDLLAHEEKILGVIKEEMREIS 536

Query: 484 EIFSKSTDLGRRRTTFCE 501
           + F       +RRT   +
Sbjct: 537 KKFGD-----KRRTEISQ 549


>gi|254519461|ref|ZP_05131517.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA]
 gi|226913210|gb|EEH98411.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA]
          Length = 968

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 217/675 (32%), Positives = 364/675 (53%), Gaps = 31/675 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++   + N+  V L  A+ + YL YA+   K+RA+PD+RDG KPVHRRI++   ++    
Sbjct: 6   NDIPRDNNIIRVPLEEAMPDNYLPYAIEVAKDRALPDVRDGLKPVHRRILYGAYQLKAFP 65

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSARIVG+++GK HPHGD SVYD++V +AQ F  R  LI G GN+G++DGD AAA
Sbjct: 66  DRPYYKSARIVGDILGKYHPHGDTSVYDAMVIMAQNFSTRETLIDGHGNWGSMDGDGAAA 125

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+  +A  +L+ +D++ VD    Y++ + EP V PS++PNLL NGT GIAVG+A
Sbjct: 126 MRYTEARLAPIAMEMLRDIDKETVDMVPNYSDSEMEPKVLPSRYPNLLVNGTFGIAVGLA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  LA IDN EI+ ++L+ Y+ GPD PTGGI++  + SI+ +Y  G G
Sbjct: 186 TNIPPHNLGEVTDGVLAYIDNSEITTKELMNYVKGPDLPTGGILI-GQNSILAAYETGEG 244

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDE 304
              +RA+  +E +  G   IV+TE P++  K++L++ I+E+   KR    +  + DIRDE
Sbjct: 245 KVTLRAKTNIERLENGRVGIVITEFPFRRNKAKLLQTISEMTGDKRHAKALESIVDIRDE 304

Query: 305 SAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           S       +    ++ D    D +++ +F  +D++     NM  L+    PQ M L  I+
Sbjct: 305 SDRSGVRAVIELRKAADEEVADKVLKYLFKRTDLQCNLSFNMVALAD-GKPQTMGLKTII 363

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMV 418
           K ++ H++E++ RR+   +   ++R  I++G + A   +DEII  IR     K     ++
Sbjct: 364 KHYVNHQKEIVTRRTIKELSIAEKRFHIVEGFIKAIDVLDEIIKTIRESKSKKDAGVNLI 423

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           S+F  TE Q +AIL L L  L  LE    + E   L    +K+  +L+  K+    +  E
Sbjct: 424 SKFGFTEIQAEAILELMLYRLTGLEIKVFQKEYAELEKTIKKLKKILSEEKELLKVVKNE 483

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           ++EV + +        R+T+  +          + +I  E + + +S  G+I+ +   + 
Sbjct: 484 LKEVSDKYRNP-----RKTSIIKDDNE-AKIDVEELIVVEDVMITLSKDGFIKRIPLKTF 537

Query: 539 DLSALH-----FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE----- 588
           +          ++EGD LK    ++TT+ ILL +  G  Y     N+  G+   +     
Sbjct: 538 NRLNAKAEDIEYREGDELKFLFKSNTTESILLFTNKGNMYQTKGINIPEGKWKEKGEKVD 597

Query: 589 AIQLLIDLNHNQDI--VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
            I   ++L     I   +   +  +  +  ++S+G        +   +  K    +K+  
Sbjct: 598 NIIKTLNLEEENIIFATSVTSFIPSKYIQFITSRGGIKRSSLDKFQTSYTK-LQAIKLKE 656

Query: 647 EEKMKLVVKVTGDHV 661
            E++  V+ +  + V
Sbjct: 657 LEEVIDVILLNQEEV 671



 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/387 (11%), Positives = 104/387 (26%), Gaps = 26/387 (6%)

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
              +   KG+ I      E    + N  K   +         +    I +  ++ +    
Sbjct: 573 KGNMYQTKGINIPEGKWKEKGEKVDNIIKTLNLEEENIIFATSVTSFIPSKYIQFITSRG 632

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             +  S      +  +     L   ++  + I     EVKE  S  T  G   +      
Sbjct: 633 GIKRSSLDKFQTSYTKLQAIKLKELEEVIDVILLNQEEVKEFISFETKEGLSFSLQIPKI 692

Query: 504 RA-------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
                              E   +    +      S+   S            +  + + 
Sbjct: 693 EDLPRNILPTIMFNLSNKDEIIKVEYSETMEFVNFSIGITSKGTIKGFNSIKKNDNLKVS 752

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI-DLNHNQDIVTAF---VYDSTC 612
             +   +L+ +  GK + +PA  L         +  ++ ++  ++ ++  F    ++   
Sbjct: 753 TDSLSNVLMFTNKGKVFKIPAFLLSGVSKGELPLDKIVDNIEKDEKVIKVFSLKTFEENK 812

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV--AVVGENRKL 670
            +   + +G       +E   N     T+      +++  V       V   ++ +    
Sbjct: 813 FIYFFTRRGMIKKTALTEFDGNYSTQITYKFKYDNDELISVELYDDCQVEMLIITKKAMG 872

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG------------LTWIDSAGR 717
           + FS + +  M +   GV   S K+            +                   +  
Sbjct: 873 IKFSSENVNTMGKVASGVTGISLKENDEVIYGSLIGSQSRDNTNEIALTSTDKITLISKN 932

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
              +        L  R G GS +    
Sbjct: 933 KEKKEVELEDIKLQNRAGKGSSIMTIS 959


>gi|219683436|ref|YP_002469819.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219621086|gb|ACL29243.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis AD011]
          Length = 982

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 218/844 (25%), Positives = 352/844 (41%), Gaps = 104/844 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               VEE++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M +M L  
Sbjct: 12  DPRQVEEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLP 71

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 72  TRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 130

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V PS  PNLL NG SGIAVGMA
Sbjct: 131 SRYTEARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMA 190

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  ++ +P+ +++ L++Y+ GPD+P GGII+  R+ I ++Y  GRG
Sbjct: 191 TNMATHNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIG-RQGIRDAYETGRG 249

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               R+   VE +      IVVT++PY V   R++E+I+E +   ++  +    D +   
Sbjct: 250 VVTTRSATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRH 309

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP  ++  +F  + ++  F +N   L     P  + L  +L  W+ H
Sbjct: 310 NGTRIVIELKTGFDPAAVLAQLFKHTPLQENFAINNVALV-NGRPHTLGLRSLLDVWIEH 368

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           RR V+ RRS FR Q    R+ +++GLL+A ++IDE+I +IR+ D     K  ++SRFSL 
Sbjct: 369 RRGVIRRRSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSRFSLD 428

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q   IL+LRLR L K+   +++SE D L +   +++ +L S       +  E+ +   
Sbjct: 429 DIQAQYILDLRLRRLTKMSRIELESERDELQSSITELERILGSAALLDGVVIDEMDKAVA 488

Query: 485 IFSKSTDL-------GRRRTTFCEVSRADK----------------------------AT 509
            +               R                                         T
Sbjct: 489 TYGTPRRTVLLDEGDDGRLVPVVAHGDDMPSDAALDAARHAENVLDAADAVAAARKAGET 548

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHS------VDLSALHFKEGDSLKIALHAHTTDRI 563
            +   IE EP  + +S  G I  +   +              +  D +   + A T    
Sbjct: 549 AEALRIEDEPCVIALSASGLIARMSIDALTIWAKRGAHTEKREPDDVIVSLMPARTRADY 608

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQL-------------LIDLNHNQDIVTAFVYDS 610
            L+++ G+        L +    G                    D    + ++       
Sbjct: 609 ALVTSAGRMVLAHVVELPNLEVTGHLSLTGGIEATELLTSTESTDPVPGERVIATLALRD 668

Query: 611 T----------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           T            + + +  G             T    + + +   +++ +      D 
Sbjct: 669 TVGQDDTAAQLPPVGLGTRNGIVKRWNRE--SPTTMDSWSIIDLKDGDELLVAADAHDDD 726

Query: 661 -VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF--------------- 703
               V  +  LL +    +    R   G+      DG                       
Sbjct: 727 RFVFVSSDSSLLTYEARNVRPQGRTAAGMAGIHLADGCTVLSCAVVAHADVEWHDAEHDD 786

Query: 704 -----KICEGLTWIDS---------AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                    G   +                 +     L     R   G    +       
Sbjct: 787 AGNLLSPASGAVVLTVAGDVDALPGTENGAAKVTPLELYPTKGRATGGVRSQRFLKGQNT 846

Query: 750 FLSS 753
            + +
Sbjct: 847 LIRA 850


>gi|183601381|ref|ZP_02962751.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241191120|ref|YP_002968514.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196526|ref|YP_002970081.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218987|gb|EDT89628.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249512|gb|ACS46452.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251080|gb|ACS48019.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794109|gb|ADG33644.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 891

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 218/844 (25%), Positives = 352/844 (41%), Gaps = 104/844 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               VEE++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M +M L  
Sbjct: 12  DPRQVEEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLP 71

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 72  TRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 130

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V PS  PNLL NG SGIAVGMA
Sbjct: 131 SRYTEARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMA 190

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  ++ +P+ +++ L++Y+ GPD+P GGII+  R+ I ++Y  GRG
Sbjct: 191 TNMATHNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIG-RQGIRDAYETGRG 249

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               R+   VE +      IVVT++PY V   R++E+I+E +   ++  +    D +   
Sbjct: 250 VVTTRSATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRH 309

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP  ++  +F  + ++  F +N   L     P  + L  +L  W+ H
Sbjct: 310 NGTRIVIELKTGFDPAAVLAQLFKHTPLQENFAINNVALV-NGRPHTLGLRSLLDVWIEH 368

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           RR V+ RRS FR Q    R+ +++GLL+A ++IDE+I +IR+ D     K  ++SRFSL 
Sbjct: 369 RRGVIRRRSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSRFSLD 428

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q   IL+LRLR L K+   +++SE D L +   +++ +L S       +  E+ +   
Sbjct: 429 DIQAQYILDLRLRRLTKMSRIELESERDELQSSITELERILGSAALLDGVVIDEMDKAVA 488

Query: 485 IFSKSTDL-------GRRRTTFCEVSRADK----------------------------AT 509
            +               R                                         T
Sbjct: 489 TYGTPRRTVLLDEGDDGRLVPVVAHGDDMPSDAALDAARHAENVLDAADAVAAARKAGET 548

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHS------VDLSALHFKEGDSLKIALHAHTTDRI 563
            +   IE EP  + +S  G I  +   +              +  D +   + A T    
Sbjct: 549 AEALRIEDEPCVIALSASGLIARMSIDALTIWAKRGAHTEKREPDDVIVSLMPARTRADY 608

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQL-------------LIDLNHNQDIVTAFVYDS 610
            L+++ G+        L +    G                    D    + ++       
Sbjct: 609 ALVTSAGRMVLAHVVELPNLEVTGHLSLTGGIEATELLTSTESTDPVPGERVIATLALRD 668

Query: 611 T----------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           T            + + +  G             T    + + +   +++ +      D 
Sbjct: 669 TVGQDDTAAQLPPVGLGTRNGIVKRWNRE--SPTTMDSWSIIDLKDGDELLVAADAHDDD 726

Query: 661 -VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF--------------- 703
               V  +  LL +    +    R   G+      DG                       
Sbjct: 727 RFVFVSSDSSLLTYEARNVRPQGRTAAGMAGIHLADGCTVLSCAVVAHADVEWHDAEHDD 786

Query: 704 -----KICEGLTWIDS---------AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                    G   +                 +     L     R   G    +       
Sbjct: 787 AGNLLSPASGAVVLTVAGDVDALPGTENGAAKVTPLELYPTKGRATGGVRSQRFLKGQNT 846

Query: 750 FLSS 753
            + +
Sbjct: 847 LIRA 850


>gi|54020319|ref|YP_115549.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae 232]
 gi|53987492|gb|AAV27693.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae 232]
          Length = 846

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 201/745 (26%), Positives = 361/745 (48%), Gaps = 27/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++V    L   L E+++ Y+   I++RAIPD+RDG KPV RRI+++M ++GL     +KK
Sbjct: 6   DSVINSRLEKILAEKFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSKNYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD S+YD+LVRLAQ +    PL+   GN G+ID D  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +++E +L+ + ++ V F   +++ + EP + P+ FPNLL NG  GIA G AT IP H
Sbjct: 126 RLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +I NP I+IE++   I+GPDFPTGG IV  +  I ++++ G+G  ++ +
Sbjct: 186 NLGEVIDATILMIKNPGITIEEISTIILGPDFPTGG-IVYGKSGIFDAFKTGKGKIKISS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            + + E   G   I +T IP+ + KS LIE+I ++    +I  ++++ D+S ++   +L 
Sbjct: 245 DYKIFE-KNGQNVIEITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVSILI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +PDL++  +   + ++  +  N   +     P+++ +  ++  +L H R++   
Sbjct: 304 ELEQDGNPDLIINYLLQKTHLQIHYSYNSVAICD-NSPKLLSIKEMIFYYLEHLRKIKLA 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----PVMVSRFSLTENQVDA 430
             +F +    +R+EI+ G L      DE+I +IR  D  K      ++  F+ ++ Q +A
Sbjct: 363 EFNFELYKNKKRLEIITGFLKVADITDEVIKVIRASDNSKVGVVSDLIKFFNFSQTQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I ++RL  L K+E+     E  NL     +   L+ +  +    +   + + K+   K  
Sbjct: 423 IASMRLYRLSKIEQQIYLEESKNLEKNIARFKKLIENKDEFDKNLINMLTDFKKHHGKPR 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                 +        D+    +         +  S       +K+   D           
Sbjct: 483 KTKIIDSDIKIKINKDELVKDEFFY----FWITKSGLYKKLDIKNSLPDEIEKTQLPNGD 538

Query: 551 LK-IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL--NHNQDIVTAF- 606
                   +   + + L+  G+   L    +           L I L   +NQ I++ F 
Sbjct: 539 FFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFF 598

Query: 607 --VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLVVKVTG-DHVA 662
              ++S+  L+ +S    A  +   +++   +K      +    +++  V       ++ 
Sbjct: 599 ADSFESSQFLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRFKEGDELISVFLEEKLKNIV 658

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDSAGRSYN 720
           ++    + L  SI +IP  +R   G+++    K+  IS     +  E L  ID   +   
Sbjct: 659 LITTQNRALKMSISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSESLAVIDFNSQFEK 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFP 745
            +  +L       G    L PK F 
Sbjct: 719 INTENLFF-----GNK-ILTPKNFK 737


>gi|168186942|ref|ZP_02621577.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
 gi|169295241|gb|EDS77374.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
          Length = 970

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 221/732 (30%), Positives = 370/732 (50%), Gaps = 48/732 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N   + N+   S+   + + YL YA+   KERA+PD+RDG KPVHRRI++   ++   
Sbjct: 5   NVNIPKDNNIIKTSISEVMPDNYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKAT 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGDSAA
Sbjct: 65  PDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSIDGDSAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T  A  +L+ +D+D VD  + Y++ + EP V P++FPNLL NG  GIAVG+
Sbjct: 125 AMRYTEARLTNAATEMLKDIDKDVVDMVNNYSDTELEPKVLPARFPNLLVNGAFGIAVGL 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN++E  +  +A I+N  IS ++L+ YI GPD PTGGI++   ++++ +Y  G 
Sbjct: 185 ATNIPPHNLKETIDGCIAYINNNNISTKELMNYIKGPDLPTGGILI-GEKALLSAYEKGE 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E++    + IV+ E PY+  KS++++ I+E+   K+    +  + DIRD
Sbjct: 244 GRVTLRAKTNIEKLENDRYGIVIKEFPYRKNKSKMLQSISEMTADKKHSKALDSIYDIRD 303

Query: 304 ESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES  +    +    +S D    + +++ +F  ++++        V      P+ + L  I
Sbjct: 304 ESDRNGIRAVIELKKSADMEEAERVLKYLFKKTELQCNLSF-NMVAIAEGKPKTLGLKSI 362

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           LK ++ H+++V+ RR+   ++   +R  I++G + A   +DEI+  IR        +  +
Sbjct: 363 LKYYVEHQKDVITRRTKKELEIAKKRFHIVEGFIKAIDIMDEILKTIRASKSKKDSEENL 422

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           V +F  +  Q +AI+ L L  L  LE    + E   L      +  +LNS K+ +  I  
Sbjct: 423 VGKFGFSREQAEAIVELMLYKLTGLEIKVFEKEYRELQRRINALTKILNSEKELFKVIKK 482

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ EVKE +        RRT              + +I  E + + +SN G+I+      
Sbjct: 483 ELNEVKENYGDE-----RRTNII-HDDEKAKIDIEDIIVDENVVITVSNDGYIKRVSEKY 536

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
            K  +  +  + ++EGD  K  L  +T D +++ +  G  Y L   N+   +   +  +L
Sbjct: 537 YKRINPKIEDIEYREGDFNKFILEGNTKDNLIMFTDAGNLYQLRIVNIPEMKWKEKGKRL 596

Query: 593 LIDLN----HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              +       +  +  +V D           +++G        +   N  K    LK+ 
Sbjct: 597 DELIKTLDLEKEKFIEFYVIDELNSNKNFFFFTNRGMIKKTSLDKFKTNYSK-LLALKLK 655

Query: 646 SEEKMKLVVK----VTGDHVAVVGENRKLLIFSIDQIP-------EMSRGKGVRLQSYKD 694
             EK+  V          ++ +  +N   L F++ +          M    G ++ +   
Sbjct: 656 ENEKLIDVKLNYNNRKEQYIKIQSKNG--LEFTVSEPRIENNDRNVM----GNQIFNLSS 709

Query: 695 GGISDVICFKIC 706
                 IC+   
Sbjct: 710 QDEVKNICYTDE 721



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 100/324 (30%), Gaps = 22/324 (6%)

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            ++K    + K+    LLA K K +  L   K  +N    +  +++        +   R 
Sbjct: 633 MIKKTSLDKFKTNYSKLLALKLKENEKLIDVKLNYNNRKEQYIKIQSKNGLEFTVSEPRI 692

Query: 498 TFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
              + +          +  E + I           ++  +S     +  K         +
Sbjct: 693 ENNDRNVMGNQIFNLSSQDEVKNICYTDEFNIKNFAVNINSKGKIKISKKINYKNFKGCY 752

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID--LNHNQDIVTAFV---YDST 611
           A++   I++    G  +  PA  + +       +  LID    + +DI++ F    +D  
Sbjct: 753 ANSLSNIVIFGNKGNVFLFPAYLIENIDNGLIKLSNLIDEFNENEEDIISIFSISEFDDK 812

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENR 668
                +S +G       SE        K +   + ++K+  V+         + ++ +  
Sbjct: 813 SSFYFISEEGYVKKTMLSEFNGMYSYTKGYKLKNKDDKLINVLLNDNTFKTDILLITKKD 872

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRSYNRSENDL 726
             + F  + I  M +   GV   S  +        F    + +  I   G   N+ E   
Sbjct: 873 MRIRFESNSINPMGKIASGVTGISLNEDDKVIFGEFIYQEDNIDKIKICGEIKNKLEVSY 932

Query: 727 LGWL-----------GKRGGVGSL 739
                            R G G  
Sbjct: 933 DDNSEEVVILKDINNQNRAGKGKK 956


>gi|71893388|ref|YP_278834.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae J]
 gi|71851515|gb|AAZ44123.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae J]
          Length = 846

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 202/745 (27%), Positives = 362/745 (48%), Gaps = 27/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++V    L   L E+++ Y+   I++RAIPD++DG KPV RRI+++M ++GL     +KK
Sbjct: 6   DSVINSQLEKILAEKFIRYSKYVIQQRAIPDVKDGLKPVQRRILYSMWQLGLKNSKNYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD S+YD+LVRLAQ +    PL+   GN G+ID D  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +++E +L+ + ++ V F   +++ + EP + P+ FPNLL NG  GIA G AT IP H
Sbjct: 126 RLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +I NP I+IE++   I+GPDFPTGG IV  +  I ++++ G+G  ++ +
Sbjct: 186 NLGEVIDAAILMIKNPGITIEEISTIILGPDFPTGG-IVYGKSGIFDAFKTGKGKIKISS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            + + E   G   I +T IP+ + KS LIE+I ++    +I  ++++ D+S ++   +L 
Sbjct: 245 DYKIFE-KNGQNVIEITSIPFGISKSSLIEEIDDIRFDVKIYGIKNVIDQSDQNGVSILI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +PDL++  +   + ++  +  N   +     P+++ +  ++  +L H R++   
Sbjct: 304 ELEQDGNPDLIINYLLQKTHLQIHYSYNSVAICD-NSPKLLSIKEMIFYYLEHLRKIKLA 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----PVMVSRFSLTENQVDA 430
             +F +    +R+EI+ G L      DE+I +IR  D  K      ++  F+ ++ Q +A
Sbjct: 363 EFNFELYKNKKRLEIITGFLKVADITDEVIKVIRASDNSKVGVVNDLIKFFNFSQTQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I ++RL  L K+E+     E  NL     K   L+ +  +    +   + + K+   K  
Sbjct: 423 IASMRLYRLSKIEQQIYLEESKNLEKNITKFKKLIENKDEFDKNLINMLTDFKKHHGKPR 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                 +        D+    +         +  S       +K+   D           
Sbjct: 483 KTRIIDSDIKIKINKDELVKDEFFY----FWITKSGLYKKLDIKNSLPDEIEKTQLPNGD 538

Query: 551 LK-IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL--NHNQDIVTAF- 606
                   +   + + L+  G+   L    +           L I L   +NQ I++ F 
Sbjct: 539 FFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFF 598

Query: 607 --VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLVVKVTG-DHVA 662
              ++S+  L+ +S    A  +   +++   +K      +    +++  V       ++ 
Sbjct: 599 ADSFESSQFLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRFKEGDELISVFLEEKLKNIV 658

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDSAGRSYN 720
           ++    + L  SI +IP  +R   G+++    K+  IS     +  E L  ID   +   
Sbjct: 659 LITTQNRALKMSISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSESLAVIDFNSQFEK 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFP 745
            +  +L       G    L PK F 
Sbjct: 719 INTENLFF-----GNK-ILTPKNFK 737


>gi|291459210|ref|ZP_06598600.1| DNA gyrase subunit A [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418464|gb|EFE92183.1| DNA gyrase subunit A [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 747

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 215/765 (28%), Positives = 360/765 (47%), Gaps = 57/765 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ YL Y++S I  RA+PD+RDG KPV RR+++ M+E+ +      
Sbjct: 1   MAEKILTTEFSEEMQKSYLDYSMSVITSRAVPDIRDGLKPVQRRVLYDMNELHVHSDRPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARI G+ +GK HPHGD S+Y++LV LAQ F +  PL+ GQGNFG+I+GDSAAA RYT
Sbjct: 61  LKSARICGDTMGKYHPHGDASIYETLVVLAQDFKRMQPLVQGQGNFGSIEGDSAAAPRYT 120

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ +  +  +L+ + E  V F+  Y+E+  EP V P++ P  L NG+ GIAVGM TS 
Sbjct: 121 EARLQRFTDEVMLRDL-ETTVPFQPNYDEKLREPEVLPARIPYFLLNGSEGIAVGMTTSA 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           PSHN+ EI +  LA + NP +   ++L Y+ GPDFPTGGII  +R  +++ YR G G  +
Sbjct: 180 PSHNLSEIIDLVLAYLKNPAMETREMLHYLPGPDFPTGGIIA-NRSELLDIYRTGSGKLK 238

Query: 252 VRAR--WCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +  +   +       ++VTEIPY +      + ++  A L+  K++P + DI ++S 
Sbjct: 239 LRGKLVFEKRKGRSDKDKLIVTEIPYTMIGQGIMKFMQDTAALVEEKKLPEITDISNQSD 298

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   ++       D D +   ++  + +E  F +NM  +     P+V+ L GIL+E+L+
Sbjct: 299 KDGIRIVLELKSGADIDRITNILYKKTKLEDSFGVNMLAIVK-GRPEVLSLRGILREYLS 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------- 415
            + +++ ++    ++    R EI +GL+ A   ID IIA++R+  K +            
Sbjct: 358 FQYQLIEQKYQKLLEKELLRKEIQEGLIRAVDCIDAIIALLRSSQKQEEAKKALMGEGSE 417

Query: 416 ------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                         +  F  TE Q  AIL+++L  L  LE   ++ E    L   ++   
Sbjct: 418 GIRLRERDREYREQIRDFHFTERQAQAILDMKLSKLIGLELLALQREYRESLKSIKEYRG 477

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L+S ++    +A E+ E++E +        RRT   +   A            E + VV
Sbjct: 478 ILSSRERANELLAQELSEIRERY-----FVPRRTLLEDGKDAVY-----DESAVEEMQVV 527

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                +                      +  +    TDRILL +  G+ + +   ++  G
Sbjct: 528 YVQDRFGYVKLLDETVYQRNQEALLSESRFLIPCKNTDRILLFTDQGRLHQIRLLDVPLG 587

Query: 584 RGHGE--AIQLLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKG 638
           +   +   I  +   + +++ +      +     +LL VS  G A  V   E     R  
Sbjct: 588 KFRDKGVPIDNISKYSASEEEILFAAAKAELSGKELLFVSQMGLAKRVPSEEFDTANRL- 646

Query: 639 KTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            +  K+   +++  V+ V G   + + +  E    L F I ++P   +  KGV       
Sbjct: 647 VSATKLQEGDRVASVLSVPGESEEDLVLQSEASYFLRFPIKELPLQKKNAKGVLSMKLGR 706

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           G                  S  +               RGG G+ 
Sbjct: 707 GDRIRSALLIAPGSERL--STEKG---ELMLSRLKQSHRGGRGAK 746


>gi|33860565|ref|NP_892126.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633507|emb|CAE18464.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 813

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 201/681 (29%), Positives = 349/681 (51%), Gaps = 18/681 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E   ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MTKEKFTSISLQEEMQRSYLEYAMSVIIGRALPDARDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VY++LVRL Q F  +YP + G GNFG++D D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYEALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A    LQ +  + V + + ++    EP + P++ P LL NG+SGIAVGMAT+
Sbjct: 121 TETRLAPIAHECFLQEIGSETVSYSNNFDGSQQEPDILPAQLPFLLLNGSSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  +ALI++ EIS  +L + I+GPDFPTGG ++ +  ++ E Y  GRG  
Sbjct: 181 IPPHNLGEIVDGLIALINDKEISDLRLSKIILGPDFPTGGELICN-SAMNEVYLQGRGSV 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            VR     EE+  G        ++++E+PYQ+ K+  IEK+AEL+   +I  + DIRDES
Sbjct: 240 TVRGVIKNEEINLGKGRHKKNALIISELPYQISKAGWIEKLAELVNLGKIDGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    +  + ++++ ++F  + +++ F      L     P  + L   L  +L
Sbjct: 300 DRDGMRVVIELKKDSNSEIVVSNLFKKTALQSNFGAIFLALVD-GKPIQLTLRKYLNYFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--- 422
             R E + +R+ + ++    + EIL+G  IA  NI +II +I+N +              
Sbjct: 359 EFREETIRKRTKYFLRIASEKFEILEGFSIATKNIKDIIEVIQNSENATEAKSILIVKLS 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L++ L+ L  LE  QI+ ++  LL +K+ +++LLN+ +   + +  E++ +
Sbjct: 419 LSEKQADAVLSMPLKKLTTLERKQIEIDMKELLEKKKYLNNLLNNRRLLLDTLIEELKSL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K+ F+        +    E             +  +   + + NR + + +  ++     
Sbjct: 479 KKKFNVKRKTKILKDINQEKEIDTINNQILEDLINKETKISVDNRFYFKKIIYNNYKKIL 538

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D         +  K       + +I+ +++ GK   +               ++L +++ 
Sbjct: 539 DHENKFIDNKNVQKFICRIDKSLKIIGITSSGKIIQID-WKSNITSEFKMDKKVLGNIDP 597

Query: 599 NQDI-VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            + I            L ++SS G    V   E +  + +  +  K+ +   +     + 
Sbjct: 598 KEIINFHYLDSKLKNYLCILSSDGRFKKVLFDEDMIKSNRIFSITKLKNSTSIIDSFILN 657

Query: 658 G-DHVAVVGENRKLLIFSIDQ 677
               + ++    +L  F +  
Sbjct: 658 KQQQLVILTSIGRLFKFDLSD 678


>gi|153823602|ref|ZP_01976269.1| DNA gyrase, subunit A [Vibrio cholerae B33]
 gi|126518881|gb|EAZ76104.1| DNA gyrase, subunit A [Vibrio cholerae B33]
          Length = 447

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 187/410 (45%), Positives = 277/410 (67%), Gaps = 6/410 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P  
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAE 404


>gi|114775359|ref|ZP_01450927.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
 gi|114553470|gb|EAU55851.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
          Length = 1441

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 267/775 (34%), Positives = 438/775 (56%), Gaps = 40/775 (5%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
              D ++        N           E Y +Y L  + +RAIPD+RDG KPVHRRI++AM
Sbjct: 666  AEDAVACFKPYDSGNNTIAPFETVFRELYRSYGLKVVGDRAIPDVRDGMKPVHRRILYAM 725

Query: 62   SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
              + L      KKSAR+VG+VIGK HPHGD +VY ++VR+AQP+V RYPLI GQGNFG+I
Sbjct: 726  EMLKLRSNTKTKKSARVVGDVIGKYHPHGDSAVYGAMVRMAQPWVMRYPLIDGQGNFGSI 785

Query: 122  DGDSAAAYRYTEARMTQVAELILQ-GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGDSAAA RYTEARMT +AE IL   + +    ++  Y+++D EP+V P+ FP ++ N +
Sbjct: 786  DGDSAAAMRYTEARMTPIAEAILSGDLKDGITMYQPNYDDQDKEPMVLPAPFPLVMMNSS 845

Query: 181  SG-IAVGMATSIPSHNVQEICEAALALIDNP--------EISIEKLLEYIIGPDFPTGGI 231
            +G  AVG  T IPSHN+ E+  A +AL                  + ++I  PDFP GGI
Sbjct: 846  TGNPAVGFKTEIPSHNLTELLGACIALAKKRGRTGAMESPTDFRDVRKHITAPDFPGGGI 905

Query: 232  IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI----- 286
            I  + E +   Y  G G   +R++W VE + +G W IVVTEIPY ++KS L+ ++     
Sbjct: 906  IANTHEELEAMYAKGYGKMLLRSKWHVETLPKGLWQIVVTEIPYGIEKSPLLIEMGARIS 965

Query: 287  -AELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
               +  ++++P+++D+RDES+  + +RIVLFPK+R+LDP+ +M  +F  ++++       
Sbjct: 966  DKTIAESRQLPMIDDLRDESSAEDGIRIVLFPKSRNLDPEQIMLHLFSATNLQVTIQYAT 1025

Query: 344  NVLSMG---------RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
              L            R+P + PLD +++ +L +R+E++  R+  R+  I  R+ IL GLL
Sbjct: 1026 YALEKWHDTPNGERYRLPSLFPLDKMIRSFLDYRQELVMSRAKVRLAEITARLHILDGLL 1085

Query: 395  IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
            +AY NI EI+ II + D+P+P+++ ++SLTE Q DAIL +RL  LRKLE+ +++ E D L
Sbjct: 1086 LAYPNIREIVEIILDNDEPRPIIMEKYSLTEIQTDAILAIRLSQLRKLEQMKLQGEHDRL 1145

Query: 455  LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
              E   +  +L+    +W  I  E+R+  + F        RRT     +   +   ++ +
Sbjct: 1146 SEEAAGLHQVLDDDAHRWKHITGELRDALKKFGDE-----RRTIVDPDAPKSRPMSREQI 1200

Query: 515  IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            + +EP+T ++S +GW++ ++  S+D+S++ F+E D L  +   HTTD+++L+   G+A++
Sbjct: 1201 VSREPVTAILSKQGWLKGMRGSSIDVSSVRFRESDKLLDSAAGHTTDQLILIGRTGRAFS 1260

Query: 575  LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
            + A +L SGRG+GE +      + N+      +     + LV ++ G+AF    S++++ 
Sbjct: 1261 MLAADLPSGRGNGEPVSKHFVFSINEAPTRMVMVKPDAEYLVATTAGHAFRAMGSDMVSA 1320

Query: 635  TRKGKTFLKVSSEEKMKLVVKVTGDHV--AVVGENRKLLIFSIDQIPEMSRGKGVRLQSY 692
             +KGK F+   +  ++  + ++   H   A +    ++ +   D+ P + +GKG+   + 
Sbjct: 1321 NKKGKAFINFPASSRLLCIREIEAAHDAFAFIDSYGRMAVILKDEFPLLGKGKGLTAVAM 1380

Query: 693  KDG--GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            K G  G+ D     + EG+        +   +E     +L  R       PK  P
Sbjct: 1381 KKGSKGLRDAAPITLKEGIRVGTKKRATTITTEEIEAEYLVPRA----KAPKSLP 1431


>gi|118442946|ref|YP_878398.1| DNA topoisomerase IV subunit A [Clostridium novyi NT]
 gi|118133402|gb|ABK60446.1| DNA gyrase, A subunit [Clostridium novyi NT]
          Length = 970

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 223/747 (29%), Positives = 381/747 (51%), Gaps = 48/747 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N   + N+   S+   + + YL YA+   KERA+PD+RDG KPVHRRI++   ++   
Sbjct: 5   NINIPKDNNIIKASISEVMPDNYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKAT 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGDSAA
Sbjct: 65  PDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSIDGDSAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T  A  +L+ +D++ VD  + Y++ + EP V P++FPNLL NG  GIAVG+
Sbjct: 125 AMRYTEARLTNAAMEMLKDIDKEVVDMVNNYSDTELEPKVLPARFPNLLVNGAFGIAVGL 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN++E  +  +A IDN +IS ++L+ YI GPD PTGGI++   ++++ +Y  G 
Sbjct: 185 ATNIPPHNLKETIDGCIAYIDNNDISTKELMNYIKGPDLPTGGILI-GEKALLSAYEKGE 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E++    + IV+TE PY+  KS++++ I+E+   K+    +  + DIRD
Sbjct: 244 GRVTLRAKTNIEKLENDRYGIVITEFPYRKNKSKMLQTISEMTADKKHSKALDAISDIRD 303

Query: 304 ESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES  +    +    +S +    + +++ +F  ++++     NM  ++    P+ + L  I
Sbjct: 304 ESDRNGIRAVIELKKSANIEEAERVLKYLFKKTELQCNLSFNMVAIAD-GKPKTLGLKAI 362

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           LK ++ H+++V+ RR+   ++  ++R  I++G + A   +DEI+  IR        +  +
Sbjct: 363 LKYYVEHQKDVVIRRTKKELEIAEKRFHIVEGFIKAIDIMDEILKTIRASKSKKDSEENL 422

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           V++F  +  Q +AI+ L L  L  LE    + E   L      +  +LNS K+ +  I  
Sbjct: 423 VNKFGFSREQAEAIVELMLYKLTGLEIKVFEKEYKELQRRINALTKILNSEKELFKVIKK 482

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ EVKE +        RRT              + +I  E + + ISN G+I+      
Sbjct: 483 ELNEVKENYGDE-----RRTNII-HDDEKAKIDIEELILDEDVIITISNEGYIKRVSEKY 536

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
            K  +  +  + ++EGD  K  L  +T   +++ + +G  Y L   N+   +   +  +L
Sbjct: 537 YKRINPKVEDIEYREGDFNKAILEGNTKYSLIIFTDEGNLYQLRIVNIAEMKWKEKGERL 596

Query: 593 LIDLN----HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              +       + ++  +V +        +  S +G        +   N  K    LK+ 
Sbjct: 597 DNLIKTLDLEKEKLINFYVIEELNSHKNFIFFSDRGMMKKSSLDKFKTNYSK-LLALKLK 655

Query: 646 SEEKMKLVVKVTGD----HVAVVGENRKLLIFSIDQIP-------EMSRGKGVRLQSYKD 694
             EK+  V     +    ++ V  +N   L F++ +          M    G +L +   
Sbjct: 656 ENEKLINVKLADNNRKEQYIKVQTKNG--LKFTVGEPRLENSDRNVM----GNQLFNLSA 709

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNR 721
                 I +     +        +  +
Sbjct: 710 EDKVKEISYTDEFEIKNFAVNINNKGK 736



 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 67/483 (13%), Positives = 151/483 (31%), Gaps = 28/483 (5%)

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           ++I+K    +                E  +I +       D  + + +   +  +  ++ 
Sbjct: 478 KVIKKELNEVKENYGDERRTNIIHDDEKAKIDIEELILDEDVIITISNEGYIKRVSEKYY 537

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             +N        +    +  + E       ++F       Q     +  +K         
Sbjct: 538 KRINPKVEDIEYREGDFNKAILEGNTKYSLIIFTDEGNLYQLRIVNIAEMKWKEKGERLD 597

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           + I  +   ++K     V     +        +  +  ++K    + K+    LLA K K
Sbjct: 598 NLIKTLDLEKEKLINFYVIEELNSHKNFIFFSDRGM--MKKSSLDKFKTNYSKLLALKLK 655

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
            +  L + K   N    +  +V+        +G  R    + +            E +  
Sbjct: 656 ENEKLINVKLADNNRKEQYIKVQTKNGLKFTVGEPRLENSDRNVMGNQLFN-LSAEDKVK 714

Query: 521 TVVISNRGWIRSL--KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            +  ++   I++     ++     +  K         +A++   I++    G  + LPA 
Sbjct: 715 EISYTDEFEIKNFAVNINNKGKIKVSKKVNYKNFKGCYANSLSNIIIFGDKGSVFLLPAY 774

Query: 579 NLLSGRGHGEAIQLLID--LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            + +   +G  +  LID    + + IV  F    ++       +S  G       +E   
Sbjct: 775 LIENIDNNGVKLSNLIDEFNENEESIVNIFAITEFNDEESFYFISENGYVKKTMLNEFQG 834

Query: 634 NTRKGKTFLKVSS-EEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           N    K + K+   ++K+  V+K        + ++ +    + F  D I  M +   GV 
Sbjct: 835 NYSYTKGY-KLKDKDDKLINVLKKDNKLEKDILLITKKDMRIRFDSDSINPMGKIASGVT 893

Query: 689 LQSYKDGGISDVICFK-ICEGLTWIDSAGRSYNRS----ENDLLGWL-------GKRGGV 736
             S  +        F  + +    I   G + N+     E+D    +         R G 
Sbjct: 894 GISLSEDDKVIFGEFIYLEDNDDKIKVYGETKNKLEVMYEDDSEEVVILKGINNQNRAGK 953

Query: 737 GSL 739
           G  
Sbjct: 954 GKK 956


>gi|72080375|ref|YP_287433.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae 7448]
 gi|71913499|gb|AAZ53410.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 846

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 201/745 (26%), Positives = 361/745 (48%), Gaps = 27/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++V    L   L E+++ Y+   I++RAIPD+RDG KPV RRI+++M ++GL     +KK
Sbjct: 6   DSVINSRLEKILAEKFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSKNYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD S+YD+LVRLAQ +    PL+   GN G+ID D  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +++E +L+ + ++ V F   +++ + EP + P+ FPNLL NG  GIA G AT IP H
Sbjct: 126 RLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +I NP I+IE++   I+GPDFPTGG IV  +  I ++++ G+G  ++ +
Sbjct: 186 NLGEVIDATILMIKNPGITIEEISTIILGPDFPTGG-IVYGKSGIFDAFKTGKGKIKISS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            + + E   G   I +T IP+ + KS LIE+I ++    +I  ++++ D+S ++   +L 
Sbjct: 245 DYKIFE-KNGQNVIEITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVSILI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +PDL++  +   + ++  +  N   +     P+++ +  ++  +L H R++   
Sbjct: 304 ELEQDGNPDLIINYLLQKTHLQIHYSYNSVAICD-NSPKLLSIKEMIFYYLEHLRKIKLA 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----PVMVSRFSLTENQVDA 430
             +F +    +R+EI+ G L      DE+I +IR  D  K      ++  F+ ++ Q +A
Sbjct: 363 EFNFELYKNKKRLEIITGFLKVADITDEVIKVIRASDNSKVGVVSDLIKFFNFSQTQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I ++RL  L K+E+     E  NL     +   L+ +  +    +   + + K+   K  
Sbjct: 423 IASMRLYRLSKIEQQIYLEESKNLEKNIARFKKLIENKDEFDKNLINMLTDFKKHHGKPR 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                 +        D+    +         +  S       +K+   D           
Sbjct: 483 KTKIIDSDIKIKINKDELVKDEFFY----FWITKSGLYKKLDIKNSLPDEIEKTQLPNGD 538

Query: 551 LK-IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL--NHNQDIVTAF- 606
                   +   + + L+  G+   L    +           L I L   +NQ I++ F 
Sbjct: 539 FFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFF 598

Query: 607 --VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLVVKVTG-DHVA 662
              ++S+  L+ +S    A  +   +++   +K      +    +++  V       ++ 
Sbjct: 599 ADSFESSQFLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRFKEGDELISVFLEEKLKNIV 658

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDSAGRSYN 720
           ++    + L  SI +IP  +R   G+++    K+  IS     +  E L  ID   +   
Sbjct: 659 LITTQNRALKMSISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSESLAVIDFNSQFEK 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFP 745
            +  +L       G    L PK F 
Sbjct: 719 INTENLFF-----GNK-ILTPKNFK 737


>gi|304389377|ref|ZP_07371341.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327366|gb|EFL94600.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 844

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/810 (28%), Positives = 372/810 (45%), Gaps = 85/810 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S+    E ++ + +   +E  +L YA S I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 1   MSDSSL---ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS R+VG+V+GKLHPHGD ++YD+LVRLAQPF  R PLI G GNFG++D D 
Sbjct: 58  LTPDKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DG 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+   A  ++  +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAV
Sbjct: 117 PAAARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGANGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HNV E   AA+ L+D+P+    +L++Y  GPD P GGIIV   + I E+Y  
Sbjct: 177 GMATNIPPHNVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIV-GLDGIREAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IV+TE+PYQV   R+ EK+ E + + ++  +   +D S
Sbjct: 236 GRGIFITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLS 295

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++ S++  + ++  F +N   L     P+ + L   L+ +
Sbjct: 296 DRTHGMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVD-GQPRTLGLKAALQVF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR  D     +  +++ F
Sbjct: 355 VDHRVEVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMTVF 414

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q + IL LRLR L K    ++++E D L     +++ +L S ++  + +  ++R+
Sbjct: 415 DLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIAELEQILASTEKLHDVVRSDMRQ 474

Query: 482 VKEIFSKSTDLGRRRTTFCEVS---------------RADKATLQQAMIEKEPITVVISN 526
                S       RRT   E                  A   +     +   P  +++  
Sbjct: 475 TAARLSTP-----RRTVLLEEDGSAVAASKDAALPVLGAMTVSDVPLEVPDVPCRIILGA 529

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            G    L                ++  ++  HT     ++++ G    L   +L  G   
Sbjct: 530 DGRAIRLT--HTGPVTRLEGFNSTIAGSILTHTRGSFGVVTSSGFVVRLDVLSLPPGEKS 587

Query: 587 GEAIQLLID-------------------------------------LNHNQDIVTAFVYD 609
             A                                           L   + +V     D
Sbjct: 588 SLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAPQLSAAARLEDGETVVGILTLD 647

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               + +++++G    +       +T+   + + +   +++        D  + ++  + 
Sbjct: 648 EDETVGMMTARGIVKRMRPD--YPSTQDRFSIINLEGTDQLIYAGACPDDAQIVMISTDA 705

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE---------GLTWIDS---A 715
           +LL    +++    R   GV   S K+            E             +++   A
Sbjct: 706 QLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPDELVAATTVATVAAIMNAMPGA 765

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +S  +        +  RG  G  V +   
Sbjct: 766 NQSSIKLTPLDRYPVKGRGAQGVRVQRFLK 795



 Score = 41.7 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 60/178 (33%), Gaps = 22/178 (12%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
              +       +    +I+L     ++ A       +++++S+         +++    R
Sbjct: 661 VKRMRPDYPSTQDRFSIINLEGTDQLIYAGACPDDAQIVMISTDAQLLRTPANKVRPQGR 720

Query: 637 K--GKTFLKVSSEEKMKLVVKVTGD-------------HVAVVGENRKLLIF-SIDQIPE 680
              G   + +    ++     V  +               A+ G N+  +    +D+ P 
Sbjct: 721 NAGGVAGMSLKEHTQVIAGAIVPDELVAATTVATVAAIMNAMPGANQSSIKLTPLDRYPV 780

Query: 681 MSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             RG +GVR+Q +  G  +  + F   + +  ID+          +L      R G G
Sbjct: 781 KGRGAQGVRVQRFLKGEYALDMAFVGPDPIHAIDA--HGKPVKLPELDER---RDGSG 833


>gi|255522630|ref|ZP_05389867.1| DNA gyrase subunit A [Listeria monocytogenes FSL J1-175]
          Length = 514

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 208/516 (40%), Positives = 323/516 (62%), Gaps = 12/516 (2%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 7   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA R
Sbjct: 67  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+
Sbjct: 127 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+H++ E+ +  LAL  +P+I+I  L+EYI GPDFPT G+I   R  I  +Y  GRG  
Sbjct: 187 IPTHHLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMI-MGRSGIRRAYESGRGSI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES     
Sbjct: 246 TVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGM 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ 
Sbjct: 306 RIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVD-NHPKVLNLKEILYHYLEHQKV 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQ 427
           V+ RR+ F ++  + R  IL+GL IA  NID II +IR           ++++F+L++ Q
Sbjct: 365 VIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++
Sbjct: 425 AQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYA 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
                 +RRT     +    +   + +I +E + + 
Sbjct: 485 D-----KRRTEIL--AGDLVSLEDEDLIPEEEVAIT 513


>gi|315655460|ref|ZP_07908360.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
 gi|315490400|gb|EFU80025.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
          Length = 845

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 224/811 (27%), Positives = 370/811 (45%), Gaps = 86/811 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S+    E ++ + +   +E  +L YA S I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 1   MSDSSL---ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS R+VG+V+GKLHPHGD ++YD+LVRLAQPF  R PLI G GNFG++D D 
Sbjct: 58  LTPDKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DG 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+   A  ++  +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAV
Sbjct: 117 PAAARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGANGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HNV E   AA+ L+D+P+    +L++Y  GPD P GGIIV   + I E+Y  
Sbjct: 177 GMATNIPPHNVGETINAAIYLLDHPQADTAELMKYCPGPDLPGGGIIV-GLDGIREAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IV+TE+PYQV   R+ EK+ E + + ++  +   +D S
Sbjct: 236 GRGIFITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLS 295

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++ S++  + ++  F +N   L     P+ + L   L+ +
Sbjct: 296 DRTHGMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVD-GQPRTLGLKAALQVF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR  D     +  +++ F
Sbjct: 355 VDHRVEVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMTVF 414

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q + IL LRLR L K    ++++E D L     +++ +L S ++  + +  ++R+
Sbjct: 415 DLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIAELEQILASTEKLHDVVRSDMRQ 474

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRA---------------DKATLQQAMIEKEPITVVISN 526
                S       RRT   E   +                  +     +   P  +V+  
Sbjct: 475 TAARLSTP-----RRTVLLEEDGSAVAASKDAALPVLGTMTVSDVPLEVPDAPCRIVLGA 529

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            G        +            ++  ++  HT     ++++ G    L   +L  G   
Sbjct: 530 DGRAIR--LANTGPVNRLEGFNSTIAGSILTHTRGCFGVVTSSGFVVRLDVLSLPPGEKS 587

Query: 587 GEAIQLLID--------------------------------------LNHNQDIVTAFVY 608
             A                                                + +V     
Sbjct: 588 SLADSAAGASSAAAAGSTETADIELNLSESAPPWSFDGAPQLSAAARFEDGETVVGILTL 647

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGEN 667
           D    + ++++ G    +       +T+   + + +   +++        D  + ++  +
Sbjct: 648 DEDETVGMMTAHGIVKRMRPD--YPSTQDRFSIINLDGTDQLIYAGACPDDAQIVMISTD 705

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE---------GLTWIDS--- 714
            +LL    +++    R   GV   S K+            +             +++   
Sbjct: 706 AQLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPDDLVAATTVATVAAIMNAMPG 765

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           A +S  +        +  RG  G  V +   
Sbjct: 766 ANQSSIKLTPLDRYPVKGRGAQGVRVQRFLK 796



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 61/178 (34%), Gaps = 22/178 (12%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
              +       +    +I+L+    ++ A       +++++S+         +++    R
Sbjct: 662 VKRMRPDYPSTQDRFSIINLDGTDQLIYAGACPDDAQIVMISTDAQLLRTPANKVRPQGR 721

Query: 637 K--GKTFLKVSSEEKMKLVVKVTGD-------------HVAVVGENRKLLIF-SIDQIPE 680
              G   + +    ++     V  D               A+ G N+  +    +D+ P 
Sbjct: 722 NAGGVAGMSLKEHTQVIAGAIVPDDLVAATTVATVAAIMNAMPGANQSSIKLTPLDRYPV 781

Query: 681 MSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             RG +GVR+Q +  G  +  + F   + +  ID+          +L      R G G
Sbjct: 782 KGRGAQGVRVQRFLKGEYALDMAFVGPDPIHAIDA--HGKPVKLPELDER---RDGSG 834


>gi|284931407|gb|ADC31345.1| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str. F]
          Length = 796

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 197/742 (26%), Positives = 371/742 (50%), Gaps = 29/742 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ V    L   +   +  YA   I+ERA+PD+RDG KPV RR+++ M  +GL +  +
Sbjct: 1   MDKKKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKS 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA  VGEVIGK HPHGD S+Y++LVR+ Q +    PLI  QGN G+IDGD+AAA RY
Sbjct: 61  YRKSAATVGEVIGKFHPHGDSSIYEALVRMTQTWKNNIPLIDMQGNNGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++    L+L+ ++++ V+F + +++ + EP + PS  PNLL NG++GIA G AT+I
Sbjct: 121 TEARLSHYGNLMLENINKETVNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P  N++E+ +  +  ID+P   +E +L+ + GPDFPTGGII++  + I  +Y  G+G   
Sbjct: 181 PPFNLKELIDVIIHRIDSPNCKLESILKLMPGPDFPTGGIILDD-DGIKNAYLTGKGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+         +  +VVT+IP++  K+ +I  I E++ A ++P LE++RDES      
Sbjct: 240 IRAKIV-----NENDQLVVTDIPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIR 294

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRRE 370
           V+   N   +  L     ++    + +   + N +    + P  M +   L  +L H   
Sbjct: 295 VVLQTNTKDEKVLATIKNYLYKYTQLQINYSFNNVVIDQKKPIQMSIFNYLDSYLNHAYT 354

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQ 427
           +L    SF ++   +R+E++ GL+ A   ID+II II+     +     +++++  +  Q
Sbjct: 355 ILRNAISFDLKKDQKRLEVINGLIKATSIIDQIILIIKKSKDKQDAINNLINKYQFSAIQ 414

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++LRL  L   +   +K E  +L    ++   LL       + +   +R  K++F+
Sbjct: 415 AEAIVSLRLYRLTNTDILALKEEKKSLDTNIKQYQLLLKDQNALNDHLKEILRSYKKLFN 474

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR---GWIRSLKSHSVDLSALH 544
                 +RR+T    +       + ++IEK+ + +V S       I   ++  ++ ++L 
Sbjct: 475 T-----KRRSTIG-GNIEKLVINEASIIEKKELYLVSSVDGLIKTIAYDQNKQLNPTSLK 528

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDI 602
            K+ D L   +   + +++  ++  G    + A  +   +     + +     +  N+ I
Sbjct: 529 IKQDDYLSDLIKVSSLNKVAFITNYGNVVVINAHKIKQAKPREIGMDINELTTIKDNEKI 588

Query: 603 VTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTG-- 658
           V      D   ++++VS  G    +  ++++     K  T + +  ++++     ++   
Sbjct: 589 VKLVELSDQNDRIVLVSKYGMIKQISVNDLVNIKSTKPTTCMSLKDDDELVCANLISDPN 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
             + ++ +N   L F I+++     +  GVR    K +  +      K       +    
Sbjct: 649 AELIIITKNAYALRFFINEVNLTGLKSMGVRAIKLKTNDEVIGFDQIKNSIDQLVLVKNK 708

Query: 717 RSYNRSENDLLGWLGKRGGVGS 738
           +      + +      R   G 
Sbjct: 709 QIKKLKASLIEN--QSRATQGK 728


>gi|7404425|sp|P73077|PARC_SYNY3 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
          Length = 920

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 223/783 (28%), Positives = 367/783 (46%), Gaps = 76/783 (9%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +     +    L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 4   KSFPSGQIIPTDLHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPD 63

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F+K AR+VG+V+GK HPHGDQSVYD+LVR+ Q F  RYPL++G GNFG++D D  AA 
Sbjct: 64  RPFRKCARVVGDVLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAM 123

Query: 130 RYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +A   +L+G+ E  VDF   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 124 RYTETRLAPIAMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGCSGIAVGMA 183

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HN+ E+ +  + LI+ P++S ++L + I GPDFPTGG I++S E I+++Y+ GRG
Sbjct: 184 TSIPPHNLGEVVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDS-EGILQAYQTGRG 242

Query: 249 GFRVRARWCVEEVG------RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              VR    +E +            IV+TE+P+QV K+  IEKIA L+   ++  + D+R
Sbjct: 243 LIPVRGVSHIETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKLDGISDLR 302

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R  +P+ +++ ++ ++ +++ F +    L     P  M L  IL+
Sbjct: 303 DESDRTGMRVVIELKRDAEPNAILQKLYRMTPLQSNFGVIFLALV-NNQPVQMSLRQILQ 361

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVS 419
           E+L  R + L R+    +    RR+E+L GLLI       + EI+    +    K  +  
Sbjct: 362 EFLQFREDTLLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTAKIQLQE 421

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R  ++  Q DAIL + +R +  LE  +++ E  +L    E++++L+   +++   +  E+
Sbjct: 422 RLGISLQQGDAILGMPMRRITGLEREKLQQEHTDLAQRIEQLETLIGDRQERLKALKKEL 481

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV----VISNRGWIRSLKS 535
           R +K+ F+       RRT   +   A    L          T+      S          
Sbjct: 482 RGLKKKFADE-----RRTKILQGMPAKIEPLPVNQDPLPEATIPPVESQSAPEEELDSPG 536

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLL------STDGKAYTLPAGNLLSGRGHGEA 589
                  +          +      D + L       +   +A   P       +    A
Sbjct: 537 EPEQEQLVLENSSPPTADSAPEAKQDDLNLAVKPTPKTVKQEAQPSPEVIATHSKLVSVA 596

Query: 590 IQLLIDL---------------------NHNQDIVTAFVYDS-TCK--------LLVVSS 619
            +  + L                      H +++ +A  ++    +        L+V+  
Sbjct: 597 EKNPLTLFTPQTPPAEAFLSINLQGEIAWHPEELTSANSFEPLDQQFSIQGRETLIVIGD 656

Query: 620 KGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVTG--------DHVAVVGENRK 669
            G AF V  ++I  +A TR     +   S ++    V   G          + +V +  +
Sbjct: 657 HGKAFPVAIADIPPLAVTRIPLLQILPKSAQRDATTVTFQGFLPPPEQPQDLLLVSQQGR 716

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKIC----EGLTWIDSAGRSYNR 721
           + + +  ++ E+   +G+ L   K+G +      V           G   + +       
Sbjct: 717 VKLLAGQELQELGP-RGLSLMKLKNGDLLQFAQLVTPVNPASAQNPGKNLVIATSNGRLL 775

Query: 722 SEN 724
             +
Sbjct: 776 RFD 778



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 79/226 (34%), Gaps = 29/226 (12%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF------ 606
                   + ++++   GKA+ +   ++         +  ++  +  +D  T        
Sbjct: 641 QQFSIQGRETLIVIGDHGKAFPVAIADIPPLAVTRIPLLQILPKSAQRDATTVTFQGFLP 700

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--------- 657
             +    LL+VS +G   ++   E+     +G + +K+ + + ++    VT         
Sbjct: 701 PPEQPQDLLLVSQQGRVKLLAGQELQELGPRGLSLMKLKNGDLLQFAQLVTPVNPASAQN 760

Query: 658 -GDHVAVVGENRKLLIFSIDQI------PEMSRGKGVRLQSYKDGGISDVICFKICEGLT 710
            G ++ +   N +LL F   Q+      P     +G      +    S V       G  
Sbjct: 761 PGKNLVIATSNGRLLRFDPAQVGLTCSSPS---AQGQEAMRLRA-TESLVGVLMASPGDR 816

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF---LSS 753
            +      Y +  +     LG  G +G+ V +   ++ +    +++
Sbjct: 817 VLLLTQAGYGKQLDLASVRLGNFGELGTTVMQFTSKADRLLTMVAA 862


>gi|16329694|ref|NP_440422.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
 gi|1652178|dbj|BAA17102.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
          Length = 944

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 223/783 (28%), Positives = 367/783 (46%), Gaps = 76/783 (9%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +     +    L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 28  KSFPSGQIIPTDLHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPD 87

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F+K AR+VG+V+GK HPHGDQSVYD+LVR+ Q F  RYPL++G GNFG++D D  AA 
Sbjct: 88  RPFRKCARVVGDVLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAM 147

Query: 130 RYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +A   +L+G+ E  VDF   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 148 RYTETRLAPIAMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGCSGIAVGMA 207

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HN+ E+ +  + LI+ P++S ++L + I GPDFPTGG I++S E I+++Y+ GRG
Sbjct: 208 TSIPPHNLGEVVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDS-EGILQAYQTGRG 266

Query: 249 GFRVRARWCVEEVG------RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              VR    +E +            IV+TE+P+QV K+  IEKIA L+   ++  + D+R
Sbjct: 267 LIPVRGVSHIETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKLDGISDLR 326

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R  +P+ +++ ++ ++ +++ F +    L     P  M L  IL+
Sbjct: 327 DESDRTGMRVVIELKRDAEPNAILQKLYRMTPLQSNFGVIFLALV-NNQPVQMSLRQILQ 385

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVS 419
           E+L  R + L R+    +    RR+E+L GLLI       + EI+    +    K  +  
Sbjct: 386 EFLQFREDTLLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTAKIQLQE 445

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R  ++  Q DAIL + +R +  LE  +++ E  +L    E++++L+   +++   +  E+
Sbjct: 446 RLGISLQQGDAILGMPMRRITGLEREKLQQEHTDLAQRIEQLETLIGDRQERLKALKKEL 505

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV----VISNRGWIRSLKS 535
           R +K+ F+       RRT   +   A    L          T+      S          
Sbjct: 506 RGLKKKFADE-----RRTKILQGMPAKIEPLPVNQDPLPEATIPPVESQSAPEEELDSPG 560

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLL------STDGKAYTLPAGNLLSGRGHGEA 589
                  +          +      D + L       +   +A   P       +    A
Sbjct: 561 EPEQEQLVLENSSPPTADSAPEAKQDDLNLAVKPTPKTVKQEAQPSPEVIATHSKLVSVA 620

Query: 590 IQLLIDL---------------------NHNQDIVTAFVYDS-TCK--------LLVVSS 619
            +  + L                      H +++ +A  ++    +        L+V+  
Sbjct: 621 EKNPLTLFTPQTPPAEAFLSINLQGEIAWHPEELTSANSFEPLDQQFSIQGRETLIVIGD 680

Query: 620 KGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVTG--------DHVAVVGENRK 669
            G AF V  ++I  +A TR     +   S ++    V   G          + +V +  +
Sbjct: 681 HGKAFPVAIADIPPLAVTRIPLLQILPKSAQRDATTVTFQGFLPPPEQPQDLLLVSQQGR 740

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKIC----EGLTWIDSAGRSYNR 721
           + + +  ++ E+   +G+ L   K+G +      V           G   + +       
Sbjct: 741 VKLLAGQELQELGP-RGLSLMKLKNGDLLQFAQLVTPVNPASAQNPGKNLVIATSNGRLL 799

Query: 722 SEN 724
             +
Sbjct: 800 RFD 802



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 79/226 (34%), Gaps = 29/226 (12%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF------ 606
                   + ++++   GKA+ +   ++         +  ++  +  +D  T        
Sbjct: 665 QQFSIQGRETLIVIGDHGKAFPVAIADIPPLAVTRIPLLQILPKSAQRDATTVTFQGFLP 724

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--------- 657
             +    LL+VS +G   ++   E+     +G + +K+ + + ++    VT         
Sbjct: 725 PPEQPQDLLLVSQQGRVKLLAGQELQELGPRGLSLMKLKNGDLLQFAQLVTPVNPASAQN 784

Query: 658 -GDHVAVVGENRKLLIFSIDQI------PEMSRGKGVRLQSYKDGGISDVICFKICEGLT 710
            G ++ +   N +LL F   Q+      P     +G      +    S V       G  
Sbjct: 785 PGKNLVIATSNGRLLRFDPAQVGLTCSSPS---AQGQEAMRLRA-TESLVGVLMASPGDR 840

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF---LSS 753
            +      Y +  +     LG  G +G+ V +   ++ +    +++
Sbjct: 841 VLLLTQAGYGKQLDLASVRLGNFGELGTTVMQFTSKADRLLTMVAA 886


>gi|78183589|ref|YP_376023.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CC9902]
 gi|78167883|gb|ABB24980.1| DNA topoisomerase IV subunit A [Synechococcus sp. CC9902]
          Length = 806

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 233/762 (30%), Positives = 379/762 (49%), Gaps = 46/762 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     ++K AR+VG+V+GK
Sbjct: 1   MQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYRKCARVVGDVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RYTE R+  +A   +L
Sbjct: 61  YHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTETRLAPIAHQALL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + + +D VDF   ++    EP V P++ P LL NG SGIAVGMATSIP HN+ E+ +  +
Sbjct: 121 EEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIPPHNLGEVVDGLI 180

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           ALI  P +S E+LLE I GPDFPTGG ++ S   + ++Y  GRG   +R     EEV  G
Sbjct: 181 ALIRQPGLSDERLLELIPGPDFPTGGEVLLS-SGLQDTYLQGRGSIPMRGVAHTEEVQLG 239

Query: 265 -----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +VVTE+PYQ+ K+  IEK+AE +   +I  + DIRDES  D   V+    R 
Sbjct: 240 KGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRDGMRVVVELRRD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            +P+ +++ +   + +++ F   +  L  G+  Q + L  +L+ +L +R   L RR+S  
Sbjct: 300 AEPEKVLKDLQRRTALQSNFGAILLALVNGQP-QQLSLRQLLQTFLDYRELTLIRRTSHA 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRL 436
           ++  + R+E+++GL+ A  N+  +IA+I+        +  ++ R  L E Q DA+L + L
Sbjct: 359 LRKTEDRLEVVEGLITALNNLQAVIAMIQEAKDAASARASLMVRLDLNERQADAVLAMPL 418

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L  LE+  ++ E+DNL  EKE++  LL +  Q  + +  E++ +K+ FS       RR
Sbjct: 419 RRLTGLEQESLRQEVDNLRNEKERLKLLLENRDQLLDAMVAELKTLKKRFSTP-----RR 473

Query: 497 TTFCEVSRADKATLQQAMIEKE-------------PITVVISNRGWIRSLKSHSVDLSAL 543
           T   E   A  A    +                     ++I   G ++ +    +     
Sbjct: 474 TRLVEGGDALIAERAASQRPNTELLRQQALAALPGDGRLLIQADGQVKIVTPQVLGRLHF 533

Query: 544 HFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                        ++ L      R+L +S +G+   +        +       L   L  
Sbjct: 534 GDPCPVSDAPSPARVILPIEPPPRLLAISANGRVALVR-WEFAGQQPGALERFLPSGLE- 591

Query: 599 NQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + IV              L ++SS G    +  +E++  + +  + +K+    ++K  V
Sbjct: 592 GEPIVAIAPLPMQESSDLSLGLLSSDGRFKRLPLAEVLELSGRATSVVKLKDGVQLKAAV 651

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
                H + +V +  ++L   I++  +P M R  +G        G    +I        T
Sbjct: 652 ICHEHHDLILVSDIGRMLRLPINEDVLPRMGRLAQGPMTMRLLPGE--HLIGALCPTKPT 709

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +      +       +RG +GS+  +    + +   
Sbjct: 710 ALLVSEQGRLARIDLTSIRSSQRGDLGSMAIQLVGDTDRITG 751


>gi|322807082|emb|CBZ04656.1| topoisomerase IV subunit A [Clostridium botulinum H04402 065]
          Length = 956

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 216/667 (32%), Positives = 362/667 (54%), Gaps = 30/667 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       
Sbjct: 8   PKDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RY
Sbjct: 68  YYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +++ +D+D V+  D Y+  + EP V P+KFPN+L NG  GIAVG+AT+I
Sbjct: 128 TEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  LA ID  EI+ ++LL YI GPD PTGG ++  ++S++ +Y  G G   
Sbjct: 188 PPHNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGG-VIIGKKSMLSAYETGEGRVT 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAE 307
           +RA+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  
Sbjct: 247 LRAKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDR 306

Query: 308 DVRIVLFPKNR---SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +    +    +       +  ++ ++  +D+++    NM  L+    P+ + L  +LK +
Sbjct: 307 NGIRAVIEFKKIATQDVVEKTLKYLYKKTDLQSNISFNMVALAD-GKPKTLGLKSMLKYY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR        +  ++ +F
Sbjct: 366 VEHQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           S T+ Q +AIL L L  L  LE    + E   L     K+  +L S K+    I  E+ E
Sbjct: 426 SFTDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIE 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-----LKSH 536
           VKE ++      +RRT+  E          + +I +E + + +SN G+ +          
Sbjct: 486 VKETYND-----KRRTSIIE-DDEKAKIDVEEIIVEEDVVLTLSNEGFTKRIALKSYNRS 539

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--- 593
           S ++  + ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L    
Sbjct: 540 SANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEII 599

Query: 594 IDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             ++ ++ I+ AF    + +   +L ++  G        +   N  K    LK+   E +
Sbjct: 600 KTIDLSETIMEAFSIEAFTAQKDMLFITDSGYIKKTTLDKFNTNYTK-IMALKLKKGESL 658

Query: 651 KLVVKVT 657
                V 
Sbjct: 659 VKADLVD 665



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 105/349 (30%), Gaps = 11/349 (3%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DEII  I   +             +  +  I +     ++K    +  +    ++A K K
Sbjct: 596 DEIIKTIDLSETIMEAFSIEAFTAQKDMLFITDS--GYIKKTTLDKFNTNYTKIMALKLK 653

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR-ADKATLQQAMIEKEP 519
               L            +   +K     S ++        + +    K          E 
Sbjct: 654 KGESLVKADLVDRTREEKFFNIKTQKGLSFNIEEPSLEPVDRNIIGYKLFDILPNDSIEK 713

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +    +       +      L  +   + +   I+L   ++  ++L   +GKAY +PA  
Sbjct: 714 VDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDSSKILVLFDDEGKAYYIPAFM 773

Query: 580 LLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
             S +  G  I        +  + ++ F ++    +   S KG       SE+       
Sbjct: 774 FQSIKEEGINISAFTGDKISLLNAISTFRFEEDISIYFSSEKGLIKRTLLSEL-KIEGNS 832

Query: 639 KTFLKVS-SEEKMKLVVKVTGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
               K    E+K+  ++         + ++ E   ++ F  + +  M +   GV   S K
Sbjct: 833 TQVYKFKHKEDKLVSILIKEHGEQKNILIITEKAMVIRFKSEAVNPMGKMASGVTGISLK 892

Query: 694 D-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           D   +         +              +       +  R G+G+ + 
Sbjct: 893 DLDKVILASIIDENDTRKIKIKTKAKDKGTIEINKIKVQNRAGIGNSLM 941


>gi|315656631|ref|ZP_07909518.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492586|gb|EFU82190.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 844

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 227/810 (28%), Positives = 372/810 (45%), Gaps = 85/810 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S+    E ++ + +   +E  +L YA S I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 1   MSDSSL---ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS R+VG+V+GKLHPHGD ++YD+LVRLAQPF  R PLI G GNFG++D D 
Sbjct: 58  LTPDKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DG 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+   A  ++  +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAV
Sbjct: 117 PAAARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGANGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HNV E   AA+ L+D+P+    +L++Y  GPD P GGIIV   + I E+Y  
Sbjct: 177 GMATNIPPHNVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIV-GLDGIREAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IV+TE+PYQV   R+ EK+ E + + ++  +   +D S
Sbjct: 236 GRGIFITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLS 295

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++ S++  + ++  F +N   L     P+ + L   L+ +
Sbjct: 296 DRTHGMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVD-GQPRTLGLKAALQVF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR  D     +  +++ F
Sbjct: 355 VDHRVEVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMTVF 414

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q + IL LRLR L K    ++++E D L     +++ +L S ++  + +  ++R+
Sbjct: 415 DLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIAELEQILASTEKLHDVVRSDMRQ 474

Query: 482 VKEIFSKSTDLGRRRTTFCEVS---------------RADKATLQQAMIEKEPITVVISN 526
                S       RRT   E                  A   +     +   P  +++  
Sbjct: 475 TAARLSTP-----RRTVLLEEDGSAVAASKDAALPVLGAMTVSDVPLEVPDVPCRIILGA 529

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            G    L                ++  ++  HT     ++++ G    L   +L  G   
Sbjct: 530 DGRAIRLT--HTGPVTRLEGFNSTIAGSILTHTRGSFGVVTSSGFVVRLDVLSLPPGEKS 587

Query: 587 GEAIQLLID-------------------------------------LNHNQDIVTAFVYD 609
             A                                           L   + +V     D
Sbjct: 588 SLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAPQLSAAARLEDGETVVGILTLD 647

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               + +++++G    +       +T+   + + +   +++        D  + ++  + 
Sbjct: 648 KDETVGMMTARGIVKRMRPD--YPSTQDRFSIINLEGTDQLIYAGACPDDAQIVMISTDA 705

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE---------GLTWIDS---A 715
           +LL    +++    R   GV   S K+            E             +++   A
Sbjct: 706 QLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPDELVAATTVATVAAIMNAMPGA 765

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +S  +        +  RG  G  V +   
Sbjct: 766 NQSSIKLTPLDRYPVKGRGAQGVRVQRFLK 795



 Score = 41.7 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 60/178 (33%), Gaps = 22/178 (12%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
              +       +    +I+L     ++ A       +++++S+         +++    R
Sbjct: 661 VKRMRPDYPSTQDRFSIINLEGTDQLIYAGACPDDAQIVMISTDAQLLRTPANKVRPQGR 720

Query: 637 K--GKTFLKVSSEEKMKLVVKVTGD-------------HVAVVGENRKLLIF-SIDQIPE 680
              G   + +    ++     V  +               A+ G N+  +    +D+ P 
Sbjct: 721 NAGGVAGMSLKEHTQVIAGAIVPDELVAATTVATVAAIMNAMPGANQSSIKLTPLDRYPV 780

Query: 681 MSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             RG +GVR+Q +  G  +  + F   + +  ID+          +L      R G G
Sbjct: 781 KGRGAQGVRVQRFLKGEYALDMAFVGPDPIHAIDA--HGKPVKLPELDER---RDGSG 833


>gi|78778390|ref|YP_396502.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str. MIT
           9312]
 gi|78711889|gb|ABB49066.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str. MIT
           9312]
          Length = 813

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 205/738 (27%), Positives = 364/738 (49%), Gaps = 26/738 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++   ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MDKKKFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  +YP + G GNFG++D D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSTKYPTLDGHGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++    L+ +D + V+F + ++    EP V P++ P LL NG+SGIAVGMAT+
Sbjct: 121 TETRLAPISHKGFLEEIDSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  +ALI+N E+S +KL   I GPDFPTGG ++ SR  I E Y  G+G  
Sbjct: 181 IPPHNLGEIVDGLIALINNKEVSNKKLSNIIKGPDFPTGGELIYSRA-IEELYATGKGSI 239

Query: 251 RVRAR-----WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R         + +       +++TE+P+Q+ K+  IEK+AEL+ + +I  + DIRDES
Sbjct: 240 TIRGVINSEAINLGKGKHKRNALIITELPFQISKAGWIEKLAELVNSSKINGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    +  + +L++ +++  + ++T F      L     P  + L   L  +L
Sbjct: 300 DRDGMRIVIELKKDSNAELVISNLYKKTTLQTNFGAIFLALIK-GKPVQLNLKQYLNYFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
             R E + +R+++ ++    ++EIL+GL  A  NI +II II + +            F 
Sbjct: 359 EFREETIRKRTNYFLKNTLEKLEILEGLSKATKNIKKIIEIIEDSENSAEAKSKLIDIFY 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q +++L++ L+ L  LE+ QI  ++  L  +K+   +LLN  K     +  E+  +
Sbjct: 419 LSAKQANSVLDMPLKKLTNLEKNQIDEDIRKLQEKKDYFQNLLNERKLLLELLVDELLIL 478

Query: 483 KEIFSKSTDLG--RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           K+ ++        +      E+   +   L+  + +K  + +          L ++    
Sbjct: 479 KKKYNVKRKTKLLKNIDQNEELETINNQILEDFINKKTKLFIDNRLYLRKMILNNYKKSF 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
             ++    +        +    + ++   G  YT    ++          +L   +  N 
Sbjct: 539 EDVNKIIDNKNIQKFICNIDKNVKII---GITYTGKVFHINWESNINNDYKLDKKIIGNI 595

Query: 601 DIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK-LVV 654
           D      + S        L +++S G    V   E +  + +  +  K+ +  K     +
Sbjct: 596 DQNKIINFHSIKKGIKNYLCILNSDGRFKKVLFDEDMIKSNRCFSITKLKNNIKTIDSFI 655

Query: 655 KVTGDHVAVVGENRKLLIFSIDQ---IPEMSRGKGVRLQS-YKDGGISDVICFKICEGLT 710
                ++ ++    ++  F++      P   + +G+ L        I     ++  E + 
Sbjct: 656 FSEEKNLIILTSIGRMFKFNLSNKFLTPTTKQSQGLMLTKLLPTEKIVSCCSYQNGENIY 715

Query: 711 WIDSAGRSYNRSENDLLG 728
            +   G+ +  + N++  
Sbjct: 716 LVSRKGKIFCINSNEIYY 733


>gi|330864105|emb|CBX74177.1| DNA gyrase subunit A [Yersinia enterocolitica W22703]
          Length = 481

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 192/411 (46%), Positives = 273/411 (66%), Gaps = 7/411 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  I+IE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P  
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAE 405


>gi|296454306|ref|YP_003661449.1| DNA gyrase/topoisomerase IV subunit A [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183737|gb|ADH00619.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 909

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/791 (28%), Positives = 359/791 (45%), Gaps = 60/791 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L  
Sbjct: 13  DPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG
Sbjct: 192 TNLATHNLGEVVNAAKFLMAHPDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYANGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   
Sbjct: 251 TLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP  ++  +F  + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 311 NGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVD-GRPHTMGLKEMLQVWVDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           RR V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR  D        +++ F L 
Sbjct: 370 RRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKTRLMAVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E   
Sbjct: 430 EVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVA 489

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT   +       T   A        V  S    +++  + S   + + 
Sbjct: 490 KWGSP-----RRTVLLDADPDGTLTPVVAQGA-GASGVSKSALEAVKAATTISSAEADVA 543

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT----LPAGNLLSGRGHGEAIQLLIDLNHNQ 600
                + K    +  T  + +             L A    S            +   + 
Sbjct: 544 AAAAAAKKTGERSALTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNVRSTSDERLRDD 603

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVV--- 654
            I T F   +     +V+S G   +    ++ A        L +      +++  +    
Sbjct: 604 QITTIFETSTRATYGLVTSAGRLVLAHVVDLPALPAS--ATLSLKGGVQADELIGMTEST 661

Query: 655 -KVTGDHVAVVG-----ENRKLLIFSIDQ---------IPEMSRGK--GVR--------- 688
             + G+ V          + K       +         +P ++ G   GV          
Sbjct: 662 DPIRGERVITAIAMEQPTSGKASAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAPT 721

Query: 689 ------LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 +   KDG           +      S+  S   +          R   G    K
Sbjct: 722 TMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSL-LTFEAKNVRPQGRTAGGMAGIK 780

Query: 743 GFPRSGKFLSS 753
                G  +++
Sbjct: 781 LAE--GARVAA 789



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 12/168 (7%), Positives = 33/168 (19%), Gaps = 30/168 (17%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLI 672
           L + +  G             T      + +   +++        D  +  +  +  LL 
Sbjct: 703 LAIGTRNGVIKRWNRE--APTTMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLT 760

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGIS--------------------------DVICFKI 705
           F    +    R   G+      +G                               +   +
Sbjct: 761 FEAKNVRPQGRTAGGMAGIKLAEGARVAAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTV 820

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +        +     +     R   G    +        + +
Sbjct: 821 AGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTLILA 868


>gi|294660439|ref|NP_853201.2| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(low)]
 gi|284812099|gb|AAP56769.2| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930683|gb|ADC30622.1| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(high)]
          Length = 796

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/742 (26%), Positives = 371/742 (50%), Gaps = 29/742 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ V    L   +   +  YA   I+ERA+PD+RDG KPV RR+++ M  +GL +  +
Sbjct: 1   MDKKKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKS 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA  VGEVIGK HPHGD S+Y++LVR+ Q +    PLI  QGN G+IDGD+AAA RY
Sbjct: 61  YRKSAATVGEVIGKFHPHGDSSIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++    L+L+ ++++ V+F + +++ + EP + PS  PNLL NG++GIA G AT+I
Sbjct: 121 TEARLSHYGNLMLENINKETVNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P  N++E+ +  +  ID+P   +E +L+ + GPDFPTGGII++  + I  +Y  G+G   
Sbjct: 181 PPFNLKELIDVIIHRIDSPNCKLESILKLMPGPDFPTGGIILDD-DGIKNAYLTGKGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+         +  +VVT+IP++  K+ +I  I E++ A ++P LE++RDES      
Sbjct: 240 IRAKIV-----NENDQLVVTDIPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIR 294

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRRE 370
           V+   N   +  L     ++    + +   + N +    + P  M +   L  +L H   
Sbjct: 295 VVLQTNTKDEKVLATIKNYLYKYTQLQINYSFNNVVIDQKKPIQMSIFNYLDSYLNHAYT 354

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQ 427
           +L    SF ++   +R+E++ GL+ A   ID+II II+     +     +++++  +  Q
Sbjct: 355 ILRNAISFDLKKDQKRLEVINGLIKATSIIDQIILIIKKSKDKQDAINNLINKYQFSAIQ 414

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++LRL  L   +   +K E  +L    ++   LL       + +   +R  K++F+
Sbjct: 415 AEAIVSLRLYRLTNTDILALKEEKKSLDTNIKQYQLLLKDQNALNDHLKEILRSYKKLFN 474

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR---GWIRSLKSHSVDLSALH 544
                 +RR+T    +       + ++IEK+ + +V S       I   ++  ++ ++L 
Sbjct: 475 T-----KRRSTIG-GNIEKLVINEASIIEKKELYLVSSVDGLIKTIAYDQNKQLNPTSLK 528

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDI 602
            K+ D L   +   + +++  ++  G    + A  +   +     + +     +  N+ I
Sbjct: 529 IKQDDYLSDLIKVSSLNKVAFITNYGNVVVINAHKIKQAKPREIGMDINELTTIKDNEKI 588

Query: 603 VTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTG-- 658
           V      D   ++++VS  G    +  ++++     K  T + +  ++++     ++   
Sbjct: 589 VKLVELSDQNDRIVLVSKYGMIKQISVNDLVNIKSTKPTTCMSLKDDDELVCANLISDPN 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
             + ++ +N   L F I+++     +  GVR    K +  +      K       +    
Sbjct: 649 AELIIITKNAYALRFFINEVNLTGLKSMGVRAIKLKTNDQVIGFDQIKNSIDQLVLVKNK 708

Query: 717 RSYNRSENDLLGWLGKRGGVGS 738
           +      + +      R   G 
Sbjct: 709 QIKKLKVSLIEN--QSRANQGK 728


>gi|159037301|ref|YP_001536554.1| DNA topoisomerase IV subunit A [Salinispora arenicola CNS-205]
 gi|157916136|gb|ABV97563.1| DNA topoisomerase (ATP-hydrolyzing) [Salinispora arenicola CNS-205]
          Length = 827

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 217/765 (28%), Positives = 369/765 (48%), Gaps = 46/765 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L   + + YL YA S I  RA+PD RDG KPVHRRI+ +M E G        KS
Sbjct: 20  RVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMYESGHRPDRGHVKS 79

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPH D ++YD+LVRLAQ F    PLI G GNFG+ D D  AA RYTEAR
Sbjct: 80  ARVVGDVMGKYHPHSDVAIYDALVRLAQDFSLNTPLIDGHGNFGSPD-DGPAAARYTEAR 138

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++ A L++  + ED VD    Y+   ++P V P+ FPNLL NG SGIAVGMAT++  HN
Sbjct: 139 MSREAMLLVGELGEDTVDLEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHN 198

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  AA  LI++P+ +++KL+E++ GPD PTGG+++   + +  +Y  GRG  R+RA+
Sbjct: 199 LGEVVTAARWLINHPDATLDKLMEFVPGPDLPTGGLLLG-LDEVRRAYETGRGVVRMRAK 257

Query: 256 WCV--EEVGRGSWCIVVTEIPYQVQKSRLIEKI-AELIIAKRIPLLEDIRDESAEDV-RI 311
             +   E  RG   I V E+PY +   ++I  +  E+   KR+  + D++D +  +    
Sbjct: 258 VEIGPIEGSRGRQAITVVELPYGIGAEKVIAAVTNEVTKTKRLTGIADVKDLTDRENGTR 317

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++      ++P  L+  ++ L+ +E  F +N  VL     P+ + L  +L+ +LAHR EV
Sbjct: 318 LVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVD-GQPRTLGLKALLEVFLAHRYEV 376

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQV 428
           + RRS++R +  + R+ ++ GLL+A L+ID+++ +IR  +  +     ++ RF L+E Q 
Sbjct: 377 VTRRSAYRRRRREERLHLVDGLLVALLDIDQVVRLIRGSEDAQAAKEGLMRRFGLSEVQA 436

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L + +  ++++E + L +E  ++  LL+  K     ++ E+  V +  + 
Sbjct: 437 TYILDTPLRRLTRYDRLELEAEQEKLRSEIAELSRLLDDRKVLRKVVSNELAAVVKQSAA 496

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                 RRTT  +    +               +P  V++S+ G +    + S + +   
Sbjct: 497 P-----RRTTLVDGDLKEVLAASVPSGPLEVADDPCQVILSSTGLVARTAAESEEAAEGS 551

Query: 545 FKEGDSLKIALHAHTTD----RILLLSTDGKAYTLPA--------GNLLSGRGHGEAIQL 592
            + G     A+ A        R+LL+++ G+A+ +           +       G ++  
Sbjct: 552 RRHGRVRHDAVRAVAHSTARGRVLLVTSGGRAFKVDVLPLPVLPEQSGTVSLRGGMSVAE 611

Query: 593 LIDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L+ L   + +V       + +    L + + +G   +                + +   +
Sbjct: 612 LVPLAPGETVVGIAPLGPSAEGSPGLALGTRRGMVKVCAPE--WPVRADEFEVISLRDGD 669

Query: 649 KMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKI 705
           ++     +T   + +  V     LL +S   +     RG GV                  
Sbjct: 670 EVVGATWLTDGAESLTFVTSEASLLRYSTGLVRPQGLRGGGVAGVGLSGDARVVFFGAVR 729

Query: 706 CEGLT-----WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +  T      + S G +  +           R   G    +   
Sbjct: 730 TDDPTHGEPMVVTSTG-ATVKVTPFAAYPAKGRATGGVRSQRFLK 773


>gi|168183164|ref|ZP_02617828.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Bf]
 gi|237796207|ref|YP_002863759.1| DNA topoisomerase IV subunit A [Clostridium botulinum Ba4 str. 657]
 gi|182673665|gb|EDT85626.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Bf]
 gi|229261223|gb|ACQ52256.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Ba4 str. 657]
          Length = 956

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 215/667 (32%), Positives = 362/667 (54%), Gaps = 30/667 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       
Sbjct: 8   PKDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RY
Sbjct: 68  YYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +++ +D+D V+  D Y+  + EP + P+KFPN+L NG  GIAVG+AT+I
Sbjct: 128 TEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEILPAKFPNILVNGAFGIAVGLATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  LA ID  EI+ ++LL YI GPD PTGG ++  ++S++ +Y  G G   
Sbjct: 188 PPHNLVEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGG-VIIGKKSMLSAYETGEGRVT 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAE 307
           +RA+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  
Sbjct: 247 LRAKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDR 306

Query: 308 DVRIVLFPKNR---SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +    +    +       +  ++ ++  +D+++    NM  L+    P+ + L  +LK +
Sbjct: 307 NGIRAVIEFKKIATEDIVEKTLKYLYKKTDLQSNISFNMVALAD-GKPKTLGLKSMLKYY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR        +  ++ +F
Sbjct: 366 VEHQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           S T+ Q +AIL L L  L  LE    + E   L     K+  +L S K+    I  E+ E
Sbjct: 426 SFTDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIE 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-----LKSH 536
           VKE ++      +RRT+  E          + +I +E + + +SN G+ +          
Sbjct: 486 VKETYND-----KRRTSIIE-DDEKAKIDVEEIIVEEDVVLTLSNEGFTKRIALKSYNRS 539

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--- 593
           S ++  + ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L    
Sbjct: 540 SANVEDIEYREGDFNRFLIQCNTKDTLCLITKEGNMYQIKVINIPEFKWKEKGVKLDEII 599

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             ++ ++ I+ AF    + +   +L ++  G        +   N  K    LK+   E +
Sbjct: 600 KTIDLSETIIEAFSIEDFTAQKDMLFITDSGYIKKTTLDKFNTNYTK-IMALKLKKGESL 658

Query: 651 KLVVKVT 657
                V 
Sbjct: 659 VKSDLVD 665



 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 106/349 (30%), Gaps = 11/349 (3%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DEII  I   +             +  +  I +     ++K    +  +    ++A K K
Sbjct: 596 DEIIKTIDLSETIIEAFSIEDFTAQKDMLFITDS--GYIKKTTLDKFNTNYTKIMALKLK 653

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR-ADKATLQQAMIEKEP 519
               L            +   +K     S ++        + +    K          + 
Sbjct: 654 KGESLVKSDLVDRTREEKFFNIKTQKGLSFNIEEPSLEPVDRNIIGYKLFDILPNDSIKK 713

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +    +       +      L  +   + +   I+L   ++  ++L   +GKAY +PA  
Sbjct: 714 VDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDSSKTLVLFDDEGKAYYIPAFM 773

Query: 580 LLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           L S +  G  I        +  + ++ F ++    +   S KG        E+       
Sbjct: 774 LQSIKEEGINISAFTGDKISLLNAISTFRFEEDISIYFSSEKGLIKRTLLGEL-KIEGNS 832

Query: 639 KTFLKVS-SEEKMKLVVKVTGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
               K    ++K+  ++    +    + ++ E   ++ F  + +  M +   GV   S K
Sbjct: 833 TQVYKFKHKDDKLVSILIKEHEEQKNILIITEKAMVIRFKSEAVNPMGKMASGVTGISLK 892

Query: 694 D-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           D   +         +              +       +  R G+G+ + 
Sbjct: 893 DLDKVILASIVDENDTRKIKIKTKAKDKGTIEVNKIKVQNRAGIGNSLM 941


>gi|291516760|emb|CBK70376.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum F8]
          Length = 908

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 223/790 (28%), Positives = 358/790 (45%), Gaps = 59/790 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L  
Sbjct: 13  DPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG
Sbjct: 192 TNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYANGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               RA   +E V      IV+TE+PY V   ++IE+I++ +  +++  +    D +   
Sbjct: 251 TLTTRAATHIEHVTARKQAIVITELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP  ++  +F  + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 311 NGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALV-EGRPHTMGLKEMLQVWVDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLT 424
           RR V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR  D        ++  F L 
Sbjct: 370 RRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E   
Sbjct: 430 EVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVA 489

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT   +       T   A        V  S    +++  + S   + + 
Sbjct: 490 KWGSP-----RRTVLLDADPDGTLTPVVAQGA-GASGVSKSALEAVKAATTISSAEADVA 543

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT----LPAGNLLSGRGHGEAIQLLIDLNHNQ 600
                + K    +  T  + +             L A    S      A     +   + 
Sbjct: 544 AAAAAAKKTGERSALTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSTSDERLRDD 603

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVV--- 654
            I T F   +     +V+S G   +    ++ A        L +      +++  +    
Sbjct: 604 QITTIFETSTRATYGLVTSAGRLVLAHVVDLPALPAS--ATLSLKGGVQADELIGMTEST 661

Query: 655 -KVTGDHVAVVG-----ENRKLLIFSIDQ--------IPEMSRGK--GVR---------- 688
             + G+ V          + K       +        +P ++ G   GV           
Sbjct: 662 DPIRGERVITAIAMEQPTSGKASAEDESEDGAAEAKPLPPLAIGTRNGVIKRWNREAPTT 721

Query: 689 -----LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                +   KDG           +      S+  S   +          R   G    K 
Sbjct: 722 MDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSL-LTFEAKNVRPQGRTAGGMAGIKL 780

Query: 744 FPRSGKFLSS 753
               G  +++
Sbjct: 781 AE--GARVAA 788



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 12/168 (7%), Positives = 33/168 (19%), Gaps = 30/168 (17%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLI 672
           L + +  G             T      + +   +++        D  +  +  +  LL 
Sbjct: 702 LAIGTRNGVIKRWNRE--APTTMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLT 759

Query: 673 FSIDQIPEMSRGKG-VRLQSYKDGGIS--------------------------DVICFKI 705
           F    +    R  G +      +G                               +   +
Sbjct: 760 FEAKNVRPQGRTAGGMAGIKLAEGARVAAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTV 819

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +        +     +     R   G    +        + +
Sbjct: 820 AGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTLILA 867


>gi|302875223|ref|YP_003843856.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
 gi|307688904|ref|ZP_07631350.1| DNA topoisomerase IV subunit A [Clostridium cellulovorans 743B]
 gi|302578080|gb|ADL52092.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
          Length = 956

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 220/693 (31%), Positives = 376/693 (54%), Gaps = 35/693 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   + N+  V L  A+ E YL YA+   ++RA+PD+RDG KPVHRRI++    +     
Sbjct: 6   DIPTDSNIIQVPLEEAMPENYLPYAVEVARDRALPDVRDGLKPVHRRILYGAHLLKAYPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGDSAAA 
Sbjct: 66  RPYYKSARIVGDILGKFHPHGDSSVYDAMVILAQDFTTRKPLIDGHGNWGSIDGDSAAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+T +A  +L+ +D+D V+  + Y++ + EP V P+K+PNLL NG  GIAVG+AT
Sbjct: 126 RYTEARLTPLALEMLKDIDKDVVNMVNNYSDSELEPEVLPAKYPNLLVNGVFGIAVGLAT 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  LA IDN +I+ ++L+ +I GPD PTGGI++  ++SI+ +Y  G G 
Sbjct: 186 NIPPHNLGEVIDGTLAFIDNKDITTKELMNHIKGPDLPTGGILI-GKDSILSAYESGNGR 244

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDES 305
             +RA+  +E++  G   +V+TE P++  K+RL++ I+E+   K+    +  + DIRDES
Sbjct: 245 VTLRAKTKIEKLENGRLGVVITEFPFRKNKARLLQSISEMTADKKHSKALEGIADIRDES 304

Query: 306 AEDVRIVLFPKNRSLDPDL-LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKE 363
                  +    +S+D         ++L   E +  L  N++      P+ M L  +L  
Sbjct: 305 DRTGIRAVIEFKKSVDEMQGDKILKYLLKKTELQVNLPFNMVAIASGKPETMGLRTMLWH 364

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSR 420
           ++ H++EV+ RR+   ++  +RR  I++G + A   +D+II  IR+          ++++
Sbjct: 365 YIEHQKEVVTRRTRKELEIAERRFHIVEGFIKAINIMDQIIETIRSSKSKSDASQNLIAK 424

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F  TE Q  AIL L L  L  LE    + E   L     K+ ++L+S ++  N I  E+ 
Sbjct: 425 FDFTELQATAILELMLYRLTGLEITAFEKEYKELSKLIRKLKNILDSERELLNVIKQELL 484

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-- 538
           E+K+ ++ +     RRT   +     K  + + ++  E I + +SN G+I+ +   +   
Sbjct: 485 EIKDKYADA-----RRTQIIDDENEAKIDMDELIV-VEDIVITLSNEGYIKRVPQKTYVR 538

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
              +   + ++EGD  +  + ++T + IL+ + +G  Y      +   R   +  +L   
Sbjct: 539 SNSNPQDIEYREGDYNRFIISSNTLETILVFTDNGNMYQFKGNAIPELRWKEKGERLDTI 598

Query: 596 LNHN----QDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           +       + IVTA           +  +++KG       S+  ++  K    +K+  ++
Sbjct: 599 IKGMNLDSERIVTALSIKDFSGPFNVQFITNKGIIKKTSLSKFASSYTK-LMAIKLKEDQ 657

Query: 649 KMKLVVKVTGDH----VAVVGENRKLLIFSIDQ 677
           K+  V     +     V ++      L F++++
Sbjct: 658 KLVSVEIFDCEREERFVQILTSQG--LTFTVNE 688



 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 18/190 (9%), Positives = 61/190 (32%), Gaps = 8/190 (4%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTC 612
           +  +  R+++++++G    + +  L +       +    +++ +   +       +    
Sbjct: 751 YTDSEARLIIITSEGNVLNIASNVLENVTEPFNIVNSFGEIDKSNKFIGIINVSDFKEDS 810

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTGD--HVAVVGENRK 669
            ++  S +G        E        + + K+ ++ +++     +  +  +  +V +   
Sbjct: 811 YIIFFSKRGYVKKTSLKEYQGEYLCSQGY-KLKNDSDELVGASLIKNEAENFVLVTQKGM 869

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            +  + + + EM +   GV   S KD                   +      +  N    
Sbjct: 870 AIRVNCNDVNEMGKIASGVIGISLKDEDFVIYGNTISDNDHYIKITTKNKEEKDYNLSDL 929

Query: 729 WLGKRGGVGS 738
            +  R   G 
Sbjct: 930 PIQNRATRGK 939



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/124 (11%), Positives = 42/124 (33%), Gaps = 10/124 (8%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLI 672
           ++ +S++G    V +   + +       ++    +  + ++     + + V  +N  +  
Sbjct: 519 VITLSNEGYIKRVPQKTYVRSNSNP-QDIEYREGDYNRFIISSNTLETILVFTDNGNMYQ 577

Query: 673 FSIDQIPEMS-RGKG------VRLQSYKDGGISDVICFKICEG-LTWIDSAGRSYNRSEN 724
           F  + IPE+  + KG      ++  +     I   +  K   G         +   +  +
Sbjct: 578 FKGNAIPELRWKEKGERLDTIIKGMNLDSERIVTALSIKDFSGPFNVQFITNKGIIKKTS 637

Query: 725 DLLG 728
               
Sbjct: 638 LSKF 641


>gi|159029636|emb|CAO87714.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 884

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 223/752 (29%), Positives = 365/752 (48%), Gaps = 43/752 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L    +   +L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     
Sbjct: 8   LASGQIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQSVY++LVR+ Q F  RYPL+SG GNFG+ID D  AA RY
Sbjct: 68  FRKCARVVGDVLGKYHPHGDQSVYEALVRMVQDFSSRYPLLSGHGNFGSIDNDPPAAMRY 127

Query: 132 TEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  + +  +L G+ E  V+F   ++    EPVV P++ P L+ NG SGIAVGMAT+
Sbjct: 128 TETRLAGIGDQAVLGGISEAIVNFSSNFDNSQQEPVVLPAQLPILILNGCSGIAVGMATN 187

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ E  +ALIDNP++S EKL+E I GPDFPTGG I++    I E+YR GRG  
Sbjct: 188 IPPHNLGEVVEGLIALIDNPDLSEEKLVEIIPGPDFPTGGEILDDT-GIREAYRTGRGII 246

Query: 251 RVRARWC----VEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            VR        + E  R      IVVTE+P+QV K+  IEKIAEL+   ++  + DIRDE
Sbjct: 247 PVRGVAKTETIIIEGKRRRERTAIVVTELPFQVNKAAWIEKIAELVNLGKLEGIADIRDE 306

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   V+    R   P  ++ +++  + ++T F   +  L     P+ + L  +L+E+
Sbjct: 307 SNREGIRVVIELKRESQPQQVLAALYQQTALQTNFGAIILALVD-NQPRQLSLKQVLQEF 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---F 421
           L  R   L R+    +Q    R+ +++GLL+A  NID ++ I++N               
Sbjct: 366 LRFRETTLTRQYGDELQQASDRLHLVEGLLLALQNIDRVVDILKNAPDGTTAKYRFQAEL 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            +++ Q D+IL + LR L  LE  ++++E   L  + +++++LL++ ++    +  E+R 
Sbjct: 426 GISDPQADSILAMPLRRLTGLERQKLETEATELQTKIQQLETLLHNRQEFLKSLKKELRS 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           +K+ F+ S     R     +  +  +     ++++K+         G  +   +     S
Sbjct: 486 LKKKFADSRRTKIRTGKSGDRRQETEGKKLDSVVKKQETGERRQETGDGKQQAAGKKQDS 545

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            +  +E    K        +  +   ++ +     A +L            ++ L+    
Sbjct: 546 VVKKQETADGKREAEVKKQENKVKKKSESE----NAPSLSLFTPQEPPENAILLLDAEDK 601

Query: 602 IV-----------TAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-- 644
           I               +Y    +     LV+     A+ +   E+     +      +  
Sbjct: 602 ISWTTPEERVPDRDLIIYQQAIEKQENFLVILDNAKAYPISILEVPPQGNQPVLISSLLT 661

Query: 645 ----SSEEKMK----LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG 696
                  E +     L        + ++ +  ++   SI+++  +   +G+ L   K+  
Sbjct: 662 KTAQKESEAVLNQFFLTKPQKNQELLLLSQQGRIKRLSINELEGVG-SRGLSLMKLKEDD 720

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
                 F   EGL    +              
Sbjct: 721 RLYAAIFTH-EGLDLAIATSSGRVLRYPVREE 751



 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 60/146 (41%), Gaps = 5/146 (3%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRK 669
             +LL++S +G    +  +E+     +G + +K+  ++++   +    G  +A+   + +
Sbjct: 683 NQELLLLSQQGRIKRLSINELEGVGSRGLSLMKLKEDDRLYAAIFTHEGLDLAIATSSGR 742

Query: 670 LLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           +L + + +  +P M +  +G+ +   + G      C  +      +  +G  Y +     
Sbjct: 743 VLRYPVREELLPIMGKSAQGLAILRLRYGEHL-AGCVSLPHRENLLLISGLGYGKRLAIE 801

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLS 752
              L + G +GS   +   +     +
Sbjct: 802 NLRLSQLGDLGSPALQFVNKQDSLAA 827


>gi|188587953|ref|YP_001920143.1| DNA topoisomerase IV subunit A [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498234|gb|ACD51370.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43]
          Length = 969

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 212/670 (31%), Positives = 364/670 (54%), Gaps = 33/670 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L  A+ E YL YA+   KERA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++  LAQ F  R PLI G GN+G+IDGDSAAA RYTE
Sbjct: 71  KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+  ++  +L+ +D+D VD    Y++ + EP V PS++PNLL NG+ GIAVG+AT+IP 
Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA IDN EI I++L+E+I GPD PTGGI++  + S+  +Y  G G    R
Sbjct: 191 HNLKEVTDGVLAYIDNNEIDIKELMEHIKGPDLPTGGILI-GKNSLRSAYESGVGKVAYR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +E++  G   I +TE PY+  K++L++ I+E+   +R    + L+ DIRDES  + 
Sbjct: 250 AKTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRRHSKALELISDIRDESDRNG 309

Query: 310 RIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    +S D    + +++ +F  ++++     NM  L+    P+ M L  +++ ++ 
Sbjct: 310 IRAVIELKKSADEDSANKILKYLFKKTELQCNISFNMVALAD-GKPETMSLKDMIRHYVN 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSL 423
           H++E++ RRS   ++   +R  I++G + A   +DE+IAIIR+          ++ +F+ 
Sbjct: 369 HQKEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIAIIRSSKSKKDASNNLIEKFAF 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T  Q  AIL L L  L  LE    + E   L    ++++ +L++ K+    I  E++E+ 
Sbjct: 429 TAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIKRLEKILSNEKELLKVIKFELKEIS 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538
           + +        R+T   E   A      + +I  E + + +S  G+I+ +   +      
Sbjct: 489 DKYGDE-----RKTNIIE-DDAKSKIDIEELIIVEEVMITLSKDGFIKRIPVKNYIRSNS 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ------- 591
           +   + ++EGD L+  + ++T D +L+ +  G  Y +   N+   +   +  +       
Sbjct: 543 NPEDIEYREGDKLEYLISSNTRDSLLIFTDKGFMYQVKGINIPELKWKEKGERLDTIIKS 602

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK-TFLKVSSEEKM 650
           L ++     ++++   ++       ++  G        +    T  GK   LK+  ++ +
Sbjct: 603 LNLEDEKIVEVISVDNFNPNKIFRFITKSGGIKESSLDKFE--TSYGKLQALKLRDKDAL 660

Query: 651 KLVVKVTGDH 660
             V     + 
Sbjct: 661 LNVKLRDREE 670



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 75/245 (30%), Gaps = 27/245 (11%)

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL-HAHTTDRILLLSTDGKAYTLPAGN- 579
           V  S             D + L + +   + I     +++  +LL S  G  Y +P    
Sbjct: 716 VNESKEEEYFEFNIGINDKNILKYYKTSKVDINRTKINSSKTLLLFSNKGYIYKIPGFLL 775

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                G  +      +L   + I+       Y+    L   S KG       +E   +T+
Sbjct: 776 KNIMNGDIKLEVFTGELEKKEKIIRISSISSYNDNLALYSFSKKGLVKKTLLNEFKVDTQ 835

Query: 637 KGKTFL-KVS-SEEKMKLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             K F  K+   ++++  V    +T  ++ ++ +    + F ++ +  M +   GV   S
Sbjct: 836 --KQFFYKLKTEDDEVISVDINNITLGNLIIITKKGMAIRFPVENVNSMGKVASGVTGIS 893

Query: 692 YKDGGISDV-------------ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG- 737
            ++                                 +  +   +       L  R G G 
Sbjct: 894 LREEDEVIFGAYVSKYLDVNGNTVIISPRSQEISLISKANEKLNITVEDIKLQNRAGRGT 953

Query: 738 -SLVP 741
             ++ 
Sbjct: 954 NVILM 958


>gi|251780766|ref|ZP_04823686.1| DNA gyrase subunit A [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085081|gb|EES50971.1| DNA gyrase subunit A [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 969

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 211/670 (31%), Positives = 363/670 (54%), Gaps = 33/670 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L  A+ E YL YA+   KERA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++  LAQ F  R PLI G GN+G+IDGDSAAA RYTE
Sbjct: 71  KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+  ++  +L+ +D+D VD    Y++ + EP V PS++PNLL NG+ GIAVG+AT+IP 
Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA IDN EI I++L+E+I GPD PTGGI++  + S+  +Y  G G    R
Sbjct: 191 HNLKEVTDGVLAYIDNNEIDIKELMEHIKGPDLPTGGILI-GKNSLRSAYESGVGKVAYR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +E++  G   I +TE PY+  K++L++ I+E+   +R    + L+ DIRDES  + 
Sbjct: 250 AKTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRRHSKALELISDIRDESDRNG 309

Query: 310 RIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    +S D    + +++ +F  ++++     NM  L+    P+ M L  +++ ++ 
Sbjct: 310 IRAVIELKKSADEDSANKILKYLFKKTELQCNISFNMVALAD-GKPETMSLKNMIRHYVN 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSL 423
           H++E++ RRS   ++   +R  I++G + A   +DE+IA IR+          ++ +F+ 
Sbjct: 369 HQKEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIATIRSSKSKKDASNNLIEKFAF 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T  Q  AIL L L  L  LE    + E   L    ++++ +L++ K+    I  E++E+ 
Sbjct: 429 TAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIKRLEKILSNEKELLKVIKFELKEIS 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538
           + +        R+T   E   A      + +I  E + + +S  G+I+ +   +      
Sbjct: 489 DKYGDE-----RKTNIIE-DDAKSKIDIEELIIVEEVMITLSKDGFIKRIPVKNYIRSNS 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ------- 591
           +   + ++EGD L+  + ++T D +L+ +  G  Y +   N+   +   +  +       
Sbjct: 543 NPEDIEYREGDKLEYLISSNTRDSLLIFTDKGFMYQVKGINIPELKWKEKGERLDTIIKS 602

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK-TFLKVSSEEKM 650
           L ++     ++++   ++       ++  G        +    T  GK   LK+  ++ +
Sbjct: 603 LNLEDEKIVEVISVDNFNPNKIFRFITKSGGIKESSLDKFE--TSYGKLQALKLRDKDAL 660

Query: 651 KLVVKVTGDH 660
             V     + 
Sbjct: 661 LNVKLRDREE 670



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 75/245 (30%), Gaps = 27/245 (11%)

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL-HAHTTDRILLLSTDGKAYTLPAGN- 579
           V  S             D + L + +   + I     +++  +LL S  G  Y +P    
Sbjct: 716 VNESKEEEYFEFNIGINDKNILKYYKTSKVDINRTKINSSKTLLLFSNKGYIYKIPGFLL 775

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                G  +      +L   + I+       YD    L   S KG       +E   +T+
Sbjct: 776 KNIMNGDIKLEVFTGELEKKEKIIRISSISSYDDNLALYSFSKKGLVKKTLLNEFKLDTQ 835

Query: 637 KGKTFL-KVS-SEEKMKLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             K F  K+   ++++  V    +T  ++ ++ +    + F ++ +  M +   GV   S
Sbjct: 836 --KQFFYKLKTEDDEVISVDINNITLGNLIIITKKGMAIRFPVENVNSMGKVASGVTGIS 893

Query: 692 YKDGGISDV-------------ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG- 737
            ++                                 +  +   +       L  R G G 
Sbjct: 894 LREEDEVIFGAYVSKYLDVNGNTVIISPRSQEISLISKANEKLNITVEDIKLQNRAGRGT 953

Query: 738 -SLVP 741
             ++ 
Sbjct: 954 NVILM 958


>gi|28211415|ref|NP_782359.1| DNA topoisomerase IV subunit A [Clostridium tetani E88]
 gi|28203856|gb|AAO36296.1| DNA gyrase subunit A [Clostridium tetani E88]
          Length = 959

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 223/670 (33%), Positives = 362/670 (54%), Gaps = 31/670 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             + N+  + +  A+ E YL YA    K+RA+PD+RDG KPVHRRI++   ++       
Sbjct: 9   PKDNNIIEMPIEEAMPENYLPYAAEVAKDRALPDVRDGLKPVHRRILYGAYKLAAFPDKP 68

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGDSAAA RY
Sbjct: 69  YYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRMPLIDGHGNWGSIDGDSAAAMRY 128

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +L+ +D+D V+  D Y+  + EP V PS++PNLL NG  GIAVG+AT+I
Sbjct: 129 TEARLTPMALELLRDIDKDVVNMEDNYSSTEKEPEVLPSRYPNLLVNGAFGIAVGLATNI 188

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  LA IDN EI  ++L++YI GPD PTGGI++  + S++++Y  G G   
Sbjct: 189 PPHNLVEVIDGTLAYIDNNEIDTKELMKYIKGPDLPTGGILI-GKNSLLKAYENGIGKVS 247

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----IIAKRIPLLEDIRDESAE 307
           +RA+  +EE+ +G + IV+TE PY+  KS+L++ I+E+      ++ +  + DIRDES  
Sbjct: 248 LRAKTQIEEIEKGRFGIVITEFPYRKNKSKLLQNISEMTGEKRHSRALEYISDIRDESDR 307

Query: 308 DVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +    +    RS D    +  ++ ++  +DM+     NM  L     P+VM L  ++  +
Sbjct: 308 NGIRAVIEFKRSTDREIVEKTLKYLYKNTDMQINISFNMVAL-ANGKPEVMGLKTMIYHY 366

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRF 421
           + H++EV+ RRS   ++  + R  I++G + A   +DEII  IR     K     ++ +F
Sbjct: 367 VEHQKEVVRRRSEKELEIAENRFHIVEGFIKAIDIMDEIIKTIRASKSKKEASKNLIDKF 426

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           + T+ Q +AIL L L  L  LE    K E   L  + + +  +L   ++    I  E+ E
Sbjct: 427 NFTKVQSEAILELMLYRLTGLEVTSFKKEHKELEKKIKALKKILQHEEELLKVIKFELEE 486

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-----LKSH 536
           V+E +        +R T             + +I  E   + IS  G+ +          
Sbjct: 487 VREKYGD------KRKTLIIKDDEKAKIDIEDLIIDEETVITISKEGFCKRVSVKSYNRS 540

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           + D+  + ++EGD  K  L   T D +L+ +  G  Y+    N+   R     I+L   +
Sbjct: 541 NSDIEDIEYREGDYNKFLLEGSTKDNVLIFTNKGNMYSTKVINIPEKRWKDRGIRLDETI 600

Query: 597 N----HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
                + ++I+  +V   + +    + ++S+G        +   N  K    LK+  +E+
Sbjct: 601 KTIDLNEEEIIDIYVVSKFTTQNDFIFITSRGGIKKTSLDKFETNYSK-LMALKLREDEE 659

Query: 650 MKLVVKVTGD 659
           +  V  +  +
Sbjct: 660 VIDVKLMDKN 669



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/325 (11%), Positives = 92/325 (28%), Gaps = 18/325 (5%)

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q D I       ++K    + ++    L+A K + D  +   K        +  ++    
Sbjct: 622 QNDFIFITSRGGIKKTSLDKFETNYSKLMALKLREDEEVIDVKLMDKNREEKFLKLSTKM 681

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                +        + +            +K   +             + + + S +   
Sbjct: 682 GLDFTIEEPTINEEDRNILSNIFCSIGYKDKVIKSQFEDKNELAIFSLNVNKNGSIIKGN 741

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI-DLNHNQDIVTA 605
             +   I L   +  ++L+   +G+   +    L +  G    I  L+       +I+  
Sbjct: 742 RKNKSSINLEVDSNKKLLIFLKNGEVIKINCNMLQNLEGKAINIFDLLEKYEQKNEIINV 801

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLV---V 654
             +D      ++  ++  G        E       G  F+ +       E+++  V    
Sbjct: 802 LPFDYNDEDLEIYYLTKFGLVKKTLLKEFQ-----GDYFITIGYKFRHKEDEIITVDFGK 856

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + ++ E    + FS + I  + +   GV   + K                + + 
Sbjct: 857 AHEEKDIIIISEKGMCIRFSKNSINPVGKIASGVMGINLKKEDKVLYGFINTEIYKSIVL 916

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGS 738
           +     +            R G G+
Sbjct: 917 TFKEGKDEEIKLKDIISQNRAGKGN 941


>gi|153940964|ref|YP_001392049.1| DNA topoisomerase IV subunit A [Clostridium botulinum F str.
           Langeland]
 gi|170756301|ref|YP_001782377.1| DNA topoisomerase IV subunit A [Clostridium botulinum B1 str. Okra]
 gi|152936860|gb|ABS42358.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           F str. Langeland]
 gi|169121513|gb|ACA45349.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           B1 str. Okra]
 gi|295320062|gb|ADG00440.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           F str. 230613]
          Length = 956

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 215/667 (32%), Positives = 362/667 (54%), Gaps = 30/667 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       
Sbjct: 8   PKDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RY
Sbjct: 68  YYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFTTRMPLIDGHGNWGSQDGDSAAAMRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +++ +D+D V+  D Y+  + EP V P+KFPN+L NG  GIAVG+AT+I
Sbjct: 128 TEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  LA ID  EI+ ++LL YI GPD PTGG ++  ++S++ +Y  G G   
Sbjct: 188 PPHNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGG-VIIGKKSMLSAYETGEGRVT 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAE 307
           +RA+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  
Sbjct: 247 LRAKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDR 306

Query: 308 DVRIVLFPKNR---SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +    +    +       +  ++ ++  +D+++    NM  L+    P+ + L  +LK +
Sbjct: 307 NGIRAVIEFKKIATQDVVEKTLKYLYKKTDLQSNISFNMVALAD-GKPKTLGLKSMLKYY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR        +  ++ +F
Sbjct: 366 VEHQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           S T+ Q +AIL L L  L  LE    + E   L     K+  +L S K+    I  E+ E
Sbjct: 426 SFTDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIE 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-----LKSH 536
           VKE ++      +R+T+  E          + +I +E + + +SN G+ +          
Sbjct: 486 VKETYND-----KRKTSIIE-DDEKAKIDVEEIIVEEDVVLTLSNEGFTKRIALKSYNRS 539

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--- 593
           S ++  + ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L    
Sbjct: 540 SANVEDIEYREGDFNRFIIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEII 599

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             ++ ++ I+ AF    + +   +L ++  G        +   N  K    LK+   E +
Sbjct: 600 KTIDLSETIMEAFSIEDFTAQKDMLFITDSGYIKKTTLDKFNTNYTK-IMALKLKKGESL 658

Query: 651 KLVVKVT 657
                V 
Sbjct: 659 VKADLVD 665



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 106/349 (30%), Gaps = 11/349 (3%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DEII  I   +             +  +  I +     ++K    +  +    ++A K K
Sbjct: 596 DEIIKTIDLSETIMEAFSIEDFTAQKDMLFITDS--GYIKKTTLDKFNTNYTKIMALKLK 653

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR-ADKATLQQAMIEKEP 519
               L            +   +K     S ++        + +    K          E 
Sbjct: 654 KGESLVKADLVDRTREEKFFNIKTQKGLSFNIEEPSLEPVDRNIIGYKLFDILPNDSIEK 713

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +    +       +      L  +   + +   I+L   ++  ++L   +GKAY +PA  
Sbjct: 714 VDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDSSKILVLFDDEGKAYYIPAFM 773

Query: 580 LLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           L S +  G  I        +  + ++ F ++    +   S KG       SE+       
Sbjct: 774 LQSIKEEGINISAFTGDKISLLNAISTFRFEEDISIYFSSEKGLIKRTLLSEL-KIEGNS 832

Query: 639 KTFLKVS-SEEKMKLVVKVTGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
               K    E+K+  ++         + ++ E   ++ F  + +  M +   GV   S K
Sbjct: 833 TQVYKFKHKEDKLVSILIKEHGEQKNILIITEKAMVIRFKSEAVNPMGKMASGVTGISLK 892

Query: 694 D-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           D   +         +              +       +  R G+G+ + 
Sbjct: 893 DLDKVILASIIDENDTRKIKIKTKAKDKGTIEINKIKVQNRAGIGNSLM 941


>gi|187933441|ref|YP_001884983.1| DNA topoisomerase IV subunit A [Clostridium botulinum B str. Eklund
           17B]
 gi|187721594|gb|ACD22815.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B]
          Length = 969

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 211/670 (31%), Positives = 363/670 (54%), Gaps = 33/670 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L  A+ E YL YA+   KERA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++  LAQ F  R PLI G GN+G+IDGDSAAA RYTE
Sbjct: 71  KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+  ++  +L+ +D+D VD    Y++ + EP V PS++PNLL NG+ GIAVG+AT+IP 
Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+    LA IDN EI I++L+EYI GPD PTGGI++  + S+  +Y  G G    R
Sbjct: 191 HNLKEVTNGVLAYIDNNEIDIKELMEYIKGPDLPTGGILI-GKNSLRSAYESGVGKVAYR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +E++  G   I +TE PY+  K++L++ I+E+   ++    + L+ DIRDES  + 
Sbjct: 250 AKTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRKHSKALELISDIRDESDRNG 309

Query: 310 RIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    +S D    + +++ +F  ++++     NM  L+    P+ M L  +++ ++ 
Sbjct: 310 IRAVIELKKSADEDSANKILKYLFKKTELQCNISFNMVALAD-GKPETMSLKDMIRHYVN 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSL 423
           H++E++ RRS   ++   +R  I++G + A   +DE+IA IR+          ++ +F+ 
Sbjct: 369 HQKEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIATIRSSKSKKDASNNLIEKFAF 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T  Q  AIL L L  L  LE    + E   L    ++++ +L++ K+    I  E++E+ 
Sbjct: 429 TAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIKRLEKILSNEKELLKVIKFELKEIS 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538
           + +        R+T   E     K  +++ +I  E + + +S  G+I+ +   +      
Sbjct: 489 DKYGDE-----RKTHIIEDDTKSKIDVEELII-VEEVMITLSKEGFIKRIPVKNYIRSNS 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL-- 596
           +   + ++EGD L+  + ++T D +L+ +  G  Y +   N+   +   +  +L   +  
Sbjct: 543 NPEDIEYREGDKLEYLISSNTRDSLLIFTNKGFMYQVKGINIPELKWKEKGERLDTIIKS 602

Query: 597 -----NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK-TFLKVSSEEKM 650
                    ++++   ++       ++  G        +    T  GK   LK+  ++ +
Sbjct: 603 LNLEEEKIVEVISVDSFNPNKIFRFITKSGGIKESSLDKFE--TSYGKLQALKLRDKDAL 660

Query: 651 KLVVKVTGDH 660
             V     + 
Sbjct: 661 LNVKLRDREE 670



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 78/243 (32%), Gaps = 25/243 (10%)

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL-HAHTTDRILLLSTDGKAYTLPAGN- 579
           V  S             D + L + +   + I     +++  +LL S  G  Y +P    
Sbjct: 716 VNESKEEEYFEFNIGINDKNILKYYKTSKVDINRTKINSSKTLLLFSNKGYIYKIPGFLL 775

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                G  +      DL   + I+       YD    L   S KG       +E   +T+
Sbjct: 776 KNIMNGDIKLEVFTGDLEKKEKIIRISSISSYDDDLALYSFSKKGLVKKTLLNEFSVDTQ 835

Query: 637 KGKTFL-KVS-SEEKMKLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             K F  K+   ++++  V    +T  ++ ++ +    + F ++ +  M +   GV   S
Sbjct: 836 --KQFFYKLKTEDDEVISVDINNITLGNLVIITKKGMAIRFPVENVNSMGKVASGVTGIS 893

Query: 692 YKDGGISDVIC-----FKICEGLTWIDSAGRSYNRSEN--------DLLGWLGKRGGVGS 738
            ++              ++      I    +  + +               L  R G G+
Sbjct: 894 LREEDEVIFGAYVSKYLEVNGNTVIISPRSQEISLTSKANDKVNITVEDIKLQNRAGRGT 953

Query: 739 LVP 741
            V 
Sbjct: 954 NVM 956


>gi|238913484|ref|ZP_04657321.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 501

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 212/506 (41%), Positives = 302/506 (59%), Gaps = 44/506 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWN 473
             E   LL +  ++  +L S  +   
Sbjct: 475 LDEYKELLEQIAELLHILGSADRLME 500


>gi|298252230|ref|ZP_06976033.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
 gi|297546822|gb|EFH80690.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
          Length = 840

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 208/782 (26%), Positives = 367/782 (46%), Gaps = 49/782 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            N+   VE  +        + + +  Y LS + +RA+PD RDG KPV RRI+  M E   
Sbjct: 6   ENTEKTVETGIIQEDFSVIMAQAFATYGLSVVTDRALPDARDGLKPVQRRILAGMREARY 65

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                  KSA +VG ++G  HPHGD SVYD+ VR+AQPF  RYPLI GQGN G+ DGD+ 
Sbjct: 66  LASRPTVKSAEVVGLILGNYHPHGDTSVYDAAVRMAQPFTMRYPLIEGQGNMGSEDGDAP 125

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTY--NEEDSEPVVFPSKFPNLLANGTSGIA 184
           AAYRYTE R++ +AE ++  ++ + V    TY  +    EP   P + P ++ N +SGIA
Sbjct: 126 AAYRYTEMRLSPLAEALMADMERETVPLHPTYKQDPRVQEPDYLPGRIPPVV-NPSSGIA 184

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VG++T+IP HN+ E+  A +AL+D P++++++L+ YI GPDF  GG I+   E I + + 
Sbjct: 185 VGLSTNIPPHNLGEVLRACIALLDRPDMTVDELMGYIPGPDFSQGGHII-GTEGIRDYFT 243

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-LEDIRD 303
            G+G   VRA   +EE    S  +VVT IP    + ++   I +   A+++   + D+RD
Sbjct: 244 TGKGRIIVRAEVRLEET-PRSRALVVTRIPP-TGRDKVKASIIKAFNARKLEGMMADLRD 301

Query: 304 ESAEDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV-----LSMGRVPQVMPL 357
           ES  +    ++    + +D    +E ++  +D++      M       +   R P+   +
Sbjct: 302 ESDTEKGTRIVLELRKDVDAAQTLEQLYRETDLQIAISFQMVFLFGSPMQAARQPKQTGM 361

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             +L  W AH+ ++L RR+ + ++    R+ +++GL+    + +EI+ I +  +      
Sbjct: 362 LELLNYWNAHQLDLLTRRAQYDLRKARERLHVIEGLITGAAHAEEIVKIFQQSEDRASAR 421

Query: 418 V---SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                R+SLTE Q D I ++ L  + KL+  + + E D L    E++++LL + +   + 
Sbjct: 422 RAIEERYSLTEIQSDVIASMTLSQVTKLDSGKYQRERDELQRRIEELENLLANRRALISL 481

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           +  E++++   F+      RR     E       T   ++ E+EP+TV  +  G +++L 
Sbjct: 482 LKKEMQQLMRQFADE----RRTYIDVEGQPHAPITHVASLHEREPLTVAFAFPGTLKALA 537

Query: 535 SHSVDLSALH-------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRG 585
             +      +        +  + L+  +   T D +L +S+ G+ + + +  L   +   
Sbjct: 538 PDTFKPKQKNGVLAYNPVRGDEQLRQVVATTTRDYLLCMSSTGRVFQVGSHRLPLVTRSA 597

Query: 586 HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            GE I+ L++L   ++IV       YD    ++  S  G       SE       G   +
Sbjct: 598 KGEVIRDLLELAPGEEIVAVVPIDAYDEDRYMVTFSRLGKVKKSPLSEYKTVDIDGAQDM 657

Query: 643 KVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           K++  + +   +   G     V  +  + L FS + +    R G+GV   +   GG   V
Sbjct: 658 KLAEGDSVVTALLSRGQGEYFVTTDYAQTLRFSDEALRAQGRVGQGVAAIALAKGGGVVV 717

Query: 701 ICF---------------KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                              + E  + +    +   +           R   G +  +   
Sbjct: 718 SASYYEPQGTVVDETTGEVLPELNSLLVVTEQGTLKKVPVSQYPQKGRATGGVVTTEIGD 777

Query: 746 RS 747
           + 
Sbjct: 778 KD 779



 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG-DHVAV 663
           V      LLVV+ +G    V  S+     R   G    ++  ++++ L + V   DH+ +
Sbjct: 736 VLPELNSLLVVTEQGTLKKVPVSQYPQKGRATGGVVTTEIGDKDRVLLSMLVNEQDHLLL 795

Query: 664 --VGENR----KLLIFSIDQIPEMSRGK-GV 687
              G N       L+  + ++    R K GV
Sbjct: 796 GWTGRNGEKGEHALVLPVSEVKAFPRVKQGV 826


>gi|255526780|ref|ZP_05393680.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|296187930|ref|ZP_06856322.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium carboxidivorans
           P7]
 gi|255509508|gb|EET85848.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|296047056|gb|EFG86498.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium carboxidivorans
           P7]
          Length = 959

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 234/761 (30%), Positives = 389/761 (51%), Gaps = 49/761 (6%)

Query: 6   ISNSNTL-VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +S   T+ V+ N+  VS+  A+ E YL YA+   K+RA+PD+RDG KPVHRRI++    +
Sbjct: 1   MSKKTTIPVDNNIIKVSIEEAMPENYLPYAVEVAKDRALPDVRDGLKPVHRRILYGSYML 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
                  + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGD
Sbjct: 61  KAFPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRKPLIDGHGNWGSQDGD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           +AAA RYTEAR+T +A  +++ +D+  VD  D Y+  + EP V P+K+PNLL NG  GIA
Sbjct: 121 NAAAMRYTEARLTPIAMELIRDIDKGVVDMVDNYSASEKEPEVLPAKYPNLLVNGAFGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VG+AT+IP HN++E+ +A +A ID  +I  ++L+EYI GPD PTGG I+  ++S++ +Y 
Sbjct: 181 VGLATNIPPHNLKEVIDATIAYIDKSDIDTKELMEYIKGPDLPTGG-IIIGKKSLLSAYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLED 300
            G G   +RA+  +E +  G   IV+TE PY+  K++L++ I+E+   K+    +  + D
Sbjct: 240 TGEGRVTLRAKTSIERLESGRLGIVITEFPYRRSKAKLLQTISEMTADKKHAKALESISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDP---DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           IRDES       +    +S D    D +++ +F  +DM+     NM  L+    PQ M L
Sbjct: 300 IRDESDRTGVRAVIEFKKSSDEETVDKVLKYLFKRTDMQCNISFNMVALAK-GKPQTMGL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
             IL  ++ H+++V+ RR+   M+   +R  I++G + A   +DEII +IR+        
Sbjct: 359 KTILYHYIEHQKDVVRRRTEREMEIASKRFHIVEGFIKAIGIMDEIIKVIRSSKSKKDAG 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++  F  TE Q +AIL L L  L  LE    + E   L  E ++++ +L+S K+    
Sbjct: 419 KNLIEGFGFTEVQSEAILELMLYRLTGLEIVAFEKEHKELEKEIKRLNKILSSEKELLKI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  E+ E++E +        R+TT  E     K  L++ ++E+  I + +SN G+I+ + 
Sbjct: 479 IKKELTEIREKYGD-----NRKTTIVENDDEAKINLEELIVEE-DIVITMSNEGFIKRIP 532

Query: 535 SHSVDLSA-----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
             + +        + ++EGD  K  ++++T   ++  +  G  Y     N+   +   + 
Sbjct: 533 LKTYNRINAEVGDIEYREGDFNKFLINSNTKSTLMFFTDKGNMYQSKGINIPEFKWKDKG 592

Query: 590 IQLLIDLNH----NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            ++   +       + IV  +    +  +  L+  + +G        +   N  K    L
Sbjct: 593 ERIESIIKTLDVSQESIVAVYSANDFMESQNLIFFTDRGIVKKTGIDKFNTNYTK-IMAL 651

Query: 643 KVSSEEKMKLVVKVTGDH----VAVVGENRKLLIF-------SIDQIPEMSRGKGVRLQS 691
           K+ +EE++  V+    D     + +  E    L F              M    G++L +
Sbjct: 652 KLKNEERVIKVIIAPKDRKETFINIETEKG--LKFVVEEPKIEESDRNIM----GLQLVN 705

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
                    I F           +   +   +      +  
Sbjct: 706 LSPKDRIISIDFTAEFVFKTFTLSINRFGIIKTSDRNRMSS 746



 Score = 93.7 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 60/475 (12%), Positives = 135/475 (28%), Gaps = 26/475 (5%)

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFMLSDMETR 338
           ++I+K    I  K     +    E+ ++ +I L       D  + M +        ++T 
Sbjct: 477 KIIKKELTEIREKYGDNRKTTIVENDDEAKINLEELIVEEDIVITMSNEGFIKRIPLKTY 536

Query: 339 FPLNMNVLSMGRVP-------QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
             +N  V  +                   L  +         +  +        + E ++
Sbjct: 537 NRINAEVGDIEYREGDFNKFLINSNTKSTLMFFTDKGNMYQSKGINIPEFKWKDKGERIE 596

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            ++       E I  + + +         F      V      +          +I +  
Sbjct: 597 SIIKTLDVSQESIVAVYSANDFMESQNLIFFTDRGIVKKTGIDKF----NTNYTKIMALK 652

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
                   K+       K+ +  I     E    F                 +    + +
Sbjct: 653 LKNEERVIKVIIAPKDRKETFINIE---TEKGLKFVVEEPKIEESDRNIMGLQLVNLSPK 709

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +I  +     +     +   +   +           S  +++   +  +IL+ S DG 
Sbjct: 710 DRIISIDFTAEFVFKTFTLSINRFGII--KTSDRNRMSSKPLSVSTDSKSKILIFSKDGN 767

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEES 629
            ++ PA  L +    G +I+ + D     +IV            +   + KG        
Sbjct: 768 VFSTPAFMLQNVGEQGISIKDIWDDIDKDNIVNIISVKDFDDGNIYFFTKKGMVKKTSLK 827

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           E   +      +   S ++ +  V     T + + +V +    + F  D I  M +   G
Sbjct: 828 EFEGDYFSTIAYKFKSDKDILINVQLSKNTEEEIIMVTKRAMCIRFQSDTINPMGKVASG 887

Query: 687 VRLQSYKDGGIS---DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           V   S K+       +++  K C    ++  + +S           +  R G G 
Sbjct: 888 VTGISLKEDDEVIYSEILSCKKCLNNKFVLKSSQSIAIDVAIDDIKIQNRAGRGK 942


>gi|168180822|ref|ZP_02615486.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           NCTC 2916]
 gi|226950183|ref|YP_002805274.1| DNA topoisomerase IV subunit A [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668336|gb|EDT80315.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           NCTC 2916]
 gi|226841361|gb|ACO84027.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 956

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 215/667 (32%), Positives = 361/667 (54%), Gaps = 30/667 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       
Sbjct: 8   PKDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RY
Sbjct: 68  YYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +++ +D+D V+  D Y+  + EP V P+K+PN+L NG  GIAVG+AT+I
Sbjct: 128 TEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKYPNILVNGAFGIAVGLATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  LA ID  EI+ ++LL YI GPD PTGG ++  ++S++ +Y  G G   
Sbjct: 188 PPHNLVEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGG-VIIGKKSMLSAYETGEGRVT 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAE 307
           +RA+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  
Sbjct: 247 LRAKTTIEKLENGRLSIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDR 306

Query: 308 DVRIVLFPKNR---SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +    +    +       +  ++ ++  +D+++    NM  L+    P+ + L  +LK +
Sbjct: 307 NGIRAVIEFKKIATEDIVEKTLKYLYKKTDLQSNISFNMVALAD-GKPKTLGLKSMLKYY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR        +  ++ +F
Sbjct: 366 VEHQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           S T+ Q +AIL L L  L  LE    + E   L     K+  +L S K+    I  E+ E
Sbjct: 426 SFTDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIE 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-----LKSH 536
           VKE ++      +RRT   E          + +I +E + + +SN G+ +          
Sbjct: 486 VKETYND-----KRRTAIIE-DDEKAKIDVEEIIVEEDVVLTLSNEGFTKRIALKSYNRS 539

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--- 593
           S ++  + ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L    
Sbjct: 540 SANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEII 599

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             ++ ++ I+ AF    + +   +L ++  G        +   N  K    LK+   E +
Sbjct: 600 KTIDLSETIIEAFSIEDFTAQKDMLFITDSGYIKKTTLDKFNTNYTK-IMALKLKKGESL 658

Query: 651 KLVVKVT 657
                V 
Sbjct: 659 VKSDLVD 665



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 107/349 (30%), Gaps = 11/349 (3%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DEII  I   +             +  +  I +     ++K    +  +    ++A K K
Sbjct: 596 DEIIKTIDLSETIIEAFSIEDFTAQKDMLFITDS--GYIKKTTLDKFNTNYTKIMALKLK 653

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR-ADKATLQQAMIEKEP 519
               L            +   +K     S ++        + +    K          + 
Sbjct: 654 KGESLVKSDLVDRTREEKFFNIKTQKGLSFNIEEPSLEPVDRNIIGYKLFDILPNDSIKK 713

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +    +       +      L  +   + +   I+L   ++  ++L   +GKAY +PA  
Sbjct: 714 VDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDSSKTLVLFDDEGKAYYIPAFM 773

Query: 580 LLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           L S +  G  I        +  + ++ F ++    +   S KG        E+       
Sbjct: 774 LQSIKEEGVNISAFTGDKISLLNAISTFRFEEDISIYFSSEKGLIKRTLLGEL-KIEGNS 832

Query: 639 KTFLKVS-SEEKMKLVVKVTGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
               K    ++K+  ++    +    + ++ E   ++ F  + +  M +   GV   S K
Sbjct: 833 TQVYKFKHKDDKLVSILIKEHEEQKNILIITEKAMVIRFKSEAVNPMGKMASGVTGISLK 892

Query: 694 D-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           D   +   +     +              +       +  R G+G+ + 
Sbjct: 893 DLDKVILALIIDENDTRKIKIKTKAKDKGTIEINKIKVQNRAGIGNSLM 941


>gi|150019135|ref|YP_001311389.1| DNA topoisomerase IV subunit A [Clostridium beijerinckii NCIMB
           8052]
 gi|149905600|gb|ABR36433.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium beijerinckii NCIMB
           8052]
          Length = 970

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 219/670 (32%), Positives = 363/670 (54%), Gaps = 33/670 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           + +    + N+  + L  A+ E YL YA+   K+RA+PD+RDG KPVHRRI++    +  
Sbjct: 5   NENIIPKDNNIIGIPLEEAMPENYLPYAIEVAKDRALPDVRDGLKPVHRRILYGSYMLKA 64

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + KSARIVG+++GK HPHGD SVY+S+V LAQ F  R PLI G GN+G+IDGD A
Sbjct: 65  FPDRPYYKSARIVGDILGKYHPHGDSSVYESMVILAQDFSTRAPLIEGHGNWGSIDGDGA 124

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR++ +A  +L+ +++D V+    Y++ + EP V PS++PNLL NG  GIAVG
Sbjct: 125 AAMRYTEARLSPIAMEMLRDIEKDTVEMVPNYSDSEMEPKVLPSRYPNLLVNGAFGIAVG 184

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           +AT+IP HN+ E+ E  LA IDN EI+  +L++YI GPD PTGGI++   +SI+ +Y  G
Sbjct: 185 LATNIPPHNLGEVTEGVLAYIDNNEITTSELMKYIKGPDLPTGGILI-GEKSILSAYETG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIR 302
            G    RA+  +E++  G   I++TE PY+  KSR+++ I+E+   KR    +  + DIR
Sbjct: 244 EGKVAYRAKTSIEKLENGRIGIIITEFPYRRNKSRILQTISEMTGDKRHAKALESITDIR 303

Query: 303 DESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DES       +    ++ D    D +++ +F  +D++     NM  L     P+ M L  
Sbjct: 304 DESDRSGIRAVIELKKNADEDVADKVLKYLFKKTDLQCNISFNMVAL-ANGKPETMSLKA 362

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
           I++ ++ H++E++ RR+   +    +R  I++G + A   +DE+IA IR+          
Sbjct: 363 IIRYYVEHQKEIITRRTQKELDVAKKRHHIVEGFIKAISVLDEVIATIRSSKSKKDASEN 422

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++S+F  +E Q  AIL L L  L  LE    + E   L    +K++ +L+S K+    + 
Sbjct: 423 LISKFGFSEAQAQAILELMLYRLTGLEIEIFEKEYAQLEKLIKKLEKILSSEKELLKVVK 482

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E++E+ + +        RRT        +     + +I  E + V IS  G+++ +   
Sbjct: 483 SELKEISDKYGN-----DRRTEII-HDDNESKIDVEELIIVEEVMVTISKDGFVKRIPLK 536

Query: 537 SV-----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           +      +   + ++EGDSLK  ++++T D +L+ +  G  Y     N+   R   +  +
Sbjct: 537 NYTRSSSNPEDIEYREGDSLKYLINSNTKDTLLVFTDKGFMYQTKGINIPEMRWKEKGDR 596

Query: 592 LLIDLN----HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK-TFLK 643
           L   +      N+ I+ A     ++ +     ++  G   +    +    T  GK   LK
Sbjct: 597 LDEIIKSLNLDNEKIIAAISIDNFNPSKAFRFITKHGGIKLSSLDKF--QTAYGKLQALK 654

Query: 644 VSSEEKMKLV 653
           +   +++  V
Sbjct: 655 LRDGDELIDV 664



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 59/202 (29%), Gaps = 30/202 (14%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLI-DLNHNQDIVTAFV---YDSTCKLLVVSSK 620
           + S  G  Y +P   + +       ++  I  +   + I++      YD    +   + K
Sbjct: 761 IFSNRGYVYKIPVFLMRNVLNKEINVEAFIGKMEKGEKIISLISIDSYDEDLGVYTFTKK 820

Query: 621 GNAFIVEESEIIANTRKG---KTFL-KVS-SEEKMKLVVK--VTGDHVAVVGENRKLLIF 673
           G        E       G   K    K    ++++  V    +   H+ ++ +    + F
Sbjct: 821 GMVKKTLLKEFE-----GDFLKQACYKFKFEDDEVVSVEMNQIKIGHLIMITKKGMAIRF 875

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGIS-------------DVICFKICEGLTWIDSAGRSY 719
            ++ +  M +   GV   S +D                 D       +       +    
Sbjct: 876 PVENVNIMGKIASGVTGISLRDEDQVIFGKYHSNYKKSDDNTVMLSSDDTKITLVSKGKE 935

Query: 720 NRSENDLLGWLGKRGGVGSLVP 741
               +     L  R G G+ + 
Sbjct: 936 RSVMDISDIKLQNRAGRGTSIM 957


>gi|310287731|ref|YP_003938989.1| DNA gyrase subunit A [Bifidobacterium bifidum S17]
 gi|309251667|gb|ADO53415.1| DNA gyrase subunit A [Bifidobacterium bifidum S17]
          Length = 890

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 218/848 (25%), Positives = 353/848 (41%), Gaps = 113/848 (13%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRII+ M EM L  
Sbjct: 12  DPRQVQEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGEMNLTP 71

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R  L+ G GNFG++D D  AA
Sbjct: 72  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLALVDGHGNFGSLD-DGPAA 130

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 131 SRYTEARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMA 190

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P GGII+  R  I  +Y  GRG
Sbjct: 191 TNMATHNLGEVVAAAKHLMAHPDATLEELMRYVPGPDWPGGGIIIG-RNGIRGAYETGRG 249

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               R+    E V      IVVTE+P+ V   R++E+I+E +  +++  +    D +   
Sbjct: 250 TLTTRSMTHFENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRH 309

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP+ ++  +F  + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 310 NGTRLVIEIKTGFDPNAVLAQLFRHTPLQDNFTMNNVALVD-GRPHTMGLKEMLQVWIDH 368

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLT 424
           RR V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR  D            F L 
Sbjct: 369 RRIVVRRRSEFRRRKALERLHLVEGLLLAMIDIDEVIQVIRTSDDADAAKSRLIAVFDLD 428

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q   IL+LRLR L ++   ++++E D+L    E+++ +L S ++    +  E+ +   
Sbjct: 429 DVQAQYILDLRLRRLTRMSRIELEAERDDLKRRIEELERILASAQELDRVVVDEMDQAVA 488

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAM------------------------------ 514
            +        RRT   + +     T                                   
Sbjct: 489 EYGTP-----RRTVLLDEAEDGTLTPVTPHGDDSVNAAAMKAAAAATTLSSAEADVTAAA 543

Query: 515 ----------------IEKEPITVVISNRGWIRSLKSHSVDLSALH-----FKEGDSLKI 553
                           I+ EP TV++S  G I      ++D            + D +  
Sbjct: 544 AARKAGEDAAAVAALQIDDEPCTVMLSASGTIARSTPAALDAWESRSTSDERTKDDHIVS 603

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLL-------------SGRGHGEAIQLLIDLNHNQ 600
                T     L+++ G+        L                      +    D    +
Sbjct: 604 IFRTTTRSSYGLVTSAGRLVLAHVVELPALAASPQTNVAGGIPADELIGMTESTDPIPGE 663

Query: 601 DIVTAFVYDSTCK-------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            +V A   D           L + +  G             T    + + +   + +   
Sbjct: 664 HVVAAIPMDQRDDDGPTPAPLAIGTRAGVVKRWNRE--APTTMDSWSVIDLKDGDSVLFA 721

Query: 654 V-KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG---------------- 695
                 D +  +  +  LL F    +    R   G+      +G                
Sbjct: 722 ADAADEDRLVFIASDSSLLTFDAGNVRPQGRTAGGMAGIRLAEGCTAITFNVVPAGKIAW 781

Query: 696 ----------GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                       S  +   +      +        +     +     RG  G    +   
Sbjct: 782 TYEEGDNGMFSASGAVVLTVAGDKDALPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFLK 841

Query: 746 RSGKFLSS 753
                + +
Sbjct: 842 GQNTLIFA 849


>gi|170761292|ref|YP_001788087.1| DNA topoisomerase IV subunit A [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408281|gb|ACA56692.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 956

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 219/689 (31%), Positives = 372/689 (53%), Gaps = 32/689 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       
Sbjct: 8   PKDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RY
Sbjct: 68  YYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +++ +D+D V+  D Y+  + EP V P+KFPN+L NG  GIAVG+AT+I
Sbjct: 128 TEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +  LA ID  EI+ ++LL YI GPD PTGG ++  ++S++ +Y  G G   
Sbjct: 188 PPHNLEEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGG-VIIGKKSMLSAYETGEGRVT 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAE 307
           +RA+  +E++  G   IV+TE P++  K+RL++ I+E+   K+    +  + DIRDES  
Sbjct: 247 LRAKTTIEKLENGRLAIVITEFPFRKNKARLLQFISEMTADKKHSKALENITDIRDESDR 306

Query: 308 DVRIVLFPKNR---SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +    +    +       +  ++ ++  +D+++    NM  L+    P+ + L  +L+ +
Sbjct: 307 NGIRAVIEFKKIATQDVIEKTLKYLYKKTDLQSNISFNMVALAD-GKPKTLGLKAMLEYY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR        +  ++ +F
Sbjct: 366 VEHQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMQKF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           S T+ Q +AIL L L  L  LE    + E   L     K+  +LNS K+    I  E+ E
Sbjct: 426 SFTDIQAEAILELMLYKLTGLEIVAFEKEYKELERLINKLKKILNSEKELLKVIKKELIE 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-----LKSH 536
           VKE ++      +RRT+  E          + +I +E + + +SN  + +          
Sbjct: 486 VKETYND-----KRRTSIIE-DDEKAKIDIEEIIVEEDVVLTLSNESFAKRISLKSYNRS 539

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--- 593
           S ++  + ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L    
Sbjct: 540 SANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEII 599

Query: 594 IDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             ++ ++ I+ AF  +       +L ++  G        +   N  K    LK+   E +
Sbjct: 600 KTIDLSETIIEAFSIEDFIAQKDMLFITDSGYIKKTTLDKFNTNYTK-IMVLKLKKGESL 658

Query: 651 KLVVKVT--GDHVAVVGENRKLLIFSIDQ 677
                V    +   +  +  K L F++++
Sbjct: 659 VKADLVDRTREEKFLNIKTHKGLSFNVEE 687



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 107/349 (30%), Gaps = 11/349 (3%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DEII  I   +           + +  +  I +     ++K    +  +    ++  K K
Sbjct: 596 DEIIKTIDLSETIIEAFSIEDFIAQKDMLFITDS--GYIKKTTLDKFNTNYTKIMVLKLK 653

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR-ADKATLQQAMIEKEP 519
               L            +   +K     S ++        + +    K          + 
Sbjct: 654 KGESLVKADLVDRTREEKFLNIKTHKGLSFNVEEPSLQPVDRNIIGYKLFDILPNDSIKK 713

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +    +       +      L  +   + +   I+L   ++  ++L   +GKAY +PA  
Sbjct: 714 VDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDSSKTLVLFDDEGKAYYIPAFM 773

Query: 580 LLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           L   +  G  I +      +  + ++ F ++    +   S KG       SE+       
Sbjct: 774 LQGIKEGGINISVFTGDKISLLNAISTFRFEEDISIYFSSEKGLIKRTLLSEL-KIEGNS 832

Query: 639 KTFLKVS-SEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
               K    E+K+  ++    +    + ++ E   ++ F  + +  M +   GV   S K
Sbjct: 833 TQVYKFKHKEDKLVSILIKEHEEQKDILIITEKAMVIRFKSEAVNPMGKMASGVTGISLK 892

Query: 694 D-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           D   +         +              +       +  R G+G+ + 
Sbjct: 893 DLDKVILASIIDENDTRKIKIKTKAKDKGTIEINKIKVQNRAGIGNSLM 941


>gi|115371945|ref|ZP_01459257.1| DNA gyrase/topoisomerase IV, A subunit [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370910|gb|EAU69833.1| DNA gyrase/topoisomerase IV, A subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 482

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 177/417 (42%), Positives = 269/417 (64%), Gaps = 4/417 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   +   YL Y++S I  RA+PD+RDG KPVHRR+++AM ++G     A+KKS
Sbjct: 23  ELIPVNIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHDLGNTHNRAYKKS 82

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD SVY+++VRLAQ +  RY L+ GQGNFG++DGDS AA RYTE R
Sbjct: 83  ARVVGDVIGKYHPHGDASVYEAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVR 142

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++AE +L  +D++ VDF   Y++  +EP+V P+KFPNLL NG++GIAVGM T+IP HN
Sbjct: 143 MDRLAEELLADIDKETVDFGPNYDDSLTEPLVMPTKFPNLLVNGSTGIAVGMTTNIPPHN 202

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  L LID+P+ ++  L+++I GPDFPT   I   RE I  +Y  GRG   +RAR
Sbjct: 203 MGEVIDGTLHLIDHPQATVRDLMQFIPGPDFPTAATIT-GREGIARAYETGRGQITIRAR 261

Query: 256 WCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +E   +G    I++TEIPYQV K+RLIEKIA+L+  K++  + DIRDES      +  
Sbjct: 262 TEIETSKKGDREAIIITEIPYQVNKARLIEKIADLVREKKLEGISDIRDESDRQGMRIFI 321

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ ++F ++ +ET F   + +   G  P+ + L  +L  +++HRR+V+ R
Sbjct: 322 ELKRDAISGVVLNNLFSMTPLETTFGA-VMLAIDGGQPRTLNLKELLDRFISHRRDVITR 380

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-VMVSRFSLTENQVDA 430
           R+ + ++    R+ I++GLL+A   ID ++++IR    P          L+    + 
Sbjct: 381 RTRYELRKALARLHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMHILSSELYEH 437


>gi|157060392|gb|ABV03202.1| GyrA [Chlamydia trachomatis]
 gi|157060394|gb|ABV03203.1| GyrA [Chlamydia trachomatis]
          Length = 485

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 198/482 (41%), Positives = 288/482 (59%), Gaps = 6/482 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGG I+   E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDK-NLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR     +            +E Q  
Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TD 491
             
Sbjct: 483 RR 484


>gi|148380729|ref|YP_001255270.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. ATCC 3502]
 gi|153931559|ref|YP_001385013.1| DNA topoisomerase IV subunit A [Clostridium botulinum A str. ATCC
           19397]
 gi|153937418|ref|YP_001388483.1| DNA topoisomerase IV subunit A [Clostridium botulinum A str. Hall]
 gi|148290213|emb|CAL84332.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502]
 gi|152927603|gb|ABS33103.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933332|gb|ABS38831.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. Hall]
          Length = 956

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 216/667 (32%), Positives = 364/667 (54%), Gaps = 30/667 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       
Sbjct: 8   PKDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RY
Sbjct: 68  YYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +++ +D+D V+  D Y+  + EP V P+KFPN+L NG  GIAVG+AT+I
Sbjct: 128 TEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +  LA ID  EI+ ++LL YI GPD PTGG ++  ++S++ +Y  G G   
Sbjct: 188 PPHNLEEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGG-VIIGKKSMLSAYETGEGRVT 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAE 307
           +RA+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  
Sbjct: 247 LRAKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDR 306

Query: 308 DVRIVLFPKNR---SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +    +    +       +  ++ ++  +D+++    NM  L+    P+ + L  +L+ +
Sbjct: 307 NGIRAVIEFKKIATQDVIEKTLKYLYKKTDLQSNISFNMVALAD-GKPKTLGLKAMLEYY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR        +  ++ +F
Sbjct: 366 VEHQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMEKF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           S T+ Q +AIL L L  L  LE    + E   L     K+  +LNS K+    I  E+ E
Sbjct: 426 SFTDVQAEAILELMLYKLTGLEIVAFEKEYKELEKLINKLKKILNSEKELLKVIKKELIE 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-----LKSH 536
           VKE ++      +RRT+  E          + +I +E + + +SN G+ +          
Sbjct: 486 VKETYND-----KRRTSIIE-DDEKAKIDIEEIIVEEDVVLTLSNEGFAKRISLKSYNRS 539

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--- 593
           S ++  + ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L    
Sbjct: 540 SANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVRLDEII 599

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             ++ ++ I+ AF    + +   +L ++  G        +   N  K    LK+   E +
Sbjct: 600 KTIDLSETIMEAFSIEDFTAQKDMLFITDSGYIKKTTLDKFNTNYTK-IMALKLKKGEFL 658

Query: 651 KLVVKVT 657
                V 
Sbjct: 659 VKADLVD 665



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 106/349 (30%), Gaps = 11/349 (3%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DEII  I   +             +  +  I +     ++K    +  +    ++A K K
Sbjct: 596 DEIIKTIDLSETIMEAFSIEDFTAQKDMLFITDS--GYIKKTTLDKFNTNYTKIMALKLK 653

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR-ADKATLQQAMIEKEP 519
               L            +   +K     S ++        + +    K          E 
Sbjct: 654 KGEFLVKADLVDRTREEKFFNIKTQKGLSFNIEEPSLEPVDRNIIGYKLFDILPNDSIEK 713

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +    +       +      L  +   + +   I+L   ++  ++L   +GKAY +PA  
Sbjct: 714 VDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDSSKILVLFDDEGKAYYIPAFM 773

Query: 580 LLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           L S +  G  I        +  + ++ F ++    +   S KG       SE+       
Sbjct: 774 LQSIKEEGINISAFTGDKISLLNAISTFRFEEDISIYFSSEKGLIKRTLLSEL-KIEGNS 832

Query: 639 KTFLKVS-SEEKMKLVVKVTGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
               K    E+K+  ++         + ++ E   ++ F  + +  M +   GV   S K
Sbjct: 833 TQVYKFKHKEDKLVSILIKEHGEQKNILIITEKAMVIRFKSEAVNPMGKMASGVTGISLK 892

Query: 694 D-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           D   +         +              +       +  R G+G+ + 
Sbjct: 893 DLDKVILASIIDENDTRKIKIKTKAKDKGTIEINKIKVQNRAGIGNSLM 941


>gi|123967541|ref|YP_001008399.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
 gi|123197651|gb|ABM69292.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
          Length = 813

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 207/739 (28%), Positives = 359/739 (48%), Gaps = 30/739 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N  ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRII AM E+GL     
Sbjct: 1   MDKKNFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRIIFAMYELGLTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VYD+LV+L Q F  +YP + G GNFG+ID D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYDALVKLVQNFSTKYPTLDGHGNFGSIDNDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A    L+ +  + V+F + ++    EP V P++ P LL NG++GIAVGMAT+
Sbjct: 121 TETRLAPIAHKGFLEEIGSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSTGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  + L+ N +IS +KL   I GPDFPTGG ++ SR  I E Y+ G+G  
Sbjct: 181 IPPHNLGEIVDGLVTLVKNKDISDKKLFNIIKGPDFPTGGELIYSRA-IEELYQTGKGSI 239

Query: 251 RVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R     EEV           I++ E+PYQ+ K+  IEK+AEL+ A +I  + DIRDES
Sbjct: 240 TIRGVINTEEVNLGKGKHKKNAIIIKELPYQINKAGWIEKLAELVNAGKIIGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    +  + +L++ +++  + ++T F      L     P  + L   L  +L
Sbjct: 300 DRDGMRIVIELKKDSNSELVISNLYKKTTLQTNFGAIFLALIK-GKPVQLNLKKYLNYFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
             R E + +R+ + ++    ++EI +GL  A  +I ++IAII   +           +F 
Sbjct: 359 EFREETIRKRTFYFLKNTLDKLEISEGLSKATKDIKKVIAIIEESENSVQARSKLVEKFF 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +++L++ L+ L  LE+ QI +E+ NL  +K     LLN  +     +  E+  +
Sbjct: 419 LSEKQANSVLDMPLKKLTNLEKNQIDNEIKNLAEKKNYFQKLLNERELLLKLLIEELLIL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---------L 533
           K+ ++       R+T   +    ++          E      +                 
Sbjct: 479 KKKYN-----VIRKTKIIKNLNQNEELETLNNQILEDFINKKTKLYIDNRLYLKRMILSN 533

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S +         +  K   +     +++ ++  G+ + +   + ++     +   L 
Sbjct: 534 YKKSFEGVNKIIDNKNIQKFICNIEKNTKLIGITNTGRVFNIDWESSINKDYKLDNKILG 593

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
                      +   ++   L +++S G    V   + +  + +  T  K+ +  K    
Sbjct: 594 NIHPSEIINFHSIKKETRNYLCILNSDGRFKKVLFDKDMIKSNRSFTITKLKNNLKTVDS 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQS-YKDGGISDVICFKICEG 708
                  ++ ++    ++  F++    +   S+  KG+ +        I     F   E 
Sbjct: 654 FISNESKNLIILTSIGRIFKFNLSNKFLTATSKQSKGLIIAKLLPTEKIVSCCTFHDGEN 713

Query: 709 LTWIDSAGRSYNRSENDLL 727
           +  I   G+ +  + N++ 
Sbjct: 714 IFLISKQGKIFCINSNEIY 732


>gi|224283379|ref|ZP_03646701.1| DNA topoisomerase IV subunit A [Bifidobacterium bifidum NCIMB
           41171]
 gi|311064619|ref|YP_003971344.1| DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|313140533|ref|ZP_07802726.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
 gi|310866938|gb|ADP36307.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|313133043|gb|EFR50660.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
          Length = 890

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 216/843 (25%), Positives = 351/843 (41%), Gaps = 103/843 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRII+ M EM L  
Sbjct: 12  DPRQVQEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGEMNLTP 71

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R  L+ G GNFG++D D  AA
Sbjct: 72  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLALVDGHGNFGSLD-DGPAA 130

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 131 SRYTEARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMA 190

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P GGII+  R  I E+Y  GRG
Sbjct: 191 TNMATHNLGEVVAAAKHLMAHPDATLEELMRYVPGPDWPGGGIIIG-RNGIREAYETGRG 249

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               R+    E V      IVVTE+P+ V   R++E+I+E +  +++  +    D +   
Sbjct: 250 TLTTRSMTHFENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRH 309

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP+ ++  +F  + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 310 NGTRLVIEIKTGFDPNAVLAQLFRHTPLQDNFTMNNVALVD-GRPHTMGLKEMLQVWIDH 368

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLT 424
           RR V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR  D            F L 
Sbjct: 369 RRIVVRRRSEFRRRKALERLHLVEGLLLAMIDIDEVIQVIRTSDDADAAKSRLIAVFDLD 428

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q   IL+LRLR L ++   ++++E D+L    E+++ +L S ++    +  E+ +   
Sbjct: 429 DVQAQYILDLRLRRLTRMSRIELEAERDDLKRRIEELERILASAQELDRVVVDEMDQAVA 488

Query: 485 IFSKSTDL-----------------------------------------GRRRTTFCEVS 503
            +                                                         +
Sbjct: 489 EYGTPRRTVLLDEAEDGTLTPVTPHGDDSVNAAAMKAAAAAATLSSAEADVAAAAAARKA 548

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-----FKEGDSLKIALHAH 558
             D A +    I+ EP TV++   G I      ++D            + D +       
Sbjct: 549 GEDAAAVAALQIDDEPCTVMLGASGTIARSTPAALDAWESRSTSDERTKDDHIVSIFRTT 608

Query: 559 TTDRILLLSTDGKAYTLPAGNLL-------------SGRGHGEAIQLLIDLNHNQDIVTA 605
           T     L+++ G+        L                      +    D    + +V A
Sbjct: 609 TRSSYGLVTSAGRLVLAHVVELPALAASPQTNVAGGIPADELIGMTESTDPIPGEHVVAA 668

Query: 606 FVYDSTCK-------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV-KVT 657
              D           L + +  G             T    + + +   + +        
Sbjct: 669 IPMDQRDDDGPTPAPLAIGTRAGVVKRWNRE--APTTMDSWSVIDLKDGDSVLFAADAAD 726

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG--------------------- 695
            D +  +  +  LL F    +    R   G+      +G                     
Sbjct: 727 EDRLVFIASDSSLLTFDAGNVRPQGRTAGGMAGIRLAEGCTAITFNVVPAGKIAWTYEEG 786

Query: 696 -----GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  S  +   +      +        +     +     RG  G    +        
Sbjct: 787 DNGMFSASGAVVLTVAGDKDALPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFLKGQNTL 846

Query: 751 LSS 753
           + +
Sbjct: 847 IFA 849


>gi|317482444|ref|ZP_07941461.1| topoisomerase IV [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916104|gb|EFV37509.1| topoisomerase IV [Bifidobacterium sp. 12_1_47BFAA]
          Length = 909

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/784 (28%), Positives = 359/784 (45%), Gaps = 61/784 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L  
Sbjct: 13  DPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG
Sbjct: 192 TNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   
Sbjct: 251 TLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP  ++  +F  + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 311 NGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALV-EGRPHTMGLKEMLQVWVDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLT 424
           RR V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR  D        ++  F L 
Sbjct: 370 RRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E   
Sbjct: 430 EVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVA 489

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT   +       T   A        V  S    +++  + S   + + 
Sbjct: 490 KWGSP-----RRTVLLDADPDGTLTPVVAQGA-GASGVSKSALEAVKAATTISSAEADVA 543

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT----LPAGNLLSGRGHGEAIQLLIDLNHNQ 600
                + K    +  T  + +             L A    S      A     +   + 
Sbjct: 544 AAAAAAKKTGEQSTLTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSTSDERLRDD 603

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVV--- 654
            I T F   +     +V+S G   +    ++ A        L +      +++  +    
Sbjct: 604 QITTIFETSTRATYGLVTSAGRLVLAHVVDLPALPAT--ATLSLKGGVQADELIGMTEST 661

Query: 655 -KVTGDHVAVVG-----ENRKLLIFSIDQ---------IPEMSRGK--GVR--------- 688
             + G+ V          + K       +         +P ++ G   GV          
Sbjct: 662 DPIRGERVITAIAMEQPTSGKTSAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAPT 721

Query: 689 ------LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR--GGV-GSL 739
                 +   KDG           +      S+  S   +          R  GG+ G  
Sbjct: 722 TMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSL-LTFEAKNVRPQGRTAGGMAGIK 780

Query: 740 VPKG 743
           + KG
Sbjct: 781 LAKG 784



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 12/168 (7%), Positives = 32/168 (19%), Gaps = 30/168 (17%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLI 672
           L + +  G             T      + +   +++        D  +  +  +  LL 
Sbjct: 703 LAIGTRNGVIKRWNRE--APTTMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLT 760

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGIS--------------------------DVICFKI 705
           F    +    R   G+       G                               +   +
Sbjct: 761 FEAKNVRPQGRTAGGMAGIKLAKGARVAAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTV 820

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +        +     +     R   G    +        + +
Sbjct: 821 AGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTLILA 868


>gi|157060390|gb|ABV03201.1| GyrA [Chlamydia trachomatis]
          Length = 492

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 201/490 (41%), Positives = 291/490 (59%), Gaps = 11/490 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGG I+   E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDK-NLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR     +            +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTF 499
                RRT  
Sbjct: 483 -----RRTKI 487


>gi|157060370|gb|ABV03191.1| GyrA [Chlamydia trachomatis]
          Length = 494

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 201/490 (41%), Positives = 291/490 (59%), Gaps = 11/490 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGG I+   E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDK-NLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR     +            +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTF 499
                RRT  
Sbjct: 483 -----RRTKI 487


>gi|213691857|ref|YP_002322443.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213523318|gb|ACJ52065.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457952|dbj|BAJ68573.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 909

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 225/791 (28%), Positives = 359/791 (45%), Gaps = 60/791 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L  
Sbjct: 13  DPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DHPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG
Sbjct: 192 TNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
            F  RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   
Sbjct: 251 TFTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP  ++  +F  + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 311 NGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALV-EGRPHTMGLKEMLQVWVDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLT 424
           RR V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR  D        ++  F L 
Sbjct: 370 RRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E   
Sbjct: 430 EVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVA 489

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT   +       T   A        V  S    +++  + S   + + 
Sbjct: 490 KWGSP-----RRTVLLDADPDGTLTPVVAQGA-GASGVSKSALEAVKAATTISSAEADVA 543

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT----LPAGNLLSGRGHGEAIQLLIDLNHNQ 600
                + K    +  T  + +             L A    S      A     +   + 
Sbjct: 544 AAAAAAKKTGEQSALTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSASDERLRDD 603

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVV--- 654
            I T F   +     +V+S G   +    ++ A        L +      +++  +    
Sbjct: 604 QITTIFETSTRATYGLVTSAGRLVLAHVVDLPALPAA--ATLSLKGGVQADELIGMTEST 661

Query: 655 -KVTGDHVAVVG-----ENRKLLIFSIDQ---------IPEMSRGK--GVR--------- 688
             + G+ V          + K       +         +P ++ G   GV          
Sbjct: 662 DPIRGERVITAIAMEQPTSGKASAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAPT 721

Query: 689 ------LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 +   KDG           +      S+  S   +          R   G    K
Sbjct: 722 TMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSL-LTFEAKNVRPQGRTAGGMAGIK 780

Query: 743 GFPRSGKFLSS 753
                G  +++
Sbjct: 781 LAE--GARVAA 789



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 12/168 (7%), Positives = 33/168 (19%), Gaps = 30/168 (17%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLI 672
           L + +  G             T      + +   +++        D  +  +  +  LL 
Sbjct: 703 LAIGTRNGVIKRWNRE--APTTMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLT 760

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGIS--------------------------DVICFKI 705
           F    +    R   G+      +G                               +   +
Sbjct: 761 FEAKNVRPQGRTAGGMAGIKLAEGARVAAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTV 820

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +        +     +     R   G    +        + +
Sbjct: 821 AGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTLILA 868


>gi|193216449|ref|YP_001999691.1| topoiosmerase IV subunit A [Mycoplasma arthritidis 158L3-1]
 gi|193001772|gb|ACF06987.1| topoiosmerase IV subunit A [Mycoplasma arthritidis 158L3-1]
          Length = 949

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 199/743 (26%), Positives = 362/743 (48%), Gaps = 29/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +   ++   + ER+  Y+   I++RAIPD RDG KPV RRI+++M  + L    AF+K
Sbjct: 14  ETIIEKNMVDVMSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMYGLKLYNNQAFRK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+IVGEV+G+ HPHGD S+Y++LVR++Q +   +PLI   GN G+ID D AAA RYTE+
Sbjct: 74  SAKIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSIDDDPAAAMRYTES 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +++ELIL+ +D   V     +++ + EPVV PS  PNLL NG+ GIA G AT IP H
Sbjct: 134 RLEKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSKGIAAGFATEIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + LI NP IS+E+L + + GPDFPTGG ++   E I +++  G+G   + +
Sbjct: 194 NLSEVIDATIKLIKNPLISLEELKQIVQGPDFPTGG-VIHGIEGIAQAFETGQGKINISS 252

Query: 255 RWCVEEVGRGSWCIV---VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           R+           I+   + E P+ V KS+L+  I  L+I K I  ++++RD+S  +   
Sbjct: 253 RYRFVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVKEVRDQSNREGIS 312

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +        + + ++  +   +D+   +     V      P++M L  +L  +L+H +++
Sbjct: 313 IYLELEDEANAEAIINYLMSKTDLRISYNY-NMVAIHENSPKLMNLQMLLFTYLSHLKDI 371

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----PKPVMVSRFSLTENQ 427
             +   F ++  + R+EI++G +      DE+I +I+N D         +   F  T  Q
Sbjct: 372 NTKGIEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSKKGVIEALEKTFGFTNIQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI  LRL  L K+++ + ++E   L  +  +   LL +  +    I  +++++K+ ++
Sbjct: 432 ATAIAELRLYKLSKMDQLEFQNEAKELAIKIARCKELLENPNEFDKFIIEQLKDIKKEYA 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
           K       R +     +       + + + E     +S  G+I+ +   +      S   
Sbjct: 492 KP------RFSEISQDKIRTEINTKLLAKNEDFYFFLSKEGYIKRISKKAFSSNGFSGFK 545

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDI 602
            K+ D++      ++  +++  +  G  + + A        +  G  I  L+ L +N+ I
Sbjct: 546 LKDNDAIFYYDKINSLSKLIFFTNLGNYFIIDAHTLKENGWKDIGNHISSLVALENNERI 605

Query: 603 VTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLVVKVTG 658
           +       +++  + ++++ KG A  VE  E  +     K   + +   +++  V  V  
Sbjct: 606 IRVMEIESFNTYSRFIILTKKGMAKKVEIQEFDSKQIARKRSCIPLRPNDELCDVRIVNK 665

Query: 659 DHV--AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           + +   ++      LI   + +PE S +  G+ L         +     I      I   
Sbjct: 666 EKLLFILLTGGLYYLI-DENVVPEYSLKASGISLIKTDRDQEIEAFS-PISPKNKVIIMT 723

Query: 716 GRSYNRSENDLLGWLGKRGGVGS 738
            +   +        L  R   G 
Sbjct: 724 DKGQFKRTKMETVKLVGRSSHGK 746


>gi|157060372|gb|ABV03192.1| GyrA [Chlamydia trachomatis]
 gi|157060374|gb|ABV03193.1| GyrA [Chlamydia trachomatis]
 gi|157060376|gb|ABV03194.1| GyrA [Chlamydia trachomatis]
 gi|157060378|gb|ABV03195.1| GyrA [Chlamydia trachomatis]
 gi|157060380|gb|ABV03196.1| GyrA [Chlamydia trachomatis]
 gi|157060382|gb|ABV03197.1| GyrA [Chlamydia trachomatis]
 gi|157060384|gb|ABV03198.1| GyrA [Chlamydia trachomatis]
 gi|157060386|gb|ABV03199.1| GyrA [Chlamydia trachomatis]
 gi|157060388|gb|ABV03200.1| GyrA [Chlamydia trachomatis]
          Length = 493

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 201/490 (41%), Positives = 291/490 (59%), Gaps = 11/490 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGG I+   E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDK-NLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR     +            +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTF 499
                RRT  
Sbjct: 483 -----RRTKI 487


>gi|322689392|ref|YP_004209126.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460728|dbj|BAJ71348.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 909

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 224/791 (28%), Positives = 358/791 (45%), Gaps = 60/791 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L  
Sbjct: 13  DPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG
Sbjct: 192 TNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   
Sbjct: 251 TLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP  ++  +F  + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 311 NGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALV-EGRPHTMGLKEMLQVWVDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLT 424
           RR V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR  D        ++  F L 
Sbjct: 370 RRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E   
Sbjct: 430 EVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVA 489

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT   +       T   A        V  S    +++  + S   + + 
Sbjct: 490 KWGSP-----RRTVLLDADPDGTLTPVVAQGA-GASGVSKSALEAVKAATTISSAEADVA 543

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT----LPAGNLLSGRGHGEAIQLLIDLNHNQ 600
                + K    +  T  + +             L A    S      A     +   + 
Sbjct: 544 AAAAAAKKTGEQSTLTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSTSDERLRDD 603

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVV--- 654
            I T F   +     +V+S G   +    ++ A        L +      +++  +    
Sbjct: 604 QITTIFETSTRATYGLVTSAGRLVLAHVVDLPALPAA--ATLSLKGGVQADELIGMTEST 661

Query: 655 -KVTGDHVAVVG-----ENRKLLIFSIDQ---------IPEMSRGK--GVR--------- 688
             + G+ V          + K       +         +P ++ G   GV          
Sbjct: 662 DPIRGERVITAIAMEQPTSGKTSAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAPT 721

Query: 689 ------LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 +   KDG           +      S+  S   +          R   G    K
Sbjct: 722 TMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSL-LTFEAKNVRPQGRTAGGMAGIK 780

Query: 743 GFPRSGKFLSS 753
                G  +++
Sbjct: 781 LAE--GARVAA 789



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 12/168 (7%), Positives = 33/168 (19%), Gaps = 30/168 (17%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLI 672
           L + +  G             T      + +   +++        D  +  +  +  LL 
Sbjct: 703 LAIGTRNGVIKRWNRE--APTTMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLT 760

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGIS--------------------------DVICFKI 705
           F    +    R   G+      +G                               +   +
Sbjct: 761 FEAKNVRPQGRTAGGMAGIKLAEGARVAAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTV 820

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +        +     +     R   G    +        + +
Sbjct: 821 AGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTLILA 868


>gi|23465992|ref|NP_696595.1| DNA topoisomerase IV subunit A [Bifidobacterium longum NCC2705]
 gi|23326709|gb|AAN25231.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
          Length = 909

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 224/791 (28%), Positives = 358/791 (45%), Gaps = 60/791 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L  
Sbjct: 13  DPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG
Sbjct: 192 TNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   
Sbjct: 251 TLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP  ++  +F  + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 311 NGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALV-EGRPHTMGLKEMLQVWVDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLT 424
           RR V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR  D        ++  F L 
Sbjct: 370 RRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E   
Sbjct: 430 EVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVA 489

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT   +       T   A        V  S    +++  + S   + + 
Sbjct: 490 KWGSP-----RRTVLLDADPDGTLTPVVAQGA-GASGVSKSALEAVKAATTISSAEADVA 543

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT----LPAGNLLSGRGHGEAIQLLIDLNHNQ 600
                + K    +  T  + +             L A    S      A     +   + 
Sbjct: 544 AAAAAAKKTGEQSTLTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSTSDERLRDD 603

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVV--- 654
            I T F   +     +V+S G   +    ++ A        L +      +++  +    
Sbjct: 604 QITTIFETSTRATYGLVTSAGRLVLAHVVDLPALPAA--ATLSLKGGVQADELIGMTEST 661

Query: 655 -KVTGDHVAVVG-----ENRKLLIFSIDQ---------IPEMSRGK--GVR--------- 688
             + G+ V          + K       +         +P ++ G   GV          
Sbjct: 662 DPIRGERVITAIAMEQPTSGKTSAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAPT 721

Query: 689 ------LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 +   KDG           +      S+  S   +          R   G    K
Sbjct: 722 TMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSL-LTFEAKNVRPQGRTAGGMAGIK 780

Query: 743 GFPRSGKFLSS 753
                G  +++
Sbjct: 781 LAE--GARVAA 789



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 12/168 (7%), Positives = 33/168 (19%), Gaps = 30/168 (17%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLI 672
           L + +  G             T      + +   +++        D  +  +  +  LL 
Sbjct: 703 LAIGTRNGVIKRWNRE--APTTMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLT 760

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGIS--------------------------DVICFKI 705
           F    +    R   G+      +G                               +   +
Sbjct: 761 FEAKNVRPQGRTAGGMAGIKLAEGARVAAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTV 820

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +        +     +     R   G    +        + +
Sbjct: 821 AGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTLILA 868


>gi|75911523|gb|ABA29617.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 441

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 187/443 (42%), Positives = 289/443 (65%), Gaps = 5/443 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAKRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSEL 451
            AIL++RLR L  LE  +I+SE 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEY 441


>gi|189439166|ref|YP_001954247.1| DNA topoisomerase IV subunit A [Bifidobacterium longum DJO10A]
 gi|239621283|ref|ZP_04664314.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132598|ref|YP_003999937.1| para [Bifidobacterium longum subsp. longum BBMN68]
 gi|322691358|ref|YP_004220928.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|189427601|gb|ACD97749.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum DJO10A]
 gi|239515744|gb|EEQ55611.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773543|gb|ADQ03031.1| ParA [Bifidobacterium longum subsp. longum BBMN68]
 gi|320456214|dbj|BAJ66836.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 909

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 224/791 (28%), Positives = 358/791 (45%), Gaps = 60/791 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L  
Sbjct: 13  DPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG
Sbjct: 192 TNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   
Sbjct: 251 TLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP  ++  +F  + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 311 NGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALV-EGRPHTMGLKEMLQVWVDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLT 424
           RR V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR  D        ++  F L 
Sbjct: 370 RRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E   
Sbjct: 430 EVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVA 489

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT   +       T   A        V  S    +++  + S   + + 
Sbjct: 490 KWGSP-----RRTVLLDADPDGTLTPVVAQGA-GASGVSKSALEAVKAATTISSAEADVA 543

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT----LPAGNLLSGRGHGEAIQLLIDLNHNQ 600
                + K    +  T  + +             L A    S      A     +   + 
Sbjct: 544 AAAAAAKKTGEQSTLTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSTSDERLRDD 603

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVV--- 654
            I T F   +     +V+S G   +    ++ A        L +      +++  +    
Sbjct: 604 QITTIFETSTRATYGLVTSAGRLVLAHVVDLPALPAT--ATLSLKGGVQADELIGMTEST 661

Query: 655 -KVTGDHVAVVG-----ENRKLLIFSIDQ---------IPEMSRGK--GVR--------- 688
             + G+ V          + K       +         +P ++ G   GV          
Sbjct: 662 DPIRGERVITAIAMEQPTSGKTSAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAPT 721

Query: 689 ------LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 +   KDG           +      S+  S   +          R   G    K
Sbjct: 722 TMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSL-LTFEAKNVRPQGRTAGGMAGIK 780

Query: 743 GFPRSGKFLSS 753
                G  +++
Sbjct: 781 LAE--GARVAA 789



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 12/168 (7%), Positives = 33/168 (19%), Gaps = 30/168 (17%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLI 672
           L + +  G             T      + +   +++        D  +  +  +  LL 
Sbjct: 703 LAIGTRNGVIKRWNRE--APTTMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLT 760

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGIS--------------------------DVICFKI 705
           F    +    R   G+      +G                               +   +
Sbjct: 761 FEAKNVRPQGRTAGGMAGIKLAEGARVAAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTV 820

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +        +     +     R   G    +        + +
Sbjct: 821 AGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTLILA 868


>gi|227547672|ref|ZP_03977721.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227211927|gb|EEI79823.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
          Length = 945

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 224/791 (28%), Positives = 358/791 (45%), Gaps = 60/791 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L  
Sbjct: 49  DPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTP 108

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 109 DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 167

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 168 SRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMA 227

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG
Sbjct: 228 TNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRG 286

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   
Sbjct: 287 TLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRH 346

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP  ++  +F  + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 347 NGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALV-EGRPHTMGLKEMLQVWVDH 405

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLT 424
           RR V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR  D        ++  F L 
Sbjct: 406 RRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLD 465

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E   
Sbjct: 466 EVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVA 525

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT   +       T   A        V  S    +++  + S   + + 
Sbjct: 526 KWGSP-----RRTVLLDADPDGTLTPVVAQGA-GASGVSKSALEAVKAATTISSAEADVA 579

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT----LPAGNLLSGRGHGEAIQLLIDLNHNQ 600
                + K    +  T  + +             L A    S      A     +   + 
Sbjct: 580 AAAAAAKKTGEQSTLTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSTSDERLRDD 639

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVV--- 654
            I T F   +     +V+S G   +    ++ A        L +      +++  +    
Sbjct: 640 QITTIFETSTRATYGLVTSAGRLVLAHVVDLPALPAT--ATLSLKGGVQADELIGMTEST 697

Query: 655 -KVTGDHVAVVG-----ENRKLLIFSIDQ---------IPEMSRGK--GVR--------- 688
             + G+ V          + K       +         +P ++ G   GV          
Sbjct: 698 DPIRGERVITAIAMEQPTSGKTSAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAPT 757

Query: 689 ------LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 +   KDG           +      S+  S   +          R   G    K
Sbjct: 758 TMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSL-LTFEAKNVRPQGRTAGGMAGIK 816

Query: 743 GFPRSGKFLSS 753
                G  +++
Sbjct: 817 LAE--GARVAA 825



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 12/168 (7%), Positives = 33/168 (19%), Gaps = 30/168 (17%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLI 672
           L + +  G             T      + +   +++        D  +  +  +  LL 
Sbjct: 739 LAIGTRNGVIKRWNRE--APTTMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLT 796

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGIS--------------------------DVICFKI 705
           F    +    R   G+      +G                               +   +
Sbjct: 797 FEAKNVRPQGRTAGGMAGIKLAEGARVAAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTV 856

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +        +     +     R   G    +        + +
Sbjct: 857 AGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTLILA 904


>gi|293510133|ref|ZP_06668841.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|291467077|gb|EFF09595.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M809]
          Length = 752

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 191/708 (26%), Positives = 363/708 (51%), Gaps = 24/708 (3%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M   G      F+KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+
Sbjct: 1   MYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG+
Sbjct: 61  IDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGS 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I 
Sbjct: 121 TGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIK 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  G+G   VR++   E +  G   +++TEIPY+V KS L+++I EL   K++  + +
Sbjct: 180 KAYESGKGRIIVRSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVE 239

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDE+      +     + ++ + +   ++  SD++  +  NM  +S    P++M +  I
Sbjct: 240 VRDETDRTGLRIAIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQI 298

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           +  +L H+ EV+  R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  +
Sbjct: 299 IDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENL 358

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  +  TE Q +AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  
Sbjct: 359 IEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKE 418

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K+ F         R +  E    +    ++ M+  E + + ++  G+I+     S
Sbjct: 419 ELNEIKKKFKSE------RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRS 472

Query: 538 V---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQL 592
                +  +  K+GDSL      +T D +L+ +  G+   +P      +  +  G+ +  
Sbjct: 473 YNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQ 532

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEE 648
           ++ +  ++ ++  F    +++    +  +  G                K     KV   +
Sbjct: 533 IVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKEND 592

Query: 649 KMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKIC 706
            +  V++   D +  ++      L ++  ++ +   R  GV+  + K      V+   + 
Sbjct: 593 DLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVS 651

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
           E  T + +  R   +  +  +  + KR   G  + K   ++  + +++
Sbjct: 652 ENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 699


>gi|331269785|ref|YP_004396277.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           BKT015925]
 gi|329126335|gb|AEB76280.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           BKT015925]
          Length = 970

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 221/761 (29%), Positives = 384/761 (50%), Gaps = 49/761 (6%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   N+   N   + N+   S+   + E YL YA+   KERA+PD+RDG KPVHRRI++ 
Sbjct: 1   MSKKNM---NIPKDNNIIKTSISEVMPENYLPYAVEVAKERALPDVRDGLKPVHRRILYG 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
             ++       + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+
Sbjct: 58  AYKLKATPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEAR+T  A  +L+ +D+D VD    Y++ + EP V P++FPNLL NG 
Sbjct: 118 IDGDNAAAMRYTEARLTNPALEMLRDIDKDVVDMVSNYSDTELEPKVLPARFPNLLVNGA 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG+AT+IP HN++E  +A +A IDN +IS ++L+ YI GPD PTGG I+   ++++
Sbjct: 178 FGIAVGLATNIPPHNLRESIDATVAYIDNNDISTKELMNYIKGPDLPTGG-IIIGEQALL 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IP 296
            +Y  G G   +RA+  +E++    + I++ E PY+  KS++++ I+E+   K+    + 
Sbjct: 237 SAYEKGEGRVTLRAKTSIEKLENDRYGIIIKEFPYRKNKSKILQTISEMTADKKHSKALE 296

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLME---SIFMLSDMETRFPLNMNVLSMGRVPQ 353
            + DIRDES  +    +    +S + +++      +F  ++++     NM  ++    P+
Sbjct: 297 NITDIRDESDRNGIRAVIEFKKSANVEVVERVLKYLFKKTELQCNISFNMVAIAD-GKPE 355

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--- 410
            + L  ILK ++ H++EV+ RRS   ++   +R  I++G + A   +DEI+  IR+    
Sbjct: 356 TLGLKAILKYYVEHQKEVVIRRSEKELEIAKKRFHIVEGFIKAIDIMDEILDTIRSSKSK 415

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              +  +V++F  +  Q  AI+ L L  L  LE    + E  NL  + + ++ +L+S K+
Sbjct: 416 KDSEQNLVNKFGFSMEQAQAIVELMLYKLTGLEIKVFEKEYKNLEKKIKALEKILSSEKE 475

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            +  +  E+ EVKE +         R T             + +I  E I + +SN G+I
Sbjct: 476 LFKVVKKELEEVKEKYGDP------RRTEIVHDDEQAKIDIEELILDEDIVITLSNEGYI 529

Query: 531 RS-----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
           +       +  +  +  + ++EGD     L+ +T D +++ +  G  Y +   N+   + 
Sbjct: 530 KRVADKYYRRINPKVEDIEYREGDFNTYVLNGNTKDNMMIFTNQGNLYQIRISNIPEMKW 589

Query: 586 HGEAIQLLIDLN----HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKG 638
             +  +L   +       + I+  ++      +   +  +++G        +   N  K 
Sbjct: 590 KEKGERLDTLIKSLDIDKEKIIDIYINSELLPSKSFMFFTNRGVIKKSSLDKFKTNYSK- 648

Query: 639 KTFLKVSSEEKMKLVVKVTGDHV---AVV-GENRKLL-----IFSIDQIPEMSRGKGVRL 689
              LK+   EK+  +  V   HV     V  +N              +   M    G ++
Sbjct: 649 LLALKLKDNEKLIDIKLVNTGHVEKYISVDTKNGLSFTVDIPRIEDSERNIM----GTQI 704

Query: 690 QSYKDGGISDVICFKICEGLT--WIDSAGRSYNRSENDLLG 728
            +  +      I +     ++   ++       +  N +  
Sbjct: 705 FNISNNDEVKSINYTDKFNISNFVVNINKNGSIKISNRINY 745



 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 77/269 (28%), Gaps = 21/269 (7%)

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           R           +        E + I            +  +      +  +        
Sbjct: 691 RIEDSERNIMGTQIFNISNNDEVKSINYTDKFNISNFVVNINKNGSIKISNRINYKNFYG 750

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL--NHNQDIVTAFV---YD 609
            +A++  R+++    G  Y +PA  + +    G  +  LID    + ++IV  +      
Sbjct: 751 CYANSLSRLIIFGNKGNVYCVPAYMIQNIDSKGIKLNDLIDDFKQNEEEIVNIYSISELS 810

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGE 666
            +  +   +  G        E        K +     E+ +  V+    D    V ++ +
Sbjct: 811 DSTSVYFFTKSGYVKRTSLEEFNGENPCIKGYKFKKEEDTIINVLLANNDDKKDVILITK 870

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           N   + F  + I  M +   GV   S +D   +         E    I+  G   N+   
Sbjct: 871 NAMGIRFEANNISYMGKIASGVTGISLRDNDEVIFAEFIDKKEEKDVINIDGEFKNKLNI 930

Query: 725 DLLGWL-----------GKRGGVGSLVPK 742
           +    +             R G G  +  
Sbjct: 931 ECKDRIEAEIILENIKNQNRAGKGKKLIN 959


>gi|289178865|gb|ADC86111.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 890

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 215/773 (27%), Positives = 345/773 (44%), Gaps = 75/773 (9%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               VEE++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M +M L  
Sbjct: 12  DPRQVEEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLP 71

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 72  TRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 130

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V PS  PNLL NG SGIAVGMA
Sbjct: 131 SRYTEARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMA 190

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  ++ +P+ +++ L++Y+ GPD+P GGII+  R+ I ++Y  GRG
Sbjct: 191 TNMATHNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIG-RQGIRDAYETGRG 249

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               R+   VE +      IVVT++PY V   R++E+I+E +   ++  +    D +   
Sbjct: 250 VVTTRSATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRH 309

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP  ++  +F  + ++  F +N   L     P  + L  +L  W+ H
Sbjct: 310 NGTRIVIELKTGFDPAAVLAQLFKHTPLQENFAINNVALV-NGRPHTLGLRSLLDVWIEH 368

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           RR V+ RRS FR Q    R+ +++GLL+A ++IDE+I +IR+ D     K  ++SRFSL 
Sbjct: 369 RRGVIRRRSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSRFSLD 428

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q   IL+LRLR L K+   +++SE D L +   +++ +L S       +  E+ +   
Sbjct: 429 DIQAQYILDLRLRRLTKMSRIELESERDELQSSITELERILGSAALLDGVVIDEMDKAVA 488

Query: 485 IFSKSTDL-------GRRRTTFCEVSRADK----------------------------AT 509
            +               R                                         T
Sbjct: 489 TYGTPRRTVLLDEGDDGRLVPVVAHGDDMPSDAALDAARHAENVLDAADAVAAARKAGET 548

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHS------VDLSALHFKEGDSLKIALHAHTTDRI 563
            +   IE EP  + +S  G I  +   +              +  D +   + A T    
Sbjct: 549 AEALRIEDEPCVIALSASGLIARMSIDALTIWAKRGAHTEKREPDDVIVSLMPARTRADY 608

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQL-------------LIDLNHNQDIVTAFVYDS 610
            L+++ G+        L +    G                    D    + ++       
Sbjct: 609 ALVTSAGRMVLAHVVELPNLEVTGHLSLTGGIEATELLTSTESTDPVPGERVIATLALRD 668

Query: 611 T----------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           T            + + +  G             T    + + +   +++ +      D 
Sbjct: 669 TVGQDDTAAQLPPVGLGTRNGIVKRWNRE--SPTTMDSWSIIDLKDGDELLVAADAHDDD 726

Query: 661 -VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
               V  +  LL +    +    R   G+      DG             + W
Sbjct: 727 RFVFVSSDSSLLTYEARNVRPQGRTAAGMAGIHLADGCTVLSCAVVAHADVEW 779


>gi|73916818|gb|AAZ93277.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 764

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 191/690 (27%), Positives = 349/690 (50%), Gaps = 27/690 (3%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYT
Sbjct: 1   RKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP
Sbjct: 61  EARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIP 120

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   V
Sbjct: 121 PHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVV 179

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +E++  G   IV+ EIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +
Sbjct: 180 RSKTEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRI 239

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+
Sbjct: 240 AIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVI 298

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +
Sbjct: 299 LARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAE 358

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+  
Sbjct: 359 AIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP 418

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFK 546
                 R +  E +         ++I +E   V ++  G+I+     S     L  +  +
Sbjct: 419 ------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 472

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R           + +   N++I+
Sbjct: 473 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 532

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E         K   + K+  + +++  V  +
Sbjct: 533 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 592

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             D V +V +N   L F+I+++P +  +  GV+  + K+  +              +   
Sbjct: 593 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLL--T 650

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            R   +  +        R   G  V +   
Sbjct: 651 QRGSLKRVSIEEILATSRAKRGLQVLRELK 680


>gi|325136457|gb|EGC59063.1| DNA gyrase/topoisomerase IV, A subunit [Neisseria meningitidis
           M0579]
          Length = 533

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 198/539 (36%), Positives = 306/539 (56%), Gaps = 53/539 (9%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG  I      + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL     P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVD-GQPRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDK 418

Query: 419 --------------------------------------SRFSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            L++ +I     NL+ +      +L+  ++    I  E+ E  +++       RRR+  
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEESNQLW------RRRRSEI 531


>gi|253682593|ref|ZP_04863390.1| DNA gyrase subunit A [Clostridium botulinum D str. 1873]
 gi|253562305|gb|EES91757.1| DNA gyrase subunit A [Clostridium botulinum D str. 1873]
          Length = 970

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 218/702 (31%), Positives = 374/702 (53%), Gaps = 40/702 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +   N   + N+   S+   + E YL YA+   KERA+PD+RDG KPVHRRI++ 
Sbjct: 1   MSKKYM---NIPKDNNIIKTSISEVMPENYLPYAVEVAKERALPDVRDGLKPVHRRILYG 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
             ++       + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+
Sbjct: 58  AYKLKATPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRIPLIDGHGNWGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEAR+T  A  +L+ +D+D VD    Y++ + EP V P++FPNLL NG 
Sbjct: 118 IDGDNAAAMRYTEARLTNPALEMLRDIDKDVVDMVSNYSDTELEPKVLPARFPNLLVNGA 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG+AT+IP HN++E  +A +A IDN +IS ++L+ YI GPD PTGG I+   ++++
Sbjct: 178 FGIAVGLATNIPPHNLRESIDATVAYIDNNDISTKELMNYIKGPDLPTGG-IIIGEQALL 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IP 296
            +Y  G G   +RA+  +E++    + I++ E PY+  KS++++ I+E+   K+    + 
Sbjct: 237 SAYEKGEGRVTLRAKTSIEKLENDRYGIIIKEFPYRKNKSKILQTISEMTADKKHSKALE 296

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLME---SIFMLSDMETRFPLNMNVLSMGRVPQ 353
            + DIRDES  +    +    +S   +++      +F  ++++     NM  ++    P+
Sbjct: 297 NITDIRDESDRNGIRAVIEFKKSASLEVVERVLKYLFKKTELQCNISFNMVAIAD-GKPE 355

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--- 410
            + L  ILK ++ H++EV+ RRS   ++   +R  I++G + A   +D+I+  IR+    
Sbjct: 356 TLGLKAILKYYVEHQKEVVIRRSEKELEIAKKRFHIVEGFIKAIDIMDKILDTIRSSKSK 415

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              +  +V++F  +  Q  AI+ L L  L  LE    + E  NL  E + ++ +L+S K+
Sbjct: 416 KDSEQNLVNKFGFSMEQAQAIVELMLYKLTGLEIKVFEKEYKNLEKEIKALEKILSSEKE 475

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            +  +  E+ EVKE +         R T             + +I  E I + +SN G+I
Sbjct: 476 LFKVVKKELEEVKEKYGDP------RRTEIVHDDEQAKIDIEELILDEDIVITLSNEGYI 529

Query: 531 RS-----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
           +       +  +  +  + ++EGD     L+ +T D +++ + +G  Y +   N+   + 
Sbjct: 530 KRVADKYYRRINPKVEDIEYREGDFNTYLLNGNTKDNMMIFTDEGNLYQIRISNIPEMKW 589

Query: 586 HGEAIQLLIDLN----HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKG 638
             +  +L   +       + I+  ++      +   +  +++G        +   N  K 
Sbjct: 590 KEKGERLDTLIKALDIEKEKIIDIYITSELLPSKSFMFFTNRGVIKKSSLDKFKTNYSK- 648

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVA----VVGENRKLLIFSID 676
              LK+   EK+  +  V  +H+     V+ +N   L F++D
Sbjct: 649 LLALKLKDNEKLIDIKLVNTEHIEKYISVITKNG--LSFTVD 688



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 85/291 (29%), Gaps = 21/291 (7%)

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             I   I  + +     T    R           +        E + I  +         
Sbjct: 669 EHIEKYISVITKNGLSFTVDIPRIEDSERNIMGTQIFNISDNDEVKSIKYIDKFDMKNFV 728

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +  +      +  +         +A++  R+++    G  Y +PA  + +    G  +  
Sbjct: 729 VNINKNGNIKISNRINHKNFYGCYANSLSRLIIFGEKGNVYYIPAYMIQNIDSKGIKLND 788

Query: 593 LIDL--NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           LID      ++IV  +    +  +  +   +  G        E  A     K +     +
Sbjct: 789 LIDDFKEKEENIVNIYSISEFSDSTSVYFFTKSGYVKRTNLQEFNAENPCIKGYKLKKEQ 848

Query: 648 EKMKLVVKVTGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVIC 702
           +K+  V+    D    + ++ +N   + F  + I  M +   GV   S +D   +     
Sbjct: 849 DKIINVLLFNNDDKKDIILITKNAMGIRFEANSISYMGKIASGVTGISLRDNDEVIFAQF 908

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWL-----------GKRGGVGSLVPK 742
               E    I+  G   ++   +    +             R G G  +  
Sbjct: 909 IDKKEEKDIINICGEFKSKLNVECKDRIESEIILKNIKNQNRAGKGKKLIN 959


>gi|315651451|ref|ZP_07904474.1| DNA gyrase subunit A [Eubacterium saburreum DSM 3986]
 gi|315486271|gb|EFU76630.1| DNA gyrase subunit A [Eubacterium saburreum DSM 3986]
          Length = 745

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 209/765 (27%), Positives = 374/765 (48%), Gaps = 60/765 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ YL Y++S I  RAIPD RDG KPV RR+++ MSE+ +      
Sbjct: 1   MAEKILRTEYSEEMQKSYLDYSMSVITARAIPDARDGLKPVQRRVLYDMSELKIFSDRPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV L+Q F +   LI G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKSMALIDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EA++ + AE + L+ +D+  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSI
Sbjct: 121 EAKLARFAEEVYLKDLDK-TVEFVSNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+C+  +A I N +I  EKLLE + GPDFPTGGII  ++  +++ Y  G G  +
Sbjct: 180 PTHNLSEVCDTCIAYIKNRDIDTEKLLEILHGPDFPTGGIIA-NKRDLLDIYSTGNGKLK 238

Query: 252 VRARWCVE--EVGRGSWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +  VE          ++++EIPY +     ++L+  +A L+  K++  + DI ++S 
Sbjct: 239 LRGKIEVELGRRKSDKDKLIISEIPYTMIGTGINKLLVDVANLVETKKLSDVVDISNQSD 298

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    +  D + +   ++  + +E  F +NM  +     P+++ L  ILK ++ 
Sbjct: 299 KNGTRIVLELKKDADIEKIKNILYKKTKLEDTFGVNMLAIV-EGRPEILSLRDILKNYIE 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------- 412
            + ++  ++ +  +     + EI +GL+ A   ID IIAI+R                  
Sbjct: 358 FQYKITTKKYNILLNKELEKKEIQEGLIRAVDVIDLIIAILRGSKNLAQAKKCLTSGDTT 417

Query: 413 -------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                         + S T+ Q  A+L++RL  L  LE   +  + +  L    +  ++L
Sbjct: 418 GITFKVKSLEKDAKKLSFTDKQAQAVLDMRLYKLIGLEIEALLKDNEITLKNIAEYKNIL 477

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            + K        ++ ++K+ F+        R T+ E   A +A  ++ ++  E +  V+ 
Sbjct: 478 KNHKNMDKLFIKDLEKIKKEFAVP------RKTYIE--DAKEAVYEEEVLPSEEVIFVMD 529

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
             G+ + L  ++ D +A + +  +          TDRI + S  G  Y L   +L   + 
Sbjct: 530 RFGYCKILDRNTFDKNAENIETENKYVF--PVMNTDRICIFSNKGILYKLKVTDLQISKL 587

Query: 586 HGE--AIQLLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             +   +  L   + + + +   V +       +L+++ KG    V   E   N ++   
Sbjct: 588 KDKGTPVDNLTKFDSSNENILLAVSEDNIQGSYILMITKKGYVKKVSFEEFKTNNKQ-VV 646

Query: 641 FLKVSSEEKMKLVVKVT---GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
             K+++++ +  V  ++      + VV +   +L F I ++ E  +  +G +  +     
Sbjct: 647 STKLTNDDVLVGVNLLSAGINTDIFVVSDANYILRFDISEVNEFKKNTRGEKAMTLGYNE 706

Query: 697 ISDVICFKICEGLTWIDSAGRSY--NRSENDLLGWLGKRGGVGSL 739
                     E +  +   G +    +  N L      +G  G  
Sbjct: 707 FV--------ENMYLLSDTGIAEVNGKEVNLLKVRQSHKGYKGQK 743


>gi|301633131|gb|ADK86685.1| DNA topoisomerase IV, A subunit [Mycoplasma pneumoniae FH]
          Length = 789

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 208/742 (28%), Positives = 365/742 (49%), Gaps = 30/742 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +       +  YA   I++RA+PDLRDG KPV RRI++ M +MGL   + +KKSAR VGE
Sbjct: 13  IEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTSPYKKSARAVGE 72

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S+YD++VR++Q +      IS  GN G+IDGD+AAA RYTEAR++    
Sbjct: 73  IMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAMRYTEARLSPYGF 132

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+ +++  V F + +++ + EP V P+  PNL  NGTSGIA G AT+I  HNV E+ +
Sbjct: 133 ELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATNIAPHNVGELLD 192

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
                I+NP+  ++ +L+ + GPDFPTGG++    + +   Y+ G+G F ++A++     
Sbjct: 193 GLSYRIENPDCDLKAILKIVKGPDFPTGGLVYF-EQELANIYQTGKGKFVIQAKYE-TNT 250

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   IV+TEIPY+  K+ ++++I ELI   ++  LE + D S      ++      L 
Sbjct: 251 AFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIRIIINHKDFLS 310

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            D +M  +F  + ++  F L  N +   R P  + L     ++LA   E++   + + + 
Sbjct: 311 ADKIMAFLFKHTQLQVNFNL-NNTVIANRCPVRVGLLAYFDQFLAFAHELIINSAKYDLA 369

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAILNLRLRS 438
             ++R+EI+KGL+ A   IDEII +IR     +        +++ T NQ +AI++LRL  
Sbjct: 370 LANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDKYAFTLNQAEAIVSLRLYQ 429

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L   +   + +E   L    +  + L+   + +   +  +  + K+ F++       R  
Sbjct: 430 LTNTDIKVLFAEQKELEQTIQTAECLIAKPQARNQLLQAQFFQYKKQFNQP------RRA 483

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL-KIALHA 557
                   +       IE + + ++IS+ G     +   +    + FK            
Sbjct: 484 QIVGLIEKQKVQDSDFIEHKEVGLLISHDGIYFKFEPEQLAKHLVEFKSEQDQLIFGGVV 543

Query: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDST---C 612
             +D   ++++ G   T+P       +     E +     L  ++ +V A + +      
Sbjct: 544 QNSDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQ 603

Query: 613 KLLVVSSK-GNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH---VAVVGEN 667
           +LLV++S+ G    VE S++I   + K    + +   +K+      T      V +V  +
Sbjct: 604 QLLVLTSQCGMVKRVELSKVINTKQIKSSCCMALRERDKLVNAFVQTKREPKLVCLVSSS 663

Query: 668 RKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
                F  ++IP +S +G GV+    K +  +   +  +  + L  I+S G  YN     
Sbjct: 664 NSFATFLAEEIPIISNKGIGVKGIKLKAEEKVRFAMPLQDNDALVVINSDGGVYN--FEV 721

Query: 726 LLGWLGKRGGVGSLVPKGFPRS 747
           +   +  R  VG  +    P++
Sbjct: 722 VELAVASRMSVGKKLI---PKT 740


>gi|213581963|ref|ZP_03363789.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 465

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 193/411 (46%), Positives = 272/411 (66%), Gaps = 7/411 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P  
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAE 405


>gi|13507862|ref|NP_109811.1| topoisomerase IV subunit A [Mycoplasma pneumoniae M129]
 gi|2501298|sp|P75352|PARC_MYCPN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1673679|gb|AAB95679.1| topoisomerase IV subunit A [Mycoplasma pneumoniae M129]
          Length = 789

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 208/742 (28%), Positives = 365/742 (49%), Gaps = 30/742 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +       +  YA   I++RA+PDLRDG KPV RRI++ M +MGL   + +KKSAR VGE
Sbjct: 13  IEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTSPYKKSARAVGE 72

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S+YD++VR++Q +      IS  GN G+IDGD+AAA RYTEAR++    
Sbjct: 73  IMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAMRYTEARLSPYGF 132

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+ +++  V F + +++ + EP V P+  PNL  NGTSGIA G AT+I  HNV E+ +
Sbjct: 133 ELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATNIAPHNVGELLD 192

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
                I+NP+  ++ +L+ + GPDFPTGG++    + +   Y+ G+G F ++A++     
Sbjct: 193 GLSYRIENPDCDLKAILKIVKGPDFPTGGLVYF-EQELANIYQTGKGKFVIQAKYE-TNT 250

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   IV+TEIPY+  K+ ++++I ELI   ++  LE + D S      ++      L 
Sbjct: 251 AFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIRIIINHKDFLS 310

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            D +M  +F  + ++  F L  N +   R P  + L     ++LA   E++   + + + 
Sbjct: 311 ADKIMAFLFKHTQLQVNFNL-NNTVIANRCPVRVGLLAYFDQFLAFAHELIINSAKYDLA 369

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAILNLRLRS 438
             ++R+EI+KGL+ A   IDEII +IR     +        +++ T NQ +AI++LRL  
Sbjct: 370 LANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDKYAFTLNQAEAIVSLRLYQ 429

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L   +   + +E   L    +  + L+   + +   +  +  + K+ F++       R  
Sbjct: 430 LTNTDIKVLFAEQKELEQTIQTAERLIAKPQARNQLLQAQFFQYKKQFNQP------RRA 483

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL-KIALHA 557
                   +       IE + + ++IS+ G     +   +    + FK            
Sbjct: 484 QIVGLIEKQKVQDSDFIEHKEVGLLISHDGIYFKFEPEQLAKHLVEFKSEQDQLIFGGVV 543

Query: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDST---C 612
             +D   ++++ G   T+P       +     E +     L  ++ +V A + +      
Sbjct: 544 QNSDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQ 603

Query: 613 KLLVVSSK-GNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH---VAVVGEN 667
           +LLV++S+ G    VE S++I   + K    + +   +K+      T      V +V  +
Sbjct: 604 QLLVLTSQCGMVKRVELSKVINTKQIKSSCCMALRERDKLVNAFVQTKGEPKLVCLVSSS 663

Query: 668 RKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
                F  ++IP +S +G GV+    K +  +   +  +  + L  I+S G  YN     
Sbjct: 664 NSFATFLAEEIPIISNKGIGVKGIKLKAEEKVRFAMPLQDNDALVVINSDGGVYN--FEV 721

Query: 726 LLGWLGKRGGVGSLVPKGFPRS 747
           +   +  R  VG  +    P++
Sbjct: 722 VELAVASRMSVGKKLI---PKT 740


>gi|218516073|ref|ZP_03512913.1| DNA gyrase subunit A [Rhizobium etli 8C-3]
          Length = 675

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 205/673 (30%), Positives = 331/673 (49%), Gaps = 59/673 (8%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++DGD  AA RYTE R+ + A
Sbjct: 10  DVMGKYHPHGNAAIYDALARMAQHWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAA 69

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ 
Sbjct: 70  HSLLDDLDKETVDFRDNYDGTVSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVI 129

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +ALI++P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R    +E 
Sbjct: 130 DGCIALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVAAIEP 188

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+    R  
Sbjct: 189 MRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDA 248

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           + ++++  ++  + ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+ F +
Sbjct: 249 NAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRTKFLL 307

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---------------------------- 412
           +    R  +L GL IA  NIDE+I +IR                                
Sbjct: 308 RKARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDP 367

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +      ++L+E Q  AIL LRL  L  L   +I  EL+ +  E      +L+S  + 
Sbjct: 368 RHRINEDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRI 427

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              +  E+  V++ F        RRT   +          + +I +E + V +S+ G+I+
Sbjct: 428 QTIVKDELTAVRDEFGTP-----RRTEIVDGGLEMD---DEDLIAREDMVVTVSHLGYIK 479

Query: 532 S--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-- 581
                     +      S +  ++ D +      +T   +L  S+ G  Y      L   
Sbjct: 480 RVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIG 539

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANT 635
           +    G+A+  ++ L   + I T               ++  +++G     + S+ +   
Sbjct: 540 TPTSRGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVN 599

Query: 636 RKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQS 691
           R GK  +K+    +++  V   T  D V +     + + FS+D +     R   GVR  +
Sbjct: 600 RNGKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGIN 659

Query: 692 YKDGGISDVICFK 704
             +G     +   
Sbjct: 660 LGEGDRIISMTIV 672



 Score = 39.8 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 2/59 (3%)

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           DGG+       I      +  +   Y +          +RGG G        R   F+S
Sbjct: 452 DGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM--TTRDEDFVS 508


>gi|187235574|gb|ACD02000.1| putative gyrase subunit A [Clostridium septicum]
          Length = 498

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 201/498 (40%), Positives = 316/498 (63%), Gaps = 14/498 (2%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           PD+RDG KPVHRRI+++M E+GL     ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ
Sbjct: 1   PDVRDGLKPVHRRILYSMHELGLSPEKGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
            F  RY L+ G GNFG++DGD+AAA RYTEA+M ++A  +L+ +++D V+F   ++ E+ 
Sbjct: 61  DFSMRYMLVDGHGNFGSVDGDNAAAMRYTEAKMNKIAAEMLRDINKDTVNFIPNFDGEEK 120

Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223
           EP V PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  + LIDNPE +I +L+  I G
Sbjct: 121 EPEVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIMLIDNPESTILELMTVIKG 180

Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283
           PDFPTG   +  +  I  +Y  G+G   VRA+  +EE       I+VTEIPYQV K++LI
Sbjct: 181 PDFPTGA-TIMGKSGIRAAYETGKGRVIVRAKAEIEEEN-NRHRIIVTEIPYQVNKAKLI 238

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           E IA+L+  K+I  + D+RDES  +   ++    +  +P++++  ++  + M+  F + M
Sbjct: 239 ENIADLVKDKKIVGISDLRDESDREGMRIVIELKKDANPNVVLNLLYKHTKMQDTFGVIM 298

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
             L     PQV+ +  +L  +++ ++EV+ RR++F +   + R  IL+GL IA  NIDE+
Sbjct: 299 LALV-NNEPQVLNIKQVLNYYISFQKEVITRRTTFELNKAEARAHILEGLRIALDNIDEV 357

Query: 404 IAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           I+IIR        +  ++ RF+L+E Q  AIL +RLR L  LE  +I+ E   L+   + 
Sbjct: 358 ISIIRGSKTSEIARNTLMERFNLSEKQSTAILEMRLRRLTGLERDKIEEEYAELMKLIDY 417

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++S+L S ++    I  E+ ++K  +        RRT+  +V         + +I++E +
Sbjct: 418 LNSILASEEKLLGVIKDELLQIKTKYGDE-----RRTSIEKVVNE---IDIEDLIQEEEV 469

Query: 521 TVVISNRGWIRSLKSHSV 538
            V +++ G+I+ + + + 
Sbjct: 470 VVTLTHTGYIKRISADTY 487


>gi|301598495|pdb|3IFZ|A Chain A, Crystal Structure Of The First Part Of The Mycobacterium
           Tuberculosis Dna Gyrase Reaction Core: The Breakage And
           Reunion Domain At 2.7 A Resolution
 gi|301598496|pdb|3IFZ|B Chain B, Crystal Structure Of The First Part Of The Mycobacterium
           Tuberculosis Dna Gyrase Reaction Core: The Breakage And
           Reunion Domain At 2.7 A Resolution
          Length = 508

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 178/506 (35%), Positives = 294/506 (58%), Gaps = 18/506 (3%)

Query: 6   ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++++    ++    ++ V +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 1   MTDTTLPPDDSLDRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMF 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YDSLVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 61  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 121 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ +A          + E ++  ++  + GPDFPT G ++   + 
Sbjct: 181 IAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAG-LIVGSQG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + L
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVD-GVPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---K 414
           D +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     +
Sbjct: 359 DQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 419 AGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFC 500
           +  E+ E+ +          RRT   
Sbjct: 479 VRDELAEIVDRHGD-----DRRTRII 499


>gi|240047650|ref|YP_002961038.1| DNA topoisomerase IV subunit A [Mycoplasma conjunctivae HRC/581]
 gi|239985222|emb|CAT05235.1| Topoisomerase IV subunit A [Mycoplasma conjunctivae]
          Length = 864

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 199/716 (27%), Positives = 356/716 (49%), Gaps = 25/716 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             +   SL   + E+++ YA   I+ RAIPD+RDG KPV RRI+++M  +GL    A+KK
Sbjct: 6   NQIINSSLDNIVAEKFIRYAKYVIQNRAIPDVRDGLKPVQRRILYSMWMLGLKKEKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD S+YD+LVR++Q +    PL+   GN G+ID D AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSSIYDALVRMSQEWKINIPLVDMHGNKGSIDDDPAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +++ L+L+ ++++ + +   +++ + EP V P+  PNLL NG  GIA G AT IP H
Sbjct: 126 RLEEISALMLELLNKNVISWAPNFDDSEKEPTVLPTIVPNLLVNGAIGIASGFATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ + A+A+I N +I+  +L   I GPDFPTGG IV     I +++  G+G   + A
Sbjct: 186 NLSEVIDGAIAMIKNEKITNSELQSIIPGPDFPTGG-IVYDNGGISDAFSKGKGRISLVA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           ++ +         I +++IPY + K+ LI +I ++   +++  ++++ D+S  +  ++  
Sbjct: 245 KYEIV-NKNKDISIQISQIPYGIAKANLIRQIDDIRFEEKVYGIKEVIDQSDRNGILISI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                 + DL++  +   +DM+  +  N   +     P+++ L  ++K +L H + +  +
Sbjct: 304 DLEADANVDLVVNYLLQKTDMQIYYSYNSVAIC-NNSPKLVSLSEMIKYYLDHLKNIKLK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----PKPVMVSRFSLTENQVDA 430
              + +    +R EI++G L      DE+I +IR  D         +++ F  T+ Q +A
Sbjct: 363 EIDYDLFKSQKRYEIIQGFLKVADITDEVIKVIRASDNSKIGVIKDLIAHFGFTQIQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I  +RL  L K+++    SE   L  + E +++L N        +   +++V+  F +  
Sbjct: 423 IAQMRLYRLSKIDQENFLSESKELENKIELLNNLKNDSTAFKKFLIKTLKQVQNNFGQP- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R T             + +I+ E I   I+ +G+ + +   +    DL     K+
Sbjct: 482 -----RKTQILKKDFSIKINHEDLIKDENIYFGITQQGYYKKISLKNFSLSDLDKYAIKK 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            D L +    +  D+I L++       L A      S +  G  +++ +D   ++ IV  
Sbjct: 537 DDFLILLTKLNLKDKIFLVTNKANLVVLAAHQLEETSYKNIGNDLKIEVDFQQDEYIVAQ 596

Query: 606 FVYDSTC---KLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                      +++VS  G A  V    +    T+K     K+   +++          +
Sbjct: 597 INISENKNNSNIILVSKHGLAKRVSLDSLFNLRTKKLTNIFKLKEHDELIGAYLTDNLAN 656

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI-CFKICEGLTWIDS 714
           +A++    + L  +   IP   R   GV+L + K G    +       E +  IDS
Sbjct: 657 IAIISNLNRSLKVAEIDIPIYGRNSAGVKLATLKKGEQIQLAYPIADGEKIAIIDS 712


>gi|187778655|ref|ZP_02995128.1| hypothetical protein CLOSPO_02250 [Clostridium sporogenes ATCC
           15579]
 gi|187772280|gb|EDU36082.1| hypothetical protein CLOSPO_02250 [Clostridium sporogenes ATCC
           15579]
          Length = 956

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 216/666 (32%), Positives = 364/666 (54%), Gaps = 28/666 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             + N+ A  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       
Sbjct: 8   PKDNNIVAFPLEEAMPENYLPYAVEVAKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+++GK HPHGD SVYD++V LAQ F  R P+I G GN+G+ DGDSAAA RY
Sbjct: 68  YYKSARIVGDILGKYHPHGDSSVYDAMVILAQSFTTRMPIIDGHGNWGSQDGDSAAAMRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +++ +D+D V+  D Y+  + EP V P+KFPN+L NG  GIAVG+AT+I
Sbjct: 128 TEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  LA ID  EI+ ++LL YI GPD PTGG ++  + S++ +Y  G G   
Sbjct: 188 PPHNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGG-VIIGKNSMLSAYETGEGRVT 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAE 307
           +RA+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  
Sbjct: 247 LRAKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDR 306

Query: 308 DVRIVLFPKNR---SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +    +    +       +  ++ ++  +D+++    NM  L     P+ + L  +LK +
Sbjct: 307 NGTRAVIEFKKIVTEDVVEKTLKYLYKKTDLQSNISFNMVAL-AEGKPKTLGLKAMLKYY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + H++EV+ R++   ++  ++R  I++G + A   +DEII  IR        +  ++ +F
Sbjct: 366 VEHQKEVVTRKTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMEKF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           S T+ Q +AIL L L  L  LE    + E   L     K+  +L+S K+    I  E+ E
Sbjct: 426 SFTDIQAEAILELMLYKLTGLEIVAFEKEYKELEKLINKLKKILSSEKELLKVIKKELIE 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV----ISNRGWIRSLKSHS 537
           VKE ++      +RRT+  E     K  +++ ++E++ +  +     + R  ++S    S
Sbjct: 486 VKETYND-----KRRTSIIEDDEKAKIDIEEIIVEEDVVVTLSNEGFTKRIALKSYNRSS 540

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL---I 594
            ++  + ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L     
Sbjct: 541 ANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIK 600

Query: 595 DLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            ++ ++ I+ AF  D       +L ++  G        +   N  K    LK+  EE + 
Sbjct: 601 TIDLSETIIEAFSIDDFTAQKDMLFITDSGYMKKTTLDKFNTNYTK-IMALKLKKEESLL 659

Query: 652 LVVKVT 657
               V 
Sbjct: 660 KADLVD 665



 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 110/349 (31%), Gaps = 11/349 (3%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DEII  I   +             +  +  I +     ++K    +  +    ++A K K
Sbjct: 596 DEIIKTIDLSETIIEAFSIDDFTAQKDMLFITDS--GYMKKTTLDKFNTNYTKIMALKLK 653

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR-ADKATLQQAMIEKEP 519
            +  L            +   +K     S ++        + +    K          + 
Sbjct: 654 KEESLLKADLVDRTREEKFFNIKTQKGLSFNIEEPSLEAVDRNIVGYKLFDILPNDSIKQ 713

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +    +       +      L  +   + +   ++L   ++  I+L  ++GKAY +PA  
Sbjct: 714 VDFCDNYEYKSFYVNISKDGLITISDLKENKSHVSLFTDSSKTIVLFDSEGKAYYIPAFM 773

Query: 580 LLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           L + +  G  I        +  + ++ F ++    +  +S KG       SE+       
Sbjct: 774 LQNIKEKGINISAFTGDKISLLNAISTFRFEEDISIYFISKKGLIKRTVLSEL-KIEGNS 832

Query: 639 KTFLKVSS-EEKMKLVVKVT---GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
               K     +++  ++        ++ ++ E   ++ F  + +  M +   GV   S K
Sbjct: 833 AQVYKFKDKGDELVSILIKEHGEEKNIIIITEKAMVIRFKSEAVNPMGKMASGVTGISLK 892

Query: 694 D-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           D   +   +     +              +       +  R G+G+ + 
Sbjct: 893 DLDKVILALIIDENDTGKIKIKTKSKDKGTVEINKIKVQNRAGIGNSLM 941


>gi|289642471|ref|ZP_06474616.1| DNA gyrase, A subunit [Frankia symbiont of Datisca glomerata]
 gi|289507730|gb|EFD28684.1| DNA gyrase, A subunit [Frankia symbiont of Datisca glomerata]
          Length = 744

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 188/672 (27%), Positives = 315/672 (46%), Gaps = 21/672 (3%)

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           RLAQP+  RYPL+ G GNFG+   D  AA RYTE+R+  +A  +L+ +D+D VDF   Y+
Sbjct: 2   RLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTESRLAPLAMEMLRDIDQDTVDFAPNYD 61

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE----ISIE 215
               EP + PS+FPNLL NG  GIAVGMAT+IP HN++E+ +     + +P+      +E
Sbjct: 62  GRSQEPTILPSRFPNLLVNGAGGIAVGMATNIPPHNLREVADGVKWFLAHPDASDSELLE 121

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
            LLE I GPDFPT G ++  R+ I ++YR GRG  R+RA   VEE   G   +VVTE+PY
Sbjct: 122 ALLELIKGPDFPTAG-LIVGRQGIEDAYRTGRGSIRMRAVVQVEENK-GRTQLVVTELPY 179

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           QV    L EKIAEL+   RI  + DIRDE SA   + ++    R     +++ +++  + 
Sbjct: 180 QVNPDNLAEKIAELVRDNRISGISDIRDETSARTGQRLIIDLKRDAVAKVVLNNLYKHTQ 239

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ++  F +NM  +    VP+ + LD +++ ++ H+ +V+ RR+ ++++    R+ +L+GLL
Sbjct: 240 LQDTFGVNMLAIVD-GVPRTLRLDQMVRYYVDHQVDVIVRRTRYQLRKARERLHVLEGLL 298

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           IA  ++DE+I +IRN +              L+E Q  AIL+++LR L  LE  +I  E 
Sbjct: 299 IALDHLDEVINLIRNAESADAARGQLMDRFSLSEIQAVAILDMQLRRLAALERQKIIDEA 358

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L A+  +++++L S  +Q   I  E+ E+ + F                     A   
Sbjct: 359 AELRAKIAELEAILASPARQREIIGEELTEIVDRFGDERRTRLVPFEGDMSVEDLIARED 418

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             +          +     RS +     +     +E D ++      T   +L  +  G+
Sbjct: 419 VVVTVTRGGYAKRTKTDLYRSQRRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGR 478

Query: 572 AYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIV 626
            Y   A  L       +   +  ++    ++ I              L++ + +G     
Sbjct: 479 VYRAKAHELPEQARTAKGQHVANILAFGQDERIAEVMAIKDYQAAPYLVLATRRGLCKKT 538

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR 683
             +E  +N   G   + +  ++++     V+ GD + +V    + + F  D   +  M R
Sbjct: 539 ALAEFDSNRSGGLVAINLRDDDELIAARLVSAGDDLLLVSRQAQSIRFHADDEQLRPMGR 598

Query: 684 G-KGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
              GV    +        +     E     + +    Y +  +     +  RGG G L  
Sbjct: 599 ATSGVIGMRFDSDDELLAMEVVPPESEANLLVATSGGYAKQTSLGEYPVQGRGGKGVLTA 658

Query: 742 KGFPRSGKFLSS 753
           K     G  + +
Sbjct: 659 KIVSTRGGLVGA 670



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVT-GDH 660
               +S   LLV +S G A      E     R GK  L    VS+   +   + V+  D 
Sbjct: 619 VVPPESEANLLVATSGGYAKQTSLGEYPVQGRGGKGVLTAKIVSTRGGLVGALVVSPDDQ 678

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  +  N  +L      +    R   GVRL   + G     + 
Sbjct: 679 LYAITSNGGVLRTVARDVRRAQRQTMGVRLIDLEAGVQVVGVA 721


>gi|1495800|emb|CAA65021.1| DNA topoisomerase IV C subunit [Streptococcus pneumoniae]
          Length = 620

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 193/625 (30%), Positives = 343/625 (54%), Gaps = 20/625 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +    PK  +   +  TE Q +AI
Sbjct: 360 RSPFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADPKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKNFATP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S     L  +  ++ 
Sbjct: 478 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           D L     A TT  +L+ ++ G     P   L   R       L   + + +        
Sbjct: 534 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYV 593

Query: 607 ----VYDSTCKLLVVSSKGNAFIVE 627
                +D        +  G    VE
Sbjct: 594 EVLDQFDDATTYFAATRLGQIKRVE 618



 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGD 659
           +I TA +       + V+  G           A+T      +    ++++  V    T  
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAAST---LEEIGKRDDDRLIFVQSAKTTQ 546

Query: 660 HVAVVGENRKLL---IFSIDQIP 679
           H+ +      ++   I  +  I 
Sbjct: 547 HLLMFTSLGNVIYRPIHELADIR 569


>gi|300854106|ref|YP_003779090.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
 gi|300434221|gb|ADK13988.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
          Length = 954

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 216/672 (32%), Positives = 355/672 (52%), Gaps = 31/672 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N+    + N+  + +  A+ + YL YA+   K+RA+PD+RDG KPVHRRII+    +   
Sbjct: 4   NTVIPKDNNIIKIPIEEAMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRIIYGSYMLKAF 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  R P+I G GN+G+ DGDSAA
Sbjct: 64  PDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRMPIIDGHGNWGSQDGDSAA 123

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T +A  +++ +++  V+  D Y+  + EP V P+++PNLL NG  GIAVG+
Sbjct: 124 AMRYTEARLTPIAMEMIRDIEKGVVNMVDNYSGSEKEPEVLPARYPNLLVNGAFGIAVGL 183

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN++E+ +A +A IDN +I++E+L+ YI GPD PTGG I+  ++S++ +Y  G 
Sbjct: 184 ATNIPPHNLREVIDATVAYIDNRDITVEELMNYIKGPDLPTGG-IIIGKKSMISAYETGE 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E++  G   IV+TE PY+  K++L++ I+E+   KR    +  + DIRD
Sbjct: 243 GKVTLRAKTSIEKLDSGRLGIVITEFPYRRSKAKLLQVISEMTADKRYARALEPISDIRD 302

Query: 304 ESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES       +    +S D      +++ +   +D++     NM  L     P  M L  I
Sbjct: 303 ESDRSGIRAVIEFKKSTDMKLAQKILKYLLKKTDLQCNISFNMVALGD-GKPITMGLKLI 361

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VM 417
           LK ++ +++E++ +R+   ++   +R  I++G + A   +DEII  IR+    K     +
Sbjct: 362 LKYYVEYQKEIITKRTKRELEEAKKRFHIVEGFIKALGIMDEIIKTIRSSKSKKDAASNL 421

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + +F  T  Q +AIL L L  L  LE    + E + LL   +K+  +L S K+    I  
Sbjct: 422 MEQFDFTYPQAEAILELMLYRLTGLEIDSFEKEHEKLLKVIKKLTKILESEKEILKVIKK 481

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ EV E +        RRT   E            +I  E I + +S  G+I+     S
Sbjct: 482 ELIEVGEKYGD-----DRRTAIVE-EDEKAKIDVDEIIIDEDIVITMSKEGYIKRTSLKS 535

Query: 538 VDLSALH-----FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
            + S+       ++EGD  +  +++ T D ++  +  G  Y +   ++   +   +  +L
Sbjct: 536 YNRSSGKVEDIEYREGDFNEYFINSSTKDTLMFFTDSGDMYRIRGMDIPEFKWKEKGEKL 595

Query: 593 LIDLNHNQ----DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              +         I   +    ++     +  +S G          + N  K    LK+ 
Sbjct: 596 DNLIKGIDLEKNHITAVYSIKDFNLQKDFVFFTSIGGIKRTGIESFVTNYTK-LMALKLK 654

Query: 646 SEEKMKLVVKVT 657
           + EK+  V  V 
Sbjct: 655 NGEKLIGVELVD 666



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 69/209 (33%), Gaps = 18/209 (8%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRG---HGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             +++  IL+ + DG+  ++PA  L +        + +   ID+ +   I++   +D   
Sbjct: 749 FTNSSSYILIFTLDGEVLSIPAFMLQNVDNSGIDIKVLMKNIDVGNILKIISVEDFDCG- 807

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKG-KTFLKVSSE-EKMKLVVKVTGDHV--AVVGENR 668
            +   +  G        E       G  T  K   + + +  V     + +   ++ E  
Sbjct: 808 YVYFFTQYGMVKKTALMEFKQI--AGCSTAYKFKDKKDSLVNVEYSDKEEIEIFLITERG 865

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT----WIDSAGRSYNRSE 723
             + F  + +  M +   GV   S K+       CF I    +        + +      
Sbjct: 866 MGIKFKANTVNTMGKLAAGVTAISLKEDDKV-AYCFLIDGNDSKDYKLNLISEKGNKEQI 924

Query: 724 NDLLGWLGKRGGVGS--LVPKGFPRSGKF 750
           N     L  R G G   ++     +  K 
Sbjct: 925 NVKDVVLQNRAGRGKSIMLIVMDDKVKKV 953


>gi|291457735|ref|ZP_06597125.1| DNA gyrase subunit A [Bifidobacterium breve DSM 20213]
 gi|291380788|gb|EFE88306.1| DNA gyrase subunit A [Bifidobacterium breve DSM 20213]
          Length = 906

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 224/787 (28%), Positives = 362/787 (45%), Gaps = 69/787 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L  
Sbjct: 13  DPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG
Sbjct: 192 TNLATHNLGEVVNAAKFLMAHPDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   
Sbjct: 251 TLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP  ++  +F  + ++  F +N   L     P  M L  +L+ W+ H
Sbjct: 311 NGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVD-GRPHTMGLKEMLQVWVDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           RR V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR  D        +++ F L 
Sbjct: 370 RRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKTRLMAVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   ++++E D+L    E++  +L S +   + +  E+ E  +
Sbjct: 430 EVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDHVVTSEMDEAVD 489

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT   +       T   A        +  S    ++S  + S   + + 
Sbjct: 490 KWGSP-----RRTVLLDADPDGTLTPVVAQGS-GTSGISKSALEAVKSATTISSAEADVA 543

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT----LPAGNLLSGRGHGEAIQLLIDLNHNQ 600
                + K    +  T  + +             L A    S      +     +  H+ 
Sbjct: 544 AAAAAAKKTGEQSALTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNSRSASDERLHDD 603

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-------NTRKGKTF---LKVSS---- 646
            I T F   +     +V+S G   +    ++ A       + + G      + ++     
Sbjct: 604 QITTIFRTSTRATYGLVTSAGRLVLAHVVDLPALPASATLSLQGGVQADDLISMTESTDP 663

Query: 647 --EEKMKLVVKVT---------GD-----------HVAVVGENRKLLIFS------IDQI 678
              E++   + +          GD            +A+   N  +  ++      +D  
Sbjct: 664 VRGERVVTAIAMEQSADNGENGGDGETTAEAKPLPSLAIGTRNGVVKRWNREAPTTMDSW 723

Query: 679 PEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           P             KDG           +      S+  S   + +        R   G 
Sbjct: 724 PV---------IDVKDGDEVVFAAVAENDDRLVFVSSDSSL-LTFDAKNVRPQGRTAGGM 773

Query: 739 LVPKGFP 745
              K   
Sbjct: 774 AGIKLAE 780



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 14/168 (8%), Positives = 33/168 (19%), Gaps = 30/168 (17%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLI 672
           L + +  G             T      + V   +++        D  +  V  +  LL 
Sbjct: 700 LAIGTRNGVVKRWNRE--APTTMDSWPVIDVKDGDEVVFAAVAENDDRLVFVSSDSSLLT 757

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGIS--------------------------DVICFKI 705
           F    +    R   G+      +G                               +   +
Sbjct: 758 FDAKNVRPQGRTAGGMAGIKLAEGAHVMAFNVVPAGKVAWTYEEGENGLTSGAGAVVLTV 817

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +        +     +     R   G    +        + +
Sbjct: 818 AGDEDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTLILA 865


>gi|308235538|ref|ZP_07666275.1| DNA gyrase subunit A [Gardnerella vaginalis ATCC 14018]
          Length = 580

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 199/551 (36%), Positives = 315/551 (57%), Gaps = 19/551 (3%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
              + ++   +    VK + L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM
Sbjct: 28  QESDNTDYGLMKGARVKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAM 87

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G      + K +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+ 
Sbjct: 88  YDGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSP 147

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D AAA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++
Sbjct: 148 GDDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSA 207

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN++E+ +     +D+P+ S  +    L++ I GPDFPTG  I+   +
Sbjct: 208 GIAVGMATNIPPHNMREVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATIL-GHK 266

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++YR GRG   +RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  
Sbjct: 267 GIEQAYRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQG 325

Query: 298 LEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + D+RDE++    + ++    R   P +++ +++  S ++  F  NM  L    VP+ + 
Sbjct: 326 IADMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVD-GVPRTLS 384

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           LD  ++ W++H+ EV+ RR+ +  +  + R  IL+G L A   IDE++A+IR+       
Sbjct: 385 LDAFIRHWVSHQLEVIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTA 444

Query: 417 M---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
               ++   + + Q DAIL ++LR L  LE  +I  E + L+ + E  + +L S ++Q  
Sbjct: 445 RTGLMNLLDVDDVQADAILAMQLRRLAALERQKILDEHEELMRKIEDYNDILASPERQRK 504

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            +  E+ E+   +        RRT     S        + +I +E + V ++  G+I+  
Sbjct: 505 IVGDELDEIVAKYGDE-----RRTRILPFSGEMN---VEDLIAEENVVVTVTRAGYIKRT 556

Query: 534 KSHSVDLSALH 544
           K+         
Sbjct: 557 KADEYRAQHRG 567



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 9/38 (23%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           I E    +      Y +           RGG G     
Sbjct: 538 IAEENVVVTVTRAGYIKRTKADEYRAQHRGGKGIKALN 575


>gi|302566244|pdb|3NUH|A Chain A, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold
           That Plays A Critical Role In Gyrase Function
          Length = 525

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 213/522 (40%), Positives = 301/522 (57%), Gaps = 45/522 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA S I  RA+PD+RDG KPVHRR+++A + +G D+  A+KKS
Sbjct: 7   EITPVNIEEELKSSYLDYAXSVIVGRALPDVRDGLKPVHRRVLYAXNVLGNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRXAQPFSLRYXLVDGQGNFGSIDGDSAAAXRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++A  +   ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVG AT+IP HN
Sbjct: 127 LAKIAHELXADLEKETVDFVDNYDGTEKIPDVXPTKIPNLLVNGSSGIAVGXATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    LA ID+ +ISIE L E+I GPDFPT   I+  R  I E+YR GRG   +RAR
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLXEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRAR 245

Query: 256 WCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++ 
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGXRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++  F +N   L     P++  L  I+  ++ HRREV+ R
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINXVAL-HHGQPKIXNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R+ F ++    R  IL+ L +A  NID II +IR+   P                     
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAXL 424

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                             V    + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             ++  +L S  +    I  E+  V+E F       +RRT  
Sbjct: 485 IAELLRILGSADRLXEVIREELELVREQFGD-----KRRTEI 521


>gi|269115286|ref|YP_003303049.1| Topoisomerase IV subunit A [Mycoplasma hominis]
 gi|117582117|gb|AAC33842.2| topoisomerase IV subunit [Mycoplasma hominis ATCC 23114]
 gi|268322911|emb|CAX37646.1| Topoisomerase IV subunit A [Mycoplasma hominis ATCC 23114]
          Length = 933

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 203/744 (27%), Positives = 366/744 (49%), Gaps = 33/744 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D        V EN+   ++   + +R+  Y+   I++RAIPD RDG KPV RRI+++
Sbjct: 1   MKKDR-KEEIQEVTENIIEKNMADIMSDRFGRYSKYIIQQRAIPDARDGLKPVQRRILYS 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L     FKKSARIVG+VIG+ HPHGD S+Y++LVR+AQ +   +PLI   GN G+
Sbjct: 60  MWNLHLKNSEPFKKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKSNFPLIEMHGNKGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           ID D AAA RYTE+R+ +++EL+L+ +D   V     +++ + EP+V P+ FPNLL NG 
Sbjct: 120 IDDDPAAAMRYTESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIVLPALFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIA G AT IP HN+ E+ +A +ALI NP ISIE+L E + GPDFPTG  I+     I 
Sbjct: 180 KGIAAGFATEIPPHNLGEVIDATIALIKNPTISIEELSEIVKGPDFPTGA-IINGINEIK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWC---IVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
           ++   G+G   + +++      +       I + EIP+ V KS+L+  I  + I K+I  
Sbjct: 239 KALSSGQGRITISSKYHYVYDKKDESKIIGIEIIEIPFGVVKSKLVADIDAIAIDKKISG 298

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           ++++ D++  +   +        + D ++  +   +++   +  NM  +     P ++ L
Sbjct: 299 IKEVLDQTDRNGISIFIQLEDGANADAIIAYLMNKTELSISYSYNMVAID-NNRPVILNL 357

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
              L  +L+H +EV     ++ ++    R+EI++G +      DE+I +I+  D  K  +
Sbjct: 358 YSALIAYLSHLKEVNINGINYDLKKFKLRLEIVEGFIKVAEISDEVIHLIKESDNSKKGV 417

Query: 418 ----VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
               +++F  +E Q  AI  LRL  L ++++ + + E  NL  + E  + LLN   +   
Sbjct: 418 ILALMNKFKFSELQATAIAELRLYKLSRMDQIEFQEEKKNLEIQIENCNKLLNDKWEFNQ 477

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            +  ++ E+K  +SK       R T     + DK    + + + E   + I+  G+ + +
Sbjct: 478 YLIKQLLEIKNQYSKP------RLTEISDQKIDKEIDHKLLTKNEDFYLYITKDGYYKKI 531

Query: 534 KSHSV---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGE 588
                   +LS    KE D++      ++  +IL  +  G  + +        + +  G+
Sbjct: 532 SLKVYTSNELSTFKLKEEDNVFYFDKVNSLSKILFFTNLGNYFIIDCHLFKDCNWKDLGQ 591

Query: 589 AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKV 644
            I  ++ L  ++ I+       +++    +++S  G A  V   +    +  K KT +  
Sbjct: 592 HISSIVALESSEKIIRVIEITSFNNYANFILMSKLGYAKKVNLRDFENKSSLKTKTCMSF 651

Query: 645 SSE-EKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMS---RGKGVRLQ--SYKDGGI 697
             + +++        +  + ++  N    + S +++       + +G+RL    YK   +
Sbjct: 652 KDDNDELIDAQISNDEKMLFILLNNGMYHLVSENELKV-GISLKARGIRLLLNLYKHPQL 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNR 721
                  + +    I      Y +
Sbjct: 711 QVSGFITVSKYNNIIYLTQGGYIK 734


>gi|71894081|ref|YP_278189.1| DNA topoisomerase IV subunit A [Mycoplasma synoviae 53]
 gi|71850869|gb|AAZ43478.1| topoisomerase IV subunit A [Mycoplasma synoviae 53]
          Length = 860

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 198/761 (26%), Positives = 362/761 (47%), Gaps = 48/761 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S   + E +   S+   +EER+  Y+   I  RAIPD+RDG KPVHRRI+++M  +GLDF
Sbjct: 2   SKKEIIEKIITKSVDKIMEERFETYSKYVISNRAIPDVRDGLKPVHRRILYSMYALGLDF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              FKKSARIVG+VIGK HPHGD SVY++++ LAQ +    PL+S  GN G+ID D  AA
Sbjct: 62  DKKFKKSARIVGDVIGKYHPHGDTSVYNAMINLAQWWKMNIPLLSMHGNIGSIDDDKQAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE ++ ++A  I+  + +  V F   +++ ++EP+V PS FPNLL NG+ GIA+GMA
Sbjct: 122 MRYTEVKLAKIANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLVNGSRGIAIGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR- 247
           T +P HN+ EI +A +  I +P+ S  +L  +++GPDFPTGG +++  + I E+   GR 
Sbjct: 182 TEMPPHNLGEIIDACVYKIKHPKASYSELSNFVLGPDFPTGG-VIKGTKGIAEALENGRN 240

Query: 248 --GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
                ++  ++ +      +  I +TEIPY V K +L+ +I  +I  K I  + +I+D S
Sbjct: 241 EKNKIKLFCKYEIYT-KGKNKFIEITEIPYGVVKVKLVYEIDLIIQNKLIDGIIEIKDRS 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   +L   + + + + ++  +F  + M+  +    N++     P +M L+ ++  ++
Sbjct: 300 DRDGINILITLDINSNEESILNYLFSKTQMQITYSY-NNIVIDNNSPTLMNLENLISSYI 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII----AIIRNEDKPKPVMVSRF 421
           AH + V     ++ +     R+EI+ G +       ++I        ++      ++  F
Sbjct: 359 AHIKNVKTLSLNYDLNKAKVRLEIINGFIKVSEITSQVIELIRKTQGSKMGVVNNLIQVF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           + T+ Q ++I  LRL  L + ++     E   +      I++LLN+ K+  N +  EI+ 
Sbjct: 419 NFTKLQAESIAELRLYKLSQTDKEIYLKEKVEVKETINIIENLLNNEKEFNNFLINEIKA 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           +K+ FS       R+T   E            + E+  I V IS  G+I+      ++ +
Sbjct: 479 IKKEFSVP-----RKTQIEEKDFEVSYNKLDLVKEEI-INVSISKNGFIKRFSDKVLENN 532

Query: 542 ALHFK---EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI---D 595
                   E D+L      +T + +L  +  G    +    +   +       + +   D
Sbjct: 533 EWKNYALKEKDNLVFFSKVNTVNFLLCFTNLGNYVIVAIYQIQEVKWKDLGNNINLFASD 592

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK-TFLKVSSEEKMK 651
           +  +++IV+      ++    +++ + +G    V   + + +    K T + ++ ++ + 
Sbjct: 593 IRPDEEIVSVIEVSDFEENLSVMLGTKQGYFKRVMLKDFLVSRFTKKYTAMPLNEDDYLI 652

Query: 652 LVVKVT-GDHVAVVGENRKLLIFSIDQIPEM---SRGKGVRLQ------SYKD------G 695
                    ++  + EN  +  FS  +I  M   ++ +G +           +      G
Sbjct: 653 KAKLTNLDSYLVAITENSIISKFSESEI--MFYSTKARGSKAIYFSVGDKLSNFTIASYG 710

Query: 696 GISDVICFKIC----EGLTWIDSAGRSYNRSENDLLGWLGK 732
                    +          + +      R+  D    L  
Sbjct: 711 DEIFAFSSDLNYFYFNEADIVLTPKNIKGRNIFDKKYKLQN 751


>gi|163814199|ref|ZP_02205591.1| hypothetical protein COPEUT_00353 [Coprococcus eutactus ATCC 27759]
 gi|158450648|gb|EDP27643.1| hypothetical protein COPEUT_00353 [Coprococcus eutactus ATCC 27759]
          Length = 758

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 207/777 (26%), Positives = 363/777 (46%), Gaps = 70/777 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  V     + + Y+ Y++S I ERA+PD+RDG KPV RRI++++  +        
Sbjct: 1   MSEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLDGLA-GSDKPH 59

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y+ LV +AQ +    PL+   GNFG +DG  AAA RYT
Sbjct: 60  RKCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGAVDGSGAAAMRYT 119

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+++  E + ++ +      F   ++  ++EP   P + PN+L +G++GIAVGMAT+I
Sbjct: 120 EARISKYTEDVCMKDLPFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A +++PEI +E LL+ + GPDF TGGII  + E +   Y  G G  +
Sbjct: 180 PTHNLGEVIDATVAYLNDPEIELEDLLKLMPGPDFATGGIINATPEELYNVYATGLGKIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQ--KSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           VR +  V ++G G   I VTE+PY +    ++ ++ +AEL+  + +P + DI D   ++ 
Sbjct: 240 VRGKVEVRDIGYGRKSICVTELPYTMIGGTAKFLDTVAELVRNRELPAVVDIADRGDKNG 299

Query: 310 RIVLFPKNRSLDPDLLMESI---FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +     +    + +   I   +  + +E  F +N+N ++    P+VM L  ILK +  
Sbjct: 300 ECLCIDVKKGTSDEEIQNIINILYKKAALEDTFGVNINCIN-NGKPEVMGLKKILKVYTD 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------- 419
            +  +   +    +   +   EI  GLL A   ID II I+R   K              
Sbjct: 359 FKYGLYDTKYRKLLAQQEEIREIKMGLLTAVDCIDLIIEILRGSTKVADAKACLMHGDTS 418

Query: 420 --------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                             TE Q DAIL +RL+ L  LE   +K EL +     +K   L+
Sbjct: 419 NVKFRFKGSEADAKFLCFTEKQADAILAMRLQKLIGLEINALKKELSDAEKLIKKYTRLM 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S      Q+  ++ E+K  ++       RRT            +++A +    + V++ 
Sbjct: 479 ESRDAMKQQMIDDMLEIKAKYAIP-----RRTQI---HNYGTVVVKKAEVVATDVAVLLD 530

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
              +I+ + ++  + +    +     + A+     DRI + + + + YT+   +++  + 
Sbjct: 531 RFYYIKVVDANVYEKNIE--QINRDYRFAVKCQNLDRIAVFADNNQVYTIKVADIIKLQA 588

Query: 586 HGE------------------AIQLLIDLNHNQDI--VTAFVYDSTCKLLVVSSKGNAFI 625
                                 +    ++N +++I  +    +  T KLL VS +G A +
Sbjct: 589 KKNTSKKGGGSLIGRLADKGIQVFEFCNMNGDENILFMDCIEHFVTDKLLFVSKQGLAKV 648

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           V+ S      R         + + +  +     GD +    E    +   I +IPE  +G
Sbjct: 649 VDGSAFDTTRR---AANASKAGDDIIYIGKFSEGDFIIAQSEKGYYIRVDISEIPEKGKG 705

Query: 685 -KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
             GV+L + +   + + +          +      + R +       GKRGG GS +
Sbjct: 706 AAGVKLINLEGDDVLESVFVGSTRDTFKVGDNEIIFTRVKP------GKRGGKGSKL 756


>gi|237743165|ref|ZP_04573646.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
 gi|229433461|gb|EEO43673.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
          Length = 431

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 199/432 (46%), Positives = 289/432 (66%), Gaps = 5/432 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKK
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L+ +D++ +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP H
Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA+IDN +I I +L+ YI GPDFPTG II   R  I+E+Y+ GRG  +VR 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIID-GRAGIIEAYKTGRGKIKVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L 
Sbjct: 241 KVDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ R
Sbjct: 301 EVKKGEEPELVLNKLYKYTDLQTTFGVIMLSLV-NNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419

Query: 432 LNLRLRSLRKLE 443
           L+++L+ L  LE
Sbjct: 420 LDMKLQRLTGLE 431


>gi|12045056|ref|NP_072866.1| DNA topoisomerase IV, A subunit [Mycoplasma genitalium G37]
 gi|1352714|sp|P47446|PARC_MYCGE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3844802|gb|AAC71422.1| DNA topoisomerase IV, A subunit [Mycoplasma genitalium G37]
 gi|166078896|gb|ABY79514.1| DNA topoisomerase IV, A subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 781

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 195/726 (26%), Positives = 360/726 (49%), Gaps = 20/726 (2%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                N+   ++       +  YA   I++RA+PDLRDG KPV RRI++ M +MGL    
Sbjct: 2   DQKNNNLFQKAIEEVFAVSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPTT 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGE++GK HPHGD S+YD+++R++Q +   +  +S  GN G++DGD+AAA R
Sbjct: 62  PYKKSARAVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++     +L+ +D+  V F + +++ + EP V P+  PNL  NG SGIA G AT+
Sbjct: 122 YTETRLSLYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           I  HN  E+ ++    ID P   ++++L+ + GPDFPTGG +   +  + + Y+ G+G F
Sbjct: 182 IAPHNTNELLDSLCLRIDQPNCELKQILKIVKGPDFPTGGNVYFEKS-LSDIYQAGKGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            ++A++ V +       I +T+IPY+  K+ ++++I E+I   ++  +E + D S  +  
Sbjct: 241 IIQAKYEVNK---NLNQIEITQIPYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGI 297

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++      L  + +M  +F  + ++  F L  N +   R P  + L   L  +L    E
Sbjct: 298 RIIIKHKDFLPAEKIMAFLFKHTQLQVNFNL-NNTVIANRFPIQIGLLSYLDHFLKFCHE 356

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           ++  ++ + ++   +R+EI+ GL+ A   ID+II +IR+       +  ++  F  T NQ
Sbjct: 357 LIINKAKYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLIDNFKFTFNQ 416

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++LRL  L   + +++  E + L       + L+ S K +   +  +    K+ F 
Sbjct: 417 AEAIVSLRLYQLTNTDIFELNQEQNELEKTVISSEQLIASEKARNKLLKKQFEGYKKQFH 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           +     +RR+  C      K    + +  K    ++     + +   +  +  +     E
Sbjct: 477 Q-----QRRSQICGFINQKKVEESELIENKTYGVLITKAGNYHKFESNQLLKSTTDFKSE 531

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            D++  A     TD+I ++++ G    +P   L     +  A  +       +     FV
Sbjct: 532 SDTIIFAQTIANTDQIFIVTSLGNIINIPVYKLAFNSKNKLASLVSKKPILLEYETIVFV 591

Query: 608 Y---DSTCKLLVVSSK-GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA- 662
                    +LV++SK G    ++ +++     K    + +  ++ +        D +  
Sbjct: 592 GTMNSVNQPILVLTSKLGMVKRIDLTKLNIKPLKATLCISLRDKDHLVSAFLQQDDKLIC 651

Query: 663 VVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYN 720
           +V ++    +F  ++IP + S+G GV+    K +  I  V+ F+  E L  I S G   N
Sbjct: 652 LVSDHNYYTVFHTNEIPLISSKGMGVKGMKLKLEDQIKFVVAFEANEPLVMICSDGSVIN 711

Query: 721 RSENDL 726
             + +L
Sbjct: 712 LKQTEL 717


>gi|295094763|emb|CBK83854.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Coprococcus sp. ART55/1]
          Length = 758

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 208/777 (26%), Positives = 364/777 (46%), Gaps = 70/777 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  V     + + Y+ Y++S I ERA+PD+RDG KPV RRI++++  +        
Sbjct: 1   MSEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLDGLA-GSDKPH 59

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y+ LV +AQ +    PL+   GNFG +DG  AAA RYT
Sbjct: 60  RKCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGAVDGSGAAAMRYT 119

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+++  E + ++ +      F   ++  ++EP   P + PN+L +G++GIAVGMAT+I
Sbjct: 120 EARISKYTEDVCMKDLPFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A +++PEI +E LL+ + GPDF TGGII  + E +   Y  G G  +
Sbjct: 180 PTHNLGEVIDATVAYLNDPEIELEDLLKLMPGPDFATGGIINATPEELYNVYATGLGKIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQ--KSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           VR +  V ++G G   I VTE+PY +    ++ ++ +AEL+  + +P + DI D   ++ 
Sbjct: 240 VRGKVEVRDIGYGRKSICVTELPYTMIGGTAKFLDTVAELVRNRELPAVVDIADRGDKNG 299

Query: 310 RIVLFPKNRSLDPDLLMESI---FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +     +    + +   I   +  + +E  F +N+N ++    P+VM L  ILK +  
Sbjct: 300 ECLCIDVKKGTSDEEIQNIINILYKKAALEDTFGVNINCIN-NGKPEVMGLKKILKVYTD 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------- 419
            +  +   +    +   +   EI  GLL A   ID II I+R   K              
Sbjct: 359 FKYGLYDTKYRKLLAQQEEIREIKMGLLTAVDCIDLIIEILRGSTKVADAKACLMHGDTS 418

Query: 420 --------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                             TE Q DAIL +RL+ L  LE   +K EL +     +K   L+
Sbjct: 419 NVKFRFKGSEADAKFLCFTEKQADAILAMRLQKLIGLEINALKKELADAEKLIKKYTRLM 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S      Q+  ++ E+K  ++       RRT            +++A +    + V++ 
Sbjct: 479 ESRDAMKQQMIDDMLEIKAKYAIP-----RRTQI---HNYGTVVVKKAEVVATDVAVLLD 530

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
              +I+ + ++  + +    +     + A+     DRI + + + + YT+   +++  + 
Sbjct: 531 RFYYIKVVDANVYEKNID--QITKDYRFAVKCQNLDRIAVFADNNQVYTIKVADIIKLQA 588

Query: 586 HGE------------------AIQLLIDLNHNQDI--VTAFVYDSTCKLLVVSSKGNAFI 625
                                 +    ++N +++I  +    +  T KLL VS +G A +
Sbjct: 589 KKNTSKKGGGSLIGRLADKGIQVFEFCNMNGDENILFMDCIEHFVTDKLLFVSKQGLAKV 648

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           V+ S      R           + +  + K+  GD +    E    +     +IPE  +G
Sbjct: 649 VDGSAFDTTRR---AANASKVGDDIIYIGKISEGDFIIAQSEKGYYIRVDAAEIPEKGKG 705

Query: 685 -KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
             GVRL + +   + + +     +    +      + R +       GKRGG GS +
Sbjct: 706 AAGVRLINLEGDDVLESVFVGSTKDTFKVGDNEIIFTRVKP------GKRGGKGSKL 756


>gi|331001825|ref|ZP_08325347.1| hypothetical protein HMPREF0491_00209 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412799|gb|EGG92182.1| hypothetical protein HMPREF0491_00209 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 745

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 205/763 (26%), Positives = 362/763 (47%), Gaps = 56/763 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ YL Y++S I  RAIPD RDG KPV RR+++ MSE+ +      
Sbjct: 1   MAEKILRTEYSEEMQKSYLDYSMSVITARAIPDARDGLKPVQRRVLYDMSELRIFSDRPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV L+Q F +   LI G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALIDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EA++ +  E + L+ +D+  VDF   Y+E + EP V P + PNLL NG  GIAVGM+TSI
Sbjct: 121 EAKLAKFTEEVYLKDLDK-TVDFISNYDETEKEPAVLPVRVPNLLINGAEGIAVGMSTSI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+C   +A I N  I  + LLE + GPDFPTGGII  +++ + + Y  G G  +
Sbjct: 180 PTHNLLEVCNTCIAYIKNRNIDTKGLLEILHGPDFPTGGIIA-NKKDLFDIYDTGNGKLK 238

Query: 252 VRARWCVE--EVGRGSWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +  VE          ++++EIPY +     ++ +  +A L+ +K++  + DI ++S 
Sbjct: 239 IRGKIEVELGRKKSDKDKLIISEIPYTMIGAGINKFLVDVANLVESKKLSDVVDISNQSD 298

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    +  D + +   ++  + +E  F +NM  +     P+++ L  ILK +L 
Sbjct: 299 KNGTRIVLELKKDADIEKIKNILYKKTKLEDTFGVNMLAIVD-GRPEILSLRDILKNYLD 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------- 412
            + E+  ++ +  +     + EI +GL+ A   ID IIAI+R                  
Sbjct: 358 FQYEITTKKYNILLNKELEKKEIQEGLIRAVDVIDIIIAILRGSKNLTQAKKCLISGDTT 417

Query: 413 -------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                         + S TE Q  AIL++RL  L  LE   +  +    L   E  +++L
Sbjct: 418 GINFKVKTFEKDAKKLSFTEKQAQAILDMRLYKLIGLEIEALLKDNAATLKNIEDYENIL 477

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
              K        ++ ++K  F+      +R+T   +   A +A   +  +  E +  V+ 
Sbjct: 478 KDHKNMDKLFIKDLEKIKRDFA-----LQRKTLIED---AKEAIYIEEPLASEEVIFVMD 529

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
             G+ +     + D +A                 TD++ + S  G  Y +   +L   + 
Sbjct: 530 KFGYCKVYDRGTFDKNAQA--VESENIYVFPVMNTDKVCIFSNTGILYKIKVIDLPLSKL 587

Query: 586 HGE--AIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             +   I  L   + + + +   V +       +L+++ KG    V   E   N ++   
Sbjct: 588 RDKGTPIDNLTKFDSSTEEILLAVSEDSMRGNSILMLTKKGFIKKVSCEEFKTNNKQ-VA 646

Query: 641 FLKVSSEEKMKLVVKVT---GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
             K+++++ +  V  ++      + ++ +   +L F+I ++ E  +  +G +  +     
Sbjct: 647 STKLTNDDVLIAVKMISSGINTDIFIISDAGYILRFNISEVNEFKKSTRGEKAMTLGYNE 706

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
               +      G   I     + N+ +         RG  G  
Sbjct: 707 YIKELYLLNDTGFVNISGKEIALNKVKP------SHRGYKGQK 743


>gi|15894906|ref|NP_348255.1| DNA topoisomerase IV subunit A [Clostridium acetobutylicum ATCC
           824]
 gi|15024586|gb|AAK79595.1|AE007672_2 DNA gyrase A subunit [Clostridium acetobutylicum ATCC 824]
 gi|325509043|gb|ADZ20679.1| DNA topoisomerase IV subunit A [Clostridium acetobutylicum EA 2018]
          Length = 954

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 211/669 (31%), Positives = 362/669 (54%), Gaps = 31/669 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N   + N+  + L  A+ E YL YA+   ++RA+PD+RDG KPVHRRII+    +     
Sbjct: 6   NIPKDSNIIKIPLEEAMPENYLPYAVEVARDRALPDVRDGLKPVHRRIIYGSYMLKAFPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSARIVG+++GK HPHGD SVY+S+V LAQ F  R+PLI G GN+G++DGDSAAA 
Sbjct: 66  KPYYKSARIVGDILGKYHPHGDSSVYESMVILAQNFTTRHPLIDGHGNWGSVDGDSAAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+T +A  ++  +D+D VD  D Y+  + EP V P+ +PNLL NG  GIAVG++T
Sbjct: 126 RYTEARLTPIALEMINDIDKDVVDMVDNYSGSEKEPSVLPAAYPNLLVNGAFGIAVGLST 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN++E+ +A L  IDN ++++ +L+E + GPD PTGG I+  + S++ +Y  G G 
Sbjct: 186 NIPPHNLREVIDAVLKYIDNKDVTVNELMECVKGPDLPTGG-IIIGKNSLIAAYETGEGK 244

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDES 305
             +RAR  +E +  G   IV++E PY+  K+++++ I+E+   K+    +  + DIRDES
Sbjct: 245 VTLRARTKIERLENGRLAIVISEFPYRRNKAKILQTISEMTADKKHAKILESISDIRDES 304

Query: 306 AEDVRIVLFPKNRSLDP---DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
                  +    +S D    + +++ +F  ++++     NM  L+    P+ M L  I+ 
Sbjct: 305 DRRGIRGVIEFKKSSDEDTVNKILKYLFKKTELQCNINFNMVALAD-GKPETMGLKTIIG 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419
            ++ HR++++ RR+   + A  +R  I++G + A   +DEII+ IR        +  +V+
Sbjct: 364 HYVNHRKDIVTRRTKHNLNAARKRFNIVEGFIKAIDIMDEIISTIRASKSKKDSENNLVA 423

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F     Q  AI+ L L  L  LE    K E D L    +K++ +L+  K+    +  E+
Sbjct: 424 KFGFNNEQATAIVELMLYKLTGLEIETFKKEYDELSKLIKKLEKILSDEKELLRVVKNEL 483

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
           +EV++ + +      RRT+  E          +     E I V +SN G+I+S+   +  
Sbjct: 484 KEVEKKYGE-----DRRTSIVEDDSE-AKIDVEEFTVVEDIVVTMSNDGYIKSVPKKTYL 537

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
               D+S + ++EGD  +  +  +T   +L+ + +G  Y L   ++   +   +  ++  
Sbjct: 538 RSNSDVSDIEYREGDFNRFLIETNTAHNLLMFTDEGNMYKLRGNSIPEYKWKEKGEKIDN 597

Query: 595 DLN----HNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            +       + I+  +  +       ++ ++ +G+       +      K    LK+  +
Sbjct: 598 LIKGIDLGKEKILNIYSVESLTEQKDIIFITDRGSLKKTSLDKFDTIYSK-IMALKLKKD 656

Query: 648 EKMKLVVKV 656
           EK+     V
Sbjct: 657 EKLIKAELV 665



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 102/311 (32%), Gaps = 15/311 (4%)

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
           SL+K    +  +    ++A K K D  L   +           +V        D   R  
Sbjct: 632 SLKKTSLDKFDTIYSKIMALKLKKDEKLIKAELVLRTREEGFIKVSTEKG--LDFTVREP 689

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
              E+ R        ++   + I                 ++ + +   +  S    +  
Sbjct: 690 LIEEMDRNKMGHQCISVCPMDRIVSSEFVENDDYRTFGIQINKNGIIKTKASSSGNYIDT 749

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHG-EAIQLLIDLNHNQDIVTAFV---YDSTCK 613
            T+  +L+   DG+   +P+    +         +L  + N N  I+       ++    
Sbjct: 750 TTSSTLLIFIDDGRVINIPSYMFKNMDDKVLNLSELYCEFNSNNKIIKTLSIEEFNENKF 809

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFL-KVSSEEKMKL---VVKVTGDHVAVVGENRK 669
           +   SSKG     + SE +    KG     K+ ++E M +   V +   + V ++ +   
Sbjct: 810 IYFFSSKGFVKKTKLSEFVE--SKGIEVCYKLRNKEDMLVNVDVSENEEEEVVLITKKAM 867

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLL 727
            + F    +  M +   GV   S  +  I++   F + E L   I  +  +         
Sbjct: 868 GIKFLSSSVSVMGKIASGVTGISLNEEDITE-YGFVVKENLNKIILKSKLNDKIEVEIED 926

Query: 728 GWLGKRGGVGS 738
             +  RGG G 
Sbjct: 927 IKVQNRGGKGK 937


>gi|166368730|ref|YP_001661003.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
 gi|166091103|dbj|BAG05811.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
          Length = 914

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 200/498 (40%), Positives = 298/498 (59%), Gaps = 17/498 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L    +   +L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     
Sbjct: 8   LASGQIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQSVY++LVR+ Q F  RYPL+SG GNFG+ID D  AA RY
Sbjct: 68  FRKCARVVGDVLGKYHPHGDQSVYEALVRMVQDFSSRYPLLSGHGNFGSIDNDPPAAMRY 127

Query: 132 TEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  + +  +L G+ E  V+F   ++    EPVV P++ P L+ NG SGIAVGMAT+
Sbjct: 128 TETRLAGIGDQAVLGGISEAIVNFSSNFDNSQQEPVVLPAQLPILILNGCSGIAVGMATN 187

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ E  +ALIDNP++S EKL+E I GPDFPTGG I++    I E+YR GRG  
Sbjct: 188 IPPHNLGEVVEGLIALIDNPDLSEEKLVEIIPGPDFPTGGEILDDT-GIREAYRTGRGII 246

Query: 251 RVRARWC----VEEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            VR        + E  R      IVVTE+P+QV K+  IEKIAEL+   ++  + DIRDE
Sbjct: 247 PVRGVAKTETIIIEGKRRRERTAIVVTELPFQVNKAAWIEKIAELVNLGKLEGIADIRDE 306

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   V+    R   P  ++ +++  + ++T F   +  L     P+ + L  +L+E+
Sbjct: 307 SNREGIRVVIELKRESQPQQVLAALYQQTALQTNFGAIILALVD-NQPRQLSLKQVLQEF 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---F 421
           L  R   L R+    +Q    R+ +++GLL+A  NID ++ I++N               
Sbjct: 366 LRFRETTLTRQYGDELQQASDRLHLVEGLLLALQNIDRVVDILKNAPDGTTAKYRFQAEL 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            +++ Q D+IL + LR L  LE  ++++E   L A+ +++++LL++ ++    +  E+R 
Sbjct: 426 GISDAQADSILAMPLRRLTGLERQKLETEATELQAKIQQLETLLHNRQEFLKSLKKELRS 485

Query: 482 VKEIFSKSTDLGRRRTTF 499
           +K+ F+       RRT  
Sbjct: 486 LKKKFAD-----SRRTKI 498



 Score = 94.5 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 60/146 (41%), Gaps = 5/146 (3%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRK 669
             +LL++S +G    +   E+     +G + +K+  ++++   +    G  +A+   + +
Sbjct: 713 NQELLLLSQQGRIKRLPIDELEGVGSRGLSLMKLKEDDRLYGAIFTHEGLDLAIATSSGR 772

Query: 670 LLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           +L + + +  +P MS+  +G+ +   + G      C  +      +  +G  Y +     
Sbjct: 773 VLRYPVREELLPMMSKSAQGLAILRLRYGEHL-AGCVSLPHRENLLLISGLGYGKRLAIE 831

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLS 752
              L + G +GS   +   +     +
Sbjct: 832 NLRLSQLGDLGSPALQFVNKQDSLAA 857


>gi|269219416|ref|ZP_06163270.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211209|gb|EEZ77549.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 558

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 191/504 (37%), Positives = 286/504 (56%), Gaps = 12/504 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +   +    E V  + +   +   +L Y+ S I  RA+PD RDG KPV RRI+  M +MG
Sbjct: 1   MPKISEPSAEKVIDIDVTQEMRTSFLEYSYSVIYARALPDARDGLKPVQRRILFQMGQMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS+R+VG+V+G+LHPHGD ++YD++VRLAQPF  R P+I G GNFG++D D 
Sbjct: 61  LRPDRGHVKSSRVVGDVMGRLHPHGDVAIYDAMVRLAQPFTLRLPMIDGHGNFGSLD-DG 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM   A  ++  +DED VD    Y+    +P V P+  PNLL NG+SGIAV
Sbjct: 120 PAAPRYTEVRMAPAAMAMISSLDEDTVDMAPNYDNTLEQPEVLPAAIPNLLVNGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  L+ NP+  +E+++ ++ GPD P GG IV   E I E+Y  
Sbjct: 180 GMATNMPPHNLVEVIAAARCLLANPDADLEEIMRFVPGPDLPEGGKIV-GLEGIREAYAS 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F+ RA   +E V      IV TE+PY V   ++IEK+ + I AK++  +  I++ +
Sbjct: 239 GRGIFKTRATAHIENVTARKKGIVFTELPYLVGPEKVIEKLKDAINAKKVQGVTGIQNLT 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++       +P+ ++  ++  + +E  F +N   L  G  PQ + L  +L+ +
Sbjct: 299 DRHHGMRLVVEVKNGFNPEAVLLQLYRHTPLEDSFGINNVALV-GGQPQTLGLIELLRVF 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           L HR +V  RRS FR+    R + ++ GLL A +NIDE+IA+IR+ D     +  ++  F
Sbjct: 358 LDHRLDVTRRRSRFRLDKASRELHLVDGLLAAVVNIDEVIALIRSSDDAATARTRLMQVF 417

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL LRLR L K    +++     LL     ++ +LNS ++  + ++ E+ E
Sbjct: 418 DLTEPQAEYILELRLRRLTKYSVIELEQRRSELLEAIADLEDVLNSPERLRDLVSAELDE 477

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRA 505
           V            RRT   E   A
Sbjct: 478 VARAHGTP-----RRTVLLESDGA 496


>gi|227496006|ref|ZP_03926317.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
 gi|226834437|gb|EEH66820.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
          Length = 519

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 193/499 (38%), Positives = 288/499 (57%), Gaps = 12/499 (2%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           + +   ++  +    L   +   +L YA S I  RA+PD RDG KPV RRI+  M  MGL
Sbjct: 6   TTTPPPIDGEIVEQDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMGL 65

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                  KS+R+VG+V+G+LHPHGD ++Y++LVRLAQPF  R PLI G GNFG++D D  
Sbjct: 66  RPDRPHVKSSRVVGDVMGRLHPHGDVAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DGP 124

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+   A  +   +DED VDF   Y+   +EP V P+ FPNLL NGTSGIAVG
Sbjct: 125 AAPRYTEARLASPALALTADIDEDTVDFSPNYDYTLTEPDVLPAAFPNLLVNGTSGIAVG 184

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++P HN+ E+  AA  LI +PE S+E L+ ++ GPD PTGG+IV   + I E+YR G
Sbjct: 185 MATNMPPHNLVEVVSAARHLITHPEASLEDLMAFVPGPDLPTGGMIV-GLDGIREAYRTG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG F  RA   +E +      IVVTE+PY V   ++I +I + + AK++  + D+ D + 
Sbjct: 244 RGKFLTRATARIENITPRKKGIVVTELPYLVGPEKVIARIKDAVSAKKLQGITDVADLTD 303

Query: 307 E-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++       +P+ ++  ++  + +E  F +N   L     P+ + L  +L  ++
Sbjct: 304 RKNGTRLVIGVKNGYNPEAVLAQLYKHTPLEDSFGINNVCLVD-GQPRTLGLRELLDVFV 362

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            HR  V+ RR+ FR+     R  +++GLLIA L+IDE+I ++R+ D     +  ++  F 
Sbjct: 363 RHRMTVVERRTRFRLGKRRERQHLVEGLLIAILDIDEVIQVVRSSDDAATARTRLMQVFD 422

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q   IL L+LR L K    +++ E D L  E E+++++L         ++ E+  V
Sbjct: 423 LSEAQASYILELQLRRLTKFSVIELEKERDELAREIEQLEAILADETLLRGVVSRELAAV 482

Query: 483 KEIFSKSTDLGRRRTTFCE 501
            E F        RRT   E
Sbjct: 483 AEEFGTP-----RRTVLLE 496


>gi|47459295|ref|YP_016157.1| DNA topoisomerase IV subunit A [Mycoplasma mobile 163K]
 gi|47458625|gb|AAT27946.1| topoisomerase IV subunit A [Mycoplasma mobile 163K]
          Length = 858

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 207/731 (28%), Positives = 353/731 (48%), Gaps = 30/731 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
              +++     SL   +  RY  YA   I++RA+PD+RDG KPV RRI+++M E+GL   
Sbjct: 3   TNELKDKFLLQSLDGIMSNRYGVYAKYIIQQRALPDVRDGLKPVQRRILYSMHELGLTSE 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             FKKSAR+VG+VIGK HPHGD S+Y+++VR++Q +    PLI   GN G+ID D AAA 
Sbjct: 63  KPFKKSARVVGDVIGKYHPHGDSSIYEAMVRMSQEWKMNVPLIQMHGNIGSIDDDPAAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++++ L+L  +  D V F   +++ + EP V P+ FPNLL NG  GIA G AT
Sbjct: 123 RYTEARLSKISSLLLSDIKSDTVSFSLNFDDSEKEPTVLPAFFPNLLVNGARGIAAGFAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ +  +A I NP I IE L   I GPDFPTGGII    + I E+   GRG 
Sbjct: 183 EIPPHNLGEVIDGIIAKIKNPNIKIETLNTIIKGPDFPTGGIIYG-IDGIKEAAFSGRGR 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + +++ V +       IV+TEIPY V KS+L+ +I E+ + K I  + ++RDE+  D 
Sbjct: 242 ITITSKYEVHK-----NQIVITEIPYGVVKSKLVRQIDEINLDKNIGGMNEVRDETNRDG 296

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++       D   +M+ +   ++++  +    N+      P +M L  +++ +L H +
Sbjct: 297 IKIVIDLEAGADASKIMKFLMQKTELQLYYSY-NNIAIHNNAPVLMNLHDLIQAFLDHVK 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----PVMVSRFSLTE 425
            +   + +F ++ + +R+EI++G +      D++I +IR  +  K      ++  F+ +E
Sbjct: 356 VIQTNKINFELEKLSKRLEIIEGFIKLTEISDQVIEMIRKSEGSKVGVVENLIKIFNFSE 415

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q ++I NLRL  L K +  +   E   L      + +LL+S  +   ++    +++K+ 
Sbjct: 416 IQAESIANLRLYRLSKTDVEEFIKEKQELETRINFLKTLLSSESEFNAELIKIFKDIKKT 475

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           ++        R T  +            +I+ E   V IS  G+I+       D + +  
Sbjct: 476 YATP------RKTEIKDQALKLDVSLSDLIQAEETFVGISRDGYIKRFNQKIHDSNEMQT 529

Query: 546 K---EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQ 600
               E D+L       TT ++L+ +  G   ++P         +  G  +     L  N+
Sbjct: 530 YLLKEDDALIFLSKTLTTGKLLIFTNQGNYISIPIFKIAEEKWKNLGIHLNDFATLLPNE 589

Query: 601 DIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANT-RKGKTFLKV-SSEEKMKLVVK 655
            ++     D   K   + +++ KG    V+  E   +   K    +K     +++     
Sbjct: 590 FLIKVLYVDDFSKDFSITLITKKGFGKKVQLPEFEVSRENKSYPAIKFKKDGDELLNAFI 649

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +V    ++  FS +       +  GV+  S               +  T + 
Sbjct: 650 TNDRLDILLVNTKLEVYKFSENDFKTYGIKAAGVK-ISDNATKFEISAAIAYSQNDTLVF 708

Query: 714 SAGRSYNRSEN 724
                + R  N
Sbjct: 709 LTESGHARKIN 719


>gi|153954761|ref|YP_001395526.1| DNA topoisomerase IV subunit A [Clostridium kluyveri DSM 555]
 gi|219855225|ref|YP_002472347.1| hypothetical protein CKR_1882 [Clostridium kluyveri NBRC 12016]
 gi|146347619|gb|EDK34155.1| GyrA2 [Clostridium kluyveri DSM 555]
 gi|219568949|dbj|BAH06933.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 953

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 216/675 (32%), Positives = 360/675 (53%), Gaps = 31/675 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N++   + N+  + +  A+ + Y+ YA+   K+RA+PD+RDG KPVHRRII+    +   
Sbjct: 4   NTSIPEDNNIIKIPIEEAMPDNYMPYAVEVAKDRALPDVRDGLKPVHRRIIYGAYMLKAF 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  + P+I G GN+G+ DGDSAA
Sbjct: 64  PERPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTKMPIIDGHGNWGSQDGDSAA 123

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T +A  +++ +++D V+  D Y+  + EP V P+++PNLL NG  GIAVG+
Sbjct: 124 AMRYTEARLTPIAMEMVRDIEKDVVNMVDNYSGSEKEPEVLPARYPNLLVNGAFGIAVGL 183

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN++E+ EAA A ID  +IS EKL+EYI GPD PTGG I+  R+S++ +Y  G 
Sbjct: 184 ATNIPPHNLKEVIEAACAYIDCEDISTEKLMEYIKGPDLPTGG-IIIGRQSLICAYTTGE 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E++  G   IV+TE PY+  K+RL++ I+E+   KR    +  + DIRD
Sbjct: 243 GKATLRAKTSIEKLDNGRLGIVITEFPYRRSKARLLQTISEMTADKRHIKALEPISDIRD 302

Query: 304 ESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES  +    +    +S D      +++ +   +D++     NM  L+    P  + L  I
Sbjct: 303 ESDRNGIRAVIEFKKSTDKNLAQKVLKYLLKKTDLQCNIFFNMVALAD-GKPVTLGLKDI 361

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VM 417
           LK ++ ++++++ RR+   ++    R  I++G + A   +DEII  IR+    K     +
Sbjct: 362 LKHYIKYQKQIIKRRTEKELEGAKVRFHIVEGFIKAIGIMDEIIKTIRSSKSKKDAASNL 421

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + +F  T  Q +AIL L L  L  LE    + E   LL   +K+  +L+S K+    I  
Sbjct: 422 MEKFEFTREQSEAILELMLYRLTGLEIVSFEKEHRELLKIIKKLTKILDSEKEILKVIKK 481

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+ E + +       R T       +     + ++  E I + IS   +I+      
Sbjct: 482 ELAEIAEKYGEE------RKTVIIEEEEEAKIDVKEILVDEDIVITISKEAFIKRISLKS 535

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
               S ++  + ++EGD  K  +++ T D I+  +  G  Y +   ++   +   +  +L
Sbjct: 536 YNRSSREVKDIEYREGDFNKYVINSSTKDTIMFFTDKGNMYKIKGMDIPEFKWREKGEKL 595

Query: 593 LIDLN----HNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              +       ++IV  +  D        +  ++       E +  +    K    L++ 
Sbjct: 596 ENIIKGIDLSEENIVAVYSIDDFSSPQDFIFFTNMAGIKRTETNAFVTKYTK-LMALRLK 654

Query: 646 SEEKMKLVVKVTGDH 660
            EE++  V  V  + 
Sbjct: 655 KEEELIDVKLVNRNE 669



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 69/193 (35%), Gaps = 10/193 (5%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ--DIVTAFVYDSTCK 613
             +++  IL+ +  G+ +++P+         G  I+ L+ ++      +++   +D    
Sbjct: 749 FTNSSSNILVFTVCGRVFSMPSFMFEQIESSGINIRELMGISAQDILKMISIENFDYG-Y 807

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGK-TFLKVSSEEK-MKLVVK-VTGDHVAVVGENRKL 670
           +   +  G     E +E       G  T  K  + E  +  V      + + ++ E    
Sbjct: 808 IYFFTKYGMIKRTELNEFKDI--NGWNTAHKFKNNEDFLVNVEYGKEKNEILLITEKGMA 865

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           + F  D I  M +   GV   + K +  +   +  +         ++ +   +       
Sbjct: 866 IKFQGDSINSMGKSASGVTAINLKGEDSVIYSMVMEEKANCKLNLTSVKGNKKQIKSKNI 925

Query: 729 WLGKRGGVGSLVP 741
            L  RGG GS V 
Sbjct: 926 ILQNRGGRGSNVM 938


>gi|294786988|ref|ZP_06752242.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|315226629|ref|ZP_07868417.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
 gi|294485821|gb|EFG33455.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|315120761|gb|EFT83893.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
          Length = 906

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 184/487 (37%), Positives = 276/487 (56%), Gaps = 7/487 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V++ +    L   +   +LAYA S I  RA+PD RDG KPV RRII+ M +M L  
Sbjct: 12  DPRTVKQKIVDTPLGEEMSTSFLAYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLTP 71

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQ F  R PL+ G GNFG++D D  AA
Sbjct: 72  DKPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQDFAMRLPLVDGHGNFGSLD-DGPAA 130

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  + + ++E+ VDF   Y+ +  EP V PS  PNLL NG SGIAVGMA
Sbjct: 131 SRYTEARLAPAALGMNESINEETVDFAPNYDNKLQEPTVLPSAIPNLLVNGASGIAVGMA 190

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+   A  L+ +P+ + + L+ YI GPD P GG I+  RE I E+Y  GRG
Sbjct: 191 TNMITHNLAEVVAGAKYLMAHPDATTDDLMHYIPGPDLPGGG-IIMGREGIKEAYESGRG 249

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
            F  RA   +E V      IVVTE+P+ V   +++E+I++ +  K++  +    D +   
Sbjct: 250 SFSTRATTHIENVTARKKAIVVTELPFMVGPEKVLERISDGVKNKKLDGISGAIDLTDRH 309

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DP  ++  +F  + +E  F +N   L  G  P  M L  +L  W+ H
Sbjct: 310 NGTRLVIEIKTGFDPHAVLGQLFKYTPLEDSFTINNVALV-GGRPHTMGLKELLDVWIQH 368

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGL---LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           RREV+ RRS +R +  + R+ ++ GL   LI    + E+I    N D  K  +++ F L 
Sbjct: 369 RREVITRRSQYRKRKAEERLHLVDGLLLALIDIDEVIEVIRSSDNADSAKTRLMAVFDLD 428

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+LRLR L K+   +++SE D+L     ++D +L S +++   +   +  V  
Sbjct: 429 EIQAQYILDLRLRRLTKMSRIELESERDDLQRAIAELDEILASDQRRDAVVIESMDHVVR 488

Query: 485 IFSKSTD 491
            +     
Sbjct: 489 DYGTPRR 495



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/167 (9%), Positives = 40/167 (23%), Gaps = 29/167 (17%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLI 672
           L + +++G             T    + + +  ++ +      T  D +  +  +  LL 
Sbjct: 701 LAIGTARGIVKRWNMD--SPTTMDSWSIIDLKDDDSLVFAAPATDADRLVFISSDSSLLT 758

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGIS-------------------------DVICFKIC 706
           ++ D +    R   G+      DG                              +   + 
Sbjct: 759 YTADNVRPQGRNAGGMGGIKLADGSRVLAFAVVPAGQLAWVPAQEEGDQAASGAVVVTVA 818

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +        +     L     R   G    +        L++
Sbjct: 819 GDAEALTGTDNGSAKVTPLELYPTKGRNTGGVRSQRFLKGQNSLLAA 865


>gi|157060396|gb|ABV03204.1| GyrA [Chlamydia trachomatis]
          Length = 436

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 191/434 (44%), Positives = 269/434 (61%), Gaps = 6/434 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGG I+   E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDK-NLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR     +            +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLE 443
           AIL LRL  L  LE
Sbjct: 423 AILELRLYQLTGLE 436


>gi|237732925|ref|ZP_04563406.1| DNA topoisomerase IV subunit A [Mollicutes bacterium D7]
 gi|229383994|gb|EEO34085.1| DNA topoisomerase IV subunit A [Coprobacillus sp. D7]
          Length = 614

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 188/612 (30%), Positives = 328/612 (53%), Gaps = 20/612 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M + G  +   ++KSA+ V
Sbjct: 1   MSLETIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLYSKPYRKSAKTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG  HPHGD SVYD++VRL+Q +  R PL+  QGN G+ID D AAA RYTEAR++ +
Sbjct: 61  GNVIGNYHPHGDISVYDAMVRLSQDWKMRVPLVDMQGNNGSIDNDPAAAMRYTEARLSAI 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +D+D V     +++ + EP V P+ +PNLL NG +GI+ G AT IP HN++E+
Sbjct: 121 AVELLKDLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIPPHNLEEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +  I  P  S+EKL+E+I GPDFPTG I+   ++ I+ +++ GRG   VR+   + 
Sbjct: 181 IDATIHRIKYPNCSLEKLMEFIKGPDFPTGAIVE-GKQGILNAFKSGRGKVIVRSTSEMI 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E       IV+TEIPY+V K+ L+ KI E+   + I  + ++RDES      ++    + 
Sbjct: 240 EEK-TMNKIVITEIPYEVNKAELVRKIDEIRFNRNIDGIIEVRDESDRTGLRIVIDLKKD 298

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           ++    +  ++  +D++  +     V    + P +M +  IL  ++AH+ +V+ R S   
Sbjct: 299 INVQNTLNYLYKNTDLQKNYNY-NMVAIKDKRPVLMGVIEILDGYIAHQIDVVTRSSIHD 357

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRL 436
           +   + R  I++GL+ A   +DE++  IR          +   ++  +E Q +AI+ L+L
Sbjct: 358 LNKANERKHIVEGLIKAISILDEVVKTIRQSKDKSDAKNNLIEKYGFSEKQAEAIVMLQL 417

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +   +++E   L      ++++LNS +     I  +++ +K+ +        R 
Sbjct: 418 YRLTNTDIVTLENENKELDNRIAYLNNILNSDEVLRKVIIDQLKGIKKKYPMPRLSKIR- 476

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSLKI 553
                    +    ++AMI  E I V I+  G+I+ + + S+   +      KE D L  
Sbjct: 477 -----DEVQEIKIDEKAMILSEDINVSITRDGYIKRISNRSIKASEGIPFGKKENDYLVS 531

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAFVYDST 611
              A+T D +LL +  G    +P   +   +     + +  L+ LN  + I+   +    
Sbjct: 532 MYQANTLDHLLLFTDAGNYLFIPVHKIEEFKWKDAGKHVSYLVKLNAGEKIIGTILVKDF 591

Query: 612 C---KLLVVSSK 620
                +++ + K
Sbjct: 592 NLPLYVMLATKK 603


>gi|157060398|gb|ABV03205.1| GyrA [Chlamydia trachomatis]
          Length = 435

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 190/433 (43%), Positives = 268/433 (61%), Gaps = 6/433 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGG I+   E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDK-NLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR     +            +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKL 442
           AIL LRL  L  L
Sbjct: 423 AILELRLYQLTGL 435


>gi|157060400|gb|ABV03206.1| GyrA [Chlamydia trachomatis]
          Length = 434

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 189/432 (43%), Positives = 267/432 (61%), Gaps = 6/432 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGG I+   E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDK-NLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR     +            +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRK 441
           AIL LRL  L  
Sbjct: 423 AILELRLYQLTG 434


>gi|71899845|ref|ZP_00681994.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Ann-1]
 gi|71730362|gb|EAO32444.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Ann-1]
          Length = 650

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 241/594 (40%), Positives = 369/594 (62%), Gaps = 16/594 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P + DG KPV RRII+AM E+ 
Sbjct: 1   MTDLTRPFFHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKS R VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   
Sbjct: 61  LNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T ++E++L  + E  V++   ++    EP   PS+ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A + L+DNP  +I  L +YI GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQNLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE--DIR 302
            G G  R RA +  E+       +V+T +PYQV  S++IE+IA+ I +K++P L+   +R
Sbjct: 241 TGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVR 295

Query: 303 DESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES      RIVLFP+++ +D + LM  +F  +D+E    +N+NV+ +   PQV PL  +
Sbjct: 296 DESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL+ R + + RR  +R+Q ++ R+ +L+GLLIA+LN+D++I IIRNED+PKPV+++R
Sbjct: 356 LSEWLSFRSDTVTRRLKYRLQKVESRLHMLEGLLIAFLNLDKVIHIIRNEDEPKPVLIAR 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L++ Q + IL+ +LR L +LEE  I+SE D L  E+++I+ +L+S  Q    I  E+ 
Sbjct: 416 FGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERDEINVILDSDVQLKKLIKDELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
              + F  +      R       +A +A  +  ++  EP+TVV+S +GWIR+ K H VD 
Sbjct: 476 ADAKTFGDA------RRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHDVDP 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
           S + ++EGD L  A+   +T ++  L ++G+AY+     L + RG+GE +    
Sbjct: 530 SGMSYREGDRLLAAVRTRSTHQVSFLDSEGRAYSTLVHTLPAARGNGEPLTGRF 583


>gi|1321899|emb|CAA63254.1| gyrA [Mycobacterium smegmatis]
          Length = 469

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 163/471 (34%), Positives = 265/471 (56%), Gaps = 11/471 (2%)

Query: 6   ISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++    E    + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM
Sbjct: 1   MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+ 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ 
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN+ E+ EA    ++N     E + E ++E + GPDFPT G ++   +
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSG-LIVGTQ 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y+ GRG  ++R    +EE  RG   IV+TE+PYQV     I  IAE +   ++  
Sbjct: 240 GIEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAG 299

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + +I D+ S      ++    R     +++ +++  + ++T F  NM  +    VP+ + 
Sbjct: 300 ISNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLR 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           LD +++ ++ H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+I         
Sbjct: 359 LDQLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALILVALATGRA 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                                   +++ ++ K    +           +NS
Sbjct: 419 GDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLSMNS 469


>gi|2181179|emb|CAB09528.1| gyrase alpha subunit [Acholeplasma laidlawii]
 gi|2204066|dbj|BAA20473.1| gyrase A subunit [Acholeplasma laidlawii]
          Length = 387

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 159/389 (40%), Positives = 255/389 (65%), Gaps = 3/389 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +   + + +K V++   ++  +L YA+S I  RA+P+ +DG KPV RRI++ M E  
Sbjct: 1   MSENTDKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD S+YD++VR+AQPF  R PL+ G GNFG++DGD 
Sbjct: 61  MYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +++ +D++ V+F D Y+  + EP V PS++PNLL NG++GIAV
Sbjct: 121 AAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  A +DNP+I++ +L++Y+ GPDFPTGG I+     + ++Y  
Sbjct: 181 GMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYMKGPDFPTGGQIL-GITGLRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E    +  I+ TEIPYQV K+ LIE+IAE++  K I  + D+RDES
Sbjct: 240 GKGIIAVRAQHEIVETKNRTELII-TEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +P + + +++  + ++T F +NM  L     P+++ L   L  ++
Sbjct: 299 NRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVD-GQPRLLSLKDALTHYI 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           AH+ E++ RR+ F ++ +     I   + 
Sbjct: 358 AHQIEIITRRTQFDLEKLKLDAYIRALVK 386


>gi|156181152|gb|ABU54855.1| GyrA [Bacillus licheniformis]
          Length = 341

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 159/342 (46%), Positives = 239/342 (69%), Gaps = 2/342 (0%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEV
Sbjct: 1   SQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  
Sbjct: 61  IGKYHPHGDSAVYEAMVRMAQDFNYRYTLVQGHGNFGSVDGDSAAAMRYTEARMSKISME 120

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ + 
Sbjct: 121 ILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDG 180

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            LA+  NP+I++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE  
Sbjct: 181 VLAVSKNPDITLPELVEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEETS 239

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
            G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  + 
Sbjct: 240 SGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRGANA 299

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           ++L+ +++  + ++T F +N+  L     P+V+ L   L+ +
Sbjct: 300 NVLLNNLYKQTALQTSFGINLLALVD-GQPKVLSLKQCLEHY 340


>gi|313609056|gb|EFR84776.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL F2-208]
          Length = 586

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 180/588 (30%), Positives = 332/588 (56%), Gaps = 18/588 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTGGII    + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQG-IDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++  + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINK-KRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + + + 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTNYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---D 539
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S    +
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
            + L  KE D        ++ D +LL ++ G     P   L   R   
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKN 576


>gi|238759145|ref|ZP_04620314.1| DNA topoisomerase IV subunit A [Yersinia aldovae ATCC 35236]
 gi|238702693|gb|EEP95241.1| DNA topoisomerase IV subunit A [Yersinia aldovae ATCC 35236]
          Length = 471

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 211/476 (44%), Positives = 321/476 (67%), Gaps = 11/476 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSD---LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 58  LNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+EI +A +ALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+
Sbjct: 178 VGMATDIPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDEIRKIYQ 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDE
Sbjct: 238 NGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDE 292

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 SDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  FS
Sbjct: 353 EWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFS 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           ++E Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  E
Sbjct: 413 ISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKE 468


>gi|160892780|ref|ZP_02073570.1| hypothetical protein CLOL250_00311 [Clostridium sp. L2-50]
 gi|156865821|gb|EDO59252.1| hypothetical protein CLOL250_00311 [Clostridium sp. L2-50]
          Length = 759

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 196/778 (25%), Positives = 349/778 (44%), Gaps = 71/778 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  V     + + Y+ Y++S I ERA+PD+RDG KPV RRI+++++ +        
Sbjct: 1   MSEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLNGLA-GSDKPH 59

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y+ LV +AQ +    PL+   GNFG++DG  AAA RYT
Sbjct: 60  RKCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGSVDGSGAAAMRYT 119

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+++  E + ++ +      F   ++  ++EP   P + PN+L +G++GIAVGMAT+I
Sbjct: 120 EARISKYTEDVCMKDLSFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +  +++PE+ +E LL+ + GPDF TGGII  S+E +++ Y  G G  +
Sbjct: 180 PTHNLGEVIDATVMYLNDPEVPLENLLDVMKGPDFATGGIINASKEDLMQVYETGLGRIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQ--KSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           VR +  + ++G G   I VTEIP+ +    ++ ++ +AEL   + +P + DI D   ++ 
Sbjct: 240 VRGKVEIRDIGHGRKSICVTEIPFTMIGGTAKFLDTVAELTRNRELPAVVDIADRGDKNG 299

Query: 310 RIVLFPKNR---SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +     +     +   ++  ++  + +E  F +N+N +     P+VM L  IL  +  
Sbjct: 300 ECLCIDVKKGTTDEEIRNIINILYKKAGLEDTFGVNINCIYD-GKPEVMGLRRILSIYTD 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------- 419
            +  +   + +  ++      EI  GLL A   ID II I+R   K              
Sbjct: 359 FKYGLYNTKYTKLLENQMEVREIKTGLLTAVDCIDLIIEILRGSKKVADAKACLMHGDTS 418

Query: 420 --------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                             TE Q DAIL +RL+ L  LE   +K EL++     +K   LL
Sbjct: 419 NITFRFKGSEADAKFLCFTEKQADAILAMRLQKLIGLEVNALKKELEDAEKLIKKYSKLL 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S      Q+  ++ E+KE ++       R+T   +              +     V + 
Sbjct: 479 ESKSNMKKQMIADMLEIKEKYAIP-----RKTVIADCGEVVV-----KKAQAVETEVAVL 528

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
              +       +        +     + +     T+R+ + + + + Y +   +++  + 
Sbjct: 529 LDRFYYIKVVDANLYDKNKAQIDKDYRFSFKCKNTERVGVFADNNQMYMIKVADIIKLQA 588

Query: 586 HGE-------------------AIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAF 624
                                  I    ++N N++I+     +      LL V+  G A 
Sbjct: 589 KKNTGKKGNGSGLIGRLSDKGIQIFEFCNMNGNENILYMCCLEQIIDKNLLFVTKHGQAK 648

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR 683
           +V  +         K       EE +  +     +   VV           I +IP   +
Sbjct: 649 LVPGNNYDVLR---KMIAASKQEEDIIFIHDAEMEDFIVVKSMLGYYARIQISEIPVKGK 705

Query: 684 GKG-VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           G G +RL +  D    + +     +   ++D+    + R          KRG  G+ +
Sbjct: 706 GAGCIRLVNITDDDEIEEVAVGSTKDSFFVDNTEILFTR------IKACKRGSKGTKL 757


>gi|281429788|gb|ADA70033.1| DNA gyrase subunit A [Bacillus sp. NK-2]
          Length = 341

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/342 (48%), Positives = 239/342 (69%), Gaps = 2/342 (0%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEV
Sbjct: 1   SQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  
Sbjct: 61  IGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAME 120

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E 
Sbjct: 121 ILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEG 180

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE  
Sbjct: 181 VLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETS 239

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
            G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  + 
Sbjct: 240 SGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANA 299

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +++ +++  + ++T F +N+  L     P+V+ L   L+ +
Sbjct: 300 HVILNNLYKQTALQTSFGINLLALVD-GQPKVLSLKQCLEHY 340


>gi|157829780|pdb|1AB4|A Chain A, 59kda Fragment Of Gyrase A From E. Coli
          Length = 493

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 209/499 (41%), Positives = 296/499 (59%), Gaps = 45/499 (9%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++
Sbjct: 1   VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTI 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y
Sbjct: 61  VRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +ISIE L+
Sbjct: 121 DGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQV 277
           E+I GPDFPT   I+  R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV
Sbjct: 181 EHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQV 239

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIAEL+  KR+  +  +RDES +D   ++    R    ++++ +++  + ++ 
Sbjct: 240 NKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQV 299

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
            F +NM  L     P++M L  I+  ++ HRREV+ RR+ F ++    R  IL+ L +A 
Sbjct: 300 SFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVAL 358

Query: 398 LNIDEIIAIIRNEDKPKP-------------------------------------VMVSR 420
            NID II +IR+   P                                       V    
Sbjct: 359 ANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGL 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+ 
Sbjct: 419 YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELE 478

Query: 481 EVKEIFSKSTDLGRRRTTF 499
            V+E F       +RRT  
Sbjct: 479 LVREQFGD-----KRRTEI 492


>gi|295111080|emb|CBL27830.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Synergistetes bacterium SGP1]
          Length = 536

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 173/388 (44%), Positives = 255/388 (65%), Gaps = 9/388 (2%)

Query: 3   VDNISNSNTLVE---ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           +D +S      +   E + ++ L   +++ YL YA+S I  RA+PD+RDG KPV RR+++
Sbjct: 21  IDFMSEEKIEGQRAGERILSLPLVGEIKDSYLNYAMSVIVGRALPDVRDGLKPVQRRVLY 80

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AMSE+GL   +A+KKSARIVGE +GK HPHGD S+YD++VRLAQ +  RY L+ GQGNFG
Sbjct: 81  AMSELGLRHNSAYKKSARIVGETMGKYHPHGDSSIYDTMVRLAQDWSLRYCLVDGQGNFG 140

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD AAA RYTEAR+ ++ EL+L  +DED V++   ++E   EP+  PS  PNLL NG
Sbjct: 141 SVDGDRAAAMRYTEARLHELGELMLADIDEDTVEWGPNFDESLKEPLSLPSVLPNLLVNG 200

Query: 180 TSGIAVGMATSIPSHNVQEICEAALAL----IDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           ++GIAVGMAT+IP HN++E+ +    L    I+  E S+  L+E + GPDFPTGG I+  
Sbjct: 201 STGIAVGMATNIPPHNLREVTDVLCWLLEEGINPAEASLADLMERLPGPDFPTGGQIL-G 259

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R+ I ++YR GRG   VR R  VE+  RG   ++VTEIPY V K+ LIE + +    K I
Sbjct: 260 RQGIYDAYRTGRGKVIVRGRMHVEDGRRGKVNVIVTEIPYAVNKTTLIETMVKAAQDKVI 319

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             ++DIRDES  +   ++   +R  +PDL+M  ++  + ++  F +    L   + P+++
Sbjct: 320 DGIQDIRDESNREGMRIVLELSRDANPDLVMRQLYKRTQLQATFGVINLALD-RQTPRLL 378

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAI 383
           PL  IL  +L++RR+V+ RR+ FR+   
Sbjct: 379 PLASILGLFLSYRRDVVRRRTQFRLNKA 406


>gi|119390532|pdb|2NOV|A Chain A, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390533|pdb|2NOV|B Chain B, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390534|pdb|2NOV|C Chain C, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390535|pdb|2NOV|D Chain D, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|224036402|pdb|3FOE|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036403|pdb|3FOE|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036410|pdb|3FOF|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036411|pdb|3FOF|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|262118792|pdb|3K9F|A Chain A, Detailed Structural Insight Into The Quinolone-Dna
           Cleavage Complex Of Type Iia Topoisomerases
 gi|262118793|pdb|3K9F|B Chain B, Detailed Structural Insight Into The Quinolone-Dna
           Cleavage Complex Of Type Iia Topoisomerases
 gi|295789386|pdb|3KSA|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Cleaved Form)
 gi|295789387|pdb|3KSA|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Cleaved Form)
 gi|295789394|pdb|3KSB|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Re-Sealed Form)
 gi|295789395|pdb|3KSB|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Re-Sealed Form)
 gi|295789470|pdb|3LTN|A Chain A, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
           (S. Pneumoniae)
 gi|295789471|pdb|3LTN|B Chain B, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
           (S. Pneumoniae)
          Length = 496

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 168/479 (35%), Positives = 297/479 (62%), Gaps = 5/479 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEA
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG  I++ R+ I ++Y  G+G   VR+
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +  
Sbjct: 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNF-TPRQVGIVPILSSYIAHRREVILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI
Sbjct: 360 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+   
Sbjct: 420 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPR 478


>gi|254718872|ref|ZP_05180683.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 465

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 288/454 (63%), Positives = 361/454 (79%), Gaps = 22/454 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLVEIERRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE+
Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEF 465


>gi|305677637|pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo
           Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 210/511 (41%), Positives = 321/511 (62%), Gaps = 13/511 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 266 TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 325

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA
Sbjct: 326 GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 385

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 386 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 445

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 446 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 505

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E+       IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 506 SYRMRAVYTIEK-----NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 560

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 561 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 620

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 621 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 680

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 681 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 740

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                   RR+     + A +   Q  M  +
Sbjct: 741 GDE-----RRSPIVARAEAVQIKEQDLMPAE 766


>gi|260363418|ref|ZP_05776268.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           K5030]
 gi|308112929|gb|EFO50469.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           K5030]
          Length = 461

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 207/465 (44%), Positives = 315/465 (67%), Gaps = 8/465 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  + ++++++ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T IP+QV  S+L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWHKE-----GSDIVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERR 461


>gi|288941703|ref|YP_003443943.1| DNA gyrase subunit A [Allochromatium vinosum DSM 180]
 gi|288897075|gb|ADC62911.1| DNA gyrase, A subunit [Allochromatium vinosum DSM 180]
          Length = 1386

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 202/706 (28%), Positives = 326/706 (46%), Gaps = 75/706 (10%)

Query: 112  ISGQGNF----G-----NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
            +    NF    G     ++DGD  AA RYTE RMT++A+ +L  +D++ VDF   Y+  +
Sbjct: 614  VDHHHNFLLACGVFVHNSVDGDPPAAMRYTEVRMTRIADTLLDDLDKETVDFVPNYDNTE 673

Query: 163  SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
             EP V P++FPNLL NG+SGIAVGMAT+IP HN++E+ +A LA+IDNP +S+++L+E + 
Sbjct: 674  HEPSVLPARFPNLLVNGSSGIAVGMATNIPPHNLREVIDACLAIIDNPLVSLDELMEIVP 733

Query: 223  GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR-GSWCIVVTEIPYQVQKSR 281
            GPDFPT G ++     I E+YR GRG   +RAR   E   R G   IV+TEIPYQV K+R
Sbjct: 734  GPDFPTAG-LINGVRGIREAYRTGRGRCVMRARATTETQKRSGREAIVITEIPYQVNKAR 792

Query: 282  LIEKIAELIIAKRIPLL--EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            L+E+IAEL+  K+I  +  + +RDES +D   ++    R    ++L+ +++  + ++  F
Sbjct: 793  LLERIAELVKEKKIEGIAQDGLRDESDKDGMRIVIELKRDTHSEVLLNNLYQHTQLQQVF 852

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
             +NM  L     P  + L  IL+ +L HRR+V+ RR+ + ++    R  +L+G  IA  N
Sbjct: 853  GINMVALVD-GQPLTLNLKQILEYFLRHRRDVVTRRTLYELRKARDRAHVLEGYAIALAN 911

Query: 400  IDEIIAIIRNEDKPKPVMVSRFS------------------------------------- 422
            IDE+IA I+    P                                              
Sbjct: 912  IDEVIATIKAAANPAEARERLMERHWAPGAVTGMLERAGADRTRPEELEACFGLSDAGYR 971

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            L+E Q  AIL+L+L  L  LE+ +I  E + +LA    +  +L+   +    I  E+  V
Sbjct: 972  LSERQAKAILDLQLHRLTGLEQDKILKEFEEILATIAALLLILSDPDRLMEVIREELIAV 1031

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
            ++ F        RRT   E+         + +I  E   V +S++G+         ++ K
Sbjct: 1032 RDQFGDE-----RRT---EIQLDQTDLTLEDLIAPEDRVVTLSHQGYVKTQPISDYQAQK 1083

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                  SA   KE D +     A++ D +L  S+ G+ Y L    L        G  +  
Sbjct: 1084 RGGKGKSATAIKEEDFIDRIFVANSHDTVLCFSSRGRVYWLKVYELPQAGRGARGRPMVN 1143

Query: 593  LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            L+ L   + I T      Y+    + + +S G        +      +G   + +  +E 
Sbjct: 1144 LLPLEAGERITTLLPVRDYEDGSFVFMATSAGTVKKTPLKDFSRPLSRGIIAIDLREDEL 1203

Query: 650  MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            +       G+  + +     K + FS   +  M R   GVR    ++G    +      +
Sbjct: 1204 LVGATITGGEQDLMLFTSAGKAVRFSESHVRSMGRAAHGVRGVMLQEGQRV-IALVAPED 1262

Query: 708  GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            G T +      Y +  +        RG  G +      R+G  + +
Sbjct: 1263 GGTVLSVTENGYGKRTDVDQFPTKGRGTQGVIAIDTAERNGAQVGA 1308



 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 59/137 (43%), Positives = 86/137 (62%), Gaps = 7/137 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + V  ++L   + + YL YA+S I  RA+PD+RDG KPVHRR++ +M E G  +  
Sbjct: 2   PDFAKEVLPINLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMHEQGNVWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A++KSAR+VG+V+GK HPHGD ++YD++VR+AQPF  R  L+ GQGNFG   GD+A    
Sbjct: 62  AYRKSARVVGDVMGKYHPHGDAAIYDTMVRMAQPFSLRNLLVDGQGNFGCFTGDTA---- 117

Query: 131 YTEARMTQVAELILQGV 147
               ++    E     +
Sbjct: 118 ---IKLADGTEKTFAEL 131



 Score = 81.4 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 59/146 (40%), Gaps = 6/146 (4%)

Query: 561  DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
              ++L ++ GKA      ++ S           + L   Q ++     +    +L V+  
Sbjct: 1214 QDLMLFTSAGKAVRFSESHVRSMGRAA-HGVRGVMLQEGQRVIALVAPEDGGTVLSVTEN 1272

Query: 621  GNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            G     +  +     R  +  + +     +  ++  ++   GD + ++ ++  L+  S+D
Sbjct: 1273 GYGKRTDVDQFPTKGRGTQGVIAIDTAERNGAQVGAILVHPGDEIMLIADDGTLIRTSVD 1332

Query: 677  QIPEMSR-GKGVRLQSYKDGGISDVI 701
            QIP + R  KGV+L +  +G     +
Sbjct: 1333 QIPVVGRNTKGVKLINLGEGQRLVFV 1358


>gi|265983858|ref|ZP_06096593.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
 gi|264662450|gb|EEZ32711.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 470

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 288/454 (63%), Positives = 361/454 (79%), Gaps = 22/454 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL G LIAYLN+DE+I IIR ED
Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLVEIERRLEILGGFLIAYLNLDEVIRIIREED 436

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE+
Sbjct: 437 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEF 470


>gi|84796010|gb|ABC66093.1| DNA gyrase subunit A [Bacillus sp. DAU101]
          Length = 341

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/342 (47%), Positives = 240/342 (70%), Gaps = 2/342 (0%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEV
Sbjct: 1   SQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  
Sbjct: 61  IGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAME 120

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI + 
Sbjct: 121 ILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDG 180

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            LA+ +N +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE  
Sbjct: 181 VLAVSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETP 239

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
            G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  + 
Sbjct: 240 SGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANA 299

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +++ +++  + ++T F +N+  L     P+V+ L   L+ +
Sbjct: 300 HVILNNLYKQTALQTSFGINLLALVD-GEPKVLNLKQCLEHY 340


>gi|269967412|ref|ZP_06181472.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
 gi|269828000|gb|EEZ82274.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
          Length = 478

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 207/465 (44%), Positives = 313/465 (67%), Gaps = 8/465 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNP+  +  +++Y+ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE-----GSDIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERR 461


>gi|255570742|ref|XP_002526325.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
 gi|223534352|gb|EEF36061.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
          Length = 540

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 175/405 (43%), Positives = 252/405 (62%), Gaps = 6/405 (1%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +SN   +  V    L     E Y+AYA+S +  RA+PD+RDG KPVHRRI+ AM E+GL 
Sbjct: 100 DSNGGRDARVVHTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLS 159

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+ID D  A
Sbjct: 160 SRKPFKKCARVVGEVLGKFHPHGDSAVYDALVRMAQDFSLRSPLIQGHGNFGSIDADPPA 219

Query: 128 AYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           A RYTE R+  + E  +L  ++ D VDF   +++   EP + P++ P LL NG+SGIAVG
Sbjct: 220 AMRYTECRLEALTEAVLLADLELDTVDFVPNFDDSQKEPSLLPARLPTLLLNGSSGIAVG 279

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +   ALI NPE ++++LLEY+ GPDFPTGG ++     I+E+YR G
Sbjct: 280 MATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGG-LIMGNLGILEAYRTG 338

Query: 247 RGGFRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           RG   VR +  VE  +       +++ EIPYQ  K+ L+EKIAEL+  K +  + DIRDE
Sbjct: 339 RGRIIVRGKTEVESLDSKTKRTAVIIKEIPYQTNKASLVEKIAELVENKNLDGVSDIRDE 398

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      ++    R  DP +++ +++ L+ +++ F  NM  +     P+ M L  +L+  
Sbjct: 399 SDRSGMRIVIEVKRGSDPSIVLNNLYRLTPLQSSFSCNMVGILD-GQPKQMGLKDLLQAS 457

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
              R  V+ RR+ F++     R  I++G++I   N+D +I II+ 
Sbjct: 458 Y-FRCSVVERRARFKLLQAQERRHIVEGIVIGLDNLDGVIRIIKE 501


>gi|310816010|ref|YP_003963974.1| DNA gyrase, A subunit [Ketogulonicigenium vulgare Y25]
 gi|308754745|gb|ADO42674.1| DNA gyrase, A subunit [Ketogulonicigenium vulgare Y25]
          Length = 424

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 175/393 (44%), Positives = 251/393 (63%), Gaps = 13/393 (3%)

Query: 6   ISNSNTLVEENVKA-----------VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVH 54
           +S++  L E + +            +S+   +   YL YA+S I  RAIPDLRDG KPVH
Sbjct: 1   MSDTPDLPETDAEKTPERPIHAGPTISIAQEMRTAYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI+ AM+E G     AF+KSAR VG+ +GK HPHGD S+YD+L R+AQ F     LI G
Sbjct: 61  RRILFAMNESGNTHDKAFRKSARAVGDTMGKYHPHGDSSIYDALARMAQDFSMSLQLIEG 120

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           QGNFG++DGDS AA RYTEAR+ +VA  +L  +D+D VDF+D Y+ +D EP V P++FPN
Sbjct: 121 QGNFGSMDGDSPAAMRYTEARLAKVASFMLADIDKDTVDFQDNYDGKDKEPTVLPARFPN 180

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
           +L NG  GIAVGMAT+IP HN+ E+ +A +ALI NP+++ E L++Y+  PDFPTGG+I+ 
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATIALIKNPDLTSEDLMQYVPAPDFPTGGMIL- 239

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R    ++Y  GRG   +RAR  VEE+ +  + I+V ++PYQV KS +I+KIAE +  KR
Sbjct: 240 GRSGARKAYLEGRGSILMRARSHVEEIRKDRYAIIVDDVPYQVNKSNMIDKIAEAVRDKR 299

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  +  I+DES  +   V+    R    D+++  ++  S M+  F  NM  L+ G  P+ 
Sbjct: 300 IEGIAHIQDESDRNGVRVVIELKRDATADVVLNQLYRFSPMQISFGANMLALN-GGRPET 358

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           + L   L+ ++  R EV+ RR++F ++    R 
Sbjct: 359 LTLYRFLQCFIDFREEVVARRTAFELRKARERA 391


>gi|323462878|pdb|3LPX|A Chain A, Crystal Structure Of Gyra
 gi|323462879|pdb|3LPX|B Chain B, Crystal Structure Of Gyra
          Length = 500

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 207/497 (41%), Positives = 298/497 (59%), Gaps = 45/497 (9%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR++ AM  +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 2   RALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVR 61

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  IL  +D++ VDF   Y+ 
Sbjct: 62  MAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHSILADLDKETVDFVPNYDG 121

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            +  P V P++ PNLL NGTSGIAVGMAT+IP HN+ E+  A LALIDN E++ E++LE+
Sbjct: 122 TEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPHNLTEVINACLALIDNSELTFEEILEH 181

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQK 279
           I GPDFPT GII   R  I E+YR GRG  ++RAR  ++     G   I+V E+PYQV K
Sbjct: 182 IPGPDFPTAGIIS-GRAGIEEAYRTGRGKIKIRARASIDVHETTGKETIIVHELPYQVNK 240

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           +RLIEK+AEL+  KR+  +  +RDES +D   ++    R    ++++ +++ L+ M+  F
Sbjct: 241 ARLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKRGEVGEVVLNNLYKLTQMQVSF 300

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
            LNM  L+    P++  +  +L+ ++ HRREV+ RR+ F ++    R  IL+GL IA  N
Sbjct: 301 GLNMVALT-NGQPKIFNIKEMLEAFVLHRREVVTRRTIFELRKARDRAHILEGLSIALAN 359

Query: 400 IDEIIAIIRNEDKPKP-------------------------------------VMVSRFS 422
           ID II +I+N +  K                                      +    + 
Sbjct: 360 IDPIIEMIKNSNNRKESEEKLISQGWELGNVANMLSEAGNDAARPEWLEPEYGIRDGLYY 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT  Q  AI++L+L  L  +E  +I SE   LL    ++  +L +  +    I  E+  +
Sbjct: 420 LTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAELMHILATPARLMEVICEELVAI 479

Query: 483 KEIFSKSTDLGRRRTTF 499
           ++ F        RRT  
Sbjct: 480 RDEFGDE-----RRTEI 491


>gi|153831108|ref|ZP_01983775.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 623-39]
 gi|148873414|gb|EDL71549.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 623-39]
          Length = 433

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 197/436 (45%), Positives = 293/436 (67%), Gaps = 8/436 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRK 441
            Q DAIL+ +     +
Sbjct: 417 LQADAILDTKYALRTE 432


>gi|261886133|ref|ZP_06010172.1| DNA gyrase subunit A [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 385

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 171/388 (44%), Positives = 259/388 (66%), Gaps = 3/388 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  +     +++ A+ +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G
Sbjct: 1   MEENIFSSNQDIDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +   + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R P + GQGNFG++DGD 
Sbjct: 61  VGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H++ E+    L L+D+ E+ +E ++ +I GPDFPTGG I+  ++ I+E+Y+ 
Sbjct: 181 GMATNIPPHSLDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGG-IIFGKKGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RA+  + E       IVV E+PYQV K++L   IA+L+  K I  + ++RDES
Sbjct: 240 GRGRIKLRAKTHI-EKKPNKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R    ++++ ++F  + ME  F + M  ++  + P+V  L  +LK +L
Sbjct: 299 DRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAIN-NKEPKVFSLLELLKLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGL 393
            HR+ V+ RR+ F +Q    R  IL+G 
Sbjct: 358 NHRKTVIIRRTIFELQKARARAHILEGF 385


>gi|331678181|ref|ZP_08378856.1| DNA gyrase/topoisomerase IV, A subunit [Escherichia coli H591]
 gi|331074641|gb|EGI45961.1| DNA gyrase/topoisomerase IV, A subunit [Escherichia coli H591]
          Length = 344

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/322 (50%), Positives = 226/322 (70%), Gaps = 2/322 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKS
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR GRG   +RAR
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRAR 245

Query: 256 WCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++ 
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDME 336
              R    ++++ +++  + ++
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQ 327


>gi|305677638|pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
 gi|305677639|pdb|2XKK|C Chain C, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 209/511 (40%), Positives = 320/511 (62%), Gaps = 13/511 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 266 TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 325

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA
Sbjct: 326 GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 385

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            R TEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 386 MRXTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 445

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 446 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 505

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E+       IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 506 SYRMRAVYTIEK-----NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 560

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 561 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 620

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 621 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 680

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 681 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 740

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                   RR+     + A +   Q  M  +
Sbjct: 741 GDE-----RRSPIVARAEAVQIKEQDLMPAE 766


>gi|256370589|ref|YP_003108414.1| putative partial DNA gyrase A subunit [Candidatus Sulcia muelleri
           SMDSEM]
 gi|256009381|gb|ACU52741.1| putative partial DNA gyrase A subunit [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 519

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 186/477 (38%), Positives = 294/477 (61%), Gaps = 8/477 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + +++L   ++  Y+ Y++S I  RA+PD +DG KPV RR+++ M E G      ++K
Sbjct: 2   EKIISINLEEEIKASYIDYSMSVIVSRALPDGKDGLKPVQRRVLYGMYEQGAF--KNYRK 59

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVY+++VR+AQ +  RYPLI GQGNFG+ID D  AA RYTE 
Sbjct: 60  SARIVGDVLGKYHPHGDSSVYEAIVRMAQSWSLRYPLIDGQGNFGSIDNDPPAAMRYTEI 119

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ +V+E +L  + +D VD +  ++    EP+V P+  PNLL NG+SGIAVG+AT++P H
Sbjct: 120 KLQKVSEEMLFDLKKDTVDIKLNFDSSCKEPIVLPTVIPNLLINGSSGIAVGIATNMPPH 179

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A  + I+N +ISIE+L++ II PDFPTGG I+   E + +++  GRG   +R+
Sbjct: 180 NIVESINAICSYIENTDISIEELMKDIIAPDFPTGG-IIYGYEGVKKAFLTGRGKILLRS 238

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +    E   G +C+++ EIPYQ++K  LI+K  +LI  +++  +  IRDES      ++F
Sbjct: 239 KV-FFEKIGGCYCLIIKEIPYQIRKEDLIKKTLKLIKEEKLEGISKIRDESDRTGMRIVF 297

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              ++++  LL+++IF  + +ET F +N   L     P  + L  I+K ++ HR EVL R
Sbjct: 298 YLKKNVNKHLLLKNIFKYTPLETTFSVNNIALV-NGKPVQLNLKDIIKHFVNHRHEVLIR 356

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS F ++    +  I+KG  +   NI+ +I +I++  +          +F+L+E QV AI
Sbjct: 357 RSKFDLKNAKEKAHIIKGFYLVLDNIETVIELIKSSKEKNHAKKKLLIKFNLSEKQVKAI 416

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           LNL+L SL KLE  +IK +   L  +     ++      Q   I  E++++KE +  
Sbjct: 417 LNLKLNSLTKLENEKIKKDYLKLKKDISYYTNIKTDIFFQKKIIKKELKQIKEKYGD 473


>gi|313638150|gb|EFS03408.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL S4-171]
          Length = 507

 Score =  436 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 161/489 (32%), Positives = 291/489 (59%), Gaps = 9/489 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTSEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E++++ + GPDFPTGGII    + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQG-IDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +     V    + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNF-NMVAIHNKRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + + + 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++S   +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSXXKSLAEQISVLEKILGDEAELVAVLKAELSEI 474

Query: 483 KEIFSKSTD 491
           K+ +     
Sbjct: 475 KKKYKTPRR 483


>gi|116090719|gb|ABJ55986.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 325

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 157/323 (48%), Positives = 231/323 (71%), Gaps = 2/323 (0%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHG
Sbjct: 1   LDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 61  DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 121 TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 180

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 181 DITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIV 239

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  + ++L+ +++
Sbjct: 240 TEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDANANVLLNNLY 299

Query: 331 MLSDMETRFPLNMNVLSMGRVPQ 353
             + ++T F +N+  L     P+
Sbjct: 300 KQTALQTSFGINLLALVD-GQPK 321


>gi|261337210|ref|ZP_05965094.1| putative DNA gyrase subunit A [Bifidobacterium gallicum DSM 20093]
 gi|270277558|gb|EFA23412.1| putative DNA gyrase subunit A [Bifidobacterium gallicum DSM 20093]
          Length = 933

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 207/673 (30%), Positives = 338/673 (50%), Gaps = 29/673 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V+E++    L   +   +L YA S I  RA+PD RDG KPV RRI++ M +M L  
Sbjct: 13  DPRTVKEHIVETPLNEEMSTSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMHLLP 72

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 73  NRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMA
Sbjct: 132 SRYTEARLAPAALGMNANIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMA 191

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++ +HN+ E+  AA  ++ +P+ S++ L+EY+ GPD+P GGII+  R+ I ++YR GRG
Sbjct: 192 TNMATHNLGEVVAAAKYVMKHPDASLDTLMEYVPGPDWPGGGIIIG-RDGIRDAYRDGRG 250

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
               RA   +E V      IVVTE+PY V   R++E+I+E +   ++  +    D +   
Sbjct: 251 TVTTRATTHMENVTARKKAIVVTELPYMVGPERVLERISEGVKNHKLEGISGAIDLTDRH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++       DPD ++  +   + ++  F +N   L     P  + L  +L  W+ H
Sbjct: 311 NGTRIVIEIKTGYDPDAVLVQLLKHTPLQENFTINNVALVD-GRPHTLGLRAMLDVWIDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLT 424
           RR V+ RRS +R      R+ ++ GLL+A ++IDE+I +IR           ++  F L 
Sbjct: 370 RRNVIRRRSEYRRAKALERLHLVDGLLMALIDIDEVIEVIRTSQDADTAKSRLMQVFDLD 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q   IL+LRLR L K+   ++++E D+L     +++ +L S +     +  E+ E   
Sbjct: 430 DIQAQYILDLRLRRLTKMSRIELETERDDLRRSIAELEGILASAQALDEVVVREMDEAVA 489

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            ++       RRT   + +         A  +       +S     ++L++ + ++    
Sbjct: 490 AYNTP-----RRTVLLDTADDGTLHPVSAHGDDTLSASALSAARKAQTLQATAQEVHEAS 544

Query: 545 FKEGDSLKIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
             +G+     + A        ++ LS  G    +P           E  +  +    +  
Sbjct: 545 KAKGNDAANMVQALQIEDEPCVIALSASGLIARVPV----QALSVLEGRRSDMPRTAHDM 600

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFI---VEESEIIANTRKGKTFLKVSSE---EKMKLVV- 654
           +  AF   +     +++S G   +   VE   +   T  G T + ++     E++     
Sbjct: 601 VRCAFATTTRSDYALITSAGRLVLAHAVELPSLALATVDGVTNVDLTGGIHAEELIGATQ 660

Query: 655 ---KVTGDHVAVV 664
               + G+ V   
Sbjct: 661 HTDPIDGERVIAA 673



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/179 (8%), Positives = 37/179 (20%), Gaps = 41/179 (22%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLI 672
           L + + +G             T    + + +   +++        G  +  V  +  LL 
Sbjct: 716 LALGTRRGLVKRWNRE--APTTMDSWSVIDLKDGDEVLAARDAPDGSRLVFVSSDSSLLT 773

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW-------------------- 711
           F    +    R   G+      +G  +        + L W                    
Sbjct: 774 FDAKHVRPQGRNSGGMAGIRLAEGCEAIAFSVVEPQELPWIPEEPVEDGTSQPADGIDTV 833

Query: 712 -----------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                            +        +     L     R   G    +        + +
Sbjct: 834 FHATGAVVLTVAGDADALAGTENGSAKITPLSLYPTKGRATGGVRSQRFLKGQNTLVFA 892


>gi|158428820|pdb|2INR|A Chain A, Crystal Structure Of A 59 Kda Fragment Of Topoisomerase Iv
           Subunit A (Grla) From Staphylococcus Aureus
          Length = 514

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 176/481 (36%), Positives = 294/481 (61%), Gaps = 5/481 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 24  VSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 83

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 84  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 143

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 144 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 203

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII    + I ++Y  G+G   V
Sbjct: 204 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQG-IDGIKKAYESGKGRIIV 262

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 263 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 322

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  +L H+ EV+
Sbjct: 323 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVV 381

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 382 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 441

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 442 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 501

Query: 490 T 490
            
Sbjct: 502 R 502


>gi|116090721|gb|ABJ55987.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 325

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 160/327 (48%), Positives = 233/327 (71%), Gaps = 2/327 (0%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHG
Sbjct: 1   LDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 61  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 121 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 180

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 181 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 239

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++
Sbjct: 240 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLY 299

Query: 331 MLSDMETRFPLNMNVLSMGRVPQVMPL 357
             + ++T F +N+  L     P+V+ L
Sbjct: 300 KQTALQTSFGINLLALVD-GQPKVLNL 325


>gi|260656380|pdb|3ILW|A Chain A, Structure Of Dna Gyrase Subunit A N-Terminal Domain
 gi|260656381|pdb|3ILW|B Chain B, Structure Of Dna Gyrase Subunit A N-Terminal Domain
          Length = 470

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 174/473 (36%), Positives = 277/473 (58%), Gaps = 15/473 (3%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HPHGD S+Y
Sbjct: 4   SVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIY 63

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSLVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEAR+T +A  +L+ +DE+ VDF 
Sbjct: 64  DSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFI 123

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA----LIDNPE 211
             Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP HN++E+ +A          + E
Sbjct: 124 PNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHNLRELADAVFWALENHDADEE 183

Query: 212 ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
            ++  ++  + GPDFPT G ++   +   ++Y+ GRG  R+R    VEE  RG   +V+T
Sbjct: 184 ETLAAVMGRVKGPDFPTAG-LIVGSQGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVIT 242

Query: 272 EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIF 330
           E+PYQV     I  IAE +   ++  + +I D+ S      ++    R     +++ +++
Sbjct: 243 ELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLY 302

Query: 331 MLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
             + ++T F  NM  +    VP+ + LD +++ ++ H+ +V+ RR+++R++  + R  IL
Sbjct: 303 KHTQLQTSFGANMLAIVD-GVPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHIL 361

Query: 391 KGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
           +GL+ A   +DE+IA+IR  +     +  ++    + E Q  AIL+++LR L  LE  +I
Sbjct: 362 RGLVKALDALDEVIALIRASETVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRI 421

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
             +L  + AE   ++ +L   ++Q   +  E+ E+ +          RRT   
Sbjct: 422 IDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGD-----DRRTRII 469


>gi|284050490|ref|ZP_06380700.1| DNA topoisomerase IV subunit A [Arthrospira platensis str. Paraca]
          Length = 451

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 186/453 (41%), Positives = 275/453 (60%), Gaps = 11/453 (2%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K AR+VG+V+GK HPHGDQSV
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVGDVLGKYHPHGDQSV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL-ILQGVDEDAVD 153
           YD+LVRL Q F  RYPL++G GNFG++D D  AA RYTE R+  +    +L  V E  VD
Sbjct: 61  YDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLATIGNEGLLTQVGEATVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F   ++    EP V P++ P L+ NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNP++ 
Sbjct: 121 FTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPHNLGEVVDGLIALIDNPDLC 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV-----GRGSWCI 268
            +KL++ I GPDFPTGG I+ + E I E+Y  GRG   +R    +E+V      R    I
Sbjct: 181 DQKLMQLIPGPDFPTGGEIIAT-EGIKEAYTSGRGSIVMRGVAKIEQVPTSGRKRTKNAI 239

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           VVTE+P+QV K+  IEK+A L+ A ++  + DIRDES  +   V+    R   P++++ +
Sbjct: 240 VVTELPFQVNKAGWIEKVAALVNAGKLEGISDIRDESDREGIRVVIELKREATPEVVLHN 299

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  +D+ ++F      L     P+ + L  IL+E+L  R + L RR    ++  +RR  
Sbjct: 300 LYQHTDLMSKFGAIFLALVNS-QPRQLSLKQILEEFLGFREQTLLRRYRSELEIAERREH 358

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAILNLRLRSLRKLEEY 445
           ++ GLL A   +DE+I I+RN        +   +R   +  Q DAIL + LR L  LE  
Sbjct: 359 LVGGLLKALSALDEVIDILRNAPDGSSAKMSLETRLDFSTEQADAILAMPLRRLTGLEGK 418

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           +++ E   L A+ +++  LL+   +    +  E
Sbjct: 419 KLQEEATELAAQIQRLRRLLSERSELLKSLKKE 451


>gi|56159832|gb|AAV80727.1| gyrase subunit A [Bacillus subtilis]
          Length = 321

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 157/322 (48%), Positives = 229/322 (71%), Gaps = 2/322 (0%)

Query: 32  AYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGD 91
            YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD
Sbjct: 1   DYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGD 60

Query: 92  QSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D 
Sbjct: 61  SAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDT 120

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+
Sbjct: 121 IDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPD 180

Query: 212 ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
           I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VT
Sbjct: 181 ITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 239

Query: 272 EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331
           E+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++ 
Sbjct: 240 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYK 299

Query: 332 LSDMETRFPLNMNVLSMGRVPQ 353
            + ++T F +N+  L     P+
Sbjct: 300 QTALQTSFGINLLALVD-GQPK 320


>gi|56159846|gb|AAV80734.1| gyrase subunit A [Bacillus sp. NRRL B-23964]
          Length = 327

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 163/328 (49%), Positives = 232/328 (70%), Gaps = 2/328 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD 
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI
Sbjct: 121 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           +  +L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE
Sbjct: 181 TNHELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTE 239

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  
Sbjct: 240 LPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQ 299

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + ++T F +N+  L     P+V+ L   
Sbjct: 300 TALQTSFGINLLALVD-GQPKVLSLKHA 326


>gi|56159858|gb|AAV80740.1| gyrase subunit A [Bacillus sp. NRRL B-23980]
          Length = 327

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 161/321 (50%), Positives = 230/321 (71%), Gaps = 2/321 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD 
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI
Sbjct: 121 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           + ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE
Sbjct: 181 TNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTE 239

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  
Sbjct: 240 LPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQ 299

Query: 333 SDMETRFPLNMNVLSMGRVPQ 353
           + ++T F +N+  L     P+
Sbjct: 300 TALQTSFGINLLALVD-GQPK 319


>gi|13810761|gb|AAK40025.1|AF272015_1 DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 313

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/314 (50%), Positives = 228/314 (72%), Gaps = 1/314 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD 
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NPEI
Sbjct: 121 DYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           +I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE
Sbjct: 181 TIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTE 239

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   V+    R  +  +++ +++  
Sbjct: 240 LPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQ 299

Query: 333 SDMETRFPLNMNVL 346
           + ++T F +N+  L
Sbjct: 300 TALQTSFGINLLAL 313


>gi|330953528|gb|EGH53788.1| DNA gyrase subunit A [Pseudomonas syringae Cit 7]
          Length = 285

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 152/283 (53%), Positives = 211/283 (74%), Gaps = 3/283 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALIDNPE+++++L++YI GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
           RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEK 285


>gi|56159842|gb|AAV80732.1| gyrase subunit A [Bacillus subtilis]
          Length = 320

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 157/321 (48%), Positives = 229/321 (71%), Gaps = 2/321 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD 
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTI 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I
Sbjct: 121 DYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           +I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE
Sbjct: 181 TIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTE 239

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  
Sbjct: 240 LPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQ 299

Query: 333 SDMETRFPLNMNVLSMGRVPQ 353
           + ++T F +N+  L     P+
Sbjct: 300 TALQTSFGINLLALVD-GQPK 319


>gi|313635483|gb|EFS01722.1| DNA gyrase, A subunit [Listeria seeligeri FSL N1-067]
          Length = 722

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 182/643 (28%), Positives = 324/643 (50%), Gaps = 28/643 (4%)

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGM
Sbjct: 1   AMRYTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGM 60

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP+H++ E+ +  LAL ++P+ISI +L+EYI GPDFPT G+I   R  I  +Y  GR
Sbjct: 61  ATNIPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMI-MGRSGIRRAYESGR 119

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VR R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES  
Sbjct: 120 GSITVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDR 179

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++    R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H
Sbjct: 180 SGMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVD-NHPKVLNLKEILYYYLEH 238

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLT 424
           ++ V+ RR+ F ++  + R  IL+GL IA  NID II +IR           ++++F+L+
Sbjct: 239 QKVVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLS 298

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K 
Sbjct: 299 DKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKV 358

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            ++      +RRT     +    +   + +I +E + + ++ RG+I+          +  
Sbjct: 359 KYAD-----KRRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRG 411

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  +   E D ++  +   T D +L  +  GK Y      +       +   I  L+
Sbjct: 412 GRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLL 471

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + +        +     L   +  G       S+     + G   +++   +++ 
Sbjct: 472 GIESQEQVNAVINLSEFTDDNYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELI 531

Query: 652 LVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V    G+ ++ +  ++ + + F    I  M R   GVR    ++G    +    + +  
Sbjct: 532 SVQMTDGNKNMIIATKHGQSIYFPEANIRVMGRTAAGVRGIRLREGDEV-IGMEVLEDDE 590

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +    + Y +        L  RGG+G        ++G  ++
Sbjct: 591 KVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 633



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
            E      A +  +    +      +  G ++        K     L A+  +E D L  
Sbjct: 473 IESQEQVNAVINLSEFTDDNYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELIS 532

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    +++ +  G++   P  N+        A    I L    +++   V +   K
Sbjct: 533 VQMTDGNKNMIIATKHGQSIYFPEANIRVMGRTA-AGVRGIRLREGDEVIGMEVLEDDEK 591

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +LVV+ KG       S+     R G   KT         +  +  VTG+  + ++  +  
Sbjct: 592 VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 651

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           L+ F ID + +  R   GV+L    +      + 
Sbjct: 652 LIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 685



 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 60/179 (33%), Gaps = 6/179 (3%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVISNRGWIRSLKSHSVD 539
             F+K    G R     E        +       +I  +    +      IR +   +  
Sbjct: 509 SQFAKIRQSGLRAVELRENDELISVQMTDGNKNMIIATKHGQSIYFPEANIRVMGRTAAG 568

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           +  +  +EGD +         +++L+++  G     PA         G  ++ +     N
Sbjct: 569 VRGIRLREGDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN 628

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
            ++V          L++++  G     E   +    R   G   +++  +EK+  V KV
Sbjct: 629 GNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 687


>gi|218134382|ref|ZP_03463186.1| hypothetical protein BACPEC_02276 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989767|gb|EEC55778.1| hypothetical protein BACPEC_02276 [Bacteroides pectinophilus ATCC
           43243]
          Length = 342

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 153/342 (44%), Positives = 224/342 (65%), Gaps = 6/342 (1%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  + + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+ +M E+     
Sbjct: 2   DEHIFDKVHDVDLQKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILFSMIELNNGPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              +K ARIVG+ +GK HPHGD S+Y++LV+LAQ F  RYPL+ G GNFG++DGD AAA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++++  +L  ++++ VDF   ++E + EP V PS++PNLL NGTSGIAVGMAT
Sbjct: 122 RYTEARLSRISMEMLADINKNTVDFIPNFDETEKEPTVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           +IP HN++E+  A + +IDN      + +IE++L  + GPDFPTG +I+  +  I E+YR
Sbjct: 182 NIPPHNLREVINAVVKIIDNQVEEDRDTTIEEILNIVKGPDFPTGAMIL-GKMGIEEAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  RVRA   +E +  G   IVVTE+PY V K++LIEKIAEL+  K+I  + D+RDE
Sbjct: 241 TGRGKIRVRAVTDIEPMANGKNRIVVTELPYMVNKAKLIEKIAELVREKKIDGITDLRDE 300

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           S      +     R ++P++++  +  +        L    L
Sbjct: 301 SDRSGMRISIELRRDVNPNIVLNQLLSIHRCRIHLVLLCLHL 342


>gi|258611537|ref|ZP_05711543.1| parC [Listeria monocytogenes FSL N3-165]
 gi|258601050|gb|EEW14375.1| parC [Listeria monocytogenes FSL N3-165]
          Length = 470

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/476 (33%), Positives = 290/476 (60%), Gaps = 9/476 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTGGII    + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQG-IDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++  + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINK-KRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR     +     + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +   
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEN 470


>gi|83953740|ref|ZP_00962461.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83841685|gb|EAP80854.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 358

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/325 (48%), Positives = 225/325 (69%), Gaps = 1/325 (0%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V++   +   YL YA+S I  RAIPDLRDG KPVHRRII++M E G+    A++KSA+ 
Sbjct: 25  SVNIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHEKAYRKSAKS 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G  HPHGD ++YD+LVR+AQ F    PLI GQGNFG++DGDSAAA RYTE+R+ +
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VA  +   +D++ VDF D Y+ ++ EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 VASFMTGDLDKETVDFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  ALI+NP+++ E+L+EYI GPDFPTGGI++  R    ++Y  GRG   +RA+  V
Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIML-GRSGARKAYLEGRGSVIMRAKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EI YQV KS +IEKIAE +  K+I  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRFAIVIDEICYQVNKSTMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNM 343
               +++M  ++  + M+T F  NM
Sbjct: 324 DATAEVVMNQLYRFTPMQTYFGCNM 348


>gi|56159844|gb|AAV80733.1| gyrase subunit A [Bacillus sp. NRRL B-23936]
          Length = 319

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 161/318 (50%), Positives = 230/318 (72%), Gaps = 1/318 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD 
Sbjct: 2   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +
Sbjct: 62  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 121

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI
Sbjct: 122 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 181

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           + ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE
Sbjct: 182 TNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTE 240

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  
Sbjct: 241 LPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQ 300

Query: 333 SDMETRFPLNMNVLSMGR 350
           + ++T F +N+  L  G+
Sbjct: 301 TALQTSFGINLLALVDGQ 318


>gi|145642256|ref|ZP_01797822.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|145273061|gb|EDK12941.1| DNA gyrase subunit A [Haemophilus influenzae 22.4-21]
          Length = 316

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 151/320 (47%), Positives = 215/320 (67%), Gaps = 4/320 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
            ++   +     R       
Sbjct: 297 NKEGIRIEIDIKRDAVGKWY 316


>gi|332141550|ref|YP_004427288.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551572|gb|AEA98290.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Deep ecotype']
          Length = 277

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 141/275 (51%), Positives = 192/275 (69%), Gaps = 5/275 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+ 
Sbjct: 1   MSDNAK----EILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELK 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            DF   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDFVPNYDGTEYIPEVLPTKVPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    +ALI +P I+I+ L+ +I GPDFPT  +I   R+ I ++YR 
Sbjct: 177 GMATNIPPHNLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAMIS-GRKGIEDAYRT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           GRG   +RA+  +E    G   IVV EIPYQV K+
Sbjct: 236 GRGKIYLRAKAEIETDANGKETIVVNEIPYQVNKA 270


>gi|56159866|gb|AAV80744.1| gyrase subunit A [Bacillus sp. NRRL B-23982]
          Length = 320

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 159/318 (50%), Positives = 228/318 (71%), Gaps = 1/318 (0%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  R +PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHG
Sbjct: 3   LDYAMSVIVSRPLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 62

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 63  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 122

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 123 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 182

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 183 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 241

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++
Sbjct: 242 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLY 301

Query: 331 MLSDMETRFPLNMNVLSM 348
             + ++T F +NM  L  
Sbjct: 302 KQTALQTSFGINMLALVD 319


>gi|284803500|emb|CBJ15406.2| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|284803669|emb|CBJ21240.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 312

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/313 (50%), Positives = 227/313 (72%), Gaps = 1/313 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NPEI+
Sbjct: 121 YQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+
Sbjct: 181 IQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   V+    R  +  +++ +++  +
Sbjct: 240 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQT 299

Query: 334 DMETRFPLNMNVL 346
            ++T F +N+  L
Sbjct: 300 ALQTSFGINLLAL 312


>gi|56159864|gb|AAV80743.1| gyrase subunit A [Bacillus sp. NRRL B-23970]
          Length = 323

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 160/321 (49%), Positives = 229/321 (71%), Gaps = 1/321 (0%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  R +PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHG
Sbjct: 3   LDYAMSVIVSRPLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 62

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 63  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 122

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 123 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 182

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 183 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 241

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++
Sbjct: 242 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLY 301

Query: 331 MLSDMETRFPLNMNVLSMGRV 351
             + ++T F +NM  L  G  
Sbjct: 302 KQTALQTSFGINMLALVDGSR 322


>gi|56159836|gb|AAV80729.1| gyrase subunit A [Bacillus subtilis]
          Length = 319

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 156/320 (48%), Positives = 228/320 (71%), Gaps = 2/320 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+
Sbjct: 181 IPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  +
Sbjct: 240 PYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 299

Query: 334 DMETRFPLNMNVLSMGRVPQ 353
            ++T F +N+  L     P+
Sbjct: 300 ALQTSFGINLLALVD-GQPK 318


>gi|227873175|ref|ZP_03991466.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
 gi|227841006|gb|EEJ51345.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
          Length = 459

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 184/432 (42%), Positives = 278/432 (64%), Gaps = 10/432 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L+  +E  Y+ YA+S I  RAIPD+RDG KPV RR+++A+  +G+      KK
Sbjct: 7   DKVQDVDLKKTMENAYIDYAMSVIVSRAIPDVRDGLKPVQRRVLYALQSLGVTPDKKTKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A IVGE +GK HPHGD S+Y SLV + QP+  R+ LI  QGNFG+ DGDS AA RYTEA
Sbjct: 67  CATIVGETMGKYHPHGDSSIYGSLVYMGQPWSMRHVLIDKQGNFGSEDGDSPAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M+++A  +L G++++ VDF   ++ E  EPVV PS+FPNLL NG +GIAVGM+T+IP H
Sbjct: 127 KMSRLAGEMLAGINKNTVDFMPNFSNEYEEPVVLPSRFPNLLVNGATGIAVGMSTNIPPH 186

Query: 195 NVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +    +IDN     +  IE+LL  I GPDFPTG  I+  +  I E+YR GRG  
Sbjct: 187 NLREVIKGVDCIIDNKIAGRKTEIEELLPIIQGPDFPTGATIL-GKRGIEEAYRTGRGKI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RA   +E +  G   I+V E+PY V +SR+IEKIAEL+  KRI  +  I D + ++ +
Sbjct: 246 KMRAICEIEPMHNGKNRILVKELPYLVYRSRVIEKIAELVKDKRIDGITYIHDAAGKNSK 305

Query: 311 -IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     + ++P +++  ++  + ++  F + M  +     P+++ L  IL+E+LAH+ 
Sbjct: 306 AKIAIECRKDVNPHVILNQLYKHTQLQETFGVIMLCIV-RGEPKILNLLEILEEFLAHQI 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
           +V+ RR+ + +Q  + R  IL+GLL A  +IDEI+AIIR     +    +   RF+ TE 
Sbjct: 365 QVVTRRTQYDLQKCEDRAHILEGLLKALDHIDEIVAIIRAAKNVEEAKQNLITRFAFTEV 424

Query: 427 QVDAILNLRLRS 438
           Q  AI+++RLR+
Sbjct: 425 QAQAIVDMRLRA 436


>gi|213616174|ref|ZP_03372000.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 401

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 176/406 (43%), Positives = 279/406 (68%), Gaps = 8/406 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP 401


>gi|56159868|gb|AAV80745.1| gyrase subunit A [Bacillus sp. NRRL B-41004]
          Length = 320

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 156/313 (49%), Positives = 224/313 (71%), Gaps = 1/313 (0%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  R +PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHG
Sbjct: 1   LDYAMSVIVSRXLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 61  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 121 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 180

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 181 DITIQELMELIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 239

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++
Sbjct: 240 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLY 299

Query: 331 MLSDMETRFPLNM 343
             + ++T F +  
Sbjct: 300 KQTALQTSFGITC 312


>gi|603238|gb|AAA57342.1| DNA gyrase A subunit [Mycoplasma gallisepticum]
 gi|1583653|prf||2121321B DNA gyrase:SUBUNIT=A
          Length = 383

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 161/385 (41%), Positives = 245/385 (63%), Gaps = 4/385 (1%)

Query: 1   MGVDNISNSNTLVEENV-KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  ++ +N   L+ + V K  S+   LE  ++ YA+S I  RA+P+ RDG KPV   +++
Sbjct: 1   MNPNDKNNIKELLNKTVVKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVT-WVLY 59

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
                GL     ++KSA+IVG V+GK HPHGD ++Y+++VR+AQPF  RY LI G GNFG
Sbjct: 60  GAYTSGLTHDKPYRKSAQIVGHVMGKYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFG 119

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGDSA A RYTEAR+++++  +L+ +D+D VDF D Y+  + EP+V PS FPNLLANG
Sbjct: 120 SIDGDSAGAMRYTEARLSKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANG 179

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+      L+ N   +IE+L E+I GPDFPT   I+     I
Sbjct: 180 SSGIAVGMATNIPPHNLSELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEIL-GETGI 238

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E +  GRG   VRA+  +EE+      IV+T+IPY V K+ LI KIAEL+  ++I  + 
Sbjct: 239 NEYFNTGRGSVSVRAKSEIEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIA 298

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  +   ++    R + P++L+  ++  + ++T F + M  L     P+V+ L  
Sbjct: 299 DLRDESNREGIRIVIETKRDVIPEVLLNQLYKSTQLQTNFSVAMLALV-NNQPKVLNLKE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAID 384
            L+ ++ H+ ++L R+++F ++   
Sbjct: 358 ALQIYIDHQFDILLRKTNFELKKAK 382


>gi|56159860|gb|AAV80741.1| gyrase subunit A [Bacillus sp. NRRL B-23954]
          Length = 318

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 158/319 (49%), Positives = 227/319 (71%), Gaps = 2/319 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQ 353
           ++T F +N+  L     P+
Sbjct: 300 LQTSFGINLLALVD-GQPK 317


>gi|284803673|emb|CBJ21242.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 316

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 160/317 (50%), Positives = 229/317 (72%), Gaps = 1/317 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+
Sbjct: 121 YQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+
Sbjct: 181 NQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  +
Sbjct: 240 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 299

Query: 334 DMETRFPLNMNVLSMGR 350
            ++T F +N+  L  G+
Sbjct: 300 ALQTSFGINLLALVDGQ 316


>gi|56159848|gb|AAV80735.1| gyrase subunit A [Bacillus sp. NRRL B-23958]
          Length = 325

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/326 (49%), Positives = 231/326 (70%), Gaps = 2/326 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGI 360
           ++T F +N+  L     P+V+ L   
Sbjct: 300 LQTSFGINLLALVD-GQPKVLSLKHA 324


>gi|50379830|gb|AAT76293.1| DNA gyrase subunit A [Fusobacterium canifelinum]
          Length = 321

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/321 (50%), Positives = 223/321 (69%), Gaps = 1/321 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKK
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDLAVYRTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDN +I I +L+ YI GPDFPTG II   R  I+E+Y+ GRG  +VR 
Sbjct: 182 NLGELVDGILALIDNKDIEILELMNYIKGPDFPTGAIID-GRVGIIEAYKTGRGKIKVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L 
Sbjct: 241 KVDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILI 300

Query: 315 PKNRSLDPDLLMESIFMLSDM 335
              +  +P+L++  ++  +D+
Sbjct: 301 EVKKGEEPELVLNKLYKYTDL 321


>gi|56159850|gb|AAV80736.1| gyrase subunit A [Bacillus sp. NRRL B-23959]
          Length = 324

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/326 (49%), Positives = 231/326 (70%), Gaps = 2/326 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGI 360
           ++T F +N+  L     P+V+ L   
Sbjct: 300 LQTSFGINLLALVD-GQPKVLSLKHA 324


>gi|261367452|ref|ZP_05980335.1| DNA gyrase subunit A [Subdoligranulum variabile DSM 15176]
 gi|282570224|gb|EFB75759.1| DNA gyrase subunit A [Subdoligranulum variabile DSM 15176]
          Length = 747

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 204/731 (27%), Positives = 342/731 (46%), Gaps = 34/731 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            N   L    +    +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M EMGL
Sbjct: 18  DNVEILSAGEIIETPITETLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGL 76

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFG---NID 122
             GA   KSA IVG  +  L+PHGD ++YD++VR+ +       P +  +GNFG   + D
Sbjct: 77  LKGAR-TKSANIVGSTM-HLNPHGDAAIYDTMVRMGRSNESLLVPFVDSKGNFGKAYSRD 134

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
             + AA RYTEA++  V E + + +D+D VDF   Y+   +EP + P  FP +LAN T G
Sbjct: 135 M-AYAAARYTEAKLEPVCEELFRDIDKDTVDFVPNYDGTTTEPTLLPVTFPTILANNTLG 193

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMA++I S N++E+C A +AL+ + +  +++    I  PDF  GG I+     +   
Sbjct: 194 IAVGMASNICSFNLEELCNATIALMKDAKADLKE---IIPAPDFVGGGTILYDAAEMKNV 250

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              GRG  RVRA+W      + + CI VT IP       +++KI EL+   +I  + D+R
Sbjct: 251 LENGRGSVRVRAQWS---YDKTNNCIDVTHIPPTTTVEAIMDKITELVKLGKIREISDMR 307

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DE+  +   +     R  DPD LM  +F  + +E  F  N NVL     P+V+ +  IL 
Sbjct: 308 DETDLNGLKLTIDLKRGQDPDKLMARLFKATPLEDSFACNFNVLI-AGQPKVLGVRDILL 366

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLL---IAYLNIDEIIAIIRNEDKPKPVMVS 419
           EW+A R E + RR+ + +Q   +R+ +L+GL    +      EI+     E +  P ++ 
Sbjct: 367 EWIAFRAECVRRRTYYDLQGKQKRLHLLQGLKAILLDIDKAIEIVRNTAEEAEVVPNLMI 426

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F + E Q + +  ++LR L +    +  +E++ L +  E +  +L    +    I  E+
Sbjct: 427 GFGIDEVQAEYVAEIKLRHLNREYILKRTAEIEELESAIEDLQDVLKRPARINKIIMNEL 486

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            +V + + K      RR        A +A   +  I   P+ +  +  G+ + +   S+ 
Sbjct: 487 SDVAKKYGKP-----RRCEILYEVPASEAEEPEQQIPDYPVHLFFTRDGYFKKITPQSLR 541

Query: 540 LS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           +S     K+GD +     +  +  +L  +   + Y   A +    +       +   L  
Sbjct: 542 MSGEQKLKDGDEVLFTCESTNSVELLFFTNHHQVYKSHAYDFADSKASVLGDYVASSLGM 601

Query: 599 NQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            +  V  ++    D    +L     G    V  S       + K     S + ++  +  
Sbjct: 602 EEGEVPLYMVVTPDYKGWMLFFFQNGKCAKVPLSSYETKQNRRKLLKAYSDKAELACMRY 661

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMS-R-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           +  +  +A+   N +LL+     IPE S R   GV + S K    + +    + EGL   
Sbjct: 662 LPEETELAIFTSNNRLLLAGSALIPEKSTRDTAGVNVVSLKKN--ARIARVTLSEGLEL- 718

Query: 713 DSAGRSYNRSE 723
            +    Y    
Sbjct: 719 -AEAHRYRVRT 728


>gi|50379887|gb|AAT76296.1| DNA gyrase subunit A [Fusobacterium canifelinum]
          Length = 321

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 162/321 (50%), Positives = 223/321 (69%), Gaps = 1/321 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKK
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGEVLGKYHPHGDLAVYRTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA+IDN +I I +L+ YI GPDFPTG II   R  I+E+Y+ GRG  +VR 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIID-GRAGIIEAYKTGRGKIKVRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L 
Sbjct: 241 KVDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILI 300

Query: 315 PKNRSLDPDLLMESIFMLSDM 335
              +  +P+L++  ++  +D+
Sbjct: 301 EVKKGEEPELVLNKLYKYTDL 321


>gi|56159854|gb|AAV80738.1| gyrase subunit A [Bacillus sp. NRRL B-23973]
 gi|56159856|gb|AAV80739.1| gyrase subunit A [Bacillus sp. NRRL B-23976]
          Length = 318

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 159/319 (49%), Positives = 228/319 (71%), Gaps = 2/319 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQ 353
           ++T F +N+  L     P+
Sbjct: 300 LQTSFGINLLALVD-GQPK 317


>gi|255030550|ref|ZP_05302501.1| DNA gyrase subunit A [Listeria monocytogenes LO28]
          Length = 323

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 152/322 (47%), Positives = 218/322 (67%), Gaps = 1/322 (0%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+H++ E+ +  LAL  +PEI+I  L+EYI GPDFPT G+I   R  I  +Y  GRG  
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMI-MGRSGIRRAYESGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES     
Sbjct: 242 TVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFML 332
            ++    R +   +++ +    
Sbjct: 302 RIVIEVRRDISASVIVNNFIQK 323


>gi|56159852|gb|AAV80737.1| gyrase subunit A [Bacillus sp. NRRL B-23977]
          Length = 317

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 159/319 (49%), Positives = 228/319 (71%), Gaps = 2/319 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQ 353
           ++T F +N+  L     P+
Sbjct: 300 LQTSFGINLLALVD-GQPK 317


>gi|56159830|gb|AAV80726.1| gyrase subunit A [Bacillus subtilis]
 gi|56159838|gb|AAV80730.1| gyrase subunit A [Bacillus subtilis]
 gi|56159840|gb|AAV80731.1| gyrase subunit A [Bacillus subtilis]
          Length = 318

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 155/319 (48%), Positives = 227/319 (71%), Gaps = 2/319 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+P
Sbjct: 181 PELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + 
Sbjct: 240 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQ 353
           ++T F +N+  L     P+
Sbjct: 300 LQTSFGINLLALVD-GQPK 317


>gi|12597946|gb|AAB67040.2| gyrase A subunit [Pseudomonas stutzeri]
          Length = 275

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/273 (53%), Positives = 200/273 (73%), Gaps = 2/273 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  + ++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMARLAHELLADLHKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  L LI NP+ISI++L+ +I GPDFPT   I+ SR  I+E+YR GRG   +
Sbjct: 184 PHNLGEVIDGCLVLIANPDISIDELMTHIPGPDFPTAS-IINSRAGIIEAYRTGRGRIYM 242

Query: 253 RARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIE 284
           RAR  +E+    G+  IV+TE+PYQ+ K+RLIE
Sbjct: 243 RARSIIEDIDKVGAEQIVITELPYQLNKARLIE 275


>gi|284049783|emb|CBJ15409.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 310

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 156/308 (50%), Positives = 223/308 (72%), Gaps = 1/308 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLN 342
           ++T F +N
Sbjct: 300 LQTSFGIN 307


>gi|332148448|dbj|BAK20073.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148450|dbj|BAK20074.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148462|dbj|BAK20080.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148468|dbj|BAK20083.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 308

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 154/309 (49%), Positives = 224/309 (72%), Gaps = 1/309 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+
Sbjct: 181 IPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  +
Sbjct: 240 PYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 299

Query: 334 DMETRFPLN 342
            ++T F +N
Sbjct: 300 ALQTSFGIN 308


>gi|56159828|gb|AAV80725.1| gyrase subunit A [Bacillus subtilis]
          Length = 316

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 155/318 (48%), Positives = 226/318 (71%), Gaps = 2/318 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PY
Sbjct: 181 ELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + +
Sbjct: 240 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 299

Query: 336 ETRFPLNMNVLSMGRVPQ 353
           +T F +N+  L     P+
Sbjct: 300 QTSFGINLLALVD-GQPK 316


>gi|284803679|emb|CBJ21245.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 317

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 158/319 (49%), Positives = 226/319 (70%), Gaps = 2/319 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+    EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGSKREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRCGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQ 353
           ++T F +N+  L     P+
Sbjct: 300 LQTSFGINLLALVD-GQPK 317


>gi|160905586|gb|ABX52351.1| gyrase subunit alpha [Bacillus sonorensis]
          Length = 309

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 151/310 (48%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D +D++D
Sbjct: 61  AMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP+IS+ +
Sbjct: 121 NYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVVDGVLAVSKNPDISLAE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE   G   I+VTEIPYQ
Sbjct: 181 LMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVTEIPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES  +   ++    R  + ++L+ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIELRRDANANVLLNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|330685619|gb|EGG97263.1| DNA gyrase/topoisomerase IV, A subunit [Staphylococcus epidermidis
           VCU121]
          Length = 402

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/403 (39%), Positives = 264/403 (65%), Gaps = 2/403 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G  F   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTFDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGG I++  + I ++Y  G+G   V
Sbjct: 181 PHNLGEVIQATLKYIDNPDITVSQLMKYIKGPDFPTGG-IIQGLDGIKKAYESGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   EE+  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVDEEELRNGRKELIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S    P++M +  I+  ++ H+ EV+
Sbjct: 300 AIELKKDVNSEAIKNFLYKNSDLQISYNFNMVAISD-GRPKLMGIKQIIDSYINHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
             R+ F ++  ++R+ I++GL+ A   +DE+IA+IRN    K 
Sbjct: 359 ANRTKFDLEHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKE 401


>gi|268610225|ref|ZP_06143952.1| DNA gyrase/topoisomerase IV, subunit A [Ruminococcus flavefaciens
           FD-1]
          Length = 747

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 193/710 (27%), Positives = 348/710 (49%), Gaps = 29/710 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL-DFGAAFKKS 75
           V +  +   L++ Y+ YA+S I  RA+P++ DGFKP HR++++ M + GL        KS
Sbjct: 26  VVSEKIADTLKKNYMPYAMSVIISRALPEI-DGFKPSHRKLLYMMYKRGLLSPDKERSKS 84

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFGNIDGDS--AAAYRYT 132
           A +VGE + KL+PHGDQ++Y++LVR+ +      +P I  +GNFG         AA RYT
Sbjct: 85  ANVVGETM-KLNPHGDQAIYETLVRMTRGNEALLHPYIDSKGNFGKQYSSKMHFAAPRYT 143

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++ ++   + + +D++ VDF   Y+    EP + P+ FP +L N  +GIAV MA+++ 
Sbjct: 144 EVKLEKICNELFRDIDKETVDFVPNYDNTMQEPTLLPASFPTVLVNSNTGIAVSMASNVC 203

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
             N++E+CE  +AL+ +P      +L  + GPDFP GG ++     + + Y  GRG  +V
Sbjct: 204 PFNLEEVCETTIALMKDPN---HDILSTLKGPDFPGGGFMLYDEAELNKVYETGRGSIKV 260

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+++      + + C+ +TEIPY      +I+KI EL+ A +I  +  IRDE+  D   +
Sbjct: 261 RSKYS---YDKAANCLEITEIPYTTTVEAIIDKIIELVKAGKIREVSYIRDETDIDGLKI 317

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R+ DPD LM+ ++ L+ ++  +P N N+L     P+VM +  IL EW A R E +
Sbjct: 318 AIDLKRNTDPDKLMQKLYRLTPLQDSYPCNFNILI-AGTPKVMGVREILTEWTAFREECI 376

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDE---IIAIIRNEDKPKPVMVSRFSLTENQVD 429
            RR+   +     ++ +L+ L    L+ID+   II    NE    P ++  F + E Q +
Sbjct: 377 QRRTYHDLTKKKEKLHLLEALSKILLDIDKAIRIIRETENEADVVPNLMIGFGIDEIQAE 436

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +  ++LR++ K    +   E+D L  + E+++ +L   K+    I  E+R+V + ++K 
Sbjct: 437 FVAEIKLRNINKQYILRRVEEVDQLKKDIEEMEDILRDKKKIRKIIINELRDVIKNYAKP 496

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-SALHFKEG 548
                 R T        +   +       P+ + +S  G+ + +   S+ + S    KEG
Sbjct: 497 ------RKTMFYYQSDIEEEEEIDDTPDYPVNLFVSKSGYFKKITPQSLRMSSEHKLKEG 550

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLP--AGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D +  +  A     ++  S   +AY     A +       G+ +   +  + N+++VT  
Sbjct: 551 DYISQSFEATNKTDLIFFSDKAQAYKSKASAFDDTKASVMGDYVPAKLSFDENENLVTML 610

Query: 607 V-YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
              D +  ++     G A  V        T + K     S +  +   + V  D  + + 
Sbjct: 611 PTTDYSGYIVFFFENGKAAKVPVKSYETKTNRKKLAKAYSEKSPLIAALFVGEDCDILLR 670

Query: 665 GENRKLLIFSIDQI-PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             +   L+F+   I P+ +R  +GV++ + +   +         E    +
Sbjct: 671 SSSGHALVFNTGMILPKSTRDSQGVQVMTLRKKALLASAVIITDEEREAL 720


>gi|160905556|gb|ABX52336.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905654|gb|ABX52385.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NPEI+I++
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   V+    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|332148486|dbj|BAK20092.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 304

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 155/303 (51%), Positives = 221/303 (72%), Gaps = 1/303 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+
Sbjct: 121 YQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+
Sbjct: 181 NQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  +
Sbjct: 240 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 299

Query: 334 DME 336
            ++
Sbjct: 300 ALQ 302


>gi|23011502|ref|ZP_00051841.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 623

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 312/626 (49%), Positives = 436/626 (69%), Gaps = 8/626 (1%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++T++A  +++G+DED+VDFR TY+  + EP V PS  PNLLANG++GIAVGMA
Sbjct: 1   MRYTEAKLTEIAAALMEGLDEDSVDFRPTYDGTEEEPAVMPSAIPNLLANGSAGIAVGMA 60

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HN+ EIC+A   LI  P+  +++L+ ++ GPDFPTGG++VE+  +I E+YR G+G
Sbjct: 61  TSIPPHNLGEICDALDHLIAKPDCDVDELIAHMPGPDFPTGGVLVETSAAISEAYRTGKG 120

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            FRVRA+W VE++  G + IV+TEIPYQVQK++LIEKIAEL+  K++PLL DIRDESAED
Sbjct: 121 SFRVRAKWAVEKLSHGLYQIVITEIPYQVQKAKLIEKIAELLSEKKLPLLADIRDESAED 180

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM----GRVPQVMPLDGILKEW 364
           +R+VL P+NR+++ +L+ME +F  +D+E+RF LNMNVL+        P VM L  +L+ +
Sbjct: 181 IRLVLEPRNRTVEAELVMEQLFRQTDLESRFSLNMNVLAPDSHGHLTPGVMNLKEVLRAF 240

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L HR  VL RR+ FR++ I +R+E+L+G L  Y ++D++I IIR  D+PK  ++  F L+
Sbjct: 241 LDHRMVVLERRTRFRLEKIAKRLEVLEGFLKVYADLDKVIKIIRFADEPKAELIKTFKLS 300

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AILN+RLRSL KL+E +IK+E   L AEK  +++LL    ++W  IA +  E+++
Sbjct: 301 EVQAEAILNMRLRSLNKLQELEIKTEHAELSAEKADLEALLADEGRRWTTIAAQNAEIRK 360

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            F  +T LG+RRT   +   A      +A +E+E IT+V+S +GWIR+LK HS    AL 
Sbjct: 361 AFGGATALGKRRTELGDAPSA-VVVPIEAYVEREAITMVLSEKGWIRALKGHSDSPDALK 419

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           FKEGD L   L A TTD+IL+ +TDG+ YT+    L SGRGHGE ++L+IDL  + DI  
Sbjct: 420 FKEGDQLGHLLKAWTTDKILVFATDGRFYTIGGDKLPSGRGHGEPLRLMIDLAGDVDIAA 479

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
             V+    KLLV ++    F+VEE+E++A TR GK  L     EK K  +   GD VAV+
Sbjct: 480 VLVHKPGRKLLVATNSDRGFVVEENEVLAQTRAGKMVLNCGDGEKAKFCLPFEGDAVAVI 539

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           GENRKLL+F  D+IP M+RG+GV LQ Y+DGG++D+  F + +GLTW         R+E 
Sbjct: 540 GENRKLLVFMADEIPVMTRGRGVILQKYRDGGMADIKVFTLAQGLTWNLGD---RVRTEA 596

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DL  WLGKR  VG L P GFPR+ +F
Sbjct: 597 DLTPWLGKRASVGRLPPTGFPRNNRF 622


>gi|332148454|dbj|BAK20076.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148464|dbj|BAK20081.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148466|dbj|BAK20082.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 307

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 153/308 (49%), Positives = 223/308 (72%), Gaps = 1/308 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+P
Sbjct: 181 PELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + 
Sbjct: 240 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 299

Query: 335 METRFPLN 342
           ++T F +N
Sbjct: 300 LQTSFGIN 307


>gi|154496378|ref|ZP_02035074.1| hypothetical protein BACCAP_00666 [Bacteroides capillosus ATCC
           29799]
 gi|150274461|gb|EDN01538.1| hypothetical protein BACCAP_00666 [Bacteroides capillosus ATCC
           29799]
          Length = 747

 Score =  416 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 200/710 (28%), Positives = 339/710 (47%), Gaps = 30/710 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    +   LE  Y+ YA+S I  RAIP++ DGFKP HR++++ M +M L  GA   KS
Sbjct: 25  EVLEQPITETLEINYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYQMKLLGGAR-TKS 82

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDG-DSA-AAYRYT 132
           A +VG+ + KL+PHGD ++YD++VRL++ +    +PL+  +GNFG +   D A AA RYT
Sbjct: 83  ANVVGQTM-KLNPHGDAAIYDTMVRLSRGYGALLHPLVDSKGNFGKVYSRDMAWAASRYT 141

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+  +   + + +D+D VDF D Y+    EP + P+ FPN+L +   GIAVGMA+++ 
Sbjct: 142 EVRLDGICAELFRDIDQDTVDFVDNYDGTMQEPTLLPTTFPNVLVSANQGIAVGMASNLC 201

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
             N+ E+C+A +  + +P+     L   +  PDFPTGG ++     I + Y  GRG F+V
Sbjct: 202 GFNLAEVCDATVEYLKHPD---CDLTAVLKAPDFPTGGELLYDAAEIAQIYNTGRGSFKV 258

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RARW   +       I + EIPY      +++K+AELI A ++  + D+RDE+      +
Sbjct: 259 RARWRYLKSE---NLIEIYEIPYSTTVEAIMDKVAELIKAGKVKEIADMRDETDLTGLKL 315

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R  DPD LM+ +F  + +   F  N N+L    +P+VM +  IL+EW A R E +
Sbjct: 316 TIDLKRGTDPDKLMQKLFRATPLMDSFACNFNILI-AGMPRVMGVREILEEWTAWRMEGV 374

Query: 373 FRRSSF---RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
            RR+ F   + Q     ++ LK +L+      +II     + +  P ++  F +   Q +
Sbjct: 375 RRRTYFVMKKKQEKLHLLKGLKKILLDIDRAIKIIRETEEDAEVVPNLMIGFGIDNIQAE 434

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            + +++LR++ K    +   E   L  E   +  ++++  +    I  E+  VK+ +++ 
Sbjct: 435 YVADIKLRNINKEYILKRIEETSTLEEEIADLQDIVSNPGRIKKIIIAELGAVKKKYAQP 494

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALHFKEG 548
                RRT      +       +  I   P+T  +S  G+ + +   S+ ++    +KEG
Sbjct: 495 -----RRTEIIYEHQRLSEPEPEEEIPDYPVTAFLSREGYFKKITPASLRMNSEQKYKEG 549

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ---DIVTA 605
           D   +       D +L+ +   + Y     +    +       L   L        +   
Sbjct: 550 DGAWLQWECTNRDELLVFTDRQQCYKTRMSDFDDAKASVLGDYLPTKLEMEAGESVVWAC 609

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
              D +  LL     G A  VE S     TR+ K     S +  +   + +  D  +AV+
Sbjct: 610 VPGDYSGNLLFFFRNGKAARVELSAYQTQTRRRKLTGAYSDKSPLAAALLLREDLELAVI 669

Query: 665 GENRKLLIFSIDQIPEMS--RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
               + LIF    +   +    +GV + + K     D    +  EG   +
Sbjct: 670 STEGRCLIFHTALLAPKATRTTQGVNVMTLKPKYSVD--RVEPVEGSPIV 717


>gi|332148498|dbj|BAK20098.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 304

 Score =  416 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 151/303 (49%), Positives = 220/303 (72%), Gaps = 1/303 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+
Sbjct: 181 IPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  +
Sbjct: 240 PYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 299

Query: 334 DME 336
            ++
Sbjct: 300 ALQ 302


>gi|160905552|gb|ABX52334.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905608|gb|ABX52362.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905616|gb|ABX52366.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905618|gb|ABX52367.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905626|gb|ABX52371.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905628|gb|ABX52372.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|284803677|emb|CBJ21244.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 155/310 (50%), Positives = 222/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F + +  L
Sbjct: 300 TSFGIKLLAL 309


>gi|257439263|ref|ZP_05615018.1| DNA gyrase subunit A [Faecalibacterium prausnitzii A2-165]
 gi|257198305|gb|EEU96589.1| DNA gyrase subunit A [Faecalibacterium prausnitzii A2-165]
          Length = 749

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 201/714 (28%), Positives = 347/714 (48%), Gaps = 32/714 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   +V    +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M  MGL  GA 
Sbjct: 24  LNAGSVLEDPITSTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYGMGLLKGAR 82

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAA 127
             KSA IVG  +  L+PHGD ++YD++VR+ +       P +  +GNFG   + D  S A
Sbjct: 83  -TKSANIVGSTM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDM-SCA 139

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++  V E + + +D++ VDF   Y+   +EP + P  FP +LAN T GIAVGM
Sbjct: 140 AARYTEAKLEGVCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGM 199

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           A +I S N+ E+C   +AL+ +P+  I      +  PDF  GG I+     + E Y  GR
Sbjct: 200 ACNICSFNLAELCATTVALMKDPKHDISTT---MPAPDFVGGGQILYDEAQMREVYENGR 256

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  +VRAR+ V     G   + +T+IP       +++KIAEL+ A +I  + D+RDE+  
Sbjct: 257 GSIKVRARYNVV---PGENMLEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDL 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   +     R +DP+ LM  ++  + +E  F  N NVL     P+VM +  IL+EW A 
Sbjct: 314 NGLKLTLDLKRGVDPEKLMAKLYKTTPLEDSFSCNFNVLVS-GQPRVMGVREILQEWTAF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE---IIAIIRNEDKPKPVMVSRFSLT 424
           R E + RR+ + +   ++R+ +LKGL    L+ID+   II     E +  P ++  F + 
Sbjct: 373 RMECVRRRTYYDLHGKEKRLHLLKGLAAILLDIDKAIHIIRTTEEETEVVPNLMIGFGID 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q D +  ++LR L +    +   E++ L  +   ++ +L    +    I  E+ +V +
Sbjct: 433 EVQADYVAEIKLRHLNREYILKRTGEIEQLEKDIADLNDILAKPARIRRIIINELNDVAK 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSAL 543
            +++      RR+        +++  ++ +I   P+TV  +  G+++ +   S+    A 
Sbjct: 493 KYAQP-----RRSEILYDLPEEESGAEEEVIPDYPVTVFFTREGYLKKIPPQSLRTAGAH 547

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQD 601
             KEGD +   +        L  +   + Y +    L  G+     I L   + ++  ++
Sbjct: 548 KLKEGDEIIHQVETRNNVEALFFTDKQQVYKVRLNELEDGKVAQMGIYLPGRLGMDEGEN 607

Query: 602 IVT-AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
           I+      D +  +L   + G    +  +       + K     S +E +  ++ +  D 
Sbjct: 608 ILAMVITGDYSGYVLFFFAGGKCAKIPLASYATKQNRRKLLKAYSDKEPLAKLLFLPEDT 667

Query: 660 HVAVVGENRKLLIFSIDQI--PEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
            +A+     ++L+ +  QI        +GV + + K      +      E L  
Sbjct: 668 ELAIRTSAGRMLLVNTAQIAAKTTRDSQGVAVVTLKKNQT--IASVVPAETLEL 719


>gi|13810775|gb|AAK40032.1|AF272022_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 307

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 153/307 (49%), Positives = 222/307 (72%), Gaps = 1/307 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PY
Sbjct: 181 ELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + +
Sbjct: 240 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 299

Query: 336 ETRFPLN 342
           +T F +N
Sbjct: 300 QTSFGIN 306


>gi|289449920|ref|YP_003475278.1| DNA gyrase/topoisomerase IV subunit A [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184467|gb|ADC90892.1| DNA gyrase/topoisomerase IV, A subunit [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 727

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 187/690 (27%), Positives = 334/690 (48%), Gaps = 29/690 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   LE+ Y+ YA+S I  RAIP++ DGFKP HR++++ M +MGL  G+   KSA +VG+
Sbjct: 12  ISDTLEKNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMGLLSGSR-TKSANVVGQ 69

Query: 82  VIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAAAYRYTEARMT 137
            + KL+PHGD ++Y+++VRL +      +P +  +GNFG   + D    AA RYTE ++ 
Sbjct: 70  TM-KLNPHGDAAIYETMVRLTRGNASLLHPYVDSKGNFGKQYSRDMQ-FAASRYTEVKLD 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++   + + +D+D V F   Y+    EP + P+ FP++L N   GIAVGMA++I   N++
Sbjct: 128 KICTELFRAIDKDVVTFTPNYDATMQEPTLLPATFPSVLVNANQGIAVGMASNICPFNLR 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C A +A I NP+  IEK   YI GPDFP GG  +  RE + + +  GRG  R+RAR+ 
Sbjct: 188 EVCSATIAYIKNPDCVIEK---YIKGPDFPGGGEFIVDREELAKVFDSGRGTLRLRARYR 244

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           V      +  I + EIPY      +++ +AEL+ A +   + D+RDE+  +   +     
Sbjct: 245 V---DLKNRLIEIYEIPYSTTVEAVLDNLAELVKAGKAKEISDVRDETDLNGLKLTIELK 301

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ +P+ LM  +F  + ++  F  N NVL     P+V+ +  ++ EWL  RR  + R ++
Sbjct: 302 RAAEPEALMNRLFKQTSLQANFACNFNVLID-GRPRVLGVKQLIGEWLNFRRTCVRRETA 360

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDE---IIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           F +Q    ++ +L+GL    L+ID+   II    NE    P +   F++   Q + I  +
Sbjct: 361 FDLQEKQAKLHLLEGLNTIMLDIDKAIRIIRETENETDVIPNLCRGFAIDAVQAEYIAEI 420

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR+L +    +  ++   L  E  ++ + L S      +I   +++V E + +      
Sbjct: 421 KLRNLNREYLLKRTADRSELTEEIAQLQNRLASTSLLDAEIIRTLQQVAEKYGQ-----D 475

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT   +     + T +  + +      + ++    +   +       L  K+ D +   
Sbjct: 476 RRTVLIDAGEITEITGEDLIEDYRLKYFLTAHGYLKKLPLTSLRSAGELKIKDEDEIISE 535

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           + A   D I++ +     Y +    +   +       L   L+   +    +++     +
Sbjct: 536 IEAGNRDEIMVFTDQANVYKISGHEIKDCKPSELGEYLPGLLDFAPEEKVIYLHVPGEYV 595

Query: 615 ---LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKL 670
              +   + G    V  S     T++ K     S +  +  +          ++    K+
Sbjct: 596 GDFMFAFANGKVARVPVSAYKTKTKRRKLVAAYSDKSPLVGIEFAPENKSYVLISNLSKV 655

Query: 671 LIFSIDQIP--EMSRGKGVRLQSYKDGGIS 698
           LIF  +QIP       +GV++ S K   + 
Sbjct: 656 LIFDSEQIPAKVTRNNQGVQVMSAKRNSVV 685


>gi|284803675|emb|CBJ21243.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 310

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 155/308 (50%), Positives = 222/308 (72%), Gaps = 1/308 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EP V PS+F NLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGSEREPAVMPSRFLNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLN 342
           ++T F +N
Sbjct: 300 LQTSFGIN 307


>gi|284049789|emb|CBJ16553.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 155/310 (50%), Positives = 222/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT   I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPTARQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|332148446|dbj|BAK20072.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148452|dbj|BAK20075.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148456|dbj|BAK20077.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148458|dbj|BAK20078.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148460|dbj|BAK20079.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148470|dbj|BAK20084.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148472|dbj|BAK20085.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148474|dbj|BAK20086.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148476|dbj|BAK20087.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148478|dbj|BAK20088.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 306

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 153/307 (49%), Positives = 222/307 (72%), Gaps = 1/307 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PY
Sbjct: 181 ELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + +
Sbjct: 240 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 299

Query: 336 ETRFPLN 342
           +T F +N
Sbjct: 300 QTSFGIN 306


>gi|160905588|gb|ABX52352.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905590|gb|ABX52353.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905664|gb|ABX52390.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 157/310 (50%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|332711871|ref|ZP_08431801.1| DNA topoisomerase IV subunit A [Lyngbya majuscula 3L]
 gi|332349199|gb|EGJ28809.1| DNA topoisomerase IV subunit A [Lyngbya majuscula 3L]
          Length = 753

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 199/698 (28%), Positives = 333/698 (47%), Gaps = 43/698 (6%)

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELILQGVDEDAV 152
           +Y+++VRL Q F  RYPL+ G GNFG++D D  AA RYTE R++ V A+ +L  + E  V
Sbjct: 1   MYEAMVRLVQDFSTRYPLLDGHGNFGSVDNDPPAAMRYTETRLSPVGAQALLSEIGEATV 60

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D ++    EPVV P++ P LL NG SGIAVGMAT+IP HN+ EI +  +ALID P +
Sbjct: 61  DFIDNFDSSQQEPVVLPAQLPVLLLNGCSGIAVGMATNIPPHNLAEIVDGLIALIDRPNL 120

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW------ 266
             EKL E I GPDFPTGG IV   E I ++Y  GRG   +R    +E +  G        
Sbjct: 121 PDEKLWELIPGPDFPTGGEIVA-AEGIRDAYTTGRGSIPIRGITKLETIQVGRKKRGQRR 179

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            IVV+E+PYQV K+  IEK+A L+   RI  + DIRDES  +   V+    R   P  ++
Sbjct: 180 AIVVSELPYQVHKAAWIEKVAALVNQGRIEGISDIRDESDREGMRVVVELKRDAQPSAVL 239

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           + ++  + ++T F   +  L     P+ + L  +L+ +++ R + L R+ ++     +RR
Sbjct: 240 QQLYKQTPLQTNFGAILLTLVD-GQPRQLTLRQLLESFISFREQTLTRQYTYEQSQKERR 298

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLE 443
           + ++ GLL +   +D +I I+RN            ++ +L+E Q DAIL + +R L  LE
Sbjct: 299 LHLVDGLLASLNQLDAMIDILRNAPDGTTAKLSLQNQLNLSEIQADAILAMPMRRLTGLE 358

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK--------------- 488
             ++++E + L    E++  LLN  ++    +  ++R +K  +                 
Sbjct: 359 REKLETEGEELSQRLEQLHQLLNDRRELLKALKKDLRSLKRKYGDPRRTIINSIASTEKK 418

Query: 489 ---STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
               T    R     +  +            ++ +    S+    R   +    L     
Sbjct: 419 LEQPTAAQPRSKKSAQPQKTPDTLPNAPTEPEQTLLEFTSHGYVQRQSATTQPKLPKSIK 478

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN---HNQDI 602
           +  D +  A    TT  +++++  GKAY +   ++    G  + I L+  L     ++ +
Sbjct: 479 QGEDFVVQAQLLLTTQELMVITGSGKAYPVKIRDIPPAAGRKQGIPLVKLLPNSAQSETV 538

Query: 603 VTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK-VTG 658
           V  F      +   L++++ +G    V  SE+   T +G    K  ++++++      T 
Sbjct: 539 VAHFRVPDDLENFTLVLLTHQGKIKRVSVSELTKLTNRGMLLTKFRNDDQLQYANLSTTA 598

Query: 659 DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             V V   N +LL F ++   +P M R  +G +    K G    V C  + E    +  +
Sbjct: 599 TQVVVATSNGRLLRFEVNDKQLPIMGRSAQGNQALRLK-GKEKLVGCVVLGEEENLLLVS 657

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKG-FPRSGKFLS 752
            + Y +        L  RG +G+   +    + G  +S
Sbjct: 658 EQGYGKRLPVQAIRLANRGDLGTQALQFKTAKDG-LVS 694


>gi|332148494|dbj|BAK20096.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 303

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 150/302 (49%), Positives = 219/302 (72%), Gaps = 1/302 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+P
Sbjct: 181 PELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + 
Sbjct: 240 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 299

Query: 335 ME 336
           ++
Sbjct: 300 LQ 301


>gi|160905606|gb|ABX52361.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905668|gb|ABX52392.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 152/310 (49%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+++I +
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|225017578|ref|ZP_03706770.1| hypothetical protein CLOSTMETH_01506 [Clostridium methylpentosum
           DSM 5476]
 gi|224949638|gb|EEG30847.1| hypothetical protein CLOSTMETH_01506 [Clostridium methylpentosum
           DSM 5476]
          Length = 744

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 190/700 (27%), Positives = 344/700 (49%), Gaps = 31/700 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+   +   LE+ Y+ YA+S I  RA+P++ DGFKP HR++++ M +MGL  GA   KSA
Sbjct: 26  VEEQLITDTLEKNYMPYAMSVILSRALPEI-DGFKPSHRKLLYTMYKMGLLTGAR-TKSA 83

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFG---NIDGDSAAAYRYT 132
            IVG+ + +L+PHGDQ++Y+++VRL++ +    +P +  +GNFG   + D  + AA RYT
Sbjct: 84  NIVGQTM-RLNPHGDQTIYETMVRLSRGYQALLHPYVDSKGNFGKAYSRDM-AYAASRYT 141

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++  +   + + +D+D V+F   Y+    EP + P+ FP++L N   GIAV MA++I 
Sbjct: 142 EAKLDPICNELFRDIDKDTVEFVPNYDNSTKEPRLLPTTFPSILVNSNVGIAVSMASAIC 201

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
             N+QE+CEA +A + N E  + +    + GPDFP GG +V++   + + YR GRG  RV
Sbjct: 202 PFNLQEVCEATIAFMKNSECDLTE---ILKGPDFPGGGFLVQNPSELEKIYRTGRGSIRV 258

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R+  ++      CI +TEIP       +++KI +L+   ++  + D+RDE+      +
Sbjct: 259 RSRYNYDKSN---NCIEITEIPPTTTVEAIMDKIIDLVKQNKVKEISDMRDETDLSGLKL 315

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R  DPD LM  +F L+ +E  +  N NVL     P+V+ +  +L EW+A R E +
Sbjct: 316 TIDLKRGTDPDRLMRRLFKLTPLEDSYSCNFNVLI-AGTPRVLGVYDLLDEWVAFRVECI 374

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDE---IIAIIRNEDKPKPVMVSRFSLTENQVD 429
            RR  F +     ++ +L+GL    L+ID+   I+     E +  P ++  F + E Q +
Sbjct: 375 KRRVWFELTKKKEKLHLLQGLQKILLDIDKAIRIVRETEEEKEVVPNLMIGFGIDEIQAE 434

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +  ++LR L +    +  +E+D L+ E   ++ +L   ++    I  E+++V + +++ 
Sbjct: 435 YVAEIKLRHLNREYILKRTAEIDQLIQEIADMEEILADKRRVKQIIIKELKDVIKKYAQP 494

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+ F     +     ++  I   P+ V +S +G+ + +   S+ +S  H  + D
Sbjct: 495 -----RRSLFI-YPDSVFDDEEEEEIPNYPVHVFLSEQGYFKKITPQSLRMSGEHKLKED 548

Query: 550 SLKIALH-AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD---IVTA 605
              I          +L  +   + Y          +       +   L   ++   +  A
Sbjct: 549 DRMITHIETTNNTDLLFFTDKMQVYKYNLSQFPDTKASVLGEYVPAKLGFEEEERLVGMA 608

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
              D +  +L     G    V        T + K     S +  +  +     D    + 
Sbjct: 609 LTKDYSGNILFFFENGKVAKVPIKSYETKTNRKKLANAYSDKSPLIALFPEAEDGEYIIT 668

Query: 665 GENRKLLIFSID--QIPEMSRGKGVRLQSYKDGGISDVIC 702
             N+K+L+FS     +      +GV++ +       + + 
Sbjct: 669 SNNQKVLLFSSAMIAVKATKNTQGVQVMTLNKNCTVESVV 708


>gi|121591636|ref|ZP_01678880.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 2740-80]
 gi|121546507|gb|EAX56720.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 2740-80]
          Length = 367

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/369 (43%), Positives = 244/369 (66%), Gaps = 8/369 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKE-----GSDIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFR 374
           + RR+    
Sbjct: 357 SFRRKRYAH 365


>gi|160905544|gb|ABX52330.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905546|gb|ABX52331.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905548|gb|ABX52332.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905550|gb|ABX52333.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905554|gb|ABX52335.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905562|gb|ABX52339.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905564|gb|ABX52340.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905568|gb|ABX52342.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905592|gb|ABX52354.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905594|gb|ABX52355.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905596|gb|ABX52356.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905598|gb|ABX52357.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905600|gb|ABX52358.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905602|gb|ABX52359.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905604|gb|ABX52360.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905620|gb|ABX52368.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905622|gb|ABX52369.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905624|gb|ABX52370.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905636|gb|ABX52376.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905638|gb|ABX52377.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905640|gb|ABX52378.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905642|gb|ABX52379.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905646|gb|ABX52381.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905648|gb|ABX52382.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905650|gb|ABX52383.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905656|gb|ABX52386.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905658|gb|ABX52387.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905660|gb|ABX52388.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905670|gb|ABX52393.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905676|gb|ABX52396.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905678|gb|ABX52397.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905680|gb|ABX52398.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 153/310 (49%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|160905614|gb|ABX52365.1| gyrase subunit alpha [Bacillus tequilensis]
          Length = 309

 Score =  413 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 152/310 (49%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ ++P+I+I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSESPDITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|284803667|emb|CBJ21239.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 304

 Score =  413 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/305 (50%), Positives = 220/305 (72%), Gaps = 1/305 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPL 341
           T F +
Sbjct: 300 TSFGI 304


>gi|160905644|gb|ABX52380.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905662|gb|ABX52389.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  413 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/310 (49%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ DNP+I+I +
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSDNPDITIPE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|220928824|ref|YP_002505733.1| DNA gyrase/topoisomerase IV subunit A [Clostridium cellulolyticum
           H10]
 gi|219999152|gb|ACL75753.1| DNA gyrase/topoisomerase IV subunit A [Clostridium cellulolyticum
           H10]
          Length = 728

 Score =  413 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 200/736 (27%), Positives = 362/736 (49%), Gaps = 36/736 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +N+   ++   LE  Y+ YA+S I  RAIP++ DGFKP HR++++ M +M L  GA 
Sbjct: 1   MTHKNLVEQNITETLESNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMSLLTGAK 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAA 127
             KS+ IVG+ + KL+PHGD ++Y+++VR+ +      +P +  +GNFG   + D    A
Sbjct: 60  -TKSSNIVGQTM-KLNPHGDMAIYETMVRMTRGNNALLHPFVDSKGNFGKQYSRDMK-FA 116

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++ ++ E I + +D++ V+F D Y+    EPV+ P+ FP +L N   GIAVGM
Sbjct: 117 APRYTEAKLDKICEEIFKDIDKNTVEFVDNYDGTMKEPVLLPTTFPTILVNSNQGIAVGM 176

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           A++I S N+ EIC+   ALID+  + +E    Y+  PDF +GG ++ S + I + Y+ GR
Sbjct: 177 ASNICSFNLVEICKTTSALIDDENVVLED---YLKAPDFSSGGQLIYSAKEIRDIYKNGR 233

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           GGF+VRAR+  ++      CI + EIPY      +I++I ELI   +I  + D+RDE+  
Sbjct: 234 GGFKVRARYKYDKEN---NCIEIIEIPYTTTVEAIIDQIIELIKGGKIREITDVRDETDL 290

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     ++ DPD+LM  +F L+ ++  F  N N+L     P+VM +  IL EWL  
Sbjct: 291 SGLKLTIDLRKNTDPDILMNKLFKLTPLQDSFSCNFNILI-NGRPRVMGVRTILNEWLNF 349

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           R E + R+ S+ ++    ++ +L GL           +II     E K  P +++ F + 
Sbjct: 350 RVECIKRQISYDIEKKSDKLHLLMGLKKILLDIDKAIQIIRGTEQEAKVVPNLMTGFGID 409

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q D I  ++LR+L K        E +NL+ E  ++  +  +  +    I  ++ E+ +
Sbjct: 410 EIQADYIAEIKLRNLNKEYILNRVGETENLIKEIAELKDIHGNDNKVKKIIQKQLSEIAK 469

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            F K      RRT      +  +    +  IE   + V ++   +++ +   S+  +  H
Sbjct: 470 KFGKP-----RRTEIISDEQV-EEITTEHFIEDYNLKVFLTEHNYLKKIPLVSLRANPEH 523

Query: 545 FKEGDS-LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQD 601
             + +  +   +  H    +L+ +     Y      +   +     E +  L+ L++++ 
Sbjct: 524 KLKDEDIIIQEIETHNKADLLMFTNKFNVYKSRIYEIPDCKASSLGEYLTNLLGLDNDEK 583

Query: 602 IVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
           I+     ++    +L     G    +E S     T + K      S   +  ++ +T D 
Sbjct: 584 IIYITATNNYEGYMLFFYENGKGAKIEMSGYATKTNRKKLANAYYSGSPLIRMIFITEDI 643

Query: 660 HVAVVGENRKLLIFSIDQIPE--MSRGKGVRLQSYKDGGIS-DVICFKICEGLTWIDSAG 716
            +  +    KLL+F+ + I        +GV++ + K G +  D+           + +  
Sbjct: 644 ELIAISSINKLLVFNTNSINPKTTKNSQGVQILTSKKGSLMTDIKTL----DEMVLSNVD 699

Query: 717 RSYNRSENDLLGWLGK 732
               ++   +  ++ +
Sbjct: 700 YYRTKNIPAVGYYIKE 715


>gi|160905572|gb|ABX52344.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905578|gb|ABX52347.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905584|gb|ABX52350.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905634|gb|ABX52375.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
          Length = 309

 Score =  413 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/310 (49%), Positives = 225/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|332148480|dbj|BAK20089.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|332148490|dbj|BAK20094.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/301 (50%), Positives = 218/301 (72%), Gaps = 1/301 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ +
Sbjct: 121 DNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PY
Sbjct: 181 ELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + +
Sbjct: 240 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 299

Query: 336 E 336
           +
Sbjct: 300 Q 300


>gi|56159870|gb|AAV80746.1| gyrase subunit A [Bacillus sp. NRRL B-23956]
          Length = 312

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/312 (50%), Positives = 224/312 (71%), Gaps = 1/312 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVLSM 348
           T F +NM  L  
Sbjct: 300 TSFGINMLALVD 311


>gi|40786593|gb|AAR89868.1| putative DNA gyrase/topoisomerase A subunit [Oryza sativa Japonica
           Group]
          Length = 418

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/341 (44%), Positives = 217/341 (63%), Gaps = 8/341 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E V  V L     E Y+AYA+S +  RA+PD+RDG KPVHRRI++AM EMGL     F
Sbjct: 78  VKERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 137

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VY++LVR+AQ F  RYPL+ G GNFG+ID D  AA RYT
Sbjct: 138 RKCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYT 197

Query: 133 EARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           E R+  V       +D       VDF   ++    EP + P++ P+LL NG+SGIAVGMA
Sbjct: 198 ECRLD-VGCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMA 256

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +    +I+NPE ++++LLE + GPDFPTGG IV   + I+E+Y+ GRG
Sbjct: 257 TNIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIV-GNQGILEAYKTGRG 315

Query: 249 GFRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
              +R +  +E  +V      I++ E+PYQ  KS L+E+IAEL+  K +  + DIRDES 
Sbjct: 316 RVVMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESD 375

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
                V+    R  DP +++ +++  + +++ F  NM    
Sbjct: 376 RSGMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVATG 416


>gi|284049787|emb|CBJ16552.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 314

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/315 (49%), Positives = 224/315 (71%), Gaps = 2/315 (0%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+
Sbjct: 121 DGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV 
Sbjct: 181 EYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T 
Sbjct: 240 KARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTS 299

Query: 339 FPLNMNVLSMGRVPQ 353
           F +N+  L     P+
Sbjct: 300 FGINLLALVD-GQPK 313


>gi|129921061|gb|ABO31934.1| GyrA [Bacillus amyloliquefaciens]
          Length = 309

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/310 (50%), Positives = 222/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLI KIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIGKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|160905558|gb|ABX52337.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905574|gb|ABX52345.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905576|gb|ABX52346.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905580|gb|ABX52348.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905582|gb|ABX52349.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905630|gb|ABX52373.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905632|gb|ABX52374.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|293627261|gb|ADE58305.1| DNA gyrase alpha subunit [Bacillus subtilis subsp. inaquosorum]
          Length = 309

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/310 (49%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|332148488|dbj|BAK20093.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|332148496|dbj|BAK20097.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 154/301 (51%), Positives = 219/301 (72%), Gaps = 1/301 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ +
Sbjct: 121 DNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PY
Sbjct: 181 ELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + +
Sbjct: 240 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 299

Query: 336 E 336
           +
Sbjct: 300 Q 300


>gi|160905610|gb|ABX52363.1| gyrase subunit alpha [Bacillus mojavensis]
 gi|160905652|gb|ABX52384.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 309

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +NM  L
Sbjct: 300 TSFGINMLAL 309


>gi|160905570|gb|ABX52343.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
          Length = 309

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/310 (50%), Positives = 225/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITISE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +++   G   IVVTEIPYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIDQTSSGKERIVVTEIPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|160905560|gb|ABX52338.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 309

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +NM  L
Sbjct: 300 TYFGINMLAL 309


>gi|332148484|dbj|BAK20091.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 302

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/301 (49%), Positives = 218/301 (72%), Gaps = 1/301 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PY
Sbjct: 181 ELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + +
Sbjct: 240 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 299

Query: 336 E 336
           +
Sbjct: 300 Q 300


>gi|47094547|ref|ZP_00232209.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes str.
           4b H7858]
 gi|47017079|gb|EAL07950.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes str.
           4b H7858]
          Length = 440

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/435 (35%), Positives = 273/435 (62%), Gaps = 5/435 (1%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+KSA+ VG VIG 
Sbjct: 1   MGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFRKSAKTVGNVIGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTEAR++ ++  +L+
Sbjct: 61  YHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTEARLSPISAELLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP HN+ EI EA + 
Sbjct: 121 DIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPPHNLTEIIEAVIK 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +DNP  + + +++ + GPDFPTGGII    + I ++Y+ G+G   VR++  +E++  G 
Sbjct: 181 RLDNPLSTTDDIMKIVKGPDFPTGGIIQG-IDGIRKAYQTGKGRVVVRSKTEIEDIRGGR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      +     +  + + +
Sbjct: 240 KQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAVELKKDANAEGV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  ++  + P++M +  +L  ++ H++E++ +RS + ++    
Sbjct: 300 LNYLFKNTDLQVSYNFNMVAINK-KRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARA 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL+ A   +DE+I +IR     +     + +++  +E Q +AI++L+L  L   
Sbjct: 359 RQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEAIVSLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAE 457
           + ++++SE  +L  +
Sbjct: 419 DIHELQSEAKSLAEQ 433


>gi|326201734|ref|ZP_08191605.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium papyrosolvens DSM
           2782]
 gi|325988334|gb|EGD49159.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium papyrosolvens DSM
           2782]
          Length = 728

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 199/704 (28%), Positives = 349/704 (49%), Gaps = 31/704 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +N+   ++   LE  Y+ YA+S I  RAIP++ DGFKP HR++++ M +M L  GA 
Sbjct: 1   MTHKNLVEQNITDTLESNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMSLLAGAK 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAA 127
             KS+ IVG+ + KL+PHGD ++Y+++VR+ +      +P I  +GNFG   + D    A
Sbjct: 60  -TKSSNIVGQTM-KLNPHGDMAIYETMVRMTRGNNALLHPFIDSKGNFGKQYSRDMK-FA 116

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++ ++ E I + +D++ VDF D Y+    EPV+ P+ FP++L N   GIAVGM
Sbjct: 117 APRYTEAKLDKLCEEIFKDIDKNTVDFVDNYDGTMKEPVLLPTTFPSILVNSNQGIAVGM 176

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           A++I S N++EIC+   ALID+  I IE    Y+  PDF +GG ++ S + I + Y  GR
Sbjct: 177 ASNICSFNLEEICKTTSALIDDENIVIED---YLQAPDFSSGGQLIYSAKEIRDIYNNGR 233

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F+VRA++        + CI + EIPY      +I++I ELI   +I  + D+RDE+  
Sbjct: 234 GSFKVRAKYN---YDNKNNCIEIVEIPYTTTVEAIIDQIIELIKGGKIKEITDVRDETDL 290

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     ++ DPD+LM+ +F L+ ++  F  N N+L     P+VM +  IL EWL+ 
Sbjct: 291 SGLKLTLDLRKNTDPDMLMKKLFKLTPLQDSFNCNFNILI-NGRPRVMGVRTILNEWLSF 349

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           R + + R+  + +Q    ++ +L GL           EII     E    P ++S F + 
Sbjct: 350 RVDCIKRQILYDIQKKSDKLHLLMGLKKILLDIDKAIEIIRKTEQEVMVVPNLISGFDID 409

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q + I  ++LR+L K        E D+L+ E  ++     + K+    I  ++ E+ +
Sbjct: 410 QIQAEYIAEIKLRNLNKEYILNRVGETDSLIKEIAELKDTHGNHKKVKKIIQKQLSEIAK 469

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            F K      RRT      +  +    +  IE   + + ++ + +++ +   S+  +  H
Sbjct: 470 KFGKP-----RRTEIISDEQV-EEITTEHFIEDYNLKIFLTEQNYLKKIPLVSLRANPEH 523

Query: 545 FKEGDSLK-IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQD 601
             + +      +  H    +LL +     Y      +   +     E +  L+ L+ ++ 
Sbjct: 524 KLKDEDTIVQEIETHNKADLLLFTNKFNVYKSKIYEIPDCKASSLGEYLTNLLGLDSDEK 583

Query: 602 IVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
           I+     D+    +L     G    ++ S     T + K      +   +  +   T D 
Sbjct: 584 IIYITATDNYEGYMLFFYENGKGAKIDLSGYATKTNRKKLANAYYNGSPLIRMFFATEDI 643

Query: 660 HVAVVGENRKLLIFSIDQ--IPEMSRGKGVRLQSYKDGGISDVI 701
            +  +    K+L+F+ +   +      +GV++ + K G I   I
Sbjct: 644 ELIAISSINKMLVFNTESIGVKTTKNSQGVQILTSKKGSIMTGI 687


>gi|289672551|ref|ZP_06493441.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           FF5]
          Length = 345

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 145/350 (41%), Positives = 235/350 (67%), Gaps = 8/350 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   P
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKP 345


>gi|160905672|gb|ABX52394.1| gyrase subunit alpha [Bacillus atrophaeus]
          Length = 309

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDIPIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|166214662|ref|ZP_02240697.1| DNA gyrase/topoisomerase IV, A subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166204152|gb|EDR48632.1| DNA gyrase/topoisomerase IV, A subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
          Length = 265

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 140/270 (51%), Positives = 189/270 (70%), Gaps = 6/270 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIP 274
           GRG   +RAR  VE +   G   I+V EIP
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIP 265


>gi|309806046|ref|ZP_07700069.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           03V1-b]
 gi|308167565|gb|EFO69721.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           03V1-b]
          Length = 487

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 172/488 (35%), Positives = 290/488 (59%), Gaps = 5/488 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG ++   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGG-LIIGNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKTQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNM-APVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR     K     +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L A       ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKNRLEAVIVKEFEDVKKS 479

Query: 486 FSKSTDLG 493
             +  +  
Sbjct: 480 LDQHVEHK 487


>gi|28916600|gb|AAO59533.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 157/310 (50%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           SLVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SLVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI G DFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGRDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|160905666|gb|ABX52391.1| gyrase subunit alpha [Bacillus atrophaeus]
          Length = 309

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 225/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|47079978|gb|AAT10175.1| gyrase A [Bacillus mojavensis]
          Length = 309

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMELIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +NM  L
Sbjct: 300 TSFGINMLAL 309


>gi|28916592|gb|AAO59529.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI G DFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGRDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|160905566|gb|ABX52341.1| gyrase subunit alpha [Bacillus vallismortis]
          Length = 309

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/310 (49%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG +PVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLQPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NPEI+I+ 
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQD 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEVIPGPDFPTAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      V+    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|313633454|gb|EFS00280.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL N1-067]
          Length = 407

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 148/410 (36%), Positives = 253/410 (61%), Gaps = 6/410 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTSEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E++++ + GPDFPTGGII    + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQG-IDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +     V    + P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNF-NMVAIHNKRPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            H++E++ +RS   ++    R  IL+GL+ A   +DE+I +IR     + 
Sbjct: 355 EHQKEIITKRSEHDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRD 404


>gi|62946516|gb|AAY22401.1| GyrA [Bacillus subtilis]
          Length = 311

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/312 (49%), Positives = 224/312 (71%), Gaps = 1/312 (0%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV 
Sbjct: 181 EVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T 
Sbjct: 240 KAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTS 299

Query: 339 FPLNMNVLSMGR 350
           F +N+  L  G+
Sbjct: 300 FGINLLALVDGQ 311


>gi|56112326|gb|AAV71141.1| GyrA [Bacillus amyloliquefaciens]
          Length = 311

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/312 (49%), Positives = 223/312 (71%), Gaps = 1/312 (0%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+
Sbjct: 121 DGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV 
Sbjct: 181 GIIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T 
Sbjct: 240 KARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTS 299

Query: 339 FPLNMNVLSMGR 350
           F +N+  L  G+
Sbjct: 300 FGINLLALVDGQ 311


>gi|284049779|emb|CBJ15407.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 308

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 156/309 (50%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+
Sbjct: 121 DGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV 
Sbjct: 181 EYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T 
Sbjct: 240 KARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTS 299

Query: 339 FPLNMNVLS 347
           F +N+  L 
Sbjct: 300 FGINLLALV 308


>gi|332148482|dbj|BAK20090.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 153/303 (50%), Positives = 218/303 (71%), Gaps = 1/303 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D+ D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYHD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+I +
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITIPE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+R+ES  +   ++    R  +  +++  ++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGIPDLREESDRNGMRIVIEIRRDANAHVILNHLYKQTALQ 299

Query: 337 TRF 339
           T F
Sbjct: 300 TSF 302


>gi|332148492|dbj|BAK20095.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 301

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 153/301 (50%), Positives = 218/301 (72%), Gaps = 1/301 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 T 337
            
Sbjct: 300 R 300


>gi|332653603|ref|ZP_08419348.1| DNA gyrase subunit A [Ruminococcaceae bacterium D16]
 gi|332518749|gb|EGJ48352.1| DNA gyrase subunit A [Ruminococcaceae bacterium D16]
          Length = 750

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 197/699 (28%), Positives = 346/699 (49%), Gaps = 29/699 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   V    +   LE  Y+ YA+S I  RAIP++ DGFKP HR++++ M +M L  GA  
Sbjct: 21  LHAEVLEQPITETLELNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYQMKLLGGAR- 78

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDG-DSA-AAY 129
            KSA +VG+ + KL+PHGD ++YD++VRL++ +    +P +  +GNFG +   D A AA 
Sbjct: 79  TKSANVVGQTM-KLNPHGDAAIYDTMVRLSRGYGALLHPFVDSKGNFGKVYSRDMAWAAS 137

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE R+  +   + + +D+D VDF D Y+ +  EP + P+ FPN+L +   GIAVGMA+
Sbjct: 138 RYTEVRLDAICGELFRDIDQDTVDFVDNYDGKMKEPTLLPTTFPNVLVSANQGIAVGMAS 197

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           ++   N+ E+C+  +A + +PE     L+  + GPD PTGG ++   +++ E YR GRG 
Sbjct: 198 NLCGFNLGEVCDTTIAYLKDPE---CDLMATLKGPDLPTGGELIYDEKALGEIYRTGRGS 254

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           F+VR++W   +       I + EIPY      +++K+AELI A +I  + D+RDE+    
Sbjct: 255 FKVRSKWRYLKSE---NLIEIYEIPYSTTSEAIMDKVAELIKAGKIKEIADMRDETDLSG 311

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R  DPD LM  +F  + +      N N+L    +P+VM +  IL+EW A R 
Sbjct: 312 LKLTIDLKRGTDPDKLMAKLFRATPLMDSQSCNFNILI-AGMPRVMGVREILEEWTAWRM 370

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE---IIAIIRNEDKPKPVMVSRFSLTEN 426
           + + RR    M+  + ++ +LKGL    L+ID    II     + +  P ++  F + + 
Sbjct: 371 DCVRRRVYHEMKKKEDKLHLLKGLRRILLDIDRAIAIIRETEEDAEVVPNLMIGFGIDQI 430

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + + ++RLR++ K    +   E++ L  E   + + +N  K+    I  E+ +VK+ +
Sbjct: 431 QAEYVADIRLRNINKEYILKRTQEVEALEGEIADLQATVNDPKRIRKIITKELTDVKKKY 490

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           ++      RRT         +   Q+      P+ + +S  G+++ +   S+ +++    
Sbjct: 491 AQP-----RRTDIV-YEHMLEEEPQEDETPDYPVNLFLSREGYLKKITPQSLRMASDQKY 544

Query: 547 EGDSLKI-ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD---I 602
           +          A   D +L+ +   + Y          +       L   L+   +   +
Sbjct: 545 KEGDGPFLQWEATNRDELLVFTDKQQCYKTRLSEFDDSKASVLGDYLPTKLSMEAEERVL 604

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                 D + +LL     G    VE S     TR+ K     S +  +   + +  D  +
Sbjct: 605 WACIPGDYSGQLLFFFENGKVARVELSAYQTQTRRKKLTGAYSDKSPLVSALLLREDLEM 664

Query: 662 AVVGENRKLLIFSIDQI-PEMSR-GKGVRLQSYKDGGIS 698
           AV   + + +IF    + P+ +R  +GV + + K   + 
Sbjct: 665 AVYSSDGRCMIFHTAALAPKTTRTTQGVNVMALKPKRVV 703


>gi|13810767|gb|AAK40028.1|AF272018_1 DNA gyrase subunit A [Bacillus licheniformis]
          Length = 305

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 150/306 (49%), Positives = 223/306 (72%), Gaps = 1/306 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D +D++D Y+ 
Sbjct: 61  MAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKDTIDYQDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP+I++ +L+E 
Sbjct: 121 SEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEI 180

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE   G   I++TEIPYQV K+
Sbjct: 181 IPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKA 239

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           RLIEKIA+L+  K+I  + D+RDES  +   ++    R  + ++L+ +++  + ++T F 
Sbjct: 240 RLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDANANVLLNNLYKQTALQTSFG 299

Query: 341 LNMNVL 346
           +N+  L
Sbjct: 300 INLLAL 305


>gi|309792011|ref|ZP_07686489.1| DNA gyrase, A subunit [Oscillochloris trichoides DG6]
 gi|308226005|gb|EFO79755.1| DNA gyrase, A subunit [Oscillochloris trichoides DG6]
          Length = 1340

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 194/652 (29%), Positives = 329/652 (50%), Gaps = 28/652 (4%)

Query: 120  NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            +IDGD AAA RYTEAR++ +AE +L  +D++ VDFRD ++    EP V P   PNLL NG
Sbjct: 629  SIDGDPAAAMRYTEARLSTIAEELLFDIDKNTVDFRDNFDGSYREPSVLPGLLPNLLLNG 688

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             +GIAVGMAT+IP HN++E+C+A + LIDNPE+++E+L++ I GPDFPT G I+   E I
Sbjct: 689  AAGIAVGMATNIPPHNLKELCDAIIYLIDNPEVTVEELIKIIPGPDFPTAGNIL-GTEGI 747

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            + +Y  GRG   +RA+  +EE  RG++ IVVTE+PYQV K+RL E+IAEL   K+I  + 
Sbjct: 748  LAAYGTGRGQITLRAKAHIEEANRGAFNIVVTELPYQVNKARLQERIAELAKDKKIEGIR 807

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
            D+RDES      ++    +   P  ++ +++  + M+T F +NM  L    R P+V+ L 
Sbjct: 808  DVRDESDRAGMRLVILLKQDAQPKRVLNALYKHTQMQTTFGINMLALVDQGRQPKVLTLK 867

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KP 415
             +L+E++AHR+EV+ RR+ + ++    R  IL+GL IA  NID II  IR        + 
Sbjct: 868  RMLQEYVAHRQEVIRRRTEYDLEKARARAHILEGLKIALDNIDAIIRTIRESRSVEIARN 927

Query: 416  VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             ++S FSL+E Q  AIL+++LR L  LE  +I+ E   ++    +++ +L + ++    I
Sbjct: 928  NLISNFSLSEIQAQAILDMQLRRLAALERKKIEDEYAEVIKLIAELEDILANPRRVLQMI 987

Query: 476  ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
              +++ +KE +        RRT       A      + +I    + + +++RG+++    
Sbjct: 988  QQDLQRLKEKYGDE-----RRTRII--PDASGEVSDEDLIPDVRVLITLTDRGYVKRQAT 1040

Query: 533  -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
                  +     + A+  +E D ++  L   + D +L  +  GK Y L A  +       
Sbjct: 1041 DVYRTQRRGGRGVRAMTTREQDLVRHLLTCGSHDNLLFFTDKGKVYQLKAHEVPDSARTA 1100

Query: 588  E--AIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
            +   +  LI L+  + + +           L++ + +G     + SE       G   + 
Sbjct: 1101 KGLPLVNLISLDPGEQVTSMLAVPDYDGEYLVMATHRGKIKRTQLSEYSQVRSNGLIAIG 1160

Query: 644  VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            +   + +  V    G + V +     + + F    +  M R   GV   +  +G     +
Sbjct: 1161 LEEGDVLGWVRVSNGHEDVLMTTVKGQTIRFQQQAVRSMGRPATGVNGINLSEGDRVISM 1220

Query: 702  CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               I +    +    R + +           R   G +  +  P   +   +
Sbjct: 1221 ELAIPDSD-LLVVTARGFGKRTELGDYPTKGRATGGVITIRLRP-GDEVAGA 1270



 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/108 (61%), Positives = 80/108 (74%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK VS+   +   YL+YA+S I  RA+PD RDG KPV RRI++ M +MG     A+KKSA
Sbjct: 6   VKPVSITTEMRTAYLSYAMSVIVSRALPDARDGMKPVQRRIMYGMWDMGFRANTAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           RIVG+V+GK+HPHGD SVYD+L RLAQP+  RYPLI GQGNFG   GD
Sbjct: 66  RIVGDVLGKMHPHGDSSVYDALARLAQPWNMRYPLIDGQGNFGCFTGD 113



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 78/204 (38%), Gaps = 11/204 (5%)

Query: 517  KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                 V+ ++RG I+  +           L A+  +EGD L     ++  + +L+ +  G
Sbjct: 1127 DGEYLVMATHRGKIKRTQLSEYSQVRSNGLIAIGLEEGDVLGWVRVSNGHEDVLMTTVKG 1186

Query: 571  KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
            +        + S       +   I+L+    +++  +      LLVV+++G     E  +
Sbjct: 1187 QTIRFQQQAVRSMGRPATGV-NGINLSEGDRVISMELAIPDSDLLVVTARGFGKRTELGD 1245

Query: 631  IIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMSRG-KG 686
                 R   G   +++   +++     V    +   V     ++  S  +I ++SR  +G
Sbjct: 1246 YPTKGRATGGVITIRLRPGDEVAGAAIVNQRSLLTFVTAAGVVMRTSAGEISQLSRATQG 1305

Query: 687  VRLQSYKDGGISDVICFKICEGLT 710
            V + +  DG     +  +  +  T
Sbjct: 1306 VTVVNPDDGDRVAALSVEEPDEDT 1329



 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 55/153 (35%), Gaps = 3/153 (1%)

Query: 510  LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
             +  ++       +   +  +RS+   +  ++ ++  EGD +     A     +L+++  
Sbjct: 1176 HEDVLMTTVKGQTIRFQQQAVRSMGRPATGVNGINLSEGDRVISMELAIPDSDLLVVTAR 1235

Query: 570  GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
            G       G+  + +G      + I L    ++  A + +    L  V++ G        
Sbjct: 1236 GFGKRTELGDYPT-KGRATGGVITIRLRPGDEVAGAAIVNQRSLLTFVTAAGVVMRTSAG 1294

Query: 630  EIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
            EI   +R   G T +     +++  +     D 
Sbjct: 1295 EISQLSRATQGVTVVNPDDGDRVAALSVEEPDE 1327


>gi|327335378|gb|AEA49884.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 307

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 151/308 (49%), Positives = 222/308 (72%), Gaps = 1/308 (0%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+++I +L+
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV 
Sbjct: 181 EVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T 
Sbjct: 240 KAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTS 299

Query: 339 FPLNMNVL 346
           F +N+  L
Sbjct: 300 FGINLLAL 307


>gi|259129711|gb|ACV95365.1| topoisomerase II subunit A [Brucella melitensis]
          Length = 292

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 155/293 (52%), Positives = 205/293 (69%), Gaps = 1/293 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA +VGEV+GK HPHGD S+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+ +V E +L  +D+D V+F+
Sbjct: 61  DALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +ALIDNP I + 
Sbjct: 121 DNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELS 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R  +E +      I++TEIPY
Sbjct: 181 ELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           QV K+ +IEK+AEL   KRI  + D+RDES  +   V+    R    D+++  
Sbjct: 240 QVNKASMIEKMAELARDKRIDGISDLRDESDREGYRVVVELKRDAVADVVLNQ 292


>gi|167749706|ref|ZP_02421833.1| hypothetical protein EUBSIR_00664 [Eubacterium siraeum DSM 15702]
 gi|167657329|gb|EDS01459.1| hypothetical protein EUBSIR_00664 [Eubacterium siraeum DSM 15702]
          Length = 743

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 189/699 (27%), Positives = 342/699 (48%), Gaps = 31/699 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+   +   L E Y+ YA+S I  RA+P++ DGFKP HR++++ M +MGL  GA   KSA
Sbjct: 27  VENQPITDTLTENYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMYKMGLLTGAR-TKSA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAAAYRYT 132
            IVG+ + KL+PHGD ++Y+++VRLA+      +P +  +GNFG   + D  S AA RYT
Sbjct: 85  NIVGQTM-KLNPHGDMAIYETMVRLARGNEALLHPYVDSKGNFGKAYSRDM-SFAASRYT 142

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++  +   I   +D D VDF   Y+   +EPV+ P++FP +L N   GIAV MA++I 
Sbjct: 143 EAKLDPICAEIFADIDRDIVDFVPNYDNSMTEPVLLPTRFPAVLVNNNVGIAVSMASNIC 202

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           S N+ E+CE A AL+   +     ++  + GPDFP GG I++    +   Y  GRG  +V
Sbjct: 203 SFNLSEVCETAAALM---KNLEHDIVSTLKGPDFPGGGFILQDENELRRIYATGRGSVKV 259

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+++      + + CI VTEIP       +I+KI E +   ++  + D+RDES      +
Sbjct: 260 RSKYI---YDKTANCIEVTEIPPTTTIEAIIDKIVEQVKLGKLKEISDVRDESDLSGLKI 316

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R  D + +M+ +F ++ ++  F  N N+L  G +P+VM +  IL++W   R   +
Sbjct: 317 TIDLKRGQDSEAVMKKLFRITPLQDVFSCNFNILV-GGMPKVMGVAEILEQWTDFRITCV 375

Query: 373 FRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
            R++ F +     ++ +L GL           +II    ++ +  P ++  F + E Q +
Sbjct: 376 KRKTKFELARKKEKLHLLTGLKKILLDIDKAIKIIRETEDDAEVVPNLMIGFGIDETQAE 435

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            + +++LR++ K    +   E+D+L  E   ++ +L+S ++    I  E+ ++ + + K 
Sbjct: 436 YVADIKLRNINKGYILKRIEEIDSLKEEIADMEDILSSERRVKQIIISELGDIAKKYGKP 495

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALHFKEG 548
                 R T       D+    +  I   P+ +  +  G+ + +   S+ +S     KE 
Sbjct: 496 ------RKTMFIYGTEDEENEAEEEIPDYPVNLFFTREGYFKKITPQSLRMSGEQKLKEN 549

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAF 606
           D +           +L  +   + Y   A +   G+       L   ++L+ ++ I+   
Sbjct: 550 DEIIETYDGSNRAELLFFTDKFQVYKARACDFEDGKASVMGDYLPVKLELDPDERIIKMI 609

Query: 607 VYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
             +  +  L++    G    V  +     TR+ K     +    +  +  + GD    + 
Sbjct: 610 AAEDYSGTLVMFFENGKCAKVPMASFETKTRRKKLANAYNDGSPLVSMTLIDGDCEFMLS 669

Query: 665 GENRKLLIFSIDQI-PEMSR-GKGVRLQSYKDGGISDVI 701
            E  K++IF+   I P+ +R  +GV++       +   +
Sbjct: 670 SEAGKVMIFNTVLILPKAARDTQGVQVMRLTRAKLRSAV 708


>gi|125972827|ref|YP_001036737.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium thermocellum
           ATCC 27405]
 gi|125713052|gb|ABN51544.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium thermocellum
           ATCC 27405]
          Length = 727

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 191/700 (27%), Positives = 346/700 (49%), Gaps = 31/700 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           ++  N+    +   LE+ Y+ YA+S I  RAIP++ DG KP HR++++ M +MGL  G  
Sbjct: 1   MLTNNLIEQRIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGEK 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAA 127
             KSA +VG+ + KL+PHGD ++Y++LVRL +       P +  +GNFG   + D    A
Sbjct: 60  -TKSANVVGQTM-KLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMK-YA 116

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE ++ ++ E + + +D+D VDF D Y+    EP + P+ FP +L N   GIAVGM
Sbjct: 117 APRYTEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGM 176

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           A+SI S N+ E+C AA+  I   +     L+  +  PDFPTGG ++ +   + E Y  GR
Sbjct: 177 ASSICSFNLVEVCNAAVEFI---KDENTDLVGILKAPDFPTGGQLIYNEREMREIYEKGR 233

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA++  ++      CI + EIPY      +I+ IA+L+ + +I  + D+RDE+  
Sbjct: 234 GTFKLRAKYRYDKANS---CIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDL 290

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   +     R+ DPD LM  ++ L+ +E  F  N N+L     P VM + GILKEW+  
Sbjct: 291 NGLKIALDIKRNADPDTLMNKLYKLTPLEDSFSCNFNILI-NGRPMVMGVRGILKEWVNF 349

Query: 368 RREVLFRRSSFRMQAIDRRVEI---LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           R + + R++ + +    +++ I   L+ +L+      +II     E    P ++  F + 
Sbjct: 350 RMDCIKRQTLYDIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLMKGFGID 409

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q + +  ++LR+L K    +  SE+++L  E  +++ L  S K+    I  ++ E+ +
Sbjct: 410 QAQAEFVAEIKLRNLNKEYILKRVSEIESLKKEIAELNELYGSEKKIKKLIIKQLEEIAK 469

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-SAL 543
            + +       R T   +    +    + +IE   + + ++ + +++ +   S+      
Sbjct: 470 KYGQP------RRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQNYLKKIPLTSLRTSPEH 523

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQD 601
             KEGD +   L  H    +LL S     Y +    +   +     E +  ++ L   ++
Sbjct: 524 KLKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIEDCKASSLGEFLSNVLSLEEGEE 583

Query: 602 IVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGD 659
           I+     D     ++     G    +        T + K     +   ++  +   +  +
Sbjct: 584 IIHMVATDDYKGYMIFGFENGKVAKIVLESYATKTNRKKLANAYNGLSRLVYIGHILEDE 643

Query: 660 HVAVVGENRKLLIFSIDQI-PEMSR-GKGVRLQSYKDGGI 697
            +       K+LIF+   I P+ +R  +GV++   K G +
Sbjct: 644 ELVAFSSLNKVLIFNTSNINPKTTRDSQGVQVLKSKKGSV 683


>gi|256005840|ref|ZP_05430790.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           2360]
 gi|255990204|gb|EEU00336.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           2360]
 gi|316940937|gb|ADU74971.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           1313]
          Length = 727

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 191/700 (27%), Positives = 345/700 (49%), Gaps = 31/700 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +   N+    +   LE+ Y+ YA+S I  RAIP++ DG KP HR++++ M +MGL  G  
Sbjct: 1   MSTNNLIEQRIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGEK 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAA 127
             KSA +VG+ + KL+PHGD ++Y++LVRL +       P +  +GNFG   + D    A
Sbjct: 60  -TKSANVVGQTM-KLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMK-YA 116

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE ++ ++ E + + +D+D VDF D Y+    EP + P+ FP +L N   GIAVGM
Sbjct: 117 APRYTEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGM 176

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           A+SI S N+ E+C AA+  I   +     L+  +  PDFPTGG ++ +   + E Y  GR
Sbjct: 177 ASSICSFNLVEVCNAAVEFI---KDENTDLVGILKAPDFPTGGQLIYNEREMREIYEKGR 233

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA++  ++      CI + EIPY      +I+ IA+L+ + +I  + D+RDE+  
Sbjct: 234 GTFKLRAKYRYDKANS---CIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDL 290

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   +     R+ DPD LM  ++ L+ +E  F  N N+L     P VM + GILKEW+  
Sbjct: 291 NGLKIALDIKRNADPDTLMNKLYKLTPLEDSFSCNFNILI-NGRPMVMGVRGILKEWVNF 349

Query: 368 RREVLFRRSSFRMQAIDRRVEI---LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           R + + R++ + +    +++ I   L+ +L+      +II     E    P ++  F + 
Sbjct: 350 RMDCIKRQTLYDIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLMEGFGID 409

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q + +  ++LR+L K    +  SE+++L  E  +++ L  S K+    I  ++ E+ +
Sbjct: 410 QAQAEFVAEIKLRNLNKEYILKRVSEIESLKKEIAELNELYGSEKKIKKLIIKQLEEIAK 469

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-SAL 543
            + +       R T   +    +    + +IE   + + ++ + +++ +   S+      
Sbjct: 470 KYGQP------RRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQNYLKKIPLTSLRTSPEH 523

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQD 601
             KEGD +   L  H    +LL S     Y +    +   +     E +  ++ L   ++
Sbjct: 524 KLKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIEDCKASSLGEFLSNVLSLEEGEE 583

Query: 602 IVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGD 659
           I+     D     ++     G    +        T + K     +   ++  +   +  +
Sbjct: 584 IIHMVATDDYKGYMIFGFENGKVAKIVLESYATKTNRKKLANAYNGLSRLVYIGHILEDE 643

Query: 660 HVAVVGENRKLLIFSIDQI-PEMSR-GKGVRLQSYKDGGI 697
            +       K+LIF+   I P+ +R  +GV++   K G +
Sbjct: 644 ELVAFSSLNKVLIFNTSNINPKTTRDSQGVQVLKSKKGSV 683


>gi|281417026|ref|ZP_06248046.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum JW20]
 gi|281408428|gb|EFB38686.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum JW20]
          Length = 727

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 191/700 (27%), Positives = 345/700 (49%), Gaps = 31/700 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +   N+    +   LE+ Y+ YA+S I  RAIP++ DG KP HR++++ M +MGL  G  
Sbjct: 1   MSTNNLIEQRIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGEK 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAA 127
             KSA +VG+ + KL+PHGD ++Y++LVRL +       P +  +GNFG   + D    A
Sbjct: 60  -TKSANVVGQTM-KLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMK-YA 116

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE ++ ++ E + + +D+D VDF D Y+    EP + P+ FP +L N   GIAVGM
Sbjct: 117 APRYTEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGM 176

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           A+SI S N+ E+C AA+  I   +     L+  +  PDFPTGG ++ +   + E Y  GR
Sbjct: 177 ASSICSFNLVEVCNAAVEFI---KDENTDLVGILKAPDFPTGGQLIYNEREMREIYEKGR 233

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA++  ++      CI + EIPY      +I+ IA+L+ + +I  + D+RDE+  
Sbjct: 234 GTFKLRAKYRYDKANS---CIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDL 290

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   +     R+ DPD LM  ++ L+ +E  F  N N+L     P VM + GILKEW+  
Sbjct: 291 NGLKIALDIKRNADPDTLMNKLYKLTPLEDSFSCNFNILI-NGRPMVMGVRGILKEWVNF 349

Query: 368 RREVLFRRSSFRMQAIDRRVEI---LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           R + + R++ + +    +++ I   L+ +L+      +II     E    P ++  F + 
Sbjct: 350 RMDCIKRQTLYDIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLMKGFGID 409

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q + +  ++LR+L K    +  SE+++L  E  +++ L  S K+    I  ++ E+ +
Sbjct: 410 QAQAEFVAEIKLRNLNKEYILKRVSEIESLKKEIAELNELYGSEKKIKKLIIKQLEEIAK 469

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-SAL 543
            + +       R T   +    +    + +IE   + + ++ + +++ +   S+      
Sbjct: 470 KYGQP------RRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQNYLKKIPLTSLRTSPEH 523

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQD 601
             KEGD +   L  H    +LL S     Y +    +   +     E +  ++ L   ++
Sbjct: 524 KLKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIEDCKASSLGEFLSNVLSLEEGEE 583

Query: 602 IVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGD 659
           I+     D     ++     G    +        T + K     +   ++  +   +  +
Sbjct: 584 IIHMVATDDYKGYMIFGFENGKVAKIVLESYATKTNRKKLANAYNGLSRLVYIGHILEDE 643

Query: 660 HVAVVGENRKLLIFSIDQI-PEMSR-GKGVRLQSYKDGGI 697
            +       K+LIF+   I P+ +R  +GV++   K G +
Sbjct: 644 ELVAFSSLNKVLIFNTSNINPKTTRDSQGVQVLKSKKGSV 683


>gi|330980281|gb|EGH78416.1| DNA gyrase subunit A [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 806

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 188/718 (26%), Positives = 321/718 (44%), Gaps = 104/718 (14%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMA
Sbjct: 1   MRYTEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMA 60

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  LALIDNPE+++++L++YI GPDFPT   I+  R  I+E+YR GRG
Sbjct: 61  TNIPPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRG 119

Query: 249 GFRVRARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
              +RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES 
Sbjct: 120 RIYMRARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESD 179

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   V+    R   P++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ 
Sbjct: 180 KDGMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVR 238

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------- 416
           HRREV+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P             
Sbjct: 239 HRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWE 298

Query: 417 ---------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                                         ++ L+  Q  AIL LRL  L  LE  ++  
Sbjct: 299 SSAVVEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLG 358

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E   +L +  ++  +LNS  +    I  E+  ++  +  +     RRT   +   A    
Sbjct: 359 EYQEILNQIGELIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD---ARLDL 410

Query: 510 LQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
               +I +E   V IS+ G+         ++ +      SA   K+ D +   L A++  
Sbjct: 411 TLGDLITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHT 470

Query: 562 RILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------- 612
            +L+ S+ GK Y L    +        G  +  L+ L+  + I T    D          
Sbjct: 471 TLLMFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADE 530

Query: 613 -----------------------------------KLLVVSSKGNAFIVEESEIIANTRK 637
                                               + + ++ G                
Sbjct: 531 EGEALEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSS 590

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   L++   + +       G+  + +  +  K+  F    +  M R  +GVR     +G
Sbjct: 591 GLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEG 650

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +     EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 651 QKLISMLI-PEEGSQILTASERGYGKRTAISEFPEYKRGGQGGIAMVSNERNGRLVGA 707



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++L  S +
Sbjct: 613 QEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMR-LPEGQKLISMLIPEEGSQILTASER 671

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L+   + 
Sbjct: 672 GYGKRTAISEFPEYKRGGQGGIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVG 731

Query: 677 QIPEMSR-GKGVRLQSYKDGG 696
           ++  + R  +GV L       
Sbjct: 732 EVSSLGRNTQGVTLIKLASDE 752


>gi|320104794|ref|YP_004180385.1| DNA topoisomerase [Isosphaera pallida ATCC 43644]
 gi|319752076|gb|ADV63836.1| DNA topoisomerase (ATP-hydrolyzing) [Isosphaera pallida ATCC 43644]
          Length = 906

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 205/798 (25%), Positives = 326/798 (40%), Gaps = 73/798 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS-EMGLDFGAAFK 73
           E V+ VSL  A   RYL YALS I  RA+PD+RDG KPV RRI++AM  ++       F 
Sbjct: 27  EVVEEVSLAEATRSRYLNYALSVITSRALPDVRDGLKPVQRRILYAMWADLKAGATGRFV 86

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VGEV+   HPHGDQS+YD+LVR+AQ F  R PLI G GNFG+IDGD  AA RYTE
Sbjct: 87  KSAAVVGEVMKSYHPHGDQSIYDALVRMAQDFSLRCPLIEGYGNFGSIDGDPPAAMRYTE 146

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  AE +L  + E  V+FR  Y     EPVV P+++PNLL NG SGIAVGMAT+IP 
Sbjct: 147 ARLTAAAEELLVELREQTVEFRANYAATTREPVVLPARWPNLLVNGASGIAVGMATTIPP 206

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+C A +AL+DNPEI+I+KL  ++ GPDFPTGG+++ S E +   Y  G G  ++R
Sbjct: 207 HNLKEVCNALIALLDNPEITIDKLHRHLPGPDFPTGGVVLNSAEDLRGIYANGHGTIKLR 266

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
             W      +    +V+T IPY V+K  L+ KI ELI   ++P L +++D S E +RIVL
Sbjct: 267 GTWEPHPERK--EAVVITSIPYGVEKDDLVAKIGELIGKGQVPQLVNVKDLSDEAIRIVL 324

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                  + +  M  ++  + ++    +NM  L      Q +  +       A   + L 
Sbjct: 325 D-LRPGANAEAAMAYLYKNTSLQINHHVNMTCLLPALPNQRVGDNADATAVRATLADELE 383

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
                  +                  +D+      +  +   +        + +++ ++ 
Sbjct: 384 PFDLDESEWDADAAASDPASTTLAAGLDQGEERSASVPERLDLKTMLSHFLDFRMEVVIR 443

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS---------GKQQWNQIACEIREVKE 484
                LR++       E   ++  +      L            K         ++    
Sbjct: 444 KLRHELRQVRRRIHILEGFEIVFNRLDEAIRLIRASNGKADAAPKLATRFGLSALQADAI 503

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAM-----IEKEPITVVISNRGWIRSLKSHSVD 539
           + +K   LG+          A++    + +      E     ++  +   I         
Sbjct: 504 LETKLYRLGKLEIDEILRELAERRARAEELRRLLGDEAARKGLIRDDLKRIAKTYGTPRR 563

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
                       +   +    D  ++++ DG      +   +            I +   
Sbjct: 564 TRIEGPAPEVEFREEDYIVDEDAWVIVTRDGWIKRQRSFTDIE----------SIRVRDG 613

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV-- 654
             +   F   +   L V++S+G A+     +++  T  G        +   E++  VV  
Sbjct: 614 DRVGWLFRARARRTLTVLTSRGMAYTTRVHDLVMTTGHGEPISKLFSLEDNERIVGVVCH 673

Query: 655 --------------------------KVTGDH------------VAVVGENRKLLIFSID 676
                                       +G+             V VV    K L FS+ 
Sbjct: 674 DPRCLPVHADPADHAAPKRQGVLLATAASGEESSSDNSQPQPPYVVVVTAGGKALRFSLA 733

Query: 677 QIPEMSRGKGVRLQSYKDG--GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
            +  +S  KG  +            V           + +   +           +    
Sbjct: 734 ALAAVSTRKGRAVMRPDPDRPNDEVVAALVSNGHDQVMLATTSARVIRFAVTEIPVVSGP 793

Query: 735 GVGSLVPKGFPRSGKFLS 752
             G L  +    + + L 
Sbjct: 794 AKGVLAIRLQDETDRVLG 811



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 99/437 (22%), Positives = 177/437 (40%), Gaps = 56/437 (12%)

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
           VP+ + L  +L  +L  R EV+ R+    ++ + RR+ IL+G  I +  +DE I +IR  
Sbjct: 420 VPERLDLKTMLSHFLDFRMEVVIRKLRHELRQVRRRIHILEGFEIVFNRLDEAIRLIRAS 479

Query: 411 D---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           +      P + +RF L+  Q DAIL  +L  L KLE  +I  EL    A  E++  LL  
Sbjct: 480 NGKADAAPKLATRFGLSALQADAILETKLYRLGKLEIDEILRELAERRARAEELRRLLGD 539

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
              +   I  +++ + + +         R T  E    +    ++  I  E   V+++  
Sbjct: 540 EAARKGLIRDDLKRIAKTYGTP------RRTRIEGPAPEVEFREEDYIVDEDAWVIVTRD 593

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           GWI+  +S + D+ ++  ++GD +     A     + +L++ G AYT    +L+   GHG
Sbjct: 594 GWIKRQRSFT-DIESIRVRDGDRVGWLFRARARRTLTVLTSRGMAYTTRVHDLVMTTGHG 652

Query: 588 EAIQLLIDLNHNQDIVTAFVYDS----------TC------------------------- 612
           E I  L  L  N+ IV    +D                                      
Sbjct: 653 EPISKLFSLEDNERIVGVVCHDPRCLPVHADPADHAAPKRQGVLLATAASGEESSSDNSQ 712

Query: 613 ----KLLVVSSKGNAFIVEESEIIAN-TRKGKTFLKVSSE---EKMKLVVKVTG-DHVAV 663
                ++VV++ G A     + + A  TRKG+  ++   +   +++   +   G D V +
Sbjct: 713 PQPPYVVVVTAGGKALRFSLAALAAVSTRKGRAVMRPDPDRPNDEVVAALVSNGHDQVML 772

Query: 664 VGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNR 721
              + +++ F++ +IP +    KGV     +D       +        T      R    
Sbjct: 773 ATTSARVIRFAVTEIPVVSGPAKGVLAIRLQDETDRVLGVLLTDRAQDTLTVKTSRGGTL 832

Query: 722 SENDLLGWLGKRGGVGS 738
                   L  RGG G+
Sbjct: 833 ELKAGKHPLTSRGGKGT 849


>gi|302864518|ref|YP_003833155.1| DNA gyrase subunit A [Micromonospora aurantiaca ATCC 27029]
 gi|302567377|gb|ADL43579.1| DNA gyrase, A subunit [Micromonospora aurantiaca ATCC 27029]
          Length = 1259

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/647 (27%), Positives = 299/647 (46%), Gaps = 36/647 (5%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TE ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT I
Sbjct: 562  TECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKI 621

Query: 192  PSHNVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN++EI  A    +++PE     ++E LLE + GPDFPT G ++  +  I ++YR GR
Sbjct: 622  PPHNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHG-LIVGQAGIQDAYRTGR 680

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
            G  R+RA   VEE  RG   +VV+E+PYQV    L E+IAELI   ++  + DIRDES+ 
Sbjct: 681  GSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSG 740

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                 ++    R     +++ +++  + ++  F  NM  L    VP+ + L   ++ ++ 
Sbjct: 741  RTGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVD-GVPRTLNLAQFIRYYVE 799

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSL 423
            H+ EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     +           +
Sbjct: 800  HQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIRLLDI 859

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             E Q  AIL+++LR L  LE  +I  +L  L  E   +  +L   ++Q   ++ E+ E+ 
Sbjct: 860  DEVQATAILDMQLRRLAALERQRILDDLAKLEVEIADLKDILAKPERQRRIVSEELGEIV 919

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------S 535
              +        RRT              + +I +E + V I+  G+ +  K         
Sbjct: 920  AKWGD-----DRRTKIVPFDGE---VSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRR 971

Query: 536  HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLL 593
                +S    ++ D +       T D IL  +  G+ Y   A  L       +   +  L
Sbjct: 972  GGKGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANL 1031

Query: 594  IDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            +    ++ I       +      L++ +  G        E  +N   G   + +  E+++
Sbjct: 1032 LAFQPDEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDEL 1091

Query: 651  KLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
               V V   D + +V +N + + F+     +  M R   GV    +  G    +    + 
Sbjct: 1092 VGAVLVAPEDDLLLVSKNAQAIRFNATDEALRPMGRATSGVIGMRF-SGEDELLAVEVVR 1150

Query: 707  EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            EGL  + +    Y +        +  RGG G L  K   R G  + +
Sbjct: 1151 EGLDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGA 1197



 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 63/160 (39%), Positives = 90/160 (56%), Gaps = 16/160 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      + 
Sbjct: 24  HDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYV 83

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RY  
Sbjct: 84  KCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRY-- 141

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
                    +   V    V      +       V P   P
Sbjct: 142 --------CLAADVRVRTV------DGTVRIGDVVPDAAP 167



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 78/223 (34%), Gaps = 19/223 (8%)

Query: 501  EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
            +        ++    +  P  V+ +  G ++  +    D      + A++ ++ D L  A
Sbjct: 1035 QPDEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDELVGA 1094

Query: 555  LHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            +     D +LL+S + +A    A +      G   +  + +  +   +++   V      
Sbjct: 1095 VLVAPEDDLLLVSKNAQAIRFNATDEALRPMGRATSGVIGMRFSGEDELLAVEVVREGLD 1154

Query: 614  LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRK 669
            +LV ++ G A      E     R GK  L     E+   +   V +   D +  +  N  
Sbjct: 1155 VLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPEDELFAITSNGG 1214

Query: 670  LLIFSIDQIPEMSRGK-----GVRLQSYKDGGISDVICFKICE 707
            ++   +  +    R +     GV+L    DG     I     E
Sbjct: 1215 VIRTPVKPVR---RTRDRNTMGVKLMDLPDGVTIVAIARNADE 1254


>gi|160905674|gb|ABX52395.1| gyrase subunit alpha [Bacillus pumilus]
          Length = 306

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 148/306 (48%), Positives = 216/306 (70%), Gaps = 1/306 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     FKKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR+++++  IL+ + +D +D++D
Sbjct: 61  AMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMRYTEARLSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NPE++ ++
Sbjct: 121 NYDGSEREPMVMPARFPNLLVNGATGIAVGMATNIPPHQLGEVIDGVLAISQNPEMTTQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L++ I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   IV+ EIPYQ
Sbjct: 181 LMDIIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAKSDIEETSSGKQRIVINEIPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R     +L+  ++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDATVHVLLNHLYKQTTLQ 299

Query: 337 TRFPLN 342
           T F +N
Sbjct: 300 TSFGIN 305


>gi|303238190|ref|ZP_07324726.1| DNA topoisomerase (ATP-hydrolyzing) [Acetivibrio cellulolyticus
           CD2]
 gi|302594236|gb|EFL63948.1| DNA topoisomerase (ATP-hydrolyzing) [Acetivibrio cellulolyticus
           CD2]
          Length = 727

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 199/734 (27%), Positives = 343/734 (46%), Gaps = 43/734 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +    +   LE+ Y+ YA+S I  RAIP++ DG KP HR++++ M +MGL  G  
Sbjct: 1   MSKSRLIEQKIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGGR 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAA 127
             KSA +VG+ + KL+PHGD ++Y+++VRL +      +P +  +GNFG   + D    A
Sbjct: 60  -TKSANVVGQTM-KLNPHGDMAIYETMVRLTRGNDALLHPYVDSKGNFGKQYSRDM-HFA 116

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE ++ ++ E + + +D+DAVDF D Y+    EP + P  FPN+L +   GIAVGM
Sbjct: 117 APRYTEVKLDKICEELFRDLDKDAVDFVDNYDGTMKEPTLLPITFPNILVSANQGIAVGM 176

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           A++I S N+ E+CE A+  I+N      ++ +Y+  PDF +GG ++   + I E Y  GR
Sbjct: 177 ASNICSFNLNEVCETAIQFINNEN---IEVSDYLKAPDFTSGGQLIYKEKDIKEIYNTGR 233

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F+VR ++  ++      CI + EIPY      +I+ I EL+   +I  + D+RDE+  
Sbjct: 234 GSFKVRGKYRYDKEN---NCIEIYEIPYTTTTEAIIDSIIELVKNNKIKDILDVRDETDL 290

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   V     R+ DPD LM  ++ L+ +E  F  N N+L     P+V+ + GIL  W+  
Sbjct: 291 DGLKVTIDIRRNTDPDALMNKLYKLTPLEDSFGCNFNLLI-NGRPKVLGIKGILANWIEF 349

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE---IIAIIRNEDKPKPVMVSRFSLT 424
           R + + R++ F +     R+ +L GL    L+ID+   +I     +    P ++  F + 
Sbjct: 350 RVDCIKRQTLFDINKKSDRLHLLVGLKKILLDIDKAIRLIRETEEDAMVIPNLMDGFGVD 409

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q + I  ++LR+L K       SE+D L  E  ++  +  + K+    I  ++ EV +
Sbjct: 410 HVQAEFIAEIKLRNLNKEYILDKVSEIDKLEKEIAELKDIYGNDKKIKKIIVKQLGEVSK 469

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            + K      RRT        ++ T +  + +      +  +    +   +         
Sbjct: 470 KYGKP-----RRTDILHEEHVEEITQEHFIEDYNLKIFLTDHNYLKKIPLTSLRTSPEHK 524

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA--IQLLIDLNHNQDI 602
            K+ DS+   +  H    +LL S     Y +    +   +       +  L+ L  ++ I
Sbjct: 525 LKDDDSIVQEIETHNKADLLLFSNKQTVYKIRIYEIDDCKASSLGDYLTNLLGLEADERI 584

Query: 603 VTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
           +     D     ++     G    ++       T + K     S   K+  +  +T D  
Sbjct: 585 INIVATDDYKGYMIFAFENGKVAKIDLESYATKTNRKKLANAYSDLSKIIYMQYITEDEE 644

Query: 661 VAVVGENRKLLIFSIDQIPEMSR--GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +      +K+LIFS   I   S    +GV++   K G              + + +  R 
Sbjct: 645 LVAFSSLKKVLIFSTSNINPKSTRDSQGVQVLKEKKG--------------SVMTTVKRL 690

Query: 719 YNRSENDLLGWLGK 732
              S  DL  +  K
Sbjct: 691 SEVSFKDLDYYRTK 704


>gi|319826932|gb|ADV74760.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 152/308 (49%), Positives = 222/308 (72%), Gaps = 1/308 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+ 
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E 
Sbjct: 121 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 180

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+
Sbjct: 181 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 239

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F 
Sbjct: 240 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFG 299

Query: 341 LNMNVLSM 348
           +N+  L  
Sbjct: 300 INLLALVD 307


>gi|329725098|gb|EGG61592.1| DNA gyrase/topoisomerase IV, A subunit [Staphylococcus epidermidis
           VCU144]
          Length = 405

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 159/400 (39%), Positives = 255/400 (63%), Gaps = 2/400 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  L  ID P+I+I +L++YI GPDFPTGGII    E I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQG-IEGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   E +  G   ++VTEIPY+V KS L++KI EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   ++  SD++  +     V      P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDANSESIKNYLYKNSDLQISYNF-NMVAISEGRPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
             R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN   
Sbjct: 359 TNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKN 398


>gi|325523551|gb|EGD01857.1| DNA topoisomerase IV subunit A [Burkholderia sp. TJI49]
          Length = 672

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 240/665 (36%), Positives = 360/665 (54%), Gaps = 38/665 (5%)

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+  
Sbjct: 1   AQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGS 60

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
             EP   PS+ P +L NG SGIAVG+AT IPSHN++E+  AA+ALI NP++S  +L+  I
Sbjct: 61  FEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLSHAELMNLI 120

Query: 222 IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR 281
            GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ RG W +VVTE+P      +
Sbjct: 121 PGPDFPGGGQIISSDAEIAAAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSGQK 180

Query: 282 LIEKIAELII------------------AKRIPLLEDIRDESAED--VRIVLFPKNRSLD 321
           ++E+I EL                       + LL+ +RDES ++  VR+V  PK+R++D
Sbjct: 181 VLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTID 240

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
               + S+   + +E+   LN+ ++     P    L  IL EW+  R++ + RR   R+ 
Sbjct: 241 QTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLLTILDEWVKFRQQTMTRRCRHRLG 300

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
             D R+ IL+G +I +LNIDE+I IIR  D+PK  ++S F LTE Q D IL +RLR L +
Sbjct: 301 KGDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALMSAFGLTERQADDILEIRLRQLAR 360

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE+ +I+ EL+ L  EK K++ LL +       +  EI    + +        RRT   +
Sbjct: 361 LEKIKIEKELEALRDEKAKLEDLLANDNAMKRLMIKEIEADAKQYGD-----DRRTLIQQ 415

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
             RA      +A +  EP+TVV+S +GW+R+LK H +D ++  FK GDSL  A    T D
Sbjct: 416 EKRATF----EAKVVDEPVTVVVSQKGWVRALKGHGLDPASFSFKAGDSLYAAFQCRTPD 471

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           R++   + G+ Y++    L  GRG G  +  LI+L     ++  +   +   LL+ SS G
Sbjct: 472 RLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSHLMHYYAAAADQPLLLASSNG 531

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIP 679
             FI +  ++++  + GK F+ + +       + V      VA +    +LL+F ID++ 
Sbjct: 532 FGFIAKVGDMVSRVKAGKAFMTIDAGAVPLAPMPVLPNATQVACLSSGGRLLVFGIDEMK 591

Query: 680 EM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKR 733
            +   G+GV L +  D   + V    I      +   GR     +  L        +GKR
Sbjct: 592 TLSGGGRGVTLMAL-DDKETLVQALAIDPAGVVLIGTGRGGKVQDETLSYAGLAPHVGKR 650

Query: 734 GGVGS 738
              G 
Sbjct: 651 ARKGR 655


>gi|28916618|gb|AAO59542.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 152/307 (49%), Positives = 222/307 (72%), Gaps = 1/307 (0%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+V
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
             + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E
Sbjct: 121 GSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
            I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K
Sbjct: 181 VIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 239

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           ++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F
Sbjct: 240 AKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQAALQTSF 299

Query: 340 PLNMNVL 346
            +N+  L
Sbjct: 300 GINLLAL 306


>gi|153820158|ref|ZP_01972825.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae NCTC 8457]
 gi|126509298|gb|EAZ71892.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae NCTC 8457]
          Length = 343

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 153/347 (44%), Positives = 232/347 (66%), Gaps = 8/347 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKE-----GSDIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   P
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRP 343


>gi|319826934|gb|ADV74761.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 152/307 (49%), Positives = 222/307 (72%), Gaps = 1/307 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+ 
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E 
Sbjct: 121 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 180

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+
Sbjct: 181 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 239

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F 
Sbjct: 240 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFG 299

Query: 341 LNMNVLS 347
           +N+  L 
Sbjct: 300 INLLALV 306


>gi|56159834|gb|AAV80728.1| gyrase subunit A [Bacillus subtilis]
          Length = 317

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 150/311 (48%), Positives = 222/311 (71%), Gaps = 2/311 (0%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+A
Sbjct: 8   LPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMA 67

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  +
Sbjct: 68  QDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSE 127

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+++I +L+E I 
Sbjct: 128 REPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELMEVIP 187

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
           GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++L
Sbjct: 188 GPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKL 246

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           IEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N
Sbjct: 247 IEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIN 306

Query: 343 MNVLSMGRVPQ 353
           +  L     P+
Sbjct: 307 LLALVD-GQPK 316


>gi|145308239|gb|ABP57383.1| gyrase A [Brucella abortus]
          Length = 284

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 154/284 (54%), Positives = 202/284 (71%), Gaps = 1/284 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA +VGEV+GK HPHGD S+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+ +V E +L  +D+D V+F+
Sbjct: 61  DALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +ALIDNP I + 
Sbjct: 121 DNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELS 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R  +E +      I++TEIPY
Sbjct: 181 ELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           QV K+ +IEK+AEL+  KRI  + D+RDES  +   V+    R 
Sbjct: 240 QVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRD 283


>gi|160905612|gb|ABX52364.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 307

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 155/308 (50%), Positives = 222/308 (72%), Gaps = 1/308 (0%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV 
Sbjct: 181 ELIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T 
Sbjct: 240 KARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTS 299

Query: 339 FPLNMNVL 346
           F +NM  L
Sbjct: 300 FGINMLAL 307


>gi|13810777|gb|AAK40033.1|AF272023_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|13810779|gb|AAK40034.1|AF272024_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 309

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 152/309 (49%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
           + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I
Sbjct: 121 EREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVI 180

Query: 222 IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR 281
            GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++
Sbjct: 181 PGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 239

Query: 282 LIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +
Sbjct: 240 LIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGI 299

Query: 342 NMNVLSMGR 350
           N+  L  G+
Sbjct: 300 NLLALVDGQ 308


>gi|326791468|ref|YP_004309289.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
 gi|326542232|gb|ADZ84091.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
          Length = 714

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 192/753 (25%), Positives = 344/753 (45%), Gaps = 76/753 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++ V   ++   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M +M L  G   
Sbjct: 1   MDQFVIKQNITETLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMYKMNLIKGLR- 58

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY-PLISGQGNFG---NIDGDSAAA 128
            KSA IVG+ + KL+PHGD ++Y+++VRL + +     P +  +GNFG   + D  + AA
Sbjct: 59  TKSANIVGQTM-KLNPHGDGAIYETMVRLTKGYSALITPFVDSKGNFGKVYSRDM-AYAA 116

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++++   +   ++EDAVDF D Y+    EPV+ P++FPN+L N   GIAVGMA
Sbjct: 117 ARYTEAKLSEICTEVFNDIEEDAVDFVDNYDGTLKEPVLLPTRFPNILVNPNQGIAVGMA 176

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           ++  S N++E+C A +A + N +  + +   +II PDFPTGG I+     + E    G+G
Sbjct: 177 SNFCSFNLKEVCNATIAYLKNEDADVLE---HIIAPDFPTGGQIILDETEMREVLETGKG 233

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            F+VRA++   +      CI + EIPY      +I+KI EL+ A +I  + D+RDE+   
Sbjct: 234 SFKVRAKYHYIK---KENCIEIIEIPYTTTVEAIIDKIEELVKAGKIKEITDVRDETDLS 290

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     RS DP++LM+ +F  + +E  F  N N+L    +P+V+    I+KEW   R
Sbjct: 291 GLKLTIDLKRSTDPEMLMQKLFKSTPLEDSFSCNFNLLI-NGMPKVLGFKEIIKEWCEFR 349

Query: 369 REVLFRRSSFRMQAIDRRVEI---LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           ++ + R+  F ++ +++R  +   LK +L+      EI+     E    P +++ F ++E
Sbjct: 350 QQCVVRKYRFAIEKMEKRYHLLIGLKQILLDIDKAIEIVRHTEKEKDVVPRLMAHFEISE 409

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q D +  ++LR L K    +   ELD L  +  ++  ++ + K+    I+ E++ +++ 
Sbjct: 410 MQADYVAEIKLRHLNKQYILETLKELDELEKKIAELKDIIENPKKVKKVISDELKVIQKK 469

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        R+T   + +   K   ++ + +         ++   +              
Sbjct: 470 FGTE-----RQTEVIKHTEVVKVKHEELIEDYNVKLFFTDHQYLKKITLVSLRSSGEQKL 524

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIV 603
           KE D++   + A     +LL +     Y L    +   +    G  +  L+DL   + I+
Sbjct: 525 KEDDTIIQEIEASNRSDLLLFTNKSNVYKLKLHEIEDTKASQFGVYLPNLLDLEEGEQIL 584

Query: 604 TAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
                 D T  +    S G    V  +     T + K       +     +  V  + + 
Sbjct: 585 AIHSTTDYTGYIAFGFSTGKVAKVPVAAYETKTNRKKLIKAFYGKSPCVGIAFVEEEDIL 644

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           ++                            ++     V+   + E               
Sbjct: 645 LLT---------------------------REDDKVGVVPVVLLEE-------------- 663

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
                    KR   G        + G  K + +
Sbjct: 664 -------KQKRDANGVQALSITKKIGMKKLVKA 689


>gi|28916608|gb|AAO59537.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 306

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 155/307 (50%), Positives = 221/307 (71%), Gaps = 1/307 (0%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+V
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQ F  RY L+ G GNFG++D DSAAA RYTEARM+++A  IL+ + +D +D++D Y+
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDSDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
             + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ DNPEI+ ++L+E
Sbjct: 121 GAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSDNPEITNQELME 180

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
           Y  GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K
Sbjct: 181 YSPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNK 239

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           +RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F
Sbjct: 240 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSF 299

Query: 340 PLNMNVL 346
            +N+  L
Sbjct: 300 GINLLAL 306


>gi|254417301|ref|ZP_05031045.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196175954|gb|EDX70974.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 748

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 192/695 (27%), Positives = 327/695 (47%), Gaps = 46/695 (6%)

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYN 159
           + Q F  RYPL++G GNFG++D D  AA RYTE R++ ++   +L  + E  VDF D ++
Sbjct: 1   MVQEFSTRYPLLAGHGNFGSVDNDPPAAMRYTETRLSPISHEALLSEIGEATVDFIDNFD 60

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
               EPVV P++ P LL NG SGIAVGMAT+IP HN+ EI +  +ALID P+++ EKL +
Sbjct: 61  GSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPHNLGEIVDGLIALIDRPDLADEKLWK 120

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC------IVVTEI 273
            I GPDFPTGG I+     I ++Y  GRG   VR    VEE+  G         ++VTE+
Sbjct: 121 LIPGPDFPTGGEII-DTSGIRDAYSSGRGIIPVRGIAKVEEIQVGRTRRHRRTALIVTEL 179

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+  IEKIA+L+   R+  + D+RDES      V+    R   P  +++ ++  +
Sbjct: 180 PYQVNKAAWIEKIADLVNHGRLDGIADLRDESDRRGMRVVVELKRDAHPRDVLKHLYKQT 239

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +++ F   M  L     P+ + L   L+E+L  R + L R+ ++ +    +R  +++GL
Sbjct: 240 PLQSNFGAIMLALV-NGQPRQLALRQCLEEFLRFREQTLTRQYTYELDQKRQRRHLVEGL 298

Query: 394 LIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
           L+    +  +I I+ N       K     + +L+E+Q DAIL + +R L  LE  ++++E
Sbjct: 299 LVCLNQLTRVIEILTNAPDGTTAKTQFQEQLNLSESQADAILAMPMRRLTGLERQKLQTE 358

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
            + L A  E +  LL+S  +    +  E+R +K  ++       R     +  +  K+  
Sbjct: 359 FEELTARIETLQELLSSRHELLKTLKKELRSLKRKYADPRRTKIRSAQSLKEPKQPKSEK 418

Query: 511 QQAMI----------------------EKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           Q                          E E   +  + +G ++ L+S     S    K+G
Sbjct: 419 QTRKKAKTSDTPKTSASKSPSPNLIETEAEQTVLEFTYQGHVQRLRSAPDPKSKPSIKDG 478

Query: 549 DSL-KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           +          T      L++ GKAY L   ++    G  + I +   L       T   
Sbjct: 479 NDFVIQTQQTTTASEFATLTSGGKAYPLKVQDIPPAAGRKQGIPVTRLLPDAAQSETVIA 538

Query: 608 YD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDH 660
           +        +  L++++ +G    +  +E++  T +G T +K+  E+ +  V    + D 
Sbjct: 539 HFRPHELTESVSLILLTQQGRVKRLPATELLNLTARGLTTVKLKEEDVLAYVTLAQSTDD 598

Query: 661 VAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           + +   N +LL F I+   +P M R  +G +    +      V C  I      +  + +
Sbjct: 599 LIIATSNGRLLRFEINDQNLPIMGRTAQGNQALRLR-RREQLVGCVAIAPNENLLLVSEQ 657

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +     +    KRG +G+   +    + + + 
Sbjct: 658 GYGKRIGLGVVRRIKRGDLGTQALQFKTSTDRLIG 692


>gi|284049791|emb|CBJ16554.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 303

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 153/301 (50%), Positives = 219/301 (72%), Gaps = 1/301 (0%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
           + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+EYI
Sbjct: 121 EREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYI 180

Query: 222 IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR 281
            GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+R
Sbjct: 181 PGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKAR 239

Query: 282 LIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           LIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F +
Sbjct: 240 LIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGI 299

Query: 342 N 342
           N
Sbjct: 300 N 300


>gi|302839180|ref|XP_002951147.1| hypothetical protein VOLCADRAFT_91671 [Volvox carteri f.
           nagariensis]
 gi|300263476|gb|EFJ47676.1| hypothetical protein VOLCADRAFT_91671 [Volvox carteri f.
           nagariensis]
          Length = 1159

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 210/824 (25%), Positives = 340/824 (41%), Gaps = 157/824 (19%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
             V   V+   L       YL+YA+S I  RAIPD+RDG KPVHRRI++AM E+GL    
Sbjct: 113 EPVTGRVEDTELYDEAYNSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYAMHELGLVHNK 172

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK AR+VGEV+GK HPHGD +VYDSLVR+AQPF  R  L+ G GNFG++D D AAA R
Sbjct: 173 PFKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQPFAMRQTLVDGHGNFGSLDNDPAAAMR 232

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+T+ A E +L  +  D VD++ T++E                        VG+A+
Sbjct: 233 YTECRLTRAAGEALLADIGPDTVDWQPTFDESQ----------------------VGLAS 270

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+  A  ALI +P ++ E+LL+++ GPDFPTGG +V   E +++ Y  GRG 
Sbjct: 271 NIPPHNLGEVVSALRALITDPRVTTEELLKHVRGPDFPTGGEVVVGPE-LLQVYETGRGS 329

Query: 250 FRVRARWCVEEVGRGSWC------------------------------------------ 267
             VR +  +E VG GS                                            
Sbjct: 330 VVVRGKATIERVGGGSGGGGGGDDGGGNDEVATAAGRTRRRRGAAAAAAAAQAVDEDIGG 389

Query: 268 ---------IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
                    +V+TE+PYQV KS L+  IAELI +K++    D+RDES      V+    +
Sbjct: 390 GRGGSGRELVVITELPYQVYKSDLVASIAELIESKQLEGASDVRDESDRTGVRVVVEVKK 449

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
                +++  ++  + ++  F  N   L   + P  M L  +L  +L  R +V+ RRSS 
Sbjct: 450 GYSGKVVLAQLYNSTRLQVNFHYNCTSLLNTK-PLQMGLKDMLLAFLDFRCDVVQRRSSA 508

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEI------IAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            ++A  +R+ +++G L        +      +    +    +  +V++  L+E Q +AIL
Sbjct: 509 SLRAAQQRLHLVEGFLRLLREEGRLDAVVADVRAAEDGGAARRALVAKHGLSEEQAEAIL 568

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L LR L  LE  ++  E   L     ++  +L +       +  E   +   F +    
Sbjct: 569 GLTLRRLTGLEAAKLDQERRELQQSIARLGDILANRTTLLAVVEQEAEALAAAFPEP--- 625

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT              ++++  +P  V+ S RG++R            ++   S + 
Sbjct: 626 --RRTALVAAEDVPATPSLESLVPPKPCLVLASRRGFLRRLAGDSLTAQNRNTRGKSGIR 683

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--NQDI 602
            + GD L   +     D +++++ DG+ +      +        +            + +
Sbjct: 684 LRSGDQLASLVAGSDRDLLMVVTPDGRMFKTRTAAVPPSSSSASSASPTAAAASGGTESV 743

Query: 603 VTAFVYDSTCK---------------------LLVVSSKGNAFIVEESEIIANTRKGKTF 641
                 +                         L++ +  G    +        ++KG   
Sbjct: 744 GRMKEVEDAGSEAKEEEEVEGEDVGGAVAGPCLVLCTRGGRIKRLALKN-RRESKKGIMV 802

Query: 642 LKVSS--------------------------------EEKMKLVVK--VTGDHVAVVGEN 667
           + + S                                EE++         GD V V    
Sbjct: 803 MGLESSSSKATGDGRDSSSSSSARDAASKKKGPDEAGEEELCWAALSRSPGDVVVVASAE 862

Query: 668 RKLLIFSIDQIPEMSR-GKG---VRLQSYKDGGISDVICFKICE 707
            ++L+F    +        G   +R+   +       I     E
Sbjct: 863 GQVLLFPATDVRVSGPQSAGTHAMRMSKRRPNDRIADITVLPAE 906



 Score = 45.1 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 36/128 (28%)

Query: 608  YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSS------------------- 646
              +   LL+V++ G    +   ++      + G   ++V+S                   
Sbjct: 979  GPAGPCLLLVTAHGIGKRIPLGQLRLGMRRQAGMVAIRVASAERARQRSRRSSSGGTAAQ 1038

Query: 647  -------------EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
                          + +  V+ V  G+ V +   N  ++  S+D I    R  +G  +  
Sbjct: 1039 WQQQEQQQQGAAGPDHVVAVLVVRDGEEVIMASRNGVVVRQSVDGIAVQGRMTRGTFVMQ 1098

Query: 692  YKDGGISD 699
               G    
Sbjct: 1099 LDGGDEVV 1106



 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 599  NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLV 653
               +V   V     ++++ S  G         I    R  +G   +++   +++  V
Sbjct: 1052 PDHVVAVLVVRDGEEVIMASRNGVVVRQSVDGIAVQGRMTRGTFVMQLDGGDEVVDV 1108


>gi|160933743|ref|ZP_02081131.1| hypothetical protein CLOLEP_02604 [Clostridium leptum DSM 753]
 gi|156867620|gb|EDO60992.1| hypothetical protein CLOLEP_02604 [Clostridium leptum DSM 753]
          Length = 759

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 192/694 (27%), Positives = 336/694 (48%), Gaps = 33/694 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V    +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M +MGL       KSA
Sbjct: 39  VVEQEIDHTLETNYMPYAMSVILSRALPEI-DGFKPSHRKLLYTMYKMGLLNSGR-TKSA 96

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFG---NIDGDSA-AAYRY 131
            IVG+ + KL+PHG+ ++YD++VRL++ +    +P +  +GNFG   +   D A AA RY
Sbjct: 97  NIVGQTM-KLNPHGEGAIYDTMVRLSRGYEALLHPFVDSKGNFGKFYSR--DMAWAASRY 153

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA++  +A+ + + +D+D VDF D Y+    EP + P+ FP +L N  +GIAVGMA+SI
Sbjct: 154 TEAKLDAIAQELFRDIDKDTVDFVDNYDNTMKEPSLLPATFPTVLVNANTGIAVGMASSI 213

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
              N++E+CE  + LI +P+     ++  ++ PDFP GG I+  R ++ + Y  GRGG +
Sbjct: 214 CPFNLKEVCETTIGLIRDPD---FDVMSTLLAPDFPGGGQIICDRNALKQVYATGRGGIK 270

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRAR+      + + CI VT IP       +IEKI EL+   ++  + DIRDE+  D   
Sbjct: 271 VRARYS---YDQSANCIDVTSIPPTTTCEAIIEKIIELVKQGKLKEIADIRDETGLDGLK 327

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     RS+DP+ LM  +F ++ +E  F  N NVL    VP+V+ +  +L EW+A R E 
Sbjct: 328 ITIDLKRSVDPEKLMLKLFRMTPLEDTFSCNFNVLI-AGVPRVLGIRELLGEWIAFRIEC 386

Query: 372 LFRRSSFR---MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           + RR+ F     +     ++ LK +L+       I+     E +  P ++  F + E Q 
Sbjct: 387 VRRRTYFDLQKKKDKLHLLKGLKRILLDIDKAVRIVRETEEESEVVPNLMIGFGIDEIQA 446

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +  ++LR L +    +   E + L  E  ++ ++++S  +    I  E+ +V + + +
Sbjct: 447 EFVAEIKLRHLNREYILKRTQETEQLETEIAELQAVMDSKSKVKGIIVSELNDVIKKYGR 506

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALHFKE 547
                  R +        +    +  I   P+T+  +  G+ + +   S+ +S     KE
Sbjct: 507 P------RKSMLVYPGEIQEYEPEDDIPDYPVTLFFTKEGYFKKITPQSLRMSGEQKLKE 560

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA--IQLLIDLNHNQDIVTA 605
            DS+   + A     +L  +   + Y   A      +       +   +  +  +  V  
Sbjct: 561 EDSIVQTVEATNNTELLFFTDRCQVYKTRASEFADTKASVLGDFVAAKLGFDEGESAVAM 620

Query: 606 FV-YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
            V  D    LL     G    V        T + +     S +  +  V  +  D   ++
Sbjct: 621 IVTTDYKGCLLFFFENGKLAKVPLDSYATKTNRKRLANAYSEKSPLCRVYHIQEDQEFLL 680

Query: 665 G-ENRKLLIFSIDQI--PEMSRGKGVRLQSYKDG 695
              + ++L+     +        +GV + + + G
Sbjct: 681 TSSSGRMLLVHTGAVAEKATRNTQGVAVMTQRKG 714


>gi|327335382|gb|AEA49886.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 304

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 151/305 (49%), Positives = 221/305 (72%), Gaps = 1/305 (0%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
           + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I
Sbjct: 121 EREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVI 180

Query: 222 IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR 281
            GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++
Sbjct: 181 PGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 239

Query: 282 LIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +
Sbjct: 240 LIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGI 299

Query: 342 NMNVL 346
           N+  L
Sbjct: 300 NLLAL 304


>gi|108796988|ref|YP_637185.1| DNA gyrase subunit A [Mycobacterium sp. MCS]
 gi|119866072|ref|YP_936024.1| DNA gyrase subunit A [Mycobacterium sp. KMS]
 gi|108767407|gb|ABG06129.1| DNA gyrase subunit A [Mycobacterium sp. MCS]
 gi|119692161|gb|ABL89234.1| DNA gyrase subunit A [Mycobacterium sp. KMS]
          Length = 1257

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 167/647 (25%), Positives = 303/647 (46%), Gaps = 36/647 (5%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 552  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 611

Query: 192  PSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN++E+ +A    ++N     E ++  ++E + GPDFPT G ++   + I ++Y+ GR
Sbjct: 612  PPHNLRELADAVYWCLENFEADEETTLAAVMERVKGPDFPTHG-LIVGSQGIEDTYKTGR 670

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SA 306
            G  ++R    +EE  RG   IV+TE+PYQV     I  IAE +   ++  + +I D+ S 
Sbjct: 671  GSVKMRGVVEIEEDSRGRTGIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSD 730

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                 ++    R     +++ +++  + ++T F  NM  +    VP+ + LD +++ ++ 
Sbjct: 731  RVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLRLDQMIRYYVE 789

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
            H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR        +  ++    +
Sbjct: 790  HQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIELLDI 849

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E++E+ 
Sbjct: 850  DEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIADLEDILAKPERQRAIVRDELKEIA 909

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
            + +        RRT       AD     + +I +E + V I+  G+ +          K 
Sbjct: 910  DKYGD-----DRRTRIV---PADGEVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKR 961

Query: 536  HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLL 593
                +     K+ D +       T D IL  +T G+ Y   A  L        G+ +  L
Sbjct: 962  GGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANL 1021

Query: 594  IDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            +    N+ I        Y+    L++ +  G       ++  +N   G   + +   +++
Sbjct: 1022 LAFQPNERIAQVIQIKSYEDAPYLVLATRNGLVKKSRLTDFDSNRSGGIVAVNLRDGDEL 1081

Query: 651  KLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
               V   + D + +V    + + FS     +  M R   GV+   +        +     
Sbjct: 1082 VGAVLCSSEDDLLLVSAKGQSIRFSATDEALRPMGRATSGVQGMRFNADDELLSLNVVRP 1141

Query: 707  EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    + +    Y +  +        RGG G L  +   R G  + +
Sbjct: 1142 D-TYLLVATSGGYAKRTSIEEYTAQGRGGKGILTIQYDRRRGNLVGA 1187



 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 58/128 (45%), Positives = 81/128 (63%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM +
Sbjct: 3   DTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFD 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G        KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   
Sbjct: 63  SGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGN 122

Query: 124 DSAAAYRY 131
           D  AA RY
Sbjct: 123 DPPAAMRY 130



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 6/161 (3%)

Query: 557  AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              + D +LL+S  G++    A +      G   +    +  N + ++++  V      LL
Sbjct: 1087 CSSEDDLLLVSAKGQSIRFSATDEALRPMGRATSGVQGMRFNADDELLSLNVVRPDTYLL 1146

Query: 616  VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLL 671
            V +S G A      E  A  R GK  L +  + +   +   + V  D  +  +     ++
Sbjct: 1147 VATSGGYAKRTSIEEYTAQGRGGKGILTIQYDRRRGNLVGALIVDDDTELYAITSGGGVI 1206

Query: 672  IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
              +  Q+ +  R  KGVRL +  +G     I      G + 
Sbjct: 1207 RTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEAGDST 1247



 Score = 44.8 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 2/131 (1%)

Query: 527  RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
               +R +   +  +  + F   D L           +L+ ++ G A         +    
Sbjct: 1109 DEALRPMGRATSGVQGMRFNADDELLSLNVVRPDTYLLVATSGGYAKRTSIEEYTAQGRG 1168

Query: 587  GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
            G+ I  +       ++V A + D   +L  ++S G        ++    R  KG   + +
Sbjct: 1169 GKGILTIQYDRRRGNLVGALIVDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNL 1228

Query: 645  SSEEKMKLVVK 655
               + +  + +
Sbjct: 1229 GEGDTLIAIAR 1239


>gi|28916622|gb|AAO59544.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 306

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 154/307 (50%), Positives = 220/307 (71%), Gaps = 1/307 (0%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+V
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
             + EPVV PS+FPNLL NG +GIAVGMAT+I  H + E+ E  LA  +NPEI+ ++L+E
Sbjct: 121 GAEREPVVMPSRFPNLLVNGAAGIAVGMATNILPHQLGEVIEGVLAESENPEITNQELME 180

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
           YI G DFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K
Sbjct: 181 YIPGRDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNK 239

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           +RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F
Sbjct: 240 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYF 299

Query: 340 PLNMNVL 346
            +N+  L
Sbjct: 300 GINLLAL 306


>gi|28916620|gb|AAO59543.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 150/307 (48%), Positives = 220/307 (71%), Gaps = 1/307 (0%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+V
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
             + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E
Sbjct: 121 GSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
            I GPDFPT G I+  R    ++Y+ GRG   +RA+  +E+   G   I+VTE+PYQV K
Sbjct: 181 VIPGPDFPTAGQIL-GRSGFRKAYKSGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 239

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           ++LIEKIA  +  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F
Sbjct: 240 AKLIEKIAVSVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSF 299

Query: 340 PLNMNVL 346
            +N+  L
Sbjct: 300 GINLLAL 306


>gi|167772152|ref|ZP_02444205.1| hypothetical protein ANACOL_03527 [Anaerotruncus colihominis DSM
           17241]
 gi|167665950|gb|EDS10080.1| hypothetical protein ANACOL_03527 [Anaerotruncus colihominis DSM
           17241]
          Length = 745

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 200/697 (28%), Positives = 345/697 (49%), Gaps = 31/697 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +    +   LEE Y+ YA+S I  RAIP++ DGFKP HR++++ M +MGL  GA   KSA
Sbjct: 26  LIEQPIVSTLEENYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMGLLTGAR-TKSA 83

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFG---NIDGDSAAAYRYT 132
            +VG  + KL+PHGDQ++Y++LVRL++      +P +  +GNFG   + D  + AA RYT
Sbjct: 84  NVVGATM-KLNPHGDQAIYETLVRLSRGCEALLHPYVDSKGNFGKAYSRDM-AYAASRYT 141

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++  +A  + + +DED VD  D Y+    EP +FP  FP++L N   GIAVGMA+SI 
Sbjct: 142 EVKLDPIANELFRDIDEDTVDMVDNYDNTMKEPTLFPVTFPSVLVNSNIGIAVGMASSIC 201

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
             N+ E+CE  +A++ NPE  + +    +  PDFP GG IV   +++   Y  GRGG RV
Sbjct: 202 PFNLAEVCETTIAVLKNPEHDLLET---LHAPDFPGGGYIVYDEQALRRIYDTGRGGIRV 258

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+      R + CI VTEIP       +++K+ +L+ A +I  + D+RDE+  +   +
Sbjct: 259 RARYT---YDRANNCIDVTEIPPTATVEAIMDKVVDLVKAGKIREIADMRDETDLNGLKL 315

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
            F   R +DPD LM+ +F L+ +E  F  N NVL  G +P+V  +  +++EW A R E +
Sbjct: 316 TFDLKRGVDPDRLMQRLFKLTPLEDSFSCNFNVLI-GGMPRVCGVRTLIEEWAAFRSECV 374

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDE---IIAIIRNEDKPKPVMVSRFSLTENQVD 429
            RR   ++     ++ +L+GL    L+ID+   I+   + E +  P ++  F + E Q +
Sbjct: 375 RRRVFRQLNKKKEKLHLLEGLSRILLDIDKAVRIVRETQEEREVVPNLMIGFGIDEVQAE 434

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +  +RLR L +    +   E+  L  +  +++S+L   ++    I  E+  V + ++K 
Sbjct: 435 YVAEIRLRQLNREHILKRTEEIGQLRDDIAEMESILEHREKIRAIIISELENVGKKYAKP 494

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALHFKEG 548
                 R +        +    +       + +  +  G+ + +   S+ +S     KEG
Sbjct: 495 ------RRSLLYYPTEGEDEAGEEPAPDYAVHLFFTREGYFKKITPQSLRMSGEHKLKEG 548

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV- 607
           D++  A+ A     +L  +  G+ Y   A +    +       +   L  ++     ++ 
Sbjct: 549 DTVTQAVEATNNSDLLFFTDRGQVYKAKASDFDDTKASVMGDYIPARLGMDEGESAVYMA 608

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
              D    +L V   G A  V+ +     T + K     S+   +  + ++  D    + 
Sbjct: 609 VTADYAGYMLFVFQNGKAAKVDLAGYATKTNRKKLVGAYSTASPLAGIFQLAQDAEYLLT 668

Query: 665 GENRKLLIFSID--QIPEMSRGKGVRLQSYKDGGISD 699
               ++LI       +      +GV + + K     +
Sbjct: 669 SSAGRMLIVHTGAVAVKTTRSTQGVAVMTLKKNNFVE 705


>gi|254820902|ref|ZP_05225903.1| DNA gyrase, A subunit [Mycobacterium intracellulare ATCC 13950]
          Length = 1258

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 171/647 (26%), Positives = 304/647 (46%), Gaps = 36/647 (5%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 192  PSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN++E+ EA          + E ++  + E + GPDFPT G ++   + I ++Y  GR
Sbjct: 611  PPHNLRELAEAVYWCLDNHEADEEATLTAVCERVKGPDFPTHG-LIVGSQGIHDAYTTGR 669

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SA 306
            G  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+ S 
Sbjct: 670  GSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSD 729

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                 ++    R     +++ +++  + ++T F  NM  +    VP+ + LD +++ ++A
Sbjct: 730  RVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLRLDQMIRHYVA 788

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
            H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     +  ++    +
Sbjct: 789  HQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDI 848

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+ E+ 
Sbjct: 849  DEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRRIVHDELSEIV 908

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
            +          RRT       AD     + +I +E + V I+  G+ +          K 
Sbjct: 909  DKHGDE-----RRTRII---AADGDVNDEDLIAREDVVVTITETGYAKRTKTDLYRSQKR 960

Query: 536  HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLL 593
                +     K+ D ++      T D IL  +T G+ Y   A  L        G+ +  L
Sbjct: 961  GGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANL 1020

Query: 594  IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            +     + I        Y+    L++ +  G     + ++  +N   G   + +   +++
Sbjct: 1021 LAFQPEERIAQVIQIRGYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDEL 1080

Query: 651  KLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
               V  + D  + +V  N + + FS     +  M R   GV+   +        +   + 
Sbjct: 1081 VGAVLCSSDEDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDYLLSLNV-VR 1139

Query: 707  EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 1140 EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 1186



 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 58/128 (45%), Positives = 82/128 (64%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM +
Sbjct: 3   DTTLPPGDDSVDRIQPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYD 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   
Sbjct: 63  SGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGN 122

Query: 124 DSAAAYRY 131
           D  AA RY
Sbjct: 123 DPPAAMRY 130



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 75/200 (37%), Gaps = 12/200 (6%)

Query: 515  IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
             E  P  V+ +  G ++  K    D +        + ++ D L  A+   + + +LL+S 
Sbjct: 1038 YEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSSDEDLLLVSA 1097

Query: 569  DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            +G++    A +      G   +    +  N +  +++  V      LLV +S G A    
Sbjct: 1098 NGQSIRFSATDEALRPMGRATSGVQGMRFNADDYLLSLNVVREGTYLLVATSGGYAKRTA 1157

Query: 628  ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
              E     R GK  L V       ++   + V  D  +  +     ++  +  Q+ +  R
Sbjct: 1158 IEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGR 1217

Query: 684  -GKGVRLQSYKDGGISDVIC 702
              KGVRL +  +      I 
Sbjct: 1218 QTKGVRLMNLGEENTLLAIA 1237



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 2/131 (1%)

Query: 527  RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
               +R +   +  +  + F   D L           +L+ ++ G A              
Sbjct: 1108 DEALRPMGRATSGVQGMRFNADDYLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRG 1167

Query: 587  GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
            G+ +  ++       +V A + D   +L  ++S G        ++    R  KG   + +
Sbjct: 1168 GKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNL 1227

Query: 645  SSEEKMKLVVK 655
              E  +  + +
Sbjct: 1228 GEENTLLAIAR 1238


>gi|46019128|emb|CAE52028.1| gyrase subunit A [Bacillus subtilis]
 gi|46019130|emb|CAE52029.1| gyrase subunit A [Bacillus subtilis]
          Length = 293

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 148/294 (50%), Positives = 213/294 (72%), Gaps = 1/294 (0%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV 
Sbjct: 181 EVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  
Sbjct: 240 KAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQ 293


>gi|315930381|gb|EFV09458.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 305]
          Length = 303

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 150/298 (50%), Positives = 215/298 (72%), Gaps = 2/298 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           A+  + E       IV+ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES ++   
Sbjct: 247 AKTHI-EKKTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIR 303


>gi|37624524|gb|AAQ96058.1| DNA gyrase subunit A [Serratia plymuthica]
 gi|37624526|gb|AAQ96059.1| DNA gyrase subunit A [Serratia plymuthica]
 gi|37624528|gb|AAQ96060.1| DNA gyrase subunit A [Serratia plymuthica]
          Length = 240

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 133/238 (55%), Positives = 174/238 (73%), Gaps = 1/238 (0%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSAR+VG+
Sbjct: 1   IEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSARVVGD 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A 
Sbjct: 61  VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMSKIAH 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+  
Sbjct: 121 ELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLAEVVN 180

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             LA ID+  ISIE L+E+I GPDFPT   I+  R  I E+YR GRG   +RAR  VE
Sbjct: 181 GCLAYIDDENISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYLRARAEVE 237


>gi|327335380|gb|AEA49885.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 303

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 150/304 (49%), Positives = 220/304 (72%), Gaps = 1/304 (0%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+A
Sbjct: 1   LPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  +
Sbjct: 61  QDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSE 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I 
Sbjct: 121 REPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIP 180

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
           GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++L
Sbjct: 181 GPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKL 239

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           IEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N
Sbjct: 240 IEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIN 299

Query: 343 MNVL 346
           +  L
Sbjct: 300 LLAL 303


>gi|46019112|emb|CAE52020.1| gyrase subunit A [Bacillus subtilis]
          Length = 293

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 148/294 (50%), Positives = 214/294 (72%), Gaps = 1/294 (0%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+V
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
             + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E
Sbjct: 121 GSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
            I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K
Sbjct: 181 VIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 239

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           ++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  +
Sbjct: 240 AKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 293


>gi|163803901|ref|ZP_02197741.1| DNA topoisomerase IV subunit A [Vibrio sp. AND4]
 gi|159172300|gb|EDP57188.1| DNA topoisomerase IV subunit A [Vibrio sp. AND4]
          Length = 332

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 145/336 (43%), Positives = 226/336 (67%), Gaps = 8/336 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  +++++ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEIISPQADIEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE-----GSDIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRV 332


>gi|225353986|gb|ACN88536.1| DNA gyrase subunit A [Arcobacter marinus]
          Length = 470

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 195/480 (40%), Positives = 303/480 (63%), Gaps = 14/480 (2%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           +I++AM ++ +   + +KKSARIVG+VIGK HPHGD SVYD+LVRLAQ F  R PL+ GQ
Sbjct: 1   KILYAMHDLNMTARSPYKKSARIVGDVIGKYHPHGDSSVYDALVRLAQNFSMRAPLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           GNFG++DGD+AAA RYTEARMT+++E IL+ +D+D V+F   Y++   EP V P++ P L
Sbjct: 61  GNFGSVDGDNAAAMRYTEARMTKISEEILKDLDKDTVNFVQNYDDTLKEPAVLPTRVPTL 120

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           L NG+ GIAVGMAT IP HN++E+ EA L  IDN E + E L+++I GPDFPTGG I   
Sbjct: 121 LLNGSEGIAVGMATKIPPHNLKELLEAVLYTIDNQEATAEDLMQFIQGPDFPTGGTIF-G 179

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I+++Y+ GRG  ++RA+  + E       IV+ E+PYQV KSRLIE+IA L   K +
Sbjct: 180 RRGIIDAYKTGRGRVKIRAKHHI-ETKGKKEVIVLDELPYQVNKSRLIEQIAILAKEKNV 238

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + ++RDES  +   V+    +    ++++ +++  + MET F + + +    + P+V 
Sbjct: 239 EGISEVRDESDREGIRVVIELKKDAMSEIVLNNLYKSTPMETTFGI-ILLAVHNKEPKVF 297

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---K 412
            L  +L+ +L+HR+ V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR+      
Sbjct: 298 NLPELLRLFLSHRKTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDAD 357

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            K  +  RF L+  Q  AIL++RL  L  L+  +++++  ++L    +++++L S ++  
Sbjct: 358 AKEKLQERFELSLIQSQAILDMRLGRLTGLQRDKLEADYQDILRLIHELEAILKSEEKLN 417

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             I  EI+E+KE +S      RRR    E+  +      + +I  EP+ V I+  G+++ 
Sbjct: 418 EIIKEEIQEIKEKYSDE----RRR----EIEDSYDEIDIEDLIPNEPMAVNITRNGYVKR 469


>gi|218672669|ref|ZP_03522338.1| DNA topoisomerase IV subunit A [Rhizobium etli GR56]
          Length = 303

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 209/290 (72%), Positives = 257/290 (88%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+K A+IVGE
Sbjct: 1   LKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFRKCAKIVGE 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE++MT V+E
Sbjct: 61  VMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTESKMTAVSE 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L+G+D+DAVDFRDTY+E +SEPVV P  FPNLLANG+SGIAVGMATSIPSHN  E+C+
Sbjct: 121 LLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPSHNAHELCD 180

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVRA+W  E++
Sbjct: 181 AALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVRAKWQTEDL 240

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+R 
Sbjct: 241 GRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRC 290


>gi|296167138|ref|ZP_06849545.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mycobacterium
            parascrofulaceum ATCC BAA-614]
 gi|295897460|gb|EFG77059.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mycobacterium
            parascrofulaceum ATCC BAA-614]
          Length = 1259

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 172/647 (26%), Positives = 305/647 (47%), Gaps = 36/647 (5%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 192  PSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN++E+ EA          + E ++  + E + GPDFPT G ++   + I ++Y  GR
Sbjct: 611  PPHNLRELAEAVYWCLDNHEADEEATLAAVCERVKGPDFPTHG-LIVGSQGIHDAYTTGR 669

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SA 306
            G  R+R    +EE  RG   IV+TE+PYQV     I  IAE +   R+  + +I D+ S 
Sbjct: 670  GSIRMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGRLTGIANIEDQSSD 729

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                 ++    R     +++ +++  + ++T F  NM  +    VP+ + LD +++ ++A
Sbjct: 730  RVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLRLDQMIRHYVA 788

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
            H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR  +     +  ++    +
Sbjct: 789  HQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDI 848

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+ E+ 
Sbjct: 849  DEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELTEIV 908

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
            +          RRT       AD     + +I +E + V I+  G+ +          K 
Sbjct: 909  DKHGD-----DRRTRIV---AADGDVNDEDLIAREDVVVTITETGYAKRTKTDLYRSQKR 960

Query: 536  HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLL 593
                +     K+ D ++    + T D IL  +T G+ Y   A  L        G+ +  L
Sbjct: 961  GGKGVQGAGLKQDDIVRHFFVSSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANL 1020

Query: 594  IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            +     + I        Y+    L++ +  G     + ++  +N   G   + +   +++
Sbjct: 1021 LAFQPEERIAQVIQIRGYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDEL 1080

Query: 651  KLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
               V   + + + +V  N + + FS     +  M R   GV+   +        +   + 
Sbjct: 1081 VGAVLCSSEEDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNTDDYLLSLNV-VR 1139

Query: 707  EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            EG   + +    Y +        +  RGG G L      R GK + +
Sbjct: 1140 EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMFDRRRGKLVGA 1186



 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 60/140 (42%), Positives = 89/140 (63%), Gaps = 9/140 (6%)

Query: 6   ISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++         + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM
Sbjct: 1   MTDTTLPPGGEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+ 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 122 DGDSAAAYRY--TE---ARM 136
             D  AA RY  TE    R+
Sbjct: 121 GNDPPAAMRYCLTEDALVRL 140



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 76/216 (35%), Gaps = 12/216 (5%)

Query: 515  IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
             E  P  V+ +  G ++  K    D +        + ++ D L  A+   + + +LL+S 
Sbjct: 1038 YEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSSEEDLLLVSA 1097

Query: 569  DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            +G++    A +      G   +    +  N +  +++  V      LLV +S G A    
Sbjct: 1098 NGQSIRFSATDEALRPMGRATSGVQGMRFNTDDYLLSLNVVREGTYLLVATSGGYAKRTA 1157

Query: 628  ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
              E     R GK  L V       K+   + V  D  +  +     ++     Q+ +  R
Sbjct: 1158 IEEYPVQGRGGKGVLTVMFDRRRGKLVGALIVDDDSELYAITSGGGVIRTDARQVRKAGR 1217

Query: 684  -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
              KGVRL +  +      I     E    +      
Sbjct: 1218 QTKGVRLMNLGEDNTLLAIARNAEENADEVVEEAEG 1253


>gi|325678874|ref|ZP_08158472.1| DNA gyrase/topoisomerase IV, A subunit [Ruminococcus albus 8]
 gi|324109378|gb|EGC03596.1| DNA gyrase/topoisomerase IV, A subunit [Ruminococcus albus 8]
          Length = 747

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 192/711 (27%), Positives = 337/711 (47%), Gaps = 33/711 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V    +   LE+ Y+ YA+S I  RA P++ DGFKP HR++++ M  MGL  G    K A
Sbjct: 27  VAEQKITQTLEKNYMPYAMSVIVSRAFPEI-DGFKPSHRKLLYTMYLMGLIKGK-LTKCA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAAAYRYT 132
            IVG  + KL+PHGD ++Y++LVRL++      +P +  +GNFG   + D  + AA RYT
Sbjct: 85  NIVGATM-KLNPHGDGAIYETLVRLSRGNEALLHPYVQSKGNFGKSYSRDM-AYAASRYT 142

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++  + E + + +D++ VDF   Y+   +EP +FP+ FP +L N   GI V MA+++ 
Sbjct: 143 EAKLEPICEELFRDIDKETVDFVPNYDNTMTEPTLFPATFPTILVNANVGIGVSMASAVC 202

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
             N+ E+CE A+AL+ +P+ +       + GPDFP GG ++     + + YR GRG  ++
Sbjct: 203 PFNLTEVCETAIALMKDPDANALDT---LKGPDFPGGGYLLYDEAELDKIYRTGRGSVKL 259

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA++          CI VTEIP       +IEKI  L+ A +I  +  IRDE+  D   +
Sbjct: 260 RAKYR---YNSDERCIEVTEIPATTTIEAIIEKIIALVKAGKIKEISYIRDETDLDGLQI 316

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + +DP+ LM+ ++ L+ ++  +  N N+L     P+VM +  IL EW   R + +
Sbjct: 317 GIDIKKGVDPEKLMQKLYKLTPLQDTYSCNFNILVH-GYPKVMGVYEILDEWTKFRLDCV 375

Query: 373 FRRSSFRMQAIDRRVE---ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
            RR ++ ++    R+     L  +L+      +II     E +  P ++  F + E Q +
Sbjct: 376 KRRVNYDLKKKRDRLHLLKGLGKILLDIDKAIKIIRETEEESEVVPNLMIGFGIDEVQAE 435

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +  ++LR L +    +  ++ + L  E  +++ +L S K+    I  E+ +V + + + 
Sbjct: 436 YVAEIKLRHLNREYILKRTADTERLEKEIAELEEILGSEKKLKQVIISELNDVIKNYGQE 495

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-SALHFKEG 548
                 R T        +   ++  IE  P  + IS  G+ +     S+ + S    KEG
Sbjct: 496 ------RKTQFFYQSDIEEVEEEEEIEDYPCKLFISESGYFKKCTMQSLRMASDQKLKEG 549

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA--IQLLIDLNHNQDIVTAF 606
           D +   + +     +L  S     Y   A    + +       I  ++  +  +      
Sbjct: 550 DRMMAEIESSNRAELLFFSDKAAVYKAKASRFGNTKASDLGDYIPAVLGFDSGEGFSAMV 609

Query: 607 -VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
              D +  LL V   G A  V  +     T + K       +  +  ++K+  +  V + 
Sbjct: 610 ETMDYSGYLLFVYDNGKAAKVPLNAYETKTNRKKLSNAYCEKAGLVTILKLNDNAQVMLR 669

Query: 665 GENRKLLIFSID-QIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGLTW 711
             N + L+F     +P+ +R  +GV++ +   K+  I         E  T 
Sbjct: 670 TTNGRALLFDTALLLPKTTRNTQGVQVMTLKAKNAKIEKAYIVSDEEAETL 720


>gi|28916590|gb|AAO59528.1| gyrase A [Bacillus subtilis]
          Length = 310

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 150/311 (48%), Positives = 221/311 (71%), Gaps = 1/311 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+P++RDG KP HRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPEVRDGLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DS+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA M++++  IL+ + +D +D++
Sbjct: 61  DSMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAGMSKISMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIA GMA +IP H + EI +  LA+ +NP+I+I+
Sbjct: 121 DXYDGSEREPVVMPSRFPNLLGNGAAGIAEGMAPNIPPHQLGEIIDGVLAVSENPDITIQ 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PY
Sbjct: 181 ELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + +
Sbjct: 240 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTAL 299

Query: 336 ETRFPLNMNVL 346
           +T F +N+  L
Sbjct: 300 QTSFGINLLAL 310


>gi|28916598|gb|AAO59532.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 305

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 155/306 (50%), Positives = 221/306 (72%), Gaps = 1/306 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             Q F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+ 
Sbjct: 61  RGQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+EY
Sbjct: 121 AEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEY 180

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+
Sbjct: 181 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKA 239

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F 
Sbjct: 240 RLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFG 299

Query: 341 LNMNVL 346
           +N+  L
Sbjct: 300 INLLAL 305


>gi|145633277|ref|ZP_01789008.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
 gi|144986123|gb|EDJ92713.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
          Length = 267

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 129/265 (48%), Positives = 183/265 (69%), Gaps = 4/265 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT   ++  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVV 270
           GRG   VRAR  VE   +G+  +  
Sbjct: 237 GRGKVYVRARATVETNEKGASKLSC 261


>gi|37624494|gb|AAQ96043.1| DNA gyrase subunit A [Hafnia alvei]
 gi|37624496|gb|AAQ96044.1| DNA gyrase subunit A [Hafnia alvei]
 gi|37624498|gb|AAQ96045.1| DNA gyrase subunit A [Hafnia alvei]
          Length = 246

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/239 (54%), Positives = 175/239 (73%), Gaps = 1/239 (0%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSARIVG
Sbjct: 1   NIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARIVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HELLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLNEVI 180

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
              LA ID+  I++E L+++I GPDFPT   I+  R  I E+YR GRG   +RA+  VE
Sbjct: 181 NGCLAYIDDENITVEGLMQHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRAKAEVE 238


>gi|313115470|ref|ZP_07800935.1| DNA gyrase/topoisomerase IV, A subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622180|gb|EFQ05670.1| DNA gyrase/topoisomerase IV, A subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 749

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 195/714 (27%), Positives = 337/714 (47%), Gaps = 32/714 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   +V    +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M EMGL  GA 
Sbjct: 24  LNAGSVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGAR 82

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAA 127
             KSA IVG  +  L+PHGD ++YD++VR+ +       P +  +GNFG   + D  S A
Sbjct: 83  -TKSANIVGSTM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDM-SCA 139

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++  V E + + +D++ VDF   Y+   +EP + P  FP +LAN T GIAVGM
Sbjct: 140 AARYTEAKLEGVCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGM 199

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           A +I S N+ E+C   +AL+   +     +   +  PDF  GG I+     + E Y  GR
Sbjct: 200 ACNICSFNLAELCATTVALM---KDEHHDISTTMPAPDFVGGGQILYDEAQMREIYENGR 256

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  +VRAR+ V     G   I VT+IP       +++KIAEL+ A ++  + D+RDE+  
Sbjct: 257 GSVKVRARYSVV---PGENMIEVTQIPPTTTVEAIMDKIAELVKAGKVKEISDMRDETDL 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   +     R +D D LM  +F  + +E  F  N N+L     P+VM +  ILKEW A 
Sbjct: 314 NGLKLTLDLKRGVDADKLMAKLFKATPLEDSFSANFNILVS-GQPRVMGVREILKEWTAF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKG---LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           R E + RR+ + +   ++R+ +LKG   +L+      +II     E +  P ++  F + 
Sbjct: 373 RVECVRRRTYYDLHGKEKRLHLLKGLAAILLDIDKAIKIIRTTEEETEVVPNLMIGFGID 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q D +  ++LR L +    +  SE++ L  +   ++ +L    +    I  E+ +V +
Sbjct: 433 EVQADYVAEIKLRHLNREYILKRTSEIEQLEKDIADLNDILAKPARIRRIIINELNDVAK 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSAL 543
            + +      RR+        D+   ++      P+TV  +  G+ + +    +    A 
Sbjct: 493 KYGQP-----RRSEILYDLPEDENGSEEEEAPDYPVTVFFTREGYFKKIPPQGLRTAGAH 547

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQD 601
             KEGD +   +        L  +   + Y +    L  G+     I +   + ++  ++
Sbjct: 548 KLKEGDEIVQQIETRNNVEALFFTDKQQVYKVRLAELEDGKVAQMGIFIPGRLGMDEGEN 607

Query: 602 IVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
           +++  +  D +  +L   + G    +  S       + K       +E +  +  +  + 
Sbjct: 608 VLSMVITSDYSGFMLFFFASGKCAKIPLSSYATKQNRRKLLKAYCDKEPLAKLFFLPEET 667

Query: 660 HVAVVGENRKLLIFSIDQI--PEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
            +A+     ++L+    QI        +GV + + K      +      + L  
Sbjct: 668 ELAIRTSASRMLLVGTAQIAAKATRDSQGVAVVTLKKNQT--IASVVPADTLEL 719


>gi|295104659|emb|CBL02203.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Faecalibacterium prausnitzii SL3/3]
          Length = 749

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 196/714 (27%), Positives = 331/714 (46%), Gaps = 32/714 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   +V    +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M EMGL  GA 
Sbjct: 24  LNAGSVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGAR 82

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAA 127
             KSA IVG  +  L+PHGD ++YD++VR+ +       P +  +GNFG   + D  S A
Sbjct: 83  -TKSANIVGSTM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDM-SCA 139

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++  V E + + +D++ VDF   Y+   +EP + P  FP +LAN T GIAVGM
Sbjct: 140 AARYTEAKLESVCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGM 199

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           A +I S N+ E+C   +AL+   +     +   +  PDF  GG IV     + E Y  GR
Sbjct: 200 ACNICSFNLAELCATTVALM---KDEHHDIGTTMPAPDFVGGGQIVYDEAQMREIYENGR 256

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  +VRAR+       G   I VT+IP       +++KIAEL+   ++  + D+RDE+  
Sbjct: 257 GSVKVRARYNAV---PGENMIEVTQIPPTTTVEAIMDKIAELVKTGKVKEISDMRDETDL 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   +     R +D D LM  +F  + +E  F  N N+L     P+VM +  ILKEW A 
Sbjct: 314 NGLKLTLDLKRGVDADKLMAKLFKATPLEDSFSCNFNILVS-GQPRVMGVREILKEWTAF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKG---LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           R E + RR+ + +   ++R+ +L+G   +L+       II     E +  P ++  F + 
Sbjct: 373 RVECVRRRTYYDLHGKEKRLHLLQGLAAILLDIDKAIRIIRTTEEETEVVPNLMIGFGID 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q D +  ++LR L +    +   E++ L  +   ++ +L    +    I  E+ +V +
Sbjct: 433 EVQADYVAEIKLRHLNREYILKRTGEIEQLEKDIADLNDVLAKPARIRRIIINELNDVAK 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSAL 543
            + K      R +        + A  ++  +   P+TV  +  G+ + +   S+    A 
Sbjct: 493 KYGKP-----RCSEILYDLPEEDAAAEEEAVPDYPVTVFFTREGYFKKIPPQSLRTAGAH 547

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ--- 600
             KEGD +   L        L  +   + Y +    L  G+     I +   L  ++   
Sbjct: 548 KLKEGDEIIQQLETRNNVEALFFTDKQQVYKVRLAELEDGKVAQMGIFIPGRLGMDEGEN 607

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
            +      D +  +L   + G    +  S       + K     S +E + +++    + 
Sbjct: 608 VLSMVITGDYSGFMLFFFASGKCAKIPLSSYATKQNRRKLLKAYSDKEPLAMMLYQPEET 667

Query: 660 HVAVVGENRKLLIFSIDQI--PEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
            +A+     ++L+    QI        +GV + + K      +      + L  
Sbjct: 668 ELAIRTSASRMLLVGTAQIAAKTTRDSQGVAVVTLKKNQT--IASVVPADTLEL 719


>gi|160943135|ref|ZP_02090372.1| hypothetical protein FAEPRAM212_00615 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445604|gb|EDP22607.1| hypothetical protein FAEPRAM212_00615 [Faecalibacterium prausnitzii
           M21/2]
          Length = 749

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 196/714 (27%), Positives = 331/714 (46%), Gaps = 32/714 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   +V    +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M EMGL  GA 
Sbjct: 24  LNAGSVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGAR 82

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAA 127
             KSA IVG  +  L+PHGD ++YD++VR+ +       P +  +GNFG   + D  S A
Sbjct: 83  -TKSANIVGSTM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDM-SCA 139

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++  V E + + +D++ VDF   Y+   +EP + P  FP +LAN T GIAVGM
Sbjct: 140 AARYTEAKLESVCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGM 199

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           A +I S N+ E+C   +AL+   +     +   +  PDF  GG IV     + E Y  GR
Sbjct: 200 ACNICSFNLAELCATTVALM---KDEHHDIGTTMPAPDFVGGGQIVYDEAQMREIYENGR 256

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  +VRAR+       G   I VT+IP       +++KIAEL+   ++  + D+RDE+  
Sbjct: 257 GSVKVRARYNAV---PGENMIEVTQIPPTTTVEAIMDKIAELVKTGKVKEISDMRDETDL 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   +     R +D D LM  +F  + +E  F  N N+L     P+VM +  ILKEW A 
Sbjct: 314 NGLKLTLDLKRGVDADKLMAKLFKATPLEDSFSCNFNILVS-GQPRVMGVREILKEWTAF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKG---LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           R E + RR+ + +   ++R+ +L+G   +L+       II     E +  P ++  F + 
Sbjct: 373 RIECVRRRTYYDLHGKEKRLHLLQGLAAILLDIDKAIRIIRTTEEETEVVPNLMIGFGID 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q D +  ++LR L +    +   E++ L  +   ++ +L    +    I  E+ +V +
Sbjct: 433 EVQADYVAEIKLRHLNREYILKRTGEIEQLEKDIADLNDVLAKPARIRRIIINELNDVAK 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSAL 543
            + K      R +        + A  ++  +   P+TV  +  G+ + +   S+    A 
Sbjct: 493 KYGKP-----RCSEILYDLPEEDAAAEEEAVPDYPVTVFFTREGYFKKIPPQSLRTAGAH 547

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ--- 600
             KEGD +   L        L  +   + Y +    L  G+     I +   L  ++   
Sbjct: 548 KLKEGDEIIQQLETRNNVEALFFTDKQQVYKVRLAELEDGKVAQMGIFIPGRLGMDEGEN 607

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
            +      D +  +L   + G    +  S       + K     S +E + +++    + 
Sbjct: 608 VLSMVITGDYSGFMLFFFASGKCAKIPLSSYATKQNRRKLLKAYSDKEPLAMMLYQPEET 667

Query: 660 HVAVVGENRKLLIFSIDQI--PEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
            +A+     ++L+    QI        +GV + + K      +      + L  
Sbjct: 668 ELAIRTSASRMLLVGTAQIAAKTTRDSQGVAVVTLKKNQT--IASVVPADTLEL 719


>gi|295102725|emb|CBL00270.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Faecalibacterium prausnitzii L2-6]
          Length = 749

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 193/714 (27%), Positives = 338/714 (47%), Gaps = 32/714 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   +V    +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M EMGL  GA 
Sbjct: 24  LNAGSVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLIKGAR 82

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAA 127
             KSA IVG  +  L+PHGD ++YD++VR+ +       P +  +GNFG   + D  S A
Sbjct: 83  -TKSANIVGSTM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDM-SCA 139

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++  V E + + +D++ VDF   Y+   +EP + P  FP +LAN T GIAVGM
Sbjct: 140 AARYTEAKLEGVCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGM 199

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           A +I S N+ E+C   +AL+   + +   +   +  PDF  GG I+     + + +  GR
Sbjct: 200 ACNICSFNLAELCNTTIALM---KDAKHDISTTMPAPDFVGGGQILYDEAQMRDIFENGR 256

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  +VRAR+       G   I +T+IP       +++KIAEL+ A +I  + D+RDE+  
Sbjct: 257 GSVKVRARYAAV---PGENMIEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDL 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   +     R +D D LM  +F  + +E  F  N N+L     P+VM +  IL+EW A 
Sbjct: 314 NGLKLTLDLKRGVDADKLMAKLFKATPLEDSFSCNFNILVS-GQPRVMGVREILQEWTAF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKG---LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           R E + RR+ + +   ++R+ +LKG   +L+       II     E +  P ++  F + 
Sbjct: 373 RMECVRRRTYYDLHGKEKRLHLLKGLAAILMDIDKAIHIIRTTEEETEVVPNLMIGFGID 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q D +  ++LR L +    +   E++ L A+   ++ +L    +    I  E+ +V +
Sbjct: 433 EVQADYVAEIKLRHLNREYILKRTGEIEQLEADIADLNDILAKPARIRKIIMKELADVAK 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSAL 543
            + +      RR+        ++   ++  +   P+TV  +  G+++ +   S+    A 
Sbjct: 493 KYGQP-----RRSEILYDLPEEEGGAEEEAVPDYPVTVFFTREGYLKKIPPQSLRTAGAH 547

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQD 601
             KEGD +   +        L  +   + Y +    L  G+     I L   + ++  ++
Sbjct: 548 KLKEGDEIVRQVETRNNVEALFFTDKQQVYKVRLAELEDGKVAQMGIYLPGRLGMDEGEN 607

Query: 602 IVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
           I+   +  D +  +L   + G    +  S       + K       +E +  +  +  + 
Sbjct: 608 ILDMVITSDYSGYMLFFFAGGRCAKIPLSSYATKQNRRKLLKAYCDKEPLATLFFLPEET 667

Query: 660 HVAVVGENRKLLIFSIDQI--PEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
            +A+     ++L+    QI        +GV + + K      +      + L  
Sbjct: 668 ELAIRTSAGRMLLVGTAQIAAKTTRDSQGVAVVTLKKNQT--IASVVPADTLEL 719


>gi|28916616|gb|AAO59541.1| gyrase A [Bacillus subtilis]
          Length = 306

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 149/307 (48%), Positives = 221/307 (71%), Gaps = 1/307 (0%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            RA+P++RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+V
Sbjct: 1   SRALPEVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++DTY+
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDTYD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
             + +PVV PS+FPNLL NG +GIA GMA +IP H + EI +  LA+ +NP+I+I +L+E
Sbjct: 121 GSERDPVVMPSRFPNLLGNGAAGIAEGMAPNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
            I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K
Sbjct: 181 VIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 239

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           ++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F
Sbjct: 240 AKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQTSF 299

Query: 340 PLNMNVL 346
            +N+  L
Sbjct: 300 GINLLAL 306


>gi|317133208|ref|YP_004092522.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
 gi|315471187|gb|ADU27791.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
          Length = 744

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 190/696 (27%), Positives = 329/696 (47%), Gaps = 29/696 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V +  +   L   Y+ YA+S I  RAIP++ DGFKP HR+I++ M +MGL  GA   KS
Sbjct: 24  KVLSEPITHTLTANYMPYAMSVIISRAIPEI-DGFKPSHRKILYTMYKMGLLSGAR-TKS 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAAAYRY 131
           A +VG+ + +L+PHGD ++Y+++VRL++      +  +  +GNFG   + D  + AA RY
Sbjct: 82  ANVVGQTM-RLNPHGDMAIYETMVRLSRGNEALLHAYVDSKGNFGKAYSRDM-AFAASRY 139

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++  +   + + +D+  VDF D Y+    EPV+ P+ FP++L N   GIAVGMA+SI
Sbjct: 140 TEVKLDPICNELFRDIDKKTVDFVDNYDSTMQEPVLLPAAFPSILINSNIGIAVGMASSI 199

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
              N+ E+CE  + L+ +P      LL  +  PDFP GG+++   +++   Y  GRG  R
Sbjct: 200 CPFNLTEVCETTIRLMKDP---AADLLPLLKAPDFPGGGLVLYDADTLRSVYETGRGSLR 256

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRAR+   ++ +    I +TEIP       ++++I EL+   ++  + DIRDE+      
Sbjct: 257 VRARY---QLDKAGRFIEITEIPPTTTVEAIMDRIVELVKTGKVREIADIRDETDLSGLK 313

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R  D D LM  +F L+ +E  F  N NVL  G  PQV+ + G+L+ W A R + 
Sbjct: 314 LTIDLKRGADGDKLMSRLFRLTPLEDTFGCNFNVLV-GGRPQVLGVRGLLRAWTAFRMDC 372

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDE---IIAIIRNEDKPKPVMVSRFSLTENQV 428
           + RR  F +     R+ +L+GL    L+ID+   I+     E +  P ++  F + E Q 
Sbjct: 373 VRRRLRFDLGRAKDRLHLLRGLEKILLDIDKAVRIVRETDEESEVVPNLMIGFGIDEVQA 432

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +  ++LR   +    +   E++ L  E   +++ L    +    IA E+R + + + +
Sbjct: 433 EFVAEIKLRHFNRAYILEKTQEIEQLEREIADLEATLGEDARMLRLIADELRAIVKKYGR 492

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+      + + A  ++ +        +     + +              KE 
Sbjct: 493 P-----RRSLILYDVKEETAPDEEEIPAYPVTLFLTREGYFKKITPQSLRMSGEQKLKES 547

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+L   + +     +L  +   + Y         G+       L   L  ++      + 
Sbjct: 548 DALVQTVESTNGCELLFFTDRCQVYKSSVSEFEDGKASVLGDYLPARLGFDEGEALRRMV 607

Query: 609 DSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
            +      LL + + G A  VE +     TR+ K     S +E +  +  +T D  V + 
Sbjct: 608 VAKQYDGWLLFIYANGKAAKVELASYKTKTRRRKLVNAYSDKESLVAMFHLTEDREVVLT 667

Query: 665 GENRKLLIFSIDQIPEMS--RGKGVRLQSYKDGGIS 698
               K+L+     +P  +    +GV   + K G   
Sbjct: 668 SSAGKMLLLDTGAVPVKTTHTTQGVTAMTLKPGQAV 703


>gi|145221415|ref|YP_001132093.1| DNA gyrase, A subunit [Mycobacterium gilvum PYR-GCK]
 gi|315441703|ref|YP_004074582.1| DNA gyrase subunit A [Mycobacterium sp. Spyr1]
 gi|145213901|gb|ABP43305.1| DNA gyrase subunit A [Mycobacterium gilvum PYR-GCK]
 gi|315260006|gb|ADT96747.1| DNA gyrase subunit A [Mycobacterium sp. Spyr1]
          Length = 1261

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 167/647 (25%), Positives = 300/647 (46%), Gaps = 36/647 (5%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT++
Sbjct: 552  TEARLTPLAMEMLREIDEETVDFVPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNM 611

Query: 192  PSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN++E+ EA          + E +++ + E + GPDFPT G ++   + I ++Y+ GR
Sbjct: 612  PPHNLRELAEAVYWCLDNHEADEEATLDAVCERVKGPDFPTYG-LIVGSQGIDDTYKTGR 670

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SA 306
            G  R+R    +EE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+ S 
Sbjct: 671  GSIRMRGVVEIEEDARGRTSLVITELPYQVNHDNFITSIAEQVRDGKLTGISNIEDQSSD 730

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                 ++    R     +++ +++  + ++T F  NM  +    VP+ + LD +++ ++ 
Sbjct: 731  RVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLRLDQLIRHYVN 789

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSL 423
            H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     +           +
Sbjct: 790  HQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVEIARSGLIELLDI 849

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E++E+ 
Sbjct: 850  DEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIADLEDILAKPERQRAIVHDELKEIV 909

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
            + +        RRT       AD     + +I +E + V I+  G+ +          K 
Sbjct: 910  DKYGD-----DRRTRII---PADGDVADEDLIAREEVVVTITETGYAKRTKSDLYRSQKR 961

Query: 536  HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLL 593
                +     K+ D +       T D IL  +T G+ Y   A +L        G+ +  L
Sbjct: 962  GGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYDLPEASRTARGQHVANL 1021

Query: 594  IDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            +     + I        Y+    L++ +  G        +  +N   G   + +   +++
Sbjct: 1022 LAFQPEERIAQVIQLKTYEDAPYLVLATRNGLVKKSRLVDFDSNRSGGIVAVNLRDGDEL 1081

Query: 651  KLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
               V  +  D + +V    + + FS     +  M R   GV+   + +      +   + 
Sbjct: 1082 VGAVLCSADDDLLLVSAKGQSIRFSATDEALRPMGRATSGVQGMRFNEEDQLLSLNV-VR 1140

Query: 707  EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            EG   + +    Y +           RGG G L  +   R G  + +
Sbjct: 1141 EGTYLLVATSGGYAKRTAIEEYSAQGRGGKGILTIQYDRRRGTLVGA 1187



 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 58/128 (45%), Positives = 81/128 (63%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM +
Sbjct: 3   DTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFD 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G        KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   
Sbjct: 63  SGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGN 122

Query: 124 DSAAAYRY 131
           D  AA RY
Sbjct: 123 DPPAAMRY 130



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 6/161 (3%)

Query: 557  AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                D +LL+S  G++    A +      G   +    +  N    +++  V      LL
Sbjct: 1087 CSADDDLLLVSAKGQSIRFSATDEALRPMGRATSGVQGMRFNEEDQLLSLNVVREGTYLL 1146

Query: 616  VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLL 671
            V +S G A      E  A  R GK  L +  + +   +   + V  D  +  +     ++
Sbjct: 1147 VATSGGYAKRTAIEEYSAQGRGGKGILTIQYDRRRGTLVGALIVDDDTELYAITSGGGVI 1206

Query: 672  IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
              +  Q+ +  R  KGVRL +  +G     I      G + 
Sbjct: 1207 RTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEAGDST 1247



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 2/131 (1%)

Query: 527  RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
               +R +   +  +  + F E D L           +L+ ++ G A         +    
Sbjct: 1109 DEALRPMGRATSGVQGMRFNEEDQLLSLNVVREGTYLLVATSGGYAKRTAIEEYSAQGRG 1168

Query: 587  GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
            G+ I  +        +V A + D   +L  ++S G        ++    R  KG   + +
Sbjct: 1169 GKGILTIQYDRRRGTLVGALIVDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNL 1228

Query: 645  SSEEKMKLVVK 655
               + +  + +
Sbjct: 1229 GEGDTLIAIAR 1239


>gi|240172097|ref|ZP_04750756.1| DNA gyrase subunit A [Mycobacterium kansasii ATCC 12478]
          Length = 1257

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/647 (26%), Positives = 303/647 (46%), Gaps = 36/647 (5%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 550  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 609

Query: 192  PSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN++E+ +A          + E ++  ++E + GPDFPT G ++   + I ++Y+ GR
Sbjct: 610  PPHNLRELADAVFWALDNYDADEETTLAAVMERVKGPDFPTAG-LIVGSQGIADAYKTGR 668

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SA 306
            G  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+ S 
Sbjct: 669  GSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGIANIEDQGSE 728

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                 ++    R     +++ +++  + ++T F  NM  +    VP+ + LD +++ ++ 
Sbjct: 729  RVGVRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLRLDQMIRYYVE 787

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
            H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR  +     +  ++    +
Sbjct: 788  HQLDVIIRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDI 847

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+ E+ 
Sbjct: 848  DEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIADLEDILAKPERQRGIVRDELGEIV 907

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
            +          RRT       AD     + +I +E + V I+  G+ +          K 
Sbjct: 908  DKHGD-----DRRTRIV---AADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKR 959

Query: 536  HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLL 593
                +     K+ D +       T D IL  +T G+ Y   A  L        G+ +  L
Sbjct: 960  GGKGVQGAGLKQDDIVAHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANL 1019

Query: 594  IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            +     + I        Y+    L++ +  G     + ++  +N   G   + +   +++
Sbjct: 1020 LAFQPEERIAQVIQIRGYEDAPYLVLATKNGLVKKSKLTDFDSNRSGGIVAINLRDNDEL 1079

Query: 651  KLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
               V  +  D + +V  N + + FS     +  M R   GV+   +        +   + 
Sbjct: 1080 VGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNV-VR 1138

Query: 707  EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 1139 EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 1185



 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 58/129 (44%), Positives = 86/129 (66%), Gaps = 3/129 (2%)

Query: 6   ISNSNTLVE---ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++++    +   E ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 1   MTDTTLPPDNSAERIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMY 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 61  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRY 131
            D  AA RY
Sbjct: 121 NDPPAAMRY 129



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 14/221 (6%)

Query: 515  IEKEPITVVISNRGWIRSLKSHSVDLSAL------HFKEGDSLKIALHAHTTDRILLLST 568
             E  P  V+ +  G ++  K    D +        + ++ D L  A+     D +LL+S 
Sbjct: 1037 YEDAPYLVLATKNGLVKKSKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSA 1096

Query: 569  DGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            +G++    A +      G   +    +  N +  +++  V      LLV +S G A    
Sbjct: 1097 NGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNVVREGTYLLVATSGGYAKRTA 1156

Query: 628  ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
              E     R GK  L V       ++   +    D  +  +     ++  +  Q+ +  R
Sbjct: 1157 IEEYPVQGRGGKGVLTVMYDRRRGRLVGALIADDDSELYAITSGGGVIRTAARQVRKAGR 1216

Query: 684  -GKGVRLQSYKDGGISDVICFKICEGLTWIDSA--GRSYNR 721
              KGVRL +  +G     I     E    I     G    +
Sbjct: 1217 QTKGVRLMNLGEGDTLLAIARNAEESEEAIGETDDGNGSGK 1257


>gi|120401035|ref|YP_950864.1| DNA gyrase subunit A [Mycobacterium vanbaalenii PYR-1]
 gi|119953853|gb|ABM10858.1| DNA gyrase subunit A [Mycobacterium vanbaalenii PYR-1]
          Length = 1262

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/647 (25%), Positives = 301/647 (46%), Gaps = 36/647 (5%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT++
Sbjct: 552  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNM 611

Query: 192  PSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN++E+ EA    ++N     E ++E + E + GPDFPT G ++   + I ++Y  GR
Sbjct: 612  PPHNLRELAEAVYWCLENYEADEEATLEAVCERVKGPDFPTHG-LIVGSQGISDTYTTGR 670

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SA 306
            G  R+R    +EE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+ S 
Sbjct: 671  GSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSD 730

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                 ++    R     +++ +++  + ++T F  NM  +    VP+ + LD +++ ++ 
Sbjct: 731  RVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLRLDQLIRLYVN 789

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSL 423
            H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     +           +
Sbjct: 790  HQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVEIARSGLIELLDI 849

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E++E+ 
Sbjct: 850  DEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRAIVHDELKELV 909

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
            + +        RRT       AD     + +I +E + V I+  G+ +          K 
Sbjct: 910  DKYGD-----DRRTRII---PADGDVADEDLIAREEVVVTITETGYAKRTKSDLYRSQKR 961

Query: 536  HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLL 593
                +     K+ D +       T D IL  +T G+ Y   A +L        G+ +  L
Sbjct: 962  GGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYDLPEASRTARGQHVANL 1021

Query: 594  IDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            +     + I        Y+    L++ +  G        +  +N   G   + +   +++
Sbjct: 1022 LAFQPEERIAQVIQLKSYEDAPYLVLATRNGLVKKSRLVDFDSNRSGGIVAVNLRDGDEL 1081

Query: 651  KLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
               V  +  D + +V    + + FS     +  M R   GV+   + +      +   + 
Sbjct: 1082 VGAVLCSAEDDLLLVSAKGQSIRFSATDEALRPMGRATSGVQGMRFNEEDQLLSLNV-VR 1140

Query: 707  EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            E    + +    Y +           RGG G L  +   R G  + +
Sbjct: 1141 EDTYLLVATSGGYAKRTAIEEYSAQGRGGKGILTIQYDRRRGTLVGA 1187



 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 57/130 (43%), Positives = 84/130 (64%), Gaps = 4/130 (3%)

Query: 6   ISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           ++++         + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM
Sbjct: 1   MTDTTLPPGGEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G        KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+ 
Sbjct: 61  FDSGFRPDRGHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 122 DGDSAAAYRY 131
             D  AA RY
Sbjct: 121 GNDPPAAMRY 130



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 6/161 (3%)

Query: 557  AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                D +LL+S  G++    A +      G   +    +  N    +++  V      LL
Sbjct: 1087 CSAEDDLLLVSAKGQSIRFSATDEALRPMGRATSGVQGMRFNEEDQLLSLNVVREDTYLL 1146

Query: 616  VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLL 671
            V +S G A      E  A  R GK  L +  + +   +   + V  D  +  +     ++
Sbjct: 1147 VATSGGYAKRTAIEEYSAQGRGGKGILTIQYDRRRGTLVGALIVDDDTELYAITSGGGVI 1206

Query: 672  IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
              +  Q+ +  R  KGVRL +  +G     I      G + 
Sbjct: 1207 RTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEAGDST 1247



 Score = 44.4 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 2/131 (1%)

Query: 527  RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
               +R +   +  +  + F E D L           +L+ ++ G A         +    
Sbjct: 1109 DEALRPMGRATSGVQGMRFNEEDQLLSLNVVREDTYLLVATSGGYAKRTAIEEYSAQGRG 1168

Query: 587  GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
            G+ I  +        +V A + D   +L  ++S G        ++    R  KG   + +
Sbjct: 1169 GKGILTIQYDRRRGTLVGALIVDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNL 1228

Query: 645  SSEEKMKLVVK 655
               + +  + +
Sbjct: 1229 GEGDTLIAIAR 1239


>gi|269467763|gb|EEZ79527.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [uncultured SUP05 cluster bacterium]
          Length = 275

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 144/280 (51%), Positives = 200/280 (71%), Gaps = 5/280 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +  +++  + E N   V++   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MSDN--TDNPEVFEPNFPIVTIEDEMRDSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  +G D+  ++KKSARIVG+VIGK HPHGD +VYD++VR+AQPF  R  LI GQGNFG+
Sbjct: 59  MEVLGNDYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTE RM +++  +L+ +++D VDF D Y+  +SEP V P++ PNLL NG+
Sbjct: 119 VDGDSAAAMRYTEIRMAKISHELLRDLEKDTVDFIDNYDGSESEPSVLPTRVPNLLVNGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+  A L +IDN E+SI++LL+ I GPDFPT G I+   + I 
Sbjct: 179 SGIAVGMATNIPPHNIDEVINACLLVIDNDEVSIDELLDIIHGPDFPTAG-IINGADGIR 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           ++Y  G+G   +R+R  V   G     IVVTE+PYQV K+
Sbjct: 238 QAYETGKGKIYLRSRSHV--EGEDKQSIVVTELPYQVNKA 275


>gi|146217173|gb|ABQ10651.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 149/308 (48%), Positives = 219/308 (71%), Gaps = 2/308 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F
Sbjct: 1   VRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EP
Sbjct: 61  NYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
           VV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPD
Sbjct: 121 VVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK 285
           FPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEK
Sbjct: 181 FPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEK 239

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
           IA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  
Sbjct: 240 IADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLA 299

Query: 346 LSMGRVPQ 353
           L     P+
Sbjct: 300 LVD-GQPK 306


>gi|317057035|ref|YP_004105502.1| DNA topoisomerase [Ruminococcus albus 7]
 gi|315449304|gb|ADU22868.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
          Length = 745

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 198/711 (27%), Positives = 338/711 (47%), Gaps = 33/711 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V    +   LE+ Y+ YA+S I  RA P++ DGFKP HR++++ M  MGL  G    K A
Sbjct: 26  VAEEKITQTLEKNYMPYAMSVIVSRAFPEI-DGFKPSHRKLLYTMYLMGLIKGK-LTKCA 83

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NIDGDSAAAYRYT 132
            IVG  + KL+PHGD ++Y++LVRL++      +P +  +GNFG   + D  + AA RYT
Sbjct: 84  NIVGATM-KLNPHGDGAIYETLVRLSRGNEALLHPYVQSKGNFGKSYSRDM-AYAASRYT 141

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++  + E + + +D++ VDF   Y+   +EP +FP+ FP +L N   GI V MA+S+ 
Sbjct: 142 EAKLEPICEELFRDIDKETVDFVPNYDNTMTEPTLFPATFPTILVNANVGIGVSMASSVC 201

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
             N+ E+CE A+ALI N + +       + GPDFP GG ++     + + YR GRG  ++
Sbjct: 202 PFNLAEVCETAIALIKNKDANALDT---LKGPDFPGGGYLLYDEAELEKIYRTGRGSVKL 258

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA++   +  R   CI +TEIP       +IEKI  L+ A +I  +  IRDE+  D   +
Sbjct: 259 RAKYRFNKEER---CIEITEIPATTTIEAIIEKIIALVKAGKIKEISYIRDETDLDGLQI 315

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + +DPD LM+ ++ L+ ++  +  N N+L     P+VM +  IL EW   R + +
Sbjct: 316 GIDIKKGVDPDKLMQKLYKLTPLQDTYSCNFNILVH-GYPKVMGVYEILDEWTRFRVDCV 374

Query: 373 FRRSSFR---MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
            RR  +     +     ++ L  +L+       II     E +  P ++  F + E Q D
Sbjct: 375 RRRVEYDLKKKKDKLHLLKGLGKILLDIDKAIRIIRETEEESEVIPNLMIGFGIDEIQAD 434

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +  ++LR L +    +  SE + L  E  +++ +L S K+  + I  E+++V + + + 
Sbjct: 435 YVAEIKLRHLNREYILKRTSETEKLEKEIAELEDVLGSEKKIKDIIIRELKDVIKNYGQE 494

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-SALHFKEG 548
                 R T        +   ++  IE  P  + IS  G+ +     S+ + S    KEG
Sbjct: 495 ------RKTQFFYQSDIEEVEEEEEIEDYPCKLFISESGYFKKCTMQSLRMASDQKLKEG 548

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA--IQLLIDLNHNQDIVTAF 606
           D +     +     +L  S     Y   A    + +       I  ++  ++ +   T  
Sbjct: 549 DRMMSETESSNRAELLFFSDKASVYKSKASRFGNTKASDLGDYIPAVLGFDNGEAFHTMV 608

Query: 607 -VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
              D +  LL V   G A  V        T + K     S +  +  ++K+T +  V + 
Sbjct: 609 ETMDYSGCLLFVFENGKAAKVPLDSYATKTNRKKLANAYSDKSPLVAILKLTDNAQVMLR 668

Query: 665 GENRKLLIFSID-QIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGLTW 711
             N + L+F     +P+ +R  +GV++ +   K+  +         E    
Sbjct: 669 TTNGRALLFDTALLLPKTTRNTQGVQVMTLKAKNAKVEKAYIVSDEEAENL 719


>gi|325068644|ref|ZP_08127317.1| DNA topoisomerase IV subunit A [Actinomyces oris K20]
          Length = 373

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 151/376 (40%), Positives = 221/376 (58%), Gaps = 4/376 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     + +    +  +  + L   +   +L YA S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MPKSATTRTPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  MGL       KS+R+VG+V+G+LHPHGD ++Y++LVRLAQPF  R PLI G GNFG+
Sbjct: 61  MDRMGLRPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +   +DED VDF   Y+   +EP V P+ FPNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALALTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT++P HN+ E+  AA  L+ +PE ++E+L+ ++ GPD P GG+IV   + I 
Sbjct: 180 AGIAVGMATNMPPHNLVEVVAAARHLLTHPEATLEELMAFVPGPDLPAGGMIV-GLDGIR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG F  RA   VE V      IVVTE+PY V   ++I +I E + +K++  + D
Sbjct: 239 EAYRTGRGKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKVIARIKEAVGSKKLQGITD 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +       ++       +P+ ++  ++  + +E  F +N   L     P  + L  
Sbjct: 299 VADLTDRKHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVD-GQPHTLGLRE 357

Query: 360 ILKEWLAHRREVLFRR 375
           +L+ ++ HR  V+ RR
Sbjct: 358 LLEVFVRHRLTVVTRR 373


>gi|28916596|gb|AAO59531.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 150/309 (48%), Positives = 217/309 (70%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+ D  KP HRRI++AM+++G+     +KKSARIVGEVIG  HPHGD +VYDS
Sbjct: 1   IVSRALPDVPDDLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGNYHPHGDSAVYDS 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSA A RYTEARM++++  IL+ + +D +D++D 
Sbjct: 61  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAVAMRYTEARMSKISMEILRDITKDTIDYQDN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H V EI +  LA+ +NP+I I +L
Sbjct: 121 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQVGEIIDGVLAVSENPDIPIPEL 180

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV
Sbjct: 181 MEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 239

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T
Sbjct: 240 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 299

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 300 SFGINLLAL 308


>gi|225353988|gb|ACN88537.1| DNA gyrase subunit A [Arcobacter halophilus]
          Length = 456

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 190/466 (40%), Positives = 293/466 (62%), Gaps = 14/466 (3%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           + +KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA 
Sbjct: 1   SPYKKSARIVGDVIGKYHPHGDSSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDNAAAM 60

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT+V+E IL+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMAT
Sbjct: 61  RYTEARMTKVSEEILRDIDKDTVNFVQNYDDTLKEPAVLPTRVPTLLLNGSEGIAVGMAT 120

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN++E+ +A L ++DN   + E L+++I GPDFPTGG I   R  I+++Y+ GRG 
Sbjct: 121 KIPPHNLKELLDAVLYMVDNKGATAEDLMQFIQGPDFPTGGTIF-GRRGIIDAYKTGRGR 179

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++RA+  + E       IV+ E+PYQV KSRLIE+IA L   K++  + ++RDES  + 
Sbjct: 180 VKIRAKHHI-ETKGKKEVIVLDELPYQVNKSRLIEQIATLAKDKQVEGISEVRDESDREG 238

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +    ++++ +++  + +ET F + + +    + P+V  L  +L  +L+HR+
Sbjct: 239 IRVVIELKKDAMSEIVLNNLYKSTPLETTFGI-ILLAVHNKEPKVFNLPELLNLFLSHRK 297

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR+     + K  +  RF L+  
Sbjct: 298 TVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVQIIRSSANDAEAKEKLQDRFGLSII 357

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  L+  ++++E   LLA   +++S+L S  +    I  E+ E+KE +
Sbjct: 358 QSQAILDMRLGRLTGLQRDKLEAEYQELLALIAELESILKSEDKLNEIIKEEVAEIKEKY 417

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
           S       RRT   +   +      + +I  EP+ V I++ G+++ 
Sbjct: 418 SDE-----RRTEIED---SYDEIDIEDLIPNEPMVVTITHNGYVKR 455


>gi|221229349|ref|YP_002502765.1| putative DNA gyrase subunit A [Mycobacterium leprae Br4923]
 gi|219932456|emb|CAR70099.1| putative DNA gyrase subunit A [Mycobacterium leprae Br4923]
          Length = 1249

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 161/639 (25%), Positives = 286/639 (44%), Gaps = 20/639 (3%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP+V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 192  PSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN+ E+ +A          + E  +  ++E + GPDFPT G ++   + I ++Y+ GR
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAG-LIVGSQGIADAYKTGR 669

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SA 306
            G  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   R+  + ++ D+ S 
Sbjct: 670  GSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                 ++    R     +++ +++  + ++T F  NM  +    VP+ + LD ++  ++ 
Sbjct: 730  RVGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLRLDQMICYYVE 788

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SL 423
            H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+I +IR         V       +
Sbjct: 789  HQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLDI 848

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             + Q  AIL+++LR L  LE  +I  +L  +  E   +  +L   +++   I  E+ E+ 
Sbjct: 849  DDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGIIRNELTEIA 908

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
            E +                     A  +  +   E      +     RS K     +   
Sbjct: 909  EKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITETGYAKRTKTDLYRSQKRGGKGVQGA 968

Query: 544  HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQD 601
              K+ D ++      T D IL  +T G+ Y   A  L        G+ +  L+     + 
Sbjct: 969  GLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQPEER 1028

Query: 602  IVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            I        Y+    L++ +  G     + ++  +N   G   + +   +++   V    
Sbjct: 1029 IAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDELVGAVLCAA 1088

Query: 659  D-HVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            D  + +V  N + + FS     +  M R   GV+   +        +   + E    + +
Sbjct: 1089 DGDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNV-VREDTYLLVA 1147

Query: 715  AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                Y +  +     +  RGG G L      R G  + +
Sbjct: 1148 TSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGA 1186



 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 58/130 (44%), Positives = 84/130 (64%), Gaps = 4/130 (3%)

Query: 6   ISNSNTLVEE----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++      +     V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+ 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 122 DGDSAAAYRY 131
             D  AA RY
Sbjct: 121 GNDPPAAMRY 130



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 6/160 (3%)

Query: 557  AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  +LL+S +G++    A +      G   +    +  N +  +++  V      LL
Sbjct: 1086 CAADGDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNVVREDTYLL 1145

Query: 616  VVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLL 671
            V +S G A      E     R GK  L V        +   + V  D  +  +     ++
Sbjct: 1146 VATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGAIVVDEDSELYAITSGGGVI 1205

Query: 672  IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
              +  Q+ +  R  KGVRL +  +G     I     E   
Sbjct: 1206 RTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESAD 1245



 Score = 44.4 bits (103), Expect = 0.082,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 42/131 (32%), Gaps = 2/131 (1%)

Query: 527  RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
               +R +   +  +  + F   D L           +L+ ++ G A              
Sbjct: 1108 DEALRPMGRATSGVQGMRFNADDRLLSLNVVREDTYLLVATSGGYAKRTSIEEYPMQGRG 1167

Query: 587  GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKV 644
            G+ +  ++       +V A V D   +L  ++S G        ++       KG   + +
Sbjct: 1168 GKGVLTVMYDRRRGSLVGAIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNL 1227

Query: 645  SSEEKMKLVVK 655
               + +  + +
Sbjct: 1228 GEGDTLLAIAR 1238


>gi|15826871|ref|NP_301134.1| DNA gyrase subunit A [Mycobacterium leprae TN]
 gi|13092418|emb|CAC29514.1| putative DNA gyrase subunit A [Mycobacterium leprae]
          Length = 1249

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 161/639 (25%), Positives = 286/639 (44%), Gaps = 20/639 (3%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP+V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 192  PSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN+ E+ +A          + E  +  ++E + GPDFPT G ++   + I ++Y+ GR
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAG-LIVGSQGIADAYKTGR 669

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SA 306
            G  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   R+  + ++ D+ S 
Sbjct: 670  GSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                 ++    R     +++ +++  + ++T F  NM  +    VP+ + LD ++  ++ 
Sbjct: 730  RVGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLRLDQMICYYVE 788

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SL 423
            H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+I +IR         V       +
Sbjct: 789  HQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLDI 848

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             + Q  AIL+++LR L  LE  +I  +L  +  E   +  +L   +++   I  E+ E+ 
Sbjct: 849  DDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGIIRNELTEIA 908

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
            E +                     A  +  +   E      +     RS K     +   
Sbjct: 909  EKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITETGYAKRTKTDLYRSQKRGGKGVQGA 968

Query: 544  HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQD 601
              K+ D ++      T D IL  +T G+ Y   A  L        G+ +  L+     + 
Sbjct: 969  GLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQPEER 1028

Query: 602  IVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            I        Y+    L++ +  G     + ++  +N   G   + +   +++   V    
Sbjct: 1029 IAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDELVGAVLCAA 1088

Query: 659  D-HVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            D  + +V  N + + FS     +  M R   GV+   +        +   + E    + +
Sbjct: 1089 DGDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNV-VREDTYLLVA 1147

Query: 715  AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                Y +  +     +  RGG G L      R G  + +
Sbjct: 1148 TSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGA 1186



 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 58/130 (44%), Positives = 84/130 (64%), Gaps = 4/130 (3%)

Query: 6   ISNSNTLVEE----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++      +     V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+ 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 122 DGDSAAAYRY 131
             D  AA RY
Sbjct: 121 GNDPPAAMRY 130



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 6/160 (3%)

Query: 557  AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  +LL+S +G++    A +      G   +    +  N +  +++  V      LL
Sbjct: 1086 CAADGDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNVVREDTYLL 1145

Query: 616  VVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLL 671
            V +S G A      E     R GK  L V        +   + V  D  +  +     ++
Sbjct: 1146 VATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGAIVVDEDSELYAITSGGGVI 1205

Query: 672  IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
              +  Q+ +  R  KGVRL +  +G     I     E   
Sbjct: 1206 RTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESAD 1245



 Score = 44.4 bits (103), Expect = 0.082,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 42/131 (32%), Gaps = 2/131 (1%)

Query: 527  RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
               +R +   +  +  + F   D L           +L+ ++ G A              
Sbjct: 1108 DEALRPMGRATSGVQGMRFNADDRLLSLNVVREDTYLLVATSGGYAKRTSIEEYPMQGRG 1167

Query: 587  GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKV 644
            G+ +  ++       +V A V D   +L  ++S G        ++       KG   + +
Sbjct: 1168 GKGVLTVMYDRRRGSLVGAIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNL 1227

Query: 645  SSEEKMKLVVK 655
               + +  + +
Sbjct: 1228 GEGDTLLAIAR 1238


>gi|1122296|emb|CAA92430.1| DNA gyrase A subunit [Mycobacterium leprae]
 gi|1262357|emb|CAA94713.1| DNA gyrase A, and intein [Mycobacterium leprae]
          Length = 1273

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/639 (25%), Positives = 286/639 (44%), Gaps = 20/639 (3%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP+V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 192  PSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN+ E+ +A          + E  +  ++E + GPDFPT G ++   + I ++Y+ GR
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAG-LIVGSQGIADAYKTGR 669

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SA 306
            G  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   R+  + ++ D+ S 
Sbjct: 670  GSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                 ++    R     +++ +++  + ++T F  NM  +    VP+ + LD ++  ++ 
Sbjct: 730  RVGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLRLDQMICYYVE 788

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SL 423
            H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+I +IR         V       +
Sbjct: 789  HQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLDI 848

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             + Q  AIL+++LR L  LE  +I  +L  +  E   +  +L   +++   I  E+ E+ 
Sbjct: 849  DDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGIIRNELTEIA 908

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
            E +                     A  +  +   E      +     RS K     +   
Sbjct: 909  EKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITETGYAKRTKTDLYRSQKRGGKGVQGA 968

Query: 544  HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQD 601
              K+ D ++      T D IL  +T G+ Y   A  L        G+ +  L+     + 
Sbjct: 969  GLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQPEER 1028

Query: 602  IVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            I        Y+    L++ +  G     + ++  +N   G   + +   +++   V    
Sbjct: 1029 IAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDELVGAVLCAA 1088

Query: 659  D-HVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            D  + +V  N + + FS     +  M R   GV+   +        +   + E    + +
Sbjct: 1089 DGDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNV-VREDTYLLVA 1147

Query: 715  AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                Y +  +     +  RGG G L      R G  + +
Sbjct: 1148 TSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGA 1186



 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 58/130 (44%), Positives = 84/130 (64%), Gaps = 4/130 (3%)

Query: 6   ISNSNTLVEE----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++      +     V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+ 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 122 DGDSAAAYRY 131
             D  AA RY
Sbjct: 121 GNDPPAAMRY 130



 Score = 84.1 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 557  AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  +LL+S +G++    A +      G   +    +  N +  +++  V      LL
Sbjct: 1086 CAADGDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNVVREDTYLL 1145

Query: 616  VVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLL 671
            V +S G A      E     R GK  L V        +   + V  D  +  +     ++
Sbjct: 1146 VATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGAIVVDEDSELYAITSGGGVI 1205

Query: 672  IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
              +  Q+ +  R  KGVRL +  +G     I     E    +  
Sbjct: 1206 RTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESADGVSV 1249



 Score = 44.4 bits (103), Expect = 0.084,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 42/131 (32%), Gaps = 2/131 (1%)

Query: 527  RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
               +R +   +  +  + F   D L           +L+ ++ G A              
Sbjct: 1108 DEALRPMGRATSGVQGMRFNADDRLLSLNVVREDTYLLVATSGGYAKRTSIEEYPMQGRG 1167

Query: 587  GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKV 644
            G+ +  ++       +V A V D   +L  ++S G        ++       KG   + +
Sbjct: 1168 GKGVLTVMYDRRRGSLVGAIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNL 1227

Query: 645  SSEEKMKLVVK 655
               + +  + +
Sbjct: 1228 GEGDTLLAIAR 1238


>gi|13638291|sp|Q57532|GYRA_MYCLE RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mle gyrA
            intein
          Length = 1273

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/639 (25%), Positives = 286/639 (44%), Gaps = 20/639 (3%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP+V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 192  PSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN+ E+ +A          + E  +  ++E + GPDFPT G ++   + I ++Y+ GR
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAG-LIVGSQGIADAYKTGR 669

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SA 306
            G  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   R+  + ++ D+ S 
Sbjct: 670  GSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                 ++    R     +++ +++  + ++T F  NM  +    VP+ + LD ++  ++ 
Sbjct: 730  RVGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVD-GVPRTLRLDQMICYYVE 788

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SL 423
            H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+I +IR         V       +
Sbjct: 789  HQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLDI 848

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             + Q  AIL+++LR L  LE  +I  +L  +  E   +  +L   +++   I  E+ E+ 
Sbjct: 849  DDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGIIRNELTEIA 908

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
            E +                     A  +  +   E      +     RS K     +   
Sbjct: 909  EKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITETGYAKRTKTDLYRSQKRGGKGVQGA 968

Query: 544  HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQD 601
              K+ D ++      T D IL  +T G+ Y   A  L        G+ +  L+     + 
Sbjct: 969  GLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQPEER 1028

Query: 602  IVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            I        Y+    L++ +  G     + ++  +N   G   + +   +++   V    
Sbjct: 1029 IAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDELVGAVLCAA 1088

Query: 659  D-HVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            D  + +V  N + + FS     +  M R   GV+   +        +   + E    + +
Sbjct: 1089 DGDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNV-VREDTYLLVA 1147

Query: 715  AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                Y +  +     +  RGG G L      R G  + +
Sbjct: 1148 TSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGA 1186



 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 58/130 (44%), Positives = 84/130 (64%), Gaps = 4/130 (3%)

Query: 6   ISNSNTLVEE----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++      +     V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+ 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 122 DGDSAAAYRY 131
             D  AA RY
Sbjct: 121 GNDPPAAMRY 130



 Score = 84.1 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 557  AHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  +LL+S +G++    A +      G   +    +  N +  +++  V      LL
Sbjct: 1086 CAADGDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNVVREDTYLL 1145

Query: 616  VVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLL 671
            V +S G A      E     R GK  L V        +   + V  D  +  +     ++
Sbjct: 1146 VATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGAIVVDEDSELYAITSGGGVI 1205

Query: 672  IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
              +  Q+ +  R  KGVRL +  +G     I     E    +  
Sbjct: 1206 RTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESADGVSV 1249



 Score = 44.4 bits (103), Expect = 0.084,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 42/131 (32%), Gaps = 2/131 (1%)

Query: 527  RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
               +R +   +  +  + F   D L           +L+ ++ G A              
Sbjct: 1108 DEALRPMGRATSGVQGMRFNADDRLLSLNVVREDTYLLVATSGGYAKRTSIEEYPMQGRG 1167

Query: 587  GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKV 644
            G+ +  ++       +V A V D   +L  ++S G        ++       KG   + +
Sbjct: 1168 GKGVLTVMYDRRRGSLVGAIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNL 1227

Query: 645  SSEEKMKLVVK 655
               + +  + +
Sbjct: 1228 GEGDTLLAIAR 1238


>gi|28916610|gb|AAO59538.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 148/309 (47%), Positives = 218/309 (70%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+P++RD  KP HRRI++AM+++G+     +KKSARIVGEVIG  HPHGD +VYDS
Sbjct: 1   IVSRALPEVRDDLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGNYHPHGDSAVYDS 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA M++++  IL+ + +D +D++D 
Sbjct: 61  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAGMSKISMEILRDITKDTIDYQDN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMA +IP H + EI +  LA+ +NP+I+I +L
Sbjct: 121 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMAPNIPPHQLGEIIDGVLAVSENPDITIPEL 180

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV
Sbjct: 181 MEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 239

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T
Sbjct: 240 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 299

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 300 SFGINLLAL 308


>gi|37624500|gb|AAQ96046.1| DNA gyrase subunit A [Hafnia alvei]
          Length = 242

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/235 (55%), Positives = 173/235 (73%), Gaps = 1/235 (0%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSARIVG+VIG
Sbjct: 1   ELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARIVGDVIG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L
Sbjct: 61  KYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L
Sbjct: 121 ADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLNEVINGCL 180

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           A ID+  I++E L+++I GPDFPT   I+  R  I E+YR GRG   +RA+  VE
Sbjct: 181 AYIDDENITVEGLMQHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRAKAEVE 234


>gi|221482404|gb|EEE20752.1| DNA gyrase subunit A, putative [Toxoplasma gondii GT1]
          Length = 1594

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 182/510 (35%), Positives = 273/510 (53%), Gaps = 36/510 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
                  LE+ +L YA STI  RA+PD+RDG KPVHRR+I+AM ++ L    +F+K AR+
Sbjct: 275 DTQFVEELEKSFLCYAYSTILSRALPDVRDGLKPVHRRLIYAMQQLHLHPSGSFRKCARV 334

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+GK HPHGDQ+VYD+LVRLAQ FV R+PLI G GNFG++DGD  AA RYTE R+T+
Sbjct: 335 VGEVLGKFHPHGDQAVYDALVRLAQTFVARHPLIEGHGNFGSVDGDPPAAMRYTECRLTR 394

Query: 139 VAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             E  +L+ +D+  V FR  ++  + EPVVFP+  P +L  G+SGIAVGM+T IP HN+ 
Sbjct: 395 FCEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQGSSGIAVGMSTQIPPHNLH 454

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW- 256
           EI +A +ALI +PE+   +LL  + GPDFPTGG++V S E I  +Y+ GRG   +R R+ 
Sbjct: 455 EILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNS-EEIPGAYKEGRGRVLLRGRFH 513

Query: 257 -----------------------------CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
                                         V    +    +V+TE+PY V KS +++ IA
Sbjct: 514 LEGEDDDGDTVPGRDRNAEDEAERDEADRHVRNGRKNERRLVITELPYGVNKSTVMQVIA 573

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           ++I  K +  +  +RDES      V+    R  D   ++  +   ++++   P+++  L 
Sbjct: 574 QMISVKFLEGVTSVRDESDWRGIRVVLVLRRDADAHTILTLLLKHTNLQVYIPMHLIALE 633

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            G  P    L  +L  W+A R   L R  +        R  +L+GLL A   +D+++  +
Sbjct: 634 KGTKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHLLEGLLRAVSLMDDVVKTV 693

Query: 408 RNE----DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           R      D  + +       +  Q  A+L L L  L +LE  Q++ E         ++ S
Sbjct: 694 RESLSADDAKQKLTEPPLGFSPAQAQALLRLTLSRLTRLERRQLEEEAKAQKDRLSELAS 753

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           LL   ++ +  +  E++  K          
Sbjct: 754 LLAHDREIYELMVEELQAHKTRHKAPRKTK 783



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 28/118 (23%), Gaps = 32/118 (27%)

Query: 661  VAVVGENRKLLIFSIDQIPEMS--RGKGVRLQSYKDGGISDVICFKICE----------- 707
            + +V      L F    +      + +GVR    + G     +     E           
Sbjct: 1325 IVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPEVKEDEAKTESR 1384

Query: 708  -------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                                 + +      + +        + +R GVG  V +   R
Sbjct: 1385 KEGDSDETQSKNESSNEKAEPSLLIVTAAGFGKRIRVSALRMQRRRGVGVRVIRLVKR 1442


>gi|37624512|gb|AAQ96052.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624514|gb|AAQ96053.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624516|gb|AAQ96054.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624518|gb|AAQ96055.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624520|gb|AAQ96056.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624522|gb|AAQ96057.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 246

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 131/239 (54%), Positives = 175/239 (73%), Gaps = 1/239 (0%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEVI 180

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
              LA +D+ +ISIE L+ +I GPDFPT   I+  R  I E+YR GRG   +RAR  VE
Sbjct: 181 NGCLAYVDDEDISIEGLMAHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|37624482|gb|AAQ96037.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624484|gb|AAQ96038.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624486|gb|AAQ96039.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624488|gb|AAQ96040.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624490|gb|AAQ96041.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624492|gb|AAQ96042.1| DNA gyrase subunit A [Escherichia coli]
          Length = 246

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 133/239 (55%), Positives = 177/239 (74%), Gaps = 1/239 (0%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
              LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR GRG   +RAR  VE
Sbjct: 181 NGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|37624462|gb|AAQ96027.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624464|gb|AAQ96028.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624466|gb|AAQ96029.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624468|gb|AAQ96030.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624470|gb|AAQ96031.1| DNA gyrase subunit A [Citrobacter freundii]
          Length = 246

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 133/239 (55%), Positives = 178/239 (74%), Gaps = 1/239 (0%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A
Sbjct: 61  DVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
              LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR GRG   +RAR  VE
Sbjct: 181 NGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|37624502|gb|AAQ96047.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624504|gb|AAQ96048.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624506|gb|AAQ96049.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624508|gb|AAQ96050.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624510|gb|AAQ96051.1| DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 246

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 132/239 (55%), Positives = 178/239 (74%), Gaps = 1/239 (0%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A
Sbjct: 61  DVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
              LA ++N +ISIE L+E+I GPDFPT   I+  R  I E+YR GRG   +RAR  VE
Sbjct: 181 NGCLAYVENEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|291542542|emb|CBL15652.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus bromii L2-63]
          Length = 747

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 184/701 (26%), Positives = 324/701 (46%), Gaps = 33/701 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    +   + E Y+ YA+S I  RAIP++ DGFKP HR++++ M +MGL  G    KS
Sbjct: 26  EVVEQPIVSTIRENYMPYAMSVILSRAIPEI-DGFKPSHRKLLYMMYKMGLLNGGR-TKS 83

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFG---NIDGDSA-AAYR 130
           A IVG  + KL+PHGD ++YD++VRL++ +    +P +  +GNFG   +   D A AA R
Sbjct: 84  ANIVGATM-KLNPHGDSAIYDTMVRLSRGYEALLHPYVDSKGNFGKFYSR--DMAWAASR 140

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA++  +   + + +D+D VDF D Y+    EP + P  FP++L N  +GIAVGMA++
Sbjct: 141 YTEAKLDAICNELFRDIDKDTVDFVDNYDNTMKEPSLLPVAFPSVLVNANTGIAVGMASN 200

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           I S N++EICE   ALI +P+     +   +  PDF  G  I+     I + Y  GRG  
Sbjct: 201 ICSFNLREICETTAALIRDPD---HDIKSTLPAPDFTGGCQIIYDENVINQVYETGRGSI 257

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RA++      + + CI +  IP       +IEK+ +L+   ++  + DIRDE+  D  
Sbjct: 258 KLRAKYV---YDKSANCIDILSIPATTTCEVIIEKVIDLVKQGKVKEISDIRDETGIDGL 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R +D D LM  ++  + +E  +  N NVL    VP+V+ +  +L+EW+A R E
Sbjct: 315 KITIDLKRGVDADKLMTKLYRFTTLEDSYACNFNVLI-AGVPRVLGVKALLEEWIAFRIE 373

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
            + RR+ F       ++ +L+GL           +I+     E +  P ++  F + E Q
Sbjct: 374 CVRRRTYFDRNKKADKLHLLRGLEKILLDIDKAVKIVRETDEESEVVPNLMIGFGIDEIQ 433

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + +  ++LR L +    +   +L++L  E  ++D +L S  +    I  E++ + E + 
Sbjct: 434 AEYVAEIKLRHLNREYILKRTKDLEDLEKEIAELDEILKSKARIKTIIVKELKSIAEKYG 493

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALHFK 546
           +       R +        +   +   I   P+ +  +  G+ + +   S+ +S     K
Sbjct: 494 QP------RKSIIIYDDVARYEEETVEIPDYPVNLFFTKEGYFKKITPQSLRMSGEQKLK 547

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           +GD +   L       +L  +   + Y   A +    +       +   L  ++      
Sbjct: 548 DGDEIIQELEFTNNCDLLFFTDKCQVYKAKADDFAQTKASVLGDYVAAKLGFDEGENAVK 607

Query: 607 VYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           +  +      LL     G A  V        T + K     S +  +  ++ +  D   +
Sbjct: 608 MVVTKDYKGMLLFAFENGKAAKVPLESYATKTNRKKLTGAYSDKSPLVGLLYMPEDEEVL 667

Query: 664 V-GENRKLLIFSID--QIPEMSRGKGVRLQSYKDGGISDVI 701
               +  +L+       +      +GV +   K G     I
Sbjct: 668 FKASSGNMLLVHTGALALKTTRSTQGVAVLKPKKGHRLFSI 708


>gi|37624472|gb|AAQ96032.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624474|gb|AAQ96033.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624476|gb|AAQ96034.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624478|gb|AAQ96035.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624480|gb|AAQ96036.1| DNA gyrase subunit A [Enterobacter cloacae]
          Length = 246

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 132/239 (55%), Positives = 177/239 (74%), Gaps = 1/239 (0%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNITEVI 180

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
              LA I++ +ISIE L+E+I GPDFPT   I+  R  I E+YR GRG   +RAR  VE
Sbjct: 181 NGCLAYIEDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKIYIRARAEVE 238


>gi|46019126|emb|CAE52027.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 293

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 151/293 (51%), Positives = 213/293 (72%), Gaps = 1/293 (0%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F 
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP 
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPA 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+I++L+EYI GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITIQELMEYIPGPDF 180

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKI
Sbjct: 181 PTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKI 239

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           A+L+  K+I  + D+RDES  +   V+    R  +  +++ +++  + ++T F
Sbjct: 240 ADLVRDKKIEGITDLRDESDRNGMRVVIEIRRDANAHVILNNLYKQTALQTSF 292


>gi|320120331|gb|EFE28486.2| DNA gyrase subunit A [Filifactor alocis ATCC 35896]
          Length = 733

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 195/718 (27%), Positives = 350/718 (48%), Gaps = 29/718 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +++   +E N +  ++   L++ Y+ YA+S I  RAIP++ DGFKP HR++++ M  M L
Sbjct: 8   NSTQKYIETNKRTENIVDTLKQNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYRMNL 66

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFG---NID 122
              A   KSA IVG+ + KL+PHGD ++Y+++V+L++      +P I  +GNFG   + D
Sbjct: 67  L-NANRTKSANIVGQTM-KLNPHGDSAIYETMVKLSRGNESLLHPYIDSKGNFGKSTSRD 124

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
               AA RYTEA++  + + +   ++++ VDF D Y+    EPV+ P+ FPN+L     G
Sbjct: 125 MQ-FAAPRYTEAKLMPLCKELFGEIEKNTVDFVDNYDSTMKEPVLLPTTFPNILLKANKG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMA+SIPS N+ EIC   +A +   +     + ++I+GPDFP+GG ++   E +   
Sbjct: 184 IAVGMASSIPSFNLSEICNYTIAYL---KDINCNMFDFILGPDFPSGGELLFDEEEMKSI 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG F++R ++   +       I + EIPY      +IEKI +LI    +  + DIR
Sbjct: 241 YETGRGSFKLRGKYRYLK---KEQLIEIYEIPYTTTVEVIIEKIIDLIKDGTLREITDIR 297

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DE+  +   +     ++ D + +M  IF  + +E  F  N NVL   + P+++ +  I+ 
Sbjct: 298 DETDLNGLKITIDVRKNADVESMMGKIFKYTTLEDSFSCNFNVLIDNK-PKILGIKDIIF 356

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE---IIAIIRNEDKPKPVMVS 419
            WL  RR+ + RR+   M+   +R+ +L+GL    L+ID+   II     E    P +++
Sbjct: 357 HWLNFRRQCIVRRTLNEMEDKSKRLFLLQGLEKIILDIDKAIAIIRNTEKEIDVLPNLMN 416

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F++ E Q + IL ++LR+L K    +  SE+  L  E  K++ + +S K Q   I  E+
Sbjct: 417 AFAIEEKQAEYILEIKLRNLNKEYILKKISEIKELEEEITKLEEIYHSQKLQDKLIISEL 476

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +++ + + +      R+TT          + +    +      +  +    +  +     
Sbjct: 477 KKIIKTYGQE-----RKTTIVSKKDVVVYSKENFTEDYAVTMFLTKDGYLKKIPELSLRA 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLN 597
            S    K+ DS+   +  + TD  +LLST+   Y +   +L   +     +     + + 
Sbjct: 532 YSEQKLKDNDSILQQIEMNNTDVFMLLSTNNVLYQVKVSDLKDTKASLLGLFLPNYLKME 591

Query: 598 HNQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            N+ I+   F  +    ++     G    +  S     + + K     S++  +     +
Sbjct: 592 ENERIIQMIFPEEYEGYMVYFFENGKVAKINFSSYQTKSFRKKLQNVYSTQSPLVDCFHI 651

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             D    +  +N + L      IPE  SR  +GV++ +       + I     +   W
Sbjct: 652 KKDETFVIFTDNYRCLSIDTSSIPEKISRSSQGVKVINLNKNAKVERIELLESDDREW 709


>gi|45386065|gb|AAS59850.1| GyrM [uncultured bacterium]
          Length = 306

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 132/306 (43%), Positives = 196/306 (64%), Gaps = 2/306 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T   + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +    
Sbjct: 2   DQTFDNDRIVKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMGINNVS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KK AR+VGEV+GK HPHGD SVY +L R+AQ +  RY L+ GQG FG++DGDS AA
Sbjct: 62  TQPYKKCARVVGEVLGKYHPHGDSSVYGALGRMAQEWNMRYTLVDGQGTFGSVDGDSPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE R++++ E I+  +D++ VD  + +++   EP V P+K PNLL NG +GIAVGMA
Sbjct: 122 MRYTECRLSKMGEHIMDDLDKETVDMVNNFDDSLVEPSVMPTKIPNLLVNGGNGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++P+HN+ E+ +   A IDNP+I  + L++YI GPDFPTG  I      + ++Y  GRG
Sbjct: 182 TNMPTHNLGEVIDGCCAYIDNPDIDTDGLMQYIPGPDFPTGAYIY-GLAGVRDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  + E       IVVTEIPY V K+ L++ IA+L    +I  + ++ DES   
Sbjct: 241 RIVMRAKAEI-ESTETHDKIVVTEIPYGVNKADLVKYIADLANEHKIEGVANVNDESGRQ 299

Query: 309 VRIVLF 314
              ++ 
Sbjct: 300 GMRIVV 305


>gi|56159862|gb|AAV80742.1| gyrase subunit A [Bacillus sp. NRRL B-23935]
          Length = 270

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/271 (55%), Positives = 204/271 (75%), Gaps = 1/271 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+ 
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+EY
Sbjct: 121 SEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEY 180

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+
Sbjct: 181 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKA 239

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RLIEKIA+L+  K+I  + D+RDESA +   
Sbjct: 240 RLIEKIADLVRDKKIEGITDLRDESARNGMR 270


>gi|227518803|ref|ZP_03948852.1| possible DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
           TX0104]
 gi|227073716|gb|EEI11679.1| possible DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
           TX0104]
          Length = 334

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/328 (40%), Positives = 220/328 (67%), Gaps = 1/328 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLN 342
              + ++ + ++  +F  ++++  +  N
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFN 334


>gi|806907|gb|AAC43991.1| PAR-C [Mycoplasma genitalium]
          Length = 479

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/479 (31%), Positives = 265/479 (55%), Gaps = 8/479 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                N+   ++       +  YA   I++RA+PDLRDG KPV RRI++ M +MGL    
Sbjct: 2   DQKNNNLFQKAIEEVFAVSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPTT 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGE++GK HPHGD S+YD+++R++Q +   +  +S  GN G++DGD+AAA R
Sbjct: 62  PYKKSARAVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++     +L+ +D+  V F + +++ + EP V P+  PNL  NG SGIA G AT+
Sbjct: 122 YTETRLSLYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           I  HN  E+ ++    ID P   ++++L+ + GPDFPTGG +   +  + + Y+ G+G F
Sbjct: 182 IAPHNTNELLDSLCLRIDQPNCELKQILKIVKGPDFPTGGNVYFEKS-LSDIYQAGKGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            ++A++ V +       I +T+I Y+  K+ ++++I E+I   ++  +E + D S  +  
Sbjct: 241 IIQAKYEVNK---NLNQIEITQIRYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGI 297

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++      L  + +M  +F  + ++  F L  N +   R P  + L   L  +L    E
Sbjct: 298 RIIIKHKDFLPAEKIMAFLFKHTQLQVNFNL-NNTVIANRFPIQIGLLSYLDHFLKFCHE 356

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           ++  ++ + ++   +R+EI+ GL+ A   ID+II +IR+       +  ++  F  T NQ
Sbjct: 357 LIINKAKYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLIDNFKFTFNQ 416

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +AI++LRL  L   + +++  E + L       + L+ S K +   +  +    K+ F
Sbjct: 417 AEAIVSLRLYQLTNTDIFELNQEQNELEKTVISSEQLIASEKARNKLLKKQFEGYKKQF 475


>gi|110554877|gb|ABG75545.1| GyrA [Klebsiella pneumoniae]
          Length = 250

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/251 (55%), Positives = 183/251 (72%), Gaps = 2/251 (0%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ E+    LA +D+
Sbjct: 121 ETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEVINGCLAYVDD 180

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCI 268
            +ISIE L+ +I GPDFPT   I+  R  I E+YR GRG   +RAR  VE +   G   I
Sbjct: 181 EDISIEGLMAHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVEVDAKSGRETI 239

Query: 269 VVTEIPYQVQK 279
           +V EIPYQV K
Sbjct: 240 IVHEIPYQVNK 250


>gi|148985114|ref|ZP_01818353.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|147922559|gb|EDK73677.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
          Length = 689

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/623 (28%), Positives = 300/623 (48%), Gaps = 29/623 (4%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++D
Sbjct: 5   KNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMD 64

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           NPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   +R+R  +E    G   I
Sbjct: 65  NPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIVLRSRTEIETTKTGRERI 123

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           VVTE PY V K+++ E I  L+  KRI  +  +RDES  +    +    R    ++++ +
Sbjct: 124 VVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANVILNN 183

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +F ++ M+T F     +     +P+++ L  IL  ++ H++EV+ RR+ F  +  + R  
Sbjct: 184 LFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAH 242

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q  AIL++RLR L  LE  
Sbjct: 243 ILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQTQAILDMRLRRLTGLERD 302

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS      +RRT    +   
Sbjct: 303 KIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD-----KRRTEL--MVGQ 355

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
             +   + +IE+  + + +SNRG+I+          K     +     K+ D ++  +  
Sbjct: 356 VLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST 415

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD----ST 611
            T D +L  +  G+ Y L    +       +   +  L+ L+ ++ I T    +      
Sbjct: 416 STHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRSDD 475

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKL 670
             L   +  G        E     + G   L +  E+++  V+   GD  + +  +    
Sbjct: 476 AYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYA 535

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           + F+   +  MSR   GV+  + ++G         I +    +    + Y +        
Sbjct: 536 VRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVLVITEKGYGKRTVATEYP 594

Query: 730 LGKRGGVGSLVPKGFPRSGKFLS 752
              RGG G    K   ++G    
Sbjct: 595 TKGRGGKGMQTAKITEKNGLLAG 617


>gi|298500212|ref|ZP_07010017.1| DNA topoisomerase IV, A subunit [Vibrio cholerae MAK 757]
 gi|297540905|gb|EFH76959.1| DNA topoisomerase IV, A subunit [Vibrio cholerae MAK 757]
          Length = 655

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 221/633 (34%), Positives = 361/633 (57%), Gaps = 23/633 (3%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AA   Y EA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAV
Sbjct: 15  AAHALY-EAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAV 73

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR 
Sbjct: 74  GMATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRS 133

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES
Sbjct: 134 GRGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDES 188

Query: 306 AEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
             +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL E
Sbjct: 189 DHENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSE 248

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           W++ RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF L
Sbjct: 249 WISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDL 308

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   
Sbjct: 309 TDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADA 368

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F        RR+   E   A   T +  M   E ITVV+S +GWIR  K H+VD  +L
Sbjct: 369 DKFGD-----DRRSPLVEREEAKALTERDLM-PSEAITVVLSEKGWIRHAKGHNVDCQSL 422

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
           ++K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I 
Sbjct: 423 NYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIR 482

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDH 660
              + +     LV S  G  F+ +  ++++  R GK  + +    ++     +     D 
Sbjct: 483 QVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDE 542

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-IDS 714
           +  +    ++L+F I  +P++S+GKG ++ +                  + +G +  + +
Sbjct: 543 ILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYA 602

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
             R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 603 GKRKLGLKVSDLDNFRGERGRRGALLPRGLQRV 635


>gi|313625788|gb|EFR95409.1| DNA gyrase/topoisomerase IV, A subunit [Listeria innocua FSL
           J1-023]
          Length = 262

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/256 (50%), Positives = 181/256 (70%), Gaps = 1/256 (0%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+H++ E+ +  LAL  +PEISI  L+EYI GPDFPT G+I   R  I  +Y  GRG  
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMI-MGRSGIRRAYESGRGSI 241

Query: 251 RVRARWCVEEVGRGSW 266
            VR R  +EE   G  
Sbjct: 242 TVRGRVDIEEKKNGKE 257


>gi|332273143|gb|AEE39255.1| DNA gyrase subunit A [Aeromonas simiae]
 gi|332273145|gb|AEE39256.1| DNA gyrase subunit A [Aeromonas simiae]
          Length = 235

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LALI+N +I
Sbjct: 121 DWVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLALIENGDI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            I++L+EYI GPDFPTGG I+  R  I+++YR GRG   VRA+  VE
Sbjct: 181 GIDELMEYIPGPDFPTGG-IINGRSGILQAYRTGRGSIYVRAKAEVE 226


>gi|47607410|gb|AAT36612.1| gyrase A [Bacillus mojavensis]
          Length = 299

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/300 (50%), Positives = 217/300 (72%), Gaps = 1/300 (0%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F 
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKI
Sbjct: 181 PTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKI 239

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           A+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F +NM  L
Sbjct: 240 ADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINMLAL 299


>gi|28916624|gb|AAO59545.1| gyrase A [Bacillus mojavensis]
          Length = 299

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/300 (50%), Positives = 217/300 (72%), Gaps = 1/300 (0%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F 
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKI
Sbjct: 181 PTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKI 239

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           A+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F +NM  L
Sbjct: 240 ADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFGINMLAL 299


>gi|156084089|ref|XP_001609528.1| DNA gyrase A subunit [Babesia bovis T2Bo]
 gi|154796779|gb|EDO05960.1| DNA gyrase A subunit, putative [Babesia bovis]
          Length = 1051

 Score =  386 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 200/837 (23%), Positives = 347/837 (41%), Gaps = 109/837 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             V+ + L   L + ++ YALS I  RA+PD RDG K VHRRI+ AM  M L     ++K
Sbjct: 96  HTVQDLELCDELSQSFMKYALSIILGRALPDARDGLKIVHRRILWAMQVMKLGASTPYRK 155

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A++VG+V+GK HPH D+SVYD+L RL+Q F+ R PL+ G GNFG+ D D  AA RYTE 
Sbjct: 156 CAKVVGDVLGKYHPHSDKSVYDALCRLSQLFMMRVPLVDGHGNFGSTD-DPPAAMRYTEC 214

Query: 135 RMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R++  +E L+L  + ++ VD    ++  + EP V PSK P LL NG+SGIAVG+AT+IP 
Sbjct: 215 RLSPFSEKLLLAEMGKNTVDMLPNFDSTEMEPTVLPSKVPLLLINGSSGIAVGLATNIPP 274

Query: 194 HNVQEICEAALALI-DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN +EI +AA  +  ++  +  E+LL  + GPDFPTGG IV S +++ + Y  G+G   +
Sbjct: 275 HNPEEILKAASLMAKNHGNVDTEELLNIVRGPDFPTGGHIVTSIDALRKIYTTGKGSIML 334

Query: 253 RARW--------------------------CVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           +A++                           +         I+V E+PY V+ S ++  I
Sbjct: 335 QAKYIYEERIKPRNSKRESDVVVNTYSDPSHLSFTSGSRVSIIVKELPYNVRLSDVMLAI 394

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL----DPDLLMESIFMLSDMETRFPLN 342
           ++ +    +  + D+RDES      ++    + +    + + +M+ +  +S + + F  N
Sbjct: 395 SKAVETGALRGISDLRDESDRGGLRLVIELKKHITTHLEVEEIMQKLKKMSGLCSFFKCN 454

Query: 343 MNVLSMGRV-PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
              L      P  + L   LK WL  R + + +R   + +    R+ I+KG  IA+  ID
Sbjct: 455 FIALDSSGTKPVRLSLYSALKIWLEFRVQTVRKRIERQREQAKERLNIVKGFAIAFNKID 514

Query: 402 EIIAIIRNEDKPKPVMVS-----RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           +I+ ++RN       M          L   Q  A+L + L  L ++E  +I  E   L  
Sbjct: 515 DIVHMVRNSSSSAEAMRMLSEKRYGGLNAEQASAVLRMSLSQLSRIERDKIDLEEKELSE 574

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             ++ + +L      ++ I  E+  +++   K   +  R TT              A   
Sbjct: 575 SIKRYNHILGDESHIYSLIYSELEHIRQNPEKHYTVRHRCTTLSVSGHTSLGDGDVAQDY 634

Query: 517 KE------PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                      V   +        ++          + +      + H    +++++  G
Sbjct: 635 PPELGGNDEEFVDSISATIAEDHIANEPGNDPGDLVKQNPDLEGHNPHDEPSLIVMNNYG 694

Query: 571 KAYTLPAGNLLSGRGHG---------------------EAIQLLIDLNHNQDIVTAFVYD 609
               +   N                             E   +  ++  ++  +   V  
Sbjct: 695 LMQRIKLDNSFFRSQKSRYIPSSRLQQPYQGQYSIGEGENEDVAPEITQSELQLHYGVCR 754

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTF---LKVSSEEKMKLVVKV---------- 656
                +++S  G  F++  S +    + G +    +K+ S E ++               
Sbjct: 755 PGDSCMMISKDGTCFVLPVSALRLCNK-GYSIWKQVKLKSPENVEYFTVTSKLLFSQDQN 813

Query: 657 --------------TGDHVAVVGENRKLLIFSIDQIPEMSRGKG----VRLQSYK---DG 695
                         T  ++ ++  + ++ I S    P      G      L   +   + 
Sbjct: 814 SGVSNCMYKLIMDETTSYLVLIFTDGQVGIISTKHFP-----SGHLYKNPLIRLRLWNNK 868

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSE--NDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  +     C          R Y+     NDLLG +  RG     + K    + K 
Sbjct: 869 ELKPIFAMFCCPDDDIFVGTLRGYSLRVRLNDLLGGMEHRGKTRKKLIKLKE-NDKV 924



 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 69/236 (29%), Gaps = 55/236 (23%)

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI---------- 602
                   D  +++S DG  + LP   L      G +I   + L   +++          
Sbjct: 749 HYGVCRPGDSCMMISKDGTCFVLPVSALRLCN-KGYSIWKQVKLKSPENVEYFTVTSKLL 807

Query: 603 -------------VTAFVYDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTFLKVSSE 647
                            + ++T  L+++ + G   I+      +    +     L++ + 
Sbjct: 808 FSQDQNSGVSNCMYKLIMDETTSYLVLIFTDGQVGIISTKHFPSGHLYKNPLIRLRLWNN 867

Query: 648 EKMKLVVK---VTGDHVAVVGENRKLLIFSIDQI------PEMSRGKGVRLQSYKDGGIS 698
           +++K +        D + V       L   ++ +          + +  +L   K+    
Sbjct: 868 KELKPIFAMFCCPDDDIFVGTLRGYSLRVRLNDLLGGMEHR--GKTR-KKLIKLKENDKV 924

Query: 699 -----------------DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
                            ++  F+  +    +  +     +  +     L + GG G
Sbjct: 925 TCGAILESLSNVENDAKEICRFENYDNRHLLLLSEHGRAKLLHISELQLRRHGGYG 980


>gi|7107363|gb|AAF36389.1|AF221695_1 ParC [Yersinia pestis]
          Length = 386

 Score =  386 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 184/391 (47%), Positives = 272/391 (69%), Gaps = 8/391 (2%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF
Sbjct: 1   IGDGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
             RYPL+ GQGN+G  D   S AA RYTE+R+++ AE++L  + +  VD+   ++    E
Sbjct: 61  SYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGP 224
           P + P++ PN+L NGT+GIAVGMAT IP HNV+EI +A LALID P  S+++LLE++ GP
Sbjct: 121 PKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVLALIDKPTTSLDELLEFVQGP 180

Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
           DFPT   I+  R+ I + Y+ GRG  R+RA W  E+        V+T +P+QV  ++++E
Sbjct: 181 DFPTEAEIITPRDDIRKIYQNGRGSVRMRAVWKKEDGSA-----VITALPHQVSGAKVLE 235

Query: 285 KIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           +IA  + AK++P++ED+RDES  +   R+V+ P+   +D D +M  +F  +D+E  + +N
Sbjct: 236 QIANQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDLDQVMSHLFATTDLERSYRIN 295

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           MN++ +   P V  L  IL EWL  RR+ +  R +FR++ + +R+ IL+GLLIA+LNIDE
Sbjct: 296 MNMIGLDNRPSVKGLLEILTEWLVFRRQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDE 355

Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           +I IIR ED PKP+++ RFS++E Q +A  N
Sbjct: 356 VIHIIRTEDDPKPLLMQRFSISETQAEASSN 386


>gi|332273153|gb|AEE39260.1| DNA gyrase subunit A [Aeromonas schubertii]
 gi|332273155|gb|AEE39261.1| DNA gyrase subunit A [Aeromonas schubertii]
 gi|332273157|gb|AEE39262.1| DNA gyrase subunit A [Aeromonas schubertii]
          Length = 235

 Score =  386 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/227 (56%), Positives = 169/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LALI +  I
Sbjct: 121 DWVPNYDGTELIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLALIADGSI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            I+ L+EYI GPDFPTGG I+  R  I+++YR GRG   VRA+  VE
Sbjct: 181 GIDDLMEYIPGPDFPTGG-IINGRSGIIQAYRTGRGSIYVRAKAEVE 226


>gi|4099112|gb|AAD00551.1| topoisomerase II ParC [Mycoplasma arthritidis]
          Length = 450

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 155/439 (35%), Positives = 253/439 (57%), Gaps = 9/439 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +   ++   + ER+  Y+   I++RAIPD RDG KPV RRI+++M  + L    AF+K
Sbjct: 14  ETIIEKNMVDVMSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMYGLKLYNNQAFRK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+IVGEV+G+ HPHGD S+Y++LVR++Q +   +PLI   GN G+ID D AAA RYTE+
Sbjct: 74  SAKIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSIDDDPAAAMRYTES 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +++ELIL+ +D   V     +++ + EPVV PS  PNLL NG+ GIA G AT IP H
Sbjct: 134 RLEKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSKGIAAGFATEIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + LI NP IS+E+L + + GPDFPTGG ++   E I +++  G+G   + +
Sbjct: 194 NLSEVIDATIKLIKNPLISLEELKQIVQGPDFPTGG-VIHGIEGIAQAFETGQGKINISS 252

Query: 255 RWCVEEVGRGSWCIV---VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           R+           I+   + E P+ V KS+L+  I  L+I K I  ++++RD+S  +   
Sbjct: 253 RYRFVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVKEVRDQSNREGFS 312

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +        + + ++  +   +D+   +     V      P++M L  +L  +L+H +++
Sbjct: 313 IYLELEDEANAEAIINYLMSKTDLRISYNY-NMVAIHENSPKLMNLQMLLFTYLSHLKDI 371

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----PKPVMVSRFSLTENQ 427
             +   F ++  + R+EI++G +      DE+I +I+N D         +   F  T  Q
Sbjct: 372 NTKGIEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSKKGVIEALEKTFGFTNIQ 431

Query: 428 VDAILNLRLRSLRKLEEYQ 446
             AI  LRL  L K+++ +
Sbjct: 432 ATAIAELRLYKLSKMDQLE 450


>gi|332273109|gb|AEE39238.1| DNA gyrase subunit A [Aeromonas hydrophila]
 gi|332273111|gb|AEE39239.1| DNA gyrase subunit A [Aeromonas hydrophila]
 gi|332273113|gb|AEE39240.1| DNA gyrase subunit A [Aeromonas hydrophila]
 gi|332273121|gb|AEE39244.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 235

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 173/227 (76%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGG-IINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332273091|gb|AEE39229.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
 gi|332273093|gb|AEE39230.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273095|gb|AEE39231.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273101|gb|AEE39234.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273107|gb|AEE39237.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
 gi|332273123|gb|AEE39245.1| DNA gyrase subunit A [Aeromonas jandaei]
 gi|332273125|gb|AEE39246.1| DNA gyrase subunit A [Aeromonas jandaei]
 gi|332273127|gb|AEE39247.1| DNA gyrase subunit A [Aeromonas jandaei]
 gi|332273129|gb|AEE39248.1| DNA gyrase subunit A [Aeromonas jandaei]
 gi|332273131|gb|AEE39249.1| DNA gyrase subunit A [Aeromonas jandaei]
 gi|332273133|gb|AEE39250.1| DNA gyrase subunit A [Aeromonas jandaei]
          Length = 235

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 173/227 (76%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGG-IINGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|332273149|gb|AEE39258.1| DNA gyrase subunit A [Aeromonas diversa]
 gi|332273151|gb|AEE39259.1| DNA gyrase subunit A [Aeromonas diversa]
          Length = 235

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/227 (55%), Positives = 169/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           ++   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LALI +  I
Sbjct: 121 EWVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLALIADGSI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            I+ L+EYI GPDFPTGG I+  R  I+++YR GRG   VRA+  VE
Sbjct: 181 GIDDLMEYIPGPDFPTGG-IINGRSGIIQAYRTGRGSIYVRAKAEVE 226


>gi|332273135|gb|AEE39251.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
 gi|332273137|gb|AEE39252.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
 gi|332273139|gb|AEE39253.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
 gi|332273141|gb|AEE39254.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
          Length = 235

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 173/227 (76%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGG-IINGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|222137880|gb|ACM45453.1| DNA gyrase subunit A [Aeromonas fluvialis]
          Length = 235

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGG-IINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|218658940|ref|ZP_03514870.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 223

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 118/223 (52%), Positives = 161/223 (72%), Gaps = 1/223 (0%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+ + A  +
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +  
Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           +ALI++P I + +L++ I GPDFPTG  I+  R  I  +Y  G
Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETG 223


>gi|37624530|gb|AAQ96061.1| DNA gyrase subunit A [Serratia plymuthica]
          Length = 215

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 121/213 (56%), Positives = 160/213 (75%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSAR+VG
Sbjct: 1   NIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMSKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLAEVV 180

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
              LA ID+  ISIE L+E+I GPDFPT  II 
Sbjct: 181 NGCLAYIDDENISIEGLMEHIPGPDFPTAAIIN 213


>gi|332273089|gb|AEE39228.1| DNA gyrase subunit A [Aeromonas cavernicola]
          Length = 235

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 171/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGSL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGG-IINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|328957566|ref|YP_004374952.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
 gi|328673890|gb|AEB29936.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
          Length = 325

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/326 (39%), Positives = 210/326 (64%), Gaps = 1/326 (0%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM+  G      F+KSA+ VG VIG 
Sbjct: 1   MGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNVEGNTSDKGFRKSAKTVGNVIGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVY+++VRL+Q + QR  LI   GN G++DGD  AA RYTEAR+++++  +++
Sbjct: 61  YHPHGDSSVYEAMVRLSQNWKQREVLIEMHGNNGSMDGDPPAAMRYTEARLSKISAELVR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   +++ D EP VFP+ +PNLL NG +GI+ G AT IP HN+ E+ +A + 
Sbjct: 121 DIDKETVDFVLNFDDTDEEPTVFPASYPNLLVNGATGISAGYATDIPPHNLGEVIDATVH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+P+ S+  L+++I GPDFPTG I+      I ++Y  G+G   VR++  +EEV  G 
Sbjct: 181 LIDHPDASVSDLMQHIKGPDFPTGAILQ-GVAGIKQAYETGKGKIIVRSKTRIEEVRGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+ EIPY+V K+ L+ K+ E+ + K++  + ++RDES  +   ++    +  +   +
Sbjct: 240 EQIVINEIPYEVNKAVLVRKMDEIRLNKKVDGIAEVRDESDRNGLQIVVELKKEANAKGI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRV 351
           +  +   +D++  +  NM  +   + 
Sbjct: 300 LNYLLKNTDLQVAYNFNMVAIDKKKT 325


>gi|332273079|gb|AEE39223.1| DNA gyrase subunit A [Aeromonas veronii]
 gi|332273081|gb|AEE39224.1| DNA gyrase subunit A [Aeromonas veronii]
 gi|332273083|gb|AEE39225.1| DNA gyrase subunit A [Aeromonas veronii]
 gi|332273085|gb|AEE39226.1| DNA gyrase subunit A [Aeromonas veronii]
 gi|332273087|gb|AEE39227.1| DNA gyrase subunit A [Aeromonas veronii]
          Length = 235

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGG-IINGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|332273065|gb|AEE39216.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
 gi|332273067|gb|AEE39217.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
 gi|332273069|gb|AEE39218.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
 gi|332273071|gb|AEE39219.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
 gi|332273073|gb|AEE39220.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
          Length = 235

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGG-IINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332272951|gb|AEE39159.1| DNA gyrase subunit A [Aeromonas bestiarum]
 gi|332272953|gb|AEE39160.1| DNA gyrase subunit A [Aeromonas bestiarum]
 gi|332272955|gb|AEE39161.1| DNA gyrase subunit A [Aeromonas bestiarum]
 gi|332272957|gb|AEE39162.1| DNA gyrase subunit A [Aeromonas bestiarum]
 gi|332272959|gb|AEE39163.1| DNA gyrase subunit A [Aeromonas bestiarum]
 gi|332272979|gb|AEE39173.1| DNA gyrase subunit A [Aeromonas popoffii]
          Length = 235

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 171/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENSDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG  I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGA-IINGRAGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332272961|gb|AEE39164.1| DNA gyrase subunit A [Aeromonas piscicola]
 gi|332272963|gb|AEE39165.1| DNA gyrase subunit A [Aeromonas piscicola]
 gi|332272965|gb|AEE39166.1| DNA gyrase subunit A [Aeromonas piscicola]
 gi|332272967|gb|AEE39167.1| DNA gyrase subunit A [Aeromonas piscicola]
 gi|332272969|gb|AEE39168.1| DNA gyrase subunit A [Aeromonas piscicola]
          Length = 235

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 171/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG  I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGA-IINGRAGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332272939|gb|AEE39153.1| DNA gyrase subunit A [Aeromonas salmonicida]
 gi|332272941|gb|AEE39154.1| DNA gyrase subunit A [Aeromonas salmonicida]
 gi|332272943|gb|AEE39155.1| DNA gyrase subunit A [Aeromonas salmonicida]
 gi|332272945|gb|AEE39156.1| DNA gyrase subunit A [Aeromonas salmonicida]
 gi|332272947|gb|AEE39157.1| DNA gyrase subunit A [Aeromonas salmonicida]
 gi|332272949|gb|AEE39158.1| DNA gyrase subunit A [Aeromonas salmonicida]
          Length = 235

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGNL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG  I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGA-IINGRAGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332273057|gb|AEE39212.1| DNA gyrase subunit A [Aeromonas sobria]
 gi|332273059|gb|AEE39213.1| DNA gyrase subunit A [Aeromonas sobria]
 gi|332273061|gb|AEE39214.1| DNA gyrase subunit A [Aeromonas sobria]
 gi|332273063|gb|AEE39215.1| DNA gyrase subunit A [Aeromonas sobria]
          Length = 235

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/233 (54%), Positives = 171/233 (73%), Gaps = 1/233 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGNL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +I++L+ YI GPDFPTG  I+  R  IV++YR GRG   VRA+  VE   +  
Sbjct: 181 TIDELMTYITGPDFPTGA-IINGRAGIVQAYRTGRGSVYVRAKAEVEVDDKTH 232


>gi|226201191|gb|ACO37588.1| DNA gyrase subunit A [Aeromonas sanarellii]
          Length = 235

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/227 (55%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ ++ GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTHVTGPDFPTGG-IINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332273047|gb|AEE39207.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|332273049|gb|AEE39208.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|332273051|gb|AEE39209.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|332273053|gb|AEE39210.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|332273055|gb|AEE39211.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 235

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/227 (55%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ ++ GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTHVTGPDFPTGG-IINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332273001|gb|AEE39184.1| DNA gyrase subunit A [Aeromonas tecta]
 gi|332273003|gb|AEE39185.1| DNA gyrase subunit A [Aeromonas tecta]
 gi|332273005|gb|AEE39186.1| DNA gyrase subunit A [Aeromonas tecta]
 gi|332273007|gb|AEE39187.1| DNA gyrase subunit A [Aeromonas tecta]
 gi|332273009|gb|AEE39188.1| DNA gyrase subunit A [Aeromonas tecta]
          Length = 235

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 171/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG  I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYISGPDFPTGA-IINGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|332273075|gb|AEE39221.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
          Length = 235

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLSDLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGG-IINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332272991|gb|AEE39179.1| DNA gyrase subunit A [Aeromonas eucrenophila]
 gi|332272993|gb|AEE39180.1| DNA gyrase subunit A [Aeromonas eucrenophila]
 gi|332272995|gb|AEE39181.1| DNA gyrase subunit A [Aeromonas eucrenophila]
 gi|332272997|gb|AEE39182.1| DNA gyrase subunit A [Aeromonas eucrenophila]
 gi|332272999|gb|AEE39183.1| DNA gyrase subunit A [Aeromonas eucrenophila]
          Length = 235

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGNL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG  I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYISGPDFPTGA-IINGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|332273043|gb|AEE39205.1| DNA gyrase subunit A [Aeromonas bivalvium]
 gi|332273045|gb|AEE39206.1| DNA gyrase subunit A [Aeromonas bivalvium]
          Length = 235

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/227 (55%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           ++++L+ Y+ GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TVDELMAYVTGPDFPTGG-IINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|226201187|gb|ACO37586.1| DNA gyrase subunit A [Aeromonas taiwanensis]
          Length = 235

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/227 (55%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ ++ GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTHVTGPDFPTGG-IINGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|325114455|emb|CBZ50011.1| putative DNA gyrase subunit A [Neospora caninum Liverpool]
          Length = 1533

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 176/525 (33%), Positives = 268/525 (51%), Gaps = 51/525 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
                  LE+ +L YA STI  RA+PD+RDG KPVHRR+I+AM ++ +     F+K AR+
Sbjct: 142 DTQFVEELEKSFLCYAYSTILSRALPDVRDGLKPVHRRLIYAMQQLHVHPSGPFRKCARV 201

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+GK HPHGDQ+VYD+L RLAQ FV R+PLI G GNFG++DGD  AA RYTE R+T+
Sbjct: 202 VGEVLGKFHPHGDQAVYDALARLAQTFVARHPLIDGHGNFGSVDGDPPAAMRYTECRLTR 261

Query: 139 VAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             E  +L+ + +  V FR  ++  + EPVVFP+  P LL  G+SGIAVGM+T IP HN+ 
Sbjct: 262 FCEDALLKNLSDKVVPFRPNFDASEEEPVVFPASVPLLLIQGSSGIAVGMSTQIPPHNLH 321

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALI +P +  E+LL+ + GPDFPTGG ++ + E I  +Y+ G G   +R R  
Sbjct: 322 EVIDAAVALIRDPNLPDEELLKIVPGPDFPTGG-LLVNAEEIPSAYKEGHGRVLLRGRVH 380

Query: 258 ---------------------------------------------VEEVGRGSWCIVVTE 272
                                                          +  R    +V+TE
Sbjct: 381 LEGEEGEEEGEEEGEEDVKKSAVRGRDREREDGGNEEQEGKRSRIKGKEKRKERRLVITE 440

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PY V KS +++ IA++I  K +  +  +RDES      V+    R  D   ++  +   
Sbjct: 441 LPYGVNKSTVMQVIAQMISVKFLEGVASVRDESDWRGIRVVLVLRREADAHTILTLLLKH 500

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           ++++   P+N+  L  G  P    L  +L  W++ R + L R  +        R  +L+G
Sbjct: 501 TNLQVYIPMNLIALEKGTRPVRFSLKSLLLSWISFRFDTLRRLLAAEEAERKARSHLLEG 560

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
           LL A   +D+++  +R                   +  Q  A+L L L  L +LE  Q++
Sbjct: 561 LLRAVNLMDQVVKTVRESLSADEAKRKLAEPPLGFSPAQAQALLRLTLSRLTRLERRQLE 620

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            E         ++ SLL    + ++ +  E++ +K          
Sbjct: 621 DEAAEQTRRLARLASLLAHDNEIYDLMTDELKALKSRHRAPRRTK 665



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/135 (9%), Positives = 29/135 (21%), Gaps = 49/135 (36%)

Query: 661  VAVVGENRKLLIFSIDQIPEMS--RGKGVRLQSYKDGGISDVICFKICE----------- 707
            + +V  +   L F    +      + +GVR    + G     +     +           
Sbjct: 1218 IVIVTRHGMGLRFPASSLRAAGSSKTRGVRAIRLRAGDSVASVAVVPPQLEGPEKTTEAA 1277

Query: 708  --------------------GLTWIDSAGRSY----------------NRSENDLLGWLG 731
                                  + +      +                 +        + 
Sbjct: 1278 KEGDSQATETGEARRSSNEGEPSLLIVTAAGFVHFAFLHSADCLLVPAGKRLRVSALRMQ 1337

Query: 732  KRGGVGSLVPKGFPR 746
            +R GVG  V +   R
Sbjct: 1338 RRRGVGVRVIRLVQR 1352


>gi|302524595|ref|ZP_07276937.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
 gi|302433490|gb|EFL05306.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
          Length = 832

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 194/703 (27%), Positives = 329/703 (46%), Gaps = 46/703 (6%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +V   +GK HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA RYTEARM+
Sbjct: 88  VVHNCMGKYHPHGDVAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAASRYTEARMS 146

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             A L++  + ED VDFR  Y+    EP V P+ +PNLL NGTSGIAVGMAT++  HN+ 
Sbjct: 147 NEAMLLVGELGEDTVDFRPNYDGSLEEPSVLPAAYPNLLVNGTSGIAVGMATNMIPHNLG 206

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+  AA  LI++P  +++KL+EY+ GPD PTGG ++   + + ++Y  GRG  R+RA   
Sbjct: 207 EVIGAARWLINHPNATLDKLMEYVPGPDLPTGGSLL-GLDEVRKAYETGRGVVRMRANVE 265

Query: 258 VE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI-PLLEDIRDESAEDV-RIVL 313
               E  RG   I VTE+PY V   ++IEKI + +   +    + D++D +  +    ++
Sbjct: 266 TGPLEGSRGRQAITVTELPYGVGPEKVIEKITDEVNKSKRLTGIADVKDLTDRENGTRLV 325

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                 ++P  L+  ++ L+ +E  F +N  VL     PQ + L  +L+ +L HR EV+ 
Sbjct: 326 IECKVGVNPQALLADLYRLTPLEQSFGINNLVLVD-GQPQTLGLKALLEVFLKHRYEVVT 384

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ +R +  + R+ ++ GLLIA LNID++I +IR  +     K  ++++F L+E Q   
Sbjct: 385 RRTRYRRRKREERLHLVDGLLIALLNIDKVIRLIRESENAAAAKDGLMTKFKLSEIQATY 444

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+  LR L K +  ++++E D L AE  ++ ++L         ++ E+ ++ + F    
Sbjct: 445 ILDTPLRRLTKYDRLELENEQDKLRAEIAELTTILEDESVLKKLVSTELAKIAKDFPTE- 503

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
               RRT   +    +     +         +P  V++S  G +    + S + S +  +
Sbjct: 504 ----RRTRLIDGDLKEVLAASKPSGPLEVADDPCQVILSATGLVARTAAESEEASEVRRR 559

Query: 547 EGDSLKIALHAHTT----DRILLLSTDGKAYT--------LPAGNLLSGRGHGEAIQLLI 594
            G     A+ A        ++LL+++ G+A+         LP          G A + L+
Sbjct: 560 NGRVKHDAVSAVVHTTARGQVLLVTSRGRAFKTDVLPLPVLPEQAGTVSLRGGMAAKELV 619

Query: 595 DLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            L   + +V              L + +  G   +                + +   +++
Sbjct: 620 PLEKGERVVGIAPLGEQAGDSPGLAIGTRGGVVKVCAPD--WPVRSDEFEVISLKPGDEI 677

Query: 651 KLVV-KVTGDH-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE 707
                   G+  +A +  +  LL F+   I     +  G+          +        +
Sbjct: 678 VGATWLTDGNETLAFISSDSSLLRFAASLIRPQGTKSGGMAGMKLAANATAIFFGAIRTD 737

Query: 708 GLT-----WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                    + + G+S  +           R   G    +   
Sbjct: 738 DEEHGEPMVVTATGQS-VKVTPFSEYPAKGRATGGVRAHRFLK 779


>gi|332272971|gb|AEE39169.1| DNA gyrase subunit A [Aeromonas popoffii]
 gi|332272973|gb|AEE39170.1| DNA gyrase subunit A [Aeromonas popoffii]
 gi|332272975|gb|AEE39171.1| DNA gyrase subunit A [Aeromonas popoffii]
 gi|332272977|gb|AEE39172.1| DNA gyrase subunit A [Aeromonas popoffii]
          Length = 235

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/233 (55%), Positives = 172/233 (73%), Gaps = 1/233 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENSDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +I++L+ YI GPDFPTG  I+  R  IV++YR GRG   VRA+  VE   +  
Sbjct: 181 TIDELMTYITGPDFPTGA-IINGRAGIVQAYRTGRGSVYVRAKAEVEVDDKTH 232


>gi|332273147|gb|AEE39257.1| DNA gyrase subunit A [Aeromonas simiae]
          Length = 235

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 173/227 (76%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD+
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDR 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LALI+N +I
Sbjct: 121 DWVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLALIENGDI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            I++L+EYI GPDFPTGG I+  R  I+++YR GRG   VRA+  VE
Sbjct: 181 GIDELMEYIPGPDFPTGG-IINGRSGILQAYRTGRGSIYVRAKADVE 226


>gi|256376407|ref|YP_003100067.1| DNA topoisomerase (ATP-hydrolyzing) [Actinosynnema mirum DSM 43827]
 gi|255920710|gb|ACU36221.1| DNA topoisomerase (ATP-hydrolyzing) [Actinosynnema mirum DSM 43827]
          Length = 1143

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 197/709 (27%), Positives = 338/709 (47%), Gaps = 44/709 (6%)

Query: 78   IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            +V   +GK HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA RYTEARM+
Sbjct: 401  VVHNCMGKYHPHGDTAIYDAMVRLAQDFSLNTPLIDGHGNFGSPD-DGPAASRYTEARMS 459

Query: 138  QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
              A L++  +DED V+FR  Y+   +EP V P+ FPNLL NGTSGIAVGMAT++  HN+ 
Sbjct: 460  GAAMLLVGELDEDTVEFRPNYDGSLTEPAVLPAAFPNLLVNGTSGIAVGMATNMIPHNLG 519

Query: 198  EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
            E+  AA  L+ +P+  +EKL+E+I GPD PTGG+++   + + ++Y  GRG  R+RA   
Sbjct: 520  EVVAAARHLVKHPDADLEKLMEFIPGPDLPTGGMLL-GLDEVRKAYETGRGVVRMRATVT 578

Query: 258  VE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI-PLLEDIRDESAEDV-RIVL 313
                E  RG   I VTE+PY V   ++IEKI + +   +    + D++D +  +    ++
Sbjct: 579  TGPLEGSRGRQAITVTELPYGVGPEKIIEKITDEVNKSKRLTGIADVKDLTDRENGIRLV 638

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                  ++P  L+  ++ L+ +E  F +N  VL     PQ + L  +L+ +LAHR EV+ 
Sbjct: 639  IECKVGVNPQALLADLYRLTPLEQSFGINNLVLVD-GQPQTLGLKALLEVFLAHRYEVVT 697

Query: 374  RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDA 430
            RR+ FR +  + R+ ++ GLL A ++ID++I +IR  +  +     +VS F+L+E Q   
Sbjct: 698  RRTRFRRRKREDRLHLVDGLLKALIDIDKVIKLIRRSENAQAAKEGLVSTFALSETQAAY 757

Query: 431  ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
            IL+  LR L + +  +++ E + L  E  ++ ++L+  K     ++ E+ +V +  S   
Sbjct: 758  ILDTPLRRLTRFDSVELEGEQERLRGEIAELSTILDDDKVLRRVVSNELGKVAKDLS--- 814

Query: 491  DLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHS----VDLSA 542
                RRTT  +    +     +         +P  VV+S  G +    + S         
Sbjct: 815  --AERRTTLLDGDLKEVLAASRTSGPLEVADDPCQVVLSATGLVARTAAESEEAVEGRKR 872

Query: 543  LHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--------LPAGNLLSGRGHGEAIQLLI 594
                + D++   +H     ++LL+++ G+A+         LP G        G  ++ L+
Sbjct: 873  SGRAKHDAVAATVHTTARGQVLLVTSRGRAFKTDVLPLPVLPQGEGTLSLSGGVPVRELV 932

Query: 595  DLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
             L   + +V       T    L + + +G   +                + + + +++  
Sbjct: 933  GLEAGERVVGIAPLGETDSPGLALGTKQGVVKVCAPE--WPVRSDEFEVIGLKAGDEVVG 990

Query: 653  VV-KVTGDH-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEG 708
                  G   +  V     LL ++   +     RG G+   +   +  +      +  + 
Sbjct: 991  AQWLADGQEALVFVSSEASLLRYAASLVRPQGLRGGGMAGITLPGEASVVFFGAVRTDDA 1050

Query: 709  L----TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   + S G+S  +     L     R   G    +        + +
Sbjct: 1051 EHGEPVVVTSTGQS-VKVTPFDLYPAKGRATGGVRAHRFLKGEDGLVLA 1098



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 42/67 (62%)

Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           V   SL   +E+ YL YA S I  RA+PD RDG KPVHRRI+ +M+E      + + KS
Sbjct: 22 KVIDNSLTTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILFSMNEQNHRPTSPYVKS 81

Query: 76 ARIVGEV 82
          +R+VG+ 
Sbjct: 82 SRVVGDC 88


>gi|332273023|gb|AEE39195.1| DNA gyrase subunit A [Aeromonas media]
 gi|332273027|gb|AEE39197.1| DNA gyrase subunit A [Aeromonas media]
          Length = 235

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/227 (55%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGAL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ Y+ GPDFPTGG I+  R  I+++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYVTGPDFPTGG-IINGRSGIIQAYRTGRGSVYVRAKAEVE 226


>gi|332273025|gb|AEE39196.1| DNA gyrase subunit A [Aeromonas media]
          Length = 235

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/227 (55%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGAL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ Y+ GPDFPTGG I+  R  I+++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYVTGPDFPTGG-IINGRSGIIQAYRTGRGSVYVRAKAEVE 226


>gi|332273031|gb|AEE39199.1| DNA gyrase subunit A [Aeromonas encheleia]
 gi|332273033|gb|AEE39200.1| DNA gyrase subunit A [Aeromonas encheleia]
 gi|332273035|gb|AEE39201.1| DNA gyrase subunit A [Aeromonas encheleia]
 gi|332273037|gb|AEE39202.1| DNA gyrase subunit A [Aeromonas encheleia]
 gi|332273039|gb|AEE39203.1| DNA gyrase subunit A [Aeromonas encheleia]
 gi|332273041|gb|AEE39204.1| DNA gyrase subunit A [Aeromonas encheleia]
          Length = 235

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/227 (55%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALIDN ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKIPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIDNGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG  I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYISGPDFPTGA-IINGRAGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332273021|gb|AEE39194.1| DNA gyrase subunit A [Aeromonas media]
          Length = 235

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/227 (55%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGAL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ Y+ GPDFPTGG I+  R  I+++YR GRG   VRAR  VE
Sbjct: 181 TIDELMTYVTGPDFPTGG-IINGRSGIIQAYRTGRGSVYVRARAEVE 226


>gi|331270971|ref|YP_004385682.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
 gi|329127363|gb|AEB77307.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
          Length = 1417

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 184/768 (23%), Positives = 348/768 (45%), Gaps = 53/768 (6%)

Query: 15   ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            +N +   +   L E YL YA+  IKERAI  + DGFKP HR+++  + E  L       K
Sbjct: 665  DNEQEKDIVKVLNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHESNLYNKR--TK 721

Query: 75   SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS--AAAYRYT 132
            SA IVG  +  L+ HGD S+Y++LVR+AQ     YP ++G+GNFG     S   A  RYT
Sbjct: 722  SAHIVGSNMS-LNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTSKSLQNAHMRYT 780

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            EA  + + +    G++++AVDF   ++ E  EP++ P+ FPN+L N   GIAVGMA++ P
Sbjct: 781  EAGASNINKEFFHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANKGIAVGMASATP 840

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            S N++E+C+  +A I +  I +     Y++ PDF TGG IV   + + + Y  G+G   +
Sbjct: 841  SFNLKEVCDLTIAYIKDTNIVVSD---YLLCPDFATGGFIVRDVDKLNQIYETGQGSVTL 897

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDV 309
            RA++ V++       I+VTEIPY   +  +++ I  L        I  + ++ D +    
Sbjct: 898  RAKYGVKD-----NEIIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNITNVIDSTDRKG 952

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
              +     ++ + +LLME ++  + ++  + LNMN++ + ++P+V+ +  IL EWL  RR
Sbjct: 953  MSITIKIKKNTNIELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIKRILDEWLKFRR 1012

Query: 370  EVLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
              + R S++  +  + ++ +L    I       +  I     ++D     +   F + + 
Sbjct: 1013 MCISRVSNYDKKDKEHKLHLLNAFKIILTDIDALVHITRNAIDDDDMIKQLQLYFKIDQE 1072

Query: 427  QVDAILNLRLRSLRKLEEYQ-IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + + N++L+ L K    +  + ++  L  E   + ++ N   +  N I  +++ +++ 
Sbjct: 1073 QAEYVSNIKLKKLNKNNIIEITEQQITALQQEISDLKNIQNDETRINNIIIQQLQNIRDK 1132

Query: 486  FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
            +        R+T    V      TL+   IE    T+V++ + +I+  +  S    +   
Sbjct: 1133 YKIP-----RKTEIINVEDIPSVTLEDIKIEDFNPTLVLTEQQYIKKNRVFS---QSQKL 1184

Query: 546  KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE----AIQLLIDLNHNQD 601
            K+ D +      +  D +LL +  G         L   +           L   L ++++
Sbjct: 1185 KDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLENDEE 1244

Query: 602  IVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
            ++           ++ V   G     +         +       +++ K+  +  +T D 
Sbjct: 1245 VIYISTTKDYKGSVVSVFENGYIARTDLQTYKPKQNRQIPMSAYNTDSKIVSIQLITNDT 1304

Query: 660  HVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQSYK---DGGISDVICFKICEGLTWIDS 714
             + +V +  K LI +  QI    SR  +GV         +  I+ +I   + +       
Sbjct: 1305 DILLVSQEGKSLIINTSQIRPTKSRNTQGVSGMKIDIETNKIIASIIGVTVDDNFNI--E 1362

Query: 715  AGRSYNR-----------SENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              +  ++            E+      G R   G+ +     ++ K +
Sbjct: 1363 TEKGKSKFIMLNDVAPNGKESMTEYLKGNRNTQGNFIYNTRQKNDKVI 1410


>gi|332273029|gb|AEE39198.1| DNA gyrase subunit A [Aeromonas media]
          Length = 235

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/227 (55%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGAL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ Y+ GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYVTGPDFPTGG-IINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332273115|gb|AEE39241.1| DNA gyrase subunit A [Aeromonas hydrophila]
 gi|332273117|gb|AEE39242.1| DNA gyrase subunit A [Aeromonas hydrophila]
 gi|332273119|gb|AEE39243.1| DNA gyrase subunit A [Aeromonas aquariorum]
          Length = 235

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 173/227 (76%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGG-IINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332273097|gb|AEE39232.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273099|gb|AEE39233.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273103|gb|AEE39235.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273105|gb|AEE39236.1| DNA gyrase subunit A [Aeromonas aquariorum]
          Length = 235

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 173/227 (76%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGG-IINGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|332273011|gb|AEE39189.1| DNA gyrase subunit A [Aeromonas sp. MDC 2467]
 gi|332273013|gb|AEE39190.1| DNA gyrase subunit A [Aeromonas sp. MDC 2473]
 gi|332273015|gb|AEE39191.1| DNA gyrase subunit A [Aeromonas sp. MDC 2468]
 gi|332273017|gb|AEE39192.1| DNA gyrase subunit A [Aeromonas sp. MDC 2469]
 gi|332273019|gb|AEE39193.1| DNA gyrase subunit A [Aeromonas sp. MDC 2472]
          Length = 235

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/227 (55%), Positives = 169/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I+ L+ Y+ GPDFPTG  I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDDLMTYVTGPDFPTGA-IINGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|309807645|ref|ZP_07701587.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|308169111|gb|EFO71187.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
          Length = 369

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 139/367 (37%), Positives = 228/367 (62%), Gaps = 2/367 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG ++   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGG-LIIGNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHM-APVQLGLKRILSSYLEHK 359

Query: 369 REVLFRR 375
           +    + 
Sbjct: 360 KRRCIKT 366


>gi|332273077|gb|AEE39222.1| DNA gyrase subunit A [Aeromonas veronii]
          Length = 235

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGG I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGG-IINGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|270160515|gb|ACZ63223.1| DNA gyrase subunit A [Aeromonas rivuli]
 gi|270160519|gb|ACZ63225.1| DNA gyrase subunit A [Aeromonas rivuli]
          Length = 235

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/227 (55%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY ++ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMMVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTELIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGSL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG  I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYISGPDFPTGA-IINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|153803745|ref|ZP_01958331.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae MZO-3]
 gi|124120719|gb|EAY39462.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae MZO-3]
          Length = 456

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 202/465 (43%), Positives = 300/465 (64%), Gaps = 13/465 (2%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G 
Sbjct: 1   MSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            D   S AA RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG
Sbjct: 61  PDDPKSFAAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMAT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     +
Sbjct: 121 VTGIAVGMATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVEL 180

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            + YR GRG  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++E
Sbjct: 181 EKIYRSGRGSIKMRAVWCKE-----GSDIVITALPHQVSGAKLLEQIAAQMRAKKLPMVE 235

Query: 300 DIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           D+RDES  +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L
Sbjct: 236 DLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGL 295

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL EW++ RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+
Sbjct: 296 VQILSEWISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVL 355

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++RF LT+ Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  
Sbjct: 356 MARFDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKK 415

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           EI+   + F        RR+   E   A   T +  M  +    V
Sbjct: 416 EIKADADKFGD-----DRRSPLVEREEAKALTERDLMPSEAITVV 455


>gi|150390856|ref|YP_001320905.1| DNA topoisomerase (ATP-hydrolyzing) [Alkaliphilus metalliredigens
           QYMF]
 gi|149950718|gb|ABR49246.1| DNA topoisomerase (ATP-hydrolyzing) [Alkaliphilus metalliredigens
           QYMF]
          Length = 930

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 199/752 (26%), Positives = 347/752 (46%), Gaps = 51/752 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             ++   +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ MS+MGL       K
Sbjct: 6   NEIEVQEIEDTLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMSQMGLL-TKGRSK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV-QRYPLISGQGNFG---NIDGDSAAAYR 130
           SA IVG  + KL+PHGDQ++Y+++V++ +      +  +  +GNFG   + D   A+A R
Sbjct: 64  SANIVGTTM-KLNPHGDQAIYETMVKMTRGHQGLLHAYVDSKGNFGKVYSRDMREASA-R 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA++ +  + I   +D++ VDF D Y+    EP + P+ FPN+L     GIAVGMA  
Sbjct: 122 YTEAKLEKFTQEIFSNIDKNVVDFVDNYDSTTKEPTLLPTTFPNILVKYNKGIAVGMAEH 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IPS N++E+CEA +A + + EI + +   Y+  PDF TGG ++ +  ++ + Y  GRG F
Sbjct: 182 IPSFNLKEVCEATIAYLKDKEIDLLE---YLKAPDFSTGGELIFNEVTMKQVYHTGRGTF 238

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VR ++   +       I + EIPY      +IE I EL+   +I  + DIRDE+ ++  
Sbjct: 239 KVRGKYRYVKAD---NAIEIYEIPYTTSIEAIIESIIELVKKGKIKEITDIRDETDKNGL 295

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R ++PD LM   F  + +E  F  N N+L     P+VM +  IL  W+A R  
Sbjct: 296 KITIDLKRGVNPDDLMVKFFKWTKLEDSFGCNFNILI-NGHPKVMGVKEILDHWIAFRLS 354

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE---IIAIIRNEDKPKPVMVSRFSLTENQ 427
            L R+  F +  ++ ++ +LKGL    LNI E   +I   + +      ++ +F L   Q
Sbjct: 355 CLKRQVQFEIDKLEEKLNLLKGLEKIQLNIHEVVDVIQNTKKDKDVIANLMEQFDLNLAQ 414

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + I  ++LRSL +    +   E+  +  E +++  +L    +Q   I  +++ + E + 
Sbjct: 415 AEYIAEIKLRSLNQELILKKIKEISAIEKELKRLGMVLARESKQNEIIVNDLKRISEAYG 474

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALHFK 546
                   R T        +   ++ +IE   + + ++N G+I+ +   S+  S     K
Sbjct: 475 IP------RKTDIINENEVEVLSEEILIENYNMKLFLTNEGYIKKISLASLRSSGDHKLK 528

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVT 604
           + D +   +       +LL S     Y + A  L   +          ++ L+ ++ I+ 
Sbjct: 529 DNDYIVQEIDGTNRGEVLLFSNKETVYKIKAYELEDSKASNLGQYLNNVLGLSSDEIILH 588

Query: 605 AFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
               +     +L     G    +  +     T + +     S +  +  +  +  D   +
Sbjct: 589 IVCTEDYQGHMLFFFENGKGAKIPITSYETKTNRKQLANAYSGDSPLVYISSIEEDLEMM 648

Query: 664 VGEN-RKLLIFSIDQI-PEMSR-GKGV------RLQSYKDGGISDVICFKICEGLTWIDS 714
              N  K LIF+ +++ P  SR  KGV      +  S K     D +          +D 
Sbjct: 649 ATSNLNKTLIFNTEEMSPINSRNSKGVQVFKCKKGISLKKIKPMDEVSPDEMLNQKVLDE 708

Query: 715 --------AGRSYNRS------ENDLLGWLGK 732
                       Y +         D    L K
Sbjct: 709 NPRVKFFLTKGGYIKKIPLTTLVEDEEQRLKK 740


>gi|121511862|gb|ABM55382.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511864|gb|ABM55383.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511866|gb|ABM55384.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511868|gb|ABM55385.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511870|gb|ABM55386.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511872|gb|ABM55387.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 660

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/625 (27%), Positives = 305/625 (48%), Gaps = 31/625 (4%)

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMAT IP HN+ E+ EA L LI
Sbjct: 1   DKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIPPHNLGELLEAILYLI 60

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG  R+RA+  + E       
Sbjct: 61  DTPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRGRVRIRAKHHI-ETKAKKEI 118

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  +   V+    +    ++++ 
Sbjct: 119 IVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVVIELKKDAMSEIVLN 178

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           +++  + MET F + + +    + P+V  L  IL  +L+HR+ V+ RR+ F ++    R 
Sbjct: 179 NLYKSTPMETTFGI-ILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRRTIFDLEKAKARA 237

Query: 388 EILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            IL+GL IA  NIDE++ IIR+     + K  + +RF L+  Q  AIL++RL  L  L+ 
Sbjct: 238 HILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETRFDLSAIQSQAILDMRLGRLTGLQR 297

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            ++++E   L+    +++++L S ++    I  E+ E+KE FS             E+  
Sbjct: 298 DKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEKFSNDRKT--------EIED 349

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
           +      + +I  EP+ V I++ G+++          K       A+   + D ++    
Sbjct: 350 SYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFIERFFV 409

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDST 611
           ++T D ++ ++  G+ Y L    +        G+A+  LI+L  ++ I+       +D +
Sbjct: 410 SNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLINLRPDEKIMEIIPTPDFDES 469

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK--VTGDHVAVVGENRK 669
             L+  +  G       +E       G   + +   +++       V   ++ +     +
Sbjct: 470 KSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQ 529

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            + F +++  +  R  +GVR   +K D            E    +  + +   +      
Sbjct: 530 CIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSEDQEILTVSEKGIGKRTTVEE 589

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
             L  R G G +  K   ++G  + 
Sbjct: 590 YRLTNRAGSGVISMKLSTKTGNVIG 614



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/469 (10%), Positives = 132/469 (28%), Gaps = 22/469 (4%)

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + A +  E        I+   + ++                 R  +LE ++       
Sbjct: 192 IILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRRTIFDLEKAKARAHILEGLKIAVDNID 251

Query: 310 RIVLFPKNRSLDPD--LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +V   ++ S D +    +E+ F LS ++++  L+M +  +  + +        +  +  
Sbjct: 252 EVVRIIRSSSNDAEAKESLETRFDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILI 311

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
                  RS  ++  I R          +     EI       D    +      +T   
Sbjct: 312 AELEAILRSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITH 371

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-----EIREV 482
              +  + +++  K +             +       +++       +        ++  
Sbjct: 372 NGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVY 431

Query: 483 KEIFSKSTDLGRRRTTFCEVSRA--DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           K         G+       +         +     ++    V  +  G I+    +    
Sbjct: 432 KIPEGSRIAKGKAVVNLINLRPDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSN 491

Query: 541 SALH-------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL- 592
              +           + +   +    T  I++ ++ G+                  ++  
Sbjct: 492 IRSNGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGI 551

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV--SSEE 648
              ++ +  +    +     ++L VS KG        E     R   G   +K+   +  
Sbjct: 552 KFKIDTDFVVDADVISSEDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGN 611

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
            +  V+      + ++    K++   ++ I +  R   GV + +     
Sbjct: 612 VIGEVLVDDTQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSND 660


>gi|332272981|gb|AEE39174.1| DNA gyrase subunit A [Aeromonas molluscorum]
 gi|332272983|gb|AEE39175.1| DNA gyrase subunit A [Aeromonas molluscorum]
 gi|332272985|gb|AEE39176.1| DNA gyrase subunit A [Aeromonas molluscorum]
 gi|332272987|gb|AEE39177.1| DNA gyrase subunit A [Aeromonas molluscorum]
 gi|332272989|gb|AEE39178.1| DNA gyrase subunit A [Aeromonas molluscorum]
          Length = 235

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/227 (55%), Positives = 171/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY ++ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMMVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENNDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG  I+  R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYISGPDFPTGA-IINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|168187078|ref|ZP_02621713.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
 gi|169295011|gb|EDS77144.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
          Length = 1417

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 186/766 (24%), Positives = 350/766 (45%), Gaps = 49/766 (6%)

Query: 15   ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            +N +   +   L E YL YA+  IKERAI  + DGFKP HR+++  + E  L       K
Sbjct: 665  DNEQEKDIVKVLNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHESNLYNKR--TK 721

Query: 75   SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS--AAAYRYT 132
            SA IVG  +  L+ HGD S+Y++LVR+AQ     YP ++G+GNFG     S   A  RYT
Sbjct: 722  SAHIVGSNMS-LNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTSKSLQNAHMRYT 780

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            EA  + + +    G++++AVDF   ++ E  EP++ P+ FPN+L N   GIAVGMA++ P
Sbjct: 781  EAGASNINKEFFHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANKGIAVGMASATP 840

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            S N++E+C+  +A I +  I +     Y++ PDF TGG IV   + + + Y  G+G   +
Sbjct: 841  SFNLKEVCDLTIAYIKDTNIVVSD---YLLCPDFATGGFIVRDVDKLNQIYETGQGSVTL 897

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDV 309
            RA++ V++       I+VTEIPY   +  +++ I  L        I  + ++ D +    
Sbjct: 898  RAKYEVKD-----NEIIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNITNVIDSTDRKG 952

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
              +     ++ + +LLME ++  + ++  + LNMN++ + ++P+V+ +  IL EWL  RR
Sbjct: 953  MSITIKIKKNTNIELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIKRILDEWLKFRR 1012

Query: 370  EVLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
              + R S++  +  + ++ +L    I       +  I     ++D     +   F + + 
Sbjct: 1013 MCISRVSNYDKKDKEHKLHLLNAFKIILTDIDALVHITRNAIDDDDMIKQLQLYFKIDQE 1072

Query: 427  QVDAILNLRLRSLRKLEEYQ-IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + + N++L+ L K    +  + ++  L  E   + ++ N   +  N I  +++ +++ 
Sbjct: 1073 QAEYVSNIKLKKLNKNNIIEITEQQITALQQEISDLKNIQNDETRINNIIIQQLQNIRDK 1132

Query: 486  FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
            +        R+T    V      TL+   IE    T+V++ + +I+  +  S    +   
Sbjct: 1133 YKIP-----RKTEIINVEDIPSVTLEDIKIEDFNPTLVLTEQQYIKKNRVFS---QSQKL 1184

Query: 546  KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE----AIQLLIDLNHNQD 601
            K+ D +      +  D +LL +  G         L   +           L   L +++ 
Sbjct: 1185 KDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLENDEK 1244

Query: 602  IVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
            ++      +    ++ V   GN   ++  +      +       +++ K+  +  +T D 
Sbjct: 1245 VIYISTTKNYKGSVITVFENGNVARIDLKQYKTKQNRQVPMDAYNTDSKLVSISVITDDT 1304

Query: 660  HVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQSYK---DGGISDVICFKICEGLTWIDS 714
            ++ +V +  K LI +  QI    SR  +GV         +  I  +I   + +       
Sbjct: 1305 NILLVSQEGKALIINTSQIRPTKSRNTQGVAGMKIDTEHNKVIGSIIGVTVEDNFDIKTE 1364

Query: 715  AGRSYNRSENDL---------LGWLGKRGGVGSLVPKGFPRSGKFL 751
              +S     +D+             G R   G+ +     +  K +
Sbjct: 1365 KSKSKFIMLDDIAPNGKQSMTEYLKGNRNTQGNFIYNTRQKHDKVI 1410


>gi|284097496|ref|ZP_06385583.1| DNA gyrase subunit A [Candidatus Poribacteria sp. WGA-A3]
 gi|283830992|gb|EFC35015.1| DNA gyrase subunit A [Candidatus Poribacteria sp. WGA-A3]
          Length = 250

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 169/239 (70%), Gaps = 1/239 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L EE    V++   +   YL YA+S I  RA+PD+RDG KPVHRRI++ M++MGL    A
Sbjct: 2   LTEERFTQVAIEDEMRLSYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMNQMGLAHNRA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+IVGE++G  HPHGD ++YD+LVR+AQ F  RY L+ GQGN+G++DGD  AA RY
Sbjct: 62  YRKSAKIVGEIMGNYHPHGDSAIYDALVRMAQDFNMRYTLVDGQGNYGSVDGDPPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T++A  +L  +D++ VDF  TY+E D EP+V P+K PNLL NG  GIAVG AT+I
Sbjct: 122 TEARLTKLAGEMLADIDKETVDFGPTYDESDVEPLVLPAKLPNLLLNGAGGIAVGYATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P+HN+ E+  A L +++NP  ++ +L++ I GPDFPT G  +   + I ++Y  G G  
Sbjct: 182 PTHNLGEVVTALLYVLENPAATLPELMDMIPGPDFPTAG-FIYGTQGIRDAYEHGAGAV 239


>gi|84994460|ref|XP_951952.1| topoisomerase IV subunit A [Theileria annulata strain Ankara]
 gi|65302113|emb|CAI74220.1| topoisomerase IV subunit A, putative [Theileria annulata]
          Length = 993

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 193/753 (25%), Positives = 353/753 (46%), Gaps = 43/753 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N   +E+++ + L   +   +L YALS I  RA+PD RDG K VHRRII AM  + LD 
Sbjct: 91  ENYDEKESLEYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLKLDP 150

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++K A++VG+V+G  HPHGD+SVYD+L RL+Q F+ + PLI G GNFG+ + D  AA
Sbjct: 151 NGQYRKCAKVVGDVLGNYHPHGDKSVYDALCRLSQDFIMKVPLIDGHGNFGS-NNDPPAA 209

Query: 129 YRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            RYTE R+T  ++ ++L  ++ + +D+   ++  + EP+V P + PN+L NG+SGIAVG+
Sbjct: 210 MRYTECRLTNFSKTVMLNDINFNTIDYTPNFDNTNIEPMVLPCRLPNILINGSSGIAVGL 269

Query: 188 ATSIPSHNVQEICEAALALIDN---------------------PEISIEKLLEYIIGPDF 226
           AT+IP HN  EI  A +  I                             +++  ++GPDF
Sbjct: 270 ATNIPPHNPAEIINATIQYIKYILYIDIIHRSHLKTDATVDDVNGDKSAEVVNEVLGPDF 329

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PTGG+I  +RE++ + Y  G+G   +++R+  EE  +    IV+ +IPY  + + +IE I
Sbjct: 330 PTGGVIRTTREAMRKIYESGKGTVLIQSRFVFEE--KLRISIVINQIPYNTRINDIIENI 387

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
              I    I  + D++DES  +   ++    R++   + ++ I    +  T +  N N +
Sbjct: 388 NRNIKNNNIIGVNDVKDESDRNGTRIVVELKRNISSVIEIQEIMTKLERLTEYNYNCNFI 447

Query: 347 S-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           +     P    L  ILK WL  R EVL R+    +    + ++I+   +  YLNI+ II 
Sbjct: 448 TLDQDRPIRFSLSSILKIWLNFRLEVLKRKYKHLLLKFKKNLDIINAYITVYLNINTIIN 507

Query: 406 IIRNEDK-PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
             +N  K    ++   F L ++Q+ +++ L LR L +L    +  +      + E  +++
Sbjct: 508 SFQNHHKGVYKLLKEEFKLNDDQMKSVMRLTLRQLNQLNIENLNEKSAEYTKQIEFYENI 567

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITV 522
           L +    +++I  ++ E++E F       +R T     +   + + T++    E      
Sbjct: 568 LKNDNNLYSEIISDLTELREHF----KNIKRNTLIIYTDEPNSFENTIEGEGAEGNTDGK 623

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V S      ++  ++        K       +    T +    + T   +         +
Sbjct: 624 VGSVVESDDNIIIYNRLGRISKIKLDKKFYKSNKNKTLNTPNPVHTHSTSPDESQDKAET 683

Query: 583 GRGHGEAIQLLIDLNHNQDI-VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                 A + L  ++  + + V     +++ K++++   G  F V  S++    +    F
Sbjct: 684 PSVKKSAKKSLNKIDETEALEVGYCSNNNSNKIMMIMKNGRIFHVNSSKLKLCKKGYDIF 743

Query: 642 LKVS-SEEKMKLVVKVTGD---HVAVVG-ENRKLLIFSIDQIP-EMSRGKGVRLQSYKDG 695
             +  + +++   V  TG     + +VG  +  + +F+  ++  ++S+ +     + KD 
Sbjct: 744 KYLGINNDQLIEYVTSTGKNIGDIIMVGYGSGVMSVFNAKKLNFKLSKTRLNLKLNLKDK 803

Query: 696 GISDVICFKIC---EGLTWIDSAGRSYNRSEND 725
            I       +    +         R Y    N 
Sbjct: 804 EIRFFFNCTLDHILQNPFLFICTKRGYCIKINL 836



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 57/564 (10%), Positives = 143/564 (25%), Gaps = 66/564 (11%)

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
            + +               I  S  SI++ +   R     R    +    + +  I+   
Sbjct: 436 RLTEYNYNCNFITLDQDRPIRFSLSSILKIWLNFRLEVLKRKYKHLLLKFKKNLDIINAY 495

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           I   +  + +I             L E+ +    +   ++     +    ++   +    
Sbjct: 496 ITVYLNINTIINSFQNHHKGVYKLLKEEFKLNDDQMKSVMRLTLRQLNQLNIENLNEKSA 555

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
              +        + +   +                  E++   +  R    + +      
Sbjct: 556 EYTKQIEFYENILKNDNNL----------------YSEIISDLTELREHFKNIK---RNT 596

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
           L+I     +     I  E           S+ E+  + I+  RL  + K++  +   + +
Sbjct: 597 LIIYTDEPNSFENTIEGEGAEGNTDGKVGSVVESDDNIIIYNRLGRISKIKLDKKFYKSN 656

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
                    + +                   +  +K +      T   EV         +
Sbjct: 657 KN-KTLNTPNPVHTHSTSPDESQDKAETPSVKKSAKKSLNKIDETEALEVGYCSNNNSNK 715

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            M+  +   +   N   ++  K        L       ++           +++   G  
Sbjct: 716 IMMIMKNGRIFHVNSSKLKLCKKGYDIFKYLGINNDQLIEYVTSTGKNIGDIIMVGYGSG 775

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF---VYD---STCKLLVVSSKGNAFIV 626
                 N           +L + LN     +  F     D       L + + +G    +
Sbjct: 776 VM-SVFNAKKLNFKLSKTRLNLKLNLKDKEIRFFFNCTLDHILQNPFLFICTKRGYCIKI 834

Query: 627 EESEIIAN--TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR------------KLL 671
               II     +K    +++   +++          H+ ++                KL+
Sbjct: 835 NLKNIIEKFDKKKNLRLIRMYKGDELASSCLTNDQGHILILTSKGNSNHHNNCIGRYKLI 894

Query: 672 IFSIDQIPEMS-RGKG-------VRLQSYKDGGISDV---------ICFKICEGLTWIDS 714
             ++  I     +GKG        +L    +   S+              I E    +  
Sbjct: 895 --NVSDIKLQRIKGKGYNILRNKQKLIKKAESEDSEANLENVVTCTNVDNIKEKKNILLI 952

Query: 715 AGRSYNRSEND-----LLGWLGKR 733
           +       ++      L     KR
Sbjct: 953 SKGGVLSKKSLHLKPGLRHHKTKR 976


>gi|13810781|gb|AAK40035.1|AF272025_1 DNA gyrase subunit A [Bacillus vallismortis]
          Length = 301

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 146/302 (48%), Positives = 214/302 (70%), Gaps = 2/302 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L
Sbjct: 1   PVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYML 60

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+
Sbjct: 61  VDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSR 120

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NPEI+I+ L+E I GPDFPT G 
Sbjct: 121 FPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQDLMEVIPGPDFPTAGQ 180

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+ 
Sbjct: 181 IL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVR 239

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            K+I  + D+RDES      V+    R  + ++++ +++  + ++T F +N+  L     
Sbjct: 240 DKKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQ 298

Query: 352 PQ 353
           P+
Sbjct: 299 PK 300


>gi|85707863|ref|ZP_01038929.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
 gi|85689397|gb|EAQ29400.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
          Length = 622

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 296/622 (47%), Positives = 420/622 (67%), Gaps = 16/622 (2%)

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           ++G+D   VDF  TYN E+ EP + P  FPNLL NG SGIAVGMAT+IPSHNV E+ +A 
Sbjct: 1   MEGLDAGTVDFIPTYNGEEEEPELMPGLFPNLLGNGASGIAVGMATNIPSHNVAEVIDAT 60

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC------ 257
           L LIDNP +  E+L+E + GPDF TGG +V+S E + E+YR GRG FR+R  +       
Sbjct: 61  LELIDNPHVEHERLMELMPGPDFATGGQLVDSAEVLSEAYRTGRGSFRLRGVFHAPEAEK 120

Query: 258 -------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
                  +E +G G W +V++EIPYQV K +LIE+IA+ I  K++P+LED+RDES E +R
Sbjct: 121 TEDIEAGIERLGGGQWQLVISEIPYQVAKGKLIEQIAQAIADKKLPILEDVRDESDESIR 180

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IVL P++R++DPDLL ESIF L+DMETRF LNMNVL   R P VM L  +L+ W A + E
Sbjct: 181 IVLVPRSRNVDPDLLKESIFKLTDMETRFGLNMNVLDATRTPMVMGLKELLQNWTAAQIE 240

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           +L RR+ +R+  I+RR+E++ G ++A+LN+D +I IIR ED+PK VM++ FSLT+ Q +A
Sbjct: 241 ILQRRTRYRLGQIERRLELVDGYIVAFLNLDRVIEIIRYEDEPKAVMMAEFSLTDRQAEA 300

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ILN+RLRSLRKLEE ++K E   LLAE+E+++ LL S  +Q  ++  ++R +++ +++ T
Sbjct: 301 ILNMRLRSLRKLEEMELKQEKSELLAEQEELNKLLESPARQRTRLKKDLRALRKDYAEDT 360

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            LG RRT   E + A       AMIEKEP+TV++S +GWIR+ K H        +KEGD+
Sbjct: 361 ALGARRTRIEEAAPA-VEFSMDAMIEKEPVTVILSQKGWIRAAKGHVDLAQEFKYKEGDA 419

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L   LHA TTD++L+  +DG+ YTL A  L   RG GE ++ +IDL     I    V+  
Sbjct: 420 LAFILHAQTTDKLLIAGSDGRFYTLGADKLPGARGFGEPVRTMIDLPAETQIAAMMVHKE 479

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENR 668
             KLL+ SS G  FI E  E++A T+KGK  + +  + K++++ +V    DHVA VGENR
Sbjct: 480 GGKLLLASSIGKGFIAETKELLAETKKGKQVVNLKGDAKLQVIREVPENHDHVAAVGENR 539

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           KL++F+++++P M+RG+GV LQ Y+DGG+SD   F + +GL+W         R+END+  
Sbjct: 540 KLIVFNLEEMPVMARGQGVMLQRYRDGGLSDATTFVLEDGLSWQMGGSGERTRTENDIWQ 599

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
           W   RG  G L P+GFP++ +F
Sbjct: 600 WKVARGAAGRLPPQGFPKNNRF 621


>gi|3548920|gb|AAC68576.1| DNA gyrase A [Serratia marcescens subsp. marcescens ATCC 13880]
          Length = 196

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 107/194 (55%), Positives = 144/194 (74%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSAR
Sbjct: 1   TPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMS 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLA 180

Query: 198 EICEAALALIDNPE 211
           E+    LA ID+  
Sbjct: 181 EVVNGCLAYIDDEN 194


>gi|13810771|gb|AAK40030.1|AF272020_1 DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 270

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/271 (52%), Positives = 198/271 (73%), Gaps = 1/271 (0%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F 
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDF 180

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKI
Sbjct: 181 PTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKI 239

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           A+L+  K+I  + D+RDES      ++    
Sbjct: 240 ADLVRDKKIEGITDLRDESDRTGMRIVIEIR 270


>gi|312275252|gb|ADQ57976.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/356 (44%), Positives = 229/356 (64%), Gaps = 2/356 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT   I+  R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAA-IINGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D S +    ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDH-GQPKIFNLKQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
           I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN      
Sbjct: 299 IIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADE 354


>gi|323694736|ref|ZP_08108894.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
 gi|323501173|gb|EGB17077.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
          Length = 347

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/326 (39%), Positives = 205/326 (62%), Gaps = 8/326 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        ++  Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L      
Sbjct: 1   MAEKIITTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLGSDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ + AE + L+ +D+  V F   Y+E + EP V P + PNLL NG  GIAVGM+TSI
Sbjct: 121 EARLEKFAEEVYLKDLDK-TVPFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A IDNPE + ++LL+ + GPDFPTGGII  ++  ++  Y  G G  +
Sbjct: 180 PPHNLGEVVDTVMAYIDNPECTTKELLDILHGPDFPTGGIIA-NKSDLLNIYETGSGRIK 238

Query: 252 VRARWCVE--EVGRGSWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIRDESA 306
           +RA+  VE  +       ++++EIPY +     ++ +  IA+L+ +K++  + DI ++S 
Sbjct: 239 LRAKLEVELGKRRVDKDKLIISEIPYTMIGAGINKCLVDIADLVESKKLTDVVDISNQSN 298

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFML 332
           ++   ++    +  D + +   ++  
Sbjct: 299 KEGIRIVLELKKDADIEKIKNILYKK 324


>gi|330939645|gb|EGH42950.1| DNA gyrase subunit A [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 194

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/191 (53%), Positives = 142/191 (74%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAA 203
            HN+ E+ +  
Sbjct: 184 PHNLGEVIDGC 194


>gi|312275244|gb|ADQ57972.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/356 (44%), Positives = 230/356 (64%), Gaps = 2/356 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYRLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I++ +I+IE+L+++I GPDFPT   I+  R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIEDEQITIEELMQHIPGPDFPTAA-IINGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D S +    ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDH-GQPKIFNLKQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
           I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN      
Sbjct: 299 IIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADE 354


>gi|284803502|emb|CBJ16551.2| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 262

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/263 (55%), Positives = 197/263 (74%), Gaps = 1/263 (0%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  
Sbjct: 1   DGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNY 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV
Sbjct: 61  RYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGAEREPVV 120

Query: 168 FPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFP 227
            PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+EYI GPDFP
Sbjct: 121 MPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFP 180

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           T G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA
Sbjct: 181 TAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIA 239

Query: 288 ELIIAKRIPLLEDIRDESAEDVR 310
           +L+  K+I  + D+RDES  +  
Sbjct: 240 DLVRDKKIEGITDLRDESDRNGM 262


>gi|144954320|gb|ABP04236.1| gyrase alpha subunit [Yersinia pseudotuberculosis]
          Length = 188

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/188 (55%), Positives = 141/188 (75%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+
Sbjct: 61  VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLS 180

Query: 198 EICEAALA 205
           E+ +  LA
Sbjct: 181 EVIDGCLA 188


>gi|312275250|gb|ADQ57975.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275256|gb|ADQ57978.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275260|gb|ADQ57980.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275262|gb|ADQ57981.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275264|gb|ADQ57982.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275266|gb|ADQ57983.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275270|gb|ADQ57985.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275282|gb|ADQ57991.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275284|gb|ADQ57992.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/356 (44%), Positives = 230/356 (64%), Gaps = 2/356 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT   I+  R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAA-IINGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D S +    ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDH-GQPKIFNLKQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
           I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN      
Sbjct: 299 IIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADE 354


>gi|312275274|gb|ADQ57987.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275278|gb|ADQ57989.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/356 (44%), Positives = 230/356 (64%), Gaps = 2/356 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT   I+  R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAA-IINGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D S +    ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDH-GQPKIFNLKQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
           I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN      
Sbjct: 299 IIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADE 354


>gi|13810769|gb|AAK40029.1|AF272019_1 DNA gyrase subunit A [Bacillus mojavensis]
          Length = 260

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/261 (55%), Positives = 197/261 (75%), Gaps = 1/261 (0%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F 
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKI
Sbjct: 181 PTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKI 239

Query: 287 AELIIAKRIPLLEDIRDESAE 307
           A+L+  K+I  + D+RDES  
Sbjct: 240 ADLVRDKKIEGITDLRDESDR 260


>gi|312275246|gb|ADQ57973.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275258|gb|ADQ57979.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275272|gb|ADQ57986.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275276|gb|ADQ57988.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275280|gb|ADQ57990.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/356 (44%), Positives = 230/356 (64%), Gaps = 2/356 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDYAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT   I+  R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAA-IINGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D S +    ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDH-GQPKIFNLKQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
           I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN      
Sbjct: 299 IIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADE 354


>gi|3548918|gb|AAC68575.1| DNA gyrase A [Providencia stuartii]
          Length = 196

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 107/194 (55%), Positives = 143/194 (73%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE RM 
Sbjct: 61  IVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRMA 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPHNLG 180

Query: 198 EICEAALALIDNPE 211
           E+    LA ID+ +
Sbjct: 181 EVISGCLAYIDDED 194


>gi|317498961|ref|ZP_07957244.1| topoisomerase IV [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893794|gb|EFV15993.1| topoisomerase IV [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 323

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/315 (40%), Positives = 195/315 (61%), Gaps = 7/315 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E++        +++ Y+ YA+S I  RA+PD RDG KPV RR++++M E+GL +    
Sbjct: 1   MSEHIIKAEFSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYSMDELGLRYDRPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y+SLV ++Q F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYESLVVMSQDFKKGVPLVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ ++ +   L  +D++ VDF   ++E + EP V P K PNLL NG  GIAVGM TSI
Sbjct: 121 EARLQKITQEAYLADLDKNVVDFVSNFDETEKEPEVLPVKVPNLLVNGADGIAVGMTTSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +    I+ E+L+EYI GPDFPTGG +V +++ ++  Y  G G  +
Sbjct: 181 PPHNLGEVVDAVKAYMRKESITNEELMEYIEGPDFPTGG-LVINKKDLLNIYSSGTGKLK 239

Query: 252 VRARWCVEEVGRGSW--CIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +   E   +      +V++EIPY +     S+ +     LI  K    + DI +ES+
Sbjct: 240 LRGKVTFEPAKKRGEKDKLVISEIPYTMIGNNISKFLSDTVALIENKVTTDILDISNESS 299

Query: 307 EDVRIVLFPKNRSLD 321
           +D   ++    +  D
Sbjct: 300 KDGIRIVLELRKGAD 314


>gi|297519073|ref|ZP_06937459.1| DNA topoisomerase IV subunit A [Escherichia coli OP50]
          Length = 248

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 117/248 (47%), Positives = 172/248 (69%), Gaps = 1/248 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVE 259
           +RA W  E
Sbjct: 241 MRAVWKKE 248


>gi|312275268|gb|ADQ57984.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 158/356 (44%), Positives = 230/356 (64%), Gaps = 2/356 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT   I+  R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAA-IINGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KR+  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRVEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D S +    ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDH-GQPKIFNLKQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
           I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN      
Sbjct: 299 IIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNFKTADE 354


>gi|312275248|gb|ADQ57974.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 159/356 (44%), Positives = 229/356 (64%), Gaps = 2/356 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT   I+  R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAA-IINGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D S +    ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDH-GQPKIFNLKQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
           I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN      
Sbjct: 299 IIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADE 354


>gi|4558480|gb|AAD22627.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 211

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 119/211 (56%), Positives = 164/211 (77%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+KKSA
Sbjct: 1   IELIDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD AAA RYTEARM
Sbjct: 61  RIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGAAAMRYTEARM 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++
Sbjct: 121 TILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSL 180

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFP 227
            E+ +  L L+D+ + S+E L+++I GPDFP
Sbjct: 181 NELVDGLLYLLDHKDASLEDLMQFIKGPDFP 211


>gi|199612847|gb|ACH91611.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 228

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 128/229 (55%), Positives = 172/229 (75%), Gaps = 1/229 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ +
Sbjct: 121 DNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G
Sbjct: 181 ELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSG 228


>gi|218515928|ref|ZP_03512768.1| DNA topoisomerase IV subunit A [Rhizobium etli 8C-3]
          Length = 399

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 277/394 (70%), Positives = 346/394 (87%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G +    F+K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGD
Sbjct: 1   GAETDIGFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P  FPNLLANG+SGIA
Sbjct: 61  SPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMATSIPSHN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR
Sbjct: 121 VGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYR 180

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRGGFRVRA+W  E++GRG + IVVTEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDE
Sbjct: 181 TGRGGFRVRAKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDE 240

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SAED+RIVL PK+R++DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEW
Sbjct: 241 SAEDIRIVLVPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEW 300

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L HRREVL RRS FR+ AID+R+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R+ LT
Sbjct: 301 LDHRREVLQRRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARWDLT 360

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           +NQV+AILN+RLR+LRKLEE++I+ E D L  EK
Sbjct: 361 DNQVEAILNMRLRALRKLEEFEIRKEFDELTKEK 394


>gi|308447920|ref|XP_003087560.1| hypothetical protein CRE_22752 [Caenorhabditis remanei]
 gi|308254760|gb|EFO98712.1| hypothetical protein CRE_22752 [Caenorhabditis remanei]
          Length = 664

 Score =  366 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 97/191 (50%), Positives = 139/191 (72%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A
Sbjct: 1   MSVSEIRPIAIEDELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM ++   +L  +++D V++ D Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMRKLTHEMLADLEKDTVEWEDNYDGSERIPQVMPTRIPNLLINGVTGIAVGMATNM 180

Query: 192 PSHNVQEICEA 202
             HN+ E+  A
Sbjct: 181 APHNMTEVVNA 191



 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 52/169 (30%), Gaps = 28/169 (16%)

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLL 671
            + + ++ G    VE  +       G   +++  E+ +  V    G+  + +     K +
Sbjct: 389 YVFMATASGTVKRVELEQFGNVRSNGLRAIELKEEDTLIGVAITDGEQQIMLFSNEGKAI 448

Query: 672 IFSIDQIPEMSR-GKGVRLQS--YKDGGISD------------------------VICFK 704
            FS      M R  KGVR            +                        V    
Sbjct: 449 RFSETDARVMGRTAKGVRGMRVALAAAQTEEDVEVDVDSDDEDTADSNTNVVSRIVSLVV 508

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + E    + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 509 VPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGA 557



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVT 657
            IV+  V   T ++L  S+ G        +     R GK  + + + E   ++   V + 
Sbjct: 502 RIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAID 561

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
               + ++ +   L+     ++    R  +GVRL   
Sbjct: 562 ESKELMLISDGGTLVRTRASEVARTGRNAQGVRLIRL 598



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 7/145 (4%)

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
                 +P   +    G    +   +  ++  ++V A++      +L VS  G A     
Sbjct: 155 QVMPTRIPNLLINGVTGIAVGMATNMAPHNMTEVVNAYLIPEEQVVLTVSKTGYAKTQPL 214

Query: 629 SEIIANTR--KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG- 684
           S+  A  R  +GK+   +  ++ ++ ++  +    V       K+    + ++P+ SRG 
Sbjct: 215 SDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHATVLCFTNVGKVYRLRVFEVPQASRGA 274

Query: 685 KG---VRLQSYKDGGISDVICFKIC 706
           KG   V L           I   I 
Sbjct: 275 KGRPMVNLLPLDAEETITAILPVID 299



 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 686 GVRLQ------SYKDGGISDVI-CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           GV         +     +++V+  + I E    +  +   Y +++        +RGG G 
Sbjct: 168 GVTGIAVGMATNMAPHNMTEVVNAYLIPEEQVVLTVSKTGYAKTQPLSDYAAQRRGGRGK 227


>gi|307069700|ref|YP_003878177.1| DNA gyrase subunit A [Candidatus Zinderia insecticola CARI]
 gi|306482960|gb|ADM89831.1| DNA gyrase A subunit [Candidatus Zinderia insecticola CARI]
          Length = 511

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 137/390 (35%), Positives = 245/390 (62%), Gaps = 3/390 (0%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   Y+ YA++ I  RA+PD+ DG KPVHRRI++ M ++  ++   F K ARIVGEV+GK
Sbjct: 1   MSNSYINYAINVISNRALPDIIDGLKPVHRRILYTMYKIKNNYKNNFIKCARIVGEVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD+LVR+AQ F  +Y LI GQGNFG+IDGD+AAA RYTE ++ +++     
Sbjct: 61  YHPHGDNSIYDALVRMAQNFSLKYTLIKGQGNFGSIDGDNAAAMRYTECKLNKISNEFFH 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V F + Y+ ++ EP+V P + PNLL NG+ GIAVGM+T+IP HN  +    A+ 
Sbjct: 121 DINKNTVKFINNYDNKEKEPLVLPCRIPNLLINGSYGIAVGMSTNIPPHNFTDSINTAIY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+   E  I+ L++ +  PDFPTGG I++    +  +Y  G+G   + +++ + E     
Sbjct: 181 LLLFSECKIKDLIKILKAPDFPTGGNIIK-ISKLHNAYYYGKGSVTINSKF-IFEKINKK 238

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TEIPYQ+ K +++E+I +LI  K+I  + +++DES +    ++    ++L+ + +
Sbjct: 239 TNIIITEIPYQINKKKILEQIIKLIKNKKINFINNLKDESNKLGIRIVIELKKNLNKNKI 298

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           ++ +F  + ++    +N+  L    +P+ + L  IL  ++ +R++++ ++  F ++ + +
Sbjct: 299 LKILFKKTSLQHTININIIALIK-NIPKKLNLKKILIYFIKYRKKLIIKKLKFILKKLKK 357

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
           +  +L+G ++   NI++ I I++       
Sbjct: 358 KKYLLEGFVVVINNINKFIKIVKKSKNNIE 387


>gi|229815926|ref|ZP_04446249.1| hypothetical protein COLINT_02981 [Collinsella intestinalis DSM
           13280]
 gi|229808479|gb|EEP44258.1| hypothetical protein COLINT_02981 [Collinsella intestinalis DSM
           13280]
          Length = 746

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 185/679 (27%), Positives = 323/679 (47%), Gaps = 27/679 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +++   +   V A  +   LE  Y+ YA+ST   RA P++ DGFKP HR++++ M +MGL
Sbjct: 17  TDNVIGLHSEVTAQPITETLETNYMPYAMSTNVSRAFPEI-DGFKPSHRKLLYTMYKMGL 75

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFGNID-GD 124
             G   +KSA IVG+ + KL+PHGD ++Y+++VRLA        P +  +GNFG    GD
Sbjct: 76  LKGER-QKSANIVGQTM-KLNPHGDAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGD 133

Query: 125 -SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
            + AA RYTEA+++ +   I + +D+D VDF D+Y+    EP + P+ FPN+L +   GI
Sbjct: 134 LTYAASRYTEAKLSPICAEIFKDIDKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGI 193

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
            V MA+ I   N+ E+C A +  +++P   + +   Y+  PDF TGG I+  RE +    
Sbjct: 194 GVAMASDICGFNLNEVCTATMHFLEDPSCDLLE---YMPMPDFSTGGEIIYRREEMERII 250

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             G G F++R+RW      R    I V EIPY  +   +I++I +L    ++  + DIRD
Sbjct: 251 ETGLGSFQIRSRWRWVPEER---IIEVYEIPYTTKTDIIIDRIIKLSKEGKVREIADIRD 307

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           E+      +     R +DP+ LM  ++  + ++  F  N NVL     P+VM +  IL E
Sbjct: 308 ETDLSGLRIAIDLKRGVDPEKLMAKLYRTTTLQDSFSCNFNVLVD-GYPRVMGVRQILHE 366

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEI---LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           W+A R +   RR +F +     R+ +   L+ +L+       II   + E +  P ++  
Sbjct: 367 WVAWRIQSTRRRVNFDLGKKSERLHLLHGLEAILLDIDKAIAIIRGTKLEAEVVPNLMRG 426

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F + E Q + +  L+LR++ +        ++  L AE  +++ +L+S       I  E+ 
Sbjct: 427 FDIDETQAEFVAELKLRNINEEYILNRTKDIAKLEAEIAELEEILSSEDNIKKVIRDELA 486

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
            V + +        RRT   E          +  +E+ P+T+++S  G+++ +    +  
Sbjct: 487 AVNKKYVMP-----RRTGRIE-PSDVIEVSLEPEVEEYPVTIMLSREGYLKKMTDRVLRK 540

Query: 541 SALHFKEGDSLKIALHAHTTDR-ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           +A    +                +L+ +   + Y          +       L  DL  +
Sbjct: 541 AAELKYKDGDEPFIEFPSANTHELLVFTNKSQVYKCKVAAFEDTKSAQLGSYLATDLEMD 600

Query: 600 QDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            D    +V D       +L V   G A  V  +  +  T + +    +    K+     +
Sbjct: 601 PDESVIWVIDPEDYKADVLFVFENGRAVRVALAGYVTKTNRKRLKNAIYGGSKLLYAQVL 660

Query: 657 TGD-HVAVVGENRKLLIFS 674
             D  +A+V  + +L+ F+
Sbjct: 661 KEDRDIALVSSDYRLMNFN 679


>gi|91093495|gb|ABE11578.1| GyrA [Escherichia coli]
          Length = 211

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 113/205 (55%), Positives = 155/205 (75%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKS
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEY 220
           + E+    LA ID+ +ISIE L+E+
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEH 211


>gi|3548916|gb|AAC68574.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 196

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 106/194 (54%), Positives = 145/194 (74%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR
Sbjct: 1   TPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 180

Query: 198 EICEAALALIDNPE 211
           E+    LA +D+ +
Sbjct: 181 EVINGCLAYVDDED 194


>gi|3548908|gb|AAC68570.1| DNA gyrase A [Escherichia coli DSM 30083]
          Length = 196

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 107/194 (55%), Positives = 146/194 (75%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 198 EICEAALALIDNPE 211
           E+    LA ID+ +
Sbjct: 181 EVINGCLAYIDDED 194


>gi|3548906|gb|AAC68569.1| DNA gyrase A [Citrobacter freundii]
          Length = 196

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 107/194 (55%), Positives = 147/194 (75%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+
Sbjct: 61  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 198 EICEAALALIDNPE 211
           E+    LA ID+ +
Sbjct: 181 EVINGCLAYIDDED 194


>gi|213618739|ref|ZP_03372565.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 199

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 107/193 (55%), Positives = 145/193 (75%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKS
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALID 208
           + E+    LA ID
Sbjct: 187 LTEVINGCLAYID 199


>gi|3548914|gb|AAC68573.1| DNA gyrase A [Klebsiella oxytoca]
          Length = 196

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 106/194 (54%), Positives = 147/194 (75%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+
Sbjct: 61  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 198 EICEAALALIDNPE 211
           E+    LA ++N +
Sbjct: 181 EVINGCLAYVENED 194


>gi|3548912|gb|AAC68572.1| DNA gyrase A [Enterobacter cloacae]
          Length = 196

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 107/194 (55%), Positives = 146/194 (75%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNIT 180

Query: 198 EICEAALALIDNPE 211
           E+    LA ID+ +
Sbjct: 181 EVINGCLAYIDDED 194


>gi|462225|sp|P34030|GYRA_SPICI RecName: Full=DNA gyrase subunit A
 gi|49349|emb|CAA79524.1| DNA gyrase subunit A [Spiroplasma citri]
 gi|745459|prf||2016285D DNA gyrase:SUBUNIT=A
          Length = 227

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 113/223 (50%), Positives = 157/223 (70%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            N     +  ++ + +   ++  +L YA+S I  RAIPD+RDG KPVHRRII+AM ++ +
Sbjct: 5   ENDGYDYDGKIRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKM 64

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
            +    KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG++DGD  
Sbjct: 65  TYEKQHKKSARIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPP 124

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEA+M+++A  I++ ++++   F D Y+  + EP   P  FPNLL NG SGIAVG
Sbjct: 125 AAMRYTEAKMSKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVG 184

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTG 229
           MAT+IP HN+ E+ +  +A+  NPEI+  +L++ I GPDFPTG
Sbjct: 185 MATNIPPHNLNEVIDGVIAVTKNPEITTVELMKIIKGPDFPTG 227


>gi|210630763|ref|ZP_03296587.1| hypothetical protein COLSTE_00472 [Collinsella stercoris DSM 13279]
 gi|210160359|gb|EEA91330.1| hypothetical protein COLSTE_00472 [Collinsella stercoris DSM 13279]
          Length = 746

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 190/679 (27%), Positives = 328/679 (48%), Gaps = 27/679 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +++   +   V A  +   LE  Y+ YA+ST   RA P++ DGFKP HR++++ M +MGL
Sbjct: 17  ADNVIGLHSEVTAQPITKTLETNYMPYAMSTNVSRAFPEI-DGFKPSHRKLLYTMYKMGL 75

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFGNID-GD 124
             G   +KSA IVG+ + KL+PHGD ++Y+++VRLA        P +  +GNFG    GD
Sbjct: 76  LKGER-QKSANIVGQTM-KLNPHGDAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGD 133

Query: 125 -SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
            + AA RYTEA+++ +   I + +D+D VDF D+Y+    EP + P+ FPN+L +   GI
Sbjct: 134 LTYAASRYTEAKLSPICAEIFKDIDKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGI 193

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
            V MA+ I   N+ E+C A +  +++P   + +   Y+  PDF TGG I+  RE +    
Sbjct: 194 GVAMASDICGFNLNEVCTATMHYLEDPSCDLLE---YMPMPDFSTGGEIIYRREEMERII 250

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             G G F++R+RW      R    I V EIPY  +   +I++I +L    ++  + DIRD
Sbjct: 251 ETGLGSFQIRSRWRWVPEER---IIEVYEIPYTTKTDVIIDRIVKLSKEGKVREIADIRD 307

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           E+      +     R +DP+ LM  ++  + ++  F  N NVL     P+VM +  IL E
Sbjct: 308 ETDLSGLRIAIDLKRGVDPEKLMAKLYRTTTLQDSFSCNFNVLVD-GYPRVMGVRQILHE 366

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEI---LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           W+A R +   RR +F +     R+ +   L+ +L+       II   + E +  P ++  
Sbjct: 367 WVAWRVQSTRRRVNFDLGKKSERLHLLHGLEAILLDIDKAIAIIRGTKLEAEVVPNLMKG 426

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F + E Q + +  L+LR++ +        ++  L AE  +++ +L+S       I  E+ 
Sbjct: 427 FDIDETQAEFVAELKLRNINEEYILNRTKDIAKLEAEIAELEEILSSEDNIKKVIRDELA 486

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS-VD 539
            V + +        RRT   E          +  IE+ P+T+++S  G+++ +       
Sbjct: 487 AVNKKYVMP-----RRTGRIE-PSDVIEVSLEPEIEEYPVTIMLSREGYLKKMTDRVLKK 540

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +AL +K+GD   I   +  T  +L+ +   + Y          +       L  DL   
Sbjct: 541 AAALKYKDGDEPFIEFPSANTHELLVFTNKSQVYKCKVAAFEDTKSAQLGSYLPTDLEME 600

Query: 600 QDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            D    +  D       +L +   G A  V  +  +  T + +    +    K+     +
Sbjct: 601 PDESVIWAIDPEDYKADVLFIFENGRAVRVALAGYVTKTNRKRLKNAIYGGSKLLYAQVL 660

Query: 657 TGD-HVAVVGENRKLLIFS 674
             D  +A+V  + +L+ F+
Sbjct: 661 KEDRDIALVSSDYRLMSFN 679


>gi|91093371|gb|ABE11566.1| GyrA [Escherichia coli]
 gi|91093393|gb|ABE11567.1| GyrA [Escherichia coli]
 gi|91093397|gb|ABE11568.1| GyrA [Escherichia coli]
 gi|91093415|gb|ABE11569.1| GyrA [Escherichia coli]
 gi|91093421|gb|ABE11570.1| GyrA [Escherichia coli]
 gi|91093439|gb|ABE11571.1| GyrA [Escherichia coli]
 gi|91093441|gb|ABE11572.1| GyrA [Escherichia coli]
 gi|91093447|gb|ABE11573.1| GyrA [Escherichia coli]
 gi|91093455|gb|ABE11574.1| GyrA [Escherichia coli]
 gi|91093483|gb|ABE11575.1| GyrA [Escherichia coli]
 gi|91093491|gb|ABE11576.1| GyrA [Escherichia coli]
 gi|91093493|gb|ABE11577.1| GyrA [Escherichia coli]
 gi|91093497|gb|ABE11579.1| GyrA [Escherichia coli]
          Length = 211

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 112/205 (54%), Positives = 155/205 (75%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKS
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEY 220
           + E+    LA ID+ +ISIE L+E+
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEH 211


>gi|254993570|ref|ZP_05275760.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J2-064]
          Length = 281

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 121/285 (42%), Positives = 191/285 (67%), Gaps = 5/285 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTGGII    + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQG-IDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL 
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELR 280


>gi|10717007|gb|AAG22004.1|AF282315_1 gyrase subunit A [Yersinia pseudotuberculosis]
          Length = 178

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 100/178 (56%), Positives = 135/178 (75%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 1   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 121 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 178


>gi|46204725|ref|ZP_00049578.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 260

 Score =  361 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 118/241 (48%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               V E +  V ++  +E  +L YA S I  RA+PD RDG KPV RRI++ M++MGL  
Sbjct: 11  DPAEVNEKIVDVDVQAEMETSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMADMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A  KSAR+VGEV+GKLHPHGD ++YD+LVRL+Q F  R PL+ G GNFG +D D  AA
Sbjct: 71  DRAHVKSARVVGEVMGKLHPHGDAAIYDALVRLSQDFSLRLPLVDGHGNFGTLD-DGPAA 129

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   +  +  G+DED VDF   Y+ +  +P V P+  PNLL NG SGIAVGMA
Sbjct: 130 SRYTEARLAPPSLAMTAGLDEDVVDFVPNYDNKLQQPEVLPAAIPNLLVNGASGIAVGMA 189

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++  HN+ E+  AA  L+ +P+  +E L+ ++ GPD PTGG IV   + + ++YR GRG
Sbjct: 190 TNMAPHNLVEVVAAARHLVAHPDADLEALMRFVPGPDLPTGGKIV-GLDGVRDAYRTGRG 248

Query: 249 G 249
            
Sbjct: 249 R 249


>gi|3548910|gb|AAC68571.1| DNA gyrase A [Enterobacter aerogenes]
          Length = 196

 Score =  361 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 107/194 (55%), Positives = 147/194 (75%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR
Sbjct: 1   TRVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+
Sbjct: 61  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 198 EICEAALALIDNPE 211
           E+    LA +DN +
Sbjct: 181 EVINGCLAYVDNED 194


>gi|159468217|ref|XP_001692279.1| hypothetical protein CHLREDRAFT_115934 [Chlamydomonas reinhardtii]
 gi|158278465|gb|EDP04229.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 315

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 136/304 (44%), Positives = 187/304 (61%), Gaps = 3/304 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM E+GL     +KK AR+VGEV+GK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMHELGLVATKPYKKCARVVGEVLGKFHPHGDNAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQGVDEDAVD 153
           YDSLVRLAQ F  R PL+ G GNFG++D D AAA RYTE R+   AE L+L  +    V+
Sbjct: 61  YDSLVRLAQDFSMRVPLVQGHGNFGSVDADPAAAMRYTECRLAPAAEGLLLGDLGAATVE 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +RDT++    EPVV P+  PNLL NG+ GIAVG+A++IP HN+ E+  A   LI NPE++
Sbjct: 121 WRDTFDASQQEPVVLPAVVPNLLVNGSQGIAVGLASTIPPHNLGEVVAALRRLIANPEVT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV-GRGSWCIVVTE 272
            E+L+E + GPD+PTGG ++   E ++ +YR GRG           E    G   IV+TE
Sbjct: 181 TEELMECVRGPDYPTGGQLITGPE-LLAAYRTGRGSAAAEKLAQAAETADGGPELIVITE 239

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PY V K  +               + D+RDES      V+       + +LL+  +F  
Sbjct: 240 LPYSVCKVGVKPLTTTCQRTAHCAGVADVRDESDRTGMRVVVEVKMGWNAELLLAQLFKD 299

Query: 333 SDME 336
           + ++
Sbjct: 300 TRLQ 303


>gi|139438116|ref|ZP_01771669.1| Hypothetical protein COLAER_00657 [Collinsella aerofaciens ATCC
           25986]
 gi|133776313|gb|EBA40133.1| Hypothetical protein COLAER_00657 [Collinsella aerofaciens ATCC
           25986]
          Length = 706

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 186/655 (28%), Positives = 319/655 (48%), Gaps = 27/655 (4%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           + YA+S    RA P++ DGFKP HR++++ M +MGL  G   +KSA IVG+ + KL+PHG
Sbjct: 1   MPYAMSVNVSRAFPEI-DGFKPSHRKLLYTMYKMGLLKGER-QKSANIVGQTM-KLNPHG 57

Query: 91  DQSVYDSLVRLAQ-PFVQRYPLISGQGNFGNID-GD-SAAAYRYTEARMTQVAELILQGV 147
           D ++Y+++VRLA        P +  +GNFG    GD S AA RYTEA+++ ++  I + +
Sbjct: 58  DAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGDLSYAASRYTEAKLSPISAEIFKDI 117

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D VDF D+Y+    EP + P+ FPN+L +   GI V MA+ I   N+ E+C A +  +
Sbjct: 118 DKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGIGVAMASDICGFNLNEVCTATMHYL 177

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            +P+  + +   Y+  PDF TGG I+  RE + +    G G F++R+RW      R    
Sbjct: 178 QDPDCDLLE---YMPMPDFSTGGEIIYRREEMEKIIETGLGSFQIRSRWRWIPEER---I 231

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           I V EIPY  +   +IE+I +L    ++  + DIRDE+      +     R +DPD LM 
Sbjct: 232 IEVYEIPYTTKTDVIIERIVKLSKEGKVKEIADIRDETDLSGLRIAIDLKRGVDPDKLMA 291

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  + ++  F  N NVL     P+VM +  IL EW+  R E   RR +F +     R+
Sbjct: 292 KLYRSTTLQDSFSCNFNVLVD-GYPRVMGVRQILHEWVKWRIESTRRRINFDLGKKSERL 350

Query: 388 EI---LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            +   L+ +L+       II   + E +  P ++  F + E Q + +  L+LR++ +   
Sbjct: 351 HLLHGLEAILLDIDKAIAIIRGTKLEAEVVPNLMKGFDIDETQAEFVAELKLRNINEEYI 410

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
                ++  L +E  +++ +L+S +     I+ E+  V + +        RRT   E   
Sbjct: 411 LNRTKDIAKLESEIAELEEILSSEENIKKVISDELAAVNKKYVMP-----RRTGRIE-PH 464

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHS-VDLSALHFKEGDSLKIALHAHTTDRI 563
                  +  +E+ P+T+++S  G+++ +        + L +K+GD   I   +  T  +
Sbjct: 465 EVIEVSLEPEVEEYPVTIMLSRDGYLKKMTDRVLKKATTLKYKDGDKPFIEFPSSNTHEL 524

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSK 620
           L+ +   + Y          +       L  DL    D    +V D       +L V   
Sbjct: 525 LVFTNKSQVYKCKVAAFEDTKSAQLGSYLPTDLEMEPDESVIWVIDPEDYKADVLFVFEN 584

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           G    V  S  +  T + +    +    K+     +  D  +A+V  + +L+ F+
Sbjct: 585 GRVVRVALSGYVTKTNRKRLKNAIYGGSKLLYAQVLKEDRDIALVSSDYRLMNFN 639


>gi|10717005|gb|AAG22003.1|AF282314_1 gyrase subunit A [Yersinia pestis]
          Length = 177

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 100/177 (56%), Positives = 134/177 (75%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 121 KIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 177


>gi|260748873|gb|ACX48753.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 117/198 (59%), Positives = 155/198 (78%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 211 EISIEKLLEYIIGPDFPT 228
           +ISIE L+E+I GPDFPT
Sbjct: 181 DISIEGLMEHIPGPDFPT 198


>gi|309807859|ref|ZP_07701791.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 01V1-a]
 gi|308168961|gb|EFO71047.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 01V1-a]
          Length = 662

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 154/608 (25%), Positives = 288/608 (47%), Gaps = 28/608 (4%)

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            +PVV P++ P LL NG SGIAVGM T+IP HN+ EI      L++NP++S+ +L+  I 
Sbjct: 3   MKPVVLPARVPALLVNGVSGIAVGMTTNIPPHNLSEIISGLHMLMENPDVSVRELMTAIT 62

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
           GPDFPTGG I+  R  I+ +Y+ G+G   VRA+  ++    G   I+++EIPY V K+ L
Sbjct: 63  GPDFPTGG-IIMGRSGILRAYKTGKGNIVVRAKTNIDTEKSGRERIIISEIPYMVNKAEL 121

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           ++KIA+L   K +  +  I+DES +    +     R     +++ ++F  + +++ F +N
Sbjct: 122 VKKIADLARDKVVDGITGIQDESDQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVN 181

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           M  +     P V+ L  IL+ +LAH+  ++ RR+ + ++  + R  I++GL IA  +IDE
Sbjct: 182 MVAIVD-GSPHVLNLKQILQYYLAHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDE 240

Query: 403 IIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           II IIR           +++RF L + Q  AIL++RL  L  LE  +++ E  +LL + +
Sbjct: 241 IIKIIRGSKNSDIAKDQLITRFGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKID 300

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               +L   ++    I  E+ ++++ F        RRT   +      +   + +IEK+ 
Sbjct: 301 DYKDILAKPERVDQIIFNELLDIQKRFGDE-----RRTEISD--SEIISIDDEDLIEKQN 353

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHF--------KEGDSLKIALHAHTTDRILLLSTDGK 571
           + + +++ G+I+ + +    +             +  D +   ++ +T D +L  +  GK
Sbjct: 354 VLLTLTHNGYIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGK 413

Query: 572 AYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIV 626
            Y+  +  +       +   I  L+ L   + +         D+   L+ V+  G    +
Sbjct: 414 VYSKKSYEIPEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRI 473

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-G 684
             SE     R G   L +   +++  V+   G   + +       +IF+ +++  M R  
Sbjct: 474 SISEFTNIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVA 533

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            GVR    +      V    + +    +  + + Y +        +  RG +G       
Sbjct: 534 SGVRGIKLRANDYV-VGSSIVDDHSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVT 592

Query: 745 PRSGKFLS 752
            ++G  + 
Sbjct: 593 EKNGPLVG 600



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-M 650
           I L  N  +V + + D   ++LV+S KG       SE    +R   G     V+ +   +
Sbjct: 539 IKLRANDYVVGSSIVDDHSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPL 598

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKICE 707
             V  V G + + ++ +   ++   +D + +  R   GVRL     G  ++ +   K  +
Sbjct: 599 VGVTVVDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 658

Query: 708 GLTW 711
               
Sbjct: 659 NSEI 662


>gi|23429751|gb|AAN23862.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 108/195 (55%), Positives = 145/195 (74%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +
Sbjct: 61  PHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ VD+   Y+  +  P V P+K PNLL NG+ GIAVGMAT+IP HN+ EI     ALI
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSPGIAVGMATNIPPHNLTEIVNGCRALI 180

Query: 208 DNPEISIEKLLEYII 222
           +N  ++I++L+ YI 
Sbjct: 181 ENGNLTIDELMTYIT 195


>gi|14994223|gb|AAK73347.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 109/195 (55%), Positives = 148/195 (75%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALI 180

Query: 208 DNPEISIEKLLEYII 222
           +N +++I++L+ YI 
Sbjct: 181 ENGDLTIDELMTYIT 195


>gi|23429763|gb|AAN23863.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 109/195 (55%), Positives = 146/195 (74%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VRL Q F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +
Sbjct: 61  PHGDSAVYDTIVRLVQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALI 180

Query: 208 DNPEISIEKLLEYII 222
           +N  ++I++L+ YI 
Sbjct: 181 ENGNLTIDELMTYIT 195


>gi|331668932|ref|ZP_08369780.1| DNA gyrase, A subunit [Escherichia coli TA271]
 gi|331064126|gb|EGI36037.1| DNA gyrase, A subunit [Escherichia coli TA271]
          Length = 717

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 178/631 (28%), Positives = 276/631 (43%), Gaps = 48/631 (7%)

Query: 168 FPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFP 227
            P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFP
Sbjct: 1   MPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP 60

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           T   I+  R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKI
Sbjct: 61  TAA-IINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKI 119

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           AEL+  KR+  +  +RDES +D   ++    R    ++++ +++  + ++  F +NM  L
Sbjct: 120 AELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL 179

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
                P++M L  I+  ++ HRREV+ RR+ F ++    R  IL+ L +A  NID II +
Sbjct: 180 -HHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIEL 238

Query: 407 IRNEDKPKP-------------------------------------VMVSRFSLTENQVD 429
           IR+   P                                       V    + LTE Q  
Sbjct: 239 IRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQ 298

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+  V+E F   
Sbjct: 299 AILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDK 358

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +               +       V         + +      SA   KE D
Sbjct: 359 RRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEED 418

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV 607
            +   L A+T D IL  S+ G+ Y++    L        G  I  L+ L  ++ I     
Sbjct: 419 FIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILP 478

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAV 663
              ++   K+ + ++ G       +E       GK  +K+   +++  V   +G D V +
Sbjct: 479 VTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVML 538

Query: 664 VGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
                K++ F    +  M     GVR     +G     +     +G   + +    Y + 
Sbjct: 539 FSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKR 597

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     R   G +  K   R+G  + +
Sbjct: 598 TAVAEYPTKSRATKGVISIKVTERNGLVVGA 628



 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 534 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 593

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 594 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 653

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 654 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 690


>gi|32261029|emb|CAD99012.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 120/213 (56%), Positives = 161/213 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIV
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M+++
Sbjct: 63  GAVIGRYHPHGDAAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
            +  L L+DN + S+E+++++I GPDFPTGGII
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGII 215


>gi|52843256|gb|AAU88057.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843258|gb|AAU88058.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843260|gb|AAU88059.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 115/198 (58%), Positives = 153/198 (77%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 209 NPEISIEKLLEYIIGPDF 226
           + +ISIE L+E+I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|260748871|gb|ACX48752.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 117/198 (59%), Positives = 155/198 (78%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 211 EISIEKLLEYIIGPDFPT 228
           +ISIE L+E+I GPDFPT
Sbjct: 181 DISIEGLMEHIPGPDFPT 198


>gi|68248472|gb|AAY88730.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 228

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 119/220 (54%), Positives = 165/220 (75%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
           H++ E+ +  L L+D+ + S+E+++++I GPDFPTGGII 
Sbjct: 188 HSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIY 227


>gi|32261026|emb|CAD99009.2| DNA gyrase subunit A [Campylobacter jejuni]
 gi|32261027|emb|CAD99010.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 120/213 (56%), Positives = 161/213 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIV
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M+++
Sbjct: 63  GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
            +  L L+DN + S+E+++++I GPDFPTGGII
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGII 215


>gi|14994221|gb|AAK73346.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 108/195 (55%), Positives = 147/195 (75%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ VD+   Y+  +  P V P+K PNLL NG+SG AVGMAT+IP HN+ EI    LALI
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALI 180

Query: 208 DNPEISIEKLLEYII 222
           +N + +I++L+ YI 
Sbjct: 181 ENGDRTIDELMTYIT 195


>gi|32261028|emb|CAD99011.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 119/213 (55%), Positives = 161/213 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIV
Sbjct: 3   VDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M+++
Sbjct: 63  GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
            +  L L+D+ + S+E+++++I GPDFPTGGII
Sbjct: 183 IDGLLYLLDSKDASLEEIMQFIKGPDFPTGGII 215


>gi|114224641|gb|ABI55205.1| DNA gyrase A [Shigella sonnei]
          Length = 200

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 117/200 (58%), Positives = 155/200 (77%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNITEVINGCLAYIDDE 180

Query: 211 EISIEKLLEYIIGPDFPTGG 230
           +ISIE L+E+I GPDFPT  
Sbjct: 181 DISIEGLMEHIPGPDFPTAE 200


>gi|4007020|emb|CAA77112.1| topoisomerase IV [Campylobacter jejuni]
          Length = 366

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 155/368 (42%), Positives = 247/368 (67%), Gaps = 9/368 (2%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP
Sbjct: 1   KPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 111 LISGQGNFG-NIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           L+ GQGN+  + D   S AA RYTE+R+++ +EL+L  +     D+   ++    EP + 
Sbjct: 61  LVDGQGNWRRSPDDPKSFAAMRYTESRLSKYSELLLSELGRGTADWVPNFDGTLQEPKML 120

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPT 228
           P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ALID P  ++++LL+ + GPD+PT
Sbjct: 121 PARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPRTTLDQLLDIVQGPDYPT 180

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
              I+ SR  I + Y  GRG  R+RA W  E+       +V++ +P QV  +R++E+IA 
Sbjct: 181 EAEIITSRAEIRKMYEKGRGSVRMRAVWKKED-----GAVVISALPQQVSGARVLEQIAA 235

Query: 289 LIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
            +    +P+++D+RDES  +   R+V+ P++  +D D +M  +   +++E  + + +N++
Sbjct: 236 QMRNNNVPMVDDLRDESDHEKPTRLVIVPRSNRVDIDQVMNHLLATTELEKSYRIKLNMI 295

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P V  L  IL EWL  RR+ + RR ++R++ + +R+ +L+G L+ +LNI+E+I I
Sbjct: 296 GLDGRPAVKNLLEILSEWLVLRRDTVRRRLNYRLEKVLKRLHMLEGFLVEFLNIEEVIDI 355

Query: 407 IRNEDKPK 414
           I NED+P 
Sbjct: 356 IHNEDEPN 363


>gi|52843262|gb|AAU88060.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843264|gb|AAU88061.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 115/198 (58%), Positives = 153/198 (77%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 209 NPEISIEKLLEYIIGPDF 226
           + +ISIE L+E+I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|257362206|gb|ACV53188.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 97/193 (50%), Positives = 137/193 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDVAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAA 203
           IP HN+ E+ +  
Sbjct: 182 IPPHNLNEVLDGC 194


>gi|32261030|emb|CAD99013.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 120/213 (56%), Positives = 161/213 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIV
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M+++
Sbjct: 63  GAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
            +  L L+DN + S+E+++++I GPDFPTGGII
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGII 215


>gi|260748875|gb|ACX48754.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 116/198 (58%), Positives = 155/198 (78%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 211 EISIEKLLEYIIGPDFPT 228
           +ISIE L+E+I GPDFPT
Sbjct: 181 DISIEGLMEHIPGPDFPT 198


>gi|257362181|gb|ACV53180.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 96/193 (49%), Positives = 137/193 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAA 203
           IP HN+ E+ +  
Sbjct: 182 IPPHNLNEVLDGC 194


>gi|32135167|emb|CAD99014.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 119/213 (55%), Positives = 161/213 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIV
Sbjct: 3   VDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M+++
Sbjct: 63  GAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
            +  L L+D+ + S+E+++++I GPDFPTGGII
Sbjct: 183 IDGLLYLLDSKDASLEEIMQFIKGPDFPTGGII 215


>gi|257362193|gb|ACV53184.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 97/193 (50%), Positives = 137/193 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAA 203
           IP HN+ E+ +  
Sbjct: 182 IPPHNLNEVLDGC 194


>gi|52843248|gb|AAU88053.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843252|gb|AAU88055.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  354 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 114/198 (57%), Positives = 152/198 (76%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDLAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 209 NPEISIEKLLEYIIGPDF 226
           + +ISIE L+E+I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|118132713|gb|ABK60209.1| DNA gyrase A [Shigella boydii]
          Length = 198

 Score =  354 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 113/198 (57%), Positives = 153/198 (77%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK 
Sbjct: 1   KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 60

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  
Sbjct: 61  HPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMAD 120

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 LEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAY 180

Query: 207 IDNPEISIEKLLEYIIGP 224
           ID+ +ISIE L+E+I GP
Sbjct: 181 IDDEDISIEGLMEHIPGP 198


>gi|319826936|gb|ADV74762.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 279

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 134/279 (48%), Positives = 200/279 (71%), Gaps = 1/279 (0%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GN
Sbjct: 1   LYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL 
Sbjct: 61  FGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLV 120

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R 
Sbjct: 121 NGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRS 179

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  
Sbjct: 180 GIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEG 239

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           + D+RDES      ++    R  + ++++ +++  + ++
Sbjct: 240 ITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 278


>gi|23429757|gb|AAN23864.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 108/195 (55%), Positives = 145/195 (74%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VR+AQ F  RY L  GQGNFG++DGDSAAA RYTE RM +++  +L  +
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLADGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ VD+   Y+  +  P V P+K PNLL NG+SG AVGMAT+IP HN+ EI    LALI
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALI 180

Query: 208 DNPEISIEKLLEYII 222
           +N + +I++L+ YI 
Sbjct: 181 ENGDRTIDELMTYIT 195


>gi|257362209|gb|ACV53189.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 97/193 (50%), Positives = 137/193 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAA 203
           IP HN+ E+ +  
Sbjct: 182 IPPHNLNEVLDGC 194


>gi|31745487|gb|AAP55217.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 183

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 102/183 (55%), Positives = 139/183 (75%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  DVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 201 EAA 203
              
Sbjct: 181 NGC 183


>gi|257362178|gb|ACV53179.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 96/193 (49%), Positives = 136/193 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAA 203
           IP HN+ E+ +  
Sbjct: 182 IPPHNLNEVLDGC 194


>gi|23429770|gb|AAN23865.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 107/195 (54%), Positives = 146/195 (74%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR++ A++E+G D+   +KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAVNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ VD+   Y+  +  P V P+K PNLL NG+SG AVGMAT+IP HN+ EI    LALI
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALI 180

Query: 208 DNPEISIEKLLEYII 222
           +N + +I++L+ YI 
Sbjct: 181 ENGDRTIDELMTYIT 195


>gi|257362190|gb|ACV53183.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 96/193 (49%), Positives = 136/193 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VI K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVISKYHPHGDVAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAA 203
           IP HN+ E+ +  
Sbjct: 182 IPPHNLNEVLDGC 194


>gi|257362184|gb|ACV53181.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 96/193 (49%), Positives = 136/193 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAA 203
           IP HN+ E+ +  
Sbjct: 182 IPPHNLNEVLDGC 194


>gi|257362196|gb|ACV53185.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 96/193 (49%), Positives = 136/193 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAA 203
           IP HN+ E+ +  
Sbjct: 182 IPPHNLNEVLDGC 194


>gi|52843250|gb|AAU88054.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843254|gb|AAU88056.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 114/198 (57%), Positives = 153/198 (77%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 209 NPEISIEKLLEYIIGPDF 226
           + +ISIE L+E+I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|153840091|ref|ZP_01992758.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149746311|gb|EDM57376.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 286

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 158/225 (70%), Gaps = 1/225 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
           AT IP HNV+E+ +A + LIDNP+  + ++++++ GPD+PT   I
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEI 226


>gi|13810765|gb|AAK40027.1|AF272017_1 DNA gyrase subunit A [Bacillus licheniformis]
          Length = 285

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 134/286 (46%), Positives = 203/286 (70%), Gaps = 1/286 (0%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +++G+     +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++
Sbjct: 1   NDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSV 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGDSAAA RYTEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +
Sbjct: 61  DGDSAAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAA 120

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP H + E+ +  LA+  NP+I++ +L+E I GPDFPT G ++  R  I +
Sbjct: 121 GIAVGMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAG-LILGRSGIRK 179

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+
Sbjct: 180 AYETGRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDL 239

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           RDES  +   ++    R  + ++L+ +++  + ++T F +N+  L 
Sbjct: 240 RDESDRNGMRIVIELRRDANANVLLNNLYKQTALQTSFGINLLALV 285


>gi|257362199|gb|ACV53186.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 96/193 (49%), Positives = 137/193 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAA 203
           IP HN+ E+ +  
Sbjct: 182 IPPHNLNEVLDGC 194


>gi|317133928|ref|YP_004089839.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
 gi|315450390|gb|ADU23953.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
          Length = 729

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 188/695 (27%), Positives = 346/695 (49%), Gaps = 28/695 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+++ + +   L E Y+ YA+S IK RA+P++ DGFKP HR++++ M +M L       
Sbjct: 17  DEHMRDIVVSEVLTENYMPYAMSVIKSRALPEI-DGFKPAHRKLLYTMYQMKLFDKK--T 73

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFG---NIDGDSAAAY 129
           K A IVG+ + + +PHGD S+Y++LVRL +       PLIS +GNFG   + D  + AAY
Sbjct: 74  KCANIVGQTM-QYNPHGDSSIYETLVRLTEDNESLLTPLISSKGNFGKHYSRDM-AYAAY 131

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA  T++A  + +G++++AVD  D ++    EPV+ P+ FPN+LA  T GIAVGMA+
Sbjct: 132 RYTEAGFTKIAAELFEGINKNAVDMADNFDATKKEPVLLPTSFPNILAMPTLGIAVGMAS 191

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +I S N++E+CEA +  I +P+  I      + GPDF TGG I+  R+ + + YR G+G 
Sbjct: 192 NIASFNLKELCEATIEYIKDPKTDILD---IMPGPDFSTGGDILFDRDEMDKIYRTGKGS 248

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VR+++ V++  R    I + EIPY      +IE +  L  +KRI  ++DIRD++ ++ 
Sbjct: 249 IVVRSKYTVDKKNR---RIEIREIPYSTTTEAIIENVISLCKSKRIMDIDDIRDDTDKNG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
            ++     RS DPD +M  ++ L+ ++  F  N  +L     P V+ + GIL EW+  R 
Sbjct: 306 LLITIEYKRSADPDEIMNKLYSLTPLQDTFSCNFTMLINNN-PVVLGVYGILDEWIKFRT 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           E + R  ++ ++   +++ +++GL           +II   + +    P ++  F + + 
Sbjct: 365 ECIKRELTYDLEIFRKKLHLMEGLQKILLNIDKAIKIIRGTKLDKDVIPNLMKGFDIDKT 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + I  +RLR++ +        E++ +  + +K +++++S K    QI  +++E+    
Sbjct: 425 QAEYITEIRLRNINEEWILDRTKEIEKIKEDIKKNETIISSDKALKKQIIKKLKEIAN-- 482

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K   +  R+TT     + +K T+ + +   +   ++  +    +   S   + +    K
Sbjct: 483 -KEDYIKPRKTTINTEVKVEKVTVIEEVKNYDVKIIISEHGYVKKVPTSTYKEDTEYKLK 541

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           + D +   + A     +L  +  G  Y     ++   +       +        D  T F
Sbjct: 542 DDDRILKIIDAQNIGEVLTFTDKGVVYKTKISDIEVCKAGEFGTFIRSAAEIPDDEKTVF 601

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
           +    D +  ++VV   G       +       + K      +  K      V  D ++ 
Sbjct: 602 ITATGDFSGNMIVVFENGKVAKFPLNVYETKQNRKKLINAFYTNVKPVAFYHVLEDVNIK 661

Query: 663 VVGENRKLLIFSID--QIPEMSRGKGVRLQSYKDG 695
           +  +  KLLIF+ +   +      +G ++      
Sbjct: 662 MKSDGGKLLIFNSEMINLKNSKTTQGTQVMKLPKE 696


>gi|110589971|gb|ABG77432.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 114/194 (58%), Positives = 152/194 (78%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEYIIGPDF 226
           SIE L+E+I GPDF
Sbjct: 181 SIEGLMEHIPGPDF 194


>gi|321116498|dbj|BAJ72201.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 194

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 96/194 (49%), Positives = 145/194 (74%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           +L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G
Sbjct: 1   NLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+GK HPHGD S+Y ++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A
Sbjct: 61  DVMGKYHPHGDSSIYAAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP HN+ E  
Sbjct: 121 LELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIPPHNLAESI 180

Query: 201 EAALALIDNPEISI 214
           +A   ++++P+ + 
Sbjct: 181 DAVKMVMEHPDCTT 194


>gi|118638612|gb|ABL09463.1| gyrase subunit A [Clostridium difficile]
          Length = 197

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 103/192 (53%), Positives = 150/192 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +V
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +  ++E   EP V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + LIDNPE S+
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 215 EKLLEYIIGPDF 226
           + L++++ GPDF
Sbjct: 181 DDLIKFVQGPDF 192


>gi|114224639|gb|ABI55204.1| DNA gyrase A [Shigella flexneri]
          Length = 196

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 114/196 (58%), Positives = 153/196 (78%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 211 EISIEKLLEYIIGPDF 226
           +ISIE L+E+I GPDF
Sbjct: 181 DISIEGLMEHIPGPDF 196


>gi|257362203|gb|ACV53187.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 96/193 (49%), Positives = 136/193 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAA 203
           IP HN+ E+ +  
Sbjct: 182 IPPHNLNEVLDGC 194


>gi|13810763|gb|AAK40026.1|AF272016_1 DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 290

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 140/288 (48%), Positives = 204/288 (70%), Gaps = 1/288 (0%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+++G+    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 1   MNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG 
Sbjct: 61  VDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGA 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP H + EI +  LA+ +N +I I++L+E+I GPDFPT G I+  R  I 
Sbjct: 121 AGIAVGMATNIPPHQLGEIIDGVLAVSENKDIPIQELMEFIPGPDFPTAGQIL-GRSGIR 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D
Sbjct: 180 KAYESGRGSITIRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITD 239

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
           +RDES  +   ++    R  +  +++ +++  + ++T F +N+  L  
Sbjct: 240 LRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVD 287


>gi|313611853|gb|EFR86319.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes FSL
           F2-208]
          Length = 207

 Score =  349 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 106/205 (51%), Positives = 153/205 (74%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIE 215
           IP+H++ E+ +  LAL  NPEI+I 
Sbjct: 183 IPTHHLGEVIDGVLALSHNPEITIR 207


>gi|257362187|gb|ACV53182.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 95/193 (49%), Positives = 136/193 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  
Sbjct: 2   SELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VI K HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVISKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAA 203
           IP HN+ E+ +  
Sbjct: 182 IPPHNLNEVLDGC 194


>gi|31745485|gb|AAP55216.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 177

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 101/176 (57%), Positives = 137/176 (77%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 HGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 176


>gi|110589967|gb|ABG77430.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 115/194 (59%), Positives = 152/194 (78%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEYIIGPDF 226
           SIE L+EYI GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|265679096|gb|ACY76267.1| DNA gyrase A [Mycobacterium chelonae]
          Length = 183

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 98/183 (53%), Positives = 133/183 (72%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTEAR+T +
Sbjct: 61  AETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT++P HN++E+
Sbjct: 121 AMEMLREIDEETVDFSPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 200 CEA 202
            EA
Sbjct: 181 AEA 183


>gi|265679090|gb|ACY76264.1| DNA gyrase A [Mycobacterium massiliense]
 gi|265679092|gb|ACY76265.1| DNA gyrase A [Mycobacterium massiliense]
 gi|265679094|gb|ACY76266.1| DNA gyrase A [Mycobacterium bolletii]
          Length = 183

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 98/183 (53%), Positives = 133/183 (72%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTEAR+T +
Sbjct: 61  AETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT++P HN++E+
Sbjct: 121 AMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 200 CEA 202
            EA
Sbjct: 181 AEA 183


>gi|262477434|gb|ACY68194.1| DNA gyrase subunit A [Escherichia coli]
          Length = 199

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 114/198 (57%), Positives = 153/198 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L+ ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLSYIDDEDI 180

Query: 213 SIEKLLEYIIGPDFPTGG 230
           SIE L+E+I GPDFPT  
Sbjct: 181 SIEGLMEHIPGPDFPTAA 198


>gi|71031392|ref|XP_765338.1| DNA gyrase subunit A [Theileria parva strain Muguga]
 gi|68352294|gb|EAN33055.1| DNA gyrase subunit A, putative [Theileria parva]
          Length = 1014

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 159/521 (30%), Positives = 272/521 (52%), Gaps = 42/521 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                +E+++ + L   +   +L YALS I  RA+PD RDG K VHRRII AM  + LD 
Sbjct: 91  DGDSEKESLEYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLKLDP 150

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++K A++VG+V+G  HPH D+SVYD+L RL+Q F+ + PLI G GNFG+ + D  AA
Sbjct: 151 NGQYRKCAKVVGDVLGNYHPHSDKSVYDALCRLSQDFIMKVPLIDGHGNFGS-NNDPPAA 209

Query: 129 YRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            RYTE R+T  +  ++L  ++ + +D+   ++  + EP+V P + PN+L NG+SGIAVG+
Sbjct: 210 MRYTECRLTNFSKMIMLNDINFNTIDYIPNFDNTNIEPMVLPCRLPNILINGSSGIAVGL 269

Query: 188 ATSIPSHNVQEICEAALALIDN---------------------PEISIEKLLEYIIGPDF 226
           AT+IP HN  E+  A +  I +                      +    +++  ++GPDF
Sbjct: 270 ATNIPPHNPTEVINATIQFIKSHLNTTTETTAETRSDTTVDGLKDDKNVEIVNEVMGPDF 329

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARW-----------------CVEEVGRGSWCIV 269
           PTGG+I  +RE++ + Y  G+G   +++++                  ++        IV
Sbjct: 330 PTGGVIRTTREAMRKIYESGKGTVLIQSKFVFEEKFRDVINVYNNFKDIKFKHNSRISIV 389

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           + +IPY  + + +IE I   I    I  + D++DES  +   ++    R++   + ++ I
Sbjct: 390 INQIPYNTRINDIIENINRNIKNNNIIGVNDVKDESDRNGTRIVVELKRNISSVIEIQEI 449

Query: 330 FMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
                  T +    N ++     P    L  ILK WL  R +VL R+    +  + + ++
Sbjct: 450 MAKLQRLTEYNYKCNFITLDQDKPIRFNLYTILKIWLDFRLKVLKRKYKHLLLKLKKNLD 509

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDK-PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
           I+   +I YLNI+ II   +N  K    V+   F L ++Q+ +++ L LR L +L    +
Sbjct: 510 IINAYIIIYLNINTIINSFQNHQKGVYKVLKEEFKLNDDQMKSVMRLTLRQLNQLNIDNL 569

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           K +      + E  +++LN+    +N+I  ++ E+K+ F  
Sbjct: 570 KEKSGEYTKQIEFYENVLNNDTNLYNEIISDLTELKDHFKN 610



 Score = 46.3 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 74/253 (29%), Gaps = 8/253 (3%)

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E+  + I+   L  + K++  Q   + +   + +       +S     +  +      K 
Sbjct: 650 ESDDNIIIYNSLGRISKIKLDQKFYKSNKNKSIRISNPIHSHSTTPDTSIESSTPDSNKN 709

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
             +K  +         EV         + +I  +   ++  N   ++  K        L 
Sbjct: 710 NRAKKGETKIDEAAALEVGYCSNNNSNKIIIILKNGRIMHVNSSKLKLCKKGYDMFKYLG 769

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
            K  + ++           +++   G                 +    L     N++I  
Sbjct: 770 IKNDEMIEYITSIGKHLGDIIMVGYGNGIMTICNTNRLNLKLSKTKLNLKLNLKNKEIKF 829

Query: 605 AFVYDSTC-----KLLVVSSKGNAFIVEESEIIAN--TRKGKTFLKVSSEEKMKLVVKVT 657
            F Y+         L + + +G    +    I+     +K    +++   +++       
Sbjct: 830 FFNYNLNHISQNPFLFICTKRGYCIKISLRSIMEKFDKKKNVKLIRLHKGDEVVSSCLAN 889

Query: 658 GD-HVAVVGENRK 669
              H+ ++    K
Sbjct: 890 DQQHILILTSKGK 902


>gi|49425508|gb|AAT66069.1| DNA gyrase A [Shigella dysenteriae]
          Length = 193

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 111/193 (57%), Positives = 149/193 (77%)

Query: 32  AYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGD 91
            YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD
Sbjct: 1   DYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGD 60

Query: 92  QSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ 
Sbjct: 61  SAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKET 120

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L  ID+ +
Sbjct: 121 VDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYIDDED 180

Query: 212 ISIEKLLEYIIGP 224
           ISIE L+E+I GP
Sbjct: 181 ISIEGLMEHIPGP 193


>gi|110589965|gb|ABG77429.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589973|gb|ABG77433.1| DNA gyrase A [Shigella flexneri]
          Length = 194

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 114/194 (58%), Positives = 151/194 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEYIIGPDF 226
           SIE L+EYI GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|190351702|gb|ACE76308.1| GyrA [Clostridium difficile]
          Length = 192

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 103/192 (53%), Positives = 150/192 (78%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHG+ +VY
Sbjct: 1   SVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGNTAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF+
Sbjct: 61  YAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFK 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++E   EP V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + LIDNPE S++
Sbjct: 121 PNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSVD 180

Query: 216 KLLEYIIGPDFP 227
            L++++ GPDFP
Sbjct: 181 DLIKFVQGPDFP 192


>gi|118638610|gb|ABL09462.1| gyrase subunit A [Clostridium difficile]
          Length = 194

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 102/191 (53%), Positives = 149/191 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +V
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +  ++E   EP V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + LIDNPE S+
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 215 EKLLEYIIGPD 225
           + L++++ GPD
Sbjct: 181 DDLIKFVQGPD 191


>gi|295092033|emb|CBK78140.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Clostridium cf. saccharolyticum K10]
          Length = 257

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 112/225 (49%), Positives = 155/225 (68%), Gaps = 2/225 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L      
Sbjct: 1   MAEKIIKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELHLGHDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ + AE + L+ +D+  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSI
Sbjct: 121 EARLEKFAEEVYLKDLDK-TVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
           P HN+ E+ +   A IDNPE+  E+LL ++ GPDFPTGGII   R
Sbjct: 180 PPHNLGEVVDTVQAFIDNPELRTEELLGHLHGPDFPTGGIIATKR 224


>gi|110589963|gb|ABG77428.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589969|gb|ABG77431.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589975|gb|ABG77434.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589977|gb|ABG77435.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 114/194 (58%), Positives = 152/194 (78%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEYIIGPDF 226
           SIE L+EYI GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|31745499|gb|AAP55223.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 177

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 101/176 (57%), Positives = 137/176 (77%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  DVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 HGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 176


>gi|265679098|gb|ACY76268.1| DNA gyrase A [Mycobacterium immunogenum]
          Length = 181

 Score =  346 bits (887), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 96/181 (53%), Positives = 131/181 (72%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTEAR+T +
Sbjct: 61  AETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT++P HN++E+
Sbjct: 121 AMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 200 C 200
            
Sbjct: 181 A 181


>gi|118638608|gb|ABL09461.1| gyrase subunit A [Clostridium difficile]
          Length = 195

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 102/191 (53%), Positives = 149/191 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +V
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +  ++E   EP V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + LIDNPE S+
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 215 EKLLEYIIGPD 225
           + L++++ GPD
Sbjct: 181 DDLIKFVQGPD 191


>gi|311033952|gb|ADP55402.1| DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 285

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 139/286 (48%), Positives = 204/286 (71%), Gaps = 1/286 (0%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 1   MNDLGMSSDKVYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG 
Sbjct: 61  VDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGA 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDFPT G I+  R  I 
Sbjct: 121 AGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIR 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D
Sbjct: 180 KAYESGRGSITIRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITD 239

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +RDES  +   ++    R  +  +++ +++  + ++T F +N+  L
Sbjct: 240 LRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 285


>gi|112806708|emb|CAJ28004.1| DNA gyrase subunit A [Mesorhizobium plurifarium]
          Length = 218

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 119/219 (54%), Positives = 158/219 (72%), Gaps = 1/219 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++AM E G  +     KS+RIVG+V+GK HPHGD S+YD+LVR+AQ +
Sbjct: 1   VRDGLKPVHRRILYAMQEGGYHWNRKHVKSSRIVGDVMGKYHPHGDASIYDALVRMAQDW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R PLI GQGNFG+ID D  AA RYTE+R+T+VA  +L+ +D++ VDF+D Y+  + EP
Sbjct: 61  SLRVPLIDGQGNFGSIDADPPAAMRYTESRLTKVAHELLEDIDKETVDFQDNYDGAEQEP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
            V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E + GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLAEVCNGAMAIIDNPAIDLPALMEIVPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           FPTGGI++  R  I  +Y  GRG   +R R  +E  G  
Sbjct: 181 FPTGGIVL-GRSGIYSAYSTGRGSIVMRGRVEIERRGND 218


>gi|253682983|ref|ZP_04863769.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium phage D-1873]
 gi|253560812|gb|EES90275.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium phage D-1873]
          Length = 752

 Score =  344 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 152/763 (19%), Positives = 306/763 (40%), Gaps = 48/763 (6%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
               L   L++ ++ +A   I    +P + DG  PV+R+++ A+    +     + K  R
Sbjct: 2   IKRDLPRVLQDEFIGFASEVIVNN-LPSI-DGLLPVNRKVLWALHRNKVTPDKNYIKLLR 59

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG---NIDGDSAAAYRYTEA 134
                +   +  GD  +  ++  +A     +Y  +  +G+FG   +  G   A+ RY E 
Sbjct: 60  ASSMSM-VYYIFGDIPLTTAMKNMANN-GVKYFYLDPKGSFGDKQSKTGKG-ASPRYIEC 116

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++ +  IL+ +D++ V  +  +++ + EP+V PS  PN+L N +  IAVG+A+ I  H
Sbjct: 117 RLSKYSMDILKNIDKNIVPMKRNFDDTEDEPIVLPSMIPNVLINTSQSIAVGLASKIAGH 176

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ + C++ +  I   +  I+K ++ I  PD P GG ++  + +  + Y+ G G F +  
Sbjct: 177 NLIDTCDSIINYIQTKD--IDKSIDIIKCPDLPLGGKVIYDKNTFDQIYKTGHGSFTLLG 234

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           ++ +++         + EIPY+     +  K+ E         + DI D S      +  
Sbjct: 235 KYKMKQCD-KYNIFSIYEIPYETTIEDIENKLREKCDKGFFKEIIDIHDASDRKGIQLDI 293

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLF 373
              ++ +    +  +      E++FP N  +L   G+ P +M L  I   W+ HR   + 
Sbjct: 294 YLKKNTNLKQFISKLRKYIPYESKFPCNFTILDLDGKTPLLMSLQDIFDRWIQHRVNCIK 353

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
               + ++     +  L GL I    +D+ I IIR+          ++  F L + Q + 
Sbjct: 354 NEMLYDVKKYSEELNKLNGLKIINNELDKAIQIIRSSKTEKVAIEELIKYFKLNKEQAEY 413

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I  +RL ++ +         +D L +   K+++  NS +     I  ++ EVK+ F K  
Sbjct: 414 IATIRLVNINQDWILNKLQNIDELSSNVNKLNTDYNSEQTIKEIIISQLEEVKKKFGKP- 472

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               RRT              + ++E    T+V++ + +I+  +  S    +   K+ D 
Sbjct: 473 ----RRTEII-YEDEIADVSHEDLVEDFNPTLVLTEQQYIKKNRVFS---QSQKLKDDDK 524

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE----AIQLLIDLNHNQDIVTAF 606
           +      +  D +LL +  G         L   +           L   L  N+ ++   
Sbjct: 525 ILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEYLQDNEKVIYIS 584

Query: 607 VYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
                   ++ V   GN   ++  E  +   +       +++  +  +  +T D  V +V
Sbjct: 585 TTKDYKGSVIAVFENGNVARIDLQEYKSKQNRQIPMSAYNTDSNLISIAVITTDVDVLLV 644

Query: 665 GENRKLLIFSIDQIPEM-SR-GKGVRLQSYKDGG---ISDVICFKICEGLTWIDSAGRSY 719
            +  K LI +  Q+    SR  KGV            I  +I   +           +  
Sbjct: 645 SQEGKALIVNTSQLRPTKSRNTKGVVGMKIDPEDNKVIGSIIGVTVDHNFNI--ETEKGK 702

Query: 720 NR-----------SENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           ++            E+      G R   G+ +     ++ K +
Sbjct: 703 SKFIMLNDIAPNGKESMTEYLKGNRNTQGNFIYNTRQKNDKVI 745


>gi|80159786|ref|YP_398530.1| putative DNA gyrase A subunit [Clostridium phage c-st]
 gi|78675376|dbj|BAE47798.1| putative DNA gyrase A subunit [Clostridium phage c-st]
          Length = 752

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 151/763 (19%), Positives = 307/763 (40%), Gaps = 48/763 (6%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
               L   L++ ++ +A   I    +P + DG  PV+R+++ A+    +     + K  R
Sbjct: 2   IKRDLPRVLQDEFIGFASEVIVNN-LPSI-DGLLPVNRKVLWALHRNKVTPDKNYIKLLR 59

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG---NIDGDSAAAYRYTEA 134
                +   +  GD  +  ++  +A     +Y  +  +G+FG   +  G   A+ RY E 
Sbjct: 60  ASSMSM-VYYIFGDIPLTTAMKNMANN-GVKYFYLDPKGSFGDKQSKTGKG-ASPRYIEC 116

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++ +  IL+ +D++ V  +  +++ + EP+V PS  PN+L N +  IAVG+A+ I  H
Sbjct: 117 RLSKYSMDILKNIDKNIVPMKRNFDDTEDEPIVLPSMIPNVLINTSQSIAVGLASKIAGH 176

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ + C++ +  I   +  I+K ++ I  PD P GG ++  + +  + Y+ G G F +  
Sbjct: 177 NLIDTCDSIINYIQTKD--IDKSIDIIKCPDLPLGGKVIYDKNTFDQIYKTGHGSFTLLG 234

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           ++ +++         + EIPY+     +  K+ E         + DI D S      +  
Sbjct: 235 KYKMKQCD-KYNIFSIYEIPYETTIEDIENKLREKCYKGLFKEIIDIHDASDRKGIQLDI 293

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLF 373
              ++ +    +  +   +  E++FP N  +L   G+ P +M L  I   W+ HR   + 
Sbjct: 294 YLKKNTNLKQFISKLRKYTPYESKFPCNFTILDLDGKTPLLMSLQDIFDRWIQHRVNCIK 353

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
               + ++     +  L GL I    +D+ I IIR+          ++  F L + Q + 
Sbjct: 354 NEMLYDVKKYSEELNKLNGLKIINNELDKAIQIIRSSKTEKVAIEELIKYFKLNKEQAEY 413

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I  +RL ++ +         +D L +   K+++  NS +     I  ++ EVK+ F K  
Sbjct: 414 IATIRLVNINQDWILNKLQNIDELSSNVNKLNTDYNSEQTIKEIIISQLEEVKKKFGKP- 472

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               RRT              + ++E    T+V++ + +I+  +  S    +   K+ D 
Sbjct: 473 ----RRTEII-YEDEIADVSHEDLVEDFNPTLVLTEQQYIKKNRVFS---QSQKLKDDDK 524

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE----AIQLLIDLNHNQDIVTAF 606
           +      +  D +LL +  G         L   +           L   L  N+ ++   
Sbjct: 525 ILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEYLQDNEKVIYIS 584

Query: 607 VYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
                   ++ V   GN   ++  E  +   +       ++   +  +  +T D  V +V
Sbjct: 585 TTKDYKGSVIAVFENGNVARIDLQEYKSKQNRQIPMSAYNTNSNLISIAVITTDVDVLLV 644

Query: 665 GENRKLLIFSIDQIPEM-SR-GKGVRLQSYKDG---GISDVICFKICEGLTWIDSAGRSY 719
            +  K LI +  Q+    SR  +GV            I  +I   + +         +  
Sbjct: 645 SQEGKALIINTSQLRPTKSRNTQGVVGMKIDPENNKVIGSIIGVTVDDNFNV--ETEKGK 702

Query: 720 NR-----------SENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           ++            E+      G R   G+ +     ++ K +
Sbjct: 703 SKFIMLNDIAPNGKESMTEYLKGNRNTQGNFIYNTRQKNDKVI 745


>gi|145629331|ref|ZP_01785130.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978834|gb|EDJ88557.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 187

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 95/187 (50%), Positives = 134/187 (71%), Gaps = 3/187 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIP 192
           GMAT+IP
Sbjct: 178 GMATNIP 184


>gi|121822772|gb|ABM65607.1| DNA gyrase A [Shigella flexneri]
          Length = 188

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 109/188 (57%), Positives = 147/188 (78%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEY 220
           SIE L+E+
Sbjct: 181 SIEGLMEH 188


>gi|112806706|emb|CAJ28003.1| DNA gyrase subunit A [Mesorhizobium mediterraneum]
          Length = 218

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 123/219 (56%), Positives = 159/219 (72%), Gaps = 1/219 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R PLI GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF+DTY+   SEP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASGSEP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
            V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+ALIDNP I +  L+E I GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIALIDNPAIDLPALMEIIPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           FPTGGI++  R  I  +Y  GRG   +R R  +E+ G  
Sbjct: 181 FPTGGIVL-GRSGIYSAYSTGRGSIVMRGRVNIEQRGND 218


>gi|112806704|emb|CAJ28002.1| DNA gyrase subunit A [Mesorhizobium loti]
          Length = 218

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 121/219 (55%), Positives = 160/219 (73%), Gaps = 1/219 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R PLI GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF+DTY+  D+EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
            V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E I GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAVIDNPAIDLPALMEIIPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           FPTGGI++  R  I  +Y  GRG   +R +  +E+ G  
Sbjct: 181 FPTGGIVL-GRSGIYSAYSTGRGSIVMRGKVNIEQRGND 218


>gi|112806702|emb|CAJ28001.1| DNA gyrase subunit A [Mesorhizobium huakuii]
          Length = 218

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 121/219 (55%), Positives = 160/219 (73%), Gaps = 1/219 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R PLI GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF+DTY+  D+EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
            V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E I GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           FPTGGI++  R  I  +Y  GRG   +R +  +E+ G  
Sbjct: 181 FPTGGIVL-GRSGIYSAYSTGRGSIVMRGKVNIEQRGND 218


>gi|112806700|emb|CAJ28000.1| DNA gyrase subunit A [Mesorhizobium ciceri]
          Length = 218

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 123/219 (56%), Positives = 158/219 (72%), Gaps = 1/219 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI+ A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +
Sbjct: 1   VRDGLKPVHRRILFAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R PLI GQGNFG+IDGD  AA RYTEAR+T+VA  +L+ +D+D VDF+DTY+   SEP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTEARLTKVAHELLEDIDKDTVDFQDTYDASGSEP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
            V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E I GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           FPTGGI++  R  I  +Y  GRG   +R R  +E+ G  
Sbjct: 181 FPTGGIVL-GRSGIYSAYSTGRGSIVMRGRVNIEQRGND 218


>gi|121822733|gb|ABM65605.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 188

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 108/188 (57%), Positives = 147/188 (78%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEY 220
           SIE L+E+
Sbjct: 181 SIEGLMEH 188


>gi|313621658|gb|EFR92451.1| DNA gyrase/topoisomerase IV, A subunit [Listeria innocua FSL
           S4-378]
          Length = 192

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 98/190 (51%), Positives = 143/190 (75%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 191 IPSHNVQEIC 200
           IP+H++ E+ 
Sbjct: 183 IPTHHLGEVI 192


>gi|213864879|ref|ZP_03386998.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 178

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 96/172 (55%), Positives = 131/172 (76%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKS
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           + ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGM
Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGM 178


>gi|90969014|gb|ABE02577.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 110/197 (55%), Positives = 148/197 (75%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ H
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 208 DNPEISIEKLLEYIIGP 224
           D+ + S+E+++++I GP
Sbjct: 181 DSKDTSLEEIMQFIKGP 197


>gi|90969022|gb|ABE02581.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 110/197 (55%), Positives = 148/197 (75%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ H
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 208 DNPEISIEKLLEYIIGP 224
           D+ + S+E+++++I GP
Sbjct: 181 DSKDASLEEIMQFIKGP 197


>gi|90969026|gb|ABE02583.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 110/197 (55%), Positives = 149/197 (75%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ H
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 208 DNPEISIEKLLEYIIGP 224
           D+ ++S+E+++++I GP
Sbjct: 181 DSKDVSLEEIMQFIKGP 197


>gi|90969018|gb|ABE02579.1| gyrase A [Campylobacter jejuni]
 gi|90969020|gb|ABE02580.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 110/196 (56%), Positives = 148/196 (75%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 209 NPEISIEKLLEYIIGP 224
           + + S+E+++++I GP
Sbjct: 182 SKDASLEEIMQFIKGP 197


>gi|90969028|gb|ABE02584.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 111/197 (56%), Positives = 148/197 (75%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ H
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 208 DNPEISIEKLLEYIIGP 224
           DN + S+E+++++I GP
Sbjct: 181 DNKDASLEEIMQFIKGP 197


>gi|90969016|gb|ABE02578.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 110/196 (56%), Positives = 148/196 (75%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 209 NPEISIEKLLEYIIGP 224
           + + S+E+++++I GP
Sbjct: 182 SKDTSLEEIMQFIKGP 197


>gi|90969024|gb|ABE02582.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 110/196 (56%), Positives = 149/196 (76%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 209 NPEISIEKLLEYIIGP 224
           + ++S+E+++++I GP
Sbjct: 182 SKDVSLEEIMQFIKGP 197


>gi|157644498|gb|ABV58972.1| GyrA [Bacillus subtilis subsp. subtilis]
          Length = 300

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 134/297 (45%), Positives = 200/297 (67%), Gaps = 1/297 (0%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI++AM+++G+     +KKSARIVGEVIGK HP GD +VY+S VR+AQ F   Y L+ G
Sbjct: 1   RRILYAMNDLGMTSDKPYKKSARIVGEVIGKSHPRGDSAVYESRVRMAQDFNYLYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            GNFG +DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPN
Sbjct: 61  HGNFGFVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPN 120

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
           LL NG +GIAVGMAT+IP H + EI +  LA+ +NP+++I +L+E I GPDFPT G I+ 
Sbjct: 121 LLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELMEVIPGPDFPTAGQIL- 179

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 180 GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 239

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           I  + D+RDES      ++    R  + ++++ +++  +       + + +      
Sbjct: 240 IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAHSGHSEVTIVLSMHMTT 296


>gi|224039159|gb|ACN38390.1| DNA gyrase subunit A [Achromobacter denitrificans]
          Length = 163

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 99/163 (60%), Positives = 129/163 (79%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK HPHGDQ
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPHGDQ 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           SVY ++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ ++A  +L  +D++ V
Sbjct: 61  SVYGTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLADIDQETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           DF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 121 DFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHN 163


>gi|27262294|gb|AAN87428.1| DNA gyrase subunit A [Heliobacillus mobilis]
          Length = 639

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 143/579 (24%), Positives = 259/579 (44%), Gaps = 15/579 (2%)

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           M  +IP HN+ E+ +A   +IDNP ++ E L++ I GPDFPTGG ++  RE I ++Y  G
Sbjct: 1   MGXNIPPHNLSEVVDAVFMMIDNPNVTTEDLMKSIKGPDFPTGG-LIMGREGIRQAYLTG 59

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +RA+  +E++  G   I+V EIPYQV K++L+E+IAEL+  KR+  + D+RDES 
Sbjct: 60  RGSVIMRAKARIEKMNGGKMRILVHEIPYQVNKAKLLERIAELVRDKRVDGITDLRDESD 119

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++    R ++P +++  ++  + M+  F +NM  L    VP+V+ L  I+  +L 
Sbjct: 120 RKGMQIVIELRRDVNPQVVLNQLYKHTQMQDTFGVNMLALVD-NVPKVLNLRDIIYYYLE 178

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           H+++V+ RR+ + ++  + R  IL+GL IA  NID II IIR  +     +  M+  F  
Sbjct: 179 HQKDVIVRRTRYDLEKAEARAHILEGLRIAIDNIDRIIEIIRTSETEDVARSQMMGEFGF 238

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNL--LAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +E Q  AIL++RL+ L +    +   +       +         NS K   + I  EI E
Sbjct: 239 SEKQAQAILDMRLKRLVRNWTGKRLKKSIQSLLNSFAYFRARNWNSEKLVLDIIKKEIGE 298

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           +K  F+ +                  A     +       +   +    ++ +     ++
Sbjct: 299 IKAKFADARRTEITAGAGDFDIEDLIAEEDAVVTITHNGYIKRLHVNTYKAQRRGGKGVT 358

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
           A+  KE D +++     T   +L  +  GK Y L    +       +  AI  L+++  +
Sbjct: 359 AMGTKEDDFVELLFITTTHHYLLFFTDKGKVYRLKTHEIPEASRTAKGTAIVNLLNITGD 418

Query: 600 QDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
             +              LL  +  G        +  ++ ++G   L +   +++  V   
Sbjct: 419 DKVNAVIPVKEFSKDQYLLTATRNGIVKKTVLQQYDSSRKEGLIALTLDDGDELIGVKLT 478

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWID 713
            G+  + +   N   + F    + EM R  +GV+     KD  +  +  FK  + +  + 
Sbjct: 479 DGESDILLATRNGMAVRFPEGDVREMGRTTRGVKGIELSKDDFVVAMETFKDDDKIDLLM 538

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  +           RGG G +  +   ++G    
Sbjct: 539 ITESGMGKRTAVEEYRSQHRGGKGIISMRLTQKTGLMAG 577



 Score = 70.6 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 12/145 (8%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAF 624
           + +G A   P G++         +   I+L+ +  +V    +    K  LL+++  G   
Sbjct: 488 TRNGMAVRFPEGDVREMGRTTRGV-KGIELSKDDFVVAMETFKDDDKIDLLMITESGMGK 546

Query: 625 IVEESEIIANTRKGKTFLKVSSE------EKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                E  +  R GK  + +           +K+V    GD + V+     ++  ++D+I
Sbjct: 547 RTAVEEYRSQHRGGKGIISMRLTQKTGLMAGIKVVRP--GDELMVISAEGVIIRLNVDEI 604

Query: 679 PEMSR-GKGVRLQSYKDGGISDVIC 702
              SR  +GV +           + 
Sbjct: 605 SRFSRVTQGVSIMKINPNDKVVAVA 629



 Score = 40.9 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +++  G           S    G+ I  +        +    V     +L+V+S++G   
Sbjct: 538 MITESGMGKRTAVEEYRSQHRGGKGIISMRLTQKTGLMAGIKVVRPGDELMVISAEGVII 597

Query: 625 IVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV 656
            +   EI   +R  +G + +K++  +K+  V +V
Sbjct: 598 RLNVDEISRFSRVTQGVSIMKINPNDKVVAVARV 631


>gi|237846379|gb|ACR22827.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 202

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 107/198 (54%), Positives = 147/198 (74%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG
Sbjct: 5   DIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVG 64

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++
Sbjct: 65  AVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLS 124

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ 
Sbjct: 125 HELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELI 184

Query: 201 EAALALIDNPEISIEKLL 218
           +  L L+D+ + S+E+++
Sbjct: 185 DGLLYLLDSKDASLEEIM 202


>gi|46326990|gb|AAS88433.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 197

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 108/196 (55%), Positives = 148/196 (75%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+
Sbjct: 2   IKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+
Sbjct: 62  YHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L 
Sbjct: 122 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 181

Query: 206 LIDNPEISIEKLLEYI 221
           L+D+ + S+E+++++I
Sbjct: 182 LLDSKDASLEEIMQFI 197


>gi|327197938|ref|YP_004306255.1| putative DNA gyrase subunit A-topoisomerase [Lactococcus phage 949]
 gi|306009258|gb|ADM73653.1| putative DNA gyrase subunit A-topoisomerase [Lactococcus phage 949]
          Length = 704

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 176/738 (23%), Positives = 316/738 (42%), Gaps = 52/738 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L+  + +    Y+   +  RAIPD RDG KP +RRI+ AM EM       F KS
Sbjct: 2   EIVEKELQHIVTDNMGQYSTYVLLSRAIPDFRDGLKPSYRRILWAMQEMKAT---RFTKS 58

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA------AY 129
             + G V+   HPHG  S Y ++V +AQ   Q  P++ G+GNFG       A      A 
Sbjct: 59  FNVAGAVM-LYHPHG--STYPTMVGMAQKDSQLNPMVIGKGNFG-----QHASELAFGAE 110

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE +++ +   ++  V +  VDF D Y+     P VFP K+P +LA   SGI VG ++
Sbjct: 111 RYTEVKLSAIGLDMMADVKKGGVDFIDNYDGTRRIPEVFPVKYPTILAYAQSGIGVGFSS 170

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIPS N  E+CEA           IE   + ++ PDF TG  I+   + I      G G 
Sbjct: 171 SIPSFNTTELCEAI-------IKRIEDNEQTLLIPDFGTGAYIINDPDVIKSINENGSGS 223

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
              RA+   ++  R    I+V EIPY   K ++IE+I +L    ++  +  + D S    
Sbjct: 224 INQRAKVEFDKDSR---EIIVKEIPYGTTKEKIIERIIKLNKEDKLKEVAKVEDTSGLKG 280

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R +D + L+E ++ ++ M+  +  N+ V++   +P+ M +  ++ +WL  R 
Sbjct: 281 LEIVITAKRGVDLEQLLEKLYQMTPMQASYSTNLMVINREGLPEKMGVWTLIAKWLDWRT 340

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--PVMVSRFSLTENQ 427
           +   R  +  +Q    ++EIL GL     +++ +I IIRN         + S F+L++ Q
Sbjct: 341 DTYQRMITKDIQTKQVQLEILYGLENIKDDLEHVIKIIRNSTDDNVIQNLSSEFNLSKLQ 400

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + +  L+L++L      +  S + +L  E E+++  +   ++    I  ++++V   F 
Sbjct: 401 AERVSGLKLKNLTTTFIKKQLSSIKSLEKEIEQLEWTVEKPQRIHKLIVQDMKDVIAQFG 460

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS-VDLSALHFK 546
                     +                +E+  + V+++  G+++ +   S    + + FK
Sbjct: 461 TPRKSQLIDKSIVAKKAKLSPVNT---VEEYNVKVIVTKDGYVKKIPLTSLRGNAEIQFK 517

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVT 604
           EGD+    +     + +L+ +     Y     +L   +       I  LIDL   ++I  
Sbjct: 518 EGDTPTSEIDTDNGEELLIFTNKQNVYKKQLNDLSDTKPKDLGNYIPSLIDLEKGEEIKG 577

Query: 605 AFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
                  T  +L+    G    V       +T++ K    V  +  + L        +  
Sbjct: 578 IITLSKDTKYVLLGFEDGKVAKVNVEAYRTSTKRSKLKNGVVGKMIVLLTTLTDDVDIMS 637

Query: 664 VGENRKLLIFSIDQIPEM-SRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           + E+ K ++ +   I    S+  +G+  Q  K+G     +     +              
Sbjct: 638 ISESNKAIVTNTSMISAKNSKATQGITNQKLKEGESIKKLLVLQEDEED----------- 686

Query: 722 SENDLLGWLGKRGGVGSL 739
             N     +    G G  
Sbjct: 687 --NREYYRVQS-AGAGKK 701


>gi|7264704|gb|AAF44319.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 96/164 (58%), Positives = 128/164 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
              Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|121822754|gb|ABM65606.1| DNA gyrase A [Shigella flexneri]
          Length = 188

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 108/188 (57%), Positives = 146/188 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +V D++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVDDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMAELEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEY 220
           SIE L+E+
Sbjct: 181 SIEGLMEH 188


>gi|13810783|gb|AAK40036.1|AF272026_1 DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 247

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 135/248 (54%), Positives = 185/248 (74%), Gaps = 1/248 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG
Sbjct: 1   AMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG
Sbjct: 61  SVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMAT+IP H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I
Sbjct: 121 AAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + 
Sbjct: 180 RKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGIT 239

Query: 300 DIRDESAE 307
           D+RDES  
Sbjct: 240 DLRDESDR 247


>gi|13810773|gb|AAK40031.1|AF272021_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 253

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 133/253 (52%), Positives = 185/253 (73%), Gaps = 1/253 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG
Sbjct: 1   AMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG
Sbjct: 61  SVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I
Sbjct: 121 AAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + 
Sbjct: 180 RKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGIT 239

Query: 300 DIRDESAEDVRIV 312
           D+RDES      +
Sbjct: 240 DLRDESDRTGMRI 252


>gi|313757053|gb|ADR78334.1| gyrase [Ferroplasma acidiphilum]
          Length = 176

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 93/173 (53%), Positives = 125/173 (72%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   ++  YL YA+S I  RAIPD RDG KPV RRII++M E+G+     +KKSARI+G
Sbjct: 4   PIEEEIKTSYLDYAMSVIVSRAIPDFRDGLKPVQRRIIYSMYELGVTHDKPYKKSARIIG 63

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           E +GK HPHGD S+Y++L R+AQ F  RY LI GQGNFG+IDGD+ AA RYTEAR+ ++A
Sbjct: 64  ETMGKYHPHGDSSIYEALARMAQDFSLRYTLIDGQGNFGSIDGDAPAAMRYTEARLGKMA 123

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           E +++ ++++ V F   ++    EPV FPS+ P LL NGTSGIAVGMAT++  
Sbjct: 124 EEMVRDIEKETVPFSPNFDGSLDEPVYFPSRIPQLLINGTSGIAVGMATNMVP 176


>gi|239737041|gb|ACS13100.1| GyrA [Pseudomonas putida]
          Length = 163

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 127/163 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM ++A  +L  + ++ V
Sbjct: 61  AVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLHKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           D+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 121 DWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 163


>gi|213419120|ref|ZP_03352186.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 219

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 98/211 (46%), Positives = 147/211 (69%), Gaps = 1/211 (0%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               L+ +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+
Sbjct: 8   EDPLLMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLN 67

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSA 126
             A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S 
Sbjct: 68  ATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 127

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVG
Sbjct: 128 AAMRYTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVG 187

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKL 217
           MAT IP HN++E+ +AA+ LI+ P+ ++++L
Sbjct: 188 MATDIPPHNLREVAKAAITLIEQPKTTLDQL 218


>gi|118474051|ref|YP_884869.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|118175338|gb|ABK76234.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
          Length = 713

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 175/736 (23%), Positives = 318/736 (43%), Gaps = 60/736 (8%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +      + V   S         L +AL ++ +RAIP   DG KP  RR+++ M +  L 
Sbjct: 6   DVPEQNPDLVLDQSADDYWNHYQLTFALYSVSDRAIPSAYDGLKPGQRRLLYQMHDSKLL 65

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
            G   +KS+++   V G LHPHG  S+Y +   +A  F QR  +I GQG F  I GD  A
Sbjct: 66  PGNKPQKSSKVCSAVTGNLHPHGGASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDIPA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE R++     +   +++ AV    T++ E  EP V P+++P LL NG  GIA G 
Sbjct: 125 ADRYTEMRLSAPGAALTAELNDHAVPMVPTFDGEWVEPTVLPAQWPVLLCNGAVGIAEGW 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT +P+HN +E+  A  AL+  P ++ ++L + I GPD+ +G  +V     + E    GR
Sbjct: 185 ATKVPAHNPREVMAACRALLKTPNMTDDRLCKLIPGPDWGSGASVV-GTAGLREYITTGR 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G F VR    VE    G  CI+ TE+P  V  + + ++I  L+ +  +  + D+ D +  
Sbjct: 244 GHFTVRGTISVE----GKNCII-TELPPGVASNTVQDRIRALVESGEMSGVADMSDLTDR 298

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +   ++    R  + + + + +  L+ +E+ F  ++  L   RVP+   +  ++  +L 
Sbjct: 299 RNGLRIVVTAKRGHNAEQIRDQLLALTPLESTFAASLVALDENRVPRWWSVRDLIMAFLQ 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSL 423
            R  V+  RS +R++ +  R  ++ GL+  +L+ID  +A+IR  +           RF +
Sbjct: 359 LRDSVVLHRSEYRLEKVTARRHLVAGLMKIHLDIDAAVAVIRGSETVDEARKGLQERFKI 418

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
              Q D +L+L+LR L KL+  ++++E + L AE  +++ L+ + + +   I  E+ E  
Sbjct: 419 DAEQADYVLSLQLRRLTKLDVIELQAEAEKLDAEFAELNDLVTNPESRRKVIDKELVETA 478

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           ++F        RRT     +       +    E+              + +     + + 
Sbjct: 479 KLF--KGPEYDRRTVLDFDATPVSRGDEDGSRER----------KVNTAWRLDDRGVFSD 526

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
              E  +  +     +  RI   + +G  + +                   D+    DI 
Sbjct: 527 SHGELLTSGLGWAVWSDGRIKFTTGNGLPFKIR------------------DIPVAPDIT 568

Query: 604 TAF---VYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKV-SSEEKMKLVVKV- 656
                 V      L +V+ +G    V+ + +        G   +K+ +  +++   + V 
Sbjct: 569 GLVRSGVLPEGYHLALVTRRGKILRVDPASVNPQGVAGNGVAGVKLAADGDEVIAALPVS 628

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
              G+ +  + E     +  +  IP   R G GV    +  G  + +           I 
Sbjct: 629 CANGEAILSIAEKSW-KVTEVADIPVKGRGGAGVAFHPFVKGEDALLAAS--------IS 679

Query: 714 SAGRSYNRSENDLLGW 729
             G    +        
Sbjct: 680 KTGYVRGKRAVRPENR 695



 Score = 57.9 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 10/127 (7%)

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSE--EKMKLVVKVTGDHVAVVGENRKLLIFS 674
           V S G       + +    R     + V+ +    ++  V   G H+A+V    K+L   
Sbjct: 540 VWSDGRIKFTTGNGLPFKIRD----IPVAPDITGLVRSGVLPEGYHLALVTRRGKILRVD 595

Query: 675 IDQIPEMS-RGKGVRLQSYKDGGISDVICFKI--CEGLTWIDSAGRSYNRSENDLLGWLG 731
              +      G GV        G   +    +    G   +  A +S+ +        + 
Sbjct: 596 PASVNPQGVAGNGVAGVKLAADGDEVIAALPVSCANGEAILSIAEKSW-KVTEVADIPVK 654

Query: 732 KRGGVGS 738
            RGG G 
Sbjct: 655 GRGGAGV 661


>gi|221316455|ref|ZP_03598260.1| DNA gyrase/topoisomerase IV, subunit A [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 664

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 180/683 (26%), Positives = 325/683 (47%), Gaps = 49/683 (7%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
              ++   +E   + Y+   + +RA+PDLRDG KPVHRRI+++M    L     F KSA 
Sbjct: 4   TNKNIEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMY---LQKAFKFTKSAN 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG---NIDGDSAAAYRYTEA 134
           + G+V+ KLHPHG  S Y S+V + Q      P++ G+GNFG   + D    AA RY+E 
Sbjct: 61  VAGQVM-KLHPHG--SSYGSMVGMVQKDRHIIPMLEGKGNFGQYTSRD-LMPAADRYSEV 116

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++++++  ++Q  D++ VDF D Y+     P V P KFP++LA   SGI VG ++SIPS 
Sbjct: 117 KLSEISIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSF 176

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ EA +  I+  E ++         PDF TGG+IV+      +    GRG  ++R 
Sbjct: 177 NLKELTEAIVKYIETGEKTVLV-------PDFATGGLIVKEDNVFRQLNEEGRGTVKIRG 229

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + +       I +TEIPY   +  +IEKI EL  A ++  + D++D +     ++  
Sbjct: 230 KAEIVK-----NEIHITEIPYSTTREAIIEKIVELNKAGKLKEVTDVKDLTGLKGMLITI 284

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R+ D ++L+E ++  + +++ F  NMN+L    +P+V+ +   + +WL  R   + R
Sbjct: 285 TARRNTDMNVLLEKLYKFTPLQSTFSANMNMLVDD-LPKVLGVWQTIDKWLEWRTTCIKR 343

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--PVMVSRFSLTENQVDAIL 432
             S  ++ + R++ +L+GL    L+IDE I IIR   + +  P +   F +   Q   + 
Sbjct: 344 GLSHDIETMTRKLHLLQGLEKVLLDIDEAIEIIRRSSQDQIEPNLQKHFGIDFEQAKEVA 403

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           N++LR++ +    +   ++D      E    ++ S  +    I   + E KE + K    
Sbjct: 404 NMKLRNINREYIIKKIEDIDKFEKTIENYKMIVKSQDKINQIIIKGLNETKEKYGKE--- 460

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RRT   E++      L +  +    +T+ ++  G+    K         + K GD + 
Sbjct: 461 --RRTKIVELTEVKPVRLVEE-VPNYAVTIYLTKEGYCYKFK----GNQEPNLKPGDEVL 513

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL-NHNQDIVTAFVYDST 611
                     IL+  +D   + +   ++   R +     L   + + N  IV+  + DST
Sbjct: 514 KVFETENKAEILIFGSDRVCHKVELKDIDETRANALGTYLPNMIRDKNITIVSYSILDST 573

Query: 612 CKLLVVS-SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
            K ++ + S      +       N    K    +  +  +  ++ +  D  + ++ +  K
Sbjct: 574 HKFIIAAYSNNRIAKINLEAFQGNRTILKNSYCLKQD--LLDMITLEDDVSLNLLTDKSK 631

Query: 670 LLI----FSIDQIPEMSR-GKGV 687
           L +    F++       R   GV
Sbjct: 632 LTVDTKNFNLTN----GRNATGV 650


>gi|257472200|gb|ACV53941.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 129/260 (49%), Positives = 186/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYTLVQGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+  NP+I++ +L+E I GPDFPT G ++  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPDITLPELVEIIPGPDFPTAG-LILGRSGIRKAYET 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   ++    R  + ++L
Sbjct: 240 DRNGMRIVIELRRGANANVL 259


>gi|308198937|dbj|BAJ22603.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 193

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 108/191 (56%), Positives = 143/191 (74%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+
Sbjct: 3   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+
Sbjct: 63  YHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L 
Sbjct: 123 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 182

Query: 206 LIDNPEISIEK 216
           L+DN + S+E+
Sbjct: 183 LLDNKDASLEE 193


>gi|257472216|gb|ACV53949.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472218|gb|ACV53950.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 130/260 (50%), Positives = 186/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+  NPEI++ +L+E I GPDFPT G ++  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPEITLPELMEIIPGPDFPTAG-LILGRSGIRKAYET 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   ++    R  + ++L
Sbjct: 240 DRNGMRIVIELRRDANANVL 259


>gi|308198939|dbj|BAJ22604.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 194

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 108/191 (56%), Positives = 143/191 (74%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+
Sbjct: 3   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+
Sbjct: 63  YHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L 
Sbjct: 123 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 182

Query: 206 LIDNPEISIEK 216
           L+DN + S+E+
Sbjct: 183 LLDNKDASLEE 193


>gi|7264706|gb|AAF44320.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  334 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 96/164 (58%), Positives = 128/164 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
              Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|257472186|gb|ACV53934.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472188|gb|ACV53935.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472190|gb|ACV53936.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472192|gb|ACV53937.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472196|gb|ACV53939.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472198|gb|ACV53940.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472210|gb|ACV53946.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472212|gb|ACV53947.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472214|gb|ACV53948.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472220|gb|ACV53951.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  334 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 129/260 (49%), Positives = 186/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+  NP+I++ +L+E I GPDFPT G ++  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAG-LILGRSGIRKAYET 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   ++    R  + ++L
Sbjct: 240 DRNGMRIVIELRRDANANVL 259


>gi|19702310|gb|AAL93251.1|AF487466_1 DNA Gyrase A [Yersinia pestis]
 gi|7264710|gb|AAF44322.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 96/164 (58%), Positives = 129/164 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD++V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDRAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
              Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|257472152|gb|ACV53917.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472158|gb|ACV53920.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472160|gb|ACV53921.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472164|gb|ACV53923.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472168|gb|ACV53925.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 134/260 (51%), Positives = 186/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYES 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   V+    R  +  ++
Sbjct: 240 DRNGMRVVIELRRDANAHVI 259


>gi|296085401|emb|CBI29133.3| unnamed protein product [Vitis vinifera]
          Length = 823

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 167/647 (25%), Positives = 296/647 (45%), Gaps = 37/647 (5%)

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           Y    +T+   ++L  +++D VDF   ++    EP + P++ P LL NG+SGIAVGMAT+
Sbjct: 95  YIYFALTEA--MLLADLEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATN 152

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +    LI NPE ++++LLEY+ GPDFPTGG ++     I+E+YR GRG  
Sbjct: 153 IPPHNIGELVDVLCVLIRNPEATLQELLEYMPGPDFPTGG-LIMGNIGILEAYRTGRGRI 211

Query: 251 RVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            VR +  VE  +       +++ EIPYQ  KS L+EKIAEL+  K +  + DIRDES   
Sbjct: 212 IVRGKTEVELLDSKTKRTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRDESDRS 271

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  DP +++  ++ L+ +++ F  NM  +     P++M L  +L+ +L  R
Sbjct: 272 GMRIVIELKRGSDPSIVLNKLYRLTALQSSFSCNMIGILD-GQPKLMGLKELLQAFLDFR 330

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTE 425
             V+ RR+ F++     R  I++G+++   N+D +I +I+           + + F L+E
Sbjct: 331 CSVVERRARFKLSQAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMASTGLRNEFGLSE 390

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL++ LR + +LE  +  +E  +L+ +  K+  LL+S KQ    I  E  E+K  
Sbjct: 391 RQAEAILDISLRRITRLEREKFVTESKSLMEQISKLQELLSSRKQILQLIEQEAIELKNR 450

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALH 544
           FS         T   ++   D    ++ ++       V              ++  S   
Sbjct: 451 FSTPRRSMLEDTDSGQLEDVDVIPNEEMLLAVSEKGYVKRMKPNTFNLQNRGTIGKSVGK 510

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
            +  D++   +  H  D +L  S  G  ++  A  +        G  +  ++ L+  + I
Sbjct: 511 LRVNDAMSDFIVCHAHDYVLYFSDRGIVHSARAYKIPECTRTAAGTPLVQILCLSDGERI 570

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +      +     LL+++  G    V  +   +    G   +++   +++K V   T D
Sbjct: 571 TSIIPVSEFAEDQFLLMLTMNGYIKKVSLNFFSSIRSTGIIAIQLVPGDELKWVRCCTND 630

Query: 660 H-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI---SDVICFKICEGLT---- 710
             VA+  +N  +++ S + I  + R  +G      K G      D+I   I + L     
Sbjct: 631 DLVAMASQNGMVILSSCEIIRALGRNTRGSIAMRLKQGDKMASMDIIPAAIRKDLEKALE 690

Query: 711 -------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                         +  +     +        L     VG +  K  
Sbjct: 691 DRQSRARNLNGPWLLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFS 737



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 13/110 (11%)

Query: 614 LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVA 662
           LL VS  G    V  S        R G    K S+E+ +  V  V         + + V 
Sbjct: 704 LLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFSAEDHLAAVFVVGFSLTEDGESDEQVV 763

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLT 710
           +V ++  +    +  I   SR  +GV L   +  G I         E  T
Sbjct: 764 LVSQSGTINRIKVWDISIQSRFARGVILMRLEYAGKIQSASLMSATETET 813


>gi|257472156|gb|ACV53919.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 134/260 (51%), Positives = 186/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYES 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   V+    R  +  ++
Sbjct: 240 DRNGMRVVIELGRDANAHVI 259


>gi|262477436|gb|ACY68195.1| DNA gyrase subunit A [Escherichia coli]
          Length = 171

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 99/171 (57%), Positives = 133/171 (77%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMVDLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+  
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 171


>gi|308198953|dbj|BAJ22611.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 194

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 107/191 (56%), Positives = 143/191 (74%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+
Sbjct: 3   IKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+
Sbjct: 63  YHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L 
Sbjct: 123 DIDKDTVDFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 182

Query: 206 LIDNPEISIEK 216
           L+D+ + S+E+
Sbjct: 183 LLDSKDASLEE 193


>gi|323651011|ref|YP_004243654.1| ATP-hydrolyzing DNA topoisomerase subunit A [Bacillus subtilis
           subsp. natto]
 gi|323461651|dbj|BAJ77067.1| subunit A of ATP-hydrolyzing DNA topoisomerase [Bacillus subtilis
           subsp. natto]
          Length = 664

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 179/683 (26%), Positives = 323/683 (47%), Gaps = 49/683 (7%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
              ++   +E   + Y+   + +RA+PDLRDG KPVHRRI+++M    L     F KSA 
Sbjct: 4   TNKNIEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMY---LQKAFKFTKSAN 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG---NIDGDSAAAYRYTEA 134
           + G+V+ KLHPHG  S Y S+V + Q      P++ G+GNFG   + D    AA RY+E 
Sbjct: 61  VAGQVM-KLHPHG--SSYGSMVGMVQKDRHIIPMLEGKGNFGQYTSRD-LMPAADRYSEV 116

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++++++  ++Q  D++ VDF D Y+     P V P KFP++LA   SGI VG ++SIPS 
Sbjct: 117 KLSEISIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSF 176

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ EA +  I+  E ++         PDF TGG+IV+      +    GRG  ++R 
Sbjct: 177 NLKELTEAIVKYIETGEKTVLV-------PDFATGGLIVKEDNVFRQLNEEGRGTVKIRG 229

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + +       I +TEIPY   +  +IEKI EL  A ++  + D++D +     ++  
Sbjct: 230 KAEIVK-----NEIHITEIPYSTTRQAIIEKIVELNKAGKLKEVTDVKDLTGLKGMLITI 284

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R+ D ++L+E ++  + +++ F  NMN+L    +P+V+ +   + +WL  R   + R
Sbjct: 285 TARRNTDMNVLLEKLYKFTPLQSTFSANMNMLVDD-LPKVLGVWQTIDKWLEWRTTCIKR 343

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--VSRFSLTENQVDAIL 432
             S  ++ + R++ +L+GL    L+IDE I IIR   + +        F +   Q   + 
Sbjct: 344 GLSHDIETMTRKLHLLQGLEKVLLDIDEAIEIIRRSSRDQIERNLQKHFGIDFEQAKEVA 403

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           N++LR++ +    +   ++D      E    ++ S  +    I   + E KE + K    
Sbjct: 404 NMKLRNINREYIIKKIEDIDKFEKTIENYKMIVKSQDKINQIIIKGLNETKEKYGKE--- 460

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RRT   E++      L +  +    +T+ ++  G+    K         + K GD + 
Sbjct: 461 --RRTKIAELTEVKPVRLVEE-VPNYAVTIYLTKEGYCYKFK----GNQEPNLKPGDEVL 513

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL-NHNQDIVTAFVYDST 611
                     IL+  +D   + +   ++   R +     L   + + N  IV+  + DST
Sbjct: 514 KVFETENKAEILIFGSDRVCHKVELKDIDETRANALGTYLPNMIRDKNITIVSYSILDST 573

Query: 612 CKLLVVS-SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
            K ++ + S      +       N    K    +  +  +  ++ +  D  + ++ +  K
Sbjct: 574 HKFIIAAYSNNRIAKINLEAFQGNRTILKNSYCLKQD--LLDMITLEDDVSLNLLTDKSK 631

Query: 670 LLI----FSIDQIPEMSR-GKGV 687
           L +    F++       R   GV
Sbjct: 632 LTVDTKNFNLTN----GRNATGV 650


>gi|315441935|ref|YP_004074814.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV),
           subunit alpha [Mycobacterium sp. Spyr1]
 gi|315260238|gb|ADT96979.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Mycobacterium sp. Spyr1]
          Length = 711

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 176/698 (25%), Positives = 312/698 (44%), Gaps = 53/698 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ +     E V   S         L +AL ++ +RAIP   DG KP  RR+++ M E  
Sbjct: 1   MTATIEQNPELVLDQSADEYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHESR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  G   +KS++I   V G LHPHG  S+Y +   +A  F QR  +I GQG F  I GD 
Sbjct: 61  LLPGNKPQKSSKICSAVTGNLHPHGGASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDI 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++     +   +D  AV    T++ E +EP V P+++P LL NG  GIA 
Sbjct: 120 PAADRYTEMRLSAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAE 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT +P+HN +E+  A  AL+  P ++ ++L++ I GPD+  G  ++   + + E    
Sbjct: 180 GWATKVPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGASVI-GTDGLREYITT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F VR    V+    G  CI+ TE+P  V    + ++I  L+ +  +  + D+ D +
Sbjct: 239 GRGLFTVRGTVSVD----GKNCII-TELPPGVASGTVQDRIRALVESGEMAGVADMSDLT 293

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
              +   ++    R    + + + +  L+ +E+ F  ++  L   RVP+   +  ++  +
Sbjct: 294 DRRNGLRIVVTAKRGHSAEQIRDQLLALTPLESSFAASLVALDENRVPRWWSVRELIAAF 353

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRF 421
           L+ R  V+  RS +R++ +  R  ++ GL+  +L+ID  +AIIR  D           RF
Sbjct: 354 LSLRDSVVLHRSEYRLEKVTARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGLQERF 413

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           ++   Q D +L L+LR L KL+  ++++E + L AE   +  L+++   +   I  E+ E
Sbjct: 414 AIDAVQADYVLALQLRRLTKLDVIELQAEAEKLDAEFAALTELVSNPDARRKVIDQELVE 473

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             ++F        RRT     +    A   +    +  +           + +     + 
Sbjct: 474 TAKLF--KGPEYDRRTVLDYDATPVAANNSEDGPRERKVN---------AAWRLDDRGVF 522

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           +       S  +     T  RI   +  G  + +                   D+  + D
Sbjct: 523 SDSHGTLLSSGLGWAVWTDGRIKFTTGGGLPFKIR------------------DIPVSPD 564

Query: 602 IVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE---EKMKLV 653
           I       V      L +++ +G    ++ + +        G   +K+++    + +   
Sbjct: 565 ITGLLQSGVLAPGSHLALITRRGRVLRIDPAAVNPQGAAGNGVAGVKLAAGHPEDSVIAA 624

Query: 654 VKVT---GDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
           + +T   G+ +  V E     +  +  IP   R G GV
Sbjct: 625 LPLTCGNGEAILSVSEKGW-KVTDVADIPVKGRGGAGV 661



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 12/129 (9%)

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSE--EKMKLVVKVTGDHVAVVGENRKLLIFS 674
           V + G         +    R     + VS +    ++  V   G H+A++    ++L   
Sbjct: 538 VWTDGRIKFTTGGGLPFKIRD----IPVSPDITGLLQSGVLAPGSHLALITRRGRVLRID 593

Query: 675 IDQIPEMSRGK-GVRLQSY----KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
              +        GV          +  +   +      G   +  + + + +  +     
Sbjct: 594 PAAVNPQGAAGNGVAGVKLAAGHPEDSVIAALPLTCGNGEAILSVSEKGW-KVTDVADIP 652

Query: 730 LGKRGGVGS 738
           +  RGG G 
Sbjct: 653 VKGRGGAGV 661


>gi|7264712|gb|AAF44323.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 95/164 (57%), Positives = 127/164 (77%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPH D +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHCDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
              Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|257472170|gb|ACV53926.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 134/260 (51%), Positives = 185/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ E  LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYES 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   ++    R  +  ++
Sbjct: 240 DRNGMRIVIEIRRDANAHVI 259


>gi|19569753|gb|AAL92168.1| GyrA protein [Bacillus amyloliquefaciens]
          Length = 244

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 133/245 (54%), Positives = 183/245 (74%), Gaps = 1/245 (0%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++
Sbjct: 1   NDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSV 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +
Sbjct: 61  DGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAA 120

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I +
Sbjct: 121 GIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRK 179

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+
Sbjct: 180 AYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDL 239

Query: 302 RDESA 306
           RDES 
Sbjct: 240 RDESD 244


>gi|126438285|ref|YP_001073976.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. JLS]
 gi|126238085|gb|ABO01486.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. JLS]
          Length = 711

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 175/698 (25%), Positives = 311/698 (44%), Gaps = 53/698 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++       + V   S         L +AL ++ +RAIP   DG KP  RR+++ M +  
Sbjct: 1   MTAIIEQNPDLVLDQSADDYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSK 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  G   +KS+++   V G LHPHG  S+Y +   +A  F QR  +I GQG F  I GD 
Sbjct: 61  LLPGNKPQKSSKVCSAVTGNLHPHGGASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDI 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++     +   +D  AV    T++ E +EP V P+++P LL NG  GIA 
Sbjct: 120 PAADRYTEMRLSAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAE 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT +P+HN +E+  A  AL+  P ++ ++L++ I GPD+  G  +V     + E    
Sbjct: 180 GWATKVPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGATVV-GETGLREYITT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F VR    V          V+TE+P  V  + + E+I  L+ +  +  + D+ D +
Sbjct: 239 GRGQFTVRGTVTV-----DGKNCVITELPPGVASNTVQERIRALVESGEMSGVADMSDLT 293

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
              +   ++    R  + + + E +  L+ +E+ F  ++  L   RVP+   +  ++  +
Sbjct: 294 DRRNGLRIVVTAKRGHNAEQIREQLLALTPLESTFAASLVALDENRVPRWWSVRELIAAF 353

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRF 421
           L+ R +V+  RS +R++ +  R  ++ GL++ +L+ID  +A+IR  D           RF
Sbjct: 354 LSLRDKVVLHRSEYRLEKVTARRHLVAGLMLIHLDIDAAVAVIRGSDTVDEARQGLQDRF 413

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           ++   Q D +L L+LR L KL+  ++++E + L AE  ++  L+++   +   I  E+ E
Sbjct: 414 AIDAVQADYVLALQLRRLTKLDVIELQAEAERLDAEFAELTELVSNPDARRVVIDKELVE 473

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             ++F    +  RR     E +            E+              S +     + 
Sbjct: 474 TAKLFKGP-EFDRRTVLDFEATPITTGAADDGPRER----------KVNASWRLDDRGVF 522

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           +    +  +  +     T  R+   +  G  Y +                   D+    D
Sbjct: 523 SDSHGDLLTSGLGWAVWTDGRVKFTTGAGLPYKIR------------------DIPVAPD 564

Query: 602 IVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVV-- 654
           I       V      L +V+ +G    ++ + +        G   +K+++ + M  V+  
Sbjct: 565 ITGLLRSGVLPDGAHLALVTRRGKILRIDPAAVNPQGAAGNGVAGVKLAAGDPMDTVIAA 624

Query: 655 --KVTGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGV 687
                G+  A+  + E     +  +  IP   R G GV
Sbjct: 625 LPLTCGNDEAILSISEKGW-KVTEVPDIPVKGRGGAGV 661



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 12/129 (9%)

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSE--EKMKLVVKVTGDHVAVVGENRKLLIFS 674
           V + G       + +    R     + V+ +    ++  V   G H+A+V    K+L   
Sbjct: 538 VWTDGRVKFTTGAGLPYKIRD----IPVAPDITGLLRSGVLPDGAHLALVTRRGKILRID 593

Query: 675 IDQIPEMSRGK-GVRLQSYKDGG----ISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
              +        GV       G     +   +          +  + + + +        
Sbjct: 594 PAAVNPQGAAGNGVAGVKLAAGDPMDTVIAALPLTCGNDEAILSISEKGW-KVTEVPDIP 652

Query: 730 LGKRGGVGS 738
           +  RGG G 
Sbjct: 653 VKGRGGAGV 661


>gi|308198935|dbj|BAJ22602.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198951|dbj|BAJ22610.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198955|dbj|BAJ22612.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 188

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 106/186 (56%), Positives = 139/186 (74%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 209 NPEISI 214
           + + S+
Sbjct: 182 SKDASL 187


>gi|7264708|gb|AAF44321.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 95/164 (57%), Positives = 127/164 (77%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPH D +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHDDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
              Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|308198957|dbj|BAJ22613.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 106/186 (56%), Positives = 139/186 (74%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HP
Sbjct: 1   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D
Sbjct: 61  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D
Sbjct: 121 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 180

Query: 209 NPEISI 214
           + + S+
Sbjct: 181 SKDTSL 186


>gi|308072531|dbj|BAJ21888.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 186

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 107/185 (57%), Positives = 139/185 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 1   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 61  GDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN
Sbjct: 121 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDN 180

Query: 210 PEISI 214
            + S+
Sbjct: 181 KDASL 185


>gi|308198931|dbj|BAJ22600.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 106/186 (56%), Positives = 139/186 (74%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HP
Sbjct: 1   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D
Sbjct: 61  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D
Sbjct: 121 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 180

Query: 209 NPEISI 214
           + + S+
Sbjct: 181 SKDASL 186


>gi|154243307|gb|ABS71826.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 98/165 (59%), Positives = 131/165 (79%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VRLAQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  YDTIVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|308198941|dbj|BAJ22605.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198943|dbj|BAJ22606.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198945|dbj|BAJ22607.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198947|dbj|BAJ22608.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198949|dbj|BAJ22609.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198959|dbj|BAJ22614.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198961|dbj|BAJ22615.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 107/186 (57%), Positives = 139/186 (74%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HP
Sbjct: 1   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D
Sbjct: 61  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D
Sbjct: 121 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 180

Query: 209 NPEISI 214
           N + S+
Sbjct: 181 NKDASL 186


>gi|257472172|gb|ACV53927.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472174|gb|ACV53928.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 135/260 (51%), Positives = 186/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ E  LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYES 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   ++    R  +  ++
Sbjct: 240 DRNGMRIVIEIRRDANAHVI 259


>gi|113126858|gb|ABI30277.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243299|gb|ABS71822.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243303|gb|ABS71824.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243305|gb|ABS71825.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 97/165 (58%), Positives = 131/165 (79%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|257472222|gb|ACV53952.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 128/260 (49%), Positives = 185/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKS RIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSGRIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+  NP+I++ +L+E I GPDFPT G ++  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAG-LILGRSGIRKAYET 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   ++    R  + ++L
Sbjct: 240 DRNGMRIVIELRRDANANVL 259


>gi|120406840|ref|YP_956669.1| DNA gyrase/topoisomerase IV subunit A [Mycobacterium vanbaalenii
           PYR-1]
 gi|119959658|gb|ABM16663.1| DNA topoisomerase IV subunit A [Mycobacterium vanbaalenii PYR-1]
          Length = 714

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 176/752 (23%), Positives = 315/752 (41%), Gaps = 70/752 (9%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +      + V   S      +  L +AL ++ +RAIP   DG KP  RR+++ M +  L 
Sbjct: 6   DVPEQNPDLVLDQSADDYWNQYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSKLL 65

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
            G   +KS++I   V G LHPHG  S+Y +   +A  F QR  +I GQG F  I GD  A
Sbjct: 66  PGNKPQKSSKICSAVTGNLHPHGGASMYGAAALMAAEF-QRVKVIDGQGAFPRIQGDIPA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE R++     +   +D  AV    T++ E +EP   P+++P LL NG  GIA G 
Sbjct: 125 ADRYTEMRLSAPGAALTAELDNHAVPMVPTFDGEWTEPTWLPARWPVLLCNGAVGIAEGW 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT +P+HN +E+  A  AL+  P ++ ++L++ I GPD+  G  +V     + E    GR
Sbjct: 185 ATKVPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGATVV-GETGLREYITTGR 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G F VR    V          +VTE+P  V  + + ++I  L+ +  +  + D+ D +  
Sbjct: 244 GQFTVRGTVSV-----DGKNCIVTELPPGVASNTVQDRIRALVESGELSGVADMSDLTDR 298

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +   ++    R    + + E +  L+ +E+ F  ++  L   RVP+   +  ++  +L 
Sbjct: 299 RNGLRIVVTAKRGHSAEQIREQLLALTPLESTFAASLVALDENRVPRWWSVRELISAFLH 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSL 423
            R  V+ RRS +R++ +  R  ++ GL+  +L+ID  +A+IR  +           RF +
Sbjct: 359 LRDSVVVRRSEYRLEKVTARRHLVAGLMTIHLDIDAAVAVIRGSETVDEARQGLQERFGI 418

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
              Q D +L L+LR L KL+  ++++E + L AE  ++  L+ +   +   I  E+ E  
Sbjct: 419 DAEQADYVLALQLRRLTKLDVIELQAEAEKLDAEFAELTELVANPDARRKVIDEELVETA 478

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           ++F        RRT     +    A   +    +  +           + +     + + 
Sbjct: 479 KLF--KGPEFDRRTVLDFDATPVSAGADEDGPRERKVN---------AAWRLDDRGVFSD 527

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
              +  +  +     T  R+   + +G  + +                   D+    DI 
Sbjct: 528 SHGDLLTSGLGWAVWTDGRVKFTTGNGLPFKIR------------------DIPVAPDIT 569

Query: 604 TAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE------KMKL 652
                 V      L +V+ +G    ++ + +        G   +K+++ +          
Sbjct: 570 GLLCSGVLAPGHHLALVTRRGKILRIDPAAVNPQGAAGNGVAGVKLAAGDPEDAVIAALP 629

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           V    G+ +  + E     +  +  IP   R G GV    +  G  + +           
Sbjct: 630 VSCANGEALLSISEKSW-KVTEVADIPVKGRGGAGVGFHPFVKGEDAVLAA--------T 680

Query: 712 IDSAGRSYNRSENDLLGWLGKRG-----GVGS 738
           I + G    +           R      G G 
Sbjct: 681 ISATGYVRGKK----AVRADNRAKASIKGSGV 708


>gi|108802303|ref|YP_642500.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. MCS]
 gi|119871456|ref|YP_941408.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. KMS]
 gi|108772722|gb|ABG11444.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. MCS]
 gi|119697545|gb|ABL94618.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. KMS]
          Length = 711

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 176/698 (25%), Positives = 309/698 (44%), Gaps = 53/698 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++       + V   S         L +AL ++ +RAIP   DG KP  RR+++ M +  
Sbjct: 1   MTAIIEQNPDLVLDQSADDYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSK 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  G   +KS+++   V G LHPHG  S+Y +   +A  F QR  +I GQG F  I GD 
Sbjct: 61  LLPGNKPQKSSKVCSAVTGNLHPHGGASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDI 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++     +   +D  AV    T++ E +EP V P+++P LL NG  GIA 
Sbjct: 120 PAADRYTEMRLSAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAE 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT +P+HN +E+  A  AL+  P ++ ++L++ I GPD+  G  +V     + E    
Sbjct: 180 GWATKVPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGATVV-GETGLREYITT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F VR    V          VVTE+P  V  + + E+I  L+ +  +  + D+ D +
Sbjct: 239 GRGQFTVRGTVTV-----DGKNCVVTELPPGVASNTVQERIRALVESGEMSGVADMSDLT 293

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
              +   ++    R    + + E +  L+ +E+ F  ++  L   RVP+   +  ++  +
Sbjct: 294 DRRNGLRIVVTAKRGHSAEQIREQLLALTPLESTFAASLVALDENRVPRWWSVRELIAAF 353

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRF 421
           L+ R +V+  RS +R++ +  R  ++ GL++ +L+ID  +A+IR  D           RF
Sbjct: 354 LSLRDKVVLHRSEYRLEKVTARRHLVAGLMLIHLDIDAAVAVIRGSDTVDEARQGLQDRF 413

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           ++   Q D +L L+LR L KL+  ++++E + L AE  ++  L+++   +   I  E+ E
Sbjct: 414 AIDAVQADYVLALQLRRLTKLDVIELQAEAERLDAEFAELTELVSNPDARRVVIDKELVE 473

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             ++F    +  RR     E              E+              S +     + 
Sbjct: 474 TAKLFKGP-EFDRRTVLDFEAIPITTGAADDGPRER----------KVNASWRLDDRGVF 522

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           +    +  +  +     T  R+   +  G  Y +                   D+    D
Sbjct: 523 SDSHGDLLTSGLGWAVWTDGRVKFTTGAGLPYKIR------------------DIPVAPD 564

Query: 602 IVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVV-- 654
           I       V      L +V+ +G    ++ + +        G   +K+++ + M  V+  
Sbjct: 565 ITGLLRSGVLPDGAHLALVTRRGKILRIDPAAVNPQGAAGNGVAGVKLAAGDPMDTVIAA 624

Query: 655 --KVTGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGV 687
                G+  A+  + E     +  +  IP   R G GV
Sbjct: 625 LPLTCGNDEAILSISEKGW-KVTEVPDIPVKGRGGAGV 661



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 12/129 (9%)

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSE--EKMKLVVKVTGDHVAVVGENRKLLIFS 674
           V + G       + +    R     + V+ +    ++  V   G H+A+V    K+L   
Sbjct: 538 VWTDGRVKFTTGAGLPYKIRD----IPVAPDITGLLRSGVLPDGAHLALVTRRGKILRID 593

Query: 675 IDQIPEMSRGK-GVRLQSYKDGG----ISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
              +        GV       G     +   +          +  + + + +        
Sbjct: 594 PAAVNPQGAAGNGVAGVKLAAGDPMDTVIAALPLTCGNDEAILSISEKGW-KVTEVPDIP 652

Query: 730 LGKRGGVGS 738
           +  RGG G 
Sbjct: 653 VKGRGGAGV 661


>gi|308198933|dbj|BAJ22601.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 190

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 107/187 (57%), Positives = 141/187 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 3   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 63  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+
Sbjct: 123 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDS 182

Query: 210 PEISIEK 216
            + S+E+
Sbjct: 183 KDASLEE 189


>gi|28372382|gb|AAO38030.1| GyrA [Campylobacter jejuni]
          Length = 181

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 102/177 (57%), Positives = 133/177 (75%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+
Sbjct: 3   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+
Sbjct: 63  YHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
            +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ + 
Sbjct: 123 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDG 179


>gi|145221100|ref|YP_001131778.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium gilvum
           PYR-GCK]
 gi|145213586|gb|ABP42990.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium gilvum
           PYR-GCK]
          Length = 716

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 179/740 (24%), Positives = 318/740 (42%), Gaps = 61/740 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ +     E V   S         L +AL ++ +RAIP   DG KP  RR+++ M E  
Sbjct: 1   MTATIEQNPELVLDQSADEYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHESR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  G   +KS++I   V G LHPHG  S+Y +   +A  F QR  +I GQG F  I GD 
Sbjct: 61  LLPGNKPQKSSKICSAVTGNLHPHGGASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDI 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++     +   +D  AV    T++ E +EP V P+++P LL NG  GIA 
Sbjct: 120 PAADRYTEMRLSAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAE 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT +P+HN +E+  A  AL+  P ++ ++L++ I GPD+  G  ++   + + E    
Sbjct: 180 GWATKVPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGASVI-GTDGLREYITT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F VR    V+    G  CI+ TE+P  V    + ++I  L+ +  +  + D+ D +
Sbjct: 239 GRGLFTVRGTVSVD----GKNCII-TELPPGVASGTVQDRIRALVESGEMAGVADMSDLT 293

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
              +   ++    R    + + + +  L+ +E+ F  ++  L   RVP+   +  ++  +
Sbjct: 294 DRRNGLRIVVTAKRGHSAEQIRDQLLALTPLESSFAASLVALDENRVPRWWSVRELIAAF 353

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRF 421
           L+ R  V+  RS +R++ +  R  ++ GL+  +L+ID  +AIIR  D           RF
Sbjct: 354 LSLRDSVVLHRSEYRLEKVTARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGLQERF 413

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           ++   Q D +L L+LR L KL+  ++++E + L AE   +  L+++   +   I  E+ E
Sbjct: 414 AIDAVQADYVLALQLRRLTKLDVIELQAEAEKLDAEFAALTELVSNPDARRKVIDQELVE 473

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             ++F        RRT     +    A   +    +  +           + +     + 
Sbjct: 474 TAKLF--KGPEYDRRTVLDYDATPVAANNSEDGPRERKVN---------AAWRLDDRGVF 522

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           +       S  +     T  RI   +  G  + +                   D+  + D
Sbjct: 523 SDSHGTLLSSGLGWAVWTDGRIKFTTGGGLPFKIR------------------DIPVSPD 564

Query: 602 IVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV---SSEEKMKLV 653
           I       V      L +++ +G    ++ + +        G   +K+     E+++   
Sbjct: 565 ITGLLQSGVLAPGSHLALITRRGRVLRIDPAAVNPQGAAGNGVAGVKLVADDPEDRVIAA 624

Query: 654 VKV---TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           + V    G+ +  + E     +  +  IP   R G GV    +  G  + +         
Sbjct: 625 LPVSCANGEAILSISEKSW-KVTEVADIPVKGRGGAGVGFHPFGKGEDALLSAA------ 677

Query: 710 TWIDSAGRSYNRSENDLLGW 729
             I + G             
Sbjct: 678 --ISATGYVRGTRTVRAEKR 695



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 12/129 (9%)

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSE--EKMKLVVKVTGDHVAVVGENRKLLIFS 674
           V + G         +    R     + VS +    ++  V   G H+A++    ++L   
Sbjct: 538 VWTDGRIKFTTGGGLPFKIRD----IPVSPDITGLLQSGVLAPGSHLALITRRGRVLRID 593

Query: 675 IDQIPEMSRGK-GVRLQSY----KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
              +        GV          +  +   +      G   +  + +S+ +        
Sbjct: 594 PAAVNPQGAAGNGVAGVKLVADDPEDRVIAALPVSCANGEAILSISEKSW-KVTEVADIP 652

Query: 730 LGKRGGVGS 738
           +  RGG G 
Sbjct: 653 VKGRGGAGV 661


>gi|257472154|gb|ACV53918.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472162|gb|ACV53922.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472166|gb|ACV53924.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472178|gb|ACV53930.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472180|gb|ACV53931.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472182|gb|ACV53932.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472184|gb|ACV53933.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472194|gb|ACV53938.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472202|gb|ACV53942.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472204|gb|ACV53943.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472206|gb|ACV53944.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 131/260 (50%), Positives = 185/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
                 ++    R  + +++
Sbjct: 240 DRTGMRIVIEIRRDANANVI 259


>gi|119444309|gb|ABL75397.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444311|gb|ABL75398.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444313|gb|ABL75399.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444317|gb|ABL75401.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444323|gb|ABL75404.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444331|gb|ABL75408.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444333|gb|ABL75409.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444337|gb|ABL75411.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|119444339|gb|ABL75412.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 131/250 (52%), Positives = 181/250 (72%), Gaps = 1/250 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAEDVRIVLF 314
           S      ++ 
Sbjct: 240 SDRTGMRIVI 249


>gi|298104538|gb|ADI55009.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 160

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 91/160 (56%), Positives = 123/160 (76%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D
Sbjct: 61  HGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLD 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           ++ VD+   Y+  +  P V P+K P LL NG+SGIAVGMA
Sbjct: 121 KETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMA 160


>gi|119444335|gb|ABL75410.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 132/250 (52%), Positives = 183/250 (73%), Gaps = 1/250 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E+I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAEDVRIVLF 314
           S      ++ 
Sbjct: 240 SDRTGMRIVI 249


>gi|31745507|gb|AAP55227.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|119444319|gb|ABL75402.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 130/250 (52%), Positives = 181/250 (72%), Gaps = 1/250 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+++I +L+E I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDMTISELMEVIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 TGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAEDVRIVLF 314
           S      ++ 
Sbjct: 240 SDRTGMRIVI 249


>gi|70671793|gb|AAZ06259.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|70671795|gb|AAZ06260.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|70671797|gb|AAZ06261.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 245

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 133/246 (54%), Positives = 183/246 (74%), Gaps = 1/246 (0%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++
Sbjct: 1   NDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSV 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +
Sbjct: 61  DGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAA 120

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDFPT G I+  R  I +
Sbjct: 121 GIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIRK 179

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+
Sbjct: 180 AYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDL 239

Query: 302 RDESAE 307
           RDES  
Sbjct: 240 RDESDR 245


>gi|119444327|gb|ABL75406.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 131/250 (52%), Positives = 181/250 (72%), Gaps = 1/250 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGIPDLRDE 239

Query: 305 SAEDVRIVLF 314
           S      ++ 
Sbjct: 240 SDRTGMRIVI 249


>gi|255030250|ref|ZP_05302201.1| DNA topoisomerase IV subunit A [Listeria monocytogenes LO28]
          Length = 213

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 93/217 (42%), Positives = 146/217 (67%), Gaps = 4/217 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
           G AT IP HN+ EI EA +  +DNP  + + +++ + 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLCTTDDIMKIVK 213


>gi|119444329|gb|ABL75407.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 132/250 (52%), Positives = 183/250 (73%), Gaps = 1/250 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E+I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAEDVRIVLF 314
           S      ++ 
Sbjct: 240 SDRTGMKIVI 249


>gi|3510606|gb|AAC33552.1| gyrase subunit A [Chlamydia trachomatis]
          Length = 179

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 95/175 (54%), Positives = 123/175 (70%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMA
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMA 179


>gi|124806110|ref|XP_001350630.1| DNA gyrase subunit A;evidence=inferred from direct assay
           [Plasmodium falciparum 3D7]
 gi|23496755|gb|AAN36310.1| DNA gyrase subunit A;evidence=inferred from direct assay
           [Plasmodium falciparum 3D7]
          Length = 1222

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 163/681 (23%), Positives = 300/681 (44%), Gaps = 41/681 (6%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +NI+ S  L++     V +   L + +L+YA   I  R + D RDG K V RRII +M E
Sbjct: 159 NNINESRKLIKGEYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYE 218

Query: 64  MGLDFGAA-FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           +        +KK ARIVGEVIGK HPHGD+SVYD+LVRLAQ       LI G GNFG+++
Sbjct: 219 INKGIDKKGYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIKGYGNFGSVE 278

Query: 123 GDSAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             +AAA RYTEA+++    +++L  ++++ V++   ++  + EP V  SK P LL NG S
Sbjct: 279 Y-NAAAMRYTEAKISSFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLLLINGCS 337

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAV + +SIP HN+ ++    +  + N  I  ++L   I GPDF TGGII+   + +  
Sbjct: 338 GIAVSILSSIPCHNLIDVANCCINFLINENIRDDELFHIIKGPDFSTGGIIISKYDILKN 397

Query: 242 SYRLGRGGFRVRARWCVEEVGRGS----------------------WCIVVTEIPYQVQK 279
            Y  G+G F +R+    E +                            I++  +P  V+ 
Sbjct: 398 IYNSGKGNFEIRSNVFFEYIKNDKKVITKHINDLSSIENSDIDKLTKKIIIKNLPPNVKP 457

Query: 280 SRLIEKIAELIIAKRIPL---LEDIRDESAEDVRIVLFPKNRSLDPDL---LMESIFMLS 333
           + LIE I  L+  K+      L  IRDES ++   ++    +    +     +  +F  +
Sbjct: 458 NELIENIINLLNDKKNEHDNILLRIRDESEKEDMRIVLELKKHSQIEQIHNFLSYLFKYT 517

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
           +M+  +  N   +          L   +K W  +R + +      + + + +++ I+   
Sbjct: 518 NMQISYHCNFVCIGYENTYTQFSLKSFIKLWCNNRIKFIKTNYEIKNKNLQKQLNIIDLY 577

Query: 394 LIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
           LI    I +II   +     +     + + F L   Q+  IL+++L+ L  ++     S+
Sbjct: 578 LIIQNKILDIITFFQKNQNIEQIQLYLKNNFKLNPEQIKYILSIKLQKLINIKNIDFISQ 637

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR-----RRTTFCEVSRA 505
            + ++ + +  D ++N+ +   N I  E+  +K  +       +               +
Sbjct: 638 RNKIMHQIKLNDEIINNVQNIKNLIIQELIYIKNKYGIHNLNKQCIIPSTPKYKYSYINS 697

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +         +       +S      +  +++ DL        D   +  + H    I  
Sbjct: 698 EYHPNFSKNKQIIDTYNTVSTNDNNINHSNYTHDLPNTDNVTKDKNVVETNVHKNIHISS 757

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
             ++    +    +L   +     +        + D     +Y++   L++++  G    
Sbjct: 758 DISNNIKNSDKNSSLTKNQDSDNMMPYRNTYIDSLDNNMKDIYNNDEVLILITYGGYIKK 817

Query: 626 VEESEIIANTRKGKTFLKVSS 646
           ++ +E + N       +K+S+
Sbjct: 818 IKINEKLKNHSN--NIIKLSN 836



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/439 (12%), Positives = 128/439 (29%), Gaps = 22/439 (5%)

Query: 329  IFMLSDMETRFPLNMN-VLSMGRVPQVMPLDGILKEWLAHRREV-LFRRSSFRMQAIDRR 386
             +  S + + +  N +    +      +  +        +  ++      +     ++  
Sbjct: 689  KYKYSYINSEYHPNFSKNKQIIDTYNTVSTNDNNINHSNYTHDLPNTDNVTKDKNVVETN 748

Query: 387  VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
            V     + I+    + I    +N    K           N     L+  ++ +   +E  
Sbjct: 749  VHK--NIHISSDISNNIKNSDKNSSLTKNQDSDNMMPYRNTYIDSLDNNMKDIYNNDEVL 806

Query: 447  IKSELDNLLAEKEKIDSLLNSGKQQWN-----QIACEIREVKEIFSKSTDLGRRRTTFCE 501
            I       + + +  + L N             I  E  E     +K       +    +
Sbjct: 807  ILITYGGYIKKIKINEKLKNHSNNIIKLSNVKYILKENEEKLNENNKRLKFNDLQKGNEQ 866

Query: 502  VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
                D        I         +N     +  +++V L          +K ++     D
Sbjct: 867  EKYKDNEQKLNNDIGHNINIQNNNNDNNNNNNDNNNVLLLNEEEYNSYKIKKSILVRNRD 926

Query: 562  RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSK 620
            +ILL     KA+ L   +L       +   +   ++ +++I     +      L+V S  
Sbjct: 927  KILLTDNYNKAFLLNVYDLHLSSYDSKGTPINQIIHSSKNITGITKFQENKKYLIVCSEN 986

Query: 621  GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680
            G   ++     +   +KG    K               D+  V  +N  ++ F +     
Sbjct: 987  GKMKVINNDVFLKRKKKGIKLFKNKKNIYFSYCNF--NDNCIVGTKNGYIIQFPLSSFKI 1044

Query: 681  MSRGK-GVRLQSY-KDGGISDVICFKICEGLT----WIDSAGRSYNRSENDLLGWLGKRG 734
              +   G +  S  K+  + D++ ++  E        I      + +  N     + K+ 
Sbjct: 1045 SKKNSLGNKCISLAKNDKVVDLLSYENNEKNLKNYKIIFVTKNGFGKMINLNELKIQKKK 1104

Query: 735  GVGSLVPKG----FPRSGK 749
            G G  + K       +  K
Sbjct: 1105 GKGHRIMKFKKSKTRKDNK 1123



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/388 (10%), Positives = 116/388 (29%), Gaps = 26/388 (6%)

Query: 276  QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
             V K + + +            + +    S ++  +     + ++ P        + ++M
Sbjct: 737  NVTKDKNVVETNVHKNIHISSDISNNIKNSDKNSSLTKNQDSDNMMPYRNTYIDSLDNNM 796

Query: 336  ETRFP--LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +  +     + +++ G   + + ++  LK    +  ++   +   +           +  
Sbjct: 797  KDIYNNDEVLILITYGGYIKKIKINEKLKNHSNNIIKLSNVKYILKENEEKLNENNKRLK 856

Query: 394  LIAYLNIDEIIA----IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                   +E         +  +     +  + +  +N  +   N  +  L + E    K 
Sbjct: 857  FNDLQKGNEQEKYKDNEQKLNNDIGHNINIQNNNNDNNNNNNDNNNVLLLNEEEYNSYKI 916

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
            +   L+  ++KI    N  K     +        +      +     +           T
Sbjct: 917  KKSILVRNRDKILLTDNYNKAFLLNVYDLHLSSYDSKGTPINQIIHSSKNI--------T 968

Query: 510  LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE---GDSLKIALHAHTTDRILLL 566
                  E +   +V S  G ++ + +           +           + +  D  ++ 
Sbjct: 969  GITKFQENKKYLIVCSENGKMKVINNDVFLKRKKKGIKLFKNKKNIYFSYCNFNDNCIVG 1028

Query: 567  STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSK 620
            + +G     P  +    + +       I L  N  +V    Y++  K      ++ V+  
Sbjct: 1029 TKNGYIIQFPLSSFKISKKNSLGN-KCISLAKNDKVVDLLSYENNEKNLKNYKIIFVTKN 1087

Query: 621  GNAFIVEESEIIANTRKGK--TFLKVSS 646
            G   ++  +E+    +KGK    +K   
Sbjct: 1088 GFGKMINLNELKIQKKKGKGHRIMKFKK 1115


>gi|257472176|gb|ACV53929.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 131/260 (50%), Positives = 185/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDHPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
                 ++    R  + +++
Sbjct: 240 DRTGMRIVIEIRRDANANVI 259


>gi|119444321|gb|ABL75403.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 133/250 (53%), Positives = 183/250 (73%), Gaps = 1/250 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E+I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITISELMEFIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +++   G   IVVTEIPYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIDQTSSGKERIVVTEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAEDVRIVLF 314
           S      ++ 
Sbjct: 240 SDRTGMRIVI 249


>gi|154243301|gb|ABS71823.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 96/165 (58%), Positives = 130/165 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF   Y L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  YDTIVRMAQPFSLCYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|221061465|ref|XP_002262302.1| dna gyrase a-subunit [Plasmodium knowlesi strain H]
 gi|193811452|emb|CAQ42180.1| dna gyrase a-subunit, putative [Plasmodium knowlesi strain H]
          Length = 1173

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 160/685 (23%), Positives = 296/685 (43%), Gaps = 41/685 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D +  S   ++     V +   L + +L+YA   I  R + D RDG K V RRII +M 
Sbjct: 159 SDLVDESIRGIKGEYHDVEICDLLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMY 218

Query: 63  EMGLDFGAA-FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           E+      + +KK ARIVGEVIGK HPHGD+SVYD+LVRLAQ       LI+G GNFG++
Sbjct: 219 EINKGAEKSSYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLINGYGNFGSV 278

Query: 122 DGDSAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +  +AAA RYTEA+++    +++L  ++++ +++   ++  + EP V  SK P LL NG 
Sbjct: 279 EY-NAAAMRYTEAKVSNFCYDILLDEINDENIEYVRNFDGNEVEPKVLCSKVPLLLINGC 337

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAV + ++IP HN+ ++    ++ + +  I  ++L   I GPDF TGGII+     + 
Sbjct: 338 SGIAVSILSNIPCHNLVDVINCTISFLLDANIRDDELAAIIKGPDFSTGGIIISKASQLQ 397

Query: 241 ESYRLGRGGFRVRARWCVEEVGR----------------------GSWCIVVTEIPYQVQ 278
             Y+ G+G   +R+   +E                          GS  +V+  +P  V+
Sbjct: 398 NVYQTGKGNIEIRSNVFLEYTKNDKVQVIHVNDLPNVNAEDIDTRGSKKLVIKNLPPNVK 457

Query: 279 KSRLIEKIAELIIAKRIPL---LEDIRDESAEDVRIVLFPKNRSLDPDLLME---SIFML 332
            + LIE +  ++  K+      L+ IRDES ++   ++    ++   + + +    IF  
Sbjct: 458 PNELIENMINILNEKKNEHENILQKIRDESEKEDMRIVLELRKNSQVEQINDFVSFIFKY 517

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           + M+  +  N   +          L   L+ W  +R   + +  + + Q + + + I+  
Sbjct: 518 TQMQITYHCNFVCIGHQNSYTQFSLKSFLQLWCENRINFIKKNLTIKNQNLQKELHIIDL 577

Query: 393 LLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
            ++    I EII+ ++     +         F L + Q+  IL+++++ L  ++     +
Sbjct: 578 YILIQKKILEIISFLQKNQNIEEIKNFFKENFKLNDYQIHHILSMKIQKLVNIKNVDFCT 637

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
             + +LA  E+   L+++  +    I  ++  +K  +    +   R      V       
Sbjct: 638 HKEQILARMEQNRDLISNVDKIKRLIIDQLTYIKNKYG--INSVGRFAPPQSVKYRYVYI 695

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
                        +            +  D   L  +   S K  L     ++    +  
Sbjct: 696 NPPERNHHFKEHSLALVNAERDGPSGYGGDAEDLKGERKISKKDTLSDEIRNQEEQQTPV 755

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
                  A NL   +      Q       +       VY++   L++++  G    ++ +
Sbjct: 756 EDPALPKARNLRGVKKIDPTTQYRQTYIDSIHTDVKNVYNNDYVLVLITYGGYVKKIKVA 815

Query: 630 EIIANTRKGKTFLK-----VSSEEK 649
           E + N +     L      +   E+
Sbjct: 816 EKLKNHQNNIIKLSNVKYILKENEE 840



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 68/194 (35%), Gaps = 9/194 (4%)

Query: 557  AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-KLL 615
                D++LL  +  KAY L   +L +     +   +   ++ +++I     ++     L+
Sbjct: 887  CRNKDKLLLTDSQNKAYILNVYDLQTSSYDSKGTPINQVIHCSKNITGMTKFEENKKYLI 946

Query: 616  VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
            V S  G   ++     +   +KG    K   +           D+  V   +  ++ F +
Sbjct: 947  VCSENGKMKVINNDVFLKKKKKGIRLFKNKKDIHFSYCNF--SDNCIVGTASGHIIQFPL 1004

Query: 676  DQIPEMSRGK-GVRLQSY-KDGGISDVICFKICE----GLTWIDSAGRSYNRSENDLLGW 729
                   +   G +  +  K+  + D++ +   E        I  +   + +  N     
Sbjct: 1005 ANFKISKKNSLGNKCINLGKNDKVVDLLAYDNDEKNVGNFQIIFLSKGGHGKMINLEELK 1064

Query: 730  LGKRGGVGSLVPKG 743
            + K+ G G  + K 
Sbjct: 1065 VQKKKGKGYKIMKF 1078


>gi|308072529|dbj|BAJ21887.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 105/181 (58%), Positives = 136/181 (75%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHG
Sbjct: 1   LDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D
Sbjct: 61  DTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKD 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN 
Sbjct: 121 TVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNK 180

Query: 211 E 211
           +
Sbjct: 181 D 181


>gi|119444315|gb|ABL75400.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 130/244 (53%), Positives = 178/244 (72%), Gaps = 1/244 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GR    +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRSSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAED 308
           S   
Sbjct: 240 SDRT 243


>gi|118566971|gb|ABL01796.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 95/163 (58%), Positives = 127/163 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|31745481|gb|AAP55214.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|31745483|gb|AAP55215.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 163

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|284049781|emb|CBJ15408.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 186

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 108/186 (58%), Positives = 147/186 (79%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S    RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVFVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEY 220
           ++L+EY
Sbjct: 181 QELMEY 186


>gi|31745489|gb|AAP55218.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745501|gb|AAP55224.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|308198965|dbj|BAJ22617.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 188

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 105/184 (57%), Positives = 138/184 (75%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHG
Sbjct: 4   LDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHG 63

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D
Sbjct: 64  DIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKD 123

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ 
Sbjct: 124 TVDFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSK 183

Query: 211 EISI 214
           + S+
Sbjct: 184 DASL 187


>gi|118566965|gb|ABL01793.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 128/163 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDPAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|118566973|gb|ABL01797.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 95/163 (58%), Positives = 128/163 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|119444325|gb|ABL75405.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 130/250 (52%), Positives = 181/250 (72%), Gaps = 1/250 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     ++KSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKPYEKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGIPDLRDE 239

Query: 305 SAEDVRIVLF 314
           S      ++ 
Sbjct: 240 SDRTGMRIVV 249


>gi|116486983|emb|CAJ38778.1| DNA gyrase subunit A [Mesorhizobium sp. Cc3]
          Length = 212

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 118/213 (55%), Positives = 156/213 (73%), Gaps = 1/213 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +  R PL
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           I GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF+DTY+  D+EP V P++
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEPKVLPAR 120

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FPNLL NG+ GIAVGMAT+IP HN+ E+C AA+A+IDNP I +  L+E I GPDFPTGGI
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNAAIAVIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           ++  R  I  +Y  GRG   +R +  +E+ G  
Sbjct: 181 VL-GRSGIYSAYSTGRGSIVMRGKVNIEQRGND 212


>gi|257472208|gb|ACV53945.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 131/260 (50%), Positives = 184/260 (70%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDQPNKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
                 ++    R  + +++
Sbjct: 240 DRTGMRIVIEIRRDANANVI 259


>gi|118566967|gb|ABL01794.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 128/163 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|82793752|ref|XP_728165.1| DNA gyrase subunit A [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484380|gb|EAA19730.1| DNA gyrase subunit a-related [Plasmodium yoelii yoelii]
          Length = 968

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 159/703 (22%), Positives = 307/703 (43%), Gaps = 51/703 (7%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           + +  L++     V +   L + +L+YA   I  R + D RDG K V RRII +M E+  
Sbjct: 177 NPNKKLIKGEYYDVEICELLSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINK 236

Query: 67  DFGAA-FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK ARIVGEVIGK HPHGD+SVYD+LVRLAQ       LI+G GNFG+++  +
Sbjct: 237 GSDRKSYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNVLINGYGNFGSVEY-N 295

Query: 126 AAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           AAA RYTEAR++    +++L  ++++ VD+   ++  + EP V  SK P LL NG SGIA
Sbjct: 296 AAAMRYTEARISDFCYDVLLDEINDENVDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIA 355

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           V + T+IPSHN+ ++  A++  + N +I+ ++L   I GPDF TGGII+  ++++   Y 
Sbjct: 356 VSILTNIPSHNLVDVINASINFLINEKITNDELFNLIKGPDFSTGGIIITKKDALRNIYN 415

Query: 245 LGRGGFRVRARW-------------CVEE---------VGRGSWCIVVTEIPYQVQKSRL 282
            G+G   +R+                + E           + S  +++  +P  V+ + L
Sbjct: 416 TGKGSIVIRSNVFYEYVRNNKTYIHHINELSNLENLECDNKSSKKLIIKNLPPNVKPNEL 475

Query: 283 IEKIAELIIAKRIPL---LEDIRDESAEDVRIVLFPKNRSLDPDL---LMESIFMLSDME 336
           IE I  ++  ++      L  IRDES ++   ++    +    +     +  +F  + ME
Sbjct: 476 IENIVTVLNERKNEHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLFKYTSME 535

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
             +  N   +          L   L+ W  +R + + +    +   + + + I+   L  
Sbjct: 536 INYHCNFVCIGYENSYTQFSLKPFLQLWCENRIKFIKKNYKIKNNNLQKELNIIDLYLTI 595

Query: 397 YLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
              I +II+ +         +  + S F L E+Q+  IL+++++ L  ++      + +N
Sbjct: 596 QKKILDIISFLHKNQNIEQIQNYLKSNFKLNEDQIKYILSMKIQKLINIKNINFDIQKNN 655

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++ + +    ++++ ++    I  E+  +K  +S S  +  +     + S  +       
Sbjct: 656 IIKKIKSNQYIIDNVQEIKQIIINELIHIKNKYSLSKKILPQPQLKYKYSYINGDLNLLN 715

Query: 514 MIEKEPITVVI---SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
             +K          +      ++       +       ++  +          +      
Sbjct: 716 TSQKYDEDNTKNGVNKFSIAPNMGGKGGGQTDDTTNGQNNKILESGEKGNKNEVEKGNKN 775

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF---------VYDSTCKLLVVSSKG 621
           +        +  G  +        ++ +     T           +Y++   L++++  G
Sbjct: 776 EVEKGNKNEVEKGNKNEVEKGNKNEVENENYRNTYIDSLDTTFKDIYNNDDVLILITYGG 835

Query: 622 NAFIVEESEIIANTRKGKTFLK-----VSSEEKMKLVVKVTGD 659
               ++ ++ + N       L      +   E+ K V K   +
Sbjct: 836 YIKKIKINDKLKNNVNNIMKLSNAKYILKEIEETKNVKKTNNE 878


>gi|29602635|gb|AAO85704.1| GyrA [Campylobacter jejuni]
          Length = 178

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 101/178 (56%), Positives = 133/178 (74%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F K
Sbjct: 1   SDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVK 60

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA
Sbjct: 61  SARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEA 120

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP
Sbjct: 121 KMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIP 178


>gi|329124299|gb|AEB72027.1| DNA gyrase subunit A [Aeromonas sp. A1(2011)]
          Length = 158

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 90/158 (56%), Positives = 120/158 (75%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            Y  YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HP
Sbjct: 1   SYADYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D
Sbjct: 61  HGDVAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLD 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           ++ VD+   Y+  +  P V P+K PNLL NG+SGIAVG
Sbjct: 121 KETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVG 158


>gi|118566969|gb|ABL01795.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 128/163 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|31745491|gb|AAP55219.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|31745497|gb|AAP55222.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|118566975|gb|ABL01798.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 95/163 (58%), Positives = 127/163 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|21327937|dbj|BAC00774.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 177

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 102/177 (57%), Positives = 139/177 (78%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK HPHGD  +Y+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDLPIYEAMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+ +++D +DF D Y+ 
Sbjct: 61  MAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
            + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+L  NP+ISI +L
Sbjct: 121 NEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAEL 177


>gi|31745493|gb|AAP55220.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745495|gb|AAP55221.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745503|gb|AAP55225.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|116486981|emb|CAJ38776.1| DNA gyrase subunit A [Mesorhizobium sp. Ca004]
          Length = 212

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 116/213 (54%), Positives = 155/213 (72%), Gaps = 1/213 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +  R PL
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           I GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF++TY+  D+EP V P++
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQETYDASDTEPKVLPAR 120

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E I GPDFPTGGI
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           ++  R  I  +Y  GRG   +R +  +E+ G  
Sbjct: 181 VL-GRSGIYSAYSTGRGSIVMRGKVNIEQRGND 212


>gi|116486985|emb|CAJ38780.1| DNA gyrase subunit A [Mesorhizobium tianshanense]
          Length = 212

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 117/208 (56%), Positives = 152/208 (73%), Gaps = 1/208 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +  R PL
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           I GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D++ VDF+DTY+   SEP V P++
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKETVDFQDTYDASGSEPKVLPAR 120

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+ALIDNP I +  L+E I GPDFPTGGI
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIALIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVE 259
           ++  R  I  +Y  GRG   +R R  +E
Sbjct: 181 VL-GRSGIYSAYSTGRGSIVMRGRVNIE 207


>gi|301014718|gb|ADK47158.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 166

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 96/166 (57%), Positives = 129/166 (77%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD+
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDT 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  IVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    
Sbjct: 121 YDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGC 166


>gi|308072560|dbj|BAJ21897.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 105/183 (57%), Positives = 137/183 (74%)

Query: 32  AYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGD 91
            Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD
Sbjct: 1   DYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGD 60

Query: 92  QSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D 
Sbjct: 61  IAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDT 120

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN +
Sbjct: 121 VDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKD 180

Query: 212 ISI 214
            S+
Sbjct: 181 ASL 183


>gi|31745509|gb|AAP55228.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|31745505|gb|AAP55226.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 129/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|308072574|dbj|BAJ21904.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072576|dbj|BAJ21905.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198973|dbj|BAJ22621.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198987|dbj|BAJ22628.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198993|dbj|BAJ22631.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198995|dbj|BAJ22632.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198997|dbj|BAJ22633.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198999|dbj|BAJ22634.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199013|dbj|BAJ22641.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199047|dbj|BAJ22658.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 104/182 (57%), Positives = 137/182 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDT 180

Query: 213 SI 214
           S+
Sbjct: 181 SL 182


>gi|308072558|dbj|BAJ21896.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072566|dbj|BAJ21900.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072568|dbj|BAJ21901.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198969|dbj|BAJ22619.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198977|dbj|BAJ22623.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198981|dbj|BAJ22625.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198983|dbj|BAJ22626.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199001|dbj|BAJ22635.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199017|dbj|BAJ22643.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199021|dbj|BAJ22645.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199025|dbj|BAJ22647.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 104/182 (57%), Positives = 137/182 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 SI 214
           S+
Sbjct: 181 SL 182


>gi|308199027|dbj|BAJ22648.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199033|dbj|BAJ22651.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199049|dbj|BAJ22659.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 104/182 (57%), Positives = 137/182 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 SI 214
           S+
Sbjct: 181 SL 182


>gi|308072562|dbj|BAJ21898.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072564|dbj|BAJ21899.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072570|dbj|BAJ21902.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072572|dbj|BAJ21903.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072580|dbj|BAJ21907.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198985|dbj|BAJ22627.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198991|dbj|BAJ22630.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199005|dbj|BAJ22637.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199009|dbj|BAJ22639.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199011|dbj|BAJ22640.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199015|dbj|BAJ22642.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199037|dbj|BAJ22653.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199043|dbj|BAJ22656.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199045|dbj|BAJ22657.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199051|dbj|BAJ22660.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 105/182 (57%), Positives = 137/182 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 213 SI 214
           S+
Sbjct: 181 SL 182


>gi|308199039|dbj|BAJ22654.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199055|dbj|BAJ22662.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 105/182 (57%), Positives = 137/182 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 213 SI 214
           S+
Sbjct: 181 SL 182


>gi|308199003|dbj|BAJ22636.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199019|dbj|BAJ22644.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 104/182 (57%), Positives = 137/182 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 SI 214
           S+
Sbjct: 181 SL 182


>gi|308199053|dbj|BAJ22661.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 104/182 (57%), Positives = 137/182 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 SI 214
           S+
Sbjct: 181 SL 182


>gi|308199029|dbj|BAJ22649.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199031|dbj|BAJ22650.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 181

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 103/179 (57%), Positives = 135/179 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ +
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKD 179


>gi|308198979|dbj|BAJ22624.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 104/179 (58%), Positives = 135/179 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN +
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKD 179


>gi|308198989|dbj|BAJ22629.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199007|dbj|BAJ22638.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199059|dbj|BAJ22664.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 181

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 104/179 (58%), Positives = 135/179 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN +
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKD 179


>gi|329124303|gb|AEB72029.1| DNA gyrase subunit A [Aeromonas sp. A7(2011)]
          Length = 158

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 90/157 (57%), Positives = 119/157 (75%)

Query: 32  AYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGD 91
            YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD
Sbjct: 1   DYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGD 60

Query: 92  QSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ 
Sbjct: 61  IAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKET 120

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           VD+   Y+  +  P V P+K PNLL NG+SGIAVG  
Sbjct: 121 VDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGWG 157


>gi|308072578|dbj|BAJ21906.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 104/179 (58%), Positives = 135/179 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN +
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKD 179


>gi|18476193|gb|AAL05404.1| DNA topoisomerase IV subunit C [Enterobacter aerogenes]
          Length = 188

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 93/188 (49%), Positives = 139/188 (73%), Gaps = 1/188 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ AEL+L  + +  VD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELGQGTVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ L++ P+ +
Sbjct: 121 WVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAITLLEKPKTT 180

Query: 214 IEKLLEYI 221
           +++LL+ +
Sbjct: 181 LDELLDIV 188


>gi|308198975|dbj|BAJ22622.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 103/182 (56%), Positives = 137/182 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY++LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYNALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 SI 214
           S+
Sbjct: 181 SL 182


>gi|190888720|gb|ACE95985.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888722|gb|ACE95986.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888724|gb|ACE95987.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888726|gb|ACE95988.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888728|gb|ACE95989.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888730|gb|ACE95990.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 92/162 (56%), Positives = 123/162 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|331668933|ref|ZP_08369781.1| DNA gyrase subunit A [Escherichia coli TA271]
 gi|331064127|gb|EGI36038.1| DNA gyrase subunit A [Escherichia coli TA271]
          Length = 167

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 82/157 (52%), Positives = 115/157 (73%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKS
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
           + ++A  ++  ++++ VDF D Y+  +  P     KF
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKFPTSCQPKF 163


>gi|190888708|gb|ACE95979.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888718|gb|ACE95984.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 92/162 (56%), Positives = 124/162 (76%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL +   ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTYDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|73916132|gb|AAZ92934.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 639

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 150/577 (25%), Positives = 264/577 (45%), Gaps = 29/577 (5%)

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   +R+
Sbjct: 1   NLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIVLRS 59

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +    + 
Sbjct: 60  RTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVI 119

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV+ R
Sbjct: 120 EVKRDASANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 178

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q  AI
Sbjct: 179 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQAI 238

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS    
Sbjct: 239 LDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD--- 295

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
             +RRT    +     +   + +IE+  + + +SNRG+I+          K     +   
Sbjct: 296 --KRRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGT 351

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
             K+ D ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ ++ 
Sbjct: 352 GVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDES 411

Query: 602 IVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           I T    +        L   +  G        E     + G   L +  E+++  V+   
Sbjct: 412 IQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAE 471

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           GD  + +  +    + F+   +  MSR   GV+  + ++G         I +    +   
Sbjct: 472 GDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVLIIT 530

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +           RGG G    K   ++G    
Sbjct: 531 EKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAG 567


>gi|190888706|gb|ACE95978.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888712|gb|ACE95981.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888714|gb|ACE95982.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 91/162 (56%), Positives = 123/162 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           + +D+D VDF D Y+  + EP+V PS FPNLLANG+SGIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVG 162


>gi|156103257|ref|XP_001617321.1| DNA GyrAse a-subunit [Plasmodium vivax SaI-1]
 gi|148806195|gb|EDL47594.1| DNA GyrAse a-subunit, putative [Plasmodium vivax]
          Length = 1263

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 147/524 (28%), Positives = 253/524 (48%), Gaps = 34/524 (6%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            +++  S   ++     V +   L + +L+YA   I  R + D RDG K V RRII +M 
Sbjct: 136 SNHVGESIKRIKGEYYDVEICELLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMY 195

Query: 63  EMGLDFGAA-FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           E+        +KK ARIVGEVIGK HPHGD+SVYD+LVRLAQ       LI+G GNFG++
Sbjct: 196 EINKGAEKRSYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQRHHNSNVLINGYGNFGSV 255

Query: 122 DGDSAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +  +AAA RYTEA+++    +++L  ++E+ V++   ++  + EP VF SK P LL NG 
Sbjct: 256 EY-NAAAMRYTEAKISNFCYDVLLDEINEENVEYVRNFDGNEIEPKVFCSKVPLLLINGC 314

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAV + ++IP HN+ ++    ++ + NP I  + L   I GPDF TGGII+     + 
Sbjct: 315 SGIAVSILSNIPCHNLVDVINCTISFLLNPSIREDHLSAIIKGPDFTTGGIIISKPNELQ 374

Query: 241 ESYRLGRGGFRVRARWCVEEVG----------------------RGSWCIVVTEIPYQVQ 278
             Y  GRG   +R+   +E                         RGS  +V+  +P  V+
Sbjct: 375 NVYHTGRGSIEIRSNVFLEYTKDDKQYVTHVNNLANLHPEDIDSRGSKKLVIKNLPPNVK 434

Query: 279 KSRLIEKIAELIIAKRIPL---LEDIRDESAEDVRIVLFPKNRSLDPDLLME---SIFML 332
            + LIE +  ++  K+      L+ IRDES ++   ++    ++   + + +    IF  
Sbjct: 435 PNELIENMINILNEKKNEHENILQKIRDESEKEDMRIVLELRKNTQVEQINDFLSFIFKY 494

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           + M+T +  N   +          L   L+ W  +R + +    + + + + + + I+  
Sbjct: 495 TQMQTTYHCNFVCIGHQNSYTQFSLKSFLQLWCENRIKFIRNNLTIKNKNLQKELHIIDL 554

Query: 393 LLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
            ++    I EII+ ++     +         F L + Q+  IL+++++ L  ++      
Sbjct: 555 YILIQKKILEIISFLQKNQNIEEIKNFFKKNFQLNDYQIQHILSMKIQKLVNIKNVHFGP 614

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
             + +L        L+    +    I  E+  +K  +  S+   
Sbjct: 615 HKEKILTRMRDNRDLIADVDRIKRLIIEELAYIKNKYGTSSAGR 658



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/445 (10%), Positives = 116/445 (26%), Gaps = 29/445 (6%)

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
              D       ++                + +     ++                      
Sbjct: 718  DPDEERTWEEQHMGEQHIGEQHIEEQHIEEQHIEEQHI-----EEQHIEEQHIEEQHIEE 772

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             H  E          Q I+ +  I +  +             R               T+
Sbjct: 773  QHIEEQHIEEQHIEEQHIEEQ-HIEEQHIEEVDPPLPKGKNER-GVHHTGGTQRGAKETD 830

Query: 426  NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                   +  +  +    +    ++   +L         +   ++  N     I+     
Sbjct: 831  PPPVHYRHTYIDCVHADVKDVYNNDHVLVLITYGGYVKKIKVAEKLKNHQNNTIKLSNVK 890

Query: 486  FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
            +    +  RR            +             V  S+     +  +++ +   +  
Sbjct: 891  YILKENEERRL-----NVGGAASGAASGEDSGGENGVATSSANPTSANTANAANCYKVKK 945

Query: 546  KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
                     +     DR+LL  +  KAY L   +L +     +   +   ++ ++ I   
Sbjct: 946  S--------ILCRNKDRLLLTDSQNKAYVLDVCDLQTSSYDSKGTPINQVVHCSKSITGM 997

Query: 606  FVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
              ++     L+V S  G   I+     +   +KG    K   +           D+  V 
Sbjct: 998  AKFEESKKYLIVCSENGKMKIINNDVFLKKKKKGIRLFKNKKDIHFSYCNF--SDNCIVG 1055

Query: 665  GENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGL----TWIDSAGRS 718
              +  ++ F +       +   G +  S  K+  + D++ ++  E        I  +   
Sbjct: 1056 TASGHIIQFPLSNFKISKKNSLGNKCISLGKNDKVVDLLTYENDEKSVKKFQIIFLSKGG 1115

Query: 719  YNRSENDLLGWLGKRGGVGSLVPKG 743
            + +  N     + KR G G  + K 
Sbjct: 1116 HGKMVNLGELKVQKRRGKGYKIMKF 1140


>gi|190888716|gb|ACE95983.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 92/162 (56%), Positives = 124/162 (76%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL +   ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLIYDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|89101241|ref|ZP_01174065.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
 gi|89084047|gb|EAR63224.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
          Length = 198

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 86/193 (44%), Positives = 126/193 (65%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E  + + L   L +R+  Y+   I++RA+PD+RDG KPV RRI++AM   G      F
Sbjct: 6   SAEKFRDLPLEDVLGDRFGRYSKYIIQDRALPDVRDGLKPVQRRILYAMHVEGNTNEKGF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG VIG  HPHGD SVYD++VR++Q +  R  L+   GN G+IDGD  AA RYT
Sbjct: 66  RKSAKTVGNVIGNYHPHGDSSVYDAMVRMSQDWKVRNFLVEMHGNNGSIDGDPPAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ ++  +L+ +++  VDF   +++  SEP V P+ FPNLL NG++GI+ G AT IP
Sbjct: 126 EARLSAISSELLRDIEKHTVDFIPNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATEIP 185

Query: 193 SHNVQEICEAALA 205
            H++ EI +  + 
Sbjct: 186 PHHLGEIIDGVIM 198


>gi|259014742|gb|ACV88661.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 173

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 94/173 (54%), Positives = 135/173 (78%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           D+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ 
Sbjct: 1   DVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQD 60

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF+  ++E   E
Sbjct: 61  FSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           P V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + LIDNPE S++ L
Sbjct: 121 PSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSVDDL 173


>gi|330939845|gb|EGH43078.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 578

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 182/584 (31%), Positives = 320/584 (54%), Gaps = 22/584 (3%)

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NGT+GIAVGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R 
Sbjct: 1   NGTTGIAVGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRA 60

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            +++ Y  GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P+
Sbjct: 61  DLLKIYETGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPM 115

Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           + D+RDES  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+ 
Sbjct: 116 VADLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLK 175

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  +L EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK 
Sbjct: 176 NLKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA 235

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            +++RF L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +
Sbjct: 236 ELIARFDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLV 295

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E+    E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K 
Sbjct: 296 RAELIADAETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKG 349

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H +D + L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   + 
Sbjct: 350 HDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQ 409

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
                      + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   
Sbjct: 410 PPPGATFECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRP 469

Query: 656 VTG---DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKIC 706
           V     + +A V    +LL+F I  +P++ +GKG ++       ++        +     
Sbjct: 470 VPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQ 529

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                + +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 530 GATLVLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 573


>gi|190888750|gb|ACE96000.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 92/162 (56%), Positives = 123/162 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDIAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|190888710|gb|ACE95980.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888736|gb|ACE95993.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888738|gb|ACE95994.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888740|gb|ACE95995.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888742|gb|ACE95996.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888744|gb|ACE95997.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888746|gb|ACE95998.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 92/162 (56%), Positives = 122/162 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y ++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|21327935|dbj|BAC00773.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 199

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 96/199 (48%), Positives = 140/199 (70%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+KSA+ V
Sbjct: 1   LSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +
Sbjct: 61  GDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLL 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP HN+ E+
Sbjct: 121 AEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNLAEV 180

Query: 200 CEAALALIDNPEISIEKLL 218
            +A L  IDNP+I++ +L+
Sbjct: 181 IQATLKYIDNPDITVNQLM 199


>gi|1405716|emb|CAA97570.1| gyrase A subunit [Haemophilus influenzae]
          Length = 171

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 83/174 (47%), Positives = 120/174 (68%), Gaps = 3/174 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANG 171


>gi|289804388|ref|ZP_06535017.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 161

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 95/161 (59%), Positives = 128/161 (79%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++
Sbjct: 1   VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTI 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y
Sbjct: 61  VRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 DGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 161


>gi|225851095|ref|YP_002731329.1| DNA gyrase subunit A [Persephonella marina EX-H1]
 gi|225644811|gb|ACO02997.1| DNA gyrase subunit A [Persephonella marina EX-H1]
          Length = 1217

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 169/628 (26%), Positives = 303/628 (48%), Gaps = 34/628 (5%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T++A  +L  +D++ VD ++ ++    EP V P+KFPNL+ NG SGIAVG++T+I
Sbjct: 534  TEARLTKLAMEMLADIDKNTVDMKENFDASLMEPEVLPAKFPNLICNGASGIAVGLSTNI 593

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P HN  E+ EA   L + P  ++E+L ++I GPDFPTGGI++   E IV+ Y  GRG   
Sbjct: 594  PPHNFSEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILITPFEEIVKIYTDGRGSVT 653

Query: 252  VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
            V+ +  +E +      I++ EIPYQV K  LI++IAEL+   +   + D+RDES  D   
Sbjct: 654  VKGKARIERLPGNRHRIIIYEIPYQVNKVELIKRIAELVRKGQEKGISDLRDESDRDGIR 713

Query: 312  VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            ++    R  DP+ +++ ++  + ++   P+N+ VL  G+ P+ + L G+L+E++ HR +V
Sbjct: 714  IVVELKREADPEKVLKKLYRRTQLQKSIPINLTVLV-GKQPKTVDLKGLLQEFIKHRVDV 772

Query: 372  LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
            + RR+ F ++  + R+ I++GLL A  N D +I I+R+       +  +V  F L++ Q 
Sbjct: 773  ITRRTLFDLEKAENRLHIVEGLLKALENADRVIDIVRSSKDVSSARSQLVEEFELSDTQA 832

Query: 429  DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             AIL++RL     LE  ++  E D+L  + E+   +L+S +++      EI E+ E F  
Sbjct: 833  QAILDMRLSRFTALEGDKLYQEADDLRLKIEEYQRILSSEEEKIRVFIEEIDELLEKFGD 892

Query: 489  STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL----H 544
                  R+T   E   A     +  ++       +++ R    + K              
Sbjct: 893  E-----RKTVIVEEKEAGLTFEEHYILAVLSSGRILNRRIDDDADKKDIFQKVMNEVVSS 947

Query: 545  FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
             K G+ L       ++  I  ++  GKAY     +           +  I+++  + + T
Sbjct: 948  VKPGEKLISVQEVESSIPIAFITDKGKAYWSLVAD-------LPKGEGRINIDEGEIVGT 1000

Query: 605  AFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--- 660
            AF  +    +L +++  G    +   +I   ++   + + ++ ++ +        DH   
Sbjct: 1001 AFKGEGEEDRLFILTKNGIIKRMSYEDIFYKSQN-HSIIPLAEDDCVVTAFA--DDHPSL 1057

Query: 661  VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            + V      LL+F  +Q+     + KGV      +G       F I      +      Y
Sbjct: 1058 IGVYTRKGDLLLFERNQVRVTGDKAKGVEAIDLDEGDTV-AGGFLINSEDLIMTVTKNGY 1116

Query: 720  NRSENDLLGW-----LGKRGGVGSLVPK 742
             +       +     + KR   G +  K
Sbjct: 1117 TKLVRKEEFFTKEGKVKKRAQKGLMAVK 1144



 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 70/117 (59%), Positives = 86/117 (73%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             +    +   ++  YL YA+S I  RAIPD+RDG KPV RRI++AM+E+GL     +KK
Sbjct: 2   SEIIKQPIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMNELGLYPNKPYKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           SAR+VGEV+GK HPHGD SVYD+LVR+AQ F  RYPLI GQGNFG+IDGD  AA RY
Sbjct: 62  SARVVGEVLGKYHPHGDTSVYDALVRMAQDFTLRYPLIQGQGNFGSIDGDPPAAMRY 118



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 10/102 (9%)

Query: 594  IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN-------TRKGKTFLKVSS 646
            IDL+    +   F+ +S   ++ V+  G   +V + E            +KG   +K+  
Sbjct: 1088 IDLDEGDTVAGGFLINSEDLIMTVTKNGYTKLVRKEEFFTKEGKVKKRAQKGLMAVKLGK 1147

Query: 647  EEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ--IPEMSRGK 685
            ++ + + V V  D  V    E  ++L   +DQ  IP   R  
Sbjct: 1148 DDFLSVAVPVELDETVYFSTEKGRVLKLIVDQKRIPVAKRTA 1189


>gi|308450488|ref|XP_003088314.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
 gi|308248035|gb|EFO91987.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
          Length = 875

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 93/187 (49%), Positives = 128/187 (68%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG D  +  + + +  +  V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+I+ 
Sbjct: 362 MGEDVEARRSFIQQNAIDQVDLQLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYT 421

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     AF K  R++G+V+G+ HPHGD +VYDSLVRL QP+  RYPL  GQGNFG+
Sbjct: 422 MYDGGYRPDKAFSKCTRVIGDVMGQFHPHGDTAVYDSLVRLVQPWSLRYPLALGQGNFGS 481

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA+RYTE +M+ +A  +++ +DED VDF+D Y+    EP V  ++FPNLL NG+
Sbjct: 482 PGNDGAAAHRYTETKMSPLAMEMVRDIDEDTVDFQDNYDGRTQEPTVLTARFPNLLVNGS 541

Query: 181 SGIAVGM 187
            GIAVGM
Sbjct: 542 VGIAVGM 548



 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/476 (11%), Positives = 130/476 (27%), Gaps = 25/476 (5%)

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
             ++              + +++P+        + D  T   +   ++      +   + 
Sbjct: 315 SGVQRYKGLGEMNHEELWDTTMNPETRTLLQVTMEDAATADEIFATLMGEDVEARRSFIQ 374

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRV-----------EILKGLLIAY--LNIDEIIA 405
               + +  + E+      + M  I  R                   +       D+  +
Sbjct: 375 QNAIDQVDLQLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPDKAFS 434

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                             T      +  ++  SLR        +                
Sbjct: 435 KCTRVIGDVMGQFHPHGDTAVYDSLVRLVQPWSLRYPLALGQGNFGSPGNDGAAAHRYTE 494

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
                   ++  +I E    F  + D   +  T       +        I      +  +
Sbjct: 495 TKMSPLAMEMVRDIDEDTVDFQDNYDGRTQEPTVLTARFPNLLVNGSVGIAVG--MIKRT 552

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
                R+       +     +  D ++      T   +L  +  G+ Y      +  G  
Sbjct: 553 RIDNYRTQHRGGKGVKDAALRADDIVEHFFVTTTHHWLLFFTNTGRVYRAKTYEVPEGGR 612

Query: 586 HGEAIQ--LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             +      L+ L  ++ +        +++   L++ +  G       +E   N   G  
Sbjct: 613 DAKGQHLANLLALAPDESVTQILDLREFEADRFLVLATRDGLVKKTALTEYDTNRTGGII 672

Query: 641 FLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG 696
            +K+  E+++   +     D V ++ ++   + F+     +  M R   GVR  +++DG 
Sbjct: 673 AIKLRDEDELVSALIAESDDDVLLISKHGMSVRFTASDQALRPMGRSTSGVRGMNFRDGD 732

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +   +I EG          Y +        +  RGG G  V K     G  + 
Sbjct: 733 -QLLQASRITEGGYVFVVTEGGYAKRTAVDEYRVQNRGGFGIKVAKLDEARGDLVG 787


>gi|170676377|gb|ACB30376.1| DNA gyrase subunit A [Burkholderia pseudomallei]
 gi|170676383|gb|ACB30379.1| DNA gyrase subunit A [Burkholderia mallei]
          Length = 157

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 90/157 (57%), Positives = 122/157 (77%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+A
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDTAVYDTIVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D++ VDF   Y+  +
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|149346164|gb|ABR23653.1| gyrase A [Aeromonas hydrophila]
          Length = 152

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/152 (57%), Positives = 117/152 (76%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           D+   Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIA 152


>gi|237841329|ref|XP_002369962.1| DNA gyrase subunit A, putative [Toxoplasma gondii ME49]
 gi|211967626|gb|EEB02822.1| DNA gyrase subunit A, putative [Toxoplasma gondii ME49]
          Length = 1278

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 157/468 (33%), Positives = 241/468 (51%), Gaps = 36/468 (7%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ L    +F+K AR+VGEV+GK HPHGDQ+VYD+LVRLAQ FV R+PLI G GNFG+
Sbjct: 1   MQQLHLHPSGSFRKCARVVGEVLGKFHPHGDQAVYDALVRLAQTFVARHPLIEGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +DGD  AA RYTE R+T+  E  +L+ +D+  V FR  ++  + EPVVFP+  P +L  G
Sbjct: 61  VDGDPPAAMRYTECRLTRFCEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGM+T IP HN+ EI +A +ALI +PE+   +LL  + GPDFPTGG++V S E I
Sbjct: 121 SSGIAVGMSTQIPPHNLHEILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNS-EEI 179

Query: 240 VESYRLGRGGFRVRARWC------------------------------VEEVGRGSWCIV 269
             +Y+ GRG   +R R+                               +    +    +V
Sbjct: 180 PGAYKEGRGRVLLRGRFHLEGEDDDGDTVPGRDRNAEDEAERDEADRNIRNGRKNERRLV 239

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           +TE+PY V KS +++ IA++I  K +  +  +RDES      V+    R  D   ++  +
Sbjct: 240 ITELPYGVNKSTVMQVIAQMISVKFLEGVTSVRDESDWRGIRVVLVLRRDADAHTILTLL 299

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
              ++++   P+++  L  G  P    L  +L  W+A R   L R  +        R  +
Sbjct: 300 LKHTNLQVYIPMHLIALEKGTKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHL 359

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKLEEY 445
           L+GLL A   +D+++  +R                   +  Q  A+L L L  L +LE  
Sbjct: 360 LEGLLRAVSLMDDVVQTVRESLSADEAKQKLTEPPLGFSPAQAQALLRLTLSRLTRLERR 419

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           Q++ E         ++ SLL   ++ +  +  E++  K          
Sbjct: 420 QLEEEAKAQKNRLSELASLLAHDREIYELMVEELQAHKTRHKAPRKTK 467



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 28/118 (23%), Gaps = 32/118 (27%)

Query: 661  VAVVGENRKLLIFSIDQIPEMS--RGKGVRLQSYKDGGISDVICFKICE----------- 707
            + +V      L F    +      + +GVR    + G     +     E           
Sbjct: 1009 IVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPEVKEDKAKTESR 1068

Query: 708  -------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                                 + +      + +        + +R GVG  V +   R
Sbjct: 1069 KEGDSDETQSKNESSNEKAEPSLLIVTAAGFGKRIRVSALRMQRRRGVGVRVIRLVKR 1126


>gi|124365597|gb|ABN09827.1| gyrase subunit A [Clostridium difficile]
 gi|124365599|gb|ABN09828.1| gyrase subunit A [Clostridium difficile]
          Length = 154

 Score =  314 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 79/154 (51%), Positives = 118/154 (76%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HP
Sbjct: 1   SYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++
Sbjct: 61  HGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIE 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           ++ VDF+  ++E   EP V P+++PNLL NG++G
Sbjct: 121 KETVDFKPNFDESLKEPSVLPARYPNLLVNGSNG 154


>gi|227553418|ref|ZP_03983467.1| conserved hypothetical protein [Enterococcus faecalis HH22]
 gi|227177447|gb|EEI58419.1| conserved hypothetical protein [Enterococcus faecalis HH22]
          Length = 198

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 85/191 (44%), Positives = 134/191 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALA 205
           N+ EI +  + 
Sbjct: 188 NLAEIIDGTVY 198


>gi|170676385|gb|ACB30380.1| DNA gyrase subunit A [Burkholderia mallei]
 gi|170676387|gb|ACB30381.1| DNA gyrase subunit A [Burkholderia mallei]
          Length = 157

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 90/157 (57%), Positives = 122/157 (77%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+A
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDIAVYDTIVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D++ VDF   Y+  +
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|29602637|gb|AAO85705.1| GyrA [Campylobacter jejuni]
          Length = 170

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 95/170 (55%), Positives = 126/170 (74%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KS
Sbjct: 1   DIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+
Sbjct: 61  ARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAK 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAV
Sbjct: 121 MSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAV 170


>gi|190888734|gb|ACE95992.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 88/158 (55%), Positives = 119/158 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|77169256|gb|ABA63565.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 136/309 (44%), Positives = 206/309 (66%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT G I+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L     PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|77168996|gb|ABA63435.1| gyrase subunit A [Clostridium perfringens]
 gi|77168998|gb|ABA63436.1| gyrase subunit A [Clostridium perfringens]
 gi|77169002|gb|ABA63438.1| gyrase subunit A [Clostridium perfringens]
 gi|77169012|gb|ABA63443.1| gyrase subunit A [Clostridium perfringens]
 gi|77169014|gb|ABA63444.1| gyrase subunit A [Clostridium perfringens]
 gi|77169016|gb|ABA63445.1| gyrase subunit A [Clostridium perfringens]
 gi|77169018|gb|ABA63446.1| gyrase subunit A [Clostridium perfringens]
 gi|77169024|gb|ABA63449.1| gyrase subunit A [Clostridium perfringens]
 gi|77169030|gb|ABA63452.1| gyrase subunit A [Clostridium perfringens]
 gi|77169032|gb|ABA63453.1| gyrase subunit A [Clostridium perfringens]
 gi|77169034|gb|ABA63454.1| gyrase subunit A [Clostridium perfringens]
 gi|77169072|gb|ABA63473.1| gyrase subunit A [Clostridium perfringens]
 gi|77169102|gb|ABA63488.1| gyrase subunit A [Clostridium perfringens]
 gi|77169104|gb|ABA63489.1| gyrase subunit A [Clostridium perfringens]
 gi|77169194|gb|ABA63534.1| gyrase subunit A [Clostridium perfringens]
 gi|77169196|gb|ABA63535.1| gyrase subunit A [Clostridium perfringens]
 gi|77169206|gb|ABA63540.1| gyrase subunit A [Clostridium perfringens]
 gi|77169208|gb|ABA63541.1| gyrase subunit A [Clostridium perfringens]
 gi|77169240|gb|ABA63557.1| gyrase subunit A [Clostridium perfringens]
 gi|77169276|gb|ABA63575.1| gyrase subunit A [Clostridium perfringens]
 gi|77169332|gb|ABA63603.1| gyrase subunit A [Clostridium perfringens]
 gi|77169334|gb|ABA63604.1| gyrase subunit A [Clostridium perfringens]
 gi|77169374|gb|ABA63624.1| gyrase subunit A [Clostridium perfringens]
 gi|77169380|gb|ABA63627.1| gyrase subunit A [Clostridium perfringens]
 gi|77169396|gb|ABA63635.1| gyrase subunit A [Clostridium perfringens]
 gi|77169398|gb|ABA63636.1| gyrase subunit A [Clostridium perfringens]
 gi|77169444|gb|ABA63659.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 137/309 (44%), Positives = 206/309 (66%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT G I+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L     PQV+ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVD-NQPQVLNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|77169442|gb|ABA63658.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 136/309 (44%), Positives = 206/309 (66%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT G I+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L     PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVD-NQPQILNLKQVLVHYVNFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|329124301|gb|AEB72028.1| DNA gyrase subunit A [Aeromonas sp. A19(2011)]
          Length = 153

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 87/152 (57%), Positives = 116/152 (76%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VYD
Sbjct: 2   VIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYD 61

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD+  
Sbjct: 62  TIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVP 121

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            Y+  +  P V P+K PNLL NG+SGIAVG A
Sbjct: 122 NYDGTEMIPAVMPTKVPNLLVNGSSGIAVGWA 153


>gi|77169138|gb|ABA63506.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 137/309 (44%), Positives = 206/309 (66%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT G I+  +  I  +Y  GRG   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAG-IIMGKSGIRAAYETGRGRIVVRAKAEIEEEN-GRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L     PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|149346162|gb|ABR23652.1| gyrase A [Aeromonas veronii bv. sobria]
          Length = 151

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 86/151 (56%), Positives = 116/151 (76%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDVA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD
Sbjct: 61  VYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           +   Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 121 WVPNYDGTEMIPAVMPTKVPNLLVNGSSGIA 151


>gi|77168984|gb|ABA63429.1| gyrase subunit A [Clostridium perfringens]
 gi|77168986|gb|ABA63430.1| gyrase subunit A [Clostridium perfringens]
 gi|77168990|gb|ABA63432.1| gyrase subunit A [Clostridium perfringens]
 gi|77168994|gb|ABA63434.1| gyrase subunit A [Clostridium perfringens]
 gi|77169000|gb|ABA63437.1| gyrase subunit A [Clostridium perfringens]
 gi|77169004|gb|ABA63439.1| gyrase subunit A [Clostridium perfringens]
 gi|77169006|gb|ABA63440.1| gyrase subunit A [Clostridium perfringens]
 gi|77169008|gb|ABA63441.1| gyrase subunit A [Clostridium perfringens]
 gi|77169010|gb|ABA63442.1| gyrase subunit A [Clostridium perfringens]
 gi|77169020|gb|ABA63447.1| gyrase subunit A [Clostridium perfringens]
 gi|77169022|gb|ABA63448.1| gyrase subunit A [Clostridium perfringens]
 gi|77169026|gb|ABA63450.1| gyrase subunit A [Clostridium perfringens]
 gi|77169028|gb|ABA63451.1| gyrase subunit A [Clostridium perfringens]
 gi|77169036|gb|ABA63455.1| gyrase subunit A [Clostridium perfringens]
 gi|77169038|gb|ABA63456.1| gyrase subunit A [Clostridium perfringens]
 gi|77169040|gb|ABA63457.1| gyrase subunit A [Clostridium perfringens]
 gi|77169042|gb|ABA63458.1| gyrase subunit A [Clostridium perfringens]
 gi|77169044|gb|ABA63459.1| gyrase subunit A [Clostridium perfringens]
 gi|77169046|gb|ABA63460.1| gyrase subunit A [Clostridium perfringens]
 gi|77169048|gb|ABA63461.1| gyrase subunit A [Clostridium perfringens]
 gi|77169050|gb|ABA63462.1| gyrase subunit A [Clostridium perfringens]
 gi|77169052|gb|ABA63463.1| gyrase subunit A [Clostridium perfringens]
 gi|77169054|gb|ABA63464.1| gyrase subunit A [Clostridium perfringens]
 gi|77169056|gb|ABA63465.1| gyrase subunit A [Clostridium perfringens]
 gi|77169058|gb|ABA63466.1| gyrase subunit A [Clostridium perfringens]
 gi|77169060|gb|ABA63467.1| gyrase subunit A [Clostridium perfringens]
 gi|77169062|gb|ABA63468.1| gyrase subunit A [Clostridium perfringens]
 gi|77169064|gb|ABA63469.1| gyrase subunit A [Clostridium perfringens]
 gi|77169066|gb|ABA63470.1| gyrase subunit A [Clostridium perfringens]
 gi|77169068|gb|ABA63471.1| gyrase subunit A [Clostridium perfringens]
 gi|77169070|gb|ABA63472.1| gyrase subunit A [Clostridium perfringens]
 gi|77169074|gb|ABA63474.1| gyrase subunit A [Clostridium perfringens]
 gi|77169076|gb|ABA63475.1| gyrase subunit A [Clostridium perfringens]
 gi|77169078|gb|ABA63476.1| gyrase subunit A [Clostridium perfringens]
 gi|77169080|gb|ABA63477.1| gyrase subunit A [Clostridium perfringens]
 gi|77169084|gb|ABA63479.1| gyrase subunit A [Clostridium perfringens]
 gi|77169086|gb|ABA63480.1| gyrase subunit A [Clostridium perfringens]
 gi|77169088|gb|ABA63481.1| gyrase subunit A [Clostridium perfringens]
 gi|77169090|gb|ABA63482.1| gyrase subunit A [Clostridium perfringens]
 gi|77169092|gb|ABA63483.1| gyrase subunit A [Clostridium perfringens]
 gi|77169094|gb|ABA63484.1| gyrase subunit A [Clostridium perfringens]
 gi|77169096|gb|ABA63485.1| gyrase subunit A [Clostridium perfringens]
 gi|77169098|gb|ABA63486.1| gyrase subunit A [Clostridium perfringens]
 gi|77169118|gb|ABA63496.1| gyrase subunit A [Clostridium perfringens]
 gi|77169120|gb|ABA63497.1| gyrase subunit A [Clostridium perfringens]
 gi|77169122|gb|ABA63498.1| gyrase subunit A [Clostridium perfringens]
 gi|77169124|gb|ABA63499.1| gyrase subunit A [Clostridium perfringens]
 gi|77169126|gb|ABA63500.1| gyrase subunit A [Clostridium perfringens]
 gi|77169128|gb|ABA63501.1| gyrase subunit A [Clostridium perfringens]
 gi|77169134|gb|ABA63504.1| gyrase subunit A [Clostridium perfringens]
 gi|77169136|gb|ABA63505.1| gyrase subunit A [Clostridium perfringens]
 gi|77169140|gb|ABA63507.1| gyrase subunit A [Clostridium perfringens]
 gi|77169142|gb|ABA63508.1| gyrase subunit A [Clostridium perfringens]
 gi|77169144|gb|ABA63509.1| gyrase subunit A [Clostridium perfringens]
 gi|77169156|gb|ABA63515.1| gyrase subunit A [Clostridium perfringens]
 gi|77169160|gb|ABA63517.1| gyrase subunit A [Clostridium perfringens]
 gi|77169162|gb|ABA63518.1| gyrase subunit A [Clostridium perfringens]
 gi|77169164|gb|ABA63519.1| gyrase subunit A [Clostridium perfringens]
 gi|77169166|gb|ABA63520.1| gyrase subunit A [Clostridium perfringens]
 gi|77169168|gb|ABA63521.1| gyrase subunit A [Clostridium perfringens]
 gi|77169170|gb|ABA63522.1| gyrase subunit A [Clostridium perfringens]
 gi|77169172|gb|ABA63523.1| gyrase subunit A [Clostridium perfringens]
 gi|77169174|gb|ABA63524.1| gyrase subunit A [Clostridium perfringens]
 gi|77169176|gb|ABA63525.1| gyrase subunit A [Clostridium perfringens]
 gi|77169178|gb|ABA63526.1| gyrase subunit A [Clostridium perfringens]
 gi|77169182|gb|ABA63528.1| gyrase subunit A [Clostridium perfringens]
 gi|77169188|gb|ABA63531.1| gyrase subunit A [Clostridium perfringens]
 gi|77169192|gb|ABA63533.1| gyrase subunit A [Clostridium perfringens]
 gi|77169198|gb|ABA63536.1| gyrase subunit A [Clostridium perfringens]
 gi|77169200|gb|ABA63537.1| gyrase subunit A [Clostridium perfringens]
 gi|77169202|gb|ABA63538.1| gyrase subunit A [Clostridium perfringens]
 gi|77169204|gb|ABA63539.1| gyrase subunit A [Clostridium perfringens]
 gi|77169210|gb|ABA63542.1| gyrase subunit A [Clostridium perfringens]
 gi|77169214|gb|ABA63544.1| gyrase subunit A [Clostridium perfringens]
 gi|77169216|gb|ABA63545.1| gyrase subunit A [Clostridium perfringens]
 gi|77169218|gb|ABA63546.1| gyrase subunit A [Clostridium perfringens]
 gi|77169220|gb|ABA63547.1| gyrase subunit A [Clostridium perfringens]
 gi|77169222|gb|ABA63548.1| gyrase subunit A [Clostridium perfringens]
 gi|77169224|gb|ABA63549.1| gyrase subunit A [Clostridium perfringens]
 gi|77169226|gb|ABA63550.1| gyrase subunit A [Clostridium perfringens]
 gi|77169228|gb|ABA63551.1| gyrase subunit A [Clostridium perfringens]
 gi|77169230|gb|ABA63552.1| gyrase subunit A [Clostridium perfringens]
 gi|77169232|gb|ABA63553.1| gyrase subunit A [Clostridium perfringens]
 gi|77169234|gb|ABA63554.1| gyrase subunit A [Clostridium perfringens]
 gi|77169236|gb|ABA63555.1| gyrase subunit A [Clostridium perfringens]
 gi|77169238|gb|ABA63556.1| gyrase subunit A [Clostridium perfringens]
 gi|77169242|gb|ABA63558.1| gyrase subunit A [Clostridium perfringens]
 gi|77169244|gb|ABA63559.1| gyrase subunit A [Clostridium perfringens]
 gi|77169246|gb|ABA63560.1| gyrase subunit A [Clostridium perfringens]
 gi|77169248|gb|ABA63561.1| gyrase subunit A [Clostridium perfringens]
 gi|77169250|gb|ABA63562.1| gyrase subunit A [Clostridium perfringens]
 gi|77169252|gb|ABA63563.1| gyrase subunit A [Clostridium perfringens]
 gi|77169254|gb|ABA63564.1| gyrase subunit A [Clostridium perfringens]
 gi|77169258|gb|ABA63566.1| gyrase subunit A [Clostridium perfringens]
 gi|77169260|gb|ABA63567.1| gyrase subunit A [Clostridium perfringens]
 gi|77169262|gb|ABA63568.1| gyrase subunit A [Clostridium perfringens]
 gi|77169264|gb|ABA63569.1| gyrase subunit A [Clostridium perfringens]
 gi|77169266|gb|ABA63570.1| gyrase subunit A [Clostridium perfringens]
 gi|77169268|gb|ABA63571.1| gyrase subunit A [Clostridium perfringens]
 gi|77169270|gb|ABA63572.1| gyrase subunit A [Clostridium perfringens]
 gi|77169272|gb|ABA63573.1| gyrase subunit A [Clostridium perfringens]
 gi|77169274|gb|ABA63574.1| gyrase subunit A [Clostridium perfringens]
 gi|77169278|gb|ABA63576.1| gyrase subunit A [Clostridium perfringens]
 gi|77169280|gb|ABA63577.1| gyrase subunit A [Clostridium perfringens]
 gi|77169282|gb|ABA63578.1| gyrase subunit A [Clostridium perfringens]
 gi|77169284|gb|ABA63579.1| gyrase subunit A [Clostridium perfringens]
 gi|77169286|gb|ABA63580.1| gyrase subunit A [Clostridium perfringens]
 gi|77169288|gb|ABA63581.1| gyrase subunit A [Clostridium perfringens]
 gi|77169290|gb|ABA63582.1| gyrase subunit A [Clostridium perfringens]
 gi|77169292|gb|ABA63583.1| gyrase subunit A [Clostridium perfringens]
 gi|77169296|gb|ABA63585.1| gyrase subunit A [Clostridium perfringens]
 gi|77169298|gb|ABA63586.1| gyrase subunit A [Clostridium perfringens]
 gi|77169300|gb|ABA63587.1| gyrase subunit A [Clostridium perfringens]
 gi|77169302|gb|ABA63588.1| gyrase subunit A [Clostridium perfringens]
 gi|77169304|gb|ABA63589.1| gyrase subunit A [Clostridium perfringens]
 gi|77169306|gb|ABA63590.1| gyrase subunit A [Clostridium perfringens]
 gi|77169308|gb|ABA63591.1| gyrase subunit A [Clostridium perfringens]
 gi|77169310|gb|ABA63592.1| gyrase subunit A [Clostridium perfringens]
 gi|77169312|gb|ABA63593.1| gyrase subunit A [Clostridium perfringens]
 gi|77169314|gb|ABA63594.1| gyrase subunit A [Clostridium perfringens]
 gi|77169316|gb|ABA63595.1| gyrase subunit A [Clostridium perfringens]
 gi|77169318|gb|ABA63596.1| gyrase subunit A [Clostridium perfringens]
 gi|77169320|gb|ABA63597.1| gyrase subunit A [Clostridium perfringens]
 gi|77169322|gb|ABA63598.1| gyrase subunit A [Clostridium perfringens]
 gi|77169324|gb|ABA63599.1| gyrase subunit A [Clostridium perfringens]
 gi|77169326|gb|ABA63600.1| gyrase subunit A [Clostridium perfringens]
 gi|77169330|gb|ABA63602.1| gyrase subunit A [Clostridium perfringens]
 gi|77169336|gb|ABA63605.1| gyrase subunit A [Clostridium perfringens]
 gi|77169338|gb|ABA63606.1| gyrase subunit A [Clostridium perfringens]
 gi|77169340|gb|ABA63607.1| gyrase subunit A [Clostridium perfringens]
 gi|77169342|gb|ABA63608.1| gyrase subunit A [Clostridium perfringens]
 gi|77169344|gb|ABA63609.1| gyrase subunit A [Clostridium perfringens]
 gi|77169346|gb|ABA63610.1| gyrase subunit A [Clostridium perfringens]
 gi|77169348|gb|ABA63611.1| gyrase subunit A [Clostridium perfringens]
 gi|77169354|gb|ABA63614.1| gyrase subunit A [Clostridium perfringens]
 gi|77169356|gb|ABA63615.1| gyrase subunit A [Clostridium perfringens]
 gi|77169358|gb|ABA63616.1| gyrase subunit A [Clostridium perfringens]
 gi|77169360|gb|ABA63617.1| gyrase subunit A [Clostridium perfringens]
 gi|77169362|gb|ABA63618.1| gyrase subunit A [Clostridium perfringens]
 gi|77169364|gb|ABA63619.1| gyrase subunit A [Clostridium perfringens]
 gi|77169366|gb|ABA63620.1| gyrase subunit A [Clostridium perfringens]
 gi|77169368|gb|ABA63621.1| gyrase subunit A [Clostridium perfringens]
 gi|77169370|gb|ABA63622.1| gyrase subunit A [Clostridium perfringens]
 gi|77169376|gb|ABA63625.1| gyrase subunit A [Clostridium perfringens]
 gi|77169378|gb|ABA63626.1| gyrase subunit A [Clostridium perfringens]
 gi|77169382|gb|ABA63628.1| gyrase subunit A [Clostridium perfringens]
 gi|77169384|gb|ABA63629.1| gyrase subunit A [Clostridium perfringens]
 gi|77169386|gb|ABA63630.1| gyrase subunit A [Clostridium perfringens]
 gi|77169388|gb|ABA63631.1| gyrase subunit A [Clostridium perfringens]
 gi|77169390|gb|ABA63632.1| gyrase subunit A [Clostridium perfringens]
 gi|77169392|gb|ABA63633.1| gyrase subunit A [Clostridium perfringens]
 gi|77169394|gb|ABA63634.1| gyrase subunit A [Clostridium perfringens]
 gi|77169400|gb|ABA63637.1| gyrase subunit A [Clostridium perfringens]
 gi|77169402|gb|ABA63638.1| gyrase subunit A [Clostridium perfringens]
 gi|77169408|gb|ABA63641.1| gyrase subunit A [Clostridium perfringens]
 gi|77169410|gb|ABA63642.1| gyrase subunit A [Clostridium perfringens]
 gi|77169412|gb|ABA63643.1| gyrase subunit A [Clostridium perfringens]
 gi|77169414|gb|ABA63644.1| gyrase subunit A [Clostridium perfringens]
 gi|77169416|gb|ABA63645.1| gyrase subunit A [Clostridium perfringens]
 gi|77169418|gb|ABA63646.1| gyrase subunit A [Clostridium perfringens]
 gi|77169420|gb|ABA63647.1| gyrase subunit A [Clostridium perfringens]
 gi|77169422|gb|ABA63648.1| gyrase subunit A [Clostridium perfringens]
 gi|77169424|gb|ABA63649.1| gyrase subunit A [Clostridium perfringens]
 gi|77169426|gb|ABA63650.1| gyrase subunit A [Clostridium perfringens]
 gi|77169428|gb|ABA63651.1| gyrase subunit A [Clostridium perfringens]
 gi|77169430|gb|ABA63652.1| gyrase subunit A [Clostridium perfringens]
 gi|77169432|gb|ABA63653.1| gyrase subunit A [Clostridium perfringens]
 gi|77169434|gb|ABA63654.1| gyrase subunit A [Clostridium perfringens]
 gi|77169436|gb|ABA63655.1| gyrase subunit A [Clostridium perfringens]
 gi|77169438|gb|ABA63656.1| gyrase subunit A [Clostridium perfringens]
 gi|77169440|gb|ABA63657.1| gyrase subunit A [Clostridium perfringens]
 gi|77169446|gb|ABA63660.1| gyrase subunit A [Clostridium perfringens]
 gi|77169448|gb|ABA63661.1| gyrase subunit A [Clostridium perfringens]
 gi|77169450|gb|ABA63662.1| gyrase subunit A [Clostridium perfringens]
 gi|77169452|gb|ABA63663.1| gyrase subunit A [Clostridium perfringens]
 gi|77169454|gb|ABA63664.1| gyrase subunit A [Clostridium perfringens]
 gi|77169456|gb|ABA63665.1| gyrase subunit A [Clostridium perfringens]
 gi|77169458|gb|ABA63666.1| gyrase subunit A [Clostridium perfringens]
 gi|77169460|gb|ABA63667.1| gyrase subunit A [Clostridium perfringens]
 gi|77169462|gb|ABA63668.1| gyrase subunit A [Clostridium perfringens]
 gi|77169464|gb|ABA63669.1| gyrase subunit A [Clostridium perfringens]
 gi|77169466|gb|ABA63670.1| gyrase subunit A [Clostridium perfringens]
 gi|77169468|gb|ABA63671.1| gyrase subunit A [Clostridium perfringens]
 gi|77169470|gb|ABA63672.1| gyrase subunit A [Clostridium perfringens]
 gi|77169472|gb|ABA63673.1| gyrase subunit A [Clostridium perfringens]
 gi|77169474|gb|ABA63674.1| gyrase subunit A [Clostridium perfringens]
 gi|77169476|gb|ABA63675.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 136/309 (44%), Positives = 206/309 (66%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT G I+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L     PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|73916130|gb|AAZ92933.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 632

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 148/570 (25%), Positives = 260/570 (45%), Gaps = 29/570 (5%)

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A   ++DNPE++ + L+E + GPDFPTG  +V  +  I ++Y  G+G   +R+R  +E  
Sbjct: 1   AVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIVLRSRTEIETT 59

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +    +    R   
Sbjct: 60  KTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVKRDAS 119

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            ++++ ++F ++ M+T F     +     +P+++ L  IL  ++ H++EV+ RR+ F  +
Sbjct: 120 ANVILNNLFKMTQMQTNFGF-NMLAIQNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKE 178

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRS 438
             + R  IL+GLLIA  +IDE+I IIR  +         +S+F L+E Q  AIL++RLR 
Sbjct: 179 KAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQAILDMRLRR 238

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS      +RRT 
Sbjct: 239 LTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD-----KRRTE 293

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDS 550
              +     +   + +IE+  + + +SNRG+I+          K     +     K+ D 
Sbjct: 294 L--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDF 351

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY 608
           ++  +   T D +L  +  G+ Y L    +       +   +  L+ L+ ++ I T    
Sbjct: 352 VRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV 411

Query: 609 D----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAV 663
           +        L   +  G        E     + G   L +  E+++  V+   GD  + +
Sbjct: 412 ESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIII 471

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
             +    + F+   +  MSR   GV+  + ++G         I +    +    + Y + 
Sbjct: 472 GTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASL-ITDQDEVLIITEKGYGKR 530

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                     RGG G    K   ++G    
Sbjct: 531 TVATEYPTKGRGGKGMQTAKITEKNGLLAG 560


>gi|77168988|gb|ABA63431.1| gyrase subunit A [Clostridium perfringens]
 gi|77169130|gb|ABA63502.1| gyrase subunit A [Clostridium perfringens]
 gi|77169146|gb|ABA63510.1| gyrase subunit A [Clostridium perfringens]
 gi|77169150|gb|ABA63512.1| gyrase subunit A [Clostridium perfringens]
 gi|77169158|gb|ABA63516.1| gyrase subunit A [Clostridium perfringens]
 gi|77169294|gb|ABA63584.1| gyrase subunit A [Clostridium perfringens]
 gi|77169350|gb|ABA63612.1| gyrase subunit A [Clostridium perfringens]
 gi|77169352|gb|ABA63613.1| gyrase subunit A [Clostridium perfringens]
 gi|77169404|gb|ABA63639.1| gyrase subunit A [Clostridium perfringens]
 gi|77169406|gb|ABA63640.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 136/309 (44%), Positives = 206/309 (66%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT G I+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L     PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|77169328|gb|ABA63601.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 136/309 (44%), Positives = 206/309 (66%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT G I+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMAYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L     PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|226452045|gb|ACO59202.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452047|gb|ACO59203.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452049|gb|ACO59204.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452051|gb|ACO59205.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452053|gb|ACO59206.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452055|gb|ACO59207.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452061|gb|ACO59210.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452063|gb|ACO59211.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452075|gb|ACO59217.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452077|gb|ACO59218.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452079|gb|ACO59219.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452085|gb|ACO59222.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452087|gb|ACO59223.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452089|gb|ACO59224.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 87/175 (49%), Positives = 125/175 (71%), Gaps = 1/175 (0%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KKSAR VG+V
Sbjct: 1   RKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAE 141
           +GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTEA++++ A+
Sbjct: 61  LGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAD 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGMAT IP HNV
Sbjct: 121 VLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNV 175


>gi|77169132|gb|ABA63503.1| gyrase subunit A [Clostridium perfringens]
 gi|77169148|gb|ABA63511.1| gyrase subunit A [Clostridium perfringens]
 gi|77169152|gb|ABA63513.1| gyrase subunit A [Clostridium perfringens]
 gi|77169154|gb|ABA63514.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 136/309 (44%), Positives = 206/309 (66%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT G I+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L     PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|77169106|gb|ABA63490.1| gyrase subunit A [Clostridium perfringens]
 gi|77169108|gb|ABA63491.1| gyrase subunit A [Clostridium perfringens]
 gi|77169110|gb|ABA63492.1| gyrase subunit A [Clostridium perfringens]
 gi|77169112|gb|ABA63493.1| gyrase subunit A [Clostridium perfringens]
 gi|77169114|gb|ABA63494.1| gyrase subunit A [Clostridium perfringens]
 gi|77169116|gb|ABA63495.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 137/309 (44%), Positives = 206/309 (66%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT G I+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L     PQV+ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVD-NQPQVLNLKQVLVHYINFQKDVITRRTRFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|14289141|gb|AAK57747.1| topoisomerase IV subunit C [Klebsiella pneumoniae]
          Length = 165

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 87/165 (52%), Positives = 120/165 (72%), Gaps = 1/165 (0%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPH
Sbjct: 1   YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVD 148
           GD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ AEL+L  + 
Sbjct: 61  GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELG 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP 
Sbjct: 121 QGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 165


>gi|190888754|gb|ACE96002.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 159

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 89/159 (55%), Positives = 119/159 (74%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y ++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SGI
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGI 159


>gi|170676379|gb|ACB30377.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 157

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 89/157 (56%), Positives = 121/157 (77%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK HPHGD +VY ++VR+A
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDIAVYGTIVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D++ VDF   Y+  +
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|77169372|gb|ABA63623.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 135/309 (43%), Positives = 206/309 (66%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT G I+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+++  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADIVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L     PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|77168992|gb|ABA63433.1| gyrase subunit A [Clostridium perfringens]
 gi|77169082|gb|ABA63478.1| gyrase subunit A [Clostridium perfringens]
 gi|77169100|gb|ABA63487.1| gyrase subunit A [Clostridium perfringens]
 gi|77169180|gb|ABA63527.1| gyrase subunit A [Clostridium perfringens]
 gi|77169184|gb|ABA63529.1| gyrase subunit A [Clostridium perfringens]
 gi|77169186|gb|ABA63530.1| gyrase subunit A [Clostridium perfringens]
 gi|77169190|gb|ABA63532.1| gyrase subunit A [Clostridium perfringens]
 gi|77169212|gb|ABA63543.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 135/309 (43%), Positives = 206/309 (66%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT G I+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L     PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NID++I
Sbjct: 298 ALDNIDDVI 306


>gi|226452065|gb|ACO59212.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452067|gb|ACO59213.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452069|gb|ACO59214.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452071|gb|ACO59215.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452073|gb|ACO59216.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452081|gb|ACO59220.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452083|gb|ACO59221.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 87/175 (49%), Positives = 125/175 (71%), Gaps = 1/175 (0%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KKSAR VG+V
Sbjct: 1   RKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAE 141
           +GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTEA++++ A+
Sbjct: 61  LGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGVPDDPKSFAAMRYTEAKLSKFAD 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGMAT IP HNV
Sbjct: 121 VLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNV 175


>gi|3046558|gb|AAC13492.1| DNA gyrase subunit A [Cronobacter sakazakii]
          Length = 150

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 85/150 (56%), Positives = 116/150 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++++ VDF D Y+  +  P V P+K PNL
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNL 150


>gi|190888752|gb|ACE96001.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 88/158 (55%), Positives = 119/158 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDIAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|190888748|gb|ACE95999.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 88/158 (55%), Positives = 118/158 (74%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y ++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|226452057|gb|ACO59208.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452059|gb|ACO59209.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 87/175 (49%), Positives = 125/175 (71%), Gaps = 1/175 (0%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KKSAR VG+V
Sbjct: 1   RKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAE 141
           +GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTEA++++ A+
Sbjct: 61  LGKYHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAD 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGMAT IP HNV
Sbjct: 121 VLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNV 175


>gi|312600999|gb|ADQ90254.1| Topoisomerase IV subunit A [Mycoplasma hyopneumoniae 168]
          Length = 749

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 153/653 (23%), Positives = 293/653 (44%), Gaps = 27/653 (4%)

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
              PL+   GN G+ID D  AA RYTE R+ +++E +L+ + ++ V F   +++ + EP 
Sbjct: 1   MNSPLVEMHGNKGSIDDDPPAAMRYTEVRLAEISEHLLELISKNVVSFYPNFDDSEKEPT 60

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           + P+ FPNLL NG  GIA G AT IP HN+ E+ +A + +I NP I+IE++   I+GPDF
Sbjct: 61  ILPAIFPNLLINGAIGIASGFATEIPPHNLGEVIDATILMIKNPGITIEEISTIILGPDF 120

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PTGG IV  +  I ++++ G+G  ++ + + + E   G   I +T IP+ + KS LIE+I
Sbjct: 121 PTGG-IVYGKSGIFDAFKTGKGKIKISSDYKIFE-KNGQNVIEITSIPFGISKSSLIEEI 178

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
            ++    +I  ++++ D+S ++   +L    +  +PDL++  +   + ++  +  N   +
Sbjct: 179 DDIRFDAKIYGIKNVIDQSDQNGVSILIELEQDGNPDLIINYLLQKTHLQIHYSYNSVAI 238

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
                P+++ +  ++  +L H R++     +F +    +R+EI+ G L      DE+I +
Sbjct: 239 CD-NSPKLLSIKEMIFYYLEHLRKIKLAEFNFELYKNKKRLEIITGFLKVADITDEVIKV 297

Query: 407 IRNEDKPK----PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           IR  D  K      ++  F+ ++ Q +AI ++RL  L K+E+     E  NL     +  
Sbjct: 298 IRASDNSKVGVVSDLIKFFNFSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEKNIARFK 357

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            L+ +  +    +   + + K+   K        +        D+    +         +
Sbjct: 358 KLIENKDEFDKNLINMLTDFKKHHGKPRKTKIIDSDIKIKINKDELVKDEFFY----FWI 413

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLK-IALHAHTTDRILLLSTDGKAYTLPAGNLL 581
             S       +K+   D                   +   + + L+  G+   L    + 
Sbjct: 414 TKSGLYKKLDIKNSLPDEIEKTQLPNGDFFIFQGIINQKQKAVFLTNKGEIAILAVHQIP 473

Query: 582 SGRGHGEAIQLLIDL--NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                     L I L   +NQ I++ F    ++S+  L+ +S    A  +   +++   +
Sbjct: 474 ELNLKNSPNNLKITLGIPNNQQILSVFFADSFESSQFLIFISKFSFAKRMNLDQLMKIKQ 533

Query: 637 KGKT-FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-Y 692
           K      +    +++  V       ++ ++    + L  SI +IP  +R   G+++    
Sbjct: 534 KKLQNIFRFKEGDELISVFLEEKLKNIVLITTQNRALKMSISEIPIYTRNSTGIKIFRHR 593

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           K+  IS     +  E L  ID   +    +  +L       G    L PK F 
Sbjct: 594 KNEFISASQTIESSESLAVIDFNSQFEKINTENLFF-----GNK-ILTPKNFK 640


>gi|29602633|gb|AAO85703.1| GyrA [Campylobacter jejuni]
          Length = 162

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 95/161 (59%), Positives = 121/161 (75%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+
Sbjct: 2   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+
Sbjct: 62  YHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVG
Sbjct: 122 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 162


>gi|170676381|gb|ACB30378.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 157

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 89/157 (56%), Positives = 121/157 (77%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK HPH D +VYD++VR+A
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHCDIAVYDTIVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D++ VDF   Y+  +
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|110626537|gb|ABG79009.1| DNA gyrase subunit A [Chromobacterium haemolyticum]
          Length = 163

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 87/154 (56%), Positives = 117/154 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y +  I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK HPHGD 
Sbjct: 1   YVMGVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRAYKKSARIVGDVIGKYHPHGDT 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RYPL+ GQGNFG++DGD+AAA RYTE RM ++A  +L  ++++ V
Sbjct: 61  AVYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDNAAAMRYTEIRMARIAHELLADIEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           DF   Y+  + EP++ P+K PNLL NG   IAVG
Sbjct: 121 DFGPNYDGSEHEPLILPAKIPNLLINGAPRIAVG 154


>gi|37999000|dbj|BAD00070.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999008|dbj|BAD00074.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999010|dbj|BAD00075.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999012|dbj|BAD00076.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999030|dbj|BAD00085.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|62084060|dbj|BAD91437.1| DNA topoisomerase subunit C [Streptococcus agalactiae]
          Length = 176

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 123/175 (70%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR++++A 
Sbjct: 61  VMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 121 YLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|3046556|gb|AAC13491.1| DNA gyrase subunit A [Citrobacter freundii]
          Length = 150

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/150 (56%), Positives = 118/150 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  ++ 
Sbjct: 61  YHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++++ VDF D Y+  + +P V P+K PNL
Sbjct: 121 DLEKETVDFVDNYDGTEKKPDVMPTKIPNL 150


>gi|13272211|gb|AAK15779.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 147

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 83/147 (56%), Positives = 113/147 (76%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             Y+  +  P V P+K PNLL NG+SG
Sbjct: 121 PNYDGTEMIPAVMPTKVPNLLVNGSSG 147


>gi|13272209|gb|AAK15778.1| DNA gyrase subunit A [Aeromonas sobria]
          Length = 147

 Score =  307 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 83/147 (56%), Positives = 112/147 (76%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             Y+  +  P V P+K PNLL NG+SG
Sbjct: 121 PNYDGTEMIPAVMPTKVPNLLVNGSSG 147


>gi|295394176|gb|ADG03699.1| DNA gyrase subunit A [Streptococcus salivarius]
          Length = 175

 Score =  307 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 133/174 (76%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPV RRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVQRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF+D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDLNKNTVDFQDNYDGSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V PS+ PNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++  +L+E
Sbjct: 121 IVLPSRIPNLLVNGATGIAVGMATNIPPHNLAETIDAVKLMMDNPEVTTRELME 174


>gi|238810482|dbj|BAH70215.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810484|dbj|BAH70216.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810486|dbj|BAH70217.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810488|dbj|BAH70218.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810490|dbj|BAH70219.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810492|dbj|BAH70220.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810494|dbj|BAH70221.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810496|dbj|BAH70222.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810498|dbj|BAH70223.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810500|dbj|BAH70224.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810502|dbj|BAH70225.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810504|dbj|BAH70226.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810506|dbj|BAH70227.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810508|dbj|BAH70228.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  307 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 75/155 (48%), Positives = 109/155 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +  
Sbjct: 2   SELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|295394180|gb|ADG03701.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 175

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 135/174 (77%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF+D Y+  + EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++  +L+E
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTRELME 174


>gi|213161597|ref|ZP_03347307.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 152

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 79/146 (54%), Positives = 111/146 (76%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKS
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEE 161
           + ++A  ++  ++++ VDF D Y+  
Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGT 152


>gi|13272207|gb|AAK15777.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 147

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 81/147 (55%), Positives = 112/147 (76%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             Y+  +  P V P+K P LL NG+SG
Sbjct: 121 PNYDGTEMIPAVMPTKVPTLLVNGSSG 147


>gi|238810516|dbj|BAH70232.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810518|dbj|BAH70233.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810520|dbj|BAH70234.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 74/155 (47%), Positives = 108/155 (69%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +  
Sbjct: 2   SELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|68067066|ref|XP_675504.1| DNA GyrAse a-subunit [Plasmodium berghei strain ANKA]
 gi|56494726|emb|CAH98020.1| DNA GyrAse a-subunit, putative [Plasmodium berghei]
          Length = 653

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 140/494 (28%), Positives = 251/494 (50%), Gaps = 34/494 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           + +  L++     V +   L + +L+YA   I  R + D RDG K V RRII +M E+  
Sbjct: 149 NQNKKLIKGEYYDVEICELLSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINK 208

Query: 67  DFGAA-FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            +    +KK ARIVGEVIGK HPHGD+SVYD+L+RLAQ       LI+G GNFG+++  +
Sbjct: 209 GYDKKSYKKCARIVGEVIGKYHPHGDKSVYDALIRLAQKHHNNNLLINGYGNFGSVEY-N 267

Query: 126 AAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           AAA RYTEAR++    +++L  ++++ +D+   ++  + EP V  SK P LL NG SGIA
Sbjct: 268 AAAMRYTEARISDFCYDVLLDEINDENIDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIA 327

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           V + T+IPSHN+ ++  A++  + N +I+ ++L   I GPDF TGGII+  ++++ + Y 
Sbjct: 328 VSILTNIPSHNIVDVINASINFLINEKITNDELFNIIKGPDFSTGGIIITKKDTLRDIYN 387

Query: 245 LGRGGFRVRAR-------------WCVEE---------VGRGSWCIVVTEIPYQVQKSRL 282
            G+G   +R+                + E           + S  +++  +P  V+ ++L
Sbjct: 388 TGKGNIVIRSNIFYEYAHNNKTYIHHINELGNLENLECDNKSSKKLIIKNLPPNVKPNKL 447

Query: 283 IEKIAELIIAKRIPL---LEDIRDESAEDVRIVLFPKNRSLDPDL---LMESIFMLSDME 336
           IE I  ++  ++      L  IRDES ++   ++    +    +     +  +   + ME
Sbjct: 448 IENIITVLNERKNEHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLLKYTSME 507

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
             +  N   +          L   L+ W  +R + + +    +   + + + I+   L  
Sbjct: 508 IDYHCNFVCIGYENSYTQFSLKSFLQLWCENRIKFIKKNYQIKNNNLQKELNIIDLYLTI 567

Query: 397 YLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
              I +II+ +         +  + S F L E+Q+  IL+++++ L  ++         N
Sbjct: 568 QKKILDIISFLHKNQNIEQIQNYLKSNFKLNEDQIKYILSMKIQKLINIKNINFDIRKYN 627

Query: 454 LLAEKEKIDSLLNS 467
           LL +++    ++++
Sbjct: 628 LLNKRQSNQYIIDN 641


>gi|295394172|gb|ADG03697.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|295394174|gb|ADG03698.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 175

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/174 (54%), Positives = 135/174 (77%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGDSAAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLME 174


>gi|295394170|gb|ADG03696.1| DNA gyrase subunit A [Streptococcus parasanguinis]
          Length = 175

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 93/174 (53%), Positives = 134/174 (77%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFADNYDASEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++  +L+E
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLMMDNPEVTTRELME 174


>gi|37999002|dbj|BAD00071.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999004|dbj|BAD00072.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999006|dbj|BAD00073.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
          Length = 176

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 123/175 (70%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR++++A 
Sbjct: 61  VMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 121 YLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|295394164|gb|ADG03693.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|295394168|gb|ADG03695.1| DNA gyrase subunit A [Streptococcus oralis ATCC 35037]
          Length = 175

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 93/174 (53%), Positives = 134/174 (77%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLME 174


>gi|37999020|dbj|BAD00080.1| DNA topoisomerase IV subunit C [Streptococcus canis]
          Length = 176

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 123/175 (70%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 YLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|37999026|dbj|BAD00083.1| DNA topoisomerase IV subunit C [Streptococcus equi subsp. equi]
 gi|197941219|gb|ACH78329.1| DNA topoisomerase [Streptococcus equi subsp. zooepidemicus]
          Length = 176

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 82/175 (46%), Positives = 122/175 (69%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ +D+  V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 YLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|238810544|dbj|BAH70246.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810546|dbj|BAH70247.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810548|dbj|BAH70248.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810550|dbj|BAH70249.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 74/155 (47%), Positives = 109/155 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +  
Sbjct: 2   SELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|238810552|dbj|BAH70250.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810554|dbj|BAH70251.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810556|dbj|BAH70252.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810558|dbj|BAH70253.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810560|dbj|BAH70254.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810562|dbj|BAH70255.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 75/155 (48%), Positives = 109/155 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +  
Sbjct: 2   SELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|37999016|dbj|BAD00078.1| DNA topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           dysgalactiae]
          Length = 176

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 123/175 (70%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 YLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|295394166|gb|ADG03694.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 175

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 133/174 (76%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIAMEMLRDINKNTVDFADNYDGSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V PS+FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++   L+E
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPDVTTRDLME 174


>gi|36988482|gb|AAQ87915.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 146

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 80/146 (54%), Positives = 111/146 (76%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VYD
Sbjct: 1   VIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYD 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+  
Sbjct: 61  TIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSG 182
            Y+  +  P V P+K P LL NG+SG
Sbjct: 121 NYDGTEMIPAVMPTKVPTLLVNGSSG 146


>gi|295394154|gb|ADG03688.1| DNA gyrase subunit A [Streptococcus australis]
          Length = 175

 Score =  304 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 133/174 (76%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFTDNYDASEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
            V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++  +L+E
Sbjct: 121 NVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLMMDNPDVTTRELME 174


>gi|37999018|dbj|BAD00079.1| DNA topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 176

 Score =  304 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 123/175 (70%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 YLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|832831|gb|AAA87239.1| DNA gyrase [Aeromonas salmonicida]
          Length = 147

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 87/147 (59%), Positives = 115/147 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VYD++VRL
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRL 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD+   Y+  
Sbjct: 61  AQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGT 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 EMIPAVMPTKVPNLLVNGSSGIAVGMA 147


>gi|37999028|dbj|BAD00084.1| DNA topoisomerase IV subunit C [Streptococcus equi subsp.
           zooepidemicus]
          Length = 176

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 82/174 (47%), Positives = 121/174 (69%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
            +LQ +D+  V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 121 YLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 174


>gi|238810522|dbj|BAH70235.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810524|dbj|BAH70236.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810526|dbj|BAH70237.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810528|dbj|BAH70238.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810530|dbj|BAH70239.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810532|dbj|BAH70240.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810534|dbj|BAH70241.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810536|dbj|BAH70242.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810538|dbj|BAH70243.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810540|dbj|BAH70244.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810542|dbj|BAH70245.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 75/155 (48%), Positives = 109/155 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +  
Sbjct: 2   SELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|36988477|gb|AAQ87914.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 147

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 81/147 (55%), Positives = 112/147 (76%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             Y+  +  P V P+K P LL NG+SG
Sbjct: 121 PNYDGTEMIPAVMPTKVPTLLVNGSSG 147


>gi|295394160|gb|ADG03691.1| DNA gyrase subunit A [Streptococcus infantis]
          Length = 175

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 93/174 (53%), Positives = 134/174 (77%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E
Sbjct: 121 MVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLME 174


>gi|832878|gb|AAA67419.1| DNA gyrase [Aliivibrio salmonicida]
          Length = 147

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 87/147 (59%), Positives = 115/147 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR++ AM  +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRI 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM+++A  +L  +D++ VD+   Y+  
Sbjct: 61  AQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGT 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +  P V P++ PNLL NG+SGIAVGMA
Sbjct: 121 EQIPAVLPTRVPNLLVNGSSGIAVGMA 147


>gi|38327349|gb|AAR17702.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327351|gb|AAR17703.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327407|gb|AAR17731.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327409|gb|AAR17732.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 82/150 (54%), Positives = 115/150 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++E+ V+F   Y+  + EP+V P++FP L
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|295394158|gb|ADG03690.1| DNA gyrase subunit A [Streptococcus gordonii]
          Length = 175

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 132/174 (75%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFIDNYDANEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE +   ++E
Sbjct: 121 IVLPARFPNLLVNGATGIAVGMATNIPPHNLAESIDAVKLVMDNPEATTRDIME 174


>gi|238810566|dbj|BAH70257.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810568|dbj|BAH70258.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810570|dbj|BAH70259.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810572|dbj|BAH70260.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810574|dbj|BAH70261.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810576|dbj|BAH70262.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810578|dbj|BAH70263.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810580|dbj|BAH70264.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810582|dbj|BAH70265.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810584|dbj|BAH70266.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810586|dbj|BAH70267.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 74/155 (47%), Positives = 108/155 (69%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +  
Sbjct: 2   SELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|238810510|dbj|BAH70229.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810512|dbj|BAH70230.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810514|dbj|BAH70231.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 74/155 (47%), Positives = 108/155 (69%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +  
Sbjct: 2   SELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|37999014|dbj|BAD00077.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 176

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 81/174 (46%), Positives = 122/174 (70%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
            +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 121 YLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 174


>gi|295394178|gb|ADG03700.1| DNA gyrase subunit A [Streptococcus sanguinis SK1]
          Length = 175

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 132/174 (75%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPEKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VD+ D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDYIDNYDASEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           VV P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+ +   ++E
Sbjct: 121 VVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDATTRDIME 174


>gi|192382604|gb|ACF04323.1| GyrA [Neisseria gonorrhoeae]
          Length = 148

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 114/148 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|295394152|gb|ADG03687.1| DNA gyrase subunit A [Streptococcus anginosus]
          Length = 175

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 90/174 (51%), Positives = 132/174 (75%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R+ L+ G GNFG++DGD  AA RYTEARM++++  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGPAAQRYTEARMSKISLEMLRDINKNTVDFADNYDSSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V PS+FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++   L+E
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPDVTTHDLME 174


>gi|295394156|gb|ADG03689.1| DNA gyrase subunit A [Streptococcus cristatus]
          Length = 175

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 132/174 (75%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VD+ D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDYIDNYDASEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE +   ++E
Sbjct: 121 MVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPEATTRDIME 174


>gi|37999024|dbj|BAD00082.1| DNA topoisomerase IV subunit C [Streptococcus porcinus]
          Length = 176

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 121/175 (69%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M + G  F   F+KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMYKDGNTFEKGFRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+++++ 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEISG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ ++++ V F   +++ + EP V P+ +PNLL NG +GI+ G AT IP HN+
Sbjct: 121 YLLQDIEKNTVPFAWNFDDTEKEPTVLPAAYPNLLVNGATGISAGYATDIPPHNL 175


>gi|295394162|gb|ADG03692.1| DNA gyrase subunit A [Streptococcus intermedius]
          Length = 175

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 90/174 (51%), Positives = 132/174 (75%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R+ L+ G GNFG++DGD  AA RYTEARM++++  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGPAAQRYTEARMSKISLEMLRDINKNTVDFADNYDSSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V PS+FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++   L+E
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLIMDNPDVTTRDLME 174


>gi|192382562|gb|ACF04302.1| GyrA [Neisseria meningitidis]
 gi|192382564|gb|ACF04303.1| GyrA [Neisseria meningitidis]
 gi|192382566|gb|ACF04304.1| GyrA [Neisseria meningitidis]
 gi|192382568|gb|ACF04305.1| GyrA [Neisseria meningitidis]
 gi|192382570|gb|ACF04306.1| GyrA [Neisseria meningitidis]
 gi|192382572|gb|ACF04307.1| GyrA [Neisseria meningitidis]
 gi|192382574|gb|ACF04308.1| GyrA [Neisseria meningitidis]
 gi|192382576|gb|ACF04309.1| GyrA [Neisseria meningitidis]
 gi|192382578|gb|ACF04310.1| GyrA [Neisseria meningitidis]
 gi|192382580|gb|ACF04311.1| GyrA [Neisseria meningitidis]
 gi|192382616|gb|ACF04329.1| GyrA [Neisseria meningitidis]
 gi|192382618|gb|ACF04330.1| GyrA [Neisseria lactamica]
 gi|192382624|gb|ACF04333.1| GyrA [Neisseria lactamica]
 gi|192382626|gb|ACF04334.1| GyrA [Neisseria lactamica]
 gi|192382632|gb|ACF04337.1| GyrA [Neisseria lactamica]
 gi|192382634|gb|ACF04338.1| GyrA [Neisseria lactamica]
 gi|192382636|gb|ACF04339.1| GyrA [Neisseria meningitidis]
 gi|192382638|gb|ACF04340.1| GyrA [Neisseria meningitidis]
 gi|192382640|gb|ACF04341.1| GyrA [Neisseria meningitidis]
 gi|192382642|gb|ACF04342.1| GyrA [Neisseria meningitidis]
 gi|192382646|gb|ACF04344.1| GyrA [Neisseria meningitidis]
 gi|192382648|gb|ACF04345.1| GyrA [Neisseria meningitidis]
 gi|192382654|gb|ACF04348.1| GyrA [Neisseria meningitidis]
 gi|192382656|gb|ACF04349.1| GyrA [Neisseria meningitidis]
 gi|192382660|gb|ACF04351.1| GyrA [Neisseria meningitidis]
 gi|192382662|gb|ACF04352.1| GyrA [Neisseria meningitidis]
 gi|192382664|gb|ACF04353.1| GyrA [Neisseria meningitidis]
 gi|192382666|gb|ACF04354.1| GyrA [Neisseria meningitidis]
 gi|192382668|gb|ACF04355.1| GyrA [Neisseria meningitidis]
 gi|192382670|gb|ACF04356.1| GyrA [Neisseria meningitidis]
 gi|192382672|gb|ACF04357.1| GyrA [Neisseria meningitidis]
 gi|192382674|gb|ACF04358.1| GyrA [Neisseria meningitidis]
 gi|192382676|gb|ACF04359.1| GyrA [Neisseria meningitidis]
 gi|192382678|gb|ACF04360.1| GyrA [Neisseria meningitidis]
 gi|192382680|gb|ACF04361.1| GyrA [Neisseria meningitidis]
 gi|192382682|gb|ACF04362.1| GyrA [Neisseria meningitidis]
 gi|192382684|gb|ACF04363.1| GyrA [Neisseria meningitidis]
 gi|192382686|gb|ACF04364.1| GyrA [Neisseria meningitidis]
 gi|192382688|gb|ACF04365.1| GyrA [Neisseria meningitidis]
 gi|192382690|gb|ACF04366.1| GyrA [Neisseria meningitidis]
 gi|192382692|gb|ACF04367.1| GyrA [Neisseria meningitidis]
 gi|192382694|gb|ACF04368.1| GyrA [Neisseria meningitidis]
 gi|192382696|gb|ACF04369.1| GyrA [Neisseria meningitidis]
 gi|192382698|gb|ACF04370.1| GyrA [Neisseria meningitidis]
 gi|192382700|gb|ACF04371.1| GyrA [Neisseria meningitidis]
 gi|192382702|gb|ACF04372.1| GyrA [Neisseria meningitidis]
 gi|192382704|gb|ACF04373.1| GyrA [Neisseria meningitidis]
 gi|192382706|gb|ACF04374.1| GyrA [Neisseria meningitidis]
 gi|192382708|gb|ACF04375.1| GyrA [Neisseria lactamica]
 gi|192382710|gb|ACF04376.1| GyrA [Neisseria meningitidis]
 gi|192382712|gb|ACF04377.1| GyrA [Neisseria meningitidis]
 gi|192382716|gb|ACF04379.1| GyrA [Neisseria lactamica]
 gi|192382718|gb|ACF04380.1| GyrA [Neisseria lactamica]
 gi|192382720|gb|ACF04381.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 114/148 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|192382620|gb|ACF04331.1| GyrA [Neisseria lactamica]
 gi|192382622|gb|ACF04332.1| GyrA [Neisseria lactamica]
 gi|192382630|gb|ACF04336.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 114/148 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELRNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|308198963|dbj|BAJ22616.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 176

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 100/172 (58%), Positives = 130/172 (75%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+A
Sbjct: 4   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMA 63

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D VDF   Y+  +
Sbjct: 64  QDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSE 123

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + S+
Sbjct: 124 SEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASL 175


>gi|330939843|gb|EGH43077.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 173

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 79/173 (45%), Positives = 114/173 (65%), Gaps = 1/173 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L 
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILL 173


>gi|37999022|dbj|BAD00081.1| DNA topoisomerase IV subunit C [Streptococcus iniae]
          Length = 176

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 121/175 (69%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+++++ 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEISG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 121 YLLQDIEKYTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|257362148|gb|ACV53175.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 94/186 (50%), Positives = 136/186 (73%), Gaps = 1/186 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y ++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYKAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           PF  RYPLI GQGN+G  D   S AA RYTE++++++AE++L  + +  VD++  ++   
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EP   P++ P++L NGT GIAVGMAT IP HN+ E+ EA++ L++NP+ S+ +L+  + 
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 223 GPDFPT 228
           GPD+PT
Sbjct: 181 GPDYPT 186


>gi|257362154|gb|ACV53177.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 94/186 (50%), Positives = 138/186 (74%), Gaps = 1/186 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD++ Y+++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDRACYEAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           PF  RYPLI GQGN+G  D   S AA RYTE++++++AE++L  + +  VD++  ++   
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EP   P++ P++L NGT GIAVGMAT IP HN+ E+ EA++ L++NP+ S+ +L+  + 
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 223 GPDFPT 228
           GPD+PT
Sbjct: 181 GPDYPT 186


>gi|38327353|gb|AAR17704.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327405|gb|AAR17730.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 82/150 (54%), Positives = 115/150 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDFAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++E+ V+F   Y+  + EP+V P++FP L
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|192382650|gb|ACF04346.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 114/148 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGREHEPLVLPTRFP 148


>gi|238810564|dbj|BAH70256.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 74/155 (47%), Positives = 108/155 (69%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +  
Sbjct: 2   SELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  PHVKSARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 122 YTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|257362157|gb|ACV53178.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 94/186 (50%), Positives = 137/186 (73%), Gaps = 1/186 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDYACYEAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           PF  RYPLI GQGN+G  D   S AA RYTE++++++AE++L  + +  VD++  ++   
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EP   P++ P++L NGT GIAVGMAT IP HN+ E+ EA++ L++NP+ S+ +L+  + 
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 223 GPDFPT 228
           GPD+PT
Sbjct: 181 GPDYPT 186


>gi|21732251|emb|CAD37174.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732253|emb|CAD37175.2| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  299 bits (766), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 99/154 (64%), Positives = 125/154 (81%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           D RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ 
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQD 60

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           F  RYP I GQGNFG+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SE
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           P V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|192382628|gb|ACF04335.1| GyrA [Neisseria lactamica]
 gi|192382644|gb|ACF04343.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 114/148 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|38327357|gb|AAR17706.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327359|gb|AAR17707.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327363|gb|AAR17709.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327365|gb|AAR17710.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327369|gb|AAR17712.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327371|gb|AAR17713.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327373|gb|AAR17714.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327379|gb|AAR17717.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327383|gb|AAR17719.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327387|gb|AAR17721.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327393|gb|AAR17724.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327395|gb|AAR17725.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327397|gb|AAR17726.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327399|gb|AAR17727.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327401|gb|AAR17728.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 81/150 (54%), Positives = 114/150 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++E+ V+F   Y+  + EP+V P++FP L
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|332637207|ref|ZP_08416070.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella cibaria KACC 11862]
          Length = 758

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 165/750 (22%), Positives = 306/750 (40%), Gaps = 65/750 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L  +      L  ++++ +  Y ++   +R++P++ DG KPV RRI++AM+   L   A
Sbjct: 10  DLKHDKPVVEDLDQSMKQAFTNYGIAVASDRSVPNVLDGLKPVQRRILYAMTMAKLSPTA 69

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL--ISGQGNFGNIDGDSAAA 128
            FKKS  +VG+V+G  HPHGD   Y S+  L Q FV  +PL  I G G+F +I G+ AAA
Sbjct: 70  KFKKSQTVVGDVMGNWHPHGDN--YGSVDYLTQNFV--FPLAPIEGHGSFTDISGNPAAA 125

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT-SGIAVGM 187
            RYTE R+++  +L++  + E  V + D Y+     P VFP+K P LL NG  +GIAVG 
Sbjct: 126 ARYTEVRLSRFGQLMVNDLSEKLVPYEDNYDNTKRMPRVFPAKLPYLLINGVKTGIAVGF 185

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +SI  HN  +        I  P+++++K +  + GPD PTGG +      +   Y+ G 
Sbjct: 186 TSSIAPHNPVDATRLLKQYIKTPKMTLDKAISILQGPDLPTGGTLYG---DVRSYYKTGV 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G F+      + +       +++TE+PY++    +  ++K+ +LI   ++  +  I D +
Sbjct: 243 GKFQNAG--TIIDSDEDKNTLIITEVPYRMGGSINSYLDKVKDLIADGKLKPIRSIDDFT 300

Query: 306 AEDVR-----IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            ++        +      + D +     +F  +D+   + L    L  G  P+   L   
Sbjct: 301 TDEDIANNKVRIEVTLQNNYDHEQAKTLLFQKTDLRQTYSLEWMALD-GLTPKRYTLMQY 359

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------ 408
           L+     +  ++ R     ++    R+EI+ GL+     I  I+   +            
Sbjct: 360 LQTVANFQHTLVVREYKADLEKASARLEIVDGLIQVPDLIQAIVHAAQNTDGKADLMQVL 419

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
              K  P  ++ FS TE Q DAI ++R+  L +++   + +E  +L          +   
Sbjct: 420 QGLKTIPAQMASFSFTERQADAIASMRVYQLNRVDAQALVAEKADLEERIAMAKRYIEEP 479

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
             +   ++  + E  +   K     RR T   E     K      +       V I+   
Sbjct: 480 DLRVQLLSERLDEQIKALKKDGFGSRRTTLGDESELKAKVAKTVIINP-----VTITIDR 534

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT-----LPAGNLLSG 583
           +      +         +  D ++  L     D + + + DG+        L        
Sbjct: 535 Y-----GYIKMTDKREVETDDEIQFVLQTTDDDWLEMFTADGRMLQVGLSSLKKYKARDN 589

Query: 584 RGHGEAIQLLIDLNHNQDIVTAF------VYDSTCKLLVVSSKGNAFI--VEESEIIANT 635
                A+ +  D  +  D           + ++  ++++VS +G A      ES++   T
Sbjct: 590 NRGDAAMAVFADNGYTGDDRVVLWTTRKHLDEAGTEIVMVSKRGLAKRFATAESKLTTKT 649

Query: 636 -RKGKTFLKVSSE-EKMKLVVKVTGDHV----AVVGENRKLLIFSIDQIPEMSRGKGVRL 689
            RK      V    +++  V  V+   +     +     +     +  +   +   G   
Sbjct: 650 LRKTVEAYPVKDGSDELLFVQLVSQTEIKSFDIIAIRGEEYKRIKLSAVKLQASAAGAGT 709

Query: 690 QSYKD----GGISDVICFKICEGLTWIDSA 715
           Q++ D      +  V      E      + 
Sbjct: 710 QTFVDKKNSADLDAVYILNGPETDLLKVAG 739


>gi|308198967|dbj|BAJ22618.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308198971|dbj|BAJ22620.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308199023|dbj|BAJ22646.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308199057|dbj|BAJ22663.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 150

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/150 (65%), Positives = 122/150 (81%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            RA+PD RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LV
Sbjct: 1   GRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALV 60

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQ F  RYP I GQGNFG+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y+
Sbjct: 61  RMAQDFSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           +  SEP V P++ PNLL NG+SGIAVGMAT
Sbjct: 121 DSMSEPDVLPARVPNLLLNGSSGIAVGMAT 150


>gi|38677892|emb|CAE30286.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 225

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 167/225 (74%), Gaps = 1/225 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++ 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+  NP+I++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 122 GVLAVSKNPDITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEET 180

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES 
Sbjct: 181 SSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESD 225


>gi|36988433|gb|AAQ87910.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|36988448|gb|AAQ87911.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 146

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 79/146 (54%), Positives = 111/146 (76%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY+
Sbjct: 1   VIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYN 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+  
Sbjct: 61  TIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSG 182
            Y+  +  P V P+K P LL NG+SG
Sbjct: 121 NYDGTEMIPAVMPTKVPTLLVNGSSG 146


>gi|261414926|ref|YP_003248609.1| DNA topoisomerase (ATP-hydrolyzing) [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371382|gb|ACX74127.1| DNA topoisomerase (ATP-hydrolyzing) [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325658|gb|ADL24859.1| putative DNA topoisomerase IV, A subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 846

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 148/668 (22%), Positives = 274/668 (41%), Gaps = 72/668 (10%)

Query: 6   ISNSNTLVEENVKAVS-LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++         +  V+ L    +  +L YA   I +RA+P   DG KPV RRI+H+M E 
Sbjct: 1   MNQETPDTTLGLSNVNHLERLYDGWFLDYASYVILDRAVPYFEDGLKPVQRRILHSMFE- 59

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DG 123
             +    ++K A IVG  +   HPHGD S+ D+LV L Q    +  LI  QGN+GN   G
Sbjct: 60  --NHDGRYQKVATIVGRTMA-YHPHGDASIGDALVGLGQ----KNLLIDTQGNWGNPYTG 112

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RY E R+T  A  ++   + +  ++  +Y+    EPV  P KFP LLA G  GI
Sbjct: 113 DRAAAPRYIEGRLTPFAVDVV--FNPETTEWIPSYDGRSEEPVTLPVKFPLLLAQGVDGI 170

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVG++TSI  HN +E+CEA++A +   +        + + PDF TGGII  S       Y
Sbjct: 171 AVGLSTSILPHNFRELCEASIACLRGKK--------FTLYPDFFTGGIIDVSD------Y 216

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             G+ G +V+ R  +E+V   +  I   EIPY      LIE I +    K    ++ + D
Sbjct: 217 NDGQRGGKVKVRAKIEKVDNKTLAI--REIPYGTTTVSLIESIVKA-NDKGKIKIKHVDD 273

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            +++ V I+        DP + +++++  +D E         + + + P+ + +  ILK 
Sbjct: 274 NTSQGVEIL-VHLQPGTDPQVAIDALYAFTDCEKSLSP-CTCVIIDKHPKFVGVSDILKL 331

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI-----------DEIIAIIRNEDK 412
              H  ++L    +  ++ ++ +  +     I                ++II ++R    
Sbjct: 332 NTEHTVKLLEWELANELKHLEDKWHMTTLEKIFIEKEVYEVIKKAKDREQIIRLVREGLT 391

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           P    + R ++T+ ++  ++ + +R +   +  +    L  L     K      + +   
Sbjct: 392 PYLKRLHRQTVTDEEIGKLIEIPIRRISHYDREKADQLLQELEENIAKCKY---NQEHII 448

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
           +      + + + +    +   RRT   E  + +             + V ++N+    +
Sbjct: 449 DYAVNHFKNILKKYG---EGKERRTQIAEFGKVNA------------VHVALANQKLYVN 493

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
            K   V             +        D +++   DG    +   +          ++ 
Sbjct: 494 RKEGFVG------TGMKKEEYLFDVSEYDDLIVFKADGSFKVVKVSDKDFVGKDIILVEK 547

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE-IIANTRKGKTFL----KVSSE 647
               +  + I      D       +       +  + +  +   + G   L     ++ E
Sbjct: 548 FNK-DDERHIYNVIHQDGKDGYAYIKRFNVGGVTRDKDYYMGKNKPGSKILYMSSNMNGE 606

Query: 648 EKMKLVVK 655
            ++  V+ 
Sbjct: 607 AEVVEVIL 614


>gi|50660404|gb|AAT80772.1| gyrase A [Brevundimonas diminuta ATCC 11568]
          Length = 156

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 85/156 (54%), Positives = 114/156 (73%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD RDG KPVHRRI+++M ++ +    A+ K AR+VG+V+G+ HPHGD SVY 
Sbjct: 1   VIVSRALPDARDGLKPVHRRILYSMHDLNMTPERAYSKCARVVGDVLGRFHPHGDASVYM 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +LVR+AQ F     L+ GQGNFG++DGD  A+ RYTEA+M   A  +L  +D+D VDF+ 
Sbjct: 61  ALVRMAQDFSMGLMLVDGQGNFGSVDGDMPASMRYTEAKMAPAAVALLTDIDKDTVDFQP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+E++ EPVV P++ PNLL NG  GIAVGMAT+IP
Sbjct: 121 NYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIP 156


>gi|21732260|emb|CAD37178.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/154 (64%), Positives = 125/154 (81%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           D RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ 
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQD 60

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           F  RYP I GQGNFG+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SE
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           P V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|302552702|ref|ZP_07305044.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470320|gb|EFL33413.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 685

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 148/591 (25%), Positives = 265/591 (44%), Gaps = 26/591 (4%)

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRESIV 240
              AT+IP HN++E+   A   ++NPE S E+L    +E I GPDFPTG  +V  R+ I 
Sbjct: 9   SAWATNIPPHNLREVASGAQWYLENPEASHEELLDALIERIKGPDFPTGA-LVVGRKGIE 67

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG   +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D
Sbjct: 68  EAYRTGRGSITMRAVIEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIAD 126

Query: 301 IRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +RDE S+   + ++    R     +++ +++  +D++T F  NM  L    VP+ + LD 
Sbjct: 127 VRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GVPRTLSLDA 185

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D  +     
Sbjct: 186 FIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARHG 245

Query: 420 RFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 + E Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  +Q   ++
Sbjct: 246 LMDLLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQAKISEYNEILASPVRQRGIVS 305

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+  + E +                     A     +       +  +     R+ K  
Sbjct: 306 EELAAIVEKYGDDRQTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRG 365

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI 594
              +     KE D +     + T   +L  +  G+ Y +    L        G+ +  L+
Sbjct: 366 GKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRVKGYELPDAGRDARGQHVANLL 425

Query: 595 DLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----S 646
               ++   +I+    Y++   L++ +  G        +  +    G   + +      S
Sbjct: 426 AFQPDEAIAEILAIRDYEAVPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLRSMEDGS 485

Query: 647 EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVIC 702
           ++++     V + D + ++ +  + + F+     +  M R   GV+  S+++G     + 
Sbjct: 486 DDELIGAELVSSDDDLLLISKKAQSIRFTASDETLRPMGRATSGVKGMSFREGDELLSMN 545

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  G     +    Y +  N     +  RGG+G    K     G  + +
Sbjct: 546 V-VRPGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 595


>gi|192382582|gb|ACF04312.1| GyrA [Neisseria gonorrhoeae]
 gi|192382584|gb|ACF04313.1| GyrA [Neisseria gonorrhoeae]
 gi|192382586|gb|ACF04314.1| GyrA [Neisseria gonorrhoeae]
 gi|192382588|gb|ACF04315.1| GyrA [Neisseria gonorrhoeae]
 gi|192382590|gb|ACF04316.1| GyrA [Neisseria gonorrhoeae]
 gi|192382592|gb|ACF04317.1| GyrA [Neisseria gonorrhoeae]
 gi|192382594|gb|ACF04318.1| GyrA [Neisseria gonorrhoeae]
 gi|192382596|gb|ACF04319.1| GyrA [Neisseria gonorrhoeae]
 gi|192382598|gb|ACF04320.1| GyrA [Neisseria gonorrhoeae]
 gi|192382600|gb|ACF04321.1| GyrA [Neisseria gonorrhoeae]
 gi|192382602|gb|ACF04322.1| GyrA [Neisseria gonorrhoeae]
 gi|192382606|gb|ACF04324.1| GyrA [Neisseria gonorrhoeae]
 gi|192382608|gb|ACF04325.1| GyrA [Neisseria gonorrhoeae]
 gi|192382610|gb|ACF04326.1| GyrA [Neisseria gonorrhoeae]
 gi|192382612|gb|ACF04327.1| GyrA [Neisseria gonorrhoeae]
 gi|192382614|gb|ACF04328.1| GyrA [Neisseria gonorrhoeae]
          Length = 148

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 80/148 (54%), Positives = 113/148 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|38327355|gb|AAR17705.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327361|gb|AAR17708.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327367|gb|AAR17711.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327375|gb|AAR17715.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327377|gb|AAR17716.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327381|gb|AAR17718.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327385|gb|AAR17720.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327389|gb|AAR17722.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327391|gb|AAR17723.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327403|gb|AAR17729.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 81/150 (54%), Positives = 115/150 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++E+ V+F   Y+  + EP+V P++FP L
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|38677890|emb|CAE30285.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 224

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 167/224 (74%), Gaps = 1/224 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++ 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+  NPEI++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 122 GVLAVSKNPEITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEET 180

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 181 SSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 224


>gi|192382714|gb|ACF04378.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 80/148 (54%), Positives = 113/148 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDTAVYHTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|21732255|emb|CAD37176.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732258|emb|CAD37177.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732262|emb|CAD37179.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732264|emb|CAD37180.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 99/154 (64%), Positives = 125/154 (81%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           D RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ 
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQD 60

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           F  RYP I GQGNFG+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SE
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           P V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|21732266|emb|CAD37181.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 98/154 (63%), Positives = 124/154 (80%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           D RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ 
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQD 60

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           F  RYP I GQGNFG+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SE
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           P V P++ PNLL NG+SGIA GMAT+IP H++ E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAGGMATNIPPHSLNE 154


>gi|192382658|gb|ACF04350.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 80/148 (54%), Positives = 113/148 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  R +PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRELPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|257362151|gb|ACV53176.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 93/186 (50%), Positives = 136/186 (73%), Gaps = 1/186 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPH D + Y+++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHCDSACYEAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           PF  RYPLI GQGN+G  D   S AA RYTE++++++AE++L  + +  VD++  ++   
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EP   P++ P++L NGT GIAVGMAT IP HN+ E+ EA++ L++NP+ S+ +L+  + 
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 223 GPDFPT 228
           GPD+PT
Sbjct: 181 GPDYPT 186


>gi|294992605|gb|ADF57429.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|208972181|gb|ACI32674.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 138

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 78/138 (56%), Positives = 108/138 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 120

Query: 146 GVDEDAVDFRDTYNEEDS 163
            ++++ VDF D Y+  + 
Sbjct: 121 DLEKETVDFVDNYDGTEK 138


>gi|294992579|gb|ADF57416.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992581|gb|ADF57417.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992587|gb|ADF57420.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992591|gb|ADF57422.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992599|gb|ADF57426.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|294992603|gb|ADF57428.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDASIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|294992609|gb|ADF57431.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992613|gb|ADF57433.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|161511947|emb|CAP45393.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 156

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 89/149 (59%), Positives = 119/149 (79%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  
Sbjct: 61  AQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           +  P V P+K PNLL NG+SGIAVGMAT 
Sbjct: 121 EKIPDVMPTKIPNLLVNGSSGIAVGMATK 149


>gi|36988470|gb|AAQ87913.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 145

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 79/145 (54%), Positives = 111/145 (76%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY++
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYNT 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+   
Sbjct: 61  IVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSG 182
           Y+  +  P V P+K P LL NG+SG
Sbjct: 121 YDGTEMIPAVMPTKVPTLLVNGSSG 145


>gi|294992615|gb|ADF57434.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|294992601|gb|ADF57427.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 118/167 (70%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL N +SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNESSGISAGYATDIPPHNL 167


>gi|118132715|gb|ABK60210.1| topoisomerase IV [Shigella boydii]
          Length = 167

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 88/167 (52%), Positives = 124/167 (74%), Gaps = 1/167 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V 
Sbjct: 1   RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVL 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L  + +   D+   ++
Sbjct: 61  MAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
               EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+AL
Sbjct: 121 GTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 167


>gi|294992597|gb|ADF57425.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 118/167 (70%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDSSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|38677888|emb|CAE30284.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 222

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/223 (52%), Positives = 166/223 (74%), Gaps = 1/223 (0%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  
Sbjct: 1   IGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISME 60

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ + 
Sbjct: 61  ILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDG 120

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            LA+  NP+I++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE  
Sbjct: 121 VLAVSKNPDITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEETS 179

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 SGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 222


>gi|161511945|emb|CAP45392.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 164

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 86/147 (58%), Positives = 116/147 (78%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 8   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 67

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P
Sbjct: 68  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 127

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIP 192
            V P+K PNLL NG+SGIAVGMAT+  
Sbjct: 128 DVMPTKIPNLLVNGSSGIAVGMATNFL 154


>gi|310751822|gb|ADP09360.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751824|gb|ADP09361.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751826|gb|ADP09362.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751828|gb|ADP09363.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751830|gb|ADP09364.1| DNA gyrase A [Pseudomonas andersonii]
          Length = 142

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 85/142 (59%), Positives = 112/142 (78%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR++ AMSE+G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           Y L+ GQGNFG++DGD+AAA RYTE RMT++A  +L  +D++ VD+   Y+  +  P V 
Sbjct: 61  YLLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVM 120

Query: 169 PSKFPNLLANGTSGIAVGMATS 190
           P+K PNLL NG+SGIAVGMAT+
Sbjct: 121 PTKVPNLLINGSSGIAVGMATN 142


>gi|294992607|gb|ADF57430.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|294992583|gb|ADF57418.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDPSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|294992595|gb|ADF57424.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+Y+++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|149346166|gb|ABR23654.1| gyrase A [Aeromonas veronii bv. sobria]
          Length = 143

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 82/143 (57%), Positives = 111/143 (77%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD+   Y+  
Sbjct: 61  AQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGT 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIA 184
           +  P V P+K PNLL NG+SGIA
Sbjct: 121 EMIPAVMPTKVPNLLVNGSSGIA 143


>gi|294992585|gb|ADF57419.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992593|gb|ADF57423.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|208972173|gb|ACI32670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|208972175|gb|ACI32671.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|208972179|gb|ACI32673.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 135

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 77/135 (57%), Positives = 106/135 (78%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNEEDS 163
           ++ VDF D Y+  + 
Sbjct: 121 KETVDFVDNYDGTEK 135


>gi|36988462|gb|AAQ87912.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 144

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 78/144 (54%), Positives = 110/144 (76%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY+++
Sbjct: 1   VGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYNTI 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+   Y
Sbjct: 61  VRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSG 182
           +  +  P V P+K P LL NG+SG
Sbjct: 121 DGTEMIPAVMPTKVPTLLVNGSSG 144


>gi|294992611|gb|ADF57432.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|61844861|emb|CAG44506.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844863|emb|CAG44507.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070001]
 gi|61844867|emb|CAG44508.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844869|emb|CAG44509.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844873|emb|CAG44510.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070002]
 gi|61844875|emb|CAG44511.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070003]
 gi|61844877|emb|CAG44512.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070005]
 gi|61844881|emb|CAG44513.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 19980863]
 gi|61844883|emb|CAG44514.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070007]
          Length = 257

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 108/258 (41%), Positives = 157/258 (60%), Gaps = 6/258 (2%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEAR
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP HN
Sbjct: 61  LTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHN 120

Query: 196 VQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ +A          + E ++  ++  + GPDFPT G ++   +   ++Y+ GRG  R
Sbjct: 121 LRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAG-LIVGSQGTADAYKTGRGSIR 179

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+ S     
Sbjct: 180 MRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGL 239

Query: 311 IVLFPKNRSLDPDLLMES 328
            ++    R     +++ +
Sbjct: 240 RIVIEIKRDAVAKVVINN 257


>gi|1296993|emb|CAA64978.1| DNA gyrase subunit A [Rhizobium phaseoli]
          Length = 148

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 113/148 (76%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+GK HPHG+ ++YD+L R+AQP+ 
Sbjct: 1   RDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQPWS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            R PLI GQGNFG++DGD  AA RYTE R+ + A  +L  +D++ VDFRD Y+   SEPV
Sbjct: 61  LRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P+KFPNLL NG  GIAVGMAT+IP H
Sbjct: 121 VVPAKFPNLLVNGAGGIAVGMATNIPPH 148


>gi|294992589|gb|ADF57421.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  293 bits (749), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|325104895|ref|YP_004274549.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter saltans DSM 12145]
 gi|324973743|gb|ADY52727.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter saltans DSM 12145]
          Length = 898

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 160/744 (21%), Positives = 290/744 (38%), Gaps = 91/744 (12%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  +   +  NV  + +    E  +L YA   I +RA+P + DG KPV RRI+H++ EM 
Sbjct: 1   MEENEDEILHNV--IPISGLYENWFLDYASYVILDRAVPHINDGLKPVQRRILHSLKEM- 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
                 F K A ++G  + K HPHGD S+ D++V++ Q    +  LI  QGN+G+ I GD
Sbjct: 58  --DDGRFNKVANVIGNTM-KYHPHGDASIGDAMVQIGQ----KDLLIDTQGNWGDPITGD 110

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RY E R+++ A  ++   + D  D++ +Y+  + EPV  P KFP LLA G  GIA
Sbjct: 111 SAAAARYIEGRLSKFALEVV--FNPDTTDWQLSYDGRNREPVTLPVKFPLLLAQGAEGIA 168

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VG+AT +  HN  E+ +A++ ++     +I         PDFPTGG+   S+      Y 
Sbjct: 169 VGLATKVMPHNFIELIDASIEVLRGNRPNIL--------PDFPTGGLADFSQ------YN 214

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+ G ++R R  + E+ +    +V++EIPY    + LI+ I      K    ++ I D 
Sbjct: 215 EGQRGGKIRVRAKISELDK--KTLVISEIPYSTTTTGLIDSII-AANDKGKIKIKKIEDN 271

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +A++V IV       + PDL +++++  +  ET        +     P  M ++ IL E 
Sbjct: 272 TAKNVEIV-IHLAPGISPDLTIDALYAFTACETSISP-NTCVIKKDKPHFMSVNDILIES 329

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY-------------LNIDEIIAIIRNED 411
             + + +L R    ++  +  ++     L I                N +E++ ++    
Sbjct: 330 TNYTKALLKRELEIKLHDLQEKIFFSSLLKIFIQEGMYKNPEYENSSNFEEVVKVLHRLF 389

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
            P         +       +++  + S+ + +  +   ++  L  +      +  + +  
Sbjct: 390 DPFK-SSLYREIEAEDFKKLIDKPMSSITRFDVKKADEQMAALEKDI---TLVKKNLRHL 445

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
            +        +K+ F K  +       F  V  A  A              V +      
Sbjct: 446 TDFAIDYFLRLKDKFGKGRERKTEIRAFDRVEAAHVALANVKFYVNREDGFVGTGLKKDE 505

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                                        D I++   DG        +          + 
Sbjct: 506 ---------------------YLFDCSDIDDIIVFREDGSFIVTKVQDKTFVGKGILHVG 544

Query: 592 LLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF---LKVSSE 647
           +    +        +    S    +   + G     +E ++   T+  K        + E
Sbjct: 545 IFKKNDDRTTYNMIYRDGKSGTAYIKRFAVGGVTRDKEYDLTKGTKGSKVLYFTANPNGE 604

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRL-------QSYKDGGI 697
            ++  +          + + RK L F ID  +I    RG +G           + K  G+
Sbjct: 605 AEVVNIALKP------MSKLRK-LSFDIDFAEIAIKGRGSQGNIATKFAIKKITLKSKGV 657

Query: 698 SDVICFKICEGLTWIDSAGRSYNR 721
           S +   KI             + +
Sbjct: 658 STLAGRKIWYDDIVKRLNENGHGK 681


>gi|108937148|gb|ABG23386.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937150|gb|ABG23387.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937152|gb|ABG23388.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937154|gb|ABG23389.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937156|gb|ABG23390.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937158|gb|ABG23391.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876161|gb|ABK30940.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/156 (57%), Positives = 114/156 (73%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD S Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|311350453|gb|ADP92423.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 115/144 (79%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIA 184
            +  P V P+K PNLL NG+SGIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|37998982|dbj|BAD00061.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 140

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|193735122|gb|ACF20070.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 89/156 (57%), Positives = 113/156 (72%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD S Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYQ 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|37998992|dbj|BAD00066.1| DNA gyrase subunit A [Streptococcus porcinus]
          Length = 140

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLK 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|1834401|emb|CAA70292.1| DNA Gyrase subunit A [Chlorobium limicola]
          Length = 148

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/148 (61%), Positives = 112/148 (75%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++ M E+GL  G   KKSARIVGEV+GK HPHGD +VYDSLVR+ Q F+
Sbjct: 1   RDGLKPVHRRVLYGMHELGLQAGKPHKKSARIVGEVLGKYHPHGDTAVYDSLVRMVQDFL 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RYPLI GQGNFG++DGDS AA RYTE RM  +A  +L+ +D++ VDF   +++   EP 
Sbjct: 61  LRYPLIDGQGNFGSVDGDSPAAMRYTEVRMKPIAGEMLKDLDKETVDFSLNFDDSLEEPT 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P+  PNLL NG SGIAVGMAT+IP H
Sbjct: 121 VLPAAIPNLLVNGPSGIAVGMATNIPPH 148


>gi|37998990|dbj|BAD00065.1| DNA gyrase subunit A [Streptococcus iniae]
          Length = 140

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 70/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF++ Y+  + EP
Sbjct: 121 DINKNTVDFQENYDGSEREP 140


>gi|219815929|gb|ACL37051.1| GyrA [Salmonella enterica]
          Length = 138

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/138 (56%), Positives = 108/138 (78%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+V
Sbjct: 1   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++
Sbjct: 61  GDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 120

Query: 140 AELILQGVDEDAVDFRDT 157
           A  ++  ++++ VDF D 
Sbjct: 121 AHELMADLEKETVDFVDN 138


>gi|193735114|gb|ACF20066.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735120|gb|ACF20069.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735126|gb|ACF20072.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 89/156 (57%), Positives = 113/156 (72%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD S Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYG 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|311350429|gb|ADP92412.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350445|gb|ADP92419.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 115/144 (79%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIA 184
            +  P V P+K PNLL NG+SGIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|219815937|gb|ACL37055.1| GyrA [Salmonella enterica]
          Length = 138

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 78/138 (56%), Positives = 108/138 (78%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+
Sbjct: 1   PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 60

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ +
Sbjct: 61  VGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 120

Query: 139 VAELILQGVDEDAVDFRD 156
           +A  ++  ++++ VDF D
Sbjct: 121 IAHELMADLEKETVDFVD 138


>gi|300777684|ref|ZP_07087542.1| DNA topoisomerase 4 subunit A [Chryseobacterium gleum ATCC 35910]
 gi|300503194|gb|EFK34334.1| DNA topoisomerase 4 subunit A [Chryseobacterium gleum ATCC 35910]
          Length = 863

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 124/534 (23%), Positives = 229/534 (42%), Gaps = 43/534 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +     E      +    ++ +L YA   I +RAIP + DG KPV RRI+H+M E+    
Sbjct: 3   TEEYSHEGESLKKVSGLYKDWFLDYASYVILDRAIPSIYDGLKPVQRRIMHSMREL---E 59

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAA 127
              + K A IVG  + K HPHGD S+ D++V++ Q    +  LI  QGN+GNI  GDSAA
Sbjct: 60  DGRYNKVANIVGNTM-KYHPHGDASITDAMVQIGQ----KELLIDTQGNWGNIYTGDSAA 114

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RY EAR+T  A  ++   +    ++  +Y+  ++EP+  P KFP LLA G  GI VG+
Sbjct: 115 AARYIEARLTPFALEVV--FNPKTTEWTKSYDGRNNEPIDLPVKFPLLLAQGVEGIGVGL 172

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T I  HN  E+  A++A +   +  +         PDF T G +  S       Y  G 
Sbjct: 173 STKILPHNFNELINASVAYLKGKKFELY--------PDFLTAGYLDVSE------YNDGH 218

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G +VRAR  + +  + +  +V++E+PY    + LI+ I +     +I + +   + S +
Sbjct: 219 RGGKVRARAKITQTDKHT--LVISELPYSKTTTDLIDSILKANEKGKIKIKKIEDNTSDK 276

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
              ++       + PD  +++++  +D +     N  V+  G  P  M +  ILK    H
Sbjct: 277 VEILIHIH--NDVSPDKTIDALYAFTDCQVTISPNACVIV-GDKPMFMNVSEILKMNTDH 333

Query: 368 RREVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIR--------NEDKPKPVM 417
              +L +     +  +         + + I      +I  +          +        
Sbjct: 334 TVSLLKKELEIELHELQESWHFSSLERIFIENRIYHDIEEVKTWEDVLKTIDAGLKPHTK 393

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
               ++TE  +  +  +R++ + + +  + K  + +L  + E++     + +        
Sbjct: 394 HLLRAVTEEDILKLTEIRIKRISRFDLDKFKENIASLEGKIEQVKY---NLENLIAYAID 450

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
               +++ + K          F  +     A   +          + ++    +
Sbjct: 451 YYLNIQKKYGKDKQRRTELRIFDTIDATKVAVANEKFYANFEEGFIGTSLKKDQ 504


>gi|325954945|ref|YP_004238605.1| DNA topoisomerase (ATP-hydrolyzing) [Weeksella virosa DSM 16922]
 gi|323437563|gb|ADX68027.1| DNA topoisomerase (ATP-hydrolyzing) [Weeksella virosa DSM 16922]
          Length = 847

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 155/682 (22%), Positives = 267/682 (39%), Gaps = 74/682 (10%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +    +E +L YA   I ERAIP + DG KPV RRI+H+M E+       + K A IVG 
Sbjct: 12  ISGMYQEWFLDYASYVILERAIPSIYDGLKPVQRRILHSMREL---EDGRYNKVANIVGN 68

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + K HPHGD S+ D++V++ Q    +  LI  QGN+GNI  GD AAA RY EAR+T+ A
Sbjct: 69  TM-KYHPHGDASITDAIVQIGQ----KDLLIDTQGNWGNILTGDRAAAARYIEARLTKFA 123

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +     ++ +Y+  + EP+  P KFP LLA G  GIAVG++T I  HN  E+ 
Sbjct: 124 LEVVY--NPKTTHWQPSYDGRNKEPIDLPVKFPLLLAQGVEGIAVGLSTKILPHNFIELI 181

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++A +   +        + + PDF TGG I          Y  G  G +VR R  + +
Sbjct: 182 DASIAYLRGKK--------FTLYPDFQTGGYIEV------ADYNDGMRGGKVRIRAKISQ 227

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           V + +  I  +EIP+      LI+ I +    K    +  I D +A DV I+        
Sbjct: 228 VDKTTLKI--SEIPFSTTTGSLIDSILKA-NDKGKIKIRKIEDNTAADVEIL-IHLQTGT 283

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
            PD  +++++  +D E     N  V+   + P+ + +  ILK    +  ++L R     +
Sbjct: 284 SPDKTIDALYAFTDCEVSLSPNACVIDEQK-PEFLSVSEILKRNTDNTVQLLKRELEISL 342

Query: 381 QAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +  +      + + I      +I      E   + +       T + + A+    +  
Sbjct: 343 DELQEQWHFSSLERIFIENRIYHQIEEEETWEGVIETIDKGLKPFTSHLLRAVTEEDIVK 402

Query: 439 LRKLEEYQI-KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
           L ++   +I + +LD        ++  +   K     +        +        G+ R 
Sbjct: 403 LTEIRIKRISRFDLDKADQHILSLEDKIAEVKHHLANLIDYSIAYFKELKTKYGAGKERK 462

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           T                       ++ +++  + + + +               +     
Sbjct: 463 TEI-----------------RTFDIIDASKVAVANTRFYVDRTEGFIGTSLRKDEFLFEC 505

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF----VYDSTCK 613
              D I++   DG                   + +    +        +       +  K
Sbjct: 506 SDIDDIIIFRRDGVMMVTKVEAKTFVGKGILHVGVWRRNDKRTIYNMIYRDGKNGPAYQK 565

Query: 614 LLVVSSKGNAFIVEESEIIANT-RKGKTFL----KVSSEEKMKLVVKVTGDHVAVVGENR 668
              V++     I  + E    T  KG   L      + E ++  V+  T   +       
Sbjct: 566 RFAVTA-----ITRDKEYNLTTGNKGSEVLYFSANPNGEAEVVSVILKTHQRL------- 613

Query: 669 KLLIFSID--QIPEMSRG-KGV 687
           K L F ID   +    R  KG 
Sbjct: 614 KKLKFDIDFADLIVKGRASKGN 635


>gi|46019116|emb|CAE52022.1| gyrase subunit A [Bacillus licheniformis]
          Length = 213

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 113/212 (53%), Positives = 158/212 (74%), Gaps = 1/212 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++ 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+  NPEI++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 122 GVLAVSKNPEITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEET 180

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             G   I++TEIPYQV K+RLIEKIA+L+  K
Sbjct: 181 SSGKPVIIITEIPYQVNKARLIEKIADLVRDK 212


>gi|153025|gb|AAA26636.1| gyrase A [Staphylococcus aureus]
          Length = 146

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 108/144 (75%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDF 154
           YTEARMT++   +L+ +++D +DF
Sbjct: 123 YTEARMTKITLELLRDINKDTIDF 146


>gi|255535416|ref|YP_003095787.1| DNA topoisomerase IV subunit A [Flavobacteriaceae bacterium
           3519-10]
 gi|255341612|gb|ACU07725.1| Topoisomerase IV subunit A [Flavobacteriaceae bacterium 3519-10]
          Length = 868

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 160/719 (22%), Positives = 277/719 (38%), Gaps = 93/719 (12%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +       EE++K VS     ++ +L YA   I +RAIP + DGFKPV RRI+H+M E+ 
Sbjct: 2   MEEQENHHEESLKKVS--GLYKDWFLDYASYVILDRAIPSIFDGFKPVQRRIMHSMREL- 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGD 124
                 + K A +VG  + K HPHGD S+ D++V++ Q    +  LI  QGN+GNI  GD
Sbjct: 59  --EDGRYNKVANLVGNTM-KYHPHGDASITDAMVQIGQ----KELLIDMQGNWGNIYTGD 111

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RY EAR+T  A  ++   +     +  +Y+  ++EP+  P KFP LLA+G  GI 
Sbjct: 112 SAAAARYIEARLTPFALEVV--FNPKTTHWVKSYDGRNNEPIDLPVKFPLLLASGVEGIG 169

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VG++T I  HN  E+  A++A + N    +         PDF TGG++  S      +Y 
Sbjct: 170 VGLSTKIMPHNFNELINASIAHLKNKSFELY--------PDFLTGGMLDVS------NYN 215

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G  G R+R R  + +  + + CI  TE+P+      LI+ I +     +I + +   + 
Sbjct: 216 DGERGGRIRTRARIIQKEKNTLCI--TELPFGKNTGDLIDSIIKANEKGKIKIKKIEDNT 273

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +    +    N  + PD  +++++  +D E     N  V+  G  P+ + +  IL+  
Sbjct: 274 SDKVE--INIHLNSDVSPDKTIDALYAFTDCEIPISPNACVIV-GNRPEFLTVSEILRRN 330

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
             H   +L +     +  +  +     L+ + I      EI      E+    V      
Sbjct: 331 TDHTVSLLKKELEIELHELQEKWHFASLEKIFIENEIYQEIKGKSSKEEVYTAVDKGLKP 390

Query: 423 LTENQVDAILNLRLRSLR-----KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            T N + A+    +  L      ++  Y     ++NLLA + KI+ +             
Sbjct: 391 FTGNLLRAVTTDDIIKLTELPFMRISRYDQDKAIENLLALEAKIEQVKYHLDNLVAYAID 450

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
               +++ F K  +       F  +     A   +          + ++           
Sbjct: 451 YFTGIQKKFGKGKERKTELRIFDTIDATKVAVANEKFYANFEEGFIGTSL---------- 500

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
                         +        D I+    DG    +          + E + +    +
Sbjct: 501 -----------KKDQYLFDCSDIDDIITFQKDGTMKVVKVEPKTFIGKNIEHVAVWKKND 549

Query: 598 HNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANT-------RKGKTFL----KVS 645
                   +         +             + +  NT        KG   L      +
Sbjct: 550 KRTVYNMIYREGKEGPYYM--------KRFSVTGVTRNTDYKLASDSKGSEMLYFSANPN 601

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKG-------VRLQSYKDGG 696
            E ++  V+  +   +       K +     +I    R  KG       V+    K+ G
Sbjct: 602 GEAELVTVLLKSNARI----RKNK-IEIDFSEIGIKGRDSKGNLVTKYPVKKVDLKEEG 655


>gi|46019102|emb|CAE52015.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019122|emb|CAE52025.1| gyrase subunit A [Bacillus sonorensis]
          Length = 213

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 112/212 (52%), Positives = 158/212 (74%), Gaps = 1/212 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++ 
Sbjct: 1   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 60

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +
Sbjct: 61  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 120

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+  NP+I++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 121 GVLAVSKNPDITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEET 179

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             G   I++TEIPYQV K+RLIEKIA+L+  K
Sbjct: 180 SSGKPVIIITEIPYQVNKARLIEKIADLVRDK 211


>gi|192382652|gb|ACF04347.1| GyrA [Neisseria meningitidis]
          Length = 147

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 78/141 (55%), Positives = 108/141 (76%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           +A+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD 
Sbjct: 7   FAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDT 66

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V
Sbjct: 67  AVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETV 126

Query: 153 DFRDTYNEEDSEPVVFPSKFP 173
           +F   Y+  + EP+V P  FP
Sbjct: 127 NFGPNYDGSEHEPLVLPDPFP 147


>gi|208972171|gb|ACI32669.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 132

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 77/132 (58%), Positives = 105/132 (79%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNE 160
           ++ VDF D Y+ 
Sbjct: 121 KETVDFVDNYDG 132


>gi|46019104|emb|CAE52016.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019106|emb|CAE52017.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019114|emb|CAE52021.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019118|emb|CAE52023.1| gyrase subunit A [Bacillus licheniformis]
          Length = 213

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 112/212 (52%), Positives = 158/212 (74%), Gaps = 1/212 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++ 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+  NP+I++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 122 GVLAVSKNPDITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEET 180

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             G   I++TEIPYQV K+RLIEKIA+L+  K
Sbjct: 181 SSGKPVIIITEIPYQVNKARLIEKIADLVRDK 212


>gi|46019124|emb|CAE52026.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 212

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 119/212 (56%), Positives = 159/212 (75%), Gaps = 1/212 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A 
Sbjct: 1   VIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAM 60

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E
Sbjct: 61  EILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIE 120

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 121 GVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEET 179

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             G   I+VTE+PYQV K+RLIEKIA+L+  K
Sbjct: 180 SSGKERIIVTELPYQVNKARLIEKIADLVRDK 211


>gi|193735116|gb|ACF20067.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 89/156 (57%), Positives = 113/156 (72%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD S Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYA 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|37998968|dbj|BAD00054.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998976|dbj|BAD00058.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998978|dbj|BAD00059.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998980|dbj|BAD00060.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998998|dbj|BAD00069.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|62084058|dbj|BAD91436.1| DNA gyrase A subunit [Streptococcus agalactiae]
          Length = 140

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|37998994|dbj|BAD00067.1| DNA gyrase subunit A [Streptococcus equi subsp. equi]
 gi|37998996|dbj|BAD00068.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
          Length = 140

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLK 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGNEREP 140


>gi|330939644|gb|EGH42949.1| DNA gyrase subunit A [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 703

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 152/642 (23%), Positives = 269/642 (41%), Gaps = 104/642 (16%)

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR- 263
           ALIDNPE+++++L++YI GPDFPT   I+  R  I+E+YR GRG   +RAR  VE++ + 
Sbjct: 1   ALIDNPELTVDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYMRARSIVEDIDKV 59

Query: 264 -GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
            G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    R   P
Sbjct: 60  GGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELRRGEVP 119

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ +++  + +++ F +N+  L     P+++ L  +L+ ++ HRREV+ RR+ F ++ 
Sbjct: 120 EVILNNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRREVVTRRTVFELRK 178

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------------------- 416
              R  IL+G  +A  NID +IA+I+    P                             
Sbjct: 179 ARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERAGADSC 238

Query: 417 -----------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                         ++ L+  Q  AIL LRL  L  LE  ++  E   +L +  ++  +L
Sbjct: 239 RPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGELIRIL 298

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           NS  +    I  E+  ++  +  +     RRT   +   A        +I +E   V IS
Sbjct: 299 NSATRLMEVIREELELIRSEYGDA-----RRTEILD---ARLDLTLGDLITEEERVVTIS 350

Query: 526 NRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + G+         ++ +      SA   K+ D +   L A++   +L+ S+ GK Y L  
Sbjct: 351 HGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLKT 410

Query: 578 GNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----------------------- 612
             +        G  +  L+ L+  + I T    D                          
Sbjct: 411 YEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENSS 470

Query: 613 -------------------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
                               + + ++ G                G   L++   + +   
Sbjct: 471 ETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISA 530

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
               G+  + +  +  K+  F    +  M R  +GVR     +G     +     EG   
Sbjct: 531 AITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLISMLI-PEEGSQI 589

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 590 LTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 631



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++L  S +
Sbjct: 537 QEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMR-LPEGQKLISMLIPEEGSQILTASER 595

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L+   + 
Sbjct: 596 GYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVG 655

Query: 677 QIPEMSR-GKGVRLQSYKDGG 696
           ++  + R  +GV L       
Sbjct: 656 EVSSLGRNTQGVTLIKLASDE 676


>gi|172073092|gb|ACB71403.1| GyrA [Escherichia coli]
          Length = 152

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/152 (57%), Positives = 119/152 (78%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY
Sbjct: 1   LKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRY 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P
Sbjct: 61  MLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           +K PNLL NG+SGIAVGMAT+IP HN+ E+  
Sbjct: 121 TKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 152


>gi|193735124|gb|ACF20071.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735134|gb|ACF20076.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/156 (57%), Positives = 114/156 (73%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD S Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDNSAYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|193735112|gb|ACF20065.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/156 (56%), Positives = 113/156 (72%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD   Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSPAYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|327179194|gb|AEA30140.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 150

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/147 (59%), Positives = 116/147 (78%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  
Sbjct: 4   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSL 63

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V
Sbjct: 64  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 123

Query: 168 FPSKFPNLLANGTSGIAVGMATSIPSH 194
            P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 124 MPTKIPNLLVNGSSGIAVGMATNIPPH 150


>gi|172073094|gb|ACB71404.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 149

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 117/148 (79%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           Y L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V 
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVM 120

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNV 196
           P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 PTKIPNLLVNGSSGIAVGMATNIPPHNL 148


>gi|190888732|gb|ACE95991.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 143

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 76/143 (53%), Positives = 106/143 (74%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVV 167
           + +D+D VDF D Y+  + EPVV
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVV 143


>gi|116876157|gb|ABK30938.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876159|gb|ABK30939.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876163|gb|ABK30941.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735118|gb|ACF20068.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/156 (56%), Positives = 114/156 (73%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHG+ S Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGNSSAYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|219815935|gb|ACL37054.1| GyrA [Salmonella enterica]
          Length = 136

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 77/136 (56%), Positives = 106/136 (77%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+
Sbjct: 1   IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A 
Sbjct: 61  VIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 120

Query: 142 LILQGVDEDAVDFRDT 157
            ++  ++++ VDF D 
Sbjct: 121 ELMADLEKETVDFVDN 136


>gi|108937160|gb|ABG23392.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735130|gb|ACF20074.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/156 (57%), Positives = 115/156 (73%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD+S Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDRSAYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|33338048|gb|AAQ13646.1|AF173979_1 DNA gyrase [Pasteurella multocida]
          Length = 141

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/141 (60%), Positives = 108/141 (76%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR++ AM E G  +   ++KSARIVG+VIGK HPHGD +VYD+LVR+AQPF  
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGD+AAA RYTEARMT++A  +L  +D++ V+F   Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 168 FPSKFPNLLANGTSGIAVGMA 188
            P+K P LL NG+SGIAVGMA
Sbjct: 121 LPTKVPALLVNGSSGIAVGMA 141


>gi|172073090|gb|ACB71402.1| GyrA [Escherichia coli]
          Length = 149

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 118/148 (79%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           Y L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V 
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPGVM 120

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNV 196
           P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 PTKIPNLLVNGSSGIAVGMATNIPPHNL 148


>gi|256422125|ref|YP_003122778.1| DNA topoisomerase IV subunit A [Chitinophaga pinensis DSM 2588]
 gi|256037033|gb|ACU60577.1| DNA topoisomerase (ATP-hydrolyzing) [Chitinophaga pinensis DSM
           2588]
          Length = 846

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 143/602 (23%), Positives = 254/602 (42%), Gaps = 44/602 (7%)

Query: 8   NSNTLVEENVKAV-SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++    +E+++ +  L    E  +L YA   I ERA+P + DG KPV RRI+HAM EM  
Sbjct: 5   DNTQPADESLQNILHLGDMYENWFLDYASYVILERAVPSVEDGLKPVQRRILHAMKEM-- 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDS 125
                F K A ++G  + + HPHGD S+ D++V L Q    +  LI  QGN+G+   GD 
Sbjct: 63  -DDGRFNKVANVIGSTM-QFHPHGDASIGDAIVNLGQ----KDLLIDTQGNWGDVRTGDD 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RY EAR+++ A  +  G +     ++ +Y+   +EP+  P KFP LLA G  GIAV
Sbjct: 117 AAAARYIEARLSKFALEV--GFNSKTTQWQLSYDGRKNEPLALPMKFPLLLAQGAEGIAV 174

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G++T I  HN  E+ EA++  +   +  I         PDFPTGG+I         +Y  
Sbjct: 175 GLSTKILPHNFIELLEASIKYLKGKKFEIF--------PDFPTGGMIDV------ANYND 220

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GR G +VR R  +EE  +    +++ ++PY V  + L+E I +         ++ + D +
Sbjct: 221 GRRGGKVRVRAHIEE--KDKKTLLIKDVPYGVTTTALMESIVKA-NDNGKIKIKKVVDNT 277

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           A+DV I        + PD+ +++++  +D E     N  V+   + P+ + +  +L+   
Sbjct: 278 AKDVEIE-VQLAPGISPDITIDALYAFTDCEISISPNACVIIDDK-PRFLTVSELLRSSA 335

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
              + +L R    R+  +  +        I +     I   +  + K             
Sbjct: 336 DFTQALLKRELEIRLSELQDKWHYTSLEKIFF--EKGIYKELEQKHKDWE---------- 383

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
             V A ++      +K  + +I  E    L EK           +   QI     ++K++
Sbjct: 384 -AVIAAIDKGFAPYKKNLKREITREDILKLTEKPVRRIYRLDINELNEQIKSIEADIKDV 442

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
                ++      + E         ++ + E +    +   +  I + K +   +     
Sbjct: 443 KHDLANMVDFTVAYYENLLKKYGKGRERITEIKTFDTIQVQQVAIANAKIYVNRVDGFIG 502

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
                 +        D I++   DGK       + +        + +    +        
Sbjct: 503 TSLKKDEFVADCSDLDNIIVFKKDGKMIITKVADKVFVGKDIIHVDVFRKNDERTTYNMI 562

Query: 606 FV 607
           +V
Sbjct: 563 YV 564


>gi|311350421|gb|ADP92408.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350427|gb|ADP92411.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350433|gb|ADP92414.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350435|gb|ADP92415.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350437|gb|ADP92416.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350439|gb|ADP92417.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350442|gb|ADP92418.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350449|gb|ADP92421.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350451|gb|ADP92422.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350455|gb|ADP92424.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 115/144 (79%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIA 184
            +  P V P+K PNLL NG+SGIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|193735128|gb|ACF20073.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/156 (56%), Positives = 112/156 (71%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD   Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSPAYQ 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|37998986|dbj|BAD00063.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|37998988|dbj|BAD00064.1| DNA gyrase subunit A [Streptococcus canis]
          Length = 140

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|33338052|gb|AAQ13648.1|AF173981_1 DNA gyrase [Pasteurella multocida]
          Length = 143

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 109/143 (76%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR++ AM E G  +   ++KSARIVG+VIGK HPHGD +VYD+LVR+AQPF  
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDIAVYDTLVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGD+AAA RYTEARMT++A  +L  +D++ V+F   Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 168 FPSKFPNLLANGTSGIAVGMATS 190
            P+K P LL NG+SGIAVGMAT 
Sbjct: 121 LPTKVPALLVNGSSGIAVGMATK 143


>gi|161511951|emb|CAP45395.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 164

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/147 (58%), Positives = 116/147 (78%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 8   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 67

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P
Sbjct: 68  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 127

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIP 192
            V P+K PNLL NG+SGIAVGMAT+  
Sbjct: 128 DVMPTKIPNLLVNGSSGIAVGMATNFL 154


>gi|46019108|emb|CAE52018.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 212

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 119/212 (56%), Positives = 159/212 (75%), Gaps = 1/212 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A 
Sbjct: 1   VIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAM 60

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E
Sbjct: 61  EILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIE 120

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 121 GVLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEET 179

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             G   I+VTE+PYQV K+RLIEKIA+L+  K
Sbjct: 180 SSGKERIIVTELPYQVNKARLIEKIADLVRDK 211


>gi|300772555|ref|ZP_07082425.1| DNA topoisomerase 4 subunit A [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760858|gb|EFK57684.1| DNA topoisomerase 4 subunit A [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 907

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 156/773 (20%), Positives = 293/773 (37%), Gaps = 115/773 (14%)

Query: 6   ISNSNTLVEENVKA------------VSLRFALEERYLAYALSTIKERAIPDLRDGFKPV 53
           +S+      +N +             + +    E  +L YA   I +RA+P + DGFKPV
Sbjct: 1   MSDETNYNNDNPEELTPQENEQTSNTIPITGLYENWFLDYASYVILDRAVPHINDGFKPV 60

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
            RRI+H++ EM       + K A ++G  + K HPHGD S+ D++V+L Q    +  LI 
Sbjct: 61  QRRILHSLKEM---DDGRYNKVANVIGNTM-KYHPHGDASIGDAMVQLGQ----KNLLID 112

Query: 114 GQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            QGN+G+   GDSAAA RY E R+++ A  +    + +  +++ +Y+  + EPV  P KF
Sbjct: 113 CQGNWGDPTTGDSAAAPRYIEGRLSKFALEV--TFNPETTEWQLSYDGRNKEPVTLPVKF 170

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
           P LLA G  GIAVG+AT I  HN  E+ + ++ +++    +I         PDF TGG+ 
Sbjct: 171 PLLLAQGAEGIAVGLATKIMPHNFNELIDGSIQVLNGERPNIL--------PDFLTGGMA 222

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
             S      +Y  G+ G ++R R  +EE  + +  I  TEIP+      LIE +      
Sbjct: 223 DCS------AYNEGQRGGKIRVRAKIEERDKKTLAI--TEIPFGTTTGGLIESVV-AAND 273

Query: 293 KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           K    ++ I D +AE+V I+       + PD+ +++++  +  E         +     P
Sbjct: 274 KGKIKIKKIEDNTAENVEII-VHLAPGISPDVTIDALYAFTACEVSISP-NTCVIKNDRP 331

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
             M ++ +L E   + + +L +    ++  +  ++     L I             N   
Sbjct: 332 HFMSVNDVLIENTKNTKNLLKQELEIKLHDLHEKIFFSTLLKIFIQEGMYKHPDYENSGD 391

Query: 413 PKPVMVS------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
              V+                 +       +++  + S+ + +  +   ++  L  E   
Sbjct: 392 FDTVVQVLNELFTPFFELFYRPIEPEDYKRLIDKPMSSITRFDVKKADEQMAALEEEI-- 449

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
             ++  + +Q           +++ + K  +       F +V     A     +      
Sbjct: 450 -KTVKRNLRQLTEYAIAWFERLRDKYGKGRERRTELRAFDKVEATQVALANAKLYVNREE 508

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
             + +                          +        D I++   DGK       + 
Sbjct: 509 GFIGT---------------------GMKKDEFVSDCSDIDDIIVFRGDGKYVVTKIQDK 547

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV--------EESEII 632
           +        +   +    ++  +   VY         +                +E ++ 
Sbjct: 548 VFVGKDIIHV--AVFKKGDERTIYNAVYKEGG-----TGTSYVKRFAVVGVTRDKEYDVS 600

Query: 633 ANTRKGKTF---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRG-KG 686
             ++  K        + E ++  V            + RK L F +D  +I    R  +G
Sbjct: 601 KGSKGSKILYFTANPNGEAEVINVQLKPH------SKLRK-LTFDLDLAEIAIKGRASQG 653

Query: 687 -------VRLQSYKDGGISDVICFKI--CEGLTWIDSAGRSYNRSENDLLGWL 730
                  V+  ++K  G+S +   KI   E L  ++   R     E D    +
Sbjct: 654 NIVSKYPVKKITFKSAGVSTLAGRKIWYDEILKRLNVDERGKYLGEFDGDDKI 706


>gi|149199674|ref|ZP_01876706.1| DNA topoisomerase IV subunit A [Lentisphaera araneosa HTCC2155]
 gi|149137191|gb|EDM25612.1| DNA topoisomerase IV subunit A [Lentisphaera araneosa HTCC2155]
          Length = 808

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 139/665 (20%), Positives = 254/665 (38%), Gaps = 62/665 (9%)

Query: 1   MGVDNISNSNTLVEENVKAVS-----------LRFALEERYLAYALSTIKERAIPDLRDG 49
           M  D+ ++      E    ++           L   +   ++ YA   IK+RAIPD+ DG
Sbjct: 1   MDTDDTADIIKPNPEQYDPLAAKIGFSPFATHLNRMMTGNFIDYASYVIKDRAIPDVDDG 60

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI+H + +        F K A IVG  +   HPHGD S+Y +LV +A     + 
Sbjct: 61  LKPVQRRILHTLFK---ADDGKFHKVANIVGACMA-YHPHGDSSIYGALVTVA----NKE 112

Query: 110 PLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
             I  QGNFGNI  GD+A+A RY E R++ +A   L   + +  +F D+Y+  + EPV  
Sbjct: 113 YFIEKQGNFGNILTGDNASAARYIECRLSPLARETL--FNTETTEFVDSYDGRNKEPVCL 170

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPT 228
           P+K P LL  GT GIAVGMAT I  HN  E+ +A + ++      I         PDF  
Sbjct: 171 PAKVPALLMMGTEGIAVGMATRILPHNFNELLKAQIKILRGQRFEIY--------PDFLC 222

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           GGI+  S+      Y  GRG   VRA+  +         +V+ ++        L+  I E
Sbjct: 223 GGIMDISQ------YDFGRGKVTVRAKIDILNNKT----LVIKQVAPGTTTESLMSSIEE 272

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
                +I +   I+D +AE V I      R +  D  + +++  +  E         +  
Sbjct: 273 AAKNGKIKIAS-IQDYTAEHVEIE-INLPRGVQADWALNALYAFTQCEVSLSP-NITVIQ 329

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE--ILKGLLIAYLNIDEIIAI 406
              P+ + +  +L         +L          ++ +     L+ + I      +I   
Sbjct: 330 RGRPKEIHVGEVLHHNTQTLVNILRWELLNEQNKLNEKYHDRTLERIFIEERIYKKIEEC 389

Query: 407 IRNEDKPKPVM--------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
               +  + V           R  +++  ++ +L + +R +   +  +   EL+ +L   
Sbjct: 390 TSQSEVFEAVRSGLKPFLDQLRRDVSDEDIERLLRIPIRRISLFDINKNNKELEEILKAL 449

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +++     + +   +     I+ +   + K         +  +V   + A     +   +
Sbjct: 450 KEVAY---NLEHLKDYTINFIKNLISKYGKQYPRLTEIKSIEKVDAKEIAVANVKLGYDK 506

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
               + +       +K    D   +     D      +      +   +           
Sbjct: 507 VGGYIGTQINNGNHIKCTEFDRIII--LTKDGKFKVTNISDKLFVGRFTEIFVVDKEQIY 564

Query: 579 N-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL-LVVSSKGNAFIVEESEIIANTR 636
           + + + +  G +      +          ++    KL L+ ++ G        +   +  
Sbjct: 565 SVIYTDKKSGISYHKRCMIKKFILDKEYLLFPKGNKLELIDTNYGIVLDCHLED--TSRS 622

Query: 637 KGKTF 641
           KG T 
Sbjct: 623 KGVTA 627


>gi|311350423|gb|ADP92409.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350425|gb|ADP92410.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350431|gb|ADP92413.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350447|gb|ADP92420.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 115/144 (79%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIA 184
            +  P V P+K PNLL NG+SGIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|99035108|ref|ZP_01314894.1| hypothetical protein Wendoof_01000268 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 146

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/146 (56%), Positives = 111/146 (76%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  +S+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +
Sbjct: 1   MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PL+ GQGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTY 158
           EAR+ +V+  +L  +DE+ V +  TY
Sbjct: 121 EARLQKVSHFLLNDIDENTVRYLATY 146


>gi|37998970|dbj|BAD00055.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998972|dbj|BAD00056.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998974|dbj|BAD00057.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 140

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDLSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|116048067|gb|ABJ53249.1| GyrA [Pseudomonas andersonii]
          Length = 139

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/139 (59%), Positives = 109/139 (78%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPVHRR++ AMSE+G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY
Sbjct: 1   LKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            L+ GQGNFG++DGD+AAA RYTE RMT++A  +L  +D++ VD+   Y+  +  P V P
Sbjct: 61  LLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVMP 120

Query: 170 SKFPNLLANGTSGIAVGMA 188
           +K PNLL NG+SGIAVGMA
Sbjct: 121 TKVPNLLINGSSGIAVGMA 139


>gi|225164319|ref|ZP_03726587.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
 gi|224801081|gb|EEG19409.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
          Length = 732

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 146/701 (20%), Positives = 271/701 (38%), Gaps = 90/701 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
              L  A +  +L YA   I +RA+P + DG KPV RRI+H + E        F K A I
Sbjct: 77  NAPLAHAYKNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTLWE---KDDGRFHKVANI 133

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMT 137
           VG  +   HPHGD S+  +LV +AQ    R  LI  QGNFGN + GD AAA RY EAR+T
Sbjct: 134 VGATMA-YHPHGDASIGAALVAIAQ----RGWLIEPQGNFGNALTGDDAAAPRYIEARLT 188

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             A  +L   +     ++ +Y+    EPV  P+KFP  L  G  GIAVG+AT I  HN  
Sbjct: 189 PFAREVL--FNPKTTPWQLSYDGRAKEPVTLPAKFPVSLLEGADGIAVGLATKILPHNFN 246

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           ++C AA+  ++  +  I         PDF +GGI         +  R G+   ++RA+  
Sbjct: 247 DLCRAAINHLNGKKFRIV--------PDFASGGIADF--SEYNDGERGGK--IKIRAKIE 294

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +       + + +TE+PY      LIE I       +I  +  + D +A+ V I+     
Sbjct: 295 IR----SKYLLAITELPYGATTVSLIESIVSANNKGKIK-IRHVDDNTADQVEIL-VHLP 348

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLS--------------MGRVPQVMPLDGILKE 363
           +  D + ++  +++ +D +        V+                   P    +  IL+ 
Sbjct: 349 QGSDAEQVINQLYVFTDCQISISPAACVIEQVPARTGDDGREIPAQDRPIFTGVSEILRR 408

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
            +    ++L +    ++  ++++        I     + I   I N    + V+      
Sbjct: 409 SVDKTVQLLKQELEIKLGELEQQWHWDSLERIFI--EERIYRRIENSKTWENVLQEIRDG 466

Query: 423 -----------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                      +TE+ +  +  +R++ +     ++    +  + A+      + +     
Sbjct: 467 LKPFVKKLRREITEDDITRLTEIRIKRISAYNRFKADEAIKGIEADI---KQVKHDLAHI 523

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
                     ++E + K     +RRTT+ E            + +     VV +N+    
Sbjct: 524 IPYTIAWFERLQEKYGK---GRKRRTTYDE------------IEQISAAQVVAANQRLYV 568

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           +     V L           +        D +L +  DG        + +        + 
Sbjct: 569 NRDEGFVGL------NWRQHEFVTECTILDDVLCIMADGTMKVAKVADKVFMGRDIIHVA 622

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKM 650
            ++  + ++   +    D               +  E        +G   + +  ++++ 
Sbjct: 623 -ILPKDGDKKFYSLIYQDKESGKAFAKRFQIGGVTREKLYPLTASEGSKVVFLDVADDEA 681

Query: 651 KLVVKVTGDHVAVVGE-NRKLLIFSID--QIPEMSR-GKGV 687
            +  +V    + + G  + ++  F  +  ++   SR  KG+
Sbjct: 682 SMPGRV---EIILSGRCSARVKEFPFNFGELKVGSRSAKGI 719


>gi|46019120|emb|CAE52024.1| gyrase subunit A [Bacillus licheniformis]
          Length = 212

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 111/212 (52%), Positives = 157/212 (74%), Gaps = 1/212 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++ 
Sbjct: 1   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 60

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +
Sbjct: 61  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 120

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+  NP+I++ +L+E I GPDFPT G ++  R  I ++Y  GRG   + A+  +EE 
Sbjct: 121 GVLAVSKNPDITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLPAKAQIEET 179

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             G   I++TEIPYQV K+RLIEKIA+L+  K
Sbjct: 180 SSGKPVIIITEIPYQVNKARLIEKIADLVRDK 211


>gi|193735132|gb|ACF20075.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 88/156 (56%), Positives = 113/156 (72%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPH D S Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHCDSSAYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|313159342|gb|EFR58706.1| DNA gyrase/topoisomerase IV, A subunit [Alistipes sp. HGB5]
          Length = 1048

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 144/568 (25%), Positives = 234/568 (41%), Gaps = 48/568 (8%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+HAM    +     + K A IVG+
Sbjct: 56  LTGMYKNWFLDYASYVILERAVPHVEDGLKPVQRRILHAM---KVVDDGRYNKVANIVGQ 112

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 113 TM-QYHPHGDASIKDALVQLGQ----KDLLIDCQGNWGNILTGDEAAAGRYIEARLSKFA 167

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   ++   ++  TY+    EPV  P KFP LLA G+ GIAVG+A+ I  HN  E+ 
Sbjct: 168 NEVV--FNKKTTEWMLTYDGRKEEPVTLPIKFPLLLAQGSDGIAVGLASKILPHNFVELI 225

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            A +A +   E  +         PDFPTGG+   SR      Y  G  G  V+ R  + +
Sbjct: 226 NACIAHLQGREFQLY--------PDFPTGGMADVSR------YNDGLRGGAVKVRAKISK 271

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           + + +  I  TEIPY       I+        K    ++ + D +A+ V IV    +   
Sbjct: 272 IDKRTLAI--TEIPYTTTTES-IKDSIIKANDKGKIKIKKVDDNTADRVEIV-IQVSPDE 327

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E         L     P  + +  IL+    H + +L R    R+
Sbjct: 328 SSDKTIDALYAFTDCEVSIAP-NACLIWEDKPHFLGVSEILRRSAEHTKWLLGRELEIRL 386

Query: 381 QAIDRRVE--ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             ++       L+ + I       I      E+    V        +     +    ++ 
Sbjct: 387 GELNEAWHAASLERIFIENKLYQLIEGSKSREEAYAAVDKGLEPFKKLLRREVTLSDVQR 446

Query: 439 LRKLEEYQI-KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
           L +L+  +I + + D    E  +I+  + S +   N +        E        GR R 
Sbjct: 447 LTELKFIRISRYDSDKADNEIRQIEEDIKSTQYDLNHLTEYAVAYYERIRDKYGKGRERR 506

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           T            +   IE   + V  +     R+     +             ++    
Sbjct: 507 TEL---------REFDNIEATKVAVTNAKLYVDRAEGFFGIGK------SMKDAELVCDC 551

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRG 585
              D +++ + DG+       +      
Sbjct: 552 SDIDDVIVFTKDGRYVITKVSDKAFFEK 579


>gi|239737043|gb|ACS13101.1| ParC [Pseudomonas putida]
          Length = 142

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 82/142 (57%), Positives = 110/142 (77%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AMSE+G D    +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMSELGNDCNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           Y L+ GQGNFG++DGD+AAA RYTE RM ++A  +L  + ++ VD+   Y+  +  P V 
Sbjct: 61  YLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVM 120

Query: 169 PSKFPNLLANGTSGIAVGMATS 190
           P++ PNLL NG+SGIAVGMAT+
Sbjct: 121 PTRIPNLLVNGSSGIAVGMATN 142


>gi|77166864|gb|ABA62408.1| DNA gyrase subunit A [Simkania negevensis]
          Length = 152

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 73/152 (48%), Positives = 104/152 (68%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
               ++E YL Y++S I  RA+PD+RDG KP  RR++ AM ++ L  GA  +K A+I G+
Sbjct: 1   FEDEMKESYLRYSMSVIISRALPDVRDGLKPSQRRVLFAMRQLNLSPGAKHRKCAKICGD 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
             G  HPHG+  +Y +LVR+AQ +V  Y L+ GQGNFG+IDGD  AA RYTEAR+T+ + 
Sbjct: 61  TSGDYHPHGETVIYPTLVRMAQDWVMGYCLVQGQGNFGSIDGDPPAAMRYTEARLTRASM 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            +++ +D++ V++   YNE   EP VFPSKFP
Sbjct: 121 ALMEDLDKETVEYVPNYNETKQEPTVFPSKFP 152


>gi|295134566|ref|YP_003585242.1| DNA topoisomerase IV subunit A [Zunongwangia profunda SM-A87]
 gi|294982581|gb|ADF53046.1| DNA topoisomerase IV subunit A [Zunongwangia profunda SM-A87]
          Length = 873

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 162/739 (21%), Positives = 289/739 (39%), Gaps = 121/739 (16%)

Query: 6   ISNSNTLVEENVKAVSLRFAL------EERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           +  +    ++          +      ++ +L YA   I ERA+P + DGFKPV RRI+H
Sbjct: 1   MEENPEESKDEQLNKPKEELMRVTGMYKDWFLDYASYVILERAVPAMEDGFKPVQRRIMH 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M ++       + K A IVG  + + HPHGD S+ D++V++ Q    +  LI  QGN+G
Sbjct: 61  SMKDL---DDGRYNKVANIVGHTM-QYHPHGDASIGDAMVQIGQ----KDLLIDTQGNWG 112

Query: 120 NI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           NI  GD AAA RY EAR+++ A  +L   +    +++ +Y+    EPV  P KFP LLA 
Sbjct: 113 NILTGDRAAAPRYIEARLSKFALEVLY--NPKLTEWQLSYDGRKKEPVNLPVKFPMLLAQ 170

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GIAVG++T +  HN  E+ +A++  +      +         PDFPTGGI   S   
Sbjct: 171 GGEGIAVGLSTRLLPHNFNELIDASIKHLQGKRFKLF--------PDFPTGGIADISH-- 220

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
               Y  G+ G RVR R  + ++ + +  +V+TEIP+    + LI+ + +    K    +
Sbjct: 221 ----YNDGKRGGRVRVRAKISQLDKNT--LVITEIPFGTTTTSLIDSVLKA-NEKGKIKI 273

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           + I D +A +V I       ++ PD  +++++  +  E        V+   + P+ + + 
Sbjct: 274 KKIEDNTAAEVEIQ-IHLPNNISPDRTIDALYAFTQCENSLSPLGCVIVDNK-PEFLGVS 331

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKP--- 413
            IL+    H   +L R     +  ++ +     L+ + I      EI      E      
Sbjct: 332 DILRSSTDHTLHLLKRELEITLDELEEQWHFASLERIFIENRIYREIEEEETWEGVISAI 391

Query: 414 -----KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                  +   + ++TE  +  +  +R++ + K +  + + ++D L  E  +I   L   
Sbjct: 392 DEGLKPHITHLKRAVTEEDIVRLTEIRIKRISKFDIDKAQQKIDALEDEIARIKHHL--- 448

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
               +       ++KE + +  D       F ++  +        +        + +   
Sbjct: 449 DHLIDYAIDYFTKLKEKYGQDKDRKTELRLFEDIEASKVVIRNTKLYVNRKEGFIGTALK 508

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
                                           D I+  + DGK                 
Sbjct: 509 RDE---------------------YVTDCSDIDDIICFTADGKMMVTKVDTKTFIGK--- 544

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKG-----NAFIVEESEIIANT----R 636
                       DI+   V+    K     ++   G            + +  +      
Sbjct: 545 ------------DIIHVAVFKKKDKRTIYNMIYRDGKGGTTYVKRFAVTSVTRDREYDLT 592

Query: 637 KGKTFLKV-------SSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRG-KG 686
           +GK   KV       + E ++  V          VG  +K L F +D  +I    R  KG
Sbjct: 593 QGKKDSKVLYFSANPNGEAEVITVFLRQ------VGSIKK-LKFELDFSEILIKGRNVKG 645

Query: 687 -------VRLQSYKDGGIS 698
                  V+    K+ G+S
Sbjct: 646 NIVTKYSVKRIELKEEGVS 664


>gi|120435835|ref|YP_861521.1| DNA topoisomerase IV subunit A [Gramella forsetii KT0803]
 gi|117577985|emb|CAL66454.1| topoisomerase IV subunit A [Gramella forsetii KT0803]
          Length = 880

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 157/731 (21%), Positives = 289/731 (39%), Gaps = 101/731 (13%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +     +   E   + + +    ++ +L YA   I ERA+P + DGFKPV RRI+H+
Sbjct: 1   MEENQEGAQDEQFESKEELIKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++       + K A IVG  + + HPHGD S+ D++V++ Q    +  LI  QGN+GN
Sbjct: 61  MKDL---DDGRYNKVANIVGHTM-QYHPHGDASIGDAMVQIGQ----KDILIDTQGNWGN 112

Query: 121 I-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           I  GD AAA RY EAR+++ A  +L        +++ +Y+    EPV  P KFP LLA G
Sbjct: 113 ILTGDRAAAPRYIEARLSKFALEVLY--SPKLTEWQLSYDGRKQEPVNLPVKFPMLLAQG 170

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVG++T    HN  E+ +A++  +      I         PDFPTGGI   S    
Sbjct: 171 AEGIAVGLSTRFLPHNFNELIDASILHLKGKTFKIF--------PDFPTGGIADVS---- 218

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y  G+ G RVR R  + ++ + +  +V+ EIPY    S LI+ I +    K    ++
Sbjct: 219 --NYSDGKRGGRVRIRAKINQLDKNT--LVINEIPYGTNTSSLIDSILKA-NDKGKIKIK 273

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D +A +V I+      ++ PD  +++++  +  E        V+   + P  + +  
Sbjct: 274 KIEDNTAAEVEIL-IHLPNNMSPDRTIDALYAFTQCENSLAPLGCVIIDHK-PIFLGVSE 331

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIR--------N 409
           +L+    H   +L R    ++  ++ +     L+ + I      +I             +
Sbjct: 332 VLRRSTDHTLHLLKRELEIKLDELEEQWHFASLERIFIENRIYRDIEEEETWQGVIQAID 391

Query: 410 EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
           +         + ++TE  +  +  +R++ + K +  + + ++D L A+  ++   L++  
Sbjct: 392 KGLKPHTKHLKRAVTEEDIVRLTEIRIKRISKFDIDKAQQKIDALEADIAQVKHHLDN-- 449

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
              +      +++K+ +    +       F ++           +        V ++   
Sbjct: 450 -LIDFAIDYFKKLKKDYGTGKERKTELRLFEDIEATKVVIRNTKLYVNRAEGFVGTSLKK 508

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                                          D ++  + DGK                  
Sbjct: 509 DE---------------------YVTECSDIDDVICFTADGKMMVTKVDTKTFIGKDIIH 547

Query: 590 IQLLIDLNHNQDIVTAF----VYDSTCKLLVVS--------SKGNAFIVEESEIIANTRK 637
           + +    +        +      ++  K   V+        S G      +    +    
Sbjct: 548 VAIFKKKDKRTIYNMVYRDGKAGNTYVKRFSVTSVTRDREYSLGQGKKDSKVLYFSANPN 607

Query: 638 GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKG-------V 687
           G        E ++  V+         VG  RK + F +D   I    R  KG       V
Sbjct: 608 G--------EAEVITVLLRQ------VGSIRK-VKFDLDFADILIKGRKVKGNIVSKYSV 652

Query: 688 RLQSYKDGGIS 698
           +    K+ G+S
Sbjct: 653 KRIEMKEEGVS 663


>gi|86143381|ref|ZP_01061783.1| DNA topoisomerase IV subunit A [Leeuwenhoekiella blandensis MED217]
 gi|85830286|gb|EAQ48746.1| DNA topoisomerase IV subunit A [Leeuwenhoekiella blandensis MED217]
          Length = 875

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 162/756 (21%), Positives = 297/756 (39%), Gaps = 106/756 (14%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFAL---EERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  +    +    E+     ++       ++ +L YA   I ERA+P + DGFKPV RRI
Sbjct: 1   MSENYEDPNLDQPEDENSGETITRVTGMFKDWFLDYASYVILERAVPAIEDGFKPVQRRI 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +H+M ++       + K A IVG  + + HPHGD S+ D++V++ Q    +  LI  QGN
Sbjct: 61  MHSMKDL---DDGRYNKVANIVGHTM-QYHPHGDASIADAMVQMGQ----KDLLIDTQGN 112

Query: 118 FGN-IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           +GN + GDSAAA RY EAR+++ A  +L        D++ +Y+    EP+  P KFP LL
Sbjct: 113 WGNTLTGDSAAASRYIEARLSKFALEVL--FSPKITDWQASYDGRRKEPINLPVKFPLLL 170

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
           A G  GIAVG++T +  HN  E+ +A++  ++  +  I         PDFP+ G    S 
Sbjct: 171 AQGAEGIAVGLSTKVLPHNFVELIDASVKHLEGKKFKIL--------PDFPSAGEADFSD 222

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
                 Y+ G+ G R+R R  + ++ + +  +V+TEIP+    + LI+ I +    K   
Sbjct: 223 ------YKDGKRGGRIRVRAKISQLDKNT--LVITEIPFTTTTTSLIDNILKA-NDKGKL 273

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            ++ I D ++  V I+       L PD  + +++  ++ E        V+   + P  + 
Sbjct: 274 KIKRIEDNTSSQVEIL-VHLPAGLSPDKTIGALYAFTNCEVSISPLGCVIEDNK-PLFVG 331

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPK 414
           +  +L+      +++L +    +++ ++ +     L+ + I      +I      +    
Sbjct: 332 VSEMLRISTDRTKDLLRQELEIQLEELENQWHYASLERIFIENRIYRDIEEETTWDGVLH 391

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG-KQQWN 473
            +         +    ++   L  L ++   +I     +   ++ +      +  K    
Sbjct: 392 AINEGLKPHIGHLKRPVVEEDLVRLTEIRIKRISKFDIDKAQQRIEALEDQIAEVKHHLE 451

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            +        +   K    GR R T             +   + E   VVI N     + 
Sbjct: 452 HLTDYAIAYFKRLKKEFGAGRERKTEI-----------KLFDDIEASKVVIRNTKLYVNR 500

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K   V  S    +              D I++ + +G                       
Sbjct: 501 KEGFVGTSLKKDEYVTD------CADIDDIIVFTKEGVMMVTKVDTKTF----------- 543

Query: 594 IDLNHNQDIVTAFVYDSTCK---LLVVSSKG-----NAFIVEESEIIANT-------RKG 638
                 +DI+   V+    K     ++   G            + +  +        +KG
Sbjct: 544 ----VGKDIIHVAVFKKKDKRTIYNMLYRDGKGGATYVKRFNVTSVTRDREYDMTKGKKG 599

Query: 639 KTFL----KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRGK-G----- 686
              L      + E ++  V      ++  VG  +K L F +D   I    R   G     
Sbjct: 600 SQVLYFSANPNGEAEVVSV------YLRAVGNIKK-LKFDLDFSDILIKGRNANGNLATK 652

Query: 687 --VRLQSYKDGGISDVICFKI--CEGLTWIDSAGRS 718
             VR    K+ G+S +   KI   + +  ++  GR 
Sbjct: 653 HSVRTIELKEKGVSTLKPRKIWFDDTVQRLNVDGRG 688


>gi|325279767|ref|YP_004252309.1| DNA topoisomerase (ATP-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
 gi|324311576|gb|ADY32129.1| DNA topoisomerase (ATP-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
          Length = 931

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 141/620 (22%), Positives = 251/620 (40%), Gaps = 49/620 (7%)

Query: 16  NVKAVSLRFAL-EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            ++++     + ++ +L YA   I ERA+P + DG KPV RRI+H+M E+       + K
Sbjct: 72  KIRSIQHLDGMYQKWFLDYASYVILERAVPYVNDGLKPVQRRILHSMREL---DDGRYNK 128

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTE 133
            A I+G  + K HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY E
Sbjct: 129 VANIIGNTM-KYHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIE 183

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ A  ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+A+ I  
Sbjct: 184 ARLSKFALEVV--FNPKTTNWKPSYDGRNREPITLPIKFPLLLAQGVEGIAVGLASKILP 241

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+ +A +A + + +        +++ PDFPTGG+I  S+      Y  G  G  V+
Sbjct: 242 HNFNELIDACIAHLKHED--------FVLYPDFPTGGMIDVSK------YCDGMRGGNVK 287

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  + E    +  + +TEIP+    S LI+ I +    K    ++ I D +A DV I+ 
Sbjct: 288 IRAKI-EKDNNNRALKITEIPFGRTTSSLIDSIIKA-NEKGKIKIKKIDDNTARDVEIL- 344

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                 +  D  +++++  +D E       + +     P+ MP+  IL++       +L 
Sbjct: 345 IQLAPGVSSDKTIDALYAFTDCELSISP-NSCVIEEEKPRFMPISDILRQSADDTVALLK 403

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
                R++ +   +  +    I               +  + V+                
Sbjct: 404 LELEIRLKELLEDLHYVSLERIFIEERIYKDKQFEESETMELVIAHVH------------ 451

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RL+        ++  +    L E +    L  S ++  + I     E+  +      + 
Sbjct: 452 RRLQPFLPELYREVTDDDVKKLLEIKMKRILKFSSEEADHYIRSLNEEIAVVKHNIEHII 511

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
                + E  +A     ++   E      + + +  I + K +               + 
Sbjct: 512 PYSIAYYERIKAKYGKGRERKTEIRNFENIEAAKVVIANEKLYINREEGFIGTALKKDEF 571

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  D +++   DG  Y     +     G       +   N  + I    VY     
Sbjct: 572 ICECSDMDDVIVFKKDGTYYVTKVAD-KIFVGKDVQYVNVFKKNDKRTIYNV-VYRDGKY 629

Query: 614 LLVVSSKGNAFIVEESEIIA 633
                          + +  
Sbjct: 630 G-----ASYVKRFNVTGVTR 644


>gi|296253512|gb|ADH04217.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 86/144 (59%), Positives = 110/144 (76%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR++ AM+  G D+   ++KSARIVG+VIGK HPHGD +VY +LVR+AQPF  R
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDSAVYATLVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL+ GQGNFG+IDGDS AA RYTEARMTQ+A  +L  +D++ VD++  Y+  +  P V 
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 169 PSKFPNLLANGTSGIAVGMATSIP 192
           P+K P LL NG+SGIAVGMAT + 
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKLA 144


>gi|298208511|ref|YP_003716690.1| DNA topoisomerase IV subunit A [Croceibacter atlanticus HTCC2559]
 gi|83848434|gb|EAP86303.1| DNA topoisomerase IV subunit A [Croceibacter atlanticus HTCC2559]
          Length = 897

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 148/728 (20%), Positives = 280/728 (38%), Gaps = 101/728 (13%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+        ++     +    ++ +L YA   I ERA+P + DGFKPV RRI+H+M +
Sbjct: 21  DNLEQPELEPTQDDVLTKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKD 80

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-D 122
           +       + K A IVG  + + HPHGD S+ D++V++ Q    +  LI  QGN+GNI  
Sbjct: 81  L---DDGRYNKVANIVGHTM-QYHPHGDASIGDAMVQVGQ----KDLLIDMQGNWGNILT 132

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RY EAR+++ A  +L   +    D++ +Y+    EP+  P +FP LLA G  G
Sbjct: 133 GDRAAASRYIEARLSKFALEVL--FNPKITDWQLSYDGRRKEPINLPVRFPLLLAQGAEG 190

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVG++T I  HN  E+ +A++  +      I         PDF TG         I  +
Sbjct: 191 IAVGLSTRILPHNFIELIDASIKHLQGKRFKIY--------PDFQTG-----GEADI-SN 236

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G  G +VR R  + +  +    ++++EIPY    + LI+ I +    K    ++ I 
Sbjct: 237 YNDGLRGGKVRVRAKISQ--QDKNTLLISEIPYGTTTTTLIDSILKA-NDKGKIKIKKIE 293

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D +A +V I+      ++ PD  +++++  +  E        ++     P+ + +  IL+
Sbjct: 294 DNTAANVEIL-VHLPPNISPDKTIDALYAFTRCEESISPLSCIII-NNRPEFIGVSEILR 351

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIR--------NEDK 412
               H   +L      ++  ++ +     L+ + I      +I             ++  
Sbjct: 352 RSTDHTVSLLKSDLEIKLDELESQWHYASLERIFIENRIYRDIEEEETWEGVIQAIDKGL 411

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                  + ++TE  +  +  +R++ + K +  + + ++D L  + E++   L       
Sbjct: 412 KPHTAHLKRAVTEEDIVRLTEIRIKRISKFDIDKAQQKIDALEDQIEEVKHHL---DHLV 468

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
                    +K+ + K  D       F ++           +        + ++      
Sbjct: 469 EFAINYFANLKKDYGKDKDRKTELKAFEDIEATKVVIRNTKLYVNRAEGFIGTSLKRDE- 527

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
                                       D I+  + DG        +      +   + +
Sbjct: 528 --------------------YVTDCSDIDDIICFTEDGTMMVTKVDSKTFIGKNIIHVAV 567

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT--------RKGKTF--- 641
               +    I      D+       S          + +  +         +  K F   
Sbjct: 568 FKKKDKR-TIYNMIYRDAK------SRNTYMKRFAVTSMTRDREYNMGSDKKNTKVFYFS 620

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRL----------Q 690
              + E ++  V       V       K L F +    +M+ +G+GV+            
Sbjct: 621 ANPNGEAEVVTVYLRQVGQV-------KKLKFEV-DFSDMAIKGRGVKGNIVTKHPVKRI 672

Query: 691 SYKDGGIS 698
             K+ G+S
Sbjct: 673 ELKEEGVS 680


>gi|182411928|ref|YP_001816994.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutus terrae PB90-1]
 gi|177839142|gb|ACB73394.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutus terrae PB90-1]
          Length = 708

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 149/691 (21%), Positives = 269/691 (38%), Gaps = 85/691 (12%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +   L       +L YA   I +RA+P + DG KPV RRI+H M EM       F K A 
Sbjct: 62  EEAPLAVNYRNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTMWEM---EDGRFHKLAN 118

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARM 136
           IVG  + + HPHGD S+  +LV L Q    R  L+  QGNFGN + GD AAA RY EAR+
Sbjct: 119 IVGATM-RFHPHGDASIGAALVGLGQ----RGFLVEPQGNFGNLLTGDDAAAPRYIEARL 173

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A+ +L   +     ++ +Y+    EPV  P+KFP +L  G  GIAVG+AT I  HN 
Sbjct: 174 TAFAKDVL--FNPKTTPWQLSYDGRAREPVTLPAKFPIVLLEGAEGIAVGLATKILPHNF 231

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            ++C AA+  +      I         PDFPTGG+         +  R G+   ++RA+ 
Sbjct: 232 NDLCRAAINHLQGKTFRIY--------PDFPTGGVADF--SEYNDGERGGK--VKIRAKI 279

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +       + + +TE+P+      LIE I     AK    +  + D +A+ V I+    
Sbjct: 280 EIR----SKYLLAITELPFGSTTESLIESI-LAANAKGKIKIRHVDDNTADAVEIL-VHL 333

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  DP+ L++ +++ +  +T       V+   + P  + +  ILK  +   + +L R  
Sbjct: 334 PQGSDPEKLIQQLYVFTACQTNLSPAACVIEDDK-PHFLGVREILKRSVDKTKALLKREL 392

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------------LT 424
             R   ++++        I     + I   I      + V+                 +T
Sbjct: 393 EIRQAELEQQWHWDSLERIFI--EERIYRRIEKSKTWQSVLDEIREGLQPFLKQLRRPVT 450

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           ++ +  +  +R++ +     +Q     + +   + ++     + K           +++E
Sbjct: 451 DDDITRLTEIRIKRISAYNRFQAD---EAIKKIEAELRETKANLKALTAYAVAWFEQLQE 507

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            + K     +RRT++ E+ + + A   + +   + + V   +     + + H        
Sbjct: 508 KYGK---GLKRRTSYDEIEQINAA---EVVSANQRLYVNREDGFIGLNWRQHEY------ 555

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
                           D ++ L  DG          +          +            
Sbjct: 556 ---------VQDCTILDSVVCLMRDGSLKVSKVAEKVFMGRDIIHCAVFPKDGDPNFYTM 606

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD----- 659
            +    + K           +  +        +G   + +        + K   +     
Sbjct: 607 VYQDKESGK-AFAKRFQIGGLSRDKLYSLVKSEGSRVVYLE-------ISKTEKEMPKKL 658

Query: 660 HVAVVGENRKLLI---FSIDQIPEMSR-GKG 686
            + + G +   +    F +D++P  SR  KG
Sbjct: 659 RIFIDGRSGARVREFDFELDRVPVSSRSAKG 689


>gi|312889464|ref|ZP_07749016.1| DNA topoisomerase (ATP-hydrolyzing) [Mucilaginibacter paludis DSM
           18603]
 gi|311298016|gb|EFQ75133.1| DNA topoisomerase (ATP-hydrolyzing) [Mucilaginibacter paludis DSM
           18603]
          Length = 914

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 155/713 (21%), Positives = 289/713 (40%), Gaps = 88/713 (12%)

Query: 6   ISNSNTLVEENVKA--VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S   +  + N     + L    E  +L YA   I +RA+P + DG KPV RRI+H++ E
Sbjct: 1   MSEEESQGDNNKLHNIIPLDGLYENWFLDYASYVILDRAVPHIYDGLKPVQRRILHSLKE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-ID 122
           M       F K+A ++G  + K HPHGD S+ D++V++ Q  +     I  QGN+G+ + 
Sbjct: 61  M---DDGRFNKAANVIGNTM-KYHPHGDASIGDAMVQIGQKNLM----IDCQGNWGDPVT 112

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDSAAA RY EAR+++ A  +    + D   ++ +Y+  + EP+  P KFP LLA G  G
Sbjct: 113 GDSAAAPRYIEARLSKFAIDV--AFNPDTTIWQSSYDGRNREPITLPVKFPLLLAQGAEG 170

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVG+AT I  HN  E+ +A++A+++    ++         PDFPTGG+   S      +
Sbjct: 171 IAVGLATKILPHNFVELLDASIAVLNGIRPNLL--------PDFPTGGLADAS------N 216

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G+ G +VR R  + E  R    +V+TE+P+      L+E +      K    ++ I 
Sbjct: 217 YNEGQRGGKVRVRARIAE--RDKKTLVITEVPFSTTTGGLMESVV-AANDKGKIKIKSIV 273

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D ++++V I+       + PD+ +++++  +D E         +     P+ M ++ +L 
Sbjct: 274 DHTSKNVEIL-INLAPGISPDVTIDALYAFTDCEVSISP-NTCVIHDDKPRFMSVNDMLT 331

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           E   H +E+L +    R+  +  ++     L I                  + V+     
Sbjct: 332 ESTYHTKELLKQELEIRLNELKEKIFFSSLLKIFIQQGMYKNPAYETSANFEAVVEVLNG 391

Query: 423 LTEN------------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           L E                 +++  + S+ + +  +   ++  L  E ++++  L     
Sbjct: 392 LFEPFFSQFYRTILAEDYKKLIDKPMSSITRFDVKKADEQMKTLENEIKEVNHHLKHLN- 450

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             +      +++K+ + K  +      TF  V  +  A     +        + S     
Sbjct: 451 --DYAIAWFQKLKDKYGKGRERKTELRTFDRVEASQVALANVKLYANLEDGFIGS----- 503

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                                K        D I++   DG+       + +        +
Sbjct: 504 ----------------GLKKDKFIADCSDLDEIIVFRADGRCLVTKIQDKVFVGKEIIHV 547

Query: 591 QLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTF---LK 643
              +   +++  V   +Y      T  +   S  G     +E ++   T+  +       
Sbjct: 548 --GVFKKNDERTVYNMIYKDGANGTSYIKRFSVLG-VTRDKEYDLTKGTKGSRVLYFSAN 604

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRGK-GVRLQSYK 693
            + E ++  +       +       K L+F  D  ++    RG  G  L  Y 
Sbjct: 605 PNGEAEVVNIQLKPHSKL-------KKLVFDEDFAEVGIKGRGSMGNILTKYP 650


>gi|327406037|ref|YP_004346875.1| DNA topoisomerase [Fluviicola taffensis DSM 16823]
 gi|327321545|gb|AEA46037.1| DNA topoisomerase (ATP-hydrolyzing) [Fluviicola taffensis DSM
           16823]
          Length = 911

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 154/701 (21%), Positives = 269/701 (38%), Gaps = 72/701 (10%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
             D+       V+EN+  + L    E  +L YA   I ERA+P L DGFKPV RRI+H+M
Sbjct: 28  SSDSSPFEKNHVDENI--IPLSGLYENWFLDYASYVILERAVPSLHDGFKPVQRRILHSM 85

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN- 120
            E+       + K A ++G  + K HPHGD S+ D+LV+L Q    +  LI  QGN+GN 
Sbjct: 86  KEL---DDGRYNKVANVIGNTM-KYHPHGDASIGDALVQLGQ----KELLIDCQGNWGNT 137

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           + GD AAA RY EAR+++ A  ++   +     +  +Y+  + EP   P KFP LLA G 
Sbjct: 138 LTGDGAAAPRYIEARLSKFASHVV--FNPKTTSWLLSYDGRNKEPDNLPVKFPILLAQGA 195

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMA  I  HN  E+ + ++  +   +I I         PDF  GG+   +     
Sbjct: 196 EGIAVGMACKILPHNFIELIDQSINHLRGKKIEIF--------PDFLNGGMADFT----- 242

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  G  G +VR R  ++     +  +++ EIP+    + LIE + +    K    ++ 
Sbjct: 243 -NYNDGLRGGKVRVRAKIK--KVDNKTLIINEIPFGCTTTSLIESVIKA-NDKGKIKIKK 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           I D +A D  IV       + PD  +++++  +D E     N +V+  G  P+ M +  I
Sbjct: 299 IEDNTAADAEIV-IHLAPGVSPDKTIDALYAFTDCEVSISPNASVID-GDTPRFMGVTEI 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
           LK    +   +L +    R+  ++ +      + + I      +       E   + +  
Sbjct: 357 LKVNTDNTVTLLRKELEIRLAELESQWHFSTLEKIFIREEMYIDFKLYSDKEGLYQYMYK 416

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
                 +  V  I++  L+ L ++   +I     +   +           ++    +   
Sbjct: 417 RFEKFKKQFVREIIDEDLQRLTQIPMIRITRFDSDKADDLIAKLEAEM--EEVKKHLGNL 474

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           I    E +                        ++   E +    + +++  I + K +  
Sbjct: 475 IEYAIEYYKDLKKR--------------FGAGKERRTEMKVFDNIAASKVIIANRKLYVD 520

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                        +        D I++    GK                    +    + 
Sbjct: 521 IEEGFIGWGLKKTEAVNDCSEIDDIIVFFDTGKFIVTKVSEKKFVGKGIVHADVWKKGDK 580

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFLKV-------SSEEKM 650
              I      D        +     F+   + +   +  +G    K+       + E ++
Sbjct: 581 R-TIYHVMYQDGAGG---ATMMKRFFVNSVTRDTEYDLTRGIKGSKLLYFSVHPNGEREV 636

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVR 688
             V+     H+       K L F ID   +    R   G R
Sbjct: 637 VSVMLRPRPHL-------KRLRFDIDLGDLLIKGRQSAGNR 670


>gi|227537923|ref|ZP_03967972.1| DNA topoisomerase IV subunit A [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242225|gb|EEI92240.1| DNA topoisomerase IV subunit A [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 907

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 156/773 (20%), Positives = 293/773 (37%), Gaps = 115/773 (14%)

Query: 6   ISNSNTLVEENVKA------------VSLRFALEERYLAYALSTIKERAIPDLRDGFKPV 53
           +S+      +N +             + +    E  +L YA   I +RA+P + DGFKPV
Sbjct: 1   MSDETNYNNDNPEELTPQENEQTSNTIPITGLYENWFLDYASYVILDRAVPHINDGFKPV 60

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
            RRI+H++ EM       + K+A ++G  + K HPHGD S+ D++V+L Q    +  LI 
Sbjct: 61  QRRILHSLKEM---DDGRYNKAANVIGNTM-KYHPHGDASIGDAMVQLGQ----KNLLID 112

Query: 114 GQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            QGN+G+   GDSAAA RY E R+++ A  +    + +  +++ +Y+  + EPV  P KF
Sbjct: 113 CQGNWGDPTTGDSAAAPRYIEGRLSKFALEV--AFNPETTEWQLSYDGRNKEPVTLPVKF 170

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
           P LLA G  GIAVG+AT I  HN  E+ + ++ +++    +I         PDF TGG+ 
Sbjct: 171 PLLLAQGAEGIAVGLATKIMPHNFNELIDGSIQVLNGERPNIL--------PDFLTGGMA 222

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
             S      +Y  G  G ++R R  +EE  + +  I  TEIP+      LIE +      
Sbjct: 223 DCS------AYNEGMRGGKIRVRAKIEERDKKTLAI--TEIPFGTTTGGLIESVV-AAND 273

Query: 293 KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           K    ++ I D +AE+V I+       + PD+ +++++  +  E         +     P
Sbjct: 274 KGKIKIKKIEDNTAENVEII-VHLAPGISPDVTIDALYAFTACEVSISP-NTCVIKNDRP 331

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
             M ++ +L E   + + +L +    ++  +  ++     L I             N   
Sbjct: 332 HFMSVNDVLIENTKNTKNLLKQELEIKLHDLHEKIFFSTLLKIFIQEGMYKHPDYENSGD 391

Query: 413 PKPVMVS------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
              V+                 +       +++  + S+ + +  +   ++  L  E   
Sbjct: 392 FDTVVQVLNELFTPFFELFYRPIEPEDYKRLIDKPMSSITRFDVKKADEQMAALEEEI-- 449

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
             ++  + +Q           +++ + K  +       F +V     A     +      
Sbjct: 450 -KNVKRNLRQLTEYAIAWFERLRDKYGKGRERRTELRAFDKVEATQVALANAKLYVNREE 508

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
             + +                          +        D I++   DGK       + 
Sbjct: 509 GFIGT---------------------GMKKDEFVSDCSDIDDIIVFRGDGKYVVTKIQDK 547

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV--------EESEII 632
           +        +   +    ++  +   VY         +                +E ++ 
Sbjct: 548 VFVGKDIIHV--AVFKKGDERTIYNAVYKEGG-----TGTSYVKRFAVVGVTRDKEYDVS 600

Query: 633 ANTRKGKTF---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRG-KG 686
             ++  K        + E ++  V            + RK L F +D  +I    R  +G
Sbjct: 601 KGSKGSKILYFTANPNGEAEVINVQLKPH------SKLRK-LTFDLDLAEIAIKGRASQG 653

Query: 687 -------VRLQSYKDGGISDVICFKI--CEGLTWIDSAGRSYNRSENDLLGWL 730
                  V+  ++K  G+S +   KI   E L  ++   R     E D    +
Sbjct: 654 NIVSKYPVKKITFKSAGVSTLAGRKIWYDEILKRLNVDERGKYLGEFDGDDKI 706


>gi|167752022|ref|ZP_02424149.1| hypothetical protein ALIPUT_00264 [Alistipes putredinis DSM 17216]
 gi|167660263|gb|EDS04393.1| hypothetical protein ALIPUT_00264 [Alistipes putredinis DSM 17216]
          Length = 918

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 143/573 (24%), Positives = 234/573 (40%), Gaps = 56/573 (9%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L       +L YA   I ERA+P ++DG KPV RRI+HAM          + K A IVG+
Sbjct: 54  LTGMYRNWFLDYASYVILERAVPHVQDGLKPVQRRILHAM---KAVDDGRYNKVANIVGQ 110

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 111 TM-QYHPHGDASIKDALVQLGQ----KDLLIDCQGNWGNILTGDEAAAGRYIEARLSKFA 165

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   ++   ++  +Y+  + EPV  P KFP LLA G  GIAVG+A+ I  HN  E+ 
Sbjct: 166 LDVV--FNKKTTEWMRSYDGRNEEPVTLPVKFPLLLAQGADGIAVGLASKILPHNFIELI 223

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            AA+A +   +        +++ PDFPT G+I  SR      Y  G  G  V+ R  + +
Sbjct: 224 NAAIAHLQGRD--------FVLYPDFPTAGMIDVSR------YNDGLRGGTVKVRARISK 269

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           + + +  I  TEIPY       I+        K    +  + D +AE V I+        
Sbjct: 270 IDKRTLAI--TEIPYTTTTES-IKDSIVKANEKGKIKIRKVDDNTAEKVEII-VQVAPDE 325

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P  + +  IL+    H RE+L      R+
Sbjct: 326 SSDKTIDALYAFTDCEVSIAPNACVICDDK-PHFLGVSEILRRSAEHTRELLKMELEIRL 384

Query: 381 QAIDRRVE--ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             ++       L+ + I       I      E+    V       T+    A+    ++ 
Sbjct: 385 NELNEAWHAASLERIFIVNKLYQLIEGCKTREEAYAAVGKGLEPFTKVLRRAVTTEDIQR 444

Query: 439 LR-----KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L      ++  Y      + +   +E I    +      +        +++ + K     
Sbjct: 445 LTELKFIRISRYDSDKADNEIRQIEEDIAQTQHHLAHLTDYTIAYYERIRDKYGK---GR 501

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT   E             IE   + V  +     R      +             + 
Sbjct: 502 ERRTELREFDS----------IEATKVAVTNAKLYVDRVEGFFGIGK------SMKDSEF 545

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
                  D +++ + DG+       +      +
Sbjct: 546 VCDCSDIDDVIVFTKDGRYVITKVSDKAFFDKN 578


>gi|225012789|ref|ZP_03703223.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacteria bacterium
           MS024-2A]
 gi|225003063|gb|EEG41039.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacteria bacterium
           MS024-2A]
          Length = 865

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 137/599 (22%), Positives = 256/599 (42%), Gaps = 67/599 (11%)

Query: 4   DNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           D I++     +  N   V +    ++ +L YA   I ERA+P + DG KPV RRI+H+M 
Sbjct: 2   DEITDQTFPEDASNDSLVKVTGMYKDWFLDYASYVILERAVPAIEDGLKPVQRRILHSMK 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI- 121
           ++       + K A IVG  + + HPHGD S+ D++V++ Q    +  LI  QGN+GNI 
Sbjct: 62  DL---DDGRYNKVANIVGHTM-QYHPHGDASIADAMVQVGQ----KELLIDMQGNWGNIL 113

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            GDSAAA RY EAR+++ A  ++        D++ +Y+    EP+  P KFP LLA G  
Sbjct: 114 TGDSAAASRYIEARLSKFALEVV--FSPKVTDWQLSYDGRKKEPIHLPVKFPLLLAQGAE 171

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG++T I  HN  E+ +A++  +   +I +         PDF TGG+I        +
Sbjct: 172 GIAVGLSTKILPHNFNELLQASIQHLKGKKIDVY--------PDFQTGGVIDV------Q 217

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  G  G +VR R  + +  +    +V+ EIP+    S LI+ I +    K    ++ I
Sbjct: 218 NYNEGLRGGKVRVRAKITQ--QDKNTLVINEIPFSTNTSSLIDSILKA-NEKGKIKIKKI 274

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            D +A +V I+       + PD ++++++  +  ET       ++   + P  M ++ +L
Sbjct: 275 EDNTASEVEIL-VHLPNDISPDKMIDALYAFTACETSISPLGCLIIDNK-PHFMGVNEML 332

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY-----------LNIDEIIAIIRNE 410
           K    H  ++L      ++  ++ +        I                +E+IA I   
Sbjct: 333 KISTDHTVQLLKLELDVQLLELENQWHYASLERIFIENKIYRDIEEASTWEEVIAFIDKG 392

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            KP  +   + ++ E  +  +  +R++ + K +  + +     + A +  I  + N+   
Sbjct: 393 LKPH-IEHLKRAVVEEDIVRLTEIRIKRISKFDLDKAQ---QKIEALEGDIAEVKNNLAH 448

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             +      + +++ +    +       F +V         Q +        + ++    
Sbjct: 449 LIDYAIRYFKHLRKTYGTDKERKSEIRIFDDVDAKKVVVRNQRLYMNREEGFIGTSLRKD 508

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                                         D I++ + +GK   +   + +    +   
Sbjct: 509 E---------------------FVCDCSDIDDIIVFTQEGKMQVVKVDSKVFVGKNILH 546


>gi|260100984|gb|ACX31657.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 135

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/135 (55%), Positives = 105/135 (77%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNEEDS 163
           ++ VDF D ++  + 
Sbjct: 121 KETVDFVDNHDGTEK 135


>gi|89891249|ref|ZP_01202756.1| topoisomerase IV, subunit A [Flavobacteria bacterium BBFL7]
 gi|89516561|gb|EAS19221.1| topoisomerase IV,  subunit  A [Flavobacteria bacterium BBFL7]
          Length = 894

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 136/622 (21%), Positives = 256/622 (41%), Gaps = 70/622 (11%)

Query: 1   MGVDNISNSNTLVEENVKA-----VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHR 55
           M  +N     ++ +  ++        +    +E +L YA   I ERA+P + DGFKPV R
Sbjct: 1   MSEEN-EELESINDGEIQEPTESITRITGMYKEWFLDYASYVILERAVPAIEDGFKPVQR 59

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+ +M ++       + K A IVG  + + HPHGD S+ D++V++ Q    +  LI  Q
Sbjct: 60  RIMQSMKDL---DDGRYNKVANIVGHAM-QYHPHGDASISDAMVQIGQ----KDMLIDMQ 111

Query: 116 GNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           GN+GNI  GD AAA RY EAR+++ A  IL   +    +++ +Y+    EPV  P KFP 
Sbjct: 112 GNWGNIFTGDPAAASRYIEARLSKFALEIL--FNPKITEWQSSYDGRRKEPVNLPVKFPL 169

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
           LLA G  GIAVG++T +  HN  E+ +A++  +            + I PDFPTGG I  
Sbjct: 170 LLAQGAEGIAVGLSTKVLPHNFIELIDASIKHLQGK--------RFTIYPDFPTGGEIDV 221

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
           +      +Y  G  G +VR R  +         I++TEIPY    S LI+ I +    K 
Sbjct: 222 T------NYNDGLRGGKVRVRAKMH--APDKNTIIITEIPYSTNTSSLIDSILKA-NEKG 272

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
              ++ I D +A DV I+    +  + PD  M++++  ++ E+       V+   + P  
Sbjct: 273 KIKIKKIEDNTAADVEIM-IHLHSGISPDKTMDALYAFTNCESSISPLGCVIEDNK-PLF 330

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIR---- 408
           + +  +L+    H  ++L +    ++  ++ +     L+ + I      +I         
Sbjct: 331 VGVTEMLRRSADHTVDLLKQELEIQLDEVEEQWHFASLERIFIENRIYRDIEEEETWDGV 390

Query: 409 ----NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
               ++     +   + ++T + +  +  +R++ + K +  + + ++D L     ++   
Sbjct: 391 IAAIDKGLKPHIGHLKRAITVDDITRLTEIRIKRISKFDIDKAQQKIDALEERIAQLKHH 450

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L   +          + +K+ + +  +      TF ++           +        V 
Sbjct: 451 L---EHLIEYAIDYFKSLKKNYGEGRERKTEIKTFDDIVATKVVMRNTKLYVNRAEGFVG 507

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           +                                   D I++ + DG        +     
Sbjct: 508 TALKRDE---------------------YVTDCADIDDIIVFTKDGTMMVTKVDSKTFVG 546

Query: 585 GHGEAIQLLIDLNHNQDIVTAF 606
                + +    +        +
Sbjct: 547 KDIIHVAVFKKKDKRTIYNAIY 568


>gi|37998984|dbj|BAD00062.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae]
          Length = 140

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKTHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|70940757|ref|XP_740752.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56518684|emb|CAH79846.1| hypothetical protein PC000560.03.0 [Plasmodium chabaudi chabaudi]
          Length = 370

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 114/315 (36%), Positives = 177/315 (56%), Gaps = 25/315 (7%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S +  L++     V +   L + +L+YA   I  R + D RDG K V RRII +M E+  
Sbjct: 45  SQTKNLIKGEYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINK 104

Query: 67  DFGAA-FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK ARIVGEVIGK HPHGD+SVYD+LVRLAQ       LI+G GNFG+++  +
Sbjct: 105 GSDKKSYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNVLINGYGNFGSVEY-N 163

Query: 126 AAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           AAA RYTEAR++    +++L  ++++ VD+   ++  + EP V  SK P LL NG SGIA
Sbjct: 164 AAAMRYTEARISDFCYDVLLDEINDENVDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIA 223

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           V + T+IPSHN+ ++  A+++ + N +I+ ++L   I GPDF TGGII+  ++++   Y 
Sbjct: 224 VSILTNIPSHNLVDVINASISFLLNDKITNDELFNIIKGPDFSTGGIIITKKDTLRNIYN 283

Query: 245 LGRGGFRVRA-------------RWCVEE---------VGRGSWCIVVTEIPYQVQKSRL 282
            G+G   +R+                + E           +    +++  +P  V+ + L
Sbjct: 284 TGKGSIIIRSNVFYEYVHNNKTYTHHINELGNLENLESDNKSCKKLIIKNLPPNVKPNEL 343

Query: 283 IEKIAELIIAKRIPL 297
           IE I  ++  K+   
Sbjct: 344 IENIVTVLNEKKNEH 358


>gi|219815933|gb|ACL37053.1| GyrA [Salmonella enterica]
          Length = 135

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/134 (56%), Positives = 105/134 (78%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+
Sbjct: 2   IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 61

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A 
Sbjct: 62  VIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 121

Query: 142 LILQGVDEDAVDFR 155
            ++  ++++ VDF 
Sbjct: 122 ELMADLEKETVDFV 135


>gi|262189909|ref|ZP_06048228.1| DNA gyrase subunit A [Vibrio cholerae CT 5369-93]
 gi|262034207|gb|EEY52628.1| DNA gyrase subunit A [Vibrio cholerae CT 5369-93]
          Length = 653

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 136/571 (23%), Positives = 222/571 (38%), Gaps = 71/571 (12%)

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   
Sbjct: 1   MRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMR 60

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++ HRREV
Sbjct: 61  IVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFVDHRREV 119

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------- 415
           + RR+ F ++    R  IL+GL +A  NIDEII +IR+   P                  
Sbjct: 120 VTRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVA 179

Query: 416 ---------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                +   ++ LTE Q  AIL+LRL  L  LE  +I  E   L
Sbjct: 180 AMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQL 239

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L E   +  +L S ++    I  E+  ++  FS +        T         A     +
Sbjct: 240 LEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVV 299

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
                  V         + +      SA   KE D ++  L A+T D ILL ST GK Y 
Sbjct: 300 TLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYR 359

Query: 575 LPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEES 629
           +    L   S    G+ I  L+ L  N+ I        +     + + +  G        
Sbjct: 360 MKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSKDKFIFMATGDGTVKKTSLD 419

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----------- 677
           +       G   L +  E+ +  V    G+  + +  +  K++ F   +           
Sbjct: 420 QFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQP 479

Query: 678 --------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
                         +  M R   GVR     DG     +     EG   +      Y + 
Sbjct: 480 VLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTENGYGKR 538

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +        RG  G +  K   R+G  + +
Sbjct: 539 TSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 569


>gi|77166858|gb|ABA62405.1| DNA gyrase subunit A [Parachlamydia acanthamoebae]
          Length = 152

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 72/152 (47%), Positives = 104/152 (68%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              +++ YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +K A+I G+ 
Sbjct: 1   EDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISGDT 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
            G  HPHG+Q +Y +LVR+AQ ++ RYPL+ GQGNFG++DGD  AA RYTEAR+T  +  
Sbjct: 61  SGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTEARLTHASVQ 120

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           +++ +D++ V+    Y+E   EP VFPSKFP 
Sbjct: 121 LMEDLDKNTVEMVPNYDETKKEPTVFPSKFPM 152


>gi|124009385|ref|ZP_01694063.1| topoisomerase IV subunit A [Microscilla marina ATCC 23134]
 gi|123985047|gb|EAY24998.1| topoisomerase IV subunit A [Microscilla marina ATCC 23134]
          Length = 663

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 159/699 (22%), Positives = 279/699 (39%), Gaps = 100/699 (14%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++    ++ +L YA   I ERA+P   DG KPV RRI+HAM EM       + K A +
Sbjct: 7   KVTISEVYKDWFLDYASYVILERAVPSGYDGLKPVQRRILHAMKEM---DDGRYNKVANV 63

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMT 137
           +G+ + + HPHGD S+ D+LV + Q    +  L+  QGN+G+I  GDSAAA RY E R++
Sbjct: 64  IGQAM-QYHPHGDASIGDALVNMGQ----KDLLVDTQGNWGDINTGDSAAAPRYIEGRLS 118

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + A  ++   +    +++ +Y+    EPV  P KFP LLA GT GIAVG+AT +  HN  
Sbjct: 119 KFALDVI--FNPQTTEWQLSYDGRKKEPVNLPVKFPLLLAQGTEGIAVGLATKVMPHNFN 176

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A++ L+   E++I         PDF TGG +  +      +YR G  G R+R R  
Sbjct: 177 ELIDASIELLRGNEVTIY--------PDFATGGTMDVT------NYRHGVKGGRLRVRVD 222

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +E+V R    I    +PY V    LIE I +         ++ I D +A+DV I     +
Sbjct: 223 IEQVSRKILAI--KNVPYGVTTENLIESIKKA-NDANKIKVKKIIDNTAKDVEIQ-VHLS 278

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             ++P+  +++++  ++ E     N  V+   + P  + ++ +LK      +++L +   
Sbjct: 279 TGVEPEQTIDALYAFTNCEVSISPNACVILDDK-PCFIKVEELLKINTQKTKDLLEQELL 337

Query: 378 FRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            R   +  ++     + + I      +I      E   + +        ++    I    
Sbjct: 338 IRKSELQEKMLYSSLEKIFIENRIYRDIEECETWEAVLETIDKGLNPFKQDFYREIGEED 397

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKI-----DSLLNSGKQQWNQIACEIREVKEIFSKST 490
           L  L +++  +I         E  K        +  + K          RE+K+ + K  
Sbjct: 398 LIRLTEIKIKRISKFDSFKADELMKRLGDELAEVERNLKSLTKYAIRYFRELKKKYGKDR 457

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           +   RRT   E                     + +    I + K +              
Sbjct: 458 E---RRTIIQEFED------------------INAKDVVINNQKLYVNREDGFIGYGLKK 496

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
            +  +     D ++    DGK   +     +    +               I+   V+D 
Sbjct: 497 DEYVVDCSDIDEVITFCEDGKYKIVKIAPKVFIGKN---------------IIHVAVFDK 541

Query: 611 TCKLLV--------VSSKGNAFIVEES--------EIIANTRKGKTF---LKVSSEEKMK 651
           + K LV        VS +  A   +          ++   T + K     +    E +  
Sbjct: 542 SDKNLVYNAIYRDGVSGRAMAKRFQVKAVIRDREYDVTKGTPRSKLLYFSINPKGETEEV 601

Query: 652 LVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVR 688
            V            +   KL+ +   +I    +  +G  
Sbjct: 602 SVRLTR------ASKAKNKLITYDFAEIDVKGKSAQGNI 634


>gi|281421903|ref|ZP_06252902.1| DNA topoisomerase 4 subunit A [Prevotella copri DSM 18205]
 gi|281404145|gb|EFB34825.1| DNA topoisomerase 4 subunit A [Prevotella copri DSM 18205]
          Length = 953

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 144/713 (20%), Positives = 272/713 (38%), Gaps = 68/713 (9%)

Query: 2   GVDNISNSNTLVEENVKAVS---------LRFALEERYLAYALSTIKERAIPDLRDGFKP 52
             D+    +T    + K V+         L    +  +L YA   I ERA+P + DG KP
Sbjct: 31  AEDDNEEISTEKHSDYKPVNRFDASAVHHLSGMYQNWFLDYASYVILERAVPHIEDGLKP 90

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI+H+M  M       + K A IVG  + + HPHGD S+ D+LV++ Q    +  LI
Sbjct: 91  VQRRILHSMKRM---DDGRYNKVANIVGHTM-QFHPHGDASIGDALVQMGQ----KDLLI 142

Query: 113 SGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
             QGN+GNI  GD AAA RY EAR+++ A  ++   +    D++ +Y+  + EP+  P+K
Sbjct: 143 DTQGNWGNILTGDRAAAPRYIEARLSKFALDVV--FNPKTTDWQLSYDGRNKEPITLPAK 200

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FP LLA G  GIAVG+++ +  HN  EIC+AA+  +      +         PDFPTGG 
Sbjct: 201 FPLLLAQGAEGIAVGLSSKVLPHNFNEICDAAVHYLKGEPFQLY--------PDFPTGGA 252

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           I  S+      Y  G+ G  ++ R  +      +  +V++EIP+      LI+ I + + 
Sbjct: 253 IDVSK------YNDGQRGGALKVRAKI--DKLDNKTLVISEIPFSKTTGSLIDSITKAVE 304

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
             +I     + D ++ +V I+          D  M++++  SD E     N  V+   + 
Sbjct: 305 KGKIK-ARKVDDVTSANVEIL-VHLAPGTSSDKTMDALYAFSDCEINISPNCCVIEDNK- 361

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRN 409
           P  + +  +L+  +     +L +    R   ++ ++     + + I      E       
Sbjct: 362 PVFLTISDVLRHSVDRTMGLLRKELMIRKGELEEQLFFSSLERIFIEERIYKERKFEQSK 421

Query: 410 EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN----LLAEKEKIDSLL 465
                   +               +  + + +   ++  +  D      +  +  +    
Sbjct: 422 SQDEVVAFIDSKLEPFKDKLFTAEVDGKGMVEYAFHREITREDILKLLEIKMQRILKYNK 481

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +   +   +I  E+ E++   +  TD+      + E  +           E      +  
Sbjct: 482 DKADELLMKIKAELAEIENDLAHMTDV---TINWFEYLKGKYGKNHPRKTEIRNFDTIEV 538

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +    + K +               +   +    D I++   DGK       + +    
Sbjct: 539 TKVVEANQKLYINRQEGFVGTGLKKDEFVCNCSDLDDIIIFYKDGKFKVTKVADKIFVGK 598

Query: 586 HGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFL 642
           +   +Q+    +        +         +    + N   +   ++   T+   G   +
Sbjct: 599 NILHVQVFKKNDKRTIYNCVYRDGKQGDYFI---KRFNVTAMTRDKLYDITQGTPGSRVI 655

Query: 643 ----KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI---DQIPEMSR-GKGV 687
                 + E ++             + + R+ + F       I    R  KG 
Sbjct: 656 YFTANPNGEAEIIKCTMEPD-----LTKKRQSI-FLEKDFSDILIKGRAAKGN 702


>gi|261599189|gb|ACX85657.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 111/157 (70%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I+ERA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V +  
Sbjct: 64  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAW 123

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            +++ + EP V P+ FPNLL NG +GI+ G AT IP 
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPP 160


>gi|33338054|gb|AAQ13649.1|AF173982_1 DNA gyrase [Pasteurella multocida]
          Length = 139

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 82/139 (58%), Positives = 105/139 (75%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR++ AM E G  +   ++KSARIVG+VIGK HPHGD +VY +LVR+AQPF  
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYGTLVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGD+AAA RYTEARMT++A  +L  +D++ V+F   Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 168 FPSKFPNLLANGTSGIAVG 186
            P+K P LL NG+SGIAVG
Sbjct: 121 LPTKVPALLVNGSSGIAVG 139


>gi|294630344|ref|ZP_06708904.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces sp. e14]
 gi|292833677|gb|EFF92026.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces sp. e14]
          Length = 685

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 141/581 (24%), Positives = 255/581 (43%), Gaps = 26/581 (4%)

Query: 195 NVQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+   A   ++NPE S E+L    +E I GPDFPTG  +V  R+ I E+YR GRG  
Sbjct: 19  NLREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGA-LVVGRKGIEEAYRTGRGSI 77

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RDE S+   
Sbjct: 78  TMRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTG 136

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  +D++T F  NM  L    VP+ + LD  ++ W+ H+ 
Sbjct: 137 QRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD-GVPRTLSLDAFIRHWVTHQI 195

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTEN 426
           EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +              + E 
Sbjct: 196 EVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVDVARGGLMGLLEIDEI 255

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  +Q   ++ E+  + E +
Sbjct: 256 QANAILEMQLRRLAALERQKIVQEHDELQAKINEYNEILASPVRQRGIVSAELAAIVEKY 315

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                                A     +       +  +     R+ K     +     K
Sbjct: 316 GDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLK 375

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV- 603
           E D +     + T   +L  +  G+ Y   A  L        G+ +  L+    ++ I  
Sbjct: 376 EDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDESIAQ 435

Query: 604 --TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEKMKLVVKV 656
                 Y++   L++ +  G        +  +    G   + +       ++++     V
Sbjct: 436 IRAIRDYEAVPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLREREDGTDDELIGAELV 495

Query: 657 T-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWI 712
           +  D + ++ +  + + F+     +  M R   GV+  S+++G     +   +  G    
Sbjct: 496 SADDDLLLISKKAQSIRFTASDDTLRPMGRATSGVKGMSFREGDELLSMNV-VRPGTFVF 554

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    Y +        +  RGG+G    K     G+ + +
Sbjct: 555 TATDGGYAKRTRVDEYRVQGRGGLGIKAAKIVEDRGELVGA 595


>gi|149278653|ref|ZP_01884789.1| DNA topoisomerase IV subunit A [Pedobacter sp. BAL39]
 gi|149230648|gb|EDM36031.1| DNA topoisomerase IV subunit A [Pedobacter sp. BAL39]
          Length = 1019

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 163/741 (21%), Positives = 288/741 (38%), Gaps = 89/741 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +    E  +L YA   I +RA+P + DG KPV RRI+H++ EM       F K+A ++
Sbjct: 18  IPINGLYENWFLDYASYVILDRAVPHIHDGLKPVQRRILHSLKEM---DDGRFNKAANVI 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+ D++V++ Q    +  LI  QGN+G+ I GDSAAA RY EAR+++
Sbjct: 75  GNTM-KYHPHGDASIGDAMVQIGQ----KDLLIDCQGNWGDPITGDSAAAPRYIEARLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +    + D   ++ +Y+  ++EP+  P KFP LLA G  GIAVG+AT +  HN  E
Sbjct: 130 FANEV--AFNSDTTVWQLSYDGRNNEPITLPIKFPLLLAQGAEGIAVGLATKVMPHNFVE 187

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A++ ++     +I         PDF TGG+   S      +Y  G  G +VR R  +
Sbjct: 188 LLDASMEVLRGNRPNIL--------PDFFTGGMADFS------AYNEGMRGGKVRVRAKI 233

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E  +    +V+TEIP+      +I+ I      K    ++ I D +A +V IV      
Sbjct: 234 TE--KDKKTLVITEIPFSTTTGSVIDSILSA-NDKGKIKIKKIEDNTAANVEIV-VQLAP 289

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            + PD+ +++++  +  E         +  G  P  M ++ IL E   H + +L +    
Sbjct: 290 GISPDVTIDALYAFTSCEVSISP-NTCIIKGDKPHFMSVNDILTENTMHTKALLKQELEI 348

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN------------ 426
           R+  +  ++     L I             N      V+    +L E             
Sbjct: 349 RLNELQEKIFFSSLLKIFIQEGMYKHPEYENSGNFDAVVAVLNNLFEPFLPQLYRPIQPE 408

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
               +++  + S+ + +  +   ++  L  E + + + L       +      +++K+ +
Sbjct: 409 DFKKLIDKPMSSITRFDVKKADEQMQALADEIKVVKNHLRH---LTDYAIAWFQKLKDKY 465

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K          F  V  +  A     +        + +  G                  
Sbjct: 466 GKGRQRKTEIRLFDRVEASKVALANVKLYMNREDGFIGTGSGL----------------- 508

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
                +        D +++   +GK       +           Q+    +    I    
Sbjct: 509 --RKDEFVADCSDIDEVIVFRENGKCIITKVADKTFVGKGILHAQVFKKGDER-TIYNMI 565

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFL----KVSSEEKMKLVVKVTGDHV 661
             D    +  +       +  + E  +    KG   L      + E ++  V       +
Sbjct: 566 YKDGESGISYIKRFAVVGVTRDKEYDLTKGTKGSRVLYFTANPNGEAEVVNVQLKPHTKL 625

Query: 662 AVVGENRKLLIFSID--QIPEMSRG-KGVRLQS-------YKDGGISDVICFKI--CEGL 709
                  K L F ID  +I    RG +G  +          K  G+S +   KI   + L
Sbjct: 626 -------KKLQFDIDYAEIAIKGRGSQGNIVSKYPIKKVLLKTKGVSTLAGLKIWYDDLL 678

Query: 710 TWIDSAGRSYNRSENDLLGWL 730
             ++  GR     E D    +
Sbjct: 679 RRLNVDGRGKYLGEFDGEDKI 699


>gi|297621778|ref|YP_003709915.1| DNA topoisomerase IV, subunit A [Waddlia chondrophila WSU 86-1044]
 gi|297377079|gb|ADI38909.1| DNA topoisomerase IV, subunit A [Waddlia chondrophila WSU 86-1044]
          Length = 633

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 136/606 (22%), Positives = 254/606 (41%), Gaps = 49/606 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +++  ++ Y+ YA   I +RAIPD+ DG KPV RRI+H + ++         K A + G
Sbjct: 3   DIKYLYKDNYIKYASYVILDRAIPDVVDGLKPVQRRILHTLYKI---HDGKLHKVANVAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
           + +   HPHGD ++ D+LV +A     +   +  QGNFGNI  GD AAA RY E R++ +
Sbjct: 60  QTMA-YHPHGDAAIIDALVNMA----NKGFFLDCQGNFGNIYTGDPAAAARYIETRLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+  L   + D  +   +Y+  + EPV  P+K P +L  G SGIAVGM+T+I  HN  E+
Sbjct: 115 AKDTL--FNPDLTETVSSYDGRNQEPVCLPAKVPVVLMQGASGIAVGMSTNILPHNFIEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +A+++  +  I         PDF TGGI+  S       Y  GRG  ++RA+  ++
Sbjct: 173 LQAEIAVLEGKDFEIY--------PDFITGGIMDVSE------YDKGRGRLKLRAKIDIQ 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       +V++EI +      LI  I E     +I  ++ I D +A+ V I      R 
Sbjct: 219 DPKT----LVISEICHGTTTESLIRSIDEAAKRGKIK-IDSINDYTADKVEIE-IKLPRG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA-----HRREVLFR 374
                L++S++  +D E      M ++    +P    +D IL+          ++E+   
Sbjct: 273 HYAQDLIDSLYAYTDCEVSINC-MCMVIKDHLPWETTVDEILRLHAELLKGYLKKELELE 331

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL-----TENQVD 429
           +     +  D+ +E +      Y +++ + +  +        +           T++ ++
Sbjct: 332 KDRLLEKIFDKTLEQIFIENRLYKHLETVKSSDKLRSTVADSLKPFHEQLSRVPTKDDIE 391

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +L + +R + K +  + + E+  L  E      +    K         ++E+   +   
Sbjct: 392 KLLQIPIRRISKFDMDKNQEEIAGLRKEL---ARVEKDLKSIKQFTIKYLKELVSKYRDI 448

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                R     E+ +   AT +  +        V +      +++  + D   +     D
Sbjct: 449 YTRRTRVGEIQELDKRAIATKELKVGIDLKSGFVGTKVSGSETIEGTNFDKLLV--LYQD 506

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
                 +    D +   +       L     +    + +    L        I+  F+ D
Sbjct: 507 GSYRVTNIPEKDYVHASNNKAVFVGLADKQTVFNVAYKDPKSHLCFAKRF--IIKQFILD 564

Query: 610 STCKLL 615
              +  
Sbjct: 565 KEYRFF 570


>gi|255533353|ref|YP_003093725.1| DNA topoisomerase IV subunit A [Pedobacter heparinus DSM 2366]
 gi|255346337|gb|ACU05663.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter heparinus DSM 2366]
          Length = 977

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 164/742 (22%), Positives = 296/742 (39%), Gaps = 93/742 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +    E  +L YA   I +RA+P + DG KPV RRI+H++ EM       F K+A ++
Sbjct: 18  IPINGLYENWFLDYASYVILDRAVPHINDGLKPVQRRIMHSLKEM---DDGRFNKAANVI 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+ D++V++ Q    +  LI  QGN+G+ I GD+AAA RY EAR+++
Sbjct: 75  GNTM-KYHPHGDASIGDAMVQIGQ----KDLLIDCQGNWGDPITGDNAAAPRYIEARLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  ++   + D   ++ +Y+  ++EPV  P KFP LLA G  GIAVG+AT +  HN  E
Sbjct: 130 FANEVV--FNGDTTIWQLSYDGRNNEPVTLPVKFPLLLAQGAEGIAVGLATKVMPHNFIE 187

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A++  +     +I         PDF TGG+   S      +Y  G  G R+R R  +
Sbjct: 188 LLDASIEALQGHRPNIL--------PDFFTGGMADFS------AYNEGMRGGRIRVRAKI 233

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E  +    +V+TEIPY      +I+ I      K    ++ I D +A  V IV      
Sbjct: 234 TE--KDKKTLVITEIPYSTTTGSVIDSILSA-NDKGKIKIKKIEDNTAAHVEIV-IQLAP 289

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            + PD+ +++++  +  E         +     PQ + ++ IL E   H + +L +    
Sbjct: 290 GISPDVTIDALYAFTSCEVSISP-NTCIIKDEKPQFLSVNDILIENSMHTKALLKKELEI 348

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN------------ 426
           ++  +  ++     L I         A   N    + V+     L E             
Sbjct: 349 KLHELQEKIFFSSLLKIFIQEGMYKNAEYENSVNFEMVVEVLNRLFEPFKPGLYREILPE 408

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
               +++  + S+ + +  +   ++  L  E + + + L    +         +++K+ +
Sbjct: 409 DFKKLIDKPMSSITRFDVKKADEQMKALSDEIKVVKNHLRHLTE---YAIAWFQKLKDKY 465

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K    GR R T   +                    V +++  + ++K +          
Sbjct: 466 GK----GRERKTEIRLFDR-----------------VEASKVALANVKLYMNREDGFIGT 504

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
                +        D +++   DGK       +              +    ++  +   
Sbjct: 505 GLRKDEFVADCSDIDELIVFREDGKCIITKVADKTFVGKGILHA--QVFKKGDERTIYNM 562

Query: 607 VYDSTCKLL-VVSSKGNAFIVEESEI-IANTRKGKTFL----KVSSEEKMKLVVKVTGDH 660
           +Y      +  +       +  + E  +    KG   L      + E ++  V       
Sbjct: 563 IYKDGASGVSYIKRFAVVGVTRDKEYDLTKGSKGSKVLYFTANPNGEAEIVTVQLKPHSK 622

Query: 661 VAVVGENRKLLIFSID--QIPEMSRG-KG-------VRLQSYKDGGISDVICFKI--CEG 708
           +       K L F +D  +I    RG +G       V+    K  G+S +   KI   + 
Sbjct: 623 L-------KKLQFDLDFAEIAIKGRGSQGNIVSKYPVKKILLKSKGVSTLSGLKIWYDDL 675

Query: 709 LTWIDSAGRSYNRSENDLLGWL 730
           L  ++  GR     E D    +
Sbjct: 676 LRRLNVDGRGKYLGEFDGEDKI 697


>gi|254444676|ref|ZP_05058152.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198258984|gb|EDY83292.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 679

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 124/601 (20%), Positives = 237/601 (39%), Gaps = 60/601 (9%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L  + +  +L YA   I +RA+P L DG KPV RRI+H++ E+       + K A +VG
Sbjct: 37  PLANSYQNWFLEYASYVILDRAVPALLDGLKPVQRRIMHSLKEL---DDGRYNKVANVVG 93

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQV 139
             + + HPHGD S+Y ++V + Q    R  LI  QGN+GN + GD AAA RY EAR++  
Sbjct: 94  HSM-RYHPHGDASIYSAMVGMGQ----RNLLIDTQGNWGNTLTGDGAAAARYIEARLSPF 148

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++   +     ++ +Y+  + EP   P KFP LL+ G  GIAVG+A  I  HN  EI
Sbjct: 149 ARDVV--FNPKTTKWQLSYDGRNKEPTNLPVKFPLLLSEGAEGIAVGLACKILPHNFNEI 206

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +AA+  ++  E  +         PDF TGG+   +  +  +  R GR    VRA + + 
Sbjct: 207 IDAAIYHLNGDEFELY--------PDFETGGVADFTNYN--DGLRGGR--VLVRAVFDIV 254

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                 + IV+ EIP+      LI+ I       +I + +   + S +   +        
Sbjct: 255 ----SKYQIVIREIPFGCTTGSLIDSILSANSKGKIKIKKIEDNTSEKAEIL--ITLPPG 308

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            D    ++++++ +D +     N  ++     P  + +  +L+    + + +L      +
Sbjct: 309 SDAQATIDALYVFTDCQVSIAPNACIIEDD-TPLFIGVSEMLRRSADNVKALLKLELEIK 367

Query: 380 MQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
           +  ++ +     L+ + I       I      +     +              + +  + 
Sbjct: 368 LAELEEKWHFDSLERIFIEERIYRRIEECETWDAVISEIHKGLDPFKPTLKREVTDEDVA 427

Query: 438 SLRKLE-----EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L ++      +Y      D +   +++I +   + K            +KE + K  + 
Sbjct: 428 RLTEIRIKRISKYNSFKANDEIKKTEKEIRATKRNLKSLTKFATAYFENLKEKYGKGRER 487

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             R  +F  +  A+ A   + +        +  +                          
Sbjct: 488 RTRIESFETIKAAEVALPTEKLFVNREDGFIGFSLKKDE--------------------- 526

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                   D ++  S+DG        + +      + + +      +++ +   VY    
Sbjct: 527 FLCECSQLDDVIAFSSDGTFRVSRVADKVFMGKDIQHVAVWKK--GDEETIYDMVYRDGA 584

Query: 613 K 613
           +
Sbjct: 585 R 585


>gi|260062970|ref|YP_003196050.1| DNA topoisomerase IV subunit A [Robiginitalea biformata HTCC2501]
 gi|88784538|gb|EAR15708.1| DNA topoisomerase IV subunit A [Robiginitalea biformata HTCC2501]
          Length = 907

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 142/647 (21%), Positives = 252/647 (38%), Gaps = 76/647 (11%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFAL-EERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  +   N     E   +A++    + ++ +L YA   I ERA+P + DGFKPV RRI+H
Sbjct: 1   MEENAPPNDPNQQEAEQEALTRVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMH 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           A+ EM       + K A +VG+ + + HPHGD S+ D++V++ Q    +  LI  QGN+G
Sbjct: 61  ALKEM---DDGRYNKVANVVGQTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWG 112

Query: 120 NI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           NI  GD AAA RY EAR+++ A  ++        +++ +Y+    EPV  P KFP LLA 
Sbjct: 113 NILTGDGAAASRYIEARLSKFALEVV--FSPKITEWQLSYDGRKKEPVHLPVKFPLLLAQ 170

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GIAVG++T I  HN  E+ +A++  +      +         PDFPT GII      
Sbjct: 171 GAEGIAVGLSTKILPHNFIELIDASIKHLQGKRFKLY--------PDFPTAGIIDIG--- 219

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
              +Y  G  G +VR R  + +  +    +V++EIPY    S LI+ I +    K    +
Sbjct: 220 ---NYNDGERGGKVRVRARIAQ--QDKNTLVISEIPYGTNTSSLIDSILKA-NDKGKIKI 273

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           + I D +A +V I+       + PD  +++++  +  ET       ++   + P  M + 
Sbjct: 274 KKIEDNTAAEVEIL-VHLPSGISPDKTIDALYAFTACETSISPLGCIIEDNK-PVFMGVS 331

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVE--ILKGLLIAYLNIDEIIAIIR-------- 408
            +L+    H  E+L       +  +  +     L+ + I      +I             
Sbjct: 332 EMLRRSTDHTVELLQAELEILLGELQEQWHAASLERIFIENRIYRDIEEEETWEGVIAAI 391

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
            +         R  +TE  +  +  +R++ + + +  + +  LDNL     +    L   
Sbjct: 392 GKGLKPHTGHLRREVTEEDIVRLTEIRIKRISRFDLDKAQEHLDNLEKRIAETKHHL--- 448

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
               +      RE+K+ F    +       F E+           +        + ++  
Sbjct: 449 AHLTDYAIDYFRELKKNFGAGRERKSEIRVFDEIEATKVVIRNTKLYVNREEGFIGTSLR 508

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
                                           D I++ +  G+       +      +  
Sbjct: 509 KDE---------------------YVTDCSDIDDIIVFTKSGQMMITRVDSKTFVGKNII 547

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG--NAFIVEESEIIA 633
            + +    +         +Y            G         +    
Sbjct: 548 HVAVYKKKDKRTTYN--MIYKDG-------RGGPSYVKRFNVTAFTR 585


>gi|296253510|gb|ADH04216.1| GyrA [Gallibacterium anatis]
 gi|296253518|gb|ADH04220.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/144 (59%), Positives = 111/144 (77%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR++ AM+  G D+   ++KSARIVG+VIGK HPHGD +VY++LVR+AQPF  R
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDFAVYNTLVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL+ GQGNFG+IDGDS AA RYTEARMTQ+A  +L  +D++ VD++  Y+  +  P V 
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 169 PSKFPNLLANGTSGIAVGMATSIP 192
           P+K P LL NG+SGIAVGMAT + 
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKLA 144


>gi|296253508|gb|ADH04215.1| GyrA [Gallibacterium anatis]
 gi|296253514|gb|ADH04218.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/144 (59%), Positives = 110/144 (76%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR++ AM+  G D+   ++KSARIVG+VIGK HPHGD +VY +LVR+AQPF  R
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDFAVYATLVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL+ GQGNFG+IDGDS AA RYTEARMTQ+A  +L  +D++ VD++  Y+  +  P V 
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 169 PSKFPNLLANGTSGIAVGMATSIP 192
           P+K P LL NG+SGIAVGMAT + 
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKLA 144


>gi|326336678|ref|ZP_08202846.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691148|gb|EGD33119.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 868

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 153/677 (22%), Positives = 279/677 (41%), Gaps = 86/677 (12%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
             N+S+     +       +    E  +L YA   I ERA+P L DGFKPV RRI+H+M 
Sbjct: 8   EQNLSSETPQGDSQETITRISGMYETWFLDYASYVILERAVPALEDGFKPVQRRIMHSMD 67

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI- 121
           E+       + K A IVG  + K HPHGD S+ D++++L Q    +  LI  QG++GNI 
Sbjct: 68  EL---EDGRYNKVANIVGNTM-KYHPHGDASIGDAIIQLGQ----KQLLIDTQGSWGNIL 119

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            GD AAA RY EAR+++ A  +L        +++ +Y+  + EPV  P KFP LLA G  
Sbjct: 120 TGDDAAAPRYIEARLSKFALDVL--FSPKVTEWQKSYDGRNDEPVHLPVKFPLLLAQGAE 177

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG++T I  HN  E+ +A++  ++     +         PDFPT GI+         
Sbjct: 178 GIAVGLSTKILPHNFNELIDASVLYLEGKPFELY--------PDFPTAGIMD------AA 223

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  G  G R+R R  + +  R    +V+TEIP+    S LI+ I +     +I +L+ +
Sbjct: 224 TYNDGMRGGRIRVRARIAQ--RDKATLVITEIPFGTTTSSLIDSILKANEKGKIKILK-V 280

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            D +A+DV I+     + + PD  +++++  +D E        V+   + P  + +  IL
Sbjct: 281 DDNTAKDVEIL-VHLPKGISPDKTIDALYAFTDCELSISPLCCVIEDNK-PHFIGVSDIL 338

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEI--------LKGLLIAYLNIDEIIAIIRNEDKP 413
           ++      E+L +    ++  ++++            + + I +   ++  ++     + 
Sbjct: 339 RKSTDRTVEILKKELEVKLDDLEQKWHNASLEKIFIREEMYIDFKKYNDKESLFAYLYER 398

Query: 414 KPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                 +    +T+  +D +  + +  + + + Y+ +  L  + A+ E + + L +    
Sbjct: 399 FEPFKEQLLRPITDEDIDRLTQIPMIRITRYDTYKAEENLLKIEADIEVVKNHLAN---L 455

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
            +      R +++ + K                       +   +  P   + + +  +R
Sbjct: 456 ISFTIDYFRNLQKKYGKGK---------------------ERKTQIRPFDTIEATKVVVR 494

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           +LK +               +        D I++ + DGK              +     
Sbjct: 495 NLKLYVNREEGFVGTSLKKDEYVADCSDIDDIIVFTADGKMIITKVTEKSYVGKNIVH-- 552

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
                      V  F  + T  +  +V   GN  I   S I   T  G        +E  
Sbjct: 553 -----------VGVFKKNDTRTVYNLVYRNGNDKI---SYIKRFTVTGII----RDKEYD 594

Query: 651 KLVVKVTGDHVAVVGEN 667
             +       +     N
Sbjct: 595 V-IEPHKDSQILYFSAN 610


>gi|261599193|gb|ACX85659.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/157 (45%), Positives = 109/157 (69%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I+ERA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V    
Sbjct: 64  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPLAW 123

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            +++ + EP V P+ FPNLL NG +GI+ G AT  P 
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATQFPP 160


>gi|320353625|ref|YP_004194964.1| DNA topoisomerase IV subunit A [Desulfobulbus propionicus DSM 2032]
 gi|320122127|gb|ADW17673.1| DNA topoisomerase IV subunit A [Desulfobulbus propionicus DSM 2032]
          Length = 670

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 142/585 (24%), Positives = 243/585 (41%), Gaps = 67/585 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +            L    +  +L Y    I+ERAIPD+ DG KPV RRI+     + 
Sbjct: 1   MSETTEQPRGK-----LHQLFDTNFLDYTSYVIRERAIPDVDDGLKPVQRRIL---QTLA 52

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGD 124
                 F K A +VGE + KLHPHGDQS++D+LV LA     +  LI  QGNFGNI  GD
Sbjct: 53  NMDDGRFHKVANVVGETM-KLHPHGDQSIFDALVNLA----NKGYLIDRQGNFGNIFTGD 107

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            A+A RY E R++ +A   L   ++D  +F D+Y+    EPV  P+K P LL  G  GIA
Sbjct: 108 QASAPRYIECRLSPLARETL--FNKDLTEFIDSYDGRMQEPVRLPAKIPLLLLLGAEGIA 165

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT I  HN  E+ +A +  +   E        +++ PDFP        R  I++   
Sbjct: 166 VGMATKIMPHNFGELLQAQIDYLRGQE--------FVLYPDFP--------RGGIIDVAD 209

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
              G  R+R R  +E+    S  IV+TE+PY +    LIE I +   A ++ +     ++
Sbjct: 210 YNHGNGRIRCRAKLEQ--PDSKTIVITELPYNLTTQALIESIEKAAKANKLKIAS--IND 265

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
              +   V     R +  +  +++++  +D E     ++  +    +P+ M ++ +L+  
Sbjct: 266 YTAEKVEVEIKLARGVLAEETIDALYAFTDCELSVSPSLVTIVD-NMPRQMAVEEVLRRN 324

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVS--- 419
                  L R     +  ++ +      + + I      +I      ++    V  S   
Sbjct: 325 TDRLVANLERELQIELGRLEDKWHARKLEQIFIEERLYKQIEEKTNYKEVQATVRDSLLP 384

Query: 420 -----RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                +  +T   V+ +L +++R + + +  + + EL ++  +  +I   L         
Sbjct: 385 FANELKRKITPEDVERLLEIKIRRISRYDINRQQKELRDIEKQIGQIKKHLTD---MIGF 441

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
               + E+   +            F E        +         +TV           K
Sbjct: 442 TVAYLGELAAKYGSQFPRASELRAFDE--------VDARAAALSNLTVGYHRESGFLGHK 493

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             + D         ++  +       DR+LL+  DG    +   +
Sbjct: 494 IKAED---------EAHDLDCACSEYDRLLLIFKDGLYKVIHVPD 529


>gi|291513745|emb|CBK62955.1| DNA topoisomerase IV subunit A [Alistipes shahii WAL 8301]
          Length = 954

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 144/614 (23%), Positives = 244/614 (39%), Gaps = 49/614 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+HAM    +     + K A +VG+
Sbjct: 56  LTGMYKNWFLDYASYVILERAVPHVEDGLKPVQRRILHAM---KVVDDGRYNKVANLVGQ 112

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 113 TM-QYHPHGDASIKDALVQLGQ----KDLLIDCQGNWGNILTGDEAAAGRYIEARLSKFA 167

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   ++   ++  +Y+    EPV  P KFP LLA G+ GIAVG+A+ I  HN  E+ 
Sbjct: 168 LDVV--FNKKTTEWMLSYDGRKEEPVTLPIKFPLLLAQGSDGIAVGLASKILPHNFVELI 225

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            AA+A +   +  +         PDFPTGG+   SR      Y  G  G  V+ R  + +
Sbjct: 226 NAAIAHLQGRDFQLY--------PDFPTGGMADVSR------YNDGLRGGTVKVRAKISK 271

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           + + +  I  TEIPY       I+        K    +  + D +A+ V IV    +   
Sbjct: 272 IDKRTLAI--TEIPYTTTTES-IKDSIIKANDKGKIKIRKVDDNTADKVEIV-IQVSPDE 327

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E       + +     P  + +  IL+    H + +L      R+
Sbjct: 328 SSDKTIDALYAFTDCEVSIAP-NSCVIWDEKPHFLGVSEILRRSAEHTKSLLGLELKIRL 386

Query: 381 QAIDRRVE--ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +        L+ + I       I      E+    V              +    ++ 
Sbjct: 387 GELSEAWHAASLERIFIENRLYQLIEGCKSREEAYSAVDKGLEPFKMRLRREVTLEDVQK 446

Query: 439 LRKLEEYQI-KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
           L +L+  +I + + +    E  +I+  L S +   + +        E        GR R 
Sbjct: 447 LTELKFIRISRYDSEKADNEIRQIEEDLKSTQYDLDHLTEYAVAYYERIRDKYGKGRERR 506

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           T            +   IE   + V  +     R+     +             +     
Sbjct: 507 TEL---------REFDSIEATKVAVTNAKLYVDRAEGFFGIGK------SMKDAEFVCDC 551

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
              D +++ + DG+       +      +      +   N ++ I      D     +++
Sbjct: 552 SDIDDVIVFTKDGRYVITKVSDKAFFDKNIY-YIGVFKRNDDRTIYNVLYRDGKNGAIMM 610

Query: 618 SSKGNAFIVEESEI 631
                  I  + E 
Sbjct: 611 KRCAIKGITRDKEY 624


>gi|260100989|gb|ACX31659.1| DNA gyrase subunit A [Salmonella enterica]
          Length = 132

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/132 (57%), Positives = 105/132 (79%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNE 160
           ++ VDF D ++ 
Sbjct: 121 KETVDFVDNHDG 132


>gi|161511949|emb|CAP45394.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 151

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/145 (59%), Positives = 115/145 (79%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATS 190
            V P+K PNLL NG+SGIAVGMAT 
Sbjct: 121 DVMPTKIPNLLVNGSSGIAVGMATK 145


>gi|296253506|gb|ADH04214.1| GyrA [Gallibacterium anatis]
 gi|296253516|gb|ADH04219.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/144 (59%), Positives = 110/144 (76%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR++ AM+  G D+   ++KSARIVG+VIGK HPHGD +VY +LVR+AQPF  R
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDYAVYATLVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL+ GQGNFG+IDGDS AA RYTEARMTQ+A  +L  +D++ VD++  Y+  +  P V 
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 169 PSKFPNLLANGTSGIAVGMATSIP 192
           P+K P LL NG+SGIAVGMAT + 
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKLA 144


>gi|281426196|ref|ZP_06257109.1| DNA topoisomerase 4 subunit A [Prevotella oris F0302]
 gi|281399772|gb|EFB30603.1| DNA topoisomerase 4 subunit A [Prevotella oris F0302]
          Length = 978

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 136/596 (22%), Positives = 237/596 (39%), Gaps = 42/596 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 114 LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 170

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV++ Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 171 TM-QFHPHGDASIGDALVQMGQ----KDLLIDCQGNWGNILTGDRAAAPRYIEARLSKFA 225

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    D++ +Y+  + EP+  P KFP LLA G  GIAVG+++ +  HN+ EIC
Sbjct: 226 LDVV--FNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEIC 283

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +   +  +         PDFPTGG I  S+      Y  G+ G  ++ R  +  
Sbjct: 284 DAAIKYLRGEDFQLY--------PDFPTGGAIDVSK------YNDGQRGGVLKVRAKI-- 327

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  +V+ EIP+    + LI+ I + I   +I   + + D +A +V I        +
Sbjct: 328 EKLDNKTLVIREIPFSKTTTTLIDSILKAIDKGKIK-AKRVDDNTAAEVEIQ-VHLAPGV 385

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  M++++  SD E     N  V+   + P  + +  +L+  +     +L +    R 
Sbjct: 386 SSDKTMDALYAFSDCEINISPNCCVIEDNK-PCFLTVSDVLRHGVDRTMGLLRKELQIRR 444

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             +  ++       I                                  A ++L+L   +
Sbjct: 445 GELLEQLFFASLERIFIEQRIYKEKKFEQAADMNE------------AVAFVDLKLTPFK 492

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                ++  +    L E +    L  +  +    IA    EV EI      +      + 
Sbjct: 493 PDFIREVTRDDILRLMEIKMQRILKFNKDKADELIARIKAEVAEIEHDLEHMTDVTINWF 552

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              +           E      + S +    + K +               +   +    
Sbjct: 553 MFIKNKYGNEHPRHTEIRSFDTIDSAKVVEANQKLYINRQEGFIGTGLKKDEFVCNCSDI 612

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           D I++   +GK   +   + +        +Q+    +        +         +
Sbjct: 613 DDIIIFYKNGKYKIIKVADKIFVGKGIIWLQVFKKNDKRTIYNVVYKDGREGYYYM 668


>gi|299141868|ref|ZP_07035003.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunitA)
           [Prevotella oris C735]
 gi|298576719|gb|EFI48590.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunitA)
           [Prevotella oris C735]
          Length = 903

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 136/596 (22%), Positives = 237/596 (39%), Gaps = 42/596 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 39  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 95

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV++ Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 96  TM-QFHPHGDASIGDALVQMGQ----KDLLIDCQGNWGNILTGDRAAAPRYIEARLSKFA 150

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    D++ +Y+  + EP+  P KFP LLA G  GIAVG+++ +  HN+ EIC
Sbjct: 151 LDVV--FNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEIC 208

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +   +  +         PDFPTGG I  S+      Y  G+ G  ++ R  +  
Sbjct: 209 DAAIKYLRGEDFQLY--------PDFPTGGAIDVSK------YNDGQRGGVLKVRAKI-- 252

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  +V+ EIP+    + LI+ I + I   +I   + + D +A +V I        +
Sbjct: 253 EKLDNKTLVIREIPFSKTTTTLIDSILKAIDKGKIK-AKRVDDNTAAEVEIQ-VHLAPGV 310

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  M++++  SD E     N  V+   + P  + +  +L+  +     +L +    R 
Sbjct: 311 SSDKTMDALYAFSDCEINISPNCCVIEDNK-PCFLTVSDVLRHGVDRTMGLLRKELQIRR 369

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             +  ++       I                                  A ++L+L   +
Sbjct: 370 GELLEQLFFASLERIFIEQRIYKEKKFEQAADMNE------------AVAFVDLKLTPFK 417

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                ++  +    L E +    L  +  +    IA    EV EI      +      + 
Sbjct: 418 PDFIREVTRDDILRLMEIKMQRILKFNKDKADELIARIKAEVAEIEHDLEHMTDVTINWF 477

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              +           E      + S +    + K +               +   +    
Sbjct: 478 MFIKNKYGNEHPRHTEIRSFDTIDSAKVVEANQKLYINRQEGFIGTGLKKDEFVCNCSDI 537

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           D I++   +GK   +   + +        +Q+    +        +         +
Sbjct: 538 DDIIIFYKNGKYKIIKVADKIFVGKGIIWLQVFKKNDKRTIYNVVYKDGREGYYYM 593


>gi|260100991|gb|ACX31660.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 131

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 75/131 (57%), Positives = 105/131 (80%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  GDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 150 DAVDFRDTYNE 160
           + VDF D ++ 
Sbjct: 121 ETVDFVDNHDG 131


>gi|327179192|gb|AEA30139.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 150

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/149 (57%), Positives = 118/149 (79%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICE 201
           PNLL NG+SGIAVGMAT+IP HN+ E+ +
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHNLTEVIQ 149


>gi|288924619|ref|ZP_06418556.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella buccae D17]
 gi|288338406|gb|EFC76755.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella buccae D17]
          Length = 912

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 142/589 (24%), Positives = 237/589 (40%), Gaps = 53/589 (8%)

Query: 2   GVDNISNSNTLVEENVKAVS---------LRFALEERYLAYALSTIKERAIPDLRDGFKP 52
           G +N          +   V+         L    +  +L YA   I ERA+P + DG KP
Sbjct: 15  GEENNEEVTEDTHSDYNPVNRFDASAVHHLSGMYQNWFLDYASYVILERAVPHIEDGLKP 74

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI+H+M  M       + K A IVG  + + HPHGD S+ D+LV++ Q    +  LI
Sbjct: 75  VQRRILHSMKRM---DDGRYNKVANIVGHTM-QFHPHGDASIGDALVQMGQ----KDLLI 126

Query: 113 SGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
             QGN+GNI  GD AAA RY EAR+++ A  ++   +    D++ +Y+  + EP+  P+K
Sbjct: 127 DCQGNWGNILTGDRAAAPRYIEARLSKFALDVV--FNPKTTDWQLSYDGRNKEPITLPAK 184

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FP LLA G  GIAVG+++ +  HN+ EIC+AA+  +   E  I         PDFPTGG 
Sbjct: 185 FPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAIKYLHGEEFRIY--------PDFPTGGA 236

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           I  S+      Y  G+ G  ++ R  +      +  + V EIPY    + LI+ I + + 
Sbjct: 237 IDVSK------YNDGQRGGALKVRAKI--EKVDNKTLAVREIPYSKTTATLIDSITKAVE 288

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
             +I     I D +A +V I+       +  D  M++++  SD E     N  V+   + 
Sbjct: 289 KGKIK-ARKIEDNTAAEVEIL-IHLAPGVSSDKTMDALYAFSDCEINISPNCCVIEDNK- 345

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P  + +  +L+  +     +L +    R   +  ++       I                
Sbjct: 346 PGFLTVSDVLRHSVDRTMGLLRKELQIRRNELLEQLFFASLERIFIEERIYKERKFETAK 405

Query: 412 KPKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                +      LT  + + I  +    + +L E +++               L  +  +
Sbjct: 406 TMDEAIAFVDEKLTPFKPNFIREVTRDDILRLMEIKMQ-------------RILKFNKDK 452

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               IA    EV EI      +      + E  +           E      + +     
Sbjct: 453 ADELIAKIKAEVAEIDKDLAHMTDVTVNWFEFIKNKYGKEHPRRTEIRNFDTIEATTVVE 512

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + K +               +   +    D I++   DGK   +   +
Sbjct: 513 ANQKLYINRQEGFVGTGLKKDEFVCNCSDLDDIIIFYKDGKFKVVRVAD 561


>gi|1296999|emb|CAA64976.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 148

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 111/148 (75%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM E G      ++KSAR VG+ +GK HPHGD ++YD+LVR+AQPF 
Sbjct: 1   RDGLKPVHRRILYAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDGAIYDALVRMAQPFS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
               L+ GQGNFG++DGD+AAA RYTE RM + A  +L  +D+D VDF+D Y+ +D EP 
Sbjct: 61  MGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPT 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P++FPN+L NG  GIAVGMAT+IP H
Sbjct: 121 VLPARFPNMLVNGAGGIAVGMATNIPPH 148


>gi|86133356|ref|ZP_01051938.1| DNA topoisomerase IV subunit A [Polaribacter sp. MED152]
 gi|85820219|gb|EAQ41366.1| DNA topoisomerase IV subunit A [Polaribacter sp. MED152]
          Length = 912

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 130/536 (24%), Positives = 243/536 (45%), Gaps = 45/536 (8%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           SN+++  EE +  V      +E +L YA   I ERA+P L DG KPV RRI+H+M ++  
Sbjct: 19  SNTDSPQEETITKV--TGMYKEWFLDYASYVILERAVPSLEDGLKPVQRRIMHSMKDL-- 74

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDS 125
                + K A IVG  + + HPHGD S+ D++V++ Q    +  LI  QGN+GNI  GD 
Sbjct: 75  -DDGRYNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KELLIDMQGNWGNILTGDR 128

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RY EAR+++ A  ++   +    +++ +Y+    EP+  P KFP LLA G  GIAV
Sbjct: 129 AAASRYIEARLSKFALDVV--FNPKTTEWKLSYDGRRKEPIDLPVKFPLLLAQGAEGIAV 186

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G++T I  HN  E+ +A++  +      +         PDF TGGI   +      +Y  
Sbjct: 187 GLSTKILPHNFNELIDASIKYLKGRSFKLV--------PDFLTGGIADFT------NYND 232

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+ G +VR R  + ++ +    +V+TEIP+    S LI+ I +    K    ++ I D +
Sbjct: 233 GKRGGKVRIRAKISQLDK--KTLVITEIPFSTTTSSLIDSILKA-NDKGKIKIKKIEDNT 289

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           A +V I+      ++ PD  +++++  ++ ET     +        P    +  +LK   
Sbjct: 290 AAEVEIL-VHLPPNVSPDKSIDALYAFTNCETSISP-LACTIKDNTPVFTGVSDMLKHST 347

Query: 366 AHRREVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIR--------NEDKPKP 415
               E+L R    ++  ++ +      + + I      +I             ++     
Sbjct: 348 DLTVELLKRELEIQLNELEEQWHFSSLERIFIENRIYRDIEEEETWEGVIEAIDKGLKPH 407

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           +   + ++T + +  +  +R++ + K +  + K  +++L  +   +   L +        
Sbjct: 408 IKHLKRAITVDDITRLTEIRIKKISKFDIDKAKQFIESLEEKIAGVKHHLAN---LIEFA 464

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
               + +K+ + K  +       F ++  +  A     +        + ++     
Sbjct: 465 IAYFKRLKDTYGKGKERKTEIRIFDDIVASKVAMNNAKLYVNRAEGFIGTSLKRDE 520


>gi|261599197|gb|ACX85661.1| ParC [Streptococcus parasanguinis]
          Length = 160

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 71/156 (45%), Positives = 110/156 (70%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KSA+ VG ++G  HPHGD S+YD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V +  
Sbjct: 64  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAW 123

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            +++ + EP V P+ FPNLL NG +GI+ G AT   
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDNS 159


>gi|108937138|gb|ABG23381.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
 gi|108937142|gb|ABG23383.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/141 (56%), Positives = 111/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|91217686|ref|ZP_01254643.1| DNA topoisomerase IV subunit A [Psychroflexus torquis ATCC 700755]
 gi|91184190|gb|EAS70576.1| DNA topoisomerase IV subunit A [Psychroflexus torquis ATCC 700755]
          Length = 863

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 161/754 (21%), Positives = 295/754 (39%), Gaps = 106/754 (14%)

Query: 6   ISNSNTLVEENVKA---------VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           +S+   L  E+ +          V +    +E +L YA   I ERA+P + DGFKPVHRR
Sbjct: 1   MSDDLDLNPESQEPFDPTAKDESVKVTGMFQEWFLDYASYVILERAVPAIEDGFKPVHRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I+H+M ++       + K A IVG  + + HPHGD S+ D++V++ Q    +  LI  QG
Sbjct: 61  ILHSMKDL---DDGRYTKVANIVGHTM-QYHPHGDASIGDAIVQIGQ----KDILIDTQG 112

Query: 117 NFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           N+GNI  GD AAA RY EAR+++ A  ++   +    +++ +Y+    EPV  P KFP +
Sbjct: 113 NWGNILTGDRAAASRYIEARLSKFALEVV--FNPKTTEWQISYDGRKQEPVNLPVKFPMV 170

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           LA G  GIAVG++T I  HN  E+ +A++  ++           + I PDF TGGI   S
Sbjct: 171 LAQGAEGIAVGLSTKILPHNFIELIDASIKHLEGK--------RFTIFPDFATGGIADVS 222

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
                 +Y  G  G ++R R  +E   +    +V+ EIPY    S LI+ I +    K  
Sbjct: 223 ------NYNDGLRGGKIRVRATIEVKDKNL--LVINEIPYSTNTSTLIDSILKA-NDKGK 273

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             ++ I D ++ DV I+      ++ PD  ++++F  ++ E        V+   + P  +
Sbjct: 274 IKIKKIEDNTSSDVEIL-VHLPNNISPDKTIDALFAFTNCEVSISPLSCVIIDDK-PHFL 331

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIR----- 408
            +  +L+    +  E+L      ++  ++ +     L+ + I      +I          
Sbjct: 332 GMSELLRMSTENTVELLKTELEIKLGELEEQWHFASLEKIFIEKRIYRDIEEEETWDGVI 391

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           +          +    +   D I  L    ++++ ++ +      + A +  I+++    
Sbjct: 392 DAIDRGLQPHIKHLKRDITRDDISRLTEIRIKRISKFDLDKADQKIEALEADIEAVKQDL 451

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
               +      + +KE + K  +   R   F ++  +        +        + ++  
Sbjct: 452 DHLIDYSINYFKMLKEKYGKGKERKTRIQLFEDIEASKVVIRNTKLYVNRIEGFIGTS-- 509

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
                                  +        D I+  + DG                  
Sbjct: 510 -------------------MKKDEYVTDCSDIDDIICFTEDGTMMVSKV--EGKTFIGKN 548

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANT-RKGKTF 641
            + + I    ++  +   +Y          K   V+S     I  +        + G   
Sbjct: 549 ILYVGIFKKKDKRTIYNLIYKDGKAGFSHMKRFAVTS-----ITRDKAYSMGNDKPGTKV 603

Query: 642 L----KVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSID--QIPEMSRG-KG------- 686
           L      + E ++  V            +   K L F ID   +    R  KG       
Sbjct: 604 LYFSCNPNGEAELVTVFLRQ--------KKGLKRLKFDIDFSDLAIKGRNVKGNLVSKMP 655

Query: 687 VRLQSYKDGGISDVICFKI--CEGLTWIDSAGRS 718
           ++    K+ G+S +   KI   E +  ++   R 
Sbjct: 656 IKSVDLKEEGVSTLKPRKIWFDEAVRRLNVDERG 689


>gi|315607502|ref|ZP_07882497.1| DNA topoisomerase 4 subunit A [Prevotella buccae ATCC 33574]
 gi|315250685|gb|EFU30679.1| DNA topoisomerase 4 subunit A [Prevotella buccae ATCC 33574]
          Length = 912

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 143/589 (24%), Positives = 237/589 (40%), Gaps = 53/589 (8%)

Query: 2   GVDNISNSNTLVEENVKAVS---------LRFALEERYLAYALSTIKERAIPDLRDGFKP 52
           G +N          +   V+         L    +  +L YA   I ERA+P + DG KP
Sbjct: 15  GEENNEEVTEDTHSDYNPVNRFDASAVHHLSGMYQNWFLDYASYVILERAVPHIEDGLKP 74

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI+H+M  M       + K A IVG  + + HPHGD S+ D+LV++ Q    +  LI
Sbjct: 75  VQRRILHSMKRM---DDGRYNKVANIVGHTM-QFHPHGDASIGDALVQMGQ----KDLLI 126

Query: 113 SGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
             QGN+GNI  GD AAA RY EAR+++ A  ++   +    D++ +Y+  + EP+  P+K
Sbjct: 127 DCQGNWGNILTGDRAAAPRYIEARLSKFALDVV--FNPKTTDWQLSYDGRNKEPITLPAK 184

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FP LLA G  GIAVG+++ +  HN+ EIC+AA+  +   E  I         PDFPTGG 
Sbjct: 185 FPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAIKYLHGEEFRIY--------PDFPTGGA 236

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           I  S+      Y  G+ G  ++ R  +      +  + V EIPY    + LI+ I + + 
Sbjct: 237 IDVSK------YNDGQRGGALKVRAKI--EKVDNKTLAVREIPYSKTTATLIDSITKAVE 288

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
             +I     I D +A +V I+       +  D  M++++  SD E     N  V+   + 
Sbjct: 289 KGKIK-ARKIEDNTAAEVEIL-IHLAPGVSSDKTMDALYAFSDCEINISPNCCVIEDNK- 345

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P  + +  +L+  +     +L +    R   +  ++       I                
Sbjct: 346 PGFLTVSDVLRHSVDRTMGLLRKELQIRRNELLEQLFFASLERIFIEERIYKERKFETAK 405

Query: 412 KPKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                +      LT  + D I  +    + +L E +++               L  +  +
Sbjct: 406 TMDEAIAFVDEKLTPFKPDFIREVTRDDILRLMEIKMQ-------------RILKFNKDK 452

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               IA    EV EI      +      + E  +           E      + +     
Sbjct: 453 ADELIAKIKAEVAEIDKDLAHMTDVTVNWFEFIKNKYGKEHPRRTEIRNFDTIEATTVVE 512

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + K +               +   +    D I++   DGK   +   +
Sbjct: 513 ANQKLYINRQEGFVGTGLKKDEFVCNCSDLDDIIIFYKDGKFKVVRVAD 561


>gi|256483424|gb|ACU81114.1| DNA gyrase subunit A [Bacillus sp. LL3]
          Length = 230

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 117/228 (51%), Positives = 164/228 (71%), Gaps = 1/228 (0%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +
Sbjct: 1   GDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITK 60

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +N
Sbjct: 61  DTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSEN 120

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEI+I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+
Sbjct: 121 PEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERII 179

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   V+    
Sbjct: 180 VTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIEIP 227


>gi|282860360|ref|ZP_06269428.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella bivia
           JCVIHMP010]
 gi|282586858|gb|EFB92095.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella bivia
           JCVIHMP010]
          Length = 917

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 141/613 (23%), Positives = 254/613 (41%), Gaps = 49/613 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV++ Q    +Y LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQMGQ----KYLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC
Sbjct: 152 LETV--FNPKTTEWQASYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            AA++ +   +        + I PDFPTGG I  S+      Y  G+ G  ++ R  +  
Sbjct: 210 SAAISYLKGKD--------FSIYPDFPTGGSIDVSK------YNDGQRGGALKVRAKI-- 253

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  +V+ E+P+    S L E I + I   +I  +  + D +A +V I L       
Sbjct: 254 EKLDNKTLVIREVPFTKTASSLQESITKAIEKGKIK-VRKVEDMTASEVEIQL-HLTPGT 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P  + +  +LK  + H +++L      R 
Sbjct: 312 SSDKTIDALYAFTDCEINISPNCCVIEDNK-PGFLTVSDVLKYSVNHTKDLLQLELEIRK 370

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             ++ ++       I                    V++             ++ +L   +
Sbjct: 371 HELEEQLFYNSLERIFIEERIYKERKFETAKDIDEVVL------------FVDSKLEPFK 418

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                ++  +    L E +    L  +  +    IA    E+ EI    +++ R    + 
Sbjct: 419 NTFIREVTRDDIIRLLEIKMQRILKFNKDKADELIAKIKAEIAEIDKDLSEMVRVTIEWF 478

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           +  +         + E +    +I+ +    + K +               +   +    
Sbjct: 479 KHLKEKYGKDHPRLTEIKSFDTIIAAKVVDANEKLYIDRQGGFIGTGLKKAEFVQNCSDL 538

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D I++   DGK   +   + +    +   +Q +   N  + I      D        ++ 
Sbjct: 539 DDIIIFYRDGKYKIIRIADKVFVGKNVLHLQ-VFKKNDKRTIYNVVYKDGE------TNI 591

Query: 621 GNAFIVEESEIIA 633
                   + +  
Sbjct: 592 HYIKRFNVTSMTR 604


>gi|46445985|ref|YP_007350.1| DNA topoisomerase IV subunit A [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399626|emb|CAF23075.1| putative DNA gyrase (topoisomerase) chain A [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 633

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 136/610 (22%), Positives = 242/610 (39%), Gaps = 68/610 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            ++  ++  Y+ YA   I +RAIP++ DG KPV RRI++ +    L       K A + G
Sbjct: 3   DIKQLMQRHYIKYASYVILDRAIPNVIDGLKPVQRRILYTLW---LMHDGKLHKVANVAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
           + +  LHPHGD  + ++L+ +A     +  L+  QGNFGN+  GD AAA RY E R+T +
Sbjct: 60  QTMA-LHPHGDAPITEALINIA----NKGYLLDQQGNFGNLFTGDPAAAARYIETRLTPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+  L   + D      +Y+    EP   P+K P +L  G  GIAVGM+T I  HN  E+
Sbjct: 115 AKETL--FNADLTSTIPSYDGRHQEPTCLPAKIPVVLLQGADGIAVGMSTHIFPHNFLEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A        I +   + I PDFPTGGI+  S       Y  G+G  R+RA+  V 
Sbjct: 173 LEAEIA--------ILEGKPFSILPDFPTGGIMDASD------YNKGKGKVRLRAKIEVR 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       +V+TEI Y      LI  I E     +I +  D  ++   +   +     R 
Sbjct: 219 DAK----SLVITEICYGTTTESLIRSIDEAAKKGKIKI--DAINDYTAEKVEIEIKLPRG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
                L+E+++  ++ +        V+     P    +D IL+      +E L R     
Sbjct: 273 QYAQDLLEALYAYTECQVTLHSQ-IVVIKDNYPWETDVDSILRLHTEKLQEYLQRELELE 331

Query: 380 MQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL--------TENQVD 429
              ++ ++     + + I       I  +   E+    +  S            TE   +
Sbjct: 332 RDHLNEKIFEKTLEQIFIENRLYKRIEDLTSYEEVHVTIAASLIPFHSQLLRIPTEQDRE 391

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +L++ +R + + +  + + E+ +   +  ++       K   N I   IR +  +  K 
Sbjct: 392 RLLSIPIRRITRFDLAKNQEEILSHQEQLTRV------EKDLKNIIKVAIRYLNSLIKKF 445

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
               +R+T    + + D   ++                       +   D +        
Sbjct: 446 ASEHKRKTEIQVIQQVDTRAME-------------------TRQITVCFDPTTGFIGTKV 486

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           +    +     D++L++  DG    +           G  +   + +   + I+     D
Sbjct: 487 TSNYTIECTNFDKLLVIFKDGTYQIINIPEKQYVHHKGNKVV-YVGIADKKTIINVVYRD 545

Query: 610 STCKLLVVSS 619
                +    
Sbjct: 546 PETHYVYAKR 555


>gi|260100980|gb|ACX31655.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Panama]
          Length = 128

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 75/128 (58%), Positives = 102/128 (79%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +
Sbjct: 61  PHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADL 120

Query: 148 DEDAVDFR 155
           +++ VDF 
Sbjct: 121 EKETVDFV 128


>gi|108937140|gb|ABG23382.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
 gi|116582927|gb|ABK00081.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 80/141 (56%), Positives = 111/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|326799067|ref|YP_004316886.1| DNA topoisomerase (ATP-hydrolyzing) [Sphingobacterium sp. 21]
 gi|326549831|gb|ADZ78216.1| DNA topoisomerase (ATP-hydrolyzing) [Sphingobacterium sp. 21]
          Length = 902

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 165/770 (21%), Positives = 302/770 (39%), Gaps = 107/770 (13%)

Query: 1   MGVDNISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           M  +  +N  +   +      + + +    E  +L YA   I +RA+P + DG KPV RR
Sbjct: 1   MSEETDNNELSGNNDEALSHNQTIPISGLYENWFLDYASYVILDRAVPHINDGLKPVQRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I+H++ EM       F K+A ++G  + K HPHGD S+ D++V++ Q    +  LI  QG
Sbjct: 61  ILHSLKEM---DDGRFNKAANVIGNTM-KYHPHGDASIGDAMVQIGQ----KNLLIDCQG 112

Query: 117 NFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           N+G+   GDSAAA RY E R+++ A  ++   + D  +++ +Y+  + EPV  P KFP L
Sbjct: 113 NWGDPTTGDSAAAPRYIEGRLSKFANDVV--FNPDTTEWQLSYDGRNREPVTLPVKFPLL 170

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           LA G  GIAVG+AT I  HN  E+ + ++ ++     ++         PDFPTGG+   S
Sbjct: 171 LAQGAEGIAVGLATKIMPHNFVELLDGSIEVLRGGRPNLV--------PDFPTGGLADVS 222

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
                 +Y  G  G +V+ R  +EE  + +  I  TEIPY      LI+ +      K  
Sbjct: 223 ------AYNEGMRGGKVKVRARIEERDKKTLAI--TEIPYGTTTGGLIDSVI-AANDKGK 273

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             ++ I D +A  V IV       + PD+ +++++  +D E     N  V+   + P  M
Sbjct: 274 IKIKKIEDNTAATVEIV-VHLAPGISPDVTIDALYAFTDCEVSISPNTCVIRDDK-PHFM 331

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID------------EI 403
            ++ +L E   H + +L +    R+  +  ++     L I                  EI
Sbjct: 332 SVNDVLIENTKHTKGLLKQELEIRLNELLEKIFFSSLLKIFIQEGMYKHPDYENAGNFEI 391

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           +  + N             +       +++  + S+ + +  +   ++  L  E +++  
Sbjct: 392 VVDVLNRLFTPFFDRFYREILPEDYKKLIDKPMSSITRFDVKKADEQMKALEDEIKEVKY 451

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
              + K   +      +++K+ + K      RRT      +                  V
Sbjct: 452 ---NLKHLTDYAIAWFQKLKDKYGK---GRERRTEIRIFEK------------------V 487

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
            +++  + ++K +               +        D I+    +G        + +  
Sbjct: 488 EASQVALANVKLYVNRADGFVGTGLKKDEYVGDCSDIDDIITFLENGTCLVTKVQDKVFV 547

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI------VEESEI-IANTR 636
                 +   +    ++  V   +Y         +               + E  +    
Sbjct: 548 GKDIIHV--GVFKKGDERTVYNMIYRDAK-----TGISYVKRFSILGVTRDKEYDLTKGS 600

Query: 637 KGKTFL----KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRG-KG--- 686
           KG   L      + E ++  V            + RK L F +D  +I    R  +G   
Sbjct: 601 KGSKVLYFTANPNGEAEIVNVQLKPH------SKLRK-LQFDLDFAEIAIKGRASQGNIV 653

Query: 687 ----VRLQSYKDGGISDVICFKI--CEGLTWIDSAGRSYNRSENDLLGWL 730
               ++    K  G+S +   KI   E L  ++  GR     E D    +
Sbjct: 654 SKYPIKKIILKSKGVSTLAGRKIWFDEVLNRLNVDGRGKYLGEFDGDDRI 703


>gi|282880747|ref|ZP_06289446.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella timonensis CRIS
           5C-B1]
 gi|281305379|gb|EFA97440.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella timonensis CRIS
           5C-B1]
          Length = 906

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 138/614 (22%), Positives = 244/614 (39%), Gaps = 51/614 (8%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV++ Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQMGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    D++ +Y+  + EP+  P+KFP LL  G  GIAVG+++ I  HN+ EIC
Sbjct: 152 LDVV--FNPKTTDWQLSYDGRNKEPITLPAKFPLLLTQGAEGIAVGLSSKILPHNLNEIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +            + + PDFPTGG I   +      Y  G+ G  ++ R  +  
Sbjct: 210 QAAIHYLKG--------EPFTLYPDFPTGGSIDVEK------YNDGQRGGTLKVRAKI-- 253

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  +V+ EIP+    + LI+ I + I   +I     + D +A +V I     +  +
Sbjct: 254 EKLDNKTLVIKEIPFSKTTTTLIDSILKAIDKGKIK-ARKVDDNTAAEVEIQ-VHLSPGI 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  SD E     N  V+   + P  + +  +L+  +     +L +    R 
Sbjct: 312 SSDKTIDALYAFSDCEINISPNCCVIEDNK-PVFLTVSDVLRHSVDSTMGLLRKELEIRR 370

Query: 381 QAIDRRVEILKGLLIAY-LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
             +  ++       I     I +       +D    V      L   +   I  +    +
Sbjct: 371 NELLEQLFFASLEKIFIEERIYKDKKFEEAKDIDAAVAHVDDRLEPFKPHFIREVTRDDI 430

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            +L E ++                L  +  +  + I     E+KEI      +      +
Sbjct: 431 LRLLEIKM-------------HRILKFNKDKANDFIVRTKAEIKEIDHDLAHMTDVTINW 477

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            E  +         + E      + + +    + K +               +   +   
Sbjct: 478 FEFIQTKYGKEHPRLTEIRSFDTIEATKVVEANEKLYINRQEGFVGTGLKKDEFVCNCSD 537

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
            D I++   DGK   +   + +    +   +Q+    +         VY      +    
Sbjct: 538 IDDIIIFYRDGKYKIIRVADKIFVGKNVIHVQVFKKNDKRTTYN--VVYKDGKSGIYF-- 593

Query: 620 KGNAFIVEESEIIA 633
                    +    
Sbjct: 594 ---IKRFNVTNFTR 604


>gi|260100986|gb|ACX31658.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 131

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 75/131 (57%), Positives = 104/131 (79%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  GDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 150 DAVDFRDTYNE 160
           + VDF D ++ 
Sbjct: 121 ETVDFVDNHDG 131


>gi|295394226|gb|ADG03724.1| DNA topoisomerase IV subunit A [Streptococcus mutans]
          Length = 151

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 72/151 (47%), Positives = 110/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KSA+ VG V+G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNVMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  LI   GN G++DGD  AA RYTEAR++++A+ +LQ +D++ V +   
Sbjct: 61  MVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEARLSEIADYLLQDIDKNTVAWAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|1296997|emb|CAA64975.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 148

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 85/148 (57%), Positives = 110/148 (74%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM E G      ++KSAR VG+ +GK HPHGD ++Y +LVR+AQPF 
Sbjct: 1   RDGLKPVHRRILYAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDGAIYGALVRMAQPFS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
               L+ GQGNFG++DGD+AAA RYTE RM + A  +L  +D+D VDF+D Y+ +D EP 
Sbjct: 61  MGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKPAPFLLADIDKDTVDFQDNYDGKDREPT 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P++FPN+L NG  GIAVGMAT+IP H
Sbjct: 121 VLPARFPNMLVNGAGGIAVGMATNIPPH 148


>gi|294054277|ref|YP_003547935.1| DNA topoisomerase (ATP-hydrolyzing) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613610|gb|ADE53765.1| DNA topoisomerase (ATP-hydrolyzing) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 691

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 129/535 (24%), Positives = 223/535 (41%), Gaps = 48/535 (8%)

Query: 7   SNSNTLVEENVKAVS-----LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            NS  L +E +  +      +     E +L YA   I ERA+P   DG KPV RRI+H+M
Sbjct: 22  ENSELLSDEEIFNLKTDTGHVDDMFSEWFLDYASYVILERAVPHANDGLKPVQRRILHSM 81

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+       + K A ++G  + K HPHGD S+ D++V+L Q    +  LI  QGN+GN 
Sbjct: 82  REL---EDGRYNKVANVIGNTM-KYHPHGDASICDAMVQLGQ----KDLLIDTQGNWGNT 133

Query: 122 -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
             GDSAAA RY EAR+++ A  ++   +    ++  +Y+  + EP   P KFP LLA G 
Sbjct: 134 FTGDSAAAARYIEARLSKFALDVV--FNPKTTNWLASYDGRNKEPETLPVKFPLLLAQGV 191

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG+A  I  HN  E+ +  ++ +      I         PDFPTGGI   S     
Sbjct: 192 EGIAVGLACKILPHNFIELIDGCISFLRKQTPEIV--------PDFPTGGIADVSE---- 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
             Y  G+ G RV+ R  +E   +    I  TE+P+    + LI+ I      K    +  
Sbjct: 240 --YNNGKRGGRVKVRARMEARKKNLLAI--TELPFGKTTTSLIDSILSA-NDKGKIKISR 294

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D +A+ V I+        DP+   ++++  +D E         +     P       +
Sbjct: 295 VEDNTADKVEIL-IYLPSGSDPETAEQALYAFTDCEVSVST-NICVIENEKPHFFAAVDL 352

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
           L       RE+L      ++  ++ +      + + I       I      E   + V  
Sbjct: 353 LYLATEKTRELLRMELEIQLAELEEKWHFSSLEKIFIEKRIYRRIEEEETWEGVIQTVDD 412

Query: 419 S--------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                    +  +T + +  +L ++++ + K + ++    + +L            + K 
Sbjct: 413 GLKPYKKLFKREITRDDILRLLEIKIKRISKYDSFKADEFIQSLEDAI---AETQKNLKY 469

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
                     ++K+ + K  +      +F +V+  +     + +          +
Sbjct: 470 LTKYTIKWFNDLKKKYGKGRERRTELASFKKVAAHEVVIANETLYVDRKEGFAGT 524


>gi|91201872|emb|CAJ74932.1| similar to DNA gyrase subunit A [Candidatus Kuenenia
           stuttgartiensis]
          Length = 858

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 158/716 (22%), Positives = 276/716 (38%), Gaps = 87/716 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFAL-EERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  + +  S+      +        +    +L YA   I ERA+P L DG KPV RRI+H
Sbjct: 1   MVNNKMFKSSPEANGVIHEALHVSEMYSNWFLEYASYVILERAVPALLDGLKPVQRRILH 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M +M       F K+A I+G  + + HPHGD ++ ++LV L Q    +  LI  QGN+G
Sbjct: 61  SMKQM---DDGRFNKAANIIGHTM-QYHPHGDAAIGEALVNLGQ----KDLLIETQGNWG 112

Query: 120 NI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           +I  GDSAAA RY EAR+++ A  +    +    +++ +Y+    EPV+ P KFP LLA 
Sbjct: 113 DISTGDSAAAPRYIEARLSKFALEV--AFNNQTTEWQLSYDGRKKEPVLLPMKFPLLLAQ 170

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GIAVG+AT I  HN  E+ EA++  +   E+++         PDFPTGG+   S  +
Sbjct: 171 GAEGIAVGLATRIMPHNFIELLEASIDTLRGKEVNLL--------PDFPTGGMADFSNYN 222

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             E  R GR    VRA+  + E       +V+  IPY    + +++ I +     +I  +
Sbjct: 223 --EGLRGGR--INVRAKIEILEKKT----LVIRSIPYTTTTANVMDSIVKANENGKIK-I 273

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           + + D +A+DV IV+     ++ PD+ +++++  +D E     N  V+   + P+ + ++
Sbjct: 274 KRVVDNTAKDVEIVVE-LPPNVSPDVTIDALYAFTDCEISISPNACVIIDEK-PRFLGVN 331

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIR-----NED 411
            ILK    H   +L R    ++  +         + + I      +I             
Sbjct: 332 EILKISAKHTVGLLKRELEIKLGELREAWHFSSLEKIFIEKRIYRDIEECETWEGVIAAI 391

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
               +   +    E   + I++L    ++++  +      + + A + +I  +    K  
Sbjct: 392 DKGLMPYKKHFQREINEEDIVSLTEIKIKRISRFDSFKANEAIKALEVEIKQVEYDLKHL 451

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
                     + + + K    GR R T                                 
Sbjct: 452 TEYAIAWFENLIKKYGK----GRERKTQIRNFETIHVAQVAQ-----------------A 490

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           + K +   +           +        D I++  +D                     Q
Sbjct: 491 NQKLYINRMDGFIGYGLRKEEYIGDCSDIDDIIVFLSDCTFMVTRVSEKAFVGKDIIHAQ 550

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII-------ANTRKGKTFL-- 642
           +     ++  ++   +Y       V            + I        +  +KG   L  
Sbjct: 551 VWKK--NDARMIYHMIYQDGKDGPV-----YVKRFAVTSITYDKSYNLSQGKKGSKVLYF 603

Query: 643 --KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRGK-GVRLQSYK 693
               +SE +   V   T           + L F  D   +    R   G RL  Y 
Sbjct: 604 SANPNSESEEVTVALSTK-------SAARKLTFDYDFAGLAVKGRASIGNRLTKYP 652


>gi|224026477|ref|ZP_03644843.1| hypothetical protein BACCOPRO_03234 [Bacteroides coprophilus DSM
           18228]
 gi|224019713|gb|EEF77711.1| hypothetical protein BACCOPRO_03234 [Bacteroides coprophilus DSM
           18228]
          Length = 877

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 149/659 (22%), Positives = 253/659 (38%), Gaps = 81/659 (12%)

Query: 1   MGVDNISNSNTLVEEN-----VKAVSLRFA---------LEERYLAYALSTIKERAIPDL 46
           M  D        + E       K V               +  +L YA   I ERA+P +
Sbjct: 1   MSEDTFDKDTDKLPEKEGHSDYKPVDQTDEAVKHQLSGMYQNWFLDYASYVILERAVPHI 60

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
            DG KPV RRI+H+M  +       + K A IVG  + + HPHGD S+ D+LV+L Q   
Sbjct: 61  NDGLKPVQRRILHSMKRL---DDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ--- 113

Query: 107 QRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
            +  LI  QGN+GNI  GDSAAA RY EAR+++ A  ++   +    +++ +Y+  + EP
Sbjct: 114 -KELLIDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FNPKTTEWQASYDGRNREP 170

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
           V  P KFP LLA G  GIAVG+++ I  HN  E+C+AA+A +   E  +         PD
Sbjct: 171 VTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAAIAYLHGEEFKLY--------PD 222

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK 285
           F TGG I  SR      Y  G  G  VR R  +      +  + ++EIPY    S LI+ 
Sbjct: 223 FQTGGSIDVSR------YNDGERGGVVRVRAKIS--KLDNKTLCISEIPYGKTTSSLIDS 274

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
           I + I   +I  +  + D +A  V I+       +  D  +++++  +D E     N  V
Sbjct: 275 ILKAIEKGKIK-IRKVDDNTARKVEIL-IHLAPGVSSDKTLDALYAFTDCEVNISPNCCV 332

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL------- 398
           +   + P  + +  +L++ + + R++L +    +       +       I          
Sbjct: 333 ID-NKKPHFLTVSDVLRKSVNNTRDLLRKELEIQKNETLETLHFASLEKIFIEERIYKDK 391

Query: 399 --NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                E + I       +        + E   + IL L    + ++ ++      + +  
Sbjct: 392 QFEQAENMDIACEHIDERLTPFYPQFVREVTKEDILRLMEIKMARILKFNKDKADELIAR 451

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
            K +I+ + N             R +K+ + K      RRT                   
Sbjct: 452 LKAEIEEIDNHLAHLTEYTIEWYRHLKDKYGKDFP---RRTEI----------------- 491

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +++ +    + K +               +   +    D +++   DGK   + 
Sbjct: 492 -RNFDTIVATKVVEANEKLYINREEGFIGTGLKKDEFICNCSDIDDVIIFYKDGKYKIVR 550

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
             +     G       +   N  + I      D                   + +I + 
Sbjct: 551 ISD-KLFVGKNILYVNIFKKNDKRTIYNVIYRDGKEGY------HYIKRFNVTSMIRDR 602


>gi|325299748|ref|YP_004259665.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
 gi|324319301|gb|ADY37192.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
          Length = 879

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 145/633 (22%), Positives = 244/633 (38%), Gaps = 67/633 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             +      L    +  +L YA   I ERA+P + DG KPV RRI+HAM  +       +
Sbjct: 28  PADKAVKYQLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHAMKRL---DDGRY 84

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRY 131
            K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY
Sbjct: 85  NKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDDAAAPRY 139

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I
Sbjct: 140 IEARLSKFALDVV--FNPKTTEWQASYDGRNREPVTLPVKFPLLLAQGVEGIAVGLSSKI 197

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN  E+C+AA+A +   E  +         PDF TGG +  SR      Y  G  G  
Sbjct: 198 LPHNFNELCDAAIAYLHGEEFHLY--------PDFQTGGAVDVSR------YNDGERGGV 243

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR R  +      +  + ++EIPY    S LI+ I + +   +I  +  + D +A+ V I
Sbjct: 244 VRVRAKIS--KIDNKTLCISEIPYGKTTSSLIDSILKAVEKGKIK-VRKVDDNTADKVEI 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +          D  +++++  +D E     N  V+   + P  + +  +L++ + H   +
Sbjct: 301 L-VHLAPGASSDKTLDALYAFTDCEVNISPNCCVIED-KKPHFLSVGTVLRKSVDHTLGL 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYL---------NIDEIIAIIRNEDKPKPVMVSRFS 422
           L R    +       +       I               E +         +        
Sbjct: 359 LRRELEIQRDETLETLHFASLEKIFIEERIYKDRGFEQAENMDAACAHIDERLTPFYPQM 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E   D IL L    + ++ ++      +N+   K  I+   N      +      R +
Sbjct: 419 VREVTKDDILRLMEIKMARILKFNKDKADENIARLKADIEETENHLAHLTDYTIAWFRRL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +        RRT                         +++ +    + K +      
Sbjct: 479 KEKYG---AQFPRRTEI------------------RNFDTIVATKVAEANEKLYINREEG 517

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
                    +   +    D +++   DGK   +   +     G       +   N  + I
Sbjct: 518 FIGTGLKKDEFVCNCSDIDDVIIFYRDGKYKVVRVQD-KLFVGKNILYVNVFKKNDKRTI 576

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
                 D                   + +I + 
Sbjct: 577 YNVIYRDGKDGY------HYIKRFNVTSMIRDR 603


>gi|311746903|ref|ZP_07720688.1| DNA topoisomerase 4 subunit A [Algoriphagus sp. PR1]
 gi|126578592|gb|EAZ82756.1| DNA topoisomerase 4 subunit A [Algoriphagus sp. PR1]
          Length = 872

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 158/743 (21%), Positives = 287/743 (38%), Gaps = 89/743 (11%)

Query: 6   ISNSNTLV---EENVKA-VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +S  N L    ++N+   V +    ++ +L YA   I ERA+P + DG KPV RRI+HAM
Sbjct: 1   MSEENDLPKNGDDNLHDTVPVSGMYKDWFLDYASYVILERAVPAIEDGLKPVQRRIMHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            EM       F K A I+G+ + + HPHGD S+ D++V L Q    +  LI  QGN+G+I
Sbjct: 61  KEM---DDGRFNKVANIIGQSM-QYHPHGDASIGDAIVNLGQ----KDLLIETQGNWGDI 112

Query: 122 -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
             GD AAA RY EAR+++ A  ++   +    +++ +Y+    EP+  P KFP LLA G 
Sbjct: 113 RTGDRAAAARYIEARLSKFALEVV--FNPQTTEWQLSYDGRKREPITLPVKFPLLLAQGV 170

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG++T I  HN  E+ E ++ ++   + ++         PDF TGG+   S     
Sbjct: 171 EGIAVGLSTKILPHNFCELIEGSIEILKGNKTNVL--------PDFLTGGLADFSE---- 218

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
             Y  G+ G +V+ R  +EE       I++ EIP+      LI+ I +    K    ++ 
Sbjct: 219 --YNGGQRGGKVKVRAKIEEEDS--KTILIKEIPFGTTTDSLIDSILKA-NDKGKIKIKK 273

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D +A+DV I        + PD+ +++++  +D E     N  V+   + P  + ++ I
Sbjct: 274 VVDNTAKDVEIA-VHLAPGISPDVTIDALYAFTDCEVSISPNACVIIDEK-PVFLDVNDI 331

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
           L       R +L +    R   +  ++     + + I      +I      ++  + +  
Sbjct: 332 LTYNTKQTRALLKKELEIRKAELMEKLLFSSLEKIFIENRIYRDIEECTTWQEVLEAIDK 391

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
                  +    I+   L  L ++   +I                      +   ++  E
Sbjct: 392 GLDPYKPDFYREIVEEDLVKLTEIRIKRI-------------SKFDSFKADELMKRLQDE 438

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           ++EV       TD   +   + E         ++   E      + ++     + K +  
Sbjct: 439 LKEVNYNLRHLTDYAIK---YYESLLTKYGKGKERKTEIRAFDTIQASVVAANNAKLYVN 495

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                        +        D I+++  DG                   +   +    
Sbjct: 496 RKDGFVGTSLKKDEFVCDCSDLDDIIVIRKDGICMVSKIQEKNFMGKDILHV--AVFRKG 553

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKV------SSE 647
           ++ +V   +Y         + +          V   +    T+  K    +      + E
Sbjct: 554 DERMVYNLIYLDGG-----TGRAMVKRFQVLAVTRDKEYNLTKGSKGSKTLYLTANSNGE 608

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRGKG--------VRLQSYKDGGI 697
            ++  V    G          ++ +F  D   I    RG G        +R    K  G+
Sbjct: 609 AEIVTVYLTQG-------AKARVKVFDFDFATIDIKGRGAGGNILTKYPIRKIQLKMEGV 661

Query: 698 SDVICFKICEGLTW--IDSAGRS 718
           S +    I        +++  R 
Sbjct: 662 STLGGLDIYYDDIVGRLNTEERG 684


>gi|116582925|gb|ABK00080.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 111/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY+++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYNTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|47834514|gb|AAT38944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 169

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 97/167 (58%), Positives = 128/167 (76%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 122

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGG 230
           AVGMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT  
Sbjct: 123 AVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA 169


>gi|294992569|gb|ADF57411.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/133 (53%), Positives = 103/133 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ V
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 153 DFRDTYNEEDSEP 165
           DF+D Y+  + EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|261880504|ref|ZP_06006931.1| DNA topoisomerase 4 subunit A [Prevotella bergensis DSM 17361]
 gi|270332844|gb|EFA43630.1| DNA topoisomerase 4 subunit A [Prevotella bergensis DSM 17361]
          Length = 916

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 149/684 (21%), Positives = 256/684 (37%), Gaps = 70/684 (10%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+PD+ DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 60  LSGMYKNWFLDYASYVILERAVPDIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 116

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 117 TM-QFHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 171

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ +  HN  E+C
Sbjct: 172 LETV--FNPKTTEWQQSYDGRNKEPVTLPVKFPLLLAQGAEGIAVGLSSKVLPHNFNELC 229

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +   E  +         PDFPTGG I  S+      Y  G+ G  VR R  +  
Sbjct: 230 DAAISYLRGKEFELY--------PDFPTGGAIDISK------YNDGQRGGTVRVRAKI-- 273

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               S  +V+ E+P+    + L E I   I   +I     + D +A DV I     +  +
Sbjct: 274 EKLDSKTLVIREVPFTKTAASLQESITRAIEKGKIK-ARRVIDMTARDVEIQ-VQLSPGI 331

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E         +  G  P  + +  +LK        +L      R 
Sbjct: 332 SSDKTIDALYAFTDCEINISP-NCCVIDGNKPAFLTISDVLKHNADRTMGLLRTELLIRK 390

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             ++  +       I                            ++  V A L+ +    +
Sbjct: 391 GELEEMLFFASLERIFIEERMYKEKKFEQAP------------SQKAVLAFLDSKFEPFK 438

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           K    +I+ +    L E +    L  +  +    +   + E+K I      +      + 
Sbjct: 439 KDLIREIREDDYLRLLEIKMQRILKYNKDKADQLMKKTMAEIKGIDHDLAHMTDVTIAWY 498

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           +  +         + E      + +      + K +               +   +    
Sbjct: 499 KHLKNTYGKDYPRLTEIRSFDTIDAATVVEANEKLYINRQDGFVGTGLKKHEFVCNCSDL 558

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D I++   DGK   +   + +    +   +Q+    +        +              
Sbjct: 559 DDIIIFYRDGKYKVMKVADKIFVGKNIIWVQVFNKNDKRTIYNAVYRDGKNGY------- 611

Query: 621 GNAFIVEESEIIANT-------RKGKTFL----KVSSEEKMKLVVKVTGDHVAVVGENRK 669
                   + +  +        + G   L      + E ++  V            + +K
Sbjct: 612 SYIKRFNVTSMTRDREYDITQGKPGSRVLYFTANPNGEAEIIKVTLDPDP------KKKK 665

Query: 670 LLIFSI---DQIPEMSR-GKGVRL 689
             IF       +    R  KG  L
Sbjct: 666 QNIFLEMDFSDVKIKGRTAKGNIL 689


>gi|198276965|ref|ZP_03209496.1| hypothetical protein BACPLE_03170 [Bacteroides plebeius DSM 17135]
 gi|198270490|gb|EDY94760.1| hypothetical protein BACPLE_03170 [Bacteroides plebeius DSM 17135]
          Length = 881

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 137/655 (20%), Positives = 243/655 (37%), Gaps = 70/655 (10%)

Query: 1   MGVDNISNSNTLV--------EENVKAVSLRFA---------LEERYLAYALSTIKERAI 43
           M  D        +          + K VS              +  +L YA   I ERA+
Sbjct: 1   MSEDTFDKDEKEMANLPEKEEHSDYKPVSTTDEAVKHQLSGMYQNWFLDYASYVILERAV 60

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRI+H+M  +       + K A IVG  + + HPHGD S+ D+LV+L Q
Sbjct: 61  PHINDGLKPVQRRILHSMKRL---DDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ 116

Query: 104 PFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
               +  LI  QGN+GNI  GDSAAA RY EAR+++ A  ++   +    +++ +Y+  +
Sbjct: 117 ----KDLLIDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FNPKTTEWQASYDGRN 170

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+AA+A +   +  +        
Sbjct: 171 REPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAAIAYLHGEDFQLY------- 223

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
            PDF TGG I  SR      Y  G  G  VR R  +      +  + ++EIPY    S L
Sbjct: 224 -PDFQTGGSIDVSR------YNDGERGGVVRVRAKIS--KIDNKTLCISEIPYGKTTSSL 274

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           I+ I + I   +I + +   D++      +L      +  D  +++++  +D E      
Sbjct: 275 IDSILKAIEKGKIKVRK--VDDNTAGKVEILVHLTPGVSSDKTLDALYAFTDCEVNISP- 331

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY-LNID 401
              +   + P  + +  +LK+ + +   +L +    +       +       I     I 
Sbjct: 332 NCCVIDNKKPHFLSVSKVLKKSVDNTLALLRKELEIQRDETLETLHFASLEKIFIEERIY 391

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           +     + +            LT      +  +           +        +     +
Sbjct: 392 KDKQFEQADSMDAACEHIDERLTPYYPQFVREVT----------KEDILRLMEIKMARIL 441

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
               +   +   ++  E+ E+    +  T+       + +  +           E     
Sbjct: 442 KFNKDKADEFIARLKAELEEIDNHLAHITEY---TIDWYQRLKEKYGKNFPRRTEIRNFD 498

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
            +++ +    + K +               +   +    D +++   DGK   +   +  
Sbjct: 499 TIVATKVAEANEKLYINREEGFIGTGLKKDEYVCNCSDIDDVIIFYKDGKYKIVRVSD-K 557

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANT 635
              G       +   N  + I      D                    + II + 
Sbjct: 558 LFVGKNILYVNVFKKNDKRTIYNVIYRDGKEGYY-------YIKRFNVTSIIRDR 605


>gi|261599199|gb|ACX85662.1| ParC [Streptococcus oralis]
          Length = 161

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 72/154 (46%), Positives = 111/154 (72%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           +RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++V
Sbjct: 7   DRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMV 66

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   ++
Sbjct: 67  RMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 126

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           + + EP V P+ FPNLL NG++GI+ G AT IP 
Sbjct: 127 DTEKEPTVLPAAFPNLLVNGSTGISAGYATEIPP 160


>gi|261599201|gb|ACX85663.1| ParC [Streptococcus mitis]
          Length = 160

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 71/153 (46%), Positives = 109/153 (71%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD++VR
Sbjct: 7   RALPDIRDGLKPVQRRILYSMNKYGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVR 66

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           ++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   +++
Sbjct: 67  MSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWNFDD 126

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            + EP V P+ FPNLL NG +GI+ G AT+IP 
Sbjct: 127 TEKEPTVLPAAFPNLLVNGATGISAGYATAIPP 159


>gi|108937144|gb|ABG23384.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/141 (56%), Positives = 111/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYDTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|189462865|ref|ZP_03011650.1| hypothetical protein BACCOP_03565 [Bacteroides coprocola DSM 17136]
 gi|189430481|gb|EDU99465.1| hypothetical protein BACCOP_03565 [Bacteroides coprocola DSM 17136]
          Length = 879

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 145/659 (22%), Positives = 253/659 (38%), Gaps = 81/659 (12%)

Query: 1   MGVD-----NISNSNTLVEENVKAVSLRFAL---------EERYLAYALSTIKERAIPDL 46
           M  D     +I +S+     + K V               +  +L YA   I ERA+P +
Sbjct: 1   MSEDIFDKNDIQSSDKEAHSDYKPVDQGDETVKHQLSGMYQNWFLDYASYVILERAVPHI 60

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
            DG KPV RRI+H+M  +       + K A IVG  + + HPHGD S+ D+LV+L Q   
Sbjct: 61  NDGLKPVQRRILHSMKRL---DDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ--- 113

Query: 107 QRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
            +  LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +    +++ +Y+  + EP
Sbjct: 114 -KDLLIDCQGNWGNILTGDDAAAPRYIEARLSKFALDVV--FNPKTTEWQASYDGRNREP 170

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
           V  P KFP LLA G  GIAVG+++ I  HN  E+C+AA+A +   E  +         PD
Sbjct: 171 VTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAAIAYLHGEEFHLY--------PD 222

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK 285
           F TGG I  SR      Y  G  G  VR R  +      +  + ++EIPY    S LI+ 
Sbjct: 223 FQTGGSIDVSR------YNDGERGGVVRVRAKIS--KIDNKTLCISEIPYGKTTSSLIDS 274

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
           I + I   +I  +  + D +A+ V I+       +  D  +++++  +D E         
Sbjct: 275 ILKAIEKGKIK-VRKVDDNTADKVEIL-VHLAPGVSSDKTLDALYAFTDCEVNISP-NCC 331

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL------- 398
           +   + P  + +  +L++ + +   +L +  + +       +       I          
Sbjct: 332 VIDNKKPHFLSVSVVLRKSVDNTLSLLRQELNIQRNETLETLHFASLEKIFIEERIYKDK 391

Query: 399 --NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                E +         +        + E   + IL L    + ++ ++      + +  
Sbjct: 392 QFEQAENMDAACEHIDERLTPFYPQFVREVTKEDILKLMEIKMARILKFNKDKADEFITK 451

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
            K  I+ + N               +KE + K+     RRT                   
Sbjct: 452 LKADIEEIDNHLAHITEYTIDWYTRIKEKYGKNFP---RRTEI----------------- 491

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +++ +    + K +               +   +    D +++   DGK   + 
Sbjct: 492 -RNFDTIVATKVAEANEKLYINREEGFIGTGLKKDEYICNCSDIDDVIIFYKDGKYKIVR 550

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
             +     G       +   N  + I     Y    +               + +I + 
Sbjct: 551 VSD-KLFVGKNILYVNIFKKNDKRTIYNVI-YRDGKEGF-----HYIKRFNVTSMIRDR 602


>gi|313204243|ref|YP_004042900.1| DNA topoisomerase iv subunit a [Paludibacter propionicigenes WB4]
 gi|312443559|gb|ADQ79915.1| DNA topoisomerase IV subunit A [Paludibacter propionicigenes WB4]
          Length = 951

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 132/595 (22%), Positives = 239/595 (40%), Gaps = 42/595 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++     L    +  +L YA   I ERA+PD+ DG KPV RRI+H+M  +       +
Sbjct: 40  ISDDAVKHHLSGMYQNWFLDYASYVILERAVPDIYDGLKPVQRRILHSMKRL---DDGRY 96

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRY 131
            K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY
Sbjct: 97  NKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRY 151

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            EAR+++ A   +   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+ + I
Sbjct: 152 IEARLSKFALETV--FNPKTTEWKSSYDGRNKEPIALPVKFPLLLAQGVEGIAVGLNSKI 209

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN  E+ +A +A +   +        +I+ PDF TGG I  SR      Y  G  G  
Sbjct: 210 LPHNFNELLDACVANLKGED--------FILYPDFQTGGSIDVSR------YNDGERGGA 255

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           V+ R  + ++   +  I  TEIP+    S+LIE I +     +I  +  + D ++ +V I
Sbjct: 256 VKIRAKIGKIDNKTLAI--TEIPFGTNTSKLIESIIKASDKGKIK-IRKVDDNTSANVEI 312

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +          D  +++++  +D E         +     P+   +  +L+    H  ++
Sbjct: 313 L-VHLLPGSSSDKTIDALYAFTDCELSISP-NCCVIHDNKPRFCGVSEMLRISCQHTMDL 370

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L      +   +  ++       I   N         +      V+V      E      
Sbjct: 371 LQAELEIQRAELQEQLFFTSLEKIFIENRIYKDKGFEDSTSQDEVIVHIDKRLEPFKKDF 430

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
               +R + + +  ++       +          +   +    I   I E+    +   D
Sbjct: 431 ----IREIVREDFIKLL-----EIKMMRITKFDSDKANETLISIQKRIDEINHHLAHLVD 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                 ++ E  +A        + E      +++++    + K +               
Sbjct: 482 Y---TISWYEGLKAKYGKDHPRLTEIRNFETIVASKVVEANEKLYVNYDEGFIGTSLRKD 538

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           +   +    D I++   DGK   +   + +    +   + +    +        +
Sbjct: 539 EFVCNCSDIDDIIIFFKDGKYKIVKVADKIFIGKNILHLDVFKKNDKRTIYNAVY 593


>gi|284803671|emb|CBJ21241.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 142

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/142 (57%), Positives = 110/142 (77%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLL 176
           +D  +    EP V PS+FP +L
Sbjct: 121 QDNSDGSKREPAVLPSRFPKML 142


>gi|219815939|gb|ACL37056.1| GyrA [Salmonella enterica]
          Length = 130

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 74/130 (56%), Positives = 102/130 (78%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+V
Sbjct: 1   EEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  
Sbjct: 61  IGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHE 120

Query: 143 ILQGVDEDAV 152
           ++  ++++ V
Sbjct: 121 LMADLEKETV 130


>gi|110638041|ref|YP_678249.1| DNA topoisomerase IV subunit A [Cytophaga hutchinsonii ATCC 33406]
 gi|110280722|gb|ABG58908.1| topoisomerase IV subunit A [Cytophaga hutchinsonii ATCC 33406]
          Length = 859

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 162/704 (23%), Positives = 271/704 (38%), Gaps = 69/704 (9%)

Query: 1   MGVD--NISNSNTLVEENVKAV-SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  D  N S+      E++  V  +    E  +L YA   I ERA+P + DG KPV RRI
Sbjct: 1   MAKDINNNSSEEQSGNEHIHDVVHVNGLYENWFLEYASYVILERAVPHINDGLKPVQRRI 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +HAM  M       F K A ++G  + + HPHGD S+ D++V + Q    +  LI  QGN
Sbjct: 61  LHAMRVM---DDGRFNKIANVIGSTM-QYHPHGDASIGDAIVNMGQ----KDLLIEPQGN 112

Query: 118 FGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           +G+I  GDSAAA RY E R+++ A  ++   +ED  +++ +Y+    EPV  P KFP LL
Sbjct: 113 WGDIRTGDSAAAPRYIEGRLSKFALDVV--FNEDTTEWQASYDGRKKEPVTLPVKFPLLL 170

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
           A G  GIAVG++T +  HN  E+ EA++A++ N +  I         PDF TGG I  S 
Sbjct: 171 AQGVEGIAVGLSTKVLPHNFVELIEASIAVLKNKKFEIF--------PDFATGGFIDVS- 221

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
                +Y  G+ G RVR R  +E++ +    +V+ +IP+    + LIE I +        
Sbjct: 222 -----NYNEGQKGSRVRVRARIEDMDK--KTLVIKDIPFGTTTTSLIESIVKA-NDTGKI 273

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            ++ + D +A+DV I         DP + +++++  ++ E+    N  V+   + P  + 
Sbjct: 274 KIKKVIDNTAKDVEIQ-VQLLPGTDPGITIDALYAFTECESSISPNACVIVDDK-PHFLS 331

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPK 414
           +  IL+       ++L +    R   +  R+     + + I      +I      ED   
Sbjct: 332 VHEILRICTRQTVDLLKQELQIRRSELLERILFSSLEKIFIENRIYRKIEECETWEDVLL 391

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD-NLLAEKEKIDSLLNSGKQQWN 473
            +        +     I    +  L +++  +I                + L   +    
Sbjct: 392 TIDKGLQPFKKQFYRTITTEDIVRLTEIKIKRISKFDSFKADELMRGYSNELKEVEHNLE 451

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            I            K    GR R T                 +    TVV +N   +   
Sbjct: 452 NIIDYSIAYYTGILKKYGKGRERKTEI------------KTFDVINATVVAANNQKLYIN 499

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           ++       L        +        D +++   DG       G  +          + 
Sbjct: 500 RAEGFIGFGLK-----KDEYICDCSDIDDVIVFRRDGICVVKKIGEKVFVGKDILYAGIF 554

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTF---LKVSSEE 648
              +    +      D      +V       +  E E   +   +  K        + E 
Sbjct: 555 RKGDDRM-VYNLISLDGASGNSMVKRFNVMGVTREKEYPLVKANKASKVLYFSANPNGEA 613

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRL 689
           +   V               K+ +F  D   I    R  +G  L
Sbjct: 614 ETVSVTLTP-------TSKAKIKVFDFDFSTIEIKGRDTQGNIL 650


>gi|317505289|ref|ZP_07963218.1| DNA topoisomerase 4 subunit A [Prevotella salivae DSM 15606]
 gi|315663592|gb|EFV03330.1| DNA topoisomerase 4 subunit A [Prevotella salivae DSM 15606]
          Length = 903

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 136/560 (24%), Positives = 235/560 (41%), Gaps = 44/560 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 39  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 95

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV++ Q    +  L+  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 96  TM-QFHPHGDASIGDALVQMGQ----KDLLVDCQGNWGNILTGDRAAAPRYIEARLSKFA 150

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    D++ +Y+  + EP+  P KFP LLA G  GIAVG+++ +  HN+ EIC
Sbjct: 151 LDVV--FNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEIC 208

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           ++A+  +   +  +         PDFPTGG I  S+      Y  G+ G  ++ R  +  
Sbjct: 209 DSAIKYLKGEDFQLY--------PDFPTGGAIDVSK------YNDGQRGGVLKVRAKI-- 252

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  +V+ EIP+    + LI+ I + I   +I   + + D +A +V I        +
Sbjct: 253 EKLDNKTLVIREIPFSKTTTTLIDSILKAIDKGKIK-AKRVDDNTAAEVEIQ-VHLAPGV 310

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  M++++  SD E     N  V+   + P  + +  +L+  +     +L +    R 
Sbjct: 311 SSDKTMDALYAFSDCEINLSPNCCVIEDNK-PVFLTVSDVLRHGVDRTMGLLRKELQIRR 369

Query: 381 QAIDRRVEILKGLLIAYLN-IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
             +  ++       I     I +     +  +    +      LT  + D I  +    +
Sbjct: 370 GELLEQLFFASLERIFIEQRIYKEKKFEQAANMDDAIAFVDQKLTPFKPDFIREVTRDDI 429

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            +L E +++               L  +  +    IA    EV EI +    +      +
Sbjct: 430 LRLMEIKMQ-------------RILKFNKDKADELIARIKAEVAEIENDLNHMTDVTINW 476

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               +           E      + S +    + K +               +   +   
Sbjct: 477 FTFIKNKYGKDHPRRTEIRSFDTIDSAKVVEANQKLYINRQEGFIGTGLKKDEFVCNCSD 536

Query: 560 TDRILLLSTDGKAYTLPAGN 579
            D I+L    GK   +   +
Sbjct: 537 IDDIILFYKTGKYKIIKVAD 556


>gi|261599191|gb|ACX85658.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 70/156 (44%), Positives = 109/156 (69%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KSA+ VG ++G  HPHGD S+YD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++ R++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V +  
Sbjct: 64  AMARMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAW 123

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            +++ + EP V P+ FPNLL NG +GI+ G AT   
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDNS 159


>gi|295394236|gb|ADG03729.1| DNA topoisomerase IV subunit A [Streptococcus salivarius]
          Length = 151

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 70/151 (46%), Positives = 108/151 (71%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V +   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|295394240|gb|ADG03731.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae]
          Length = 151

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/151 (49%), Positives = 108/151 (71%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPV RRI+++M++ G  F   F+KSA+ VG V+G  HPHGD S+YD+
Sbjct: 1   ITRRALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  LI   GN G++DGD AAA RYTEAR++++A  +LQ +D++ V F   
Sbjct: 61  MVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|260100978|gb|ACX31654.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 128

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/128 (58%), Positives = 103/128 (80%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRD 156
           ++ VDF D
Sbjct: 121 KETVDFVD 128


>gi|228473476|ref|ZP_04058229.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228275083|gb|EEK13886.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 863

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 154/658 (23%), Positives = 270/658 (41%), Gaps = 86/658 (13%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +    +  +L YA   I ERA+P L DGFKPV RRI+H+M E+       + K A IVG 
Sbjct: 22  ISGMYQNWFLDYASYVILERAVPALEDGFKPVQRRIMHSMDEL---EDGRYNKVANIVGN 78

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + K HPHGD S+ D++++L Q    +  LI  QG++GNI  GD AAA RY EAR+++ A
Sbjct: 79  TM-KYHPHGDASIGDAIIQLGQ----KELLIDTQGSWGNILTGDDAAAPRYIEARLSKFA 133

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L         ++ +Y+  + EPV  P KFP LLA G  GIAVG++T I  HN  E+ 
Sbjct: 134 LDVL--FSPKVTQWQKSYDGRNDEPVHLPVKFPLLLAQGAEGIAVGLSTKILPHNFNELI 191

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++  ++     +         PDFPT GI+  +       Y  G  G R+R R  + +
Sbjct: 192 DASVLYLEGKPFELY--------PDFPTAGIMDAT------GYSDGMRGGRIRVRARIAQ 237

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
             R    +V+TEIP+    S LI+ I +     +I +L+ + D +A +V I+     + +
Sbjct: 238 --RDKSTLVITEIPFGTTTSSLIDSILKANEKGKIKVLK-VDDNTAANVEIL-VHLPKGI 293

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
            PD  +++++  +D ET     +  +  G  P  + +  ILK+      E+L +    ++
Sbjct: 294 SPDKTIDALYAFTDCETSVSP-LCCVIEGSRPLFIGVSDILKKSTDRTVEILKKELEVKL 352

Query: 381 QAIDRRVEI--------LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--FSLTENQVDA 430
             ++++            + + I + N  +  ++     K       +    +T+  ++ 
Sbjct: 353 DDLEQKWHNASLEKIFIREEMYIDFKNYSDKESLYAYLYKRFEPFAEQLLRPITDEDLER 412

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +  + +  + + + Y+ +  L  +     ++   L +            R +++ + K  
Sbjct: 413 LTQIPMIRITRYDTYKAEENLLKIEENIAEVKDHLAN---LIAFAIDYFRNLQKKYGKGK 469

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               R+T                     P   + + +  +R+LK +              
Sbjct: 470 ---DRKTEI------------------RPFDTIEATKVVVRNLKLYVNREEGFVGTSLKK 508

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
            +        D I++ + DGK              +                V  F  + 
Sbjct: 509 DEYVADCSDIDDIIVFTADGKMIITKVTEKSYIGKNIVH-------------VGVFKKND 555

Query: 611 TCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
           T  +  +V   GN  I   S I   T  G        +E    V       V     N
Sbjct: 556 TRTVYNLVYRNGNDKI---SYIKRFTVTGII----RDKEYDV-VEPHKDSQVLYFSAN 605


>gi|189502210|ref|YP_001957927.1| DNA topoisomerase IV subunit A [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497651|gb|ACE06198.1| hypothetical protein Aasi_0825 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 832

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 155/699 (22%), Positives = 279/699 (39%), Gaps = 65/699 (9%)

Query: 6   ISNSNTLVEENVKAV-SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +S         +  +  +    +  +L YA   I ERA+P + DG KPV RRI+HAM EM
Sbjct: 1   MSEEIIPHNATIHDLTPIGDMYQSWFLDYASYVILERAVPAIEDGLKPVQRRILHAMKEM 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DG 123
                  + K A I+G+ + + HPHGD S+ ++++ L Q    +  LI  QGN+G+I  G
Sbjct: 61  ---DDGRYNKVANIIGQTM-QYHPHGDASIAEAIINLGQ----KELLIDMQGNWGDIRTG 112

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RY EAR + +A  IL         ++ +Y+    EPV FP KFP LLA G  GI
Sbjct: 113 DSAAAARYIEARPSSLAHAILY--SPQITSWQLSYDGRKKEPVTFPIKFPLLLAQGAEGI 170

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVG+AT I  HN  E+ E A+A++     ++         PDFPTGG++  S      +Y
Sbjct: 171 AVGLATKILPHNFCELIEGAIAVLQGKTTNLL--------PDFPTGGLVDCS------AY 216

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             G+ G R+R R  +E + + +  I   EIPY    + LIE I       +I  ++ + D
Sbjct: 217 NEGKRGGRIRLRARIEILDKKTLAI--REIPYGTTTNSLIESIIRAYERGKIK-IKQVID 273

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            +AEDV I+         PD++++++++ +D E         +     P  + ++ +L+ 
Sbjct: 274 NTAEDVEIL-VHLAPGQSPDVVLDALYVFTDCEIGISP-NTCVIKDEKPTFIGVNELLEY 331

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
                +++L +  + + + +  ++    L+ L I      +I      E     +     
Sbjct: 332 NTYRTKDILQQELTLQHKNLQEKILFASLEKLFIEKRIYRDIEESETWEQVLLTIDQGLE 391

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG-KQQWNQIACEIR 480
              +    AI+   L  L +++  +I         +   +     +  +     +     
Sbjct: 392 PYKKQFYRAIIEDDLVRLTEIKIKRISKYDSQKAEDALLVLEKELAEVEHHLQHLTTFTI 451

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           +  +   K    G+ R T        +A             VV +N+    + K   +  
Sbjct: 452 QYFKNLLKKYGAGKERKTEIRTFDTIEAH-----------AVVANNQKLYINRKQGFIGY 500

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
                +              D +++   DGK   +     +          +     +++
Sbjct: 501 GLKKDEL------IGDCSDLDDVIVFRKDGKCLVVKIAEKVFVGKDIIHAAVYKK--NDE 552

Query: 601 DIVTAFVYDSTCKLLVVSS--KGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVV 654
             V   +Y      +  +   +    I ++   +     G   L ++       ++  V+
Sbjct: 553 RRVYNLIYIDGKTGIARAKRFQMLGIIRDKEYDVTIGSTGSRILYLTDNPNGNAEVVTVI 612

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
                         K++ F    +    R  +G  L  Y
Sbjct: 613 LSPNSP-----ARNKVIDFDFASLQIKGRNSQGNILTKY 646


>gi|289770512|ref|ZP_06529890.1| DNA topoisomerase subunit A [Streptomyces lividans TK24]
 gi|289700711|gb|EFD68140.1| DNA topoisomerase subunit A [Streptomyces lividans TK24]
          Length = 788

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 138/569 (24%), Positives = 254/569 (44%), Gaps = 38/569 (6%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           E  ++ L+E I GPDFPTG  +V  R+ I E+YR GRG   +RA   VEE+ +   C+VV
Sbjct: 142 EELLDALIERIKGPDFPTGA-LVVGRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVV 199

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESI 329
           TE+PYQ     L +KIA+L+   ++  + D+RDE S+   + ++    R     +++ ++
Sbjct: 200 TELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNL 259

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  +D+++ F  NM  L    VP+ + LD  ++ W+ H+ EV+ RR+ FR++  + R  I
Sbjct: 260 YKHTDLQSNFGANMLALVD-GVPRTLSLDAFIRHWVNHQIEVIVRRTRFRLRKAEERAHI 318

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNLRLRSLRKLEEYQ 446
           L+GLL A   IDE+IA+IR  D  +           + E Q +AIL ++LR L  LE  +
Sbjct: 319 LRGLLKALDAIDEVIALIRRSDTVEIARGGLMDLLEIDEIQANAILEMQLRRLAALERQK 378

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I  E D L A+  + + +L S  +Q   ++ E+  + E +        R+T         
Sbjct: 379 IVREHDELQAKITEYNEILASPVRQRGIVSEELTALVEKYGD-----DRKTKLIPYEGDM 433

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAH 558
                + +I +E I V ++  G+I+  K+            +     KE D +     + 
Sbjct: 434 S---IEDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVST 490

Query: 559 TTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV---TAFVYDSTCK 613
           T   +L  +  G+ Y   A  L        G+ +  L+    ++ I        Y++   
Sbjct: 491 THHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAVPY 550

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGEN 667
           L++ +  G        +  +    G   + +       ++++     V+  D + ++ + 
Sbjct: 551 LVLATKAGLVKKTPLKDYDSPRSGGVIAINLREQADGSDDELIGAELVSAEDDLLLISKK 610

Query: 668 RKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
            + + F+     +  M R   GV+  S+++G     +      G     +    Y +  +
Sbjct: 611 AQSIRFTASDDTLRPMGRATSGVKGMSFREGDELLSMNVVRA-GTFVFTATDGGYAKRTS 669

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +  RGG+G    K     G  + +
Sbjct: 670 VDEYRVQGRGGLGIKAAKIVEDRGSLVGA 698


>gi|17887472|gb|AAL40896.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 149

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 85/149 (57%), Positives = 117/149 (78%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICE 201
           PNLL NG+SGIAVGMAT+IP H++ E+  
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHDLTEVIN 149


>gi|256819286|ref|YP_003140565.1| DNA topoisomerase IV subunit A [Capnocytophaga ochracea DSM 7271]
 gi|256580869|gb|ACU92004.1| DNA topoisomerase (ATP-hydrolyzing) [Capnocytophaga ochracea DSM
           7271]
          Length = 864

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 152/723 (21%), Positives = 291/723 (40%), Gaps = 91/723 (12%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            DN   + T   +++  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ 
Sbjct: 2   EDNTPQNTTPQGDSIIKV--TGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLK 59

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI- 121
           E+       + K A +VG  + + HPHGD S+ D++V++ Q    +  LI  QGN+GNI 
Sbjct: 60  EL---DDGRYNKVANVVGNTM-QYHPHGDASIGDAIVQIGQ----KDLLIDTQGNWGNIL 111

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            GD AAA RY EAR+++ A  ++        +++ +Y+    EP+  P KFP LLA GT 
Sbjct: 112 TGDDAAAPRYIEARLSKFALDVV--FSPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGTE 169

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG++T I  HN  E+ EA++A + N    +         PDFPT GI+  S      
Sbjct: 170 GIAVGLSTKILPHNFIELIEASIAYLKNKPFELY--------PDFPTAGIMDVS------ 215

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            Y  G  G RVR R  + ++ + + CI  TEIP+    + LI+ I +    K    ++ +
Sbjct: 216 GYNDGARGGRVRVRAKISQLDKSTLCI--TEIPFTTTTTSLIDSILKA-NEKGKIKIKKV 272

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            D +A +V I+         PD  +++++  +  ET       V+   + P  + +  +L
Sbjct: 273 DDNTAANVEIL-VHLPNGTSPDKTIDALYAFTACETAISPITCVIEDNK-PHFLTVSEVL 330

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVE--------ILKGLLIAYLNIDEIIAIIRNEDKP 413
           +        +L +     +  ++ +          I + + I + N  +  ++     + 
Sbjct: 331 RRSTDRTVSLLKQELEIELSELEMQWHSASLEKIFIREEMYIDFKNYTDRESLYEYLYQR 390

Query: 414 KPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                      +T++ +  +  + +  + + + Y+    +  + A+ E++ + L +    
Sbjct: 391 FEPFKKDLIREITDDDLAKLTQIPMIRITRFDSYKADENILKIEADIEEVKNHLAN---L 447

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
            +        +K+ + K                      ++   E      + + +  +R
Sbjct: 448 IDYAISHFERLKKTYGK---------------------GRERKTEMRVFDTIEATKVVVR 486

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           + K +               +        D +++ +  G  Y     +      +   + 
Sbjct: 487 NTKLYVNRAEGFVGTGLRKDEYVGDCSDIDDVIVFTESGAMYVTKVSDKQYIEKNIIHV- 545

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             +    ++  V   +Y                    + I  + +     +    E ++ 
Sbjct: 546 -AVFKKDDKRTVYNMIYKDGQTGF-----SYIKRFNVTGITRDKKY--ELIPQHKESRVL 597

Query: 652 LVVKVTGDHVAVVGEN-RKL-----LIFSIDQIPEMSRGKGVRL----------QSYKDG 695
                      VV  N R+L     L + ID    + +G+GV+              K+ 
Sbjct: 598 YFTANPNGEAEVVTVNLRQLGTLRKLRWDIDFADTLIKGRGVKGNLVSKYAIKRIELKEK 657

Query: 696 GIS 698
           G+S
Sbjct: 658 GVS 660


>gi|321116500|dbj|BAJ72202.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 160

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 72/160 (45%), Positives = 112/160 (70%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 61  IMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            +LQ ++++ V F   +++ + EP V P+ FPNLL NG+S
Sbjct: 121 YLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSS 160


>gi|171912371|ref|ZP_02927841.1| DNA topoisomerase IV subunit A [Verrucomicrobium spinosum DSM 4136]
          Length = 678

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 130/512 (25%), Positives = 230/512 (44%), Gaps = 46/512 (8%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFAL-EERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  D++   +           L   L  + +L YA   I ERA+P + DG KPV RRI+H
Sbjct: 1   MTPDSLLPPSGPSHTGELHTKLVDELYGDWFLDYASYVILERAVPHINDGLKPVQRRILH 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M E+       + K A +VG  + K HPHGD S+ D++V+L Q    +  LI  QGN+G
Sbjct: 61  SMREL---EDGRYNKVANVVGNTM-KYHPHGDASIGDAMVQLGQ----KELLIDTQGNWG 112

Query: 120 NI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           NI  GD AAA RY E+R+T+ A  ++        ++ ++Y+  + EPV  P KFP LLA 
Sbjct: 113 NILTGDGAAASRYIESRLTKFALDVV--FSPKVTEWANSYDGRNKEPVTLPVKFPLLLAQ 170

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GIAVG++  +  HN  E+C+A +A +            + + PDFP GGI+      
Sbjct: 171 GVEGIAVGLSCRVLPHNFNELCDACVAALRG--------EPFQLLPDFPQGGIMD----- 217

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
               Y  G+ G +VR R  + E       + +TEIP+      + E I      K    +
Sbjct: 218 -AADYNDGQRGGKVRVRAKI-ETVPKRNMVRITEIPFGTTAGSVQESIV-AANEKGKIKI 274

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           + + D +AE V I+        DPD  +++++  +D E    +N  V+   + P  + + 
Sbjct: 275 QKVEDNTAEFVEIL-VHLPSGTDPDQAIQALYAFTDCEVSISVNAVVIQDDK-PNFISVT 332

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPV 416
            ILK    + +++L +     +  ++ +      + + I      +I      +     +
Sbjct: 333 EILKSNAEYAKQLLKQELEIELGELEEKWHFSSLEKIFIEKRIYRDIEECTTWDGVIGAI 392

Query: 417 MVS--------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                      +  +TE+ +  +  ++++ + K   ++    +  L ++ +++   L   
Sbjct: 393 WKGLTPYLGLLKREITEDDITKLTEIKIKRISKFNSFEADELIRGLESDIDQVQRYLKGL 452

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            +           +K+ + K  +   RRT   
Sbjct: 453 TR---YAISYFERIKKTYGKDRE---RRTVIA 478


>gi|315224728|ref|ZP_07866551.1| DNA topoisomerase 4 subunit A [Capnocytophaga ochracea F0287]
 gi|314945356|gb|EFS97382.1| DNA topoisomerase 4 subunit A [Capnocytophaga ochracea F0287]
          Length = 864

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 151/723 (20%), Positives = 290/723 (40%), Gaps = 91/723 (12%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            DN   + T   +++  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ 
Sbjct: 2   EDNTPQNTTPQGDSIIKV--TGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLK 59

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI- 121
           E+       + K A +VG  + + HPHGD S+ D++V++ Q    +  LI  QGN+GNI 
Sbjct: 60  EL---DDGRYNKVANVVGNTM-QYHPHGDASIGDAIVQIGQ----KDLLIDTQGNWGNIL 111

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            GD AAA RY EAR+++ A  ++        +++ +Y+    EP+  P KFP LLA GT 
Sbjct: 112 TGDDAAAPRYIEARLSKFALDVV--FSPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGTE 169

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG++T I  HN  E+ EA++A +      +         PDFPT GI+  S      
Sbjct: 170 GIAVGLSTKILPHNFIELIEASIAYLKKKPFELY--------PDFPTAGIMDVS------ 215

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            Y  G  G RVR R  + ++ + + CI  TEIP+    + LI+ I +    K    ++ +
Sbjct: 216 GYNDGARGGRVRVRAKISQLDKSTLCI--TEIPFTTTTTSLIDSILKA-NEKGKIKIKKV 272

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            D +A +V I+         PD  +++++  +  ET       V+   + P  + +  +L
Sbjct: 273 DDNTAANVEIL-VHLPNGTSPDKTIDALYAFTACETAISPITCVIEDNK-PHFLTVSEVL 330

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVE--------ILKGLLIAYLNIDEIIAIIRNEDKP 413
           +        +L +     +  ++ +          I + + I + N  +  ++     + 
Sbjct: 331 RRSTDRTVSLLKQELEIELSELEMQWHSASLEKIFIREEMYIDFKNYTDRESLYEYLYQR 390

Query: 414 KPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                      +T++ +  +  + +  + + + Y+    +  + A+ E++ + L +    
Sbjct: 391 FEPFKKDLIREITDDDLAKLTQIPMIRITRFDSYKADENILKIEADIEEVKNHLAN---L 447

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
            +        +K+ + K                      ++   E      + + +  +R
Sbjct: 448 IDYAISHFERLKKTYGK---------------------GRERKTEMRVFDTIEATKVVVR 486

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           + K +               +        D +++ +  G  Y     +      +   + 
Sbjct: 487 NTKLYVNRAEGFVGTGLRKDEYVGDCSDIDDVIVFTESGAMYVTKVSDKQYIEKNIIHV- 545

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             +    ++  V   +Y                    + I  + +     +    E ++ 
Sbjct: 546 -AVFKKDDKRTVYNMIYKDGQTGF-----SYIKRFNVTGITRDKKY--ELIPQHKESRVL 597

Query: 652 LVVKVTGDHVAVVGEN-RKL-----LIFSIDQIPEMSRGKGVRL----------QSYKDG 695
                      VV  N R+L     L + ID    + +G+GV+              K+ 
Sbjct: 598 YFTANPNGEAEVVTVNLRQLGTLRKLRWDIDFADTLIKGRGVKGNLVSKYAIKRIELKEK 657

Query: 696 GIS 698
           G+S
Sbjct: 658 GVS 660


>gi|117654189|gb|ABK55525.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654191|gb|ABK55526.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654193|gb|ABK55527.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654195|gb|ABK55528.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654197|gb|ABK55529.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654199|gb|ABK55530.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654201|gb|ABK55531.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654203|gb|ABK55532.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654205|gb|ABK55533.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654207|gb|ABK55534.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|11967832|emb|CAC19422.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 136

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 74/130 (56%), Positives = 101/130 (77%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKS
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQ 145
           + ++A  ++ 
Sbjct: 127 LAKIAHELMA 136


>gi|33469556|gb|AAQ19803.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 153

 Score =  277 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 71/153 (46%), Positives = 110/153 (71%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 1   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDA 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 61  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            F   +++ + EP V P+ FPNLL NG+SGI+ 
Sbjct: 121 SFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISA 153


>gi|295394212|gb|ADG03717.1| DNA topoisomerase IV subunit A [Streptococcus anginosus]
          Length = 151

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 72/151 (47%), Positives = 109/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++D V F   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKDTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|300726639|ref|ZP_07060075.1| DNA gyrase, A subunit [Prevotella bryantii B14]
 gi|299776077|gb|EFI72651.1| DNA gyrase, A subunit [Prevotella bryantii B14]
          Length = 912

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 137/571 (23%), Positives = 232/571 (40%), Gaps = 42/571 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A +VG 
Sbjct: 50  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANVVGH 106

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 107 TM-QFHPHGDASIGDALVQLGQ----KNLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 161

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ +  HN  EIC
Sbjct: 162 LETV--FNPKTTEWQFSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKVLPHNFIEIC 219

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            AA+A +   +  +         PDFPTGG I  S+      Y  G+ G  ++ R  +  
Sbjct: 220 NAAIAYLKGEDFHLY--------PDFPTGGSIDVSK------YNDGQRGGVLKVRAKI-- 263

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  + V EIP+    S LIE I + +   +I     I D ++    I+       +
Sbjct: 264 EKVDNKTLAVREIPFSKNTSTLIESITKAVEKGKIK-ARKIEDNTSAQAEIL-IHLAPGV 321

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  M++++  +D E     N  V+   + P  + +  +L+        +L +    R 
Sbjct: 322 SSDKTMDALYAFTDCEINISPNCCVIEDQK-PCFLTVSDVLRHSADRTMGLLRQELLIRK 380

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             ++ ++       I                                V A ++ +L   +
Sbjct: 381 HELEEQLFFNSLERIFIEERIYKERKFEQAKNQDE------------VVAFIDSKLEPFK 428

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                ++  E    L E +    L  +  +    IA    E+ EI     ++      + 
Sbjct: 429 PSFIREVTREDIVRLLEIKMQRILKYNKDKADELIAKIKAEIAEIEKDLANMVGVTINWF 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           E  R       + + E      +   +    + K +               +   +    
Sbjct: 489 EYLRNKYGEGHERLTEIRNFENIEVTKVVEANQKLYINRQEGFVGTGLKKDEFVCNCSDL 548

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           D I++   DGK   +   + +    +   +Q
Sbjct: 549 DDIIIFYKDGKFKVIKVADKIFVGKNILHVQ 579


>gi|86130200|ref|ZP_01048800.1| DNA topoisomerase IV subunit A [Dokdonia donghaensis MED134]
 gi|85818875|gb|EAQ40034.1| DNA topoisomerase IV subunit A [Dokdonia donghaensis MED134]
          Length = 893

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 149/732 (20%), Positives = 285/732 (38%), Gaps = 117/732 (15%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S +     E +  VS     E+ +L YA   I ERA+P + DGFKPV RRI+HA+ E+  
Sbjct: 21  SQTGEGSGETITRVS--GMFEDWFLDYASYVILERAVPAIEDGFKPVQRRIMHALKEL-- 76

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDS 125
                + K A +VG  + + HPHGD S+ D++V++ Q    +  LI  QGN+GNI  GD 
Sbjct: 77  -DDGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----KDLLIDTQGNWGNILTGDR 130

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RY EAR+++ A  ++   +    D++ +Y+    EP+  P  FP LLA G  GIAV
Sbjct: 131 AAASRYIEARLSKFALDVVY--NPKITDWQASYDGRKKEPINLPVMFPLLLAQGAEGIAV 188

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G++T +  HN  E+ +A++  +            + I PDFPT GI   +       Y+ 
Sbjct: 189 GLSTKVMPHNFIELIDASIKHLKGK--------RFTIYPDFPTAGIADFTD------YKD 234

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G  G ++R R  + +  +    +V+TE+P+    + LI+ I +    K    ++ I D +
Sbjct: 235 GLRGGKIRCRARMSQ--QDKNTLVITELPFGQTTTSLIDSILKA-NDKGKIKIKKIEDNT 291

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +V I+       + PD  +++++  ++ ET       V+   + P  + +  +L+   
Sbjct: 292 SANVEIL-VHLPSGISPDKTIDALYAFTNCETSISPLGCVIEDNK-PLFVGVSEMLRRST 349

Query: 366 AHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIR--------NEDKPKP 415
              + +L      ++   + +     L+ + I      +I             ++     
Sbjct: 350 DRTKALLKSELEIQLGEFENQWHYASLERIFIENRIYRDIEEQETWDGVIEAIDKGLKPH 409

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           +   + ++T   +  +  +R++ + K +  + + ++D L  +  ++   L++        
Sbjct: 410 IGHLKRAVTVEDITRLTEIRIKRISKFDIDKAQQKIDALEDQIAQVKHHLDN---LTQYA 466

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
                 +K+ + K  +       F ++  A        +        V ++         
Sbjct: 467 IDYFTRLKKDYGKGKERKTEIRVFDDIQAAKVVLRNTKLYVNRAEGFVGTSLKRDE---- 522

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                                    D I++ +  G    +   +                
Sbjct: 523 -----------------YVTDCSDIDDIIVFTKSGSMMVVKVESKTFIGK---------- 555

Query: 596 LNHNQDIVTAFVYDSTCK---LLVVSSKG-----NAFIVEESEIIANT-------RKGKT 640
                DI+   ++    K     ++   G            + +  N        +KG  
Sbjct: 556 -----DIIHVAIFKKKDKRTTYNMIYRAGSGLPTYVKRFNVTSVTRNNDYQLAGDKKGAQ 610

Query: 641 FL----KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKG------- 686
            L      + E ++  V        AV    +  L   +D   +    R  KG       
Sbjct: 611 VLYFSANPNGEAELVTVYLR-----AVASVKK--LRLEVDFADVLIKGRSSKGNIVSKNA 663

Query: 687 VRLQSYKDGGIS 698
           V+    K+ G+S
Sbjct: 664 VKSVELKEKGLS 675


>gi|295394214|gb|ADG03718.1| DNA topoisomerase IV subunit A [Streptococcus australis]
 gi|295394230|gb|ADG03726.1| DNA topoisomerase IV subunit A [Streptococcus parasanguinis]
          Length = 151

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 70/151 (46%), Positives = 108/151 (71%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|325268779|ref|ZP_08135405.1| DNA topoisomerase 4 subunit A [Prevotella multiformis DSM 16608]
 gi|324988884|gb|EGC20841.1| DNA topoisomerase 4 subunit A [Prevotella multiformis DSM 16608]
          Length = 903

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 137/571 (23%), Positives = 246/571 (43%), Gaps = 42/571 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC
Sbjct: 152 LETV--FNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +   E  +         PDFPTGG I  S+ +  +  R G    +VRAR    +
Sbjct: 210 DAAVSCLRGEEFHLY--------PDFPTGGSIDVSKYN--DGQRGG--VLKVRARVEKLD 257

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  +V+ E+P+    S L E I + +   ++  +  + D +A +V I L       
Sbjct: 258 SKT----LVIREVPFTKTASSLQESITKAVEKGKLK-IRKVEDMTASEVEIQL-HLTPGT 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P+ + +  +L+  + H + +L R    R 
Sbjct: 312 SSDKTIDALYAFTDCEINISPNCCVIEDNK-PRFLTVSDVLRNSVEHTKALLKRELEIRK 370

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             ++ ++       I   +                        + ++V A ++ +L   +
Sbjct: 371 HELEEQLFYNSLERIFIEDRIYKERKFETAR------------SLDEVVAFVDSKLEPYK 418

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           K    ++  +    L E +    L  +  +    I     E+ EI     ++ R    + 
Sbjct: 419 KTFVREVTRDDILRLLEIKMQRILKFNKDKADELIRKIKAEIAEIDKDLGEMVRVTIEWF 478

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              +           E +    +++ +    + K +    +          +   +    
Sbjct: 479 THLKEKYGKDHPRRTEIKNFDTIVAAKVVDANEKLYIDRQAGFIGTGLKKAEFVQNCSDL 538

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           D +++   DGK   +   + +        +Q
Sbjct: 539 DDVIIFYRDGKYKVIRIADKVFVGKGVLHVQ 569


>gi|108937146|gb|ABG23385.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 110/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|332293168|ref|YP_004431777.1| DNA topoisomerase (ATP-hydrolyzing) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171254|gb|AEE20509.1| DNA topoisomerase (ATP-hydrolyzing) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 895

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 127/628 (20%), Positives = 257/628 (40%), Gaps = 87/628 (13%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ +L YA   I ERA+P + DGFKPV RRI+HA+ E+       + K A +VG  + + 
Sbjct: 39  EDWFLDYASYVILERAVPSIEDGFKPVQRRIMHALKEL---DDGRYNKVANVVGHTM-QY 94

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V++ Q    +  LI  QGN+GNI  GD AAA RY EAR+T+ A  ++ 
Sbjct: 95  HPHGDASIGDAMVQIGQ----KDLLIDTQGNWGNILTGDRAAASRYIEARLTKFALDVVY 150

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             +    +++ +Y+    EP+  P  FP LLA+G  GIAVG++T +  HN  E+ +A++ 
Sbjct: 151 --NPKITEWQASYDGRKKEPINLPVMFPMLLASGAEGIAVGLSTKVLPHNFIELIDASIK 208

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            + + +        + + PDFPT GI   +       Y+ G  G +VR R  + +  +  
Sbjct: 209 HLKDKK--------FTLYPDFPTAGIADFTD------YKDGMRGGKVRCRARISQ--QDK 252

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             +V+TE+P+    + LI+ I +    K    ++ I D ++ +V I+       + PD  
Sbjct: 253 NTLVITELPFGQTTTSLIDSILKA-NDKGKIKIKKIEDNTSANVEIL-VHLPGGISPDKT 310

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  ++ ET     ++ +     P  + +  +L+      +++L      ++   + 
Sbjct: 311 IDALYAFTNCETSISP-LSCVIENNKPLFVGVTEMLRRSTDRTKDLLKAELEIQLGEFEN 369

Query: 386 RVEI--LKGLLIAYLNIDEIIAIIR--------NEDKPKPVMVSRFSLTENQVDAILNLR 435
           +     L+ + I      +I             ++     +   + ++T   +  +  +R
Sbjct: 370 QWHYASLERIFIENRIYRDIEEQETWDGVIKAIDDGLKPHIGHLKRAVTVEDITRLTEIR 429

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           ++ + K +  + + ++D L  +  ++   L++              +K+ + K  +    
Sbjct: 430 IKRISKFDIDKAQQKIDALEDQITQVKYHLDN---LTQYAIDYFTRLKKDYGKGKERKTE 486

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
              F ++  A        +        V ++                             
Sbjct: 487 IKIFDDIQAAKVVLRNTKLYVNRAEGFVGTSLKKDE---------------------YVT 525

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-- 613
                D +++ +  G    +   +                     DI+   ++    K  
Sbjct: 526 DCSDIDDVIVFTKSGTMMVVKVESKTFIGK---------------DILHVAIFKKKDKRT 570

Query: 614 -LLVVSSKG-----NAFIVEESEIIANT 635
              ++   G            + +  N 
Sbjct: 571 TYNMIYRAGNGLPTYVKRFNVTSVTRNN 598


>gi|150009781|ref|YP_001304524.1| DNA topoisomerase IV subunit A [Parabacteroides distasonis ATCC
           8503]
 gi|149938205|gb|ABR44902.1| topoisomerase IV subunit A [Parabacteroides distasonis ATCC 8503]
          Length = 911

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 133/594 (22%), Positives = 239/594 (40%), Gaps = 43/594 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V    L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRL---DDGRYN 105

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY 
Sbjct: 106 KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A   +   +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 161 EARLSKFALETV--FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +A++A +   E        + + PDF TGG I  ++      Y  G  G  V
Sbjct: 219 PHNFNELLDASIAYLRGEE--------FALYPDFQTGGSIDIAK------YNDGERGGSV 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  +      +  +V++EIPY    S +IE I +    K    ++ + D +A+DV I+
Sbjct: 265 KVRAKI--GKLDNKTLVISEIPYGKTTSTVIESILKA-NDKGKIKIKKVDDNTAKDVEIL 321

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                  +  D  +++++  +D E         +     P  + +  +L        E+L
Sbjct: 322 -VHLAPGVSSDKTIDALYAFTDCEISISP-NCCVIKEDKPHFLTVSDVLHHSTDRTLELL 379

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
                 + Q  +  +       I       I   I  + + +       +++       +
Sbjct: 380 REELKIQKQEQEEALFFASLEKIF------IEERIYKDPEFENAKNMDEAISH------I 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +LRL   +     ++  +    L E +    L  +  +    IA  + ++ +I  K   +
Sbjct: 428 DLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKLEHI 487

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                 +  + +                  + + +    + K +               +
Sbjct: 488 IDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKLYINRQEGFIGMGLKKDE 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
              +    D +++   +G    +   + +           +   N N+ I    
Sbjct: 548 FICNCSDIDDVIIFYRNGTYKIVKVADKIFIGKDIL-YVNVFKRNDNRTIYNVI 600


>gi|117654209|gb|ABK55535.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654213|gb|ABK55537.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654219|gb|ABK55540.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654221|gb|ABK55541.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654223|gb|ABK55542.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654225|gb|ABK55543.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654227|gb|ABK55544.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654229|gb|ABK55545.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654231|gb|ABK55546.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654233|gb|ABK55547.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654235|gb|ABK55548.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654237|gb|ABK55549.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 110/224 (49%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 DITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|294992577|gb|ADF57415.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 70/133 (52%), Positives = 103/133 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ V
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 153 DFRDTYNEEDSEP 165
           +F+D Y+  + EP
Sbjct: 121 NFQDNYDGSEREP 133


>gi|77166862|gb|ABA62407.1| DNA gyrase subunit A [Neochlamydia hartmannellae]
          Length = 147

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 71/147 (48%), Positives = 101/147 (68%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              +++ YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +K A+I G+ 
Sbjct: 1   EEEMKDSYLRYSMSVIISRALPDVRDGLKPSQRRILYAMRQLNLSPGAKHRKCAKISGDT 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
            G  HPHG+  +Y +LVR+AQ +V RY LI GQGNFG+IDGD  AA RY+EAR+T  +  
Sbjct: 61  SGDYHPHGEMVIYPTLVRMAQNWVMRYSLIDGQGNFGSIDGDPPAAMRYSEARLTHASMQ 120

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           +++ +D++ VD    Y+E   EPVVFP
Sbjct: 121 LMKDLDKETVDHVPNYDETKKEPVVFP 147


>gi|223936082|ref|ZP_03627996.1| DNA topoisomerase (ATP-hydrolyzing) [bacterium Ellin514]
 gi|223895304|gb|EEF61751.1| DNA topoisomerase (ATP-hydrolyzing) [bacterium Ellin514]
          Length = 701

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 143/615 (23%), Positives = 243/615 (39%), Gaps = 54/615 (8%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
               L   ++  +L YA   I++RAIP+L DG KPV RRI+ ++ E        F K A 
Sbjct: 56  VETPLHKRMDFSFLEYASYVIRDRAIPNLADGLKPVQRRILWSLHE---KDDGRFIKVAT 112

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARM 136
           I G    + HPHG+ ++ D+LV +     +RY LI GQGNFGNI  GD AAA RY E R+
Sbjct: 113 ISGHC-AQYHPHGEAAIGDALVVIT---NKRY-LIEGQGNFGNIYTGDPAAAPRYIECRL 167

Query: 137 TQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           T++A   +      +  +F  +Y+  + EPV  PSK P LL  GT GIAVGM+  I  HN
Sbjct: 168 TELARNELFND---ELTEFVPSYDGRNKEPVTLPSKLPTLLMLGTEGIAVGMSCKILPHN 224

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+ EA +A++            + + PDFPTGG++          Y  G+G  +VRA+
Sbjct: 225 FPELLEAQIAILKK--------QPFKVLPDFPTGGLMD------AREYADGKGSIKVRAK 270

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              ++       +V+ EIP       LI  I +     +I  ++ I D ++E+  I    
Sbjct: 271 IKAKDEST----VVIKEIPPMTTTDSLIGSIEDASRKGKIK-IKSINDFTSEEAEIE-IK 324

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
               +  D L+++++  +D E        ++     P  M +  +L+E  A   + L R 
Sbjct: 325 APSGVSADQLIDALYAFTDCEMSISSR-IIVIRNNRPVEMTVSEVLRENTAQLVDTLKRE 383

Query: 376 SSFRMQAIDRRVEILKGLLIAY-LNIDEIIAIIRNEDKPKP---------VMVSRFSLTE 425
              + + +   +     + I     I + I   +  +                    L +
Sbjct: 384 LELKEKKLQEELHFKTLVRIFIENRIYKKIEQCKTNEAVYEAVYDGFKPFRKEMIRDLVD 443

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
             V+ +L +R+R +   +  + + E+D + A+  +    L +  +        +  + E 
Sbjct: 444 TDVEMLLGVRIRRISLFDINKHREEIDKIKADLSETAKHLKNLTK---YAIGRLEALLEK 500

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        + + + EV   D A     +        V              VD +    
Sbjct: 501 YGPIYPRLTKSSRYDEVEAKDVAFKAFKVAYDRESGYVGHKVSGEE----FRVDCTKFDK 556

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV-- 603
                             L +  D     +P  + +    +       +       I+  
Sbjct: 557 LLLIFRDGHYKVTELQEKLFVGPDVVYCGIPDRDRIFTLAYTNREATYLKRFTFGGIIMN 616

Query: 604 -TAFVYDSTCKLLVV 617
              F      K+L  
Sbjct: 617 KEYFCIPEKSKILFF 631


>gi|117654215|gb|ABK55538.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654217|gb|ABK55539.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 110/224 (49%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L++ I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITLPELMDIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|117654255|gb|ABK55558.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654257|gb|ABK55559.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654259|gb|ABK55560.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654261|gb|ABK55561.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654263|gb|ABK55562.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 223

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 EITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|332664590|ref|YP_004447378.1| DNA topoisomerase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333404|gb|AEE50505.1| DNA topoisomerase (ATP-hydrolyzing) [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 872

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 152/750 (20%), Positives = 287/750 (38%), Gaps = 99/750 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  S T    N K + L+   ++ +L YA   I ERA+P + DG KPV RRI+HAM E  
Sbjct: 1   MDKSTTQNNGNPKLIHLQGMYQDYFLDYASYVILERAVPHIDDGLKPVQRRILHAMKE-- 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGD 124
                 + K A ++G  + + HPHGD ++ D+LV + Q    +  +I  QGN+G++  G 
Sbjct: 59  -TDDGRYNKVANVIGLTM-QYHPHGDAAIGDALVNMGQ----KDLMIDTQGNWGDVATGA 112

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RY E R+T+ +  +L   +    +++ +Y+    EPV  P+KFP LLA GT GIA
Sbjct: 113 GAAAPRYIEGRLTKFSLEVL--FNPQTTEWQMSYDGRKREPVTLPAKFPLLLAAGTDGIA 170

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VG++T I  HN  E+ +A++ ++ + ++ I         PDF TG ++  S       Y 
Sbjct: 171 VGLSTKIMPHNFIELIKASIDILKDKKVQIF--------PDFQTGAMVDVSD------YN 216

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+ G R++ R  +E++ +    I   E+PY V    LIE I +     +I + + +   
Sbjct: 217 GGKRGGRIKIRALIEKLDKDLLAI--KELPYGVTTESLIESIIKASEKGKIKIKKVVDLT 274

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +    V         PD+ +++++  +D E         +     P+ M ++ IL+  
Sbjct: 275 SKDVE--VQVELLPGTSPDVTIDALYAFTDCEVSISP-NACVIHNDKPRFMTVEEILEHN 331

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAI---------------- 406
               R++L      ++  +  +  +  L+ + I      +I                   
Sbjct: 332 TFRTRDLLRTELEIKLSELLEKWHMASLEKIFIENRIYHQIEECESWEEVLTTIDRELRK 391

Query: 407 -----IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                I N       +     + E  +  +  +R++ + K   ++    +  L  E   +
Sbjct: 392 YVATPIDNPAPNDQRLRLMRDIVEEDIVKLTEIRIKRISKYNTFKADEHIAALEEE---M 448

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             + +      +      + + E + K  +   R T+F  +   +       +       
Sbjct: 449 KQVRHDLDNLTDYTIAYYKRLLEKYGKGRERRTRITSFESIQATEVVANNAKLFVN---- 504

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
                         ++        K+ ++          D +++   DG+       + +
Sbjct: 505 --------------YAEGFIGFGLKKDENNVFVSECSDIDDVIVFRADGRFMVKRIADKV 550

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL-LVVSSKGNAFIVEESEII-ANTRKGK 639
                     +     +++      VY                 I  + E +     KG 
Sbjct: 551 FVGKDIIHAAVWKK--NDERTTYNLVYSDGSNGRCFAKRFNVTAITRDKEYVLTAEAKGS 608

Query: 640 TFL----KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKG-------V 687
             L      + E ++  V              +K   +   ++    R  +G       V
Sbjct: 609 KLLYFSTNPNGEAEVVSVQLTQAS-----TAKKKQFDYDFKELAIKGRSSQGNLITKYPV 663

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           R  S K+ G S +   K+       D +GR
Sbjct: 664 RKVSLKEAGKSTIGAIKV----YIDDVSGR 689


>gi|325855710|ref|ZP_08171901.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola CRIS
           18C-A]
 gi|325483763|gb|EGC86725.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola CRIS
           18C-A]
          Length = 992

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 136/571 (23%), Positives = 243/571 (42%), Gaps = 42/571 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 124 LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 180

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 181 TM-QFHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 235

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC
Sbjct: 236 LETV--FNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 293

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +   E  +         PDFPTGG I  S+ +  +  R G    +VRAR    +
Sbjct: 294 DAAVGCLRGEEFHLY--------PDFPTGGSIDVSKYN--DGQRGG--VLKVRARVEKLD 341

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  +V+ E+P+    S L E I + +   ++  +  + D +A +V I L       
Sbjct: 342 SKT----LVIREVPFTKTASSLQESITKAVEKGKLK-IRKVEDMTASEVEIQL-HLTPGT 395

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P+ + +  +L+  + H + +L      R 
Sbjct: 396 SSDKTIDALYAFTDCEINISPNCCVIEDNK-PRFLTVSDVLRNSVEHTKALLKMELEIRK 454

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             ++ ++       I   +                        + ++V A ++ +L   +
Sbjct: 455 HELEEQLFYNSLERIFIEDRIYKERKFETAR------------SLDEVVAFVDSKLEPYK 502

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           K    ++  +    L E      L  +  +    I     E+ EI     ++ R    + 
Sbjct: 503 KTFVREVTRDDILRLLEIRMQRILKFNKDKADELIQKIKAEIAEIDKDLGEMVRVTIEWF 562

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              +           E +    +++ +    + K +    +          +   +    
Sbjct: 563 THLKEKYGKDHLRRTEIKNFDTIVAAKVVDANEKLYIDRQAGFIGTGLKKAEFVQNCSDL 622

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           D +++   DGK   +   + +        +Q
Sbjct: 623 DDVIIFYRDGKYKVIRIADKVFVGKGVLHVQ 653


>gi|301312343|ref|ZP_07218260.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 20_3]
 gi|300829765|gb|EFK60418.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 20_3]
          Length = 911

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 133/594 (22%), Positives = 240/594 (40%), Gaps = 43/594 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V    L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRL---DDGRYN 105

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY 
Sbjct: 106 KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A   +   +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 161 EARLSKFALETV--FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +A++A +   E        + + PDF TGG I  ++      Y  G  G  V
Sbjct: 219 PHNFNELLDASIAYLRGEE--------FALYPDFQTGGSIDIAK------YNDGERGGSV 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  +      +  +V++EIPY    S +IE I +    K    ++ + D +A+DV I+
Sbjct: 265 KVRAKI--GKLDNKTLVISEIPYGKTTSTVIESILKA-NDKGKIKIKKVDDNTAKDVEIL 321

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                  +  D  +++++  +D E         +     P  + +  +L+       E+L
Sbjct: 322 -VHLAPGVSSDKTIDALYAFTDCEISISP-NCCVIKEDKPHFLTVSDVLRHSTDRTLELL 379

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
                 + Q  +  +       I       I   I  + + +       +++       +
Sbjct: 380 REELKIQKQEQEEALFFASLEKIF------IEERIYKDPEFENAKNMDEAISH------I 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +LRL   +     ++  +    L E +    L  +  +    IA  + ++ +I  K   +
Sbjct: 428 DLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKLEHI 487

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                 +  + +                  + + +    + K +               +
Sbjct: 488 VDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKLYINRQEGFIGMGLKKDE 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
              +    D +++   +G    +   + +           +   N N+ I    
Sbjct: 548 FICNCSDIDDVIIFYRNGTYKIVKVADKIFIGKDIL-YVNVFKRNDNRTIYNVI 600


>gi|256838469|ref|ZP_05543979.1| topoisomerase IV subunit A [Parabacteroides sp. D13]
 gi|256739388|gb|EEU52712.1| topoisomerase IV subunit A [Parabacteroides sp. D13]
          Length = 911

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 133/594 (22%), Positives = 240/594 (40%), Gaps = 43/594 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V    L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRL---DDGRYN 105

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY 
Sbjct: 106 KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A   +   +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 161 EARLSKFALETV--FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +A++A +   E        + + PDF TGG I  ++      Y  G  G  V
Sbjct: 219 PHNFNELLDASIAYLRGEE--------FALYPDFQTGGSIDIAK------YNDGERGGSV 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  +      +  +V++EIPY    S +IE I +    K    ++ + D +A+DV I+
Sbjct: 265 KVRAKI--GKLDNKTLVISEIPYGKTTSTVIESILKA-NDKGKIKIKKVDDNTAKDVEIL 321

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                  +  D  +++++  +D E         +     P  + +  +L+       E+L
Sbjct: 322 -VHLAPGVSSDKTIDALYAFTDCEISISP-NCCVIKEDKPHFLTVSDVLRHSTDRTLELL 379

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
                 + Q  +  +       I       I   I  + + +       +++       +
Sbjct: 380 REELKIQKQEQEEALFFASLEKIF------IEERIYKDPEFENAKNMDEAISH------I 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +LRL   +     ++  +    L E +    L  +  +    IA  + ++ +I  K   +
Sbjct: 428 DLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKLEHI 487

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                 +  + +                  + + +    + K +               +
Sbjct: 488 VDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKLYINRQEGFIGMGLKKDE 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
              +    D +++   +G    +   + +           +   N N+ I    
Sbjct: 548 FICNCSDIDDVIIFYRNGTYKIVKVADKIFIGKDIL-YVNVFKRNDNRTIYNVI 600


>gi|261599195|gb|ACX85660.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 108/152 (71%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ERA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD++V
Sbjct: 8   ERALPDIRDGLKPVQRRILYSMNKDGNAHDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMV 67

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V +   ++
Sbjct: 68  RMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAWNFD 127

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           + + EP V P+ FPNLL NG +GI+ G AT I
Sbjct: 128 DTEKEPTVLPAAFPNLLVNGATGISAGYATDI 159


>gi|190888608|gb|ACE95929.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888610|gb|ACE95930.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888614|gb|ACE95932.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888616|gb|ACE95933.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888624|gb|ACE95937.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888626|gb|ACE95938.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888628|gb|ACE95939.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888632|gb|ACE95941.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888634|gb|ACE95942.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888636|gb|ACE95943.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888640|gb|ACE95945.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888648|gb|ACE95949.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888650|gb|ACE95950.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888652|gb|ACE95951.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 151

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/150 (50%), Positives = 110/150 (73%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA   I+ERA+PD+RDG KPV RRI++ M  +GL +  +++KSA  VGEVIGK HPHGD 
Sbjct: 2   YAKYIIQERALPDIRDGLKPVQRRILYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGDS 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y++LVR+ Q +    PLI  QGN G+IDGD+AAA RYTEAR++    L+L+ ++++ V
Sbjct: 62  SIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEARLSHYGNLMLENINKETV 121

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           +F + +++ + EP + PS  PNLL NG++G
Sbjct: 122 NFVNNFDDSEVEPTILPSLLPNLLVNGSTG 151


>gi|255012928|ref|ZP_05285054.1| DNA topoisomerase IV subunit A [Bacteroides sp. 2_1_7]
          Length = 911

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 133/594 (22%), Positives = 240/594 (40%), Gaps = 43/594 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V    L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRL---DDGRYN 105

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY 
Sbjct: 106 KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A   +   +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 161 EARLSKFALETV--FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +A++A +   E        + + PDF TGG I  ++      Y  G  G  V
Sbjct: 219 PHNFNELLDASIAYLRGEE--------FALYPDFQTGGSIDIAK------YNDGERGGSV 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  +      +  +V++EIPY    S +IE I +    K    ++ + D +A+DV I+
Sbjct: 265 KVRAKI--GKLDNKTLVISEIPYGKTTSTVIESILKA-NDKGKIKIKKVDDNTAKDVEIL 321

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                  +  D  +++++  +D E         +     P  + +  +L+       E+L
Sbjct: 322 -VHLAPGVSSDKTIDALYAFTDCEISISP-NCCVIKEDKPHFLTVSDVLRHSTDRTLELL 379

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
                 + Q  +  +       I       I   I  + + +       +++       +
Sbjct: 380 REELKIQKQEQEEALFFASLEKIF------IEERIYKDPEFENAKNMDEAISH------I 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +LRL   +     ++  +    L E +    L  +  +    IA  + ++ +I  K   +
Sbjct: 428 DLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKLEHI 487

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                 +  + +                  + + +    + K +               +
Sbjct: 488 VDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKLYINRQEGFIGMGLKKDE 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
              +    D +++   +G    +   + +           +   N N+ I    
Sbjct: 548 FICNCSDIDDVIIFYRNGTYKIVKVADKIFIGKDIL-YVNVFKRNDNRTIYNVI 600


>gi|327314054|ref|YP_004329491.1| DNA gyrase/topoisomerase IV subunit A [Prevotella denticola F0289]
 gi|326944941|gb|AEA20826.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola F0289]
          Length = 992

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 136/571 (23%), Positives = 243/571 (42%), Gaps = 42/571 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 124 LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 180

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 181 TM-QFHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 235

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC
Sbjct: 236 LETV--FNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 293

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +   E  +         PDFPTGG I  S+ +  +  R G    +VRAR    +
Sbjct: 294 DAAVGCLRGEEFHLY--------PDFPTGGSIDVSKYN--DGQRGG--VLKVRARVEKLD 341

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  +V+ E+P+    S L E I + +   ++  +  + D +A +V I L       
Sbjct: 342 SKT----LVIREVPFTKTASSLQESITKAVEKGKLK-IRKVEDMTASEVEIQL-HLTPGT 395

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P+ + +  +L+  + H + +L      R 
Sbjct: 396 SSDKTIDALYAFTDCEINISPNCCVIEDNK-PRFLTVSDVLRNSVEHTKALLKMELEIRK 454

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             ++ ++       I   +                        + ++V A ++ +L   +
Sbjct: 455 HELEEQLFYNSLERIFIEDRIYKERKFETAR------------SLDEVVAFVDSKLEPYK 502

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           K    ++  +    L E      L  +  +    I     E+ EI     ++ R    + 
Sbjct: 503 KTFVREVTRDDILRLLEIRMQRILKFNKDKADELIRKIKAEIAEIDKDLGEMVRVTIEWF 562

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              +           E +    +++ +    + K +    +          +   +    
Sbjct: 563 THLKEKYGKDHLRRTEIKNFDTIVAAKVVDANEKLYIDRQAGFIGTGLKKAEFVQNCSDL 622

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           D +++   DGK   +   + +        +Q
Sbjct: 623 DDVIIFYRDGKYKVIRIADKVFVGKGVLHVQ 653


>gi|298374175|ref|ZP_06984133.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_19]
 gi|298268543|gb|EFI10198.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_19]
          Length = 911

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 133/594 (22%), Positives = 240/594 (40%), Gaps = 43/594 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V    L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRL---DDGRYN 105

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY 
Sbjct: 106 KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A   +   +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 161 EARLSKFALETV--FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +A++A +   E        + + PDF TGG I  ++      Y  G  G  V
Sbjct: 219 PHNFNELLDASIAYLRGEE--------FALYPDFQTGGSIDIAK------YNDGERGGSV 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  +      +  +V++EIPY    S +IE I +    K    ++ + D +A+DV I+
Sbjct: 265 KVRAKI--GKLDNKTLVISEIPYGKTTSTVIESILKA-NDKGKIKIKKVDDNTAKDVEIL 321

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                  +  D  +++++  +D E         +     P  + +  +L+       E+L
Sbjct: 322 -VHLAPGVSSDKTIDALYAFTDCEISISP-NCCVIKEDKPHFLTVSDVLRHSTDRTLELL 379

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
                 + Q  +  +       I       I   I  + + +       +++       +
Sbjct: 380 REELKIQKQEQEEALFFASLEKIF------IEERIYKDPEFENAKNMDEAISH------I 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +LRL   +     ++  +    L E +    L  +  +    IA  + ++ +I  K   +
Sbjct: 428 DLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKLEHI 487

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                 +  + +                  + + +    + K +               +
Sbjct: 488 VDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKLYINRQEGFIGMGLKKDE 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
              +    D +++   +G    +   + +           +   N N+ I    
Sbjct: 548 FICNCSDIDDVIIFYRNGTYKIVKVADKIFIGKDIL-YVNVFKRNDNRTIYNVI 600


>gi|304384322|ref|ZP_07366733.1| DNA topoisomerase 4 subunit A [Prevotella marshii DSM 16973]
 gi|304334638|gb|EFM00920.1| DNA topoisomerase 4 subunit A [Prevotella marshii DSM 16973]
          Length = 901

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 137/614 (22%), Positives = 247/614 (40%), Gaps = 51/614 (8%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  G SAAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGSSAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LETV--FNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +   E  +         PDFPTGG I  S+      Y  G+ G  V+ R  +E 
Sbjct: 210 DAAVSCLRGEEFHVY--------PDFPTGGSIDVSK------YNDGQRGGTVKVRAKIE- 254

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
             + +  +V+ +IP+      LI+ I + +   +I  +  + D +A +V I+       +
Sbjct: 255 -KQDNKTLVIKDIPFSKTSETLIDSITKAVEKNKIK-VRKVEDLTAANVEIL-VHLAPGV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P+ + +  +L++       ++      R 
Sbjct: 312 SSDKTLDALYAFTDCEINISPNCCVIEDNK-PKFLTVSDVLRQSARQTMRLMKTELEIRR 370

Query: 381 QAIDRRVEILKGLLIAY-LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
             +  ++       I     I +     +  D           LT      +  +R   +
Sbjct: 371 NELMEQLFFSSLEKIFIEERIYKERRFEQAADMDAACSFIDEKLTPFYPQFVREVRKEDI 430

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            +L E +++               L  +  +    IA    EV  I     +L      +
Sbjct: 431 LRLMEIKMQ-------------RILKFNKDKADELIARIKEEVAGIDRDLQNLVEITCNW 477

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               +    +    + E +    + + +    + K +               +   +   
Sbjct: 478 FIYLKEKYGSEHPRLTEIKNFETIEAVKVAEANEKLYINRADGFIGTALKRDEFVCNCSD 537

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
            D I++   DGK   +   + +    +   +Q+    +          Y    +      
Sbjct: 538 IDDIIIFYRDGKYKVIRVADKIFVGKNIIHLQVFKKNDKRTIYNAV--YRDGKQGFY--- 592

Query: 620 KGNAFIVEESEIIA 633
                    + +  
Sbjct: 593 --YIKRFNVTSMTR 604


>gi|193735146|gb|ACF20082.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 110/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDYAVYGTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|307566200|ref|ZP_07628651.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella amnii CRIS
           21A-A]
 gi|307345093|gb|EFN90479.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella amnii CRIS
           21A-A]
          Length = 905

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 141/586 (24%), Positives = 249/586 (42%), Gaps = 42/586 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P++ DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPNIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ EIC
Sbjct: 152 LETV--FNPKTTNWQQSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNEIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            AA++ +   +        + I PDF TGG I  S+      Y  G+ G  ++ R  +  
Sbjct: 210 SAAISYLKGKD--------FSIYPDFATGGSIDVSK------YNNGQRGGTLKIRAKI-- 253

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  +V+ E+P+    S + E I + I   +I  +  + D +A +V I L   + + 
Sbjct: 254 EKLDHKTLVIREVPFTKTASSIQESITKAIEKGKIK-IRKVEDMTASEVEIHL-HLSPNT 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E         +     P  + +  +LK  + H RE+L +    R 
Sbjct: 312 SSDKTIDALYAFTDCEISISP-NCCVIENNKPHFLTISDVLKHSVDHTRELLKQELEIRK 370

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             ++ ++       I                  K             V A ++ ++   +
Sbjct: 371 HELEEQLFYNSLERIFIEERIYKEHKFETAKDLKE------------VVAFVDSKIEPFK 418

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           K    ++  E    L E +    L  +  +  + I     E+ EI    +++ R    + 
Sbjct: 419 KHFIREVTREDIIHLLEIKMQRILKFNKDKADDVIIKIKAEIAEIDKDLSEMTRVTIEWF 478

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           +  +           E +    +I+++    + K +    S          +   +    
Sbjct: 479 KHLKGKYGKEHIRKTEIKNFDTIIASKVIDANEKLYIDRSSGFIGTGLKKSEFVQNCSDL 538

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D I++   DGK   +   + +    +   +Q+    +      T +
Sbjct: 539 DDIIIFYRDGKYKVIRVADKVFVGKNILHLQVFKKNDKRTIYNTVY 584


>gi|317474502|ref|ZP_07933776.1| topoisomerase IV [Bacteroides eggerthii 1_2_48FAA]
 gi|316909183|gb|EFV30863.1| topoisomerase IV [Bacteroides eggerthii 1_2_48FAA]
          Length = 904

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 149/699 (21%), Positives = 267/699 (38%), Gaps = 61/699 (8%)

Query: 2   GVDNISNSNTLVEENV-KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           G +  S+       +V     L    +  +L YA   I ERA+P + DG KPV RRI+H+
Sbjct: 19  GGEGHSDYKPADTNDVNIKHQLSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHS 78

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  M       + K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GN
Sbjct: 79  MRRM---EDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGN 130

Query: 121 I-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           I  GDSAAA RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G
Sbjct: 131 ILTGDSAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQG 188

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVG+++ I  HN  E+C+A++  + N E  +         PDF TGG I  S+   
Sbjct: 189 VEGIAVGLSSKILPHNFNELCDASVKYLHNEEFKLY--------PDFQTGGNIDVSK--- 237

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
              Y  G  G  VR R  +      +  +V+ EIPY    + + + I +     +I  ++
Sbjct: 238 ---YNDGERGGAVRVRAKI--EKVDNKTLVIREIPYGKTVASVCDSIVKASEKGKIK-IK 291

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            + D ++E+V I+       +  D  +++++  +D E     N  V+   + P  + +  
Sbjct: 292 KVEDLTSENVEIL-VHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDEQK-PHFLTVSD 349

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY-LNIDEIIAIIRNEDKPKPVMV 418
           +LK+ + +   +L +    R   I   +       I     I +     + ++       
Sbjct: 350 VLKKSVDNTLALLRQELEIRKNEILESLHFSSLEKIFIEERIYKDKEFEQAKNMDAACEH 409

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               LT      I  +           +        +     +    +  ++   ++  +
Sbjct: 410 IDERLTPYYPTFIREVT----------KEDILKLMEIKMARILKFNSDKAEELIARMKAD 459

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           I E+    +   +       +  + +           E      + S +    + K +  
Sbjct: 460 IEEIDRHLANIVEY---TVDWFRMLKEKYGKGFPRRTELRNFDTIDSTKVVEANEKLYIN 516

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                        +   +    D +++   DG+    P  +     G       +   N 
Sbjct: 517 REEGFIGTGLKKDEFITNCSDLDDVIIFFRDGRYIITPVTD-KKFVGKNILYANVFKKND 575

Query: 599 NQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF---LKVSSEEKMKLV 653
            + I              +   +  +     E ++   T   +        + E ++  V
Sbjct: 576 KRTIYNVVYRDGKEGTHYIKRFAVTSVVRDREYDVTQGTPDSRIVYFTANPNGEAEVIKV 635

Query: 654 VKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRL 689
                  +       + +IF  D  QI    R   G  L
Sbjct: 636 TLKPNPRI-------RRIIFEEDFSQINIKGRQAMGNIL 667


>gi|295394222|gb|ADG03722.1| DNA topoisomerase IV subunit A [Streptococcus intermedius]
          Length = 151

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/151 (47%), Positives = 108/151 (71%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR+ ++A  +LQ +++D V F   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLAEIAGYLLQDIEKDTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|193735140|gb|ACF20079.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/141 (55%), Positives = 109/141 (77%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++ M E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYTMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|294992575|gb|ADF57414.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/133 (53%), Positives = 103/133 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDF 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ V
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 153 DFRDTYNEEDSEP 165
           DF+D Y+  + EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|294992573|gb|ADF57413.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/133 (53%), Positives = 102/133 (76%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y ++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ V
Sbjct: 61  SIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 153 DFRDTYNEEDSEP 165
           DF+D Y+  + EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|323344338|ref|ZP_08084563.1| DNA topoisomerase 4 subunit A [Prevotella oralis ATCC 33269]
 gi|323094465|gb|EFZ37041.1| DNA topoisomerase 4 subunit A [Prevotella oralis ATCC 33269]
          Length = 905

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 136/596 (22%), Positives = 252/596 (42%), Gaps = 42/596 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV++ Q    +  L+  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQMGQ----KDLLVDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+ + I  HN+ +IC
Sbjct: 152 LDVV--FNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLTSKILPHNLNDIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +   +        + I PDFPTGG I  S+      Y  G+ G  ++ R  +  
Sbjct: 210 DAAISYLKGED--------FCIYPDFPTGGSIDVSK------YNDGQRGGTLKVRAKI-- 253

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  +V+ EIP+    + LI+ I + I   +I     + D +A +V I        +
Sbjct: 254 EKLDNKTLVIKEIPFSKTTTTLIDSILKAIDKGKIK-ARKVDDNTAAEVEIQ-VHLAPGV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  SD E     N  V+   + P  + +  +L+  +     +L +    RM
Sbjct: 312 SSDKTIDALYAFSDCEINISPNCCVIEDNK-PCFLTVSDVLRHSVDSTMGLLRKELLIRM 370

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
           + ++ ++                +  I  E++         +   +   A ++ RL   +
Sbjct: 371 KELNEQLFFAS------------LEKIFIEERIYKDKKFEEAKNMDAAVAHIDSRLEPFK 418

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                +I  +    L E +    L  +  +    IA  + E+K+I      +     ++ 
Sbjct: 419 PTFIREITRDDILRLMEIKMQRILKFNKDKADELIAKILAEIKDIKHDLDHMTEVTISWF 478

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           +  +         + E +    + + +    + K +               +   +    
Sbjct: 479 QFIKDKYGKDHPRLTEIKNFDTIEATKVVEANEKLYINRAEGFVGTGLKKDEYICNCSDI 538

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           D I++   DGK   +   + +    +   +Q+    +        +         +
Sbjct: 539 DDIIIFYRDGKYKIIRVADKIFVGKNVIHVQVFKKNDRRTIYNVVYRDGKQGYYFI 594


>gi|116582920|gb|ABK00079.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 111/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY+++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYNTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|262382912|ref|ZP_06076049.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_33B]
 gi|262295790|gb|EEY83721.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_33B]
          Length = 911

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 133/594 (22%), Positives = 240/594 (40%), Gaps = 43/594 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V    L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 49  DARVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRL---DDGRYN 105

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY 
Sbjct: 106 KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A   +   +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 161 EARLSKFALETV--FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +A++A +   E        + + PDF TGG I  ++      Y  G  G  V
Sbjct: 219 PHNFNELLDASIAYLRGEE--------FALYPDFQTGGSIDIAK------YNDGERGGSV 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  +      +  +V++EIPY    S +IE I +    K    ++ + D +A+DV I+
Sbjct: 265 KVRAKI--GKLDNKTLVISEIPYGKTTSTVIESILKA-NDKGKIKIKKVDDNTAKDVEIL 321

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                  +  D  +++++  +D E         +     P  + +  +L+       E+L
Sbjct: 322 -VHLAPGVSSDKTIDALYAFTDCEISISP-NCCVIKEDKPHFLTVSDVLRHSTDRTLELL 379

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
                 + Q  +  +       I       I   I  + + +       +++       +
Sbjct: 380 REELKIQKQEQEEALFFASLEKIF------IEERIYKDPEFENAKNMDEAISH------I 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +LRL   +     ++  +    L E +    L  +  +    IA  + ++ +I  K   +
Sbjct: 428 DLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKLEHI 487

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                 +  + +                  + + +    + K +               +
Sbjct: 488 IDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKLYINRQEGFIGMGLKKDE 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
              +    D +++   +G    +   + +           +   N N+ I    
Sbjct: 548 FICNCSDIDDVIIFYRNGTYKIVKVADKIFIGKDIL-YVNVFKRNDNRTIYNVI 600


>gi|258648955|ref|ZP_05736424.1| DNA topoisomerase 4 subunit A [Prevotella tannerae ATCC 51259]
 gi|260850558|gb|EEX70427.1| DNA topoisomerase 4 subunit A [Prevotella tannerae ATCC 51259]
          Length = 896

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 134/594 (22%), Positives = 239/594 (40%), Gaps = 45/594 (7%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L       +L YA   I ERA+P   DG KPV RRI+HAM  +       + K A +VG
Sbjct: 31  PLTGMYRNWFLDYASYVILERAVPHSDDGLKPVQRRILHAMKRL---DDGRYNKVANVVG 87

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ 
Sbjct: 88  HTM-QFHPHGDASIGDALVQLGQ----KNLLIDTQGNWGNILTGDDAAAPRYIEARLSKF 142

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++   +     ++ +Y+  + EP+  P KFP LLA G  GIAVG++  I  HN  E+
Sbjct: 143 ALDVV--FNPKTTAWKLSYDGRNKEPIALPVKFPLLLAQGAEGIAVGLSAKILPHNFGEL 200

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+AA+  +            + I PDF TGG I  S      +Y+ GR G  V+ R  + 
Sbjct: 201 CQAAIQYLRG--------EAFTIYPDFQTGGSIDVS------NYKEGRRGGSVKVRAKIS 246

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           ++      +V+TEIP+      +I+ I      K    +  + D +A +V I+       
Sbjct: 247 KLDNN-KTLVITEIPFGTTTQSIIDSILRA-NEKGKIKVRKVDDNTAAEVEIL-VHLAPG 303

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              D  +++++  +D E     N  V++  + P+ + ++ +L++ +     +L      R
Sbjct: 304 TSSDKAIDALYAFTDCEVSISPNCVVITD-KKPRFLSVNEVLQQSVDRTMSLLRSELEIR 362

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
              +   +       I              E   K     +   T+     I        
Sbjct: 363 RHELLESLHYASLERIFI-----------EERIYKDKAFEQAISTDAACIHIDERLTPYY 411

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            +      K ++  LL   +    L  + ++    IA    +V  I     ++      +
Sbjct: 412 PQFYREVTKEDILRLLE-IKMARILKFNKEKADELIARMTADVARINKDLNNMTGVTINW 470

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            ++     A       E      +++++    + K +               +   +   
Sbjct: 471 FQLLFDKYAAEHPRRTELRSFDTIVASKVVEANQKLYVNRADGFMGTSLKKDEFVDNCSD 530

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            D ++L   DG    +   + +      ++ +         +++   V+    +
Sbjct: 531 IDDVILFYRDGTYKVVRVADKVFIGRTEKSEKEHRKP----ELIHIAVFKKNDR 580


>gi|193735136|gb|ACF20077.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 110/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYATIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|218131890|ref|ZP_03460694.1| hypothetical protein BACEGG_03513 [Bacteroides eggerthii DSM 20697]
 gi|217986193|gb|EEC52532.1| hypothetical protein BACEGG_03513 [Bacteroides eggerthii DSM 20697]
          Length = 904

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 148/699 (21%), Positives = 266/699 (38%), Gaps = 61/699 (8%)

Query: 2   GVDNISNSNTLVEENV-KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           G +  S+       +V     L    +  +L YA   I ERA+P + DG KPV RRI+H+
Sbjct: 19  GGEGHSDYKPADTNDVNIKHQLSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHS 78

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  M       + K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GN
Sbjct: 79  MRRM---EDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGN 130

Query: 121 I-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           I  GDSAAA RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G
Sbjct: 131 ILTGDSAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQG 188

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVG+++ I  HN  E+C+A++  + N E  +         PDF TGG I  S+   
Sbjct: 189 VEGIAVGLSSKILPHNFNELCDASVKYLHNEEFKLY--------PDFQTGGNIDVSK--- 237

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
              Y  G  G  VR R  +      +  +V+ EIPY    + + + I +     +I  ++
Sbjct: 238 ---YNDGERGGAVRVRAKI--EKVDNKTLVIREIPYGKTVASVCDSIVKASEKGKIK-IK 291

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            + D ++ +V I+       +  D  +++++  +D E     N  V+   + P  + +  
Sbjct: 292 KVEDLTSGNVEIL-VHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDEQK-PHFLTVSD 349

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY-LNIDEIIAIIRNEDKPKPVMV 418
           +LK+ + +   +L +    R   I   +       I     I +     + ++       
Sbjct: 350 VLKKSVDNTLALLRQELEIRKNEILESLHFSSLEKIFIEERIYKDKEFEQAKNMDAACEH 409

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               LT      I  +           +        +     +    +  ++   ++  +
Sbjct: 410 IDERLTPYYPTFIREVT----------KEDILKLMEIKMARILKFNSDKAEELIARMKAD 459

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           I E+    +   +       +  + +           E      + S +    + K +  
Sbjct: 460 IEEIDRHLANIVEY---TVDWFRMLKEKYGKGFPRRTELRNFDTIDSTKVVEANEKLYIN 516

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                        +   +    D +++   DG+    P  +     G       +   N 
Sbjct: 517 REEGFIGTGLKKDEFIANCSDLDDVIIFFRDGRYIITPVTD-KKFVGKNILYANVFKKND 575

Query: 599 NQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF---LKVSSEEKMKLV 653
            + I              +   +  +     E ++   T   +        + E ++  V
Sbjct: 576 KRTIYNVVYRDGKEGTHYIKRFAVTSVVRDREYDVTQGTPDSRIVYFTANPNGEAEVIKV 635

Query: 654 VKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRL 689
                  +       + +IF  D  QI    R   G  L
Sbjct: 636 TLKPNPRI-------RRIIFEEDFSQINIKGRQAMGNIL 667


>gi|163789018|ref|ZP_02183462.1| DNA topoisomerase IV subunit A [Flavobacteriales bacterium ALC-1]
 gi|159875682|gb|EDP69742.1| DNA topoisomerase IV subunit A [Flavobacteriales bacterium ALC-1]
          Length = 891

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 135/597 (22%), Positives = 257/597 (43%), Gaps = 66/597 (11%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D++ N ++  +E +K V      ++ +L YA   I ERA+P + DGFKPV RRI+H+M +
Sbjct: 6   DDLLNEDSGNQETIKKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKD 63

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-D 122
           +       + K A IVG  + + HPHGD S+ D++V++ Q    +  LI  QGN+GNI  
Sbjct: 64  L---DDGRYNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILT 115

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RY EAR+++ A  ++   +    +++ +Y+    EP+  P  FP LLA G  G
Sbjct: 116 GDRAAASRYIEARLSKFALDVVY--NPKITEWQASYDGRRKEPINLPVMFPLLLAQGGEG 173

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVG++T I  HN  E+ +A++  +            + I PDFPT GI   +      +
Sbjct: 174 IAVGLSTKILPHNFIELIDASVKHLKGK--------RFTILPDFPTAGIADFT------N 219

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G  G +VR R  + +  + +  I  TEIP+    S LI+ I +    K    ++ I 
Sbjct: 220 YNDGLRGGKVRVRAKIAQRDKNTLAI--TEIPFATTTSSLIDSILKA-NDKGKIKIKKIE 276

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D +A +V I+       L PD  +++++  ++ ET       V+   + P  + +  +L+
Sbjct: 277 DNTAAEVEIL-IHLPSGLSPDKTIDALYAFTNCETSISPLGCVIEDNK-PFFVGVTEMLR 334

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIR--------NEDK 412
               +  ++L +    ++  ++ +     L+ + I      +I             ++  
Sbjct: 335 RSTDNTVQLLKQELEIKLSELEEQWHFASLERIFIEKRIYRDIEEEETWEGVIKAIDKGL 394

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
              V   +  +TE+ +  +  +R++ + K +  + + ++D L  +  ++   L +     
Sbjct: 395 APHVKHLKRKVTEDDIVRLTEIRIKRISKFDIDKAQQKIDALEDQIAEVKHHLAN---LI 451

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
           +        +K+ + +  +       F +V           +        + ++      
Sbjct: 452 DYAIAYFERLKKDYGEGKERKTEIRIFEDVDATKVVIRNTKLYVNREEGFIGTSLRRDE- 510

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                                       D I++ + +GK      G+      +   
Sbjct: 511 --------------------YVCDCSDIDDIIVFTKEGKMMVTKVGSKTFIGKNIIH 547


>gi|327179196|gb|AEA30141.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 141

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/141 (58%), Positives = 111/141 (78%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           Y L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V 
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVM 120

Query: 169 PSKFPNLLANGTSGIAVGMAT 189
           P+K PNLL NG+SGIAVG AT
Sbjct: 121 PTKIPNLLVNGSSGIAVGKAT 141


>gi|295394220|gb|ADG03721.1| DNA topoisomerase IV subunit A [Streptococcus infantis]
 gi|295394224|gb|ADG03723.1| DNA topoisomerase IV subunit A [Streptococcus mitis]
 gi|295394228|gb|ADG03725.1| DNA topoisomerase IV subunit A [Streptococcus oralis ATCC 35037]
          Length = 151

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 70/151 (46%), Positives = 110/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I++RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|11245231|gb|AAG33513.1|AF302676_1 topoisomerase II [Enterobacter cloacae]
          Length = 135

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/134 (55%), Positives = 103/134 (76%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSA   RYTE RM+++A  ++  +
Sbjct: 61  PHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAGVMRYTEIRMSKIAHELMADL 120

Query: 148 DEDAVDFRDTYNEE 161
           +++  DF D YN  
Sbjct: 121 EKETDDFVDNYNGT 134


>gi|330996113|ref|ZP_08320006.1| DNA gyrase/topoisomerase IV, A subunit [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573884|gb|EGG55465.1| DNA gyrase/topoisomerase IV, A subunit [Paraprevotella xylaniphila
           YIT 11841]
          Length = 911

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 144/636 (22%), Positives = 249/636 (39%), Gaps = 54/636 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                  +     L    +  +L YA   I ERA+P + DGFKPV RRI+H+M  M    
Sbjct: 27  QPETNPHDSITHHLSGMYQNWFLDYASYVILERAVPHINDGFKPVQRRILHSMKRM---D 83

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAA 127
              + K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GDSAA
Sbjct: 84  DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDSAA 138

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+
Sbjct: 139 APRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 196

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           ++ I  HN+ EIC+AA+  +      +         PDF TGG I  S+      Y  G 
Sbjct: 197 SSKILPHNLNEICDAAVNYLHGEPFQLY--------PDFLTGGSIDVSK------YNDGG 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  V+ R  + ++   +  I   EIPY    + LI+ I + I   +I  +  + D +A 
Sbjct: 243 RGGVVKVRAKITKIDNKTLAI--REIPYGKTTTTLIDSILKAIEKGKIK-VRKVEDNTAA 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +V I+       +  D  +++++  +D E     N  V+   + P  + +  +LK  + +
Sbjct: 300 EVEIL-VHLTPGVSSDKALDALYAFTDCEVSISPNCCVIDD-KKPCFLTVSEVLKRSVDN 357

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
              +L +    R   +   +       I       I   I  +   +       + T   
Sbjct: 358 TLGLLRKELLIRKGELQESLHFASLEKIF------IEERIYKDRNFEQAKDMDAACTH-- 409

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
               ++ RL         ++  +    L + +    L  +  +  + IA    E+  I  
Sbjct: 410 ----IDERLTPFYPQMIREVTQDDILKLMDIKMARILKFNKDKANDAIARMKDEIARIDR 465

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
              ++      +  + +A          E      +++ +    + K +           
Sbjct: 466 DLDNMVEVTCNWFRMLKAKYGNEHPRHTELRNFDTIVATKVVEANEKLYINREEGFIGTS 525

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
               +   +    D  ++   DG    +   +         +           +I+ A V
Sbjct: 526 LKKDEFIANCSDIDDAIIFYRDGTYKVIRISDKTFVGETERSKAE----KKKAEIIHAAV 581

Query: 608 YDSTCK---LLVVSSKG-----NAFIVEESEIIANT 635
           +    K     V    G            + I  + 
Sbjct: 582 FKRNDKRTIYNVAYRDGKDGFYYIKRFNVTSITRDR 617


>gi|294992571|gb|ADF57412.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/133 (53%), Positives = 103/133 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDY 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ V
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 153 DFRDTYNEEDSEP 165
           DF+D Y+  + EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|213963463|ref|ZP_03391717.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sputigena Capno]
 gi|213953871|gb|EEB65199.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sputigena Capno]
          Length = 864

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 156/716 (21%), Positives = 284/716 (39%), Gaps = 77/716 (10%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            +N S +     +++  + +    ++ +L YA   I ERA+P + DGFKPV RRI+H++ 
Sbjct: 2   EENTSQNTASQGDSI--IKITGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLK 59

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI- 121
           E+       + K A +VG  + + HPHGD S+ D++V++ Q    +  LI  QGN+GNI 
Sbjct: 60  EL---DDGRYNKVANVVGNTM-QYHPHGDASIGDAIVQIGQ----KDLLIDTQGNWGNIL 111

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            GD AAA RY EAR+++ A  ++        +++ +Y+    EP+  P KFP LLA GT 
Sbjct: 112 TGDDAAAPRYIEARLSKFALDVV--FSPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGTE 169

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG++T I  HN  E+ EA++A +      +         PDFPT GI+  S      
Sbjct: 170 GIAVGLSTKILPHNFIELIEASIAYLKGKSFELY--------PDFPTAGIMDVS------ 215

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            Y  G  G RVR R  + ++ + + CI  TEIP+    + LI+ I +    K    ++ +
Sbjct: 216 GYNDGARGGRVRVRAKISQLDKSTLCI--TEIPFTTTTTSLIDSILKA-NEKGKIKIKKV 272

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            D +A +V I+         PD  +++++  +  ET       V+   + P  + +  +L
Sbjct: 273 DDNTAANVEIL-VHLPNGTSPDKTIDALYAFTACETAISPITCVIEDNK-PHFLTVSEVL 330

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +        +L +     +  ++ +     L+ + I      +       E   + +   
Sbjct: 331 RRSTDRTVNLLKQELEIELSELEMQWHNASLEKIFIREEMYIDFKNYTDRESLYEYLYKR 390

Query: 420 RFSLTENQVDAILNLRLRSLRKL-EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
                ++ +  I +  L  L ++      + +         KI++ +   K     +   
Sbjct: 391 FEPFKKDLLREITDDDLAKLTQIPMIRITRFDSYKADENILKIEADIEEVKNHLANLIDY 450

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
                E   K+   GR R T   V    +AT                 +  +R+ K +  
Sbjct: 451 AIAHFERLKKTYSKGRERKTEIRVFDTIEAT-----------------KVVVRNTKLYVN 493

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                        +        D +++ +  G  Y     +      +   +   +    
Sbjct: 494 RAEGFVGTGLRKDEYVGDCSDIDDVIVFTESGAMYVTKVADKQYIEKNIIHV--AVFKKD 551

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           ++  V   +Y                    + I  + +     +    E ++        
Sbjct: 552 DKRTVYNMIYKDGQTGF-----SYIKRFNVTGITRDKKY--ELIPQHKESRVLYFTANPN 604

Query: 659 DHVAVVGEN-RKL-----LIFSIDQIPEMSRGKGVRL----------QSYKDGGIS 698
               VV  N R+L     L + ID    + +G+GV+              K+ G+S
Sbjct: 605 GEAEVVTVNLRQLGTLRKLRWDIDFADTLIKGRGVKGNLVSKYAIKRIELKEKGVS 660


>gi|117654343|gb|ABK55602.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 223

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I+ L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES      V+ 
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRVVI 223


>gi|325969897|ref|YP_004246088.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta sp. Buddy]
 gi|324025135|gb|ADY11894.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta sp. Buddy]
          Length = 659

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 162/665 (24%), Positives = 260/665 (39%), Gaps = 74/665 (11%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +  +L YA   IKERAIPDL DGFKPV RRIIH + EM       F K A +VG  + + 
Sbjct: 9   KRNFLEYASYVIKERAIPDLGDGFKPVQRRIIHTLFEM---DDGKFHKVANVVGWAM-RY 64

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+Y++LV LA         I  QGNFG ++ GDSAAA RY E R+   A+ +L 
Sbjct: 65  HPHGDSSIYEALVNLA----NCDLFIERQGNFGNSLTGDSAAAARYIECRLLPFAKKVLY 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             + +  +F D+Y+  + EPVVFP+K P +L  G SGIAVGM+T I  HN  E+ +A  A
Sbjct: 121 --NPELTEFVDSYDGRNQEPVVFPAKIPVVLIQGVSGIAVGMSTYILPHNPLEVLDAMAA 178

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +      +         PDF  GGI+        E YR GRG   VRA+    +     
Sbjct: 179 SLKGESYQLY--------PDFLGGGIVDV------EDYRDGRGSVSVRAKLNTTDPK--- 221

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++ E+PY      +I  + E     ++ +     ++   +   +     R+     +
Sbjct: 222 -RIIIEELPYGTTSEAMIRSVEEAAKKGKLKISS--INDYTAEKVNIEINLARNTYAQEI 278

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +D ET+  +N  V+    VP +M +  IL     H   VL          +  
Sbjct: 279 VDALYAYTDCETKLSINPLVIRD-NVPTIMGVHEILDWHAQHLVVVLKAELELEKGHLLD 337

Query: 386 RVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++     + + I       I      E+  K V+       E     ++   +  L K+ 
Sbjct: 338 KLHARTLERIFIEERIYKRIEQKKSAEEVNKAVITGFKPFEEQLFRPVVLEDVERLLKIP 397

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             +I                      ++ +QI   + E++   +    +G   +   E+ 
Sbjct: 398 IRRISLFDIEKNR-------------EEIDQINDTVAEIERKLAN--LIGYALSYIAELK 442

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
                   Q     +   ++       R+L       +        +  I L   T DR+
Sbjct: 443 TMLGIKEHQRKTTIKTFELIDVKEVAERNLAVKYDPANGYLGYGVKTGNILLEVSTFDRV 502

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS---- 619
           L++  DG    + A                        + +    + T K L +      
Sbjct: 503 LIIRKDGTYQVIDAPEKEFVGKGLLYCGYAEKTELANLVFSVIYQEKTYKYLFLKRCQIV 562

Query: 620 ------------KGNAFIVEESEIIA-------NTRKGKTFL--KVSSEEKMKLVVKVTG 658
                       +GN  +V+ S             + G   L  K    + +   VK  G
Sbjct: 563 SYQLKKVYPLLPEGNFKLVKLSTYANAELTITYKPKAGLRILEEKFYFSDYLVKNVKANG 622

Query: 659 DHVAV 663
             +AV
Sbjct: 623 VRIAV 627


>gi|332880940|ref|ZP_08448610.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332681114|gb|EGJ54041.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 911

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 144/637 (22%), Positives = 247/637 (38%), Gaps = 57/637 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T   +++    L    +  +L YA   I ERA+P + DGFKPV RRI+H+M  M    
Sbjct: 28  PETSPHDSITH-HLSGMYQNWFLDYASYVILERAVPHINDGFKPVQRRILHSMKRM---D 83

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAA 127
              + K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GDSAA
Sbjct: 84  DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDSAA 138

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+
Sbjct: 139 APRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 196

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           ++ I  HN+ EIC+AA+  + +    +         PDF TGG I  S+      Y  G 
Sbjct: 197 SSKILPHNLNEICDAAVNYLHDEPFQLY--------PDFLTGGSIDVSK------YNDGG 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  V+ R  + ++   +  I   EIPY    + LI+ I + I   +I  +  + D +A 
Sbjct: 243 RGGVVKVRAKITKIDNKTLAI--REIPYGKTTTTLIDSILKAIEKGKIK-VRKVEDNTAA 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +V I+       +  D  +++++  +D E     N  V+   + P  + +  +LK  + +
Sbjct: 300 EVEIL-VHLTPGVSSDKALDALYAFTDCEVSISPNCCVIDD-KKPCFLTVSEVLKRSVDN 357

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTEN 426
              +L +    R   +   +       I                            LT  
Sbjct: 358 TLGLLRKELLIRKGELQESLHFASLEKIFIEERIYKDRNFEQAKDMDAACAHIDERLTPF 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
               I  +    + KL + ++                L  +  +  + IA    E+  I 
Sbjct: 418 YPQMIREVTQDDILKLMDIKM-------------ARILKFNKDKANDAIARMKDEIARID 464

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
               ++      +  + +A          E      +++ +    + K +          
Sbjct: 465 RDLDNMVEVTCNWFRMLKAKYGDEHPRHTELRNFDTIVATKVVEANEKLYINREEGFIGT 524

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
                +   +    D  ++   DG    +   +         +           +I+ A 
Sbjct: 525 SLKKDEFIANCSDLDDAIIFYRDGTYKVIRISDKTFVGETERSKAE----KKKAEIIHAA 580

Query: 607 VYDSTCK---LLVVSSKG-----NAFIVEESEIIANT 635
           V+    K     V    G            + I  + 
Sbjct: 581 VFKRNDKRTIYNVAYRDGKDGFYYIKRFNVTSITRDR 617


>gi|1296985|emb|CAA64977.1| DNA gyrase subunit A [Sinorhizobium meliloti]
          Length = 148

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 115/148 (77%), Positives = 127/148 (85%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRIIHAMSEMGL   ++FKK ARIVG+VIGK HPHGDQSVYD+LVRLAQ F 
Sbjct: 1   RDGLKPVHRRIIHAMSEMGLRPNSSFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           QRYP++ GQGNFGNIDGD+AAAYRYTEA+MT+VA L+L+G   DAVDFR TYNEED EP 
Sbjct: 61  QRYPVVDGQGNFGNIDGDNAAAYRYTEAKMTEVAALLLEGSTLDAVDFRPTYNEEDQEPT 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P  FPNLLANG SGIAVGMAT+IP H
Sbjct: 121 VLPGAFPNLLANGASGIAVGMATNIPPH 148


>gi|117654281|gb|ABK55571.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +++I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DVTIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++ 
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|319900295|ref|YP_004160023.1| DNA topoisomerase IV subunit A [Bacteroides helcogenes P 36-108]
 gi|319415326|gb|ADV42437.1| DNA topoisomerase IV subunit A [Bacteroides helcogenes P 36-108]
          Length = 881

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 137/678 (20%), Positives = 247/678 (36%), Gaps = 65/678 (9%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFAL----EERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           M  D     +     ++K  +++  L    +  +L YA   I ERA+P + DG KPV RR
Sbjct: 1   MSEDFNEEHSDYKPADIKDTNVKHQLSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I+H+M  M       + K A IVG  + + HPHGD S+ D+LV+L Q    +  L+  QG
Sbjct: 61  ILHSMRRM---EDGRYNKVANIVGHTM-QFHPHGDASIADALVQLGQ----KDLLVDCQG 112

Query: 117 NFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           N+GNI  GDSAAA RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP L
Sbjct: 113 NWGNILTGDSAAASRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLL 170

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           LA G  GIAVG+++ I  HN  E+C+A++  +      +         PDF TGG I  S
Sbjct: 171 LAQGVEGIAVGLSSKILPHNFNELCDASIRYLHKEGFKLY--------PDFQTGGSIDVS 222

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           +      Y  G  G  VR R  +E++   +  I   EIPY    + + + I +     +I
Sbjct: 223 K------YNDGERGGTVRVRSKIEKIDNKTLAI--KEIPYGKTVASVCDSIVKASEKGKI 274

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             +  + D ++  V I+       +  D  +++++  +D E     N  V+   + P  +
Sbjct: 275 K-IRKVEDLTSGSVEIL-VHLAAGVSSDKTIDALYAFTDCEVSISPNCCVIDDQK-PHFL 331

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY-LNIDEIIAIIRNEDKPK 414
            +  +L++ + +  ++L      R   I   +       I     I +     + +    
Sbjct: 332 TVSDVLRKSVDNTLDLLRLELEIRRNEIRESLHFASLEKIFIEERIYKDKEFEQAKSMDA 391

Query: 415 PVMVSRFSLTENQVDAILNLR----LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                   LT      I  +     LR +       +K   D       ++ S +    +
Sbjct: 392 ACEHIDRRLTPYYPTFIREVTKEDILRLMEIKMARILKFNSDKAEELIARMKSDIEEIDR 451

Query: 471 QWNQI----ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
               I        R +K+ + K         +F  +         + +        + + 
Sbjct: 452 HLANIVEYTVDWYRMLKDKYGKGFPRRTELRSFDTIEATKVIEANEKLYINREEGFIGTG 511

Query: 527 RG------WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
                       +    +      +      +            +   + K         
Sbjct: 512 LKKDEFIGNCSPIDDVIIFFRDGKYIITPVSEKKFVGKNILYANIFKKNDKRTIYNVCYR 571

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK----GNAFIVEE-------- 628
               G     +  +                  ++   ++          V          
Sbjct: 572 DGKEGTSYIKRFAVTSVVRDREYDVTQGTPDSRITYFTANPNGEAEVIKVTLKPNPRIRR 631

Query: 629 ----SEIIANTRKGKTFL 642
                +  A   KG+  +
Sbjct: 632 IIFEEDFSAINIKGRQAM 649


>gi|117654279|gb|ABK55570.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654283|gb|ABK55572.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654285|gb|ABK55573.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654287|gb|ABK55574.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654291|gb|ABK55576.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654307|gb|ABK55584.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
 gi|117654309|gb|ABK55585.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
 gi|117654341|gb|ABK55601.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 223

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++ 
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|193735142|gb|ACF20080.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 109/141 (77%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD  VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSPVYYTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|117654265|gb|ABK55563.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654269|gb|ABK55565.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654271|gb|ABK55566.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654273|gb|ABK55567.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654275|gb|ABK55568.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654277|gb|ABK55569.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654311|gb|ABK55586.1| DNA gyrase subunit A [Bacillus sp. 3EC2A3]
          Length = 223

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++ 
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|288801298|ref|ZP_06406752.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331681|gb|EFC70165.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 906

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 141/587 (24%), Positives = 244/587 (41%), Gaps = 44/587 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +LAYA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQGWFLAYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV++ Q    +  LI  QGN+GNI  GD AAA RY EAR++Q A
Sbjct: 97  TM-QFHPHGDASIGDALVQMGQ----KNLLIDMQGNWGNILTGDRAAAPRYIEARLSQFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EP+  P+KFP LLA G  GIAVG+++ I  HN  EIC
Sbjct: 152 LDVV--FNPKTTNWQLSYDGRNQEPITLPAKFPLLLAQGAEGIAVGLSSKILPHNPNEIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +   E  +         PDFPTGG I  S+      Y  G  G  ++ R  +  
Sbjct: 210 QAAISYLRGEEFQLY--------PDFPTGGSIDVSK------YNDGLRGGSIKVRAKI-- 253

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               S  +V+ EIPY    + LI+ I + I   +I   + + D +A +V I        +
Sbjct: 254 EKLDSKTLVIREIPYSKTTTSLIDSILKAIDKGKIK-AKKVDDNTAAEVEIQ-IHLASGV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  SD E     N  V+   + P+ M +  +L   +     +L +    R 
Sbjct: 312 SSDKTIDALYAFSDCEVNISPNCCVIEDQK-PRFMTVSEVLCHSVDSTMGLLRKELQIRK 370

Query: 381 QAIDRRVEILKGLLIAY-LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
             +  ++       I     I +     +  +    +      L   + D I  +    +
Sbjct: 371 DELLSQLFFASLESIFIEERIYKDKKFEQAANVDAAIKHIDERLEPFKKDFIREITRDDI 430

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L E +++               L  + ++    IA   +E+K+I  K   +      +
Sbjct: 431 LHLLEIKMQ-------------RILKFNKEKAEELIAKMKQEIKDIDYKLAHMVDVTIEW 477

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               +         + E      + + +    + K +               +   +   
Sbjct: 478 FTFLKEKYGKDHHRLTEIRNFDTIEATKVVEANEKLYINRQDGFIGTSLKKDEFVCNCSD 537

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            D I++   DG    +     +    +   +Q+    +        +
Sbjct: 538 IDDIIIFYKDGLYKIIKVAEKIFVGKNVLHVQVFKKNDKRTIYNAVY 584


>gi|117654345|gb|ABK55603.1| DNA gyrase subunit A [Bacillus halodurans]
          Length = 222

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 163/224 (72%), Gaps = 2/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEARM++++  +++ +++D
Sbjct: 1   DSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRYTEARMSKISMELVRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG SGIAVGMAT+IP H + E+ +  LAL  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATNIPPHQLGEVIDGVLALSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +IS+ +L+E+I GPDFPTG  I+  R  I ++Y+ GRG   +RA+  +EE   G   I+V
Sbjct: 121 DISVPELMEHIPGPDFPTGAEIL-GRSGIRKAYQTGRGSITLRAKTEIEEH-HGKQRIIV 178

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            EIPYQV K++LIEKIAEL+  K+I  + D+RDES  +   ++ 
Sbjct: 179 HEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMRIVI 222


>gi|187734641|ref|YP_001876753.1| DNA topoisomerase (ATP-hydrolyzing) [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424693|gb|ACD03972.1| DNA topoisomerase (ATP-hydrolyzing) [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 697

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 137/505 (27%), Positives = 227/505 (44%), Gaps = 46/505 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+HAM  +       + K A IVG+ + K HPH
Sbjct: 6   FLDYASYVILERAVPKINDGFKPVQRRILHAMDRL---DDGRYNKVANIVGDTM-KFHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD+S+ D+LV L Q    +  LI  QGN+GNI  GD AAA RY EAR T  A  ++    
Sbjct: 62  GDRSIADALVGLGQ----KGLLIDTQGNWGNILTGDPAAASRYIEARFTSFARDVV--FS 115

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+ EA++A + 
Sbjct: 116 PKVTEWQLSYDGRNKEPVSLPVKFPLLLAQGAEGIAVGLSSKILPHNFNELIEASIAYLR 175

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                      + + PDFPTGG++  +           RG  RVR R  +    +    I
Sbjct: 176 G--------QPFQLLPDFPTGGVMDAT-----NYRDGERGTGRVRIRARILTESKKLLRI 222

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
             TEIP+ V    LI+ I       +I  +  I D +A+ V I+        DP+   ++
Sbjct: 223 --TEIPFGVTTEILIDSIVSAAEKGKIK-IARIEDNTAQHVDIL-VHLPAGADPEQTRKA 278

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +F  S  E     N  V+   + P+ M +  IL+      +E+L +    R++ ++    
Sbjct: 279 LFAFSACEVSISPNACVIVEEK-PRFMCVSDILRYNTDSTKEILRQEQEIRLKELNEAWH 337

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------------LTENQVDAILNLRL 436
                 I     + I   I + +  + V+ +               +T + +  +  +++
Sbjct: 338 QASLEKIFI--ENRIYLSIEDSETWEEVLGTIDRELQPFASRLRAPITRDDLVRLTEIKI 395

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + + K + ++    +  L  + E       +  Q           +++ +  +       
Sbjct: 396 KRISKFDAFKADQHIRQLEEDIE---QTQKNLNQLTKFTIRWFEALRKKYGAAYPRKTEI 452

Query: 497 TTFCEVSRADKATLQQAMIEKEPIT 521
           ++F  V+RA  A   + +   +   
Sbjct: 453 SSFGSVNRAQVAVANETLYIDDEGF 477


>gi|305666739|ref|YP_003863026.1| DNA topoisomerase IV subunit A [Maribacter sp. HTCC2170]
 gi|88708963|gb|EAR01197.1| DNA topoisomerase IV subunit A [Maribacter sp. HTCC2170]
          Length = 892

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 151/743 (20%), Positives = 286/743 (38%), Gaps = 119/743 (16%)

Query: 6   ISNSNTLVEENVKAVSLRF----------------ALEERYLAYALSTIKERAIPDLRDG 49
           + ++  L +E  +   +                    ++ +L YA   I ERA+P + DG
Sbjct: 1   MEDNEELNQELNEDQPIEEGSGIDDSQDALTKVTGMYKDWFLDYASYVILERAVPAIEDG 60

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
           FKPV RRI+H++ E+       + K A +VG  + + HPHGD S+ D++V++ Q    + 
Sbjct: 61  FKPVQRRILHSLKEL---DDGRYNKVANVVGHTM-QYHPHGDASIADAMVQIGQ----KD 112

Query: 110 PLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
            LI  QGN+GNI  GD AAA RY EAR+++ A  ++        +++ +Y+    EPV  
Sbjct: 113 LLIDTQGNWGNILTGDRAAASRYIEARLSKFALDVV--FSPKITEWQLSYDGRKKEPVNL 170

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPT 228
           P KFP LLA G  GIAVG++T +  HN  E+ +A++  +      +         PDFPT
Sbjct: 171 PVKFPLLLAQGAEGIAVGLSTKVLPHNFNELIDASIKHLKGQRFKLY--------PDFPT 222

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
            GII         +Y  G  G ++R R  + +  + +  +V+ EIPY    S LI+ I +
Sbjct: 223 AGIIDV------NNYNDGLRGGKIRVRARMSQKDKNT--LVINEIPYGTNTSSLIDSILK 274

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
               K    ++ I D +A DV I+       + PD  +++++  +  E+       ++  
Sbjct: 275 A-NDKGKIKIKKIEDNTAADVEIL-VHLPSGISPDKTIDALYAFTSCESSISPLSCIIED 332

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAI 406
            + P  + +  +LK+      E+L      ++  ++ +     L+ + I      +I   
Sbjct: 333 NK-PIFIGVSEMLKQSTDLTVELLKAELEIQLSELEEQWHFASLERIFIENRIYRDIEEE 391

Query: 407 IR--------NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                     ++         + ++TE  +  +  +R++ + K +  + +  LD+L  + 
Sbjct: 392 ETWEGVISAIDKGLKPHTKHLKRAVTEEDIVRLTEIRIKRISKFDIDKAQQYLDSLEEKI 451

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++   L +     +      + +K  + K  +       F ++           +    
Sbjct: 452 AEVKHHLAN---LIDFAIDYFKNLKTKYGKGRERKSEIRVFDDIEATKVVIRNTKLYVNR 508

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
               V ++                                  D I++ + DGKA      
Sbjct: 509 EEGFVGTSLRRDE---------------------YVTDCSDIDDIIVFTKDGKAMITKVD 547

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG--NAFIVEESEIIANT- 635
           +      +   + +    +         +Y            G         + +  +  
Sbjct: 548 SKTFIGKNIIHVAVFKKKDKRTTYN--MIYKDG-------KGGPTYIKRFNVTSVTRDRL 598

Query: 636 ---RKGKTFL-------KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSR 683
                GK            + E ++  V          VG  +K L + +D   +    R
Sbjct: 599 YDLTPGKPLTVVYYFSANPNGEAEVVTVNLRQ------VGSIKK-LKWDVDFADVLIKGR 651

Query: 684 G-KG-------VRLQSYKDGGIS 698
             KG       V+    K+ G+S
Sbjct: 652 ASKGNIVTKYTVKRIELKEKGVS 674


>gi|163756899|ref|ZP_02164007.1| DNA topoisomerase IV subunit A [Kordia algicida OT-1]
 gi|161323135|gb|EDP94476.1| DNA topoisomerase IV subunit A [Kordia algicida OT-1]
          Length = 880

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 158/747 (21%), Positives = 293/747 (39%), Gaps = 111/747 (14%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N   ++ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H+M ++     
Sbjct: 16  NNNSQDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKDL---DD 70

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAA 128
             + K A IVG  + + HPHGD S+ D++V++ Q    +  LI  QGN+GNI  GD AAA
Sbjct: 71  GRYNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDRAAA 125

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RY EAR+++ A  ++        D++ +Y+   +EPV  P KFP LLA G  GIAVG++
Sbjct: 126 SRYIEARLSKFALDVVY--SPKITDWQLSYDGRKNEPVNLPVKFPLLLAQGAEGIAVGLS 183

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T I  HN  E+ +A++  +      I         PDFPT GI+  S      +Y  G  
Sbjct: 184 TKILPHNFIELIDASIKHLQGKRFQIY--------PDFPTSGIMDVS------NYNDGLR 229

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           G +VR R  + ++ + +  +V+TEIP+    + LIE I +    K    ++ I D +A D
Sbjct: 230 GGKVRVRAKISQLDKNT--LVITEIPFGTNTTSLIESILKA-NDKGKIKIKKIEDNTAAD 286

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           V I+      ++ PD  +++++  ++ E+     +  +     P  + +  +L+    H 
Sbjct: 287 VEIL-VHLPNNISPDKTIDALYAFTNCESSISP-LGCIIYDNKPLFIGVSEMLRRSTDHT 344

Query: 369 REVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPK--------PVMV 418
            E+L      ++  +  +     L+ + I      EI      E             +  
Sbjct: 345 VELLKSELEIQLGELQEQWHFASLERIFIENRIYREIEEEETWEGVINAIDEGLKPHITH 404

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            + ++T   +  +  +R++ + K +  + + ++D L     ++   L +     +     
Sbjct: 405 LKRAVTVEDITRLTEIRIKRISKFDIDKAQQKIDALEETIAEVRHHLAN---LIDYAVSY 461

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +K+ + +  +       F +V           +        + ++            
Sbjct: 462 FTRLKKQYGEGKERKTEIRIFDDVDARKVVIRNTKLYVNREEGFIGTSLKKDE------- 514

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                                 D I+  + DGK       +      +   +   I    
Sbjct: 515 --------------YVADCADIDDIIAFTRDGKMQVTKVDSKTFIGKNIIHV--AIFKKK 558

Query: 599 NQDIVTAFVYDSTCKLLVVSSKG--NAFIVEESEIIA-----NTRKGKTFL------KVS 645
           ++  +   +Y            G         + +        TR  K  +        +
Sbjct: 559 DKRTIYNMIYRDG-------KGGPSYIKRFAVTSVTRGKEYDLTRGTKGSMVTYFSANPN 611

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRGKGVRL----------QSYK 693
            E ++  ++      +       K L + ID   +    R  GV+              K
Sbjct: 612 GEAEIVTILLRQAGSI-------KKLKWDIDFADLSIKGR--GVKGNLVTKYAIKRIELK 662

Query: 694 DGGISDVICFKI--CEGLTWIDSAGRS 718
           + G+S +   KI   E +  ++  GR 
Sbjct: 663 EKGVSTLKPRKIWFDETVQRLNVDGRG 689


>gi|61651648|dbj|BAD91163.1| GyrA protein [Campylobacter fetus subsp. fetus]
          Length = 142

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/142 (61%), Positives = 114/142 (80%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRRI++AM+++G+   + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R P +
Sbjct: 1   VHRRILYAMNDLGVGSRSPYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQNFSMRVPAV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG++DGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ 
Sbjct: 61  DGQGNFGSVDGDGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARV 120

Query: 173 PNLLANGTSGIAVGMATSIPSH 194
           PNLL NG+SGIAVGMAT+IP H
Sbjct: 121 PNLLLNGSSGIAVGMATNIPPH 142


>gi|313205728|ref|YP_004044905.1| DNA topoisomerase (ATP-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
 gi|312445044|gb|ADQ81399.1| DNA topoisomerase (ATP-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
 gi|315022876|gb|EFT35900.1| DNA topoisomerase IV subunit A [Riemerella anatipestifer RA-YM]
 gi|325336831|gb|ADZ13105.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Riemerella anatipestifer RA-GD]
          Length = 857

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 155/704 (22%), Positives = 268/704 (38%), Gaps = 89/704 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +    ++ +L YA   I +RAIP + DGFKPV RRI+H+M E+       + K A IVG 
Sbjct: 14  VSRLYKDWFLDYASYVILDRAIPSIFDGFKPVQRRIMHSMKEL---EDGRYNKVANIVGN 70

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + K HPHGD S+ D++V++ Q    +  LI  QGN+GN+  GDSAAA RY EAR+T  A
Sbjct: 71  TM-KYHPHGDASITDAMVQIGQ----KELLIDTQGNWGNVYTGDSAAAARYIEARLTPFA 125

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +     +  +Y+  ++EP+  P KFP LLA G  GI VG++T +  HN  E+ 
Sbjct: 126 LEVV--FNPKTTHWVKSYDGRNNEPIDLPVKFPLLLAQGVEGIGVGLSTKVMPHNFNELI 183

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA++A +   +  +         PDF TGG++  S      +Y  G  G R+RAR  + +
Sbjct: 184 EASIAYLKGKKFQLY--------PDFMTGGMLDVS------NYNDGERGGRLRARARIIQ 229

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
             + + CI  TE+P+    S LI+ I +     +I + +   + S +    +    N  +
Sbjct: 230 KDKHTLCI--TELPFSKTTSDLIDSIIKANEKGKIKIKKIEDNTSDQVE--INIHLNNDV 285

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
            PD ++++++  +D E     N  V+  G  P  + +  ILK    H   +L R     +
Sbjct: 286 SPDKMIDALYAFTDCEISISPNACVIV-GDKPMFLSVSEILKRNTDHTVSLLKRELEIEL 344

Query: 381 QAIDRRVEI--LKGLLIAYLNIDEI-----IAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
             ++ +     L+ + I      EI        +            +  + E   + I+ 
Sbjct: 345 GELEDKWHFASLERIFIENEIYQEIKGKDSKEAVYEAINLALQPFIKNLMREVVTEDIIR 404

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L      ++  Y     L+N+ A + K++ + +               +K+ F K  +  
Sbjct: 405 LTELPFMRISRYDRDKALENIAALEGKMEEVKHHLAHLVEYAINYFLNIKKKFGKDKERR 464

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
                F  +     A   +          + ++                           
Sbjct: 465 TELRVFDTIDATKVAVANEKFYVNRAEGFIGTSLRKDE---------------------Y 503

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  D I+    DG                     +    +     V   +Y     
Sbjct: 504 VFDCSDIDDIITFRKDGVMQVTKVEPKTFVGKDIIHTGVWKKNDKRT--VYNMIYREGK- 560

Query: 614 LLVVSSKGNAFIVEESEIIANTR-------KGKTFL----KVSSEEKMKLVVKVTGDHVA 662
               +          + I  NT        KG   L      + E ++  V+      + 
Sbjct: 561 ----TGPYYMKRFSVTSITRNTEYPLASEVKGSEVLYFSANPNGEAEVVTVLLKPNARI- 615

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKG-------VRLQSYKDGGIS 698
                 K +      +    R  +G       V+    K+ G+S
Sbjct: 616 ---RKNK-IEIDFSDLAIKGRNSRGNLVTKYAVKKVDLKEEGVS 655


>gi|295086380|emb|CBK67903.1| DNA topoisomerase IV subunit A [Bacteroides xylanisolvens XB1A]
          Length = 881

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 149/711 (20%), Positives = 267/711 (37%), Gaps = 81/711 (11%)

Query: 8   NSNTLVEENVKAVSLRFA---------LEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           N  T    + K    R            +  +L YA   I ERA+P + DG KPV RRI+
Sbjct: 6   NEITEEHSDYKPADARDESVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRIL 65

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           H+M  +       + K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+
Sbjct: 66  HSMKRL---DDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNW 117

Query: 119 GNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           GNI  GD AAA RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA
Sbjct: 118 GNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLA 175

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            G  GIAVG+++ I  HN  E+C+A+++ +   E  +         PDF TGG I  ++ 
Sbjct: 176 QGVEGIAVGLSSKILPHNFNELCDASISYLHGEEFQLY--------PDFQTGGSIDVAK- 226

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
                Y  G  G  V+ R  + ++   +  I  TEIPY    S +I+ I + +   +I  
Sbjct: 227 -----YNDGERGGAVKVRAKINKIDNKTLAI--TEIPYGKTTSTVIDSILKAVDKGKIK- 278

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           +  + D +A +V I+          D  +++++  +D E     N  V+   + P  + +
Sbjct: 279 IRKVDDNTAANVEIL-VHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSK-PHFLTV 336

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PV 416
             +L++   +  ++L +    +   I   +       I                      
Sbjct: 337 SKVLRKSADNTLDLLKQELEIKKNEILEALHFASLEKIFIEERIYKDKEFEQSKDMDAAC 396

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 LT      I  +    + KL E ++                L  +  +    IA
Sbjct: 397 AHIDERLTPYYPKFIREVTKEDILKLMEIKMG-------------RILKFNSDKADELIA 443

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
               EV EI +    +      + ++ +           E      + + +    + K +
Sbjct: 444 RMKEEVAEIDNHLAHIVDYTVNWYQMLKNKYGKNFPRRTELRNFDTIEAAKVVEANEKLY 503

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
                          +        D +++   DGK    P  +          + + +  
Sbjct: 504 INREEGFIGTALKKDEFVACCSDIDDVIIFFRDGKYIVTPVADKK--FVGKNVLYVNVFK 561

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----------LKVS 645
            +++  +    Y    +    ++         + ++ +     T               +
Sbjct: 562 KNDKRTIYNIAYRDGKEG---TT--YVKRFAVTSVVRDREYDVTLGTPESRITYFSANPN 616

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYK 693
            E ++  V       V       + +IF  D  ++    R  +GV L    
Sbjct: 617 GEAEIIKVTLKPNPRV-------RRIIFEHDFSEVSIKGRQARGVILTRLP 660


>gi|295394216|gb|ADG03719.1| DNA topoisomerase IV subunit A [Streptococcus cristatus]
 gi|295394218|gb|ADG03720.1| DNA topoisomerase IV subunit A [Streptococcus gordonii]
 gi|295394238|gb|ADG03730.1| DNA topoisomerase IV subunit A [Streptococcus sanguinis SK1]
          Length = 151

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 72/151 (47%), Positives = 109/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++D V F   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAGYLLQDIEKDTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|193735144|gb|ACF20081.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 110/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYYTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|303236883|ref|ZP_07323462.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella disiens
           FB035-09AN]
 gi|302483051|gb|EFL46067.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella disiens
           FB035-09AN]
          Length = 990

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 137/571 (23%), Positives = 249/571 (43%), Gaps = 42/571 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A I G 
Sbjct: 105 LSGMYKNWFLDYASYVILERAVPHIDDGLKPVQRRILHSMKRM---DDGRYNKVANIAGH 161

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV++ Q    +  LI  QGN+GNI  GD AAA RY E+R+++ A
Sbjct: 162 TM-QFHPHGDASICDALVQMGQ----KDLLIDTQGNWGNIFTGDRAAAPRYIESRLSKFA 216

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +    +++ +Y+  + EPV  P+KFP LLA G  GIAVG+++ I  HN+ EIC
Sbjct: 217 LETV--FNPKTTEWQLSYDGRNKEPVTLPAKFPLLLAQGAEGIAVGLSSKILPHNMVEIC 274

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +            + + PDFPTGG I   + +  +  R G    +VRA+    +
Sbjct: 275 DAAINYLKEK--------PFALYPDFPTGGSIDVEKYN--DGQRGG--TLKVRAKVEKID 322

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  +V+ E+P+    S L E I + +   ++  +  + D +A +V I L       
Sbjct: 323 NKT----LVIREVPFTKTASSLAESITKAVEKGKLK-IRKVEDMTASEVEIQL-HLTPGT 376

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  M++++  +D E     N  V+S  + PQ + +  +L+  + H + +L R    R 
Sbjct: 377 SSDKTMDALYAFTDCEVSISPNCCVISDNK-PQFLTISDVLRHSVNHTQGLLRRELEIRK 435

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             ++ ++                +  I  E++         + T +     ++ +L   +
Sbjct: 436 AELEEQLFFSS------------LERIFIEERIYKERGFETAKTMDDAIKFVDGKLEPFK 483

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           K    ++K E    L E +    L  +  +    +     E+ EI    +++ R    + 
Sbjct: 484 KNFIREVKREDILRLMEIKMQRILKFNKDKADELLKNIQAEIAEINKDLSEMVRVTIEWF 543

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           +  +           E +    +++ +    + K +          +    +   +    
Sbjct: 544 KHLKTKYGKDYPRKTEIKSFDTIVAAKVVDANEKLYIDRKGGFIGTDLKKAEFVQNCSNL 603

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           D +++   DGK   +   + +        +Q
Sbjct: 604 DDVIVFYRDGKYKVVHIADKVFVDKGVIHVQ 634


>gi|302345857|ref|YP_003814210.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           ATCC 25845]
 gi|302149088|gb|ADK95350.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           ATCC 25845]
          Length = 908

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 133/571 (23%), Positives = 242/571 (42%), Gaps = 42/571 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQLGQ----KDLLIDMQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC
Sbjct: 152 LETV--FNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +   E ++         PDFPTGG I  S+      Y  G+ G  ++ R  V  
Sbjct: 210 DAAISYLRGEEFNLY--------PDFPTGGSIDVSK------YNDGQRGGVLKVRAKV-- 253

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  +V+ E+P+    + L E I + +   ++  +  + D +A +V I L       
Sbjct: 254 EKLDNKTLVIREVPFTKTANTLQESITKAVEKGKLK-IRRVEDMTASEVEIQL-HLTPGT 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P+ + +  +L+    H + +L      R 
Sbjct: 312 SSDKTIDALYAFTDCEINISPNCCVIRDNK-PEFLTVSDVLRNSAEHTKALLKLELEIRK 370

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             ++ ++       I   +                            V + ++ +L   +
Sbjct: 371 HELEEQLFYNSLERIFIEDRIYKERKFETAKDIDE------------VVSFVDSKLEPYK 418

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           K    ++  +    L E +    L  +  +    I     E+ EI    +++ R    + 
Sbjct: 419 KTFIREVTRDDIIRLLEIKMQRILKFNKDKADELIQKIKAEIAEIDKDLSEMVRVTIEWF 478

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              +    +      E +    +++ +    + K +               +   +    
Sbjct: 479 THLKEKYGSDHPRRTEIKSFDTIVAAKVVDANEKLYIDRQEGFIGTGLKKAEFVQNCSDL 538

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           D +++   DGK   +   + +        +Q
Sbjct: 539 DDVIIFYRDGKYKVIRIADKVFVGKGVLHVQ 569


>gi|329956024|ref|ZP_08296795.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides clarus YIT
           12056]
 gi|328524783|gb|EGF51837.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides clarus YIT
           12056]
          Length = 904

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 147/699 (21%), Positives = 264/699 (37%), Gaps = 61/699 (8%)

Query: 2   GVDNISNSNTLVEENV-KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           G +  S+       +V     L    +  +L YA   I ERA+P + DG KPV RRI+H+
Sbjct: 19  GSEGHSDYKPADTNDVSIKHQLSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHS 78

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  M       + K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GN
Sbjct: 79  MRRM---EDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGN 130

Query: 121 I-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           I  GDSAAA RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G
Sbjct: 131 ILTGDSAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQG 188

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVG+++ I  HN  E+C+A++  +   E  +         PDF TGG I  S+   
Sbjct: 189 VEGIAVGLSSKILPHNFNELCDASVKYLHKEEFKLY--------PDFQTGGNIDVSK--- 237

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
              Y  G  G  VR R  +      +  +V+ EIPY    + + + I +     +I  ++
Sbjct: 238 ---YNDGERGGAVRVRAKI--EKVDNKTLVIREIPYGKTVASVCDSIVKASEKGKIK-IK 291

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            + D ++  V I+       +  D  +++++  +D E     N  V+   + P  + +  
Sbjct: 292 KVEDLTSGSVEIL-VHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDEQK-PHFLTVSA 349

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY-LNIDEIIAIIRNEDKPKPVMV 418
           +LK+ + +   +L +    R   I   +       I     I +     + ++       
Sbjct: 350 VLKKSVDNTLALLRQELEIRKNEILESLHFSSLEKIFIEERIYKDKEFEQAKNMDAACEH 409

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               LT      I  +           +        +     +    +  ++   ++  +
Sbjct: 410 IDERLTPYYPTFIREVT----------KEDILKLMEIKMARILKFNSDKAEELIARMKAD 459

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           I E+    +   +       +  + +           E      + S +    + K +  
Sbjct: 460 IEEIDRHLANIVEY---TVDWFRMLKEKYGKGFPRRTELRNFDTIDSTKVVEANEKLYIN 516

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                        +   +    D +++   DG+    P  +     G       +   N 
Sbjct: 517 REEGFIGTGLKKDEFIANCSDLDDVIIFFRDGRYIITPVAD-KKFVGKNILYANVFKKND 575

Query: 599 NQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF---LKVSSEEKMKLV 653
            + I              +   +  +     E ++   T   +        + E ++  V
Sbjct: 576 KRTIYNVVYRDGKEGTHYIKRFAVTSVVRDREYDVTQGTPDSRIVYFTANPNGEAEVIKV 635

Query: 654 VKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRL 689
                  +       + +IF  D  QI    R   G  L
Sbjct: 636 TLKPNPRI-------RRIIFEEDFSQINIKGRQAMGNIL 667


>gi|1296444|emb|CAA64979.1| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
          Length = 148

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 118/148 (79%), Positives = 128/148 (86%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRIIHAMSEMG+   +AFKK ARIVG+VIGK HPHGDQSVYD+LVRLAQ F 
Sbjct: 1   RDGLKPVHRRIIHAMSEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           QRYP++ GQGNFGNIDGD AAAYRYTEARMT VA L+L+G+ EDAVDFR TYNEED EPV
Sbjct: 61  QRYPIVDGQGNFGNIDGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P  FPNLLANG SGIAVGMAT+IP H
Sbjct: 121 VLPGAFPNLLANGASGIAVGMATNIPPH 148


>gi|190888606|gb|ACE95928.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888612|gb|ACE95931.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888618|gb|ACE95934.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888620|gb|ACE95935.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888622|gb|ACE95936.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888630|gb|ACE95940.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888638|gb|ACE95944.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888642|gb|ACE95946.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888644|gb|ACE95947.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888646|gb|ACE95948.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888654|gb|ACE95952.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 151

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/150 (50%), Positives = 110/150 (73%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA   I+ERA+PD+RDG KPV RRI++ M  +GL +  +++KSA  VGEVIGK HPHGD 
Sbjct: 2   YAKYIIQERALPDIRDGLKPVQRRILYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGDL 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y++LVR+ Q +    PLI  QGN G+IDGD+AAA RYTEAR++    L+L+ ++++ V
Sbjct: 62  SIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEARLSHYGNLMLENINKETV 121

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           +F + +++ + EP + PS  PNLL NG++G
Sbjct: 122 NFVNNFDDSEVEPTILPSLLPNLLVNGSTG 151


>gi|332829303|gb|EGK01957.1| hypothetical protein HMPREF9455_00079 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 908

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 135/565 (23%), Positives = 241/565 (42%), Gaps = 42/565 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            + L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A I
Sbjct: 44  QLHLSGMFQNWFLDYASYVILERAVPHITDGLKPVQRRIMHSMKRM---DDGRYNKVANI 100

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMT 137
           +G  + + HPHGD S+ D+LV+L Q    +  L+  QGN+GN+  GD AAA RY EAR++
Sbjct: 101 IGHTM-QFHPHGDASIGDALVQLGQ----KDLLVDCQGNWGNVFTGDGAAAPRYIEARLS 155

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + A  +L   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  
Sbjct: 156 KFALEVL--FNPKTTEWKPSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNFN 213

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C+AA+A +   E        + + PDF TGG I  S+      Y  G  G  V+ R  
Sbjct: 214 ELCDAAVAHLQGEE--------FTLYPDFQTGGYIDVSK------YNDGERGGSVKVRAK 259

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +      +  +V+++IPY    S ++E I +    K    +  + D +A++V I      
Sbjct: 260 IS--KLDNKTLVISDIPYGRTSSSVVESILKA-NDKGKIKIRKVDDITAQNVEIH-VHLA 315

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             +  D  +++++  +D E     N  V+   + P  + +  IL++   + R +L     
Sbjct: 316 AGVSSDKTIDALYAFTDCEISISPNCCVIEDNK-PYFLTVSRILRDTTENTRRLLKLELE 374

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
            +   ++  +                +  I  E++         ++  +     ++ RL 
Sbjct: 375 IQKSELEETLHFSS------------LEKIFIEERIYKDKEFENAVNMDAAVEHIDKRLA 422

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
              KL   ++  E    L E      L  +  +    IA    E++EI     ++     
Sbjct: 423 KFAKLFIREVTREDIMKLMEIRMGRILKFNSDKADELIARYKEEIEEIKHNIENITDYTI 482

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           ++  + +           E      + + +    + K +               +   + 
Sbjct: 483 SWYVMLKEKYGKNYPRKTEIRSFDTIEATKVVEANEKLYINREEGFIGTALKKDEYVCNC 542

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLS 582
              D I++   DGK   +   + + 
Sbjct: 543 SDIDDIIIFYKDGKYKIVKVSDKMF 567


>gi|117654295|gb|ABK55578.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654297|gb|ABK55579.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654299|gb|ABK55580.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654303|gb|ABK55582.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 163/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|295394232|gb|ADG03727.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 151

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 69/151 (45%), Positives = 110/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   
Sbjct: 61  MVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|189464414|ref|ZP_03013199.1| hypothetical protein BACINT_00755 [Bacteroides intestinalis DSM
           17393]
 gi|189438204|gb|EDV07189.1| hypothetical protein BACINT_00755 [Bacteroides intestinalis DSM
           17393]
          Length = 892

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 146/703 (20%), Positives = 270/703 (38%), Gaps = 61/703 (8%)

Query: 2   GVDNISNSNTLVEENVK-AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           G +  S+      ++VK    L    +  +L YA   I ERA+P + DG KPV RRI+H+
Sbjct: 19  GNEGHSDYKPADTKDVKAKYQLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHS 78

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  M       + K A IVG  + + HPHGD S+ D+LV+L Q    +  L+  QGN+GN
Sbjct: 79  MRRM---EDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLVDCQGNWGN 130

Query: 121 I-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           I  GD AAA RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G
Sbjct: 131 ILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQG 188

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVG+++ I  HN  E+C+A++  +   E  +         PDF TGG I  S+   
Sbjct: 189 VEGIAVGLSSKILPHNFNELCDASIRYLHEEEFKLY--------PDFQTGGSIDVSK--- 237

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
              Y  G  G  VR R  +E++   +  I   EIPY    + + + I +     +I  ++
Sbjct: 238 ---YNDGERGGAVRVRAKIEKIDNKTLAI--KEIPYGKTVANVCDSIVKASEKGKIK-IK 291

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            + D ++ +V I+       +  D  +++++  +D E     N  V+   + P  + +  
Sbjct: 292 KVEDLTSGNVEIL-VHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDDQK-PHFLTVSD 349

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY-LNIDEIIAIIRNEDKPKPVMV 418
           +L++ + +   +L +    R   I   +       I     I +     + +D       
Sbjct: 350 VLRKSVDNTLSLLRQELEIRKDEILESLHFASLEKIFIEERIYKDKEFEQAKDMDAACAH 409

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               LT      I  +           +        +     +    +  ++   ++  +
Sbjct: 410 IDERLTPYYPRFIREVT----------KEDILKLMEIKMGRILKFNSDKAEELIARMKAD 459

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           I E+    +   +       +  + +           E      + +++    + K +  
Sbjct: 460 IEEIDHHLANIVEY---TVDWYLMLKNKYGKNFPRRTELRNFDTIEASKVVEANEKLYIN 516

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                        +   +  + D +++   DG+    P  +     G       +   N 
Sbjct: 517 REEGFIGTGLKKDEFLCNCSSLDDVIIFFRDGRYLVTPVSD-KKFVGKNILYANVFKKND 575

Query: 599 NQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT---FLKVSSEEKMKLV 653
            + I            + +   +  +     E ++   T   +        + E ++  V
Sbjct: 576 KRTIYNVVYRDGKEGTQYIKRFAVTSIIRDREYDVTQGTPDSRITYFTANPNGEAEVIKV 635

Query: 654 VKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYK 693
                  V       + +IF  D   I    R  +G  L    
Sbjct: 636 TLKPNPRV-------RRIIFEEDFSDISIKGRQARGNILTKLP 671


>gi|282878744|ref|ZP_06287512.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella buccalis ATCC
           35310]
 gi|281299135|gb|EFA91536.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella buccalis ATCC
           35310]
          Length = 911

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 143/616 (23%), Positives = 255/616 (41%), Gaps = 52/616 (8%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV++ Q    +  L+  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQMGQ----KDLLVDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +     ++ +Y+  + EP+  P+KFP LLA G  GIAVG+++ I  HN+ EIC
Sbjct: 152 LDVV--FNPKTTHWQLSYDGRNKEPITLPAKFPLLLAQGAEGIAVGLSSKILPHNLNEIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EAA+  +   +  +         PDFPTGG I   +      Y  G+ G  ++ R  +  
Sbjct: 210 EAAIHYLRGEKFQLY--------PDFPTGGSIDVEK------YNDGQRGGTLKVRAKI-- 253

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  +V+ EIP+    + LI+ I   I   +I   + + D +A +V I        +
Sbjct: 254 EKLDNKTLVIKEIPFSKTTTTLIDSILRAIDKGKIK-AKKVDDNTAAEVEIQ-VHLAPGV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  SD E     N  V+   + P  + +  +L+  +     +L +    R 
Sbjct: 312 SSDKTIDALYAFSDCEINVSPNCCVIEDDK-PGFLTISDVLRHNVDSTMGLLRKELEIRK 370

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             +  ++                +  I  E++         +   + V A ++ RL   +
Sbjct: 371 NELLEQLFFAS------------LEKIFIEERIYKDKKFEEAKDLDSVVAHVDNRLEPFK 418

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                ++  +    L E +    L  +  +  + IA    ++K I      +      + 
Sbjct: 419 PNFIREVTRDDILRLLEIKMNRILKFNKDKANDFIARTKADIKSIDHDLAHMTDVTIHWF 478

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           E  R         + E      + + +    + K +               +   +    
Sbjct: 479 EFIRDKYGKDHPRLTEIRSFETIEATKVVEANEKLYIDRQEGFVGTGLKKNEFVCNCSDI 538

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D I++   DGK   +   + +    +   +   +   +++  +   VY           K
Sbjct: 539 DDIIIFYKDGKFKIIRVADKIFVGKNVIHV--QVFKKNDKRTIYNVVYQDG-------KK 589

Query: 621 GNAFIVEESEIIANTR 636
           G  FI     + + TR
Sbjct: 590 GTYFIKRF-NVTSITR 604


>gi|88802817|ref|ZP_01118344.1| DNA topoisomerase IV subunit A [Polaribacter irgensii 23-P]
 gi|88781675|gb|EAR12853.1| DNA topoisomerase IV subunit A [Polaribacter irgensii 23-P]
          Length = 917

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 132/601 (21%), Positives = 251/601 (41%), Gaps = 41/601 (6%)

Query: 4   DNISNSNTLVEENVKAVS-LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +  S++     E V+ ++ +    +E +L YA   I ERA+P L DG KPV RRI+H+M 
Sbjct: 18  EEQSDTENDQTETVETITKITGMYKEWFLDYASYVILERAVPSLEDGLKPVQRRIMHSMK 77

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI- 121
           ++       + K A IVG  + + HPHGD S+ D++V++ Q    +  LI  QGN+GNI 
Sbjct: 78  DL---DDGRYNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KELLIDMQGNWGNIL 129

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            GD AAA RY EAR+++ A  ++   +     ++ +Y+    EP+  P KFP LLA G  
Sbjct: 130 TGDRAAASRYIEARLSKFALDVV--FNSKTTAWKQSYDGRRKEPIDLPVKFPLLLAQGAE 187

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG++T +  HN  E+ +A++  +      I         PDF TGGI   +      
Sbjct: 188 GIAVGLSTKVLPHNFIELIDASMKYLKGRSFKIL--------PDFITGGIADFT------ 233

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  G  G +VR R  + ++ +    +V+ EIP+    + LI+ I +    K    ++ I
Sbjct: 234 NYNDGVRGGKVRVRARIAQLDK--KTLVINEIPFGTTTTTLIDSIIKA-NEKGKIKIKKI 290

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            D +A +V I+      ++ PD  +++++  +  E         +   + P  + +  +L
Sbjct: 291 EDNTAAEVEIL-VHLPPNVSPDKTIDALYAFTSCENSISPLSCTIEDNK-PVFVGVSEML 348

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIR--------NED 411
           K       ++L +    ++  ++ +      + + I      +I             N  
Sbjct: 349 KHSTDLTVDLLKKELEIQLNELEEQWHFSSLERIFIENRIYRDIEEEETWEGVLNAINLG 408

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
               +   + ++ E  +  +  +R++ + K +  + K  ++ L A+   + + L +  + 
Sbjct: 409 LQPHIKHLKRAIVEEDIARLTEIRIKKISKFDIDKAKQFIEGLEAKIAIVTAHLANLIEF 468

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
                  +++      +     R          A          E+  I   +    ++ 
Sbjct: 469 AIAYFKRLKDTYGAGKERKTEVRTFDDIIASKVAMNNVKLYVNREEGFIGTTLKKDEFVT 528

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   +      +    K A        I+ ++   K       N +   G   A  
Sbjct: 529 DCSDIDDIIIFRKDGKMMVTKAAGKTFVGKDIIYVAVFKKQDKRTVYNFMYRDGAKGASY 588

Query: 592 L 592
           +
Sbjct: 589 M 589


>gi|288930007|ref|ZP_06423848.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328666|gb|EFC67256.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 896

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 139/597 (23%), Positives = 244/597 (40%), Gaps = 45/597 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P++ DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 35  LSGMYQNWFLDYASYVILERAVPNIADGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 91

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV++ Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 92  TM-QFHPHGDASIGDALVQMGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 146

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +     ++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN++E+C
Sbjct: 147 LDTV--FNPKTTQWQASYDGRNKEPIALPVKFPLLLAQGAEGIAVGLSSKILPHNMRELC 204

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +      +         PDFPTGG I  SR      Y  G+ G  ++ R  +  
Sbjct: 205 QAAIHYLKGEPFRLF--------PDFPTGGSIDASR------YNDGQRGGSIKVRAKI-- 248

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  +V+ EIP+    + LIE I + +   +I   + + D +A +V I        +
Sbjct: 249 EKLDNKTLVIREIPFSKNTTTLIESILKAVDKGKIK-AKRVDDNTAAEVEIQ-VHLAPGI 306

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  SD E     N  V+   + P+ + +  +L+  +     +L      R 
Sbjct: 307 SSDKTIDALYAFSDCEINISPNCCVIEDNK-PRFLTVSEVLRHNVDSTMGLLRMELQIRK 365

Query: 381 QAIDRRVEILKGLLIAY-LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
             +  ++       I     I +       E+    V      LT  + + I  LR   +
Sbjct: 366 DELLEQLFFSSLEKIFIEERIYKDKKFENAENMDVAVEHIDNRLTPFKPNFIRELRREDI 425

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            +L E +++               L  S  +    +A    E+  I      +      +
Sbjct: 426 MRLMEIKMQ-------------RILKFSKDKADELLARIKEEIAGIDHDLAHMTDVTIKW 472

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +            + E +    + + +    + K +               +   +   
Sbjct: 473 FKFLIDKYGKDHPRLTEIKSFETIEATKVVEANEKLYINRREGFIGTGLKKDEFVCNCSD 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLL 615
            D IL+   DGK   +   + +    +   +Q+    +        +         +
Sbjct: 533 IDDILVFHRDGKYKIMRVADKIFVGKNVLHVQVHKRNDRRTTYNIVYRDGKEGHYFI 589


>gi|117654239|gb|ABK55550.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654241|gb|ABK55551.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654243|gb|ABK55552.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654245|gb|ABK55553.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654247|gb|ABK55554.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654249|gb|ABK55555.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654251|gb|ABK55556.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654253|gb|ABK55557.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654293|gb|ABK55577.1| DNA gyrase subunit A [Bacillus sp. 3EC1b2]
          Length = 223

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 163/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETPSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|320540698|ref|ZP_08040319.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
 gi|320029239|gb|EFW11297.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
          Length = 131

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 73/125 (58%), Positives = 99/125 (79%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKS
Sbjct: 7   EITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 136 MTQVA 140
           M+++A
Sbjct: 127 MSKIA 131


>gi|260172283|ref|ZP_05758695.1| DNA topoisomerase IV subunit A [Bacteroides sp. D2]
 gi|315920589|ref|ZP_07916829.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694464|gb|EFS31299.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 881

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 151/696 (21%), Positives = 265/696 (38%), Gaps = 73/696 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DENVKHQ-LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRL---DDGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +   E  +         PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGEEFQLY--------PDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++   +  I  TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKINKIDNKTLAI--TEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                     D  +++++  +D E     N  ++   + P  + +  +LK+   +  ++L
Sbjct: 294 -VHLAPGTSSDKTIDALYAFTDCEVSISPNCCIIDDSK-PHFLTVSKVLKKSADNTMDLL 351

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVDAI 431
            +    +   I   +       I                            LT      I
Sbjct: 352 KQELEIKKGEILESLHFSSLEKIFIEERIYKDKEFEQSKDMDAACAHIDERLTPYYPTFI 411

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
             +    + KL E ++                L  +  +    IA    E+ EI +    
Sbjct: 412 REVTKEDILKLMEIKMG-------------RILKFNSDKADELIAKMKEEIAEIDNHLAH 458

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +      + ++ +           E      + + +    + K +               
Sbjct: 459 IVDYTVNWYQMLKNKYGKNFPRHTELRNFDTIEAAKVVEANEKLYINREEGFIGTTLKKD 518

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           +        D +++   DGK    P  +     G       +   N  + I      D  
Sbjct: 519 EFVACCSDIDDVIIFFRDGKYIVTPVAD-KKFVGKNVLYVNVFKKNDKRTIYNVAYRDGK 577

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF-----------LKVSSEEKMKLVVKVTGDH 660
                 ++         + ++ +     T               + E ++  V       
Sbjct: 578 E----GTT--YVKRFAVTSVVRDREYDVTLGTPDSRITYFSANPNGEAEIIKVTLKPNPR 631

Query: 661 VAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYK 693
           V       + +IF  D  ++    R  +G+ L    
Sbjct: 632 V-------RRIIFEHDFSEVSIKGRQARGIILTRLP 660


>gi|294672800|ref|YP_003573416.1| topoisomerase gyrA/parC subunit family protein [Prevotella
           ruminicola 23]
 gi|294473600|gb|ADE82989.1| topoisomerase gyrA/parC subunit family protein [Prevotella
           ruminicola 23]
          Length = 890

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 149/682 (21%), Positives = 262/682 (38%), Gaps = 72/682 (10%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P L DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 31  LSGMYQNWFLDYASYVILERAVPHLGDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 87

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  G SAAA RY EAR+++ A
Sbjct: 88  TM-QFHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGSSAAAPRYIEARLSKFA 142

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  EIC
Sbjct: 143 LDTV--FNPKTTEWKMSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNFCEIC 200

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +            + + PDFPT G I  S+      Y  G+ G  ++ R  +E 
Sbjct: 201 DAAISYLH--------QQPFALYPDFPTSGSIDVSK------YNDGQRGGVIKVRAKIE- 245

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  +V+ EIP+      L + I + I   +I     + D +A +V I        +
Sbjct: 246 -KIDQKTLVIREIPFSKTSETLQDSIVKAIEKGKIK-ARKVEDLTAAEVEIQ-VHLAPGV 302

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + PQ + +  +L+  +   ++++ +    R 
Sbjct: 303 SSDKTIDALYAFTDCEVSISPNCCVIEDNK-PQFLTVSDVLRHSVERTKDLIRQELEIRK 361

Query: 381 QAIDRRVEILKGLLIAY-LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
             +  ++       I     I +     +  +           LT      I  +    +
Sbjct: 362 GELLEQLHFQSLERIFIEERIYKDKKFEQAPNVDAVCEHIDERLTPYYPQFIREVTKDDI 421

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            KL E +++            +    +   +   ++  EI E+        +L      +
Sbjct: 422 LKLLEIKMQ----------RILKFNKDKADELMARLKAEIEEIDR---DLANLVEVTANW 468

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +  +         + E      + S +    + K +               +   +   
Sbjct: 469 FQFLKDKYGKDHPRLTEIRNFDTIDSAKVAEANQKLYINRSDGFIGTGLKKDEFVCNCSD 528

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
            D +++   DGK   +         G       +   N ++ I  A   D          
Sbjct: 529 LDDVIIFYKDGKYKIVRVAE-KLFVGKNILYVNVFKKNDSRTIYNAVYRDG--------K 579

Query: 620 KG--NAFIVEESEIIANT-------RKGKTFL----KVSSEEKMKLVVKVTGDHVAVVGE 666
           KG         + +  +          G   +      + E ++  V      ++     
Sbjct: 580 KGACYIKRFNVTSMTRDKEYDLTQGTDGSRVMYFTANPNGEAEVIKVTLDPSQNI----- 634

Query: 667 NRKLLIFSIDQIPEMSRG-KGV 687
            R  L+    +I    R  KG 
Sbjct: 635 KRVFLVKDFSEIMIKGRASKGN 656


>gi|193735138|gb|ACF20078.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 109/141 (77%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD  VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDCPVYYTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|117654301|gb|ABK55581.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K+RLIEKIA+L+  K+I    D+RDES  +   ++ 
Sbjct: 180 TELPYQVNKARLIEKIADLVRDKKIEGXTDLRDESDRNGMRIVI 223


>gi|117654167|gb|ABK55514.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654169|gb|ABK55515.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654171|gb|ABK55516.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654173|gb|ABK55517.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654175|gb|ABK55518.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654177|gb|ABK55519.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654179|gb|ABK55520.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654181|gb|ABK55521.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654185|gb|ABK55523.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654187|gb|ABK55524.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H + EI +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           E+++ +L+E I GPDFPT G+I   R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMI-MGRSGIRKAYETGRGSITIRAKAQIEETSSGKQVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K++LIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|160885388|ref|ZP_02066391.1| hypothetical protein BACOVA_03388 [Bacteroides ovatus ATCC 8483]
 gi|156109010|gb|EDO10755.1| hypothetical protein BACOVA_03388 [Bacteroides ovatus ATCC 8483]
          Length = 881

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 152/711 (21%), Positives = 265/711 (37%), Gaps = 81/711 (11%)

Query: 8   NSNTLVEENVKAVSLRFA---------LEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           N  T    + K    R            +  +L YA   I ERA+P + DG KPV RRI+
Sbjct: 6   NEITEEHSDYKPADARDESVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRIL 65

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           H+M  +       + K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+
Sbjct: 66  HSMKRL---DDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNW 117

Query: 119 GNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           GNI  GD AAA RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA
Sbjct: 118 GNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLA 175

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            G  GIAVG+++ I  HN  E+C+A+++ +   E  +         PDF TGG I  ++ 
Sbjct: 176 QGVEGIAVGLSSKILPHNFNELCDASISYLRGEEFQLY--------PDFQTGGSIDVAK- 226

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
                Y  G  G  V+ R  + ++   +  I  TEIPY    S +I+ I + +   +I  
Sbjct: 227 -----YNDGERGGAVKVRAKINKIDNKTLAI--TEIPYGKTTSTVIDSILKAVDKGKIK- 278

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           +  + D +A +V I+          D  +++++  +D E     N  V+   + P  + +
Sbjct: 279 IRKVDDNTAANVEIL-VHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSK-PHFLTV 336

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PV 416
             +L++   +  ++L +    +   I   +       I                      
Sbjct: 337 SKVLRKSADNTLDLLKQELEIKKNEILEALHFASLEKIFIEERIYKDKEFEQSKDMDAAC 396

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 LT      I  +    + KL E ++                L  +  +    IA
Sbjct: 397 AHIDERLTPYYPKFIREVTKEDILKLMEIKMG-------------RILKFNSDKADELIA 443

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
               EV EI +    +      + ++ +           E      + + +    + K +
Sbjct: 444 KMKEEVAEIDNHLAHIVDYTVNWYQMLKNKYGKNFPRRTELRNFDTIEAAKVVEANEKLY 503

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
                          +        D +++   DGK    P  +     G       +   
Sbjct: 504 INREEGFIGTALKKDEFVACCSDIDDVIIFFRDGKYIVTPVAD-KKFVGKNVLYVNVFKK 562

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT---------RKGKTFL--KVS 645
           N  + I      D        ++         + ++ +              T+     +
Sbjct: 563 NDKRTIYNVAYRDGKE----GTT--YVKRFAVTSVVRDREYDVTQGTPESRITYFSANPN 616

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYK 693
            E ++  V       V       + +IF  D  ++    R  +GV L    
Sbjct: 617 GEAEIIKVTLKPNPRV-------RRIIFEHDFSEVSIKGRQARGVILTRLP 660


>gi|167764214|ref|ZP_02436341.1| hypothetical protein BACSTE_02599 [Bacteroides stercoris ATCC
           43183]
 gi|167698330|gb|EDS14909.1| hypothetical protein BACSTE_02599 [Bacteroides stercoris ATCC
           43183]
          Length = 904

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 136/656 (20%), Positives = 250/656 (38%), Gaps = 67/656 (10%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRM---EDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GDSAAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDSAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++  +   E  +         PDF TGG I  S+      Y  G  G  VR R  +  
Sbjct: 210 DASVKYLHKEEFKLY--------PDFQTGGNIDVSK------YNDGERGGAVRVRAKI-- 253

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  +V+ EIPY    + + + I +     +I  ++ + D ++  V I+       +
Sbjct: 254 EKVDNKTLVIREIPYGKTVASVCDSIVKASEKGKIK-IKKVEDLTSGSVEIL-VHLAPGV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P  + +  +LK+ + +   +L R    R 
Sbjct: 312 SSDKTIDALYAFTDCEVSISPNCCVIDEQK-PHFLTVSDVLKKSVDNTLALLRRELEIRR 370

Query: 381 QAIDRRVEILKG------LLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------LTENQV 428
             I   +             I      E    +    +     ++ +       +++  +
Sbjct: 371 NEILESLHFSSLEKIFIEERIYKDKEFEQAKNMDAACEHIDERLTPYYPTFIREVSKEDI 430

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             ++ +++  + K    + +  +  + A+ E+ID  L +            R +KE + K
Sbjct: 431 LKLMEIKMARILKFNSDKAEELIARMKADIEEIDRHLAN---IVEYTVDWFRMLKEKYGK 487

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS--NRGWIRSLKSHSVDLSAL--- 543
           +         F  +         + +        + +   +    +  S   D+      
Sbjct: 488 AFPRRTELRNFDTIDSTKVVEANEKLYINREEGFIGTGLKKDEFIANCSDLDDVIIFFRD 547

Query: 544 -HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             +                   +   + K             G     +  +        
Sbjct: 548 GRYIITPVADKKFVGKNILYANVFKKNDKRTIYNVVYRDGKEGTHYIKRFAVTSVVRDRE 607

Query: 603 VTAFVYDSTCKLLVVSSK----GNAFIVEE------------SEIIANTRKGKTFL 642
                     +++  ++          V               +      KG+  +
Sbjct: 608 YDVTQGTPDSRIVYFTANPNGEAEIIKVTLKPNPRIRRIIFEEDFSQINIKGRQAM 663


>gi|288803215|ref|ZP_06408649.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           D18]
 gi|288334256|gb|EFC72697.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           D18]
          Length = 908

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 134/571 (23%), Positives = 240/571 (42%), Gaps = 42/571 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQLGQ----KDLLIDMQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC
Sbjct: 152 LETV--FNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +   E ++         PDFPTGG I  S+      Y  G+ G  ++ R  V  
Sbjct: 210 DAAISYLRGEEFNLY--------PDFPTGGSIDVSK------YNDGQRGGVLKVRAKV-- 253

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  +V+ E+P+    + L E I + +   ++  +  + D +A +V I L       
Sbjct: 254 EKLDNKTLVIREVPFTKTANTLQESITKAVEKGKLK-IRRVEDMTASEVEIQL-HLTPGT 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P+ + +  +L+    H + +L      R 
Sbjct: 312 SSDKTIDALYAFTDCEINISPNCCVIRDNK-PEFLTISDVLRNSAEHTKALLKLELEIRK 370

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             ++ ++       I   +                            V A ++ +L   +
Sbjct: 371 HELEEQLFYNSLERIFIEDRIYKERKFETAKDIDE------------VVAFVDSKLEPYK 418

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           K    ++  +    L E +    L  +  +    I     E+ EI     ++ R    + 
Sbjct: 419 KTFIREVTRDDIIRLLEIKMQRILKFNKDKADELIQKIKAEIAEIDKDLNEMVRVTIEWF 478

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              +           E +    +++ +    + K +               +   +    
Sbjct: 479 THLKEKYGGDHPRRTEIKSFDTIVAAKVVDANEKLYIDRQEGFIGTGLKKAEFVQNCSDL 538

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           D +++   DGK   +   + +        +Q
Sbjct: 539 DDVIIFYRDGKYKVIRIADKVFVGKGVLHVQ 569


>gi|148985115|ref|ZP_01818354.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|147922560|gb|EDK73678.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
          Length = 141

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 69/139 (49%), Positives = 105/139 (75%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDED 150
           TEARM+++A  +L+ +++ 
Sbjct: 121 TEARMSKIALEMLRDINKK 139


>gi|167861162|gb|ACA05284.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 113/148 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G+SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 GSSGIAVGMATNIPPHNITEVINGCLAY 148


>gi|237715450|ref|ZP_04545931.1| topoisomerase IV subunit A [Bacteroides sp. D1]
 gi|262405292|ref|ZP_06081842.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643163|ref|ZP_06720993.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CC
           2a]
 gi|294810552|ref|ZP_06769204.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229444759|gb|EEO50550.1| topoisomerase IV subunit A [Bacteroides sp. D1]
 gi|262356167|gb|EEZ05257.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641508|gb|EFF59696.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CC
           2a]
 gi|294442213|gb|EFG11028.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 881

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 152/711 (21%), Positives = 265/711 (37%), Gaps = 81/711 (11%)

Query: 8   NSNTLVEENVKAVSLRFA---------LEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           N  T    + K    R            +  +L YA   I ERA+P + DG KPV RRI+
Sbjct: 6   NEITEEHSDYKPADARDESVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRIL 65

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           H+M  +       + K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+
Sbjct: 66  HSMKRL---DDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNW 117

Query: 119 GNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           GNI  GD AAA RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA
Sbjct: 118 GNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLA 175

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            G  GIAVG+++ I  HN  E+C+A+++ +   E  +         PDF TGG I  ++ 
Sbjct: 176 QGVEGIAVGLSSKILPHNFNELCDASISYLHGEEFQLY--------PDFQTGGSIDVAK- 226

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
                Y  G  G  V+ R  + ++   +  I  TEIPY    S +I+ I + +   +I  
Sbjct: 227 -----YNDGERGGAVKVRAKINKIDNKTLAI--TEIPYGKTTSTVIDSILKAVDKGKIK- 278

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           +  + D +A +V I+          D  +++++  +D E     N  V+   + P  + +
Sbjct: 279 IRKVDDNTAANVEIL-VHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSK-PHFLTV 336

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PV 416
             +L++   +  ++L +    +   I   +       I                      
Sbjct: 337 SKVLRKSADNTLDLLKQELEIKKNEILEALHFASLEKIFIEERIYKDKEFEQSKDMDAAC 396

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 LT      I  +    + KL E ++                L  +  +    IA
Sbjct: 397 AHIDERLTPYYPKFIREVTKEDILKLMEIKMG-------------RILKFNSDKADELIA 443

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
               EV EI +    +      + ++ +           E      + + +    + K +
Sbjct: 444 RMKEEVAEIDNHLAHIVDYTVNWYQMLKNKYGKNFPRRTELRNFDTIEAAKVVEANEKLY 503

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
                          +        D +++   DGK    P  +     G       +   
Sbjct: 504 INREEGFIGTALKKDEFVACCSDIDDVIIFFRDGKYIVTPVAD-KKFVGKNVLYVNVFKK 562

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT---------RKGKTFL--KVS 645
           N  + I      D        ++         + ++ +              T+     +
Sbjct: 563 NDKRTIYNVAYRDGKE----GTT--YVKRFAVTSVVRDREYDVTQGTPESRITYFSANPN 616

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYK 693
            E ++  V       V       + +IF  D  ++    R  +GV L    
Sbjct: 617 GEAEIIKVTLKPNPRV-------RRIIFEHDFSEVSIKGRQARGVILTRLP 660


>gi|293370569|ref|ZP_06617121.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CMC
           3f]
 gi|298481614|ref|ZP_06999805.1| DNA topoisomerase 4 subunit A [Bacteroides sp. D22]
 gi|299147250|ref|ZP_07040315.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_23]
 gi|292634303|gb|EFF52840.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CMC
           3f]
 gi|298272155|gb|EFI13725.1| DNA topoisomerase 4 subunit A [Bacteroides sp. D22]
 gi|298514528|gb|EFI38412.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_23]
          Length = 881

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 151/696 (21%), Positives = 265/696 (38%), Gaps = 73/696 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DENVKHQ-LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRL---DDGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +   E  +         PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGEEFQLY--------PDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++   +  I  TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKINKIDNKTLAI--TEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                     D  +++++  +D E     N  ++   + P  + +  +LK+   +  ++L
Sbjct: 294 -VHLAPGTSSDKTIDALYAFTDCEVSISPNCCIIDDSK-PHFLTVSKVLKKSADNTMDLL 351

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVDAI 431
            +    +   I   +       I                            LT      I
Sbjct: 352 KQELEIKKGEILESLHFSSLEKIFIEERIYKDKEFEQSKDMDAACAHIDERLTPYYPTFI 411

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
             +    + KL E ++                L  +  +    IA    E+ EI +    
Sbjct: 412 REVTKEDILKLMEIKMG-------------RILKFNSDKADELIAKMKEEIAEIDNHLAH 458

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +      + ++ +           E      + + +    + K +               
Sbjct: 459 IVDYTVNWYQMLKNKYGKNFPRHTELRNFDTIEAAKVVEANEKLYINREEGFIGTTLKKD 518

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           +        D +++   DGK    P  +     G       +   N  + I      D  
Sbjct: 519 EFVACCSDIDDVIIFFRDGKYIVTPVAD-KKFVGKNVLYVNVFKKNDKRTIYNVAYRDGK 577

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF-----------LKVSSEEKMKLVVKVTGDH 660
                 ++         + ++ +     T               + E ++  V       
Sbjct: 578 E----GTT--YVKRFAVTSVVRDREYDVTLGTPDSRITYFSANPNGEAEIIKVTLKPNPR 631

Query: 661 VAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYK 693
           V       + +IF  D  ++    R  +G+ L    
Sbjct: 632 V-------RRIIFEHDFSEVSIKGRQARGIILTRLP 660


>gi|117654267|gb|ABK55564.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D+ D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYXDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTXSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++ 
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|312130258|ref|YP_003997598.1| DNA topoisomerase (ATP-hydrolyzing) [Leadbetterella byssophila DSM
           17132]
 gi|311906804|gb|ADQ17245.1| DNA topoisomerase (ATP-hydrolyzing) [Leadbetterella byssophila DSM
           17132]
          Length = 868

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 155/721 (21%), Positives = 278/721 (38%), Gaps = 85/721 (11%)

Query: 12  LVEENVKAVS----LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + EEN         L    E+ +L YA   I ERA+P + DG KPV RR +HA+ EM   
Sbjct: 1   MSEENYDPAPQKELLDDMFEKYFLEYASYVILERAVPAIEDGLKPVQRRFLHALKEM--- 57

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSA 126
               F K A ++G  + + HPHGD S+ D++V + Q    +  L+  QGN+G+   GDSA
Sbjct: 58  DDGRFNKVANVIGSTM-QYHPHGDASIGDAIVNIGQ----KELLLDIQGNWGDVRTGDSA 112

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY E R+++    +L   +ED  +++ +Y+    EPV  P+KFP +L  G  GIAVG
Sbjct: 113 AAPRYIEVRLSKFGHEVL--FNEDTTEWQMSYDGRKREPVTLPAKFPLVLEMGAEGIAVG 170

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           ++T I  HN  E+CEA++  +        K   +++ PDF TGG+I  S      +Y  G
Sbjct: 171 LSTKILPHNFIELCEASIKYL--------KNEPFVLYPDFLTGGLIDVS------NYNDG 216

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G +V+ R  + EV + +  I  TEIP+      LIE I +         ++ + D +A
Sbjct: 217 ARGGKVKMRAKISEVDKKTLKI--TEIPFSTTTGSLIESIIKA-NDSGKIKIKKVEDNTA 273

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++V I+      +   D+ +++++  ++ E     N  V+   + P  + +  ILK    
Sbjct: 274 KNVEII-IHLAPNTSTDITIDALYAFTNCEVSVSPNAVVIVDQK-PHFLGVSDILKNSTD 331

Query: 367 HRREVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
               +L R    R   +  ++     + + I      +I      E   + +        
Sbjct: 332 QTLHLLRRELEIRKGELLEKILYSSLEKIFIENRIYRDIEECETFESVIETIDKGLEPYK 391

Query: 425 ENQVDAILNLRLRSLRKLE-----EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++    I    +  L ++      +Y      + +  ++E++  + +             
Sbjct: 392 KDFYREIGREDIIRLTEIRIKRISKYDSFKADELMRKQQEELVEVNDHLNNMVRYTINFF 451

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +E+   + K      RRT   +      A +                     + K +   
Sbjct: 452 KELIRKYGK---GRERRTEIVQFGEVQAAVV------------------AANNQKLYVDK 490

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +          +  +     D I++   DGK   +   + +    +     +    N  
Sbjct: 491 ENGFIGYGLKKDEYVMDCSDIDDIIVFRADGKFSVVKIQDKVFVGKNIIYCAVFRK-NDE 549

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII----ANTRKGKTFLKVSSEE-KMKLVV 654
           + I      D               +  + E      +   K   F    + E ++  V 
Sbjct: 550 RKIYNVIYLDGKSGRTFAKRFAVTGVTRDKEYDVTKGSPRSKVLYFSANENGEAEVVTVN 609

Query: 655 KVTGDHVAVVGENRKLLIFSID--QIPEMSRGK--------GVRLQSYKDGGISDVICFK 704
                       N K  +F  +   +   +R           VR  ++K  G S +    
Sbjct: 610 LT-------ASSNAKKKVFDFNFADLLIKNRSALGNLVSKYAVRKINFKTAGKSTLGGVD 662

Query: 705 I 705
           I
Sbjct: 663 I 663


>gi|270295502|ref|ZP_06201703.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274749|gb|EFA20610.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 893

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 131/656 (19%), Positives = 247/656 (37%), Gaps = 67/656 (10%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRM---EDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  L+  QGN+GNI  GDSAAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDSAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A+++ + N E  +         PDF TGG I  S+      Y  G  G  +R R  +E+
Sbjct: 210 DASISYLHNEEFKLY--------PDFQTGGSIDVSK------YNDGERGGAIRVRSKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +   +  I   EIPY    + + + I +     +I  +  + D ++  V I+       +
Sbjct: 256 IDNKTLAI--KEIPYGKTVASVCDSIVKASEKGKIK-IRKVEDLTSGSVEIL-VHLAPGV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P  + +  +L++ + +   +L +    R 
Sbjct: 312 SSDKTIDALYAFTDCEVSISPNCCVIDDQK-PHFLTVSDVLRKSVDNTLALLRQELEIRK 370

Query: 381 QAIDRRVEILKG------LLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------LTENQV 428
             I   +             I      E    +    +     ++ +       +T+  +
Sbjct: 371 GEILESLHFASLEKIFIEERIYKDKEFEQAKNMDAACEHIDERLTPYYPTFIREVTKEDI 430

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             ++ +++  + K    + +  +  +  + E+ID  L +            R +K+ + K
Sbjct: 431 LRLMEIKMARILKFNSDKAEELIARMRKDIEEIDCHLAN---IVEYTVDWFRMLKDKYGK 487

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG------WIRSLKSHSVDLSA 542
           +         F  +         + +        + +             +    +    
Sbjct: 488 AFPRRTELRNFDTIEATKVIEANEKLYINREEGFIGTGLKKDEFIGNCSPIDDVIIFFRD 547

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             +                   +   + K             G     +  +        
Sbjct: 548 GKYIITPVADKKFVGKNILYANIFKKNDKRTIYNVCYRDGKEGTSYIKRFAVTSVVRDRE 607

Query: 603 VTAFVYDSTCKLLVVSSK----GNAFIVEE------------SEIIANTRKGKTFL 642
                     ++   ++          V               +      KG+  +
Sbjct: 608 YDVTQGTPDSRITYFTANPNGEAEIIKVTLKPNPRVRRIIFEEDFSNINIKGRQAM 663


>gi|261599203|gb|ACX85664.1| ParC [Streptococcus mitis]
          Length = 160

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/154 (46%), Positives = 111/154 (72%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           +RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++V
Sbjct: 7   DRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMV 66

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   ++
Sbjct: 67  RMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 126

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           + + EP V P+ F NLL NG++GI+ G AT IPS
Sbjct: 127 DTEKEPTVLPAAFSNLLVNGSTGISAGYATDIPS 160


>gi|260591221|ref|ZP_05856679.1| DNA topoisomerase 4 subunit A [Prevotella veroralis F0319]
 gi|260537086|gb|EEX19703.1| DNA topoisomerase 4 subunit A [Prevotella veroralis F0319]
          Length = 910

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 134/559 (23%), Positives = 237/559 (42%), Gaps = 42/559 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC
Sbjct: 152 LETV--FNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EAA+  + N +  +         PDFPTGG I  ++      Y  G+ G  ++ R  +  
Sbjct: 210 EAAVQYLRNEDFHLY--------PDFPTGGSIDAAK------YNDGQRGGVLKVRAKI-- 253

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  +V+ E+P+    + L E I + +   +I  +  + D +A +V I L       
Sbjct: 254 EKLDNKTLVIREVPFTKTANSLQESITKAVEKGKIK-VRKVEDMTASEVEIQL-HLTPGT 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P+ + +  +L+  + H + +L      R 
Sbjct: 312 SSDKTIDALYAFTDCEINISPNCCVIEDNK-PKFLTISDVLRNSVEHTKALLKMELEIRK 370

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             ++ ++       I                                V A ++ +L   +
Sbjct: 371 HELEEQLFYNSLERIFIEERIYKERKFETARNLDE------------VVAFVDAKLDPYK 418

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           K    ++  E    L E +    L  +  +    I     E+ EI    +++ R    + 
Sbjct: 419 KTFIREVTREDILRLLEIKMQRILKFNKDKADELIQKIKAEIAEIDKDLSEMVRVTIEWF 478

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              +           E +    +++ +    + K +    +          +   +    
Sbjct: 479 THLKEKYGKDHPRHTEIKSFDTIVAAKVVDANEKLYIDSKAGFIGTGLKKAEFVQNCSDL 538

Query: 561 DRILLLSTDGKAYTLPAGN 579
           D +++   DGK   +    
Sbjct: 539 DDVIIFYRDGKYKVIRIAE 557


>gi|295394234|gb|ADG03728.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 151

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/151 (45%), Positives = 109/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   
Sbjct: 61  MVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|160891364|ref|ZP_02072367.1| hypothetical protein BACUNI_03813 [Bacteroides uniformis ATCC 8492]
 gi|156858771|gb|EDO52202.1| hypothetical protein BACUNI_03813 [Bacteroides uniformis ATCC 8492]
          Length = 893

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 131/656 (19%), Positives = 247/656 (37%), Gaps = 67/656 (10%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRM---EDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  L+  QGN+GNI  GDSAAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDSAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A+++ + N E  +         PDF TGG I  S+      Y  G  G  +R R  +E+
Sbjct: 210 DASISYLHNEEFKLY--------PDFQTGGSIDVSK------YNDGERGGAIRVRSKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +   +  I   EIPY    + + + I +     +I  +  + D ++  V I+       +
Sbjct: 256 IDNKTLAI--KEIPYGKTVASVCDSIVKASEKGKIK-IRKVEDLTSGSVEIL-VHLAPGV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P  + +  +L++ + +   +L +    R 
Sbjct: 312 SSDKTIDALYAFTDCEVSISPNCCVIDDQK-PHFLTVSDVLRKSVDNTLALLRQELEIRK 370

Query: 381 QAIDRRVEILKG------LLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------LTENQV 428
             I   +             I      E    +    +     ++ +       +T+  +
Sbjct: 371 GEILESLHFASLEKIFIEERIYKDKEFEQAKNMDAACEHIDERLTPYYPTFIREVTKEDI 430

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             ++ +++  + K    + +  +  +  + E+ID  L +            R +K+ + K
Sbjct: 431 LRLMEIKMARILKFNSDKAEELIARMRKDIEEIDCHLAN---IVEYTVDWFRMLKDKYGK 487

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG------WIRSLKSHSVDLSA 542
           +         F  +         + +        + +             +    +    
Sbjct: 488 AFPRRTELRNFDTIEATKVIEANEKLYINREEGFIGTGLKKDEFIGNCSPIDDVIIFFRD 547

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             +                   +   + K             G     +  +        
Sbjct: 548 GKYIITPVADKKFVGKNILYANIFKKNDKRTIYNVCYRDGKEGTSYIKRFAVTSVVRDRE 607

Query: 603 VTAFVYDSTCKLLVVSSK----GNAFIVEE------------SEIIANTRKGKTFL 642
                     ++   ++          V               +      KG+  +
Sbjct: 608 YDVTQGTPDSRITYFTANPNGEAEIIKVTLKPNPRVRRIIFEEDFSNINIKGRQAM 663


>gi|320537065|ref|ZP_08037044.1| DNA gyrase/topoisomerase IV, A subunit [Treponema phagedenis F0421]
 gi|320146140|gb|EFW37777.1| DNA gyrase/topoisomerase IV, A subunit [Treponema phagedenis F0421]
          Length = 646

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 144/610 (23%), Positives = 247/610 (40%), Gaps = 45/610 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +     + +L YA   I++RAIPDL DG KPV RRI+H++ EM       F K A +VG 
Sbjct: 4   IESLFNKNFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEM---DDGKFHKVANVVGH 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + K HPHGD S+ ++LV LA     +   IS QGNFGNI  GD A+A RY E R+T+  
Sbjct: 61  CM-KYHPHGDASIGNALVVLA----NKELFISKQGNFGNIYTGDEASAARYIECRITEFG 115

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + +L   + +   +  +Y+  + EP+VF +K P +L  G  GIAVGM+T I  HN++EI 
Sbjct: 116 KSLLY--NPNITQYVPSYDGRNKEPLVFRAKIPVVLVIGAEGIAVGMSTKILPHNIKEIL 173

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA        EI   +   + + PDFPTGG+I  S          G G   VRA+    +
Sbjct: 174 EA--------EIQCIEGKPFALYPDFPTGGLIDVSEYG------DGLGKVLVRAKLDTSD 219

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  I++ E+P+      +I  I     + ++  + +I D +AE V I L       
Sbjct: 220 EK----RILIKELPFGSTTESMITSIENASKSGKVK-VSEINDYTAETVEIELKLPRGVY 274

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D++ +S++  ++ E     N+ ++    +PQ M +  ++K  +    ++L     +  
Sbjct: 275 SQDVV-DSLYAFTECEQSISCNL-LVIKNNLPQQMTVTDVIKNHVKQLLQILKDELEYER 332

Query: 381 QAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------FSLTENQVDA 430
             +  R+ +   + + I      +I  +         V+             +TE+ VD 
Sbjct: 333 AMLQERLHMRTLERIFIEERIYKKIETMKTASGVITAVLKGFEPFRAELIRDITEDDVDK 392

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L + +R +   +  + + E + +    ++I  LL + K     +   I    +  +   
Sbjct: 393 LLKIPIRRISLYDINKNRQETEEIQKRLKEIAKLLKNLKGYARSVLEGILAKLDSETVKR 452

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPI---TVVISNRGWIRSLKSHSVDLSALHFKE 547
                  T  +V  A    +     E+      +V         +       L       
Sbjct: 453 KTEITGFTKIDVKEAVSRDISLRYDEETGYLGTSVTTGKEILKVTPYDRIFILRKSGVYT 512

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
              +   L   T       +   +   +    +      G        +          +
Sbjct: 513 VTDVPDRLFVDTGMWYCGFAEKEELSQVLFTLIYKDAKTGCPYIKRCRVEGYILNRDYLI 572

Query: 608 YDSTCKLLVV 617
                 LL V
Sbjct: 573 IPDDATLLFV 582


>gi|255036406|ref|YP_003087027.1| DNA topoisomerase IV subunit A [Dyadobacter fermentans DSM 18053]
 gi|254949162|gb|ACT93862.1| DNA topoisomerase (ATP-hydrolyzing) [Dyadobacter fermentans DSM
           18053]
          Length = 914

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 132/572 (23%), Positives = 245/572 (42%), Gaps = 64/572 (11%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            + +    E  +L YA   I ERA+P + DG KPV RRI+HA++EM       F K A +
Sbjct: 18  KLPISGLYENWFLDYASYVILERAVPAIEDGLKPVQRRIMHALNEM---DDGRFNKVANV 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMT 137
           VG  + + HPHGD S+YD++V + Q    +  L   QGN+G+I  GD AAA RY E R++
Sbjct: 75  VGSSM-QYHPHGDASIYDAIVNIGQ----KELLFDTQGNWGDIRTGDGAAAARYIEVRLS 129

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           +  + ++   ++D  +++ +Y+    EP+  P KFP LL  G  GIAVG++T I  HN  
Sbjct: 130 RFGKDVV--FNDDTTEWQLSYDGRKREPITLPVKFPLLLTLGVEGIAVGLSTKILPHNFC 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ EA++ ++   E++I         PDF TGG++  S      +Y  G  G +VR R  
Sbjct: 188 ELIEASIGILQGKEVTIY--------PDFLTGGLVDVS------NYNDGHRGGKVRVRAK 233

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +EE  +    +V+ +IP+    + LIE I +         ++ + D +A DV I      
Sbjct: 234 IEEEDKKM--LVIRDIPFGTTTTSLIESIIKA-NDAGKIKIKKVVDNTAADVEIQ-VHLA 289

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             + PD+ M++++  ++ E     N  ++   + P  + +  ILK        +L R   
Sbjct: 290 PGVSPDITMDALYAFTECEVSISPNACIIIAEK-PHFVGVTDILKYNTQQTVHLLQRELE 348

Query: 378 FRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------RFSLTENQ 427
            +   +  ++    L+ + I      +I      E   + +              +T++ 
Sbjct: 349 IKRLELLEKILYGSLEKIFIENRIYRDIEECETFEAVIRTIDKGLEPFKPQFYREITDDD 408

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           + A+  +R++ + K + ++    +      +  +    ++            R++ + + 
Sbjct: 409 IVALTEIRIKRISKYDSFKADELMR---KWEADLAETEDNLAHITRFAIEYFRDLLKKYG 465

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K+     RRT     ++     +                     + K +           
Sbjct: 466 KN---RGRRTEIRAFNQIAANIV------------------AANNQKLYVNRAEGFVGYG 504

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
               +  +     D I++   DG+       +
Sbjct: 505 LKKDEYVMDCSDIDDIIVFRGDGRCVVTKVQD 536


>gi|167861164|gb|ACA05285.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 114/148 (77%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGDSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSVDGDSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G+SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|329964604|ref|ZP_08301658.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides fluxus YIT
           12057]
 gi|328525004|gb|EGF52056.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides fluxus YIT
           12057]
          Length = 893

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 134/653 (20%), Positives = 241/653 (36%), Gaps = 61/653 (9%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRM---EDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  L+  QGN+GNI  GDSAAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIADALVQLGQ----KDLLVDCQGNWGNILTGDSAAASRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++  +   +  +         PDF TGG I  S+      Y  G  G  VR R  +E+
Sbjct: 210 DASIKYLHKEDFKLY--------PDFQTGGSIDVSK------YNDGERGGAVRVRSKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +   +  I   EIPY    + + + I +     +I  +  + D ++  V I+       +
Sbjct: 256 IDNKTLAI--KEIPYGKTVASVCDSIVKASEKGKIK-IRKVEDLTSGSVEIL-VHLAPGV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P  + +  +L++ + +  ++L +    R 
Sbjct: 312 SSDKTIDALYAFTDCEVSISPNCCVIDNQK-PHFLTVSDVLRKSVNNTLDLLRQELEIRR 370

Query: 381 QAIDRRVEILKG------LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT---ENQVDAI 431
             I   +             I      E    +    +     ++ +  T   E   D I
Sbjct: 371 NEIRENLHFASLEKIFIEERIYKDKEFEQAKNMDAACEHIDNRLTPYYPTFIREVTKDDI 430

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L    + ++ ++      + +   K  I+ +               R +KE + K   
Sbjct: 431 LRLMEIKMARILKFNSDKAEELIARMKADIEEIDRHLANIVEYTVDWFRMLKEKYGKEFP 490

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG------WIRSLKSHSVDLSALHF 545
                  F  +         + +        + +             +    +      +
Sbjct: 491 RRTELRNFDTIEATKVIEANEKLYINREEGFIGTGLKKDEFIANCSPIDDVIIFFRDGKY 550

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
                              +   + K             G     +  +           
Sbjct: 551 IITPVADKKFVGKNILYANVFKKNDKRTIYNVCYRDGKEGTSYIKRFAVTSVVRDREYDV 610

Query: 606 FVYDSTCKLLVVSSK----GNAFIVEE------------SEIIANTRKGKTFL 642
                  ++   ++          V               +  A   KG+  +
Sbjct: 611 TQGTPDSRITYFTANPNGEAEIIKVTLKPNPRVRRIIFEEDFSAINIKGRQAM 663


>gi|167861160|gb|ACA05283.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 114/148 (77%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +S P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTESIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G+SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|167861154|gb|ACA05280.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 113/148 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G+SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|119952841|ref|YP_945050.1| DNA topoisomerase IV subunit A [Borrelia turicatae 91E135]
 gi|119861612|gb|AAX17380.1| topoisomerase IV subunit A [Borrelia turicatae 91E135]
          Length = 628

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 142/635 (22%), Positives = 257/635 (40%), Gaps = 59/635 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + ++  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIKTLLKDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN + GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNMA----NKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  + EP++FP+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFEVLY--SKEITSYEPSYDGRNDEPLIFPAKIPVILVQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      +         PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILSAVKSELLGESYELY--------PDFPTG--------GIVDVNEYADGNGKVLVRARI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E    +  I++ E+P+      LI  I   I    I  +  I D + E+V I L    R
Sbjct: 215 -EPTDDNKAILIKELPFGETTESLIASIERAIRKNYIK-VSSINDFTTENVEIEL-TLPR 271

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +LS  R P +  +  I+K    H +++L      
Sbjct: 272 GVYASEVIEKLYHYTNCQVSISVNLLLLSD-RYPVIYTVTDIIKFHAEHLQKILKMELEL 330

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
                           I      + +  +  E K   ++ +    ++     +  + L+ 
Sbjct: 331 ERN------------KILEKIFSKTLEQMFIEKKIYKILETISKESDVVNIVLSEI-LKY 377

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
                   I  +    L +       +    +    I    +E+K + S    +      
Sbjct: 378 KDSFLYRDIVLDDIENLLKIPIRKISMFDIDKNNKDIRNLSKELKSVESNIKSIRGFSIN 437

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
           F +      + + +   E   I          +++K +    +          +   +A 
Sbjct: 438 FIDTLLEKYSKVYRRKTEISLIKSKNVKEIATKNMKVYLNLKAGFVGTSLIDGEFIGNAS 497

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKLLV 616
             D+IL+      +Y L      +         L+ D+N+++D V + +Y   +      
Sbjct: 498 YYDKILIFKK--NSYVLKNIEDKTFIDKNNVNVLVYDINNSKDQVFSIIYLNKADNFY-- 553

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
                     +  + I +    K +  ++  ++  
Sbjct: 554 -----YVKRFKIDKFITD----KIYEFLNDGDEFI 579


>gi|218258786|ref|ZP_03475064.1| hypothetical protein PRABACTJOHN_00720 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225218|gb|EEC97868.1| hypothetical protein PRABACTJOHN_00720 [Parabacteroides johnsonii
           DSM 18315]
          Length = 910

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 137/587 (23%), Positives = 230/587 (39%), Gaps = 45/587 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    ++ +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 58  LSGMYQDWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRL---DDGRYNKVANIVGH 114

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 115 TM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA 169

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+ 
Sbjct: 170 LETV--FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELL 227

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++A +   E        + + PDF TGG I  S+      Y  G  G  V+ R  +  
Sbjct: 228 DASVAYLRGEE--------FTLYPDFQTGGYIDVSK------YNDGERGGSVKVRAKIT- 272

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  +V++EIPY    S LIE I +    K    ++ + D +A +V I+       +
Sbjct: 273 -KLDNKTLVISEIPYGKTTSTLIESILKA-NDKGKIKIKKVDDNTARNVEIL-VHLAPGV 329

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P  + +  +LK        +L      + 
Sbjct: 330 SSDKTIDALYAFTDCEISISPNCCVIMDNK-PHFLTVSDVLKHSTDDTLHLLRTELEIQK 388

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-LTENQVDAILNLRLRSL 439
             ++  +       I                     +      L   +   I  +    +
Sbjct: 389 GELEESLFFASLEKIFIEERIYKDKEFEEAKDMDEAIAHIDKRLDPFKPHFIREVTREDI 448

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            KL E ++                L  +  +    IA    E+ +I      +      +
Sbjct: 449 LKLMEIKMG-------------RILKFNTDKCNATIAQYKEEIAKIDDHLAHIVDYTVDW 495

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
             + +         M E      + + +    + K +               +   +   
Sbjct: 496 FMMLKEKYGKNYPRMTEVRNFDTIEATKVVEANEKLYINRAEGFIGTGLKKDEFVCNCSD 555

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            D I+L   +G    +         G       +   N N+ I    
Sbjct: 556 IDDIILFYRNGTYKVVKVSE-KMFVGKDILYLNVFKRNDNRTIYNVI 601


>gi|117654313|gb|ABK55587.1| DNA gyrase subunit A [Bacillus sp. 3EC5B1]
          Length = 223

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+ PNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRXPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++ 
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|237719816|ref|ZP_04550297.1| topoisomerase IV subunit A [Bacteroides sp. 2_2_4]
 gi|229451085|gb|EEO56876.1| topoisomerase IV subunit A [Bacteroides sp. 2_2_4]
          Length = 881

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 151/696 (21%), Positives = 264/696 (37%), Gaps = 73/696 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DENVKHQ-LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRL---DDGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVV--FNPKTTKWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +   E  +         PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGEEFQLY--------PDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++   +  I  TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKINKIDNKTLAI--TEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                     D  +++++  +D E     N  ++   + P  + +  +LK+   +  ++L
Sbjct: 294 -VHLAPGTSSDKTIDALYAFTDCEVSISPNCCIIDDSK-PHFLTVSKVLKKSADNTMDLL 351

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVDAI 431
            +    +   I   +       I                            LT      I
Sbjct: 352 KQELEIKKGEILESLHFSSLEKIFIEERIYKDKEFEQSKDMDAACAHIDERLTPYYPTFI 411

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
             +    + KL E ++                L  +  +    IA    E+ EI +    
Sbjct: 412 REVTKEDILKLMEIKMG-------------RILKFNSDKADELIAKMKEEIAEIDNHLAH 458

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +      + ++ +           E      + + +    + K +               
Sbjct: 459 IVDYTVNWYQMLKNKYGKNFPRHTELRNFDTIEAAKVVEANEKLYINREEGFIGTTLKKD 518

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           +        D +++   DGK    P  +     G       +   N  + I      D  
Sbjct: 519 EFVACCSDIDDVIIFFRDGKYIVTPVAD-KKFVGKNVLYVNVFKKNDKRTIYNVAYRDGK 577

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF-----------LKVSSEEKMKLVVKVTGDH 660
                 ++         + ++ +     T               + E ++  V       
Sbjct: 578 E----GTT--YVKRFAVTSVVRDREYDVTLGTPDSRITYFSANPNGEAEIIKVTLKPNPR 631

Query: 661 VAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYK 693
           V       + +IF  D  ++    R  +G+ L    
Sbjct: 632 V-------RRIIFEHDFSEVSIKGRQARGIILTRLP 660


>gi|117654315|gb|ABK55588.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 108/220 (49%), Positives = 158/220 (71%), Gaps = 1/220 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +E    G   I++
Sbjct: 121 DITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEXTSSGKPVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           TEIPYQV K+ LIEKIA+L+  K+I  + D+RDES  +  
Sbjct: 180 TEIPYQVNKAXLIEKIADLVPDKKIDGITDLRDESNRNGM 219


>gi|333029667|ref|ZP_08457728.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides coprosuis DSM
           18011]
 gi|332740264|gb|EGJ70746.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides coprosuis DSM
           18011]
          Length = 906

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 147/766 (19%), Positives = 286/766 (37%), Gaps = 115/766 (15%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +N+   EN+K   L    E  +L YA   I ERA+P + DG KPV RRI+H+M  M    
Sbjct: 18  NNSSSPENIKH-HLTGMYESWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRM---D 73

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFGNI-DGDSA 126
              + K A IVG  + + HPHGD S+ D+L++L Q  F     LI  QGN+GNI  GD A
Sbjct: 74  DGRYNKVANIVGHTM-QFHPHGDASIGDALIQLGQKDF-----LIDCQGNWGNILTGDRA 127

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++ A  ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG
Sbjct: 128 AAPRYIEARLSKFALEVV--FNPKTTEWQKSYDGRNKEPITLPLKFPLLLAQGAEGIAVG 185

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           +++ I  HN  E+CEA++  ++  +        + + PDF TGG +  +R      Y  G
Sbjct: 186 LSSKILPHNFNELCEASINYLNGKK--------FTLYPDFQTGGYVDVAR------YNDG 231

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G  V+ R  + ++   +  I  TEIP+    + +I+ I + +   +I + +   + SA
Sbjct: 232 ERGGNVKVRAKINKIDNRTLSI--TEIPFGKTTTSVIDSILKAVDKGKIKIRKVDDNTSA 289

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
               I        +  D  +++++  +D E     N  V+   + P  + +  +LK+ + 
Sbjct: 290 NVEII--VHLPSGVSSDKTIDALYAFTDCEVSISPNCCVIDDNK-PHFLTVSDVLKKSVD 346

Query: 367 HRREVLFRRSSFRMQAIDRRVE--------ILKGLLIAYLNID-EIIAIIRNEDKPKPVM 417
           +  ++L +    R   ++  +         I + +       + + +         +   
Sbjct: 347 NTLDLLQKELEIRKSELEEGLHLASLEKIFIEERIYKDKEFENAKNMDAACKHIDKRLTP 406

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + E   + IL L    + ++ ++      + +L   ++I+ +           + 
Sbjct: 407 FYPKLIREVTKEDILKLMEIKMGRILKFNTNKAEEGILKMMKEIEEINKELSNMIAYTSR 466

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
             + +++ + K         +F  +         Q +        + ++           
Sbjct: 467 WFKMLQDKYGKDHPRLTEIRSFDNIEITKVVEANQKLYFNADEGFMGTDL---------- 516

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
                         +   +    D I++   +G     P  +          I   +   
Sbjct: 517 -----------KGGEFINNCSDFDDIIIFYKNGTYMITPVADKKFIGKDVIHI--DVFQK 563

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            ++  +   VY    +  +            + +            +  ++         
Sbjct: 564 DDERTIYNVVYRDGKEGGI----HYIKRFFVTSV------------IRDKDYDVT-QGTP 606

Query: 658 GDHVAVVGE--NRKL--------LI-----------FSID--QIPEMSR-GKG------- 686
           G  +       N +         +            F  D  +I    +  KG       
Sbjct: 607 GSEIVYFSSNPNGEAEVIHVSLKIRRSERNRIRKTEFDEDFSEIGIKGKQAKGNILTKRD 666

Query: 687 VRLQSYKDGGISDVICFKI--CEGLTWIDSAGRSYNRSENDLLGWL 730
           V+  + K+ G S +    I     +  ++   R     E      +
Sbjct: 667 VKKITLKEQGGSTLGGVDIWFDPDVKKLNHDERGLYLGEFTDEDRI 712


>gi|319955665|ref|YP_004166932.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga algicola DSM
           14237]
 gi|319424325|gb|ADV51434.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga algicola DSM
           14237]
          Length = 886

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 130/539 (24%), Positives = 243/539 (45%), Gaps = 46/539 (8%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN  N     ++++  V      ++ +L YA   I ERA+P + DGFKPV RRI+HA+ E
Sbjct: 16  DNQENQEN-TQDSLTKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHALKE 72

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-D 122
           +       + K A +VG  + + HPHGD S+ D++V++ Q    +  LI  QGN+GNI  
Sbjct: 73  L---DDGRYNKVANVVGHTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILT 124

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDSAAA RY EAR+++ A  ++         ++ +Y+    EP   P KFP LLA G  G
Sbjct: 125 GDSAAASRYIEARLSKFALEVV--FSPKITAWQSSYDGRKKEPTNLPVKFPLLLAQGAEG 182

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVG++T +  HN  E+ ++++  +   +        + I PDFPT GII  S      +
Sbjct: 183 IAVGLSTKVLPHNFIELIDSSIKHLKGQK--------FTIFPDFPTSGIIDVS------N 228

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G  G ++R R  + ++ + +  +V+ EIPY    S LI+ I +    K    +  I 
Sbjct: 229 YNDGIRGGKIRVRAKISQLDKST--LVINEIPYGTNTSSLIDSILKA-NEKGKIRVRKIE 285

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D +A DV I+       L PD  +++++  +  E+       ++   + P  + +  +L+
Sbjct: 286 DNTAADVEIL-IHLPSGLSPDKTIDALYAFTACESSISPLGCIIEDNK-PLFIGVTEMLQ 343

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIR--------NEDK 412
               +  E+L      +++ ++ +     L+ + I      +I             ++  
Sbjct: 344 RSTDYTVELLRAELEVQLRELEEQWHFASLERIFIENRIYRDIEEQETWEGVIKAIDDGL 403

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
              +   + ++TE  +  +  +R++ + K +  + +  +D L  +  ++ + L       
Sbjct: 404 KPYIKHLKRAVTEEDIARLTEIRIKRISKFDIDKAQQLIDGLEEKIAEVKNHL---AHII 460

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
                  + +K  + K  +       F ++     A     +        + ++     
Sbjct: 461 EFAIDYFKNLKSKYGKDRERKSEIRIFDDIEATKVAIRNTKLYVNREEGFLGTSLKRDE 519


>gi|117654319|gb|ABK55590.1| DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 223

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETPSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            E+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 PELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|167861158|gb|ACA05282.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 112/148 (75%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 GASGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|219815931|gb|ACL37052.1| GyrA [Salmonella enterica]
          Length = 127

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/127 (57%), Positives = 100/127 (78%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+V
Sbjct: 1   EEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  
Sbjct: 61  IGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHE 120

Query: 143 ILQGVDE 149
           ++  +++
Sbjct: 121 LMADLEK 127


>gi|154493432|ref|ZP_02032752.1| hypothetical protein PARMER_02770 [Parabacteroides merdae ATCC
           43184]
 gi|154086642|gb|EDN85687.1| hypothetical protein PARMER_02770 [Parabacteroides merdae ATCC
           43184]
          Length = 910

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 136/586 (23%), Positives = 231/586 (39%), Gaps = 43/586 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    ++ +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 58  LSGMYQDWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRL---DDGRYNKVANIVGH 114

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 115 TM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA 169

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+ 
Sbjct: 170 LETV--FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELL 227

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++A +   E        + + PDF TGG I  S+      Y  G  G  V+ R  +  
Sbjct: 228 DASVAYLRGEE--------FTLYPDFQTGGYIDVSK------YNDGERGGSVKVRAKIT- 272

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  +V++EIPY    S LIE I +    K    ++ + D +A +V I+       +
Sbjct: 273 -KLDNKTLVISEIPYGKTTSTLIESILKA-NDKGKIKIKKVDDNTARNVEIL-VHLAPGV 329

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P  + +  +LK        +L      + 
Sbjct: 330 SSDKTIDALYAFTDCEISISPNCCVIMDNK-PHFLTVSDVLKHSTDDTLHLLRTELEIQK 388

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             ++  +       I                     +              ++ RL   +
Sbjct: 389 GELEESLFFASLEKIFIEERIYKDKEFEEAKDMDEAIAH------------IDRRLDLFK 436

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                ++  E    L E +    L  +  +    IA    ++ +I      +      + 
Sbjct: 437 PHFIREVTREDILKLMEIKMGRILKFNTDKCNATIAQYKEDIAKIDDHLAHIVDYTADWF 496

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
            + +         M E      + + +    + K +               +   +    
Sbjct: 497 MMLKEKYGKNYPRMTEVRNFDTIEATKVVEANEKLYINRAEGFIGTGLKKDEFVCNCSDI 556

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D I+L   +G    +         G       +   N N+ I    
Sbjct: 557 DDIILFYRNGTYKVVKVSE-KMFVGRDILYLNVFKRNDNRTIYNVI 601


>gi|117654305|gb|ABK55583.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R    ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGXRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TELPYQVNKARLIEKIADLVXDKKIEGITDLRDESDRNGMRIVI 223


>gi|116089891|gb|ABJ55665.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 143

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/143 (58%), Positives = 113/143 (79%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYGTIVRMAQPFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 173 PNLLANGTSGIAVGMATSIPSHN 195
           PNLL NG+SGIAVGMAT+IP HN
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHN 143


>gi|325287882|ref|YP_004263672.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga lytica DSM 7489]
 gi|324323336|gb|ADY30801.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga lytica DSM 7489]
          Length = 879

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 126/574 (21%), Positives = 242/574 (42%), Gaps = 64/574 (11%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+       + K A +VG  + + 
Sbjct: 30  KDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKEL---DDGRYNKVANVVGHTM-QY 85

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V++ Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A  ++ 
Sbjct: 86  HPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDRAAASRYIEARLSKFALDVV- 140

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
                  +++ +Y+    EPV  P KFP LLA G  GIAVG++T I  HN  E+ ++++ 
Sbjct: 141 -FSPKITEWQQSYDGRKKEPVNLPVKFPLLLAQGAEGIAVGLSTKILPHNFIELIDSSIK 199

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +   +  +         PDFPT GII  +       Y  G  G ++R R  + +  + +
Sbjct: 200 HLKGQKFKLF--------PDFPTSGIIDVT------GYNDGLRGGKIRVRAKISQSDKNT 245

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             +V++EIPY    S LI+ I +    K    ++ I D +A DV I+       + PD  
Sbjct: 246 --LVISEIPYGTNTSSLIDSILKA-NDKGKIKIKKIEDNTAADVEIL-VHLPAGISPDKT 301

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +  E+       ++   + P  + +  +L+    +  E+L      ++  ++ 
Sbjct: 302 IDALYAFTACESSISPLGCIIEDNK-PLFIGVTEMLQRSTDYTVELLKEELEIQLGELEE 360

Query: 386 RVEIL--KGLLIAYLNIDEIIAIIR--------NEDKPKPVMVSRFSLTENQVDAILNLR 435
           +      + + I      +I             ++         + ++TE  +  +  +R
Sbjct: 361 QWHFSSLERIFIENRIYRDIEEEETWEGVIAAIDKGLKPHTKHLKRAVTEEDITRLTEIR 420

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           ++ + K +  + +  LD+L         + ++ +          + +K+ + K  +    
Sbjct: 421 IKRISKFDLDKAQQLLDSLEERI---AEVKHNLEHLVEFAINYFKNLKDKYGKGRERKSE 477

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
              F ++           +        V ++                             
Sbjct: 478 IRVFDDIEATKVVIRNTKLYVNREEGFVGTSLKKDE---------------------YVT 516

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                D I++ + DG        + +    +   
Sbjct: 517 DCSDIDDIIVFTKDGHMMVSKVDSKIFVGKNIIH 550


>gi|53711702|ref|YP_097694.1| DNA topoisomerase IV subunit A [Bacteroides fragilis YCH46]
 gi|60679941|ref|YP_210085.1| DNA topoisomerase IV subunit A [Bacteroides fragilis NCTC 9343]
 gi|253564240|ref|ZP_04841697.1| topoisomerase IV subunit A [Bacteroides sp. 3_2_5]
 gi|52214567|dbj|BAD47160.1| topoisomerase IV subunit A [Bacteroides fragilis YCH46]
 gi|60491375|emb|CAH06123.1| putative topoisomerase [Bacteroides fragilis NCTC 9343]
 gi|251948016|gb|EES88298.1| topoisomerase IV subunit A [Bacteroides sp. 3_2_5]
 gi|301161466|emb|CBW21006.1| putative topoisomerase [Bacteroides fragilis 638R]
          Length = 851

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 129/592 (21%), Positives = 239/592 (40%), Gaps = 67/592 (11%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + 
Sbjct: 3   QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRM---DDGRYNKVANIVGHTM-QF 58

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q    +  L+  QGN+GNI  GD AAA RY EAR+++ A  ++ 
Sbjct: 59  HPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV- 113

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++
Sbjct: 114 -FNPKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIS 172

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            + N E  +         PDF TGG I  S+      Y  G  G  V+ R  + +V   +
Sbjct: 173 YLRNEEFKLY--------PDFQTGGSIDVSK------YNDGERGGAVKIRSKINKVDNKT 218

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I  TEIPY    + +I+ I + +   +I  +  + D +A +V I+          D  
Sbjct: 219 LAI--TEIPYGRTTTSVIDSILKAVDKGKIK-IRKVDDNTAANVEIL-VHLAPGTSSDKT 274

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +D E     N  V+   + P  + +  +L++   +   +L +    +   +  
Sbjct: 275 IDALYAFTDCEVSISPNCCVIDDQK-PHFLTISHVLRKSADNTLSLLRQELEIKKDELQE 333

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------VMVSRFSLTENQVDAILN 433
            +       I                                       +T++ +  ++ 
Sbjct: 334 NLHFASLEKIFIEERIYKDKEFEQSKDMDAACEHIDRRLTPFYSQFIREVTKDDILRLME 393

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +++  + K    + +  +  +  +  +I++ L +  +   Q    ++E    + K+    
Sbjct: 394 IKMGRILKFNSDKAEEAIARMNEDIAEINNHLANIVEYTIQWYRMLKE---KYGKNFPRR 450

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
                F  +  A      + +        + ++                           
Sbjct: 451 TELRNFDTIEAAKVVEANEKLYINREEGFIGTSLKKDE---------------------F 489

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
                  D +++   DG+    P  +     G       +   N  + I   
Sbjct: 490 VACCSDIDDVIIFYRDGRYMVTPVAD-KKFVGKNVIYVNVFKKNDKRTIYNV 540


>gi|226451953|gb|ACO59156.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451959|gb|ACO59159.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 80/138 (57%), Positives = 105/138 (76%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 185 VGMATSIPSHNVQEICEA 202
           VGMAT+IP HN+ E+ + 
Sbjct: 121 VGMATNIPPHNLTEVIDG 138


>gi|265765085|ref|ZP_06093360.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_16]
 gi|263254469|gb|EEZ25903.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_16]
          Length = 851

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 130/592 (21%), Positives = 239/592 (40%), Gaps = 67/592 (11%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + 
Sbjct: 3   QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRM---DDGRYNKVANIVGHTM-QF 58

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q    +  L+  QGN+GNI  GD AAA RY EAR+++ A  ++ 
Sbjct: 59  HPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV- 113

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++
Sbjct: 114 -FNPKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIS 172

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            + N E  +         PDF TGG I  S+      Y  G  G  V+ R  + +V   +
Sbjct: 173 YLRNEEFKLY--------PDFQTGGSIDVSK------YNDGERGGAVKIRSKINKVDNKT 218

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I  TEIPY    + +I+ I + +   +I  +  + D +A +V I+          D  
Sbjct: 219 LAI--TEIPYGRTTTSVIDSILKAVDKGKIK-IRKVDDNTAANVEIL-VHLAPGTSSDKT 274

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +D E     N  V+   + P  + +  +LK+   +   +L +    +   +  
Sbjct: 275 IDALYAFTDCEVSISPNCCVIDDQK-PHFLTISHVLKKSADNTLSLLRQELEIKKDELQE 333

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------VMVSRFSLTENQVDAILN 433
            +       I                                       +T++ +  ++ 
Sbjct: 334 NLHFASLEKIFIEERIYKDKEFEQSKDMDAACEHIDRRLTPFYSQFIREVTKDDILRLME 393

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +++  + K    + +  +  +  +  +I++ L +  +   Q    ++E    + K+    
Sbjct: 394 IKMGRILKFNSDKAEEAIARMNEDIAEINNHLANIVEYTIQWYRMLKE---KYGKNFPRR 450

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
                F  +  A      + +        + ++                           
Sbjct: 451 TELRNFDTIEAAKVVEANEKLYINREEGFIGTSLKKDE---------------------F 489

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
                  D +++   DG+    P  +     G       +   N  + I   
Sbjct: 490 VACCSDIDDVIIFYRDGRYMVTPVAD-KKFVGKNVIYVNVFKKNDKRTIYNV 540


>gi|255010001|ref|ZP_05282127.1| DNA topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
 gi|313147794|ref|ZP_07809987.1| topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
 gi|313136561|gb|EFR53921.1| topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
          Length = 882

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 132/616 (21%), Positives = 236/616 (38%), Gaps = 56/616 (9%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFA---------LEERYLAYALSTIKERAIPDLRDGFK 51
           M  +N  N  T    + K                 +  +L YA   I ERA+P + DG K
Sbjct: 1   MSEEN--NEITEGHSDYKPADSHNESIKHQLTGMYQNWFLDYASYVILERAVPHINDGLK 58

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRI+H+M  M       + K A IVG  + + HPHGD S+ D+LV+L Q    +  L
Sbjct: 59  PVQRRILHSMKRM---DDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLL 110

Query: 112 ISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           +  QGN+GNI  GD AAA RY EAR+++ A  ++   +    +++ +Y+  + EP+  P 
Sbjct: 111 VDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPITLPV 168

Query: 171 KFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGG 230
           KFP LLA G  GIAVG+++ I  HN  E+C+A+++ + N E  +         PDF TGG
Sbjct: 169 KFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLRNEEFKLY--------PDFQTGG 220

Query: 231 IIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
            I  S+      Y  G  G  V+ R  + +V   +  I  TEIPY    + +I+ I + +
Sbjct: 221 SIDVSK------YNDGERGGAVKIRSKINKVDNKTLAI--TEIPYGRTTTSVIDSILKAV 272

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
              +I  +  + D +A +V I+          D  +++++  +D E     N  V+   +
Sbjct: 273 DKGKIK-IRKVDDNTAANVEIL-VHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDQK 330

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
            P  + +  +L++   +   +L +    +   +   +       I               
Sbjct: 331 -PHFLTISHVLRKSADNTLSLLRQELEIKKDELQESLHFASLEKIFIEERIYKDKEFEQS 389

Query: 411 DKPK-PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                        LT      I  +           +        +     +    +  +
Sbjct: 390 KDMDAACAHIDERLTPFYSQFIREVT----------KEDILRLMEIKMGRILKFNSDKAE 439

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +   ++  +I E+    +   +       +  + +           E      + + +  
Sbjct: 440 EAIARMNEDIAEINNHLANIVEY---TIQWYRMLKDKYGKNFPRRTELRNFDTIEAAKVV 496

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
             + K +               +        D +++   DG+    P  +     G    
Sbjct: 497 EANEKLYINREEGFIGTSLKKDEFVACCSDIDDVIIFYRDGRYMVTPVAD-KKFVGKNVI 555

Query: 590 IQLLIDLNHNQDIVTA 605
              +   N  + I   
Sbjct: 556 YVNVFKKNDKRTIYNV 571


>gi|317478494|ref|ZP_07937654.1| topoisomerase IV [Bacteroides sp. 4_1_36]
 gi|316905383|gb|EFV27177.1| topoisomerase IV [Bacteroides sp. 4_1_36]
          Length = 893

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 131/656 (19%), Positives = 246/656 (37%), Gaps = 67/656 (10%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRM---EDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  L+  QGN+GNI  GDSAAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDSAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A+++ + N E  +         PDF TGG I  S+      Y  G  G  +R R  +E+
Sbjct: 210 DASISYLHNEEFKLY--------PDFQTGGSIDVSK------YNDGERGGAIRVRSKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +   +  I   EIPY    + + + I +     +I  +  + D ++  V I+       +
Sbjct: 256 IDNKTLAI--KEIPYGKTVASVCDSIVKASEKGKIK-IRKVEDLTSGSVEIL-VHLAPGV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P  + +  +L++ + +   +L +    R 
Sbjct: 312 SSDKTIDALYAFTDCEVSISPNCCVIDDQK-PHFLTVSDVLRKSVDNTLALLRQELEIRK 370

Query: 381 QAIDRRVEILKG------LLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------LTENQV 428
             I   +             I      E    +    +     ++ +       +T+  +
Sbjct: 371 GEILESLHFASLEKIFIEERIYKDKEFEQAKNMDAACEHIDERLTPYYPTFIREVTKEDI 430

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             ++ +++  + K    + +  +  +  + E+ID  L +            R +K+ + K
Sbjct: 431 LRLMEIKMARILKFNSDKAEELIARMKKDIEEIDRHLAN---IVEYTVDWFRMLKDKYGK 487

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG------WIRSLKSHSVDLSA 542
                     F  +         + +        + +             +    +    
Sbjct: 488 DFPRHTELRNFDTIEATKVIEANEKLYINREEGFIGTGLKKDEFIGNCSPIDDVIIFFRD 547

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             +                   +   + K             G     +  +        
Sbjct: 548 GKYIITPVADKKFVGKNILYANIFKKNDKRTIYNVCYRDGKEGTSYIKRFAVTSVVRDRE 607

Query: 603 VTAFVYDSTCKLLVVSSK----GNAFIVEE------------SEIIANTRKGKTFL 642
                     ++   ++          V               +      KG+  +
Sbjct: 608 YDVTQGTPDSRITYFTANPNGEAEIIKVTLKPNPRVRRIIFEEDFSNINIKGRQAM 663


>gi|153808895|ref|ZP_01961563.1| hypothetical protein BACCAC_03196 [Bacteroides caccae ATCC 43185]
 gi|149128228|gb|EDM19447.1| hypothetical protein BACCAC_03196 [Bacteroides caccae ATCC 43185]
          Length = 881

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 147/696 (21%), Positives = 262/696 (37%), Gaps = 73/696 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DENVKHQ-LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRL---DDGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A++  +   E  +         PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASINYLRGEEFQLY--------PDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++   +  I  TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKINKLDNKTLAI--TEIPYGKTTSSVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                     D  +++++  +D E     N  V+   + P  + +  +LK+   +  ++L
Sbjct: 294 -VHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSK-PHFLTVSKVLKKSADNTLDLL 351

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVDAI 431
            +    +   I   +       I                            LT      I
Sbjct: 352 KQELEIKKGEILEALHFASLEKIFIEERIYKDKEFEQSKDMDAACEHIDERLTPFYPSFI 411

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
             +           +        +     +    +   +   ++  +I E+ +  +   D
Sbjct: 412 REVT----------KEDILKLMEIKMGRILKFNSDKADELIARMKEDIAEIDDHLAHIVD 461

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                  + ++ +           E      + + +    + K +               
Sbjct: 462 Y---TVNWYQMLKNKYGKNFPRRTELRNFDTIEAAKVVEANEKLYINREEGFIGTALKKD 518

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           +   +    D +++   DGK    P  +     G       +   N  + I      D  
Sbjct: 519 EFVANCSDIDDVIVFFRDGKYIVTPVAD-KKFVGKNILYVNVFKKNDKRTIYNVTYRDGK 577

Query: 612 CKLLVVSSKGNAFIVEESEIIANTR---------KGKTFL--KVSSEEKMKLVVKVTGDH 660
                 ++         + ++ +              T+     + E ++  V       
Sbjct: 578 E----GTT--YIKRFAVTSVVRDREYDVTQGTPDSRITYFSANPNGEAEIIKVTLKPNPR 631

Query: 661 VAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYK 693
           V       + +IF     +I    R  +GV L    
Sbjct: 632 V-------RRIIFERDFSEISIKGRQAQGVILTRLP 660


>gi|255692614|ref|ZP_05416289.1| DNA topoisomerase 4 subunit A [Bacteroides finegoldii DSM 17565]
 gi|260621674|gb|EEX44545.1| DNA topoisomerase 4 subunit A [Bacteroides finegoldii DSM 17565]
          Length = 881

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 150/716 (20%), Positives = 267/716 (37%), Gaps = 84/716 (11%)

Query: 6   ISNSNTLVEE---NVKAVSLRFA---------LEERYLAYALSTIKERAIPDLRDGFKPV 53
           +S+    + E   + K    R            +  +L YA   I ERA+P + DG KPV
Sbjct: 1   MSDEINEIPEGHSDYKPADARDESVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKPV 60

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
            RRI+H+M  +       + K A IVG  + + HPHGD S+ D+LV+L Q    +  LI 
Sbjct: 61  QRRILHSMKRL---DDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLID 112

Query: 114 GQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            QGN+GNI  GD AAA RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KF
Sbjct: 113 CQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKF 170

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
           P LLA G  GIAVG+++ I  HN  E+C+A+++ +   E  +         PDF TGG I
Sbjct: 171 PLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLRGEEFQLY--------PDFQTGGSI 222

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
             ++      Y  G  G  V+ R  + ++   +  I  TEIPY    S +I+ I + +  
Sbjct: 223 DVAK------YNDGERGGAVKVRAKITKIDNKTLAI--TEIPYGKTTSTVIDSILKAVDK 274

Query: 293 KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
            +I  +  + D +A +V I+          D  +++++  +D E     N  V+   + P
Sbjct: 275 GKIK-IRKVDDNTAANVEIL-VHLAPGTSSDRTIDALYAFTDCEVSISPNCCVIDDSK-P 331

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
             + +  +LK+   +  ++L +    +   I   +       I                 
Sbjct: 332 HFLTISKVLKKSADNTLDLLKQELEIKKGEILEALHFASLEKIFIEERIYKDKEFEQSKD 391

Query: 413 PK-PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                      LT      I  +    + KL E ++                L  +  + 
Sbjct: 392 MDAACEHIDKRLTPYYPQFIREVTKEDILKLMEIKMG-------------RILKFNSDKA 438

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              IA    E+ EI +    +      + ++ +           E      + + +    
Sbjct: 439 DELIAKMKEEIAEIDNHLAHIVDYTVNWYQMLKNKYGKNFPRRTELRNFDTIEAAKVVEA 498

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           + K +               +        D +++   DGK    P  +     G      
Sbjct: 499 NEKLYINREEGFIGTSLKKDEFVACCSDIDDVIIFFRDGKYIVTPVAD-KKFVGKNVLYV 557

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR---------KGKTFL 642
            +   N  + I      D        ++         + ++ +              T+ 
Sbjct: 558 NVFKKNDKRTIYNVAYRDGKE----GTT--YVKRFAVTSVVRDREYDVTQGTPDSRITYF 611

Query: 643 --KVSSEEKMKLVVKVTGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYK 693
               + E ++  V       V       + +IF     ++    R  +G+ L    
Sbjct: 612 SANPNGEAEIIKVTLKPNPRV-------RRIIFEQDFSEVGIKGRQARGIILTRLP 660


>gi|117654211|gb|ABK55536.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYESHVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|260910051|ref|ZP_05916733.1| DNA topoisomerase 4 subunit A [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635819|gb|EEX53827.1| DNA topoisomerase 4 subunit A [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 913

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 140/597 (23%), Positives = 243/597 (40%), Gaps = 44/597 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P++ DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 52  LSGMYQNWFLDYASYVILERAVPNIADGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 108

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV++ Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 109 TM-QFHPHGDASIGDALVQMGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 163

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +     ++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN++E+C
Sbjct: 164 LDTV--FNPKTTQWQASYDGRNKEPISLPVKFPLLLAQGAEGIAVGLSSKILPHNMRELC 221

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EAA+  +      +         PDFPTGG I  SR      Y  G+ G  ++ R  +  
Sbjct: 222 EAAIHYLKGEPFRLY--------PDFPTGGSIDASR------YNDGQRGGSIKVRAKI-- 265

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               S  +V+ EIP+    + LI+ I + +   +I   + + D +A +V I        +
Sbjct: 266 EKLDSKTLVIREIPFSKNTTTLIDSILKAVDKGKIK-AKRVDDNTAAEVEIQ-VHLAPGV 323

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  SD E     N  V+   + P+ + +  +L+  +     +L      R 
Sbjct: 324 SSDKTIDALYAFSDCEINISPNCCVIEDNK-PRFLTVSEVLRHNVDSTMGLLRLELQIRK 382

Query: 381 QAIDRRVEILKGLLIAY-LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
             +  ++       I     I +       E+    V      L   + D I  LR   +
Sbjct: 383 DELLEQLFFSSLEKIFIEERIYKDKKFENAENMDAAVEHIDNRLEPFKPDFIRELRRDDI 442

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            +L E +++               L  S  +    +A    E+  I      +      +
Sbjct: 443 MRLMEIKMQ-------------RILKFSKDKADELLARIKEEIAGIDHDLAHMTDVTIKW 489

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +            + E +    + + +    + K +               +   +   
Sbjct: 490 FKFLIEKYGKDHPRLTEIKSFETIEATKVVEANEKLYINRREGFIGTGLKKDEFVCNCSD 549

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            D IL+   DGK   +   + +    +   +Q+    +        +         +
Sbjct: 550 IDDILVFHRDGKYKVMRVADKIFVGKNVMHVQVYKRNDRRTTYNVVYRDGKEGYYFI 606


>gi|332879118|ref|ZP_08446819.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332682918|gb|EGJ55814.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 866

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 147/727 (20%), Positives = 284/727 (39%), Gaps = 93/727 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  + +  S     +++  + +    ++ +L YA   I ERA+P + DGFKPV RRI+H+
Sbjct: 1   MEENELQTSAAHPNDSI--IKITGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRIMHS 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           + E+       + K A +VG  + + HPHGD S+ D++V++ Q    +  LI  QGN+GN
Sbjct: 59  LKEL---DDGRYNKVANVVGNTM-QYHPHGDASIGDAIVQIGQ----KELLIDTQGNWGN 110

Query: 121 -IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            + G  AAA RY EAR+++ A  ++        +++ +Y+    EP+  P KFP LLA G
Sbjct: 111 TLTGADAAAPRYIEARLSKFALDVV--FSPKVTEWQSSYDGRKREPISLPVKFPLLLAQG 168

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           T GIAVG++T I  HN  E+ +A++A +      +         PDFPT GI+  S    
Sbjct: 169 TEGIAVGLSTKILPHNFIELIDASVAYLQGKPFELY--------PDFPTAGIMDVS---- 216

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
              Y  G  G RVR R  + ++ + +  +V+ EIP+      LI+ I +    K    ++
Sbjct: 217 --GYNDGARGGRVRVRAKISQLDKST--LVINEIPFTTTTKTLIDSILKA-NDKGNIKIK 271

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            + D +A DV I+         PD  +++++  +  ET       V+   + P  + +  
Sbjct: 272 KVDDNTAADVEIL-VHLPNGSSPDKTIDALYAFTACETAISPITCVIEDNK-PHFLTVSE 329

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVE---------ILKGLLIAYLNIDEIIA---II 407
           +L+       ++L +     ++ +  +             +  +       +        
Sbjct: 330 VLRRSTDRTVDILKQELEITLEELHLQWHKASLEKIFIREEMYINFKDKKYKNKELLYQY 389

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
             +            +T++ ++ +  + +  +   + Y+ + ++  + A+ E++      
Sbjct: 390 LYDRFEPFKKDLLREITDDDLERLTQIPMIRITNFDTYRAEEQMLKIEADIEEV------ 443

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            K     +        E   K+   GR R T   V    +AT                 +
Sbjct: 444 -KNHLAHLVDYAIAHFERLKKTYSKGRERKTEIRVFDTIEAT-----------------K 485

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R+ K +               +        D +++ +  G  Y            + 
Sbjct: 486 VVVRNTKLYVNRAEGFVGTGLRKDEYVGDCSEIDDVIVFTESGAMYVTKVAEKQYIEKNI 545

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             +   +    ++  +   +Y                    + I  + +     +    E
Sbjct: 546 IHV--AVFKKDDKRTIYNMIYKDGQTGF-----SYIKRFNVTGITRDKKY--ELIPQHKE 596

Query: 648 EKMKLVVKVTGDHVAVVGEN-RKL-----LIFSIDQIPEMSRGKGVRL----------QS 691
            ++            VV  N R+L     L + ID    + +G+GV+             
Sbjct: 597 SRVLYFTANPNGEAEVVTVNLRQLGTLRKLRWDIDFADTLIKGRGVKGNLVSKYAIKRIE 656

Query: 692 YKDGGIS 698
            K+ G+S
Sbjct: 657 LKEKGVS 663


>gi|254729444|gb|ACT79806.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 131

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 73/125 (58%), Positives = 99/125 (79%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKS
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 136 MTQVA 140
           + ++A
Sbjct: 127 LAKIA 131


>gi|77166860|gb|ABA62406.1| DNA gyrase subunit A [Parachlamydia acanthamoebae]
          Length = 144

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 66/143 (46%), Positives = 97/143 (67%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              +++ YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +K A+I G+ 
Sbjct: 2   EDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISGDT 61

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
            G  HPHG+Q +Y +LVR+AQ ++ RYPL+ GQGNFG++DGD  AA RYTEAR+T  +  
Sbjct: 62  SGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTEARLTHASVQ 121

Query: 143 ILQGVDEDAVDFRDTYNEEDSEP 165
           +++ +D++ V+    YNE   EP
Sbjct: 122 LMEDLDKNTVEMVPNYNETKKEP 144


>gi|68010496|ref|XP_670772.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56486339|emb|CAI03944.1| hypothetical protein PB301451.00.0 [Plasmodium berghei]
          Length = 267

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 101/238 (42%), Positives = 154/238 (64%), Gaps = 3/238 (1%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA-FKKSAR 77
            V +   L + +L+YA   I  R + D RDG K V RRII +M E+   +    +KK AR
Sbjct: 6   DVEICELLSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGYDKKSYKKCAR 65

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVGEVIGK HPHGD+SVYD+L+RLAQ       LI+G GNFG+++  +AAA RYTEAR++
Sbjct: 66  IVGEVIGKYHPHGDKSVYDALIRLAQKHHNNNLLINGYGNFGSVEY-NAAAMRYTEARIS 124

Query: 138 QVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
               +++L  ++++ +D+   ++  + EP V  SK P LL NG SGIAV + T+IPSHN+
Sbjct: 125 DFCYDVLLDEINDENIDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIAVSILTNIPSHNI 184

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            ++  A++  + N +I+ ++L   I  PDF TGGII+ +++++ + Y  G+G   +R+
Sbjct: 185 VDVINASINFLINEKITHDELFNIIXAPDFSTGGIIIANKDTLRDIYHTGKGNIVIRS 242


>gi|332520464|ref|ZP_08396926.1| DNA topoisomerase (ATP-hydrolyzing) [Lacinutrix algicola 5H-3-7-4]
 gi|332043817|gb|EGI80012.1| DNA topoisomerase (ATP-hydrolyzing) [Lacinutrix algicola 5H-3-7-4]
          Length = 907

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 155/755 (20%), Positives = 291/755 (38%), Gaps = 103/755 (13%)

Query: 1   MGVDNISNSNTLVEENVKAVS----LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           M  D   +      EN +       +    +E +L YA   I ERA+P + DGFKPV RR
Sbjct: 1   MTEDQNDDLTNENLENQEPQETITRITGMYKEWFLDYASYVILERAVPAIEDGFKPVQRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I+H+M ++       + K A IVG  + + HPHGD S+ D++V++ Q    +  LI  QG
Sbjct: 61  IMHSMKDL---DDGRYNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQG 112

Query: 117 NFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           N+GNI  GD AAA RY EAR+++    ++   +    +++ +Y+    EPV  P  FP L
Sbjct: 113 NWGNILTGDRAAASRYIEARISKFGLDVVY--NPKITEWQQSYDGRRKEPVNLPVMFPLL 170

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           LA G  GIAVG++T I  HN  E+ EA++  +            + + PDFPT GI   S
Sbjct: 171 LAQGGEGIAVGLSTKILPHNFIELIEASIKHLQGK--------RFTLVPDFPTAGIADFS 222

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
                 +Y  G  G +VR R  + +V + +  I  TEIPY    S LI+ I +    K  
Sbjct: 223 ------NYNDGLRGGKVRVRAKISQVDKTTLAI--TEIPYGTTTSSLIDSILKA-NDKGK 273

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             ++ I D +A +V I+       L PD  +++++  +  E+       V+   + P  +
Sbjct: 274 IKIKKIEDNTAAEVEIL-IHLPSGLSPDKTIDALYAFTSCESSISPLGCVIEDNK-PLFI 331

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIR----- 408
            +  +L+    +  ++L +    ++   + +     L+ + I      +I          
Sbjct: 332 GVTEMLRRSTDNTVQLLKQELEIKLGEFEEQWHFASLERIFIENRIYRDIEEEETWDGVI 391

Query: 409 ---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
              ++     +   + ++T   +  +  +R++ + K +  + + ++D L  +  ++   L
Sbjct: 392 NAIDKGLQPHIKHLKRAVTVEDITRLTEIRIKRISKFDIDKAQQKIDALEEQIAEVKHHL 451

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            +     +        +K+ + +  +       F +V           +        + +
Sbjct: 452 AN---LIDYAIAYFSRLKKEYGEGKERKTEIRAFEDVDATKVVIRNTKLYVNREEGFIGT 508

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
           +                                  D I+  +  GK       +      
Sbjct: 509 SLRRDE---------------------YVCDCSDIDDIIAFTASGKMMVTKVDSKTFIGK 547

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT----RKGKTF 641
           +   +   +    ++  +   +Y    K               + +  +       G   
Sbjct: 548 NIIHV--AVFKKKDKRTIYNMIYRDGTKG-----ASYIKRFAVTSMTRDREYDLTNGSKG 600

Query: 642 LKV-------SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG-KG------ 686
            K+       + E ++  V          VG  +KL        I    R  KG      
Sbjct: 601 SKLWYFSANPNGEAEVISVFLRQ------VGSVKKLKWDIDFADILIKGRASKGNVVTKY 654

Query: 687 -VRLQSYKDGGISDVICFKI--CEGLTWIDSAGRS 718
            ++    K+ G+S +   KI   + +  ++  GR 
Sbjct: 655 AIKKIELKEEGVSTLKPRKIWFDDAVQRLNVDGRG 689


>gi|224536481|ref|ZP_03677020.1| hypothetical protein BACCELL_01355 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521923|gb|EEF91028.1| hypothetical protein BACCELL_01355 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 892

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 144/703 (20%), Positives = 269/703 (38%), Gaps = 61/703 (8%)

Query: 2   GVDNISNSNTLVEENVK-AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           G +  S+      ++VK    L    +  +L YA   I ERA+P + DG KPV RRI+H+
Sbjct: 19  GSEGHSDYKPADTKDVKAKYQLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHS 78

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  +       + K A IVG  + + HPHGD S+ D+LV+L Q    +  L+  QGN+GN
Sbjct: 79  MRRL---EDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLVDCQGNWGN 130

Query: 121 I-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           I  GD AAA RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G
Sbjct: 131 ILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQG 188

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVG+++ I  HN  E+C+A++  +   E  +         PDF TGG I  S+   
Sbjct: 189 VEGIAVGLSSKILPHNFNELCDASIHYLHEEEFKLY--------PDFQTGGSIDVSK--- 237

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
              Y  G  G  VR R  +E++   +  I   EIPY    + + + I +     +I  ++
Sbjct: 238 ---YNDGERGGAVRIRAKIEKIDNKTLAI--KEIPYGKTVASVCDSIVKASEKGKIK-IK 291

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            + D ++ +V I+       +  D  +++++  +D E     N  V+   + P  + +  
Sbjct: 292 KVEDLTSGNVEIL-VHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDDQK-PHFLTVSN 349

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY-LNIDEIIAIIRNEDKPKPVMV 418
           IL++ + +   +L +    R   I   +       I     I +     + ++       
Sbjct: 350 ILRKSVDNTLSLLRQELEIRKDEILESLHFASLEKIFIEERIYKDKEFEQAQNMDAACEH 409

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               LT      +  +           +        +     +    +  ++   ++  +
Sbjct: 410 IDERLTPYYPQFVREVT----------KEDILKLMEIKMGRILKFNSDKAEELIARMKAD 459

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           I E+    +   +       +  + +           E      + +++    + K +  
Sbjct: 460 IEEIDHHLANIVEY---TVDWYLMLKNKYGKNFPRRTELRNFDTIEASKVVEANEKLYIN 516

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                        +   +  + D +++   DG+    P  +     G       +   N 
Sbjct: 517 REEGFIGTGLKKDEFLSNCSSLDDVIIFFRDGRYLVTPVSD-KKFVGKNILYANVFKKND 575

Query: 599 NQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF---LKVSSEEKMKLV 653
            + I              +   +  +     E ++   T   +        + E ++  V
Sbjct: 576 KRTIYNVVYRDGKEGTHYIKRFAVTSIIRDREYDVTQGTPDSRIMYFTANPNGEAEVIKV 635

Query: 654 VKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYK 693
                  V       + +IF  D   I    R  +G  L    
Sbjct: 636 TLKPNPRV-------RRIIFEEDFSAIGIKGRQARGNILTKLP 671


>gi|145286586|gb|ABP52100.1| topoisomerase IV subunit ParC [Streptococcus pyogenes]
          Length = 147

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 69/147 (46%), Positives = 106/147 (72%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
             I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+Y
Sbjct: 1   YIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F 
Sbjct: 61  DAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFA 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             +++ + EP V P+ FPNLL NG+SG
Sbjct: 121 WNFDDTEKEPTVLPAAFPNLLVNGSSG 147


>gi|330837756|ref|YP_004412397.1| DNA topoisomerase IV subunit A [Spirochaeta coccoides DSM 17374]
 gi|329749659|gb|AEC03015.1| DNA topoisomerase IV subunit A [Spirochaeta coccoides DSM 17374]
          Length = 667

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 123/501 (24%), Positives = 211/501 (42%), Gaps = 45/501 (8%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
                  YL YA   IKERAIPD+ DG KPV RRIIH + EM       F K A +VG  
Sbjct: 5   ETIYRHNYLEYASYVIKERAIPDVVDGLKPVQRRIIHTLFEM---DDGKFHKVANVVGHS 61

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAE 141
           + + HPHGD S+Y++LV +A  F      I  QGNFGN + GD AAA RY E R+   A+
Sbjct: 62  M-RYHPHGDASIYEALVNMA-NFDL---FIERQGNFGNALTGDRAAAGRYIECRIFPFAK 116

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L   + +  ++ D+Y+  + EPV FP+K P +L  G  GIAVGM+T +  HN  E+ +
Sbjct: 117 RVLY--NPELTEYVDSYDGRNREPVAFPAKIPVVLIQGAEGIAVGMSTKMLPHNAIEVLD 174

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A  +++            +++ PD PTG         I++    G G   +  R  ++  
Sbjct: 175 AMKSVLKG--------ESFMLFPDLPTG--------GILDVQEYGDGTGSISVRAKLDTS 218

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
                 IV+TE+PY V    +IE I       R+ +       S +    +     R   
Sbjct: 219 DP--KRIVITELPYGVTSEAMIESIEAAARKGRLKVAAINDYTSDKAN--IEVCLARGTY 274

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
              + ++++  +  E +  +   ++    +P++MP+  I++  +    +VL         
Sbjct: 275 SKDIEDALYAHTSCEQKISV-NALVIKDNMPEIMPVSAIVRFHVRQLLDVLKAELELEKG 333

Query: 382 AIDRRVEILKG----------LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            +   +                 I      + +                  L  + V+ +
Sbjct: 334 HLFDTLHARTLERIFVEERIYKRIEQKRSADAVEAAVVSGFEPYGSELIRPLVHDDVERL 393

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L + +R +   +  + ++E++N+  + + I+  L       +     + E+K +      
Sbjct: 394 LKIPIRRISLFDIEKNRAEIENIHEKLKDIEWKL---SHLTDYALGYLDELKTLLGVKEH 450

Query: 492 LGRRRTTFCEVSRADKATLQQ 512
             R      E+  A     + 
Sbjct: 451 ARRSSIKQFELVDAKSVAQRD 471


>gi|117654289|gb|ABK55575.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  270 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 160/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGXGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV  ++LIEKIA+L+  K+I  + D+RDES      ++ 
Sbjct: 180 TELPYQVNNAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|33338050|gb|AAQ13647.1|AF173980_1 topoisomerase IV [Pasteurella multocida]
          Length = 144

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/144 (52%), Positives = 106/144 (73%), Gaps = 1/144 (0%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  
Sbjct: 1   DGLKPVQRRIIYAMSELGLNAAAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSY 60

Query: 108 RYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           RYPL+ GQGN+G  D   S AA RYTE+R+ ++A+++L  + +  VD++  ++    EP 
Sbjct: 61  RYPLVDGQGNWGAPDDPKSFAAMRYTESRLAKIADILLSELGQGTVDYQPNFDGTLEEPQ 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATS 190
             P++ P++L NGT+GIAVGMAT 
Sbjct: 121 YLPARLPHILLNGTTGIAVGMATK 144


>gi|167861148|gb|ACA05277.1| gyrase subunit A [Klebsiella pneumoniae]
 gi|167861150|gb|ACA05278.1| gyrase subunit A [Klebsiella pneumoniae]
 gi|167861152|gb|ACA05279.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/148 (56%), Positives = 113/148 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G+SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|297242243|gb|ADI24794.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/182 (48%), Positives = 129/182 (70%), Gaps = 1/182 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG 
Sbjct: 121 IPPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 251 RV 252
            V
Sbjct: 181 TV 182


>gi|117950173|gb|ABK58470.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 148

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/145 (55%), Positives = 113/145 (77%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLL 120

Query: 177 ANGTSGIAVGMATSIPSHNVQEICE 201
            NG+SGIAVGMAT+IP HN+ E+  
Sbjct: 121 VNGSSGIAVGMATNIPPHNLTEVIN 145


>gi|146300230|ref|YP_001194821.1| DNA topoisomerase IV subunit A [Flavobacterium johnsoniae UW101]
 gi|146154648|gb|ABQ05502.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacterium johnsoniae
           UW101]
          Length = 906

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 152/732 (20%), Positives = 283/732 (38%), Gaps = 117/732 (15%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            N     E+ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+  
Sbjct: 49  ENQEEEGEDVITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKEL-- 104

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDS 125
                + K A +VG  + + HPHGD S+ D++V++ Q    +  LI  QGN+GNI  GD 
Sbjct: 105 -DDGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----KDLLIDCQGNWGNILTGDG 158

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RY EAR+++ A  +L        ++  +Y+   +EP+  P KFP LLA G  GIAV
Sbjct: 159 AAAPRYIEARLSKFALEVLY--SPKITEWGLSYDGRKAEPINLPVKFPMLLAQGAEGIAV 216

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G++T +  HN  E+ +A++ ++            + + PDF T GI   S      +Y  
Sbjct: 217 GLSTKVLPHNFNELIDASIKILKGK--------PFTLYPDFMTQGIADVS------NYND 262

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G  G RVR R  + ++ + +  +V+T+IP+    S LI+ I +    K    ++ I D +
Sbjct: 263 GMRGGRVRVRAKISQLDKNT--LVITQIPFSTNTSSLIDSILKA-NDKGKIKIKKIEDNT 319

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           A DV I+       + PD  ++++F  +  ET       V+   + P  + +  +LK   
Sbjct: 320 AADVEIL-IHLFPGVSPDKTIDALFAFTACETSVAPLGCVIEDNK-PLFIGVSQMLKIST 377

Query: 366 AHRREVLFRRSSFRMQAIDRRVEI--------LKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
               ++L +    +++ +  +            + + I +    +  ++ +         
Sbjct: 378 HRTVDLLRQELEIQLEELKNKWHFSTLEKIFIREEMYIDFKLYGDRESLYKYLYDRFEPF 437

Query: 418 VSRF--SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
              F   + ++ +  +  + +  + + +  +    +  L  E   +  + ++ +   +  
Sbjct: 438 KKSFVREINDDDLQRLTQIPMIRITRFDSDKADDLIAKLEDE---MKEVEHNLEHLTDFA 494

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
                ++KE + K  +       F  V           +        V ++         
Sbjct: 495 IAYFTKLKEKYGKGRERQTELRVFDNVEATKVVLRNTKLYVNREEGFVGTSLKKDE---- 550

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                                    D +++   DG                         
Sbjct: 551 -----------------YVGDCSDIDDVIVFLRDGTLMITKVDAKTFIGK---------- 583

Query: 596 LNHNQDIVTAFVYDSTCK---LLVVSSKG-----NAFIVEESEII-------ANTRKGKT 640
                DI+   V+D   K     ++   G            + +         N   G  
Sbjct: 584 -----DIIHVAVFDKNDKRTIYNMMYRDGKSGPSYIKRFNVTGVTRDKAYDLTNGTNGSQ 638

Query: 641 FL----KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRG-KG------- 686
            +      + E ++  ++         VG  +K L F ID  ++    RG KG       
Sbjct: 639 VVYFSHNPNGEAEVVTILLRQ------VGTIKK-LKFDIDFAKLAIKGRGSKGNLVTKYP 691

Query: 687 VRLQSYKDGGIS 698
           ++    K+ GIS
Sbjct: 692 IKKIELKEKGIS 703


>gi|332883978|gb|EGK04258.1| hypothetical protein HMPREF9456_01286 [Dysgonomonas mossii DSM
           22836]
          Length = 910

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 129/609 (21%), Positives = 253/609 (41%), Gaps = 80/609 (13%)

Query: 4   DNISNSNTLVEENVKA----------VSLRFAL----------EERYLAYALSTIKERAI 43
           +N+ N   ++++ ++           V ++             +  +L YA   I ERA+
Sbjct: 11  ENLDNDEPILDDELENADAASHSDYKVPIKDTADNQTHLSGMFQNWFLDYASYVILERAV 70

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DGFKPV RRI+H+M  M       + K A I+G  + + HPHGD S+ D+LV+L Q
Sbjct: 71  PHISDGFKPVQRRIMHSMKRM---DDGRYNKVANIIGHTM-QFHPHGDASIGDALVQLGQ 126

Query: 104 PFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
               +  L+  QGN+GN+  GD AAA RY EAR+++ A  ++   +    +++ +Y+  +
Sbjct: 127 ----KDLLVDCQGNWGNVFTGDGAAAPRYIEARLSKFALEVI--FNPKTTEWKPSYDGRN 180

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EP+  P KFP LLA G  GIAVG+++ I  HN  ++C+AA+A +   +        +  
Sbjct: 181 KEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNFNDLCDAAIAHLQGEK--------FAF 232

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
            PDF TGG I  S+      Y  G  G  V+ R  +      +  +V+++IPY    S +
Sbjct: 233 YPDFQTGGYIDVSK------YNDGERGGSVKVRAKIS--KLDNKTLVISDIPYGRTSSSV 284

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           +E I +    K    +  + D +A++V I        +  D  +++++  +D E     N
Sbjct: 285 VESILKA-NDKGKIKIRKVDDITAQNVEIQ-VHLAAGVSSDKTIDALYAFTDCEISISPN 342

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG------LLIA 396
             V+   + P  + +  IL+    +   +L +    +   ++  +             I 
Sbjct: 343 CCVIEDNK-PYFLTVSDILRHTTDNTLSLLRQELEIQKSELEESLHFSSLEKIFIEERIY 401

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                E    +    +     +++++   + E   + IL L    + ++ ++      + 
Sbjct: 402 KDKEFENADNMDIAVEHIDKRLAKYAKQFIREVTREDILKLMEIKMGRILKFNSDKADEL 461

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +   K++I+ + ++ +   +        +KE + K         +F  +         + 
Sbjct: 462 IARYKDEIEEIKHNIENIVDYTISWFVMLKEKYGKDFPRKTEIRSFDTIEATKVVEANEK 521

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +        + ++                             +    D I++   DGK  
Sbjct: 522 LYINREEGFIGTSLKKDE---------------------FVCNCSDIDDIIIFFKDGKYK 560

Query: 574 TLPAGNLLS 582
            +   + + 
Sbjct: 561 IVKVSDKMF 569


>gi|297242221|gb|ADI24783.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242255|gb|ADI24800.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/178 (48%), Positives = 126/178 (70%), Gaps = 1/178 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           IP HN+ EI +AA+ L+DNP+  +  +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLNDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242219|gb|ADI24782.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/178 (48%), Positives = 126/178 (70%), Gaps = 1/178 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           IP HN+ EI +AA+ L+DNP+  +  +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLNDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|167861166|gb|ACA05286.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 113/148 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G+SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 GSSGIAVGMATNIPPHNITEVINGCLAY 148


>gi|117654183|gb|ABK55522.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 110/224 (49%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ    RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYESMVRMAQDLNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H + EI +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           E+++ +L+E I GPDFPT G+I   R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMI-MGRSGIRKAYETGRGSITIRAKAQIEETSSGKQVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K++LIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|259020306|gb|ACV90437.1| DNA gyrase subunit A [Vibrio cholerae O139]
          Length = 151

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/151 (57%), Positives = 115/151 (76%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGI 120

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISI 214
           AVGMAT+IP HN+ E+ +  LA IDN  I+I
Sbjct: 121 AVGMATNIPPHNLGEVIDGCLAYIDNEAITI 151


>gi|309807819|ref|ZP_07701751.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|308168921|gb|EFO71007.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
          Length = 136

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 68/136 (50%), Positives = 100/136 (73%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKSARIVGEV+GK HPHGD S+
Sbjct: 1   MSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYKKSARIVGEVMGKFHPHGDSSI 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+++  +AQ F  RY L+ G GNFG+IDGD  AA RYTEARM+++A  +L+ +++D +D+
Sbjct: 61  YEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTEARMSKIAMEMLRDINKDTIDW 120

Query: 155 RDTYNEEDSEPVVFPS 170
           +  Y++ ++E   F  
Sbjct: 121 QRNYDDNENETSSFTC 136


>gi|126661927|ref|ZP_01732926.1| DNA topoisomerase IV subunit A [Flavobacteria bacterium BAL38]
 gi|126625306|gb|EAZ95995.1| DNA topoisomerase IV subunit A [Flavobacteria bacterium BAL38]
          Length = 902

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 140/647 (21%), Positives = 264/647 (40%), Gaps = 92/647 (14%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +N   E+ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H+M E+   
Sbjct: 42  ENNENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKEL--- 96

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               + K A IVG  + + HPHGD S+ D++V++ Q    +  +I  QGN+GNI  GDSA
Sbjct: 97  DDGRYNKVANIVGHTM-QYHPHGDASIGDAMVQIGQ----KDLIIDMQGNWGNILTGDSA 151

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++    +L        ++  +Y+   +EP+  P KFP LLA G  GIAVG
Sbjct: 152 AASRYIEARISKFGHDVLY--SPKITEWGMSYDGRRAEPINLPVKFPLLLAQGAEGIAVG 209

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           ++T +  HN  E+ ++++ ++            + + PDFPT GI   S      +Y  G
Sbjct: 210 LSTKVLPHNFNELIDSSIKILKGK--------PFTLFPDFPTAGIADVS------NYNDG 255

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G RVR R  + ++ +    +V+T+IP+    S LI+ I +    K    ++ I D +A
Sbjct: 256 LRGGRVRVRAKIGQLDK--QTLVITQIPFSTNTSTLIDSILKA-NEKGKIKIKKIEDNTA 312

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +V I+       + PD ++++++  +  ET     +  +     P  + +  +LK    
Sbjct: 313 AEVEIL-IHLPAGVSPDKMIDALYAFTACETSVAP-LGCVIENNKPLFIGVSDMLKISTN 370

Query: 367 HRREVLFRRSSFRMQAIDRRVEI--------LKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
              ++L R    ++  ++ +            + + I +    +  ++ +         +
Sbjct: 371 RTVDLLKRELEIQLDELENKWHFSTLEKIFIREEMYIDFKLYSDRESLYKYMYDRFEPFL 430

Query: 419 SRF--SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
             F   + ++ +  +  + +  + + +  +    +  L AE E++           + I 
Sbjct: 431 KSFVREINDDDLQKLTQIPMIRITRFDSDKADDAIAKLEAEMEQVKYH-------LDHII 483

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
               +  +        GR R T                 E      + + +  +R+ K +
Sbjct: 484 DYTIDFFQKLKDKYGKGRERQT-----------------ELRSFDNIEATKVVLRNTKLY 526

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
                          +        D +++   DGK       +                 
Sbjct: 527 VNREEGFFGTGLKKDEYVADCSDIDDVIVFLRDGKMMVAKVDDKKF-------------- 572

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              +DI+   V+D                   + +  + + G TF+K
Sbjct: 573 -VGKDIIHIAVFDKND-----------KRTIYNMMYRDGKNGSTFIK 607


>gi|281356735|ref|ZP_06243226.1| DNA topoisomerase (ATP-hydrolyzing) [Victivallis vadensis ATCC
           BAA-548]
 gi|281316862|gb|EFB00885.1| DNA topoisomerase (ATP-hydrolyzing) [Victivallis vadensis ATCC
           BAA-548]
          Length = 877

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 137/526 (26%), Positives = 225/526 (42%), Gaps = 54/526 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  +L YA   IK+RAIPD+ DG KPV RR++ A+ +    +     K A +VG  +  
Sbjct: 52  MDRNFLEYASYVIKDRAIPDVDDGLKPVQRRVLWALYQ---VYDGRTHKVANVVGNTM-H 107

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELIL 144
            HPHG+ S+ D+LV LA     +   I+ QGNFGNI  G  AAA RY E  ++ +   +L
Sbjct: 108 YHPHGNASIEDALVVLA----NKEYYITRQGNFGNILTGSPAAAGRYIECSLSPLGHEVL 163

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D  +F DTY+    EPV  P+K P+LL  G+ GIAVGMAT I  HN  E+ EA +
Sbjct: 164 --FNNDITEFVDTYDGRGVEPVTLPAKVPSLLMLGSDGIAVGMATKIMPHNFNELLEAEI 221

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A++   E  +         PDF  G         + E Y  G G   +RA+  +      
Sbjct: 222 AVLRGEEFELY--------PDFQQG-----GLMDVRE-YNDGNGKITLRAKIEIV----- 262

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              +++ EIP       L+  I +     +I  +  + D + + V I + P  R  DP+ 
Sbjct: 263 GRDLIIREIPATTSTETLVASIEKAAEKNKIK-ISSVNDYTTDKVEIKVVP-TRGYDPEK 320

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
            M+ ++M +D      +    +     P  M +  +L+       E L R     +   +
Sbjct: 321 TMQGLYMYTDCSVSISV-NMTVIRENRPVQMSVSEVLRRNADKLLEYLKRELEIDLAKQE 379

Query: 385 RRVEILKGLLIAYLN--IDEIIAIIRNEDKPKP--------VMVSRFSLTENQVDAILNL 434
                     I + N    +I      +++             + R  +T+  +D +L L
Sbjct: 380 DLFHAKTLAQIFFENRIYKKIEECKSEKEEYTEVHAGLAPFRHLLRRDVTDQDIDKLLAL 439

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
            +R + + +  + + EL  +LA+ E+I   L S K+        +R++ + + K      
Sbjct: 440 PVRRISRFDIEKNQRELAEVLAKMEEIKKNLGSLKK---YAINYLRKLLDKYGKDFP--- 493

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           RRT            + +       I V    +         S D+
Sbjct: 494 RRTEI-----EHFEKIDRREAALNNIKVGWDRKNGYVGTSIKSDDI 534


>gi|89101302|ref|ZP_01174113.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
 gi|89083983|gb|EAR63173.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
          Length = 610

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 122/558 (21%), Positives = 256/558 (45%), Gaps = 24/558 (4%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           + ++++L+E I GPDFPTGG I    E I ++Y  G+G   +R +  VE++  G   IV+
Sbjct: 1   DCTVDELMEVIKGPDFPTGGTIQ-GAEGIKKAYETGKGKIIIRGKSEVEDIRGGRQQIVI 59

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           TEIP++V K+ L++KI EL + +++  + ++RDE+      ++    +  D   ++  ++
Sbjct: 60  TEIPFEVNKANLVKKIDELKMDRKVEGISEVRDETDRTGLRIVIELKKDADAAGVLNYLY 119

Query: 331 MLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
             +D++  +     V    R P+++ L  +L  ++ H++EV+ RRS + ++    R  I+
Sbjct: 120 KNTDLQIPYNF-NMVAISNRHPKLLGLREMLDAYIGHQKEVVTRRSQYELKKAQDRQHIV 178

Query: 391 KGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQI 447
           +GL+ A   +DE+IA IR     +    +   +F  TE Q +AI++L+L  L   +   +
Sbjct: 179 EGLMKALSILDEVIAAIRASKDKRDAKDNLISQFGFTEPQAEAIVSLQLYRLTNTDITAL 238

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
           ++E + L  +  ++ S+L S K+  + I  ++++VK+ F+ +      R +  E    + 
Sbjct: 239 RAEAEELAQKVAELLSILQSEKKLLSVIKKDLKDVKKRFADA------RRSVIEAEIEEI 292

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSLKIALHAHTTDRIL 564
               + +I  E + V ++N G+++     S    +      K+ D L   L  +TTD +L
Sbjct: 293 KINLEVLIASEDVIVTVTNEGYVKRTSQRSFAASNGQDFGMKDSDRLMSKLDMNTTDVLL 352

Query: 565 LLSTDGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
           + +  G    LP   L   R     + +  L+ ++  + I+ A     +++   L+ ++ 
Sbjct: 353 VFTDKGSYMYLPVHELPDIRWKDLGQHVANLVPIDRTESIIGAIPVKDFEAEAYLMFITK 412

Query: 620 KGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
            G     E     A    K    + + +++ +  V    G   + +       L F  ++
Sbjct: 413 NGMVKKSELKNYKAQRYSKPLVAVNLKNDDVVTDVFLTDGKQDLMLATSMGYALWFPEEE 472

Query: 678 IPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +  +  R  GV+  + KDG  +         +    + +  R   +           R  
Sbjct: 473 VSVVGARAAGVKGINLKDGDYVVSGKLVSNVKEEAVVIATQRGAIKKMKLAEFERTSRAK 532

Query: 736 VGSLVPKGFPRS-GKFLS 752
            G ++ +    +  + + 
Sbjct: 533 RGLVMLRELKANPHRVVG 550


>gi|297242227|gb|ADI24786.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242253|gb|ADI24799.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242267|gb|ADI24806.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242289|gb|ADI24817.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/182 (47%), Positives = 129/182 (70%), Gaps = 1/182 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG 
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 251 RV 252
            V
Sbjct: 181 TV 182


>gi|254729442|gb|ACT79805.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 132

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/126 (57%), Positives = 98/126 (77%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKS
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 136 MTQVAE 141
           + ++A 
Sbjct: 127 LAKIAH 132


>gi|29348988|ref|NP_812491.1| DNA topoisomerase IV subunit A [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29340895|gb|AAO78685.1| topoisomerase IV subunit A [Bacteroides thetaiotaomicron VPI-5482]
          Length = 850

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 144/677 (21%), Positives = 256/677 (37%), Gaps = 60/677 (8%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG  + + 
Sbjct: 3   QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRL---DDGRYNKVANIVGHTM-QF 58

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A  I+ 
Sbjct: 59  HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALDIV- 113

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++
Sbjct: 114 -FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIS 172

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +      +         PDF TGG I  ++      Y  G  G  V+ R  + ++   +
Sbjct: 173 YLHGESFQLY--------PDFQTGGSIDVAK------YNDGERGGAVKVRAKINKLDNKT 218

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I  TEIPY    S +I+ I + +   +I  +  + D +A +V I+          D  
Sbjct: 219 LAI--TEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEIL-VHLAPGTSSDKT 274

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +D E     N  V+   + P  + +  +LK+   +   +L +    +   I  
Sbjct: 275 IDALYAFTDCEVSISPNCCVIDDSK-PHFLTVSKVLKKSADNTLGLLKQELEIKKGEILE 333

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            +       I                            LT      I  +          
Sbjct: 334 SLHFASLEKIFIEERIYKDKEFEQSKDMDAACAHIDDRLTPFYPSFIREVT--------- 384

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +        +     +    +   +   ++  EI E+ +  +   D       + ++ +
Sbjct: 385 -KEDILKLMEIKMGRILKFNTDKADELIARMKEEIAEIDDHLAHIVDY---TVNWYQMLK 440

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
           +          E      + + +    + K +               +   +    D ++
Sbjct: 441 SKYGKNFPRRTELRNFDTIEAAKVVEANEKLYINRDEGFIGTALKKDEFVANCSDIDDVI 500

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI--VTAFVYDSTCKLLVVSSKGN 622
           +   DGK    P  +     G       +   N  + I  +T          +   +   
Sbjct: 501 VFFRDGKYIVTPVAD-KKFVGKNILYVNVFKKNDKRTIYNITYRDGKEGTTYIKRFAVTG 559

Query: 623 AFIVEESEIIANTRKGKT---FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF--SIDQ 677
                E ++   T   +        + E ++  V       V       + +IF     +
Sbjct: 560 VVRDREYDVTQGTPDSRITYFSANPNGEAEIIKVTLKPNPRV-------RRIIFERDFSE 612

Query: 678 IPEMSR-GKGVRLQSYK 693
           I    R  +GV L    
Sbjct: 613 ISIKGRQAQGVILTRLP 629


>gi|44485|emb|CAA37623.1| gyrase A subunit [Mycoplasma pneumoniae]
          Length = 156

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/144 (50%), Positives = 100/144 (69%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             L +  +K +SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++     G+   
Sbjct: 13  QELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHD 72

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F  RY LI G GNFG+IDGD  AA 
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 130 RYTEARMTQVAELILQGVDEDAVD 153
           RYTEAR++++A  +L+ +D+D VD
Sbjct: 133 RYTEARLSKLAGELLRDIDKDTVD 156


>gi|297242265|gb|ADI24805.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/182 (47%), Positives = 127/182 (69%), Gaps = 1/182 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG   
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVI 180

Query: 252 VR 253
           V 
Sbjct: 181 VC 182


>gi|167946605|ref|ZP_02533679.1| DNA gyrase, subunit A, type II topoisomerase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 136

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/129 (55%), Positives = 98/129 (75%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +   + V  V+L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+  
Sbjct: 2   SEFAKEVLPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMR 121

Query: 131 YTEARMTQV 139
           YTE RM ++
Sbjct: 122 YTEVRMAKI 130


>gi|11863181|gb|AAD43483.2| DNA gyrase subunit A [Staphylococcus epidermidis]
          Length = 126

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/125 (55%), Positives = 95/125 (76%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKS
Sbjct: 1   RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEAR
Sbjct: 61  ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 120

Query: 136 MTQVA 140
           MT++ 
Sbjct: 121 MTKIT 125


>gi|313887294|ref|ZP_07820985.1| DNA gyrase/topoisomerase IV, A subunit [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299284|ref|YP_004441205.1| DNA topoisomerase (ATP-hydrolyzing) [Porphyromonas asaccharolytica
           DSM 20707]
 gi|312923213|gb|EFR34031.1| DNA gyrase/topoisomerase IV, A subunit [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176347|gb|AEE12037.1| DNA topoisomerase (ATP-hydrolyzing) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 875

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 154/694 (22%), Positives = 266/694 (38%), Gaps = 82/694 (11%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
              +L YA   I ERA+P + DG KPV RR+++ M    L       K A+IVG  +   
Sbjct: 56  RHWFLDYASYVILERAVPHIEDGLKPVQRRVLYTMH---LMENGTLHKVAKIVGATMA-Y 111

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q     Y LI  QGN+GNI  GD AAA RY EA+++  A  IL 
Sbjct: 112 HPHGDASINDALVQLGQK---GY-LIDTQGNWGNILTGDEAAAGRYIEAKLSNFALEIL- 166

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
              +    +  +Y+ +  EPV  P++FP LLA G  GIAVG++  I  HN +E+ EAA A
Sbjct: 167 -FGDKITPWMKSYDGKSREPVYLPARFPLLLAQGAEGIAVGLSCKILPHNPKELIEAACA 225

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +            + + PDFPTGGII   R      Y  G+ G +V++R  +E      
Sbjct: 226 YLRG--------EPFTLYPDFPTGGIIDVDR------YNDGKRGGQVKSRARIE--RIED 269

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
             + V ++P+    S LI+ I +       +I  ++D+  E+A+    +       +  D
Sbjct: 270 RVLSVRDLPFGKTTSTLIDSILKANDKGLIKIKRIDDMTAETAD----IRIYLPVGVSAD 325

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
             ++ ++  +D E     N  V+   + P+ + +  +L+  + H RE+L          +
Sbjct: 326 KTIDGLYAFTDCEVSISPNACVIEDDK-PRFLGVSDLLRHSVKHTRELLQE---DLRLQL 381

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R E   G  +  L I+  I  +R  ++      +   + +     + +  LR +   +
Sbjct: 382 HDRQEEYMGASLERLFIEHRIYKLRPFEEAPDQQTALDVIRKALEPIVGDSLLRPITDDD 441

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR--RTTFCE 501
             ++       +     +   L   +Q   ++  E+ +++      TD       +   E
Sbjct: 442 LARLL-----EIKMARILKFNLEKNEQLILRLTEEMAQIQHHLDHITDYTIHYYSSLLEE 496

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
                     +   +      + + +    +LK +               +        D
Sbjct: 497 YGAGW-----ERRTQIGHFGTIEATKVVEENLKLYIDRKMGFAGTGIKGGEYVCDCSEID 551

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +++   DG                             + I  A   D        +   
Sbjct: 552 DMIVFFRDGTYLITKIEEKKFLGKERVLHINKYVRGDKRTIYNAIYLDGK------TKTS 605

Query: 622 NAFIVEESEIIANT-------RKGKTFL----KVSSEEKMKLVVKVTGDHVAVVGENRKL 670
                  S  I +          G   L      + E +  +V  + G        +R++
Sbjct: 606 FIKRFHVSASIRDRGYNLTMGTPGSKVLYFSANPNGEAESVMVKLLRG------ATSRRI 659

Query: 671 LIFSID--QIPEMSR-GKGVRL-------QSYKD 694
           L+F  D   I    R  KG  +        + K+
Sbjct: 660 LVFEKDFADIAIKGRSAKGNIVTRAPIERITLKE 693


>gi|212690851|ref|ZP_03298979.1| hypothetical protein BACDOR_00339 [Bacteroides dorei DSM 17855]
 gi|237712658|ref|ZP_04543139.1| topoisomerase IV subunit A [Bacteroides sp. 9_1_42FAA]
 gi|212666580|gb|EEB27152.1| hypothetical protein BACDOR_00339 [Bacteroides dorei DSM 17855]
 gi|229453979|gb|EEO59700.1| topoisomerase IV subunit A [Bacteroides sp. 9_1_42FAA]
          Length = 897

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 132/617 (21%), Positives = 242/617 (39%), Gaps = 53/617 (8%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRL---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVV--FNPKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++A +   E  +         PDF TGG I  SR      Y  G  G  V+ R  + +
Sbjct: 210 DASIAYLRGEEFKLY--------PDFQTGGSIDVSR------YNDGERGGMVKVRAKINK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +   +  I   E+P+      + + I +     +I  +  + D ++E V I+       +
Sbjct: 256 IDNKTLSI--AEVPFGKTVPGVCDSIVKASEKGKIK-IRKVEDLTSEKVEIL-VHLAPGV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E         +   + P  + +  +LK+   +   +L +      
Sbjct: 312 SSDKTLDALYAFTDCEVSISP-NCCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHK 370

Query: 381 QAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +   +    L+ + I      E+    ++E+           LT      I  +    
Sbjct: 371 GELLENLHFASLEKIFIEERIYKEV-KFEQSENTDAACEFIDERLTPFYSQFIREVTKED 429

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           + KL + +              +    +   +   +I  +I E+    +   +       
Sbjct: 430 ILKLLDIK----------MARILKFNKDKADENIARIKEQIEEINNHLAHIVEY---TID 476

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
           + ++ +           E      + + +    + K +               +   +  
Sbjct: 477 WYQMLKDKYGKQYPRRTELRNFDTIEAAKVVEANEKLYINREEGFIGTTLKKDEFIANCS 536

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             D +++   DGK   +   +     G       +   N  + I    VY    +     
Sbjct: 537 DIDDVIIFYKDGKYKVVRVTD-KMFVGKNVLYVNIFKKNDKRTIYNV-VYRDGKEGF--- 591

Query: 619 SKGNAFIVEESEIIANT 635
                     + I  + 
Sbjct: 592 --HYIKRFNITSITRDR 606


>gi|237723599|ref|ZP_04554080.1| topoisomerase IV subunit A [Bacteroides sp. D4]
 gi|229438052|gb|EEO48129.1| topoisomerase IV subunit A [Bacteroides dorei 5_1_36/D4]
          Length = 897

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 132/617 (21%), Positives = 242/617 (39%), Gaps = 53/617 (8%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRL---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVV--FNPKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++A +   E  +         PDF TGG I  SR      Y  G  G  V+ R  + +
Sbjct: 210 DASIAYLRGEEFKLY--------PDFQTGGSIDVSR------YNDGERGGMVKVRAKINK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +   +  I   E+P+      + + I +     +I  +  + D ++E V I+       +
Sbjct: 256 IDNKTLSI--AEVPFGKTVPGVCDSIVKASEKGKIK-IRKVEDLTSEKVEIL-VHLAPGV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E         +   + P  + +  +LK+   +   +L +      
Sbjct: 312 SSDKTLDALYAFTDCEVSISP-NCCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHK 370

Query: 381 QAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +   +    L+ + I      E+    ++E+           LT      I  +    
Sbjct: 371 GELLENLHFASLEKIFIEERIYKEV-KFEQSENTDAACEFIDERLTPFYSQFIREVTKED 429

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           + KL + +              +    +   +   +I  +I E+    +   +       
Sbjct: 430 ILKLLDIK----------MARILKFNKDKADENIARIKEQIEEINNHLAHIVEY---TID 476

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
           + ++ +           E      + + +    + K +               +   +  
Sbjct: 477 WYQMLKDKYGKQYPRRTELRNFDTIEAAKVVEANEKLYINREEGFIGTTLKKDEFIANCS 536

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             D +++   DGK   +   +     G       +   N  + I    VY    +     
Sbjct: 537 DIDDVIIFYKDGKYKVVRVTD-KMFVGKNVLYVNIFKKNDKRTIYNV-VYRDGKEGF--- 591

Query: 619 SKGNAFIVEESEIIANT 635
                     + I  + 
Sbjct: 592 --HYIKRFNITSITRDR 606


>gi|3411074|gb|AAC31135.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411076|gb|AAC31136.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411078|gb|AAC31137.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 133

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/130 (53%), Positives = 98/130 (75%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVA 140
           YTEARMT++ 
Sbjct: 123 YTEARMTKIT 132


>gi|297242299|gb|ADI24822.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDILEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|265752343|ref|ZP_06088136.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_33FAA]
 gi|263237135|gb|EEZ22605.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_33FAA]
          Length = 897

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 132/617 (21%), Positives = 242/617 (39%), Gaps = 53/617 (8%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRL---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVV--FNPKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++A +   E  +         PDF TGG I  SR      Y  G  G  V+ R  + +
Sbjct: 210 DASIAYLRGEEFKLY--------PDFQTGGSIDVSR------YNDGERGGMVKVRAKINK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +   +  I   E+P+      + + I +     +I  +  + D ++E V I+       +
Sbjct: 256 IDNKTLSI--AEVPFGKTVPGVCDSIVKASEKGKIK-IRKVEDLTSEKVEIL-VHLAPGV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E         +   + P  + +  +LK+   +   +L +      
Sbjct: 312 SSDKTLDALYAFTDCEVSISP-NCCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHK 370

Query: 381 QAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +   +    L+ + I      E+    ++E+           LT      I  +    
Sbjct: 371 GELLENLHFASLEKIFIEERIYKEV-KFEQSENTDAACEFIDERLTPFYSQFIREVTKED 429

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           + KL + +              +    +   +   +I  +I E+    +   +       
Sbjct: 430 ILKLLDIK----------MARILKFNKDKADENIARIKEQIEEINNHLAHIVEY---TID 476

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
           + ++ +           E      + + +    + K +               +   +  
Sbjct: 477 WYQMLKDKYGKQYPRRTELRNFDTIEAAKVVEANEKLYINREEGFIGTTLKKDEFIANCS 536

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             D +++   DGK   +   +     G       +   N  + I    VY    +     
Sbjct: 537 DIDDVIIFYKDGKYKVVRVTD-KMFVGKNVLYVNIFKKNDKRTIYNV-VYRDGKEGF--- 591

Query: 619 SKGNAFIVEESEIIANT 635
                     + I  + 
Sbjct: 592 --HYIKRFNITSITRDR 606


>gi|332297527|ref|YP_004439449.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema brennaborense DSM
           12168]
 gi|332180630|gb|AEE16318.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema brennaborense DSM
           12168]
          Length = 648

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 149/696 (21%), Positives = 266/696 (38%), Gaps = 103/696 (14%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           ++   ++ +L YA   I++RAIPD+ DG KPV RRI+H + E        F K A +VG+
Sbjct: 4   VKNLFDKNFLEYASYVIRDRAIPDIEDGLKPVQRRILHTLFE---VDDGKFNKVANVVGQ 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + K HPHGD S+  +LV LA     +   I  QGNFGN+  GD A+A RY E R+  +A
Sbjct: 61  CM-KYHPHGDASIGGALVVLA----NKELFIEKQGNFGNLYTGDGASAARYIECRLKPLA 115

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L   +     +  +Y+  + EPVVF +K P  L  G  GIAVGM+T+I SHNV+E+ 
Sbjct: 116 RDVLY--NPAITQYVPSYDGRNKEPVVFRAKLPIALILGAEGIAVGMSTNILSHNVREVI 173

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A +A +   +        + + PD  TGG+I  S       Y+ G G    RA+    +
Sbjct: 174 QAEIACLKGEK--------FALYPDCFTGGLIDVSD------YQDGLGKITTRAKLDTSD 219

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  IVV E+P+     RL E I +     ++ +   + D +A+ V I      R +
Sbjct: 220 PK----RIVVRELPFGSNSERLTESIVKAAKNGKLKVAS-VTDYTADKVEIE-IKLQRGV 273

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             + ++ +++  ++ E     N+ V+    +PQVM +  +++        VL        
Sbjct: 274 YAEDVVSALYAFTECEQSISCNLLVIRD-NMPQVMTVSDVIRYHAEKLVAVLKDELELER 332

Query: 381 QAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------FSLTENQVDA 430
             +  ++ +   + + I       I  +       K V+            +++E+ V  
Sbjct: 333 AQLIDKLHLRTLERIFIEERIYKRIEEMKTEAAVSKAVVTGFEPFRAELIRAVSEDDVAH 392

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L + +R +   +  + + E+                       I   ++E++++    T
Sbjct: 393 LLKIPIRRISLYDINKNRQEVQA---------------------INKRLKEIEKLLKNLT 431

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                  ++ E + A       A   +      +  +  ++       D SA +     S
Sbjct: 432 AYA---VSWLEGTLAKLDVETTARRTQIKKFSAVDVKEVVKRDIPLRYDASAGYLGTAVS 488

Query: 551 L-KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
                      DR+L +   G        + L          L      ++ + T    D
Sbjct: 489 AGTEWFKVTPYDRVLFIRKSGIYTVCDVPDKLFVDTGMWYCGLADKEELSKVLFTVIYRD 548

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG----------- 658
                   ++          + I   R            ++  V  V             
Sbjct: 549 PK------TNYAYIKRCRIEQFI-LNRDYLIA---PDGAEVLHVGTVKDFKFKLHYVKKP 598

Query: 659 -----DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL 689
                + +   G       F    +    + +GVRL
Sbjct: 599 RVKITEEIFSAGS------FDEKGL----KAQGVRL 624


>gi|297242305|gb|ADI24825.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242271|gb|ADI24808.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242293|gb|ADI24819.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242269|gb|ADI24807.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242225|gb|ADI24785.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242231|gb|ADI24788.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242235|gb|ADI24790.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242237|gb|ADI24791.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242259|gb|ADI24802.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242261|gb|ADI24803.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|194293785|gb|ACF39987.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293791|gb|ACF39990.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293797|gb|ACF39993.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293801|gb|ACF39995.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293815|gb|ACF40002.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 128/296 (43%), Positives = 195/296 (65%), Gaps = 3/296 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L     PQV+ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQVLN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 293


>gi|150024744|ref|YP_001295570.1| DNA topoisomerase IV subunit A [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771285|emb|CAL42754.1| Topoisomerase IV subunit A [Flavobacterium psychrophilum JIP02/86]
          Length = 906

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 144/647 (22%), Positives = 270/647 (41%), Gaps = 92/647 (14%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    E+ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKEL--- 104

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               + K A +VG  + + HPHGD S+ D++V++ Q    R  LI  QGN+GNI  GDSA
Sbjct: 105 DDGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++ A  +L        D+  +Y+   +EP   P KFP LLA+G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVLY--SPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           ++T +  HN  E+ +A++ ++            + I PDF T GI   S      +Y  G
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGK--------PFTIYPDFQTAGIADVS------NYNDG 263

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G RVR R  + ++ +    +V+T+IP+    S LI+ I +    K    ++ I D +A
Sbjct: 264 LRGGRVRVRAKISQLDK--QTLVITQIPFSTNTSTLIDSILKA-NEKGKIKIKKIEDNTA 320

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +V I+       + PD  +++++  +  ET       V+   + P  + +  +LK    
Sbjct: 321 AEVEIL-IHLFPGVSPDKSIDALYAFTACETSVAPLGCVIEDNK-PLFIGVSAMLKISTH 378

Query: 367 HRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKP--------KPV 416
              ++L      ++  ++ +     L+ + I      +I      E+            +
Sbjct: 379 RTVQLLKSELEIQLSELEEQWHFLSLERIFIENKIYRDIEDKTTRENVIKAVDDGLKPHI 438

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              + ++TE  +  +L++R+  + K +  + + ++++L   +  I+ + +  +   +   
Sbjct: 439 KHLKRAVTEEDILRLLDIRIMRISKFDSNKAQDKIESL---EGDIEQVKHDLENLIDFAI 495

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
                +KE + K                      ++   E      + + +  +R+ K +
Sbjct: 496 AYFTRLKEKYGK---------------------GRERQTELRSFDTIEATKVVLRNTKLY 534

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
                          +        D +++   DG+       +                 
Sbjct: 535 VNKEEGFFGTGLKKDEYVADCSDIDDVIVFLRDGRLMISKVDDKKFVGK----------- 583

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               DI+   V+D                   + I  + + G +F+K
Sbjct: 584 ----DIIHIAVFDKND-----------KRTIYNMIYRDGKNGSSFIK 615


>gi|254882315|ref|ZP_05255025.1| topoisomerase IV subunit A [Bacteroides sp. 4_3_47FAA]
 gi|319643075|ref|ZP_07997706.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_40A]
 gi|254835108|gb|EET15417.1| topoisomerase IV subunit A [Bacteroides sp. 4_3_47FAA]
 gi|317385243|gb|EFV66191.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_40A]
          Length = 897

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 132/617 (21%), Positives = 242/617 (39%), Gaps = 53/617 (8%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRL---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVV--FNPKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++A +   E  +         PDF TGG I  SR      Y  G  G  V+ R  + +
Sbjct: 210 DASIAYLRGEEFKLY--------PDFQTGGSIDVSR------YNDGERGGMVKVRAKINK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +   +  I   E+P+      + + I +     +I  +  + D ++E V I+       +
Sbjct: 256 IDNKTLSI--AEVPFGKTVPGVCDSIVKASEKGKIK-IRKVEDLTSEKVEIL-VHLAPGV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E         +   + P  + +  +LK+   +   +L +      
Sbjct: 312 SSDKTLDALYAFTDCEVSISP-NCCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHK 370

Query: 381 QAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +   +    L+ + I      E+    ++E+           LT      I  +    
Sbjct: 371 GELLENLHFASLEKIFIEERIYKEV-KFEQSENTDAACEFIDERLTPFYPQFIREVTKED 429

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           + KL + +              +    +   +   +I  +I E+    +   +       
Sbjct: 430 ILKLLDIK----------MARILKFNKDKADENITRIKEQIEEINNHLAHIVEY---TID 476

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
           + ++ +           E      + + +    + K +               +   +  
Sbjct: 477 WYQMLKDKYGKQYPRRTELRNFDTIEAAKVVEANEKLYINREEGFIGTALKKDEFIANCS 536

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             D +++   DGK   +   +     G       +   N  + I    VY    +     
Sbjct: 537 DIDDVIIFYKDGKYKVVRVTD-KMFVGKNVLYVNIFKKNDKRTIYNV-VYRDGKEGF--- 591

Query: 619 SKGNAFIVEESEIIANT 635
                     + I  + 
Sbjct: 592 --HYIKRFNITSITRDR 606


>gi|194293783|gb|ACF39986.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 128/296 (43%), Positives = 195/296 (65%), Gaps = 3/296 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L     PQV+ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQVLN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 293


>gi|298386698|ref|ZP_06996253.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 1_1_14]
 gi|298260372|gb|EFI03241.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 1_1_14]
          Length = 881

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 149/690 (21%), Positives = 262/690 (37%), Gaps = 61/690 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DENVKHQ-LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRL---DDGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  I+   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDIV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +      +         PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGESFQLY--------PDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++   +  I  TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKINKLDNKTLAI--TEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                     D  +++++  +D E     N  V+   + P  + +  +LK+   +   +L
Sbjct: 294 -VHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSK-PHFLTVSKVLKKSADNTLGLL 351

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVDAI 431
            +    +   I   +       I                            LT      I
Sbjct: 352 KQELEIKKGEILESLHFASLEKIFIEERIYKDKEFEQSKDMDAACAHIDDRLTPFYPSFI 411

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
             +           +        +     +    +   +   ++  EI E+ +  +   D
Sbjct: 412 REVT----------KEDILKLMEIKMGRILKFNTDKADELIARMKEEIAEIDDHLAHIVD 461

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                  + ++ ++          E      + + +    + K +               
Sbjct: 462 Y---TVNWYQMLKSKYGKNFPRRTELRNFDTIEAAKVVEANEKLYINRDEGFIGTALKKD 518

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI--VTAFVYD 609
           +   +    D +++   DGK    P  +     G       +   N  + I  +T     
Sbjct: 519 EFVANCSDIDDVIVFFRDGKYIVTPVAD-KKFVGKNILYVNVFKKNDKRTIYNITYRDGK 577

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKT---FLKVSSEEKMKLVVKVTGDHVAVVGE 666
                +   +        E ++   T   +        + E ++  V       V     
Sbjct: 578 EGTTYIKRFAVTGVVRDREYDVTQGTPDSRITYFSANPNGEAEIIKVTLKPNPRV----- 632

Query: 667 NRKLLIF--SIDQIPEMSR-GKGVRLQSYK 693
             + +IF     +I    R  +GV L    
Sbjct: 633 --RRIIFERDFSEISIKGRQAQGVILTRLP 660


>gi|194293771|gb|ACF39980.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293773|gb|ACF39981.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293777|gb|ACF39983.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293779|gb|ACF39984.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293781|gb|ACF39985.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293787|gb|ACF39988.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293793|gb|ACF39991.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293803|gb|ACF39996.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293811|gb|ACF40000.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 127/296 (42%), Positives = 195/296 (65%), Gaps = 3/296 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L     PQ++ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 293


>gi|150002814|ref|YP_001297558.1| DNA topoisomerase IV subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294777257|ref|ZP_06742712.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides vulgatus PC510]
 gi|149931238|gb|ABR37936.1| topoisomerase IV subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294448877|gb|EFG17422.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides vulgatus PC510]
          Length = 897

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 132/617 (21%), Positives = 242/617 (39%), Gaps = 53/617 (8%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRL---DDGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVV--FNPKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++A +   E  +         PDF TGG I  SR      Y  G  G  V+ R  + +
Sbjct: 210 DASIAYLRGEEFKLY--------PDFQTGGSIDVSR------YNDGERGGMVKVRAKINK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +   +  I   E+P+      + + I +     +I  +  + D ++E V I+       +
Sbjct: 256 IDNKTLSI--AEVPFGKTVPGVCDSIVKASEKGKIK-IRKVEDLTSEKVEIL-VHLAPGV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E         +   + P  + +  +LK+   +   +L +      
Sbjct: 312 SSDKTLDALYAFTDCEVSISP-NCCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHK 370

Query: 381 QAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +   +    L+ + I      E+    ++E+           LT      I  +    
Sbjct: 371 GELLENLHFASLEKIFIEERIYKEV-KFEQSENTDAACEFIDERLTPFYPQFIREVTKED 429

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           + KL + +              +    +   +   +I  +I E+    +   +       
Sbjct: 430 ILKLLDIK----------MARILKFNKDKADENIARIKEQIEEINNHLAHIVEY---TID 476

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
           + ++ +           E      + + +    + K +               +   +  
Sbjct: 477 WYQMLKDKYGKQYPRRTELRNFDTIEAAKVVEANEKLYINREEGFIGTALKKDEFIANCS 536

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             D +++   DGK   +   +     G       +   N  + I    VY    +     
Sbjct: 537 DIDDVIIFYKDGKYKVVRVTD-KMFVGKNVLYVNIFKKNDKRTIYNV-VYRDGKEGF--- 591

Query: 619 SKGNAFIVEESEIIANT 635
                     + I  + 
Sbjct: 592 --HYIKRFNITSITRDR 606


>gi|226451955|gb|ACO59157.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451957|gb|ACO59158.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451961|gb|ACO59160.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451963|gb|ACO59161.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451965|gb|ACO59162.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451967|gb|ACO59163.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451969|gb|ACO59164.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451973|gb|ACO59166.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451975|gb|ACO59167.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451977|gb|ACO59168.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451979|gb|ACO59169.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451981|gb|ACO59170.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451983|gb|ACO59171.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451985|gb|ACO59172.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451987|gb|ACO59173.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451989|gb|ACO59174.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451991|gb|ACO59175.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451993|gb|ACO59176.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451995|gb|ACO59177.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451997|gb|ACO59178.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 80/138 (57%), Positives = 105/138 (76%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 185 VGMATSIPSHNVQEICEA 202
           VGMAT+IP HN+ E+ + 
Sbjct: 121 VGMATNIPPHNLTEVIDG 138


>gi|228470872|ref|ZP_04055717.1| DNA gyrase subunit A [Porphyromonas uenonis 60-3]
 gi|228307269|gb|EEK16283.1| DNA gyrase subunit A [Porphyromonas uenonis 60-3]
          Length = 872

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 155/705 (21%), Positives = 263/705 (37%), Gaps = 104/705 (14%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
              +L YA   I ERA+P + DG KPV RR+++ M    L       K A+IVG  +   
Sbjct: 53  RHWFLDYASYVILERAVPHIEDGLKPVQRRVLYTMH---LMENGTLHKVAKIVGATMA-Y 108

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q     Y LI  QGN+GNI  GD AAA RY EA+++  A  IL 
Sbjct: 109 HPHGDASINDALVQLGQK---GY-LIDTQGNWGNILTGDEAAAGRYIEAKLSNFALEIL- 163

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
              +    +  +Y+ +  EPV  P++FP LLA G  GIAVG++  I  HN +E+ EAA A
Sbjct: 164 -FGDKITPWMKSYDGKSREPVYLPARFPLLLAQGAEGIAVGLSCKILPHNPKELIEAACA 222

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +            + + PDFPTGGII   R      Y  G+ G +V++R  +E +    
Sbjct: 223 HLRG--------EPFTLYPDFPTGGIIDVDR------YNDGKRGGQVKSRARIERIEDRV 268

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
             + V ++P+    S LI+ I +       +I  ++D+  E+A+    +       +  D
Sbjct: 269 --LSVRDLPFGKTTSTLIDSILKANDKGLIKIKRIDDMTAETAD----IRIYLPVGVSAD 322

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
             ++ ++  +D E     N  V+   + P+ + +  +L+  + H R +L      ++   
Sbjct: 323 KTIDGLYAFTDCEVSISPNACVIEDDK-PRFLGVSDLLRHSVEHTRGLLEEDLRLQLHDR 381

Query: 384 DRRV-----------EILKGLLIAYLNIDEIIA--IIRNEDKPKPVMVSRFSLTENQVDA 430
                            +  L       D+  A  +IR   +P         +T++ +  
Sbjct: 382 QEEYMGASLERLFIEHRIYKLPAFEDAPDQQTALDVIRKALEPIVGDSLLRPITDDDLAR 441

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L +++  + K    + +  +  L  E  +I   L+            + E      +  
Sbjct: 442 LLEIKMARILKFNLEKNEQLILRLTEEMAQIQHHLDHITDYAIHYYSSLLE------EYG 495

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               RRT        +   + +                   +LK +              
Sbjct: 496 AGWERRTQIGHFGSIEATKVVE------------------ENLKLYIDRKMGFAGTGIKG 537

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
            +        D +++   DG                             + I  A   D 
Sbjct: 538 GEYVCDCSEIDDMIVFFRDGTYLITKIEEKKFLGKERVLHINKYVRGDKRTIYNAIYLDG 597

Query: 611 TCKLLVVSSKGNAFIVEES--------EIIANTRKGKTF---LKVSSEEKMKLVVKVTGD 659
                  +          S        ++   T   K        + E +   +  + G 
Sbjct: 598 K------TKTSFIKRFHVSASVRDREYDLTMGTPGSKVLYFSANPNGEAESVTIKLLRG- 650

Query: 660 HVAVVGENRKLLIFSID--QIPEMSR-GKGVRL-------QSYKD 694
                G +R++L F+ D   I    R  KG  +        S K+
Sbjct: 651 -----GTSRRILFFNKDFADIAIKGRTAKGNIVTRAPIERISLKE 690


>gi|194293795|gb|ACF39992.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293799|gb|ACF39994.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 127/296 (42%), Positives = 195/296 (65%), Gaps = 3/296 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L     PQ++ 
Sbjct: 179 GISDLRDESDREGMRMVIDLKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 293


>gi|194293807|gb|ACF39998.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 128/296 (43%), Positives = 195/296 (65%), Gaps = 3/296 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L     PQV+ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NPPQVLN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 293


>gi|194293775|gb|ACF39982.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293805|gb|ACF39997.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 127/296 (42%), Positives = 195/296 (65%), Gaps = 3/296 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L     PQ++ 
Sbjct: 179 GISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 293


>gi|33469560|gb|AAQ19805.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 149

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 68/149 (45%), Positives = 107/149 (71%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           +   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S
Sbjct: 1   SKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           +Y+++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V 
Sbjct: 61  IYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVS 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           F   +++ + EP V P+ FPNLL NG+SG
Sbjct: 121 FAWNFDDTEKEPTVLPAAFPNLLVNGSSG 149


>gi|3411096|gb|AAC31147.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 117/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|298373528|ref|ZP_06983517.1| DNA topoisomerase 4 subunit A [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274580|gb|EFI16132.1| DNA topoisomerase 4 subunit A [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 905

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 126/581 (21%), Positives = 231/581 (39%), Gaps = 40/581 (6%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +  + +    I  RAIP + DG KPV RR++++M  M       + K A +VG  + + H
Sbjct: 52  KWQMDFGSYIILNRAIPHINDGLKPVQRRVLYSMRRM---EDGRYNKVANVVGHTM-QFH 107

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQG 146
           PHGD S+Y +LV L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A   +  
Sbjct: 108 PHGDSSIYGALVGLGQ----KNILIDTQGNWGNILTGDPAAAARYIEARLSRFALDTV-- 161

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            +    +++ +Y+  + EPV  P KFP LLA G+ GI  G+ T I  HN  E+ +A +  
Sbjct: 162 FNPKTTEWKPSYDGRNDEPVALPVKFPLLLAQGSEGIGYGLNTKILPHNFNELIDATILY 221

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +   E        + + PDFPTGG+I  SR      Y  G  G +V  R  + +    + 
Sbjct: 222 LQGKE--------FCLYPDFPTGGMIDVSR------YNDGERGGKVMMRVNITK-SADNK 266

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            +++  +PY +  ++LIE I      K    ++ I D +AE V I+L         D  +
Sbjct: 267 SLIINNVPYGLDTAKLIESII-QANEKGKINIKKIDDNTAEGVEIIL-HLEAKTSLDKTI 324

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D +T++      +     P  + +  +L+    +   +L +        +  +
Sbjct: 325 DALYAFTDCQTQYSP-NCCVIDNNKPVFVTVSEVLRRSADNTVGLLRKELDIERHELSEQ 383

Query: 387 VEILKGLLIAY-LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           +       I     I +       + +   +      +   + D +  +    LRKL + 
Sbjct: 384 LLFASLEKIFIEERIYKDPEFENAKSEDIALKHIDRRIEPYKKDFVRTVTRDDLRKLLDI 443

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +              +    +  +     I   I EV        +   +   + + +  
Sbjct: 444 R----------MARILKFNTDKAEANIAAIRGAIEEVDYKLDNIIEHSIKWFEYLKKTYG 493

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
                Q  +   E I          +   S        + K+ + ++   +    D +++
Sbjct: 494 KNYQRQTEIRSFENIEATKVVEANEKLYVSRKEGFVGTNLKKEEDIEFVQNCSDIDDVIV 553

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
              DGK   +            E + +    +        +
Sbjct: 554 FFKDGKYKVVKISEKQFVGKDIEYVAVYKRNDQRTIFNAIY 594


>gi|226451971|gb|ACO59165.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 80/138 (57%), Positives = 106/138 (76%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+   +KKSAR+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 185 VGMATSIPSHNVQEICEA 202
           VGMAT+IP HN+ E+ + 
Sbjct: 121 VGMATNIPPHNLTEVIDG 138


>gi|253571133|ref|ZP_04848540.1| topoisomerase IV subunit A [Bacteroides sp. 1_1_6]
 gi|251839086|gb|EES67170.1| topoisomerase IV subunit A [Bacteroides sp. 1_1_6]
          Length = 881

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 149/690 (21%), Positives = 261/690 (37%), Gaps = 61/690 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DENVKHQ-LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRL---DDGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  I+   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDIV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +      +         PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGESFQLY--------PDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++   +  I  TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKINKLDNKTLAI--TEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                     D  +++++  +D E     N  V+   + P  + +  +LK+   +   +L
Sbjct: 294 -VHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSK-PHFLTVSKVLKKSADNTLGLL 351

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVDAI 431
            +    +   I   +       I                            LT      I
Sbjct: 352 KQELEIKKGEILESLHFASLEKIFIEERIYKDKEFEQSKDMDAACAHIDDRLTPFYPSFI 411

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
             +           +        +     +    +   +   ++  EI E+ +  +   D
Sbjct: 412 REVT----------KEDILKLMEIKMGRILKFNTDKADELIARMKEEIAEIDDHLAHIVD 461

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                  + ++ +           E      + + +    + K +               
Sbjct: 462 Y---TVNWYQMLKNKYGKNFPRRTELRNFDTIEAAKVVEANEKLYINRDEGFIGTALKKD 518

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI--VTAFVYD 609
           +   +    D +++   DGK    P  +     G       +   N  + I  +T     
Sbjct: 519 EFVANCSDIDDVIVFFRDGKYIVTPVAD-KKFVGKNILYVNVFKKNDKRTIYNITYRDGK 577

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKT---FLKVSSEEKMKLVVKVTGDHVAVVGE 666
                +   +        E ++   T   +        + E ++  V       V     
Sbjct: 578 EGTTYIKRFAVTGVVRDREYDVTQGTPDSRITYFSANPNGEAEIIKVTLKPNPRV----- 632

Query: 667 NRKLLIF--SIDQIPEMSR-GKGVRLQSYK 693
             + +IF     +I    R  +GV L    
Sbjct: 633 --RRIIFERDFSEISIKGRQAQGVILTRLP 660


>gi|194293809|gb|ACF39999.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 128/296 (43%), Positives = 195/296 (65%), Gaps = 3/296 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKLASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L     PQV+ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQVLN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 293


>gi|99035107|ref|ZP_01314893.1| hypothetical protein Wendoof_01000267 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 711

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 142/637 (22%), Positives = 247/637 (38%), Gaps = 91/637 (14%)

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            ++NPE++ ++LLE + GPDFPTGG I+  R  I  ++  GRG   V+ +  +E++ +  
Sbjct: 5   YVNNPEVTFDELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVVQGKTHIEDLPQDR 63

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+ EIPYQV K +LIEKI EL+  KRI  + +IRDES +    V+    R+ +   +
Sbjct: 64  QAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLKRNAEASFI 123

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  I  L+ + + F +N  VL+    P +M L  I+  ++  R+EVL RR+ FR++    
Sbjct: 124 LNQILGLTPLRSSFSVNTLVLN-NNRPALMSLKEIITAFVDFRKEVLIRRTEFRLRKTRE 182

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------------------------- 419
           +  I  GL IA L+IDE+I IIR    P                                
Sbjct: 183 KAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFL 242

Query: 420 ---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               + LTE Q+ AIL+++L+ L  LE+ ++++EL +++   ++  + L SG++   +I 
Sbjct: 243 KDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMKEIK 302

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
             ++E K  F+         +     +          +       +        R+ +  
Sbjct: 303 NNLQETKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRG 362

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
                    KE D +      +T    L  S  G+ Y L    L        G A+  + 
Sbjct: 363 GKGKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIF 422

Query: 595 DLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            L+  + I          D    ++  ++ GN      ++       GK  +K+   +K+
Sbjct: 423 PLSDGETITNIMPLPSENDENQNIVFATAYGNIRRNSLADFHYIPSNGKIAIKLDEGDKL 482

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSY-KDGGISDVICFK-- 704
             V      DHV +     K + F +  + +  SR   GVR     K+  +  +      
Sbjct: 483 VSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVKNDSVISMTILNGI 542

Query: 705 ------------------------------------------------ICEGLTWIDSAG 716
                                                                  +    
Sbjct: 543 GVATETKELYLKVPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTITE 602

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +  +     +  RGGVG        R+G  ++S
Sbjct: 603 NGFGKRTSAYEYRVTNRGGVGITNILTTSRNGNVVAS 639



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
           +   +L ++  G        E     R G     +     +   +       GD++ ++ 
Sbjct: 593 NEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRNGNVVASFPVEQGDNIMLIT 652

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +  KL+  S+++I    R  +GV L  +K      V+     E 
Sbjct: 653 DKGKLIRISVNEIRIAGRSTQGVTL--FKTESREKVVSVAKIED 694


>gi|302340476|ref|YP_003805682.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta smaragdinae DSM
           11293]
 gi|301637661|gb|ADK83088.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta smaragdinae DSM
           11293]
          Length = 643

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 134/480 (27%), Positives = 214/480 (44%), Gaps = 43/480 (8%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
              +L YA   IK+RAIPD+ DG KPV RRI+H++ E        F K A IVG  + K 
Sbjct: 9   NRNFLEYASYVIKDRAIPDIGDGLKPVQRRILHSLFE---VDDGKFHKVANIVGHCM-KY 64

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+Y +LV LA     +   I  QGNFGN I GD A+A RY E R+   A+ +L 
Sbjct: 65  HPHGDASIYSALVVLA----NKDLFIDKQGNFGNPITGDEASAARYIECRILPFAKKVLY 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
                  ++ D+Y+  + EPVVFPSK P LL  G  GIAVGM+T I  HN +E+  A ++
Sbjct: 121 --SPQVTEYVDSYDGRNREPVVFPSKIPVLLIQGAEGIAVGMSTKILPHNFEEVLRAVVS 178

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +            + + PDFP GG++  S       Y+ G G   +RA+   ++     
Sbjct: 179 ELKG--------EPFQLFPDFPNGGLVDVSD------YQDGLGKVLIRAKLDTKDPK--- 221

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++ EIP+      LI  I       R+  +  I D ++E V I      R +    +
Sbjct: 222 -RIIIKEIPFGTTTESLIASIEAAARKGRVK-ISQINDYTSEAVEIE-IKLARGVYTKEV 278

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           ++S+F  +D E    +N+ ++    +P  M +  +++        VL          +  
Sbjct: 279 VDSLFAYTDCEYSVSVNL-LVIKDGLPTQMTVPEVIRYHARQLVAVLEAELKVEEADLKE 337

Query: 386 RVEIL--KGLLIAYLNIDEIIAIIRNEDKPKP--------VMVSRFSLTENQVDAILNLR 435
           ++     + + I       I  +   E                    +TE  V+ +L + 
Sbjct: 338 KIHARTLERIFIEERIYKRIEEMKTRETVISAVIEGFKPFKKEIPREVTEEDVERLLKIP 397

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG-KQQWNQIACEIREVKEIFSKSTDLGR 494
           +R +   +  + + EL  L    +++   L +        I   +++    F + T +GR
Sbjct: 398 IRRISLYDIEKARKELAELQGRLKEVRYHLKNLVAYAIGFIEGVLKDTAGRFPRRTKVGR 457


>gi|297242245|gb|ADI24795.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242263|gb|ADI24804.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 86/181 (47%), Positives = 127/181 (70%), Gaps = 1/181 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG   
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVI 180

Query: 252 V 252
           V
Sbjct: 181 V 181


>gi|78771378|gb|ABB51164.1| GyrA [Escherichia coli]
          Length = 128

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 73/122 (59%), Positives = 96/122 (78%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKS
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 136 MT 137
           + 
Sbjct: 127 LA 128


>gi|33469562|gb|AAQ19806.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 146

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 69/146 (47%), Positives = 106/146 (72%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD
Sbjct: 1   IIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDASIYD 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F  
Sbjct: 61  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAW 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSG 182
            +++ + EP V P+ FPNLL NG+SG
Sbjct: 121 NFDDTEKEPTVLPAAFPNLLVNGSSG 146


>gi|194293813|gb|ACF40001.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 127/296 (42%), Positives = 194/296 (65%), Gaps = 3/296 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L     PQ++ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           L  +L  ++   ++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 LKQVLVHYINFPKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 293


>gi|297242281|gb|ADI24813.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  267 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 128/178 (71%), Gaps = 1/178 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G + D  S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGASDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|3411098|gb|AAC31148.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411100|gb|AAC31149.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  267 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 116/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYGAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|167861156|gb|ACA05281.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 83/148 (56%), Positives = 111/148 (75%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G SGIAV MAT+IP HN+ E+    LA 
Sbjct: 121 GASGIAVRMATNIPPHNLTEVINGCLAY 148


>gi|219815941|gb|ACL37057.1| GyrA [Salmonella enterica]
          Length = 122

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/122 (59%), Positives = 97/122 (79%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+
Sbjct: 1   IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A 
Sbjct: 61  VIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 120

Query: 142 LI 143
            +
Sbjct: 121 EL 122


>gi|3411080|gb|AAC31138.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411082|gb|AAC31139.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411084|gb|AAC31140.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411086|gb|AAC31141.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411088|gb|AAC31142.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411090|gb|AAC31143.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411092|gb|AAC31144.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 133

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/130 (53%), Positives = 98/130 (75%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVA 140
           YTEARMT++ 
Sbjct: 123 YTEARMTKIT 132


>gi|46406038|gb|AAS93684.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 142

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/142 (57%), Positives = 112/142 (78%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLL 120

Query: 177 ANGTSGIAVGMATSIPSHNVQE 198
            NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VNGSSGIAVGMATNIPPHNLTE 142


>gi|11863183|gb|AAD43488.2| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 126

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/125 (55%), Positives = 95/125 (76%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKS
Sbjct: 1   RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+
Sbjct: 61  ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 136 MTQVA 140
           MT++ 
Sbjct: 121 MTKIT 125


>gi|11863185|gb|AAD43498.2| DNA gyrase subunit A [Staphylococcus hominis subsp. hominis]
 gi|12585583|gb|AAG49417.1| gyrase [Staphylococcus hominis subsp. hominis]
          Length = 126

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/125 (55%), Positives = 95/125 (76%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKS
Sbjct: 1   RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+
Sbjct: 61  ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 136 MTQVA 140
           MT++ 
Sbjct: 121 MTKIT 125


>gi|117654329|gb|ABK55595.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 218

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/218 (51%), Positives = 157/218 (72%), Gaps = 1/218 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            E+PYQV K+RLI KIA+L+  K+   + D RDES  +
Sbjct: 180 PELPYQVNKARLIXKIADLVRDKKXEGITDXRDESDXN 217


>gi|187917917|ref|YP_001883480.1| DNA topoisomerase IV subunit A [Borrelia hermsii DAH]
 gi|119860765|gb|AAX16560.1| hypothetical protein BH0035 [Borrelia hermsii DAH]
          Length = 627

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 147/642 (22%), Positives = 263/642 (40%), Gaps = 60/642 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + ++  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIKTLLKDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN + GD A+A RY E R+T 
Sbjct: 58  GNAM-KYHPHGDTSIYEALVNMA----NKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP++FP+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITSYEPSYDGRNNEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      +         PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILSAVKSELLGESYELY--------PDFPTG--------GIVDVNEYADGNGKVLVRARI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E    +  I++ E+P+      LI  I   I    I  +  I D + E+V I L    R
Sbjct: 215 -EPTDDNKAILIKELPFGETTESLIASIERAIRKNYIK-VSSINDFTTENVEIEL-TLPR 271

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +L   R P +  +  I+K    H ++VL      
Sbjct: 272 GVYASEVIEKLYHYTNCQVSISVNLLLL-SERYPVIYTITDIIKFHAEHLQKVLKMELEL 330

Query: 379 RMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
               I  ++     + + I       +  I +  D    V+       ++    I+   +
Sbjct: 331 EKSKILEKIFSKTLEQIFIEKKIYKILETISKESDVVGIVLSEILKYKDSLSRDIVLDDI 390

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
            +L K+   +I                 +    +    I    +E++ + S    +    
Sbjct: 391 ENLLKIPIRKI----------------SMFDIDKNNKDIRTLSKELRSVESNIRSIRGYS 434

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
             F +   A  + +     E   I          +++K +    +          +   +
Sbjct: 435 INFVDKLLAKYSKIYHRKTEISLIKSKNVREIATKNMKVYLNLKAGFVGTSLIDGEFIGN 494

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A   D+IL+      +Y L      +         L+ D+N+++D V + +Y S      
Sbjct: 495 ASYYDKILIFKK--NSYILKNIEDKTFIDKNNVNALIYDINNSKDQVFSIIYLSKTDNFY 552

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                     +  + I +    K +  ++  ++   +    G
Sbjct: 553 -----YVKRFKIDKFITD----KVYKFLNDGDEFVDLALNPG 585


>gi|203283964|ref|YP_002221704.1| DNA topoisomerase IV, A subunit [Borrelia duttonii Ly]
 gi|201083407|gb|ACH92998.1| DNA topoisomerase IV, A subunit [Borrelia duttonii Ly]
          Length = 627

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 152/621 (24%), Positives = 264/621 (42%), Gaps = 45/621 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++++  L + +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MNIKTLLRDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN + GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNMA----NKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP++FP+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFEVLY--SKEITTYEPSYDGRNAEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      +         PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILRAVKSELLGEAYKLY--------PDFPTG--------GIVDVNEYADGNGKVLVRAKI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E    +  I++ E+P+      LI  I   I    I  +  I D + E+V I L    R
Sbjct: 215 -EPTDDNKAILIKELPFGETTESLIASIERAIRKNYIK-VSSINDFTTENVEIEL-TLPR 271

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +  + ++E ++  ++ +    +N+ +LS  R P +  +  I+K    H ++VL      
Sbjct: 272 GVYANEIIEKLYHYTNCQVSISVNLLLLSD-RYPVIYTVTDIIKFHAEHLQKVLKMELEL 330

Query: 379 RMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
               I  ++     + + I +     +  I +  D    VM       +     I+   +
Sbjct: 331 ERSKILEKIFSKTLEQIFIEHKIYKILETISKESDVVDIVMSEIVKYGDRFSRKIVLDDI 390

Query: 437 RSLRKLEEYQI-KSELDNLLAEKEKIDSLLNSGKQQWNQIACE-IREVKEIFSKSTDLGR 494
            +L K+   +I   ++D    + + +   L S +     I    I  + ++ +K + +  
Sbjct: 391 ENLLKIPIRKISMFDIDKNNKDIQILSKELKSVESNIESIKNYAINFIDKLLAKYSKMYH 450

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           R+T   E+S  +    ++   +   I V +       SL       +A ++ +    K  
Sbjct: 451 RKT---EISLIESKNAREIATKNMKIYVSLKAGFVGTSLIDGEFIGNASYYDKVLIFKKD 507

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
            +                  L    +       E +  +I LN   +      +     L
Sbjct: 508 SYILKNIEDKTFIEKNNVSVL----VYDINNSKEQVFSIIYLNKVDNFYYVKRFRIDKFL 563

Query: 615 LVVSSKGNAFIVEESEIIANT 635
              + K   F+ ++ E I  T
Sbjct: 564 ---TDKVYYFLNKDDEFIDFT 581


>gi|115380010|ref|ZP_01467060.1| hypothetical protein STIAU_4480 [Stigmatella aurantiaca DW4/3-1]
 gi|115362989|gb|EAU62174.1| hypothetical protein STIAU_4480 [Stigmatella aurantiaca DW4/3-1]
          Length = 612

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 180/591 (30%), Positives = 301/591 (50%), Gaps = 24/591 (4%)

Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223
           EP+V PS+ P LL NGT+GIAVGMAT+IP H++ E+C+A  ALI+N  ++++ L++++ G
Sbjct: 3   EPIVIPSRLPQLLMNGTTGIAVGMATNIPPHHLGELCDALAALIENGNLAVKDLMKFVKG 62

Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283
           PDFPTGG I+ S+  + E Y  G+G  R+R  + +E+V +G   I++T IPY V KS L+
Sbjct: 63  PDFPTGGQILNSKAELREIYETGQGSVRIRGEYALEDVKKGGQQIIITSIPYTVNKSTLV 122

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
            KI +L+  +++PLL D+RDES ++VRIVL  K  +  P+L+M  ++  + ++T F +N+
Sbjct: 123 SKIGDLVRERKLPLLLDVRDESTKEVRIVLEFKRDA-SPELVMAYLYKHTPLQTNFGVNL 181

Query: 344 NVLSMG-----RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             L          P+ + L  IL+ +L  R EV+ +R    +  + +RV IL+G    Y 
Sbjct: 182 TCLVPTDNPEVGAPKRLDLKSILQYFLDFRFEVVTKRFQHELGELQKRVHILEGFEKVYD 241

Query: 399 NIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
            +DE+I IIR           +++RF L E QVDAIL ++L  L +LE   I+ EL    
Sbjct: 242 ALDEMIRIIRASEGKQDAAKKLMARFKLDEVQVDAILEMKLYKLARLEILVIQEELKQKR 301

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            E ++I+ +L   ++ W  +  E+ E+K  ++      +RRT        +    + A I
Sbjct: 302 LEVKRIEGILKDKRKLWGTVKDELAEIKATYND-----KRRTRIGGAGSEEVEFSEDAFI 356

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             E   VV++  GWI+ ++    D S    +EGD++   L       ++L S  G AY  
Sbjct: 357 VDEDAHVVLTRDGWIKRVRE-VKDPSTTRLREGDAVMTVLAGSLKSNLVLFSNFGAAYVT 415

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEES-E 630
              ++ +  G+G+ +Q L   +  + IV A   DS      KL+ V+  G          
Sbjct: 416 RFNDVPASTGYGDPVQKLFKFDDGERIVGALSLDSRLPRPQKLVAVTKDGLGLRFPLEGH 475

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEM-SRGKGVR 688
           +  +TR G+ + K    +++  V  V    +  V  E     +    ++ E+   GKGV 
Sbjct: 476 VEVSTRSGRRYAKTGEGDEIIGVQPVGEKDLLAVLTERTYATVCRAAEVNELAGPGKGVL 535

Query: 689 LQSYKDGGISD--VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           +   + G      +      +  +      +    + +     +  RGG G
Sbjct: 536 VIKVEPGDRVMEFLAVAPGQKDASITFETQKGRKLTLSPAKYEVTGRGGKG 586


>gi|11863187|gb|AAD43499.2| DNA gyrase subunit A [Staphylococcus hominis]
          Length = 126

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/125 (55%), Positives = 95/125 (76%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKS
Sbjct: 1   RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+
Sbjct: 61  ARIVGDVMGKYHPHGDASIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 136 MTQVA 140
           MT++ 
Sbjct: 121 MTKIT 125


>gi|27262984|emb|CAD19825.1| gyrase A subunit [Yersinia ruckeri]
 gi|27262986|emb|CAD19826.2| gyrase A subunit [Yersinia ruckeri]
          Length = 134

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/134 (58%), Positives = 104/134 (77%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+
Sbjct: 61  VDGDSAAAMRYTEVRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGS 120

Query: 181 SGIAVGMATSIPSH 194
           SGIAVGMAT+IP H
Sbjct: 121 SGIAVGMATNIPPH 134


>gi|308813249|ref|XP_003083931.1| DNA gyrase A subunit (ISS) [Ostreococcus tauri]
 gi|116055813|emb|CAL57898.1| DNA gyrase A subunit (ISS) [Ostreococcus tauri]
          Length = 475

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRRI+  M E+GL      +K AR+VG+V+GK HPHGD +VY++LVRLAQ F    P
Sbjct: 32  KPVHRRILFGMHELGLRSDKPHRKCARVVGDVLGKFHPHGDGAVYEALVRLAQDFSMSAP 91

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           L+ G GNFG++D D  AA RYTE R+ +V+E  +L  +  + V F +T++   +EP V P
Sbjct: 92  LVDGHGNFGSLDDDPPAAMRYTECRLNKVSEKALLADIASECVGFTETFDGSQTEPEVLP 151

Query: 170 SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
           ++ PNLL NG+SGIAV +AT++  HN+ E       
Sbjct: 152 ARVPNLLINGSSGIAVAVATNMAPHNLGEALSGRSH 187


>gi|297242257|gb|ADI24801.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/181 (46%), Positives = 127/181 (70%), Gaps = 1/181 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARAVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG   
Sbjct: 121 PPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVI 180

Query: 252 V 252
           +
Sbjct: 181 L 181


>gi|117654165|gb|ABK55513.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 109/224 (48%), Positives = 160/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP+V  ++FPNLL NG +GIAVGMAT+IP H + EI +  LA+  N 
Sbjct: 61  TIDYQDNYDGSEREPIVMXARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNX 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           E+++ +L+E I GPDFPT G+I   R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMI-MGRSGIRKAYETGRGSITIRAKAQIEETSXGKQVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K++LIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|203287507|ref|YP_002222522.1| DNA topoisomerase IV [Borrelia recurrentis A1]
 gi|201084727|gb|ACH94301.1| DNA topoisomerase IV [Borrelia recurrentis A1]
          Length = 627

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 151/627 (24%), Positives = 263/627 (41%), Gaps = 57/627 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++++  L + +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MNIKTLLRDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN + GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNMA----NKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP++FP+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFEVLY--SKEITTYEPSYDGRNAEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      +         PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILRAVKSELLGEAYKLY--------PDFPTG--------GIVDVNEYADGNGKVLVRAKI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E    +  I++ E+P+      LI  I   I    I  +  I D + E+V I L    R
Sbjct: 215 -ETTDDNKAILIKELPFGETTESLIASIERAIRKNYIK-VSSINDFTTENVEIEL-TLPR 271

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +  + ++E ++  ++ +    +N+ +LS  R P +  +  I+K    H ++VL      
Sbjct: 272 GVYANEIIEKLYHYTNCQVSISVNLLLLSD-RYPVIYTVTDIIKFHAEHLQKVLKM---- 326

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
                +  +E  K L   +    E I I     K    +     + +  +  I+    R 
Sbjct: 327 -----ELELERSKILEKIFSKTLEQIFIEHKIYKILETISKESDVVDIVMSEIVKYGDR- 380

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
                  +I  +    L +       +    +    I    +E+K + S    +      
Sbjct: 381 ----FSRKIVLDDIENLLKIPIRKISMFDIDKNNKDIQILSKELKSVESNIKSIKNYAIN 436

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
           F +   A  + +     E   I    +     +++K +    +          +   +A 
Sbjct: 437 FIDKLLAKYSKMYHRKTEISLIESKNAREIATKNMKIYVSLKAGFVGTSLIDGEFIGNAS 496

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLL 615
             D+IL+      +Y L      +         L+ D+N++++ V + +Y         +
Sbjct: 497 YYDKILIFKK--DSYILKNIEDKTFIEKNNVSVLVYDINNSKEQVFSIIYLNKVDNFYYV 554

Query: 616 -------VVSSKGNAFIVEESEIIANT 635
                   ++ K   F+ ++ E I  T
Sbjct: 555 KRFRIDKFLTDKVYYFLNKDDEFIDFT 581


>gi|219815927|gb|ACL37050.1| GyrA [Salmonella enterica]
          Length = 123

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/123 (59%), Positives = 97/123 (78%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VI
Sbjct: 1   EELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI 60

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  +
Sbjct: 61  GKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHEL 120

Query: 144 LQG 146
           +  
Sbjct: 121 MAD 123


>gi|297242229|gb|ADI24787.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/177 (48%), Positives = 126/177 (71%), Gaps = 1/177 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|194293789|gb|ACF39989.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 128/296 (43%), Positives = 195/296 (65%), Gaps = 3/296 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNPVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L     PQV+ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQVLN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 293


>gi|257456947|ref|ZP_05622128.1| DNA gyrase subunit A [Treponema vincentii ATCC 35580]
 gi|257445656|gb|EEV20718.1| DNA gyrase subunit A [Treponema vincentii ATCC 35580]
          Length = 642

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 154/688 (22%), Positives = 258/688 (37%), Gaps = 87/688 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +       +L YA   I++RAIPD+ DG KPV RRI+H++ EM       F K A +VG 
Sbjct: 4   VESLFNTNFLEYASYVIRDRAIPDVEDGLKPVQRRILHSLFEM---DDGKFHKVANVVGY 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + K HPHGD S+ ++L  LA     +   I  QGNFGN+  GD A+A RY E R+T+ A
Sbjct: 61  CM-KYHPHGDASIGNALTVLA----NKSLFIDKQGNFGNLFTGDEASAPRYIECRITEFA 115

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + IL   +     +  +Y+  + EPVVF +K P +L  G  GIAVGM+T I  HN++EI 
Sbjct: 116 KDIL--FNPHITRYVPSYDGRNKEPVVFRAKLPVVLLIGAEGIAVGMSTKILPHNIREII 173

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA    +            + + PDF TGG+I  S       Y+ G+G   VRA+    +
Sbjct: 174 EAEKDCLSGK--------SFTLYPDFQTGGLIDVSE------YQDGKGKVLVRAKLDTSD 219

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  IV+ E+P+      LI  I     + ++  + +I D +AE V I L    R +
Sbjct: 220 DK----RIVIRELPFGSTTESLIASIESASKSGKVK-ISEINDYTAEQVEIEL-KLPRGV 273

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
               ++++++  +D E     N+ V+    +P    +  ++K        +L     +  
Sbjct: 274 YASDVVDALYAFTDCEQSISCNLLVIQD-NLPVQTSVTEVIKTHAKQLTALLKDELMYEQ 332

Query: 381 QAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------FSLTENQVDA 430
           + +  R+ +   + + I      +I  +   E   K V+             +TE  VD 
Sbjct: 333 EMLTDRLHLRTLERIFIEERIYKKIETMKTAESVIKAVIKGFEPFKAELIREVTEEDVDR 392

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L + +R +   +  + ++E+  + A  ++I  LL + K+    +   I           
Sbjct: 393 LLKIPIRRISLYDIQKNRAEVQEISARLKEIARLLKNLKKYALSVLDGILAKL-----PP 447

Query: 491 DLGRRRTTFC--------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++  R+T           E    D +             V         S       L  
Sbjct: 448 EVTARKTEITGFTKVDVKEAVNRDLSLRYDEATGYLGTAVTTGKEILKVSPYDRIFILRK 507

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
                   +   L   T       +       +    +               +      
Sbjct: 508 SGVYTVMDVPDRLFVDTGMWYCGFAEKELLSQILFTVIYKDEKTQYPYIKRARVESYILN 567

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
                   T  +L  S+  N       + +   R                          
Sbjct: 568 RDYLFVPDTATVLYASTAENFEFTV--QYVPKPR-------------------------- 599

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRL 689
              +  +   F     PE   + +GVRL
Sbjct: 600 --TKKNEA-RFKTADYPEKGLKAQGVRL 624


>gi|297242303|gb|ADI24824.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/178 (47%), Positives = 126/178 (70%), Gaps = 1/178 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKS R VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSGRTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|208972177|gb|ACI32672.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 120

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/120 (60%), Positives = 96/120 (80%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +
Sbjct: 61  PHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADL 120


>gi|117654317|gb|ABK55589.1| DNA gyrase subunit A [Bacillus sonorensis]
          Length = 204

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 104/203 (51%), Positives = 150/203 (73%), Gaps = 1/203 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 DITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAK 293
           TEIPYQV K+RLIEKIA+L+  K
Sbjct: 180 TEIPYQVNKARLIEKIADLVRDK 202


>gi|9081889|gb|AAF82627.1| topoisomerase II subunit A [Staphylococcus hominis]
          Length = 143

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/141 (58%), Positives = 110/141 (78%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 1   PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+MT++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 61  YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATN 120

Query: 191 IPSHNVQEICEAALALIDNPE 211
           IP HN+ E+ +  L L  NP+
Sbjct: 121 IPPHNLTEVIDGVLRLSQNPD 141


>gi|3411102|gb|AAC31150.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 117/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|297242297|gb|ADI24821.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/181 (47%), Positives = 128/181 (70%), Gaps = 1/181 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           +KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG  
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGHT 180

Query: 252 V 252
           V
Sbjct: 181 V 181


>gi|9081891|gb|AAF82628.1| topoisomerase II subunit A [Staphylococcus capitis]
          Length = 143

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 111/141 (78%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 1   PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 61  YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 120

Query: 191 IPSHNVQEICEAALALIDNPE 211
           IP HN+ E+ +  L+L  NP+
Sbjct: 121 IPPHNLTEVIDGVLSLSKNPD 141


>gi|194293769|gb|ACF39979.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 127/296 (42%), Positives = 194/296 (65%), Gaps = 3/296 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L     PQ++ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NHPQILN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR    
Sbjct: 238 LKQVLVHYINLQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRRSKT 293


>gi|229496072|ref|ZP_04389794.1| DNA gyrase subunit A [Porphyromonas endodontalis ATCC 35406]
 gi|229316968|gb|EEN82879.1| DNA gyrase subunit A [Porphyromonas endodontalis ATCC 35406]
          Length = 899

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 137/613 (22%), Positives = 238/613 (38%), Gaps = 69/613 (11%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +     + V+  SL       +L YA   I ERA+P + DG KPV RRI++AM    L  
Sbjct: 35  TRPQPTDVVRLHSLPQMYRTWFLDYASYVILERAVPHIEDGLKPVQRRILYAMQ---LFE 91

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP-FVQRYPLISGQGNFGN-IDGDSA 126
                K A+IVG+ +   HPHGD S+ D+LV+L Q  F     LI  QGN+GN + GD A
Sbjct: 92  NGHLHKVAKIVGQTMA-FHPHGDASINDALVQLGQKGF-----LIDTQGNWGNTLTGDEA 145

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EA+++ +A  +L   D    +++ TY+    EPV  P +FP LLA G  GIAVG
Sbjct: 146 AAGRYIEAKLSSLALEVL--FDSKLTEWKRTYDGTADEPVALPVRFPLLLAQGAEGIAVG 203

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           +++ I  HN +E+ EAA+A +      +         PDFPTGG++   +      Y  G
Sbjct: 204 LSSRIYPHNPKELLEAAIAYLRGESFELY--------PDFPTGGLLDVDK------YNDG 249

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G  ++ R  +E++      I  TE+P+    + LIE I +    K    ++ I D +A
Sbjct: 250 HRGGALKCRAKIEKIDDRVLSI--TELPFGKTTTSLIESILKA-NEKGKIKIKHIDDMTA 306

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
               I        +  D  ++ ++  +D E         +     P  + +  +LK    
Sbjct: 307 ATADI-RIQLPAGVSTDKTIDGLYAFTDCEVGLSP-NACVIKEGTPVFLGVSDLLKYSAD 364

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYL-------------NIDEIIAIIRNEDKP 413
             +E+L  + ++R+  +   +       I                   + +  +R   + 
Sbjct: 365 RTKELLVAQLNYRLGEVQDALVTASLERIFIENRIYKDKPFEEAACEADALDHVRKRIEA 424

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
              +V    +TE  +  +L +++  + +    + +  +  L+ +   I+  L        
Sbjct: 425 MEDLVFVRPITEADLKRLLEIKMARILRFNIEKHEERIAQLMRDARTIEKHL---AHSTQ 481

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
                   + + F        R+TT       +   + +A                    
Sbjct: 482 YTIDYYTRLLKEFG---AGWTRKTTIARFGTIEATKVIEATE------------------ 520

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K +             + +        D ++++  +G                       
Sbjct: 521 KLYFDREGGFAGTGLKNAEFVAECSLLDEMIVIFRNGTYRISKIEEKKFIGRGEVLYINR 580

Query: 594 IDLNHNQDIVTAF 606
              N N+ I    
Sbjct: 581 FRRNDNRTIYNII 593


>gi|146231451|gb|ABQ12873.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 147

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 68/147 (46%), Positives = 105/147 (71%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
             I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+Y
Sbjct: 1   YIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR++Q +  R  L+   GN G++DGD  A  RYTEAR++++A  +LQ ++++ V F 
Sbjct: 61  DAMVRMSQNWKNREILVEMHGNNGSMDGDPPAVMRYTEARLSEIAGYLLQDIEKNTVSFA 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             +++ + EP V P+ FPNLL NG+SG
Sbjct: 121 WNFDDTEKEPTVLPAAFPNLLVNGSSG 147


>gi|330466713|ref|YP_004404456.1| DNA topoisomerase IV subunit A [Verrucosispora maris AB-18-032]
 gi|328809684|gb|AEB43856.1| DNA topoisomerase IV subunit A [Verrucosispora maris AB-18-032]
          Length = 1256

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 159/656 (24%), Positives = 297/656 (45%), Gaps = 44/656 (6%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEARM++ A L++  + E+ VD    Y+   ++P V P+ FPNLL NGTSGIAVGMAT++
Sbjct: 564  TEARMSREAMLLVGELGEETVDVEPNYDGSLTQPTVLPAAFPNLLVNGTSGIAVGMATNM 623

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
              HN+ E+  AA  LI +P  +++KL+E++ GPD PTGG+++   + +  +Y  GRG  R
Sbjct: 624  IPHNLGEVVSAARWLIRHPNATLDKLMEFVPGPDLPTGGLLLG-LDEVRRAYETGRGVVR 682

Query: 252  VRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKI-AELIIAKRIPLLEDIRDESAED 308
            +R +  +   E  RG   I V E+PY V   ++I  I  E+   KR+  + D++D +  +
Sbjct: 683  MRGKVEIGPLEGSRGRQAITVVELPYGVGAEKVIAAITNEVTKTKRLTGIADVKDLTDRE 742

Query: 309  V-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
                ++      ++P  L+  ++ L+ +E  F +N  VL     P+ + L  +L+ +LAH
Sbjct: 743  NGTRLVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVD-GQPRTLGLKALLEVFLAH 801

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLT 424
            R EV+ RRS++R +    R+ ++ GLLIA L+ID+++ +IR  +  +      + +F L+
Sbjct: 802  RYEVVTRRSAYRRRKRQERLHLVDGLLIALLDIDKVVKLIRASEDAQAAKDGLMQKFKLS 861

Query: 425  ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
            E Q   IL+  LR L K +  ++++E + L AE  ++ ++L+        ++ E+  V +
Sbjct: 862  EIQASYILDTPLRRLTKYDRLELEAEQEKLRAEIAELSTILDDENVLKKLVSDELAAVVK 921

Query: 485  IFSKSTDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDL 540
             F+       RRTT  +    +               +P  V++S  G +    + S + 
Sbjct: 922  QFAAP-----RRTTLVDGDLKEVLAASAPAGPLEVADDPCQVILSATGLVARTAAESEEA 976

Query: 541  SALHFKEGDSLKIALHAHTTD----RILLLSTDGKAYTLPAGNLLSGRGH--------GE 588
            +    + G     A+ A        R+LL+++ G+A+ +    L              G 
Sbjct: 977  AEGRRRHGRVKHDAVRAVVHSTARGRVLLVTSAGRAFKVDVLPLPVLPEQAGTVSLRGGM 1036

Query: 589  AIQLLIDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            +   L+ L   + +V       T +    L + + +G   +                + +
Sbjct: 1037 SAAELVPLEPGESVVGLAPLGPTAEGSPGLALGTRQGVVKVCAPD--WPVRSDEFEVIGL 1094

Query: 645  SSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISD-- 699
               +++     +T   + +A +     LL F    +     +G G+   +  DG      
Sbjct: 1095 RDGDEVVGATWLTDGAESLAFLTSAASLLRFPAGTVRPQGLKGGGMAGVALPDGAQVVYF 1154

Query: 700  --VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
              V       G   + ++  +  +           R   G    +     +   ++
Sbjct: 1155 GAVRTDDPQHGEPMVVTSTGATVKVTPFAAYPAKGRATGGVRAQRFLKGETDVVVA 1210



 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 90/157 (57%), Gaps = 13/157 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L   + + YL YA S I  RA+PD RDG KPVHRRI++AM E G     A  KS
Sbjct: 20  RVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILYAMYESGFRPDRAHVKS 79

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY---- 131
           AR+VG+V+G+ HPHGD ++YD++VR+AQ F    PLI G GNFG+ D D  AA RY    
Sbjct: 80  ARVVGDVMGRYHPHGDTAIYDAMVRMAQDFSLNVPLIDGHGNFGSPD-DGPAAARYCVTG 138

Query: 132 -TEARMT-----QVAELI-LQGVDEDAVDF-RDTYNE 160
            T  R+      ++ EL+ L    E  VDF     + 
Sbjct: 139 DTRIRLADGSSPRIGELVDLAPDSEADVDFEVLDKDG 175


>gi|3411104|gb|AAC31151.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411106|gb|AAC31152.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 117/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|149370480|ref|ZP_01890169.1| DNA topoisomerase IV subunit A [unidentified eubacterium SCB49]
 gi|149356031|gb|EDM44588.1| DNA topoisomerase IV subunit A [unidentified eubacterium SCB49]
          Length = 896

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 144/733 (19%), Positives = 282/733 (38%), Gaps = 103/733 (14%)

Query: 2   GVDNISNSNTLVEENVKAVS----LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
              N  + +    ++V+       +     E +L YA   I ERA+P + DGFKPV RRI
Sbjct: 15  QDSNNQDFDNDEMDHVEETETITRVTGMYREWFLDYASYVILERAVPAIEDGFKPVQRRI 74

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +H+M ++       + K A IVG  + + HPHGD S+ D++V++ Q    +  LI  QGN
Sbjct: 75  MHSMKDL---DDGRYNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGN 126

Query: 118 FGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           +GNI  GD AAA RY EAR+++    ++   +     ++ +Y+    EP+  P  FP LL
Sbjct: 127 WGNILTGDRAAASRYIEARISKFGLDVVY--NPKITKWQASYDGRRKEPINLPVMFPLLL 184

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
           A G  GIAVG++T +  HN  E+ +A++  +            + + PDFPTGG++  + 
Sbjct: 185 AQGAEGIAVGLSTKVLPHNFLELIDASVKYLQGK--------RFTLFPDFPTGGMVDVTD 236

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
                 Y  G  G ++++R  + +       +V+ EIP+      LI+ I +    K   
Sbjct: 237 ------YNDGLRGGKIKSRARILQ--HDKNTLVIREIPFGTNTGSLIDSILKA-NDKGKI 287

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            ++ I D +A DV I+       L PD  +++++  ++ ET       V+   + P  + 
Sbjct: 288 KIKKIEDNTAADVEIL-IHIAAGLSPDKTIDALYAFTNCETSISPLACVIEDNK-PLFVG 345

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIR------ 408
           +  +LK        +L      ++   + +     L+ + I      +I           
Sbjct: 346 VSEMLKRSTDRTVFLLKSELEIQLNEFEEQWHYASLERIFIENRIYRDIEEEETWEGVIT 405

Query: 409 --NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
             ++         + ++TE  +  +  +R++ + K +  + + ++D L     ++   L 
Sbjct: 406 AIDKGLKPHTSHLKRAVTEEDIVRLTEIRIKRISKFDIDKAQQKIDALEDSIAEVKHHLE 465

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +              +++ + +  +       F ++  +        +        + ++
Sbjct: 466 N---LITYAINYFTRLRKDYGEGKERKSEIKVFDDIIASKVVIRNTKLYVNREEGFIGTS 522

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
                                             D I+  + DGK       +       
Sbjct: 523 LKRDE---------------------YVTDCSDIDDIIAFTKDGKMMVTKVDSKTFIGKD 561

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES--------EIIANTRKG 638
              +   +    ++  +   +Y    K    +          +        ++ A T+  
Sbjct: 562 IIHV--AVFKKKDKRTIYNMIYKDGPKG--AT---YIKRFAVTSVTRDREYDMTAGTKGS 614

Query: 639 KTF---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRL--- 689
           K +      + E ++  V+      V       K L + +D   I    RG KG  +   
Sbjct: 615 KVYYFTANPNGEAELVTVLLRQTGSV-------KKLKWDLDFSDILVKGRGSKGNIVTKY 667

Query: 690 ----QSYKDGGIS 698
                  K+ G+S
Sbjct: 668 PLKRIELKEKGLS 680


>gi|297242301|gb|ADI24823.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 84/177 (47%), Positives = 126/177 (71%), Gaps = 1/177 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           +KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|297242241|gb|ADI24793.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242247|gb|ADI24796.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242279|gb|ADI24812.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 84/177 (47%), Positives = 126/177 (71%), Gaps = 1/177 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           +KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|297242223|gb|ADI24784.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242295|gb|ADI24820.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 84/177 (47%), Positives = 126/177 (71%), Gaps = 1/177 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           +KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|308199035|dbj|BAJ22652.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199041|dbj|BAJ22655.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 158

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 88/156 (56%), Positives = 117/156 (75%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQ
Sbjct: 1   RILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           GNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNL
Sbjct: 61  GNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNL 120

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           L NG+SGIAVGMAT+IP H++ E+ +  L L+D+ +
Sbjct: 121 LLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKD 156


>gi|297242273|gb|ADI24809.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242291|gb|ADI24818.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 125/176 (71%), Gaps = 1/176 (0%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYT
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 61

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 122 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|297242251|gb|ADI24798.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 125/176 (71%), Gaps = 1/176 (0%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYT
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 61

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 122 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|42527621|ref|NP_972719.1| DNA topoisomerase IV subunit A [Treponema denticola ATCC 35405]
 gi|41818449|gb|AAS12638.1| topoisomerase IV, A subunit, putative [Treponema denticola ATCC
           35405]
          Length = 703

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 147/613 (23%), Positives = 247/613 (40%), Gaps = 45/613 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +     + +L YA   I++RAIPDL DG KPV RRI+H++ EM       F K A ++G 
Sbjct: 4   IESLFNKNFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEM---DDGKFHKVANVIGH 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + K HPHGD S+ ++LV LA     +   I  QGNFGNI  GD A+A RY E R+ + A
Sbjct: 61  CM-KYHPHGDASIGNALVVLA----SKELFIDTQGNFGNIFTGDEASAPRYIECRVNEFA 115

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + I    +    D+  +Y+  + EP+ F +K P +LA G  GIAVGM+T I  HN+ EI 
Sbjct: 116 KTIFY--NPHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEII 173

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA  A +            + + PDFPTGG+I  S       Y  G G   VRA+    +
Sbjct: 174 EAEKAFLSGK--------SFALFPDFPTGGLIDVSE------YEDGLGKVLVRAKLDTSD 219

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  IV+ E+P+      +I  I     A ++  + +I D + E+V I L       
Sbjct: 220 EK----RIVIRELPFGSTTESMINSIEAASKAGKVK-ISEISDYTGENVEIELKLPRGVY 274

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D++ ++++  ++ E   P    ++    +P  + +  I+K       ++L     +  
Sbjct: 275 SADVV-DALYAFTECEQSIPC-NLLVIKDNLPVQITVTDIIKYHAKQLMQILKDELEYER 332

Query: 381 QAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------FSLTENQVDA 430
             +  R+ +   + + I      +I  +   E     V+             +TE+ VD 
Sbjct: 333 AMLTERLHLRTLERIFIEERIYKKIETMKTAEGVINAVIKGFVPFKKELIRDVTEDDVDK 392

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV--KEIFSK 488
           +L + +R +   +  + + E+  +    ++I  LL + K     +   I      E F +
Sbjct: 393 LLKIPIRRISLYDINKNREEVREINNRLKEIAKLLKNLKGYAISVLDGIAAKLPAEEFKR 452

Query: 489 STDL-GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
            T++ G  +    E    D A            +V         S       L       
Sbjct: 453 KTEITGFTKVDVKEAVTRDTALRYDEETGYLGTSVTTGKDILRVSPYDRIFVLRKSGVYT 512

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
              +   +   T       +   +   +    +        A      +           
Sbjct: 513 VMDVPDRVFVDTGMWYCGFAEKEELSKVLFTVIYRDSKTKYAYIKRARVEGYILNRDYLF 572

Query: 608 YDSTCKLLVVSSK 620
                ++L VS+K
Sbjct: 573 APDNTEVLFVSTK 585


>gi|78771376|gb|ABB51163.1| GyrA [Escherichia coli]
          Length = 128

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 72/122 (59%), Positives = 95/122 (77%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKS
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYVTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 136 MT 137
           + 
Sbjct: 127 LA 128


>gi|9081893|gb|AAF82629.1| topoisomerase II subunit A [Staphylococcus simulans]
          Length = 143

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 111/141 (78%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 1   PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 61  YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 120

Query: 191 IPSHNVQEICEAALALIDNPE 211
           IP HN+ E+ +  L+L  NP+
Sbjct: 121 IPPHNLTEVIDGVLSLSKNPD 141


>gi|3411110|gb|AAC31154.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411112|gb|AAC31155.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411114|gb|AAC31156.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 116/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDYSVYGAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|12585585|gb|AAG49418.1| gyrase [Staphylococcus hominis subsp. novobiosepticus]
          Length = 126

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 69/125 (55%), Positives = 95/125 (76%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKS
Sbjct: 1   RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+
Sbjct: 61  ARIVGDVMGKYHPHGDFSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 136 MTQVA 140
           MT++ 
Sbjct: 121 MTKIT 125


>gi|196230801|ref|ZP_03129662.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
 gi|196225142|gb|EDY19651.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
          Length = 745

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 146/605 (24%), Positives = 242/605 (40%), Gaps = 68/605 (11%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +   L  +    +L YA   I +RA+P + DG KPV RR++H + +M       F K A 
Sbjct: 68  EQAPLAVSYRNWFLEYASYVILDRAVPHIDDGLKPVQRRVLHTLWDM---DDGRFHKVAN 124

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARM 136
           +VG  + KLHPHGD S+  +LV + Q    R  LI  QGN+GN + GD+AAA RY EAR+
Sbjct: 125 VVGATM-KLHPHGDASIEAALVAIGQ----RGWLIEPQGNYGNTLTGDAAAAARYIEARL 179

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A  +L   +     ++ +Y+    EPV  P+KFP +L  G  GIAVG++T I  HN 
Sbjct: 180 TPFARDVL--FNPKTTVWQQSYDGRTKEPVTLPAKFPIVLLEGAEGIAVGLSTKILPHNF 237

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            ++C AA+  +      I         PDFPTGG    +       Y  G  G +V+ R 
Sbjct: 238 NDLCRAAINHLQGKTFRIL--------PDFPTGGTGDFTD------YNDGERGGKVKVRA 283

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE  +   CI  TE+PY V    LIE I     AK    ++ + D +A  V I+    
Sbjct: 284 RIEEHSKSVLCI--TELPYGVTTESLIESI-LAANAKGKIKIKHVDDNTASKVEIL-VHL 339

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-----RVPQVMPLDGILKEWLAHRREV 371
                PD +++ +++ +  + +      V+          PQ M +  ILK  +   +E+
Sbjct: 340 PPGSQPDKVVQQLYVFTSCQVQLNPAACVIVRDPETGEDRPQFMGVRDILKASVDATKEL 399

Query: 372 LFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVM--------VSRF 421
           L +    ++  ++++     L+ + I       I      E   + +           R 
Sbjct: 400 LKQELEIKLGELEQQWHWDSLERIFIEERIYRRIEKSQTWESVLEEIRTGLKPFIGNLRR 459

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            +TE  +  +  +R++ +     +Q    L  +    ++    L +           ++E
Sbjct: 460 EVTEEDIVRLTEIRIKRISAYNRFQADEALKKIEEAIKETKHHLKNLVAYAVDWFERLQE 519

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
                 K     +RRTT+ E+              +   + V+S    +   +       
Sbjct: 520 ------KYGKGVKRRTTYDEI-------------AQIDASAVVSANQRLYVNREDGFIGL 560

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
                E             D +L +  DG        + +        I L         
Sbjct: 561 NWRQHE-----FVTECSILDSVLTIMRDGSLKVTKVADKVFMGRKIIHIGLWPKDGDMNF 615

Query: 602 IVTAF 606
               +
Sbjct: 616 YTMVY 620


>gi|297242239|gb|ADI24792.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242285|gb|ADI24815.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/178 (47%), Positives = 126/178 (70%), Gaps = 1/178 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +K SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKISARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242217|gb|ADI24781.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/178 (47%), Positives = 126/178 (70%), Gaps = 1/178 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +K SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKISARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|86279131|gb|ABC88665.1| DNA gyrase A [Ornithobacterium rhinotracheale]
          Length = 136

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/136 (55%), Positives = 104/136 (76%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++ M+EMGL     +KKSAR+VGEV+GK HPHGD SVYD++VR+AQ +  RY L+
Sbjct: 1   VHRRVLYGMNEMGLLSNRGYKKSARVVGEVMGKFHPHGDSSVYDTMVRMAQDWSMRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG++DGD  AA RYTEARM +++E +L  +D++ VD +  +++   EP V P++ 
Sbjct: 61  DGQGNFGSVDGDPPAAMRYTEARMQKISEEMLADIDKETVDQKLNFDDTLYEPTVLPTRI 120

Query: 173 PNLLANGTSGIAVGMA 188
           PNLL NG +GIAVGMA
Sbjct: 121 PNLLVNGAAGIAVGMA 136


>gi|297242283|gb|ADI24814.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242287|gb|ADI24816.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 126/176 (71%), Gaps = 1/176 (0%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G + D  S AA RYT
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGASDDPKSFAAMRYT 61

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 122 PHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|111114858|ref|YP_709476.1| DNA topoisomerase IV subunit A [Borrelia afzelii PKo]
 gi|216264054|ref|ZP_03436048.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           afzelii ACA-1]
 gi|110890132|gb|ABH01300.1| DNA topoisomerase IV [Borrelia afzelii PKo]
 gi|215980098|gb|EEC20920.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           afzelii ACA-1]
          Length = 626

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 138/646 (21%), Positives = 257/646 (39%), Gaps = 55/646 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTLLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      I         PDFPTGGI+  +       Y  G G   VRA+   
Sbjct: 171 ILNAVKSELLGETYDIY--------PDFPTGGIVDVNE------YADGNGKVLVRAKIET 216

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +       IV+ E+P+      LI  I + I    I +     ++   +   +     R
Sbjct: 217 IDEKT----IVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +L   R P V  +  ++K    H ++VL      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLL-SERYPVVYTIKDLIKFHADHLQKVLKMELEL 329

Query: 379 RMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           +   I  ++     + + I       +  I + E+    ++       E+    +L   +
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKKIYKLLETISKEENIVSIILSEVLRCKESFSREVLKEDI 389

Query: 437 RSL-----RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
            +L     RK+  + I     ++    +++  + ++           I  +   +SK   
Sbjct: 390 ENLLKIPIRKISLFDIDKNSKDIKILNKELKIINSNISSIKEYSINFIDLLLAKYSKEHQ 449

Query: 492 LGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL---SALHFKE 547
                +    +  +       +  +      V  S         +   D       +   
Sbjct: 450 RKTEISLIKSKNVKEIATKNMKVYLNLAEGFVGTSLFDGEFIGNASYYDKVLVFRKNSYV 509

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN-QDIVTAF 606
             +++        +  +L+     +       +   +           ++    D V  F
Sbjct: 510 LKNIEDKAFIDKKNICVLVYDINNSKEQIFSIIYLNKLDNFYYVKRFKIDKFIADKVYEF 569

Query: 607 VYDSTCKLL---------VVSSKGNAFIVEESEIIANTRK--GKTF 641
           + D+   +            ++K     +E +  +  +R   GK  
Sbjct: 570 LGDNDEFVDFSLSPKFVEFSTNKDIIKRIEIANFMVKSRSSIGKRI 615


>gi|188994336|ref|YP_001928588.1| DNA topoisomerase IV subunit A [Porphyromonas gingivalis ATCC
           33277]
 gi|188594016|dbj|BAG32991.1| DNA topoisomerase IV A subunit [Porphyromonas gingivalis ATCC
           33277]
          Length = 898

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 135/581 (23%), Positives = 233/581 (40%), Gaps = 41/581 (7%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
              YL YA   I ERA+P + DG KPV RRI++ M            K A++ G+ +  L
Sbjct: 44  RNWYLDYASYVILERAVPHIEDGLKPVQRRILYTMH--HWFDNGRMNKVAKVTGQTMA-L 100

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q     Y LI  QGN+GNI  GD AAA RY EA+++ +A+  L 
Sbjct: 101 HPHGDASINDALVQLGQK---GY-LIETQGNWGNILTGDEAAAGRYIEAKLSALAQETL- 155

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             ++    ++ +Y+  + EPV  P KFP LLA GT GIAVG+ + +  HN+ E+  A +A
Sbjct: 156 -FNDKITHWKRSYDGSEDEPVALPVKFPLLLAQGTEGIAVGLNSKVLPHNLGELLMACIA 214

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +      +         PDFPTGG++  SR      Y  GR G ++++R  + ++   +
Sbjct: 215 HLRGESFDLY--------PDFPTGGMMDASR------YNDGRRGGQIKSRAKIRKLDNRT 260

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I  TE+P     S LIE I +    K    ++ I D +A +  I        +  D  
Sbjct: 261 LSI--TELPCGKTTSSLIESILKA-NEKGKIKIKRIDDMTAAEADI-RIHLAAGVSSDKT 316

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +D E         + M   P  + +  +L+      RE+L +  + R++    
Sbjct: 317 IDALYAFTDCEVS-QSPNACVIMDDKPVFLGVTDLLRYSAERTRELLKQELTIRLE---- 371

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
             E  +  L A L    I   I  + + +         +E      +  RL         
Sbjct: 372 --EKREQYLAASLERIFIEERIYKDREFEEAE------SEQDALMHVEARLEPYAHRFIR 423

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
            +  +    L E      L  +  +    +    +++ E+     ++      + E    
Sbjct: 424 PVTYDDLKKLLEIRMARILRFNLPKHEAMMLQLEKDIAELEKNIREITAYTIRWFEYLHE 483

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
             A+      +    + + + +    + K +               +   +    D +++
Sbjct: 484 HYASRFPRRTQLIGFSTIQATKVAEANAKLYINREEGFIGMGLKGDEFVCNCSDLDDVII 543

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
              DG                        + N  + I    
Sbjct: 544 FFRDGTYLITKVEEKKFIGNREVIYIDRFERNDKRTIYNVI 584


>gi|145633278|ref|ZP_01789009.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
 gi|144986124|gb|EDJ92714.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
          Length = 620

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 122/552 (22%), Positives = 215/552 (38%), Gaps = 69/552 (12%)

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           ++E+PYQV K++L+EKIAELI  K+I  + +I D S ++   +     R    ++++  +
Sbjct: 1   MSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRIEIDIKRDAVGEVVLNHL 60

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           + L+ M+  F +NM  L     P++  L  I++ ++ HRREV+ RRS F ++    R  I
Sbjct: 61  YSLTQMQVTFGINMVALDH-GQPRLFNLKEIIEAFVLHRREVVTRRSIFELRKARERTHI 119

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKP---------------------------------- 415
           L+GL +A  NIDE+IAIIRN    +                                   
Sbjct: 120 LEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWALHSDIINLLDVSARPDDLEENLG 179

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           +   ++ L+  QV+AIL LRL  L  +   ++  E   LL +   +  +L+S ++    I
Sbjct: 180 IQGEQYYLSPAQVNAILELRLHRLTGIAFEEVVKEYKELLVKIADLLHILSSAERLMEVI 239

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E+ EVK  F           +         A     +       V         + + 
Sbjct: 240 REELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRR 299

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLL 593
                SA   KE D ++  L A+T D IL  S+ G+ Y L    L        G  I  +
Sbjct: 300 GGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRGARGRPIVNI 359

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + L  N+ I        Y+    +++ ++ G    +  +E       G   L +  E+++
Sbjct: 360 LPLQENERITAILPVSAYEEDKFVIMATADGIVKKIALTEFSRPRSNGIIALNLRDEDEL 419

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--------------- 693
             V    G + + +     +++ F+ + +  M R   GVR                    
Sbjct: 420 IGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIE 479

Query: 694 -----------DGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                      D  I  V+   + +     + +    Y +           R   G +  
Sbjct: 480 EISDDNAETALDLNIDKVVSLVVPKSEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISI 539

Query: 742 KGFPRSGKFLSS 753
           K   R+GK +++
Sbjct: 540 KVSERNGKVVAA 551



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 47/125 (37%), Gaps = 6/125 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V  S   +L  +  G     + SE    +R  K  + +       K+    
Sbjct: 493 NIDKVVSLVVPKSEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 552

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTW 711
           +V   D + ++ +   L+   + ++  + R  +GVRL    D   +  +      +    
Sbjct: 553 QVEETDQIMLITDAGTLVRTRVSEVGIVGRNTQGVRLIRTADDEHVVSLERVCDADEEDS 612

Query: 712 IDSAG 716
           ++ +G
Sbjct: 613 LEESG 617


>gi|34541272|ref|NP_905751.1| DNA topoisomerase IV subunit A [Porphyromonas gingivalis W83]
 gi|34397588|gb|AAQ66650.1| DNA topoisomerase IV, A subunit, putative [Porphyromonas gingivalis
           W83]
          Length = 898

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 136/581 (23%), Positives = 233/581 (40%), Gaps = 41/581 (7%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
              YL YA   I ERA+P + DG KPV RRI++ M            K A++ G+ +  L
Sbjct: 44  RNWYLDYASYVILERAVPHIEDGLKPVQRRILYTMH--HWFDNGRMNKVAKVTGQTMA-L 100

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q     Y LI  QGN+GNI  GD AAA RY EA+++ +A+  L 
Sbjct: 101 HPHGDASINDALVQLGQK---GY-LIETQGNWGNILTGDEAAAGRYIEAKLSALAQETL- 155

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             ++    ++ +Y+  + EPV  P KFP LLA GT GIAVG+ + +  HN+ E+  A +A
Sbjct: 156 -FNDKITHWKRSYDGSEDEPVALPVKFPLLLAQGTEGIAVGLNSKVLPHNLGELLMACIA 214

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +      +         PDFPTGG++  SR      Y  GR G ++++R  + ++   +
Sbjct: 215 HLRGESFDLY--------PDFPTGGMMDASR------YNDGRRGGQIKSRAKIRKLDNRT 260

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I  TE+P     S LIE I +    K    ++ I D +A +  I        +  D  
Sbjct: 261 LSI--TELPCGKTTSSLIESILKA-NEKGKIKIKRIDDMTAAEADI-RIHLAAGVSSDKT 316

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +D E         + M   P  + +  +L+      RE+L +  + R++    
Sbjct: 317 IDALYAFTDCEVS-QSPNACVIMDDKPVFLGVTDLLRYSAERTRELLKQELTIRLE---- 371

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
             E  +  L A L    I   I  + + +         +E      +  RL         
Sbjct: 372 --EKREQYLAASLERIFIEERIYKDREFEEAE------SEQDALMHVEARLEPYAHRFIR 423

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
            I  +    L E      L  +  +    +    +++ E+     ++      + E    
Sbjct: 424 PITYDDLKKLLEIRMARILRFNLPKHEAMMLQLEKDIAELEKNIREITAYTIRWFEYLHE 483

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
             A+      +    + + + +    + K +               +   +    D +++
Sbjct: 484 HYASRFPRRTQLIGFSTIQATKVAEANAKLYINREEGFIGMGLKGDEFVCNCSDLDDVII 543

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
              DG                        + N  + I    
Sbjct: 544 FFRDGTYLITKVEEKKFIGNREVIYIDRFERNDKRTIYNVI 584


>gi|15721889|dbj|BAB68394.1| DNA gyrase subunit A [Salmonella paratyphi]
          Length = 128

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/128 (57%), Positives = 100/128 (78%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 168 FPSKFPNL 175
            P+K PNL
Sbjct: 121 MPTKIPNL 128


>gi|3411108|gb|AAC31153.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 116/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|313674754|ref|YP_004052750.1| DNA topoisomerase (ATP-hydrolyzing) [Marivirga tractuosa DSM 4126]
 gi|312941452|gb|ADR20642.1| DNA topoisomerase (ATP-hydrolyzing) [Marivirga tractuosa DSM 4126]
          Length = 867

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 136/516 (26%), Positives = 238/516 (46%), Gaps = 45/516 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++    E  +L YA   I ERA+P   DGFKPV RRI+HAM EM       F K A I+
Sbjct: 26  IAVSGMYENWFLDYASYVILERAVPANEDGFKPVQRRIMHAMKEM---DDGRFNKVANII 82

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G+ + + HPHGD S+ DS+V + Q    +  LI  QGN+G+I  GDS+AA RY EAR+++
Sbjct: 83  GQTM-QYHPHGDASIGDSIVNMGQ----KDILIETQGNWGDIRTGDSSAAPRYIEARLSK 137

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  ++   +    +++ +Y+    EPV  P KFP LLA G  GIAVG++T I  HN  E
Sbjct: 138 FALDVV--FNPQTTEWQLSYDGRKKEPVTLPVKFPLLLAQGVEGIAVGLSTKILPHNFCE 195

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A + ++ N +I I         PDFPTGG+   S       Y  G  G ++R R  +
Sbjct: 196 LIKACIDVLKNKKIEIY--------PDFPTGGMADFSE------YNQGLRGGKIRVRAKI 241

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE  +    +++  IP+    + LIE I +    K    ++ + D +A+DV I       
Sbjct: 242 EEGEK--RTLLIKNIPFGTTTTGLIESIIKA-NDKGKIKVKKVVDNTAKDVEIE-VQLAA 297

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              PD+ +++++  +D E     N  V+   + P  +P++ ILK+ +     +L R    
Sbjct: 298 GQSPDITIDALYAFTDCEISISPNACVIIEDK-PIFLPVNEILKKNVEDTLGLLERELEI 356

Query: 379 RMQAIDRRVEILKGLLIA-----------YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           R   +  ++       I                + ++  I    +P         +T++ 
Sbjct: 357 RRGELMEKILFSSLEKIFIENRIYRNIEECETWEAVLETIDKGLEPFKPQF-YREITQDD 415

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  +  ++++ + K ++++    +  L  E  +++  L +  +         + + E + 
Sbjct: 416 IIRLTEIKIKRISKFDKFKADELMRKLEDELAQVEHHLKNLTE---YAIDYYKGLLEKYG 472

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           K  +      +F  +     A   Q +        +
Sbjct: 473 KGKERKTEIKSFDNIQAHTVAANNQKLFVNRQEGFI 508


>gi|219685308|ref|ZP_03540127.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii Far04]
 gi|219673081|gb|EED30101.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii Far04]
          Length = 626

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 140/646 (21%), Positives = 254/646 (39%), Gaps = 55/646 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRSILKDNFLQYSSYVIKDRAIASIVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN + GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      I         PDFPTGGI+  +       Y  G G   VRA+   
Sbjct: 171 ILSAVKSELLGETYDIY--------PDFPTGGIVDVNE------YADGNGKVLVRAKIET 216

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +       IV+ E+P+      LI  I + I    I +     ++   +   +     R
Sbjct: 217 IDEKT----IVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +L   R P V  +  ++K    H +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLL-SERYPVVYTIKDLIKFHADHLQKILKMELEL 329

Query: 379 RMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           +   I  ++     + + I       +  I +  +    ++       E+    +L   +
Sbjct: 330 QRNKIFEKIFYKTLEQIFIEKKIYKLLETISKEGNIVSIILSEVLKYKESFSREVLKEDV 389

Query: 437 RSL-----RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
            +L     RK+  + I     ++    +++ S+ ++           I  +   +SK   
Sbjct: 390 ENLLKIPIRKISLFDIDKNSKDIKILNKELKSVNSNISSIRGYSINFIDLLLSKYSKYHQ 449

Query: 492 LGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                +    +  +       +  +      V  S         +   D   +  K    
Sbjct: 450 RKTEISLIKSKNVKEIATKNMKVYLNLAEGFVGTSLFDGEFIGNASYYDKILVFRKNSYV 509

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD- 609
           LK        D+  + +                  +       I        +T  VY+ 
Sbjct: 510 LKNIEDKAFIDKKNICALVYDINNSKEQIFSIIYLNKLDNFYYIKRFKIDKFITDKVYEF 569

Query: 610 --STCKLL----------VVSSKGNAFIVEESEIIANTRK--GKTF 641
                + +            ++K     +E +  +  +R   GK  
Sbjct: 570 LGENDEFVDFSLNPQFVEFSTNKNIVKRIEIANFMVKSRSSIGKRI 615


>gi|117654335|gb|ABK55598.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 198

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 104/199 (52%), Positives = 147/199 (73%), Gaps = 1/199 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAEL 289
           TE+P QV K++LIE IA+L
Sbjct: 180 TELPXQVNKAKLIEXIADL 198


>gi|219923480|emb|CAQ86602.1| gyrase subunit A [Klebsiella oxytoca]
          Length = 139

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/139 (57%), Positives = 108/139 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATSIPSHNVQEICEA 202
           AVGMAT+IP HN+ E+   
Sbjct: 121 AVGMATNIPPHNLTEVING 139


>gi|117654339|gb|ABK55600.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 201

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 105/202 (51%), Positives = 148/202 (73%), Gaps = 1/202 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I+ L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIA 292
           TE+PYQV  ++LIEKIA+L+  
Sbjct: 180 TELPYQVNXAKLIEKIADLVRD 201


>gi|51598298|ref|YP_072486.1| DNA topoisomerase IV subunit A [Borrelia garinii PBi]
 gi|51572869|gb|AAU06894.1| DNA topoisomerase IV [Borrelia garinii PBi]
          Length = 626

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 140/646 (21%), Positives = 255/646 (39%), Gaps = 55/646 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRSVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      I         PDFPTGGI+  +       Y  G G   VRA+   
Sbjct: 171 ILSAVKSELLGETYDIY--------PDFPTGGIVDVNE------YADGNGKILVRAKIET 216

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +       IV+ E+P+      LI  I + I    I +     ++   +   +     R
Sbjct: 217 LDEKT----IVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +L   R P V  +  ++K    H +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLL-SERYPVVYTIKDLIKFHADHLQKILKMELEL 329

Query: 379 RMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           +   I  ++     + + I       +  I + E+    ++       E+    +L   +
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKKIYKLLETISKEENIVSIILSEVLKYKESFSREVLKEDV 389

Query: 437 RSL-----RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
            +L     RK+  + I     ++    +++ S+ ++           I  +   +SK   
Sbjct: 390 ENLLKIPIRKISLFDIDKNFKDIKILNKELKSVNSNISSIRGYSINFIDLLLAKYSKDHQ 449

Query: 492 LGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                +    +  +       +  +      V  S         +   D   +  +    
Sbjct: 450 RKTEISLIKSKNVKEIATKNMKVYLNLAEGFVGTSLFDGEFIGNASYYDKILIFRENSYV 509

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD- 609
           LK        D+  + +                  +       I        +T  VY+ 
Sbjct: 510 LKNIEDKAFIDKKNICALVYDINNSKEQIFSIIYLNKLDKFYYIKRFKIDKFITDKVYEF 569

Query: 610 --STCKLL----------VVSSKGNAFIVEESEIIANTRK--GKTF 641
                + +            ++K     +E +  +  +R   GK  
Sbjct: 570 LGENDEFVDFSLNPKFVEFSTNKDIVKRIEIANFMVKSRSSIGKRI 615


>gi|224534930|ref|ZP_03675499.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           spielmanii A14S]
 gi|224513870|gb|EEF84195.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           spielmanii A14S]
          Length = 626

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 142/646 (21%), Positives = 256/646 (39%), Gaps = 55/646 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      I         PDFPTGGI+  +       Y  G G   VRA+   
Sbjct: 171 ILNAVRSELLGETYDIY--------PDFPTGGIVDVNE------YADGNGKVLVRAKIET 216

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +       IV+ E+P+      LI  I + I    I +     ++   +   +     R
Sbjct: 217 IDEKT----IVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +L   R P V  +  ++K   AH ++VL      
Sbjct: 271 GVYASEVIEKLYHYTNCQVSISVNLLLL-SERYPVVYTIKDLIKFHAAHLQKVLKMELEL 329

Query: 379 RMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           +   I  ++     + + I       +  I + E+    ++       E+    +L   +
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKKIYKFLETISKEENIVSIILSEILRCKESFSREVLKEDV 389

Query: 437 RSL-----RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
            +L     RK+  + I     ++    +++ ++ ++           I  +   +SK   
Sbjct: 390 ENLLKIPIRKISLFDIDKNSKDIKILNKELRTINSNISSIKGYSINFIDLLLAKYSKDHQ 449

Query: 492 LGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                +    +  +       +  +      V  S         +   D   +  K    
Sbjct: 450 RKTEISLIKSKNVKEIATKNMKVYLNLAEGFVGTSLFDGEFIGSASYYDKVLVFRKNNYV 509

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD- 609
           LK        D+  + +                  +       +        +T  VY+ 
Sbjct: 510 LKNIEDKAFIDKKNICALVYDINNSKEQIFSIIYLNKLDNFYYVKRFKIDKFITDKVYEF 569

Query: 610 --STCKLL----------VVSSKGNAFIVEESEIIANTRK--GKTF 641
                + +            ++K     +E +  I  +R   GK  
Sbjct: 570 LGENDEFVDFSLSPKFVEFSTNKDIIKRIEITNFIVKSRSSIGKRI 615


>gi|75763035|ref|ZP_00742825.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489482|gb|EAO52908.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 531

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 149/521 (28%), Positives = 275/521 (52%), Gaps = 20/521 (3%)

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           G  AAA R TEA ++ +A  +L+ +D++ V+F  T N+   EPVV P+ FPNLL NG++G
Sbjct: 2   GTQAAAMRNTEAPLSPIASELLRDLDKETVEFVSTLNDTSEEPVVLPAAFPNLLVNGSTG 61

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           I+ G AT IP H++ E+ +A +  ID P  +++ LL  + GPDFPTGGII    + I ++
Sbjct: 62  ISAGYATEIPPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQG-IDGIKKA 120

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G+G   +R +  +E V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++R
Sbjct: 121 YETGKGKIIIRGKAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVR 180

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DE+      ++    + ++ + ++  ++  +D++  +  NM  ++  R P +M L  IL 
Sbjct: 181 DETDRTGLRIVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAIN-NRRPTLMTLPKILD 239

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--- 419
            ++ H++EV+ RRS + ++  + R  I++GL  A   +D++I  IR     +    +   
Sbjct: 240 AYIGHQKEVITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSA 299

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F  TE Q +AI++L+L  L   +   ++ E D L  +  ++ S+L S K+    I  ++
Sbjct: 300 KFGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKILELQSILQSEKRLLQVIKTDL 359

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHS 537
           + VK+ +S        R    E    +     + MI +E + V ++  G+++    +SH+
Sbjct: 360 KRVKKTYSDD------RRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHN 413

Query: 538 V-DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--EAIQLLI 594
             +      KEGD L      +TT+ +LL ++ G    LP   +   R     + +  ++
Sbjct: 414 ASNGKDFGMKEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQHVANIV 473

Query: 595 DLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEI 631
            L+ ++ I+   V     +    ++ V+  G     E ++ 
Sbjct: 474 SLDRDETIIWVTVVPNFEEEKRFIVFVTRNGMIKKTELNQY 514



 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/140 (9%), Positives = 36/140 (25%), Gaps = 29/140 (20%)

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVV 664
            +      ++ V+ +G            N   GK F  +   + +           V + 
Sbjct: 387 VMIPQEDVIVTVTKEGYVKRTGWR--SHNASNGKDF-GMKEGDILLERFDTNTTETVLLF 443

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG--ISDVICFKICEGLTWIDS-------- 714
                 +   + ++P+           +KD G  +++++     E + W+          
Sbjct: 444 TSKGNYIYLPVYEMPD---------IRWKDLGQHVANIVSLDRDETIIWVTVVPNFEEEK 494

Query: 715 ------AGRSYNRSENDLLG 728
                       +       
Sbjct: 495 RFIVFVTRNGMIKKTELNQY 514


>gi|317471525|ref|ZP_07930876.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
 gi|316901020|gb|EFV22983.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
          Length = 651

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 142/630 (22%), Positives = 267/630 (42%), Gaps = 56/630 (8%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ++ VDF   ++E + EP V P + PNLL NG  GIAVGM TSIP HN+ E+ +A +A ++
Sbjct: 36  KNVVDFISNFDETEKEPEVLPVRVPNLLINGAEGIAVGMTTSIPPHNLGEVVDAMIAYLE 95

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW-- 266
           +  ++ E LL YI GPDFPTGG +V +++ I   Y  G G  ++R +   E   +     
Sbjct: 96  DESVANEDLLTYIQGPDFPTGG-LVVNKKDIKTIYTEGSGKLKLRGKVVFEPGKKRGEKD 154

Query: 267 CIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
            +V+TEIPY +      + +  +  L+ +K+   + DI +ES+++   ++    +  D +
Sbjct: 155 KLVITEIPYTMIGANIGKFLSDVVNLVESKKTTDIADISNESSKEGIRIVLELKKGTDIE 214

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            L   ++  + +E  F +NM  +     P+ + L  I+         ++ R+    +  +
Sbjct: 215 RLKNLLYKKTKLEDTFGVNMLAIVD-GRPETLSLRDIIAHHTEFHYGLVKRKYQTLLSKL 273

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------------VMVSRFS 422
             + E+ +GL+ A   ID II I+R     K                      +   + S
Sbjct: 274 YDQREVKEGLIKACDMIDLIIEILRGSKNLKEAKACLTKGEVGNIRFKSSESMIEACKLS 333

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            TE Q +AIL+LRL  L  LE   ++ E + ++A+  + + +L++       +  ++ ++
Sbjct: 334 FTEKQAEAILDLRLGKLIGLEILALREEYEEIVAKIAEYEDILHNPASMQRVMKQDLMKI 393

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ +        RRT   + + A            +   V      +  +          
Sbjct: 394 KKEY-----QRERRTVVEDGAEAVF-----EEEPLKEEQVYFVMDRFGYAKTFDKATYQR 443

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN-HN 599
                    K  +    TD+I + +  G  + +   ++     +  G  I  L + +  +
Sbjct: 444 NQENASRDYKYIVPCMNTDKICIFTDTGVMHQIKVLDIPAGKYKDKGTPIDNLGNYDSSD 503

Query: 600 QDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK-- 655
           + I+     ++     L   + +G   IV  +E    T++  +  K+S  + +  V    
Sbjct: 504 EAIIAVLAAEAMTHDSLFFATEQGMLKIVSGTEFQ-VTKRTVSATKLSDGDALLSVKPLK 562

Query: 656 -----VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
                +  D V +  +    L FS++++PE  +G  GVR        I         +G+
Sbjct: 563 TEGGLIKPDMVILETKEGVFLRFSLEEVPEKKKGAVGVRGIKLNKDDILLHTYLMEADGI 622

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           T +D       +  +     L KR   GS 
Sbjct: 623 TSMD----YKGKRLDFNKLKLAKRDTKGSK 648


>gi|117654337|gb|ABK55599.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 201

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 105/202 (51%), Positives = 148/202 (73%), Gaps = 1/202 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I+ L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKEXIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIA 292
           TE+PYQV  ++LIEKIA+L+  
Sbjct: 180 TELPYQVNXAKLIEKIADLVXD 201


>gi|312147811|gb|ADQ30470.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi JD1]
          Length = 626

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 142/649 (21%), Positives = 254/649 (39%), Gaps = 61/649 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      I         PDFPTGGI+  +       Y  G G   VRA+   
Sbjct: 171 ILNAVKSELLGESYDIY--------PDFPTGGIVDVNE------YADGNGKVLVRAKIET 216

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +       IV+ E+P+      LI  I + I    I +     ++   +   +     R
Sbjct: 217 IDEKT----IVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +L   R P V  +  ++K   AH +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLL-SERYPVVYTIKDLIKFHAAHLQKILKMELEL 329

Query: 379 RMQAIDRRVEILKGLLIAYLN----------IDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           +   I  ++       I               +E I  I   +  +        + +  V
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKKIYKLLETISKEENILSIILSEVLRHKESFSREVLKEDV 389

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +L + +R +   +  +   ++  L  E + I+S ++S           I  +   +SK
Sbjct: 390 ENLLKIPIRKISLFDIDKNSKDIKILNKELKSINSNISS---IRGYSINFIDLLLAKYSK 446

Query: 489 STDLGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +    +  +       +  +      V  S         +   D   +  + 
Sbjct: 447 EHQRKTEISLIKSKNVKEIATKNMKVYLNLAEGFVGTSLFDGEFIGNASYYDKILVFREN 506

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
              LK        D+  + +                  +       +        +T  V
Sbjct: 507 SYVLKNIEDKTFIDKKNVCALVYDINNSKEQIFSIIYFNRLDNFYYVKRFKIDKFITDKV 566

Query: 608 YD---STCKLL----------VVSSKGNAFIVEESEIIANTRK--GKTF 641
           Y+      + +            ++K     +E    +  +R   GK  
Sbjct: 567 YEFLGENDEFVDFSLNPEFVEFSTNKDIVKRIEIDNFMVKSRSSIGKRI 615


>gi|117654327|gb|ABK55594.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 203

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 106/203 (52%), Positives = 149/203 (73%), Gaps = 1/203 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAK 293
           TE+ YQV K++LIEKIA+L+  K
Sbjct: 180 TELXYQVNKAKLIEKIADLVXDK 202


>gi|224533950|ref|ZP_03674535.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi CA-11.2a]
 gi|225549759|ref|ZP_03770724.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 118a]
 gi|224512953|gb|EEF83319.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi CA-11.2a]
 gi|225369719|gb|EEG99167.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 118a]
          Length = 626

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 139/646 (21%), Positives = 255/646 (39%), Gaps = 55/646 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      I         PDFPTGGI+  +       Y  G G   VRA+   
Sbjct: 171 ILNAVKSELLGESYDIY--------PDFPTGGIVDVNE------YADGNGKVLVRAKIET 216

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +       IV+ E+P+      LI  I + I    I +     ++   +   +     R
Sbjct: 217 IDEKT----IVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +L   R P V  +  ++K   AH +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLL-SERYPVVYTIKDLIKFHAAHLQKILKMELEL 329

Query: 379 RMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           +   I  ++     + + I       +  I + E+    ++       E+    +L   +
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKKIYKLLETISKEENIVSIILSEVLRCKESFSREVLKEDV 389

Query: 437 RSL-----RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
            +L     RK+  + I     ++    +++ S+ ++           I  +   +SK   
Sbjct: 390 ENLLKIPIRKISLFDIDKNSKDIKILNKELKSINSNISSIRGYSINFIDLLLAKYSKEHQ 449

Query: 492 LGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
              + +    +  +       +  +         S         +   D   +  +    
Sbjct: 450 RKTKISLIKSKNVKEIATKNMKVYLNLAEGFAGTSLFDGEFIGNASYYDKILVFRENSYV 509

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD- 609
           LK        D+  + +                  +       +        +T  VY+ 
Sbjct: 510 LKNIEDKTFIDKKNVCALVYDINNSKEQIFSIIYFNRLDNFYYVKRFKIDKFITDKVYEF 569

Query: 610 --STCKLL----------VVSSKGNAFIVEESEIIANTRK--GKTF 641
                + +            ++K     +E    +  +R   GK  
Sbjct: 570 LGENDEFVDFSLNPEFVEFSTNKDIVKRIEIDNFMVKSRSSIGKRI 615


>gi|219684816|ref|ZP_03539758.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii PBr]
 gi|219671761|gb|EED28816.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii PBr]
          Length = 626

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 142/649 (21%), Positives = 256/649 (39%), Gaps = 61/649 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRSILKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN + GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      I         PDFPTGGI+  +       Y  G G   VRA+   
Sbjct: 171 ILSAVKSELLGETYDIY--------PDFPTGGIVDVNE------YADGNGKVLVRAKIET 216

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +       IV+ E+P+      LI  I + I    I +     ++   +   +     R
Sbjct: 217 IDEKT----IVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +L   R P V  +  ++K    H +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLL-SERYPVVYTIKDLIKFHADHLQKILKMELEL 329

Query: 379 RMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE--------NQV 428
           +   I  ++     + + I       +  I + E+    ++       E          V
Sbjct: 330 QRNKIFEKIFYKTLEQIFIEKKIYKLLETISKEENIVSIILSEVLKYKESFSREVFKEDV 389

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +L + +R +   +  +   ++  L  E + ++S ++S           I  +   +SK
Sbjct: 390 ENLLKIPIRKISLFDIDKNSKDVKILNKELKSVNSNISS---IRGYSINFIDLLLAKYSK 446

Query: 489 STDLGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +    +  +       +  +      V  S         +   D   +  K 
Sbjct: 447 DHQRKTEISLIKSKNVKEIATKNMKVYLNLAEGFVGTSLFDGEFIGNASYYDKILVFRKN 506

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
              LK        D+  + +                  +       I        +T  V
Sbjct: 507 SYVLKNIEDKAFIDKKNICALVYDINNSKEQIFSIIYLNKLDNFYYIKRFKIDKFITDKV 566

Query: 608 YD---STCKLL----------VVSSKGNAFIVEESEIIANTRK--GKTF 641
           Y+      + +            ++K     +E +  +  +R   GK  
Sbjct: 567 YEFLGENDEFVDFSLNPQFVEFSTNKDIVKRIEIANFMVKSRSSIGKRI 615


>gi|224531518|ref|ZP_03672150.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           valaisiana VS116]
 gi|224510983|gb|EEF81389.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           valaisiana VS116]
          Length = 626

 Score =  260 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 144/649 (22%), Positives = 254/649 (39%), Gaps = 61/649 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGGEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      I         PDFPTGGI+  +       Y  G G   VRA+   
Sbjct: 171 ILNAVKSELLGETYDIY--------PDFPTGGIVDVNE------YADGNGKVLVRAKIET 216

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +       IV+ E+P+      LI  I + I    I +     ++   +   +     R
Sbjct: 217 IDEKT----IVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +L   R P V  +  ++K   AH +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLL-SERYPVVYTIKDLIKFHAAHLQKILKMELEL 329

Query: 379 RMQAIDRRVEILKGLLIAYLN----------IDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           +   I  ++       I               +E I  I   +           + +  V
Sbjct: 330 QRSKILEKIFYKTLEQIFIEKKIYKLLETISKEENIVNIILSEVLSYKESFSREVFKEDV 389

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +L + +R +   +  +   ++  L  E + ++S ++S           I  +   +SK
Sbjct: 390 ENLLKIPIRKISLFDIDKNSKDIKILNKELKSVNSSISS---IRGYSINFIDLLLAKYSK 446

Query: 489 STDLGRRRTTFCEVS-RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +     S +       +  +      V  S  G      +   D   +  + 
Sbjct: 447 EHQRKTEISLIKSKSVKEIATKNMKVYLNLAEGFVGTSLFGGEFIGNASYYDKILIFREN 506

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
              LK        D+  + +                  +       +        +T  V
Sbjct: 507 SYVLKNIEDKAFIDKKNVCALVYDVNNSKEQIFSIIYLNKLDNFYYVKRFKIDKFITDKV 566

Query: 608 YD---STCKLL----------VVSSKGNAFIVEESEIIANTRK--GKTF 641
           Y+      + +            ++K     +E +  I  +R   GK  
Sbjct: 567 YEFLGENDEFVDFSLSPKFVEFSTNKDIVKRIEITNFIVKSRSSIGKRI 615


>gi|15721887|dbj|BAB68393.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 128

 Score =  260 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 73/128 (57%), Positives = 100/128 (78%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDV 120

Query: 168 FPSKFPNL 175
            P+K PNL
Sbjct: 121 MPTKIPNL 128


>gi|218674543|ref|ZP_03524212.1| DNA gyrase subunit A [Rhizobium etli GR56]
          Length = 719

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 134/635 (21%), Positives = 244/635 (38%), Gaps = 115/635 (18%)

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
           GPDFPTG  I+  R  I  +Y  GRG   +R    +E +      I++TEIPYQV K+ +
Sbjct: 1   GPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATM 59

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           IEK+AEL+  KRI  + D+RDES      V+    R  + ++++  ++  + ++T F  N
Sbjct: 60  IEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCN 119

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           M  L+ G  P+ + L  +L+ +++ R EV+ RR+ F ++    R  +L GL IA  NIDE
Sbjct: 120 MVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLAIAVANIDE 178

Query: 403 IIAIIRNEDK-----------------------------PKPVMVSRFSLTENQVDAILN 433
           +I +IR                                  +      ++L+E Q  AIL 
Sbjct: 179 VIRVIRQAPDPQSAREELMTRRWPAADVESLIRLIDDPRHRINDDMTYNLSEEQARAILE 238

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           LRL  L  L   +I  EL+ +  E      +L+S  +    +  E+  V++ F       
Sbjct: 239 LRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDEFGTP---- 294

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   +          + +I +E + V +S+ G+I+          +      S +  
Sbjct: 295 -RRTEIVDGGLEMD---DEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTT 350

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           ++ D +      +T   +L  S+ G  Y      L   +    G+A+  ++ L   + I 
Sbjct: 351 RDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERIT 410

Query: 604 TAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKV 656
           T               ++  +++G     + S+ +   R GK  +K+    +++  V   
Sbjct: 411 TILPLPEDEANWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVETC 470

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVICFK--------- 704
           T  D V +     + + FS+D +     R   GVR  +  +G     +            
Sbjct: 471 TERDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIVGHVDAEPWE 530

Query: 705 -------------------------------------------ICEGLTWIDSAGRSYNR 721
                                                             +  + + + +
Sbjct: 531 RAAYLKRSATERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVLTVSEKGFGK 590

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRS---GKFLSS 753
             +     +  RGG G        ++   G+ +++
Sbjct: 591 RSSSYDFRISGRGGKGIRATDTS-KTGEIGELVAA 624



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        +   + R GK        K     ++     V  GD + +V
Sbjct: 577 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 636

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDV 700
            +  +L+   +  I   SR  KGV + S  KD  +  V
Sbjct: 637 SDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSV 674


>gi|297242275|gb|ADI24810.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 83/177 (46%), Positives = 125/177 (70%), Gaps = 1/177 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           +KSAR VG+ +GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   QKSARTVGDGLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|117654333|gb|ABK55597.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 196

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 102/196 (52%), Positives = 144/196 (73%), Gaps = 1/196 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKEXIIV 179

Query: 271 TEIPYQVQKSRLIEKI 286
           TE+P QV K++LIE I
Sbjct: 180 TELPXQVXKAKLIEXI 195


>gi|225552369|ref|ZP_03773309.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia sp.
           SV1]
 gi|225371367|gb|EEH00797.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia sp.
           SV1]
          Length = 626

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 136/639 (21%), Positives = 252/639 (39%), Gaps = 53/639 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      I         PDFPTGGI+  +       Y  G G   VRA+   
Sbjct: 171 ILNAVKSELLGESYDIY--------PDFPTGGIVDVNE------YADGNGKVLVRAKIET 216

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +       IV+ E+P+      LI  I + I    I +     ++   +   +     R
Sbjct: 217 IDEKT----IVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +L   R P V  +  ++K   AH +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLL-SERYPVVYTIKDLIKFHAAHLQKILKMELEL 329

Query: 379 RMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           +   I  ++     + + I       +  I +  +    ++       E+    +L   +
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKRIYKLLETISKEGNIVSIILSEVLRYKESFSREVLKEDV 389

Query: 437 RSL-----RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
            +L     RK+  + I     ++    +++  + ++           I  +   +SK   
Sbjct: 390 ENLLKIPIRKISLFDIDKNSKDIKILNKELKGINSNISSIKGYSINFIDLLLAKYSKEHQ 449

Query: 492 LGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
              + +    +  +       +  +      V  S         +   D   +  +    
Sbjct: 450 RKTKISLIKSKNVKEIATKNMKVYLNLAEGFVGTSLFDGEFIGNASYYDKILVFRENSYV 509

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD- 609
           LK        D+  + +                  +       +        +T  VY+ 
Sbjct: 510 LKNIEDKTFIDKKNVCALVYDINNSKEQIFSIIYFNRLDNFYYVKRFKIDKFITDKVYEF 569

Query: 610 --STCKLL----------VVSSKGNAFIVEESEIIANTR 636
                + +            ++K     +E    +  +R
Sbjct: 570 LGENDEFVDFSLNPEFVEFSTNKDIVKRIEIDNFMVKSR 608


>gi|221217415|ref|ZP_03588886.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 72a]
 gi|221192693|gb|EEE18909.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 72a]
          Length = 626

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 141/649 (21%), Positives = 254/649 (39%), Gaps = 61/649 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      I         PDFPTGGI+  +       Y  G G   VRA+   
Sbjct: 171 ILNAVKSELLGESYDIY--------PDFPTGGIVDVNE------YADGNGKVLVRAKIET 216

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +       IV+ E+P+      LI  I + I    I +     ++   +   +     R
Sbjct: 217 IDEKT----IVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +L   R P V  +  ++K   AH +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLL-SERYPVVYTIKDLIKFHAAHLQKILKMELEL 329

Query: 379 RMQAIDRRVEILKGLLIAYLN----------IDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           +   I  ++       I               +E I  I   +  +        + +  V
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKKIYKLLETISKEENIVSIILSEVLRHKESFSREVLKEDV 389

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +L + +R +   +  +   ++  L  E + I+S ++S           I  +   +SK
Sbjct: 390 ENLLKIPIRKISLFDIDKNSKDIKILNKELKSINSNISS---IRGYSINFIDLLLAKYSK 446

Query: 489 STDLGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                 + +    +  +       +  +         S         +   D   +  + 
Sbjct: 447 EHQRKTKISLIKSKNVKEIATKNMKVYLNLAEGFAGTSLFDGEFIGNASYYDKILVFREN 506

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
              LK        D+  + +                  +       +        +T  V
Sbjct: 507 SYVLKNIEDKTFIDKKNVCALVYDINNSKEQIFSIIYFNRLDNFYYVKRFKIDKFITDKV 566

Query: 608 YD---STCKLL----------VVSSKGNAFIVEESEIIANTRK--GKTF 641
           Y+      + +            ++K     +E    +  +R   GK  
Sbjct: 567 YEFLGENDEFVDFSLNPEFVEFSTNKDIVKRIEIDNFMVKSRSSIGKRI 615


>gi|2921173|gb|AAC04690.1| topoisomerase IV subunit C [Mycoplasma hominis ATCC 23114]
          Length = 145

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/145 (51%), Positives = 102/145 (70%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI+++M  + L     FKKSARIVG+VIG+ HPHGD S+Y++LVR+AQ +  
Sbjct: 1   DGLKPVQRRILYSMWNLHLKNSEPFKKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKS 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
            +PLI   GN G+ID D AAA RYTE+R+ +++EL+L+ +D   V     +++ + EP+V
Sbjct: 61  NFPLIEMHGNKGSIDDDPAAAMRYTESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIV 120

Query: 168 FPSKFPNLLANGTSGIAVGMATSIP 192
            P+ FPNLL NG  GIA G AT IP
Sbjct: 121 LPALFPNLLVNGAKGIAAGFATEIP 145


>gi|15594381|ref|NP_212169.1| DNA topoisomerase IV subunit A [Borrelia burgdorferi B31]
 gi|195941775|ref|ZP_03087157.1| DNA topoisomerase IV subunit A [Borrelia burgdorferi 80a]
 gi|216264420|ref|ZP_03436412.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 156a]
 gi|218249341|ref|YP_002374569.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi ZS7]
 gi|223889128|ref|ZP_03623717.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 64b]
 gi|225549222|ref|ZP_03770195.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 94a]
 gi|226322050|ref|ZP_03797575.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi Bol26]
 gi|3914263|sp|O51066|PARC_BORBU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|2687910|gb|AAC66419.1| DNA topoisomerase IV (parC) [Borrelia burgdorferi B31]
 gi|215980893|gb|EEC21700.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 156a]
 gi|218164529|gb|ACK74590.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi ZS7]
 gi|223885377|gb|EEF56478.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 64b]
 gi|225370080|gb|EEG99520.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 94a]
 gi|226232640|gb|EEH31394.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi Bol26]
 gi|312149750|gb|ADQ29821.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi N40]
          Length = 626

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 141/649 (21%), Positives = 254/649 (39%), Gaps = 61/649 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      I         PDFPTGGI+  +       Y  G G   VRA+   
Sbjct: 171 ILNAVKSELLGESYDIY--------PDFPTGGIVDVNE------YADGNGKVLVRAKIET 216

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +       IV+ E+P+      LI  I + I    I +     ++   +   +     R
Sbjct: 217 IDEKT----IVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +L   R P V  +  ++K   AH +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLL-SERYPVVYTIKDLIKFHAAHLQKILKMELEL 329

Query: 379 RMQAIDRRVEILKGLLIAYLN----------IDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           +   I  ++       I               +E I  I   +  +        + +  V
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKKIYKLLETISKEENILSIILSEVLRHKESFSREVLKEDV 389

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +L + +R +   +  +   ++  L  E + I+S ++S           I  +   +SK
Sbjct: 390 ENLLKIPIRKISLFDIDKNSKDIKILNKELKSINSNISS---IRGYSINFIDLLLAKYSK 446

Query: 489 STDLGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                 + +    +  +       +  +         S         +   D   +  + 
Sbjct: 447 EHQRKTKISLIKSKNVKEIATKNMKVYLNLAEGFAGTSLFDGEFIGNASYYDKILVFREN 506

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
              LK        D+  + +                  +       +        +T  V
Sbjct: 507 SYVLKNIEDKTFIDKKNVCALVYDINNSKEQIFSIIYFNRLDNFYYVKRFKIDKFITDKV 566

Query: 608 YD---STCKLL----------VVSSKGNAFIVEESEIIANTRK--GKTF 641
           Y+      + +            ++K     +E    +  +R   GK  
Sbjct: 567 YEFLGENDEFVDFSLNPEFVEFSTNKDIVKRIEIDNFMVKSRSSIGKRI 615


>gi|82408805|gb|ABB73196.1| DNA gyrase [Listonella anguillarum]
 gi|82408807|gb|ABB73197.1| DNA gyrase [Listonella anguillarum]
          Length = 127

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/127 (55%), Positives = 97/127 (76%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ G
Sbjct: 1   RRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           QGNFG+IDGDSAAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PN
Sbjct: 61  QGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPN 120

Query: 175 LLANGTS 181
           LL NG+S
Sbjct: 121 LLVNGSS 127


>gi|226321135|ref|ZP_03796676.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 29805]
 gi|226233427|gb|EEH32167.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 29805]
          Length = 626

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 141/649 (21%), Positives = 253/649 (38%), Gaps = 61/649 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +      I         PDFPTGGI+  +       Y  G G   VRA+   
Sbjct: 171 ILNAVKSELLGESYDIY--------PDFPTGGIVDVNE------YADGNGKVLVRAKIET 216

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +       IV+ E+P+      LI  I + I    I +     ++   +   +     R
Sbjct: 217 IDEKT----IVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +L   R P V  +  ++K   AH +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLL-SERYPVVYTIKDLIKFHAAHLQKILKMELEL 329

Query: 379 RMQAIDRRVEILKGLLIAYLN----------IDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           +   I  ++       I               +E I  I   +  +        + +  V
Sbjct: 330 QKSKILEKIFSKTLEQIFIEKKIYKLLETISKEENILSIILSEVLRHKESFSREVLKEDV 389

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +L + +R +   +  +   ++  L  E + I+S ++S           I  +   +SK
Sbjct: 390 ENLLKIPIRKISLFDIDKNSKDIKILNKELKSINSNISS---IRGYSINFIDLLLAKYSK 446

Query: 489 STDLGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +    +  +       +  +         S         +   D   +  + 
Sbjct: 447 EHQRKTEISLIKSKNVKEIATKNMKVYLNLAEGFAGTSLFDGEFIGNASYYDKILVFREN 506

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
              LK        D+  + +                  +       +        +T  V
Sbjct: 507 SYVLKNIEDKTFIDKKNVCALVYDINNSKEQIFSIIYFNRLDNFYYVKRFKIDKFITDKV 566

Query: 608 YD---STCKLL----------VVSSKGNAFIVEESEIIANTRK--GKTF 641
           Y+      + +            ++K     +E    +  +R   GK  
Sbjct: 567 YEFLGENDEFVDFSLNPEFVEFSTNKDIVKRIEIDNFMVKSRSSIGKRI 615


>gi|219923482|emb|CAQ86603.1| gyrase subunit A [Klebsiella oxytoca]
          Length = 139

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/135 (59%), Positives = 107/135 (79%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD
Sbjct: 2   GNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGD 61

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 62  SAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 121

Query: 185 VGMATSIPSHNVQEI 199
           VGMAT+IP HN+ E+
Sbjct: 122 VGMATNIPPHNLTEV 136


>gi|51246133|ref|YP_066017.1| DNA topoisomerase IV subunit A [Desulfotalea psychrophila LSv54]
 gi|50877170|emb|CAG37010.1| probable topoisomerase IV, subunit A [Desulfotalea psychrophila
           LSv54]
          Length = 663

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 149/634 (23%), Positives = 257/634 (40%), Gaps = 69/634 (10%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  +L Y    I+ERAIP + DG KPV RRI+  +  M       F K A +VGE
Sbjct: 8   LHQLFEYNFLEYTSYVIRERAIPAIDDGLKPVQRRILQTLFNM---EDGRFHKVANLVGE 64

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + KLHPHGD S++ +LV LA     +  LI  QGNFGNI  GDSA+A RY E R++ +A
Sbjct: 65  TM-KLHPHGDASIFSALVNLA----NKGFLIERQGNFGNIFTGDSASAPRYIECRLSPLA 119

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + +L   ++D  +F D+Y+    EPV  P+K P LL  G  GIAVGMAT I  HN  E+ 
Sbjct: 120 KEVL--FNKDITEFIDSYDGRMVEPVTLPAKLPLLLLQGAEGIAVGMATKIMPHNFCELL 177

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A  A++ + E        + + PDFP G         +V+      G  +++ R  + E
Sbjct: 178 QAQKAVLLDEE--------FTLYPDFPQG--------GLVDVSGYEDGNGKIKCRARIRE 221

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      I++ EIPY      L + I +   A +I ++  I D +AE V I      R +
Sbjct: 222 LNE--KTIIIDEIPYSTTTQSLTDSIEKAAKAGKIKIIS-INDYTAEKVEIE-IKVARGI 277

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
                +++++  +D E     N+  L  G+ P    +  +++      +  L +     +
Sbjct: 278 YAKDTIKALYAFTDCEVPISPNL-TLIKGKTPATSSVREVIEYNTLKLKADLTKELEINL 336

Query: 381 QAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKP--------KPVMVSRFSLTENQVDA 430
             ++ ++     + + I       I      E                    +TE  V  
Sbjct: 337 ARLEEKLHARLLEQIFIEQRLYKNIEEETSYESIMASVDTALIPFRSELFRDVTEEDVTR 396

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L +R++ + + +  +   E+  +  + + I   L         +A  I  + ++ +K  
Sbjct: 397 LLEIRIKRISRFDINKQDKEIRAIRKDIKAIKISLKD------MVAFTIASIDKLLAKYG 450

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           +   R+T   +                  + V       +    S          K  + 
Sbjct: 451 ENYPRKTEIKQF---------------SEVVVRKIALSNLTVGYSRETGFLGHSVKGEEE 495

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
              ++     DR+ L+ +DG+   +P  + +      +     I +  ++ +      D 
Sbjct: 496 EDFSVTCSEYDRLFLIYSDGRYKVIPVTDKVFAGTDLK----YIGIVPSEQVFNIVYRDG 551

Query: 611 TCKLLVVSSKGNAFIVEESEI--IANTRKGKTFL 642
                 V        + E E       ++ K  L
Sbjct: 552 NENFAYVKRFNTPKFILEKEYHLFPEHKRSKILL 585


>gi|313600326|gb|ADR71659.1| DNA gyrase subunit A [Salmonella sp. ES-B43]
          Length = 128

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/128 (56%), Positives = 100/128 (78%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 168 FPSKFPNL 175
            P+K PNL
Sbjct: 121 MPTKIPNL 128


>gi|11863191|gb|AAD43664.2| topoisomerase IV subunit A [Staphylococcus epidermidis]
          Length = 143

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/143 (49%), Positives = 102/143 (71%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRH 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            LI   GN G+ID D  AA RYTEA+++Q++E +L+ ++++ V F   Y++   EP+V P
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIP 192
           ++FPNLL NG++GI+ G AT IP
Sbjct: 121 ARFPNLLINGSTGISSGYATDIP 143


>gi|60678992|gb|AAX33777.1| DNA gyrase subunit A [Mycoplasma synoviae]
          Length = 135

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 80/135 (59%), Positives = 106/135 (78%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           HRRI++ MSE+G+  G  +KKSARIVG+V+GK HPHGD SVY+++VRLAQ F  RYPL+ 
Sbjct: 1   HRRILYDMSELGMTPGTQYKKSARIVGDVLGKYHPHGDSSVYNAMVRLAQDFSMRYPLVD 60

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           G GNFG+IDGD  A+ RYTEARM +++  +L+G+ ++ VDF D Y+  + EP V PS+FP
Sbjct: 61  GHGNFGSIDGDEPASMRYTEARMAKISTELLEGIKKNTVDFVDNYDSTEKEPAVLPSRFP 120

Query: 174 NLLANGTSGIAVGMA 188
           NLL +G+ GIAVGMA
Sbjct: 121 NLLVSGSIGIAVGMA 135


>gi|296253498|gb|ADH04210.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/139 (53%), Positives = 105/139 (75%), Gaps = 1/139 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVHRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE+R+++++EL+L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 171 KFPNLLANGTSGIAVGMAT 189
           + P++L NGT+GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|325474427|gb|EGC77614.1| topoisomerase IV [Treponema denticola F0402]
          Length = 700

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 148/610 (24%), Positives = 243/610 (39%), Gaps = 45/610 (7%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            L   +L YA   I++RAIPDL DG KPV RRI+H++ EM       F K A ++G  + 
Sbjct: 4   FLIRIFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEM---DDGKFHKVANVIGHCM- 59

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELI 143
           K HPHGD S+ ++LV LA     +   I  QGNFGNI  GD A+A RY E R+   A+ I
Sbjct: 60  KYHPHGDASIGNALVVLA----SKELFIDTQGNFGNIFTGDEASAPRYIECRVNDFAKTI 115

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
               +    D+  +Y+  + EP+ F +K P +LA G  GIAVGM+T I  HN+ EI EA 
Sbjct: 116 FY--NPHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEIIEAE 173

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
            A +            + + PDFPTGG+I  S       Y  G G   VRA+    +   
Sbjct: 174 KAFLSGK--------SFALFPDFPTGGLIDVSE------YEDGLGKVLVRAKLDTSDEK- 218

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
               IV+ E+P+      +I  I     A ++  + +I D + E V I L         D
Sbjct: 219 ---RIVIRELPFGSTTESMINSIEAASKAGKVK-ISEISDYTGEKVEIELKLPRGVYSAD 274

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           ++ ++++  ++ E   P    ++    +P  + +  I+K       ++L     +    +
Sbjct: 275 VV-DALYAFTECEQSIPC-NLLVIKDNLPVQITVTDIIKYHAKQLMQILKDELEYERAML 332

Query: 384 DRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------FSLTENQVDAILN 433
             R+ +   + + I      +I  +   E     V+             +TE+ VD +L 
Sbjct: 333 TERLHLRTLERIFIEERIYKKIETMKTAEGVINAVIKGFVPFKKELIRDVTEDDVDKLLK 392

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV--KEIFSKSTD 491
           + +R +   +  + + E+  +    ++I  LL + K     +   I      E F + T+
Sbjct: 393 IPIRRISLYDINKNREEVREINNRLKEIAKLLKNLKGYAISVLDGIAAKLPAEEFKRKTE 452

Query: 492 L-GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           + G  +    E    D A            +V         S       L          
Sbjct: 453 ITGFTKVDVKEAVTRDTALRYDEETGYLGTSVTTGKEILRVSPYDRIFVLRKSGVYTVMD 512

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           +   +   T       +       +    +        A      +              
Sbjct: 513 VPDRVFVDTGMWYCGFAEKEDLSKVLFTVIYRDSKTKYAYIKRARVEGYILNRDYLFAPD 572

Query: 611 TCKLLVVSSK 620
             ++L VS+K
Sbjct: 573 NTEVLFVSTK 582


>gi|296253492|gb|ADH04207.1| topoisomerase IV subunit A [Gallibacterium anatis]
 gi|296253500|gb|ADH04211.1| topoisomerase IV subunit A [Gallibacterium anatis]
 gi|296253504|gb|ADH04213.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 73/139 (52%), Positives = 104/139 (74%), Gaps = 1/139 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE+R+++++EL+L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 171 KFPNLLANGTSGIAVGMAT 189
           + P++L NGT+GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|284154462|gb|ADB78332.1| DNA gyrase [Bacillus sp. B-51178]
 gi|284154472|gb|ADB78337.1| DNA gyrase [Bacillus sp. B-51183]
          Length = 189

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 96/190 (50%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|284154382|gb|ADB78292.1| DNA gyrase [Bacillus sp. B-51132]
 gi|284154386|gb|ADB78294.1| DNA gyrase [Bacillus sp. B-51134]
 gi|284154392|gb|ADB78297.1| DNA gyrase [Bacillus sp. B-51137]
 gi|284154394|gb|ADB78298.1| DNA gyrase [Bacillus sp. B-51138]
 gi|284154412|gb|ADB78307.1| DNA gyrase [Bacillus sp. B-51148]
 gi|284154418|gb|ADB78310.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154436|gb|ADB78319.1| DNA gyrase [Bacillus sp. B-51161]
 gi|284154440|gb|ADB78321.1| DNA gyrase [Bacillus sp. B-51164]
 gi|284154466|gb|ADB78334.1| DNA gyrase [Bacillus sp. B-51180]
 gi|284154484|gb|ADB78343.1| DNA gyrase [Bacillus sp. B-51190]
 gi|284154488|gb|ADB78345.1| DNA gyrase [Bacillus sp. B-51192]
 gi|284154490|gb|ADB78346.1| DNA gyrase [Bacillus sp. B-51193]
 gi|284154542|gb|ADB78372.1| DNA gyrase [Bacillus sp. B-51220]
          Length = 189

 Score =  257 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 96/190 (50%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIV 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|284154450|gb|ADB78326.1| DNA gyrase [Bacillus sp. B-51172]
 gi|284154458|gb|ADB78330.1| DNA gyrase [Bacillus sp. B-51176]
 gi|284154464|gb|ADB78333.1| DNA gyrase [Bacillus sp. B-51179]
 gi|284154564|gb|ADB78383.1| DNA gyrase [Bacillus sp. B-51232]
          Length = 189

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 95/190 (50%), Positives = 138/190 (72%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+   P
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKKP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIV 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|284154404|gb|ADB78303.1| DNA gyrase [Bacillus licheniformis]
 gi|284154408|gb|ADB78305.1| DNA gyrase [Bacillus licheniformis]
 gi|284154410|gb|ADB78306.1| DNA gyrase [Bacillus licheniformis]
 gi|284154414|gb|ADB78308.1| DNA gyrase [Bacillus licheniformis]
 gi|284154448|gb|ADB78325.1| DNA gyrase [Bacillus licheniformis]
 gi|284154482|gb|ADB78342.1| DNA gyrase [Bacillus licheniformis]
 gi|284154486|gb|ADB78344.1| DNA gyrase [Bacillus licheniformis]
          Length = 189

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 95/190 (50%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G ++  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 DITLPELMEIIPGPDFPTAG-LILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|11863195|gb|AAD43672.2| topoisomerase IV subunit A [Staphylococcus hominis subsp. hominis]
          Length = 143

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/143 (48%), Positives = 102/143 (71%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRH 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            LI   GN G+ID D  AA RYTEA+++Q++E +++ ++++ V F   Y++   EP+V P
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVSFVPNYDDTTLEPMVLP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIP 192
           ++FPNLL NG++GI+ G AT IP
Sbjct: 121 ARFPNLLVNGSTGISAGYATDIP 143


>gi|296253496|gb|ADH04209.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/139 (53%), Positives = 104/139 (74%), Gaps = 1/139 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL
Sbjct: 1   PVHRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYGAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE+R+++++EL+L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 171 KFPNLLANGTSGIAVGMAT 189
           + P++L NGT+GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|94270066|ref|ZP_01291646.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
 gi|93450953|gb|EAT01942.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
          Length = 662

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 146/653 (22%), Positives = 258/653 (39%), Gaps = 73/653 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +E +L Y    I+ERAIPDL DG KPV RRI+  +  M       F K A +VG
Sbjct: 8   ELHRLFDENFLDYTSYVIRERAIPDLADGLKPVQRRILQTLHNM---DDGRFHKVANVVG 64

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
           E + KLHPHGD S++ +LV LA     +  LI  QGNFGN+  GD A+A RY E R++ +
Sbjct: 65  ETM-KLHPHGDASIFSALVNLA----NKGYLIDRQGNFGNVHTGDGASAPRYIECRLSPL 119

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   +   +++  +F D+Y+    EPV  P++ P LL  G  GIAVGMAT I  HN  E+
Sbjct: 120 ARETM--FNKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMPHNFGEL 177

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A+          I +   + + PDFP GG++  S       Y  G G  R RAR    
Sbjct: 178 LTASK--------QILREEPFELFPDFPQGGLLDAS------GYEDGNGRLRCRARIETR 223

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       IV+ +IPY      LIE + +   A +  +L  I D +AEDV I      R 
Sbjct: 224 DDKT----IVIRDIPYGTTTQSLIESVEKAARAGKFKILS-IDDYTAEDVEIE-IKLARG 277

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              +  +++++  +D E     N   +   + P +M +  +L+E  A  R++L +     
Sbjct: 278 FKAEETIKALYAFTDCEIPISPNF-TVIREQTPAIMTVSEVLRENTARLRQLLKKELELD 336

Query: 380 MQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL--------TENQVD 429
           +  +  +++    + + I      +I            +  +            +   ++
Sbjct: 337 LARLREKLQARLLEQIFIEERLYKQIEECPSLAVVLTTIDKALKPFAAELVRPVSREDLE 396

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +L +R++ + + +   I+ +   +   ++ I ++  +           + ++ + + + 
Sbjct: 397 RLLEIRIKRISRYD---IERQKKEIKGIRKDIVAVEKNLADLTAYAIRFLDDLLKRYGQQ 453

Query: 490 TDLGRRRTTFCE--------------VSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
                  T+F E                        Q     E           +   +S
Sbjct: 454 YPRRTELTSFKEVQASQVALSNLSLAYDPESGFLGTQVKAPAENRLACSEYDKILLISRS 513

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILL--LSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
               + A+  K      +       D+ +   +  DG           + +   +    L
Sbjct: 514 GWYKVVAVPDKIFVGHDLKWWGKAADKTIFNLVYRDGAQNLCYVKRFTTPKFILDKEYRL 573

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
              +   +I           L + +  G     + +     +RK +   ++  
Sbjct: 574 FAEHRRSEI-----------LFLKTGSGVNIRTQLAP-SPRSRKNREVFRLDD 614


>gi|163784373|ref|ZP_02179268.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880356|gb|EDP73965.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 633

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 145/589 (24%), Positives = 269/589 (45%), Gaps = 32/589 (5%)

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG +GIAVG++TSIP HN  E+ EA   L + P  ++E+L ++I GPDFPTGGI+  S 
Sbjct: 1   CNGATGIAVGLSTSIPPHNFTEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILTTSH 60

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + +V+ Y  GRG   ++ +  +E++      IV+ EIPYQV K  LI++IAEL+   +  
Sbjct: 61  KDMVKIYEDGRGSITLKGKARIEKLAGNRHRIVIYEIPYQVNKVELIKRIAELVRTGKEK 120

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  D   ++    R  +P+ +++ ++  + ++   P+N+ VL  G+ P+ + 
Sbjct: 121 GISDLRDESDRDGIRIIVELKREANPEKVLKKLYQRTQLQKSIPINLTVLV-GKQPKTLS 179

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           L  +L E++ HR EV+ +R+ + +Q  ++R+ I++GLL A  N D +I I+R        
Sbjct: 180 LKEVLLEFIKHRIEVITKRTLYELQKAEKRLHIIEGLLKALENADRVIEIVRGSKDSAEA 239

Query: 417 MVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                  F L++ Q  AIL++RL     LE  ++ +E D L  + E+   +L+S +++  
Sbjct: 240 KFKLTSEFQLSDTQAQAILDMRLSRFTSLESEKLYNEADELRKQIERYREILSSEQEKIK 299

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK-EPITVVISN------ 526
               EI E+ E +        R+T   E         +  +I       ++         
Sbjct: 300 VFINEIDELLEKYGD-----DRKTIVLEKDEGKLTFEENYIIAVLSNGKIINYKIDNPED 354

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           R     + +  ++        GD L       ++  I  ++ DG+     A +       
Sbjct: 355 REEKERIFNKVINEITSLILPGDYLVSIQEIKSSQPIAFITNDGRCIWSLAAD------L 408

Query: 587 GEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            +    L  ++ N+ + TAF  +    +L +++  G    +   +I   ++  +  + + 
Sbjct: 409 PKGEGKLKYIDENKIVGTAFKSEGEEDRLFLLTKNGIIKRMTFEDIFYKSQN-QQIIPLQ 467

Query: 646 SEEKMKLVVKVTGDH---VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVI 701
            ++++ +      DH   +A+      LLIF  +QI     + KGV      +G      
Sbjct: 468 EDDEIVMAFA--DDHPSYIAIYTAKADLLIFERNQIRVTGAKAKGVEGIDLDEGDYVK-G 524

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            F +      +        +  N     + KR   G +  K   +  + 
Sbjct: 525 GFLVNSEEYILTITKNGQCKLVNKEEFPIKKRAQKGLMAVK-LQKGDEL 572



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 9/178 (5%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFK----EGDSLKIALHAHTTDRILLLSTDGKA 572
           +E    +++  G I+ +    +   + + +    + D   +   A      + + T    
Sbjct: 433 EEDRLFLLTKNGIIKRMTFEDIFYKSQNQQIIPLQEDDEIVMAFADDHPSYIAIYTAKAD 492

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
             +   N +   G        IDL+    +   F+ +S   +L ++  G   +V + E  
Sbjct: 493 LLIFERNQIRVTGAKAKGVEGIDLDEGDYVKGGFLVNSEEYILTITKNGQCKLVNKEEFP 552

Query: 633 ANTR--KGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK 685
              R  KG   +K+   +++ +   V   D V +     K+    ID   IP   R  
Sbjct: 553 IKKRAQKGLMAVKLQKGDELNICTSVNIEDEVILSTSGGKVFKMIIDDKRIPVAKRTA 610


>gi|297568941|ref|YP_003690285.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924856|gb|ADH85666.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 660

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 154/641 (24%), Positives = 252/641 (39%), Gaps = 72/641 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           +L    +E ++ Y    I+ERAIPDL DG KPV RRI+  +          F K A +VG
Sbjct: 8   NLHKLFDENFIDYTSYVIRERAIPDLADGLKPVQRRILQTLH---NVDDGRFHKVANVVG 64

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
           E + KLHPHGD S++ +LV LA     +  L+  QGNFGNI  GDSA+A RY E R+T +
Sbjct: 65  ETM-KLHPHGDASIFSALVNLA----NKGYLVDRQGNFGNIYTGDSASAARYIECRLTPL 119

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   +   + +  +F D+Y+    EPV  P+K P LL  G  GIAVGMAT I  HN  E+
Sbjct: 120 ARETM--FNRELTEFTDSYDGRMKEPVSLPAKLPLLLLQGAEGIAVGMATKIMPHNFCEL 177

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   ++   E        + + PDF  G         +++      G  R+R R  +E
Sbjct: 178 LQAQKKILQGEE--------FAVYPDFYQG--------GLLDVSAYDDGNGRLRCRARIE 221

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E  +    I++ EIP+      LIE + +   A +  +L  I D +AE+V I      R 
Sbjct: 222 E--KDDKTIIIREIPFGTNTQGLIESVEKAARAGKFKILS-INDYTAEEVEIE-IKLARG 277

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           L  +  +++++  +D E     N  V+   R P ++ +  +L+E  +    +L +     
Sbjct: 278 LKAEETIKALYAFTDCELAISPNFTVIRD-RNPVILSVSEVLRENTSRLYNLLEKELQLE 336

Query: 380 MQAIDRRV--EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
           +  +  R+    L+ + I      +I      E   K +  +    T   V  +    + 
Sbjct: 337 LARLKERLQAHQLERIFIEERLYKQIEECPSFELVIKTIDEALKPYTAELVRPVSREDIE 396

Query: 438 SL-----RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L     +++  Y I+ +   + A   +I  +  + +         + ++   +      
Sbjct: 397 KLLEIKIKRISRYDIERKKKEIKATLRQIKEVEKNLRDMTGYCIRFLDDLLARYGGDYPR 456

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
               TTF                      V  S          +  +      +      
Sbjct: 457 RTELTTFA--------------------GVQASQVALSNLTIGYDRESGFFGTQVKAGAD 496

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            +L     D+ILL+   G    +     +          L      ++        D   
Sbjct: 497 NSLACSEYDKILLIDKSGWYKVINVPEKIFIGHDL----LWWGRVADRQTFNMVYRDGKQ 552

Query: 613 KLL----VVSSKGNAFIVEESE--IIANTRKGKTFLKVSSE 647
            L      V+ K   FIV++         R    FLK    
Sbjct: 553 NLCYLKRFVTPK---FIVDKEYRLFAEQRRSEIIFLKTGEG 590


>gi|296253502|gb|ADH04212.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/139 (52%), Positives = 103/139 (74%), Gaps = 1/139 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYGAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE+R+++++EL+L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 171 KFPNLLANGTSGIAVGMAT 189
           + P++L NGT+GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|94264176|ref|ZP_01287973.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
 gi|93455434|gb|EAT05632.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
          Length = 711

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 151/637 (23%), Positives = 259/637 (40%), Gaps = 72/637 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +E +L Y    I+ERAIPDL DG KPV RRI+  +  M       F K A +VG
Sbjct: 57  ELHRLFDENFLDYTSYVIRERAIPDLADGLKPVQRRILQTLHNM---DDGRFHKVANVVG 113

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
           E + KLHPHGD S++ +LV LA     +  LI  QGNFGN+  GD A+A RY E R++ +
Sbjct: 114 ETM-KLHPHGDASIFSALVNLA----NKGYLIDRQGNFGNVHTGDGASAPRYIECRLSPL 168

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   +   +++  +F D+Y+    EPV  P++ P LL  G  GIAVGMAT I  HN  E+
Sbjct: 169 ARETM--FNKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMPHNFGEL 226

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A+          I +   + + PDFP GG++  S       Y  G G  R RAR    
Sbjct: 227 LTASK--------QILREEPFELFPDFPQGGLLDAS------GYEDGNGRLRCRARIETR 272

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       IV+ +IPY      LIE + +   A +  +L  I D +AEDV I      R 
Sbjct: 273 DDKT----IVIRDIPYGTTTQSLIESVEKAARAGKFKILS-IDDYTAEDVEIE-IKLARG 326

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              +  +++++  +D E     N   +   + P +M +  +L+E  A  R++L +     
Sbjct: 327 FKAEETIKALYAFTDCEIPISPNF-TVIREQTPAIMTVSEVLRENTARLRQLLKKELELD 385

Query: 380 MQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL--------TENQVD 429
           +  +  +++    + + I      +I            +  +            +   ++
Sbjct: 386 LARLREKLQARLLEQIFIEERLYKQIEECPSLAVVLTTIDKALKPFAAELVRPVSREDLE 445

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +L +R++ + + +   I+ +   +   ++ I ++  +           + ++ + + + 
Sbjct: 446 RLLEIRIKRISRYD---IERQKKEIKGIRKDIVAVEKNLADLTAYAIRFLDDLLKRYGQQ 502

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                  T+F EV  +  A    ++        + +                        
Sbjct: 503 YPRRTELTSFKEVQASQVALSNLSLAYDPESGFLGTQ--------------------VKT 542

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S +  L     D+ILL+S  G    +   + +      +          ++ I      D
Sbjct: 543 SAENRLACSEYDKILLISRSGWYKVVAVPDKIFVGHDLK----WWGKAADKTIFNLVYRD 598

Query: 610 STCKLLVVSSKGNAFIVEESE---IIANTRKGKTFLK 643
               L  V        + + E      + R    FLK
Sbjct: 599 GAQNLCYVKRFTTPKFILDKEYRLFAEHRRSEILFLK 635


>gi|213024898|ref|ZP_03339345.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 161

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/162 (57%), Positives = 120/162 (74%), Gaps = 1/162 (0%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++
Sbjct: 1   GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 60

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 61  AHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 120

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
               LA IDN +ISIE L+E+I GPDFPT   I+  R  I E
Sbjct: 121 INGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEE 161


>gi|82408809|gb|ABB73198.1| DNA gyrase [Listonella anguillarum]
 gi|82408811|gb|ABB73199.1| DNA gyrase [Listonella anguillarum]
 gi|82408813|gb|ABB73200.1| DNA gyrase [Listonella anguillarum]
 gi|82408815|gb|ABB73201.1| DNA gyrase [Listonella anguillarum]
          Length = 127

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/127 (55%), Positives = 97/127 (76%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ G
Sbjct: 1   RRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           QGNFG+IDGDSAAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PN
Sbjct: 61  QGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPN 120

Query: 175 LLANGTS 181
           LL NG+S
Sbjct: 121 LLVNGSS 127


>gi|163784169|ref|ZP_02179106.1| DNA gyrase, A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880566|gb|EDP74133.1| DNA gyrase, A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 331

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 66/117 (56%), Positives = 80/117 (68%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             +    +   ++  YL YA+S I  RAIPD+RDG KPV RRI++AM E  +     +KK
Sbjct: 2   SEIIKQPIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEENMYPNRPYKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           SAR VG VI K HPHGD SVYD+LVR+AQ F  RYPL+ GQGNFG+IDGD  AA RY
Sbjct: 62  SARTVGNVIAKYHPHGDSSVYDALVRMAQDFTLRYPLVQGQGNFGSIDGDPPAAMRY 118


>gi|117654321|gb|ABK55591.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 198

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 102/196 (52%), Positives = 142/196 (72%), Gaps = 1/196 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKKRIIV 179

Query: 271 TEIPYQVQKSRLIEKI 286
            E+ YQ  K+ LIEKI
Sbjct: 180 PELXYQXNKAXLIEKI 195


>gi|284154616|gb|ADB78409.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/190 (53%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 EITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|1845587|emb|CAA55580.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 122

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/122 (56%), Positives = 95/122 (77%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 168 FP 169
            P
Sbjct: 121 MP 122


>gi|7262517|dbj|BAA92798.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/139 (58%), Positives = 107/139 (76%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 61  EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 120

Query: 193 SHNVQEICEAALALIDNPE 211
            HN+ E+    LA ID+ +
Sbjct: 121 PHNLTEVINGCLAYIDDED 139


>gi|145629330|ref|ZP_01785129.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978833|gb|EDJ88556.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 589

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 148/587 (25%), Positives = 251/587 (42%), Gaps = 70/587 (11%)

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +A IDN EI+I++L+++I GPDFPT   ++  R+ I E+YR GRG   VRAR  VE   +
Sbjct: 1   MAYIDNNEITIDELMQHIPGPDFPTAA-LINGRKGIEEAYRTGRGKVYVRARATVETNEK 59

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
           G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S ++   +     R    +
Sbjct: 60  GREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRIEIDIKRDAVGE 119

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  ++ L+ M+  F +NM  L     P++  L  I++ ++ HRREV+ RRS F ++  
Sbjct: 120 VVLNHLYSLTQMQVTFGINMVALDH-GQPRLFNLKEIIESFVLHRREVVTRRSIFELRKA 178

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------------------- 415
             R  IL+GL +A  NIDE+IAIIRN    +                             
Sbjct: 179 RERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLHSDIINLLDVSARPDE 238

Query: 416 ------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                 +   ++ L+  QV+AIL LRL  L  +   ++  E + LL +   +  +L+S +
Sbjct: 239 LEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAE 298

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ EVK  F           +         A     +       V       
Sbjct: 299 RLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTD 358

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HG 587
             + +      SA   KE D ++  L A+T D IL  S+ G+ Y L    L        G
Sbjct: 359 YEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRGARG 418

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  ++ L  N+ I        Y+    +++ ++ G    +  +E       G   L +
Sbjct: 419 RPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSNGIIALNL 478

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--------- 693
             E+++  V    G + + +     +++ F+ + +  M R   GVR              
Sbjct: 479 RDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDE 538

Query: 694 -----------------DGGISDVICFKICEGL-TWIDSAGRSYNRS 722
                            D  I  V+   + +G    + +  +   ++
Sbjct: 539 SAVEIEEISDDNAEASLDLNIDKVVSLVVPKGEGAILTATQKRLRKT 585


>gi|284154380|gb|ADB78291.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154396|gb|ADB78299.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154398|gb|ADB78300.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154422|gb|ADB78312.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154430|gb|ADB78316.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154442|gb|ADB78322.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154480|gb|ADB78341.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154494|gb|ADB78348.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154504|gb|ADB78353.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154518|gb|ADB78360.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154520|gb|ADB78361.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154522|gb|ADB78362.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154524|gb|ADB78363.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154532|gb|ADB78367.1| DNA gyrase [Bacillus sp. B-51215]
 gi|284154536|gb|ADB78369.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154538|gb|ADB78370.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154540|gb|ADB78371.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154546|gb|ADB78374.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154550|gb|ADB78376.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154552|gb|ADB78377.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154554|gb|ADB78378.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154558|gb|ADB78380.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154568|gb|ADB78385.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154570|gb|ADB78386.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154572|gb|ADB78387.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154574|gb|ADB78388.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154580|gb|ADB78391.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154582|gb|ADB78392.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154584|gb|ADB78393.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154586|gb|ADB78394.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154588|gb|ADB78395.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154590|gb|ADB78396.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154592|gb|ADB78397.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154598|gb|ADB78400.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154600|gb|ADB78401.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154602|gb|ADB78402.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154604|gb|ADB78403.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154612|gb|ADB78407.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154614|gb|ADB78408.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|296253494|gb|ADH04208.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/139 (52%), Positives = 106/139 (76%), Gaps = 1/139 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AMSE+GL+  A +KKSAR VG+V+GK HPHGD++ Y+++V +AQPF  RYPL
Sbjct: 1   PVHRRLIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDRACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE+R+++++EL+L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 171 KFPNLLANGTSGIAVGMAT 189
           + P++L NGT+GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|297516663|ref|ZP_06935049.1| DNA topoisomerase IV subunit A [Escherichia coli OP50]
          Length = 510

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 273/501 (54%), Gaps = 19/501 (3%)

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKNR 318
             +    +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P++ 
Sbjct: 3   WKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 62

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR ++
Sbjct: 63  RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 122

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
           R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR 
Sbjct: 123 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRH 182

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L KLEE +I+ E   L  E++++  +L S ++  N +  E++     +        RR+ 
Sbjct: 183 LAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAHAYGD-----DRRSP 237

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
             E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+   
Sbjct: 238 LQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGK 296

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
           +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL+ S
Sbjct: 297 SNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMAS 356

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSID 676
             G  F+   ++++A  R GK  + +     +   V +    D +  + +  ++L+F + 
Sbjct: 357 DAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVS 416

Query: 677 QIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
            +P++S+GKG ++ +         + G++ +        LT      R       +L   
Sbjct: 417 DLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIKLRPEELQKV 475

Query: 730 LGKRGGVGSLVPKGFPRSGKF 750
            G+RG  G+ + +G  R  + 
Sbjct: 476 TGERGRRGT-LMRGLQRIDRV 495


>gi|284154628|gb|ADB78415.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 102/190 (53%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NP
Sbjct: 61  TIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 EITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|219920965|emb|CAQ76660.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 137

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 79/136 (58%), Positives = 108/136 (79%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYNTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+
Sbjct: 61  VDGDSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGS 120

Query: 181 SGIAVGMATSIPSHNV 196
           SGIAVGMAT+IP HN+
Sbjct: 121 SGIAVGMATNIPPHNL 136


>gi|34451797|gb|AAQ72394.1| GyrA [Klebsiella variicola]
 gi|34451799|gb|AAQ72395.1| GyrA [Klebsiella variicola]
 gi|34451801|gb|AAQ72396.1| GyrA [Klebsiella variicola]
 gi|34451809|gb|AAQ72400.1| GyrA [Klebsiella variicola]
 gi|34451811|gb|AAQ72401.1| GyrA [Klebsiella sp. 910]
          Length = 131

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/131 (59%), Positives = 102/131 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATSIPSH 194
           AVGMAT+IP H
Sbjct: 121 AVGMATNIPPH 131


>gi|284154498|gb|ADB78350.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNXRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|284154528|gb|ADB78365.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 100/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D+RD Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYRDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|62288333|gb|AAX78442.1| ParC [Brevundimonas diminuta]
          Length = 144

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 92/137 (67%), Positives = 114/137 (83%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           K VHRRI++AM +M L+  AA +K A++VGEV+G  HPHGD S+Y++LVRLAQ F QRYP
Sbjct: 4   KAVHRRIMYAMHQMRLNPQAAARKCAKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYP 63

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFGNIDGDSAAA RYTE ++T  A L+L G+D+DAVDFR TY+++D EPVV P+
Sbjct: 64  LVDGQGNFGNIDGDSAAAMRYTECKLTPAAVLLLDGIDQDAVDFRPTYDDQDEEPVVLPA 123

Query: 171 KFPNLLANGTSGIAVGM 187
            FPNLLANG+SGIAVGM
Sbjct: 124 GFPNLLANGSSGIAVGM 140


>gi|7262521|dbj|BAA92800.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 80/139 (57%), Positives = 106/139 (76%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 61  EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 120

Query: 193 SHNVQEICEAALALIDNPE 211
            HN+ E+    LA ID+ +
Sbjct: 121 PHNLTEVINGCLAYIDDED 139


>gi|284154578|gb|ADB78390.1| DNA gyrase [Bacillus sp. B-51240]
 gi|284154594|gb|ADB78398.1| DNA gyrase [Bacillus sp. B-51249]
 gi|284154596|gb|ADB78399.1| DNA gyrase [Bacillus sp. B-51250]
          Length = 189

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 98/190 (51%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +++I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DVTIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|284154492|gb|ADB78347.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 98/190 (51%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+++ L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITVQDLMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|284154378|gb|ADB78290.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I+ L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|284154424|gb|ADB78313.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154428|gb|ADB78315.1| DNA gyrase [Bacillus sp. B-51157]
 gi|284154444|gb|ADB78323.1| DNA gyrase [Bacillus sp. B-51169]
 gi|284154470|gb|ADB78336.1| DNA gyrase [Bacillus sp. B-51182]
 gi|284154476|gb|ADB78339.1| DNA gyrase [Bacillus sp. B-51185]
 gi|284154478|gb|ADB78340.1| DNA gyrase [Bacillus sp. B-51186]
 gi|284154506|gb|ADB78354.1| DNA gyrase [Bacillus sp. B-51202]
 gi|284154514|gb|ADB78358.1| DNA gyrase [Bacillus sp. B-51206]
 gi|284154534|gb|ADB78368.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154544|gb|ADB78373.1| DNA gyrase [Bacillus sp. B-51222]
 gi|284154606|gb|ADB78404.1| DNA gyrase [Bacillus sp. B-51256]
 gi|284154608|gb|ADB78405.1| DNA gyrase [Bacillus sp. B-51257]
 gi|284154610|gb|ADB78406.1| DNA gyrase [Bacillus sp. B-51258]
 gi|284154620|gb|ADB78411.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154636|gb|ADB78419.1| DNA gyrase [Bacillus subtilis subsp. subtilis]
          Length = 189

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|49532775|dbj|BAD26625.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532777|dbj|BAD26626.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532779|dbj|BAD26627.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532781|dbj|BAD26628.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532783|dbj|BAD26629.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532787|dbj|BAD26631.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532789|dbj|BAD26632.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532793|dbj|BAD26634.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532795|dbj|BAD26635.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532797|dbj|BAD26636.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532805|dbj|BAD26640.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532807|dbj|BAD26641.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 72/132 (54%), Positives = 101/132 (76%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDASVYDAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V P+
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 171 KFPNLLANGTSG 182
           K P LL NG +G
Sbjct: 121 KVPTLLINGATG 132


>gi|284154630|gb|ADB78416.1| DNA gyrase [Bacillus tequilensis]
          Length = 189

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 98/190 (51%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ ++P
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSESP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|117654331|gb|ABK55596.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 200

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 103/201 (51%), Positives = 145/201 (72%), Gaps = 1/201 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKEEILV 179

Query: 271 TEIPYQVQKSRLIEKIAELII 291
            E+PYQV  +RL E  A+L+ 
Sbjct: 180 XELPYQVNXARLXEXXADLVR 200


>gi|284154384|gb|ADB78293.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154400|gb|ADB78301.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154406|gb|ADB78304.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154426|gb|ADB78314.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154434|gb|ADB78318.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154438|gb|ADB78320.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154446|gb|ADB78324.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154502|gb|ADB78352.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154508|gb|ADB78355.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154516|gb|ADB78359.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154548|gb|ADB78375.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154556|gb|ADB78379.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154562|gb|ADB78382.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154576|gb|ADB78389.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154618|gb|ADB78410.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154622|gb|ADB78412.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154624|gb|ADB78413.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
          Length = 189

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|7262519|dbj|BAA92799.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/139 (58%), Positives = 107/139 (76%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 61  EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 120

Query: 193 SHNVQEICEAALALIDNPE 211
            HN+ E+    LA ID+ +
Sbjct: 121 PHNLTEVINGCLAYIDDED 139


>gi|11863193|gb|AAD43671.2| topoisomerase IV subunit A [Staphylococcus hominis]
 gi|12585588|gb|AAG49419.1| topoisomerase IV subunit A [Staphylococcus hominis subsp.
           novobiosepticus]
          Length = 143

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/143 (48%), Positives = 102/143 (71%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDFSVYDAMVRLSQDWKLRH 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            LI   GN G+ID D  AA RYTEA+++Q++E +++ ++++ V F   Y++   EP+V P
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVSFIPNYDDTTLEPMVLP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIP 192
           ++FPNLL NG++GI+ G AT IP
Sbjct: 121 ARFPNLLVNGSTGISAGYATDIP 143


>gi|49532769|dbj|BAD26622.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532771|dbj|BAD26623.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532773|dbj|BAD26624.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532785|dbj|BAD26630.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532799|dbj|BAD26637.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532801|dbj|BAD26638.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532803|dbj|BAD26639.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532811|dbj|BAD26643.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532813|dbj|BAD26644.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532815|dbj|BAD26645.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532817|dbj|BAD26646.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532819|dbj|BAD26647.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532821|dbj|BAD26648.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/132 (54%), Positives = 101/132 (76%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V P+
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 171 KFPNLLANGTSG 182
           K P LL NG +G
Sbjct: 121 KVPTLLINGATG 132


>gi|284154402|gb|ADB78302.1| DNA gyrase [Bacillus mojavensis]
 gi|284154474|gb|ADB78338.1| DNA gyrase [Bacillus mojavensis]
 gi|284154496|gb|ADB78349.1| DNA gyrase [Bacillus mojavensis]
 gi|284154510|gb|ADB78356.1| DNA gyrase [Bacillus mojavensis]
 gi|284154566|gb|ADB78384.1| DNA gyrase [Bacillus mojavensis]
 gi|284154634|gb|ADB78418.1| DNA gyrase [Bacillus mojavensis]
          Length = 189

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 100/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|284037117|ref|YP_003387047.1| DNA topoisomerase (ATP-hydrolyzing) [Spirosoma linguale DSM 74]
 gi|283816410|gb|ADB38248.1| DNA topoisomerase (ATP-hydrolyzing) [Spirosoma linguale DSM 74]
          Length = 904

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 127/491 (25%), Positives = 230/491 (46%), Gaps = 52/491 (10%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  +L YA   I ERA+P + DG KPV RRI+HA+ EM       F K A ++G+ + + 
Sbjct: 57  ENYFLDYASYVILERAVPAVEDGLKPVQRRILHALKEM---DDGRFNKVANVIGQTM-QF 112

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ ++LV + Q    +  L   QG++G+   GD AAA RY E R+++ A+    
Sbjct: 113 HPHGDASIGEALVNIGQ----KELLFDTQGSWGDVRTGDGAAAPRYIEVRLSKFAQD--A 166

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             ++   +++ +Y+    EP+  P KFP LLA G  GIAVG++T I  HN  E+ +A++ 
Sbjct: 167 IYNDKTTEWQLSYDGRKREPITLPVKFPLLLAQGVEGIAVGLSTKILPHNFNELIDASIN 226

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           ++ +  +S+         PDF TGG+I  S      +Y  G  G +VR R  +EEV +  
Sbjct: 227 ILKDKPVSLF--------PDFQTGGLIDVS------NYNDGHRGGKVRVRAKIEEVDKKI 272

Query: 266 WCIVVTEIPYQVQKSRLIE------KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
             I   ++PY V  S+LI+      ++ ++ I      +  + D +A+DV I+       
Sbjct: 273 LAI--RDVPYGVTTSQLIDSIVKAAELGKIRIKAPSRNVAAVVDNTAKDVEIL-VHLQPG 329

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           + PD+ +++++  +D E     N  V+  G  P  + +  IL+        +L R    R
Sbjct: 330 VSPDVTIDALYAFTDCEVSISPNACVII-GDKPHFVSVTDILRVNTHQTVHLLQRELEIR 388

Query: 380 MQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------RFSLTENQVD 429
              +  R+     + + I      +I      E   + +  +           +T++ + 
Sbjct: 389 RSELMERLLYSSLEKIFIENRIYRKIEECETFEAVLEAIDKALKPHKKLFYRVITQDDLI 448

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +  ++++ + K + ++ +  +  L  E        ++            +++++ + K 
Sbjct: 449 RLTEIKIKRISKYDGFKAEELMRRLEQEL---AETEDNLANITRFAIAYYKDLQKKYGK- 504

Query: 490 TDLGRRRTTFC 500
              GR R T  
Sbjct: 505 ---GRERKTEI 512


>gi|284154526|gb|ADB78364.1| DNA gyrase [Bacillus sp. B-51212]
          Length = 189

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 100/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +++   G   IVV
Sbjct: 121 DITISELMEFIPGPDFPTAGKIL-GRSGIRKAYESGRGSITIRAKAEIDQTSSGKERIVV 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|297242249|gb|ADI24797.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 85/182 (46%), Positives = 127/182 (69%), Gaps = 1/182 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           ++ SAR VG+V+GKL PHGD   Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YRISARTVGDVLGKLDPHGDSGCYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG 
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 251 RV 252
            V
Sbjct: 181 TV 182


>gi|284154388|gb|ADB78295.1| DNA gyrase [Bacillus sp. B-51135]
 gi|284154390|gb|ADB78296.1| DNA gyrase [Bacillus sp. B-51136]
 gi|284154416|gb|ADB78309.1| DNA gyrase [Bacillus sp. B-51150]
 gi|284154420|gb|ADB78311.1| DNA gyrase [Bacillus sp. B-51152]
 gi|284154432|gb|ADB78317.1| DNA gyrase [Bacillus sp. B-51159]
 gi|284154456|gb|ADB78329.1| DNA gyrase [Bacillus sp. B-51175]
 gi|284154460|gb|ADB78331.1| DNA gyrase [Bacillus sp. B-51177]
 gi|284154468|gb|ADB78335.1| DNA gyrase [Bacillus sp. B-51181]
 gi|284154500|gb|ADB78351.1| DNA gyrase [Bacillus sp. B-51199]
 gi|284154512|gb|ADB78357.1| DNA gyrase [Bacillus sp. B-51205]
 gi|284154530|gb|ADB78366.1| DNA gyrase [Bacillus sp. B-51214]
          Length = 189

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 100/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|284154560|gb|ADB78381.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D+ D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYHDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|219920999|emb|CAQ76677.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921001|emb|CAQ76678.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921003|emb|CAQ76679.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921005|emb|CAQ76680.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921007|emb|CAQ76681.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921013|emb|CAQ76684.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921015|emb|CAQ76685.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921017|emb|CAQ76686.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921019|emb|CAQ76687.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921021|emb|CAQ76688.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/131 (59%), Positives = 104/131 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATSIPSH 194
           AVGMAT+IP H
Sbjct: 121 AVGMATNIPPH 131


>gi|28865600|emb|CAD48114.1| topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 165

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 120/165 (72%), Gaps = 1/165 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPK 165


>gi|11863189|gb|AAD43654.2| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 143

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/143 (48%), Positives = 101/143 (70%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+
Sbjct: 1   LKPVQRRILFAMHSSGNTYDKNFRKSAKTVGDVIGQYHPHGDLSVYGAMVRLSQDWKLRH 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            LI   GN G+ID D  AA RYTEA+++Q++E +++ ++++ V F   Y++   EP+V P
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVAFVPNYDDTTLEPMVLP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIP 192
           ++FPNLL NG++GI+ G AT IP
Sbjct: 121 ARFPNLLVNGSTGISSGYATDIP 143


>gi|34451803|gb|AAQ72397.1| GyrA [Klebsiella variicola]
 gi|34451805|gb|AAQ72398.1| GyrA [Klebsiella variicola]
 gi|34451807|gb|AAQ72399.1| GyrA [Klebsiella variicola]
          Length = 130

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/130 (60%), Positives = 101/130 (77%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIA
Sbjct: 61  SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIA 120

Query: 185 VGMATSIPSH 194
           VGMAT+IP H
Sbjct: 121 VGMATNIPPH 130


>gi|117654325|gb|ABK55593.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 189

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 98/188 (52%), Positives = 137/188 (72%), Gaps = 1/188 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQ 278
           TE+PYQV 
Sbjct: 180 TELPYQVN 187


>gi|117654323|gb|ABK55592.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 187

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 98/188 (52%), Positives = 137/188 (72%), Gaps = 1/188 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQ 278
           TE+PYQV 
Sbjct: 180 TELPYQVN 187


>gi|110451856|gb|ABG74482.1| mutant ParC [Neisseria gonorrhoeae]
          Length = 125

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 72/125 (57%), Positives = 94/125 (75%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y +S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HP
Sbjct: 1   AYLEYPMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  ++
Sbjct: 61  HGDNSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEIN 120

Query: 149 EDAVD 153
           +  V+
Sbjct: 121 QGTVE 125


>gi|15787866|dbj|BAB68536.1| topoisomerase IV [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 131

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 68/129 (52%), Positives = 94/129 (72%), Gaps = 1/129 (0%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR V
Sbjct: 1   LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++
Sbjct: 61  GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 120

Query: 139 VAELILQGV 147
            AEL+L  +
Sbjct: 121 YAELLLSEL 129


>gi|49532791|dbj|BAD26633.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/132 (54%), Positives = 101/132 (76%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDISVYDAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V P+
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 171 KFPNLLANGTSG 182
           K P LL NG +G
Sbjct: 121 KVPTLLINGATG 132


>gi|297242233|gb|ADI24789.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/182 (45%), Positives = 123/182 (67%), Gaps = 1/182 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           +KS R V +  GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   QKSGRAVRDGFGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG   
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVI 180

Query: 252 VR 253
           V 
Sbjct: 181 VC 182


>gi|34451813|gb|AAQ72402.1| GyrA [Enterobacter sp. B5R5]
          Length = 130

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/130 (59%), Positives = 102/130 (78%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE R+ ++A  ++  ++++ VD+ D Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 61  SAAAMRYTEIRLAKIAHELMADLEKETVDYVDNYDGTERIPDVMPTKIPNLLVNGSSGIA 120

Query: 185 VGMATSIPSH 194
           VGMAT+IP H
Sbjct: 121 VGMATNIPPH 130


>gi|323575321|dbj|BAJ78200.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575323|dbj|BAJ78201.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575325|dbj|BAJ78202.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575327|dbj|BAJ78203.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575329|dbj|BAJ78204.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575331|dbj|BAJ78205.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575333|dbj|BAJ78206.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575335|dbj|BAJ78207.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575337|dbj|BAJ78208.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575339|dbj|BAJ78209.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575341|dbj|BAJ78210.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575345|dbj|BAJ78212.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575347|dbj|BAJ78213.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575349|dbj|BAJ78214.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575351|dbj|BAJ78215.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 132

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 84/132 (63%), Positives = 107/132 (81%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNF
Sbjct: 1   YAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL N
Sbjct: 61  GSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLN 120

Query: 179 GTSGIAVGMATS 190
           G+SGIAVGMAT+
Sbjct: 121 GSSGIAVGMATN 132


>gi|219921009|emb|CAQ76682.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921011|emb|CAQ76683.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 78/131 (59%), Positives = 104/131 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATSIPSH 194
           AVGMAT+IP H
Sbjct: 121 AVGMATNIPPH 131


>gi|60678998|gb|AAX33780.1| topoisomerase IV subunit A [Mycoplasma synoviae]
 gi|60679000|gb|AAX33781.1| topoisomerase IV subunit A [Mycoplasma synoviae]
          Length = 170

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 76/165 (46%), Positives = 108/165 (65%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M  +GL    AFKKSAR+VG+VIGK HPHGD S+Y++L+R+AQ +    PL+   GN
Sbjct: 6   LYSMWMLGLKNDKAFKKSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGN 65

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
            G+ID D AAA RYTE R+  V  L+L+ +++  V+F   +++ + EPVV P  FPNLL 
Sbjct: 66  KGSIDDDPAAAMRYTETRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLV 125

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
           NGT GIA G AT IP HN+ E+ +A +  + N      K+ + I 
Sbjct: 126 NGTKGIASGFATDIPPHNLAELIDACIEKLKNKATPYSKIRQIIK 170


>gi|219921023|emb|CAQ76689.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 77/131 (58%), Positives = 103/131 (78%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SG 
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGX 120

Query: 184 AVGMATSIPSH 194
           AVGMAT+IP H
Sbjct: 121 AVGMATNIPPH 131


>gi|238810376|dbj|BAH70162.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810378|dbj|BAH70163.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810380|dbj|BAH70164.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810382|dbj|BAH70165.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810384|dbj|BAH70166.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810386|dbj|BAH70167.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810388|dbj|BAH70168.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810390|dbj|BAH70169.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810392|dbj|BAH70170.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810394|dbj|BAH70171.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810396|dbj|BAH70172.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810398|dbj|BAH70173.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810400|dbj|BAH70174.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810402|dbj|BAH70175.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810404|dbj|BAH70176.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810406|dbj|BAH70177.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810408|dbj|BAH70178.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810410|dbj|BAH70179.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810412|dbj|BAH70180.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810414|dbj|BAH70181.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810416|dbj|BAH70182.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810418|dbj|BAH70183.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810420|dbj|BAH70184.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810422|dbj|BAH70185.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810424|dbj|BAH70186.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810426|dbj|BAH70187.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810428|dbj|BAH70188.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810430|dbj|BAH70189.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810432|dbj|BAH70190.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810434|dbj|BAH70191.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810436|dbj|BAH70192.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810438|dbj|BAH70193.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810440|dbj|BAH70194.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810442|dbj|BAH70195.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810444|dbj|BAH70196.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810446|dbj|BAH70197.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810448|dbj|BAH70198.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810450|dbj|BAH70199.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810452|dbj|BAH70200.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810454|dbj|BAH70201.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810456|dbj|BAH70202.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810458|dbj|BAH70203.1| topoisomerase IV subunit A [Mannheimia haemolytica]
          Length = 136

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 69/136 (50%), Positives = 100/136 (73%), Gaps = 1/136 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE++++++AE++L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPA 120

Query: 171 KFPNLLANGTSGIAVG 186
           + P++L NGT GIAVG
Sbjct: 121 RLPHILLNGTMGIAVG 136


>gi|33469558|gb|AAQ19804.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 136

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/136 (45%), Positives = 97/136 (71%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD++VR++
Sbjct: 1   LPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDFSIYDAMVRMS 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   +++ +
Sbjct: 61  QDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTE 120

Query: 163 SEPVVFPSKFPNLLAN 178
            EP V P+ FPNLL N
Sbjct: 121 KEPTVLPAAFPNLLVN 136


>gi|225550344|ref|ZP_03771293.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379498|gb|EEH01860.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 143

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/139 (46%), Positives = 97/139 (69%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDE 149
           YTE R++++A ++L  + +
Sbjct: 122 YTETRLSKIASVMLTNLKK 140


>gi|269148270|gb|ACZ28506.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148290|gb|ACZ28516.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148292|gb|ACZ28517.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148300|gb|ACZ28521.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148344|gb|ACZ28543.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148346|gb|ACZ28544.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148364|gb|ACZ28553.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148366|gb|ACZ28554.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148372|gb|ACZ28557.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148380|gb|ACZ28561.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148382|gb|ACZ28562.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148384|gb|ACZ28563.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148386|gb|ACZ28564.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148396|gb|ACZ28569.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148432|gb|ACZ28587.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 115

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 93/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|284154452|gb|ADB78327.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154454|gb|ADB78328.1| DNA gyrase [Bacillus sp. B-51174]
          Length = 189

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 98/190 (51%), Positives = 138/190 (72%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G G FG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGKFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|49532809|dbj|BAD26642.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/132 (53%), Positives = 100/132 (75%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYYAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V P+
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 171 KFPNLLANGTSG 182
           K P LL NG +G
Sbjct: 121 KVPTLLINGATG 132


>gi|16041050|dbj|BAB69702.1| topoisomerase IV [Salmonella paratyphi]
          Length = 126

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 68/126 (53%), Positives = 93/126 (73%), Gaps = 1/126 (0%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR V
Sbjct: 1   LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++
Sbjct: 61  GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 120

Query: 139 VAELIL 144
            AEL+L
Sbjct: 121 YAELLL 126


>gi|330980279|gb|EGH78415.1| DNA gyrase subunit A [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 118

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 90/115 (78%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AA
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAA 118


>gi|323575343|dbj|BAJ78211.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 132

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 83/132 (62%), Positives = 106/132 (80%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNF
Sbjct: 1   YAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL N
Sbjct: 61  GSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLN 120

Query: 179 GTSGIAVGMATS 190
           G+SGIAVG AT+
Sbjct: 121 GSSGIAVGRATN 132


>gi|83777805|gb|ABC47039.1| gyrase A subunit [Yersinia enterocolitica]
          Length = 107

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/107 (64%), Positives = 87/107 (81%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           HGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 107


>gi|269148416|gb|ACZ28579.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148422|gb|ACZ28582.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148444|gb|ACZ28593.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148446|gb|ACZ28594.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Bonn]
 gi|294765294|gb|ADF35684.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 92/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|219921027|emb|CAQ76691.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/136 (57%), Positives = 103/136 (75%), Gaps = 5/136 (3%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
            AM      +  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   WAM-----IWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNF 55

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGDSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 56  GSVDGDSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 115

Query: 179 GTSGIAVGMATSIPSH 194
           G+SGIAVGMAT+IP H
Sbjct: 116 GSSGIAVGMATNIPPH 131


>gi|218134383|ref|ZP_03463187.1| hypothetical protein BACPEC_02277 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989768|gb|EEC55779.1| hypothetical protein BACPEC_02277 [Bacteroides pectinophilus ATCC
           43243]
          Length = 511

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 85/436 (19%), Positives = 176/436 (40%), Gaps = 28/436 (6%)

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+  F + M  L     P+V+ L  +L  +L H++EV+ RR+ + +   + R  IL+GL+
Sbjct: 1   MQDTFGVIMLALVD-NQPKVLNLLDMLIYYLRHQKEVITRRTQYDLNKAEERAHILQGLM 59

Query: 395 IAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           IA  NID +I+IIR  +  +     ++  F L++ Q  AI+++RLR+L  LE  ++++E 
Sbjct: 60  IALDNIDRVISIIRGSENVQTAKESLMKEFELSDVQAQAIVDMRLRALTGLERAKLEAEY 119

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L+ + E+  ++L   K+    I  EI  + + +        RRT+       +     
Sbjct: 120 AELIKKIEEYKAILADEKKLLGVIRTEILVIADKYGD-----DRRTSIG---FDEFDISM 171

Query: 512 QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  EP+ +  +N G+I+ +              +  +   + D ++      +   +
Sbjct: 172 EDIIPDEPVVIARTNLGYIKRMTLDNFKAQHRGGKGIRGMQTIDQDYIEDLFMTTSHHYL 231

Query: 564 LLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           +  +  G+AY + A  +        G A+  L+ L   + I        Y+    L + +
Sbjct: 232 MFFTNTGRAYRMKAYEIPEAGRTARGTAVINLLQLQPGETITAVIPIREYNDNNYLFMAT 291

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
             G     + +E     + G   + +   +++  V        + +V +    + F    
Sbjct: 292 RNGIVKKTKVTEYSNIRKNGIQAITIRDNDELIEVKLTDDTKDIMLVTKLGMCIRFKETD 351

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +    R   GV      D      +     +G + +  + +   +           RGG 
Sbjct: 352 VRPTGRTSMGVIGMDLMDEDQVVGMQI-DSQGDSLLIVSEKGLGKRTLIEEFTTQHRGGK 410

Query: 737 GSLVPKGFPRSGKFLS 752
           G    K   ++G  + 
Sbjct: 411 GVKCYKINEKTGNVVG 426



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               + A+  ++ D L        T  I+L++  G        ++  
Sbjct: 295 IVKKTKVTEYSNIRKNGIQAITIRDNDELIEVKLTDDTKDIMLVTKLGMCIRFKETDVRP 354

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +  + DL     +V   +      LL+VS KG        E     R GK   
Sbjct: 355 TGRTSMGVIGM-DLMDEDQVVGMQIDSQGDSLLIVSEKGLGKRTLIEEFTTQHRGGKGVK 413

Query: 643 KVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
                EK   +  V  V     + ++     ++      I  + R   GV+L + +DG  
Sbjct: 414 CYKINEKTGNVVGVKAVDDTREIMLITTEGIIIRIKAQDISILGRITSGVKLINLEDGVT 473

Query: 698 SDVIC 702
              + 
Sbjct: 474 VASVS 478


>gi|238810460|dbj|BAH70204.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810462|dbj|BAH70205.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810464|dbj|BAH70206.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810466|dbj|BAH70207.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810468|dbj|BAH70208.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810470|dbj|BAH70209.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810472|dbj|BAH70210.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810474|dbj|BAH70211.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810476|dbj|BAH70212.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810478|dbj|BAH70213.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810480|dbj|BAH70214.1| topoisomerase IV subunit A [Mannheimia haemolytica]
          Length = 136

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 69/136 (50%), Positives = 100/136 (73%), Gaps = 1/136 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE++++++AE++L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPA 120

Query: 171 KFPNLLANGTSGIAVG 186
           + P++L NGT GIAVG
Sbjct: 121 RLPHILLNGTMGIAVG 136


>gi|11761820|gb|AAG40200.1|AF303589_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761826|gb|AAG40203.1|AF303592_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761828|gb|AAG40204.1|AF303593_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761830|gb|AAG40205.1|AF303594_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761832|gb|AAG40206.1|AF303595_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761836|gb|AAG40208.1|AF303597_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761838|gb|AAG40209.1|AF303598_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761842|gb|AAG40211.1|AF303600_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761846|gb|AAG40213.1|AF303602_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761854|gb|AAG40217.1|AF303606_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761856|gb|AAG40218.1|AF303607_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761880|gb|AAG40230.1|AF303619_1 DNA gyrase subunit A [Klebsiella pneumoniae subsp. ozaenae]
 gi|11761882|gb|AAG40231.1|AF303620_1 DNA gyrase subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis]
 gi|82654968|emb|CAJ19550.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654970|emb|CAJ19551.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654972|emb|CAJ19552.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654974|emb|CAJ19553.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654976|emb|CAJ19554.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654978|emb|CAJ19555.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654980|emb|CAJ19556.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654982|emb|CAJ19557.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654984|emb|CAJ19558.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654986|emb|CAJ19559.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654988|emb|CAJ19560.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654990|emb|CAJ19561.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654992|emb|CAJ19562.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654994|emb|CAJ19563.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654996|emb|CAJ19564.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654998|emb|CAJ19565.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655000|emb|CAJ19566.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655002|emb|CAJ19567.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655004|emb|CAJ19568.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655006|emb|CAJ19569.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655008|emb|CAJ19570.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655010|emb|CAJ19571.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655012|emb|CAJ19572.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655014|emb|CAJ19573.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 99/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|284154626|gb|ADB78414.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 96/190 (50%), Positives = 131/190 (68%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I  +   GRG    RA+  +E    G   I V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRXAXESGRGSITXRAKAEIEXTSSGKERIXV 179

Query: 271 TEIPYQVQKS 280
           TE P  V K+
Sbjct: 180 TEFPXXVXKA 189


>gi|313192089|emb|CBX19904.1| gyrase A [Clostridium perfringens]
          Length = 286

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 122/288 (42%), Positives = 187/288 (64%), Gaps = 3/288 (1%)

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y 
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYE 119

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDE
Sbjct: 120 TGKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDE 178

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R  +P++ +  ++  + M+  F + M  L     PQV+ L  +L  +
Sbjct: 179 SDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQVLNLKQVLVHY 237

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           +  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 INFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 285


>gi|328947272|ref|YP_004364609.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema succinifaciens DSM
           2489]
 gi|328447596|gb|AEB13312.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema succinifaciens DSM
           2489]
          Length = 659

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 132/626 (21%), Positives = 235/626 (37%), Gaps = 59/626 (9%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           ++   ++ ++ YA   I++RAIPDL DG KPV RRI   M  +         K A +VG+
Sbjct: 4   IKNLFDKNFIEYASYVIRDRAIPDLEDGLKPVQRRI---MHTLFNIDDGRMHKVASVVGD 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            + K HPHGD S+  +LV LA     +   I  QGNFGN+  GD+A+A RY E  +  +A
Sbjct: 61  CM-KFHPHGDASIGAALVVLA----NKEIFIQRQGNFGNLYTGDTASASRYIECCVHPLA 115

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           +  L   + +  ++  +Y+    EPV F +K P +L  G  GIAVGM+T I  +N++E+ 
Sbjct: 116 KKFLY--NPNITEYVPSYDGRSKEPVAFRAKIPVVLLGGAEGIAVGMSTKILPYNIKEVL 173

Query: 201 EA-ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +A   AL   P         + I PD PTGG++  S      +Y  G G    RA++ + 
Sbjct: 174 DAEIKALRGEP---------FEIYPDSPTGGLMDVS------NYNDGNGKIITRAKFDLS 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       IV+TE+P +     L++ I     A +I +       +      +     R 
Sbjct: 219 DEK----KIVITELPLETTSKDLLDSIDAAYKAGKIKISSVEDFTTDH--CNIEIKLPRG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    + ++++  +  E        ++    +P  M    I+K +      ++     F 
Sbjct: 273 VYSKDVEKALYAYTSCEKSIACQ-MLVIKDNMPVAMTATEIIKYYAKKLTGIIKDELEFE 331

Query: 380 MQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------FSLTENQVD 429
             ++   +     + + I       I  +   E   K V              +T+  V+
Sbjct: 332 RGSLTEELHQRTLERIFIEERIYKSIEQMKTAESVNKAVKDGFVPFKDELIRDVTDEDVE 391

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +L + +R +   +  + + ++  +    ++I   L        +    I +  + FS +
Sbjct: 392 KLLKIPIRRISLFDINKNRDQVKAINERLKEIARRLKHLTDCAVEYLDGILDELKKFS-A 450

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
            D  +  T         +  +           V        +       D         +
Sbjct: 451 LDPKQDHTAISPALLERQTKITSFSAVDVKQIV--------QRDTPLRYDEKGYLGTSVN 502

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             +  L     DRIL++   G        + L                 ++ + T    D
Sbjct: 503 GGREILKVTPFDRILIVRKSGLWSVCDVPDKLFVDSGIWFCNYADKDIISKILFTIIYRD 562

Query: 610 STCKLLVVSSKGNAFIVEESEIIANT 635
              K               S  I N 
Sbjct: 563 PKTKYCF------IKRCRISGWIMNR 582


>gi|313192099|emb|CBX19909.1| gyrase A [Clostridium perfringens]
          Length = 288

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 121/288 (42%), Positives = 187/288 (64%), Gaps = 3/288 (1%)

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y 
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYE 119

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDE
Sbjct: 120 TGKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDE 178

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  +
Sbjct: 179 SDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHY 237

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           +  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 INFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 285


>gi|269148354|gb|ACZ28548.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 115

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 93/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|269148348|gb|ACZ28545.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|269148352|gb|ACZ28547.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 115

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 93/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 115


>gi|269148258|gb|ACZ28500.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148262|gb|ACZ28502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148264|gb|ACZ28503.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148266|gb|ACZ28504.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148268|gb|ACZ28505.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148272|gb|ACZ28507.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148276|gb|ACZ28509.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148280|gb|ACZ28511.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148282|gb|ACZ28512.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148284|gb|ACZ28513.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148288|gb|ACZ28515.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148294|gb|ACZ28518.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148306|gb|ACZ28524.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148310|gb|ACZ28526.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148314|gb|ACZ28528.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148318|gb|ACZ28530.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148322|gb|ACZ28532.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148324|gb|ACZ28533.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148326|gb|ACZ28534.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148334|gb|ACZ28538.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148370|gb|ACZ28556.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148374|gb|ACZ28558.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148376|gb|ACZ28559.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148390|gb|ACZ28566.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148392|gb|ACZ28567.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148394|gb|ACZ28568.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148398|gb|ACZ28570.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148400|gb|ACZ28571.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148404|gb|ACZ28573.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148408|gb|ACZ28575.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148418|gb|ACZ28580.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148420|gb|ACZ28581.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148424|gb|ACZ28583.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148426|gb|ACZ28584.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148428|gb|ACZ28585.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148430|gb|ACZ28586.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148440|gb|ACZ28591.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148450|gb|ACZ28596.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148452|gb|ACZ28597.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148454|gb|ACZ28598.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|294765303|gb|ADF35686.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 93/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|184161295|gb|ACC68679.1| ParC [Escherichia coli]
          Length = 128

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 67/127 (52%), Positives = 93/127 (73%), Gaps = 1/127 (0%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR V
Sbjct: 2   LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTV 61

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++
Sbjct: 62  GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 121

Query: 139 VAELILQ 145
            +EL+L 
Sbjct: 122 YSELLLS 128


>gi|313192091|emb|CBX19905.1| gyrase A [Clostridium perfringens]
          Length = 288

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 120/287 (41%), Positives = 186/287 (64%), Gaps = 3/287 (1%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYET 119

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 120 GKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 178

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++
Sbjct: 179 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYV 237

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
             +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 NFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 284


>gi|269302504|gb|ACZ32604.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila pneumoniae
           LPCoLN]
          Length = 478

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 122/504 (24%), Positives = 201/504 (39%), Gaps = 42/504 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +       ++ YA   I ERAIP + DG KPV RR++  +    L       K A I G
Sbjct: 3   DVSELFRTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLF---LMDDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGYLIDTQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L   + D + F D+Y+  + EP + P+K P LL +G  GIAVGM T I  HN  E+
Sbjct: 115 ARETL--FNTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +A++++ +        + + PDFP+GG++  S       Y+ G G   +RA   + 
Sbjct: 173 LKAQIAILNDKK--------FTVFPDFPSGGLMDPSE------YQDGLGSITLRASIDII 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +VV +I  Q     LI  I        I +  D   + + DV  +     + 
Sbjct: 219 NDKT----LVVKQICPQSTTETLIRSIENAAKRGTIKI--DTIQDFSTDVPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
                ++  +F  ++ +         +     P    +  ILK      +  L +     
Sbjct: 273 SRAKEMLPLLFEHTECQVILYSK-PTVIYENKPVECSISEILKLHTTALQGYLEKELLLL 331

Query: 380 MQAIDRRVEILKGLLIAYLNI--------DEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            + +           I   +           I   I  +D  + V+ +           +
Sbjct: 332 QEQLTLDHHHKTLEYIFIKHKLYDSVREALAINKKISADDLHQAVLHALEPWLHELATPV 391

Query: 432 LNLRLRSLRKLEEYQI-KSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIFSKS 489
                  L  L   +I     +    E   I+    + ++   +I    ++ +K +  + 
Sbjct: 392 TKQDTSQLASLTIKKILCFNEEACTKELLAIEKKQAAIQKDLGRIKEVTVKYLKGLLERH 451

Query: 490 TDLGRRRTTFCEVSRADKATLQQA 513
             LG R+T       A  + L+Q 
Sbjct: 452 GHLGERKTQITNFKTAKTSILKQQ 475


>gi|269148286|gb|ACZ28514.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148330|gb|ACZ28536.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|269148338|gb|ACZ28540.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148340|gb|ACZ28541.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148412|gb|ACZ28577.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|294765300|gb|ADF35685.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 93/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|259157367|gb|ACV96843.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 129

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/129 (58%), Positives = 98/129 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP 
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPP 120

Query: 194 HNVQEICEA 202
           HN+ E+   
Sbjct: 121 HNLTEVING 129


>gi|15618626|ref|NP_224912.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae CWL029]
 gi|16752324|ref|NP_444582.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae AR39]
 gi|33242075|ref|NP_877016.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
 gi|4377020|gb|AAD18855.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae CWL029]
 gi|7188969|gb|AAF37925.1| DNA gyrase, subunit A [Chlamydophila pneumoniae AR39]
 gi|33236585|gb|AAP98673.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
          Length = 478

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 124/504 (24%), Positives = 209/504 (41%), Gaps = 42/504 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +       ++ YA   I ERAIP + DG KPV RR++  +    L       K A I G
Sbjct: 3   DVSELFRTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLF---LMDDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGYLIDTQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L   + D + F D+Y+  + EP + P+K P LL +G  GIAVGM T I  HN  E+
Sbjct: 115 ARETL--FNTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +A++++ +        + + PDFP+GG++  S       Y+ G G   +RA   + 
Sbjct: 173 LKAQIAILNDKK--------FTVFPDFPSGGLMDPSE------YQDGLGSITLRASIDII 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +VV +I  Q     LI  I        I +  D   + + DV  +     + 
Sbjct: 219 NDKT----LVVKQICPQSTTETLIRSIENAAKRGTIKI--DTIQDFSTDVPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA-----HRREVLFR 374
                ++  +F  ++ +         +     P    +  ILK           +E+L  
Sbjct: 273 SRAKEMLPLLFEHTECQVILYSK-PTVIYENKPVECSISEILKLHTTALQGYLEKELLLL 331

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEII---AIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +    +    + +E +      Y ++ E++     I  +D  + V+ +           +
Sbjct: 332 QEQLTLDHYHKTLEYIFIKHKLYDSVREVLAINKKISADDLHQAVLHALEPWLHELATPV 391

Query: 432 LNLRLRSLRKLEEYQI-KSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIFSKS 489
                  L  L   +I     +    E   I+    + ++   +I    ++ +K +  + 
Sbjct: 392 TKQDTSQLASLTIKKILCFNEEACTKELLAIEKKQAAIQKDLGRIKEVTVKYLKGLLERH 451

Query: 490 TDLGRRRTTFCEVSRADKATLQQA 513
             LG R+T       A  + L+Q 
Sbjct: 452 GHLGERKTQITNFKTAKTSILKQQ 475


>gi|313192097|emb|CBX19908.1| gyrase A [Clostridium perfringens]
          Length = 285

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 120/287 (41%), Positives = 186/287 (64%), Gaps = 3/287 (1%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYET 119

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 120 GKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 178

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++
Sbjct: 179 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYI 237

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
             +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 NFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 284


>gi|11761822|gb|AAG40201.1|AF303590_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761840|gb|AAG40210.1|AF303599_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761874|gb|AAG40227.1|AF303616_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761876|gb|AAG40228.1|AF303617_1 DNA gyrase subunit A [Raoultella terrigena]
 gi|11761878|gb|AAG40229.1|AF303618_1 DNA gyrase subunit A [Raoultella ornithinolytica]
 gi|11761884|gb|AAG40232.1|AF303621_1 DNA gyrase subunit A [Raoultella planticola]
          Length = 127

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 101/127 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|298498650|ref|ZP_07008457.1| DNA gyrase, subunit A [Vibrio cholerae MAK 757]
 gi|297542983|gb|EFH79033.1| DNA gyrase, subunit A [Vibrio cholerae MAK 757]
          Length = 595

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 109/513 (21%), Positives = 181/513 (35%), Gaps = 71/513 (13%)

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++ HRR
Sbjct: 1   MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFVDHRR 59

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------- 415
           EV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P                
Sbjct: 60  EVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGN 119

Query: 416 -----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                  +   ++ LTE Q  AIL+LRL  L  LE  +I  E  
Sbjct: 120 VAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYK 179

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            LL E   +  +L S ++    I  E+  ++  FS +        T         A    
Sbjct: 180 QLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDV 239

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            +       V         + +      SA   KE D ++  L A+T D ILL ST GK 
Sbjct: 240 VVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKT 299

Query: 573 YTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G      
Sbjct: 300 YRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTS 359

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--------- 677
             +       G   L +  E+ +  V    G+  + +  +  K++ F   +         
Sbjct: 360 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 419

Query: 678 ----------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
                           +  M R   GVR     DG     +     EG   +      Y 
Sbjct: 420 QPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTENGYG 478

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +        RG  G +  K   R+G  + +
Sbjct: 479 KRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 511


>gi|11761824|gb|AAG40202.1|AF303591_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761844|gb|AAG40212.1|AF303601_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761858|gb|AAG40219.1|AF303608_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|60416654|emb|CAI43396.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416656|emb|CAI43397.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416660|emb|CAI43399.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416662|emb|CAI43400.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416664|emb|CAI43401.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416666|emb|CAI43402.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416668|emb|CAI43403.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416670|emb|CAI43404.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416672|emb|CAI43405.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416674|emb|CAI43406.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416676|emb|CAI43407.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416678|emb|CAI43408.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416680|emb|CAI43409.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416684|emb|CAI43411.1| DNA gyrase, subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 101/127 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|313192119|emb|CBX19919.1| gyrase A [Clostridium perfringens]
          Length = 289

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 121/287 (42%), Positives = 186/287 (64%), Gaps = 3/287 (1%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYET 119

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 120 GKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 178

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P++ +  ++  + M+  F + M  L     PQV+ L  +L  ++
Sbjct: 179 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQVLNLKQVLVHYI 237

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
             +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 NFQKDVITRRTRFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 284


>gi|313192103|emb|CBX19911.1| gyrase A [Clostridium perfringens]
          Length = 282

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 120/285 (42%), Positives = 186/285 (65%), Gaps = 3/285 (1%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYET 119

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 120 GKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 178

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++
Sbjct: 179 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYI 237

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+ 
Sbjct: 238 NFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSS 282


>gi|18874556|gb|AAL79843.1|AF473701_1 DNA topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida]
          Length = 134

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 69/134 (51%), Positives = 96/134 (71%), Gaps = 1/134 (0%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
            RRII+AMSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ 
Sbjct: 1   QRRIIYAMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVD 60

Query: 114 GQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
           GQGN+G  D   S AA RYTEAR+++ +EL+L  + +  VD+   ++    EPVV P++ 
Sbjct: 61  GQGNWGAPDDPKSFAAMRYTEARLSRFSELLLSELGQGTVDWTPNFDGTMKEPVVLPARL 120

Query: 173 PNLLANGTSGIAVG 186
           P++L NG +GIAVG
Sbjct: 121 PHILLNGITGIAVG 134


>gi|15836248|ref|NP_300772.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae J138]
 gi|8979088|dbj|BAA98923.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
          Length = 478

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 125/507 (24%), Positives = 210/507 (41%), Gaps = 48/507 (9%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +       ++ YA   I ERAIP + DG KPV RR++  +    L       K A I G
Sbjct: 3   DVSELFRTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLF---LMDDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGYLIDTQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L   + D + F D+Y+  + EP + P+K P LL +G  GIAVGM T I  HN  E+
Sbjct: 115 ARETL--FNTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +A++++ +        + + PDFP+GG++  S       Y+ G G   +RA   + 
Sbjct: 173 LKAQIAILNDKK--------FTVFPDFPSGGLMDPSE------YQDGLGSITLRASIDII 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +VV +I  Q     LI  I        I +  D   + + DV  +     + 
Sbjct: 219 NDKT----LVVKQICPQSTTETLIRSIENAAKRGTIKI--DTIQDFSTDVPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA-----HRREVLFR 374
                ++  +F  ++ +         +     P    +  ILK           +E+L  
Sbjct: 273 SRAKEMLPLLFEHTECQVILYSK-PTVIYENKPVECSISEILKLHTTALQGYLEKELLLL 331

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL--------TEN 426
           +    +    + +E +      Y ++ E++AI +             +L        T  
Sbjct: 332 QEQLTLDHYHKTLEYIFIKHKLYDSVREVLAINKKISADDLHQAVLHALEPWLHELATPV 391

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
                  L   +++K+  +  ++    LLA ++K  ++     +        ++ + E  
Sbjct: 392 TKQDTSQLASLTIKKILCFNEEACTKELLAIEKKQAAIQKDLGRLKEVTVKYLKGLLERH 451

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQA 513
                LG R+T       A  + L+Q 
Sbjct: 452 G---HLGERKTQITNFKTAKTSILKQQ 475


>gi|269148406|gb|ACZ28574.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148414|gb|ACZ28578.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148442|gb|ACZ28592.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|294765306|gb|ADF35687.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 93/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|313192101|emb|CBX19910.1| gyrase A [Clostridium perfringens]
          Length = 279

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 118/281 (41%), Positives = 183/281 (65%), Gaps = 3/281 (1%)

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y 
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYE 119

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDE
Sbjct: 120 TGKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDE 178

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  +
Sbjct: 179 SDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHY 237

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           +  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I 
Sbjct: 238 INFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVIN 278


>gi|172073096|gb|ACB71405.1| ParC [Escherichia coli]
          Length = 130

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/129 (51%), Positives = 95/129 (73%), Gaps = 1/129 (0%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR
Sbjct: 2   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 61

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARM 136
            VG+V+GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+
Sbjct: 62  TVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 121

Query: 137 TQVAELILQ 145
           ++ +EL+L 
Sbjct: 122 SKYSELLLS 130


>gi|269148308|gb|ACZ28525.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 115

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 92/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF   Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVGNYDG 115


>gi|269148260|gb|ACZ28501.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148274|gb|ACZ28508.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148278|gb|ACZ28510.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148298|gb|ACZ28520.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148304|gb|ACZ28523.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148312|gb|ACZ28527.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148316|gb|ACZ28529.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148320|gb|ACZ28531.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148328|gb|ACZ28535.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148332|gb|ACZ28537.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148336|gb|ACZ28539.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148342|gb|ACZ28542.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148350|gb|ACZ28546.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Bonn]
 gi|269148356|gb|ACZ28549.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148360|gb|ACZ28551.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148362|gb|ACZ28552.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148368|gb|ACZ28555.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148388|gb|ACZ28565.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148402|gb|ACZ28572.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148410|gb|ACZ28576.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148434|gb|ACZ28588.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148436|gb|ACZ28589.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148438|gb|ACZ28590.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148448|gb|ACZ28595.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|294765291|gb|ADF35683.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 92/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|11761862|gb|AAG40221.1|AF303610_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 99/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|11761850|gb|AAG40215.1|AF303604_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 99/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|172073100|gb|ACB71407.1| ParC [Escherichia coli]
          Length = 130

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 67/129 (51%), Positives = 94/129 (72%), Gaps = 1/129 (0%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR
Sbjct: 2   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNTSAKFKKSAR 61

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARM 136
            VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+
Sbjct: 62  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 121

Query: 137 TQVAELILQ 145
           ++ +EL+L 
Sbjct: 122 SKYSELLLS 130


>gi|269148378|gb|ACZ28560.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 115

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 92/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSA A RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSATAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|154362219|gb|ABS80937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 116

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 66/116 (56%), Positives = 92/116 (79%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 116


>gi|166154877|ref|YP_001653132.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|165930865|emb|CAP06427.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 490

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 113/495 (22%), Positives = 200/495 (40%), Gaps = 42/495 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   D     F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++          + + PDFP+GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILND--------QPFSLLPDFPSGGTMDASD------YQDGLGSIVLRATIDII 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I        I +  D   + + D+  +     + 
Sbjct: 219 NDKT----LLIKEICPSTTTETLIRSIENAAKRGIIKI--DSIQDFSTDLPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +               P    +  IL+      +  L +     
Sbjct: 273 IHAKDLLRPLYTHTECQVILTSR-PTAIYQGKPWETTISEILRLQTETLQNYLKKELLIL 331

Query: 380 MQAIDRRVE--ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             ++ R +    L+ L I +   D + +++              ++ E     +  L   
Sbjct: 332 EDSLSRELYHKTLECLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAP 391

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE--------VKEIFSKS 489
             +   +    +    L  ++   +  L   +++ + +  ++ +        +K++    
Sbjct: 392 DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLETY 451

Query: 490 TDLGRRRTTFCEVSR 504
             LG R+T   +   
Sbjct: 452 RQLGHRKTKIAKFDD 466


>gi|313192113|emb|CBX19916.1| gyrase A [Clostridium perfringens]
          Length = 279

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 119/282 (42%), Positives = 184/282 (65%), Gaps = 3/282 (1%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYET 119

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 120 GKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 178

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++
Sbjct: 179 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYI 237

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
             +++V+ RR+ F +     R  IL+GL+IA  NIDE+I II
Sbjct: 238 NFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINII 279


>gi|172073098|gb|ACB71406.1| ParC [Escherichia coli]
          Length = 126

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 67/126 (53%), Positives = 92/126 (73%), Gaps = 1/126 (0%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR V
Sbjct: 1   LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++
Sbjct: 61  GDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 120

Query: 139 VAELIL 144
            +EL+L
Sbjct: 121 YSELLL 126


>gi|269148302|gb|ACZ28522.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
          Length = 115

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 65/115 (56%), Positives = 91/115 (79%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHR +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGLKPVHRSVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|11761848|gb|AAG40214.1|AF303603_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 99/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|269148296|gb|ACZ28519.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 115

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 92/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGTIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|296085402|emb|CBI29134.3| unnamed protein product [Vitis vinifera]
          Length = 160

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 66/109 (60%), Positives = 82/109 (75%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           +AYA+S +  RA+PD+RDG KPVHRRI+ AM E+GL     +KK AR+VGEV+GK HPHG
Sbjct: 1   MAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPYKKCARVVGEVLGKFHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           D +VYDSLVR+AQ F  R PLI G GNFG++D D  AA RYTE R+  +
Sbjct: 61  DTAVYDSLVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECRLEVI 109


>gi|11761852|gb|AAG40216.1|AF303605_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761868|gb|AAG40224.1|AF303613_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761872|gb|AAG40226.1|AF303615_1 DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  243 bits (621), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 101/127 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|297242277|gb|ADI24811.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
           +V GK HP GD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++++
Sbjct: 9   DVFGKFHPDGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKI 68

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP HN+ EI
Sbjct: 69  SEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEI 128

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG   VR
Sbjct: 129 ADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVIVR 182


>gi|219921029|emb|CAQ76692.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 127

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 74/127 (58%), Positives = 99/127 (77%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 1   ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 60

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 61  MSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 120

Query: 196 VQEICEA 202
           + E+   
Sbjct: 121 LTEVING 127


>gi|154362217|gb|ABS80936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 116

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 66/116 (56%), Positives = 93/116 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 116


>gi|219921025|emb|CAQ76690.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 124

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 76/124 (61%), Positives = 100/124 (80%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 1   AYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+
Sbjct: 61  YTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 120

Query: 191 IPSH 194
           IP H
Sbjct: 121 IPPH 124


>gi|255349048|ref|ZP_05381055.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 70]
 gi|255503586|ref|ZP_05381976.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 70s]
 gi|255507266|ref|ZP_05382905.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis D(s)2923]
          Length = 490

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 114/495 (23%), Positives = 200/495 (40%), Gaps = 42/495 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   D     F D+Y+  + EP V  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDVLAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++          + + PDFP+GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILND--------QPFSLFPDFPSGGTMDASD------YQAGLGSIVLRATIDII 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I        I +  D   + + D+  +     + 
Sbjct: 219 NDKT----LLIKEICPSTTTETLIRSIENAAKRGIIKI--DSIQDFSTDLPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +               P    +  IL+      +  L +     
Sbjct: 273 IHAKDLLRPLYTHTECQVILTSR-PTAIYQGKPWETTISEILRLQTETLQNYLKKELLIL 331

Query: 380 MQAIDRRVE--ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             ++ R +    L+ L I +   D + +++              ++ E     +  L   
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAP 391

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE--------VKEIFSKS 489
             +   +    +    L  ++   +  L   +++ + +  ++ +        +K++    
Sbjct: 392 DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLETY 451

Query: 490 TDLGRRRTTFCEVSR 504
             LG R+T   +   
Sbjct: 452 RQLGHRKTKIAKFDD 466


>gi|30841942|gb|AAP34703.1| DNA gyrase A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|30841950|gb|AAP34704.1| DNA gyrase A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 115

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 93/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF DTY+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDTYDG 115


>gi|166154002|ref|YP_001654120.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 434/Bu]
 gi|301335201|ref|ZP_07223445.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis L2tet1]
 gi|165929990|emb|CAP03473.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
          Length = 490

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 113/495 (22%), Positives = 200/495 (40%), Gaps = 42/495 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   D     F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++          + + PDFP+GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILND--------QPFSLLPDFPSGGTMDASD------YQDGLGSIVLRATIDII 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I        I +  D   + + D+  +     + 
Sbjct: 219 NDKT----LLIKEICPSTTTETLIRSIENAAKRGIIKI--DSIQDFSTDLPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +               P    +  IL+      +  L +     
Sbjct: 273 IHAKDLLRPLYTHTECQVILTSR-PTAIYQGKPWETTISEILRLQTETLQNYLKKELLIL 331

Query: 380 MQAIDRRVE--ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             ++ R +    L+ L I +   D + +++              ++ E     +  L   
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAP 391

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE--------VKEIFSKS 489
             +   +    +    L  ++   +  L   +++ + +  ++ +        +K++    
Sbjct: 392 DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLETY 451

Query: 490 TDLGRRRTTFCEVSR 504
             LG R+T   +   
Sbjct: 452 RQLGHRKTKIAKFDD 466


>gi|161705231|gb|ABX76740.1| ParC [Escherichia coli]
          Length = 134

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 67/134 (50%), Positives = 95/134 (70%), Gaps = 1/134 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQ 145
           TE+R+++ +EL+L 
Sbjct: 121 TESRLSKYSELLLS 134


>gi|11761870|gb|AAG40225.1|AF303614_1 DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/127 (58%), Positives = 100/127 (78%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYGTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|11761834|gb|AAG40207.1|AF303596_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761860|gb|AAG40220.1|AF303609_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761864|gb|AAG40222.1|AF303611_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/127 (58%), Positives = 99/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|15278103|gb|AAK94038.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 128

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/127 (56%), Positives = 90/127 (70%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D
Sbjct: 2   GFRPDRSHAKSARSVAEAMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGND 61

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIA
Sbjct: 62  PPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIA 121

Query: 185 VGMATSI 191
           VGMAT+I
Sbjct: 122 VGMATNI 128


>gi|15834656|ref|NP_296415.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Nigg]
 gi|270284821|ref|ZP_06194215.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Nigg]
 gi|270288850|ref|ZP_06195152.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Weiss]
 gi|301336201|ref|ZP_07224403.1| DNA topoisomerase IV subunit A [Chlamydia muridarum MopnTet14]
 gi|7190071|gb|AAF38922.1| DNA gyrase, subunit A [Chlamydia muridarum Nigg]
          Length = 490

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 112/496 (22%), Positives = 201/496 (40%), Gaps = 42/496 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   NISDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   D     F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +A++++          + + PDF +GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LKAQIAILND--------QPFSLFPDFASGGSMDASD------YQDGLGSIVLRATIDIV 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I        I +  D   + + D+  +     + 
Sbjct: 219 NDKT----LLIKEICPSTTTETLIRSIENAAKRGIIKI--DSIQDFSTDLPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L++ ++  ++ +               P    +  IL+      +  L +     
Sbjct: 273 VHAKDLLQPLYAHTECQVVLTSR-PTAIYQGKPWETSVSEILRLQTETLQSYLKKELLIL 331

Query: 380 MQAI-DRRVEIL-KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             ++         + L I +   D + A++          V   ++T+     +  L   
Sbjct: 332 EDSLTREHYHKTLEYLFIKHKLYDTVRAMLSKRKTSPSASVIHNAVTDALAPFLGTLPTP 391

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE--------VKEIFSKS 489
             +   +    +    L  ++   +  L S +++   +  ++ +        +K++    
Sbjct: 392 DKQATTQLASLTIKKILCFDENAYEKELLSLEKKRCNVQKDLGQLKKYTILYIKKLLDAY 451

Query: 490 TDLGRRRTTFCEVSRA 505
             LG R+T   +   A
Sbjct: 452 KHLGHRKTKIEKFEDA 467


>gi|28193541|emb|CAD56003.1| DNA gyrase [Proteus mirabilis]
          Length = 115

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 63/115 (54%), Positives = 88/115 (76%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+
Sbjct: 1   VHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
            GQGNFG++DGDSAAA RYTE RM ++A  +L  ++++ VDF   Y+  ++ P V
Sbjct: 61  DGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTENIPAV 115


>gi|60416658|emb|CAI43398.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416682|emb|CAI43410.1| DNA gyrase, subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/127 (58%), Positives = 100/127 (78%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYYTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|289525704|emb|CBJ15185.1| DNA gyrase subunit A [Chlamydia trachomatis Sweden2]
 gi|296435273|gb|ADH17451.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis E/150]
 gi|296438992|gb|ADH21145.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis E/11023]
          Length = 490

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 113/495 (22%), Positives = 199/495 (40%), Gaps = 42/495 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   D     F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++          + + PDFP GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILND--------QPFSLLPDFPPGGTMDASD------YQDGLGSIVLRATIDII 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I        I +  D   + + D+  +     + 
Sbjct: 219 NDKT----LLIKEICPSTTTETLIRSIENAAKRGIIKI--DSIQDFSTDLPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +               P    +  IL+      +  L +     
Sbjct: 273 IHAKDLLRPLYTHTECQVILTSR-PTAIYQGKPWETTISEILRLQTETLQNYLKKELLIL 331

Query: 380 MQAIDRRVE--ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             ++ R +    L+ L I +   D + +++              ++ E     +  L   
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSTIHNAVLEALTPFLDTLPAP 391

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE--------VKEIFSKS 489
             +   +    +    L  ++   +  L   +++ + +  ++ +        +K++    
Sbjct: 392 DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLETY 451

Query: 490 TDLGRRRTTFCEVSR 504
             LG R+T   +   
Sbjct: 452 RQLGHRKTKIAKFDD 466


>gi|255311486|ref|ZP_05354056.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 6276]
 gi|255317787|ref|ZP_05359033.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 6276s]
          Length = 490

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 113/495 (22%), Positives = 199/495 (40%), Gaps = 42/495 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   D     F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++          + + PDFP GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILND--------QPFSLLPDFPPGGTMDASD------YQDGLGSIVLRATIDII 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I        I +  D   + + D+  +     + 
Sbjct: 219 NDKT----LLIKEICPSTTTETLIRSIENAAKRGIIKI--DSIQDFSTDLPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +               P    +  IL+      +  L +     
Sbjct: 273 IHAKDLLRPLYTHTECQVILTSR-PTAIYQGKPWETTISEILRLQTETLQNYLKKELLIL 331

Query: 380 MQAIDRRVE--ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             ++ R +    L+ L I +   D + +++              ++ E     +  L   
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAP 391

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE--------VKEIFSKS 489
             +   +    +    L  ++   +  L   +++ + +  ++ +        +K++    
Sbjct: 392 DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLETY 451

Query: 490 TDLGRRRTTFCEVSR 504
             LG R+T   +   
Sbjct: 452 RQLGHRKTKIAKFDD 466


>gi|296437129|gb|ADH19299.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/11222]
          Length = 490

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 117/495 (23%), Positives = 201/495 (40%), Gaps = 42/495 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   D     F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++          + + PDFP GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILND--------QPFSLLPDFPPGGTMDASD------YQDGLGSIVLRATIDII 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I        I +  D   + + D+  +     + 
Sbjct: 219 NDKT----LLIKEICPSTTTETLIRSIENAAKRGIIKI--DSIQDFSTDLPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +               P    +  IL+      +  L +     
Sbjct: 273 IYAKDLLRPLYTHTECQVILTSR-PTAIYQGKPWETTISEILRLQTKTLQNYLKKELLIL 331

Query: 380 MQAIDRRVE--ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR-- 435
             ++ R +    L+ L I +   D + +++              ++ E     +  L   
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAP 391

Query: 436 ----LRSLRKLEEYQI-KSELDNLLAEKEKIDSLLNSGKQQWNQIACE-IREVKEIFSKS 489
                  L  L   +I   + ++   E   ++   +S ++  +Q+    +  +K++    
Sbjct: 392 DKQATAQLAALTIKKILCFDENSYEKELACLEKKHSSVQKDLSQLKKYTVLYIKKLLETY 451

Query: 490 TDLGRRRTTFCEVSR 504
             LG R+T   +   
Sbjct: 452 RQLGHRKTKIAKFDD 466


>gi|207110089|ref|ZP_03244251.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 132

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 81/132 (61%), Positives = 101/132 (76%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 1   LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 120

Query: 186 GMATSIPSHNVQ 197
           GMATSIP H + 
Sbjct: 121 GMATSIPPHRMD 132


>gi|15605393|ref|NP_220179.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|3329110|gb|AAC68255.1| DNA Gyrase Subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|297748791|gb|ADI51337.1| DNA gyrase subunit A [Chlamydia trachomatis D-EC]
 gi|297749671|gb|ADI52349.1| DNA gyrase subunit A [Chlamydia trachomatis D-LC]
          Length = 490

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 113/495 (22%), Positives = 199/495 (40%), Gaps = 42/495 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   D     F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++          + + PDFP GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILND--------QPFSLLPDFPPGGTMDASD------YQDGLGSIVLRATIDII 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I        I +  D   + + D+  +     + 
Sbjct: 219 NDKT----LLIKEICPSTTTETLIRSIENAAKRGIIKI--DSIQDFSTDLPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +               P    +  IL+      +  L +     
Sbjct: 273 IYAKDLLRPLYTHTECQVILTSR-PTAIYQGKPWETTISEILRLQTKTLQNYLKKELLIL 331

Query: 380 MQAIDRRVE--ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             ++ R +    L+ L I +   D + +++              ++ E     +  L   
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSTIHNAVLEALTPFLDTLPAP 391

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE--------VKEIFSKS 489
             +   +    +    L  ++   +  L   +++ + +  ++ +        +K++    
Sbjct: 392 DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLETY 451

Query: 490 TDLGRRRTTFCEVSR 504
             LG R+T   +   
Sbjct: 452 RQLGHRKTKIAKFDD 466


>gi|76789400|ref|YP_328486.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis A/HAR-13]
 gi|237803090|ref|YP_002888284.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|76167930|gb|AAX50938.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|231274324|emb|CAX11119.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|296436200|gb|ADH18374.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/9768]
 gi|296438060|gb|ADH20221.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/11074]
 gi|297140562|gb|ADH97320.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/9301]
          Length = 490

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 113/495 (22%), Positives = 199/495 (40%), Gaps = 42/495 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   D     F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++          + + PDFP GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILND--------QPFSLLPDFPPGGTMDASD------YQDGLGSIVLRATIDII 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I        I +  D   + + D+  +     + 
Sbjct: 219 NDKT----LLIKEICPSTTTETLIRSIENAAKRGIIKI--DSIQDFSTDLPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +               P    +  IL+      +  L +     
Sbjct: 273 IYAKDLLRPLYTHTECQVILTSR-PTAIYQGKPWETTISEILRLQTKTLQNYLKKELLIL 331

Query: 380 MQAIDRRVE--ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             ++ R +    L+ L I +   D + +++              ++ E     +  L   
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAP 391

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE--------VKEIFSKS 489
             +   +    +    L  ++   +  L   +++ + +  ++ +        +K++    
Sbjct: 392 DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLETY 451

Query: 490 TDLGRRRTTFCEVSR 504
             LG R+T   +   
Sbjct: 452 RQLGHRKTKIAKFDD 466


>gi|261871070|gb|ACY02504.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 72/125 (57%), Positives = 95/125 (76%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 198 EICEA 202
           E+   
Sbjct: 121 EVING 125


>gi|237805011|ref|YP_002889165.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273311|emb|CAX10226.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 490

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 113/495 (22%), Positives = 200/495 (40%), Gaps = 42/495 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           +L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   NLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   D     F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++          + + PDFP GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILND--------QPFSLLPDFPPGGTMDASD------YQDGLGSIVLRATIDII 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I        I +  D   + + D+  +     + 
Sbjct: 219 NDKT----LLIKEICPSTTTETLIRSIENAAKRGIIKI--DSIQDFSTDLPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +               P    +  IL+      +  L +     
Sbjct: 273 IYAKDLLRPLYTHTECQVILTSR-PTAIYQGKPWETTISEILRLQTKTLQNYLKKELLIL 331

Query: 380 MQAIDRRVE--ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             ++ R +    L+ L I +   D + +++              ++ E     +  L   
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAP 391

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE--------VKEIFSKS 489
             +   +    +    L  ++   +  L   +++ + +  ++ +        +K++    
Sbjct: 392 DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLETY 451

Query: 490 TDLGRRRTTFCEVSR 504
             LG R+T   +   
Sbjct: 452 RQLGHRKTKIAKFDD 466


>gi|269148358|gb|ACZ28550.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 115

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 92/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGPKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|11761866|gb|AAG40223.1|AF303612_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 74/127 (58%), Positives = 98/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|145642255|ref|ZP_01797821.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|145273060|gb|EDK12940.1| DNA gyrase subunit A [Haemophilus influenzae 22.4-21]
          Length = 566

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 103/498 (20%), Positives = 184/498 (36%), Gaps = 69/498 (13%)

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  ++ L+ M+  F +NM  L     P++  L  I++ ++ HRREV+ RRS F ++  
Sbjct: 1   MVLNHLYSLTQMQVTFGINMVALDH-GQPRLFNLKEIIESFVLHRREVVTRRSIFELRKA 59

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------------------- 415
             R  IL+GL +A  NIDE+IAIIRN    +                             
Sbjct: 60  RERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDIINLLDVSARPDE 119

Query: 416 ------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                 +   ++ L+  QV+AIL LRL  L  +   ++  E + LL +   +  +L+S +
Sbjct: 120 LEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAE 179

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ EVK  F           +         A     +       V       
Sbjct: 180 RLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTD 239

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HG 587
             + +      SA   KE D ++  L A+T D IL  S+ G+ Y L    L        G
Sbjct: 240 YEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRGARG 299

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  ++ L  N+ I        Y+    +++ ++ G    +  +E       G   L +
Sbjct: 300 RPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSNGIIALNL 359

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--------- 693
             E+++  V    G + + +     +++ F+ + +  M R   GVR              
Sbjct: 360 RDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDE 419

Query: 694 -----------------DGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGG 735
                            D  I  V+   + +G    + +    Y +           R  
Sbjct: 420 SAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNT 479

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +  K   R+GK +++
Sbjct: 480 KGVISIKVSERNGKVVAA 497



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V      +L  +  G     + SE    +R  K  + +       K+    
Sbjct: 439 NIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 498

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +V   D + ++ +   L+   + ++  + R  +GVRL    D      +
Sbjct: 499 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSL 547


>gi|331678180|ref|ZP_08378855.1| DNA gyrase subunit A [Escherichia coli H591]
 gi|331074640|gb|EGI45960.1| DNA gyrase subunit A [Escherichia coli H591]
          Length = 542

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 95/454 (20%), Positives = 160/454 (35%), Gaps = 45/454 (9%)

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            V      P++M L  I+  ++ HRREV+ RR+ F ++    R  IL+ L +A  NID I
Sbjct: 1   MVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPI 60

Query: 404 IAIIRNEDKPKP-------------------------------------VMVSRFSLTEN 426
           I +IR+   P                                       V    + LTE 
Sbjct: 61  IELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQ 120

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+  V+E F
Sbjct: 121 QAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF 180

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                      +               +       V         + +      SA   K
Sbjct: 181 GDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK 240

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVT 604
           E D +   L A+T D IL  S+ G+ Y++    L        G  I  L+ L  ++ I  
Sbjct: 241 EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITA 300

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                 ++   K+ + ++ G       +E       GK  +K+   +++  V   +G D 
Sbjct: 301 ILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE 360

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +     K++ F    +  M     GVR     +G     +     +G   + +    Y
Sbjct: 361 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGY 419

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           R   G +  K   R+G  + +
Sbjct: 420 GKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 453



 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 359 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 418

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 419 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 478

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 479 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 515


>gi|138999748|dbj|BAF51242.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 110/144 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP+++   L+E + G
Sbjct: 122 IDALKLVMDNPDVTTRDLMEVLPG 145


>gi|24216892|ref|NP_714373.1| DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45659166|ref|YP_003252.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24198273|gb|AAN51391.1|AE011572_13 DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602412|gb|AAS71889.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 462

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 101/494 (20%), Positives = 205/494 (41%), Gaps = 44/494 (8%)

Query: 6   ISNSNTL-VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + NSN    +E+         + +    Y+      RAIP   DG KPV RRI+ AM   
Sbjct: 1   MKNSNPPKSKESFPKRPFEDQVNDDQRKYSRYVCDSRAIPHEIDGLKPVQRRILWAMW-- 58

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNID 122
             D    + K+ ++ G  +G  HPHGD+S+ D+L ++AQ F      PL+SG+G FG++ 
Sbjct: 59  NSDARNRYTKTVKVAGLAMG-YHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVL 117

Query: 123 GDSA-AAYRYTEARMTQVAELI-----LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
             SA A+ RYTE +++   + +     L  +     D+   Y+E + EP+ F  K P +L
Sbjct: 118 DPSAIASPRYTEVKLSDFVKDLGFFESLPDI-----DYVKNYDETEDEPIHFVGKVPIVL 172

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            N   GIA G    IP H + +I ++ +  + + +    K                 +  
Sbjct: 173 LNNIQGIATGFRCFIPGHRLADIVKSQINYLKSKKPLSLKP--------------WYKDF 218

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
              V+      G   +   +           + +T+ P    + ++I  + +++  ++  
Sbjct: 219 NGEVKMAETETGNITMSTTFAF---KWEGDTLYLTDSPMNWNREKVISLLDDIL-ERKDS 274

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            L+D  D S++  R+ L  K         + ++F   D++    L MNV++     +   
Sbjct: 275 WLKDYVDYSSQTFRVELQYKKGEKPSQKEIMALFNKEDVQ---TLAMNVITYDGKLKNFK 331

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL-KGLLIAYLNIDEIIAIIRNEDKPKP 415
            + I+K +   R+  L RR        + ++E   + +       +E +  I+++   + 
Sbjct: 332 PEEIIKRFCDFRKTHLIRRFKRLSGLEEEKIERNSELIRFIKEKWNEKVIGIKSKKDFEE 391

Query: 416 VMVSRFSLTENQV-DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
               +   ++ +  + +  + +  +   E  + +  +        +   L+   K+    
Sbjct: 392 ----KLKTSKFKYFEWLSTIPVYRMTIEEVKKCEEAIVEAKTTLARYQGLVKEDKKLTEF 447

Query: 475 IACEIREVKEIFSK 488
           +  E+ E++  + K
Sbjct: 448 MIIELEELQNKWDK 461


>gi|261871066|gb|ACY02502.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 72/125 (57%), Positives = 95/125 (76%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 198 EICEA 202
           E+   
Sbjct: 121 EVING 125


>gi|138999588|dbj|BAF51190.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999590|dbj|BAF51191.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999592|dbj|BAF51192.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999598|dbj|BAF51193.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999602|dbj|BAF51194.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999604|dbj|BAF51195.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999606|dbj|BAF51196.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999609|dbj|BAF51197.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999611|dbj|BAF51198.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999614|dbj|BAF51199.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999616|dbj|BAF51200.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999623|dbj|BAF51202.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999625|dbj|BAF51203.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999627|dbj|BAF51204.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999633|dbj|BAF51205.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999635|dbj|BAF51206.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999637|dbj|BAF51207.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999642|dbj|BAF51208.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999644|dbj|BAF51209.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999649|dbj|BAF51210.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999651|dbj|BAF51211.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999653|dbj|BAF51212.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999658|dbj|BAF51213.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999660|dbj|BAF51214.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999662|dbj|BAF51215.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999664|dbj|BAF51216.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999666|dbj|BAF51217.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999668|dbj|BAF51218.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999695|dbj|BAF51227.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999701|dbj|BAF51228.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999705|dbj|BAF51229.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999707|dbj|BAF51230.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999711|dbj|BAF51231.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999731|dbj|BAF51237.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999733|dbj|BAF51238.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999739|dbj|BAF51239.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999760|dbj|BAF51245.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000003|dbj|BAF51146.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000005|dbj|BAF51147.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000008|dbj|BAF51148.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000010|dbj|BAF51149.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000012|dbj|BAF51150.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000017|dbj|BAF51151.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000022|dbj|BAF51152.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000024|dbj|BAF51153.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000030|dbj|BAF51154.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000032|dbj|BAF51155.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000034|dbj|BAF51156.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000038|dbj|BAF51157.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000040|dbj|BAF51158.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000045|dbj|BAF51159.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000050|dbj|BAF51160.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000052|dbj|BAF51161.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000058|dbj|BAF51162.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000060|dbj|BAF51163.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000064|dbj|BAF51164.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000066|dbj|BAF51165.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000068|dbj|BAF51166.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000071|dbj|BAF51167.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000073|dbj|BAF51168.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000079|dbj|BAF51169.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000081|dbj|BAF51170.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000087|dbj|BAF51171.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000089|dbj|BAF51172.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000092|dbj|BAF51173.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000097|dbj|BAF51174.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000099|dbj|BAF51175.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000104|dbj|BAF51176.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000106|dbj|BAF51177.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000108|dbj|BAF51178.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000114|dbj|BAF51179.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000116|dbj|BAF51180.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000119|dbj|BAF51181.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000121|dbj|BAF51182.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000123|dbj|BAF51183.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000128|dbj|BAF51184.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000130|dbj|BAF51185.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000133|dbj|BAF51186.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000135|dbj|BAF51187.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000141|dbj|BAF51188.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000143|dbj|BAF51189.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538783|dbj|BAG67626.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538785|dbj|BAG67627.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538787|dbj|BAG67628.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538789|dbj|BAG67629.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538791|dbj|BAG67630.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538793|dbj|BAG67631.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538795|dbj|BAG67632.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538797|dbj|BAG67633.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538799|dbj|BAG67634.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538801|dbj|BAG67635.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538803|dbj|BAG67636.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538805|dbj|BAG67637.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538807|dbj|BAG67638.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538809|dbj|BAG67639.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538811|dbj|BAG67640.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538813|dbj|BAG67641.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538815|dbj|BAG67642.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538817|dbj|BAG67643.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538819|dbj|BAG67644.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538821|dbj|BAG67645.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538823|dbj|BAG67646.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538825|dbj|BAG67647.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538827|dbj|BAG67648.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538829|dbj|BAG67649.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538831|dbj|BAG67650.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538833|dbj|BAG67651.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538835|dbj|BAG67652.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538837|dbj|BAG67653.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538839|dbj|BAG67654.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538841|dbj|BAG67655.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538843|dbj|BAG67656.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538845|dbj|BAG67657.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538847|dbj|BAG67658.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538849|dbj|BAG67659.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538851|dbj|BAG67660.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538853|dbj|BAG67661.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538855|dbj|BAG67662.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538857|dbj|BAG67663.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538859|dbj|BAG67664.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538861|dbj|BAG67665.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538863|dbj|BAG67666.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538865|dbj|BAG67667.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538867|dbj|BAG67668.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538869|dbj|BAG67669.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538871|dbj|BAG67670.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538873|dbj|BAG67671.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538875|dbj|BAG67672.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538877|dbj|BAG67673.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538879|dbj|BAG67674.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538881|dbj|BAG67675.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538883|dbj|BAG67676.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538885|dbj|BAG67677.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538887|dbj|BAG67678.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538889|dbj|BAG67679.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538891|dbj|BAG67680.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538893|dbj|BAG67681.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538895|dbj|BAG67682.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538897|dbj|BAG67683.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538899|dbj|BAG67684.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538901|dbj|BAG67685.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538903|dbj|BAG67686.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538905|dbj|BAG67687.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538907|dbj|BAG67688.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538909|dbj|BAG67689.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538911|dbj|BAG67690.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538913|dbj|BAG67691.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538915|dbj|BAG67692.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538917|dbj|BAG67693.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538919|dbj|BAG67694.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538921|dbj|BAG67695.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538923|dbj|BAG67696.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538925|dbj|BAG67697.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538927|dbj|BAG67698.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538929|dbj|BAG67699.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538931|dbj|BAG67700.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538933|dbj|BAG67701.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538935|dbj|BAG67702.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538937|dbj|BAG67703.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538939|dbj|BAG67704.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538941|dbj|BAG67705.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538943|dbj|BAG67706.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538945|dbj|BAG67707.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538947|dbj|BAG67708.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538949|dbj|BAG67709.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539001|dbj|BAG67735.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539003|dbj|BAG67736.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539005|dbj|BAG67737.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 110/144 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP+++   L+E + G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|2588920|dbj|BAA23211.1| GyrA subunit [Klebsiella pneumoniae]
          Length = 109

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 65/109 (59%), Positives = 90/109 (82%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 109


>gi|297242375|gb|ADI24860.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 69/122 (56%), Positives = 91/122 (74%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPTLLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|138999618|dbj|BAF51201.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 110/144 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AIEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP+++   L+E + G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|297242311|gb|ADI24828.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242317|gb|ADI24831.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242325|gb|ADI24835.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242329|gb|ADI24837.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242351|gb|ADI24848.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242353|gb|ADI24849.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242357|gb|ADI24851.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242359|gb|ADI24852.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242361|gb|ADI24853.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242363|gb|ADI24854.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242365|gb|ADI24855.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242367|gb|ADI24856.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242373|gb|ADI24859.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242377|gb|ADI24861.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242379|gb|ADI24862.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242381|gb|ADI24863.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 69/122 (56%), Positives = 91/122 (74%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|138999757|dbj|BAF51244.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 73/144 (50%), Positives = 110/144 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP++ PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLILPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP+++   L+E + G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|138999671|dbj|BAF51219.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999673|dbj|BAF51220.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999675|dbj|BAF51221.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999677|dbj|BAF51222.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999679|dbj|BAF51223.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999685|dbj|BAF51224.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999687|dbj|BAF51225.1| DNA gyrase subunit A [Streptococcus mutans NN2025]
 gi|138999689|dbj|BAF51226.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999713|dbj|BAF51232.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538951|dbj|BAG67710.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538953|dbj|BAG67711.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538955|dbj|BAG67712.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538957|dbj|BAG67713.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538959|dbj|BAG67714.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538961|dbj|BAG67715.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538963|dbj|BAG67716.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538965|dbj|BAG67717.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538967|dbj|BAG67718.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538969|dbj|BAG67719.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538971|dbj|BAG67720.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538973|dbj|BAG67721.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538975|dbj|BAG67722.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538977|dbj|BAG67723.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538979|dbj|BAG67724.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538981|dbj|BAG67725.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538983|dbj|BAG67726.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538985|dbj|BAG67727.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538987|dbj|BAG67728.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538989|dbj|BAG67729.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538991|dbj|BAG67730.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538993|dbj|BAG67731.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538995|dbj|BAG67732.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538997|dbj|BAG67733.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538999|dbj|BAG67734.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 109/144 (75%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A    +DNP+++   L+E + G
Sbjct: 122 IDAVKLAMDNPDVTTRDLMEVLPG 145


>gi|261871062|gb|ACY02500.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 72/125 (57%), Positives = 95/125 (76%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 198 EICEA 202
           E+   
Sbjct: 121 EVING 125


>gi|138999717|dbj|BAF51233.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999722|dbj|BAF51234.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999724|dbj|BAF51235.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999729|dbj|BAF51236.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539007|dbj|BAG67738.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539009|dbj|BAG67739.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539011|dbj|BAG67740.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539013|dbj|BAG67741.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539015|dbj|BAG67742.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539017|dbj|BAG67743.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539019|dbj|BAG67744.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539021|dbj|BAG67745.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539023|dbj|BAG67746.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539025|dbj|BAG67747.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539027|dbj|BAG67748.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539029|dbj|BAG67749.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539031|dbj|BAG67750.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539033|dbj|BAG67751.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539035|dbj|BAG67752.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539037|dbj|BAG67753.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539039|dbj|BAG67754.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539041|dbj|BAG67755.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539043|dbj|BAG67756.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539045|dbj|BAG67757.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539047|dbj|BAG67758.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539049|dbj|BAG67759.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539051|dbj|BAG67760.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539053|dbj|BAG67761.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 109/144 (75%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP ++   L+E + G
Sbjct: 122 IDAVKLVMDNPYVTTRDLMEVLPG 145


>gi|313192111|emb|CBX19915.1| gyrase A [Clostridium perfringens]
          Length = 277

 Score =  236 bits (603), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 114/277 (41%), Positives = 179/277 (64%), Gaps = 3/277 (1%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMA
Sbjct: 3   MRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMA 62

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G
Sbjct: 63  TNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKG 121

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +
Sbjct: 122 RIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDRE 180

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +
Sbjct: 181 GMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQ 239

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           ++V+ RR+ F +     R  IL+GL+IA  NIDE+I 
Sbjct: 240 KDVITRRTQFELNKAKERAHILEGLIIALDNIDEVIN 276


>gi|116327081|ref|YP_796801.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116332262|ref|YP_801980.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116119825|gb|ABJ77868.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125951|gb|ABJ77222.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 462

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 101/492 (20%), Positives = 197/492 (40%), Gaps = 40/492 (8%)

Query: 6   ISNSNTL-VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + NSN   ++++         + +    Y+      RAIP   DG KPV RRI+ AM   
Sbjct: 1   MKNSNPPKLKDSFPKRPFEDQVNDDQRKYSRYVCDSRAIPHEIDGLKPVQRRILWAMW-- 58

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNID 122
             D    + K+ ++ G  +G  HPHGD+S+ D+L ++AQ F      PL+SG+G FG++ 
Sbjct: 59  NSDARNRYTKTVKVAGLAMG-YHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVL 117

Query: 123 GDSA-AAYRYTEARMTQVAELI-----LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
             SA A+ RYTE +++   + +     L  +     D+   Y+E + EP+ F  K P +L
Sbjct: 118 DPSAIASPRYTEVKLSDFVKDLGFFESLPDI-----DYVKNYDETEDEPIHFVGKVPIVL 172

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            N   GIA G    IP H + +I ++ +  +   +    K                 +  
Sbjct: 173 LNNIQGIATGFRCFIPGHRLADIVKSQINYLKTKKPLSLKP--------------WYKDF 218

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
              V+      G   +   +           + +T+ P    + ++I  + +++  ++  
Sbjct: 219 NGEVKMAETETGNITMSTTFAF---KWEGDILYLTDSPMNWNREKVISLLDDIL-ERKDS 274

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            L++  D S++  RI L  K         + ++F   D++    L MNV++     +   
Sbjct: 275 WLKEYVDYSSQTFRIELQYKKGEKPSQKEIMALFNKEDIQ---TLAMNVITYDGKLKNFK 331

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
            + I+K +   R+  L RR        + ++E    L+           I     K    
Sbjct: 332 PEEIIKRFCDFRKTHLIRRFKRLSGLEEEKIERNSELIRFIKEKWNEKVIGIKSKKDFED 391

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            +          + +  + +  +   E  + +  +        +   L+   K+  + + 
Sbjct: 392 KLKASKFKYF--EWLSTIPVYRMTIEEVKKCEEAIIEAKTTLARYQGLVKEDKKLTDYMI 449

Query: 477 CEIREVKEIFSK 488
            E+ E++  + K
Sbjct: 450 TELNELQNKWDK 461


>gi|89898786|ref|YP_515896.1| DNA topoisomerase IV subunit A [Chlamydophila felis Fe/C-56]
 gi|89332158|dbj|BAE81751.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
          Length = 479

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 121/506 (23%), Positives = 212/506 (41%), Gaps = 43/506 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
             +    +  ++ YA   I ERAIP + DG KPV RR++  +  M         K A I 
Sbjct: 2   QDVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRM---DDGKMHKVANIA 58

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ 
Sbjct: 59  GRTMA-LHPHGDAPIVEALVVLA----NKGYLIDTQGNFGNPLTGDPHAAARYIEARLSP 113

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+ IL   + D + F D+Y+  + EP + P+K P LL +G  GIAVGM T I  HN+ E
Sbjct: 114 LAKDIL--FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLYE 171

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + EA +A        I     + + PDF +GG++  S       Y+ G G   +RA   +
Sbjct: 172 LIEAQIA--------ILNNRTFTLLPDFYSGGVMDASE------YQDGLGSITIRASIQI 217

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +       +++ EI        LI  I        I +  D   + + D   +     +
Sbjct: 218 VDSKT----LIIKEICPSTTTETLIRSIENAAKRGVIKI--DSIQDFSTDQPHIEIKLPK 271

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA-----HRREVLF 373
            +    ++E +F  ++ +               P    +  ILK          ++E+  
Sbjct: 272 GIYAKDILEPLFQYTECQVVLTSK-PTAIYNNKPVETSISEILKLHTEALEGYLQKELQI 330

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
                  +   + +E +      Y  + E+++ + N+   + +  +  +     + ++  
Sbjct: 331 LHDELAQEHYYKSLEYIFIKHRLYDIVRELLSKLGNKVSQEDLHEAVLASLAPFISSLPE 390

Query: 434 LRLRSLRKLE-----EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE-IREVKEIFS 487
              +           +  +     +   + E I     + K+  + +    I+ +K + +
Sbjct: 391 APCKQATSQLASLAIKKILCFNETSYTKDLEGIKKKQTAVKKDLSNMKKFTIKYLKGLLA 450

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQA 513
           K  +LG+R+T     S   K+ L+Q 
Sbjct: 451 KYGELGKRKTQILSFSNQKKSVLKQQ 476


>gi|261871072|gb|ACY02505.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 71/125 (56%), Positives = 96/125 (76%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 120

Query: 198 EICEA 202
           E+   
Sbjct: 121 EVING 125


>gi|309753204|gb|ADO85625.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 76/106 (71%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           HGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 61  HGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|18448212|gb|AAL69651.1|AF372652_1 topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 137

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 64/137 (46%), Positives = 93/137 (67%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ V    L   +   +  YA   I+ERA+PD+RDG KPV RR+++ M  +GL +  +
Sbjct: 1   MDKKKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKS 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA  VGEVIGK HPHGD S+Y++LVR+ Q +    PLI  QGN G+IDGD+AAA RY
Sbjct: 61  YRKSAATVGEVIGKFHPHGDSSIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVD 148
           TEAR++    L+L+ ++
Sbjct: 121 TEARLSHYGNLMLENIN 137


>gi|171850795|emb|CAP11080.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 110

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 57/110 (51%), Positives = 85/110 (77%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
             L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF+  +
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNF 110


>gi|138999741|dbj|BAF51240.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999746|dbj|BAF51241.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/144 (50%), Positives = 110/144 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++V++AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVQMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP+++   L+E + G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|18175500|gb|AAL60063.1| topoisomerase IV subunit A [Yersinia enterocolitica]
          Length = 128

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 65/128 (50%), Positives = 93/128 (72%), Gaps = 1/128 (0%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRII+AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ G
Sbjct: 1   RRIIYAMSELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG 60

Query: 115 QGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           QGN+G  D   S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ P
Sbjct: 61  QGNWGAPDDPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLP 120

Query: 174 NLLANGTS 181
           N+L NGT+
Sbjct: 121 NILLNGTT 128


>gi|297242355|gb|ADI24850.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242369|gb|ADI24857.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242371|gb|ADI24858.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/122 (56%), Positives = 90/122 (73%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D+  V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|261871064|gb|ACY02501.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/125 (56%), Positives = 94/125 (75%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 198 EICEA 202
           E+   
Sbjct: 121 EVING 125


>gi|284192203|gb|ADB82821.1| DNA gyrase subunit A [Coxiella burnetii]
          Length = 121

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/121 (57%), Positives = 90/121 (74%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +    KKSARIVG+VIGK HPHGD +VY ++VR+AQPF  RY LI GQGNFG++DGD+ A
Sbjct: 1   WNKPNKKSARIVGDVIGKYHPHGDVAVYGTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE R+++ A  ++  +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGM
Sbjct: 61  AMRYTEIRLSRFAHALMADLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGM 120

Query: 188 A 188
           A
Sbjct: 121 A 121


>gi|309753212|gb|ADO85629.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 75/106 (70%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           HGD S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 61  HGDASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|297242307|gb|ADI24826.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242333|gb|ADI24839.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 122

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/120 (57%), Positives = 91/120 (75%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA 
Sbjct: 2   KKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 61

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 62  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 121


>gi|183220091|ref|YP_001838087.1| DNA gyrase/topoisomerase subunit A [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167778513|gb|ABZ96811.1| DNA gyrase/topoisomerase, type IV, subunit A [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 461

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 100/491 (20%), Positives = 204/491 (41%), Gaps = 41/491 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      EE          + +    Y+      RAIP   DG KPV RRI+ AM    
Sbjct: 1   MSFGTMKNEEQYPKRPFEDQVNDDQRKYSRYVCDSRAIPQEIDGLKPVQRRILWAMW--N 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP--FVQRYPLISGQGNFGNIDG 123
            D      K+ ++ G  +G  HPHGD+S+ D+L ++AQ   F   YPL+ G+G FG++  
Sbjct: 59  SDARNRHTKTVKVAGLAMG-YHPHGDRSIQDALSQMAQDFAFANNYPLVHGEGTFGDVLD 117

Query: 124 DSA-AAYRYTEARMTQVAELI-----LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
            +A A+ RYTE +++  A+ +     L  +     D+   Y+E + EP+ F  K P +L 
Sbjct: 118 PNAIASPRYTEVKLSDFAKDLGFFESLPDI-----DYVKNYDETEDEPIHFVGKVPVVLL 172

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           N   GIA G    IP+H + ++ E+   +        +K+  +  G             E
Sbjct: 173 NNIQGIATGFRCFIPAHKLSDVIESQ--VTYLKTGKPKKITPWYKG----------YGGE 220

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             +     G         +  E+       + + + P    + +++  + +LI  ++   
Sbjct: 221 VKLSKNDNGNTVMSTTFGFKKEDGK-----LYLVDSPMNWNREKVVNYLDDLI-ERKDNW 274

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           L+D  D S++  +I L  K      +  ++ +F   + E    L +NV++     +    
Sbjct: 275 LKDYVDHSSQTFKIELIAKKGEEPSEKEIKELFTKENNEV---LTINVITHEGKLRNFGP 331

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL-KGLLIAYLNIDEIIAIIRNEDKPKPV 416
           + I+K +   R+  L RR          +++   + +       +E +  I+++ + +  
Sbjct: 332 EEIIKRFCDFRKTHLIRRFKRLAGLEKEKIDRNSELIRFIKERWNEKVTGIKSKKEFEDK 391

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           + +   +     + + ++ +  +   E  + +  +     +  +  +L    K+    + 
Sbjct: 392 LKAAKFV---YFEWLSSIPVYRMTLEEVRKCEDAIVEAKTKYTEYTTLQKDDKKLTGFMT 448

Query: 477 CEIREVKEIFS 487
            E+ E+K+ + 
Sbjct: 449 DELDELKKKWD 459


>gi|138999750|dbj|BAF51243.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 109/144 (75%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN  E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNSGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP+++   L+E + G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|218672863|ref|ZP_03522532.1| DNA gyrase subunit A [Rhizobium etli GR56]
          Length = 125

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 57/104 (54%), Positives = 79/104 (75%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  A
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPA 105


>gi|309753208|gb|ADO85627.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 76/106 (71%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           HGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 61  HGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|301014720|gb|ADK47159.1| topoisomerase IV [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 114

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 64/114 (56%), Positives = 87/114 (76%), Gaps = 1/114 (0%)

Query: 32  AYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGD 91
            Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD
Sbjct: 1   NYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGD 60

Query: 92  QSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
            + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ AEL+L
Sbjct: 61  SACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLL 114


>gi|219921136|emb|CAQ76693.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 119

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 72/119 (60%), Positives = 95/119 (79%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 1   ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 60

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           M+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 61  MSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 119


>gi|29839794|ref|NP_828900.1| DNA topoisomerase IV subunit A [Chlamydophila caviae GPIC]
 gi|29834141|gb|AAP04778.1| topoisomerase, subunit A, putative [Chlamydophila caviae GPIC]
          Length = 479

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 115/494 (23%), Positives = 204/494 (41%), Gaps = 43/494 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++    +  ++ YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   NVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGYLIDMQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ IL   + D + F D+Y+  + EP + P+K P LL +G  GIAVGM T I  HN+ E+
Sbjct: 115 AKEIL--FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +A+++           + + PDF +GG++  S       Y+ G G   +RA   + 
Sbjct: 173 IAAQIAVLN--------NRAFTLLPDFYSGGVMDASE------YQDGLGSITMRASIQIA 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       +++ EI        LI  I        I +  D   + + D   +     + 
Sbjct: 219 DQKT----LIIKEICPSTTTETLIRSIENAAKRGVIKI--DSIQDFSTDQPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFR 374
           +    ++E++F  ++ +               P    +  IL+          ++E+   
Sbjct: 273 VYAKDILETLFQHTECQVVLTSK-PTAIYNNKPVETTISEILRLHTEVLEGYLQKELQIL 331

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
                 +   + +E +      Y  + E ++ + N+   + +  +  S     + ++   
Sbjct: 332 HDELSQEHYYKSLEYIFIKHRLYDTVRENLSKLGNKVSQEDLHEAVLSSLSPFLASLPET 391

Query: 435 RLRSLRKL------EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             +           ++    +E        +         K   N     I+ +K + +K
Sbjct: 392 PNKEATGQLASLAIKKILCFNESHYTKDLAKIEKKQAAVEKDLNNMKKFTIKYLKGLLAK 451

Query: 489 STDLGRRRTTFCEV 502
             +LG+R+T     
Sbjct: 452 YGELGKRKTQVLSF 465


>gi|85376451|gb|ABC70468.1| DNA gyrase [Listonella anguillarum]
          Length = 100

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 66/100 (66%), Positives = 83/100 (83%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 100


>gi|297242309|gb|ADI24827.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242319|gb|ADI24832.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242327|gb|ADI24836.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242331|gb|ADI24838.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242337|gb|ADI24841.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242339|gb|ADI24842.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242341|gb|ADI24843.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242343|gb|ADI24844.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 68/122 (55%), Positives = 90/122 (73%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+ IGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDAIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|261871068|gb|ACY02503.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 71/125 (56%), Positives = 94/125 (75%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDFAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 198 EICEA 202
           E+   
Sbjct: 121 EVING 125


>gi|138999762|dbj|BAF51246.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 73/144 (50%), Positives = 109/144 (75%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D  +  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNCDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP+++   L+E + G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|309753206|gb|ADO85626.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 76/106 (71%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           HGD S+Y++LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 61  HGDASIYNTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|4240541|gb|AAD13612.1| DNA gyrase A [Acinetobacter baumannii]
 gi|28629426|gb|AAO32076.1| DNA gyrase [Acinetobacter genomosp. 3]
 gi|28629430|gb|AAO32078.1| DNA gyrase [Acinetobacter genomosp. 13]
          Length = 115

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 69/115 (60%), Positives = 90/115 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|321268258|gb|ADW78937.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268260|gb|ADW78938.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 115

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 63/115 (54%), Positives = 90/115 (78%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 115


>gi|156628728|gb|ABU89281.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628730|gb|ABU89282.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628734|gb|ABU89284.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628736|gb|ABU89285.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 113

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 64/113 (56%), Positives = 87/113 (76%), Gaps = 1/113 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD 
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
           + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ AEL+L
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLL 113


>gi|167945163|ref|ZP_02532237.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 210

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 88/209 (42%), Positives = 144/209 (68%), Gaps = 6/209 (2%)

Query: 101 LAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           +AQPF  RYPL+ GQGN+G+ D   S AA RYTE+R+T  ++++L  + +  V+++  ++
Sbjct: 2   MAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRYTESRLTPYSQVLLSELGQGTVEWQPNFD 61

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
               EP + P++ PN+L NG++GIAVGMAT IP HN++E+  A + L+++P+ S++ LL+
Sbjct: 62  GTLQEPSLLPARLPNVLLNGSTGIAVGMATDIPPHNLREVAAACVHLLESPKASLDDLLD 121

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
           +I GPD+PT   I+   E I + Y  G+G  R+RAR+  E+       I+VT +P+QV  
Sbjct: 122 HIKGPDYPTEAEIITPPEEIRKIYVSGKGSIRMRARYEREQGE-----IIVTTLPHQVSG 176

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R++E+IA  + AK++P++ED+RDES  +
Sbjct: 177 ARVLEQIAAQMQAKKLPMVEDLRDESDHE 205


>gi|330953529|gb|EGH53789.1| DNA gyrase subunit A [Pseudomonas syringae Cit 7]
          Length = 645

 Score =  233 bits (594), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 104/553 (18%), Positives = 202/553 (36%), Gaps = 101/553 (18%)

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            K++  + ++RDES +D   V+    R   P++++ +++  + +++ F +N+  L     
Sbjct: 1   EKKLEGITELRDESDKDGMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALID-GR 59

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+++ L  +L+ ++ HRREV+ RR+ F ++    R  IL+G  +A  NID +IA+I+   
Sbjct: 60  PRILNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASP 119

Query: 412 KPKPV-------------------------------------MVSRFSLTENQVDAILNL 434
            P                                           ++ L+  Q  AIL L
Sbjct: 120 TPAEAKEALIKTPWESSAVVEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILEL 179

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL  L  LE  ++  E   +L +  ++  +LNS  +    I  E+  ++  +  +     
Sbjct: 180 RLHRLTGLEHEKLLGEYQEILNQIGELIRILNSATRLMEVIREELELIRSEYGDA----- 234

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFK 546
           RRT   +   A        +I +E   V IS+ G+         ++ +      SA   K
Sbjct: 235 RRTEILD---ARLDLTLGDLITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIK 291

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           + D +   L A++   +L+ S+ GK Y L    +        G  +  L+ L+  + I T
Sbjct: 292 DEDYIAHLLVANSHTTLLMFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITT 351

Query: 605 AFVYDSTC------------------------------------------KLLVVSSKGN 622
               D                                              + + ++ G 
Sbjct: 352 MLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGT 411

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
                          G   L++   + +       G+  + +  +  K+  F    +  M
Sbjct: 412 VKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAM 471

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R  +GVR     +G     +     EG   + ++ R Y +          KRGG G + 
Sbjct: 472 GRTARGVRGMRLPEGQKLISMLI-PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIA 530

Query: 741 PKGFPRSGKFLSS 753
                R+G+ + +
Sbjct: 531 MVSNERNGRLVGA 543



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++L  S +
Sbjct: 449 QEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMR-LPEGQKLISMLIPEEGSQILTASER 507

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L+   + 
Sbjct: 508 GYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVG 567

Query: 677 QIPEMSRG-KGVRLQSYKDGG 696
           ++  + R  +GV L       
Sbjct: 568 EVSSLGRNPQGVTLIKLASDE 588


>gi|313192093|emb|CBX19906.1| gyrase A [Clostridium perfringens]
          Length = 231

 Score =  233 bits (594), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 102/232 (43%), Positives = 156/232 (67%), Gaps = 2/232 (0%)

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL N
Sbjct: 1   GSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVN 60

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  
Sbjct: 61  GSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSG 119

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  +
Sbjct: 120 IRAAYETGKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGI 178

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
            D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L   +
Sbjct: 179 SDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ 230


>gi|189910211|ref|YP_001961766.1| DNA topoisomerase subunit A [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774887|gb|ABZ93188.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 456

 Score =  233 bits (594), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 99/484 (20%), Positives = 202/484 (41%), Gaps = 41/484 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            EE          + +    Y+      RAIP   DG KPV RRI+ AM     D     
Sbjct: 3   NEEQYPKRPFEDQVNDDQRKYSRYVCDSRAIPQEIDGLKPVQRRILWAMW--NSDARNRH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP--FVQRYPLISGQGNFGNIDGDSA-AAY 129
            K+ ++ G  +G  HPHGD+S+ D+L ++AQ   F   YPL+ G+G FG++   +A A+ 
Sbjct: 61  TKTVKVAGLAMG-YHPHGDRSIQDALSQMAQDFAFANNYPLVHGEGTFGDVLDPNAIASP 119

Query: 130 RYTEARMTQVAELI-----LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           RYTE +++  A+ +     L  +     D+   Y+E + EP+ F  K P +L N   GIA
Sbjct: 120 RYTEVKLSDFAKDLGFFESLPDI-----DYVKNYDETEDEPIHFVGKVPVVLLNNIQGIA 174

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
            G    IP+H + ++ E+   +        +K+  +  G             E  +    
Sbjct: 175 TGFRCFIPAHKLSDVIESQ--VTYLKTGKPKKITPWYKG----------YGGEVKLSKND 222

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G         +  E+       + + + P    + +++  + +LI  ++   L+D  D 
Sbjct: 223 NGNTVMSTTFGFKKEDGK-----LYLVDSPMNWNREKVVNYLDDLI-ERKDNWLKDYVDH 276

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S++  +I L  K      +  ++ +F   + E    L +NV++     +    + I+K +
Sbjct: 277 SSQTFKIELIAKKGEEPSEKEIKELFTKENNEV---LTINVITHEGKLRNFGPEEIIKRF 333

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEIL-KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
              R+  L RR          +++   + +       +E +  I+++ + +  + +   +
Sbjct: 334 CDFRKTHLIRRFKRLAGLEKEKIDRNSELIRFIKERWNEKVTGIKSKKEFEDKLKAAKFV 393

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
                + + ++ +  +   E  + +  +     +  +  +L    K+    +  E+ E+K
Sbjct: 394 ---YFEWLSSIPVYRMTLEEVRKCEDAIVEAKTKYTEYTTLQKDDKKLTGFMTDELDELK 450

Query: 484 EIFS 487
           + + 
Sbjct: 451 KKWD 454


>gi|134141855|gb|ABO61322.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141857|gb|ABO61323.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141859|gb|ABO61324.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141861|gb|ABO61325.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141863|gb|ABO61326.1| topoisomerase IV subunit [Listonella anguillarum]
          Length = 128

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 62/128 (48%), Positives = 92/128 (71%), Gaps = 1/128 (0%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRII+AMSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ G
Sbjct: 1   RRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG 60

Query: 115 QGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           QGN+G  D   S AA RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P
Sbjct: 61  QGNWGAPDDPKSFAAMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARLP 120

Query: 174 NLLANGTS 181
           ++L NG +
Sbjct: 121 HILLNGVT 128


>gi|28629428|gb|AAO32077.1| DNA gyrase [Acinetobacter calcoaceticus]
          Length = 115

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 69/115 (60%), Positives = 90/115 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPQVVPTRVPNLLINGAAGIAVGMA 115


>gi|24475515|dbj|BAC22722.1| DNA gyrase subunit A [Wolbachia endosymbiont of Callosobruchus
           chinensis]
          Length = 124

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/122 (57%), Positives = 92/122 (75%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G   G  +K +ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PL+ GQGNFG+IDGD
Sbjct: 3   GYHAGKPYKNAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGD 62

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             A+ RYTEAR+ +V+  +L  +DED +DFR  Y+  ++EPVV P++FPNLL NG SG+A
Sbjct: 63  PPASMRYTEARLHKVSHFLLNDIDEDTLDFRPNYDGNETEPVVLPAEFPNLLVNGASGVA 122

Query: 185 VG 186
           VG
Sbjct: 123 VG 124


>gi|321268264|gb|ADW78940.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 261

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/229 (37%), Positives = 127/229 (55%), Gaps = 21/229 (9%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    E+ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKEL--- 104

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               + K A +VG  + + HPHGD S+ D++V++ Q    R  LI  QGN+GNI  GDSA
Sbjct: 105 DDGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++ A  +L        D+  +Y+   +EP   P KFP LLA+G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVLY--SPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           ++T +  HN  E+ +A++ ++            + I PDF T GI   S
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGK--------PFTIYPDFQTAGIADVS 258


>gi|321268282|gb|ADW78949.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 263

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/229 (37%), Positives = 127/229 (55%), Gaps = 21/229 (9%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    E+ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKEL--- 104

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               + K A +VG  + + HPHGD S+ D++V++ Q    R  LI  QGN+GNI  GDSA
Sbjct: 105 DDGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++ A  +L        D+  +Y+   +EP   P KFP LLA+G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVLY--SPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           ++T +  HN  E+ +A++ ++            + I PDF T GI   S
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGK--------PFTIYPDFQTAGIADVS 258


>gi|321268280|gb|ADW78948.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 263

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/229 (37%), Positives = 127/229 (55%), Gaps = 21/229 (9%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    E+ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKEL--- 104

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               + K A +VG  + + HPHGD S+ D++V++ Q    R  LI  QGN+GNI  GDSA
Sbjct: 105 DDGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++ A  +L        D+  +Y+   +EP   P KFP LLA+G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVLY--SPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           ++T +  HN  E+ +A++ ++            + I PDF T GI   S
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGK--------PFTIYPDFQTAGIADVS 258


>gi|321268266|gb|ADW78941.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268268|gb|ADW78942.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268270|gb|ADW78943.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268272|gb|ADW78944.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268274|gb|ADW78945.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268276|gb|ADW78946.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268278|gb|ADW78947.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268284|gb|ADW78950.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 262

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/229 (37%), Positives = 127/229 (55%), Gaps = 21/229 (9%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    E+ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKEL--- 104

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               + K A +VG  + + HPHGD S+ D++V++ Q    R  LI  QGN+GNI  GDSA
Sbjct: 105 DDGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++ A  +L        D+  +Y+   +EP   P KFP LLA+G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVLY--SPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           ++T +  HN  E+ +A++ ++            + I PDF T GI   S
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGK--------PFTIYPDFQTAGIADVS 258


>gi|330444050|ref|YP_004377036.1| DNA gyrase/topoisomerase IV subunit A [Chlamydophila pecorum E58]
 gi|328807160|gb|AEB41333.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila pecorum E58]
          Length = 474

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 116/498 (23%), Positives = 206/498 (41%), Gaps = 48/498 (9%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +    + +++ YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DVSELFKTQFMHYASYVILERAIPHVLDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +   HPHGD ++ ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-FHPHGDAAIIEALVVLA----NKGYLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+  L   + D +  +D+Y+  D EP   PSK P LL +G  GIAVGM T I  HN  E+
Sbjct: 115 AKETL--FNTDLMCMQDSYDGRDQEPKTLPSKLPLLLLHGVDGIAVGMMTKIFPHNFSEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +AL+        K   + + PDFP+G ++  ++      Y+ G G   +RA+  + 
Sbjct: 173 IQAQIALL--------KNRPFTLLPDFPSGALMDATQ------YQDGLGSVLLRAKIQIL 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       +++ EI        LI  I        I +  D   + + D+  +     R 
Sbjct: 219 DDKT----LLIQEICPSTTTETLIHSIENAAKRGVIKI--DSIQDFSTDLPHIEIKLPRG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV-LFRRSSF 378
           +  + L+ ++F  ++ +     +         P    +  ILK      +E         
Sbjct: 273 VHAEALLPALFEHTECQVEL-FSRPTAIHHHSPIECSVSTILKFHTEALQEYLQKELQLL 331

Query: 379 RMQAIDRRVEIL-KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE-----------N 426
             Q          + L I +   D +   +    +     + +  L+             
Sbjct: 332 LEQLEREHYHKSLEYLFIKHRLYDPVRERLSKATRVSQEHIHQTILSVLAPWLPELPALP 391

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
                  L   ++RK+  ++ ++    + A ++K  ++     +        ++++   +
Sbjct: 392 TKADTGQLASLTIRKILCFREETYKKEISALEKKQLAVKKDLSRIKEYTIKYLQDLLNRY 451

Query: 487 SKSTDLGRRRTTFCEVSR 504
           +    LG+R+T   +   
Sbjct: 452 A---HLGKRKTQITQFKN 466


>gi|309753210|gb|ADO85628.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 75/106 (70%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           HGD S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 61  HGDASIYYTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|114228541|gb|ABI58275.1| DNA topoisomerase IV subunit A [Shigella sonnei]
          Length = 115

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/115 (55%), Positives = 86/115 (74%), Gaps = 1/115 (0%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK 
Sbjct: 1   ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 60

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVA 140
           HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ A
Sbjct: 61  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYA 115


>gi|52630911|gb|AAU84919.1| DNA topoisomerase IV subunit [Proteus mirabilis]
          Length = 118

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 60/118 (50%), Positives = 84/118 (71%), Gaps = 1/118 (0%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  
Sbjct: 1   DGLKPVQRRIVYAMSELGLNSSAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSY 60

Query: 108 RYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           RYPLI GQGN+G  D   S AA RYTE+R+++ ++++L  +    VD+   ++    E
Sbjct: 61  RYPLIDGQGNWGAPDDPKSFAAMRYTESRLSKYSQILLSELGHGTVDWIPNFDGTLQE 118


>gi|185178912|ref|ZP_02964680.1| DNA gyrase/topoisomerase IV, A subunit [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|184209172|gb|EDU06215.1| DNA gyrase/topoisomerase IV, A subunit [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
          Length = 126

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 62/125 (49%), Positives = 87/125 (69%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEAR 135
           YTE R
Sbjct: 122 YTETR 126


>gi|47059210|gb|AAT09328.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 115

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 69/115 (60%), Positives = 90/115 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|47419994|gb|AAT27349.1| DNA gyrase A [Campylobacter coli]
          Length = 493

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 98/477 (20%), Positives = 184/477 (38%), Gaps = 42/477 (8%)

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ RR+
Sbjct: 1   KREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRT 59

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILN 433
            F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F LTE Q +AIL+
Sbjct: 60  IFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAILD 119

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++L  L  LE  +I++EL  L+ E  ++D +L S     N I  E++E+K  F       
Sbjct: 120 MKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKFDVPRITQ 179

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
                               +       +           K       A+   + D ++ 
Sbjct: 180 IEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIES 239

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---Y 608
              A+T D ++ ++  G+ Y L    +        G+A+  LI+L  ++ I+       +
Sbjct: 240 FFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDF 299

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-------- 660
           D    L   +  G       SE       G   + +   +++   + V  D         
Sbjct: 300 DENKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTAIIVQRDENEETGLLD 359

Query: 661 -----------------------VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
                                  +  V +    + F + ++ E+ R  +GV    +K+  
Sbjct: 360 DDSLNDENTNSDENLIESIKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKN 419

Query: 697 ISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              V    I  +    +  + +   +  N     L  RGG G +  K   ++ + +S
Sbjct: 420 DELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTDKTKELIS 476


>gi|156628732|gb|ABU89283.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628738|gb|ABU89286.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628740|gb|ABU89287.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628742|gb|ABU89288.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628744|gb|ABU89289.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 112

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 63/112 (56%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD 
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELI 143
           + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ AEL+
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELL 112


>gi|47419986|gb|AAT27345.1| DNA gyrase A [Campylobacter coli]
          Length = 493

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 97/471 (20%), Positives = 182/471 (38%), Gaps = 42/471 (8%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ RR+ F +Q 
Sbjct: 6   EIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIFELQK 64

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N         S   +F LTE Q +AIL+++L  L
Sbjct: 65  ARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAILDMKLGRL 124

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  +I++EL  L+ E  ++D +L S     N I  E++E+K  F             
Sbjct: 125 TGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKFDVPRITQIEDDYD 184

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
                         +       +           K       A+   + D ++    A+T
Sbjct: 185 DIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANT 244

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D ++ ++  G+ Y L             G+A+  LI+L  ++ I+       +D    L
Sbjct: 245 HDTLMFVTDRGQLYWLKVYKXPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDFDENKSL 304

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-------------- 660
              +  G       SE       G   + +   +++   + V  D               
Sbjct: 305 CFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTAIIVQRDENEETGLLDDDSLND 364

Query: 661 -----------------VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
                            +  V +    + F + ++ E+ R  +GV    +K+     V  
Sbjct: 365 ENTNSDENLIESIKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGA 424

Query: 703 FKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             I  +    +  + +   +  N     L  RGG G +  K   ++ + +S
Sbjct: 425 VVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTDKTKELIS 475


>gi|297242345|gb|ADI24845.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 67/122 (54%), Positives = 89/122 (72%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDAIEKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|297242349|gb|ADI24847.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 66/122 (54%), Positives = 89/122 (72%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+ + K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDALKKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|313192105|emb|CBX19912.1| gyrase A [Clostridium perfringens]
          Length = 263

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 107/265 (40%), Positives = 170/265 (64%), Gaps = 3/265 (1%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMA
Sbjct: 1   MRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMA 60

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G
Sbjct: 61  TNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKG 119

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +
Sbjct: 120 RIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDRE 178

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +
Sbjct: 179 GMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQ 237

Query: 369 REVLFRRSSFRMQAIDRRVEILKGL 393
           ++V+ RR+ F +     R  IL+GL
Sbjct: 238 KDVITRRTQFELNKAKERAHILEGL 262


>gi|321268250|gb|ADW78933.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 113

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 61/113 (53%), Positives = 88/113 (77%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLY 113


>gi|297242335|gb|ADI24840.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 67/122 (54%), Positives = 89/122 (72%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDAIKKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|321268262|gb|ADW78939.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 238

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 78/197 (39%), Positives = 115/197 (58%), Gaps = 13/197 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    E+ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKEL--- 104

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               + K A +VG  + + HPHGD S+ D++V++ Q    R  LI  QGN+GNI  GDSA
Sbjct: 105 DDGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++ A  +L        D+  +Y+   +EP   P KFP LLA+G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVLY--SPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 187 MATSIPSHNVQEICEAA 203
           ++T +  HN  E+ +A+
Sbjct: 218 LSTKVLPHNFNELIDAS 234


>gi|254718873|ref|ZP_05180684.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 305

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 168/305 (55%), Positives = 227/305 (74%)

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I+ E D+L AEK  ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      
Sbjct: 1   EIRKEFDDLTAEKTDLEGLLASGTRQWKKISAEIKAVREKFGPTTRLGKRRTTFAHAPMH 60

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           D   + QAMIE+EP+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L 
Sbjct: 61  DLEDIHQAMIEREPVTIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLF 120

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
            +T GK +T+ A  L  GRGHGE I++L+D+ ++QDI+TAFV+D + KLL+VS +GN FI
Sbjct: 121 FTTGGKFFTIGANTLPGGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFI 180

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           V ESE +ANTRKGK  + V + ++ KL  +V+GDH+AVVGENRK+L+F +  IPEM+RGK
Sbjct: 181 VPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGK 240

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVRLQ YKDGG+ DV  F I +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFP
Sbjct: 241 GVRLQKYKDGGVCDVRTFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFP 300

Query: 746 RSGKF 750
           RSGKF
Sbjct: 301 RSGKF 305


>gi|110590001|gb|ABG77447.1| topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 120

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 85/120 (70%), Gaps = 1/120 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE+R+++ +EL+L  + +   D+   ++    EP + P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPA 120


>gi|7532891|gb|AAF63268.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532893|gb|AAF63269.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532895|gb|AAF63270.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532897|gb|AAF63271.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532931|gb|AAF63288.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532933|gb|AAF63289.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532935|gb|AAF63290.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532937|gb|AAF63291.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532939|gb|AAF63292.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 106

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 84/106 (79%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+
Sbjct: 1   ALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ +
Sbjct: 61  AQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDI 106


>gi|255030145|ref|ZP_05302096.1| DNA gyrase subunit A [Listeria monocytogenes LO28]
          Length = 519

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 89/438 (20%), Positives = 184/438 (42%), Gaps = 27/438 (6%)

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           + ++T F +NM  L     P+V+ L  IL  +L H++ V+ RR+ F ++  + R  IL+G
Sbjct: 1   TALQTTFGINMLALVD-NHPKVLNLKEILYYYLEHQKVVIRRRTEFELRKAEARAHILEG 59

Query: 393 LLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
           L IA  NID II +IR           ++++F+L++ Q  AIL++RL+ L  LE  +I+ 
Sbjct: 60  LRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAILDMRLQRLTGLEREKIEE 119

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E  NL+A    + ++L   ++    I  E+ E+K  ++      +RRT     +    + 
Sbjct: 120 EYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD-----KRRTEIL--AGDLVSL 172

Query: 510 LQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
             + +I +E + + ++ RG+I+          +     +  +   E D ++  +   T D
Sbjct: 173 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHD 232

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLV 616
            +L  +  GK Y      +       +   I  L+ +   + +        +     L  
Sbjct: 233 TLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFTDDSYLFF 292

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            +  G       S+     + G   +++   +++  V    G  ++ +  ++ + + F  
Sbjct: 293 TTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPE 352

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + I  M R   GVR    ++     +    + +    +    + Y +        L  RG
Sbjct: 353 ENIRVMGRTAAGVRGIRLREDDEV-IGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRG 411

Query: 735 GVGSLVPKGFPRSGKFLS 752
           G+G        ++G  ++
Sbjct: 412 GMGVKTVTITEKNGNLVA 429



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K     L A+  +E D L        +  +++ +  G++   P  N+        A    
Sbjct: 309 KIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTA-AGVRG 367

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           I L  + +++   V +   K+LVV+ KG       S+     R G   KT         +
Sbjct: 368 IRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNL 427

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  VTG+  + ++  +  L+ F ID + +  R   GV+L    +      + 
Sbjct: 428 VAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 481


>gi|269838905|ref|YP_001950213.2| type IIA topoisomerase [Ralstonia phage RSL1]
 gi|239793701|dbj|BAG41783.2| type IIA topoisomerase [Ralstonia phage RSL1]
          Length = 514

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 106/491 (21%), Positives = 208/491 (42%), Gaps = 18/491 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +V   SL+         Y  +   +R++PDL DG KPV RRI+ + S+        F+
Sbjct: 18  DRHVVDESLKDFGRRNMTIYGTTVNLDRSVPDLYDGLKPVQRRILWSASQ---VCRTQFE 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+ G  +G  HPHG+ ++Y + V + Q      P + G+GNFG++  D AAA RYT 
Sbjct: 75  KSARLTGHCMGAYHPHGNSAIYSAAVNMVQHPS---PTLLGKGNFGSMT-DGAAAERYTN 130

Query: 134 ARMTQVAELIL--QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            R++   +       ++ +   F   Y+++D EPV  P++ PN+L NG  GI VG+ T +
Sbjct: 131 VRLSHYGQTFFDSDYINAETTSFVPNYDDKDVEPVTLPAQLPNVLLNGGEGIGVGITTKL 190

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+   + + E    +    ++      + +       GG +V S+E+  +  ++  G   
Sbjct: 191 PTFTPESVLEVLNRMFKGEKLQAVDFAKTLKY-HHKWGGQLVRSKENQAQWKQMFVGSMA 249

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI---PLLEDIRDESAED 308
                 V ++ R    + ++  P        ++K+  +    +          + E    
Sbjct: 250 NLQFEAVLDLDRDHKRMTISSWPPGTNLETFMKKVRAMPECHKCFNSKGTTTYQIECKPG 309

Query: 309 VRIVLFPKNRSLDPDL-LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
                F K         +    F ++           V +       + +  ++ +W   
Sbjct: 310 FNYDQFDKFVEKVRKATMQRQAFKINVTRREAKTVDGVTTFKTEFLALSVPDLILQWCRM 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           R  +  +  ++R++  +  +   K L+ A   +D I   +R    P   +     +T  Q
Sbjct: 370 RVALELKSLAYRIKKQEAAIAYSKLLIYAVDKLDLIFKALRQS-DPDASLQKLLKITAEQ 428

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+L++R L KL++ ++K  L     E +++ +     K Q   +  ++  V++   
Sbjct: 429 AKQILDLQVRKLSKLDQSKLKGTLKTQEQELKQLQTWQAKPKAQ---VLLDLAAVQQALD 485

Query: 488 KSTDLGRRRTT 498
           K  +   + +T
Sbjct: 486 KDRNFKLKEST 496


>gi|134141865|gb|ABO61327.1| topoisomerase IV subunit [Listonella anguillarum]
          Length = 128

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 62/128 (48%), Positives = 92/128 (71%), Gaps = 1/128 (0%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRII+AMSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ G
Sbjct: 1   RRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDG 60

Query: 115 QGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           QGN+G  D   S AA RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P
Sbjct: 61  QGNWGAPDDPKSFAAMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARLP 120

Query: 174 NLLANGTS 181
           ++L NG +
Sbjct: 121 HILLNGVT 128


>gi|62125791|gb|AAX63809.1| topoisomerase II subunit A [Haemophilus quentini]
          Length = 121

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 66/121 (54%), Positives = 88/121 (72%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNTANKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           + AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIA
Sbjct: 61  APAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIA 120

Query: 185 V 185
           V
Sbjct: 121 V 121


>gi|297242313|gb|ADI24829.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 67/122 (54%), Positives = 89/122 (72%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDAIDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|297242347|gb|ADI24846.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 67/120 (55%), Positives = 89/120 (74%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA 
Sbjct: 3   KKYVKSARVVGDAISKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 62

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 63  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|219815943|gb|ACL37058.1| GyrA [Salmonella enterica]
          Length = 104

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/104 (62%), Positives = 84/104 (80%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+V
Sbjct: 1   EEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           IGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 61  IGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 104


>gi|47419998|gb|AAT27351.1| DNA gyrase A [Campylobacter coli]
          Length = 498

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 96/471 (20%), Positives = 184/471 (39%), Gaps = 42/471 (8%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ RR+ F +Q 
Sbjct: 6   EIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIFELQK 64

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N         S   +F LTE Q +AIL+++L  L
Sbjct: 65  ARARAHILEGLKIALDNIDEVIALIKNSPDNATARDSLVAKFGLTELQANAILDMKLGRL 124

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  +I++EL  L+ E  ++D +L S     N I  E++E++  F             
Sbjct: 125 TGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYD 184

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
                         +       +           K       A+   + D ++    A+T
Sbjct: 185 DIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANT 244

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D ++ ++  G+ Y L    +        G+A+  LI+L  ++ I+       +D +  L
Sbjct: 245 HDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDFDESKSL 304

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-------------- 660
              +  G       SE       G   + +   +++   + V  D               
Sbjct: 305 CFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDENEEVELLDDDNFND 364

Query: 661 -----------------VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
                            +  V +    + F + ++ E+ R  +GV    +K+     V  
Sbjct: 365 ENINPDENAIESVKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGA 424

Query: 703 FKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             I  +    +  + +   +  N     L  RGG G +  K   ++ + +S
Sbjct: 425 VVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTDKTKELIS 475


>gi|156628726|gb|ABU89280.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 114

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 63/114 (55%), Positives = 86/114 (75%), Gaps = 1/114 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD 
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA  YTE+R+++ AEL+L 
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMCYTESRLSKYAELLLS 114


>gi|11095196|gb|AAG29770.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 106

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 84/106 (79%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+
Sbjct: 1   ALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDFSIYEAMVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ +
Sbjct: 61  AQWWSYRHLLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDI 106


>gi|21666246|gb|AAM73627.1|AF363611_1 DNA topoisomerase IV subunit [Proteus mirabilis]
          Length = 116

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 58/116 (50%), Positives = 82/116 (70%), Gaps = 1/116 (0%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY
Sbjct: 1   LKPVQRRIVYAMSELGLNSSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRY 60

Query: 110 PLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           PLI GQGN+G  D   S AA RYTE+R+++ ++++L  +    VD+   ++    E
Sbjct: 61  PLIDGQGNWGAPDDPKSFAAMRYTESRLSKYSQILLSELGHGTVDWIPNFDGTLQE 116


>gi|297242315|gb|ADI24830.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/120 (55%), Positives = 89/120 (74%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA 
Sbjct: 3   KKYVKSARVVGDAIDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 62

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 63  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|312232294|gb|ADQ53543.1| topoisomerase IV [Escherichia coli]
          Length = 113

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 62/113 (54%), Positives = 85/113 (75%), Gaps = 1/113 (0%)

Query: 32  AYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGD 91
            Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD
Sbjct: 1   NYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGD 60

Query: 92  QSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELI 143
              Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+
Sbjct: 61  SPCYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELL 113


>gi|7021435|gb|AAF35344.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021437|gb|AAF35345.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021439|gb|AAF35346.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021441|gb|AAF35347.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532941|gb|AAF63293.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532943|gb|AAF63294.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532945|gb|AAF63295.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532947|gb|AAF63296.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532949|gb|AAF63297.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 124

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/123 (43%), Positives = 86/123 (69%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  
Sbjct: 1   DGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKN 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   +++ + EP V
Sbjct: 61  REILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTV 120

Query: 168 FPS 170
            P+
Sbjct: 121 LPA 123


>gi|82502210|gb|ABB80133.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 115

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 68/115 (59%), Positives = 89/115 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA  YTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMCYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|296005999|gb|ADG65216.1| gyrase subunit A [Mycobacterium tuberculosis]
          Length = 105

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 74/103 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HPH
Sbjct: 1   YIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           GD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYT
Sbjct: 61  GDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYT 103


>gi|110589997|gb|ABG77445.1| topoisomerase IV subunit [Shigella flexneri]
 gi|110589999|gb|ABG77446.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590003|gb|ABG77448.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590005|gb|ABG77449.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590007|gb|ABG77450.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590009|gb|ABG77451.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590011|gb|ABG77452.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590013|gb|ABG77453.1| topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 120

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 85/120 (70%), Gaps = 1/120 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE+R+++ +EL+L  + +   D+   ++    EP + P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPA 120


>gi|297242383|gb|ADI24864.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 67/122 (54%), Positives = 89/122 (72%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               F KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKFVKSARVVGDAIVKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ ++F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETINFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|297242323|gb|ADI24834.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 66/122 (54%), Positives = 88/122 (72%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+   K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDAPDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|21666248|gb|AAM73628.1|AF363612_1 DNA topoisomerase IV subunit [Providencia stuartii]
          Length = 116

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 58/116 (50%), Positives = 83/116 (71%), Gaps = 1/116 (0%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI++AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY
Sbjct: 1   LKPVQRRIVYAMSELGLNNTAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRY 60

Query: 110 PLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           PL+ GQGN+G  D   S AA RYTE+R+++ AE++L  +    VD+   ++   +E
Sbjct: 61  PLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAEVLLSELAHGTVDWIPNFDGTLNE 116


>gi|297242321|gb|ADI24833.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 122

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 68/120 (56%), Positives = 89/120 (74%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSAR+VG+ IGK HPHGD +VYD +VR+AQPF  RY L+ GQGNFG+IDGD+ AA 
Sbjct: 2   KKYVKSARVVGDAIGKYHPHGDSAVYDKIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 61

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 62  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 121


>gi|329942344|ref|ZP_08291154.1| DNA gyrase/topoisomerase IV, subunit A family protein
           [Chlamydophila psittaci Cal10]
 gi|332286985|ref|YP_004421886.1| DNA topoisomerase IV subunit A [Chlamydophila psittaci 6BC]
 gi|313847582|emb|CBY16570.1| putative DNA gyrase subunit A or topoisomerase IV subunit A
           [Chlamydophila psittaci RD1]
 gi|325506857|gb|ADZ18495.1| DNA topoisomerase IV subunit A [Chlamydophila psittaci 6BC]
 gi|328815254|gb|EGF85242.1| DNA gyrase/topoisomerase IV, subunit A family protein
           [Chlamydophila psittaci Cal10]
 gi|328914216|gb|AEB55049.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila psittaci 6BC]
          Length = 479

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 121/505 (23%), Positives = 214/505 (42%), Gaps = 43/505 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +    +  ++ YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DVSELFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFCM---DDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGYLIDMQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ IL   + D + F D+Y+  D EP + P+K P LL +G  GIAVGM T I  HN+ E+
Sbjct: 115 AKEIL--FNTDLMSFHDSYDGRDKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A        I     + + PDF +GG++  S       Y+ G G   +RA     
Sbjct: 173 IEAQIA--------ILNNRAFTLLPDFYSGGVMDASE------YQDGLGSITMRASIQTV 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       +++ EI        LI  I        I +  D   + + D   +     + 
Sbjct: 219 DQKT----LIIKEICPSTTTETLIRSIENAAKRGVIKI--DSIQDFSTDQPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFR 374
           +    ++E +F  ++ +               P    +  ILK          ++E+   
Sbjct: 273 VYAKDIIEPLFQHTECQVVLTSR-PTAIYNNKPIETSVSEILKLHTEVLEGYLQQELQIL 331

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
                 +   + +E +      Y  + E ++ ++N+   + +  +  +     + ++  +
Sbjct: 332 HDELAQEHYYKSLEYIFIKHRLYDTVRENLSKLKNKVSQEDLHEAVLTALAPFLSSLPEI 391

Query: 435 RLRSLRKLE-----EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE-IREVKEIFSK 488
             +           +  +    ++   +   I+    + K+  + +    I+ +K + +K
Sbjct: 392 PSKQATGQLASLAIKKILCFNENSYTKDLATIEKKQAAVKKDLSNMKKFTIKYLKGLLAK 451

Query: 489 STDLGRRRTTFCEVSRADKATLQQA 513
             +LG+R+T     S+  K+ L+Q 
Sbjct: 452 YGELGKRKTQVLSFSKQKKSILKQQ 476


>gi|47419988|gb|AAT27346.1| DNA gyrase A [Campylobacter coli]
          Length = 498

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 97/471 (20%), Positives = 183/471 (38%), Gaps = 42/471 (8%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ RR+ F +Q 
Sbjct: 6   EIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIFELQK 64

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N         S   +F LTE Q +AIL+++L  L
Sbjct: 65  ARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAILDMKLGRL 124

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  +I++EL  L+ E  ++D +L S     N I  E++E+K  F             
Sbjct: 125 TGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKFDVLRITQIEDDYD 184

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
                         +       +           K       A+   + D ++    A+T
Sbjct: 185 DIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANT 244

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D ++ ++  G+ Y L    +        G+A+  LI+L  ++ I+       +D    L
Sbjct: 245 HDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDFDENKSL 304

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-------------- 660
              +  G       SE       G   + +   +++   + V  D               
Sbjct: 305 CFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTAIIVQRDENEETGLLDDDSLND 364

Query: 661 -----------------VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
                            +  V +    + F + ++ E+ R  +GV    +K+     V  
Sbjct: 365 ENTNSDENLIESIKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGA 424

Query: 703 FKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             I  +    +  + +   +  N     L  RGG G +  K   ++ + +S
Sbjct: 425 VVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTDKTKELIS 475


>gi|208972196|gb|ACI32676.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 119

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 65/119 (54%), Positives = 85/119 (71%), Gaps = 1/119 (0%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
              E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+
Sbjct: 1   EFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVL 60

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAE 141
           GK HPHGD + Y ++V +AQPF  RYPL+ GQGN G  D   S AA RYTE+R+++ AE
Sbjct: 61  GKYHPHGDSACYKAMVLMAQPFSYRYPLVDGQGNGGAPDDPKSFAAMRYTESRLSKDAE 119


>gi|312232292|gb|ADQ53542.1| topoisomerase IV [Escherichia coli]
          Length = 113

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 62/113 (54%), Positives = 85/113 (75%), Gaps = 1/113 (0%)

Query: 32  AYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGD 91
            Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD
Sbjct: 1   NYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGD 60

Query: 92  QSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELI 143
            + Y ++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+
Sbjct: 61  IACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELL 113


>gi|332141548|ref|YP_004427286.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551570|gb|AEA98288.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
          Length = 545

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 124/360 (34%), Gaps = 28/360 (7%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL  L  LE  +I  E   LL    ++  +LNS ++    I  E+ 
Sbjct: 88  YYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQLLELIAELLHILNSPERLMEVIQEELE 147

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           ++++ F           +               +       V         + +      
Sbjct: 148 KIRDEFGDERRTEITAASHDIDIEDLIEQEDVVVTLSREGYVKYQKLTDYEAQRRGGRGK 207

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNH 598
           SA   K+ D ++  L A+T D IL  ST G+ Y L    L        G  I  ++ L  
Sbjct: 208 SATKMKDEDIIERLLVANTHDHILCFSTRGRLYWLKVYQLPFASRNARGRPIVNILPLED 267

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I        ++    +L+ ++ G     + S        G   + ++  +++  V  
Sbjct: 268 NERITAILPIKEFEEGKYVLMATANGTVKKTDLSLYSRPRSSGIIAVNLNEGDELIGVDI 327

Query: 656 VTG-DHVAVVGENRKLLIFSID--------------------QIPEMSR-GKGVRLQSYK 693
             G D + +  +  K++ F+                       +  M R   GVR    +
Sbjct: 328 THGDDDIMLFSDAGKVVRFNEKLRDSETGEVKRDPETGEELLALRPMGRTATGVRGIRLQ 387

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           DG     +     +G   + +    + +           R   G +  K   R+GK + +
Sbjct: 388 DGQKVVSLIVPKGDGP-VLTATENGFGKRTPLEDYPAKSRATQGVVSIKVSERNGKVVGA 446


>gi|62184673|ref|YP_219458.1| DNA topoisomerase IV subunit A [Chlamydophila abortus S26/3]
 gi|62147740|emb|CAH63484.1| putative DNA gyrase subunit A or topoisomerase IV subunit A
           [Chlamydophila abortus S26/3]
          Length = 479

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 120/511 (23%), Positives = 215/511 (42%), Gaps = 55/511 (10%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +    +  ++ YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DVSELFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFCM---DDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN   GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGYLIDMQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ IL   + D + F D+Y+  D EP + P+K P LL +G  GIAVGM T I  HN+ E+
Sbjct: 115 AKEIL--FNTDLMSFHDSYDGRDKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A        I     + + PDF +GG++  S       Y+ G G   +RA     
Sbjct: 173 IEAQIA--------ILNNRAFTLLPDFYSGGVMDASE------YQDGLGSITMRASIQTV 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       +++ EI        LI  I        I +  D   + + D   +     + 
Sbjct: 219 DQKT----LIIKEICPSTTTETLIRSIENAAKRGVIKI--DSIQDFSTDQPHIEIKLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFR 374
           +    ++E +F  ++ +               P    +  ILK          ++E+   
Sbjct: 273 VYAKDIIEPLFQYTECQVVLTSR-PTAIYNNKPVETSISEILKLHTEVLEGYLQKELEIL 331

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL----------- 423
           +     +   + +E +      Y  +   ++ ++N    + +  +  +            
Sbjct: 332 QDELAQEHYYKSLEYIFIKYRLYDTVRANLSKLKNTVSQEDLHAAVLTALAPFLSSLPTI 391

Query: 424 -TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++     + +L ++ +    E +   +L  +  ++  ++  L++ K+        ++ +
Sbjct: 392 PSKQATGQLASLAIKKILCFNENRYTKDLAAIEKKQAAVNKDLSNMKKFT---IKYLKGL 448

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
              +    +LG+R+T     S+  K+ L+Q 
Sbjct: 449 SAKYG---ELGKRKTQVLSFSKQKKSILKQQ 476


>gi|319827182|gb|ADV74809.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 117

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/117 (51%), Positives = 89/117 (76%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DG
Sbjct: 1   LGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           D AAA RYTEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG 
Sbjct: 61  DGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 117


>gi|15215561|gb|AAK91512.1| gyrase subunit A [Campylobacter coli]
          Length = 109

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 64/107 (59%), Positives = 85/107 (79%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+KKSARIV
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           G+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD A
Sbjct: 63  GDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGA 109


>gi|3914279|sp|O68891|PARC_ENTSA RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3046560|gb|AAC13493.1| DNA topoisomerase IV subunit C [Citrobacter freundii]
 gi|3046562|gb|AAC13494.1| DNA topoisomerase IV subunit C [Cronobacter sakazakii]
          Length = 110

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 61/110 (55%), Positives = 84/110 (76%), Gaps = 1/110 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELI 143
           Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELL 110


>gi|284154632|gb|ADB78417.1| DNA gyrase [Bacillus mojavensis]
          Length = 189

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 96/190 (50%), Positives = 132/190 (69%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +V +S VR+AQ F     L+ G GNFG +DGDSAAA RY EARM ++A  IL+ + +D
Sbjct: 1   DFAVXESXVRMAQDFNYVICLVDGHGNFGXVDGDSAAAMRYXEARMXKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMELIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|7021443|gb|AAF35348.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 124

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 53/123 (43%), Positives = 86/123 (69%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  
Sbjct: 1   DGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKN 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   +++ + EP V
Sbjct: 61  REILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTV 120

Query: 168 FPS 170
            P+
Sbjct: 121 LPA 123


>gi|321268246|gb|ADW78931.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268254|gb|ADW78935.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 112

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 60/112 (53%), Positives = 87/112 (77%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           HRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ 
Sbjct: 1   HRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVD 60

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP
Sbjct: 61  GQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 112


>gi|92919084|gb|ABE96893.1| DNA gyrase A subunit [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 98

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 79/98 (80%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+VG+VIGK HPHGD +VYD+
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARVVGDVIGKYHPHGDTAVYDT 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE R
Sbjct: 61  IVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIR 98


>gi|15215563|gb|AAK91513.1| gyrase subunit A [Campylobacter coli]
 gi|15215565|gb|AAK91514.1| gyrase subunit A [Campylobacter coli]
          Length = 109

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 64/107 (59%), Positives = 85/107 (79%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+KKSARIV
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           G+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD A
Sbjct: 63  GDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGA 109


>gi|312192225|gb|ADQ43809.1| topoisomerase IV subunit A [Aerococcus sanguinicola]
          Length = 116

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 57/116 (49%), Positives = 80/116 (68%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPV RRI++AM   G      F+KSA+ VG VIG  HPHGD SVYD++VR++
Sbjct: 1   LPDIRDGLKPVQRRILYAMFVDGNTSSHNFRKSAKTVGNVIGNYHPHGDSSVYDAMVRMS 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           Q +  R  LI   GN G++DGD AAA RYTEAR++++A+ +L  +D+  V+    +
Sbjct: 61  QDWKNREVLIEMHGNNGSMDGDPAAAMRYTEARLSKIADELLADLDKQTVETMLNF 116


>gi|319827180|gb|ADV74808.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|319827184|gb|ADV74810.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|319827186|gb|ADV74811.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 117

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 60/117 (51%), Positives = 89/117 (76%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DG
Sbjct: 1   LGVTPDKPHKKSARITGDVMGKYHPHGDLSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           D AAA RYTEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG 
Sbjct: 61  DGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 117


>gi|321268236|gb|ADW78926.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268238|gb|ADW78927.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268248|gb|ADW78932.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268252|gb|ADW78934.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 113

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 60/113 (53%), Positives = 87/113 (76%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ G
Sbjct: 1   RRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           QGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V
Sbjct: 61  QGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKV 113


>gi|315928687|gb|EFV07969.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 305]
          Length = 537

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 169/460 (36%), Gaps = 47/460 (10%)

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
              + +    + P++  L  +L  +L HR+ V+ RR+ F +Q    R  IL+GL IA  N
Sbjct: 5   FGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDN 64

Query: 400 IDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           IDE+IA+I+N         S   +F L+E Q +AIL+++L  L  LE  +I++EL  L+ 
Sbjct: 65  IDEVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK 124

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E  +++ +L S     N I  E++E++  F                           +  
Sbjct: 125 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 184

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +           K       A+   + D ++    A+T D ++ ++  G+ Y L 
Sbjct: 185 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 244

Query: 577 AGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI 631
              +        G+A+  LI+L   + I+       +D +  L   +  G       SE 
Sbjct: 245 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEY 304

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKV--TGDHV---------------------------- 661
                 G   + +   +++   + V    D +                            
Sbjct: 305 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 364

Query: 662 -------AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWI 712
                    V +    + F + ++ E+ R  +GV    +K+     V    I  +    +
Sbjct: 365 STQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEIL 424

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + +   +  N     L  RGG G +  K   ++   +S
Sbjct: 425 SISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLIS 464


>gi|309049|gb|AAC36878.1| DNA gyrase A subunit [Mycobacterium tuberculosis H37Rv]
 gi|740009|prf||2004291A DNA gyrase:SUBUNIT=A
          Length = 107

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/107 (60%), Positives = 81/107 (75%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEAR+T +A  +
Sbjct: 1   GKYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEM 60

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 61  LREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 107


>gi|53854901|gb|AAU95770.1| topoisomerase II [Paramecium bursaria Chlorella virus Marburg 1]
          Length = 1058

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 82/458 (17%), Positives = 172/458 (37%), Gaps = 45/458 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                ++++   + +   +++  + ++     ER+IP + DG KP  R+I+ A  +  L  
Sbjct: 615  PGNQLDQSKTNIPVPDFIDKELILFSRYD-VERSIPSVVDGLKPSQRKILFAAFKRNLTN 673

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A+  G V      H HG+QS+  ++V +AQ +       L+   G FG+    
Sbjct: 674  E---MKVAQFSGYVAEHSGYH-HGEQSLQGAIVGMAQDYVGSNNMNLLLPNGQFGSRLLG 729

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  +A+ RY   +++     +    D+  + + +  +    EP  +    P LL NG +G
Sbjct: 730  GKDSASARYIFTKLSPATRQVFNQSDDVLLKYLED-DGSSIEPEWYVPAIPFLLVNGANG 788

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T IPS+N ++I +    LI   E+                     +     +  
Sbjct: 789  IGTGFSTDIPSYNPKDIIDNVKRLISGKEMVPM--------------TPWYKGFTGTIVQ 834

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
               G    +  A+            +VV+E+P     S   + +  L+  K I    +  
Sbjct: 835  NDNGTFTCKGVAKV-------NGKVVVVSELPIGTWTSDYKDFLEGLVEKKVIVDFREKH 887

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
             E            +   D  +L     + +     F          ++ +      I++
Sbjct: 888  TEKNVMFE---IDYSGEPDISILKLEKVIRTTNMHAFDPQG------KIKKYADPLDIIR 938

Query: 363  EWLAHRREVLFRRSSFRMQAIDRR---VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +W   RRE   +R ++ ++ +  +    E     +   +N + +++          +   
Sbjct: 939  DWFEVRREFYTKRKNYLLKDLSHKAAIAENKHRFITLIVNDELVLSKKTESVILSELRTL 998

Query: 420  RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            +F  +E     +L++ + SL      +++ E + L  E
Sbjct: 999  KFYKSEGSYKYLLDMSISSLTLERAEKLRIEAEKLKKE 1036


>gi|321268256|gb|ADW78936.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 111

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 59/111 (53%), Positives = 86/111 (77%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ G
Sbjct: 1   RRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           QGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP
Sbjct: 61  QGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 111


>gi|15215559|gb|AAK91511.1| gyrase subunit A [Campylobacter coli]
          Length = 108

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 63/106 (59%), Positives = 84/106 (79%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+KKSARIV
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           G+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD 
Sbjct: 63  GDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDG 108


>gi|218672927|ref|ZP_03522596.1| DNA topoisomerase IV subunit A [Rhizobium etli GR56]
          Length = 305

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 171/304 (56%), Positives = 228/304 (75%)

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
             +   L EK +I++LL S  +QW  +A EI EVK+ F+K+T++GRRRT F +   AD+ 
Sbjct: 2   QGVRRTLKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEQ 61

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
            +QQAMIEKEPITVVIS +GWIR+LK H  D + L FKEGD LK+A  A TTD+IL+++T
Sbjct: 62  AIQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKVAFPAQTTDKILIVTT 121

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GKA+TL    L  GRGHGE +++++D++++Q ++TAFV+D   K L+VS+ GN F+V E
Sbjct: 122 GGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPARKQLIVSTAGNGFVVAE 181

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVR 688
           +E++ANTRKGK  + V+  E+ +L+V V GDHVAVVGENRKLL+F + Q+PEMSRGKGVR
Sbjct: 182 AELVANTRKGKQIMNVALPEETQLLVPVCGDHVAVVGENRKLLVFPLAQVPEMSRGKGVR 241

Query: 689 LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           LQ YKDGGISDV CF I +GL W DSAGR++ +++++L  WLG R   G  VPKGFPRSG
Sbjct: 242 LQRYKDGGISDVRCFAISDGLVWEDSAGRTFTKNKDELAEWLGDRASAGRTVPKGFPRSG 301

Query: 749 KFLS 752
           KF  
Sbjct: 302 KFAG 305


>gi|155370647|ref|YP_001426181.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella virus
            FR483]
 gi|155123967|gb|ABT15834.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella virus
            FR483]
          Length = 1058

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 83/458 (18%), Positives = 176/458 (38%), Gaps = 45/458 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                ++++   + +   +++  + ++     ER+IP + DG KP  R+I+ A  +  L  
Sbjct: 615  PGNQLDQSKTNIPVPDFIDKELILFSRYD-VERSIPSVVDGLKPSQRKILFAAFKRNLVQ 673

Query: 69   GAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A+  G V  I   H HG+QS+  ++V +AQ +       L+   G FG+    
Sbjct: 674  E---IKVAQFSGYVSEISGYH-HGEQSLQGAIVGMAQDYVGSNNMNLLLPNGQFGSRLLG 729

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  +A+ RY   +++ V   +    D+  + + +  +    EP  +    P LL NG +G
Sbjct: 730  GKDSASARYIFTKLSPVTRQVFNQADDVLLKYLED-DGSSIEPEWYVPAIPFLLVNGANG 788

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T IPS+N ++I +    LI   E+                  +    +E     
Sbjct: 789  IGTGFSTDIPSYNPKDIIDNVKRLISGKEMV----------------PMSPWYKEFTGSI 832

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
             +   G F  +    V         +VV+E+P     S   + +  L+  K I    +  
Sbjct: 833  VQNDNGTFTCKGVAKVS-----GKNVVVSELPIGTWTSDYKDFLEGLVEKKVIVDFREKH 887

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
             E      +     +   D  +L     + +     F          ++ +      I++
Sbjct: 888  TEKNV---LFEIDYSGEPDISILKLEKVIRTTNMHAFDPQG------KIKKYACSLDIIR 938

Query: 363  EWLAHRREVLFRRSSFRMQAIDRR---VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +W   R+    +R ++ ++ +  +    E     +   +N + +++          +   
Sbjct: 939  DWFEVRKTFYTKRKAYLIKDLSHKAAIAENKHRFITLIVNDELVLSKKTESVILSELRTL 998

Query: 420  RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            +F  ++     +L++ + SL      +++ E + L  E
Sbjct: 999  KFYKSDGSYKYLLDMSISSLTLERAEKLRLEAEKLKKE 1036


>gi|313192095|emb|CBX19907.1| gyrase A [Clostridium perfringens]
          Length = 266

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 106/266 (39%), Positives = 170/266 (63%), Gaps = 3/266 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 4   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 63

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G   V
Sbjct: 64  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVV 122

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +   +
Sbjct: 123 RAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRM 181

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +++V+
Sbjct: 182 VIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKDVI 240

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYL 398
            RR+ F +     R  IL+GL+IA  
Sbjct: 241 TRRTQFELNKAKERAHILEGLIIALD 266


>gi|224178753|ref|XP_002198897.1| PREDICTED: similar to putative DNA gyrase subunit A; 1114-7603,
           partial [Taeniopygia guttata]
          Length = 424

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 168/373 (45%), Gaps = 52/373 (13%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +  +L YA   I ERA+P++ DG KPV RRI+H+M    L     F K A IVG  + + 
Sbjct: 52  QSWFLDYASYVILERAVPNIEDGLKPVQRRILHSM---KLLDDGRFNKVANIVGNTM-QF 107

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+Y++LV+L Q    +  L+  QGN+GN + G  AAA RY EAR++Q A     
Sbjct: 108 HPHGDASIYEALVQLGQ----KELLVETQGNWGNTLTGAGAAAGRYIEARLSQFA----- 158

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
                 +D        +                   GIAVG+++ I  HN  EI +AA++
Sbjct: 159 ------LDVVYNPKVTEW-------------TLSAEGIAVGLSSKILPHNFNEIIDAAIS 199

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +            + + PDF TGG I  SR      Y  G  G  V+ R  +E++   +
Sbjct: 200 YLRG--------EPFTLYPDFFTGGSIDVSR------YNDGERGGVVKIRAKIEKIDNKT 245

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I  TEIPY    + LIE I +   A +I +   + + +     I           D  
Sbjct: 246 LAI--TEIPYGKTTATLIESIVKAQEAGKIKIRSVVDNTAQTANVI--VYLLPGTSSDKT 301

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +D E     N  V+S  + P  + +  +L+  +   R++L +    ++  +  
Sbjct: 302 IDALYAFTDCEVSVSPNCCVISDNK-PHFIGVSDVLRHNVDRTRDILGQELRIQLGEVRE 360

Query: 386 RVEILKGLLIAYL 398
           ++       I   
Sbjct: 361 QLHFASLERIFIE 373


>gi|265983859|ref|ZP_06096594.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
 gi|264662451|gb|EEZ32712.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 269

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 151/269 (56%), Positives = 202/269 (75%)

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           ++E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R++K H  D S
Sbjct: 1   MREKFGPTTRLGKRRTTFAHAPMHDLEDIHQAMIEREPVTIVVSEKGWLRAMKGHLADFS 60

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I++L+D+ ++QD
Sbjct: 61  TLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIRILVDMENDQD 120

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
           I+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ KL  +V+GDH+
Sbjct: 121 ILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDHI 180

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W DSA R++NR
Sbjct: 181 AVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSWQDSADRTFNR 240

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 241 SKEELVEWIGARASAGRLVPKGFPRSGKF 269


>gi|313192107|emb|CBX19913.1| gyrase A [Clostridium perfringens]
          Length = 250

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 102/253 (40%), Positives = 164/253 (64%), Gaps = 3/253 (1%)

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT
Sbjct: 1   RYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMAT 60

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G 
Sbjct: 61  NIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGR 119

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  + 
Sbjct: 120 IVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREG 178

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  ++
Sbjct: 179 MRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQK 237

Query: 370 EVLFRRSSFRMQA 382
           +V+ RR+ F +  
Sbjct: 238 DVITRRTQFELNK 250


>gi|47419990|gb|AAT27347.1| DNA gyrase A [Campylobacter coli]
          Length = 500

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 95/478 (19%), Positives = 181/478 (37%), Gaps = 43/478 (8%)

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ RR
Sbjct: 3   LKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRR 61

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F LTE Q +AIL
Sbjct: 62  TIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAIL 121

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L  L  LE  +I++EL  L+ E  ++D +L S     N I  E++E+K  F      
Sbjct: 122 DMKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKFDVPRIT 181

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                                +       +           K       A+   + D ++
Sbjct: 182 QIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIE 241

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               A+T D + +      ++ +    +        G+A+  LI+L  ++ I+       
Sbjct: 242 SFFTANTHDTL-MFVLIEDSFMVKVYKIPEGSRTAKGKAVVNLINLQADEKIMAIIPTTD 300

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH------- 660
           +D    L   +  G       SE       G   + +   +++   + V  D        
Sbjct: 301 FDENKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTAIIVQRDENEETGLL 360

Query: 661 ------------------------VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
                                   +  V +    + F + ++ E+ R  +GV    +K+ 
Sbjct: 361 DDDSLNDENTNSDENLIESIKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEK 420

Query: 696 GISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               V    I  +    +  + +   +  N     L  RGG G +  K   ++ + +S
Sbjct: 421 NDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTDKTKELIS 478


>gi|313192109|emb|CBX19914.1| gyrase A [Clostridium perfringens]
          Length = 228

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 98/226 (43%), Positives = 150/226 (66%), Gaps = 2/226 (0%)

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y 
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYE 119

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDE
Sbjct: 120 TGKGRIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDE 178

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
           S  +   ++    R  +P++ +  ++  + M+  F + M  L   +
Sbjct: 179 SDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ 224


>gi|322695778|gb|EFY87581.1| DNA topoisomerase 2 [Metarhizium acridum CQMa 102]
          Length = 1653

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 78/397 (19%), Positives = 162/397 (40%), Gaps = 21/397 (5%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K ++    + +  + ++++    R+IP + DG KP  R++++A  +  L  
Sbjct: 785  PGTFLDHSTKEITYTDFVSKELILFSMADNL-RSIPSVIDGLKPGQRKVLYACFKRNLTK 843

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E     H HG+ S+  +++ LAQ F       ++   GNFG+    G 
Sbjct: 844  DKKVVELAGYVSEHTA-YH-HGEASLQQTIIGLAQDFVGSNNINVLEPSGNFGSRLAGGS 901

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RYT  R+   A+ I   +DE  +  +   + +  EP V+    P +L NG  GI 
Sbjct: 902  DAASPRYTFTRLAPFAKKIFSPLDEACLKHQY-EDGKRIEPEVYSPILPMVLVNGADGIG 960

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IP+++  +I +     +   +    +   +       T        +       
Sbjct: 961  TGWSTTIPNYHPADIVKNLKRRMGRLDEDDAEEKPF------ETMTPWFRGWKG--NPEA 1012

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
             G   ++        +  +    I++TE+P ++       K+ ++I     P  ++D ++
Sbjct: 1013 AGPDRYKFNGIAS--QNDQNPNEIIITELPIRMWTDDFKAKLEKVISGSDGPTWIKDYKE 1070

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGIL 361
             +           +    P +L E +     +  +   +  V    R  + +   ++ IL
Sbjct: 1071 FNDHKTVHFEIMVDEKHLPKILEEGLLERFKLTKQIATSNLVAFDTRGQIRKYEKVEDIL 1130

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
            +E+  HR ++   R  + +Q  D  +E LK       
Sbjct: 1131 EEYYVHRLQMYHARKQYWLQVYDNDLEKLKNQYRFIK 1167


>gi|260100982|gb|ACX31656.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 109

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 58/109 (53%), Positives = 85/109 (77%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ G
Sbjct: 1   RRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
           QGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D ++  + 
Sbjct: 61  QGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNHDGTEK 109


>gi|297578850|ref|ZP_06940778.1| DNA gyrase, subunit A [Vibrio cholerae RC385]
 gi|297536444|gb|EFH75277.1| DNA gyrase, subunit A [Vibrio cholerae RC385]
          Length = 460

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 121/365 (33%), Gaps = 33/365 (9%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL  L  LE  +I  E   LL E   +  +L S ++    I  E+ 
Sbjct: 13  YFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELE 72

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
            ++  FS +        T         A     +       V         + +      
Sbjct: 73  AIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGK 132

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
           SA   KE D ++  L A+T D ILL ST GK Y +    L   S    G+ I  L+ L  
Sbjct: 133 SATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEE 192

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I        +     + + +  G        +       G   L +  E+ +  V  
Sbjct: 193 NERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGVDI 252

Query: 656 VTGD-HVAVVGENRKLLIFSIDQ-------------------------IPEMSR-GKGVR 688
             G+  + +  +  K++ F   +                         +  M R   GVR
Sbjct: 253 TDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVR 312

Query: 689 LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                DG     +     EG   +      Y +  +        RG  G +  K   R+G
Sbjct: 313 GMKLADGDQVVSLIVPKTEGD-VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 371

Query: 749 KFLSS 753
             + +
Sbjct: 372 SVVGA 376


>gi|321268234|gb|ADW78925.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 111

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/111 (52%), Positives = 85/111 (76%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           GNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP 
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPK 111


>gi|313192115|emb|CBX19917.1| gyrase A [Clostridium perfringens]
          Length = 242

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 158/243 (65%), Gaps = 3/243 (1%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMA
Sbjct: 3   MRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMA 62

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G
Sbjct: 63  TNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKG 121

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +
Sbjct: 122 RIVVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDRE 180

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +
Sbjct: 181 GMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQ 239

Query: 369 REV 371
           ++V
Sbjct: 240 KDV 242


>gi|121822793|gb|ABM65608.1| DNA topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 119

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/119 (50%), Positives = 85/119 (71%), Gaps = 1/119 (0%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP 
Sbjct: 61  RLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPP 119


>gi|90017826|gb|ABD83869.1| topoisomerase II subunit A [Haemophilus sp. COAD036]
 gi|90017828|gb|ABD83870.1| topoisomerase II subunit A [Haemophilus sp. COAD165]
 gi|90017830|gb|ABD83871.1| topoisomerase II subunit A [Haemophilus sp. COAD591]
          Length = 115

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 57/114 (50%), Positives = 79/114 (69%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M   G      + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDREGNTANKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           +IDGD+ AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIP 114


>gi|155122232|gb|ABT14100.1| hypothetical protein MT325_M546R [Paramecium bursaria chlorella virus
            MT325]
          Length = 1058

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 174/458 (37%), Gaps = 45/458 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                ++++   + +   +++  + ++     ER+IP + DG KP  R+I+ A  +  L  
Sbjct: 615  PGNQLDQSKTNIPVPDFIDKELILFSRYD-VERSIPSVVDGLKPSQRKILFAAFKRNLTN 673

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A+  G V      H HG+QS+  ++V +AQ +       L+   G FG+    
Sbjct: 674  E---MKVAQFSGYVAEHSGYH-HGEQSLQGAIVGMAQDYVGSNNMNLLLPNGQFGSRILG 729

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   A+ RY   +++ V   +    D+  + + +  +    EP  +    P LL NG +G
Sbjct: 730  GKDCASARYIFTKLSPVTRQVFNQADDVLLKYLED-DGSSIEPEWYVPAIPFLLVNGANG 788

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T IPS+N ++I      LI   E+                  +    +E     
Sbjct: 789  IGTGFSTDIPSYNPKDIINNVKRLISGKEMV----------------PMTPWYKEFTGSI 832

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
             +   G F  +    V         +VV+E+P     S   + +  L+  K I    +  
Sbjct: 833  VQNDNGTFTCKGVAKVS-----GKSVVVSELPIGTWTSDYKDFLEGLVEKKVIVDFREKH 887

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
             E      I     +   +PDL +  +            +      G++ +      I+ 
Sbjct: 888  TEKNVLFEI-----DFPGEPDLSILKLEKAIRTTNMHAFDP----EGKIKKYADPLDIIL 938

Query: 363  EWLAHRREVLFRRSSFRMQAIDRR---VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +W   R+    +R ++ ++ +  +    E     +   +N + +++          +   
Sbjct: 939  DWFEVRKTFYTKRKNYLLKDLSHKAAIAENKHRFITLIVNDELVLSKKTESVILSELRTL 998

Query: 420  RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            +F  +E     +L++ + SL      +++ E + L  E
Sbjct: 999  KFYKSEGSYKYLLDMSISSLTLERAEKLRIEAEKLKKE 1036


>gi|321268242|gb|ADW78929.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 112

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 59/112 (52%), Positives = 87/112 (77%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++ M ++G+   +A KKSARIVGEV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           GNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKV 112


>gi|75758773|ref|ZP_00738888.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228904159|ref|ZP_04068254.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
 gi|228930729|ref|ZP_04093707.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|74493783|gb|EAO56884.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228828976|gb|EEM74635.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228855244|gb|EEM99808.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
          Length = 745

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 139/682 (20%), Positives = 260/682 (38%), Gaps = 65/682 (9%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             L   Y+ YA   +  RA+ D+RDG KPV R  ++ M +          KS ++   V+
Sbjct: 46  QYLVRGYIDYAREVLTNRALEDIRDGLKPVQRYALYWMFKEK---AKDMIKSEQVGAGVL 102

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRY-PLISGQGNFG---NIDGDSAAAYRYTEARMTQV 139
            K HPH   S Y+SL ++ +     Y PL+ G+G  G   +    S AA RYT  +  + 
Sbjct: 103 -KYHPHNADSAYESLTKMVESNGTFYVPLLIGKGELGKKFSNG--SPAASRYTSVKFHEN 159

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +   +D   +D    +++ +  P V P+  P +L     GIAVG +T  PS   Q++
Sbjct: 160 AKEMFTAMD--GIDMVWNFDDTERVPEVLPASVPYILMKYADGIAVGFSTKSPSFLPQDV 217

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
                  I + + S   +      PDF TGG I  + + + +  + G+G F  R +  + 
Sbjct: 218 TNLVREYIRDGKCSTMIV------PDFSTGGFISYTEKELEKLMKTGKGSFMTRGKVFI- 270

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   IVVTE+P  V   +++++I +  I    P      D + +D           
Sbjct: 271 ----DGKNIVVTEVPQGVTVEKIMKEIEKAEIQGITPN--GYSDLTGKDGCYFEITCRAK 324

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
                ++  ++  + ++ +F  N+  +   ++  +  + GI+  W+  RR+VL R++   
Sbjct: 325 NRVQEVLMELYTKTSLQKKFNSNLLAVESKKL-VITGVWGIIDRWVKWRRKVLTRQTRLD 383

Query: 380 MQAIDRRVEILKGLLIAYLNI---DEIIAII--RNEDKPKPVMVSRFSLTENQVDAILNL 434
           +  +    +  KG +         DEI+ +   ++++     +        +  + I+  
Sbjct: 384 LAKLVESAKYTKGFIDLLAIEGARDEIVELTTKKSDNDAIKRIQEYIQCERDVAEWIIKR 443

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL   R   +Y  +     +          +   ++    I   I E  + F        
Sbjct: 444 RLNQFRNDNKYINQYANYQIE---------IAKLEKYLENIDTLILEDMDRFDLLVSKKH 494

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            R T       +  T+++  IE          +               LH K      I 
Sbjct: 495 ERRTEITNKVYEVETVKEDEIEIPVSECYYQIKDGFLR---------KLHVKPTSGEGII 545

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG----EAIQLLIDLNHNQDIVTAFVYDS 610
              +T   I+ LS++G+ + +   ++    G+           +    +  ++ A V D 
Sbjct: 546 FEGYTNSTIIALSSEGEIFRIYGNDINYLTGNDIGTYIPTYSGLANAQHVQLIWATVCDE 605

Query: 611 TCKLLVVSSKGNAFIVEESEI------IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
              +L     G    ++ +E           R G +       +K+  V +   D V VV
Sbjct: 606 KKYVLTY-EDGFVGFLDTAEFLVGAIKSKYLRNGISAHA----DKLTDVREYQEDSVIVV 660

Query: 665 GENRKLLIF-SIDQIPEMSRGK 685
             + KL     +D I   SR  
Sbjct: 661 ETHDKLYACAHLDSIKMKSRTA 682


>gi|289619683|emb|CBI53966.1| putative TOP2 protein [Sordaria macrospora]
          Length = 1915

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 78/404 (19%), Positives = 151/404 (37%), Gaps = 25/404 (6%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ + + +S    +    + ++++    R+IP + DG KP  R+++    +  L 
Sbjct: 780  EPGTYLDHSTEKISYTDFVNRELILFSMADNI-RSIPSMVDGLKPGQRKVLFGCFKQNLI 838

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                 +K   + G V      H HG+QS+  ++V LAQ F        +   GNFG+   
Sbjct: 839  HD---QKVVELAGYVSKEAAYH-HGEQSLQQTIVGLAQNFVGSNNINCLEPSGNFGSRLS 894

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++ +A  I   +DE  ++F+   + +  EP V+    P +L NG  
Sbjct: 895  GGSDAASARYIHTRLSPLARKIFHPLDEPNLEFQFD-DGKLIEPKVYAPILPMVLVNGAD 953

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP+++  +I E     +        +   +                +   E
Sbjct: 954  GIGTGWSTSIPNYHPLDIVENLKRRMGRDSSGDGEEKPFEPM------TPWFRGWKGTPE 1007

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII-AKRIPLLED 300
                G   F+      V    +    + VTE+P ++       K+ E+I   K    ++D
Sbjct: 1008 P--DGPNKFKFNGIVEVNP--QNPNEVDVTELPIRMWTDDFKSKLEEIIRGDKGPSWIKD 1063

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLD 358
             ++ +       +           L + +     +         V    R  + +     
Sbjct: 1064 YKEYNDHQTVHFIIALEEKQMSSALRDGLIEKFKLTKTVATTNLVAFDTRGKIYKYENPQ 1123

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
             I++E+  +R  +   R    ++        L+        I E
Sbjct: 1124 EIMEEYYHYRLNLYGERKKHWLKVYHADYRKLQNQYRFISEIIE 1167


>gi|282889677|ref|ZP_06298216.1| hypothetical protein pah_c004o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500251|gb|EFB42531.1| hypothetical protein pah_c004o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 593

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 122/562 (21%), Positives = 218/562 (38%), Gaps = 65/562 (11%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAA 127
                K A + G+ +   HPHGD  + ++LV +A     R  L+  QGNFGNI  GD AA
Sbjct: 3   DGKLHKVANVAGQTMA-YHPHGDAPITEALVNMA----NRGYLLDQQGNFGNIFTGDPAA 57

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RY E R+  +A+  L   + D   +  +Y+    EP+V P+K P LL  G +GIAVGM
Sbjct: 58  AARYIETRLAALAKETL--FNPDLTAYAPSYDGRHQEPIVLPAKIPLLLMQGATGIAVGM 115

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +TSI  HN +E+ EA +A        I +  E+ + PDFPTGGI+  S       Y  GR
Sbjct: 116 STSILPHNFEELLEAEIA--------ILEDREFSVFPDFPTGGIMDASD------YNQGR 161

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA+  V +       +V+TEI Y      LI  I E     +I +  D  ++   
Sbjct: 162 GKVKLRAKIEVRDPKT----LVITEICYGTTTESLIRSIDEAAKRGKIKI--DAINDYTA 215

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   +     R    + L+++++  ++ E        V+    +P    +D ILK     
Sbjct: 216 EKVEIEIKLPRGQYAEELIQALYAYTECEVAIHSQ-IVVIKDDLPWETDVDSILKLHAEK 274

Query: 368 RREVLFRRSSFRMQAIDRRVE--ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            +E L             ++    L+ + I       I      E   + +        +
Sbjct: 275 LQEYLRIELELERDRFKEKIFAKTLEQIFIENRLYKNIENATSYEKVHEIIEKGLMPFHD 334

Query: 426 N--------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                      + +L++ +R + K +  +  SE+  +  +  +++  L + K+       
Sbjct: 335 QLTRIPHYDDREGLLSIPIRRISKFDLEKNLSEIHAIDKQLIEVEKHLKNVKKFTIH--- 391

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
            +R +   ++K        T+  E++    AT +  +        + +      S     
Sbjct: 392 YLRGLLTKYAKDYPRRTEITSIEEINMRAIATRKMTVGFDPSTGFLGTKVTGKLS----- 446

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
                                  D++L+L  DG    +        +   + +   +   
Sbjct: 447 -----------------FECTNFDKVLILFDDGTYTVINIPEKQYLQTDHKKVV-YVGCA 488

Query: 598 HNQDIVTAFVYDSTCKLLVVSS 619
             + +++  V D          
Sbjct: 489 DKKTVISVLVKDPKSHFCFAKR 510


>gi|60678990|gb|AAX33776.1| topoisomerase IV subunit A [Mycoplasma synoviae]
          Length = 136

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 68/136 (50%), Positives = 93/136 (68%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +     +GLDF   FKKSARIVG+VIGK HPHGD SVYD+++ LAQ +    PL+S  GN
Sbjct: 1   LLQCGMLGLDFDKKFKKSARIVGDVIGKYHPHGDTSVYDAMINLAQWWKMNIPLLSMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
            G+ID D  AA RYTE ++ ++A  I+  + +  V F   +++ ++EP+V PS FPNLL 
Sbjct: 61  IGSIDDDKQAAMRYTEVKLAKIANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLV 120

Query: 178 NGTSGIAVGMATSIPS 193
           NG+ GIA+GMAT +P 
Sbjct: 121 NGSRGIAIGMATEMPP 136


>gi|164425154|ref|XP_962372.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
 gi|157070812|gb|EAA33136.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
          Length = 1909

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 77/404 (19%), Positives = 151/404 (37%), Gaps = 25/404 (6%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ + + +S    +    + ++++    R+IP + DG KP  R+++    +  L 
Sbjct: 767  EPGTYLDHSTEKISYTDFVNRELILFSMADNI-RSIPSMVDGLKPGQRKVLFGCFKQNLI 825

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                 +K   + G V      H HG+QS+  +++ LAQ F        +   GNFG+   
Sbjct: 826  HD---QKVVELAGYVSKEAAYH-HGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLS 881

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++ +A  I   +DE  ++F+   + +  EP V+    P +L NG  
Sbjct: 882  GGSDAASARYIHTRLSPLARKIFHPLDEPNLEFQFD-DGKLIEPKVYAPIIPMVLVNGAD 940

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP+++  +I E     +        +   +                +   E
Sbjct: 941  GIGTGWSTSIPNYHPLDIVENLKRRMGRDSSGDGEEKPFEPM------TPWFRGWKGTPE 994

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII-AKRIPLLED 300
                G   F+      V    +    + VTE+P ++       K+ E+I   K    ++D
Sbjct: 995  P--DGPNRFKFNGIVEVNP--QNPNEVDVTELPIRMWTDDFKSKLEEIIRGDKSPSWIKD 1050

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLD 358
             ++ +       +           L + +     +         V    R  + +     
Sbjct: 1051 YKEYNDHQTVHFIIALEEKHMSSALRDGLIEKFKLTKTVATTNLVAFDTRGKIHKYENPQ 1110

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
             I++E+  +R  +   R    ++        L+        I E
Sbjct: 1111 EIMEEYYHYRLNLYGERKKHWLKVYHADYRKLQNQYRFISEIIE 1154


>gi|321268232|gb|ADW78924.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268244|gb|ADW78930.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 110

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 58/110 (52%), Positives = 86/110 (78%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++ M ++G+   +A KKSARIVGEV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           GNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 110


>gi|208972194|gb|ACI32675.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 117

 Score =  216 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 64/115 (55%), Positives = 87/115 (75%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ G+GNFG+IDGD
Sbjct: 3   GNDWNKAYKKSARVVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGRGNFGSIDGD 62

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           SAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG
Sbjct: 63  SAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNG 117


>gi|330864104|emb|CBX74176.1| hypothetical protein YEW_JA39640 [Yersinia enterocolitica W22703]
          Length = 387

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 92/289 (31%), Gaps = 8/289 (2%)

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I  E+  +KE+++ +        T               +       V         
Sbjct: 1   MEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYE 60

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEA 589
           + +      SA   KE D +   L A+T D IL  S+ G+ Y +    L        G  
Sbjct: 61  AQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRP 120

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  L+ L  N+ I        Y+    + + ++ G       +E       G   + ++ 
Sbjct: 121 IVNLLPLEPNERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNE 180

Query: 647 EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++  V    G + V +     K++ F   Q+  M R   GVR  +         +   
Sbjct: 181 GDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSMGRTATGVRGINLNGDDRVISLIIP 240

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +G   +      Y +           R   G +  K   R+GK + +
Sbjct: 241 RGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGA 288


>gi|45550208|gb|AAS67882.1| GyrA [Salmonella enterica subsp. enterica serovar Hadar]
          Length = 104

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 58/104 (55%), Positives = 83/104 (79%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 104


>gi|2191121|gb|AAB61011.1| DNA gyrase A [Staphylococcus epidermidis]
          Length = 132

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/129 (53%), Positives = 101/129 (78%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D S+Y+++VR+AQ F  RYPL++GQGNFG++DGD AAA RYTEAR+T++   +L+ +++D
Sbjct: 1   DSSIYEAMVRMAQDFSYRYPLVNGQGNFGSMDGDGAAAMRYTEARLTKITLELLRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ +  L+L  NP
Sbjct: 61  TIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLSLSKNP 120

Query: 211 EISIEKLLE 219
           +I+I +L+E
Sbjct: 121 DITINELME 129


>gi|322707413|gb|EFY98991.1| DNA topoisomerase 2 [Metarhizium anisopliae ARSEF 23]
          Length = 1647

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 160/397 (40%), Gaps = 21/397 (5%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K ++    + +  + ++++    R+IP + DG KP  R++++A  +  L  
Sbjct: 776  PGTFLDHSTKEITYTDFVSKELILFSMADNL-RSIPSVIDGLKPGQRKVLYACFKRNLIK 834

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E     H HG+ S+  +++ LAQ F       ++   GNFG+    G 
Sbjct: 835  DKKVVELAGYVSEHTA-YH-HGEASLQQTIIGLAQNFVGSNNINILEPSGNFGSRLAGGS 892

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RYT  R+   A+ I   +DE  +  +   + +  EP V+    P +L NG  GI 
Sbjct: 893  DAASPRYTFTRLAPFAKKIFSPLDEACLKHQY-EDGKRIEPEVYSPILPMVLVNGADGIG 951

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IP+++  +I +     +   +    +   +       T        +       
Sbjct: 952  TGWSTTIPNYHPADIVKNLKRRMGRLDEDGAEEKPF------ETMTPWFRGWKG--SPEA 1003

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE-LIIAKRIPLLEDIRD 303
             G   ++        +  +    I++TE+P ++       K+ + +        ++D ++
Sbjct: 1004 AGPDRYKFNGIAS--QNDQNPNEIIITELPIRMWTDDFKAKLEKVISGNDGPTWIKDYKE 1061

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGIL 361
             +           +    P +L E +     +  +   +  V    R  + +   ++ IL
Sbjct: 1062 FNDHKTVHFEIMVDEKHLPKILEEGLLERFKLTKQVATSNLVAFDTRGQIRKYEKVEDIL 1121

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
            +E+  HR ++   R  + +Q  D  +E LK       
Sbjct: 1122 EEYYVHRLQMYHDRKQYWLQVYDNDLEKLKNQYRFIK 1158


>gi|313635489|gb|EFS01727.1| DNA gyrase, A subunit [Listeria seeligeri FSL N1-067]
          Length = 112

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/110 (50%), Positives = 78/110 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGS 112


>gi|18034055|gb|AAL57340.1|AF397169_1 GyrA [Proteus mirabilis]
          Length = 98

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/98 (60%), Positives = 78/98 (79%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY
Sbjct: 1   LKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRY 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
            L+ GQGNFG++DGDSAAA RYTE RM ++A  +L  +
Sbjct: 61  MLVDGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLADL 98


>gi|121822824|gb|ABM65609.1| DNA topoisomerase IV subunit [Shigella flexneri]
          Length = 119

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/119 (49%), Positives = 84/119 (70%), Gaps = 1/119 (0%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP 
Sbjct: 61  RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 119


>gi|71030782|ref|XP_765033.1| DNA topoisomerase II [Theileria parva strain Muguga]
 gi|68351989|gb|EAN32750.1| DNA topoisomerase II, putative [Theileria parva]
          Length = 1378

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/383 (19%), Positives = 154/383 (40%), Gaps = 36/383 (9%)

Query: 10   NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             T V+ ++K +     + +  + +++    ER+IP + DGFKP  R+++    +  L   
Sbjct: 651  GTTVDHSIKKLRYSDFINKELIQFSIYD-TERSIPSVIDGFKPGQRKVLFGCFKRNLKNE 709

Query: 70   AAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                K A++ G +      H HG+ S+  ++V +AQ F       L+   G FG+    G
Sbjct: 710  ---CKVAQLTGYIAEHSAYH-HGENSLQQTIVNMAQDFVGSNNINLLLPCGQFGSRKEGG 765

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY   +++ +   I    D+  +D++   + +  EP  +    P +L NG  GI
Sbjct: 766  KDAAAARYIFTKLSPLTRYIFLQEDDPILDYQ-NDDGQIIEPYYYLPIIPMVLVNGAEGI 824

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IPS+N  ++ +  +  +DN +++                 +I   R       
Sbjct: 825  GTGFSTYIPSYNPIDVIDNIVNFLDNKDMND----------------MIPWYRNFKGTVT 868

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
            R  + G+ +  ++   E+      +V+TE+P     +   E +  ++    +    + D 
Sbjct: 869  RNTKLGYDITGKY---ELNHSLNQLVITELPVNRWINDYREFLNSIMVTNKEDEGYITDY 925

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
             D S+ +          +     + + I  +  ++T  P +  +L      ++   +G +
Sbjct: 926  GDYSSNEDIK--IKIKLNDSGPDITDDIEKVFKLKTTIPTSNMILFD-CNKRIKKYNGAI 982

Query: 362  KEWLAHRREVLFRRSSFRMQAID 384
                      +   S  R   I 
Sbjct: 983  DILKDFITTRVKYYSKRREYMIK 1005


>gi|45738080|gb|AAS75837.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Kentucky]
          Length = 104

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 57/104 (54%), Positives = 82/104 (78%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 104


>gi|91093519|gb|ABE11581.1| ParC [Escherichia coli]
 gi|91093593|gb|ABE11592.1| ParC [Escherichia coli]
          Length = 108

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 59/108 (54%), Positives = 81/108 (75%), Gaps = 1/108 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDED 150
           PF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L  + + 
Sbjct: 61  PFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQG 108


>gi|49354925|gb|AAT65185.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 101

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 58/101 (57%), Positives = 78/101 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PN
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 101


>gi|297831176|ref|XP_002883470.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297329310|gb|EFH59729.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1432

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 153/400 (38%), Gaps = 34/400 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T +++    V+    + +  + ++++   +R+IP + DG KP  R+I+    +  +  
Sbjct: 669  PGTHLDQREPKVTYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFTAFKKIVV- 726

Query: 69   GAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++VG V  +   H HG+QS+  +++ +AQ +       L+   G FG     
Sbjct: 727  --KEMKVAQLVGYVSSMSAYH-HGEQSLASAIIGMAQDYVGSNNINLLQPNGQFGTRNSG 783

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  AA+ RY    ++ V  ++    D   +D+    + +  EP  +    P +L NG+ G
Sbjct: 784  GKDAASARYIFTILSPVTRILFPKDDHILLDY-LNEDGQSIEPTWYMPIIPTVLVNGSEG 842

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE- 241
            I  G +T IP++N +EI       ++   +                        +  +E 
Sbjct: 843  IGTGWSTFIPNYNPREIVANVRCRLNGESMVPMDP--------------WYRGFKGTIEK 888

Query: 242  -SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
             + + G   + +   +   +       I +TE+P +       + +  L      P  +D
Sbjct: 889  TASKEGGCTYTITGLYEEVDD----TTIRITELPIRRWNDDYKQFLQSLKTDNGAPFFQD 944

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLD 358
            ++  + +         +         E       + T    +   L   +  + +    +
Sbjct: 945  VKAYNDDKSVDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDRKGVIKKYATPE 1004

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             IL+E+   R E   +R    ++ ++  +  L+  +   L
Sbjct: 1005 QILEEFFELRLEYYEKRKETMLKNLEIELLKLENKVRFIL 1044


>gi|155371498|ref|YP_001427032.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
            virus 1]
 gi|155124818|gb|ABT16685.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
            virus 1]
          Length = 1058

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 90/459 (19%), Positives = 181/459 (39%), Gaps = 45/459 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                 +++ +  + +   + +  + ++     ER+IP + DG KP  R+I+ +  +  L 
Sbjct: 614  EPGNQLDQKLTKIPVEDFINKDLILFSRYD-VERSIPSVVDGLKPSQRKILFSALKRNLV 672

Query: 68   FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A+  G        H HG+ S+  ++V +AQ +       L+  +G FG+   
Sbjct: 673  QE---IKVAQFAGYTSENAGYH-HGEASLQGAIVGMAQDYVGSNNINLLLPRGQFGSRLH 728

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   +++     I    DE  +++ +  + +  EP  +    P LL NG+S
Sbjct: 729  GGKDSASARYIFTQLSPNTRDIFHKADERLLNYLED-DGDRIEPEYYVPTIPFLLVNGSS 787

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IP++N ++I +    LI+N  +              P        +  I E
Sbjct: 788  GIGTGFSTNIPAYNPKDIVDNVKRLINNETM-------------LPMTPWYRGFKGDIKE 834

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            +     G F     + +         + V+E+P     +   E +  LI  K +    + 
Sbjct: 835  T---SPGVFTCSGVYDI-----KGKTVTVSELPVGTWTNDYKEHLETLIEKKIVADFRER 886

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
              E      I       +LDP++L     + +     F         G++ +      I+
Sbjct: 887  HTELNVHFEIDFV---GTLDPNILKLESTIRTTNMHAFDP------SGKIKKYDSPLEII 937

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRR---VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             +W   R+E   +R    ++ +  R    +     + +  +   +I     ED  K +  
Sbjct: 938  ADWFTTRKEFYVKRKEDLLKDLKARVLVAQNKSRFITSVNDGTLVITRRAEEDVIKDLGK 997

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
             +F   +   D +L +++ SL K    ++++E   L  E
Sbjct: 998  LKFYKVDKSFDYLLGMKISSLTKERAEKLQAEAAALEKE 1036


>gi|61654895|gb|AAX48942.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654897|gb|AAX48943.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654899|gb|AAX48944.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654907|gb|AAX48948.1| topoisomerase IV subunit [Shigella dysenteriae]
          Length = 121

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 58/121 (47%), Positives = 85/121 (70%), Gaps = 1/121 (0%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  
Sbjct: 1   SELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 122 DG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           D   S AA RYTE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT
Sbjct: 61  DDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGT 120

Query: 181 S 181
           +
Sbjct: 121 T 121


>gi|56550031|gb|AAS75324.2| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 112

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 54/112 (48%), Positives = 79/112 (70%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSA+ V + +G  HPHGD ++YD++VR+AQP+  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSAKPVSDTMGNYHPHGDSAIYDTMVRMAQPWSMRYPLVDGQGNFGSRGDDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTEAR+T +A  +++ + E+ VDF+  Y+   +EPV+ PS+ P LL NG+ G
Sbjct: 61  YTEARLTPLAMEMVRDIRENTVDFQPNYDGRTTEPVILPSRVPQLLMNGSGG 112


>gi|149234581|ref|XP_001523170.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146453279|gb|EDK47535.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1492

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 75/407 (18%), Positives = 147/407 (36%), Gaps = 37/407 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                ++  +  + +   + +  + +++S    R+IP + DG KP  R+I++   +  L  
Sbjct: 738  PGDNLDPEMNEIPISDFINKELILFSMSDNV-RSIPSMLDGLKPGQRKILYGCFKRKLKN 796

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V +V    H HG+QS+  +++ +AQ F       L+   G FG+    G 
Sbjct: 797  EIKVAQLAAYVADVSS-YH-HGEQSLVQTIIAMAQNFVGSNNINLLKPNGAFGSRATGGK 854

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANGTS 181
             AAA RY    + ++   I    D    D    Y   +E   EP  +    P +L NG  
Sbjct: 855  DAAAARYIFTELNEITRTIFNEAD----DPLLNYLQDDESTVEPQWYLPVLPMILVNGAD 910

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IPS+N  +I      L+      +E++  +  G                 +
Sbjct: 911  GIGTGWSTNIPSYNPLDIVANLRRLMRG--EPMEEMNPWYKG---------WYG-----D 954

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK-IAELIIAKRIPLLED 300
              ++G   F++  R    +       I ++E+P +   + + E  +A L   K +  ++D
Sbjct: 955  IEKVGPQKFKISGRIEQIDDNT----IEISEVPVKTWTNTVKEFLLAGLGNEKTVQWIKD 1010

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            +  E        +   + +     L   +     + +   L   V       ++     +
Sbjct: 1011 ME-EQHTTSIRFVVKLSDAEMAKALSVGLLEKFKLVSTISLANMVAFDPHG-RIKKYLDV 1068

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            L          L      +   ++        +      I  II   
Sbjct: 1069 LDIVKDFYFVRLEYYEKRKNHMLEILQHKHSMISEQARFIKMIIDKQ 1115


>gi|16754840|emb|CAD10663.1| DNA gyrase [Salmonella typhi]
          Length = 104

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 85/104 (81%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 104


>gi|303388894|ref|XP_003072680.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
 gi|303301822|gb|ADM11320.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
          Length = 1141

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 88/462 (19%), Positives = 171/462 (37%), Gaps = 51/462 (11%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++++   +S+   + +  + ++++    R+IP L DG KP  R+++ +  +  L 
Sbjct: 631  EPGTFLDQSQPQISISDFVNKELILFSMADNI-RSIPSLVDGLKPGQRKVMFSCFKRNLR 689

Query: 68   FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++VG V  +   H HG+QS+  ++V LAQ F       L+   G FG+   
Sbjct: 690  SE---IKVAQLVGYVSEQSAYH-HGEQSLCSTIVNLAQDFVGSNNINLLLPIGQFGSRLQ 745

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY    ++ +  LI    D+  + +    +    EP  +    P +L NG  
Sbjct: 746  GGKDAASPRYIFTSLSPLTRLIFNENDDAILSY-LNDDNLSIEPEFYVPIIPMVLVNGAE 804

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP+ N  ++ E    LI   +                           ++ 
Sbjct: 805  GIGTGWSTSIPNFNPVDVVENIRRLIRGEDPV------------------------EMIP 840

Query: 242  SYRLGRGGFRVR--ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             YR  RG        ++ V  +  G   + ++E+P         E +  L+ A  +   +
Sbjct: 841  YYRNFRGTIEKVGEGKYQVSGIYEGDMDLEISELPVGTWTLNYKEFLESLVQAGVVKDFK 900

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            +   E           K  S    L      +           +       + +      
Sbjct: 901  EYHTE-----------KTVSFSVKLSKSISNLKLSTTITINNMVCFDENLGIKKYSTPQE 949

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID--EIIAIIRNEDKPKPVM 417
            ILKE+   R      R    ++ +   +  L+  +     +   E++   R + +    +
Sbjct: 950  ILKEFYDVRLRYYSIRKENMLKVMKEELVKLENKVRFIKEVSTGELVISRRRKGEVIFDL 1009

Query: 418  VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
             SR     +  + +L++ + SL      ++ +E    L E  
Sbjct: 1010 ESRRYARVDDYEYLLSMSILSLTVERIEKLNNEHAKKLEEYN 1051


>gi|224086458|ref|XP_002193920.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Taeniopygia guttata]
          Length = 2085

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 159/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 1257 LTYNDFINKELVLFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 1312

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ ++  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 1313 GSVAEMSSYH-HGEAALMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 1371

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   +D++ + F    + +  EP  +    P +L NG  GI  G A  IP+
Sbjct: 1372 TMLSPLARLVFPPMDDNILRFLYD-DNQRVEPEWYMPIIPMVLVNGAEGIGTGWACKIPN 1430

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +++E+      L+D  E            P  P+      + + +      G   + + 
Sbjct: 1431 FDIREVVNNIRRLMDGEEPL----------PMLPSYKNFKGTIDEL------GPNQYVIS 1474

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                + +       I +TE+P +       E++ E +     K  PL+ D ++   +   
Sbjct: 1475 GEVSILDS----TTIEITELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTV 1530

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +      ILKE+   R
Sbjct: 1531 RFVVKMTEDKLAEAEAVGLHKVFKLQTSLTCNSMVLFDHVGFLKKYDSPQDILKEFFELR 1590

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                  R  + +     +      +   I      +I+   + + +   V++ R   ++ 
Sbjct: 1591 LRYYNLRKEWLIGMLGAESAKLSNQARFILEKIDGKIVIENKPKKELIQVLIQRGYESDP 1650

Query: 427  QVDA 430
                
Sbjct: 1651 VKAW 1654


>gi|18389162|gb|AAL67640.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389164|gb|AAL67641.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389166|gb|AAL67642.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389168|gb|AAL67643.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389170|gb|AAL67644.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389172|gb|AAL67645.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389174|gb|AAL67646.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389176|gb|AAL67647.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389178|gb|AAL67648.1| DNA topoisomerase IV subunit [Escherichia coli]
          Length = 120

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 84/120 (70%), Gaps = 1/120 (0%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D
Sbjct: 1   ELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 60

Query: 123 G-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
              S AA RYTE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+
Sbjct: 61  DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTT 120


>gi|75761793|ref|ZP_00741728.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490726|gb|EAO54007.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 362

 Score =  213 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 107/301 (35%), Gaps = 23/301 (7%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
             ++    I  E+ EVKE F+      +RRT         +    + +I ++ I + +++
Sbjct: 13  DEEKVLEIIREELTEVKERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTH 65

Query: 527 RGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+ L + +          +  +   + D ++  L   T D IL  +  GK Y     
Sbjct: 66  NGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGY 125

Query: 579 NLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +       +   I  L+ ++  + I        +     L   + +G +     S    
Sbjct: 126 EIPEYSRTAKGLPIINLLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFAN 185

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
               G   + +  E+++  V   +GD  + V   N  L+ F+   +  M R   GV+  +
Sbjct: 186 IRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAIT 245

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      +   + E    +      Y +        L  RGG G        ++GK +
Sbjct: 246 LGEEDQVVGMEI-VEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLV 304

Query: 752 S 752
           +
Sbjct: 305 A 305



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 65/170 (38%), Gaps = 8/170 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 185 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 243

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 244 ITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNG-K 302

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D   
Sbjct: 303 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQD 352


>gi|46946648|gb|AAT06572.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 62/114 (54%), Positives = 87/114 (76%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +A
Sbjct: 1   NWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           AA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 61  AAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 114


>gi|16754842|emb|CAD10664.1| DNA gyrase [Salmonella typhi]
          Length = 104

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 85/104 (81%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 104


>gi|124108785|gb|ABM90969.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 98

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 82/98 (83%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  +
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGL 98


>gi|225555588|gb|EEH03879.1| DNA topoisomerase II [Ajellomyces capsulatus G186AR]
          Length = 1716

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/402 (18%), Positives = 160/402 (39%), Gaps = 35/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++     ++    + +  + ++++    R+IP + DG KP  R++++   +  + 
Sbjct: 683  KPGTFLDHTTDEITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFKRNVK 741

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A + G V+G      HG+QS+  +++ LAQ F        +   GNFG+   
Sbjct: 742  KD---VKVAELSGYVLGMTAYQ-HGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQ 797

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++  A  I    DE  + +    + +  EP ++    P +L NG  
Sbjct: 798  GGSDAASPRYIYTRLSPFARRIFHEADEPLLTYNVD-DGQVIEPEIYFPVVPMILINGAE 856

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +EI      L+    +   +                        E
Sbjct: 857  GIGTGWSTSIPNYNPEEIVANLKRLMAGEPLVPMEP--------------WFRGFTG--E 900

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
               +G   ++   R        G   + +TE+P +       +++ E+I A+++P   +D
Sbjct: 901  VVSMGGERYKFSGRIS----QIGDNEVEITELPIRSWTQDFKDRLEEIIKAEKVPSFIKD 956

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       + E +     +      +  V      R+ +   ++
Sbjct: 957  YKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFKLTKTIATSNLVAFDSEGRITKYESVE 1016

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             IL+E+ + R ++  +R   ++  + + +E +         I
Sbjct: 1017 EILREFFSVRLKLYEKRKQHQLSQMQKDLEKMTNQARFVQMI 1058


>gi|301166553|emb|CBW26129.1| putative DNA gyrase subunit A [Bacteriovorax marinus SJ]
          Length = 480

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 105/473 (22%), Positives = 198/473 (41%), Gaps = 35/473 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            +++++ L   + E Y  Y + T+ +RAIP L+DG KP  RRI+  + +   +      K
Sbjct: 7   HSMESIPLEDIVREEYRTYQIYTLMDRAIPYLKDGLKPGQRRILFTLWK---NQSKGLMK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQP--FVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            +   G V+  LHPHG  SV  ++V +AQ   F   YPLI  +G FG     S AA RY 
Sbjct: 64  VSSATGLVL-TLHPHGPASVESAIVNMAQDYTFSNNYPLIDKKGYFGERMETSPAASRYI 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++ ++++++L   D D V+    Y+E+  EPV    K P +L NG  GI  G ++ IP
Sbjct: 123 ECKLGKISQILLFD-DMDQVEMVPNYDEKVMEPVNLLPKLPLMLLNGAEGIGTGFSSVIP 181

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           S + +E+  + ++ +++ +   +KL  +  G + P            +E  + GR  F +
Sbjct: 182 SFSHKEVINSMISFLESGKA--KKLKPFSNGFNLP------------IERDQRGRLIFNM 227

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
                          I + E+P      ++ + + + I A  I    D       DVRI 
Sbjct: 228 G-------FEEVDGKIYINELPRGYDAQKIYKYLTKYIEADFIKDFVDSTV--DNDVRIE 278

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K  +      +E     +  +     N  ++S   V      + I++ +   R  V+
Sbjct: 279 LIFKRGAEKSLEEVEKEMGTASTQV---PNYTLISERGVRIFDKPEEIIEIFSGQRLAVV 335

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR   R Q +  +++    ++      +    +       K  +           D + 
Sbjct: 336 KRRYELRCQGLKDKIQQNNEIIKFIKKKE--YEVATKSKNRKSFVEYLTKKKFVYSDYLA 393

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           ++ +  + K E  +    + +      +   +  S K    ++  E+++V + 
Sbjct: 394 DMPIYRMTKEEVAKRALMVKDDTKLLAEYTKIAKSDKLIKKKLIEELKDVGDQ 446


>gi|2191123|gb|AAB61012.1| DNA gyrase A [Staphylococcus haemolyticus]
          Length = 132

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/129 (54%), Positives = 97/129 (75%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D S+YD++VR+ Q F  RYPL+ GQGNFG++DGD AAA RYTEA+MT++   +L+ +++D
Sbjct: 1   DSSIYDAMVRMEQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKITLELLRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP HN+ E+    L L  NP
Sbjct: 61  TIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNLTEVINGVLHLSKNP 120

Query: 211 EISIEKLLE 219
           +++I +L+E
Sbjct: 121 DVTIAELME 129


>gi|167957029|ref|ZP_02544103.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7c]
          Length = 417

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 136/348 (39%), Gaps = 24/348 (6%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q  AIL ++LR L  LE   I++EL  LLA  EK+  +L   ++  N I  E+ 
Sbjct: 14  FGLSEIQAKAILAMQLRRLTGLEREAIENELRELLALIEKLKGILADEQEILNIIKNELI 73

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
           E+KE +       +RR+              + +I +E   V++++  +I+         
Sbjct: 74  EMKEKYGD-----QRRSKMINHELG--KFSDEELIPEEDSVVLLTSENYIKRTLASDYRK 126

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AI 590
                     +  KE D ++  + A T D +L  +  G+ + L A  + +     +  A 
Sbjct: 127 QNRGGKGKRGMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRLKAYEVPAASLQAKGVAA 186

Query: 591 QLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
             L+ L   + I     ++        L + + KG        +       G   +K+  
Sbjct: 187 VNLLQLQPEEKITAIIKFEKDAKDDGYLFMATVKGTIKKTPVKDYANIRTNGLIAIKLDD 246

Query: 647 EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            ++++ + + +G D + +     + + F+      M R  +GVR    +       +   
Sbjct: 247 GDELRWIKRSSGNDDILISTSAGQAIRFNEKDARSMGRAARGVRGVRLRPNDSVVGMDIA 306

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  T +  +   Y ++         KRGGVG        ++G  +S
Sbjct: 307 -NDDRTLLVISENGYGKATKISNFPSHKRGGVGIKAAVVTAKTGPIIS 353



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 7/176 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+   +GD L+    +   D IL+ ++ G+A      +  S       ++  
Sbjct: 233 NIRTNGLIAIKLDDGDELRWIKRSSGNDDILISTSAGQAIRFNEKDARSMGRAARGVRG- 291

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           + L  N  +V   + +    LLV+S  G     + S   ++ R G   K  +  +    +
Sbjct: 292 VRLRPNDSVVGMDIANDDRTLLVISENGYGKATKISNFPSHKRGGVGIKAAVVTAKTGPI 351

Query: 651 KLVVKVTGDHV--AVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICF 703
             V  +  D +   +V    + +  S+  IP + R  +GVR+    D      +  
Sbjct: 352 ISVKTIQQDDIEALLVSTQGQTIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASVGL 407


>gi|52699667|gb|AAU86937.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 98

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 59/98 (60%), Positives = 78/98 (79%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY
Sbjct: 1   LKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYETIVRLAQPFSMRY 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
            L+ GQGNFG++DGDSAAA RYTE RM ++A  +L  +
Sbjct: 61  MLVDGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLADL 98


>gi|46946646|gb|AAT06571.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/114 (55%), Positives = 87/114 (76%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++ AA+KKSARIVG+VIGK HPHGD  VYD++VR+AQ F  RY LI GQGNFG++DG +A
Sbjct: 1   NWNAAYKKSARIVGDVIGKYHPHGDFPVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           AA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 61  AAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 114


>gi|49354928|gb|AAT65186.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 101

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/101 (57%), Positives = 78/101 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PN
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 101


>gi|325089309|gb|EGC42619.1| DNA topoisomerase II [Ajellomyces capsulatus H88]
          Length = 1712

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/402 (18%), Positives = 160/402 (39%), Gaps = 35/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++     ++    + +  + ++++    R+IP + DG KP  R++++   +  + 
Sbjct: 683  KPGTFLDHTTDEITYTDFINKELILFSMADNI-RSIPSVIDGLKPGQRKVLYTCFKRNVK 741

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A + G V+G      HG+QS+  +++ LAQ F        +   GNFG+   
Sbjct: 742  KD---VKVAELSGYVLGMTAYQ-HGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQ 797

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++  A  I    DE  + +    + +  EP ++    P +L NG  
Sbjct: 798  GGSDAASPRYIYTRLSPFARRIFHEADEPLLTYNVD-DGQVIEPEIYFPVVPMILINGAE 856

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +EI      L+    +   +                        E
Sbjct: 857  GIGTGWSTSIPNYNPEEIVANLKRLMAGEPLVPMEP--------------WFRGFTG--E 900

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
               +G   ++   R        G   + +TE+P +       +++ E+I A+++P   +D
Sbjct: 901  VVSMGGERYKFSGRIS----QIGDNEVEITELPIRSWTQDFKDRLEEIIKAEKVPSFIKD 956

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       + E +     +      +  V      R+ +   ++
Sbjct: 957  YKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFKLTKTIATSNLVAFDSEGRITKYESVE 1016

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             IL+E+ + R ++  +R   ++  + + +E +         I
Sbjct: 1017 EILREFFSVRLKLYEKRKQHQLSQMQKDLEKMTNQARFVQMI 1058


>gi|91093517|gb|ABE11580.1| ParC [Escherichia coli]
 gi|91093521|gb|ABE11582.1| ParC [Escherichia coli]
 gi|91093523|gb|ABE11583.1| ParC [Escherichia coli]
 gi|91093527|gb|ABE11585.1| ParC [Escherichia coli]
 gi|91093531|gb|ABE11587.1| ParC [Escherichia coli]
 gi|91093551|gb|ABE11590.1| ParC [Escherichia coli]
 gi|91093585|gb|ABE11591.1| ParC [Escherichia coli]
 gi|91093595|gb|ABE11593.1| ParC [Escherichia coli]
          Length = 108

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 59/108 (54%), Positives = 82/108 (75%), Gaps = 1/108 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD++ Y+++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDED 150
           PF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L  + + 
Sbjct: 61  PFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQG 108


>gi|46946650|gb|AAT06573.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/114 (54%), Positives = 87/114 (76%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +A
Sbjct: 1   NWNAAYKKSARIVGDVIGKYHPHGDFAVYATIVRMAQNFAMRYVLIDGQGNFGSVDGLAA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           AA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 61  AAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 114


>gi|10241565|emb|CAC09565.1| DNA gyrase subunit A [Parabacteroides distasonis]
          Length = 97

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +KKSARIVG
Sbjct: 1   NIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           EV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGN
Sbjct: 61  EVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGN 97


>gi|19074112|ref|NP_584718.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
 gi|19068754|emb|CAD25222.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
          Length = 1144

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/548 (17%), Positives = 194/548 (35%), Gaps = 56/548 (10%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++++   +S+   + +  + ++++    R+IP L DG KP  R++I +  +  L  
Sbjct: 632  PGTFLDQSQTQISISDFVNKELILFSMADNI-RSIPSLVDGLKPGQRKVIFSCFKRNLRS 690

Query: 69   GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++VG V  +   H HG+QS+  ++V LAQ F       L+   G FG+    
Sbjct: 691  E---IKVAQLVGYVSEQSAYH-HGEQSLCSTIVNLAQDFVGSNNINLLLPIGQFGSRLQG 746

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  AA+ RY    ++ +  +I    D+  +++    +    EP  +    P +L NG  G
Sbjct: 747  GKDAASPRYIFTSLSPLTRMIFNENDDAILNY-LNDDNFSIEPEFYVPIIPMVLVNGAEG 805

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +TSIP+ N  ++ E    +I   +                           +V  
Sbjct: 806  IGTGWSTSIPNFNPVDVVENIRRMIRGEDPV------------------------EMVPY 841

Query: 243  YRLGRGGFRVR--ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            YR  RG        ++ V  +  G   + +TE+P         E +  L+ A      ++
Sbjct: 842  YRNFRGTIEKIGEGKFQVSGIYEGDMDLEITELPVGTWTLNYKEFLESLVQAGVARDFKE 901

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP--LD 358
               E      +      +   P   ++    ++            +     PQ +     
Sbjct: 902  YHTEKTVSFTV------KLSKPVSNLKLNSTITVNNMVCFDENLRIKKYATPQEILKEFY 955

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            G+   +   R+E + +     ++ ++ +V  +K + +  L I          D       
Sbjct: 956  GVRLRYYLIRKENMLKVMREELEKLENKVRFIKEVSMGELVISRRRKGEVIFDLESRGYA 1015

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG----KQQWNQ 474
                       +IL+L +  + +L     K   +      +    L        ++++ +
Sbjct: 1016 RADDYEYLLSMSILSLTVERIERLSNEHAKRLSEYNQLMGKTPKELWLEDLEVFEKEYLR 1075

Query: 475  I-----ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
            I          E+     K     + R+   +  +  K T +   +      +  S    
Sbjct: 1076 IAENEAREYDDELNGCIKKKGKRPKSRSGISDRQKKAKVTRKPRSLPVTE-HLTDSETSQ 1134

Query: 530  IRSLKSHS 537
             +  K ++
Sbjct: 1135 EKPWKKYN 1142


>gi|28629432|gb|AAO32079.1| topoisomerase IV [Acinetobacter genomosp. 3]
          Length = 109

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 56/109 (51%), Positives = 79/109 (72%), Gaps = 1/109 (0%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPV RRI++AMSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP
Sbjct: 1   KPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 111 LISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           LI GQGN+G+ D   S AA RYTEA+++  +EL+L  + +   +++D +
Sbjct: 61  LIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNF 109


>gi|319826938|gb|ADV74763.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 222

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 95/221 (42%), Positives = 150/221 (67%), Gaps = 1/221 (0%)

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            GDS++A RYTEARM++++  IL+ + +D +D++D Y   + EP V PS+FPNLL NG +
Sbjct: 1   TGDSSSAMRYTEARMSKISMEILRDITKDTIDYQDNYEGSEREPGVMPSRFPNLLVNGAA 60

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I +
Sbjct: 61  GIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRK 119

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+
Sbjct: 120 AYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDL 179

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           RDES      ++    R  + ++++ +++  + ++T F ++
Sbjct: 180 RDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIH 220


>gi|61654901|gb|AAX48945.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654903|gb|AAX48946.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654905|gb|AAX48947.1| topoisomerase IV subunit [Shigella dysenteriae]
          Length = 121

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 58/121 (47%), Positives = 85/121 (70%), Gaps = 1/121 (0%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  
Sbjct: 1   SELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 122 DG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           D   S AA RYTE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT
Sbjct: 61  DDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGT 120

Query: 181 S 181
           +
Sbjct: 121 T 121


>gi|157953897|ref|YP_001498788.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella virus
            AR158]
 gi|156068545|gb|ABU44252.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella virus
            AR158]
          Length = 1062

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 85/470 (18%), Positives = 174/470 (37%), Gaps = 45/470 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                 ++     V +   +++  + ++     ER+IP + DGFKP  R++I++  +  L 
Sbjct: 619  EPGNQLDHKKPEVPVPDFIDKELILFSRYD-LERSIPSVVDGFKPSQRKVIYSAFKRNLT 677

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A+  G V      H HG+ S+  ++V LAQ +        +  +G FG+   
Sbjct: 678  TD---VKVAQFSGYVAEHSAYH-HGEASLQGTIVNLAQDYVGSNNINWLLPEGQFGSRLQ 733

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   ++      +    D++ + +    + +  EP  +    P++L NG+S
Sbjct: 734  GGKDHASARYIFTKLNPQTRQVFVDTDDNLLKYLYD-DGDKIEPEYYVPVIPSILVNGSS 792

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IPS+N ++I +    L              I G D           +   +
Sbjct: 793  GIGTGWSTNIPSYNPKDIVDNVKRL--------------IAGEDLVEMKPWYRGFKG--K 836

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                    +  +  +           IVV+E+P         E +  L+  K I    + 
Sbjct: 837  IEETSPDVYVTKGLY-----MPNGKTIVVSELPIGKWTQDYKEHLDGLLEKKIISDFREK 891

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
              ++     I            L              +          ++ +      I+
Sbjct: 892  HTDTDVLFEIDFIGNPNVDILKLETTIRSTNMHAFDPYG---------KIKKYDTPLDII 942

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE---IIAIIRNEDKPKPVMV 418
            +EW   R+++  +R ++ ++ +  R  I +        +++   II      D    +  
Sbjct: 943  REWFGVRKDLYVKRKAYLLEDLTHRTNIAQNKYRFITMVNDGEIIINKRNESDISAELEK 1002

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
             +F   +++ D +LN+R+ SL      ++K E   L  E + +     + 
Sbjct: 1003 LKFYKVDDKYDYLLNMRISSLTLERAEELKRESVKLEKELDDLSKTTETD 1052


>gi|28629434|gb|AAO32080.1| topoisomerase IV [Acinetobacter genomosp. 13]
          Length = 109

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 56/109 (51%), Positives = 79/109 (72%), Gaps = 1/109 (0%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPV RRI++AMSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP
Sbjct: 1   KPVQRRIVYAMSELGLKNSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 111 LISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           LI GQGN+G+ D   S AA RYTEA+++  +EL+L  + +   +++D +
Sbjct: 61  LIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNF 109


>gi|168480769|gb|ACA24478.1| DNA gyrase [Wolbachia endosymbiont of Romanomermis iyengari]
          Length = 107

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 64/103 (62%), Positives = 80/103 (77%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RAIPD+RDGFKPVHRRI++AMS+ G D G  +KK+A IVGEVIGK HPHGD +VYDS+
Sbjct: 5   ISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPYKKAAGIVGEVIGKYHPHGDAAVYDSM 64

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VR+AQ F     L+ G GNFG++ GD AA+ RYTEAR+  V++
Sbjct: 65  VRMAQDFTLLILLVDGHGNFGSVGGDPAASMRYTEARLQGVSQ 107


>gi|213619192|ref|ZP_03373018.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 318

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 92/296 (31%), Gaps = 8/296 (2%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           + S  +    I  E+  +++ F           +         +     +       V  
Sbjct: 1   MGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQGYVKY 60

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
                  + +      SA   KE D +   L A+T D IL  S+ G+ Y +    L    
Sbjct: 61  QPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEAS 120

Query: 585 G--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G  I  L+ L  N+ I        Y+    + + ++ G       +E       G 
Sbjct: 121 RGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGI 180

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             + ++  +++  V   +G D V +     K++ F  D +  M R   GVR         
Sbjct: 181 IAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDK 240

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +     EG   +      Y +           R   G +  K   R+G  + +
Sbjct: 241 VVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGA 295



 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 5/154 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +         +  S  + A++  +GD L        +D ++L S  GK       + + 
Sbjct: 163 TVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFK-EDAVR 221

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKT 640
             G        I L  +  +V+  +      +L V+  G        E    +R   G  
Sbjct: 222 AMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVI 281

Query: 641 FLKVSS-EEKMKLVVKVTG-DHVAVVGENRKLLI 672
            +KV+     +   V+V   D + ++ +   L+ 
Sbjct: 282 SIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVR 315


>gi|171683279|ref|XP_001906582.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941599|emb|CAP67253.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1767

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 75/405 (18%), Positives = 157/405 (38%), Gaps = 24/405 (5%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++   + +S    L+  ++ ++++    R+IP + DGFKP  R++I++  +  L  
Sbjct: 777  PGTFLDSTAQRISYSQFLQNEFILFSMADNI-RSIPSMIDGFKPGQRKVIYSAFKRNLVN 835

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                +K   + G +      H HG+QS+  +++ LAQ F        +   GNFG+    
Sbjct: 836  D---QKVVELAGYISEQAAYH-HGEQSLQQTIIGLAQTFVGSNNVNCLEPSGNFGSRLSG 891

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  +A+ RY   R++  A  +   +DE  ++++   +    EP V+    P +L NG  G
Sbjct: 892  GKDSASARYIHTRLSPFARKVFSKLDEPNLEYQFD-DGNMIEPKVYAPILPMVLVNGADG 950

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +TSIP+++   I E     +   +    +   ++    +          +     
Sbjct: 951  IGTGWSTSIPNYHPMHIVENLRRRMGRFDPDDTEEKPFVPMAPW------WRGWKG--TP 1002

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-EDI 301
             +     +R      + +  +    I VTE+P ++       K+ ++I   + P   +D 
Sbjct: 1003 EQEAPNKWRFNGI--IRQDEQNPNEIHVTELPIRMWTDDFKAKLEDIIQNDKTPTFIKDY 1060

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            ++ +       +   +       L E +     + T       V    +  ++   D + 
Sbjct: 1061 KEFNDHKTVHFIIDMDEKHREAALREGLLEKFKLTTTVSTTNLVAFDTQG-KIRKYDNVE 1119

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +    +    L   +  +   +       + L   Y  I EII  
Sbjct: 1120 EIMEEYYHYRLKMYTERKKHWLKVYHADYRKLKNQYRFITEIIDN 1164


>gi|28865596|emb|CAD48112.1| gyrase A subunit [Haemophilus influenzae]
          Length = 108

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 60/108 (55%), Positives = 82/108 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+S
Sbjct: 61  VRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 108


>gi|154270939|ref|XP_001536323.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
 gi|150409546|gb|EDN04990.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
          Length = 1808

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 161/402 (40%), Gaps = 35/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++     ++    + +  + ++++    R+IP + DG KP  R++++   +  + 
Sbjct: 779  KPGTFLDHTTDEITYTDFVNKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFKRNVK 837

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A + G V+G      HG+QS+  +++ LAQ F        +   GNFG+   
Sbjct: 838  KD---VKVAELSGYVLGMTAYQ-HGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQ 893

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++  A  I    DE  + +    + +  EP ++    P +L NG  
Sbjct: 894  GGSDAASPRYIYTRLSPFARRIFHEADEPLLTYNVD-DGQVIEPEIYFPVVPMILINGAE 952

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +EI      L+    +   +                        E
Sbjct: 953  GIGTGWSTSIPNYNPEEIVANLKRLMAGEPLVPMEP--------------WFRGFTG--E 996

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
               +G   ++   R        G   + +TE+P +       +++ E+I A+++P   +D
Sbjct: 997  VVSMGGERYKFSGRIS----QIGDNEVEITELPIRSWTQDFKDRLEEIIKAEKVPSFIKD 1052

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
             +D +       +   +       + E +     +      +  V     GR+ +   ++
Sbjct: 1053 YKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFKLTKTIATSNLVAFDPEGRITKYESVE 1112

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             IL+E+ + R ++  +R   ++  + + +E +         I
Sbjct: 1113 EILREFFSVRLKLYEKRKQHQLSQMQKDLEKMTNQARFVQMI 1154


>gi|168033077|ref|XP_001769043.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679677|gb|EDQ66121.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1172

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 70/402 (17%), Positives = 158/402 (39%), Gaps = 33/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++   + ++ R  + +  + ++++    R+IP + DG KP  R+I+    +    
Sbjct: 664  EPGTFLDMTAEKINYRDFVNKELILFSMAD-LARSIPSMVDGLKPGQRKILFCCFKRNFV 722

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
              A   K A+  G V      H HG+ S+  +++ +AQ F       L+S +G FG    
Sbjct: 723  TQA---KVAQFSGYVSEHSAYH-HGEASLASTIIGMAQNFVGSNNINLLSPEGQFGTREQ 778

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G + A+ RY    +  +   +    D+  +D+    + +  EP  +    P +L NG+ 
Sbjct: 779  GGKNHASPRYIFTCLAPITRALFPQADDVLLDYLK-EDGQSIEPTWYCPIIPLVLVNGSE 837

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++ +P++N +EI      L+   E+                     +  +  +E
Sbjct: 838  GIGTGWSSFVPNYNPREIVANLRRLLAGQEMEPMHP--------------WYKGFKGSIE 883

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLL 298
                   GF       ++++      I ++E+P +       E +  ++      + P +
Sbjct: 884  CSATKDSGFTYTITGAIDQIDE--TTIKISELPVRKWTQDYKEFLDVMMTPSDKNKEPFI 941

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMP 356
            +D R+ + +         +       L E +     + T    +   L   +  + +   
Sbjct: 942  KDFREHNTDTKVHFELSLSEENMAIALAEGLVKKFKLTTTISTSNMHLFDNKGIIKKYDT 1001

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             + IL+E+   R ++  +R + ++Q ++  +  +   +   L
Sbjct: 1002 PEQILEEFFHIRLDMYVKRKAVQLQNLEYELHKVDNKVRFIL 1043


>gi|240280878|gb|EER44382.1| DNA topoisomerase 2 [Ajellomyces capsulatus H143]
          Length = 1737

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 76/402 (18%), Positives = 160/402 (39%), Gaps = 35/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++     ++    + +  + ++++    R+IP + DG KP  R++++   +  + 
Sbjct: 779  KPGTFLDHTTDEITYTDFINKELILFSMADNI-RSIPSVIDGLKPGQRKVLYTCFKRNVK 837

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A + G V+G      HG+QS+  +++ LAQ F        +   GNFG+   
Sbjct: 838  KD---VKVAELSGYVLGMTAYQ-HGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQ 893

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++  A  I    DE  + +    + +  EP ++    P +L NG  
Sbjct: 894  GGSDAASPRYIYTRLSPFARRIFHEADEPLLTYNVD-DGQVIEPEIYFPVVPMILINGAE 952

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +EI      L+    +   +                        E
Sbjct: 953  GIGTGWSTSIPNYNPEEIVANLKRLMAGEPLVPMEP--------------WFRGFTG--E 996

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
               +G   ++   R        G   + +TE+P +       +++ E+I A+++P   +D
Sbjct: 997  VVSMGGERYKFSGRIS----QIGDNEVEITELPIRSWTQDFKDRLEEIIKAEKVPSFIKD 1052

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       + E +     +      +  V      R+ +   ++
Sbjct: 1053 YKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFKLTKTIATSNLVAFDSEGRITKYESVE 1112

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             IL+E+ + R ++  +R   ++  + + +E +         I
Sbjct: 1113 EILREFFSVRLKLYEKRKQHQLSQMQKDLEKMTNQARFVQMI 1154


>gi|84995060|ref|XP_952252.1| DNA topoisomerase II [Theileria annulata strain Ankara]
 gi|65302413|emb|CAI74520.1| DNA topoisomerase II, putative [Theileria annulata]
          Length = 1369

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 71/388 (18%), Positives = 152/388 (39%), Gaps = 46/388 (11%)

Query: 10   NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             T V+ ++K +     + +  + +++    ER+IP + DGFKP  R+++    +  L   
Sbjct: 651  GTTVDHSIKKLRYSDFINKELIQFSIYD-TERSIPSVIDGFKPGQRKVLFGCFKRNLKNE 709

Query: 70   AAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                K A++ G +      H HG+ S+  +++ +AQ +       L+   G FG+    G
Sbjct: 710  ---CKVAQLTGYIAEHSAYH-HGENSLQQTIINMAQDYVGSNNINLLLPCGQFGSRKEGG 765

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY   +++ +   I    D+  +D++   + +  EP  +    P +L NG  GI
Sbjct: 766  KDAAAARYIFTKLSPLTRYIFLQEDDPILDYQ-NDDGQIIEPYYYLPIIPMVLVNGAEGI 824

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IPS+N  +I +  +  +DN ++                          ++  Y
Sbjct: 825  GTGFSTFIPSYNPIDIIDNIVNFLDNKDM------------------------NDMIPWY 860

Query: 244  RLGRGGFRVRAR--WCV---EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIP 296
            R  +G     ++  + +    E+      +V+TE+P     +   E +  ++    +   
Sbjct: 861  RNFKGTVTRNSKLGYDIIGNYELNHSINQLVITELPINRWTNDYREYLNSIMATNKEDEG 920

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
             + D  D S+ +          +     + + I  +  ++T    +  +L      ++  
Sbjct: 921  YITDYGDFSSNEFIK--IKIKLNDSGPDITDDIEKVFKLKTTISTSNMILFD-CNKRIKK 977

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAID 384
             +G +          +   +  R   I 
Sbjct: 978  YNGAIDILKDFITTRVKYYTKRREYMIK 1005


>gi|116194666|ref|XP_001223145.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
 gi|88179844|gb|EAQ87312.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
          Length = 1715

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 92/558 (16%), Positives = 202/558 (36%), Gaps = 62/558 (11%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++      S    + +  + ++++    R+IP + DG KP  R++I+   +  L  
Sbjct: 767  PGTYLDATAARKSYTDFVHKELILFSMADNM-RSIPSMVDGLKPGQRKVIYGAFKRNLVN 825

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                +K A + G +      H HG+ S+  ++V LAQ +        +   GNFG+    
Sbjct: 826  D---QKVAELAGYISEVAAYH-HGEVSLQQTIVGLAQTYVGSNNVNCLEPSGNFGSRLSG 881

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  AA+ RY   R++  A  I   +DE  ++++   +    EP V+    P +L NG  G
Sbjct: 882  GSDAASARYIHTRLSPFARRIFSKLDEPNLEYQFD-DGNMIEPKVYVPILPMVLVNGADG 940

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +TSIP+++  EI +     +   +    +   +                + ++ES
Sbjct: 941  IGTGWSTSIPNYHPIEIVDNLKRRMGRLDPEDSEEKAFKPM------TPWFRGWKGVLES 994

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-EDI 301
               G   ++      +++  +    I VTE+P ++       K+ +++ A++ P   +D 
Sbjct: 995  --DGPNRYKFNGI--IQQDEQNPNEIHVTELPIRMWTDDFKSKLEDILRAEKTPSFIKDY 1050

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDG 359
            R+ +       +           L E +     +         V    R  + +    + 
Sbjct: 1051 REFNDHQTVHFIIDMEDKHMKAALDEGLLEKFKLSKSMTTTNLVAFNTRGQIHKYENPEE 1110

Query: 360  ILKEWLAHRREVLFRR-----------SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
            I++E+  +R  +   R                      +EI++  LI      +++    
Sbjct: 1111 IMEEFYHYRFNMYTERKKHWLGVYHADYRKLKNQYRFILEIIENKLIVNKKKKDVLVQEL 1170

Query: 409  NEDKPKPVMVSRFSLTE--------------------NQVDAILNLRLRSLRKLEEYQIK 448
             + K +         ++                       D +L++ + SL      ++K
Sbjct: 1171 RDRKYEAFPPKDDKKSKSTDEELGKDDAEDEDTSNGARDYDYLLSMPIWSLTNERLEKLK 1230

Query: 449  SE------LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
            ++        + L    + D  +    +  ++   +++   EI +    +GRR +     
Sbjct: 1231 NQIAAKKAEHDELDALSEKDLWIKDLDEFVDEWHTQLKLDAEITADIRRMGRRTSRKIGA 1290

Query: 503  SRADKATLQQAMIEKEPI 520
             R  +         ++  
Sbjct: 1291 GRGRRPKDDDEYAPEKKT 1308


>gi|321268240|gb|ADW78928.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 106

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 84/105 (80%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++ M ++G+   +A KKSARIVGEV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           GNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDD 105


>gi|219121760|ref|XP_002181228.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407214|gb|EEC47151.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1143

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 81/505 (16%), Positives = 164/505 (32%), Gaps = 45/505 (8%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            +  D   N + + +E V        +   Y+ ++ S   ER+IP L DGFKP  R+I+ A
Sbjct: 649  IAKDTFLNYSEVSKEGVM---YSEFINREYILFSKSD-NERSIPHLLDGFKPSQRKILFA 704

Query: 61   MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQG 116
              +  L       K A++ G V      H HG+ S+  ++V +AQ F       L++  G
Sbjct: 705  CFKRKL---KGEIKVAQLTGYVAEHSAYH-HGEASLQATIVNMAQNFCGSNNINLLTPSG 760

Query: 117  NFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
             FG     G  AA+ RY   ++  +   I    D++ + +    +    EP  +    P 
Sbjct: 761  QFGTRRMGGKDAASARYIFTKLEPITRAIFHPDDDELLSYI-NDDGVTVEPEYYVPVIPM 819

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
            +L NG  GI  G +TS+ ++N +EI              +  L   I G DF        
Sbjct: 820  ILVNGADGIGTGWSTSVNNYNPREI--------------VRNLRRKIAGEDFVAMAPFYS 865

Query: 235  SRES-IVESYRLGRG--GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
              +  I+      R    + +  +            I+++E+P +         +  ++ 
Sbjct: 866  GFKGEIIPVDSNSRRSGSYDMLGKVE----RINDTTIIISELPVRKWTQDYKAFLEIMLT 921

Query: 292  AK------RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                     I    +   E+     I+   +            +       +    NM +
Sbjct: 922  GDGKKKLPEIKDFTENHTETTVSFTIIAEKEKIDEFEKEKAGLMGKFKLTGSLSTSNMTL 981

Query: 346  LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
                           +        ++       R + + ++++  +  L       E + 
Sbjct: 982  FDERGRITRFEDPESIMNAF---YDIRLDFYDKRKRLLVKKLKEEQRKLSNKARFVEEVC 1038

Query: 406  IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
             +      +        L     +              + +  S  ++    +       
Sbjct: 1039 RVELVVNNRKRQDILHELRNRGYETFGADARSKETSDSDGEEDSINESQSDAELARGYEY 1098

Query: 466  NSGKQQWNQIACEIREVKEIFSKST 490
              G + W+    +  E++    + T
Sbjct: 1099 LLGMKIWSLTFEKAEELRRKLGEKT 1123


>gi|150951045|ref|XP_001387295.2| DNA topoisomerase II [Scheffersomyces stipitis CBS 6054]
 gi|149388275|gb|EAZ63272.2| DNA topoisomerase II [Pichia stipitis CBS 6054]
          Length = 1439

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 155/400 (38%), Gaps = 34/400 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ N+  + +   + +  + ++++    R+IP + DGFKP  R++++   +  L  
Sbjct: 726  PGTHLDPNLTEIPISDFINQELILFSMADNV-RSIPSVLDGFKPGQRKVLYGCFKRNLKS 784

Query: 69   GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++ G V  K   H HG+QS+  +++ LAQ F       L+   G FG     
Sbjct: 785  E---IKVAQLSGYVSEKTGYH-HGEQSLVQTIIGLAQNFVGSNNINLLKPNGAFGTRAAG 840

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   +A RY    ++++   I   +D+    +    +E+  EP  +    P LL NG+ G
Sbjct: 841  GKDFSAARYIFTEISKITRAIFNPLDDPIYTYVQD-DEQSVEPEWYLPVIPMLLVNGSEG 899

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T+IPS+N  ++ +    L              + G          +  E  +E 
Sbjct: 900  IGTGWSTNIPSYNPLDLVDNIRRL--------------MNGEPMEEMKPWFKGWEGTIEP 945

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
               G   ++V  +    +       + +TEIP +   + + E +   +  ++ P      
Sbjct: 946  N--GPDKYKVVGKIDQIDE----TTVEITEIPVKTWTNNVKEFLLAGLGNEKTPAWIKDM 999

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGI 360
            +E        +   +       L   +     + +   ++  V     GR+ +      I
Sbjct: 1000 EEQHGLNIRFVVKMSPDEMAKALKVGLLEKFKLISSISMSNMVAFDPLGRIKRYSSAQEI 1059

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            L+++   R E   +R  F M  +  ++            I
Sbjct: 1060 LRDYYYVRLEYYQKRKDFMMDELQNQLTKFSEQARFVKMI 1099


>gi|164604815|gb|ABY61968.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 79/105 (75%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+      KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF  R  L+ G GNFG++DGD
Sbjct: 1   GVTPDKPHKKSARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRAMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P
Sbjct: 61  GAAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLP 105


>gi|319827192|gb|ADV74813.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 52/116 (44%), Positives = 81/116 (69%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F   F+KSA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            G++DGD AAA RYTEAR++++A  +LQ +D++ V F   +++ + EP V P+ FP
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|1536962|emb|CAA69173.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 102

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 55/102 (53%), Positives = 80/102 (78%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G
Sbjct: 1   RRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            GNFG++DGDSAAA RYTEARM+++A  +L+ ++++ VDF D
Sbjct: 61  HGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVD 102


>gi|238652843|emb|CAR63881.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 49/103 (47%), Positives = 76/103 (73%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDAAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
           +DGDS A+ RYTEA+M++++  +L+ ++++ VDF+  ++E   
Sbjct: 61  VDGDSPASMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLK 103


>gi|2501297|sp|P87078|TOP2_CANAL RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|2113829|emb|CAA71405.1| topoisomerase II [Candida albicans]
          Length = 1461

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 155/410 (37%), Gaps = 38/410 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  +  + +   + + ++ +++S    R+IP + DGFKP  R++++   +  L  
Sbjct: 719  PGTHLDPEITEIPISDFINKEFILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRS 777

Query: 69   GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++ G V      H HG+QS+  +++ LAQ F       ++   G+FG+    
Sbjct: 778  E---IKVAQLAGYVSENTGYH-HGEQSLVQTIIGLAQNFVGSNNINVLKPNGSFGSRAAG 833

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   +A RY    ++++   I   +D+    +    +E+  EP  +    P +L NG  G
Sbjct: 834  GKDFSAARYIFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPEWYLPVLPMILVNGAEG 892

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T+IPS+N              P+  +  +   + G +        +     +E 
Sbjct: 893  IGTGWSTNIPSYN--------------PKDLVTNIRRLMNGEELQEMTPWYKGWGGDLEP 938

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK-IAELIIAKRIPLLEDI 301
               G   F+V  R    +       + +TEIP +   + + E  ++     K  P ++D+
Sbjct: 939  M--GPQKFKVSGRIEQIDSNT----VEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDM 992

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP----- 356
             +     +R V+   +  +   L +  +     + +    NM         +        
Sbjct: 993  EEHHTTSIRFVVKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEI 1052

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +       L + ++     +      +    E  + + +       +   
Sbjct: 1053 IKDFYYVRLEYYQKRKDYMTDNLQNQLLMLSEQARFIKMIIEKQLSVANK 1102


>gi|126341720|ref|XP_001380856.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase II,
            beta isozyme) [Monodelphis domestica]
          Length = 1756

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 180/505 (35%), Gaps = 35/505 (6%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 849  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 904

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 905  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIF 963

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 964  TMLSTLARLLFPSVDDNLLKFLYD-DNQRVEPEWYMPIIPMVLINGAEGIGTGWACKLPN 1022

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + I      G+  + V 
Sbjct: 1023 YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEI------GQNQYAVS 1066

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 1067 GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 1125

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 1126 VKMTEEKLVQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLNY 1185

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1186 YSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKRDLIQMLVQRGYESDPVKA 1245

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ--QWNQIACEIREVKEIFS 487
                    +  +  + Q      +         + + +        +   E+ + ++   
Sbjct: 1246 WKEAQEKAAEEEETQNQRDDSSSDSGTTSGPDFNYILNMSLWCLTKEKVEELIKQRDTKG 1305

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +  +R++          A +++
Sbjct: 1306 RELNDLKRKSPSDLWKEDLAAFVEE 1330


>gi|312977113|ref|ZP_07788862.1| DNA gyrase, A subunit [Lactobacillus crispatus CTV-05]
 gi|310896441|gb|EFQ45506.1| DNA gyrase, A subunit [Lactobacillus crispatus CTV-05]
          Length = 415

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 136/351 (38%), Gaps = 23/351 (6%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           M+SRF L + Q  AIL++RL  L  LE  ++++E   L A+      +L+  ++    I 
Sbjct: 1   MISRFGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILSKPERIDQIIY 60

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--- 533
            E+ ++++ F       +RRT     +    +   + +IEK+ I + +++ G+I+ +   
Sbjct: 61  DELLDIQKRFGD-----KRRTEIG--ASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQ 113

Query: 534 -----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
                      +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +       +
Sbjct: 114 EFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRAAK 173

Query: 589 --AIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              +  L+ L   + + T            L  V+  G       SE       G   L 
Sbjct: 174 GLPVVNLLQLEKGEKVQTVINIPEGADDNYLFFVTKMGTVKRTHVSEFSNIRNSGLIALT 233

Query: 644 VSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   +++  V+   G    ++G +    + F+   +  M R   GVR  + ++       
Sbjct: 234 LKDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRAMGRTAAGVRGINLREHDYVVGS 293

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +    +  + + Y +        +  RGG G        ++G    
Sbjct: 294 GILGADD-QVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKNGPLAG 343



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 6/193 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            +  L AL  K+GD L   L       IL+ +  G A T   G++ +
Sbjct: 212 TVKRTHVSEFSNIRNSGLIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRA 271

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                 A    I+L  +  +V + +  +  ++LV+S KG       SE     R GK   
Sbjct: 272 MGRTA-AGVRGINLREHDYVVGSGILGADDQVLVISEKGYGKRTPASEYPVKGRGGKGIK 330

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     + +  + + V V+  +  ++ F ID + +  R   GVRL    D   
Sbjct: 331 TANITEKNGPLAGVTIINSNNDVMVITTDGIMIRFRIDDVSQTGRSTMGVRLIKVSDDSQ 390

Query: 698 SDVICFKICEGLT 710
              +     E   
Sbjct: 391 VASLTVVPTEEEQ 403


>gi|327349241|gb|EGE78098.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1804

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 80/402 (19%), Positives = 162/402 (40%), Gaps = 35/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++   + ++    + +  + ++++    R+IP + DG KP  R++++   ++ + 
Sbjct: 775  KPGTFLDHTTEEITYTDFINKELILFSMADNI-RSIPSVIDGLKPGQRKVLYTCFKLNVK 833

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A + G V+G      HGD S+  +++ LAQ F        +   GNFG+   
Sbjct: 834  KD---MKVAELSGYVLGLTAYQ-HGDASLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQ 889

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++  A  I    D   + +    + +  EP  +    P +L NG  
Sbjct: 890  GGSDAASPRYIYTRLSPFARRIFHEADGPLLTYNVD-DGQVIEPETYFPVVPMILINGAD 948

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +EI      L+      +  +  +  G    TG ++    E    
Sbjct: 949  GIGTGWSTSIPNYNPEEIVANIKRLMVG--EPVVPMQPWFRG---FTGEVVSMGGE---- 999

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
                       R ++       G   I +TE+P +       +++ E+I A++IP   +D
Sbjct: 1000 -----------RYKFSGRFSQIGDNEIEITELPIRSWTQDFKDRLEEIIKAEKIPSFIKD 1048

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       + E +     +      +  V      R+ +    +
Sbjct: 1049 YKDYNTHTKVHFVIQLDEKHAKKAIAEGLEEKLKLTKTLATSNLVAFDSEGRITKYESPE 1108

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             IL+E+ + R ++  +R   ++  + + +E L         I
Sbjct: 1109 HILQEFYSVRIKLYEKRKQHQLSQMQKDLEKLSNQARFVQMI 1150


>gi|46136571|ref|XP_389977.1| hypothetical protein FG09801.1 [Gibberella zeae PH-1]
          Length = 1650

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 80/405 (19%), Positives = 159/405 (39%), Gaps = 37/405 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K +     +    + ++++    R+IP + DGFKP  R++I+A  +  L  
Sbjct: 755  PGTFLDHSAKQICYSDFINRELILFSMADNM-RSIPSVLDGFKPGQRKVIYACFKRNLIK 813

Query: 69   GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K   + G V  +   H HG+QS+  +++ LAQ F        +   GNFG+    
Sbjct: 814  DK---KVVELAGYVSEQTAYH-HGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLAG 869

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT-----YNEEDSEPVVFPSKFPNLLA 177
            G  AA+ RYT  R++  A  I   +DE              + +  EP+V+    P +L 
Sbjct: 870  GSDAASPRYTFTRLSPFARKIFHPMDE------PNLLHHYEDGKKIEPMVYAPILPMVLV 923

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +++IP+++  +I +     +   + +  +   +       T        +
Sbjct: 924  NGADGIGTGWSSNIPNYHPADIVQNLRRRMGRLDENDTEEKPF------ETMMPWFRGWK 977

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP- 296
                    G   ++        E       IV+TE+P +V       K+ ++I  +  P 
Sbjct: 978  G--TPEAAGPDRYKFNGVAYANEQKDNE--IVITELPIRVWTDDFKAKLEKVISGELGPS 1033

Query: 297  ---LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
                 ++  D S     I +  K+     +  +   F L+  +      +   + GR+ +
Sbjct: 1034 WIKDYKEFNDHSTVHFEIAVDDKHMGKVMEEGILERFKLTK-QVATSNLVAFDTSGRIRK 1092

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
               ++ IL+E+  +R ++   R    +      +  L+       
Sbjct: 1093 YEKVEEILEEFYQYRLDMYTDRKKHWLGVYHADLRKLQNQARFIK 1137


>gi|238652881|emb|CAX46372.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 104

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 77/104 (74%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           +DGDS AA RYTEA+M++++  +L+ ++++ VDF+  ++E   E
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKE 104


>gi|28916602|gb|AAO59534.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 217

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 97/218 (44%), Positives = 148/218 (67%), Gaps = 1/218 (0%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMA
Sbjct: 1   MRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMA 60

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ E  LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG
Sbjct: 61  TNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRG 119

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +
Sbjct: 120 FITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRN 179

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
              ++    R  +  +++ +++  + ++T F +N+  L
Sbjct: 180 GMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 217


>gi|239610333|gb|EEQ87320.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ER-3]
          Length = 1804

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 80/402 (19%), Positives = 162/402 (40%), Gaps = 35/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++   + ++    + +  + ++++    R+IP + DG KP  R++++   ++ + 
Sbjct: 775  KPGTFLDHTTEEITYTDFINKELILFSMADNI-RSIPSVIDGLKPGQRKVLYTCFKLNVK 833

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A + G V+G      HGD S+  +++ LAQ F        +   GNFG+   
Sbjct: 834  KD---MKVAELSGYVLGLTAYQ-HGDASLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQ 889

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++  A  I    D   + +    + +  EP  +    P +L NG  
Sbjct: 890  GGSDAASPRYIYTRLSPFARRIFHEADGPLLTYNVD-DGQVIEPETYFPVVPMILINGAD 948

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +EI      L+      +  +  +  G    TG ++    E    
Sbjct: 949  GIGTGWSTSIPNYNPEEIVANIKRLMVG--EPVVPMQPWFRG---FTGEVVSMGGE---- 999

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
                       R ++       G   I +TE+P +       +++ E+I A++IP   +D
Sbjct: 1000 -----------RYKFSGRFSQIGDNEIEITELPIRSWTQDFKDRLEEIIKAEKIPSFIKD 1048

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       + E +     +      +  V      R+ +    +
Sbjct: 1049 YKDYNTHTKVHFVIQLDEKHAKKAIAEGLEEKLKLTKTLATSNLVAFDSEGRITKYESPE 1108

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             IL+E+ + R ++  +R   ++  + + +E L         I
Sbjct: 1109 HILQEFYSVRIKLYEKRKQHQLSQMQKDLEKLSNQARFVQMI 1150


>gi|321251923|ref|XP_003192225.1| DNA topoisomerase II [Cryptococcus gattii WM276]
 gi|317458693|gb|ADV20438.1| DNA topoisomerase II, putative [Cryptococcus gattii WM276]
          Length = 1377

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 80/407 (19%), Positives = 155/407 (38%), Gaps = 44/407 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +++++ +   + +  + ++++    R+IP + DG KP  R+++    +  L 
Sbjct: 752  KPGTYLDHDIQSLPISDFVNKELILFSMADNI-RSIPSVADGLKPGQRKVLFGCFKRNLT 810

Query: 68   FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++ G V  K   H HG+ S+  ++V LAQ F       L+   G FG    
Sbjct: 811  ---KEIKVAQLAGYVSEKTAYH-HGEASLTSTIVGLAQNFVGSNNINLLDPNGQFGTRLA 866

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLAN 178
             G  AA+ RY    + ++   I    D+        Y   +    EP  F    P +L N
Sbjct: 867  GGKDAASARYIFTNLPRMTRAIFHPADDG----LLNYLIEDGMSIEPDYFMPTVPMVLIN 922

Query: 179  GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
            G  GI  G +T+IP++N  +I E               L   + G +           + 
Sbjct: 923  GADGIGTGWSTAIPNYNPVDIVE--------------NLRRMMRGEEPEEMTPWFRGFKG 968

Query: 239  IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-----IIAK 293
             +E  R+ +  ++V  +            + +TE+P +       E + E+      + +
Sbjct: 969  SIE--RIDQDKYKVSGKIE----KINDTTLEITELPIRRWTQDFKEMLEEMTTGTDKVPQ 1022

Query: 294  RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
             I   E+   ++    R+ +  KN +       +  F L+         +     G++ +
Sbjct: 1023 TIKDYEEHHTDTTVHFRVHMTEKNLADAEKEGFDKRFKLT-TSLGTGNMVCFDLNGKIKK 1081

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
                + IL+E+   R E    R       ++R+ E L         I
Sbjct: 1082 YASPEEILEEFFHKRLEFYGHRKQHLADELNRQFERLSNQARFVHMI 1128


>gi|91093529|gb|ABE11586.1| ParC [Escherichia coli]
          Length = 107

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 81/106 (76%), Gaps = 1/106 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD++ Y+++V +AQPF
Sbjct: 2   IGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQPF 61

Query: 106 VQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDED 150
             RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L  + + 
Sbjct: 62  SYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQG 107


>gi|39975823|ref|XP_369302.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
 gi|145011529|gb|EDJ96185.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
          Length = 1680

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 87/517 (16%), Positives = 187/517 (36%), Gaps = 35/517 (6%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K ++    + +  + ++++    R+IP + DG KP  R++I A  +  L  
Sbjct: 782  PGTFLDHSTKQITYSDFVNKELILFSMADNM-RSIPSMIDGLKPGQRKVIFACFKQNLVK 840

Query: 69   GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K   + G V  K   H HG+ S+  +++ LAQ +        +   GNFG+    
Sbjct: 841  DK---KVVELAGYVSEKAAYH-HGEASLQQTIIGLAQNYVGSNNVNCLEPSGNFGSRLQG 896

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  AA+ RY   R++  A  +   +DE  +  +   + +  EP V+    P +L NG  G
Sbjct: 897  GSDAASARYIHTRLSPFARRVFNPLDEPVLQHQVD-DGKAIEPKVYAPVIPMVLVNGADG 955

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +TSIP+++ +EI       +   ++  E+  E +               +   E 
Sbjct: 956  IGTGWSTSIPNYHPEEIVRNIKRRMGRLDVPEEQEFEPM--------TPWWRGWKGTPEP 1007

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDI 301
                R  F+      +++       +V+TE+P ++       ++ E+I A++ P  ++D 
Sbjct: 1008 EDASRIRFKFNGIANLDDKNPNE--VVITELPIRMWTDDFKARLEEIIRAEKTPSWIKDY 1065

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            ++ +       +   +     +       +L   + +  + +  L               
Sbjct: 1066 KEFNDHKNVHFIIQLDEKHMKEFRDSPNLLLERFKLQKNVAITNLVAFDT-------NGQ 1118

Query: 362  KEWLAHRREVLFRRSSFRMQ-AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
                    ++L     +R+     R+   L+     Y  +      I      K V+  +
Sbjct: 1119 IRKYDKVEDILEEFYHYRLNVYAARKAHWLRVFDADYRKLTNQYRFISEIIDGKLVVSKK 1178

Query: 421  FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ--WNQIACE 478
                   V  +   +     K E  +   + +    ++E+ +    + +Q   W+     
Sbjct: 1179 KK--SVLVQELRQRKYEPFPKGETGKKAQDEEEEFEDEEEDERQETNKQQMAIWSLTHER 1236

Query: 479  IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  +K+             +  E     K      M 
Sbjct: 1237 LERLKKQLEAKKAEFDELNSKSEKDLWCKDLDDFVME 1273


>gi|10241567|emb|CAC09567.1| DNA gyrase subunit A [Bacteroides vulgatus]
          Length = 98

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 74/98 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHR I++ M E+G     A+KKSARIV
Sbjct: 1   INIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRSILYGMIELGNTSDKAYKKSARIV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           GEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGN
Sbjct: 61  GEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGN 98


>gi|261188733|ref|XP_002620780.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
 gi|239592012|gb|EEQ74593.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
          Length = 1758

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 80/402 (19%), Positives = 162/402 (40%), Gaps = 35/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++   + ++    + +  + ++++    R+IP + DG KP  R++++   ++ + 
Sbjct: 775  KPGTFLDHTTEEITYTDFINKELILFSMADNI-RSIPSVIDGLKPGQRKVLYTCFKLNVK 833

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A + G V+G      HGD S+  +++ LAQ F        +   GNFG+   
Sbjct: 834  KD---MKVAELSGYVLGLTAYQ-HGDASLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQ 889

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++  A  I    D   + +    + +  EP  +    P +L NG  
Sbjct: 890  GGSDAASPRYIYTRLSPFARRIFHEADGPLLTYNVD-DGQVIEPETYFPVVPMILINGAD 948

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +EI      L+      +  +  +  G    TG ++    E    
Sbjct: 949  GIGTGWSTSIPNYNPEEIVANIKRLMVG--EPVVPMQPWFRG---FTGEVVSMGGE---- 999

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
                       R ++       G   I +TE+P +       +++ E+I A++IP   +D
Sbjct: 1000 -----------RYKFSGRFSQIGDNEIEITELPIRSWTQDFKDRLEEIIKAEKIPSFIKD 1048

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       + E +     +      +  V      R+ +    +
Sbjct: 1049 YKDYNTHTKVHFVIQLDEKHAKKTIAEGLEEKLKLTKTLATSNLVAFDSEGRITKYESPE 1108

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             IL+E+ + R ++  +R   ++  + + +E L         I
Sbjct: 1109 HILQEFYSVRIKLYEKRKQHQLSQMQKDLEKLSNQARFVQMI 1150


>gi|238652839|emb|CAR63879.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 49/103 (47%), Positives = 76/103 (73%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
           +DGDS A+ RYTEA+M++++  +L+ ++++ VDF+  ++E   
Sbjct: 61  VDGDSPASMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLK 103


>gi|302422958|ref|XP_003009309.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
 gi|261352455|gb|EEY14883.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
          Length = 1688

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 149/387 (38%), Gaps = 24/387 (6%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K+++    +    + ++++    R+IP + DG KP  R+++ A  +  L  
Sbjct: 721  PGTYLDHSTKSITYDDFVNRELILFSMADNM-RSIPSVLDGLKPGQRKVMFACFKRNLTK 779

Query: 69   GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                +K   + G V  K   H HG+ S+  +++ LAQ F        +   GNFG+    
Sbjct: 780  D---QKVVELAGYVSEKAAYH-HGEMSLQQTIIGLAQNFVGSNNVNCLEPSGNFGSRLAG 835

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  AA+ RY   R++  A  I   +DE  ++ +   + +  EP V+    P +L NG  G
Sbjct: 836  GSDAASPRYIHTRLSPFARKIFSVLDEPNLEVQM-EDGKPIEPKVYAPIIPMVLCNGADG 894

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +TSIP+++  EI  A    +   +    +      G  F T        +   E 
Sbjct: 895  IGTGWSTSIPNYHPMEIVRAIKRRMGRLDSDDTE------GKPFETMMPWFRGWKGTPEP 948

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDI 301
                R  F       + E    +  I++ E+P ++       K+ E+I   + P  ++D 
Sbjct: 949  AEKDRYKFN-----GIYETDDKTGEIIIKELPIRMWTDDFKAKLEEVISGAKGPAWIKDY 1003

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            ++ +       +   +     D+      ++   +    +  + L        +     +
Sbjct: 1004 KEFNDHKNVNFVIQLDEKHYKDIHKTHEGIMDRFKLNKQVATSNLVAFDSTGRIRKYEKV 1063

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVE 388
            ++ L           S R +       
Sbjct: 1064 EDILEEFYVYRLDMYSARKKHWLGVYH 1090


>gi|50305715|ref|XP_452818.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641951|emb|CAH01669.1| KLLA0C13838p [Kluyveromyces lactis]
          Length = 1435

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/420 (18%), Positives = 150/420 (35%), Gaps = 43/420 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +  + +   + +  + ++L+    R+IP + DG KP  R++I+A  +  L 
Sbjct: 662  EPGTVLDPKLTEIPISDFINKELILFSLADNI-RSIPSVLDGLKPGQRKVIYACFKRNLK 720

Query: 68   FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++ G V      H HG+QS+Y ++V LAQ F       L+   G FG    
Sbjct: 721  SE---IKVAQLGGYVSEHTGYH-HGEQSLYQTIVGLAQDFVGSNNIYLLKPNGAFGTRAT 776

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLAN 178
             G  +AA RY    + ++   I   +D    D    Y   +E+  EP  +    P +L N
Sbjct: 777  GGKDSAAPRYIFTELNKLTRKIFNTLD----DPLLNYIQDDEQTVEPEWYLPVIPMVLVN 832

Query: 179  GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
            GT GI  G +T+IP  N  +I      L              + G +           + 
Sbjct: 833  GTEGIGTGWSTNIPPFNPMDIVNNVKRL--------------MKGEEMEQMAPWYRGWQG 878

Query: 239  IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIP 296
                 ++    +R   R    +       + +TE+P +   S + E   +      K  P
Sbjct: 879  --SLEKIDPQKYRTYGRIEQIDENT----LEITELPPKTWTSVIKEHLLLGLSGNDKVKP 932

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
             ++DI+ E        +                +    + +   L+  V       ++  
Sbjct: 933  WIKDIQ-EQHGATIKFIITLTSDEMEKTRKIGFYERFKLVSTVSLSNMVAFD-PQGKIKK 990

Query: 357  LDGILKEWLAHRRE-VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
             D +           + + +          + E+ K        +  +   +   +KP+P
Sbjct: 991  YDDVRDILSDFYYTRLTYYQKRKDYIGERLKWEVEKLSYQVKFIMMIVEKKLSVSNKPRP 1050


>gi|171850797|emb|CAP11081.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 95

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 53/95 (55%), Positives = 74/95 (77%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
             L+ G GNFG++DGDS AA RYTEA+M++++  +
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLEL 95


>gi|310795452|gb|EFQ30913.1| topoisomerase IV [Glomerella graminicola M1.001]
          Length = 1779

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 163/409 (39%), Gaps = 34/409 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K+++    + +  + ++++    R+IP + DG KP  R++I+A  +  L  
Sbjct: 769  PGTFLDHSTKSITYTDFVNKELILFSMADNM-RSIPSVVDGLKPGQRKVIYACFKRNLVK 827

Query: 69   GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                +K   + G +  +   H HG+ S+  +++ LAQ F        +   GNFG+    
Sbjct: 828  D---QKVVELAGYISEQTSYH-HGEVSLQQTIIGLAQNFVGSNNVNCLEPSGNFGSRLAG 883

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY-NEEDSEPVVFPSKFPNLLANGTS 181
            G  AA+ RY   R++  A  I   +DE  ++    Y + +  EP V+    P +L NG  
Sbjct: 884  GSDAASPRYIHTRLSPFARKIFSPLDEPNLE--PQYEDGKRIEPKVYAPIIPMILCNGAD 941

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP+++  +I       +   + S  +   +   P  P         +    
Sbjct: 942  GIGTGWSTSIPNYHPIDIVNNLKRRMGRLDPSNPEDAAFQ--PMMP----WFRGWKG--T 993

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
              +  +  ++      ++E    +  ++VTE+P ++       K+ E+I   + P  ++D
Sbjct: 994  PEQSEKDRYKFNGICEIDE---RTGEVIVTELPIRMWTDDFKAKLEEVISGTKGPVWIKD 1050

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
             ++ +       +   +     D+L + +     +  +   +  V    R        G 
Sbjct: 1051 YKEFNDHKNVHFVIQMDDKHTKDILADGLLERFKLSKQIATSNLVAFDTR--------GQ 1102

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
            ++++      +    +        R+   L      +  + E    IR 
Sbjct: 1103 IRKYEKVEDILEEFYNYRLDMYAQRKKHWLGVYHSDFRKLSEQARFIRE 1151


>gi|73990502|ref|XP_534241.2| PREDICTED: similar to DNA topoisomerase II, beta isozyme [Canis
            familiaris]
          Length = 2041

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 180/505 (35%), Gaps = 35/505 (6%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 1132 LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 1187

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 1188 GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 1246

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ ++ L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 1247 TMLSSLSRLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 1305

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 1306 YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 1349

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 1350 GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 1408

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 1409 VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1468

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1469 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1528

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLA--EKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                    +  +  + Q      +       +    L  S      +   E+ + ++   
Sbjct: 1529 WKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKG 1588

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +  +R++          A +++
Sbjct: 1589 REVNDLKRKSPSDLWKEDLAAFVEE 1613


>gi|29165271|gb|AAO65576.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Albany]
          Length = 101

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 57/101 (56%), Positives = 80/101 (79%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 101


>gi|224045386|ref|XP_002197470.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Taeniopygia guttata]
          Length = 1622

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 155/421 (36%), Gaps = 33/421 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 714  LTYNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 769

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 770  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIF 828

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 829  TMLSPLARLLFPSVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPN 887

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 888  YDTREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYVVS 931

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 932  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTEKTPALISDYKEYHTDTTVKFV 990

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 991  VKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLHY 1050

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1051 YSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKRDLIQMLVQRGYESDPVKA 1110

Query: 430  A 430
             
Sbjct: 1111 W 1111


>gi|28916604|gb|AAO59535.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 217

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 97/218 (44%), Positives = 148/218 (67%), Gaps = 1/218 (0%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMA
Sbjct: 1   MRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMA 60

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ E  LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG
Sbjct: 61  TNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRG 119

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +
Sbjct: 120 SIPIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRN 179

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
              ++    R  +  +++ +++  + ++T F +N+  L
Sbjct: 180 GMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 217


>gi|45384180|ref|NP_990413.1| DNA topoisomerase 2-beta [Gallus gallus]
 gi|3122959|sp|O42131|TOP2B_CHICK RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
 gi|2463529|dbj|BAA22540.1| DNA topoisomeraseII_beta [Gallus gallus]
          Length = 1627

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 155/421 (36%), Gaps = 33/421 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 719  LTYNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 774

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 775  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIF 833

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 834  TMLSPLARLLFPSVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPN 892

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 893  YDTREIVNNVRRMLDGLDPH----------PMLPNYKNFRGTIQEL------GQNQYVVS 936

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 937  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTEKTPALISDYKEYHTDTTVKFV 995

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 996  VKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLHY 1055

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1056 YSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKRDLIQMLVQRGYESDPVKA 1115

Query: 430  A 430
             
Sbjct: 1116 W 1116


>gi|46946652|gb|AAT06574.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 110

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 61/110 (55%), Positives = 85/110 (77%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VY+++VR+AQ F  RY LI GQGNFG++DG +AAA R
Sbjct: 1   AYKKSARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           YTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 61  YTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 110


>gi|45685139|gb|AAS75323.1| DNA gyrase subunit A [Corynebacterium striatum]
          Length = 112

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 77/112 (68%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE RMT +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG+ G
Sbjct: 61  YTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRVPNLLMNGSGG 112


>gi|297491323|ref|XP_002698796.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Bos taurus]
 gi|296472299|gb|DAA14414.1| topoisomerase (DNA) II beta 180kDa [Bos taurus]
          Length = 1707

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/505 (17%), Positives = 179/505 (35%), Gaps = 35/505 (6%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 801  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 856

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 857  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 915

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 916  TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 974

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 975  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 1018

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 1019 GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 1077

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 1078 VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1137

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1138 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1197

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLA--EKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                    +  +  + Q      +       +    L  S      +   E+ + ++   
Sbjct: 1198 WKEAQEKAAEEEESQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKG 1257

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQ 512
            +     +R++          A +++
Sbjct: 1258 REVSDLKRKSPSDLWKEDLAAFVEE 1282


>gi|10121857|gb|AAG13401.1|AF285155_1 topoisomerase II alpha-2 [Gallus gallus]
          Length = 1586

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 159/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 729  LTYNDFINKELVLFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKGAQLA 784

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 785  GSVAEMSSYH-HGEASLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 843

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 844  TMLSPLARLLFPPVDDNVLRFLYD-DNQRVEPEWYMPIIPMVLINGAEGIGTGWSCKIPN 902

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +++E       L+D  E            P  P+      + + +      G   + + 
Sbjct: 903  FDIRETVNNIRCLLDGKEPL----------PMLPSYKNFKGTIDEL------GPNQYVIS 946

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                + +       I +TE+P +       E++ E +     K  PL+ D ++   +   
Sbjct: 947  GEVSILDS----TTIEITELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTV 1002

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +   +     +     +  +  ++T    N  VL      + +      ILKE+   R
Sbjct: 1003 KFVVKMSEEKLAEAEAVGLHKVFKLQTNLTCNSMVLFDHVGFLKKYESPQDILKEFFELR 1062

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                  R  + +     +      +   I      +I+   + + +   V++ R   ++ 
Sbjct: 1063 LRYYGLRKEWLIGMLGAESAKLNNQARFILEKIDGKIVIENKPKKELIQVLIQRGYESDP 1122

Query: 427  QVDA 430
                
Sbjct: 1123 VKAW 1126


>gi|39980706|gb|AAR33047.1| gyrase A [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 101

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 57/101 (56%), Positives = 81/101 (80%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 101


>gi|164456292|dbj|BAF97649.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456302|dbj|BAF97654.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456308|dbj|BAF97657.1| DNA gyrase subunit A [Corynebacterium accolens]
 gi|164456314|dbj|BAF97660.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456318|dbj|BAF97662.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456328|dbj|BAF97667.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 78/112 (69%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|3024753|sp|Q64399|TOP2B_CRILO RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
 gi|2137065|pir||S59969 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) isoform beta -
            Chinese hamster
 gi|790988|emb|CAA60173.1| DNA topoisomerase (ATP-hydrolysing) [Cricetulus longicaudatus]
          Length = 1612

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/505 (17%), Positives = 180/505 (35%), Gaps = 35/505 (6%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 702  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 757

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 758  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 816

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 817  TMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 875

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 876  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 919

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 920  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 978

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 979  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1038

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1039 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVRA 1098

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLA--EKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                    +  +  + Q      +       +    L  S      +   E+ + ++   
Sbjct: 1099 WKEAQEKAAEEEDTQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKG 1158

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +  +R++          A +++
Sbjct: 1159 REVNDLKRKSPSDLWKEDLAAFVEE 1183


>gi|91093525|gb|ABE11584.1| ParC [Escherichia coli]
 gi|91093535|gb|ABE11589.1| ParC [Escherichia coli]
          Length = 105

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 58/104 (55%), Positives = 80/104 (76%), Gaps = 1/104 (0%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD++ Y+++V +AQPF  
Sbjct: 2   DGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSY 61

Query: 108 RYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDED 150
           RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L  + + 
Sbjct: 62  RYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQG 105


>gi|34328148|ref|NP_033435.2| DNA topoisomerase 2-beta [Mus musculus]
 gi|76363529|sp|Q64511|TOP2B_MOUSE RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
 gi|32451610|gb|AAH54541.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|54887373|gb|AAH41106.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|148688695|gb|EDL20642.1| topoisomerase (DNA) II beta [Mus musculus]
          Length = 1612

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 180/505 (35%), Gaps = 35/505 (6%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 702  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 757

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 758  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 816

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 817  TMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 875

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      +++  +            P  P       + + +      G+  + V 
Sbjct: 876  YDAREIVNNVRRMLEGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 919

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 920  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 978

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 979  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1038

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1039 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1098

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLA--EKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                    +  +  + Q      +       +    L  S      +   E+ + ++   
Sbjct: 1099 WKEAQEKAAEEEDSQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKG 1158

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +  +R++          A +++
Sbjct: 1159 REVNDLKRKSPSDLWKEDLAAFVEE 1183


>gi|1066004|dbj|BAA07236.1| typr II DNA topoisomerase beta isoform [Mus musculus]
          Length = 1612

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 180/505 (35%), Gaps = 35/505 (6%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 702  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 757

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 758  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 816

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 817  TMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 875

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      +++  +            P  P       + + +      G+  + V 
Sbjct: 876  YDAREIVNNVRRMLEGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 919

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 920  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 978

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 979  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1038

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1039 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1098

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLA--EKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                    +  +  + Q      +       +    L  S      +   E+ + ++   
Sbjct: 1099 WKEAQEKAAEEEDSQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKG 1158

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +  +R++          A +++
Sbjct: 1159 REVNDLKRKSPSDLWKEDLAAFVEE 1183


>gi|302895481|ref|XP_003046621.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
            77-13-4]
 gi|256727548|gb|EEU40908.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
            77-13-4]
          Length = 1677

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 158/379 (41%), Gaps = 25/379 (6%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K++S    +    + ++++    R+IP + DGFKP  R++++A  +  L  
Sbjct: 770  PGTYLDHSTKSISYSDFINRELILFSMADNM-RSIPSVLDGFKPGQRKVLYACFKRNLVK 828

Query: 69   GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K   + G V  +   H HG+ S+  +++ LAQ F        +   GNFG+    
Sbjct: 829  DK---KVVELSGYVSEQTAYH-HGEASLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLAG 884

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  AA+ RYT  R++  A  I   +DE  +  +   + +  EPV +    P +L NG  G
Sbjct: 885  GSDAASPRYTFTRLSPFARKIFSPMDEPNLQHQ-HEDGKKIEPVAYAPIIPMVLVNGADG 943

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +TSIP+++ ++I       +   +           G + P   ++   R    + 
Sbjct: 944  IGTGWSTSIPNYHPEDIVRNLKRRMGRLDEK--------DGEELPFETMMPWFRGWKGQP 995

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDI 301
               G   ++        E  R    I ++E+P +V       ++ ++I     P  ++D 
Sbjct: 996  EAAGPDRYKFNGIAQQNE--RNPNEITISELPIRVWTDDFKARLEKIISGNDGPAWIKDY 1053

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDG 359
            ++ +   V       +      +L E I     +  +   +  V    R  + +   ++ 
Sbjct: 1054 KEFNDHSVVHFEVMMDEKHTEKVLEEGILERFKLLKQVATSNLVAFDSRGQIRKYEKVED 1113

Query: 360  ILKEWLAHRREVLFRRSSF 378
            IL+E+  +R ++   R  +
Sbjct: 1114 ILEEYYHYRFDMYTERKKY 1132


>gi|326921999|ref|XP_003207240.1| PREDICTED: DNA topoisomerase 2-beta-like, partial [Meleagris
            gallopavo]
          Length = 1688

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 155/421 (36%), Gaps = 33/421 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 780  LTYNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 835

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 836  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIF 894

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 895  TMLSPLARLLFPSVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPN 953

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 954  YDTREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYVVS 997

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 998  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTEKTPALISDYKEYHTDTTVKFV 1056

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 1057 VKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLHY 1116

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1117 YSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKRDLIQMLVQRGYESDPVKA 1176

Query: 430  A 430
             
Sbjct: 1177 W 1177


>gi|149729823|ref|XP_001492165.1| PREDICTED: similar to DNA topoisomerase (ATP-hydrolysing) [Equus
            caballus]
          Length = 1630

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 180/505 (35%), Gaps = 35/505 (6%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 721  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 776

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 777  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 835

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 836  TMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 894

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      +++  +            P  P       + + +      G+  + V 
Sbjct: 895  YDAREIVNNVRRMLEGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 938

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 939  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 997

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 998  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1057

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1058 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1117

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLA--EKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                    +  +  + Q      +       +    L  S      +   E+ + ++   
Sbjct: 1118 WKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKG 1177

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +  +R++          A +++
Sbjct: 1178 REVNDLKRKSPSDLWKEDLAAFVEE 1202


>gi|68480866|ref|XP_715586.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|68480977|ref|XP_715530.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437155|gb|EAK96506.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437215|gb|EAK96565.1| DNA topoisomerase II [Candida albicans SC5314]
          Length = 1461

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 158/403 (39%), Gaps = 36/403 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  +  + +   + +  + +++S    R+IP + DGFKP  R++++   +  L  
Sbjct: 719  PGTHLDPEITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRS 777

Query: 69   GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++ G V      H HG+QS+  +++ LAQ F       ++   G+FG+    
Sbjct: 778  E---IKVAQLAGYVSENTGYH-HGEQSLVQTIIGLAQNFVGSNNINVLKPNGSFGSRAAG 833

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   +A RY    ++++   I   +D+    +    +E+  EP  +    P +L NG  G
Sbjct: 834  GKDFSAARYIFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPEWYLPVLPMILVNGAEG 892

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T+IPS+N              P+  +  +   + G +        +     +E 
Sbjct: 893  IGTGWSTNIPSYN--------------PKDLVTNIRRLMNGEELQEMTPWYKGWGGDLEP 938

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK-IAELIIAKRIPLLEDI 301
               G   F+V  R    +       + +TEIP +   + + E  ++     K  P ++D+
Sbjct: 939  M--GPQKFKVSGRIEQIDSNT----VEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDM 992

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDG 359
              E        +     +     L   +     + +   L   V     GR+ +   +  
Sbjct: 993  E-EHHTTSIRFVIKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLE 1051

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            I+K++   R E   +R  +    +  ++ +L         I E
Sbjct: 1052 IIKDFYYVRLEYYQKRKDYMTDNLQNQLLMLSEQARFIKMIIE 1094


>gi|26328987|dbj|BAC28232.1| unnamed protein product [Mus musculus]
          Length = 1028

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 157/424 (37%), Gaps = 39/424 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 193 LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 248

Query: 80  GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
           G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 249 GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 307

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
             ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 308 TMLSPLARLLFPPKDDHTLRFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 366

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            +V+E+      L+D  E            P  P+      + E +          + + 
Sbjct: 367 FDVREVVNNIRRLLDGEEPL----------PMLPSYKNFKGTIEELAS------NQYVIN 410

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
               + +       I ++E+P +       E++ E +     K   L+ D R+   +   
Sbjct: 411 GEVAILDS----TTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPSLITDYREYHTDTTV 466

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
             +         +     +  +  +++    N  VL      + +   +  IL+++   R
Sbjct: 467 KFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 526

Query: 369 REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            +    R  + +     +      +   I      +I+   + + +   V++ R   ++ 
Sbjct: 527 LKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELIKVLIQRGYDSDP 586

Query: 427 QVDA 430
               
Sbjct: 587 VKAW 590


>gi|17932925|emb|CAC84235.1| gyrase A [Stenotrophomonas maltophilia]
          Length = 100

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 60/99 (60%), Positives = 78/99 (78%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +       + KSARIVG+VIGK HPHGDQSVYD+LVRLAQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LNAHSNKPYFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           DSAAA RYTEARM+++A  ++  +D++ VDF+  Y+E++
Sbjct: 61  DSAAAMRYTEARMSRLAHELMADIDKETVDFQPNYDEKE 99


>gi|164604813|gb|ABY61967.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 80/105 (76%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD
Sbjct: 1   GVTPDKPHKKSARIVGDVMGKYHPHGDFAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P
Sbjct: 61  GAAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLP 105


>gi|303276424|ref|XP_003057506.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461858|gb|EEH59151.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1473

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/391 (17%), Positives = 148/391 (37%), Gaps = 34/391 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++     V     + +  + ++ + +  R+IP + DGFKP  R+++ +  +  L 
Sbjct: 692  EPGTFLDMTGDDVGYDDFVNKELILFSRADLM-RSIPSVVDGFKPSQRKVLFSCFKRKLK 750

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++ G V      H HG+ S+  ++V LAQ F       L+   G FG    
Sbjct: 751  SD---IKVAQLSGYVSEHSAYH-HGEASLASTIVGLAQDFVGSNNVNLLVPSGQFGTRLQ 806

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R+  +   I    D+  +D+    + +  EP  +    P +L NG  
Sbjct: 807  GGKDHASPRYIFTRLAPICRAIFPEADDALLDYI-NEDGQVIEPDYYLPILPLVLVNGAD 865

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +++ +    L+++ E                          S+ E
Sbjct: 866  GIGTGWSTSIPNYNPRDLTDNIRRLLNDEEPERM-------------HPWYRNFNGSLTE 912

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLL 298
                G   + +   + +         ++++E+P +   +   E +  ++        P +
Sbjct: 913  EIVKGEIRYHISGAYEIV----NETTLMISELPIRSWTTDYKEFLENMMNPKEKNATPFI 968

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMP 356
             D ++   +     +             E I     + ++   +        G + +   
Sbjct: 969  TDYKEHHTDTTVHFVVTMTPEKMAQAQKEGIEKKFKLSSKVSTSNMHCFDANGGIQKYSN 1028

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
             + I+K ++  R +   +R +  ++  +  +
Sbjct: 1029 PEEIMKAFVPLRLKAYEKRRTMLIRQAESEL 1059


>gi|161339335|gb|ABX64408.1| gyrase [Streptococcus suis]
 gi|164604811|gb|ABY61966.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 80/105 (76%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD
Sbjct: 1   GVTPDKPHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P
Sbjct: 61  GAAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLP 105


>gi|238652845|emb|CAR63882.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 49/103 (47%), Positives = 76/103 (73%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHG+ +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGNTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
           +DGDS AA RYTEA+M++++  +L+ ++++ VDF+  ++E   
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLK 103


>gi|296228227|ref|XP_002759705.1| PREDICTED: DNA topoisomerase 2-beta-like [Callithrix jacchus]
          Length = 1620

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 86/505 (17%), Positives = 180/505 (35%), Gaps = 35/505 (6%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 709  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 764

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 765  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 823

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 824  TMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 882

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 883  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 926

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 927  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 985

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 986  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1045

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1046 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1105

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLA--EKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                    +  +  + Q      +       +    L  S      +   E+ + ++   
Sbjct: 1106 WKEAQEKAAEEEDTQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKG 1165

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +  +R++          A +++
Sbjct: 1166 REVNDLKRKSPSDLWKEDLAAFVEE 1190


>gi|29165281|gb|AAO65581.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Kottbus]
          Length = 100

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 56/100 (56%), Positives = 78/100 (78%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 100


>gi|290995679|ref|XP_002680410.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284094031|gb|EFC47666.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1135

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 99/493 (20%), Positives = 196/493 (39%), Gaps = 47/493 (9%)

Query: 19   AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             V++   +    + ++      R+IP + DG KP  R+I+ A  +  L       K A++
Sbjct: 667  KVTITDFINNELILFSNQNNI-RSIPSIVDGLKPSQRKILFACLKRDLKDE---IKVAQL 722

Query: 79   VGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYT 132
             G V      H HG+QS+Y ++  +AQ F      PL+   G FG     GD AA+ RY 
Sbjct: 723  AGYVSEHSAYH-HGEQSLYGTITSMAQDFVGANNIPLLYPSGQFGTRLQGGDDAASARYI 781

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
              R+ ++  LI    D+  +D+++  +    EP  +    P LL NG  G+  G +TSIP
Sbjct: 782  YTRLNKLTRLIFLKEDDQILDYQE-EDGMIIEPKFYLPIIPMLLVNGAEGMGTGWSTSIP 840

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            S N  ++ ++   L+D+   +I  +         P+  +     +  +E    G+   + 
Sbjct: 841  SFNPIDLIDSLNILLDSNAENIGNV-------KLPSLDMWARGFKGKIEMNDSGKFISKG 893

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-LEDIRDESAEDVRI 311
              +    +    S    ++E+P           +  L+    I   + +   E++    I
Sbjct: 894  IFK---MKSRGDSIEFDISELPIGEWTENYKSHLQSLVKKGLIKSKITERNTENSVGFTI 950

Query: 312  VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGILKEWLAHRR 369
             +       DPD   ES      +E  F L+   +      + Q   ++ I+K++   R 
Sbjct: 951  AI------NDPDEFSESQLKKLKLEKSFSLSNMTVFSENFDIIQFSNVNDIIKQFYLVRL 1004

Query: 370  EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT----- 424
                +R S  M+ +++++ IL   +     I    + +    K K   +  F        
Sbjct: 1005 SYYHQRKSHLMKQLEKQIRILSNKVKFLNFITSNESNLNTFIKTKKENIPSFLTNVVGIV 1064

Query: 425  ------ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
                  E   + + ++ + SL    + +I  +L++   E +       S          +
Sbjct: 1065 VDPTTIEQSFNYLTDMNILSLTHEHKDRINKQLESAQQELQ-----QVSSDDPKLMWKRD 1119

Query: 479  IREVKEIFSKSTD 491
            ++ +++  +KS +
Sbjct: 1120 LKRLRDELTKSEN 1132


>gi|45382161|ref|NP_990122.1| DNA topoisomerase 2-alpha [Gallus gallus]
 gi|13959708|sp|O42130|TOP2A_CHICK RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|6714553|dbj|BAA22539.2| DNA topoisomeraseII_alpha [Gallus gallus]
          Length = 1553

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 159/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 694  LTYNDFINKELVLFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKGAQLA 749

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 750  GSVAEMSSYH-HGEASLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 808

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 809  TMLSPLARLLFPPVDDNVLRFLYD-DNQRVEPEWYMPIIPMVLINGAEGIGTGWSCKIPN 867

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +++E       L+D  E            P  P+      + + +      G   + + 
Sbjct: 868  FDIRETVNNIRCLLDGKEPL----------PMLPSYKNFKGTIDEL------GPNQYVIS 911

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                + +       I +TE+P +       E++ E +     K  PL+ D ++   +   
Sbjct: 912  GEVSILDS----TTIEITELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTV 967

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +   +     +     +  +  ++T    N  VL      + +      ILKE+   R
Sbjct: 968  KFVVKMSEEKLAEAEAVGLHKVFKLQTNLTCNSMVLFDHVGFLKKYESPQDILKEFFELR 1027

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                  R  + +     +      +   I      +I+   + + +   V++ R   ++ 
Sbjct: 1028 LRYYGLRKEWLIGMLGAESAKLNNQARFILEKIDGKIVIENKPKKELIQVLIQRGYESDP 1087

Query: 427  QVDA 430
                
Sbjct: 1088 VKAW 1091


>gi|288565|emb|CAA78821.1| DNA topoisomerase II [Homo sapiens]
          Length = 1031

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 86/506 (16%), Positives = 181/506 (35%), Gaps = 37/506 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 119 LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 174

Query: 80  GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
           G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 175 GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 233

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
             ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 234 TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 292

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 293 YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 336

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
               V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 337 GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 395

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                          +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 396 VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 455

Query: 372 LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
              R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 456 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 515

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--- 486
                + ++  + E      +  +        D         W+    ++ E+ +     
Sbjct: 516 W-KEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAK 574

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +  +R++          A +++
Sbjct: 575 GREVNDLKRKSPSDLWKEDLAAFVEE 600


>gi|3044112|gb|AAC13292.1| DNA gyrase subunit A [Moraxella catarrhalis]
          Length = 107

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 54/107 (50%), Positives = 77/107 (71%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+A
Sbjct: 1   NWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           AA RYTE RM ++A  +L  ++++       Y+  +  P V P+K P
Sbjct: 61  AAMRYTEVRMAKLAHELLADLEKETGRLGANYDGTEQIPAVMPTKIP 107


>gi|22953852|gb|AAM21723.1| topoisomerase IV subunit A [Legionella pneumophila]
          Length = 106

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 56/104 (53%), Positives = 77/104 (74%), Gaps = 1/104 (0%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
            + DG KPV RRI++AMSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQP
Sbjct: 1   SIADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQP 60

Query: 105 FVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGV 147
           F  RYP + GQGN+G+ D   S AA RYTEAR++  A+++L  +
Sbjct: 61  FSYRYPFVDGQGNWGSPDDPKSFAAMRYTEARLSLYADVLLGEL 104


>gi|157953085|ref|YP_001497977.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella virus
            NY2A]
 gi|155123312|gb|ABT15180.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella virus
            NY2A]
          Length = 1061

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 87/472 (18%), Positives = 177/472 (37%), Gaps = 49/472 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                 ++     V +   +++  + ++     ER+IP + DGFKP  R++I++  +  L 
Sbjct: 619  EPGNQLDHKKPEVPVPDFIDKELILFSRYD-LERSIPSVVDGFKPSQRKVIYSAFKRNLT 677

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A+  G V      H HG+ S+  ++V LAQ +        +  +G FG+   
Sbjct: 678  TD---VKVAQFSGYVAEHSAYH-HGEASLQGTIVNLAQDYVGSNNINWLLPEGQFGSRLQ 733

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   ++      +    D++ + +    + +  EP  +    P++L NG+S
Sbjct: 734  GGKDHASARYIYMKLNPQTRQVFVDTDDNLLKYMYD-DGDKIEPEYYVPVIPSILVNGSS 792

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IPS+N ++I +    L              I G D        +  +   +
Sbjct: 793  GIGTGWSTNIPSYNPKDIVDNVKRL--------------ISGEDLVEMKPWYKGFKG--K 836

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                  G +  +  +           IVV+E+P         E +  L+  K I    + 
Sbjct: 837  IMETSPGVYVTKGLY-----MPNGKTIVVSELPIGKWTQDYKEHLDGLLEKKIISDFREK 891

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDG 359
              ++     I                    +  +ET             G++ +      
Sbjct: 892  HSDTDVLFEIDFV-----------GNPNIDILKLETTIRSTNMHAFDPSGKIKKYDTPLD 940

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRR---VEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
            I++EW   R+++  +R ++ ++ +  R    +     +    N + II           +
Sbjct: 941  IIREWFGVRKDLYVKRKAYLLEDLTHRTNIAQNKHRFITMVNNDEIIINKKHESVISAEL 1000

Query: 417  MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
               +F   +++ D +LN+R+ SL      ++K E   L  E + +     + 
Sbjct: 1001 EKLKFYKVDDKYDYLLNMRISSLTLERAEELKRESVKLEKELDDLSKTTETD 1052


>gi|319827194|gb|ADV74814.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 52/116 (44%), Positives = 82/116 (70%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F   F+KSA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            G++DGD AAA RYTEAR++++A+ +LQ +D++ V F   +++ + EP V P+ FP
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIADYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|313799068|gb|ADR82153.1| topoisomerase IV subunit A [Mycoplasma sp. 1220]
          Length = 511

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 136/520 (26%), Positives = 244/520 (46%), Gaps = 25/520 (4%)

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AELIL  + ++ V+F   +++ + EP V PS FPNLL NGT+GIA+GMAT +P HN +EI
Sbjct: 1   AELILGELKKNPVNFVPNFDDSELEPAVLPSIFPNLLINGTTGIAIGMATEMPPHNFEEI 60

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR---GGFRVRARW 256
            +A +A + NP +S  +L   + GPDFPTGG I+   + I ES+  GR      ++ +++
Sbjct: 61  IDATIAKLQNPNLSFSQLCSIVKGPDFPTGG-IIYGTKGIEESFETGRTLKNKIQLFSKF 119

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +      +  I +TEIPY V KS L+  I  LI    +  + +I+D+S  +   ++   
Sbjct: 120 VI-TSDNKNKYIEITEIPYGVVKSDLVYSIDVLISQNEMDGVLEIKDQSDREGIKIVITL 178

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  +   +M  +F  + ++  +    N++     PQ++ L+ ++  ++ H  ++  +  
Sbjct: 179 EKDANEKSIMRYLFSKTKLQINYSY-NNMVIKNNSPQLLNLNNLITSYVEHISDIKTKTL 237

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED----KPKPVMVSRFSLTENQVDAIL 432
           ++ ++    R+EI+ G L      DEII +IR  +         +++ F  T+NQ  AI 
Sbjct: 238 TYDVEKHKLRLEIVLGFLKVTEITDEIIEVIRKSEGSKAGVIQDLMNIFGFTKNQATAIA 297

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            LRL  L K +  + K+E D L +E   I+SLL    +    +   ++E++  F      
Sbjct: 298 ELRLYKLSKTDYNEFKNEKDYLESEINYINSLLEDKDKFTFYLINLLKELRNEFPSP--- 354

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGD 549
             RRT   +         +  + E+  I V IS  G+I+ L    +   D S    K+ D
Sbjct: 355 --RRTQIVDREYNFDYDEKDLIKEEI-INVAISKFGYIKRLSQKVIESNDFSTYVLKDED 411

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN-----QDIVT 604
            L      +T D  L+ +  G    +P   +   +     I L   ++         ++ 
Sbjct: 412 YLTFYNQVNTMDTFLIFTNFGNYAIIPIYKIEECKWKDNGIHLSDFVDLQSGEVVVSVIE 471

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLK 643
              ++S   + + +  G        +  ++ T K  T + 
Sbjct: 472 VSDWNSNLFVTIATRNGIVKRTPIKDFEVSRTVKTYTAIS 511


>gi|149054149|gb|EDM05966.1| topoisomerase (DNA) 2 alpha [Rattus norvegicus]
          Length = 1528

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 692  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 747

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 748  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 806

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 807  TMLSPLARLLFPSKDDHTLRFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 865

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+E+      L+D  E            P  P+      + E +          + + 
Sbjct: 866  FDVREVVNNIRRLLDGEEPL----------PMLPSYKNYKGTIEELAS------NQYVIN 909

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I +TE+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 910  GEVAIL----NSTTIEITELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 965

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  IL+++   R
Sbjct: 966  KFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 1025

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +I+   + + +   V++ R   ++ 
Sbjct: 1026 LKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELIKVLIQRGYDSDP 1085

Query: 427  QVDA 430
                
Sbjct: 1086 VKAW 1089


>gi|319827196|gb|ADV74815.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 80/116 (68%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F   F+KSA+ VG V+G  HPHGD  +YD++VR++Q +  R  LI   GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSPIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            G++DGD AAA RYTEAR++++A  +LQ +D++ V F   +++ + EP V P+ FP
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|62087338|dbj|BAD92116.1| DNA topoisomerase II, beta isozyme variant [Homo sapiens]
          Length = 1009

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 86/506 (16%), Positives = 181/506 (35%), Gaps = 37/506 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 97  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 152

Query: 80  GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
           G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 153 GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 211

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
             ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 212 TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 270

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 271 YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 314

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
               V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 315 GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 373

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                          +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 374 VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 433

Query: 372 LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
              R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 434 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 493

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--- 486
                + ++  + E      +  +        D         W+    ++ E+ +     
Sbjct: 494 W-KEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAK 552

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +  +R++          A +++
Sbjct: 553 GREVNDLKRKSPSDLWKEDLAAFVEE 578


>gi|1174742|sp|P41516|TOP2A_RAT RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|587515|emb|CAA86496.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 691  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 746

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 747  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 805

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 806  TMLSPLARLLFPSKDDHTLRFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 864

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+E+      L+D  E            P  P+      + E +          + + 
Sbjct: 865  FDVREVVNNIRRLLDGEEPL----------PMLPSYKNYKGTIEELAS------NQYVIN 908

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I +TE+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 909  GEVAIL----NSTTIEITELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 964

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  IL+++   R
Sbjct: 965  KFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 1024

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +I+   + + +   V++ R   ++ 
Sbjct: 1025 LKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELIKVLIQRGYDSDP 1084

Query: 427  QVDA 430
                
Sbjct: 1085 VKAW 1088


>gi|47216863|emb|CAG11670.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1568

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 144/380 (37%), Gaps = 36/380 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            +S    + +  + ++ S   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 828  LSYNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCLKRN---DKREVKVAQLA 883

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       ++   G FG     G  AA+ RY  
Sbjct: 884  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNLNILQPLGQFGTRINGGKDAASPRYIF 942

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A+L+   VD + + F    + +  EP  +    P +L NG  GI  G A  IP+
Sbjct: 943  TMLSPLAKLLFPAVDSNLLKFLYD-DNQKVEPEWYIPIIPMVLVNGAEGIGTGWACKIPN 1001

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++V+EI      ++   E                      +  + ++  + LG+  + V 
Sbjct: 1002 YDVREIVNNINRMLSRQEPLQM--------------LPSYKGFKGVI--HELGQNQYLVS 1045

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---LIIAKRIPLLEDIRDESAEDVR 310
                V +       + +TE+P +       E + E       K   L+ D ++   +   
Sbjct: 1046 GEVSVIDKNT----VEITELPVRTWTQAYKESVLEPMLQGSDKTPALISDYKEYHTDTTV 1101

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL-DGILKEWLAHRR 369
              L   +           +  +  +++    N  V +    P+ +        +     +
Sbjct: 1102 KFLVRMSEEKLAQAEAAGLHKVFKLQSSLTCNSMVTACFHRPEHVLFDHMGCLKRYESVQ 1161

Query: 370  EVLFRRSSFRMQAIDRRVEI 389
            ++L      R+     R + 
Sbjct: 1162 DILKEFFELRLHYYKLRRDW 1181


>gi|38259192|ref|NP_071519.2| DNA topoisomerase 2-alpha [Rattus norvegicus]
 gi|57964|emb|CAA79611.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 691  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 746

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 747  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 805

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 806  TMLSPLARLLFPSKDDHTLRFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 864

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+E+      L+D  E            P  P+      + E +          + + 
Sbjct: 865  FDVREVVNNIRRLLDGEEPL----------PMLPSYKNYKGTIEELAS------NQYVIN 908

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I +TE+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 909  GEVAIL----NSTTIEITELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 964

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  IL+++   R
Sbjct: 965  KFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 1024

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +I+   + + +   V++ R   ++ 
Sbjct: 1025 LKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELIKVLIQRGYDSDP 1084

Query: 427  QVDA 430
                
Sbjct: 1085 VKAW 1088


>gi|319827190|gb|ADV74812.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 52/116 (44%), Positives = 81/116 (69%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F   F+KSA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            G++DGD AAA RYTEAR++++A  +LQ +D++ V F   +++ + EP V P+ FP
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|58258575|ref|XP_566700.1| DNA topoisomerase II [Cryptococcus neoformans var. neoformans JEC21]
 gi|134106673|ref|XP_778347.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50261050|gb|EAL23700.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57222837|gb|AAW40881.1| DNA topoisomerase II, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1272

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 155/404 (38%), Gaps = 38/404 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V+++ +   + +  + ++++    R+IP + DG KP  R+++    +  L 
Sbjct: 753  KPGTYLDHDVQSLPISDFVNKELILFSMADNI-RSIPSVADGLKPGQRKVLFGCFKRNLT 811

Query: 68   FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++ G V  K   H HG+ S+  ++V LAQ F       L+   G FG    
Sbjct: 812  ---KEIKVAQLAGYVSEKTAYH-HGEASLTSTIVGLAQNFVGSNNINLLDPNGQFGTRLA 867

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY    + ++   I    D+  +++    +    EP  F    P +L NG  
Sbjct: 868  GGKDAASARYIFTNLPRMTRAIFHPADDGLLNY-LVEDGMSIEPDYFMPTVPMVLINGAD 926

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IP++N  +I E    ++   E                         +  +E
Sbjct: 927  GIGTGWSTAIPNYNPVDIVENLRRMMRGEEPEKM--------------TPWFRGFKGFIE 972

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-----IIAKRIP 296
              R+ +  ++V               + +TE+P +       E + E+      + + I 
Sbjct: 973  --RIDQDKYKVSGIIE----KINDTTLEITELPIRRWTQDFKEMLEEMTTGTDKVPQTIK 1026

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
              E+   ++    R+ +  KN +       +  F L+         +     G++ +   
Sbjct: 1027 DYEEHHTDTTVHFRVHMTEKNLADAEKEGFDKRFKLT-TSLGTGNMVCFDLNGKIKKYAS 1085

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             + IL+E+   R E    R       ++R+ E L         I
Sbjct: 1086 PEEILEEFFHKRLEFYGHRKQHLADELNRQFERLSNQARFVHMI 1129


>gi|119584762|gb|EAW64358.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_b [Homo sapiens]
          Length = 1643

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 86/506 (16%), Positives = 181/506 (35%), Gaps = 37/506 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 709  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 764

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 765  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 823

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 824  TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 882

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 883  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 926

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 927  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 985

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 986  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1045

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1046 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1105

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--- 486
                 + ++  + E      +  +        D         W+    ++ E+ +     
Sbjct: 1106 W-KEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAK 1164

Query: 487  SKSTDLGRRRTTFCEVSRADKATLQQ 512
             +  +  +R++          A +++
Sbjct: 1165 GREVNDLKRKSPSDLWKEDLAAFVEE 1190


>gi|238652883|emb|CAX46373.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 104

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 50/104 (48%), Positives = 76/104 (73%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           +DGDS A  RYTEA+M++++  +L+ ++++ VDF+  ++E   E
Sbjct: 61  VDGDSPAVMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKE 104


>gi|171850789|emb|CAP11077.1| DNA gyrase subunit A [Clostridium difficile]
 gi|171850791|emb|CAP11078.1| DNA gyrase subunit A [Clostridium difficile]
 gi|171850793|emb|CAP11079.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 95

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 53/95 (55%), Positives = 74/95 (77%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
             L+ G GNFG++DGDS AA RYTEA+M++++  +
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLEL 95


>gi|313192242|emb|CBY05929.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 56/102 (54%), Positives = 77/102 (75%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
             +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   HVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+    
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGNKQ 102


>gi|241955060|ref|XP_002420251.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
 gi|223643592|emb|CAX42474.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
          Length = 1461

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 154/410 (37%), Gaps = 38/410 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  +  + +   + +  + +++S    R+IP + DGFKP  R++++   +  L  
Sbjct: 719  PGTHLDPEITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRS 777

Query: 69   GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++ G V      H HG+QS+  +++ LAQ F       ++   G+FG+    
Sbjct: 778  E---IKVAQLAGYVSENTGYH-HGEQSLVQTIIGLAQNFIGSNNINVLKPNGSFGSRAAG 833

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   +A RY    ++++   I   +D+    +    +E+  EP  +    P +L NG  G
Sbjct: 834  GKDFSAARYIFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPEWYLPVLPMILVNGAEG 892

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T+IPS+N              P+  +  +   + G +        +     +E 
Sbjct: 893  IGTGWSTNIPSYN--------------PKDLVANIRRLMNGEELQEMTPWYKGWGGDLEP 938

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK-IAELIIAKRIPLLEDI 301
               G   F+V  R    +       + +TEIP +   + + E  ++     K  P ++D+
Sbjct: 939  M--GPQKFKVSGRIEQIDSNT----VEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDM 992

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP----- 356
             +     +R V+   +  +   L +  +     + +    NM         +        
Sbjct: 993  EEHHTTSIRFVVKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEI 1052

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +       L + ++     +      +    E  + + +       +   
Sbjct: 1053 IKDFYYVRLEYYQKRKDYMTDNLQNQLLMLSEQARFIKMIIEKQLSVANK 1102


>gi|153945749|ref|NP_035753.2| DNA topoisomerase 2-alpha [Mus musculus]
 gi|148684229|gb|EDL16176.1| topoisomerase (DNA) II alpha [Mus musculus]
          Length = 1528

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 157/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 692  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 747

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 748  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 806

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 807  TMLSPLARLLFPPKDDHTLRFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 865

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+E+      L+D  E            P  P+      + E +          + + 
Sbjct: 866  FDVREVVNNIRRLLDGEEPL----------PMLPSYKNFKGTIEELAS------NQYVIN 909

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                + +       I ++E+P +       E++ E +     K   L+ D R+   +   
Sbjct: 910  GEVAILDS----TTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPSLITDYREYHTDTTV 965

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  +++    N  VL      + +   +  IL+++   R
Sbjct: 966  KFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 1025

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +I+   + + +   V++ R   ++ 
Sbjct: 1026 LKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELIKVLIQRGYDSDP 1085

Query: 427  QVDA 430
                
Sbjct: 1086 VKAW 1089


>gi|281341246|gb|EFB16830.1| hypothetical protein PANDA_016140 [Ailuropoda melanoleuca]
          Length = 1599

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 180/505 (35%), Gaps = 35/505 (6%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 691  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 746

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 747  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 805

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ ++ L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 806  TMLSSLSRLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 864

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 865  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 908

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 909  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 967

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 968  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1027

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1028 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1087

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLA--EKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                    +  +  + Q      +       +    L  S      +   E+ + ++   
Sbjct: 1088 WKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDSKG 1147

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +  +R++          A +++
Sbjct: 1148 REVNDLKRKSPSDLWKEDLAAFVEE 1172


>gi|73966011|ref|XP_863082.1| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 3
            [Canis familiaris]
          Length = 1533

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 694  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 749

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 750  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 808

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 809  TMLSPLARLLFPPKDDQTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 867

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +++E+      L+D  E            P  P+      + E +          + + 
Sbjct: 868  FDIREVVNNIRRLMDGEEPL----------PMLPSYKNFRGTIEELAP------NQYVIS 911

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 912  GEVAIL----NSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 967

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  IL+++   R
Sbjct: 968  KFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 1027

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 1028 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1087

Query: 427  QVDA 430
                
Sbjct: 1088 VKAW 1091


>gi|297287019|ref|XP_001092092.2| PREDICTED: DNA topoisomerase 2-beta [Macaca mulatta]
          Length = 1621

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 86/506 (16%), Positives = 181/506 (35%), Gaps = 37/506 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 709  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 764

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 765  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 823

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 824  TMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 882

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 883  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 926

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 927  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 985

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 986  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1045

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1046 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1105

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--- 486
                 + ++  + E      +  +        D         W+    ++ E+ +     
Sbjct: 1106 W-KEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAK 1164

Query: 487  SKSTDLGRRRTTFCEVSRADKATLQQ 512
             +  +  +R++          A +++
Sbjct: 1165 GREVNDLKRKSPSDLWKEDLAAFVEE 1190


>gi|73966009|ref|XP_537646.2| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 1
            [Canis familiaris]
          Length = 1532

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 693  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 748

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 749  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 807

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 808  TMLSPLARLLFPPKDDQTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 866

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +++E+      L+D  E            P  P+      + E +          + + 
Sbjct: 867  FDIREVVNNIRRLMDGEEPL----------PMLPSYKNFRGTIEELAP------NQYVIS 910

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 911  GEVAIL----NSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 966

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  IL+++   R
Sbjct: 967  KFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 1026

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 1027 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1086

Query: 427  QVDA 430
                
Sbjct: 1087 VKAW 1090


>gi|238652841|emb|CAR63880.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 49/103 (47%), Positives = 75/103 (72%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+ Q F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMEQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
           +DGDS AA RYTEA+M++++  +L+ ++++ VDF+  ++E   
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLK 103


>gi|119584763|gb|EAW64359.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_c [Homo sapiens]
          Length = 1626

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 86/506 (16%), Positives = 181/506 (35%), Gaps = 37/506 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 714  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 769

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 770  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 828

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 829  TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 887

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 888  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 931

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 932  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 990

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 991  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1050

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1051 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1110

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--- 486
                 + ++  + E      +  +        D         W+    ++ E+ +     
Sbjct: 1111 W-KEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAK 1169

Query: 487  SKSTDLGRRRTTFCEVSRADKATLQQ 512
             +  +  +R++          A +++
Sbjct: 1170 GREVNDLKRKSPSDLWKEDLAAFVEE 1195


>gi|5739485|gb|AAD50498.1|AF174426_2 DNA topoisomerase IV ParC subunit [Acholeplasma laidlawii]
          Length = 123

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 58/115 (50%), Positives = 82/115 (71%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  +EE ++ V L   +  R+  Y+   I++RA+PD RDG KPV RRI++AM +MGL F 
Sbjct: 9   DKFIEEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFN 68

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            ++KKSARI GEV+GK HPHGD S+Y+++VR++Q F  R PL+   GN G+IDGD
Sbjct: 69  KSYKKSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDGD 123


>gi|332215374|ref|XP_003256818.1| PREDICTED: DNA topoisomerase 2-beta-like [Nomascus leucogenys]
          Length = 1621

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 86/506 (16%), Positives = 181/506 (35%), Gaps = 37/506 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 709  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 764

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 765  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 823

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 824  TMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 882

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 883  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 926

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 927  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 985

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 986  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1045

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1046 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1105

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--- 486
                 + ++  + E      +  +        D         W+    ++ E+ +     
Sbjct: 1106 W-KEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAK 1164

Query: 487  SKSTDLGRRRTTFCEVSRADKATLQQ 512
             +  +  +R++          A +++
Sbjct: 1165 GREVNDLKRKSPSDLWKEDLAAFVEE 1190


>gi|301782147|ref|XP_002926491.1| PREDICTED: DNA topoisomerase 2-beta-like [Ailuropoda melanoleuca]
          Length = 1608

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 180/505 (35%), Gaps = 35/505 (6%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 700  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 755

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 756  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 814

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ ++ L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 815  TMLSSLSRLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 873

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 874  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 917

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 918  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 976

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 977  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1036

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1037 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1096

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLA--EKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                    +  +  + Q      +       +    L  S      +   E+ + ++   
Sbjct: 1097 WKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDSKG 1156

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +  +R++          A +++
Sbjct: 1157 REVNDLKRKSPSDLWKEDLAAFVEE 1181


>gi|20141946|sp|Q02880|TOP2B_HUMAN RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
          Length = 1626

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 86/506 (16%), Positives = 181/506 (35%), Gaps = 37/506 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 714  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 769

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 770  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 828

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 829  TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 887

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 888  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 931

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 932  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 990

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 991  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1050

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1051 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1110

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--- 486
                 + ++  + E      +  +        D         W+    ++ E+ +     
Sbjct: 1111 W-KEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAK 1169

Query: 487  SKSTDLGRRRTTFCEVSRADKATLQQ 512
             +  +  +R++          A +++
Sbjct: 1170 GREVNDLKRKSPSDLWKEDLAAFVEE 1195


>gi|313192284|emb|CBY05950.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 81/103 (78%), Gaps = 1/103 (0%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++A   +G+D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGN
Sbjct: 4   VYAC-VLGMDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGN 62

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           FG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 63  FGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 105


>gi|144225422|emb|CAM84042.1| DNA gyrase B [Legionella dresdenensis]
          Length = 100

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 58/100 (58%), Positives = 78/100 (78%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD AAA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDMAAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
           E RM++VA  +L  ++++ VDF   Y+E +  P+V PS+ 
Sbjct: 61  EVRMSKVAHALLADLEKETVDFTPNYDETEFAPIVLPSRV 100


>gi|19913408|ref|NP_001059.2| DNA topoisomerase 2-beta [Homo sapiens]
 gi|119584761|gb|EAW64357.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_a [Homo sapiens]
 gi|162317664|gb|AAI56331.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
 gi|162318196|gb|AAI57119.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
          Length = 1621

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 86/506 (16%), Positives = 181/506 (35%), Gaps = 37/506 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 709  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 764

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 765  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 823

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 824  TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 882

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 883  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 926

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 927  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 985

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 986  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1045

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1046 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1105

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--- 486
                 + ++  + E      +  +        D         W+    ++ E+ +     
Sbjct: 1106 W-KEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAK 1164

Query: 487  SKSTDLGRRRTTFCEVSRADKATLQQ 512
             +  +  +R++          A +++
Sbjct: 1165 GREVNDLKRKSPSDLWKEDLAAFVEE 1190


>gi|291045133|ref|NP_001094328.1| topoisomerase II beta [Rattus norvegicus]
 gi|109945583|dbj|BAE96971.1| DNA topoisomerase IIbeta [Rattus norvegicus]
          Length = 1614

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 156/421 (37%), Gaps = 33/421 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 702  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 757

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 758  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 816

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 817  TMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 875

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      +++  +            P  P       + + +      G+  + V 
Sbjct: 876  YDAREIVNNVRRMLEGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 919

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 920  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 978

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 979  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1038

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1039 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1098

Query: 430  A 430
             
Sbjct: 1099 W 1099


>gi|37231|emb|CAA48197.1| DNA topoisomerase II [Homo sapiens]
          Length = 1621

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 86/506 (16%), Positives = 181/506 (35%), Gaps = 37/506 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 709  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 764

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 765  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 823

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 824  TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 882

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 883  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 926

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 927  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 985

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 986  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1045

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1046 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1105

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--- 486
                 + ++  + E      +  +        D         W+    ++ E+ +     
Sbjct: 1106 W-KEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAK 1164

Query: 487  SKSTDLGRRRTTFCEVSRADKATLQQ 512
             +  +  +R++          A +++
Sbjct: 1165 GREVNDLKRKSPSDLWKEDLAAFVEE 1190


>gi|332816287|ref|XP_516332.3| PREDICTED: DNA topoisomerase 2-beta [Pan troglodytes]
          Length = 1621

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 86/506 (16%), Positives = 181/506 (35%), Gaps = 37/506 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 709  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 764

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 765  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 823

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 824  TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 882

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 883  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 926

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 927  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 985

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 986  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1045

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1046 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1105

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--- 486
                 + ++  + E      +  +        D         W+    ++ E+ +     
Sbjct: 1106 W-KEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAK 1164

Query: 487  SKSTDLGRRRTTFCEVSRADKATLQQ 512
             +  +  +R++          A +++
Sbjct: 1165 GREVNDLKRKSPSDLWKEDLAAFVEE 1190


>gi|29165273|gb|AAO65577.1| DNA gyrase [Salmonella enterica subsp. enterica serovar
           Oranienburg]
          Length = 100

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 57/100 (57%), Positives = 79/100 (79%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 100


>gi|255076711|ref|XP_002502027.1| predicted protein [Micromonas sp. RCC299]
 gi|226517292|gb|ACO63285.1| predicted protein [Micromonas sp. RCC299]
          Length = 1459

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 133/352 (37%), Gaps = 32/352 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++     V     + +  + ++ + +  R+IP + DGFKP  R+++ +  +  L 
Sbjct: 692  EPGTYLDMTGDDVRYDDFINKELILFSRADLM-RSIPSVVDGFKPSQRKVLFSCFKRKLK 750

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++ G V      H HG+ S+  ++V LAQ F       L+   G FG    
Sbjct: 751  SD---IKVAQLSGYVSEHSAYH-HGEASLASTIVGLAQDFVGSNNVNLLVPSGQFGTRLQ 806

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R+  +  +I    D+  +D+ D  + +  EP  +    P +L NG  
Sbjct: 807  GGKDHASPRYIFTRLAPICRVIFPECDDALLDYLDE-DGQVIEPEHYLPILPLVLVNGAD 865

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP+ N ++I      ++D      ++  E +              + +I E
Sbjct: 866  GIGTGWSTSIPNFNPRDIVANIRRILD------DECTERMH-------PWYRNFKGTIEE 912

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP---YQVQKSRLIEKIAELIIAKRIPLL 298
                G   + +  ++ + +       +V+TE+P   +       +E +         P +
Sbjct: 913  EIVKGEIRYNITGKYEIVDE----TTLVITELPLRSWTTDYKDFLENMLSPKEKNAQPFI 968

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
             D ++   +     +             + I     +  +   +       +
Sbjct: 969  TDYKEHHTDTTVHFIVTMTPENMAKAQKDGIEKKFKLCAKVSTSNMHAFDEK 1020


>gi|294657090|ref|XP_459406.2| DEHA2E01738p [Debaryomyces hansenii CBS767]
 gi|199432439|emb|CAG87617.2| DEHA2E01738p [Debaryomyces hansenii]
          Length = 1411

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/407 (19%), Positives = 153/407 (37%), Gaps = 35/407 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +++ + +   + +  + ++++    R+IP + DGFKP  R++++   +  L 
Sbjct: 702  EPGTHLDPDLEEIPISDFINKELILFSMADNV-RSIPSVLDGFKPGQRKVLYGCFKRNLK 760

Query: 68   FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K  ++ G V      H HG+QS+  +++ LAQ F       ++   G+FG+   
Sbjct: 761  SE---IKVNQLAGYVSENTGYH-HGEQSLVQTIIGLAQDFIGSNNLNILKPNGSFGSRAA 816

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   +A RY    + ++   I   +D     +    +E+  EP  +    P LL NG+ 
Sbjct: 817  GGKDFSAPRYIFTEINEITRKIFNPLDNALYKYVQD-DEQTVEPEWYLPVLPMLLVNGSE 875

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T++P  N  +I      L              + G +           E   E
Sbjct: 876  GIGTGWSTNVPPFNPTDIVNNIKKL--------------MNGEEMNEMSPWYRGWEG--E 919

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK-IAELIIAKRIPLLED 300
                G+  FRV  R    +       + +TEIP +   + + E  +  L   K  P ++D
Sbjct: 920  IVANGKDRFRVIGRIEQTDE----TEVEITEIPVKTWTNNMKEFLLNGLGTEKVKPWIKD 975

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            + ++   ++R V+      +   L +  +   + + +    NM         ++   +  
Sbjct: 976  MEEQHGMNIRFVVKLSADEMAKSLKVGLLERFNLISSVSLTNMVAFDPMG--KIKKYESP 1033

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            L+         L      +    D     L  L      I  II   
Sbjct: 1034 LEIMRDFYYVRLEYYQRRKDHITDEMQHQLTKLSEQARFIKLIIDKE 1080


>gi|301779127|ref|XP_002924981.1| PREDICTED: DNA topoisomerase 2-alpha-like [Ailuropoda melanoleuca]
          Length = 1533

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 693  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 748

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 749  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 807

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 808  TMLSPLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 866

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +++E+      L+D  E            P  P+      + E +          + + 
Sbjct: 867  FDIREVVNNIRRLMDGEEPL----------PMLPSYKNFKGTIEELAP------NQYVIS 910

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 911  GEVAIL----NSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 966

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  IL+++   R
Sbjct: 967  KFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 1026

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 1027 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1086

Query: 427  QVDA 430
                
Sbjct: 1087 VKAW 1090


>gi|327275489|ref|XP_003222506.1| PREDICTED: DNA topoisomerase 2-alpha-like [Anolis carolinensis]
          Length = 1559

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/421 (17%), Positives = 158/421 (37%), Gaps = 33/421 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 696  LTYNDFINKELVLFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 751

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 752  GSVAEMSSYH-HGETSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 810

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L    +D++ + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 811  TMLSPLARLAFPVLDDNVLKFLFD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 869

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++V+E+      ++D  E            P  P       + +S+      G+  + V 
Sbjct: 870  YDVREVVNNIRRMLDGDEPL----------PMMPNYKNFKGTIDSV------GQNQYVVN 913

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                + +        +      QV K +++E +      K  PL+ D ++   +     +
Sbjct: 914  GEVSIIDSTTIEISELPVRTWTQVYKEQVLEPMLN-GTEKTPPLITDYKEYHTDTTVRFV 972

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
               +     +     +  +  +++       VL      + +    + IL+E+   R   
Sbjct: 973  IKMSEQKLAEAEAAGLHKVFKLQSSLACPNMVLFDHIGCLKKYETAEDILREFYELRLRY 1032

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I+   + + +   V++ R   ++    
Sbjct: 1033 YSLRKDWLVGMLGAESAKLNNQARFILEKIEGKIVIENKPKKELIKVLIQRGYDSDPVKK 1092

Query: 430  A 430
             
Sbjct: 1093 W 1093


>gi|148222806|ref|NP_001082502.1| topoisomerase (DNA) II alpha 170kDa [Xenopus laevis]
 gi|47939759|gb|AAH72193.1| LOC398512 protein [Xenopus laevis]
          Length = 1579

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 159/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 691  LTFNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 746

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 747  GSVAEMSAYH-HGEISLMMTIINLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIF 805

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   +D++ + F    + +  EP  +    P +L NG  GI  G +  +P+
Sbjct: 806  TMLSPLARLLFPALDDNVLKFMYD-DNQKVEPEWYIPIIPMVLVNGAEGIGTGWSCKLPN 864

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  E          + P +     +            LG   F + 
Sbjct: 865  YDTREIVNNIRRMLDGDEPQQ-------MLPSYKNFKGV---------IQELGPNQFILN 908

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                V +       I ++E+P +       E++ E +     K  PL+ D ++   +   
Sbjct: 909  GEVSVLDS----TTIEISELPARTWTQNYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTV 964

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              L         +     +  +  ++     N  VL      + +   +  IL+E+   R
Sbjct: 965  RFLVKMTEQKLAEAEAAGLHKVFKLQASLTCNSMVLFDHVGCLRKYETVLDILREFFDLR 1024

Query: 369  REVLFRRSSFR--MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  +   M   +      +   I      +I+   + + +   ++V R   ++ 
Sbjct: 1025 VKYYSLRKDWLVGMLTAEASKLSNQARFILEKIEGKIVIENKPKKELIQMLVQRGYDSDP 1084

Query: 427  QVDA 430
                
Sbjct: 1085 VKTW 1088


>gi|164456320|dbj|BAF97663.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 78/112 (69%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|242062820|ref|XP_002452699.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
 gi|241932530|gb|EES05675.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
          Length = 1452

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 73/403 (18%), Positives = 152/403 (37%), Gaps = 32/403 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T +++  K V     + +  + ++++   +R+IP + DG KP  R+I+    +     
Sbjct: 659  PGTYIDQQEKRVRYSDFINKELILFSMAD-LQRSIPSMVDGLKPGQRKILFCSFKRNFVK 717

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
             A   K A+  G V      H HG+QS+  +++ +AQ F       L+   G FG     
Sbjct: 718  EA---KVAQFSGYVSEHSAYH-HGEQSLASTIIGMAQNFVGSNNINLMFPGGQFGTRAQG 773

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  AA+ RY   +++ +   I    D+  +++    + +  EP  +    P +L NG+ G
Sbjct: 774  GKDAASPRYIFTKLSHITRSIFPKDDDILLNY-LNEDGQSIEPTWYMPILPMVLVNGSEG 832

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T IP++N ++I      L++                            +  +E 
Sbjct: 833  IGTGWSTFIPNYNPRDIVANLRRLLNEESTVPMHP--------------WYRGFKGSIEK 878

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---IIAKRIPLLE 299
                +          + EV   +  + +TE+P +       E +  L       ++P +E
Sbjct: 879  TVNTKVVGSTYTVTGIIEV-VDNSRLRITELPIRRWTGDYKEFLESLGPDKNKDKVPFIE 937

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPL 357
            D+  +   +   +    +         E +     + T    +   L      + +    
Sbjct: 938  DVTAQGDNEDIYIEIQLSEGNMNIAKEEGLVKKFKLTTTIGTSNMHLFDSNGKIRKYDTP 997

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            + IL+E+   R E   +R    ++ I   ++ L+  +     +
Sbjct: 998  EQILEEFFQLRLEFYVKRKEALLKNIKLELKKLENKVRFIRCV 1040


>gi|3869382|gb|AAC77432.1| DNA topoisomerase II beta [Homo sapiens]
          Length = 1598

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 86/506 (16%), Positives = 181/506 (35%), Gaps = 37/506 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 686  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 741

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 742  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 800

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 801  TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 859

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 860  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 903

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 904  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVNSV 962

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 963  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1022

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1023 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1082

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--- 486
                 + ++  + E      +  +        D         W+    ++ E+ +     
Sbjct: 1083 W-KEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAK 1141

Query: 487  SKSTDLGRRRTTFCEVSRADKATLQQ 512
             +  +  +R++          A +++
Sbjct: 1142 GREVNDLKRKSPSDLWKEDLAAFVEE 1167


>gi|126308150|ref|XP_001369978.1| PREDICTED: similar to DNA topoisomerase II (EC 5.99.1.3) [Monodelphis
            domestica]
          Length = 1548

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/421 (17%), Positives = 152/421 (36%), Gaps = 33/421 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 694  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 749

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 750  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 808

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 809  TMLSPLARLLFPAKDDQTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 867

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+E+      L+D  E            P  P+      + + +          + + 
Sbjct: 868  FDVREVVNNIRRLMDGEEPL----------PMLPSYKNFKGTIDELAP------NQYVIS 911

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                +          +      QV K +++E +      K  PL+ D R+   +     +
Sbjct: 912  GEVSIINSTTIEISELPVRTWTQVYKEQVLEPMLN-GTDKTPPLITDYREYHTDTTVKFI 970

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +      IL+++   R + 
Sbjct: 971  VKMTEEKLAQAEHAGLHKVFKLQTNLTCNSMVLFDHVGCLKKYDTALDILRDFFDLRLKY 1030

Query: 372  LFRRSSFR--MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  +   M   +      +   I      +I+   + + +   V++ R   ++    
Sbjct: 1031 YGLRKEWLTGMLGAESAKLNNQARFILEKIEGKIVIENKPKKELIKVLIQRGYDSDPVKA 1090

Query: 430  A 430
             
Sbjct: 1091 W 1091


>gi|28277299|gb|AAH44276.1| LOC398512 protein [Xenopus laevis]
          Length = 1132

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 691  LTFNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 746

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 747  GSVAEMSAYH-HGEISLMMTIINLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIF 805

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   +D++ + F    + +  EP  +    P +L NG  GI  G +  +P+
Sbjct: 806  TMLSPLARLLFPALDDNVLKFMYD-DNQKVEPEWYIPIIPMVLVNGAEGIGTGWSCKLPN 864

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  E                   ++   +        LG   F + 
Sbjct: 865  YDTREIVNNIRRMLDGDEPQ----------------QMLPSYKNFKGVIQELGPNQFILN 908

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                V +       I ++E+P +       E++ E +     K  PL+ D ++   +   
Sbjct: 909  GEVSVLDS----TTIEISELPARTWTQNYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTV 964

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              L         +     +  +  ++     N  VL      + +   +  IL+E+   R
Sbjct: 965  RFLVKMTEQKLAEAEAAGLHKVFKLQASLTCNSMVLFDHVGCLRKYETVLDILREFFDLR 1024

Query: 369  REVLFRRSSFR--MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  +   M   +      +   I      +I+   + + +   ++V R   ++ 
Sbjct: 1025 VKYYSLRKDWLVGMLTAEASKLSNQARFILEKIEGKIVIENKPKKELIQMLVQRGYDSDP 1084

Query: 427  QVDA 430
                
Sbjct: 1085 VKTW 1088


>gi|149639393|ref|XP_001507216.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase II,
            beta isozyme) [Ornithorhynchus anatinus]
          Length = 1923

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 179/505 (35%), Gaps = 35/505 (6%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 1017 LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCCKRN---DRREVKVAQLA 1072

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 1073 GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 1131

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 1132 TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 1190

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 1191 YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFRGTIQEL------GQNQYAVS 1234

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 1235 GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 1293

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 1294 VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLNY 1353

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + M     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1354 YSLRKEWLMGMLGAESTKLNNQARFILEKIQGKITIENRSKRDLIQMLVQRGYESDPVKA 1413

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ--QWNQIACEIREVKEIFS 487
                    +     + Q      +         + + +        +   E+ + ++   
Sbjct: 1414 WKEAQEKAAEEDETQNQHDDSSSDSGTTTGPDFNYILNMSLWCLTKEKVEELIKQRDAKG 1473

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +  +R++          A +++
Sbjct: 1474 RELNDLKRKSPSDLWKEDLAAFVEE 1498


>gi|2909393|emb|CAA76313.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 157/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 692  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 747

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 748  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 806

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +  L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 807  TMLSPLTRLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 865

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +++E+      L+D  E            P  P+      + E +          + + 
Sbjct: 866  FDIREVVNNIRRLLDGEEPL----------PMLPSYKNFKGTIEELAS------NQYVIN 909

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 910  GEVAIL----NSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 965

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  ILK++   R
Sbjct: 966  KFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILKDFFELR 1025

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 1026 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1085

Query: 427  QVDA 430
                
Sbjct: 1086 VKAW 1089


>gi|2909391|emb|CAA76312.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 75/424 (17%), Positives = 156/424 (36%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 692  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 747

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 748  GSVGEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 806

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +  L+    D+  + F    + +  EP  +    P +L NG  GI  G +   P+
Sbjct: 807  TMLSPLTRLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKTPN 865

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +++E+      L+D  E            P  P+      + E +          + + 
Sbjct: 866  FDIREVVNNIRRLLDGEEPL----------PMLPSYKNFKGTIEELAS------NQYVIN 909

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 910  GEVAIL----NSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 965

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  ILK++   R
Sbjct: 966  KFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILKDFFELR 1025

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 1026 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1085

Query: 427  QVDA 430
                
Sbjct: 1086 VKAW 1089


>gi|1174741|sp|P41515|TOP2A_CRIGR RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|191218|gb|AAA37023.1| DNA topoisomerase II [Cricetulus griseus]
          Length = 1526

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 157/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 692  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 747

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 748  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 806

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +  L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 807  TMLSPLTRLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 865

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +++E+      L+D  E            P  P+      + E +          + + 
Sbjct: 866  FDIREVVNNIRRLLDGEEPL----------PMLPSYKNFKGTIEELAS------NQYVIN 909

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 910  GEVAIL----NSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 965

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  ILK++   R
Sbjct: 966  KFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILKDFFELR 1025

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 1026 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1085

Query: 427  QVDA 430
                
Sbjct: 1086 VKAW 1089


>gi|86438844|emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]
          Length = 1467

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 142/377 (37%), Gaps = 30/377 (7%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                +++  K +     + +  + ++++   +R+IP + DG KP  R+I+ +  +    
Sbjct: 631 EPGVHLDQKEKLIKYSDFVHKELIQFSMAD-LQRSIPSMVDGLKPGQRKILFSSFKRNFV 689

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
             A   K A+  G V      H HG+QS+  +++ +AQ F       L+   G FG    
Sbjct: 690 KEA---KVAQFSGYVSEHSAYH-HGEQSLASTIIGMAQDFVGSNNINLLQPNGQFGTRNL 745

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY   R++ +   +    D+  +D+    + +  EP  +    P +L NG+ 
Sbjct: 746 GGKDHASARYIYTRLSPITRFLFSKDDDRLLDY-LNEDGQSIEPTWYVPIIPTVLVNGSE 804

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GI  G ++ IP++N ++I      L+D                  P          +I +
Sbjct: 805 GIGTGWSSYIPNYNPRDIVANVRRLLDGD-------------AMVPMDPWYRGFTGTIEK 851

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR-LIEKIAELIIAKRIPLLED 300
           + +     +       +EEV   S  I    I    Q  +  +E I+E     + P +E 
Sbjct: 852 TVKESGVSYTACGI--IEEVSETSLRISELPIRRWTQDYKEFLESISEGNDKAKDPFIEG 909

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLD 358
               S      ++             E +     + T    +   L   +  + +    +
Sbjct: 910 FTQHSDHSTVDIIVHLREEKLMAAKQEGLLKKFKLTTSISTSNMHLFDRKGVIKKYDTPE 969

Query: 359 GILKEWLAHRREVLFRR 375
            IL+++   R E   +R
Sbjct: 970 QILEDFFHLRLEFYEKR 986


>gi|164456324|dbj|BAF97665.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 78/112 (69%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y++LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYETLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|93278246|gb|ABF06588.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 98

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/98 (64%), Positives = 81/98 (82%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ L    A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLNLTSKVAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG++DGDSAAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSVDGDSAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|255729204|ref|XP_002549527.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
 gi|240132596|gb|EER32153.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
          Length = 1398

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/390 (18%), Positives = 150/390 (38%), Gaps = 40/390 (10%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  +  + +   + +  + +++S    R+IP + DG KP  R++++   +  L  
Sbjct: 798  PGTHLDPEINEIPISDFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLYGCIKKKLKS 856

Query: 69   GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++ G V      H HG+QS+  +++ LAQ F       ++   G+FG+    
Sbjct: 857  E---IKVAQLAGYVSENTGYH-HGEQSLVQTIIGLAQNFVGSNNINILKPNGSFGSRAAG 912

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANG 179
            G   +A RY    + ++   I   +D    D    Y   +E+  EP  +    P +L NG
Sbjct: 913  GKDFSAARYIFTELNEITRKIFNPLD----DPLYNYVQDDEQTVEPEWYLPVLPMILVNG 968

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
              GI  G +T+IPS+N              P+  +  +   + G +        +  +  
Sbjct: 969  AEGIGTGWSTNIPSYN--------------PKDLVANIKRLMNGEELQEMTPWYKGWDG- 1013

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +  + G   +++  R        G   + +TE+P +V  +   E +      ++ P   
Sbjct: 1014 -DIEQSGPQKYKITGRIE----QVGDNEVDITELPVKVWTNNYKEFLLAGFGTEKTPAWI 1068

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPL 357
               +E        +     +     L   +     + +   L   V      R+ +   +
Sbjct: 1069 KDMEEHHTTSIKFVVKLTDAEMQKSLRMGLMERFKLISSLSLGNMVAFDSMGRIKKYTDV 1128

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
              ILKE+   R E   +R S+ +  +   +
Sbjct: 1129 LEILKEFYYLRLEYYEKRKSYMVDKLQSEL 1158


>gi|194676107|ref|XP_001254458.2| PREDICTED: DNA topoisomerase II, alpha isozyme [Bos taurus]
 gi|297487046|ref|XP_002696055.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Bos taurus]
 gi|296476435|gb|DAA18550.1| topoisomerase (DNA) II alpha 170kDa [Bos taurus]
          Length = 1338

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 658  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 713

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 714  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 772

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 773  TMLSPLARLLFPAKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 831

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+E+      L+D  E            P  P+      + E +          + + 
Sbjct: 832  FDVREVVNNIRRLMDGEEPL----------PMLPSYKNFKGTVEELAP------NQYVIS 875

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 876  GEVAIL----NSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 931

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  IL+++   R
Sbjct: 932  KFVVKMTEEKLAEAERAGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 991

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 992  LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1051

Query: 427  QVDA 430
                
Sbjct: 1052 VKAW 1055


>gi|47523094|ref|NP_999049.1| DNA topoisomerase 2-alpha [Sus scrofa]
 gi|6094498|sp|O46374|TOP2A_PIG RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|2668414|dbj|BAA23778.1| topoisomersae II [Sus scrofa]
          Length = 1533

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 693  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 748

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 749  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 807

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 808  TMLSPLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 866

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+E+      L+D  E            P  P+      + E +          + + 
Sbjct: 867  FDVREVVNNIRLLMDGEEPL----------PMLPSYKNFKGTIEELAP------NQYVIS 910

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 911  GEVAIL----NSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 966

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  IL+++   R
Sbjct: 967  KFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 1026

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 1027 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1086

Query: 427  QVDA 430
                
Sbjct: 1087 VKAW 1090


>gi|149584135|ref|XP_001519680.1| PREDICTED: similar to DNA topoisomerase II [Ornithorhynchus anatinus]
          Length = 1746

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 154/421 (36%), Gaps = 33/421 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++               K A++ 
Sbjct: 721  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFRRN---DKREVKVAQLA 776

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 777  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNVNLLQPIGQFGTRLHGGKDSASPRYIF 835

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D++ + F    + +  EP  +    P +L NG  GI  G +  +P+
Sbjct: 836  TMLSPLARLLFPVKDDNTLKFLYD-DNQRVEPEWYIPIVPMVLVNGAEGIGTGWSCKLPN 894

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++V+E+      ++D  E            P  P+      + + +          + + 
Sbjct: 895  YDVREVVNNIRRMMDGEEPL----------PMLPSYKNFKGTIDELAP------NQYVIN 938

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                + +        +      QV K +++E +      K   L+ D R+   +     +
Sbjct: 939  GEVSILDSTTIEISELPVRTWTQVYKEQVLEPMLN-GTEKTPALIVDYREYHTDTTVKFI 997

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                     +     +  +  ++T    N  VL      + +      IL+++   R + 
Sbjct: 998  VKMTEQKLAEAEAAGLHKVFKLQTNLTCNSMVLFDHVGCLKKYDTALDILRDFFELRLKY 1057

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I+   + + +   V++ R   ++    
Sbjct: 1058 YGLRKEWLVGMLGAESARLNNQARFILEKIEGKIVIENKPKKELIKVLIQRGYDSDPVKA 1117

Query: 430  A 430
             
Sbjct: 1118 W 1118


>gi|289672552|ref|ZP_06493442.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           FF5]
          Length = 403

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 115/404 (28%), Positives = 197/404 (48%), Gaps = 15/404 (3%)

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  +L EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK 
Sbjct: 1   NLKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA 60

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            +++RF L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +
Sbjct: 61  ELIARFDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLV 120

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E+    E +        RR+     + A   +  + M   EP+TVV+S +GW+R  K 
Sbjct: 121 RAELIADAETYGD-----DRRSPIVARAEAKALSENELM-PTEPVTVVLSEKGWVRCAKG 174

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H +D + L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   + 
Sbjct: 175 HDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQ 234

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
                      + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   
Sbjct: 235 PPPGATFECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRP 294

Query: 656 VTG---DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKIC 706
           V     + +A V    +LL+F I  +P++ +GKG ++       ++        +     
Sbjct: 295 VPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQ 354

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                + +  R+ +    DL  + G+RG  G+ +P+GF R    
Sbjct: 355 GATLVLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDAL 398


>gi|297464683|ref|XP_001254710.3| PREDICTED: DNA topoisomerase II, beta isozyme [Bos taurus]
          Length = 1908

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 178/505 (35%), Gaps = 35/505 (6%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 712  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 767

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ ++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 768  GSVAEMSAYH-HGEVTLMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 826

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 827  TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 885

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 886  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 929

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 930  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 988

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 989  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1048

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1049 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1108

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLA--EKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                    +  +  + Q      +       +    L  S      +   E+ + ++   
Sbjct: 1109 WKEAQEKAAEEEESQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKG 1168

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQ 512
            +     +R++          A +++
Sbjct: 1169 REVSDLKRKSPSDLWKEDLAAFVEE 1193


>gi|320166777|gb|EFW43676.1| DNA topoisomerase II [Capsaspora owczarzaki ATCC 30864]
          Length = 1628

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 152/403 (37%), Gaps = 43/403 (10%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            + T ++   +A++    + +  + ++++    R+IP + DGFKP  R+++ A  +  L  
Sbjct: 686  AGTFLDHQTEAITYSEFINKELILFSMADNV-RSIPSVVDGFKPSQRKVLFACFKRNLKD 744

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++ G V      H HG+ S+  ++V +AQ +       L+   G FG     
Sbjct: 745  E---IKVAQLAGYVAEHSAYH-HGEVSLAGTIVNMAQNYTGSNNINLLLPLGQFGTRLQG 800

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANG 179
            G  AA+ RY   ++  +  LI    D    D    Y   + +  EP  +    P  L NG
Sbjct: 801  GKDAASARYIFTKLATLTRLIFPAND----DSLLNYLDEDGQRIEPEWYMPILPLSLING 856

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
              GI  G ++S+P+ + +++      ++   +     +  Y  G    TG I    +   
Sbjct: 857  CEGIGTGWSSSVPNFSPRDVVANIRLMMAGQDPEP--MCPYYNG---FTGTIEPLGKAD- 910

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI----IAKRI 295
                         R R C       +  + +TE+P  V      E++ +L+      K  
Sbjct: 911  -------------RFRVCGRITKLSATTLEITELPIGVWTQSYKEELEKLMEPNEKDKTP 957

Query: 296  PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQ 353
              ++D R+   +         +           +     +++       V     GR+ +
Sbjct: 958  GFIKDFRENHTDTSVHFTVTLSEENMAAAEAMGLAKKFKIDSTISTANMVFFDAEGRIKK 1017

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
                  IL+++   R +   +R S+ ++ +      L   +  
Sbjct: 1018 YDSPQAILRDFYDLRLKYYQKRKSWLVERLTEEWTRLDNKVRF 1060


>gi|326427380|gb|EGD72950.1| DNA topoisomerase II [Salpingoeca sp. ATCC 50818]
          Length = 1795

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 152/377 (40%), Gaps = 36/377 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++    A+     + +  + ++++    R+IP + DG KP  R+++ +  +  L  
Sbjct: 701  PGTYLDHATDAICYSDFINKELILFSMADNV-RSIPSIMDGLKPGQRKVLFSCFKRKLKD 759

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++ G V      H HG+ S+  ++V +AQ F       L+   G FG     
Sbjct: 760  E---IKVAQLAGYVSEHSAYH-HGEMSLAGTIVGMAQRFVGSNNLNLLLPIGQFGTRLAG 815

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  AA+ RY    ++ +A  I    D+  ++  +  + +  EP  +    P +L NG+ G
Sbjct: 816  GKDAASSRYIFTSLSPLARKIFHLADDALLNHLED-DGQTIEPEFYAPILPMVLVNGSDG 874

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G ++S+P++N +++  A +A+I+  E   ++L  +  G    TG I  + ++     
Sbjct: 875  IGTGWSSSVPNYNPRDLVNALIAMIEGQEP--DELHPWYAG---FTGEITPKGKD----- 924

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLED 300
                   + VR              I ++E+P +       E +  L      + P + +
Sbjct: 925  ------KYAVRGTLK----KLDETTIEISELPIRTWTQPYKEFLEGLAADDGKKPPQILE 974

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
                  +     +             + ++ +  +E     +   L    GR+ +   + 
Sbjct: 975  FSQYHTDTTVRFVVSMTPEQMQAAETKGLYKVFKLEGSISTSNMTLFDPQGRIKKYEGVQ 1034

Query: 359  GILKEWLAHRREVLFRR 375
             IL+++   R  +  +R
Sbjct: 1035 EILRDFFDVRLRLYQKR 1051


>gi|93278234|gb|ABF06582.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278238|gb|ABF06584.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 82/98 (83%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ +   +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG+IDGD+AAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|297736284|emb|CBI24922.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 84/522 (16%), Positives = 182/522 (34%), Gaps = 31/522 (5%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T +++  K +     + +  + ++++   +R+IP + DG KP  R+I+    +     
Sbjct: 665  PGTYLDQKEKLIKYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFCSFKRNFIK 723

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
             A   K A+  G V      H HG+QS+  +++ +AQ F       L+   G FG     
Sbjct: 724  EA---KIAQFSGYVSEHSAYH-HGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRHQG 779

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   A+ RY   R++ +   +    D+  +D+    + +  EP  +    P +L NG+ G
Sbjct: 780  GKDHASARYIYTRLSPITRFLFPKDDDILLDY-LNEDGQSIEPTWYVPTIPMVLVNGSEG 838

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G ++SIP++N ++I      L++   +                            + 
Sbjct: 839  IGTGWSSSIPNYNPRDIIANVRRLLNGEMMEPMDPWY-----------RGFRGTIEKTDP 887

Query: 243  YRLGRGGFRVRARW-CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
             +    G+ V+     V E       + V +          +E I       + P ++D 
Sbjct: 888  TKQESVGYTVKGIIEEVNETTLRISELPVRKWTQDY--KEFLESIMTGNDKIKDPFIKDY 945

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDG 359
            ++ + +         +         E +     + T+   +   L      + +    + 
Sbjct: 946  KEHNDDTTVHFEVIMSEENLLMAKQEGLLQKFKLTTKISTSNMHLFDSNGTIKKYETPEQ 1005

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+E+   R E   +R    +  ++  +  L+  +   L +     I+ N  +       
Sbjct: 1006 ILEEFFHLRLEFYEKRKRVLLDNLELELLKLENKVRFILGVVRGEIIVSNRKRADLFHEL 1065

Query: 420  RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
               +     + +L++ + +L   +  ++ ++ D L       D    + K  W      +
Sbjct: 1066 HQKVRATDYEYLLSMAIGTLTLEKVQELCADRDKLNK--GVDDLKKATPKALWITDLDAL 1123

Query: 480  R-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              E+ E           R        ++          K P 
Sbjct: 1124 ERELDEQDKNDARAEETRKQLKSRVMSEAGMKVSRQAPKNPR 1165


>gi|190589934|gb|ACE79226.1| DNA gyrase [Pseudomonas aeruginosa]
 gi|190589936|gb|ACE79227.1| DNA gyrase [Pseudomonas aeruginosa]
          Length = 98

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 53/98 (54%), Positives = 74/98 (75%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM 
Sbjct: 1   VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           ++A  +L  ++++ VD+   Y+  +  P V P+K PNL
Sbjct: 61  KLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNL 98


>gi|218508520|ref|ZP_03506398.1| DNA topoisomerase IV subunit A [Rhizobium etli Brasil 5]
          Length = 455

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 195/320 (60%), Positives = 256/320 (80%)

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           GLLIAYLNIDE+I IIR ED+PKPVMV+R+ LT+NQV+AILN+RLRSLRKLEE++I+ E 
Sbjct: 3   GLLIAYLNIDEVIRIIREEDEPKPVMVARWDLTDNQVEAILNMRLRSLRKLEEFEIRKEF 62

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  EK +I++LL S  +QW  +A EI EVK+ F+K+T++GRRRT F +   AD+  +Q
Sbjct: 63  DELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEAIQ 122

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           QAMIEKEPITVVIS +GWIR+LK H  D + L FKEGD LK+A  A TTD+IL+++T GK
Sbjct: 123 QAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKVAFPAQTTDKILIVTTGGK 182

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           A+TL    L  GRGHGE +++++D++++Q ++TAFV+D + K L+VS+ GN F+V E+E+
Sbjct: 183 AFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPSRKQLIVSTAGNGFVVAEAEL 242

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQS 691
           IANTRKGK  + V+  E+ +L+V V+GDHVAVVGENRKLL+F + Q+PEM+RGKGVRLQ 
Sbjct: 243 IANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVFPLAQVPEMTRGKGVRLQR 302

Query: 692 YKDGGISDVICFKICEGLTW 711
           YKDGGISDV CF I +GL W
Sbjct: 303 YKDGGISDVRCFAISDGLVW 322


>gi|194383172|dbj|BAG59142.1| unnamed protein product [Homo sapiens]
          Length = 1178

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 86/506 (16%), Positives = 181/506 (35%), Gaps = 37/506 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 633  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 688

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 689  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 747

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 748  TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 806

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 807  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 850

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 851  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 909

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 910  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 969

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 970  YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1029

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--- 486
                 + ++  + E      +  +        D         W+    ++ E+ +     
Sbjct: 1030 W-KEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAK 1088

Query: 487  SKSTDLGRRRTTFCEVSRADKATLQQ 512
             +  +  +R++          A +++
Sbjct: 1089 GREVNDLKRKSPSDLWKEDLAAFVEE 1114


>gi|326427379|gb|EGD72949.1| DNA topoisomerase II, variant [Salpingoeca sp. ATCC 50818]
          Length = 1761

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 152/377 (40%), Gaps = 36/377 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++    A+     + +  + ++++    R+IP + DG KP  R+++ +  +  L  
Sbjct: 667  PGTYLDHATDAICYSDFINKELILFSMADNV-RSIPSIMDGLKPGQRKVLFSCFKRKLKD 725

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++ G V      H HG+ S+  ++V +AQ F       L+   G FG     
Sbjct: 726  E---IKVAQLAGYVSEHSAYH-HGEMSLAGTIVGMAQRFVGSNNLNLLLPIGQFGTRLAG 781

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  AA+ RY    ++ +A  I    D+  ++  +  + +  EP  +    P +L NG+ G
Sbjct: 782  GKDAASSRYIFTSLSPLARKIFHLADDALLNHLED-DGQTIEPEFYAPILPMVLVNGSDG 840

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G ++S+P++N +++  A +A+I+  E   ++L  +  G    TG I  + ++     
Sbjct: 841  IGTGWSSSVPNYNPRDLVNALIAMIEGQEP--DELHPWYAG---FTGEITPKGKD----- 890

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLED 300
                   + VR              I ++E+P +       E +  L      + P + +
Sbjct: 891  ------KYAVRGTLK----KLDETTIEISELPIRTWTQPYKEFLEGLAADDGKKPPQILE 940

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
                  +     +             + ++ +  +E     +   L    GR+ +   + 
Sbjct: 941  FSQYHTDTTVRFVVSMTPEQMQAAETKGLYKVFKLEGSISTSNMTLFDPQGRIKKYEGVQ 1000

Query: 359  GILKEWLAHRREVLFRR 375
             IL+++   R  +  +R
Sbjct: 1001 EILRDFFDVRLRLYQKR 1017


>gi|291399726|ref|XP_002716252.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Oryctolagus
            cuniculus]
          Length = 1667

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 86/505 (17%), Positives = 179/505 (35%), Gaps = 35/505 (6%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++               K A++ 
Sbjct: 757  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCL---NRNDKREVKVAQLA 812

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 813  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 871

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 872  TMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 930

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 931  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 974

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 975  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 1033

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 1034 VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1093

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1094 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1153

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLA--EKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                    +  +  + Q      +       +    L  S      +   E+ + ++   
Sbjct: 1154 WKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKG 1213

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +  +R++          A +++
Sbjct: 1214 REVNDLKRKSPSDLWKEDLAAFVEE 1238


>gi|164456286|dbj|BAF97646.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 77/112 (68%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y +LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYGTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|124108787|gb|ABM90970.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 60/93 (64%), Positives = 78/93 (83%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           Y L+ GQGNFG+IDGDSAAA RYTE R+ ++A 
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 93


>gi|302673662|ref|XP_003026517.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
 gi|300100200|gb|EFI91614.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
          Length = 1494

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 144/401 (35%), Gaps = 35/401 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T +  +V  + +   + +  + ++++    R+IP + DG KP  R+II    +  L 
Sbjct: 733  KPGTFLNHDVDEIPISDFINKELILFSMADNI-RSIPSVADGLKPGQRKIIWGCFKRKL- 790

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                  K A++VG V      H HG+QS+  ++V LAQ +       L+   G +G  D 
Sbjct: 791  --KKEIKVAQLVGYVSEHAAYH-HGEQSLTMTIVNLAQDYVGSNNINLLMPNGQYGTRDQ 847

Query: 123  -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   AA RY    ++ +   +    DE  +  +   + +  EP  +    P +L NG  
Sbjct: 848  GGKDHAAARYIFTELSPLTRSLFNTADEPLLK-QQKEDNQPVEPEYYMPIIPMVLVNGAD 906

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIPS+N  +I      L+D  E            P FP             E
Sbjct: 907  GIGTGWSTSIPSYNPTDIVANIRRLMDGEEQV----------PMFP----WWRGFNG--E 950

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLE 299
                G+  + V               + +TE+P          ++  ++       P   
Sbjct: 951  IKSTGKNKYDVTGIAR----KLNDTQVEITELPIHKWTQNFKAELETMMVSEKGEAPTYT 1006

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            +  D +     I +         +      F L+   +   +       G++ +    + 
Sbjct: 1007 EHHDNTNVHFIITMSATELKKAEEQGFVEYFKLTSKISTANMIAFNFD-GKITKYDSPEE 1065

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            I++E+   R     +R  +    +  ++  L         I
Sbjct: 1066 IVEEFYPQRLMYYQKRKDYLADELQVQLSRLNNQARFIQMI 1106


>gi|259089989|gb|ACV91835.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 98

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 56/98 (57%), Positives = 76/98 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
            R+ ++A  ++  ++++ VDF D Y+  +  P V P+K
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTK 98


>gi|29165298|gb|AAO65582.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Hadar]
          Length = 99

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 55/99 (55%), Positives = 78/99 (78%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 99


>gi|156063624|ref|XP_001597734.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980]
 gi|154697264|gb|EDN97002.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1846

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 158/403 (39%), Gaps = 23/403 (5%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++   K ++    + +  + ++++    R+IP + DG KP  R++++A  +  L  
Sbjct: 800  PGTYLDHTDKMLTYDNFINKELILFSMADNL-RSIPSVIDGLKPGQRKVMYACFKRNLTN 858

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V +V    H HG+ S+  ++V LAQ F        +   GNFG+    G 
Sbjct: 859  DMKVVELAGYVSQVSA-YH-HGEASMQMTIVGLAQNFVGSNNVNCLEPSGNFGSRLQGGS 916

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY   R++  A  +   +D+  +++    +    EPV +    P +L NG  GI 
Sbjct: 917  DAASARYIFTRLSPFARRVYSALDDPVLEYNVD-DGRSIEPVTYFPVVPMVLINGADGIG 975

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IP+++  EI       +   + S E+     + P F          +   E   
Sbjct: 976  TGWSTNIPNYHPVEIVNNLKRRMGRLDDSGEEKPFETMMPWF-------RGWKGTAEPA- 1027

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-EDIRD 303
             G   ++            G   + +TE+P ++       K+ E+I A+++P   +D ++
Sbjct: 1028 -GPDRYKFNGIIR----ETGDTEVEITELPIRMWTDDFKAKLEEIIKAEKVPSFIKDYKE 1082

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
             +      ++   +       L+E +     +      +  V    R  Q+   + +   
Sbjct: 1083 FNDHKTVHMIIQMDDKHMKAALVEGLAEKFKLNKTVATSNLVAFDHRG-QIRKYEKVEDI 1141

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
                  +     +  +   +++     + L      + EII  
Sbjct: 1142 LEEFYEQRFKMYTVRKAYWVNKLNVEYRKLTNQARFVTEIIEN 1184


>gi|313192286|emb|CBY05951.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 81/103 (78%), Gaps = 1/103 (0%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++A S +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGN
Sbjct: 4   VYA-SRIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGN 62

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           FG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 63  FGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 105


>gi|260667425|gb|ACX47923.1| DNA gyrase subunit A [Acinetobacter baumannii]
          Length = 98

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 75/98 (76%)

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 1   RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 60

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           T++A  +L  +++D VD+ D Y+  +  P V P++ PN
Sbjct: 61  TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 98


>gi|2281046|emb|CAB10849.1| DNA Gyrase subunit A [Mycoplasma hominis]
          Length = 90

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 59/90 (65%), Positives = 73/90 (81%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD RDG KPVHRRI++ MSE+G+ + A  KKSARIVG+V+GK HPHGD SVY+++
Sbjct: 1   VSRALPDARDGLKPVHRRILYGMSELGMFYTAPHKKSARIVGDVLGKYHPHGDSSVYEAM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           VR+AQ F  RYPLI G GNFG++DGD AAA
Sbjct: 61  VRMAQDFSLRYPLIDGHGNFGSVDGDEAAA 90


>gi|213865327|ref|ZP_03387446.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 357

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 91/261 (34%), Gaps = 16/261 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S++G+          + +      SA   KE D +   L A+T
Sbjct: 6   DINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANT 65

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        Y+    +
Sbjct: 66  HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNV 125

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
            + ++ G       +E       G   + ++  +++  V   +G D V +     K++ F
Sbjct: 126 FMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRF 185

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
             D +  M R   GVR            +     EG   +      Y +           
Sbjct: 186 KEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKS 244

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           R   G +  K   R+G  + +
Sbjct: 245 RATQGVISIKVTERNGSVVGA 265



 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 171 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 230

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 231 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 290

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 291 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 327


>gi|281203022|gb|EFA77223.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1265

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 87/408 (21%), Positives = 173/408 (42%), Gaps = 35/408 (8%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            ++    V+ ++K +S    + +  + Y+ +    R+IP + DG KP  R+I+ A  +  L
Sbjct: 771  ADMTQSVDHSIKELSYSDFINKELVHYSWAA-NHRSIPSVMDGLKPGQRKILFACFKRNL 829

Query: 67   DFGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                   K A++ G V      H HG+QS+  ++V++AQ F      PLIS  G FG   
Sbjct: 830  THE---IKVAQLSGYVAEHTAYH-HGEQSLSSTIVKMAQDFVGSNNIPLISQGGQFGTRL 885

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              GD +A+ RY   ++ Q+  LI   +DE++++F +    E  +P  +    P +L NG+
Sbjct: 886  MGGDDSASPRYIFTKLNQITRLIYNDLDEESLNFLEE-EGESIQPSYYIPIIPMILVNGS 944

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            SGI VGM+ S+P ++  ++ E  L L  + +  ++KL+ +  G     G I++  +    
Sbjct: 945  SGIGVGMSNSVPLYSPIDLIEYLL-LKLSNQRQMKKLIPWYRG---FKGNIVISGKS--- 997

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
                     F+      +     G   + + EIP     S   + + +LI    I    +
Sbjct: 998  ---------FKTSGLIKIT----GRNSLSIREIPIGKWTSDYKQVLNDLIEQDIIKSFTE 1044

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
               E+  +  +    +      +     +  L  + +    N+ + +     +       
Sbjct: 1045 ENTENTVNFTVSTTYEQMERLEESTENELLSLFKLTSLVHPNLTLFAPDGTVKKY---ES 1101

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
            ++E +     V       R + I ++++         +N  ++IA  +
Sbjct: 1102 VEEIVDEFYGVRLDAYVKRRENIMKKLQQQIDKHKVTINFIQLIASGK 1149


>gi|225678456|gb|EEH16740.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb03]
          Length = 1788

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 91/572 (15%), Positives = 202/572 (35%), Gaps = 77/572 (13%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++   + ++    + +  + ++++    R+IP + DG KP  R++++   +  + 
Sbjct: 783  KPGTFLDHTTEEITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFKRNVR 841

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 842  KD---IKVVELAGYVSGMTAYQ-HGDVSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 897

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  I    DE  + +    +    EP ++    P +L NG  
Sbjct: 898  GGSDSASARYIYTRLSPFARRIFHPADEPLLTYNVD-DGHTIEPEIYVPVVPLVLINGAD 956

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N ++I      L+D   +   +                        E
Sbjct: 957  GIGTGWSTSIPNYNPEDIVANLKCLMDGEPLVPMQP--------------WFRGFTG--E 1000

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
               LG   ++   R        G   + +TE+P +       +++ E+I A+++P   +D
Sbjct: 1001 VVSLGGERYKFSGRIS----QVGENEVEITELPIRCWTQDFKDRLEEIIKAEKVPSFIKD 1056

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
             +D +       +   +       + E +     +      +  V     GR+ +    +
Sbjct: 1057 YKDYNTHTKVHFVIQLDEKHAAKAIAEGLEEKFKLSKTIATSNLVAFDPEGRITKYDSPE 1116

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRV------------------------------E 388
             IL+E+ + R +   +R  +++  + R +                              E
Sbjct: 1117 DILREFYSVRIKFYEKRKQYQLSQLQRDLDKLSNQARFIQMIIDGKLVISKKPKAKLIQE 1176

Query: 389  ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE------NQVDAILNLRLRSLRKL 442
            + +    A+  I +           +       S ++      +  D +  + L SL + 
Sbjct: 1177 LKEKGFKAFSKISDAAKSGETAPVVEEDDNEEKSDSDDAELGADSYDYLFAMPLWSLTQE 1236

Query: 443  EEYQIKSELDNLLAEKEKIDSL------LNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
               +++ ++     E + +  L               +   ++ +     +KS    RR 
Sbjct: 1237 RVEKLRRQIGEKEIEVDNLIKLSKEDIWRKDLDDFIAEWKFQLEDEGRRRAKSAKSVRRV 1296

Query: 497  TTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            ++  + +       + A  +     +  + + 
Sbjct: 1297 SSKLKTAVKGPKKRKAAHDDDSDFDLPKTKKS 1328


>gi|11761962|gb|AAG40264.1|AF303643_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|4469257|emb|CAB38319.1| topoisomerase IV [Klebsiella oxytoca]
          Length = 106

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L 
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMMPARLPNILL 106


>gi|12642570|gb|AAK00288.1|AF302140_1 GyrA [Stenotrophomonas maltophilia]
          Length = 97

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 60/97 (61%), Positives = 77/97 (79%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR++ AM+E+       + KSARIVG+VIGK HPHGDQSVYD+LVRLAQPF  RY L+ G
Sbjct: 1   RRVLFAMNELNAHSNKPYFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
           QGNFG+IDGDSAAA RYTEARM+++A  ++  +D++ 
Sbjct: 61  QGNFGSIDGDSAAAMRYTEARMSRLAHELMADIDKET 97


>gi|93278230|gb|ABF06580.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278242|gb|ABF06586.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 82/98 (83%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ +   +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG+IDGD+AAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|332847785|ref|XP_003315524.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha [Pan
            troglodytes]
          Length = 1500

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 662  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 717

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 718  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 776

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 777  TMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 835

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+EI      L+D  E            P  P+      + E +          + + 
Sbjct: 836  FDVREIVNNIRRLMDGEEPL----------PMLPSYKNFKGTIEELAP------NQYVIS 879

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 880  GEVAIL----NSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 935

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  IL+++   R
Sbjct: 936  KFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 995

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 996  LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1055

Query: 427  QVDA 430
                
Sbjct: 1056 VKAW 1059


>gi|164456296|dbj|BAF97651.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456298|dbj|BAF97652.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456304|dbj|BAF97655.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456322|dbj|BAF97664.1| DNA gyrase subunit A [Corynebacterium mastitidis]
          Length = 112

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 79/112 (70%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+AVDF   Y+++  EP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENAVDFSPNYDDKTMEPDVLPSRVPNLLMNGSGG 112


>gi|164456310|dbj|BAF97658.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 77/112 (68%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y +LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDAAIYYTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|153824230|ref|ZP_01976897.1| DNA gyrase subunit A [Vibrio cholerae B33]
 gi|126518247|gb|EAZ75472.1| DNA gyrase subunit A [Vibrio cholerae B33]
          Length = 411

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 99/324 (30%), Gaps = 33/324 (10%)

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L S ++    I  E+  ++  FS +        T         A     +       
Sbjct: 5   MHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHEGY 64

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V         + +      SA   KE D ++  L A+T D ILL ST GK Y +    L 
Sbjct: 65  VKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLP 124

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             S    G+ I  L+ L  N+ I        +     + + +  G        +      
Sbjct: 125 LASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRA 184

Query: 637 KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------------------ 677
            G   L +  E+ +  V    G+  + +  +  K++ F   +                  
Sbjct: 185 NGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQ 244

Query: 678 -------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
                  +  M R   GVR     DG     +     EG   +      Y +  +     
Sbjct: 245 PEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTENGYGKRTSLSEYP 303

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              RG  G +  K   R+G  + +
Sbjct: 304 TKGRGTQGVVSIKVSERNGSVVGA 327


>gi|186510360|ref|NP_001118686.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
            topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
            DNA-dependent ATPase [Arabidopsis thaliana]
 gi|332643306|gb|AEE76827.1| DNA topoisomerase 2 [Arabidopsis thaliana]
          Length = 1438

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 150/400 (37%), Gaps = 34/400 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                +++    V+    + +  + ++++   +R+IP + DG KP  R+I+    +     
Sbjct: 671  PGNHLDQRQPKVTYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFVAFK---KI 726

Query: 69   GAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++VG V  +   H HG+QS+  +++ +AQ +       L+   G FG     
Sbjct: 727  ARKEMKVAQLVGYVSLLSAYH-HGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSG 785

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  +A+ RY   +++ V  ++    D+  +D     + +  EP  +    P +L NG  G
Sbjct: 786  GKDSASARYIFTKLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEG 844

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE- 241
            I  G +T IP++N +EI      L++   +                        +  +E 
Sbjct: 845  IGTGWSTFIPNYNPREIVANVRRLLNGESMVPMDP--------------WYRGFKGTIEK 890

Query: 242  -SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
             + + G   + +   +           I +TE+P +         +  L      P  +D
Sbjct: 891  TASKEGGCTYTITGLYE----EVDETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQD 946

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLD 358
            ++  + E         +         E       + T    +   L   +  + + +  +
Sbjct: 947  VKAYNDEKSVDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTPE 1006

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             IL+E+   R E   +R    ++ ++  +  L+      L
Sbjct: 1007 QILEEFFDLRFEYYEKRKETVVKNMEIELLKLENKARFIL 1046


>gi|119581065|gb|EAW60661.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_a [Homo sapiens]
          Length = 837

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 192 LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 247

Query: 80  GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
           G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 248 GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 306

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
             ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 307 TMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 365

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            +V+EI      L+D  E            P  P+      + E +          + + 
Sbjct: 366 FDVREIVNNIRRLMDGEEPL----------PMLPSYKNFKGTIEELAP------NQYVIS 409

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
               +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 410 GEVAIL----NSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 465

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
             +         +     +  +  ++T    N  VL      + +   +  IL+++   R
Sbjct: 466 KFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 525

Query: 369 REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 526 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 585

Query: 427 QVDA 430
               
Sbjct: 586 VKAW 589


>gi|15229538|ref|NP_189031.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
            topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
            DNA-dependent ATPase [Arabidopsis thaliana]
 gi|1174740|sp|P30182|TOP2_ARATH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|474890|gb|AAA65448.1| topoisomerase II [Arabidopsis thaliana]
 gi|9294657|dbj|BAB03006.1| DNA topoisomerase II [Arabidopsis thaliana]
 gi|332643305|gb|AEE76826.1| DNA topoisomerase 2 [Arabidopsis thaliana]
          Length = 1473

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 150/400 (37%), Gaps = 34/400 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                +++    V+    + +  + ++++   +R+IP + DG KP  R+I+    +     
Sbjct: 671  PGNHLDQRQPKVTYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFVAFK---KI 726

Query: 69   GAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++VG V  +   H HG+QS+  +++ +AQ +       L+   G FG     
Sbjct: 727  ARKEMKVAQLVGYVSLLSAYH-HGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSG 785

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  +A+ RY   +++ V  ++    D+  +D     + +  EP  +    P +L NG  G
Sbjct: 786  GKDSASARYIFTKLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEG 844

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE- 241
            I  G +T IP++N +EI      L++   +                        +  +E 
Sbjct: 845  IGTGWSTFIPNYNPREIVANVRRLLNGESMVPMDP--------------WYRGFKGTIEK 890

Query: 242  -SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
             + + G   + +   +           I +TE+P +         +  L      P  +D
Sbjct: 891  TASKEGGCTYTITGLYE----EVDETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQD 946

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLD 358
            ++  + E         +         E       + T    +   L   +  + + +  +
Sbjct: 947  VKAYNDEKSVDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTPE 1006

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             IL+E+   R E   +R    ++ ++  +  L+      L
Sbjct: 1007 QILEEFFDLRFEYYEKRKETVVKNMEIELLKLENKARFIL 1046


>gi|320593621|gb|EFX06030.1| DNA topoisomerase 2 [Grosmannia clavigera kw1407]
          Length = 1724

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 100/558 (17%), Positives = 201/558 (36%), Gaps = 63/558 (11%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++++ K+++    + +  + ++++    R+IP + DG KP  R++I+   +  +  
Sbjct: 801  PGTFLDQSTKSITYSDFVNKELILFSMADNM-RSIPSVVDGLKPGQRKVIYTCLKKNIVK 859

Query: 69   GAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                +K   + G V  +   H HGD S++ ++V LAQ F        +   GNFG+    
Sbjct: 860  D---QKVFELAGSVSKLAAYH-HGDASLHQTIVGLAQNFVGSNNINCLEPSGNFGSRLSG 915

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN-EEDSEPVVFPSKFPNLLANGTS 181
            G  AA+ RY   R++  A  +   +DE  ++  +  +     EP  +    P +L NG  
Sbjct: 916  GSDAASARYIFTRLSPFARRVFNPLDEPVLE--NNIDEGSVIEPKNYAPIVPMVLINGAD 973

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N  ++       +        + L +                +   E
Sbjct: 974  GIGTGWSTSIPNYNPVDVVNNLKRRMGRLAGHENEELPFESM------IPWFRGWKGTPE 1027

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP----L 297
               +     R R    + +  R    IVV+E+P ++       K+ E+I A++ P     
Sbjct: 1028 PDSV---PGRYRFNGIIYQDDRNPNEIVVSELPVRMWTDDFKAKLEEVIRAEKSPSWIKD 1084

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM---------------------- 335
             ++  D       I +  K+     D  +   F LS                        
Sbjct: 1085 YKEFNDHRNVHFVIQMEDKHVQAAVDEGLIDRFKLSKTVGTTNLVAFDINGQIRRYEKVE 1144

Query: 336  ---ETRFPLNMNVLSMGRVPQ---VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE- 388
               E  F   +N+  + +             L       +E++  +     +  D  VE 
Sbjct: 1145 DILEEFFNYRLNMYGLRKKHWLGVYHTEFRKLNNQYRFVQEIMDGKLVVSKKKKDVVVEE 1204

Query: 389  -ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
               +          +       +D            T    D +L++ + S  +    ++
Sbjct: 1205 LRARSYEAFPKESSDPKKAKTKDDDDNEDEDEIDGGTARDYDYLLSMPIWSFTQERLDRL 1264

Query: 448  KSELDNLLAEKEKIDSLL------NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            K ++D   A+ +++D             +   +   +++   EI +    +GRR +    
Sbjct: 1265 KKQIDAKKAQYDELDVKSEKDLWCFDLDEFLAEWENQLQLDSEIQTTIRRMGRRTSKKIG 1324

Query: 502  VSRADKATLQQAMIEKEP 519
              R  KA       +K+P
Sbjct: 1325 AGRGRKARADDEYTDKKP 1342


>gi|297272911|ref|XP_002808175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like
            [Macaca mulatta]
          Length = 1481

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 660  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 715

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 716  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 774

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 775  TMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 833

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+E+      L+D  E            P  P+      + E +          + + 
Sbjct: 834  FDVREVVNNIRRLMDGEEPL----------PMLPSYKNFKGTIEELAP------NQYVIS 877

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 878  GEVAIL----NSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 933

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  IL+++   R
Sbjct: 934  KFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 993

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 994  LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1053

Query: 427  QVDA 430
                
Sbjct: 1054 VKAW 1057


>gi|296202778|ref|XP_002748606.1| PREDICTED: DNA topoisomerase 2-alpha [Callithrix jacchus]
          Length = 1531

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 693  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 748

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 749  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 807

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 808  TMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 866

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+E+      L+D  E            P  P+      + E +          + + 
Sbjct: 867  FDVREVVNNIRRLMDGEEPL----------PMLPSYKNFKGTIEELAP------NQYVIS 910

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 911  GEVAIL----NSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 966

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  IL+++   R
Sbjct: 967  KFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 1026

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 1027 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1086

Query: 427  QVDA 430
                
Sbjct: 1087 VKAW 1090


>gi|319444107|gb|ADV58131.1| GyrA [Acinetobacter baumannii]
          Length = 102

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 58/102 (56%), Positives = 77/102 (75%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RMT++A  
Sbjct: 1   IGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHE 60

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIA
Sbjct: 61  LLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIA 102


>gi|331213043|ref|XP_003307791.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309298194|gb|EFP74785.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1566

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 82/406 (20%), Positives = 155/406 (38%), Gaps = 38/406 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T +++NV  ++    + +  + ++++    R+IP + DGFKP  R+++ A  +  L 
Sbjct: 717  EPGTHLDQNVSQITYTEFINKELILFSMADNI-RSIPSMVDGFKPGQRKVLFACFKRKLK 775

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++ G        H HG+ S+  ++V LAQ F       ++S  G FG    
Sbjct: 776  AE---IKVAQLGGYCSEHSAYH-HGEASLTQTIVGLAQNFVGSNNINVLSPNGQFGTRAS 831

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY    + ++  +I    D++ +++  T +    EP  +    P +L NG+S
Sbjct: 832  GGKDAASARYIFTNVEKITRVIFPPADDNVLNY-LTDDGTQIEPEWYIPILPMVLVNGSS 890

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++ IP++N  +I       + N  +                           + 
Sbjct: 891  GIGTGWSSDIPNYNPVDIVNNLRRRLANEPMEPMHP--------------WFRGFTGQIT 936

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI-----P 296
            S   G+  ++V   W           I +TE+P +V      E+I   I +         
Sbjct: 937  SEAPGK--YKVLGEW----DQPDEDTIEITELPVRVWNQSYKEQIEAWINSTDKIPALVK 990

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
               +   E+     I L  + +       +E +F LS         +     G++ +   
Sbjct: 991  DYREYHTETTVHFIISLTERGKDAIKKEGIEKVFKLS-ANLSITNMVCFDPSGKIKKYST 1049

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
             + IL ++   R     +R  + +  +    E L       L I E
Sbjct: 1050 PEQILDDFYDVRLAYYQKRKEYLVNDLTLMYERLSNQARFVLMIIE 1095


>gi|11761920|gb|AAG40243.1|AF303622_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761924|gb|AAG40245.1|AF303624_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761926|gb|AAG40246.1|AF303625_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761928|gb|AAG40247.1|AF303626_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761930|gb|AAG40248.1|AF303627_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761932|gb|AAG40249.1|AF303628_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761934|gb|AAG40250.1|AF303629_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761938|gb|AAG40252.1|AF303631_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761940|gb|AAG40253.1|AF303632_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761942|gb|AAG40254.1|AF303633_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761946|gb|AAG40256.1|AF303635_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761948|gb|AAG40257.1|AF303636_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761950|gb|AAG40258.1|AF303637_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761952|gb|AAG40259.1|AF303638_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761958|gb|AAG40262.1|AF303641_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761960|gb|AAG40263.1|AF303642_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761970|gb|AAG40268.1|AF303647_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761982|gb|AAG40274.1|AF303653_1 topoisomerase IV subunit C [Klebsiella pneumoniae subsp. ozaenae]
 gi|11761984|gb|AAG40275.1|AF303654_1 topoisomerase IV subunit C [Klebsiella pneumoniae subsp.
           rhinoscleromatis]
          Length = 106

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L 
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|291405994|ref|XP_002719184.1| PREDICTED: DNA topoisomerase II, alpha isozyme-like [Oryctolagus
            cuniculus]
          Length = 1181

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 79/424 (18%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 693  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 748

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 749  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 807

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 808  TMLSPLARLLFPPKDDHTLRFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 866

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+EI      L+D  E            P  P+      + E +          + + 
Sbjct: 867  FDVREIVNNIRRLMDGEEPL----------PMLPSYKNFKGTIEELAP------NQYVIN 910

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 911  GEVAIL----NSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 966

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  ILK++   R
Sbjct: 967  KFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILKDFFELR 1026

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 1027 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1086

Query: 427  QVDA 430
                
Sbjct: 1087 VKAW 1090


>gi|156088413|ref|XP_001611613.1| DNA topoisomerase II [Babesia bovis T2Bo]
 gi|154798867|gb|EDO08045.1| DNA topoisomerase II, putative [Babesia bovis]
          Length = 1437

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 86/575 (14%), Positives = 188/575 (32%), Gaps = 44/575 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T V+ ++K +     + +  + +++    ER+IP + DG+KP  R+++    +  L 
Sbjct: 648  EHGTTVDHSIKKLRYTDFINKELIQFSIYD-TERSIPSVVDGWKPGQRKVLFGCLKRNLV 706

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++ G V      H HG+ S+  +++ +AQ F       ++   G FG+   
Sbjct: 707  ---GECKVAQLTGYVAEHSAYH-HGEASLQQTIINMAQNFVGSNNINVLEPCGQFGSRKE 762

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  A+A RY   ++  +  LI    D++ ++++     +  EP+ +    P +L NG+ 
Sbjct: 763  GGKDASAARYIFTKLNPITRLIFVEEDDNILEYQ-NEEGQTIEPMYYIPTIPMVLVNGSE 821

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++ IP++N  +I +     ++N ++              P      +    I  
Sbjct: 822  GIGTGFSSQIPNYNPLDIIDNLKRYLNNVDMK-------------PMVPWYHKFTGEIEP 868

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            + + G         +   +   G   I    I       R+  +  E  +  + PL+   
Sbjct: 869  NDKGGFD---CLGNYQWLDEN-GLLEITELPIRKWTHDYRVFLESLEQGVNGKEPLILGF 924

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
             D S  +        N     +++ E +  +  + T        L      ++      L
Sbjct: 925  VDNSTHESVHFTLNVNPECIEEVINEGVDKVFKLRTSIATTNMTLFDANK-KLKRYSNEL 983

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            +         L      +   I+    +L+ +      I  ++            +V   
Sbjct: 984  EIIRDFAAVRLATYEKRKTYLINNLKLLLRRISNQVRFIHMVV---------NEELVLFK 1034

Query: 422  SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--- 478
                  V  + +L   S   + +   +    N      +     ++    +N +      
Sbjct: 1035 KAKATLVAELRDLGFDSNTDILKGSEEPSTLNEPVTPSRRSGTQDAPGADYNYLLNMPLW 1094

Query: 479  --IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
                E  +  ++       +      + A    +      +  I +            SH
Sbjct: 1095 SLTLEQVQKLNEEHAQKENQLRILLETTATDMWMDDLNKVEVAIKMAYQQDEITAPTPSH 1154

Query: 537  SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
            +  +     K   S      A         S+ G 
Sbjct: 1155 AALMQLTKIKRKASQSQRSTATPKATQSPPSSRGN 1189


>gi|164456288|dbj|BAF97647.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456294|dbj|BAF97650.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456306|dbj|BAF97656.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456312|dbj|BAF97659.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 78/112 (69%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y++LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYNTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|93278248|gb|ABF06589.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 98

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 63/98 (64%), Positives = 81/98 (82%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ L    A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLNLTSKVAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQSFSMRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG++DGDSAAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSVDGDSAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|313192250|emb|CBY05933.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 56/97 (57%), Positives = 77/97 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 100


>gi|292830|gb|AAA61209.1| DNA topoisomerase II (EC 5.99.1.3) [Homo sapiens]
          Length = 1531

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 693  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 748

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 749  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 807

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 808  TMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 866

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+EI      L+D  E            P  P+      + E +          + + 
Sbjct: 867  FDVREIVNNIRRLMDGEEPL----------PMLPSYKNFKGTIEELAP------NQYVIS 910

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 911  GEVAIL----NSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 966

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  IL+++   R
Sbjct: 967  KFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 1026

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 1027 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1086

Query: 427  QVDA 430
                
Sbjct: 1087 VKAW 1090


>gi|291000712|ref|XP_002682923.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284096551|gb|EFC50179.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1457

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 141/337 (41%), Gaps = 32/337 (9%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N     T ++ + K +S    +++  + ++ +  K R+IP + DG KP  R+I+ +  + 
Sbjct: 679 NNHQEGTYIDHSKKEISYTDFIDKELILFSKADCK-RSIPSIVDGLKPGQRKILFSCFKR 737

Query: 65  GLDFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN 120
            L       K A++ G V  +   H HG+ S+  ++V +AQ F       L+   G FG 
Sbjct: 738 NL---KKEIKVAQLAGYVSEQSAYH-HGEDSLNGTVVNMAQNFVGSNNINLLYPGGMFGT 793

Query: 121 I--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
               G  +A+ RY   +++++   I    D+  +++ D  + +  EP  +    P +L N
Sbjct: 794 RLQGGKDSASPRYIFTKLSEITRYIFPKADDPVLEYLDD-DGQSIEPRFYVPILPMVLVN 852

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+ GI    +T+I ++N  +I E   AL              I G +        +  + 
Sbjct: 853 GSEGIGTAWSTNIETYNPVDIVEGLKAL--------------IKGEEAKEFHPWYKGFDG 898

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I+E  RL    ++ +      +       + ++E+P ++      E++ +++ A+++   
Sbjct: 899 IIE--RLAPTKWQTKGVIEKIDDNT----LDISELPIRIWTESFKERLEKMMEAQQVDDF 952

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
            +   +      + +  K      D  +   F L   
Sbjct: 953 RENHTDVTVSFTVKMTDKQMKDAEDAGLYDYFKLFKK 989


>gi|124108797|gb|ABM90975.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108801|gb|ABM90977.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 59/93 (63%), Positives = 78/93 (83%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           L+ GQGNFG+IDGDSAAA RYTE R+ ++A  +
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGL 93


>gi|19913406|ref|NP_001058.2| DNA topoisomerase 2-alpha [Homo sapiens]
 gi|13959709|sp|P11388|TOP2A_HUMAN RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|3869316|gb|AAC77388.1| topoisomerase II alpha [Homo sapiens]
 gi|119581067|gb|EAW60663.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_c [Homo sapiens]
 gi|187954517|gb|AAI40792.1| TOP2A protein [Homo sapiens]
 gi|306921645|dbj|BAJ17902.1| topoisomerase (DNA) II alpha 170kDa [synthetic construct]
          Length = 1531

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 693  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 748

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 749  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 807

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 808  TMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 866

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+EI      L+D  E            P  P+      + E +          + + 
Sbjct: 867  FDVREIVNNIRRLMDGEEPL----------PMLPSYKNFKGTIEELAP------NQYVIS 910

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 911  GEVAIL----NSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 966

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  IL+++   R
Sbjct: 967  KFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 1026

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 1027 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1086

Query: 427  QVDA 430
                
Sbjct: 1087 VKAW 1090


>gi|196000919|ref|XP_002110327.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
 gi|190586278|gb|EDV26331.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
          Length = 1164

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 81/509 (15%), Positives = 169/509 (33%), Gaps = 39/509 (7%)

Query: 15   ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            + V  +S    + +  + ++ +    R+IP L DG KP  R+++    +          K
Sbjct: 677  KEVSDISYSDFVNKELIHFSNADNI-RSIPSLMDGLKPGQRKVLFTCFKRN---DKKDIK 732

Query: 75   SARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAA 128
             A++ G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+
Sbjct: 733  VAQLAGSVAEMSAYH-HGEASLMGTIINLAQNFVGSNNINLLQPIGQFGTRLHGGKDSAS 791

Query: 129  YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
             RY    ++ VA  +    DE  ++++   +    EP  +    P +L NG  GI  G +
Sbjct: 792  ARYIFTMLSPVARYMFDQKDEPLLEYQF-EDNLRIEPDWYAPLIPVVLVNGAEGIGTGYS 850

Query: 189  TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            T IP++N +EI +    L+   E                        +  I +       
Sbjct: 851  TRIPNYNPREIVDNLKRLLAGEEPIEM-------------HPWYKNFKGEIKQVEE---N 894

Query: 249  GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---LIIAKRIPLLEDIRDES 305
             +++               + + E+P +       E + E       K    + + ++  
Sbjct: 895  KYQIDGVIK----KINETTLEIVELPIRTWTQAYKEGVLEPMLHGGEKTPSFISNYKEYH 950

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +     +     +         +     +E  F  N  VL        +   G  +E L
Sbjct: 951  TDTTVRFIVTLTEANMEAAEKIGLLKKFKLEGSFSTNSMVLFDAHG--CLRRYGNAQEIL 1008

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI--DEIIAIIRNEDKPKPVMVSRFSL 423
                E        R + ++  +E     L        ++I   +  E+K K  +++    
Sbjct: 1009 KEFYETKLEFYVKRKEWLEGLLEAESRKLSNQARFILEKIDGKLAIENKSKRDLIAMLKS 1068

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
                 D + + + +    +E  +  +         +    L  +      +   E+   K
Sbjct: 1069 ANFDSDPVKSWQNKQKSVVESEESDASEQETDEGPDFNYILNMNMWSLTKERKDELIANK 1128

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
                      + +T         +  L++
Sbjct: 1129 NKKIAEYQTLKEKTPKMLWLEDIEVFLEE 1157


>gi|328773079|gb|EGF83116.1| hypothetical protein BATDEDRAFT_18312 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1218

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 80/408 (19%), Positives = 152/408 (37%), Gaps = 41/408 (10%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ +V  +SL   +    + ++++    R+IP   DGFKP  R+I+ A  +  L  
Sbjct: 727  PGTYMDHSVTEISLPDFINRELILFSMAD-NARSIPSSVDGFKPGQRKILFACFKRNLKS 785

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++ G V      H HG+QS+  ++V +AQ F       ++   G FG     
Sbjct: 786  E---IKVAQLAGYVAEHSAYH-HGEQSLNATIVNMAQNFIGSNNLGVLEPLGQFGTRLQG 841

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANG 179
            G  AA+ RY    +T +A  +    D    D   TY   + ++ EP  +    P LL NG
Sbjct: 842  GKDAASPRYIFTNLTPLARTVFHPSD----DPLLTYLVDDGQNIEPEWYLPVLPMLLVNG 897

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
              GI  G ++SIP++N ++I E    L+ + E  + ++  +  G            +   
Sbjct: 898  ADGIGTGWSSSIPNYNPRDIVECLHRLMRHEE--LFEIHPWYRG---------FSGKIE- 945

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL--IIAKRIPL 297
             E+    +    +R           S  + +TE+P +       E++        K+   
Sbjct: 946  RETPERYKVTGCIR--------KIDSNTVEITELPIRTWTQSYKEQLEAWLTGTEKQTAW 997

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            ++D ++   +     +             E +     + +   ++  V       ++   
Sbjct: 998  IKDYKEYHTDSKVHFIVTLTDQAMSLAESEGLEKRFKLISSVSVSNIVCFDLEG-RIRKY 1056

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
            DG+           L      +   +       + L      + EII 
Sbjct: 1057 DGVQDIIKDFYELRLSYYQKRKNHMLQTLTFEYERLESKVRFVTEIIT 1104


>gi|297701283|ref|XP_002827646.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like [Pongo
            abelii]
          Length = 1532

 Score =  203 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 694  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 749

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 750  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 808

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 809  TMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 867

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+EI      L+D  E            P  P+      + E +          + + 
Sbjct: 868  FDVREIVNNIRRLMDGEEPL----------PMLPSYKNFKGTIEELAP------NQYVIS 911

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 912  GEVAIL----NSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 967

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  IL+++   R
Sbjct: 968  KFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 1027

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 1028 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1087

Query: 427  QVDA 430
                
Sbjct: 1088 VKAW 1091


>gi|110456319|gb|ABG74700.1| GyrA [Neisseria gonorrhoeae]
          Length = 109

 Score =  203 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 59/109 (54%), Positives = 83/109 (76%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+VIGK HPHGD +VY+++VR+A  F  RY LI GQGNFG++DG +AAA RY
Sbjct: 1   YKKSARIVGDVIGKYHPHGDFAVYNTIVRMAHNFAMRYVLIDGQGNFGSVDGLAAAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           TE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 61  TEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 109


>gi|301605654|ref|XP_002932456.1| PREDICTED: DNA topoisomerase 2-beta [Xenopus (Silurana) tropicalis]
          Length = 1557

 Score =  203 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 158/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 615  LTYNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 670

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 671  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNVSLLQPIGQFGTRLHGGKDAASPRYIF 729

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 730  TMLSPLARLLYPSVDDNLLKFLYD-DNQRVEPEWYIPIIPLVLVNGAEGIGTGWACKLPN 788

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P+      + + +      G+  + + 
Sbjct: 789  YDTREIVNNVKRMLDGLDPY----------PLLPSYKNFKGTIQEL------GQNQYAMS 832

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                V +       I +TE+P +       E++ E +     K   L+ D ++   +   
Sbjct: 833  GEIYVLD----RNTIEITELPVRTWTQVYKEQVLEPMLNGTEKTPSLISDYKEYHTDTTV 888

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +               +  +  ++T    N  VL      + +   +  ILKE+   R
Sbjct: 889  KFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLR 948

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                  R  + +     +      +   +      +I    + +     ++V +   ++ 
Sbjct: 949  LNYYTLRKEWLIGMLGAEAARLNNQARFVLEKIQGKISIENKTKRDLIQMLVQKGFESDP 1008

Query: 427  QVDA 430
                
Sbjct: 1009 VKAW 1012


>gi|161598227|gb|ABX74934.1| gyrase subunit A [Ureaplasma urealyticum]
          Length = 99

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 53/99 (53%), Positives = 74/99 (74%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSAR VG+VIGK HPHGDQ+VY ++VR+AQ F  RY L+ G GNFG+IDGDS
Sbjct: 1   MTHDKPYKKSARWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           AAA RYTEAR+++++  +L+ +D++ VDF   Y+  + E
Sbjct: 61  AAAMRYTEARLSKISYELLKYIDKETVDFVPNYDASEQE 99


>gi|11761922|gb|AAG40244.1|AF303623_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761944|gb|AAG40255.1|AF303634_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761976|gb|AAG40271.1|AF303650_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761978|gb|AAG40272.1|AF303651_1 topoisomerase IV subunit C [Raoultella terrigena]
 gi|11761980|gb|AAG40273.1|AF303652_1 topoisomerase IV subunit C [Raoultella ornithinolytica]
 gi|11761986|gb|AAG40276.1|AF303655_1 topoisomerase IV subunit C [Raoultella planticola]
          Length = 106

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L 
Sbjct: 61  TESRLSKYAELLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILL 106


>gi|325187394|emb|CCA21933.1| predicted protein putative [Albugo laibachii Nc14]
 gi|325190307|emb|CCA24783.1| topoisomerase putative [Albugo laibachii Nc14]
          Length = 1499

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 81/397 (20%), Positives = 159/397 (40%), Gaps = 26/397 (6%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T V+ N+  +     + +  + ++ +    R+IP L DGFKP  R++++   +  L  
Sbjct: 707  PGTHVDYNIADMPYSEFVNKELILFSRADNM-RSIPCLVDGFKPSQRKVLYCCFKRNLRV 765

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++ G V      H HG+ S++ +++ +AQ F       L+S  G FG     
Sbjct: 766  E---IKVAQLAGYVSEHSSYH-HGEASLHGTIINMAQDFIGSNNSNLLSPNGQFGTRILG 821

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  AA+ RY   ++  +A       D   +++ D  + +  EP  +    P +L NG+ G
Sbjct: 822  GKDAASPRYIFTKLEAIAYKFFDPNDNSLLNYLD-EDGQLIEPEWYVPVIPMVLVNGSEG 880

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G ++ IP++N  ++ E   A I     +        + P +      +E R    + 
Sbjct: 881  IGTGWSSFIPNYNPLDLIENLRARIKGEAPTKP------LVPWYRGFTGSIEERSGTRDG 934

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
                   F VR  + VE+       +V+TE+P +       + +  L+    I   ++  
Sbjct: 935  ---DSQAFVVRGIFHVEDDST----LVITELPVKTWTHTYKQFLESLMENDTIKDFKENH 987

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGIL 361
             +S     I + P+            +       +    NM++    GR+ +      I+
Sbjct: 988  TDSKVLFTISMTPEKMQEIVLSPGGIMRKFKLESSISAANMHLFDADGRIQKYDSPHEII 1047

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
              +   R     +R +  +Q +  ++E+L   +   L
Sbjct: 1048 SAFYDIRLAYYGKRKAAMLQKLTDQIEMLANKVKFIL 1084


>gi|113681126|ref|NP_001038656.1| DNA topoisomerase 2-beta [Danio rerio]
 gi|94733296|emb|CAK11279.1| novel protein similar to vertebrate topoisomerase (DNA) II beta
            180kDa (TOP2B) [Danio rerio]
          Length = 1618

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 142/377 (37%), Gaps = 37/377 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            +S    + +  + ++ S   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 713  LSYNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCVKRN---DKREVKVAQLA 768

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       ++   G FG     G  AA+ RY  
Sbjct: 769  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNVNILQPLGQFGTRINGGKDAASPRYIF 827

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A+L+   VD   + F    + +  EP  +    P +L NG  GI  G A  IP+
Sbjct: 828  TMLSPLAKLLFPAVDSSLLKFLYD-DNQKVEPEWYIPIIPMVLVNGAEGIGTGWACKIPN 886

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++++ +            P  P+      +       + LG+  + V 
Sbjct: 887  YDPREIVNNINRMLNHQDPL----------PMLPSYKNFKGT------IHELGQNQYLVS 930

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---LIIAKRIPLLEDIRDESAEDVR 310
                V +       I ++E+P +       E + E       K  PL+ D ++   +   
Sbjct: 931  GEVSVLDKNT----IEISELPVRTWTQAYKESVLEPMLQGTDKTPPLISDYKEYHTDTTV 986

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
              +               +  +  +++    N  VL        M     ++E L    E
Sbjct: 987  KFVVRMTEEKLAQAEAAGLHKVFKLQSSLTCNSMVLFDHMG--CMKRYESVQEILKEFFE 1044

Query: 371  VLFRRSSFRMQAIDRRV 387
            +       R   +   +
Sbjct: 1045 LRLHYYKLRKDWLVGSL 1061


>gi|254047463|gb|ACT63871.1| DNA gyrase subunit A [Escherichia coli]
          Length = 100

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/100 (56%), Positives = 76/100 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            R+ ++A  ++  ++++ VDF D Y+  +  P V P+K P
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIP 100


>gi|93278232|gb|ABF06581.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278240|gb|ABF06585.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 83/98 (84%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ ++  +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLSINSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG+IDGD+AAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|4218221|emb|CAA09762.1| DNA topoisomerase (ATP-hydrolysing) [Homo sapiens]
          Length = 1531

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 157/424 (37%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 693  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 748

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 749  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 807

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 808  TMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 866

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+EI      L+D  E            P  P+      + E +          + + 
Sbjct: 867  FDVREIVNNIRRLMDGEEPL----------PMLPSYKNFKGTIEELAP------NQYVIS 910

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +      S  I ++E+P +       E++ E +     K  PL+ D R+   +   
Sbjct: 911  GEVAIL----NSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 966

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  ++T    N  VL      + +   +  IL++    R
Sbjct: 967  KFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDLFELR 1026

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +II   + + +   V++ R   ++ 
Sbjct: 1027 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDP 1086

Query: 427  QVDA 430
                
Sbjct: 1087 VKAW 1090


>gi|238913907|ref|ZP_04657744.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 338

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 79/244 (32%), Gaps = 8/244 (3%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                V         + +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 4   SHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 63

Query: 577 AGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI 631
              L        G  I  L+ L  N+ I        Y+    + + ++ G       +E 
Sbjct: 64  VYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTALTEF 123

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
                 G   + ++  +++  V   +G D V +     K++ F  D +  M R   GVR 
Sbjct: 124 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG 183

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                      +     EG   +      Y +           R   G +  K   R+G 
Sbjct: 184 IKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGS 242

Query: 750 FLSS 753
            + +
Sbjct: 243 VVGA 246



 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 13/141 (9%)

Query: 615 LVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKLL 671
           + +S +G       ++  A  R  KGK+  ++  E+   +L+V  T D +       +L 
Sbjct: 1   MTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 60

Query: 672 IFSIDQIPEMSRG-KG---VRLQSYKDGGISDVICFKI--CEGLTWIDSAGRSYNRSEND 725
              + Q+PE SRG +G   V L   +       I       EG+    +      +    
Sbjct: 61  WMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTAL 120

Query: 726 LLGWLGKRGG-VGSLVPKGFP 745
                  R    G +      
Sbjct: 121 TEF---SRPRSAGIIAVNLND 138



 Score = 42.8 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 152 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 211

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 212 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 271

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 272 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 308


>gi|558547|emb|CAA57655.1| DNA Gyrase A subunit [Acinetobacter baumannii]
 gi|197725597|gb|ACH73007.1| DNA gyrase subunit A [Acinetobacter baumannii]
          Length = 95

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/95 (55%), Positives = 72/95 (75%)

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RMT+
Sbjct: 1   VGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTK 60

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           +A  +L  +++D VD+ D Y+  +  P V P++ P
Sbjct: 61  LAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVP 95


>gi|93278236|gb|ABF06583.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 82/98 (83%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ ++   A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLSINSKFAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG+IDGD+AAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|164456290|dbj|BAF97648.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456300|dbj|BAF97653.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456326|dbj|BAF97666.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 77/112 (68%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y +LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYHTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|255741569|gb|ACU32445.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 97

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/97 (56%), Positives = 75/97 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
            R+ ++A  ++  ++++ VDF D Y+  +  P V P+
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPT 97


>gi|13508941|emb|CAC11123.2| DNA gyrase subunit A [Bacteroides ovatus]
          Length = 92

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 71/92 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +KKSARIVGEV+GK
Sbjct: 1   MKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPYKKSARIVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
            HPHGD SVY ++VR+AQ +  RYPL+ GQGN
Sbjct: 61  YHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGN 92


>gi|168997711|gb|ACA42553.1| DNA gyrase subunit A [Escherichia coli]
          Length = 89

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/89 (67%), Positives = 77/89 (86%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQ
Sbjct: 1   PDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           PF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 61  PFSLRYMLVDGQGNFGSIDGDSAAAMRYT 89


>gi|119473123|ref|XP_001258508.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
 gi|119406660|gb|EAW16611.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
          Length = 1735

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 88/539 (16%), Positives = 191/539 (35%), Gaps = 75/539 (13%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V+ ++    + +  + ++++  + R+IP + DG KP  R++++      L 
Sbjct: 771  KPGTFLDHSVEKITYTDFINKELILFSMADNQ-RSIPSVVDGLKPGQRKVLYTCFRRNLK 829

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 830  KD---MKVVELAGHVSGMTAYQ-HGDASLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 885

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    D+  + + +  + +  EP V+    P +L NG  
Sbjct: 886  GGQDCASARYIYTRLSPFARRMFHAADDPLLTYNED-DGKKIEPEVYVPVVPLILINGAD 944

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I +    L+D     ++ +  +  G    TG +     +    
Sbjct: 945  GIGTGWSSSIPNYNPEDIVDNLKRLMD--SQPVKPMQPWFRG---FTGEVTALGGD---- 995

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP----L 297
                       R ++       G   + +TE+P +       +K+ E+I A++ P     
Sbjct: 996  -----------RFKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEEIIKAEKTPSFIKD 1044

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM---------------------- 335
             +D    +     I +  KN        +E  F LS                        
Sbjct: 1045 YKDYNTHTKVHFVIQMDEKNIKSAVAEGLEEKFKLSKTIATTNLVAFDPEGRITKYASVD 1104

Query: 336  ---ETRFPLNMNVLSMGRVPQV--------MPLDGILKEWLAHRREVLFRRSSFRMQAID 384
               +  + + +      +  Q+           +      +    +++  +    +   +
Sbjct: 1105 DILKEFYAVRLKFYERRKQYQLSELQKELDKLTNQARFVQMIIDGDLVISKKKKPVLVAE 1164

Query: 385  RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +    K        +         E++          +  +  D +L + L SL     
Sbjct: 1165 LKKHGFKAFPKVIDAVKAGEDAPVVEEEEDESGNDETEVLSSAYDYLLGMPLWSLTHERV 1224

Query: 445  YQIKSELDNLLAEKEKIDSL------LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
             +++ ++     E + +  L              N+   ++ +      K  ++GRR +
Sbjct: 1225 EKLRRQIGEKEVEMDALIKLSKEDIWKRDLDDFINEWRFQLEDEARRQRKVANMGRRTS 1283


>gi|42718131|gb|AAS38489.1| DNA gyrase A subunit [Haemophilus influenzae]
 gi|42718133|gb|AAS38490.1| DNA gyrase A subunit [Haemophilus influenzae]
 gi|42718135|gb|AAS38491.1| DNA gyrase A subunit [Haemophilus influenzae]
          Length = 100

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 52/99 (52%), Positives = 71/99 (71%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ 
Sbjct: 1   TANKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAP 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P
Sbjct: 61  AAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIP 99


>gi|302844478|ref|XP_002953779.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f. nagariensis]
 gi|300260887|gb|EFJ45103.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f. nagariensis]
          Length = 1126

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 162/446 (36%), Gaps = 41/446 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++++ + +S    + +  + ++ +   +R+IP++ DG KP  R+I+ A  +  L  
Sbjct: 653  PGTYLDQSAEKISYADFINKELILFSRAD-LDRSIPNVLDGLKPGQRKIMFACFKRNLKK 711

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++   V      H HG+QS+  ++V LAQ F       L+   G FG     
Sbjct: 712  D---IKVAQLSAYVAEHSAYH-HGEQSLASTIVNLAQDFVGSNNINLLHPSGQFGTRLQG 767

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  AA+ RY   R+ ++   +    D+  + +      +  EP  +    P +L NG  G
Sbjct: 768  GKDAASARYIYTRLEKLTRHLFNEHDDVLLKY-LNEEGQSIEPEWYLPILPTVLVNGAEG 826

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T IP++N ++I      L++  E     L  +  G    TG I           
Sbjct: 827  IGTGWSTFIPNYNPRDIIANLRRLLNGEEQDP--LHPWYRG---FTGTITEVP------- 874

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---IIAKRIPLLE 299
            ++ G   + V           G   I VTE+P +       E +  L         PL+ 
Sbjct: 875  HKSGSRSYVVGGLVA----QTGPNTIEVTELPVRKWTQDYKEFLETLLRPQDKDEAPLIA 930

Query: 300  DIRD-ESAEDVRIVLFPKNRSLDPDLLME--------SIFMLSDMETRFPLNMNVLSMGR 350
            D  +  S  +V  V+      LD  L               ++           ++   +
Sbjct: 931  DYHEHHSDSNVHFVVELLPGKLDELLATPGGLEAKFKLQAKVTTSNMMLFQKDGIIKHYQ 990

Query: 351  VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             P+ +      +  L +  +       F      R    ++ +L       E+    R +
Sbjct: 991  SPEAIIA-EFFELRLDYYEKRRIAMLRFAQMDQMRADNKVRFILAVVHGKLEVRNRKRVD 1049

Query: 411  DKPKPVMVSRFSLTENQVDAILNLRL 436
             +          +++      +NL +
Sbjct: 1050 IEKDLEAQGFDRMSKTNTATKVNLSI 1075


>gi|327309598|ref|XP_003239490.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
 gi|326459746|gb|EGD85199.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
          Length = 1674

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/406 (19%), Positives = 161/406 (39%), Gaps = 44/406 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 773  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 831

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 832  RD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 887

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 888  GGSDSASARYIYTRLSPFARRLFHQADEPLLVNNVD-----DGKVIEPETYVPVVPLILI 942

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +E+ +    L+   E+   K   +       TG        
Sbjct: 943  NGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPW-FRGFKGEVTGSGDRYKFS 1001

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             I++                      G   + +TE+P +       +K+ E+I A+++P 
Sbjct: 1002 GIIK--------------------QTGDNEVEITELPIRTWTQDFKDKLEEIIKAEKVPS 1041

Query: 298  L-EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQV 354
              +D +D +       +           L E +     +  +   +  V     GR+ + 
Sbjct: 1042 FIKDYKDYNTHTNVHFVIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRY 1101

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
               + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 1102 ETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1147


>gi|42718129|gb|AAS38488.1| DNA gyrase A subunit [Haemophilus influenzae]
          Length = 100

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/99 (51%), Positives = 71/99 (71%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ 
Sbjct: 1   TANKKYVKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAP 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P
Sbjct: 61  AAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIP 99


>gi|213051497|ref|ZP_03344375.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 520

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 106/461 (22%), Positives = 184/461 (39%), Gaps = 61/461 (13%)

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I
Sbjct: 2   LRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDI 60

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----- 415
           +  ++ HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P       
Sbjct: 61  ISAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAAL 120

Query: 416 --------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                           V   ++ LTE Q  AIL+LRL+ L  LE
Sbjct: 121 ISRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLE 180

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             ++  E   LL +  ++  +L S  +    I  E+  +++ F        RRT   E++
Sbjct: 181 HEKLLDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EIT 232

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
                   + +I +E + V +S++G+          + +      SA   KE D +   L
Sbjct: 233 ANSADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLL 292

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDS 610
            A+T D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        Y+ 
Sbjct: 293 VANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEE 352

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRK 669
              + + ++ G       +E       G   + ++  +++  V   +G D V +     K
Sbjct: 353 GVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGK 412

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           ++ F  D +  M R   GVR            +     EG 
Sbjct: 413 VVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGA 453


>gi|164456316|dbj|BAF97661.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 77/112 (68%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y +LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYYTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|301110016|ref|XP_002904088.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
 gi|262096214|gb|EEY54266.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
          Length = 1505

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 83/388 (21%), Positives = 159/388 (40%), Gaps = 29/388 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T V+ +V  +     + +  + ++++    R+IP + DGFKP  R+++    +  L 
Sbjct: 729  EPGTYVDYDVDEMGYTEFVNKELILFSMADNI-RSIPSVMDGFKPSQRKVLFCCFKRNLR 787

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++ G V      H HG+ S+   +V +AQ F       L+S  G FG    
Sbjct: 788  AE---LKVAQLAGYVSEHSAYH-HGEASLQGCIVNMAQDFVGSNNIHLLSPIGQFGTRLM 843

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY    + Q+  LI   +D D + +  + + +  EP  +    P +L NG+ 
Sbjct: 844  GGKDAASARYIFTNLEQLTRLIYHPLDNDCLKY-LSEDGQSIEPEWYIPIIPMVLVNGSD 902

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++S+P++N  +I +    +I+  EI+          P +      +  + +   
Sbjct: 903  GIGTGWSSSVPNYNPLDIIKGLRQMINGEEIAPLT-------PWYRGFTGHIVEKANSRG 955

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            +     G + V+  + V +       +VV+E+P +       + +  L+ A  I   ++ 
Sbjct: 956  T---DTGNYIVQGLYEVTDDST----LVVSELPVKSWTQTYKQFLEGLLDAGTIKDFKEN 1008

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDG 359
              +      I + PK  S D       I     +E+    +   L    G + +      
Sbjct: 1009 HTDVKVLFTITMEPKALS-DVTKAPGGIVKKFKLESSLSTSNMHLFDAAGHIKKYENPKE 1067

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            I+ E+   R E   RR    +Q +  ++
Sbjct: 1068 IMAEFYGIRLEYYGRRKKAMLQKLQDQI 1095


>gi|226294840|gb|EEH50260.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb18]
          Length = 1760

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 156/435 (35%), Gaps = 47/435 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++   + ++    + +  + ++++    R+IP + DG KP  R++++   +  + 
Sbjct: 846  KPGTFLDHTTEEITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFKRNVR 904

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 905  KD---IKVVELAGYVSGMTAYQ-HGDVSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 960

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  I    DE  + +    +    EP ++    P +L NG  
Sbjct: 961  GGSDSASARYIYTRLSPFARRIFHPADEPLLTYNVD-DGHTIEPEIYVPVVPLVLINGAD 1019

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N ++I      L+D   +   +                        E
Sbjct: 1020 GIGTGWSTSIPNYNPEDIVANLKCLMDGEPLVPMQP--------------WFRGFTG--E 1063

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
               LG   ++   R        G   + +TE+P +       +++ E+I A+++P   +D
Sbjct: 1064 VVSLGGERYKFSGRIS----QVGENEVEITELPIRCWTQDFKDRLEEIIKAEKVPSFIKD 1119

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
             +D +       +   +       + E +     +      +  V               
Sbjct: 1120 YKDYNTHTKVHFVIQLDEKHAAKAIAEGLEEKFKLSKTIATSNLVAFD---------PEG 1170

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVE-----ILKGLLIAYLNIDEIIAIIRNEDKPKP 415
                     ++L    S R++  ++R         + +      I E    + N  K   
Sbjct: 1171 RITKYDSPEDILREFYSVRIKFYEKRKMPLWSLTQERVEKLRRQIGEKEIEVDNLIKLSK 1230

Query: 416  VMVSRFSLTENQVDA 430
              + R  L +   + 
Sbjct: 1231 EDIWRKDLDDFIAEW 1245


>gi|331251443|ref|XP_003338318.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309317308|gb|EFP93899.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1164

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 82/406 (20%), Positives = 155/406 (38%), Gaps = 38/406 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T +++NV  ++    + +  + ++++    R+IP + DGFKP  R+++ A  +  L 
Sbjct: 736  EPGTHLDQNVSQITYTEFINKELILFSMADNI-RSIPSMVDGFKPGQRKVLFACFKRKLK 794

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++ G        H HG+ S+  ++V LAQ F       ++S  G FG    
Sbjct: 795  AE---IKVAQLGGYCSEHSAYH-HGEASLTQTIVGLAQNFVGSNNINVLSPNGQFGTRAS 850

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY    + ++  +I    D++ +++  T +    EP  +    P +L NG+S
Sbjct: 851  GGKDAASARYIFTNVEKITRVIFPPADDNVLNY-LTDDGTQIEPEWYIPILPMVLVNGSS 909

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++ IP++N  +I       + N  +                           + 
Sbjct: 910  GIGTGWSSDIPNYNPVDIVNNLRRRLANEPMEPMHP--------------WFRGFTGQIT 955

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI-----P 296
            S   G+  ++V   W           I +TE+P +V      E+I   I +         
Sbjct: 956  SEAPGK--YKVLGEW----DQPDEDTIEITELPVRVWNQSYKEQIEAWINSTDKIPALVK 1009

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
               +   E+     I L  + +       +E +F LS         +     G++ +   
Sbjct: 1010 DYREYHTETTVHFIISLTERGKDAIKKEGIEKVFKLS-ANLSITNMVCFDPSGKIKKYST 1068

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
             + IL ++   R     +R  + +  +    E L       L I E
Sbjct: 1069 PEQILDDFYDVRLAYYQKRKEYLVNDLTLMYERLSNQARFVLMIIE 1114


>gi|145353138|ref|XP_001420882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581118|gb|ABO99175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1292

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 132/355 (37%), Gaps = 38/355 (10%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++   + +     + +  + ++ + +  R+IP + DGFKP  R+++ +  +  L 
Sbjct: 664 EPGTFLDMTGEDIRYDEFINKELILFSRADLL-RSIPSMVDGFKPSQRKVLFSCFKRKLK 722

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                 K A++ G V      H HG+ S+  ++V LAQ F       L+   G FG    
Sbjct: 723 SD---IKVAQLSGYVSEHSAYH-HGEASLAMTIVNLAQDFVGSNNINLLVPSGQFGTRLQ 778

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLAN 178
            G   A+ RY   R+ +V   +    D    D    Y   + +  EP  +    P +L N
Sbjct: 779 GGKDHASPRYIFTRLHEVCRAMFPECD----DALLNYLDEDGQRIEPDYYYPVLPLVLVN 834

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GI  G +TSIP+ N +++  A + L+   E  ++                    + S
Sbjct: 835 GAEGIGTGWSTSIPNFNPRDLI-ANIRLVLEGESPVQM------------HPWYRHFKGS 881

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL---IEKIAELIIAKRI 295
           I E    G   + V   + + +       + VTE+P +   S     +E++         
Sbjct: 882 ITEELVKGETRYNVTGSYNIRDE----CTLEVTELPLRSWTSDYKEFLEEMLVPKTKTAK 937

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
           P + D ++   +     +               I     + T+  +    L   +
Sbjct: 938 PFITDYKEYHTDSTVHFVITMPPENLAAAQASGIEKKFKLSTKLNITNMHLFNEQ 992


>gi|225450069|ref|XP_002274267.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1489

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 132/369 (35%), Gaps = 27/369 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T +++  K +     + +  + ++++   +R+IP + DG KP  R+I+    +     
Sbjct: 665  PGTYLDQKEKLIKYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFCSFKRNFIK 723

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
             A   K A+  G V      H HG+QS+  +++ +AQ F       L+   G FG     
Sbjct: 724  EA---KIAQFSGYVSEHSAYH-HGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRHQG 779

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   A+ RY   R++ +   +    D+  +D+    + +  EP  +    P +L NG+ G
Sbjct: 780  GKDHASARYIYTRLSPITRFLFPKDDDILLDY-LNEDGQSIEPTWYVPTIPMVLVNGSEG 838

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G ++SIP++N ++I      L++   +                            + 
Sbjct: 839  IGTGWSSSIPNYNPRDIIANVRRLLNGEMMEPMDPWY-----------RGFRGTIEKTDP 887

Query: 243  YRLGRGGFRVRARW-CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
             +    G+ V+     V E       + V +          +E I       + P ++D 
Sbjct: 888  TKQESVGYTVKGIIEEVNETTLRISELPVRKWTQDY--KEFLESIMTGNDKIKDPFIKDY 945

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV-LSMGRVPQVMPLDGI 360
            ++ + +         +         E +     + T+   +           +       
Sbjct: 946  KEHNDDTTVHFEVIMSEENLLMAKQEGLLQKFKLTTKISTSNMHLFDSNGTIKKYETPEQ 1005

Query: 361  LKEWLAHRR 369
            + E   H R
Sbjct: 1006 ILEEFFHLR 1014


>gi|32478664|gb|AAP83584.1| DNA-topoisomerase II [Physarum polycephalum]
          Length = 1498

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 87/494 (17%), Positives = 180/494 (36%), Gaps = 41/494 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             V+  VK ++    +++  + +  +    RAIP + DG KP  R++++A  + GL     
Sbjct: 1001 FVDYTVKNLTYSDFVDKELVQFCRAA-NARAIPSVVDGLKPGQRKVLYASFKRGLTQE-- 1057

Query: 72   FKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V      H HG++S++ ++V +AQ F      PL+   G FG     G  
Sbjct: 1058 -MKVAQLAGYVAEHTAYH-HGEESLHGTIVNMAQDFVGANNLPLLLPSGQFGTRLQGGKD 1115

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANGTSG 182
            AA+ RY   ++  +   I   +D    D    Y   + +  +P  F    P +L NG+ G
Sbjct: 1116 AASARYIFTKLAPLTRTIFPDLD----DPVLNYLEGDGDRIQPEFFAPIIPMVLVNGSEG 1171

Query: 183  IAVGMATSIPSHNVQEICEA-ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            + +G  TSIP +N   + +     L + P   +    +   G    T     ++   I  
Sbjct: 1172 LGMGWRTSIPMYNPTNLIDNLLRLLHNEPMEPLTPWYKGFKGSVELTPPFTFKTYGVIEP 1231

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            +    +      +   V +       ++ T +  +  K  L                 + 
Sbjct: 1232 TK---KEHIFKISELPVRKWTNDYKELLTTYVKPEKGKPTL-------------KDFSEY 1275

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ-VMPLDGI 360
              +   D  +       +       + +  L  +E+ F + M +       +  M    I
Sbjct: 1276 NTDQKVDFEVTFPRGAEAKPIPQNAQDLLKLLRLESTFFMKMVLFDRHGAIKEYMDPLDI 1335

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            ++++   R E   +R + R + ++   + L   L     +      +    K +      
Sbjct: 1336 IRDFFEVRMEYYAKRKAAREKVLENEAKRLGDKLKFVKLVISGSLKLFGRSKAELRQDLV 1395

Query: 421  FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             S   N  + +L++ L  L K +  Q+         +++  +               E+R
Sbjct: 1396 KSGLGNGYENLLSIALDDLTKEKTEQLAHA-----KQRKDAELAETRRTSAAAMWEHELR 1450

Query: 481  EVKEIFSKSTDLGR 494
             +++   K+ +   
Sbjct: 1451 ALRDKLDKAHEKKD 1464


>gi|311352804|gb|ADP93587.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352806|gb|ADP93588.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352808|gb|ADP93589.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352810|gb|ADP93590.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352816|gb|ADP93593.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352822|gb|ADP93596.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352824|gb|ADP93597.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352826|gb|ADP93598.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352828|gb|ADP93599.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352830|gb|ADP93600.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352832|gb|ADP93601.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352834|gb|ADP93602.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352836|gb|ADP93603.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352838|gb|ADP93604.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352840|gb|ADP93605.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352842|gb|ADP93606.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352846|gb|ADP93608.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352852|gb|ADP93611.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352856|gb|ADP93613.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352858|gb|ADP93614.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352862|gb|ADP93616.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352864|gb|ADP93617.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352866|gb|ADP93618.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352868|gb|ADP93619.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352870|gb|ADP93620.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352878|gb|ADP93624.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352880|gb|ADP93625.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352882|gb|ADP93626.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352884|gb|ADP93627.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352886|gb|ADP93628.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352894|gb|ADP93632.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352896|gb|ADP93633.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352898|gb|ADP93634.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352900|gb|ADP93635.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352904|gb|ADP93637.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352906|gb|ADP93638.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352908|gb|ADP93639.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352910|gb|ADP93640.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352912|gb|ADP93641.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352914|gb|ADP93642.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352916|gb|ADP93643.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352918|gb|ADP93644.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352920|gb|ADP93645.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352922|gb|ADP93646.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352924|gb|ADP93647.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352926|gb|ADP93648.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352928|gb|ADP93649.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352930|gb|ADP93650.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352932|gb|ADP93651.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352934|gb|ADP93652.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352936|gb|ADP93653.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352938|gb|ADP93654.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352940|gb|ADP93655.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352942|gb|ADP93656.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352944|gb|ADP93657.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352946|gb|ADP93658.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352948|gb|ADP93659.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352950|gb|ADP93660.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352952|gb|ADP93661.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352954|gb|ADP93662.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352956|gb|ADP93663.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352960|gb|ADP93665.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352962|gb|ADP93666.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352966|gb|ADP93668.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352968|gb|ADP93669.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352970|gb|ADP93670.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352972|gb|ADP93671.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352974|gb|ADP93672.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352978|gb|ADP93674.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352980|gb|ADP93675.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352984|gb|ADP93677.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352988|gb|ADP93679.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352994|gb|ADP93682.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352996|gb|ADP93683.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352998|gb|ADP93684.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353004|gb|ADP93687.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353006|gb|ADP93688.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353008|gb|ADP93689.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353010|gb|ADP93690.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353014|gb|ADP93692.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353016|gb|ADP93693.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353022|gb|ADP93696.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353024|gb|ADP93697.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353026|gb|ADP93698.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353028|gb|ADP93699.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353042|gb|ADP93706.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353044|gb|ADP93707.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353048|gb|ADP93709.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353050|gb|ADP93710.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353052|gb|ADP93711.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353054|gb|ADP93712.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353056|gb|ADP93713.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353058|gb|ADP93714.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353062|gb|ADP93716.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353064|gb|ADP93717.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353066|gb|ADP93718.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353068|gb|ADP93719.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353070|gb|ADP93720.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353072|gb|ADP93721.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353074|gb|ADP93722.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353076|gb|ADP93723.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353078|gb|ADP93724.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353080|gb|ADP93725.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 96/234 (41%), Positives = 151/234 (64%), Gaps = 3/234 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +   +
Sbjct: 120 RAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRM 178

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    R  +P++ +  ++  + M+  F + M  L     PQV+ L  +L  ++ 
Sbjct: 179 VIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQVLNLKQVLVHYIN 231


>gi|15593976|emb|CAC11124.2| DNA gyrase subunit A [Bacteroides thetaiotaomicron]
          Length = 92

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 71/92 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +KKSARIVGEV+GK
Sbjct: 1   MKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPYKKSARIVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
            HPHGD SVY ++VR+AQ +  RYPL+ GQGN
Sbjct: 61  YHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGN 92


>gi|18369818|dbj|BAB84104.1| DNA topoisomerase II [Penicillium citrinum]
          Length = 1100

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 85/402 (21%), Positives = 164/402 (40%), Gaps = 35/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V  +S    + +  + ++++  + R+IP + DG KP  R++++A     L 
Sbjct: 647  KPGTYLDHSVSKISYTDFINKELILFSMADNQ-RSIPSVVDGLKPGQRKVLYACFRRNLK 705

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HG+ S+  ++V LAQ F        +   GNFG+   
Sbjct: 706  KD---MKVVELAGLVSGMTAYQ-HGETSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 761

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  I    DE  + + +  + +  EP  +    P +L NG  
Sbjct: 762  GGSDCASARYIYTRLSPFARKIFHTADEPLLTYNED-DGKKIEPETYMPVVPMVLINGAD 820

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N +++      L+      IE +  +  G    TG ++    +    
Sbjct: 821  GIGTGWSSSIPNYNPEDVVNNLKRLM--KGEPIEPMQPWFRG---FTGEVVNMGGD---- 871

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
                       R ++       G   + +TE+P +       +K+ ++I A+++P   +D
Sbjct: 872  -----------RFKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEDIIKAEKVPSFIKD 920

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
             +D +  D    +   +       L E +     +      +  V     GR+ +   +D
Sbjct: 921  YKDYNTHDKVHFVIQLDEKNMKAALSEGLEEKFKLTKSIATSNLVAFDPEGRITKYATVD 980

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             ILKE+   R +   RR   ++  + + +E L         I
Sbjct: 981  DILKEFFTVRLKYYERRKQHQLSELQKELEKLSNQARFVQMI 1022


>gi|26984133|gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum]
 gi|26984168|gb|AAN85208.1| DNA topoisomerase II [Nicotiana tabacum]
          Length = 1482

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/406 (16%), Positives = 154/406 (37%), Gaps = 29/406 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T +++  K +S    + +  + ++++   +R+IP + DG KP  R+I+    +    
Sbjct: 660  EPGTHLDQKEKYISYTEFVNKELILFSMAD-LQRSIPSMLDGLKPGQRKILFCAFKRNFV 718

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
              A   K ++  G V      H HG+QS+  +++ +AQ +       L+   G FG    
Sbjct: 719  KEA---KVSQFSGYVSEHSAYH-HGEQSLSSTIIGMAQDYVGSNNVNLLQPNGQFGTRNM 774

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++ +A  +    D+   D+    + +  EP  +    P +L NG+ 
Sbjct: 775  GGKDHASSRYIYTRLSPIARFLFPKEDDTIHDY-LNEDGQYIEPTWYVPIVPMVLINGSE 833

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++ +P++N +++      L+++  +                     +  +  +E
Sbjct: 834  GIGTGWSSYVPNYNPRDLVANVRRLLNDEPMEPMDP--------------WYKGFKGTIE 879

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV-QKSRLIEKIAELIIAKRIPLLED 300
                   G        +EEV   +  I    +        + +E +       + P +++
Sbjct: 880  KTATKEAGATYTVTGIIEEVNETTLRISELPVRRWTEDYKQFLESMTVSNDKAKDPFIKE 939

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLD 358
            +R    E+        +         E +     + T    +   L      + +    +
Sbjct: 940  VRAYGDENSVCFEVIMSEENLILAQQEGLLKKFKLATTISTSNMHLFDSNGKIKKYDNPE 999

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
             IL+E+   R E   +R    ++ ++  +  ++  +   L + ++ 
Sbjct: 1000 DILEEFYHVRLEYYEKRKKALLEILELELLRIENKVKFILGVVKVE 1045


>gi|255742424|gb|ACU32466.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 74/96 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            R+ ++A  ++  ++++ VDF D Y+  +  P V P
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMP 96


>gi|311352812|gb|ADP93591.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352814|gb|ADP93592.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352818|gb|ADP93594.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352820|gb|ADP93595.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352844|gb|ADP93607.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352848|gb|ADP93609.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352850|gb|ADP93610.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352860|gb|ADP93615.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352872|gb|ADP93621.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352874|gb|ADP93622.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352876|gb|ADP93623.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352888|gb|ADP93629.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352890|gb|ADP93630.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352892|gb|ADP93631.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352902|gb|ADP93636.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352958|gb|ADP93664.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352964|gb|ADP93667.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352976|gb|ADP93673.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352982|gb|ADP93676.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352986|gb|ADP93678.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352990|gb|ADP93680.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352992|gb|ADP93681.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353000|gb|ADP93685.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353002|gb|ADP93686.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353012|gb|ADP93691.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353030|gb|ADP93700.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353032|gb|ADP93701.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353034|gb|ADP93702.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353036|gb|ADP93703.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353038|gb|ADP93704.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353040|gb|ADP93705.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353046|gb|ADP93708.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353060|gb|ADP93715.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 95/234 (40%), Positives = 151/234 (64%), Gaps = 3/234 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +   +
Sbjct: 120 RAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRM 178

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++ 
Sbjct: 179 VIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYIN 231


>gi|323255023|gb|EGA38813.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
          Length = 311

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 69/204 (33%), Gaps = 8/204 (3%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDST 611
           A+T D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        Y+  
Sbjct: 17  ANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEG 76

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKL 670
             + + ++ G       +E       G   + ++  +++  V   +G D V +     K+
Sbjct: 77  VNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKV 136

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           + F  D +  M R   GVR            +     EG   +      Y +        
Sbjct: 137 VRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYP 195

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              R   G +  K   R+G  + +
Sbjct: 196 TKSRATQGVISIKVTERNGSVVGA 219



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 125 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 184

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 185 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 244

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 245 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 281


>gi|269860440|ref|XP_002649941.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
 gi|220066628|gb|EED44103.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
          Length = 1159

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 94/536 (17%), Positives = 197/536 (36%), Gaps = 58/536 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T +++++  +++R  + +  + ++++    R+IP + DG KP  R++I +  +  L 
Sbjct: 633  EPGTFLDQSMSNITVRDFVNKELILFSMADNI-RSIPSVIDGLKPGQRKVIFSCFKRNLK 691

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++VG V      H HG+ S+  +++ LA  F       L+   G FG+   
Sbjct: 692  TE---IKVAQLVGYVSEHSAYH-HGEASLAATIINLAHDFVGSNNINLLLPLGQFGSRLL 747

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY    +  ++ LI    D   ++ +   +    EP  +    P +L NGT 
Sbjct: 748  GGKDSASPRYIFTNLNPLSRLIFHEHDIPILESQIE-DNLVIEPTYYVPIIPMVLVNGTD 806

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IP+HN  ++ +    L++N E                       + +  + 
Sbjct: 807  GIGTGWSTNIPNHNPLDLIKNIKRLLNNQEPEEM--------------IPYYRNYKGTIT 852

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                G+  +    +            I V E+P  V      E + + I    I   +D 
Sbjct: 853  KINAGK--YISCGKV---FENINKKEINVVELPIGVWTQAYKEYLDQAIADNVIKSFKDY 907

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDG 359
              +   D+ I              M +    S + T    N  V       + +      
Sbjct: 908  STDKTIDILIH-------------MNNNEFSSKLTTSISTNNMVCFDRNGKIKKYHNTLE 954

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL--NIDEIIAIIRNEDKPKPVM 417
            ILK++   R E   +R  +R++ +   +  LK  +          II   R  ++    +
Sbjct: 955  ILKDFYEVRLEFYNKRKIYRLKLLADELNKLKNKVRFIEGVITGSIIITQRPLNEIILEL 1014

Query: 418  VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              +     +  + +L++++ SL K +  +++ E +N   E           + +   I  
Sbjct: 1015 ERKEFTRYDNYEYLLDMKISSLTKEKINKLREEYNNKNIEYN---------ELKNKSIKN 1065

Query: 478  EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
               E  + F K            + ++ ++   +    E     ++++        
Sbjct: 1066 LWFEDLDKFEKEYIKVMEAENI-KYNKDNQKRYKHKSNEFIEKNILMTKMLKKNPN 1120


>gi|72007795|ref|XP_783546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
            purpuratus]
 gi|115967910|ref|XP_001184546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
            purpuratus]
          Length = 1448

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 87/516 (16%), Positives = 193/516 (37%), Gaps = 41/516 (7%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++ K VS    + +  + ++ +   ER+IP + DG KP  R+++    +    +   
Sbjct: 711  LYQKDTKKVSYNEFINKELVLFSNAD-NERSIPSMVDGLKPGQRKVLFTCFK---KYEKK 766

Query: 72   FKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V  +   H HG+QS+  +++ LAQ F       L+   G FG     G  
Sbjct: 767  EIKVAQMAGAVSELSAYH-HGEQSLMSTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKD 825

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA+ RY   +++ +A L+    D+  + +    + +  EP  +    P +L NG+ GI  
Sbjct: 826  AASARYIFTQLSPLARLVFPHHDDPLLSYMYD-DNQRIEPEFYAPIIPMVLINGSEGIGT 884

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
            G +T I +++++E+      L+   E            P  P+      + E        
Sbjct: 885  GWSTRICNYDIREVVANVRRLLAGDEPV----------PMLPSYKNFKGTIEE------F 928

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIR 302
                F V     V +       + +TE+P +V      E + E ++    K  P + D +
Sbjct: 929  EPNRFAVNGEISVVDDN----SVEITELPIRVWTQNYKESVLENMVYGTDKVKPSISDYK 984

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS---MGRVPQVMPLDG 359
            +   +     +   N         E +  +  ++T F     ++     G + +   ++ 
Sbjct: 985  EYHTDTTVKFVVKMNEDRLLRGEEEGLHKMFKLQTTFSQANLMVLYDRHGCIRRYDNVEE 1044

Query: 360  ILKEWLAHRREVLFRRSSFRMQAID---RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
            IL+E+   R E+  +R ++    ++    ++      ++  ++   +I           +
Sbjct: 1045 ILREFFTLRMELYHKRKAYLEGILEAESSKLNNQARFIMEKIDGKVVIENKSKSSMISQL 1104

Query: 417  MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                +     +       +     +       S+     +  +    L  S      +  
Sbjct: 1105 TSRGYDSDPVKAWKEAQQKSVEEEEDSFDDAASDSSEAGSGPDYNYLLGMSLWSLTKEKK 1164

Query: 477  CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
             ++ + ++  +    L RR+T     +    A + +
Sbjct: 1165 NDLLKQRDEKAAELSLLRRKTASMLWTDDLNAFMAE 1200


>gi|11761936|gb|AAG40251.1|AF303630_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761954|gb|AAG40260.1|AF303639_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761964|gb|AAG40265.1|AF303644_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761968|gb|AAG40267.1|AF303646_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761972|gb|AAG40269.1|AF303648_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L 
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|71018835|ref|XP_759648.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
 gi|46099406|gb|EAK84639.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
          Length = 1518

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 155/387 (40%), Gaps = 38/387 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ N   +     + +  + ++++    R+IP   DG KP  R++++ M +   + 
Sbjct: 754  PGTYLDHNTDRIPYADFINKELILFSMADNL-RSIPSAIDGLKPGQRKVMYVMFDRKSNS 812

Query: 69   GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K   +VG V+G+   H HG+ ++  ++V LAQ F       L+  +G FG     
Sbjct: 813  E---LKVNTLVGNVLGQAAYH-HGEAALSMTIVGLAQNFVGSNNVNLLEPRGQFGTRLLG 868

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  AA+ RY    + ++A  +    D+  +D+ +  + +  EP  +    P +L NG  G
Sbjct: 869  GKDAASGRYIFTALPKIARALFPATDDALLDYLED-DGQKVEPHWYIPVVPQVLLNGAEG 927

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +TS+P++N  EI                 L   + G D               + 
Sbjct: 928  IGTGWSTSVPNYNPHEIVA--------------NLRRRMAGEDVVPMKPWYRGFNG--DV 971

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI-----PL 297
               G G F++  R    +         +TE+P +   S   E + E I++          
Sbjct: 972  EEFGPGRFKISGRVTQIDEKTYE----ITELPIRTWTSNYKELLEERIVSSDKIPATIKD 1027

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             ++   ES  +  + L  K ++   D  +E+ F LS  +      +     G++ +    
Sbjct: 1028 YKEYHTESTVNFIVELTAKGQAEIADKGVEAFFKLS-CQISTTNMVLFDQDGKIKKYTSA 1086

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAID 384
            + IL+E+   R     +R  + +  + 
Sbjct: 1087 EEILEEFYLLRLSYYQKRKEYLVDQLK 1113


>gi|11761966|gb|AAG40266.1|AF303645_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
          Length = 106

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 73/106 (68%), Gaps = 1/106 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L 
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|11761956|gb|AAG40261.1|AF303640_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 75/106 (70%), Gaps = 1/106 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L 
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|328550504|ref|NP_001127186.1| DNA topoisomerase 2-beta [Pongo abelii]
 gi|55725810|emb|CAH89685.1| hypothetical protein [Pongo abelii]
          Length = 1620

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 83/476 (17%), Positives = 170/476 (35%), Gaps = 35/476 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 709  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 764

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 765  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 823

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A  +   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 824  TMLSSLAR-LFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 881

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 882  YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 925

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 926  GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 984

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 985  VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 1044

Query: 372  LFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  + +     +      +   I      +I    R++     ++V R   ++    
Sbjct: 1045 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKA 1104

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                 + ++  + E      +  +        D         W+    ++ E+ + 
Sbjct: 1105 W-KEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQ 1159


>gi|311352854|gb|ADP93612.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 95/234 (40%), Positives = 151/234 (64%), Gaps = 3/234 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +   +
Sbjct: 120 RAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRI 178

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++ 
Sbjct: 179 VIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYIN 231


>gi|311353018|gb|ADP93694.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353020|gb|ADP93695.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 95/234 (40%), Positives = 151/234 (64%), Gaps = 3/234 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMAYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +   +
Sbjct: 120 RAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRI 178

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++ 
Sbjct: 179 VIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYIN 231


>gi|55773630|dbj|BAA28664.2| typeII DNA topoisomerase [Emericella nidulans]
          Length = 1709

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 87/504 (17%), Positives = 180/504 (35%), Gaps = 40/504 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N +T ++ +V  +S    +    + ++++    R+IP + DG KP  R++++ + +  + 
Sbjct: 761  NPDTFMDHSVAKISYTDFINNELIQFSMADNL-RSIPSMVDGMKPGQRKVMYTVMKRNIK 819

Query: 68   FGAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G+V  +   H HGD S++ +++ LAQ F        +   GNFG+   
Sbjct: 820  KD---VKVLDLTGQVFSLTAYH-HGDASMHQTIIGLAQDFVGSNNVNTLEPSGNFGSRLK 875

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  A++ RY   R++  A  I    D+  + + +  + ++ EP V+    P +L NG  
Sbjct: 876  GGADASSARYIHTRLSPFARKIFHPHDDPILKYLED-DGKEIEPWVYVPVVPMILINGAD 934

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N ++I +    +I   EI   +                 +  +   E
Sbjct: 935  GIGTGWSTSIPNYNPEDIVDNLKRMIRGEEIKPMQP--------------WFKGFKG--E 978

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
              +LG   ++                + VTE+P +      I K+ E+I A + P L   
Sbjct: 979  VTQLGPDKYKFSGLIKQVSDKE----LEVTELPIRTWTQDFINKLEEMIKADKAPSLIKD 1034

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
              +   +  + L  +    +    +   F+    +    +    L           +G +
Sbjct: 1035 YKDYNTNSDVHLVLQLDEKNVKEPLTQEFLEEKFKLSKTIATTNLVAFN------AEGQM 1088

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
             ++      +             R+   L  L I    +      +        V+  + 
Sbjct: 1089 TKYPNVEAILEEFYRLRLKFYGKRKQHQLDQLQIELEKLTNQARFVHMIIDGDLVVSKKK 1148

Query: 422  SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
                  V  + +L  +   K  +     E + ++   E  D+      Q        +  
Sbjct: 1149 K--SVLVKELDSLGFKRFNKTADAAKAGETEKVIEASEDEDTEAQDDTQDLAHAFDYLLG 1206

Query: 482  VKEIFSKSTDLGRRRTTFCEVSRA 505
            +         + + R    E    
Sbjct: 1207 MAIWSLTQERVEKLRRQIGEKEHE 1230


>gi|313192252|emb|CBY05934.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 105

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 55/99 (55%), Positives = 77/99 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIG+ HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGEYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+   
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGNM 102


>gi|18369816|dbj|BAB84103.1| DNA topoisomerase II [Penicillium chrysogenum]
          Length = 1423

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 100/534 (18%), Positives = 196/534 (36%), Gaps = 44/534 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++  + R+IP + DG KP  R+++H      L 
Sbjct: 651  KPGTFLDHSGAKITYTDFINKELILFSMADNQ-RSIPSVVDGLKPGQRKVLHTCFRRNLK 709

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G    H HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 710  KD---MKVVELAGHVSGMTAYH-HGDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 765

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    DE  + + +  + +  EP VF    P +L NG  
Sbjct: 766  GGGDCASARYIYTRLSPFARKVFHSADEPLLTYNED-DGKKIEPEVFMPVVPMILINGAD 824

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N +E+      L+       E +  +  G    TG ++    +    
Sbjct: 825  GIGTGWSSSIPNYNPEEVVNNLKRLMAG--EPTEPMQPWFRG---FTGEVVAVGGD---- 875

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
                       R ++       G   + +TE+P +       +K+ E+I A+++P   +D
Sbjct: 876  -----------RFKFSGIIRECGEKEVEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 924

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
             RD +       +   +       L E +     +         V     GR+ +   +D
Sbjct: 925  YRDYNTHTKVHFIIQLDEKHMKVALTEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVD 984

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             ILKE+   R +   RR  F++  + R +E L         I +   +I  + +P  +  
Sbjct: 985  DILKEFFVVRLKYYERRKQFQLADLQRDLEKLSNQARFVQMIIDGKLVISKKKRPDLIAE 1044

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             +    +         ++     + E + + E D+   +K             W+     
Sbjct: 1045 LKDKGFKPISKVAEAPKMGEDEPVVEEEGEEESDDNDTQKLSSSFDYLLSMPMWSLTQER 1104

Query: 479  IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
            + +++                 EV    K + +          + +S       
Sbjct: 1105 VEKLRRQIGDKET---------EVDVLIKLSKEDIWTRDLDELIKLSKEDIWTR 1149


>gi|302500519|ref|XP_003012253.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
 gi|291175810|gb|EFE31613.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
          Length = 1680

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 81/407 (19%), Positives = 162/407 (39%), Gaps = 46/407 (11%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 773  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 831

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 832  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 887

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 888  GGSDSASARYIYTRLSPFARRLFHPADEPLLVNNVD-----DGKVIEPETYVPVVPLILI 942

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +E+ +    L+   E+   K   +       TG        
Sbjct: 943  NGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGEELVPMKPW-FRGFKGEVTGSGDRYKFS 1001

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP- 296
             I++                          + +TE+P +       +K+ E+I A+++P 
Sbjct: 1002 GIIK--------------------QTADNEVEITELPIRTWTQDFKDKLEEIIKAEKVPS 1041

Query: 297  ---LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
                 +D    +     I +  K+     +  +E  F L   +      +   + GR+ +
Sbjct: 1042 FIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITR 1100

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
                + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 1101 YETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1147


>gi|267150|sp|Q01320|TOP2A_MOUSE RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|220616|dbj|BAA02076.1| DNA topoisomerase II [Mus musculus]
          Length = 1528

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 72/424 (16%), Positives = 156/424 (36%), Gaps = 39/424 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 692  LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 747

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 748  GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 806

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+    D+  + F    + +  EP  +      +L NG  GI  G +  IP+
Sbjct: 807  TMLSPLARLLFPPKDDHTLRFLYD-DNQRVEPEWYNPINTMVLINGAEGIGTGWSCKIPN 865

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             +V+E+      L+D  E            P  P+      + E +          + + 
Sbjct: 866  FDVREVVNNIRRLLDGEEPL----------PMLPSYKNFKGTIEELAS------NQYVIN 909

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                + +       I ++E+P +       E++ E +     K   L+ D R+   +   
Sbjct: 910  GEVAILDS----TTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPSLITDYREYHTDTTV 965

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHR 368
              +         +     +  +  +++    N  VL      + +   +  IL+++   R
Sbjct: 966  KFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 1025

Query: 369  REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +    R  + +     +      +   I      +I+   + + +   V++ R   ++ 
Sbjct: 1026 LKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELIKVLIQRGYDSDP 1085

Query: 427  QVDA 430
                
Sbjct: 1086 VKAW 1089


>gi|134077492|emb|CAK96636.1| unnamed protein product [Aspergillus niger]
          Length = 1712

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 164/402 (40%), Gaps = 35/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V+ ++    + +  + ++++    R+IP + DG KP  R++++      L 
Sbjct: 782  KPGTFLDHSVEKITYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRNLK 840

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 841  KD---MKVVELAGHVSGMTAYQ-HGDISLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 896

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  I    DE  + +    + +  EP V+    P +L NG  
Sbjct: 897  GGSDCASARYIYTRLSPFARRIFHASDEPLLTYNVD-DGKTIEPEVYMPVVPMILINGAD 955

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N +++ +    L++  E  I+ +  +  G    TG +     +    
Sbjct: 956  GIGTGWSSSIPNYNPEDVVDNLKRLMNGEE--IKPMQPWFRG---FTGEVTSIGGD---- 1006

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
                       R ++       G   + +TE+P +       +K+ ++I A++ P   +D
Sbjct: 1007 -----------RFKFSGIIKETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKD 1055

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
             +D +       +   +       + E +     +         V     GR+ +   +D
Sbjct: 1056 YKDYNTHTKVHFVIQMDEKHLKSAVEEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVD 1115

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             ILKE+ A R +   RR  +++  + + +E L         I
Sbjct: 1116 DILKEFFAVRLKYYERRKQYQLNEMQKELEKLSNQARFVQMI 1157


>gi|295668785|ref|XP_002794941.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
 gi|226285634|gb|EEH41200.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
          Length = 1582

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 156/435 (35%), Gaps = 47/435 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++   + ++    + +  + ++++    R+IP + DG KP  R++++   +  + 
Sbjct: 669  KPGTFLDHTTEEITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFKRNVR 727

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 728  KD---IKVVELAGYVSGMTAYQ-HGDVSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 783

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  I    DE  + +    +    EP ++    P +L NG  
Sbjct: 784  GGSDSASARYIYTRLSPFARRIFHPADEPLLTYNVD-DGHTIEPEIYVPVVPLVLINGAD 842

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N ++I      L+D   +   +                        E
Sbjct: 843  GIGTGWSTSIPNYNPEDIVANLKCLMDGEPLVPMQP--------------WFRGFTG--E 886

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
               LG   ++   R        G   + +TE+P +       +++ E+I A+++P   +D
Sbjct: 887  VVSLGGERYKFSGRIS----QVGENEVEITELPIRCWTQDFKDRLEEIIKAEKVPSFIKD 942

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
             +D +       +   +       + E +     +      +  V               
Sbjct: 943  YKDYNTHTKVHFVIQLDEKHAAKAIAEGLEEKFKLSKTIATSNLVAFD---------PEG 993

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVE-----ILKGLLIAYLNIDEIIAIIRNEDKPKP 415
                     ++L    S R++  ++R         + +      I E    + N  K   
Sbjct: 994  RITKYDSPEDILREFYSVRIKFYEKRKMPLWSLTQERVEKLRRQIGEKEIEVDNLIKLSK 1053

Query: 416  VMVSRFSLTENQVDA 430
              + R  L +   + 
Sbjct: 1054 EDIWRKDLDDFIAEW 1068


>gi|317030635|ref|XP_001392968.2| DNA topoisomerase 2 [Aspergillus niger CBS 513.88]
          Length = 1707

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 164/402 (40%), Gaps = 35/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V+ ++    + +  + ++++    R+IP + DG KP  R++++      L 
Sbjct: 777  KPGTFLDHSVEKITYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRNLK 835

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 836  KD---MKVVELAGHVSGMTAYQ-HGDISLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 891

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  I    DE  + +    + +  EP V+    P +L NG  
Sbjct: 892  GGSDCASARYIYTRLSPFARRIFHASDEPLLTYNVD-DGKTIEPEVYMPVVPMILINGAD 950

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N +++ +    L++  E  I+ +  +  G    TG +     +    
Sbjct: 951  GIGTGWSSSIPNYNPEDVVDNLKRLMNGEE--IKPMQPWFRG---FTGEVTSIGGD---- 1001

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
                       R ++       G   + +TE+P +       +K+ ++I A++ P   +D
Sbjct: 1002 -----------RFKFSGIIKETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKD 1050

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
             +D +       +   +       + E +     +         V     GR+ +   +D
Sbjct: 1051 YKDYNTHTKVHFVIQMDEKHLKSAVEEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVD 1110

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             ILKE+ A R +   RR  +++  + + +E L         I
Sbjct: 1111 DILKEFFAVRLKYYERRKQYQLNEMQKELEKLSNQARFVQMI 1152


>gi|124108795|gb|ABM90974.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 59/93 (63%), Positives = 78/93 (83%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           L+ GQGNFG+IDGDSAAA RYTE R+ ++A  +
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGL 93


>gi|67538472|ref|XP_663010.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|40743376|gb|EAA62566.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|259485149|tpe|CBF81963.1| TPA: DNA topoisomerase 2 (EC 5.99.1.3)
            [Source:UniProtKB/TrEMBL;Acc:O59864] [Aspergillus
            nidulans FGSC A4]
          Length = 1709

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 87/504 (17%), Positives = 181/504 (35%), Gaps = 40/504 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N +T ++ +V  +S    +    + ++++    R+IP + DG KP  R++++ + +  + 
Sbjct: 761  NPDTFMDHSVAKISYTDFINNELIQFSMADNL-RSIPSMVDGMKPGQRKVMYTVMKRNIK 819

Query: 68   FGAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G+V  +   H HGD S++ +++ LAQ F        +   GNFG+   
Sbjct: 820  KD---VKVLDLTGQVFSLTAYH-HGDASMHQTIIGLAQDFVGSNNVNTLEPSGNFGSRLK 875

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  A++ RY   R++  A  I    D+  + + +  + ++ EP V+    P +L NG  
Sbjct: 876  GGADASSARYIHTRLSPFARKIFHPHDDPILKYLED-DGKEIEPWVYVPVVPMILINGAD 934

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N ++I +    +I   EI   +                 +  +   E
Sbjct: 935  GIGTGWSTSIPNYNPEDIVDNLKRMIRGEEIKPMQP--------------WFKGFKG--E 978

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
              +LG   ++                + VTE+P +      I K+ E+I A + P L   
Sbjct: 979  VTQLGPDKYKFSGLIKQVSDKE----LEVTELPIRTWTQDFINKLEEMIKADKAPSLIKD 1034

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
              +   +  + L  +    +    +   F+    +    +    L           +G +
Sbjct: 1035 YKDYNTNSDVHLVLQLDEKNVKEPLTQEFLEEKFKLSKTIATTNLVAFN------AEGQM 1088

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
             ++      +             R+   L  L I    +      ++       V+  + 
Sbjct: 1089 TKYPNVEAILEEFYRLRLKFYGKRKQHQLDQLQIELEKLTNQARFVQMIIDGDLVVSKKK 1148

Query: 422  SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
                  V  + +L  +   K  +     E + ++   E  D+      Q        +  
Sbjct: 1149 K--SVLVKELDSLGFKRFNKTADAAKAGETEKVIEASEDEDTEAQDDTQDLAHAFDYLLG 1206

Query: 482  VKEIFSKSTDLGRRRTTFCEVSRA 505
            +         + + R    E    
Sbjct: 1207 MAIWSLTQERVEKLRRQIGEKEHE 1230


>gi|18369814|dbj|BAB84102.1| DNA topoisomerase II [Aspergillus niger]
          Length = 1391

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 164/402 (40%), Gaps = 35/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V+ ++    + +  + ++++    R+IP + DG KP  R++++      L 
Sbjct: 704  KPGTFLDHSVEKITYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRNLK 762

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 763  KD---MKVVELAGHVSGMTAYQ-HGDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 818

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  I    DE  + +    + +  EP V+    P +L NG  
Sbjct: 819  GGSDCASARYIYTRLSPFARRIFHASDEPLLTYNVD-DGKTIEPEVYMPVVPMILINGAD 877

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N +++ +    L++  E  I+ +  +  G    TG +     +    
Sbjct: 878  GIGTGWSSSIPNYNPEDVVDNLKRLMNGEE--IKPMQPWFRG---FTGEVTSIGGD---- 928

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
                       R ++       G   + +TE+P +       +K+ ++I A++ P   +D
Sbjct: 929  -----------RFKFSGIIKETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKD 977

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
             +D +       +   +       + E +     +         V     GR+ +   +D
Sbjct: 978  YKDYNTHTKVHFVIQMDEKHLKSAVEEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVD 1037

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             ILKE+ A R +   RR  +++  + + +E L         I
Sbjct: 1038 DILKEFFAVRLKYYERRKQYQLNEMQKELEKLSNQARFVQMI 1079


>gi|221132667|ref|XP_002158728.1| PREDICTED: similar to topoisomerase (DNA) II alpha, partial [Hydra
            magnipapillata]
          Length = 1323

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 87/439 (19%), Positives = 161/439 (36%), Gaps = 45/439 (10%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E+  + V+ +  + +  + ++ +T  ER+IP L DGFKP  R+++    +        
Sbjct: 675  LYEKGTRTVTYQDFINKELILFS-NTDNERSIPSLVDGFKPGQRKVLFTCMKRN---DKR 730

Query: 72   FKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V  +   H HG+ S+  ++V LAQ F       ++   G FG     G  
Sbjct: 731  EVKVAQLAGSVAELSAYH-HGEMSLMGTIVNLAQNFVGSNNLNVLLPIGQFGTRHVGGKD 789

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANGTSG 182
            +A+ RY    M+ +  L+    D    D   TY   + +  EP  +    P  L NG  G
Sbjct: 790  SASPRYIFTMMSSLTRLVFPEKD----DAVLTYLFDDNQKIEPEWYCPIIPMCLVNGAEG 845

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T IP+ ++++I E    +I+  E            P FP+            E 
Sbjct: 846  IGTGYSTKIPNFDIRDIVENVKRMINGEEPQ----------PMFPSYKDFTG------EI 889

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE---KIAELIIAKRIPLLE 299
             + G   F  +    + +       I +TE+P +       E    +      K  P + 
Sbjct: 890  VQEGDQKFICQGTINIIDE----TTIEITELPVRTWTQAYKETVLDVYLYGNEKSPPCIT 945

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPL 357
            D ++   +     +             E +     + +   L+  VL      + +    
Sbjct: 946  DYKEYHTDSTVKFVITMTPEQMVKAEEEGLHKKFKLLSSINLSCMVLFDEFGCIKKYESP 1005

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG--LLIAYLNIDEIIAIIRNEDKPKP 415
              I+K +   R      R  F +  ++     L+     I      +II   R++     
Sbjct: 1006 TEIMKAFFNVRMAKYNERKKFILGMLEAECSKLENQARFILEKIEGKIIIENRSKRDVIT 1065

Query: 416  VMVSRFSLTENQVDAILNL 434
             +V R  +++        +
Sbjct: 1066 TLVERGYVSDPVKAWKAEV 1084


>gi|22830795|dbj|BAC15613.1| DNA topoisomerase II [Aspergillus ochraceus]
          Length = 1101

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 91/402 (22%), Positives = 162/402 (40%), Gaps = 35/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V  ++    + +  + ++++  + R+IP + DG KP  R+++H      L 
Sbjct: 645  KPGTYLDHSVAKITYTDFINKELILFSMADNQ-RSIPSVVDGLKPGQRKVLHTCFRRNLK 703

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G    H HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 704  KD---MKVVELAGHVSGMTAYH-HGDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 759

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  I    DE  + + +  + +  EP VF    P +L NG  
Sbjct: 760  GGGDCASARYIYTRLSPFARKIFNTADEPLLTYNED-DGKKIEPEVFMPVVPMILINGAD 818

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N +++      L+                   PT  +    R    E
Sbjct: 819  GIGTGWSSSIPNYNPEDVVNNLKRLM----------------AGQPTEPMQPWFRGFTGE 862

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
               +G   ++      + E   G   + +TE+P +       +K+ E+I A+++P   +D
Sbjct: 863  VVAVGGDRYKFSGI--IREC--GDKEVEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 918

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
             RD +       +   +       L E +     +         V     GR+ +   +D
Sbjct: 919  YRDYNTHTKVHFIIQLDEKHMKVALTEGLEEKFKLTKSIATTNLVAFDPEGRITKYATVD 978

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             ILKE+   R +   RR  F++  + R +E L         I
Sbjct: 979  DILKEFYVVRLKYYERRKQFQLNDLQRELEKLSNQARFVQMI 1020


>gi|70947313|ref|XP_743285.1| DNA topoisomerase II [Plasmodium chabaudi chabaudi]
 gi|56522707|emb|CAH74370.1| DNA topoisomerase II, putative [Plasmodium chabaudi chabaudi]
          Length = 937

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 148/397 (37%), Gaps = 34/397 (8%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L   
Sbjct: 199 GSYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLRNE 257

Query: 70  AAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
               K A++VG +      H HG+ S+  +++ +AQ F        +   G FG+    G
Sbjct: 258 ---CKVAQLVGYIAEHSAYH-HGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGG 313

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             A+A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI
Sbjct: 314 KDASAARYIFTKLASSTRSIFNEFDDPILKY-LNEEGQKIEPQYYIPVIPTILVNGCEGI 372

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G ++ IP++N ++I       I                   P   ++   ++      
Sbjct: 373 GTGYSSFIPNYNYKDIINNIKKYI----------------DKEPLVPMVPWYKDFKGRIE 416

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             G+ G+                 + +TE+P +       E + EL+  ++  L+ D  D
Sbjct: 417 SNGKSGYETIGIIN----KIDDETLEITELPIKRWTQDYKEFLEELLTDEKNQLILDYID 472

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP--QVMPLDGIL 361
            S+ +        +         E +  +  +++        L    +   +      IL
Sbjct: 473 NSSHEDVCFTIKMDPVKLKKAEEEGLEKVFKLKSTLTTTNMTLFDSNLKLQRYASELDIL 532

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           K++  HR      R S+ +  +++   I+       L
Sbjct: 533 KDFCFHRLNAYNERKSYLISKLEKEKRIISNKTKFIL 569


>gi|18369810|dbj|BAB84100.1| DNA topoisomerase II [Aspergillus flavus]
          Length = 1219

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 161/398 (40%), Gaps = 35/398 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V  +S    + +  + ++++    R+IP + DG KP  R++++      L 
Sbjct: 667  KPGTFLDHSVSKISYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRNLK 725

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 726  KD---MKVVELAGHVSGMTAYQ-HGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQ 781

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    D+  + + +  + E  EP ++    P +L NG  
Sbjct: 782  GGSDCASARYIYTRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGAD 840

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I +    L+D  E    +   +  G    TG +     +    
Sbjct: 841  GIGTGWSSSIPNYNPEDIVDNLKRLMDGEETRPMQP--WFRG---FTGEVTDVGGD---- 891

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
                       R ++       G   + +TE+P +       +K+ ++I A++ P   +D
Sbjct: 892  -----------RFKFSGIIKETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKD 940

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
             +D +       +   +       L E +     +         V     GR+ +   +D
Sbjct: 941  YKDYNTHTKVHFVIQLDEKNMKSALSEGLEEKFKLSKTVATTNLVAFDPEGRITKYATVD 1000

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
             ILKE+  +R +   +R  +++  + + ++ L      
Sbjct: 1001 DILKEFYTYRLKFYEKRKQYQLSQLQKELDKLSNQARF 1038


>gi|339810|gb|AAA61210.1| topoisomerase II [Homo sapiens]
          Length = 886

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 130/337 (38%), Gaps = 29/337 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 566 LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 621

Query: 80  GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
           G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 622 GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 680

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
             ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P+
Sbjct: 681 TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 739

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           ++ +EI      ++D  +            P  P       + + +      G+  + V 
Sbjct: 740 YDAREIVNNVRRMLDGLDPH----------PMLPNYKNFKGTIQEL------GQNQYAVS 783

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
               V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 784 GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFV 842

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
                          +  +  ++T    N  VL    
Sbjct: 843 VKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHM 879


>gi|25006381|dbj|BAC24010.1| DNA topoisomerase II [Trichophyton rubrum]
          Length = 1097

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 81/406 (19%), Positives = 161/406 (39%), Gaps = 44/406 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 645  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 703

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 704  RD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 759

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 760  GGSDSASARYIYTRLSPFARRLFHQADEPLLVNNVD-----DGKVIEPETYVPVVPLILI 814

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +E+ +    L+   E+   K   +       TG        
Sbjct: 815  NGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPW-FRGFKGEVTGSGDRYKFS 873

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             I++                      G   + +TE+P +       +K+ E+I A+++P 
Sbjct: 874  GIIK--------------------QTGDNEVEITELPIRTWTQDFKDKLEEIIKAEKVPS 913

Query: 298  L-EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQV 354
              +D +D +       +           L E +     +  +   +  V     GR+ + 
Sbjct: 914  FIKDYKDYNTHTNVHFVIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRY 973

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
               + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 974  ETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1019


>gi|326482946|gb|EGE06956.1| DNA topoisomerase II [Trichophyton equinum CBS 127.97]
          Length = 1678

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 161/404 (39%), Gaps = 40/404 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 773  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 831

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 832  KD---VKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 887

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT-YNEEDSEPVVFPSKFPNLLANGT 180
             G  +A+ RY   R++  A  +    DE  +   +   + +  EP  +    P +L NG 
Sbjct: 888  GGSDSASARYIYTRLSPFARRLFHQADEPLL--VNNIDDGKVIEPETYVPVVPLILINGA 945

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +TSIP++N +E+ +    L+   E+   K   +       TG         I+
Sbjct: 946  DGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPW-FRGFKGEVTGSGDRYKFSGII 1004

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---- 296
            +                          + +TE+P +       +K+ E+I A+++P    
Sbjct: 1005 K--------------------QTADNEVEITELPIRTWTQDFKDKLEEIIKAEKVPSFIK 1044

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
              +D    +     I +  K+     +  +E  F L   +      +   + GR+ +   
Sbjct: 1045 DYKDYNTHTDVHFIIQMEEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITRYET 1103

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 1104 PEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1147


>gi|25006385|dbj|BAC24012.1| DNA topoisomerase II [Trichophyton violaceum]
          Length = 1094

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 81/406 (19%), Positives = 161/406 (39%), Gaps = 44/406 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 644  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 702

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 703  RD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 758

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 759  GGSDSASARYIYTRLSPFARRLFHQADEPLLVNNVD-----DGKVIEPETYVPVVPLILI 813

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +E+ +    L+   E+   K   +       TG        
Sbjct: 814  NGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPW-FRGFKGEVTGSGDRYKFS 872

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             I++                      G   + +TE+P +       +K+ E+I A+++P 
Sbjct: 873  GIIK--------------------QTGDNEVEITELPIRTWTQDFKDKLEEIIKAEKVPS 912

Query: 298  L-EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQV 354
              +D +D +       +           L E +     +  +   +  V     GR+ + 
Sbjct: 913  FIKDYKDYNTHTNVHFVIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRY 972

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
               + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 973  ETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1018


>gi|168011945|ref|XP_001758663.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690273|gb|EDQ76641.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1238

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 67/402 (16%), Positives = 147/402 (36%), Gaps = 33/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++     +     + +  + ++++    R+IP + DG KP  R+I+    +    
Sbjct: 665  EPGTFLDMTADKIKYSDFVNKELILFSMAD-LARSIPSMVDGLKPGQRKILFCCFKRNFV 723

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
              A   K A+  G V      H HG+ S+  +++ +AQ F       L+S +G FG    
Sbjct: 724  TQA---KVAQFSGYVSEHSAYH-HGEASLASTIIGMAQNFVGSNNINLLSPEGQFGTREQ 779

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G + A+ RY    +  +   +    D+  +D+    + +  EP  +    P +L NG+ 
Sbjct: 780  GGKNHASPRYIFTCLAPITRALFPQPDDVLLDYMK-EDGQSIEPSWYCPIIPLVLVNGSE 838

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++ +P++N +EI      L+   E++                            
Sbjct: 839  GIGTGWSSFVPNYNPREIVANIRRLLAGQELTPMHPWYKSFMGTIECSATKDIG------ 892

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLL 298
                    + +       +       I + E+P +       E +  L+      + P +
Sbjct: 893  ------LTYTITGTIEQIDE----TTIKILELPVRKWTQDYKEFLDALMTPSDKNKEPFI 942

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMP 356
            +D R+ + +         +       L E +     + T    +   L   +  + +   
Sbjct: 943  KDFREHNTDTKVHFELTLSEENMAIALAEGLVKKFKLTTTISTSNMHLFDAKGIIKKYDT 1002

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             + IL+E+   R ++  +R + ++Q +   +  +   +   L
Sbjct: 1003 PEQILEEFFHIRLDLYVKRKAVQLQNLQYELVKVDNKVRFIL 1044


>gi|154297045|ref|XP_001548951.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
 gi|150843138|gb|EDN18331.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
          Length = 1823

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 158/405 (39%), Gaps = 27/405 (6%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++   K ++    + +  + ++++    R+IP + DG KP  R++++A  +  L  
Sbjct: 795  PGTYLDHTDKMLTYDNFINKELILFSMADNM-RSIPSVIDGLKPGQRKVMYACFKRNLIN 853

Query: 69   GAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K   + G V  I   H HG+ S+  ++V LAQ F        +   GNFG+    
Sbjct: 854  D---MKVVELAGYVSQISAYH-HGEASMQMTIVGLAQNFVGSNNVNCLEPSGNFGSRLQG 909

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  +A+ RY   R++  A  +   +D+  +++    + +  EPV +    P +L NG  G
Sbjct: 910  GSDSASARYIFTRLSPFARRVYSALDDPVLEYNID-DGKSIEPVTYFPVVPMVLINGAEG 968

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T+IP+++  E+       +   + S E+     + P F       E        
Sbjct: 969  IGTGWSTNIPNYHPVEVVNNLKRRMGRLDDSGEEKPFETMMPWFRGWKGTPEP------- 1021

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-EDI 301
               G   ++            G   + +TE+P ++       K+ E+I A+++P   +D 
Sbjct: 1022 --AGPDRYKFNGIIR----ETGDTEVEITELPIRMWTDDFKAKLEEVIKAEKVPSFIKDY 1075

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            ++ +      ++   +     + L E +     +      +  V    R  Q+   D + 
Sbjct: 1076 KEFNDHKNVHMIIQMDDKHMKEALKEGLAEKFKLNKTVATSNLVAFDHRG-QIRKYDKVE 1134

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
                    + L   +  +   + +     + L      + EII  
Sbjct: 1135 DILEEFYEQRLKMYTVRKAHWMKKLNVEYRKLTNQARFVTEIIEN 1179


>gi|312076268|ref|XP_003140785.1| hypothetical protein LOAG_05201 [Loa loa]
 gi|307764049|gb|EFO23283.1| hypothetical protein LOAG_05201 [Loa loa]
          Length = 729

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 94/541 (17%), Positives = 186/541 (34%), Gaps = 47/541 (8%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D ++      ++    VS +  + +  + ++     ER+IP L DG KP  R+++    
Sbjct: 176 EDGLTEEYLYDKDT-HVVSFKDFVNKELVLFSNCD-NERSIPSLVDGLKPGQRKVLFTCF 233

Query: 63  EMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNF 118
           +          K A++ G V  +   H HG+ S+  ++V LAQ F       L+   G F
Sbjct: 234 K---RADKKEVKVAQLAGAVGEMSAYH-HGEASLMSTIVNLAQDFVGSNNINLLLPIGQF 289

Query: 119 GNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE-PVVFPSKFPNL 175
           G     G  +A+ RY   ++  V + +   +DE+ + F   Y E     P  +    P +
Sbjct: 290 GTRLQGGKDSASPRYIFTQLNPVTKALFPSIDENVLRFL--YEENQKIEPEWYCPVIPTV 347

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           L NGT GI    +T +P +N +EI +   ALID  E                        
Sbjct: 348 LVNGTEGIGTAWSTKVPCYNPREIVDNMRALIDGKEPKT-------------------FG 388

Query: 236 RESIVESYRLGRGGFR----VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI- 290
           +++ +  Y+  RG        R     E     +  I +TE+P +       E +   + 
Sbjct: 389 KKNSIPWYKHFRGTIEQLDDQRFICNGEVAIINNETIEITELPIRTWTQTYKEAVLVPMM 448

Query: 291 --IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
               K+  ++ D ++   +     +   +         E +  +  +++       VL  
Sbjct: 449 DGNDKQPAVITDFKEYHTDTTVKFVVKMSSDKLRASKEEGLHKVFKLQSVINTTSMVLFD 508

Query: 349 --GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEII 404
             G + +   +  I KE+   R++    R SF+   +  + E    +   I      EI+
Sbjct: 509 PFGYLRRFENVTDICKEFFEIRKKKYIERKSFQEGLLRAQSERLSNQARFILAKIKGEIL 568

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
              + +      ++      +         + + L  L E     + +     +E     
Sbjct: 569 IENKRKATIVEQLIKMSFKPDPVKKWKEERKKQELMMLGEVAQDEDEEEQEENEEDTHQS 628

Query: 465 LNSGKQ--QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
                +   ++ +            K   L    T   E+   ++ T            +
Sbjct: 629 KELAAKLSDYDYLVGMAILKLSEEEKDKLLKESETKLSELKLLEEMTWADLWNNDLNCFL 688

Query: 523 V 523
            
Sbjct: 689 T 689


>gi|156101890|ref|XP_001616638.1| DNA topoisomerase II [Plasmodium vivax SaI-1]
 gi|148805512|gb|EDL46911.1| DNA topoisomerase II, putative [Plasmodium vivax]
          Length = 1502

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 153/397 (38%), Gaps = 34/397 (8%)

Query: 10   NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L   
Sbjct: 718  GSYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLKNE 776

Query: 70   AAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                K A++VG +      H HG+ S+  +++ +AQ F        +   G FG+    G
Sbjct: 777  ---CKVAQLVGYIAEHSAYH-HGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGG 832

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A+A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI
Sbjct: 833  KDASAARYIFTKLASSTRSIFNEYDDPILKY-LNEEGQKIEPQYYIPVIPTILVNGCEGI 891

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++ IP++N ++I E     I+                  P   +I   ++      
Sbjct: 892  GTGYSSFIPNYNYKDIIENIKRYINKE----------------PLLPMIPWYKDFKGRIE 935

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              G+ G+                 + + E+P +       E + EL+  ++  L+ D  D
Sbjct: 936  SNGKTGYETIGIIH----KIDDETLEINELPIKKWTQDYKEFLEELLTDEKHQLIVDYID 991

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGIL 361
             S+ +        + +       E +  +  +++        L     ++ +      IL
Sbjct: 992  NSSHEDICFTIKMDPAKMKKAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDIL 1051

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
            K++  HR +    R S+ +  +++  +I+       L
Sbjct: 1052 KDFCFHRLKAYENRKSYLISKLEKEKKIISNKSKFIL 1088


>gi|730968|sp|P41001|TOP2_PLAFK RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1398

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 70/390 (17%), Positives = 146/390 (37%), Gaps = 33/390 (8%)

Query: 10   NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L   
Sbjct: 707  GSYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLRNE 765

Query: 70   AAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                K A++VG +      H HG+ S+  +++ +AQ F        +   G FG+    G
Sbjct: 766  ---CKVAQLVGYIAEHSAYHHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGG 822

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A+A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI
Sbjct: 823  KDASAARYIFTKLASSTRSIFNEYDDPILKY-LNEEGQKIEPQYYIPVIPTILVNGCEGI 881

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++ IP++N ++I +     I+               P  P      + +  I  + 
Sbjct: 882  GTGYSSFIPNYNYKDIIDNIKRYINKE-------------PLIPMVPWYKDFKGRIESNG 928

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
            + G     +            +  + +TE+P +       E + EL+  ++  L+ D  D
Sbjct: 929  KTGYETIGII-------NKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYID 981

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
             S+ +        + +       E +  +  +++        L    + ++      L  
Sbjct: 982  NSSHEDICFTIKMDPAKLQKAEEEGLEKVFKLKSTLTTTNMTLFDPNL-KLQRYSTELDI 1040

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
                  + L      R   +  ++E  K +
Sbjct: 1041 LKEFCYQRLK-AYENRKSYLISKLEKEKRI 1069


>gi|18369812|dbj|BAB84101.1| DNA topoisomerase II [Aspergillus fumigatus]
          Length = 1495

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 88/539 (16%), Positives = 190/539 (35%), Gaps = 75/539 (13%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V  ++    + +  + ++++  + R+IP + DG KP  R++++      L 
Sbjct: 699  KPGTFLDHSVDKITYTDFINKELILFSMADNQ-RSIPSVVDGLKPGQRKVLYTCFRRNLR 757

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 758  KD---MKVVELAGHVSGMTAYQ-HGDASLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 813

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    D+  + + +  + +  EP V+    P +L NG  
Sbjct: 814  GGQDCASARYIYTRLSPFARRVFHAADDPLLTYNED-DGKKIEPEVYVPVVPMILINGAD 872

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I +    L+D     ++ +  +  G    TG +     +    
Sbjct: 873  GIGTGWSSSIPNYNPEDIVDNLKRLMDG--QPVKPMQPWFRG---FTGEVTALGGD---- 923

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP----L 297
                       R ++       G   + +TE+P +       +K+ E+I A++ P     
Sbjct: 924  -----------RFKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEEIIKAEKTPSFIKD 972

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM---------------------- 335
             +D    +     I +  KN     +  +E  F LS                        
Sbjct: 973  YKDYNTHTKVHFVIQMDEKNLQSAREEGLEEKFKLSKTIATTNLVAFDPEGRITKYASVD 1032

Query: 336  ---ETRFPLNMNVLSMGRVPQVM--------PLDGILKEWLAHRREVLFRRSSFRMQAID 384
               +  + + +      +  Q+           +      +    +++  +        +
Sbjct: 1033 DILKEFYAVRLKFYERRKQYQLNELQKELDKLTNQARFVQMIIDGDLVISKKKKPALVAE 1092

Query: 385  RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +    K        +         E++          +  +  D +L + L SL     
Sbjct: 1093 LKKHGFKAFPKVIDAVKAGEDAPVVEEEEDESGNDETEVLSSAYDYLLGMPLWSLTHERV 1152

Query: 445  YQIKSELDNLLAEKEKIDSL------LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
             +++ ++     E + +  L              N+   ++ +      K  ++GRR +
Sbjct: 1153 EKLRRQIGEKEVEIDALIKLSKEDIWKRDLDDFINEWRFQLEDEARRQRKVANMGRRTS 1211


>gi|70992793|ref|XP_751245.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|66848878|gb|EAL89207.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|159130301|gb|EDP55414.1| DNA topoisomerase II [Aspergillus fumigatus A1163]
          Length = 1660

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 88/539 (16%), Positives = 190/539 (35%), Gaps = 75/539 (13%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V  ++    + +  + ++++  + R+IP + DG KP  R++++      L 
Sbjct: 699  KPGTFLDHSVDKITYTDFINKELILFSMADNQ-RSIPSVVDGLKPGQRKVLYTCFRRNLR 757

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 758  KD---MKVVELAGHVSGMTAYQ-HGDASLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 813

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    D+  + + +  + +  EP V+    P +L NG  
Sbjct: 814  GGQDCASARYIYTRLSPFARRVFHAADDPLLTYNED-DGKKIEPEVYVPVVPMILINGAD 872

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I +    L+D     ++ +  +  G    TG +     +    
Sbjct: 873  GIGTGWSSSIPNYNPEDIVDNLKRLMDG--QPVKPMQPWFRG---FTGEVTALGGD---- 923

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP----L 297
                       R ++       G   + +TE+P +       +K+ E+I A++ P     
Sbjct: 924  -----------RFKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEEIIKAEKTPSFIKD 972

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM---------------------- 335
             +D    +     I +  KN     +  +E  F LS                        
Sbjct: 973  YKDYNTHTKVHFVIQMDEKNLQSAREEGLEEKFKLSKTIATTNLVAFDPEGRITKYASVD 1032

Query: 336  ---ETRFPLNMNVLSMGRVPQVM--------PLDGILKEWLAHRREVLFRRSSFRMQAID 384
               +  + + +      +  Q+           +      +    +++  +        +
Sbjct: 1033 DILKEFYAVRLKFYERRKQYQLNELQKELDKLTNQARFVQMIIDGDLVISKKKKPALVAE 1092

Query: 385  RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +    K        +         E++          +  +  D +L + L SL     
Sbjct: 1093 LKKHGFKAFPKVIDAVKAGEDAPVVEEEEDESGNDETEVLSSAYDYLLGMPLWSLTHERV 1152

Query: 445  YQIKSELDNLLAEKEKIDSL------LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
             +++ ++     E + +  L              N+   ++ +      K  ++GRR +
Sbjct: 1153 EKLRRQIGEKEVEIDALIKLSKEDIWKRDLDDFINEWRFQLEDEARRQRKVANMGRRTS 1211


>gi|83775666|dbj|BAE65786.1| unnamed protein product [Aspergillus oryzae]
          Length = 1437

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 161/398 (40%), Gaps = 35/398 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V  +S    + +  + ++++    R+IP + DG KP  R++++      L 
Sbjct: 661  KPGTFLDHSVSKISYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRNLK 719

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 720  KD---MKVVELAGHVSGMTAYQ-HGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQ 775

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    D+  + + +  + E  EP ++    P +L NG  
Sbjct: 776  GGSDCASARYIYTRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGAD 834

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I +    L+D  E    +   +  G    TG +     +    
Sbjct: 835  GIGTGWSSSIPNYNPEDIVDNLKRLMDGEETRPMQP--WFRG---FTGEVTDVGGD---- 885

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
                       R ++       G   + +TE+P +       +K+ ++I A++ P   +D
Sbjct: 886  -----------RFKFSGIIKETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKD 934

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
             +D +       +   +       L E +     +         V     GR+ +   +D
Sbjct: 935  YKDYNTHTKVHFVIQLDEKNMKSALSEGLEEKFKLSKTVATTNLVAFDPEGRITKYATVD 994

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
             ILKE+  +R +   +R  +++  + + ++ L      
Sbjct: 995  DILKEFYTYRLKFYEKRKQYQLSQLQKELDKLSNQARF 1032


>gi|330793204|ref|XP_003284675.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
 gi|325085373|gb|EGC38781.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
          Length = 1260

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 94/500 (18%), Positives = 202/500 (40%), Gaps = 47/500 (9%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            S+ +  ++  +K ++    + +  + ++ +    R+IP L DG KP  R+I+ A  +  L
Sbjct: 766  SDMSQGIDHTIKEMTFPDFINKELIHFSWAANI-RSIPSLIDGLKPGQRKILFASFKRRL 824

Query: 67   DFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                   K +++ G V  +   H HG+QS+  +++++A  F      PL++  G FG   
Sbjct: 825  TSE---IKVSQLSGYVAEQTSYH-HGEQSLNSTIIKMAHNFVGSNNIPLLTPSGQFGTRL 880

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED---SEPVVFPSKFPNLLA 177
              GD +A+ RY   ++  ++  +   +D    D    Y EE+    +P  +    P +L 
Sbjct: 881  QGGDDSASARYIFTKLEPISRHLFNEMD----DALLNYLEEEGESIQPDYYVPIIPMVLV 936

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG+ GI VGMAT+IP  +  ++ E  +    +    ++K++ +  G            + 
Sbjct: 937  NGSEGIGVGMATTIPLFSPIDLIEQII-CRLDNVPPLKKIIPWYRGF-----------KG 984

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            +I  + +  +    +               +V++E+P     S   + + +LI    I  
Sbjct: 985  TIQPNLKSYKTNGVI---------KFDGKGLVISELPIGKWTSDYKDVLNDLIEKDVIRG 1035

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMP 356
             ++   E++    I+L  +      DL    +  L  + +   LN+ V     ++ +   
Sbjct: 1036 FQEANTENSVHFNILLSNQQMEEMEDLSENEMITLFKLSSNLHLNLTVFDEKNKIVKYES 1095

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED----- 411
             + I+  +   R E   +R S  M ++ ++++ L   +     I      I+        
Sbjct: 1096 PEEIIDHFFNIRLEFYNKRRSHLMASLTQQIKRLSSTIKFLETIASGKLKIQGRTKQQLI 1155

Query: 412  KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG--K 469
                      S T  +   + +L +  + K     ++S+L+    E  +I    +S   K
Sbjct: 1156 DDLESQHDFGSHTPEEYQHLFSLSILDITKERIDNLQSQLNKRQVEFNQIKDSDSSSLWK 1215

Query: 470  QQWNQIACEIREVKEIFSKS 489
                Q+   + + ++   K 
Sbjct: 1216 ADLKQLKEYLEKSQDFQKKP 1235


>gi|124108773|gb|ABM90963.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108775|gb|ABM90964.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108777|gb|ABM90965.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108779|gb|ABM90966.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108781|gb|ABM90967.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108783|gb|ABM90968.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 59/93 (63%), Positives = 78/93 (83%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           L+ GQGNFG+IDGDSAAA RYTE R+ ++A  +
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGL 93


>gi|327283546|ref|XP_003226502.1| PREDICTED: DNA topoisomerase 2-beta-like [Anolis carolinensis]
          Length = 1640

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 86/528 (16%), Positives = 183/528 (34%), Gaps = 35/528 (6%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          K A++ 
Sbjct: 726  LTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCCKRN---DKREVKVAQLA 781

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 782  GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNVSLLQPIGQFGTRLHGGKDAASPRYIF 840

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  IP+
Sbjct: 841  TMLSPLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKIPN 899

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            ++ +EI      ++D  +            P  P                 LG+  + V 
Sbjct: 900  YDTREIVNNVRRMLDGLDPL----------PMLPNYKNFKG------AIQELGQNQYVVS 943

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                V +        +      QV K +++E +      K   L+ D ++   +     +
Sbjct: 944  GEIYVVDRNTVEITELPVRTWTQVYKEQVLEPMLN-GTEKTPALISDYKEYHTDTTVKFV 1002

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREV 371
                           +  +  ++T    N  VL      + +   +  ILKE+   R   
Sbjct: 1003 VKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLNY 1062

Query: 372  LFRRSSFR--MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               R  +   +   +      +   I      +I    +++     ++V R   ++    
Sbjct: 1063 YNLRKEWLAGILGAESTKLNNQARFILEKIQGKIAIENKSKRDLIQLLVQRGYESDPVKA 1122

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ--QWNQIACEIREVKEIFS 487
                    +  +  +        +  +      + + +        +   +I + ++   
Sbjct: 1123 WKEAQEKAAEEEEMQNLNDDSSSSSGSTSGPDFNYILNMSLWCLTKEKVEDIIKQRDSKG 1182

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
            K  +  +R++          A +++    +      +      + +K 
Sbjct: 1183 KDLNDLKRKSPSDLWKEDLAAFVEELDKVEAQEREDVLAGMVGKPIKG 1230


>gi|255946696|ref|XP_002564115.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
            chrysogenum Wisconsin 54-1255]
 gi|211591132|emb|CAP97358.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
            chrysogenum Wisconsin 54-1255]
          Length = 1725

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 97/496 (19%), Positives = 189/496 (38%), Gaps = 35/496 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V  ++    + +  + ++++  + R+IP + DG KP  R+++H      L 
Sbjct: 775  KPGTFLDHSVAKITYTDFINKELILFSMADNQ-RSIPSVVDGLKPGQRKVLHTCFRRNLK 833

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G    H HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 834  KD---MKVVELAGHVSGMTAYH-HGDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 889

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    DE  + + +  + +  EP VF    P +L NG  
Sbjct: 890  GGGDCASARYIYTRLSPFARKVFHSADEPLLTYNED-DGKKIEPEVFMPVVPMILINGAD 948

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N +++      L+       E +  +  G    TG ++    +    
Sbjct: 949  GIGTGWSSSIPNYNPEDVVNNLKRLMAG--EPTEPMQPWFRG---FTGEVVAVGGD---- 999

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
                       R ++       G   + +TE+P +       +K+ E+I A+++P   +D
Sbjct: 1000 -----------RFKFSGIIRECGEKEVEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 1048

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
             RD +       +   +       L E +     +         V     GR+ +   +D
Sbjct: 1049 YRDYNTHTKVHFIIQLDEKHMKVALTEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVD 1108

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             ILKE+   R +   RR  F++  + R +E L         I +   +I  + KP  +  
Sbjct: 1109 DILKEFFVVRLKYYERRKQFQLADLQRDLEKLSNQARFVQMIIDGKLVISKKKKPVLIAE 1168

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             +    +         ++     + E + + E D+   +K             W+     
Sbjct: 1169 LKDKGFKPISKVAEAPKMGEDEPVVEEEGEEESDDNDTQKLSSSFDYLLSMPMWSLTQER 1228

Query: 479  IREVKEIFSKSTDLGR 494
            + +++           
Sbjct: 1229 VEKLRRQIGDKETEVD 1244


>gi|189193341|ref|XP_001933009.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187978573|gb|EDU45199.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1722

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 90/528 (17%), Positives = 187/528 (35%), Gaps = 71/528 (13%)

Query: 19   AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             +S    + +  + ++++    R+IP + DG KP  R++++      +       K   +
Sbjct: 799  DISYDDFVNKELILFSMADNV-RSIPSVIDGLKPGQRKVLYTCFRRNIKKD---VKVVEL 854

Query: 79   VGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYT 132
             G V G      HG+ S+  ++V LAQ F        +   GNFG+    G  AA+ RY 
Sbjct: 855  AGSVSGSTDY-AHGEASMQGTIVNLAQNFVGTNNINYLEPSGNFGSRLKGGADAASARYI 913

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
              R++  A  I  G D+  + + ++ +    EP +F    P +L NG+SGI  G ++ IP
Sbjct: 914  YTRLSPFARRIFHGHDDALLKYGES-DGHKIEPEMFVPILPTILINGSSGIGTGWSSEIP 972

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            + N  +I  A +     P  + + +   I      TG       +         +    V
Sbjct: 973  NFNPMDII-ANIRRRMEPGATKDDMTPMIPWYKGFTGTTTEIGPD-------RYQFTGTV 1024

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
            R          G   + +TE+P +       EK+ E+I A++ P       +     R+ 
Sbjct: 1025 R--------QTGDNEVEITELPVRYWTQDFKEKLEEIIKAEKAPSYIKDYIDYNTPDRVH 1076

Query: 313  LFPKNRSLDPDLLMES----IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
               K         +       F L   ++   L +   + GR+ +   +  I++E+   R
Sbjct: 1077 FIIKMEDKYMAEAVTKGLEEYFKLFKPQSTSNL-VAFDAHGRIHKYATVLDIIEEFYHIR 1135

Query: 369  REVLFRRSSFRMQAIDRRVEILKGLLIAYLN----------------------------- 399
                 +R   ++Q +++    +                                      
Sbjct: 1136 LRYYEKRKQHQLQVMEKEHLKMTNQAKFIQMIIDGKLTVSKKKKAVLVQELKKLGFTPFP 1195

Query: 400  ---IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                 +    + +  + +    +   ++ N  D +L + + SL +    ++  ++     
Sbjct: 1196 KVEEAKQAGEVEDYQEDEASEDADVEVSANDYDYLLGMAIWSLTQERVEKLMKQIGEKQH 1255

Query: 457  EKEKIDSL------LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            E + +  L              ++   ++ E  +   K   + RR + 
Sbjct: 1256 EIDTLIKLSPKDIWNVDLDAFMDEWNLQLEEEAKRKKKIAGITRRASQ 1303


>gi|302659966|ref|XP_003021668.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
 gi|291185576|gb|EFE41050.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
          Length = 1680

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 80/407 (19%), Positives = 162/407 (39%), Gaps = 46/407 (11%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 773  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 831

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 832  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 887

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 888  GGSDSASARYIYTRLSPFARRLFHQADEPLLVNNVD-----DGKVIEPETYVPVVPLILI 942

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +E+ +    L+   E+   K   +       +G        
Sbjct: 943  NGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGEELVPMKPW-FRGFKGEVSGSGDRYKFS 1001

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP- 296
             I++                          + +TE+P +       +K+ E+I A+++P 
Sbjct: 1002 GIIK--------------------QTADNEVEITELPIRTWTQDFKDKLEEIIKAEKVPS 1041

Query: 297  ---LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
                 +D    +     I +  K+     +  +E  F L   +      +   + GR+ +
Sbjct: 1042 FIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITR 1100

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
                + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 1101 YETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1147


>gi|68069037|ref|XP_676429.1| DNA topoisomerase II [Plasmodium berghei strain ANKA]
 gi|56496123|emb|CAH96271.1| DNA topoisomerase II, putative [Plasmodium berghei]
          Length = 1092

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 151/397 (38%), Gaps = 34/397 (8%)

Query: 10   NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L   
Sbjct: 712  GSYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLRNE 770

Query: 70   AAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                K A++VG +      H HG+ S+  +++ +AQ F        +   G FG+    G
Sbjct: 771  ---CKVAQLVGYIAEHSAYH-HGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGG 826

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A+A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI
Sbjct: 827  KDASAARYIFTKLASSTRSIFNEYDDPILKY-LNEEGQKIEPQYYIPVIPTILVNGCEGI 885

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++ IP++N ++I       ID               P  P      + +  I  + 
Sbjct: 886  GTGYSSFIPNYNYKDIINNIKKYIDKE-------------PLVPMVPWYKDFKGRIEPNG 932

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
            + G     +               + +TE+P +       E + EL+  ++  L+ D  D
Sbjct: 933  KSGYETIGII-------NKIDDETLEITELPIKRWTQDYKEFLEELLTDEKNQLIIDYID 985

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGIL 361
             S+ +        + +       E +  +  +++        L     ++ +      IL
Sbjct: 986  NSSHEDVCFTIKMDPTKLKRAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYASELDIL 1045

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
            K++  HR      R ++ +  +++   I+       L
Sbjct: 1046 KDFCFHRLNAYTDRKNYLISKLEKEKRIISNKAKFIL 1082


>gi|164663033|ref|XP_001732638.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
 gi|159106541|gb|EDP45424.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
          Length = 1376

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 114/282 (40%), Gaps = 32/282 (11%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  ++ + +   + +  + ++++    R+IP + DG KP  R++I +  +  L  
Sbjct: 640 PGTYLDHRIRNIPISDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVIFSCFKRKLKT 698

Query: 69  GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                K  ++ G V      H HGDQ++  ++V LAQ F       L+   G FG+    
Sbjct: 699 E---IKVHQLQGYVSEHSAYH-HGDQALTMTIVGLAQDFCGSNNVNLLMPNGQFGSRSMG 754

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           G  AA+ RY    + ++  L+    DE  +++ +  + +  EP  +    P +L NG  G
Sbjct: 755 GKDAASARYIFTAVPRITRLMFHADDEPLLNYLED-DGQSIEPEWYAPVVPQVLLNGAEG 813

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           I  G +T +P++N +E+ +     +   E               P           I  +
Sbjct: 814 IGTGWSTFVPNYNPREVVDNLRRRMAGEEYV-------------PMNPWYRGFVGGIEPA 860

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
              G   FRV       +         +TE+P +V      E
Sbjct: 861 ---GPERFRVTGIARQLDERT----WEITELPVRVWTMTYKE 895


>gi|83317979|ref|XP_731396.1| DNA topoisomerase II [Plasmodium yoelii yoelii str. 17XNL]
 gi|23491424|gb|EAA22961.1| DNA topoisomerase II, putative [Plasmodium yoelii yoelii]
          Length = 1489

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 150/397 (37%), Gaps = 34/397 (8%)

Query: 10   NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L   
Sbjct: 713  GSYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLKNE 771

Query: 70   AAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                K A++VG +      H HG+ S+  +++ +AQ F        +   G FG+    G
Sbjct: 772  ---CKVAQLVGYIAEHSAYH-HGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGG 827

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A+A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI
Sbjct: 828  KDASAARYIFTKLASSTRSIFNEYDDPILKY-LNEEGQKIEPQYYIPVIPTILVNGCEGI 886

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++ IP++N ++I       ID               P  P      + +  I  + 
Sbjct: 887  GTGYSSFIPNYNYKDIINNIKKYIDKE-------------PLVPMVPWYKDFKGRIEPNG 933

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
            + G     +               + +TE+P +       E + EL+  ++  L+ D  D
Sbjct: 934  KSGYETIGII-------NKIDDETLEITELPIKRWTQDYKEFLEELLTDEKNQLIIDYID 986

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGIL 361
             S+ +        +         E +  +  +++        L     ++ +      IL
Sbjct: 987  NSSHEDVCFTIKMDPIKLKRAEEEGLEKVFKLKSTLTTTNMTLFDPKLKLQRYASELDIL 1046

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
            K++  HR      R ++ +  +++   I+       L
Sbjct: 1047 KDFCFHRLNAYTDRKNYLISKLEKEKRIISNKTKFIL 1083


>gi|159484508|ref|XP_001700298.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
 gi|158272465|gb|EDO98265.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
          Length = 1167

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 132/372 (35%), Gaps = 36/372 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++++   +S    +    + ++ +   +R+IP + DG KP  R+I++A  +  L  
Sbjct: 668  PGTFLDQSADRISYSDFINRELILFSRAD-LDRSIPSMLDGLKPGQRKILYACFKRNLKK 726

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++   V      H HG+ S+  ++V LAQ F       L+   G FG     
Sbjct: 727  D---IKVAQLSAYVAEHSAYH-HGEGSLASTIVNLAQDFVGSNNVNLLHPSGQFGTRLQG 782

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  AA+ RY   R+  +   +    D+  + +      +  EP  +    P +L NG  G
Sbjct: 783  GKDAASARYIYTRLAALTRHLFNENDDQLLTY-LNEEGQSIEPEWYMPILPTVLINGADG 841

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T+IP++N ++I      L++        +  +  G              +   +
Sbjct: 842  IGTGWSTTIPNYNPRDIMANLRRLLEGEAQEA--MHPWYRG---------FNGNIAEAAT 890

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-------IIAKRI 295
            ++ G   + V           G   I +TE+P +       E +  L          +  
Sbjct: 891  HKSGSRSYVVSGTVT----QTGPNTIEITELPIRKWTQDYKEFLETLLRPTEKVRRDEAP 946

Query: 296  PLLEDIRDESAEDVRIVLFPKNRSLDPDLLME--SIFMLSDMETRFPLNMNVLSMGRVPQ 353
             + +     S  +V  V+      ++  L                   NM +     + +
Sbjct: 947  IIADYSEHHSDSNVHFVVELLPGKMEELLASPGGLDGKFKLTTKIATSNMMLFDHSGMIK 1006

Query: 354  VMPLDGILKEWL 365
                  ++    
Sbjct: 1007 HYSSPEMIVAEF 1018


>gi|115392233|gb|ABI96917.1| topoisomerase [Trypanosoma congolense]
          Length = 1439

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 82/408 (20%), Positives = 156/408 (38%), Gaps = 35/408 (8%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ V+    + +  + ++++   ER+IP + DG KP  R+I+ +  +  L
Sbjct: 650  TNINESMNYNVRNVTYSEFVHKELILFSVAD-CERSIPSVVDGLKPGQRKIMFSAFKRNL 708

Query: 67   DFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                   K A++ G V      H HG+QS+  ++V LAQ +      PL+   G FG   
Sbjct: 709  V---RSIKVAQLAGYVSEHAAYH-HGEQSLVQTIVGLAQDYVGANNIPLLHRDGQFGTRL 764

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G   AA RY   R+T +A  I    D+  VD++D  +    EP  +    P +L NGT
Sbjct: 765  QGGKDHAAGRYIFTRLTNIARRIYHPSDDFVVDYKDD-DGLSVEPFYYVPVIPMVLVNGT 823

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            +GI  G AT+IP+++  ++ +    L              + G D              +
Sbjct: 824  AGIGTGFATNIPNYSPLDVIDNLRRL--------------LSGDDLRPMKPWYFGFTGTI 869

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            E    G+  F    R+ V   G     + +TE+P     S+  + + +L   + +    +
Sbjct: 870  EEREKGK--FVSSGRYTVRPDGV----VCITELPIGTWTSQYKKFLEDLREREVVVQYRE 923

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
               +   D        +  +      +           +    N+++  R  ++      
Sbjct: 924  HNTDVTVDFE---VFIHPEVLQQWTNQGCLEDKLQLREYIHATNIIAFDREGRITKYLDA 980

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
                       L   +  R   +++    +  L      ++E++    
Sbjct: 981  ESVLKEFYLVRLEYYARRREFLLEQLQRSVLKLENMVRFVNEVVNGTF 1028


>gi|326473740|gb|EGD97749.1| DNA topoisomerase II [Trichophyton tonsurans CBS 112818]
          Length = 1678

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 160/404 (39%), Gaps = 40/404 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 773  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 831

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 832  KD---VKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 887

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT-YNEEDSEPVVFPSKFPNLLANGT 180
             G  +A+ RY   R++  A  +    DE  +   +   + +  EP  +    P +L NG 
Sbjct: 888  GGSDSASARYIYTRLSPFARRLFHQADEPLL--VNNIDDGKVIEPETYVPVVPLILINGA 945

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +TSIP++N +E+ +    L+   E+   K   +       TG         I+
Sbjct: 946  DGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPW-FRGFKGEVTGSGDRYKFSGII 1004

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---- 296
            +                          + +TE+P         +K+ E+I A+++P    
Sbjct: 1005 K--------------------QTADNEVEITELPICTWTQDFKDKLEEIIKAEKVPSFIK 1044

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
              +D    +     I +  K+     +  +E  F L   +      +   + GR+ +   
Sbjct: 1045 DYKDYNTHTDVHFIIQMEEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITRYET 1103

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 1104 PEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1147


>gi|221110139|ref|XP_002163496.1| PREDICTED: similar to DNA topoisomerase 2 [Hydra magnipapillata]
          Length = 1315

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/478 (15%), Positives = 175/478 (36%), Gaps = 44/478 (9%)

Query: 19   AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             +     +++  + ++ +   +R+IP + DGFKP  R I++   + G        K +++
Sbjct: 813  QIPYSDFIDKDLIFFS-NVDNDRSIPSMIDGFKPSQRMILYCCFKRGRHS--KEVKVSQL 869

Query: 79   VGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYT 132
             G V      H HG+ S+  +++ +AQ F       ++   GNFG     G   A+ RY 
Sbjct: 870  AGYVSENTDYH-HGEASLQGAIIGMAQNFPGSNNINILVPNGNFGYRRKGGKEHASPRYI 928

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSI 191
               +  +A  I +  D++ + +   Y+++   EP VF    P  + NG+ GI  G + ++
Sbjct: 929  FTELHPIANYIFREEDDEILKY--NYDDDMKVEPDVFAPIIPLGIINGSQGIGTGFSNNV 986

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P HN  ++      LI+  +                         +  +E        + 
Sbjct: 987  PPHNPLDVVANLKRLINEKDPVDM--------------LPWYNGFKGTIEKNPKATNKYI 1032

Query: 252  VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
            +R ++C++        I +            IE     +  K     ++++      V  
Sbjct: 1033 IRGKYCIDGNKIHIEDIPIVN--------GWIEPYESKMEQKEDDG-QELQKLYKTGVGN 1083

Query: 312  VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    N +    +   ++F      T++    +VL      ++       + +    +  
Sbjct: 1084 LDKFLNMTQSLSVTNLNMFNSKGKMTKYNSISDVLYEFYEYRLEMYQKRKEFFFLKLQND 1143

Query: 372  LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            L   +       +    + K + IA   + E+IA +  +  PK     R  +       +
Sbjct: 1144 LDISTYKVKFIREY---LAKTIKIAKKKVVEVIAQLETKGYPKMASDHRLPMASRSYRYL 1200

Query: 432  LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
             ++ + +L   +  ++++ +++     ++  +              E+ E   ++ K 
Sbjct: 1201 TDMSIMTLTDDKIKELENNMEHCQMLYDQYLNTP-----IKKIWLNELDEFLSMYKKY 1253


>gi|38453821|dbj|BAD02211.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 81/407 (19%), Positives = 162/407 (39%), Gaps = 46/407 (11%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 642  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 700

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 701  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLLVNNVD-----DGKVIEPETYVPVVPLILI 811

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +E+ +    L+   E+   K   +       TG        
Sbjct: 812  NGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGEELVPMKPW-FRGFKGEVTGSGDRYKFS 870

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP- 296
             I++                          + +TE+P +       +K+ E+I A+++P 
Sbjct: 871  GIIK--------------------QTADNEVEITELPIRTWTQDFKDKLEEIIKAEKVPS 910

Query: 297  ---LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
                 +D    +     I +  K+     +  +E  F L   +      +   + GR+ +
Sbjct: 911  FIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITR 969

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
                + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 970  YETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1016


>gi|38453823|dbj|BAD02212.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 81/407 (19%), Positives = 162/407 (39%), Gaps = 46/407 (11%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 642  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 700

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 701  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLLVNNVD-----DGKVIEPETYVPVVPLILI 811

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +E+ +    L+   E+   K   +       TG        
Sbjct: 812  NGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGEELVPMKPW-FRGFKGEVTGSGDRYKFS 870

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP- 296
             I++                          + +TE+P +       +K+ E+I A+++P 
Sbjct: 871  GIIK--------------------QTADNEVEITELPIRTWTQDFKDKLEEIIKAEKVPS 910

Query: 297  ---LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
                 +D    +     I +  K+     +  +E  F L   +      +   + GR+ +
Sbjct: 911  FIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITR 969

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
                + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 970  YETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1016


>gi|38453825|dbj|BAD02213.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 81/407 (19%), Positives = 162/407 (39%), Gaps = 46/407 (11%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 642  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 700

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 701  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHPADEPLLVNNVD-----DGKVIEPETYVPVVPLILI 811

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +E+ +    L+   E+   K   +       TG        
Sbjct: 812  NGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGEELVPMKPW-FRGFKGEVTGSGDRYKFS 870

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP- 296
             I++                          + +TE+P +       +K+ E+I A+++P 
Sbjct: 871  GIIK--------------------QTADNEVEITELPIRTWTQDFKDKLEEIIKAEKVPS 910

Query: 297  ---LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
                 +D    +     I +  K+     +  +E  F L   +      +   + GR+ +
Sbjct: 911  FIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITR 969

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
                + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 970  YETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1016


>gi|313192238|emb|CBY05927.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|313192246|emb|CBY05931.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 75/94 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           DSAAA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 96


>gi|312192221|gb|ADQ43807.1| topoisomerase IV subunit A [Aerococcus urinae]
          Length = 97

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/97 (55%), Positives = 72/97 (74%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPV RRI++AM   G     AF+KSA+ VG VIG  HPHGD SVY+++VR++
Sbjct: 1   LPDIRDGLKPVQRRILYAMYHDGNTSDHAFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMS 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           Q +  R PLI   GN G++DGD AAA RYTEAR++++
Sbjct: 61  QAWKNRMPLIDMHGNNGSMDGDPAAAMRYTEARLSKL 97


>gi|262190159|ref|ZP_06048441.1| topoisomerase IV subunit A [Vibrio cholerae CT 5369-93]
 gi|262033950|gb|EEY52408.1| topoisomerase IV subunit A [Vibrio cholerae CT 5369-93]
          Length = 381

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 115/367 (31%), Positives = 191/367 (52%), Gaps = 15/367 (4%)

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
           ++GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAIL+ +LR L KLEE +I+ 
Sbjct: 1   MQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAILDTKLRHLAKLEEMKIRG 60

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E D L  E++K++ LL S ++  N +  EI+   + F        RR+   E   A   T
Sbjct: 61  EQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGD-----DRRSPLVEREEAKALT 115

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
            +  M   E ITVV+S +GWIR  K H VD  +L++K GD+        +  + + L +D
Sbjct: 116 ERDLM-PSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSD 174

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G++Y+L +  L S RG GE I   +++     I    + +     LV S  G  F+ +  
Sbjct: 175 GRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGD 234

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENRKLLIFSIDQIPEMSRGKG 686
           ++++  R GK  + +    ++     +     D +  +    ++L+F I  +P++S+GKG
Sbjct: 235 DLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKG 294

Query: 687 VRLQSYKDG-----GISDVICFKICEGLTW-IDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            ++ +                  + +G +  + +  R      +DL  + G+RG  G+L+
Sbjct: 295 NKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERGRRGALL 354

Query: 741 PKGFPRS 747
           P+G  R 
Sbjct: 355 PRGLQRV 361


>gi|255742426|gb|ACU32467.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/96 (56%), Positives = 73/96 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            R+ ++A  ++  ++++ VDF D Y+  +  P V P
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMP 96


>gi|315047873|ref|XP_003173311.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
 gi|311341278|gb|EFR00481.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
          Length = 1672

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 78/406 (19%), Positives = 160/406 (39%), Gaps = 44/406 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ ++  ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 771  KPGTYLDHSMDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVK 829

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 830  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 885

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 886  GGSDSASARYIYTRLSPFARRLFHQADEPLLANNVD-----DGKVIEPETYVPVVPLILI 940

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +++ +    L+   E+   K   +       TG        
Sbjct: 941  NGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGDELVPMKPW-FRGFKGEVTGSGDRYKFS 999

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             I++                      G   + ++E+P +       +K+ E+I A+++P 
Sbjct: 1000 GIIK--------------------QTGDNEVEISELPIRTWTQDFKDKLEEIIKAEKVPS 1039

Query: 298  L-EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQV 354
              +D +D +       +           + E +     +      +  V     GR+ + 
Sbjct: 1040 FIKDYKDYNTHTNVHFIIQMEEKHMKKAVEEGLEEKFKLVKPIATSNMVAFDAEGRITRY 1099

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
               + IL+ + A R ++  +R    +  +  +++ L         I
Sbjct: 1100 ETPEDILRAFYAVRIKLYEKRKQHLLSELQTQLDKLSNQARFVQMI 1145


>gi|313192276|emb|CBY05946.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/97 (55%), Positives = 77/97 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+D+  A+KKSAR+VG+V G+ HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 10  LGMDWNKAYKKSARVVGDVFGEYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 69

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 70  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 106


>gi|38453811|dbj|BAD02206.1| DNA topoisomerase II [Trichophyton quinckeanum]
          Length = 1089

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 161/404 (39%), Gaps = 40/404 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 642  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 700

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 701  KD---VKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT-YNEEDSEPVVFPSKFPNLLANGT 180
             G  +A+ RY   R++  A  +    DE  +   +   + +  EP  +    P +L NG 
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLL--VNNIDDGKVIEPETYVPVVPLILINGA 814

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +TSIP++N +E+ +    L+   E+   K   +       TG         I+
Sbjct: 815  DGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPW-FRGFKGEVTGSGDRYKFSGII 873

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---- 296
            +                          + +TE+P +       +K+ E+I A+++P    
Sbjct: 874  K--------------------QTADNEVEITELPIRTWTQDFKDKLEEIIKAEKVPSFIK 913

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
              +D    +     I +  K+     +  +E  F L   +      +   + GR+ +   
Sbjct: 914  DYKDYNTHTDVHFIIQMEEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITRYET 972

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 973  PEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1016


>gi|195956954|gb|ACG59236.1| GyrA [Acinetobacter baumannii]
          Length = 104

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/100 (57%), Positives = 76/100 (76%)

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RMT++A  +L  
Sbjct: 5   HPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLAD 64

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVG
Sbjct: 65  LEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVG 104


>gi|38453809|dbj|BAD02205.1| DNA topoisomerase II [Arthroderma vanbreuseghemii]
          Length = 1089

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 161/404 (39%), Gaps = 40/404 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 642  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 700

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 701  KD---VKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT-YNEEDSEPVVFPSKFPNLLANGT 180
             G  +A+ RY   R++  A  +    DE  +   +   + +  EP  +    P +L NG 
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLL--VNNIDDGKVIEPETYVPVVPLILINGA 814

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +TSIP++N +E+ +    L+   E+   K   +       TG         I+
Sbjct: 815  DGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPW-FRGFKGEVTGSGDRYKFSGII 873

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---- 296
            +                          + +TE+P +       +K+ E+I A+++P    
Sbjct: 874  K--------------------QTADNEVEITELPIRTWTQDFKDKLEEIIKAEKVPSFIK 913

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
              +D    +     I +  K+     +  +E  F L   +      +   + GR+ +   
Sbjct: 914  DYKDYNTHTDVHFIIQMEEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITRYET 972

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 973  PEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1016


>gi|60686900|gb|AAX35540.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Derby]
          Length = 97

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/96 (55%), Positives = 77/96 (80%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQG
Sbjct: 2   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYHTIVRMAQPFSLRYMLVDGQG 61

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 62  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 97


>gi|25006383|dbj|BAC24011.1| DNA topoisomerase II [Trichophyton interdigitale]
          Length = 1093

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 161/404 (39%), Gaps = 40/404 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 644  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 702

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 703  KD---VKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 758

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT-YNEEDSEPVVFPSKFPNLLANGT 180
             G  +A+ RY   R++  A  +    DE  +   +   + +  EP  +    P +L NG 
Sbjct: 759  GGSDSASARYIYTRLSPFARRLFHQADEPLL--VNNIDDGKVIEPETYVPVVPLILINGA 816

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +TSIP++N +E+ +    L+   E+   K   +       TG         I+
Sbjct: 817  DGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPW-FRGFKGEVTGSGDRYKFSGII 875

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---- 296
            +                          + +TE+P +       +K+ E+I A+++P    
Sbjct: 876  K--------------------QTADNEVEITELPIRTWTQDFKDKLEEIIKAEKVPSFIK 915

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
              +D    +     I +  K+     +  +E  F L   +      +   + GR+ +   
Sbjct: 916  DYKDYNTHTDVHFIIQMEEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITRYET 974

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 975  PEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1018


>gi|328862532|gb|EGG11633.1| hypothetical protein MELLADRAFT_46846 [Melampsora larici-populina
            98AG31]
          Length = 1259

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 87/406 (21%), Positives = 153/406 (37%), Gaps = 38/406 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ NV  +S    + +  + ++++    R+IP + DGFKP  R+++ A  +  L 
Sbjct: 762  EPGTHLDHNVSQISYTEFINKELILFSMADNI-RSIPSMVDGFKPGQRKVLFACFKRKLK 820

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++ G        H HG+QS+  ++V LAQ F       ++S  G FG    
Sbjct: 821  AE---IKVAQLGGYCAEHSAYH-HGEQSLTQTIVALAQNFVGSNNINVLSPNGQFGTRAN 876

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY    + ++   I    D+  +++    +    EP  +    P +L NG+S
Sbjct: 877  GGKDAASARYIFTNIEKITRAIFPPQDDHVLNY-LNDDGAQIEPEWYVPVLPMVLVNGSS 935

Query: 182  GIAVGMATSIPSHNVQEICEA-ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GI  G ++ IP++N  +I E     L D P   I        G   P             
Sbjct: 936  GIGTGWSSDIPNYNPMDIVENLRRKLSDEPLEPIYPWFRGFTGHITPEAP---------- 985

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL--IIAKRIPLL 298
                   G F+V   W           + +TE+P +V      E +        K   L+
Sbjct: 986  -------GKFKVTGEWN----QPDEDTVEITELPIRVWNLTYKELLEAWITSTDKVPALV 1034

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMP 356
            +D R+   E     +          +  + +  +  +         V      ++ +   
Sbjct: 1035 KDYREYHTETTVHFIIQLTDKGKEAIKKDGLEKVFKLTGNVSTTNMVCFDSFGKIKKYST 1094

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
             + IL+++   R E   +R  F +Q +    E L       L I E
Sbjct: 1095 PEEILEDFYDIRLEYYQKRKEFLVQDLTTTYERLSNQARFVLMIIE 1140


>gi|322493315|emb|CBZ28601.1| DNA topoisomerase ii [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1497

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 85/406 (20%), Positives = 156/406 (38%), Gaps = 35/406 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N N  ++ NV+ VS R  +++  + ++++   ER+IP + DGFKP  R+I+ +  +  L 
Sbjct: 647  NVNESMDYNVRQVSYRDFVDKELILFSIAD-CERSIPSVIDGFKPGQRKILFSCFKRNLV 705

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K  ++ G V      H HG+QS+  ++V +AQ F      PL+   G FG    
Sbjct: 706  NS---IKVVQLAGYVSEHSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLH 761

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   AA RY   R+ QVA  I    D+  V+++D  +    EP  +    P +L NGT+
Sbjct: 762  GGKDHAAGRYIFTRLMQVARAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNGTT 820

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N  EI      L+   E+   +                       +E
Sbjct: 821  GIGTGFSTSIPNYNPLEIISNLERLMQGEEVHKMQP--------------WYFGFTGTME 866

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                G+  F    R+ +   G     + +TE+P  V      +    L   +   L+   
Sbjct: 867  EKEPGK--FVSHGRYEIRPDGV----VCITELPIGVWTQTYKK---FLEDMREKELVVQY 917

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            R+ + +         +  +    + + +         +    N+++  +  Q+       
Sbjct: 918  REHTTDVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEYVHATNIIAFNKEGQITKYSDAE 977

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
                      L   +  +   +     +   L      + E++   
Sbjct: 978  SVLKEFYLVRLDYYAKRKQYLLGELRRLTSKLENMVRFVREVVEGT 1023


>gi|41052970|dbj|BAD07880.1| putative DNA topoisomerase II [Oryza sativa Japonica Group]
          Length = 1525

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 115/759 (15%), Positives = 239/759 (31%), Gaps = 65/759 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            S T ++   K +     + +  + ++++ +  R+IP + DG KP  R+I+    +  L  
Sbjct: 671  SGTHLDTEGKYIKYSDFINKELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNLV- 728

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID-- 122
                 K A+  G V      H HG+QS+  ++  +AQ F       L+   G FG  D  
Sbjct: 729  --KEIKVAQFSGYVSEHSAYH-HGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQG 785

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANG 179
            G  AA+ RY    ++ +   I    D    D    Y   + +  EP  +    P +L NG
Sbjct: 786  GKDAASARYIFTLLSPITRSIFPKDD----DILLNYLDEDGQSIEPTWYVPILPMVLVNG 841

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            + GI  G +T IP++N ++I      L++  +  +E +  +  G  F        ++   
Sbjct: 842  SEGIGTGWSTFIPNYNPRDIVANLRRLLN--DEPVEPMDPWYRG--FKGSIQKTGTKAGG 897

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----- 294
            V     G           + E+    W     E    +  +   +   +     +     
Sbjct: 898  VSYTVTGIIEVVDDTTLRITELPIRRWSQDYKEFLISIGGTDKSKDKDKDKGKGKGKVKE 957

Query: 295  --------IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                     P +E     S +     L   ++      L E +     + T        L
Sbjct: 958  KEKKEKDIEPFIEAFDTYSDDKNVEFLITLSKENMAIALQEGLEKKFKLTTTIGTTNMHL 1017

Query: 347  SMGR--VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE-- 402
                  + +    + ILKE+   R E   +R    ++ I+  ++ L   +   L + E  
Sbjct: 1018 FDSNGKIRKYDTPEDILKEFFGLRLEFYEKRKRVLLENIELELKKLSNKVRFILAVVEGD 1077

Query: 403  -IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
             I+   +  +    +    F     +        + ++ + EE +   E  N+ +   + 
Sbjct: 1078 IIVNNRKRAELFVELKQKGFDPFPRKKQRAGPSAVGAIEEDEENEESPEAANVGSSDYEY 1137

Query: 462  DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
               +  G     ++   I E   + ++  +L R R             L     E + + 
Sbjct: 1138 LLSMAIGTLTLERVQQLIAEKGRMENEVAELKRTRPKSL-----WMRDLDAFEKELDALD 1192

Query: 522  VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
               S     R    ++   +A +             +        S+DG A         
Sbjct: 1193 EKDSMDAEERRATRNAGGGAAPNKAAPKRRPRKTATN---TQAAESSDGNAAAPA-VPKP 1248

Query: 582  SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            +      A +  +  + ++D + A    +  K             +E + +   +     
Sbjct: 1249 AAPRKKPAGKASLADSEDEDYIAAIPKPAAQKKQPAKKASTQLSDDEDDEVLALKDRLAA 1308

Query: 642  LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQS----YKDGGI 697
              +    +   +   T +  A  G+  +       +     RG   +  S      D   
Sbjct: 1309 YNLDDHSEDTAMETETTEEQA-KGKKGR------KE--PSKRGAAKKAISSLAVISDDEE 1359

Query: 698  SDVICFKICEGLTWIDSA---GRSYNRSENDLLGWLGKR 733
             + +     +   +        +   +           R
Sbjct: 1360 DETVPIDEDDEDDFAMEEVPVKKGRGKKPAAEKPKAATR 1398


>gi|125583360|gb|EAZ24291.1| hypothetical protein OsJ_08043 [Oryza sativa Japonica Group]
          Length = 1487

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 117/759 (15%), Positives = 241/759 (31%), Gaps = 65/759 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            S T ++   K +     + +  + ++++ +  R+IP + DG KP  R+I+    +  L  
Sbjct: 633  SGTHLDTEGKYIKYSDFINKELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNLV- 690

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID-- 122
                 K A+  G V      H HG+QS+  ++  +AQ F       L+   G FG  D  
Sbjct: 691  --KEIKVAQFSGYVSEHSAYH-HGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQG 747

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANG 179
            G  AA+ RY    ++ +   I    D    D    Y   + +  EP  +    P +L NG
Sbjct: 748  GKDAASARYIFTLLSPITRSIFPKDD----DILLNYLDEDGQSIEPTWYVPILPMVLVNG 803

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            + GI  G +T IP++N ++I      L++  +  +E +  +  G  F        ++   
Sbjct: 804  SEGIGTGWSTFIPNYNPRDIVANLRRLLN--DEPVEPMDPWYRG--FKGSIQKTGTKAGG 859

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----- 294
            V     G           + E+    W     E    +  +   +   +     +     
Sbjct: 860  VSYTVTGIIEVVDDTTLRITELPIRRWSQDYKEFLISIGGTDKSKDKDKDKGKGKGKVKE 919

Query: 295  --------IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                     P +E     S +     L   ++      L E +     + T        L
Sbjct: 920  KEKKEKDIEPFIEAFDTYSDDKNVEFLITLSKENMAIALQEGLEKKFKLTTTIGTTNMHL 979

Query: 347  SMGR--VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE-- 402
                  + +    + ILKE+   R E   +R    ++ I+  ++ L   +   L + E  
Sbjct: 980  FDSNGKIRKYDTPEDILKEFFGLRLEFYEKRKRVLLENIELELKKLSNKVRFILAVVEGD 1039

Query: 403  -IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
             I+   +  +    +    F     +        + ++ + EE +   E  N+ +   + 
Sbjct: 1040 IIVNNRKRAELFVELKQKGFDPFPRKKQRAGPSAVGAIEEDEENEESPEAANVGSSDYEY 1099

Query: 462  DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
               +  G     ++   I E   + ++  +L R R             L     E + + 
Sbjct: 1100 LLSMAIGTLTLERVQQLIAEKGRMENEVAELKRTRPKSL-----WMRDLDAFEKELDALD 1154

Query: 522  VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
               S     R    ++   +A +             +        S+DG A   PA    
Sbjct: 1155 EKDSMDAEERRATRNAGGGAAPNKAAPKRRPRKTATN---TQAAESSDGNAAA-PAVPKP 1210

Query: 582  SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            +      A +  +  + ++D + A    +  K             +E + +   +     
Sbjct: 1211 AAPRKKPAGKASLADSEDEDYIAAIPKPAAQKKQPAKKASTQLSDDEDDEVLALKDRLAA 1270

Query: 642  LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQS----YKDGGI 697
              +    +   +   T +  A  G+  +       +     RG   +  S      D   
Sbjct: 1271 YNLDDHSEDTAMETETTEEQA-KGKKGR------KE--PSKRGAAKKAISSLAVISDDEE 1321

Query: 698  SDVICFKICEGLTWIDSA---GRSYNRSENDLLGWLGKR 733
             + +     +   +        +   +           R
Sbjct: 1322 DETVPIDEDDEDDFAMEEVPVKKGRGKKPAAEKPKAATR 1360


>gi|118398165|ref|XP_001031412.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila]
 gi|89285740|gb|EAR83749.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1416

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/396 (20%), Positives = 165/396 (41%), Gaps = 32/396 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + N+ V+ N+K +  +  ++   + ++ +    R+IP L DG KP  R+I+ +  +  L 
Sbjct: 649  DPNSFVDYNIKQLRYKDFIDRELIHFSNADNL-RSIPSLCDGLKPGQRKILFSCFKRNLK 707

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A+++G V      H HG+QS+  +++ +AQ F       L+   G FG    
Sbjct: 708  SE---IKVAQLIGYVAEHSAYH-HGEQSLASTIIGMAQNFVGSNNINLMMPIGQFGTRNQ 763

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY    ++++  ++    D+  + + +  + +  EP  +    P  L NG+S
Sbjct: 764  GGKEHASARYIFTSLSKITRILFPEHDDHVLKYLED-DNQVVEPEWYMPIIPMCLVNGSS 822

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP++N +EI E     ++       +L  +  G          + +  I  
Sbjct: 823  GIGTGWSTDIPNYNHKEIVEQIRGKLEGK--PFTELHPWYKG---------FQGQIEINP 871

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                 +GG+ V+ ++ ++EV      I +TE+P           + EL+   +     + 
Sbjct: 872  -----KGGYIVKGQYEIDEVE---ETIKITELPVGKWTRDYKNYLEELLSPPKGEPEIED 923

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP-LDGI 360
              E   + R+    +          +    L    T    N+ + +     +       I
Sbjct: 924  IREYHTNNRVHFEVQAIPGRIQQWGDIEKKLKLSTTMQTTNIVMFNDKYKLKRYQSTVEI 983

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
            ++E+ A R +   +R  + +  I R V+IL+  +  
Sbjct: 984  MEEFYALRLKCYQKRKDYLVSKIQRDVDILQNKMKF 1019


>gi|157830305|pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202
 gi|157830349|pdb|1BJT|A Chain A, Topoisomerase Ii Residues 409-1201
          Length = 793

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 84/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 250 EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 308

Query: 68  FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                 K A++   V      H HG+QS+  +++ LAQ F       L+   G FG    
Sbjct: 309 SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 364

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G  AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  
Sbjct: 365 GGKDAAAARYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGAE 423

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GI  G +T IP  N  EI +    L+++ E  +E++  +  G           + E I  
Sbjct: 424 GIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIEP 473

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
                   +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 474 L------RYRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIK 523

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPL 357
           D+ ++   D    +   +            +    + +   L   V     G++ +   +
Sbjct: 524 DMEEQHD-DNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 582

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           + IL E+   R E   +R     + +   VE     +     I E
Sbjct: 583 NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIE 627


>gi|330924028|ref|XP_003300481.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
 gi|311325363|gb|EFQ91408.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
          Length = 1723

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 91/528 (17%), Positives = 187/528 (35%), Gaps = 71/528 (13%)

Query: 19   AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             +S    + +  + ++++    R+IP + DG KP  R++++      +       K   +
Sbjct: 801  DISYDDFVNKELILFSMADNV-RSIPSVIDGLKPGQRKVLYTCFRRNIKKD---VKVVEL 856

Query: 79   VGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYT 132
             G V G      HG+ S+  ++V LAQ F        +   GNFG+    G  AA+ RY 
Sbjct: 857  AGSVSGSTDY-AHGEASMQGTIVNLAQNFVGTNNINFLEPSGNFGSRLKGGADAASARYI 915

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
              R++  A  I  G D+  + + ++ +    EP +F    P +L NG+SGI  G ++ IP
Sbjct: 916  YTRLSPFARRIFHGHDDALLKYGES-DGHKIEPEMFVPILPTILINGSSGIGTGWSSEIP 974

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            + N  +I E     +  P  + E +   I      TG       +         +    V
Sbjct: 975  NFNPMDIIENIKRRMQ-PGATKEDMTPMIPWYKGFTGTTTELGPD-------RYQFTGTV 1026

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
            R          G   + +TE+P +       EK+ E+I A++ P       +     R+ 
Sbjct: 1027 R--------QTGDNEVEITELPVRYWTQDFKEKLEEIIKAEKAPSYIKDYIDYNTPDRVH 1078

Query: 313  LFPKNRSLDPDLLMES----IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
               K         +       F L   ++   L +   + GR+ +   +  I++E+   R
Sbjct: 1079 FIIKMEDKYMAEAVTKGLEEYFKLFKPQSTSNL-VAFDAHGRIHKYATVLDIIEEFYHVR 1137

Query: 369  REVLFRRSSFRMQAIDRRVEILKGLLIAYLN----------------------------- 399
                 +R   ++Q +++    +                                      
Sbjct: 1138 LRYYEKRKQHQLQVMEKEHLKMTNQAKFIQMIIDGKLIVSKKKKAVLVQELKKLGFTPFP 1197

Query: 400  ---IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                 +    + +  + +    +   ++ N  D +L + + SL +    ++  ++     
Sbjct: 1198 KVEEAKQAGEVEDYQEDEASEDADVEVSANDYDYLLGMAIWSLTQERVEKLMKQIGEKQH 1257

Query: 457  EKEKIDSL------LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            E + +  L              ++   ++ E  +   K   + RR + 
Sbjct: 1258 EIDTLIKLSPKDIWKVDLDAFMDEWNLQLEEEVKRKKKIAGITRRASQ 1305


>gi|163931058|pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-Segment Dna
          Length = 759

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 84/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 240 EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 298

Query: 68  FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                 K A++   V      H HG+QS+  +++ LAQ F       L+   G FG    
Sbjct: 299 SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 354

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G  AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  
Sbjct: 355 GGKDAAAARYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGAE 413

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GI  G +T IP  N  EI +    L+++ E  +E++  +  G           + E I  
Sbjct: 414 GIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIEP 463

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
                   +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 464 L------RYRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIK 513

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPL 357
           D+ ++   D    +   +            +    + +   L   V     G++ +   +
Sbjct: 514 DMEEQHD-DNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 572

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           + IL E+   R E   +R     + +   VE     +     I E
Sbjct: 573 NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIE 617


>gi|300176867|emb|CBK25436.2| unnamed protein product [Blastocystis hominis]
          Length = 1573

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 82/410 (20%), Positives = 153/410 (37%), Gaps = 42/410 (10%)

Query: 5    NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            N       ++  V  ++    +++  + ++      R+IP + DG KP  R+++    + 
Sbjct: 674  NQYQPGDYIDYAVDKMAYSDFMDKELIQFSRYD-NARSIPCVVDGLKPSQRKVLFGAFKR 732

Query: 65   GLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN 120
             L       K  +  G V      H HG+QS+ D+++ +AQ F       L    G FG+
Sbjct: 733  KLTSE---IKVVQFSGYVSEHAAYH-HGEQSLNDTIIGMAQDFVGSNNINLFVPAGQFGS 788

Query: 121  I--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNL 175
                G  AA+ RY    ++ +  LI +  D    D    Y     +  EP  +    P +
Sbjct: 789  RLLGGKDAASPRYIYTYLSPITRLIFKEDD----DLLCNYLVEEGQSIEPEFYLPIIPMV 844

Query: 176  LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
            L NG  GI  G +T IP++N  EI    +A ++N +    +L  +  G    TG I    
Sbjct: 845  LVNGAEGIGTGYSTKIPNYNPVEIANYIIAKLNNEKP--PELHPWWRG---FTGDIYKRP 899

Query: 236  RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-IAKR 294
            +            G+ +R R             V+TE+P         + + E++   K+
Sbjct: 900  K------------GYLIRGRIT----KVDDLTYVITELPIGRWTQDYKQILTEMMLPEKK 943

Query: 295  IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN--MNVLSMGRVP 352
             P++ D ++   +                L  + ++    +E     +      S G++ 
Sbjct: 944  APVIADFKENHTDTTVHFTVMLTPEQAQALQGQDLYKFFKLEAAITTSNFNLFSSTGQIT 1003

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
                   I+ E+   R      R  F +   ++ +  L  +    L + E
Sbjct: 1004 HYASPQHIIDEFFEFRLPYYQERKDFLLAKFEKEIRRLSNMTRFILEVVE 1053


>gi|313192254|emb|CBY05935.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 54/98 (55%), Positives = 77/98 (78%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           GDSAAA RYTE R+ ++A  ++  ++++ VDF + Y+ 
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVEQYDG 99


>gi|125540787|gb|EAY87182.1| hypothetical protein OsI_08583 [Oryza sativa Indica Group]
          Length = 1486

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 111/742 (14%), Positives = 230/742 (30%), Gaps = 92/742 (12%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            S T ++   K +     + +  + ++++ +  R+IP + DG KP  R+I+    +  L  
Sbjct: 633  SGTHLDTEGKYIKYSDFINKELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNLV- 690

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID-- 122
                 K A+  G V      H HG+QS+  ++  +AQ F       L+   G FG  D  
Sbjct: 691  --KEIKVAQFSGYVSEHSAYH-HGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQG 747

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANG 179
            G  AA+ RY    ++ +   I    D    D    Y   + +  EP  +    P +L NG
Sbjct: 748  GKDAASARYIFTLLSPITRSIFPKDD----DILLNYLDEDGQSIEPTWYVPILPMVLVNG 803

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            + GI  G +T IP++N ++I      L++  +  +E +  +  G  F        ++   
Sbjct: 804  SEGIGTGWSTFIPNYNPRDIVANLRRLLN--DEPVEPMDPWYRG--FKGSIQKTGTKAGG 859

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----- 294
            V     G           + E+    W     E    +  +   +   +     +     
Sbjct: 860  VSYTVTGIIEVVDDTTLRITELPIRRWSQDYKEFLISIGGTDKSKDKDKDKGKGKGKVKE 919

Query: 295  --------IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                     P +E     S +     L   ++      L E +     + T        L
Sbjct: 920  KEKKEKDIEPFIEAFDTYSDDKNVEFLITLSKENMAIALQEGLEKKFKLTTTIGTTNMHL 979

Query: 347  SMGR--VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE-- 402
                  + +    + ILKE+   R E   +R    ++ I+  ++ L   +   L + E  
Sbjct: 980  FDSNGKIRKYDTPEDILKEFFGLRLEFYEKRKRVLLENIELELKKLSNKVRFILAVVEGD 1039

Query: 403  -IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
             I+   +  +    +    F     +        + ++ + EE +   E  N+ +   + 
Sbjct: 1040 IIVNNRKRAELFVELKQKGFDPFPRKKQRAGPSAVGAIEEDEENEESPEAANVGSSDYEY 1099

Query: 462  DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
               +  G     ++   I E   + ++  +L  +RT    +   D    ++ +   +   
Sbjct: 1100 LLSMAIGTLTLERVQQLIAEKSRMENEVAEL--KRTRPKSLWMRDLDAFEKELDALDEKD 1157

Query: 522  VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP----- 576
             + +                A   +          A  +      +        P     
Sbjct: 1158 SMDAEERRATRNAGGGAAPKAAPKRRPRKTATNTQAAESSDGNAAAPAVPKPAAPRKKPA 1217

Query: 577  -----AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS------------ 619
                 A +                    +   T    D   ++L +              
Sbjct: 1218 GKASLADSEDEDYVAAIPKPAAQKKQPAKKASTQLSDDEDDEVLALKDRLAAYNLDDHSE 1277

Query: 620  -----------KGNAFIVEESEIIANTRKGKTFLK----VSSEEKMKLVVKVTGDHVAVV 664
                       +       +    +     K  +     +S +E+ + V     D     
Sbjct: 1278 DTAMETETTEEQAKGKKGRKE--PSKRGAAKKAISSLAVISDDEEDETVPIDEDDEDD-- 1333

Query: 665  GENRKLLIFSIDQIPE-MSRGK 685
                    F+++++P    RGK
Sbjct: 1334 --------FAMEEVPVKKGRGK 1347


>gi|291234700|ref|XP_002737286.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Saccoglossus
            kowalevskii]
          Length = 1649

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 165/444 (37%), Gaps = 46/444 (10%)

Query: 3    VDNISNSNTLVEENVKAVSLRFALEERYLAYA-LSTIKERAIPDLRDGFKPVHRRIIHAM 61
             D +S+     ++  + +S    + +  + ++ +    ER+IP + DG KP  R+++   
Sbjct: 692  EDGLSDLYLYNKDT-RYISYNDFVNKELVLFSNMD--NERSIPSMVDGLKPGQRKVLFTC 748

Query: 62   SEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGN 117
             +          K A++ G V      H HG+ S+  +++ LAQ F       L+   G 
Sbjct: 749  FKRN---DKREVKVAQLAGSVAEHSAYH-HGEASLMGTIINLAQNFVGSNNLNLLQPIGQ 804

Query: 118  FGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT-----YNEEDSEPVVFPS 170
            FG     G  AA+ RY    ++ +A L++   D+              + +  EP  +  
Sbjct: 805  FGTRLHGGKDAASPRYIFTMLSPLARLLMPASDD------PNLTQLFDDNQRIEPEWYCP 858

Query: 171  KFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGG 230
              P +L NG  GI  G +T I +++V+EI      +ID  E            P  P+  
Sbjct: 859  IIPMVLVNGAEGIGTGWSTKIANYDVREIVANIRLMIDGEEPL----------PMLPSYK 908

Query: 231  IIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
                + E I          +       + +        +   +  QV K  ++E +    
Sbjct: 909  GYKGAIEEI------EANRYACSGEIAIVDNNTLEITELPVRVWTQVYKETVLEPMLH-G 961

Query: 291  IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SM 348
              K  PL+ D ++   +    ++   +         + +  +  ++    +  +VL  S 
Sbjct: 962  SEKVQPLITDYKEYHTDTTVKIVVKMSDEKLLKAEEQGLHKVFKLQNTISVTNSVLFDSH 1021

Query: 349  GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ--AIDRRVEILKGLLIAYLNIDEIIAI 406
            G + +   +  ILKE+   R E    R  +     A +      +   I     ++I+  
Sbjct: 1022 GCIKKYDDIMEILKEFFELRLERYRIRKEYLEGLLAAESNKLDNQARFILEKIENKIVIE 1081

Query: 407  IRNEDKPKPVMVSRFSLTENQVDA 430
             +++     ++V R   ++     
Sbjct: 1082 NKSKRDLISMLVQRGYDSDPIKAW 1105


>gi|296809619|ref|XP_002845148.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
 gi|238844631|gb|EEQ34293.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
          Length = 1676

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 159/402 (39%), Gaps = 36/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ + + ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 770  KPGTYLDHSTEQITYSDFINKELILFSMADNI-RSIPSVIDGLKPGQRKVLYTMFKRNVR 828

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 829  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 884

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +T + +  EP  +    P +L NG  
Sbjct: 885  GGSDSASARYIYTRLSPFARRLFHPADEPLL-VNNTDDGKVIEPETYVPVVPLILINGAD 943

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +++      L+   E+   K   +       TG         I++
Sbjct: 944  GIGTGWSTSIPNYNPEDVVANLKRLMAGEELVPMKPW-FRGFKGEVTGSGDRYKFSGIIK 1002

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
                                  G   + +TE+P +       +++ E+I A ++P   +D
Sbjct: 1003 --------------------QTGDNEVEITELPIRTWTQDFKDRLEEIIKADKVPSFIKD 1042

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
             +D +       +   +       L E +     +      +  V     GR+ +    +
Sbjct: 1043 YKDYNTHTNVHFIIQMDEKHMKKALEEGLEEKFKLIKPIATSNMVAFDAEGRITRYETPE 1102

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             IL+ + A R ++  RR    +  +  +++ L         I
Sbjct: 1103 DILQAFYAVRIKLYERRKQHLLSQLQSQLDKLSNQARFVQMI 1144


>gi|66814704|ref|XP_641531.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|166210410|sp|P90520|TOP2M_DICDI RecName: Full=DNA topoisomerase 2, mitochondrial; Short=DNA
            topoisomerase II; Flags: Precursor
 gi|60469558|gb|EAL67548.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1284

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 169/411 (41%), Gaps = 42/411 (10%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            ++ +  ++ ++K ++    + +  + Y+ +    R+IP L DG KP  R+I+ A  +  L
Sbjct: 775  TDMSQGIDHSIKEITYPDFINKELIHYSWAANL-RSIPSLIDGLKPGQRKILFASFKRRL 833

Query: 67   DFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                   K +++ G V  +   H HG+QS+  ++V++A  F      PL++  G FG   
Sbjct: 834  TNE---IKVSQLSGYVAEQTSYH-HGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRL 889

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED---SEPVVFPSKFPNLLA 177
              G  +A+ RY   ++  VA  +   +D    D    Y EE+    +P  +    P LL 
Sbjct: 890  QGGSDSASARYIFTKLEPVARYLFNELD----DPLLNYLEEEGESIQPDYYIPIIPMLLV 945

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG+ GI VGM+TSIP  +  +I +  L L  N +++++KL+ +  G              
Sbjct: 946  NGSEGIGVGMSTSIPLFSPIDIID-QLMLRLNNQVALKKLIPWYRG-------------- 990

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
                +    R  +R         +      + +TE+P     S   E + +LI    I  
Sbjct: 991  -FKGTISPDRHTYRTNGV-----IKLVGRNLEITELPIGRWTSDYKEVLNDLIDKDVIKS 1044

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             ++   E++    I+L         DL    +  L  +      ++         Q +  
Sbjct: 1045 FQESNTENSVHFTILLNNNQLEQMEDLTENELIKLFKLSASLNFHLTCFDENSKIQKL-- 1102

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
               ++E +    +V  +    R + + + ++     L   +   E+IA  +
Sbjct: 1103 -ESVEEIIDQFYKVRLQFYGKRREYLLKSLDNQIKRLTTTIQFLEVIASGK 1152


>gi|157871926|ref|XP_001684512.1| DNA topoisomerase ii [Leishmania major]
 gi|68127581|emb|CAJ05684.1| DNA topoisomerase ii [Leishmania major strain Friedlin]
          Length = 1497

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 85/406 (20%), Positives = 156/406 (38%), Gaps = 35/406 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N N  ++ NV+ VS R  +++  + ++++   ER+IP + DGFKP  R+I+ +  +  L 
Sbjct: 647  NVNESMDYNVRQVSYRDFVDKELILFSIAD-CERSIPSVIDGFKPGQRKILFSCFKRNLV 705

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K  ++ G V      H HG+QS+  ++V +AQ F      PL+   G FG    
Sbjct: 706  NS---IKVVQLAGYVSEHSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLH 761

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   AA RY   R+ QVA  I    D+  V+++D  +    EP  +    P +L NGT+
Sbjct: 762  GGKDHAAGRYIFTRLMQVARAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNGTT 820

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N  EI      L+   E+   +                       +E
Sbjct: 821  GIGTGFSTSIPNYNPLEIISNLERLMRGEEVHKMQP--------------WYFGFTGTME 866

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                G+  F    R+ +   G     + +TE+P  V      +    L   +   L+   
Sbjct: 867  EKEPGK--FISHGRYEIRPDGV----VCITELPIGVWTQAYKK---FLEDMREKELVVQY 917

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            R+ + +         +  +    + + +         +    N+++  +  Q+       
Sbjct: 918  REHTTDVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEYVHATNIIAFNKEGQITKYSDAE 977

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
                      L   +  +   +     +   L      + E++   
Sbjct: 978  SVLKEFYLVRLDYYAKRKQYLLGELRRLTSKLENMVRFVREVVEGT 1023


>gi|255553522|ref|XP_002517802.1| DNA topoisomerase II, putative [Ricinus communis]
 gi|223543074|gb|EEF44609.1| DNA topoisomerase II, putative [Ricinus communis]
          Length = 1212

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 153/398 (38%), Gaps = 22/398 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T +E+  K +     + +  + ++++   +R+IP + DG KP  R+I+ +  +  L  
Sbjct: 380 PGTHLEQKNKLIKYSDFINKELILFSVAD-LQRSIPSMVDGLKPAQRKILFSCFKRNLVK 438

Query: 69  GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                K  ++ G V  +   H HG+QS+  ++V +AQ F       L++ +G FG     
Sbjct: 439 D---LKVVQLQGYVSEQSAYH-HGEQSLQSTIVGMAQNFVGSNNINLLAPKGQFGTRCSG 494

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           G   A+ RY    ++ +   +    D+  +D+    +    EP  +    P +L NG  G
Sbjct: 495 GKDHASPRYIYTCLSPITRFLFPKDDDCLLDY-LQEDGLSIEPTWYAPIIPLVLVNGCEG 553

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           I  G +T IP++N ++I       ++  ++             F        S+E     
Sbjct: 554 IGTGWSTFIPNYNPRDIVANLRRFLNGEKMEPMHPW----YKGFKGTIEKSASKEGGGSY 609

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              G           + E+    W     +    V ++   EK        +   ++D R
Sbjct: 610 AVNGIIEEVNETTVRITELPIRRWTDEYKDFLNSVIENVRDEK----GNLPKDAFIKDFR 665

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGI 360
               +         +      +  E +     + T    +   L   +  + +    + I
Sbjct: 666 KYGDDVSVCFEVLLSEEKMKQVKDEGLLKKFKLATTISTSNMHLFDPKGVIKKYDSPEEI 725

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           L+E++  R E+  +R +F++ +++    IL+  +   L
Sbjct: 726 LEEFVHLRFELYEKRKNFKLASLEMEALILENKVRFIL 763


>gi|38453813|dbj|BAD02207.1| DNA topoisomerase II [Arthroderma simii]
 gi|38453815|dbj|BAD02208.1| DNA topoisomerase II [Arthroderma simii]
          Length = 1089

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 161/404 (39%), Gaps = 40/404 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 642  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 700

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 701  KD---VKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT-YNEEDSEPVVFPSKFPNLLANGT 180
             G  +A+ RY   R++  A  +    DE  +   +   + +  EP  +    P +L NG 
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLL--VNNIDDGKVIEPETYVPVVPLILINGA 814

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +TSIP++N +E+ +    L+   E+   K   +       TG         I+
Sbjct: 815  DGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPW-FRGFKGEVTGSGDRYKFSGII 873

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---- 296
            +                          + +TE+P +       +K+ E+I A+++P    
Sbjct: 874  K--------------------QTADNEVEITELPIRTWTQDFKDKLEEIIKAEKVPSFIK 913

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
              +D    +     I +  K+     +  +E  F L   +      +   + GR+ +   
Sbjct: 914  DYKDYNTHTDVHFIIQMDEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITRYET 972

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 973  PEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1016


>gi|21326979|gb|AAM48110.1|AF500123_1 gyrase [Salmonella enterica subsp. enterica serovar Mbandaka]
          Length = 96

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 76/96 (79%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 96


>gi|38453803|dbj|BAD02202.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1086

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 80/407 (19%), Positives = 163/407 (40%), Gaps = 46/407 (11%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ ++  ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 640  KPGTYLDHSMDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVK 698

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 699  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 754

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 755  GGSDSASARYIYTRLSPFARRLFHQADEPLLVNNVD-----DGKVIEPETYVPVVPLILI 809

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +++ +    L+   E+   K   +       TG        
Sbjct: 810  NGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGDELVPMKPW-FRGFKGEVTGSGDRYKFS 868

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP- 296
             I++                      G   + ++E+P +       +K+ E+I A+++P 
Sbjct: 869  GIIK--------------------QTGDNEVEISELPIRTWTQDFKDKLEEIIKAEKVPS 908

Query: 297  ---LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
                 +D    +     I +  K+     +  +E  F L   +      +   + GR+ +
Sbjct: 909  FIKDYKDYNTHTNVHFIIQMEEKHMKKAVEEGLEEKFKLVK-QIATSNMVAFDAEGRITR 967

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
                + IL+ + A R ++  +R    +  +  +++ L         I
Sbjct: 968  YETPEDILRAFYAVRIKLYEKRKQHLLSELQTQLDKLSNQARFVQMI 1014


>gi|313192274|emb|CBY05945.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 80/103 (77%), Gaps = 1/103 (0%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++A S +G D+  A+KKSAR+VG+VIGK +PHGD +VY ++VR+AQPF  RY L+ GQGN
Sbjct: 5   LYA-SRIGHDWNKAYKKSARVVGDVIGKYNPHGDSAVYYTIVRMAQPFSLRYMLVDGQGN 63

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           FG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 64  FGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 106


>gi|238507856|ref|XP_002385129.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
 gi|220688648|gb|EED45000.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
          Length = 1717

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 88/513 (17%), Positives = 181/513 (35%), Gaps = 29/513 (5%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V  +S    + +  + ++++    R+IP + DG KP  R++++      L 
Sbjct: 762  KPGTFLDHSVSKISYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRNLK 820

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 821  KD---MKVVELAGHVSGMTAYQ-HGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQ 876

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    D+  + + +  + E  EP ++    P +L NG  
Sbjct: 877  GGSDCASARYIYTRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGAD 935

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY-IIGPDFPTGGIIVESRESIV 240
            GI  G ++SIP++N ++I +    L+D  E    +       G     GG   +    I 
Sbjct: 936  GIGTGWSSSIPNYNPEDIVDNLKRLMDGEETRPMQPWFRGFTGEVTDVGGDRFKFSGIIK 995

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS-RLIEKIAELIIAKRIPLLE 299
            E+         +  R   ++       I+  E      K  +      +L        L 
Sbjct: 996  ETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKLDEKNMKSALS 1055

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN-VLSMGRVPQVMPLD 358
            +  +E  +  + V      + DP+  +     + D+   F           +  Q+  L 
Sbjct: 1056 EGLEEKFKLSKTVATTNLVAFDPEGRITKYATVDDILKEFYTYRLKFYEKRKQYQLSQLQ 1115

Query: 359  GILKEWLAHRREVLFRRSSFR-MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
              L +     R V         +    + V + +     Y    ++   ++  ++ + V 
Sbjct: 1116 KELDKLSNQARFVQEIIDGKLVVSKKKKNVLVQELKDKGYKAFPKVAEAVKAGEEERVVE 1175

Query: 418  VSRFSLTEN-------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL------ 464
                              D +L + + SL +    +++ ++     E + +  +      
Sbjct: 1176 EDDDESDSQDTEVLSSAYDYLLGMAIWSLTQERVEKLRRQIGEKEVEVDALIKMSKEDIW 1235

Query: 465  LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
                     +   ++ +      K   +GRR +
Sbjct: 1236 KRDLDDFIAEWRFQLEDEHRRQRKVAMMGRRTS 1268


>gi|297039743|pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo
 gi|297039748|pdb|3L4K|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Metal-Bound
          Length = 722

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 91/474 (19%), Positives = 176/474 (37%), Gaps = 54/474 (11%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 238 EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 296

Query: 68  FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                 K A++   V      H HG+QS+  +++ LAQ F       L+   G FG    
Sbjct: 297 SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 352

Query: 122 DGDSAAAYR-YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            G  AAA R Y    + ++   I    D+    +    +E+  EP  +    P +L NG 
Sbjct: 353 GGKDAAAARXYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGA 411

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GI  G +T IP  N  EI +    L+++ E  +E++  +  G           + E I 
Sbjct: 412 EGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIE 461

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLL 298
                    +R+  R        G   + +TE+P +   S + E   +      K  P +
Sbjct: 462 PL------RYRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWI 511

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMP 356
           +D+ ++   D    +   +            +    + +   L   V     G++ +   
Sbjct: 512 KDMEEQHD-DNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNS 570

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE-------------I 403
           ++ IL E+   R E   +R     + +   VE     +     I E             I
Sbjct: 571 VNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAII 630

Query: 404 IAIIRNEDKPKPVMVSRFSLTEN---QVDAILNLRLRSLRKLEEYQIKSELDNL 454
             +              +  +E      + +L +R+ SL K    ++  +    
Sbjct: 631 QELENLGFPRFNKEGKPYYGSEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEK 684


>gi|313192240|emb|CBY05928.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 56/94 (59%), Positives = 76/94 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           DSAAA RYTE R+ ++A  ++  ++++ VDF DT
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDT 96


>gi|212531355|ref|XP_002145834.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
 gi|210071198|gb|EEA25287.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
          Length = 1696

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 87/519 (16%), Positives = 195/519 (37%), Gaps = 34/519 (6%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ + K ++    + +  + ++++  + R+IP + DG KP  R++++   +  L 
Sbjct: 773  KPGTFLDHSTKQITYTDFINKELILFSMADNQ-RSIPSVVDGLKPGQRKVLYTCFKRNLK 831

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HG+ S+  ++V LAQ F        +   GNFG+   
Sbjct: 832  KD---MKVVELAGHVSGMTAYQ-HGETSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQ 887

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    DE  + + +  + E  EP ++    P +L NG  
Sbjct: 888  GGADCASARYIYTRLSPFARRVFNQQDEPLLTYNED-DGEKIEPELYVPVVPLILINGAD 946

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY-IIGPDFPTGGIIVESRESIV 240
            GI  G ++SIP++N ++I      ++D  E    +       G   P G    +    I 
Sbjct: 947  GIGTGWSSSIPNYNPEDIVANLKRMMDGEEPEPMQPWFRGFNGEVTPQGPDRYKFSGRIH 1006

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS-------RLIEKIAELIIAK 293
            E          +  R   ++       I+  E      K          +  + ++    
Sbjct: 1007 ELNDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKH 1066

Query: 294  RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM-ETRFPLNMNVLSMGRVP 352
                +++  +E  +  R +      + DP+  +     +SD+ +  F + +      +  
Sbjct: 1067 LKAAVDEGLEEKFKLSRTIATTNLVAFDPEGRITKYATVSDILKEFFAVRLKYYERRKQH 1126

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE-ILKGLLIAYLNIDEIIAIIRNE- 410
            Q+  L   L ++    R +        + +  ++   I +     +    ++   ++   
Sbjct: 1127 QLSELQKQLDKFTNQARFIQMIIDGKLVVSKKKKATLITELKEKGFKPFPKVAEAVKAGE 1186

Query: 411  -----DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL- 464
                 ++ +    +   +  N  D +L + + SL +    ++  ++ +   E +++  L 
Sbjct: 1187 TEQVVEEEESSEEANTEMASNAYDYLLGMAIWSLTQERVEKLLRQIGDKEVEIDELIKLS 1246

Query: 465  -----LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
                         N+   ++ E      K   LGRR+++
Sbjct: 1247 KEEIWRRDLDGFINEWRFQLEEEHRRERKVASLGRRQSS 1285


>gi|38453819|dbj|BAD02210.1| DNA topoisomerase II [Trichophyton verrucosum]
          Length = 1089

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 80/407 (19%), Positives = 162/407 (39%), Gaps = 46/407 (11%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 642  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 700

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 701  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLLVNNVD-----DGKVIEPETYVPVVPLILI 811

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +E+ +    L+   E+   K   +       +G        
Sbjct: 812  NGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGEELVPMKPW-FRGFKGEVSGSGDRYKFS 870

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP- 296
             I++                          + +TE+P +       +K+ E+I A+++P 
Sbjct: 871  GIIK--------------------QTADNEVEITELPIRTWTQDFKDKLEEIIKAEKVPS 910

Query: 297  ---LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
                 +D    +     I +  K+     +  +E  F L   +      +   + GR+ +
Sbjct: 911  FIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITR 969

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
                + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 970  YETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1016


>gi|38453817|dbj|BAD02209.1| DNA topoisomerase II [Trichophyton tonsurans]
          Length = 1089

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 160/404 (39%), Gaps = 40/404 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 642  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 700

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 701  KD---VKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT-YNEEDSEPVVFPSKFPNLLANGT 180
             G  +A+ RY   R++  A  +    DE  +   +   + +  EP  +    P +L NG 
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLL--VNNIDDGKVIEPETYVPVVPLILINGA 814

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +TSIP++N +E+ +    L+   E+   K   +       TG         I+
Sbjct: 815  DGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPW-FRGFKGEVTGSGDRYKFSGII 873

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---- 296
            +                          + +TE+P         +K+ E+I A+++P    
Sbjct: 874  K--------------------QTADNEVEITELPICTWTQDFKDKLEEIIKAEKVPSFIK 913

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
              +D    +     I +  K+     +  +E  F L   +      +   + GR+ +   
Sbjct: 914  DYKDYNTHTDVHFIIQMEEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITRYET 972

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             + IL+ + A R ++  +R  + +  +  +++ L         I
Sbjct: 973  PEDILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMI 1016


>gi|320580632|gb|EFW94854.1| DNA topoisomerase II [Pichia angusta DL-1]
          Length = 1372

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 156/400 (39%), Gaps = 33/400 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ N+  + +   + +  + ++++    R+IP + DGFKP  R++++ + +  L  
Sbjct: 707  PGTFLDPNLTEIPISEFINKELILFSMADNI-RSIPSVMDGFKPTQRKVLYGVYKRNLTS 765

Query: 69   GAAFKKSARIVGEVIGK---LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                 K A++VG  IG+    H HG+ S+  +++ LAQ F       ++   G FG+   
Sbjct: 766  E---IKVAQLVGY-IGEHSGYH-HGEASLTQTIISLAQDFVGSNNLNILKPNGGFGSRAS 820

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  A+A RY    +T +   +   +D   +++    +E+  EP  +    P +L NG+ 
Sbjct: 821  GGKDASAARYIFTEVTPITRKVYNTLDNPLLNY-LQDDEQTVEPQWYVPVLPMILVNGSE 879

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP  N  +I +   AL              + G +        +  E  + 
Sbjct: 880  GIGSGWSTQIPPFNPVDIVKNIRAL--------------MNGEEMVDMIPWFKGWEGTIS 925

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
              R+G   FR+     +EE+   +  I            +     A     K+ P ++D+
Sbjct: 926  --RIGPDKFRMEG--NIEEIDDTTVEITELPARMWTITMKEFLLQAIAGSDKQKPWIKDM 981

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGI 360
             ++    ++ V+      ++    +        +      NM          +   ++ I
Sbjct: 982  EEQHGVGIKFVVTLSKEEMEKTRRIGLKERFKLISIINTSNMVAFDPQGRIKKYDHVNQI 1041

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            ++++   R +   RR  +       + E L         I
Sbjct: 1042 IEDYYLVRLDYYQRRKDYMADLFSNQFEKLSYQAKFVKMI 1081


>gi|38453801|dbj|BAD02201.1| DNA topoisomerase II [Arthroderma incurvatum]
          Length = 1086

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 76/406 (18%), Positives = 161/406 (39%), Gaps = 44/406 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ ++  ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 640  KPGTYLDHSMDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 698

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 699  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 754

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 755  GGSDSASARYIYTRLSPFARRLFHQADEPLLVNNVD-----DGKVIEPETYVPVVPLILI 809

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +++ +    L+   E+   K   +       TG        
Sbjct: 810  NGADGIGTGWSTSIPNYNPEDVVDNLKRLMVGDELVPMKPW-FRGFKGEVTGSGDRYKFS 868

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             I++                      G   + ++E+P +       +K+ ++I A+++P 
Sbjct: 869  GIIK--------------------QTGDNEVEISELPIRTWTQDFKDKLEDIIKAEKVPS 908

Query: 298  L-EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQV 354
              +D +D +       +   +       + E +     +  +   +  V     GR+ + 
Sbjct: 909  FIKDYKDYNTHTNVHFIIQMDEKHMKKAVEEGLEEKFKLVKQIATSNMVAFDAEGRITRY 968

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
               + IL+ +   R ++  +R    +  +  +++ L         I
Sbjct: 969  ETPEDILRAFYTVRIKLYEKRKQHLLSELQTQLDKLSNQARFVQMI 1014


>gi|154340639|ref|XP_001566276.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063595|emb|CAM39778.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1501

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 83/406 (20%), Positives = 154/406 (37%), Gaps = 35/406 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N N  ++ +V+ VS R  +++  + ++++   ER+IP   DGFKP  R+I+ +  +  L 
Sbjct: 647  NVNESMDYSVRQVSYRDFVDKELILFSIAD-CERSIPSAIDGFKPGQRKILFSCFKRNLV 705

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K  ++ G V      H HG+QS+  ++V +AQ F      PL+   G FG    
Sbjct: 706  NS---IKVVQLAGYVSEHSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLH 761

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   AA RY   R+  VA  I    D+  V+++D  +    EP  +    P +L NGT+
Sbjct: 762  GGKDHAAGRYIFTRLMHVARAIFHPADDFVVEYKDD-DGLSVEPFYYIPVIPMVLVNGTT 820

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N  E+      L+   E+   +                       +E
Sbjct: 821  GIGTGFSTSIPNYNPLEVIRNLERLMRGEEVHKMQP--------------WYFGFTGTME 866

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                G+  F    R+ V   G     + +TE+P  V      +    L   +   L+   
Sbjct: 867  EKEPGK--FISHGRYEVRPDGV----VCITELPIGVWTQTYKK---FLEDMREKELVVQY 917

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            R+ + +         +  +    + + +         +    N+++  +  Q+       
Sbjct: 918  REHTTDVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEYVHATNIIAFNKEGQITKYWDAE 977

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
                      L   +  +   +     +   L      + E++   
Sbjct: 978  SVLKDFYLVRLDYYAKRKDYLLGELRRLTSKLENMVRFVREVVEGT 1023


>gi|253762209|gb|ACT35556.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 97

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 54/97 (55%), Positives = 74/97 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDYAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
            R+ ++A  ++  ++++ VDF D Y+  +  P V P+
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPT 97


>gi|304373560|ref|YP_003858305.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB16]
 gi|299829516|gb|ADJ55309.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB16]
          Length = 428

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 97/449 (21%), Positives = 180/449 (40%), Gaps = 41/449 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             S++  ++   L +AL TI  RAIP L DGFKPVHR  IH+ ++ G      F+K A I
Sbjct: 2   ERSIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFIHSAAKGG----TGFQKVASI 57

Query: 79  VGEV-IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            G V +   H HG+ SV ++L  +A  +    PL    G FG+       A RY + +++
Sbjct: 58  AGGVAMYGYH-HGETSVEEALSLMAAHWCNNIPLFERDGFFGSRLVKKPGAPRYIKCKLS 116

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            + + I    D          + E   P  +    P +L NG SGIA   AT+IP H+  
Sbjct: 117 PLFKAIYMDEDLT----LPHEDPEHVPPAYYLPIIPMVLVNGFSGIAKAYATNIPPHDPV 172

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
            +    ++ ++  + +++    +  G                            +  ++ 
Sbjct: 173 SVLNGCVSYLNGKDFTLDLKYPHFKGD----------------------IENGTMYGKYE 210

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++    G   +V+TEIP +  + + I  + +L     I   +D+  E             
Sbjct: 211 LQ----GKTKLVITEIPVKYDRVKYISILDKLEEKGYIVSYKDLSKE----DFRYEITLK 262

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R     L  E I     +      N+NV+  G++      + +LK+++  R  V  +R  
Sbjct: 263 REYANGLTREKILKDFGLIENSNPNINVIFNGKLHSYERPETLLKDFVDIRIGVYQQRID 322

Query: 378 FRMQAIDRRVEILKGLLIAYL-NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
            R+Q     ++     +      I +  A+          +VS ++  EN  + ++ + +
Sbjct: 323 KRIQETKEALDKALAKVDFIDQMIAQPDALKGLSRSEAVKLVSTWAGCENHAEILVAMNI 382

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
             L   E  +++ E + L  + +  +   
Sbjct: 383 YHLTTDERQKLEDEANELRKQLKYWEETT 411


>gi|307110827|gb|EFN59062.1| hypothetical protein CHLNCDRAFT_137783 [Chlorella variabilis]
          Length = 1566

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 129/344 (37%), Gaps = 25/344 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++     +S    + +  + ++ +   ER+IP++ DG KP  R+I+ A  +  L  
Sbjct: 662 PGTFLDHTADTISYSQFVHKELILFSRAD-LERSIPNMVDGLKPGQRKIMFACFKRNLKT 720

Query: 69  GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                K +++ G V      H HG+ S+  ++V LAQ F        +  QG FG     
Sbjct: 721 D---VKVSQLSGYVSEHSAYH-HGEASLSGTIVGLAQDFVGSNNVNYLVPQGQFGTRLQG 776

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           G  AA+ RY   R+  +   +    D+  + +      +  EP  +    P +L NG  G
Sbjct: 777 GKDAASPRYIFTRLAPLTRHLFNEHDDRLLAY-LNEEGQSIEPEWYMPVVPTVLVNGAEG 835

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           I  G +TSIP+ N ++I      ++D  +    K                 +     V +
Sbjct: 836 IGTGWSTSIPNFNPRDIVANLRLMLDGEQPVAMKPWY-----------RGFKGTIEEVPT 884

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              G+          V++       + + +          +E++ +       P ++D +
Sbjct: 885 KTSGKSYQICGVINQVDDTTLDITELPIRKWTQDY--KEFLEEMVKPEDKNATPFIQDYK 942

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +   + V       + S   + L   +     ++T+      +L
Sbjct: 943 EYHTDLVVHFRVTLSESKMREALAAGLLDKFKLKTKISTGNMML 986


>gi|313192256|emb|CBY05936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 76/98 (77%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 3   RIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSID 62

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           GDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 63  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 100


>gi|38453805|dbj|BAD02203.1| DNA topoisomerase II [Arthroderma fulvum]
          Length = 1086

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 78/406 (19%), Positives = 161/406 (39%), Gaps = 44/406 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ ++  ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 640  KPGTYLDHSMDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 698

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 699  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 754

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 755  GGSDSASARYIYTRLSPFARRLFHQADEPLLVNNVD-----DGKVIEPETYVPVVPLILI 809

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +++ +    L+   E+   K   +       TG        
Sbjct: 810  NGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGDELVPMKPW-FRGFKGEVTGSGDRYKFS 868

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             I++                      G   + ++E+P +       +K+ E+I A+++P 
Sbjct: 869  GIIK--------------------QTGDNEVEISELPIRTWTQDFKDKLEEIIKAEKVPS 908

Query: 298  L-EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQV 354
              +D +D +       +           + E +     +  +   +  V     GR+ + 
Sbjct: 909  FIKDYKDYNTHTNVHFIIQMEEKHMKKAVEEGLEEKFKLVKQIATSNMVAFDPEGRITRY 968

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
               + IL+ + A R ++  +R    +  +  +++ L         I
Sbjct: 969  ETPEDILRAFYAVRIKLYEKRKQHLLSELQTQLDKLSNQARFVQMI 1014


>gi|124108693|gb|ABM90923.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 95

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 75/94 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           DSAAA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 95


>gi|167391639|ref|XP_001739872.1| DNA topoisomerase [Entamoeba dispar SAW760]
 gi|165896290|gb|EDR23749.1| DNA topoisomerase, putative [Entamoeba dispar SAW760]
          Length = 1351

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 74/403 (18%), Positives = 156/403 (38%), Gaps = 40/403 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + NT ++++V ++S    + +  + ++     ER+IP + DG KP  R+++    E  + 
Sbjct: 642  DPNTYLDQDVDSISYEDFVHKELILFS-YDDCERSIPSVVDGLKPSQRKVLWTCLEKNIM 700

Query: 68   FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K +++ G V  K   H HG+ S+  ++V +AQ F        +   G FG+   
Sbjct: 701  ---KELKVSQLSGLVSEKSSYH-HGEVSLQATIVNMAQNFCGSNNVNWLLPSGQFGSRLG 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   AA RY   R++ ++  +    D+  +++    +    EP  +    P +L NG  
Sbjct: 757  GGKDQAAARYIYTRLSSISRYLCPKDDDQILEYLVDED-RRIEPKYYCPIIPTVLVNGAD 815

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T++ ++N  ++ +                  Y+ G +F             + 
Sbjct: 816  GIGTGWSTAVSNYNPLDLVD--------------NCRRYLNGEEFKEMKPWFRGWTGQLR 861

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
              + G  G+    +W           I +TE+P Q+      + + + I AK +    + 
Sbjct: 862  KNKDG-SGYDCYGKWR----RLADDKIEITELPIQIWTDTYKQHLEKCIEAKIVKGYSEY 916

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
                     +        L   +  E I+    + +        L     ++ +   +  
Sbjct: 917  H-------MVNTVHFVIDLVQPMSDEDIWTNLKLVSSVKTTNMHLFNSEYKITKYHTVLD 969

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            IL E+   R +    R    +++++R++ IL   +     + E
Sbjct: 970  ILAEFCDVRMKGYEERKKAIIESMERQLMILSNKVRFIKMVIE 1012


>gi|119196923|ref|XP_001249065.1| hypothetical protein CIMG_02836 [Coccidioides immitis RS]
          Length = 1635

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 78/519 (15%), Positives = 174/519 (33%), Gaps = 36/519 (6%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V  ++    + +  + ++++    R+IP + DG KP  R++++AM +  + 
Sbjct: 695  KPGTYLDHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYAMFKRNVK 753

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HG+ S+  ++V LAQ F        +   GNFG+   
Sbjct: 754  KD---MKVVELGGYVSGMTAYQ-HGEASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 809

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT-YNEEDSEPVVFPSKFPNLLANGT 180
             G   A+ RY   R++  A  I    DE  +  +    + +  EP V+    P +L NG 
Sbjct: 810  GGSDCASARYIHTRLSPFARRIFHAADEPLL--KSNIDDGKVIEPEVYVPVVPMILINGA 867

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL---------------EYIIGPD 225
             GI  G +TSIP+ N ++I      L+D   +   K                 ++     
Sbjct: 868  DGIGTGWSTSIPNFNPEDIVANLRRLMDGESLVPMKPWFRGFTGEVTASGDRYKFSGIIK 927

Query: 226  FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK 285
                  +  +   I    +  +       +          +    T            + 
Sbjct: 928  QTGDCEVEITELPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKDYNTHSKVHFIIQMDEKH 987

Query: 286  IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
            + + +        +  +  +  +  +    + R    D   + +     +  RF      
Sbjct: 988  MKKALEDGLEERFKLSKTIATTN-MVAFDAEGRITKYDTAEDILKAFYAVRIRFYEKRKQ 1046

Query: 346  LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
              + ++ + +        ++    +     S  R   +   ++      I          
Sbjct: 1047 HLLAQLHKELDKFTNQARFVQMIIDGKLVISKKRKAKLIEELKEKGFKPIPKAVDAAKEG 1106

Query: 406  IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL- 464
                  + +        L+ +  D +L + L SL +    ++  ++ +   E + +  L 
Sbjct: 1107 ENEPAVEEEEESEEDEQLSSDVFDYLLGMPLWSLTQERVEKLLRQIGDKELEIDALIKLS 1166

Query: 465  -----LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
                      +   +   ++ + +    K+   GRR +T
Sbjct: 1167 KEDLWKRDLDEFITEWRNQLEDEERRAKKARSYGRRTST 1205


>gi|322500572|emb|CBZ35649.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1498

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 84/406 (20%), Positives = 156/406 (38%), Gaps = 35/406 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N N  ++ NV+ VS R  +++  + ++++   ER+IP + DGFKP  R+I+ +  +  L 
Sbjct: 647  NVNESMDYNVRQVSYRDFVDKELILFSIAD-CERSIPSVIDGFKPGQRKILFSCFKRNLV 705

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K  ++ G V      H HG+QS+  ++V +AQ F      PL+   G FG    
Sbjct: 706  NS---IKVVQLAGYVSEHSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLH 761

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   AA RY   R+ QV+  I    D+  V+++D  +    EP  +    P +L NGT+
Sbjct: 762  GGKDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNGTT 820

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N  EI      L+   E+   +                       +E
Sbjct: 821  GIGTGFSTSIPNYNPLEIISNLERLMRGEEVHKMQP--------------WYFGFTGTME 866

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                G+  F    R+ +   G     + +TE+P  V      +    L   +   L+   
Sbjct: 867  EKEPGK--FVSHGRYEIRPDGV----VCITELPIGVWTQAYKK---FLEDMREKELVVQY 917

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            R+ + +         +  +    + + +         +    N+++  +  Q+       
Sbjct: 918  REHTTDVTVDFEVFLHPQVLEQWVSQDVVEERLQLKEYVHATNIIAFNKEGQITKYSDAE 977

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
                      L   +  +   +     +   L      + E++   
Sbjct: 978  SVLKEFYLVRLDYYAKRKQYLLGELRRLTSKLENMVRFVREVVEGT 1023


>gi|242772741|ref|XP_002478098.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
 gi|218721717|gb|EED21135.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
          Length = 1678

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 86/534 (16%), Positives = 187/534 (35%), Gaps = 54/534 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ + K ++    + +  + ++++  + R+IP + DG KP  R++++   +  + 
Sbjct: 773  KPGTFLDHSTKQITYTDFINKELILFSMADNQ-RSIPSVVDGLKPGQRKVLYTCFKRNVK 831

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 832  KD---MKVVELAGHVSGMTAYQ-HGDTSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQ 887

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    DE  + + +  + E  EP ++    P +L NG  
Sbjct: 888  GGADCASARYIYTRLSPFARRVFHQADEPLLTYNED-DGEKIEPELYVPVVPLILINGAD 946

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N +E+      ++D  E    +                    +   E
Sbjct: 947  GIGTGWSSSIPNYNPEEVVANLKRMMDGEEPEPMQP--------------WFRGFKG--E 990

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP----L 297
              + G   ++                + +TE+P +       +K+ ++I A++ P     
Sbjct: 991  VTQQGPDRYKFSGLIKEVSDKE----VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKD 1046

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML-----------SDMETRFPLNMNVL 346
             +D    +     I +  K+        +E  F L            D E R      V 
Sbjct: 1047 YKDYNTHTKVHFVIQMDEKHLKAAVSEGLEEKFKLSRTIATSNLVAFDPEGRITKYATVS 1106

Query: 347  SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
             + +         +  ++   R++         +     +   ++ ++   L I +    
Sbjct: 1107 DILKE-----FYAVRLKYYERRKQHQLSELQKELDKFTNQARFVQMIIDGKLVISKKKKP 1161

Query: 407  IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
            +   +  +        ++E          +      EE  ++   +            L 
Sbjct: 1162 VLIAELKEKGFKPFPKVSEAVKAGETEQVVEEDESSEEANVEVASNAYDYLLGMAIWSLT 1221

Query: 467  SG--KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                ++   QI  +  E+ E+   S +   RR     ++       ++   E++
Sbjct: 1222 QERVEKLLRQIGEKETEIDELIKLSKEDIWRRDLDDFINEWRFQLEEEQRRERK 1275


>gi|25006389|dbj|BAC24014.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1091

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 78/406 (19%), Positives = 160/406 (39%), Gaps = 44/406 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ ++  ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 643  KPGTYLDHSMDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVK 701

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 702  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 757

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 758  GGSDSASARYIYTRLSPFARRLFHQADEPLLANNVD-----DGKVIEPETYVPVVPLILI 812

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +++ +    L+   E+   K   +       TG        
Sbjct: 813  NGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGDELVPMKPW-FRGFKGEVTGSGDRYKFS 871

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             I++                      G   + ++E+P +       +K+ E+I A+++P 
Sbjct: 872  GIIK--------------------QTGDNEVEISELPIRTWTQDFKDKLEEIIKAEKVPS 911

Query: 298  L-EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQV 354
              +D +D +       +           + E +     +      +  V     GR+ + 
Sbjct: 912  FIKDYKDYNTHTNVHFIIQMEEKHMKKAVEEGLEEKFKLVKPIATSNMVAFDAEGRITRY 971

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
               + IL+ + A R ++  +R    +  +  +++ L         I
Sbjct: 972  ETPEDILRAFYAVRIKLYEKRKQHLLSELQTQLDKLSNQARFVQMI 1017


>gi|21326981|gb|AAM48111.1|AF500124_1 gyrase [Salmonella enterica subsp. enterica serovar Braenderup]
          Length = 97

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 78/97 (80%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           IDGDSAAA RYTE R+ ++A  ++  ++++ VDF DT
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDT 97


>gi|124108707|gb|ABM90930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 75/94 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           DSAAA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 94


>gi|169606618|ref|XP_001796729.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
 gi|111065066|gb|EAT86186.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
          Length = 1705

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 136/374 (36%), Gaps = 32/374 (8%)

Query: 19   AVSLRFALEERYLAYALSTIKE--RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             +S    + + ++ ++   I +  R+IP + DG KP  R++++      +       K  
Sbjct: 789  EISYDDFVNKEFILFS---IADNLRSIPSVMDGLKPGQRKVLYTCFRRNIKKD---VKVV 842

Query: 77   RIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYR 130
             + G V G      HG+ S+  ++V LAQ F        +   GNFG+    G  AA+ R
Sbjct: 843  ELAGSVSGSTDY-AHGEASMQGTIVGLAQNFVGSNNINYLEPSGNFGSRLRGGADAASAR 901

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
            Y   R++  A  +    D+  + + ++ +    EP +F    P +L NG+SGI  G ++ 
Sbjct: 902  YIYTRLSPFARRLFHAHDDALLKYGES-DGHKIEPEMFIPVLPTILVNGSSGIGTGWSSE 960

Query: 191  IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
            IP+ N  +I +              +L +     D        +      E+    R  F
Sbjct: 961  IPNFNPMDIIDNIR----------IRLQDGASKEDMKPMTPWYKGFTGTTETLAADRFQF 1010

Query: 251  RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
                R        G   + VTE+P +       EK+ ++I A++ P       +     R
Sbjct: 1011 TGTIR------QTGENELEVTELPVRYWTQDFKEKLEDIIKAEKTPAFIKDYIDYNTPDR 1064

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +    K         ++     +          N+++     ++     +L         
Sbjct: 1065 VHFIIKMEDKHMLNAVQKGLEETFKLYSKQSTSNLVAFDAQGRIHKYASVLDIMEEFYHV 1124

Query: 371  VLFRRSSFRMQAID 384
             L      +   ++
Sbjct: 1125 RLRYYEKRKQHQLE 1138


>gi|294661428|ref|YP_003579881.1| DNA topoisomerase II medium subunit [Klebsiella phage KP15]
 gi|292660589|gb|ADE34837.1| DNA topoisomerase II medium subunit [Klebsiella phage KP15]
          Length = 428

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 101/449 (22%), Positives = 182/449 (40%), Gaps = 41/449 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             S++  ++   L +AL TI  RAIP L DGFKPVHR  IH+  + G      F+K A I
Sbjct: 2   ERSIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFIHSAMQGG----TGFQKVASI 57

Query: 79  VGEV-IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            G V +   H HG+ SV ++L  +A  +    PL    G FG+       A RY + +++
Sbjct: 58  AGGVAMYGYH-HGETSVEEALSLMAAHWCNNIPLFDRDGFFGSRLVKKPGAPRYIKCKLS 116

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            + + I    D   V      + E   P  +    P +L NG SGIA   AT+IP H+ +
Sbjct: 117 PIFKAIYMDGDLTPVH----EDPEHVPPAYYLPIIPMVLVNGFSGIAKAYATNIPPHDPK 172

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
            +    +A +++ + +++    Y  G               I +    G   + ++ +  
Sbjct: 173 SVVNGCIAYLNDKDFTLDLKYPYFKG--------------EITDGTIYG--TYELQGKTK 216

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
                     +V+TEIP +  + + I  + +L     I   +D+  E             
Sbjct: 217 ----------LVITEIPVKYDRVKYIAILDKLEEKGVIVSYKDLSKE----DFRYEVTLK 262

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R     L  E I     +      N+NV+  G++      + +LK+++  R  V  +R +
Sbjct: 263 REYANGLTREKILKDFGLIENSNPNINVIFEGKLYSYERPETLLKDFVDIRMNVYQQRIN 322

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKPKPVMVSRFSLTENQVDAILNLRL 436
            R+Q     ++     +     + E    +R          VS +   EN  + ++ + +
Sbjct: 323 KRIQETKEALDKALAKVAFIAQMVESPDSLRGLSRSEAVKFVSTWIGCENHAEMLVAMNI 382

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
             L   E  +++ E + L  + +  +   
Sbjct: 383 YHLTTDERKKLEDEAEELRKQLKYWEETT 411


>gi|33322684|gb|AAQ07076.1|AF496389_1 DNA gyrase subunit A [Lactobacillus delbrueckii subsp. lactis]
          Length = 103

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 78/103 (75%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  AA RYTEA
Sbjct: 1   SARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPAAMRYTEA 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           RM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL 
Sbjct: 61  RMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLV 103


>gi|38453799|dbj|BAD02200.1| DNA topoisomerase II [Arthroderma obtusum]
          Length = 1086

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 80/407 (19%), Positives = 159/407 (39%), Gaps = 46/407 (11%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 640  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 698

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 699  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 754

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 755  GGSDSASARYIYTRLSPFARRLFHQSDEPLLVNNVD-----DGKVIEPETYVPVVPLILI 809

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +++ +    L+   E+   K   +       TG        
Sbjct: 810  NGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGEELVPMKPW-FRGFKGEVTGSGDRYKFS 868

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP- 296
             I++                          + +TE+P +       +K+ E+I A ++P 
Sbjct: 869  GIIK--------------------QTADNEVEITELPIRTWTQDFKDKLEEIIKADKVPS 908

Query: 297  ---LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
                 +D    +     I +  K+     +  +E  F L   +      +   + GR+ +
Sbjct: 909  FIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITR 967

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
                + IL+ + A R ++  +R    +  +   ++ L         I
Sbjct: 968  YETPEDILRAFYAVRIKLYEKRKQHLLSELQTHLDKLSNQARFVQMI 1014


>gi|67463753|pdb|1ZI0|A Chain A, A Superhelical Spiral In Escherichia Coli Dna Gyrase A C-
           Terminal Domain Imparts Unidirectional Supercoiling Bias
 gi|67463754|pdb|1ZI0|B Chain B, A Superhelical Spiral In Escherichia Coli Dna Gyrase A C-
           Terminal Domain Imparts Unidirectional Supercoiling Bias
          Length = 307

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 83/244 (34%), Gaps = 8/244 (3%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                V         + +      SA   KE D +   L A+T D IL  S+ G+ Y++ 
Sbjct: 10  SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 69

Query: 577 AGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI 631
              L        G  I  L+ L  ++ I        ++   K+ + ++ G       +E 
Sbjct: 70  VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 129

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRL 689
                 GK  +K+   +++  V   +G D V +     K++ F    +  M     GVR 
Sbjct: 130 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 189

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               +G     +     +G   + +    Y +           R   G +  K   R+G 
Sbjct: 190 IRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGL 248

Query: 750 FLSS 753
            + +
Sbjct: 249 VVGA 252



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 6   VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 65

Query: 671 LIFSIDQIPEMSRG-KG---VRLQSYKDGGISDVI--CFKICEGLTWIDSAGRSYNRSEN 724
               + Q+PE +RG +G   V L   +       I    +  EG+    +      +   
Sbjct: 66  YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 125

Query: 725 DLLGWLGKRGGVGSLVPK 742
                  +    G +  K
Sbjct: 126 LTEFNRLR--TAGKVAIK 141



 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 2/150 (1%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++  ++  +  +   EGD +   +       IL  + +G
Sbjct: 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 217

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                      +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 218 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277

Query: 631 IIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
           I    R   G   ++ + +E +  + +V  
Sbjct: 278 ISIVGRNTQGVILIRTAEDENVVGLQRVAE 307


>gi|29165277|gb|AAO65579.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Reading]
          Length = 95

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 55/95 (57%), Positives = 76/95 (80%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|260807655|ref|XP_002598624.1| hypothetical protein BRAFLDRAFT_67020 [Branchiostoma floridae]
 gi|229283897|gb|EEN54636.1| hypothetical protein BRAFLDRAFT_67020 [Branchiostoma floridae]
          Length = 1181

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 126/340 (37%), Gaps = 35/340 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++    + +  + ++ S   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 153 LTFNEFVHKELVLFSNSD-NERSIPSLVDGLKPGQRKVLFTCLKRN---DKREVKVAQLA 208

Query: 80  GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
           G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  AA+ RY  
Sbjct: 209 GSVAEMSAYH-HGETSLMGTIINLAQNFVGSNNVNLLQPIGQFGTRIHGGKDAASPRYIF 267

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
             ++ +A  +    DE  ++++   + +  EP  +    P +L NG  GI  G +T +P+
Sbjct: 268 TMLSTLARKLFNTFDEPMLNYQYD-DNQKIEPEWYIPLIPMVLVNGAEGIGTGWSTKVPN 326

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           ++V+EI    L +ID  +               P        +  I E        F   
Sbjct: 327 YDVREIINNMLRMIDGKDP-------------LPMNPSYKNFKGDIEELEE---NRFVAN 370

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE---KIAELIIAKRIPLLEDIRDESAEDVR 310
               + +       I +TE+P +       E   ++      K   ++ D ++   +   
Sbjct: 371 GEVAILDNNT----IEITELPIRTWTQNYKESVLEVMLHGTEKTPSMITDYKEYHTDTTV 426

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
             +               +  +  +++       VL    
Sbjct: 427 RFVVSMTEEQLMKAEAAGLHKVFKLQSNIASTNMVLFDHN 466


>gi|7437445|pir||T10466 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) II - malaria
            parasite (Plasmodium falciparum)
 gi|3980316|emb|CAA55900.1| DNA topoisomerase (ATP-hydrolysing) [Plasmodium falciparum]
          Length = 1397

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 70/390 (17%), Positives = 146/390 (37%), Gaps = 34/390 (8%)

Query: 10   NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L   
Sbjct: 707  GSYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLRNE 765

Query: 70   AAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                K A++VG +      H HG+ S+  +++ +AQ F        +   G FG+    G
Sbjct: 766  ---CKVAQLVGYIAEHSAYH-HGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGG 821

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A+A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI
Sbjct: 822  KDASAARYIFTKLASSTRSIFNEYDDPILKY-LNEEGQKIEPQYYIPVIPTILVNGCEGI 880

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++ IP++N ++I +     I+               P  P      + +  I  + 
Sbjct: 881  GTGYSSFIPNYNYKDIIDNIKRYINKE-------------PLIPMVPWYKDFKGRIESNG 927

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
            + G     +            +  + +TE+P +       E + EL+  ++  L+ D  D
Sbjct: 928  KTGYETIGII-------NKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYID 980

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
             S+ +        + +       E +  +  +++        L    + ++      L  
Sbjct: 981  NSSHEDICFTIKMDPAKLQKAEEEGLEKVFKLKSTLTTTNMTLFDPNL-KLQRYSTELDI 1039

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
                  + L      R   +  ++E  K +
Sbjct: 1040 LKEFCYQRLK-AYENRKSYLISKLEKEKRI 1068


>gi|114145437|ref|NP_001041456.1| transcription factor [Ciona intestinalis]
 gi|93003262|tpd|FAA00214.1| TPA: transcription factor protein [Ciona intestinalis]
          Length = 1538

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 84/569 (14%), Positives = 193/569 (33%), Gaps = 49/569 (8%)

Query: 3    VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
             D       L   + + +S    + +  + ++ +   ER++P L DG KP  R++++   
Sbjct: 668  DDRPEPGTDLYSADTRTLSYSDFINKELVMFSCAD-LERSVPSLCDGLKPGQRKVLYTCL 726

Query: 63   EMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNF 118
                       K A++ G V  +   H HG+QS+  +++ +AQ +       L+   G F
Sbjct: 727  RRN---DKREVKVAQLAGSVAELSAYH-HGEQSLLGTIINMAQNYVGSNNLNLLQPIGQF 782

Query: 119  GNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G     G  AA+ RY    ++ +  L+   VDE+ + ++   + +  EP  +    P +L
Sbjct: 783  GTRLHGGKDAASPRYIFTMLSPLTRLLFPQVDENLLTWQYD-DNQKVEPSWYCPIIPTVL 841

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NGT GI  G +T +P+H+++E+ +    LI+  E            P  P+      + 
Sbjct: 842  VNGTEGIGTGWSTRVPNHDIREVVKNIKRLINGEEPV----------PMLPSYKNFRGTI 891

Query: 237  ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---LIIAK 293
            E +          + V     + +       + +TE+P +       E + E       K
Sbjct: 892  EEV------EANRYVVSGEAALIDD----QTVEITELPIKSWTQAYKESVLEPLVAGTDK 941

Query: 294  RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
                + + ++ + +     L          +    +     ++     N  ++      +
Sbjct: 942  APQQILEYKEYNTDITVRFLVKMGADKLKTMERSGLHKFLSLQNSLSCNNTLVLFDEFGR 1001

Query: 354  VMPLDGILKEWLAHRRE--------------VLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
            +   +  ++  L   +               +L   ++         VE ++G +  +  
Sbjct: 1002 LRKFNTTVEILLEFYKIRSKLYEKRKDFLTGLLTAEAAKLTNQARFIVEKIEGKISIFNK 1061

Query: 400  IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
              +++  +  ++      V  +  +  +               +           +    
Sbjct: 1062 PKKVLIKMLVDNNYDSDPVKAWKNSIAKKVEERASDEEEEEVEDNKGPDFNYILSMPLWS 1121

Query: 460  KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
                  +   +Q +    E+ E+K+       L        E+ + ++   + AM+  E 
Sbjct: 1122 LSKERKDELLKQRDAKCGELEELKKKTPTRLWLDDLDKFMEELDKVEQKEREDAMMSTED 1181

Query: 520  ITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 +  G     K   V+       E 
Sbjct: 1182 APKKKTMFGVKGRGKGKMVEKKETKPSED 1210


>gi|38453807|dbj|BAD02204.1| DNA topoisomerase II [Arthroderma persicolor]
          Length = 1086

 Score =  196 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 79/407 (19%), Positives = 161/407 (39%), Gaps = 46/407 (11%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 640  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 698

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 699  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 754

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 755  GGSDSASARYIYTRLSPFARRLFHQADEPLLVNNVD-----DGKVIEPETYVPVVPLILI 809

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +++ +    L+   E+   K   +       TG        
Sbjct: 810  NGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGEELVPMKPW-FRGFKGEVTGSGDRYKFS 868

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP- 296
             I++                          + ++E+P +       +K+ E+I A+++P 
Sbjct: 869  GIIK--------------------QTADNEVEISELPIRTWTQDFKDKLEEIIKAEKVPS 908

Query: 297  ---LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
                 +D    +     I +  K+     +  +E  F L   +      +   + GR+ +
Sbjct: 909  FIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITR 967

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
                + IL+ + A R ++  +R    +  +  +++ L         I
Sbjct: 968  YETPEDILRAFYAVRIKLYEKRKQHLLSELQTQLDKLSNQARFIQMI 1014


>gi|25006391|dbj|BAC24015.1| DNA topoisomerase II [Epidermophyton floccosum]
          Length = 1091

 Score =  196 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 82/407 (20%), Positives = 163/407 (40%), Gaps = 46/407 (11%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 642  KPGTYLDHSTDHITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 700

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 701  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDE----DAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             G  +A+ RY   R++  A  +    DE    + VD     + +  EP  +    P +L 
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLLVNNVD-----DGKVIEPETYVPVVPLILI 811

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G +TSIP++N +++ +    L+   E+   K   +       TG        
Sbjct: 812  NGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGEELVPMKPW-FRGFKGEVTGSGDRYKFS 870

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP- 296
             I++                      G   + +TE+P +       +K+ E+I A+++P 
Sbjct: 871  GIIK--------------------QTGDSEVEITELPIRTWTQDFKDKLEEIIKAEKVPS 910

Query: 297  ---LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
                 +D    +     I +  K+     +  +E  F L   +      +   + GR+ +
Sbjct: 911  FIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVK-QIATSNMVAFDAEGRITR 969

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
                + IL+ + A R ++  +R  + +  +  R++ L         I
Sbjct: 970  YETPEDILRAFYAVRIKLYEKRKQYLLSELQTRLDKLSNQARFVQMI 1016


>gi|124809097|ref|XP_001348490.1| DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
 gi|23497385|gb|AAN36929.1|AE014821_16 DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
          Length = 1472

 Score =  196 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 70/390 (17%), Positives = 146/390 (37%), Gaps = 34/390 (8%)

Query: 10   NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L   
Sbjct: 707  GSYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLRNE 765

Query: 70   AAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                K A++VG +      H HG+ S+  +++ +AQ F        +   G FG+    G
Sbjct: 766  ---CKVAQLVGYIAEHSAYH-HGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGG 821

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A+A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI
Sbjct: 822  KDASAARYIFTKLASSTRSIFNEYDDPILKY-LNEEGQKIEPQYYIPVIPTILVNGCEGI 880

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++ IP++N ++I +     I+               P  P      + +  I  + 
Sbjct: 881  GTGYSSFIPNYNYKDIIDNIKRYINKE-------------PLIPMVPWYKDFKGRIESNG 927

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
            + G     +            +  + +TE+P +       E + EL+  ++  L+ D  D
Sbjct: 928  KTGYETIGII-------NKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYID 980

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
             S+ +        + +       E +  +  +++        L    + ++      L  
Sbjct: 981  NSSHEDICFTIKMDPAKLQKAEEEGLEKVFKLKSTLTTTNMTLFDPNL-KLQRYSTELDI 1039

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
                  + L      R   +  ++E  K +
Sbjct: 1040 LKEFCYQRLK-AYENRKSYLISKLEKEKRI 1068


>gi|255718235|ref|XP_002555398.1| KLTH0G08338p [Lachancea thermotolerans]
 gi|238936782|emb|CAR24961.1| KLTH0G08338p [Lachancea thermotolerans]
          Length = 1436

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 147/405 (36%), Gaps = 37/405 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                 ++  +  + +   + +  + ++L+    R+IP + DGFKP  R+++++  +  L 
Sbjct: 655  EPGNTLDPTLSEIPICDFINKELILFSLADNV-RSIPSVLDGFKPGQRKVLYSCFKRKLK 713

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A+++G V      H HG+QS+  ++V +AQ +       L+   G FG    
Sbjct: 714  SE---IKVAQLIGYVSEHTSYH-HGEQSLAQTIVGMAQDYVGSNNIYLLKPNGAFGTRAA 769

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +AA RY    +  +   I   +D   + +    ++        P   P +L NG  
Sbjct: 770  GGKDSAAPRYIFTELNNITPNIFNPLDNPLLTYLQEDDQTIEPQWYLPV-IPMILVNGAE 828

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IP  N  EI +    L              + G             E    
Sbjct: 829  GIGTGWSTNIPCFNPLEIVQNIKKL--------------MNGEPMDDMAPFYRGWEG--R 872

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
              ++    +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 873  LQKIDGQRYRMYGRIE----QVGPRTLEITELPAKTWISTIKEHLLLGLAGNEKTKPWIK 928

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPL 357
            D++ E+                 +      +    + +   L   V     GR+ +   +
Sbjct: 929  DMQ-ENHGATIKFTVELTDEEMQNTRRIGFYERFKLVSTISLANMVAFDPNGRIKKYEDV 987

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
              IL ++   R E   +R     + +  +VE L         I E
Sbjct: 988  RDILSDFYYVRLEYFQKRKDHMSERLQWQVEKLSQQTRFIKLIVE 1032


>gi|209163761|gb|ACI40588.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163763|gb|ACI40589.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163765|gb|ACI40590.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163767|gb|ACI40591.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163769|gb|ACI40592.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163771|gb|ACI40593.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163773|gb|ACI40594.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163775|gb|ACI40595.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163777|gb|ACI40596.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163779|gb|ACI40597.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163781|gb|ACI40598.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163783|gb|ACI40599.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163785|gb|ACI40600.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163787|gb|ACI40601.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163789|gb|ACI40602.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163791|gb|ACI40603.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163793|gb|ACI40604.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163795|gb|ACI40605.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163797|gb|ACI40606.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163799|gb|ACI40607.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163801|gb|ACI40608.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163803|gb|ACI40609.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163805|gb|ACI40610.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163807|gb|ACI40611.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163809|gb|ACI40612.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163811|gb|ACI40613.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163813|gb|ACI40614.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163815|gb|ACI40615.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163817|gb|ACI40616.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163819|gb|ACI40617.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163821|gb|ACI40618.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163823|gb|ACI40619.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163825|gb|ACI40620.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163827|gb|ACI40621.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163829|gb|ACI40622.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163831|gb|ACI40623.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163833|gb|ACI40624.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163835|gb|ACI40625.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163837|gb|ACI40626.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163839|gb|ACI40627.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163841|gb|ACI40628.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163843|gb|ACI40629.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163845|gb|ACI40630.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163847|gb|ACI40631.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163849|gb|ACI40632.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163851|gb|ACI40633.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163853|gb|ACI40634.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163855|gb|ACI40635.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163857|gb|ACI40636.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163859|gb|ACI40637.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163863|gb|ACI40639.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163867|gb|ACI40641.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163869|gb|ACI40642.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163873|gb|ACI40644.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163875|gb|ACI40645.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163877|gb|ACI40646.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163879|gb|ACI40647.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163881|gb|ACI40648.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163883|gb|ACI40649.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163885|gb|ACI40650.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163887|gb|ACI40651.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163889|gb|ACI40652.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163891|gb|ACI40653.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163893|gb|ACI40654.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163895|gb|ACI40655.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163901|gb|ACI40658.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163903|gb|ACI40659.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163905|gb|ACI40660.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163907|gb|ACI40661.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163909|gb|ACI40662.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163911|gb|ACI40663.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163913|gb|ACI40664.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163915|gb|ACI40665.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163917|gb|ACI40666.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163919|gb|ACI40667.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163921|gb|ACI40668.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163923|gb|ACI40669.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163925|gb|ACI40670.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163927|gb|ACI40671.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163929|gb|ACI40672.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163931|gb|ACI40673.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163933|gb|ACI40674.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163935|gb|ACI40675.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163937|gb|ACI40676.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163939|gb|ACI40677.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163941|gb|ACI40678.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163949|gb|ACI40682.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163951|gb|ACI40683.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163953|gb|ACI40684.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163957|gb|ACI40686.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163959|gb|ACI40687.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163961|gb|ACI40688.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163963|gb|ACI40689.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163965|gb|ACI40690.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163967|gb|ACI40691.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163969|gb|ACI40692.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163975|gb|ACI40695.1| DNA gyrase subunit A [Clostridium septicum]
          Length = 231

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 91/234 (38%), Positives = 148/234 (63%), Gaps = 3/234 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ +++D V+F   ++ E+ EP V PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIAAEMLRDINKDTVNFIPNFDGEEKEPEVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  + LIDNPE +I +L+  I GPDFPTG   +  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIMLIDNPESTILELMTVIKGPDFPTGA-TIMGKSGIRAAYETGKGRVIV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE       I+VTEIPYQV K++LIE IA+L+  K+I  + D+RDES  +   +
Sbjct: 120 RAKAEIEEEN-NRHRIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDREGMRI 178

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    +  +P++++  ++  + M+  F + M  L     PQV+ +  +L  +++
Sbjct: 179 VIELKKDANPNVVLNLLYKHTKMQDTFGVIMLALV-NNEPQVLNIKQVLNYYIS 231


>gi|146414654|ref|XP_001483297.1| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1400

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 156/386 (40%), Gaps = 34/386 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  ++ + +   + +  + ++++    R+IP + DGFKP  R++++   +  L  
Sbjct: 716  PGTHLDPQIREIPISEFINKELILFSMADNV-RSIPSILDGFKPGQRKVLYGCFKRNLRS 774

Query: 69   GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++VG +      H HG+ S+  ++V LAQ F       L+   G FG+    
Sbjct: 775  E---IKVAQLVGYISEHTGYH-HGEGSLAQTIVGLAQNFVGANNLNLLQPIGLFGSRAAG 830

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   +A RY    +T +  +I   +D+D   +    + +  EP  +    P LL NG  G
Sbjct: 831  GKDFSAVRYIHTNITDLTRVIFNPLDDDLYTYVQD-DAQTVEPEAYLPIIPMLLVNGAEG 889

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T+IPS N  +I      +++  E                      +  E   + 
Sbjct: 890  IGTGWSTNIPSFNPVDIVANIRRMMNGEEPVDM--------------TPWFKGWEG--DL 933

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
             R+    ++V  +    +       + +TEIP +   +  +++     +    P ++D+ 
Sbjct: 934  ERISPEKYKVLGKIEQVDDDT----VEITEIPIKTWTNS-VKEFLLAGLGNDKPWIKDME 988

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGIL 361
            ++   ++R V+      +D  L M  +     + +    NM          +    + IL
Sbjct: 989  EQHGINIRFVVRLLKEEMDKSLRMGLLERFKLISSISLSNMVAFDPQGRIKKYSSANEIL 1048

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRV 387
            K++   R E+  RR     +    ++
Sbjct: 1049 KDYYWARLELYQRRKDMMAENFQNQL 1074


>gi|259089987|gb|ACV91834.1| DNA gyrase subunit A [Escherichia coli]
 gi|260667427|gb|ACX47924.1| DNA gyrase subunit A [Escherichia coli]
 gi|260667429|gb|ACX47925.1| DNA gyrase subunit A [Escherichia coli]
          Length = 98

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/98 (55%), Positives = 74/98 (75%)

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   RVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 60

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            ++A  ++  ++++ VDF D Y+  +  P V P+K PN
Sbjct: 61  AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPN 98


>gi|190409077|gb|EDV12342.1| DNA topoisomerase 2 [Saccharomyces cerevisiae RM11-1a]
          Length = 1428

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++   V      H HG+QS+  +++ LAQ F       L+   G FG    
Sbjct: 717  SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 772

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  
Sbjct: 773  GGKDAAAARYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGAE 831

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP  N  EI +    L+++ E  +E++  +  G           + E I  
Sbjct: 832  GIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIEP 881

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
                    +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 882  L------RYRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIK 931

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPL 357
            D+  E  +D    +   +            +    + +   L   V     G++ +   +
Sbjct: 932  DME-EQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 990

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            + IL E+   R E   +R     + +   VE     +     I E
Sbjct: 991  NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIE 1035


>gi|19880936|gb|AAM00578.1|AF458979_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++   V      H HG+QS+  +++ LAQ F       L+   G FG    
Sbjct: 717  SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 772

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  
Sbjct: 773  GGKDAAAARYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGAE 831

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP  N  EI +    L+++ E  +E++  +  G           + E I  
Sbjct: 832  GIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIEP 881

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
                    +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 882  L------RYRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIK 931

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPL 357
            D+  E  +D    +   +            +    + +   L   V     G++ +   +
Sbjct: 932  DME-EQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 990

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            + IL E+   R E   +R     + +   VE     +     I E
Sbjct: 991  NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIE 1035


>gi|19880901|gb|AAM00548.1|AF458974_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++   V      H HG+QS+  +++ LAQ F       L+   G FG    
Sbjct: 717  SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 772

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  
Sbjct: 773  GGKDAAAARYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGAE 831

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP  N  EI +    L+++ E  +E++  +  G           + E I  
Sbjct: 832  GIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIEP 881

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
                    +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 882  L------RYRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIK 931

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPL 357
            D+  E  +D    +   +            +    + +   L   V     G++ +   +
Sbjct: 932  DME-EQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 990

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            + IL E+   R E   +R     + +   VE     +     I E
Sbjct: 991  NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIE 1035


>gi|19880943|gb|AAM00584.1|AF458980_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++   V      H HG+QS+  +++ LAQ F       L+   G FG    
Sbjct: 717  SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 772

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  
Sbjct: 773  GGKDAAAARYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGAE 831

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP  N  EI +    L+++ E  +E++  +  G           + E I  
Sbjct: 832  GIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIEP 881

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
                    +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 882  L------RYRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIK 931

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPL 357
            D+  E  +D    +   +            +    + +   L   V     G++ +   +
Sbjct: 932  DME-EQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 990

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            + IL E+   R E   +R     + +   VE     +     I E
Sbjct: 991  NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIE 1035


>gi|6324241|ref|NP_014311.1| Top2p [Saccharomyces cerevisiae S288c]
 gi|1351262|sp|P06786|TOP2_YEAST RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|19880866|gb|AAM00518.1|AF458969_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880880|gb|AAM00530.1|AF458971_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880887|gb|AAM00536.1|AF458972_3 TOP2 [Saccharomyces cerevisiae]
 gi|887623|emb|CAA61422.1| ORF N2244 [Saccharomyces cerevisiae]
 gi|1301989|emb|CAA95964.1| TOP2 [Saccharomyces cerevisiae]
 gi|285814563|tpg|DAA10457.1| TPA: Top2p [Saccharomyces cerevisiae S288c]
          Length = 1428

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++   V      H HG+QS+  +++ LAQ F       L+   G FG    
Sbjct: 717  SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 772

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  
Sbjct: 773  GGKDAAAARYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGAE 831

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP  N  EI +    L+++ E  +E++  +  G           + E I  
Sbjct: 832  GIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIEP 881

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
                    +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 882  L------RYRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIK 931

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPL 357
            D+  E  +D    +   +            +    + +   L   V     G++ +   +
Sbjct: 932  DME-EQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 990

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            + IL E+   R E   +R     + +   VE     +     I E
Sbjct: 991  NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIE 1035


>gi|25006387|dbj|BAC24013.1| DNA topoisomerase II [Arthroderma otae]
          Length = 1087

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 159/402 (39%), Gaps = 36/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ + + ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 643  KPGTYLDHSTEQITYSDFINKELILFSMADNI-RSIPSVIDGLKPGQRKVLYTMFKRNVR 701

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 702  KD---IKVVELAGYVSGMTAYQ-HGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 757

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +T + +  EP  +    P +L NG  
Sbjct: 758  GGSDSASARYIYTRLSPFARRLFHPADEPLL-VNNTDDGKVIEPETYVPVVPLILINGAD 816

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +++      L+   E+   K   +       TG         I++
Sbjct: 817  GIGTGWSTSIPNYNPEDVVANLKRLMAGEELVPMKPW-FRGFKGEVTGSGDRYKFSGIIK 875

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
                                  G   + +TE+P +       +++ E+I A ++P   +D
Sbjct: 876  --------------------QTGDNEVEITELPIRTWTQDFKDRLEEIIKADKVPSFIKD 915

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
             +D +       +   +       L E +     +      +  V     GR+ +    +
Sbjct: 916  YKDYNTHTNVHFIIQMDEKHMKKALEEGLEEKFKLIKPIATSNMVAFDAEGRITRYETPE 975

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             IL+ + A R ++  RR    +  +  +++ L         I
Sbjct: 976  DILQAFYAVRIKLYERRKQHLLSQLQSQLDKLSNQARFVQMI 1017


>gi|259149274|emb|CAY82516.1| Top2p [Saccharomyces cerevisiae EC1118]
          Length = 1428

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++   V      H HG+QS+  +++ LAQ F       L+   G FG    
Sbjct: 717  SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 772

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  
Sbjct: 773  GGKDAAAARYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGAE 831

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP  N  EI +    L+++ E  +E++  +  G           + E I  
Sbjct: 832  GIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIEP 881

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
                    +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 882  L------RYRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIK 931

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPL 357
            D+  E  +D    +   +            +    + +   L   V     G++ +   +
Sbjct: 932  DME-EQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 990

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            + IL E+   R E   +R     + +   VE     +     I E
Sbjct: 991  NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIE 1035


>gi|19880908|gb|AAM00554.1|AF458975_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880915|gb|AAM00560.1|AF458976_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880922|gb|AAM00566.1|AF458977_3 TOP2 [Saccharomyces cerevisiae]
 gi|71064112|gb|AAZ22520.1| Top2p [Saccharomyces cerevisiae]
 gi|151944446|gb|EDN62724.1| topoisomerase II [Saccharomyces cerevisiae YJM789]
          Length = 1428

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++   V      H HG+QS+  +++ LAQ F       L+   G FG    
Sbjct: 717  SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 772

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  
Sbjct: 773  GGKDAAAARYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGAE 831

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP  N  EI +    L+++ E  +E++  +  G           + E I  
Sbjct: 832  GIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIEP 881

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
                    +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 882  L------RYRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIK 931

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPL 357
            D+  E  +D    +   +            +    + +   L   V     G++ +   +
Sbjct: 932  DME-EQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 990

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            + IL E+   R E   +R     + +   VE     +     I E
Sbjct: 991  NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIE 1035


>gi|62125793|gb|AAX63810.1| topoisomerase IV subunit A [Haemophilus quentini]
          Length = 106

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 47/106 (44%), Positives = 75/106 (70%), Gaps = 1/106 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+    +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 1   LNATEKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           S AA RYTE+R+++++E++L  +++  VD++  ++   +EP   P+
Sbjct: 61  SFAAMRYTESRLSKISEILLSELEQGTVDYQPNFDGTLAEPQYLPA 106


>gi|19880929|gb|AAM00572.1|AF458978_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++   V      H HG+QS+  +++ LAQ F       L+   G FG    
Sbjct: 717  SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 772

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  
Sbjct: 773  GGKDAAAARYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGAE 831

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP  N  EI +    L+++ E  +E++  +  G           + E I  
Sbjct: 832  GIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIEP 881

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
                    +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 882  L------RYRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIK 931

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPL 357
            D+  E  +D    +   +            +    + +   L   V     G++ +   +
Sbjct: 932  DME-EQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 990

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            + IL E+   R E   +R     + +   VE     +     I E
Sbjct: 991  NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIE 1035


>gi|19880873|gb|AAM00524.1|AF458970_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++   V      H HG+QS+  +++ LAQ F       L+   G FG    
Sbjct: 717  SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 772

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  
Sbjct: 773  GGKDAAAARYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGAE 831

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP  N  EI +    L+++ E  +E++  +  G           + E I  
Sbjct: 832  GIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIEP 881

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
                    +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 882  L------RYRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIK 931

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPL 357
            D+  E  +D    +   +            +    + +   L   V     G++ +   +
Sbjct: 932  DME-EQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 990

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            + IL E+   R E   +R     + +   VE     +     I E
Sbjct: 991  NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIE 1035


>gi|19880950|gb|AAM00590.1|AF458981_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++   V      H HG+QS+  +++ LAQ F       L+   G FG    
Sbjct: 717  SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 772

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  
Sbjct: 773  GGKDAAAARYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGAE 831

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP  N  EI +    L+++ E  +E++  +  G           + E I  
Sbjct: 832  GIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIEP 881

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
                    +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 882  L------RYRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIK 931

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPL 357
            D+  E  +D    +   +            +    + +   L   V     G++ +   +
Sbjct: 932  DME-EQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 990

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            + IL E+   R E   +R     + +   VE     +     I E
Sbjct: 991  NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIE 1035


>gi|322510575|gb|ADX05889.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
            phycodnavirus 1]
          Length = 1083

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 89/483 (18%), Positives = 191/483 (39%), Gaps = 42/483 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N + +++ N   +S+   +++  + ++     +R+IP+L DG K   R+I+++  +  L 
Sbjct: 632  NRDGVLDTNQLQISVCDFVDKEMIHFSKYD-CDRSIPNLMDGLKVSQRKILYSAFKKNLV 690

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A+  G V      H HG+ S+  ++V +AQ F       ++   G FG    
Sbjct: 691  SE---IKVAQFSGYVSEHSGYH-HGESSLNGAIVNMAQTFVGSNNINVLMPNGQFGTRLQ 746

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   ++ ++  +I +  D+  +++    +    EPV +    P +L NGT 
Sbjct: 747  GGKDSASERYIFTQLNKITRMIFKKEDDVILNY-LNDDGTPVEPVFYAPILPMILVNGTK 805

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP  N +E+ +  L  +++P      + ++I      TG            
Sbjct: 806  GIGTGFSTDIPCFNPKELIDYILKKLEDPNH----IRDFIPYYKHFTGT----------- 850

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
              +     F  + ++ ++     +  I++TE+P  V     I  + + I+  ++    D 
Sbjct: 851  IEKEDSRRFITKGKYSIQ-----NKTIIITELPIGVWNEDYITHLEKCIVDNKLKDYSDQ 905

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
              +S       +     +L  ++  E+I     + T   +N   L      +++  + + 
Sbjct: 906  STDS-------VIYFKLTLKENMDEEAILKTFKLTTTLSINNMNLFDPFD-KLVHYNEVH 957

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            +      +  L      ++  +    E +  L      I+E++    +  K         
Sbjct: 958  EICDDFIQVRLGYYEKRKLYLVKMLSEEMNILSNKCKYINELLNDTLDLRK--KSNSQMV 1015

Query: 422  SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             L + +    LN     L K+    +  E  + L E+ K    L     + + +    +E
Sbjct: 1016 ELLQQKKYDTLNDSYHYLIKMPMDSVCKENVDTLNEQFKKKKDLLDELNKTSNVDLWKKE 1075

Query: 482  VKE 484
            + E
Sbjct: 1076 LSE 1078


>gi|19880894|gb|AAM00542.1|AF458973_3 TOP2 [Saccharomyces cerevisiae]
 gi|256270263|gb|EEU05481.1| Top2p [Saccharomyces cerevisiae JAY291]
          Length = 1428

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++   V      H HG+QS+  +++ LAQ F       L+   G FG    
Sbjct: 717  SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 772

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  
Sbjct: 773  GGKDAAAARYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGAE 831

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP  N  EI +    L+++ E  +E++  +  G           + E I  
Sbjct: 832  GIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIEP 881

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
                    +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 882  L------RYRMYGRIE----QIGDNILEITELPARTWTSTIKEYLLLGLSGNDKIKPWIK 931

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPL 357
            D+  E  +D    +   +            +    + +   L   V     G++ +   +
Sbjct: 932  DME-EQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 990

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            + IL E+   R E   +R     + +   VE     +     I E
Sbjct: 991  NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIE 1035


>gi|313192248|emb|CBY05932.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 96


>gi|135994|sp|P27570|TOP2_CRIFA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|11001|emb|CAA42182.1| kinetoplast-associated type II DNA topoisomerase (toptIImt)
            [Crithidia fasciculata]
          Length = 1239

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 93/568 (16%), Positives = 193/568 (33%), Gaps = 47/568 (8%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MSKANAFQGEVDIDRSKKLLTIGDFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQG 116
            M +      +   K A++ G +      H HG+ S+ +++V++AQ F       L+  +G
Sbjct: 703  MLK---RHSSEAAKVAQLSGYISEVSSFH-HGEASLQETIVKMAQNFTGGNNINLLVPEG 758

Query: 117  NFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
             FG+    G+  AA RY   ++++ A L+    D+  +D+ D       EP  +    P 
Sbjct: 759  QFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEDDDPLLDYID-EEGTMVEPNHYVPILPL 817

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--EISIEKLLEYIIGPDFPTGGII 232
            LL NG  GI  G AT+IPS +  ++  A  A+I+    +  +  L+ + +G      G +
Sbjct: 818  LLCNGAVGIGFGFATNIPSFHPLDVSAAVRAMINGESAKQVVRNLVPWAVGF----QGTV 873

Query: 233  VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
                E   E   +G+       R  V E            +P+          I+ L  +
Sbjct: 874  RRGPE--KEYIAVGKYTAHRNGRLHVSE------------LPWMTSIEAFRSHISSLASS 919

Query: 293  KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV- 351
              +  + D           +                      +  R  +N  V S     
Sbjct: 920  DVVQRIADY-----SGANHIDIDLIVREGSMTTWAECETDLALSQRIYINGTVFSPDGTL 974

Query: 352  -PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             P    L  +L+     R ++  RR + ++  ++  +  L+       +  +        
Sbjct: 975  SPIDADLSPVLQWHYDRRLDLYKRRRTRQIGLLEMDLARLQSTRKFVEHFRQGHIDFLAA 1034

Query: 411  DKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                  K  +       ++  D IL   +    K    ++++++         +      
Sbjct: 1035 TDDTLTKTCVKLGLVRVDDGYDYILKKPITFYTKTSTEKLQADIKKTQDSIAVLKQTT-- 1092

Query: 468  GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                      ++ +  + F +   +        +   +     +   + + P+ +    +
Sbjct: 1093 ---PVKMWLTDLDKFDKTFQEYERVLIHSIQKEQRPASITGGEEVPALRQPPLMLEAPAK 1149

Query: 528  GWIRSLKSHSVDLSALHFKEGDSLKIAL 555
            G   S     +             +   
Sbjct: 1150 GAASSSYRVHICRYEEPPASKRKPEDTY 1177


>gi|38453797|dbj|BAD02199.1| DNA topoisomerase II [Arthroderma racemosum]
          Length = 1089

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 156/404 (38%), Gaps = 39/404 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  + 
Sbjct: 640  KPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRNVR 698

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 699  KD---IKVVELAGYVSGMTAYQ-HGDNSLHATIVGLAQTFVGSNNINCLEPSGNFGSRLQ 754

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT-YNEEDSEPVVFPSKFPNLLANGT 180
             G  +A+ RY   R++  A  +    DE  +   +   + +  EP  +    P +L NG 
Sbjct: 755  GGSDSASARYIYTRLSPFARRLFHQADEPLL--VNNIDDGKVIEPETYVPVVPLVLINGA 812

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +TSIP++N +E+ +    L+   E+   K   +       TG         I+
Sbjct: 813  DGIGTGWSTSIPNYNPEEVVDNLKRLMAGDELVPMKPW-FRGFKGEVTGSGDRYKFSGII 871

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +                      G   + +TE+P +       +K+ ++I A+++P    
Sbjct: 872  K--------------------QTGDNEVEITELPIRTWTQDFKDKLEDIIKAEKVPSFIK 911

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG----RVPQVMP 356
               +      +    ++   +         +    +   P+  + +       R+ +   
Sbjct: 912  DYRDYNTHTNVHFIIQSGVKNTVKKAVEDGLEERFKLVKPIATSNMVAFDAEGRITRYET 971

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             + IL+ + A R ++  +R    +  +  ++E L         I
Sbjct: 972  PEDILRAFYAVRIKLYEKRKQHLLSQLQSQLEKLTNQARFVQMI 1015


>gi|115390190|ref|XP_001212600.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
 gi|114194996|gb|EAU36696.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
          Length = 1732

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 163/401 (40%), Gaps = 35/401 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ +V  ++    + +  + ++++    R+IP + DG KP  R++++      L  
Sbjct: 776  PGTFLDHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFRRNLKK 834

Query: 69   GAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K   + G V G      HG+ S+  ++V LAQ F        +   GNFG+    
Sbjct: 835  D---MKVVELAGHVSGTTAYQ-HGEGSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQG 890

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   A+ RY   R++  A  +    D+  + + +  +    EP V+    P +L NG  G
Sbjct: 891  GADCASARYIYTRLSPFARRVFHNHDDPLLTYNED-DGAKIEPEVYVPVVPMILINGADG 949

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G ++SIP++N ++I E    ++D     ++ +  +  G    TG +    ++     
Sbjct: 950  IGTGWSSSIPNYNPEDIVENLKRMMDG--EPLKPMQPWFRG---FTGEVTAVGQD----- 999

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-EDI 301
                      R ++       G   + +TE+P +       +K+ ++I A++ P   +D 
Sbjct: 1000 ----------RFKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDY 1049

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDG 359
            +D +       +   +       + E +     +         V     GR+ +   ++ 
Sbjct: 1050 KDYNTHTKVHFVIQMDEKHMKTAIAEGLEEKFKLSKTMTTTNLVAFDPEGRITKYASVED 1109

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            I+KE+ A R +   RR  +++  + + ++ L         I
Sbjct: 1110 IMKEFYAVRLKYYERRKQYQLNEMQKELDKLSNQARFVQMI 1150


>gi|321398489|emb|CAM69466.2| DNA topoisomerase ii [Leishmania infantum JPCM5]
          Length = 1252

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 84/406 (20%), Positives = 156/406 (38%), Gaps = 35/406 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N N  ++ NV+ VS R  +++  + ++++   ER+IP + DGFKP  R+I+ +  +  L 
Sbjct: 647  NVNESMDYNVRQVSYRDFVDKELILFSIAD-CERSIPSVIDGFKPGQRKILFSCFKRNLV 705

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K  ++ G V      H HG+QS+  ++V +AQ F      PL+   G FG    
Sbjct: 706  NS---IKVVQLAGYVSEHSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLH 761

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   AA RY   R+ QV+  I    D+  V+++D  +    EP  +    P +L NGT+
Sbjct: 762  GGKDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNGTT 820

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N  EI      L+   E+   +                       +E
Sbjct: 821  GIGTGFSTSIPNYNPLEIISNLERLMRGEEVHKMQP--------------WYFGFTGTME 866

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                G+  F    R+ +   G     + +TE+P  V      +    L   +   L+   
Sbjct: 867  EKEPGK--FVSHGRYEIRPDGV----VCITELPIGVWTQAYKK---FLEDMREKELVVQY 917

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            R+ + +         +  +    + + +         +    N+++  +  Q+       
Sbjct: 918  REHTTDVTVDFEVFLHPQVLEQWVSQDVVEERLQLKEYVHATNIIAFNKEGQITKYSDAE 977

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
                      L   +  +   +     +   L      + E++   
Sbjct: 978  SVLKEFYLVRLDYYAKRKQYLLGELRRLTSKLENMVRFVREVVEGT 1023


>gi|146092354|ref|XP_001470271.1| DNA topoisomerase ii [Leishmania infantum]
          Length = 1253

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 84/406 (20%), Positives = 156/406 (38%), Gaps = 35/406 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N N  ++ NV+ VS R  +++  + ++++   ER+IP + DGFKP  R+I+ +  +  L 
Sbjct: 647  NVNESMDYNVRQVSYRDFVDKELILFSIAD-CERSIPSVIDGFKPGQRKILFSCFKRNLV 705

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K  ++ G V      H HG+QS+  ++V +AQ F      PL+   G FG    
Sbjct: 706  NS---IKVVQLAGYVSEHSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLH 761

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   AA RY   R+ QV+  I    D+  V+++D  +    EP  +    P +L NGT+
Sbjct: 762  GGKDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNGTT 820

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N  EI      L+   E+   +                       +E
Sbjct: 821  GIGTGFSTSIPNYNPLEIISNLERLMRGEEVHKMQP--------------WYFGFTGTME 866

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                G+  F    R+ +   G     + +TE+P  V      +    L   +   L+   
Sbjct: 867  EKEPGK--FVSHGRYEIRPDGV----VCITELPIGVWTQAYKK---FLEDMREKELVVQY 917

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            R+ + +         +  +    + + +         +    N+++  +  Q+       
Sbjct: 918  REHTTDVTVDFEVFLHPQVLEQWVSQDVVEERLQLKEYVHATNIIAFNKEGQITKYSDAE 977

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
                      L   +  +   +     +   L      + E++   
Sbjct: 978  SVLKEFYLVRLDYYAKRKQYLLGELRRLTSKLENMVRFVREVVEGT 1023


>gi|308810347|ref|XP_003082482.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
 gi|116060951|emb|CAL56339.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
          Length = 1099

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 122/325 (37%), Gaps = 38/325 (11%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++ + +A+     + +  + ++ + +  R+IP + DGFKP  R+++ +  +  L 
Sbjct: 688 EPGTFLDMSGEAIRYDEFINKELILFSRADLL-RSIPSMVDGFKPSQRKVLFSCFKRKLK 746

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                 K A++ G V      H HG+ S+  ++V LAQ F       L+   G FG    
Sbjct: 747 SD---IKVAQLSGYVSEHSAYH-HGEASLAMTIVNLAQDFVGSNNINLLVPSGQFGTRLQ 802

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLAN 178
            G   A+ RY   R+ ++   I    D    D    Y   + +  EP  +    P +L N
Sbjct: 803 GGKDHASPRYIFTRLHEICRAIFPECD----DALLNYLDEDGQRIEPDFYYPVLPLVLVN 858

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GI  G +TSIP+ N ++I      +++  E                          S
Sbjct: 859 GAEGIGTGWSTSIPNFNPRDIISNIKLVLEGEEARQM-------------HPWYRNFNGS 905

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP---YQVQKSRLIEKIAELIIAKRI 295
           IVE    G   + V   + + +       + +TE+P   +       +E +         
Sbjct: 906 IVEEIVKGDSRYTVTGSYIIRDE----CTLEITELPLRSWTTDYKDFLEDMLAPKTKNEK 961

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSL 320
           P + D ++   +     +       
Sbjct: 962 PFITDYKEYHTDTTVHFVITMPPEN 986


>gi|170047758|ref|XP_001851377.1| DNA topoisomerase 2 [Culex quinquefasciatus]
 gi|167870064|gb|EDS33447.1| DNA topoisomerase 2 [Culex quinquefasciatus]
          Length = 1358

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/469 (15%), Positives = 166/469 (35%), Gaps = 33/469 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            +S +  +    + ++ S    R+IP + DG KP  R+++    +          K A++ 
Sbjct: 710  ISYKEFINLELVLFSNSDNV-RSIPCVLDGLKPGQRKVMFTCFKRN---DKREVKVAQLA 765

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+QS+  ++V LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 766  GSVAEMSAYH-HGEQSLCSTIVNLAQNFVGSNNINLLYPGGQFGTRLAGGKDSASPRYIF 824

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              M+ +  LI   +D+  ++++   + +  EP+ +    P +L NG+ GI  G +T IP 
Sbjct: 825  TMMSALTRLIFHPLDDPLLEYQYD-DNQKIEPLWYLPIIPMVLVNGSEGIGTGWSTKIPL 883

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            HN ++I      +++  E  +           +              +   +G       
Sbjct: 884  HNPRDIIANLRRMLNGEEPKVLHP--------WYKNFRGSVEVVGPQKYLTVGNLSLLEN 935

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
             +  + E+  G+W         QV K   +E +      ++  + +     +   VR V+
Sbjct: 936  QKIEISELPIGTW--------TQVYKENTLEPLLHGSEKQKAVISDYKEYNTDTTVRFVV 987

Query: 314  FPKNRSLDPDLLME-SIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRRE 370
                   D     +     +  + +               + +    + I +E+   R +
Sbjct: 988  SFLPGEFDKLYAEDGGFHRVFKLTSSISTTCMHAFDDKNYLRRYEHANDIFQEYYKIRLD 1047

Query: 371  VLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
               +R ++    +    + L  +   I       ++   +        ++ R    +   
Sbjct: 1048 FYHKRKAYLEGMLQAEADRLTDQARFIMEKCDRTLVVENKKRKVMIDELIKRGYRPDPVK 1107

Query: 429  DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            +    + L    + EE + +   +      +         ++ + ++  
Sbjct: 1108 EWKRKVALEEDEEAEEPEEEGAEEEDTKPGKSAAKKPVDPEKAFQRLTD 1156


>gi|303322098|ref|XP_003071042.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
            SOWgp]
 gi|240110741|gb|EER28897.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
            SOWgp]
          Length = 1717

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 80/408 (19%), Positives = 150/408 (36%), Gaps = 44/408 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V  ++    + +  + ++++    R+IP + DG KP  R++++AM +  + 
Sbjct: 778  KPGTYLDHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYAMFKRNVK 836

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HG+ S+  ++V LAQ F        +   GNFG+   
Sbjct: 837  KD---MKVVELGGYVSGMTAYQ-HGEASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 892

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT-YNEEDSEPVVFPSKFPNLLANGT 180
             G   A+ RY   R++  A  I    DE  +  +    + +  EP V+    P +L NG 
Sbjct: 893  GGSDCASARYIHTRLSPFARRIFHAADEPLL--KSNIDDGKVIEPEVYVPVVPMILINGA 950

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +TSIP+ N +++      L+D   +   K   +       T          I+
Sbjct: 951  DGIGTGWSTSIPNFNPEDVVANLRRLMDGESLVPMKPW-FRGFTGEVTASGDRYKFSGII 1009

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---- 296
            +                      G   + +TE+P +       +K+ E+I A++ P    
Sbjct: 1010 K--------------------QTGDCEVEITELPIRTWTQDFKDKLEEIIKAEKAPSFIK 1049

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
              +D    S     I +  K+     +  +E  F LS       +    +        + 
Sbjct: 1050 DYKDYNTHSKVHFIIQMDEKHMKKALEDGLEERFKLSKT-----IATTNMVAFDAEGRIT 1104

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
                 ++ L     V  R    R Q +  ++              ++I
Sbjct: 1105 KYDTAEDILKAFYAVRIRFYEKRKQHLLAQLHKELDKFTNQARFVQMI 1152


>gi|209163861|gb|ACI40638.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163865|gb|ACI40640.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163871|gb|ACI40643.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163897|gb|ACI40656.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163899|gb|ACI40657.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163943|gb|ACI40679.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163945|gb|ACI40680.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163947|gb|ACI40681.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163955|gb|ACI40685.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163971|gb|ACI40693.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163973|gb|ACI40694.1| DNA gyrase subunit A [Clostridium septicum]
          Length = 231

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 91/234 (38%), Positives = 148/234 (63%), Gaps = 3/234 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ +++D V+F   ++ E+ EP V PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIAAEMLRDINKDTVNFIPNFDGEEKEPEVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  + LIDNPE +I +L+  I GPDFPTG   +  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIMLIDNPESTILELMTVIKGPDFPTGA-TIMGKSGIRAAYETGKGRVIV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE       I+VTEIPYQV K++LIE IA+L+  K+I  + D+RDES  +   +
Sbjct: 120 RAKSEIEEEN-NRHRIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDREGMRI 178

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    +  +P++++  ++  + M+  F + M  L     PQV+ +  +L  +++
Sbjct: 179 VIELKKDANPNVVLNLLYKHTKMQDTFGVIMLALV-NNEPQVLNIKQVLNYYIS 231


>gi|320032749|gb|EFW14700.1| DNA topoisomerase 2 [Coccidioides posadasii str. Silveira]
          Length = 1717

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 80/408 (19%), Positives = 150/408 (36%), Gaps = 44/408 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V  ++    + +  + ++++    R+IP + DG KP  R++++AM +  + 
Sbjct: 778  KPGTYLDHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYAMFKRNVK 836

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HG+ S+  ++V LAQ F        +   GNFG+   
Sbjct: 837  KD---MKVVELGGYVSGMTAYQ-HGEASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 892

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT-YNEEDSEPVVFPSKFPNLLANGT 180
             G   A+ RY   R++  A  I    DE  +  +    + +  EP V+    P +L NG 
Sbjct: 893  GGSDCASARYIHTRLSPFARRIFHAADEPLL--KSNIDDGKVIEPEVYVPVVPMILINGA 950

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +TSIP+ N +++      L+D   +   K   +       T          I+
Sbjct: 951  DGIGTGWSTSIPNFNPEDVVANLRRLMDGESLVPMKPW-FRGFTGEVTASGDRYKFSGII 1009

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---- 296
            +                      G   + +TE+P +       +K+ E+I A++ P    
Sbjct: 1010 K--------------------QTGDCEVEITELPIRTWTQDFKDKLEEIIKAEKAPSFIK 1049

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
              +D    S     I +  K+     +  +E  F LS       +    +        + 
Sbjct: 1050 DYKDYNTHSKVHFIIQMDEKHMKKALEDGLEERFKLSKT-----IATTNMVAFDAEGRIT 1104

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
                 ++ L     V  R    R Q +  ++              ++I
Sbjct: 1105 KYDTAEDILKAFYAVRIRFYEKRKQHLLAQLHKELDKFTNQARFVQMI 1152


>gi|322824253|gb|EFZ29714.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1461

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 91/398 (22%), Positives = 154/398 (38%), Gaps = 36/398 (9%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ V     +++  + ++++   ER+IP + DG KP  R+II +  +  L
Sbjct: 650  TNVNESMNYNVRTVRYSEFVDKELILFSVAD-CERSIPSVIDGLKPGQRKIIFSSFKRRL 708

Query: 67   DFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                   K  ++ G V      H HG+QS+  ++V LAQ F      PL+   G FG   
Sbjct: 709  T---RSIKVVQLAGYVSEHAAYH-HGEQSLVQTIVGLAQNFVGSNNVPLLQQDGQFGTRL 764

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G   AA RY   R+T +A  I    DE  VD++D  +    EP  +    P +L NGT
Sbjct: 765  QGGKDHAAGRYIFTRLTNIARYIYHPSDEFVVDYKDD-DGLSVEPFYYVPVIPMVLVNGT 823

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            SGI  G AT+IP+++  E+ +  + L+   E+   K                       +
Sbjct: 824  SGIGTGFATNIPNYSPLEVIDNLMRLLRGEEVQPMKP--------------WYFGFTGTI 869

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            E    G+  F       V   G     + +TE+P         + + EL   + +    +
Sbjct: 870  EEKERGK--FVSTGCANVRPDGV----VQITELPIGTWTQGYKKFLEELREKEVVVQYRE 923

Query: 301  IRDESAEDVRIV-LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLD 358
               +   D  +               +E    L   E     N+          +    +
Sbjct: 924  HNTDVTVDFEVFLHPEVLHHWVAQGCVEERLQL--REYIHATNIIAFDREGQITKYRDAE 981

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
             +LKE+   R E   +R  F +  +      L+ ++  
Sbjct: 982  AVLKEFYLVRLEYYAKRRDFLIGDLRSVASKLENMVRF 1019


>gi|10241569|emb|CAC09566.1| DNA gyrase subunit A [Bacteroides uniformis]
          Length = 93

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/93 (54%), Positives = 69/93 (74%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            ++  Y+ Y++S I  RA+PD+++GFKPVHRRI+  M  +G      +KKSAR+VGEV+G
Sbjct: 1   EMKSSYIDYSMSVIVSRALPDVKNGFKPVHRRILFGMMGLGNTSDKPYKKSARVVGEVLG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           K HPHGD SVY +LVR+AQP+  RY L+ GQGN
Sbjct: 61  KYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGN 93


>gi|71417991|ref|XP_810722.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70875297|gb|EAN88871.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1484

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 90/398 (22%), Positives = 154/398 (38%), Gaps = 36/398 (9%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ V     +++  + ++++   ER+IP + DG KP  R+II +  +  L
Sbjct: 650  TNVNESMNYNVRTVRYSEFVDKELILFSVAD-CERSIPSVIDGLKPGQRKIIFSSFKRRL 708

Query: 67   DFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                   K  ++ G V      H HG+QS+  ++V LAQ F      PL+   G FG   
Sbjct: 709  T---RSIKVVQLAGYVSEHAAYH-HGEQSLVQTIVGLAQNFVGSNNVPLLQQDGQFGTRL 764

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G   AA RY   R+T +A  I    D+  VD++D  +    EP  +    P +L NGT
Sbjct: 765  QGGKDHAAGRYIFTRLTNIARYIYHPSDDFVVDYKDD-DGLSVEPFYYVPVIPMVLVNGT 823

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            SGI  G AT+IP+++  E+ +  + L+   E+   K                       +
Sbjct: 824  SGIGTGFATNIPNYSPLEVIDNLMRLLRGEEVQPMKP--------------WYFGFAGTI 869

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            E    G+  F       V   G     + +TE+P         + + EL   + +    +
Sbjct: 870  EEKEKGK--FVSTGCANVRPDGV----VQITELPIGTWTQGYKKFLEELREKEVVVQYRE 923

Query: 301  IRDESAEDVRIV-LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLD 358
               +   D  +               +E    L   E     N+          +    +
Sbjct: 924  HNTDVTVDFEVFLHPEVLHHWVAQGCVEERLQL--REYIHATNIIAFDREGQITKYRDAE 981

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
             +LKE+   R E   +R  F +  +      L+ ++  
Sbjct: 982  AVLKEFYLVRLEYYAKRRDFLIGDLRSVASKLENMVRF 1019


>gi|316974528|gb|EFV58014.1| DNA topoisomerase 2-alpha [Trichinella spiralis]
          Length = 1357

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 91/527 (17%), Positives = 189/527 (35%), Gaps = 47/527 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYA-LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +E+ K +S +  +++  + ++ +    ER+IP + DG KP  R+++    +       
Sbjct: 706  LYQEDTKEISYKSFIDKELILFSNMD--NERSIPSMVDGLKPGQRKVLFTCFKRN---DK 760

Query: 71   AFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
               K A++ G V      H HG+ S+  +++ LA  F       ++   G FG     G 
Sbjct: 761  REVKVAQLAGSVAEHSAYH-HGEVSLMSTIINLAHNFVGSNNINILLPIGQFGTRLLGGR 819

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY    ++ V   +    DE  ++F    + +  EP  +    P +L NG  GI 
Sbjct: 820  DAASARYIFTMLSPVTRAMFCTDDEPNLNFLF-EDNQKIEPFWYCPILPLVLVNGCEGIG 878

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T +P+H+ + + +    L+++ E+              P        +  I     
Sbjct: 879  TGWSTKVPNHDPRIVVKNLKRLMNDEEL-------------LPMYPWYKNFQGEISTLNA 925

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---LIIAKRIPLLEDI 301
                    R     E        + +TE+P         E + E        + P+++D 
Sbjct: 926  S-------RFVCFGEIASVDDTTLEITELPIGTWTQNYKESVLEPMLYGADGKQPVIQDF 978

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDG 359
            ++   +     +   ++    +     I     ++T    +  VL    G + +      
Sbjct: 979  KEYHTDTTVRFIIRMSKEKMAEANAHGIHKYFKLQTIINSSSMVLFDEHGCLKKFETAKD 1038

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVM 417
            IL  +   R ++  +R ++    ++ +   L  +   I       I      +      +
Sbjct: 1039 ILISFYKVRLDMYVKRKAYLEGHLEAQANRLKAQARFIMEKIEGVIKIENMKKKHIVEQL 1098

Query: 418  VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK--EKIDSLLNSGKQQWNQI 475
            V R    +          +R L+ +EE+  +++  N + E    + D  L+      +  
Sbjct: 1099 VERGYPADPVKKWKEAENMRKLKAMEEFVDETDEANEVEETGANEEDVCLSDYDYLLSMA 1158

Query: 476  ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
               + E +    K   L  R     E++     T +   IE     +
Sbjct: 1159 LIRLSEEE----KDKLLKDRDVKIDELNSLKAKTPKMLWIEDLDKFL 1201


>gi|154334646|ref|XP_001563570.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060591|emb|CAM42140.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1239

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 94/508 (18%), Positives = 186/508 (36%), Gaps = 51/508 (10%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K++++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEIDIDRSKKSLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQG 116
            M        +   K A++ G +      H HG+ S+ +++V++AQ F       L+  +G
Sbjct: 703  MLR---RHSSEASKVAQLSGYISEASAFH-HGEVSLQETIVKMAQNFTGGNNINLLVPEG 758

Query: 117  NFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
             FG+    G+  AA RY   ++++ A L+    D+  +D+ D       EP  +    P 
Sbjct: 759  QFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMD-EEGTPVEPHHYVPILPM 817

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--EISIEKLLEYIIGPDFPTGGII 232
            LL NG  GI  G AT+IP  +  ++  A  A+I+    +  +  L+ + +G      G +
Sbjct: 818  LLCNGAVGIGFGFATTIPPFHPLDVSAAVRAMINGESAKQVVRNLVPWAVGF----QGTV 873

Query: 233  VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
                +   E   +G+       R+ + E            IP+          I+ L   
Sbjct: 874  RRGPDD--EFIAVGKYTAHPNGRFHISE------------IPWMTSIEAFRLHISSLANT 919

Query: 293  KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV- 351
              +  + D           +                      +  R  +N  V S     
Sbjct: 920  DVVQRIADY-----SGANHIDIDLIVRDGALTTWAECEADLALAQRVHINGTVFSPTGTL 974

Query: 352  -PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             P    L  +L+     R ++  RR + ++  ++  +  LK       +  +      N 
Sbjct: 975  SPIDSNLAPVLQWHYDRRLDLYKRRRTRKIGLMEMDLARLKSTRKFVEHFRQGQIDFLNA 1034

Query: 411  DKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                  K  +       +   D IL   +    +    +++ ++    A+ E++      
Sbjct: 1035 TDDTLTKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQEDIAKTQAQIEEL------ 1088

Query: 468  GKQQWNQIACEIREVKEIFSKSTDLGRR 495
              ++   +   + E+ + F K+     R
Sbjct: 1089 --KRTTPVRMWLTEL-DKFDKTFQEYER 1113


>gi|60651670|gb|AAX32846.1| GyrA [Riemerella anatipestifer]
          Length = 105

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/104 (47%), Positives = 75/104 (72%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           + M  +G+     +  SAR VG+V+GK HPHGD+SVYD +VR+AQP+  RYP + GQGNF
Sbjct: 1   YGMYRLGVFSNKKYLTSARNVGDVLGKYHPHGDRSVYDHMVRMAQPWSLRYPQVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           G++DGD  AA RYTEAR+ ++++ IL  +D++  DF++ +++  
Sbjct: 61  GSMDGDPPAAMRYTEARLKKISDEILSDLDKETADFQNNFDDSL 104


>gi|19549339|gb|AAL89786.2|AF487421_1 DNA gyrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 94

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA
Sbjct: 2   EQAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAA 61

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
            RYTE R+ ++A  ++  ++++ VDF DTY+ 
Sbjct: 62  MRYTEIRLAKIAHELMADLEKETVDFVDTYDG 93


>gi|313192258|emb|CBY05937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 77/98 (78%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+VIG+ HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGEYHPHGDPAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           GDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDKYDG 99


>gi|19908359|gb|AAL99230.1| gyrase [Salmonella enterica subsp. enterica serovar Enteritidis]
          Length = 92

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 73/91 (80%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           AA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEKETVDFVDN 91


>gi|221060064|ref|XP_002260677.1| DNA topoisomerase II [Plasmodium knowlesi strain H]
 gi|193810751|emb|CAQ42649.1| DNA topoisomerase II, putative [Plasmodium knowlesi strain H]
          Length = 1506

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/397 (17%), Positives = 145/397 (36%), Gaps = 34/397 (8%)

Query: 10   NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L   
Sbjct: 707  GSYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLKNE 765

Query: 70   AAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                K A++VG +      H HG+ S+  +++ +AQ F        +   G FG+    G
Sbjct: 766  ---CKVAQLVGYIAEHSAYH-HGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGG 821

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A+A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI
Sbjct: 822  KDASAARYIFTKLASCTRSIFNEYDDPILKY-LNEEGQKIEPKYYIPVIPTILVNGCEGI 880

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++ IP++N ++I E     I+                  P   +I   ++      
Sbjct: 881  GTGYSSFIPNYNYKDIIENIKRYINKE----------------PLIPMIPWYKDFKGRIE 924

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              G+ GF                 + + E+P +       E + EL+  ++  L+ D  D
Sbjct: 925  SNGKTGFETIGIIR----KIDDETLEINELPIKKWTQDYKEFLEELLTDEKNQLILDYID 980

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
             S+ +        + +       E +  +  +++        L    + ++      L  
Sbjct: 981  NSSHEEICFTIKMDPAKLRKAEEEGLEKVFKLKSTLTTTNMTLFDYNL-KLQKYATELDI 1039

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
                  + L      R   +  ++E  K ++      
Sbjct: 1040 LKEFCFQRL-NAYENRKSYLIAKLEKEKKIISNKSKF 1075


>gi|121700316|ref|XP_001268423.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
 gi|119396565|gb|EAW06997.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
          Length = 1735

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 159/402 (39%), Gaps = 35/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V  ++    + +  + ++++  + R+IP + DG KP  R++++      L 
Sbjct: 771  KPGTFLDHSVAKITYTDFINKELILFSMADNQ-RSIPSVIDGLKPGQRKVLYVSFRRNLK 829

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 830  KD---MKVVELAGHVSGMTAYQ-HGDASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 885

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    DE  + +    + +  EP  +    P LL NG  
Sbjct: 886  GGQDCASARYIYTRLSPFARRMFHPADEPLLTYNVD-DGKQIEPENYVPVVPLLLINGAD 944

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I +    L+D     I+ +  +  G     G +     +    
Sbjct: 945  GIGTGWSSSIPNYNPEDIVDNLKRLMDG--EPIKPMQPWFRG---FNGEVTAIGGD---- 995

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
                       R ++       G   + +TE+P +       +K+ E+I A + P   +D
Sbjct: 996  -----------RFKFSGIIKEAGDKEVEITELPIRTWTQDFKDKLEEIIKADKTPSFIKD 1044

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
             +D +       +   +       L E +     +         V     GR+ +   +D
Sbjct: 1045 YKDYNTHTKVRFVIQMDEKHMQSALSEGLEEKFKLSKTIATTNLVAFDPEGRITKYASVD 1104

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             ILKE+   R +   RR  +++  + R ++ L         I
Sbjct: 1105 DILKEFFTVRLKFYERRKQYQLSELQRELDKLSNQARFVQMI 1146


>gi|310722590|ref|YP_003969413.1| topoisomerase II medium subunit [Aeromonas phage phiAS5]
 gi|306021433|gb|ADM79967.1| topoisomerase II medium subunit [Aeromonas phage phiAS5]
          Length = 438

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 188/471 (39%), Gaps = 40/471 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    +   +      +A+ TI+ERA+P + DG KPV R I++++ +   + G +FKK+
Sbjct: 2   QVTKRGISSLVNNEAKEFAMYTIEERALPSMVDGLKPVQRYILYSVLK---NAGKSFKKN 58

Query: 76  ARIVGEVIGKL-HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           A I G VI +  + HG+ +  D+   +A  +   +P+I GQGNFG+      AA RY   
Sbjct: 59  AAIAG-VISEYGYNHGEVAAMDAACLMASTWNNNFPIIQGQGNFGSRAVQEGAAARYIFC 117

Query: 135 RMTQVAELILQG---VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
                 + + +    ++E         +  +      P   P +L NG SGIA G AT I
Sbjct: 118 TKHDQFDSMFKDMELLEESTA------DGSELPRYYLP-ILPTVLLNGVSGIATGFATKI 170

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             H++  + +    ++   +    +    I  P F      V  +             + 
Sbjct: 171 LPHSLVSVAKCVEQVLKTGKCDEPQ----IQFPLFYGKITPVVDKN----------QAWT 216

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +   + +     G   + ++EIP +  + + +  + +L+   +I       DES  D R 
Sbjct: 217 LEGCYELS----GKTKLTISEIPVKYDRVKYVTLLDKLVETDKIVGY----DESKMDDRE 268

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM-PLDGILKEWLAHRRE 370
             F      D D   E+I     +       + V+      +       ++ +++ +R  
Sbjct: 269 FCFKITLKRDFDTSHENIIKTFKLAQNVSQYIRVIDQNGDLKPYEKASDLIVDFVNYRFG 328

Query: 371 VLFRRSSFRMQAIDRRV-EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           +L +R    + A   ++      +    L +DE I   +   K     +  F   ++  +
Sbjct: 329 ILQKRIDNAIVATTEKLGYAQAKVEFIKLVLDEKIKFHKQTRKQVIEQIQAFDSLKDYAE 388

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
            ++ + L  + + E  +++ ++  L  E +   +     + Q + I   ++
Sbjct: 389 QLVQMNLYHMTEDELTKLEKQVTELTKENDFWKNTSPKKQYQ-SDIKEFLK 438


>gi|332027283|gb|EGI67367.1| DNA topoisomerase 2 [Acromyrmex echinatior]
          Length = 1552

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 94/557 (16%), Positives = 180/557 (32%), Gaps = 41/557 (7%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E+  + VS    +    + Y+      R+IP++ DGFKP  R+++    +        
Sbjct: 724  LYEKETRDVSFSDFVNVELVLYSNYDNV-RSIPNMMDGFKPGQRKVLFTCLKRN---DKR 779

Query: 72   FKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V      H HG+ S+  ++V LAQ F       L+   G FG     G  
Sbjct: 780  EVKVAQLAGSVAEHSAYH-HGETSLMATIVNLAQNFVGSNNINLLQPIGQFGTRLAGGKD 838

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            +A+ RY    ++ +A  I    D+  + +    + +  EPV +    P +L NG  GI  
Sbjct: 839  SASPRYIFTMLSPLARYIFHKHDDPLLKYEYD-DNQRIEPVYYVPVIPMVLVNGADGIGT 897

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
            G  T IP++N +EI E               L   + G D        ++ + +VES   
Sbjct: 898  GWMTKIPNYNPREIIE--------------NLQRMMEGADPKPMIPYYKNFKGVVESCGD 943

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---LIIAKRIPLLEDIR 302
             R  + +     V     G   + +TE+P         E + E       K   ++ D +
Sbjct: 944  FR--YVISGEISVI----GPDKVEITELPIGTWTQAYKETVLEPMLHGTEKTPAIITDYK 997

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            + + +     +   NR    +L  + +     ++T   +           Q +     + 
Sbjct: 998  EYNTDTAVHFIVMMNRDKLVELERDGLHKTFKLQTTMTITSMCAFDEN--QCLNKYESVV 1055

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            + L    +V       R   ++  ++          N    I    +          +  
Sbjct: 1056 QILKGFYKVRMDTYHKRKDYLEGILQAEAAK---LSNQARFILEKCDSTLVIENKKKKDM 1112

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + E       +  + S +  +  +   E      E+    +     +     +   +  +
Sbjct: 1113 IAELVRRNYESDPVVSWKLSQNREQVLEEAVENDEESTPTTSTMEKENFDYLLGMTMWSL 1172

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
                 K   L +R     E+ R    T      E     +   N+   +  K        
Sbjct: 1173 TRE-KKEDLLRQRDEKIAELKRLQARTPIDLWKEDLDNLLTELNKVEDKEQKEQMKTKQT 1231

Query: 543  LHFKEGDSLKIALHAHT 559
            +                
Sbjct: 1232 VKKPPSRFYSKMEDTRR 1248


>gi|197209604|gb|ACH48044.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 93

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/93 (53%), Positives = 71/93 (76%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK+AR+VG+V GK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA  
Sbjct: 1   PYKKAARVVGDVTGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMP 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
           YTE R+ ++A  ++  ++++ VDF D Y+  + 
Sbjct: 61  YTEIRLAKIAHGLMADLEKETVDFVDNYDGTEK 93


>gi|157866980|ref|XP_001682045.1| mitochondrial DNA topoisomerase II [Leishmania major]
 gi|68125496|emb|CAJ03357.1| mitochondrial DNA topoisomerase II [Leishmania major strain Friedlin]
          Length = 1236

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/508 (18%), Positives = 188/508 (37%), Gaps = 51/508 (10%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEVDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQG 116
            M        +   K A++ G +      H HG+ S+ +++V++AQ F       L+  +G
Sbjct: 703  MLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQETIVKMAQNFTGGNNINLLVPEG 758

Query: 117  NFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
             FG+    G   AA RY   ++++ A L+    D+  +D+ D       EP  +    P 
Sbjct: 759  QFGSRQQLGSDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMD-EEGTFVEPHHYVPILPM 817

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--EISIEKLLEYIIGPDFPTGGII 232
            LL NG  GI  G AT+IPS +  ++  A  A+I+    +  +  L+ + +G      G +
Sbjct: 818  LLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQVVRNLVPWAVGF----QGTV 873

Query: 233  VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
                ++  E   +G+       R+ + E            IP+          I+ L  A
Sbjct: 874  RRGPDN--EFIAVGKYTAHPNGRFHISE------------IPWMTSIEAFRLHISSLASA 919

Query: 293  KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV- 351
              +  + D           +                      +  R  +N  V S     
Sbjct: 920  DVVQRIADY-----SGANHIDIDLIVRDGSLTTWAECETDLALAQRIYINGTVFSPAGTL 974

Query: 352  -PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             P    L  +L+     R ++  RR + ++  ++  +  L+       +  +      N 
Sbjct: 975  SPIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEMDLARLQSTRKFVEHFRQGQIDFLNA 1034

Query: 411  DK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                  K  +       +   D IL   +    +    ++++++    A+ E++      
Sbjct: 1035 TDDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQADIAKTQAQIEEL------ 1088

Query: 468  GKQQWNQIACEIREVKEIFSKSTDLGRR 495
              ++   +   + E+ + F K+     R
Sbjct: 1089 --KRTTPVKMWLTEL-DKFDKTFQEYER 1113


>gi|71424000|ref|XP_812644.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70877452|gb|EAN90793.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1476

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 90/398 (22%), Positives = 154/398 (38%), Gaps = 36/398 (9%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ V     +++  + ++++   ER+IP + DG KP  R+II +  +  L
Sbjct: 650  TNVNESMNYNVRTVRYSEFVDKELILFSVAD-CERSIPSVIDGLKPGQRKIIFSSFKRRL 708

Query: 67   DFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                   K  ++ G V      H HG+QS+  ++V LAQ F      PL+   G FG   
Sbjct: 709  T---RSIKVVQLAGYVSEHAAYH-HGEQSLVQTIVGLAQNFVGSNNVPLLQQDGQFGTRL 764

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G   AA RY   R+T +A  I    D+  VD++D  +    EP  +    P +L NGT
Sbjct: 765  QGGKDHAAGRYIFTRLTNIARYIYHPSDDFVVDYKDD-DGLSVEPFYYVPVIPMVLVNGT 823

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            SGI  G AT+IP+++  E+ +  + L+   E+   K                       +
Sbjct: 824  SGIGTGFATNIPNYSPLEVIDNLMRLLRGEEVQPMKP--------------WYFGFAGTI 869

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            E    G+  F       V   G     + +TE+P         + + EL   + +    +
Sbjct: 870  EEKEKGK--FVSTGCANVRPDGV----VQITELPIGTWTQGYKKFLEELREKEVVVQYRE 923

Query: 301  IRDESAEDVRIV-LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLD 358
               +   D  +               +E    L   E     N+          +    +
Sbjct: 924  HNTDVTVDFEVFLHPEVLHHWVAQGCVEERLQL--REYIHATNIIAFDREGQITKYRDAE 981

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
             +LKE+   R E   +R  F +  +      L+ ++  
Sbjct: 982  AVLKEFYLVRLEYYAKRRDFLIGDLRSVASKLENMVRF 1019


>gi|322497870|emb|CBZ32946.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1236

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 95/508 (18%), Positives = 189/508 (37%), Gaps = 51/508 (10%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEIDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQG 116
            M        +   K A++ G +      H HG+ S+ +++V++AQ F       L+  +G
Sbjct: 703  MLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQETIVKMAQNFTGGNNINLLVPEG 758

Query: 117  NFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
             FG+    G+  AA RY   ++++ A L+    D+  +D+ D       EP  +    P 
Sbjct: 759  QFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMD-EEGTFVEPHHYVPILPM 817

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--EISIEKLLEYIIGPDFPTGGII 232
            LL NG  GI  G AT+IPS +  ++  A  A+I+    +  +  L+ + +G      G +
Sbjct: 818  LLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQVVRNLVPWAVGF----QGTV 873

Query: 233  VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
                ++  E   +G+       R+ + E            IP+          I+ L  A
Sbjct: 874  RRGPDN--EFIAVGKYTAHPNGRFHISE------------IPWMTSIEAFRLHISSLASA 919

Query: 293  KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV- 351
              +  + D           +                      +  R  +N  V S     
Sbjct: 920  DVVQRIADY-----SGANHIDIDLIVRDGSLTTWAECETDLALAQRIYINGTVFSPTGTL 974

Query: 352  -PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             P    L  +L+     R ++  RR + ++  ++  +  L+       +  +      N 
Sbjct: 975  SPIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEMDLARLQSTRKFVEHFRQGQIDFLNA 1034

Query: 411  DK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                  K  +       +   D IL   +    +    ++++++    A+ E++      
Sbjct: 1035 TDDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQADIAKTQAQIEEL------ 1088

Query: 468  GKQQWNQIACEIREVKEIFSKSTDLGRR 495
              ++   +   + E+ + F K+     R
Sbjct: 1089 --KRTTPVKMWLTEL-DKFDKTFQEYER 1113


>gi|328353447|emb|CCA39845.1| DNA topoisomerase II [Pichia pastoris CBS 7435]
          Length = 1312

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/402 (19%), Positives = 153/402 (38%), Gaps = 31/402 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                 ++ ++  + +   + +  + ++++    R+IP + DGFKP  R+I++   +  L 
Sbjct: 723  EPGVHLDPDLSIIPISDFINKELILFSMADNI-RSIPSMLDGFKPSQRKILYGCYKRNLR 781

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  +GE     H HGDQS+  S++ LAQ F       L+   G FG+    G
Sbjct: 782  SEIKVSQLAGYIGEHSA-YH-HGDQSLIQSIIGLAQDFVGSNNLNLLQPIGGFGSRAQGG 839

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A+A RY    ++++   I    D   +++    +E+  EP  +    P LL NG+ GI
Sbjct: 840  KDASAARYIFTDLSKITRKIFHVDDNPLLNY-LQDDEQTVEPEWYLPIVPMLLINGSEGI 898

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T+IP  N  +I      L              + G +                  
Sbjct: 899  GTGWSTNIPPFNPVDIVANIRRL--------------MDGQEMEEMIPWYRGWNG--SIT 942

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRIPLLEDI 301
            ++    FR+       +       I +TEIP +     + E +        K+   ++D+
Sbjct: 943  KISADKFRMEGNIEQIDD----ETIEITEIPAKTWTINMKEFLLNGIAGSEKQKSWIKDM 998

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGI 360
             ++   D++ V+      +   L M        + T    NM          +   ++ I
Sbjct: 999  EEQHGMDLKFVITLTKEEMKKSLQMGLKERFKLITTINVGNMVAFDAAGKIKKYDNVNEI 1058

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            ++++   R +   RR     + +  ++E +         I E
Sbjct: 1059 IEDYYHVRLDFYQRRKDHLAEVLGNQLEKISSQARFVKMIIE 1100


>gi|146082133|ref|XP_001464455.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
 gi|134068547|emb|CAM66843.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
          Length = 1236

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 95/508 (18%), Positives = 189/508 (37%), Gaps = 51/508 (10%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEIDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQG 116
            M        +   K A++ G +      H HG+ S+ +++V++AQ F       L+  +G
Sbjct: 703  MLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQETIVKMAQNFTGGNNINLLVPEG 758

Query: 117  NFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
             FG+    G+  AA RY   ++++ A L+    D+  +D+ D       EP  +    P 
Sbjct: 759  QFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMD-EEGTFVEPHHYVPILPM 817

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--EISIEKLLEYIIGPDFPTGGII 232
            LL NG  GI  G AT+IPS +  ++  A  A+I+    +  +  L+ + +G      G +
Sbjct: 818  LLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQVVRNLVPWAVGF----QGTV 873

Query: 233  VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
                ++  E   +G+       R+ + E            IP+          I+ L  A
Sbjct: 874  RRGPDN--EFIAVGKYTAHPNGRFHISE------------IPWMTSIEAFRLHISSLASA 919

Query: 293  KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV- 351
              +  + D           +                      +  R  +N  V S     
Sbjct: 920  DVVQRIADY-----SGANHIDIDLIVRDGSLTTWAECETDLALAQRIYINGTVFSPTGTL 974

Query: 352  -PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             P    L  +L+     R ++  RR + ++  ++  +  L+       +  +      N 
Sbjct: 975  SPIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEMDLARLQSTRKFVEHFRQGQIDFLNA 1034

Query: 411  DK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                  K  +       +   D IL   +    +    ++++++    A+ E++      
Sbjct: 1035 TDDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQADIAKTQAQIEEL------ 1088

Query: 468  GKQQWNQIACEIREVKEIFSKSTDLGRR 495
              ++   +   + E+ + F K+     R
Sbjct: 1089 --KRTTPVKMWLTEL-DKFDKTFQEYER 1113


>gi|224007305|ref|XP_002292612.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971474|gb|EED89808.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1179

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 71/462 (15%), Positives = 162/462 (35%), Gaps = 50/462 (10%)

Query: 19   AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +++    ++   + ++ +    R++P++ DG KP  R++++A  +  L       K A++
Sbjct: 695  SITYGDFVDNELIHFSNANNI-RSLPNVVDGLKPSQRKVLYACFKRNLKDE---IKVAQL 750

Query: 79   VGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYT 132
             G        H HG+ S++ +++ +AQ F       L++  G FG     G+ AA+ RY 
Sbjct: 751  AGYCAEHTAYH-HGEASLHSTIIGMAQDFCGSNNINLLTPSGQFGTRLMGGNDAASPRYI 809

Query: 133  EARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
               ++ ++ L+    D    D    Y   + +  EP  F    P LL NG  GI  G +T
Sbjct: 810  FTHLSPLSRLLFPVDD----DMLLNYKEEDGQMIEPEYFCPIIPLLLVNGCQGIGTGWST 865

Query: 190  SIPSHNVQEICEAALA-LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
             IP HN  ++     A L +  + +I   ++   G             E I+   +    
Sbjct: 866  FIPQHNPLDVLNYIRAKLDETKKPAIRPWVKGFEGGITVDSKRGDYVTEGIITPQKNS-- 923

Query: 249  GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
                               +V++E+P  V  +     +  ++    I         +   
Sbjct: 924  ------------------SVVISELPVGVWTNDYKATLVAMLKKAEIKSFSQNHTTTTVS 965

Query: 309  VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              + +     +      M   F L    +   ++    +  ++ +    + I   +   R
Sbjct: 966  FNVKVNAAKLNRLLKGDMLKTFKLRKALSTRNMH-AFTTDMKIARYNSPEEIADAFFPVR 1024

Query: 369  REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
             ++     + R   ++  +E    L+       E ++  + +       +      E   
Sbjct: 1025 LDL----YADRKSVLESNMEYSASLMRNKARFIEAVSANKIDL------LHGRKSKEATT 1074

Query: 429  DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              +  +      +L+  +  + +         +     S ++
Sbjct: 1075 ALLEEMEFSKQSELDAIKSNNNIAQRRESSNVVMDEFMSDEE 1116


>gi|4929497|gb|AAD34021.1|AF150876_1 DNA topoisomerase II [Leishmania donovani]
          Length = 1236

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 95/508 (18%), Positives = 189/508 (37%), Gaps = 51/508 (10%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEIDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQG 116
            M        +   K A++ G +      H HG+ S+ +++V++AQ F       L+  +G
Sbjct: 703  MLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQETIVKMAQNFTGGNNINLLVPEG 758

Query: 117  NFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
             FG+    G+  AA RY   ++++ A L+    D+  +D+ D       EP  +    P 
Sbjct: 759  QFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMD-EEGTFVEPHHYVPILPM 817

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--EISIEKLLEYIIGPDFPTGGII 232
            LL NG  GI  G AT+IPS +  ++  A  A+I+    +  +  L+ + +G      G +
Sbjct: 818  LLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQVVRNLVPWAVGF----QGTV 873

Query: 233  VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
                ++  E   +G+       R+ + E            IP+          I+ L  A
Sbjct: 874  RRGPDN--EFIAVGKYTAHPNGRFHISE------------IPWMTSIEAFRLHISSLASA 919

Query: 293  KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV- 351
              +  + D           +                      +  R  +N  V S     
Sbjct: 920  DVVQRIADY-----SGANHIDIDLIVRDGSLTTWAECETDLALAQRIYINGTVFSPTGTL 974

Query: 352  -PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             P    L  +L+     R ++  RR + ++  ++  +  L+       +  +      N 
Sbjct: 975  SPIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEMDLARLQSTRKFVEHFRQGQIDFLNA 1034

Query: 411  DK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                  K  +       +   D IL   +    +    ++++++    A+ E++      
Sbjct: 1035 TDDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQADIAKTQAQIEEL------ 1088

Query: 468  GKQQWNQIACEIREVKEIFSKSTDLGRR 495
              ++   +   + E+ + F K+     R
Sbjct: 1089 --KRTTPVKMWLTEL-DKFDKTFQEYER 1113


>gi|313192117|emb|CBX19918.1| gyrase A [Clostridium perfringens]
          Length = 249

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 104/252 (41%), Positives = 160/252 (63%), Gaps = 3/252 (1%)

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDN
Sbjct: 1   NTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDN 60

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G   VRA+  +EE   G   I+
Sbjct: 61  PELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRIVVRAKAEIEEEN-GRHKII 118

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  +
Sbjct: 119 VTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLL 178

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + M+  F + M  L     PQ++ L  +L  ++  +++V+ RR+ F +     R  I
Sbjct: 179 YKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHI 237

Query: 390 LKGLLIAYLNID 401
           L+GL+IA  NID
Sbjct: 238 LEGLIIALDNID 249


>gi|67472224|ref|XP_651972.1| DNA topoisomerase II [Entamoeba histolytica HM-1:IMSS]
 gi|40804954|gb|AAR91745.1| topoisomerase II [Entamoeba histolytica]
 gi|56468768|gb|EAL46584.1| DNA topoisomerase II, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1349

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 74/403 (18%), Positives = 155/403 (38%), Gaps = 40/403 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + NT ++++V ++S    + +  + ++     ER+IP + DG KP  R+++    E  + 
Sbjct: 642  DPNTYLDQDVDSISYEDFVHKELILFS-YDDCERSIPSVVDGLKPSQRKVLWTCLEKNIM 700

Query: 68   FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K +++ G V  K   H HG+ S+  ++V +AQ F        +   G FG+   
Sbjct: 701  ---KELKVSQLSGLVSEKSSYH-HGEVSLQATIVNMAQNFCGSNNVNWLLPSGQFGSRLG 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   AA RY   R++ ++  +    D+  +++    +    EP  +    P +L NG  
Sbjct: 757  GGKDQAAARYIYTRLSSISRYLCPKDDDQILEYLIDED-RRIEPKYYFPIIPTVLVNGAD 815

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T++ ++N  ++ +                  Y+ G +F             + 
Sbjct: 816  GIGTGWSTAVSNYNPLDLVD--------------NCRRYLNGEEFKEMKPWFRGWTGQLR 861

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
              + G  G+    +W           I +TE+P Q+      + + + I AK +    + 
Sbjct: 862  KNKDG-SGYDCYGKWR----RLSEDKIEITELPIQIWTDSYKQHLEKCIEAKIVKGYSEY 916

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
                     +        L   +  E I+    + +        L     ++ +   +  
Sbjct: 917  H-------MVNTVHFVIDLVQPMSDEDIWTNLKLVSSVKTTNMHLFNSEYKITKYHTVLD 969

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            IL E+   R +    R    +++++R++ IL         + E
Sbjct: 970  ILSEFCDVRMKGYEERKKAIIESMERQLMILSNKARFIKMVIE 1012


>gi|7243957|gb|AAB46847.2| topoisomerase II subunit A [Coxiella burnetii]
          Length = 106

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/93 (58%), Positives = 70/93 (75%), Gaps = 1/93 (1%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
            + DG KPV RRI++AMSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQP
Sbjct: 14  HIADGLKPVQRRIVYAMSELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQP 73

Query: 105 FVQRYPLISGQGNFGNIDG-DSAAAYRYTEARM 136
           F  RYP + GQGN+G+ D   S AA RYTEAR+
Sbjct: 74  FSFRYPFVDGQGNWGSADDPKSFAAMRYTEARL 106


>gi|29165275|gb|AAO65578.1| DNA gyrase [Salmonella enterica subsp. enterica serovar
           Brandenburg]
          Length = 95

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/95 (56%), Positives = 76/95 (80%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|18369822|dbj|BAB84106.1| DNA topoisomerase II [Talaromyces flavus var. flavus]
          Length = 1094

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 83/401 (20%), Positives = 163/401 (40%), Gaps = 35/401 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  +  ++    + +  + ++++    R+IP + DG KP  R++++      L  
Sbjct: 645  PGTYLDHTLSKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFRRNLKK 703

Query: 69   GAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K   + G V G      HGD S+  ++V LAQ F        +   GNFG+    
Sbjct: 704  D---MKVVELAGHVSGMTAYQ-HGDASLQQTIVGLAQNFVGSNNINCLEPSGNFGSRLQG 759

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   A+ RY   R++  A  +    D+  + + +  + E  EP ++    P +L NGT G
Sbjct: 760  GSDCASARYIYTRLSPFARRVYHSHDDPLLTYNED-DGEKIEPEIYMPVVPMILVNGTDG 818

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G ++SIP++N ++I E    ++D  E  I+ +  +  G     G +     +     
Sbjct: 819  IGTGWSSSIPNYNPEDIVENLRRMMDGEE--IKPMQPWFRG---FNGEVTDMGGD----- 868

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-EDI 301
                      R ++       G   + +TE+P +       +K+ ++I A++ P   +D 
Sbjct: 869  ----------RYKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDY 918

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDG 359
            +D +       +   +       L E +     +      +  V     GR+ +   +D 
Sbjct: 919  KDYNTHHKVHFVIQMDEKHMTAALSEGLEEKFKLTKSIATSNLVAFDPEGRITKYAGVDD 978

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            ILKE+   R +   RR  +++  + R ++ L         I
Sbjct: 979  ILKEFYTIRLKYYERRKQYQLSEMQRELDRLSNQARFVQMI 1019


>gi|313192244|emb|CBY05930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/99 (53%), Positives = 75/99 (75%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
             +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   HVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           DGDSAAA RYTE R+ ++A  ++  ++++ V    T++ 
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVVSWITFDG 99


>gi|799017|emb|CAA60388.1| DNA Gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 95

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/95 (55%), Positives = 72/95 (75%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 1   DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
             ++  ++++ VDF D Y+  +  P V P+K PNL
Sbjct: 61  HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNL 95


>gi|124108735|gb|ABM90944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/92 (57%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHELMADLEKETVDFV 93


>gi|223634721|sp|Q01879|TOP2_PICGU RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|190347620|gb|EDK39928.2| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1400

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 156/386 (40%), Gaps = 34/386 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  ++ + +   + +  + ++++    R+IP + DGFKP  R++++   +  L  
Sbjct: 716  PGTHLDPQIREIPISEFINKELILFSMADNV-RSIPSILDGFKPGQRKVLYGCFKRNLRS 774

Query: 69   GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++VG +      H HG+ S+  ++V LAQ F       L+   G FG+    
Sbjct: 775  E---IKVAQLVGYISEHTGYH-HGEGSLAQTIVGLAQNFVGANNLNLLQPIGLFGSRAAG 830

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   +A RY    +T +  +I   +D+D   +    + +  EP  +    P LL NG  G
Sbjct: 831  GKDFSAVRYIHTNITDLTRVIFNPLDDDLYTYVQD-DAQTVEPEAYLPIIPMLLVNGAEG 889

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T+IPS N  +I      +++  E                      +  E   + 
Sbjct: 890  IGTGWSTNIPSFNPVDIVANIRRMMNGEEPVDM--------------TPWFKGWEG--DL 933

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
             R+    ++V  +    +       + +TEIP +   +  +++     +    P ++D+ 
Sbjct: 934  ERISPEKYKVSGKIEQVDDDT----VEITEIPIKTWTNS-VKEFLLAGLGNDKPWIKDME 988

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGIL 361
            ++   ++R V+      +D  L M  +     + +    NM          +    + IL
Sbjct: 989  EQHGINIRFVVRLSKEEMDKSLRMGLLERFKLISSISLSNMVAFDPQGRIKKYSSANEIL 1048

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRV 387
            K++   R E+  RR     +    ++
Sbjct: 1049 KDYYWARLELYQRRKDMMAENFQNQL 1074


>gi|124108743|gb|ABM90948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|124108705|gb|ABM90929.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 75/94 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           DSAAA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 94


>gi|62719469|gb|AAX93335.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 225

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 88/220 (40%), Positives = 134/220 (60%), Gaps = 2/220 (0%)

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++  +L+ +++D VDF   Y+  + EPVV P++ PNLL NG +GIAVGMAT+IP 
Sbjct: 1   SRLSKISMEMLRDLNKDTVDFVPNYDGTEREPVVLPARIPNLLLNGATGIAVGMATNIPP 60

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A   L+ NP+  +  L+E + GPDFPTGG IV  +  I  +Y  GRG   VR
Sbjct: 61  HNLTEVISAIHILMKNPDADVNDLMEALPGPDFPTGG-IVMGKSEIRHAYETGRGNIVVR 119

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +EE   G   I VTE+PY V K+ LIE+IAEL+  KRI  +  I DES  +   + 
Sbjct: 120 SKTDIEEDKNGKQTIAVTELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIA 179

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
               R    ++++ ++F L+ M+T F  NM  +     P+
Sbjct: 180 IDIRRDASAEVVLNNLFKLTLMQTSFSFNMLAII-EGAPK 218


>gi|18369820|dbj|BAB84105.1| DNA topoisomerase II [Penicillium marneffei]
          Length = 1162

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 156/402 (38%), Gaps = 35/402 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ + K ++    + +  + ++++  + R+IP + DG KP  R++++   +  L 
Sbjct: 663  KPGTFLDHSTKQITYTDFINKELILFSMADNQ-RSIPSVVDGLKPGQRKVLYTCFKRNLK 721

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HG+ S+  ++V LAQ F        +   GNFG+   
Sbjct: 722  KD---MKVVELAGHVSGMTAYQ-HGETSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQ 777

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    DE  + + +  + E  EP ++    P +L NG  
Sbjct: 778  GGADCASARYIYTRLSPFARRVFNQQDEPLLTYNED-DGEKIEPELYVPVVPLILINGAD 836

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I      ++D  E    +                        E
Sbjct: 837  GIGTGWSSSIPNYNPEDIVANLKRMMDGEEPEPMQP--------------WFRGFNG--E 880

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-ED 300
                G   ++   R            + +TE+P +       +K+ ++I A++ P   +D
Sbjct: 881  VTPQGPDRYKFSGRIHELNDKE----VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKD 936

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
             +D +       +   +       + E +     +         V     GR+ +   + 
Sbjct: 937  YKDYNTHTKVHFVIQMDEKHLKAAVEEGLEEKFKLSRTIATTNLVAFDPEGRITKYATVS 996

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             ILKE+ A R +   RR   ++  + ++++           I
Sbjct: 997  DILKEFFAVRLKYYERRKQHQLSELQKQLDKFTNQARFIQMI 1038


>gi|124108715|gb|ABM90934.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108733|gb|ABM90943.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|242016991|ref|XP_002428978.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
 gi|212513807|gb|EEB16240.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
          Length = 1223

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 161/433 (37%), Gaps = 32/433 (7%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L ++N  AVS    + +  + ++ +   ER+IP + DG KP  R+++    +        
Sbjct: 689  LYQKNTIAVSYSDFINKELVLFS-NLDNERSIPSMVDGLKPGQRKVLFTCLKRN---DKK 744

Query: 72   FKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V      H HG+ S+  +++ LAQ +       L+   G FG     G  
Sbjct: 745  EIKVAQLAGSVAEHSAYH-HGEASLMGTIINLAQNYVGSNNLNLLLPIGQFGTRLQGGKD 803

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA+ RY    +  +  LI    D+  + +    + +  EP  +    P +L NG  GI  
Sbjct: 804  AASPRYIFTLLNPLTRLIFHVHDDPLLKYNKD-DNQKIEPEWYIPIIPMVLVNGADGIGT 862

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
            G  T IP+HN +EI +    ++D  E    K                 +  +  +ESY  
Sbjct: 863  GWMTKIPNHNPREIVQNIKRMLDGDEPLPMKP--------------WYKGFKGDIESY-- 906

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            G   + V     +    +     +      Q  K  ++E +   +  K  PL++D ++ +
Sbjct: 907  GDSRYLVSGEISIISNNQLEITELPVGTWTQAYKENVLEPLLHGVENKVPPLIQDYKEYN 966

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGILKE 363
             +     +     S       E +  +  +++   +N          + +   +  ILKE
Sbjct: 967  TDTTVRFVIQMEPSKLQKFEEEGLHKVFKLQSTISINSMCTFDSNGVLKRSEDVTVILKE 1026

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            +   R     +R S+    +    +    +   I      +++   + +      +V   
Sbjct: 1027 FYDLRMLFYVKRKSYLEGMLQSEADKLSNQARFIIEKCDGKLVIENKKKKVMIDELVKLK 1086

Query: 422  SLTENQVDAILNL 434
              ++       N+
Sbjct: 1087 YESDPVKTWKTNI 1099


>gi|312214411|emb|CBX94403.1| similar to DNA topoisomerase II [Leptosphaeria maculans]
          Length = 1716

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 155/393 (39%), Gaps = 33/393 (8%)

Query: 18   KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            + +S    + +  + ++++    R+IP + DG KP  R++++      +       K   
Sbjct: 801  QEISYDDFVNKELILFSMADNL-RSIPSVIDGLKPGQRKVMYTCFRRNIKKD---VKVID 856

Query: 78   IVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRY 131
            + G V G      HG+ S+  ++V LAQ F        +   GNFG+    G  AA+ RY
Sbjct: 857  LAGSVSGTTDY-AHGESSMQGTIVGLAQNFVGTNNINYLEPSGNFGSRLKGGADAASARY 915

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
               R++  A  I    D+  + + ++ + +  EP ++    P +L NG+SGI  G ++ I
Sbjct: 916  IYTRLSPFARRIFHAHDDALLKYGES-DGKPIEPEMYIPVLPTILINGSSGIGTGWSSEI 974

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P+ N  EI +     I   E + ++ +     P  P         E + E+     G  R
Sbjct: 975  PNFNPMEIIDNIR--IRMKEGATKEDMR----PMVPWYKGFTGRTEELGENRYQFTGTIR 1028

Query: 252  VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
                        G   + VTE+P +       EK+ E+I A + P       +     R+
Sbjct: 1029 ----------QTGDNEVEVTELPVRYWTQDFKEKLEEIIKADKTPSFIKDYIDYNTPDRV 1078

Query: 312  VLFPKNRSLDPDLLMES----IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
                K         +      +F L   ++   L +   + GR+ +   +  I++E+   
Sbjct: 1079 HFIIKMEDKYMAAALAKGLEEMFKLFKPQSTTNL-VAFDAHGRIHKYATVLDIIEEFYHV 1137

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            R     +R   +++ + + +  +         I
Sbjct: 1138 RLRYYEKRKQHQLEVMHKELSKMTNQAKFIQMI 1170


>gi|156848882|ref|XP_001647322.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156118007|gb|EDO19464.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1404

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 87/511 (17%), Positives = 188/511 (36%), Gaps = 49/511 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++ N+ A+ +   + +  + ++L+    R+IP + DGFKP  R+++    ++ L 
Sbjct: 657  EPGTVLDPNLDAIPISDFINKELILFSLADNV-RSIPSVLDGFKPGQRKVLFCCFKINLT 715

Query: 68   FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +     K   +  +V  K   H HG++S+  ++V LAQ F       L+   G+FG+   
Sbjct: 716  YE---IKVGTLAAKVSEKTSYH-HGEESLQQTIVGLAQNFVGTNNIYLLKPAGSFGSRAT 771

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLAN 178
             G  AAA RY   ++ +VA  I    D    D    Y   +    EP  +    P +L N
Sbjct: 772  GGKDAAAARYIHTQLNKVARSIFHPSD----DALFNYLEDDGSPIEPEWYLPIIPMVLVN 827

Query: 179  GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
            G  GI  G +T+IPS N  +I +    L+++  +                        + 
Sbjct: 828  GAEGIGTGWSTNIPSFNPLDIIKNIRHLMNDEVMDEMYP--------------WYRGWKG 873

Query: 239  IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIP 296
            +VE  ++    FR+  +        G   + +TE+P +   S + E   +      K  P
Sbjct: 874  VVE--KVDDHRFRLYGKVE----QVGPNVLEITEVPARTWTSSIKEYLLLGLSGNEKTKP 927

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQV 354
             ++D+  E   +    +               ++    + ++  L   V   + G++ + 
Sbjct: 928  WIKDME-EQHTNDIRFIITLTPEEMAKTKKIGVYDRFKLVSQVNLKNMVAFDAHGKIRKY 986

Query: 355  MPLDGILKEWL----AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
              +  IL E+        ++     S      +++    +K L +       +    +  
Sbjct: 987  DTVLDILTEFYYVRLEFYQKRKDYMSQKLQWTVEKISFQVKFLKMIIDKEYTVSNKAKKI 1046

Query: 411  DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
               +        + ++      ++++  + +  E +  +  +       K   ++ S   
Sbjct: 1047 IMKELEGFGFPRINKDGKPHYGSVKIEEIEEGNEIEEGNANEEQDDTVHKPSDIVGSYDY 1106

Query: 471  QWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
                   ++    E + K     + +    E
Sbjct: 1107 LLGMKLWDLT--MERYEKLRAQKQEKEIELE 1135


>gi|110430606|gb|ABG73430.1| DNA topoisomerase II [Pleurotus ostreatus]
          Length = 1571

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 73/401 (18%), Positives = 146/401 (36%), Gaps = 34/401 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  L 
Sbjct: 747  KPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL- 804

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                  K A++VG +      H HG+ S+  ++V LAQ +       L+S  G +G  D 
Sbjct: 805  --KKEIKVAQLVGYISEHAAYH-HGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 861

Query: 123  -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY    +  +  L+ +  D+  +  R T +    EP  +    P +L NG  
Sbjct: 862  GGKDHASPRYIYTEIAPLTRLLCRPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAE 920

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IP +N  +I      L++  E+           P  P         +   E
Sbjct: 921  GIGTGWSTTIPCYNPVDIVANIRRLMNGEEVV----------PMLP----WWRGFKG--E 964

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
               + +  + V               + +TE+P          ++  +I  K   +++D 
Sbjct: 965  VKMVAKHKYDVTGIAK----KLNDTTVEITELPIYKWTQNFKAELEGMIGEKGDGVVKDY 1020

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            ++         +             + +     + T+   +  +      ++ +    + 
Sbjct: 1021 KEYHDNLNVHYVVTMPAKELEKAEQQGLIEFFKLTTKINTSNMMCFDFDGKMKKYDSPEE 1080

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            IL+E+   R     +R  F    +    E L         I
Sbjct: 1081 ILEEFYPVRLAYYQKRKDFLANELQTVFERLSNQARFIQMI 1121


>gi|321268206|gb|ADW78911.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 75/99 (75%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++
Sbjct: 1   EVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           E I+  ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|172998|gb|AAB36610.1| topoisomerase II [Saccharomyces cerevisiae]
          Length = 1429

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 659  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 717

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++   V      H HG+QS+  +++ LAQ F       L+   G FG    
Sbjct: 718  SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 773

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  
Sbjct: 774  GGKDAAAARYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGAE 832

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP  N  EI +    L+++ E  +E++  +  G           + E I  
Sbjct: 833  GIGTGRSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIEP 882

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
                    +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 883  L------RYRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIK 932

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPL 357
            D+  E  +D    +   +            +    + +   L   V     G++ +   +
Sbjct: 933  DME-EQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 991

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            + IL E+   R E   +R     + +   VE     +     I E
Sbjct: 992  NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIE 1036


>gi|312262749|gb|ADQ53044.1| gp52 topoisomerase II medium subunit [Aeromonas phage PX29]
          Length = 438

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 91/471 (19%), Positives = 190/471 (40%), Gaps = 40/471 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    +   ++     +A+ TI+ERA+P + DG KP  R I++++ +   + G  FKK+
Sbjct: 2   KVTKRPISSMVDVEAREFAMYTIEERALPSVVDGLKPAQRYILYSVLK---NAGREFKKN 58

Query: 76  ARIVGEVIGKL-HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           A I G VI +  + HG+ +  D+   +A  +   +P+I G+GNFG+      AA RY   
Sbjct: 59  AAIAG-VISEYGYNHGETAAMDAACLMASTWNNNFPVIQGRGNFGSRAVQEGAAARYIFC 117

Query: 135 RMTQVAELILQGVD--EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
                 + + + +D  E+++      +         P   P +L NG SGIA G +T I 
Sbjct: 118 TKHSNFDSMFKDMDLLEESLA-----DGSILPRYYLP-ILPTVLLNGVSGIATGFSTKIL 171

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HNVQ + +    ++   +    +    +  P F    I +E +             + +
Sbjct: 172 PHNVQSVAKCVEQVLKTGKCDEPE----LQFPKFFGKIIPIEGKS----------QSWTL 217

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
              + +     G   + +TE+P +  + + +  + +L+ A +I       DES  D R  
Sbjct: 218 EGEYELS----GKTKLTITELPPKYDRVKYVTLLNKLVDADKIVSY----DESKFDGREF 269

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ-VMPLDGILKEWLAHRREV 371
            F      + D   E+I     +       + V+      +       ++ +++  R  V
Sbjct: 270 CFKITLKREFDATHENIMKTFKLSQAISQYIRVIDPNGELKAYEKASDLIVDFVNFRFGV 329

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLN--IDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           L +R        + ++   +  +    +    +II       +    + +   L E   +
Sbjct: 330 LQKRIDNAKLVANEKLGFARAKVTFIKHVLDQDIIFTNNTRKQVVEQISAFDDLKEY-AE 388

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
            ++ + L  +   E  +++ ++  L  E +  ++     + Q + I   ++
Sbjct: 389 QLVQMNLYHMTDDEVLKLEKQVIELKKESDFWETSTQKKQYQ-SDIKEFLK 438


>gi|4566382|gb|AAD23325.1| DNA gyrase subunit A [Streptococcus oralis ATCC 35037]
 gi|4566384|gb|AAD23326.1| DNA gyrase subunit A [Streptococcus oralis]
 gi|4566390|gb|AAD23329.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566392|gb|AAD23330.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566394|gb|AAD23331.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566398|gb|AAD23333.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566400|gb|AAD23334.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566402|gb|AAD23335.1| DNA gyrase subunit A [Streptococcus mitis]
          Length = 97

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 51/96 (53%), Positives = 73/96 (76%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 96


>gi|312183505|gb|ADQ42322.1| DNA gyrase subunit A [Actinobaculum schaalii]
          Length = 105

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 52/104 (50%), Positives = 71/104 (68%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G    ++F KSA+IVG+V+G  HPHGD ++YD++VRLAQP+  RYPL+SGQGNFG     
Sbjct: 1   GDRPDSSFSKSAKIVGDVMGHYHPHGDAAIYDTMVRLAQPWSMRYPLVSGQGNFGTSGDL 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
            AAA RYTEARM  +A  +++ + E+ VDF   Y+    EP + 
Sbjct: 61  GAAAPRYTEARMAPLALEMVRDIKENTVDFEPNYDGSLMEPTIL 104


>gi|313768187|ref|YP_004061618.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599794|gb|ADQ91815.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 1073

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 88/466 (18%), Positives = 173/466 (37%), Gaps = 53/466 (11%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            NV+ + +   + +  + ++L+ +K R+I  + DG KP  R++++A     L       K 
Sbjct: 637  NVERLGISDFIHKDLVNFSLADLK-RSIAHVSDGLKPSQRKVLYACFTKNLTSE---MKV 692

Query: 76   ARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAY 129
            A++   V  K   H HG+ S+ D++V+LA  F       L+   G FG     G  A+  
Sbjct: 693  AQLAAYVSEKTSYH-HGEVSLADTIVKLAHNFTGSNNINLLEPCGQFGTRLMGGKDASQT 751

Query: 130  RYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            RY   ++T+ A ++    D    D    Y   + +  EP  +    P +L NGT GI  G
Sbjct: 752  RYIFTKLTKNARILFDPKD----DPVLNYLDDDGKQIEPDYYVPILPTVLVNGTEGIGTG 807

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             ++ IP  N  +I      +I    +   K        D  TG             +   
Sbjct: 808  FSSYIPPFNPLDIKHNIERIIRGETVVPMKPWF-----DKFTG-----------RVFSNE 851

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G +     W           ++VTE+P         E +  LI  K+I    +      
Sbjct: 852  DGLWITEGVW-----KYSGKNVLVTELPPGRWTQDYKEYLDTLIEKKKITNYVNNSTTDD 906

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGILKEW 364
             +  I  +              I     ++  F ++   L      + +    + IL ++
Sbjct: 907  VNFIIEGY----------TGNDIIKDFKLQKTFHVSNMHLFHPTRGIHKYESPEEILTDF 956

Query: 365  LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI--DEIIAIIRNEDKPKPVMVSRFS 422
            +  R E   +R +  ++ +  + + L+ +      +  +++I   R   + +  M + F 
Sbjct: 957  VKIRSETYKKRKAHLIRVLKEKTKKLENMSKFIDMVIHEKLIVFRRKRVELERQMENIFD 1016

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
              +   + +LN++           I+ E      E + +  + +  
Sbjct: 1017 KIDGSYEYLLNIKTYQYTLEAIQSIREETSKSRIEFDTLQQMSHID 1062


>gi|156538202|ref|XP_001601580.1| PREDICTED: similar to topoisomerase II [Nasonia vitripennis]
          Length = 1510

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 86/525 (16%), Positives = 175/525 (33%), Gaps = 50/525 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E++ +AVS    +    + ++      R+IP++ DG KP  R+++    +        
Sbjct: 678  LYEKDTRAVSFSDFINVELVLFSNYDNI-RSIPNMMDGLKPGQRKVLFTCFKRN---DKR 733

Query: 72   FKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++   V      H HG+ S+  ++V LAQ F       L+   G FG     G  
Sbjct: 734  EVKVAQLGASVAEHSAYH-HGEMSLMATIVNLAQNFVGSNNINLLQPIGQFGTRLAGGKD 792

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            +A+ RY    ++ +A  I    D+  +      + +  EP  +    P +L NG  GI  
Sbjct: 793  SASPRYIFTMLSPLARYIFHKHDDPLLKHEYD-DNQKIEPTYYVPIIPMVLVNGADGIGT 851

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
            G  T IP++N +EI E    ++D  +               P        + +I      
Sbjct: 852  GWMTKIPNYNPREIIENLQRMMDGADPR-------------PMSPFYKNFKGTIESC--- 895

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---LIIAKRIPLLEDIR 302
            G   + +     +     G   + +TE+P         E + E       K  P++ D +
Sbjct: 896  GDYRYVISGEISII----GPDKVEITELPIGTWTQAYKETVLEPMLHGSDKTPPVITDYK 951

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR--FPLNMNVLSMGRVPQVMPLDGI 360
            + + + +   +    R    +L  + +     ++T               + +   +  I
Sbjct: 952  EYNTDTMVHFVVTLQRDKLAELERDGLHKAFKLQTTTSITSMCAFDDNLCLKKFDNVCQI 1011

Query: 361  LKEWLAHRREVLFRRSSFRMQ--AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            ++ +   R ++  +R  +       +      +   I       +    + +      +V
Sbjct: 1012 MRTFFTVRLDLYQKRKDYLEGILQAESAKLSNQSRFIMEKCDGTLTIENKKKKDMIAELV 1071

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             R   ++  V          L +  E +  +E ++  A    +     +           
Sbjct: 1072 RRGYDSDPVVAW-------KLAQNREEEEVAENEDDEASTSAVVVEKENFDYLLGMTMWS 1124

Query: 479  IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            +        K   L +R     E+ R    T      E     + 
Sbjct: 1125 L----TKEKKDELLKQRDEKLAELHRLQARTPLSLWKEDLDNLLT 1165


>gi|321268228|gb|ADW78922.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268230|gb|ADW78923.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 76/99 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM ++
Sbjct: 1   GEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKI 60

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           +E I+  ++++ VDF+  +++   EP V P+K P LL N
Sbjct: 61  SEEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLIN 99


>gi|313192262|emb|CBY05939.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 77/98 (78%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           GDSAAA RYTE R+ ++A  ++  ++++ VDF D  ++
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNNDD 99


>gi|124108755|gb|ABM90954.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 75/94 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           DSAAA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 94


>gi|115448107|ref|NP_001047833.1| Os02g0699700 [Oryza sativa Japonica Group]
 gi|113537364|dbj|BAF09747.1| Os02g0699700 [Oryza sativa Japonica Group]
          Length = 956

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 117/291 (40%), Gaps = 36/291 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S T ++   K +     + +  + ++++ +  R+IP + DG KP  R+I+    +  L  
Sbjct: 671 SGTHLDTEGKYIKYSDFINKELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNLV- 728

Query: 69  GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID-- 122
                K A+  G V      H HG+QS+  ++  +AQ F       L+   G FG  D  
Sbjct: 729 --KEIKVAQFSGYVSEHSAYH-HGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQG 785

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANG 179
           G  AA+ RY    ++ +   I    D    D    Y   + +  EP  +    P +L NG
Sbjct: 786 GKDAASARYIFTLLSPITRSIFPKDD----DILLNYLDEDGQSIEPTWYVPILPMVLVNG 841

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           + GI  G +T IP++N ++I      L+++              P  P        + SI
Sbjct: 842 SEGIGTGWSTFIPNYNPRDIVANLRRLLNDE-------------PVEPMDPWYRGFKGSI 888

Query: 240 VES-YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL 289
            ++  + G   + V     V +       + +TE+P +       E +  +
Sbjct: 889 QKTGTKAGGVSYTVTGIIEVVDD----TTLRITELPIRRWSQDYKEFLISI 935


>gi|170575369|ref|XP_001893211.1| DNA topoisomerase II, alpha isozyme [Brugia malayi]
 gi|158600906|gb|EDP37957.1| DNA topoisomerase II, alpha isozyme, putative [Brugia malayi]
          Length = 1511

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 82/406 (20%), Positives = 146/406 (35%), Gaps = 37/406 (9%)

Query: 3    VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
             D ++    L ++N   VS +  + +  + + L+   ER+IP L DG KP  R+++    
Sbjct: 702  EDGLTEEY-LYDKNTYVVSFKDFVNKELVLF-LNCDNERSIPSLVDGLKPGQRKVLFTCF 759

Query: 63   EMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNF 118
            +          K A++ G V  +   H HG+ S+  ++V LAQ F       L+   G F
Sbjct: 760  K---RADKKEVKVAQLAGAVGEMSAYH-HGEASLMSTIVNLAQDFVGSNNINLLLPIGQF 815

Query: 119  GNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G     G  +A+ RY   ++  V + +   +DE+ + F      +  EP  +    P +L
Sbjct: 816  GTRLQGGKDSASPRYIFTQLNPVTKALFPSIDENVLRFLF-EENQKIEPEWYCPVIPTVL 874

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG  GI    +T +P +N +EI +   ALID  E               P        R
Sbjct: 875  VNGAEGIGTAWSTKVPCYNPREIVDNMRALIDGKEPK-------------PLIPWYKHFR 921

Query: 237  ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAK 293
             +I +        F       V      +  I +TE+P +       E +   +     K
Sbjct: 922  GTIEQL---DDQRFVCNGEVAVI----NNETIEITELPIRTWTQTYKETVLVPMMDGNDK 974

Query: 294  RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            +   + D ++   +     +   N         E +  +  ++T       V        
Sbjct: 975  QPAFITDFKEYHTDTTVKFVIKMNGDKLRASKEEGLHKVFKLQTVINTTSMVYEHYSRVC 1034

Query: 354  VMPLDGILK-EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             +  D         +  ++       R +    R    +GLL A  
Sbjct: 1035 QVLFDPFGYLRRFENVTDICKEFFEIRKKKYIERKSFQEGLLRAQS 1080


>gi|94467525|dbj|BAE93904.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 90

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 71/90 (78%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGN
Sbjct: 1   LFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           FG++DGDSAAA RYTE RM ++A  +L  +
Sbjct: 61  FGSVDGDSAAAMRYTEVRMAKIAHELLADL 90


>gi|145491451|ref|XP_001431725.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398830|emb|CAK64327.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1274

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 77/459 (16%), Positives = 173/459 (37%), Gaps = 34/459 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N +  V+     +     + +  + ++++    R+IP L DG KP  R+++ A  +  L 
Sbjct: 641  NHDLYVDHTKSELGYSEFIHKELIHFSMADNI-RSIPSLMDGLKPGQRKVLFACFKRNL- 698

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K  ++ G +      H HGD S+  +++ +AQ F       L+  +G FG+   
Sbjct: 699  --KQEIKVVQLGGYIAEHSAYH-HGDLSLVSTIIGMAQNFVGSNNINLLLPKGQFGSRAM 755

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY    + ++   I    D+  + +++  + +  EP  +    P  L NG  
Sbjct: 756  GGKDHASARYISTALNKITRYIFPEQDDHLLKYQED-DGQMVEPEYYVPIIPMSLVNGAE 814

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSI ++N  E+                ++   + G  F        + + I+E
Sbjct: 815  GIGTGWSTSIQNYNPIELVN--------------QIKNRLDGQPFQPMTPFYRNFDGIIE 860

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            +   G G  +      + +    +  I + E+P +       E   +  +A+    + D+
Sbjct: 861  NLPNGNGIIK-----GIIDCNEATDIITIRELPIKKWTRNYKE-WLDKEMAEEGSQIVDL 914

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            R+   +               DL     +            +   S  ++ +   +  I+
Sbjct: 915  REYHTKYKIHFEIQMVDGFVSDLKNPLEYFKLSTPASCSNMVLFDSNNKIKKYECVSDIM 974

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI--DEIIAIIRNEDKPKPVMVS 419
            +E+   R +   +R  + +  +DR V++L   L     +  +EI      +      +  
Sbjct: 975  EEFYQVRLQFYHKRKEYLVSKLDREVQLLDNKLKFIKMVISEEIQIRNVKKIDLVKQLDK 1034

Query: 420  RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                  +Q+  + + ++++    ++ +   + D    E+
Sbjct: 1035 NGFTRFSQLIQVKSTKVKAFGDSQKQKKNVDDDESEDEQ 1073


>gi|32453746|ref|NP_861955.1| DNA topisomerase II medium subunit [Enterobacteria phage RB69]
 gi|32350565|gb|AAP76164.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage RB69]
          Length = 441

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 95/450 (21%), Positives = 175/450 (38%), Gaps = 28/450 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            + + +L+  ++   LAYA+ T++ RAIP++ DGFKPV R ++H   ++       F K 
Sbjct: 2   QLNSRNLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVHRALDLARGNKEKFHKL 61

Query: 76  ARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           A I G V  +G  H HG+ S  D+   +A  +   YPL+ GQGNFG+     AAA RY  
Sbjct: 62  ASIAGGVADLG-YH-HGESSAQDAGALMANTWNNNYPLLDGQGNFGSRTVQKAAASRYIF 119

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSE-PVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+++        V +D  ++   + +++   P  +    P +L NG SGIA G AT+I 
Sbjct: 120 ARVSKN----FYNVYKDT-EYAPAHEDKEHIPPKFYLPIIPTVLLNGVSGIATGYATNIL 174

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H+ + + +A L  +    ++  K    +  P+F      V+ R  I      G   F  
Sbjct: 175 PHSFKSVKKAVLQALQGKNVTKPK----VEFPEFRGEVHEVDGRYEI-----HGTYKFTS 225

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  + E+                 + + +    +             R E +      
Sbjct: 226 RTQMQITEIPYKFDRETYVSKVLDPLEDKGLISWEDDCGEHGFGFKVKFRKEYSLPDDEE 285

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  +    D  L+      ++ +  +  L +    +  +        + K ++  R +  
Sbjct: 286 LRHEKIMKDFSLIERRSQNITVINEKGKLAVYDNVVDLI---KDFVEVRKTYVQKRIDNK 342

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
              S    +    +   +K ++       EI+   +        +       E  VD ++
Sbjct: 343 ILESEKAFKLAFAKAHFIKKVI-----SGEIVIQGKTRKALTEELAQIEMYKE-HVDKLV 396

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
            L +  +   E  ++  E      E E   
Sbjct: 397 GLNIFHITSDESRKLAEEAKAKKEENEYWK 426


>gi|240952142|ref|XP_002399322.1| DNA topoisomerase II, putative [Ixodes scapularis]
 gi|215490528|gb|EEC00171.1| DNA topoisomerase II, putative [Ixodes scapularis]
          Length = 1582

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/393 (19%), Positives = 150/393 (38%), Gaps = 39/393 (9%)

Query: 18   KAVSLRFALEERYLAYA-LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
            K ++    + +  + ++ +    ER+IP L DG KP  R++++   +          K A
Sbjct: 697  KNITYEDFVNKELILFSNMD--NERSIPSLVDGLKPGQRKVLYTCFKRN---DKREIKVA 751

Query: 77   RIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYR 130
            ++ G V      H HG+ S+  +++ LAQ F       L+   G FG     G  AA+ R
Sbjct: 752  QLAGSVAEHSAYH-HGEMSLMSTIIGLAQDFVGSNNINLLLPIGQFGTRLQGGKDAASPR 810

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
            Y    ++ +A LI+  +D+  ++     + +  EP  +    P +L NG  GI  G +T 
Sbjct: 811  YIFTMLSPLARLIVPALDDPVLNHLYD-DNQKIEPEFYMPILPMVLVNGAEGIGTGWSTK 869

Query: 191  IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
            +P+++ +E+      +I   E    K       P F      V+  E             
Sbjct: 870  VPNYDPREVVANLRRMIAGDEPKPMK-------PWFKNFKGTVDQVEE------------ 910

Query: 251  RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---LIIAKRIPLLEDIRDESAE 307
              R     E     S  I +TE+P +       E + E       K  P++ D ++   +
Sbjct: 911  -QRFVVSGEVALLSSNSIEITELPVRTWTQNYKENVLETMLHGTEKVPPMITDYKEYHTD 969

Query: 308  DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGILKEWL 365
                 +   +         E +  +  ++T    +  VL   +  +        I++++ 
Sbjct: 970  TTVRFVVTMSEDKLSKAQDEGLHKVFKLQTTLCTSSMVLFNSKGVLTTFRNSTEIMQDFY 1029

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
              R E   +R ++ +  +    + L+      L
Sbjct: 1030 ETRLEGYKKRKAYMLGLLTAEAKRLENQARFIL 1062


>gi|261335183|emb|CBH18177.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1455

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/409 (21%), Positives = 154/409 (37%), Gaps = 37/409 (9%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ VS    + +  + ++++   ER+IP + DG KP  R+I+ +  +  L
Sbjct: 650  TNINESMNYNVRNVSYSEFVHKELILFSVAD-CERSIPSVVDGLKPGQRKIMFSAFKRNL 708

Query: 67   DFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                   K A++ G V      H HG+QS+  ++V LAQ +      PL+   G FG   
Sbjct: 709  V---RSLKVAQLAGYVSEHAAYH-HGEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTRL 764

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G   AA RY   R+T +A  I    D+  V++RD  +    EP  +    P +L NGT
Sbjct: 765  QGGKDHAAGRYIFTRLTDIARRIYHPSDDFIVEYRDD-DGLSVEPFYYVPVIPMVLVNGT 823

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            +GI  G AT+IP+++  ++ +    L+   E+   K                       +
Sbjct: 824  AGIGTGFATNIPNYSPLDVIDNLNRLLSGEELQPMKP--------------WYFGFTGTI 869

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            E    G+  F       V   G     + +TE+P      +  + + +L   + +    +
Sbjct: 870  EEREKGK--FVSSGCATVRPDGV----VHITELPIGTWTQQYKKFLEDLREREIVIQYRE 923

Query: 301  IRDESAEDVRIVLFP-KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
               +   D  + + P   R       +E    L   E     N+         ++     
Sbjct: 924  HNTDVTVDFEVFIHPEVLRQWVAQGCVEERLQL--REYIHATNIIAFDREG--KITKYLD 979

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
                        L   +  R   +++       L      ++E+I    
Sbjct: 980  AESVLKEFYLVRLEYYARRREFLLEQLQRAALKLENMVRFVNEVIDGTF 1028


>gi|83367164|gb|ABC17641.1| DNA topoisomerase IIalpha [Trypanosoma brucei]
          Length = 1455

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/409 (21%), Positives = 154/409 (37%), Gaps = 37/409 (9%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ VS    + +  + ++++   ER+IP + DG KP  R+I+ +  +  L
Sbjct: 650  TNINESMNYNVRNVSYSEFVHKELILFSVAD-CERSIPSVVDGLKPGQRKIMFSAFKRNL 708

Query: 67   DFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                   K A++ G V      H HG+QS+  ++V LAQ +      PL+   G FG   
Sbjct: 709  V---RSLKVAQLAGYVSEHAAYH-HGEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTRL 764

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G   AA RY   R+T +A  I    D+  V++RD  +    EP  +    P +L NGT
Sbjct: 765  QGGKDHAAGRYIFTRLTDIARRIYHPSDDFIVEYRDD-DGLSVEPFYYVPVIPMVLVNGT 823

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            +GI  G AT+IP+++  ++ +    L+   E+   K                       +
Sbjct: 824  AGIGTGFATNIPNYSPLDVIDNLNRLLSGEELQPMKP--------------WYFGFTGTI 869

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            E    G+  F       V   G     + +TE+P      +  + + +L   + +    +
Sbjct: 870  EEREKGK--FVSSGCATVRPDGV----VHITELPIGTWTQQYKKFLEDLREREIVIQYRE 923

Query: 301  IRDESAEDVRIVLFP-KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
               +   D  + + P   R       +E    L   E     N+         ++     
Sbjct: 924  HNTDVTVDFEVFIHPEVLRQWVAQGCVEERLQL--REYIHATNIIAFDREG--KITKYLD 979

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
                        L   +  R   +++       L      ++E+I    
Sbjct: 980  AESVLKEFYLVRLEYYARRREFLLEQLQRAALKLENMVRFVNEVIDGTF 1028


>gi|9624859|gb|AAF86355.1| DNA Topoisomerase II [Leishmania infantum]
          Length = 1236

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/508 (18%), Positives = 188/508 (37%), Gaps = 51/508 (10%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEIDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQG 116
            M        +   K A++ G +      H HG+ S+ +++V++AQ F       L+  +G
Sbjct: 703  MLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQETIVKMAQNFTGGNNINLLVPEG 758

Query: 117  NFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
             FG+    G+  AA RY   ++++ A L+    D+  +D+ D       EP  +    P 
Sbjct: 759  QFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMD-EEGTFVEPHHYVPILPM 817

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--EISIEKLLEYIIGPDFPTGGII 232
            LL NG  GI  G AT+IPS +  ++  A   +I+    +  +  ++ + +G      G +
Sbjct: 818  LLCNGAVGIGFGFATTIPSFHPLDVSAAVRGMINGESAKQVVRNIVPWAVGF----QGTV 873

Query: 233  VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
                ++  E   +G+       R+ + E            IP+          I+ L  A
Sbjct: 874  RRGPDN--EFIAVGKYTAHPNGRFHISE------------IPWMTSIEAFRLHISSLASA 919

Query: 293  KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV- 351
              +  + D           +                      +  R  +N  V S     
Sbjct: 920  DVVQRIADY-----SGANHIDIDLIVRDGSLTTWAECETDLALAQRIYINGTVFSPTGTL 974

Query: 352  -PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             P    L  +L+     R ++  RR + ++  ++  +  L+       +  +      N 
Sbjct: 975  NPIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEMDLARLQSTRKFVEHFRQGQIDFLNA 1034

Query: 411  DK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                  K  +       +   D IL   +    +    ++++++    A+ E++      
Sbjct: 1035 TDDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQADIAKTQAQIEEL------ 1088

Query: 468  GKQQWNQIACEIREVKEIFSKSTDLGRR 495
              ++   +   + E+ + F K+     R
Sbjct: 1089 --KRTTPVKMWLTEL-DKFDKTFQEYER 1113


>gi|323455286|gb|EGB11155.1| hypothetical protein AURANDRAFT_22331 [Aureococcus anophagefferens]
          Length = 1228

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/388 (18%), Positives = 142/388 (36%), Gaps = 32/388 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKE-RAIPDLRDGFKPVHRRIIHAMSEMGL 66
               T V+  V A+S    + +  + +  S     R+IP + DG KP  R+++ A  +  L
Sbjct: 682  EPGTFVDYAVDAMSYGDFVNKELILF--SVADNQRSIPSVVDGLKPSQRKVLFACFKRKL 739

Query: 67   DFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                   K A++ G V      H HG+ S+  ++V +AQ F       L++  G FG   
Sbjct: 740  ---KKEIKVAQLAGYVSEHAAYH-HGEMSLTGTIVGMAQDFVGSNNVNLLTPAGQFGTRI 795

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G  AA+ RY   ++  VA  +    D+  +D+ +  + +  EP  +    P  L NG 
Sbjct: 796  MGGKDAASSRYIFTKLEAVARKVFHPDDDFVLDYLED-DGQSIEPTYYVPVLPFALCNGA 854

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G ATS+P++  + +      +ID  ++    L  +  G     G I+ +  ++  
Sbjct: 855  DGIGTGWATSVPNYAPRALIGVLRRMIDA-DVGAADLAPHYRG---FGGDIVAKGGKNAG 910

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR--IPLL 298
                LGR                    ++V E+P+     + +E         +  +   
Sbjct: 911  AFAVLGRAT------------RLDDVTVLVDELPWTHDYKQWLEVQLSGDDKTKAWVKDF 958

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++   ++     + +       D +  +  +     +E     +           +   D
Sbjct: 959  KENHTDTRVSFTVTVTKGEDLDDAEAALGGLEKKFKLEGSLATSNMNFFDDTGLVIDKYD 1018

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRR 386
                   A  +  +   +  +   +  +
Sbjct: 1019 APFDVIKAFYKVRVATYAKRKAHLVKAK 1046


>gi|29165279|gb|AAO65580.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Java]
          Length = 95

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/95 (56%), Positives = 75/95 (78%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|56269784|gb|AAH86970.1| Top2a protein [Danio rerio]
 gi|197247280|gb|AAI65253.1| Top2a protein [Danio rerio]
          Length = 1570

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 161/427 (37%), Gaps = 41/427 (9%)

Query: 18   KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            K++S    + +  + ++ S   ER+IP + DG KP  R+++    +          K A+
Sbjct: 690  KSLSYHDFINKELVLFSNSD-NERSIPCMVDGLKPGQRKVVFCCFKRN---DKREVKVAQ 745

Query: 78   IVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRY 131
            + G V  +   H HG+ S+  ++V LAQ F       L+   G FG     G  +A+ RY
Sbjct: 746  LAGSVAEMSAYH-HGEVSLMMTIVGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRY 804

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATS 190
                ++ +A L+   VD++ + +   Y++    EP  +    P +LANG  GI  G A+ 
Sbjct: 805  IFTMLSTLARLLFPVVDDNLLKY--NYDDNLRVEPEWYMPIIPLVLANGGEGIGTGWASR 862

Query: 191  IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
            IP+++V+EI      +++  E            P  P+      + + +       +  +
Sbjct: 863  IPNYDVREIINNIHRMLNGEEPL----------PMLPSYKGFKGTIDEL------AKNQY 906

Query: 251  RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---LLEDIRDESAE 307
                   + +       I +TE+P +       E + E+++        L+ D ++   +
Sbjct: 907  VNNGEVAIIDS----TTIEITELPVKTWTQTYKENVLEVMLNGTEKVPALITDYKEYHTD 962

Query: 308  DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWL 365
                 +         +     +  +  ++     N  VL      + +   +  ILKE+ 
Sbjct: 963  TTVRFVVKMTEERLREAEAAGLHKVFKLQNLLTCNSMVLFDHVGSLKKYESVQDILKEFF 1022

Query: 366  AHRREVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
              R +    R  + +     +      +   I       ++   + + +   ++      
Sbjct: 1023 ELRMKYYVLRKDWLVGMLGAESAKLSNQARFILEKIQGTLVIENKPKKELIRMLQQMGYD 1082

Query: 424  TENQVDA 430
            ++     
Sbjct: 1083 SDPVKAW 1089


>gi|312599337|gb|ADQ91360.1| hypothetical protein BpV2_193c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 1073

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 88/466 (18%), Positives = 172/466 (36%), Gaps = 53/466 (11%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            NV+ + +   + +  + ++L+ +K R+I  + DG KP  R++++A     L       K 
Sbjct: 637  NVERLGISDFIHKDLVNFSLADLK-RSIAHVSDGLKPSQRKVLYACFTKNLTSE---MKV 692

Query: 76   ARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAY 129
            A++   V  K   H HG+ S+ D++V+LA  F       L+   G FG     G  A+  
Sbjct: 693  AQLAAYVSEKTSYH-HGEVSLADTIVKLAHNFTGSNNINLLEPCGQFGTRLMGGKDASQT 751

Query: 130  RYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            RY   ++T+ A ++    D    D    Y   + +  EP  +    P +L NGT GI  G
Sbjct: 752  RYIFTKLTKSARILFDPKD----DPVLNYLDDDGKQIEPDYYVPILPTVLVNGTEGIGTG 807

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             ++ IP  N  +I      +I+   +   K        D  TG             +   
Sbjct: 808  FSSYIPPFNPSDIKHNIERIINGENVIPMKPWF-----DKFTG-----------RVFSNE 851

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G +     W           ++VTE+P         E +  LI  K+I    +      
Sbjct: 852  DGLWITEGVW-----KSSGKSVIVTELPPGRWTQDYKEYLDTLIEKKKITNYVNNSTTDD 906

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGILKEW 364
             +  I  +              I     ++  F ++   L      + +    + IL ++
Sbjct: 907  VNFSIEGY----------TGNDIIKDFKLQKTFHVSNMHLFHPTKGIHKYESPEEILTDF 956

Query: 365  LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI--DEIIAIIRNEDKPKPVMVSRFS 422
            +  R E   +R +  +  +  + + L+ +      +  +++I   R   + +  M   F 
Sbjct: 957  VKIRSETYKKRKTHLICVLKEKTKKLENMSKFIDMVIHEKLIVFRRKRVELEREMEKIFD 1016

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
              +   + +LN++           I+ E      E + +  + +  
Sbjct: 1017 KIDGSYEYLLNIKTYQYTDEAIQSIREETSKSRIELDTLQQMSHID 1062


>gi|294950051|ref|XP_002786436.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
 gi|239900728|gb|EER18232.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
          Length = 1579

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 17/221 (7%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             + +  + ++   +  R+IP + DGFKP  R+++    +  L       K A+ VG V 
Sbjct: 690 DFINKELVQFSKYDVM-RSIPSMVDGFKPSQRKVLFCALKRNLKSDT---KVAQFVGYVS 745

Query: 84  --GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMT 137
                H HG+QS+   +V +AQ F       L+   G FG     G  AA+ RY   R++
Sbjct: 746 EHSAYH-HGEQSLESCIVGMAQDFTGSNNLNLLFPSGQFGTRQQGGKDAASGRYIYTRLS 804

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           +    I    D+D +++  T   +  EP  +    P +L NG  GI  G +T++ S++ +
Sbjct: 805 KYTRTIFHPDDDDVLEY-LTEEGQSIEPKWYCPIIPMVLVNGAEGIGTGWSTNVLSYDPR 863

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           EI     ALI    + +  +  +  G    TG +    +  
Sbjct: 864 EIIHLLRALIRG--VELHDIHPWYRG---FTGSVERNDKNG 899


>gi|212645845|ref|NP_498849.3| hypothetical protein R05D3.1 [Caenorhabditis elegans]
 gi|218512148|sp|P34534|TOP2M_CAEEL RecName: Full=Putative DNA topoisomerase 2, mitochondrial; Short=DNA
            topoisomerase II; Flags: Precursor
          Length = 1054

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/469 (15%), Positives = 165/469 (35%), Gaps = 39/469 (8%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
             N  T  ++    +S +  ++ + + + +    +R+IP L DG KP  R+I+  +  +  
Sbjct: 571  ENEITNEDDGKTEISYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTL--LNN 627

Query: 67   DFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
               +   K +++ G V  +   H HG++S+  +++R+ Q F      PL+   G FG   
Sbjct: 628  MDESTEIKVSQLAGAVAHRQSYH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRH 686

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT-YNEEDSEPVVFPSKFPNLLANG 179
              G+ AA+ RY    +     L+    D+D +  +         EP       P +L NG
Sbjct: 687  EGGNDAASARYIFTALAPTTRLLFPQADDDLL--QKNVEEGMVVEPTWLCPIVPLILING 744

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            T GI  G +T I + N  +I +    +    +    +        +F     +V   + I
Sbjct: 745  TEGIGTGWSTKIANRNPIDIID---MIRRKIDSISTEYEIPPFYEEFRGKLEVVTPTKFI 801

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
                       R  A           + I + E+P  +  S+  EK+++++    +    
Sbjct: 802  SSGKIQLIRPERKNAST---------FSIEIVELPIGIWTSKYKEKLSKIVETLPVLEFS 852

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP--- 356
            +   E     RI L  K  S         +     + T    N  +       +      
Sbjct: 853  ERHTEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGNIS 912

Query: 357  -----LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI------IA 405
                    + ++    R ++       ++  ++ ++  ++ +    + I  +        
Sbjct: 913  EIAAEFFEVRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEIRSMGRNQLEEK 972

Query: 406  IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
            +     +  P+     +  +     +L + +  L   E  +++      
Sbjct: 973  LQEMGFRVDPMATIAKNSKKANYGYLLEMPVSRLTSDEMKRLEERKSRR 1021


>gi|7388329|sp|Q9Y8G8|TOP2_PENCH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|5441259|dbj|BAA82356.1| type II DNA topoisomerase [Aspergillus terreus]
          Length = 1587

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 80/402 (19%), Positives = 162/402 (40%), Gaps = 38/402 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ +V  ++    + +  + ++++    R+IP + DG KP  R++++      L  
Sbjct: 710  PGTFLDHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFRRNLKK 768

Query: 69   GAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K   + G V G      HG+ S+  ++V LAQ F        +   GNFG+    
Sbjct: 769  D---MKVVELAGHVSGTTAYQ-HGEGSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQG 824

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   A+ RY   R+   A  +    D+  + + +  +    E  V+    P +L NG  G
Sbjct: 825  GADCASARYIYTRLWPFARRVFHNHDDPLLTYNED-DGAKIEQEVYVPVVPMILINGADG 883

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G ++S P++N ++I E    ++D     ++ +  +  G    TG +    ++     
Sbjct: 884  IGTGWSSSTPNYNPEDIVENLKRMMDG--EPLKPMQPWFRG---FTGEVTAVGQD----- 933

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP----LL 298
                      R ++       G   + +TE+P +       +K+ ++I A++ P      
Sbjct: 934  ----------RFKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDY 983

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            +D    +     I +  K+        +E  F LS   T    N+      R+ +   ++
Sbjct: 984  KDYNTHTKVHFVIQMDEKHMKTAIAEGLEEKFKLSKTMT--TTNLVAFDPERITKYASVE 1041

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             I+KE+ A R +   RR  +++  + + ++ L         I
Sbjct: 1042 DIMKEFYAVRLKYYERRKQYQLSEMQKELDKLSNQARFVQMI 1083


>gi|331028975|gb|AAM54162.3|L07144_1 Hypothetical protein R05D3.12a [Caenorhabditis elegans]
          Length = 1170

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/469 (15%), Positives = 165/469 (35%), Gaps = 39/469 (8%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
             N  T  ++    +S +  ++ + + + +    +R+IP L DG KP  R+I+  +  +  
Sbjct: 687  ENEITNEDDGKTEISYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTL--LNN 743

Query: 67   DFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
               +   K +++ G V  +   H HG++S+  +++R+ Q F      PL+   G FG   
Sbjct: 744  MDESTEIKVSQLAGAVAHRQSYH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRH 802

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT-YNEEDSEPVVFPSKFPNLLANG 179
              G+ AA+ RY    +     L+    D+D +  +         EP       P +L NG
Sbjct: 803  EGGNDAASARYIFTALAPTTRLLFPQADDDLL--QKNVEEGMVVEPTWLCPIVPLILING 860

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            T GI  G +T I + N  +I +    +    +    +        +F     +V   + I
Sbjct: 861  TEGIGTGWSTKIANRNPIDIID---MIRRKIDSISTEYEIPPFYEEFRGKLEVVTPTKFI 917

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
                       R  A           + I + E+P  +  S+  EK+++++    +    
Sbjct: 918  SSGKIQLIRPERKNAST---------FSIEIVELPIGIWTSKYKEKLSKIVETLPVLEFS 968

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP--- 356
            +   E     RI L  K  S         +     + T    N  +       +      
Sbjct: 969  ERHTEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGNIS 1028

Query: 357  -----LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI------IA 405
                    + ++    R ++       ++  ++ ++  ++ +    + I  +        
Sbjct: 1029 EIAAEFFEVRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEIRSMGRNQLEEK 1088

Query: 406  IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
            +     +  P+     +  +     +L + +  L   E  +++      
Sbjct: 1089 LQEMGFRVDPMATIAKNSKKANYGYLLEMPVSRLTSDEMKRLEERKSRR 1137


>gi|110456308|gb|ABG74699.1| GyrA [Ureaplasma urealyticum]
          Length = 101

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 67/89 (75%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGDQ VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR+++++ 
Sbjct: 13  VIGKYHPHGDQVVYQTIVRMAQDFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARLSKISY 72

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
            +L+ +D++ VDF   Y+  + EP V PS
Sbjct: 73  ELLKYIDKETVDFVPNYDASEQEPSVLPS 101


>gi|18369808|dbj|BAB84099.1| DNA topoisomerase II [Aspergillus candidus]
          Length = 1096

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 157/403 (38%), Gaps = 37/403 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ + K ++    + +  + ++++  + R+IP + DG KP  R++++   +  + 
Sbjct: 645  KPGTFLDHSTKQITYTDFINKELILFSMADNQ-RSIPSVVDGLKPGQRKVLYTCFKRNVK 703

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   + G V G      HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 704  KD---MKVVELAGHVSGMTAYQ-HGDTSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQ 759

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    DE  + + +  + E  EP ++    P +L NG  
Sbjct: 760  GGADCASARYIYTRLSPFARRVFNQQDEPLLTYNED-DGEKIEPELYVPVVPLILINGAD 818

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY-IIGPDFPTGGIIVESRESIV 240
            GI  G ++SIP++N ++I      ++D  E    +       G   P G           
Sbjct: 819  GIGTGWSSSIPNYNPEDIVANLKRMMDGEEPEPMQPWFRGFHGDVTPQGPD--------- 869

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-E 299
                        R ++           + +TE+P +       +K+ ++I A++ P   +
Sbjct: 870  ------------RYKFSGRIQELNEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIK 917

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPL 357
            D +D +       +   +       + E +     +         V     GR+ +   +
Sbjct: 918  DYKDYNTHTKVHFVIQMDEKHLKSAVEEGLEEKFKLSKTIATTNLVAFDPEGRITKYATV 977

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
              ILKE+ A R +   RR   ++  + + ++ L         I
Sbjct: 978  SDILKEFFAVRLKYYERRKQHQLSELQKDLDKLTNQARFVQMI 1020


>gi|74025306|ref|XP_829219.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70834605|gb|EAN80107.1| DNA topoisomerase II, putative [Trypanosoma brucei]
          Length = 1424

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 86/409 (21%), Positives = 154/409 (37%), Gaps = 37/409 (9%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ VS    + +  + ++++   ER+IP + DG KP  R+I+ +  +  L
Sbjct: 650  TNINESMNYNVRNVSYSEFVHKELILFSVAD-CERSIPSVVDGLKPGQRKIMFSAFKRNL 708

Query: 67   DFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                   K A++ G V      H HG+QS+  ++V LAQ +      PL+   G FG   
Sbjct: 709  V---RSLKVAQLAGYVSEHAAYH-HGEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTRL 764

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G   AA RY   R+T +A  I    D+  V++RD  +    EP  +    P +L NGT
Sbjct: 765  QGGKDHAAGRYIFTRLTDIARRIYHPSDDFIVEYRDD-DGLSVEPFYYVPVIPMVLVNGT 823

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            +GI  G AT+IP+++  ++ +    L+   E+   K                       +
Sbjct: 824  AGIGTGFATNIPNYSPLDVIDNLNRLLSGEELQPMKP--------------WYFGFTGTI 869

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            E    G+  F       V   G     + +TE+P      +  + + +L   + +    +
Sbjct: 870  EEREKGK--FVSSGCATVRPDGV----VHITELPIGTWTQQYKKFLEDLREREIVIQYRE 923

Query: 301  IRDESAEDVRIVLFP-KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
               +   D  + + P   R       +E    L   E     N+         ++     
Sbjct: 924  HNTDVTVDFEVFIHPEVLRQWVAQGCVEERLQL--REYIHATNIIAFDREG--KITKYLD 979

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
                        L   +  R   +++       L      ++E+I    
Sbjct: 980  AESVLKEFYLVRLEYYARRREFLLEQLQRAALKLENMVRFVNEVIDGTF 1028


>gi|18266788|sp|O61078|TOP2_LEICH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|6453822|gb|AAC05295.2| DNA topoisomerase II [Leishmania chagasi]
          Length = 1236

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 94/508 (18%), Positives = 187/508 (36%), Gaps = 51/508 (10%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEVDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQG 116
            M        +   K A++ G +      H HG+ S+ +++V++AQ F       L+  +G
Sbjct: 703  MLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQETIVKMAQNFTGGNNINLLVPEG 758

Query: 117  NFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
             FG+    G+  AA RY   ++++   L+    D+  +D+ D       EP  +    P 
Sbjct: 759  QFGSRQQLGNDHAAPRYIFTKLSRFGRLLFPEEDDPLLDYMD-EEGTFVEPHHYVPILPM 817

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--EISIEKLLEYIIGPDFPTGGII 232
            LL NG  GI  G AT+IPS +  ++  A  A+I+    +  +  L+ + +G      G +
Sbjct: 818  LLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQVVRNLVPWAVGF----QGTV 873

Query: 233  VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
                ++  E   +G+       R+ + E            IP+          I+ L  A
Sbjct: 874  RRGPDN--EFIAVGKYTAHPNGRFHISE------------IPWMTSIEAFRLHISSLASA 919

Query: 293  KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV- 351
              +  + D           +                      +  R  +N  V S     
Sbjct: 920  DVVQRIADY-----SGANHIDIDLIVRDGSLTTWAECETDLALAQRIYINGTVFSPTGTL 974

Query: 352  -PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             P    L  +L+     R ++  RR + ++  +   +  L+       +  +      N 
Sbjct: 975  SPIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMKMDLARLQSTRKFVEHFRQGQIDFLNA 1034

Query: 411  DK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                  K  +       +   D IL   +    +    ++++++    A+ E++      
Sbjct: 1035 TDDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQADIAKTQAQIEEL------ 1088

Query: 468  GKQQWNQIACEIREVKEIFSKSTDLGRR 495
              ++   +   + E+ + F K+     R
Sbjct: 1089 --KRTTPVKMWLTEL-DKFDKTFQEYER 1113


>gi|322489879|emb|CBZ25140.1| mitochondrial DNA topoisomerase II [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1236

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 93/506 (18%), Positives = 180/506 (35%), Gaps = 47/506 (9%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEIDIDRSKKMLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQG 116
            M        +   K A++ G +      H HG+ S+ +++V++AQ F       L+  +G
Sbjct: 703  MLR---RHSSEASKVAQLSGYISEASAFH-HGEASLQETIVKMAQNFTGGNNINLLVPEG 758

Query: 117  NFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
             FG+    G   AA RY   ++++ A L+    D+  +D+ D       EP  +    P 
Sbjct: 759  QFGSRQQLGSDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMD-EEGTFVEPHHYVPILPM 817

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
            LL NG  GI  G AT+IP+ +  ++  A  A+I+                 +  G     
Sbjct: 818  LLCNGAVGIGFGFATTIPAFHPLDVSAAVRAMINGESAKQVMRNLV----PWAVGFQGTV 873

Query: 235  SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
             R    E   +G+       R+ + E            IP+          I+ L  A  
Sbjct: 874  RRGPDNEFIAVGKYTAHPNGRFHISE------------IPWMTSIEAFRLHISSLASADV 921

Query: 295  IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV--P 352
            +  + D           +                      +  R  +N  V S      P
Sbjct: 922  VQRIADY-----SGANHIDIDLIVREGSLTTWAECETDLALAQRIYINGTVFSPTGTLSP 976

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
                L  +L+     R ++  RR + ++  ++  +  L+       +  +      N   
Sbjct: 977  IDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEMDLARLQSTRKFVEHFRQGQIDFLNATD 1036

Query: 413  ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                K  +       +   D IL   +    +    ++++++    A+ E++        
Sbjct: 1037 DTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQADIAKTQAQIEEL-------- 1088

Query: 470  QQWNQIACEIREVKEIFSKSTDLGRR 495
            ++   +   + E+ + F K+     R
Sbjct: 1089 KRTTPVKMWLTEL-DKFDKTFQEYER 1113


>gi|50291033|ref|XP_447949.1| hypothetical protein [Candida glabrata CBS 138]
 gi|51338747|sp|O93794|TOP2_CANGA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|49527260|emb|CAG60900.1| unnamed protein product [Candida glabrata]
          Length = 1406

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 153/403 (37%), Gaps = 37/403 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +  + +   + +  + ++L+    R+IP + DGFKP  R++++   +  L 
Sbjct: 656  EPGTVLDPTLNEIPISDFINKELILFSLADNV-RSIPSVLDGFKPGQRKVLYTCFKKNLT 714

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A +   V      H HG+Q++  +++ +AQ F        +   G FG    
Sbjct: 715  TEK---KVANLAPAVSDYTAYH-HGEQALVQTIIGMAQNFVGTNNIYFLKPNGAFGTRAT 770

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY    + ++A  +    D+    +    +E+  EP  +    P +L NG  
Sbjct: 771  GGKDAAAARYIYTELNKIARKVFHPADDPLFRYV-QEDEKTVEPEWYLPVVPMVLINGAE 829

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP  N  ++      L+++ E+  + +  +  G                +E
Sbjct: 830  GIGTGWSTSIPPFNPLDVVNNIRHLLNDEEM--DDMHPWFRG---------WTGTMEKIE 878

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
            S R     +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 879  SQR-----YRMYGRIE----QVGPNTLEITELPARTWTSTIKEHLLLGLGGSEKVKPWIK 929

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPL 357
            D+  E   +    +                +    + +   L   V     G++ +   +
Sbjct: 930  DME-EQHAETIKFIIKLTDEEMTKTRKLGFYERFKLISPISLQNMVAFDYRGKIKKYDHV 988

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
              ILK++   R E   +R  +    +    E L   +     I
Sbjct: 989  HEILKDFYEVRLEYYQKRKDYMTGRLQWEAEKLSFQVKFIKMI 1031


>gi|46370596|gb|AAS90120.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1662

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 97/546 (17%), Positives = 197/546 (36%), Gaps = 38/546 (6%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    V+ + K ++ +  + +  + ++ S    R+IP L DG KP  R+I+ A  +  L 
Sbjct: 640  DPEENVDHSQKHLTYKDFVNKELINFSNSD-NARSIPSLCDGLKPGQRKILFACFKRNLK 698

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++ G V      H HG+QS+  ++V +AQ F        +   G FG+   
Sbjct: 699  NE---IKVAQLSGYVAEHSAYH-HGEQSLESTIVGMAQSFVGTNNINYLMPIGQFGSRNM 754

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY    + ++   +    D D + +      +  EP+ +    P  L NG  
Sbjct: 755  GGKEAASARYIHTCLNKITRCVFPEPD-DHILYYLEDEGQQVEPIYYLPIIPTALLNGAD 813

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP +N +E+ ++         +    LL +  G    TG I    +  I  
Sbjct: 814  GIGTGWSTSIPCYNPRELVDSIEK--RMMGVPFTDLLPWYKG---FTGEISNNEKSQIT- 867

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                G+          + E+    W         +  K+ L EK+       + P +EDI
Sbjct: 868  --VSGKYHLVNETTIEITELPIKKW--------IRDYKNFLEEKLES--TKDKDPEIEDI 915

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            ++  A +    +   +      +  E I     +++  P    VL     ++ +   +  
Sbjct: 916  KEYHAGNRVHFVVKMSEKQMEKVQREGIDKYFKLQSTIPTTNMVLFNHEGKLTRYANICE 975

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVE----ILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            I++E+   R     RR  + +  I+R +E      + +L        +    R +   + 
Sbjct: 976  IMEEFYEVRLNAYKRRKEYLVSKIERDLEILSNKKRFILAVINESIRVRNAKRKDLIKEL 1035

Query: 416  VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             +     + +        L  +  ++  +   +   +    E    +         W+  
Sbjct: 1036 SVQGYVQMKDMPKIKSSKLTSQLEQEQNQDSNEENFETNPNEINAKEYNYLLSLPMWSLT 1095

Query: 476  ACEIREVKEIFSKSTDLGRR--RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
              ++ E+K+      D   +   T   ++ + D     + + + E        +   +  
Sbjct: 1096 YEKVEEIKQEQKNKQDELDKLVATEVIDIWKEDLKNFIECLDQIEEEEDEEMRKRMKKQS 1155

Query: 534  KSHSVD 539
             S    
Sbjct: 1156 NSKVKQ 1161


>gi|290790184|pdb|3L6V|A Chain A, Crystal Structure Of The Xanthomonas Campestris Gyrase A
           C- Terminal Domain
 gi|290790185|pdb|3L6V|B Chain B, Crystal Structure Of The Xanthomonas Campestris Gyrase A
           C- Terminal Domain
          Length = 370

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 80/287 (27%), Gaps = 49/287 (17%)

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALH--------FKEGDSLKIALHAHTTDRILLLS 567
             E + V +S+ G+ +     +                KE D +      +T D +L  +
Sbjct: 5   APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFT 64

Query: 568 TDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + GK + LP   L        G  I   I L   + +        Y     + + +  G 
Sbjct: 65  SSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGT 124

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
                 SE      +GK  + +   + +  V    GD  V +   N K + F    +  M
Sbjct: 125 VKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM 184

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEG-------------------------------- 708
            R   GVR      G     +      G                                
Sbjct: 185 GRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNG 244

Query: 709 --LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +    Y +           RG  G +  +   R+GK + +
Sbjct: 245 DVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRA 291



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGEN 667
             +L  +  G       +E     R  +  + +     + + ++ V+  + D V ++ + 
Sbjct: 247 AYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDG 306

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
             L+     +I  + R  +GV L     G     +
Sbjct: 307 GTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAV 341


>gi|146182234|ref|XP_001024182.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila]
 gi|146143912|gb|EAS03937.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1680

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 97/546 (17%), Positives = 197/546 (36%), Gaps = 38/546 (6%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    V+ + K ++ +  + +  + ++ S    R+IP L DG KP  R+I+ A  +  L 
Sbjct: 658  DPEENVDHSQKHLTYKDFVNKELINFSNSD-NARSIPSLCDGLKPGQRKILFACFKRNLK 716

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++ G V      H HG+QS+  ++V +AQ F        +   G FG+   
Sbjct: 717  NE---IKVAQLSGYVAEHSAYH-HGEQSLESTIVGMAQSFVGTNNINYLMPIGQFGSRNM 772

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY    + ++   +    D D + +      +  EP+ +    P  L NG  
Sbjct: 773  GGKEAASARYIHTCLNKITRCVFPEPD-DHILYYLEDEGQQVEPIYYLPIIPTALLNGAD 831

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP +N +E+ ++         +    LL +  G    TG I    +  I  
Sbjct: 832  GIGTGWSTSIPCYNPRELVDSIEK--RMMGVPFTDLLPWYKG---FTGEISNNEKSQIT- 885

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                G+          + E+    W         +  K+ L EK+       + P +EDI
Sbjct: 886  --VSGKYHLVNETTIEITELPIKKW--------IRDYKNFLEEKLES--TKDKDPEIEDI 933

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            ++  A +    +   +      +  E I     +++  P    VL     ++ +   +  
Sbjct: 934  KEYHAGNRVHFVVKMSEKQMEKVQREGIDKYFKLQSTIPTTNMVLFNHEGKLTRYANICE 993

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVE----ILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            I++E+   R     RR  + +  I+R +E      + +L        +    R +   + 
Sbjct: 994  IMEEFYEVRLNAYKRRKEYLVSKIERDLEILSNKKRFILAVINESIRVRNAKRKDLIKEL 1053

Query: 416  VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             +     + +        L  +  ++  +   +   +    E    +         W+  
Sbjct: 1054 SVQGYVQMKDMPKIKSSKLTSQLEQEQNQDSNEENFETNPNEINAKEYNYLLSLPMWSLT 1113

Query: 476  ACEIREVKEIFSKSTDLGRR--RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
              ++ E+K+      D   +   T   ++ + D     + + + E        +   +  
Sbjct: 1114 YEKVEEIKQEQKNKQDELDKLVATEVIDIWKEDLKNFIECLDQIEEEEDEEMRKRMKKQS 1173

Query: 534  KSHSVD 539
             S    
Sbjct: 1174 NSKVKQ 1179


>gi|124108703|gb|ABM90928.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 93


>gi|313217160|emb|CBY38323.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 153/437 (35%), Gaps = 45/437 (10%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
               E +  V+ +  +++  + ++  +   RAIP   DG KP  R+++    +       +
Sbjct: 669  YDREQINYVTYKDFIDKELVIFSHESCL-RAIPCSADGLKPGQRKVLWTCFKRK---DKS 724

Query: 72   FKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V  +   H HG+ S+ D++++LAQ +       L+   G FG+    G  
Sbjct: 725  KVKVAQLSGSVSEMSAYH-HGEVSLMDTIIKLAQNYVGANNVNLLEPFGQFGSRRVGGKD 783

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE-EDSEPVVFPSKFPNLLANGTSGIA 184
             AA RY   R+  +   +    D+    F+  Y++    EP  +    P +L NG+SGI 
Sbjct: 784  HAAARYIFTRLAPITRKLYPEADDAL--FKRNYDDNRMVEPTHYCPIVPMVLVNGSSGIG 841

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IP+HN+++  +    +I+  E                      E     +ES  
Sbjct: 842  TGWSTNIPNHNIRDCIKNIRRMIEGKEPLDLVP--------------FYEGYRGTIESL- 886

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------L 298
             G           + E       + +TE+P QV      +K+ ++   +          +
Sbjct: 887  -GTARAVSFGEIALLESDV----VEITELPPQVWTDDYKQKLMKMQGGQDDKGKELPKLI 941

Query: 299  EDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVM 355
            ED  + S+ D    IV     +  +        +        F   M + +         
Sbjct: 942  EDFDNNSSHDRVKFIVTMSPTQMREARKQGLHEYFGLVKSMVFANTMVLFNHAGKLTVYN 1001

Query: 356  PLDGILKEWLAHRREVL--FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
                I+K+    R+                  +    +   I      +I  +       
Sbjct: 1002 NTTDIVKDHYELRKTYYLKRHNFLLEKMEARVQFITNRARFILENIEKKITVMNVKRKAI 1061

Query: 414  KPVMVSRFSLTENQVDA 430
            +  +  R   ++     
Sbjct: 1062 EAKLKERGYASDPVKAW 1078


>gi|302826295|ref|XP_002994651.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
 gi|300137231|gb|EFJ04283.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
          Length = 980

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/393 (17%), Positives = 146/393 (37%), Gaps = 39/393 (9%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T +++  + ++    + +  + ++L+    R++P + DG KP  R+I+ A  +     
Sbjct: 482 PGTFLDQTQRVITYSDFINKELILFSLAD-LARSVPSMVDGLKPGQRKILFAAFKRNFTS 540

Query: 69  GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
            A   K A+  G V      H HG+QS+  +++ +AQ F       +++  G FG     
Sbjct: 541 QA---KVAQFSGYVSEHSAYH-HGEQSLASTIIGMAQNFVGSNNINILAPIGQFGTRSQG 596

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANG 179
           G   A+ RY    +T +   I    D    D    +   + +  EP  +    P +L NG
Sbjct: 597 GKDHASARYIYTSLTPLTRTIFPKPD----DILLNFLREDGQSIEPFWYAPILPMVLVNG 652

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           + GI  G +T +P++N ++I      L+ +  +                     +  +  
Sbjct: 653 SEGIGTGWSTFVPNYNPRDIVTNLKHLLRDEPLEPMDP--------------WYKGFKGT 698

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---IIAKRIP 296
           +      +          + E       I V E+P +       E +  L       + P
Sbjct: 699 I-VKSASKESGVSYTVTGIVE-QVNETTIRVLELPIRKWTQDYKEFLEALLCGTEKIKEP 756

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQV 354
            ++D R+ + +         +     + L E +     + T    +   L      + + 
Sbjct: 757 SIKDYREHNTDTRVHFEISLSEEKMAEALAEGLTKKFKLSTTISTSNMNLFDKDGHIRKY 816

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
              + IL+++   R E+  +R   +++ +   +
Sbjct: 817 DTPEQILEDFYHIRLELYVKRKEVQVENLQYEL 849


>gi|313235194|emb|CBY25067.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 153/437 (35%), Gaps = 45/437 (10%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
               E +  V+ +  +++  + ++  +   RAIP   DG KP  R+++    +       +
Sbjct: 669  YDREQINYVTYKDFIDKELVIFSHESCL-RAIPCSADGLKPGQRKVLWTCFKRK---DKS 724

Query: 72   FKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V  +   H HG+ S+ D++++LAQ +       L+   G FG+    G  
Sbjct: 725  KVKVAQLSGSVSEMSAYH-HGEVSLMDTIIKLAQNYVGANNVNLLEPFGQFGSRRVGGKD 783

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE-EDSEPVVFPSKFPNLLANGTSGIA 184
             AA RY   R+  +   +    D+    F+  Y++    EP  +    P +L NG+SGI 
Sbjct: 784  HAAARYIFTRLAPITRKLYPEADDAL--FKRNYDDNRMVEPTHYCPIVPMVLVNGSSGIG 841

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IP+HN+++  +    +I+  E                      E     +ES  
Sbjct: 842  TGWSTNIPNHNIRDCIKNIRRMIEGKEPLDLVP--------------FYEGYRGTIESL- 886

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------L 298
             G           + E       + +TE+P QV      +K+ ++   +          +
Sbjct: 887  -GTARAVSFGEIALLESDV----VEITELPPQVWTDDYKQKLMKMQGGQDDKGKELPKLI 941

Query: 299  EDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVM 355
            ED  + S+ D    IV     +  +        +        F   M + +         
Sbjct: 942  EDFDNNSSHDRVKFIVTMSPTQMREARKQGLHEYFGLVKSMVFANTMVLFNHAGKLTVYN 1001

Query: 356  PLDGILKEWLAHRREVL--FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
                I+K+    R+                  +    +   I      +I  +       
Sbjct: 1002 NTTDIVKDHYELRKTYYLKRHNFLLEKMEARVQFITNRARFILENIEKKITVMNVKRKAI 1061

Query: 414  KPVMVSRFSLTENQVDA 430
            +  +  R   ++     
Sbjct: 1062 EAKLKERGYASDPVKAW 1078


>gi|321268214|gb|ADW78915.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268216|gb|ADW78916.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268218|gb|ADW78917.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268222|gb|ADW78919.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268226|gb|ADW78921.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 76/99 (76%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           E I+  ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|124108689|gb|ABM90921.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108697|gb|ABM90925.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108699|gb|ABM90926.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|124108711|gb|ABM90932.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|302812673|ref|XP_002988023.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
 gi|300144129|gb|EFJ10815.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
          Length = 1151

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/393 (17%), Positives = 147/393 (37%), Gaps = 39/393 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T +++  + ++    + +  + ++L+    R++P + DG KP  R+I+ A  +     
Sbjct: 653  PGTFLDQTQRVITYSDFINKELILFSLAD-LARSVPSMVDGLKPGQRKILFAAFKRNFTS 711

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
             A   K A+  G V      H HG+QS+  +++ +AQ F       +++  G FG     
Sbjct: 712  QA---KVAQFSGYVSEHSAYH-HGEQSLASTIIGMAQNFVGSNNINILAPIGQFGTRSQG 767

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANG 179
            G   A+ RY    +T +   I    D    D    +   + +  EP  +    P +L NG
Sbjct: 768  GKDHASARYIYTSLTPLTRTIFPKPD----DILLNFLREDGQSIEPFWYAPILPMVLVNG 823

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            + GI  G +T +P++N ++I      L+ + ++                     +  +  
Sbjct: 824  SEGIGTGWSTFVPNYNPRDIVTNLKHLLRDEQLEPMDP--------------WYKGFKGT 869

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---IIAKRIP 296
            +      +          + E       I V E+P +       E +  L       + P
Sbjct: 870  I-VKSATKESGVSYTVTGIVE-QVNETTIRVLELPIRKWTQDYKEFLEALLCGTEKIKEP 927

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQV 354
             ++D R+ + +         +     + L E +     + T    +   L      + + 
Sbjct: 928  SIKDYREHNTDTRVHFEISLSEEKMAEALAEGLTKKFKLSTTISTSNMNLFDKDGHIRKY 987

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
               + IL+++   R E+  +R   +++ +   +
Sbjct: 988  DTPEQILEDFYHIRLELYVKRKEVQVENLQYEL 1020


>gi|219121754|ref|XP_002181225.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407211|gb|EEC47148.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1165

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 19/254 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS    + +  + ++ +    R+IP   DG KP  R++++A  +  L       K A++
Sbjct: 687 NVSYEDFINKEMIHFSNADNI-RSIPSAIDGLKPSQRKVLYACFKRKLKSE---IKVAQL 742

Query: 79  VGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYT 132
            G        H HG+ S+  +++ +AQ F       L+   G FG     G  AA+ RY 
Sbjct: 743 TGYCAEHTAYH-HGEASLQSTIIGMAQDFVGSNNINLLVPSGQFGTRIMGGADAASPRYI 801

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
              +  +A  +    D+  + + +  + +  EP  +    P L+ NG  GI  G +T IP
Sbjct: 802 YTYLAPIARSLFPEADDTLLSYLED-DGQQIEPEFYCPIIPLLVVNGCQGIGTGWSTFIP 860

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIG------PDFPTGGIIVESRESIVESYRLG 246
            H+  ++ E  LA +D  E  + K+  +  G      PD    G +   R S +    + 
Sbjct: 861 PHSANDVLEYILAKLDGAE-RLPKIHPFARGFQGRIEPDPNGNGYVSFGRSSCISDRTIL 919

Query: 247 RGGFRVRARWCVEE 260
                +R      +
Sbjct: 920 IDELPLRCWTNKYK 933


>gi|313192280|emb|CBY05948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/99 (57%), Positives = 78/99 (78%), Gaps = 1/99 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +A   +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 5   YA-WRIGHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNF 63

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF DT
Sbjct: 64  GSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDT 102


>gi|3152709|gb|AAC17123.1| DNA topoisomerase IV C subunit [Streptococcus pneumoniae]
          Length = 107

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 74/107 (69%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI+++M++    F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+  
Sbjct: 1   RRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEM 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
            GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   +++ 
Sbjct: 61  HGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDT 107


>gi|24020930|gb|AAN40860.1| ParC [Streptococcus salivarius]
          Length = 106

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 74/106 (69%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   +++ 
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDT 106


>gi|4566388|gb|AAD23328.1| DNA gyrase subunit A [Streptococcus oralis]
          Length = 97

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 51/96 (53%), Positives = 73/96 (76%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 96


>gi|124108747|gb|ABM90950.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108753|gb|ABM90953.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108757|gb|ABM90955.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108761|gb|ABM90957.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 94


>gi|66391455|ref|YP_238980.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB43]
 gi|62288543|gb|AAX78526.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB43]
          Length = 387

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 97/420 (23%), Positives = 167/420 (39%), Gaps = 41/420 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             S++  ++   L +AL TI  RAIP L DGFKPVHR  +H+ ++ G    + F+K A I
Sbjct: 2   ERSIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFVHSAAKGG----SGFQKVASI 57

Query: 79  VGEV-IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            G V I   H HG+ SV ++L  +A  +    PL    G FG+       A RY   +++
Sbjct: 58  AGGVAIYGYH-HGETSVEEALSLMAAHWCNNIPLFDRDGFFGSRLVKKPGAPRYIYCKLS 116

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            + + I    D          + E   P  +    P +L NG  GIA G AT+IP H+  
Sbjct: 117 PLFKAIYMDEDLT----IPHEDPEHLPPAYYLPIIPMVLVNGFRGIAKGYATNIPPHDPV 172

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
            +                  + Y+ G DF       + +  IV+    G+  + ++ +  
Sbjct: 173 SVLNG--------------CVSYLNGKDFTLDLKYPQFKGDIVDGTMYGK--YELQGKTK 216

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
                     +V+TEIP +  + + I  + +L     I   +D+  E             
Sbjct: 217 ----------LVITEIPVKYDRVKYIAILDKLEEKGCIVSYKDLSKE----DFRYEITLK 262

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R     L  E I     +      N+NV+  G++      + +LK+++  R  V  +R  
Sbjct: 263 REYANGLTHEKILKDFGLIENSNPNINVIFNGKLHSYERPETLLKDFVDIRMTVYQQRIE 322

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKPKPVMVSRFSLTENQVDAILNLRL 436
            R+Q     +      +     + E    ++          VS +   EN  + ++ + +
Sbjct: 323 KRIQEAKEALARALAKVEFIDQMIESPDSLKGLSRSEAVQFVSTWKGCENHAEILVAMNI 382


>gi|302782265|ref|XP_002972906.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
 gi|300159507|gb|EFJ26127.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
          Length = 1151

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 68/393 (17%), Positives = 146/393 (37%), Gaps = 39/393 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T +++  + ++    + +  + ++L+    R++P + DG KP  R+I+ A  +     
Sbjct: 653  PGTFLDQTQRVITYSDFINKELILFSLAD-LARSVPSMVDGLKPGQRKILFAAFKRNFTS 711

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
             A   K A+  G V      H HG+QS+  +++ +AQ F       +++  G FG     
Sbjct: 712  QA---KVAQFSGYVSEHSAYH-HGEQSLASTIIGMAQNFVGSNNINILAPIGQFGTRSQG 767

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANG 179
            G   A+ RY    +T +   I    D    D    +   + +  EP  +    P +L NG
Sbjct: 768  GKDHASARYIYTSLTPLTRTIFPKPD----DILLNFLREDGQSIEPFWYAPILPMVLVNG 823

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            + GI  G +T +P++N ++I      L+ +  +                     +  +  
Sbjct: 824  SEGIGTGWSTFVPNYNPRDIVTNLKHLLRDEPLEPMDP--------------WYKGFKGT 869

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---IIAKRIP 296
            +      +          + E       I V E+P +       E +  L       + P
Sbjct: 870  I-VKSASKESGVSYTVTGIVE-QVNETTIRVLELPIRKWTQDYKEFLEALLCGTEKIKEP 927

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQV 354
             ++D R+ + +         +     + L E +     + T    +   L      + + 
Sbjct: 928  SIKDYREHNTDTRVHFEISLSEEKMAEALAEGLTKKFKLSTTISTSNMNLFDKDGHIRKY 987

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
               + IL+++   R E+  +R   +++ +   +
Sbjct: 988  DTPEQILEDFYHIRLELYVKRKEVQVENLQYEL 1020


>gi|322786140|gb|EFZ12747.1| hypothetical protein SINV_05088 [Solenopsis invicta]
          Length = 1518

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 91/525 (17%), Positives = 177/525 (33%), Gaps = 51/525 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E++ + VS    +    + Y+      R+IP+L DG KP  R+++    +        
Sbjct: 683  LYEKDTRTVSFSDFINVELVLYSNYDNV-RSIPNLMDGLKPGQRKVLFTCLKRN---DKR 738

Query: 72   FKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V      H HG+ S+  +++ LAQ F       L+   G FG     G  
Sbjct: 739  EVKVAQLAGSVAEHSAYH-HGETSLMATIINLAQNFVGSNNINLLQPIGQFGTRLAGGKD 797

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA+ RY    ++ +A  I    D+  +      + +  EPV +    P +L NG  GI  
Sbjct: 798  AASPRYIFTMLSPLARYIFHKHDDALLRHEYD-DNQKIEPVFYTPVIPMVLVNGADGIGT 856

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
            G  T IP++N +EI E    ++D  +            P  P       S ES  E   +
Sbjct: 857  GWMTKIPNYNPREIIENLHRMMDGADPK----------PMIPYYKNFKGSVESCGEYRYV 906

Query: 246  GRGGFRVRA--RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              G   V    +  + E+  G+W         Q  K  ++E +      K   ++ D ++
Sbjct: 907  ISGEISVIGPDKVEITELPIGTW--------TQTYKETVLEPMLH-GSDKTPAIITDYKE 957

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
             + +     +   NR    +L  + +     ++T   +           Q +     + +
Sbjct: 958  YNTDTAVHFIVIMNRDKLVELERDGLHKAFKLQTTTSITSMCAFDEN--QCLNKYDNVVQ 1015

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVE------ILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             L    +V       R   ++  ++        +   I       ++   + +      +
Sbjct: 1016 ILKLFYKVRLDMYHKRKDYLEGILQAEAAKLSNQARFIIEKCDGTLVVENKKKKDMITEL 1075

Query: 418  VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            + R   T+  V   ++     + +      +   ++  +          +          
Sbjct: 1076 IRRNYETDPVVAWKMSQNREQVLE------EVVENDEESAPTTDVIERENFDYLLGMTMW 1129

Query: 478  EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
             +        K   L +R     E+ R    T      E     +
Sbjct: 1130 SL----TKEKKDDLLRQRDEKIAELKRLQARTPMSLWKEDLDSLL 1170


>gi|90017820|gb|ABD83866.1| topoisomerase IV subunit A [Haemophilus sp. COAD036]
 gi|90017822|gb|ABD83867.1| topoisomerase IV subunit A [Haemophilus sp. COAD165]
          Length = 99

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 71/99 (71%), Gaps = 1/99 (1%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYT
Sbjct: 1   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           E+R+++++E++L  + +  VD++  ++   +EP   P++
Sbjct: 61  ESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPAR 99


>gi|321268212|gb|ADW78914.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 101

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 76/99 (76%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           E I+  ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|299779202|ref|YP_003734396.1| gp52 topoisomerase II medium subunit [Enterobacteria phage IME08]
 gi|298105931|gb|ADI55575.1| gp52 topoisomerase II medium subunit [Enterobacteria phage IME08]
          Length = 460

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 97/461 (21%), Positives = 180/461 (39%), Gaps = 39/461 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + ++      L+  ++   LAYA+ T++ RAIP++ DGFKPV R ++    +M      
Sbjct: 15  DVYDDAFTPRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKE 74

Query: 71  AFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            F K A I G V  +G  H HG+ S  ++   +A  +   YPL+ GQGNFG+     AAA
Sbjct: 75  KFHKLASIAGGVADLG-YH-HGEGSAQEAGALMANTWNNNYPLLDGQGNFGSRLVQKAAA 132

Query: 129 YRYTEARM-TQVAELILQGVDEDAVDFRDTYNEEDSEP--VVFPSKFPNLLANGTSGIAV 185
            RY  AR+ +  A++      +D  ++   + + + +P     P   P +L NG SGIA 
Sbjct: 133 SRYIFARIGSNFAKVY-----KDT-EYAPVHADVEHKPPAFYLP-IIPTVLLNGVSGIAT 185

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT+I  H+   + +A L ++    ++  K    +  P+F              E   +
Sbjct: 186 GYATNILPHSFDSVKKAVLQVLQEKRVTKPK----VAYPEFRG------------EVVEI 229

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             G + +R  +           + +TEIPY+  +   + KI + +  K     +D  DE+
Sbjct: 230 EPGSYEIRGTYKFT----SRTQMHITEIPYKYDRETYVAKILDPLEDKGYITYDDDCDEN 285

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               ++    K   L  +   +   ++ D       + N+  +    ++   +  ++   
Sbjct: 286 GFGFKVK-IRKEYELPTEENKKHEKIMKDFGLIERRSQNLTVINEKGKLKVYEDAVELIR 344

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILK----GLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
                            I    E  K            ID ++ I     K     ++  
Sbjct: 345 DFVEVRKTFVQKRIDGKIIETEEAFKLALAKATFIKDVIDGVVVIQGKTRKVLTEELASN 404

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
            +     D ++ + +  +   E  ++  E      E     
Sbjct: 405 KVYGEYADKLVAMNIFHITSDEAKKLALEAKAKKEEHRYWK 445


>gi|11761974|gb|AAG40270.1|AF303649_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 50/106 (47%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPH D + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHCDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           TE+R ++ AEL+L  + +  VD+   ++    EP + P++ PN+L 
Sbjct: 61  TESRGSKYAELLLSQLGQGTVDWVPNFDGTLQEPKMLPARMPNILL 106


>gi|124108721|gb|ABM90937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 93


>gi|332258450|ref|XP_003278314.1| PREDICTED: DNA topoisomerase 2-alpha [Nomascus leucogenys]
          Length = 906

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 12/202 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++    + +  + ++ S   ER+IP + DG KP  R+++    +          K A++ 
Sbjct: 693 LTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 748

Query: 80  GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
           G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 749 GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 807

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
             ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G +  IP+
Sbjct: 808 TMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 866

Query: 194 HNVQEICEAALALIDNPEISIE 215
            +V+EI      L+D  E    
Sbjct: 867 FDVREIVNNIRRLMDGEEPLPM 888


>gi|325191142|emb|CCA25924.1| DNA topoisomerase putative [Albugo laibachii Nc14]
          Length = 1141

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 80/498 (16%), Positives = 167/498 (33%), Gaps = 31/498 (6%)

Query: 21   SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            S +  + +  + ++ +    R+IP   DG K   R+++ A  +  L       K A++ G
Sbjct: 654  SYKDFVNQELIQFSHADNT-RSIPSAIDGLKTSQRKVLFACLKRKLFQE---MKVAQLAG 709

Query: 81   EVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEA 134
                    H HG+ S++ ++V +AQ +       L+   G FG     G  AA+ RY   
Sbjct: 710  YCSEHTAYH-HGEASLHSTIVNMAQDYVGSNNITLLYPSGQFGTRLQGGKDAASPRYIFT 768

Query: 135  RMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            ++ +   LI    D    D    Y   +    EP  +    P LL NG+ GI  G +T I
Sbjct: 769  KLNKHTRLIYPEED----DALLNYNDDDGISVEPQYYVPIIPMLLINGSEGIGTGWSTYI 824

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P+HN  E+ +  L L+D+       +    + P F      +E    +      G     
Sbjct: 825  PNHNPIEVIDRMLHLLDSSNSRDHGVPPASLLPWFRGFRGSIE-AAGLQTYTTQGTIRHL 883

Query: 252  VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-----IPLLEDIRDESA 306
                  + E+  G W     +  +   + +LI    E    +           D      
Sbjct: 884  NPTTLEILELPIGKWIDDYKKTLWDFLQKKLIRSFTEHHSEEHVCFRIQLSRADSTFFLD 943

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                 ++         +      F  +    RF  + +V+      ++   +   +  + 
Sbjct: 944  MSPIELVRFFKLESKLNTNNMHAFDPNYTLQRFSSSDDVIKAFLPVRLDLYNRRKEYLVK 1003

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             ++  +    +            L+ +L   +   ++ A++ ++             + N
Sbjct: 1004 KQQCDVLELQNRVRFIAQVSAGDLQCILTRKMTKHQVAAVLDSQGYTPEQEFRYDEKSTN 1063

Query: 427  QV-----DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
                   D +LN+ + S    +  +++ E        E       + ++ W +    +R 
Sbjct: 1064 DNPASDFDYLLNMSMWSFTLDKANRLEKEHLER--LTELRKLQKTTPEEMWRRELLTLRG 1121

Query: 482  VKEIFSKSTDLGRRRTTF 499
                         + ++ 
Sbjct: 1122 KLVENGGYQPNDSKMSSL 1139


>gi|124108691|gb|ABM90922.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108695|gb|ABM90924.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108719|gb|ABM90936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108731|gb|ABM90942.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|124108729|gb|ABM90941.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/92 (57%), Positives = 73/92 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+ G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVGGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|224007445|ref|XP_002292682.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971544|gb|EED89878.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1230

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 144/390 (36%), Gaps = 37/390 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            V+    +    + ++      R+IP + DGFKP  R++++A  +  L       K A++ 
Sbjct: 699  VNYSEFINRELVLFSQYDNV-RSIPHIMDGFKPSQRKVLYACFKKKLKAE---IKVAQLA 754

Query: 80   GEVIG---KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYT 132
            G  IG     H HGD S+  +++ +AQ +       L+   G FG     G   A+ RY 
Sbjct: 755  GY-IGEHSAYH-HGDMSLNGTIIGMAQSYCGSNNLNLLYPSGQFGTRRMGGKDHASARYI 812

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
              R+ ++A  I    D+  +++    +    EP  +    P +L NG+ GI  G +++I 
Sbjct: 813  FTRLEKIARAIFHPDDDALLNY-LNDDGLSIEPEYYMPVIPMVLVNGSDGIGTGWSSTIQ 871

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +H+ +E+      +I+  E  +         P F      + +     E      G + V
Sbjct: 872  NHDPREVIANIKKMINGEEPELMH-------PHFAGYTGEITAESGSRE------GSYIV 918

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRL---IEKIAELIIAKRIPLLEDIRDESAEDV 309
              +        G   +++TE+P           +E +          + +   + +   V
Sbjct: 919  EGKIE----RTGDTTLLITELPIGKWTQDYKGFLEGLMIGTDKSPSEISDFKENHTDTTV 974

Query: 310  RIVLFPKNRSLDPD-LLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGILKEWLA 366
               +     ++D        +     + T        L      + +      IL+ +  
Sbjct: 975  SFTVTASKDAIDKFEKEKGGLVGKFKLSTTISTKNMTLFDTNGKIHKYKASVDILRTFFH 1034

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
            HR E   +R    ++ + R +++       
Sbjct: 1035 HRLEYYVKRKDMLLEKMRRELKVYDNKARF 1064


>gi|124108723|gb|ABM90938.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108767|gb|ABM90960.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|321268224|gb|ADW78920.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 101

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 76/99 (76%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           E I+  ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|310831315|ref|YP_003969958.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
            virus BV-PW1]
 gi|309386499|gb|ADO67359.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
            virus BV-PW1]
          Length = 1488

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 86/476 (18%), Positives = 178/476 (37%), Gaps = 52/476 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + N  +  N + + +   + +  + ++     +R+IP L DGFKP  R+I +  +  GL+
Sbjct: 1027 DKNLTINSNDRQIPVPDFINKDLIHFSNDD-TQRSIPSLVDGFKPSQRKIFYGANLRGLE 1085

Query: 68   FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++ G V  +   H HG+ S+  +++ +AQ F       L+  +G FG+   
Sbjct: 1086 KDQ--VKVAQLAGFVSDRVAYH-HGEASLMGAIIGMAQNFVGSNNVNLLEPKGQFGSRVM 1142

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   ++ +VA LI +  D   +++    +    EP  +    P +L NG +
Sbjct: 1143 GGKDSASPRYIWTKLEKVAGLIFRKEDNPILNYI-NDDGLMVEPEFYLPIIPMILVNGAT 1201

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP ++ QE+ E    L              I G  +          E  ++
Sbjct: 1202 GIGTGFSTSIPCYHPQELIEVLKKL--------------IKGEKYKKIHPYYHKFEGKLK 1247

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
              +L    ++V   + +++       IVV E+P     +   + + +++         + 
Sbjct: 1248 --KLDTTSYQVSGTYHIDKKNN----IVVEELPVGEWTTNYKQFLEKML--DTDTNFTNY 1299

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
             + S ++  +          P  L E +    + +            G + +   +D I+
Sbjct: 1300 DNNSTDEKIL--ITLKFKNIPTKLDEKL--KMNKKINLTNLHAYTEKGHIQKFKNIDEII 1355

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
                      L    + +   ++     +  +      I EII      +  K       
Sbjct: 1356 ---NNFYYVRLEGYYNRKKYLLEIYKHQMDIMKYKVKFIKEIINKTLIINNKKKLIIEQD 1412

Query: 416  ------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                    + +    E   D +L + L SL K +  +++ +          + +  
Sbjct: 1413 LETKKYPKMGKNLKDEINYDYLLGMNLYSLTKEKIEELEKQKIEKEEIYTNLKNKT 1468


>gi|215536135|gb|ACJ68515.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 51/95 (53%), Positives = 71/95 (74%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDFAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
           ++A  ++  ++++ VDF D Y+  +  P V P+K 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKI 95


>gi|324500526|gb|ADY40245.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1388

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 159/398 (39%), Gaps = 37/398 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++ +++S +  + +  + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 739  LYDKDTRSISFKDFVNKELVLFSNAD-NERSIPSLVDGLKPGQRKVLFTCFK---RADKK 794

Query: 72   FKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V  +   H HG+QS+  ++V LAQ +       L+   G FG     G  
Sbjct: 795  EVKVAQLAGAVGEMSAYH-HGEQSLMSTIVNLAQDYVGSNNINLLLPIGQFGTRLQGGKD 853

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            +A+ RY   ++  V + +   VD++ + F      +  EP  +    P +L NG  GI  
Sbjct: 854  SASPRYIFTQLNPVTKALFPSVDDNVLRFLF-EENQRIEPEWYCPIIPTVLVNGAEGIGT 912

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
              +T +P++N +EI +    LI   +               P        R +I +    
Sbjct: 913  AWSTKVPNYNPREIVDNIRRLIRGEDPK-------------PMVPWFKNFRGTIEQL--- 956

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---IIAKRIPLLEDIR 302
                F       +         + +TE+P +V      E + E       K+  L++D +
Sbjct: 957  DDQRFACSGEIAILRDDT----LEITELPIRVWTQNYKESVLEPLLEGSDKQPALIQDFK 1012

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGI 360
            +   +     +   +     D  ME +  +  ++T    +  VL    G + +   ++ I
Sbjct: 1013 EYHTDTTVRFVIKMSAQKLRDAEMEGLHKVFKLQTAINTSSMVLFDAAGCLRKFRNVEEI 1072

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             KE+   R++    R +F+   +  + E L       L
Sbjct: 1073 CKEFFETRKKKYIERKAFQEGMLRAQSERLSNQARFIL 1110


>gi|4566386|gb|AAD23327.1| DNA gyrase subunit A [Streptococcus oralis]
          Length = 97

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 51/96 (53%), Positives = 73/96 (76%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 96


>gi|321457974|gb|EFX69050.1| hypothetical protein DAPPUDRAFT_329527 [Daphnia pulex]
          Length = 1572

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 143/386 (37%), Gaps = 39/386 (10%)

Query: 12   LVEENVKAVSLRFALEERYLAYA-LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L E++ K VS R  + +  + ++ +    ER+IP L DGFKP  R+++    +       
Sbjct: 700  LYEKDTKRVSYRDFVNKELVLFSNMD--NERSIPSLMDGFKPGQRKVLFTCIKRN---DK 754

Query: 71   AFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
               K A++ G V      H HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 755  KEIKVAQLAGSVAEHSAYH-HGEASLMGTIIGLAQDFVGSNNINLLLPNGQFGTRLQGGK 813

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY    M+++  +I    D+  +  +   + +  EP  +    P +L NGT GI 
Sbjct: 814  DAASPRYIFTLMSKLTRIIFHPHDDPLLKHQMD-DNQRIEPEYYAPIIPMILVNGTDGIG 872

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G  T I ++N +E+      ++D  E                      +     +E  R
Sbjct: 873  TGWMTKILNYNPREVVANVKRMLDGEEPIPMDP--------------WFKGYRGTIE--R 916

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE---KIAELIIAKRIPLLEDI 301
            + R  + +     V         + +TE+P +V      E   +       K  PL+ D 
Sbjct: 917  IDRHRYAISGELAVL----SGTEMEITELPLRVWTQNYKESVMETLLHGSEKIPPLITDY 972

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            ++   +     +   +         E +     ++T   L   VL        + +   +
Sbjct: 973  KEYHTDTTVRFIVTMSEEKMQQAEAEGLHKAFKLQTTHSLTSMVLYDSNG--CLKMYDTV 1030

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++ L     V       R   +   +
Sbjct: 1031 EDILKEFFTVRLGYYGKRKDYLSGVL 1056


>gi|47226022|emb|CAG04396.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1345

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 67/334 (20%), Positives = 128/334 (38%), Gaps = 35/334 (10%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            +S    + +  + ++ S   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 732  LSYNDFVNKELVLFSNSD-NERSIPCLVDGLKPGQRKVLFCCFKRN---DKREVKVAQLA 787

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  ++V LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 788  GSVAEMSAYH-HGEVSLMMTIVGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIF 846

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIP 192
              ++ +A L+   VD++ + +   Y++    EP  +    P +L NG  GI  G A+ IP
Sbjct: 847  TMLSSLARLVFPPVDDNLLKY--NYDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWASKIP 904

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV--ESYRLGRGGF 250
            +++++EI      ++   E            P  P       + E ++  +    G    
Sbjct: 905  NYDIREIVNNIHRMLSGDEPL----------PMLPNYKGFKGTIEQVMNNQYMNSGEVAI 954

Query: 251  RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
                   + E+   +W         Q  K  ++E +      K  PL+ D ++   +   
Sbjct: 955  IDSTTIEISELPVKAW--------TQTYKENVLEPMLN-GTEKVPPLITDFKEYHTDTTV 1005

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
              +   +     +        +  ++     N  
Sbjct: 1006 RFVVRMSEEKLREAEAAGFHKVFKLQNPLTCNSM 1039


>gi|324500558|gb|ADY40259.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1586

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 159/398 (39%), Gaps = 37/398 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++ +++S +  + +  + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 739  LYDKDTRSISFKDFVNKELVLFSNAD-NERSIPSLVDGLKPGQRKVLFTCFK---RADKK 794

Query: 72   FKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V  +   H HG+QS+  ++V LAQ +       L+   G FG     G  
Sbjct: 795  EVKVAQLAGAVGEMSAYH-HGEQSLMSTIVNLAQDYVGSNNINLLLPIGQFGTRLQGGKD 853

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            +A+ RY   ++  V + +   VD++ + F      +  EP  +    P +L NG  GI  
Sbjct: 854  SASPRYIFTQLNPVTKALFPSVDDNVLRFLF-EENQRIEPEWYCPIIPTVLVNGAEGIGT 912

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
              +T +P++N +EI +    LI   +               P        R +I +    
Sbjct: 913  AWSTKVPNYNPREIVDNIRRLIRGEDPK-------------PMVPWFKNFRGTIEQL--- 956

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---IIAKRIPLLEDIR 302
                F       +         + +TE+P +V      E + E       K+  L++D +
Sbjct: 957  DDQRFACSGEIAILRDDT----LEITELPIRVWTQNYKESVLEPLLEGSDKQPALIQDFK 1012

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGI 360
            +   +     +   +     D  ME +  +  ++T    +  VL    G + +   ++ I
Sbjct: 1013 EYHTDTTVRFVIKMSAQKLRDAEMEGLHKVFKLQTAINTSSMVLFDAAGCLRKFRNVEEI 1072

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             KE+   R++    R +F+   +  + E L       L
Sbjct: 1073 CKEFFETRKKKYIERKAFQEGMLRAQSERLSNQARFIL 1110


>gi|195438268|ref|XP_002067059.1| GK24224 [Drosophila willistoni]
 gi|194163144|gb|EDW78045.1| GK24224 [Drosophila willistoni]
          Length = 1453

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 86/469 (18%), Positives = 166/469 (35%), Gaps = 33/469 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++    +    + ++ S   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 676  ITYSDFINLELVLFSNSD-NERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVKVAQLS 731

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  ++V LAQ +       L+  +G FG     G   A+ RY  
Sbjct: 732  GSVAEMSAYH-HGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARYIF 790

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              M+ +  LI   +D+  +D++ T + +  EP+ +    P +L NG  GI  G +T I +
Sbjct: 791  TLMSPLTRLIYHPLDDPLLDYQ-TDDGQRIEPLWYLPIIPMVLVNGAEGIGTGWSTKIAN 849

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            HN +EI      +I++ +             +F      V            G       
Sbjct: 850  HNPREIIRNLRRMINSEDPLPMHPW----YKNFRGRIEYVSDG----RYVHTGNIQMLPG 901

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
             R  + E+  G W         Q  K  ++E ++      +  + E     +   VR V+
Sbjct: 902  DRIEITELPLGVW--------TQTYKENVLEVLSNGTDKVKAVVSEYREYHTDTTVRFVV 953

Query: 314  FPKNRSLDP-DLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRRE 370
                   +         + +  + +    N          + +      ILKE+   R E
Sbjct: 954  SFAPGEFNRLRSEEGGFYRVFKLTSSLSTNQMHAFDQSNCLRRFPSSIDILKEFYTLRVE 1013

Query: 371  VLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
               RR  + +  +  + + L  +   I       ++   +        +  R    +   
Sbjct: 1014 YYCRRKDYLVGQLTAQADRLSDQARFILEKCEKTLVVENKQRKAMCEELAKRGYRPDPVK 1073

Query: 429  DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            +   +++L    K EE     E     A   K        ++ + ++  
Sbjct: 1074 EWQRSIKLEDAEKDEEEDEGEEAGEAAASGSKKVKKEVDPEKAFKKLTD 1122


>gi|310831536|ref|YP_003970179.1| putative DNA topoisomerase IIA [Cafeteria roenbergensis virus BV-PW1]
          Length = 1101

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 86/476 (18%), Positives = 178/476 (37%), Gaps = 52/476 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + N  +  N + + +   + +  + ++     +R+IP L DGFKP  R+I +  +  GL+
Sbjct: 640  DKNLTINSNDRQIPVPDFINKDLIHFSNDD-TQRSIPSLVDGFKPSQRKIFYGANLRGLE 698

Query: 68   FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A++ G V  +   H HG+ S+  +++ +AQ F       L+  +G FG+   
Sbjct: 699  KDQ--VKVAQLAGFVSDRVAYH-HGEASLMGAIIGMAQNFVGSNNVNLLEPKGQFGSRVM 755

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   ++ +VA LI +  D   +++    +    EP  +    P +L NG +
Sbjct: 756  GGKDSASPRYIWTKLEKVAGLIFRKEDNPILNYI-NDDGLMVEPEFYLPIIPMILVNGAT 814

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP ++ QE+ E    L              I G  +          E  ++
Sbjct: 815  GIGTGFSTSIPCYHPQELIEVLKKL--------------IKGEKYKKIHPYYHKFEGKLK 860

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
              +L    ++V   + +++       IVV E+P     +   + + +++         + 
Sbjct: 861  --KLDTTSYQVSGTYHIDKKNN----IVVEELPVGEWTTNYKQFLEKML--DTDTNFTNY 912

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
             + S ++  +          P  L E +    + +            G + +   +D I+
Sbjct: 913  DNNSTDEKIL--ITLKFKNIPTKLDEKL--KMNKKINLTNLHAYTEKGHIQKFKNIDEII 968

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------ 415
                      L    + +   ++     +  +      I EII      +  K       
Sbjct: 969  ---NNFYYVRLEGYYNRKKYLLEIYKHQMDIMKYKVKFIKEIINKTLIINNKKKLIIEQD 1025

Query: 416  ------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                    + +    E   D +L + L SL K +  +++ +          + +  
Sbjct: 1026 LETKKYPKMGKNLKDEINYDYLLGMNLYSLTKEKIEELEKQKIEKEEIYTNLKNKT 1081


>gi|313192264|emb|CBY05940.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 54/93 (58%), Positives = 74/93 (79%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           GDSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFV 94


>gi|224007473|ref|XP_002292696.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971558|gb|EED89892.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1172

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 152/397 (38%), Gaps = 39/397 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            V+    +    + ++      R+IP + DGFKP  R++++A  +  L       K A++ 
Sbjct: 671  VNHSEFVNRELVLFSQYDNV-RSIPHIMDGFKPSQRKVLYACFKKKLKAE---IKVAQLA 726

Query: 80   GEVIG---KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYT 132
            G  IG     H HGD S+  +++ +AQ +       L+   G FG     G   A+ RY 
Sbjct: 727  GY-IGEHSAYH-HGDMSLNGTIIGMAQSYCGSNNLNLLYPSGQFGTRRMGGKDHASARYI 784

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
              R+ ++A  I    D+  +++    +    EP  +    P +L NG+ GI  G +++I 
Sbjct: 785  FTRLEKIARAIFHPDDDALLNY-LNDDGLSIEPEYYMPVIPMVLVNGSDGIGTGWSSTIQ 843

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +H+ +E+      +I+  E  +         P F      + +     E      G + V
Sbjct: 844  NHDPREVIANIKKMINGEEPELMH-------PHFAGFTGEITAESGSRE------GSYIV 890

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRL---IEKIAELIIAKRIPLLEDIRDESAEDV 309
              +        G   +++TE+P           +E +          + +   + +   V
Sbjct: 891  EGKIE----RTGDTTLLITELPVGKWTQNYKAFLEGLMSGTDKDPSEISDFKENHTDTTV 946

Query: 310  RIVLFPKNRSLDPDLLME----SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               +     +++     +      F LS   +   +++     G++ +      IL+ + 
Sbjct: 947  SFTVTATEENINKFEYGKGGLLKKFKLSTTMSTANMHL-FSEDGKIVKYNGSVDILRTFF 1005

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
             HR E   +R    ++ + R +++          + +
Sbjct: 1006 HHRLEYYVKRKDMLLEKLRRELKVYDNKARFVEEVYK 1042


>gi|38640269|ref|NP_944225.1| gp52 topoisomerase II medium subunit [Aeromonas phage Aeh1]
 gi|33414954|gb|AAQ17997.1| gp52 topoisomerase II medium subunit [Aeromonas phage Aeh1]
          Length = 438

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 93/471 (19%), Positives = 190/471 (40%), Gaps = 40/471 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    +   +      +A+ TI+ERA+P + DG KPV R I+ ++ +   + G  FKK+
Sbjct: 2   QVIKRGISSLVNNEAKEFAMYTIEERALPSMVDGLKPVQRYILFSVLK---NAGREFKKN 58

Query: 76  ARIVGEVIGKL-HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           A + G VI +  + HG+ +  D+   +A  +   +P+I G+GNFG       AA RY   
Sbjct: 59  AAVAG-VISEYGYNHGEMAAMDAACLMASTWNNNFPVIQGRGNFGCRAVQEGAAARYIFC 117

Query: 135 RMTQVAELILQG---VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
              +  E + +    ++E         +         P   P +L NG SGIA G AT I
Sbjct: 118 SKHERFESMFKDMELLEESTA------DGSILPRYYLP-ILPTVLLNGVSGIATGFATKI 170

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             H+VQ + +    ++ + +    +    I  P F    + +E               ++
Sbjct: 171 MPHSVQSVAKCVEQVLKSGKCDEPE----IQFPKFFGKILSIEGET----------QSWK 216

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           V   + +     G   +++ E+P +  + + +  + +L+   +I       DES    R 
Sbjct: 217 VEGDYELS----GKTKLIINELPPKYDRLKYVTHLNKLVETDKIVGY----DESKMKDRE 268

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM-PLDGILKEWLAHRRE 370
             F      D D+  E+I  +  +       + V+      +       ++ +++  R  
Sbjct: 269 FCFKVTLKRDFDVSHENIIKVFKLSQNVSQYIRVIDQNGNLKPYDNASDLIVDFVNFRFN 328

Query: 371 VLFRRSSFRMQAIDRRVEILK-GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           VL +R    + A   +++  +  +    L + + I   R   K     ++ F   +   D
Sbjct: 329 VLQKRIDNAIIATREKLDFAQAKVDFIKLVLADKIVFNRQTRKQVIEQINAFDELKTYAD 388

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
            ++ + L  + + E  +++ ++  L  E +   +     + Q + I   ++
Sbjct: 389 QLVQMNLYHMTEDEVAKLEKQVAELQKEHDFWKTTTPRKQYQ-SDIKEFLK 438


>gi|311992987|ref|YP_004009854.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage
           Acj61]
 gi|295815276|gb|ADG36202.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage
           Acj61]
          Length = 465

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 98/479 (20%), Positives = 181/479 (37%), Gaps = 40/479 (8%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N S   + V+ N     L   +    LAYA+ T++ RAIP+L DGFKPV R +++   EM
Sbjct: 11  NFSTIKSGVQMNSVDRELDSIINNEALAYAIYTVENRAIPNLMDGFKPVQRFMVYRALEM 70

Query: 65  GLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
                  F K A + G V     H HG+ S  ++   +A  +   +P + GQGNFG+   
Sbjct: 71  AKGNHQKFHKLASVAGGVADAGYH-HGENSAQEAGALMANTWNNNFPFLDGQGNFGSRLV 129

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP--VVFPSKFPNLLANGTS 181
             AAA RY   R++     + + ++         + +E+  P     P   P +L NG  
Sbjct: 130 QEAAASRYIFCRISDNFRKVFKDIE-----IAPQHEDEEHLPPKHYLPV-IPTVLLNGVR 183

Query: 182 GIAVGMATSIPSHNVQEICEAAL-ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GIA G +TSI  H+++ + E    AL    +   E       G                 
Sbjct: 184 GIATGYSTSILPHSLESVIECTRLALQGKLDKEPEVAFPQFNG----------------- 226

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
              +   G + ++  +           + ++EIPY   +++ +EK+ + +  K     +D
Sbjct: 227 NIVKTEDGKYELQGVYKFT----SKTQMYISEIPYSFDRAKYVEKVLDPLEDKGFITYDD 282

Query: 301 IRDESAEDVRI-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
              +     ++          D  L+ E I     +  + P  + V+      ++     
Sbjct: 283 DCSKHGFGFKVKFRKDYKLPEDEGLMHEKIMRDFKLTEKVPQYIVVIDENG--KLNDKFE 340

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
              + + +  EV  +    R++ +  + E    L IA     + +       K K     
Sbjct: 341 NASDLIKYFVEVRKKYVKGRIEFMINKTERQFKLAIAKAMFIKTVNNGETVIKGKKKSEL 400

Query: 420 RFSLTENQ-----VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  L++        D +L + L  L   E  +++        E +         + + +
Sbjct: 401 KEELSKISVFQGFEDQLLAMNLYHLTDDEVVRLREAAHAAKTELDYWKETTVQIEYEKD 459


>gi|319411861|emb|CBQ73904.1| probable DNA topoisomerase II [Sporisorium reilianum]
          Length = 1513

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 152/387 (39%), Gaps = 38/387 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ N   +     + +  + ++++    R+IP + DG KP  R++ + M +   + 
Sbjct: 757  PGTYLDHNTDRIPYADFINKELILFSMADNL-RSIPSVVDGLKPGQRKVFYVMFDRKSNA 815

Query: 69   GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K   +VG V+G+   H HGD ++  ++V LAQ F       L+  +G FG     
Sbjct: 816  E---LKVNTLVGHVMGQAAYH-HGDAALVMTIVGLAQNFVGSNNVNLLEPRGQFGTRLLG 871

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  AA+ RY    + ++   +    D+  +D+ D    +  EP  +    P +L NG  G
Sbjct: 872  GKDAASGRYIFTALPKITRALFPQADDALLDYLDDD-GQKVEPHWYIPVVPQVLMNGAEG 930

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +TS+P++N  EI                 L     G D              VE 
Sbjct: 931  IGTGWSTSVPNYNPHEIVA--------------NLRRRTAGEDIIPMKPWFRGFTGDVEE 976

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI-----PL 297
            +  GR  F+V  R    +         +TE+P +   S   E + E I++          
Sbjct: 977  FSPGR--FKVSGRVTQIDEKT----WEITELPIRTWTSNYKESLEERIVSSEKAQATIKD 1030

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             ++   ES  +  + L  K ++   +   ++ F LS  +      +     G++ +    
Sbjct: 1031 YKEYHTESTVNFIVELTAKGQAEIAEKGADAFFKLS-CQISTTNMVLFDQDGKIKKYSSP 1089

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAID 384
            + IL+E+   R     +R    +  + 
Sbjct: 1090 EEILEEFYLLRLSYYQKRKEHLVDQLK 1116


>gi|70568834|dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]
          Length = 1469

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/404 (18%), Positives = 155/404 (38%), Gaps = 29/404 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T +++    +  R  + +  + ++++   +R+IP + DG KP  R+I+    +    
Sbjct: 673  EPGTFLDDRDSHIKYRDFVHKELILFSIAD-VQRSIPSMVDGLKPGQRKILFCSFKRNFV 731

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
              A   K A+  G V      H HG+QS+  +++ +AQ +       L+   G FG    
Sbjct: 732  REA---KVAQFSGYVSEHSAYH-HGEQSLAGTIIGMAQDYVGSNNINLLLPIGQFGTRGQ 787

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   +++ V   +    D+  +D+    + +  EP  +    P +L NG+ 
Sbjct: 788  GGKDHASARYVFTQLSPVTRFLFPKADDILLDY-LNEDGQSIEPTWYVPIIPMVLVNGSE 846

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++ +P++N  +I      L++  + + E +  +  G  F        ++E+   
Sbjct: 847  GIGTGWSSYVPNYNPVDIIANIRHLLN--DEATEPMHPWYKG--FLGSVEKTATKEAGAS 902

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR-LIEKIAELIIAKRIPLLED 300
                G           +EEV   + CI    I    Q  +  +E ++      + P +E 
Sbjct: 903  YTVSGI----------IEEVDDTTLCIKELPIRRWTQDYKEFLESVSAENDKSKDPFIEG 952

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLD 358
             RD S  ++   L             E +     + T        L   +  + +    +
Sbjct: 953  CRDYSGSELVNFLVGMKPEKLEAAKREGLLKKFKLTTSISTCNMHLFDSKGVIKKYDTPE 1012

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
             IL+E+   R E+  +R    +  ++  +            + E
Sbjct: 1013 QILEEFFYIRLELYEKRKKVLLDILEHDMLKCDNKYRFIRCVVE 1056


>gi|256083186|ref|XP_002577830.1| DNA topoisomerase II [Schistosoma mansoni]
 gi|238663163|emb|CAZ34068.1| DNA topoisomerase II, putative [Schistosoma mansoni]
          Length = 1599

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 147/419 (35%), Gaps = 53/419 (12%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDS 97
            ER+IP + DG KP  R+++    +  L       K A++ G V  +   H HG+QS+  +
Sbjct: 715  ERSIPSVVDGLKPGQRKVLFTCLKRNLI---REIKVAQLAGSVAELSAYH-HGEQSLMST 770

Query: 98   LVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            ++ LAQ F       L+   G FG     G  AA+ RY    +  +  LI    D    D
Sbjct: 771  IIGLAQNFVGSNNLNLLQPIGQFGTRLSGGKDAASPRYIFTALNSLTRLIFHLED----D 826

Query: 154  FRDTY---NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
                Y   + +  EP  +    P +L NG  GI  G AT I ++NV EI      ++D  
Sbjct: 827  PLLNYLYDDNQRIEPEWYAPIIPMVLVNGADGIGTGYATHILNYNVIEIINNLYRMLDGE 886

Query: 211  EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
            E               P       + E +      G   +       V +       + +
Sbjct: 887  EPHRM----------LPNFRGFTGTIEDL------GSNRYVCYGEVAVLDDDT----LEI 926

Query: 271  TEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
            TE+P +V      E + E ++     +   + D ++   +     +   +     +    
Sbjct: 927  TELPIRVWTQNYKESVLEPMLNGSEKVPACITDYKEYHTDVTVRFVIKMSPEKLREAEST 986

Query: 328  SIFMLSDMETRFPL-NMNVLSMGRVPQVMP--------LDGILKEWLAHRREVLFRRSSF 378
             +     ++T     +M         +  P           +   W   R+  L    S 
Sbjct: 987  GLHKFFKLQTVMSTGSMVCFDPLGCLKCYPNEIIIIREFYELRLTWYEKRKVYLEGVLSA 1046

Query: 379  RMQAIDRR----VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
              + ++ +    +E ++ +++      + +  +  E       V  +  + ++  A+  
Sbjct: 1047 EARKLENQARFVLEKIQSIMVIENKPKKELIRMLKEANYDSDPVKAWKESIDKAAALQE 1105


>gi|3786306|dbj|BAA33955.1| TopoisomeraseII [Candida glabrata]
          Length = 1406

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/403 (19%), Positives = 152/403 (37%), Gaps = 37/403 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +  + +   + +  + ++L+     +IP + DGFKP  R++++   +  L 
Sbjct: 656  EPGTVLDPTLNEIPISDFINKELILFSLADNVS-SIPSVLDGFKPGQRKVLYTCFKKNLT 714

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A +   V      H HG+Q++  +++ +AQ F        +   G FG    
Sbjct: 715  TEK---KVANLAPAVSDYTAYH-HGEQALVQTIIGMAQNFVGTNNIYFLKPNGAFGTRAT 770

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY    + ++A  +    D+    +    +E+  EP  +    P +L NG  
Sbjct: 771  GGKDAAAARYIYTELNKIARKVFHPADDPLFRYV-QEDEKTVEPEWYLPVVPMVLINGAE 829

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP  N  ++      L+++ E+  + +  +  G                +E
Sbjct: 830  GIGTGWSTSIPPFNPLDVVNNIRHLLNDEEM--DDMHPWFRG---------WTGTMEKIE 878

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
            S R     +R+  R        G   + +TE+P +   S + E   +      K  P ++
Sbjct: 879  SQR-----YRMYGRIE----QVGPNTLEITELPARTWTSTIKEHLLLGLGGSEKVKPWIK 929

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPL 357
            D+  E   +    +                +    + +   L   V     G++ +   +
Sbjct: 930  DME-EQHAETIKFIIKLTDEEMTKTRKLGFYERFKLISPISLQNMVAFDYRGKIKKYDHV 988

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
              ILK++   R E   +R  +    +    E L   +     I
Sbjct: 989  HEILKDFYEVRLEYYQKRKDYMTGRLQWEAEKLSFQVKFIKMI 1031


>gi|307180209|gb|EFN68242.1| DNA topoisomerase 2 [Camponotus floridanus]
          Length = 1502

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 93/549 (16%), Positives = 175/549 (31%), Gaps = 41/549 (7%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E++ + VS    +    + Y+      R+IP++ DGFKP  R+++    +        
Sbjct: 677  LYEKDTRTVSFSDFINVELVLYSNYDNV-RSIPNMIDGFKPGQRKVMFTCLKRN---DKR 732

Query: 72   FKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V      H HG+ S+  +++ LAQ F       L+   G FG     G  
Sbjct: 733  EVKVAQLAGSVAEHSAYH-HGETSLMATIINLAQNFVGSNNINLLQPIGQFGTRLTGGKD 791

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA+ RY    ++ +A  I    D+  +      + +  EPV +    P +L NG  GI  
Sbjct: 792  AASPRYIFTMLSPLARYIFHKHDDALLKHEYD-DNQKIEPVFYVPVIPMILVNGADGIGT 850

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
            G  T IP++N +EI E               L   + G D        ++ + +VES   
Sbjct: 851  GWMTKIPNYNPREIIE--------------NLHRMMDGADPKPMSPYYKNFKGVVESCGD 896

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---LIIAKRIPLLEDIR 302
             R  + +     V     G   + +TE+P         E + E       K   ++ D +
Sbjct: 897  YR--YVISGEISVI----GPDKLEITELPIGTWTQTYKETVLEPMLHGSEKIPAIITDYK 950

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            + + +     +   NR    +L  E +     +++   +           Q +     + 
Sbjct: 951  EYNTDTAVHFIIILNRDKLLELEREGLHKAFKIQSTTTITSMCAFDEN--QCLNKYENVI 1008

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            + L    +V       R   ++  ++     L                 + K        
Sbjct: 1009 QILKVFYKVRLETYHKRKDYLEGILKAESAKLSNQARFILEKCDGTLVIENKKKKDMIAE 1068

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            L     D+   +  +  +  E+   +    +             +           +   
Sbjct: 1069 LVRRNYDSDPVMVWKLSQNREQVLEEVGEHDDENAPTATAMEKENFDYLLGMTMWTL--- 1125

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
                 K   L +R     E+ R    T      E     +   N+   +  K  +     
Sbjct: 1126 -TKEKKDDLLRQRDEKMAELKRLQVRTPISLWKEDLDNLLTELNKLEEKEQKEDNKTKQK 1184

Query: 543  LHFKEGDSL 551
                     
Sbjct: 1185 TKKPPSKFY 1193


>gi|65431631|gb|AAY42593.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 86

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/86 (56%), Positives = 61/86 (70%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++AM + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+ 
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYT 132
            RYPL+ GQGNFG+   D  AA RYT
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMRYT 86


>gi|145496633|ref|XP_001434307.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401431|emb|CAK66910.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1220

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/489 (15%), Positives = 173/489 (35%), Gaps = 36/489 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N +  V+   K +  +  + +  + ++++    R+IP L DG KP  R+++ A  +  L 
Sbjct: 628  NHDLYVDHTQKELGYQDFIHKELIHFSMADNI-RSIPSLMDGLKPGQRKVLFACFKRNL- 685

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K  ++ G +      H HGD S+  +++ +AQ F       L+  +G FG+   
Sbjct: 686  --KQEIKVVQLGGYIAEHSAYH-HGDISLVTTIIGMAQNFVGSNNINLLLPRGQFGSRAM 742

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY    + ++   I    D+  V + +  + E  EP  +    P  L NG  
Sbjct: 743  GGKDHASARYISTVLNKITRYIFPEQDDHVVKYIED-DGEMVEPEYYVPIIPMSLVNGAE 801

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSI ++N  E+ E              ++ + + G  F        + +  +E
Sbjct: 802  GIGTGWSTSIQNYNPVELVE--------------QIKKRLNGEQFDNLTPYYRNFDGNIE 847

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            +   G    +      + E    +  + + E+P +       E   +  I++    + D+
Sbjct: 848  TQPNGNSLVK-----GIIECNEETDIVTIKELPIKKWTKNYKE-WLDKEISQEGNPIMDL 901

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            R+   +                L     +            +      ++ +   +  IL
Sbjct: 902  REYHTKYKIHFEIQMTEGYVSQLKNPYEYFKLVTPFSNNNMVLFDGQNKIKKFESIAEIL 961

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRR---VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            +E+   R +   +R  + +  +DR    +      +      +EI      +      + 
Sbjct: 962  EEFYQVRLQFYQKRKDYLLSKLDREVQLLHNKSRFIKMV-ISEEIRLKNVKKADLVQQLD 1020

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
                   +Q+  + + ++++    +  +   + ++     +         +   NQ   +
Sbjct: 1021 KNQFTRFSQLITVNSTKMQAFGDSKNPKKNVDDNDTSEASDDEQVSKKKPENTENQQNNK 1080

Query: 479  IREVKEIFS 487
                   ++
Sbjct: 1081 TTLDISDYN 1089


>gi|46370594|gb|AAS90119.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1402

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 81/397 (20%), Positives = 162/397 (40%), Gaps = 33/397 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + N+ V+ N+K +  +  ++   + ++ +    R+IP L DG KP  R+I+ +  +  L 
Sbjct: 649  DPNSFVDYNIKQLRSKXFIDRELIHFSNADNL-RSIPSLCDGLKPGQRKILFSCFKRNLK 707

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A+++G V      H HG+QS+  +++ +AQ F       L+   G FG    
Sbjct: 708  SE---IKVAQLIGYVAEHSAYH-HGEQSLASTIIGMAQNFVGSNNINLMMPIGQFGTRNQ 763

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY    ++++  ++    D+  + + +  + +  EP  +    P  L NG+S
Sbjct: 764  GGKEHASARYIFTSLSKITRILFPEHDDHVLKYLED-DNQVVEPEWYMPIIPMCLVNGSS 822

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP++N + I E              +L  +  G          + +  I  
Sbjct: 823  GIGTGWSTDIPNYNHKGIVEQIRG--KLEGRPFTELHPWYKG---------FQGQIEINP 871

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS--RLIEKIAELIIAKRIPLLE 299
                 +GG+ V+ ++ ++EV      I +TE+P        +++     L   K  P +E
Sbjct: 872  -----KGGYIVKGQYEIDEVE---ETIKITELPVGKWTRDYKVVLIQELLSPPKGEPEIE 923

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DIR+    +                      +      +    +      ++ +      
Sbjct: 924  DIREYHTNNRVHFEVQAIPGRIQQWGDIEKKLKLSTTMQTTNIVMFNDKYKLKRYQSTVE 983

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
            I++E+ A R +   +R  + +  I R V+IL+  +  
Sbjct: 984  IMEEFYALRLKCYQKRKDYLVSKIQRDVDILQNKMKF 1020


>gi|261886134|ref|ZP_06010173.1| DNA gyrase subunit A [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 430

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/376 (15%), Positives = 123/376 (32%), Gaps = 41/376 (10%)

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +++F L + Q +AIL++RL  L  LE  ++ +EL  +L   EK+D++L S     N I  
Sbjct: 1   MAKFGLFKLQSNAILDMRLSKLPGLEREKLAAELKEILELIEKLDAILKSETLIGNIIRV 60

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K  F                           +       +           K   
Sbjct: 61  ELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGG 120

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
               A+   + D ++      + D ++ ++  G+ Y L    +        G+A+  LI 
Sbjct: 121 KGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLIS 180

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I        +D +  L   +  G       SE       G   + +   +++  
Sbjct: 181 LQADEKIKAIIPTTDFDESKSLAFFTKNGIVKRTNLSEFKNIRSIGVKAINLDDNDELVT 240

Query: 653 VVKVT----------------------------------GDHVAVVGENRKLLIFSIDQI 678
           VV                                     G  +  V +    + F+++++
Sbjct: 241 VVIANSEPDESYDDSFEDGEGVSNLQTISEDNSENSLESGKMLFAVTKKGMCIKFALNKV 300

Query: 679 PEMSR-GKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
            ++ R  +GV    +K+             +    +  + +   +        L  RGG 
Sbjct: 301 RQIGRVSRGVTAIRFKENLDEVVGAVVIENDSQEILSVSQKGIGKRTTADEYRLQSRGGK 360

Query: 737 GSLVPKGFPRSGKFLS 752
           G +  K  P++   + 
Sbjct: 361 GVICMKLTPKTKDLVG 376


>gi|124108725|gb|ABM90939.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 72/90 (80%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           A RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFVDN 90


>gi|328876909|gb|EGG25272.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1233

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 89/489 (18%), Positives = 187/489 (38%), Gaps = 40/489 (8%)

Query: 13   VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            V+ ++K +S    + +  + Y+ +    R+IP + DG KP  R+I++A  +  L      
Sbjct: 764  VDHSIKELSFDDFINKELIHYSWAA-NHRSIPSVMDGLKPGQRKILYAAFKRKLTSE--- 819

Query: 73   KKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSA 126
             K A+  G V      H HG+QS+  ++V++AQ F      PL++  G FG     GD +
Sbjct: 820  IKVAQFSGYVAEHTAYH-HGEQSLSSTIVKMAQDFVGSNNIPLLTSGGQFGTRLQGGDDS 878

Query: 127  AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            A+ RY   ++  +  LI   +D+D + + +    E  +P  +    P +L NG+ GI VG
Sbjct: 879  ASPRYIFTKLNSITRLIFNDLDDDLLKYLE-EEGEMIQPNYYVPILPMILVNGSDGIGVG 937

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
            M+ S+P ++  ++ +  L L++N +          + P +      +    + V      
Sbjct: 938  MSNSVPLYSPIDLIDYLLNLLNNQKQMK------ALVPWYRGFTGTIVRGSNAVNGSFKT 991

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G      R            +V++++P           + +L+    I    D   E++
Sbjct: 992  SGVITRVGRT-----------LVISDLPIGKWTVDYKVVLNDLVEKDFIKSYHDGNTENS 1040

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWL 365
                I           ++    +     + +    N+ +    G + +    + I+ E+ 
Sbjct: 1041 VSFTIHFTNDQLEEIDEMTDNELIDKFKLNSSLHSNLMLFDTNGNIKKYESTEEIIGEFF 1100

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI--------DEIIAIIRNEDKPKPVM 417
             +RR++   R       + ++++     +     I         +   +I  E       
Sbjct: 1101 QYRRKLYVDRKKMLQDRLKKQIDKFNVTIQFISLIASGKVKLGGKTKQLIIEELHKNKFK 1160

Query: 418  VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG--KQQWNQI 475
            ++     E   + + NL +  + + +   +   L     E   I S  +    K    Q+
Sbjct: 1161 LAPNQNQEEMFNYLFNLPILDMTQEKIDTLTQNLSKRTEEFNFIQSQESDQLWKTDLQQL 1220

Query: 476  ACEIREVKE 484
               + + K 
Sbjct: 1221 KDFLLKDKT 1229


>gi|19526749|gb|AAL89785.1|AF487420_1 DNA gyrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 92

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 73/91 (80%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           AA RYTE R+ ++A  ++  ++++ VDF DT
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEKETVDFVDT 91


>gi|124108739|gb|ABM90946.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 73/92 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  + ++ VDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLKKETVDFV 93


>gi|194879545|ref|XP_001974253.1| GG21630 [Drosophila erecta]
 gi|190657440|gb|EDV54653.1| GG21630 [Drosophila erecta]
          Length = 1446

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 83/453 (18%), Positives = 157/453 (34%), Gaps = 40/453 (8%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDS 97
            ER+IP L DG KP  R+++    +          K A++ G V  +   H HG+ S+  +
Sbjct: 692  ERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 747

Query: 98   LVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            +V LAQ F       L+  +G FG     G   A+ RY    M+ +  LI   +D+  +D
Sbjct: 748  IVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLD 807

Query: 154  FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
            ++   + +  EP  +    P +L NG  GI  G +T I +HN +EI      +I+  E  
Sbjct: 808  YQVD-DGQKIEPQWYLPIIPMVLVNGAEGIGTGWSTKISNHNPREIMSNLRKMINGEEPK 866

Query: 214  IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            +                   ++    +E    GR  +       +           +TE+
Sbjct: 867  VMHP--------------WYKNFTGRMEYVSDGR--YVQTGNIQILPGN----RAEITEL 906

Query: 274  PYQVQKSRLIEKIAELIIAKRIP---LLEDIRDESAEDVRIVLFPKNRSLDPDLLMES-- 328
            P  V      E + E +         ++ D R+   +     +          +  E   
Sbjct: 907  PVGVWTQNYKENVLEPLANGTEKVKAIISDYREYHTDTTVRFVISFAPGEFERIQAEDGG 966

Query: 329  IFMLSDMETRFPLNMNVLSMGRV--PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             + +  + T    N            +      ILKE+   RRE   RR  F +  +  +
Sbjct: 967  FYRVFKLTTTLSTNQMHAFDHNNCLRRFPTAIDILKEFYELRREYYARRKDFLVGQLTAQ 1026

Query: 387  VEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             + L  +   I      +++   +        ++ R    +   +    +++       E
Sbjct: 1027 ADRLSDQARFIVEKCDKKLVVENKQRKAMCDELLKRGYRPDPVKEWQRRIKMEDAEPANE 1086

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
               + E     A  +          + + ++  
Sbjct: 1087 EDDEEEEAAPSASSKVKKEKDVDPDKAFKKLTD 1119


>gi|83596418|gb|ABC25548.1| GyrA [Streptococcus pneumoniae]
          Length = 97

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/97 (53%), Positives = 77/97 (79%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTEARM+++A
Sbjct: 1   DVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIA 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             +L+ ++++ VDF D Y+  + EP+V P++FPNLL 
Sbjct: 61  LEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLV 97


>gi|124108727|gb|ABM90940.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 88

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/88 (59%), Positives = 71/88 (80%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFR 155
           A RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFV 88


>gi|22094462|gb|AAM91910.1|AF498910_1 gyrase A [Salmonella enterica subsp. enterica serovar Derby]
          Length = 101

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 76/102 (74%), Gaps = 3/102 (2%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDA--VDFRDTYNE 160
           IDGDSAAA RYTE R+ ++A  ++  ++++   + +   Y+ 
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKERRWISWIP-YDG 101


>gi|226327145|ref|ZP_03802663.1| hypothetical protein PROPEN_01010 [Proteus penneri ATCC 35198]
 gi|225204363|gb|EEG86717.1| hypothetical protein PROPEN_01010 [Proteus penneri ATCC 35198]
          Length = 164

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/146 (42%), Positives = 98/146 (67%), Gaps = 1/146 (0%)

Query: 101 LAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           +AQPF  RYPLI GQGN+G  D   S AA RYTE+R+++ ++ +L  +    VD+   ++
Sbjct: 1   MAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESRLSKYSQTLLSELGHGTVDWIPNFD 60

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
               EP + P++ PN++ NGT+GIAVGMAT IP HN +EI +A + L+DNP+  +  +++
Sbjct: 61  GTMQEPKMLPARLPNIVLNGTTGIAVGMATDIPPHNAREIGQALVMLLDNPDAGLSDVMQ 120

Query: 220 YIIGPDFPTGGIIVESRESIVESYRL 245
           Y+ GPD+PT   I+ +++ I +S + 
Sbjct: 121 YVQGPDYPTEAEIITAQDDIKKSIKR 146


>gi|17932929|emb|CAC84126.1| ParC topoisomerase IV [Stenotrophomonas maltophilia]
          Length = 91

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 70/91 (76%), Gaps = 1/91 (1%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           + DG KPV RRII++MSE+GL+  +  KKSAR VG+VIGK HPHGD + Y++LV +AQPF
Sbjct: 1   IGDGLKPVQRRIIYSMSELGLNAASKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDG-DSAAAYRYTEAR 135
             RYPLI GQGNFG+ D   S AA RYTE+R
Sbjct: 61  SYRYPLIEGQGNFGSSDDPKSFAAMRYTESR 91


>gi|170592146|ref|XP_001900830.1| Probable DNA topoisomerase II [Brugia malayi]
 gi|158591697|gb|EDP30301.1| Probable DNA topoisomerase II, putative [Brugia malayi]
          Length = 1570

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 87/398 (21%), Positives = 162/398 (40%), Gaps = 37/398 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++ +AVS +  + +  + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 735  LYDKDTRAVSFKDFVNKELVLFSNAD-NERSIPSLVDGLKPGQRKVLFTCFK---RADKK 790

Query: 72   FKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V  +   H HG+ S+  ++V LAQ +       L+   G FG     G  
Sbjct: 791  EVKVAQLAGAVGEMSAYH-HGEASLMSTIVNLAQDYVGSNNINLLLPIGQFGTRLQGGKD 849

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            +A+ RY   ++  V   +   VDE+ + F      +  EP  +    P +L NG  GI  
Sbjct: 850  SASPRYIFTQLNPVTRALFPAVDENVLRFLF-EENQRIEPEWYCPIIPTVLVNGAEGIGT 908

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
              +T IP++N +EI +    LI   E               P        R +I +    
Sbjct: 909  AWSTKIPNYNPREIVDNMRRLIRGEEPK-------------PLIPWFKNFRGTIEKL--- 952

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIR 302
                 R      +  +  G   I +TE+P +       E + E +     K+ PL++D +
Sbjct: 953  --DESRYICSGEIALL--GDDTIEITELPIRTWTQNYKESVLESMLEGSDKQPPLIQDFK 1008

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGI 360
            +   +     +   N +   +  ME +  +  ++T   ++  VL    G + +   ++ I
Sbjct: 1009 EYHTDTTVKFVVKMNPAKLREAKMEGLHKIFKLQTAINISSMVLFDPLGCLRRFSNVEEI 1068

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             KE+   R++    R +F+   +  + E L       L
Sbjct: 1069 CKEFFEIRKKKYIERKAFQEGMLRAQSERLSNQARFIL 1106


>gi|115379153|ref|ZP_01466275.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
 gi|115363848|gb|EAU62961.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
          Length = 133

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/99 (51%), Positives = 68/99 (68%), Gaps = 1/99 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFK 73
           EN +   L      RYL YALS I  RA+PD+RDG KPV RR+++ M  +  L   A ++
Sbjct: 35  ENFQPAPLAEEARRRYLNYALSVITSRALPDVRDGLKPVQRRVLYGMYHDHRLTQDAKYQ 94

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           KSA++VG ++G+ HPHGD S+YD+LVRLAQ F  RYPL+
Sbjct: 95  KSAKVVGTIMGQYHPHGDASIYDALVRLAQDFSLRYPLV 133


>gi|32481444|gb|AAP84068.1| gyrase [Enterococcus casseliflavus]
          Length = 83

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARIVG+V+GK HPHGD ++Y
Sbjct: 1   SVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNF 118
           +S+VR+AQPF  RY L+ G GNF
Sbjct: 61  ESMVRMAQPFSYRYMLVDGHGNF 83


>gi|65431749|gb|AAY42594.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 86

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/86 (55%), Positives = 61/86 (70%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++AM + G     +  KSAR V E +G  HPHGD S+Y++LVR+AQP+ 
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYNTLVRMAQPWS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYT 132
            RYPL+ GQGNFG+   D  AA RYT
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMRYT 86


>gi|195484462|ref|XP_002090705.1| GE12650 [Drosophila yakuba]
 gi|194176806|gb|EDW90417.1| GE12650 [Drosophila yakuba]
          Length = 1441

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 157/453 (34%), Gaps = 40/453 (8%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDS 97
            ER+IP L DG KP  R+++    +          K A++ G V  +   H HG+ S+  +
Sbjct: 692  ERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 747

Query: 98   LVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            +V LAQ F       L+  +G FG     G   A+ RY    M+ +  LI   +D+  +D
Sbjct: 748  IVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLD 807

Query: 154  FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
            ++   + +  EP  +    P +L NG  GI  G +T I +HN +EI      +I+  E  
Sbjct: 808  YQVD-DGQKIEPQWYLPIIPMVLVNGAEGIGTGWSTKIANHNPREIMNNLRKMINGEEPK 866

Query: 214  IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            +                   ++    +E    GR  +       +         + +TE+
Sbjct: 867  VMHP--------------WYKNFTGRMEYVSDGR--YVQTGNIQILPGN----RVEITEL 906

Query: 274  PYQVQKSRLIEKIAELIIAKRIP---LLEDIRDESAEDVRIVLFPKNRSLDPDLLMES-- 328
            P  V      E + E +         ++ D R+   +     +          +  E   
Sbjct: 907  PVGVWTQNYKENVLEPLANGTEKVKAIVSDYREYHTDTTVRFVITFATGEFERIQAEEGG 966

Query: 329  IFMLSDMETRFPLNMNVLSMGRV--PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
               +  + T    N            +      ILKE+   RRE   RR  F +  +  +
Sbjct: 967  FHRVFKLTTTLSTNQMHAFDQNNCLRRFPTAVDILKEFYQLRREYYARRKDFLVGQLTAQ 1026

Query: 387  VEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             + L  +   I      +++   +        ++ R    +   +    +++       E
Sbjct: 1027 ADRLSDQARFILEKCEKKLVVENKQRKAMCDELLKRGYRPDPVKEWQRRIKMEDAEPANE 1086

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
               + E        +         ++ + ++  
Sbjct: 1087 EDDEEEEAAPSVSSKVKKEKEVDPEKAFKKLTD 1119


>gi|24020926|gb|AAN40858.1| ParC [Streptococcus mitis]
 gi|24020932|gb|AAN40861.1| ParC [Streptococcus mitis]
          Length = 104

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 43/104 (41%), Positives = 73/104 (70%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   ++
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 104


>gi|313192270|emb|CBY05943.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/97 (55%), Positives = 74/97 (76%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+V GK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 2   RIGHDWNKAYKKSARVVGDVFGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           GDSAAA RYTE R+ ++A  ++  + ++ VDF   Y+
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLKKETVDFLGYYD 98


>gi|145522376|ref|XP_001447032.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414532|emb|CAK79635.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1272

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/399 (18%), Positives = 151/399 (37%), Gaps = 32/399 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N +  V+     +     + +  + ++++    R+IP L DG KP  R+++ A  +  L 
Sbjct: 641  NHDLYVDHTKSELGYSEFIHKELIHFSMADNI-RSIPSLMDGLKPGQRKVLFACFKRNL- 698

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K  ++ G +      H HGD S+  +++ +AQ F       L+  +G FG+   
Sbjct: 699  --KQEIKVVQLGGYIAEHSAYH-HGDLSLVSTIIGMAQNFVGSNNINLLLPKGQFGSRAM 755

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY    + ++   I    D+  + + +  + +  EP  +    P  L NG  
Sbjct: 756  GGKDHASARYISTALNKITRYIFPEQDDHLLKYLED-DGQMVEPEYYVPIIPMSLVNGAE 814

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSI ++N              P   ++++   + G  F        + + I+E
Sbjct: 815  GIGTGWSTSIQNYN--------------PIDLVQQIKNRLNGEQFQPMAPFYRNFDGIIE 860

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            +   G     ++      E    +  + + E+P +       E   +  +A+    + D+
Sbjct: 861  NLPNG--NCVIKGLIDCNEA---TDIVTIRELPIKKWTRNYKE-WLDKEMAEEGSQIVDL 914

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            R+   +               DL     +            +   S  ++ +   +  I+
Sbjct: 915  REYHTKYKIHFEIQMVDGFVQDLKNPLEYFKLSSPASCSNMVLFDSNSKIKKYECVQDIM 974

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            +E+   R E   +R  + +  +DR V++L   L     +
Sbjct: 975  EEFYQVRLEFYHKRKDYLISKLDREVQLLDNKLKFIKMV 1013


>gi|124108763|gb|ABM90958.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108765|gb|ABM90959.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 72/90 (80%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           A RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFVDN 90


>gi|24020928|gb|AAN40859.1| ParC [Streptococcus mitis]
          Length = 104

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 43/104 (41%), Positives = 73/104 (70%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   ++
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 104


>gi|124108745|gb|ABM90949.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 73/92 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   IGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  + ++ VDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLKKETVDFV 92


>gi|215536133|gb|ACJ68514.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 94

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/94 (54%), Positives = 71/94 (75%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDYAVYFTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           ++A  ++  ++++ VDF D Y+  +  P V P+K
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTK 94


>gi|221487518|gb|EEE25750.1| DNA topoisomerase II, putative [Toxoplasma gondii GT1]
          Length = 1688

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 146/386 (37%), Gaps = 31/386 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T V+ N  ++S    + +  + ++     ER+IP L DG+KP  R+++ A  +  +  
Sbjct: 764  EGTFVDHNASSLSYSDFVNKELILFSRYD-TERSIPQLVDGWKPGQRKVLFACIKKNMKH 822

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++ G V      H HG+ S+  ++V +AQ F        +   G FG+    
Sbjct: 823  E---LKVAQLAGYVSEVSAYH-HGEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEG 878

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  A+A RY   R+     L+    D+  +++      +  EP ++    P +L NG+ G
Sbjct: 879  GKDASAARYIFTRLAFYTRLVFHEADDPILEYEY-EEGQRIEPKMYVPVIPTVLINGSEG 937

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G ++ +P++N +++ E               L  YI G +              +E 
Sbjct: 938  IGTGWSSFVPNYNPRDVIE--------------NLRRYIDGEEMQRMTPWYRGFRGRIEE 983

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
               G G   +       E       + +            +E+       KR  L+ D R
Sbjct: 984  NAAGTGFETIGLVRRCGEDSYEITELPIKRWTQDY--KEWLEE-NLPTAEKRDTLIADYR 1040

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPLDGI 360
            D S+ +                  E +     +++   +    L    GRV +      I
Sbjct: 1041 DCSSHEEIHFTVKVGEERVERPEREGLEKYFKLKSSLSITNLTLFDPHGRVQRYANELEI 1100

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRR 386
            +KE+   R E   RR ++ +  +++ 
Sbjct: 1101 IKEFAPIRLEFYHRRKAYCLAMLEKA 1126


>gi|4566396|gb|AAD23332.1| DNA gyrase subunit A [Streptococcus mitis]
          Length = 97

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/96 (51%), Positives = 71/96 (73%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AA  
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAADQ 60

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RYTEARM+++A  +L+ ++++ VDF   Y+  + EP
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVANYDANEREP 96


>gi|289805577|ref|ZP_06536206.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 203

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 6/170 (3%)

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            I  L+ L  N+ I        Y+    + + ++ G       +E       G   + ++
Sbjct: 27  PIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLN 86

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             +++  V   +G D V +     K++ F  D +  M R   GVR            +  
Sbjct: 87  DGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLII 146

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              EG   +      Y +           R   G +  K   R+G  + +
Sbjct: 147 PRGEGA-ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGA 195


>gi|227873176|ref|ZP_03991467.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
 gi|227841007|gb|EEJ51346.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
          Length = 409

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 102/318 (32%), Gaps = 9/318 (2%)

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           +E  ++++E  +LLA+      +L   ++    I  E+  + + + +            +
Sbjct: 1   MERERLENEYQDLLAKIAYYKEILGDERRLLAVIKEELDVIADKYGEDRKTSFSYDDILD 60

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
            +    A     +       +   +    R        +  +   E D ++         
Sbjct: 61  -AEDLIADDDVVITSTSLGYIKRMSPENFRQQNRGGKGIKGMQTIEKDYIEDLFMTTNHH 119

Query: 562 RILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLV 616
            I+  +  G+ + +    +        G A+  L+ L   + +  +           L++
Sbjct: 120 YIMFFTNMGRVFRIKGYEIPEASRTARGTALVNLLPLQEGEKVNASLCLRDPKDEQDLIL 179

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSI 675
            +  G       SE     R G   + +  ++++     ++ D  + +V +    + F+ 
Sbjct: 180 TTKSGMVKKTALSEYANVRRNGLIAISLKEDDQLIEAKLLSKDENIILVTKKGMAIQFNE 239

Query: 676 DQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             +    R   GV      DG    +   +  +G   +  + + Y +           RG
Sbjct: 240 KDVRRTGRSSMGVIGIRLNDGDEV-IGMQESSQGENMLVVSEKGYGKLTEKSAFKAQNRG 298

Query: 735 GVGSLVPKGFPRSGKFLS 752
           G G    K   ++G  + 
Sbjct: 299 GKGMRCYKITEKTGDLVG 316



 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 9/158 (5%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             + I+L++  G A      ++         +   I LN   +++          +LVVS
Sbjct: 221 KDENIILVTKKGMAIQFNEKDVRRTGRSSMGVIG-IRLNDGDEVIGMQESSQGENMLVVS 279

Query: 619 SKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIF 673
            KG   + E+S   A  R GK      +   + + +        D  + ++     ++  
Sbjct: 280 EKGYGKLTEKSAFKAQNRGGKGMRCYKITEKTGD-LVGFKLCDQDREILLITTEGIMIRM 338

Query: 674 SIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGL 709
           S++ I  + R   GV+L +  KDG  +     K+ E  
Sbjct: 339 SLENISIIGRNASGVKLMNLDKDGDTTIASVAKVRESE 376


>gi|194761210|ref|XP_001962822.1| GF15632 [Drosophila ananassae]
 gi|190616519|gb|EDV32043.1| GF15632 [Drosophila ananassae]
          Length = 1456

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 151/412 (36%), Gaps = 40/412 (9%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDS 97
            ER+IP L DG KP  R+++    +          K A++ G V  +   H HG+ S+  +
Sbjct: 696  ERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 751

Query: 98   LVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            +V LAQ +       L+  +G FG     G   A+ RY    M+ +  LI   +D+  ++
Sbjct: 752  IVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIFHPLDDPLLE 811

Query: 154  FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
            ++ T + +  EP+ +    P +L NG  GI  G AT I +HN +EI +    +I++ E  
Sbjct: 812  YQ-TDDGQRIEPLWYLPIIPMVLVNGAEGIGTGWATKIANHNPREIMKNLRRMINSEEPV 870

Query: 214  IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
                                ++    +E    GR  +       +         + +TE+
Sbjct: 871  AMHP--------------WYKNFAGRMEYVSDGR--YVHTGNIQILPGD----RVEITEL 910

Query: 274  PYQVQKSRLIEKIAELIIAKRIPLLEDIRDE----SAEDVRIVLFPKNRSLDPDLLME-S 328
            P  V      E + E +      +   + +     +   VR V+       +     +  
Sbjct: 911  PVGVWTQNYKENVLEALANGTEKVKAVVSEYREYHTDTTVRFVVSFAPGEFNRIRSEDGG 970

Query: 329  IFMLSDMETRFPLNMNVLSMGRV--PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             + +  + +    N            +      +LKE+   R E   RR  + +  +  +
Sbjct: 971  FYRVFKLTSSLSTNQMHAFDQNNCLRRFPTTMDVLKEFYKLRLEYYARRKDYLVGQLTAQ 1030

Query: 387  VEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             + L  +   I       ++   +        +V R    +   +    +++
Sbjct: 1031 ADRLSDQARFILEKCEKTLVVENKQRKAMCDELVKRGYRPDPVKEWQRRIKM 1082


>gi|93278244|gb|ABF06587.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 91

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/91 (64%), Positives = 76/91 (83%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + +   +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDG
Sbjct: 1   LSITSKSAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQSFSLRAPLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           D+AAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  DNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 91


>gi|157167886|ref|XP_001656143.1| DNA topoisomerase/gyrase [Aedes aegypti]
 gi|108871009|gb|EAT35234.1| DNA topoisomerase/gyrase [Aedes aegypti]
          Length = 1300

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/428 (17%), Positives = 150/428 (35%), Gaps = 33/428 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            ++ +  +    + ++ S    R+IP + DG KP  R+++    +          K A++ 
Sbjct: 695  ITYKEFINLELVLFSNSDNI-RSIPCMVDGLKPGQRKVMFTCFKRN---DKREVKVAQLA 750

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+QS+  ++V LAQ +       L+   G FG     G  +A+ RY  
Sbjct: 751  GSVAEMSAYH-HGEQSLCGTIVNLAQNYVGSNNINLLVPSGQFGTRLAGGKDSASPRYIF 809

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +  LI   +D+  ++++   + +  EP+ +    P +L NGT GI  G +T IP+
Sbjct: 810  TMLSPLTRLIFHPLDDPLLEYQYD-DNQKIEPLWYLPIIPMVLVNGTEGIGTGWSTKIPN 868

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            HN ++I      +++  E  I           +                  +G       
Sbjct: 869  HNPRDIISNLRRMLNGEEPKIMHP--------WYKNFRGEIESVGHQRYLTVGNVSLLDN 920

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
             +  + E+  G+W         Q  K   +E +A     ++  + E     +   VR V+
Sbjct: 921  QKIEISELPIGTW--------TQTYKENTLEPLANGSDKQKAIISEYKEYNTDTTVRFVI 972

Query: 314  FPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
                   D    +                           + +    + I  E+   R E
Sbjct: 973  SFLPGEYDRIYAEEGGFHRVFKLTSSISTSSMNAFDDKSYLKRYDHANDIFHEYYKLRIE 1032

Query: 371  VLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
               +R ++    +    + L  +   I       ++   +        ++ R    +   
Sbjct: 1033 YYGKRKAYLEGMLQAEADRLTDQARFIMEKCDRTLVVENKKRKVMIDELIKRGYRADPVK 1092

Query: 429  DAILNLRL 436
            +    + L
Sbjct: 1093 EWKRKVAL 1100


>gi|218677660|ref|ZP_03525557.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 105

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 68/90 (75%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           R+ G+V+GK HPHG+ ++YD+L R+AQP+ 
Sbjct: 76  RVTGDVMGKYHPHGNTAIYDALARMAQPWS 105


>gi|213579808|ref|ZP_03361634.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 277

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 6/170 (3%)

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            I  L+ L  N+ I        Y+    + + ++ G       +E       G   + ++
Sbjct: 17  PIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLN 76

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             +++  V   +G D V +     K++ F  D +  M R   GVR            +  
Sbjct: 77  DGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLII 136

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              EG   +      Y +           R   G +  K   R+G  + +
Sbjct: 137 PRGEGA-ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGA 185



 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 91  DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 150

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 151 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 210

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 211 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 247


>gi|237830295|ref|XP_002364445.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|211962109|gb|EEA97304.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|221507315|gb|EEE32919.1| DNA topoisomerase II, putative [Toxoplasma gondii VEG]
          Length = 1687

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 146/386 (37%), Gaps = 31/386 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T V+ N  ++S    + +  + ++     ER+IP L DG+KP  R+++ A  +  +  
Sbjct: 764  EGTFVDHNASSLSYSDFVNKELILFSRYD-TERSIPQLVDGWKPGQRKVLFACIKKNMKH 822

Query: 69   GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++ G V      H HG+ S+  ++V +AQ F        +   G FG+    
Sbjct: 823  E---LKVAQLAGYVSEVSAYH-HGEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEG 878

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  A+A RY   R+     L+    D+  +++      +  EP ++    P +L NG+ G
Sbjct: 879  GKDASAARYIFTRLAFYTRLVFHEADDPILEYEY-EEGQRIEPKMYVPVIPTVLINGSEG 937

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G ++ +P++N +++ E               L  YI G +              +E 
Sbjct: 938  IGTGWSSFVPNYNPRDVIE--------------NLRRYIDGEEMQRMTPWYRGFRGRIEE 983

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
               G G   +       E       + +            +E+       KR  L+ D R
Sbjct: 984  NAAGTGFETIGLVRRCGEDTYEITELPIKRWTQDY--KEWLEE-NLPTAEKRDTLIADYR 1040

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPLDGI 360
            D S+ +                  E +     +++   +    L    GRV +      I
Sbjct: 1041 DCSSHEEIHFTVKVGEERVERPEREGLEKYFKLKSSLSITNLTLFDPHGRVQRYANELEI 1100

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRR 386
            +KE+   R E   RR ++ +  +++ 
Sbjct: 1101 IKEFAPIRLEFYHRRKAYCLAMLEKA 1126


>gi|17432729|gb|AAL39125.1|AF447053_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432731|gb|AAL39126.1|AF447054_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432733|gb|AAL39127.1|AF447055_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432735|gb|AAL39128.1|AF447056_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Brandenburg]
 gi|17432737|gb|AAL39129.1|AF447057_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Havana]
 gi|17432739|gb|AAL39130.1|AF447058_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Hadar]
 gi|17432741|gb|AAL39131.1|AF447059_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Hadar]
 gi|18389126|gb|AAL67622.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389128|gb|AAL67623.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389130|gb|AAL67624.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389132|gb|AAL67625.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389134|gb|AAL67626.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389136|gb|AAL67627.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389138|gb|AAL67628.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389140|gb|AAL67629.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389142|gb|AAL67630.1| DNA gyrase subunit A [Escherichia coli]
          Length = 90

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 73/90 (81%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           +IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|238695410|ref|YP_002922603.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage JS10]
 gi|220029546|gb|ACL78480.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage JS10]
          Length = 459

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 95/461 (20%), Positives = 182/461 (39%), Gaps = 39/461 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + ++      L+  ++   LAYA+ T++ RAIP++ DGFKPV R ++    +M      
Sbjct: 14  DVYDDTFTPRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKE 73

Query: 71  AFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            F K A I G V  +G  H HG+ S  ++   +A  +   +PL+ GQGNFG+     AAA
Sbjct: 74  KFHKLASIAGGVADLG-YH-HGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQKAAA 131

Query: 129 YRYTEARM-TQVAELILQGVDEDAVDFRDTYNEEDSEP--VVFPSKFPNLLANGTSGIAV 185
            RY  AR+ T  A++      +D  ++   + + + +P     P   P +L NG SGIA 
Sbjct: 132 SRYIFARIGTNFAKVY-----KDT-EYAPVHADVEHKPPAFYLP-IIPTVLLNGISGIAT 184

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT+I  H+   + +A L ++    ++  K    +  P+F              +   +
Sbjct: 185 GYATNILPHSFDSVKKAVLQVLQEKRVTKPK----VAYPEFRG------------DVVEI 228

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             G + +R  +           + +TEIPY+  +   + K+ + +  K     +D  DE+
Sbjct: 229 EPGSYELRGTYKFT----SRTQMHITEIPYKYDRETYVAKVLDPLEDKGYITYDDDCDEN 284

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               ++    K   L  +   +   ++ D       + N+  +    ++   + +++   
Sbjct: 285 GFGFKVK-IRKEYELPTEENKKHEKIMKDFGLIERRSQNLTVINEKGKLKVYEDVVELIR 343

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILK----GLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
                            I    E  K            ID ++ I     K     ++  
Sbjct: 344 DFVEVRKTFVQKRIDGKIIETEEAFKLALAKATFIKDVIDGVVVIQGKTRKVLTEELTGN 403

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
            +     D ++ + +  +   E  ++  E      E +   
Sbjct: 404 KVYGEYADKLVAMNIFHITSDEAKKLALEAKAKKEEHQYWK 444


>gi|325136790|gb|EGC59389.1| DNA gyrase, A subunit [Neisseria meningitidis M0579]
          Length = 517

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 134/391 (34%), Gaps = 67/391 (17%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + L+E Q DAIL + LR+L  L++ +I     NL+ +      +L+  ++    I  E+ 
Sbjct: 60  YYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELE 119

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRS 532
           E+K  +        RR+   E++        + +I +  + V +++ G+         ++
Sbjct: 120 EIKTNYGDE-----RRS---EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQA 171

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI 590
            +       A   K+ D ++    A+T D ++  +  GK + +    L        G  I
Sbjct: 172 QRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPI 231

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             +I L   + +        +     +   +++G    V+ S       +G   + +   
Sbjct: 232 NNVIQLEEGEKVSAILAVREFPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEG 291

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFS----------------IDQIP----------- 679
           + +    +  G D + +     K + F+                  +I            
Sbjct: 292 DYLVGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSE 351

Query: 680 ---EMSRGKGVR----------LQSYK-DGGISDVICFKI---CEGLTWIDSAGRSYNRS 722
                 +  GVR                DG I  +I F       GL  + +    Y + 
Sbjct: 352 NALPSGK-HGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKR 410

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +GG G++      R+G  +++
Sbjct: 411 TPIADYSRKNKGGQGNIAINTGERNGDLVAA 441



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 594 IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + L  +  IV+   +         ++L  ++ G       ++     + G+  + +++ E
Sbjct: 374 MRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 433

Query: 649 K---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +   +     V   D + ++     L+   ++QI E  R   GV+L +  +G     +  
Sbjct: 434 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLER 493

Query: 704 KICEGLTWIDSA 715
              +     D++
Sbjct: 494 VAEDESELSDAS 505



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 5/92 (5%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWID 713
           +G  V     N       I      ++G +G    +   ++G +         + L  I 
Sbjct: 395 SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLIT 454

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           S                  R   G  +     
Sbjct: 455 SG--GVLIRTKVEQIRETGRAAAGVKLINLDE 484


>gi|9632132|ref|NP_048939.1| hypothetical protein PBCV1_A583L [Paramecium bursaria Chlorella virus
            1]
 gi|2447074|gb|AAC96932.1| PBCV-1 DNA topoisomerase II [Paramecium bursaria Chlorella virus 1]
          Length = 1061

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 84/472 (17%), Positives = 174/472 (36%), Gaps = 49/472 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                 ++     V +   +++  + ++     ER+IP + DGFKP  R++++   +  L 
Sbjct: 619  EPGNQLDHKKPEVPVPDFIDKELILFSRYD-LERSIPSVVDGFKPSQRKVLYCAFKRNLT 677

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K A+  G V      H HG+ S+  ++V LAQ +        +  +G FG+   
Sbjct: 678  SD---VKVAQFSGYVAEHSAYH-HGEVSLQGTIVNLAQDYVGSNNINWLLPEGQFGSRLQ 733

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   ++      +    D++ + +    + +  EP  +    P++L NG+S
Sbjct: 734  GGKDHASARYIFTKLNPKTRQVFVDTDDNLLKYLYD-DGDKIEPECYVPIIPSILVNGSS 792

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IPS+N ++I +    L              I G D        +  +   +
Sbjct: 793  GIGTGSSTNIPSYNPKDIVDNVKRL--------------ISGEDLVEMKPWYKGFKG--K 836

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                  G +  +  +           IVV+E+P         E +  L+  K I    + 
Sbjct: 837  IMETSPGVYVTKGLY-----MPNGKTIVVSELPVGKWTHDYKEHLDGLLEKKIISYFREK 891

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDG 359
              ++     I                    +  +ET             G++ +      
Sbjct: 892  HSDTDVLFEIDFV-----------GNPNIDILKLETTIRSTNMHAFDPSGKIKKYDTPLD 940

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRR---VEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
            I+++W   R+++  +R ++ ++ +  R    +     +    N + II           +
Sbjct: 941  IIRDWFEVRKDLYVKRKAYLLEDLTHRTNIAQNKHRFITMVNNDEIIINKKHESVISAEL 1000

Query: 417  MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                F   + + D +LN+R+ SL      +++ E   L  E + +     + 
Sbjct: 1001 EKLNFYKVDGKYDYLLNMRISSLTLERATELEREAVKLNKELDDLSKTTETD 1052


>gi|94467527|dbj|BAE93905.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 90

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 70/90 (77%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VY ++VRLAQPF  RY L+ GQGN
Sbjct: 1   LFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYKTIVRLAQPFSMRYMLVDGQGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           FG++DGDSAAA RYTE RM ++A  +L  +
Sbjct: 61  FGSVDGDSAAAMRYTEVRMAKIAHELLADL 90


>gi|3152656|gb|AAC17106.1| DNA-gyrase subunit A [Citrobacter freundii]
          Length = 91

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 50/91 (54%), Positives = 69/91 (75%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  
Sbjct: 1   IGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHE 60

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           ++  ++++ VDF D Y+  +  P V P+K P
Sbjct: 61  LMADLEKETVDFVDNYDGTEQIPDVMPTKIP 91


>gi|325119604|emb|CBZ55157.1| hypothetical protein NCLIV_055820 [Neospora caninum Liverpool]
          Length = 1641

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 149/388 (38%), Gaps = 35/388 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T V+ N  ++S    + +  + ++     ER+IP L DG+KP  R+++ A  +  +  
Sbjct: 735  EGTFVDHNASSLSYADFVNKELILFSRYD-TERSIPQLVDGWKPGQRKVLFACIKKNMKH 793

Query: 69   GAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                 K A++ G V  +   H HG+ S+  ++V +AQ F        +   G FG+    
Sbjct: 794  E---IKVAQLAGYVAEVSAYH-HGEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEG 849

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  A+A RY   R+     L+    D+  +++      +  EP ++    P +L NG+ G
Sbjct: 850  GKDASAARYIFTRLAFYTRLVFHEADDPILEYEY-EEGQRIEPKMYVPVIPTVLINGSEG 908

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G ++ +P++N +++ E               L  YI G +              +E 
Sbjct: 909  IGTGWSSFVPNYNPRDVIE--------------NLRRYIDGEEMQRMTPWYRGFRGKIEE 954

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE--KIAELIIAKRIPLLED 300
               G G               G     +TE+P +       E  +       KR  L+ D
Sbjct: 955  NSAGTGF-----ETSGLVEKCGEGAFEITELPIKKWTQDYKEWLEENLPTAEKRDTLIAD 1009

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPLD 358
             RD S+ +        +         E +     ++T        L    GRV +     
Sbjct: 1010 YRDCSSHEEIHFTVKVSEERLERPEREGLEKYFKLKTSLSTTNLTLFDPHGRVQRYANEL 1069

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRR 386
             I+KE+   R +   RR ++ +  +++ 
Sbjct: 1070 EIIKEFAPIRLDFYHRRKAYCLAMLEKS 1097


>gi|295315161|gb|ADF97668.1| gyrase subunit A [Campylobacter coli]
 gi|295315167|gb|ADF97671.1| gyrase subunit A [Campylobacter coli]
 gi|295315169|gb|ADF97672.1| gyrase subunit A [Campylobacter coli]
 gi|295315171|gb|ADF97673.1| gyrase subunit A [Campylobacter coli]
 gi|295315173|gb|ADF97674.1| gyrase subunit A [Campylobacter coli]
 gi|295315179|gb|ADF97677.1| gyrase subunit A [Campylobacter coli]
 gi|295315181|gb|ADF97678.1| gyrase subunit A [Campylobacter coli]
 gi|295315185|gb|ADF97680.1| gyrase subunit A [Campylobacter coli]
 gi|295315187|gb|ADF97681.1| gyrase subunit A [Campylobacter coli]
 gi|295315189|gb|ADF97682.1| gyrase subunit A [Campylobacter coli]
 gi|295315191|gb|ADF97683.1| gyrase subunit A [Campylobacter coli]
 gi|295315193|gb|ADF97684.1| gyrase subunit A [Campylobacter coli]
 gi|295315195|gb|ADF97685.1| gyrase subunit A [Campylobacter coli]
 gi|295315197|gb|ADF97686.1| gyrase subunit A [Campylobacter coli]
 gi|295315201|gb|ADF97688.1| gyrase subunit A [Campylobacter coli]
 gi|295315203|gb|ADF97689.1| gyrase subunit A [Campylobacter coli]
 gi|295315211|gb|ADF97693.1| gyrase subunit A [Campylobacter coli]
 gi|295315213|gb|ADF97694.1| gyrase subunit A [Campylobacter coli]
 gi|295315217|gb|ADF97696.1| gyrase subunit A [Campylobacter coli]
 gi|295315219|gb|ADF97697.1| gyrase subunit A [Campylobacter coli]
 gi|295315221|gb|ADF97698.1| gyrase subunit A [Campylobacter coli]
 gi|295315223|gb|ADF97699.1| gyrase subunit A [Campylobacter coli]
 gi|295315225|gb|ADF97700.1| gyrase subunit A [Campylobacter coli]
          Length = 84

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 57/84 (67%), Positives = 71/84 (84%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSA 126
           Q F  RYP I GQGNFG+IDGD A
Sbjct: 61  QDFSMRYPSIDGQGNFGSIDGDGA 84


>gi|254580647|ref|XP_002496309.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
 gi|238939200|emb|CAR27376.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
          Length = 1427

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 86/428 (20%), Positives = 159/428 (37%), Gaps = 39/428 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +  + +   + +  + ++L+    R+IP++ DGFKP  R++I+   +  + 
Sbjct: 657  EPGTVLDPRLTEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVIYGSFKRNIT 715

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                    A  V E     H HG  S+  +++ LAQ F       +++  G+FG     G
Sbjct: 716  SEIKISTLANYVAEQT-DYH-HGPDSLAQTIIGLAQSFVGSNNIYVLNPIGSFGTRATGG 773

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANGT 180
              AAA RY    +T++   I    D    D    Y   +E   EP  +    P LL NG 
Sbjct: 774  KDAAAPRYISTELTKITRKIFHPFD----DPLYNYLQEDENTVEPEWYLPILPMLLINGG 829

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +T+IP  N  +I      L++  E  +E++  +  G                 
Sbjct: 830  EGIGTGWSTNIPPFNPLDIVRNLRHLMNGEE--LEEMHPWFRG---------WTGT---- 874

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLL 298
               ++G   +RV  R        G   + +TE+P ++  S L E   +      K  P +
Sbjct: 875  -IEKIGPQRYRVYGRIE----QTGPCALEITELPARMWTSTLKEHLLLGLGGNDKMKPWI 929

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            +D+ ++    +R V+      +D   +M        + T    NM         ++   +
Sbjct: 930  KDLEEQHGNGIRFVVRLTQEEMDKTRVMGFYERFKLISTISLNNMVAFDPHG--KIKKYE 987

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             + +        V       R   +  R++     L   +   ++I         +P   
Sbjct: 988  NVSEILTEFYY-VRLEYYQKRKDYMSERLQWEVEKLSFQIKFIKLIIEGEMSITNRPRKQ 1046

Query: 419  SRFSLTEN 426
                L E 
Sbjct: 1047 IIADLEEK 1054


>gi|253742615|gb|EES99414.1| DNA topoisomerase II [Giardia intestinalis ATCC 50581]
          Length = 1492

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 77/588 (13%), Positives = 180/588 (30%), Gaps = 39/588 (6%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKE--RAIPDLRDGFKPVHRRIIHAMSEM 64
            ++ +T ++ +   + +   +++  + Y    I+   RAIP L DG KP  R++++A  + 
Sbjct: 723  TDPDTYLDLSPTKIDITAFVDKELVLY---DIESNQRAIPSLMDGLKPGQRKVLYACFKR 779

Query: 65   GLDFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN 120
             L       K +++ G V  K   H HG+ S+  ++V +AQ F       L+   G FG+
Sbjct: 780  NLKSK---LKVSQLSGYVSDKAAYH-HGEASLNGTIVNMAQSFTGSNNIALLYPAGIFGS 835

Query: 121  --IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
                G  ++A RY    +  +A  +    D+  + +++  + +  EP  +    P +L N
Sbjct: 836  RARGGKDSSAPRYISTYLDPLARYLFPEPDDAIMQYKED-DGKVIEPFYYAPILPMVLIN 894

Query: 179  GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
            G+ GI  G +T+IP  +  ++  +    I       EK         +         +  
Sbjct: 895  GSDGIGTGFSTTIPQFDPLDMLHSIRLRIYGKTTRNEKRNLKPFSNGWKGTMTHEYDKSG 954

Query: 239  IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
                       +R+   + V ++      I +T++P  V      E+I   I        
Sbjct: 955  K-------FVRWRMTGCFSVVDLKT----IQITDLPIGVWTESYREEIETWIKGNEEAGA 1003

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
                                +             +  + +   ++     G  P +M + 
Sbjct: 1004 VKKPAAKVASTAKGKPKLKGAPSAAKE------KATTKDQLYDSVTGYYKGIHPALMKVI 1057

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             +      +    L      R        +I     +     D I+   + +   +P   
Sbjct: 1058 DMSDNNTVNIIVTLSDE-CARYLIGTSDADIKSCNTVGTARYDNIVKGFKLDGSIRP--S 1114

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            + +   E  +  + +   + +      ++         +   +D       ++   I   
Sbjct: 1115 NMWLYNERNMLCLYHTPFKIIDAFYTKRLALYGVRRNNQLIDMDDKSLMLNEKARFIKLI 1174

Query: 479  IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
            I +     +         T           + +  +I      ++   +       S   
Sbjct: 1175 IED---KLNIKNVPRDSVTEILWNKYQFHPSRKHRIILLSHRNLINKKQTLRVDDDSERP 1231

Query: 539  DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            +      +      +             +           +      +
Sbjct: 1232 EEEDDADQRDLEKHLEATVKDLVGAQFFNAINSWNGFTVQDRNECYEY 1279


>gi|122893193|gb|ABM67553.1| DNA gyrase [Staphylococcus intermedius]
 gi|122893201|gb|ABM67557.1| DNA gyrase [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 65/79 (82%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYEAMVR 60

Query: 101 LAQPFVQRYPLISGQGNFG 119
           +AQ F  RYPL+ GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|17535065|ref|NP_496536.1| TOPoisomerase family member (top-2) [Caenorhabditis elegans]
 gi|6175065|sp|Q23670|TOP2_CAEEL RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
            topoisomerase II
 gi|3878527|emb|CAA88867.1| C. elegans protein K12D12.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
 gi|3881920|emb|CAA94177.1| C. elegans protein K12D12.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1520

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 85/503 (16%), Positives = 168/503 (33%), Gaps = 46/503 (9%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDS 97
            ER+IP L DGFKP  R+++ A  +          K A++ G V  I   H HG+QS+  +
Sbjct: 747  ERSIPCLVDGFKPGQRKVLFACFK---RADKREVKVAQLAGAVAEISAYH-HGEQSLMGT 802

Query: 98   LVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            +V LAQ +       L+   G FG     G  +A+ RY   +++ V   +    D++ + 
Sbjct: 803  IVNLAQDYVGSNNINLLLPIGQFGTRLQGGKDSASARYIFTQLSPVTRTLFPAHDDNVLR 862

Query: 154  FRDTYNEEDSE-PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
            F   Y E     P  +    P +L NG  GI  G +T+IP++N +E+ +    LI     
Sbjct: 863  FL--YEENQRIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRELVKNIKRLI----- 915

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
                          P   +    +    +  ++    F       V +       I +TE
Sbjct: 916  -----------AGEPQKALAPWYKNFRGKIIQIDPSRFACYGEVAVLDDNT----IEITE 960

Query: 273  IPYQVQKSRLIEKI---AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES- 328
            +P +       EK+         K+ P++ D ++   +     +   +     +L     
Sbjct: 961  LPIKQWTQDYKEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPGKLRELERGQD 1020

Query: 329  IFMLSDMETRFPLNMNV-LSMGRVPQVMPLDGILKEWL---AHRREVLFRRSSFRMQAID 384
            +  +  ++        V        +       + +        + V  +     +    
Sbjct: 1021 LHQVFKLQAVINTTCMVLFDAAGCLRTYTSPEAITQEFYDSRQEKYVQRKEYLLGVLQAQ 1080

Query: 385  RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +    +   I     +EI+   + +     V++      +         +L+ LR+  E
Sbjct: 1081 SKRLTNQARFILAKINNEIVLENKKKAAIVDVLIKMKFDADPVKKWKEEQKLKELRESGE 1140

Query: 445  YQIKSEL-----DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             ++  +                   + +    ++ +            K+  +       
Sbjct: 1141 IELDEDDLAAVAVEEDEAISSAAKAVETKLSDYDYLVGMALIKLSEEEKNKLIKESEEKM 1200

Query: 500  CEVSRADKATLQQAMIEKEPITV 522
             EV   +K T Q    E     V
Sbjct: 1201 AEVRVIEKKTWQDLWHEDLDNFV 1223


>gi|307211209|gb|EFN87409.1| DNA topoisomerase 2 [Harpegnathos saltator]
          Length = 1492

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 94/526 (17%), Positives = 179/526 (34%), Gaps = 51/526 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E++ +AVS    +    + Y+      R+IP++ DGFKP  R+++    +        
Sbjct: 675  LYEKDTRAVSFSDFINVELVLYSNYDNV-RSIPNMIDGFKPGQRKVMFTCLKRN---DRR 730

Query: 72   FKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V      H HG+ S+  +++ LAQ F       L+   G FG     G  
Sbjct: 731  EVKVAQLAGSVAEHSAYH-HGETSLMATIINLAQNFVGSNNINLLQPIGQFGTRLAGGKD 789

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA+ RY    ++ +A  I    D+  +      + +  EPV +    P +L NG  GI  
Sbjct: 790  AASPRYIFTMLSPLARYIFHKHDDALLKHEYD-DNQKIEPVFYIPVIPMVLVNGADGIGT 848

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
            G  T IP++N +EI E    ++D  +                      ++ + +VES   
Sbjct: 849  GWMTKIPNYNPREIIENLQRMMDGIDPKPM--------------TPYYKNFKGVVESCGD 894

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---LIIAKRIPLLEDIR 302
             R  + +     V     G   + +TE+P         E + E       K   ++ D +
Sbjct: 895  FR--YVISGEISVI----GPDKLEITELPIGTWTQTYKETVLEPMLHGSDKTPAVITDYK 948

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            + + +     +   NR    +L  + +     ++T   +           Q +     + 
Sbjct: 949  EYNTDTAVHFIVMLNRDKLLELEKDGLHKAFKIQTTMTITSMCAFDEN--QCLNKYDSVI 1006

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVE------ILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
            + L    +V       R   ++  ++        +   I       ++   + +      
Sbjct: 1007 QILKRFYKVRMDTYHKRKDYLEGVLQAEAAKLSNQARFILEKCDGTLVIENKKKKDMIAE 1066

Query: 417  MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            +V R   ++  V      +L   R+    ++    D   A    I     +         
Sbjct: 1067 LVRRNYESDPVVAW----KLSQNREQVLEEVAENDDENAAAATAITMESENFDYLLGMTM 1122

Query: 477  CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
              +        K   L +R     E+ R    T      E     +
Sbjct: 1123 WTL----TKEKKDDLLRQRDEKVAELKRLQARTPISLWKEDLDNLL 1164


>gi|33636521|gb|AAQ23558.1| RE49802p [Drosophila melanogaster]
          Length = 1157

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 161/453 (35%), Gaps = 40/453 (8%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDS 97
            ER+IP L DG KP  R+++    +          K A++ G V  +   H HG+ S+  +
Sbjct: 577  ERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 632

Query: 98   LVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            +V LAQ F       L+  +G FG     G   A+ RY    M+ +  LI   +D+  +D
Sbjct: 633  IVNLAQNFVGANNINLLEPRGQFGTRLSGGKDCASARYIFTIMSPLTRLIYHPLDDPLLD 692

Query: 154  FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
            ++   + +  EP+ +    P +L NG  GI  G +T I ++N +EI +    +I+  E S
Sbjct: 693  YQVD-DGQKIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMKNLRKMINGQEPS 751

Query: 214  IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            +                   ++    +E    GR  +       +         + ++E+
Sbjct: 752  VMHP--------------WYKNFLGRMEYVSDGR--YIQTGNIQIL----SGNRLEISEL 791

Query: 274  PYQVQKSRLIEKIAELIIAKRIP---LLEDIRDESAEDVRIVLFPKNRSLDP--DLLMES 328
            P  V      E + E +         ++ + R+   +     +                 
Sbjct: 792  PVGVWTQNYKENVLEPLSNGTEKVKGIISEYREYHTDTTVRFVISFAPGEFERIHAEEGG 851

Query: 329  IFMLSDMETRFPLNMNVLSMGRV--PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             + +  + T    N            +      ILKE+   RRE   RR  F +  +  +
Sbjct: 852  FYRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILKEYYKLRREYYARRRDFLVGQLTAQ 911

Query: 387  VEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             + L  +   I      +++   +        ++ R    +   +    +++    + +E
Sbjct: 912  ADRLSDQARFILEKCEKKLVVENKQRKAMCDELLKRGYRPDPVKEWQRRIKMEDAEQADE 971

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
               + E        +         ++ + ++  
Sbjct: 972  EDEEEEEAAPSVSSKAKKEKEVDPEKAFKKLTD 1004


>gi|317419224|emb|CBN81261.1| DNA topoisomerase 2-alpha [Dicentrarchus labrax]
          Length = 968

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 124/311 (39%), Gaps = 35/311 (11%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           K++S    + +  + ++ S   ER+IP L DG KP  R+++    +          K A+
Sbjct: 678 KSLSYNDFVNKELVLFSNSD-NERSIPCLVDGLKPGQRKVLFCCFKRN---DKREVKVAQ 733

Query: 78  IVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRY 131
           + G V  +   H HG+ S+  ++V LAQ F       L+   G FG     G  +A+ RY
Sbjct: 734 LAGSVAEMSAYH-HGEVSLMMTIVGLAQNFVGSNNMNLLQPLGQFGTRLHGGKDSASPRY 792

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATS 190
               ++ +A L+   VD++ + +   Y++    EP  +    P +L NG  GI  G A+ 
Sbjct: 793 IFTMLSPLARLVFPSVDDNLLKY--NYDDNQRVEPEWYMPIIPTVLVNGAEGIGTGWASK 850

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV--ESYRLGRG 248
           IP++N++EI      +++  E            P  P       + E ++  +    G  
Sbjct: 851 IPNYNIREIVSNIHRMLNGDEPL----------PMLPNYKGFRGTIEHVMDNQFMNSGEV 900

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
                    + E+   SW         Q  K  ++E +      K   L+ D R+   + 
Sbjct: 901 AIIDSTTIEISELPVKSW--------TQTYKENVLEPMLN-GTEKVPSLITDFREYHTDT 951

Query: 309 VRIVLFPKNRS 319
               +      
Sbjct: 952 TVRFVIKMTEE 962


>gi|213407866|ref|XP_002174704.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
 gi|212002751|gb|EEB08411.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
          Length = 1499

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 143/379 (37%), Gaps = 37/379 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            + ++  + +  + ++++    R+IP + DG KP  R++I+ M +  L   A   K  ++ 
Sbjct: 721  IEIKNFINQELILFSMADNI-RSIPSVVDGLKPGQRKVIYGMFKKNLKNEA---KVEQLA 776

Query: 80   GEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G +  +   H HG+ S+  +++ LA  F       L+  +G FG+    G  AA  RY  
Sbjct: 777  GYISEQTAYH-HGETSLQQTIIGLAHNFVGSNNINLLLPKGQFGSRIEGGKDAAQPRYIF 835

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
               +++A L+    D+  +++         EP  +    P LL NG  GI  G +T IP+
Sbjct: 836  TMPSRMARLLFDKRDDPILNY-LNDEGLWVEPDYYVPIVPMLLVNGAEGIGTGWSTFIPN 894

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
             N  ++ +    LI N              P  P        + +I +        ++V 
Sbjct: 895  FNPSDLVKNIRHLIKNE-------------PLEPMHPWYRGFKGTIQQM---TPDRYKVS 938

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-IAKRIPLLEDIRDESAEDVRIV 312
                          + +TE+P ++    + E +  L+   K+   ++D  +   E+    
Sbjct: 939  GIIE----QVSDDTVDITELPVRLWTQDMKEYLESLMAADKQGSFIKDYTEYHTEENVHF 994

Query: 313  LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ-VMPLDGILKEWLAHRREV 371
                 +      L E +     +      +  V      PQ  +       + L    EV
Sbjct: 995  RVKLTKEGMATALAEGLENKFKVARTLATSNMVAFD---PQGRIRKYDSAYDILKEFYEV 1051

Query: 372  LFRRSSFRMQAIDRRVEIL 390
              R    R + +   +E +
Sbjct: 1052 RLRYYQRRKEHLVNDLETV 1070


>gi|124108709|gb|ABM90931.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 73/90 (81%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           AA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  AAMRYTEIRLAKIAHGLMADLEKETVDFVD 90


>gi|5453231|gb|AAD43480.1| DNA gyrase subunit A [Staphylococcus simulans]
 gi|5453232|gb|AAD43481.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453233|gb|AAD43482.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453235|gb|AAD43484.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453237|gb|AAD43486.1| DNA gyrase subunit A [Staphylococcus capitis]
          Length = 81

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +Y+++VR+AQ F  RYPL+ G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|118139698|gb|ABK63295.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 58/89 (65%), Positives = 73/89 (82%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + +   +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDG
Sbjct: 1   LSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAV 152
           D+AAA RYTEARMT++AE  L+ +D+D V
Sbjct: 61  DNAAAMRYTEARMTRIAEEALRDLDKDTV 89


>gi|118139704|gb|ABK63298.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 58/88 (65%), Positives = 73/88 (82%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            +   +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD
Sbjct: 2   RITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGD 61

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAV 152
           +AAA RYTEARMT++AE +L+ +D+D V
Sbjct: 62  NAAAMRYTEARMTRIAEEVLRDLDKDTV 89


>gi|122893199|gb|ABM67556.1| DNA gyrase [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 64/79 (81%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y ++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYGAMVR 60

Query: 101 LAQPFVQRYPLISGQGNFG 119
           +AQ F  RYPL+ GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|121511880|gb|ABM55391.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 94/258 (36%), Gaps = 17/258 (6%)

Query: 512 QAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  EP+ V I++ G+            K       A+   + D ++    ++T D +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 564 LLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           + ++  G+ Y L    +        G+A+  LI+L  ++ I+       +D +  L+  +
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAIIPTPDFDESKSLVFFT 120

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSID 676
             G       +E       G   + +   +++           ++ +     + + F ++
Sbjct: 121 RNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELE 180

Query: 677 QIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +  +  R  +GVR   +K D  I         E    +  + +   +        L  R 
Sbjct: 181 KTRDQGRSTRGVRGIKFKIDTDIVVYADVIDSEEQEILTVSEKGIGKRTTIEEYRLTNRA 240

Query: 735 GVGSLVPKGFPRSGKFLS 752
           G G +  K  P++G  + 
Sbjct: 241 GSGVIAMKLSPKTGNIVG 258


>gi|118139688|gb|ABK63290.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139692|gb|ABK63292.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139694|gb|ABK63293.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139700|gb|ABK63296.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139702|gb|ABK63297.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 58/89 (65%), Positives = 73/89 (82%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + +    A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDG
Sbjct: 1   LSITSKFAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAV 152
           D+AAA RYTEARMT++AE +L+ +D+D V
Sbjct: 61  DNAAAMRYTEARMTRIAEEVLRDLDKDTV 89


>gi|124108741|gb|ABM90947.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/89 (59%), Positives = 72/89 (80%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFR 155
           AA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  AAMRYTEIRLAKIAHGLMADLEKETVDFV 89


>gi|51467892|ref|NP_001003834.1| DNA topoisomerase 2-alpha [Danio rerio]
 gi|49619131|gb|AAT68150.1| topoisomerase 2 [Danio rerio]
          Length = 1574

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 158/426 (37%), Gaps = 35/426 (8%)

Query: 18   KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            K++S    + +  + ++ S   ER+IP + DG KP  R+++    +          K A+
Sbjct: 690  KSLSYHDFINKELVLFSNSD-NERSIPCMVDGLKPGQRKVVFCCFKRN---DKREVKVAQ 745

Query: 78   IVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRY 131
            + G V  +   H HG+ S+  ++V LAQ F       L+   G FG     G  +A+ RY
Sbjct: 746  LAGSVAEMSAYH-HGEVSLMMTIVGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRY 804

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATS 190
                ++ +A L+   VD++ + +   Y++    EP  +    P +LANG  GI  G A+ 
Sbjct: 805  IFTMLSTLARLLFPVVDDNLLKY--NYDDYLRVEPEWYMPIIPLVLANGGEGIGTGWASR 862

Query: 191  IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV--ESYRLGRG 248
            IP ++V+EI      +I+  E         +   + P+      + + +   +    G  
Sbjct: 863  IPKYDVREIINNIHRMINGEEP--------LPMVNLPSYKGFKGTIDELAKNQYVNNGEV 914

Query: 249  GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
                     + E+   +W       P    K  ++E +      K   L+ D ++   + 
Sbjct: 915  AIIDSTTIEITELPVKTW------TPGLTYKENVLEVMLN-GTEKVPALITDYKEYHTDT 967

Query: 309  VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLA 366
                +         +     +  +  ++     N  VL      + +   +  ILKE+  
Sbjct: 968  TVRFVVKMTEERLREAEAAGLHKVFKLQNLLTCNSMVLFDHVGSLKKYESVQDILKEFFE 1027

Query: 367  HRREVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
             R +    R  + +     +      +   I       ++   + + +   ++      +
Sbjct: 1028 LRMKYYVLRKDWLVGMLGAESAKLSNQARFILEKIQGTLVIENKPKKELIRMLQQMGYDS 1087

Query: 425  ENQVDA 430
            +     
Sbjct: 1088 DPVKAW 1093


>gi|301120494|ref|XP_002907974.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
 gi|262103005|gb|EEY61057.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
          Length = 1329

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/317 (20%), Positives = 126/317 (39%), Gaps = 23/317 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V+ +  +    + ++ +  + R++P + DG K   R+++ A  +  L       K A++
Sbjct: 665 SVTYQDFVNRELIQFSHADNQ-RSLPSVVDGLKISQRKVLFACMKRKLTSE---VKVAQL 720

Query: 79  VGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYT 132
            G        H HG+ S++ ++V +AQ F   +  PL+   G FG     G  AA+ RY 
Sbjct: 721 AGYCSEHTAYH-HGEASLHSTIVNMAQDFVGSKNLPLLFPSGQFGTRLQGGKDAASPRYI 779

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
              + +   L+    D+  + + D  +    EPV +    P LL NG  GI  G ++SIP
Sbjct: 780 FTLLQKHTRLVFPEEDDALLRYADD-DGFPVEPVFYVPIIPMLLVNGAEGIGTGWSSSIP 838

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H+   + +  L L+D  E   +  +      +        +      +  + G+  F  
Sbjct: 839 CHHPVLVIDNLLKLLDAEEAGDDLSIV-----ELSLMTPWAKGFSG--DIRQTGKHSFVS 891

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R           +  + VTE+P         + + +L+  K I    +   E      I 
Sbjct: 892 RGNVE----QVNTSTVRVTELPVGKWVEDYKKFLWDLVGKKAIRSFSEHHSERDVRFDIS 947

Query: 313 LFPKNRSLDPDLLMESI 329
           +   + +   +   E+ 
Sbjct: 948 MTRSDLAKYAEDAAENC 964


>gi|24020922|gb|AAN40856.1| ParC [Streptococcus mitis]
          Length = 104

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 72/104 (69%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN
Sbjct: 1   LYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
            G++DGD  AA RYTEAR++++A  +LQ +++  V F   +++ 
Sbjct: 61  NGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDT 104


>gi|121511878|gb|ABM55390.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 94/258 (36%), Gaps = 17/258 (6%)

Query: 512 QAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  EP+ V I++ G+            K       A+   + D ++    ++T D +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 564 LLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           + ++  G+ Y L    +        G+A+  LI+L  ++ I+       +D +  L+  +
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAIIPTPDFDESKSLVFFT 120

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSID 676
             G       +E       G   + +   +++           ++ +     + + F ++
Sbjct: 121 RNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELE 180

Query: 677 QIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +  +  R  +GVR   +K D  I         E    +  + +   +        L  R 
Sbjct: 181 KTRDQGRSTRGVRGIKFKIDTDIVVDADVIDSEEQEILTVSEKGIGKRTTIEEYRLTNRA 240

Query: 735 GVGSLVPKGFPRSGKFLS 752
           G G +  K  P++G  + 
Sbjct: 241 GSGVIAMKLSPKTGNIVG 258


>gi|190334100|gb|ACE73898.1| topoisomerase IV subunit A [Bartonella vinsonii]
          Length = 100

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/96 (73%), Positives = 83/96 (86%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDGD+AAA RYTEA
Sbjct: 1   CARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLIDGQGNFGNIDGDNAAAMRYTEA 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           RMT+VA L+L+G++E+A+DFR TYNEED EPVV P 
Sbjct: 61  RMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPG 96


>gi|124108685|gb|ABM90919.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108737|gb|ABM90945.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   IGHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|22094460|gb|AAM91909.1|AF498909_1 gyrase A [Salmonella enterica subsp. enterica serovar Heidelberg]
          Length = 90

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/90 (56%), Positives = 72/90 (80%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDED 150
           IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKE 90


>gi|238592069|ref|XP_002392796.1| hypothetical protein MPER_07581 [Moniliophthora perniciosa FA553]
 gi|215459345|gb|EEB93726.1| hypothetical protein MPER_07581 [Moniliophthora perniciosa FA553]
          Length = 321

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 113/311 (36%), Gaps = 29/311 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +  ++ +     + +  + ++++    R+IP + DG KP  R++I    +         
Sbjct: 28  FDHRIEEIPYSEFINKELILFSMADNV-RSIPSVADGLKPGQRKVIWGCFKRNF---KKE 83

Query: 73  KKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID--GDSA 126
            K  ++VG V  K   H HG+QS+  ++V LAQ F       L+   G +G  D  G   
Sbjct: 84  IKVMQLVGYVSEKAVYH-HGEQSLMMTIVNLAQDFVGSNNINLLMPNGQYGTRDQGGKDH 142

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE-PVVFPSKFPNLLANGTSGIAV 185
           A+ RY     + +A  I    D+  V      +E     P  +    P +L NG  GI  
Sbjct: 143 ASARYINTLPSLMARTIFHQDDD--VLLTPQKDENHIIEPEWYMPVLPMVLINGAEGIGT 200

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G +T+IP +N ++I +    L++  E+                        +  V+    
Sbjct: 201 GWSTNIPCYNPRDIVDNLKRLMNGEEVVPMHP--------------WWRGFKGEVKFVSK 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +      A   +++       + + +     +       + E      I   ++     
Sbjct: 247 NKYDVTGIA-TKIDDSTVEITELPIHKWTQNFKAELEAMMVGEKGAEGSIKNYQEHHANQ 305

Query: 306 AEDVRIVLFPK 316
                I + PK
Sbjct: 306 DVHFVIQMDPK 316


>gi|17136538|ref|NP_476760.1| topoisomerase 2 [Drosophila melanogaster]
 gi|135995|sp|P15348|TOP2_DROME RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|8711|emb|CAA43523.1| DNA topoisomerase type II [Drosophila melanogaster]
 gi|22946840|gb|AAF53802.2| topoisomerase 2 [Drosophila melanogaster]
          Length = 1447

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 161/453 (35%), Gaps = 40/453 (8%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDS 97
            ER+IP L DG KP  R+++    +          K A++ G V  +   H HG+ S+  +
Sbjct: 692  ERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 747

Query: 98   LVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            +V LAQ F       L+  +G FG     G   A+ RY    M+ +  LI   +D+  +D
Sbjct: 748  IVNLAQNFVGANNINLLEPRGQFGTRLSGGKDCASARYIFTIMSPLTRLIYHPLDDPLLD 807

Query: 154  FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
            ++   + +  EP+ +    P +L NG  GI  G +T I ++N +EI +    +I+  E S
Sbjct: 808  YQVD-DGQKIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMKNLRKMINGQEPS 866

Query: 214  IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            +                   ++    +E    GR  +       +         + ++E+
Sbjct: 867  VMHP--------------WYKNFLGRMEYVSDGR--YIQTGNIQIL----SGNRLEISEL 906

Query: 274  PYQVQKSRLIEKIAELIIAKRIP---LLEDIRDESAEDVRIVLFPKNRSLDP--DLLMES 328
            P  V      E + E +         ++ + R+   +     +                 
Sbjct: 907  PVGVWTQNYKENVLEPLSNGTEKVKGIISEYREYHTDTTVRFVISFAPGEFERIHAEEGG 966

Query: 329  IFMLSDMETRFPLNMNVLSMGRV--PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             + +  + T    N            +      ILKE+   RRE   RR  F +  +  +
Sbjct: 967  FYRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILKEYYKLRREYYARRRDFLVGQLTAQ 1026

Query: 387  VEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             + L  +   I      +++   +        ++ R    +   +    +++    + +E
Sbjct: 1027 ADRLSDQARFILEKCEKKLVVENKQRKAMCDELLKRGYRPDPVKEWQRRIKMEDAEQADE 1086

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
               + E        +         ++ + ++  
Sbjct: 1087 EDEEEEEAAPSVSSKAKKEKEVDPEKAFKKLTD 1119


>gi|299755855|ref|XP_001828929.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
 gi|298411411|gb|EAU92936.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
          Length = 1557

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 19/233 (8%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++  ++ +     + +  + ++++    R+IP + DG KP  R++I    +  L 
Sbjct: 730 KPGTFLDHRLEEIPYSEFINKELILFSMADNV-RSIPSIADGLKPGQRKVIWGCFKRKL- 787

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--I 121
                 K A++VG +      H HG+ S+  +++ LAQ +       L+S  G +G   I
Sbjct: 788 --KKEIKVAQLVGYISEHAAYH-HGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREI 844

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLAN 178
            G   AA RY       +   I    D    D    Y   ++   EP  +    P +L N
Sbjct: 845 GGKDHAAPRYIFTNAKSITRAIYHPFD----DPLLNYLKDDDVPIEPEWYMPTVPMVLIN 900

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL-LEYIIGPDFPTGG 230
           G  GI  G +T+IP +N  +I      ++   E            G   PTG 
Sbjct: 901 GAEGIGTGWSTNIPPYNPVDIVANLRRMMKEEEPEPMTPWWRGFKGEVRPTGK 953


>gi|121308839|dbj|BAF43524.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1569

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 19/233 (8%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++  ++ +     + +  + ++++    R+IP + DG KP  R++I    +  L 
Sbjct: 745 KPGTFLDHRLEEIPYSEFINKELILFSMADNV-RSIPSIADGLKPGQRKVIWGCFKRKL- 802

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--I 121
                 K A++VG +      H HG+ S+  +++ LAQ +       L+S  G +G   I
Sbjct: 803 --KKEIKVAQLVGYISEHAAYH-HGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREI 859

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLAN 178
            G   AA RY       +   I    D    D    Y   ++   EP  +    P +L N
Sbjct: 860 GGKDHAAPRYIFTNAKSITRAIYHPFD----DPLLNYLKDDDVPIEPEWYMPTVPMVLIN 915

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL-LEYIIGPDFPTGG 230
           G  GI  G +T+IP +N  +I      ++   E            G   PTG 
Sbjct: 916 GAEGIGTGWSTNIPPYNPVDIVANLRRMMKEEEPEPMTPWWRGFKGEVRPTGK 968


>gi|57898980|dbj|BAD86854.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1572

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 19/233 (8%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++  ++ +     + +  + ++++    R+IP + DG KP  R++I    +  L 
Sbjct: 745 KPGTFLDHRLEEIPYSEFINKELILFSMADNV-RSIPSIADGLKPGQRKVIWGCFKRKL- 802

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--I 121
                 K A++VG +      H HG+ S+  +++ LAQ +       L+S  G +G   I
Sbjct: 803 --KKEIKVAQLVGYISEHAAYH-HGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREI 859

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLAN 178
            G   AA RY       +   I    D    D    Y   ++   EP  +    P +L N
Sbjct: 860 GGKDHAAPRYIFTNAKSITRAIYHPFD----DPLLNYLKDDDVPIEPEWYMPTVPMVLIN 915

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL-LEYIIGPDFPTGG 230
           G  GI  G +T+IP +N  +I      ++   E            G   PTG 
Sbjct: 916 GAEGIGTGWSTNIPPYNPVDIVANLRRMMKEEEPEPMTPWWRGFKGEVRPTGK 968


>gi|195580167|ref|XP_002079927.1| Top2 [Drosophila simulans]
 gi|194191936|gb|EDX05512.1| Top2 [Drosophila simulans]
          Length = 1133

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 80/453 (17%), Positives = 158/453 (34%), Gaps = 40/453 (8%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDS 97
            ER+IP L DG KP  R+++    +          K A++ G V  +   H HG+ S+  +
Sbjct: 692  ERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 747

Query: 98   LVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            +V LAQ F       L+  +G FG     G   A+ RY    M+ +  LI   +D+  +D
Sbjct: 748  IVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLD 807

Query: 154  FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
            ++   + +  EP+ +    P +L NG  GI  G +T I ++N +EI      +I+  E  
Sbjct: 808  YQVD-DGQKIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMNNLRKMINGQEPV 866

Query: 214  IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            +                   ++    +E    GR  +       +         + ++E+
Sbjct: 867  VMHP--------------WYKNFLGRIEYVSDGR--YVQTGNLQIL----HGNRLEISEL 906

Query: 274  PYQVQKSRLIEKIAELIIAKRIPL------LEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
            P  V      E + E +      +       ++   ++     I   P            
Sbjct: 907  PVGVWTQNYKENVLEALSNGTEKVKAVVSEYKEYHTDTTVRFVISFAPGEFERIRAEEGG 966

Query: 328  SIFMLSDMETRFPLNMNVLSMGRVPQVMPL-DGILKEWLAHRREVLFRRSSFRMQAIDRR 386
               +     T     M+        +  P    ILKE+   RRE   RR  F +  +  +
Sbjct: 967  FHRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILKEFYKLRREYYARRRDFLVGQLTAQ 1026

Query: 387  VEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             + L  +   I      +++   +        ++ R    +   +    +++      +E
Sbjct: 1027 ADRLSDQARFILEKCEKKLVVENKQRKAMCDELLKRGYRPDPVKEWQRRIKMEDAEPADE 1086

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
               + E        +         ++ + ++  
Sbjct: 1087 EDDEEEEAAPSVSSKAKKEKEADPEKAFKKLTD 1119


>gi|195345101|ref|XP_002039114.1| Top2 [Drosophila sechellia]
 gi|194134244|gb|EDW55760.1| Top2 [Drosophila sechellia]
          Length = 1448

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 80/453 (17%), Positives = 159/453 (35%), Gaps = 40/453 (8%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDS 97
            ER+IP L DG KP  R+++    +          K A++ G V  +   H HG+ S+  +
Sbjct: 692  ERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 747

Query: 98   LVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            +V LAQ F       L+  +G FG     G   A+ RY    M+ +  LI   +D+  +D
Sbjct: 748  IVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLD 807

Query: 154  FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
            ++   + +  EP+ +    P +L NG  GI  G +T I ++N +EI      +I+  E  
Sbjct: 808  YQVD-DGQKIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMNNLRKMINGQEPV 866

Query: 214  IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            +                   ++    +E    GR  +       +         + ++E+
Sbjct: 867  VMHP--------------WYKNFLGRIEYVSDGR--YIQTGNLQIL----HGNRLEISEL 906

Query: 274  PYQVQKSRLIEKIAELIIAKRIPL------LEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
            P  V      E + E +      +       ++   ++     I   P            
Sbjct: 907  PVGVWTQNYKENVLEALSNGTEKVKAVVSEYKEYHTDTTVRFVISFAPGEFERIRAEEGG 966

Query: 328  SIFMLSDMETRFPLNMNVLSMGRVPQVMPL-DGILKEWLAHRREVLFRRSSFRMQAIDRR 386
               +     T     M+        +  P    ILKE+   RRE   RR  F +  +  +
Sbjct: 967  FHRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILKEFYKLRREYYARRRDFLVGQLTAQ 1026

Query: 387  VEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             + L  +   I      +++   +        ++ R    +   +    +++    + +E
Sbjct: 1027 ADRLSDQARFILEKCEKKLVVENKQRKAMCDELLKRGYRPDPVKEWQRRIKMEDAEQADE 1086

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
               + E        +         ++ + ++  
Sbjct: 1087 EDDEEEEAAPSVSSKAKKEKEADPEKAFKKLTD 1119


>gi|308483878|ref|XP_003104140.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
 gi|308258448|gb|EFP02401.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
          Length = 1165

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/462 (17%), Positives = 174/462 (37%), Gaps = 38/462 (8%)

Query: 10   NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +LV++    +S +  ++ + + + +    +R+IP L DG KP  R+I+  +  M     
Sbjct: 686  ESLVDDGKTELSYKEFIDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTLLNM---DE 741

Query: 70   AAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
            +   K +++ G V  +   H HG++S+  +++R+ Q F      PL+   G FG     G
Sbjct: 742  STEMKVSQLAGAVAHRQSYH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGG 800

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
            + AA+ RY    +     L+    D+D  + R        EP       P +L NGT GI
Sbjct: 801  NDAASARYIFTSLASTTRLLFPHADDDLYEKRI-EEGLVVEPRWLCPIIPLILVNGTEGI 859

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T I + N  ++ +     ID+ E    ++  Y    D+      V S++ I    
Sbjct: 860  GTGWSTKIVNRNAIDVIDGIRRKIDSVEGE-HEIQPYY--EDYRGKIEAVTSKKFITTGK 916

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                   R  A           + I ++E+P ++  S+  EK+++++    I    +   
Sbjct: 917  IHLSRPERKNAST---------FSIEISELPIEIWTSKYKEKLSKIVENLPIVEFSERHT 967

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP-LDGILK 362
            E   + R+ +  K            +     + +    N  +     + +    +  I  
Sbjct: 968  EKRVNFRLTVDRKKAGRFLQKTNSELLNFFKLRSSITENRVLFDKNGLLKEYKSISEIAS 1027

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL-------------NIDEIIAIIRN 409
            E+   RR++  +R   +    + +++ +   +                       ++   
Sbjct: 1028 EFFDVRRDLYEKRLKAQKDECEAKLKYVDNQIKFIDLVTNGTIDLRSMGRDQLESSLEEY 1087

Query: 410  EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
              +  P+     +  ++    +L + L  L   E  ++    
Sbjct: 1088 GLESDPLSSKTHNAKKSDYSYLLEMPLSRLTSDEMNRLTERR 1129


>gi|298712279|emb|CBJ26730.1| DNA topoisomerase II [Ectocarpus siliculosus]
          Length = 1809

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/438 (14%), Positives = 149/438 (34%), Gaps = 28/438 (6%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
             + T  + NV++V+    + +  + +++   K R+IP L DGFKP  R+++ +  +  L 
Sbjct: 678  KAGTHADYNVESVTYESFINKELILFSMEDNK-RSIPCLVDGFKPSQRKVLFSCFKRNL- 735

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K  ++ G V      H HG+ S+  ++  +AQ F       L++  G FG    
Sbjct: 736  --KKEIKVVQLAGYVSEHSAYH-HGETSLNGTITAMAQNFTGSNNLNLLTPGGQFGTRLM 792

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY    + + A  +    D+  + + D  +    EP  +    P +L NG+ 
Sbjct: 793  GGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDD-DGLSIEPEFYMPIIPLILVNGSD 851

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++++P+++  ++ E              ++  +  G  F         ++    
Sbjct: 852  GIGTGWSSNVPNYSPHDVIENLK--RRIKGDKFVEMQPWYKG--FAGSIEAKVGKKG--- 904

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                  G + VR              + +TE+P +       + +  L+        +D 
Sbjct: 905  ----FEGSYTVRGIAN----RIDDTTVEITELPVRKWTQDYKQFLESLLPGAEDAKSKDA 956

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            +       +              + +     +D    F + M++  +  + +   L    
Sbjct: 957  KGNGKGKGKGKGAADKDKSPTRCIKDFKENHTDTTVHFTVTMSMEDLDALEKGDGLYKFF 1016

Query: 362  KEWLAHRREVLFRRSSF-RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            K   +     +        ++  +    I++  +                          
Sbjct: 1017 KLESSVSTNNMVLFDQDGHLERYESPQHIMEEFITLRSEFYGRRKTSLLSKLQSEWSKLD 1076

Query: 421  FSLTENQVDAILNLRLRS 438
              +          +++ +
Sbjct: 1077 NKVRFILAVVEDRMQVNN 1094


>gi|297464681|ref|XP_002703368.1| PREDICTED: DNA topoisomerase II, beta isozyme, partial [Bos taurus]
          Length = 873

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/475 (16%), Positives = 163/475 (34%), Gaps = 34/475 (7%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF-- 105
           FKP  R+++    +          K A++ G V  +   H HG+Q++  ++V LAQ F  
Sbjct: 1   FKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTIVNLAQNFVG 56

Query: 106 VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
                L+   G FG     G  AA+ RY    ++ +A L+   VD++ + F    + +  
Sbjct: 57  SNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRV 115

Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223
           EP  +    P +L NG  GI  G A  +P+++ +EI      ++D  +            
Sbjct: 116 EPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPH---------- 165

Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283
           P  P       + + +      G+  + V     V +        +      QV K +++
Sbjct: 166 PMLPNYKNFKGTIQEL------GQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVL 219

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           E +      K   L+ D ++   +     +               +  +  ++T    N 
Sbjct: 220 EPMLN-GTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNS 278

Query: 344 NVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA--IDRRVEILKGLLIAYLN 399
            VL      + +   +  ILKE+   R      R  + +     +      +   I    
Sbjct: 279 MVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKI 338

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA--E 457
             +I    R++     ++V R   ++            +  +  + Q      +      
Sbjct: 339 QGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEESQNQHDDSSSDSGTPSG 398

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +    L  S      +   E+ + ++   +     +R++          A +++
Sbjct: 399 PDFNYILNMSLWSLTKEKVEELIKQRDAKGREVSDLKRKSPSDLWKEDLAAFVEE 453


>gi|124108759|gb|ABM90956.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/89 (59%), Positives = 72/89 (80%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFR 155
           AA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  AAMRYTEIRLAKIAHGLMADLEKETVDFV 89


>gi|121511874|gb|ABM55388.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
 gi|121511876|gb|ABM55389.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 94/258 (36%), Gaps = 17/258 (6%)

Query: 512 QAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  EP+ V I++ G+            K       A+   + D ++    ++T D +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 564 LLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           + ++  G+ Y L    +        G+A+  LI+L  ++ I+       +D +  L+  +
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRADEKIMAIIPTPDFDESKSLVFFT 120

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSID 676
             G       +E       G   + +   +++           ++ +     + + F ++
Sbjct: 121 RNGVIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELE 180

Query: 677 QIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +  +  R  +GVR   +K D  I         E    +  + +   +        L  R 
Sbjct: 181 KTRDQGRSTRGVRGIKFKIDTDIVVDADVIDNEEQEILTVSEKGIGKRTTIEEYRLTNRA 240

Query: 735 GVGSLVPKGFPRSGKFLS 752
           G G +  K  P++G  + 
Sbjct: 241 GSGVIAMKLSPKTGNIVG 258


>gi|124108687|gb|ABM90920.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108713|gb|ABM90933.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108717|gb|ABM90935.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108749|gb|ABM90951.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108751|gb|ABM90952.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108769|gb|ABM90961.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108771|gb|ABM90962.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 88

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/88 (59%), Positives = 71/88 (80%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFR 155
           A RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFV 88


>gi|83367166|gb|ABC17642.1| putative DNA topoisomerase IIbeta [Trypanosoma brucei]
 gi|261335184|emb|CBH18178.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1465

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/536 (18%), Positives = 181/536 (33%), Gaps = 57/536 (10%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            N + VS    + +  + ++++   ER+IP + DG KP  R+I+ +  +  L       K 
Sbjct: 700  NARDVSYSEFVHKELILFSVAD-CERSIPSVVDGLKPGQRKIMFSAFKRNLV---RSLKV 755

Query: 76   ARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAY 129
            AR  G V      H HG+QS+  ++V LAQ +      PL+   G FG     G   AA 
Sbjct: 756  ARFAGYVSEHAAYH-HGEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTRLQGGKDHAAG 814

Query: 130  RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
            RY   R+T +A  I    D+  V++RD  +    EP  +    P +L NGT+GI  G AT
Sbjct: 815  RYISTRLTDIARRIYHPSDDFIVEYRDD-DGLSVEPFYYVPVIPMVLVNGTAGIGTGFAT 873

Query: 190  SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            +IP+++  ++ +    L+   E+   K                       +E    G+  
Sbjct: 874  NIPNYSPLDVIDNLNRLLSGEELQPMKP--------------WYFGFTGTIEEREKGK-- 917

Query: 250  FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            F       V   G     + +TE+P      +  + + +L   + +    +   +   D 
Sbjct: 918  FVSSGCATVRPDGV----VHITELPIGTWTQQYKKFLEDLREREIVIQYREHNTDVTVDF 973

Query: 310  RIVLFP-KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
             + + P   R       +E    L   E     N+         ++              
Sbjct: 974  EVFIHPEVLRQWVAQGCVEERLQL--REYIHATNIIAFDREG--KITKYLDAESVLKEFY 1029

Query: 369  REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA----IIRNEDKPKPVMVSRFSLT 424
               L   +  R   +++       L      ++E+I     + R   K     + +   T
Sbjct: 1030 LVRLEYYARRREFLLEQLQRAALKLENMVRFVNEVIDGTFIVTRRSMKDVLKDLKQRGYT 1089

Query: 425  ENQVDAILNLRLRSLRKLEEYQ---------IKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
                     +   ++   E+            + E   L  +           ++     
Sbjct: 1090 PFPPQQKKKMSSTTIVDEEDNDGARKILPDVFEFESVPLCEQVIGKMLCTAEPEEINMW- 1148

Query: 476  ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
               + E   +      L  R             T ++ M+ K    +  S++   R
Sbjct: 1149 KGVLVEYDYL------LSLRMVDLTVEMAMYFRTKREQMLNKHNFVLSASSKDLWR 1198


>gi|321268210|gb|ADW78913.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 98

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/96 (54%), Positives = 73/96 (76%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++E I
Sbjct: 1   GKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEI 60

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +  ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  MADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 96


>gi|312069494|ref|XP_003137708.1| TOPoisomerase family member [Loa loa]
 gi|307767126|gb|EFO26360.1| TOPoisomerase family member [Loa loa]
          Length = 1485

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 157/390 (40%), Gaps = 37/390 (9%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            VS +  + +  + ++ +   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 742  VSFKDFVNKELVLFSNAD-NERSIPSLVDGLKPGQRKVLFTCFK---RADKKEVKVAQLA 797

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  ++V LAQ +       L+   G FG     G  +A+ RY  
Sbjct: 798  GAVGEMSAYH-HGEASLMSTIVNLAQDYVGSNNINLLLPIGQFGTRLQGGKDSASPRYIF 856

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
             ++  V   +   VDE+ + F      +  EP  +    P +L NG  GI    +T IP+
Sbjct: 857  TQLNPVTRALFPIVDENVLRFLF-EENQRIEPEWYCPIIPTVLVNGAEGIGTAWSTKIPN 915

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            +N +EI +    L              I G +  +     ++    +E     R      
Sbjct: 916  YNPREIVDNMRRL--------------IRGEEPKSLTPWFKNFRGTIEKLDDSR----YI 957

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVR 310
                +  +   +  I +TE+P +       E + E +     K+ PL++D ++   +   
Sbjct: 958  CSGEIALLSDDT--IEITELPIRTWTQNYKETVLEPMLEGSDKQPPLIQDFKEYHTDTTV 1015

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGILKEWLAHR 368
              +   N +   +  ME +  +  +++   ++  VL    G + +   ++ I KE+   R
Sbjct: 1016 KFVVKMNAAKLREAEMEGLHKIFKLQSAINISSMVLFDPLGCLRRFPNVEEICKEFFEIR 1075

Query: 369  REVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
            ++    R +F+   +  + E L       L
Sbjct: 1076 KKKYIERKAFQEGMLRAQSERLSNQARFIL 1105


>gi|90017824|gb|ABD83868.1| topoisomerase IV subunit A [Haemophilus sp. COAD591]
          Length = 99

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 71/99 (71%), Gaps = 1/99 (1%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYT
Sbjct: 1   KSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           E+R+++++E++L  + +  VD++  ++   +EP   P++
Sbjct: 61  ESRLSKISEILLSELGQGTVDYQSNFDGTLAEPQYLPAR 99


>gi|22094466|gb|AAM91912.1|AF498912_1 gyrase A [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 94

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/91 (57%), Positives = 73/91 (80%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG
Sbjct: 4   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFG 63

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           +IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 64  SIDGDSAAAMRYTEIRLAKIAHELMADLEKE 94


>gi|5453246|gb|AAD43495.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 81

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +YD++VR+AQ F  RYPL+ G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|295315175|gb|ADF97675.1| gyrase subunit A [Campylobacter coli]
 gi|295315183|gb|ADF97679.1| gyrase subunit A [Campylobacter coli]
 gi|295315199|gb|ADF97687.1| gyrase subunit A [Campylobacter coli]
 gi|295315205|gb|ADF97690.1| gyrase subunit A [Campylobacter coli]
 gi|295315207|gb|ADF97691.1| gyrase subunit A [Campylobacter coli]
 gi|295315209|gb|ADF97692.1| gyrase subunit A [Campylobacter coli]
 gi|295315215|gb|ADF97695.1| gyrase subunit A [Campylobacter coli]
          Length = 84

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/84 (67%), Positives = 71/84 (84%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSA 126
           Q F  RYP I GQGNFG+IDGD A
Sbjct: 61  QDFSMRYPSIDGQGNFGSIDGDGA 84


>gi|258569355|ref|XP_002543481.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
 gi|237903751|gb|EEP78152.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
          Length = 1704

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/397 (20%), Positives = 155/397 (39%), Gaps = 50/397 (12%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V+ +S    + +  + ++++    R+IP + DG KP  R++++AM +  + 
Sbjct: 773  KPGTYLDHSVEKISYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYAMFKRNV- 830

Query: 68   FGAAFKKSARIV---GEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN 120
                 +K A++V   G V G      HG+ S+  ++V LAQ F        +   GNFG+
Sbjct: 831  -----RKDAKVVELGGYVSGMTGYQ-HGEVSLQQTIVGLAQTFVGSNNVNCLEPSGNFGS 884

Query: 121  I--DGDSAAAYRYTEARMTQVAELILQGVD----EDAVDFRDTYNEEDSEPVVFPSKFPN 174
                G   A+ RY   R++  A  I    D    +  VD     + +  EP VF    P 
Sbjct: 885  RLQGGSDCASARYIHTRLSPFARRIFSTADDPLLKHNVD-----DGKIIEPEVFVPVVPL 939

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
            +L NG  GI  G +TSIP+ N ++I +    L+D     +  +  +  G    TG +   
Sbjct: 940  VLINGADGIGTGWSTSIPNFNPEDIVDNLKRLMDG--EPVVPMKPWFRG---FTGEVTAA 994

Query: 235  SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
                              R ++       G + + +TE+P +       +K+ E+I A++
Sbjct: 995  GD----------------RYKFSGIIKQTGDYEVEITELPIRTWTQDFKDKLEEIIKAEK 1038

Query: 295  IPLL-EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
             P   +D +D +       +   +       + + +     +      +  V        
Sbjct: 1039 APSFIKDYKDYNTHSKVHFIIQMDEKHMKKAVEDGLEERFKLSRTITTSNMVAFDAEG-- 1096

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
             +      ++ L     V  R    R Q +  ++   
Sbjct: 1097 RITKYNTAEDILEAFFAVRIRFYEKRKQFMLAQLHKE 1133


>gi|5453238|gb|AAD43487.1| DNA gyrase subunit A [Staphylococcus warneri]
          Length = 81

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +Y+++VR+AQ F  RYPL+ G
Sbjct: 61  IYEAMVRMAQEFSYRYPLVDG 81


>gi|7682360|gb|AAF67235.1|AF144784_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|7682362|gb|AAF67236.1|AF144785_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 92

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/91 (53%), Positives = 71/91 (78%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  RMSKIALEMLRDINKNTVDFVDNYDANEREP 91


>gi|118139696|gb|ABK63294.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/89 (64%), Positives = 72/89 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + +   +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDG
Sbjct: 1   LSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAV 152
           D+AAA RYTE RMT++AE  L+ +D+D V
Sbjct: 61  DNAAAMRYTEVRMTRIAEEALRDLDKDTV 89


>gi|122893191|gb|ABM67552.1| DNA gyrase [Staphylococcus intermedius]
          Length = 79

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 65/79 (82%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 101 LAQPFVQRYPLISGQGNFG 119
           +AQ F  RYPL+ GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|121511882|gb|ABM55392.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 93/258 (36%), Gaps = 17/258 (6%)

Query: 512 QAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  EP+ V I++ G+            K       A+   + D ++    ++T D +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 564 LLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           + ++  G+ Y L    +        G+A+  LI+L  ++ I+       +D +  L+  +
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAIIPTPDFDESKSLVFFT 120

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSID 676
             G       +E       G   + +   +++           ++ +     + + F ++
Sbjct: 121 RNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELE 180

Query: 677 QIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +  +  R  +GVR   +K D            E    +  + +   +        L  R 
Sbjct: 181 KTRDQGRSTRGVRGIKFKIDTDFVVDADVIDSEEQEILTVSEKGIGKRTTIEEYRLTNRA 240

Query: 735 GVGSLVPKGFPRSGKFLS 752
           G G +  K  P++G  + 
Sbjct: 241 GSGVIAMKLSPKTGNIVG 258


>gi|7682364|gb|AAF67237.1|AF144786_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 92

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/91 (54%), Positives = 71/91 (78%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM+++A  IL+ ++++ VDF D Y+  + EP
Sbjct: 61  RMSKIALEILRDINKNTVDFVDNYDANEREP 91


>gi|27542599|gb|AAO16900.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 73/90 (81%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           +IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|5121|emb|CAA27857.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 1431

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/542 (16%), Positives = 178/542 (32%), Gaps = 40/542 (7%)

Query: 19   AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             + +   +    + ++++    R+IP + DG KP  R++++   +  L       K +R+
Sbjct: 668  QIPIDDFINRELIQFSMADNI-RSIPSVVDGLKPGQRKVVYYCFKRNLVHET---KVSRL 723

Query: 79   VGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYT 132
             G V      H HG+ S+  ++V LAQ F       L+   G FG     G +A+A RY 
Sbjct: 724  AGYVASETAYH-HGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGTRSEGGKNASASRYL 782

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A ++    D+  ++++     +  EP  +    P +L NG  GI  G +T IP
Sbjct: 783  NTALSPLARVLFNSNDDQLLNYQ-NDEGQWIEPEYYVPILPMVLVNGAEGIGTGWSTFIP 841

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            ++N ++I      +++                            E +   YR  RG    
Sbjct: 842  NYNPKDITANLRHMLNGE------------------------PLEIMTPWYRGFRGSITK 877

Query: 253  RA--RWCVEEV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             A  R+ +  +    G   + +TE+P +     + E +   ++         +  ES   
Sbjct: 878  VAPDRYKISGIINQIGENKVEITELPIRFWTQDMKEYLEAGLVGTEKIRKFIVDYESHHG 937

Query: 309  VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              IV F    +        +  +    +       + +        +     +++ L   
Sbjct: 938  EGIVHFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSVEDILTEF 997

Query: 369  REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
             EV  R    R + +   +E              +I         K        L E + 
Sbjct: 998  YEVRLRTYQRRKEHMVNELEKRFDRFSNQARFIHMIIEGELVVSKKKKKDLIVELKEKKF 1057

Query: 429  DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
              I   +   L  LE     +E +      +  DS   +        +       E+  K
Sbjct: 1058 QPISKPKKGHLVDLEVENALAEEEQSGDVSQDEDSDAYNYLLSMPLWSLTYERYVELLKK 1117

Query: 489  STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
              ++        + +  +         E     V+   +  +   +  S D      K+ 
Sbjct: 1118 KDEVMAELDALIKKTPKELWLHDLDAFEHAWNKVMDDIQREMLEEEQSSRDFVNRTKKKP 1177

Query: 549  DS 550
              
Sbjct: 1178 RG 1179


>gi|209879055|ref|XP_002140968.1| DNA gyrase/topoisomerase IV, A subunit family protein
            [Cryptosporidium muris RN66]
 gi|209556574|gb|EEA06619.1| DNA gyrase/topoisomerase IV, A subunit family protein
            [Cryptosporidium muris RN66]
          Length = 1645

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 99/241 (41%), Gaps = 34/241 (14%)

Query: 5    NISNSNTLVEENVKAVSLRFALEERYLAYALSTI---------------------KERAI 43
            +++ S    E+      +    E  Y+ Y++  I                       R+I
Sbjct: 771  DMAFSKKRTEDR--KKWIESYQEGTYIDYSMDNICRSLRYRDFIDKELVLFSRYDTARSI 828

Query: 44   PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRL 101
            P++ DG KP  R++++++ +  L+      K A++ G V      H HG+ S+  ++V +
Sbjct: 829  PNVIDGLKPGQRKVLYSVFKKKLNNE---MKVAQLAGYVAEHSAYH-HGEASLQSTIVNM 884

Query: 102  AQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
            AQ F       L+   G FG+    G  A+A RY   +++     I    D+  + +   
Sbjct: 885  AQDFVGSNNLNLLQPCGQFGSRKEGGKDASAARYIFTKLSTWTRYIFPEADDPLLIY-LQ 943

Query: 158  YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
             + +  EP+ +    P +L NG  GI  G + S+P++N ++I       +    +     
Sbjct: 944  DDGQQIEPLFYVPIIPMVLVNGADGIGTGWSCSVPNYNPKDIINNLKRALRGDIMMPMTP 1003

Query: 218  L 218
             
Sbjct: 1004 W 1004


>gi|195031277|ref|XP_001988321.1| GH10628 [Drosophila grimshawi]
 gi|193904321|gb|EDW03188.1| GH10628 [Drosophila grimshawi]
          Length = 1486

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 153/430 (35%), Gaps = 33/430 (7%)

Query: 18   KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            K VS    +    + ++ +   ER+IP L DG KP  R+++    +          K A+
Sbjct: 688  KQVSYSDFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVKVAQ 743

Query: 78   IVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRY 131
            + G V  +   H HG+ S+  ++V LAQ +       L+  +G FG     G   A+ RY
Sbjct: 744  LSGSVAEMSAYH-HGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARY 802

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
                M+ +  LI   +D+  + ++ T + +  EP+ +    P +L NG  GI  G +T I
Sbjct: 803  IFTLMSPLTRLIYHPLDDPLLQYQ-TDDGQRIEPLWYIPIIPMVLVNGAEGIGTGWSTKI 861

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             ++N +E+      +I+  E  +           +           +       G     
Sbjct: 862  ANYNPRELINNLRRMINGEEPLLMHP--------WYKNFTGNMDYVNDGRYVHSGNIQML 913

Query: 252  VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
               R  + E+  G W         Q  K  ++E ++      +  + E     +   VR 
Sbjct: 914  SDNRIEITELPIGVW--------TQTYKENVLEALSNGTEKVKAIVSEYREFHTDTTVRF 965

Query: 312  VLFPKNRSLDP-DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHR 368
            V+       +           +  + +    N          + +      IL E+   R
Sbjct: 966  VVSFNPGEFERLRSENGGFHRVFKLSSSISTNQMHAFDDSNCLRRFSSPKDILLEFYKLR 1025

Query: 369  REVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             E   RR  + +  +  + + L  +   I      +++   +        ++ R    + 
Sbjct: 1026 LEYYNRRKDYLVGQLTAQADRLSDQARFILEKCEKKLVVENKQRKVMIDELIKRGYRPDP 1085

Query: 427  QVDAILNLRL 436
              +    +++
Sbjct: 1086 VKEWQRRIKI 1095


>gi|261599205|gb|ACX85665.1| ParC [Streptococcus pneumoniae]
          Length = 106

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 42/106 (39%), Positives = 71/106 (66%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
              F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD
Sbjct: 1   KHTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
             AA RYTEAR++++A  +LQ ++++ V F   +++ + EP   P+
Sbjct: 61  PPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTALPA 106


>gi|19112597|ref|NP_595805.1| DNA topoisomerase II [Schizosaccharomyces pombe 972h-]
 gi|12644105|sp|P08096|TOP2_SCHPO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|3393015|emb|CAA20107.1| DNA topoisomerase II [Schizosaccharomyces pombe]
          Length = 1485

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/398 (19%), Positives = 150/398 (37%), Gaps = 44/398 (11%)

Query: 19   AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             + +   +    + ++++    R+IP + DG KP  R++++   +  L       K +R+
Sbjct: 722  QIPIDDFINRELIQFSMADNI-RSIPSVVDGLKPGQRKVVYYCFKRNLVHET---KVSRL 777

Query: 79   VGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYT 132
             G V      H HG+ S+  ++V LAQ F       L+   G FG     G +A+A RY 
Sbjct: 778  AGYVASETAYH-HGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGTRSEGGKNASASRYL 836

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A ++    D+  ++++     +  EP  +    P +L NG  GI  G +T IP
Sbjct: 837  NTALSPLARVLFNSNDDQLLNYQ-NDEGQWIEPEYYVPILPMVLVNGAEGIGTGWSTFIP 895

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            ++N ++I      +++                            E +   YR  RG    
Sbjct: 896  NYNPKDITANLRHMLNGE------------------------PLEIMTPWYRGFRGSITK 931

Query: 253  RA--RWCVEEV--GRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRIPLLEDIRDESA 306
             A  R+ +  +    G   + +TE+P +     + E +    +   K    + D      
Sbjct: 932  VAPDRYKISGIINQIGENKVEITELPIRFWTQDMKEYLEAGLVGTEKIRKFIVDYESHHG 991

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGILKEW 364
            E           +   + L ES+ +   +      +  +     GR+ +   ++ IL E+
Sbjct: 992  EGNVHFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSVEDILTEF 1051

Query: 365  LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
               R     RR    +  +++R +           I E
Sbjct: 1052 YEVRLRTYQRRKEHMVNELEKRFDRFSNQARFIHMIIE 1089


>gi|60651666|gb|AAX32844.1| GyrA [Riemerella anatipestifer]
          Length = 83

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 66/83 (79%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+++ M  +G+     + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP 
Sbjct: 1   PVHRRVLYGMYGLGVFSNKKYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQ 60

Query: 112 ISGQGNFGNIDGDSAAAYRYTEA 134
           + GQGNFG++DGD  AA RYTEA
Sbjct: 61  VDGQGNFGSMDGDPPAAMRYTEA 83


>gi|22094464|gb|AAM91911.1|AF498911_1 gyrase A [Salmonella enterica subsp. enterica serovar Choleraesuis]
          Length = 97

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/90 (57%), Positives = 73/90 (81%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDED 150
           IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKE 90


>gi|63849746|emb|CAI72577.1| gyrA protein [Salmonella enterica subsp. enterica serovar Newport]
 gi|63849750|emb|CAI72578.1| gyrA protein [Salmonella enterica subsp. enterica serovar
           Senftenberg]
          Length = 83

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 65/83 (78%)

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ +
Sbjct: 1   VGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 60

Query: 139 VAELILQGVDEDAVDFRDTYNEE 161
           +A  ++  ++++ VDF D Y+  
Sbjct: 61  IAHELMADLEKETVDFVDNYDGT 83


>gi|313192260|emb|CBY05938.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/98 (53%), Positives = 75/98 (76%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+V G+ HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 3   RIGHDWNQAYKKSARVVGDVFGEYHPHGDSAVYVTIVRMAQPFSLRYMLVDGQGNFGSID 62

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           GDSAAA RYTE R+ ++A  ++  ++++ VDF D  ++
Sbjct: 63  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDKNDD 100


>gi|5453230|gb|AAD43479.1| DNA gyrase subunit A [Staphylococcus simulans]
          Length = 81

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +Y+++VR+AQ F  RYPL+ G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|124108701|gb|ABM90927.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/89 (58%), Positives = 72/89 (80%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRD 156
           A RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFVD 89


>gi|311993263|ref|YP_004010129.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage CC31]
 gi|284178101|gb|ADB81767.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage CC31]
          Length = 460

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 92/481 (19%), Positives = 173/481 (35%), Gaps = 41/481 (8%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D ++         +    L+  ++     +A+ T++ RAIP+L DGFKPV R +I    +
Sbjct: 6   DMMAKQVDDSIGQLNLRDLQSIIDNEAKEFAIYTVENRAIPNLIDGFKPVQRFVIARALD 65

Query: 64  MGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +       F K A + G V  +G  H HG+ S  D+   +A  +   YPL+ GQGNFG+ 
Sbjct: 66  LSRGNKEKFHKLASVAGGVADLG-YH-HGEGSAQDAGALMANTWNNNYPLLDGQGNFGSR 123

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP--VVFPSKFPNLLANG 179
               AAA RY   R++     + +       +    + +++  P     P   P +L NG
Sbjct: 124 LVQKAAASRYIFCRISDNFRKVYKD-----TEIAPEHKDKEHVPPAFYLP-IIPTVLLNG 177

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIA G AT I  H+ + + E     +        ++      P F             
Sbjct: 178 VQGIATGYATKILPHSFESVVECTKLALQGKLDKEPEVQI----PQFRG----------- 222

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E  RL  G    R  +        +  + ++EIP +  +   +EK+ E ++ K      
Sbjct: 223 -EVVRLEDGSIECRGLYKFT----SASQMYISEIPAKFDRETYVEKVLEPMVDKNFISYV 277

Query: 300 DIRDESAEDVRIVL--FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           D   ++    ++           D     E I     +  +    + V+      ++   
Sbjct: 278 DDCSKTGFGFKVKFKKDYMLGECDEKYRHEKIMRDFKLVEKMSQFIVVIDENG--KLNDK 335

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
                E + H  EV       R++   +  +    L +A     + +       + K   
Sbjct: 336 FQSSSELIKHFVEVRKTYIVKRIEHKIKECDEAFKLALAKAMFIKEVIEGSIVIQGKTRK 395

Query: 418 VSRFSLTENQ-----VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                L          D ++++ +  +   E  ++  +  +L AE +         +   
Sbjct: 396 QLTSELESRPTYAPFADKLVSMNIYHITSDEAKKLAQQAKDLKAELKYWQETTPETEYMK 455

Query: 473 N 473
           +
Sbjct: 456 D 456


>gi|195164670|ref|XP_002023169.1| GL21103 [Drosophila persimilis]
 gi|194105254|gb|EDW27297.1| GL21103 [Drosophila persimilis]
          Length = 1451

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 61/283 (21%), Positives = 112/283 (39%), Gaps = 32/283 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S    +    + ++ +   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 672 ISYSDFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVKVAQLS 727

Query: 80  GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
           G V  +   H HG+ S+  ++V LAQ +       L+  +G FG     G   A+ RY  
Sbjct: 728 GSVAEMSAYH-HGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARYIF 786

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
             M+ +  LI   +D+  ++++ T + +  EP+ +    P +L NG  GI  G +T I +
Sbjct: 787 TLMSPLTRLIYHPLDDPLLEYQ-TDDGQRIEPLWYLPIIPMVLVNGAEGIGTGWSTKIAN 845

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           +N +EI      +I+  E                      ++    +E    GR  +   
Sbjct: 846 YNPREITRNLRRMINEEEPLPMHP--------------WYKNFTGRMEYISDGR--YVHT 889

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
               +         + +TE+P  V      E + E +      
Sbjct: 890 GNIQILPG----ERVEITELPIGVWTQNYKENVLEALSNGTEK 928


>gi|27542593|gb|AAO16897.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 73/90 (81%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           +IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|27542579|gb|AAO16890.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 87

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 71/87 (81%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNTAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVD 153
           AA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEKETVD 87


>gi|198473349|ref|XP_001356262.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
 gi|198139416|gb|EAL33325.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
          Length = 1450

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 61/283 (21%), Positives = 112/283 (39%), Gaps = 32/283 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S    +    + ++ +   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 672 ISYSDFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVKVAQLS 727

Query: 80  GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
           G V  +   H HG+ S+  ++V LAQ +       L+  +G FG     G   A+ RY  
Sbjct: 728 GSVAEMSAYH-HGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARYIF 786

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
             M+ +  LI   +D+  ++++ T + +  EP+ +    P +L NG  GI  G +T I +
Sbjct: 787 TLMSPLTRLIYHPLDDPLLEYQ-TDDGQRIEPLWYLPIIPMVLVNGAEGIGTGWSTKIAN 845

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           +N +EI      +I+  E                      ++    +E    GR  +   
Sbjct: 846 YNPREITRNLRRMINEEEPLPMHP--------------WYKNFTGRMEYISDGR--YVHT 889

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
               +         + +TE+P  V      E + E +      
Sbjct: 890 GNIQILPG----ERVEITELPIGVWTQNYKENVLEALSNGTEK 928


>gi|313192268|emb|CBY05942.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 53/94 (56%), Positives = 72/94 (76%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+V GK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 2   RIGHDWNKAYKKSARVVGDVFGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           GDSAAA RYTE R+ ++A  ++  + ++ VDF D
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLKKETVDFVD 95


>gi|159117354|ref|XP_001708897.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
 gi|30692178|gb|AAP33503.1| topoisomerase II [Giardia intestinalis]
 gi|157437011|gb|EDO81223.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
          Length = 1491

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 79/493 (16%), Positives = 172/493 (34%), Gaps = 36/493 (7%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKE--RAIPDLRDGFKPVHRRIIHAMSEM 64
            ++ +T ++ +   + +   +++  + Y    I+   RAIP L DG KP  R++++A  + 
Sbjct: 722  TDPDTYLDLSPTKIDITAFVDKELVLY---DIESNQRAIPSLMDGLKPGQRKVLYACFKR 778

Query: 65   GLDFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN 120
             L       K +++ G V  K   H HG+ S+  ++V +AQ F       L+   G FG+
Sbjct: 779  NLKTK---LKVSQLSGFVSDKAAYH-HGEASLNGTIVNMAQSFTGSNNIALLYPAGIFGS 834

Query: 121  --IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
                G  ++A RY    +  +A  +    D+  + +++  + +  EP  +    P +L N
Sbjct: 835  RARGGKDSSAPRYISTYLDPLARYLFPEPDDAIMQYKED-DGKVIEPFYYAPILPMVLIN 893

Query: 179  GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
            G+ GI  G +T+IP  +  ++  +    I       EK         +         +  
Sbjct: 894  GSDGIGTGFSTTIPQFDPLDMLHSIRLRIYGKTTRREKRTLKPFSNGWKGTMTHEYDKSG 953

Query: 239  IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
                       +R+   + V ++      I +T++P  V      E+I   +        
Sbjct: 954  K-------FVRWRMTGCFSVVDLKT----IQITDLPIGVWTESYREEIETWVK-----GN 997

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ED         ++    K ++        +    +  +  +         G  P +M + 
Sbjct: 998  EDAGTAKKPATKVSATTKGKAKLKGASGAAKEKPAAKDQLYDSVTGYY-KGIHPALMKVI 1056

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             +      +    L      R       V+I           D I+   + +   +P   
Sbjct: 1057 DMSDNNTVNIIVTLSDE-CARYLIGTSDVDIETCNTAGTARYDNIVKGFKLDGSIRP--S 1113

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            + +   E  +  + +   + +      ++         +   +D       ++   I   
Sbjct: 1114 NMWLYNERNMLCLYHTPFKIIDAFYAKRLDLYRVRRNNQIIDMDDRSLMLNEKARFIKLI 1173

Query: 479  IREVKEIFSKSTD 491
            I +   I +   D
Sbjct: 1174 IEDKLNIKNVPRD 1186


>gi|82654941|sp|P0C0Q9|GYRA_STAEP RecName: Full=DNA gyrase subunit A
 gi|240997|gb|AAB20672.1| DNA gyrase A [Staphylococcus epidermidis]
          Length = 94

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 44/92 (47%), Positives = 66/92 (71%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
            +KKSARIVG+V+GK HPHGD S+Y+++VR+A
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMA 94


>gi|195397652|ref|XP_002057442.1| GJ18099 [Drosophila virilis]
 gi|194141096|gb|EDW57515.1| GJ18099 [Drosophila virilis]
          Length = 1445

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 78/502 (15%), Positives = 162/502 (32%), Gaps = 52/502 (10%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            VS    +    + ++ +   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 674  VSYSDFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVKVAQLS 729

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+ S+  ++V LAQ F       L+  +G FG     G   A+ RY  
Sbjct: 730  GSVAEMSAYH-HGEMSLQMTIVNLAQNFVGSNNINLLEPRGQFGTRLTGGKDCASARYIF 788

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              M+ +  LI   +D+  + ++   + +  EP+ +    P +L NG  GI  G +T I +
Sbjct: 789  TLMSPLTRLIYHPLDDPLLQYQVD-DGQRIEPIWYIPIIPMVLVNGAEGIGTGWSTKIAN 847

Query: 194  HNVQEICEAALALIDNPEISIEKLL--------------------EYIIGPD-------F 226
            +N +E+      +I+  E+                             + PD        
Sbjct: 848  YNPRELISNLRRMINGEELLPLHPWYKNFQGSMDYVSDGRYVHSGNIQLLPDNRIEITEL 907

Query: 227  PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
            P G      +E+++E    G        +  + E         V  +           + 
Sbjct: 908  PVGVWTQNYKENVLEVLSNGTEKV----KAVISEYREYHTDTTVRFVVSFAPGEFERLRS 963

Query: 287  AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                  + + L   +                R   P  +++  + L      +    + L
Sbjct: 964  EPGGFHRVLKLSSSLSTNQMHAFDENN-CLRRFPSPKDILQEFYKL--RLEYYNRRKDYL 1020

Query: 347  SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
                  Q   L    +  L    + L   +  R   I+  ++              I   
Sbjct: 1021 VGQLTAQSDRLSDQARFILEKCEKKLTIENKQRKAMIEELIKRGYRPDPVKEWQRRIKME 1080

Query: 407  IRNEDKPKPVMVSRFSLTENQVDAIL------NLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                           + +       +          + L +++++     +   +  +E+
Sbjct: 1081 EAEAADDDDDEEDEGAESATTSSKKVKKEVDPEKAFQKLTEVKKFDYLLGMSMWMLTEER 1140

Query: 461  IDSLLNSGKQQWNQIACEIREV 482
             + LL     +  ++   I+++
Sbjct: 1141 KNELLKQRDLKLAELDNLIKKM 1162


>gi|5453236|gb|AAD43485.1| DNA gyrase subunit A [Staphylococcus epidermidis]
          Length = 81

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDFS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +Y+++VR+AQ F  RYPL+ G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|311993520|ref|YP_004010385.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Acj9]
 gi|295917477|gb|ADG60148.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Acj9]
          Length = 447

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 87/456 (19%), Positives = 160/456 (35%), Gaps = 38/456 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L   +      YA+ T++ RAIP+L DG KPV R +++   ++       F K 
Sbjct: 2   QLTDRELTQIINNEAKIYAMYTVENRAIPNLIDGLKPVQRFMLYRAIQLAKGKSDKFHKL 61

Query: 76  ARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           A + G V     H HG+ S  ++   +A  +   +P + GQGNFG+     AAA RY   
Sbjct: 62  ASVAGGVADAGYH-HGENSAQEAGALMANTWNNNFPFLDGQGNFGSRLVQQAAASRYIFC 120

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSE-PVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R+++    + +       +    + + +   P  +    P +L NG  GIA G +TSI  
Sbjct: 121 RVSENFNKVYKD-----TEIAPEHEDLEHLPPRFYLPIIPTVLLNGVRGIATGYSTSILP 175

Query: 194 HNVQEICEAA-LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           H+ + I      AL                G                 E Y      + +
Sbjct: 176 HDFESIVRCTEQALNGETVSMPTVAFPQFRG-----------------EVYCTEPNKYEL 218

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI-AELIIAKRIPLLEDIRDESAEDVRI 311
              +           + ++EIPYQ  +++ +EK+   L  A  I   +D   E       
Sbjct: 219 HGTYNFT----SKTQMYISEIPYQFDRAKYVEKVLDPLEDAGLITYDDDCSKEGFGFKIK 274

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
                    D   L E I     +  R   N+ V+      ++        + + H  +V
Sbjct: 275 FRKDYKLPTDVTELDEKIKRDFKLVERVSQNIVVIDENG--KLHDRFENSAQLVEHFVKV 332

Query: 372 LFRRSSFRM-QAIDRRVEILKGLLIAYLNIDEI----IAIIRNEDKPKPVMVSRFSLTEN 426
                  R+   I++     +      L I E+    I +   +       +++      
Sbjct: 333 RLSFVEKRIGFMIEKSKHAFELAYAKALFIREVTNEKIQVKGKKRSELKEELAQLPALAG 392

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
             D +L + +  + + E   +  +      + +   
Sbjct: 393 FEDQLLAMNIFHMTEDEMANLLKKAKEAKEQMDYWK 428


>gi|24020924|gb|AAN40857.1| ParC [Streptococcus mitis]
          Length = 102

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 71/102 (69%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN
Sbjct: 1   LYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
            G++DGD  AA RYTEAR++++A  +LQ +++  V F   ++
Sbjct: 61  NGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 102


>gi|27447212|gb|AAL99217.1| kinetoplast and nucleus-associated type II DNA topoisomerase [Bodo
            saltans]
          Length = 1247

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 167/451 (37%), Gaps = 33/451 (7%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            +++   +++  + +A +    RA+P   DG KP  R+I+ +    G    +   K +++ 
Sbjct: 673  LTIPTFVDKELIHFANAGNL-RALPSAVDGLKPSQRKILWSCFRRGNANES--LKVSQLS 729

Query: 80   GEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID--GDSAAAYRYTE 133
            G +      H HG+ S+  +++++AQ +       L+  +G FG+    G   AA RY  
Sbjct: 730  GYISEVSAFH-HGEMSLQQTIIKMAQDYVGSNNINLLEPEGQFGSRQHLGSDHAAARYIF 788

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
             +++ +A LI    D++ + F +    +  EP  +    P LL NG+ GI  G A ++  
Sbjct: 789  TKLSPLARLIFPKEDDELLQFVED-EGKYVEPRFYVPIIPMLLVNGSVGIGFGFACTVQM 847

Query: 194  HNVQEICEAALALI--DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            H+  ++      ++  + P  ++E L  + +G             E   E          
Sbjct: 848  HHPLDVVTVVRRMMRKNTPTQALEGLRPWAVGYSGSVVQKTTVDEEG-REVVSTTH---V 903

Query: 252  VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
               R+   +V  G   + V E+P+     +L  ++A+L    ++  + D    +  D  +
Sbjct: 904  AMGRFTTRKVK-GFPVVRVEELPWDRAIEQLRGRVAKLAEESKVLRIADYSGANHVDSDV 962

Query: 312  VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            VL         D       +  D      +  N         + PL   ++  +    E 
Sbjct: 963  VL-------AADSFASPREIEKDFLLTSNVANNAAVYNPEMVLSPLGESVESIVQWHYEQ 1015

Query: 372  LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-RFSLTENQVD- 429
                 + R +     +      L + L   E +     + +      +     +E ++  
Sbjct: 1016 RLAMYTKRKERQLLLLNTQLKKLKSTLTFTETLRSGDLDFRKMADENALVKQCSELKLHR 1075

Query: 430  ------AILNLRLRSLRKLEEYQIKSELDNL 454
                   +    +         ++K ++++ 
Sbjct: 1076 ENDSFDYLTRRPVTYFTNNNVEKLKRDIEHC 1106


>gi|195119011|ref|XP_002004025.1| GI19824 [Drosophila mojavensis]
 gi|193914600|gb|EDW13467.1| GI19824 [Drosophila mojavensis]
          Length = 1431

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 119/304 (39%), Gaps = 35/304 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS    +    + ++ +   ER+IP L DG KP  R+++    +          K A++ 
Sbjct: 673 VSYSDFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVKVAQLS 728

Query: 80  GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
           G V  +   H HG+ S+  ++V LAQ F       L+  +G FG     G   A+ RY  
Sbjct: 729 GSVAEMSAYH-HGEMSLQMTIVNLAQNFVGSNNINLLEPRGQFGTRLTGGKDCASARYIF 787

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
             M+ +  LI   +D+  + ++   + +  EP+ +    P +L NG  GI  G +T I +
Sbjct: 788 TLMSPLTRLIYHPLDDPLLQYQVD-DGQRIEPLWYIPIIPMVLVNGAEGIGTGWSTKIAN 846

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           +N +++      +I+N E                      ++    +E    GR  +   
Sbjct: 847 YNPRDMITNLRRMINNEEPLPLHP--------------WYKNFTGTMEYVSDGR--YVHS 890

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---LLEDIRDESAEDVR 310
               +         I +TE+P  V      E + E++         ++ D R+   +   
Sbjct: 891 GNVQILPDN----RIEITELPIGVWTQNYKENVLEVLSNGTEKVKAIISDYREYHTDTTV 946

Query: 311 IVLF 314
             + 
Sbjct: 947 RFVI 950


>gi|5453251|gb|AAD43500.1| DNA gyrase subunit A [Staphylococcus lugdunensis]
          Length = 81

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 65/81 (80%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +YD++VR+AQ F  RYPL++G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVNG 81


>gi|91079588|ref|XP_967653.1| PREDICTED: similar to topoisomerase II [Tribolium castaneum]
          Length = 1552

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 145/390 (37%), Gaps = 49/390 (12%)

Query: 18   KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            K+VS    +    + ++ +    R+IP L DG KP  R+++    +          K A+
Sbjct: 695  KSVSYTDFVNLELVLFSNADNI-RSIPCLVDGLKPGQRKVMFTCFKRN---DKREVKVAQ 750

Query: 78   IVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRY 131
            + G V  +   H HG+ S+  ++V LAQ F       L+  +G FG     G  +A+ RY
Sbjct: 751  LAGSVAEMSAYH-HGEVSLCMTIVNLAQNFVGSNNINLLEPRGQFGTRMAGGKDSASPRY 809

Query: 132  TEARMTQVAELILQGVDEDAV--DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
               +M+ +  +I    D+  +  +F    + +  EPV +    P +L NG  GI  G  T
Sbjct: 810  IFTKMSPLTRMIFNPSDDYLLKHEFE---DNQKIEPVWYIPIIPMVLVNGADGIGTGWMT 866

Query: 190  SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
             IP++N +E+ +   A++D  E +                 ++   +  I      G   
Sbjct: 867  KIPNYNPRELVKNIRAMLDQEEPT----------------NMVPWYKNFIGSIVDCGDNR 910

Query: 250  FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE----S 305
            +       +     G   + +TE+P         E + E ++     +   I+D     +
Sbjct: 911  YVASGEIAII----GDNRVEITELPIGTWTQNYKENVLEPLLHGSEKVKAVIQDYKEYNT 966

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               V+ ++      L+       +     +++    +   +                   
Sbjct: 967  DTTVKFIITFLPGQLETLENEAGLHKTFKLQSLISTSSMCVFDEL---------GCIRRY 1017

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
                ++L      R+    +R + L+G+L 
Sbjct: 1018 DSVTDILKDYYKLRLTMYQKRKDYLEGMLK 1047


>gi|302202600|gb|ADL09409.1| DNA topoisomerase II [Omphalotus nidiformis]
          Length = 1557

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 71/405 (17%), Positives = 139/405 (34%), Gaps = 37/405 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T +   +  +     + +  + ++++    R+IP + DG KP  R++I +  +  L 
Sbjct: 763  KPGTFLGHRLDEIPYSEFVNKELILFSMADNI-RSIPSIADGLKPDQRKVIWSCFKRNL- 820

Query: 68   FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                  K  ++VG V      H HGD S+  ++V LAQ F       L+   G +G  D 
Sbjct: 821  --KKEIKVIQLVGYVSEHSVYH-HGDASLTQTIVALAQDFVGSNNLNLLVPCGQYGTRDM 877

Query: 123  -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED-SEPVVFPSKFPNLLANGT 180
             G   A+ RY    +  ++  I    D+  +      +E    EP  +    P +L NG 
Sbjct: 878  GGKDHASARYINTLLQPISRTIFNPDDDAIL--TPQTDENHVIEPEFYMPIVPMVLINGA 935

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +T++P  N  +I      L++N E               P        +  I 
Sbjct: 936  EGIGTGWSTNVPGFNPLDIVANIRRLMNNEEQV-------------PMHPWWRGFKGEIK 982

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            ++    +  + V               + +TE+P          ++  +++ ++      
Sbjct: 983  QTA---KNKYDVTGVVT----KVDDTTVEITELPIHKWTQTFKTELETMLVGEKGEGSVK 1035

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMES---IFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
               E   +  +    +  + +     E     +     +      +     G++ +    
Sbjct: 1036 NYQEHHANENVHFVVQMDAKELVKAEEKGLLEYFKLTSKITTSNMICFDFDGKIKKYESP 1095

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            + IL E+ A R     +R       +    E L         I E
Sbjct: 1096 EAILDEFYAVRLGYYQKRKDHLASQLQMVFERLSNQARFVQMIVE 1140


>gi|112383286|gb|ABI17783.1| gyrase [Streptococcus suis]
 gi|112383288|gb|ABI17784.1| gyrase [Streptococcus suis]
 gi|112383290|gb|ABI17785.1| gyrase [Streptococcus suis]
 gi|112383292|gb|ABI17786.1| gyrase [Streptococcus suis]
 gi|112383294|gb|ABI17787.1| gyrase [Streptococcus suis]
 gi|112383296|gb|ABI17788.1| gyrase [Streptococcus suis]
 gi|112383298|gb|ABI17789.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 72/92 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|321268208|gb|ADW78912.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 95

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 51/95 (53%), Positives = 72/95 (75%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++E I+
Sbjct: 1   KYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIM 60

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
             ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  ADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 95


>gi|322510995|gb|ADX06308.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
           phycodnavirus 2]
          Length = 602

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 174/486 (35%), Gaps = 47/486 (9%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
             N +++     ++L   +    + ++     +R+IP++ DG K   R+I+++  +  L 
Sbjct: 151 ERNNVLDTRDTKITLGDFIHREMIHFSKYD-CDRSIPNMMDGLKVSQRKILYSAFKKNLV 209

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                 K A+  G V      H HG+ S+  ++V +AQ F       ++   G FG    
Sbjct: 210 HE---IKVAQFSGYVSEHSGYH-HGENSLNGAIVNMAQNFVGSNNINILMPNGQFGTRLQ 265

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G  +A+ RY    + ++  +I +  D+  + +    +    EP+ +    P +L NGT 
Sbjct: 266 GGKDSASERYIFTNLNKITRMIFKKEDDAILTYLKD-DGTFVEPIYYLPILPMILVNGTK 324

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GI  G +T IP  +  ++       + + +      + +  G          +       
Sbjct: 325 GIGTGFSTDIPCFHPVQLINYIQHKLAD-KAYTRDFVPFYQG---------FQGT----- 369

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
             + G   F  +  + +         I +TE+P  V     I     L + K + +L+D 
Sbjct: 370 IEKDGDRRFITKGNYTI-----DKQVITITELPIGVWNEDYI-----LHLEKCMDILKDY 419

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           +D+S +          + ++   L+        + T   +N   L      ++   + + 
Sbjct: 420 KDQSTDKKVYFKLTLKQPMEESDLI----KTFKLSTTLSINNMNLFDHND-KLKHYNEVY 474

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +         L      R+  I    E ++ L      I+E++    +  K         
Sbjct: 475 EICDDFIGIRLDYYEKRRLHLIQILKEEMEVLKNKCNYINELLNDTLDLRK--KTNNDIC 532

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG---KQQWNQIACE 478
            + E +    +N     L K+    +  E  + L ++                 +    E
Sbjct: 533 DILEKKKYTKINDSYHYLIKMSMDSVCQENVDSLNQQLNGKQSEYDKMWNSSHKDIWKDE 592

Query: 479 IREVKE 484
           + ++K+
Sbjct: 593 LEQLKK 598


>gi|270004896|gb|EFA01344.1| topoisomerase II [Tribolium castaneum]
          Length = 1547

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 145/390 (37%), Gaps = 49/390 (12%)

Query: 18   KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            K+VS    +    + ++ +    R+IP L DG KP  R+++    +          K A+
Sbjct: 695  KSVSYTDFVNLELVLFSNADNI-RSIPCLVDGLKPGQRKVMFTCFKRN---DKREVKVAQ 750

Query: 78   IVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRY 131
            + G V  +   H HG+ S+  ++V LAQ F       L+  +G FG     G  +A+ RY
Sbjct: 751  LAGSVAEMSAYH-HGEVSLCMTIVNLAQNFVGSNNINLLEPRGQFGTRMAGGKDSASPRY 809

Query: 132  TEARMTQVAELILQGVDEDAV--DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
               +M+ +  +I    D+  +  +F    + +  EPV +    P +L NG  GI  G  T
Sbjct: 810  IFTKMSPLTRMIFNPSDDYLLKHEFE---DNQKIEPVWYIPIIPMVLVNGADGIGTGWMT 866

Query: 190  SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
             IP++N +E+ +   A++D  E +                 ++   +  I      G   
Sbjct: 867  KIPNYNPRELVKNIRAMLDQEEPT----------------NMVPWYKNFIGSIVDCGDNR 910

Query: 250  FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE----S 305
            +       +     G   + +TE+P         E + E ++     +   I+D     +
Sbjct: 911  YVASGEIAII----GDNRVEITELPIGTWTQNYKENVLEPLLHGSEKVKAVIQDYKEYNT 966

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               V+ ++      L+       +     +++    +   +                   
Sbjct: 967  DTTVKFIITFLPGQLETLENEAGLHKTFKLQSLISTSSMCVFDEL---------GCIRRY 1017

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
                ++L      R+    +R + L+G+L 
Sbjct: 1018 DSVTDILKDYYKLRLTMYQKRKDYLEGMLK 1047


>gi|5453240|gb|AAD43489.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453241|gb|AAD43490.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453242|gb|AAD43491.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453243|gb|AAD43492.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453244|gb|AAD43493.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453245|gb|AAD43494.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 81

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +YD++VR+AQ F  RYPL+ G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|112983266|ref|NP_001037009.1| DNA topoisomerase 2 [Bombyx mori]
 gi|6094494|sp|O16140|TOP2_BOMMO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
            II; Short=TOPOII
 gi|2338552|gb|AAB67168.1| topoisomerase II [Bombyx mori]
          Length = 1547

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 133/357 (37%), Gaps = 40/357 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSL 98
            R+IP + DG KP  R++I    +          K A++ G V      H HG+QS+  ++
Sbjct: 721  RSIPSMIDGLKPGQRKVIFTCIKRN---DKREVKVAQLAGSVAEHSAYH-HGEQSLAMTI 776

Query: 99   VRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAV-- 152
            V LAQ +       L+  +G FG     G  +A+ RY    M+ +  LI    D+  +  
Sbjct: 777  VNLAQNYVGSNNINLLEPRGQFGTRLSGGKDSASPRYIFTLMSPLTRLIFHPHDDPLLVH 836

Query: 153  DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
            +F    + +  EPV +    P +L NG  GI  G +T IP++N ++I E    L+D  + 
Sbjct: 837  EFE---DNQKIEPVYYLPIIPMVLVNGVEGIGTGWSTKIPNYNPRDIAENLRRLLDGEKP 893

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
             +                      ++   +       + +     +         I +TE
Sbjct: 894  KVMHPW-----------------YKNFKGNVEGFGDKYVISGEAAILPGD----KIEITE 932

Query: 273  IPYQVQKSRLIEKIA--ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
            +P         E +    L   K  PL+ + R+ + +     +         ++  E I 
Sbjct: 933  LPVGTWTHNYKENVLEPMLGTDKVKPLISEYREYNTDTTVRFVVSLLPGKLSEIEAEGIH 992

Query: 331  MLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
             +  ++T   +             +     ++E L    ++  +    R   ++ ++
Sbjct: 993  KVFKLQTTISMTCMNAFDYNC--CLEKYDKVEEILREFYDLRVKYYVRRKDYLEGQL 1047


>gi|308159431|gb|EFO61962.1| DNA topoisomerase II [Giardia lamblia P15]
          Length = 1492

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 85/590 (14%), Positives = 187/590 (31%), Gaps = 43/590 (7%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKE--RAIPDLRDGFKPVHRRIIHAMSEM 64
            ++ +T ++ +   + +   +++  + Y    I+   RAIP L DG KP  R++++A  + 
Sbjct: 723  TDPDTYLDLSPTKIDITAFVDKELVLY---DIESNQRAIPSLMDGLKPGQRKVLYACFKR 779

Query: 65   GLDFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN 120
             L       K +++ G V  K   H HG+ S+  ++V +AQ F       L+   G FG+
Sbjct: 780  NLKTK---LKVSQLSGFVSDKAAYH-HGEASLNGTIVNMAQSFTGSNNIALLYPAGIFGS 835

Query: 121  --IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
                G  ++A RY    +  +A  +    D+  + +++  + +  EP  +    P +L N
Sbjct: 836  RARGGKDSSAPRYISTYLDPLARYLFPEPDDAIMQYKED-DGKVIEPFYYAPILPMVLIN 894

Query: 179  GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
            G+ GI  G +T+IP  +  ++  +    I       EK         +         +  
Sbjct: 895  GSDGIGTGFSTTIPQFDPLDMLHSIRLRIYGKTTRNEKKTLKPFSNGWKGTMTHEYDKNG 954

Query: 239  IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
                       +R+   + V ++      I +T++P  V      E+I   I        
Sbjct: 955  K-------FVRWRMTGCFSVVDLKT----IQITDLPIGVWTESYREEIETWIK-----GN 998

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ED         +     K ++        +    +  +  +         G  P +M + 
Sbjct: 999  EDAGTAKKPATKASATTKGKAKLKGAPSTTKEKPAGKDQLYDSVTGYY-KGIHPALMKVI 1057

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             +      +    L      R        +I           D I+   + +   +P   
Sbjct: 1058 DMSDNNTVNIIVTLSDE-CARHLIGTSDADIKTCNTAGTARYDNIVKGFKLDGSIRP--S 1114

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            + +   E  +  + +   + +      ++         +   +D       ++   I   
Sbjct: 1115 NMWLYNEKNMLCLYHTPFKIIDAFYAKRLDLYRVRRNNQITDMDDRSLLLNEKARFIKLI 1174

Query: 479  IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
            I +   I         R +    +    +    +           + N+     +   S 
Sbjct: 1175 IEDKLNI-----KNVSRDSVTELLWEKYQFHPSRKHRIILLSHRNLINKRQALRIDEDSE 1229

Query: 539  DLSALHFKEGDSLKIALHAHTTDRI--LLLSTDGKAYTLPAGNLLSGRGH 586
                    +   L+  L A   D +                 +      +
Sbjct: 1230 RPEEDDNADQRDLEKHLEATVKDLVGPQFFDAINSWSGFTVQDRNECYEY 1279


>gi|7682366|gb|AAF67238.1|AF144787_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 92

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/91 (53%), Positives = 70/91 (76%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARI G+V+GK HPHGD S+Y++ VR+AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEATVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  RMSKIALEMLRDINKNTVDFVDNYDANEREP 91


>gi|324500583|gb|ADY40270.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1514

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 147/387 (37%), Gaps = 39/387 (10%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++   VS +  + +  + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 683  LYDKDTHTVSFKDFVNKELVLFS-NLDNERSIPSLVDGLKPGQRKVLFTCFK---RADKK 738

Query: 72   FKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V  +   H HG+ S+  +++ LAQ +       L+   G FG     G  
Sbjct: 739  EVKVAQLAGAVGEMSAYH-HGEASLMATIINLAQDYVGSNNINLLLPIGQFGTRLQGGKD 797

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE-PVVFPSKFPNLLANGTSGIA 184
            +A+ RY   ++  V + +   VDE  + F   Y E     P  +    P +L NG  GI 
Sbjct: 798  SASPRYIFTQLNPVTKALFPSVDESVLRFL--YEENQRIEPEWYCPIIPTVLVNGAEGIG 855

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
               +T +P++N +EI E    +I   +                        +       +
Sbjct: 856  TAWSTKVPNYNPREIVENIRLMIRGEQPRHMVPWF----------------KNFRGTIEQ 899

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDI 301
            +    F       +     G   I +TE+P +       E + E +     K+  ++ D 
Sbjct: 900  MDENRFVCSGEIAII----GEGTIEITELPIRTWTQTYKESVLEPMLDGSDKQPAMITDF 955

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDG 359
            ++   +     L            ME +  +  ++T       VL    G + +   ++ 
Sbjct: 956  KEYHTDTTVKFLVKMTPEKLRAAQMEGLHKVFKLQTVINTTSMVLFDAMGCLRRFNTVEE 1015

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRR 386
            I  ++   R++    R +F+M  +  +
Sbjct: 1016 ICTDFFETRKKKYIERKAFQMGMLRAQ 1042


>gi|27542595|gb|AAO16898.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/90 (56%), Positives = 71/90 (78%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           A + +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   ATNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           +IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|258611761|ref|ZP_05711629.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-503]
 gi|258605976|gb|EEW18584.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-503]
          Length = 504

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 188/444 (42%), Gaps = 24/444 (5%)

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           M  +F  +D++  +  NM  ++  + P++M +  +L  ++ H++E++ +RS + ++    
Sbjct: 1   MNYLFKNTDLQVSYNFNMVAINK-KRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARA 59

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL+ A   +DE+I +IR     +     + +++  +E Q +AI++L+L  L   
Sbjct: 60  RQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEAIVSLQLYRLTNT 119

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ +  +      R T  + 
Sbjct: 120 DIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA------RRTEVQA 173

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSLKIALHAHT 559
              +     + ++  E + V ++  G+++     S    + + L  KE D        ++
Sbjct: 174 EITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKEADHAVFIQKMNS 233

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTAFV---YDSTCK 613
            D +LL ++ G     P   L   R          L  DL+  ++I +A     +    +
Sbjct: 234 LDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR 293

Query: 614 LLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            L V+  G       +        K    +K+  ++++  V  + G + + +  +N   L
Sbjct: 294 FLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGL 353

Query: 672 IFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
            +SI +IPE   R  GV+  + K    +   I     E    + +  R   +        
Sbjct: 354 RYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQKHILLATQRGSLKQMKASEFE 413

Query: 730 LGKRGGVGSLVPKGFPRS-GKFLS 752
              R   G L+ +    +  +F+ 
Sbjct: 414 PISRAKRGLLMLRELKSNPHRFIG 437


>gi|324500590|gb|ADY40273.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1560

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 147/387 (37%), Gaps = 39/387 (10%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++   VS +  + +  + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 683  LYDKDTHTVSFKDFVNKELVLFS-NLDNERSIPSLVDGLKPGQRKVLFTCFK---RADKK 738

Query: 72   FKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V  +   H HG+ S+  +++ LAQ +       L+   G FG     G  
Sbjct: 739  EVKVAQLAGAVGEMSAYH-HGEASLMATIINLAQDYVGSNNINLLLPIGQFGTRLQGGKD 797

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE-PVVFPSKFPNLLANGTSGIA 184
            +A+ RY   ++  V + +   VDE  + F   Y E     P  +    P +L NG  GI 
Sbjct: 798  SASPRYIFTQLNPVTKALFPSVDESVLRFL--YEENQRIEPEWYCPIIPTVLVNGAEGIG 855

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
               +T +P++N +EI E    +I   +                        +       +
Sbjct: 856  TAWSTKVPNYNPREIVENIRLMIRGEQPRHMVPWF----------------KNFRGTIEQ 899

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDI 301
            +    F       +     G   I +TE+P +       E + E +     K+  ++ D 
Sbjct: 900  MDENRFVCSGEIAII----GEGTIEITELPIRTWTQTYKESVLEPMLDGSDKQPAMITDF 955

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDG 359
            ++   +     L            ME +  +  ++T       VL    G + +   ++ 
Sbjct: 956  KEYHTDTTVKFLVKMTPEKLRAAQMEGLHKVFKLQTVINTTSMVLFDAMGCLRRFNTVEE 1015

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRR 386
            I  ++   R++    R +F+M  +  +
Sbjct: 1016 ICTDFFETRKKKYIERKAFQMGMLRAQ 1042


>gi|313621653|gb|EFR92449.1| DNA gyrase subunit A [Listeria innocua FSL S4-378]
          Length = 327

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 77/232 (33%), Gaps = 8/232 (3%)

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
              RS +     +  +   E D ++  +   T D +L  +  GK Y      +       
Sbjct: 7   STYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTA 66

Query: 588 E--AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           +   I  L+ +   + +        +     L   +  G       S+     + G   +
Sbjct: 67  KGIPIINLLGIESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAV 126

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           ++   +++  V    G  ++ +  ++ + + F  + I  M R   GVR    ++     +
Sbjct: 127 ELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEV-I 185

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + +    +    + Y +        L  RGG+G        ++G  ++
Sbjct: 186 GMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 237



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K     L A+  +E D L        +  +++ +  G++   P  N+        A    
Sbjct: 117 KIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTA-AGVRG 175

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           I L  + +++   V +   K+LVV+ KG       S+     R G   KT         +
Sbjct: 176 IRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNL 235

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  VTG+  + ++  +  L+ F ID + +  R   GV+L    +      + 
Sbjct: 236 VAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 289


>gi|34419516|ref|NP_899529.1| topoisomerase II small subunit [Vibrio phage KVP40]
 gi|34333197|gb|AAQ64352.1| topoisomerase II small subunit [Vibrio phage KVP40]
          Length = 428

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 87/459 (18%), Positives = 175/459 (38%), Gaps = 40/459 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             +L   + +  L YA+ TI+ RA+ +  DG KPV R +++ + +   D   +F K A +
Sbjct: 2   QRTLSSIVNDEALEYAMYTIENRALANGIDGLKPVQRFVLYNVIK---DASTSFDKVAAL 58

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
              V    + HG+ S  D+L  +A  +    P++ G+GNFG+     +A+ RY  A++  
Sbjct: 59  GSSVSKIGYNHGETSAQDALALMAAEWQNNVPIVQGRGNFGSRMVKESASARYVYAKLHD 118

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSE-PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             +L  + +          + + +   P  +    P +L NG  GIA G A +I  H+ +
Sbjct: 119 NFDLYFKDI-----HLSPEHKDLEHVPPQFYVPVLPMILMNGVQGIATGFACNILPHDPE 173

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
            + +A L  +   EI        +  P+F              +  +L    +       
Sbjct: 174 WVKKAVLEYLAGKEI----SEPVVKFPEFYG------------KIEKLEHNKYAQIGTVE 217

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +  +       VVTEIP     ++ I ++ +L+   +I    D   E+        F   
Sbjct: 218 ISGLTA-----VVTEIPTGFDHAKYIIELDKLVEKGKISSYVDETSET------FQFRVR 266

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM-PLDGILKEWLAHRREV--LFR 374
                 +  ES+     +++ F  N+NV+      +    +  ++K ++  R        
Sbjct: 267 FKRGAKMTEESVIKTLKLQSTFTQNINVIDENYQIRHFDDVRELVKWFVDFRMSFLPKRI 326

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           + S         + I K   I  +    II   +   +    + +  + +E  V  +LN+
Sbjct: 327 QDSTERTEKRASLAIAKVEFIKRVVSGTIILFGKKRAEVAAELKADEAFSE-HVTELLNM 385

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
            +  +   E  +++ +      E           +   +
Sbjct: 386 SVDKMTDDEIARLEKDATVAQKELSYWQKTTAQKEFIKD 424


>gi|312376011|gb|EFR23229.1| hypothetical protein AND_13286 [Anopheles darlingi]
          Length = 1530

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/380 (17%), Positives = 139/380 (36%), Gaps = 31/380 (8%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            +S +  +    + ++ S    R+IP + DG KP  R+++    +          K A++ 
Sbjct: 696  ISYKDFVNLELVLFSNSDNV-RSIPCMLDGLKPGQRKVMFTCFKRN---DKREVKVAQLA 751

Query: 80   GEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
            G V  +   H HG+QS+  +++ LAQ F       L+   G FG     G  +A+ RY  
Sbjct: 752  GSVAEMSAYH-HGEQSLCSTIINLAQNFVGSNNINLLYPGGQFGTRLTGGKDSASPRYIF 810

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              ++ +  LI   +D+  ++++   + +  EPV +    P LL NG  GI  G +T IP+
Sbjct: 811  TMLSTLTRLIFHPLDDPLLEYQYE-DNQRIEPVWYLPIIPMLLVNGAEGIGTGWSTKIPN 869

Query: 194  HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            HN +++      +++  E  +           +      +       +   +G       
Sbjct: 870  HNPRDVIANIRRMLNGEEPKVLNP--------WYKNFRGLVESVGHQKYLTVGNVALLDG 921

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
             +  + E+  G+W         Q  K  ++E +      ++  + +     +   VR V+
Sbjct: 922  QKIEISELPIGTW--------TQTYKENVLEPLLHGSDKQKAVISDYKEYNTDTTVRFVV 973

Query: 314  FPKNRSL---DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
                        +                           + +    + I +++   R E
Sbjct: 974  SFLPGEYAKLYAEEGGFHRLFKLTSSISTSSMNAFDDKNYLKRYDHANSIFQDFYTIRLE 1033

Query: 371  VLFRRSSFRMQAIDRRVEIL 390
               +R  + +  +    + +
Sbjct: 1034 YYGKRREYLLGMLQAEADSM 1053


>gi|109290217|ref|YP_656466.1| gp52 DNA topoisomerase subunit [Aeromonas phage 25]
 gi|104345890|gb|ABF72790.1| gp52 DNA topoisomerase subunit [Aeromonas phage 25]
          Length = 544

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 90/468 (19%), Positives = 180/468 (38%), Gaps = 38/468 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+    L+  +    L +A+ T++ERAIP + DGFKPV R  ++   E        F K 
Sbjct: 99  NLHNRHLQSIINNEALEFAMYTVEERAIPSIIDGFKPVQRFFMYRALEYAKQNKTKFNKV 158

Query: 76  ARIVGEVIGK-LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           A + G V     H HG+ S   +   +A  +    P++ G GNFG+     AAA RY   
Sbjct: 159 AALAGGVSEAGYH-HGEGSAAGAGQLIANTWNNNIPVLEGDGNFGSRLVQQAAAPRYVFC 217

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ Q    I + +    V      + E   P  +    P +LANG  GIA G AT+I  H
Sbjct: 218 RVHQNFWDIYKDISLSPVHP----DPEHLPPRFYLPVIPMVLANGVKGIATGYATTIFPH 273

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + + + +  LA +   EI   ++                   + IV           +  
Sbjct: 274 SYESLVKCTLAAVKGEEIPEPEVQFPCF--------------KGIVRRINS--KSIEIEG 317

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            + +     G   +++TE+P    +   +E ++ L   +    +   ++++++  R  + 
Sbjct: 318 LYELV----GQTKLIITEVPV---RYDRLEYVSILDKLEEQGKIVGYKEQTSDGFRFEVT 370

Query: 315 PKN-------RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGILKEWLA 366
            K           +P++  E I  + ++      N+ VL       +      ++++++ 
Sbjct: 371 LKRQDKFGELMEKNPEVAHERIIKMFNLRQNLSQNITVLDENGKLAEYECAADLIRDFVE 430

Query: 367 HRREVLFRRSSFRMQAIDRRVEI-LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           HR++   +R  F  +  +   ++           I+E I +           V       
Sbjct: 431 HRKKYTNQRVIFEKEKAEYSRDLAWAKFAFVNEVIEEKIVLRGKSKAQLIAEVKSKPNMA 490

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
              + ++ + +  L + E ++++ E      E +   +     +   +
Sbjct: 491 GFENELVGMSIYRLTEDETHKLQEEALKQTKEYDYWSNTTPENEYVKD 538


>gi|300176630|emb|CBK24295.2| unnamed protein product [Blastocystis hominis]
          Length = 1173

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 71/524 (13%), Positives = 173/524 (33%), Gaps = 47/524 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +  + ++     VS+   + +  + ++      R+IP + DG KP  R+++H   +  L 
Sbjct: 674  DPESYIDYEKSPVSIYDFINKELIQFSRQDCI-RSIPSMIDGLKPSQRKVLHGCIQRNLT 732

Query: 68   FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K  ++ G +      H HG+QS+  +++ +AQ F        +   G FG    
Sbjct: 733  ---KEIKVVQLSGYISESVLYH-HGEQSLNQTIISMAQDFVGSNNMNFLVPNGQFGTRLM 788

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY    +  + + + +  D   +  ++       EP  +    P +L NG  
Sbjct: 789  GGKDSASPRYIYTYLHPITKHVFREEDSALLPSQE-EEGVHIEPSYYLPILPTVLVNGAV 847

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T++ +HN  E+ +A +A +     +          P +P            + 
Sbjct: 848  GIGTGWSTNVCNHNPIEVADALIAQLRGTRSNR---------PLYP----WYRGFVGQIL 894

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                G   ++V       +       + +TE+P         + + +L+    + +    
Sbjct: 895  KKENG---YQVCGNVSWIDENT----LAITELPVGRWTQDYKQFLCDLVEQGDV-VTGFR 946

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
             + +  +V   +  K              M  D+     L  +   +      +      
Sbjct: 947  ENHTDTEVMFTVTVKKEKAAELKENREKLMK-DLRLIGSLTTSNFILFNSKGHIHHYKDA 1005

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
             E +    E        R + + +++           N    I  + +          + 
Sbjct: 1006 NEIMEEFIEFRLPFYQQRRENLMKQL---DKKCKLLENKSNFIQHVVDGSLVLHDRPIKK 1062

Query: 422  SLTENQVDAILNLRLRSLRKLEEY----------QIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +++ +   ++ +         +Y          + K +  +   ++ K    + + K+ 
Sbjct: 1063 VISDMEALGLMKIGSDGETSTYDYLLNLPLNGLTEEKRKQLDTEMKETKEKKEVLNSKES 1122

Query: 472  WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
             +    ++ E K  F +            + ++A +        
Sbjct: 1123 KDLWIEDLEEFKSNFIQMEAKRLSELVQGKRNQAYEVFTIDHYK 1166


>gi|5453247|gb|AAD43496.1| DNA gyrase subunit A [Staphylococcus hominis]
 gi|5453248|gb|AAD43497.1| DNA gyrase subunit A [Staphylococcus hominis]
          Length = 81

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDFS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +YD++VR+AQ F  RYPL+ G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|118139690|gb|ABK63291.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/89 (62%), Positives = 71/89 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + +    A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDG
Sbjct: 1   LSITSKFAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAV 152
           D+AAA RYTE R T++AE +L+ +D+D V
Sbjct: 61  DNAAAMRYTEVRTTRIAEEVLRDLDKDTV 89


>gi|328724888|ref|XP_001948540.2| PREDICTED: DNA topoisomerase 2-like isoform 1 [Acyrthosiphon pisum]
 gi|328724890|ref|XP_003248280.1| PREDICTED: DNA topoisomerase 2-like isoform 2 [Acyrthosiphon pisum]
          Length = 1537

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 150/433 (34%), Gaps = 41/433 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYA-LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L E+N + V+ +  + +  + ++ +    ER+I  + DG KP  R+++    +       
Sbjct: 675  LYEKNTRTVTYKDFVNKELVLFSNMD--NERSIASVVDGLKPGSRKVLFTCIKRN---DK 729

Query: 71   AFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
               K A++ G V      H HG+ S+  ++V LAQ +       L+   G FG     G 
Sbjct: 730  REIKVAQLAGSVAEHSAYH-HGEVSLMSTIVNLAQNYVGSNNINLLQPIGQFGTRLQGGK 788

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLANGTS 181
             AA+ RY    ++ +  LI    D    D   TY   + +  EPV +    P +L NG  
Sbjct: 789  DAASPRYIFTMLSPLTRLIFHPHD----DPLLTYLRDDNQKIEPVWYMPIIPMVLVNGAE 844

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G  T IP+HN +E+      ++   +    K         +         + S  +
Sbjct: 845  GIGTGWMTKIPNHNPREVISNIKRMLRGEDPLPMKP--------WYKNFTGHIEKLSEQK 896

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                G  G     R  + E+  G W         Q  K  ++E +      K   ++ D 
Sbjct: 897  FISSGELGVIGHNRVEITELPVGVW--------TQNYKESVLEPMLT-DTEKSPAVITDY 947

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV--PQVMPLDG 359
            ++ + +     +   N         E I     +     L             +      
Sbjct: 948  KEYNTDTTIKFVITMNPEKLQKAENEGIHKFFKLHASIGLTSMCAFDKDCVLKKYEATQQ 1007

Query: 360  ILKEWLAHRREVL--FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
            IL+E+ A R +     +     M   +      +   I      ++    R + +    +
Sbjct: 1008 ILREFYAVRLDFYGKRKAYLEGMLGAEAAKLTNQARFIVEKCDGDLRIENRKKSEMVKEL 1067

Query: 418  VSRFSLTENQVDA 430
            V R   ++     
Sbjct: 1068 VRRGYNSDPVKAW 1080


>gi|65431527|gb|AAY42592.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 84

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+ 
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYR 130
            RYPL+ GQGNFG+   D  AA R
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMR 84


>gi|28916594|gb|AAO59530.1| gyrase A [Bacillus subtilis subsp. spizizenii]
          Length = 217

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/218 (39%), Positives = 136/218 (62%), Gaps = 1/218 (0%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA M++++  IL+ + +D +D++DTY   + +PVV PS+FPNLL  G +G A GMA
Sbjct: 1   MRYTEAGMSKISMEILRDITKDTLDYQDTYEGPERDPVVMPSRFPNLLVTGAAGFAEGMA 60

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            +IP H + +I +  LA  +NP  +I +L+E+I GPDFPT G I      I ++Y  GRG
Sbjct: 61  PNIPPHQLGKIIDGVLAESENPGHTIRELMEFIPGPDFPTAGQIF-GPSGIRKAYETGRG 119

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +++   G   IVVTEIPYQV K+ LIEKIA+L+  K+I  + D+RDES   
Sbjct: 120 SITIRAKAEIDQTSSGKERIVVTEIPYQVNKANLIEKIADLVRDKKIEGITDLRDESDRT 179

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
              ++    R  + ++++ +++  + ++  F +N   L
Sbjct: 180 GMRIVIEIRRDANANVILNNLYKQTALQASFGINRLAL 217


>gi|228861574|ref|YP_002854595.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB14]
 gi|227438590|gb|ACP30903.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB14]
          Length = 442

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 98/460 (21%), Positives = 183/460 (39%), Gaps = 48/460 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K 
Sbjct: 2   QLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKL 61

Query: 76  ARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           A I G V  +G  H HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  
Sbjct: 62  ASIAGGVADLG-YH-HGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIF 119

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP--VVFPSKFPNLLANGTSGIAVGMATSI 191
           AR+++        V +D  ++   + +++  P     P   P +L NG SGIA G AT I
Sbjct: 120 ARVSKN----FYNVYKDT-EYAPVHQDKEHIPPAFYLP-IIPTVLLNGVSGIATGYATYI 173

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             H+V  + +A L  +   +++  K    +  P+F    + ++ +  I  +Y+       
Sbjct: 174 LPHSVSSVKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKFTSRT-- 227

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
                           + +TEIPY+  +   + KI + +  K     +D   E     ++
Sbjct: 228 ---------------QMHITEIPYKYDRETYVSKILDPLEDKGFITWDDACGEHGFGFKV 272

Query: 312 VLFPKNRSLDPDLLME-SIFMLSDMETRFPLNMNVLSMGRVPQVM--------PLDGILK 362
               +    D +      I     +  R   N+ V++     QV             + K
Sbjct: 273 KFRKEYSLCDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRK 332

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            ++  R +   + +    +    +   +K ++       EI+   +   +    +     
Sbjct: 333 TYVQKRIDNKIKETESAFRLAFAKAHFIKKVI-----SGEIVVQGKTRKELTEELSKIDM 387

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
            +    D ++ + +  +   E  ++  E      E E   
Sbjct: 388 YSSYV-DKLVGMNIFHMTSDEAKKLAEEAKAKKEENEYWK 426


>gi|161622523|ref|YP_001595383.1| gp52 topoisomerase II medium subunit [Enterobacteria phage JS98]
 gi|160213829|gb|ABX11168.1| gp52 topoisomerase II medium subunit [Enterobacteria phage JS98]
          Length = 442

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 95/450 (21%), Positives = 179/450 (39%), Gaps = 39/450 (8%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+  ++   LAYA+ T++ RAIP++ DGFKPV R ++    +M       F K A I G 
Sbjct: 8   LKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFHKLASIAGG 67

Query: 82  V--IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM-TQ 138
           V  +G  H HG+ S  ++   +A  +   +PL+ GQGNFG+     AAA RY  AR+ T 
Sbjct: 68  VADLG-YH-HGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQKAAASRYIFARIGTN 125

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEP--VVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            A++      +D  ++   + + + +P     P   P +L NG SGIA G AT+I  H+ 
Sbjct: 126 FAKVY-----KDT-EYAPVHADVEHKPPAFYLP-IIPTVLLNGISGIATGYATNILPHSF 178

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
             + +A L ++    ++  K    +  P+F              +   +  G + +R  +
Sbjct: 179 DSVKKAVLQVLQEKRVTKPK----VAYPEFRG------------DVVEIEPGSYELRGTY 222

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
                      + +TEIPY+  +   + K+ + +  K     +D  DE+    ++    K
Sbjct: 223 KFT----SRTQMHITEIPYKYDRETYVAKVLDPLEDKGYITYDDDCDENGFGFKVK-IRK 277

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
              L  +   +   ++ D       + N+  +    ++   + +++              
Sbjct: 278 EYELPTEENKKHEKIMKDFGLIERRSQNLTVINEKGKLKVYEDVVELIRDFVEVRKTFVQ 337

Query: 377 SFRMQAIDRRVEILK----GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
                 I    E  K            ID ++ I     K     ++   +     D ++
Sbjct: 338 KRIDGKIIETEEAFKLALAKATFIKDVIDGVVVIQGKTRKVLTEELASNKVYGEYADKLV 397

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
            + +  +   E  ++  E      E +   
Sbjct: 398 AMNIFHITSDEAKKLALEAKAKKEEHQYWK 427


>gi|170591240|ref|XP_001900378.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia malayi]
 gi|158591990|gb|EDP30592.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia malayi]
          Length = 1178

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 167/474 (35%), Gaps = 47/474 (9%)

Query: 10   NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +T V+ N    +    + E  + Y+      R++P++ DG KP  R+++  M      + 
Sbjct: 706  STAVDSNRNQKTFSEFVNEELVEYS-QLDLRRSLPNVVDGLKPSQRKVLFTMFG---RYE 761

Query: 70   AAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                + +++ G V      H HG++S+ +++VRLAQ F       L+   G FG     G
Sbjct: 762  RGEIRVSQLAGAVSQYCGYH-HGEESLVNTIVRLAQDFVGSNNLNLLLPLGQFGTRLSGG 820

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
            +  A+ RY    ++ +A  I    D D V           EP  +    P +L NG  GI
Sbjct: 821  EDVASARYIYTSLSPLARAIFPHPD-DKVLKNLVEENALVEPEWYCPIIPMILINGAEGI 879

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G AT I     +++   A  LI                   P   ++   R+     Y
Sbjct: 880  GTGWATKILPRCPRQVISNAQRLI----------------DGRPLQDMLPHFRKFQGTIY 923

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI-AELIIAKRIPLLEDIR 302
                  + +  +     +  G   I+ TE+P  +  ++  EK+    I    I   E++ 
Sbjct: 924  ETAPRQYSISGKVSYRRLKSGLRAII-TELPTGIWNNKYKEKVLDSAIKNGIISNYEELH 982

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGIL 361
             ES     + +  K    D   +     +L         +M +     V  +      I 
Sbjct: 983  TESNVHFILHVIDKPLLSDKKQIKALNRLLKLRSVASENSMILFDEKNVLQKYDSTREIF 1042

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL----------------NIDEIIA 405
            +E+   RR+    R    +  ++ +++ ++  +                     I ++  
Sbjct: 1043 QEFFEVRRQKYIERRECELVIMEGKLKFIENQVRFVNAIINGEIIIKKKNRAEIIAQLAE 1102

Query: 406  IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
               + +  K    +  +        +L++ L  L   E   ++ +   L    +
Sbjct: 1103 KGFDSNPMKAKNATDGNCNPPDFAYLLDMPLCRLSNEEILVLQEKRSQLWERFK 1156


>gi|313768427|ref|YP_004062107.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599123|gb|ADQ91147.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
          Length = 1070

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 150/404 (37%), Gaps = 45/404 (11%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +N   +   +VK +++   + +  + ++L+ +K R+I  + DG KP  R+++++  +  L
Sbjct: 627 ANQLEIPYGDVKQLNITDFVHKDLVNFSLADLK-RSIAHVADGLKPSQRKVMYSCFQKNL 685

Query: 67  DFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                  K A++   V  K   H HG+ S+ +++V+LA  +       L+   G FG   
Sbjct: 686 KDE---MKVAQLAAYVAEKSAYH-HGEVSLAETIVKLANDYTGSNNINLLEPCGQFGTRL 741

Query: 122 -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
             G  A+  RY   ++T+ A  +    D+  +++ D  +    EP  +    P +L NGT
Sbjct: 742 MGGKDASQTRYIFTKLTKEARKLFDPKDDAILNYLDD-DGRSIEPDFYMPTLPMVLVNGT 800

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GI  G +  IP  N  +I E     ++       K                    +   
Sbjct: 801 EGIGTGFSCYIPPFNPDDIKENIKRSLEGESPIDMKP--------------WFRGFKG-- 844

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           + ++   G +     W           + VTE+P         E +  L+  K I    +
Sbjct: 845 KVFKDDVGLWITEGVW-----RDTGSRLKVTELPPGRWTQDYKEYLDTLVDKKMITSFTN 899

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
                  D  I  +            + +     +   F      L      + +    +
Sbjct: 900 NSTTEDVDFEIFGY----------SGKDLIKDLKLRKTFHTTNMHLFHPTKGIYKYTSPE 949

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            ILK+++  R E   +R +  +  +++R E+          + E
Sbjct: 950 EILKDFVELRLEHYKKRKAHLIDVLEKRAEMCGHKSKFVSMVIE 993


>gi|308510362|ref|XP_003117364.1| CRE-TOP-2 protein [Caenorhabditis remanei]
 gi|308242278|gb|EFO86230.1| CRE-TOP-2 protein [Caenorhabditis remanei]
          Length = 1547

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 95/455 (20%), Positives = 173/455 (38%), Gaps = 51/455 (11%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDS 97
            ER+IP L DGFKP  R+++ A  +          K A++ G V  I   H HG+QS+  +
Sbjct: 730  ERSIPCLVDGFKPGQRKVLFACFK---RADKREVKVAQLAGAVAEISAYH-HGEQSLMGT 785

Query: 98   LVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            +V LAQ F       L+   G FG     G  +A+ RY   +++ V   I    D++ + 
Sbjct: 786  IVNLAQDFVGSNNINLLLPIGQFGTRLQGGKDSASARYIFTQLSPVTRSIFPAHDDNVLR 845

Query: 154  FRDTYNEEDSE-PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
            F   Y E     P  +    P +L NG  GI  G +T+IP++N ++I +    LI     
Sbjct: 846  FL--YEENQRIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRDIVKNIKRLIAGE-- 901

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR--ARWCVEEV--GRGSWCI 268
                                  S+++I   Y+  RG       +R+             I
Sbjct: 902  ----------------------SQKAIAPWYKNFRGNIIQIDSSRYACYGEVATIDDNTI 939

Query: 269  VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDP 322
             +TE+P +       EK+ E         K+ PL+ D ++  +   V+ V+      L  
Sbjct: 940  EITELPVKQWTQDYKEKVLEALLDSSDKDKKAPLVLDYKEYHTDTTVKFVVKLAPGKLRE 999

Query: 323  DLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGILKEWLAHRREVLFRRSSFR- 379
                E +  +  +++       VL    G +      + I +E+   R+E   +R  +  
Sbjct: 1000 LERGEDLHQVFKLQSVINTTCMVLFDAAGCLRTYSSPEEITQEFYDCRKEKYIQRKDYLL 1059

Query: 380  -MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +     +    +   I     +EI+   + +      ++      +         +L+ 
Sbjct: 1060 GVLQAQSQRLTNQARFIVAKINNEIVMENKKKAVIVETLIKMKFDPDPVKKWKEEQKLKE 1119

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
            LR+  E ++  E      E++   +  +S  +   
Sbjct: 1120 LRESGEIELDEEDQVDDDEEDGEGTSASSSTKVLE 1154


>gi|67590421|ref|XP_665482.1| DNA topoisomerase II [Cryptosporidium hominis TU502]
 gi|54656191|gb|EAL35251.1| DNA topoisomerase II [Cryptosporidium hominis]
          Length = 1069

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 92/201 (45%), Gaps = 12/201 (5%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             + +  + ++      R+IP+L DG KP  R+++ A  +  L+      K A++ G V 
Sbjct: 84  DFIHKELVLFSRYD-TTRSIPNLLDGLKPGQRKVLFATFKKKLNNE---LKVAQLAGYVA 139

Query: 84  --GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMT 137
                H HG+ S+  ++V +AQ F       L+   G FG+    G  A+A RY   +++
Sbjct: 140 EHSAYH-HGESSLQSTIVNMAQNFVGSNNLNLLEPCGQFGSRKEGGKDASAARYIFTKLS 198

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           +    I    D+  + +    + +  EP+ +    P +L NGT GI  G ++S+P++N +
Sbjct: 199 KWTRYIFPEADDPLLTYLYD-DGQQIEPLYYVPIIPMILVNGTDGIGTGWSSSVPNYNPK 257

Query: 198 EICEAALALIDNPEISIEKLL 218
           +I      ++    +      
Sbjct: 258 DIIMNLKRMLKGEMMIPMTPW 278


>gi|291290484|dbj|BAI83279.1| topoisomerase II medium subunit [Enterobacteria phage AR1]
          Length = 442

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 171/451 (37%), Gaps = 30/451 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K 
Sbjct: 2   QLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKL 61

Query: 76  ARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           A I G V  +G  H HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  
Sbjct: 62  ASIAGGVADLG-YH-HGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIF 119

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP--VVFPSKFPNLLANGTSGIAVGMATSI 191
           AR+++        V +D  ++   + +++  P     P   P +L NG SGIA G AT I
Sbjct: 120 ARVSKN----FYNVYKDT-EYAPVHQDKEHIPPAFYLPV-IPTVLLNGVSGIATGYATYI 173

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             H+V  + +A L  +   +++  K    +  P+F    + ++ +  I      G   F 
Sbjct: 174 LPHSVSSVKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIR-----GTYKFT 224

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
            R +  + E+                 + +      +             R E +     
Sbjct: 225 SRTQMHITEIPYKYDRETYVSKILDPLEDKGFITWDDACGEHGFGFKVKFRKEYSLSDNE 284

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
                    D  L+      ++ +  +  L +    +  +        + K ++  R + 
Sbjct: 285 EERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLI---KDFVEVRKTYVQKRIDN 341

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
             + +    +    +   +K ++       EI+   +   +    +      +    D +
Sbjct: 342 KIKETESAFRLAFAKAHFIKKVI-----SGEIVVQGKTRKELTEELSKIEMYSSYV-DKL 395

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           + + +  +   E  ++  E      E E   
Sbjct: 396 VGMNIFHMTSDEAKKLAEEAKAKKEENEYWK 426


>gi|62005849|dbj|BAD91316.1| putative DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130102|gb|ACV95499.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130118|gb|ACV95507.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 59/83 (71%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PHGD S+YD+LVR+AQP+  RYP
Sbjct: 61  PHGDSSIYDTLVRMAQPWSLRYP 83


>gi|66357004|ref|XP_625680.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
 gi|46226680|gb|EAK87659.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
          Length = 1797

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 92/201 (45%), Gaps = 12/201 (5%)

Query: 24   FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
              + +  + ++      R+IP+L DG KP  R+++ A  +  L+      K A++ G V 
Sbjct: 814  DFIHKELVLFSRYD-TTRSIPNLLDGLKPGQRKVLFATFKKKLNNE---LKVAQLAGYVA 869

Query: 84   --GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMT 137
                 H HG+ S+  ++V +AQ F       L+   G FG+    G  A+A RY   +++
Sbjct: 870  EHSAYH-HGESSLQSTIVNMAQNFVGSNNLNLLEPCGQFGSRKEGGKDASAARYIFTKLS 928

Query: 138  QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +    I    D+  + +    + +  EP+ +    P +L NGT GI  G ++S+P++N +
Sbjct: 929  KWTRYIFPEADDPLLTYLYD-DGQQIEPLYYVPIIPMILVNGTDGIGTGWSSSVPNYNPK 987

Query: 198  EICEAALALIDNPEISIEKLL 218
            +I      ++    +      
Sbjct: 988  DIIMNLKRMLKGEMMVPMTPW 1008


>gi|9632656|ref|NP_049875.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage T4]
 gi|1351263|sp|P07065|TOP5_BPT4 RecName: Full=DNA topoisomerase medium subunit; AltName:
           Full=Protein Gp52
 gi|5354280|gb|AAD42487.1|AF158101_74 gp52 topoisomerase II, medium subunit [Enterobacteria phage T4]
 gi|728620|emb|CAA27959.1| 52-protein [Enterobacteria phage T4]
 gi|299780622|gb|ADJ39984.1| DNA topoisomerase II medium subunit [Enterobacteria phage T4T]
          Length = 442

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 172/451 (38%), Gaps = 30/451 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K 
Sbjct: 2   QLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKL 61

Query: 76  ARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           A I G V  +G  H HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  
Sbjct: 62  ASIAGGVADLG-YH-HGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIF 119

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP--VVFPSKFPNLLANGTSGIAVGMATSI 191
           AR+++        V +D  ++   + +++  P     P   P +L NG SGIA G AT I
Sbjct: 120 ARVSKN----FYNVYKDT-EYAPVHQDKEHIPPAFYLP-IIPTVLLNGVSGIATGYATYI 173

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             H+V  + +A L  +   +++  K    +  P+F    + ++ +  I      G   F 
Sbjct: 174 LPHSVSSVKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIR-----GTYKFT 224

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
            R +  + E+                 +++      +             R E +     
Sbjct: 225 SRTQMHITEIPYKYDRETYVSKILDPLENKGFITWDDACGEHGFGFKVKFRKEYSLSDNE 284

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
                    D  L+      ++ +  +  L +    +  +        + K ++  R + 
Sbjct: 285 EERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLI---KDFVEVRKTYVQKRIDN 341

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
             + +    +    +   +K ++       EI+   +   +    +      +    D +
Sbjct: 342 KIKETESAFRLAFAKAHFIKKVI-----SGEIVVQGKTRKELTEELSKIDMYSSYV-DKL 395

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           + + +  +   E  ++  E      E E   
Sbjct: 396 VGMNIFHMTSDEAKKLAEEAKAKKEENEYWK 426


>gi|228861192|ref|YP_002854215.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB51]
 gi|227438866|gb|ACP31178.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB51]
          Length = 442

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 171/451 (37%), Gaps = 30/451 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K 
Sbjct: 2   QLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKL 61

Query: 76  ARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           A I G V  +G  H HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  
Sbjct: 62  ASIAGGVADLG-YH-HGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIF 119

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP--VVFPSKFPNLLANGTSGIAVGMATSI 191
           AR+++        V +D  ++   + +++  P     P   P +L NG SGIA G AT I
Sbjct: 120 ARVSKN----FYNVYKDT-EYAPVHQDKEHIPPAFYLP-IIPTVLLNGVSGIATGYATYI 173

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             H+V  + +A L  +   +++  K    +  P+F    + ++ +  I      G   F 
Sbjct: 174 LPHSVSSVKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIR-----GTYKFT 224

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
            R +  + E+                 + +      +             R E +     
Sbjct: 225 SRTQMHITEIPYKYDRETYVSKILDPLEDKGFITWDDACGEHGFGFKVKFRKEYSLSDNE 284

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
                    D  L+      ++ +  +  L +    +  +        + K ++  R + 
Sbjct: 285 EERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLI---KDFVEVRKTYVQKRIDN 341

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
             + +    +    +   +K ++       EI+   +   +    +      +    D +
Sbjct: 342 KIKETESAFRLAFAKAHFIKKVI-----SGEIVVQGKTRKELTEELSKIDMYSSYV-DKL 395

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           + + +  +   E  ++  E      E E   
Sbjct: 396 VGMNIFHMTSDEAKKLAEEAKAKKEENEYWK 426


>gi|296418623|ref|XP_002838930.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634913|emb|CAZ83121.1| unnamed protein product [Tuber melanosporum]
          Length = 1612

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 99/217 (45%), Gaps = 12/217 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++ ++  +S    + +  + ++++    R+IP + DG KP  R+I+ A  +  L 
Sbjct: 666 KPGTYLDHSIDKISYPEFVNKELILFSMADNI-RSIPSVVDGLKPGQRKILFACFKRKLT 724

Query: 68  FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                 K + + G V        HG+ S+  ++  +AQ F       L+  +G+FG    
Sbjct: 725 ---KQLKVSELSGFVSECTAYQ-HGESSLQVTITGMAQTFVGSNNVNLLEPEGSFGTRLD 780

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G  AA+ RY    ++  A  +    D+  + +    +++  EP+ +    P +L NG  
Sbjct: 781 GGKDAASPRYIYTLLSPFARKLFPATDDPLLTYNLD-DDKKIEPMWYAPVVPLVLINGAD 839

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           GI  G +T+IP++N +++      L++N E+      
Sbjct: 840 GIGTGWSTTIPNYNPEDVVANIRRLMNNEELEPMTPW 876


>gi|112383304|gb|ABI17792.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 73/92 (79%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD+++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDKAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|116326478|ref|YP_803198.1| DNA topoisomerase subunit [Enterobacteria phage RB32]
 gi|115344071|gb|ABI95080.1| DNA topoisomerase subunit [Enterobacteria phage RB32]
          Length = 442

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 98/460 (21%), Positives = 183/460 (39%), Gaps = 48/460 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K 
Sbjct: 2   QLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKL 61

Query: 76  ARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           A I G V  +G  H HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  
Sbjct: 62  ASIAGGVADLG-YH-HGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIF 119

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP--VVFPSKFPNLLANGTSGIAVGMATSI 191
           AR+++        V +D  ++   + +++  P     P   P +L NG SGIA G AT I
Sbjct: 120 ARVSKN----FYNVYKDT-EYAPVHQDKEHIPPAFYLP-IIPTVLLNGVSGIATGYATYI 173

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             H+V  + +A L  +   +++  K    +  P+F    + ++ +  I  +Y+       
Sbjct: 174 LPHSVSSVKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKFTSRT-- 227

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
                           + +TEIPY+  +   + KI + +  K     +D   E     ++
Sbjct: 228 ---------------QMHITEIPYKYDRETYVSKILDPLEDKGFITWDDACGEHGFGFKV 272

Query: 312 VLFPKNRSLDPDLLME-SIFMLSDMETRFPLNMNVLSMGRVPQVM--------PLDGILK 362
               +    D +      I     +  R   N+ V++     QV             + K
Sbjct: 273 KFRKEYFLSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRK 332

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            ++  R +   + +    +    +   +K ++       EI+   +   +    +     
Sbjct: 333 TYVQKRIDNKIKETESAFRLAFAKAHFIKKVI-----SGEIVVQGKTRKELTEELSKIDM 387

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
            +    D ++ + +  +   E  ++  E      E E   
Sbjct: 388 YSSYV-DKLVGMNIFHMTSDEAKKLAEEAKAKKEENEYWK 426


>gi|237743166|ref|ZP_04573647.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
 gi|229433462|gb|EEO43674.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
          Length = 379

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 107/317 (33%), Gaps = 9/317 (2%)

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E   + A  +++  +L    + ++ +  E+ E+KE ++              +  
Sbjct: 1   EKIDTEFKEIEALIKELREVLEDNNKIYDIMKKELLELKEKYADKRRTKIEEERMEILPE 60

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
                 +  +       V        ++ +     +SAL+  E D  +    A T D I+
Sbjct: 61  DLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALNTIEDDYAEKITSASTLDTIM 120

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAI--QLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
           + +  GK Y + A  +              +I+L+  + +    V   +    +++ ++ 
Sbjct: 121 VFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEKVRDTIVIKEFLPEKEVVFITK 180

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSID 676
            G        E       G   +K   ++ +  V  +     + + +   +     F  D
Sbjct: 181 NGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTD 240

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            I    R  +GV+  + + G +              +      Y +  +        RGG
Sbjct: 241 TIRATGRSTQGVKAITLRKGDMVVSAMLIKNPETDILTITENGYGKRTSLDEYPQYNRGG 300

Query: 736 VGSLVPKGFPRSGKFLS 752
            G +  K   ++GK +S
Sbjct: 301 KGVINLKVNEKNGKVVS 317



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 53/149 (35%), Gaps = 5/149 (3%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + DG         + +     + ++ +     +  +    + +    +L ++  G     
Sbjct: 229 THDGYCTRFLTDTIRATGRSTQGVKAITLRKGDMVVSAMLIKNPETDILTITENGYGKRT 288

Query: 627 EESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
              E     R GK  + +   E   K+  V++V+ D  +  +  N  ++  SI++I  + 
Sbjct: 289 SLDEYPQYNRGGKGVINLKVNEKNGKVVSVLEVSEDEELMCITSNGIVIRTSINEISRIG 348

Query: 683 RG-KGVRLQSYKDGGISDVICFKICEGLT 710
           R  +GVR+    D      I     E   
Sbjct: 349 RATQGVRIMKVADDEKVAAITKIKKEEDL 377



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  L     N  +V+        +L+ ++S G   
Sbjct: 278 TITENGYGKRTSLDEYPQYNRGGKGVINLKVNEKNGKVVSVLEVSEDEELMCITSNGIVI 337

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
               +EI    R   G   +KV+ +EK+  + K+  +   
Sbjct: 338 RTSINEISRIGRATQGVRIMKVADDEKVAAITKIKKEEDL 377


>gi|330858778|ref|YP_004415153.1| putative DNA topoisomerase subunit [Shigella phage Shfl2]
 gi|327397712|gb|AEA73214.1| putative DNA topoisomerase subunit [Shigella phage Shfl2]
          Length = 442

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 96/460 (20%), Positives = 182/460 (39%), Gaps = 48/460 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K 
Sbjct: 2   QLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKL 61

Query: 76  ARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           A I G V  +G  H HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  
Sbjct: 62  ASIAGGVADLG-YH-HGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIF 119

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP--VVFPSKFPNLLANGTSGIAVGMATSI 191
           AR+++    + +       ++   + +++  P     P   P +L NG SGIA G AT I
Sbjct: 120 ARVSKNFYSVYKD-----TEYAPVHQDKEHIPPAFYLP-IIPTVLLNGVSGIATGYATYI 173

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             H+V  + +A L  +   +++  K    +  P+F    + ++ +  I  +Y+       
Sbjct: 174 LPHSVSSVKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKFTSRT-- 227

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
                           + +TEIPY+  +   + KI + +  K     +D   E     ++
Sbjct: 228 ---------------QMNITEIPYKYDRETYVSKILDPLEDKGFITWDDACGEHGFGFKV 272

Query: 312 VLFPKNRSLDPDLLME-SIFMLSDMETRFPLNMNVLSMGRVPQVM--------PLDGILK 362
               +    D +      I     +  R   N+ V++     QV             + K
Sbjct: 273 KFRKEYSLSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRK 332

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            ++  R +   + +    +    +   +K ++       EI+   +   +    +     
Sbjct: 333 TYVQKRIDNKIKETESAFRLAFAKAHFIKKVI-----SGEIVVQGKTRKELTEELSKIDM 387

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
            +    D ++ + +  +   E  ++  E      E E   
Sbjct: 388 YSSYV-DKLVGMNIFHMTSDEAKKLAEEAKAKKEENEYWK 426


>gi|139439850|ref|ZP_01773215.1| Hypothetical protein COLAER_02249 [Collinsella aerofaciens ATCC
           25986]
 gi|133774778|gb|EBA38598.1| Hypothetical protein COLAER_02249 [Collinsella aerofaciens ATCC
           25986]
          Length = 339

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 86/243 (35%), Gaps = 8/243 (3%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                V        R+ K     +S ++ KE D +     A T + +L  S+ GK Y L 
Sbjct: 6   THTGYVKRIPVAAYRAQKRGGKGVSGVNLKEDDVIDEMFIASTHEYVLFFSSKGKVYRLK 65

Query: 577 AGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI 631
              L   + +  G AI  L+     + I +      + +   L+  +  G       S  
Sbjct: 66  VHELPVGTRQARGTAIVNLLPFEEGEKIASVISCREFPANEYLMFATKSGMVKKTVMSAY 125

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
             + R G   + +  ++ +  V +V  GD + +     K ++FS +Q+    R   GVR 
Sbjct: 126 DRSRRDGLIAINLRDDDALLNVRRVREGDKIILATTAGKAIMFSEEQVRATGRDTSGVRG 185

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
              KDG     +      G  ++    R Y +           RGG G    +   R G 
Sbjct: 186 IGMKDGVSVLGMEVTNGNGDLFV-ITERGYGKRTPVADYPEQNRGGQGVYTIQMTERKGN 244

Query: 750 FLS 752
             +
Sbjct: 245 LAA 247



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 72/201 (35%), Gaps = 8/201 (3%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
               +  M   +   V  +        +     L A++ ++ D+L         D+I+L 
Sbjct: 102 FPANEYLMFATKSGMVKKTVMSAYDRSRRD--GLIAINLRDDDALLNVRRVREGDKIILA 159

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +T GKA        +   G   +    I +     ++   V +    L V++ +G     
Sbjct: 160 TTAGKAIMFS-EEQVRATGRDTSGVRGIGMKDGVSVLGMEVTNGNGDLFVITERGYGKRT 218

Query: 627 EESEIIANTRKGKTF--LKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS 682
             ++     R G+    ++++  +     +K  G    + +V E   ++    D+I +  
Sbjct: 219 PVADYPEQNRGGQGVYTIQMTERKGNLAAMKTVGPQHELFIVTEGATVIRVKTDEISQTG 278

Query: 683 RG-KGVRLQSYKDGGISDVIC 702
           R  +GV++ +  D      + 
Sbjct: 279 RATQGVKMMTVDDNDRICAVA 299



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 48/138 (34%), Gaps = 11/138 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKM-KLVVKVTGDHVAVVGENRKL 670
           ++ ++  G    +  +   A  R GK    + +  ++ + ++ +  T ++V       K+
Sbjct: 2   VVTITHTGYVKRIPVAAYRAQKRGGKGVSGVNLKEDDVIDEMFIASTHEYVLFFSSKGKV 61

Query: 671 LIFSIDQIPEMSR-GKGVRLQSY---KDGGIS--DVICFKICEGLTWIDSAGRSYNRSEN 724
               + ++P  +R  +G  + +    ++G      + C +       + +      +   
Sbjct: 62  YRLKVHELPVGTRQARGTAIVNLLPFEEGEKIASVISCREFPANEYLMFATKSGMVKKTV 121

Query: 725 DLLGWLGKRGGVGSLVPK 742
                  +R   G +   
Sbjct: 122 MSAYDRSRRD--GLIAIN 137


>gi|112383306|gb|ABI17793.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 72/92 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDIAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFSDNYDASEREP 92


>gi|284027745|gb|ADB66699.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 105

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 75/105 (71%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM+ +G D+  A KK+AR+VG+VIG  HPHGD + YD++VR+AQPF  R+ L+ GQG 
Sbjct: 1   LYAMNVLGHDWIKAKKKAARVVGDVIGIYHPHGDSAEYDTIVRMAQPFSLRHMLVDGQGI 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           FG+IDGD AAA R+TE R+  +A  +   ++ + VDF D Y+  +
Sbjct: 61  FGSIDGDCAAAMRHTEIRLALIAHRLKADLEGETVDFVDNYDGTE 105


>gi|158299572|ref|XP_319665.4| AGAP008917-PA [Anopheles gambiae str. PEST]
 gi|157013582|gb|EAA14841.5| AGAP008917-PA [Anopheles gambiae str. PEST]
          Length = 1427

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 68/379 (17%), Positives = 139/379 (36%), Gaps = 31/379 (8%)

Query: 18   KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            K +S +  +    + ++ S    R+IP + DG KP  R++++   +          K A+
Sbjct: 670  KEISYKDFVNLELVLFSNSDNV-RSIPCMLDGLKPGQRKVLYTCFK---RDDKREVKVAQ 725

Query: 78   IVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRY 131
            + G V  K   H HG+ S+  +++ LAQ +       L+   G FG     G  +A+ RY
Sbjct: 726  LAGSVAEKSAYH-HGEMSLCSTIINLAQNYVGSNNINLLYPGGQFGTRLTGGKDSASPRY 784

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
                ++ +   I   +D+  ++++   + +  EPV +    P LL NG  GI  G AT I
Sbjct: 785  IFTMLSALTRHIFHPLDDPLLEYQY-EDNQRIEPVWYLPIIPMLLINGADGIGTGWATKI 843

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P+HN +++      +++  E  +           +      V       +    G  G  
Sbjct: 844  PNHNPRDVIANIRRMLNGDEPKMLTP--------WYKNFRGVIESVGHQKYLTAGTVGLL 895

Query: 252  VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
               +  + E+  G+W         Q  K  ++E +       +  + +     +   VR 
Sbjct: 896  DGKKIEISELPIGTW--------TQTYKENVLEPLLHGSDKAKAVIADYKEYNTDTTVRF 947

Query: 312  VLFPKNRSLDP-DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHR 368
            V+       +           L  + +               + +    + I  E+   R
Sbjct: 948  VISFLPGEYEKLYAEEGGFHRLFKLTSSISTASMNAFDDKNYLKRYAHANEIFMEFYTVR 1007

Query: 369  REVLFRRSSFRMQAIDRRV 387
             +   +R ++ +  +    
Sbjct: 1008 LDFYGKRRAYLLGMLQAEA 1026


>gi|112383300|gb|ABI17790.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 71/92 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y ++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDSAIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|224106109|ref|XP_002314046.1| predicted protein [Populus trichocarpa]
 gi|222850454|gb|EEE88001.1| predicted protein [Populus trichocarpa]
          Length = 1482

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 137/379 (36%), Gaps = 40/379 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ N K +     + +  + ++++   +R+IP + DG KP  R+I+    +    
Sbjct: 664  EPGTHLDHNQKIIKYSDFINKELILFSMAD-LQRSIPSMVDGLKPGQRKILFCSFKRNFV 722

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NI 121
              A   K ++  G V      H HG+QS+  +++ +AQ F       L+   G FG  ++
Sbjct: 723  KEA---KVSQFSGYVSEHSAYH-HGEQSLAGTIIGMAQDFVGSNNINLLQPNGQFGTRSV 778

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   +++ +   +    D+  +D+ D  + +  EP  +    P +L NG  
Sbjct: 779  GGKDHASARYIYTQLSPITRFLFPKDDDGLLDYLDE-DGQTIEPTWYMPIIPTVLVNGCE 837

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP++N +++      L++   +              P        + +I +
Sbjct: 838  GIGTGWSTFIPNYNPRDVVANIRRLLNGEMME-------------PMNPWYRGFKGTIEK 884

Query: 242  SY--RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----- 294
                  G   + V     + EV   +  I  TE+P +         +  +    R     
Sbjct: 885  GASKEGGCSSYTVNGV--INEVNETTLRI--TELPIRRWTDDYKAFLNSVTEGTRDENGN 940

Query: 295  ---IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV-LSMGR 350
                P ++D R    +         +         E +     + T    +         
Sbjct: 941  LPKDPFVKDFRKYGDDAAVHFEVQLSEENMLVAKQEGLLKKFKLTTTISTSNMHLFDSAG 1000

Query: 351  VPQVMPLDGILKEWLAHRR 369
            V +       + E   H R
Sbjct: 1001 VIKKYDNPEQILENFFHLR 1019


>gi|62005851|dbj|BAD91317.1| putative DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130112|gb|ACV95504.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130128|gb|ACV95512.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 58/83 (69%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PHGD S+Y +LVR+AQP+  RYP
Sbjct: 61  PHGDSSIYGTLVRMAQPWSLRYP 83


>gi|313192272|emb|CBY05944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/98 (54%), Positives = 74/98 (75%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           GDSAAA RYT  R+ ++A  ++  ++++ V F D Y +
Sbjct: 62  GDSAAAMRYTVIRLAKIAHQLMADLEKETVYFLDKYED 99


>gi|5453252|gb|AAD43501.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 81

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 63/81 (77%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ + E G+    ++KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKSYKKSARIVGDVMGKYHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +Y+++VR AQ F  RYPL+ G
Sbjct: 61  IYEAMVRKAQDFSYRYPLVDG 81


>gi|310722215|ref|YP_003969039.1| DNA topoisomerase subunit [Aeromonas phage phiAS4]
 gi|306021058|gb|ADM79593.1| DNA topoisomerase subunit [Aeromonas phage phiAS4]
          Length = 547

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 90/468 (19%), Positives = 180/468 (38%), Gaps = 38/468 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+    L+  +    L +A+ T++ERAIP + DGFKPV R  ++   E        F K 
Sbjct: 102 NLHNRHLQSIINNEALEFAMYTVEERAIPSIIDGFKPVQRFFMYRALEYAKQNKTKFNKV 161

Query: 76  ARIVGEVIGK-LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           A + G V     H HG+ S   +   +A  +    P++ G GNFG+     AAA RY   
Sbjct: 162 AALAGGVSEAGYH-HGEGSAASAGQLIANTWNNNIPVLEGDGNFGSRLVQQAAAPRYVFC 220

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ Q    I + +    V      + E   P  +    P +LANG  GIA G AT+I  H
Sbjct: 221 RVHQNFWDIYKDISLSPVHP----DPEHLPPRFYLPVIPMVLANGVKGIATGYATTIFPH 276

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + + + +  LA +   EI   ++                   + IV           +  
Sbjct: 277 SYESLVKCTLAAVKGEEIPEPEVQFPCF--------------KGIVRRINS--KSIEIEG 320

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            + +     G   +++TE+P    +   +E ++ L   +    +   ++++++  R  + 
Sbjct: 321 LYELV----GQTKLIITEVPV---RYDRLEYVSILDKLEEQGKIVGYKEQTSDGFRFEVT 373

Query: 315 PKN-------RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGILKEWLA 366
            K           +P++  E I  + ++      N+ VL       +      ++++++ 
Sbjct: 374 LKRQDKFGELMEKNPEVAHERIIKMFNLRQNLSQNITVLDENGKLAEYECAADLIRDFVE 433

Query: 367 HRREVLFRRSSFRMQAIDRRVEI-LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           +R++   +R  F  +  +   ++           I+E I +           V       
Sbjct: 434 YRKKYTNQRVIFEKEKAEYSRDLAWAKFAFVNEVIEEKIVLRGKSKAQLIAEVKSKPNMA 493

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
              + ++ + +  L + E ++++ E      E +   S     +   +
Sbjct: 494 GFENELVGMSIYRLTEDETHKLQEEALKQTKEYDYWSSTTPENEYVKD 541


>gi|304368196|gb|ADM26747.1| ParC [Acinetobacter baumannii]
          Length = 98

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 49/98 (50%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDYACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
            D   S AA RYTEA+++  +EL+L  + +   +++D 
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDN 98


>gi|112383302|gb|ABI17791.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 72/92 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDYAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDSSEREP 92


>gi|34604732|gb|AAQ79817.1| GyrA [Escherichia coli]
          Length = 79

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 53/79 (67%), Positives = 68/79 (86%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAA 127
           Y L+ GQGNFG+IDGDSAA
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|37731960|gb|AAO23340.1| type II topoisomerase [Strigomonas culicis]
          Length = 1230

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 88/567 (15%), Positives = 200/567 (35%), Gaps = 49/567 (8%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N  N +  ++ + K +S+   + +  + +AL+    RAI    DG KP  R+I+ A
Sbjct: 644  MTKANAFNGDVDIDRSKKVLSIPDFVHKEMVHFALAG-NARAIAHSVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQG 116
            + + G    A   K A++ G +      H HG+ S+ +++V++AQ F       L+  +G
Sbjct: 703  LFKRGKAESA---KVAQLSGYISEVSSFH-HGEMSLQETIVKMAQNFTGGNNINLLVPEG 758

Query: 117  NFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
             FG+    G+  AA RY   ++++ A ++    DE  +D+ +            P   P 
Sbjct: 759  QFGSRQQLGNDHAAPRYIFTKLSRFARVLFPEDDEPLLDYTEEEGTTTEPNHYVP-IIPM 817

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--EISIEKLLEYIIGPDFPTGGII 232
            LL NG+ GI  G A++IPS++  ++     ++I+    +  +++L+ + +G      G +
Sbjct: 818  LLCNGSVGIGFGFASNIPSYHPLDVSAVVRSMINGETAKQVVKRLVPWAVGF----QGTV 873

Query: 233  VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
                E            F    ++   +       I V+E+P+          I+ L   
Sbjct: 874  RRGPEG----------EFIAVGKYSAYKNNY----IHVSELPWTTSIEAFRGHISNLANM 919

Query: 293  KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV- 351
              +  + D           +                +     +  +  +N  V S     
Sbjct: 920  DVVQRIADY-----SGANHIDIDLIVREGSVTTWSEVEADLALSQKIYINGTVFSPSGTL 974

Query: 352  -PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             P    L  IL+     R  +  +R + ++  ++  +  L+      ++  +        
Sbjct: 975  APLEGDLSPILQRHYDRRLNLYKKRRARQLGLLEHDLACLESTRKFVMHFRQGKIDFMTA 1034

Query: 411  DK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                  K          + + D IL   +    +    ++  ++  L    E++      
Sbjct: 1035 TDETLQKVCDRLHLQKVDAKYDYILKKPITFFTRTNTTKLDDDIKKLQDSIEEMKKTT-- 1092

Query: 468  GKQQWNQIACEIREVKEIFSKSTDLGRRRTT--FCEVSRADKATLQQAMIEKEPITVVIS 525
                      E+ +  ++F +   +          +        ++     +  + V+  
Sbjct: 1093 ---PTKMWLRELDQFDKLFEEYERVLNNSIQKEMRDKMPGKGELVRSLQAPEIELEVLKG 1149

Query: 526  NRGWIRSLKSHSVDLSALHFKEGDSLK 552
             +     ++++         ++     
Sbjct: 1150 VKERPMRIQAYQHVPPPPSKRKPQDGM 1176


>gi|326536573|ref|YP_004301004.1| gp52 topoisomerase II medium subunit [Aeromonas phage 65]
 gi|312262919|gb|ADQ53175.1| gp52 topoisomerase II medium subunit [Aeromonas phage 65]
          Length = 450

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 150/380 (39%), Gaps = 45/380 (11%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   S+   ++     +    I  RA+P L DG KP  R ++++  +        FKK+
Sbjct: 2   KIVERSISSYIDNEAKEFTFYVIVNRALPSLIDGLKPSQRFVLYSAIK---TCQCGFKKN 58

Query: 76  ARIVGEVIGKL-HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           A + G V+    +PHG+ S +D   ++A  +   YP++ G+GNFG+     AA  RY   
Sbjct: 59  AYLCG-VLSDYGYPHGETSAFDVASKMATEYANNYPVLEGRGNFGSRANRDAAEPRYIFC 117

Query: 135 RMTQVAELILQG----VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           ++      I +     +D + V +          P  +    P +L NG  GIA   AT+
Sbjct: 118 KLNSNFHDIFKDEDLLLDNEIVSYS--------IPKFYLPVIPFVLLNGVKGIASAYATN 169

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP H++  + +  +  +   +    K+        +P+          I +        +
Sbjct: 170 IPPHDIHSVIDECVKYVKTGKCDNPKV-------KYPSF---------IGKVNTPDNEQW 213

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
                + ++    G   + + +IP+   + + +    +LI + +I   ++I  E     R
Sbjct: 214 TNEGVYELQ----GKTKLTIKDIPFSYDRIKYVSIRNKLIDSDQIVGYDEIEGEGDFTFR 269

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +         D D   E+I    D+       +  +        M    +      H RE
Sbjct: 270 V-----TLKRDFDTSHENIMAKFDLRENINPTLVTIGPYS---NMVTQEMDLRIYKHSRE 321

Query: 371 VLFRRSSFRMQAIDRRVEIL 390
           ++    ++R+  +D+R++ +
Sbjct: 322 LIADFINYRLPIVDQRIQNM 341


>gi|27542577|gb|AAO16889.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|27542583|gb|AAO16892.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 87

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/86 (58%), Positives = 69/86 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDE 149
           DSAAA RYTE R+ ++A  ++  +++
Sbjct: 62  DSAAAMRYTEIRLAKIAHELMADLEK 87


>gi|312877897|ref|ZP_07737842.1| DNA gyrase repeat beta-propeller [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795323|gb|EFR11707.1| DNA gyrase repeat beta-propeller [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 237

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 5/172 (2%)

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           +  G AI  LI +  ++ I             L++ +  G    V  SE    T+ GK  
Sbjct: 7   QAKGTAIVNLIQIGKDEKITATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKA 66

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           + ++ ++ +  V   +G D + +V  +   ++F+ + +  M R  +GV+  + + G    
Sbjct: 67  ITLADDDSLVDVKLTSGNDEIVLVSSSGYCVVFNENDVRVMGRSAQGVKGMTLESGDFI- 125

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           V   K  +G   +      + +          KRG  G L  K   ++GK +
Sbjct: 126 VGMEKANDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTDKTGKIV 177



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 7/171 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              A+   + DSL         D I+L+S+ G        ++       + +   + L  
Sbjct: 63  GKKAITLADDDSLVDVKLTSGNDEIVLVSSSGYCVVFNENDVRVMGRSAQGV-KGMTLES 121

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656
              IV     +    LL V+  G     E  E     R  K  L     +K   +V +  
Sbjct: 122 GDFIVGMEKANDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTDKTGKIVDIKM 181

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
               D + +       +   + Q+P   R  +GV+L    DG    V    
Sbjct: 182 VNDDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRI-DGDSIKVSSIA 231


>gi|112383310|gb|ABI17795.1| gyrase [Streptococcus suis]
 gi|112383312|gb|ABI17796.1| gyrase [Streptococcus suis]
 gi|112383314|gb|ABI17797.1| gyrase [Streptococcus suis]
 gi|112383316|gb|ABI17798.1| gyrase [Streptococcus suis]
 gi|112383318|gb|ABI17799.1| gyrase [Streptococcus suis]
 gi|112383320|gb|ABI17800.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 73/92 (79%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD+++YD++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDKAIYDAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V++ D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNYADNYDASEREP 92


>gi|1834317|dbj|BAA11510.1| DNA topoisomerase II [Dictyostelium discoideum]
          Length = 1282

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 168/411 (40%), Gaps = 43/411 (10%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            ++ +  ++ ++K ++    + +  + Y+ +    R+IP L DG KP  R+I+ A  +  L
Sbjct: 774  TDMSQGIDHSIKEITYPDFINKELIHYSWAANL-RSIPSLIDGLKPGQRKILFASFKRRL 832

Query: 67   DFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                   K +++ G V  +   H HG+QS+  ++V++A  F      PL++  G FG   
Sbjct: 833  TNE---IKVSQLSGYVAEQTSYH-HGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRL 888

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED---SEPVVFPSKFPNLLA 177
              G  +A+ RY   ++  V  L    +D    D    Y EE+    +P  +    P LL 
Sbjct: 889  QGGSDSASARYI-LQLEPVGTLPFNELD----DPLLNYLEEEGESIQPDYYIPIIPMLLV 943

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG+ GI VGM+TSIP  +  +I +  L L  N +++++KL+ +  G              
Sbjct: 944  NGSEGIGVGMSTSIPLFSPIDIID-QLMLRLNNQVALKKLIPWYRG-------------- 988

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
                +    R  +R         +      + +TE+P     S   E + +LI    I  
Sbjct: 989  -FKGTISPDRHTYRTNGV-----IKLVGRNLEITELPIGRWTSDYKEVLNDLIDKDVIKS 1042

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             ++   E++    I+L         DL    +  L  +      ++         Q +  
Sbjct: 1043 FQESNTENSVHFTILLNNNQLEQMEDLTENELIKLFKLSASLNFHLTCFDENSKIQKL-- 1100

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
               ++E +    +V  +    R + + + ++     L   +   E+IA  +
Sbjct: 1101 -ESVEEIIDQFYKVRLQFYGKRREYLLKSLDNQIKRLTTTIQFLEVIASGK 1150


>gi|328725424|ref|XP_003248474.1| PREDICTED: DNA gyrase subunit B-like, partial [Acyrthosiphon pisum]
          Length = 619

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 58/170 (34%), Gaps = 7/170 (4%)

Query: 589 AIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            I   ++++ ++ I T             L+  +  G     + S      + GK  +  
Sbjct: 339 PIVNALEIDKDEMISTMIAVKDLSSEEDYLVFATKHGTVKRSKLSNFSRINKNGKIAINF 398

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVI 701
              +++  V    G   + +  ++  L+ F   ++  + R   GV+  + ++   +  + 
Sbjct: 399 KEGDELIAVRLTDGTKEIIIGTKHASLIRFDESKLRPLGRTAAGVKGITLREDDEVIGLD 458

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                +    +    + Y +  +     +  RGG G        ++G  +
Sbjct: 459 VTDEDQQDEILIVTEKGYGKRTSADQYRISNRGGKGIKTATLTEKNGNLV 508



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 7/130 (5%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           A    I L  + +++   V D   +  +L+V+ KG        +   + R GK     + 
Sbjct: 441 AGVKGITLREDDEVIGLDVTDEDQQDEILIVTEKGYGKRTSADQYRISNRGGKGIKTATL 500

Query: 647 EEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            EK   +  +  V GD  + +V  +  ++   +  I +  R  +GVRL    D      +
Sbjct: 501 TEKNGNLVCITTVNGDEDLMIVTNSGVIIRLHVADISQNGRSAQGVRLIRLGDNQHVATV 560

Query: 702 CFKICEGLTW 711
                +    
Sbjct: 561 AKVEPDENEI 570


>gi|291533756|emb|CBL06869.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Megamonas hypermegale ART12/1]
          Length = 278

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 9/218 (4%)

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           +  KE D ++  +   T + IL  +  G  Y L    +       +  AI  L+ L   +
Sbjct: 1   MGTKEEDYVENMIITSTHNTILFFTNKGLVYQLKGYEIPESGRTAKGTAIVNLLPLAKEE 60

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKV 656
            I        +     L + +  G       SE   N +K G   L +   +++  V   
Sbjct: 61  TITAIIPIKEFSKDRYLFMATRHGIVKKTGLSEFDTNRKKTGLIALSLKENDELIGVKLT 120

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            G+  + +   +   + F+   +  M R  +GV     K G  + +    I +    +  
Sbjct: 121 DGNRQIIIGTRDGMSICFNEQDVRPMGRTARGVIGIKLK-GEDTVIGMDNIRDDCEVLTV 179

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + +           RGG+G +  K   ++G  + 
Sbjct: 180 TEHGFGKRTATSEYRTQTRGGIGLINIKVTEKTGFVIG 217



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 7/221 (3%)

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           +  T   +    + +  + +       +V                L AL  KE D L   
Sbjct: 58  KEETITAIIPIKEFSKDRYLFMATRHGIVKKTGLSEFDTNRKKTGLIALSLKENDELIGV 117

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                  +I++ + DG +      ++         +   I L     ++        C++
Sbjct: 118 KLTDGNRQIIIGTRDGMSICFNEQDVRPMGRTARGVIG-IKLKGEDTVIGMDNIRDDCEV 176

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHV-AVVGENRKL 670
           L V+  G       SE    TR G   + +   EK   +  +  V       ++     +
Sbjct: 177 LTVTEHGFGKRTATSEYRTQTRGGIGLINIKVTEKTGFVIGIKVVDSQQEFMLISTEGIV 236

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGL 709
           +  +I+++  + R  +GV++ +   +  ++ +  F+I E  
Sbjct: 237 IRSNIEEVSVIGRNTQGVKMMNMDNNDKVAALAAFEIKEDD 277


>gi|118139708|gb|ABK63300.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 89

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/88 (64%), Positives = 72/88 (81%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            +    A+KKSARIVG+VIGK HPHGD SV+D+LVR+AQ F  R PL+ GQGNFG++DGD
Sbjct: 2   KITTKNAYKKSARIVGDVIGKYHPHGDTSVHDALVRMAQSFSMRAPLVDGQGNFGSVDGD 61

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAV 152
           SAAA RYTEARMT++AE +L+ +D+D V
Sbjct: 62  SAAAMRYTEARMTRIAEEVLRDLDKDTV 89


>gi|112383308|gb|ABI17794.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 72/92 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDFAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDSNEREP 92


>gi|259130110|gb|ACV95503.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130130|gb|ACV95513.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|270055922|gb|ACZ59207.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 59/83 (71%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PHGD S+Y++LVR+AQP+  RYP
Sbjct: 61  PHGDSSIYNTLVRMAQPWSLRYP 83


>gi|281208664|gb|EFA82840.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1524

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 123/287 (42%), Gaps = 30/287 (10%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
             +K V +   +++  + ++++   ER+IP + DGFK   R+I+ +  +  L       K 
Sbjct: 788  GIKKVKITDFIDKELILFSIAD-CERSIPSIVDGFKTSQRKILFSCFKRNL---KKEIKV 843

Query: 76   ARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAY 129
            A+++G V  +   H HGDQS+  +++ LAQ +       ++   G FG+    G  ++A 
Sbjct: 844  AQLIGYVSEQSAYH-HGDQSLASAIIGLAQTYVGANNINVLYPGGGFGSRLAGGKDSSAP 902

Query: 130  RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
            RY   R+ ++A  +    D   +    T + +  +P  +    P +L NG+ GI  G ++
Sbjct: 903  RYINTRLEEIARTLFPEEDHALLSH-LTDDGKRVQPKWYIPVIPMILVNGSKGIGTGWSS 961

Query: 190  SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            +IP++N +++ E    LI+  E+                        +  +E        
Sbjct: 962  TIPNYNPRDLIENMKLLIEGKELKPIVP--------------WYRGFKGTIELQTGKTSN 1007

Query: 250  FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
            F  +  W         + + +TE+P +   +   + +  LI  +   
Sbjct: 1008 FVAKGVWR----KLDEYRLEITELPIESWTNDFKDLVQNLIDPQGKQ 1050


>gi|259130108|gb|ACV95502.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130126|gb|ACV95511.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 59/83 (71%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PHGD S+YD+LVR+AQP+  RYP
Sbjct: 61  PHGDISIYDTLVRMAQPWSLRYP 83


>gi|301109930|ref|XP_002904045.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
 gi|262096171|gb|EEY54223.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
          Length = 807

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/394 (20%), Positives = 150/394 (38%), Gaps = 40/394 (10%)

Query: 8   NSNTLVEENVKAVSLRF------ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
              T V+ +V  +           + +  + ++++    R+IP +R  FKP  R+++   
Sbjct: 356 EPGTYVDYDVDEMGYPEYAYRAGFVNKELILFSMADNI-RSIPSVR--FKPSQRKVLFCC 412

Query: 62  SEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGN 117
            +  L       K A++ G V      H HG+ S+   +V +AQ F       L+   G 
Sbjct: 413 FKRNLRAE---LKVAQLAGYVSEHSAYH-HGEASLQGCIVNMAQDFVGSNNIHLLPPIGQ 468

Query: 118 FGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           FG+    G  AA+ RY    + Q+  LI   +D D + +  + + +  EP  +    P +
Sbjct: 469 FGSRLMGGKDAASARYIFTNLEQLTRLIYHPLDNDCLKY-LSEDGQSIEPEWYIPIIPMV 527

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           L NG+ GI  G +   P++N  +I +    +I+  E          I P  P        
Sbjct: 528 LVNGSDGIGTGWS---PNYNPLDIIKGLRQMINGEE----------IAPLTPWYREFTGH 574

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
                 S     G + V+  + V +       +VV+E+P +       + +  L+ A  I
Sbjct: 575 IVEKANSRGTDTGNYIVQGLYEVTDDST----LVVSELPVKSWTQTYKQFLEGLLDAGTI 630

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQ 353
              ++   +      I +  K  S D       I     +E+    +   L    G + +
Sbjct: 631 KDFKENHTDVKVLFTITMEQKALS-DVTKAPGGIVKKFKLESSLSTSNMHLFDAAGHIKK 689

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
                 I+ E+   R E   RR    +Q +  ++
Sbjct: 690 YENPKEIMAEFYGIRLEYYGRRKKAMLQKLQDQI 723


>gi|217069477|gb|ACJ83227.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 199

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 90/200 (45%), Positives = 135/200 (67%), Gaps = 2/200 (1%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT +AE +L+ +++D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 1   TEARMTILAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNI 60

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +  L LIDN   S+E+++ +I GPDFPTGG I+  ++ I+E+YR GRG  +
Sbjct: 61  PPHSLNELTDGLLYLIDNKNASLEEIMHFIKGPDFPTGG-IIFGKKGIIEAYRTGRGRVK 119

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  + E       IV+ E+PYQ  K+RLIE+IAEL   K+I  + ++RDES  +   
Sbjct: 120 VRAKTHI-EKRANKDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIR 178

Query: 312 VLFPKNRSLDPDLLMESIFM 331
           V+    R    ++++ ++F 
Sbjct: 179 VVIELKRDAMSEIVLNNLFK 198


>gi|66392041|ref|YP_238966.1| gp52 [Aeromonas phage 31]
 gi|62114878|gb|AAX63726.1| gp52 [Aeromonas phage 31]
          Length = 554

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 177/458 (38%), Gaps = 34/458 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   SL+  +    L +A+ T++ERAIP L DG KPV R  ++   E      + F K 
Sbjct: 109 ELHNRSLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNRSKFNKV 168

Query: 76  ARIVGEVIGK-LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           A + G V     H HG+ S   +   +A  +    P++ G GNFG+     AAA RY   
Sbjct: 169 AALAGGVSEAGYH-HGEGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAAPRYVFC 227

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ Q    I + ++   V        E   P  +    P +LANG  GIA G AT+I  H
Sbjct: 228 RVHQNFWDIYRDIELAPVHPEP----EHLPPRYYLPVIPMVLANGVKGIATGYATNIFPH 283

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + + + +   A I+   I   ++        FP    ++          R+      V  
Sbjct: 284 SYKSLIKCTKAAIEGKPIPRLEVQ-------FPEFSGVIR---------RVSDKTIEVEG 327

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES----AEDVR 310
            + +     G   + +TE+P +  +   +  + +L    +I   ++             R
Sbjct: 328 LYELS----GQTKLTITELPVKFDRLSYVILLDKLKDQGKIVSYKEQHKNGFRFDVTLKR 383

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGILKEWLAHRR 369
              F +    +P+   E I  +  +      N+ VL+      +    + ++++++ HRR
Sbjct: 384 QDKFGEQLQNNPEATHEKIIKMFGLRQVLTQNITVLNPEGKLAEYECAEDVIRDFVEHRR 443

Query: 370 EVLFRRSSFRMQAIDR--RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           +    R  +  Q  +    +   K   I  +  DEI    + + +    + S        
Sbjct: 444 KFTAERVEYERQKSEHARDLAWAKFKFINMVIDDEITIKGKQKAELVQEIASNPDFKGF- 502

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
            + ++ + +  + + E Y+++ E        +   +  
Sbjct: 503 ENELVGMSIYRMTEDETYKLQDEAIKQGKLYDYWVNTT 540


>gi|37651722|ref|NP_932596.1| gp52 [Aeromonas phage 44RR2.8t]
 gi|34733022|gb|AAQ81559.1| topoisomerase II medium subunit [Aeromonas phage 44RR2.8t]
          Length = 555

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/454 (20%), Positives = 175/454 (38%), Gaps = 34/454 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   SL+  +    L +A+ T++ERAIP L DG KPV R  ++   E      + F K 
Sbjct: 109 ELHNRSLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNRSKFNKV 168

Query: 76  ARIVGEVIGK-LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           A + G V     H HG+ S   +   +A  +    P++ G GNFG+     AAA RY   
Sbjct: 169 AALAGGVSEAGYH-HGEGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAAPRYVFC 227

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ Q    I + ++   V        E   P  +    P +LANG  GIA G AT+I  H
Sbjct: 228 RVHQNFWDIYRDIELAPVHPEP----EHLPPRYYLPVIPMVLANGVKGIATGYATNIFPH 283

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + + + +   A I+   I   +    +  P+F                 R+      V  
Sbjct: 284 SYKSLIKCTKAAIEGKPIPRLE----VQFPEFSG------------VIRRVSAKTIEVEG 327

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES----AEDVR 310
            + +     G   + +TE+P +  +   +  + +L    +I   ++             R
Sbjct: 328 LYELS----GQTKLTITELPVKFDRLSYVILLDKLKDQGKIVSYKEQHKNGFRFDVTLKR 383

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGILKEWLAHRR 369
              F +    +P+   E I  +  +      N+ VL+      +    + ++++++ HRR
Sbjct: 384 QDKFGEQLQNNPEATHEKIIKMFGLRQVLTQNITVLNPEGKLAEYECAEDVIRDFVEHRR 443

Query: 370 EVLFRRSSFRMQAIDR--RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           +    R  +  Q  +    +   K   I  +  D+I    + + +    + S        
Sbjct: 444 KFTAERVEYERQKSEHARDLAWAKFKFINMVIDDKITIKGKQKAELVKEIASNPDFKGF- 502

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
            + ++ + +  + + E Y+++ E        +  
Sbjct: 503 ENELVGMSIYRMTEDETYKLQDEAIKQGKLFDYW 536


>gi|259130104|gb|ACV95500.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130106|gb|ACV95501.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130120|gb|ACV95508.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130122|gb|ACV95509.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130124|gb|ACV95510.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 60/83 (72%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PHGD+S+YD+LVR+AQP+  RYP
Sbjct: 61  PHGDRSIYDTLVRMAQPWSLRYP 83


>gi|217069485|gb|ACJ83231.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 202

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 138/204 (67%), Gaps = 2/204 (0%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT +AE +L+ +++D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 1   TEARMTILAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNI 60

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +  L LIDN   S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +
Sbjct: 61  PPHSLNELIDGLLYLIDNKNASLEEIMQFIKGPDFPTGG-IIFGKKGIIEAYRTGRGRVK 119

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  + E       IV+ E+PYQ  K+RLIE+IAEL   K+I  + ++RDES  +   
Sbjct: 120 VRAKTHI-EKRANKDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIR 178

Query: 312 VLFPKNRSLDPDLLMESIFMLSDM 335
           V+    R    ++++ ++F  + M
Sbjct: 179 VVIELKRDAMSEIVLNNLFKSTTM 202


>gi|330801777|ref|XP_003288900.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
 gi|325081045|gb|EGC34576.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
          Length = 1162

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 122/285 (42%), Gaps = 39/285 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  +S    + +  + ++++   ER+IP + DG K   R+I+++  +  L       K 
Sbjct: 644 GVGKLSYTDFINKELILFSIAD-CERSIPSIVDGLKTSQRKILYSCFKRNL---KKEIKV 699

Query: 76  ARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAY 129
           A+++G V      H HG+ S+Y +++ +AQ +       L+   G +G     G  A++ 
Sbjct: 700 AQLIGYVSEHSAYH-HGEMSLYSTILGMAQEYIGSNNANLLYPSGAYGTRIQGGKDASSA 758

Query: 130 RYTEARMTQVAELILQGVDEDA----VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           RY   R+T VA  +    D++     VD     + +  +P  +    P +L NGT GI  
Sbjct: 759 RYIHTRLTDVARALYHPDDDNILACVVD-----DGKKVQPKHYIPIIPMILVNGTVGIGT 813

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G +T+IPS+N +++ E    L++  +  ++ +  +  G    TG I+   +         
Sbjct: 814 GWSTTIPSYNPRDLVENMKLLLN--KQELKPIQPWYRG---FTGEILESGKGG------- 861

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
               +  R  W             VTE+P         E + EL 
Sbjct: 862 ---QYLSRGVWR----KLSEHSFEVTELPINSWTQDYREFLDELE 899


>gi|71650226|ref|XP_813815.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
            Brener]
 gi|70878735|gb|EAN91964.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1230

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 159/433 (36%), Gaps = 43/433 (9%)

Query: 41   RAIPDLRDGFKPVHRRIIHA-MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDS 97
            RA+    DG KP  R+I+ A M   G +      K A++ G +      H HG+ S+ ++
Sbjct: 679  RALAHAVDGLKPSQRKILWAIMRRSGNESA----KVAQLSGYISEVSAFH-HGEMSLQET 733

Query: 98   LVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            ++++AQ F       L+  +G FG+    G+  AA RY   +++ +A ++    DE  +D
Sbjct: 734  IIKMAQNFTGGNNINLLIPEGQFGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLD 793

Query: 154  FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--E 211
            +  T   +  EP  +    P LL NG+ GI  G A++IP  +  ++  A  ++I+    +
Sbjct: 794  YV-TEEGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAK 852

Query: 212  ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
            + + +L+ + +G      G +    E   E    G   + V  R  V            T
Sbjct: 853  VVVRRLVPWAVGY----QGEVRRGPEG--EFIAAGSYQYYVDGRVHV------------T 894

Query: 272  EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331
            EIP+ +      + I+ L     +  + D           V      +            
Sbjct: 895  EIPWTLSIEAFRDHISVLASKDVVQRIADY-----SGANHVDIDLELTNGAMTTYAECES 949

Query: 332  LSDMETRFPLNMNVLSMGR--VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
               +  R  +N  V S      P    L  +L+     R ++  +R    +  ++  +  
Sbjct: 950  ELSLTQRIYINGTVFSPTGVLTPLEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAR 1009

Query: 390  LKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
             K  L    +  E    I N       K          ++  D +L   +    K     
Sbjct: 1010 EKSTLKFVTHFREGKIDIVNATDDSLAKTCSKLGMVRVDDSYDYVLRKPITFYTKTSLEN 1069

Query: 447  IKSELDNLLAEKE 459
            +  ++       +
Sbjct: 1070 LNRKISETEKRID 1082


>gi|217069473|gb|ACJ83225.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 200

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 90/199 (45%), Positives = 136/199 (68%), Gaps = 2/199 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H++ E+ +  L LIDN E S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +V
Sbjct: 61  PHSLNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V
Sbjct: 120 RAKTHI-EKRANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRV 178

Query: 313 LFPKNRSLDPDLLMESIFM 331
           +    R    ++++ ++F 
Sbjct: 179 VIELKRDAMSEIVLNNLFK 197


>gi|267151|sp|P30190|TOP2_TRYCR RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|162307|gb|AAA85575.1| DNA topoisomerase II [Trypanosoma cruzi]
 gi|737876|prf||1923363A DNA topoisomerase II
          Length = 1232

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 159/433 (36%), Gaps = 43/433 (9%)

Query: 41   RAIPDLRDGFKPVHRRIIHA-MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDS 97
            RA+    DG KP  R+I+ A M   G +      K A++ G +      H HG+ S+ ++
Sbjct: 679  RALAHAVDGLKPSQRKILWAIMRRSGNESA----KVAQLSGYISEVSAFH-HGEMSLQET 733

Query: 98   LVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            ++++AQ F       L+  +G FG+    G+  AA RY   +++ +A ++    DE  +D
Sbjct: 734  IIKMAQNFTGGNNINLLIPEGQFGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLD 793

Query: 154  FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--E 211
            +  T   +  EP  +    P LL NG+ GI  G A++IP  +  ++  A  ++I+    +
Sbjct: 794  YV-TEEGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAK 852

Query: 212  ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
            + + +L+ + +G      G +    E   E    G   + V  R  V            T
Sbjct: 853  VVVRRLVPWAVGY----QGEVRRGPEG--EFIAAGSYQYYVDGRVHV------------T 894

Query: 272  EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331
            EIP+ +      + I+ L     +  + D           V      +            
Sbjct: 895  EIPWTLSIEAFRDHISVLASKDVVQRIADY-----SGANHVDIDLELTNGAMTTYAECES 949

Query: 332  LSDMETRFPLNMNVLSMGR--VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
               +  R  +N  V S      P    L  +L+     R ++  +R    +  ++  +  
Sbjct: 950  ELSLTQRIYINGTVFSPTGVLTPLEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAR 1009

Query: 390  LKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
             K  L    +  E    I N       K          ++  D +L   +    K     
Sbjct: 1010 EKSTLKFVTHFREGKIDIVNATDDSLAKTCSKLGMVRVDDSYDYVLRKPITFYTKTSLEN 1069

Query: 447  IKSELDNLLAEKE 459
            +  ++       +
Sbjct: 1070 LNRKISETEKRID 1082


>gi|322816271|gb|EFZ24640.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 159/433 (36%), Gaps = 43/433 (9%)

Query: 41   RAIPDLRDGFKPVHRRIIHA-MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDS 97
            RA+    DG KP  R+I+ A M   G +      K A++ G +      H HG+ S+ ++
Sbjct: 679  RALAHAVDGLKPSQRKILWAIMRRSGNESA----KVAQLSGYISEVSAFH-HGEMSLQET 733

Query: 98   LVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            ++++AQ F       L+  +G FG+    G+  AA RY   +++ +A ++    DE  +D
Sbjct: 734  IIKMAQNFTGGNNINLLIPEGQFGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLD 793

Query: 154  FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--E 211
            +  T   +  EP  +    P LL NG+ GI  G A++IP  +  ++  A  ++I+    +
Sbjct: 794  YV-TEEGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAK 852

Query: 212  ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
            + + +L+ + +G      G +    E   E    G   + V  R  V            T
Sbjct: 853  VVVRRLVPWAVGY----QGEVRRGPEG--EFIAAGSYQYYVDGRVHV------------T 894

Query: 272  EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331
            EIP+ +      + I+ L     +  + D           V      +            
Sbjct: 895  EIPWTLSIEAFRDHISVLASKDVVQRIADY-----SGANHVDIDLELTNGAMTTYAECES 949

Query: 332  LSDMETRFPLNMNVLSMGR--VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
               +  R  +N  V S      P    L  +L+     R ++  +R    +  ++  +  
Sbjct: 950  ELSLTQRIYINGTVFSPTGVLTPLEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAR 1009

Query: 390  LKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
             K  L    +  E    I N       K          ++  D +L   +    K     
Sbjct: 1010 EKSTLKFVTHFREGKIDIVNATDDSLAKTCSKLGMVRVDDSYDYVLRKPITFYTKTSLEN 1069

Query: 447  IKSELDNLLAEKE 459
            +  ++       +
Sbjct: 1070 LNRKISETEKRID 1082


>gi|71744648|ref|XP_803868.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70831119|gb|EAN76624.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 158/426 (37%), Gaps = 46/426 (10%)

Query: 3    VDNISNSNTLVEENVKAVS-----LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
             D ++ +N    E     S     +   + +  + +AL     RA+    DG KP  R+I
Sbjct: 637  KDWMTKANAFTGEVDIDRSKKMLTVTDFVHKEMVHFAL-VGNARALAHSVDGLKPSQRKI 695

Query: 58   IHA-MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPFV--QRYPLI 112
            I A M   G +      K A++ G +      H HG+ S+ ++++++AQ F       L+
Sbjct: 696  IWALMRRSGNEAA----KVAQLSGYISEASAFH-HGETSLQETMIKMAQSFTGGNNVNLL 750

Query: 113  SGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
              +G FG+    G+  AA RY   ++++VA L+    D+  +D+      +  EP  +  
Sbjct: 751  VPEGQFGSRQQLGNDHAAPRYIFTKLSKVARLLFPSEDDPLLDYI-VEEGQQVEPNHYVP 809

Query: 171  KFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--EISIEKLLEYIIGPDFPT 228
              P LL NG+ GI  G A++IP  +  ++  A  A+I     +  + +L+ + +G     
Sbjct: 810  ILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRAMISGEAAKSVVRRLVPWAVGF---- 865

Query: 229  GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
             G I    E   E   +G   +    R  V            TE+P+        E I+ 
Sbjct: 866  QGEIRRGPEG--EFIAVGTYTYCKGGRVHV------------TELPWTCSVEAFREHISY 911

Query: 289  LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
            L     +  + D           V      +               +  R  +N  V S 
Sbjct: 912  LATKDIVNRIADY-----SGANHVDIDVEVAQGAVNTYAECESELGLTQRIHINGTVFSP 966

Query: 349  GRV--PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
                 P    L  +L+     R ++  +R    +  +++ +   K  L    +       
Sbjct: 967  NGTLSPLESDLTPVLQWHYDRRLDLYKKRRQRNLMLLEQELAREKSTLKFVQHFRAGHID 1026

Query: 407  IRNEDK 412
              N  +
Sbjct: 1027 FANATE 1032


>gi|254993922|ref|ZP_05276112.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J2-064]
          Length = 492

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 177/427 (41%), Gaps = 23/427 (5%)

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
             V    + P++M +  +L  ++ H++E++ +RS + ++    R  IL+GL+ A   +DE
Sbjct: 5   NMVAINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQHILEGLIKALSILDE 64

Query: 403 IIAIIRNEDKPKP---VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           +I +IR     +     + +++  +E Q +AI++L+L  L   + ++++SE  +L  +  
Sbjct: 65  VIKLIRGSKDKRDAKLNLQTKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQIS 124

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            ++ +L    +    +  E+ E+K+ +  +      R T  +    +     + ++  E 
Sbjct: 125 VLEKILGDEAELIAVLKEELAEIKKKYKTA------RRTEVQAEITEIKIDTEVLVANED 178

Query: 520 ITVVISNRGWIRSLKSHSV---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           + V ++  G+++     S    + + L  KE D        ++ D +LL ++ G     P
Sbjct: 179 VIVSVTKEGYVKRTSQRSYAASNGAELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYRP 238

Query: 577 AGNLLSGRGHG---EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
              L   R          L  DL+  ++I +A     +    + L V+  G       + 
Sbjct: 239 VHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITN 298

Query: 631 IIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGV 687
                  K    +K+  ++++  V  + G + + +  +N   L +SI +IPE   R  GV
Sbjct: 299 YKPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGV 358

Query: 688 RLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  + K    +   I     E    + +  R   +           R   G L+ +    
Sbjct: 359 KAINLKQDDIVIGGIVLMPNEQKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKS 418

Query: 747 S-GKFLS 752
           +  +F+ 
Sbjct: 419 NPHRFIG 425


>gi|224055129|ref|XP_002298421.1| predicted protein [Populus trichocarpa]
 gi|222845679|gb|EEE83226.1| predicted protein [Populus trichocarpa]
          Length = 1468

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 134/380 (35%), Gaps = 43/380 (11%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T +++N K +     + +  + ++++   +R+IP + DG KP  R+I+    +    
Sbjct: 661  EPGTHLDQNQKLIKYSDFINKELILFSMAD-LQRSIPSMVDGLKPGQRKILFCSFKRN-- 717

Query: 68   FGAAFKKSARI---VGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG- 119
                F K A+I    G V      H HG+QS+  +++ +AQ F       L+   G FG 
Sbjct: 718  ----FVKEAKISQFSGYVSEHSAYH-HGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGT 772

Query: 120  -NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
             ++ G   A+ RY   +++ +   +    D+  +D+ D    +  EP  +    P +L N
Sbjct: 773  RSVGGKDHASARYIYTQLSPITRFLFPKDDDGLLDYLDED-GQTIEPNWYMPIIPMVLVN 831

Query: 179  GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
            G  GI  G +T IP++N ++I      L              + G             + 
Sbjct: 832  GCEGIGTGWSTFIPNYNPRDIVANIRRL--------------LNGEMMEPMNPWYRGFKG 877

Query: 239  IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR---- 294
             +E       G        + EV   +  I  TE+P +         +  +    R    
Sbjct: 878  TIEKGASKEAGCSYTVNGVINEVNETTLRI--TELPIRRWTDDYKAFLNSVTEGNRDENG 935

Query: 295  ----IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV-LSMG 349
                 P ++D R    +   +     +         E +     + T    +        
Sbjct: 936  NLPKDPFIKDFRKYGDDATVVFEVLLSEENMMIAKQEGLLKKFKLTTTISTSNMHLFDSA 995

Query: 350  RVPQVMPLDGILKEWLAHRR 369
             V +       + E   H R
Sbjct: 996  GVIKKYDNPEQILEEFFHLR 1015


>gi|261331231|emb|CBH14221.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1221

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 158/426 (37%), Gaps = 46/426 (10%)

Query: 3    VDNISNSNTLVEENVKAVS-----LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
             D ++ +N    E     S     +   + +  + +AL     RA+    DG KP  R+I
Sbjct: 637  KDWMTKANAFTGEVDIDRSKKMLTVTDFVHKEMVHFAL-VGNARALAHSVDGLKPSQRKI 695

Query: 58   IHA-MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPFV--QRYPLI 112
            I A M   G +      K A++ G +      H HG+ S+ ++++++AQ F       L+
Sbjct: 696  IWALMRRSGNEAA----KVAQLSGYISEASAFH-HGETSLQETMIKMAQSFTGGNNVNLL 750

Query: 113  SGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
              +G FG+    G+  AA RY   ++++VA L+    D+  +D+      +  EP  +  
Sbjct: 751  VPEGQFGSRQQLGNDHAAPRYIFTKLSKVARLLFPSEDDPLLDYI-VEEGQQVEPNHYVP 809

Query: 171  KFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--EISIEKLLEYIIGPDFPT 228
              P LL NG+ GI  G A++IP  +  ++  A  A+I     +  + +L+ + +G     
Sbjct: 810  ILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRAMISGEAAKSVVRRLVPWAVGF---- 865

Query: 229  GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
             G I    E   E   +G   +    R  V            TE+P+        E I+ 
Sbjct: 866  QGEIRRGPEG--EFIAVGTYTYCKGGRVHV------------TELPWTCSVEAFREHISY 911

Query: 289  LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
            L     +  + D           V      +               +  R  +N  V S 
Sbjct: 912  LATKDIVNRIADY-----SGANHVDIDVEVAQGAVNTYAECESELGLTQRIHINGTVFSP 966

Query: 349  GRV--PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
                 P    L  +L+     R ++  +R    +  +++ +   K  L    +       
Sbjct: 967  NGTLSPLESDLTPVLQWHYDRRLDLYKKRRQRNLTLLEQELAREKSTLKFVQHFRAGHID 1026

Query: 407  IRNEDK 412
              N  +
Sbjct: 1027 FANATE 1032


>gi|34604734|gb|AAQ79818.1| GyrA [Escherichia coli]
          Length = 79

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/79 (67%), Positives = 68/79 (86%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAA 127
           Y L+ GQGNFG+IDGDSAA
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|221504453|gb|EEE30126.1| hypothetical protein TGVEG_051980 [Toxoplasma gondii VEG]
          Length = 1211

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 115/400 (28%), Positives = 187/400 (46%), Gaps = 36/400 (9%)

Query: 129 YRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            RYTE R+T+  E  +L+ +D+  V FR  ++  + EPVVFP+  P +L  G+SGIAVGM
Sbjct: 1   MRYTECRLTRFCEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQGSSGIAVGM 60

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T IP HN+ EI +A +ALI +PE+   +LL  + GPDFPTGG++V S E I  +Y+ GR
Sbjct: 61  STQIPPHNLHEILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNS-EEIPGAYKEGR 119

Query: 248 GGFRVRARWC------------------------------VEEVGRGSWCIVVTEIPYQV 277
           G   +R R+                               V    +    +V+TE+PY V
Sbjct: 120 GRVLLRGRFHLEGEDDDGDTVPGRDRNAEDEAERDEADRNVRNGRKNERRLVITELPYGV 179

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            KS +++ IA++I  K +  +  +RDES      V+    R  D   ++  +   ++++ 
Sbjct: 180 NKSTVMQVIAQMISVKFLEGVTSVRDESDWRGIRVVLVLRRDADAHTILTLLLKHTNLQV 239

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
             P+++  L  G  P    L  +L  W+A R   L R  +        R  +L+GLL A 
Sbjct: 240 YIPMHLIALEKGTKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHLLEGLLRAV 299

Query: 398 LNIDEIIAIIRNEDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             +D+++  +R                   +  Q  A+L L L  L +LE  Q++ E   
Sbjct: 300 SLMDDVVKTVRESLSADEAKQKLTEPPLGFSPAQAQALLRLTLSRLTRLERRQLEEEAKA 359

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
                 ++ SLL   ++ +  +  E++  K          
Sbjct: 360 QKNRLSELASLLAHDREIYELMVEELQAHKTRHKAPRKTK 399



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 28/118 (23%), Gaps = 32/118 (27%)

Query: 661  VAVVGENRKLLIFSIDQIPEMS--RGKGVRLQSYKDGGISDVICFKICE----------- 707
            + +V      L F    +      + +GVR    + G     +     E           
Sbjct: 942  IVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPEVKEDEAKTESR 1001

Query: 708  -------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                                 + +      + +        + +R GVG  V +   R
Sbjct: 1002 KEGDSDETQSKNESSNEKAEPSLLIVTAAGFGKRIRVSALRMQRRRGVGVRVIRLVKR 1059


>gi|259130114|gb|ACV95505.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 58/83 (69%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PHGD S+Y +LVR+AQP+  RYP
Sbjct: 61  PHGDSSIYHTLVRMAQPWSLRYP 83


>gi|290343684|ref|YP_003495051.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
 gi|260161099|emb|CAY39800.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
          Length = 1072

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 77/392 (19%), Positives = 140/392 (35%), Gaps = 52/392 (13%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
                +   +VK +S+   + +  + ++L+ +K R+I  + DG KP  R++++A     L
Sbjct: 630 PKELEVPYGSVKNLSITHFVRKDLVNFSLADLK-RSIAHMADGLKPSQRKVMYACFHKNL 688

Query: 67  DFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                  K A++   V  K   H HG+ S+ D++V+LA  +       L+   G FG   
Sbjct: 689 KDE---MKVAQLAAYVADKSAYH-HGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRL 744

Query: 122 -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLA 177
             G  A+  RY   ++T+ A  I    D    D    Y   +    EP  +    P +L 
Sbjct: 745 MGGKDASQTRYIFTKLTKDARKIFDPRD----DPVLNYLDDDGRAIEPDFYMPTLPMVLV 800

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NGT GI  G +  +P  N ++I E               +   + G DF          +
Sbjct: 801 NGTEGIGTGFSCYVPPFNPKDIKE--------------NIQRSLEGHDFKEMKPWFRGFK 846

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
                     G +     W           + VTE+P         E +  L+  K I  
Sbjct: 847 GK---VFKEDGTWITEGVW-----RDTGSRLKVTELPPGRWTQDYKEYLDTLMEKKVISG 898

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVM 355
             +       D  I+ +            + +     M   F  +   L      + +  
Sbjct: 899 FTNNSTTEDVDFEIMGY----------TGKDVLKDLKMRKSFHTSNMHLFHPTKGIYKYS 948

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
             + ILK+++  R +   +R    ++ +  + 
Sbjct: 949 SPEEILKDFVDLRLDHYKKRKEHLIKVLQTKA 980


>gi|163955216|ref|YP_001648320.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
 gi|163638665|gb|ABY28024.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
          Length = 1072

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 77/392 (19%), Positives = 140/392 (35%), Gaps = 52/392 (13%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
                +   +VK +S+   + +  + ++L+ +K R+I  + DG KP  R++++A     L
Sbjct: 630 PKELEVPYGSVKNLSITHFVRKDLVNFSLADLK-RSIAHMADGLKPSQRKVMYACFHKNL 688

Query: 67  DFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                  K A++   V  K   H HG+ S+ D++V+LA  +       L+   G FG   
Sbjct: 689 KDE---MKVAQLAAYVADKSAYH-HGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRL 744

Query: 122 -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSKFPNLLA 177
             G  A+  RY   ++T+ A  I    D    D    Y   +    EP  +    P +L 
Sbjct: 745 MGGKDASQTRYIFTKLTKDARKIFDPRD----DPVLNYLDDDGRAIEPDFYMPTLPMVLV 800

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NGT GI  G +  +P  N ++I E               +   + G DF          +
Sbjct: 801 NGTEGIGTGFSCYVPPFNPKDIKE--------------NIQRSLEGHDFKEMKPWFRGFK 846

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
                     G +     W           + VTE+P         E +  L+  K I  
Sbjct: 847 GK---VFKEDGTWITEGVW-----RDTGSRLKVTELPPGRWTQDYKEYLDTLVEKKVISG 898

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVM 355
             +       D  I+ +            + +     M   F  +   L      + +  
Sbjct: 899 FTNNSTTEDVDFEIMGY----------TGKDVLKDLKMRKSFHTSNMHLFHPTKGIYKYS 948

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
             + ILK+++  R +   +R    ++ +  + 
Sbjct: 949 SPEEILKDFVDLRLDHYKKRKEHLIKVLQTKA 980


>gi|259130132|gb|ACV95514.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 58/83 (69%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PHGD S+Y +LVR+AQP+  RYP
Sbjct: 61  PHGDSSIYYTLVRMAQPWSLRYP 83


>gi|66347012|emb|CAI94714.1| topoisomerase IV ParC [Salmonella enterica subsp. enterica serovar
           Fischerkietz]
 gi|66347014|emb|CAI94715.1| topoisomerase IV ParC [Salmonella enterica subsp. enterica serovar
           Senftenberg]
          Length = 87

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 68/87 (78%), Gaps = 1/87 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 119 GNIDG-DSAAAYRYTEARMTQVAELIL 144
           G  D   S AA RYTE+R+++ AEL+L
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYAELLL 87


>gi|27542597|gb|AAO16899.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 82

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 48/82 (58%), Positives = 66/82 (80%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 128 AYRYTEARMTQVAELILQGVDE 149
           A RYTE R+ ++A  ++  +++
Sbjct: 61  AMRYTEIRLAKIAHELMADLEK 82


>gi|328871183|gb|EGG19554.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1574

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 118/278 (42%), Gaps = 32/278 (11%)

Query: 18   KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            K + +   + +  + ++++   ER+IP + DG K   R+I+++  +  L       + A+
Sbjct: 791  KKIKISEFINKELILFSIAD-CERSIPSIVDGLKISQRKILYSCFKRNL---KKELRVAQ 846

Query: 78   IVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRY 131
            ++G V      H HG+ S+  +++ +AQ +        +   G+FG+    G  ++  RY
Sbjct: 847  LIGYVSEHSAYH-HGEASLASTIINMAQDYVGSNNINTLYPSGSFGSRLQGGKDSSQPRY 905

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
                +  +   +    D++ + +    + +  +P  +    P +L NG+SGI  G ++SI
Sbjct: 906  IHTCLRDITRTLFHQDDDNLLTYV-NDDGKKVQPKWYMPTIPFVLVNGSSGIGTGYSSSI 964

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P++N +++ +    L+D  E++  K       P +      +E +             + 
Sbjct: 965  PNYNPRDLIQCMRDLLDEKEMTDIK-------PWYRGFRGSIEPKS---------HQTYL 1008

Query: 252  VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL 289
             +  W         + + VTE+P         E +  L
Sbjct: 1009 CKGAWK----KLSEYELEVTELPIGTWTQSFKELLELL 1042


>gi|311992744|ref|YP_004009612.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Ac42]
 gi|298684527|gb|ADI96488.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Ac42]
          Length = 442

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 178/456 (39%), Gaps = 30/456 (6%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   +      YA+ T+++RAIP++ DG KPVHR +++   ++         K A + G 
Sbjct: 7   LTEVINNEAKEYAIYTVEQRAIPNMIDGMKPVHRFMLYRAMQLAKGDKEKMHKLASVAGG 66

Query: 82  VI-GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           V     H HG+ S  D+   +A  +   +P + G+GNFG+     AAA RY   R+++  
Sbjct: 67  VADAGYH-HGEGSAQDAGALMANTWSNNFPFLDGEGNFGSRLVQQAAASRYIFCRISENF 125

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             + +  +   V      + E   P  +    P +L NG  GIA G AT+I  H+++ + 
Sbjct: 126 SKVFKDENVAPVH----EDPEHKPPRFYLPVIPVVLLNGVEGIATGYATNILPHSIKSVI 181

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           E     ++      E  +EY   P F         +               +   + +  
Sbjct: 182 ECTRQALNGVVDIKEPSVEY---PKFSGKIYRDGPK-------------CELHGTYKIT- 224

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  + +TEIPY   +++ +EK+ + +  K      D   ++    +I +  +    
Sbjct: 225 ---SKTQMEITEIPYSFDRAKYVEKVLDPLEDKGFISYSDNCGKNGFGFKIKMRKEAGLE 281

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ-VMPLDGILKEWLAHRREVLFRRSSFR 379
             +   + I  +  +  R   N+ V+      +       ++K ++  R E + +R   +
Sbjct: 282 LTEENHDKIMKMFGLIERLSQNITVIDENGKLRVFESAVELIKHFVEVRTEYVKKRIHAK 341

Query: 380 MQAIDRRVE--ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
           +   D + +    K   I  +   +I+   +   +    + +  +L +   + ++ L + 
Sbjct: 342 IIETDSKAKILTAKARFINAVIKGDIVIAGKTRKQLVEELKAIDNLAQY-AEELVLLNIY 400

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
            +   E  ++       + + +         + Q +
Sbjct: 401 HITSDEARKLALAAKAAIEDNQYWRETTAEVEYQKD 436


>gi|71666676|ref|XP_820295.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
            Brener]
 gi|70885633|gb|EAN98444.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 159/433 (36%), Gaps = 43/433 (9%)

Query: 41   RAIPDLRDGFKPVHRRIIHA-MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDS 97
            RA+    DG KP  R+I+ A M   G +      K A++ G +      H HG+ S+ ++
Sbjct: 679  RALAHAVDGLKPSQRKILWAIMRRSGNESA----KVAQMSGYISEVSAFH-HGEMSLQET 733

Query: 98   LVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            ++++AQ F       L+  +G FG+    G+  AA RY   +++ +A ++    DE  +D
Sbjct: 734  IIKMAQNFTGGNNINLLIPEGQFGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLD 793

Query: 154  FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--E 211
            +  T   +  EP  +    P LL NG+ GI  G A++IP  +  ++  A  ++I+    +
Sbjct: 794  YV-TEEGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAK 852

Query: 212  ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
            + + +L+ + +G      G +    E   E    G   + V  R  V            T
Sbjct: 853  VVVRRLVPWAVGY----QGEVRRGPEG--EFIAAGSYQYYVDGRVHV------------T 894

Query: 272  EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331
            EIP+ +      + I+ L     +  + D           V      +            
Sbjct: 895  EIPWTLSIEAFRDHISVLASKDVVQRIADY-----SGANHVDIDLELTNGAMTTYAECES 949

Query: 332  LSDMETRFPLNMNVLSMGR--VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
               +  R  +N  V S      P    L  +L+     R ++  +R    +  ++  +  
Sbjct: 950  ELSLTQRIYINGTVFSPTGVLTPLEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAR 1009

Query: 390  LKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
             K  L    +  E    I N       K          ++  D +L   +    K     
Sbjct: 1010 EKSTLKFVTHFREGKIDIVNATDDSLAKTCSKLGMVRVDDSYDYVLRKPITFYTKTSLEN 1069

Query: 447  IKSELDNLLAEKE 459
            +  ++       +
Sbjct: 1070 LNRKIGETEKRID 1082


>gi|309365103|emb|CAP23826.2| hypothetical protein CBG_02746 [Caenorhabditis briggsae AF16]
          Length = 1482

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 87/505 (17%), Positives = 176/505 (34%), Gaps = 47/505 (9%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDS 97
            ER+IP L DGFKP  R+++ A  +          K A++ G V  +   H HG+ S+  +
Sbjct: 745  ERSIPCLVDGFKPGQRKVLFACFK---RADKREVKVAQLAGAVAELSAYH-HGEVSLMGT 800

Query: 98   LVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            ++ LAQ +       ++   G FG     G  +A+ RY   +++ V   +    D++ + 
Sbjct: 801  IINLAQDYVGSNNINVLLPIGQFGTRLQGGKDSASARYIFTQLSPVTRSVFPANDDNVLR 860

Query: 154  FRDTYNEEDSE-PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
            F   Y E     P  +    P +L NG +GI  G +T+IP++N +E+ +    LI     
Sbjct: 861  FL--YEENQRIEPEWYCPIIPMVLVNGAAGIGTGWSTNIPNYNPRELVKNVKKLIAGEAQ 918

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
                                   +    +  ++    +       V +       + +TE
Sbjct: 919  KALDPWY----------------KNFRGKIIQIDPSRYACYGEVAVLDDNT----VEITE 958

Query: 273  IPYQVQKSRLIEKI---AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME-S 328
            +P +       EK+         K+ P++ D ++   +     +   +     +L     
Sbjct: 959  LPIKTWTQEYKEKVLESLMESTDKKTPIVSDYKEYHTDTTVKFVVKLSPGKLAELERSGD 1018

Query: 329  IFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGILKEWLAHRRE--VLFRRSSFRMQAID 384
            +  +  ++        VL    G +      + I +E+   R+E  +  +     +    
Sbjct: 1019 LHTVFKLQQVINTTCMVLFDAAGCLRTYTTPEEITQEFFDVRKEKYIQRKEYMVGVLQAQ 1078

Query: 385  RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK--- 441
             +    +   I     +EII   + +      ++      +         +L+ LR+   
Sbjct: 1079 SKRLTNQARFILAKINNEIIMENKKKASIVETLIKMKFDPDPVKKWKEEQKLKELRESGE 1138

Query: 442  ---LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
                EE Q+  E D           +L +    ++ +            K+  +      
Sbjct: 1139 VELDEEDQVDEEGDGEGTSASFTTKVLETRLSDYDYLVGMALIKLSEEEKNKLIKESEDK 1198

Query: 499  FCEVSRADKATLQQAMIEKEPITVV 523
              E+   +K T Q    E     +V
Sbjct: 1199 LAEMKELEKKTWQDLWHEDLDNFLV 1223


>gi|45550206|gb|AAS67881.1| ParC [Salmonella enterica subsp. enterica serovar Reading]
 gi|324331535|gb|ADY38650.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi B]
 gi|324331539|gb|ADY38652.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 87

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 68/87 (78%), Gaps = 1/87 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+
Sbjct: 1   YAMSELGLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 119 GNIDG-DSAAAYRYTEARMTQVAELIL 144
           G  D   S AA RYTE+R+++ AEL+L
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYAELLL 87


>gi|45191011|ref|NP_985265.1| AER410Wp [Ashbya gossypii ATCC 10895]
 gi|44984079|gb|AAS53089.1| AER410Wp [Ashbya gossypii ATCC 10895]
          Length = 1427

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 74/403 (18%), Positives = 152/403 (37%), Gaps = 36/403 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++ ++  + +   + +  + ++L+    R+IP L DG KP  R++I    +  + 
Sbjct: 665  EPGTVLDPHLTEIQIGDFINKELILFSLADNL-RSIPHLLDGLKPSQRKVIFGSFKRNIM 723

Query: 68   FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                  K   +   V G+   H H +QS+  ++V LAQ F       L+  +G FG    
Sbjct: 724  --KTEIKVQELAAYVSGQTAYH-HTEQSLVQTIVSLAQDFVGANNIYLLMPRGAFGTRAT 780

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY   ++  +++ +   +D   + +    +E+  EP  +    P +L NG  
Sbjct: 781  GGKDAAAARYIFTQLNSISKHVFNPLDNPLLTYVQD-DEKTVEPEWYVPALPMVLVNGAE 839

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP  N  +I      L+   E                              
Sbjct: 840  GIGTGWSTSIPPFNPIDIVNNLRKLMRGDEPDDM--------------APWFRGWNG--T 883

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL--IIAKRIPLLE 299
              ++    +R+  R        G   + +TE+P +   + + E +        +  P ++
Sbjct: 884  MQKIDAQRYRIFGRIE----QVGENTVEITELPARTWTTTIKEHLLLALSGNERTKPWVK 939

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPL 357
            D++ E        +                +    + +   L+  VL  +  ++ +   +
Sbjct: 940  DMQ-EQHGATIKFVVTLTPEEMERTRKIGFYERFKLISTVSLSNMVLFDAHNKIKKYNDV 998

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
              IL ++   R E   +R  + ++ +  ++E L   +     I
Sbjct: 999  KEILTDFFYVRLEFYQKRKDYMIERLQWQLEKLSFQVKFIKMI 1041


>gi|94471628|gb|ABF21080.1| DNA gyrase subunit A [Acholeplasma multilocale]
          Length = 345

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 119/332 (35%), Gaps = 24/332 (7%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE  +I  E++ + +  + +  L++  ++Q   +  ++ ++   +       R
Sbjct: 1   RLQRLVGLEREKIAEEMNQIQSRIDYLTQLISDKEEQNRVLKEQLSDIALKYGDD----R 56

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-------HFKE 547
           R  T  E   +      + +I      +++S  G+IR +      +          +   
Sbjct: 57  RTETINE---SVMNIQDEELIPDVKTMILLSEEGYIRRVDPEEFRIQKRGGRGISVNSSN 113

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN---HNQDIVT 604
            D + IA      D +L  +  GK +   A N+         + ++  LN       I  
Sbjct: 114 DDPISIATMGKMRDWVLFFTNSGKVFRTKAYNIRQYSRTSRGLPIVNFLNGLTPEDKITA 173

Query: 605 AFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                +       L  V+  G     + S   +  + GK  + +  ++++  V+  TG+ 
Sbjct: 174 ILPMRNEKEKFKYLTFVTEAGMIKRTDISLFDSINQNGKIAITLKDDDQLVTVMPTTGED 233

Query: 661 -VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +  ++ K++  + D +  +SR   GV+     +  I  V              + + 
Sbjct: 234 TVFIANKSGKVIRINEDIVRPLSRTATGVKGIKLDEDDIV-VGAVTSYGIEAITTISSKG 292

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             +        +  R G G  V     ++G F
Sbjct: 293 NFKKTALDEYRISGRNGKGIKVMNLNEKTGDF 324


>gi|268531746|ref|XP_002631000.1| Hypothetical protein CBG02746 [Caenorhabditis briggsae]
          Length = 1506

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 87/505 (17%), Positives = 176/505 (34%), Gaps = 47/505 (9%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDS 97
            ER+IP L DGFKP  R+++ A  +          K A++ G V  +   H HG+ S+  +
Sbjct: 745  ERSIPCLVDGFKPGQRKVLFACFK---RADKREVKVAQLAGAVAELSAYH-HGEVSLMGT 800

Query: 98   LVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            ++ LAQ +       ++   G FG     G  +A+ RY   +++ V   +    D++ + 
Sbjct: 801  IINLAQDYVGSNNINVLLPIGQFGTRLQGGKDSASARYIFTQLSPVTRSVFPANDDNVLR 860

Query: 154  FRDTYNEEDSE-PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
            F   Y E     P  +    P +L NG +GI  G +T+IP++N +E+ +    LI     
Sbjct: 861  FL--YEENQRIEPEWYCPIIPMVLVNGAAGIGTGWSTNIPNYNPRELVKNVKKLIAGEAQ 918

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
                                   +    +  ++    +       V +       + +TE
Sbjct: 919  KALDPWY----------------KNFRGKIIQIDPSRYACYGEVAVLDDNT----VEITE 958

Query: 273  IPYQVQKSRLIEKI---AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME-S 328
            +P +       EK+         K+ P++ D ++   +     +   +     +L     
Sbjct: 959  LPIKTWTQEYKEKVLESLMESTDKKTPIVSDYKEYHTDTTVKFVVKLSPGKLAELERSGD 1018

Query: 329  IFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGILKEWLAHRRE--VLFRRSSFRMQAID 384
            +  +  ++        VL    G +      + I +E+   R+E  +  +     +    
Sbjct: 1019 LHTVFKLQQVINTTCMVLFDAAGCLRTYTTPEEITQEFFDVRKEKYIQRKEYMVGVLQAQ 1078

Query: 385  RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK--- 441
             +    +   I     +EII   + +      ++      +         +L+ LR+   
Sbjct: 1079 SKRLTNQARFILAKINNEIIMENKKKASIVETLIKMKFDPDPVKKWKEEQKLKELRESGE 1138

Query: 442  ---LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
                EE Q+  E D           +L +    ++ +            K+  +      
Sbjct: 1139 VELDEEDQVDEEGDGEGTSASFTTKVLETRLSDYDYLVGMALIKLSEEEKNKLIKESEDK 1198

Query: 499  FCEVSRADKATLQQAMIEKEPITVV 523
              E+   +K T Q    E     +V
Sbjct: 1199 LAEMKELEKKTWQDLWHEDLDNFLV 1223


>gi|27542581|gb|AAO16891.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 68/84 (80%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 1   NDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDE 149
           AAA RYTE R+ ++A  ++  +++
Sbjct: 61  AAAMRYTEIRLAKIAHELMADLEK 84


>gi|313844192|ref|YP_004061855.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus OlV1]
 gi|312599577|gb|ADQ91599.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus OlV1]
          Length = 1074

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 84/472 (17%), Positives = 170/472 (36%), Gaps = 46/472 (9%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
                 +   NV+ +S+   + +  + ++L+ +K R+I  + DG KP  R++++A     L
Sbjct: 630  PKELEVPYGNVRNLSISNFVHKDLVNFSLADLK-RSIAHMADGLKPSQRKVMYACFHKNL 688

Query: 67   DFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                   K A++   V  K   H HG+ S+ D++V+LA  +       L+   G FG   
Sbjct: 689  KDE---MKVAQLAAFVAEKSAYH-HGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRL 744

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G  A+  RY   ++T+ A  I    D+  +++ D  +    EP  +    P +L NGT
Sbjct: 745  MGGKDASQTRYIFTKLTKDARKIFDPRDDPILNYLDD-DGRPIEPDFYMPTLPMVLVNGT 803

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +  +P  N ++I +               + + + G  F       +  +   
Sbjct: 804  EGIGTGFSCYVPPFNPKDIKD--------------NIQKALEGHGFTQMRPWFKGFKG-K 848

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
                   G +     W           + +TE+P         E +  L+  K I    +
Sbjct: 849  IFKEDESGSWIAEGIWH-----DTGSRLKITELPPGRWTQDYKEYLDTLVEKKVITNFTN 903

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
                   D  IV +            + +     +   F  +   L      + +    +
Sbjct: 904  NSTTDDVDFEIVGY----------SGKDLVKDLKLRKSFHTSNMHLFHPTKGIYKYNSPE 953

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPV 416
             ILK+++  R +   +R    ++ +  +  +   K   +  +   +I+   R  D  +  
Sbjct: 954  EILKDFVDLRLDHYKKRREHLIKVLQTKATMCGYKSKFVTMVIEGDIVVFKRKRDDLERQ 1013

Query: 417  MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
            +   F       D +LN++     +    ++  E      E E +    +  
Sbjct: 1014 LSQLFPKIGGTYDYLLNIKTVQYTEESVRELLKEAKQARDELEIMKKTSHID 1065


>gi|259130116|gb|ACV95506.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 58/83 (69%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PH D S+YD+LVR+AQP+  RYP
Sbjct: 61  PHCDSSIYDTLVRMAQPWSLRYP 83


>gi|1212749|emb|CAA65085.1| Topoisomerase IV [Acinetobacter baumannii]
          Length = 92

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 65/92 (70%), Gaps = 1/92 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDA 151
            D   S AA RYTEA+++  +EL+L  + +  
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLLSELGQGT 92


>gi|314055306|ref|YP_004063644.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
 gi|313575197|emb|CBI70210.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
          Length = 1072

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 90/472 (19%), Positives = 172/472 (36%), Gaps = 48/472 (10%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
                 +   +VK +S+   + +  + ++L+ +K R+I  + DG KP  R++++A     L
Sbjct: 630  PKELEVPYGSVKNLSITHFVRKDLVNFSLADLK-RSIAHMADGLKPSQRKVMYACFHKNL 688

Query: 67   DFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                   K A++   V  K   H HG+ S+ D++V+LA  +       L+   G FG   
Sbjct: 689  KDE---MKVAQLAAYVADKSAYH-HGEVSLADTIVKLANDYTGSNNINLLEPCGQFGTRL 744

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G  A+  RY   ++T+ A  I    D+  +++ D  +    EP  +    P +L NGT
Sbjct: 745  MGGKDASQTRYIFTKLTKEARKIFDPRDDPILNYLDD-DGRSIEPDFYMPTIPMVLVNGT 803

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +  +P  N ++I E               +   + G  F          +  +
Sbjct: 804  EGIGTGFSCYVPPFNPKDIKE--------------NIQRALEGHSFKDMSPWFRGFKGKI 849

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
                   G +     W           + VTE+P         E +  LI  K I    +
Sbjct: 850  ---FKEDGTWITEGVW-----RDTGSRLKVTELPPGRWTQDYKEYLDILIEKKVISGFTN 901

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
                   D  I+ +            + I     +   F  +   L      + +    +
Sbjct: 902  NSTTEDVDFEIMGY----------TGKDILKDLKLRKSFHTSNMHLFHPVKGIYKYSSPE 951

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPV 416
             ILK+++  R E   RR    ++ ++ R ++   K   +  +   +I+   R +D  +  
Sbjct: 952  EILKDFVDLRLEHYKRRREHLIKVLEVRSKMCGYKSKFVTMVIEGQIVVFKRKKDDLERQ 1011

Query: 417  MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
            +   F       D +LN++     +    ++  E      E E +    +  
Sbjct: 1012 LAGIFPKINGTYDYLLNIKTVQYTEECVRELLKESKQAREELEVMKGTSHID 1063


>gi|313192266|emb|CBY05941.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 101

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 46/79 (58%), Positives = 62/79 (78%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A 
Sbjct: 20  VIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 79

Query: 142 LILQGVDEDAVDFRDTYNE 160
            ++  ++++ VDF D Y+ 
Sbjct: 80  ELMADLEKETVDFVDNYDG 98


>gi|325519491|gb|EGC98872.1| DNA topoisomerase IV subunit A [Burkholderia sp. TJI49]
          Length = 108

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/89 (59%), Positives = 67/89 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G+V+GK HPHGDQS YD+LVRLAQ F  R
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLR 108


>gi|255519785|ref|ZP_05387022.1| DNA gyrase subunit A [Listeria monocytogenes FSL J1-175]
          Length = 288

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 66/199 (33%), Gaps = 8/199 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
           D +L  +  GK Y      +       +   I  L+ +   + +        +     L 
Sbjct: 1   DTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFTDDSYLF 60

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
             +  G       S+     + G   +++   +++  V    G  ++ +  ++ + + F 
Sbjct: 61  FTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFP 120

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + I  M R   GVR    ++     +    + +    +    + Y +        L  R
Sbjct: 121 EENIRVMGRTAAGVRGIRLREDDEV-IGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNR 179

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           GG+G        ++G  ++
Sbjct: 180 GGMGVKTVTITEKNGNLVA 198



 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K     L A+  +E D L        +  +++ +  G++   P  N+        A    
Sbjct: 78  KIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTA-AGVRG 136

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           I L  + +++   V +   K+LVV+ KG       S+     R G   KT         +
Sbjct: 137 IRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNL 196

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  VTG+  + ++  +  L+ F ID + +  R   GV+L    +      + 
Sbjct: 197 VAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 250


>gi|69250184|ref|ZP_00605120.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium DO]
 gi|68193992|gb|EAN08552.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium DO]
          Length = 193

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 132/195 (67%), Gaps = 7/195 (3%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 1   MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 60

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG
Sbjct: 61  TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 120

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +
Sbjct: 121 SVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 175

Query: 309 V--RIVLFPKNRSLD 321
              R+V+ P++  +D
Sbjct: 176 NPTRLVIVPRSNRVD 190


>gi|261599209|gb|ACX85667.1| ParC [Streptococcus pneumoniae]
          Length = 106

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 69/105 (65%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            +    F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++
Sbjct: 2   HDTKHTFDKSYRKSAKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSM 61

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           DGD  AA RYTEAR++++A  +LQ +++  V F   +++ + EP 
Sbjct: 62  DGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPT 106


>gi|630594|pir||S44861 DNA topoisomerase II - Caenorhabditis elegans
          Length = 2434

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 157/440 (35%), Gaps = 26/440 (5%)

Query: 42   AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLV 99
            +IP L DG KP  R+I+  +  +     +   K +++ G V  +   H HG++S+  +++
Sbjct: 1971 SIPSLIDGLKPSQRKILWTL--LNNMDESTEIKVSQLAGAVAHRQSYH-HGEESLVRTII 2027

Query: 100  RLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            R+ Q F      PL+   G FG     G+ AA+ RY    +     L+    D+D +  +
Sbjct: 2028 RMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASARYIFTALAPTTRLLFPQADDDLL--Q 2085

Query: 156  DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
                E            P +L NGT GI  G +T I + N  +I +    +    +    
Sbjct: 2086 KNVEEGMVVEPTLCPIVPLILINGTEGIGTGWSTKIANRNPIDIID---MIRRKIDSIST 2142

Query: 216  KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
            +        +F     +V   + I           R  A           + I + E+P 
Sbjct: 2143 EYEIPPFYEEFRGKLEVVTPTKFISSGKIQLIRPERKNAST---------FSIEIVELPI 2193

Query: 276  QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
             +  S+  EK+++++    +    +   E     RI L  K  S         +     +
Sbjct: 2194 GIWTSKYKEKLSKIVETLPVLEFSERHTEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKL 2253

Query: 336  ETRFPLNMNVLSMGRVPQVM-PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
             T    N  +       +    +  I  E+   RR++  +R   + +  + ++  ++  L
Sbjct: 2254 RTSLTENRVLFDRNGELKEFGNISEIAAEFFEVRRDLYEKRLKIQKEECEAKLIYVENQL 2313

Query: 395  IAYLNIDE--IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                 +    I       ++ +  +       +       N +  +L   E++Q  +   
Sbjct: 2314 NFIEMVTNGTIEIRSMGRNQLEEKLQEMGFRVDPMATIAKNSKKVNLINYEDFQYLNFQA 2373

Query: 453  NLLAEKEKIDSLLNSGKQQW 472
            N     E   S L S + + 
Sbjct: 2374 NYGYLLEMPVSRLTSDEMKR 2393


>gi|284027754|gb|ADB66702.1| ParC [Salmonella enterica subsp. enterica]
          Length = 100

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/95 (53%), Positives = 68/95 (71%), Gaps = 1/95 (1%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           + DG KPV RR+++AMSE+GL     FK+SAR VG+V+GK HPHGD + Y+++V LAQPF
Sbjct: 6   IGDGLKPVQRRMVYAMSELGLTATFKFKRSARTVGDVLGKYHPHGDSAWYEAMVLLAQPF 65

Query: 106 VQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
             R PL+ GQG +G +D   S AA RYTE R++  
Sbjct: 66  SYRGPLVDGQGFWGALDDPKSFAAMRYTEYRLSNF 100


>gi|27542589|gb|AAO16895.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 83

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 68/83 (81%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDE 149
           AA RYTE R+ ++A  ++  +++
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEK 83


>gi|60651668|gb|AAX32845.1| GyrA [Riemerella anatipestifer]
          Length = 80

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 63/80 (78%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR+++ M  +G+     + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + G
Sbjct: 1   RRVLYGMYGLGVFSNKKYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEA 134
           QGNFG++DGD  AA RYTEA
Sbjct: 61  QGNFGSMDGDPPAAMRYTEA 80


>gi|221124382|ref|XP_002163411.1| PREDICTED: similar to phosphoserine aminotransferase [Hydra
           magnipapillata]
          Length = 495

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 2/135 (1%)

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G        E     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 2   GTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFSDGGKAVRFDENDVR 61

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR     +G     +     E  + + +    Y +  N        RG  G 
Sbjct: 62  PMGRNARGVRGMMLDEGQSVIAMLVAEDEQQSVLTATENGYGKRTNITEYTRHGRGTKGM 121

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+GK +++
Sbjct: 122 IAIQQSERNGKVVAA 136



 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 6/151 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 3   TVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFSDGGKAVRFDENDVRP 62

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEIIANTRKGKTF 641
              +   ++ ++ L+  Q ++   V +   + +L  +  G       +E   + R  K  
Sbjct: 63  MGRNARGVRGMM-LDEGQSVIAMLVAEDEQQSVLTATENGYGKRTNITEYTRHGRGTKGM 121

Query: 642 LKVSSEEKMKLVVKVT----GDHVAVVGENR 668
           + +   E+   VV  T     D + ++ +  
Sbjct: 122 IAIQQSERNGKVVAATLVHAEDEIMLITDKG 152


>gi|27542601|gb|AAO16901.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 67/84 (79%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 1   NDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDE 149
           AAA RYTE R+ ++A  ++  +++
Sbjct: 61  AAAMRYTEIRLAKIAHELMADLEK 84


>gi|27542591|gb|AAO16896.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 82

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 49/82 (59%), Positives = 67/82 (81%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 128 AYRYTEARMTQVAELILQGVDE 149
           A RYTE R+ ++A  ++  +++
Sbjct: 61  AMRYTEIRLAKIAHELMADLEK 82


>gi|324331537|gb|ADY38651.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 87

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 68/87 (78%), Gaps = 1/87 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDNACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 119 GNIDG-DSAAAYRYTEARMTQVAELIL 144
           G  D   S AA RYTE+R+++ AEL+L
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYAELLL 87


>gi|218516786|ref|ZP_03513626.1| DNA topoisomerase IV subunit A [Rhizobium etli 8C-3]
          Length = 167

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 96/167 (57%), Positives = 132/167 (79%)

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           HGE +++++D++++Q ++TAFV+D   K L+VS+ GN F+V E+E+IANTRKGK  + V+
Sbjct: 1   HGEPLRIMVDMDNDQAVLTAFVHDPARKQLIVSTAGNGFVVAEAELIANTRKGKQIMNVA 60

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI 705
             E+ +L+V V+GDHVAVVGENRKLL+F + Q+PEM+RGKGVRLQ YKDGGISDV CF +
Sbjct: 61  LPEETQLLVPVSGDHVAVVGENRKLLVFPLAQVPEMTRGKGVRLQRYKDGGISDVRCFAM 120

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +GL W DSAGR++ +++++L  WLG R   G  VPKGFPRSGKF  
Sbjct: 121 SDGLVWEDSAGRTFTKNKDELAEWLGDRASAGRTVPKGFPRSGKFAG 167


>gi|146306|gb|AAA23948.1| gyrase A [Escherichia coli]
          Length = 88

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 63/82 (76%)

Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKS
Sbjct: 7  EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 76 ARIVGEVIGKLHPHGDQSVYDS 97
          AR+VG+VIGK HPHGD +VYD+
Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDT 88


>gi|27542587|gb|AAO16894.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/84 (60%), Positives = 68/84 (80%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQ 145
           DGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMA 84


>gi|135998|sp|P12531|TOP2_TRYBB RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|162305|gb|AAA30256.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 86/426 (20%), Positives = 158/426 (37%), Gaps = 46/426 (10%)

Query: 3    VDNISNSNTLVEENVKAVS-----LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
             D ++ +N    E     S     +   + +  + +AL     RA+    DG KP  R+I
Sbjct: 637  KDWMTKANAFTGEVDIDRSKKMLTVTDFVHKEMVHFAL-VGNARALAHSVDGLKPSQRKI 695

Query: 58   IHA-MSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPFV--QRYPLI 112
            I A M   G +      K A++ G +      H HG+ S+ ++++++AQ F       L+
Sbjct: 696  IWALMRRSGNEAA----KVAQLSGYISEASAFH-HGETSLQETMIKMAQSFTGGNNVNLL 750

Query: 113  SGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
              +G FG+    G+  AA RY   ++++VA L+    D+  +D+      +  EP  +  
Sbjct: 751  VPEGQFGSRQQLGNDHAAPRYIFTKLSKVARLLFPSEDDPLLDYI-VEEGQQVEPNHYVP 809

Query: 171  KFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP--EISIEKLLEYIIGPDFPT 228
              P LL NG+ GI  G +++IP  +  ++  A  A+I     +  + +L+ + +G     
Sbjct: 810  ILPLLLCNGSVGIGFGFSSNIPPFHRLDVSAAVRAMISGERAKSVVRRLVPWAVGF---- 865

Query: 229  GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
             G I    E   E   +G   +    R  V            TE+P+        E I+ 
Sbjct: 866  QGEIRRGPEG--EFIAVGTYTYCKGGRVHV------------TELPWTCSVEAFREHISY 911

Query: 289  LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
            L     +  + D           V      +               +  R  +N  V S 
Sbjct: 912  LATKDIVNRIADY-----SGANHVDIDVEVAQGAVNTYAECESELGLTQRIHINGTVFSP 966

Query: 349  GRV--PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
                 P    L  +L+     R ++  +R    +  +++ +   K  L    +       
Sbjct: 967  NGTLSPLESDLTPVLQWHYDRRLDLYKKRRQRNLTLLEQELAREKSTLKFVQHFGAGHID 1026

Query: 407  IRNEDK 412
              N  +
Sbjct: 1027 FANATE 1032


>gi|168997715|gb|ACA42555.1| topoisomerase IV [Escherichia coli]
          Length = 88

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 50/88 (56%), Positives = 68/88 (77%), Gaps = 1/88 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 119 GNIDG-DSAAAYRYTEARMTQVAELILQ 145
           G  D   S AA RYTE+R+++ +EL+L 
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYSELLLS 88


>gi|324507090|gb|ADY43013.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 625

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 85/517 (16%), Positives = 174/517 (33%), Gaps = 53/517 (10%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            N+++   EN+   +    + E  + ++   I+ R++P+  DG KP  R++++ + +   
Sbjct: 134 ENTDSRKRENLNQRTYSEFINEELIDFSRLDIR-RSVPNAIDGLKPSQRKVLYTLMQ--- 189

Query: 67  DFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN-- 120
            F  +  +  ++ G V      H HG++ + +++VRLAQ F       L+   G FG   
Sbjct: 190 RFEKSEVRVVQLAGAVAHSCAYH-HGEEPLINTIVRLAQDFVGSNNLNLLQPIGQFGTRL 248

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           I G+  A+ RY    ++ +   I    D+  + + +  +    EP  F    P +L NG 
Sbjct: 249 IGGEDCASARYIYTALSPLVRWIFPRADDSVLSYIE-EDNMRIEPQWFCPIIPMVLVNGA 307

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GI  G AT +  +N              P+  I  +   I G           +    +
Sbjct: 308 EGIGTGWATKVLCYN--------------PKQVIRNVQRMIDGQPLQKMVPFYRNFTGTI 353

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI-AELIIAKRIPLLE 299
           +    GR                      +TE+P  V   R  EK+   L  +  I   +
Sbjct: 354 KEASEGRFHISGTVTLRPSRKNAHFIQAEITELPVGVWTQRYKEKVLDVLAKSGIISGYK 413

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMES--IFMLSDMETRFPLNMNVLSMGRV--PQVM 355
           ++  E+A    + L   +             +     ++T    +  VL        +  
Sbjct: 414 ELHTENAVRFLLELPKGSGIWSSANGGRKHALHKTLKLDTVLGTSSMVLFDENNSLRRFT 473

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII----------- 404
            ++ I + +   RR+    R   ++  +D ++   +        +               
Sbjct: 474 RIEEIFELFFEVRRQKYIERRDHQIGVLDAKLRFYENQCRFVEAVLNKEITIEGKSRTDI 533

Query: 405 ------AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                           P       L +++   +L++ +  L   E   +    D  + E 
Sbjct: 534 ESTLRQRHFEPNPLKAPNHEDGNELNKSEFSYLLDMPIIRLSNEEVKSLIESRDAKVTEM 593

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
             +       K   +    ++R +     K      R
Sbjct: 594 NMLKG-----KDWKDMWHEDLRNLTVQLEKDEKKRER 625


>gi|197725599|gb|ACH73008.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 92

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 65/92 (70%), Gaps = 1/92 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDA 151
            D   S AA RYTEA+++  +EL+L  + +  
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLLSELGQGT 92


>gi|261599207|gb|ACX85666.1| ParC [Streptococcus pneumoniae]
          Length = 101

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 66/97 (68%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RY
Sbjct: 3   YRKSAKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRY 62

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           TEAR++++A  +LQ +++  V F   +++ + EP   
Sbjct: 63  TEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTAC 99


>gi|183987568|gb|ACC65774.1| topoisomerase II [Sarcomyxa serotina]
          Length = 696

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 12/186 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++  ++ +     + +  + ++++    R+IP + DG KP  R +I A  +  L 
Sbjct: 517 KPGTCLDHRLEEIPYSEFINKELILFSMADNI-RSIPSVADGLKPGQREVIWACFKRKL- 574

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                 K A++VG V      H HG+ S+  ++V LAQ F       L+S  G +G  D 
Sbjct: 575 --KKEIKVAQLVGYVSEHAAYH-HGEASLAATIVSLAQDFVGSNNVNLLSPNGQYGTRDQ 631

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   AA RY    +  +   +    D+  +  +   +    EP  +    P +L NG  
Sbjct: 632 GGKDHAAPRYIFTDLPPLTRALYHPSDDPLLAVQKD-DNLVIEPEYYVPVIPLVLVNGAE 690

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 691 GIGTGW 696


>gi|34604736|gb|AAQ79819.1| GyrA [Escherichia coli]
          Length = 79

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 52/79 (65%), Positives = 67/79 (84%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAA 127
           Y L+ GQGNFG+IDGDSAA
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|295315177|gb|ADF97676.1| gyrase subunit A [Campylobacter coli]
          Length = 77

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 65/77 (84%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFG 119
           Q F  RYP I GQGNFG
Sbjct: 61  QDFSMRYPSIDGQGNFG 77


>gi|312183507|gb|ADQ42323.1| topoisomerase IV subunit A [Actinobaculum schaalii]
          Length = 93

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 50/94 (53%), Positives = 68/94 (72%), Gaps = 1/94 (1%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI+  M +MGL    A  KS+R+VG+V+G+LHPHGD ++YD++VRLAQPF  R PL+ G
Sbjct: 1   RRILFQMGQMGLRPDRAHVKSSRVVGDVMGRLHPHGDTAIYDAMVRLAQPFTMRLPLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
            GNFG++D D  AA RYTEAR+   A  ++  +D
Sbjct: 61  HGNFGSLD-DGPAASRYTEARLAAPAMAMISSLD 93


>gi|289677158|ref|ZP_06498048.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 356

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 76/253 (30%), Gaps = 47/253 (18%)

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           + D +   L A++   +L+ S+ GK Y L    +        G  +  L+ L+  + I T
Sbjct: 6   DEDYIAHLLVANSHTTLLMFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITT 65

Query: 605 AFVYDSTC------------------------------------------KLLVVSSKGN 622
               D                                              + + ++ G 
Sbjct: 66  MLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGT 125

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
                          G   L++   + +       G+  + +  +  K+  F    +  M
Sbjct: 126 VKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAM 185

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R  +GVR     +G     +     EG   + ++ R Y +          KRGG G + 
Sbjct: 186 GRTARGVRGMRLPEGQKLISMLI-PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIA 244

Query: 741 PKGFPRSGKFLSS 753
                R+G+ + +
Sbjct: 245 MVSNERNGRLVGA 257



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++L  S +
Sbjct: 163 QEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMR-LPEGQKLISMLIPEEGSQILTASER 221

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L+   + 
Sbjct: 222 GYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVG 281

Query: 677 QIPEMSR-GKGVRLQSYKDGG 696
           ++  + R  +GV L       
Sbjct: 282 EVSSLGRNTQGVTLIKLASDE 302


>gi|183987576|gb|ACC65778.1| topoisomerase II [Pleurotus columbinus]
          Length = 692

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  L 
Sbjct: 513 KPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL- 570

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                 K A++VG +      H HG+ S+  ++V LAQ +       L+S  G +G  D 
Sbjct: 571 --KKEIKVAQLVGYISEHAAYH-HGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 627

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  L+    D+  +  R T +    EP  +    P +L NG  
Sbjct: 628 GGKDHASPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYSPIIPMVLVNGAE 686

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 687 GIGTGW 692


>gi|3152672|gb|AAC17114.1| DNA gyrase subunit A [Shigella flexneri]
          Length = 81

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/81 (62%), Positives = 65/81 (80%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+  A+KKSAR VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKAYKKSARAVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQ 145
           SAAA RYTE R+ ++A  ++ 
Sbjct: 61  SAAAMRYTEIRLAKIAHELMA 81


>gi|320089090|emb|CBY98845.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 231

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 3/140 (2%)

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
           + ++ G       +E       G   + ++  +++  V   +G D V +     K++ F 
Sbjct: 1   MATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFK 60

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            D +  M R   GVR            +     EG   +      Y +           R
Sbjct: 61  EDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGA-ILTVTQNGYGKRTAADEYPTKSR 119

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
              G +  K   R+G  + +
Sbjct: 120 ATQGVISIKVTERNGSVVGA 139



 Score = 42.8 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV      +R++   +  +  +     D +   +       IL ++ +G
Sbjct: 45  DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNG 104

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +     + +  +     N  +V A   D   ++++++  G       SE
Sbjct: 105 YGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSE 164

Query: 631 IIANTRK--GKTFLKVSSEEKMKL----VVKVTGDHV 661
           I    R   G   ++ + +E +         V  + +
Sbjct: 165 ISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 201


>gi|218684029|gb|ACL00959.1| DNA gyrase A subunit [Salmonella enterica]
          Length = 82

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/82 (62%), Positives = 66/82 (80%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAEL 142
           IDGDSAAA RYTE R+ ++A  
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHE 82


>gi|183987580|gb|ACC65780.1| topoisomerase II [Pleurotus eryngii var. eryngii]
          Length = 680

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  L 
Sbjct: 501 KPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL- 558

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                 K A++VG +      H HG+ S+  ++V LAQ +       L+S  G +G  D 
Sbjct: 559 --KKEIKVAQLVGYISEHAAYH-HGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 615

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  L+    D+  +  R T +    EP  +    P +L NG  
Sbjct: 616 GGKDHASPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAE 674

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 675 GIGTGW 680


>gi|183987570|gb|ACC65775.1| topoisomerase II [Pleurotus citrinopileatus]
          Length = 709

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  L 
Sbjct: 530 KPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL- 587

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                 K A++VG +      H HG+ S+  ++V LAQ +       L+S  G +G  D 
Sbjct: 588 --KKEIKVAQLVGYISEHAAYH-HGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 644

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  L+    D+  +  R T +    EP  +    P +L NG  
Sbjct: 645 GGKDHASPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAE 703

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 704 GIGTGW 709


>gi|183987572|gb|ACC65776.1| topoisomerase II [Pleurotus eryngii var. ferulae]
          Length = 692

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  L 
Sbjct: 513 KPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL- 570

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                 K A++VG +      H HG+ S+  ++V LAQ +       L+S  G +G  D 
Sbjct: 571 --KKEIKVAQLVGYISEHAAYH-HGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 627

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  L+    D+  +  R T +    EP  +    P +L NG  
Sbjct: 628 GGKDHASPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAE 686

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 687 GIGTGW 692


>gi|183987584|gb|ACC65782.1| topoisomerase II [Pleurotus cornucopiae]
          Length = 692

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  L 
Sbjct: 513 KPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL- 570

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                 K A++VG +      H HG+ S+  ++V LAQ +       L+S  G +G  D 
Sbjct: 571 --KKEIKVAQLVGYISEHAAYH-HGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 627

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  L+    D+  +  R T +    EP  +    P +L NG  
Sbjct: 628 GGKDHASPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAE 686

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 687 GIGTGW 692


>gi|312086869|ref|XP_003145247.1| hypothetical protein LOAG_09672 [Loa loa]
 gi|307759590|gb|EFO18824.1| hypothetical protein LOAG_09672 [Loa loa]
          Length = 655

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/477 (17%), Positives = 172/477 (36%), Gaps = 52/477 (10%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   N    +    + +  L Y+      R++P++ DG+KP  R+++  M      +   
Sbjct: 173 LSSTNCNQKTFSEFVNKELLEYS-QLDLRRSLPNIVDGYKPSQRKVLFTMFG---RYERD 228

Query: 72  FKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
             + +++ G V      H HG++S+ ++++RLAQ F       L+   G FG     G+ 
Sbjct: 229 EVRVSQLAGAVSQYCGYH-HGEESLVNTIIRLAQDFVGSNNLNLLLPLGQFGTRLAGGED 287

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AA+ RY    ++ +A +I    D+  + +         EP  +    P +L NG  GI  
Sbjct: 288 AASARYIYTSLSPLARIIFPRADDKVLKYLM-EENTFIEPEWYCPIIPMILINGAEGIGT 346

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT I     ++I   A  LI                   P   ++   R+       +
Sbjct: 347 GWATKILPRCPRQIISNAQRLI----------------DGRPLQDMLPHFRKFQGTINEI 390

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI------AELIIAKRIPLLE 299
               + +  +     +  G   I+ TE+P  +  ++  EK+      + LI        E
Sbjct: 391 TPRQYSISGKISYHRLRSGLRAII-TELPTGIWNNKYKEKVLDSIMKSGLISYFICSSYE 449

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLD 358
           ++  ES     + +  K    D   +     +L         +M +     V  +     
Sbjct: 450 ELHSESNVHFILHVIDKPLISDKKQIKTLNRLLKLRSVASENSMILFDEKNVLRKYNSTV 509

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL----------------NIDE 402
            I +E+   RR+    R  + ++A+D++++ +   +                     + +
Sbjct: 510 DIFQEFFEVRRQKYVERREYELKAMDKKLKFIGNQVRFVNAVINGEIIIEKKNRVEIVTQ 569

Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           II    + +  K       +        +L++ L  L   E   ++ +   L    +
Sbjct: 570 IIEKGFDSNPMKMKNTVDENRNSPDFAYLLDMPLCRLSNEEILILQEKRSELWERFK 626


>gi|183987588|gb|ACC65784.1| topoisomerase II [Pleurotus cystidiosus]
          Length = 692

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  L 
Sbjct: 513 KPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL- 570

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                 K A++VG +      H HG+ S+  ++V LAQ +       L+S  G +G  D 
Sbjct: 571 --KKEIKVAQLVGYISEHAAYH-HGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 627

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  L+    D+  +  R T +    EP  +    P +L NG  
Sbjct: 628 GGKDHASPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAE 686

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 687 GIGTGW 692


>gi|218684027|gb|ACL00958.1| DNA gyrase A subunit [Salmonella enterica]
          Length = 82

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/82 (62%), Positives = 66/82 (80%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPH D +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHCDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAEL 142
           IDGDSAAA RYTE R+ ++A  
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHE 82


>gi|317158221|ref|XP_001826919.2| DNA topoisomerase 2 [Aspergillus oryzae RIB40]
          Length = 1700

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/507 (15%), Positives = 171/507 (33%), Gaps = 41/507 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +V  +S    + +  + ++++    R+IP + DG KP  R++++      L 
Sbjct: 769  KPGTFLDHSVSKISYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRNLK 827

Query: 68   FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  K   + G V G      HGD S+  ++V LAQ F                 G  
Sbjct: 828  KD---MKVVELAGHVSGMTAYQ-HGDISLQQTIVGLAQSF----------------GGSD 867

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
             A+ RY   R++  A  +    D+  + + +  + E  EP ++    P +L NG  GI  
Sbjct: 868  CASARYIYTRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGADGIGT 926

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEY-IIGPDFPTGGIIVESRESIVESYR 244
            G ++SIP++N ++I +    L+D  E    +       G     GG   +    I E+  
Sbjct: 927  GWSSSIPNYNPEDIVDNLKRLMDGEETRPMQPWFRGFTGEVTDVGGDRFKFSGIIKETGE 986

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
                   +  R   ++       I+  E      K    +         +  L E + ++
Sbjct: 987  KEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDY--KDYNTHTKNMKSALSEGLEEK 1044

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  +             + +   +   ++  +   +      +  Q+  L   L + 
Sbjct: 1045 FKLSKTVATTNLVAFDPEGRITKYATVDDILKEFYTYRLKFYEKRKQYQLSQLQKELDKL 1104

Query: 365  LAHRREVLFRRSSFR-MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
                R V         +    + V + +     Y    ++   ++  ++ + V       
Sbjct: 1105 SNQARFVQEIIDGKLVVSKKKKNVLVQELKDKGYKAFPKVAEAVKAGEEERVVEEDDDES 1164

Query: 424  TEN-------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL------LNSGKQ 470
                        D +L + + SL +    +++ ++     E + +  +            
Sbjct: 1165 DSQDTEVLSSAYDYLLGMAIWSLTQERVEKLRRQIGEKEVEVDALIKMSKEDIWKRDLDD 1224

Query: 471  QWNQIACEIREVKEIFSKSTDLGRRRT 497
               +   ++ +      K   +GRR +
Sbjct: 1225 FIAEWRFQLEDEHRRQRKVAMMGRRTS 1251


>gi|327409604|ref|YP_004347024.1| DNA topoisomerase II [Lausannevirus]
 gi|326784778|gb|AEA06912.1| DNA topoisomerase II [Lausannevirus]
          Length = 1090

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 98/480 (20%), Positives = 171/480 (35%), Gaps = 45/480 (9%)

Query: 19   AVSLRFALEERYLAY--ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             + L   ++E+  +Y  A +    R+IP + DG KP  R++++A     +   +  +K  
Sbjct: 646  DMPLSRFIKEKLSSYHRANN---RRSIPSVYDGLKPSQRKVLYACFASNVIGPSKTEKVE 702

Query: 77   RIVGEV--IGKLHPHGDQSVYDSLVRLAQPFV---QRYPLISGQGNFGN--IDGDSAAAY 129
            R+ G+V  I   H HG+ S+  ++V +AQ FV      PL+   G++G     G   +A 
Sbjct: 703  RLAGKVASIAGYH-HGEVSLSGTIVGMAQNFVGSGNNIPLLYPDGSYGTRLRGGKDHSAA 761

Query: 130  RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
            RY       +  ++    D+D  +     + E +EPV +    P +L NG  GI  G +T
Sbjct: 762  RYLSTYALPLTRILFPAEDDDLYERVL-EDNELNEPVNYLPILPMILVNGACGIGTGHST 820

Query: 190  SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
             IPSHN  +ICE     +DN E                         +  VE        
Sbjct: 821  EIPSHNPLDICEWIRCWLDNKEKPYLVP--------------WWRGFKGKVEVEDG---- 862

Query: 250  FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
               + R              ++E P  +        +  L   K I   ED   +     
Sbjct: 863  ---KGRTFGILEKLSKEKWRISETPVGLWTYDCKMHLETLEKNKHIKSFEDKYTDEEAAF 919

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             I           +L +   F L +M      ++ V        +        E    R+
Sbjct: 920  VITTTKDFTPTMSNLKLSKAFSLKNMTALDEDDVPVKFRSTEEILEKYCDARLELYQKRK 979

Query: 370  EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
            E L    S  +     +   LK +L   LN+ E   ++  + +       + S       
Sbjct: 980  EKLLNDLSQEIVKQANKQRFLKDVLNNVLNMKEQEDVLLKKMEEMNYDKWQNSFD----- 1034

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
             ++++ +R+L K    ++   L  L          L S K        E+   ++ + K 
Sbjct: 1035 YLVSMPIRTLTKGRLAEVGEILRKLKE-----KHSLLSDKSPKEMWKEELDTFEKKYKKD 1089


>gi|295315163|gb|ADF97669.1| gyrase subunit A [Campylobacter coli]
 gi|295315165|gb|ADF97670.1| gyrase subunit A [Campylobacter coli]
          Length = 77

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 65/77 (84%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFG 119
           Q F  RYP I GQGNFG
Sbjct: 61  QDFSMRYPSIDGQGNFG 77


>gi|183987566|gb|ACC65773.1| topoisomerase II [Pleurotus pulmonarius]
          Length = 692

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 12/186 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  L 
Sbjct: 513 KPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL- 570

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                 K A++VG +      H HG+ S   ++V LAQ +       L+S  G +G  D 
Sbjct: 571 --KKEIKVAQLVGYISEHAAYH-HGEMSSSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 627

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  L+    D+  +  R T +    EP  +    P +L NG  
Sbjct: 628 GGKDHASPRYIFTEIAPLTRLLCHPADDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAE 686

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 687 GIGTGW 692


>gi|3108059|gb|AAC15758.1| gyrase A [Enterococcus faecium]
          Length = 80

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/80 (61%), Positives = 65/80 (81%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            M+E+G+    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG
Sbjct: 1   GMNELGVTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQV 139
           ++DGD AAA RYTEARM+++
Sbjct: 61  SVDGDGAAAMRYTEARMSKI 80


>gi|15078758|ref|NP_149508.1| 045L [Invertebrate iridescent virus 6]
 gi|82039172|sp|Q9QSK1|TOP2_IIV6 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|5725647|gb|AAD48151.1|AF083915_5 045L [Invertebrate iridescent virus 6]
          Length = 1132

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 82/483 (16%), Positives = 183/483 (37%), Gaps = 54/483 (11%)

Query: 13   VEENVKAVSLRFALEERYLAYALSTIKE--RAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                +  +++   + E  + ++   I++  R++P L DG K   R++I  + +     G 
Sbjct: 684  SPNKILQLNISTFINEELIKFS---IEDCKRSLPHLIDGLKESQRKVIFGLKQWN---GK 737

Query: 71   AFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
               K A++   V  K     HG+Q+++D+++++AQ F      PL+   G FG     G 
Sbjct: 738  NNIKVAQLGAFVAQKTDY-KHGEQNLFDTIIKMAQTFVGANNIPLLEEDGQFGTRLSGGK 796

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY--NEEDSEPVVFPSKFPNLLANGTSG 182
             AA+ RY       +   I +  D    D    Y  +    EPV +    P +  NG+ G
Sbjct: 797  DAASPRYIFVNQPPILNKIFRPED----DPILNYTLDG---EPVFYAPVIPLICINGSVG 849

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            +  G + +IP  N  EI +     I+  E   + + +Y             +      + 
Sbjct: 850  VGTGFSCNIPMFNPSEIIDGLKQWINMREQGEKYVFKY---------KPWYKGFTG--KI 898

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
             + G G +        E    G +   V+E+P  +   +  E   +   +  I   ++  
Sbjct: 899  EKNGSGRYISYGTLSNEASNNGMYQYTVSELPINMWTDKFKEMCDQYRESNLIKTCDNYS 958

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGIL 361
            + +  + +I    +    +          L         NM +        +   L+GI+
Sbjct: 959  EVTTVNFKISSEHELTIEN----------LKLRSYIHTSNMVMFDHEGKIHKYETLNGIM 1008

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID----EIIAIIRNEDKPKPVM 417
            + +   R ++  +R  + +Q +++ + I +       ++     +I+         + + 
Sbjct: 1009 QRFCKERIKIYEKRRQYMLQKLNKSLTISENKKRFMEDVMNQKIKILLQEDEVVHQQLLD 1068

Query: 418  VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            ++ +   E + D +LN+ +   RK    ++ S++D+L  +         +  +    +  
Sbjct: 1069 MNYYKDDEGEFDYLLNMNIGGFRKKNVDKLISKIDDLKKDIMW----YTNTNEGQMWLKD 1124

Query: 478  EIR 480
             + 
Sbjct: 1125 ILE 1127


>gi|69250185|ref|ZP_00605121.1| similar to Type IIA topoisomerase (DNA gyrase/topo II topoisomerase
           IV) A subunit [Enterococcus faecium DO]
 gi|68193993|gb|EAN08553.1| similar to Type IIA topoisomerase (DNA gyrase/topo II topoisomerase
           IV) A subunit [Enterococcus faecium DO]
          Length = 120

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 67/92 (72%), Gaps = 2/92 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK 
Sbjct: 3   KNAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 62

Query: 87  HPHGDQSVYDSLVRLAQPFV--QRYPLISGQG 116
           HPHGD + Y+++V +AQPF    R+ ++ G G
Sbjct: 63  HPHGDSACYEAMVLMAQPFSTVIRWLMVRGTG 94


>gi|212645657|ref|NP_495440.4| Chromosome INstability family member (cin-4) [Caenorhabditis
           elegans]
 gi|158514533|gb|ABW69249.1| chromosome instability 4 [Caenorhabditis elegans]
 gi|187357187|gb|AAB93429.4| Chromosome instability protein 4, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 842

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 113/290 (38%), Gaps = 44/290 (15%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSLV 99
           +IP L DG KP  R+++ A  +          K A++ G V  I   H HG+QS+  ++V
Sbjct: 313 SIPCLVDGLKPGQRKVLFACFK---RANKREVKVAQLAGAVAEISAYH-HGEQSLMGTIV 368

Query: 100 RLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ +       L+   G FG     G  +A+ R   A+++QV   +    D++ + F 
Sbjct: 369 NLAQDYVGSHNINLLLPIGQFGTRLQGGKDSASARSIFAQLSQVTRTLFPAHDDNVLRFL 428

Query: 156 DTYNEEDSE-PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
             Y E     P  +    P +L NG  G   G +T+IP++N +E+ +    LI       
Sbjct: 429 --YEENQRIEPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKNIKRLI------- 479

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
                       P   +    +    +  ++    F       V +       I +TE+P
Sbjct: 480 ---------AGEPQKALAPWYKNFRGKIIQIDPSRFACYGEVSVLDDNT----IEITELP 526

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
            +       EK+           LE + + S +   +++  K    D  +
Sbjct: 527 IKQWTQDYKEKV-----------LEGLMESSDKKSPVIVDYKEYHTDTTV 565


>gi|284027757|gb|ADB66703.1| ParC [Salmonella enterica subsp. enterica]
          Length = 86

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 63/84 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD 
Sbjct: 2   YSMYVIIDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQG 116
           + Y+++V +A PF  R PL+ G G
Sbjct: 62  AYYEAMVLMALPFSYRNPLVDGHG 85


>gi|319444109|gb|ADV58132.1| ParC [Acinetobacter baumannii]
          Length = 93

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 64/91 (70%), Gaps = 1/91 (1%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
               KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S A
Sbjct: 3   SGKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFA 62

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           A RYTEA+++  +EL+L  + +   +++D +
Sbjct: 63  AMRYTEAKLSAYSELLLSELGQGTSEWQDNF 93


>gi|168181190|ref|ZP_02615854.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
 gi|182667970|gb|EDT79949.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
          Length = 241

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 58/140 (41%), Gaps = 3/140 (2%)

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
           + +  G     E S+  +  + G   + +  ++++  V    G D + VV +N   + F+
Sbjct: 1   MCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFN 60

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + +  M R   GV+  + +    +  +   I E  T +  +   + +  +     + +R
Sbjct: 61  EEDVRPMGRVATGVKAITLRKTDKAVSMDVVI-EDETLLSISENGFGKRTDIEEYPIHRR 119

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
           GG G +  K   ++G  + +
Sbjct: 120 GGKGVITYKITDKTGPIVGA 139



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 6/175 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L+A++ +E D L         D I++++ +G        ++         +   I L  
Sbjct: 23  GLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPMGRVATGV-KAITLRK 81

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVK 655
               V+  V      LL +S  G     +  E   + R GK  +     +K   +     
Sbjct: 82  TDKAVSMDVVIEDETLLSISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGARF 141

Query: 656 V-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           V   D + +V      +  ++ +I + SR   GV+L    +      I     E 
Sbjct: 142 VKEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 196


>gi|259493809|gb|ACW82745.1| DNA gyrase subunit A [Vibrio cholerae]
          Length = 80

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 52/80 (65%), Positives = 67/80 (83%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAE 141
           DGDSAAA RYTE RM+++A 
Sbjct: 61  DGDSAAAMRYTEVRMSKIAH 80


>gi|33578059|gb|AAQ22353.1| ParC [Salmonella enterica subsp. enterica serovar Stanley]
          Length = 83

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 64/83 (77%), Gaps = 1/83 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 119 GNIDG-DSAAAYRYTEARMTQVA 140
           G  D   S AA RYTE+R+++ A
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYA 83


>gi|82502212|gb|ABB80134.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 94

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 63/91 (69%), Gaps = 1/91 (1%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   
Sbjct: 1   LKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPK 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           S AA RYTEA+++  +EL+L  + +   +++
Sbjct: 61  SFAAMRYTEAKLSAYSELLLSELGQGTSEWQ 91


>gi|65431837|gb|AAY42595.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 80

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 55/80 (68%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+ 
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYYTLVRMAQPWS 60

Query: 107 QRYPLISGQGNFGNIDGDSA 126
            RYPL+ GQGNFG+   D  
Sbjct: 61  LRYPLVDGQGNFGSPGNDPP 80


>gi|66826863|ref|XP_646786.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|74997376|sp|Q55BP5|TOP2_DICDI RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
           topoisomerase II
 gi|60474622|gb|EAL72559.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1521

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 120/263 (45%), Gaps = 27/263 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            VK ++    + +  + ++++   ER+IP++ DG K  HR+ +++  +  L       K 
Sbjct: 745 GVKKLTYSDFINKELVLFSIAD-CERSIPNIVDGLKTSHRKTLYSCFKRNL---KKEIKV 800

Query: 76  ARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAY 129
           A+++G V      H HG+ S+Y ++V +AQ F       L++  G++G     G   ++ 
Sbjct: 801 AQLIGYVSEHSAYH-HGEASLYSTIVGMAQEFVGSNNINLLNPAGSYGTRIAGGKDCSSA 859

Query: 130 RYTEARMTQVAELILQGVDEDA----VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           RY   R+  +A  +    D+      VD     + +  +P  +    P +L NG  GI  
Sbjct: 860 RYIHTRLNDIARAVYHADDDPILSCVVD-----DGKKVQPKFYIPVIPMILVNGCVGIGT 914

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G +++IP++N +++ +     ID     ++ +  +  G  F       +  + +     L
Sbjct: 915 GWSSTIPNYNPRDLIQNMRLAIDGK--PLKPIKPWYRG--FLGSIEANQGSK-VQGGQYL 969

Query: 246 GRGGFRVRA--RWCVEEVGRGSW 266
            +G ++  +  R+ + E+  G W
Sbjct: 970 SKGIWKKLSDNRFEITELPIGFW 992


>gi|61657493|emb|CAI44405.1| ATP-dependent Clp protease, ATPase subunit [Thermotoga sp. KOL6]
          Length = 652

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 98/311 (31%), Gaps = 8/311 (2%)

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
            +  L+ +  ++  +L    +    +  E + +KE +                     A 
Sbjct: 288 NILKLVKKISEVKEILEKDVKVKEIMKKEFKYLKERYGDPRRTKITDEELRYDMEELIAE 347

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
               +       +  +     RS +     ++     E D ++  +        L ++  
Sbjct: 348 EDIVITLSHKGYLKSTPLSSYRSQRRGGKGITVSKLSEDDEVEFVVVTKNISSTLFITNL 407

Query: 570 GKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIV 626
           GKAY L             G  I   ++L   + +V     +   K L++V+  G     
Sbjct: 408 GKAYVLKNYQIETTGRNTRGRHISAFLNLEETEKVVALAPLNGKGKDLVIVTKHGKIKRT 467

Query: 627 EESEIIANTRK-GKTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR 683
              E    T   G   +++ + +++     +  +   + V  +   ++ F +  +  M R
Sbjct: 468 ALEEFENATSNRGVRAIRIEAGDEIISARVIDSERGSLVVATKLGMVIRFPVSDVRRMGR 527

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
              GV+    +       +     E     +    + + +     L  + KRGG G    
Sbjct: 528 NAAGVQAIKLQPDDEVVSMDVVPSENEGEILTVTEKGFGKRTPVELYRIQKRGGTGLRNI 587

Query: 742 KGFPRSGKFLS 752
               ++G  ++
Sbjct: 588 SDVKKTGYVVA 598



 Score = 84.1 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 8/145 (5%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAF 624
           +  G     P  ++     +  A    I L  + ++V+      ++  ++L V+ KG   
Sbjct: 509 TKLGMVIRFPVSDVRRMGRNA-AGVQAIKLQPDDEVVSMDVVPSENEGEILTVTEKGFGK 567

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPE 680
                      R G     +S  +K   +  V  V GD  + VV +N  ++   +  I  
Sbjct: 568 RTPVELYRIQKRGGTGLRNISDVKKTGYVVAVRYVRGDEEIVVVTKNGMMIRIPVSDIGI 627

Query: 681 MSR-GKGVRLQSYKDGGISDVICFK 704
           + R  KGV+L    D  IS V   K
Sbjct: 628 IGRITKGVKLIELGDDSISKVAVVK 652


>gi|217069463|gb|ACJ83220.1| DNA gyrase subunit A [Campylobacter lari subsp. lari]
          Length = 194

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 131/193 (67%), Gaps = 2/193 (1%)

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 1   LAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 60

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L LIDN E S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VRA+  +
Sbjct: 61  LIDGLLYLIDNKESSLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVRAKTHI 119

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+    R
Sbjct: 120 -EKRANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKR 178

Query: 319 SLDPDLLMESIFM 331
               ++++ ++F 
Sbjct: 179 DAMSEIVLNNLFK 191


>gi|217069483|gb|ACJ83230.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 196

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 131/193 (67%), Gaps = 2/193 (1%)

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 3   LAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 62

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L LIDN E S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VRA+  +
Sbjct: 63  LIDGLLYLIDNKESSLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVRAKTHI 121

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+    R
Sbjct: 122 -EKRANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKR 180

Query: 319 SLDPDLLMESIFM 331
               ++++ ++F 
Sbjct: 181 DAMSEIVLNNLFK 193


>gi|40781641|gb|AAR89826.1| gyrase [Enterococcus gallinarum]
          Length = 80

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 64/80 (80%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEARM+++A 
Sbjct: 1   VMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAM 60

Query: 142 LILQGVDEDAVDFRDTYNEE 161
            +L+ +++D VDF+  Y++ 
Sbjct: 61  EMLRDINKDTVDFQSNYDDT 80


>gi|217069465|gb|ACJ83221.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 194

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 131/193 (67%), Gaps = 2/193 (1%)

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 3   LAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 62

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L LIDN E S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VRA+  +
Sbjct: 63  LIDGLLYLIDNKESSLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVRAKTHI 121

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+    R
Sbjct: 122 -EKRANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKR 180

Query: 319 SLDPDLLMESIFM 331
               ++++ ++F 
Sbjct: 181 DAMSEIVLNNLFK 193


>gi|1053073|gb|AAA80683.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803]
          Length = 71

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 46/70 (65%), Positives = 57/70 (81%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++AM E+GL     F+K AR+VG+V+GK HPHGDQSVYD+LVR+
Sbjct: 2   ALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGDVLGKYHPHGDQSVYDALVRM 61

Query: 102 AQPFVQRYPL 111
            Q F  RYPL
Sbjct: 62  VQDFSSRYPL 71


>gi|183987578|gb|ACC65779.1| topoisomerase II [Lyophyllum shimeji]
          Length = 692

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 14/187 (7%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++  ++ +     + +  + ++++    R+IP + DG KP  R+++ A  +  L 
Sbjct: 513 KPGTYLDHRLEEIPYSEFINKELILFSMADNI-RSIPSVADGLKPGQRKVMWACFKRKL- 570

Query: 68  FGAAFKKSARIVGEVIG---KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                 K A++VG  IG     H HG+ S+  ++V LAQ F       L+  +G +G   
Sbjct: 571 --KKEIKVAQLVGY-IGEQAAYH-HGEVSLAQTIVNLAQNFVGSNNLNLLDPRGQYGTRE 626

Query: 122 -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
             G + A+ RY   +   ++ +I    D+  ++ +   +    EP  +    P  L NG 
Sbjct: 627 QGGKNHASPRYIFTQPMSISRVIFNPADDALLNAQKD-DNMVIEPEWYMPIVPMTLINGA 685

Query: 181 SGIAVGM 187
            GI  G 
Sbjct: 686 EGIGTGW 692


>gi|183987582|gb|ACC65781.1| topoisomerase II [Pleurotus salmoneostramineus]
          Length = 552

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++ N++ +     + +  + ++++    R+IP + DG KP  R++I    +  L 
Sbjct: 373 KPGTYLDHNLEEIPYTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRNL- 430

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                 K A++VG +      H HG+ S+  +++ LAQ +       L+   G +G  D 
Sbjct: 431 --KKEIKVAQLVGYISEHAAYH-HGEASLAATIINLAQNYVGSNNINLLMPNGQYGTRDQ 487

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    ++ +  +I    D+  +  R T +    EP  +    P +L NG  
Sbjct: 488 GGKDHASPRYIFTEVSPLTRMICHPEDDPLLK-RQTDDNLLVEPEWYMPILPLVLVNGAD 546

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 547 GIGTGW 552


>gi|183987592|gb|ACC65786.1| topoisomerase II [Pleurotus flabellatus]
          Length = 701

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++ N++ +     + +  + ++++    R+IP + DG KP  R++I    +  L 
Sbjct: 522 KPGTYLDHNLEEIPYTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRNL- 579

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                 K A++VG +      H HG+ S+  +++ LAQ +       L+   G +G  D 
Sbjct: 580 --KKEIKVAQLVGYISEHAAYH-HGEASLAATIINLAQNYVGSNNINLLMPNGQYGTRDQ 636

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    ++ +  +I    D+  +  R T +    EP  +    P +L NG  
Sbjct: 637 GGKDHASPRYIFTEVSPLTRMICHPADDPLLK-RQTDDNLLVEPEWYMPILPLVLVNGAD 695

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 696 GIGTGW 701


>gi|50551479|ref|XP_503213.1| YALI0D23969p [Yarrowia lipolytica]
 gi|49649081|emb|CAG81413.1| YALI0D23969p [Yarrowia lipolytica]
          Length = 1537

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 152/400 (38%), Gaps = 35/400 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++  +  + +   + +  + ++++    R+I  + DGFKP  R+++    +    
Sbjct: 751  KPGTHLDPKLTHIPVSDFINKELILFSMADNM-RSIASVCDGFKPGQRKVLFGSFKRKFT 809

Query: 68   FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                    A++VG +      H HG+ S+  +++ +AQ F       L+   G FG+   
Sbjct: 810  VSIR---VAQLVGYISEHTGYH-HGEASLGSTIMAMAQDFAGSNNIYLMKPDGGFGSRSQ 865

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AAA RY +  +  + + I    DE   ++  T ++   EP  +    P LL NG  
Sbjct: 866  GGKDAAAMRYAQTELMDITKAIFNKQDEPLYNYV-TDDDTPVEPEYYLPVLPMLLVNGCE 924

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP +N  +I +    ++   +     ++ +  G                 E
Sbjct: 925  GIGSGWSTSIPPYNPLDIVDNLRRML--KDEPPVPMIPWFRG---------WHG-----E 968

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK-IAELIIAKRIPLLED 300
               +G G ++V+      +       + +TE+P ++    + E  ++ LI +K      +
Sbjct: 969  VEPVGDGRYKVKGLIEQVDERT----LCITELPARMWTISMKEFLLSSLIDSKNEKGWIE 1024

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLD 358
               E            +           +     + +    +  V     GR+ +    +
Sbjct: 1025 DFTEDHGFRVKFNITLSEKEMEKTRQIGLRERFKLISSLSTSNMVAFDPEGRIKKYDSPE 1084

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             I+KE+   R E   +R    +   ++++E L        
Sbjct: 1085 AIMKEYFPVRLEFYQKRKDRLVSDFEQQLEKLTAQARFIK 1124


>gi|314121841|ref|YP_004063960.1| gp52 DNA topisomerase II medium subunit [Enterobacteria phage
           vB_EcoM-VR7]
 gi|313151598|gb|ADR32654.1| gp52 DNA topisomerase II medium subunit [Enterobacteria phage
           vB_EcoM-VR7]
          Length = 444

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 97/451 (21%), Positives = 171/451 (37%), Gaps = 34/451 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL+  ++   L+YA+ T++ RAIP++ DGFKPVHR ++    ++       F K A I
Sbjct: 6   PRSLKDIIDVEALSYAIYTVEGRAIPNMIDGFKPVHRFVMARALDLARGDKNKFHKVASI 65

Query: 79  VGEVI-GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            G V     H HG+ S  ++   L   +   YP+  GQGNFG+     A++ RY  AR++
Sbjct: 66  AGGVADYGYH-HGEASAEEATSGLVATYKNEYPMFDGQGNFGSRMVPEASSARYVFARVS 124

Query: 138 QVAELILQGVDEDAVDFRDTY-NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +    + +       ++   + +EE   P  +    P +L N TSGIAVG AT I  H+ 
Sbjct: 125 KNFYNLFKD-----TEYAPVHPDEEHKPPAFYLPVIPTVLLNATSGIAVGFATDILPHSF 179

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           Q++ EA  A+++  E    K+        +P     V   E   +    G      R + 
Sbjct: 180 QDVKEAVKAIVEGREPVAPKV-------KYPEFRGEVVELEEPGKYELHGTYKMTSRTQM 232

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +            TEIP Q    +   KI + +  K     +D   E     +I    K
Sbjct: 233 EI------------TEIPVQWNLEKYTSKILDPLEEKGFITWKDNCGEHGFGFKIKF-RK 279

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR- 375
              LD         ++ D      L+ N+  +    ++      L               
Sbjct: 280 EYKLDGTEEENHEKIMKDFGLIEKLSQNLTVLNHKGKLAEYTNTLDLIRDFVDVRKTYVQ 339

Query: 376 ----SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
               S  +      ++   K   I  +   +++   +   K    + +     +   + +
Sbjct: 340 VRIDSKIKETEAAFKLARAKVFFIKEVIDGKVVIQGKPRKKLIEELQASEIYGDY-AEKL 398

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           + + +  +   E  ++  E     AE E   
Sbjct: 399 VAMNIYHMTSDEAKKLADEAKAKKAEHEYWK 429


>gi|52352239|gb|AAU43281.1| DNA topoisomerase [Acinetobacter baumannii]
          Length = 92

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 64/92 (69%), Gaps = 1/92 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+ +
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDFACYEAMVLMAQPFSYRYPLIEGQGNWAS 60

Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDA 151
            D   S AA RYTEA+++  +EL+L  + +  
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLLSELGQGT 92


>gi|313760372|emb|CBY65970.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
 gi|313760376|emb|CBY65972.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
 gi|313760378|emb|CBY65973.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 79

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/79 (53%), Positives = 54/79 (68%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQ
Sbjct: 1   RVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEA 134
           GNFG+   D  AA RYTEA
Sbjct: 61  GNFGSPGNDPPAAMRYTEA 79


>gi|183987590|gb|ACC65785.1| topoisomerase II [Pleurotus djamor]
          Length = 735

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++ N++ +     + +  + ++++    R+IP + DG KP  R++I    +  L 
Sbjct: 556 KPGTYLDHNLEEIPYTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRNL- 613

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                 K A++VG +      H HG+ S+  +++ LAQ +       L+   G +G  D 
Sbjct: 614 --KKEIKVAQLVGYISEHATYH-HGEASLAATIINLAQNYVGSNNINLLMPNGQYGTRDQ 670

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    ++ +  +I    D+  +  R T +    EP  +    P +L NG  
Sbjct: 671 GGKDHASPRYIFTEVSPLTRMICHPADDPLLK-RQTDDNLLVEPEWYMPILPLVLVNGAD 729

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 730 GIGTGW 735


>gi|85707862|ref|ZP_01038928.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
 gi|85689396|gb|EAQ29399.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
          Length = 156

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 70/103 (67%), Gaps = 1/103 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     ++ +    + +       AL ERYL YALSTI  R++PDLRDG KPVHRR++  
Sbjct: 1   MAEPTTTDDSDEF-DTIVDAPFDAALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWT 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           M ++ LD  + FKKSAR+VGEVIGK HPHGD + YD++VRLAQ
Sbjct: 60  MRQLKLDPSSGFKKSARVVGEVIGKYHPHGDTAAYDAMVRLAQ 102


>gi|217069481|gb|ACJ83229.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 201

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/198 (43%), Positives = 133/198 (67%), Gaps = 2/198 (1%)

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE +L+ +++D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 4   LAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 63

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L LIDN   S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VRA+  +
Sbjct: 64  LIDGLLYLIDNKNASLEEIMQFIKGPDFPTGG-IIFGKKGIIEAYRTGRGRVKVRAKTHI 122

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E       IV+ E+PYQ  K+RLIE+IAEL   K+I  + ++RDES  +   V+    R
Sbjct: 123 -EKRVNKDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIRVVIELKR 181

Query: 319 SLDPDLLMESIFMLSDME 336
               ++++ ++F  + ME
Sbjct: 182 DAMSEIVLNNLFKSTTME 199


>gi|183987564|gb|ACC65772.1| topoisomerase II [Pleurotus abalonus]
          Length = 692

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++ N++ +     + +  + ++++    R+IP + DG KP  R++I    +  L 
Sbjct: 513 KPGTYLDHNIEEIPYSDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL- 570

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                 K A++VG +      H HG+ S+  ++V LAQ +       L+   G +G  D 
Sbjct: 571 --KKEIKVAQLVGYISEHAAYH-HGETSLAATIVNLAQNYVGSNNINLLKPNGQYGTRDQ 627

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  +I    D+  +  R T +    EP  +    P +L NG  
Sbjct: 628 GGKDHASPRYIYTEVMPLTRMICHPADDPLLK-RQTDDNLLVEPEWYMPVVPLVLINGAE 686

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 687 GIGTGW 692


>gi|217069487|gb|ACJ83232.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 190

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 84/184 (45%), Positives = 126/184 (68%), Gaps = 2/184 (1%)

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H+
Sbjct: 1   MTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHS 60

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  L L+D+ + S+E L+++I GPDFPTGG I+  ++ I+E+YR GRG  ++RA+
Sbjct: 61  LNELVDGLLYLLDHKDASLEDLMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKIRAK 119

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             + E       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  +   V+  
Sbjct: 120 THI-EKKSNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIE 178

Query: 316 KNRS 319
             R 
Sbjct: 179 LKRE 182


>gi|289677156|ref|ZP_06498046.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 80

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/80 (51%), Positives = 58/80 (72%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++A  +L  + +
Sbjct: 1   GDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLHK 60

Query: 150 DAVDFRDTYNEEDSEPVVFP 169
           + VD+   Y+  +  P V P
Sbjct: 61  ETVDWVPNYDGTEMIPAVLP 80


>gi|326536392|ref|YP_004300833.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage 133]
 gi|299483473|gb|ADJ19567.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage 133]
          Length = 442

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 88/460 (19%), Positives = 163/460 (35%), Gaps = 35/460 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   +      +AL T++ RAIP+L DG KPV R ++H   ++       + K A + G 
Sbjct: 8   LTDIINGEARDFALYTVENRAIPNLMDGLKPVQRFVLHRAIQLCKSKPDDYHKLAGVAGA 67

Query: 82  --VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
              +G  H HG+ S  D+   +A  +    P++ G+GNFG+     AAA RY E R+   
Sbjct: 68  AASLG-YH-HGEVSAQDAGALMANTWNNNCPILDGKGNFGSRLVQKAAASRYIECRVHDN 125

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
                    +D        +++   P  +    P +L NG  GI  G AT+I  H+   I
Sbjct: 126 FRKYF----KDTEVAPAHKDDDHIPPAYYLPIIPMVLINGVQGIGTGFATNILPHSEASI 181

Query: 200 CEAAL-ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
            E    AL    +   +       G                          + +   + +
Sbjct: 182 IECTKLALQGKLDKEPQVQFPQFKG-----------------TVVCNDENKYSLFGSYKL 224

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
                G   I +TEIPY+  ++  +E   +++ +  + +  D           V   K  
Sbjct: 225 I----GKTQIEITEIPYKYDRADYVENCLDILESDGLIVSYDDNCGKHGFGFKVKLAKAF 280

Query: 319 SLDPDLLMESIF--MLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR- 375
           +L  D      +      ++      +  +      +  P    L       R+   +  
Sbjct: 281 NLPEDEAKRHAYIVDKFKLKQDITQFIYTIDEVGALRGFPNASSLIHHFVEVRKQFVQAR 340

Query: 376 --SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
                     + ++ I K   I  +    I+   +   + K  +V+      + VDA+L+
Sbjct: 341 IDKKTEEARRNLQLAIAKAFFIRKVLDGTIVIKGKKRQELKDEIVALGEPFASNVDALLS 400

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           L +  + + E  ++        +E E   S     +   +
Sbjct: 401 LNVYHMAEDEAVKLLERAQEAKSELEYWTSTDAVTEYMKD 440


>gi|1498007|gb|AAB06320.1| DNA gyrase A subunit [Campylobacter lari subsp. lari]
          Length = 77

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 65/77 (84%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           HRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I 
Sbjct: 1   HRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSID 60

Query: 114 GQGNFGNIDGDSAAAYR 130
           GQGNFG+IDGD AAA R
Sbjct: 61  GQGNFGSIDGDGAAAMR 77


>gi|27542585|gb|AAO16893.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 76

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 47/76 (61%), Positives = 63/76 (82%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDE 149
            R+ ++A  ++  +++
Sbjct: 61  IRLAKIAHELMADLEK 76


>gi|28916612|gb|AAO59539.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 197

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 83/198 (41%), Positives = 129/198 (65%), Gaps = 1/198 (0%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D +D++D Y+  + +PVV PS+ PNLL NG +GIAVGMAT+IP H + EI +  LA  +
Sbjct: 1   KDTIDYQDNYDGSEGDPVVLPSRLPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAGSE 60

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           NP I I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I
Sbjct: 61  NPGIPIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERI 119

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +
Sbjct: 120 IVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNN 179

Query: 329 IFMLSDMETRFPLNMNVL 346
           ++  + ++T F +N+  L
Sbjct: 180 LYKQTALQTSFGINLLAL 197


>gi|308814624|ref|YP_003934898.1| topoisomerase II medium subunit [Shigella phage SP18]
 gi|308206216|gb|ADO19615.1| topoisomerase II medium subunit [Shigella phage SP18]
          Length = 443

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 96/454 (21%), Positives = 171/454 (37%), Gaps = 34/454 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L+  ++   L+YA+ T++ RAIP++ DGFKPVHR ++    ++       F K 
Sbjct: 2   QLNKRDLKDIIDVEALSYAIYTVEGRAIPNMIDGFKPVHRFVMARALDLARGDKNKFHKV 61

Query: 76  ARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           A I G V     H HG+ S  ++   L   +   YP+  GQGNFG+     A++ RY  A
Sbjct: 62  ASIAGGVADYGYH-HGEASAEEATSGLVATYKNEYPMFDGQGNFGSRMVPEASSARYVFA 120

Query: 135 RMTQVAELILQGVDEDAVDFRDTY-NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R+++    + +       ++   + +EE   P  +    P +L N TSGIAVG AT I  
Sbjct: 121 RVSKNFYNLFKD-----TEYAPVHPDEEHKPPAFYLPVIPTVLLNATSGIAVGFATDILP 175

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H+ Q++ EA  A+++  E    K+        +P     V   E   +    G      R
Sbjct: 176 HSFQDVKEAVKAIVEGREPVAPKV-------KYPEFRGEVVELEEPGKYELHGTYKMTSR 228

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +            TEIP Q    +   KI + +  K     +D   E     +I  
Sbjct: 229 TQMEI------------TEIPVQWNLEKYTSKILDPLEEKGFITWKDNCGEHGFGFKIKF 276

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K   LD         ++ D      L+ N+  +    ++      L            
Sbjct: 277 -RKEYKLDGTEEENHEKIMKDFGLIEKLSQNLTVLNHKGKLAEYTNTLDLIRDFVDVRKT 335

Query: 374 RR-----SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
                  S  +      ++   K   I  +   +++   +   K    + +     +   
Sbjct: 336 YVQVRIDSKIKETEAAFKLARAKVFFIKEVIDGKVVIQGKPRKKLIEELQASEIYGDY-A 394

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           + ++ + +  +   E  ++  E     AE E   
Sbjct: 395 EKLVAMNIYHMTSDEAKKLADEAKAKKAEHEYWK 428


>gi|217069475|gb|ACJ83226.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 191

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 86/193 (44%), Positives = 131/193 (67%), Gaps = 2/193 (1%)

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H+
Sbjct: 1   MTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHS 60

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  L LIDN E S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VRA+
Sbjct: 61  LNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVRAK 119

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             + E       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+  
Sbjct: 120 THI-EKRANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIE 178

Query: 316 KNRSLDPDLLMES 328
             R    ++++ +
Sbjct: 179 LKRDAMSEIVLNN 191


>gi|145480573|ref|XP_001426309.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393383|emb|CAK58911.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1196

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 87/495 (17%), Positives = 166/495 (33%), Gaps = 37/495 (7%)

Query: 34  ALSTIKE--RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI--GKLHPH 89
           A+ +I +  R+IP   DG KP  R+IIH +    L+      K + + G V    + H H
Sbjct: 356 AMHSISDNLRSIPSSIDGLKPTQRKIIHTL----LNHSKQEYKVSSLSGLVTTYAQYH-H 410

Query: 90  GDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQ 145
           G+QS+  ++V +AQ F       L+   G FG  ++ G  AA  RY   +++ +   +  
Sbjct: 411 GEQSLQQTVVAMAQNFTGSNNINLLLPIGQFGTRSMGGKDAAQARYISTKLSSLTTKLFN 470

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             D   +++ D       EP  F    P +L NG  GI  G +T +P+ N +EIC+    
Sbjct: 471 EDDLHTLNYLD-EEGYTVEPFWFTPILPLVLINGAEGIGTGWSTQVPNFNPREICQ---- 525

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
                     ++   + G +F       +       S   G   +  +  +   +     
Sbjct: 526 ----------QIKRKLRGEEFEELVPWYKGFTG---SITAGTNQYIAKGSFIQHKNHLYI 572

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I   +     +    I+   E+   K  P + D++ E     ++    K         
Sbjct: 573 TEIPPKKS--VKEYQAFIQSKMEVAEGKSEPEILDMK-EYHAGNKVCFELKVTDEVLKQD 629

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +E  F L          +     G + +   +  IL E+   R +    R  + +     
Sbjct: 630 IEKYFKL-QTTIAMTNLVLFNEKGLLKRYSNVSEILDEFYQTRIKFYQLRKEYLLSKYQN 688

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
            +E+++        + +    +R   K +     +    +           R + K  + 
Sbjct: 689 ELELVQSKSKFIEGMIDNSIQLRGLKKMEMCKKLQSLGFKGISKMEKVKSTR-ISKDFDA 747

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
               +  + L      +           QI   +++     +K T          E    
Sbjct: 748 DNLEKQYDYLLSMPMWNFSEEKITAFKQQIKQ-LQDQITALNKKTPQQIWSEDLDEFLEE 806

Query: 506 DKATLQQAMIEKEPI 520
                +Q   E    
Sbjct: 807 LTKVEEQETQEMIKR 821


>gi|83953741|ref|ZP_00962462.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83841686|gb|EAP80855.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 520

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 148/441 (33%), Gaps = 80/441 (18%)

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR--NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
              E  + L+      ++I+  I   ++          ++L+E Q  AIL LRL+ L ++
Sbjct: 18  DAAEAREKLMTRRWPAEQILQYIALIDDPTHTANDDGTYNLSEAQARAILELRLQRLTQI 77

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
              ++  EL+ L  + ++   +L S ++    I+ E+ EVK+ F+       RRT   + 
Sbjct: 78  GVKEVTDELEELAKKIKEYLEILGSRERIMGIISDELAEVKDQFAVP-----RRTEIVDW 132

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIA 554
           S        + +I +E + V +++ G+I+          +     +S +  KE D +   
Sbjct: 133 SGDMD---DEDLIAREDMVVTVTSGGYIKRTPLVDFRSQRRGGKGVSGMQTKEEDVVTTL 189

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD--- 609
             A+T  ++L  +TDG  Y L    L        G+AI  ++ +     I      D   
Sbjct: 190 FVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDE 249

Query: 610 ---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKV-TGDHVA 662
                 +++  +S G     + S+     R GK  +K   +     +         D V 
Sbjct: 250 KEWDDLQVVFATSAGTVRRNKLSDFTNVMRNGKIAMKFEDDHADTTLINARIASNDDDVM 309

Query: 663 VVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVICF----------------- 703
           +V  + + + F    +    SR   GVR            +                   
Sbjct: 310 LVTNSGRAIRFPATDVRVFNSRASVGVRGIKLNGDDKVVSMSIIRHFDASSEERTAYLKM 369

Query: 704 --------KICEGL-----------------------TWIDSAGRSYNRSENDLLGWLGK 732
                      EG                          +    +   +  +     +  
Sbjct: 370 RRAMAGLADDAEGDEDEAPADPNFSQERYAEMSAAENLLLTITEKGAGKLSSSHDYPVRG 429

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           RGG+G        R G  ++S
Sbjct: 430 RGGLGVTAMDKAMRGGDIVAS 450



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 5/107 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   LL ++ KG   +    +     R G     +        +     V   D + +  
Sbjct: 404 AENLLLTITEKGAGKLSSSHDYPVRGRGGLGVTAMDKAMRGGDIVASFPVEMDDQIMLAT 463

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
              + +   ++ I   SR   GV++     G +   + +   +G   
Sbjct: 464 SKGQSIRVPVEGISFRSRSAGGVKVFDTGRGEVVVSVAWIADQGDET 510


>gi|121533295|ref|ZP_01665123.1| DNA gyrase C-terminal repeat, beta-propeller [Thermosinus
           carboxydivorans Nor1]
 gi|121307854|gb|EAX48768.1| DNA gyrase C-terminal repeat, beta-propeller [Thermosinus
           carboxydivorans Nor1]
          Length = 199

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 3/139 (2%)

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + + KG     E  E     + G   L +  ++++  V    G+ H+ +   +   + F 
Sbjct: 1   MATKKGIVKKTELLEFDTARKIGLIALTLDEDDELIDVKLTNGEQHILLGTRDGMAINFP 60

Query: 675 IDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
             Q+  M R   GV+  + +DG +   +     +G   +      Y +           R
Sbjct: 61  ESQVRVMGRTAHGVKGITLRDGDVVVGMDTVKKDG-HVLTVTEAGYGKRTPVEEYRQQSR 119

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           GG G +  K   ++GK + 
Sbjct: 120 GGKGLINNKITEKTGKVIG 138



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 10/195 (5%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++     +    +  + L AL   E D L      +    ILL + DG A   P   +  
Sbjct: 7   IVKKTELLEFDTARKIGLIALTLDEDDELIDVKLTNGEQHILLGTRDGMAINFPESQVRV 66

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                      I L     +V          +L V+  G        E    +R GK  +
Sbjct: 67  MGRTA-HGVKGITLRDGDVVVGMDTVKKDGHVLTVTEAGYGKRTPVEEYRQQSRGGKGLI 125

Query: 643 KVSSEEK------MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
                EK      +K+V    G  + ++  +  ++   +D+I    R  +GV++ S  + 
Sbjct: 126 NNKITEKTGKVIGLKVVRP--GQELMLITGDGVVIRTKVDEISVTGRNTQGVKVMSVGEN 183

Query: 696 GISDVICFKICEGLT 710
                +     +  +
Sbjct: 184 DRVVALAAVDKKSDS 198



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 43/143 (30%), Gaps = 2/143 (1%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      +R +   +  +  +  ++GD +           +L ++  G     P
Sbjct: 51  TRDGMAINFPESQVRVMGRTAHGVKGITLRDGDVVVGMDTVKKDGHVLTVTEAGYGKRTP 110

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                     G+ +           ++   V     +L++++  G     +  EI    R
Sbjct: 111 VEEYRQQSRGGKGLINNKITEKTGKVIGLKVVRPGQELMLITGDGVVIRTKVDEISVTGR 170

Query: 637 K--GKTFLKVSSEEKMKLVVKVT 657
              G   + V   +++  +  V 
Sbjct: 171 NTQGVKVMSVGENDRVVALAAVD 193


>gi|202073599|gb|ACH96270.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
 gi|202073601|gb|ACH96271.1| DNA gyrase subunit A [Waddlia chondrophila]
          Length = 82

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 58/82 (70%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KP  RRI++AM  + L  G   +K A+I G+  G  HPHG+Q +Y +LVR+AQP++ RY 
Sbjct: 1   KPSQRRILYAMRLLNLSPGGKHRKCAKISGDTSGDFHPHGEQVIYPTLVRMAQPWMMRYR 60

Query: 111 LISGQGNFGNIDGDSAAAYRYT 132
           L+ GQGNFG++DGD  AA RYT
Sbjct: 61  LVDGQGNFGSVDGDPPAAMRYT 82


>gi|213023935|ref|ZP_03338382.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 265

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 97/270 (35%), Gaps = 24/270 (8%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    I  E+  +++ F        RRT   E++        + +I +E + V +S+
Sbjct: 5   SADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQEDVVVTLSH 56

Query: 527 RGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           +G+          + +      SA   KE D +   L A+T D IL  S+ G+ Y +   
Sbjct: 57  QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 116

Query: 579 NLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            L        G  I  L+ L  N+ I        Y+    + + ++ G       +E   
Sbjct: 117 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSR 176

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
               G   + ++  +++  V   +G D V +     K++ F  D +  M R   GVR   
Sbjct: 177 PRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIK 236

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNR 721
                    +     EG   +      Y +
Sbjct: 237 LAGDDKVVSLIIPRGEGA-ILTVTQNGYGK 265


>gi|23428783|gb|AAM21722.1| topoisomerase II subunit A [Legionella pneumophila]
          Length = 78

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RYTE RM+
Sbjct: 4   IVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRYTEVRMS 63

Query: 138 QVAELILQGVDEDAV 152
           +VA  +L  ++++ V
Sbjct: 64  KVAHALLADLEKETV 78


>gi|312299479|gb|ADQ73655.1| GyrA [Neisseria meningitidis]
          Length = 80

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 51/80 (63%), Positives = 65/80 (81%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGN
Sbjct: 1   LYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGN 60

Query: 118 FGNIDGDSAAAYRYTEARMT 137
           FG++DG +AAA RYTE RM 
Sbjct: 61  FGSVDGLAAAAMRYTEIRMA 80


>gi|161598231|gb|ABX74936.1| topoisomerase IV [Ureaplasma urealyticum]
          Length = 89

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 62/87 (71%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AA
Sbjct: 3   HDKPYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAA 62

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDF 154
           A RYTE R++++A ++L  + +D V F
Sbjct: 63  AMRYTETRLSKIASVMLTNLKKDVVKF 89


>gi|284504201|ref|YP_003406916.1| DNA topoisomerase II [Marseillevirus]
 gi|282935639|gb|ADB03954.1| DNA topoisomerase II [Marseillevirus]
          Length = 1089

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 83/478 (17%), Positives = 175/478 (36%), Gaps = 47/478 (9%)

Query: 19   AVSLRFALEERYLAY--ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             +SL   +++R   Y  A +    R+IP + DG KP  R++++A     +      K   
Sbjct: 645  ELSLSDFIDKRLSTYHRANN---RRSIPSVFDGLKPSQRKVLYACFSSNIIGKNKKKHVD 701

Query: 77   RIVGEV--IGKLHPHGDQSVYDSLVRLAQPFV---QRYPLISGQGNFGN--IDGDSAAAY 129
            R+ GEV  +   H HG++S+ ++++ +AQ FV       L++  G+FG     G   +A 
Sbjct: 702  RLTGEVASVAGYH-HGEKSLTETIIGMAQDFVGCGNNVRLLNPDGSFGTRLRGGKDHSAS 760

Query: 130  RYTEARMTQVAELILQGVDEDAVDFRDTY-NEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RY  + + ++A ++    D+D   +   + + E +EP+ +    P ++ NG  GI  G +
Sbjct: 761  RYLSSFVEKIARVVFPPEDDDL--YEKVFEDNEYNEPINYIPIIPLIVVNGACGIGTGHS 818

Query: 189  TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            T IP HN  E+C             +E+     + P +       E  E   +    G  
Sbjct: 819  TEIPPHNPLEVCHWIRCW-------LEEQETPKLSPWWKGFNGTTEVEED--KVKTFGVL 869

Query: 249  GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
                + +W + E   G W     +    ++  + I+   +    ++   +  I       
Sbjct: 870  EKMSKTKWKIVETPVGLWTYDCKKHLESLETQKHIKSFEDKYTDEKASFI--INTTKDFI 927

Query: 309  VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              I     + +     +       + ++      ++ + +   P+ + L    K+     
Sbjct: 928  PTIKNLKLSTTFSLRNMTALDEKDNPVK---FSTVDDILLKYCPERLRLYQKRKD----- 979

Query: 369  REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
                 +  +   Q I ++    + L      I E+        +    M           
Sbjct: 980  -----KMLADLSQEILKQANKQRFLKDVLDGILEMKQQEELLLQKMEDMAYDKW--NGSY 1032

Query: 429  DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            D ++ + +R+L K    ++   L  L            S +        E+   ++ +
Sbjct: 1033 DYLIGMPIRTLTKGRLREVGEILRKLKE-----KHAELSERTPKEMWKSELEVFEKKY 1085


>gi|313760374|emb|CBY65971.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 79

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 54/79 (68%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++AM + G     +  KSAR V E +G  HPHGD S+Y SLVR+AQP+  RYPL+ GQ
Sbjct: 1   RVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYASLVRMAQPWSLRYPLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEA 134
           GNFG+   D  AA RYTEA
Sbjct: 61  GNFGSPGNDPPAAMRYTEA 79


>gi|217069471|gb|ACJ83224.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 190

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 84/191 (43%), Positives = 129/191 (67%), Gaps = 2/191 (1%)

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ 
Sbjct: 1   EELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELI 60

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  L LIDN E S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VRA+  + E
Sbjct: 61  DGLLYLIDNKESSLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVRAKTHI-E 118

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+    R  
Sbjct: 119 KRANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDA 178

Query: 321 DPDLLMESIFM 331
             ++++ ++F 
Sbjct: 179 MSEIVLNNLFK 189


>gi|3152711|gb|AAC17124.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 77

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 45/77 (58%), Positives = 61/77 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DG
Sbjct: 1   LGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDG 60

Query: 124 DSAAAYRYTEARMTQVA 140
           DSAAA RYTEARM+++A
Sbjct: 61  DSAAAQRYTEARMSKIA 77


>gi|217069491|gb|ACJ83234.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 187

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/189 (42%), Positives = 128/189 (67%), Gaps = 2/189 (1%)

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ +
Sbjct: 1   ELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVD 60

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             L L+D+ + S+E L+++I GPDFPTGG I+  ++ I+E+YR GRG  ++RA+  + E 
Sbjct: 61  GLLYLLDHKDASLEDLMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKIRAKTHI-EK 118

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
                 IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  +   V+    R   
Sbjct: 119 KSNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAM 178

Query: 322 PDLLMESIF 330
            ++++ ++F
Sbjct: 179 SEIVLNNLF 187


>gi|194354444|gb|ACF54720.1| gyrase A [Mycobacterium tuberculosis]
          Length = 156

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 5/157 (3%)

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVG
Sbjct: 1   AAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVG 60

Query: 187 MATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ +A          + E ++  ++  + GPDFPT G ++   +   ++
Sbjct: 61  MATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAG-LIVGSQGTADA 119

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
           Y+ GRG  R+R    VEE  RG   +V+TE+PYQV  
Sbjct: 120 YKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNH 156


>gi|310816011|ref|YP_003963975.1| DNA gyrase subunit A [Ketogulonicigenium vulgare Y25]
 gi|308754746|gb|ADO42675.1| DNA gyrase subunit A [Ketogulonicigenium vulgare Y25]
          Length = 487

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 139/411 (33%), Gaps = 74/411 (18%)

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           ++          ++L++ Q  AIL LRL+ L ++   ++  EL  L A+      +L+S 
Sbjct: 18  DDPSHTMNDDGTYNLSDLQARAILELRLQRLTQIGVKEVTDELQELAAKIRDYLDILSSR 77

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++    I  E+ EV++ F+       RRT   + +        + +IE+E + V +++ G
Sbjct: 78  ERILAIIEGELTEVRDQFAVP-----RRTEIADWAGD---LDDEDLIEREDMVVTVTSGG 129

Query: 529 WIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I+          K     LS++  K+ D +     A+T  ++L  +TDG  Y L    L
Sbjct: 130 YIKRTALAEFRSQKRGGKGLSSMQTKDEDVVTALFVANTHTQLLFFTTDGMVYKLKCWRL 189

Query: 581 L--SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632
              +    G+AI  ++ +     I      D         + +  +S G+      S+  
Sbjct: 190 PLAARTARGKAIVNILPIPQGVTIAAIMPVDRPDSEWDELQAVFATSDGDVRRNALSDFT 249

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRL 689
              R GK  +K+     +  V      D V +V  + + + F    +     R   GVR 
Sbjct: 250 NVMRNGKIAMKLPEGVSLVDVKIASEDDDVLLVTNSGRAIRFQTTDVRVFKGRDSTGVRG 309

Query: 690 QSYKDGGISDVI-------------------------CFKICE----------------- 707
              +       +                           +  E                 
Sbjct: 310 IRLQGDDRVVSMDIIKHFEADPAERAAYLKMRRAIEGVLEEAETDEDEVEAGAITQERYA 369

Query: 708 -----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    +        +  +     +  RGG+G        R G  +++
Sbjct: 370 EMSAFENLILTITRSGAGKLSSSHDYPVRGRGGMGVRAMDAAMRGGDLVAA 420



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 55/205 (26%), Gaps = 57/205 (27%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE---IIANTRKGKTFLKVSSEEKM 650
           + L     +V   +      +L+V++ G A   + ++          G   +++  ++++
Sbjct: 259 MKLPEGVSLVDVKIASEDDDVLLVTNSGRAIRFQTTDVRVFKGRDSTGVRGIRLQGDDRV 318

Query: 651 KLV-----------------------------VKVTGDHV-------------------- 661
             +                              +   D V                    
Sbjct: 319 VSMDIIKHFEADPAERAAYLKMRRAIEGVLEEAETDEDEVEAGAITQERYAEMSAFENLI 378

Query: 662 AVVGENRKLLIFSIDQIPEMSRG-KGVRLQS--YKDGGISDVICFKICEGLTWIDSAGRS 718
             +  +    + S    P   RG  GVR      + G +      ++ + +  + S G+S
Sbjct: 379 LTITRSGAGKLSSSHDYPVRGRGGMGVRAMDAAMRGGDLVAAFPVEMDDQVMLVTSTGQS 438

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKG 743
                  +      RG  G  V   
Sbjct: 439 IRVPVKGISFR--SRGAGGVRVFNT 461



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 16/109 (14%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGE 666
              +L ++  G   +    +     R G     + +      +     V   D V +V  
Sbjct: 375 ENLILTITRSGAGKLSSSHDYPVRGRGGMGVRAMDAAMRGGDLVAAFPVEMDDQVMLVTS 434

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + +               V+  S++  G   V  F        +  A
Sbjct: 435 TGQSIRVP------------VKGISFRSRGAGGVRVFNTGTDEHVVSVA 471


>gi|259493813|gb|ACW82747.1| DNA topoisomerase IV subunit A [Vibrio cholerae]
          Length = 83

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 63/83 (75%), Gaps = 1/83 (1%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  
Sbjct: 1   SELGLSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 122 DG-DSAAAYRYTEARMTQVAELI 143
           D   S AA RYTEA++++ AE++
Sbjct: 61  DDPKSFAAMRYTEAKLSKFAEIL 83


>gi|329124305|gb|AEB72030.1| DNA topoisomerase IV subunit C [Aeromonas sp. 34(2011)]
          Length = 82

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 61/82 (74%), Gaps = 1/82 (1%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KP  RRI++AMSE+GL+  + FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY
Sbjct: 1   LKPDQRRIVYAMSELGLNASSKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRY 60

Query: 110 PLISGQGNFGNIDG-DSAAAYR 130
           PL+ GQGN+G  D   S AA R
Sbjct: 61  PLVDGQGNWGAPDDPKSFAAMR 82


>gi|315613996|gb|ADU52598.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 80

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/80 (63%), Positives = 65/80 (81%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGN
Sbjct: 1   LYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGN 60

Query: 118 FGNIDGDSAAAYRYTEARMT 137
           FG++DG +AAA RYTE RM 
Sbjct: 61  FGSVDGLAAAAMRYTEIRMA 80


>gi|321268220|gb|ADW78918.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 89

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 46/89 (51%), Positives = 67/89 (75%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++
Sbjct: 1   DRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKE 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            VDF+  +++   EP V P+K P LL NG
Sbjct: 61  TVDFQLNFDDTLYEPKVMPTKVPTLLING 89


>gi|124108799|gb|ABM90976.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 74

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 49/74 (66%), Positives = 64/74 (86%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDGD 124
           L+ GQGNFG+IDGD
Sbjct: 61  LVDGQGNFGSIDGD 74


>gi|254570861|ref|XP_002492540.1| Essential type II topoisomerase [Pichia pastoris GS115]
 gi|238032338|emb|CAY70361.1| Essential type II topoisomerase [Pichia pastoris GS115]
          Length = 1344

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/402 (16%), Positives = 138/402 (34%), Gaps = 64/402 (15%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                 ++ ++  + +   + +  + ++++    R+IP + DGFKP  R+I++   +  L 
Sbjct: 708  EPGVHLDPDLSIIPISDFINKELILFSMADNI-RSIPSMLDGFKPSQRKILYGCYKRNLR 766

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  +GE     H HGDQS+  S++ LAQ F       L+   G FG+    G
Sbjct: 767  SEIKVSQLAGYIGEHSA-YH-HGDQSLIQSIIGLAQDFVGSNNLNLLQPIGGFGSRAQGG 824

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A+A RY    ++++ +                +                       GI
Sbjct: 825  KDASAARYIFTDLSKITKK--------------NF--------------------SCQGI 850

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T+IP  N  +I      L              + G +                  
Sbjct: 851  GTGWSTNIPPFNPVDIVANIRRL--------------MDGQEMEEMIPWYRGWNG--SIT 894

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRIPLLEDI 301
            ++    FR+       +       I +TEIP +     + E +        K+   ++D+
Sbjct: 895  KISADKFRMEGNIEQIDD----ETIEITEIPAKTWTINMKEFLLNGIAGSEKQKSWIKDM 950

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGI 360
             ++   D++ V+      +   L M        + T    NM          +   ++ I
Sbjct: 951  EEQHGMDLKFVITLTKEEMKKSLQMGLKERFKLITTINVGNMVAFDAAGKIKKYDNVNEI 1010

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
            ++++   R +   RR     + +  ++E +         I E
Sbjct: 1011 IEDYYHVRLDFYQRRKDHLAEVLGNQLEKISSQARFVKMIIE 1052


>gi|237511975|gb|ACQ99700.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 77

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  AA 
Sbjct: 1   RSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAM 60

Query: 130 RYTEARMTQVAELILQG 146
           RYTEAR+T +A  +L+ 
Sbjct: 61  RYTEARLTPLAMEMLRE 77


>gi|329124307|gb|AEB72031.1| DNA topoisomerase IV subunit C [Aeromonas sp. 58(2011)]
          Length = 84

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 48/82 (58%), Positives = 61/82 (74%), Gaps = 1/82 (1%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
             RRII+AMSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+
Sbjct: 3   GQRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDFACYEAMVLMAQPFSYRYPLV 62

Query: 113 SGQGNFGNIDG-DSAAAYRYTE 133
            GQGN+G  D   S AA R+TE
Sbjct: 63  DGQGNWGAPDDPKSFAAMRFTE 84


>gi|330721079|gb|EGG99218.1| DNA gyrase subunit A [gamma proteobacterium IMCC2047]
          Length = 225

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 3/140 (2%)

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
           +  + G                G   + +  ++ +  V    G   + +     K   F+
Sbjct: 1   MAMASGTVKKTSLMNFARPRSSGLIAVDLDGDDTLVNVAVTDGSQDIMLFSNAGKCARFA 60

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + +  M R  +GVR    K+G    +      EG   +  +   Y +           R
Sbjct: 61  EEDVRPMGRTARGVRGIRLKEGERL-ISLIIPQEGGRVLSVSENGYGKRTEMTDFPSHNR 119

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
           GG G +  +   R+G+ + +
Sbjct: 120 GGQGVIAMQTSERNGELVGA 139



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 69/184 (37%), Gaps = 6/184 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +     +   +  S  L A+     D+L        +  I+L S  GK       ++  
Sbjct: 7   TVKKTSLMNFARPRSSGLIAVDLDGDDTLVNVAVTDGSQDIMLFSNAGKCARFAEEDVRP 66

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  ++  I L   + +++  +     ++L VS  G     E ++  ++ R G+  +
Sbjct: 67  MGRTARGVRG-IRLKEGERLISLIIPQEGGRVLSVSENGYGKRTEMTDFPSHNRGGQGVI 125

Query: 643 KVSSEE---KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            + + E   ++   V V  GD + ++ +   L+    D I  +SR  +GV L     G  
Sbjct: 126 AMQTSERNGELVGAVPVYDGDEIMLISDKGTLVRTRTDGISIVSRNTQGVSLIKVSKGER 185

Query: 698 SDVI 701
              +
Sbjct: 186 LVGV 189


>gi|296427790|gb|ADH16507.1| topoisomerase IV subunit A [Shigella flexneri 2a]
          Length = 83

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 47/83 (56%), Positives = 64/83 (77%), Gaps = 1/83 (1%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  
Sbjct: 1   SELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 122 DG-DSAAAYRYTEARMTQVAELI 143
           D   S AA RYTE+R+++ +EL+
Sbjct: 61  DDPKSFAAMRYTESRLSKYSELL 83


>gi|311977868|ref|YP_003986988.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
 gi|76363498|sp|Q5UQE6|TOP2_MIMIV RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|55417096|gb|AAV50746.1| topoisomerase II [Acanthamoeba polyphaga mimivirus]
 gi|308204860|gb|ADO18661.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
          Length = 1263

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 127/303 (41%), Gaps = 33/303 (10%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N  N +  ++ + K +S    + +  + +++  +  R++P+L DGFKP HR++ +   E 
Sbjct: 700 NTYNPDNYLDPSKKRISYYDFIHKELITFSVDDVL-RSVPNLMDGFKPSHRKVFYGSVEK 758

Query: 65  GLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN 120
            +       K + + G V  + K H HGDQS+  ++V +AQ +       L+   G FG+
Sbjct: 759 NIY--KQEIKVSDLTGFVSNMTKYH-HGDQSLSSTIVGMAQNYVGSNNLNLLMPLGMFGS 815

Query: 121 I--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
               G  +A+ RY   ++  +A+ I    D D +  + + +    EPV +    P +L N
Sbjct: 816 RLTGGKDSASPRYLNTKLDDLAKKIFIDYDFDILQHQ-SEDNCRIEPVYYAPIIPMILVN 874

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRE 237
           G  GI  G +T I   N ++I      L+ N      K    ++ G              
Sbjct: 875 GAEGIGTGYSTKIYPCNPRDIIANIKRLLTNENPKTMKPWFRHLTG-------------- 920

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
                 ++    +  RA++ +     G   I +T++P  +        +  LI+      
Sbjct: 921 ---TIEKIDGAKYISRAKYEII----GKDTIHITDLPVGIWTDNYKAFLDNLIVQGTAQN 973

Query: 298 LED 300
            E+
Sbjct: 974 AEE 976


>gi|5712089|gb|AAD47358.1|AF038578_1 gyrase A subunit [Pseudomonas stutzeri]
          Length = 255

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 5/148 (3%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGEN 667
            +   + + ++KG        +       G   L++   + +           V +  + 
Sbjct: 2   PTGAYIFMATAKGTVKKTPLVQFSRPRSSGLIALRLEEGDTLIAAAVTDCAQEVMMFSDG 61

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRSYNRSEND 725
            K++ F   ++  M R  +GVR     +G    +I   I E G   + ++ R Y +    
Sbjct: 62  GKVIRFKESKVRMMGRTARGVRGMRLPEGQR--IISMLIPELGAQILTASVRGYGKRTAM 119

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RGG G +      R+G  + +
Sbjct: 120 EEVPRRGRGGQGVIAMVTNERNGALVGA 147



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 58/158 (36%), Gaps = 7/158 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +++ S  GK        +         ++ +  L   Q I++  + +   ++L  S +
Sbjct: 53  QEVMMFSDGGKVIRFKESKVRMMGRTARGVRGMR-LPEGQRIISMLIPELGAQILTASVR 111

Query: 621 GNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G        E+    R G+  + +     +   +  V  + G+ + ++ +   L+   +D
Sbjct: 112 GYGKRTAMEEVPRRGRGGQGVIAMVTNERNGALVGAVQVLEGEEIMLISDQGTLVRTRVD 171

Query: 677 QIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWI 712
           ++  + R  +GV L    K+  +  +   +       +
Sbjct: 172 EVSSLGRNTQGVTLIKLGKNEHLVGLERVQEPSEEDVL 209


>gi|5456790|gb|AAD43662.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456791|gb|AAD43663.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456793|gb|AAD43665.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456796|gb|AAD43668.1| topoisomerase IV subunit A [Staphylococcus warneri]
          Length = 82

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +L+ ++++ V F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFI 82


>gi|5456801|gb|AAD43673.1| topoisomerase IV subunit A [Staphylococcus lugdunensis]
          Length = 82

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 61/82 (74%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG+ HPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTE
Sbjct: 1   KSAKPVGNVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q+AE +L+ ++++ V F 
Sbjct: 61  AKLSQLAEELLRDINKETVSFV 82


>gi|901985|gb|AAB60062.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 69

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/69 (69%), Positives = 60/69 (86%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RY
Sbjct: 1   YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 60

Query: 132 TEARMTQVA 140
           TE R+ ++A
Sbjct: 61  TEIRLAKIA 69


>gi|5456795|gb|AAD43667.1| topoisomerase IV subunit A [Staphylococcus capitis]
          Length = 82

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +L+ ++++ V F 
Sbjct: 61  AKLSQLSEELLRDINKETVAFI 82


>gi|5456781|gb|AAD43653.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 82

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQFHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +L+ ++++ V F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFV 82


>gi|124108791|gb|ABM90972.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/73 (65%), Positives = 63/73 (86%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDG 123
           L+ GQGNFG+IDG
Sbjct: 61  LVDGQGNFGSIDG 73


>gi|194294671|gb|ACF40330.1| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 79

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/79 (49%), Positives = 57/79 (72%)

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD ++Y ++VR+AQP+  RYPL+ GQGNFG+   D  AA RYTEAR+T +A  +++ +
Sbjct: 1   PHGDIAIYGTMVRMAQPWSMRYPLVDGQGNFGSRGDDGPAAMRYTEARLTPLAMEMVRDI 60

Query: 148 DEDAVDFRDTYNEEDSEPV 166
            E+ VDF+  Y+   +EPV
Sbjct: 61  RENTVDFQPNYDGRTTEPV 79


>gi|237511977|gb|ACQ99701.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 52/72 (72%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 1   SARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 60

Query: 135 RMTQVAELILQG 146
           R+T +A  +L+ 
Sbjct: 61  RLTPLAMEMLRE 72


>gi|8248357|gb|AAF74160.1|AF246741_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248359|gb|AAF74161.1|AF246742_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248361|gb|AAF74162.1|AF246743_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248363|gb|AAF74163.1|AF246744_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248365|gb|AAF74164.1|AF246745_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248369|gb|AAF74166.1|AF246747_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248371|gb|AAF74167.1|AF246748_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248373|gb|AAF74168.1|AF246749_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248375|gb|AAF74169.1|AF246750_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248377|gb|AAF74170.1|AF246751_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248379|gb|AAF74171.1|AF246752_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248381|gb|AAF74172.1|AF246753_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248387|gb|AAF74175.1|AF246756_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248393|gb|AAF74178.1|AF246759_1 DNA gyrase subunit A [Streptococcus sanguinis]
 gi|8248395|gb|AAF74179.1|AF246760_1 DNA gyrase subunit A [Streptococcus sanguinis]
          Length = 76

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 60/76 (78%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 130 RYTEARMTQVAELILQ 145
           RYTEARM+++A  +L+
Sbjct: 61  RYTEARMSKIALEMLR 76


>gi|10281012|dbj|BAB13747.1| type II DNA topoisomerase [Kluyveromyces marxianus]
          Length = 777

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T+++  +  + +   + +  + ++L+    R+IP + DG KP  R++I+A  +  L 
Sbjct: 618 EPGTVLDPKLTEIPISDFINKELILFSLADNI-RSIPSVLDGLKPGQRKVIYACFKRNLK 676

Query: 68  FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                 K A++ G V      H HG+ S+Y ++V LAQ F       L+   G FG    
Sbjct: 677 SE---IKVAQLGGYVSEHTGYH-HGEPSLYQTIVGLAQDFVGSNNIYLLKPNGAFGTRAT 732

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
            G  +AA RY    + ++   I   +D+  + +    +E+  EP  
Sbjct: 733 GGKDSAAPRYIFTELNKITRKIFNSLDDPLLTYIQD-DEQTVEPEW 777


>gi|124108803|gb|ABM90978.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/73 (65%), Positives = 63/73 (86%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDG 123
           L+ GQGNFG+IDG
Sbjct: 61  LVDGQGNFGSIDG 73


>gi|217069493|gb|ACJ83235.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 182

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/177 (45%), Positives = 121/177 (68%), Gaps = 2/177 (1%)

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ + 
Sbjct: 1   LLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDG 60

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            L L+D+ + S+E L+++I GPDFPTGG I+  ++ I+E+YR GRG  ++RA+  + E  
Sbjct: 61  LLYLLDHKDASLEDLMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKIRAKTHI-EKK 118

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  +   V+    R 
Sbjct: 119 SNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKRE 175


>gi|237511973|gb|ACQ99699.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 53/72 (73%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 1   SARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 60

Query: 135 RMTQVAELILQG 146
           R+T +A  +L+ 
Sbjct: 61  RLTPLAMEMLRE 72


>gi|24020908|gb|AAN40849.1| GyrA [Streptococcus salivarius]
          Length = 76

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD
Sbjct: 1   GVTPDKPHKKSARITGDVMGKYHPHGDLSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGD 60

Query: 125 SAAAYRYTEARMTQVA 140
            AAA RYTEARM+++A
Sbjct: 61  GAAAQRYTEARMSKIA 76


>gi|10281020|dbj|BAB13751.1| type II DNA topoisomerase [Candida dubliniensis]
          Length = 782

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  +  + +   + +  + +++S    R+IP + DGFKP  R++++   +  L  
Sbjct: 624 PGTHLDPEITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRS 682

Query: 69  GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                K A++ G V      H HG+QS+  +++ LAQ F       ++   G+FG+    
Sbjct: 683 E---IKVAQLAGYVSENTGYH-HGEQSLVPTIIGLAQNFIGSNNINVLKPNGSFGSRAAG 738

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           G   +A RY    ++++   I   +D+    +    +E+  EP  
Sbjct: 739 GKDFSAARYIFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPEW 782


>gi|5456789|gb|AAD43661.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +++ ++++ V F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|8248385|gb|AAF74174.1|AF246755_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 76

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y ++VR+AQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYGAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 130 RYTEARMTQVAELILQ 145
           RYTEARM+++A  +L+
Sbjct: 61  RYTEARMSKIALEMLR 76


>gi|71042520|pdb|1ZVT|A Chain A, Structure Of The E. Coli Parc C-Terminal Domain
 gi|71042521|pdb|1ZVT|B Chain B, Structure Of The E. Coli Parc C-Terminal Domain
          Length = 256

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 112/243 (46%), Gaps = 11/243 (4%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   ++ + + G++Y + 
Sbjct: 1   SEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID 60

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
              L S RG GE +   + L     +    +     KLL+ S  G  F+   ++++A  R
Sbjct: 61  PITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNR 120

Query: 637 KGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK- 693
            GK  + +     +   V +    D +  + +  ++L+F +  +P++S+GKG ++ +   
Sbjct: 121 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 180

Query: 694 ------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 + G++ +        LT      R       +L    G+RG  G+ + +G  R 
Sbjct: 181 AEAARGEDGLAQLYVLPPQSTLTI-HVGKRKIKLRPEELQKVTGERGRRGT-LMRGLQRI 238

Query: 748 GKF 750
            + 
Sbjct: 239 DRV 241


>gi|169809390|gb|ACA84165.1| GyrA [Veillonella dispar]
          Length = 87

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 58/82 (70%)

Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
          + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 6  MQDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 65

Query: 72 FKKSARIVGEVIGKLHPHGDQS 93
           KKSARI G+V+GK HPHGD S
Sbjct: 66 HKKSARITGDVMGKYHPHGDSS 87


>gi|10281018|dbj|BAB13750.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 18/168 (10%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  +  + +   + +  + +++S    R+IP + DG KP  R++++   +  L  
Sbjct: 624 PGTHLDPEINEIPISDFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLYGCIKKKLKS 682

Query: 69  GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                K A++ G V      H HG+QS+  +++ LAQ F       ++   G+FG+    
Sbjct: 683 E---IKVAQLAGYVSENTGYH-HGEQSLVQTIIGLAQNFVGSNNINILKPNGSFGSRAAG 738

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVV 167
           G   +A RY    + ++   I   +D    D    Y   +E+  EP  
Sbjct: 739 GKDFSAARYIFTELNEITRKIFNPLD----DPLYNYVQDDEQTVEPEW 782


>gi|183987574|gb|ACC65777.1| topoisomerase II [Pleurotus tuber-regium]
          Length = 692

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 12/186 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++ N+  +     + +  + ++++    R+IP + DG KP  R+++    +  L 
Sbjct: 513 KPGTYLDHNMDEIPFSDFINKELILFSMADNI-RSIPSVADGLKPGQRKVVWGCFKRKL- 570

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
                 K A++VG +      H HG+ S+  +++ LAQ +       L+   G +G  D 
Sbjct: 571 --KKEIKVAQLVGYISEHAAYH-HGEASLAATIINLAQNYVGSNNINLLKPNGQYGTRDQ 627

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  +I     +  +  R T +    EP  +    P +L NG  
Sbjct: 628 GGKDHASPRYIYTEVMPLTRMICHPAGDPLLK-RQTDDNLLVEPEWYMPVVPLVLVNGAE 686

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 687 GIGTGW 692


>gi|24020910|gb|AAN40850.1| GyrA [Streptococcus mitis]
          Length = 76

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD
Sbjct: 1   GVTPDKPHKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGD 60

Query: 125 SAAAYRYTEARMTQVA 140
            AAA RYTEARM+++A
Sbjct: 61  GAAAQRYTEARMSKIA 76


>gi|46191316|ref|ZP_00206762.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bifidobacterium longum DJO10A]
          Length = 720

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 133/613 (21%), Positives = 241/613 (39%), Gaps = 59/613 (9%)

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++ +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  G
Sbjct: 1   MATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATG 59

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG    RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D + 
Sbjct: 60  RGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTD 119

Query: 307 -EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++       DP  ++  +F  + ++  F +N   L     P  M L  +L+ W+
Sbjct: 120 RHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALV-EGRPHTMGLKEMLQVWV 178

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFS 422
            HRR V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR  D        ++  F 
Sbjct: 179 DHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFD 238

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q   IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E 
Sbjct: 239 LDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEA 298

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RRT   +       T   A        V  S    +++  + S   + 
Sbjct: 299 VAKWGSP-----RRTVLLDADPDGTLTPVVAQGA-GASGVSKSALEAVKAATTISSAEAD 352

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYT----LPAGNLLSGRGHGEAIQLLIDLNH 598
           +      + K    +  T  + +             L A    S      A     +   
Sbjct: 353 VAAAAAAAKKTGEQSTLTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSTSDERLR 412

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVV- 654
           +  I T F   +     +V+S G   +    ++ A        L +      +++  +  
Sbjct: 413 DDQITTIFETSTRATYGLVTSAGRLVLAHVVDLPALPAT--ATLSLKGGVQADELIGMTE 470

Query: 655 ---KVTGDHVAVVG-----ENRKLLIFSIDQ---------IPEMSRGK--GVR------- 688
               + G+ V          + K       +         +P ++ G   GV        
Sbjct: 471 STDPIRGERVITAIAMEQPTSGKTSAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREA 530

Query: 689 --------LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                   +   KDG           +      S+  S   +          R   G   
Sbjct: 531 PTTMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSL-LTFEAKNVRPQGRTAGGMAG 589

Query: 741 PKGFPRSGKFLSS 753
            K     G  +++
Sbjct: 590 IKLAE--GARVAA 600



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 12/168 (7%), Positives = 33/168 (19%), Gaps = 30/168 (17%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLI 672
           L + +  G             T      + +   +++        D  +  +  +  LL 
Sbjct: 514 LAIGTRNGVIKRWNRE--APTTMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLT 571

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGIS--------------------------DVICFKI 705
           F    +    R   G+      +G                               +   +
Sbjct: 572 FEAKNVRPQGRTAGGMAGIKLAEGARVAAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTV 631

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +        +     +     R   G    +        + +
Sbjct: 632 AGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTLILA 679


>gi|6094496|sp|O24308|TOP2_PEA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
            II; AltName: Full=PsTopII
 gi|2330651|emb|CAA74891.1| topoisomerase II [Pisum sativum]
          Length = 1462

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 63/387 (16%), Positives = 136/387 (35%), Gaps = 48/387 (12%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T  +   K ++ +  + +  + ++      RA     D         +    +  L 
Sbjct: 656  EPGTCRDHEAKLINYKDFVNKELILFS------RA-----D---------LFGSFKKKLY 695

Query: 68   FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NI 121
                  K A+ +G V      H HG+QS+  +++ +AQ F       L+   G FG  N+
Sbjct: 696  ---KEIKVAQFIGYVSEHSAYH-HGEQSLASTIIGMAQDFVGSNNINLLKPNGQFGTCNL 751

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY    ++ V   +    D+  +++    + +  EP  +    P +L NG+ 
Sbjct: 752  GGKDHASARYIYTELSPVTRCLFHEHDDKLLEY-LNEDGKSIEPNWYMPIIPLVLVNGSE 810

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++ IP++N +EI      L++  E+                     +     +E
Sbjct: 811  GIGTGWSSYIPNYNPREIIANVRRLLNGEELVPMDP--------------WYKGFRGTIE 856

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                  G         ++E       + + +        + +E I +     + PL+ED 
Sbjct: 857  KSAKEGGYIVNGTVTEIDEQTFRITELPIRKWTQDY--KQFLESITDGAPNVKDPLIEDF 914

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV-LSMGRVPQVMPLDGI 360
            R    + +  +           +L E +F    + +    +           +    + I
Sbjct: 915  RQNGDDAIVDIEIKMKPEKIATILQEGLFKKFKLTSTISTSNMHLFDAEGNKKFDTPEQI 974

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRV 387
            L+E+   R +   +   + +  ++R +
Sbjct: 975  LEEFFPLRLDYYEKSKEYILGNLNRLL 1001


>gi|237511971|gb|ACQ99698.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 53/72 (73%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+Y++LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 1   SARSVAETMGNYHPHGDASIYNTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 60

Query: 135 RMTQVAELILQG 146
           R+T +A  +L+ 
Sbjct: 61  RLTPLAMEMLRE 72


>gi|10281016|dbj|BAB13749.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 18/168 (10%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  +  + +   + +  + +++S    R+IP + DG KP  R++++   +  L  
Sbjct: 624 PGTHLDPEINEIPISDFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLYGCIKKKLKS 682

Query: 69  GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                K A++ G V      H HG+QS+  +++ LAQ F       ++   G+FG+    
Sbjct: 683 E---IKVAQLAGYVSENTGYH-HGEQSLVQTIIGLAQNFVGSNNINILKPNGSFGSRAAG 738

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVV 167
           G   +A RY    + ++   I   +D    D    Y   +E+  EP  
Sbjct: 739 GKDFSAARYIFTELNEITRKIFNPLD----DPLYNYVQDDEQTVEPEW 782


>gi|161339333|gb|ABX64407.1| DNA topoisomerase IV [Streptococcus suis]
 gi|164612282|gb|ABY63610.1| topoisomerase IV [Streptococcus suis]
 gi|164612284|gb|ABY63611.1| topoisomerase IV [Streptococcus suis]
          Length = 84

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 61/84 (72%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYT
Sbjct: 1   RKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRD 156
           EAR++Q++  +L+ +D++ VDF  
Sbjct: 61  EARLSQLSGELLKDIDKNTVDFVW 84


>gi|295092032|emb|CBK78139.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Clostridium cf. saccharolyticum K10]
          Length = 504

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 99/517 (19%), Positives = 196/517 (37%), Gaps = 49/517 (9%)

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
             + +       +V+TEIPY +     ++ +  IAEL+ +K++  + DI ++S ++   +
Sbjct: 3   VELGKRKADKDKLVITEIPYTMIGAGINKCLMDIAELVESKKLTDVVDISNQSNKEGIRI 62

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + +   ++  + +E  + +NM  +     P+ + L GILK +L  + E  
Sbjct: 63  VLELRKDADVEKIRNILYKKTKLEDTYGVNMLAIVK-GRPETLNLRGILKNYLDFQYENN 121

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            R+    ++    + EI +GL+ A   ID IIA++R     K                  
Sbjct: 122 TRKYRVLLEKELEKKEIQEGLIRACDVIDLIIAVLRGSRNLKDAKACLINGDTSAIRFKT 181

Query: 420 --------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                   +   TE Q  AIL +RL  L  LE   ++ E    L + ++ + +L+     
Sbjct: 182 PELEKDAGKLRFTEKQASAILEMRLYKLIGLEILALEKEHRETLRKIKEYEKILSDKGTM 241

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I  ++  +K  F+       RRT   +     +    ++ +E   +  V+   G+ R
Sbjct: 242 DQVIKEDLAAIKREFAYP-----RRTLIED---GKEVVYDESAVEVREVVFVMDRFGYSR 293

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--A 589
            +   + D         +     +    TDRI L +  G  + +   ++  G+   +   
Sbjct: 294 IVDRSTYDR--NRETIENENTHVICCLNTDRICLFTDAGVLHQVKVTDIPLGKLRDKGTP 351

Query: 590 IQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           I  L   +  ++  T FV ++        L  +       V   E   N R      K+ 
Sbjct: 352 IDNLCKFDGTKEQ-TVFVTNASSLQGKLFLFATRDAMLKRVPGEEFETNNR-MVAATKLQ 409

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             + +  V        V +  +N   L F++D+I    +  +GVR      G   + +  
Sbjct: 410 EGDSLVSVQPADEASEVVLQTDNGVFLRFAMDEISVQKKNARGVRGIKLGRGEALEQVYL 469

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                 + I        +  +      G+R G G+ V
Sbjct: 470 LGANTESVITYKE----KQVHLNRLKQGRRDGKGNKV 502


>gi|1515475|gb|AAB06960.1| gyrase A [Enterococcus faecalis]
          Length = 73

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DG
Sbjct: 1   LGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDG 60

Query: 124 DSAAAYRYTEARM 136
           D AAA RYTEARM
Sbjct: 61  DGAAAMRYTEARM 73


>gi|213618678|ref|ZP_03372504.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 275

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 119/251 (47%), Gaps = 11/251 (4%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
             +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   ++ + T
Sbjct: 12  MSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDT 71

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            G++Y +    L S RG GE +   + L     +    +     KLL+ S  G  F+   
Sbjct: 72  TGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTF 131

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSRGKG 686
           ++++A  R GKT + +     +   + +  +H  +  + +  ++L+F +D +P++S+GKG
Sbjct: 132 NDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKG 191

Query: 687 VRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            ++ +         D G++ +        LT      R       +L   +G+RG  G+ 
Sbjct: 192 NKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIKLRPEELQKVVGERGRRGT- 249

Query: 740 VPKGFPRSGKF 750
           + +G  R  + 
Sbjct: 250 LMRGLQRIDRI 260


>gi|49425335|gb|AAT66028.1| gyrase subunit A [Corynebacterium amycolatum]
 gi|49425339|gb|AAT66030.1| gyrase subunit A [Corynebacterium glutamicum]
          Length = 70

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/70 (62%), Positives = 58/70 (82%)

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARM
Sbjct: 1   RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 60

Query: 137 TQVAELILQG 146
           T++   +L+ 
Sbjct: 61  TKITLELLRD 70


>gi|153830649|ref|ZP_01983316.1| topoisomerase IV, subunit A [Vibrio cholerae 623-39]
 gi|148873858|gb|EDL71993.1| topoisomerase IV, subunit A [Vibrio cholerae 623-39]
          Length = 254

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 109/234 (46%), Gaps = 9/234 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+S +GWIR  K H VD  +L++K GD+        +  + + L +DG++Y+L +  L S
Sbjct: 1   VLSEKGWIRHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPS 60

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            RG GE I   +++     I    + +     LV S  G  F+ +  ++++  R GK  +
Sbjct: 61  ARGQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALI 120

Query: 643 KVSSEEKMKLVVKV---TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG---- 695
            +    ++     +     D +  +    ++L+F I  +P++S+GKG ++ +        
Sbjct: 121 NLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKT 180

Query: 696 -GISDVICFKICEGLTW-IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                     + +G +  + +  R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 181 REEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERGRRGALLPRGLQRV 234


>gi|4691547|gb|AAD27958.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 77

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/77 (57%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ 
Sbjct: 1   SELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSP 60

Query: 122 DG-DSAAAYRYTEARMT 137
           D   S AA RYTEA+++
Sbjct: 61  DDPKSFAAMRYTEAKLS 77


>gi|217069469|gb|ACJ83223.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 183

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/177 (46%), Positives = 121/177 (68%), Gaps = 2/177 (1%)

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ + 
Sbjct: 1   LLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDG 60

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            L LIDN E S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VRA+  + E  
Sbjct: 61  LLYLIDNKESSLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVRAKTHI-EKR 118

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+    R 
Sbjct: 119 ANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRD 175


>gi|109287964|ref|YP_654658.1| hypothetical protein MIV086L [Invertebrate iridescent virus 3]
 gi|123862744|sp|Q196X4|TOP2_IIV3 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|106073587|gb|ABF82116.1| hypothetical protein MIV086L [Aedes taeniorhynchus iridescent virus]
          Length = 1113

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 83/477 (17%), Positives = 173/477 (36%), Gaps = 46/477 (9%)

Query: 15   ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            E V  + +   +    + ++      R++    DGFK   R+II+A+ +        F K
Sbjct: 669  EAVIDLKISDFMHHEMIKFS-YEDCRRSLASCIDGFKESQRKIIYAVRKKFRSNSTEFIK 727

Query: 75   SARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAA 128
             A++ G V  +     HG+Q++ +++V+ AQ F       L+   G FG     G  +AA
Sbjct: 728  VAQLSGYVAEQTDY-KHGEQNLCETIVKFAQDFVGANNVQLLEPDGQFGTRLEGGKDSAA 786

Query: 129  YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
             RY   +  ++   I +  D+  ++        + EPV F    P +L NG+ GI  G +
Sbjct: 787  PRYIYTKPHKILPYIFREEDDPILEQS-----SEGEPVHFVPIIPLVLVNGSVGIGTGWS 841

Query: 189  TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
              +P +N  E+     A + + +               P        R    +    G G
Sbjct: 842  CFVPQYNPLELIRYIEARLTSQDSE----------ALLPAKPWY---RNFTGKVAATGPG 888

Query: 249  GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             F    R    +       + VTE+P  +   R  ++   LI + ++  L +    S  D
Sbjct: 889  KFTTFGRMKQVDADT----VRVTELPVGMWTDRFKDQCYSLIESGQLQQLVNESTVSKVD 944

Query: 309  VRI-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
              +  L   +       L  +  +L D E        +  +               +   
Sbjct: 945  FTLKKLQDISALKLTTTLHTTNMVLFDRENVITKYDTIGDIL-----DHYFQTRLAFYKV 999

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
            R+     +    +Q  + +++ ++ +L  +  + +      +      +    F   +N 
Sbjct: 1000 RKNHTIAQLKNTIQHNETKLKFIEKVLTDHSFLRQ-----DDAAIVSILEKENFLKVDNS 1054

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             + +LN+ +RS       +++S +  L     ++                E++++K+
Sbjct: 1055 YNYLLNISIRSCTATAVEKLQSTIKGLTESLIRVQQTPT-----RQMWYDELQQLKQ 1106


>gi|3152674|gb|AAC17115.1| topoisomerase IV subunit A [Shigella flexneri]
          Length = 79

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 58/79 (73%), Gaps = 1/79 (1%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAY 129
            FKKSAR VG+V+GK HPHGD + Y+ +V +AQPF  RYPL+ GQGN+G  D   S AA 
Sbjct: 1   KFKKSARTVGDVLGKYHPHGDSACYEPMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 60

Query: 130 RYTEARMTQVAELILQGVD 148
           RYTE+R+++ +EL+L  + 
Sbjct: 61  RYTESRLSKYSELLLSELG 79


>gi|124108793|gb|ABM90973.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/71 (63%), Positives = 60/71 (84%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNI 121
           L+ GQGNFG+ 
Sbjct: 61  LVDGQGNFGSR 71


>gi|8248367|gb|AAF74165.1|AF246746_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 76

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 60/76 (78%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 130 RYTEARMTQVAELILQ 145
           RYTEARM+++A  +L+
Sbjct: 61  RYTEARMSKIALEMLR 76


>gi|5456802|gb|AAD43674.1| topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 82

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 63/82 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +   + LI  QGN G+ID D AAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQGWKLCHVLIEMQGNNGSIDNDPAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A++++++E +L+ ++++ V F 
Sbjct: 61  AKLSRISEELLRDINKETVPFM 82


>gi|146743236|gb|ABQ42863.1| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 88

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 59/87 (67%)

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           +Y +LVRLAQ +  RYPL+ GQGNFG+   D  AA RYTE RMT +A  +++ + E+ VD
Sbjct: 1   IYATLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRMTPLAMEMVRDIRENTVD 60

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGT 180
           F   Y+ +  EP + PS+ PNLL NG+
Sbjct: 61  FSPNYDGKTQEPDILPSRVPNLLMNGS 87


>gi|24020912|gb|AAN40851.1| GyrA [Streptococcus mitis]
          Length = 74

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/74 (56%), Positives = 57/74 (77%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD 
Sbjct: 1   VTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDG 60

Query: 126 AAAYRYTEARMTQV 139
           AAA RYTEARM+++
Sbjct: 61  AAAQRYTEARMSKI 74


>gi|164612286|gb|ABY63612.1| topoisomerase IV [Streptococcus suis]
          Length = 84

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 60/84 (71%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYT
Sbjct: 1   RKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRD 156
           EAR++Q++  +L+ +D+  VDF  
Sbjct: 61  EARLSQLSGELLKDIDKSTVDFVW 84


>gi|5456786|gb|AAD43658.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDLSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +++ ++++ V F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|24020904|gb|AAN40847.1| GyrA [Streptococcus mitis]
          Length = 75

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/75 (57%), Positives = 57/75 (76%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+      KKSARI G+V+GK HPHGD S+Y ++VR+AQ +  RY L+ G GNFG++DGD
Sbjct: 1   GVTPDKPHKKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRYMLVDGHGNFGSMDGD 60

Query: 125 SAAAYRYTEARMTQV 139
            AAA RYTEARM+++
Sbjct: 61  GAAAQRYTEARMSKI 75


>gi|8248383|gb|AAF74173.1|AF246754_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248389|gb|AAF74176.1|AF246757_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248391|gb|AAF74177.1|AF246758_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 76

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 60/76 (78%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 130 RYTEARMTQVAELILQ 145
           RYTEARM+++A  +L+
Sbjct: 61  RYTEARMSKIALEMLR 76


>gi|10281022|dbj|BAB13752.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 12/165 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               ++  +  + +   + +  + +++S    R+IP + DG KP  R+++    +  L  
Sbjct: 621 PGNQLDPELNEIPISEFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLFGCFKRNLKS 679

Query: 69  GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                K A++   V      H HG+ S+  +++ LAQ F       ++   G FG+    
Sbjct: 680 E---IKVAQLAAYVSENTGYH-HGEVSLVQTIIGLAQNFVGSNNINILKPNGAFGSRATG 735

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           G  AAA RY    +  + + I   +D     +    +E+  EP  
Sbjct: 736 GKDAAAARYIFTELNDITKAIFNPLDNPIYSYVQD-DEQTVEPQW 779


>gi|289677155|ref|ZP_06498045.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 82

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/78 (52%), Positives = 57/78 (73%)

Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
          + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +
Sbjct: 4  LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPY 63

Query: 73 KKSARIVGEVIGKLHPHG 90
          KKSAR+VG+VIGK HP G
Sbjct: 64 KKSARVVGDVIGKYHPPG 81


>gi|207108362|ref|ZP_03242524.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 220

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 4/149 (2%)

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD--HVAVV 664
           +     L   +  G       SE  +N    G   + +   +++     V  +  H+ + 
Sbjct: 1   FSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELVSAKVVDKNAKHLLIA 60

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
                 + F ++ + EM R  +GV                   +G   +  +     +  
Sbjct: 61  SHLGIFIKFPLEDVREMGRNARGVIGIKLNKNDFVVGAVVISDDGNKLLSVSENGLGKQT 120

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                    RGG G +  +   ++G  +S
Sbjct: 121 LAEAYRGQSRGGKGIIGMRLTQKTGNLVS 149



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G     P  ++     +   +  +    ++  +    + D   KLL VS  G
Sbjct: 56  HLLIASHLGIFIKFPLEDVREMGRNARGVIGIKLNKNDFVVGAVVISDDGNKLLSVSENG 115

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSID 676
                        +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI 
Sbjct: 116 LGKQTLAEAYRGQSRGGKGIIGMRLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIK 175

Query: 677 QIPEMSR-GKGVRLQSYKD 694
            I E  R   GV+L +  D
Sbjct: 176 DIRETGRNASGVKLINTAD 194


>gi|5456780|gb|AAD43652.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 82

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN GNID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQFHPHGDFSVYDAMVRLSQDWKLRHVLIEMHGNNGNIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +L+ ++++ V F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFV 82


>gi|157311570|ref|YP_001469613.1| DNA topisomerase II medium subunit [Enterobacteria phage Phi1]
 gi|149380774|gb|ABR24779.1| gp52 topoisomerase II medium subunit [Enterobacteria phage Phi1]
          Length = 448

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 173/477 (36%), Gaps = 52/477 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V   SL   +      YA+ + +ER IP L DG KPV R ++    +        F
Sbjct: 1   MNKSVTYRSLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKF 60

Query: 73  KKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           +K A I   V  +G  H HG+ +  ++   +A  +    PL+ GQGNFG+     A A R
Sbjct: 61  RKMADIGSGVAELG-YH-HGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAAR 118

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP--VVFPSKFPNLLANGTSGIAVGMA 188
           Y  AR+ +    I + ++         + + +  P     P   P +LANG SGIA G  
Sbjct: 119 YIFARVHENFFKIYKDMNC-----APKHEDLEHIPPAFYLPV-VPMVLANGISGIATGYK 172

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T I  H+++ +                +  E  +         +   + +     R  R 
Sbjct: 173 TDILPHSLESLI---------------ECTELALAGKLDKEPSVQFPKFTGKVIPRDDRD 217

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           G  +   + +     G   + ++E+PY+  +   +  +  L       L+    D  ++D
Sbjct: 218 GVILEGTYELN----GKTTLTISEVPYKFDREEYVAVLDALEEKD---LIVSYNDRCSKD 270

Query: 309 VRIVLFPKNRSL----DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM--------P 356
                    R      D     E I     +      N+ V++   + +V          
Sbjct: 271 GFRFEVTLKRDYFKSEDESARHEKIMKDFKLTQLVAQNIVVVNERGLVEVFEKASDLIRR 330

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
              I   ++  R E++   +         + E +  ++       EI    + + +    
Sbjct: 331 FVEIRLGYVDKRIELMQAETLEAYNYAMAKAEFIDRVIK-----GEIELQGKKKAEVMQS 385

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +     L     D ++++ L S+ + E  ++  + +   +E E         + + +
Sbjct: 386 INGHEKLRPY-ADKLVSMPLYSVTQEEYDRLVKDAEKHHSEYEYWTKTTAMKEYKKD 441


>gi|12642572|gb|AAK00289.1|AF302141_1 ParC [Stenotrophomonas maltophilia]
          Length = 77

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 1/77 (1%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYT
Sbjct: 1   KSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYT 60

Query: 133 EARMTQVAELILQGVDE 149
           E+++T +AE++L  + +
Sbjct: 61  ESKLTPIAEVLLGELGQ 77


>gi|4928201|gb|AAD33461.1|AF129762_1 gyrase subunit A [Streptococcus mitis]
          Length = 74

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 60/74 (81%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 1   HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 60

Query: 132 TEARMTQVAELILQ 145
           TEARM+++A  +L+
Sbjct: 61  TEARMSKIALEMLR 74


>gi|313600330|gb|ADR71661.1| topoisomerase IV subunit [Salmonella sp. ES-B43]
          Length = 83

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 63/83 (75%), Gaps = 1/83 (1%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL+  A FKKSAR VG+V+GK HP GD + Y+++V +AQPF  RYPL+ GQGN+G  
Sbjct: 1   SELGLNASAKFKKSARTVGDVLGKYHPRGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 122 DG-DSAAAYRYTEARMTQVAELI 143
           D   S AA RYTE+R+++ +EL+
Sbjct: 61  DDPKSFAAMRYTESRLSKYSELL 83


>gi|5456783|gb|AAD43655.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456784|gb|AAD43656.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456785|gb|AAD43657.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 61/82 (74%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDLSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +++ ++++ V F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|5456797|gb|AAD43669.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 82

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +++ ++++ V F 
Sbjct: 61  AKLSQLSEELVRDINKETVSFI 82


>gi|10281024|dbj|BAB13753.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 12/165 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               ++  +  + +   + +  + +++S    R+IP + DG KP  R+++    +  L  
Sbjct: 621 PGNQLDPALNEIPISEFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLFGCFKRNLKS 679

Query: 69  GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                K A++   V      H HG+ S+  +++ LAQ F       ++   G FG+    
Sbjct: 680 E---IKVAQLAAYVSENTGYH-HGEVSLVQTIIGLAQNFVGSNNINILKPNGAFGSRATG 735

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           G  AAA RY    +  + + I   +D     +    +E+  EP  
Sbjct: 736 GKDAAAARYIFTELNDITKAIFNPLDNPIYTYVQD-DEQTVEPQW 779


>gi|46019110|emb|CAE52019.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 159

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 82/160 (51%), Positives = 115/160 (71%), Gaps = 1/160 (0%)

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           L+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  
Sbjct: 1   LRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGV 60

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   
Sbjct: 61  LAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSS 119

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RD
Sbjct: 120 GKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRD 159


>gi|268574422|ref|XP_002642188.1| Hypothetical protein CBG18156 [Caenorhabditis briggsae]
          Length = 1206

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 90/538 (16%), Positives = 176/538 (32%), Gaps = 97/538 (18%)

Query: 19   AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             VS    +E+  L Y      E +IP L DG KP  R+I+  + +M         K +++
Sbjct: 687  EVSTTEDVEKTELNY------EESIPSLIDGLKPSQRKILWTLLKM---DETTEMKVSQL 737

Query: 79   VGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYT 132
             G V  +   H HG++S+  ++VR+ Q F      PL+   G FG     G+ AA+ RY 
Sbjct: 738  AGAVAHRQSYH-HGEESLVRTIVRMGQTFCGASNMPLLQPIGQFGTRHEGGNDAASARYI 796

Query: 133  EARMT---------------------------------------------------QVAE 141
               +                                                        
Sbjct: 797  FTSLAYVDIQKTKQFREKRQMPFDSASQKTYMSPESSTSQGGVMTFPGWCYDIMTRPTTR 856

Query: 142  LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            L+    D+D ++ +        EP       P +L NGT GI  G +T + + N  ++ +
Sbjct: 857  LLFPIADDDLLE-KKVEEGITVEPNTLCPIIPLILVNGTEGIGTGWSTKVANRNPVDVID 915

Query: 202  AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
                 ID   + + ++  +    D+     IV   + I           R  A       
Sbjct: 916  MIRRKIDLSSLVVNEIPPFY--EDYKGKIEIVTPTKFISTGKIKISRPERKNAST----- 968

Query: 262  GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
                + + ++E+P  V  S+  EK++ ++    I    +   E   + R++   K  +  
Sbjct: 969  ----FSVEISELPIGVWTSKYKEKLSNILEKLPITEFSERHTEKQVNFRLIFDRKKAARF 1024

Query: 322  PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP--------LDGILKEWLAHRREVLF 373
                   +     + T    N  +       +              I K+    R E+  
Sbjct: 1025 LQKSNSDLLNYFKLRTSITENRVLFDRNGQLKEFGNVSEIANEFFEIRKDLYQKRLEIQK 1084

Query: 374  RRSSFRMQAIDRRVEILKGL----LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
            R    +++ ++ ++  ++ +            E + +   E   +   +   +  ++   
Sbjct: 1085 RECEAKLKYVNNQMNFIELVTNGTFELKSMDRESLELKLEEIGFEVDSMKTENSKKSNYG 1144

Query: 430  AILNLRLRSLRKLEEY-----QIKSELDNLLAEKEKIDSLLNSG-KQQWNQIACEIRE 481
             +L + L  L   E       + +  L+   AE     S  +S   +    I    +E
Sbjct: 1145 YLLEMPLSRLTLDEMNRLKERKSRRNLELKAAESADWKSTWHSELDKLEESIKKTRKE 1202


>gi|49425331|gb|AAT66026.1| gyrase subunit A [Corynebacterium jeikeium]
          Length = 70

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 58/70 (82%)

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RI+G+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARM
Sbjct: 1   RIIGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 60

Query: 137 TQVAELILQG 146
           T++   +L+ 
Sbjct: 61  TKITLELLRD 70


>gi|11359849|gb|AAG34730.1| topoisomerase IV subunit A [Enterobacter cloacae]
          Length = 90

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 42/90 (46%), Positives = 61/90 (67%), Gaps = 1/90 (1%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKS R VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+   D   S   
Sbjct: 1   AKFKKSDRTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWRAPDDPKSFVV 60

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTY 158
            RYTE+R+++ AE++L  + +  VD+   +
Sbjct: 61  IRYTESRLSKYAEVLLGELGQVTVDWVPNF 90


>gi|260363423|ref|ZP_05776273.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus K5030]
 gi|308111420|gb|EFO48960.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus K5030]
          Length = 270

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 118/244 (48%), Gaps = 9/244 (3%)

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             EPITVV+S +GW+R  K H VD  +L++K GD         ++   + L +DG++Y+L
Sbjct: 10  PSEPITVVLSEKGWVRHAKGHDVDAESLNYKSGDKYLAHARGKSSQPAVFLGSDGRSYSL 69

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            + +L S R  GE I   +++     I    + +     LV S  G  F+ + +++++  
Sbjct: 70  ESHSLPSARSQGEPITGRLNITAGSSIRQVIMSEEDQLWLVGSDAGYGFVCKGADLLSKN 129

Query: 636 RKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY 692
           R GK  + + +  ++    +V     D +  +    ++L+F I  +P++++GKG ++ + 
Sbjct: 130 RSGKALVTLPANSEVMTPKEVGDLDSDEILAITNQGRMLLFPIKDLPQLAKGKGNKIINI 189

Query: 693 -----KDGGISDVICFKICEGLTW-IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                K+          + +G +  + +  R       DL  + G+RG  GSL+P+G  R
Sbjct: 190 PAAKAKEREEVLSHLIALPQGASLTLYAGKRKLGLKPADLENFRGERGRRGSLLPRGLQR 249

Query: 747 SGKF 750
             + 
Sbjct: 250 VTRI 253


>gi|9081887|gb|AAF82626.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 80

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 57/80 (71%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI++AM   G  F   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   
Sbjct: 1   RILYAMYSSGNTFDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEAR 135
           GN G+ID D  AA RYTEA+
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|5456787|gb|AAD43659.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456788|gb|AAD43660.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 61/82 (74%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYYAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +++ ++++ V F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|217069467|gb|ACJ83222.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 186

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 82/185 (44%), Positives = 125/185 (67%), Gaps = 2/185 (1%)

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L
Sbjct: 1   IDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYL 60

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           IDN E S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VRA+  + E      
Sbjct: 61  IDNKESSLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVRAKTHI-EKRANKD 118

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+    R    ++++
Sbjct: 119 IIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDAMSEIVL 178

Query: 327 ESIFM 331
            ++F 
Sbjct: 179 NNLFK 183


>gi|33620672|ref|NP_891840.1| topoisomerase medium subunit [Enterobacteria phage RB49]
 gi|33438555|gb|AAL15130.2| topoisomerase medium subunit [Enterobacteria phage RB49]
          Length = 454

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 88/482 (18%), Positives = 172/482 (35%), Gaps = 52/482 (10%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +  + +       SL   +      YA+ + +ER IP L DG KPV R ++    +    
Sbjct: 2   DKISQIVNTFTYRSLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKG 61

Query: 68  FGAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
               F+K A I   V  +G  H HG+ +  ++   +A  +    PL+ GQGNFG+     
Sbjct: 62  DRKKFRKMADIGSGVAELG-YH-HGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQK 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP--VVFPSKFPNLLANGTSGI 183
           A A RY  AR+ +    I + ++         + + +  P     P   P +LANG SGI
Sbjct: 120 AGAARYIFARVHENFFKIYKDMNC-----APKHEDLEHIPPAFYLPV-VPMVLANGISGI 173

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           A G  T I  H+++ +                +  E  +         +   + +     
Sbjct: 174 ATGYKTDILPHSLESLI---------------ECTELALAGKLDKEPSVQFPKFTGKVIP 218

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R  R G  +   + +     G   + ++E+PY+  +   +  +  L       L+    D
Sbjct: 219 RDDRDGVILEGTYELN----GKTKLTISEVPYKFDREEYVAVLDALEEKD---LIVSYND 271

Query: 304 ESAEDVRIVLFPKNRSL----DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM---- 355
             ++D         R      D     E I     +      N+ V++   + +V     
Sbjct: 272 RCSKDGFRFEVTLKRDYFKSEDESARHEQIMKDFKLTQLVAQNIVVVNERGLVEVFEKAS 331

Query: 356 ----PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
                   I   ++  R E++   +         + E +  ++       EI    + + 
Sbjct: 332 DLIRRFVEIRLGYVDKRIELMQAETLEAYNYAMAKAEFIDRVIK-----GEIELQGKKKS 386

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +    +     L     D ++++ L S+ + E  ++  + D   +E E         + +
Sbjct: 387 EVMQSINGHEKLRPY-ADKLVSMPLYSVTQEEYDRLVKDADKHHSEYEYWTKTTAMKEYK 445

Query: 472 WN 473
            +
Sbjct: 446 KD 447


>gi|238695150|ref|YP_002922344.1| topoisomerase medium subunit [Enterobacteria phage JSE]
 gi|220029286|gb|ACL78221.1| topoisomerase medium subunit [Enterobacteria phage JSE]
          Length = 454

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 88/482 (18%), Positives = 172/482 (35%), Gaps = 52/482 (10%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +  + +       SL   +      YA+ + +ER IP L DG KPV R ++    +    
Sbjct: 2   DKISQIVNTFTYRSLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKG 61

Query: 68  FGAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
               F+K A I   V  +G  H HG+ +  ++   +A  +    PL+ GQGNFG+     
Sbjct: 62  DRKKFRKMADIGSGVAELG-YH-HGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQK 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP--VVFPSKFPNLLANGTSGI 183
           A A RY  AR+ +    I + ++         + + +  P     P   P +LANG SGI
Sbjct: 120 AGAARYIFARVHENFFKIYKDMNC-----APKHEDLEHIPPAFYLPV-VPMVLANGISGI 173

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           A G  T I  H+++ +                +  E  +         +   + +     
Sbjct: 174 ATGYKTDILPHSLESLI---------------ECTELALAGKLDKEPSVQFPKFTGKVIP 218

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R  R G  +   + +     G   + ++E+PY+  +   +  +  L       L+    D
Sbjct: 219 RDDRDGVILEGTYELN----GKTKLTISEVPYKFDREEYVAVLDALEEKD---LIVSYND 271

Query: 304 ESAEDVRIVLFPKNRSL----DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM---- 355
             ++D         R      D     E I     +      N+ V++   + +V     
Sbjct: 272 RCSKDGFRFEVTLKRDYFKSEDESARHEQIMKDFKLTQLVAQNIVVVNERGLVEVFEKAS 331

Query: 356 ----PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
                   I   ++  R E++   +         + E +  ++       EI    + + 
Sbjct: 332 DLIRRFVEIRLGYVDKRIELMQAETLEAYNYAMAKAEFIDRVIK-----GEIELQGKKKA 386

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +    +     L     D ++++ L S+ + E  ++  + D   +E E         + +
Sbjct: 387 EVMQSINGHEKLRPY-ADKLVSMPLYSVTQEEYDRLVKDADKHHSEYEYWTKTTAMKEYK 445

Query: 472 WN 473
            +
Sbjct: 446 KD 447


>gi|328957565|ref|YP_004374951.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
 gi|328673889|gb|AEB29935.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
          Length = 470

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/409 (19%), Positives = 170/409 (41%), Gaps = 27/409 (6%)

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PV 416
           +++ +L H+REVL RR+++ ++  + R  I+ GL+ A   +D++I  IR+    K     
Sbjct: 1   MIEAYLEHKREVLTRRTNYNLRKAESRQHIVSGLIKALSILDQVIDAIRSSKDKKNAKEN 60

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++ RF  TE Q +AI++L+L  L   +   +++E   L       + +L+S K+    + 
Sbjct: 61  LIERFDFTEIQAEAIVSLQLYRLTNTDITALENEAAALSRAIISYNKILSSSKELDKVMK 120

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ EVK+ ++        R T  +    +     + +I  E + V ++  G+I+     
Sbjct: 121 KELAEVKKNYASP------RLTVIQDQIEELKIDTEVLIASEEVIVSVTKEGYIKRTSLR 174

Query: 537 SVD---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           S      + L  KEGD        +T + +L+ ++ G     P   +   R       L 
Sbjct: 175 SYGASKPNELGIKEGDYPLYIQQLNTLNHLLIFTSKGNIIYRPVNEISDLRWKDMGEHLS 234

Query: 594 IDLNHNQDIVTAFVYDSTCKL-----LVVSSKGNAFIVEESEII---ANTRKGKTFLKVS 645
            ++  + D     V+  T +L       ++ +G       SE +       K  + +K+ 
Sbjct: 235 QNIAFSADETVVKVFGITQQLPQATFTFITKEGYIKQTAVSEYVIGRNYKNKSFSAIKLK 294

Query: 646 -SEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS-- 698
            + +++  ++         V +V      L +S++++P +  +  GV+  + K+G     
Sbjct: 295 TATDELINIIHTENPLLKDVFLVTHRGFGLRYSLEEVPVVGSKAAGVKSINLKEGDYVIN 354

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            V+          +    R   +  N L      R   G L+ +   ++
Sbjct: 355 GVLIDVEASKKELMILTHRGSIKKMNILDFESLGRAKRGLLLLRELKKN 403


>gi|227518802|ref|ZP_03948851.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           TX0104]
 gi|227073797|gb|EEI11760.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           TX0104]
          Length = 465

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/401 (18%), Positives = 157/401 (39%), Gaps = 27/401 (6%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLT 424
           R+ V+  R  F +    +R  I+ GL+ A   +D++IA IR     K    +    ++ T
Sbjct: 1   RKSVIINRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFT 60

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AI+ L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+
Sbjct: 61  EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKK 120

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +         R T  E    +       ++ +E + V +++ G+I+     S   S   
Sbjct: 121 QYGNP------RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPE 174

Query: 545 FKEGDSLKIALHA---HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNH 598
                     L+A   +T D +LL++  G     P   L   R           +++L  
Sbjct: 175 EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAI 234

Query: 599 NQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMK 651
           ++ I+  + Y     T   + ++  G     + ++         +  + +K+ S+ +++ 
Sbjct: 235 DESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEIT 294

Query: 652 LVVKVTGDH---VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE 707
            V          V +V      L + + ++P +  +  GV+  + K+            E
Sbjct: 295 NVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSE 354

Query: 708 GLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           G T  +    R   +           R   G +V +   ++
Sbjct: 355 GDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 395


>gi|295315229|gb|ADF97702.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315233|gb|ADF97704.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315235|gb|ADF97705.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315237|gb|ADF97706.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315239|gb|ADF97707.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315241|gb|ADF97708.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315243|gb|ADF97709.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315245|gb|ADF97710.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315247|gb|ADF97711.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315249|gb|ADF97712.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315253|gb|ADF97714.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315255|gb|ADF97715.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315257|gb|ADF97716.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315259|gb|ADF97717.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315261|gb|ADF97718.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315263|gb|ADF97719.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315267|gb|ADF97721.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315271|gb|ADF97723.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315273|gb|ADF97724.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315277|gb|ADF97726.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315279|gb|ADF97727.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315281|gb|ADF97728.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315283|gb|ADF97729.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315285|gb|ADF97730.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315287|gb|ADF97731.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315289|gb|ADF97732.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315291|gb|ADF97733.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315293|gb|ADF97734.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315297|gb|ADF97736.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315299|gb|ADF97737.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315301|gb|ADF97738.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315303|gb|ADF97739.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315305|gb|ADF97740.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315307|gb|ADF97741.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315309|gb|ADF97742.1| gyrase subunit A [Campylobacter jejuni]
          Length = 77

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/77 (63%), Positives = 57/77 (74%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFG 119
           Q F  RYP I+GQGNFG
Sbjct: 61  QDFSMRYPSITGQGNFG 77


>gi|9081883|gb|AAF82624.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 80

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 56/80 (70%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   
Sbjct: 1   RILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEAR 135
           GN G+ID D  AA RYTEA+
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|9081881|gb|AAF82623.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 80

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 56/80 (70%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   
Sbjct: 1   RILFAMHSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEAR 135
           GN G+ID D  AA RYTEA+
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|153873423|ref|ZP_02002012.1| DNA gyrase, A subunit [Beggiatoa sp. PS]
 gi|152070113|gb|EDN67990.1| DNA gyrase, A subunit [Beggiatoa sp. PS]
          Length = 203

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 3/140 (2%)

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + ++ G                G   + +    K+  V    G   V +  ++ K + F+
Sbjct: 1   MATAYGTVKKTALINFSRPRSNGIIAIGLDKGNKLISVDITDGHRDVMLFSQDGKAVRFN 60

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            +++  M R  +GVR            +     EG   + +    + +        +  R
Sbjct: 61  EEKVRSMGRTARGVRGIRLMPNDKVISLIIT-REGGMILTATVNGFGKRTQIDDYPVKGR 119

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
           G  G +  K   R+GK + +
Sbjct: 120 GIKGVIAIKTSDRNGKVVGA 139



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 6/179 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +     I   +  S  + A+   +G+ L           ++L S DGKA       + S
Sbjct: 7   TVKKTALINFSRPRSNGIIAIGLDKGNKLISVDITDGHRDVMLFSQDGKAVRFNEEKVRS 66

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKT 640
                  ++  I L  N  +++  +      +L  +  G     +  +     R  KG  
Sbjct: 67  MGRTARGVRG-IRLMPNDKVISLIITREGGMILTATVNGFGKRTQIDDYPVKGRGIKGVI 125

Query: 641 FLKVSS-EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
            +K S    K+   V+V  D  + ++     L+   ++ I  +SR  +GV L   K   
Sbjct: 126 AIKTSDRNGKVVGAVQVEDDEDIVLISNRGTLVRTPVNGISVISRNTQGVHLIRLKKDE 184


>gi|122893197|gb|ABM67555.1| DNA topoisomerase IV [Staphylococcus intermedius]
 gi|122893205|gb|ABM67559.1| DNA topoisomerase IV [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/79 (50%), Positives = 59/79 (74%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IG+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E 
Sbjct: 1   IGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQ 60

Query: 143 ILQGVDEDAVDFRDTYNEE 161
           IL+ +++D VDF   Y++ 
Sbjct: 61  ILRDINKDTVDFVPNYDDT 79


>gi|118139706|gb|ABK63299.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 89

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/88 (62%), Positives = 66/88 (75%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
                 A+KKSARIVG+ IGK  PHGD S +D+LVR+AQ F  R PL+ GQGNFG IDGD
Sbjct: 2   KTTTKNAYKKSARIVGDDIGKHQPHGDTSAHDALVRMAQSFSTRAPLVDGQGNFGTIDGD 61

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAV 152
           SAAA RYTEARMT++AE  L+ +D+D V
Sbjct: 62  SAAATRYTEARMTRIAEEELRDLDKDTV 89


>gi|238759144|ref|ZP_04620313.1| DNA topoisomerase 4 subunit A [Yersinia aldovae ATCC 35236]
 gi|238702692|gb|EEP95240.1| DNA topoisomerase 4 subunit A [Yersinia aldovae ATCC 35236]
          Length = 265

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 113/250 (45%), Gaps = 8/250 (3%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
             +  ++  EP+T+V+S  GW+RS K H +D S L +K GDS + A    +   ++ + +
Sbjct: 1   MSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFIDS 60

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            G++Y L    L S RG GE +   +       I    +     KLL+ S  G  F+   
Sbjct: 61  TGRSYALDPLTLPSARGQGEPLTGKLTPPPGAAIEQVLMAPDDQKLLMASDAGYGFVCTF 120

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSRGKG 686
           ++++A  R GKT + +    K    +++ G    +  +    ++L+F +  +PE+S+GKG
Sbjct: 121 NDLVAKNRAGKTMITLPENAKALPPLEIHGPDDMLLSITAAGRMLMFPVADLPELSKGKG 180

Query: 687 VRLQSYK-----DGGISDVICFKICEGLTW-IDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            ++ S        G       F +    +  +    R       DL  +  +RG  GS +
Sbjct: 181 NKIVSIPAAQAAAGEDRLAWLFVLPPQTSVTLHFGKRKLTLRPEDLQKFRAERGRKGSPL 240

Query: 741 PKGFPRSGKF 750
           P+G  R  + 
Sbjct: 241 PRGLQRIDRV 250


>gi|9081885|gb|AAF82625.1| topoisomerase IV subunit A [Staphylococcus capitis]
          Length = 80

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 56/80 (70%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+ AM   G  F   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   
Sbjct: 1   RILFAMYSSGNTFEKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEAR 135
           GN G+ID D  AA RYTEA+
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|5456794|gb|AAD43666.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
          Length = 82

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 61/82 (74%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYYAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +L+ ++++ V F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFI 82


>gi|60101260|gb|AAX13708.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 53/64 (82%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEA 134
           YTEA
Sbjct: 61  YTEA 64


>gi|5456798|gb|AAD43670.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 82

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYNAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +++ ++++ V F 
Sbjct: 61  AKLSQLSEELVRDINKETVSFI 82


>gi|116282951|gb|ABJ97451.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 69

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/69 (65%), Positives = 57/69 (82%)

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VGE++GK HPHGD+S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+
Sbjct: 1   RVVGEILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARL 60

Query: 137 TQVAELILQ 145
           T +AEL+L 
Sbjct: 61  TPIAELLLS 69


>gi|325512972|gb|ADZ23659.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 92

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/93 (53%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQPF  RY     QGNF +IDGDSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 1   DTIVRMAQPFSLRY-CWRWQGNFSSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFV 59

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 60  DNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 92


>gi|89243027|gb|ABD64769.1| topoisomerase IV ParC subunit [Parachlamydia acanthamoebae]
          Length = 94

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 9/102 (8%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A   I +RAIP + DG KPV RRI+H +  M         K A + G+ +   HPHGD  
Sbjct: 1   ASYVILDRAIPHVIDGLKPVQRRILHTLWSM---DDGKLHKVANVAGQTMA-YHPHGDAP 56

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEA 134
           + ++LV +A     R  L+  QGNFGNI  GD AAA RY E 
Sbjct: 57  ITEALVNMA----NRGYLLDQQGNFGNIFTGDPAAAARYIET 94


>gi|69250182|ref|ZP_00605118.1| DNA gyrase C-terminal repeat, beta-propeller [Enterococcus faecium
           DO]
 gi|68193990|gb|EAN08550.1| DNA gyrase C-terminal repeat, beta-propeller [Enterococcus faecium
           DO]
          Length = 251

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 102/238 (42%), Gaps = 11/238 (4%)

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           +         +LK H +D   L++K GDS K A+   +   ++ + + G++Y +    L 
Sbjct: 1   MCCRRWAGYAALKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP 60

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           S RG GE +   + L     +    +     KLL+ S  G  F+   ++++A  R GK  
Sbjct: 61  SARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKAL 120

Query: 642 LKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------ 693
           + +     +   V +    D +  + +  ++L+F +  +P++S+GKG ++ +        
Sbjct: 121 ITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAAR 180

Query: 694 -DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            + G++ +        LT      R       +L    G+RG  G+ + +G  R  + 
Sbjct: 181 GEDGLAQLYVLPPQSTLTI-HVGKRKIKLRPEELQKVTGERGRRGT-LMRGLQRIDRV 236


>gi|4928203|gb|AAD33462.1|AF129763_1 gyrase subunit A [Streptococcus mitis]
          Length = 74

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 60/74 (81%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 1   HKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 60

Query: 132 TEARMTQVAELILQ 145
           TEARM+++A  +L+
Sbjct: 61  TEARMSKIALEMLR 74


>gi|1542967|gb|AAB08037.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 69

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 53/69 (76%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY 
Sbjct: 1   KPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYM 60

Query: 111 LISGQGNFG 119
           L+ G GNFG
Sbjct: 61  LVDGHGNFG 69


>gi|295315227|gb|ADF97701.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315231|gb|ADF97703.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315251|gb|ADF97713.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315265|gb|ADF97720.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315269|gb|ADF97722.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315275|gb|ADF97725.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315295|gb|ADF97735.1| gyrase subunit A [Campylobacter jejuni]
          Length = 77

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/77 (63%), Positives = 57/77 (74%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFG 119
           Q F  RYP I+GQGNFG
Sbjct: 61  QDFSMRYPSITGQGNFG 77


>gi|71902126|ref|ZP_00684158.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
 gi|71728115|gb|EAO30314.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
          Length = 352

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 103/356 (28%), Positives = 174/356 (48%), Gaps = 15/356 (4%)

Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           +I IIRNED+PKPV+++RF L++ Q + IL+ +LR L +LEE  I+SE D L  E+++I+
Sbjct: 1   MIHIIRNEDEPKPVLIARFGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERDEIN 60

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L+S  Q    I  E+    + F  +      R       +A +A  +  ++  EP+TV
Sbjct: 61  VILDSDVQLKKLIKDELLADAKTFGDA------RRAPLVARQAAQAIDESELVASEPMTV 114

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+S +GWIR+ K H VD S + ++EGD L  A+   +T ++  L ++G+AY+     L S
Sbjct: 115 VLSEKGWIRAAKGHDVDPSGMSYREGDRLLAAVRTRSTHQVSFLDSEGRAYSTLVHTLPS 174

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            RG+GE +                  D+    ++ SS G  FI     +    + GK  +
Sbjct: 175 ARGNGEPLTGRFSPAPGASFQAMASADNDKLFVLASSHGYGFITRFENLTGRNKAGKAMI 234

Query: 643 KVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKD 694
            ++   ++  +  +T    D +  V     LL  +  ++PE+ +GKG +L          
Sbjct: 235 HLTPGAQVMGLAPLTDVQHDRIVAVTSAGNLLAIAASELPELDKGKGNKLIDIPKTKLAT 294

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             +  VI       L  + S  R+ + S  DL  +L  RG  G L+P+ + +    
Sbjct: 295 ERLVAVIAVASSHTL-LLYSGERTMHLSFKDLEAYLDTRGSRGQLLPRSWHKIDTL 349


>gi|36988567|gb|AAQ87921.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 75

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/75 (58%), Positives = 55/75 (73%), Gaps = 1/75 (1%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AMSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 120 NIDG-DSAAAYRYTE 133
             D   S AA RYTE
Sbjct: 61  APDDPKSFAAMRYTE 75


>gi|313633447|gb|EFS00274.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL N1-067]
          Length = 404

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 57/344 (16%), Positives = 131/344 (38%), Gaps = 22/344 (6%)

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K
Sbjct: 1   SEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELVAVLKAELSEIK 60

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DL 540
           + +         R T  +    +     + ++  E + V ++  G+++     S    + 
Sbjct: 61  KKYKTP------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNG 114

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLN 597
             L  KE D        ++ + +LL ++ G     P   L   R          L  DL+
Sbjct: 115 KELAMKEADHAIFIKKMNSLETLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLS 174

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLV 653
             ++I +      +    + L V+  G       +        K    +K+  ++++  V
Sbjct: 175 AGEEIRSVIDIQTFTEEKRFLFVTKNGMTKQSLITNYKPQRYSKSMMGIKLKDDDELLSV 234

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLT 710
             + G + + +  +N   L + I +IPE   R  GV+  + K D  +   +     +   
Sbjct: 235 HLIDGTEDIFLATKNGYGLRYPIAEIPESGARTAGVKAINLKQDDTVIGGVVLTQSDNRH 294

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
            + +  R   +           R   G L+ +   ++   +F+ 
Sbjct: 295 ILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KNNPHRFIG 337


>gi|315926261|ref|ZP_07922447.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620438|gb|EFV00433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 208

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 83/209 (39%), Positives = 131/209 (62%), Gaps = 6/209 (2%)

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +++ +D+D  DF+  Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN++E+ EA
Sbjct: 1   MVRDIDQDTADFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNLREVNEA 60

Query: 203 ALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
               + +P  S E+     +E I GPDFP G  ++  R+ I ++YR GRG   +RA   +
Sbjct: 61  VQWSLAHPNASHEELLEACMERIKGPDFPGGA-LIVGRQGIEDAYRTGRGSVTMRAVIDM 119

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317
           EE  +G  C+VVTE+PY      L  KIA+L+ + RI  + DIRD+S+    + ++    
Sbjct: 120 EEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQRLVIVLK 179

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           R   P ++M +++  + ++  F  NM  L
Sbjct: 180 RDAQPRVVMNNLYKHTALQDTFGCNMLAL 208


>gi|124108789|gb|ABM90971.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 70

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/70 (62%), Positives = 60/70 (85%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGN 120
           L+ GQGNFG+
Sbjct: 61  LVDGQGNFGS 70


>gi|60651678|gb|AAX32850.1| GyrA [Riemerella anatipestifer]
          Length = 69

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 42/64 (65%), Positives = 52/64 (81%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVY ++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDSSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEA 134
           YTEA
Sbjct: 61  YTEA 64


>gi|291335074|gb|ADD94703.1| hypothetical protein [uncultured phage MedDCM-OCT-S09-C23]
          Length = 417

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 123/327 (37%), Gaps = 31/327 (9%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +   +   +  +   ++  + L   + ER + +++     R+IP L DG K   R++++A
Sbjct: 88  LSDFDPDANVDIKTGSIVQMDLSQFINERMIHFSIDD-CGRSIPHLLDGLKESQRKVLYA 146

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQG 116
           + +  L + +   K  ++ G        H HG+Q +YD+++ LA         P +   G
Sbjct: 147 VFKKKLSYKSKTLKVNQLAGFTAEHTGYH-HGEQCLYDTIINLATDIMGKNNIPYLYRDG 205

Query: 117 NFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            FG+    G  A+A RY   +   +   +    D++ +  R+T + E  EP  +    P 
Sbjct: 206 QFGSRLDGGKDASAGRYIFTKEDMLTRKLFIPSDDNLLP-RNTDDGEPVEPRFYVPIIPT 264

Query: 175 LLANGTS-GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
            L NG   GI  G + S+P +N  ++  +                ++I     P      
Sbjct: 265 ALVNGCQAGIGTGWSCSLPLYNPLDLVSS--------------CKKWIKNQTLPELSPWY 310

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
              + ++      R      +   + E    +  I  TE+P  V  ++    + +L+  K
Sbjct: 311 RGFKGVI-----TRISPTKFSTSGLMERKNDTVTI--TELPIGVWTNKYKSFLEDLLEKK 363

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSL 320
            I  L +          I         
Sbjct: 364 FIKKLSNYSTPKEVKFVIKEHRNGMKC 390


>gi|89243025|gb|ABD64768.1| topoisomerase IV ParC subunit [Parachlamydia acanthamoebae]
          Length = 93

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 44/101 (43%), Positives = 56/101 (55%), Gaps = 9/101 (8%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A   I +RAIP + DG KPV RRI+H +  M         K A + G+ +   HPHGD  
Sbjct: 1   ASYVILDRAIPHVIDGLKPVQRRILHTLWSM---DDGKLHKVANVAGQTMA-YHPHGDAP 56

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTE 133
           + ++LV +A     R  L+  QGNFGNI  GD AAA RY E
Sbjct: 57  ITEALVNMA----NRGYLLDQQGNFGNIFTGDPAAAARYIE 93


>gi|315307938|gb|ADU04373.1| ParC [Vibrio cholerae O1 biovar El Tor]
          Length = 73

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 1   LSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 60

Query: 125 SAAAYRYTEARMT 137
           S AA RYTEA+++
Sbjct: 61  SFAAMRYTEAKLS 73


>gi|122893195|gb|ABM67554.1| DNA topoisomerase IV [Staphylococcus intermedius]
 gi|122893203|gb|ABM67558.1| DNA topoisomerase IV [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/79 (50%), Positives = 60/79 (75%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IG+LHPHGD+SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E 
Sbjct: 1   IGQLHPHGDRSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQ 60

Query: 143 ILQGVDEDAVDFRDTYNEE 161
           IL+ +++D VDF   Y++ 
Sbjct: 61  ILRDINKDTVDFVPNYDDT 79


>gi|320540723|ref|ZP_08040331.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
 gi|320029214|gb|EFW11285.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
          Length = 162

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/163 (50%), Positives = 107/163 (65%), Gaps = 2/163 (1%)

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ E+    LA
Sbjct: 1   DLEKETVDFVPNYDGTEQIPAVMPAKIPNLLINGASGIAVGMATNIPPHNLSEVINGCLA 60

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRG 264
            ID+  ISIE L+ +I GPDFPT   I+  R  I E+YR GRG   +RAR  VE +   G
Sbjct: 61  YIDDENISIEGLMAHIPGPDFPTAA-IINGRRGIEEAYRTGRGKIYLRARAEVESDAKTG 119

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +
Sbjct: 120 RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 162


>gi|37911071|gb|AAR04870.1| gyrase A [Campylobacter jejuni]
          Length = 77

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/77 (64%), Positives = 58/77 (75%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQ
Sbjct: 1   RILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDAAVYDALVRMAQDFSMRYPSITGQ 60

Query: 116 GNFGNIDGDSAAAYRYT 132
           GNFG+IDGDSAAA RYT
Sbjct: 61  GNFGSIDGDSAAAMRYT 77


>gi|115456153|ref|NP_001051677.1| Os03g0812000 [Oryza sativa Japonica Group]
 gi|113550148|dbj|BAF13591.1| Os03g0812000 [Oryza sativa Japonica Group]
          Length = 438

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 115/335 (34%), Gaps = 23/335 (6%)

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L++ LR L  LE  +   E  +L  E  K++ LL++ K  +  I  E  ++K  F+   
Sbjct: 1   LLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEATDLKNKFATPR 60

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPI-TVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                 +   EV   D    ++ ++       V              ++  S    +  D
Sbjct: 61  RSFIEDSASTEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMND 120

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV 607
           +    +   T D +L  S  G  Y+  A  +        G  +  L+ L+  + I +   
Sbjct: 121 NTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVP 180

Query: 608 YDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAV 663
            +       L++++  G    V  +   A    G   ++++  +++K V +   D  VA+
Sbjct: 181 VNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDLVAL 240

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT------------ 710
             +N  +++ + +++  + R  +GV     K+G     +                     
Sbjct: 241 ASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLS 300

Query: 711 ---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
               +  A     +         G    VG    K
Sbjct: 301 PPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYK 335



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 21/124 (16%)

Query: 614 LLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVA 662
           LL ++  G    V  +        R G    K+  +  +  V  V         + + V 
Sbjct: 304 LLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVV 363

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK---------ICEGLTWI 712
           +V ++  +    +  I   SR  +GV L   +  G                   E  + I
Sbjct: 364 LVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKIQSASLISAAEEEEEQDPESASLI 423

Query: 713 DSAG 716
             A 
Sbjct: 424 SEAE 427


>gi|60101274|gb|AAX13715.1| GyrA [Riemerella anatipestifer]
          Length = 64

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/63 (66%), Positives = 53/63 (84%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD SVY+++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 1   YLKSARIVGDVLGKYHPHGDSSVYNAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60

Query: 132 TEA 134
           TEA
Sbjct: 61  TEA 63


>gi|60101266|gb|AAX13711.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 53/64 (82%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEA 134
           YTEA
Sbjct: 61  YTEA 64


>gi|114228539|gb|ABI58274.1| DNA topoisomerase IV subunit A [Shigella sonnei]
          Length = 77

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DS 125
           +  A FKKS R VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S
Sbjct: 1   NASAKFKKSCRTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS 60

Query: 126 AAAYRYTEARMTQVAEL 142
            AA RYTE+R+++ +EL
Sbjct: 61  FAAMRYTESRLSKYSEL 77


>gi|60101264|gb|AAX13710.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 53/64 (82%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEA 134
           YTEA
Sbjct: 61  YTEA 64


>gi|60101276|gb|AAX13716.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 53/64 (82%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 2   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 61

Query: 131 YTEA 134
           YTEA
Sbjct: 62  YTEA 65


>gi|123484430|ref|XP_001324264.1| topoisomerase II [Trichomonas vaginalis G3]
 gi|121907144|gb|EAY12041.1| topoisomerase II [Trichomonas vaginalis G3]
          Length = 1458

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 109/288 (37%), Gaps = 25/288 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + T +      +     +++  + ++      RAIP   DG+KP  R+I+    +  +  
Sbjct: 659 NETYLGTKDTHIKYSDFVDKELILFSSYANY-RAIPSSIDGWKPGQRKILWVCLKNNIKN 717

Query: 69  GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                K A++ G+V      H HG+ S+ ++++ + Q F       +    G  G     
Sbjct: 718 D---LKVAQLSGKVSEQAAYH-HGEASLNETIIGMCQDFVGSNNINVFQPIGMLGTRLAG 773

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE-PVVFPSKFPNLLANGTS 181
           G+ + + RY    + ++   I    D+D + +    +E     PV +    P +L NG  
Sbjct: 774 GEDSGSPRYVYTALEKITRTIFMKEDDDLLTY--NTDEGLPIEPVTYIPIIPMVLVNGAK 831

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GI VG ++ +P +  Q+I +     +++  +           P +      +   + I +
Sbjct: 832 GIGVGWSSEVPQYCPQDIIDNLRRKMNDEPMVEMT-------PWYSGFTGKIIPIQVIKD 884

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL 289
             +     +  R              I +TE+P  +      + +  L
Sbjct: 885 GVKQPIVKWESRGIVK----KIDDTTIEITELPIGIWTYDYKKFLEGL 928


>gi|60101272|gb|AAX13714.1| GyrA [Riemerella anatipestifer]
          Length = 64

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEA 134
           YTEA
Sbjct: 61  YTEA 64


>gi|60651692|gb|AAX32857.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEA 134
           YTEA
Sbjct: 61  YTEA 64


>gi|60651684|gb|AAX32853.1| GyrA [Riemerella anatipestifer]
          Length = 70

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEA 134
           YTEA
Sbjct: 61  YTEA 64


>gi|60101262|gb|AAX13709.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 53/64 (82%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDNSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEA 134
           YTEA
Sbjct: 61  YTEA 64


>gi|217069479|gb|ACJ83228.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 185

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 83/187 (44%), Positives = 126/187 (67%), Gaps = 2/187 (1%)

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ +  L +IDN
Sbjct: 1   DTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYIIDN 60

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
            E S+E+++++I GPDFPTGG I+  ++ I+E+YR GRG  +VRA+  + E       IV
Sbjct: 61  KEASLEEIMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKVRAKTHI-EKRANKDIIV 118

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           + E+PYQ  K+RLIE+IA+L+  K+I  + +IRDES  +   V+    R    ++++ ++
Sbjct: 119 IDELPYQTNKARLIEQIADLVKEKQIEGISEIRDESDREGIRVVIELKREAMSEIVLNNL 178

Query: 330 FMLSDME 336
           F  + ME
Sbjct: 179 FKSTAME 185


>gi|328697364|ref|XP_003240317.1| PREDICTED: DNA topoisomerase 2-like [Acyrthosiphon pisum]
          Length = 333

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 115/342 (33%), Gaps = 36/342 (10%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLI 112
           ++    +          K A++ G V      H HG+ S+  ++V LAQ +       L+
Sbjct: 9   VLFTCIKRN---DKREIKVAQLAGSVAEHSAYH-HGEVSLMSTIVNLAQNYVGSNNINLL 64

Query: 113 SGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVV 167
              G FG     G  AA+ RY    ++ +  LI    D    D   TY   + +  EPV 
Sbjct: 65  QPIGQFGTRLQGGKDAASPRYIFTMLSPLTRLIFHPHD----DPLLTYLRDDNQKIEPVW 120

Query: 168 FPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFP 227
           +    P +L NG  GI  G  T IP+HN +E+      ++   +    K         + 
Sbjct: 121 YMPIIPMVLVNGAEGIGTGWMTKIPNHNPREVISNIKRMLRGEDPLPMKP--------WY 172

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
                   + S  +    G  G     R  + E+  G W         Q  K  ++E + 
Sbjct: 173 KNFTGHIEKLSEQKFISSGELGVIGHNRVEITELPVGVW--------TQNYKESVLEPML 224

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
                K   ++ D ++ + +     +   N         E I     +     L      
Sbjct: 225 T-DTEKSPAVITDYKEYNTDTTIKFVITMNPEKLQKAENEGIHKFFKLHASIGLTSMCAF 283

Query: 348 MGRV--PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
                  +      IL+E+ A R +   +R ++    +    
Sbjct: 284 DKDCVLKKYEATQQILREFYAVRLDFYGKRKAYLEGMLGAEA 325


>gi|60651686|gb|AAX32854.1| GyrA [Riemerella anatipestifer]
          Length = 70

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEA 134
           YTEA
Sbjct: 61  YTEA 64


>gi|332711872|ref|ZP_08431802.1| DNA topoisomerase [Lyngbya majuscula 3L]
 gi|332349200|gb|EGJ28810.1| DNA topoisomerase [Lyngbya majuscula 3L]
          Length = 86

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 55/81 (67%), Gaps = 1/81 (1%)

Query: 6  ISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
          ++    L+E  NV   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+
Sbjct: 1  MTKQLNLLENSNVIPTALHLEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHEL 60

Query: 65 GLDFGAAFKKSARIVGEVIGK 85
          GL     ++K AR+VG+V+GK
Sbjct: 61 GLTPDRPYRKCARVVGDVLGK 81


>gi|36988497|gb|AAQ87916.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 75

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/75 (58%), Positives = 55/75 (73%), Gaps = 1/75 (1%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AMSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 120 NIDG-DSAAAYRYTE 133
             D   S AA RYTE
Sbjct: 61  APDDPKSFAAMRYTE 75


>gi|315307940|gb|ADU04374.1| ParC [Vibrio fluvialis]
 gi|315307942|gb|ADU04375.1| ParC [Vibrio fluvialis]
          Length = 73

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 1   LSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 60

Query: 125 SAAAYRYTEARMT 137
           S AA RYTEA+++
Sbjct: 61  SFAAMRYTEAKLS 73


>gi|297790981|ref|XP_002863375.1| hypothetical protein ARALYDRAFT_916718 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297309210|gb|EFH39634.1| hypothetical protein ARALYDRAFT_916718 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 286

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 115/284 (40%), Gaps = 27/284 (9%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +T ++ ++  +S    +    + Y      ER IP + DG K   R+I+  + +     
Sbjct: 3   PDTHLDRSITRISYHDFINFELI-YFFQANLERCIPSVADGLKLSSRKILFTLFKCN--- 58

Query: 69  GAAFKK--SARIVGEVIG--KLHPHGDQSVYDSLVRLAQPFV---QRYPLISGQGNFGNI 121
               KK    ++  +V      H H  QS+  ++VR+AQ +V       L+   G FG+ 
Sbjct: 59  ----KKVTVEQLASDVSKTCSYH-HSQQSLAKTIVRMAQDYVGSPNNVNLLDPDGQFGSR 113

Query: 122 --DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
              G  A+  +Y    ++ +A ++    D+  + +    + +  EP+ +    P +L NG
Sbjct: 114 ISGGKDASNPKYIFTELSVMARVLFPNDDDVHLQYLK-EDGKTIEPLCYMPVIPTVLVNG 172

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             G+  G +T IP ++ +EI E    L+    +             F      V+S+  +
Sbjct: 173 ARGVGSGWSTFIPKYDPREIAENIRRLLKGEVMIAMDPW----YRKFKGTIEKVKSKAGV 228

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283
             + + G   ++    + V         +V+TE+P      + I
Sbjct: 229 TTASKEGPCTYKTSGLFEVI----NETTLVITELPVYKWTKKYI 268


>gi|312192217|gb|ADQ43805.1| DNA gyrase subunit A [Aerococcus sanguinicola]
          Length = 68

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 54/68 (79%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI++ M+E+G+     +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G 
Sbjct: 1   RILYGMNELGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGH 60

Query: 116 GNFGNIDG 123
           GNFG+IDG
Sbjct: 61  GNFGSIDG 68


>gi|60651690|gb|AAX32856.1| GyrA [Riemerella anatipestifer]
          Length = 69

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 54/63 (85%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 1   YLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60

Query: 132 TEA 134
           TEA
Sbjct: 61  TEA 63


>gi|60651688|gb|AAX32855.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 42/66 (63%), Positives = 55/66 (83%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KS+RIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSSRIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEARM 136
           YTEA +
Sbjct: 61  YTEAHL 66


>gi|40804952|gb|AAR91744.1| topoisomerase II [Trichomonas vaginalis]
          Length = 1458

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 104/266 (39%), Gaps = 15/266 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + T +      +     +++  + ++      RAIP   DG+KP  R+I+    +  +  
Sbjct: 659 NETYLGTKDTHIKYSDFVDKELILFSSYANY-RAIPSSIDGWKPGQRKILWVCLKNNIKN 717

Query: 69  GAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                K A++ G+V      H HG+ S+ ++++ + Q F       +    G  G     
Sbjct: 718 D---LKVAQLSGKVSEQAAYH-HGEASLNETIIGMCQDFVGSNNINVFQPIGMLGTRLAG 773

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE-PVVFPSKFPNLLANGTS 181
           G+ + + RY    + ++   I    D+D + +    +E     PV +    P +L NG  
Sbjct: 774 GEDSGSPRYVYTALEKITRTIFMKEDDDLLTY--NTDEGLPIEPVTYIPIIPMVLVNGAK 831

Query: 182 GIAVGMATSIPSHNVQEICEA-ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GI VG ++ +P +  Q+I +     + D P + +        G   P   I    ++ IV
Sbjct: 832 GIGVGWSSEVPQYCPQDIIDNLRRKMNDEPMVEMTPWYSGFTGKIIPIQVIKDGVKQPIV 891

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSW 266
           +    G           + E   G W
Sbjct: 892 KWESRGIVKKIDDTTIEITEFTNGIW 917


>gi|3023910|sp|P72065|GYRA_MYCXE RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mxe
           gyrA intein
 gi|1907313|gb|AAB81424.1| gyrase subunit A precursor [Mycobacterium xenopi]
          Length = 327

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 44/65 (67%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 1   RPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSMRYPLVDGQGNFGSPGNDPP 60

Query: 127 AAYRY 131
           AA RY
Sbjct: 61  AAMRY 65



 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/64 (57%), Positives = 47/64 (73%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA +T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 264 TEAPLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 323

Query: 192 PSHN 195
           P HN
Sbjct: 324 PPHN 327


>gi|190350975|dbj|BAB13754.2| type II DNA topoisomerase [Pichia guilliermondii]
          Length = 782

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 11/148 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  ++ + +   + +  + ++++    R+IP + DGFKP  R++++   +  L  
Sbjct: 624 PGTHLDPQIREIPISEFINKELILFSMADNV-RSIPSILDGFKPGQRKVLYGCFKRNLRS 682

Query: 69  GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                K A++VG +      H HG+ S+  ++V LAQ F       L+   G FG+    
Sbjct: 683 E---IKVAQLVGYISEHTGYH-HGEGSLAQTIVGLAQNFVGANNLNLLQPIGLFGSRAAG 738

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDED 150
           G   +A RY    +T +  +I   +D+D
Sbjct: 739 GKDFSAVRYIHTNITDLTRVIFNPLDDD 766


>gi|60101268|gb|AAX13712.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/61 (70%), Positives = 53/61 (86%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RYTE
Sbjct: 4   KSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTE 63

Query: 134 A 134
           A
Sbjct: 64  A 64


>gi|60651694|gb|AAX32858.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/64 (65%), Positives = 53/64 (82%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD+ VYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRPVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEA 134
           YTEA
Sbjct: 61  YTEA 64


>gi|73852918|ref|YP_294202.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
 gi|72415634|emb|CAI65871.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
 gi|283481658|emb|CAZ69774.1| putative DNA topoisomerase [Emiliania huxleyi virus 99B1]
          Length = 1103

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 93/515 (18%), Positives = 186/515 (36%), Gaps = 65/515 (12%)

Query: 5    NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII-HAMSE 63
            N  N N  +  + ++ ++   + +  + ++      R+IP + DG K   R+++ +A++ 
Sbjct: 629  NQYNPNANINYSAQSTTIERFIYDDLMHFSNYDNI-RSIPKMLDGQKAGQRKVVFYALNH 687

Query: 64   MGLDFGAAFKKSARIVG---EVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNF 118
            +G        K A++ G   +V  + H HG+ S+ ++++ +A  +      PL+   G F
Sbjct: 688  VG----KNEAKVAQMAGTAAQVT-QYH-HGEVSLANTIIGMAATYTGSHNLPLLYPSGQF 741

Query: 119  GNIDGD-SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLL 176
            G+     SAAA RY    ++     +++  D D + +    +E    EP V+    P +L
Sbjct: 742  GSRHAKNSAAAPRYIFTHISSFLPRLIKSEDNDVLTY--NVDENKKVEPTVYIPVIPIVL 799

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG +GI  G    +P +N  E+ +A   + +  E+S  K + + +G             
Sbjct: 800  VNGANGIGTGWKCDVPQYNPLEVIDACKRMANGGELSTSKWVPWYVG------------- 846

Query: 237  ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
                     G+          +         + VTE+P        IE I  LI  K   
Sbjct: 847  -------YNGKMEETTDGFNSIGTYEVSGNTLTVTELPIGRATEDWIESIQSLIPDKIKN 899

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
              +++  +S   V I L   +   DP   ++    L           N ++    P  + 
Sbjct: 900  YEKNLGPDS---VTIKLNLTSPIDDPVATLKLSTKLQTNRMWLYNAKNKITHYAGPTQI- 955

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA------IIRNE 410
                      H RE L    + R+  I++    +  L      I E I        +   
Sbjct: 956  -------IQEHARERLKLYEASRISQIEKASHKMDLLNNKIRYIMEFIEGKIKIGKMSTS 1008

Query: 411  DKPKPVMVSRFSLTENQVDAIL-NLRLRSLRKLEEYQIKSEL----------DNLLAEKE 459
               + +  + +  + N    +  ++    L      ++++++              A K 
Sbjct: 1009 SLNEYLAQNGYLRSNNSFRYLTDDISTGQLTTDNVDKLRNQIRNITTDIDALRETTANKM 1068

Query: 460  KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
             I  L    K+    I   +  + E   K     +
Sbjct: 1069 WITDLNALRKEVDEYIVERLTPLDEDAPKPKKARK 1103


>gi|36988539|gb|AAQ87919.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 74

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/74 (58%), Positives = 54/74 (72%), Gaps = 1/74 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G 
Sbjct: 1   MSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 121 IDG-DSAAAYRYTE 133
            D   S AA RYTE
Sbjct: 61  PDDPKSFAAMRYTE 74


>gi|2501245|sp|Q49467|GYRA_MYCGO RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mgo
           gyrA intein
 gi|1122292|emb|CAA92432.1| DNA gyrase subunit A [Mycobacterium gordonae]
          Length = 550

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 44/65 (67%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 2   RPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 61

Query: 127 AAYRY 131
           AA RY
Sbjct: 62  AAMRY 66



 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/64 (59%), Positives = 48/64 (75%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 487 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 546

Query: 192 PSHN 195
           P HN
Sbjct: 547 PPHN 550


>gi|2501244|sp|Q49166|GYRA_MYCFV RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mfl
           gyrA intein
 gi|1122290|emb|CAA92433.1| DNA gyrase subunit A [Mycobacterium flavescens]
          Length = 554

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 44/65 (67%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 5   RPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 64

Query: 127 AAYRY 131
           AA RY
Sbjct: 65  AAMRY 69



 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/64 (59%), Positives = 48/64 (75%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 491 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 550

Query: 192 PSHN 195
           P HN
Sbjct: 551 PPHN 554


>gi|323695898|gb|ADX99573.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 64

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/64 (59%), Positives = 53/64 (82%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYEAMVR 60

Query: 101 LAQP 104
           +AQ 
Sbjct: 61  MAQD 64


>gi|28916614|gb|AAO59540.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 197

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 86/198 (43%), Positives = 132/198 (66%), Gaps = 1/198 (0%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D +D++D Y+  + EPVV PS+FPNLL NG +GIA GMAT+IP H + E+ E  LA+ +
Sbjct: 1   KDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAAGMATNIPPHQLGEVIEGVLAVSE 60

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           NPEI+ ++L+EYI G DFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I
Sbjct: 61  NPEITNQELMEYIPGRDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERI 119

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +
Sbjct: 120 IVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNN 179

Query: 329 IFMLSDMETRFPLNMNVL 346
           ++  + ++T F +N+  L
Sbjct: 180 LYKQTALQTSFGINLLAL 197


>gi|71842516|gb|AAZ43365.1| ParC [Escherichia coli]
          Length = 73

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DS 125
           +  A FKKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G  D   S
Sbjct: 1   NASAKFKKSARTVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS 60

Query: 126 AAAYRYTEARMTQ 138
            AA RYTE+R+++
Sbjct: 61  FAAMRYTESRLSK 73


>gi|2780355|dbj|BAA24278.1| GyrA subunit of Enterobacter cloacae DNA gyrase
          Length = 65

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/65 (69%), Positives = 56/65 (86%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAA 128
           DSAAA
Sbjct: 61  DSAAA 65


>gi|309357377|emb|CAP35657.2| hypothetical protein CBG_18156 [Caenorhabditis briggsae AF16]
          Length = 1207

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 89/540 (16%), Positives = 183/540 (33%), Gaps = 80/540 (14%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            G D +S +  + +     ++    +  + + + ++ +K R+IP L DG KP  R+I+  +
Sbjct: 684  GSDEVSTTEDVEK---TELNYEEFVNSQLMQFGMADLK-RSIPSLIDGLKPSQRKILWTL 739

Query: 62   SEMGLDFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGN 117
             +M         K +++ G V  +   H HG++S+  ++VR+ Q F      PL+   G 
Sbjct: 740  LKM---DETTEMKVSQLAGAVAHRQSYH-HGEESLVRTIVRMGQTFCGASNMPLLQPIGQ 795

Query: 118  FGNIDG------DSAAAYRYTEAR--------------------------MTQVAELILQ 145
            FG                R++E R                          +     L+  
Sbjct: 796  FGTRHEVRVIMITPPHFLRFSEKRNNLEKNGKCHSIQHPKKPICPQNQVPVNPTTRLLFP 855

Query: 146  GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
              D+D ++ +        EP       P +L NGT GI  G +T + + N  ++ +    
Sbjct: 856  IADDDLLE-KKVEEGITVEPNTLCPIIPLILVNGTEGIGTGWSTKVANRNPVDVIDMIRR 914

Query: 206  LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
             ID   + + ++  +    D+     IV   + I           R  A           
Sbjct: 915  KIDLSSLVVNEIPPFY--EDYKGKIEIVTPTKFISTGKIKISRPERKNAST--------- 963

Query: 266  WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
            + + ++E+P  V  S+  EK++ ++    I    +   E   + R++   K  +      
Sbjct: 964  FSVEISELPIGVWTSKYKEKLSNILEKLPITEFSERHTEKQVNFRLIFDRKKAARFLQKS 1023

Query: 326  MESIFMLSDMETRFPLNMNVLSMGRVPQVMP--------LDGILKEWLAHRREVLFRRSS 377
               +     + T    N  +       +              I K+    R E+  R   
Sbjct: 1024 NSDLLNYFKLRTSITENRVLFDRNGQLKEFGNVSEIANEFFEIRKDLYQKRLEIQKRECE 1083

Query: 378  FRMQAIDRRVEIL----------KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             +++ ++ +V +            G         E + +   E   +   +   +  ++ 
Sbjct: 1084 AKLKYVNNQVHLYYYMNFIELVTNGTFELKSMDRESLELKLEEIGFEVDSMKTENSKKSN 1143

Query: 428  VDAILNLRLRSLRKLEEY-----QIKSELDNLLAEKEKIDSLLNSG-KQQWNQIACEIRE 481
               +L + L  L   E       + +  L+   AE     S  +S   +    I    +E
Sbjct: 1144 YGYLLEMPLSRLTLDEMNRLKERKSRRNLELKAAESADWKSTWHSELDKLEESIKKTRKE 1203


>gi|94471631|gb|ABF21082.1| DNA gyrase subunit A [Spiroplasma culicicola]
          Length = 86

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/85 (49%), Positives = 60/85 (70%), Gaps = 2/85 (2%)

Query: 6  ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
          +S++  L    +  + ++  +E+ +L Y++S I  RA+PDLRDG KPVHRRII+AM+++ 
Sbjct: 4  MSDNLGL--GKILEIDIKNEVEKDFLEYSMSVIVSRALPDLRDGLKPVHRRIIYAMNDLK 61

Query: 66 LDFGAAFKKSARIVGEVIGKLHPHG 90
          +      KKSARIVGEVIGK HPHG
Sbjct: 62 ITSDTPHKKSARIVGEVIGKYHPHG 86


>gi|323695904|gb|ADX99576.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 67

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 38/67 (56%), Positives = 53/67 (79%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVH RI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 1   RALPDVRDGLKPVHCRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 101 LAQPFVQ 107
           +AQ F  
Sbjct: 61  MAQDFSY 67


>gi|49425512|gb|AAT66071.1| DNA topoisomerase IV subunit A [Shigella dysenteriae]
          Length = 69

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 1   SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 60

Query: 134 ARMTQVAEL 142
           +R+++ +EL
Sbjct: 61  SRLSKYSEL 69


>gi|166156947|gb|ABY83102.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156949|gb|ABY83103.1| DNA gyrase A [Campylobacter jejuni]
          Length = 75

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/75 (64%), Positives = 56/75 (74%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQG
Sbjct: 1   ILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQG 60

Query: 117 NFGNIDGDSAAAYRY 131
           NFG+IDGDSAAA RY
Sbjct: 61  NFGSIDGDSAAAMRY 75


>gi|217069489|gb|ACJ83233.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 178

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 79/172 (45%), Positives = 117/172 (68%), Gaps = 2/172 (1%)

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+
Sbjct: 1   DKDTVDFVPXYDDXMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDGLLYLL 60

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+ + S+E L+++I GPDFPTGG I+  ++ I+E+YR GRG  ++RA+  + E       
Sbjct: 61  DHKDASLEDLMQFIKGPDFPTGG-IIYGKKGIIEAYRTGRGRVKIRAKTHI-EKKSNKDI 118

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  +   V+    R 
Sbjct: 119 IVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKRE 170


>gi|60651682|gb|AAX32852.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 40/61 (65%), Positives = 50/61 (81%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 Y 131
           Y
Sbjct: 61  Y 61


>gi|2598663|dbj|BAA23307.1| CfgyrA [Citrobacter freundii]
          Length = 65

 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 44/65 (67%), Positives = 56/65 (86%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAA 128
           DSAAA
Sbjct: 61  DSAAA 65


>gi|4566360|gb|AAD23314.1| topoisomerase IV subunit A [Streptococcus oralis ATCC 35037]
 gi|4566362|gb|AAD23315.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566368|gb|AAD23318.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566380|gb|AAD23324.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score =  146 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 55/77 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGVDEDAV 152
           ++++A  +LQ +++  V
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|36988526|gb|AAQ87918.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 73

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 1/73 (1%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  
Sbjct: 1   SELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 122 DG-DSAAAYRYTE 133
           D   S AA RYTE
Sbjct: 61  DDPKSFAAMRYTE 73


>gi|323695902|gb|ADX99575.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 66

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/64 (59%), Positives = 53/64 (82%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 3   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 62

Query: 101 LAQP 104
           +AQ 
Sbjct: 63  MAQD 66


>gi|329725076|gb|EGG61570.1| putative DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           VCU144]
          Length = 379

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 136/325 (41%), Gaps = 18/325 (5%)

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F      
Sbjct: 1   MLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFKVD--- 57

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGD 549
              R +  E   ++    ++ M+  E + + ++  G+I+   + S     ++ +  K+GD
Sbjct: 58  ---RLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLKDGD 114

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAF- 606
            L      +T D +L+ +  G+   +P      +  +  G+ I  ++ ++ ++++V  + 
Sbjct: 115 RLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYN 174

Query: 607 --VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDHVA- 662
              + +    ++ +  G       S+       K    +KV  ++++  VV++  D +  
Sbjct: 175 EKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQLIT 234

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           V+      L +S +++ +   R  GV+  + KD     V+   + +  + I    R   +
Sbjct: 235 VLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYV-VMTEDVNDSDSIIMVTQRGAMK 293

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
             +  +    KR   G  + K   +
Sbjct: 294 RIDFNVLQEAKRAQRGITLLKELKK 318


>gi|325663390|ref|ZP_08151840.1| hypothetical protein HMPREF0490_02581 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470844|gb|EGC74074.1| hypothetical protein HMPREF0490_02581 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 214

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 43/132 (32%), Gaps = 3/132 (2%)

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
                 ++     + G   + +  ++++  V     +  + +V +  + + F    +   
Sbjct: 1   MKKTPITDYANVRKTGLAAITLREDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVRST 60

Query: 682 SRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +  D      +     +G   + ++ +   +           RGG G   
Sbjct: 61  GRTSMGVRGMNLSDRDEVIGMQL-HTQGDYLLIASEKGMGKRTAIEEFTCQNRGGKGVKC 119

Query: 741 PKGFPRSGKFLS 752
            K   ++G  + 
Sbjct: 120 YKITEKTGNVIG 131



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 8/146 (5%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I++++  G+       ++ S       ++ + +L+   +++   ++     LL+ S KG 
Sbjct: 40  IIMVTKYGQCIRFKEQDVRSTGRTSMGVRGM-NLSDRDEVIGMQLHTQGDYLLIASEKGM 98

Query: 623 AFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                  E     R GK      +   +   +  V  V  D  + ++     ++      
Sbjct: 99  GKRTAIEEFTCQNRGGKGVKCYKITEKTGN-VIGVKAVNEDNEIMIINTEGIVIRMECAG 157

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVIC 702
           I  + R   GV+L +         I 
Sbjct: 158 ISILGRVASGVKLINLDSNTKVASIA 183



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 60/174 (34%), Gaps = 8/174 (4%)

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA- 633
           +    +       +     I L  + +++   + D+   +++V+  G     +E ++ + 
Sbjct: 1   MKKTPITDYANVRKTGLAAITLREDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVRST 60

Query: 634 -NTRKGKTFLKVSSEEKMKLVVK-VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL- 689
             T  G   + +S  +++  +     GD++ +  E       +I++    +R GKGV+  
Sbjct: 61  GRTSMGVRGMNLSDRDEVIGMQLHTQGDYLLIASEKGMGKRTAIEEFTCQNRGGKGVKCY 120

Query: 690 -QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             + K G +  V      E    +                 +  R   G  +  
Sbjct: 121 KITEKTGNVIGVKAVN--EDNEIMIINTEGIVIRMECAGISILGRVASGVKLIN 172


>gi|323695900|gb|ADX99574.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 64

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/64 (59%), Positives = 53/64 (82%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 101 LAQP 104
           +AQ 
Sbjct: 61  MAQD 64


>gi|24020906|gb|AAN40848.1| GyrA [Streptococcus mitis]
          Length = 67

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 56/67 (83%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 1   KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 60

Query: 133 EARMTQV 139
           EARM+++
Sbjct: 61  EARMSKI 67


>gi|11558104|emb|CAC17731.1| GyrA protein [Mycobacterium gastri]
          Length = 550

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 44/63 (69%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA
Sbjct: 1   DRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAA 60

Query: 129 YRY 131
            RY
Sbjct: 61  MRY 63



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 49/67 (73%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  I++ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 484 TEARLTPLAMEIVREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 543

Query: 192 PSHNVQE 198
           P HN  E
Sbjct: 544 PPHNKGE 550


>gi|4566372|gb|AAD23320.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566378|gb|AAD23323.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 55/77 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGVDEDAV 152
           ++++A  +LQ +++  V
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|36988511|gb|AAQ87917.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 72

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 52/72 (72%), Gaps = 1/72 (1%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D
Sbjct: 1   ELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 60

Query: 123 G-DSAAAYRYTE 133
              S AA RYTE
Sbjct: 61  DPKSFAAMRYTE 72


>gi|551907|gb|AAA91334.1| topoisomerase II subunit A [Mycoplasma gallisepticum]
          Length = 86

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 57/86 (66%)

Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
          + ++ +    L   +   +  YA   I+ERA+PD+RDG KPV RR+++ M  +GL +  +
Sbjct: 1  MDKKKIFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKS 60

Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDS 97
          ++KSA  VGEVIGK HPHGD S+Y++
Sbjct: 61 YRKSAATVGEVIGKFHPHGDSSIYEA 86


>gi|330685624|gb|EGG97268.1| putative DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           VCU121]
          Length = 415

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 140/346 (40%), Gaps = 20/346 (5%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F  TE Q +AI+ L+L  L   +   ++ E D L    + +  +L+      N I  E+ 
Sbjct: 24  FDFTEAQAEAIVMLQLYRLTNTDIVALEQEHDELSNLIKDLRHILDDHDALLNVIKNELT 83

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-- 538
           E+++ F         R +  E   ++    ++ M+  E + + ++  G+I+   + S   
Sbjct: 84  EIRKKFKTD------RLSTIEAEISEIKIDKEVMVPSEEVVLSLTRHGYIKRTTTRSFNA 137

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLID 595
             +S +  K+GDSL   L  +T D  L+ +  G+   +P      +  +  G+ +  ++ 
Sbjct: 138 SGVSEVGLKDGDSLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKELGQHVSQIVS 197

Query: 596 LNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKM 650
           ++ ++ ++  F            ++ +  G        +       K    +KV  ++++
Sbjct: 198 IDEDEQVIDVFNEKDFSQHEAFYIMATRNGMIKKSSVPQFKTTRYNKPLIAMKVKDQDEV 257

Query: 651 KLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEG 708
             +++V  D +  V+      L +S +++ +   R  GV+  + KD     +    I   
Sbjct: 258 INIMRVESDQLITVITHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDFVVMTQM-INHS 316

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753
            + + +  R   +     +    KR   G  + K   ++  + +++
Sbjct: 317 ESVMMATQRGAIKHIGFKVLQEAKRAQRGITLLKELKKAPHRIVAA 362


>gi|148645152|gb|ABR01100.1| GyrA [uncultured Geobacter sp.]
          Length = 132

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 4/117 (3%)

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              + +   +K+  V    G   V +  ++ K + F  + +  + R  +GVR  + +D  
Sbjct: 1   IIAVNLDEGDKLITVALTDGRQDVLLASKHGKCIRFKEEDVRTVGRVSRGVRGMTLEDDD 60

Query: 697 ISDVICFKICE--GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +   +          T        Y +           RGG G +  K   R+G  +
Sbjct: 61  VVIGMTILNENFTDSTIFTVTENGYGKRTEISEYRCQSRGGKGVITIKTTERNGCVV 117



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 9/129 (6%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK 651
           ++L+    ++T  + D    +L+ S  G     +E ++    R  +G   + +  ++ + 
Sbjct: 4   VNLDEGDKLITVALTDGRQDVLLASKHGKCIRFKEEDVRTVGRVSRGVRGMTLEDDDVVI 63

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS--YKDGGISDVICFK 704
            +  +    T   +  V EN       I +    SR GKGV       ++G + D+    
Sbjct: 64  GMTILNENFTDSTIFTVTENGYGKRTEISEYRCQSRGGKGVITIKTTERNGCVVDIKQVS 123

Query: 705 ICEGLTWID 713
               L  I 
Sbjct: 124 DENDLMLIT 132



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 42/116 (36%), Gaps = 8/116 (6%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCK 613
                 +LL S  GK       ++ +       ++ +  L  +  ++   + +       
Sbjct: 18  TDGRQDVLLASKHGKCIRFKEEDVRTVGRVSRGVRGM-TLEDDDVVIGMTILNENFTDST 76

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVG 665
           +  V+  G     E SE    +R GK  + + + E+   +  + +V   + + ++ 
Sbjct: 77  IFTVTENGYGKRTEISEYRCQSRGGKGVITIKTTERNGCVVDIKQVSDENDLMLIT 132


>gi|315613998|gb|ADU52599.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614000|gb|ADU52600.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614002|gb|ADU52601.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614004|gb|ADU52602.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 68

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/68 (70%), Positives = 57/68 (83%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA 
Sbjct: 1   AAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAM 60

Query: 130 RYTEARMT 137
           RYTE RM 
Sbjct: 61  RYTEIRMA 68


>gi|166156951|gb|ABY83104.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156953|gb|ABY83105.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156955|gb|ABY83106.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156957|gb|ABY83107.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156959|gb|ABY83108.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156961|gb|ABY83109.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156963|gb|ABY83110.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156965|gb|ABY83111.1| DNA gyrase A [Campylobacter jejuni]
          Length = 75

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/75 (64%), Positives = 56/75 (74%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQG
Sbjct: 1   ILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQG 60

Query: 117 NFGNIDGDSAAAYRY 131
           NFG+IDGDSAAA RY
Sbjct: 61  NFGSIDGDSAAAMRY 75


>gi|284027752|gb|ADB66701.1| ParC [Salmonella enterica subsp. enterica]
          Length = 90

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 59/84 (70%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
            +R +P + DG  PV RRI++AMS +G++  A FK SAR VG+ +GK HPHGD + Y+ +
Sbjct: 7   MDRVLPSIGDGLGPVQRRIVYAMSALGVNATAKFKLSARTVGDGLGKNHPHGDSASYEDM 66

Query: 99  VRLAQPFVQRYPLISGQGNFGNID 122
             +AQPF  RYPL+ GQGN+G  D
Sbjct: 67  FLMAQPFSYRYPLVDGQGNWGAPD 90


>gi|60101270|gb|AAX13713.1| GyrA [Riemerella anatipestifer]
 gi|60651672|gb|AAX32847.1| GyrA [Riemerella anatipestifer]
          Length = 61

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD SVY ++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 1   YLKSARIVGDVLGKYHPHGDSSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60


>gi|10281028|dbj|BAB13755.1| type II DNA topoisomerase [Clavispora lusitaniae]
          Length = 772

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  ++ + +   + +  + ++++    R++P + DG KP  R++I+ + +     
Sbjct: 614 PGTQLDPEIEEIPIADFINKELILFSMADNI-RSLPCVLDGLKPAQRKVIYGLQK---RA 669

Query: 69  GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
           G    K   + G +      H HGDQS+  ++V +AQ F       L+  +GNFG+    
Sbjct: 670 GNREGKVNDLAGYISSNTAYH-HGDQSLVMTIVSMAQDFVGANNINLLEPRGNFGSRFMG 728

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           G  A+A RY    ++++ + +   +D     +    +E   EP  
Sbjct: 729 GKDASAARYIHTCLSEITKSVYNPLDNSLYKYV-QEDESTVEPQW 772


>gi|56554393|pdb|1WP5|A Chain A, Crystal Structure Of The C-Terminal Domain Of Dna
           Topoisomerase Iv
          Length = 323

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 87/243 (35%), Gaps = 11/243 (4%)

Query: 516 EKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
             E + V ++  G+++     S    +      K+ D L   L  +T D +LL +  G  
Sbjct: 3   ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAXKDTDRLLAXLEXNTKDVLLLFTNKGNY 62

Query: 573 YTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVE 627
              P   L   R     + I  +I ++ +++I+ A   +        L V+  G     E
Sbjct: 63  LYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGXVKKTE 122

Query: 628 ESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RG 684
                A    K  T + + +++++  V    G + + +V  N   L F   ++  +  R 
Sbjct: 123 LKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGXNELFLVTHNGYALWFDESEVSIVGVRA 182

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            GV+  + K+G           +  + + +  R   +           R   G ++ +  
Sbjct: 183 AGVKGXNLKEGDYIVSGQLITSKDESIVVATQRGAVKKXKLTEFEKATRAKRGVVILREL 242

Query: 745 PRS 747
             +
Sbjct: 243 KAN 245



 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 74/238 (31%), Gaps = 10/238 (4%)

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
           +    ++L       + L     +   I    +++ +  +    + R       +   D 
Sbjct: 46  EXNTKDVLLLFTNKGNYLYCPVHELPDIRW--KDLGQHIANIIPIDRDEEIIKAIPINDF 103

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V  +     ++ + +S  L+ ++ K  D +         + + L++
Sbjct: 104 ELNGYFLFVTRNGXVKKTELKHYKAQR-YSKPLTGINLKNDDQVVDVHLTDGXNELFLVT 162

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT-AFVYDSTCKLLVVSSKGNAFIV 626
            +G A       +        A     +L     IV+   +      ++V + +G     
Sbjct: 163 HNGYALWFDESEVSIVGVRA-AGVKGXNLKEGDYIVSGQLITSKDESIVVATQRGAVKKX 221

Query: 627 EESEIIANTR--KGKTFLK-VSSEEKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIP 679
           + +E    TR  +G   L+ + +        VV    D + +  E   +    +  I 
Sbjct: 222 KLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDIR 279


>gi|36988551|gb|AAQ87920.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 71

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D 
Sbjct: 1   LGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDD 60

Query: 124 -DSAAAYRYTE 133
             S AA RYTE
Sbjct: 61  PKSFAAMRYTE 71


>gi|325515305|gb|ADZ24286.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668268|gb|ADZ44578.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 42/59 (71%), Positives = 51/59 (86%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|224533041|ref|ZP_03673647.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
 gi|224512035|gb|EEF82430.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
          Length = 114

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 8/102 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNL 94


>gi|328791048|ref|XP_001119985.2| PREDICTED: DNA topoisomerase 2 [Apis mellifera]
          Length = 1447

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 83/543 (15%), Positives = 158/543 (29%), Gaps = 92/543 (16%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E++ + VS    +    + Y+      R+IP++ DGFKP  R++++   +        
Sbjct: 675  LYEKDTRTVSFSDFINVELVLYSNYDNV-RSIPNMIDGFKPGQRKVLYTCLKRN---DKR 730

Query: 72   FKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDS 125
              K A++ G V      H HG+ S+  +++ LAQ F       L+   G FG     G  
Sbjct: 731  EVKVAQLAGSVAEHSAYH-HGEVSLMSTIINLAQNFVGSNNINLLQPIGQFGTRLAGGKD 789

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA+ RY           +L+ +      +   Y                           
Sbjct: 790  AASPRYIFT--------MLRYI------YIPNY--------------------------- 808

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
                     N +EI E               L   + G D        ++ + ++ES   
Sbjct: 809  ---------NPREIIE--------------NLYRMMDGADPKPMVPYYKNFKGVIESCGD 845

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---LIIAKRIPLLEDIR 302
             R  + +     V     G   I +TE+P         E + E       K    + D +
Sbjct: 846  FR--YIINGEISVI----GPDKIEITELPIGTWTQTYKETVLEPMLHGTDKTPATITDYK 899

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV--PQVMPLDGI 360
            + + +     +   NR    DL  + +     ++T   +             +   +  I
Sbjct: 900  EYNTDTAVHFIIMLNRDKLLDLERDGLHKAFKLQTTMTVTSMCAFDENQCLQKYDSVLQI 959

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            LK +   R E+  +R  +    +         +   I       I+   +        ++
Sbjct: 960  LKGFYKVRLEMYHKRKEYLEGILQAEASKLSNQARFIVEKCDGTIVIENKKRKDMIAELI 1019

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             R   ++  +   L+   R     E  +   +         K +     G   W+    +
Sbjct: 1020 RREYESDPVLAWKLSQN-REEVLEEVAENVDDETVSSTAITKENFDYLLGMTLWSLTKEK 1078

Query: 479  IREVKEIFSKSTDLGRR---RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
              E+           +R   RT            L +    +E                 
Sbjct: 1079 KDELLRQKDDKLAELKRLQARTPISLWKEDLDNLLNELNRLEEKERKEEQKSKQCIKKPP 1138

Query: 536  HSV 538
               
Sbjct: 1139 SKY 1141


>gi|60651676|gb|AAX32849.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/61 (65%), Positives = 50/61 (81%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 Y 131
           Y
Sbjct: 61  Y 61


>gi|114228537|gb|ABI58273.1| DNA topoisomerase IV subunit A [Shigella flexneri]
          Length = 72

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 53/72 (73%), Gaps = 1/72 (1%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSA 126
             A FKKS R VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S 
Sbjct: 1   ASAKFKKSDRTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 60

Query: 127 AAYRYTEARMTQ 138
           AA RYTE+R+++
Sbjct: 61  AAMRYTESRLSK 72


>gi|4566370|gb|AAD23319.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566376|gb|AAD23322.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 55/77 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDISIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGVDEDAV 152
           ++++A  +LQ +++  V
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|4566364|gb|AAD23316.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566366|gb|AAD23317.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566374|gb|AAD23321.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 55/77 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGVDEDAV 152
           ++++A  +LQ +++  V
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|60651680|gb|AAX32851.1| GyrA [Riemerella anatipestifer]
 gi|60651698|gb|AAX32860.1| GyrA [Riemerella anatipestifer]
 gi|60651700|gb|AAX32861.1| GyrA [Riemerella anatipestifer]
 gi|60651702|gb|AAX32862.1| GyrA [Riemerella anatipestifer]
 gi|60651704|gb|AAX32863.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 40/61 (65%), Positives = 51/61 (83%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 Y 131
           Y
Sbjct: 61  Y 61


>gi|46191315|ref|ZP_00206761.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II,
          topoisomerase IV), A subunit [Bifidobacterium longum
          DJO10A]
          Length = 115

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 38/80 (47%), Positives = 50/80 (62%)

Query: 9  SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L  
Sbjct: 13 DPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTP 72

Query: 69 GAAFKKSARIVGEVIGKLHP 88
             + KSAR+VGEV+GKLHP
Sbjct: 73 DRPYMKSARVVGEVMGKLHP 92


>gi|98990340|gb|ABF60239.1| DNA gyrase subunit A [Entomoplasma freundtii]
          Length = 88

 Score =  143 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 1/87 (1%)

Query: 1  MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
          M  DN           ++ + +   + + +L YA+S I  RA+PDL+DG KPV RRII+A
Sbjct: 3  MSEDN-KELKPFNHGKIEPIDIAAEIRKDFLEYAMSVIVSRALPDLKDGLKPVQRRIIYA 61

Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLH 87
          M ++G+      KKSARIVGEVIGK H
Sbjct: 62 MDDLGITADKPHKKSARIVGEVIGKYH 88


>gi|284192199|gb|ADB82819.1| topoisomerase IV subunit A [Coxiella burnetii]
          Length = 76

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/76 (55%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
            RRI++AMSE+GL   A +KKSAR VG V+GK HPHGD + Y+++V +AQPF  RYP + 
Sbjct: 1   QRRIVYAMSELGLKSTAKYKKSARTVGNVLGKFHPHGDIACYEAMVLMAQPFSFRYPFVD 60

Query: 114 GQGNFGNIDG-DSAAA 128
           GQ N+G+ D   S AA
Sbjct: 61  GQSNWGSADDPKSFAA 76


>gi|262411034|gb|ACY66883.1| GyrA [Salmonella enterica]
          Length = 64

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/64 (65%), Positives = 55/64 (85%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYDS+VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSIVRMAQPF 60

Query: 106 VQRY 109
             RY
Sbjct: 61  SLRY 64


>gi|60651696|gb|AAX32859.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/61 (63%), Positives = 49/61 (80%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVY ++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDNSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 Y 131
           Y
Sbjct: 61  Y 61


>gi|325668272|gb|ADZ44580.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 50/59 (84%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   VVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|506869|dbj|BAA03133.1| DNA topoisomerase IIB [Rattus norvegicus]
          Length = 214

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 95/233 (40%), Gaps = 25/233 (10%)

Query: 76  ARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAY 129
           A++ G V  +   H HG+Q++  ++V LAQ F       L+   G FG     G  AA+ 
Sbjct: 1   AQLAGSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASP 59

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RY    ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A 
Sbjct: 60  RYIFTMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWAC 118

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            +P+++ +EI +    +++  +            P  P       + + +      G+  
Sbjct: 119 KLPNYDAREIVDNVRRMLEGLDPH----------PMLPNYKNFKGTIQEL------GQNQ 162

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           + V     V +        +      QV K +++E +      K   L+ D +
Sbjct: 163 YAVSGEIFVVDRNTVETTELPVRTWTQVYKEQVLEPMLN-GTDKTPALISDYK 214


>gi|115534553|ref|NP_503483.2| hypothetical protein Y46H3C.4 [Caenorhabditis elegans]
 gi|103472086|gb|AAF60626.2| Hypothetical protein Y46H3C.4 [Caenorhabditis elegans]
          Length = 616

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDS 97
           ER+IP L DGFKP  R+++ A  +          K A++ G V  +   H HG+QS+  +
Sbjct: 79  ERSIPCLVDGFKPGQRKVLFACFK---RSDKHGVKVAQLAGGVADMSAYH-HGEQSLMTT 134

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +V LAQ +                 G  +A+ +Y   +++ V   +    D++ + F   
Sbjct: 135 IVHLAQDY----------------GGKDSASAQYIFTQLSPVTRTLFPSHDDNVLRFL-- 176

Query: 158 YNEEDSE-PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
           Y E     P  +    P +L NG  GI  G  T+IP++N +E+ +    LI         
Sbjct: 177 YEENQRIEPEWYCPISPMVLVNGAQGIDTGWRTNIPNYNPRELVKNIKRLIAGEPQKALA 236

Query: 217 LL 218
             
Sbjct: 237 PW 238


>gi|148645150|gb|ABR01099.1| GyrA [uncultured Geobacter sp.]
          Length = 131

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 3/116 (2%)

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              + +   +K+  V    G   V +   N K + F    +  +SR  +GVR  S     
Sbjct: 1   IIAVNLDEGDKLIAVALTDGKQDVLLATSNGKSIRFKESDVRTVSRVSRGVRGMSLDADD 60

Query: 697 IS-DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +   +       G T        + +           RGG G +  K   R+G  +
Sbjct: 61  VVIGMEIINDMSGSTLFTVTENGFGKRTELSEYRCQSRGGKGIITIKTTERNGCVV 116



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 8/128 (6%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK 651
           ++L+    ++   + D    +L+ +S G +   +ES++   +R  +G   + + +++ + 
Sbjct: 4   VNLDEGDKLIAVALTDGKQDVLLATSNGKSIRFKESDVRTVSRVSRGVRGMSLDADDVVI 63

Query: 652 LVVKVT---GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS--YKDGGISDVICFKI 705
            +  +    G  +  V EN       + +    SR GKG+       ++G + D++    
Sbjct: 64  GMEIINDMSGSTLFTVTENGFGKRTELSEYRCQSRGGKGIITIKTTERNGCVVDIMQVND 123

Query: 706 CEGLTWID 713
              L  I 
Sbjct: 124 ENDLMLIT 131



 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKL 614
                 +LL +++GK+      ++ +       ++ +  L+ +  ++   + +      L
Sbjct: 18  TDGKQDVLLATSNGKSIRFKESDVRTVSRVSRGVRGM-SLDADDVVIGMEIINDMSGSTL 76

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVG 665
             V+  G     E SE    +R GK  + + + E+   +  +++V  +  + ++ 
Sbjct: 77  FTVTENGFGKRTELSEYRCQSRGGKGIITIKTTERNGCVVDIMQVNDENDLMLIT 131


>gi|409090|dbj|BAA03132.1| DNA topoisomerase IIA [Rattus norvegicus]
          Length = 214

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 94/236 (39%), Gaps = 31/236 (13%)

Query: 76  ARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAY 129
           A++ G V  +   H HG+ S+  +++ LAQ F       L+   G FG     G  +A+ 
Sbjct: 1   AQLAGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASP 59

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G + 
Sbjct: 60  RYIFTMLSPLARLLFPSKDDHTLRFLYD-DNQRVEPEWYILIIPMVLINGAEGIGTGWSC 118

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP+ +V+E+      L+D  E            P  P+      + E +          
Sbjct: 119 KIPNFDVREVVNNIRRLLDGEEPL----------PMLPSYKNYKGTIEELAS------NQ 162

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIR 302
           + +     +      S  I +TE+P +       E++ E +     K  PL+ D R
Sbjct: 163 YVINGEVAIL----NSTTIEITELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYR 214


>gi|308445279|gb|ADO32825.1| ParC [Neisseria gonorrhoeae]
 gi|308445287|gb|ADO32829.1| ParC [Neisseria gonorrhoeae]
 gi|308445293|gb|ADO32832.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/60 (68%), Positives = 49/60 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|312192213|gb|ADQ43803.1| DNA gyrase subunit A [Aerococcus urinae]
          Length = 64

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++ M+E+G+     +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G G
Sbjct: 1   ILYGMNELGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHG 60

Query: 117 NFGN 120
           NFG+
Sbjct: 61  NFGS 64


>gi|325668260|gb|ADZ44574.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668262|gb|ADZ44575.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 59

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 51/59 (86%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   VVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|60651674|gb|AAX32848.1| GyrA [Riemerella anatipestifer]
          Length = 60

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/58 (68%), Positives = 49/58 (84%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   KSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 59


>gi|4928199|gb|AAD33460.1|AF129761_1 DNA topoisomerase IV subunit C [Streptococcus constellatus]
          Length = 74

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 52/72 (72%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA
Sbjct: 1   DKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAA 60

Query: 129 YRYTEARMTQVA 140
            RYTEAR++++A
Sbjct: 61  MRYTEARLSEIA 72


>gi|325515303|gb|ADZ24285.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668264|gb|ADZ44576.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg]
 gi|325668266|gb|ADZ44577.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg]
          Length = 59

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/59 (71%), Positives = 51/59 (86%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   VVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|1498005|gb|AAB06319.1| DNA gyrase A subunit [Campylobacter coli]
          Length = 60

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/60 (75%), Positives = 51/60 (85%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD AAA R
Sbjct: 1   AYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGAAAMR 60


>gi|308445285|gb|ADO32828.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/60 (68%), Positives = 48/60 (80%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD S Y ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDSSAYGAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|321470330|gb|EFX81307.1| hypothetical protein DAPPUDRAFT_317722 [Daphnia pulex]
          Length = 591

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 66/436 (15%), Positives = 143/436 (32%), Gaps = 31/436 (7%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLV 99
           +IP + DG +P  R+++    +          +  ++ G V         G+ S+  +++
Sbjct: 6   SIPSVMDGLRPTQRKVLFTCFKRN---DKDKVEVIKLAGSVAADSAYRE-GEASLMGTII 61

Query: 100 RLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ F       L+   G FG     G  AA+ RY    ++++A  I    D+  +  +
Sbjct: 62  GLAQDFVGSNNLNLLVPIGEFGTRHEGGKDAASSRYLSTVLSELARFIFHPSDDPLLKHQ 121

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
              + E+ EP  +    P +L NGTSGI  G        N + I +     +D  +    
Sbjct: 122 ID-SNEEIEPESYVPIIPMILINGTSGIGTGGMIDFLKFNPRHIVDFLKQKLDGKQPLPI 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
            L        +  G           +    G        +  + E+  G W         
Sbjct: 181 NL--------WLKGFTGKIEGSGDNQYTSSGNYAVLSSTQVEITELPFGVW--------T 224

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
              K  +IEK+      +  PL+ D ++    +        + +       E ++    +
Sbjct: 225 HNYKISVIEKLLR-GSEEMSPLITDFQEHHTGNTVKFTVTMSEAKMRQAKDEGLYKAFQL 283

Query: 336 E-TRFPLNMNVLSMGRVPQVMPLDGIL--KEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           + T +  +M +      P++      +    +    +    R++ F         ++   
Sbjct: 284 QSTHYITSMVLCDPSGSPKIYYSYQQILEDFYPVRLKLYEKRKNYFSGYLQAISKKLSNQ 343

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                  ID+++ +    +  +   +   +   + V        R +   +  ++++   
Sbjct: 344 FRFVCEVIDDVLIVFNKGNILEVEDLRHRNYDPDPVSVWKRTNNRKVTDEDAGEVQTGDY 403

Query: 453 NLLAEKEKIDSLLNSG 468
           N L             
Sbjct: 404 NYLLHMFDFSLDSKQK 419


>gi|148645148|gb|ABR01098.1| GyrA [uncultured Geobacter sp.]
          Length = 132

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 4/117 (3%)

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              + +   +K+  V    G   V +  +N K + F  + +  + R  +GVR    +D  
Sbjct: 1   IIAVNLDEGDKLISVALTDGRQDVLLASKNGKSIRFKEEDVRTVGRVSRGVRGMMLEDDD 60

Query: 697 ISDVICFKICE--GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +   +          T        Y +           RGG G +  K   R+G  +
Sbjct: 61  VVIGMAILNEHFTDSTLFTVTENGYGKRTEIAEYRCQTRGGKGIITIKTTERNGCVV 117



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 50/129 (38%), Gaps = 9/129 (6%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK 651
           ++L+    +++  + D    +L+ S  G +   +E ++    R  +G   + +  ++ + 
Sbjct: 4   VNLDEGDKLISVALTDGRQDVLLASKNGKSIRFKEEDVRTVGRVSRGVRGMMLEDDDVVI 63

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS--YKDGGISDVICFK 704
            +  +    T   +  V EN       I +    +R GKG+       ++G + D+    
Sbjct: 64  GMAILNEHFTDSTLFTVTENGYGKRTEIAEYRCQTRGGKGIITIKTTERNGCVVDIKQVN 123

Query: 705 ICEGLTWID 713
               L  I 
Sbjct: 124 DDNDLMLIT 132



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCK 613
                 +LL S +GK+      ++ +       ++ ++ L  +  ++   + +       
Sbjct: 18  TDGRQDVLLASKNGKSIRFKEEDVRTVGRVSRGVRGMM-LEDDDVVIGMAILNEHFTDST 76

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVG 665
           L  V+  G     E +E    TR GK  + + + E+   +  + +V  D  + ++ 
Sbjct: 77  LFTVTENGYGKRTEIAEYRCQTRGGKGIITIKTTERNGCVVDIKQVNDDNDLMLIT 132


>gi|4928191|gb|AAD33456.1|AF129757_1 DNA topoisomerase IV subunit C [Streptococcus oralis ATCC 35037]
 gi|4928195|gb|AAD33458.1|AF129759_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|4928197|gb|AAD33459.1|AF129760_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
          Length = 74

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 53/72 (73%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA
Sbjct: 1   DKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAA 60

Query: 129 YRYTEARMTQVA 140
            RYTEAR++++A
Sbjct: 61  MRYTEARLSEIA 72


>gi|213027129|ref|ZP_03341576.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 210

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 88/197 (44%), Gaps = 11/197 (5%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++ + T G++Y +    L S RG GE +   + L     +    +     KLL+ S  G 
Sbjct: 1   MVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGY 60

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPE 680
            F+   ++++A  R GKT + +     +   + +  +H  +  + +  ++L+F +D +P+
Sbjct: 61  GFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQ 120

Query: 681 MSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +S+GKG ++ +         D G++ +        LT      R       +L   +G+R
Sbjct: 121 LSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI-HVGKRKIKLRPEELQKVVGER 179

Query: 734 GGVGSLVPKGFPRSGKF 750
           G  G+ + +G  R  + 
Sbjct: 180 GRRGT-LMRGLQRIDRI 195


>gi|2501246|sp|Q49608|GYRA_MYCKA RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mka
           gyrA intein
 gi|1122294|emb|CAA92431.1| DNA gyrase subunit A [Mycobacterium kansasii]
          Length = 549

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 43/65 (66%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+      
Sbjct: 1   RPARSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNVPP 60

Query: 127 AAYRY 131
           AA RY
Sbjct: 61  AAMRY 65



 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/64 (59%), Positives = 48/64 (75%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 486 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 545

Query: 192 PSHN 195
           P HN
Sbjct: 546 PPHN 549


>gi|32813238|emb|CAE11801.1| topoisomerase II [Leishmania panamensis]
          Length = 345

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 11/133 (8%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N  ++ +V+ VS R  +++  + ++++   ER+IP   DGFKP  R+I+ +  +  L 
Sbjct: 218 NVNESMDYSVRQVSYRDFVDKELILFSIAD-CERSIPSAIDGFKPGQRKILFSCFKRNLV 276

Query: 68  FGAAFKKSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                 K  ++ G V      H HG+QS+  ++V +AQ F      PL+   G FG    
Sbjct: 277 NS---IKVVQLAGYVSEHSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLH 332

Query: 122 DGDSAAAYRYTEA 134
            G   AA RY   
Sbjct: 333 GGKDHAAPRYIFT 345


>gi|325668270|gb|ADZ44579.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 50/59 (84%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   VVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|3152658|gb|AAC17107.1| topoisomerase IV subunit A [Citrobacter freundii]
          Length = 69

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G 
Sbjct: 1   MSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 121 IDG-DSAAA 128
            D   S AA
Sbjct: 61  PDNPKSFAA 69


>gi|28916606|gb|AAO59536.1| gyrase A [Bacillus mojavensis]
          Length = 197

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 85/198 (42%), Positives = 129/198 (65%), Gaps = 1/198 (0%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D +D++DTY   + EPVV PS+FPNLL NG +GIA GMAT+IP H + EI +  LA  +
Sbjct: 1   KDTIDYQDTYEGPEREPVVMPSRFPNLLVNGAAGIAAGMATNIPPHQLGEIIDGVLAGGE 60

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N +I+I +++ +I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I
Sbjct: 61  NKDITIPEVMAFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERI 119

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++  
Sbjct: 120 LVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNH 179

Query: 329 IFMLSDMETRFPLNMNVL 346
           ++  + ++T F +NM  L
Sbjct: 180 LYKQTALQTSFGINMLAL 197


>gi|308445289|gb|ADO32830.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/60 (68%), Positives = 49/60 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDNSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|1017803|gb|AAA79196.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 63

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/63 (60%), Positives = 49/63 (77%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA
Sbjct: 1   DKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAA 60

Query: 129 YRY 131
            RY
Sbjct: 61  QRY 63


>gi|308445281|gb|ADO32826.1| ParC [Neisseria gonorrhoeae]
 gi|308445283|gb|ADO32827.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 49/60 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHG+ S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGNSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|8248317|gb|AAF74140.1|AF246721_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248319|gb|AAF74141.1|AF246722_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248321|gb|AAF74142.1|AF246723_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248323|gb|AAF74143.1|AF246724_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248327|gb|AAF74145.1|AF246726_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248331|gb|AAF74147.1|AF246728_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248333|gb|AAF74148.1|AF246729_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 52/72 (72%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEIAGYLLQDI 72


>gi|308445277|gb|ADO32824.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/60 (68%), Positives = 50/60 (83%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD+S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|224458678|gb|ACN43202.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 269

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 94/271 (34%), Positives = 166/271 (61%), Gaps = 5/271 (1%)

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A+ +N +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G
Sbjct: 1   AVSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSG 59

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +
Sbjct: 60  KERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHV 119

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++T F +NM  L     P+V+ L   L  +L H++ V+ RR+++ ++  +
Sbjct: 120 ILNNLYKQTALQTSFGINMLALVD-GEPKVLNLKQCLVHYLDHQKVVIRRRTAYELRKAE 178

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL IA  ++D +I++IR+       +  ++ +FSLTE Q  AIL++RL+ L  
Sbjct: 179 ARAHILEGLRIALDHLDAVISLIRSSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTG 238

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           LE  +I+ E  +L+    ++  +L + ++  
Sbjct: 239 LEREKIEEEYQSLIKLIAELKEILANEEKVL 269


>gi|4928193|gb|AAD33457.1|AF129758_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis SK1]
          Length = 74

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 52/72 (72%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA
Sbjct: 1   DKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAA 60

Query: 129 YRYTEARMTQVA 140
            RYTEAR++++A
Sbjct: 61  MRYTEARLSEMA 72


>gi|60101258|gb|AAX13707.1| GyrA [Riemerella anatipestifer]
          Length = 57

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/56 (67%), Positives = 48/56 (85%)

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           VG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RYTEA
Sbjct: 1   VGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEA 56


>gi|116282956|gb|ABJ97453.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 61

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/60 (65%), Positives = 48/60 (80%)

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD+S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L 
Sbjct: 1   YHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLS 60


>gi|308445291|gb|ADO32831.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD S Y+++ R+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDSSAYEAMGRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|326804513|ref|YP_004327384.1| hypothetical protein Vi01_013 [Salmonella phage Vi01]
 gi|301795163|emb|CBW37881.1| Topoisomerase IIM [Salmonella phage Vi01]
          Length = 467

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 87/463 (18%), Positives = 164/463 (35%), Gaps = 56/463 (12%)

Query: 18  KAVSLRFALEERYLAYALSTIKE-RAIPDLRDGFKPVHRRIIHAMSE---------MGLD 67
           +++++   +   +   A S     R IP L D  KP  R+I+    E         +G+ 
Sbjct: 28  QSINVTDYVNNDHK--AFSVFNSIRQIPQLIDSLKPSQRKILFTALEYGKEEIVDRLGMF 85

Query: 68  FGAAFK-KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNIDGD 124
             A    KS    GE +G            ++V +AQ F      P     G FG+I G 
Sbjct: 86  AAARTNYKSG---GENMGN-----------TIVNMAQAFPGTNNIPYFDRDGQFGSIMGR 131

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGI 183
            A++ RY    ++ V   I +  DE  +D+   Y  E+  EP  F    P  L NG +GI
Sbjct: 132 DASSARYISVSVSDVIRKIFRKEDEGILDY--NYLGEEQLEPKFFLPVIPMFLVNGINGI 189

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G +T  P H V+ +  A  AL              + G D           +      
Sbjct: 190 GSGYSTDTPCHCVKSVLSALRAL--------------LRGEDPTDLKPYWNGYKGETGYT 235

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY-QVQKSRLIEKIAELIIAKRIPLLEDIR 302
             G      RA          +  + +TE+P     KS   + +  L  A  +    +  
Sbjct: 236 EEG------RAYSRGIFKRINATTLHITEVPIGWFAKSYETKVLLPLYKAGLLTEYANDT 289

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            E  +   I +  K   L      +   M        P+       G + +      +L 
Sbjct: 290 TE--DGWDITVVFKRGELSKLDDAQIEQMFKLYSANKPVWTAWDEDGVIRRYSGWKEMLL 347

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            +  +R      R  + ++ +  ++  L    +       +  + R+  + K +  + + 
Sbjct: 348 SFFNYRLIRYEDRRQYLLKEMTDKIHRLNNRALFIS-WAVVTDMRRSITELKALFQTDYP 406

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
             +  +D +  + L S+      ++ +++ NL  ++E++++  
Sbjct: 407 DFDGDLDELFKMSLSSITLDARERLLNQIKNLEEQREELNNKQ 449


>gi|224458690|gb|ACN43208.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|224458694|gb|ACN43210.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 67  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN     
Sbjct: 126 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELTEIKERFNDE-----RRTEIV 269


>gi|313192278|emb|CBY05947.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 108

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 46/61 (75%)

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 47  RMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 106

Query: 160 E 160
            
Sbjct: 107 G 107


>gi|224458692|gb|ACN43209.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 67  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN     
Sbjct: 126 LNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELTEIKERFNDE-----RRTEIV 269


>gi|8248335|gb|AAF74149.1|AF246730_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248343|gb|AAF74153.1|AF246734_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248349|gb|AAF74156.1|AF246737_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 52/72 (72%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYNAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEIAGYLLQDI 72


>gi|215480285|gb|ACJ67487.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480289|gb|ACJ67489.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480301|gb|ACJ67495.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480303|gb|ACJ67496.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480307|gb|ACJ67498.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480309|gb|ACJ67499.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480345|gb|ACJ67517.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480357|gb|ACJ67523.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480359|gb|ACJ67524.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 67  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 126 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELTEIKERFNDE-----RRTEIV 269


>gi|260890949|ref|ZP_05902212.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
 gi|260859502|gb|EEX74002.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
          Length = 196

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 8/129 (6%)

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSRGK-G 686
                + GK  +K++ ++++  +   +G   D V     N   + FS   +  M  G  G
Sbjct: 2   FDNIKKAGKRAIKLNDDDEVMYIGLTSGTSEDEVFAATRNGIAIRFSEKDVRSMGTGAAG 61

Query: 687 VRLQSYKDGGISDVICFKICE----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           V+  + +D            E     +  +      Y +        L  RGG G +  K
Sbjct: 62  VKGITLRDKDKIVGAAIINSEMNNDEMRILTITEEGYGKRTKLSEYRLTSRGGKGIINAK 121

Query: 743 GFPRSGKFL 751
              ++GK +
Sbjct: 122 LNDKTGKIV 130



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 12/193 (6%)

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
              ++K        L+  +           + D +   + +G A      ++ S      
Sbjct: 1   MFDNIKKAGKRAIKLNDDDEVMYIGLTSGTSEDEVFAATRNGIAIRFSEKDVRSMGTGA- 59

Query: 589 AIQLLIDLNHNQDIVTAFVYD-----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           A    I L     IV A + +        ++L ++ +G     + SE    +R GK  + 
Sbjct: 60  AGVKGITLRDKDKIVGAAIINSEMNNDEMRILTITEEGYGKRTKLSEYRLTSRGGKGIIN 119

Query: 644 VSSEE---KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGI 697
               +   K+  V  VT  D + ++     L+  S++ +  + R   GVR+   + +  I
Sbjct: 120 AKLNDKTGKIVDVKIVTENDEIMLITSEGTLIRTSVNNVSVIGRSASGVRIMKVRNNEKI 179

Query: 698 SDVICFKICEGLT 710
           + V+       L+
Sbjct: 180 ASVVKITEEPELS 192


>gi|215480283|gb|ACJ67486.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480287|gb|ACJ67488.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480293|gb|ACJ67491.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480295|gb|ACJ67492.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480297|gb|ACJ67493.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480299|gb|ACJ67494.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480305|gb|ACJ67497.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480343|gb|ACJ67516.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480351|gb|ACJ67520.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480355|gb|ACJ67522.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 274

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 6   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 65

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 66  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKV 124

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 125 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 184

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 185 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 244

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 245 LEIIREELTEIKERFNDE-----RRTEIV 268


>gi|308445273|gb|ADO32822.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 49/60 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD+  Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDRPAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|8248325|gb|AAF74144.1|AF246725_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
          Length = 72

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 52/72 (72%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDISIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEIAGYLLQDI 72


>gi|215480291|gb|ACJ67490.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480347|gb|ACJ67518.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480349|gb|ACJ67519.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480353|gb|ACJ67521.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 273

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 5   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 64

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 65  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKV 123

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 124 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 183

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 184 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 243

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 244 LEIIREELTEIKERFNDE-----RRTEIV 267


>gi|224458670|gb|ACN43198.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 260

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 91/262 (34%), Positives = 159/262 (60%), Gaps = 5/262 (1%)

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+
Sbjct: 1   IQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTEL 59

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  +
Sbjct: 60  PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 119

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            ++T F +NM  L     P+V+ L   L  +L H++ V+ RR+++ ++  + R  IL+GL
Sbjct: 120 ALQTSFGINMLALVD-GEPKVLNLKQCLVHYLDHQKVVIRRRTAYELRKAEARAHILEGL 178

Query: 394 LIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
            IA  ++D +I++IR+       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E
Sbjct: 179 RIALDHLDAVISLIRSSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEE 238

Query: 451 LDNLLAEKEKIDSLLNSGKQQW 472
             +L+    ++  +L + ++  
Sbjct: 239 YQSLIKLIAELKEILANEEKVL 260


>gi|8248341|gb|AAF74152.1|AF246733_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248345|gb|AAF74154.1|AF246735_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248347|gb|AAF74155.1|AF246736_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 52/72 (72%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEIAGYLLQDI 72


>gi|10281014|dbj|BAB13748.1| type II DNA topoisomerase [Issatchenkia orientalis]
          Length = 804

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 12/165 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  +  + +   + +  + ++++    R+I  + DGFKPV R+I++A  +  L  
Sbjct: 646 PGTYLDSTLSDIPISEFINKELILFSMADNV-RSIASVMDGFKPVQRKILYACYKRNLRD 704

Query: 69  GAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                K +++ G +      H HGD S+  S++ LAQ F       L+   G FG+    
Sbjct: 705 E---IKVSQLEGYIAEHTGYH-HGDASLMQSIIGLAQDFVGSNNINLLVPHGGFGSRAAG 760

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           G  AAA RY    ++ +   I   +D   + +    +E+  EP  
Sbjct: 761 GKDAAAARYIFTELSAITRKIFNPLDNPLLTYVQD-DEQTVEPEW 804


>gi|224458676|gb|ACN43201.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      V+    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 67  IEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 126 LNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELTEIKERFNDE-----RRTEIV 269


>gi|308445295|gb|ADO32833.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HP GD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPRGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|8248355|gb|AAF74159.1|AF246740_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis]
          Length = 72

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 52/72 (72%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEMAGYLLQDI 72


>gi|8248329|gb|AAF74146.1|AF246727_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 53/72 (73%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD+S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEIAGYLLQDI 72


>gi|87240782|gb|ABD32640.1| WD40-like [Medicago truncatula]
          Length = 398

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 102/311 (32%), Gaps = 42/311 (13%)

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  E  ++K  F+       RR+   +        +   +I  E + + +S +G
Sbjct: 10  DSSIQVIEQEAIDLKNKFASP-----RRSILEDTDDGQLEDID--VIPNEEMLLTLSEKG 62

Query: 529 WIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +++ +K          ++  S    K  DS+   +     D +L  S  G  Y+  A  +
Sbjct: 63  YLKRMKPSTFNLQHRGTIGKSVGKLKMNDSMSDFIVCRAHDFVLYFSDKGTVYSARAYKI 122

Query: 581 LSGRGH--GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
                   G  +  ++ L+  + I +      +     LL+++ +G    V  +   +  
Sbjct: 123 PECSRTASGTPLVQILSLSDGERITSIIPVSEFTDDQFLLMLTMQGYIKRVPLNSFSSIR 182

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
             G   +++   +++K V   T D  VA+   N  +++    QI  + R  +G      K
Sbjct: 183 SSGIIAIQLVPGDELKWVRCCTNDDFVAMASHNGMVILSLCIQIRTLGRNTRGALAMRLK 242

Query: 694 DGGISDVICFKIC--------------------EGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +G     +                         +G   +  +   + +        +   
Sbjct: 243 EGDRMASVDIIPAAMWNNLETISKLPESNGKSYDGPWLLFISESGHGKRVPLSRFRMSSL 302

Query: 734 GGVGSLVPKGF 744
             VG +  K  
Sbjct: 303 NRVGLIGYKFS 313



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 13/111 (11%)

Query: 610 STCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKV---------TG 658
               LL +S  G+   V  S     +  R G    K S+E+++  V  V         + 
Sbjct: 276 DGPWLLFISESGHGKRVPLSRFRMSSLNRVGLIGYKFSAEDRLAAVFVVGFTLAEDGESD 335

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICE 707
           + V +V ++  +    +  I   SR  +GV L      G I         E
Sbjct: 336 EQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLDHAGKIQTASLISATE 386


>gi|215480321|gb|ACJ67505.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480333|gb|ACJ67511.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 276

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 67  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 126 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELTEIKERFNDE-----RRTEIV 269


>gi|224458696|gb|ACN43211.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 67  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 126 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELMEIKERFNDE-----RRTEIV 269


>gi|215480327|gb|ACJ67508.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 273

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 4   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 63

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 64  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKV 122

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 123 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 182

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 183 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 242

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 243 LEIIREELTEIKERFNDE-----RRTEIV 266


>gi|215480323|gb|ACJ67506.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480325|gb|ACJ67507.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480337|gb|ACJ67513.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 6   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 65

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 66  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKV 124

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 125 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 184

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 185 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 244

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 245 LEIIREELTEIKERFNDE-----RRTEIV 268


>gi|215480339|gb|ACJ67514.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 274

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 5   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 64

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 65  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKV 123

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 124 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 183

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 184 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 243

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 244 LEIIREELTEIKERFNDE-----RRTEIV 267


>gi|215480329|gb|ACJ67509.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 5   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 64

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 65  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKV 123

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 124 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 183

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 184 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 243

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 244 LEIIREELTEIKERFNDE-----RRTEIV 267


>gi|284027743|gb|ADB66698.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 81

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/79 (59%), Positives = 61/79 (77%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+    ++  A +KSAR+VG+VIGK +PHGD +VYD++V +AQPF QRY L+ GQGNF
Sbjct: 3   YAMNIKANEWNEAKEKSARVVGDVIGKYNPHGDFAVYDNIVLMAQPFSQRYMLVDGQGNF 62

Query: 119 GNIDGDSAAAYRYTEARMT 137
           G IDGDSAAA R TE R+ 
Sbjct: 63  GCIDGDSAAAVRKTELRLA 81


>gi|8248339|gb|AAF74151.1|AF246732_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248351|gb|AAF74157.1|AF246738_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 52/72 (72%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEIAGYLLQDI 72


>gi|308235539|ref|ZP_07666276.1| DNA gyrase subunit A [Gardnerella vaginalis ATCC 14018]
          Length = 245

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 53/167 (31%), Gaps = 12/167 (7%)

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-------SSEEKMK 651
            Q +++   YD    L++ +  G        E  +  + G   +++          +++ 
Sbjct: 1   MQAVLSIPNYDVAKYLVLATRSGKVKKTALQEYDSPRQGGLIAVRLMTNEETGEPADELI 60

Query: 652 LVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG-ISDVICFKIC 706
                   D + +V +    L F  D   +  M R   GV+   +++   + D+    + 
Sbjct: 61  GAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTAGVQGMRFREDDELLDMDVVSVE 120

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +      + +        L  R G G    +     G  + +
Sbjct: 121 TSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGA 167


>gi|18481444|gb|AAL73447.1|AF435418_1 DNA topoisomerase IV subunit C [Aeromonas caviae]
 gi|18481448|gb|AAL73449.1|AF435420_1 DNA topoisomerase IV subunit C [Aeromonas sobria]
 gi|298104542|gb|ADI55011.1| DNA topoisomerase IV subunit C [Aeromonas caviae]
          Length = 68

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/64 (57%), Positives = 48/64 (75%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AMSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 120 NIDG 123
             D 
Sbjct: 61  APDD 64


>gi|91093533|gb|ABE11588.1| ParC [Escherichia coli]
          Length = 68

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 50/68 (73%), Gaps = 1/68 (1%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAEL 142
           GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL
Sbjct: 1   GKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSEL 60

Query: 143 ILQGVDED 150
           +L  + + 
Sbjct: 61  LLSELGQG 68


>gi|112383322|gb|ABI17801.1| topoisomerase IV [Streptococcus suis]
 gi|112383324|gb|ABI17802.1| topoisomerase IV [Streptococcus suis]
 gi|112383326|gb|ABI17803.1| topoisomerase IV [Streptococcus suis]
 gi|112383328|gb|ABI17804.1| topoisomerase IV [Streptococcus suis]
 gi|112383330|gb|ABI17805.1| topoisomerase IV [Streptococcus suis]
 gi|112383332|gb|ABI17806.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 50/72 (69%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A
Sbjct: 1   NIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 141 ELILQGVDEDAV 152
             +L  +++  V
Sbjct: 61  GYLLADIEKKTV 72


>gi|215480319|gb|ACJ67504.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480331|gb|ACJ67510.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480335|gb|ACJ67512.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 277

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 6   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 65

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 66  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKV 124

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 125 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 184

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 185 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 244

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 245 LEIIREELTEIKERFNDE-----RRTEIV 268


>gi|8248337|gb|AAF74150.1|AF246731_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 51/72 (70%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYHAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEIAGYLLQDI 72


>gi|255570740|ref|XP_002526324.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
 gi|223534351|gb|EEF36060.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
          Length = 433

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 111/332 (33%), Gaps = 27/332 (8%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L+  +  +E   L+ +  +++ LL+S       I  E  E+K  F+         +  
Sbjct: 1   MLLQRKKFVNESKLLMEQISRLEELLSSRHNILQLIEQEAVELKNKFASPRRSSLEDSDG 60

Query: 500 CEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
            ++   D    ++ ++   E   V              ++  S    +  D++  ++   
Sbjct: 61  SQLDDIDVVPNEEMLLAFSEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDSIVCR 120

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDS---TCK 613
             D +L  S  G  Y+  A  +        G  +  ++ L+  + I +            
Sbjct: 121 AHDHVLYFSDLGIVYSARAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSEFSGDQF 180

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLI 672
           LL+++  G    V  +   A    G   +++   +++K V   T +  VA+   N  +++
Sbjct: 181 LLMLTVNGYIKKVPLNLFSAIRSTGIIAIQLVPGDELKWVRCCTNNDLVAMASLNGMVIL 240

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGI---SDVICFKICEGLT----------------WI 712
            S + I  +SR  +G      K G      D+I   + + L                  +
Sbjct: 241 SSCENIRALSRNTRGGVAMRLKGGDKMASMDIIPVAMRKDLERVLEDPRSNSKGSGPWLL 300

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             +   Y +        L     VG +  K  
Sbjct: 301 FVSENGYGKRVPLSSFRLSPLNRVGLIGYKFS 332



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 614 LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVA 662
           LL VS  G    V  S        R G    K S+E+++  V  V         + + V 
Sbjct: 299 LLFVSENGYGKRVPLSSFRLSPLNRVGLIGYKFSAEDQLAAVFVVGFTLAEDGESDEQVV 358

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +V ++  +    +  I   SR  +GV L   +  G       
Sbjct: 359 LVSQSGTVNRIKVQDISIQSRFARGVILMRLEQAGKIQSASL 400


>gi|224458680|gb|ACN43203.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|224458684|gb|ACN43205.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 67  IEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQTSFGINLLALVD-GQPKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 126 LNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIGELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELTEIKERFNDE-----RRTEIV 269


>gi|215480341|gb|ACJ67515.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 276

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 67  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 126 LTLKKCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELTEIKERFNDE-----RRTEIV 269


>gi|215480317|gb|ACJ67503.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 154/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 4   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 63

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V
Sbjct: 64  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAVQTSFGINLLALVD-GQPKV 122

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 123 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 182

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 183 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 242

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 243 LEIIREELTEIKERFNDE-----RRTEIV 266


>gi|315286960|ref|ZP_07872182.1| DNA gyrase subunit A [Listeria ivanovii FSL F6-596]
 gi|313630887|gb|EFR98581.1| DNA gyrase subunit A [Listeria ivanovii FSL F6-596]
          Length = 75

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 51/73 (69%)

Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3  ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71 AFKKSARIVGEVI 83
          A+KKSARIVGEVI
Sbjct: 63 AYKKSARIVGEVI 75


>gi|108711710|gb|ABF99505.1| DNA gyrase subunit A, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215765245|dbj|BAG86942.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 356

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 78/248 (31%), Gaps = 22/248 (8%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            E   V              ++  S    +  D+    +   T D +L  S  G  Y+  
Sbjct: 6   SEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSAR 65

Query: 577 AGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEI 631
           A  +        G  +  L+ L+  + I +    +       L++++  G    V  +  
Sbjct: 66  AYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNEFGEDQYLVMLTVNGYIKKVPLNAF 125

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            A    G   ++++  +++K V +   D  VA+  +N  +++ + +++  + R  +GV  
Sbjct: 126 SAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLA 185

Query: 690 QSYKDGGISDVICFKICEGLT---------------WIDSAGRSYNRSENDLLGWLGKRG 734
              K+G     +                         +  A     +         G   
Sbjct: 186 MKLKEGDKMASMDIIPATSHNMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFN 245

Query: 735 GVGSLVPK 742
            VG    K
Sbjct: 246 RVGLQGYK 253



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 21/124 (16%)

Query: 614 LLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVA 662
           LL ++  G    V  +        R G    K+  +  +  V  V         + + V 
Sbjct: 222 LLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVV 281

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK---------ICEGLTWI 712
           +V ++  +    +  I   SR  +GV L   +  G                   E  + I
Sbjct: 282 LVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKIQSASLISAAEEEEEQDPESASLI 341

Query: 713 DSAG 716
             A 
Sbjct: 342 SEAE 345



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKL 670
           LL++S KG    ++ +      R   GK+  K+   +     +   T DHV    +    
Sbjct: 2   LLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKG-- 59

Query: 671 LIFSID--QIPEMSRGK-G---VRLQSYKDGGISDVICFKIC--EGLTWIDSAGRSYNRS 722
           +++S    +IPE +R   G   V+L S  DG     I       E    +      Y + 
Sbjct: 60  IVYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNEFGEDQYLVMLTVNGYIKK 119

Query: 723 ENDLLGWLGKRGGVGSLVPKGFP 745
                    +    G +  +  P
Sbjct: 120 VPLNAFSAIR--TSGIISIQLAP 140


>gi|157890137|dbj|BAF81267.1| topoisomerase IV, A subunit [Pseudomonas putida]
          Length = 68

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 51/67 (76%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AMSE+GLD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQG
Sbjct: 1   IVYAMSELGLDADAKHKKSARTVGDVLGKFHPHGDLACYEAMVLMAQPFSYRYTLVDGQG 60

Query: 117 NFGNIDG 123
           N+G  D 
Sbjct: 61  NWGAPDD 67


>gi|323694737|ref|ZP_08108895.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
 gi|323501174|gb|EGB17078.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
          Length = 412

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 83/425 (19%), Positives = 153/425 (36%), Gaps = 43/425 (10%)

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            +   G  P+ + L GILK +L  + E   R+ +  ++    + EI +GL+ A   ID I
Sbjct: 1   MLAIAGGRPETLTLKGILKNYLDFQYENNTRKYNVLLEKELEKKEIREGLIKACDVIDLI 60

Query: 404 IAIIRNEDKPKPVMVSRFS---------------------LTENQVDAILNLRLRSLRKL 442
           IAI+R     K                              TE Q  AIL +RL  L  L
Sbjct: 61  IAILRGSKNLKDAKACLMEGDISNIHFKTPGFDEDARKLRFTEKQASAILEMRLYKLIGL 120

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E   ++ E    L + ++ + +L+S     + I  ++ E+K  F+       RRT   + 
Sbjct: 121 EILALEKEYKETLRKIKEYEKILSSKLTMDDVIKKDLEEIKTEFATP-----RRTLIEDG 175

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
             A      +  +E   +  V+   G+ + +   + D +             +    TD+
Sbjct: 176 KEA---VYDETAVEIREVVFVMDKFGYGKLVDRATYDRNQET--IEGENPHVIPCLNTDK 230

Query: 563 ILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN-HNQDIVTAFVYDS--TCKLLVV 617
           I L +  G  + + A ++     R  G  +  L   +   +  +      +    +LL  
Sbjct: 231 ICLFTDTGLLHQVKASDIPFGKMRDKGTPVDNLCKFDGTKERPIFIINASALVGRRLLFA 290

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           + +    +V   E   N R      K+   + +  +    G     +   N   L F ++
Sbjct: 291 TKEAMVKLVPGEEFETNNR-MVAATKLQDGDMVVSIQLTDGRTEAVLQTTNGVFLRFDLE 349

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +I  + +  KGVR      G   + +     +    +        +  +     +GKR G
Sbjct: 350 EISTLKKNSKGVRGIKLGRGEELEQVYLLGTDSEQTVMYKE----KQVHLNRLKIGKRDG 405

Query: 736 VGSLV 740
            GS V
Sbjct: 406 KGSKV 410


>gi|224458682|gb|ACN43204.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 268

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 86/268 (32%), Positives = 154/268 (57%), Gaps = 9/268 (3%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I
Sbjct: 1   RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 60

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V+
Sbjct: 61  EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKVL 119

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L   L+ +L H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN      
Sbjct: 120 NLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEI 179

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +  
Sbjct: 180 ARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKVL 239

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFC 500
             I  E+ E+KE F+       RRT   
Sbjct: 240 EIIREELTEIKERFNDE-----RRTEIV 262


>gi|269967411|ref|ZP_06181471.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
 gi|269827999|gb|EEZ82273.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
          Length = 277

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 9/244 (3%)

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             EPITVV+S +GWIR  K H VD   L++K GD         +    + L +DG++Y+L
Sbjct: 17  PSEPITVVLSEKGWIRHAKGHDVDAEGLNYKSGDKYLAHARGKSNQPAVFLGSDGRSYSL 76

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            + +L S R  GE I   +++     I    + +     LV S  G  F+ + +++++  
Sbjct: 77  ESHSLPSARSQGEPITGRLNITAGSSIRQVIMSEEDQLWLVGSDAGYGFVCKGADLLSKN 136

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY 692
           R GK  + + +  ++    ++     D +  +    ++L+F I  +P++++GKG ++ + 
Sbjct: 137 RSGKALVTLPANSEIMTPKEIEDLDSDEILAITNQGRMLLFPIKDLPQLAKGKGNKIINI 196

Query: 693 -----KDGGISDVICFKICEGLTW-IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                K+          + +G +  + +  R      +DL  + G+RG  G L+P+G  R
Sbjct: 197 PAAKAKEREEVLSHLMSLPKGASLTLYAGKRKLGLKPSDLDNFRGERGRRGGLLPRGLQR 256

Query: 747 SGKF 750
             + 
Sbjct: 257 VTRI 260


>gi|4545087|gb|AAD22387.1| DNA gyrase A [Serratia marcescens]
          Length = 60

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MS +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MSVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|112383354|gb|ABI17817.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+++VA
Sbjct: 1   NIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEVA 60

Query: 141 ELILQGVDEDAV 152
             +L  +++  V
Sbjct: 61  GYLLADIEKKTV 72


>gi|112383338|gb|ABI17809.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 51/72 (70%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+++VA
Sbjct: 1   NIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEVA 60

Query: 141 ELILQGVDEDAV 152
             +L+ +++  V
Sbjct: 61  GYLLEDIEKKTV 72


>gi|308445275|gb|ADO32823.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 49/60 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+V E++GK HPHGD+S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVREILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|193794284|gb|ACF21354.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 79/188 (42%), Positives = 119/188 (63%), Gaps = 7/188 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ P++FPNLL NG+ GIAVGMAT IP HN++E+   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 209 NPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+    L+E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+  G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-HG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++    + ++    R     
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAK 178

Query: 324 LLMESIFM 331
           +++ +++ 
Sbjct: 179 VVLNNLYK 186


>gi|225550343|ref|ZP_03771292.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379497|gb|EEH01859.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 426

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 90/418 (21%), Positives = 182/418 (43%), Gaps = 26/418 (6%)

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ME  +      +   R P ++ L   L   + H  +V+ +   + +  +  R+EI++GL+
Sbjct: 1   MEISYNTKFIAIVH-RTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKVLLRIEIVEGLI 59

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                IDEII IIR  D  +         F+ T NQ +AI+ +RL +L + + + +++E 
Sbjct: 60  KCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEW 119

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           ++L  + + +   + S + + N +  ++ E K+ F       R+   F E  +A     +
Sbjct: 120 ESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFG----YQRKTKLFDEFIKA--EVNE 173

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF---KEGDSLKIALHAHTTDRILLLST 568
             MIEK+ + +VIS  G+I+++   S + S       K  D L      ++ DRIL++++
Sbjct: 174 DQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELGLKTNDLLFYHNVINSHDRILIITS 233

Query: 569 DGKAYTLPAGNLLSGRGHG--EAIQLLIDLNHNQDIVTAFVYDS-----TCKLLVVSSKG 621
             K   L A  +   R     E +      + N+ +V  +V +        +L++ S   
Sbjct: 234 KAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVDEHQLVLGSKLN 293

Query: 622 NAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGENRKLLIFSIDQ 677
               +E +E+ +    K  + +K++  + +     +  DH   V  + +   +L+F + +
Sbjct: 294 LIKRIELNELDLNKNSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHE 353

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           I  ++R  KG+++   K       I      G +      +  N+  +     L KR 
Sbjct: 354 INCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQLFLDQG-NKCFSISELKLSKRA 410


>gi|28193545|emb|CAD56005.1| topoisomerase IV [Proteus mirabilis]
          Length = 64

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSA 126
             A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S 
Sbjct: 1   SSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSF 60

Query: 127 AAYR 130
           AA R
Sbjct: 61  AAMR 64


>gi|193794228|gb|ACF21326.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/188 (42%), Positives = 120/188 (63%), Gaps = 7/188 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ P++FPNLL NG+ GIAVGMAT IP HN++E+   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 209 NPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+    L+E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLEALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++    + ++    R     
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAK 178

Query: 324 LLMESIFM 331
           +++ +++ 
Sbjct: 179 VVLNNLYK 186


>gi|193794070|gb|ACF21247.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794156|gb|ACF21290.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794182|gb|ACF21303.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794236|gb|ACF21330.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794248|gb|ACF21336.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794268|gb|ACF21346.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794276|gb|ACF21350.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/188 (42%), Positives = 120/188 (63%), Gaps = 7/188 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ P++FPNLL NG+ GIAVGMAT IP HN++E+   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 209 NPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+    L+E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++    + ++    R     
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAK 178

Query: 324 LLMESIFM 331
           +++ +++ 
Sbjct: 179 VVLNNLYK 186


>gi|218677322|ref|ZP_03525219.1| DNA topoisomerase IV subunit A [Rhizobium etli CIAT 894]
          Length = 78

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
          ++N++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AFK
Sbjct: 8  DDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFK 67

Query: 74 KSARIVGEVIG 84
          K A+IVGEV+G
Sbjct: 68 KCAKIVGEVMG 78


>gi|224458686|gb|ACN43206.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 267

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 153/267 (57%), Gaps = 9/267 (3%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I 
Sbjct: 1   SGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIE 60

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V+ 
Sbjct: 61  GITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKVLT 119

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413
           L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN       
Sbjct: 120 LKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIA 179

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +   
Sbjct: 180 RTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLE 239

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFC 500
            I  E+ E+KE F+       RRT   
Sbjct: 240 IIREELTEIKERFNDE-----RRTEIV 261


>gi|193794280|gb|ACF21352.1| DNA gyrase subunit A [Actinomyces johnsonii]
 gi|193794292|gb|ACF21358.1| DNA gyrase subunit A [Actinomyces johnsonii]
          Length = 188

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 80/188 (42%), Positives = 120/188 (63%), Gaps = 7/188 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ P++FPNLL NG+ GIAVGMAT IP HN++EI   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLE 60

Query: 209 NPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+    L+E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++    + ++    R     
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAK 178

Query: 324 LLMESIFM 331
           +++ +++ 
Sbjct: 179 VVLNNLYK 186


>gi|193794194|gb|ACF21309.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794204|gb|ACF21314.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794206|gb|ACF21315.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 80/188 (42%), Positives = 119/188 (63%), Gaps = 7/188 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP HN++E+   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 209 NPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+    L+E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+  G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-HG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++    + ++    R     
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAK 178

Query: 324 LLMESIFM 331
           +++ +++ 
Sbjct: 179 VVLNNLYK 186


>gi|194360505|gb|ACF57900.1| DNA gyrase A subunit [Actinomyces meyeri]
          Length = 188

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/188 (42%), Positives = 118/188 (62%), Gaps = 7/188 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           E+ VDF+D Y+  + EP + P++FPNLLANG+ GIAVGMAT IP HN++E+       + 
Sbjct: 1   EECVDFQDNYDGRNKEPTILPARFPNLLANGSEGIAVGMATRIPPHNLREVARGVEWALA 60

Query: 209 NPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +PE + E+LLE     I GPDFPTG  I+  R+ I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPEATREELLEALLTIIPGPDFPTGATIL-GRKGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
             C+VVTE+PYQV    L +KIA+L+   +I  + DIRDE++    + ++    R     
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQISGIADIRDETSGRTGQRLVIVLKRDAVAK 178

Query: 324 LLMESIFM 331
           +++ +++ 
Sbjct: 179 VVLNNLYK 186


>gi|112383334|gb|ABI17807.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 50/72 (69%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A
Sbjct: 1   NIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 141 ELILQGVDEDAV 152
             +L  +++  V
Sbjct: 61  GYLLADIEKKTV 72


>gi|18481446|gb|AAL73448.1|AF435419_1 DNA topoisomerase IV subunit C [Aeromonas hydrophila]
          Length = 68

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/64 (57%), Positives = 48/64 (75%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AMSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 120 NIDG 123
             D 
Sbjct: 61  APDD 64


>gi|193794294|gb|ACF21359.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/188 (42%), Positives = 120/188 (63%), Gaps = 7/188 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP HN++E+   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 209 NPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+    L+E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++    + ++    R     
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAK 178

Query: 324 LLMESIFM 331
           +++ +++ 
Sbjct: 179 VVLNNLYK 186


>gi|193794068|gb|ACF21246.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794072|gb|ACF21248.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794074|gb|ACF21249.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794076|gb|ACF21250.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794078|gb|ACF21251.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794082|gb|ACF21253.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794086|gb|ACF21255.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794088|gb|ACF21256.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794090|gb|ACF21257.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794092|gb|ACF21258.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794094|gb|ACF21259.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794096|gb|ACF21260.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794098|gb|ACF21261.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794106|gb|ACF21265.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794108|gb|ACF21266.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794110|gb|ACF21267.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794114|gb|ACF21269.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794116|gb|ACF21270.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794124|gb|ACF21274.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794128|gb|ACF21276.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794130|gb|ACF21277.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794132|gb|ACF21278.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794136|gb|ACF21280.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794138|gb|ACF21281.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794142|gb|ACF21283.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794144|gb|ACF21284.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794146|gb|ACF21285.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794148|gb|ACF21286.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794150|gb|ACF21287.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794158|gb|ACF21291.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794160|gb|ACF21292.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794170|gb|ACF21297.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794176|gb|ACF21300.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794178|gb|ACF21301.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794180|gb|ACF21302.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794188|gb|ACF21306.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794192|gb|ACF21308.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794198|gb|ACF21311.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794200|gb|ACF21312.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794202|gb|ACF21313.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794208|gb|ACF21316.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794210|gb|ACF21317.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794212|gb|ACF21318.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794216|gb|ACF21320.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794218|gb|ACF21321.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794222|gb|ACF21323.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794232|gb|ACF21328.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794238|gb|ACF21331.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794240|gb|ACF21332.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794242|gb|ACF21333.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794246|gb|ACF21335.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794250|gb|ACF21337.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794252|gb|ACF21338.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794254|gb|ACF21339.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794256|gb|ACF21340.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794258|gb|ACF21341.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794260|gb|ACF21342.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794262|gb|ACF21343.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794278|gb|ACF21351.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794282|gb|ACF21353.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794298|gb|ACF21361.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/188 (42%), Positives = 120/188 (63%), Gaps = 7/188 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP HN++E+   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 209 NPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+    L+E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++    + ++    R     
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAK 178

Query: 324 LLMESIFM 331
           +++ +++ 
Sbjct: 179 VVLNNLYK 186


>gi|215480311|gb|ACJ67500.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 268

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 83/267 (31%), Positives = 153/267 (57%), Gaps = 9/267 (3%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I ++Y  GRG   +RA+  +E+   G   I+VTE+P+QV K++LIEKIA+L+  K+I 
Sbjct: 1   SGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPFQVNKAKLIEKIADLVRDKKIE 60

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L     P+V+ 
Sbjct: 61  GITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKVLT 119

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413
           L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN       
Sbjct: 120 LKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIA 179

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +   
Sbjct: 180 RTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLE 239

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFC 500
            I  E+ E+KE F+       RRT   
Sbjct: 240 IIREELTEIKERFNDE-----RRTEIV 261


>gi|193794190|gb|ACF21307.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/188 (42%), Positives = 120/188 (63%), Gaps = 7/188 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP HN++E+   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 209 NPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+    L+E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRSGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++    + ++    R     
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAK 178

Query: 324 LLMESIFM 331
           +++ +++ 
Sbjct: 179 VVLNNLYK 186


>gi|289810787|ref|ZP_06541416.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 229

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 102/202 (50%), Gaps = 2/202 (0%)

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RR  +        KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K 
Sbjct: 3   RRCRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKA 62

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +     K
Sbjct: 63  AVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQK 122

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLL 671
           LL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + +  ++L
Sbjct: 123 LLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRML 182

Query: 672 IFSIDQIPEMSRGKGVRLQSYK 693
           +F +D +P++S+GKG ++ +  
Sbjct: 183 MFPVDSLPQLSKGKGNKIINIP 204


>gi|193794296|gb|ACF21360.1| DNA gyrase subunit A [Actinomyces viscosus]
          Length = 188

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/188 (42%), Positives = 120/188 (63%), Gaps = 7/188 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ P++FPNLL NG+ GIAVGMAT IP HN++EI   A   ++
Sbjct: 1   EDSVDFQDNYDGRNKEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLE 60

Query: 209 NPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+    L+E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLDALIEQIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++    + ++    R     
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAK 178

Query: 324 LLMESIFM 331
           +++ +++ 
Sbjct: 179 VVLNNLYK 186


>gi|8248353|gb|AAF74158.1|AF246739_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis]
          Length = 72

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 51/72 (70%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYYAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEMAGYLLQDI 72


>gi|4545077|gb|AAD22382.1| DNA gyrase A [Escherichia coli]
 gi|4545079|gb|AAD22383.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 60

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 50/60 (83%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|193794080|gb|ACF21252.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794084|gb|ACF21254.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794100|gb|ACF21262.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794102|gb|ACF21263.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794104|gb|ACF21264.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794112|gb|ACF21268.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794118|gb|ACF21271.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794120|gb|ACF21272.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794122|gb|ACF21273.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794126|gb|ACF21275.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794134|gb|ACF21279.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794140|gb|ACF21282.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794152|gb|ACF21288.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794154|gb|ACF21289.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794162|gb|ACF21293.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794164|gb|ACF21294.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794166|gb|ACF21295.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794168|gb|ACF21296.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794172|gb|ACF21298.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794174|gb|ACF21299.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794184|gb|ACF21304.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794186|gb|ACF21305.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794196|gb|ACF21310.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794214|gb|ACF21319.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794220|gb|ACF21322.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794224|gb|ACF21324.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794226|gb|ACF21325.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794230|gb|ACF21327.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794234|gb|ACF21329.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794244|gb|ACF21334.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794264|gb|ACF21344.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794266|gb|ACF21345.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794270|gb|ACF21347.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794272|gb|ACF21348.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794274|gb|ACF21349.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794286|gb|ACF21355.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794288|gb|ACF21356.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794290|gb|ACF21357.1| DNA gyrase subunit A [Actinomyces naeslundii]
          Length = 188

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/188 (42%), Positives = 121/188 (64%), Gaps = 7/188 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+ ++ EPV+ P++FPNLL NG+ GIAVGMAT IP HN++EI   A   ++
Sbjct: 1   EDSVDFQDNYDGKNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLE 60

Query: 209 NPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+    L+E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++    + ++    R     
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAK 178

Query: 324 LLMESIFM 331
           +++ +++ 
Sbjct: 179 VVLNNLYK 186


>gi|112383340|gb|ABI17810.1| topoisomerase IV [Streptococcus suis]
 gi|112383342|gb|ABI17811.1| topoisomerase IV [Streptococcus suis]
 gi|112383344|gb|ABI17812.1| topoisomerase IV [Streptococcus suis]
 gi|112383346|gb|ABI17813.1| topoisomerase IV [Streptococcus suis]
 gi|112383348|gb|ABI17814.1| topoisomerase IV [Streptococcus suis]
 gi|112383350|gb|ABI17815.1| topoisomerase IV [Streptococcus suis]
 gi|112383352|gb|ABI17816.1| topoisomerase IV [Streptococcus suis]
 gi|112383356|gb|ABI17818.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 50/72 (69%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A
Sbjct: 1   NIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 141 ELILQGVDEDAV 152
             +L  +++  V
Sbjct: 61  GYLLADIEKKTV 72


>gi|112383336|gb|ABI17808.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 49/72 (68%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A
Sbjct: 1   NIMGNFHPHGDSSIYHAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 141 ELILQGVDEDAV 152
             +L  +++  V
Sbjct: 61  GYLLADIEKKTV 72


>gi|4545081|gb|AAD22384.1| DNA gyrase A [Klebsiella oxytoca]
          Length = 60

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 50/60 (83%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|284027749|gb|ADB66700.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 90

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/89 (49%), Positives = 63/89 (70%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           ++ AM+ +G D+  A+KKSA +VG VIGK HPH D + Y + VR+AQP   RY L+ GQG
Sbjct: 2   VLCAMNVLGKDWNEAYKKSALVVGNVIGKFHPHADFAGYYTNVRMAQPSSLRYMLVEGQG 61

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            +G IDGDSAAA R++E R+ ++A  ++ 
Sbjct: 62  TYGTIDGDSAAAMRFSEIRLARIAHGLMA 90


>gi|194360503|gb|ACF57899.1| DNA gyrase A subunit [Actinomyces gerencseriae]
          Length = 188

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 77/188 (40%), Positives = 119/188 (63%), Gaps = 7/188 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           E++VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP HN++E+       ++
Sbjct: 1   EESVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVASGVQWFLE 60

Query: 209 NPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+    L+E + GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLESLIERVPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++    + ++    R     
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVGGIADIRDETSGRTGQRLVIVLKRDAVAK 178

Query: 324 LLMESIFM 331
           +++ +++ 
Sbjct: 179 VVLNNLYK 186


>gi|1498009|gb|AAB06321.1| DNA gyrase subunit A [Campylobacter sp.]
          Length = 59

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 49/59 (83%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDGD A
Sbjct: 1   SRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQDFSMRYPSVDGQGNFGSIDGDGA 59


>gi|258611538|ref|ZP_05711544.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL N3-165]
 gi|258601051|gb|EEW14376.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL N3-165]
          Length = 334

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 97/267 (36%), Gaps = 14/267 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSLKIALH 556
            +   A+     + ++  E + V ++  G+++     S    + + L  KE D       
Sbjct: 1   MQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKEADHAIFIQK 60

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTAFV---YDS 610
            ++ D +LL ++ G     P   L   R          L  DL+  ++I +A     +  
Sbjct: 61  MNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTE 120

Query: 611 TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENR 668
             + L V+  G       +        K    +K+  ++++  V  + G + + +  +N 
Sbjct: 121 EKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNG 180

Query: 669 KLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDL 726
             L +SI +IPE   R  GV+  + K    +   I   + E    + +  R   +     
Sbjct: 181 YGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMLNEQKHILLATQRGSLKQMKAS 240

Query: 727 LGWLGKRGGVGSLVPKGFPRS-GKFLS 752
                 R   G L+ +    +  +F+ 
Sbjct: 241 EFEPISRAKRGLLMLRELKSNPHRFIG 267


>gi|194360501|gb|ACF57898.1| DNA gyrase A subunit [Actinomyces odontolyticus]
          Length = 188

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 78/188 (41%), Positives = 119/188 (63%), Gaps = 7/188 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           E+ VDF+D Y+  + EP + P++FPNLLANG+ GIAVGMAT IP HN++E+       +D
Sbjct: 1   EECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPHNLRELARGVEWALD 60

Query: 209 NPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +PE + E+    L++ I GPDFPTG  I+  R+ I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPEATREELLEALIKLIPGPDFPTGATIL-GRKGIEDAYRTGRGSITQRAVVSVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
             C+VVTE+PYQV    L +KIA+L+   +I  + DIRDE++    + ++    R     
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQIGGIADIRDETSGRTGQRLVIVLKRDAVAK 178

Query: 324 LLMESIFM 331
           +++ +++ 
Sbjct: 179 VVLNNLYK 186


>gi|226327143|ref|ZP_03802661.1| hypothetical protein PROPEN_01008 [Proteus penneri ATCC 35198]
 gi|225204361|gb|EEG86715.1| hypothetical protein PROPEN_01008 [Proteus penneri ATCC 35198]
          Length = 459

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 114/242 (47%), Gaps = 9/242 (3%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
             +  E +TV++S +G IR  K HS+D  ++ FK GD    A+   +   + L+ T G++
Sbjct: 208 KHLHPEAVTVIMSEKGLIRCQKGHSIDAKSVGFKSGDDYFDAVEGMSNQPVHLIDTTGQS 267

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
           YT+    L SGR  G+A+   + +     +    + ++T K+++ S  G  FI +  ++ 
Sbjct: 268 YTVDVDALPSGRSKGDALTERLKVQKGAQLRHVVMGENTDKIVMASDAGYGFICQVDDLT 327

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL 689
           +  + GK+ L +          ++     D + ++ +  ++LIF   ++P M +GKG ++
Sbjct: 328 SKNKAGKSLLTLPENALPLPPQRLNNELTDLIMIITKGGRMLIFEASELPTMVKGKGNQM 387

Query: 690 QSYKD-----GGISDVICFKICEGLTW-IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            S        G  +      + E  +  +    R    S N+L+ +  KRG  G+ +P+G
Sbjct: 388 VSIPASQAASGEDNVAWLRVLPENASVTLHFGKRKMTMSMNELVSFKAKRGRRGTSLPRG 447

Query: 744 FP 745
             
Sbjct: 448 AQ 449



 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 83/199 (41%), Gaps = 9/199 (4%)

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + ++ GDS   A+   +   +L L + G++YTL   ++ SGR  GE +   +       +
Sbjct: 1   MSYRAGDSYHSAVRGMSNQPVLFLDSTGRSYTLSPNDMPSGRSQGEPLTGKLTFPPEASV 60

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--- 659
                  +  + L+ + +G   ++   E+    + GK  L VS + ++   + V      
Sbjct: 61  KYMLAGSAGQEYLLATKEGYGTVLSYDEMETKNKTGKGLLTVSEKTELLAPLLVDPQKKN 120

Query: 660 ---HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY--KDGGISDVICFKICEGLTWID 713
                 ++ +  ++L  S +Q+ EM  +G+G RL +   + G + + + F   +      
Sbjct: 121 EQHWFIIITDKTRILAISAEQLNEMNKKGRGTRLVALGKEQGDVIEQMLFAPKDEALIFT 180

Query: 714 SAGRSYNRSENDLLGWLGK 732
             G+       ++  + G 
Sbjct: 181 VDGQQEVLKAEEINYFSGN 199


>gi|71842512|gb|AAZ43363.1| ParC [Escherichia coli]
          Length = 65

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 1/65 (1%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DS 125
           +  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S
Sbjct: 1   NASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS 60

Query: 126 AAAYR 130
            AA R
Sbjct: 61  FAAMR 65


>gi|289064494|gb|ADC80569.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|47094489|ref|ZP_00232164.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 4b
           H7858]
 gi|47017134|gb|EAL07992.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 4b
           H7858]
          Length = 334

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 93/258 (36%), Gaps = 14/258 (5%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSLKIALHAHTTDRILL 565
              + ++  E + V ++  G+++     S    + + L  KE D        ++ D +LL
Sbjct: 10  IDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKEADHAIFIQKMNSLDSLLL 69

Query: 566 LSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
            ++ G     P   L   R          L  DL+  ++I +A     +    + L V+ 
Sbjct: 70  FTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKRFLFVTK 129

Query: 620 KGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
            G       +        K    +K+  ++++  V  + G + + +  +N   L +SI +
Sbjct: 130 NGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYGLRYSITE 189

Query: 678 IPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           IPE   R  GV+  + K    +   I     E    + +  R   +           R  
Sbjct: 190 IPESGARTAGVKAINLKQDDIVIGGIVLMPNEQKHILLATQRGSLKQMKASEFEPISRAK 249

Query: 736 VGSLVPKGFPRS-GKFLS 752
            G L+ +    +  +F+ 
Sbjct: 250 RGLLMLRELKSNPHRFIG 267



 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 43/156 (27%), Gaps = 24/156 (15%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
            I T  +  +   ++ V+ +G      +    A+       L +   +    + K+   D
Sbjct: 9   KIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN---GAELAMKEADHAIFIQKMNSLD 65

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD------------GGISDVICFKI-C 706
            + +       +   + ++P+      +R ++  D              I   I  +   
Sbjct: 66  SLLLFTSKGNFIYRPVHELPD------IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFT 119

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           E   ++        +           R     +  K
Sbjct: 120 EEKRFLFVTKNGMTKQSAITNYKPQ-RYSKSMMAIK 154


>gi|313638139|gb|EFS03398.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL S4-171]
          Length = 296

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 13/221 (5%)

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQLLIDLNHNQ 600
             KE D        ++ + +LL ++ G     P   L   R          L  DL+  +
Sbjct: 10  AMKEADHAIFIKKMNSLESLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGE 69

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKV 656
           +I +      +    + L V+  G       +        K    +K+  ++++  V  +
Sbjct: 70  EIRSVIDIPTFTEEHRFLFVTKNGMTKQSLITNYKPQRYSKSMMAIKLKDDDELLNVHLI 129

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWID 713
            G + + +  +N   L + I +IPE   R  GV+  + K D  +   I   + +    + 
Sbjct: 130 DGTEDIFLATKNGYGLRYPITEIPESGARTAGVKAINLKQDDKVVGGIVLSLNDPKHILL 189

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
           +  R   +           R   G L+ +   ++   +F+ 
Sbjct: 190 ATQRGSLKQMKASEFEPISRAKRGLLMLREL-KNNPHRFIG 229


>gi|289064512|gb|ADC80578.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 43/64 (67%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|46203155|ref|ZP_00051974.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 363

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 154/363 (42%), Positives = 211/363 (58%), Gaps = 3/363 (0%)

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           + K+RLIEK+A+L+  K++PLL D+RDESAEDVR+VL P++RS+DP +LMES+F LS++E
Sbjct: 1   MPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLEPRSRSVDPVMLMESLFRLSELE 60

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
            R PLN+NVL  G VP+V+ L   L+EW+ HRR VL RRS++R+  I+RR+EIL GLLI 
Sbjct: 61  ARVPLNLNVLVGGVVPRVIGLAEALREWVDHRRVVLQRRSTYRLGQIERRLEILGGLLIV 120

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           YL++DE+I IIR ED+PK  +++RF LT+ Q +AIL+ RLRSLRKLEE ++K E D L  
Sbjct: 121 YLDLDEVIRIIREEDEPKAALMARFELTDVQANAILDTRLRSLRKLEEMELKREFDELTK 180

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           EK+ I+ LL S K QW  I  +IR VK+ F   T LG+RRTT                  
Sbjct: 181 EKQGIEELLGSEKLQWADITKQIRAVKKTFGPETKLGKRRTTLENPPDTAGIDFTARHGR 240

Query: 517 KEPITVVISNRGWIRSLKS--HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
                      G     +   H      L  +      +       D    L   G  + 
Sbjct: 241 ARADHGDPVREGLDPRAEGARHRPVGRLLQGRRHAEGVVPQRDDGQDPAARLERQG-LHP 299

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
                  +G G G+ ++L++DL+   +IV A  Y    KLL   S G  FI     + AN
Sbjct: 300 RGVEAARAGPGFGDPVRLMVDLDDGTEIVAALPYKPESKLLFAGSDGRGFIAPSDALFAN 359

Query: 635 TRK 637
           TR+
Sbjct: 360 TRR 362


>gi|321473409|gb|EFX84376.1| hypothetical protein DAPPUDRAFT_670 [Daphnia pulex]
          Length = 667

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/399 (16%), Positives = 137/399 (34%), Gaps = 34/399 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAY-AL-STIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S  L  +++K VS    +++  + +  +      R++P + DGF    R+ ++   +   
Sbjct: 257 SGDLYAKDIKEVSYHDFVKKDLIRFRNMEYV---RSVPSIMDGFNERQRKTLYTCIKRDY 313

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                  + A  V E      P  D  +  ++  LAQ F       L+   G F +   +
Sbjct: 314 KEEINVAQLAVSVAENCAYYQP--DLLI-GTITGLAQDFVGSNNINLLIPNGQFASRHLE 370

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE-PVVFPSKFPNLLANGTS 181
                +  Y    M+++   I    D+  + +R   +   S  P  F    P +L NG +
Sbjct: 371 SKDVGSPDYIFTMMSKITRKIFHPRDDPLLKYRT--DGNQSIEPEYFAPIIPMVLVNGAN 428

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GI  G  T IP  N +EI E    +++  + +            +  G      R   + 
Sbjct: 429 GIGTGFKTKIPKQNPREIIENLKRMLNGEKPNPMDP--------WFKGYRGTVERIDQLN 480

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
               G           + E+          ++P +  K  ++EK+      +  P++ D 
Sbjct: 481 FVISGELAVLSPTTIEITELPV--------DVPTENYKKSVLEKL-LCGSEECPPIITDY 531

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ++   ++    +      +   +  E       +++ + L   +L        +     +
Sbjct: 532 QEHHTDNNVRFVVTMTEKMMQQVESEGFHRAFKLQSVYSLRSMLLYDSNG--SLKTYNSV 589

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            + +    EV       R      +VE L+  L+   N 
Sbjct: 590 DDIMNEFYEVRLELYRKRRDYFSGKVEALRARLVNQNNF 628


>gi|3510609|gb|AAC33554.1| topoisomerase IV subunit A [Chlamydia trachomatis]
          Length = 97

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/101 (38%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN 
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKRFLIETQGNFGNP 95


>gi|18175495|gb|AAL60062.1| DNA gyrase subunit A [Yersinia enterocolitica]
 gi|297374128|emb|CBL88422.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374130|emb|CBL88423.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374132|emb|CBL88424.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374134|emb|CBL88425.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374136|emb|CBL88426.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374138|emb|CBL88427.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374140|emb|CBL88428.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374142|emb|CBL88429.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374144|emb|CBL88430.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374146|emb|CBL88431.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374148|emb|CBL88432.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374150|emb|CBL88433.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374152|emb|CBL88434.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374154|emb|CBL88435.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374156|emb|CBL88436.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374158|emb|CBL88437.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374160|emb|CBL88438.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374162|emb|CBL88439.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374164|emb|CBL88440.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374172|emb|CBL88444.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374174|emb|CBL88445.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374176|emb|CBL88446.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374178|emb|CBL88447.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374180|emb|CBL88448.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374182|emb|CBL88449.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374184|emb|CBL88450.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374186|emb|CBL88451.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374188|emb|CBL88452.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374190|emb|CBL88453.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374192|emb|CBL88454.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374194|emb|CBL88455.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374196|emb|CBL88456.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374198|emb|CBL88457.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374200|emb|CBL88458.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374202|emb|CBL88459.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374204|emb|CBL88460.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374206|emb|CBL88461.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374208|emb|CBL88462.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374210|emb|CBL88463.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374212|emb|CBL88464.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374214|emb|CBL88465.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374216|emb|CBL88466.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374218|emb|CBL88467.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374220|emb|CBL88468.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374222|emb|CBL88469.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374224|emb|CBL88470.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374226|emb|CBL88471.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374228|emb|CBL88472.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374230|emb|CBL88473.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374232|emb|CBL88474.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374234|emb|CBL88475.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374236|emb|CBL88476.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374238|emb|CBL88477.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374240|emb|CBL88478.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374242|emb|CBL88479.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374244|emb|CBL88480.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374246|emb|CBL88481.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374248|emb|CBL88482.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374250|emb|CBL88483.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374252|emb|CBL88484.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374254|emb|CBL88485.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374256|emb|CBL88486.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374258|emb|CBL88487.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374260|emb|CBL88488.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374262|emb|CBL88489.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374264|emb|CBL88490.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374266|emb|CBL88491.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374268|emb|CBL88492.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374270|emb|CBL88493.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374272|emb|CBL88494.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374274|emb|CBL88495.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374276|emb|CBL88496.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374278|emb|CBL88497.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374280|emb|CBL88498.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/56 (64%), Positives = 46/56 (82%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|227554720|ref|ZP_03984767.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
 gi|227176148|gb|EEI57120.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
          Length = 318

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 87/294 (29%), Positives = 164/294 (55%), Gaps = 5/294 (1%)

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  + LID+P  S+EKL+EYI GPDFPTGGI+   +  I ++Y  GRG   +RA+  +E
Sbjct: 1   IDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQ-GKAEIKKAYETGRGKVILRAKTKIE 59

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++    + 
Sbjct: 60  PLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVVELKKD 119

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  R  F 
Sbjct: 120 VNAEGILNYLFKNTELQINYNFNMVAIDNM-TPQQVGLKRILESYITHRKSVIINRCQFE 178

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRL 436
           +    +R  I+ GL+ A   +D++IA IR     K    +    ++ TE Q +AI+ L+L
Sbjct: 179 LDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAIVTLQL 238

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
             L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +    
Sbjct: 239 YRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNPR 292


>gi|213864968|ref|ZP_03387087.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 295

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 95/228 (41%), Positives = 136/228 (59%), Gaps = 3/228 (1%)

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR GRG
Sbjct: 1   TNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRG 59

Query: 249 GFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +
Sbjct: 60  KVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDK 119

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ H
Sbjct: 120 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRH 178

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
           RREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P  
Sbjct: 179 RREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAE 226


>gi|289064496|gb|ADC80570.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 43/64 (67%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y++LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYNTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|289064492|gb|ADC80568.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|71842514|gb|AAZ43364.1| ParC [Escherichia coli]
          Length = 65

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 1/65 (1%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DS 125
           +  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S
Sbjct: 1   NASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGVPDDPKS 60

Query: 126 AAAYR 130
            AA R
Sbjct: 61  FAAMR 65


>gi|321473423|gb|EFX84390.1| hypothetical protein DAPPUDRAFT_30330 [Daphnia pulex]
          Length = 547

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/399 (16%), Positives = 137/399 (34%), Gaps = 34/399 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAY-AL-STIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S  L  +++K VS    +++  + +  +      R++P + DGF    R+ ++   +   
Sbjct: 74  SGDLYAKDIKEVSYHDFVKKDLIRFRNMEYV---RSVPSIMDGFNERQRKTLYTCIKRDY 130

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                  + A  V E      P  D  +  ++  LAQ F       L+   G F +   +
Sbjct: 131 KEEINVAQLAVSVAENCAYYQP--DLLI-GTITGLAQDFVGSNNINLLIPNGQFASRHLE 187

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE-PVVFPSKFPNLLANGTS 181
                +  Y    M+++   I    D+  + +R   +   S  P  F    P +L NG +
Sbjct: 188 SKDVGSPDYIFTMMSKITRKIFHPRDDPLLKYRT--DGNQSIEPEYFAPIIPMVLVNGAN 245

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GI  G  T IP  N +EI E    +++  + +            +  G      R   + 
Sbjct: 246 GIGTGFKTKIPKQNPREIIENLKRMLNGEKPNPMDP--------WFKGYRGTVERIDQLN 297

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
               G           + E+          ++P +  K  ++EK+      +  P++ D 
Sbjct: 298 FVISGELAVLSPTTIEITELPV--------DVPTENYKKSVLEKL-LCGSEECPPIITDY 348

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ++   ++    +      +   +  E       +++ + L   +L        +     +
Sbjct: 349 QEHHTDNNVRFVVTMTEKMMQQVESEGFHRAFKLQSVYSLRSMLLYDSNG--SLKTYNSV 406

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            + +    EV       R      +VE L+  L+   N 
Sbjct: 407 DDIMNEFYEVRLELYRKRRDYFSGKVEALRARLVNQNNF 445


>gi|289064510|gb|ADC80577.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYGTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|282599189|ref|YP_003358501.1| gp52 topoisomerase II medium subunit [Shigella phage phiSboM-AG3]
 gi|226973495|gb|ACO94248.1| gp52 topoisomerase II medium subunit [Shigella phage phiSboM-AG3]
          Length = 446

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 87/477 (18%), Positives = 160/477 (33%), Gaps = 61/477 (12%)

Query: 18  KAVSLRFALEERYLAYALSTIKE-RAIPDLRDGFKPVHRRIIHAMSE---------MGLD 67
           K++++   +   +  +  S +   R IP L D  KP  R+I+ A  E         +G+ 
Sbjct: 7   KSITVTDFVNTDHKQF--SVVNSIRQIPQLIDSLKPSQRKILFAALEYNKEEIVDRLGMF 64

Query: 68  FGAAFK-KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNIDGD 124
             A    KS    GE +             ++V +AQ F      P     G FG+I G 
Sbjct: 65  AAARTNYKSG---GENMS-----------GTIVNMAQGFPGTNNIPYFDRDGQFGSIMGR 110

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGI 183
            A++ RY    ++ V   I +  DE  +++   Y  E+  EP  F    P  L NG +GI
Sbjct: 111 DASSARYISVAVSDVIRKIFRKEDEGILEY--NYLGEERLEPKFFLPILPMFLVNGINGI 168

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G +T  P H V+ +  A  AL              + G D           +      
Sbjct: 169 GTGYSTDTPCHCVKSVLSALRAL--------------LRGEDPKDLKPYWNGYKGETGYT 214

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             G      RA          +  + +TE+P     ++  E    L + K   L E   D
Sbjct: 215 EEG------RAYSRGIFRRVNATTLHITEVPVG-WFAKTYETKVLLPLYKAGILTEYAND 267

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            + +   I +  K   L      +   M        P+       G + +      +L  
Sbjct: 268 TTEDGWDITVVFKRGELSKLSDEQVEQMFKLYSANKPVWTAWDEDGVIHRYAGWQDMLLP 327

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI----IAIIRNEDKPKPVMVS 419
           +  +R      R  + ++ +  R+  L    +       +       +      +     
Sbjct: 328 FFNYRLSRYEDRRQYLLKDMADRIRKLGDRAVFIEWATRVDLRQKIDVLKSLFMQDYPDF 387

Query: 420 RFSLTENQVDAILNLRL----RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
              L E     + ++ L    R L+++E  + + +  +   + +     L+  ++  
Sbjct: 388 GGDLDELFKMPLSSITLDARERLLKQIENLEAQHKELSKKEDIDLYTEDLDDLEKAL 444


>gi|289064506|gb|ADC80575.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 43/64 (67%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAEAMGNYHPHGDGSIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|28193551|emb|CAD56008.1| topoisomerase IV [Providencia stuartii]
          Length = 58

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 58


>gi|289064504|gb|ADC80574.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 44/64 (68%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD+S+YD+LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAEAMGNYHPHGDESIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|289064498|gb|ADC80571.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYHTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|48425718|pdb|1SUU|A Chain A, Structure Of Dna Gyrase A C-Terminal Domain
          Length = 312

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 106/259 (40%), Gaps = 17/259 (6%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDR 562
              +++KE I V+++ +G+++ L  +           LS+    +GD + IAL  +T D 
Sbjct: 1   MSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDY 60

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAF---VYDSTCKLLVV 617
           + ++S +GK Y + A  +       +   +   I+L   ++I+T            LL+ 
Sbjct: 61  LFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLT 120

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID 676
           ++ G     E ++  A   +G   +K++ ++ +     V  D  V  + +     IF+  
Sbjct: 121 TASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSR 180

Query: 677 QIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            +   +RG +GV     K+G +  V    + E    +  +   Y +  N       KRG 
Sbjct: 181 DVRLTNRGTQGVCGMKLKEGDL-FVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGA 239

Query: 736 VGSLVPKGFPRS-GKFLSS 753
            G    K   +  G  + +
Sbjct: 240 TGYTSYKKSDKKAGSVVDA 258



 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 7/173 (4%)

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           S  +  +   + D +  A      ++++ LS  G A+   + ++       + +  +  L
Sbjct: 139 SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM-KL 197

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MK 651
                 V          LL+VS  G    +  S+I    R    +      +K     + 
Sbjct: 198 KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVD 257

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +     D + +V +  K L     ++ E  +  +G+++    +  +  V  F
Sbjct: 258 AIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSVSKF 310


>gi|289064500|gb|ADC80572.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPH D S+YD+LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHADASIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|297850918|ref|XP_002893340.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339182|gb|EFH69599.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 951

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 12/175 (6%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFG-AAFKKSARIVGEVI--GKLHPHGDQSVYDS 97
           R+IP++ DG KP  R+ +       L        K + +    I     + HG+QS+  +
Sbjct: 638 RSIPEMIDGLKPGQRKTLFC----SLARDWKTECKVSVLTAHAIDRSDYN-HGEQSLAST 692

Query: 98  LVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           ++++AQ +       L+   G FG+    G  AA+ RY    ++     +    D+  + 
Sbjct: 693 IIKMAQDYVGSSNVNLLLPMGQFGSQIFGGQDAASARYLYTMISPATRALFHKDDDVLLA 752

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           + D  N+   EP  +    P +L NG  GI  G +T +P ++ +++ +  + L+ 
Sbjct: 753 WMDGDNQRMIEPKWYIPIIPTVLVNGCEGIGTGWSTFVPKYSTKDVIKNIMRLMS 807


>gi|224458674|gb|ACN43200.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 269

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 150/261 (57%), Gaps = 9/261 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+R
Sbjct: 2   YESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLR 61

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      ++    R  + ++++ +++  + ++T F +N+  L     P+V+ L   L+
Sbjct: 62  DESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKVLTLKQCLE 120

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN       +  ++ 
Sbjct: 121 HYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIE 180

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+
Sbjct: 181 QFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREEL 240

Query: 480 REVKEIFSKSTDLGRRRTTFC 500
            E+KE F+       RRT   
Sbjct: 241 TEIKERFNDE-----RRTEIV 256


>gi|297374166|emb|CBL88441.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 46/56 (82%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|312270883|gb|ADQ55849.1| topoisomerase II medium subunit [Escherichia phage PhaxI]
          Length = 446

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 89/465 (19%), Positives = 167/465 (35%), Gaps = 54/465 (11%)

Query: 18  KAVSLRFALEERYLAYALSTIKE-RAIPDLRDGFKPVHRRIIHAMSE---------MGLD 67
           K++++   +   +  +  S +   R IP L D  KP  R+I+ A  E         +G+ 
Sbjct: 7   KSITVTEFINGDHKEF--SVVNSIRQIPQLIDSLKPSQRKILFAALEYNKEEIVDRLGMF 64

Query: 68  FGAAFK-KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNIDGD 124
             A    KS    GE +             ++V +AQ F      P     G FG+I G 
Sbjct: 65  AAARTNYKSG---GENMS-----------GTIVNMAQGFPGTNNIPYFDRDGQFGSIMGR 110

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGI 183
            A + RY    +++V   I +  D+  +++   Y  E+  EP  F    P  L NG +GI
Sbjct: 111 EAPSARYISVAVSEVIRKIFRKEDDGILEY--NYLGEEKLEPKFFLPILPMFLVNGINGI 168

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G AT  P H V+ +  A  AL+   +    K                    +      
Sbjct: 169 GSGYATDPPCHCVKSVLSALRALLRGKDPKDLKP--------------YWNGFKGETGYT 214

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             G      RA          +  + +TE+P     S+  E    L + K   L E   D
Sbjct: 215 EEG------RAYCRGLFPRVNATTLNITEVPIG-WFSKTYETKVLLPLYKAGVLTEYAND 267

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            + +   I +  K   L      +   M        P+       G + +      +L  
Sbjct: 268 TTEDGWDITVVFKRGELSKLNDEQVEQMFRLYSANKPVWTAWDEDGVIHRYDGWKDMLLP 327

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           +  +R      R  + ++ +  ++  L    I       I  + R+  + K +  + +  
Sbjct: 328 FFNYRLSRYEDRRQYLIKELTDKIHRLNNRAIFI-GWAVITDMRRSLTELKALFQTDYPD 386

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
            +  +D +  + L S+      ++ +++ NL  ++E++++  +  
Sbjct: 387 FDGDLDDLFKMSLSSITLDARERLLNQIKNLEVQREELNNKQDID 431


>gi|530409|emb|CAA83715.1| DNA gyrase (A) [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 200

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPE 680
                + SE     R GK  + +   +++  V   TG   + +  E+ K++      +  
Sbjct: 1   MIKRTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTIFIANESGKVIRIKESVVNP 60

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            SR G GVR    +   +  V      +       + +   +        +  R G G  
Sbjct: 61  QSRVGSGVRALKLETNDVV-VGAISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIK 119

Query: 740 VPKGFPRSGKF 750
           V     R+GKF
Sbjct: 120 VMNLNQRTGKF 130



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 65/187 (34%), Gaps = 6/187 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +I           +     A++ +E D L         D I + +  GK   +   ++++
Sbjct: 1   MIKRTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTIFIANESGKVIRIK-ESVVN 59

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
            +    +    + L  N  +V A        +  VS+KG        +   + R GK   
Sbjct: 60  PQSRVGSGVRALKLETNDVVVGAISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIK 119

Query: 642 -LKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            + +   + +   ++     D + ++  +  L+   +  IP +SR   GV+     D   
Sbjct: 120 VMNLNQRTGKFKAIIDARETDLILIISSDGNLIKTKVSNIPSLSRNASGVKAIRLADXQE 179

Query: 698 SDVICFK 704
            +    +
Sbjct: 180 INAXTLE 186


>gi|297803548|ref|XP_002869658.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297315494|gb|EFH45917.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1089

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 153/442 (34%), Gaps = 51/442 (11%)

Query: 18   KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF---KK 74
            + +S    + E  + +A   I ER+IP L DGF+   R++++++ +   +    F    K
Sbjct: 630  RRMSYGSFINEELI-FAAQAILERSIPSLIDGFRLAQRKVVYSLFKREQEANVNFEEKIK 688

Query: 75   SARIVGEVIG-KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI------DGDS 125
              ++   V     H H ++S+  +++R+AQ F       L+     FG+       D D 
Sbjct: 689  VTQLASYVSEHAAHHHCERSLSRTIIRMAQTFVGSNNVNLLQPFCLFGSRASGGTHDVD- 747

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
                RY    ++ +  L++   D+D +++ + +      P  F    P +L NG+  + +
Sbjct: 748  ---ARYIHTLLSSITRLLIHKDDDDILEYHNVF-GRKRHPECFLPIMPMVLVNGSQSVGM 803

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
            G    IPS++ + I      L+     +             P        +  I +    
Sbjct: 804  GWNRFIPSYDPRVISSNIKRLLRGETQT-------------PMLPWYRNFKGDIKQVSSN 850

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
                        + +V      I +TE+P  V     ++ +  L     I   ++  D +
Sbjct: 851  EYTT------TGIYDVNDKDRSIRITELPVHVWTMNYLKVLERLKKHSVIEGYKNDSDNT 904

Query: 306  AEDV-----RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP-------- 352
            + D+        +       +P  L+     +           NVL+    P        
Sbjct: 905  SIDIKLSLSEEQMKRFLNEKNPRKLLRLSTTIRTNNMHLLNRFNVLTKYESPDKILEEFF 964

Query: 353  -QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
             + + +  + KE +         +   ++    R +     + +    + +     +   
Sbjct: 965  EERLNMYRVRKEHMVQILTFERDKLECKVAIFQRVLNGEINIALNLDAVLQEKGFKKYGK 1024

Query: 412  KPKPVMVSRFSLTENQVDAILN 433
                   S   LTE+ +  I +
Sbjct: 1025 TINDRFPSYDYLTEDLMSMIRD 1046


>gi|289064508|gb|ADC80576.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAEAMGNYHPHGDGSIYGTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|289064502|gb|ADC80573.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPH D S+YD+LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHCDASIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|23008103|ref|ZP_00049686.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 496

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 88/391 (22%), Positives = 150/391 (38%), Gaps = 39/391 (9%)

Query: 290 IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
           +  KR+  + D+RDES  D   ++    R    D+++  ++  + ++T F  NM  L+ G
Sbjct: 1   MKEKRLEGISDLRDESDRDGMRIVVELKRDAIADVVLNQLYRYTPLQTSFGANMVALN-G 59

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
             P++M L  +L+ +   R EV+ RR+ F +     R  +L GL IA  NIDE+I +IR 
Sbjct: 60  GRPELMNLKDLLQAFNDFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRT 119

Query: 410 EDKPKPVMVS-----------------------------RFSLTENQVDAILNLRLRSLR 440
              P     +                              + L+E Q  AIL+LRL+ L 
Sbjct: 120 SPDPNTAREALMARDWPAHDIAPLIALVDDPRHRVADDGTYRLSETQARAILDLRLQRLT 179

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L   +I  EL  L  E      +L S  +    +  E+ EV+E+F+         + F 
Sbjct: 180 ALXRDEIGDELKKLADEIADYLDILRSRARIQAIVKSELAEVRELFATPRKTEIIDSDFS 239

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
                  A     +       V        R+ K      + +  ++ D +     A T 
Sbjct: 240 VEDEDLIAREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRAGMATRDEDFVTRLFVASTH 299

Query: 561 DRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHN-QDIVTAFVYDSTC----- 612
             +L  S  G+AY      L        G+A+  ++ L +  + I T             
Sbjct: 300 TPVLFFSDQGQAYKEKVWRLPIAAPNARGKALVNILHLQNEGERISTIMPLPEDEASWET 359

Query: 613 -KLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             ++  ++ GN    + S+     R GK  +
Sbjct: 360 LDVMFATASGNVRRNKLSDFTTVNRNGKIAM 390



 Score = 40.9 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 10/37 (27%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I      +  +   Y +          KRGG G    
Sbjct: 246 IAREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRAGM 282


>gi|71842518|gb|AAZ43366.1| ParC [Escherichia coli]
          Length = 65

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DS 125
           +  A FKKSAR VG+V+GK HPHGD + Y ++V + QPF  RYPL+ GQGN+G  D   S
Sbjct: 1   NASAKFKKSARTVGDVLGKYHPHGDIACYGAMVLMVQPFSYRYPLVDGQGNWGAPDDPKS 60

Query: 126 AAAYR 130
            AA R
Sbjct: 61  FAAMR 65


>gi|297374168|emb|CBL88442.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/56 (64%), Positives = 47/56 (83%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +G D+   +KKSAR+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|50079973|gb|AAT69559.1| DNA gyrase [Acinetobacter baumannii]
          Length = 52

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/52 (67%), Positives = 42/52 (80%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           GK HPH D +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 1   GKYHPHCDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVR 52


>gi|312184024|gb|ADQ42775.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 72

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 104 PFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
            F  RY L+ GQGNFG+IDGDSAAA RYTE RMT++A  +L  +++D VD+ D Y+  + 
Sbjct: 12  DFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDWEDNYDGSER 71

Query: 164 E 164
            
Sbjct: 72  M 72


>gi|50079975|gb|AAT69560.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 58

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           +V+GK HPH D + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA+++
Sbjct: 1   DVLGKYHPHCDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLS 58


>gi|4545085|gb|AAD22386.1| DNA gyrase A [Enterobacter cloacae]
          Length = 55

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 46/55 (83%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 55


>gi|294626547|ref|ZP_06705145.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599114|gb|EFF43253.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 260

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 7/253 (2%)

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
           A +A  +  M+  EP+TVV+S +GW+R+ K H VD + + +++GD L  A+ + +T ++ 
Sbjct: 5   AAQAIDETEMVASEPMTVVLSQKGWVRAAKGHEVDPAGMSYRDGDGLLTAVRSRSTHQVA 64

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            L +DG+AY+     L S RG+GE +                  D+  + ++ SS G  F
Sbjct: 65  FLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVLASSHGYGF 124

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEM 681
           +     +    + GK  L +++   +    +V+    D +  V     LL      +PE+
Sbjct: 125 VTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPATDVPEL 184

Query: 682 SRGKGVRLQSYKDGGI----SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
            +GKG ++       +       +          + S  R+ + S  DL  ++G R   G
Sbjct: 185 DKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTYVGARASRG 244

Query: 738 SLVPKGFPRSGKF 750
           SL+P+G+ +    
Sbjct: 245 SLLPRGWQKVDGL 257


>gi|297374170|emb|CBL88443.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 45/56 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +G D+   +KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|215480313|gb|ACJ67501.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 260

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 82/258 (31%), Positives = 149/258 (57%), Gaps = 9/258 (3%)

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 2   GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 61

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 62  DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKVLTLKQCLEHYL 120

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN       +  ++ +FS
Sbjct: 121 DHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFS 180

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+ E+
Sbjct: 181 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEI 240

Query: 483 KEIFSKSTDLGRRRTTFC 500
           KE F+       RRT   
Sbjct: 241 KERFNDE-----RRTEIV 253


>gi|2564211|emb|CAB17081.1| gyrase A [Acholeplasma laidlawii PG-8A]
          Length = 53

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/53 (66%), Positives = 45/53 (84%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           ARIVG+V+GK HPHGD S+Y+++VR+AQPF  R PL+ G GNFG++DGD AAA
Sbjct: 1   ARIVGDVMGKYHPHGDSSIYNAMVRMAQPFSYRKPLVDGHGNFGSVDGDGAAA 53


>gi|270676214|ref|ZP_06222680.1| Topoisomerase IV subunit A [Haemophilus influenzae HK1212]
 gi|270316446|gb|EFA28324.1| Topoisomerase IV subunit A [Haemophilus influenzae HK1212]
          Length = 76

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 52/75 (69%)

Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2  TNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70 AAFKKSARIVGEVIG 84
          A +KKSAR VG+V+G
Sbjct: 62 AKYKKSARTVGDVLG 76


>gi|3767588|dbj|BAA33853.1| ParC subunit of DNA topoisomerase IV [Enterococcus faecalis]
          Length = 69

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 46/69 (66%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + +M++ G  F   F+KSA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN
Sbjct: 1   LFSMNKDGNTFDKGFRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGN 60

Query: 118 FGNIDGDSA 126
            G++DGD  
Sbjct: 61  NGSMDGDPP 69


>gi|224458688|gb|ACN43207.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 255

 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 146/255 (57%), Gaps = 9/255 (3%)

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +
Sbjct: 1   SITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRN 60

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  +  +++ +++  + ++T F +NM  L     P+V+ L   L  +L H+
Sbjct: 61  GMRIVIEIRRDANAHVILNNLYKQTALQTSFGINMLALVD-GEPKVLNLKQCLVHYLDHQ 119

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN       +  ++ +FSLTE
Sbjct: 120 KVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFSLTE 179

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L + ++    I  E+ E+KE 
Sbjct: 180 KQAQAILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVLEIIREELTEIKER 239

Query: 486 FSKSTDLGRRRTTFC 500
           F+       RRT   
Sbjct: 240 FNDE-----RRTEIV 249


>gi|157885972|emb|CAP09241.1| topoisomerase (DNA) II alpha [Danio rerio]
          Length = 810

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 125/350 (35%), Gaps = 34/350 (9%)

Query: 93  SVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVD 148
           S+  ++V LAQ F       L+   G FG     G  +A+ RY    ++ +A L+   VD
Sbjct: 2   SLMMTIVGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSTLARLLFPVVD 61

Query: 149 EDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++ + +   Y++    EP  +    P +LANG  GI  G A+ IP+++V+EI      ++
Sbjct: 62  DNLLKY--NYDDNLRVEPEWYMPIIPLVLANGGEGIGTGWASRIPNYDVREIINNIHRML 119

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           +  E            P  P+      + + +       +  +       + +       
Sbjct: 120 NGEEPL----------PMLPSYKGFKGTIDEL------AKNQYVNNGEVAIIDS----TT 159

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIP---LLEDIRDESAEDVRIVLFPKNRSLDPDL 324
           I +TE+P +       E + E+++        L+ D ++   +     +         + 
Sbjct: 160 IEITELPVKTWTQTYKENVLEVMLNGTEKVPALITDYKEYHTDTTVRFVVKMTEERLREA 219

Query: 325 LMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
               +  +  ++     N  VL      + +   +  ILKE+   R +    R  + +  
Sbjct: 220 EAAGLHKVFKLQNLLTCNSMVLFDHVGSLKKYESVQDILKEFFELRMKYYVLRKDWLVGM 279

Query: 383 --IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
              +      +   I       ++   + + +   ++      ++     
Sbjct: 280 LGAESAKLSNQARFILEKIQGTLVIENKPKKELIRMLQQMGYDSDPVKAW 329


>gi|7682321|gb|AAF67217.1|AF144766_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682325|gb|AAF67219.1|AF144768_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682328|gb|AAF67220.1|AF144769_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682330|gb|AAF67221.1|AF144770_1 topoisomerase IV subunit A [Streptococcus sanguinis]
 gi|7682332|gb|AAF67222.1|AF144771_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682323|gb|AAF67218.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 44/61 (72%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
             HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +L
Sbjct: 1   NFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLL 60

Query: 145 Q 145
           Q
Sbjct: 61  Q 61


>gi|1542969|gb|AAB08038.1| topoisomerase IV subunit; Method: conceptual translation supplied
           by author [Streptococcus pneumoniae]
          Length = 69

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 47/69 (68%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPV RRI+++M++    F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +     
Sbjct: 1   KPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNCEI 60

Query: 111 LISGQGNFG 119
           L+   GN G
Sbjct: 61  LVEMHGNNG 69


>gi|289677157|ref|ZP_06498047.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 358

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 100/332 (30%), Positives = 172/332 (51%), Gaps = 46/332 (13%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR--GSW 266
           NPE+++++L++YI GPDFPT   I+  R  I+E+YR GRG   +RAR  VE++ +  G  
Sbjct: 1   NPELTVDELMQYIPGPDFPTAA-IINGRAGIIEAYRTGRGRIYMRARSIVEDIDKVGGRQ 59

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    R   P++++
Sbjct: 60  QIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELRRGEVPEVIL 119

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
            +++  + +++ F +N+  L     P+++ L  +L+ ++ HRREV+ RR+ F ++    R
Sbjct: 120 NNLYAQTQLQSVFGINIVALID-GRPRILNLKDLLEAFVRHRREVVTRRTVFELRKARER 178

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------------------ 416
             IL+G  +A  NID +IA+I+    P                                 
Sbjct: 179 GHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERAGADSCRPEN 238

Query: 417 -------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                     ++ L+  Q  AIL LRL  L  LE  ++  E   +L +  ++  +LNS  
Sbjct: 239 LDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGELIRILNSAT 298

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           +    I  E+  ++  +  +     RRT   +
Sbjct: 299 RLMEVIREELELIRSEYGDA-----RRTEILD 325


>gi|9957073|gb|AAG09201.1|AF175687_1 topoisomerase IV [Bacteroides fragilis]
          Length = 58

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           SE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +A PF  RYPL+ GQGN+G
Sbjct: 1   SELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAHPFSYRYPLVDGQGNWG 58


>gi|323695906|gb|ADX99577.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 60

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 46/60 (76%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           G+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E +
Sbjct: 1   GQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQL 60


>gi|294338122|emb|CBJ93960.1| Possible DNA topoisomerase (medium subunit) [Campylobacter phage
           CP220]
          Length = 442

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 72/467 (15%), Positives = 159/467 (34%), Gaps = 38/467 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S++         Y+  +   R I    DG K   R+II+   +  L+          I  
Sbjct: 5   SIQDYFLNELTNYSCYSTL-RMIASSIDGLKNSSRKIINTALDKKLNTETK----VSIFD 59

Query: 81  EVIGKL--HPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            ++     + HG  S    +  +A  +      PL+ G+GNFG+   +  AA RY   + 
Sbjct: 60  NMVQSYTQYLHG--SCAGVIQNMAASYTGSNNIPLLEGKGNFGSRFINEPAAPRYVYVKN 117

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT-SGIAVGMATSIPSHN 195
            +    +   + +  V     +   + EPV +    P L+ NG+ +G+A G   +I   +
Sbjct: 118 KKYINDLF-DIKD--VLISQNFEGSEIEPVFYVPSLPILVLNGSMNGLASGFKQNILPRS 174

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           +  + +               L  YI G          +    +VE        +     
Sbjct: 175 LDSVIK------YIKTGKKVDLKPYIAG---------FKGTVELVEDASSNNTQWNFIGV 219

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             V +        ++TEIP  ++ ++ +E +  L+ +K+I   +D+ D+  ++ +  +  
Sbjct: 220 VEVNKNKA-----IITEIPPFIEYTKYLEILDNLVESKKIKNYKDLSDQRNQEFKFEVIF 274

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +       +        + E    L+ N            +D  +        +     
Sbjct: 275 FDNISKDKAIDILKLSKRETEIYNALDENNQVRTFENIESIIDYYIDVRKRFLIKQKDFD 334

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
                  ++  V+ L+ + +   +  +I+   + + +            E+  D +L L 
Sbjct: 335 LKVLENDLNINVQKLRFVKLIIDSELQIMKRSKKDIELDLESKGFIKF-EDSYDYLLKLP 393

Query: 436 LRSLRKLEEYQIKSELDNLLAEKE--KIDSLLNSGKQQWNQIACEIR 480
           + S       ++      + A+ E  K      +  +  + I   + 
Sbjct: 394 IHSFTNETFEKLVQNAKEIKAKFETLKNLDTFKNYVESLDSIKNILT 440


>gi|7682335|gb|AAF67223.1|AF144772_1 topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 44/61 (72%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
             HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +L
Sbjct: 1   NFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLL 60

Query: 145 Q 145
           Q
Sbjct: 61  Q 61


>gi|118175423|gb|ABK76268.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 54

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/54 (64%), Positives = 43/54 (79%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           K HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +
Sbjct: 1   KYHPHGDIAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMEK 54


>gi|120969678|gb|ABM45913.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 54

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/54 (62%), Positives = 43/54 (79%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           K HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDG +AAA RYTE RM +
Sbjct: 1   KYHPHGDTAVYNTIVRMAQDFAMRYVLVDGQGNFGSIDGLAAAAMRYTEIRMAK 54


>gi|332755279|gb|EGJ85643.1| DNA gyrase subunit A domain protein [Shigella flexneri K-671]
          Length = 72

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 6  ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
          +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1  MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66 LDFGAAFK 73
           D+  A+K
Sbjct: 57 NDWNKAYK 64


>gi|294338321|emb|CBJ94360.1| Possible DNA topoisomerase (medium subunit) [Campylobacter phage
           CPt10]
          Length = 442

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/467 (15%), Positives = 159/467 (34%), Gaps = 38/467 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S++         Y+  +   R I    DG K   R+II+   +  L+          I  
Sbjct: 5   SVQDYFLNELTNYSCYSTL-RMIASSIDGLKNSSRKIINTALDKKLNTETK----VSIFD 59

Query: 81  EVIGKL--HPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            ++     + HG  S    +  +A  +      PL+ G+GNFG+   +  AA RY   + 
Sbjct: 60  NMVQSYTQYLHG--SCSGVIQNMAASYTGSNNIPLLEGKGNFGSRFINEPAAPRYVYVKN 117

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT-SGIAVGMATSIPSHN 195
            +    +   + +  V     +   + EPV +    P L+ NG+ +G+A G   +I   +
Sbjct: 118 KKYINDLF-DIKD--VLISQNFEGSEIEPVFYVPSLPILVLNGSMNGLASGFKQNILPRS 174

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           +  + +               L  YI G          +    +VE        +     
Sbjct: 175 LDSVIK------YIKTGKKVDLKPYIAG---------FKGTVELVEDASSNNTQWNFIGV 219

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             V +        ++TEIP  ++ ++ +E +  LI +K+I   +D+ D+  ++ +  +  
Sbjct: 220 VEVNKNKA-----IITEIPPFIEYTKYLEILDNLIESKKIKNYKDLSDQRNQEFKFEVIF 274

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +       +        + E    L+ N            +D  +        +     
Sbjct: 275 FDNISKDKAIDILKLSKRETEIYNALDENNQVRTFENIESIIDYYIDVRKRFLIKQKDFD 334

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
                  ++  V+ L+ + +   +  +I+   + + +            E+  D +L L 
Sbjct: 335 LKVLENDLNINVQKLRFVKLIIDSELQIMKRSKKDIELDLESKGFIKF-EDSYDYLLKLP 393

Query: 436 LRSLRKLEEYQIKSELDNLLAEKE--KIDSLLNSGKQQWNQIACEIR 480
           + S       ++      + A+ E  K      +  +  + I   + 
Sbjct: 394 IHSFTNETFEKLVQNAKEIKAKFETLKNLDTFKNYVESLDSIKNILT 440


>gi|7682337|gb|AAF67224.1|AF144773_1 topoisomerase IV subunit A [Streptococcus oralis]
          Length = 61

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 44/61 (72%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
             HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +L
Sbjct: 1   NFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLL 60

Query: 145 Q 145
           Q
Sbjct: 61  Q 61


>gi|7682339|gb|AAF67225.1|AF144774_1 topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 2   FHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 61


>gi|129560499|dbj|BAF48800.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 62

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 43/60 (71%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRRI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP
Sbjct: 1   KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYP 60


>gi|262411032|gb|ACY66882.1| GyrA [Salmonella enterica]
          Length = 63

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 47/55 (85%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
           RR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYDS+VR+AQPF  RY
Sbjct: 9   RRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSIVRMAQPFSLRY 63


>gi|218658888|ref|ZP_03514818.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 367

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 147/376 (39%), Gaps = 56/376 (14%)

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+T F  NM  L+ G  P+ + L  +L+ ++  R EV+ RR+ F ++    R  +L GL 
Sbjct: 1   MQTSFGCNMVALN-GGKPEQLTLLDMLRAFVTFREEVVSRRTKFLLRKARERAHVLVGLA 59

Query: 395 IAYLNIDEIIAIIRNEDK-----------------------------PKPVMVSRFSLTE 425
           IA  NIDE+I +IR                                  +      ++L+E
Sbjct: 60  IAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDMTYNLSE 119

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL LRL  L  L   +I  EL+ +  E      +L+S  +    +  E+  V++ 
Sbjct: 120 EQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDE 179

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F        RRT   +          + +I +E + V +S+ G+I+          +   
Sbjct: 180 FGTP-----RRTEIVDGGLEMD---DEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGG 231

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
              S +  ++ D +      +T   +L  S+ G  Y      L   +    G+A+  ++ 
Sbjct: 232 KGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLP 291

Query: 596 LNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEE 648
           L   + I T               ++  +++G     + S+ +   R GK  +K+    +
Sbjct: 292 LAPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVHVNRNGKIAMKLEEEGD 351

Query: 649 KMKLVVKVTG-DHVAV 663
           ++  V   T  D V +
Sbjct: 352 EILSVETCTEHDDVLL 367



 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 2/59 (3%)

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           DGG+       I      +  +   Y +          +RGG G        R   F+S
Sbjct: 190 DGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM--TTRDEDFVS 246


>gi|323695908|gb|ADX99578.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
 gi|323695910|gb|ADX99579.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 60

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 47/60 (78%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           G+LHPHGD+SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E +
Sbjct: 1   GQLHPHGDRSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQL 60


>gi|282599156|ref|YP_003359073.1| gp52 topoisomerase II medium subunit [Deftia phage phiW-14]
 gi|257219226|gb|ACV50241.1| gp52 topoisomerase II medium subunit [Deftia phage phiW-14]
          Length = 449

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 87/476 (18%), Positives = 170/476 (35%), Gaps = 39/476 (8%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           K +S+   ++  + AYA    + R IP + DG KP  R+IIH   E     G    K A 
Sbjct: 2   KEISISQHIQGDHKAYATYDNQ-RNIPHIADGLKPSLRKIIHTAIET--MRGKEEVKVAA 58

Query: 78  I---VGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +     + + +   HG+ S+ D++V L + +      PL+  QG FG +  + A+  RY 
Sbjct: 59  LGSRASD-LTEY-GHGEDSIIDAVVTLGRNYRGTNNLPLLQKQGQFGTMVDNDASEPRYI 116

Query: 133 EA-RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
              R   ++    +  D   +DF+ +   +  EPV F    P +L N +SG+  G ++ I
Sbjct: 117 HVSRHANLSH-CFKEEDRAILDFQVS-EGKTIEPVFFLPPLPLVLINASSGVGNGYSSKI 174

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
              + Q + E + A+++        +      P FP                  G     
Sbjct: 175 LPRSPQALIEMSKAILNE-----TPINPEWSLPHFPGFK-GRVKATGPCSYEIHGAIQLN 228

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
            +A+     +          +  YQ ++ +  E +  L          D    + +   I
Sbjct: 229 PKAKTEFTIIDLPP------DSKYQYEQFKERELLPLLDSKTIKNFESD---STEQAWSI 279

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG----ILKEWLAH 367
            +           L++ + M+  +     +      + R P    L        + ++  
Sbjct: 280 KVQSTREFAQHPELVKRMGMILRVTENLTVWTWDGQLKRYPTAEALLRDWLVGREYYMEK 339

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR+    RS+  M  +  +VE LK     +     +              +      +  
Sbjct: 340 RRQSEIARSTKEMNWLLVKVEFLKWWNANHNQAVRMSNDEIKSS--FTSTLGDLKFDDEM 397

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +  +L L + SL+      +++  D + +    ++S           I  ++ E K
Sbjct: 398 LSKLLALPVSSLKMSGIEALQNAHDEVESYVRFMESTTA-----KAMIITDMEEYK 448


>gi|32453406|gb|AAP58315.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 60

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE +L+ +
Sbjct: 1   PHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDI 60


>gi|2598665|dbj|BAA23308.1| CfparC [Citrobacter freundii]
 gi|2780357|dbj|BAA24279.1| parC [Enterobacter cloacae]
          Length = 49

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 39/47 (82%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWG 47


>gi|18202021|sp|O33149|GYRA_MYCMA RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mma
           gyrA intein
 gi|2546990|emb|CAA05167.1| DNA gyrase subunit A [Mycobacterium malmoense]
          Length = 473

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 38/49 (77%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +G  HPHG+ S+Y++LVR+AQP+  RYPL++GQGNFG+   +  AA RY
Sbjct: 1   MGNYHPHGNASIYNTLVRMAQPWSLRYPLVNGQGNFGSPGNNPPAAMRY 49


>gi|129560501|dbj|BAF48801.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|129560503|dbj|BAF48802.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 62

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 43/60 (71%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRRI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP
Sbjct: 1   KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYP 60


>gi|153875483|ref|ZP_02003265.1| DNA topoisomerase IV, A subunit [Beggiatoa sp. PS]
 gi|152068053|gb|EDN66735.1| DNA topoisomerase IV, A subunit [Beggiatoa sp. PS]
          Length = 173

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 9/156 (5%)

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDH 660
              + D+    L+ S  G  F++   ++    + GK  L +  + K+   + +     ++
Sbjct: 2   HVLLGDAEVSFLLASDAGYGFLINLEDLYTKNKAGKAILTLPPDAKILRPLPIAEPETEY 61

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICE-GLTWIDS 714
            AVV     L I  + ++P + +GKGV+L        KD      +     E  +  +  
Sbjct: 62  YAVVTSAGYLSIVPVLELPRLPKGKGVKLLGIPAKSKKDKESVVALTLLNPEIDILTLYV 121

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R     E D+  +  +R   G  +P+GF +  + 
Sbjct: 122 GKRHLTLKERDIEAYTMERSRRGQKLPRGFQKVDRI 157


>gi|313609053|gb|EFR84774.1| DNA topoisomerase 4 subunit A [Listeria monocytogenes FSL F2-208]
          Length = 228

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 56/161 (34%), Gaps = 5/161 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVK 655
              + ++    +    + L V+  G       +        K    +K+  ++++  V  
Sbjct: 1   EEIRSVIAIQAFTEEQRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHL 60

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWI 712
           + G + + +  +N   L +++ +IPE   R  GV+  + K    +   +     E    +
Sbjct: 61  IDGTEDIFLATKNGYGLRYAVAEIPESGARTAGVKAINLKQDDMVIGGVVLMPNEQKHIL 120

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-GKFLS 752
            +  R   +           R   G L+ +    +  +F+ 
Sbjct: 121 LATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPHRFIG 161



 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 7/130 (5%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
            R L ++ +G        N    R       + I L  + ++++  + D T  + + +  
Sbjct: 16  QRFLFVTKNGMTKQSAITNYKPQRYSK--SMMAIKLKGDDELLSVHLIDGTEDIFLATKN 73

Query: 621 GNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENRKLLIFSI 675
           G       +EI        G   + +  ++ +   V +      H+ +  +   L     
Sbjct: 74  GYGLRYAVAEIPESGARTAGVKAINLKQDDMVIGGVVLMPNEQKHILLATQRGSLKQMKA 133

Query: 676 DQIPEMSRGK 685
            +   +SR K
Sbjct: 134 SEFEPISRAK 143


>gi|289808119|ref|ZP_06538748.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 346

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 102/343 (29%), Positives = 164/343 (47%), Gaps = 47/343 (13%)

Query: 230 GIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
             I+  R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAE
Sbjct: 11  PPIINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAE 70

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
           L+  KR+  +  +RDES +D   ++    R    ++++ +++  + ++  F +NM  L  
Sbjct: 71  LVKDKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-H 129

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
              P++M L  I+  ++ HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR
Sbjct: 130 HGQPKIMNLKDIISAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIR 189

Query: 409 NEDKPKP-------------------------------------VMVSRFSLTENQVDAI 431
               P                                       V   ++ LTE Q  AI
Sbjct: 190 RAPTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAI 249

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+  +++ F     
Sbjct: 250 LDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDE-- 307

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
              RRT   E++        + +I +E + V +S++G+++   
Sbjct: 308 ---RRT---EITANSADINIEDLISQENVVVTLSHQGYVKYQP 344


>gi|37542701|gb|AAM13689.1| DNA gyrase [Mycobacterium celatum]
          Length = 147

 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                   + I        Y+    L++ +  G     + ++  +N   G   + +   +
Sbjct: 40  NWWAFKPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDGD 99

Query: 649 KMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQS 691
           ++   V  +  D + +V  N + + FS     +  M R   GV+   
Sbjct: 100 ELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMR 146



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 643 KVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG-I 697
               EE++  V+++       ++ +   N  +    +    + +R  G+   + +DG  +
Sbjct: 43  AFKPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDF-DSNRSGGIVAINLRDGDEL 101

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
              +     + L  + + G+S   S  D       R   G    + 
Sbjct: 102 VGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRV 147


>gi|116282953|gb|ABJ97452.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 51

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/51 (62%), Positives = 39/51 (76%)

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
           Y ++VR+AQ F  RYPL  G GNFG+ DGD AAA RYTEAR+T +AEL+L 
Sbjct: 1   YGAMVRMAQDFTLRYPLNDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLS 51


>gi|163788233|ref|ZP_02182679.1| DNA gyrase A subunit [Flavobacteriales bacterium ALC-1]
 gi|159876553|gb|EDP70611.1| DNA gyrase A subunit [Flavobacteriales bacterium ALC-1]
          Length = 183

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT--WIDSAGRS 718
            +  ++ K + F   +   M R   GVR    +D    +VI     + +    +  +   
Sbjct: 1   MLALKSGKAIRFEEAKTRPMGRNASGVRGIRLQDENTDEVIGMIAVDDMDSNILVVSENG 60

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +     +  RGG G        ++G  +S
Sbjct: 61  YGKRSSLEDYRITNRGGKGVKTISITEKTGNLVS 94



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 6/146 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKG 621
           +L L +        A     GR       + +   +  +++     D     +LVVS  G
Sbjct: 1   MLALKSGKAIRFEEAKTRPMGRNASGVRGIRLQDENTDEVIGMIAVDDMDSNILVVSENG 60

Query: 622 NAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
                   +     R GK      +   +   + +      D + ++ ++   +  ++  
Sbjct: 61  YGKRSSLEDYRITNRGGKGVKTISITEKTGNLVSIKNVTDEDDLMIINKSGIAIRMAVAD 120

Query: 678 IPEMSRG-KGVRLQSYKDGGISDVIC 702
           +  M R  +GV+L + K       + 
Sbjct: 121 LRVMGRATQGVKLINLKGKDSIAAVA 146


>gi|313103856|pdb|3NO0|A Chain A, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
 gi|313103857|pdb|3NO0|B Chain B, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
 gi|313103858|pdb|3NO0|C Chain C, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
          Length = 276

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 63/174 (36%), Gaps = 23/174 (13%)

Query: 597 NHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV- 654
           +  + IV AF+ +    +LL+ + KG    +  +E     + G   +K++  +++  +  
Sbjct: 65  SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQ-GMPIIKLTEGDEVVSIAS 123

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPE-MSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
            V   H+ +  +  ++  FS+ ++P      +GV+    +    +  +     E    + 
Sbjct: 124 SVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGE-PYLLV 182

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGS------------LVPK------GFPRSGK 749
              +   +  +        RG  G+            +  K         ++GK
Sbjct: 183 ITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGK 236



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 59/161 (36%), Gaps = 9/161 (5%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           R+LL +  G    +P                +I L    ++V+         +L+ + KG
Sbjct: 82  RLLLATKKGYVKKIPLAEFEYKAQ----GMPIIKLTEGDEVVSIASSVDETHILLFTKKG 137

Query: 622 NAFIVEESEIIANT--RKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
                   E+  +T   +G   +K+   ++   +    G+ ++ V+    ++   S ++I
Sbjct: 138 RVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197

Query: 679 PEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           P+ +R  GV+         + V    I E +  + +     
Sbjct: 198 PKTNR--GVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGK 236



 Score = 57.9 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 50/150 (33%), Gaps = 12/150 (8%)

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVT--G 658
           +V       T  L +VS++G  + +  S+ +  ++     + + S E+ +         G
Sbjct: 26  VVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSK-----VSLKSREEKIVGAFIREKFG 80

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + + +  +   +    + +  E  + +G+ +    +G     I   + E    +    + 
Sbjct: 81  NRLLLATKKGYVKKIPLAEF-EY-KAQGMPIIKLTEGDEVVSIASSVDE-THILLFTKKG 137

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                +         G  G    K   ++ 
Sbjct: 138 RVARFSVREVPPSTPGARGVQGIK-LEKND 166



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 15/150 (10%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            ILL +  G+        +         +Q  I L  N +     +++    LLV+++KG
Sbjct: 129 HILLFTKKGRVARFSVREVPPSTPGARGVQG-IKLEKNDETSGLRIWNGEPYLLVITAKG 187

Query: 622 NAFIVEESEIIANTRKGKTFLKVSS-EEKMKLVVKVTGD-HVAVVGENRKLL--IFSIDQ 677
               +   EI    R G    +VS  ++ +  ++ +  +  + +  +N K      +   
Sbjct: 188 RVKKISHEEIPKTNR-GVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246

Query: 678 IPEMSRGKGVRLQ-----SYKDGGISDVIC 702
           IP  ++    +         +D  I  V+ 
Sbjct: 247 IPLSTK----KSIPRTRWKLEDDEIIKVVI 272


>gi|309807647|ref|ZP_07701589.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 01V1-a]
 gi|308169113|gb|EFO71189.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 01V1-a]
          Length = 323

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 97/261 (37%), Gaps = 21/261 (8%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           M+ +E + V++S  G+++     S    D +      GD +       T   + + +  G
Sbjct: 1   MLSEEDVRVLVSANGYLKRSSLRSYQSTDSADNGLPSGDEVIFDKTVSTLSNLYIFTNKG 60

Query: 571 KAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
                P         R  G+ +   I L +++ I++ F     +S    L+ ++ G    
Sbjct: 61  NLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNSDLIFLITTNDGYIKQ 120

Query: 626 VEESEIIANT---RKGKTFLKVSSE-EKMKLVVKVTGD---HVAVVGENRKLLIFSIDQI 678
           V  S++        +    +K+  +   + +V ++  D    + +V  N   L F ++++
Sbjct: 121 VALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEV 180

Query: 679 PEMS-RGKGVRLQSYKDGG--ISDVICFKIC--EGLTWIDSAGRSYNRSENDLLGWLGKR 733
           P +  R  GV+  + K+    +   I F       L       R   +     L     R
Sbjct: 181 PLVGPRAAGVKSINLKNDDDYVVSAITFDPKCLNSLKLGIVTQRGAFKQLQVDLVNKFTR 240

Query: 734 GGVGSLVPKGFP-RSGKFLSS 753
              GS++ +    +  + +++
Sbjct: 241 AKRGSMILRELKTKPHRIVAA 261


>gi|309806045|ref|ZP_07700068.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167564|gb|EFO69720.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 03V1-b]
          Length = 330

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 97/261 (37%), Gaps = 21/261 (8%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           M+ +E + V++S  G+++     S    D +      GD +       T   + + +  G
Sbjct: 1   MLSEEDVRVLVSANGYLKRSSLRSYQSTDSADNGLPSGDEVIFDKTVSTLSNLYIFTNKG 60

Query: 571 KAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
                P         R  G+ +   I L +++ I++ F     +S    L+ ++ G    
Sbjct: 61  NLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNSDLIFLITTNDGYIKQ 120

Query: 626 VEESEII-ANTRKGKTFLKVSSEEKMKLVVKVT------GDHVAVVGENRKLLIFSIDQI 678
           V  S++    T K +  + +  ++    V+ V        + + +V  +   L F ++++
Sbjct: 121 VALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSGSDNEILLVTNSAYALRFDVNEV 180

Query: 679 PEMS-RGKGVRLQSYKDGG--ISDVICFKIC--EGLTWIDSAGRSYNRSENDLLGWLGKR 733
           P +  R  GV+  + K+    +   I F       L       R   +     L     R
Sbjct: 181 PLVGPRAAGVKSINLKNDDDYVVSAITFDPECLNSLKLGIVTQRGAFKQLQVDLVNKFTR 240

Query: 734 GGVGSLVPKGFP-RSGKFLSS 753
              GS++ +    +  + +++
Sbjct: 241 AKRGSMILRELKTKPHRIVAA 261


>gi|227553417|ref|ZP_03983466.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
 gi|227177450|gb|EEI58422.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
          Length = 261

 Score =  111 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 15/191 (7%)

Query: 572 AYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFI 625
               P   L   R           +++L  ++ I+  + Y     T   + ++  G    
Sbjct: 1   MIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQ 60

Query: 626 VEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDH---VAVVGENRKLLIFSIDQI 678
            + ++         +  + +K+ S+ +++  V          V +V      L + + ++
Sbjct: 61  TKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV 120

Query: 679 PEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGV 736
           P +  +  GV+  + K+            EG T  +    R   +           R   
Sbjct: 121 PVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKR 180

Query: 737 GSLVPKGFPRS 747
           G +V +   ++
Sbjct: 181 GLMVLRELKKN 191


>gi|32453410|gb|AAP58317.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|32453420|gb|AAP59413.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp.
           aureus]
          Length = 55

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 40/55 (72%)

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           HGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE +
Sbjct: 1   HGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEEL 55


>gi|4545083|gb|AAD22385.1| DNA gyrase A [Enterobacter aerogenes]
          Length = 45

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/45 (71%), Positives = 39/45 (86%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   KSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNF 45


>gi|85376453|gb|ABC70469.1| DNA topoisomerase IV subunit A [Listonella anguillarum]
          Length = 49

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           K HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYT
Sbjct: 1   KYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 49


>gi|202073603|gb|ACH96272.1| topoisomerase IV ParC subunit [Waddlia chondrophila WSU 86-1044]
 gi|202073605|gb|ACH96273.1| topoisomerase IV ParC subunit [Waddlia chondrophila]
          Length = 73

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 9/81 (11%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
            DG KPV RRI+H + ++         K A + G+ +   HPHGD ++ D+LV +A    
Sbjct: 1   VDGLKPVQRRILHTLYKI---HDGKLHKVANVAGQTMA-YHPHGDAAIIDALVNMA---- 52

Query: 107 QRYPLISGQGNFGNI-DGDSA 126
            +   +  QGNFGNI  GD A
Sbjct: 53  NKGFFLDCQGNFGNIYTGDPA 73


>gi|325989385|ref|YP_004249084.1| similar to DNA gyrase subunit alpha (probable fragment) [Mycoplasma
           suis KI3806]
 gi|323574470|emb|CBZ40120.1| similar to DNA gyrase, A subunit (probable fragment) [Mycoplasma
           suis]
          Length = 335

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 29/212 (13%)

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--------------NQDIVTA 605
            D +L+++  GK Y   A  LL  +    +   L+ L H              ++ I+  
Sbjct: 56  NDDLLIITNKGKIYRTQANQLLRVKKELSSENKLLQLQHVRELLDLDSSTFRDDEQIIKI 115

Query: 606 FVYDSTCKL-----LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGD 659
              + +  L      + S  G    ++       ++ G   + +  E+++   + V   D
Sbjct: 116 INVEPSKYLDSSFLFLASKDGMIKKIKMMNFQNASKSGGIVMGLQGEDEVVSALIVRDAD 175

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY------KDGGISDVICFKICEGLTWI 712
            + +     +++ F    + ++ +   GVR          K+G +         +G    
Sbjct: 176 EILLTSSFGRVVRFKSIDLRDVGKTAMGVRGIKLVNSKGEKEGELISASS--NADGKEVF 233

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                   +        +  RG  G L  KG+
Sbjct: 234 VLTNLGKGKWVYIDHFRMTSRGVAGVLSQKGY 265


>gi|49425333|gb|AAT66027.1| DNA topoisomerase IV subunit A [Corynebacterium jeikeium]
          Length = 58

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +V G  HP+GD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA++
Sbjct: 1   DVAGPYHPNGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 56


>gi|229891675|sp|P0C9C1|TOP2_ASFWA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 81/490 (16%), Positives = 176/490 (35%), Gaps = 29/490 (5%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+    +  
Sbjct: 671  LTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAGGVKC- 728

Query: 66   LDFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF---VQRYPLISGQGNFGN 120
                   +K  +  G V      H HGD S+  S+++ AQ +      YP+  G G+FG+
Sbjct: 729  FASNNRERKVFQFGGYVADHMFYH-HGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGSFGS 787

Query: 121  I--DGDSAAAYRYTEARM-TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
                G  A + RY   ++ ++  + +    D   + +    + + +EP  +    P  + 
Sbjct: 788  RHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPLAIM 846

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
               +  + G   +  +  +++I     A +D  + + +  L +       T   +  S  
Sbjct: 847  EYGANPSEGWKYTTWARQLEDILALVRAYVD--KNNPKHELLHYAIKHKITILPLRPSNY 904

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            +     +     +     + + E       I +TE+P +V     IE I +   + R+  
Sbjct: 905  NFKGHLKRFGQYYYSYGTYVISEQR---NIITITELPLRVPTVAYIESIKK--SSNRMTF 959

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQ 353
            +E+I D S+ +   +L     +    ++ E             L +            P+
Sbjct: 960  IEEIIDYSSSETIEILVKLKPNSLNRIMEEFKCTEEQDSIENFLRLRNCLHSHLNFVKPK 1019

Query: 354  -----VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
                       IL  WL +RRE+  +R       +  R+ +   ++       E+     
Sbjct: 1020 GGIIEFNTYYEILYAWLPYRRELYQKRLMREHAVLKLRIIMETAIVRYINESAELNLSHY 1079

Query: 409  NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
             ++K    ++S           I++    S+ +    +        +   +  + L+ + 
Sbjct: 1080 EDEKEASRILSEHGFPPLNQTLIISPEFASI-EELNQKALQGCYTYILSLQARELLIAAK 1138

Query: 469  KQQWNQIACE 478
             ++  +I   
Sbjct: 1139 TRRVEKIKKM 1148


>gi|325972892|ref|YP_004249956.1| DNA gyrase C-terminal domain protein [Mycoplasma suis str.
           Illinois]
 gi|323651494|gb|ADX97576.1| DNA gyrase C-terminal domain protein [Mycoplasma suis str.
           Illinois]
          Length = 335

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 71/212 (33%), Gaps = 29/212 (13%)

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--------------NQDIVTA 605
            D +L+++  GK Y   A  LL  +    +   L+ L H              ++ I+  
Sbjct: 56  NDDLLIITNKGKIYRTQANQLLRVKKELSSENKLLQLQHVRELLDLDSSTFRDDEQIIKI 115

Query: 606 FVYDSTCKL-----LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGD 659
              + +  L      + S  G    ++       ++ G   + +  E+++   + V   D
Sbjct: 116 INVEPSKYLDSSFLFLASKDGMIKKIKMMNFQNASKSGGIVMGLQGEDEVVSALIVRDAD 175

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY------KDGGISDVICFKICEGLTWI 712
            + +     +++ F    + ++ +   GVR          K+G +         +G    
Sbjct: 176 EILLTSSFGRVVRFKSIDLRDVGKTAMGVRGIKLVNSKGEKEGELISASS--NADGKEVF 233

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                   +  +     +  RG  G L  KG+
Sbjct: 234 VLTNLGKGKWVHIDHFRMTSRGVAGVLSQKGY 265


>gi|71899875|ref|ZP_00682024.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
 gi|71730392|gb|EAO32474.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
          Length = 156

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 9/154 (5%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHV 661
               D+    ++ SS G  FI     +    + GK  + ++   ++  +  +T    D +
Sbjct: 1   MASADNDKLFVLASSHGYGFITRFENLTGRNKAGKAMIHLTPGAQVMGLAPLTNVQHDRI 60

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICEGLTWIDSAG 716
             V     LL  +  ++PE+ +GKG +L            +  VI       L  + S  
Sbjct: 61  VAVTSAGNLLAIAASELPELDKGKGNKLIDIPKTKLATERLVAVIAVASSHTL-LLYSGE 119

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R+   S  DL  +L  RG  G L+P+G+ +    
Sbjct: 120 RTMRLSFKDLEAYLDTRGSRGRLLPRGWHKIDTL 153


>gi|229891674|sp|P0C9C0|TOP2_ASFP4 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 81/490 (16%), Positives = 176/490 (35%), Gaps = 29/490 (5%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+    +  
Sbjct: 671  LTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAGGVKC- 728

Query: 66   LDFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF---VQRYPLISGQGNFGN 120
                   +K  +  G V      H HGD S+  S+++ AQ +      YP+  G G+FG+
Sbjct: 729  FASNNRERKVFQFGGYVADHMFYH-HGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGSFGS 787

Query: 121  I--DGDSAAAYRYTEARM-TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
                G  A + RY   ++ ++  + +    D   + +    + + +EP  +    P  + 
Sbjct: 788  RHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPLAIM 846

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
               +  + G   +  +  +++I     A +D  + + +  L +       T   +  S  
Sbjct: 847  EYGANPSEGWKYTTWARQLEDILALVRAYVD--KNNPKHELLHYAIKHKITILPLRPSNY 904

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            +     +     +     + + E       I +TE+P +V     IE I +   + R+  
Sbjct: 905  NFKGHLKRFGQYYYSYGTYVISEQR---NIITITELPLRVPTVAYIESIKK--SSNRMTF 959

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQ 353
            +E+I D S+ +   +L     +    ++ E             L +            P+
Sbjct: 960  IEEIIDYSSSETIEILVKLKPNSLNRIMEEFKCTEEQDSIENFLRLRNCLHSHLNFVKPK 1019

Query: 354  -----VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
                       IL  WL +RRE+  +R       +  R+ +   ++       E+     
Sbjct: 1020 GGIIEFNTYYEILYAWLPYRRELYQKRLMREHAVLKLRIIMETAIVRYINESAELNLSHY 1079

Query: 409  NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
             ++K    ++S           I++    S+ +    +        +   +  + L+ + 
Sbjct: 1080 EDEKEASRILSEHGFPPLNQTLIISPEFASI-EELNQKALQGCYTYILSLQARELLIAAK 1138

Query: 469  KQQWNQIACE 478
             ++  +I   
Sbjct: 1139 TRRVEKIKKM 1148


>gi|213618945|ref|ZP_03372771.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 288

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 87/210 (41%), Positives = 125/210 (59%), Gaps = 3/210 (1%)

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGS 265
           IDN +ISIE L+E+I GPDFPT   I+  R  I E+YR GRG   +RAR  VE +   G 
Sbjct: 1   IDNEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGR 59

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++    R    +++
Sbjct: 60  ETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEVKRDAVGEVV 119

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR+ F ++    
Sbjct: 120 LNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRRTIFELRKARD 178

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
           R  IL+ L IA  NID II +IR    P  
Sbjct: 179 RAHILEALAIALANIDPIIELIRRAPTPAE 208


>gi|299741517|ref|XP_001834519.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
 gi|298404747|gb|EAU87295.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
          Length = 966

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 76/226 (33%), Gaps = 58/226 (25%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T ++  ++ +     + +  + ++++    R+IP +  G KP  R++I    +  L 
Sbjct: 691 KPGTFLDHRLEEIPYSEFINKELILFSMANNV-RSIPSIAYGLKPGQRKVIWGCFKRKL- 748

Query: 68  FGAAFKKS---ARIV-GEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG 119
                 K    AR   G +      H HG+ S+  +++ LAQ F       L+S      
Sbjct: 749 --KKEIKVEIFARSSNGYISEHAAYH-HGEASLAATIINLAQDFVGSNNLALLSP----- 800

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++D D        E                               P       P +L NG
Sbjct: 801 SLDDDVP-----IE-------------------------------PEWHMPTVPMVLING 824

Query: 180 TSGIAVG--MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223
             GI  G  + T+IP +N  +I              +E +  +  G
Sbjct: 825 AEGIGTGSRLDTNIPPYNPIDIVANIR--RKMKGEELEPMTPWWRG 868


>gi|224458668|gb|ACN43197.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 239

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 136/238 (57%), Gaps = 9/238 (3%)

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTE+PYQV K  LIEKIA+L+  K+I  + D+RDES      ++    R  + +++
Sbjct: 2   ERIIVTELPYQVNKGNLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVI 61

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +N+  L     P+V+ L   L+ +L H++ V+ RR+++ ++  + 
Sbjct: 62  LNNLYKQTALQTSFGINLLALVD-GQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEA 120

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL +A  ++D +I++IRN       +  ++ +FSLTE Q  AIL++RL+ L  L
Sbjct: 121 RAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGL 180

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           E  +I+ E  +L+    ++  +L +  +    I  E+ E+KE F+       RRT   
Sbjct: 181 EREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE-----RRTEIV 233


>gi|308743033|gb|ADO39959.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/47 (68%), Positives = 39/47 (82%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQGNFG++
Sbjct: 1   SARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|71842510|gb|AAZ43362.1| GyrA [Escherichia coli]
          Length = 52

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
             +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ 
Sbjct: 1   YVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVD 52


>gi|229891673|sp|P0C9C2|TOP2_ASFK5 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 81/493 (16%), Positives = 176/493 (35%), Gaps = 35/493 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+      G
Sbjct: 671  LTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG----G 725

Query: 66   LD---FGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF---VQRYPLISGQGN 117
            L         +K  +  G V      H HGD S+  S+++ AQ +      YP+  G G+
Sbjct: 726  LKCFASNNRERKVFQFGGYVADHMFYH-HGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGS 784

Query: 118  FGNI--DGDSAAAYRYTEARM-TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            FG+    G  A + RY   ++ ++  + +    D   + +    + + +EP  +    P 
Sbjct: 785  FGSRHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPL 843

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
             +    +  + G   +  +  +++I     A ID  + + +  L +       T   +  
Sbjct: 844  AIMEYGANPSEGWKYTTWARQLEDILALVRAYID--KNNPKHELLHYAIDHKITVLPLRP 901

Query: 235  SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            S  +     +     +     + V E       I +TE+P +V     IE I +   + R
Sbjct: 902  SNYNFKGHLKRFGQYYYSYGTYVVSEQR---NMITITELPLRVPTVAYIESIKK--SSNR 956

Query: 295  IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR---- 350
            +  +E+I D S+ +   +L     +    ++ E             L +           
Sbjct: 957  MAFIEEIVDYSSSETIEILVKLKPNSLSRIIEEFKETEEQNSIENFLRLRNCLHSHLNFV 1016

Query: 351  VPQ-----VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
             P+           IL  WL +RR++  +R       +  R+ +   ++       ++  
Sbjct: 1017 KPKGGIIEFNSYYEILYAWLPYRRDLYQKRLMRERAVLKLRIIMETAIVRYINESADL-N 1075

Query: 406  IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
            +   ED+ +   +           +++     +  +    +        +   +  + L+
Sbjct: 1076 LSHYEDEKEAGRILSEHGFPPLNQSLITSPEFATIEELNQKALQGCYTYILSLQARELLI 1135

Query: 466  NSGKQQWNQIACE 478
             +  ++  +I   
Sbjct: 1136 AAKTRRVEKIKKM 1148


>gi|9628219|ref|NP_042805.1| topoisomerase II [African swine fever virus]
 gi|267149|sp|Q00942|TOP2_ASFB7 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|210654|gb|AAA42735.1| topoisomerase II [African swine fever virus]
 gi|780481|gb|AAA65341.1| topoisomerase II [African swine fever virus]
 gi|162849494|emb|CAN10461.1| Topoisomerase II [African swine fever virus OURT 88/3]
 gi|1097503|prf||2113434DU topoisomerase II
          Length = 1192

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 79/490 (16%), Positives = 174/490 (35%), Gaps = 29/490 (5%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+    +  
Sbjct: 671  LTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAGGVKC- 728

Query: 66   LDFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF---VQRYPLISGQGNFGN 120
                   +K  +  G V      H HGD S+  S+++ AQ +      YP+  G G+FG+
Sbjct: 729  FASNNRERKVFQFGGYVADHMFYH-HGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGSFGS 787

Query: 121  I--DGDSAAAYRYTEARM-TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
                G  A + RY   ++ ++  + +    D   + +    + + +EP  +    P  + 
Sbjct: 788  RHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPLAIM 846

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
               +  + G   +  +  +++I     A +D  + + +  L +       T   +  S  
Sbjct: 847  EYGANPSEGWKYTTWARQLEDILALVRAYVD--KDNPKHELLHYAIKHKITILPLRPSNY 904

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            +     +     +     + + E       I +TE+P +V     IE I +   + R+  
Sbjct: 905  NFKGHLKRFGQYYYSYGTYDISEQR---NIITITELPLRVPTVAYIESIKK--SSNRMTF 959

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQ 353
            +E+I D S+ +   +L     +    ++ E             L +            P+
Sbjct: 960  IEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSHLNFVKPK 1019

Query: 354  -----VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
                       IL  WL +RRE+  +R       +  R+ +   ++       E+  +  
Sbjct: 1020 GGIIEFNSYYEILYAWLPYRRELYQKRLMREHAVLKLRIIMETAIVRYINESAEL-NLSH 1078

Query: 409  NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
             ED+ +   +            ++     +  +    +        +   +  + L+ + 
Sbjct: 1079 YEDEKEASRILSEHGFPPLNHTLIISPEFASIEELNQKALQGCYTYILSLQARELLIAAK 1138

Query: 469  KQQWNQIACE 478
             ++  +I   
Sbjct: 1139 TRRVEKIKKM 1148


>gi|297521997|ref|ZP_06940383.1| DNA gyrase subunit A [Escherichia coli OP50]
          Length = 177

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 2/88 (2%)

Query: 667 NRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K++ F    +  M     GVR     +G     +     EG   + +    Y +    
Sbjct: 2   EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGEGA-ILTATQNGYGKRTAV 60

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  R   G +  K   R+G  + +
Sbjct: 61  AEYPTKSRATKGVISIKVTERNGLVVGA 88



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L     +V+  V      +L  +  G       +E    +R  K  + +   E+   +
Sbjct: 26  IRLGEGDKVVSLIVPRGEGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 85

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD----VICFK 704
              V+V   D + ++ +   L+   + +I  + R  +GV L    +         V    
Sbjct: 86  VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPV 145

Query: 705 ICEGLTWIDSA 715
             E L  ID +
Sbjct: 146 DEEDLDTIDGS 156



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 40/136 (29%), Gaps = 5/136 (3%)

Query: 621 GNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKL-VVKVTGDHVAVVGENRKLLIFSIDQ 677
           G     +ES + A      G   +++   +K+   +V      +    +N      ++ +
Sbjct: 3   GKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGEGAILTATQNGYGKRTAVAE 62

Query: 678 IPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
            P  SR  KGV      +     V   ++ +    +                 +  R   
Sbjct: 63  YPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQ 122

Query: 737 GSLVPKGFPRSGKFLS 752
           G ++ +        + 
Sbjct: 123 GVILIRTAE-DENVVG 137


>gi|121883|sp|P21557|GYRA_HALSQ RecName: Full=DNA gyrase subunit A
 gi|149025|gb|AAB09606.1| DNA gyrase subunit A [Haloferax lucentense]
          Length = 82

 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 1  MGVDNIS--NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
          M  D          +   VK   +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI+
Sbjct: 1  MSSDAPDSFEPGAGIAAEVKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRIL 60

Query: 59 HAMSEMGLDFGAAFKKSARIVG 80
          +AM + G+   ++ +KS+ IVG
Sbjct: 61 YAMHQAGVTSNSSHRKSSSIVG 82


>gi|162849321|emb|CAN10212.1| Topoisomerase II [African swine fever virus Benin 97/1]
          Length = 1192

 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 153/415 (36%), Gaps = 28/415 (6%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+    +  
Sbjct: 671  LTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAGGVKC- 728

Query: 66   LDFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF---VQRYPLISGQGNFGN 120
                   +K  +  G V      H HGD S+  S+++ AQ +      YP+  G G+FG+
Sbjct: 729  FASNNRERKVFQFGGYVADHMFYH-HGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGSFGS 787

Query: 121  I--DGDSAAAYRYTEARM-TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
                G  A + RY   ++ ++  + +    D   + +    + + +EP  +    P  + 
Sbjct: 788  RHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPLAIM 846

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
               +  + G   +  +  +++I     A +D  + + +  L +       T   +  S  
Sbjct: 847  EYGANPSEGWKYTTWARQLEDILALVRAYVD--KDNPKHELLHYAIKHKITILPLRPSNY 904

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            +     +     +     + + E       I +TE+P +V     IE I +   + R+  
Sbjct: 905  NFKGHLKRFGQYYYSYGTYDISEQR---NIITITELPLRVPTVAYIESIKK--SSNRMTF 959

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQ 353
            +E+I D S+ +   +L     +    ++ E             L +            P+
Sbjct: 960  IEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSHLNFVKPK 1019

Query: 354  -----VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
                       IL  WL +RRE+  +R       +  R+ +   ++       E+
Sbjct: 1020 GGIIEFNSYYEILYAWLPYRRELYQKRLMREHAVLKLRIIMETAIVRYINESAEL 1074


>gi|291289555|emb|CBH29212.1| BA71V-P1192R (i7R) [African swine fever virus E75]
          Length = 1145

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 153/415 (36%), Gaps = 28/415 (6%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+    +  
Sbjct: 671  LTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAGGVKC- 728

Query: 66   LDFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF---VQRYPLISGQGNFGN 120
                   +K  +  G V      H HGD S+  S+++ AQ +      YP+  G G+FG+
Sbjct: 729  FASNNRERKVFQFGGYVADHMFYH-HGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGSFGS 787

Query: 121  I--DGDSAAAYRYTEARM-TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
                G  A + RY   ++ ++  + +    D   + +    + + +EP  +    P  + 
Sbjct: 788  RHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPLAIM 846

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
               +  + G   +  +  +++I     A +D  + + +  L +       T   +  S  
Sbjct: 847  EYGANPSEGWKYTTWARQLEDILALVRAYVD--KDNPKHELLHYAIKHKITILPLRPSNY 904

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            +     +     +     + + E       I +TE+P +V     IE I +   + R+  
Sbjct: 905  NFKGHLKRFGQYYYSYGTYDISEQR---NIITITELPLRVPTVAYIESIKK--SSNRMTF 959

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQ 353
            +E+I D S+ +   +L     +    ++ E             L +            P+
Sbjct: 960  IEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSHLNFVKPK 1019

Query: 354  -----VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
                       IL  WL +RRE+  +R       +  R+ +   ++       E+
Sbjct: 1020 GGIIEFNSYYEILYAWLPYRRELYQKRLMREHAVLKLRIIMETAIVRYINESAEL 1074


>gi|284052889|ref|ZP_06383099.1| DNA topoisomerase IV subunit A [Arthrospira platensis str. Paraca]
          Length = 350

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 66/158 (41%), Gaps = 11/158 (6%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVG 665
            +     L+++S++G    +  ++ +  + +G T +K+   +++    +  TGD V +  
Sbjct: 181 AFSDQTDLIMLSAEGKIKRLSGTDFMDLSARGITVMKLKDNDELSYANLAATGDQVVLAT 240

Query: 666 ENRKLLI--FSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLT---WIDSAGRS 718
              +LL    + DQIP M R  +G       K+  +   I       L     +  + + 
Sbjct: 241 SGGRLLRLDINADQIPVMGRTAQGSVATRLRKNEQLVGCITLSSTGELNNKFILLVSEQG 300

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGK---FLSS 753
           Y +  +       +RGG+G+ + +   R+      +++
Sbjct: 301 YFKRISLQSLQRSRRGGIGTQMLQFHSRNDACRGLVAT 338



 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
              L+ ++ +G    V    +     +    ++   +  +   +  T + + ++    K 
Sbjct: 56  EETLVEMTLRGYVRRVTPHNLSRPQSREDITIEAIDDFPVTSYLTTTAETLVIINRMGKA 115

Query: 671 LIFSIDQIPEMS-RGKGVRLQSY 692
              ++  IP +S + +GV L + 
Sbjct: 116 YPLNVADIPSVSLKSRGVPLITL 138


>gi|224458672|gb|ACN43199.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 235

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 136/235 (57%), Gaps = 9/235 (3%)

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +
Sbjct: 1   IVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNN 60

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++T F +N+  L     P+V+ L   L+ +L H++ V+ RR+++ ++  + R  
Sbjct: 61  LYKQTALQTSFGINLLALVD-GQPKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAH 119

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL IA  ++D +I++IRN       +  ++ +FSLTE Q  AIL++RL+ L  LE  
Sbjct: 120 ILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLERE 179

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           +I+ E   L+    ++  +L +  +    I  E+ E+KE F+       RRT   
Sbjct: 180 KIEEEYQTLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE-----RRTEIV 229


>gi|308743035|gb|ADO39960.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/47 (68%), Positives = 39/47 (82%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQGNFG++
Sbjct: 1   SARIVGDVIGKYHPHGDFAVYATIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|308743037|gb|ADO39961.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/47 (68%), Positives = 40/47 (85%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SARIVG+VIGK HPHGD +VY+++VR+AQ F  RY LI GQGNFG++
Sbjct: 1   SARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|303398797|emb|CBW46778.1| P1192R [African swine fever virus Georgia 2007/1]
          Length = 1192

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 79/490 (16%), Positives = 174/490 (35%), Gaps = 29/490 (5%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+    +  
Sbjct: 671  LTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAGGVKC- 728

Query: 66   LDFGAAFKKSARIVGEVIGK--LHPHGDQSVYDSLVRLAQPF---VQRYPLISGQGNFGN 120
                   +K  +  G V      H HGD S+  S+++ AQ +      YP+  G G+FG+
Sbjct: 729  FASNNRERKVFQFGGYVADHMFYH-HGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGSFGS 787

Query: 121  I--DGDSAAAYRYTEARM-TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
                G  A + RY   ++ ++  + +    D   + +    + + +EP  +    P  + 
Sbjct: 788  RHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPLAIM 846

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
               +  + G   +  +  +++I     A +D  + + +  L +       T   +  S  
Sbjct: 847  EYGANPSEGWKYTTWARQLEDILALVRAYVD--KDNPKHELLHYAIKHKITILPLRPSNY 904

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            +     +     +     + + E       I +TE+P +V     IE I +   + R+  
Sbjct: 905  NFKGHLKRFGQYYYSYGTYVISEQR---NIITITELPLRVPTVAYIESIKK--SSNRMTF 959

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQ 353
            +E+I D S+ +   +L     +    ++ E             L +            P+
Sbjct: 960  IEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSHLNFVKPK 1019

Query: 354  -----VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
                       IL  WL +RRE+  +R       +  R+ +   ++       E+  +  
Sbjct: 1020 GGIIEFNTYYEILYAWLPYRRELYQKRLMREHAVLKLRIIMETAIVRYINESAEL-NLSH 1078

Query: 409  NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
             ED+ +   +            ++     +  +    +        +   +  + L+ + 
Sbjct: 1079 YEDEKEASRILSEHGFPPLNHTLIISPEFASIEELNQKALQGCYTYILSLQARELLIAAK 1138

Query: 469  KQQWNQIACE 478
             ++  +I   
Sbjct: 1139 TRRVEKIKKM 1148


>gi|32453408|gb|AAP58316.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 55

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           HGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE +
Sbjct: 1   HGDYSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEEL 55


>gi|33316585|gb|AAQ04611.1| DNA gyrase subunit A [Mycobacterium szulgai]
          Length = 147

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 565 LLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSS 619
             +T G+ Y   A  L        G+ +  L+     + I        Y+    L++ + 
Sbjct: 12  FFTTQGRVYRAKAYELPEALRTARGQHVANLLAFQTEERIAQVIQIKSYEDAPYLVLATQ 71

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ- 677
            G     + ++  +N   G   + +  E+++   V  +  + + +V  N + + FS    
Sbjct: 72  NGLVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSAEEDLLLVSANGQSIRFSATDD 131

Query: 678 -IPEMSRG-KGVRL 689
            +  M R   GV+ 
Sbjct: 132 ALRPMGRATSGVQA 145



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 21/141 (14%)

Query: 615 LVVSSKGNAFIVEESEIIANTRKGK-----TFLKVSSEEKMKLVVKVT--GD--HVAVVG 665
           L  +++G  +  +  E+    R  +       L   +EE++  V+++    D  ++ +  
Sbjct: 11  LFFTTQGRVYRAKAYELPEALRTARGQHVANLLAFQTEERIAQVIQIKSYEDAPYLVLAT 70

Query: 666 ENR-----KLLIFSIDQIPEMSRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSY 719
           +N      KL  F  +      R  G+   + + +  +   +     E L  + + G+S 
Sbjct: 71  QNGLVKKSKLTDFDSN------RSGGIVAINLRGEDELVGAVLCSAEEDLLLVSANGQSI 124

Query: 720 NRSENDLLGWLGKRGGVGSLV 740
             S  D       R   G   
Sbjct: 125 RFSATDDALRPMGRATSGVQA 145


>gi|71842508|gb|AAZ43361.1| GyrA [Escherichia coli]
          Length = 52

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 41/52 (78%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
             +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ 
Sbjct: 1   YVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVD 52


>gi|76800082|ref|ZP_00781975.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|76584618|gb|EAO61431.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
          Length = 245

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 94/248 (37%), Gaps = 13/248 (5%)

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +SRF L+E Q  AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  
Sbjct: 1   MSRFELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKE 60

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSL 533
           E+ EVK  ++ +    R      EV   +   L +             +    +   R+ 
Sbjct: 61  EMDEVKRKYADA---RRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQ 117

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQ 591
           K     +        D ++  +   T D +L  +  G+ Y L A  +       +   I 
Sbjct: 118 KRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIV 177

Query: 592 LLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            L+ L+  + I T         +       + +G       SE     + G   + +   
Sbjct: 178 NLLKLDEGETIQTIINARKEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKEN 237

Query: 648 EKMKLVVK 655
           +++  V+ 
Sbjct: 238 DELINVLL 245



 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 10/125 (8%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK-LVVKVTGDHVAVVGENRKL 670
           L+ +S+KG    + + E  A  R  +G     V++++ ++ LV   T D V       ++
Sbjct: 97  LITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRV 156

Query: 671 LIFSIDQIPEMSR-GKG---VRLQSYKDGGISDVICFKICE---GLTWIDSAGRSYNRSE 723
                 +IPE  R  KG   V L    +G     I     E      +  +  +   +  
Sbjct: 157 YRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDVANKYFFFTTQQGIVKRT 216

Query: 724 NDLLG 728
           +    
Sbjct: 217 SVSEF 221



 Score = 37.4 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            I  + + Y +          KRGG G 
Sbjct: 97  LITLSNKGYIKRLAQDEFRAQKRGGRGI 124


>gi|46203585|ref|ZP_00051310.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II,
          topoisomerase IV), A subunit [Magnetospirillum
          magnetotacticum MS-1]
          Length = 66

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query: 9  SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
          +   V  +++   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR++ AM ++ LD 
Sbjct: 2  TQPAVTGDIRDTPLADALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAMRQLKLDP 61

Query: 69 GAAFK 73
             F+
Sbjct: 62 SGGFR 66


>gi|270650935|ref|ZP_06222222.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
 gi|270317177|gb|EFA28783.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
          Length = 157

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 28/120 (23%)

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--------------------------D 694
            +     +++ F+ + +  M R   GVR                               D
Sbjct: 1   MLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEEISDDNAEASLD 60

Query: 695 GGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             I  V+   + +G    + +    Y +           R   G +  K   R+GK +++
Sbjct: 61  LNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 120



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
           +   +V+  V      +L  +  G     + SE    +R  K  + +       K+    
Sbjct: 62  NIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAAT 121

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           +V   D + ++ +   L+   + ++  + R  +GVR
Sbjct: 122 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVR 157



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 44/157 (28%), Gaps = 32/157 (20%)

Query: 615 LVVSSKGNAFIVEESEIIANTR--KGKTFLKV------SSEEKMKLVVKVTGDH------ 660
           ++ SS+G      E+ + A  R   G   +K+      S +E    + +++ D+      
Sbjct: 1   MLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEEISDDNAEASLD 60

Query: 661 -----------------VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
                            +    +N       + + P  SR  KGV      +     V  
Sbjct: 61  LNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 120

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            ++ E    +                 +  R   G  
Sbjct: 121 TQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVR 157


>gi|464905|sp|P34203|TOP2_ASFM2 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|58648|emb|CAA78614.1| DNA topoisomerase type II [African swine fever virus]
 gi|450712|emb|CAA50820.1| DNA topoisomerase type II [African swine fever virus]
          Length = 1191

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 74/460 (16%), Positives = 162/460 (35%), Gaps = 34/460 (7%)

Query: 39   KERAIPDLRDGFKPVHRRIIHAMSEMGLD---FGAAFKKSARIVGEVIGK--LHPHGDQS 93
             ER IP+  DG     R+I+      GL         +K  +  G V      H HGD S
Sbjct: 702  IERQIPNFLDGMTRARRKILAG----GLKCFASNNRERKVFQFGGYVADHMFYH-HGDMS 756

Query: 94   VYDSLVRLAQPF---VQRYPLISGQGNFGNI--DGDSAAAYRYTEARM-TQVAELILQGV 147
            +  S+++ AQ +      YP+  G G+FG+    G  A + RY   ++ ++  + +    
Sbjct: 757  LNTSIIKAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQLASEFIKTMFPAE 816

Query: 148  DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            D   + +    + + +EP  +    P  +    +  + G   +  +  +++I     A +
Sbjct: 817  DSWLLPYVFE-DGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYV 875

Query: 208  DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            D  + + +  L +       T   +  S  +     +     +     + V E       
Sbjct: 876  D--KNNPKHELLHYAIERKITVLPLRPSNYNFKGHLKRFGQYYYSYGTYVVSEQR---NI 930

Query: 268  IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
            I +TE+P +V     IE I +   + R+  +E+I D S+ +   +L     +    ++ E
Sbjct: 931  ITITELPLRVPTVAYIESIKK--SSNRMAFIEEIIDYSSSETIEILVKLKPNSLNRIVEE 988

Query: 328  SIFMLSDMETRFPLNMNVLSMGR----VPQ-----VMPLDGILKEWLAHRREVLFRRSSF 378
                         L +            P+           IL  WL +RR+V  +R   
Sbjct: 989  FKETEEQDSIENFLRLRNCLHSHLNFVKPKGGIIEFNSYYEILYAWLPYRRDVYQKRLMR 1048

Query: 379  RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
                +  R+ +   ++       ++  +   ED+ +   +           +++     +
Sbjct: 1049 ERAVLKLRIIMETAIVRYINESADL-NLSHYEDEKEASRILSEHGFPPLNQSLITSPEFA 1107

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
              +    +        +   +  + L+ +  ++  +I   
Sbjct: 1108 SIEELNQKALQGCYTYILSLQARELLIAAKTRRVEKIKKM 1147


>gi|32453412|gb|AAP58318.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 54

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 38/54 (70%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE +
Sbjct: 1   GDSSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEEL 54


>gi|32453414|gb|AAP58319.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|32453418|gb|AAP58321.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 54

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 39/54 (72%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE +
Sbjct: 1   GDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEEL 54


>gi|262135|gb|AAB24598.1| type II DNA topoisomerase homolog [African swine fever virus ASFV,
            Malawi LIL20/1, Peptide, 1191 aa]
          Length = 1191

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 74/460 (16%), Positives = 162/460 (35%), Gaps = 34/460 (7%)

Query: 39   KERAIPDLRDGFKPVHRRIIHAMSEMGLD---FGAAFKKSARIVGEVIGK--LHPHGDQS 93
             ER IP+  DG     R+I+      GL         +K  +  G V      H HGD S
Sbjct: 702  IERQIPNFLDGMTRARRKILAG----GLKCFASNNRERKVFQFGGYVADHMFYH-HGDMS 756

Query: 94   VYDSLVRLAQPF---VQRYPLISGQGNFGNI--DGDSAAAYRYTEARM-TQVAELILQGV 147
            +  S+++ AQ +      YP+  G G+FG+    G  A + RY   ++ ++  + +    
Sbjct: 757  LNTSIIKAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQLASEFIKTMFPAE 816

Query: 148  DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            D   + +    + + +EP  +    P  +    +  + G   +  +  +++I     A +
Sbjct: 817  DSWLLPYVFE-DGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYV 875

Query: 208  DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            D  + + +  L +       T   +  S  +     +     +     + V E       
Sbjct: 876  D--KNNPKHELLHYAIERKITVLPLRPSNYNFKGHLKRFGQYYYSYGTYVVSEQR---NI 930

Query: 268  IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
            I +TE+P +V     IE I +   + R+  +E+I D S+ +   +L     +    ++ E
Sbjct: 931  ITITELPLRVPTVAYIESIKK--SSNRMAFIEEIIDYSSSETIEILVKLKPNSLNRIVEE 988

Query: 328  SIFMLSDMETRFPLNMNVLSMGR----VPQ-----VMPLDGILKEWLAHRREVLFRRSSF 378
                         L +            P+           IL  WL +RR+V  +R   
Sbjct: 989  FKETEEQDSIENFLRLRNCLHSHLNFVKPKGGIIEFNSYYEILYAWLPYRRDVYQKRLMR 1048

Query: 379  RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
                +  R+ +   ++       ++  +   ED+ +   +           +++     +
Sbjct: 1049 ERAVLKLRIIMETAIVRYINESADL-NLSHYEDEKEASRILSEHGFPPLNQSLITSPEFA 1107

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
              +    +        +   +  + L+ +  ++  +I   
Sbjct: 1108 SIEELNQKALQGCYTYILSLQARELLIAAKTRRVEKIKKM 1147


>gi|186659436|dbj|BAG30949.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 52

 Score =  104 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 42/52 (80%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
           ++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY S VR+AQPF  RY
Sbjct: 1   LYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGSSVRMAQPFSLRY 52


>gi|75763518|ref|ZP_00743229.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|74488989|gb|EAO52494.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
          Length = 67

 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
          +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1  MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72 FKKSAR 77
          F+KSA+
Sbjct: 61 FRKSAK 66


>gi|4768994|gb|AAD29710.1|AF140497_1 hypothetical protein [Oryza sativa]
          Length = 142

 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 49/118 (41%), Gaps = 5/118 (4%)

Query: 594 IDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + L+  + I +    +       L++++  G    V  +   A    G   ++++  +++
Sbjct: 3   LSLSDGERITSIVPVNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDEL 62

Query: 651 KLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           K V +   D  VA+  +N  +++ + +++  + R  +GV     K+G     +     
Sbjct: 63  KWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPA 120



 Score = 44.4 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 6/107 (5%)

Query: 640 TFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695
             L +S  E++  +V V       ++ ++  N  +    ++    + R  G+       G
Sbjct: 1   QLLSLSDGERITSIVPVNEFGEDQYLVMLTVNGYIKKVPLNAFSAI-RTSGIISIQLAPG 59

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   +  +      ++                 R   G L  K
Sbjct: 60  DELK-WVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMK 105


>gi|32453416|gb|AAP58320.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 53

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 37/53 (69%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           GD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE 
Sbjct: 1   GDSSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEE 53


>gi|4140432|gb|AAD04051.1| DNA gyrase subunit A [Chlamydia trachomatis]
          Length = 55

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           NFG+IDGD AAA RYTEAR+T  A  +L+ +D+D VD    Y+E   EPVVFPSK
Sbjct: 1   NFGSIDGDPAAAMRYTEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSK 55


>gi|227496005|ref|ZP_03926316.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
 gi|226834493|gb|EEH66876.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
          Length = 310

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 83/262 (31%), Gaps = 25/262 (9%)

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             +P  V++S  G +  +            +  D+L   +      R+ +++  G+   +
Sbjct: 9   PDDPCRVLLSATGLVARVAGAEAVPRTGERQRHDALTSQVPTTARSRVGVVTDTGRLVVM 68

Query: 576 PAGNLLSGRGHG--------EAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFI 625
              +                + + LL+DL   + +V         +  +++ ++ G    
Sbjct: 69  EVLSTPEVPRLEGAPSLAGGQPVGLLVDLEPGETVVGLVPVGEAQREPVVLATAGGVIKR 128

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMSRG 684
           V+  +  A   +    + ++  +++          V  +V ++ +LL F   ++    RG
Sbjct: 129 VKPGDEPA-RGESWEVISLADGDRVVFAGIAADTDVLTLVTDDAQLLRFEASKVRPQGRG 187

Query: 685 -KGVRLQSYKDGG------------ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
             G+   S  +G             +++ +   I +    +        +          
Sbjct: 188 AAGMAGISLHEGARVIAGASVPAELLAEAVVVTIADAEGALPGMDSGSVKVTPLDRYPAK 247

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            R   G    +      + + +
Sbjct: 248 GRATGGVRAQRFLRGEDQLVVA 269


>gi|213162316|ref|ZP_03348026.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 134

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 74/134 (55%), Positives = 93/134 (69%), Gaps = 2/134 (1%)

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           + NG+SGIAVGMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT   I+  
Sbjct: 1   MVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAA-IING 59

Query: 236 RESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
           R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR
Sbjct: 60  RRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKR 119

Query: 295 IPLLEDIRDESAED 308
           +  +  +RDES +D
Sbjct: 120 VEGISALRDESDKD 133


>gi|186659434|dbj|BAG30948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 54

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
           ++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY S VR+AQPF  R 
Sbjct: 1   LYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGSSVRMAQPFSLRL 52


>gi|229025029|ref|ZP_04181458.1| Topoisomerase IV subunit A [Bacillus cereus AH1272]
 gi|228736364|gb|EEL86930.1| Topoisomerase IV subunit A [Bacillus cereus AH1272]
          Length = 193

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 3/129 (2%)

Query: 622 NAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679
                E ++       +    + +  E+++  +    G   + +       LIF  D++ 
Sbjct: 1   MIKKTELNQYKVQRYSRAFVAVNLKKEDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 60

Query: 680 EMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            +  R  GV+  + K+            E    I    R   +           R   G 
Sbjct: 61  PVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGL 120

Query: 739 LVPKGFPRS 747
           ++ K   R+
Sbjct: 121 VIFKELKRN 129


>gi|228478508|gb|ACQ41840.1| gyrase subunit A [Burkholderia multivorans]
 gi|228478512|gb|ACQ41842.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 35/42 (83%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           SARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQG
Sbjct: 3   SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLIDGQG 44


>gi|155676194|gb|ABU25360.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 52

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 42/53 (79%), Gaps = 2/53 (3%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYDS VR+AQPF    PL
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSSVRMAQPFSL--PL 51


>gi|321472296|gb|EFX83266.1| hypothetical protein DAPPUDRAFT_315718 [Daphnia pulex]
          Length = 711

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 113/360 (31%), Gaps = 60/360 (16%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV--YD------ 96
            + DG     R+II    +            A++ G V  +       S+  YD      
Sbjct: 261 SIMDGLTVGQRKIIFTCIK---RTDKEEVTVAQLAGLVAAR------TSLCNYDEENLTR 311

Query: 97  SLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +++ LA  F       L+   G+FG     G+ AA+ R     M+Q+  +I    D    
Sbjct: 312 TIIGLAHDFVGTNNINLLQPIGHFGTRLQGGEDAASPRQISTLMSQLTRIIFHPHD---- 367

Query: 153 DFRDTY--NE-EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D+   +  +     EP  +    P +L NG  GI     TS   +N ++I E  + +++ 
Sbjct: 368 DWLLKHRTDGKRLIEPEFYAPIIPMILVNGIGGIGTDWTTSRLIYNPRDIIENIMRMLNG 427

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
            E                     ++  +      R+    + +            +  +V
Sbjct: 428 EEPIYM--------------NPWIKGYQG--SIQRVDDNTYVISGEVS----KLSATQVV 467

Query: 270 VTEIPYQVQKSRLIEKIAE---LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
           +TE+P  +      E + E       K  PL+   ++   +     +             
Sbjct: 468 ITELPLGISVRNYRESVMENLLHGSEKIPPLITGYKEYHTDTTVRFVVNMTEEKMQQAES 527

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           +    L  ++          +    P ++       +      ++L      R+   + R
Sbjct: 528 QGFHDLFRLQ---------CTHTVTPTLLYDPNGFLKNYDSNNDILKTYFDVRLNLFEER 578


>gi|170783860|gb|ACB37404.1| DNA gyrase subunit A [Spiroplasma eriocheiris]
 gi|170783863|gb|ACB37406.1| DNA gyrase subunit A [Spiroplasma sp. CRAYFISH]
 gi|170783866|gb|ACB37408.1| DNA gyrase subunit A [Spiroplasma sp. SHRIMP]
          Length = 68

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 6  ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
          +SN      E V    L   +E+R+  YA   I+ERA+PD+RDG KPV RRI+ AM+E+ 
Sbjct: 1  MSNQKQTDNELVYT--LNDIMEDRFARYAKYIIQERALPDVRDGLKPVQRRILFAMNELR 58

Query: 66 LDFGAAFKKS 75
          L F +++KKS
Sbjct: 59 LTFNSSYKKS 68


>gi|228478506|gb|ACQ41839.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 35/42 (83%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           SARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQG
Sbjct: 3   SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQG 44


>gi|229086163|ref|ZP_04218382.1| Topoisomerase IV subunit A [Bacillus cereus Rock3-44]
 gi|228697147|gb|EEL49913.1| Topoisomerase IV subunit A [Bacillus cereus Rock3-44]
          Length = 193

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 39/129 (30%), Gaps = 3/129 (2%)

Query: 622 NAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679
                E ++       +    + +  ++++  +    G   + +       LIF  +++ 
Sbjct: 1   MIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFVTDGTSDIVLATHGAYALIFGEEEVS 60

Query: 680 EMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            +  R  GV+  + K+            E    I    R   +           R   G 
Sbjct: 61  PVGIRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGL 120

Query: 739 LVPKGFPRS 747
           ++ K   R+
Sbjct: 121 VIFKELKRN 129


>gi|254168976|ref|ZP_04875815.1| DNA gyrase C-terminal domain, beta-propeller [Aciduliprofundum
           boonei T469]
 gi|197622082|gb|EDY34658.1| DNA gyrase C-terminal domain, beta-propeller [Aciduliprofundum
           boonei T469]
          Length = 153

 Score =  101 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           G+ + +  +  K + FS D +  M R  +GV     +DG    +      EG        
Sbjct: 7   GEDIFLFTKYGKAIRFSEDDVRVMGRTARGVIGIKLQDGDEV-ISSAVESEGPYVFAVLS 65

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             Y +          +RGG+G        R+   +
Sbjct: 66  SGYGKRTPIGEYRRIRRGGMGVRNISI--RNATVV 98



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
               H  + I L +  GKA      ++         +   I L    +++++ V      
Sbjct: 1   MKITHGGEDIFLFTKYGKAIRFSEDDVRVMGRTARGVIG-IKLQDGDEVISSAVESEGPY 59

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
           +  V S G        E     R G     + + +   +K ++    D   ++ +N   +
Sbjct: 60  VFAVLSSGYGKRTPIGEYRRIRRGGMGVRNISIRNATVVKSLLTTENDEALLLTKNGMSI 119

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
              +  +  M R  +GV+L    DG    
Sbjct: 120 RIKLRDVSVMGRNARGVKLIKLDDGDEVV 148



 Score = 42.5 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +  + + G     P G     R  G  ++ +     N  +V + +     + L+++  
Sbjct: 58  PYVFAVLSSGYGKRTPIGEYRRIRRGGMGVRNISI--RNATVVKSLLTTENDEALLLTKN 115

Query: 621 GNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLVVKV 656
           G +  ++  ++       +G   +K+   +++    K+
Sbjct: 116 GMSIRIKLRDVSVMGRNARGVKLIKLDDGDEVVNAAKL 153


>gi|215480315|gb|ACJ67502.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 233

 Score =  101 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 131/231 (56%), Gaps = 9/231 (3%)

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
            P QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  
Sbjct: 1   FPSQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQ 60

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           + ++T F +N+  L     P+V+ L   L+ +L H++ V+ RR+++ ++  + R  IL+G
Sbjct: 61  TALQTSFGINLLALVD-GQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEG 119

Query: 393 LLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
           L +A  ++D +I++IRN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ 
Sbjct: 120 LRVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEE 179

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           E  +L+    ++  +L +  +    I  E+ E+KE F+       RRT   
Sbjct: 180 EYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE-----RRTEIV 225


>gi|226327146|ref|ZP_03802664.1| hypothetical protein PROPEN_01011 [Proteus penneri ATCC 35198]
 gi|225204364|gb|EEG86718.1| hypothetical protein PROPEN_01011 [Proteus penneri ATCC 35198]
          Length = 91

 Score =  101 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 39/64 (60%)

Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
          + L  + V+   L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2  SELTHDGVERQPLHLFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNT 61

Query: 70 AAFK 73
          A FK
Sbjct: 62 AKFK 65


>gi|4996107|dbj|BAA78332.1| parC [Staphylococcus epidermidis]
          Length = 52

 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
             +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN
Sbjct: 1   NTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGN 52


>gi|228478516|gb|ACQ41844.1| gyrase subunit A [Burkholderia multivorans]
          Length = 43

 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 35/42 (83%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           SARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQG
Sbjct: 2   SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQG 43


>gi|315273180|ref|ZP_07869219.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
 gi|313616193|gb|EFR89279.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
          Length = 171

 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           F  + I  M R   GVR    ++     +    + +    +    + Y +        L 
Sbjct: 2   FPEENIRVMGRTAAGVRGIRLREDDEV-IGMEVLEDDEKVLVVTEKGYGKQTPASQYPLR 60

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
            RGG+G        ++G  ++
Sbjct: 61  NRGGMGVKTVTITEKNGNLVA 81



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           I L  + +++   V +   K+LVV+ KG       S+     R G   KT         +
Sbjct: 20  IRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNL 79

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  VTG + + ++  +  L+ F I+ + +  R   GV+L    +      + 
Sbjct: 80  VAMKTVTGEEDLMLMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDEDEKVATVA 133


>gi|402872|gb|AAA21849.1| DNA gyrase subunit A [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 195

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D + +  +N + + F I     M RG  GV+  +  +G    +    +  G   +    +
Sbjct: 1   DLLMIATKNGQAVTFPISCFRAMGRGTHGVKGITLAEGDEV-ISLLWLKAGNKILTITEK 59

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            Y +        + +RG  G        + G  +
Sbjct: 60  GYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAV 93



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 7/156 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D +++ + +G+A T P     +    G      I L    ++++     +  K+L ++ K
Sbjct: 1   DLLMIATKNGQAVTFPISCFRAMG-RGTHGVKGITLAEGDEVISLLWLKAGNKILTITEK 59

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD-HVAVVGENRKLLIFSID 676
           G     E        R  K    ++  +K+     V  V  D  + +  ++ +++     
Sbjct: 60  GYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLIITSKDGQVIRIKAA 119

Query: 677 QIPEMSR-GKGVRLQSYKDGGIS-DVICFKICEGLT 710
            I    R  +GV+  + +DG +  D       E + 
Sbjct: 120 DIRLTGRNAQGVKAITLRDGDVVKDATALPSVEDIE 155


>gi|228478514|gb|ACQ41843.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 34/42 (80%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           SARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQG
Sbjct: 3   SARIVGDVIGKYHPHGDTAVYGTIVRMAQDFSLRYMLIDGQG 44


>gi|269967071|ref|ZP_06181139.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
 gi|269828330|gb|EEZ82596.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
          Length = 205

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 2/77 (2%)

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R   GVR     +      +     EG   +      Y +           RG  
Sbjct: 34  VRPMGRTASGVRGMKLAENDQVVSLIVPSHEGD-ILTVTENGYGKRTALSEYPTKGRGTQ 92

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  K   R+G  + +
Sbjct: 93  GVVSIKVSERNGPVVGA 109



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEK 649
           + L  N  +V+  V      +L V+  G       SE     R   G   +KVS      
Sbjct: 47  MKLAENDQVVSLIVPSHEGDILTVTENGYGKRTALSEYPTKGRGTQGVVSIKVSERNGPV 106

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
           +  +  V GD + ++ +   L+   + ++ ++ R  +GV L    +   +  +   +  +
Sbjct: 107 VGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVGRNTQGVTLIRTAEDESVVGLQRIEEVD 166

Query: 708 GLTW 711
               
Sbjct: 167 DEEL 170



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 2/114 (1%)

Query: 634 NTRKGKTFLKVSSEEKMKL-VVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS 691
            T  G   +K++  +++   +V      +  V EN      ++ + P   RG +GV    
Sbjct: 39  RTASGVRGMKLAENDQVVSLIVPSHEGDILTVTENGYGKRTALSEYPTKGRGTQGVVSIK 98

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
             +     V   ++ EG   +                    R   G  + +   
Sbjct: 99  VSERNGPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVGRNTQGVTLIRTAE 152


>gi|3282089|emb|CAA07512.1| topoisomerase II subunit A [Thermotoga neapolitana]
          Length = 139

 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           ++ F +  +  M R   GV+    + G     +     E    +    + + +     L 
Sbjct: 1   IIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSMDVVPSEEGEILTVTEKGFGKRTPVQLY 60

Query: 729 WLGKRGGVGSLVPKGFPRSGKFLS 752
            + KRGG G        ++G  ++
Sbjct: 61  RVQKRGGTGLRNISDVNKTGHVVA 84



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 589 AIQLLIDLNHNQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           A    I L    ++V+   V     ++L V+ KG              R G     +S  
Sbjct: 17  AGVQAIKLQPGDEVVSMDVVPSEEGEILTVTEKGFGKRTPVQLYRVQKRGGTGLRNISDV 76

Query: 648 EK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            K   +  V  V GD  + VV  N  ++   + +I  + R  KGV+L    D  IS V  
Sbjct: 77  NKTGHVVAVRYVKGDEEIVVVTRNGMMIRMPVSEIGVIGRVTKGVKLIELGDDTISKVAV 136

Query: 703 FKI 705
            K 
Sbjct: 137 VKD 139



 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++  G     P       +  G  ++ + D+N    +V         +++VV+  G   
Sbjct: 45  TVTEKGFGKRTPVQLYRVQKRGGTGLRNISDVNKTGHVVAVRYVKGDEEIVVVTRNGMMI 104

Query: 625 IVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTG 658
            +  SEI    R  KG   +++  ++ +  V  V  
Sbjct: 105 RMPVSEIGVIGRVTKGVKLIEL-GDDTISKVAVVKD 139


>gi|224539990|ref|ZP_03680529.1| hypothetical protein BACCELL_04902 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518395|gb|EEF87500.1| hypothetical protein BACCELL_04902 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 53

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 35/50 (70%)

Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
          L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M
Sbjct: 2  LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGM 51


>gi|1805621|dbj|BAA11412.1| GryA [Staphylococcus haemolyticus]
          Length = 40

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 34/40 (85%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           ARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQ
Sbjct: 1   ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQ 40


>gi|156311443|ref|XP_001617785.1| hypothetical protein NEMVEDRAFT_v1g69871 [Nematostella vectensis]
 gi|156195794|gb|EDO25685.1| predicted protein [Nematostella vectensis]
          Length = 87

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 11/87 (12%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               +++ + KG     +  +     + G   + +   +++       GD ++ +  ++ 
Sbjct: 1   EGKFVVLCTKKGIVKKTKLEDFSRPRQTGVNAITIQEGDELLEAKLTDGDNYIMMAVKSG 60

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKD 694
           + + F   ++    RG  GV      D
Sbjct: 61  RAICFEESKVRPTGRGAIGVNGIELSD 87



 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/83 (10%), Positives = 22/83 (26%), Gaps = 4/83 (4%)

Query: 657 TGDHVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            G  V +  +   +    ++       R  GV   + ++G           +    + + 
Sbjct: 1   EGKFVVLCTKKGIVKKTKLEDFSRP--RQTGVNAITIQEGDELLEAKLTDGDN-YIMMAV 57

Query: 716 GRSYNRSENDLLGWLGKRGGVGS 738
                    +       RG +G 
Sbjct: 58  KSGRAICFEESKVRPTGRGAIGV 80


>gi|207109271|ref|ZP_03243433.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 58

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 6  ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
          + +      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 1  MQDRLVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58


>gi|10444202|gb|AAG17772.1| topoisomerase IV subunit C [Methylobacterium extorquens AM1]
 gi|10444204|gb|AAG17773.1| topoisomerase IV subunit C [Methylophilus methylotrophus]
 gi|10444206|gb|AAG17774.1| topoisomerase IV subunit C [Methylobacillus sp. SK1]
 gi|10444208|gb|AAG17775.1| topoisomerase IV subunit C [Methylovorus sp. SS1]
          Length = 40

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 32/40 (80%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQ
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQ 40


>gi|70939063|ref|XP_740124.1| DNA GyrAse a-subunit [Plasmodium chabaudi chabaudi]
 gi|56517618|emb|CAH87702.1| DNA GyrAse a-subunit, putative [Plasmodium chabaudi chabaudi]
          Length = 516

 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 75/491 (15%), Positives = 185/491 (37%), Gaps = 51/491 (10%)

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IPSHN+ ++  A+++ + N +I+ ++L   I GPDF TGGII+  ++++   Y  G+G
Sbjct: 3   TNIPSHNLVDVINASISFLLNDKITNDELFNIIKGPDFSTGGIIITKKDTLRNIYNTGKG 62

Query: 249 GFRVRA-------------RWCVEE---------VGRGSWCIVVTEIPYQVQKSRLIEKI 286
              +R+                + E           +    +++  +P  V+ + LIE I
Sbjct: 63  SIIIRSNVFYEYVHNNKTYTHHINELGNLENLESDNKSCKKLIIKNLPPNVKPNELIENI 122

Query: 287 AELIIAKRIPL---LEDIRDESAEDVRIVLFPKNRSLDPDL---LMESIFMLSDMETRFP 340
             ++  K+      L  IRDES ++   ++    +    +     +  +F  + ME  + 
Sbjct: 123 VTVLNEKKNEHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLFKYTPMEINYH 182

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            N   +          L   L+ W  +R + + +    +   + + + I+   L     I
Sbjct: 183 CNFVCIGYENSYTQFSLKSFLQLWCENRIKFIKKNYQIKNNNLQKDLNIIDLYLTIQKKI 242

Query: 401 DEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            +II+ I         +  + S F L ++Q+  IL+++++ L  ++      +  N++ +
Sbjct: 243 LDIISFIHKNQNIEQIQNYLKSNFKLNDDQIKYILSMKIQKLVNIKNIDFDIQKKNIIKK 302

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +    ++++ ++    I  E+ ++K  +S    L        +   A            
Sbjct: 303 IQSNQYIIDNVQEIKQIIIDELIQIKNKYSLKKSLLP--QPQLKYKYAYINGPPNLFHPS 360

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           +      +    ++ +   +            +          +                
Sbjct: 361 QKYDEGDTKGDAVKFVTEQAEGKDEQPDDAPSAKDGNALERGKN--------------DV 406

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            N +      +  +      +   + T F  +Y++   L++++  G    ++ ++ + N 
Sbjct: 407 KNDVQNDVQNDVQRDNYRNTYIDSLDTTFKDIYNNDDVLILITYGGYIKKIKINDKLKNN 466

Query: 636 RKGKTFLKVSS 646
                 +K+S+
Sbjct: 467 VN--NIMKLSN 475


>gi|170783857|gb|ACB37402.1| DNA gyrase subunit A [Spiroplasma mirum]
          Length = 68

 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 6  ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
          +SN      E V    L   +++R+  YA   I+ERA+PD+RDG KPV RRI+ AM+E+ 
Sbjct: 1  MSNQKQTDNELVYT--LNDIMDDRFARYAKYIIQERALPDVRDGLKPVQRRILFAMNELR 58

Query: 66 LDFGAAFKK 74
          L F +++KK
Sbjct: 59 LTFNSSYKK 67


>gi|228478510|gb|ACQ41841.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 34/42 (80%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           SARIVG+VIGK HPHGD +VYD +VR+AQ F  RY LI GQG
Sbjct: 3   SARIVGDVIGKYHPHGDAAVYDRIVRMAQDFSLRYMLIDGQG 44


>gi|313611846|gb|EFR86317.1| DNA gyrase subunit A [Listeria monocytogenes FSL F2-208]
          Length = 169

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
             + I  M R   GVR    ++     +    + +    +    + Y +        L  
Sbjct: 1   PEENIRVMGRTAAGVRGIRLREDDEV-IGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRN 59

Query: 733 RGGVGSLVPKGFPRSGKFLS 752
           RGG+G        ++G  ++
Sbjct: 60  RGGMGVKTVTITEKNGNLVA 79



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           I L  + +++   V +   K+LVV+ KG       S+     R G   KT         +
Sbjct: 18  IRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNL 77

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  VTG + + ++  +  L+ F I+ + +  R   GV+L    +      + 
Sbjct: 78  VAMKTVTGEEDLMLMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDEDEKVATVA 131


>gi|116489836|gb|ABJ98821.1| GyrA [Enterobacter cloacae]
          Length = 40

 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 34/40 (85%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQ
Sbjct: 1   ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQ 40


>gi|145308241|gb|ABP57384.1| ParC [Brucella abortus]
          Length = 260

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 140/259 (54%), Positives = 192/259 (74%)

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           NMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+D
Sbjct: 2   NMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLD 61

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  +
Sbjct: 62  EVIRIIREEDEPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDL 121

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T
Sbjct: 122 EGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVT 181

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           +V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L 
Sbjct: 182 IVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLP 241

Query: 582 SGRGHGEAIQLLIDLNHNQ 600
            GRGHGE I++L+D+ ++Q
Sbjct: 242 GGRGHGEPIRILVDMENDQ 260


>gi|260941163|ref|XP_002614748.1| hypothetical protein CLUG_05526 [Clavispora lusitaniae ATCC 42720]
 gi|238851934|gb|EEQ41398.1| hypothetical protein CLUG_05526 [Clavispora lusitaniae ATCC 42720]
          Length = 134

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 11/123 (8%)

Query: 106 VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NE 160
                L+   G FG     G   +A RY   ++ ++   +   +D    D    Y   +E
Sbjct: 5   SNNLNLLKPNGGFGTRAAGGKDFSAPRYIFTQLNEITRKVFNPLD----DPLYNYLQDDE 60

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
              EP  +    P LL NG  GI  G +T+IPS N  +I      L++  +  +E++  +
Sbjct: 61  STVEPEWYLPVIPMLLVNGAEGIGTGWSTNIPSFNPADIVANIRRLMEGGD--LEEMYPW 118

Query: 221 IIG 223
             G
Sbjct: 119 FRG 121


>gi|28193555|emb|CAD56010.1| DNA gyrase [Providencia stuartii]
          Length = 40

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 34/40 (85%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           ARIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQ
Sbjct: 1   ARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQ 40


>gi|1041429|emb|CAA60602.1| DNA gyrase [Mycobacterium aurum]
 gi|1041440|emb|CAA60606.1| DNA gyrase [Mycobacterium fortuitum]
 gi|1041616|emb|CAA60609.1| DNA gyrase [Mycobacterium peregrinum]
 gi|326535743|gb|ADZ76538.1| DNA gyrase A [Mycobacterium agri]
 gi|326535745|gb|ADZ76539.1| DNA gyrase A [Mycobacterium aichiense]
 gi|326535747|gb|ADZ76540.1| DNA gyrase A [Mycobacterium aurum]
 gi|326535751|gb|ADZ76542.1| DNA gyrase A [Mycobacterium chitae]
 gi|326535753|gb|ADZ76543.1| DNA gyrase A [Mycobacterium chubuense]
 gi|326535755|gb|ADZ76544.1| DNA gyrase A [Mycobacterium flavescens]
 gi|326535757|gb|ADZ76545.1| DNA gyrase A [Mycobacterium gadium]
 gi|326535759|gb|ADZ76546.1| DNA gyrase A [Mycobacterium neoaurum]
 gi|326535761|gb|ADZ76547.1| DNA gyrase A [Mycobacterium parafortuitum]
 gi|326535767|gb|ADZ76550.1| DNA gyrase A [Mycobacterium rhodesiae]
 gi|326535771|gb|ADZ76552.1| DNA gyrase A [Mycobacterium vaccae]
 gi|326535813|gb|ADZ76573.1| DNA gyrase A [Mycobacterium chelonae]
 gi|326535815|gb|ADZ76574.1| DNA gyrase A [Mycobacterium fortuitum]
          Length = 40

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQ
Sbjct: 1   ARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQ 40


>gi|1041427|emb|CAA60601.1| DNA gyrase [Mycobacterium abscessus]
 gi|1041431|emb|CAA60603.1| DNA gyrase [Mycobacterium avium]
 gi|1041434|emb|CAA60604.1| DNA gyrase [Mycobacterium bovis]
 gi|1041436|emb|CAA60605.1| DNA gyrase [Mycobacterium chelonae]
 gi|1041442|emb|CAA60607.1| DNA gyrase [Mycobacterium kansasii]
 gi|1041444|emb|CAA60608.1| DNA gyrase [Mycobacterium leprae]
 gi|2815371|emb|CAA76163.1| DNA gyrase [Mycobacterium fortuitum]
 gi|2815373|emb|CAA76162.1| DNA gyrase [Mycobacterium gastri]
 gi|2815375|emb|CAA76159.1| DNA gyrase [Mycobacterium intracellulare]
 gi|2815377|emb|CAA76161.1| DNA gyrase [Mycobacterium marinum]
 gi|2815379|emb|CAA76160.1| DNA gyrase [Mycobacterium ulcerans]
 gi|31559441|emb|CAD92759.1| DNA gyrase subunit A [Mycobacterium africanum]
 gi|31559443|emb|CAD92760.1| DNA gyrase subunit A [Mycobacterium smegmatis]
 gi|31559445|emb|CAD92761.1| DNA gyrase subunit A [Mycobacterium gordonae]
 gi|31559447|emb|CAD92762.1| DNA gyrase subunit A [Mycobacterium intracellulare]
 gi|31559449|emb|CAD92763.1| DNA gyrase subunit A [Mycobacterium leprae]
 gi|31559453|emb|CAD92765.1| DNA gyrase subunit A [Mycobacterium malmoense]
 gi|31559455|emb|CAD92766.1| DNA gyrase subunit A [Mycobacterium simiae]
 gi|31559497|emb|CAD92767.1| DNA gyrase subunit A [Mycobacterium szulgai]
 gi|31559499|emb|CAD92768.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Rv]
 gi|31559501|emb|CAD92769.1| DNA gyrase subunit A [Mycobacterium ulcerans]
 gi|294478221|gb|ADE87458.1| DNA gyrase A [Mycobacterium massiliense]
 gi|313759698|gb|ADR79161.1| DNA gyrase A [Mycobacterium bolletii]
 gi|326535749|gb|ADZ76541.1| DNA gyrase A [Mycobacterium [chelonae] ATCC 14472]
 gi|326535763|gb|ADZ76548.1| DNA gyrase A [Mycobacterium phlei]
 gi|326535765|gb|ADZ76549.1| DNA gyrase A [Mycobacterium porcinum]
 gi|326535769|gb|ADZ76551.1| DNA gyrase A [Mycobacterium smegmatis]
 gi|326535811|gb|ADZ76572.1| DNA gyrase A [Mycobacterium abscessus ATCC 19977]
 gi|326535817|gb|ADZ76575.1| DNA gyrase A [Mycobacterium massiliense]
 gi|328670897|gb|AEB26324.1| DNA gyrase A [Mycobacterium massiliense]
          Length = 40

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQ 40


>gi|110340818|gb|ABG67976.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824]
          Length = 40

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 32/40 (80%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           ARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQ
Sbjct: 1   ARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQ 40


>gi|31559503|emb|CAD92770.1| DNA gyrase subunit A [Mycobacterium xenopi]
          Length = 40

 Score = 94.5 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSMRYPLVDGQ 40


>gi|242095824|ref|XP_002438402.1| hypothetical protein SORBIDRAFT_10g016438 [Sorghum bicolor]
 gi|241916625|gb|EER89769.1| hypothetical protein SORBIDRAFT_10g016438 [Sorghum bicolor]
          Length = 396

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 74  KSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
           K A+    V      H HG +++ +++VR+AQ F       L+   G FG     G  AA
Sbjct: 299 KVAQFAAFVAECSAYH-HGKENLSNTIVRMAQDFVGSNNINLLRPNGQFGTRLEGGKDAA 357

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           + RY    ++ +   I    D+  +D+  + + +  EP  
Sbjct: 358 SARYIFTELSSITRRIFNESDDILLDY-LSEDGQSIEPSW 396


>gi|326535809|gb|ADZ76571.1| DNA gyrase A [Mycobacterium tuberculosis H37Rv]
          Length = 40

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR V E +G  HPHGD S+YDSLVR+AQP+  RYPL+ GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQ 40


>gi|406489|gb|AAD12504.1| DNA gyrase B [Mycoplasma genitalium]
          Length = 77

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 33/53 (62%)

Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            L    VK++SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++   
Sbjct: 13 ENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAY 65


>gi|213025984|ref|ZP_03340431.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
          Typhi str. 404ty]
          Length = 39

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 31/39 (79%)

Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
          +  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1  KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 39


>gi|254507465|ref|ZP_05119599.1| DNA topoisomerase 4 subunit A [Vibrio parahaemolyticus 16]
 gi|219549535|gb|EED26526.1| DNA topoisomerase 4 subunit A [Vibrio parahaemolyticus 16]
          Length = 123

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKIC 706
            +  +  D +  +    ++L+F I  +P++++GKG ++ +      K+          + 
Sbjct: 5   AIADLDSDEIVAITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEILSHLIAVP 64

Query: 707 EGLTW-IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            G T  + +  R      +DL  + G+RG  GSL+P+G  R  + 
Sbjct: 65  RGATLTLYAGKRKLGLKPSDLDNFRGERGRRGSLLPRGLQRVTRI 109


>gi|31559451|emb|CAD92764.1| DNA gyrase subunit A [Mycobacterium fortuitum]
          Length = 40

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR V E +G  HPHGD S+YD LVR+AQP+  RYPL+ GQ
Sbjct: 1   ARSVAETMGNYHPHGDSSIYDPLVRMAQPWSLRYPLVDGQ 40


>gi|325271255|ref|ZP_08137799.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
 gi|324103615|gb|EGC00918.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
          Length = 115

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLT 710
             D +A V    +LL+F +  +P++ +GKG ++       ++        +         
Sbjct: 10  EQDWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAVIADGATL 69

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            + +  R+ +   +DL  + G+RG  GS +P+GF R    
Sbjct: 70  VLQAGKRTLSLKPDDLEHYKGERGRRGSKLPRGFQRVDSL 109


>gi|296391804|ref|ZP_06881279.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAb1]
          Length = 108

 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLT 710
             D +A V    +LL+F +  +P++ +GKG ++       ++        +         
Sbjct: 1   EQDWLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATL 60

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            + +  R+ +   +DL  + G+RG  G+ +P+GF R    
Sbjct: 61  VLQAGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSL 100


>gi|3660560|dbj|BAA33440.1| This sequence corresponds to the amino acid positions 54 to 104 of
           E.coli parC gene [Enterococcus faecium]
          Length = 49

 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +   F+KSA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   G
Sbjct: 1   YDKGFRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHG 49


>gi|49425337|gb|AAT66029.1| DNA topoisomerase IV subunit A [Corynebacterium amycolatum]
          Length = 47

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           GD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++
Sbjct: 1   GDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDND-PAAMRYTEAKLS 47


>gi|218677864|ref|ZP_03525761.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 241

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 48/172 (27%), Gaps = 60/172 (34%)

Query: 641 FLKVSS-EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGG 696
            +K+    +++  V   T  D V +     + + FS+D +     R   GVR  +  +G 
Sbjct: 1   AMKLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGD 60

Query: 697 ISDVICFK---------------------------------ICEGLT------------- 710
               +                                    + E +T             
Sbjct: 61  RIISMTIVGHVDAEPWERAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEVL 120

Query: 711 ------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLSS 753
                  +  + + + +  +     +  RGG G        ++   G+ +++
Sbjct: 121 RNREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTS-KTGEIGELVAA 171



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        +   + R GK        K     ++     V  GD + +V
Sbjct: 124 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 183

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSY-KDGGISDV 700
            +  +L+   +  I   SR  KGV + S  KD  +  V
Sbjct: 184 SDGGQLIRVPVGGIRIASRATKGVTIFSTHKDEKVVSV 221



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 49/216 (22%), Gaps = 61/216 (28%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE---IIANTRKGKTFLKVSSEEKMKLV 653
               +I++         +L+ ++ G        +          G   + +   +++  +
Sbjct: 6   EEGDEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISM 65

Query: 654 VKV--------------------------TGDHVAVV----GENRKL-------LIFSID 676
             V                            + +A+V     E  +L       L     
Sbjct: 66  TIVGHVDAEPWERAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEVLRNREQ 125

Query: 677 -----------------QIPEMSRG-KGVRLQSYKDGGISD--VICFKICEGLTWIDSAG 716
                                  RG KG+R       G     V  F + +G   +  + 
Sbjct: 126 FVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSD 185

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                        +  R   G        +  K +S
Sbjct: 186 GGQLIRVPVGGIRIASRATKGV-TIFSTHKDEKVVS 220


>gi|294637121|ref|ZP_06715432.1| DNA gyrase subunit A [Edwardsiella tarda ATCC 23685]
 gi|291089692|gb|EFE22253.1| DNA gyrase subunit A [Edwardsiella tarda ATCC 23685]
          Length = 159

 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 1/68 (1%)

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR     D      +     EG   +      Y +           R   G +  K   
Sbjct: 2   GVRGIKLADDDRVVSLIVPHGEGA-ILTVTQNGYGKRSAVAEYPTKSRATQGVISIKVTE 60

Query: 746 RSGKFLSS 753
           R+G+ + +
Sbjct: 61  RNGRVVGA 68



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 9/136 (6%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS 646
                I L  +  +V+  V      +L V+  G       +E    +R   G   +KV+ 
Sbjct: 1   PGVRGIKLADDDRVVSLIVPHGEGAILTVTQNGYGKRSAVAEYPTKSRATQGVISIKVTE 60

Query: 647 -EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD---- 699
              ++   V++  GD + ++ +   L+   + ++  + R  +GV L    +         
Sbjct: 61  RNGRVVGAVQIDDGDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDEHVVGLQR 120

Query: 700 VICFKICEGLTWIDSA 715
           V+     E L  ID +
Sbjct: 121 VVEPVDDEELDSIDGS 136



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 39/110 (35%), Gaps = 2/110 (1%)

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           G   +K++ ++++  ++   G+  +  V +N      ++ + P  SR  +GV      + 
Sbjct: 2   GVRGIKLADDDRVVSLIVPHGEGAILTVTQNGYGKRSAVAEYPTKSRATQGVISIKVTER 61

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
               V   +I +G   +                 +  R   G ++ +   
Sbjct: 62  NGRVVGAVQIDDGDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAE 111


>gi|321472241|gb|EFX83212.1| hypothetical protein DAPPUDRAFT_315938 [Daphnia pulex]
          Length = 206

 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 70/185 (37%), Gaps = 20/185 (10%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR----IVGEVIGKLHPHGDQSV 94
            ER+ P L DG K   R+++  +    L+        AR    +         P    S+
Sbjct: 3   YERSTPSLIDGLKLEQRKVLFTV----LNRNDKDVNVARLALSVAEHTALHYEP---GSL 55

Query: 95  YDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDED 150
              ++ +AQ F       L+   G FG     G  AA+       ++++  LI    D+ 
Sbjct: 56  MRPIMWMAQDFVGSNNVSLLIPNGQFGTRHQGGKDAASPPLISTSISKLTRLIFHPQDDP 115

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +  R   ++   EP  +    P +L NGTS I  GM+ +    ++ E  +  L   + P
Sbjct: 116 LLTHRMDGDQS-IEPEFYAPIIPLILVNGTSRI--GMSYN--PRDITENLKRMLDDDEEP 170

Query: 211 EISIE 215
                
Sbjct: 171 IPMDP 175


>gi|541460|pir||S41421 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Mycobacterium smegmatis (fragment)
 gi|629195|pir||S43042 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Mycobacterium avium (fragment)
 gi|452278|emb|CAA54443.1| DNA gyrase subunit A [Mycobacterium smegmatis]
          Length = 36

 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 27/36 (75%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 1   DASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|284097497|ref|ZP_06385584.1| DNA gyrase, subunit A [Candidatus Poribacteria sp. WGA-A3]
 gi|283830993|gb|EFC35016.1| DNA gyrase, subunit A [Candidatus Poribacteria sp. WGA-A3]
          Length = 154

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 91/154 (59%), Gaps = 2/154 (1%)

Query: 243 YRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
              GRG   VRA+  VE +  R    I+VTEIPYQV K++++EKIAEL+  KR+  + DI
Sbjct: 1   MNTGRGLLTVRAKTHVETDEKRDRASIIVTEIPYQVNKAKVLEKIAELVQEKRLEGISDI 60

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    +   P +++  ++  + ++  F + M  L   R P+++ L  IL
Sbjct: 61  RDESDRDGIRVVIELKKGELPPVILNQLYKHTQLQNTFGVIMLALVHNR-PEILTLKQIL 119

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
             +L HRREV+ RR+++ ++  + R  I++GL I
Sbjct: 120 VAFLEHRREVVIRRTAYELRKAEERAHIVEGLNI 153


>gi|133853668|gb|ABO39038.1| GyrA [Brucella abortus]
          Length = 37

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           A +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI
Sbjct: 1   AGVVGEVMGKYHPHGDVSIYDALVRMAQDFSMRDPLI 37


>gi|32481438|gb|AAP84065.1| gyrase [Enterococcus casseliflavus]
          Length = 39

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 30/39 (76%)

Query: 58 IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
          ++ M+E+G+      KKSARIVG+V+GK HPHGD ++Y+
Sbjct: 1  LYGMNELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYE 39


>gi|47419976|gb|AAT27340.1| DNA gyrase A [Campylobacter jejuni]
          Length = 274

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 121/275 (44%), Gaps = 4/275 (1%)

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ RR+
Sbjct: 1   KREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRT 59

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILN 433
            F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +AIL+
Sbjct: 60  IFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANAILD 119

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F       
Sbjct: 120 MKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQ 179

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
                               +       +           K       A+   + D ++ 
Sbjct: 180 IEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIES 239

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
              A+T D ++ ++  G+ Y L    +  G    +
Sbjct: 240 FFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAK 274



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
            +   ++ ++ +G    V   +     R  KGK  +    ++ ++      T D +  V 
Sbjct: 194 PNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 253

Query: 666 ENRKLLIFSIDQIPEMSRGK 685
           +  +L    + +IPE SR  
Sbjct: 254 DRGQLYWLKVYKIPEGSRTA 273



 Score = 39.8 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 11/35 (31%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +    R Y +          KRGG G L    + 
Sbjct: 199 VVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYD 233


>gi|1617512|gb|AAC82506.1| topoisomerase subunit ParC [Neisseria gonorrhoeae]
          Length = 155

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 14/143 (9%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-------TGDHVA 662
                L+ SS G  FI +  +++   + GK  +   S E +   V V           + 
Sbjct: 4   PEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKII 63

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY--- 719
                 + L F I ++  M++GKG+++     G             +       R     
Sbjct: 64  AATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESMTHTAVSSEPEILIESEGRRGAAHK 123

Query: 720 -NRSENDLLGWLGKRGGVGSLVP 741
                  +     KRG  G L+P
Sbjct: 124 DRLPVALIE---AKRGKKGRLLP 143


>gi|530421|emb|CAA83739.1| DNA gyrase (alpha) [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 257

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 102/254 (40%), Gaps = 18/254 (7%)

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L   +  ++  E   L+ + +K   +LN      N+I   + EVK+ F       
Sbjct: 1   MRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNDNLVLDNEIISRLEEVKKQFG------ 54

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDS 550
            +R +  E    D    Q+ +I ++ I + IS  G+I+ + ++ ++ +       K  D 
Sbjct: 55  IKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDM 114

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
                     D ++L+S     Y++P         +  G  I  +     N+ I+ A V 
Sbjct: 115 WISQGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVI 174

Query: 609 DS----TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD--HV 661
                 T  LL+V+  G     + S++      K    +K+S ++ +     ++    + 
Sbjct: 175 KEFINSTQHLLLVTKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYC 234

Query: 662 AVVGENRKLLIFSI 675
            +V +N   + ++I
Sbjct: 235 CIVTKNGYAVRYNI 248


>gi|317498959|ref|ZP_07957242.1| hypothetical protein HMPREF0996_02226 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893792|gb|EFV15991.1| hypothetical protein HMPREF0996_02226 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 222

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 78/225 (34%), Gaps = 17/225 (7%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
             +  S                   K  +    TD+I + +  G  + +   ++ +G+  
Sbjct: 2   DRFGYSKTMDKATYQRNKENILKEYKFIVPCMNTDKICIFTNLGVMHQIKVLDIPAGKFR 61

Query: 587 GEAIQLLIDLNHN---QDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            + + +    N++   + I+     +S     LL  ++K    +++  E++   ++    
Sbjct: 62  DKGVPIDNLCNYDSTKEYIIQVLDAESMIHSSLLFATAKSMLKVMD-GELLNAAKRTVQA 120

Query: 642 LKVSSEEKMKLVVKVT-----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
            K+S  +++  V+ +       D V +  +    L F + +IP+  +   GVR       
Sbjct: 121 TKLSE-DELIEVIPIDWMEGSEDKVVLQTKEGVFLKFLLSEIPKKKKSALGVRGMKLSKD 179

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                I     + ++ I        +        L KR   G+ V
Sbjct: 180 DSLTNIYVMAAQNISSIVYKE----KELEFHRLKLSKRDSKGTKV 220


>gi|47419978|gb|AAT27341.1| DNA gyrase A [Campylobacter jejuni]
          Length = 269

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 118/262 (45%), Gaps = 4/262 (1%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ RR+ F +Q 
Sbjct: 6   EIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQK 64

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +AIL+++L  L
Sbjct: 65  ARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRL 124

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F             
Sbjct: 125 TGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYD 184

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
                         +       +           K       A+   + D ++    A+T
Sbjct: 185 DIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANT 244

Query: 560 TDRILLLSTDGKAYTLPAGNLL 581
            D ++ ++  G+ Y L    + 
Sbjct: 245 HDTLMFVTDRGQLYWLKVYKIP 266



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
            +   ++ ++ +G    V   +     R  KGK  +    ++ ++      T D +  V 
Sbjct: 193 PNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 252

Query: 666 ENRKLLIFSIDQIPE 680
           +  +L    + +IPE
Sbjct: 253 DRGQLYWLKVYKIPE 267



 Score = 39.8 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 11/35 (31%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +    R Y +          KRGG G L    + 
Sbjct: 198 VVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYD 232


>gi|133853611|gb|ABO39036.1| GyrA [Brucella melitensis biovar Abortus 2308]
          Length = 37

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           A +VGEV+GK HPHGD S+Y++LVR+AQ F  R PLI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYNALVRMAQDFSMRDPLI 37


>gi|452282|emb|CAA54444.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 36

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 27/36 (75%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 1   DVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|269219417|ref|ZP_06163271.1| putative DNA gyrase subunit A [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211152|gb|EEZ77492.1| putative DNA gyrase subunit A [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 241

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 35/144 (24%), Gaps = 17/144 (11%)

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           ++ + +G    V         +     + +   + +         D + +V  +  LL F
Sbjct: 58  VLATERGKIKRVGAGH---PGKDSWELIGLEKGDSVIGCGHCADADQIVLVSSDAHLLRF 114

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE---GLTWIDSAGR---------SYN 720
               +    R G+GV             +     +   G      +G             
Sbjct: 115 DGSSVRPQGRAGRGVAGIRLGAEAKVIALGVVPGDDVGGTLVATVSGSRDALEGTVAGNA 174

Query: 721 RSENDLLGWLGKRGGVGSLVPKGF 744
           +           RG  G    +  
Sbjct: 175 KVTPLDRFPAKGRGTGGVRAQRFL 198


>gi|939957|emb|CAA51386.1| gyrA [Mycobacterium tuberculosis H37Rv]
          Length = 36

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 27/36 (75%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YDSLVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 1   DASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|452280|emb|CAA54445.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 36

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 26/36 (72%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 1   DASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|218507099|ref|ZP_03504977.1| DNA gyrase subunit A [Rhizobium etli Brasil 5]
          Length = 97

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 1/98 (1%)

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +  +ALI++P I + +L++ I GPDFPTG  I+  R  I  +Y  G
Sbjct: 1   MATNIPPHNLSEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETG 59

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
           RG   +R    +E +      I++TEIPYQV K+ +IE
Sbjct: 60  RGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIE 97


>gi|133853638|gb|ABO39037.1| GyrA [Brucella melitensis biovar Abortus 2308]
          Length = 37

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           A +VGEV+GK HPHGD S+Y +LVR+AQ F  R PLI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYYALVRMAQDFSMRDPLI 37


>gi|452284|emb|CAA54446.1| DNA gyrase [Mycobacterium smegmatis str. MC2 155]
          Length = 36

 Score = 84.1 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 26/36 (72%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 1   DVSIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|116489838|gb|ABJ98822.1| topoisomerase IV subunit A [Enterobacter cloacae]
          Length = 34

 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/34 (61%), Positives = 28/34 (82%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF 
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFS 34


>gi|197111784|gb|ACH43047.1| ParC subunit A of topoisomerase IV [Enterococcus faecium]
          Length = 51

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 31/47 (65%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
            +   F KSA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI 
Sbjct: 1   SYDKGFGKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIE 47


>gi|325067252|ref|ZP_08125925.1| DNA topoisomerase IV subunit A [Actinomyces oris K20]
          Length = 183

 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 8/130 (6%)

Query: 594 IDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +D+   + +V            +++ +++G    V+  +      +    + +S  +++ 
Sbjct: 51  VDIEPEEKVVGLVPVGSADNPPIVLATAEGVIKRVKPGD-EPRNAESWEVISLSEGDRVV 109

Query: 652 LV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE-- 707
                   D +A+V  + +LL F   ++    RG  G+   S  +G           E  
Sbjct: 110 FAGTAADTDFLALVTSDAQLLRFQAAKVRPQGRGAGGMAGISLHEGARVIAGAAVPEELL 169

Query: 708 -GLTWIDSAG 716
                +  AG
Sbjct: 170 AEAVVVTVAG 179


>gi|133853699|gb|ABO39039.1| GyrA [Brucella abortus]
          Length = 37

 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           A +VGEV+GK HPHGD S+YD+LVR+A  F  R PLI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYDALVRMAXDFSMRDPLI 37


>gi|47419974|gb|AAT27339.1| DNA gyrase A [Campylobacter jejuni]
          Length = 264

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 118/265 (44%), Gaps = 4/265 (1%)

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+
Sbjct: 1   IRVVIELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRK 59

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
            V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E 
Sbjct: 60  TVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSEL 119

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F
Sbjct: 120 QANAILDMKLGRLTGLEREKIENELAELMKEITRLEEILKSETLLENLIRDELKEIRSKF 179

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                                      +       +           K       A+   
Sbjct: 180 DVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTY 239

Query: 547 EGDSLKIALHAHTTDRILLLSTDGK 571
           + D ++    A+T D ++ ++  G+
Sbjct: 240 DDDFIESFFTANTHDTLMFVTDRGQ 264



 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 11/35 (31%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +    R Y +          KRGG G L    + 
Sbjct: 206 VVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYD 240



 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
            +   ++ ++ +G    V   +     R  KGK  +    ++ ++      T D +  V 
Sbjct: 201 PNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 260

Query: 666 ENRK 669
           +  +
Sbjct: 261 DRGQ 264


>gi|166890|gb|AAA32877.1| topoisomerase II [Arabidopsis thaliana]
          Length = 88

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 92  QSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGV 147
           QS+  +++ +AQ +       L+   G FG     G  +A+ RY   +++ V  ++    
Sbjct: 1   QSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFPKD 60

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           D+  +D     + +  EP  +    P +L
Sbjct: 61  DDLLLD-YLNEDGQRIEPTWYMPIIPTVL 88


>gi|33322875|gb|AAQ07174.1|AF496482_1 DNA gyrase subunit A [Lactobacillus delbrueckii subsp. lactis]
          Length = 138

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 81/139 (58%), Gaps = 1/139 (0%)

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            NP+++ ++L++ I GPDFPTGGI+   R  ++ +Y  G+G   VRA+  +E    G   
Sbjct: 1   KNPDVTTKELMKAIPGPDFPTGGIL-MGRGGVLHAYESGKGNIVVRAKTEIETEKSGRER 59

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           I+V+EIPY V K+ L++KIAEL   K I  +  +RDES +    +     R     +++ 
Sbjct: 60  IIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQSGMRITIDVRRDASASVVLN 119

Query: 328 SIFMLSDMETRFPLNMNVL 346
           ++F  + M++ F +NM  +
Sbjct: 120 NLFKETQMQSNFAMNMVAI 138


>gi|47420006|gb|AAT27355.1| DNA gyrase A [Campylobacter fetus]
          Length = 267

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 4/267 (1%)

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES  D   ++    R    ++++ ++F  + ME  F + M  ++  + P+V  L 
Sbjct: 1   SEVRDESDRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAIN-NKEPKVFSLL 59

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---P 415
            +LK +L HR+ V+ RR+ F +Q    R  IL+GL IA  NID +I +I+          
Sbjct: 60  ELLKLFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARD 119

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++++F L+E Q +AIL++RL  L  LE  ++++EL  +L   EK+D++L S     N I
Sbjct: 120 GLMAKFGLSELQSNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENII 179

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E+ E+K  F                           +       +           K 
Sbjct: 180 RDELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKR 239

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDR 562
                 A+   + D ++      + D 
Sbjct: 240 GGKGKVAVTTYDDDFIESFFTCMSHDT 266



 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 12/41 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           I      +    R Y +          KRGG G +    + 
Sbjct: 211 IPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYD 251


>gi|30100900|gb|AAP21087.1| GyrA [Mycobacterium tuberculosis]
          Length = 36

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 26/36 (72%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+Y SLVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 1   DASIYHSLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|167946762|ref|ZP_02533836.1| DNA gyrase subunit A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 163

 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 95/155 (61%), Gaps = 2/155 (1%)

Query: 252 VRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E +       I+V E+PYQV K+RL+EKIAEL+  K+I  + ++RDES +D  
Sbjct: 1   MRARTEIESLDSSNRQRIIVHELPYQVNKARLLEKIAELVKEKKIEGITELRDESDKDGM 60

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ ++F  + M++ F +NM  L     P+++ L  +L+ ++ HRRE
Sbjct: 61  RMVIELRRGEVAEVVLNNLFQQTAMQSVFGINMVALVD-GQPRLLNLKQMLEYFIRHRRE 119

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           V+ RR+ F ++    R  +L+GL +A  NIDE+I 
Sbjct: 120 VVTRRTLFELRKARDRAHVLEGLAVALANIDEVIC 154


>gi|47419992|gb|AAT27348.1| DNA gyrase A [Campylobacter coli]
          Length = 255

 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 4/255 (1%)

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ 
Sbjct: 2   RVVIELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLIELLNLFLNHRKT 60

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQ 427
           V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F LTE Q
Sbjct: 61  VIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNATARDSLVAKFGLTELQ 120

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL+++L  L  LE  +I++EL  L+ E  ++D +L S     N I  E++E++  F 
Sbjct: 121 ANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIRSKFD 180

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                                     +       +           K       A+   +
Sbjct: 181 VPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYD 240

Query: 548 GDSLKIALHAHTTDR 562
            D ++    A+T D 
Sbjct: 241 DDFIESFFTANTHDT 255



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 11/35 (31%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +    R Y +          KRGG G L    + 
Sbjct: 206 VVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYD 240


>gi|47419980|gb|AAT27342.1| DNA gyrase A [Campylobacter jejuni]
          Length = 259

 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 116/259 (44%), Gaps = 4/259 (1%)

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ RR
Sbjct: 2   LKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRR 60

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q +AIL
Sbjct: 61  TIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANAIL 120

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F      
Sbjct: 121 DMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRIT 180

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                                +       +           K       A+   + D ++
Sbjct: 181 QIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIE 240

Query: 553 IALHAHTTDRILLLSTDGK 571
               A+T D ++ ++  G+
Sbjct: 241 SFFTANTHDTLMFVTDRGQ 259



 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 11/35 (31%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +    R Y +          KRGG G L    + 
Sbjct: 201 VVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYD 235



 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
            +   ++ ++ +G    V   +     R  KGK  +    ++ ++      T D +  V 
Sbjct: 196 PNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 255

Query: 666 ENRK 669
           +  +
Sbjct: 256 DRGQ 259


>gi|16923696|gb|AAL31544.1|AF435074_9 DNA gyrase A [Corynebacterium glutamicum]
          Length = 140

 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKV-TGDHVAVVGEN 667
             LLV +S G        +     R G   +         ++   + V   D +  +   
Sbjct: 1   EFLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTPKRGRLVSAIAVEEDDEIFAITSA 60

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
             ++   + QI   SR   GVRL + ++G     I   + +
Sbjct: 61  GGVVRTEVKQIRPSSRATMGVRLVNLEEGVELLAIDKNVED 101



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +    Y +           RGG+G +  K  P+ G+ +S+
Sbjct: 3   LLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTPKRGRLVSA 45



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 16/83 (19%), Gaps = 1/83 (1%)

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + V           ++      RG  GV    Y       V    + E            
Sbjct: 3   LLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTPKRGRLVSAIAVEEDDEIFAITSAGG 62

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
                        R  +G  +  
Sbjct: 63  VVRTEVKQIRPSSRATMGVRLVN 85


>gi|47419996|gb|AAT27350.1| DNA gyrase A [Campylobacter coli]
          Length = 255

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 114/255 (44%), Gaps = 4/255 (1%)

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ V+ RR
Sbjct: 2   LKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLIELLNLFLTHRKTVIIRR 60

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F LTE Q +AIL
Sbjct: 61  TIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAIL 120

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L  L  LE  +I++EL  L+ E  ++D +L S     N I  E++E++  F      
Sbjct: 121 DMKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIRSKFDVPRIT 180

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                                +       +           K       A+   + D ++
Sbjct: 181 QIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIE 240

Query: 553 IALHAHTTDRILLLS 567
               A+T D ++ ++
Sbjct: 241 SFFTANTHDTLMFVT 255



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 11/35 (31%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +    R Y +          KRGG G L    + 
Sbjct: 201 VVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYD 235


>gi|47419982|gb|AAT27343.1| DNA gyrase A [Campylobacter jejuni]
          Length = 261

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 4/261 (1%)

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+
Sbjct: 2   IRVVIELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRK 60

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
            V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E 
Sbjct: 61  TVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSEL 120

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F
Sbjct: 121 QANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF 180

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                                      +       +           K       A+   
Sbjct: 181 DVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTY 240

Query: 547 EGDSLKIALHAHTTDRILLLS 567
           + D ++    A+T D ++ ++
Sbjct: 241 DDDFIESFFTANTHDTLMFVT 261



 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 11/35 (31%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +    R Y +          KRGG G L    + 
Sbjct: 207 VVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYD 241


>gi|83416335|gb|ABC18203.1| DNA gyrase subunit A [bacterium Ad#39A]
 gi|83416337|gb|ABC18204.1| DNA gyrase subunit A [bacterium Ad#39B]
 gi|83416339|gb|ABC18205.1| DNA gyrase subunit A [bacterium Ad#43]
 gi|83416341|gb|ABC18206.1| DNA gyrase subunit A [bacterium Ad#46]
 gi|83416343|gb|ABC18207.1| DNA gyrase subunit A [bacterium BA#3]
 gi|83416347|gb|ABC18209.1| DNA gyrase subunit A [bacterium CP#9]
 gi|83416349|gb|ABC18210.1| DNA gyrase subunit A [bacterium CP#27]
 gi|83416351|gb|ABC18211.1| DNA gyrase subunit A [bacterium CP#41]
 gi|83416353|gb|ABC18212.1| DNA gyrase subunit A [bacterium CP#58]
 gi|83416355|gb|ABC18213.1| DNA gyrase subunit A [bacterium CP#65]
 gi|83416357|gb|ABC18214.1| DNA gyrase subunit A [bacterium CP#71]
 gi|83416363|gb|ABC18217.1| DNA gyrase subunit A [bacterium Den#20]
 gi|83416367|gb|ABC18219.1| DNA gyrase subunit A [bacterium KC1#4]
 gi|83416369|gb|ABC18220.1| DNA gyrase subunit A [bacterium KC1#5]
 gi|83416371|gb|ABC18221.1| DNA gyrase subunit A [bacterium KC1#8]
 gi|83416373|gb|ABC18222.1| DNA gyrase subunit A [bacterium KC1#11]
 gi|83416375|gb|ABC18223.1| DNA gyrase subunit A [bacterium PP#26A]
 gi|83416377|gb|ABC18224.1| DNA gyrase subunit A [bacterium PP#26B]
 gi|83416379|gb|ABC18225.1| DNA gyrase subunit A [bacterium PP#47]
 gi|83416381|gb|ABC18226.1| DNA gyrase subunit A [bacterium PP#50]
 gi|83416383|gb|ABC18227.1| DNA gyrase subunit A [bacterium PP#59]
 gi|83416385|gb|ABC18228.1| DNA gyrase subunit A [bacterium PP#67]
 gi|83416389|gb|ABC18230.1| DNA gyrase subunit A [bacterium Re#27]
 gi|83416393|gb|ABC18232.1| DNA gyrase subunit A [bacterium Re#38A]
 gi|83416397|gb|ABC18234.1| DNA gyrase subunit A [bacterium Re#60]
 gi|83416401|gb|ABC18236.1| DNA gyrase subunit A [bacterium Re#70B]
 gi|83416403|gb|ABC18237.1| DNA gyrase subunit A [bacterium Va#12]
 gi|83416405|gb|ABC18238.1| DNA gyrase subunit A [bacterium Va#23]
 gi|83416407|gb|ABC18239.1| DNA gyrase subunit A [bacterium WAT#4]
          Length = 36

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQP+  R PL+   GNFG+   D A
Sbjct: 1   DSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPA 36


>gi|309800472|ref|ZP_07694627.1| DNA gyrase subunit A [Streptococcus infantis SK1302]
 gi|308115891|gb|EFO53412.1| DNA gyrase subunit A [Streptococcus infantis SK1302]
          Length = 144

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           MSR   GV+  + ++G  + V    I +    +    + Y +           R G G  
Sbjct: 1   MSRIATGVKGVNLREGD-AVVGARVITDQDEVLIITEKGYGKRTVATEYPTKGRAGKGMK 59

Query: 740 VPKGFPRSGKFLS 752
                 ++G    
Sbjct: 60  TANVTEKNGPLAG 72



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           ++L     +V A V     ++L+++ KG       +E     R G   KT         +
Sbjct: 11  VNLREGDAVVGARVITDQDEVLIITEKGYGKRTVATEYPTKGRAGKGMKTANVTEKNGPL 70

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICE 707
             ++ V GD  + ++ +   ++  ++  I +  R   GV++     D  I         E
Sbjct: 71  AGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTSVAAAE 130

Query: 708 GLTW 711
               
Sbjct: 131 KEEV 134



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
           ++    G   + +   + +     +T  D V ++ E          + P   R GKG++ 
Sbjct: 1   MSRIATGVKGVNLREGDAVVGARVITDQDEVLIITEKGYGKRTVATEYPTKGRAGKGMKT 60

Query: 690 QSY--KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +   K+G ++ ++  K  E L  I           N        R  +G  V +   
Sbjct: 61  ANVTEKNGPLAGLLTVKGDEDLMIITDT--GVMIRTNVANISQTGRSTMGVKVMRLDQ 116


>gi|297180058|gb|ADI16283.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), a
          subunit [uncultured bacterium HF0010_16H03]
          Length = 89

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)

Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI------IHAMSEMGLDF 68
          +SL+   EE YL YA+  I +RA+P++ DG KPV RRI      +  M ++ +  
Sbjct: 10 ISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRIYMQCQSLVLMLDLNIKN 64


>gi|83416333|gb|ABC18202.1| DNA gyrase subunit A [bacterium Ad#33]
          Length = 36

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQP+  R PL+   GNFG+   D A
Sbjct: 1   DSSIYDALVRLAQPWSMRIPLVDSNGNFGSPGNDPA 36


>gi|290578681|gb|ADD51237.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578683|gb|ADD51238.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578685|gb|ADD51239.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 1/120 (0%)

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+  +  L+E + GPDFPTGG IV  +  I  +Y  GRG   VR++  +EE   G   I 
Sbjct: 1   PDADVNDLMEALPGPDFPTGG-IVMGKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTIT 59

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PY V K++LIE+IAEL+  KRI  +  I DES  +   +     R    ++++ ++
Sbjct: 60  VTELPYMVNKAKLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|290578697|gb|ADD51245.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 1/120 (0%)

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+  +  L+E + GPDFPTGG IV  +  I  +Y  GRG   VR++  +EE   G   I 
Sbjct: 1   PDADVNDLMEALPGPDFPTGG-IVMGKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTIA 59

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PY V K++LIE+IAEL+  KRI  +  I DES  +   +     R    ++++ ++
Sbjct: 60  VTELPYMVNKAKLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|83416359|gb|ABC18215.1| DNA gyrase subunit A [bacterium Cu#20A]
          Length = 36

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQ +  R PL+   GNFG+   D A
Sbjct: 1   DSSIYDALVRLAQSWSMRMPLVDSNGNFGSPGNDPA 36


>gi|7025462|gb|AAF35892.1| topoisomerase II [Mytilus edulis]
          Length = 226

 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 20  VSLRFALEERYLAYA-LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +S    +    + ++ +    ER+IP L DG KP  R++I    +  L       K A++
Sbjct: 148 ISYNEFINRELVLFSNMD--NERSIPSLVDGLKPGQRKVIFTCIKRNLI---RELKVAQL 202

Query: 79  VGEVI--GKLHPHGDQSVYDSLVRL 101
            G V      H HG+QS+  +++ L
Sbjct: 203 AGSVAEQSSYH-HGEQSLMSTIINL 226


>gi|83416365|gb|ABC18218.1| DNA gyrase subunit A [bacterium Kar#17]
          Length = 36

 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQP+  R PL+   GNFG+   D A
Sbjct: 1   DTSIYDALVRLAQPWSMRLPLVDSNGNFGSPGNDPA 36


>gi|69250183|ref|ZP_00605119.1| DNA gyrase/topoisomerase IV, subunit A [Enterococcus faecium DO]
 gi|68193991|gb|EAN08551.1| DNA gyrase/topoisomerase IV, subunit A [Enterococcus faecium DO]
          Length = 202

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 83/207 (40%), Positives = 131/207 (63%), Gaps = 6/207 (2%)

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR ++R++ + +
Sbjct: 1   MNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 60

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE 
Sbjct: 61  RLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEM 120

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I+ E   L  E++++  +L S ++  N +  E++   + +        RR+   E   A
Sbjct: 121 KIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD-----DRRSPLQEREEA 175

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS 532
            KA  +  M+  EP+T+V+S  GW+RS
Sbjct: 176 -KAMSEHDMLPSEPVTIVLSQMGWVRS 201


>gi|290578687|gb|ADD51240.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578689|gb|ADD51241.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578691|gb|ADD51242.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578693|gb|ADD51243.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578695|gb|ADD51244.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578699|gb|ADD51246.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578703|gb|ADD51248.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578705|gb|ADD51249.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578707|gb|ADD51250.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578709|gb|ADD51251.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578711|gb|ADD51252.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578713|gb|ADD51253.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578715|gb|ADD51254.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578717|gb|ADD51255.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 1/120 (0%)

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+  +  L+E + GPDFPTGG IV  +  I  +Y  GRG   VR++  +EE   G   I 
Sbjct: 1   PDADVNDLMEALPGPDFPTGG-IVMGKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTIA 59

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PY V K+ LIE+IAEL+  KRI  +  I DES  +   +     R    ++++ ++
Sbjct: 60  VTELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|83416345|gb|ABC18208.1| DNA gyrase subunit A [bacterium BA#39]
          Length = 36

 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQ +  R PL+   GNFG+   D A
Sbjct: 1   DSSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPA 36


>gi|47420004|gb|AAT27354.1| DNA gyrase A [Campylobacter fetus]
          Length = 260

 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 114/259 (44%), Gaps = 4/259 (1%)

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ ++F  + ME  F + M  ++  + P+V  L  +LK +L HR+ V+ RR
Sbjct: 2   LKRDAMSEIVLNNLFKSTQMEVTFGVIMLAIN-NKEPKVFSLLELLKLFLNHRKTVIIRR 60

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAIL 432
           + F +Q    R  IL+GL IA  NID +I +I+           ++++F L+E Q +AIL
Sbjct: 61  TIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAKFGLSELQSNAIL 120

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  ++++EL  +L   EK+D++L S     N I  E+ E+K  F      
Sbjct: 121 DMRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRIT 180

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                                +       +           K       A+   + D ++
Sbjct: 181 DIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIE 240

Query: 553 IALHAHTTDRILLLSTDGK 571
                 + D ++ ++  G+
Sbjct: 241 SFFTCMSHDTLMFVTDRGQ 259



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
            +   ++ ++ +G    V         R  KGK  +    ++ ++      + D +  V 
Sbjct: 196 PNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVT 255

Query: 666 ENRKL 670
           +  +L
Sbjct: 256 DRGQL 260



 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 12/41 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           I      +    R Y +          KRGG G +    + 
Sbjct: 195 IPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYD 235


>gi|218679283|ref|ZP_03527180.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 316

 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 66/322 (20%), Positives = 123/322 (38%), Gaps = 53/322 (16%)

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            G  P+ + L  +L+ +++ R EV+ RR+ F ++    R  +L GL IA  NIDE+I +I
Sbjct: 3   NGGKPEQLALLDMLRAFVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVI 62

Query: 408 RNEDK-----------------------------PKPVMVSRFSLTENQVDAILNLRLRS 438
           R                                  +      ++L+E Q  AIL LRL  
Sbjct: 63  RQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRLAR 122

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  L   +I  EL+ +  E +    +L+S  +    +  E+  V++ F        RRT 
Sbjct: 123 LTALGRDEIGDELNKIGEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTP-----RRTE 177

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDS 550
             +          + +I +E + V +S+ G+I+          +      S +  ++ D 
Sbjct: 178 IVDGGLEMD---DEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDF 234

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           +      +T   +L  S+ G  Y      L   +    G+A+  ++ L   + I T    
Sbjct: 235 VSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTILPL 294

Query: 609 DSTC------KLLVVSSKGNAF 624
                      ++  +++G   
Sbjct: 295 PEDEASWDNLDVMFSTTRGTVR 316



 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 2/59 (3%)

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           DGG+       I      +  +   Y +          +RGG G        R   F+S
Sbjct: 180 DGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM--TTRDEDFVS 236


>gi|290578671|gb|ADD51232.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578673|gb|ADD51233.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578675|gb|ADD51234.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578677|gb|ADD51235.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578679|gb|ADD51236.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 1/120 (0%)

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+  +  L+E + GPDFPTGG IV  +  I  +Y  GRG   VR++  +EE   G   I 
Sbjct: 1   PDADVNDLMEALPGPDFPTGG-IVMGKSEIRHAYETGRGNIVVRSKTDIEEDKNGKQTIA 59

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PY V K+ LIE+IAEL+  KRI  +  I DES  +   +     R    ++++ ++
Sbjct: 60  VTELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|83416361|gb|ABC18216.1| DNA gyrase subunit A [bacterium Cu#22]
          Length = 36

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQ +  R PL+   GNFG+   D A
Sbjct: 1   DTSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPA 36


>gi|83416395|gb|ABC18233.1| DNA gyrase subunit A [bacterium Re#58]
          Length = 36

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+L RLAQP+  R PL+   GNFG+   D A
Sbjct: 1   DSSIYDALARLAQPWSMRMPLVDSNGNFGSPGNDPA 36


>gi|10444196|gb|AAG17769.1| gyrase subunit A [Methylobacterium extorquens AM1]
 gi|10444198|gb|AAG17770.1| gyrase subunit A [Methylophilus methylotrophus]
 gi|10444200|gb|AAG17771.1| gyrase subunit A [Methylobacillus sp. SK1]
          Length = 33

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/33 (63%), Positives = 27/33 (81%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           IGK HPHGD +VY+++VR+AQPF  RY L+ GQ
Sbjct: 1   IGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQ 33


>gi|313640113|gb|EFS04735.1| DNA gyrase, A subunit [Listeria seeligeri FSL S4-171]
          Length = 140

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTG-DHVA 662
           V +   K+LVV+ KG       S+     R G   KT         +  +  VTG + + 
Sbjct: 3   VLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLM 62

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++  +  L+ F ID + +  R   GV+L    +      + 
Sbjct: 63  LMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 103



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 17/49 (34%)

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +    +    + Y +        L  RGG+G        ++G  ++
Sbjct: 3   VLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 51



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 5/95 (5%)

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRL--QSYKDGGISDVICFKICEGLT 710
           V    + V VV E          Q P  +RG  GV+    + K+G +  +      E L 
Sbjct: 3   VLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLM 62

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +  +                 R  +G  + +   
Sbjct: 63  LMTVS--GVLIRFEIDTVSQTGRSAMGVKLIRLDE 95


>gi|290578701|gb|ADD51247.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+  +  L+E + GPDFPTGG IV  +  I  +Y  GRG   VR++  +EE   G   I 
Sbjct: 1   PDADVNDLMEALPGPDFPTGG-IVMGKSEIRHAYETGRGNIVVRSKTDIEEDKNGKQTIA 59

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           V E+PY V K+ LIE+IAEL+  KRI  +  I DES  +   +     R    ++++ ++
Sbjct: 60  VAELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|6166255|gb|AAF04746.1| DNA gyrase subunit A [Bacteroides fragilis]
          Length = 52

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 12/57 (21%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSV------YDSLVRLAQPFVQRYPLISG 114
           +G D+  A+KKSAR+VG+VIGK HPHGD +V      + +       F  RY L+ G
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDLAVLQHHRPHGAA------FSLRYMLVDG 52


>gi|83416399|gb|ABC18235.1| DNA gyrase subunit A [bacterium Re#70A]
          Length = 36

 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQP+  R P +   GNFG+   D A
Sbjct: 1   DSSIYDALVRLAQPWSMRMPHVDSNGNFGSPGNDPA 36


>gi|47419984|gb|AAT27344.1| DNA gyrase A [Campylobacter jejuni]
          Length = 246

 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 118/237 (49%), Gaps = 12/237 (5%)

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R    ++++ ++F  + ME+ F + + +    + P++  L  +L  +L HR+ 
Sbjct: 1   RVVIELKREAMSEIVLNNLFKSTTMESTFGV-IMLAIHNKEPKIFSLLELLNLFLTHRKT 59

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQ 427
           V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N         S   +F L+E Q
Sbjct: 60  VIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQ 119

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F 
Sbjct: 120 ANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFD 179

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
                        ++         + +I  E + V I++RG+I+ + S   +     
Sbjct: 180 VPR--------ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRG 228



 Score = 39.8 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 11/35 (31%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +    R Y +          KRGG G L    + 
Sbjct: 205 VVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYD 239


>gi|156347131|ref|XP_001621647.1| hypothetical protein NEMVEDRAFT_v1g144180 [Nematostella vectensis]
 gi|156207799|gb|EDO29547.1| predicted protein [Nematostella vectensis]
          Length = 170

 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E++ K VS    + +  + ++ +T  ER+IP L DG KP  R+++    +        
Sbjct: 91  LYEKDTKRVSYCDFVNKELILFS-NTDNERSIPSLVDGLKPGQRKVMFTCFKRN---DKR 146

Query: 72  FKKSARIVGEV--IGKLHPHGD 91
             K A++ G +  +   H HG+
Sbjct: 147 EVKVAQLAGSIAELSAYH-HGE 167


>gi|83416387|gb|ABC18229.1| DNA gyrase subunit A [bacterium PS#22]
          Length = 36

 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+Y +LVRLAQP+  R PL+   GNFG+   D A
Sbjct: 1   DSSIYVALVRLAQPWTMRMPLVDSNGNFGSPGNDPA 36


>gi|47420008|gb|AAT27356.1| DNA gyrase A [Campylobacter lari]
          Length = 237

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 4/231 (1%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ F + + +    + P+V  L  +L  +L HR+ V+ RR+ + +Q 
Sbjct: 6   EIVLNNLFKSTTMESTFGV-IMLAIHNKEPKVFSLIELLNLFLNHRKTVIIRRTIYELQK 64

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N           + +F L+E Q +AIL+++L  L
Sbjct: 65  ARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQKFGLSELQSNAILDMKLGRL 124

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  +I +EL  LLAE E++D +L S     N I  E++E++  F             
Sbjct: 125 TGLEREKIDNELRELLAEIERLDQILKSETLLENLIKDELKEIRTKFDVPRITQIEEDYD 184

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                         +       +           K       A+   + D 
Sbjct: 185 DIDIEDLIPNENMVVTINHRGYIKXVPSKQYEKQKRGGKGKVAVTTYDDDF 235


>gi|270707329|ref|ZP_06223100.1| DNA gyrase/topoisomerase IV, A subunit [Haemophilus influenzae
           HK1212]
 gi|270315774|gb|EFA27905.1| DNA gyrase/topoisomerase IV, A subunit [Haemophilus influenzae
           HK1212]
          Length = 170

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 67/172 (38%), Positives = 107/172 (62%), Gaps = 7/172 (4%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            +  I + Y  GRG  ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK+
Sbjct: 4   PKSEIRKIYEQGRGSIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKK 58

Query: 295 IPLLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           +P+LEDIRDE+  +   RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P
Sbjct: 59  LPMLEDIRDEADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKP 118

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
            V  L  IL EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I
Sbjct: 119 AVKGLLEILNEWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVI 170


>gi|10802663|gb|AAG23554.1|AF244605_1 DNA gyrase subunit A [Carboxydothermus hydrogenoformans]
          Length = 160

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 4/157 (2%)

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
              DES      ++    R  +P +++  +F  + ++  F + M  L     P+++ L  
Sbjct: 3   GFTDESDRKGMRIVIELKRDANPQVVLNQLFKHTQLQDTFGIIMLALVD-NQPRILNLKE 61

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPV 416
           IL  +L H+++V+ RR+ + +   + R  IL+GL IA  N+DE+I IIR        +  
Sbjct: 62  ILFYYLEHQKDVVTRRTRYDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREG 121

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
           ++SRF LTE Q  AIL++RL+ L  LE  +I  E   
Sbjct: 122 LMSRFGLTEKQAQAILDMRLQRLTALEREKIDEEYRE 158


>gi|315273175|ref|ZP_07869218.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
 gi|313616198|gb|EFR89280.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
          Length = 42

 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGF 50
              + +  ++L   +   +L YA+S I  RA+PD+RDG 
Sbjct: 3  ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGL 42


>gi|76664751|emb|CAJ17814.1| DNA gyrase alpha subunit [Candidatus Phytoplasma solani]
          Length = 71

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/71 (52%), Positives = 51/71 (71%)

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
           + EP+V P+  PNLL NG +GIAVGMAT IP+HN+ E+ +  ++ I N  ISI +L+++I
Sbjct: 1   EKEPLVLPTALPNLLINGATGIAVGMATKIPTHNLGEVIDGIISYIHNKNISINQLMQHI 60

Query: 222 IGPDFPTGGII 232
            GPDFPTG   
Sbjct: 61  KGPDFPTGVNF 71


>gi|47420000|gb|AAT27352.1| DNA gyrase A [Campylobacter fetus]
          Length = 248

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 108/249 (43%), Gaps = 4/249 (1%)

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ ++F  + ME  F + M  ++  + P+V  L  +LK +L HR+ V+ RR+
Sbjct: 1   KRDAMSEIVLNNLFKSTQMEVTFGVIMLAIN-NKEPKVFSLLELLKLFLNHRKTVIIRRT 59

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILN 433
            F +Q    R  IL+GL IA  NID +I +I+           ++++F L+E Q +AIL+
Sbjct: 60  IFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAKFGLSELQSNAILD 119

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  ++++EL  +L   EK+D++L S     N I  E+ E+K  F       
Sbjct: 120 MRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITD 179

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
                               +       +           K       A+   + D ++ 
Sbjct: 180 IVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIES 239

Query: 554 ALHAHTTDR 562
                + D 
Sbjct: 240 FFTCMSHDT 248



 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 12/41 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           I      +    R Y +          KRGG G +    + 
Sbjct: 193 IPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYD 233


>gi|242095808|ref|XP_002438394.1| hypothetical protein SORBIDRAFT_10g016324 [Sorghum bicolor]
 gi|241916617|gb|EER89761.1| hypothetical protein SORBIDRAFT_10g016324 [Sorghum bicolor]
          Length = 69

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 101 LAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ F       L+   G FG     G  AA+ RY    ++ +   I    D+  +D+  
Sbjct: 1   MAQDFVGSNNINLLRPNGQFGTKLEGGKDAASARYIFTELSSITRRIFNENDDILLDY-L 59

Query: 157 TYNEEDSEPV 166
             + +  EP 
Sbjct: 60  HEDGQSIEPS 69


>gi|167946604|ref|ZP_02533678.1| DNA gyrase, subunit A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 41

 Score = 71.0 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           +L  +D++ VDF   Y+  + EP V P++ PNLL NG++GI
Sbjct: 1   MLDDLDKETVDFVPNYDNSEHEPAVLPARIPNLLINGSTGI 41


>gi|47420002|gb|AAT27353.1| DNA gyrase A [Campylobacter fetus]
          Length = 239

 Score = 71.0 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 4/239 (1%)

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
            ++F  + ME  F + M  ++  + P+V  L  +LK +L HR+ V+ RR+ F +Q    R
Sbjct: 1   NNLFKSTQMEVTFGVIMLAIN-NKEPKVFSLLELLKLFLNHRKTVIIRRTIFELQKARAR 59

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             IL+GL IA  NID +I +I+           ++++F L+E Q +AIL++RL  L  LE
Sbjct: 60  AHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAKFGLSELQSNAILDMRLSKLTGLE 119

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             ++++EL  +L   EK+D++L S     N I  E+ E+K  F                 
Sbjct: 120 REKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDIDV 179

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                     +       +           K       A+   + D ++      + D 
Sbjct: 180 EDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDT 238



 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 12/41 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           I      +    R Y +          KRGG G +    + 
Sbjct: 183 IPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYD 223


>gi|170064497|ref|XP_001867550.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167881880|gb|EDS45263.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 540

 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 67  DFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                  K  ++ G V  +   H HG+QS+  ++V L Q F       L+  +  FG   
Sbjct: 429 RNDKREVKVTQLTGSVAEMSAYH-HGEQSLCSTIVDLTQNFVSSNNINLLYPRDQFGTRL 487

Query: 122 -DGDSAAAYRYTEARMTQVA 140
                +A  R+    M+ + 
Sbjct: 488 PGVKDSAKPRFILTMMSALT 507


>gi|83416391|gb|ABC18231.1| DNA gyrase subunit A [bacterium Re#30]
          Length = 36

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 23/36 (63%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQP+  R PL+    NFG    D A
Sbjct: 1   DSSIYDALVRLAQPWSMRMPLVDSNDNFGLPGNDPA 36


>gi|32481442|gb|AAP84067.1| topoisomerase [Enterococcus casseliflavus]
          Length = 38

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 25/33 (75%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLR 33


>gi|169842194|ref|ZP_02875299.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 61

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 21/29 (72%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           D SVY ++VR+AQ F  RY LI G GNFG
Sbjct: 33  DSSVYGAMVRMAQDFNMRYELIDGHGNFG 61


>gi|242095832|ref|XP_002438406.1| hypothetical protein SORBIDRAFT_10g016495 [Sorghum bicolor]
 gi|241916629|gb|EER89773.1| hypothetical protein SORBIDRAFT_10g016495 [Sorghum bicolor]
          Length = 69

 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 101 LAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ F   +   L+   G FG     G  AA+ RY    ++ +   I    D   +D+  
Sbjct: 1   MAQDFFGSKNINLLRTNGQFGTRLEGGKDAASARYIFTELSSITRRIFNENDHILLDY-L 59

Query: 157 TYNEEDSEPV 166
             + +  EP 
Sbjct: 60  REDGQSIEPS 69


>gi|255039923|gb|ACT99718.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 30

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 24/30 (80%)

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           QGNFG++DGD+AAA RYTE RM ++   +L
Sbjct: 1   QGNFGSVDGDNAAAMRYTEIRMAKIGHELL 30


>gi|300709311|ref|XP_002996821.1| hypothetical protein NCER_100008 [Nosema ceranae BRL01]
 gi|239606147|gb|EEQ83150.1| hypothetical protein NCER_100008 [Nosema ceranae BRL01]
          Length = 713

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
              T +++    +S+   + +  + ++++    R+IP++ DGFKP  R+I+    +
Sbjct: 631 EQGTFLDQRPSEISISDFINKELILFSMADNF-RSIPNVLDGFKPGQRKILFTCFK 685


>gi|153840090|ref|ZP_01992757.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149746310|gb|EDM57375.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 169

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 107/158 (67%), Gaps = 2/158 (1%)

Query: 297 LLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           ++ED+RDES  +   RIV+ P++  +D DLLM  +F  +D+E  + +N+N++ +   PQV
Sbjct: 1   MVEDLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQV 60

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL EW+  RR  + RR  +R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK
Sbjct: 61  KGLVQILSEWIEFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPK 120

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
            V++ RF +T+ Q DAIL+ +LR L KLEE +I+ E D
Sbjct: 121 AVLMERFGITDIQADAILDTKLRHLAKLEEMKIRGEQD 158


>gi|294463058|gb|ADE77067.1| unknown [Picea sitchensis]
          Length = 183

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 12/107 (11%)

Query: 614 LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVA 662
           LL+VS  G    V  S        R G    K+  E+++  +  V         + + V 
Sbjct: 64  LLLVSESGYGKRVPLSSFRITPLKRVGLIGYKLLPEDRVAALFVVGLSLSDDGESDEQVV 123

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +V  +  +    +  I   SR  KGVRL   + GG    +       
Sbjct: 124 LVSHSGMVNRIMVRAISIQSRTAKGVRLMRLEHGGKIQSVSVVGPSE 170



 Score = 42.5 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/142 (9%), Positives = 38/142 (26%), Gaps = 36/142 (25%)

Query: 634 NTRKGKTFLKVSSEEKMKLV----------------------VKVTGDHVAVVGENRKLL 671
              +G   +++  E+K+  +                        +T   + +V E+    
Sbjct: 15  RKSRGLISMRLRGEDKVASMDIVPAAVQQELKNALLSSKSQGKTITAPWLLLVSESGYGK 74

Query: 672 IFSIDQIP--EMSRGKGVRLQSYK---DGGISD--VICFKICEG----LTWIDSAGRSYN 720
              +       + R   V L  YK   +  ++   V+   + +        +  +     
Sbjct: 75  RVPLSSFRITPLKR---VGLIGYKLLPEDRVAALFVVGLSLSDDGESDEQVVLVSHSGMV 131

Query: 721 RSENDLLGWLGKRGGVGSLVPK 742
                    +  R   G  + +
Sbjct: 132 NRIMVRAISIQSRTAKGVRLMR 153


>gi|156394521|ref|XP_001636874.1| predicted protein [Nematostella vectensis]
 gi|156223981|gb|EDO44811.1| predicted protein [Nematostella vectensis]
          Length = 394

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 100/302 (33%), Gaps = 28/302 (9%)

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++ V++++    DE  + F    + +  EP  +    P +L NG  GI  G +T +P+++
Sbjct: 2   LSTVSKMLFPPSDEPNLKF-LNEDNQRIEPEWYCPIIPTILVNGAEGIGTGYSTKVPNYD 60

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
            + I E    +++  E                   ++   +  I    ++    + V   
Sbjct: 61  PRAIAENIRKMMNGEEPE----------------EMLPWYKNFIGTITKVDDTKYSVTGN 104

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---LIIAKRIPLLEDIRDESAEDVRIV 312
             V +       + +TE+P         E + E       K  P + D ++   E     
Sbjct: 105 IEVIDD----TTLEITELPIGTWTQSYKESVLEPMLHGTDKVPPCITDYKEYHTETRVRF 160

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGILKEWLAHRRE 370
           +     +   +     +     +E     +  VL    G + +      ILKE+   R E
Sbjct: 161 VITMAENKMREAEQVGLHKKFKLEATINTSNMVLFDAMGCLKKYDTTREILKEFFTLRME 220

Query: 371 --VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
             ++ +     M   +      +   I       I+   + +     ++V R   ++   
Sbjct: 221 RYIMRKAYMEGMLTAESGKLNSQARFILEKIEGTIVIENKPKRDLITMLVQRGYPSDPVK 280

Query: 429 DA 430
             
Sbjct: 281 AW 282


>gi|224532517|ref|ZP_03673142.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
 gi|224512589|gb|EEF82965.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
          Length = 118

 Score = 63.3 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 6/116 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---- 649
           + L      V          LL+VS  G    +  S+I    R    +      +K    
Sbjct: 1   MKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGS 60

Query: 650 -MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +  +     D + +V +  K L     ++ E  +  +G+++    +  +  V  F
Sbjct: 61  VVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSVSKF 116



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 2/65 (3%)

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS-G 748
              K+G +  V    + E    +  +   Y +  N       KRG  G    K   +  G
Sbjct: 1   MKLKEGDL-FVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAG 59

Query: 749 KFLSS 753
             + +
Sbjct: 60  SVVDA 64


>gi|301626919|ref|XP_002942632.1| PREDICTED: DNA topoisomerase 2-alpha, partial [Xenopus (Silurana)
            tropicalis]
          Length = 1458

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 106/300 (35%), Gaps = 28/300 (9%)

Query: 138  QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             +A L+   +D+  + F    + +  EP  +    P +L NG  GI  G +  IP+++ +
Sbjct: 755  PLARLLFPAMDDSVLKFMYD-DNQKVEPEWYIPIIPTVLVNGAEGIGTGWSCKIPNYDTR 813

Query: 198  EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
            EI      L+D  E            P  P+        + +++   LG   + +     
Sbjct: 814  EIVSNIGRLLDGLEPL----------PMLPSYKNF----KGLIQ--ELGPNQYILNGEVS 857

Query: 258  VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVRIVLF 314
            V +    +  I ++E+P +       E++ E +     K  PL+ D ++   +     + 
Sbjct: 858  VLD----NTTIEISELPVRTWTQNYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTVKFVV 913

Query: 315  PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREVL 372
                    +     +  +  ++T    N  VL      + +      IL+E+   R +  
Sbjct: 914  KLTEQKLMEAEAAGLHKVFKLQTPLTCNSMVLFDHVGCLRKYETATDILREFFVLRLKYY 973

Query: 373  FRRSSFR--MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
              R  +   M   +      +   I      +I+   + + +   ++V R   ++     
Sbjct: 974  SLRKDWLVGMLTAEASRLSNQARFILEKIEGKIVIENKPKKELIQMLVQRGYDSDPVKSW 1033


>gi|32481440|gb|AAP84066.1| topoisomerase [Enterococcus casseliflavus]
 gi|32481446|gb|AAP84069.1| topoisomerase [Enterococcus gallinarum]
          Length = 29

 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 23/29 (79%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           A+ VG ++G  HPHGD S+Y+++VR++Q 
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYEAMVRMSQD 29


>gi|70940701|ref|XP_740732.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56518648|emb|CAH81733.1| hypothetical protein PC000787.04.0 [Plasmodium chabaudi chabaudi]
          Length = 300

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 9/174 (5%)

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIA 633
           L    + +     + I +   +  +  I     Y+     L+V S  G   I+     + 
Sbjct: 4   LNVSEIQTSLYDSKGIPISQLIKCSTTITGLAKYEQDKKYLIVCSENGKMKIINNDVFLK 63

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
             +KG    K             + D+  V  +N  ++ F +  +    +   G +  S 
Sbjct: 64  KKKKGIKLFKNKKNIFFNYCN--SNDNCIVGTKNGYIIQFPLSSLKISKKNSLGNKCMSL 121

Query: 693 -KDGGISDVICFKIC----EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
            KD  + D+I ++      + L  I  +   + +        + K+ G G  + 
Sbjct: 122 KKDDKVVDLISYENNPENLKNLKIIFLSKNGHGKMIGLDEIKVQKKRGKGFKIM 175


>gi|403953|gb|AAB01009.1| DNA gyrase subunit A [Mycoplasma genitalium]
          Length = 98

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/100 (41%), Positives = 63/100 (63%), Gaps = 2/100 (2%)

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             + LIDNP+ + ++LL  I GPDFPTG  I+ ++  I   +  G+G   +R++  +E++
Sbjct: 1   GLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTK-GIESYFETGKGNVVIRSKVEIEQL 59

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            +    +VVTEIPY V K+ LIEKI EL+ A+ I  + DI
Sbjct: 60  -QTRSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADI 98


>gi|94502465|ref|ZP_01308887.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94450978|gb|EAT13981.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 66

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGP 224
           P+V P+  P+LL  G+SGIAVGMAT +P  ++ E  EA  +  D   I+IE+L++YI  P
Sbjct: 2   PLVLPTCIPHLLFYGSSGIAVGMATHMPPPHIVESFEAICSYFDYKNITIEELMKYIKAP 61

Query: 225 DFPTG 229
            FP+G
Sbjct: 62  AFPSG 66


>gi|213863328|ref|ZP_03386583.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 80

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSRGKGVRLQSYK---- 693
           T + +     +   + +  +H  +  + +  ++L+F +D +P++S+GKG ++ +      
Sbjct: 2   TLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPSAEA 61

Query: 694 ---DGGISDVICFKICEGL 709
              D G++ +        L
Sbjct: 62  AKGDDGLAHLYVLPPQSTL 80


>gi|33316580|gb|AAQ04610.1| DNA gyrase subunit A [Mycobacterium szulgai]
          Length = 97

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
                +      T D IL  +T G+ Y   A  L        G+ +  L+     + I  
Sbjct: 1   PQGXHRRHFCCSTHDWILFFTTQGRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQ 60

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                 Y+    L++ +  G     + ++  +N   G
Sbjct: 61  VIQIKSYEDAPYLVLATQNGLVKKSKLTDFDSNRSGG 97


>gi|242032529|ref|XP_002463659.1| hypothetical protein SORBIDRAFT_01g003760 [Sorghum bicolor]
 gi|241917513|gb|EER90657.1| hypothetical protein SORBIDRAFT_01g003760 [Sorghum bicolor]
          Length = 188

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 12/92 (13%)

Query: 614 LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVA 662
           LL V+  G    V  +    +     G    K+  + ++  V            + + V 
Sbjct: 76  LLFVAENGIGKRVPLNAFRLLNFNAVGLQGYKLPEDCRLAAVFIAGLSLTEDGESDEQVV 135

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
           +V ++  +    +  I   SR  +GV L   +
Sbjct: 136 LVSQSGTVNRIKVKDISIQSRHSRGVILMRLE 167


>gi|38305350|gb|AAR16193.1| antigen MLAA-44 [Homo sapiens]
          Length = 373

 Score = 57.9 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 112/360 (31%), Gaps = 23/360 (6%)

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           + +  EP  +    P +L NG  GI  G A  +P+++ +EI      +++  +       
Sbjct: 11  DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLDPH----- 65

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
                P  P       + + +      G+  + V     V +        +      QV 
Sbjct: 66  -----PMLPNYKNFKGTIQEL------GQNQYAVSGEIFVVDRNTVEITELPVRTWTQVY 114

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K +++E +      K   L+ D ++   +     +               +  +  ++T 
Sbjct: 115 KEQVLEPMLN-GTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTT 173

Query: 339 FPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA--IDRRVEILKGLL 394
              N  VL      + +   +  ILKE+   R      R  + +     +      +   
Sbjct: 174 LTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARF 233

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
           I      +I    R++     ++V R   ++            +  +  + Q      + 
Sbjct: 234 ILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEDSQNQHDDSSSDS 293

Query: 455 LA--EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
                 +    L  S      +   E+ + ++   +  +  +R++          A +++
Sbjct: 294 GTPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKRKSPSDLWKEDLAAFVEE 353


>gi|60477489|gb|AAX21681.1| ParC [Francisella novicida]
 gi|213950468|gb|ACJ54507.1| ParC [Francisella sp. FSC159]
 gi|213950470|gb|ACJ54508.1| ParC [Francisella novicida]
 gi|213950472|gb|ACJ54509.1| ParC [Francisella novicida]
 gi|213950474|gb|ACJ54510.1| ParC [Francisella novicida]
          Length = 174

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 6/175 (3%)

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           + Y+ G G  R +A +  +        +V+T++P+QV  + ++E+IA  +  ++I  +++
Sbjct: 2   DVYKSGNGSIRQQAVYEYD----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 301 IRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           I+DES +    +IVL+      +   +M  +   +D+E  F +NMN++ +   PQV  L 
Sbjct: 58  IQDESDDKEPVKIVLYSATTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            IL EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D P
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|47420010|gb|AAT27357.1| DNA gyrase A [Campylobacter lari]
          Length = 157

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/149 (33%), Positives = 87/149 (58%), Gaps = 4/149 (2%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ + + + +    + P+V     +L  +L HR+ V+ RR+ + +Q 
Sbjct: 4   EIVLNNLFKSTTMESTWGV-IMLAIHNKEPKVFSFFELLNLFLNHRKTVIIRRTIYELQK 62

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N           + +F L+E Q +AIL+++L  L
Sbjct: 63  ARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQKFGLSELQSNAILDMKLGRL 122

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
             LE  +I +EL  LLAE E++D +L S 
Sbjct: 123 TGLEREKIDNELRELLAEIERLDQILKSE 151


>gi|213950466|gb|ACJ54506.1| ParC [Francisella sp. FSC156]
          Length = 174

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 6/175 (3%)

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           + Y+ G G  R +A +  +        +V+T++P+QV  + ++E+IA  +  ++I  +++
Sbjct: 2   DVYKSGNGSIRQQAVYEYD----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 301 IRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           I+DES +    +IVL+      +   +M  +   +D+E  F +NMN++ +   PQV  L 
Sbjct: 58  IQDESDDKEPVKIVLYSATTKSNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            IL EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D P
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|111305596|gb|AAI21351.1| LOC779457 protein [Xenopus (Silurana) tropicalis]
          Length = 757

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++    + +  + ++ S   ER+IP L DG KP  R+++    +  
Sbjct: 711 LTYNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKKK 755


>gi|60477495|gb|AAX21684.1| ParC [Francisella tularensis subsp. mediasiatica FSC147]
 gi|60477497|gb|AAX21685.1| ParC [Francisella tularensis subsp. mediasiatica]
 gi|213950476|gb|ACJ54511.1| ParC [Francisella novicida]
          Length = 174

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 6/175 (3%)

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           + Y+ G G  R +A +  +        +V+T++P+QV  + ++E+IA  +  ++I  +++
Sbjct: 2   DVYKSGNGSIRQQAVYEYD----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 301 IRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           I+DES +    +IVL+      +   +M  +   +D+E  F +NMN++ +   PQV  L 
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            IL EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D P
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|60477491|gb|AAX21682.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477503|gb|AAX21688.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477509|gb|AAX21691.1| ParC [Francisella tularensis subsp. tularensis]
          Length = 174

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 101/174 (58%), Gaps = 6/174 (3%)

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           + Y+ G G  R +A +  +        +V+T++P+QV  + ++E+IA  +  ++I  +++
Sbjct: 2   DVYKSGNGSIRQQAVYEYD----NHSNVVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 301 IRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           I+DES +    +IVL+      +   +M  +   +D+E  F +NMN++ +   PQV  L 
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            IL EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D 
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDD 171


>gi|60477493|gb|AAX21683.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477507|gb|AAX21690.1| ParC [Francisella tularensis subsp. tularensis]
          Length = 174

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 101/174 (58%), Gaps = 6/174 (3%)

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           + Y+ G G  R +A +  +        +V+T++P+QV  + ++E+IA  +  ++I  +++
Sbjct: 2   DVYKSGNGSIRQQAVYEYD----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 301 IRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           I+DES +    +IVL+      +   +M  +   +D+E  F +NMN++ +   PQV  L 
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            IL EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D 
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDD 171


>gi|60477483|gb|AAX21678.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477485|gb|AAX21679.1| ParC [Francisella tularensis subsp. holarctica]
          Length = 174

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 103/175 (58%), Gaps = 6/175 (3%)

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           + Y+ G G  R +A +  +        +V+T++P+QV  + ++E+IA  +  ++I  +++
Sbjct: 2   DVYKSGNGSIRQQAVYEYD----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 301 IRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           I+DES +    +IVL+      +   +M  + + +D+E  F +NMN++ +   PQV  L 
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            IL EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D P
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|60477487|gb|AAX21680.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477499|gb|AAX21686.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477501|gb|AAX21687.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477505|gb|AAX21689.1| ParC [Francisella tularensis subsp. holarctica FSC200]
 gi|60477511|gb|AAX21692.1| ParC [Francisella tularensis subsp. holarctica]
          Length = 174

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 103/175 (58%), Gaps = 6/175 (3%)

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           + Y+ G G  R +A +  +        +V+T++P+QV  + ++E+IA  +  ++I  +++
Sbjct: 2   DVYKSGNGSIRQQAVYEYD----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 301 IRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           I+DES +    +IVL+      +   +M  + + +D+E  F +NMN++ +   PQV  L 
Sbjct: 58  IKDESDDKEPVKIVLYSATIKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            IL EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D P
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|307101850|gb|EFN50438.1| hypothetical protein CHLNCDRAFT_55891 [Chlorella variabilis]
          Length = 154

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYD---- 609
           + +  D +L  +T+G+AY+L A ++  G       A+  ++  + +  I           
Sbjct: 17  YVNDHDHLLFFTTEGRAYSLRAYDVPEGTRTAVGSAVTQVLPFDKSTRIAAMVPVSGFGA 76

Query: 610 ----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
               +   +++++ KG        +  +  R G   + V 
Sbjct: 77  ALGSAEQDVVMLTRKGQIKRTALKQFTSINRSGLVAMGVR 116



 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 17/120 (14%)

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR---GKGVRLQSYKD 694
           K   ++  ++ +  VV V   DH+       +        +PE +R   G  V  Q    
Sbjct: 1   KAGARLKEDDSLDEVVYVNDHDHLLFFTTEGRAYSLRAYDVPEGTRTAVGSAVT-QVLPF 59

Query: 695 GGISDVICFKICEG---------LTWIDSAGRSYNRSENDLLGWLGKRGG---VGSLVPK 742
              + +       G            +    +   +           R G   +G  VP+
Sbjct: 60  DKSTRIAAMVPVSGFGAALGSAEQDVVMLTRKGQIKRTALKQFTSINRSGLVAMGVRVPQ 119


>gi|1333777|emb|CAA43745.1| unnamed protein product [Mycoplasma genitalium]
          Length = 131

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 4/103 (3%)

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AI 590
                V +  L     DS+   L   T   +L  +  GK Y + A  +  G    +    
Sbjct: 29  QHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPYGFRTNKGIPA 88

Query: 591 QLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEI 631
             LI +  ++ I +    +          +  G       +E 
Sbjct: 89  VNLIKIEKDERICSLLSVNNYDDGYFFFCTKNGIVKRTSLNEF 131



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 8/123 (6%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           ++ +S+ G    +         R G   K       +   +L+V  T   +    +  K+
Sbjct: 9   VITMSTNGYLKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKV 68

Query: 671 LIFSIDQIPEMSRG-KG---VRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
                 QIP   R  KG   V L    KD  I  ++     +   +         +  + 
Sbjct: 69  YRIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSVNNYDDGYFFFCTKNGIVKRTSL 128

Query: 726 LLG 728
              
Sbjct: 129 NEF 131



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 9/123 (7%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++ +ST+G    +   +  + +  G      +    +  I    V  +   LL  + KG 
Sbjct: 9   VITMSTNGYLKRIGV-DAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGK 67

Query: 623 AFIVEESE--IIANTRKGKTF---LKVSSEEK---MKLVVKVTGDHVAVVGENRKLLIFS 674
            + +   +      T KG      +K+  +E+   +  V      +     +N  +   S
Sbjct: 68  VYRIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSVNNYDDGYFFFCTKNGIVKRTS 127

Query: 675 IDQ 677
           +++
Sbjct: 128 LNE 130


>gi|315287143|ref|ZP_07872183.1| DNA gyrase/topoisomerase IV, A subunit [Listeria ivanovii FSL
           F6-596]
 gi|313630884|gb|EFR98580.1| DNA gyrase/topoisomerase IV, A subunit [Listeria ivanovii FSL
           F6-596]
          Length = 180

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 94/172 (54%), Gaps = 9/172 (5%)

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
           ++ ++T F +NM  L     P+V+ L  IL  +L H++ V+ RR+ F ++  + R  IL+
Sbjct: 1   MTALQTTFGINMLALVD-NHPKVLNLKEILYYYLEHQKVVIRRRTEFELRKAEARAHILE 59

Query: 392 GLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
           GL IA  NID II +IR           ++++F+L++ Q  AIL++RL+ L  LE  +I+
Sbjct: 60  GLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAILDMRLQRLTGLEREKIE 119

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            E  NL+A    + ++L   ++    I  E+ E+K  ++      +RRT   
Sbjct: 120 EEYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD-----KRRTEIL 166


>gi|321473415|gb|EFX84382.1| hypothetical protein DAPPUDRAFT_3936 [Daphnia pulex]
          Length = 269

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 78/241 (32%), Gaps = 19/241 (7%)

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
            +  EP  F    P +L NG +GI  G  T IP  N +EI E    +++  + +      
Sbjct: 9   NQSIEPEYFAPIIPMVLVNGANGIGTGFKTKIPKQNPREIIENLKRMLNGEKPNPMDP-- 66

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
                 +  G      R         G           + E+          ++P +  K
Sbjct: 67  ------WFKGYRGTVERIDQFNFVISGELAVLSPTTIEITELPV--------DVPTENYK 112

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
             ++EK+      +  P++ D ++   ++    +      +   +  E       +++ +
Sbjct: 113 KSVLEKL-LCGSEECPPIITDYQEHHTDNNVRFVVTMTEKMMQQVESEGFHRAFKLQSVY 171

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
            L   +L        +     + + +    EV       R      +VE L+  L+   N
Sbjct: 172 SLRSMLLYDSNG--SLKTYNSVDDIMNEFYEVRLELYRKRRDYFSGKVEALRARLVNQNN 229

Query: 400 I 400
            
Sbjct: 230 F 230


>gi|104640687|gb|ABF73000.1| plastid DNA gyrase subunit A protein precursor [Karenia brevis]
          Length = 292

 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 59/184 (32%), Gaps = 25/184 (13%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDG---KAYTLPAGNLLSGRGHGEAIQLLID 595
                    GDSL      H  D++L  S DG       L           G A+  L+ 
Sbjct: 69  GKPCFGMMPGDSLMNLYCCHDDDKLLAFSEDGRVLMMNALAVPPPRLISAQGSALSELLP 128

Query: 596 LNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVS 645
                  VTA V              L++V+  G A  V   E+    R GK+   +++ 
Sbjct: 129 ALGEGHKVTALVVMPDFNFDDYEDEFLVLVTGCGIAKKVLIKEL-GRLRPGKSLQCMRLD 187

Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSI------DQIPEMSRGKGVRLQSYKDGGIS 698
             ++++   +  G+  +    E   +L  S+        +       GV     +   ++
Sbjct: 188 EGDELRWAHRARGNFALVCATEKGHVLRCSLGPQWRCSSLKV----GGVAALRLRGDCLT 243

Query: 699 DVIC 702
            V  
Sbjct: 244 SVAV 247


>gi|60477417|gb|AAX21645.1| ParC [Wolbachia persica]
          Length = 174

 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 103/175 (58%), Gaps = 6/175 (3%)

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E Y+ G G  R +A +  +        +V+T++P+QV  + ++E+IA  +  ++I  +++
Sbjct: 2   EVYKSGNGSIRQQAVYGYD----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 301 IRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           I+DES +    +IVL+      +   +ME +   +D+E  + +NMN++ +   PQV  L 
Sbjct: 58  IQDESDDKEPVKIVLYSATTKKNIKKIMEHLLATTDLEKSYRVNMNMIGLDNRPQVKNLL 117

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            IL +WL +R+  L RR    +  +  R+ IL+GLL+A+LNIDE+I IIRN D P
Sbjct: 118 DILNQWLEYRKHTLRRRLQASLDKVLDRLHILEGLLVAFLNIDEVIDIIRNYDDP 172


>gi|291163431|gb|ADD80742.1| ParC [Francisella endosymbiont of Dermacentor andersoni]
          Length = 168

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 97/170 (57%), Gaps = 6/170 (3%)

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            Y  G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  ++ I
Sbjct: 3   VYXSGXGSIRQQAVYEYDXHGN----VVITKLPHQVSXAAVMEQIANELKQQKITWIKXI 58

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +DES +    +IVL+      +   +M  +   +D E  F +NMN++ +   PQV  L  
Sbjct: 59  QDESDDKEPVKIVLYSATTKKNIKKIMGHLLATTDXEKNFRVNMNMIGLDNRPQVKNLLD 118

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
           IL +WL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN
Sbjct: 119 ILNQWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRN 168


>gi|213856910|ref|ZP_03384150.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 66

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I E+YR GRG
Sbjct: 1   TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRG 59

Query: 249 GFRVRAR 255
              +RAR
Sbjct: 60  KVYIRAR 66


>gi|83318125|ref|XP_731459.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23491511|gb|EAA23027.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 249

 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKIC----EGLT 710
           + D+  V  +N  ++ F +  +    +   G +  + K D  + D++ ++      + + 
Sbjct: 33  SNDNCIVGTKNGYIIQFPLSSLKISKKNSLGNKCINLKKDDKVIDLVSYENNLENLKNIK 92

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVG 737
            I  +   + +        + K+ G G
Sbjct: 93  IIFLSKNGHGKMIGLDEIKVQKKRGKG 119



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
                   + ++ D  ++ + +G     P  +L   + +       I+L  +  ++    
Sbjct: 22  NKKNIFFNYCNSNDNCIVGTKNGYIIQFPLSSLKISKKNSLGN-KCINLKKDDKVIDLVS 80

Query: 608 YDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           Y++        K++ +S  G+  ++   EI    ++GK F
Sbjct: 81  YENNLENLKNIKIIFLSKNGHGKMIGLDEIKVQKKRGKGF 120


>gi|254486417|ref|ZP_05099622.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
 gi|214043286|gb|EEB83924.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
          Length = 152

 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 5/108 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   LL ++ KG+  +    +     R G     +        +     V   D + +  
Sbjct: 38  AENLLLTITEKGSGKLSSSHDYPVRGRGGLGVTAMDKAMRGGDIVASFPVELDDQIMLAT 97

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
              + +   +  I   SR   GV++     G +   + +   +G   +
Sbjct: 98  SKGQSIRVPVQGISFRSRSAGGVKVFDTGKGEVVVSVAWIADQGDDAV 145



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               E L  +    +   +  +     +  RGG+G        R G  ++S
Sbjct: 35  MSAAENL-LLTITEKGSGKLSSSHDYPVRGRGGLGVTAMDKAMRGGDIVAS 84


>gi|68010286|ref|XP_670686.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56486176|emb|CAI03164.1| hypothetical protein PB301073.00.0 [Plasmodium berghei]
          Length = 258

 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 8/130 (6%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           L+V S  G   I+     +   +KG    K             + D+  V  +N  ++ F
Sbjct: 3   LIVCSENGKMKIINNDVFLKKKKKGIKLFKNKKNIFFNYCN--SNDNCIVGTKNGYIIQF 60

Query: 674 SIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKIC----EGLTWIDSAGRSYNRSENDLL 727
            +  +    +   G +  +  KD  + D++ ++      + L  I  +   + +      
Sbjct: 61  PLSSLKISKKNSLGNKCMNMKKDDKVVDLVSYENNSENLKNLKIIFLSKNGHGKMIGVDE 120

Query: 728 GWLGKRGGVG 737
             + K+ G G
Sbjct: 121 IKVQKKRGKG 130



 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH------ 660
           +S    +V +  G       S +  + +   G   + +  ++K+  +V    +       
Sbjct: 43  NSNDNCIVGTKNGYIIQFPLSSLKISKKNSLGNKCMNMKKDDKVVDLVSYENNSENLKNL 102

Query: 661 -VAVVGENRKLLIFSIDQIPEM-SRGKG 686
            +  + +N    +  +D+I     RGKG
Sbjct: 103 KIIFLSKNGHGKMIGVDEIKVQKKRGKG 130


>gi|173000|gb|AAB59328.1| topoisomerase II [Saccharomyces cerevisiae]
          Length = 166

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 23/185 (12%)

Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223
           EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E++  +  G
Sbjct: 3   EPEWYLPILPMILVNGAEGIGTGRSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG 60

Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283
                      + E I          + +  R        G   + +TE+P +   S + 
Sbjct: 61  --------WTGTIEEIEPL------PYIIYGRIE----QIGDNVLEITELPARTWTSTIK 102

Query: 284 EK--IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           E   +      K  P ++D+ ++   D    +   +            +    + +   L
Sbjct: 103 EYLLLGLSGNDKIKPWIKDMEEQHD-DNIKFIITLSPEEMAKTRKIGFYERFKLISPISL 161

Query: 342 NMNVL 346
              V 
Sbjct: 162 MNMVA 166


>gi|23345305|gb|AAN28728.1| DNA gyrase A [Streptococcus mutans]
          Length = 95

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 631 IIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R GK      +   +     LV     + + ++ +   ++  S+  I +  R   
Sbjct: 1   YPTKGRGGKGIKTANITAKNGPLAGLVTVNDDEDIMIITDTGVIIRTSVADISQTGRSAM 60

Query: 686 GVRLQSYKDGGISDVICFKICE 707
           GV++    +            E
Sbjct: 61  GVKVMRLDENAKIVTFALVKSE 82



 Score = 44.8 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 6/76 (7%)

Query: 679 PEMSRG-KGVRL--QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           P   RG KG++    + K+G ++ ++     E +  I           +        R  
Sbjct: 2   PTKGRGGKGIKTANITAKNGPLAGLVTVNDDEDIMIITDT--GVIIRTSVADISQTGRSA 59

Query: 736 VGSLVPKGFPRSGKFL 751
           +G  V +    + K +
Sbjct: 60  MGVKVMRLDE-NAKIV 74


>gi|38569887|gb|AAR24461.1| DNA gyrase A [Streptococcus mutans]
          Length = 95

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 631 IIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R GK      +   +     LV     + + ++ +   ++  S+  I +  R   
Sbjct: 1   YPTKGRGGKGIKTANITAKNGPLAGLVTVNDDEDIMIITDTGVIIRTSVADISQTGRSAM 60

Query: 686 GVRLQSYKDGGISDVICFKICE 707
           GV++    +            E
Sbjct: 61  GVKVMRLDENAKIVTFALVKSE 82



 Score = 44.8 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 6/76 (7%)

Query: 679 PEMSRG-KGVRL--QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           P   RG KG++    + K+G ++ ++     E +  I           +        R  
Sbjct: 2   PTKGRGGKGIKTANITAKNGPLAGLVTVNDDEDIMIITDT--GVIIRTSVADISQTGRSA 59

Query: 736 VGSLVPKGFPRSGKFL 751
           +G  V +    + K +
Sbjct: 60  MGVKVMRLDE-NAKIV 74


>gi|253568270|ref|ZP_04845681.1| DNA gyrase [Bacteroides sp. 1_1_6]
 gi|251842343|gb|EES70423.1| DNA gyrase [Bacteroides sp. 1_1_6]
          Length = 113

 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 649 KMKLVV-KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD-GGISDVICFKI 705
           K+  +      + + ++ ++   +   +  +  M R  +GVRL + +        +C  +
Sbjct: 9   KLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVM 68

Query: 706 CEGLTWIDSAGRSYNRSENDL 726
            E L     A  +     +DL
Sbjct: 69  TESLEDEVPAEEAEGTIVSDL 89



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 4/61 (6%), Positives = 13/61 (21%)

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
            +  +     V    + +    +                 +  R   G  +     R+ +
Sbjct: 1   MNITEKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQ 60

Query: 750 F 750
            
Sbjct: 61  I 61


>gi|224613376|gb|ACN60267.1| DNA topoisomerase 2-alpha [Salmo salar]
          Length = 742

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/425 (11%), Positives = 117/425 (27%), Gaps = 32/425 (7%)

Query: 157 TYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI-SI 214
            Y++    EP  +    P +L NG  GI  G A+ IP+ +++EI      +++  E   +
Sbjct: 7   NYDDNQRVEPEWYIPIIPTVLVNGADGIGTGWASRIPNFDIREIVNNIHRMLNGEEPLPL 66

Query: 215 EKLLEYIIG--PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
               +   G      T   +     +I++S  +      V+      +       +  TE
Sbjct: 67  LPSYKGFKGTIDQLMTNQYMNNGEVAIIDSTTIEISELPVKTWTQAYKENVLEPMLNGTE 126

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK------NRSLDPDLLM 326
                +   LI    E      +  +  + +E   +       K      + + +  +L 
Sbjct: 127 -----KVQALITDYKEYHTDTAVRFVVKMTEERLREAEAAGLHKVFKLQQSLTCNSMVLF 181

Query: 327 ESIFMLSDME-------TRFPLNMNVLS---MGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           + +  L   E         F L M             +      L        E +    
Sbjct: 182 DHVGSLKKYELVQDILKDFFELRMKYYVLRKDWLAGMLGAESAKLTNQARFILEKIEGTL 241

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL-----TENQVDAI 431
               +   + + +L  +      +         +   +              T    + +
Sbjct: 242 VIENKPKKQLILMLTEMGYDSDPVKAWKEAQEKDRSVEETQDDEEEDKEEDATGPDYNYL 301

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG--KQQWNQIACEIREVKEIFSKS 489
           LN+ +  L K ++ ++  + D  + E   +     +   K+       E+  V+E   ++
Sbjct: 302 LNMPMWYLTKEKKEELCKQRDAKMTELNTLKKKSPADLWKEDLAAFTEELERVEEKDRQN 361

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
            ++   +    +               +    +  + +                      
Sbjct: 362 ANMPVVKGKAVKGKVVKVKRETTPQGRRVIPRITSTMKAEATRKAVVMKGKKGEEVVMKM 421

Query: 550 SLKIA 554
                
Sbjct: 422 EFDAH 426


>gi|1078799|pir||S47661 topoisomerase II - malaria parasite (Plasmodium falciparum)
          Length = 160

 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 114 GQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDE 149
             G FG+    G  A+A RY   ++      I    D+
Sbjct: 121 PCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDD 158


>gi|37542711|gb|AAL47189.1| gyrase A [Mycobacterium marinum]
          Length = 122

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 9/125 (7%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLL 615
           T D I L +        P            A    +     + I        Y+    L+
Sbjct: 1   THDWICLTTQGRVYRARPTNCPRRTHRAWAARGEPVAFQPEERIAQVIQIKSYEDAPYLV 60

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV---VGENRKLLI 672
           +    G    ++ ++  +N   G   +K+  E+++      + +         ++R  L 
Sbjct: 61  LAPRTG-GEEIQVTDFDSNRSGGIVGIKLRGEDELVGAGMCSSEEDLWWSRRTDSR--LR 117

Query: 673 FSIDQ 677
           FS  +
Sbjct: 118 FSATE 122


>gi|294671325|ref|ZP_06736176.1| hypothetical protein NEIELOOT_03034 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306957|gb|EFE48200.1| hypothetical protein NEIELOOT_03034 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 72

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
            ++     L+   ++QI E  R   GVRL +  +G 
Sbjct: 1   MLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEGE 36


>gi|260204186|ref|ZP_05771677.1| DNA gyrase subunit A [Mycobacterium tuberculosis K85]
          Length = 257

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           R+ +  DG +SD       +    +      Y +     L    KRGG G 
Sbjct: 74  RIIA-ADGDVSDEDLIARED--VVVTITETGYAKRTKTDLYRSQKRGGKGV 121



 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 22/104 (21%), Gaps = 5/104 (4%)

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
            R           ++  +      D V  + E         D      R GKGV+    K
Sbjct: 71  RRTRIIAADGDVSDEDLIAR---EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK 127

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
              I     F        +    +               R   G
Sbjct: 128 QDDIV-AHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 170



 Score = 44.4 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKV-TGDHVAVVGENRKL 670
           ++ ++  G A   +     +  R GK      +  ++ +       T D +       ++
Sbjct: 94  VVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRV 153

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICE 707
                  +PE SR    R Q      +++++ F+  E
Sbjct: 154 YRAKAYDLPEASRTA--RGQ-----HVANLLAFQPEE 183


>gi|213023343|ref|ZP_03337790.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 169

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRR
Sbjct: 1   MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRR 59

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
           EV+ RR+ F ++    R  IL+ L IA  NID II +IR    P  
Sbjct: 60  EVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAE 105


>gi|289573609|ref|ZP_06453836.1| LOW QUALITY PROTEIN: DNA gyrase subunit A [Mycobacterium
           tuberculosis K85]
 gi|289538040|gb|EFD42618.1| LOW QUALITY PROTEIN: DNA gyrase subunit A [Mycobacterium
           tuberculosis K85]
          Length = 252

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           R+ +  DG +SD       +    +      Y +     L    KRGG G 
Sbjct: 74  RIIA-ADGDVSDEDLIARED--VVVTITETGYAKRTKTDLYRSQKRGGKGV 121



 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 22/104 (21%), Gaps = 5/104 (4%)

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
            R           ++  +      D V  + E         D      R GKGV+    K
Sbjct: 71  RRTRIIAADGDVSDEDLIAR---EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK 127

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
              I     F        +    +               R   G
Sbjct: 128 QDDIV-AHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 170



 Score = 44.0 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKV-TGDHVAVVGENRKL 670
           ++ ++  G A   +     +  R GK      +  ++ +       T D +       ++
Sbjct: 94  VVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRV 153

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICE 707
                  +PE SR    R Q      +++++ F+  E
Sbjct: 154 YRAKAYDLPEASRTA--RGQ-----HVANLLAFQPEE 183


>gi|167465536|ref|ZP_02330625.1| DNA gyrase subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 86

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 637 KGKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
           KG   L V   +   + L V    + + ++  +  ++  S+  I  M R  +GVRL + +
Sbjct: 2   KGIKTLNVTSKNGPVVGLKVVEEDEDLMIITASGTVIRTSMSGISIMGRNTQGVRLINTR 61

Query: 694 DGGISDVIC 702
           +      + 
Sbjct: 62  EDDEVATVT 70



 Score = 41.3 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVKV 656
           +V   V +    L+++++ G       S   I+    +G   +    ++++  V +V
Sbjct: 16  VVGLKVVEEDEDLMIITASGTVIRTSMSGISIMGRNTQGVRLINTREDDEVATVTRV 72


>gi|175941429|gb|ACB72669.1| GyrA [Streptomyces sp. Ht 020]
          Length = 179

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 8/57 (14%)

Query: 691 SYKDGGISDVICFK--------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            + D   S ++ F         I E    +  +   Y +           RGG G  
Sbjct: 121 KFGDDRRSALVPFDGDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQNRGGKGVR 177


>gi|7579895|gb|AAB32916.2| type II topoisomerase [Cryptosporidium parvum]
          Length = 45

 Score = 47.5 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 74  KSARIVGEVI--GKLHPHGDQSVYDSLVRLAQPF 105
           K A++ G V      H HG+ S+  + V +AQ F
Sbjct: 10  KVAQLAGYVAEHSAYH-HGESSLQSTNVNMAQNF 42


>gi|12324198|gb|AAG52064.1|AC012679_2 unknown protein; 53481-57666 [Arabidopsis thaliana]
          Length = 522

 Score = 47.5 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/434 (8%), Positives = 114/434 (26%), Gaps = 30/434 (6%)

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           + ++  G W  V+ ++         +E    L     + ++E    ++A  +        
Sbjct: 59  ISDINSGRWDSVLPQVSQLKLPRNKLED---LYEQIVLEMIELRELDTARAILRQTQVMG 115

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR------REV 371
                            + + F  +       +  +   +   +   +           +
Sbjct: 116 VMKQEQAERYLRMEHLLVRSYFDPHEAYGDSTKERKRAQIAQAVAAEVTVVPPSRLMALI 175

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI----IRNEDKPKPVMVSRFSLTENQ 427
                  + Q +                  ++       + +  K      +  +     
Sbjct: 176 GQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVEDTHPNVLTHTIKFGKKSHAECARFSPD 235

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIF 486
              + +  +    ++ +Y       +L  + ++   + +      +     E+       
Sbjct: 236 GQFLASSSVDGFIEVWDYISGKLKKDLQYQADESFMMHDDPVLCIDFSRDSEMLASGSQD 295

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K      R         A    +      ++   ++ ++      +           F+
Sbjct: 296 GKIKIWRIRTGVCIRRFDAHSQGVTSLSFSRDGSQLLSTSFDQTARIHGLKSGKLLKEFR 355

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
              S     HA  T     + T     T+   +  +                +  + +  
Sbjct: 356 GHTS--YVNHAIFTSDGSRIITASSDCTVKVWDSKTTDCLQTFKPPPPLRGTDASVNSIH 413

Query: 607 VYD-STCKLLVVSSKGNAFIVEE-----SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           ++  +T  ++V +   + +I+           +  R+G         + +   V   GD 
Sbjct: 414 LFPKNTEHIVVCNKTSSIYIMTLQGQVVKSFSSGNREG--------GDFVAACVSTKGDW 465

Query: 661 VAVVGENRKLLIFS 674
           +  +GE++KL  F+
Sbjct: 466 IYCIGEDKKLYCFN 479


>gi|175941425|gb|ACB72667.1| GyrA [Streptomyces sp. Bd 205]
          Length = 180

 Score = 47.5 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 8/57 (14%)

Query: 691 SYKDGGISDVICFK--------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            + D   S ++ F         I E    +  +   Y +          KRGG G  
Sbjct: 124 KFGDDRRSKLVPFDGDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKGVR 180


>gi|255018820|ref|ZP_05290946.1| DNA gyrase subunit A [Listeria monocytogenes FSL F2-515]
          Length = 80

 Score = 47.5 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 635 TRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R G   KT         +  +  VTG+  + ++  +  L+ F ID + +  R   GV+L
Sbjct: 1   NRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKL 60

Query: 690 QSYKDGGISDVIC 702
               +   S   C
Sbjct: 61  IRLDEDRKSSHCC 73



 Score = 37.4 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 5/21 (23%), Positives = 10/21 (47%)

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
            RGG+G        ++G  ++
Sbjct: 1   NRGGMGVKTVTITEKNGNLVA 21


>gi|22330602|ref|NP_177513.2| transducin family protein / WD-40 repeat family protein
           [Arabidopsis thaliana]
 gi|18087515|gb|AAL58892.1|AF462796_1 At1g73720/F25P22_14 [Arabidopsis thaliana]
 gi|20857033|gb|AAM26696.1| At1g73720/F25P22_14 [Arabidopsis thaliana]
 gi|332197380|gb|AEE35501.1| WD40 repeat-containing protein SMU1 [Arabidopsis thaliana]
          Length = 511

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/434 (8%), Positives = 114/434 (26%), Gaps = 30/434 (6%)

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           + ++  G W  V+ ++         +E    L     + ++E    ++A  +        
Sbjct: 48  ISDINSGRWDSVLPQVSQLKLPRNKLED---LYEQIVLEMIELRELDTARAILRQTQVMG 104

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR------REV 371
                            + + F  +       +  +   +   +   +           +
Sbjct: 105 VMKQEQAERYLRMEHLLVRSYFDPHEAYGDSTKERKRAQIAQAVAAEVTVVPPSRLMALI 164

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI----IRNEDKPKPVMVSRFSLTENQ 427
                  + Q +                  ++       + +  K      +  +     
Sbjct: 165 GQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVEDTHPNVLTHTIKFGKKSHAECARFSPD 224

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIF 486
              + +  +    ++ +Y       +L  + ++   + +      +     E+       
Sbjct: 225 GQFLASSSVDGFIEVWDYISGKLKKDLQYQADESFMMHDDPVLCIDFSRDSEMLASGSQD 284

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K      R         A    +      ++   ++ ++      +           F+
Sbjct: 285 GKIKIWRIRTGVCIRRFDAHSQGVTSLSFSRDGSQLLSTSFDQTARIHGLKSGKLLKEFR 344

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
              S     HA  T     + T     T+   +  +                +  + +  
Sbjct: 345 GHTS--YVNHAIFTSDGSRIITASSDCTVKVWDSKTTDCLQTFKPPPPLRGTDASVNSIH 402

Query: 607 VYD-STCKLLVVSSKGNAFIVEE-----SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           ++  +T  ++V +   + +I+           +  R+G         + +   V   GD 
Sbjct: 403 LFPKNTEHIVVCNKTSSIYIMTLQGQVVKSFSSGNREG--------GDFVAACVSTKGDW 454

Query: 661 VAVVGENRKLLIFS 674
           +  +GE++KL  F+
Sbjct: 455 IYCIGEDKKLYCFN 468


>gi|175941435|gb|ACB72672.1| GyrA [Streptomyces sp. Md 063]
          Length = 180

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 11/35 (31%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           I E    +  +   Y +          KRGG G  
Sbjct: 146 IAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKGVR 180


>gi|56807884|ref|ZP_00365716.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Streptococcus pyogenes M49 591]
          Length = 73

 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 6/54 (11%), Positives = 17/54 (31%), Gaps = 1/54 (1%)

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
           + + V+     ++  ++  I +  R   GV++                 E  + 
Sbjct: 3   EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPEDSSI 56


>gi|327342912|dbj|BAK09288.1| DNA gyrase subunit A [Streptococcus constellatus subsp.
           constellatus]
          Length = 78

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 639 KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           KT         +  ++ V GD  + ++     ++  ++  I +  R   GV++     G 
Sbjct: 1   KTANITEKNGPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKGA 60

Query: 697 ISDVICFKICEGL 709
                     E  
Sbjct: 61  QIVTFTSVEAENE 73



 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            + K+G ++ ++     E L  I +         N        R  +G  V +
Sbjct: 5   ITEKNGPLAGLMAVNGDEDLMIITNT--GVIIRTNVANISQTGRATLGVKVMR 55


>gi|29691140|gb|AAO91622.1| DNA gyrase A subunit [Pectobacterium carotovorum subsp. odoriferum]
          Length = 183

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+V  T D +    
Sbjct: 105 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFS 164

Query: 666 ENRKLLIFSIDQIPEMSRG 684
              +L    + Q+PE SRG
Sbjct: 165 SRGRLYWMKVYQLPEASRG 183


>gi|29691138|gb|AAO91621.1| DNA gyrase A subunit [Pectobacterium wasabiae]
          Length = 183

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+V  T D +    
Sbjct: 105 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFS 164

Query: 666 ENRKLLIFSIDQIPEMSRG 684
              +L    + Q+PE SRG
Sbjct: 165 SRGRLYWMKVYQLPEASRG 183


>gi|29691132|gb|AAO91618.1| DNA gyrase A subunit [Pectobacterium betavasculorum]
          Length = 183

 Score = 46.7 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+V  T D +    
Sbjct: 105 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFS 164

Query: 666 ENRKLLIFSIDQIPEMSRG 684
              +L    + Q+PE SRG
Sbjct: 165 SRGRLYWMKVYQLPEASRG 183


>gi|29691134|gb|AAO91619.1| DNA gyrase A subunit [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 183

 Score = 46.7 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+V  T D +    
Sbjct: 105 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFS 164

Query: 666 ENRKLLIFSIDQIPEMSRG 684
              +L    + Q+PE SRG
Sbjct: 165 SRGRLYWMKVYQLPEASRG 183


>gi|29691136|gb|AAO91620.1| DNA gyrase A subunit [Pectobacterium atrosepticum]
          Length = 183

 Score = 46.7 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+V  T D +    
Sbjct: 105 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFS 164

Query: 666 ENRKLLIFSIDQIPEMSRG 684
              +L    + Q+PE SRG
Sbjct: 165 SRGRLYWMKVYQLPEASRG 183


>gi|175941431|gb|ACB72670.1| GyrA [Streptomyces sp. Md 005]
 gi|175941433|gb|ACB72671.1| GyrA [Streptomyces sp. Md 039]
          Length = 180

 Score = 46.3 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 11/35 (31%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           I +    +  +   Y +          KRGG G  
Sbjct: 146 IAKEDIVLTISRSGYVKRTKTDDYRSQKRGGKGVR 180


>gi|75763034|ref|ZP_00742824.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489481|gb|EAO52907.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 125

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 7/61 (11%), Positives = 16/61 (26%)

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           ++  + K+            +    I    R   +           R   G ++ K   R
Sbjct: 1   MKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKR 60

Query: 747 S 747
           +
Sbjct: 61  N 61



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 38/116 (32%), Gaps = 5/116 (4%)

Query: 640 TFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGK-G-VRLQSYKDG 695
             + +  ++ +     + G  D + +V +   +      +I + +R K G V  +  K  
Sbjct: 2   KAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRN 61

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               V    + +         ++     +        R   GSLV      +G+ +
Sbjct: 62  PYRIVGIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVND-TGEVV 116


>gi|167949299|ref|ZP_02536373.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 41

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R      +DL  + G+RG  G+ +P+GF R  + 
Sbjct: 3   GKRHITLKSSDLDSYQGERGRRGNKLPRGFQRVDRI 38


>gi|29691130|gb|AAO91617.1| DNA gyrase A subunit [Erwinia amylovora]
          Length = 183

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  KGK+  ++  E+   +L+V  T D +    
Sbjct: 105 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 164

Query: 666 ENRKLLIFSIDQIPEMSRG 684
              +L    + Q+PE +RG
Sbjct: 165 SRGRLYWMKVYQLPEANRG 183


>gi|29691128|gb|AAO91616.1| DNA gyrase A subunit [Erwinia pyrifoliae]
          Length = 183

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  KGK+  ++  E+   +L+V  T D +    
Sbjct: 105 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 164

Query: 666 ENRKLLIFSIDQIPEMSRG 684
              +L    + Q+PE +RG
Sbjct: 165 SRGRLYWMKVYQLPEANRG 183


>gi|327342909|dbj|BAK09286.1| DNA gyrase subunit A [Streptococcus intermedius]
          Length = 79

 Score = 45.9 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 639 KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           KT         +  ++ V GD  + ++     ++  ++  I +  R   GV++     G 
Sbjct: 1   KTANITEKNGPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKGA 60

Query: 697 ISDVICFKICEGL 709
                     +  
Sbjct: 61  QIVTFTSVTADNE 73



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            + K+G ++ ++     E L  I +         N        R  +G  V +
Sbjct: 5   ITEKNGPLAGLMAVNGDEDLMIITNT--GVIIRTNVANISQTGRATLGVKVMR 55


>gi|327342918|dbj|BAK09292.1| DNA gyrase subunit A [Streptococcus anginosus SK52]
          Length = 79

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 639 KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           KT         +  ++ V GD  + ++     ++  ++  I +  R   GV++     G 
Sbjct: 1   KTANITEKNGPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKGA 60

Query: 697 ISDVICFKICEGL 709
                     +  
Sbjct: 61  QIVTFTSVAADSE 73



 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            + K+G ++ ++     E L  I +         N        R  +G  V +
Sbjct: 5   ITEKNGPLAGLMAVNGDEDLMIITNT--GVIIRTNVANISQTGRATLGVKVMR 55


>gi|209520359|ref|ZP_03269123.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding [Burkholderia
           sp. H160]
 gi|209499191|gb|EDZ99282.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding [Burkholderia
           sp. H160]
          Length = 327

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSI 675
            GN F      ++ + R G  F+  ++ + + L V+      GD +A     ++L+ F +
Sbjct: 237 SGNRFFNTIGNLVHDPRAGLLFIDFANGDLLYLAVQAEIVWDGDELAAFAGAQRLVRFHV 296

Query: 676 DQIPEMSRGKG 686
           +++    R +G
Sbjct: 297 NEVR---RSRG 304


>gi|213024348|ref|ZP_03338795.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 78

 Score = 45.5 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 249 GFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +
Sbjct: 1   KVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDK 60

Query: 308 DVRIVLFPKNRS 319
           D   ++    R 
Sbjct: 61  DGMRIVIEVKRD 72


>gi|327342921|dbj|BAK09294.1| DNA gyrase subunit A [Streptococcus anginosus]
          Length = 78

 Score = 45.5 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  ++ V GD  + ++     ++  ++  I +  R   GV++     G           +
Sbjct: 11  LAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKGAQIVTFTSVAAD 70

Query: 708 GL 709
             
Sbjct: 71  SE 72



 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            + K+G ++ ++     E L  I +         N        R  +G  V +
Sbjct: 4   ITEKNGPLAGLMAVNGDEDLMIITNT--GVIIRTNVANISQTGRATLGVKVMR 54


>gi|169836390|ref|ZP_02869578.1| hypothetical protein cdivTM_04680 [candidate division TM7
           single-cell isolate TM7a]
          Length = 34

 Score = 45.5 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 9/27 (33%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVG 737
           ++      Y +        L  RGG G
Sbjct: 3   FLTITEEGYGKRTKLSEYRLQSRGGKG 29


>gi|77406476|ref|ZP_00783531.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
 gi|77174911|gb|EAO77725.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
          Length = 30

 Score = 45.5 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKER 41
          + ++N+  V+L   ++  ++ YA+S I  R
Sbjct: 1  MQDKNLVDVNLTSEMKTSFIDYAMSVIVAR 30


>gi|218662255|ref|ZP_03518185.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 125

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 649 KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDV 700
           ++     V  GD + +V +  +L+   +  I   SR  KGV + S  KD  +  V
Sbjct: 26  ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSV 80



 Score = 44.8 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 4/79 (5%)

Query: 677 QIPEMSRG-KGVRLQSYKDGGISD--VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
                 RG KG+R       G     V  F + +G   +  +              +  R
Sbjct: 2   DFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASR 61

Query: 734 GGVGSLVPKGFPRSGKFLS 752
              G        +  K +S
Sbjct: 62  ATKGV-TIFSTAKDEKVVS 79


>gi|145629329|ref|ZP_01785128.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978832|gb|EDJ88555.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 80

 Score = 44.8 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           K+    +V   D + ++ +   L+   + ++  + R  +GVRL    D      +
Sbjct: 7   KVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSL 61


>gi|297839239|ref|XP_002887501.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333342|gb|EFH63760.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 512

 Score = 44.8 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 35/435 (8%), Positives = 114/435 (26%), Gaps = 31/435 (7%)

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           + ++  G W  V+ ++         +E    L     + ++E    ++A  +        
Sbjct: 48  ISDINSGRWDSVLPQVSQLKLPRNKLED---LYEQIVLEMIELRELDTARAILRQTQVMG 104

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR------REV 371
                            + + F  +       +  +   +   +   +           +
Sbjct: 105 VMKQEQPERYLRMEHLLVRSYFDPHEAYGDSTKERKRAQIAQAVAAEVTVVPPSRLMALI 164

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI----IRNEDKPKPVMVSRFSLTENQ 427
                  + Q +                  ++       + +  K      +  +     
Sbjct: 165 GQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVEDTHPNALTHTIKFGKKSHAECARFSPD 224

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIF 486
              + +  +    ++ +Y       +L  + ++   + +      +     E+       
Sbjct: 225 GQFLASSSVDGFIEVWDYISGKLKKDLQYQADETFMMHDDPVLCIDFSRDSELLASGSQD 284

Query: 487 SKSTDLGRRRTT-FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
            K      R          A    +      ++   ++ ++      +           F
Sbjct: 285 GKIKIWRIRTGLCIRRFEHAHSQGVTSLSFSRDGSQLLSTSFDQTARIHGLKSGKLLKEF 344

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           +   S     +A  T     + T     T+   +  +                +  + + 
Sbjct: 345 RGHTS--YVNNAIFTSDGSRIITASSDCTVKVWDSKTTDCLQTFKPPPPLRQSDASVNSI 402

Query: 606 FVYD-STCKLLVVSSKGNAFIVEE-----SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            ++  +T  ++V +   + +I+           +  R+G         + +   V   GD
Sbjct: 403 HLFPKNTEHIVVCNKTSSIYIMTLQGQVVKSFSSGNREG--------GDFVAACVSTKGD 454

Query: 660 HVAVVGENRKLLIFS 674
            +  +GE++KL  F+
Sbjct: 455 WIYCIGEDKKLYCFN 469


>gi|168742738|emb|CAM84565.1| putative DNA gyrase subunit A [Haemophilus parainfluenzae]
          Length = 19

 Score = 44.8 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 16/19 (84%)

Query: 88  PHGDQSVYDSLVRLAQPFV 106
           PHGD +VY ++VR+AQPF 
Sbjct: 1   PHGDFAVYYTIVRMAQPFS 19


>gi|532281|dbj|BAA05032.1| DNA gyrase subunit A [Mycoplasma capricolum subsp. capricolum
          ATCC 27343]
          Length = 37

 Score = 44.8 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 6  ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLR 47
          +S+     +  +    L   L  R+  YA   I+ERA+PD+R
Sbjct: 1  MSD-----KSEIILYPLEELLGNRFSRYAKYIIQERALPDVR 37


>gi|169787188|gb|ACA80033.1| GyrA [Pantoea stewartii]
          Length = 163

 Score = 44.4 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  +   E      D+N    I           ++ +S +G       SE  A  R
Sbjct: 69  VREQFGDKRRTEITANSADINLEDLIT------QEDVVVTLSHQGYVKYQPLSEYEAQRR 122

Query: 637 --KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
             KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 123 GGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|169787154|gb|ACA80016.1| GyrA [Brenneria rubrifaciens]
 gi|169787160|gb|ACA80019.1| GyrA [Pectobacterium carotovorum subsp. carotovorum]
 gi|169787162|gb|ACA80020.1| GyrA [Pectobacterium carotovorum subsp. carotovorum]
 gi|169787178|gb|ACA80028.1| GyrA [Pectobacterium atrosepticum]
 gi|169787180|gb|ACA80029.1| GyrA [Pectobacterium carotovorum subsp. odoriferum]
 gi|169787182|gb|ACA80030.1| GyrA [Erwinia chrysanthemi]
 gi|169787184|gb|ACA80031.1| GyrA [Erwinia chrysanthemi]
          Length = 163

 Score = 44.4 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  +   E      D+N    I           ++ +S +G       SE  A  R
Sbjct: 69  VREQFGDKRRTEITANSADINLEDLIT------QEDVVVTLSHQGYVKYQPLSEYEAQRR 122

Query: 637 --KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
             KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 123 GGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|169787176|gb|ACA80027.1| GyrA [Pectobacterium atrosepticum SCRI1043]
          Length = 163

 Score = 44.4 bits (103), Expect = 0.081,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  +   E      D+N    I           ++ +S +G       SE  A  R
Sbjct: 69  VREQFGDKRRTEITANSADINLEDLIT------QEDVVVTLSHQGYVKYQPLSEYEAQRR 122

Query: 637 --KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
             KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 123 GGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|169787156|gb|ACA80017.1| GyrA [Pectobacterium cypripedii]
          Length = 163

 Score = 44.4 bits (103), Expect = 0.082,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  +   E      D+N    I           ++ +S +G       SE  A  R
Sbjct: 69  VREQFGDKRRTEITANSADINLEDLIT------QEDVVVTLSHQGYVKYQPLSEYEAQRR 122

Query: 637 --KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
             KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 123 GGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|169787170|gb|ACA80024.1| GyrA [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 163

 Score = 44.0 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 9/97 (9%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                      E      D+N    I           ++ +S +G       SE  A  R
Sbjct: 69  VDEQFGDERRTEITANSADINLEDLIT------QEDVVVTLSHQGYVKYQPLSEYEAQRR 122

Query: 637 --KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
             KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 123 GGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|297845356|ref|XP_002890559.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336401|gb|EFH66818.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 59

 Score = 44.0 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYI-IGPDFPTGGIIV 233
           MAT+IP HN+ E+     ALI NPE ++++LLEY+   PDFPTGG I+
Sbjct: 1   MATNIPPHNLGELVNVLCALIHNPEATLQELLEYMPPAPDFPTGGTIM 48


>gi|169787164|gb|ACA80021.1| GyrA [Pectobacterium betavasculorum]
          Length = 163

 Score = 44.0 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  +   E      D+N    I           ++ +S +G       SE  A  R
Sbjct: 69  VREQFGDKRRTEITANSADINLEDLIT------QEDVVVTLSHQGYVKYQPLSEYEAQRR 122

Query: 637 --KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
             KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 123 GGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|169787136|gb|ACA80007.1| GyrA [Erwinia mallotivora]
          Length = 163

 Score = 44.0 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 100 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|295699492|ref|YP_003607385.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
           [Burkholderia sp. CCGE1002]
 gi|295438705|gb|ADG17874.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
           [Burkholderia sp. CCGE1002]
          Length = 327

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSI 675
            GN F      ++ + R G   +  ++ + + L V+      GD +A     ++L+ F +
Sbjct: 237 SGNRFFNTIGNLVHDPRAGLLVIDFATGDLLYLAVRAEIIWDGDELAAFAGAQRLVRFHV 296

Query: 676 DQIPEMSRGKG 686
            ++    R +G
Sbjct: 297 GEVR---RSRG 304


>gi|169787138|gb|ACA80008.1| GyrA [Erwinia rhapontici]
          Length = 163

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 100 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|291228320|ref|XP_002734133.1| PREDICTED: zinc finger protein 45-like [Saccoglossus kowalevskii]
          Length = 495

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/389 (6%), Positives = 86/389 (22%), Gaps = 11/389 (2%)

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            +++   +     + +            I               +        +   L +
Sbjct: 79  KQTHTNEKPYKCEQCKMSFIISNSLKQHIRTHTNEKPYHCQECKKSFT-----QSSTLKQ 133

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            ++  + E        K        L + +   ++ +                    +  
Sbjct: 134 HMQTHTNEKPYHCQQCKKSFTQSSTLKQHMRTHTNEKPYHCQECKKSFTQSSTLKQHMQT 193

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-MV 418
              E   H +E     +         +    +                  +   K     
Sbjct: 194 HTNEKPYHCQECEKGFTRSSTLKQHMQTHTNEKPYHCQQCEKSFTRSSTLKQHMKTHTNE 253

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             +   + +     +  L+   +    +             +  +L    +   N+    
Sbjct: 254 KPYHCQDCEKSFSHSSTLKQHMRTHTNEKPYHCQECEKSFTQSSTLKQHMQTHTNKKLYH 313

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-----KEPITVVISNRGWIRSL 533
            ++ K+ F +S+ L +   T            +++ I+     +   T            
Sbjct: 314 CQQCKKSFIQSSTLKQHMQTHTNEKPYHCQQCKKSFIQSSHLKQHIRTHTNKKPFQENCF 373

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              ++    L                ++   +                       + + L
Sbjct: 374 SYSNIKKIHLVEHHTKLGNFTCIPVDSNNPNVAVIPNSVSQFYCHQCECIYSQLTSQRHL 433

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           + ++  ++ +  +   +  K L V+  G 
Sbjct: 434 LIIHRGEEYIYRWETMNDKKQLTVTRNGY 462


>gi|69251027|ref|ZP_00605192.1| DNA topoisomerase IV, A subunit [Enterococcus faecium DO]
 gi|68193895|gb|EAN08478.1| DNA topoisomerase IV, A subunit [Enterococcus faecium DO]
          Length = 36

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDL 46
          + V+ ++L   + +R+  Y+   I+ERA+PD+
Sbjct: 5  QEVQELTLEEVMGDRFGRYSKYIIQERALPDI 36


>gi|327342915|dbj|BAK09290.1| DNA gyrase subunit A [Streptococcus constellatus subsp. pharyngis]
          Length = 78

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 639 KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           KT         +  ++ V GD  + ++     ++  ++  I +  R   GV++     G 
Sbjct: 1   KTANITEKNGPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTRRATLGVKVMRLDKGA 60

Query: 697 ISDVICFKICEGL 709
                     E  
Sbjct: 61  QIVTFTSVEAENE 73



 Score = 37.8 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            + K+G ++ ++     E L  I +         N       +R  +G  V +
Sbjct: 5   ITEKNGPLAGLMAVNGDEDLMIITNT--GVIIRTNVANISQTRRATLGVKVMR 55


>gi|321462425|gb|EFX73448.1| hypothetical protein DAPPUDRAFT_325241 [Daphnia pulex]
          Length = 78

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 94  VYDSLVRLAQPF--VQRYPLISGQGNFGNID--GDSAAAYR 130
           +  ++V +AQ F       L+   G FG     G  AA++R
Sbjct: 33  LMRTIVCMAQDFVGSNNVNLLIRNGQFGTRHQVGKYAASHR 73


>gi|169787140|gb|ACA80009.1| GyrA [Erwinia psidii]
 gi|169787142|gb|ACA80010.1| GyrA [Erwinia psidii]
          Length = 163

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  KGK+  ++  E+   +L+V  T D +    
Sbjct: 95  NEEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 154

Query: 666 ENRKL 670
              +L
Sbjct: 155 SRGRL 159


>gi|18308990|ref|NP_560924.1| hypothetical protein CPE0008 [Clostridium perfringens str. 13]
 gi|18143665|dbj|BAB79714.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 83

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFK-----ICEGLTWID 713
           + ++      +  ++  I   SR   GV+L    +D  +  +           E +T +D
Sbjct: 3   LCIINSQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEITLLD 62

Query: 714 SAG 716
            + 
Sbjct: 63  ESE 65


>gi|213025398|ref|ZP_03339845.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 98

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD----VICF 703
           +   V+V   D + ++ +   L+   + +I  + R  +GV L    +         V   
Sbjct: 8   VVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEP 67

Query: 704 KICEGLTWIDSA 715
              E L  ID +
Sbjct: 68  VDDEELDAIDGS 79


>gi|320170777|gb|EFW47676.1| WD repeat-containing protein SAZD [Capsaspora owczarzaki ATCC
           30864]
          Length = 1038

 Score = 42.5 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 56/175 (32%), Gaps = 21/175 (12%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGH---GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
            +    +T G  +     + +        G+ +         ++IV AF   +T  + VV
Sbjct: 297 QQQQPSTTAGPVFVTAGADGVVRMWDLSTGKPVHSRKLDGPKREIVDAFASPATSSIFVV 356

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSI 675
           +   N F ++++ +       K    V   +++  +  +  D  HV +   + +L  F +
Sbjct: 357 TDDQNIFQLDDTTLEVK----KQI--VGQNDEIIDLRFIGDDDSHVVMATNSEQLRTFDL 410

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
                              G    V+C  +      + SAG+            L
Sbjct: 411 ATF----------GARLLYGHTDIVLCLDVSNDGLLLVSAGKDNTVRAWQSEDRL 455


>gi|169787132|gb|ACA80005.1| GyrA [Erwinia amylovora]
          Length = 155

 Score = 42.5 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  KGK+  ++  E+   +L+V  T D +    
Sbjct: 91  NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 150

Query: 666 ENRKL 670
              +L
Sbjct: 151 SRGRL 155


>gi|224814614|gb|ACN65505.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 17

 Score = 42.5 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 82 VIGKLHPHGDQSVYDSL 98
           +G  HPHGD S+YD+L
Sbjct: 1  TMGNYHPHGDLSIYDTL 17


>gi|169787152|gb|ACA80015.1| GyrA [Brenneria alni]
          Length = 163

 Score = 42.1 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+V  T D +    
Sbjct: 95  NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFS 154

Query: 666 ENRKL 670
              +L
Sbjct: 155 SRGRL 159


>gi|169787166|gb|ACA80022.1| GyrA [Pectobacterium betavasculorum]
          Length = 163

 Score = 42.1 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+V  T D +    
Sbjct: 95  NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFS 154

Query: 666 ENRKL 670
              +L
Sbjct: 155 SRGRL 159


>gi|169787168|gb|ACA80023.1| GyrA [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 163

 Score = 42.1 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+V  T D +    
Sbjct: 95  NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFS 154

Query: 666 ENRKL 670
              +L
Sbjct: 155 SRGRL 159


>gi|169787192|gb|ACA80035.1| GyrA [Pantoea ananatis]
          Length = 163

 Score = 41.7 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  KGK+  ++  E+   +L+V  T D +    
Sbjct: 95  NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 154

Query: 666 ENRKL 670
              +L
Sbjct: 155 SRGRL 159


>gi|169787194|gb|ACA80036.1| GyrA [Pantoea ananatis]
          Length = 163

 Score = 41.7 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  KGK+  ++  E+   +L+V  T D +    
Sbjct: 95  NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 154

Query: 666 ENRKL 670
              +L
Sbjct: 155 SRGRL 159


>gi|169787172|gb|ACA80025.1| GyrA [Pectobacterium wasabiae WPP163]
          Length = 163

 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+V  T D +    
Sbjct: 95  NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFS 154

Query: 666 ENRKL 670
              +L
Sbjct: 155 SRGRL 159


>gi|169787190|gb|ACA80034.1| GyrA [Pantoea stewartii]
          Length = 163

 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T D +    
Sbjct: 95  NQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 154

Query: 666 ENRKL 670
              +L
Sbjct: 155 SRGRL 159


>gi|169787174|gb|ACA80026.1| GyrA [Pectobacterium wasabiae]
          Length = 163

 Score = 41.7 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       SE  A  R  +GK+  ++  E+   +L+V  T D +    
Sbjct: 95  NQEDVVVTLSHQGYVKYQPLSEYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFS 154

Query: 666 ENRKL 670
              +L
Sbjct: 155 SRGRL 159


>gi|224814616|gb|ACN65506.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 17

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 82 VIGKLHPHGDQSVYDSL 98
           +G  HPHGD S+YD+L
Sbjct: 1  TMGNYHPHGDASMYDTL 17


>gi|169787144|gb|ACA80011.1| GyrA [Brenneria quercina]
 gi|169787146|gb|ACA80012.1| GyrA [Brenneria quercina]
 gi|169787148|gb|ACA80013.1| GyrA [Brenneria nigrifluens]
          Length = 163

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       ++  A  R  KGK+  ++  E+   +L+V  T D +    
Sbjct: 95  NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 154

Query: 666 ENRKL 670
              +L
Sbjct: 155 SRGRL 159


>gi|213419135|ref|ZP_03352201.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 62

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +    I    R       +L   +G+RG  G+ + +G  R  + 
Sbjct: 1   MLPPQSTLTIHVGKRKIKLRPEELQKVVGERGRRGT-LMRGLQRIDRI 47


>gi|242095826|ref|XP_002438403.1| hypothetical protein SORBIDRAFT_10g016452 [Sorghum bicolor]
 gi|241916626|gb|EER89770.1| hypothetical protein SORBIDRAFT_10g016452 [Sorghum bicolor]
          Length = 371

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 9/196 (4%)

Query: 170 SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTG 229
           +  P +L NG  GI  G +T IP +N ++I    L L      ++E++  +         
Sbjct: 3   ANLPMILVNGAEGIGTGWSTKIPCYNPKDIVH-NLKLKIQGSETLEEMKPWFR------- 54

Query: 230 GIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL 289
                      ++ +  + G    A   ++ V + +  I    +   ++      K    
Sbjct: 55  -HFHGEVSVKNKTTKTKKSGVTYTASGIIKVVDKTTLKISELPVKISMENYERKLKTFMD 113

Query: 290 IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
              K I   E  R  +  ++ I L   + +L     ++         +    NM++L   
Sbjct: 114 GEDKFIKSYEKKRGGNDVEIMIHLHENSENLVQANEVDLQRKFELRTSMGTSNMHLLDSN 173

Query: 350 RVPQVMPLDGILKEWL 365
            + +       +   +
Sbjct: 174 GIIKKNDSPEQIIVNM 189


>gi|327402260|ref|YP_004343098.1| von Willebrand factor type A [Fluviicola taffensis DSM 16823]
 gi|327317768|gb|AEA42260.1| von Willebrand factor type A [Fluviicola taffensis DSM 16823]
          Length = 473

 Score = 41.3 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 9/115 (7%)

Query: 643 KVSSEEKMKLVVKVTGDHVA---VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
           K+   + M +V       V      G N++ L  SI  +       G +      G    
Sbjct: 322 KLRPNDDMGMVTYANTADVFQAPTSGSNKESLKSSITSLKPSGMTAGGKGIKL--GYKEV 379

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG----SLVPKGFPRSGKF 750
           +  +   +    I     ++N+  +D    + K    G     L  +   R  K 
Sbjct: 380 MKNYDPAKANMVIIITDGAFNKDSDDYQKTVQKYAKKGVVFSVLGIETRERDAKL 434


>gi|169787134|gb|ACA80006.1| GyrA [Erwinia mallotivora]
          Length = 163

 Score = 41.3 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T D +       +L
Sbjct: 100 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 159


>gi|153004647|ref|YP_001378972.1| peptidyl-dipeptidase A [Anaeromyxobacter sp. Fw109-5]
 gi|152028220|gb|ABS25988.1| Peptidyl-dipeptidase A [Anaeromyxobacter sp. Fw109-5]
          Length = 622

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 10/57 (17%)

Query: 100 RL-AQPFVQRYPLISGQGNF---GNIDGDSAAAYR--YTEARMTQVAELILQGVDED 150
            + AQ +   YPL+     F   G++D D AA  R  Y  ARM ++ E     +  +
Sbjct: 287 NMWAQDWSNLYPLVEP---FKGVGSLDVD-AALKRQKYDAARMVKLGEAFFTSLGLE 339


>gi|169787186|gb|ACA80032.1| GyrA [Pantoea agglomerans]
          Length = 163

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       ++  A  R  KGK+  ++  E+   +L+V  T D +    
Sbjct: 95  NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 154

Query: 666 ENRKL 670
              +L
Sbjct: 155 SRGRL 159


>gi|254255005|ref|ZP_04948322.1| Flavodoxin reductase [Burkholderia dolosa AUO158]
 gi|124899650|gb|EAY71493.1| Flavodoxin reductase [Burkholderia dolosa AUO158]
          Length = 735

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSI 675
            GN F      +  + R G  F+   S + + +         G  VA     ++++ F +
Sbjct: 276 SGNRFFNTLGNLQRDPRAGLLFIDFDSGDLLYVAAHAEIVWDGPLVAAFDGAQRVVRFHV 335

Query: 676 DQIPEMSRGKGV 687
            ++    R +GV
Sbjct: 336 REVR---RTRGV 344


>gi|169842286|ref|ZP_02875391.1| hypothetical protein cdivTM_34289 [candidate division TM7
           single-cell isolate TM7a]
          Length = 25

 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 16/25 (64%)

Query: 136 MTQVAELILQGVDEDAVDFRDTYNE 160
           M ++ E +L  + +D +D+R  ++E
Sbjct: 1   MAKITEELLADIGKDTIDYRKNFDE 25


>gi|169787158|gb|ACA80018.1| GyrA [Pectobacterium cypripedii]
          Length = 163

 Score = 40.9 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       +E  A  R  KGK+  ++  E+   +L+V  T D +    
Sbjct: 95  NQEDVVVTLSHQGYVKYQPLTEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 154

Query: 666 ENRKL 670
              +L
Sbjct: 155 SRGRL 159


>gi|317419409|emb|CBN81446.1| NHL repeat-containing protein 2 [Dicentrarchus labrax]
          Length = 719

 Score = 40.9 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 29/120 (24%)

Query: 638 GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI---PEMSRGKGVRLQSYKD 694
           GK  +   S EK   +       + ++    +LL      +   PE  R         +D
Sbjct: 222 GKVAI--DSSEKRLAIADTGHHRILLLSSTGQLLH-----VIGGPESGR---------RD 265

Query: 695 GGISDVICFKICEGLTW------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           G +S+   F   +G+        +        R  + L G +    GVG    +G  + G
Sbjct: 266 GDLSEA-SFNSPQGVAIKGDTVYVADTENHLIRKIDLLEGRVSTLAGVG---IQGTDKDG 321


>gi|118394410|ref|XP_001029577.1| hypothetical protein TTHERM_01422370 [Tetrahymena thermophila]
 gi|89283820|gb|EAR81914.1| hypothetical protein TTHERM_01422370 [Tetrahymena thermophila SB210]
          Length = 2408

 Score = 40.9 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 41/426 (9%), Positives = 121/426 (28%), Gaps = 22/426 (5%)

Query: 265  SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
               + +     + QKS  +    E I  +    +     ++  D   ++      +D  +
Sbjct: 1263 FQSVAMHMFIQKGQKSNFLSTTREQIKFQPREEVSLFLQQNKIDEDEIIKKLINYVDSRV 1322

Query: 325  LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
            +      L    T+     +   M +       +    +    R + LF   + R    D
Sbjct: 1323 ITRIQLKLEGKNTKMQNKESQTQMDQ----YKAEENESQEFEFRHKSLFEYFAARAMKYD 1378

Query: 385  RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
              +       +    + +     R     +  +  +  L +       +++ +   +   
Sbjct: 1379 FDLHKENIFKLDISQLQQFNINKRIIMSSEKNVSEQQILLKLYKLMQSDIQSQFFYQTYS 1438

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE--VKEIFSKSTDLGRRRTTFCEV 502
             +  S+ +  +    K      + K Q +  A  +        FS    +  + +     
Sbjct: 1439 LEDISKTNKYIQYLNKSKISKKTEKSQIDIGASNLLSALFLSKFSYPNLILNKCSFSLAY 1498

Query: 503  SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
             +   A  Q   +    I      +    + K+             +  +      + + 
Sbjct: 1499 IQERLAEFQDCNLSDSLIENANIKKYKSSNTKNAMFGGFQKLMDSDNIYQFNKAILSKNN 1558

Query: 563  ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL-------- 614
            ++ ++  G       G     +   + I      N   +    F      K+        
Sbjct: 1559 LVSITESGFINKFEIGENNFKQLLSKQITNKSLKNIYYESTKRFTLLDQNKIQAESSISL 1618

Query: 615  ----LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
                ++++SK    I+   + +   +     ++    +     +     ++A + E +  
Sbjct: 1619 KLKDIIITSKNKEIIIYNQQNLQIIKN----IQNFPSDLAISSISSDEKYLAAISEEKNC 1674

Query: 671  LIFSID 676
            +IF+++
Sbjct: 1675 IIFNLE 1680


>gi|169787150|gb|ACA80014.1| GyrA [Brenneria nigrifluens]
          Length = 163

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 14/95 (14%)

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-- 636
              +   H  A   + DL   +D+V    +           +G       S+  A  R  
Sbjct: 76  ERRTEITHNTADINIEDLICQEDVVATLSH-----------QGYVKYQPLSDYEAQRRGG 124

Query: 637 KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           +GK+  ++  E+   +L+V  T D +       +L
Sbjct: 125 RGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 159


>gi|321450853|gb|EFX62712.1| hypothetical protein DAPPUDRAFT_336556 [Daphnia pulex]
          Length = 78

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 94  VYDSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYR 130
           +  ++V +AQ FV      L+   G FG     G  AA++R
Sbjct: 33  LMRTIVCMAQDFVGRNNVNLLIRNGQFGTRHQVGKYAASHR 73


>gi|213585067|ref|ZP_03366893.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 125

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       ++  A  R  KGK+  ++  E+   +L+V  T D +       +L
Sbjct: 56  VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 115

Query: 671 LIFSIDQIPE 680
               + Q+PE
Sbjct: 116 YWMKVYQLPE 125


>gi|320157235|ref|YP_004189614.1| hypothetical protein VVM_03971 [Vibrio vulnificus MO6-24/O]
 gi|319932547|gb|ADV87411.1| hypothetical protein VVMO6_02389 [Vibrio vulnificus MO6-24/O]
          Length = 428

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 11/141 (7%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H      L         +   A +  ++    +DG        +  +       +    
Sbjct: 219 RHGDHFHELSTSTDACPALHGSAQSKTQVAFACSDGVI----VVDTPNTTPQFTKLANPA 274

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            L+      T   +D+  KLL ++ +  AF + + E+     K       SS+E+  L  
Sbjct: 275 GLDTGSRFGTVVGFDAADKLLFLTRQAQAFYLAQGELKEVNWK-------SSQEEGALAH 327

Query: 655 KVTGDHVAVVGENRKLLIFSI 675
               D + VV  N  L +F+ 
Sbjct: 328 YAANDALVVVSSNGTLKVFNA 348


>gi|289803041|ref|ZP_06533670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 92

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD----VICFKICE 707
           V     D + ++ +   L+   + +I  + R  +GV L    +         V      E
Sbjct: 1   VQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDE 60

Query: 708 GLTWIDSA 715
            L  ID +
Sbjct: 61  ELDAIDGS 68


>gi|307688009|ref|ZP_07630455.1| DNA topoisomerase IV subunit A [Clostridium cellulovorans 743B]
          Length = 35

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            G  F+   ++++A  R GK  + +     +   V
Sbjct: 1   AGYGFVCTFNDLVARNRAGKALITLPENAHVMPPV 35


>gi|37679012|ref|NP_933621.1| hypothetical protein VV0828 [Vibrio vulnificus YJ016]
 gi|37197754|dbj|BAC93592.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 428

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 11/142 (7%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H      L         +   A +  ++    +DG        +  +       +    
Sbjct: 219 RHGDHFHELSTSTDACPALHGSAQSKTQVAFACSDGVI----VVDTPNATPQFTKLANPA 274

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            L+      T   +D+  KLL ++ +  AF + + E+     K       SS E+  L  
Sbjct: 275 GLDTGSRFGTVVGFDAADKLLFLTRQAQAFYLAQGELKEVNWK-------SSPEEGALAH 327

Query: 655 KVTGDHVAVVGENRKLLIFSID 676
               D + VV  N  L +F+  
Sbjct: 328 YAANDALVVVSSNGTLKVFNAA 349


>gi|47420012|gb|AAT27358.1| DNA gyrase A [Campylobacter jejuni]
          Length = 172

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 11/35 (31%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +    R Y +          KRGG G L    + 
Sbjct: 123 VVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYD 157


>gi|169836657|ref|ZP_02869845.1| hypothetical protein cdivTM_06067 [candidate division TM7
           single-cell isolate TM7a]
          Length = 54

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            ++     L+  SI+ I   SR   GVR+   ++      + 
Sbjct: 1   MLITSEGTLIRTSINDITVQSRSATGVRIMKVRNNEKIASVV 42


>gi|150017763|ref|YP_001310017.1| RND family efflux transporter MFP subunit [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904228|gb|ABR35061.1| efflux transporter, RND family, MFP subunit [Clostridium
           beijerinckii NCIMB 8052]
          Length = 420

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 18/110 (16%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA----FVYDSTCKLLVVSSKGN 622
           ++      +   N       G   ++ +  + N +I+T      V +     + ++  G 
Sbjct: 303 TSRVFNCKVKIDNSDKSLLPGIYGKVTLVSDQNNEIITVPVNALVGNEGEYYVFINDNGT 362

Query: 623 AFIVEES---------EIIANTRKGKTFL-----KVSSEEKMKLVVKVTG 658
           A   + +         E+ +  + G   +      +    ++  VVK   
Sbjct: 363 AKKTKVTIGETNGNNVEMTSGIKDGDQIICSNTSTLQDGSEVDAVVKQDD 412


>gi|123439936|ref|XP_001310734.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121892516|gb|EAX97804.1| hypothetical protein TVAG_157890 [Trichomonas vaginalis G3]
          Length = 334

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 71/254 (27%), Gaps = 2/254 (0%)

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI-KSELDNLLAEKEKIDSLLNSGK 469
           +      +  F ++E+      +  L    +  +    ++  D+L    E  ++     K
Sbjct: 58  NDLTEKQIIEFEMSEHSAVNPSDFELIDENQENDKTTIETRKDHLGTANEIKETAPLQQK 117

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
              + I  +I  +      +       T           T +  M         +  +  
Sbjct: 118 TDPHIIDQDINAISHKEPDNQVALHSSTLIKNEITEYSVTRETKMRINGKSIYFVMKQNN 177

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                +       +     D      H+  TD ++ +      ++L     +        
Sbjct: 178 STVYAAKYKQKFDIIPIFRDLENTHFHSKATDYVINIGKGNHDFSLRTKTRIGRELLSIR 237

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
                D      I+T F   ++    +VS         E      + K   + + +  + 
Sbjct: 238 YFTQYDFLARSSILTFFSISNSDPFKLVSLN-YVKTKFEKNFPTKSVKNAIYCQKNENDP 296

Query: 650 MKLVVKVTGDHVAV 663
           + LV KV  + + +
Sbjct: 297 IILVKKVGKNELII 310


>gi|118344304|ref|NP_001071974.1| zinc finger protein [Ciona intestinalis]
 gi|70571720|dbj|BAE06808.1| zinc finger protein [Ciona intestinalis]
          Length = 300

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/286 (8%), Positives = 65/286 (22%), Gaps = 10/286 (3%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           K  +        L+  +R  + E        +       +L        + +        
Sbjct: 22  KYCDKEFRFPCLLVTHLRTHTGEKPFKCDICEKSFHSRPILKAHKESHKEQKPFKCSICE 81

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVL-FRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
                                 ++ E+     +          +     L    L     
Sbjct: 82  KSFHYIFAVKRHEKIHTGVRPKYKCEICDKYFTQNGNMYRHMLLHNRDKLYECNLCEKGF 141

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           +                F  +E          L+  +   +     +        +    
Sbjct: 142 MQHKELRAHYSEHNKKPFQCSECDKAFFRETTLKRHQLTHKNNKPYQCSICDKYFKSKSH 201

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +       + +   E +   + F++  DL R  T    +         +A +++  +TV 
Sbjct: 202 MKRHMVIHYRKKPYECKLCSKGFTQYKDLKRHYTKHNSMKPYKCDKCDKAYLQEAALTV- 260

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
                     ++H+ D          S     +    ++  L  T+
Sbjct: 261 --------HKRTHTGDKPHKCNICMKSFGYISNMKRHEKTHLTKTN 298


>gi|171319211|ref|ZP_02908329.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding [Burkholderia
           ambifaria MEX-5]
 gi|171095591|gb|EDT40553.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding [Burkholderia
           ambifaria MEX-5]
          Length = 684

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSI 675
            GN F      +  + R G  F+   S + + +  +      G  VA     ++++ F +
Sbjct: 237 SGNRFFNTLGNLQHDPRAGLLFIDFDSGDVLYVAARAEIVWDGPLVASFDGAQRVVRFHV 296

Query: 676 DQIPEMSRGKGV 687
            ++    R +GV
Sbjct: 297 REVR---RTRGV 305


>gi|115360161|ref|YP_777299.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding
           [Burkholderia ambifaria AMMD]
 gi|115285449|gb|ABI90965.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
           [Burkholderia ambifaria AMMD]
          Length = 684

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSI 675
            GN F      +  + R G  F+   S + + +  +      G  VA     ++++ F +
Sbjct: 237 SGNRFFNTLGNLQHDPRAGLLFIDFDSGDVLYVAARAEIVWDGPLVASFDGAQRVVRFHV 296

Query: 676 DQIPEMSRGKGV 687
            ++    R +GV
Sbjct: 297 REVR---RTRGV 305


>gi|324501881|gb|ADY40833.1| Transforming growth factor-beta receptor-associated protein 1
           [Ascaris suum]
          Length = 825

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 48/176 (27%), Gaps = 25/176 (14%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
             +     +   S +  +        L   +T G    L                  + L
Sbjct: 9   KGVKFAAAQCMASNEQVVCVDGCSNFLYFGTTHGNIVRLELQEHGDTEVRDV-----MQL 63

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKG--NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
                I       +   L+VVS+       I     + A T      + +++        
Sbjct: 64  PTKSAITQLLAASAVECLIVVSASKIFYVDINSLQVLSAGTSSNVICIALNTN------- 116

Query: 655 KVTGD----HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC 706
            VT D    H+A+   NR +L+    +     R   VR Q          IC+   
Sbjct: 117 PVTEDPFALHIAIATSNRMILVCEKSE-----RNSFVR-QRITTDDNVIAICYSKN 166


>gi|126797804|gb|ABO27421.1| DNA gyrase subunit A [Mesorhizobium loti]
          Length = 176

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 14/50 (28%)

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
             DGG        I      +  +   Y +     L    +RGG G    
Sbjct: 126 LTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKGRSGM 175


>gi|224052440|ref|XP_002197694.1| PREDICTED: similar to cytochrome P-450 2C45 [Taeniopygia guttata]
          Length = 494

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 41/377 (10%), Positives = 94/377 (24%), Gaps = 5/377 (1%)

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
              + + E+       F  R    + +       I+ +     +Q  R            
Sbjct: 82  YGHDVVKEALVDRADEFAARGHMPIGDRTNKGLGIIFSNNELWLQGRRFSLTTLRNFGMG 141

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           +  + E I++ES   +  +   K    DP  ++            F    +      +  
Sbjct: 142 KRSIEERIQEESDYLLEEINKTKRTPFDPTFMLSCAVSNVICSIVFGKRYDYKDKKFLAL 201

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           +  ++ I +   +   ++    S+           I          + E + + +    P
Sbjct: 202 MNNMNNIFEMMNSRWGQLYQMFSNILDYLPGPHNNIFAEFDALKAFVAEEVKLHQASLDP 261

Query: 414 KPVM----VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                        + E +     +  +++L         +  +           LL    
Sbjct: 262 SSPQDFIDCFLCKMQEEKDRPNSSFYMKNLITSTFDLFLAGTETTSTTLRYGLLLLLKYP 321

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +   +I  EI +V     K     R +  + +    +       +    P TV       
Sbjct: 322 KIQEKIQEEIDQVVGQSRKPCVADRTQMPYTDAVVHEIQRFITLIPLALPHTVTKDTTFR 381

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
              +   +     L     DS +             L+ +G           S       
Sbjct: 382 DYIIPKGTTVFPVLASVLHDSKEFPNPHEFNPEH-FLNKNGSFRKSNFFMPFSAGKRICP 440

Query: 590 IQLLIDLNHNQDIVTAF 606
            + L  +     I T  
Sbjct: 441 GEGLARMEIFLLIATIL 457


>gi|260597675|ref|YP_003210246.1| gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase [Cronobacter
           turicensis z3032]
 gi|260216852|emb|CBA30373.1| Gamma-glutamyl-gamma-aminobutyraldehydedehydrogenase [Cronobacter
           turicensis z3032]
          Length = 499

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 91  DQSVYDS-LVRL---AQPFVQRYPLISGQGNFGNIDGDSAAAY--RYTE 133
           + S+ ++ L RL   AQ F    PL   Q   G +  D  AA   RY E
Sbjct: 311 EASIKEAFLARLKAHAQSFTPGDPL-DPQTTMGTLIDDDHAASVRRYIE 358


>gi|305666862|ref|YP_003863149.1| beta-galactosidase [Maribacter sp. HTCC2170]
 gi|88709086|gb|EAR01320.1| beta-galactosidase [Maribacter sp. HTCC2170]
          Length = 1116

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/301 (6%), Positives = 75/301 (24%), Gaps = 15/301 (4%)

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
            +   +  L+   ++     E           +   +   A ++  +R + + + +    
Sbjct: 432 RRFYELCDLHGMYVVDEANIESHGMYYGKYSLAKKPDWEKAHVDRMVRMVERDKNHPSVI 491

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF----SKSTDLGRRRTTFCEVSRA 505
                      ++        + N I     + +  +        D+            +
Sbjct: 492 IWSMGNEAGNGVNFFKAYDAIKANDITKRPVQYERPYKEHDGNLFDMDSNTDIIVPQYPS 551

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
                +      +   +       + +   +  D   +     +     +       I  
Sbjct: 552 PARFREIGTSMTDRPFIPSEYAHAMGNSTGNFQDYWDIIELYDNLQGGFIWDWVDQSIWK 611

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAI-QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG--- 621
            + +G+ +    G+         +     I           +      + +    KG   
Sbjct: 612 TNENGERFYAYGGDYGENMPTDNSFLNNGIVFPDRSPQPGLYEVKKAHEFINFKEKGINR 671

Query: 622 ----NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
                  I    +     +   T  ++ ++ K    + +  D++A+     +L+   +  
Sbjct: 672 SNELRVLIENLYDFTNLDQFNFTA-QIKADGKALKTIPI--DNIAIETHTGRLIRIPLTD 728

Query: 678 I 678
           I
Sbjct: 729 I 729


>gi|213950526|gb|ACJ54536.1| normocyte binding protein Xb [Plasmodium knowlesi]
          Length = 2845

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 53/472 (11%), Positives = 126/472 (26%), Gaps = 36/472 (7%)

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWC------VEEVGRGSWCIVVT-EIPYQVQK 279
           P+    ++  + I       +    ++ +        +++    S  IV        V  
Sbjct: 135 PSRYSYLDQDKKIYTVNTEDKEKKYIQKKINTPSNTFIQKAKGRSHGIVTQVNNLDYVCV 194

Query: 280 SRLIEKIAELIIAKRIPLLE--DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
               + I  L       +    +++  +  +  +         D    +E I   S  E 
Sbjct: 195 MNNDDNIISLFRPYNPEIYSFREMKHYAERNELLNKKVLTIHNDEIKRIEDILSRSMKEC 254

Query: 338 RFPLN--MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
               +    +++    P+   +            +             +      + +  
Sbjct: 255 SNQTSELSVLINHLENPERYEIPESEYGAKKQNYKD-KLSILHECMKRNYNKHKEE-IKK 312

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           ++  I   I  +           + +++   +   + N  +R +    +   +  +    
Sbjct: 313 SHSRIYGTIDHMDCSWTNYCPTGTYYNMIALRRMDVTNYNIRDITSFLKKIKEIYIFGQD 372

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
             KE    L  S   +  Q    + E+  I +      R+     +       + Q    
Sbjct: 373 IMKEIKGHLHTSLALETAQFI--LEEINYIINDMEIHLRKINKAIKDIYE--LSRQDPWS 428

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                 +  S         +  V +  L+  E  S       H T R      DG   T+
Sbjct: 429 SFHRTVLQNSLFSLALRYSTFKVSVDVLNKLENASNIKIEKLHQTFRKF---KDGLNNTI 485

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC---KLLV-------VSSKGNAFI 625
                 +         L      ++ + +   + S      +L             +   
Sbjct: 486 STHISSTYVISTINYILSSPDEISKSLESLHTFSSEEIKEHILYSNPEIKEAKKNLDEKF 545

Query: 626 VEESEIIANTR------KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
            + +E   NTR       GK  L + + E+++    +         EN K+L
Sbjct: 546 AKLNEYFKNTRELAKRINGKFVLNLKTREQLENKRNIKNKENMTPLENCKML 597


>gi|126797806|gb|ABO27422.1| DNA gyrase subunit A [Mesorhizobium mediterraneum]
          Length = 176

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 14/50 (28%)

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
             +GG        I      +  +   Y +     L    +RGG G    
Sbjct: 126 LSEGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKGRSGM 175


>gi|89515121|gb|ABD75390.1| DNA gyrase subunit A [Sinorhizobium meliloti]
 gi|89515123|gb|ABD75391.1| DNA gyrase subunit A [Sinorhizobium kummerowiae]
 gi|126797756|gb|ABO27397.1| DNA gyrase subunit A [Sinorhizobium meliloti]
 gi|126797758|gb|ABO27398.1| DNA gyrase subunit A [Sinorhizobium kummerowiae]
 gi|126797760|gb|ABO27399.1| DNA gyrase subunit A [Sinorhizobium kummerowiae]
          Length = 176

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I +    +  +   Y +          +RGG G    
Sbjct: 139 IAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|118349215|ref|XP_001033484.1| hypothetical protein TTHERM_00313030 [Tetrahymena thermophila]
 gi|89287833|gb|EAR85821.1| hypothetical protein TTHERM_00313030 [Tetrahymena thermophila
           SB210]
          Length = 1729

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 45/485 (9%), Positives = 129/485 (26%), Gaps = 20/485 (4%)

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
                E + +  +            +I   ++ + +  +             V +     
Sbjct: 272 FTYQFENNHQDNINIYKCATLKDVSLIFWDKQDMFKFQKGFSIS------AFVSDYQTNI 325

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
           W +  T+      K+  I          +  +       S  ++  +   K  ++     
Sbjct: 326 WYLNSTQQWITTDKTNSINIWDLEKEKLKQQIQSKEITGSINEIVEITHIKLVAVSSLDK 385

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
             +++ L      F +++    +  +        ++     +   V      +       
Sbjct: 386 KVTVWDLEKENIIFTIDLGHAGIHHLLYHYQYQCLITSGFENSINVYSVNPQYLDYDSLG 445

Query: 386 RV--EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++         +  ++   ++    +    K   +      +          +  +  + 
Sbjct: 446 KLVGHNSMVTAVQIIDKTPMVVSADDMGNIKIWDIRSLKCLQTINIGF-KTTMTHIVNVP 504

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           +  +   L   +      +S +    +    I  E   +K+  S  T    R     +  
Sbjct: 505 DKNMICLLGTRVNFISFDNSNIQKANEDIYPIKVEFNMMKQEMSICTRKDMRFLRMKDGK 564

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
                T      + E  T    N+     L  H   L+   +  G+ LK  +   +    
Sbjct: 565 ITKIFTGLLQNQDDEIATCSSINQFKNFILGDHRGGLALYSYNNGERLKDLVGHQSEVSQ 624

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEA----IQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           L +    K     + +              I+ +I   H    V          ++V  S
Sbjct: 625 LKIDFPNKLIISSSWDNTVMIQRETPSGAEIKRIIKNAHYNKEVNQMEVSLFHNIIVTGS 684

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL---IFSID 676
            G    + + E +         +++    +      + G  V ++  N  ++    F++ 
Sbjct: 685 SGRKVFIWDYEFVKL----IACIEIDKGTEPTGFFFINGYRVLIITTNSGMIYILKFNVK 740

Query: 677 QIPEM 681
           ++   
Sbjct: 741 ELKAQ 745


>gi|89515129|gb|ABD75394.1| DNA gyrase subunit A [Sinorhizobium terangae]
 gi|89515131|gb|ABD75395.1| DNA gyrase subunit A [Sinorhizobium terangae]
 gi|89515133|gb|ABD75396.1| DNA gyrase subunit A [Sinorhizobium terangae]
          Length = 176

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I +    +  +   Y +          +RGG G    
Sbjct: 139 IAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|149393056|gb|ABR26590.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
 gi|149393058|gb|ABR26591.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
 gi|149393060|gb|ABR26592.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
 gi|149393062|gb|ABR26593.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
          Length = 176

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I +    +  +   Y +          +RGG G    
Sbjct: 139 IAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|89515113|gb|ABD75386.1| DNA gyrase subunit A [Sinorhizobium fredii]
 gi|126797738|gb|ABO27388.1| DNA gyrase subunit A [Sinorhizobium xinjiangense]
          Length = 176

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I +    +  +   Y +          +RGG G    
Sbjct: 139 IAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|89515127|gb|ABD75393.1| DNA gyrase subunit A [Sinorhizobium saheli]
 gi|126797766|gb|ABO27402.1| DNA gyrase subunit A [Sinorhizobium saheli]
 gi|126797768|gb|ABO27403.1| DNA gyrase subunit A [Sinorhizobium saheli]
          Length = 176

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I +    +  +   Y +          +RGG G    
Sbjct: 139 IAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|89515125|gb|ABD75392.1| DNA gyrase subunit A [Sinorhizobium medicae]
 gi|126797762|gb|ABO27400.1| DNA gyrase subunit A [Sinorhizobium medicae]
          Length = 176

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I +    +  +   Y +          +RGG G    
Sbjct: 139 IAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|126797808|gb|ABO27423.1| DNA gyrase subunit A [Mesorhizobium plurifarium]
          Length = 176

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 14/50 (28%)

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
             +GG        I      +  +   Y +     L    +RGG G    
Sbjct: 126 LSEGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKGRSGM 175


>gi|126797770|gb|ABO27404.1| DNA gyrase subunit A [Sinorhizobium saheli]
          Length = 176

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I +    +  +   Y +          +RGG G    
Sbjct: 139 IAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|126797786|gb|ABO27412.1| DNA gyrase subunit A [Sinorhizobium sp. Le39]
 gi|126797788|gb|ABO27413.1| DNA gyrase subunit A [Sinorhizobium sp. Lc56]
          Length = 176

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I +    +  +   Y +          +RGG G    
Sbjct: 139 IAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|89515135|gb|ABD75397.1| DNA gyrase subunit A [Sinorhizobium terangae]
          Length = 176

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I +    +  +   Y +          +RGG G    
Sbjct: 139 IAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|126797782|gb|ABO27410.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
          Length = 176

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I +    +  +   Y +          +RGG G    
Sbjct: 139 IAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|328870151|gb|EGG18526.1| hypothetical protein DFA_04020 [Dictyostelium fasciculatum]
          Length = 596

 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 54/595 (9%), Positives = 143/595 (24%), Gaps = 84/595 (14%)

Query: 130 RYTEARM---TQVAELIL-----------QGVDED----------AVDFRDTYN---EED 162
           RYT  +M   ++++  IL             +D+D           VD  +  +    + 
Sbjct: 12  RYTFTKMFFTSKLSISILLITLIFISISNAWLDDDEVRKYLYPYITVDTLENQDLKHGQY 71

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
              +  P+ +         G+  GM+T      +    +A L+       S  +  +   
Sbjct: 72  GFVIYGPTSYS-CEVKVADGMG-GMSTIT---KMLPTSDAKLSARFPITSSAPESYKTF- 125

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW---CIVVTEIPYQVQK 279
             D    G      +   ++  +     +  A+  + +V   +W     +  E       
Sbjct: 126 --DVGLHGYYTIDYDQSEKTNNVFLSYAKNYAKTDLYKVPLYAWYAKQAIWKEYDTPFHS 183

Query: 280 SRLI-EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
             +I +++   I    IP +    +                L     + +       +  
Sbjct: 184 ESMILKQLDLAINDADIPDMSVQDNIYMYTQNFPCSICTSKLVTKEFVNNR----KADYE 239

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
               +N +   ++ Q +  +      +     +  R      +     +   +     Y 
Sbjct: 240 LSKQLNGIGDFKIVQPINFNEQF-LSVDAAYGIKNRLLPQDTEKQRTYLSFSRQWDNDYC 298

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR--------------SLRKLEE 444
           +   ++++ +        +     +     D +L   L                 R    
Sbjct: 299 HYGNVLSLYQTYQVVAAPINRHSFVIGTAQDVLLEFVLGSTKLFNLPQKDKDPYFRFNLR 358

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI-REVKEIFSKSTDLGRRRTTFCEVS 503
            Q +           +         +  N  +    +E    F     +        +  
Sbjct: 359 AQSQDAQTAAFKYMIQDAFRYFYEAKIENFRSYTSWQEYLGEFGYPEAMKEVMKNALDKF 418

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           +       Q++     + V  +  G         +           +          +++
Sbjct: 419 KQKDCKWSQSIYRL--MGVKGNKNGMPIKRTVMPIAPPQGLKPPACANMERFPCKPIEKL 476

Query: 564 LL------LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                                        GE +     +++ +   T        K+   
Sbjct: 477 TYYKVSQLFLNYKYPVCEIYKKQGYEDQFGEVLVSSSGMSNQELQTTDLTKFKDSKI--- 533

Query: 618 SSKGNAFIVEESEIIANTRKGKTFL----------KVSSEEKMKLVVKVTGDHVA 662
               + FI          R+G                  ++++        D +A
Sbjct: 534 ----SEFITNFERFYYVKRRGDQLRPCAQAAYVPDNKDEDDEISPESDTDADDIA 584


>gi|89515141|gb|ABD75400.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515143|gb|ABD75401.1| DNA gyrase subunit A [Ensifer mexicanus]
          Length = 176

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I +    +  +   Y +          +RGG G    
Sbjct: 139 IAQEDMVVTVSHLGYIKRVPLATYRAQRRGGKGRSGM 175


>gi|89515137|gb|ABD75398.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515139|gb|ABD75399.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515145|gb|ABD75402.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515147|gb|ABD75403.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515149|gb|ABD75404.1| DNA gyrase subunit A [Ensifer mexicanus]
          Length = 176

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           I +    +  +   Y +          +RGG G    
Sbjct: 139 IAQEDMVVTVSHLGYIKRVPLATYRAQRRGGKGRSGM 175


>gi|91786551|ref|YP_547503.1| pyridoxamine 5'-phosphate oxidase-like protein [Polaromonas sp.
           JS666]
 gi|91695776|gb|ABE42605.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
           [Polaromonas sp. JS666]
          Length = 316

 Score = 37.8 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSID 676
           GN F      I  N R G  F+   + + + L V       G  V    E ++LL F + 
Sbjct: 228 GNFFFNTLGNIAVNPRAGLLFIDFDNGDLLYLAVTADIIWDGPEVQAFAEAQRLLRFKVG 287

Query: 677 QIP 679
            + 
Sbjct: 288 SMR 290


>gi|297809489|ref|XP_002872628.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297318465|gb|EFH48887.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 117

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 87  HPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG 119
           H H +Q +  +++R+AQ F       ++   G FG
Sbjct: 29  HHHCEQILSRTIIRMAQNFVGNNNVNMLRPIGVFG 63


>gi|126797802|gb|ABO27420.1| DNA gyrase subunit A [Agrobacterium rhizogenes]
          Length = 176

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 14/48 (29%)

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           DGG+       I      +  +   Y +          +RGG G    
Sbjct: 128 DGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|126797800|gb|ABO27419.1| DNA gyrase subunit A [Agrobacterium rhizogenes]
          Length = 176

 Score = 37.4 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 14/48 (29%)

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           DGG+       I      +  +   Y +          +RGG G    
Sbjct: 128 DGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|122939091|gb|ABM69127.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae USDA 2370]
 gi|126797790|gb|ABO27414.1| DNA gyrase subunit A [Rhizobium indigoferae]
          Length = 176

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 14/48 (29%)

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           DGG+       I      +  +   Y +          +RGG G    
Sbjct: 128 DGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|167949301|ref|ZP_02536375.1| hypothetical protein Epers_23506 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 53

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 15/38 (39%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
               D+    L+ S  G  F V+   + +  + G+  +
Sbjct: 1   MLGGDAKQWYLLASDAGYGFRVQLEVMQSKNKAGQGAV 38


>gi|237756970|ref|ZP_04585432.1| putative pega domain protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237690869|gb|EEP60015.1| putative pega domain protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 533

 Score = 37.4 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 62/199 (31%), Gaps = 9/199 (4%)

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +  +  +  ++     V+   +      +    P+ +    + ++ S K+          
Sbjct: 202 YKDTFTIKVKKGDEFYVNYTLEDVQLPPVQAYGPLYMTKDYKYFVSSGKAGIYFWDITDL 261

Query: 546 KEGDSLKIALHAHTTDRILLL---STDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
           K   SL         D+               +          +     +++L+  N   
Sbjct: 262 KPHISLWDPEDIRNFDKFSTFAISDDGKFTTAIKPIKALAYKYKDMKNPVKILVWDNSTA 321

Query: 601 DIVTAFVYDSTCKLLVVSSKG---NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            ++   V+D    L+     G     F  +    + + + G     +S  E +  VVK  
Sbjct: 322 SVIVNKVFDVNAFLISFGKDGNNVYVFSKDGKGFVLDAKSGNKIKDISLNESL-SVVKGY 380

Query: 658 GDHVAVVGENRKLLIFSID 676
            + +    E+ KL++F  +
Sbjct: 381 NNKIYAGTESGKLIVFDTN 399


>gi|291236793|ref|XP_002738323.1| PREDICTED: zonadhesin-like [Saccoglossus kowalevskii]
          Length = 3191

 Score = 37.4 bits (85), Expect = 9.5,   Method: Composition-based stats.
 Identities = 34/342 (9%), Positives = 87/342 (25%), Gaps = 29/342 (8%)

Query: 280  SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
               IE++  L       L E    E  +      F K +    D   + ++ +      F
Sbjct: 2191 QDNIEEVKRLYSEINRKLKELY--EENKPEYREEFEKMQKTVKDKYNDILYKMEQKYEDF 2248

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
                       + +         E   +  E+       +    D      K L      
Sbjct: 2249 RREYAEELKETLKKTWSDIKDNSEEY-YYDEIRPVVGEVKEAWEDVSYLAKKDLEDIREY 2307

Query: 400  IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
              E +  ++         +     ++ +       R     K++      E        +
Sbjct: 2308 WQEQLDELKEYLDDVKRDLMERYYSDVKPMVEKMRRQYEETKMDMKIRYIEYKQ--KLGD 2365

Query: 460  KIDSLLNSGKQQWNQIACEIRE-----VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
            K D L    +++W  +   ++E      +  F +  D   R T   E  + +   + +  
Sbjct: 2366 KWDELREKIERKWEDVRRTLKEKYEGLDRTKFYQIKDKYNRMTIRIEELKQEAREIFEEY 2425

Query: 515  IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
                     ++ + + +    +  D      +  +   I      +              
Sbjct: 2426 KRSAK----VTYQLYKQKWNYYIEDARNSIERRWEESTIKSWVDES-------------- 2467

Query: 575  LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                           I+ +  +   ++IV+         +++
Sbjct: 2468 -KEKYDEIYYSALRKIEEIKRMPEYEEIVSLLELKEVPYIVL 2508


>gi|242095806|ref|XP_002438393.1| hypothetical protein SORBIDRAFT_10g016310 [Sorghum bicolor]
 gi|241916616|gb|EER89760.1| hypothetical protein SORBIDRAFT_10g016310 [Sorghum bicolor]
          Length = 94

 Score = 37.4 bits (85), Expect = 9.5,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
            G  A + RY    ++ +   I    D+  +D+    + +  EP  
Sbjct: 50  GGKDANSARYIFTELSSITCRIFNENDDILLDY-LREDGQSIEPSW 94


>gi|126797798|gb|ABO27418.1| DNA gyrase subunit A [Rhizobium tropici]
          Length = 176

 Score = 37.4 bits (85), Expect = 9.5,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 14/48 (29%)

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           DGG+       I      +  +   Y +          +RGG G    
Sbjct: 128 DGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.126    0.368 

Lambda     K      H
   0.267   0.0384    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,632,869,127
Number of Sequences: 14124377
Number of extensions: 365377609
Number of successful extensions: 675676
Number of sequences better than 10.0: 7003
Number of HSP's better than 10.0 without gapping: 6824
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 610632
Number of HSP's gapped (non-prelim): 14060
length of query: 753
length of database: 4,842,793,630
effective HSP length: 147
effective length of query: 606
effective length of database: 2,766,510,211
effective search space: 1676505187866
effective search space used: 1676505187866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 85 (37.4 bits)